BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 537021.9.peg.753_1
         (1033 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done



>gi|188585188|ref|YP_001916733.1| DNA polymerase III catalytic subunit, DnaE type [Natranaerobius
            thermophilus JW/NM-WN-LF]
 gi|179349875|gb|ACB84145.1| DNA polymerase III catalytic subunit, DnaE type [Natranaerobius
            thermophilus JW/NM-WN-LF]
          Length = 1134

 Score =  865 bits (2234), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1036 (39%), Positives = 614/1036 (59%), Gaps = 28/1036 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K   FVHL  HS YSLL+G   +N ++ K    Q PA+A+TD   ++ A+EF ++A  
Sbjct: 1    MPKP--FVHLHTHSQYSLLDGKCRINELVQKAKEYQMPALALTDHGVMYGAVEFYKQAKE 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+GC++ +  +                  +VLL     GY+ L++LVS  +  + 
Sbjct: 59   AGIKPILGCEVYVAPRGRTVKDPVKDKHQ---YHLVLLAENQTGYKNLMKLVSLAF-KEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 R+    L+    +G+I L+   +G I         +VA+ R    K +FG +  Y
Sbjct: 115  FYYKPRVDYELLERYH-DGIIALSACLAGEIPTLILQGQYEVAKNRADRLKSIFGQNNFY 173

Query: 184  VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ H    ++   + ++Q++   ++ LVATN+  +L+ ++   HDVL+ +     +  
Sbjct: 174  LELQDHGLTEEQQVNTHLLQISRELDIGLVATNDIHYLTNQESSIHDVLLCIQTGKHLDD 233

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            +DR +  + + Y K+  EM +IF D P A+ENT+ IA RC   L      LP F   E  
Sbjct: 234  QDRMKFPSNEFYFKDGDEMSNIFKDFPGAIENTLAIADRCQVELDFDTLHLPEFRVPEGY 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D    E + LR     GL  R  Q            ++RL++EL+VI++M ++ YFLIV 
Sbjct: 294  D----ENSYLRKLCQKGLLERYEQ-------VTTKIQERLEYELDVISKMGYASYFLIVW 342

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DF+++A +NNI VGPGRGS AGS+ AY+L IT++DP+R+ LLFERFLNP+R++MPD DID
Sbjct: 343  DFVRFAHENNILVGPGRGSAAGSLVAYSLRITNVDPIRYGLLFERFLNPERVNMPDIDID 402

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC + R+ VI+YV  KYG++ VA IITFG++QA+AA+RDVGR + M Y  VDR+ K+IP+
Sbjct: 403  FCYENRERVIQYVVEKYGNDNVAHIITFGTMQARAAVRDVGRVMGMNYGDVDRVAKMIPH 462

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A+  +  F++    DP V  L+ IS+ +EGL RHAS HAAGIVI   PL++
Sbjct: 463  DPGMTID-KALELNKDFKKLYDEDPQVRELINISKSIEGLPRHASIHAAGIVISKAPLTE 521

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
             VP+  +   D  VTQF M  +E+ GL+K DFLGLKTLT++ ++++ + Q     VDL+ 
Sbjct: 522  YVPLQCN--DDQVVTQFPMGTLEELGLLKMDFLGLKTLTMMNRAVEIVNQTQAETVDLNK 579

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD +T+ L+    TLG+FQLESSGMR  L  ++P   EDIIA  +LYRPGP++ I  
Sbjct: 580  IPLDDEQTFRLIREGNTLGVFQLESSGMRGVLRDLKPTSFEDIIATSALYRPGPMEQIPT 639

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K+G+ +I   H  + P+L+ET G+I+YQEQ+MQ+A  ++G+SL EAD+LRRA+GKK
Sbjct: 640  FIESKHGQREISYPHEDLKPILEETYGIIVYQEQIMQVASTMAGFSLGEADLLRRAIGKK 699

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             K  + +QKE+F+ G    G  K    ++++L+ KFADYGFNKSH+AAYA I+YQ+A++K
Sbjct: 700  KKNILAEQKEKFVQGCINRGYGKETGEHVYDLIVKFADYGFNKSHSAAYAYIAYQSAYLK 759

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSL 839
             +YP +F+AA +T  M++ +K+  +  +AR+  I+I+PP VN   VDF  V D RI + L
Sbjct: 760  ANYPTQFMAALLTNSMNDTDKLALYIDNAREMGIEILPPDVNESLVDFTAVSDFRIRFGL 819

Query: 840  AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            AA+K VG      I+     +  F SL+DFCSR D +  N++ +ESL+  GA D F ++R
Sbjct: 820  AAVKNVGRGAVEEIITRRRKEGGFTSLDDFCSRTDLRACNKKAIESLIKVGAFDAFEHNR 879

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFENEQR 957
             Q+LQ LD   K AQ            +F     GT    +          +   + E+ 
Sbjct: 880  KQMLQVLDEAVKKAQAFTSGSVKGQVTMFEIVSDGTNKIDLDYPDVEEFTLNELLQMEKE 939

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            +LGF+ SGHPLD YK  L  +      E      G  I++A +    ++  T+KG ++ +
Sbjct: 940  LLGFFVSGHPLDNYKEKLANIDTSSLAELNQIKEGFRIKVAGICQDVKEIITKKGEQMAF 999

Query: 1018 VTFSEPAKEYEANFFP 1033
             T  + +   E   FP
Sbjct: 1000 CTLEDQSGTVELVIFP 1015


>gi|118580484|ref|YP_901734.1| DNA polymerase III, alpha subunit [Pelobacter propionicus DSM 2379]
 gi|118503194|gb|ABK99676.1| DNA polymerase III, alpha subunit [Pelobacter propionicus DSM 2379]
          Length = 1184

 Score =  865 bits (2234), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/1042 (41%), Positives = 630/1042 (60%), Gaps = 18/1042 (1%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            +Q+  ++P FVHL VH+ YSLL+GA+ L +++ K  A   PA+AITD  N+F A+EF  K
Sbjct: 7    SQHPPQAP-FVHLHVHTQYSLLDGAIRLEDLIAKAKAHNMPALAITDHGNMFGAVEFYLK 65

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
               AGI+P+IGC++ I            +        ++LL    +GY+ L  L S  Y 
Sbjct: 66   CKKAGIKPLIGCEVYIAPDSRFSR-ESTRGISEAAYHLILLCENMQGYRNLSYLTSAGY- 123

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             +      RI    LQE  +EGLI L+    G +    F +    A +    + +LF DR
Sbjct: 124  KEGFYYRPRIDRELLQE-HSEGLIALSACLKGEVAMQCFRDRMDDALETARWYSQLFPDR 182

Query: 182  LYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ LQ +   ++     +++++A T +LPLVATN+  +L+ ED  AH+VL+ +     +
Sbjct: 183  YYIELQENTLPEQDVVNKRLMEVAATLQLPLVATNDCHYLNREDARAHEVLLCIQTGKTM 242

Query: 241  SQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            S     + +  + Y+K+  EMV+ F   PEA+ NT++IA RC   L +            
Sbjct: 243  SDPSHMKFSAEEFYVKSPEEMVAAFGYAPEAVSNTLKIADRCDLKLPLDTGEY--HFPHF 300

Query: 300  CDDIQKEEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                 K  ++ L   AV GL+ R+    A+         Q Y +RL  EL  I  M+F  
Sbjct: 301  DPPAGKNHDDMLEELAVQGLKERMVTILAKYPDMSLERRQAYFERLQIELKCIREMQFPA 360

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV+DFI WAK   IPVGPGRGS AGS+ AYA+ ITD+DPL ++LLFERFLNP+R++M
Sbjct: 361  YFLIVSDFITWAKNKGIPVGPGRGSAAGSLVAYAIRITDLDPLPYNLLFERFLNPERITM 420

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DFCQDRR+EVI+YV  KYG ERV QIITFG+++AKA +RDVGRAL M Y  VDR+
Sbjct: 421  PDIDVDFCQDRREEVIQYVIEKYGRERVCQIITFGTMKAKAVVRDVGRALNMTYGDVDRI 480

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             KLIP+D    +  +A+  + +  E    DP V  LL+ +  LEGL RHASTHAAG+V+ 
Sbjct: 481  AKLIPDDLKMTL-AKALKQEPQLNEMAERDPQVRDLLDTALCLEGLTRHASTHAAGVVVA 539

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
             R L + +P+Y+D ++    TQ++MK++E  GL+KFDFLGLK LT+++ ++  +   +  
Sbjct: 540  PRQLEEFLPVYKDQKTGSINTQYSMKYVEMVGLVKFDFLGLKNLTVIENAVHLVRAGKDP 599

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ +  DD E+Y L+++  T GIFQLESSGM++ L  ++P C ED+IA  +LYRPGP
Sbjct: 600  DFDITRLRDDDSESYDLISSGNTTGIFQLESSGMKEMLVKLKPSCFEDVIAACALYRPGP 659

Query: 655  IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +   +V  +  RK+G++K+V   P ++P+LK+T GVI+YQEQVMQI++ L+GYSL  AD+
Sbjct: 660  LGCGMVDEFIERKHGRQKVVYDLPQLEPILKDTYGVIVYQEQVMQISRTLAGYSLGRADL 719

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK    M K+KE F+ GA   GI    A  IF+ +AKFA+YGFNKSH+AAYA+I
Sbjct: 720  LRRAMGKKDPAVMAKEKEPFLEGAKAQGIDPKKAEAIFDQMAKFAEYGFNKSHSAAYALI 779

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +YQTAW+K+HYPVEFLAA +T +MD+ +K+ K   D R+  I+++PP VN   + F V  
Sbjct: 780  AYQTAWLKSHYPVEFLAALLTCDMDSTDKVIKNINDCREQGIEVLPPDVNKSGLTFTVVG 839

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            N + + L A+KGVGT     I+EA  D PF  + DFC RVD ++ N++VLE+L+  GA D
Sbjct: 840  NSMRFGLGAVKGVGTGAVEAILEARQDGPFKDVYDFCERVDMRRSNKKVLEALIKCGAFD 899

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSV 950
                 R  +++ L+    + Q +++ R +   ++F  ++   +  +   L      +   
Sbjct: 900  STNAPRAAMMEGLETAMNFGQRIQQERASAQVSLFGDDEVARSGGNGHRLPDVPEWHDKE 959

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            +   E+  LGF  +GHPLD Y   ++++             G  IR+  +V S ++  T+
Sbjct: 960  KLALEKEALGFLITGHPLDRYVDDIKRLNCVEISRLTEQADGGEIRVCGIVSSLKEITTK 1019

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            KG R+G+VT  +     E   F
Sbjct: 1020 KGDRMGFVTIEDLTGSVEVTVF 1041


>gi|78222430|ref|YP_384177.1| DNA polymerase III subunit alpha [Geobacter metallireducens GS-15]
 gi|78193685|gb|ABB31452.1| DNA polymerase III, alpha subunit [Geobacter metallireducens GS-15]
          Length = 1155

 Score =  862 bits (2227), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1034 (40%), Positives = 613/1034 (59%), Gaps = 14/1034 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA+ L +++ K      PA+AITD   +F A+EF  K    G++P
Sbjct: 2    SFVHLHLHTQYSLLDGAIRLGDLIKKAKDTDMPAVAITDHGVMFGAMEFYLKCKDKGVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ I          +G         ++LL     GY+ L +LVS  +  +      
Sbjct: 62   IIGSEVYIAPGSRFVKEVKGGEA-GAGYHLLLLCENMTGYRNLSKLVSVGF-KEGFYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +  +EGLI L+    G +      +  + A      +  LF DR Y+ LQ +
Sbjct: 120  RIDKEVLAQY-SEGLICLSACLKGEVAYLCERDRMEEAIGVARWYADLFPDRYYIELQEN 178

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +    ++++A    LPLVATN+  +L+ ED  AH+VL+ +     ++   R R 
Sbjct: 179  GLAEQDKANKGLLEVAREVGLPLVATNDCHYLNREDARAHEVLLCIQTGKTMNDSARMRF 238

Query: 249  T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +  + Y+K   EM + F   PEA+ NTV+IA RC+          P+F       + +  
Sbjct: 239  STDEFYVKTPEEMAAAFHYAPEAVSNTVKIAERCNLDFDFKTYYFPQFDPPVGQTLDQML 298

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+  R      L+    +         Q Y +RL  EL+ I +M F GYFLIVADFI WA
Sbjct: 299  EDAARKGLEFRLKEIRLKNPDMSPEQEQKYWERLRIELDCITQMGFPGYFLIVADFINWA 358

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K + IPVGPGRGS AGS+ AY++ ITD+DPL ++LLFERFLNP+R+SMPD D+DFCQDRR
Sbjct: 359  KDHGIPVGPGRGSAAGSLVAYSIRITDLDPLPYNLLFERFLNPERISMPDIDVDFCQDRR 418

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI YV  KYG ++V QIITFG++ A+A +RDVGRAL M Y  VD++ KL+P      +
Sbjct: 419  EEVIHYVTGKYGRDQVCQIITFGTMSARAVIRDVGRALDMTYGDVDKIAKLVPEVLGIKL 478

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                IA + R +EA  AD  V  LLEI  +LEGL RHASTHAAG+V+  + L +  P+Y+
Sbjct: 479  KDA-IAQEPRLKEASEADSRVKELLEIGLRLEGLARHASTHAAGVVVAPKVLEEFCPVYK 537

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
            D ++    TQ++MK++EK GL+KFDFLGLK LT++  ++  +   +    D++ +  DD 
Sbjct: 538  DQKTGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIHNAVKIIRAGKDPNFDIAALRDDDR 597

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664
             +Y L++   T G+FQLESSGM+  L  ++P C ED+IA  +LYRPGP+ + +   + +R
Sbjct: 598  ASYDLISAGNTTGVFQLESSGMKDMLVKLKPSCFEDVIAACALYRPGPLGSGMVDDFIDR 657

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G++K+V   P ++P+LK+T GVI+YQEQVMQIA+ L+GYSL  AD+LRRAMGKK   E
Sbjct: 658  KHGRKKVVYDLPQLEPILKDTYGVIVYQEQVMQIARTLAGYSLGGADLLRRAMGKKDPAE 717

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ++ F+ GA   G+    A  IF+L+AKFA+YGFNKSH+AAYA+++YQTA++K HYP
Sbjct: 718  MAKQRDIFLEGAKNGGVDLQKAGAIFDLMAKFAEYGFNKSHSAAYALVAYQTAYLKAHYP 777

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAA +T +M N +K+ K   D R+  I+I+PP +N   + F+V  N I + L A+K 
Sbjct: 778  VEFLAALLTEDMGNTDKVVKTISDCREMGIEILPPDINDSHLSFRVLGNSIRFGLGAVKN 837

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG      I+EA  +  F  L DFC RVD  K+N+RV+ESLV  GA D  G  R QL+ +
Sbjct: 838  VGEGAIEAIIEARQEGDFKDLFDFCERVDLHKVNKRVVESLVKCGAFDSTGGRRSQLMSA 897

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEK-----GTFSDKITLEKFSVENSSVRFENEQRVL 959
            L++     Q +++ R +   ++F  E+     G    K+ L      +  ++   E+  L
Sbjct: 898  LEDAMAIGQKIQQERESAQVSLFGVEEIVRTNGNGKGKVQLPDIPEWDDKLKLGLEKEAL 957

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            GF+ +GHPL  Y+  +++               + ++L  +V S ++  T+KG R+ + T
Sbjct: 958  GFFITGHPLGRYEKEIKRFANVDTATLDERADKSEVKLCGIVTSLKELITKKGDRMAFAT 1017

Query: 1020 FSEPAKEYEANFFP 1033
              +     E   FP
Sbjct: 1018 LEDLLGSVEVVVFP 1031


>gi|169831212|ref|YP_001717194.1| DNA polymerase III, alpha subunit [Candidatus Desulforudis
            audaxviator MP104C]
 gi|169638056|gb|ACA59562.1| DNA polymerase III, alpha subunit [Candidatus Desulforudis
            audaxviator MP104C]
          Length = 1075

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/1037 (38%), Positives = 595/1037 (57%), Gaps = 31/1037 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ YSLL+GA  + +++ + A    PA+AITD   +F  +EF +    AG++P
Sbjct: 3    DFVHLHTHTEYSLLDGAARIKDLVRRAAEFGMPALAITDHGTMFGVVEFYKACRNAGVKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC++ +  +      +        +  +VLL     GY+ L+ LVS  +  +      
Sbjct: 63   VIGCEVYVAPRTRHDRQSG---IDDKLAHLVLLAENERGYRNLLRLVSLSFT-EGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L     EGLI L+   +G I           A +    ++ LFG   Y+ LQ H
Sbjct: 119  RIDREILA-THREGLIALSACLAGEIPELILAGKPDRALETAAEYRDLFGKNFYLELQDH 177

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +      +V +     + LVATN+  ++  E  E  D+L+ +     V    R R 
Sbjct: 178  GLPGQSVVNRGLVDIGKRLGIELVATNDVHYVEREQAENQDILLCIQTGKTVHDAGRLRF 237

Query: 249  TPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D +      EM  +F++LP AL NT  IA RC+  L      LP +          + 
Sbjct: 238  EGDQFYFKSGGEMARLFAELPAALANTRLIAERCNLTLDFETLHLPEYRVP----PNYDA 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L      GL              + D R+RLD+EL VIA MK+S YFLIV DFI++A
Sbjct: 294  DTYLAELCHQGLAR-------RYSPVSDDIRRRLDYELRVIAEMKYSSYFLIVWDFIRFA 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  I VGPGRGS AGS+ AY+L IT+IDPL + LLFERFLNP+R+S+PD D DFC +RR
Sbjct: 347  REKGILVGPGRGSAAGSLVAYSLGITNIDPLAYGLLFERFLNPERISLPDIDSDFCFERR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG + VAQIITFG++ A+AA+RDVGRAL +PY++VDR+ KLIP +P   +
Sbjct: 407  GEVIDYVFEKYGRDCVAQIITFGTMAARAAVRDVGRALGLPYAEVDRIAKLIPGEPGMSI 466

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+       E    D +V ++LE ++ LEG+ RHAS HAAG+VI    L+  VP+YR
Sbjct: 467  E-KALERSPELAELYERDENVRKVLEAARALEGMPRHASIHAAGVVIAKEKLTNYVPLYR 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDH 606
                 +  TQF+M+ IE+ GL+K D LGL+TLT++  +++     RG K+++  IP DD 
Sbjct: 526  TS-DGVVATQFSMEAIEELGLLKMDLLGLRTLTVIGDTVELIRRHRGQKLEMETIPLDDP 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664
             TY LL    T G+FQLESSGMR  L  ++P+  ED+IALV+LYRPGP+ + +   +  R
Sbjct: 585  ATYDLLGRGDTAGVFQLESSGMRSILRELRPEVFEDVIALVALYRPGPLGSRMVEDFIKR 644

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK ++  +HP + P+LK+T GVI+YQEQVM+IA  L+G+SL EAD+LRRAMGKK  E 
Sbjct: 645  KHGKTEVQYLHPKLRPILKDTYGVILYQEQVMRIASDLAGFSLGEADLLRRAMGKKKPEI 704

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +   +++F+ GA+ +G+   +A  IF+L+A FA YGFNKSH+AAYA+I+YQTA++K +YP
Sbjct: 705  IAGLRDQFLEGATAHGVDPAVAGQIFDLMAYFAGYGFNKSHSAAYALIAYQTAYLKANYP 764

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +E++AA +T   D+ EK+  + ++ R+  I+++PP VN    DF V  ++I + LA ++ 
Sbjct: 765  IEYMAALLTSVRDSPEKVSSYVEECRRLGIEVLPPDVNESRKDFTVVGDKIRFGLAGVRN 824

Query: 845  VGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG      ++E    + PF SL DFCSR+D K +N+R++ESL+ AGA    G+ R QLL 
Sbjct: 825  VGEAAVNAVIETRERNGPFRSLPDFCSRLDGKVVNKRMVESLIRAGAFSSLGFRRTQLLA 884

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAH-------EKGTFSDKITLEKFSVENSSVRFENEQ 956
             +D    ++Q ++K + +   ++F              + +I +   +          E+
Sbjct: 885  VMDEALSFSQRLQKEKESGQLSLFGDWGDFGGEGTAAAAPEIVVPHLAEFERHEILAMEK 944

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             +LG Y SGHPL  +K  LR++      E      G  + L  +VV  +   TRKG  + 
Sbjct: 945  EMLGLYLSGHPLQEFKDTLRRLTTVNAVEIPELNPGQQVILGGLVVGLKTITTRKGEPMC 1004

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++   +     E   FP
Sbjct: 1005 FLNLEDLTSRAEIVIFP 1021


>gi|147678555|ref|YP_001212770.1| DNA polymerase III DnaE [Pelotomaculum thermopropionicum SI]
 gi|146274652|dbj|BAF60401.1| DNA polymerase III, alpha subunit [Pelotomaculum thermopropionicum
            SI]
          Length = 1196

 Score =  859 bits (2220), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/1031 (38%), Positives = 604/1031 (58%), Gaps = 26/1031 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +HS YSLL+GA  +N+ + + +  Q PA+AITD   +F  ++F +    AGI+P+
Sbjct: 15   FVHLHLHSEYSLLDGAARINDAVKRASEMQMPALAITDHGVMFGTVDFYKACKKAGIKPV 74

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +  +     T +       +  +VLL    EGY+ L+ LVS  ++        R
Sbjct: 75   LGCEVYVAPRSMDDRTPK---IDDNLSHLVLLAENEEGYRNLLNLVSMAFIR-GFYYKPR 130

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +    L E  + GLI L+G  +G +        ++ A +    ++ +FG +  ++ LQ H
Sbjct: 131  VDKELLSE-HSRGLIALSGCIAGEVSARILAGENEKARQAAGDYRDIFGPENFFLELQDH 189

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     +++++     +PLV TN+  ++   D E  DVL+A+     V    R + 
Sbjct: 190  GFAEQRKVNREMLKIHKEMNIPLVVTNDVHYVRRGDAETQDVLLAIQTGKSVDDPGRMKF 249

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + + YLK+  EM  +F +L  AL NTVEIA RC+  ++     LP +   E  D     
Sbjct: 250  QSEELYLKSPEEMNLLFGELSGALRNTVEIAGRCNVEIEFGKYYLPHYPVPEGYD----A 305

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L      G            G  +   ++RL++EL VI +M +S YFLIV DFI +A
Sbjct: 306  DTYLAELCYQGARRI-------YGELSDGVKKRLEYELGVIKQMGYSAYFLIVWDFIHYA 358

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++N IPVGPGRGS AGS+ AY+L IT IDPL++ LLFERFLNP+R+SMPD D+DFC +RR
Sbjct: 359  RQNGIPVGPGRGSAAGSLVAYSLGITSIDPLKYGLLFERFLNPERVSMPDIDVDFCFERR 418

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             E+I YV  +YG +RVAQIITFG++ A+AA+RDVGRAL MPY +VDR+ KL+P +    +
Sbjct: 419  GEIIDYVVRRYGADRVAQIITFGTMAARAAIRDVGRALNMPYGEVDRVAKLVPMELHMTI 478

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+ +    RE     P V +L++ +  LEG+ RHASTHAAG+VI   PL+  +P+Y+
Sbjct: 479  E-KALNESPELRELYDQRPEVRKLIDTAAALEGMPRHASTHAAGVVITPEPLTNYLPLYK 537

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606
                    TQF M  +E+ GL+K D LGL+TLT++  +L  + +   +  D+  IP DD 
Sbjct: 538  A-TDGPVTTQFAMGTVEELGLLKMDLLGLRTLTVISDALRLIKESTGEELDIERIPVDDQ 596

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664
            +TY +L    T G+FQLESSGMR  L  ++P+  EDI+ALV+LYRPGP+ + +   +   
Sbjct: 597  KTYQMLARGETAGVFQLESSGMRSILRDLRPEVFEDIVALVALYRPGPLGSGMVDDFIKN 656

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G +K   +HP ++P+LK+T GVI+YQEQVM+IA  L+G+SL EAD+LRRAMGKK  E 
Sbjct: 657  KHGFKKTKYLHPRLEPILKDTYGVILYQEQVMRIASDLAGFSLGEADLLRRAMGKKKPEI 716

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +   + +FI GA++NG+    A  IF+L+  FA YGFNKSH+AAYA++SYQTA++K +YP
Sbjct: 717  IAGLRSQFIEGAARNGVDGETAGQIFDLMEYFAGYGFNKSHSAAYALVSYQTAYLKANYP 776

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            ++F+AA +T   DN +K+  + ++ R+  I+++PP VN     F V  N+I + LAA+K 
Sbjct: 777  LQFMAALLTSVKDNTDKVAAYIEECRRLGIEVLPPDVNESRESFTVAGNKIRFGLAAVKN 836

Query: 845  VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG      I+ A   D PF    DFC R+D++ +N+RVLESL+  GA D  GY R QL+ 
Sbjct: 837  VGMGAVDSIIRAREKDGPFSDYADFCRRLDTRVVNKRVLESLIKCGAFDSLGYRRAQLMA 896

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFY 962
            ++D+    AQ  ++ R N   ++     G+     I+  +            E+  LG Y
Sbjct: 897  AVDSGLALAQQSQRERENGQLSLLDFFGGSTDSVSISFPEVGEYPEDELLAMEKETLGLY 956

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             SGHPL  Y+  L ++      E       + + L  ++   ++  TR+G  + ++T  +
Sbjct: 957  ISGHPLSRYREALNRLTTVKTVEITDLPDNSEVVLGGLITDVKKINTRRGEVMAFLTLED 1016

Query: 1023 PAKEYEANFFP 1033
                 E   FP
Sbjct: 1017 LTGTVEVVVFP 1027


>gi|77918826|ref|YP_356641.1| DNA polymerase III subunit alpha [Pelobacter carbinolicus DSM 2380]
 gi|77544909|gb|ABA88471.1| DNA polymerase III, alpha subunit [Pelobacter carbinolicus DSM 2380]
          Length = 1156

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 434/1042 (41%), Positives = 619/1042 (59%), Gaps = 23/1042 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +EK P FVHL VH+ YSLL+GA+ + +++ +      PA+AITD  N+F A+EF  K   
Sbjct: 1    MEKVP-FVHLHVHTQYSLLDGAIRIGDLIKRAEDCGMPAVAITDHGNMFGAVEFFSKLKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            + ++PI+GC++ +      + +N           +VLL    EGYQ L  +VS  Y  + 
Sbjct: 60   SSVKPIVGCEVYVAPGSRFEKSN--VRGGDKAYHLVLLCQDIEGYQNLCRMVSAGY-REG 116

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLY 183
                 RI    L++   +GLI LT    G +         + A  R      +F + RLY
Sbjct: 117  FYYKPRIDWDLLRKY-NKGLIALTACLGGELPSLLMQGKHEQAVARARDMAAIFDENRLY 175

Query: 184  VNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ +   ++      ++ +     LPLVATN+  +L+ E   AH+VL+ V     +  
Sbjct: 176  LELQENFIAEQKPVNEGLIAIGKELGLPLVATNDCHYLTRESAAAHEVLLCVQTGKTMDD 235

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             DR R    + YLK   EM  +F   PEAL NTV IA RC+  L       P++ +    
Sbjct: 236  PDRFRFSNDEFYLKTPEEMAELFHYAPEALANTVAIADRCNLELDFDTYHFPQYEKP--- 292

Query: 302  DIQKEEENELRNKAVAGLEVRLAQG----AIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
              +K  +  L   +  GLE RLA+             + Y  RL  EL  I  M F GYF
Sbjct: 293  -AEKTLDQVLEEDSWRGLEERLAEIRKVRPDFSAEEEKVYHDRLVRELECINSMGFPGYF 351

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK N IPVGPGRGS AGS+ AYA+ ITDIDP+ ++LLFERFLNP+R+SMPD
Sbjct: 352  LIVADFINWAKDNGIPVGPGRGSAAGSLVAYAIRITDIDPIPYNLLFERFLNPERVSMPD 411

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DFC   R++VI YV+ KYG E VAQIITFG++ AK  +RDVGRAL M Y  VDR+ K
Sbjct: 412  IDVDFCIYGREDVIEYVRQKYGEENVAQIITFGTMMAKGVIRDVGRALNMSYGDVDRIAK 471

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L+P      +    +  + R +E +  DP V +LL+I+  LEGL RHASTHAAG+V+  +
Sbjct: 472  LVPTVLNITLKEA-LEQEPRLQELQDKDPQVKQLLDIALTLEGLTRHASTHAAGVVVTPK 530

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596
            PLS+ +P+Y D +S   VTQF MK++E+ GL+KFDFLGLKTLT++  ++  + +    + 
Sbjct: 531  PLSEYLPLYTDPKSGGQVTQFPMKYVEQIGLVKFDFLGLKTLTVIANAVRLIHEGNDPEF 590

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL L+  DD +TY LL+   T G+FQLESSGM++ L  ++P C EDIIA+ +LYRPGP+ 
Sbjct: 591  DLKLVGDDDPDTYRLLSAGETTGVFQLESSGMKELLVKLKPSCFEDIIAVCALYRPGPLG 650

Query: 657  NIVVYNN--RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +V +   RK+GK++I    P ++P+LK+T GVI+YQEQVM IAQ+L+ YSL  AD+LR
Sbjct: 651  SGMVDDFILRKHGKKEITYDFPQLEPILKDTYGVIVYQEQVMLIAQVLARYSLGGADLLR 710

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQKE F+SGA +N +    A  +F+L+ KFA YGFNKSH+AAYA+++Y
Sbjct: 711  RAMGKKKPEEMAKQKEIFMSGARENELDVKKAEAVFDLMEKFAAYGFNKSHSAAYALVAY 770

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TA++KTHYPVEF+AA +T +M+N EK+ K   + R   I+++PP +N     F V DN 
Sbjct: 771  HTAYLKTHYPVEFMAALLTEDMENTEKVIKNINEVRSMGIEVLPPDINASSSSFTVHDNA 830

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I + L A+KGVG      I+E   ++PF +L +FC RVD +K+N++V+E+L+  GA D  
Sbjct: 831  IRFGLGAVKGVGGAAIDAILEVRQEQPFTTLHEFCERVDLRKVNKKVVEALIKCGAFDSL 890

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT---LEKFSVENSSVR 951
            G  R Q L  L+   +  Q V++ +     ++F  ++       +   L +    +  V+
Sbjct: 891  GGHRAQYLVVLEEAMEIGQKVQREKAEGQASLFGTDEIVSQRGTSYGVLPEMEEWSDKVK 950

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               E+  LGFY +GHPL  Y+ ++R+       +         +RL  MV   +   T+K
Sbjct: 951  LGFEKESLGFYITGHPLGRYQEVIRRFANCTTADVAERADKEEVRLCGMVSGIKDLVTKK 1010

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G R+ +VT  + +   E   FP
Sbjct: 1011 GERMAFVTLEDLSGFVEMVVFP 1032


>gi|319790471|ref|YP_004152104.1| DNA polymerase III, alpha subunit [Thermovibrio ammonificans HB-1]
 gi|317114973|gb|ADU97463.1| DNA polymerase III, alpha subunit [Thermovibrio ammonificans HB-1]
          Length = 1150

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1035 (38%), Positives = 616/1035 (59%), Gaps = 16/1035 (1%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   FVHL +HS YS+L+GA+ + +++ K      PA+AITD  N+F++ E  +    
Sbjct: 1    MVRKGDFVHLHLHSQYSILDGAIKVKDLVKKAKELGMPAVAITDHGNMFASYELYKACKE 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I          +G         ++LL    +G + L++L +  +  + 
Sbjct: 61   EGIKPIIGQEFYIAKGSRFDR-KKGGEGEKGSYHLILLAKNDKGLKNLMKLSTIGFT-EG 118

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI L+    G +   +     + A +    +K+LFG+  Y+
Sbjct: 119  FYYKPRIDKEVLEKY-SEGLIALSACIQGEVPLLYLMGKEEEARRAAQWYKELFGEDFYL 177

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQ H   ++ +    +++LA   ++ LVATN++ +L++ED+EAHDVL+ +     +S +
Sbjct: 178  ELQYHGIPEQKKANEFLIKLAKELDIELVATNDAHYLNKEDWEAHDVLLCLQTGKKLSDE 237

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R R  + + Y+K+  EM+ +F ++P+A+ NT++IA +    L+         + K    
Sbjct: 238  KRMRFPSREFYVKDAQEMLEVFKEVPQAVFNTLKIAEKVEERLETFENKGY-LLPKYEVP 296

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                 ++ LR  A  GLE R  +  I  G   Q Y +RL+ EL +I  M F GYFLIV D
Sbjct: 297  EGHTYDSFLRKLAEEGLERRFKEQGITDGEKKQVYYERLNHELKIINDMGFPGYFLIVWD 356

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK+N IPVGPGRGS AGS+ AYA+ ITDIDP+RF+LLFERFLNP+R++MPD D+D 
Sbjct: 357  FINWAKRNGIPVGPGRGSAAGSLVAYAIGITDIDPIRFNLLFERFLNPERVTMPDIDVDI 416

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQD RD VI+YV+ KYG ++V QIITFG+++ K  +RDVGR L +P  +VD+L KLIP+D
Sbjct: 417  CQDGRDRVIQYVREKYGEDKVCQIITFGTMKTKMVIRDVGRVLGIPPKEVDKLAKLIPDD 476

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                    A+      RE    D ++ RL++I+++L+GL R    HAAG+VI    L+  
Sbjct: 477  AKSV--EDAVERAPEIRELAEKDETIARLIKIAKRLQGLARQTGVHAAGVVIAPETLTDY 534

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLI 601
            +P+ +  +     TQ++M  +E  GL+K DFLGLKTLT++ +++  + +R  V++  + +
Sbjct: 535  IPLAK-SKDGDITTQYDMGQVEALGLLKMDFLGLKTLTIIDRTIKLIKERHGVEIVPTKL 593

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV-- 659
            P DD ET+ LL +  T+G+FQLES GMR  ++ ++P   EDIIALV+LYRPGP+++ +  
Sbjct: 594  PLDDPETFKLLQSGNTVGVFQLESRGMRNLMKRLKPSVFEDIIALVALYRPGPLNSGMAE 653

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  RK+G+E++  I P ++P+LKET G+ IYQEQ+MQIA +L+GYSL EAD+LRRAMGK
Sbjct: 654  SYIRRKHGQEEVDYIFPELEPVLKETYGLFIYQEQIMQIANILAGYSLGEADLLRRAMGK 713

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K KE M++Q+  F+S A + G  +     +F+ +AKFA+YGFNKSH+AAY  ++Y TA++
Sbjct: 714  KKKEIMEEQRSIFVSRAVERGYPREKIEKLFDDIAKFAEYGFNKSHSAAYGFLAYVTAYL 773

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYP E  A  M+++ D  ++I KF +D ++  I ++PP +N     F++    I + L
Sbjct: 774  KAHYPKELFATMMSIDFDKTDEIVKFIKDCKENGINVLPPDINRSGAYFEIEGEAIRFGL 833

Query: 840  AAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            A IKGVG   A HI E   +   F  L DFC RVD K +NR+V+E+L+ AGA D  G +R
Sbjct: 834  AGIKGVGEKAALHIEEVRKEGGEFKDLFDFCRRVDLKVVNRKVIEALIKAGAFDSTGINR 893

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
               L +LD     AQ ++K+++    ++F   +     ++   +       V+ E E++ 
Sbjct: 894  ASNLAALDRAMNAAQSIQKSQSKGLLSLFGEAESIV--QVEFPEVEEWPERVKLEYERQA 951

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +GFY SGHPL  +K I+  +      E      G  + LA  +   + ++T++G     V
Sbjct: 952  IGFYLSGHPLLEFKEIVT-LAFDSTAEKEEWKDGQELTLAGAITDVKLRRTQRGDLWATV 1010

Query: 1019 TFSEPAKEYEANFFP 1033
              ++         FP
Sbjct: 1011 ELTDLDGSTSVLVFP 1025


>gi|148264552|ref|YP_001231258.1| DNA polymerase III, alpha subunit [Geobacter uraniireducens Rf4]
 gi|146398052|gb|ABQ26685.1| DNA polymerase III, alpha subunit [Geobacter uraniireducens Rf4]
          Length = 1157

 Score =  857 bits (2214), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1039 (39%), Positives = 624/1039 (60%), Gaps = 20/1039 (1%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++ +FVHL +H+ YSLL+GA+ L +++ K    + PA+AITD  ++F A+EF  K   
Sbjct: 1    MSEA-NFVHLHLHTQYSLLDGAIRLGDLVKKAKGYEMPAVAITDHGSMFGAIEFYTKCKD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG ++ I         +       +   ++LL    +GY+ L  LVS  Y  + 
Sbjct: 60   KGIKPIIGSEVYIAPGSRFSKESGNGHESTSSYHLILLCENLQGYKNLSWLVSAGY-KEG 118

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L +  +EGLI L+    G +      N  + A      + ++F DR Y+
Sbjct: 119  FYYKPRIDKEILAQ-HSEGLIALSACLKGEVAYQCGRNRVEDAIATARWYSEIFPDRYYI 177

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQ +   ++     +++ LA    LPLVATN+  +L+ ED +AH+VL+ +     ++  
Sbjct: 178  ELQENTLPEQDLVNKRLLDLAAELSLPLVATNDCHYLNREDAKAHEVLLCIQTGKTMNDP 237

Query: 244  DRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +R   +  + Y K+  EM + F   PEA+ NTV IA RC+  L       P++I+     
Sbjct: 238  NRMHFSAEEFYFKSPQEMAAAFHYAPEAIANTVRIAERCNLELDFKTYHFPQYIKP---- 293

Query: 303  IQKEEENELRNKAVAGLEVR----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              K  ++ L  ++  GL+ R     A+         Q Y +RL  EL+ I +M F GYFL
Sbjct: 294  ADKTLDDVLEEQSYEGLKERLVTVRAKYPDITPEQEQGYYERLRIELDCIKQMGFPGYFL 353

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVADFI WAK + IPVGPGRGS AGS+ AY++ ITDIDP+ ++LLFERFLNP+R+SMPD 
Sbjct: 354  IVADFINWAKDHGIPVGPGRGSAAGSLVAYSIRITDIDPIPYNLLFERFLNPERISMPDI 413

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFCQDRR+EVI+YV  KYG ++V QIITFG++ A+  LRDVGRAL M Y  VD++ KL
Sbjct: 414  DVDFCQDRREEVIQYVTEKYGRDKVCQIITFGTMAARGVLRDVGRALDMAYGDVDKIAKL 473

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            +P      +    +  + +  E   AD  V  LL+++  LEGL RHASTHAAG+V+    
Sbjct: 474  VPEVLGITLDKA-LQQEPKLNELAAADRRVKELLDVALCLEGLARHASTHAAGVVVAPDV 532

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            L +  P+Y+D ++    TQ++MK++EK GL+KFDFLGLK LT++  ++  +   +    D
Sbjct: 533  LEEFCPVYKDQKNGSITTQYSMKYVEKIGLVKFDFLGLKNLTVIHNAVKIIRAGKDPAFD 592

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++L+  DD E+Y LL +  T G+FQLESSGM+  L  ++P C EDIIA+ +LYRPGP+ +
Sbjct: 593  ITLLRDDDEESYRLLQSGNTTGVFQLESSGMQGLLVKLKPSCFEDIIAVCALYRPGPLGS 652

Query: 658  IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +   + +RK+GK+K+V   P ++P+LK+T GVI+YQEQVMQI++ L+GYSL +AD+LRR
Sbjct: 653  GMVDDFIDRKHGKKKVVYDLPQLEPILKDTYGVIVYQEQVMQISRTLAGYSLGQADLLRR 712

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  E M K+K  F++GA + GI    A +IF+L+AKFA+YGFNKSH+AAYA+++YQ
Sbjct: 713  AMGKKDPEVMAKEKIPFLAGAKEQGIDPKKAESIFDLMAKFAEYGFNKSHSAAYALVAYQ 772

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYPVEF+AA +T +M N +K+ K   D R   I+++PP +N     F+V    I
Sbjct: 773  TAYLKAHYPVEFMAALLTEDMGNTDKVIKNISDCRDMGIEVLPPDINASDHSFRVLGKSI 832

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             + L A+K VG +    I+E+     F  + DFC RVD +++N+RV+ESLV  GA D  G
Sbjct: 833  RFGLGAVKNVGESAIEAIIESRKSGSFADIYDFCERVDLRRVNKRVVESLVKCGAFDSTG 892

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRF 952
              R  L+ +L++     Q +++ R +   ++F   +   G  + K +L      +  +  
Sbjct: 893  ARRAPLMAALEDAMVLGQKIQQERDSAQVSLFGVAEIVRGNGNGKGSLPDVPEWDDKLLL 952

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              E+  LGFY +GHPLD Y   +++       +         ++L  +VV+K++  T+KG
Sbjct: 953  NQEKEALGFYITGHPLDRYSSQIKRFATVHTSDFGEISDRAEVKLCGIVVTKKEFITKKG 1012

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
             R+ +VT  +     E   
Sbjct: 1013 ERMAFVTLEDLHGSVEVVV 1031


>gi|222056375|ref|YP_002538737.1| DNA polymerase III, alpha subunit [Geobacter sp. FRC-32]
 gi|221565664|gb|ACM21636.1| DNA polymerase III, alpha subunit [Geobacter sp. FRC-32]
          Length = 1156

 Score =  857 bits (2214), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1037 (40%), Positives = 619/1037 (59%), Gaps = 19/1037 (1%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL +H+ YSLL+GA+ L +++ K+   + PA+AITD  N+F A+EF  K    G
Sbjct: 2    SQPDFVHLHLHTQYSLLDGAIRLGDLIKKVKGYEMPAVAITDHGNMFGAIEFYTKCKDKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG ++ I         +       +   +VLL    +GY+ L  LVS  Y  +   
Sbjct: 62   IKPIIGSEVYIAPGSRFSKESGNGHESTSSYHLVLLCQNLQGYRNLSWLVSAGY-KEGFY 120

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               RI    L E  +EGLI L+    G +      N  + A      + +LF  R Y+ L
Sbjct: 121  YKPRIDKEILAE-HSEGLIALSACLKGEVAYQCGRNRIEDAVATARWYSELFPGRYYIEL 179

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q +   ++     +++++A    LPLVATN+  +L+ ED +AH+VL+ +     ++  + 
Sbjct: 180  QENTLPEQDVANKRLLEVASELSLPLVATNDCHYLNREDAKAHEVLLCIQTGKTMNDPNH 239

Query: 246  PRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               +  + Y K+  EM + F   PEA+ NTV IA  C F L       P++I+       
Sbjct: 240  MHFSAEEFYFKSPQEMAAAFHYAPEAIANTVRIAESCDFELDFKTYHFPQYIKP----AD 295

Query: 305  KEEENELRNKAVAGLEVR----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            K  ++ L  +A  GL+ R     A+         + Y  RL  EL+ I +M F GYFLIV
Sbjct: 296  KSLDDVLEEQAYEGLKDRLVAVRAKYPDLTADQEKGYYDRLRIELDCIKQMGFPGYFLIV 355

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFI WAK + IPVGPGRGS AGS+ AY++ ITD+DP+ ++LLFERFLNP+R+SMPD D+
Sbjct: 356  ADFINWAKDHGIPVGPGRGSAAGSLVAYSIRITDLDPIPYNLLFERFLNPERISMPDIDV 415

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQDRR+EVI+YV  KYG ++V QIITFG++ A+  LRDVGRAL M Y  VDR+ KL+P
Sbjct: 416  DFCQDRREEVIQYVTEKYGRDKVCQIITFGTMAARGVLRDVGRALDMSYGDVDRIAKLVP 475

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                  +    +  + +  E   ADP +  LL+++  LEGL RHASTHAAG+V+    L 
Sbjct: 476  EVLGITLEKA-LQQEPKLNELAEADPRIKELLDVALCLEGLARHASTHAAGVVVAPDVLE 534

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
               P+Y+D ++    TQ++MK++EK GL+KFDFLGLK LT++  ++  +   +    D++
Sbjct: 535  AFCPVYKDQKNGSITTQYSMKYVEKIGLVKFDFLGLKNLTVIHNAVKLIRAGKNADFDIT 594

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            ++  DD ETY LL +  T G+FQLESSGM+  L  ++P C EDIIA+ +LYRPGP+ + +
Sbjct: 595  VLRDDDEETYKLLQSGNTTGVFQLESSGMQGLLVKLKPSCFEDIIAVCALYRPGPLGSGM 654

Query: 660  --VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
               + +RK+G++K+V   P ++P+LK+T GVI+YQEQVMQI+++L+GYSL +AD+LRRAM
Sbjct: 655  VDDFIDRKHGRKKVVYDLPQLEPILKDTYGVIVYQEQVMQISRVLAGYSLGQADLLRRAM 714

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  E M K+K  F++GA K  I    A  IF+L+AKFA+YGFNKSH+AAYA+++YQTA
Sbjct: 715  GKKDPEVMAKEKIPFLAGAEKQNIDPKKAEAIFDLMAKFAEYGFNKSHSAAYALVAYQTA 774

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++KTHYPVEF+AA +T +M + +K+ K   D R   I+++PP +N   + F+V  N I +
Sbjct: 775  YLKTHYPVEFMAALLTEDMGSTDKVIKNISDCRDMGIEVLPPDINASDLSFRVLGNSIRF 834

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L A+K VG +    I+EA     F  + DF  RVD +K+N+RV+ESL+  GA D  G  
Sbjct: 835  GLGAVKNVGESAIEAILEARKTGSFADIFDFGERVDQRKVNKRVVESLIKCGAFDSTGAK 894

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRFEN 954
            R  L+  L++     Q +++ R +   ++F  E+   G  + K +L      +       
Sbjct: 895  RAPLMAGLEDAMSLGQKIQQERESAQVSLFGVEEMTRGNGNGKGSLPDLPEWDDKFLLNQ 954

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  LGFY +GHPLD Y   +R+       +         +++  +VV+K++  T+KG R
Sbjct: 955  EKEALGFYITGHPLDRYSAQIRRFASVHTSDFAEIKDKAEVKICGIVVAKKEFITKKGDR 1014

Query: 1015 IGWVTFSEPAKEYEANF 1031
            + +VT  +     E   
Sbjct: 1015 MAFVTLEDLHGTVEVVV 1031


>gi|121534258|ref|ZP_01666082.1| DNA polymerase III, alpha subunit [Thermosinus carboxydivorans Nor1]
 gi|121307028|gb|EAX47946.1| DNA polymerase III, alpha subunit [Thermosinus carboxydivorans Nor1]
          Length = 1129

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/1031 (38%), Positives = 610/1031 (59%), Gaps = 27/1031 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YSLL+GA  + +++ +      PA+AITD  N++  ++F ++A AAGI+P
Sbjct: 2    SFVHLHVHTEYSLLDGASRIKHLVCRAKELGMPALAITDHGNMYGVIDFYKQARAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +   + T            +VLL  T +GY+ LIELVSR    +      
Sbjct: 62   IIGCEVYVAPRSRWEKTA---VEGEAYYHLVLLAETDQGYRNLIELVSRAN-SEGFYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
            R+    L+   + GLI L+G  +G I         + AE     ++ +FG R  ++ LQ 
Sbjct: 118  RVDKELLRTY-STGLICLSGCIAGEIPALLLKGDFEGAEALAHEYRDIFGPRNFFLELQD 176

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++    +Q+  LA    L LVATN+  ++ + D E HDVL+ +     V    R R
Sbjct: 177  HNLPEQKQVNAQLALLADKLGLGLVATNDIHYVDKGDAECHDVLLCIQTGKTVDDSGRMR 236

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + YLK+ +EM ++F   P+A+ NT+ IA RC   ++     LP F           
Sbjct: 237  FPNNEFYLKSPAEMAALFGWRPDAITNTLVIAERCQVSIEFGKLHLPEFPVPAG----LT 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  LR      L  R   G            +RL++EL VI +M +S YFLIV DF+ +
Sbjct: 293  ADEYLRRLCFERLPRRYPTGTAQAT-------ERLEYELAVIQKMGYSSYFLIVWDFVNF 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +IPVGPGRGS AGS+ +Y L IT+IDPL++ LLFERFLNP+R++MPD DIDFC +R
Sbjct: 346  ARSRDIPVGPGRGSAAGSIVSYLLGITNIDPLKYGLLFERFLNPERVTMPDIDIDFCYER 405

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R ++I YV  +YG + VAQIITFG++ A+AA+RDVGRAL +PY +VDR+ KLIP +    
Sbjct: 406  RGQIIDYVAKRYGADHVAQIITFGTMAARAAVRDVGRALNLPYGEVDRIAKLIPTELGTT 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+   +  RE    D  V +LL+++  +EGL RHASTHAAG+VI    L+Q VP+ 
Sbjct: 466  L-QRALEVSTELRELYETDDKVRKLLDLAMAVEGLPRHASTHAAGLVIAKEKLTQYVPLQ 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                     TQ++   +E+ GL+K D LGL+TLT++  +L+ + + RG+++D+  IP DD
Sbjct: 525  N-STEGFVTTQYDKDRVEEIGLLKMDLLGLRTLTVIGDTLELVRKSRGIRLDIDAIPLDD 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
             +T  LL    TLG+FQ+ES+GM   ++ ++P+  +D+I LV+LYRPGP+ + +   +  
Sbjct: 584  AKTCQLLANGETLGVFQMESAGMTNLVKELKPERFDDLIPLVALYRPGPLGSGMVADFIA 643

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             ++GK+++   HPL++P+LKET GVI+YQEQVMQIA +++G++L +AD+LRRAMGKK  E
Sbjct: 644  GRHGKKEVQYPHPLLEPILKETFGVILYQEQVMQIASVMAGFTLGQADLLRRAMGKKKHE 703

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++ Q++ F+ GA++ GI    A NIFEL+A FADYGFNKSH+AAYA+++YQTA++K HY
Sbjct: 704  VLEAQRDNFMRGAAERGIDSATAANIFELMAHFADYGFNKSHSAAYALVAYQTAYLKAHY 763

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P EF+AA +T  M   EK+  + ++ R+  I ++PP +N    +F V    I + LA +K
Sbjct: 764  PQEFMAALLTSVMGANEKVGLYIEECRRLGIPVLPPDINASRENFTVDGQAIRFGLAGVK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG     +I+ A  +   F SL DFC+RVD + +N+RV+ESL+  GA D  G+ R QLL
Sbjct: 824  NVGDAAIANIIAARDSGGKFTSLVDFCTRVDMRTVNKRVIESLIKCGAFDSLGWRRSQLL 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              LD   + A   +++  +    +F+ E    +D I                E+ + GFY
Sbjct: 884  AILDQAVEAAASRQRDLASGQMGLFSDETVNSADDIVPPPLEELPKEQLLAMEKEMTGFY 943

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             +GHPLD Y+  L        +E +    G  + +A ++   ++  T+ G  + + T  +
Sbjct: 944  VTGHPLDKYRDQLNNY--TKIDELMQYADGQTVCIAGLIAGAKRITTKGGEMMCFATLED 1001

Query: 1023 PAKEYEANFFP 1033
               + E   FP
Sbjct: 1002 FTNQVEVVIFP 1012


>gi|258514118|ref|YP_003190340.1| DNA polymerase III DnaE [Desulfotomaculum acetoxidans DSM 771]
 gi|257777823|gb|ACV61717.1| DNA polymerase III, alpha subunit [Desulfotomaculum acetoxidans DSM
            771]
          Length = 1145

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1034 (38%), Positives = 612/1034 (59%), Gaps = 26/1034 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PSFVHL VH+ YSLL+GA  +  ++ K  +    A+AITD   +F  ++F +     GI+
Sbjct: 2    PSFVHLHVHTEYSLLDGAARIKEVVKKAKSLGMSALAITDHGVMFGVVDFFKACKKEGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+GC++ +  +     T +       +  +VLL     GY+ L+ LVS  +  +     
Sbjct: 62   PILGCEVYVAPRSRHDRTPR---VDDNLYHLVLLAKNETGYRNLLNLVSISFT-EGFYYK 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
             R+    L    +EGLI L+G  +G +      +  + A      + K+FG D  Y+ +Q
Sbjct: 118  PRVDKEVLAMY-SEGLIALSGCIAGEVAEYILKDLPEQARAAAAEYLKIFGEDNYYLEIQ 176

Query: 188  RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   ++ +   ++V+++    +PLVATN+  ++++E+ E  DVL+ +     V    R 
Sbjct: 177  DHSFPEQKKANRELVKISEELNIPLVATNDVHYVAKENAEMQDVLLCIQTGKTVDDPKRM 236

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  + + YLK+  EM  +F +LP+AL+NTV IA +C   ++     LP +   E      
Sbjct: 237  KFQSQEFYLKSPEEMAELFPELPQALQNTVSIADKCEISMEFGQLHLPFYQVPEG----H 292

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E+ LR     GL  R            +  RQR++FEL+VI +M +S YFLIV DFI 
Sbjct: 293  TVESYLRELCEKGLLDRYG------AAPEESVRQRMEFELSVIEQMGYSAYFLIVWDFID 346

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A++N +PVGPGRGS AGS+ +Y L IT++DPL++ LLFERFLNP+R+SMPD DID C +
Sbjct: 347  YARQNGVPVGPGRGSAAGSLVSYVLGITNLDPLKYDLLFERFLNPERVSMPDIDIDICYE 406

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR++VI YV  KYG ERVAQI TFG++ AK A+RDVGRAL M Y +VDR+ KL+P +   
Sbjct: 407  RRNKVIEYVVRKYGAERVAQIATFGTMAAKGAIRDVGRALAMSYGEVDRVAKLVPAELHM 466

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A++++    EA   +P V RL++ ++ LEG+ RHASTHAAG+VI  +PL+  +P+
Sbjct: 467  TIE-KALSENQDLLEAYNNEPEVRRLIDTAKGLEGMPRHASTHAAGVVITKQPLTHYLPL 525

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFD 604
            Y+        TQF  + +E+ GL+K D LGL+TLT++  ++  + +R     D+  I  +
Sbjct: 526  YK-STDGPVTTQFAKEPVEELGLLKMDLLGLRTLTVIADAVAEVNKRAGSPLDIDKITLE 584

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662
            D  T+ LL+    +G+FQLESSGMR  L  ++P+  EDI+ALV+LYRPGP+ + +   + 
Sbjct: 585  DKNTFDLLSRGEGIGVFQLESSGMRAILRDLKPEVFEDIVALVALYRPGPLGSGMVDDFI 644

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              K+G +K+  +HP+++P+LK+T GVI+YQEQVM+I+  L+G+SL EAD+LRRAMGKK  
Sbjct: 645  KNKHGLQKVSYLHPILEPILKDTYGVILYQEQVMRISSDLAGFSLGEADLLRRAMGKKKP 704

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E +   + +F+ GA+K  +   +A  +F+L+  FA YGFNKSH+AAYA++SYQTA++K +
Sbjct: 705  EVIAGLRSQFMEGAAKKDVDPEVAGKVFDLMEFFAGYGFNKSHSAAYALVSYQTAYLKAN 764

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP EF+AA +T   DN +K+  + ++ R+  I ++PP VN     F V  ++I + LAA+
Sbjct: 765  YPAEFMAALLTSVRDNSDKVAVYIEECRRMGIVVLPPDVNESRDGFTVVGDKIRFGLAAM 824

Query: 843  KGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K VG      I+       PF +  DFC+R+D++ +NRRVLESL+  GA D  G+ R QL
Sbjct: 825  KNVGLAAVYSIISMREQGGPFKNYADFCNRLDTRVVNRRVLESLIKGGAFDSLGHRRAQL 884

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT--LEKFSVENSSVRFENEQRVL 959
            +  +D     AQ  +++R +   ++F   +      ++  L   +    S     E+  L
Sbjct: 885  MAVVDTGLSIAQQAQRDRNSGQMSLFEFLEEEEEYNLSFVLPDIAEYLYSEMLALEKESL 944

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G Y SGHPL  Y+ +LR+       E      G  + L  ++++ +Q  T+KG  + +V 
Sbjct: 945  GLYISGHPLAEYREVLRQNDTVNAGELPDFTEGETVALGGLIINYKQITTKKGDAMAFVN 1004

Query: 1020 FSEPAKEYEANFFP 1033
              +     E   FP
Sbjct: 1005 LEDLTGVVEVVIFP 1018


>gi|296133826|ref|YP_003641073.1| DNA polymerase III, alpha subunit [Thermincola sp. JR]
 gi|296032404|gb|ADG83172.1| DNA polymerase III, alpha subunit [Thermincola potens JR]
          Length = 1146

 Score =  855 bits (2209), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1034 (37%), Positives = 608/1034 (58%), Gaps = 26/1034 (2%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  F+HL VH+ YSLL+GA  + +++   A     A+A+TD  ++F  ++F +    AGI
Sbjct: 2    AADFIHLHVHTEYSLLDGAARIRDLVSAAAEKGMKALAVTDHGSMFGVIDFYKACKKAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+GC++ +  +    M ++          +VLL     GY+ L+ +VS  Y       
Sbjct: 62   KPILGCEVYVAPRS---MDDREPGRDDANYHLVLLAENETGYKNLLHIVSEAYTRG-FYY 117

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              R   + L++  +EGLI L+    G I  A     S  A      ++ +FG    ++ L
Sbjct: 118  KPRTDKAALRK-HSEGLIALSACLGGEIATAIVNGQSDKARAAAREYEDIFGKGNFFLEL 176

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   ++     ++V++     +PLV TN+  ++ + D E  DVL+ +     +   DR
Sbjct: 177  QDHGLENQRMVNMELVKIGRELNIPLVVTNDVHYVRKSDAEVQDVLLCIGTGRTMEDADR 236

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                T + YLK+  EM  +  + PEAL NTV IA RC+         LP ++  E     
Sbjct: 237  MEFGTSEFYLKDAREMALLAGEYPEALANTVNIAARCNVEFDFSQNYLPDYMIPEG---- 292

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               E+ LR   + GL+ R            ++ R+RL++EL VI  M F GYFLIV DF+
Sbjct: 293  HTVESYLRQLCLDGLKKRYPNAG-------EEVRRRLEYELQVINDMGFPGYFLIVWDFV 345

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A++  I VGPGRGS AGS+ AY L IT+IDPL++ LLFERFLNP+R++MPD DIDFC 
Sbjct: 346  RFAREKGILVGPGRGSAAGSLVAYTLGITNIDPLKYDLLFERFLNPERVTMPDIDIDFCY 405

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            ++R+EVIRYV  +YG +RVAQIITFG++ A+AA+RDVGRAL MPY++VDR+ K+IP +  
Sbjct: 406  EKREEVIRYVIERYGADRVAQIITFGTMAARAAIRDVGRALNMPYAEVDRVAKMIPGELG 465

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +    +      RE    +P V +L+++++ +EG+ RHASTHAAG+VIG  PL++ +P
Sbjct: 466  MTLDKA-LEASPELRELYETEPKVHKLVDMARAIEGMPRHASTHAAGVVIGREPLTRYLP 524

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            +YR     +  TQF  + +E+ GL+K D LGL+TLT++  +++ +      ++D+  IP 
Sbjct: 525  LYRSS-DGVVTTQFAKETVEEIGLLKMDLLGLRTLTVIGDAVNIIKHTTGDEIDIDNIPL 583

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661
            DD  TY +L     +G+FQLESSGMR  L+ ++P+ ++DIIALV+LYRPGP+ + +   +
Sbjct: 584  DDRATYEMLGRGDAIGVFQLESSGMRAILKELKPEVLDDIIALVALYRPGPLGSGMVEDF 643

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK+G+ +I  +HP ++P+LK+T GVI+YQEQVM+IA  L+G++L EAD+LRRAMGKK 
Sbjct: 644  IRRKHGQSEIKYLHPALEPILKDTYGVILYQEQVMRIASDLAGFTLGEADLLRRAMGKKK 703

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E +   + +FI GA KN I +TIA  IF+L+  FA YGFNKSH+AAYA++SYQTA++K 
Sbjct: 704  PEVIAGLRNQFIEGARKNNIEETIAGQIFDLMEYFAGYGFNKSHSAAYALVSYQTAYLKA 763

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +YPV ++AA +T    + +K+  + ++ ++  I I+PP +N   V+F V  ++I + LAA
Sbjct: 764  NYPVAYMAALLTSVAGSSDKVAVYIEECKRMGIDILPPDINESLVNFTVVGDKIRFGLAA 823

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            +K VG     HI+   + K F SL DFC R + + + +RV+ESL+  GA D    +R QL
Sbjct: 824  VKNVGRQAIEHIIAVRSKKKFASLLDFCERAEHRVVTKRVIESLIKGGAFDSLTGNRRQL 883

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            L+ LD   ++A   +K+ +    ++F       +F  ++ L              E+ +L
Sbjct: 884  LEGLDRCLEWAAKRQKDLSTGQISLFDVYEGDSSFGGEVPLPPVPDFPQHELLAMEKEML 943

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G Y SGHPL+ Y+  L +       + V       + +  ++   ++  TR+G  +  + 
Sbjct: 944  GLYISGHPLEQYRRELAEKTTATTAQLVEMQDQEEVVIGGIIAGMRKITTRRGETMLLMN 1003

Query: 1020 FSEPAKEYEANFFP 1033
              +     E   FP
Sbjct: 1004 LEDLVGSVEVIVFP 1017


>gi|95930421|ref|ZP_01313157.1| DNA polymerase III, alpha subunit [Desulfuromonas acetoxidans DSM
            684]
 gi|95133461|gb|EAT15124.1| DNA polymerase III, alpha subunit [Desulfuromonas acetoxidans DSM
            684]
          Length = 1158

 Score =  854 bits (2205), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1039 (41%), Positives = 623/1039 (59%), Gaps = 15/1039 (1%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +E + +FVHL +HS YSLL+GA+ + N+++++   + PA+AITD  N+F A+EF  KA A
Sbjct: 1    MEHA-NFVHLHLHSQYSLLDGAIKIPNLIERVKEYKMPAVAITDHGNMFGAMEFYTKATA 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIGC++ +      + +N  +        +VLL     GY+ L  LVS  Y  + 
Sbjct: 60   AGVKPIIGCEVYVAPGRRTEKSN-ARGSSEASYHLVLLCQNKIGYRNLCYLVSTAY-REG 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLY 183
                 RI    L E   EGLI ++    G I           A  R     ++F  DR Y
Sbjct: 118  FYYKPRIDWDLLTEY-NEGLIAMSACLGGEIPTLINLGRPDDALARAEQMAQVFDDDRFY 176

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ +   ++    + ++ ++    LPLVATN+  +L  ED  AH+VL+ +     +  
Sbjct: 177  LELQENGIPEQATANTGLIDISGKLGLPLVATNDCHYLRREDAYAHEVLLCIQTGKTMDD 236

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            + R R      Y++   EM  +FS +P+AL+NTVEIA+RC+          P++ +    
Sbjct: 237  EKRMRFANDGFYVRTPDEMRELFSHVPQALDNTVEIAQRCNLDFDFDTYHFPQYEKPADK 296

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             + +  E   R+     L++  +          Q Y+ RL+ EL  I  M F GYF+IVA
Sbjct: 297  TLDEVLEEMARDGLEDRLKMIRSLNPDLSAEEEQVYQDRLERELKTIRDMGFPGYFIIVA 356

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK ++IPVGPGRGS AGS+ A+A+ ITDIDP+ + LLFERFLNP+R+SMPD D+D
Sbjct: 357  DFINWAKDHDIPVGPGRGSAAGSLVAFAIRITDIDPIPYDLLFERFLNPERISMPDIDVD 416

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC   R++VI+YVQ +YG   VAQIITFG+L AK  ++DVGRAL MPY +VD+L KL+P 
Sbjct: 417  FCIYGREKVIQYVQEEYGAPNVAQIITFGTLGAKGVIKDVGRALNMPYGEVDKLSKLVPA 476

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +   A+  + R +E   +D  V  LL ++  LEGL RHASTHAAG+V+   PL+ 
Sbjct: 477  VLNITLK-DALQQEPRIQEMAKSDVRVKELLNVALSLEGLTRHASTHAAGVVVTPNPLTD 535

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSL 600
             +P+Y D +S   VTQF M ++EK GL+KFDFLGLKTLT++  +L  +   +    DL++
Sbjct: 536  YLPLYTDQKSGGQVTQFPMSYVEKIGLVKFDFLGLKTLTVIDNALRLIHSAKNPDFDLNV 595

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            I  DD  TY LL+   T G+FQLESSGM++ L  ++P+C EDIIA  +LYRPGP+ + +V
Sbjct: 596  IGDDDEATYELLSHGDTTGVFQLESSGMKELLVKLKPNCFEDIIAACALYRPGPLGSGMV 655

Query: 661  YNN--RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             +   RK+G++ IV   P ++P+LK+T GVI+YQEQVM IAQ L+ YSL  AD+LRRAMG
Sbjct: 656  DDFILRKHGQKDIVYDFPQLEPILKDTYGVIVYQEQVMLIAQTLANYSLGGADLLRRAMG 715

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM+KQK  F+ GA +N +    A  +F+L+A FA YGFNKSH+AAYA+++Y TA+
Sbjct: 716  KKKPEEMEKQKVLFLKGAKENNLDPKKAEAVFDLMAMFAAYGFNKSHSAAYALVAYHTAY 775

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K HYPVEF+AA +T +M+N +K+ K   + R   I+++PP +N     F V +N + + 
Sbjct: 776  LKAHYPVEFMAALLTEDMENTDKVIKNIAEVRSMGIEVLPPDINASIRSFTVHENAMRFG 835

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L A+KGVGT     I+     D P+DSL DFC RVD  K+N++V+ESL+  GA D  G  
Sbjct: 836  LGAVKGVGTAALDSIIHVREVDGPYDSLNDFCERVDLGKVNKKVVESLIKCGAFDSLGGK 895

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG---TFSDKITLEKFSVENSSVRFEN 954
            R Q + +L++  +  Q V++ +    E++F  E+    + S    L   +  +  +R  N
Sbjct: 896  RAQYMDALESAMEIGQQVQREKQQGQESLFGMEEMVTRSGSSYGELPDVAEWDDKLRLNN 955

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  LGFY +GHPL  Y   +++         V       +R+  +V  K++  T+KG R
Sbjct: 956  EKEALGFYITGHPLSRYAEDIKRFATCDLSGLVERNDKEEVRVCGIVSGKKELVTKKGDR 1015

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + ++T  +     E   FP
Sbjct: 1016 MAFITLEDLTGSLEVVVFP 1034


>gi|258593588|emb|CBE69929.1| DNA polymerase III, alpha subunit [NC10 bacterium 'Dutch sediment']
          Length = 1146

 Score =  853 bits (2203), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1034 (41%), Positives = 618/1034 (59%), Gaps = 24/1034 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              FVHL VH+ YSLL+GA SL  ++ K    + PA+A+TD  NLF A++F   A   GI+
Sbjct: 4    SDFVHLHVHTQYSLLDGACSLETLVAKAKEYKMPALAMTDHGNLFGAIDFYTLAMKEGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG ++ I      + +NQ  + +     I LL     GY+ L++LVS  YL +     
Sbjct: 64   PIIGSEVYIAPGSRFEKSNQD-SGYEGASHITLLAKDQVGYRNLMKLVSAGYL-EGFYYK 121

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
             RI      +   +GLI L+G  +    +A        A++ +  +    G +  ++ +Q
Sbjct: 122  PRIDRELFAQ-HCQGLIALSGCLNSEAAKALLDGDEARAKETVGWYMDALGRENYFLEVQ 180

Query: 188  RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   ++      V++LA   +LP+VATN+  + S+ED  AH+VL+ +     +  KDR 
Sbjct: 181  NHGIAEQKTVTDGVLRLAKAFDLPIVATNDLHYPSKEDARAHEVLLCIQTGKTIQDKDRW 240

Query: 247  RVTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R + D +     +EM  IF++LPEA+ NT+ +A RC+  LQ     LPR+   E     +
Sbjct: 241  RFSTDQFYFKSAAEMKQIFAELPEAVRNTITVAERCNLQLQFGQLRLPRYQVPEG----Q 296

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E+ L + A  GL++R     +       +   RL +EL+VI +  FSGYFL+V DFI+
Sbjct: 297  TLESYLAHLAWEGLKIRYPDANV-------EVEARLKYELDVIQKTGFSGYFLVVWDFIK 349

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK   I VGPGRGS A S+ AY L IT+IDPLR+ L+FERFLNP+R+SMPD DIDF  D
Sbjct: 350  FAKDRGISVGPGRGSAAASLVAYCLNITNIDPLRYGLIFERFLNPERISMPDMDIDFSDD 409

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI YV  KYG + VAQIITFG++ AKA +RDVGR L MPY++VD++ KL+PN    
Sbjct: 410  RRDEVIEYVTRKYGADNVAQIITFGTMGAKAVIRDVGRGLGMPYAEVDKIAKLVPNRINI 469

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +    IA+     EA      V  L ++++ LEGL RHASTHAAG+VI   PL++ VP+
Sbjct: 470  SLDEA-IAESPPLTEAVQNRTEVGELWQVAKCLEGLTRHASTHAAGVVISGDPLTEHVPL 528

Query: 546  YRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            Y+D ++   P TQ+ MK IEK GL+K DFLGL+TLT++  +L+ +A  RG K+ +  IP 
Sbjct: 529  YKDPKAGSKPTTQYAMKAIEKIGLLKVDFLGLRTLTVIANTLELIASGRGDKITIEKIPL 588

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD   + LL+   T G+FQLESSGMR  +  ++P+ +ED+IALV+LYRPGP+  I  + N
Sbjct: 589  DDPAVFSLLSEARTFGVFQLESSGMRDLMRRLKPERLEDVIALVALYRPGPMVMIDDFIN 648

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RKNGK KI   HPL++ +LKET G+++YQEQVM+IA  L+G+S+ EADVLR+AMGKK  E
Sbjct: 649  RKNGKVKIRYDHPLMETILKETYGIMVYQEQVMRIASDLAGFSMGEADVLRKAMGKKDPE 708

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             MD+Q+++F+ GA   G+    A  IF+ +A FA Y FNK HA +YA+++YQTA++K HY
Sbjct: 709  MMDQQRKKFVDGAKVKGVQARTAEKIFDKMAPFAGYAFNKPHATSYALLAYQTAYLKAHY 768

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF+AA +T EM + + I K+  + +Q  I ++PP VN     F V   +I + L AIK
Sbjct: 769  PVEFMAALLTSEMADTDGIVKYIDECKQMGITVLPPDVNESESRFTVVGEQIRFGLVAIK 828

Query: 844  GVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG T  + I+       PF SL DFC RVD +  N+RV+ESL+  GA D  G +R QL+
Sbjct: 829  NVGETAIQSILATRRDKGPFRSLFDFCERVDLRLTNKRVIESLIKCGAFDSLGAARAQLI 888

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRFENEQRVL 959
               D   +     ++ R++   ++    +   G       L      + + R   E+  L
Sbjct: 889  AVADKAMEAGAGTQRERSHGQGSLLDVLEATGGLSQQAEALPAIPEWSPTQRLAAEKETL 948

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            GFY +GHPL  Y+ ++ K+G    +   A      + L A+V + ++  T+ G R+ +VT
Sbjct: 949  GFYVTGHPLADYRDVIAKVGAVTTDRLAACQDKETVTLCAIVSAVKEITTKSGDRMAFVT 1008

Query: 1020 FSEPAKEYEANFFP 1033
            F + A   EA  FP
Sbjct: 1009 FEDMAGTVEAVAFP 1022


>gi|302392623|ref|YP_003828443.1| DNA polymerase III catalytic subunit, DnaE type [Acetohalobium
            arabaticum DSM 5501]
 gi|302204700|gb|ADL13378.1| DNA polymerase III catalytic subunit, DnaE type [Acetohalobium
            arabaticum DSM 5501]
          Length = 1129

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/1034 (38%), Positives = 613/1034 (59%), Gaps = 30/1034 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              FVHL  H+ YSLL+GA  +  ++ + A    PA+AITD  N++ A+EF + A  AGI+
Sbjct: 2    SGFVHLHCHTEYSLLDGAARIGELVTQAADYGMPALAITDHGNMYGAVEFYKAAKDAGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG ++ +  +      NQ      +   +VLL    +GY+ L++LVS+ YL +     
Sbjct: 62   PIIGSEVYVAPESRF---NQKHNRADSPYHLVLLAKNNQGYRNLLKLVSKGYL-EGFYYK 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQ 187
             +I L  L++   EGLI L+G  +G I R       Q  ++ + T++ +FG+   Y+ LQ
Sbjct: 118  PQIDLELLRKY-NEGLICLSGCLAGRIARGLLNEQQQQVKEMISTYQDIFGENDFYLELQ 176

Query: 188  RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                  ++     +++L    ++PLVATN+  +L++ED +AHDVL+ +    +++ +DR 
Sbjct: 177  DQGLRKEKIINHSLIELGEEMDVPLVATNDVHYLNQEDAQAHDVLLCIQTGKLLTTEDRM 236

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +    + YLK+  EM  IFS++P+A+ENTVEIA+RC+  L      LP +   E    +K
Sbjct: 237  KFPNDEFYLKSGQEMADIFSEVPQAIENTVEIAKRCNVELDFDQTYLPYYDVPE----EK 292

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR   + G            G    + ++RLD+EL +I  M +  YFLIV DFI+
Sbjct: 293  NLSSYLRELCLKGARK-------RYGEVTDEVQERLDYELEIINEMGYPAYFLIVWDFIE 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK+  I VGPGRGS AGS+ +Y L ITDIDPL   L+FERFLNP R+SMPD DIDFC  
Sbjct: 346  YAKEKGIMVGPGRGSAAGSLVSYVLGITDIDPLEHGLIFERFLNPQRVSMPDIDIDFCYQ 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI YV  KYG +RVAQIITFG++ A+A +RDVGR L + Y+QVD++ KLIP D   
Sbjct: 406  RRDEVIDYVTEKYGQDRVAQIITFGTMAARAVVRDVGRVLDLSYAQVDKIAKLIPFDA-- 463

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                +A+      ++       +  L++ +QKLEGL RHASTHAAG+VI    L++  P+
Sbjct: 464  -DLDEALESSQELKDLCQKKDEIKELIDYAQKLEGLPRHASTHAAGVVISKEELTEYTPL 522

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFD 604
             ++       TQ+ M  +E  GL+K DFLGL+TLT++  +L+ + +      DL  IP D
Sbjct: 523  QQN--KGEVTTQYPMGDLEAIGLLKMDFLGLRTLTVINNTLEIIERTQGIKLDLDEIPLD 580

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662
            D +TY LL T  T G+FQ+ES+  ++ +  ++P   ED+IAL++L RPGP+ + +   + 
Sbjct: 581  DEQTYQLLQTGNTEGLFQIESNLFQRLIADLKPTRFEDLIALLALGRPGPLGSGMVDDFI 640

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R++G+ ++   H  ++ +L+ET GVI+YQEQVM+IA  ++GYSL EAD+LRR MGKK  
Sbjct: 641  KRRHGEAEVEYPHADLEEILEETYGVILYQEQVMRIANEIAGYSLGEADILRRGMGKKKP 700

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E + K +++FI GA   G S+ +A  +F+L+  F  YGFNKSH+AAYA +SY+TA++KT+
Sbjct: 701  ELLKKHRQKFIDGALDKGYSEELANELFDLMEYFGGYGFNKSHSAAYAFVSYRTAYLKTY 760

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YPVE++AA ++  M N +K+ ++ ++  +  I+++PP VN   V F V  +RI + L A+
Sbjct: 761  YPVEYMAALLSSIMGNSDKVARYIEECNRMGIEVLPPDVNESEVRFTVVGDRIRFGLEAV 820

Query: 843  KGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K VG      I+ A   +  F+SL DFC +V   K+N+RV+ESL+ AGA D  G  R Q+
Sbjct: 821  KNVGQKAIEEIIRARQEEGAFESLTDFCQKVFLGKVNQRVIESLIKAGAFDSLGAYRSQM 880

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            L  ++++ + A  ++K + N  ++   F +     + ++ L + S  +       E+  L
Sbjct: 881  LTVIEDLYEQAHKIQKEKGNGQQSFGDFLNADEFGNVEVKLPEMSEYSHDQLLAMEREYL 940

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G Y SGHP+D Y+ +L +   +             +R   ++ S  Q  T+ G  + ++ 
Sbjct: 941  GLYISGHPIDKYQDLLAENRFESIVAIKDLADKEEVRFGGIINSINQIITKNGKDMAFLE 1000

Query: 1020 FSEPAKEYEANFFP 1033
              +   + E   FP
Sbjct: 1001 LEDRTGQLEVVVFP 1014


>gi|20808235|ref|NP_623406.1| DNA polymerase III DnaE [Thermoanaerobacter tengcongensis MB4]
 gi|20516832|gb|AAM25010.1| DNA polymerase III alpha subunit [Thermoanaerobacter tengcongensis
            MB4]
          Length = 1148

 Score =  852 bits (2201), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1050 (36%), Positives = 600/1050 (57%), Gaps = 46/1050 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+G+  + +++ K       AIAITD   ++  ++F ++A A GI+PI
Sbjct: 5    FVHLHVHTEYSLLDGSCRIKDLIAKTKELGMKAIAITDHGAMYGVIDFYKEAVAQGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +   +M ++          +VLL     GY+ L+++V+   L +      R
Sbjct: 65   IGCEIYVAPR---RMQDREYGIDDENYHLVLLAKDMTGYKNLMKIVTAASL-EGFYYKPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +   +L +  +EGLI L+   +G +         + A++  L +  +FG    Y+ LQ H
Sbjct: 121  VDKEFL-KNHSEGLIALSACLAGEVPSLILRGDYEKAKEVALFYDSIFGRGNFYLELQDH 179

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     ++V+++    +PLVATN+  +L ++D  AH+VL+ +     +  +DR   
Sbjct: 180  GILEQKKVNRELVRMSKETGIPLVATNDVHYLEKKDARAHEVLLCIQTGKTIEDEDRMLF 239

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM  +F+   EA+ENT +IA  C+   + +   LP++   E  D     
Sbjct: 240  PTDEFYLKSPEEMEELFACCKEAIENTEKIAEMCNIEFEFNKTKLPKYDLPEGVDSY--- 296

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LRN    GL              +Q+   RL++EL+VI +M +  YFLIV DFI++A
Sbjct: 297  -EYLRNLCYEGLYK-------RYKSPSQEVIDRLEYELSVIKQMGYVDYFLIVWDFIKFA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N I  GPGRGS AGS+ AY L IT++DP++++LLFERFLNP+R+SMPD D DFC +RR
Sbjct: 349  KDNGIMTGPGRGSAAGSLVAYTLGITNVDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG + VAQIITFG++ A+A +RDVGRAL  PY++VD + K+IP +    +
Sbjct: 409  QEVIDYVVRKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDEIAKMIPFELGMTI 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                +  +   +E    D  V +L++IS+ LEGL RHASTHAAG+VI   PL   VP+ +
Sbjct: 469  DRA-LELNPELKERYEKDERVKQLIDISKALEGLPRHASTHAAGVVISKEPLVNYVPLQK 527

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
            +   D  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ + +   + +DL  + +DD 
Sbjct: 528  N--DDSVVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGIIIDLDSLNYDDP 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y L++   T G+FQLES GMRQ +  ++P  +EDIIA +SLYRPGP+D I  Y   +N
Sbjct: 586  KVYELISKGETEGVFQLESPGMRQFMTELKPKNLEDIIAGISLYRPGPMDQIPKYLANRN 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              EKI   HP++ P+L+ T G ++YQEQVMQI + ++GYSL  AD++RRAM KK  + M+
Sbjct: 646  NPEKIEYEHPILKPILEVTYGSLVYQEQVMQIVRDVAGYSLGRADLVRRAMAKKKMDVME 705

Query: 727  KQKERFISG------------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI G            A +NG+ +  A  +F+ + +FA+Y FNKSHAAAYAVI+Y
Sbjct: 706  QERKNFIYGIVDEEGNVVVPGALRNGLDEETANRLFDQMLEFANYAFNKSHAAAYAVIAY 765

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K ++PVEF+AA +   +DN++KI  + Q  ++  I+++PP +N     F V  ++
Sbjct: 766  QTAYLKRYFPVEFMAALLNSFVDNLDKIAFYVQVCKKMGIKVLPPDINESDSYFTVVGDK 825

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L+A+K VG      I+    A   F S+ DF  R+   +LN++ +ESL+ AGA   
Sbjct: 826  IRFGLSAVKNVGINVTEEIVREREARGKFKSVIDFFERMQDSQLNKKAIESLIKAGAFAS 885

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
             G  R QLLQS D + +  +  + +      ++F   +                 +    
Sbjct: 886  LGVKRSQLLQSYDKLIESVKKAKSSAIEGQISLFEVSEEHKEIDFRFPDVEEYPKNRILS 945

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV----------ATIRGNNIRLAAMVVS 1003
             E+  LG Y SGHPL+ Y   + K+      +                   + +A ++V+
Sbjct: 946  MEKETLGLYISGHPLEEYLEDIPKITNVTTLDFKINPEDEMFTSKLEDNQEVTIAGVIVA 1005

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K+ K TR  + + +VT  +     E   FP
Sbjct: 1006 KKVKFTRNSNIMAFVTLEDMYGTVEVIVFP 1035


>gi|302037892|ref|YP_003798214.1| DNA polymerase III subunit alpha [Candidatus Nitrospira defluvii]
 gi|300605956|emb|CBK42289.1| DNA polymerase III, alpha subunit [Candidatus Nitrospira defluvii]
          Length = 1150

 Score =  851 bits (2199), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1036 (41%), Positives = 621/1036 (59%), Gaps = 22/1036 (2%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  FVHL +H+ YSLL+GA  ++ ++ ++ +  QPA+A+TD  N+F A+EF +KA  AG+
Sbjct: 2    ASQFVHLHLHTQYSLLDGANQIDPLMQQVKSFGQPAVAMTDHGNMFGAVEFYRKAKEAGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC+  +     L+              ++LL +  +GYQ LI+LVS+ YL +    
Sbjct: 62   KPIIGCEAYMAPGSRLEKN--SHLAHNDYYHLILLATNLKGYQNLIKLVSKAYL-EGFYY 118

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              R+    LQ+   EGLI L+G  SG +           A K    ++++FG D  Y+ L
Sbjct: 119  KPRMDKEILQQ-HHEGLIGLSGCLSGEVAYLIGQKDLAGATKAAGEYREIFGKDNYYLEL 177

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q +    +      ++++    ++PL  TN+  +L +ED   HD+++ +     ++  +R
Sbjct: 178  QANGLEHQRIANDGLLEIHKKLDIPLAGTNDCHYLKKEDSRPHDLMLCLQTGKTINDPNR 237

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             +  T   Y+K+  + +S F ++P A+ NTV+IA  C+  L ++   LP+F   E     
Sbjct: 238  MKFDTDQLYVKSTEQALSEFKEMPTAVSNTVKIAEACTLDLALNKTYLPQFKVPEG---- 293

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               E+ +   A+ GL  RL +   +    A  Y+ RL  E+ VI  M F+GYFLIV D I
Sbjct: 294  YTRESYVEQLALEGLAARLKERPSSIPEIA--YQVRLKEEVAVICSMGFAGYFLIVWDII 351

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+   IPVGPGRGS AGS+ AYAL ITD+DPL +SLLFERFLNP+R+S+PD D+DFC 
Sbjct: 352  KFARSRGIPVGPGRGSAAGSLVAYALRITDLDPLVYSLLFERFLNPERVSLPDIDMDFCM 411

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRRDEVI YV +KYG + VAQIITFG+++AKAA+RDVGR L+MPY++VDR+ KL+P+D  
Sbjct: 412  DRRDEVINYVIHKYGEDHVAQIITFGTMKAKAAIRDVGRVLEMPYAEVDRIAKLVPDDLK 471

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +    +  + R +E    D  V  L+ ++Q LEGL RHASTHAAGIVI D+PL++ VP
Sbjct: 472  MTLDKA-LEQEPRLKELVDKDVKVKELMSVAQSLEGLARHASTHAAGIVISDQPLTEHVP 530

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL---SLI 601
            +Y+  + +  VTQ++M  +EK GL+KFDFLGLKTLT++ ++   + +            +
Sbjct: 531  LYKGPKDE-IVTQYSMGDVEKIGLVKFDFLGLKTLTMIHRAETLVNEVHPDQPPLRVEQL 589

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            PFDD +T+ LL++  T G+FQLESSGMR  L G++PD  EDIIA+++LYRPGP+D I  +
Sbjct: 590  PFDDPDTFALLSSGKTTGVFQLESSGMRDLLMGLKPDRFEDIIAIIALYRPGPMDLIPDF 649

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK GK  I    P ++P+LK+T GVI+YQEQVM IA  ++G+SL +AD+LRRAMGKK 
Sbjct: 650  IKRKQGKIPIAYEMPELEPILKDTYGVIVYQEQVMAIANKVAGFSLGQADILRRAMGKKK 709

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             EEM+K + +F+ GA +  IS+  A  ++EL+ KFA YGFNKSHAAAYAV+ YQTA++K 
Sbjct: 710  PEEMEKLRVQFLEGAKQKKISEKKADKLYELIQKFAGYGFNKSHAAAYAVVCYQTAYLKA 769

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP EF+AA MT +M N +KI  +  + R   I ++PP VN    +F V D  I + LAA
Sbjct: 770  HYPTEFMAALMTTDMGNADKIVGYFTECRGLGIPVLPPDVNQSQKNFAVVDQSIRFGLAA 829

Query: 842  IKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK VG      I+E   +  PF S  D   RVD +KLN+R++E L+ AGA D  G  R Q
Sbjct: 830  IKNVGEGAVEAIIEVRNETGPFRSFFDLFRRVDLRKLNKRMMEGLIKAGAFDSMGGRRSQ 889

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRFENEQR 957
             L  LD        ++K R     +IF  +        D+  L      N     + E+ 
Sbjct: 890  YLAVLDQAMDEGMSIQKERALGQTSIFGDDTVGMPQQLDEPALPDVPEWNQGELLKYERE 949

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            + GFY S HPL  Y+  ++        +      G  ++L  ++ + +   T+KG R+ +
Sbjct: 950  LTGFYISAHPLARYEAAIQLFANTTTMQIPDVPDGREVKLCGIITAVKSMLTKKGDRMAY 1009

Query: 1018 VTFSEPAKEYEANFFP 1033
            +T  +     E   FP
Sbjct: 1010 ITLEDLHGLVEVIAFP 1025


>gi|302343800|ref|YP_003808329.1| DNA polymerase III, subunit alpha [Desulfarculus baarsii DSM 2075]
 gi|301640413|gb|ADK85735.1| DNA polymerase III, alpha subunit [Desulfarculus baarsii DSM 2075]
          Length = 1152

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1033 (40%), Positives = 633/1033 (61%), Gaps = 17/1033 (1%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +PSFVHL  H++YSLL+GA+ L  ++ + A     A+A+TD  N+F AL F Q+A  AG+
Sbjct: 2    TPSFVHLHTHTAYSLLDGAIRLPELIKRTAELGMNAVAVTDHGNMFGALNFFQQAKKAGL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC++ +   D     +  +    T   +VLL    EGYQ L+ LVS  +  +    
Sbjct: 62   KPIIGCEVYVAPGDRRDKEH--RPGHETAFHLVLLCKNLEGYQNLVRLVSAGFT-EGFYY 118

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNL 186
              RI +  L++    GLI L+    G +       +   A        +  G+   ++ L
Sbjct: 119  KPRIDMELLRQ-HNGGLIALSACLGGRVPHYLLRGNIDQALAAAEDMAQTMGEGNFFIEL 177

Query: 187  QRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   ++      + ++A    L LV TN+  FL  +D+EAHD+L+ +     ++  +R
Sbjct: 178  QDHGLVEQKQVNPGLREIAQRLGLGLVVTNDCHFLRRQDHEAHDILLCIQTGKTIADAER 237

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              ++P+ Y K+  EM  +F D PEA+ NT++IA RC   + +     P++   E     +
Sbjct: 238  MTMSPELYFKSPEEMALLFPDCPEAMANTMDIAARCDLDIPLGQLRFPQYPLPEG----Q 293

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              E++L   A  GLE RLA+            Y++RL++E++V+ +M F+GYFL+V+DFI
Sbjct: 294  SAEDQLTRMARRGLERRLAEMDARGLKFDRDFYKKRLEYEIDVLLQMGFAGYFLVVSDFI 353

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAK   IPVGPGRGS AGS+ AY++ ITD+DP+R+ L+FERFLN +R SMPD D+DFC 
Sbjct: 354  VWAKSQGIPVGPGRGSAAGSLVAYSMRITDLDPIRYGLIFERFLNIERKSMPDIDVDFCY 413

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI+YV  +YG + VAQIITFGS+ A+A +RDVGRA+ +P+  VD++ KL+P    
Sbjct: 414  NRRPEVIQYVTERYGSDHVAQIITFGSMLARAVIRDVGRAMNVPFGDVDQIAKLVPTALG 473

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +    +  + R  +    +P V +L+ I++ LEGL RHASTHAAG+VIGD PL ++VP
Sbjct: 474  MTLDKA-LEQEPRLAQRIKDEPQVAKLVRIAKSLEGLPRHASTHAAGVVIGDVPLDRVVP 532

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +YR  + +  VTQF+MK +EKAGLIKFDFLGL+TLT++  ++  + Q R    D+  I  
Sbjct: 533  LYRGSQGEC-VTQFDMKCVEKAGLIKFDFLGLRTLTVIDVAVKMIRQGRDPSFDIDAIDM 591

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661
            DD  +Y LL+   T G+FQLESSGM++ L  M+P+  ED+IALV+LYRPGP+++ +   +
Sbjct: 592  DDKASYELLSRGDTTGVFQLESSGMKELLTKMRPEVFEDVIALVALYRPGPLESGMVDDF 651

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K+G +K+    P ++P+LKET GVI+YQEQV +IA++L+GYSL E D+LRRAMGKK+
Sbjct: 652  VACKHGAKKVSYPLPQLEPVLKETYGVIVYQEQVQEIARILAGYSLGEGDILRRAMGKKV 711

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E M  Q+ERF+SGA  NG+S+  A  IF+L+ KFA YGFNKSH+AAY +I+YQTA++K 
Sbjct: 712  PEVMAAQRERFVSGAKANGVSEKKAGEIFDLMEKFAGYGFNKSHSAAYGLIAYQTAFLKA 771

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            H+P EF+AA +T E+ N +KI     + R  N++++PP +N    +F V D+ I + LAA
Sbjct: 772  HFPHEFMAALLTSEVSNTDKIMLHIAECRDQNLKVLPPDINHSGREFTVDDDAIRFGLAA 831

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            +K VG      I+EA  +KPF+ + DFC RV+  K+NRRV+ESL+  GA D  G  R Q 
Sbjct: 832  VKNVGEGAVDAIIEARQEKPFEDIFDFCERVNLAKVNRRVIESLIKCGAFDSLGAHRAQN 891

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENI-FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            + +LD+  +  Q + ++R     N+  A  +   S + T+        +     E+  LG
Sbjct: 892  MAALDDAMEQGQKLGRDRDGGQINMFAAFSEAAASARPTMPDVPPWLEADALTYEKEALG 951

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY +GHPL  +   ++++G+       A   G ++RLA +    ++K T+KG R+ +V  
Sbjct: 952  FYITGHPLGRFAEDIKRLGVLDSVTVQAAADGMSVRLAGLATEIKEKITKKGDRMAFVRL 1011

Query: 1021 SEPAKEYEANFFP 1033
             +     E   FP
Sbjct: 1012 EDLKGSLELVVFP 1024


>gi|313903425|ref|ZP_07836816.1| DNA polymerase III catalytic subunit, DnaE type [Thermaerobacter
            subterraneus DSM 13965]
 gi|313466246|gb|EFR61769.1| DNA polymerase III catalytic subunit, DnaE type [Thermaerobacter
            subterraneus DSM 13965]
          Length = 1218

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1111 (35%), Positives = 584/1111 (52%), Gaps = 106/1111 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+GA  +  +  + A    PA+A+TD   ++ A++F +     GI+PI
Sbjct: 4    FVHLHVHSEYSLLDGAARVGELAARAAELGMPALALTDHGVMYGAIDFYKACKKHGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC+L +  +       +          ++ L     GY+ LI +VSR Y  +      R
Sbjct: 64   IGCELYLARRTRHDREPK---LDDQPYHLLALAQNETGYRNLIRIVSRAY-AEGFYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                 L +  +EGLI+ +G     I R       + A + +  + ++FGDR Y  +Q H 
Sbjct: 120  ADRELLAQY-SEGLIVTSGCIGSEIPRLLLEGREEEALQAVRWYLEVFGDRFYFEIQDHG 178

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              +  R  +++++LA   ++P+VATN+  +L+++D  AH+VL+ +     +   +R R  
Sbjct: 179  LPEERRAYARILELARRFDVPVVATNDVHYLNKDDAAAHEVLLCIQTGKTLDDPNRMRFE 238

Query: 250  -PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             P+ YLK   EM ++F D+PEAL NTV++A RC    +    +LP +   E  D      
Sbjct: 239  GPEFYLKTPEEMAALFRDVPEALANTVKLAERCQLEFEFGRFLLPHYEVPEGHD----AA 294

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR    + L  R             + R RL+ EL VI RM +  YFLIV DF+ +A+
Sbjct: 295  SYLRYLCESKLPERYPNAGS-------EVRDRLNHELEVITRMGYPAYFLIVWDFVDYAR 347

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N I VGPGRGS AGS+ AY L ITDIDPLR++LLFERFLNP+R++MPD DIDF   RRD
Sbjct: 348  RNGIAVGPGRGSAAGSLVAYVLGITDIDPLRYNLLFERFLNPERVTMPDIDIDFDDHRRD 407

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV  KYG +RVAQIITFG + A+A +RDVGR + +PY +VD++ K++P      + 
Sbjct: 408  EVIEYVVRKYGRDRVAQIITFGRMLARAVIRDVGRVMGLPYGEVDKIAKMVPAQLGITLD 467

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             QA+      ++A    P V +L+++++KLEG+ RHAS HAAG+VIG  PL + VP+ R 
Sbjct: 468  -QALESSPELKQAYDQQPVVRQLVDMARKLEGMPRHASVHAAGVVIGRDPLMEHVPLQR- 525

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
            ++    VTQF M  +E+ GL+K DFLGL+TL ++Q++   + Q G +  L+  P      
Sbjct: 526  MQDGSTVTQFPMTTLEELGLLKMDFLGLRTLHVIQETEQIIHQTGARDVLAEEPGPAGPG 585

Query: 609  YHL--------------------------------------------LTTKGTLGIFQLE 624
                                                                    F+  
Sbjct: 586  GAGGPAGAGGAGGASGEVGKDGPRGAGGAGGGPGGDGTAARRPFRVRDIPLDDAATFEAM 645

Query: 625  SSGMRQALEGMQPDCI------------EDIIALVSLYRPGPIDNIV--VYNNRKNGKEK 670
            S G   A+  ++                ED+IA V+L+RPGP+ + +   +  RK+G+  
Sbjct: 646  SRGETAAMFQVESSGFTQMLRSLKPSSIEDLIAAVALFRPGPLGSGMVDDFIKRKHGQVP 705

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +   HP ++P+LKET G I+YQEQVMQIA +++G++L EAD+LRRAMGKK  EEM KQ+E
Sbjct: 706  VEYPHPWLEPILKETYGTIVYQEQVMQIASVMAGFTLGEADLLRRAMGKKKPEEMQKQRE 765

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            +F++GA+  GI   +A  IF+L+  FA YGFNKSH+AAY  ++Y TA++KTHYP  ++AA
Sbjct: 766  KFLAGAAAKGIDAELAGRIFDLMEYFAGYGFNKSHSAAYGYLAYVTAYLKTHYPAPYMAA 825

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-------GDNRIYYSLAAIK 843
            +++  M N +++ ++  + R+  I ++PP VN     F V       G   I + LAA+K
Sbjct: 826  TLSSVMSNSDRVAEYIAECRRLGIPVLPPDVNQSEARFTVVPDPGAPGGQAIRFGLAAVK 885

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      I+ A     PF SL+DFC RVD +++NRR LESL+ AGA D  G  R +L+
Sbjct: 886  NVGFGAIESIVAARQEGGPFRSLDDFCRRVDLRQVNRRALESLIKAGAFDSLGEPRARLV 945

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--------------------DKITLEK 942
              L+ +   AQ   K R     ++                             +   L  
Sbjct: 946  AGLEEVMNRAQRWHKERETGQVSLLDLTAALVGAGGRGSGGGGTGAGAAAADLEVTELPP 1005

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                  + +   E+ VLG Y SGHPL  Y+  L +       +      G  +++  +V 
Sbjct: 1006 VDEWPPNRKLAMEKEVLGLYLSGHPLAHYQRELARRVTATTRQLADREDGARVQVGGLVQ 1065

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              ++  TR G  + +V   +     E   FP
Sbjct: 1066 GVRRITTRGGDFMAFVQLEDLEGTVEVVVFP 1096


>gi|260892340|ref|YP_003238437.1| DNA polymerase III, alpha subunit [Ammonifex degensii KC4]
 gi|260864481|gb|ACX51587.1| DNA polymerase III, alpha subunit [Ammonifex degensii KC4]
          Length = 1139

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1035 (39%), Positives = 596/1035 (57%), Gaps = 28/1035 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +H+ YSLL+GA  + +++ +     Q A+AITD   ++  ++F +     GI+P
Sbjct: 2    DFVHLHLHTEYSLLDGAARIKDVVKRAKELGQNALAITDHGVMYGVVDFYKACQEVGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +  +     T +          +VLL    EGY+ LIELVSR +L +      
Sbjct: 62   ILGCEVYVAPRGMTDRTPK---VDDNPYHLVLLAENEEGYRNLIELVSRAFL-EGFYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L +   +GLI L+   +G +         + AE+    ++ +FG D  ++ LQ 
Sbjct: 118  RVDKYLLAQK-AKGLIALSACLAGEVAAHLLAGDFKKAEEAAGEYRDIFGKDNFFLELQD 176

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++      +++LA   ++PLVATN+  ++   D E  D+L+ +     V   DR R
Sbjct: 177  HGLPEQKPVNEGLIKLASRLDIPLVATNDVHYVERADAEVQDLLLCIQTGKSVGDPDRLR 236

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   YLK+  EM  +F D P+AL  TVEIA RC   L      LP F   E       
Sbjct: 237  FGSDQFYLKSALEMARLFPDHPDALRATVEIASRCEVKLSFGEYHLPEFPVPEG----HT 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR    AG + R             +  +RL +EL VI RM +  YFLIV D I +
Sbjct: 293  PASYLRELCYAGAKKRYGDPL------PPEVEERLAYELQVIERMGYPPYFLIVWDVIHF 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++N I VGPGRGS AGS+ AY L IT+IDPL++ LLFERFLNP+R+S+PD D DFC + 
Sbjct: 347  ARRNGIMVGPGRGSAAGSLVAYCLGITNIDPLKYGLLFERFLNPERVSLPDIDTDFCFEM 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD+V+ YV  +YG +RVAQI TF  L A+AA+RD GRAL M Y++VDR+ +L+P +P   
Sbjct: 407  RDKVLEYVVRRYGADRVAQIATFAQLSARAAIRDAGRALGMSYAEVDRVARLVPGEPGMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            V  +A+ +    +E    + SV +LL+++ KLEG+ RHASTHAAG+VI   PL +LVP++
Sbjct: 467  V-ARALEESPELKELYEKEASVKKLLDVAAKLEGIPRHASTHAAGVVITPEPLIRLVPLH 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            R +      TQF  + +E+ GL+K D LGL+TLT+++ +L  + +RGVK+DL  IP DD 
Sbjct: 526  R-MPDGTVATQFTKEGVEELGLLKMDLLGLRTLTVIRDTLRHVNRRGVKLDLEKIPLDDP 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664
             T+ LL    T+G+FQLESSGMR  L  +QP C ED+IALV+LYRPGP+ + +   +  R
Sbjct: 585  ATFELLCRGDTIGVFQLESSGMRALLRSLQPSCFEDLIALVALYRPGPLGSGMVDDFIKR 644

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G   I   HP ++P+L+ET GVI+YQEQVMQIA  L+G+SL EAD+LRRAMGKK  EE
Sbjct: 645  KHGLLPIEYPHPWLEPILRETYGVIVYQEQVMQIASRLAGFSLGEADLLRRAMGKKKPEE 704

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +   + RF+ G+ + G+ + +A  IF+ +  FA YGFNKSH+AAYA+++YQTA++K +YP
Sbjct: 705  LAALRSRFVKGSVERGVDERLAEEIFDRMEYFAGYGFNKSHSAAYALVAYQTAYLKANYP 764

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843
            VE++AA +T   D  EK+  + ++ R+  I+I PP +N    DF    D  I + LAA+K
Sbjct: 765  VEYMAALLTSVRDRTEKVALYVEECRRLGIKIFPPDINESERDFSPTPDGGIRFGLAAVK 824

Query: 844  GVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      I+       PF    DFC+RV  + LNR+VLESL  AGA    G++R ++L
Sbjct: 825  NVGEGAVEAILQARREGGPFRDFADFCARVGGRALNRKVLESLAKAGAFASLGHTRKEIL 884

Query: 903  QSLDNIQKYAQWVEKNRTNK-HENIF---AHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
            +S+D   K A   +  +       +F       G +  K                 E+ +
Sbjct: 885  ESIDEGLKIANRAKAKKQQGIQICLFQNMEDFGGGYRLKFNRPNGEEFPRRELLRMEKEL 944

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG Y SGHPL  Y+ +LR +      +         +++  M+V  ++ +TR+G  +  V
Sbjct: 945  LGLYISGHPLAEYRDLLRLLTDVQVADLAEMEEDAEVKVGGMIVGMKRLRTRRGEPMAAV 1004

Query: 1019 TFSEPAKEYEANFFP 1033
               +     EA  FP
Sbjct: 1005 YLEDLTGVVEAVLFP 1019


>gi|51891797|ref|YP_074488.1| DNA polymerase III DnaE [Symbiobacterium thermophilum IAM 14863]
 gi|51855486|dbj|BAD39644.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
            14863]
          Length = 1252

 Score =  849 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1036 (37%), Positives = 574/1036 (55%), Gaps = 35/1036 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL +H+ YSLL+GA  +  +  + A     A+A+TD   LF  L F +     G++
Sbjct: 29   PEFVHLHLHTEYSLLDGANRIEPLARRAAELGMRAMAMTDHGVLFGVLPFYKAMRNHGVK 88

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC+L +            K+       + +L     GY+ L++LVS  Y  +     
Sbjct: 89   PIIGCELYVAPGSR-----HVKSGGEKPYHLTVLAENYTGYKNLVKLVSAGYT-EGFYYK 142

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
             R+ L  L     EGLI+L+G  +G + + F     + A + +  ++++FG D  ++ LQ
Sbjct: 143  PRVDLELLNTY-REGLIVLSGCLAGEVAQKFLAGQPEEARRAIGRYREIFGPDHYFLELQ 201

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                 ++   ++ +       LP+VATN++ +L  +D    DVL+ +  +  +   +R R
Sbjct: 202  DLGLPEQQGLNRFL---LEQGLPVVATNDAHYLRPQDARTQDVLICIGTNKTIDDPNRMR 258

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + T + Y+K+  EM   F  +P ALEN++ IA RC+  L +    LP +      D    
Sbjct: 259  MGTSELYVKSAEEMYWRFGHVPGALENSLAIAERCNVELPLGQIHLPHYALPPGYD---- 314

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR      +      G    G   +   +RL+ ELNVI  M F+GYFLIV DF+++
Sbjct: 315  APGYLRKLCYERI------GPRYGGRPPEGAMERLEHELNVIISMGFAGYFLIVWDFVEF 368

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   IPVGPGRGSGA S+ AY L ITD+DPLR+ LLFERFLNP+R+ MPDFDIDFC +R
Sbjct: 369  ARSRGIPVGPGRGSGASSLVAYVLGITDVDPLRYGLLFERFLNPERVDMPDFDIDFCYER 428

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV NKYG E VAQ+ITF ++ A+AA+RDVGRAL M Y +VDR+ KL+P   +  
Sbjct: 429  RGEVIEYVHNKYGAECVAQVITFNTMAARAAVRDVGRALGMSYGEVDRVAKLLPWGQS-- 486

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                A+      R        +  L++ ++ +EG+ R+ S HAAG+VI   PL + VP+Y
Sbjct: 487  -LDAALEKTEELRTLYEEREEIRTLIDTARAVEGMPRNPSVHAAGVVITADPLVEHVPLY 545

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            + +  D  VTQF+M  +++ GL+K DFLGL+TLT++  ++ F+ Q     D+  IP DD 
Sbjct: 546  K-MGDDSIVTQFDMDQLKEIGLLKMDFLGLRTLTVIDHAVKFVRQYQPDFDIERIPMDDP 604

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            ETY ++    TLG+FQ+E+  +   L  M+P   EDIIA +SL RPGP+++I  Y   K 
Sbjct: 605  ETYAMIARGETLGLFQIEAGWVADVLRQMKPTRFEDIIATISLCRPGPMEHIPDYIAGKQ 664

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                +  +HP ++P+L ET GV++YQEQ++QIA LL+G SL +AD+LRRA+ KK +E+M+
Sbjct: 665  NPAGVKYLHPDLEPILSETYGVMVYQEQIIQIAHLLAGLSLGQADLLRRAIAKKKREDME 724

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K    F+    + G S  +A  +++ + +FA+YGFNK HA  YA ++YQTA++K H+PV 
Sbjct: 725  KYGRLFMEALEQRGYSHEVATALYDQMIRFANYGFNKCHATPYAKVAYQTAYLKRHHPVA 784

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+AA M   M    K+  + ++ R+  IQ++PP VNT    F      I + L A+K +G
Sbjct: 785  FMAALMNSVMGQEAKLALYIEECRRLGIQVLPPDVNTSFARFVPDGRTIRFGLGAVKNIG 844

Query: 847  TTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY------SRM 899
                  I+ A  +  PF SL D C RVD + LNRR LESL+ AGA D           R 
Sbjct: 845  WNAVDAIVAAREEGGPFTSLRDLCERVDLRPLNRRALESLIMAGAFDRVAPPGGRPARRS 904

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            Q+L++LD I   AQ ++++R     ++F         + +  L              E+ 
Sbjct: 905  QMLEALDKILDDAQKLQRHRQAGQISLFDLGVAGPGTAGEEPLPDIPEFPPQRLLAMEKE 964

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            VLGFY SGHPL  Y+  L   G            G  + +  MV   +Q  TR G+ + +
Sbjct: 965  VLGFYVSGHPLRQYQAALAAHGCLPVAALPEQRDGARVAVGGMVAGLKQVTTRSGANMAF 1024

Query: 1018 VTFSEPAKEYEANFFP 1033
            +T  +   + E   FP
Sbjct: 1025 LTLEDQTGQVEVVVFP 1040


>gi|217967773|ref|YP_002353279.1| DNA polymerase III, alpha subunit [Dictyoglomus turgidum DSM 6724]
 gi|217336872|gb|ACK42665.1| DNA polymerase III, alpha subunit [Dictyoglomus turgidum DSM 6724]
          Length = 1127

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/1026 (39%), Positives = 630/1026 (61%), Gaps = 27/1026 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YSLL+GA  ++ ++D+  A   PA+AITD   ++  ++F +KA   GI+P
Sbjct: 2    SFVHLHVHTEYSLLDGACRIDELIDQAVAFNMPAVAITDHGVMYGVVDFYKKAIEKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +          +       +  ++LL    EGY+ LI+LVS  +L +      
Sbjct: 62   IIGCEVYVAPASRFDKKQRTD-----LFHLILLAKDFEGYKNLIKLVSLSFL-EGFYYKP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L++  ++GL+ L+   +G I      N+ + A+  +  +  +FG+  Y+ LQ +
Sbjct: 116  RVDKDLLRQY-SKGLVALSSCLAGEIPTYILQNNIERAKNAIKEYLDIFGEDFYLELQNN 174

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++    + +++LA    +PLVATN+  +L +ED E HD+L+ +   + ++ KDR R 
Sbjct: 175  GMEEQEYVNNYLIRLAKEFNVPLVATNDVHYLRKEDAEIHDILLCIQTGSKLNDKDRLRF 234

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + Y K+  EM+++F D+PEA+ENT +IA RC+  + ++  ILP F   E +      
Sbjct: 235  KTNEFYFKSPDEMINLFKDVPEAIENTFKIAERCNVEIPLNNIILPVFEVPEGE----TL 290

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++        G + R  +         Q+ ++RL +E++VI +M FSGYFLIV DF+ +A
Sbjct: 291  DSYFEKLCWEGAKKRFGEN------IPQEIKERLSYEISVIKQMGFSGYFLIVQDFVNYA 344

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K   IPVGPGRGS AGS+ +Y L IT+I+P R+ L+FERFLNP+R++MPD DIDFC +RR
Sbjct: 345  KSKGIPVGPGRGSAAGSLVSYVLGITNIEPTRWGLIFERFLNPERVTMPDIDIDFCFERR 404

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI YV+NKYG E VAQIITFG++ A+A++RDVGR L +PY++VDR+ KLI   P +  
Sbjct: 405  EEVIEYVRNKYGREHVAQIITFGTMAARASVRDVGRVLDVPYNEVDRIAKLI---PPNTS 461

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A++     R    ++P   R++EI++++EG  RHAS HAAGIVI   PL + VP+  
Sbjct: 462  IEEALSTSEELRNLVESNPQAKRIIEIAKRIEGNARHASIHAAGIVISKDPLMEYVPLQ- 520

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
             +  +  VTQF M  +E+ GL+K DFLGL+TLT++  ++  + +   +++D+S I   D 
Sbjct: 521  VMNGNDVVTQFPMTNLEELGLLKMDFLGLRTLTVIYDTVKKIKENYGIEIDISNISLTDE 580

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y LL    T+G+FQLES GMR  L  ++P+  ED+IA+++LYRPGP+  +  Y  RK 
Sbjct: 581  KVYELLQKGDTIGVFQLESRGMRNLLRDIKPEKFEDLIAVLALYRPGPLGRLESYIKRKR 640

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+EK+  +HP ++P+L ET GVIIYQEQVM+IA  L+G++L +ADVLRRAMGKK  E M+
Sbjct: 641  GEEKVEYMHPALEPILSETYGVIIYQEQVMEIAHKLAGFTLGQADVLRRAMGKKKPEVME 700

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +Q+  F+ GA + GI + +AV IFE +AKFA+YGFNKSH+AAYA +S+QTA++K +YP E
Sbjct: 701  EQRGIFVKGAVERGIPEEVAVEIFEDMAKFAEYGFNKSHSAAYAFVSFQTAYLKVYYPKE 760

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            ++A+ +T   +N  K+ K+  +A++  I+I+PP +N   VDF V    I + L+AIK VG
Sbjct: 761  YMASLLTSVKNNTTKLSKYIAEAKRIGIKILPPDINESMVDFTVTPQGIRFGLSAIKNVG 820

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  I+E      F S+ DF  R+ SK +N+R LESL+ +GA D FGYSR  LL ++D
Sbjct: 821  ENVAEAIVEEREKGKFKSIFDFIKRLSSKVINKRTLESLIKSGAFDSFGYSRRALLANID 880

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             I + AQ ++K       ++   E     + I        +     + E+ +LGFY S  
Sbjct: 881  KILESAQVIKKAHV-GQVSLIDLEALPQDEFIN--NMPEFSIDEILDMEKEMLGFYVSYD 937

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P +  + +  K+     ++ +    G+ + +  ++ + ++   RK  ++ + T  +   E
Sbjct: 938  PQEELRKLSEKLFDYTIDDLLEIESGSQVVVPGILKNVREVIDRKNQKMLFATLEDFTGE 997

Query: 1027 YEANFF 1032
             E   F
Sbjct: 998  AEITVF 1003


>gi|325295328|ref|YP_004281842.1| DNA polymerase III, alpha subunit [Desulfurobacterium
            thermolithotrophum DSM 11699]
 gi|325065776|gb|ADY73783.1| DNA polymerase III, alpha subunit [Desulfurobacterium
            thermolithotrophum DSM 11699]
          Length = 1147

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1035 (39%), Positives = 615/1035 (59%), Gaps = 19/1035 (1%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL +HS YSLL+GA+ + +++ K       A+A+TD  N++++ E  ++  A
Sbjct: 1    MANKGDFVHLHLHSQYSLLDGAIKIKDLVKKAKEYGMSAVAVTDHGNMYASYELYKECTA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I          +G         +VLL     G + L++L S  +L + 
Sbjct: 61   EGIKPIIGQEFYIAKGSRFDR-KKGNEGEKGSYHLVLLAKNEIGLKNLMKLSSIAFL-EG 118

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI L+    G I   +     + A+     +K+LFGD  Y+
Sbjct: 119  FYYKPRIDKEVLEKY-SEGLIALSACIQGEIPVLYLQGKEEEAKNVAKWYKELFGDDFYL 177

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +Q H   ++ +    +++L+   ++ LVATN++ +L +ED+EAHDVL+ +     +S +
Sbjct: 178  EIQYHGIKEQEKANQFLIKLSKELDIDLVATNDAHYLEKEDWEAHDVLLCLQTGKKLSDE 237

Query: 244  DRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +R R +  + Y K+ +EM+ +F ++P A+ NT+++A +    ++    +LP++       
Sbjct: 238  NRLRFSTKEFYFKDANEMLELFKEVPHAVFNTLKVAEKIDVKIKNTGYLLPKYDVP---- 293

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                 E+ LR  A  GLE R  +  I  G   Q Y QRL  EL +I+ M F GYFLIV D
Sbjct: 294  PDYTYESYLRELAEKGLERRFKELGITNGEIKQKYYQRLQHELKIISDMGFPGYFLIVWD 353

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAKKN IPVGPGRGS AGS+ AYA+ ITDIDPLRF+LLFERFLNP+R++MPD D+D 
Sbjct: 354  FINWAKKNGIPVGPGRGSAAGSLVAYAIGITDIDPLRFNLLFERFLNPERVTMPDIDVDI 413

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ+ RD VI+YV++KYG ++V QIITFG+++ K  +RDVGR L +P  +VD+  KLIPND
Sbjct: 414  CQEGRDRVIQYVRDKYGEDKVCQIITFGTMKTKMVVRDVGRVLGIPPKEVDKFAKLIPND 473

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                    AI      +E    + ++ +LL+I+ KL+GL R    HAAG+VI    L++ 
Sbjct: 474  AKS--IEDAIDRAPEIKELAQENETISKLLKIASKLQGLARQTGVHAAGVVIAPDTLTKY 531

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLI 601
            +P+ +  +     TQ++M  IE  GL+K DFLGLKTLT++ K++  + +R  +++D   I
Sbjct: 532  IPLAK-SKDGDITTQYDMGQIESLGLLKMDFLGLKTLTIIDKTIKLIKERHGIEIDTRKI 590

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV-- 659
            P DD +T+ LL    T+G+FQLES GMR  +  ++P   EDIIALV+LYRPGP+++ +  
Sbjct: 591  PLDDEKTFKLLQEGNTVGVFQLESQGMRNLMRRLKPSVFEDIIALVALYRPGPLNSGMAE 650

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  RK+G E +  I P ++P LKET G+ IYQEQ+MQIA +L+GYSL EAD+LRRAMGK
Sbjct: 651  SYIRRKHGLEPVDYIFPELEPYLKETYGLFIYQEQIMQIANVLAGYSLGEADILRRAMGK 710

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+ M++Q+  FI+ A + G  +     +F+ +AKFA+YGFNKSH+AAY  ++Y TA++
Sbjct: 711  KKKDVMEEQRNIFITRAVERGYPREKVEKLFDDIAKFAEYGFNKSHSAAYGFLAYVTAYL 770

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYP E +   ++++ D  ++I K  +D R+  I + PP VN     F +    I + L
Sbjct: 771  KAHYPKELMTTMLSIDYDKTDEIVKLIKDCRENGIPVFPPDVNKSDALFSIEGKGIRFGL 830

Query: 840  AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            A IKGVG   A+HI++    +  F  L DFC RVD K++N++V+ESL+ AGA D  G SR
Sbjct: 831  AGIKGVGEKAAQHIVKIRKENGEFKDLYDFCERVDLKQVNKKVIESLIKAGAFDSTGISR 890

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
               L+ LDN    AQ ++K ++    N+F +E    + +    K       ++ E E++ 
Sbjct: 891  AANLEVLDNAMSVAQSLQKTKSKGLMNLFDNETKIVNKE--FPKVREWPDRIKLEYERQA 948

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +GFY SGHPL  YK I++        E  +   G  ++LA  +     K+T++G     V
Sbjct: 949  IGFYLSGHPLLEYKDIVQ-FSFDLTSEKDSWKDGQEVKLAGAITEVTTKRTQRGDLWATV 1007

Query: 1019 TFSEPAKEYEANFFP 1033
              S+         FP
Sbjct: 1008 EISDLEGTVSILVFP 1022


>gi|307265890|ref|ZP_07547439.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii
            Rt8.B1]
 gi|306919059|gb|EFN49284.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii
            Rt8.B1]
          Length = 1145

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1049 (36%), Positives = 603/1049 (57%), Gaps = 45/1049 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+G+  + +++ K       AIAITD   ++ A++F ++A A GI+PI
Sbjct: 2    FVHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGAIDFYKEAVAQGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +    M ++          +VLL     GY+ L+++V+   + +      R
Sbjct: 62   IGCEIYVAPRS---MQDREYGIDNENYHLVLLAKDMTGYKNLMKIVTVASI-EGFYYKPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +   +L+E  +EGLI L+   +G +         + A++  L +  +FG    Y+ LQ H
Sbjct: 118  VDREFLKE-HSEGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLELQDH 176

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
               ++     ++++L+    +PLVATN+  +L ++D +AH+VL+ +     +  +DR   
Sbjct: 177  GILEQQKVNKELIRLSKETGIPLVATNDVHYLEKKDAKAHEVLLCIQTGKTIDDEDRMSF 236

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM ++FS   EA+ENT +IA  C+   + +   LP++   E  D     
Sbjct: 237  PTDEFYLKSPEEMENLFSCCKEAIENTEKIADMCNVEFEFNKTKLPKYDLPEGVDSY--- 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LRN    GL  R           +++  +RLD+EL+VI +M +  YFLIV DFI++A
Sbjct: 294  -EYLRNLCYEGLYKRYKN-------PSKEVIERLDYELSVIKQMGYVDYFLIVWDFIKFA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N I  GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC +RR
Sbjct: 346  KDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG + VAQIITFG++ A+A +RDVGRAL  PY++VD + K+IP +    +
Sbjct: 406  QEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDTIAKMIPFELGMTI 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                ++ +   +     +  V +L++IS+ LEGL RHASTHAAG+VI   PL   VP+ +
Sbjct: 466  DKA-LSLNPELKARYENEEKVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYVPLQK 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
            +   D  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ + +   V +D   + +DD 
Sbjct: 525  N--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGVIIDFDSMEYDDP 582

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y L++   T G+FQLES GM+Q +  ++P  +EDIIA +SLYRPGP+D I  Y   +N
Sbjct: 583  KVYELISKGETEGVFQLESPGMKQFMTELKPKNLEDIIAGISLYRPGPMDQIPRYLANRN 642

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E IV  HPL+ P+L  T G ++YQEQVMQI + ++GYSL  +D++RRAM KK  + M+
Sbjct: 643  HPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRSDLVRRAMAKKKMDVME 702

Query: 727  KQKERFISG------------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI G            A +NG+ +  A  +F+ +  FA+Y FNKSHAAAYAVI+Y
Sbjct: 703  QERKNFIYGIVDEEGNVIVPGALRNGLDEATANKLFDEMLDFANYAFNKSHAAAYAVIAY 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YPVEF+AA +   +DN++KI  + Q  ++  I+++PP +N     F V +++
Sbjct: 763  QTAYLKRYYPVEFMAALLNSFVDNLDKIAFYVQVCKKMGIKVLPPDINESDSYFTVVEDK 822

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L+A+K VG      I+     +  F S+ DF  R+   +LN++ +ESL+ AGA   
Sbjct: 823  IRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAGAFSS 882

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            FG  R QLL   D + +  +    N  N   ++F   + +   +           +    
Sbjct: 883  FGVRRSQLLSVYDKLMENIKKNRNNNLNGQISLFGEVEQSHGVEFEFPDLEEFPKNRLLS 942

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---------ATIRGNNIRLAAMVVSK 1004
             E+  LG Y SGHPL+ Y   + K+      +                  + +A ++ +K
Sbjct: 943  MEKETLGLYISGHPLEEYMEDIPKITNATTLDFKVSEEEMFQPKLQDNQEVVIAGVIATK 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + K T+  + + +VT  +     E   FP
Sbjct: 1003 KIKFTKNNNMMAFVTIEDLYGTVEVIVFP 1031


>gi|326390936|ref|ZP_08212486.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus JW
            200]
 gi|325992978|gb|EGD51420.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus JW
            200]
          Length = 1145

 Score =  844 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1049 (36%), Positives = 602/1049 (57%), Gaps = 45/1049 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+G+  + +++ K       AIAITD   ++  ++F ++A A GI+PI
Sbjct: 2    FVHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAQGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +    M ++          +VLL     GY+ L+++V+   + +      R
Sbjct: 62   IGCEIYVAPRS---MQDREYGIDNENYHLVLLAKDMTGYKNLMKIVTVASI-EGFYYKPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +   +L+E  +EGLI L+   +G +         + A++  L +  +FG    Y+ LQ H
Sbjct: 118  VDREFLKE-HSEGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLELQDH 176

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
               ++     ++++L+    +PLVATN+  +L ++D +AH+VL+ +     +  +DR   
Sbjct: 177  GILEQQKVNKELIRLSKETGIPLVATNDVHYLEKKDAKAHEVLLCIQTGKTIDDEDRMSF 236

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM ++FS   EA+ENT +IA  C+   + +   LP++   E  D     
Sbjct: 237  PTDEFYLKSPEEMENLFSCCKEAIENTEKIADMCNVEFEFNKTKLPKYDLPEGVDSY--- 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LRN    GL  R            ++  +RLD+EL+VI +M +  YFLIV DFI++A
Sbjct: 294  -EYLRNLCYEGLYKRYKNPG-------KEVIERLDYELSVIKQMGYVDYFLIVWDFIKFA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N I  GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC +RR
Sbjct: 346  KDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG + VAQIITFG++ A+A +RDVGRAL  PY++VD + K+IP +    +
Sbjct: 406  QEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDTIAKMIPFELGMTI 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                ++ +   +     +  V +L++IS+ LEGL RHASTHAAG+VI   PL   VP+ +
Sbjct: 466  DKA-LSLNPELKARYENEEKVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYVPLQK 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
            +   D  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ + +   V +D   + +DD 
Sbjct: 525  N--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGVIIDFDSMEYDDL 582

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y L++   T G+FQLESSGM+Q +  ++P  +EDIIA +SLYRPGP+D I  Y   +N
Sbjct: 583  KVYELISKGETEGVFQLESSGMKQFMAELKPKNLEDIIAGISLYRPGPMDQIPRYLANRN 642

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E IV  HPL+ P+L  T G ++YQEQVMQI + ++GYSL  +D++RRAM KK  + M+
Sbjct: 643  HPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRSDLVRRAMAKKKMDVME 702

Query: 727  KQKERFISG------------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI G            A +NG+ +  A  +F+ +  FA+Y FNKSHAAAYAVI+Y
Sbjct: 703  QERKNFIYGIVDEEGNVIVPGALRNGLDEATANKLFDEMLDFANYAFNKSHAAAYAVIAY 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YPVEF+AA +   +DN++KI  + Q  ++  I+++PP +N     F V +++
Sbjct: 763  QTAYLKRYYPVEFMAALLNSFVDNLDKIAFYVQVCKKMGIKVLPPDINESDSYFTVVEDK 822

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L+A+K VG      I+     +  F S+ DF  R+   +LN++ +ESL+ AGA   
Sbjct: 823  IRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAGAFSS 882

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            FG  R QLL   D + +  +    N  N   ++F   + +   +           +    
Sbjct: 883  FGVRRSQLLSVYDKLMENIKKNRNNNLNGQISLFGEVEQSHGVEFEFPDLEEFPKNRLLS 942

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---------ATIRGNNIRLAAMVVSK 1004
             E+  LG Y SGHPL+ Y   + K+      +                  + +A ++ +K
Sbjct: 943  MEKETLGLYISGHPLEEYMEDIPKITNATTLDFKVSEEEMFQPKLQDNQEVVIAGVIATK 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + K T+  + + +VT  +     E   FP
Sbjct: 1003 KIKFTKNNNMMAFVTIEDLYGTVEVIVFP 1031


>gi|167037102|ref|YP_001664680.1| DNA polymerase III DnaE [Thermoanaerobacter pseudethanolicus ATCC
            33223]
 gi|320115517|ref|YP_004185676.1| DNA polymerase III subunit alpha [Thermoanaerobacter brockii subsp.
            finnii Ako-1]
 gi|166855936|gb|ABY94344.1| DNA polymerase III, alpha subunit [Thermoanaerobacter
            pseudethanolicus ATCC 33223]
 gi|319928608|gb|ADV79293.1| DNA polymerase III, alpha subunit [Thermoanaerobacter brockii subsp.
            finnii Ako-1]
          Length = 1145

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1049 (36%), Positives = 601/1049 (57%), Gaps = 45/1049 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+G+  + +++ K       AIAITD   ++  ++F ++A A GI+PI
Sbjct: 2    FVHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAQGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +    M ++          +VLL     GY+ L+++V+   + +      R
Sbjct: 62   IGCEIYVAPRS---MQDREYGIDNENYHLVLLAKDMTGYKNLMKIVTVASI-EGFYYKPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +   +L+E  +EGLI L+   +G +         + A++  L +  +FG    Y+ LQ H
Sbjct: 118  VDREFLKE-HSEGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLELQDH 176

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
               ++     ++++L+    +PLVATN+  +L ++D +AH+VL+ +     +  +DR   
Sbjct: 177  GILEQQKVNKELIRLSKETGIPLVATNDVHYLEKKDAKAHEVLLCIQTGKTIDDEDRMSF 236

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM ++FS   EA+ENT +IA  C+   + +   LP++   E  D     
Sbjct: 237  PTDEFYLKSPEEMENLFSCCKEAIENTEKIADMCNVEFEFNKTKLPKYDLPEGVDSC--- 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LRN    GL  R            ++  +RLD+EL+VI +M +  YFLIV DFI++A
Sbjct: 294  -EYLRNLCYEGLYKRYKNPG-------KEVIERLDYELSVIKQMGYVDYFLIVWDFIKFA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N I  GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC +RR
Sbjct: 346  KDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG + VAQIITFG++ A+A +RDVGRAL  PY++VD + K+IP +    +
Sbjct: 406  QEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDTIAKMIPFELGMTI 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                ++ +   +     +  V +L++IS+ LEGL RHASTHAAG+VI   PL   VP+ +
Sbjct: 466  DKA-LSLNPELKARYENEEKVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYVPLQK 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
            +   D  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ + +   V +D   + +DD 
Sbjct: 525  N--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGVIIDFDSMGYDDL 582

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y L++   T G+FQLES GM+Q +  ++P  +EDIIA +SLYRPGP+D I  Y   +N
Sbjct: 583  KVYELISKGETEGVFQLESPGMKQFMTELKPKNLEDIIAGISLYRPGPMDQIPRYLANRN 642

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E IV  HPL+ P+L  T G ++YQEQVMQI + ++GYSL  +D++RRAM KK  + M+
Sbjct: 643  HPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRSDLVRRAMAKKKMDVME 702

Query: 727  KQKERFISG------------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI G            A +NG+ +  A  +F+ +  FA+Y FNKSHAAAYAVI+Y
Sbjct: 703  QERKNFIYGIVDEEGNVIVPGALRNGLDEVTANKLFDEMLDFANYAFNKSHAAAYAVIAY 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YPVEF+AA +   +DN++KI  + Q  ++  I+++PP +N     F V +++
Sbjct: 763  QTAYLKRYYPVEFMAALLNSFVDNLDKIAFYVQVCKKMGIKVLPPDINESDSYFTVVEDK 822

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L+A+K VG      I+     +  F S+ DF  R+   +LN++ +ESL+ AGA   
Sbjct: 823  IRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAGAFSS 882

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            FG  R QLL   D + +  +    N  N   ++F   + +   +           +    
Sbjct: 883  FGVRRSQLLSVYDKLMENIKKNRNNNLNGQISLFGEVEQSHGVEFEFPDLEEFPKNRLLS 942

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---------ATIRGNNIRLAAMVVSK 1004
             E+  LG Y SGHPL+ Y   + K+      +                  + +A ++ +K
Sbjct: 943  MEKETLGLYISGHPLEEYMEDIPKITNATTLDFKVSEEEMFQPKLQDNQEVVIAGVIATK 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + K T+  + + +VT  +     E   FP
Sbjct: 1003 KIKFTKNNNMMAFVTIEDLYGTVEVIVFP 1031


>gi|297569370|ref|YP_003690714.1| DNA polymerase III, alpha subunit [Desulfurivibrio alkaliphilus AHT2]
 gi|296925285|gb|ADH86095.1| DNA polymerase III, alpha subunit [Desulfurivibrio alkaliphilus AHT2]
          Length = 1192

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1036 (41%), Positives = 616/1036 (59%), Gaps = 23/1036 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YS+L+GA+ L+ +L +       A+AITD   +F ALEF  KA  AGI+PI
Sbjct: 15   FVHLHVHTQYSMLDGAIRLDRLLAQCKEYGMEAVAITDHGAMFGALEFYVKAKKAGIKPI 74

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC+  +   D    + +          +VLL    EGYQ L++L S     +      R
Sbjct: 75   IGCEFYVAPADRRDKSAKSAGAAAHH--LVLLAMNNEGYQNLMKLASCAQF-EGFHYKPR 131

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L     +GLI LT    G +           A+      +KLF DRLY+ LQ ++
Sbjct: 132  IDYELLSR-HNQGLIALTACLHGQLPMLLTRGDYDGAKAAAGKLQKLFPDRLYLELQENK 190

Query: 191  GYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              ++      + +LA   +LPLVATN+  +L+ E+ +AH+VL+ +     ++ + R R +
Sbjct: 191  IAEQQTVNDGLKKLAAELKLPLVATNDCHYLNREEAQAHEVLLCIQTGKTMADQGRFRFS 250

Query: 250  PDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D       +EM   FS  PEA+  TV++A RC+  L + +   P F   E +      E
Sbjct: 251  TDELFFKSPAEMKKSFSHCPEAIAETVKVAARCNVELDLSSHHFPHFPIPEGE----TLE 306

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +     A  GLE R  +            ++YR RL+ E++VI +M F GYFLIVADFI 
Sbjct: 307  SVFSKDAREGLEKRFTEIRRLTELTPEQEEEYRARLEHEIDVIIKMGFPGYFLIVADFIN 366

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK + IPVGPGRGSGAGS+ A+A+ ITDIDP+ + L+FERFLN +R SMPDFD+DFCQ+
Sbjct: 367  WAKDHEIPVGPGRGSGAGSLVAWAMRITDIDPMPYGLIFERFLNIERKSMPDFDVDFCQE 426

Query: 426  RRDEVIRYVQNKY-GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            RR EVI YVQ KY G E VAQI+T+GS++A+A +RDVGRAL MPY +VDR+ KLIP +  
Sbjct: 427  RRGEVIEYVQQKYGGAEHVAQIVTYGSMKARAVVRDVGRALGMPYGEVDRIAKLIPEELG 486

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +AI  + R  +    +P V  LL  ++ LEGL RH STHAAG+VI  +P+ + +P
Sbjct: 487  ITLD-KAIDKEPRLGDLMKREPPVAELLNAARVLEGLQRHTSTHAAGVVISPKPMVEYLP 545

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPF 603
            + +       +TQ++MK  E  GLIKFDFLGLKTLT++ ++   +    G ++D+  I  
Sbjct: 546  LCKGP-KGEVLTQYDMKHTEMTGLIKFDFLGLKTLTVIDRACKLIKGDLGREIDIGAIAT 604

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661
            DD +TY LL     LG+FQLESSGMR  L  M+P+   D+IALV+LYRPGP+++ +   +
Sbjct: 605  DDPKTYDLLCKGDALGVFQLESSGMRSLLMKMKPEQFSDLIALVALYRPGPLESGMVDDF 664

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             N K+G+       P ++P+L+ET GVI+YQEQVM+IA +L+GYSL +AD LRRAMGKKI
Sbjct: 665  VNTKHGRMVAKYPLPQLEPILQETYGVIVYQEQVMKIANVLAGYSLGDADNLRRAMGKKI 724

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               MD +K++F++G +KN I    A  IF+L+AKFA YGFNKSH+AAYA+++YQTAW+K 
Sbjct: 725  AAVMDAEKDKFMAGCAKNNIDPKKAEYIFDLMAKFAGYGFNKSHSAAYALVAYQTAWLKA 784

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP +F+AA ++ +M N +K+ ++  + ++  I+++PP +N    DF V D+RI + LAA
Sbjct: 785  HYPAQFMAALLSCDMGNTDKVVRYINECKEHEIEVLPPDINESFRDFTVIDDRIRFGLAA 844

Query: 842  IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +K VG      I+E   AD P+ SL DFC RVD +K+NRRV+ESL+ AGA D  G  R Q
Sbjct: 845  VKNVGGAALESIIEIREADGPYKSLVDFCQRVDGRKVNRRVIESLIRAGAFDSLGAKRSQ 904

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQR 957
            L   LD     AQ  ++++ +   ++FA      ++   +I L +        +   E+ 
Sbjct: 905  LEAILDRALDQAQAAQRDKLSGQISLFAAMPTDQAERATEIELPEMPEWEEKQKLLFEKE 964

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             +GFY +GHPLD ++  L  +                 R+  ++   +  +++KG  + +
Sbjct: 965  TVGFYLTGHPLDKHRRELAALTDTDLHGLAEWPDNQPARIGGLIRQFKNHRSKKGDAMAF 1024

Query: 1018 VTFSEPAKEYEANFFP 1033
            VT  +     E   FP
Sbjct: 1025 VTLEDTVDSVEVVVFP 1040


>gi|261408717|ref|YP_003244958.1| DNA polymerase III subunit alpha [Paenibacillus sp. Y412MC10]
 gi|261285180|gb|ACX67151.1| DNA polymerase III, alpha subunit [Paenibacillus sp. Y412MC10]
          Length = 1241

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/1046 (37%), Positives = 612/1046 (58%), Gaps = 32/1046 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
             SFVHL VHS YSLL+GA  + +++ + AA    ++A+TD   ++ A+ F +   A GI+
Sbjct: 2    SSFVHLHVHSEYSLLDGAARIGDLVREAAALGMKSLALTDHGVMYGAVPFYKACLAQGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC+  I      +   +G      +  ++LL     GY+ L++L S  +L +     
Sbjct: 62   PIIGCEAYITAGSRKE---RGSRKDQPIYHLILLAKNETGYRNLMKLCSIGHL-EGYHYR 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI +  L     EG+I L+    G + +         A+   L ++ +FG+  Y+ LQ 
Sbjct: 118  PRIDMEALAA-HHEGIICLSACLGGEVPQHLLHGREAEAKAAALRYQAIFGEDYYLELQD 176

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ R   Q++QL+    +PLVATN+  +L+E D E  DVL+ +     V  +DR +
Sbjct: 177  HGMPEQKRVNPQLIQLSRETGIPLVATNDVHYLTENDAEVQDVLICIGTGKTVEDEDRLQ 236

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T   YLK+ S+M  ++  +PEA+ NT +IA +C   L+    ILP +         K 
Sbjct: 237  IQTNQLYLKSGSDMERLYPHVPEAILNTAKIADQCHLELEFGKSILPEYSS---LPEGKN 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                LR+  ++GL  R  +    +      +  QRLD+EL VI  M FS YFLIV DFI 
Sbjct: 294  AAEYLRDLCLSGLRERYEETERWQDEVQRSELEQRLDYELGVIESMGFSDYFLIVWDFIA 353

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A +  I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R++MPD DIDF  +
Sbjct: 354  YAHRKGIAVGPGRGSSAGSLVAYTLQITNVDPMKYKLLFERFLNPERITMPDIDIDFSDE 413

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI YV +KYG E VAQIITFG++ A+AA+RDVGRAL +P+  VD+  KLIPN    
Sbjct: 414  RRDEVIDYVVDKYGKEHVAQIITFGTMAARAAVRDVGRALNVPFGDVDKAAKLIPNHLGI 473

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+    + +E     P V  L++++ K+EG+ RHASTHAAGIVI   PL+  VP+
Sbjct: 474  SIE-RAMEQSPQLKEQYETKPKVRELIDMAMKVEGMPRHASTHAAGIVISREPLTDAVPL 532

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
              +      +TQ++M+ +E  GL+K DFLGL+TL++++++L ++ +  G ++D   +P D
Sbjct: 533  Q-EGSEKTALTQYSMENLESVGLLKMDFLGLRTLSIIERTLKWIQELTGSELDFEQVPDD 591

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY +L    T G+FQLES+G+R+ L+ ++P   EDI+++ +LYRPGP++ I  +   
Sbjct: 592  DQATYEMLGRGETAGVFQLESAGIRRVLKDLKPSVFEDIVSVNALYRPGPMEFIPKFIQA 651

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+ +    HP + P+L +T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E 
Sbjct: 652  KHGRIEPEYPHPDLIPILGDTYGIIVYQEQIMQIASTMAGFSLGEADLLRRAVSKKKREV 711

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D+++  F+SG+ K G ++  A  +++++ +FA+YGF ++HAAAY V+++QTA++K HYP
Sbjct: 712  LDRERSHFVSGSLKLGYTEDEANRVYDMIVRFANYGFPRAHAAAYGVLAFQTAYLKAHYP 771

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------------- 831
            V F+A+ +T  M +  K+ ++  +AR+ +I++MPP VN     F                
Sbjct: 772  VPFMASMLTAVMGSHRKVAEYVLEARRIDIEVMPPDVNESGTYFTPVMSRTAAEGSDKQA 831

Query: 832  ----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   I + LAAIK VGT    +I+E   +KPF+SL DFC RVD +  N+RV+ESL+ 
Sbjct: 832  DSPAGGGIRFGLAAIKNVGTQAVENIVEIRREKPFESLLDFCRRVDLRVCNKRVIESLIQ 891

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGA D     R QL+  LD   + A    K R +    +F   +    D I         
Sbjct: 892  AGAFDSLQGHRSQLVAMLDETVEAAVKWRKERDDLQIQLFDFVETANWD-IEYPDIPPYT 950

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +S + E E+ +LG Y SGHPLD ++  L + G     +       +   +A MVVS +  
Sbjct: 951  ASQQLEFERELLGMYLSGHPLDGFEETLTESGADRLMDLHEAEDESMATVAGMVVSLKTI 1010

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T++G  + ++   +  +  E   FP
Sbjct: 1011 TTKQGKSMAFMECEDQIERCEVVLFP 1036


>gi|256752386|ref|ZP_05493246.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
            CCSD1]
 gi|256748721|gb|EEU61765.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
            CCSD1]
          Length = 1101

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1049 (37%), Positives = 603/1049 (57%), Gaps = 45/1049 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+G+  + +++ K       AIAITD   ++  ++F ++A A GI+PI
Sbjct: 2    FVHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAQGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +    M ++          +VLL     GY+ L+++V+   + +      R
Sbjct: 62   IGCEIYVAPRS---MQDREYGIDNENYHLVLLAKDMTGYKNLMKIVTVASI-EGFYYKPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +   +L+E  +EGLI L+   +G +         + A++  L +  +FG    Y+ LQ H
Sbjct: 118  VDREFLKE-HSEGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLELQDH 176

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
               ++     ++++L+    +PLVATN+  +L ++D +AH+VL+ +     +  +DR   
Sbjct: 177  GILEQQKVNKELIRLSKETGIPLVATNDVHYLEKKDAKAHEVLLCIQTGKTIDDEDRMSF 236

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM ++FS   EA+ENT +IA  C+   + +   LP++   E  D     
Sbjct: 237  PTDEFYLKSPEEMENLFSCCKEAIENTEKIADMCNVEFEFNKTKLPKYDLPEGVDSC--- 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LRN    GL  R           +++  +RLD+EL+VI +M +  YFLIV DFI++A
Sbjct: 294  -EYLRNLCYEGLYKRYKN-------PSKEVIERLDYELSVIEQMGYVDYFLIVWDFIKFA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N I  GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC +RR
Sbjct: 346  KDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG + VAQIITFG++ A+A +RDVGRAL  PY++VD + K+IP +    +
Sbjct: 406  QEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDVIAKMIPFELGMTI 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                ++ +   +     +  V +L++IS+ LEGL RHASTHAAG+VI   PL   VP+ +
Sbjct: 466  DKA-LSLNPELKARYENEEKVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYVPLQK 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDH 606
            +   D  VTQF M  +E+ GL+K DFLGL+TLT+++ +++     RGV +D   + +DD 
Sbjct: 525  N--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVEKNRGVTIDFDSMEYDDP 582

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y L++   T G+FQLESSGM+Q +  ++P  +EDIIA +SLYRPGP+D I  Y   KN
Sbjct: 583  KVYELISKGETEGVFQLESSGMKQFMAELKPKNLEDIIAGISLYRPGPMDQIPRYLANKN 642

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E IV  HPL+ P+L  T G ++YQEQVMQI + ++GYSL  +D++RRAM KK  + M+
Sbjct: 643  HPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRSDLVRRAMAKKKMDVME 702

Query: 727  KQKERFISG------------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI G            A +NG+ +  A  +F+ +  FA+Y FNKSHAAAYAVI+Y
Sbjct: 703  QERKNFIYGIVDEEGNVIVPGALRNGLDEATANKLFDEMLDFANYAFNKSHAAAYAVIAY 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YPVEF+AA +   +DN++K+  + Q  R+  I+++PP +N     F V +++
Sbjct: 763  QTAYLKRYYPVEFMAALLNSFVDNLDKVAFYVQVCRKMGIKVLPPDINESDSYFTVVEDK 822

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L+A+K VG      I+     +  F S+ DF  R+   +LN++ +ESL+ AGA   
Sbjct: 823  IRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAGAFSS 882

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            FG  R QLL + D + +  +    N  N   ++F   + T               S    
Sbjct: 883  FGVRRSQLLSAYDKLMENIKKNRNNNLNGQISLFGEVEQTHGVGFEFPDLEEFPKSRLLS 942

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---------ATIRGNNIRLAAMVVSK 1004
             E+  LG Y SGHPL+ Y   + K+      +                  + +A ++ +K
Sbjct: 943  MEKETLGLYISGHPLEEYMEDIPKITNATTLDFKVSEEEMFQPKLQDNQEVVIAGVIATK 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + K T+  + + +VT  +     E   FP
Sbjct: 1003 KIKFTKNNNIMAFVTIEDLYGTVEVIVFP 1031


>gi|189425779|ref|YP_001952956.1| DNA polymerase III subunit alpha [Geobacter lovleyi SZ]
 gi|189422038|gb|ACD96436.1| DNA polymerase III, alpha subunit [Geobacter lovleyi SZ]
          Length = 1179

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1042 (41%), Positives = 627/1042 (60%), Gaps = 22/1042 (2%)

Query: 5    LE-KSP--SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            +   SP   FVHL +HS YSLL+GA+ + +++ K    Q PA+AITD  N+F A+EF  K
Sbjct: 3    MPENSPVTPFVHLHLHSQYSLLDGAIRIEDLVSKAKQYQMPALAITDHGNMFGAVEFYLK 62

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
               AGI+PIIGC+L I         ++G +       ++LL    EGY+ L  L S  Y 
Sbjct: 63   CKKAGIKPIIGCELYIAPDSRFSKDSKGIS--DAAYHLILLCQNLEGYKNLSYLTSAGY- 119

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             +      R+  + L++  +EGLI L+    G +         + A +    + +LF DR
Sbjct: 120  KEGFYYRPRVDRALLEQ-HSEGLIALSACLKGEVAMQCGRGKMEDALETARWYSQLFPDR 178

Query: 182  LYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ +Q +   ++     +++++A    LPLVATN+  +L+ ED +AH+VL+ +     +
Sbjct: 179  YYIEIQENTLPEQDVVNQRLLEVARELNLPLVATNDCHYLNREDAKAHEVLLCIQTGKTM 238

Query: 241  SQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            S     R +  + Y+K   EM + F   PEA+ NTV IA RC+  L +         E  
Sbjct: 239  SDPTHMRFSADEFYVKTPEEMAAAFHYAPEAIANTVAIAERCNLELPLEKEYYFPHFEP- 297

Query: 300  CDDIQKEEENELRNKAVAGLEVR----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                 K  ++ L  +AV+GLE R     A+     G   Q Y  RL  EL+ I +MKF  
Sbjct: 298  --PEGKTHDDMLEEQAVSGLEERLITIRAKYPDMTGEQVQAYHDRLRTELDCIRQMKFPA 355

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI WAK+  IPVGPGRGS AGS+ AYA+ ITD+DPL ++LLFERFLNP+R+SM
Sbjct: 356  YFLIVADFINWAKRQGIPVGPGRGSAAGSLVAYAIKITDLDPLPYNLLFERFLNPERISM 415

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DFCQD+R++VI YV  KYG ERV QIITFG+++AKA +RDVGRAL M Y  VD++
Sbjct: 416  PDIDVDFCQDQREKVIEYVVQKYGRERVCQIITFGTMKAKAVVRDVGRALDMAYGDVDKI 475

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             KLIP+D    +  +AI  + + +E   ADP V +LLE +  LEGL RHA THAAG+V+ 
Sbjct: 476  AKLIPDDLKMTIE-KAIKQEPQLKEMAAADPKVAQLLETANCLEGLARHAGTHAAGVVVA 534

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
               L + +P+Y+D ++    TQ++MK++E  GL+KFDFLGLK LT++Q ++  + + +  
Sbjct: 535  PNQLEEYLPVYKDQKTGGINTQYSMKYVEMVGLVKFDFLGLKNLTVIQNAVRMIREGQNP 594

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ +  DD  +Y L+T   T GIFQLESSGM++ L  ++P C ED+IA  +LYRPGP
Sbjct: 595  DFDITRLRDDDQASYDLITAGNTTGIFQLESSGMKEMLVKLKPSCFEDVIAACALYRPGP 654

Query: 655  IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +   +V  +  RK+G++K+V   P ++P+LK+T GVI+YQEQVMQI++ L+GYSL  AD+
Sbjct: 655  LGCGMVDEFIERKHGRQKVVYDLPQLEPILKDTYGVIVYQEQVMQISRSLAGYSLGRADL 714

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK    M K+KE F+ GA   G+    A  IF+ +AKFA+YGFNKSH+AAYA+I
Sbjct: 715  LRRAMGKKDPAVMAKEKEPFLEGAKAQGLDIKKAEAIFDQMAKFAEYGFNKSHSAAYALI 774

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +YQTA++K HYPVEF+AA ++ +MD+ +K+ K   D R+  I+++PP +NT    F V  
Sbjct: 775  AYQTAYLKAHYPVEFMAALLSCDMDSTDKVLKSISDCREQGIEVLPPDINTSGQSFTVSG 834

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              + + L A+KGVG      I+EA AD PF  + DFC RVD +++N+RV+E+LV  GA D
Sbjct: 835  KSMRFGLGAVKGVGGGAVESIIEARADGPFTDIYDFCERVDLRRVNKRVMEALVKCGAFD 894

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSV 950
                 R  L+ +LD+     Q  ++ R +   ++F       + +    L      +   
Sbjct: 895  SLHKHRAPLMAALDDATTAGQRFQEERDSAQVSLFGDMPTATATRSGRKLPDIEEWHDKE 954

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            +   E+  LGF  +GHPLD Y   ++++                +R+  +V S ++  T+
Sbjct: 955  KLGYEKEALGFLITGHPLDRYASDIKRLASAEIARLPEFPDNCEVRVCGIVTSLKEIITK 1014

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            KG R+G+VT  +   + E   F
Sbjct: 1015 KGDRMGFVTIEDLTGQIEITVF 1036


>gi|315122785|ref|YP_004063274.1| DNA polymerase III subunit alpha [Candidatus Liberibacter
            solanacearum CLso-ZC1]
 gi|313496187|gb|ADR52786.1| DNA polymerase III subunit alpha [Candidatus Liberibacter
            solanacearum CLso-ZC1]
          Length = 1226

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 895/1034 (86%), Positives = 968/1034 (93%), Gaps = 1/1034 (0%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            L Q +E+SP FVHLQVHSSYSLLEGALSLNNILDK  ADQQPAIAITDTNNLF ALEFSQ
Sbjct: 15   LNQQVERSPGFVHLQVHSSYSLLEGALSLNNILDKAIADQQPAIAITDTNNLFGALEFSQ 74

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            KAC AGIQPIIGCQ++IDMQD L++T++GK+ FP +PSIVLLVS AEGYQRLIELVSRMY
Sbjct: 75   KACLAGIQPIIGCQIEIDMQDGLEVTHKGKSFFPELPSIVLLVSKAEGYQRLIELVSRMY 134

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            LL+QG +SVRI  SWLQEIGTEGLIMLTGGSSG IDRAF FN+ Q+AEKRLL+FK +FG+
Sbjct: 135  LLNQGHKSVRIYFSWLQEIGTEGLIMLTGGSSGSIDRAFLFNNPQIAEKRLLSFKNIFGN 194

Query: 181  RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            RLYVNLQRHRGYDRYRESQV+QLAY HELPLVATNN+LFLS+EDY+AHDVLMAVAHSTV+
Sbjct: 195  RLYVNLQRHRGYDRYRESQVIQLAYKHELPLVATNNALFLSQEDYDAHDVLMAVAHSTVI 254

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            SQ+DRPRVTPDHYLKNR+EM+S+F+DLPEAL+NTVEIARRCSFILQVH PILPRFI+KEC
Sbjct: 255  SQEDRPRVTPDHYLKNRAEMLSMFADLPEALDNTVEIARRCSFILQVHKPILPRFIDKEC 314

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            DD +K EENELR KA+ GLE RL+QG IAKGY AQDYR+RLDFEL+VIARMKFSGYFLIV
Sbjct: 315  DDFEKIEENELRTKAIEGLETRLSQGIIAKGYSAQDYRKRLDFELDVIARMKFSGYFLIV 374

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI
Sbjct: 375  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 434

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQDRRDEVI+YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP
Sbjct: 435  DFCQDRRDEVIQYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 494

Query: 481  NDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            N+PAHPVS  QAIADDSRF+EA L DP VDRLLEIS KLEGLYRHASTHAAGIVIGDRPL
Sbjct: 495  NNPAHPVSLKQAIADDSRFQEAILDDPFVDRLLEISLKLEGLYRHASTHAAGIVIGDRPL 554

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            SQL+PMYRDVRSD+PVTQFNMKW+EKAGL+KFDFLGLKTLT+LQKSLD L QRG+KVDLS
Sbjct: 555  SQLIPMYRDVRSDIPVTQFNMKWVEKAGLVKFDFLGLKTLTVLQKSLDLLEQRGIKVDLS 614

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            LIPFDDHETYHLLT KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI+NI 
Sbjct: 615  LIPFDDHETYHLLTKKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIENIT 674

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            +YNNRKNGKEKIVSIHPLID +LKETQGVI+YQEQVMQIAQLLSGYSLSEADVLRRAMGK
Sbjct: 675  IYNNRKNGKEKIVSIHPLIDSILKETQGVIVYQEQVMQIAQLLSGYSLSEADVLRRAMGK 734

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KIKEEMDKQKERF+SGASKNG+S  +AVNIFELLAKFADYGFNKSHAAAYAVISY+TAWM
Sbjct: 735  KIKEEMDKQKERFVSGASKNGLSNIMAVNIFELLAKFADYGFNKSHAAAYAVISYRTAWM 794

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI+ PSV T CVDF+VG+  IYYSL
Sbjct: 795  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIILPSVQTSCVDFEVGEKCIYYSL 854

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AAIKGVGT TA HIM   ADKPF+SLEDFCSRVDSK+LNRRVLESL+FAGALDCFGYSR 
Sbjct: 855  AAIKGVGTITAHHIMTVRADKPFESLEDFCSRVDSKQLNRRVLESLIFAGALDCFGYSRE 914

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            QL QSLDNIQKYAQW+EKNRTN   NIF  E+G+FS+KI+LE+FSVENSS RFE+E+RVL
Sbjct: 915  QLYQSLDNIQKYAQWIEKNRTNDQANIFVDEEGSFSEKISLEEFSVENSSARFEHERRVL 974

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            GFYFSGHPLDVYK IL+KMGIK YEES+A+++ + IRLA MV+SK+QKKTRKGSRIGWVT
Sbjct: 975  GFYFSGHPLDVYKAILQKMGIKSYEESIASVKESIIRLAVMVMSKEQKKTRKGSRIGWVT 1034

Query: 1020 FSEPAKEYEANFFP 1033
            FSEP KEYE  FFP
Sbjct: 1035 FSEPDKEYEGIFFP 1048


>gi|297545038|ref|YP_003677340.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii
            subsp. mathranii str. A3]
 gi|296842813|gb|ADH61329.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii
            subsp. mathranii str. A3]
          Length = 1145

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1049 (36%), Positives = 599/1049 (57%), Gaps = 45/1049 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VHS YSLL+G+  + +++ K       AIAITD   ++  ++F ++A A GI+PI
Sbjct: 2    FAHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAHGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +    M ++          +VLL     GY+ L+++V+   + +      R
Sbjct: 62   IGCEIYVAPRS---MRDREYGIDNENYHLVLLAKDMVGYKNLMKIVTMASI-EGFYYKPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +   +L+E  ++GLI L+   +G +         + A++  L +  +FG    Y+ LQ H
Sbjct: 118  VDKEFLKE-HSKGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLELQDH 176

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
               ++     ++++L+    +PLVATN+  +L ++D +AH+VL+ +     +  +DR   
Sbjct: 177  GILEQQKVNKELIRLSKETGIPLVATNDVHYLDKKDAKAHEVLLCIQTGKTIDDEDRMSF 236

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM ++FS   EA+ENT +IA  C+   + +   LP++   E  D     
Sbjct: 237  PTDEFYLKSPEEMENLFSYCKEAIENTEKIASMCNVEFEFNKTKLPKYDLPEGVDSY--- 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LRN    GL  R            ++  +RLD+EL+VI +M +  YFLIV DFI++A
Sbjct: 294  -EYLRNLCYEGLYKRYKN-------PNKEVIERLDYELSVIKQMGYVDYFLIVWDFIKFA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N I  GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC +RR
Sbjct: 346  KDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG + VAQIITFG++ A+A +RDVGRAL  PY++VD + K+IP +    +
Sbjct: 406  QEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDVIAKMIPFELGMTI 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                ++ +   +     D  V +L++IS+ LEGL RHASTHAAG+VI   PL   VP+ +
Sbjct: 466  DKA-LSLNPELKVRYENDERVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYVPLQK 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
            +   D  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ + +   V +D   + +DD 
Sbjct: 525  N--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGVTIDFDSMEYDDP 582

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y L++   T G+FQLESSGM+Q +  ++P  +EDIIA +SLYRPGP+D I  Y   KN
Sbjct: 583  KVYELISKGETEGVFQLESSGMKQFMTELKPKNLEDIIAGISLYRPGPMDQIPRYLANKN 642

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E IV  HPL+ P+L  T G ++YQEQVMQI + ++GYSL  AD++RRAM KK  + M+
Sbjct: 643  HPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRADLVRRAMAKKKMDVME 702

Query: 727  KQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI G              +NG+ ++ A  +F+ +  FA+Y FNKSHAAAYAVI+Y
Sbjct: 703  QERKNFIYGMVDDEGNVIVPGALRNGLDESTANKLFDEMLDFANYAFNKSHAAAYAVIAY 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YPVEF+AA +   +DN++KI  +    ++  I+++PP +N     F V +++
Sbjct: 763  QTAYLKRYYPVEFMAALLNSFVDNLDKIAFYVHVCKKMGIKVLPPDINESDSYFTVVEDK 822

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L+A+K VG      I+     +  F S+ DF  R+   +LN++ +ESL+ AGA   
Sbjct: 823  IRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAGAFSS 882

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            FG  R QLL   D + +  +    N  N   ++F   +     +           S    
Sbjct: 883  FGVRRSQLLSVYDKLMENIKKNRNNNINGQISLFGEIEQKHGVEFEFPDLEEFPKSRLLS 942

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---------ATIRGNNIRLAAMVVSK 1004
             E+  LG Y SGHPL+ Y   + K+      +                  + +A ++ +K
Sbjct: 943  MEKETLGLYISGHPLEEYVEDIPKITNATTLDFKVSEEEMFQPKLRDNQEVVIAGVISTK 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + K T+  + + +VT  +     E   FP
Sbjct: 1003 KIKFTKSNNMMAFVTIEDLYGTVEVIVFP 1031


>gi|289578818|ref|YP_003477445.1| DNA polymerase III subunit alpha [Thermoanaerobacter italicus Ab9]
 gi|289528531|gb|ADD02883.1| DNA polymerase III, alpha subunit [Thermoanaerobacter italicus Ab9]
          Length = 1145

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1049 (36%), Positives = 599/1049 (57%), Gaps = 45/1049 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VHS YSLL+G+  + +++ K       AIAITD   ++  ++F ++A A GI+PI
Sbjct: 2    FAHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAHGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +    M ++          +VLL     GY+ L+++V+   + +      R
Sbjct: 62   IGCEIYVAPRS---MRDREYGIDNENYHLVLLAKDMVGYKNLMKIVTMASI-EGFYYKPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +   +L+E  ++GLI L+   +G +         + A++  L +  +FG    Y+ LQ H
Sbjct: 118  VDKEFLKE-HSKGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLELQDH 176

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
               ++     ++++L+    +PLVATN+  +L ++D +AH+VL+ +     +  +DR   
Sbjct: 177  GILEQQKVNKELIRLSKETGIPLVATNDVHYLDKKDAKAHEVLLCIQTGKTIDDEDRMSF 236

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM ++FS   EA+ENT +IA  C+   + +   LP++   E  D     
Sbjct: 237  PTDEFYLKSPEEMENLFSYCKEAIENTEKIASMCNVEFEFNKTKLPKYDLPEGVDSY--- 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LRN    GL  R            ++  +RLD+EL+VI +M +  YFLIV DFI++A
Sbjct: 294  -EYLRNLCYEGLYKRYKN-------PNKEVIERLDYELSVIKQMGYVDYFLIVWDFIKFA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N I  GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC +RR
Sbjct: 346  KDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG + VAQIITFG++ A+A +RDVGRAL  PY++VD + K+IP +    +
Sbjct: 406  QEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYPYAEVDVIAKMIPFELGMTI 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                ++ +   +     D  V +L++IS+ LEGL RHASTHAAG+VI   PL   VP+ +
Sbjct: 466  DKA-LSLNPELKVRYENDERVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYVPLQK 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
            +   D  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ + +   V +D   + +DD 
Sbjct: 525  N--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVKKNKGVTIDFDSMEYDDP 582

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y L++   T G+FQLESSGM+Q +  ++P  +EDIIA +SLYRPGP+D I  Y   KN
Sbjct: 583  KVYELISKGETEGVFQLESSGMKQFMTELKPKNLEDIIAGISLYRPGPMDQIPRYLANKN 642

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E IV  HPL+ P+L  T G ++YQEQVMQI + ++GYSL  AD++RRAM KK  + M+
Sbjct: 643  HPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRADLVRRAMAKKKMDVME 702

Query: 727  KQKERFISGAS------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI G              +NG+ ++ A  +F+ +  FA+Y FNKSHAAAYAVI+Y
Sbjct: 703  QERKNFIYGMVDDEGNVIVPGALRNGLDESTANKLFDEMLDFANYAFNKSHAAAYAVIAY 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YPVEF+AA +   +DN++KI  +    ++  I+++PP +N     F V +++
Sbjct: 763  QTAYLKRYYPVEFMAALLNSFVDNLDKIAFYVHVCKKMGIKVLPPDINESDSYFTVVEDK 822

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L+A+K VG      I+     +  F S+ DF  R+   +LN++ +ESL+ AGA   
Sbjct: 823  IRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAGAFSS 882

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            FG  R QLL   D + +  +    N  N   ++F   +     +           S    
Sbjct: 883  FGVRRSQLLSVYDKLMENIKKNRNNNINGQISLFGEIEQKHGVEFEFPDLEEFPKSRLLS 942

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---------ATIRGNNIRLAAMVVSK 1004
             E+  LG Y SGHPL+ Y   + K+      +                  + +A ++ +K
Sbjct: 943  MEKETLGLYISGHPLEEYVEDIPKITNATTLDFKVSEEEMFQPKLRDNQEVVIAGVISTK 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + K T+  + + +VT  +     E   FP
Sbjct: 1003 KIKFTKSNNMMAFVTIEDLYGTVEVIVFP 1031


>gi|167039837|ref|YP_001662822.1| DNA polymerase III DnaE [Thermoanaerobacter sp. X514]
 gi|300915388|ref|ZP_07132702.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
 gi|307724839|ref|YP_003904590.1| DNA polymerase III subunit alpha [Thermoanaerobacter sp. X513]
 gi|166854077|gb|ABY92486.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X514]
 gi|300888664|gb|EFK83812.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
 gi|307581900|gb|ADN55299.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X513]
          Length = 1145

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1049 (36%), Positives = 602/1049 (57%), Gaps = 45/1049 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+G+  + +++ K       AIAITD   ++  ++F ++A A GI+PI
Sbjct: 2    FVHLHVHSEYSLLDGSCRIKDLIAKTKELNMKAIAITDHGVMYGVIDFYKEAVAQGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +    M ++          +VLL     GY+ L+++V+   + +      R
Sbjct: 62   IGCEIYVAPRS---MQDREYGIDNENYHLVLLAKDMTGYKNLMKIVTVASI-EGFYYKPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +   +L+E  +EGLI L+   +G +         + A++  L +  +FG    Y+ LQ H
Sbjct: 118  VDREFLKE-HSEGLIALSACLAGEVPSYILRGEYEKAKEAALFYDSIFGRGNFYLELQDH 176

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
               ++     ++++L+    +PLVATN+  +L ++D +AH+VL+ +     +  +DR   
Sbjct: 177  GILEQQKVNKELIRLSKETGIPLVATNDVHYLEKKDAKAHEVLLCIQTGKTIDDEDRMSF 236

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM ++FS   EA+ENT +IA  C+   + +   LP++   E  D     
Sbjct: 237  PTDEFYLKSPEEMENLFSCCKEAIENTEKIADMCNVEFEFNKTKLPKYDLPEGVDSC--- 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LRN    GL  R           +++  +RLD+EL+VI +M +  YFLIV DFI++A
Sbjct: 294  -EYLRNLCYEGLYKRYKN-------PSKEVIERLDYELSVIEQMGYVDYFLIVWDFIKFA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N I  GPGRGS AGS+ AY L IT+IDP++++LLFERFLNP+R+SMPD D DFC +RR
Sbjct: 346  KDNGIMTGPGRGSAAGSLVAYTLGITNIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG + VAQIITFG++ A+A +RDVGRAL   Y++VD + K+IP +    +
Sbjct: 406  QEVIDYVVKKYGKDNVAQIITFGTMAARAVIRDVGRALNYLYAEVDVIAKMIPFELGMTI 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                ++ +   +     +  V +L++IS+ LEGL RHASTHAAG+VI   PL   VP+ +
Sbjct: 466  DKA-LSLNPELKARYENEEKVKQLIDISRSLEGLPRHASTHAAGVVISKEPLVNYVPLQK 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDH 606
            +   D  VTQF M  +E+ GL+K DFLGL+TLT+++ +++     RGV +D   + +DD 
Sbjct: 525  N--EDSIVTQFPMTTLEELGLLKMDFLGLRTLTVIRDTIEMVEKNRGVTIDFDSMEYDDP 582

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y L++   T G+FQLESSGM+Q +  ++P  +EDIIA +SLYRPGP+D I  Y   +N
Sbjct: 583  KVYELISKGETEGVFQLESSGMKQFMAELKPKNLEDIIAGISLYRPGPMDQIPRYLANRN 642

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E IV  HPL+ P+L  T G ++YQEQVMQI + ++GYSL  +D++RRAM KK  + M+
Sbjct: 643  HPESIVYDHPLLKPILDVTYGCMVYQEQVMQIVRDVAGYSLGRSDLVRRAMAKKKMDVME 702

Query: 727  KQKERFISG------------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI G            A +NG+ +  A  +F+ +  FA+Y FNKSHAAAYAVI+Y
Sbjct: 703  QERKNFIYGIVDEEGNVIVPGALRNGLDEATANKLFDEMLDFANYAFNKSHAAAYAVIAY 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YPVEF+AA +   +DN++K+  + Q  R+  I+++PP +N     F V +++
Sbjct: 763  QTAYLKRYYPVEFMAALLNSFVDNLDKVAFYVQVCRKMGIKVLPPDINESDSYFTVVEDK 822

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L+A+K VG      I+     +  F S+ DF  R+   +LN++ +ESL+ AGA   
Sbjct: 823  IRFGLSAVKNVGLNMTMEIVSERERNGKFKSVVDFFERMQDSQLNKKAVESLIKAGAFSS 882

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            FG  R QLL + D + +  +    N  N   ++F   + T               S    
Sbjct: 883  FGVRRSQLLSAYDKLMENIKKNRNNNLNGQISLFGEVEQTHGVGFEFPDLEEFPKSRLLS 942

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---------ATIRGNNIRLAAMVVSK 1004
             E+  LG Y SGHPL+ Y   + K+      +                  + +A ++ +K
Sbjct: 943  MEKETLGLYISGHPLEEYMEDIPKITNATTLDFKVSEEEMFQPKLQDNQEVVIAGVIATK 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + K T+  + + +VT  +     E   FP
Sbjct: 1003 KIKFTKNNNIMAFVTIEDLYGTVEVIVFP 1031


>gi|83590706|ref|YP_430715.1| DNA polymerase III DnaE [Moorella thermoacetica ATCC 39073]
 gi|83573620|gb|ABC20172.1| DNA polymerase III catalytic subunit, DnaE type [Moorella
            thermoacetica ATCC 39073]
          Length = 1156

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/1031 (38%), Positives = 604/1031 (58%), Gaps = 27/1031 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLL+GA  + +++        PA+A+TD   ++ A+EF + A   GI+P
Sbjct: 3    SFVHLHVHSEYSLLDGAGRIKDLVRAAGEMGMPALALTDHGVMYGAVEFYKAAREQGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +                  +VLL + A GY+ L  LVS  +L +      
Sbjct: 63   IIGCEVYVAPRSRHDREPH---RDDYQYHLVLLATDATGYRNLTALVSAAFL-EGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L    ++GLI L+   +G +      N    A +     +++FG +  Y+ LQ 
Sbjct: 119  RVDRELLSR-HSQGLIALSACLAGEVPAHLLKNREDAAYEAATWLREVFGPENFYLELQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                ++     ++V LA   ++PLVATN+  ++ ++   AHDVL+ +     +   +R R
Sbjct: 178  QGLPEQRQLNRRLVDLAARLKIPLVATNDVHYIRQDQARAHDVLLCIQTGKTLDDPNRLR 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T   YLK+ +EM ++F ++P AL NT+ IA RC F        LP +     +D    
Sbjct: 238  FPTAQFYLKSPAEMDNLFREVPSALANTLAIAERCHFDFTFGRLHLPAYQVPAGED---- 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR  +  GL+ R               RQRL++EL +I +M + GYFLIV D + +
Sbjct: 294  AASYLRRLSYEGLKRRYPHDDGTA-------RQRLEYELGIIEQMGYPGYFLIVWDMVNF 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  IPVGPGRGS AGS+ AY L IT IDPLR++LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  ARRRGIPVGPGRGSAAGSLVAYCLGITSIDPLRYNLLFERFLNPERVSMPDIDMDFCFER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI+YV  KYG + VAQIITFG++ A+AA+RDVGR L +P  +VDR+ K++P +    
Sbjct: 407  RDEVIQYVLEKYGRDHVAQIITFGTMAARAAVRDVGRVLGLPLGEVDRIAKMVPMELGIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+A     +E+   +  V  LL+ ++ +EG+ RHAS HAAGIVI   PL   +P+ 
Sbjct: 467  LE-RALATSPDLKESYEGNREVRELLDTARAIEGMPRHASIHAAGIVITREPLIHYLPLQ 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL-QKSLDFLAQRGVKVDLSLIPFDD 605
            +    D   TQ+ M+ +E+ GL+K D LGL+TLT++           G ++DL  +P DD
Sbjct: 526  K--TGDAVTTQYPMQAVEELGLLKMDLLGLRTLTVIGHAREAIRRNHGRELDLESLPLDD 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
              TY LL +  T GIFQLESSGMR  L+ ++P+  EDIIALV+LYRPGP+ + +   +  
Sbjct: 584  RPTYQLLASGETSGIFQLESSGMRAILKELKPERFEDIIALVALYRPGPLGSGMVEDFIK 643

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G   I  +HP ++P+LK+T GVI+YQEQVM+IA  L+G++L +AD+LRRAMGKK  E
Sbjct: 644  RKHGVTPISYLHPALEPILKDTYGVILYQEQVMRIASELAGFTLGQADLLRRAMGKKKPE 703

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  Q++RF++GA    I + +A  IFEL+  FA YGFN SH+AAYA+++YQTA++K HY
Sbjct: 704  VLAAQRDRFLAGAEAKAIPRDVAQKIFELMEYFAGYGFNASHSAAYALVAYQTAYLKAHY 763

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P E + A ++   ++++K++ +  + ++  I ++PP VN   VDF V   +I + LAA+K
Sbjct: 764  PAELMGALLSSVAEHLDKMEPYLAECQRLGIAVLPPDVNESGVDFTVTGRQIRFGLAAVK 823

Query: 844  G-VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
                      I    A  PF SL DFC RVDS++ N+RV+ESL+  GA +    +R QLL
Sbjct: 824  NAGRAAALAIIAAREAGGPFTSLLDFCRRVDSRQANKRVVESLIRCGAFNSINPNRRQLL 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              LD   + A   +++R +   ++        +D   L + +  + +     E+ +LGFY
Sbjct: 884  AGLDECLEVAARRQEDRRSGQVSLMDLVPEEVND-PPLPQVTDFSRADILAMEKELLGFY 942

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             SGHPL+ Y P+L+K+      +      G+ + +  +V   ++  TRKG  +  +T  +
Sbjct: 943  LSGHPLEPYAPVLKKLTSHSLADLAEIADGSQVTIGGLVSGLRRLVTRKGDPMAVLTLED 1002

Query: 1023 PAKEYEANFFP 1033
             + + EA  FP
Sbjct: 1003 FSGQVEAVLFP 1013


>gi|329929691|ref|ZP_08283383.1| putative DNA polymerase III subunit alpha [Paenibacillus sp. HGF5]
 gi|328935954|gb|EGG32411.1| putative DNA polymerase III subunit alpha [Paenibacillus sp. HGF5]
          Length = 1242

 Score =  839 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/1046 (37%), Positives = 612/1046 (58%), Gaps = 32/1046 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
             SFVHL VHS YSLL+GA  + +++ + AA    ++A+TD   ++ A+ F +   A GI+
Sbjct: 2    SSFVHLHVHSEYSLLDGAARIGDLVREAAALGMKSLALTDHGVMYGAVPFYKACLAQGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC+  I      +   +G      +  ++LL     GY+ L++L S  +L +     
Sbjct: 62   PIIGCEAYITAGSRKE---RGSRKDQPIYHLILLAKNETGYRNLMKLCSIGHL-EGYHYR 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI +  L     EG+I L+    G + +         A+   L ++ +FG+  Y+ LQ 
Sbjct: 118  PRIDMEALAA-HHEGIICLSACLGGEVPQHLLHGREAEAKAAALRYQAIFGEDYYLELQD 176

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ R   Q++QL+    +PLVATN+  +L+E D E  DVL+ +     V  +DR +
Sbjct: 177  HGIPEQKRVNPQLIQLSRETGIPLVATNDVHYLTENDAEVQDVLICIGTGKTVEDEDRLQ 236

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T   YLK+ S+M  ++  +PEA+ NT +IA +C   L+    ILP +         K+
Sbjct: 237  IQTNQLYLKSGSDMERLYPHVPEAILNTAKIADQCRLELEFGKSILPEYSS---LPEGKD 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                LR+  ++GL  R       +      +  QRLD+EL VI  M FS YFLIV DFI 
Sbjct: 294  AAEYLRDLCLSGLRERYEGTERWQDEGQRSELEQRLDYELGVIESMGFSDYFLIVWDFIA 353

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A +  I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R++MPD DIDF  +
Sbjct: 354  YAHRKGIAVGPGRGSSAGSLVAYTLQITNVDPMKYKLLFERFLNPERITMPDIDIDFSDE 413

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI YV +KYG E VAQIITFG++ A+AA+RDVGRAL +P+  VD+  KLIPN    
Sbjct: 414  RRDEVIDYVVDKYGKEHVAQIITFGTMAARAAVRDVGRALNVPFGDVDKAAKLIPNHLGI 473

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+    + +E     P V  L++++ K+EG+ RHASTHAAGIVI   PL+  VP+
Sbjct: 474  SIE-RAMEQSPQLKEQYETKPKVRELIDMAMKVEGMPRHASTHAAGIVISREPLTDAVPL 532

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
              +      +TQ++M+ +E  GL+K DFLGL+TL++++++L ++ +  G ++D   +P D
Sbjct: 533  Q-EGSEKTALTQYSMENLESVGLLKMDFLGLRTLSIIERTLRWIQELTGRELDFDQVPDD 591

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY +L    T G+FQLES+G+R+ L+ ++P   EDI+++ +LYRPGP++ I  +   
Sbjct: 592  DQATYEMLGRGETAGVFQLESAGIRRVLKDLKPSVFEDIVSVNALYRPGPMEFIPKFIQA 651

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+ +    HP + P+L +T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E 
Sbjct: 652  KHGRIEPEYPHPDLIPILGDTYGIIVYQEQIMQIASTMAGFSLGEADLLRRAVSKKKREV 711

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D+++  F+SG+ K G ++  A  +++++ +FA+YGF ++HAAAY V+++QTA++K HYP
Sbjct: 712  LDRERSHFVSGSLKLGYTEDEANRVYDMIVRFANYGFPRAHAAAYGVLAFQTAYLKAHYP 771

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------------- 831
            V F+A+ +T  M +  K+ ++  +AR+ +I++MPP VN     F                
Sbjct: 772  VPFMASMLTAVMGSHRKVAEYVLEARRIDIEVMPPDVNESGTYFTPVMSRSAAEGSELQA 831

Query: 832  ----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   I + LAAIK VGT    +I+E   +KPF+SL DFC RVD +  N+RV+ESL+ 
Sbjct: 832  DSPAGGGIRFGLAAIKNVGTQAVENIVEIRREKPFESLLDFCRRVDLRVCNKRVIESLIQ 891

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGA D     R QL+  LD   + A    K R +    +F   +    D I         
Sbjct: 892  AGAFDSLQGHRSQLVAMLDETVEAAVKWRKERDDLQIQLFDFVETANWD-IEYPDIPSYT 950

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +S + E E+ +LG Y SGHPLD ++  L + G     +       +   +A MVVS +  
Sbjct: 951  ASQQLEFERELLGMYLSGHPLDGFEETLTESGADRLMDLHEAEDESMATVAGMVVSLKTI 1010

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T++G  + ++   +  +  E   FP
Sbjct: 1011 TTKQGKAMAFMECEDQIERCEVVLFP 1036


>gi|39996502|ref|NP_952453.1| DNA polymerase III subunit alpha [Geobacter sulfurreducens PCA]
 gi|39983383|gb|AAR34776.1| DNA polymerase III, alpha subunit [Geobacter sulfurreducens PCA]
 gi|298505519|gb|ADI84242.1| DNA polymerase III, alpha subunit [Geobacter sulfurreducens KN400]
          Length = 1155

 Score =  839 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1027 (40%), Positives = 612/1027 (59%), Gaps = 14/1027 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA+ L +++ K+ +   PA+AITD   +F A+EF  K     ++P
Sbjct: 2    SFVHLHLHTQYSLLDGAIRLGDLVKKVKSHDMPAVAITDHGAMFGAMEFYLKCKDKDVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG ++ I          +G         ++LL     GY+ L +LVS  +  +      
Sbjct: 62   VIGAEVYIAPGSRFVKEARGGEA-GAGYHLLLLCENMTGYRNLSKLVSIGF-KEGFYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L E   EGLI L+    G +      +    A      +  LF DR Y+ LQ +
Sbjct: 120  RIDKEVLAE-NAEGLICLSACLKGEVAYLCERDRVAEAVDVARWYADLFPDRYYIELQEN 178

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ +    ++++A    LPLVATN+  +L+ ED  AH+VL+ +     ++   R R 
Sbjct: 179  GLVEQDKANRGLLEVAREVGLPLVATNDCHYLNREDARAHEVLLCIQTGKTMNDPSRMRF 238

Query: 249  T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +  + Y+K   EM + F   PEA+ NTV+IA RC           PRF       + +  
Sbjct: 239  SVDEFYVKTPEEMAAAFHYAPEAISNTVKIAERCDLSFDFKTYHFPRFEPPVGLSLDQML 298

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E   R    + L    A+ +       Q Y  RL  EL  I +M F GYFLIVADFI WA
Sbjct: 299  EEAARTGLESRLTAIRAKHSSMTAEQEQAYWDRLAIELACIKQMGFPGYFLIVADFINWA 358

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K + IPVGPGRGS AGS+ AYA+ ITD+DP+ ++LLFERFLNP+R+SMPD D+DFCQDRR
Sbjct: 359  KDHGIPVGPGRGSAAGSLVAYAIRITDLDPIPYNLLFERFLNPERISMPDIDVDFCQDRR 418

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+YV  KYG ++V QIITFG++ A+A +RDVGRAL M Y +VDR+ KL+P      +
Sbjct: 419  EEVIQYVTEKYGRDKVCQIITFGTMSARAVIRDVGRALDMTYGEVDRIAKLVPEVLGITL 478

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                IA + +  EA  ADP V  LLE++ +LEGL RHASTHAAG+V+    L Q  P+Y+
Sbjct: 479  EKA-IAQEPKLNEAAEADPRVKELLEVALRLEGLARHASTHAAGVVVAPDVLEQFCPVYK 537

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDH 606
            D +S    TQ++MK++EK GL+KFDFLGLK LT++  ++    A +    D++ +  DD 
Sbjct: 538  DQKSGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIFNAVRHIRADKKPDFDIAALRDDDE 597

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664
            E+Y LL    T G+FQLESSGMR+ L  ++P C EDIIA+ +LYRPGP+ + +   + +R
Sbjct: 598  ESYKLLQAGNTTGVFQLESSGMRELLRKLKPSCFEDIIAVCALYRPGPLGSGMVDDFIDR 657

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G++K+V   P ++P+LK+T GVI+YQEQVMQIA+ L+GYSL  AD+LRRAMGKK   E
Sbjct: 658  KHGRKKVVYDLPQLEPILKDTYGVIVYQEQVMQIARSLAGYSLGGADLLRRAMGKKDPAE 717

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ++ F+ GA  NGI    A  IF+L+AKFA+YGFNKSH+AAYA+++YQTA++K HYP
Sbjct: 718  MAKQRDIFLEGAKNNGIDLQKAGAIFDLMAKFAEYGFNKSHSAAYALVAYQTAYLKAHYP 777

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEF+AA +T +M N +K+ K   D R+  I+++PP +N   + F+V  N I + L A+K 
Sbjct: 778  VEFMAALLTEDMANTDKVVKNIADCREMGIEVLPPDINASDLSFRVLGNSIRFGLGAVKN 837

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG +    I+EA  D PF  + +FC RVD +K+N+RV+ESL+  GA D  G  R QL  +
Sbjct: 838  VGESAIEAIIEARGDGPFKDIFEFCERVDLRKVNKRVVESLIKCGAFDSTGGRRSQLTAA 897

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEK-----GTFSDKITLEKFSVENSSVRFENEQRVL 959
            L++     Q +++ + +   ++F  E+     G    K+ L      +       E+  L
Sbjct: 898  LEDAMSLGQKIQQEKESAQVSLFGAEEIVRTNGNGKGKVQLPDLPEWDDKFLLAQEKEAL 957

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            GF+ +GHPL  ++  +R+               + +++  +V + ++  T+KG R+ + T
Sbjct: 958  GFFITGHPLGRHEKDIRRFTTADTATLEERADKSEVKICGIVATMKELMTKKGDRMAFAT 1017

Query: 1020 FSEPAKE 1026
              +    
Sbjct: 1018 LEDLVGS 1024


>gi|297617868|ref|YP_003703027.1| DNA polymerase III subunit alpha [Syntrophothermus lipocalidus DSM
            12680]
 gi|297145705|gb|ADI02462.1| DNA polymerase III, alpha subunit [Syntrophothermus lipocalidus DSM
            12680]
          Length = 1131

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/1030 (38%), Positives = 611/1030 (59%), Gaps = 25/1030 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  HS YSLL+GA+ +++++ +      PA+AITD   L+  ++F ++A  AGI+PI
Sbjct: 4    FVHLHTHSEYSLLDGAVRVSSLVKRAKELGMPALAITDHGVLYGVIDFYKQARKAGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +     T +       +  + LL    +GY+ L+++VS+ +L +      R
Sbjct: 64   IGCEVYVAPRHRFDRTPK---VDDALYHLTLLCENQDGYRNLVQMVSKAFL-EGFYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRH 189
            +    L++ G  GLI L+G  +G +       + + A      F+++FG+   ++ +Q H
Sbjct: 120  VDKELLEQHGR-GLIALSGCIAGEVPELLLAGNYEEARAVAGYFREVFGENNFFLEVQDH 178

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++      +  L+   ++PLVATN+  +L+ +D   HDVL+ +    V++ + R R 
Sbjct: 179  GLSEQRVVNEAMCHLSRELDVPLVATNDVHYLNRDDAFIHDVLLCIQTGKVLTDESRMRF 238

Query: 249  TPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                +      EM S+F+ +PEA+ NTV IA RCS      +  LP F   E        
Sbjct: 239  PCPEFYFKSGEEMSSLFAHIPEAVTNTVTIAERCSVDFGFDSFCLPEFPLPEG----ATA 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+ L + A   L  R A               RL  EL+VI RM F+GYFLIV D + WA
Sbjct: 295  ESYLEDLAWKKLRERFAHPGT-------KVIDRLRLELDVINRMGFAGYFLIVQDLVHWA 347

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K   I VGPGRGS AGS+ +Y L ITDI+PL + LLFERFLNP+R++MPD DIDFC ++R
Sbjct: 348  KNRGIRVGPGRGSAAGSLVSYVLGITDINPLEYGLLFERFLNPERITMPDIDIDFCFEKR 407

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D+VI YV  KYG +RVAQIITFG++ A+AA+RDVGR L+ PYS+VDR+ K++P +    +
Sbjct: 408  DQVINYVIEKYGSDRVAQIITFGTMAARAAIRDVGRVLEYPYSEVDRIAKMVPAELGISL 467

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                +       EA   D  V RL++ ++ LEG  RHAS HAAG+VIG   LS+++P+ R
Sbjct: 468  DRA-LEVSGDLAEAYKNDFRVRRLVDTARALEGFPRHASVHAAGVVIGRESLSRVLPLQR 526

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                   VTQF  + +E+ GL+K D LGL+TLT++ + LD + + RG ++D+  I  DD 
Sbjct: 527  TA-DGHVVTQFTKETVEEIGLLKMDILGLRTLTVIDRCLDIIRKTRGYEIDIDHISLDDP 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664
            +TY LL+   T+G+FQLES G+R+ L+ ++P   ED+IA+++LYRPGP+ + +   + NR
Sbjct: 586  DTYRLLSEGDTVGVFQLESEGLRRLLQEVRPSSFEDLIAIIALYRPGPLGSGMVEDFVNR 645

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G++ I  +HP ++P+L+ET GVI+YQEQVM+IA  L+ +S+ EADVLRRAMGKK  +E
Sbjct: 646  KHGRQPIEYLHPKLEPILRETYGVILYQEQVMRIASELADFSMGEADVLRRAMGKKKPDE 705

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +  Q+ +F+ GA +NGI +  A ++FEL+  FA YGFNKSH+AAYA++SYQTA++K HYP
Sbjct: 706  LAAQRNKFVEGAYRNGIDRETASSLFELMEHFAGYGFNKSHSAAYALVSYQTAYLKAHYP 765

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VE++ A +T  +DN +++  + ++ R+  + I+PP +N    +F V   RI + L AIK 
Sbjct: 766  VEYMCAFLTSVIDNQDRVVYYLKECRRMGMDILPPDINESFENFTVAGGRIRFGLGAIKN 825

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG    R I+EA  +  F SL +FC RVD ++LN+RV+E+L+ AGA D  G  R + L  
Sbjct: 826  VGINAVRSIIEARKEGRFSSLLEFCLRVDLRQLNKRVMENLILAGAFDSLGLKRKEALSL 885

Query: 905  LDNIQKYAQWVEKNRTNKHENIF-AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
            LD     A  V     +   ++F      T             +   + + E+ VLGFY 
Sbjct: 886  LDECLALAVEVRAAMDSAQPSLFVDDAAATVVQDPVPRSKGEFSVQEKLKKEKEVLGFYV 945

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S +PL+ Y+ ++  +      E      G  +R+ A V + ++ +++KG     +   + 
Sbjct: 946  SQNPLEEYREVIPYLMSHEISELSKLDEGQVVRIVATVTAMKRSRSKKGEPWARLVLEDF 1005

Query: 1024 AKEYEANFFP 1033
              + EA  FP
Sbjct: 1006 TGKVEAVVFP 1015


>gi|295100819|emb|CBK98364.1| DNA polymerase III catalytic subunit, DnaE type [Faecalibacterium
            prausnitzii L2-6]
          Length = 1170

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1045 (35%), Positives = 585/1045 (55%), Gaps = 40/1045 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +H+ YSLL+GA  ++ ++D++    Q AIAITD   ++  ++F + A  AGI+P
Sbjct: 13   DFVHLHIHTEYSLLDGACRIDQLMDRVKECGQSAIAITDHGVMYGCVQFYKAAKKAGIKP 72

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC++ +  +      N+          ++LL     GY+ LI++VS  + ++      
Sbjct: 73   VIGCEVYVATRTRFDKVNK----IDGNNHLILLCKNETGYKNLIKMVSAAF-VEGFYSKP 127

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L++   EGLI L+   +G I +A      + A+   L ++ LFG    Y+ LQ 
Sbjct: 128  RVDKQLLEQYH-EGLICLSACLAGEIPQAILAGDYERAKSTALWYQDLFGKGNYYIELQD 186

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    D     Q+++LA    +P+ ATN+S +L ++D +   +L+ +     +   DR  
Sbjct: 187  HGLEEDTIVLPQLIKLARETGIPMAATNDSHYLRKDDAKMQSILLCIQTGKTIQDADRME 246

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + Y+K   EM  +F+ +PEA  NT +IA +C+F        +P +      D Q  
Sbjct: 247  FRTDEFYVKTTDEMYELFAMVPEACANTQKIADQCNFDFDFGHTKIPYYKAPNGMDNQ-- 304

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                       GLE R            Q  + RL +E+ V+  M ++ Y+LIV D+I +
Sbjct: 305  --EFFEKLCWDGLERRYGSDV------PQSNKDRLTYEIGVVKSMGYTNYYLIVWDYINY 356

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IPVGPGRGSGAGS+ AY + ITDIDP+R++L+FERFLNP+R+SMPDFD+DFC +R
Sbjct: 357  AKSQGIPVGPGRGSGAGSIAAYCVGITDIDPIRYNLIFERFLNPERVSMPDFDVDFCYER 416

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG + VAQI+TFG++ A+ A+RDVGR + MPY  VD + K +P +    
Sbjct: 417  RQEVIDYVNRKYGADHVAQIVTFGTMAARNAIRDVGRVMGMPYQSVDVVAKQVPMELKMT 476

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +    +      +    +DP V  L++ + K+EG+ RHASTHAAG+VI   P    +P+ 
Sbjct: 477  LKRA-LEVSPELKRMYDSDPQVTELIDTALKVEGMPRHASTHAAGVVITPEPTDYYLPL- 534

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                  LPVTQFNM  IE+ GL+K DFLGL+TLT+++ +   + ++     +  + +DD 
Sbjct: 535  -ATNDGLPVTQFNMTEIEELGLLKMDFLGLRTLTVIRDAEAAVQKKDPSFSIQKLDYDDA 593

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             TY +L    T G+FQLESSGM+Q L G+QP  +ED+IAL+SLYRPGP+D+I  Y   ++
Sbjct: 594  ATYKMLGQGETEGVFQLESSGMKQVLVGLQPQNLEDVIALISLYRPGPMDSIPTYLRNRH 653

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              +KI    P +  +L  T G I+YQEQVMQI + L+G+S  +AD +RRAM KK    M+
Sbjct: 654  EPDKISYKTPQLAHILDVTNGCIVYQEQVMQIFRELAGFSFGQADNVRRAMSKKKHAVME 713

Query: 727  KQKERFISGASKNGI----------SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
             ++E F+ G ++ G           S+ +A  I++ ++ FA Y FNKSHAA YA +++QT
Sbjct: 714  AEREHFVHGCTEPGHECPGCVANGISEEVANEIYDEMSSFASYAFNKSHAACYAYVAFQT 773

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K HYP EF+AA +T  +DN +K+ ++  +  +  ++++PP VN     F   + +I 
Sbjct: 774  AYLKCHYPSEFMAALLTSVLDNTDKVIEYSGECARLGLKVLPPDVNISNGGFTADNGKIR 833

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            + L A+K VG      ++E   +KP+ SL DFC R+   +LNRR +E L+ AGA D  G 
Sbjct: 834  FGLNAVKNVGRNLIERVVEERKEKPYSSLYDFCKRMHGTELNRRAVECLIKAGAFDSMGV 893

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKFSVENSSVRF 952
            +R  L++++D I K  +   +       ++F       +   +D   ++ F   + +   
Sbjct: 894  NRHSLVEAVDGIIKSVESDSRRNLEGQLDLFSVMSGESQTADTDSYEIKPFPEYSHTELL 953

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAAMVVSKQQKK 1008
            + E+ V G Y SGHPLD Y+    +      +E        + GN++R+   VV  +   
Sbjct: 954  QQEKEVSGLYLSGHPLDAYREQSARFASNSIKELTGEDAHKLDGNHVRIVCTVVKNRMMT 1013

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            T+  + + + +  +     E   FP
Sbjct: 1014 TKSNTMMAFTSVEDLTGTMEVIVFP 1038


>gi|134300158|ref|YP_001113654.1| DNA polymerase III DnaE [Desulfotomaculum reducens MI-1]
 gi|134052858|gb|ABO50829.1| DNA polymerase III catalytic subunit, DnaE type [Desulfotomaculum
            reducens MI-1]
          Length = 1225

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/1048 (38%), Positives = 613/1048 (58%), Gaps = 44/1048 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA  +N +  +       ++AITD   +F  ++F +     G++PI
Sbjct: 12   FVHLHVHTEYSLLDGASRINQMAKQAKESGMNSLAITDHGCMFGVVDFYKVCHKEGVKPI 71

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +  +  +  T +          +VLL    EGY+ L++LVS  Y  +      R
Sbjct: 72   LGCEVYVAPRRRIDRTPK---LDDQPNHLVLLAENQEGYKNLLKLVSLGYT-EGFYYKPR 127

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +    LQ    +GLI L+   +G +      +  + A +    +  +FG D  ++ LQ H
Sbjct: 128  VDKELLQRYH-KGLIALSACLAGEVADKILGSQPEKARQAAREYVDIFGKDNFFLELQDH 186

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     +++++A   ++PLVATN+  +L  E  E  DVL+ +     ++   R + 
Sbjct: 187  GYQEQRTVNRELLKIAKELQIPLVATNDVHYLKREHAEIQDVLLCIQTGKSINTPGRMKF 246

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + + YLK+  EM  +F+++P+AL NT+ IA RC   L+     LP F   E    +   
Sbjct: 247  ESQEMYLKSPHEMNLLFAEIPDALSNTLRIAERCQVDLEFGKYHLPYFTVPE----ESSP 302

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR K + G   R    +          ++RL++ELNVI +M +  YFLIV DFI +A
Sbjct: 303  AQYLREKCLEGAIKRYGHCSGP-------VQERLEYELNVIGKMGYDEYFLIVWDFIHYA 355

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  I VGPGRGS AGS+ +YAL IT+IDPL++ LLFERFLNP+R+SMPD DIDF  +RR
Sbjct: 356  RQKGIAVGPGRGSAAGSIVSYALGITNIDPLKYGLLFERFLNPERISMPDIDIDFDYERR 415

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI Y+  KYG +RVAQIITFG++ A+AA+RDVGRAL MPY  VDR+ KL+P +    +
Sbjct: 416  GEVIEYIVQKYGTDRVAQIITFGTMAARAAIRDVGRALDMPYGDVDRVAKLVPTELNITI 475

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+      + A   DP V RL++ +  LEG+ RHASTHAAG+VI   PL + +P+ +
Sbjct: 476  -AKALTSSPDLKAAYDQDPEVKRLVDTAAALEGMPRHASTHAAGVVISREPLVEYLPLSK 534

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                 L  TQF M  +E+ GL+K D LGL+ LT++ ++++ + Q +  K+D++ IP DD 
Sbjct: 535  TS-DGLVTTQFPMTTVEELGLLKMDLLGLRNLTVISETVNLIEQIKETKLDINTIPLDDQ 593

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664
             T+ +LT    +G+FQLESSGMR  L  ++P+  EDI+ALV+LYRPGP+ + +   +  R
Sbjct: 594  ATFDMLTRGEGVGVFQLESSGMRNILRELKPNAFEDIVALVALYRPGPLGSGMVEDFIQR 653

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+ K+   HP ++P+LKET GVI+YQEQVM IA++++GYSL +AD LR+AMGKKI + 
Sbjct: 654  KHGQNKVDYFHPDLEPILKETYGVILYQEQVMMIARIMAGYSLGQADALRKAMGKKIAKI 713

Query: 725  MDKQKERF----------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            M   ++ F                I GA   G S+ +A  +F+L+  FA YGFNKSH+AA
Sbjct: 714  MGMHRDWFINGSTLDDKGKPLKNPIPGAVARGYSRQLAEKMFDLMEYFAGYGFNKSHSAA 773

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQTA++K +YPVE++AA +T   DN +K+  +  + R+  IQ++PP +N    +F
Sbjct: 774  YALVSYQTAYLKANYPVEYMAALLTSVRDNTDKVVLYIDECRRMGIQVLPPDINLSRENF 833

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
               +  I + +AA+K VG    + I++      PF    D C R+D++  NRRVLESL+ 
Sbjct: 834  TAANGAIRFGMAAVKNVGWGAVQEIIQIREKKGPFTGFYDLCGRLDTRIANRRVLESLIK 893

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSV 945
            AGALD FGY R QLL  LD   ++A   +++R     ++F     + +   ++ L     
Sbjct: 894  AGALDAFGY-RSQLLAGLDTGLEHAARSQRDREQGQVSLFDLMSESPAQVMELKLPHVPR 952

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
              S  + E E+  LG Y SGHPL  +  +L ++ ++          GNN+ +A ++ + +
Sbjct: 953  LTSRQQLEMEKEALGLYISGHPLSEFGWLLDQLEVQRVVHLAELPDGNNLLVAGIISTIK 1012

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  +RKG  + ++T  +     E   FP
Sbjct: 1013 RITSRKGDPMAFLTLEDLTGSCEVVVFP 1040


>gi|304316261|ref|YP_003851406.1| DNA polymerase III subunit alpha [Thermoanaerobacterium
            thermosaccharolyticum DSM 571]
 gi|302777763|gb|ADL68322.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
            thermosaccharolyticum DSM 571]
          Length = 1144

 Score =  836 bits (2160), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1049 (36%), Positives = 603/1049 (57%), Gaps = 45/1049 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+G+  +  ++ +       +IAITD   ++ A+EF ++A + GI+PI
Sbjct: 2    FVHLHVHSEYSLLDGSCRIKELVKRAKELDMDSIAITDHGVMYGAIEFYKEAKSQGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +                  ++LL     GY+ L+++VS+  + D      R
Sbjct: 62   IGCEIYVAPRSLYDKEYGIDNL---NYHLILLCKNMTGYENLMKIVSKASI-DGFYYKPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +   +L +  +EGLI L+    G I      +  + A+   + +  +FG    Y+ LQ H
Sbjct: 118  VDHEYL-KNHSEGLIALSSCLGGEIPSYLLSDDYEKAKDTAILYNSIFGKGNFYLELQYH 176

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
               ++    S++++L+   ++P+VATN+  +L  +D+ AH+VL+ +     +   DR   
Sbjct: 177  GLSEQEKVNSELIKLSKELDIPIVATNDVHYLDRDDHMAHEVLLCIQTGKNMDDADRMSF 236

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM  +FS   EALENT +IA  C+   + +   LP++            
Sbjct: 237  PTDEFYLKSSDEMYEMFSYCREALENTEKIAEMCNLEFEFNKTKLPKYDVPNGM----TS 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR   + G+  R A         +++  +RL++EL+VI +M +  YFLIV DFI++A
Sbjct: 293  AEYLRKLCIEGVNKRYAN-------PSKEVIERLNYELSVIEKMGYVDYFLIVWDFIKFA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            + N I  GPGRGS AGS+ AY L IT IDP++++LLFERFLNP+R+SMPD D DFC +RR
Sbjct: 346  RDNGIMTGPGRGSAAGSLVAYCLGITKIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG ++VAQIITFG++ A+AA+RDVGRAL  PY++VD + K+IP +P   +
Sbjct: 406  QEVIDYVVKKYGEDKVAQIITFGTMAARAAIRDVGRALNFPYAEVDAIAKMIPFEPGMTI 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +AI  +   +E    D  + +L+EIS+ LEGL RHASTHAAG+VI   PL + VP+ +
Sbjct: 466  D-KAIGLNPELKEKYENDEKIRQLIEISRSLEGLPRHASTHAAGVVISSEPLVKYVPLQK 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
            +      VTQF M  +E+ GL+K DFLGL+TLT+++ +L+ + + R + VD+  I F+D 
Sbjct: 525  N--EGSIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDTLNIIKETRSIDVDIDNIDFEDK 582

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            E Y L++   T G+FQLESSGM+Q +  ++P+ +EDIIA +SLYRPGP+D I  Y   KN
Sbjct: 583  EVYALISKGDTEGVFQLESSGMKQFMTELKPEKLEDIIAGISLYRPGPMDQIPRYIENKN 642

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E I   HPL+ P+L  T G ++YQEQVMQI + L+GYSL  +D++RRAM KK  + M+
Sbjct: 643  HPENIKYEHPLLKPILDVTYGCMVYQEQVMQIVRDLAGYSLGRSDLVRRAMAKKKMKVME 702

Query: 727  KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI             GA   G+ +  A  +F+ +  FA+Y FNKSHAAAYAV+++
Sbjct: 703  EERKNFIYGIKDESGNYVVPGAINKGVDEATANRLFDEMIDFANYAFNKSHAAAYAVVAF 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YPVEF+AA +   +DN +K+  + Q  ++  IQ++PP +N     F V + +
Sbjct: 763  QTAYLKRYYPVEFMAALLNSFVDNTDKVAFYVQVLKKMGIQVLPPDINESYSHFSVVNGK 822

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + LAA+K VG      I+E    +  + S+ DF  R+D  +LN++ +ESL+ AGA D 
Sbjct: 823  IRFGLAAVKNVGLNATLEIVEDRKKNGRYISIVDFFERIDDMQLNKKAVESLIKAGAFDS 882

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            FG  R QLL   ++I        +       ++F  E        +L      +  +   
Sbjct: 883  FGVYRSQLLAVYEDIMDSIHKNRERNIKGQMSLFGSEIERNEVNYSLPDIKEFSQDMILS 942

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA---------TIRGNNIRLAAMVVSK 1004
             E+  +G Y SGHPLD ++  ++++      +                 ++ LA ++ SK
Sbjct: 943  MEKETMGLYISGHPLDEFQEDIQRVANCTTRDLKNGDDTFVKKSIFDNQDVVLAGIIESK 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + K T+  + + +V   +     +   FP
Sbjct: 1003 KIKFTKNNNMMAFVNLEDLYGTIDVIVFP 1031


>gi|313114111|ref|ZP_07799663.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii
            KLE1255]
 gi|310623520|gb|EFQ06923.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii
            KLE1255]
          Length = 1169

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1056 (35%), Positives = 593/1056 (56%), Gaps = 42/1056 (3%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +++ L  +  FVHL +H+ YSLL+GA  ++ ++D++    Q AIA TD   ++  ++F +
Sbjct: 1    MSEALPNTRPFVHLHIHTEYSLLDGACRIDQLMDRVKECGQTAIACTDHGVMYGCVQFYK 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  AGI+PIIGC++ +  +      N+          ++LL     GY+ LI++VS  +
Sbjct: 61   AAKKAGIKPIIGCEVYVATRTRFDKVNK----IDGNNHLILLCKNETGYKNLIKMVSAAF 116

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179
             ++      RI    L++   EGLI L+   +G + +A      + A+   L ++ LFG 
Sbjct: 117  -VEGFYSKPRIDKELLEKYH-EGLICLSACLAGEVPQAILAGDYERAKAAALWYRDLFGE 174

Query: 180  DRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +  Y+ LQ H   +      Q+++LA    +P+ ATN+S +L +ED +   +L+ +    
Sbjct: 175  ENYYIELQDHGLEEDNTVLPQLIKLARETGIPMAATNDSHYLRKEDAKMQGILLCIQTGK 234

Query: 239  VVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             +   D+    T + Y+K   EM  +FS +PEA ENT +IA +C+F        +P +  
Sbjct: 235  TIQDADKMEFQTDEFYVKTTDEMYELFSMVPEACENTAKIAEQCNFDFDFGHTKIPYYKA 294

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                D Q             GLE R            Q  + RL++E+ V+ +M ++ Y+
Sbjct: 295  PNGMDNQ----AFFEKLCWEGLERRYGPDV------PQANKDRLEYEIGVVKKMGYTNYY 344

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV D++ +AK   IPVGPGRGSGAGS+ AY++ ITDIDP+R++L+FERFLNP+R+SMPD
Sbjct: 345  LIVWDYVNYAKSQGIPVGPGRGSGAGSIAAYSVGITDIDPIRYNLIFERFLNPERVSMPD 404

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC +RR EVI YV  KYG + VAQI+TFG++ A+ A+RDVGR + +PY QVD + K
Sbjct: 405  FDVDFCYERRQEVIDYVNRKYGADHVAQIVTFGTMAARNAIRDVGRVMGIPYQQVDVVAK 464

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
             +P +    +  +A+      +     DP V  L++ + K+EG+ RHASTHAAG+VI   
Sbjct: 465  QVPMELKMTLK-RALEVSPELKRMYDTDPQVTELIDTALKVEGMPRHASTHAAGVVITPE 523

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            P    +P+       LPVTQFNM  IE+ GL+K DFLGL+TLT++  +   + +   +  
Sbjct: 524  PTDYYLPL--ATNDGLPVTQFNMTEIEELGLLKMDFLGLRTLTVIHDAETAVQKHHPEFS 581

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  + +DD +TY +L    T G+FQLESSGM+Q L G+QP  +EDIIAL+SLYRPGP+D+
Sbjct: 582  IQKLDYDDPDTYRMLGQGDTEGVFQLESSGMKQVLVGLQPQNLEDIIALISLYRPGPMDS 641

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y   ++  +KI    P +  +L  T G I+YQEQVMQI + L+G+S  +AD +RRAM
Sbjct: 642  IPTYLRNRHEPDKISYKTPQLAHILDVTNGCIVYQEQVMQIFRELAGFSFGQADNVRRAM 701

Query: 718  GKKIKEEMDKQKERF----------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             KK    M+ ++E F            G   NGIS+ +A  I++ ++ FA Y FNKSHAA
Sbjct: 702  SKKKHAVMEAEREHFVYGCTDPGNECPGCVANGISEKVANEIYDEMSSFASYAFNKSHAA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
             YA +++QTA++K HYP EF+AA +T  +DN +K+ ++  +  +  I+++PP VN     
Sbjct: 762  CYAYVAFQTAYLKCHYPSEFMAALLTSVLDNTDKVIEYSGECARLGIKVLPPDVNVSNGG 821

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F      +I + L A+K VG     ++++   +KP+ SL DFC R+   +LNRR +E L+
Sbjct: 822  FTADGSGQIRFGLNAVKNVGRNLIENVVKGRQNKPYTSLYDFCKRMHGNELNRRAVECLI 881

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----HEKGTFSDKITLE 941
             AGA D  G +R   +++++ I K  +   +   +   ++F+      + G   D   ++
Sbjct: 882  KAGAFDHLGNNRHSHVEAVEGILKSIETDSRRNLDGQLDLFSVMSGEAQGGASEDNYEIK 941

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRL 997
            +    +     + E+ V G Y SGHPLD Y+    ++     ++          G  +R+
Sbjct: 942  QLPEYSHKELLQQEKEVSGLYLSGHPLDAYREQSARIASHTIKDLTGEDAHVRDGEKVRI 1001

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               VV  +   T+  S + + +  +     E   FP
Sbjct: 1002 VCAVVKSRMMTTKSNSMMAFTSVEDLTGTMEVIVFP 1037


>gi|218778784|ref|YP_002430102.1| DNA polymerase III, alpha subunit [Desulfatibacillum alkenivorans
            AK-01]
 gi|218760168|gb|ACL02634.1| DNA polymerase III, alpha subunit [Desulfatibacillum alkenivorans
            AK-01]
          Length = 1168

 Score =  835 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1034 (39%), Positives = 604/1034 (58%), Gaps = 22/1034 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              FVHL VH+ YSLL+GA+ L+ ++++       A AITD   +F  LEF +KA +  I+
Sbjct: 2    SDFVHLHVHTQYSLLDGAIRLDALVNQCKEFGMDACAITDHGTMFGILEFYEKAKSKDIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC+  +  +     T   K        +VLL    +GY+ L  L +           
Sbjct: 62   PIIGCECYVARKSMEDKTPMDKDNR----HLVLLAENNQGYENLCRLATLAQRK-GFYYK 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
             RI    L+E  ++GLI L+    G I         ++AE+  L +K LFG D  Y+ +Q
Sbjct: 117  PRIDKKALEE-HSKGLICLSACLHGEIPMYISDGQMKLAEESALYYKNLFGPDHFYLEIQ 175

Query: 188  RHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   +      ++ +LA   ++PLV TN+  +L  +D +AH+VL+ +  +  +   +R 
Sbjct: 176  NNGLPEQEEMNQKLAELAEKLDIPLVGTNDCHYLRAKDAKAHEVLLCIQTNKTIHDTNRF 235

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  T   YLK+  EM+  F   P A +NTV+IA  C+    +     P+F  +E     K
Sbjct: 236  KFRTDQLYLKSPQEMIEYFKGFPGATDNTVKIAEMCNVEFDLSTFHFPQFPTEEG----K 291

Query: 306  EEENELRNKAVAGLEV-RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             E   L      G      A  A+      + Y +RL +EL VI  M F GYFLIV+DFI
Sbjct: 292  TEAEILTQMTWDGFHKRMDAIKAVNPAVDEEKYLERLKYELGVIQDMGFPGYFLIVSDFI 351

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            QW+K+N IPVGPGRGS AGS+ AYAL ITD+DPL   L+FERFLNP R SMPD D+DFC 
Sbjct: 352  QWSKRNGIPVGPGRGSAAGSLVAYALEITDLDPLEHKLIFERFLNPGRKSMPDIDVDFCI 411

Query: 425  DRRDEVIRYVQNKY-GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              R+    YV  KY G + V+QI TFGS+ A+A +RDVGRA+ +P  +VD + KLIP  P
Sbjct: 412  LGRERTFNYVVEKYGGGDYVSQITTFGSMNARAVVRDVGRAMAIPLGEVDVIAKLIPEAP 471

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A+  + +  E     P +  L+E++Q LEGL RHASTHAAG+VI D+PL + +
Sbjct: 472  KMTLK-KAMEQEPKLLEIMKDKPEIAELIEVAQVLEGLSRHASTHAAGVVIADKPLVEYL 530

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP 602
            P+Y + +    VTQF+MK +EK GL+KFDFLGL+ LT++  ++  +  Q     DL  + 
Sbjct: 531  PLY-EGKKGEVVTQFDMKRVEKIGLVKFDFLGLRNLTVIDNAIKLIEGQGKTPPDLMHLD 589

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--V 660
              D  TY+LL+   T G+FQLESSGM+  L  ++P+C ED++A+V+LYRPGP+++ +   
Sbjct: 590  VTDKATYNLLSRGDTTGVFQLESSGMKDLLARLKPECFEDVVAVVALYRPGPLNSGMVDD 649

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  RK+G   +    P ++P+LK+T GVI+YQEQVMQIA  L+ YS+SEAD LR+AMGKK
Sbjct: 650  FVKRKHGDIPVTYALPELEPILKDTYGVIVYQEQVMQIAAALASYSMSEADDLRKAMGKK 709

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I E+M +Q+ RF+ G  +N +    A  +F L+ KF +YGFNKSH+AAYA++S+QTA++K
Sbjct: 710  IAEKMAQQRIRFMDGCKENNVDLKKAEALFNLMEKFGEYGFNKSHSAAYALVSFQTAYLK 769

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
            TH+ VEF+A+ MT EMDN + + KF  + R  +I+++PP VNT  V F V + +I Y +A
Sbjct: 770  THFQVEFMASLMTSEMDNTDNVLKFMSECRDHDIEVLPPDVNTSSVSFTVLEGKIVYGMA 829

Query: 841  AIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AIKGVG      I+E    + PF+++ D C RVD +++N+RVLESLV AGA D  G  R 
Sbjct: 830  AIKGVGQGAVEAIVEERKANGPFENIFDLCERVDLRRVNKRVLESLVKAGAFDSTGAKRS 889

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            QL+  L++   + Q + K + +    +F   +   +    L      +  ++   E+  L
Sbjct: 890  QLMAVLESAIDHGQRISKEKNDPQMGLFGAIE-MPTITPALPDIEEWDDQLKLSYEKEAL 948

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            GF+ +GHPL  Y+ IL K               + +R+  M++S +   T+KG  + ++T
Sbjct: 949  GFFLTGHPLGKYEDILIKFANADTLTLPEMPDKSAVRVGGMILSTKNLVTKKGDPMAFIT 1008

Query: 1020 FSEPAKEYEANFFP 1033
              +     E   FP
Sbjct: 1009 LEDMKGSVEVVVFP 1022


>gi|328953644|ref|YP_004370978.1| DNA polymerase III, alpha subunit [Desulfobacca acetoxidans DSM
            11109]
 gi|328453968|gb|AEB09797.1| DNA polymerase III, alpha subunit [Desulfobacca acetoxidans DSM
            11109]
          Length = 1150

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1035 (40%), Positives = 609/1035 (58%), Gaps = 17/1035 (1%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P FVHL VH++YSLL+GA+ LN+++D   + + PA+AITD  N+F  +EF  KA  
Sbjct: 1    MA-TPGFVHLHVHTAYSLLDGAIRLNDLIDTALSMEMPAVAITDHGNMFGVVEFYTKAEK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIGC+L +     L+ + +          +VLL     GYQ L++LVS+  L + 
Sbjct: 60   AGLKPIIGCELYVAPGSRLEKSGK----KGDNYHLVLLAENLTGYQNLLKLVSKANL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 R+    L +   EGLI L+    G +      +  + AE     + ++F  R Y+
Sbjct: 115  FYYKPRVDRELLAD-HAEGLIALSACLHGVVAAHVVADDLKTAEIAAREYGEIFPGRFYL 173

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +Q +   ++    + ++++A    LP+VATN+  +L  ED  AHDVL+ +     ++  
Sbjct: 174  EVQANDLTEQQKVNAALLEMAPRLGLPVVATNDCHYLRPEDARAHDVLLCIQTGKTINTT 233

Query: 244  DRPRVTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R R + D        +M + F D P+ LE ++EIA RC   L +     P F  +    
Sbjct: 234  KRMRFSTDQLFFKSPVQMAAAFPDRPDLLEASLEIANRCQLELPLGEFHFPVFPLENGQT 293

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            ++ + + E R      L      GA       Q YR R++ EL ++ +M F+GYFL+VAD
Sbjct: 294  MEAQLQQEARRGLEHRLHQWQLSGAWPMEKI-QHYRARMEEELALLCQMGFAGYFLVVAD 352

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI++A+K +IPVGPGRGS AGS+ A AL ITD+DP+ + L FERFLNP+R SMPD D+DF
Sbjct: 353  FIRYARKRHIPVGPGRGSAAGSLVACALEITDLDPIAYGLFFERFLNPERKSMPDIDVDF 412

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR E+I YV  KYG E V QIITFGS++ +  +RDVGRAL +PY + D++ KL+P+ 
Sbjct: 413  CFERRGEIIDYVARKYGKEHVGQIITFGSMKTRQVIRDVGRALDLPYPEADKIAKLVPDV 472

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +   A+  + R REAR AD ++  +L I+  LEGL RHASTHAAG+VI D+PL   
Sbjct: 473  LKINL-RTALEKEPRLREARDADENIREVLTIAAALEGLPRHASTHAAGVVIADKPLWCY 531

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLI 601
            +P+Y+    D  +TQF MK +EK GLIKFDFLGL+TLT+L+ +      Q+    D   +
Sbjct: 532  LPLYKG-NKDEIITQFEMKGVEKVGLIKFDFLGLRTLTVLETAAQIVRRQKDKNFDYRQL 590

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P +D  T+ LL +  T G+FQLESSGMR+ L  ++P C ED+IALV+LYRPGP+++ +V 
Sbjct: 591  PLEDAATFELLRSGNTAGVFQLESSGMREKLVQLRPTCFEDLIALVALYRPGPLESGMVD 650

Query: 662  NNRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            +  K    +  +    P ++P+LKET G+I+YQEQVMQIA ++SGYS+ EAD+LRRAMGK
Sbjct: 651  DFIKRKHGELNVTYELPELEPILKETYGIILYQEQVMQIAGIISGYSMGEADILRRAMGK 710

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    M  QKERF SGA   G     A  +F L+ KFA YGFNKSH+AAYA I+YQTA++
Sbjct: 711  KEPAVMAAQKERFCSGAVSRGFPLAKAEKLFHLIEKFAGYGFNKSHSAAYAYITYQTAYL 770

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYP+EFLAA  T E+++   + K  Q+AR+  I ++PPS+N    DF V  ++I + L
Sbjct: 771  KAHYPLEFLAALFTSEINSPTTLTKHIQEAREDGIVLLPPSLNASERDFTVEGSQIRFGL 830

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            A +K VG    + I+EA    PF SL +F  R +  K+N++VLESL+ AGALD  G +R 
Sbjct: 831  AGVKNVGDNAIKAILEARKKGPFISLGNFLERANQTKVNKKVLESLIQAGALDFLGINRA 890

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
            +L   ++   + AQ   K +  +  ++F    E         L      +   +   E+ 
Sbjct: 891  RLFGGVEAALERAQVALKLQAARQMDMFGGLGEADLGEGDDWLPPVPEWDEQEKLAREKE 950

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             LG Y SGHPL  Y+  L+ +     ++         + L  ++V+ ++  T+KG R+ +
Sbjct: 951  ALGIYLSGHPLAKYRQQLQALTDLTIDDLAEKPENGPVLLGGLIVAVKETMTKKGERMAF 1010

Query: 1018 VTFSEPAKEYEANFF 1032
             T  +     E   F
Sbjct: 1011 ATLEDQVGSVEVVVF 1025


>gi|206901842|ref|YP_002251105.1| DNA polymerase III alpha subunit [Dictyoglomus thermophilum H-6-12]
 gi|206740945|gb|ACI20003.1| DNA polymerase III alpha subunit [Dictyoglomus thermophilum H-6-12]
          Length = 1127

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/1026 (39%), Positives = 626/1026 (61%), Gaps = 27/1026 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YSLL+GA  ++ ++D+      PA+AITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHVHTEYSLLDGACRIDELIDQALEFNMPAVAITDHGVMYGVIDFYKNAKEKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +          +       +  ++LL    EGY+ LI++VS  +L +      
Sbjct: 62   IIGCEVYVAPGSRFDKKQRTD-----LYHLILLAKDFEGYKNLIKIVSLSFL-EGFYYKP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L+E  ++G+I L+   +G I      N+ + A+  +  +  +FG+  Y+ LQ +
Sbjct: 116  RVDKELLREY-SKGIIALSSCLAGEIPSYILQNNLEKAKNAIKEYLDIFGEDFYLELQNN 174

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++    S +++L+    +PLVATN+  +L +ED E HD+L+ +   + ++ KDR R 
Sbjct: 175  GMEEQEYVNSYLIKLSRELNVPLVATNDVHYLRKEDAEIHDILLCIQTGSKLNDKDRLRF 234

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + Y K+  EM ++F D+P+A+ENT++IA +C+  + ++  ILP F   E +      
Sbjct: 235  KTNEFYFKSPEEMKALFKDVPDAIENTLKIAEKCNVEIPLNNVILPVFEVPEGE----TL 290

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++        G + R  +         ++ R+RL +E++VI +M FSGYFLIV DF+ +A
Sbjct: 291  DSYFERLCWEGAKKRFGED------IPENIRERLSYEISVIKQMGFSGYFLIVQDFVNYA 344

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K   IPVGPGRGS AGS+ +Y L IT+I+P R+ L+FERFLNP+R++MPD DIDFC +RR
Sbjct: 345  KSRGIPVGPGRGSAAGSLVSYVLGITNIEPTRWGLIFERFLNPERVTMPDIDIDFCFERR 404

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI YV+NKYG E VAQIITFG++ A+A++RDVGR L +PY++VDR+ KLI   P +  
Sbjct: 405  EEVIEYVRNKYGKEHVAQIITFGTMAARASVRDVGRVLDVPYNEVDRIAKLI---PPNTS 461

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+      R     +P   R++EI++++EG  RHAS HAAGIVI   PL + VP+  
Sbjct: 462  IEEALNTSEELRNLVENNPQAKRIIEIAKRIEGNARHASIHAAGIVISKDPLMEYVPLQ- 520

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
             +     VTQ  M  +E+ GL+K DFLGL+TLT++  ++  + +   +++D++ I   D 
Sbjct: 521  VMNGTDVVTQLPMTNLEELGLLKMDFLGLRTLTVIYDTIKKIKENYGIEIDINNISLSDE 580

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y LL    T+G+FQLES GMR  L  ++P+  ED+IA+++LYRPGP+  +  Y  RK 
Sbjct: 581  KVYELLQKGETIGVFQLESRGMRNLLRDIKPEKFEDLIAVLALYRPGPLGRLESYIKRKR 640

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+EK+  +HP ++P+L ET GVIIYQEQVM+IA  L+G++L +ADVLRRAMGKK  E M+
Sbjct: 641  GEEKVEYMHPALEPILAETYGVIIYQEQVMEIAHRLAGFTLGQADVLRRAMGKKKPEVME 700

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +Q+  F+ GA + GI + +A+ IFE +AKFA+YGFNKSH+AAYA +S+QTA++K +YP E
Sbjct: 701  EQRGIFVKGAVERGIPENVAIEIFEDMAKFAEYGFNKSHSAAYAFVSFQTAYLKAYYPKE 760

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            ++A+ +T   ++  K+ K+  +A++  I+I+PP VN   VDF V    I + L+AIK VG
Sbjct: 761  YMASLLTSVKNSTTKLSKYIAEAKRIGIKILPPDVNESVVDFTVTPQGIRFGLSAIKNVG 820

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
             + A  I+E  +   F S+ DF  R+ SK +N+R LESL+ +GA D FGYSR  LL+++D
Sbjct: 821  ESVAEAIVEERSRGRFKSIFDFIKRLSSKVINKRALESLIKSGAFDSFGYSRRALLENID 880

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             I + AQ V K       ++   E     + I        +     E E+ +LGFY S  
Sbjct: 881  KILESAQ-VMKRAHIGQVSLIDLESLPQEEIIN--NMPEFSIDEILEMEKEMLGFYVSYD 937

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P +  + I  K+     ++ V    G+ + +  ++ + ++   RK  ++ + T  +   E
Sbjct: 938  PQEELRKISEKLFDYTIDDLVEVESGSQVIVPGILKNVREVIDRKNQKMLFATLEDFTGE 997

Query: 1027 YEANFF 1032
             E   F
Sbjct: 998  AEITVF 1003


>gi|125973779|ref|YP_001037689.1| DNA polymerase III DnaE [Clostridium thermocellum ATCC 27405]
 gi|281417936|ref|ZP_06248956.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
 gi|125714004|gb|ABN52496.1| DNA polymerase III catalytic subunit, DnaE type [Clostridium
            thermocellum ATCC 27405]
 gi|281409338|gb|EFB39596.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
          Length = 1181

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1068 (35%), Positives = 601/1068 (56%), Gaps = 62/1068 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA  + +++ +       +IAITD   ++  ++F ++A   GI+PI
Sbjct: 5    FVHLHVHTEYSLLDGANRIKDLIRRTKELGMDSIAITDHGVMYGVVDFYKEAVNNGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++               +       +VLL     GY+ L+++VS  +  +      R
Sbjct: 65   LGCEIYTAKGSRFDKQGGWDSDPG---HMVLLAKNNTGYKNLMKIVSIGFT-EGFYYKPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            + +  L++  +EGLI ++   SG I +A   N+ + A++  L    +FG D  Y+ LQ +
Sbjct: 121  VDMEVLEKY-SEGLIAMSACLSGDIPKAILNNNYEKAKELALKLNSIFGQDNFYLELQMN 179

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     Q+++L+    +PLVATN++ +L  ED  AH++L+ +     ++ +DR R 
Sbjct: 180  GIEEQNIVNQQLIKLSRETGIPLVATNDAHYLRREDARAHEILLCIQTGKSINDEDRMRF 239

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + D Y+K+  EM+S+F ++PEA+ NTV IA  C+  L+ +   LP+F   +     K+ 
Sbjct: 240  SSDDFYIKSPEEMISLFRNIPEAISNTVRIADMCNVELEFNKLHLPKFDVPDG----KDP 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     G E    +         ++   RL++EL+VI +M +  YFLIV+DFI++A
Sbjct: 296  FEYLRALCYEGFERIYGKDNRD-----EEKINRLEYELSVIKQMGYVDYFLIVSDFIRYA 350

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+  I VGPGRGS AGS  AY L IT+IDPL+++LLFERFLNP+R+SMPD DIDFC +RR
Sbjct: 351  KEKGIMVGPGRGSAAGSFVAYCLGITNIDPLKYNLLFERFLNPERISMPDIDIDFCFERR 410

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RVAQIITFG++ A+A +RDVGRAL +PY +VD + K+IP      +
Sbjct: 411  QEVIDYVVEKYGKDRVAQIITFGTMAARAVIRDVGRALDIPYGEVDAIAKMIPFQIGMSI 470

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   R+    D  V  L++ ++ LEG+ RHASTHAAG+VI   PL++ VP+ R
Sbjct: 471  E-KAMELNPELRQRYNDDERVKELIDTAKLLEGMPRHASTHAAGVVISREPLTEYVPLQR 529

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D   TQF M  +E+ GL+K DFLGL+TLT+++ ++  + +   + V +  +  DD 
Sbjct: 530  S--EDSITTQFPMGILEELGLLKMDFLGLRTLTVIRDAVALIKKNHNIDVKIDELQMDDP 587

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              + L+    T G+FQLES+GM Q ++ +QP  +EDIIA +SLYRPGP+D I  Y   KN
Sbjct: 588  NVFKLIGEGRTAGVFQLESAGMTQFMKELQPASLEDIIAGISLYRPGPMDQIPRYLRNKN 647

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E +   HPL++ +L  T G ++YQEQVMQI + L+GYS+  +D++RRAM KK    M+
Sbjct: 648  NPELVKYDHPLLENILNVTYGCMVYQEQVMQIVRDLAGYSMGRSDLVRRAMAKKKVSVME 707

Query: 727  KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI             GA +NG+ +  A  IF+ +  FA Y FNKSHAAAYAVI+Y
Sbjct: 708  QERKNFIYGIDDDNGNIIVKGAVRNGVDEETANKIFDEMMDFASYAFNKSHAAAYAVIAY 767

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTAW+K +YPVEF+AA +   M + +KI ++  + R+  I+++PP +N   V F V + +
Sbjct: 768  QTAWLKCYYPVEFIAALLNSFMGSSDKISQYVHECRKLGIEVLPPDINESDVRFTVVNGK 827

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + LAA+K VG    R I++    +  + S  +F  RVD K +N+R +ESL+ +GA D 
Sbjct: 828  IRFGLAAVKNVGENAVRSIIDERNINGNYKSFRNFLERVDGKDVNKRCIESLIKSGAFDS 887

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF------------SDKITLE 941
             G  R +L+ + + + +      K       +IF     T              D+    
Sbjct: 888  MGVYRSRLMNAYEKMMEGISSQRKKSMEGQLSIFDMALNTEDGKKDEKHQLYPEDEDIYP 947

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------------- 986
                 +  +    E+ +LG Y SGHPL  ++    ++     ++                
Sbjct: 948  DIPEYSQKILLSMEKEMLGLYISGHPLSEFEKEFSEVVTLYSKDMVSDADENGEVITVEG 1007

Query: 987  -VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  G  + +  ++ S++ K T+  + + +VT  +     E   FP
Sbjct: 1008 NKGLKDGMTVTVGGIITSRKTKTTKNNNLMAFVTLEDLYGTMEIIVFP 1055


>gi|315648837|ref|ZP_07901932.1| DNA polymerase III, alpha subunit [Paenibacillus vortex V453]
 gi|315275805|gb|EFU39157.1| DNA polymerase III, alpha subunit [Paenibacillus vortex V453]
          Length = 1143

 Score =  834 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1046 (38%), Positives = 608/1046 (58%), Gaps = 32/1046 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
             SFVHL VHS YSLL+GA  + +++ + AA    ++A+TD   ++ A+ F +   A GI+
Sbjct: 2    SSFVHLHVHSEYSLLDGAARIGDLVREAAALGMKSLALTDHGVMYGAIPFYKACLAQGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC+  I      +   +G      +  ++LL     GY+ L++L S  +L +     
Sbjct: 62   PIIGCEAYITAGSRKE---RGSRKDQPIYHLILLAKNEVGYRNLMKLSSIGHL-EGYHYR 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI +  L     EG+I L+    G + +         A+   L ++ +FGD  Y+ LQ 
Sbjct: 118  PRIDMEALAA-HHEGIICLSACLGGEVPQHLLHGREAEAKAAALRYQAIFGDDYYLELQD 176

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ R   Q++ L+    +PLVATN+  +L+EED E  DVL+ +     V  +DR +
Sbjct: 177  HGIPEQKRVNPQLIALSRETGIPLVATNDVHYLTEEDAEVQDVLICIGTGKTVEDEDRLQ 236

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T   YLK+ SEM  ++  +PEA++NT +IA +C+  L+    ILP +         K 
Sbjct: 237  IQTNQLYLKSGSEMERLYPHVPEAIQNTAKIADQCNLELEFGKSILPEYSS---LPEGKN 293

Query: 307  EENELRNKAVAG-LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                LR   + G  E               +  QRL++EL VI  M FS YFLIV DFI 
Sbjct: 294  AAEYLRELCLNGLQERYGITERWQDEALRSELEQRLNYELGVIENMGFSDYFLIVWDFIA 353

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A +  I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R++MPD DIDF  +
Sbjct: 354  YAHRQGIAVGPGRGSSAGSLVAYTLQITNVDPMKYKLLFERFLNPERITMPDIDIDFSDE 413

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI YV +KYG E VAQIITFG++ A+AA+RDVGRAL +P+  VD+  KLIPN    
Sbjct: 414  RRDEVIDYVVDKYGKEHVAQIITFGTMAARAAVRDVGRALNVPFGDVDKAAKLIPNHLGI 473

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+    + +E     P V  L++++ K+EG+ RHASTHAAGIVI   PL+  VP+
Sbjct: 474  SI-AKAMEQSPQLKEQYETRPKVRELIDMAMKVEGMPRHASTHAAGIVISRDPLTDAVPL 532

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
              +      +TQ++M+ +E  GL+K DFLGL+TL++++++L ++ +  G  +D   IP +
Sbjct: 533  Q-EGSEKTALTQYSMENLESVGLLKMDFLGLRTLSIIERTLKWIQELTGGALDFEQIPDN 591

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY +L    T G+FQLES+G+R+ L+ ++P   EDI+++V+LYRPGP++ I  +   
Sbjct: 592  DGNTYEMLGRGETTGVFQLESAGVRRVLKDLKPSAFEDIVSVVALYRPGPMEFIPRFIQV 651

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+      H  + P+L +T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E 
Sbjct: 652  KHGQIDPEYPHEDLIPILGDTYGIIVYQEQIMQIASTMAGFSLGEADLLRRAVSKKKREV 711

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D+++  F+SG+ K G S+  A  +++++ +FA+YGF ++HAAAY V+++QTA++K HYP
Sbjct: 712  LDRERSHFVSGSLKLGYSEDEANRVYDMIVRFANYGFPRAHAAAYGVLAFQTAYLKAHYP 771

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------------- 831
            V F+A+ +T  M +  K+ ++  +AR+ +I++MPP VN     F                
Sbjct: 772  VPFMASMLTAVMGSHRKVAEYVLEARRIDIEVMPPDVNESGTYFTPVVSQSESGSLDEGS 831

Query: 832  ----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                +  I + LAAIK VGT    +I+E   +KPF+SL DFC RVD +  N+RV+ESL+ 
Sbjct: 832  HHFTEGGIRFGLAAIKNVGTQAVENIVEIRREKPFESLLDFCRRVDLRVCNKRVIESLIQ 891

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGA D     R QL+  LD   + A    K R +    +F   + T  D I         
Sbjct: 892  AGAFDSLPGHRSQLVAMLDETVEAAVKWRKERDDLQIQLFDFVEATNWD-IEYPDIPPYT 950

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +  + E E+ +LG Y SGHPLD Y+  L + G     +       +   +A MVV+ +  
Sbjct: 951  AGQQLEFERELLGMYLSGHPLDGYEDTLTESGADRLMDLHEAADESMAAVAGMVVTLKTI 1010

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T++G  + ++   +  +  E   FP
Sbjct: 1011 TTKQGKAMAFMECEDQIERCEVVLFP 1036


>gi|302389432|ref|YP_003825253.1| DNA polymerase III catalytic subunit, DnaE type [Thermosediminibacter
            oceani DSM 16646]
 gi|302200060|gb|ADL07630.1| DNA polymerase III catalytic subunit, DnaE type [Thermosediminibacter
            oceani DSM 16646]
          Length = 1145

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1034 (36%), Positives = 595/1034 (57%), Gaps = 29/1034 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH++YSLL+GA  ++ +  +       A+AITD   ++  ++F +   A G++P
Sbjct: 3    DFVHLHVHTNYSLLDGACEISKLAKRAKELGMNAMAITDHGVMYGIIDFYKTMKAEGVKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +                  +VLL     GY+ L++LVS  +L +      
Sbjct: 63   IIGCEVYVAKRSMADRQPG---IDDDQYHLVLLAENETGYKNLVKLVSLGFL-EGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L++  ++GLI L+   +G I         + A++      ++FG    ++ LQ 
Sbjct: 119  RVDKEVLKK-HSQGLIALSACLAGEIPYFLENGEYEKAKEAACELNEIFGKGNFFLELQD 177

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ R  + + +L+    +PLVATN+  ++ + D   HD ++ +     V  +DR +
Sbjct: 178  HGIPEQKRVNANLCRLSKETGIPLVATNDVHYILKSDEPVHDAMLCIQTGKTVKDEDRLK 237

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  YLK++ EM  +FS +PEALENTV IA+RC+  L      LP F   +       
Sbjct: 238  FNSAELYLKSQEEMWRLFSHIPEALENTVMIAQRCNVELDFGRIHLPHFEVPQGF----T 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +++ L      GL           G    + + RLD+EL+VI RM +S YFLIV DF+ +
Sbjct: 294  QDSYLEKLCYEGL-------VERYGRITPEIKARLDYELDVIKRMGYSSYFLIVWDFVNF 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+KN I VGPGRGS AGS+ AY L IT++DPLR++LLFERFLNP+R++MPD D+DFC +R
Sbjct: 347  ARKNGIMVGPGRGSAAGSLVAYCLHITNVDPLRYNLLFERFLNPERVTMPDIDVDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RVAQI TFG++ A+AA+RDVGR L  PY +VD + K++P +P   
Sbjct: 407  RQEVIDYVVRKYGEDRVAQIGTFGTMAARAAIRDVGRVLGYPYGEVDTVAKMVPMEPGMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +    +  +   ++    +  + RL++ ++ LEG  RHASTHAAG+VI   PL +LVP++
Sbjct: 467  IEKA-LVLNPELKKLYDENERIKRLIDTAKGLEGFPRHASTHAAGVVISSEPLVELVPLH 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            +   S++    F M  +E+ GL+K DFLGL+TLT+++ +L  + Q RG+ V L  +P DD
Sbjct: 526  KVGDSNVSTQ-FTMTALEELGLLKMDFLGLRTLTVIRDALGLIEQTRGISVVLDELPLDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNN 663
             + Y LL+   T G+FQLESSGMR  L  ++P+  EDIIA++ LYRPGP+ +     +  
Sbjct: 585  EKVYDLLSRGETTGVFQLESSGMRNLLRELRPERFEDIIAVIGLYRPGPLGSGAADEFIK 644

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             KN +  I  +HP + P+L+ET G+I+YQEQVM+IAQ L+G++L++AD+LR+AMGKK + 
Sbjct: 645  NKNNQGSIKYLHPRLKPILEETYGIILYQEQVMKIAQDLAGFTLAQADILRKAMGKKQQS 704

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M+ Q+  FI G  +NGI +  A NIFE ++ FA YGFNKSHAAAYA+I+YQTA++K H+
Sbjct: 705  VMEAQRAAFIRGCVENGIDEETAANIFEEISYFAGYGFNKSHAAAYAMIAYQTAYLKAHF 764

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF+AA +T    N +K+ ++  + R   I+++PP +N     F     +I + L A+K
Sbjct: 765  PVEFMAALLTSVRHNTDKVAQYIAECRHMGIEVLPPDINESFEVFTAVSGKIRFGLTAVK 824

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG   A+ I++       F S  DFC ++D  ++N++ +ESL+ +GA D  G  R QLL
Sbjct: 825  NVGEGMAKAIIKCRDEKGRFVSFSDFCEKLDQTEINKKAVESLIKSGAFDSLGARRSQLL 884

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
            +  +++    Q  +K +     ++F   +     +  L        +     E+ VLG Y
Sbjct: 885  KVYEDVLNRVQKKQKQQGKNQLSLFEMIRVDDVVEDELPDIPEYPENELLAMEKEVLGLY 944

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVAT----IRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             SGHPL  +K +L K      ++           + + +  ++   + K T+    + ++
Sbjct: 945  LSGHPLREFKDLLEKTTTLCSKDLADEEKEFKDNSAVVVGGIISEIKLKSTKDNKLMAFI 1004

Query: 1019 TFSEPAKEYEANFF 1032
            T  +     E   F
Sbjct: 1005 TLEDLTGVMEVIAF 1018


>gi|94263380|ref|ZP_01287194.1| DNA polymerase III, alpha subunit [delta proteobacterium MLMS-1]
 gi|93456216|gb|EAT06350.1| DNA polymerase III, alpha subunit [delta proteobacterium MLMS-1]
          Length = 1174

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1036 (41%), Positives = 618/1036 (59%), Gaps = 17/1036 (1%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              FVHL VH+ YS+L+GA+ L+ +  K       A+AITD   +F ALEF  KA  AGI+
Sbjct: 2    SDFVHLHVHTQYSMLDGAIRLDRLFAKCREYGMEAVAITDHGAMFGALEFYVKAKKAGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC+  I        + +          ++LL     GYQ L++L +   L +     
Sbjct: 62   PIIGCEFYIAPDSRRDKSAKSAGAAAHH--LMLLAMDQTGYQNLMKLATIAQL-EGFHYK 118

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI L  L +   EGLI +T    G +           A        +LF  RLY+ +Q 
Sbjct: 119  PRIDLEVLAD-HREGLIAMTACLHGKVPSLLVKGDKAGARAEAKRLHELFPGRLYLEMQE 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            ++  ++      + +LA   ELPLVATN+  +L  E+ +AH+VL+ +     +  +DR R
Sbjct: 178  NQIPEQTTVNEGLKELAAELELPLVATNDCHYLDREEAKAHEVLLCIQTGKTMDSQDRFR 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + + K+ +EM + F+  P+AL  TVEIA+RC+  L + +   P F     D +   
Sbjct: 238  FATDELFFKSPAEMKAAFAHSPQALAATVEIAQRCNLELDLESHHFPDFPVPTGDTLASL 297

Query: 307  EENELRN-KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E E R   A    E+R  QG        + YRQRL+ E++VI +M F GYFLIVADFI 
Sbjct: 298  FEREARAGLAQRLTEMRDKQGLTVGAELEEQYRQRLEHEIDVINQMGFPGYFLIVADFIN 357

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK   IPVGPGRGSGAGS+ AYA+ ITD+DP+   L+FERFLN +R SMPDFD+DFCQ+
Sbjct: 358  WAKDQQIPVGPGRGSGAGSLVAYAMRITDVDPIPHGLIFERFLNIERKSMPDFDVDFCQE 417

Query: 426  RRDEVIRYVQNKY-GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            RR EVI YVQ+KY G   V QI+T+GS++AKA +RDVGRAL M + + DR+ KLIP++  
Sbjct: 418  RRGEVIDYVQHKYGGQSHVVQIVTYGSMKAKAVVRDVGRALGMSFGEADRIAKLIPDELN 477

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +AI  + +F+E    +P V  LL +++ LEGL RH S HAAG+VI  RP+ + +P
Sbjct: 478  ITLD-KAIDKEPKFKELMKREPQVAELLNVAKVLEGLNRHTSIHAAGVVISPRPMVEYLP 536

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF 603
            + +       +TQ++MK  E  GLIKFDFLGLKTLT++ ++   +      +VD++ IP 
Sbjct: 537  LCKGP-KGEVLTQYDMKHTEMTGLIKFDFLGLKTLTVIDRACKLIKADLDHEVDIAAIPM 595

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661
            DD +T+ LL     LG+FQLESSGMR  L  M+P+   D+IALV+LYRPGP+++ +   +
Sbjct: 596  DDAKTFDLLCKGDALGVFQLESSGMRSLLMKMKPEQFSDLIALVALYRPGPLESGMVEDF 655

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             N K+G+         ++P+LKET GVI+YQEQVM+IA +L+GYSL +AD LRRAMGKKI
Sbjct: 656  VNTKHGRMVAKYPLAQLEPILKETYGVIVYQEQVMKIANVLAGYSLGDADNLRRAMGKKI 715

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E M+ +K +F++G + NGI    A  IF+L+AKFA YGFNKSH+AAYA+I+YQTAW+K 
Sbjct: 716  PEVMEAEKGKFMAGCADNGIDPKKAEYIFDLVAKFAGYGFNKSHSAAYALIAYQTAWLKA 775

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP +F+AA ++ +M N +K+ ++  + R+  I+++PP +N    DF V D+RI + LAA
Sbjct: 776  HYPSQFMAALLSCDMGNTDKVVRYINECREHEIEVLPPDINESFRDFTVIDDRIRFGLAA 835

Query: 842  IKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +K VG      I+E    D P+ SL DFC RVD +K+NRRV+ESL+ AGA D  G  R Q
Sbjct: 836  VKNVGGAALDSIIEVRETDGPYQSLSDFCGRVDGRKVNRRVIESLIKAGAFDSLGAKRAQ 895

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK---ITLEKFSVENSSVRFENEQR 957
            L   LD     AQ  +++R +   ++FA      + +   I L + +  +   R   E+ 
Sbjct: 896  LFAILDQAMDQAQATQRDRQSGQISLFAAMPAEQAAQAQNIELPEIAEWDEKQRLLLEKE 955

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             +GFY +GHPLD Y+  L  +      +         +R+  ++   +  +++KG  + +
Sbjct: 956  TVGFYLTGHPLDKYRRELAAVVDTDLHDLADWNEQQPVRVGGLIRHCKPHRSKKGDAMAF 1015

Query: 1018 VTFSEPAKEYEANFFP 1033
            +T  +     E   FP
Sbjct: 1016 LTLEDTLASAEVVIFP 1031


>gi|256004510|ref|ZP_05429489.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 2360]
 gi|255991515|gb|EEU01618.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 2360]
 gi|316940028|gb|ADU74062.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 1313]
          Length = 1181

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1068 (35%), Positives = 600/1068 (56%), Gaps = 62/1068 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA  + +++ +       +IAITD   ++  ++F ++A   GI+PI
Sbjct: 5    FVHLHVHTEYSLLDGANRIKDLIRRTKELGMDSIAITDHGVMYGVVDFYKEAVNNGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++               +       +VLL     GY+ L+++VS  +  +      R
Sbjct: 65   LGCEIYTAKGSRFDKQGGWDSDPG---HMVLLAKNNTGYKNLMKIVSIGFT-EGFYYKPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            + +  L++  +EGLI ++   SG I +A   N+ + A++  L    +FG D  Y+ LQ +
Sbjct: 121  VDMEVLEKY-SEGLIAMSACLSGDIPKAILNNNYEKAKELALKLNSIFGQDNFYLELQMN 179

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     Q+++L+    +PLVATN++ +L  ED  AH++L+ +     ++ +DR R 
Sbjct: 180  GIEEQNIVNQQLIKLSRETGIPLVATNDAHYLRREDARAHEILLCIQTGKSINDEDRMRF 239

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + D Y+K+  EM+S+F ++PEA+ NTV IA  C+  L+ +   LP+F   +     K+ 
Sbjct: 240  SSDDFYIKSPEEMISLFRNIPEAISNTVRIADMCNVELEFNKLHLPKFDVPDG----KDP 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     G E    +         ++   RL++EL+VI +M +  YFLIV+DFI++A
Sbjct: 296  FEYLRALCYEGFERIYGKDNRD-----EEKINRLEYELSVIKQMGYVDYFLIVSDFIRYA 350

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+  I VGPGRGS AGS  AY L IT+IDPL+++LLFERFLNP+R+SMPD DIDFC +RR
Sbjct: 351  KEKGIMVGPGRGSAAGSFVAYCLGITNIDPLKYNLLFERFLNPERISMPDIDIDFCFERR 410

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RVAQIITFG++ A+A +RDVGRAL + Y +VD + K+IP      +
Sbjct: 411  QEVIDYVVEKYGKDRVAQIITFGTMAARAVIRDVGRALDISYGEVDAIAKMIPFQIGMSI 470

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   R+    D  V  L++ ++ LEG+ RHASTHAAG+VI   PL++ VP+ R
Sbjct: 471  E-KAMELNPELRQRYNDDERVKELIDTAKLLEGMPRHASTHAAGVVISREPLTEYVPLQR 529

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D   TQF M  +E+ GL+K DFLGL+TLT+++ ++  + +   + V +  +  DD 
Sbjct: 530  S--EDSITTQFPMGILEELGLLKMDFLGLRTLTVIRDAVALIKKNHNIDVKIDELQMDDP 587

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              + L+    T G+FQLES+GM Q ++ +QP  +EDIIA +SLYRPGP+D I  Y   KN
Sbjct: 588  NVFKLIGEGRTAGVFQLESAGMTQFMKELQPASLEDIIAGISLYRPGPMDQIPRYLRNKN 647

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E +   HPL++ +L  T G ++YQEQVMQI + L+GYS+  +D++RRAM KK    M+
Sbjct: 648  NPELVKYDHPLLENILNVTYGCMVYQEQVMQIVRDLAGYSMGRSDLVRRAMAKKKVSIME 707

Query: 727  KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI             GA +NG+ +  A  IF+ +  FA Y FNKSHAAAYAVI+Y
Sbjct: 708  QERKNFIYGIDDDNGNIIVKGAVRNGVDEETANKIFDEMMDFASYAFNKSHAAAYAVIAY 767

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTAW+K +YPVEF+AA +   M + +KI ++  + R+  I+++PP +N   V F V + +
Sbjct: 768  QTAWLKCYYPVEFIAALLNSFMGSSDKISQYVHECRKLGIEVLPPDINESDVRFTVVNGK 827

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + LAA+K VG    R I++    +  + S  +F  RVD K +N+R +ESL+ +GA D 
Sbjct: 828  IRFGLAAVKNVGENAVRSIIDERNINGNYKSFRNFLERVDGKDVNKRCIESLIKSGAFDS 887

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF------------SDKITLE 941
             G  R +L+ + + + +      K       +IF     T              D+    
Sbjct: 888  MGVYRSRLMNAYEKMMEGISSQRKKSMEGQLSIFDMALNTEDGKKDEKHQLYPEDEDIYP 947

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------------- 986
                 +  +    E+ +LG Y SGHPL  ++    ++     ++                
Sbjct: 948  DIPEYSQKILLSMEKEMLGLYISGHPLSEFEKEFSEVVTLYSKDMVSDADENGEVITVEG 1007

Query: 987  -VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  G  + +  ++ S++ K T+  + + +VT  +     E   FP
Sbjct: 1008 NKGLKDGMTVTVGGIITSRKTKTTKNNNLMAFVTLEDLYGTMEIIVFP 1055


>gi|15888619|ref|NP_354300.1| DNA polymerase III subunit alpha [Agrobacterium tumefaciens str. C58]
 gi|15156343|gb|AAK87085.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58]
          Length = 1167

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 644/1033 (62%), Positives = 799/1033 (77%), Gaps = 7/1033 (0%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K+P FVHL+VHS+YSLLEGAL L  I+ K   D QPAIAITDTNNLF ALEFS+KA   G
Sbjct: 16   KTPGFVHLRVHSAYSLLEGALPLKKIMSKAVGDGQPAIAITDTNNLFVALEFSEKARDEG 75

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +QPIIGCQL IDMQD  +      +    +P+IVLL + AEGY+RL++LVSR YL  +G 
Sbjct: 76   LQPIIGCQLSIDMQDAAEDRRNHNSHLQKLPAIVLLAANAEGYERLVDLVSRAYLDGEGG 135

Query: 127  -QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
              SV I  +WL+E    GLI LTG S GP+D A     +  A++RLLT K LFGDRLY+ 
Sbjct: 136  SHSVHITRAWLEEASNAGLIALTGASGGPVDMALKEGHAAQAKERLLTLKSLFGDRLYIE 195

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            LQR  GYDR  E +++ LAY H++PLVATN + F S+ DYEAHD LMAVAH+ +VS   R
Sbjct: 196  LQRQSGYDRSHERRLIGLAYEHDIPLVATNEAFFPSKADYEAHDALMAVAHNAIVSDDSR 255

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R+TPDHYLK+R EM ++F+DLPEALENTVEIA RCS++L+   PILPRF     D    
Sbjct: 256  FRLTPDHYLKSRDEMTALFADLPEALENTVEIALRCSYVLKKRGPILPRFTGASDDPEAA 315

Query: 306  EEENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            E      LR +AV GL+ RL+   +A GY  QDYR+RLDFEL VI+RMKF GYFLIVADF
Sbjct: 316  ERAETEELRRQAVEGLDQRLSALGMAPGYTEQDYRERLDFELGVISRMKFPGYFLIVADF 375

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK+ +IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFC
Sbjct: 376  IKWAKQQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFC 435

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QDRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+P
Sbjct: 436  QDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNP 495

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A+P    +AI ++ R +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+L
Sbjct: 496  ANPTPLSKAIEEEPRLQEEADKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKL 555

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VPMYRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L+ ++DF+A+RG+KVDL+ IP
Sbjct: 556  VPMYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVDFVAKRGIKVDLAAIP 615

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN
Sbjct: 616  LEDAKTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYN 675

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G+E++ SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK
Sbjct: 676  ARKHGEEELESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIK 735

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            EEMD+Q+ERF+ GA KNG+SK  A  IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK H
Sbjct: 736  EEMDQQRERFVDGAIKNGVSKPQANTIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAH 795

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YPVEFLAASMTL+M N EK+  F QDA +  I+++ PSV T    F+ G+NRIYYSLAAI
Sbjct: 796  YPVEFLAASMTLDMANTEKLNDFRQDAGRLGIEVVAPSVQTSFRQFETGENRIYYSLAAI 855

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KGVG     HI++   +KPF SLEDFC R+D K++NRRVLESL+ AGA DCFG  R +L+
Sbjct: 856  KGVGEGAVEHIVQVRGEKPFTSLEDFCLRIDPKQINRRVLESLINAGAFDCFGRDRAELI 915

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              LD I  YAQ  + NRT    ++F    GT  +K+ L  F     S +   E +VLGFY
Sbjct: 916  GGLDRIIGYAQMAQNNRTIGQSDMFGSGGGTGPEKLILPAFQSWLPSEKLIREYQVLGFY 975

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRG--NNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
             + HPLD Y+P+L K+ ++ + +  A ++   + + RLA  V  KQ++KTR G+++G VT
Sbjct: 976  LTAHPLDTYRPLLEKLRVQNFADFSAAVKQGASTVGRLAGTVTGKQERKTRTGNKMGIVT 1035

Query: 1020 FSEPAKEYEANFF 1032
            FS+ + +YEA  F
Sbjct: 1036 FSDASGQYEAVLF 1048


>gi|225180853|ref|ZP_03734301.1| DNA polymerase III, alpha subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225168334|gb|EEG77137.1| DNA polymerase III, alpha subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 1144

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1039 (39%), Positives = 604/1039 (58%), Gaps = 30/1039 (2%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S +FVHL VH+ YSLL+GA  + N + + A    PA+AITD   ++  ++F + A  AGI
Sbjct: 3    SSNFVHLHVHTEYSLLDGASKIKNTVARAAELDMPALAITDHGVMYGVIDFYKAAKDAGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +P+IGC++ +  +       +          +VLL     GY  L+ELVSR +  +    
Sbjct: 63   KPVIGCEVYVAPRTRHD---RDSRRDSKQHHLVLLAQDQTGYANLMELVSRGF-SEGFYY 118

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              R+    LQ    +GL +L+   +G I  A      + A K +  +K+ FG +  ++ L
Sbjct: 119  KPRVDHELLQRY-NKGLTVLSACLAGEIPVALLEGRQEDARKLVSFYKETFGSENFFLEL 177

Query: 187  QRHRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   ++   S  ++ LA   + P+V +N+  +   ED  AHD L+ +     +  ++R
Sbjct: 178  QDHGLQEQKELSPLLIDLAKDTQTPMVVSNDLHYTHREDAHAHDALLCIQTGKTLDDENR 237

Query: 246  PRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R +  + YLK   EM S++ DLPE L+NTV IA  C+         LP +      D  
Sbjct: 238  MRFSTEEFYLKTAEEMGSLYPDLPELLDNTVHIAENCNVDFDFSTTYLPGYEVPPAHD-- 295

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              E + LR   V G + R  +            ++RLD+EL+VIA+M +  YFLI  DF+
Sbjct: 296  --ERSYLRELCVQGTKERYGE------ELPPHVQERLDYELSVIAQMGYDSYFLITWDFV 347

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A +N I VGPGRGS AGS+ AYAL IT+IDPL++ LLFERFLNP+R++MPD DIDFC 
Sbjct: 348  NYAHENGILVGPGRGSAAGSLVAYALGITNIDPLKYGLLFERFLNPERVTMPDIDIDFCY 407

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + R++VI YV  KYG E VAQIITFG++ A+AA+RDVGR L +PY+ VDR+ KLIP +  
Sbjct: 408  ENREKVIDYVVEKYGEECVAQIITFGTMAARAAVRDVGRVLNVPYADVDRIAKLIPAELN 467

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +    +      +E    D  + +LL++S  +EGL RHASTHAAG+VI   PL   VP
Sbjct: 468  ISI-ADGLEKSPDLKELYDKDEKIRQLLDLSMAVEGLPRHASTHAAGVVISKDPLVNYVP 526

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            + +     + VTQF M  +E+ GL+K DFLGL+TLT++ +++  + +  GV+VDL+ +P 
Sbjct: 527  LQKAGEDGM-VTQFPMGTLEELGLLKMDFLGLRTLTIMGEAVRLIKKSTGVEVDLNELPL 585

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  T+H+L+   T GIFQLES GMR  L  M+PD  EDIIA+V+LYRPGP++ I  +  
Sbjct: 586  DDKNTFHMLSQGDTSGIFQLESGGMRGILREMKPDVFEDIIAVVALYRPGPMEQIPTFIQ 645

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             K+G   I  +H  ++P+LKET G+++YQEQ+MQ+A  ++G+SL E+D+LRRA+GKK  E
Sbjct: 646  SKHGHIPIKYLHSDLEPILKETYGIMVYQEQIMQVASAMAGFSLGESDLLRRAIGKKKLE 705

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +++Q+E F++G    G  K +A  +++L+ KFA YGFNKSHAAAYA+++YQTA++K +Y
Sbjct: 706  VLNQQRELFVNGCVAKGHKKEMANELYDLIVKFASYGFNKSHAAAYALVAYQTAYLKANY 765

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAI 842
            P +F+AA +T  M   EK+  +  + +Q  I ++PP VN    +F V D + I Y +AA+
Sbjct: 766  PTQFMAAQLTGVMGTTEKVAGYIANCKQMGISVLPPDVNLSEKNFTVTDAKVIRYGMAAV 825

Query: 843  KGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K VG      I+ A  +   F SL DFC+RVD +  N++V+ESL+ AGA DC G +R QL
Sbjct: 826  KNVGLGAIESIIAARKEQGDFTSLRDFCARVDLRSCNKKVMESLIKAGAFDCLGANRNQL 885

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD------KITLEKFSVENSSVRFENE 955
            L  LD     AQ + K R N    +F   +    D      +  L          R   E
Sbjct: 886  LAILDETVSAAQTMHKERQNGQMCMFEVVEEDEEDCQWVNLQDDLPDIPAPLPRERLNME 945

Query: 956  QRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +  LG Y +GHPL+ Y+ +L     +   +         ++ +A M+   +   T+KG  
Sbjct: 946  KDTLGLYITGHPLEEYENVLNIYPDLARTDTLQKAPDNKSVVIAGMINGLKPIITKKGKP 1005

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + + T  + A   E   FP
Sbjct: 1006 MAFFTLEDLAGGLEVVVFP 1024


>gi|260887140|ref|ZP_05898403.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185]
 gi|260863202|gb|EEX77702.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185]
          Length = 1137

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1040 (36%), Positives = 598/1040 (57%), Gaps = 31/1040 (2%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
              + K P F HL VH+ YSLL+GA  +  ++ +       ++AITD   ++  ++F ++A
Sbjct: 5    AAMTKIP-FAHLHVHTCYSLLDGASRIPELIARTKELGMDSVAITDHGAMYGVIDFYKEA 63

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               GI+PIIGC+  +  +     T   +        ++LL    EGY+ L++LVS     
Sbjct: 64   KKQGIRPIIGCEAYLAPESRFDRT---EVRGTRYYHLILLAENDEGYRSLVKLVSLANT- 119

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181
            +      R+    L++   +GLI L+   +G I +A      + AEK +  +  +FG + 
Sbjct: 120  EGMYYKPRVDKDILRKYH-KGLICLSACVAGEIPQAILRGERERAEKLVEEYIDIFGREN 178

Query: 182  LYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             ++ +Q H   D     + V++LA    + LVATN+  ++ +ED EAHDVL+A+     V
Sbjct: 179  FFLEIQDHGIPDEKTAFAGVIELAEKFGVGLVATNDIHYVHKEDTEAHDVLLAIQTGKGV 238

Query: 241  SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                R R    + Y+++  EM  +F D PEAL NT +IA RC    +     LP F   E
Sbjct: 239  HDPTRMRYAEGEFYMRSPEEMQELFHDHPEALANTQKIAERCKVDFEFGHLHLPNFPLPE 298

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   ++  LR              ++         R+RLD+EL++I RM +  YFLI
Sbjct: 299  GM----TDDAYLRQLCEE-------NLSLRYEKITPAVRERLDYELSIIHRMGYDSYFLI 347

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI++A+   I VGPGRGS AGS+ AY L IT++DPL++ LLFERFLNP+R++MPD D
Sbjct: 348  VWDFIKYARGEGIAVGPGRGSAAGSIVAYLLGITNLDPLKYELLFERFLNPERVTMPDID 407

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC  RR+EVI YV+ +YG + VAQIITFG++ AK A+RDVGRAL+M Y+ VDR+ K +
Sbjct: 408  IDFCYIRREEVIDYVKRRYGADHVAQIITFGTMAAKGAIRDVGRALEMTYASVDRVAKAV 467

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P++    +    +AD   FR          RL++ ++ LEGL RH+STHAAG+VI   PL
Sbjct: 468  PSELGITLDRA-LADSQDFRSIYEESDETKRLIDFARDLEGLPRHSSTHAAGVVIARNPL 526

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
            +  VP+   V     VT+++   +E+ GL+K DFLGL+TLT++  +L  + + RGV +D+
Sbjct: 527  TDYVPVQ--VSDGTLVTEYDKDHVEELGLLKMDFLGLRTLTVIADALKNIKKSRGVTIDI 584

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P +D +T  +L    T  +FQ+ES+GM   ++ +QP   +D+I  V+LYRPGP+ + 
Sbjct: 585  DTMPLEDEKTAEMLCRGDTGAVFQMESAGMTNLVKDLQPKNFQDLIPTVALYRPGPLGSG 644

Query: 659  V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +   +   ++GK+K+  +HPL++P+LKET GV++YQEQVMQ+ Q+L+ ++L +AD+LRRA
Sbjct: 645  MVTDFIAGRHGKKKVTYLHPLLEPILKETFGVVLYQEQVMQVVQVLANFTLGQADILRRA 704

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  E +  Q+E ++ G  +NGI   +A  IF+LL  FADYGFNKSH+AAYA++++QT
Sbjct: 705  MGKKKHEVLMSQRETYMKGTRENGIDDALAEKIFDLLTHFADYGFNKSHSAAYALVAWQT 764

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K HYP EF+AA +T  MD  +K+  + +  R+  I+I+PP VN    +F V    I 
Sbjct: 765  AYLKAHYPQEFMAAMLTSIMDTNDKVGVYIELCRRMGIKILPPDVNASEANFSVDGAAIR 824

Query: 837  YSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            + LAA++ VG    + +     +   F SL DFC+RVD +  N+RVLESL+  GA D  G
Sbjct: 825  FGLAAVRNVGEAAIKSLAAVREEGGAFTSLLDFCTRVDMRTANKRVLESLIKCGAFDSLG 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R QLL  L+ +   A     +  +    +F       ++ + L      +S  R   E
Sbjct: 885  AHRSQLLAVLERVIDVAARKHADAASGQIGLFGEAAMQEAEDVALPDIDEADSVQRLAWE 944

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGS 1013
            +   GF+ +GHPLD ++  ++   +    + +   +     +R+  ++ S ++  T+KG 
Sbjct: 945  KENTGFFITGHPLDRHEKKIK--NLVPIGDILDGKKKERQLVRIGGLISSAKRIATKKGD 1002

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
             + ++   +     E   FP
Sbjct: 1003 TMCFLELEDYTHSVEVVVFP 1022


>gi|330839090|ref|YP_004413670.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185]
 gi|329746854|gb|AEC00211.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185]
          Length = 1131

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1038 (36%), Positives = 598/1038 (57%), Gaps = 31/1038 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  +  ++ +       ++AITD   ++  ++F ++A  
Sbjct: 1    MTKIP-FAHLHVHTCYSLLDGASRIPELIARTKELGMDSVAITDHGAMYGVIDFYKEAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIGC+  +  +     T   +        ++LL    EGY+ L++LVS     + 
Sbjct: 60   QGIRPIIGCEAYLAPESRFDRT---EVRGTRYYHLILLAENDEGYRSLVKLVSLANT-EG 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 R+    L++   +GLI L+   +G I +A      + AEK +  +  +FG +  +
Sbjct: 116  MYYKPRVDKDILRKYH-KGLICLSACVAGEIPQAILRGERERAEKLVEEYIDIFGRENFF 174

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H   D     + V++LA    + LVATN+  ++ +ED EAHDVL+A+     V  
Sbjct: 175  LEIQDHGIPDEKTAFAGVIELAEKFGVGLVATNDIHYVHKEDTEAHDVLLAIQTGKGVHD 234

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              R R    + Y+++  EM  +F D PEAL NT +IA RC    +     LP F   E  
Sbjct: 235  PTRMRYAEGEFYMRSPEEMQELFHDHPEALANTQKIAERCKVDFEFGHLHLPNFPLPEGM 294

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                 ++  LR              ++         R+RLD+EL++I RM +  YFLIV 
Sbjct: 295  ----TDDAYLRQLCEE-------NLSLRYEKITPAVRERLDYELSIIHRMGYDSYFLIVW 343

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++A+   I VGPGRGS AGS+ AY L IT++DPL++ LLFERFLNP+R++MPD DID
Sbjct: 344  DFIKYARGEGIAVGPGRGSAAGSIVAYLLGITNLDPLKYELLFERFLNPERVTMPDIDID 403

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC  RR+EVI YV+ +YG + VAQIITFG++ AK A+RDVGRAL+M Y+ VDR+ K +P+
Sbjct: 404  FCYIRREEVIDYVKRRYGADHVAQIITFGTMAAKGAIRDVGRALEMTYASVDRVAKAVPS 463

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +    +AD   FR          RL++ ++ LEGL RH+STHAAG+VI   PL+ 
Sbjct: 464  ELGITLDRA-LADSQDFRSIYEESDETKRLIDFARDLEGLPRHSSTHAAGVVIARNPLTD 522

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
             VP+   V     VT+++   +E+ GL+K DFLGL+TLT++  +L  + + RGV +D+  
Sbjct: 523  YVPVQ--VSDGTLVTEYDKDHVEELGLLKMDFLGLRTLTVIADALKNIKKSRGVTIDIDT 580

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV- 659
            +P +D +T  +L    T  +FQ+ES+GM   ++ +QP   +D+I  V+LYRPGP+ + + 
Sbjct: 581  MPLEDEKTAEMLCRGDTGAVFQMESAGMTNLVKDLQPKNFQDLIPTVALYRPGPLGSGMV 640

Query: 660  -VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   ++GK+K+  +HPL++P+LKET GV++YQEQVMQ+ Q+L+ ++L +AD+LRRAMG
Sbjct: 641  TDFIAGRHGKKKVTYLHPLLEPILKETFGVVLYQEQVMQVVQVLANFTLGQADILRRAMG 700

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  E +  Q+E ++ G  +NGI   +A  IF+LL  FADYGFNKSH+AAYA++++QTA+
Sbjct: 701  KKKHEVLMSQRETYMKGTRENGIDDALAEKIFDLLTHFADYGFNKSHSAAYALVAWQTAY 760

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K HYP EF+AA +T  MD  +K+  + +  R+  I+I+PP VN    +F V    I + 
Sbjct: 761  LKAHYPQEFMAAMLTSIMDTNDKVGVYIELCRRMGIKILPPDVNASEANFSVDGAAIRFG 820

Query: 839  LAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            LAA++ VG    + +     +   F SL DFC+RVD +  N+RVLESL+  GA D  G  
Sbjct: 821  LAAVRNVGEAAIKSLAAVREEGGAFTSLLDFCTRVDMRTANKRVLESLIKCGAFDSLGAH 880

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R QLL  L+ +   A     +  +    +F       ++ + L      +S  R   E+ 
Sbjct: 881  RSQLLAVLERVIDVAARKHADAASGQIGLFGEAAMQEAEDVALPDIDEADSVQRLAWEKE 940

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRI 1015
              GF+ +GHPLD ++  ++   +    + +   +     +R+  ++ S ++  T+KG  +
Sbjct: 941  NTGFFITGHPLDRHEKKIK--NLVPIGDILDGKKKERQLVRIGGLISSAKRIATKKGDTM 998

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             ++   +     E   FP
Sbjct: 999  CFLELEDYTHSVEVVVFP 1016


>gi|94267210|ref|ZP_01290812.1| DNA polymerase III, alpha subunit [delta proteobacterium MLMS-1]
 gi|93452086|gb|EAT02768.1| DNA polymerase III, alpha subunit [delta proteobacterium MLMS-1]
          Length = 1174

 Score =  829 bits (2142), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1036 (41%), Positives = 617/1036 (59%), Gaps = 17/1036 (1%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              FVHL VH+ YS+L+GA+ L+ +  K       A+AITD   +F ALEF  KA  AGI+
Sbjct: 2    SDFVHLHVHTQYSMLDGAIRLDRLFAKCREYGMEAVAITDHGAMFGALEFYVKAKKAGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC+  I        + +          ++LL     GYQ L++L +   L +     
Sbjct: 62   PIIGCEFYIAPDSRRDKSAKSAGAAAHH--LMLLAMDQTGYQNLMKLATIAQL-EGFHYK 118

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI L  L     EGLI +T    G +           A        +LF  RLY+ +Q 
Sbjct: 119  PRIDLEVLAA-HREGLIAMTACLHGKVPSLLVKGDKAGARAEAKRLHELFPGRLYLEMQE 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            ++  ++      + +LA   ELPLVATN+  +L  E+ +AH+VL+ +     ++ +DR R
Sbjct: 178  NQIPEQTTVNEGLKELAAELELPLVATNDCHYLDREEAKAHEVLLCIQTGKTMAAQDRFR 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + + K+ +EM + F+  P+AL  T EIA+RC+  L + +   P F     D +   
Sbjct: 238  FATDELFFKSPAEMKAAFAHSPQALAATAEIAQRCNLELDLESHHFPDFPVPTGDTLASL 297

Query: 307  EENELRN-KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E E R   A    E+R  QG        + YRQRL+ E++VI +M F GYFLIVADFI 
Sbjct: 298  FEREARAGLAQRLTEMRDKQGLTVGAELEEQYRQRLEHEIDVINQMGFPGYFLIVADFIN 357

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK   IPVGPGRGSGAGS+ AYA+ ITD+DP+   L+FERFLN +R SMPDFD+DFCQ+
Sbjct: 358  WAKDQQIPVGPGRGSGAGSLVAYAMRITDVDPIPHGLIFERFLNIERKSMPDFDVDFCQE 417

Query: 426  RRDEVIRYVQNKY-GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            RR EVI YVQ+KY G   V QI+T+GS++AKA +RDVGRAL M + + DR+ KLIP++  
Sbjct: 418  RRGEVIDYVQHKYGGQSHVVQIVTYGSMKAKAVVRDVGRALGMSFGEADRIAKLIPDELN 477

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +AI  + +F+E    +P V  LL +++ LEGL RH S HAAG+VI  RP+ + +P
Sbjct: 478  ITLD-KAIDKEPKFKELMKREPQVAELLNVAKVLEGLNRHTSIHAAGVVISPRPMVEYLP 536

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF 603
            + +       +TQ++MK  E  GLIKFDFLGLKTLT++ ++   +      +VD++ IP 
Sbjct: 537  LCKGP-KGEVLTQYDMKHTEMTGLIKFDFLGLKTLTVIDRACKLIKADLDHEVDIAAIPM 595

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661
            DD +T+ LL     LG+FQLESSGMR  L  M+P+   D+IALV+LYRPGP+++ +   +
Sbjct: 596  DDAKTFDLLCKGDALGVFQLESSGMRSLLMKMKPEQFSDLIALVALYRPGPLESGMVEDF 655

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             N K+G+         ++P+LKET GVI+YQEQVM+IA +L+GYSL +AD LRRAMGKKI
Sbjct: 656  VNTKHGRMVAKYPLAQLEPILKETYGVIVYQEQVMKIANVLAGYSLGDADNLRRAMGKKI 715

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E M+ +K +F++G + NGI    A  IF+L+AKFA YGFNKSH+AAYA+I+YQTAW+K 
Sbjct: 716  PEVMEAEKGKFMAGCADNGIDPKKAEYIFDLVAKFAGYGFNKSHSAAYALIAYQTAWLKA 775

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP +F+AA ++ +M N +K+ ++  + R+  I+++PP +N    DF V D+RI + LAA
Sbjct: 776  HYPSQFMAALLSCDMGNTDKVVRYINECREHEIEVLPPDINESFRDFTVIDDRIRFGLAA 835

Query: 842  IKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +K VG      I+E    D P+ SL DFC RVD +K+NRRV+ESL+ AGA D  G  R Q
Sbjct: 836  VKNVGGAALDSIIEVRETDGPYQSLSDFCGRVDGRKVNRRVIESLIKAGAFDSLGAKRAQ 895

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK---ITLEKFSVENSSVRFENEQR 957
            L   LD     AQ  +++R +   ++FA      + +   I L + +  +   R   E+ 
Sbjct: 896  LFAILDQAMDQAQATQRDRQSGQISLFAAMPAEQAAQAQNIELPEIAEWDEKQRLLLEKE 955

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             +GFY +GHPLD Y+  L  +      +         +R+  ++   +  +++KG  + +
Sbjct: 956  TVGFYLTGHPLDKYRRELSGVIDTDLHDLADWNEQQPVRVGGLIRHCKPHRSKKGDAMAF 1015

Query: 1018 VTFSEPAKEYEANFFP 1033
            +T  +     E   FP
Sbjct: 1016 LTLEDTLASAEVVIFP 1031


>gi|298291824|ref|YP_003693763.1| DNA polymerase III subunit alpha [Starkeya novella DSM 506]
 gi|296928335|gb|ADH89144.1| DNA polymerase III, alpha subunit [Starkeya novella DSM 506]
          Length = 1149

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 559/1036 (53%), Positives = 741/1036 (71%), Gaps = 18/1036 (1%)

Query: 2    TQYLEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
             Q + ++ + FVHL VHSS+SLLEGAL++  + +    D+QPAIA+TDT NLF ALEFS+
Sbjct: 3    QQDMTQADAGFVHLHVHSSFSLLEGALTIGKLAELAKKDRQPAIALTDTGNLFGALEFSE 62

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            K   +GIQPI+GC L +D          G       P +VLL  + EG++ L+ELVSR +
Sbjct: 63   KMAGSGIQPILGCALSVDFPGPAPRGPAG----QQRPRVVLLAMSEEGWKNLMELVSRSF 118

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            L      +  I L WL E  T GLI LTGG SGPIDRA    S   AE+RL T  +LFGD
Sbjct: 119  LDTASDGAPHIKLDWL-EGRTGGLIALTGGPSGPIDRALAAGSHDQAEQRLHTLAELFGD 177

Query: 181  RLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            RLYV +QRH   +  R E+ +++LAY  +LPLVATN   F  ++DYEAHD L+ +A   +
Sbjct: 178  RLYVEIQRHGVAEERRVETALIELAYRLDLPLVATNEPFFAGQDDYEAHDALICIAEGRL 237

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            V++ DR ++TP+H  + R+EM+++F+DLPEAL NTVEIARRC++  +   PILPR     
Sbjct: 238  VAEGDRRQLTPEHRFRTRAEMMALFADLPEALANTVEIARRCAYRPRTVKPILPR----- 292

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               ++++E  ELR +A  GL  RLA    A G   +DY  RL FEL++I +MKF GYFLI
Sbjct: 293  -FTMERDEAEELRVQAEEGLRKRLAVHGPAPGLAEKDYEDRLAFELSIIEKMKFPGYFLI 351

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V+DFI+WAK   IPVGPGRGSGAGS+ AY+LTITD+DPLRF LLFERFLNP+R+SMPDFD
Sbjct: 352  VSDFIKWAKAQGIPVGPGRGSGAGSLVAYSLTITDLDPLRFGLLFERFLNPERVSMPDFD 411

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ+RRDEVIRYVQ +YG ++VAQIITFG+LQA+  LRDVGR L+MPY QVD+LCKL+
Sbjct: 412  IDFCQERRDEVIRYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLEMPYGQVDKLCKLV 471

Query: 480  PNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P +PA+PV+  QAI  + R +     +P V R  +I+ KLEGL RHASTHAAGIVIGDR 
Sbjct: 472  PQNPANPVTLTQAIEGEPRLQAESEQNPVVKRAFDIATKLEGLNRHASTHAAGIVIGDRK 531

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            LS LVP+YRD RSD+PVTQ+NMKW+E+AGL+KFDFLGLKTLT+LQ ++  +AQ G+++DL
Sbjct: 532  LSNLVPLYRDPRSDMPVTQYNMKWVEQAGLVKFDFLGLKTLTVLQTAVRLVAQLGIQLDL 591

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            S IP +D +TY +LT   T+G+FQ+ESSGMR+AL  M+PD +EDIIALV+LYRPGP+ NI
Sbjct: 592  STIPLNDEKTYAMLTRGETVGVFQVESSGMRRALVDMKPDRLEDIIALVALYRPGPMANI 651

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             VY   KNG E+ V  HP ++  LKET GVIIYQEQVMQIAQ LSGYSL EAD+LRRAMG
Sbjct: 652  PVYCAVKNGHEQAVYAHPALESSLKETYGVIIYQEQVMQIAQTLSGYSLGEADLLRRAMG 711

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KKI+ EMDKQ+ERF+SGA + G++K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+
Sbjct: 712  KKIRAEMDKQRERFVSGAVERGVAKAKASEIFDLLAKFADYGFNKSHAAAYALVSYQTAY 771

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            MK +Y  EFLAASMTL+M N +K+ +F Q+A++  I+++PPSVN    +F V + RI Y+
Sbjct: 772  MKANYATEFLAASMTLDMGNTDKLAEFRQEAQRLGIEVVPPSVNHSGREFAVKEGRILYA 831

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            LAAIKGVG      I+EA  D+PF SL DF +R+++K LN+R +ESLV AGA D    +R
Sbjct: 832  LAAIKGVGVHAVEAIVEARGDRPFASLSDFAARINAKALNKRTMESLVNAGAFDALEPNR 891

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             +   ++D+I  +A  V         N+F       + ++ +   +    + + + E   
Sbjct: 892  ARAAAAIDSILAHAASVGAEAAIGQGNMFGGPAA--ATELPIPNATPWLPAEKLQREYDA 949

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIG 1016
            +GF+ +GHPLD Y   L ++ ++ + +   ++R  +I  RLAA VVS+Q+++T+ G+++G
Sbjct: 950  IGFFLTGHPLDEYGKALDRLRVQRWSDFTRSVRAGSIAGRLAATVVSRQERRTKTGNKMG 1009

Query: 1017 WVTFSEPAKEYEANFF 1032
             V  S+P+ ++EA  F
Sbjct: 1010 IVGLSDPSGQFEAVLF 1025


>gi|160945128|ref|ZP_02092354.1| hypothetical protein FAEPRAM212_02647 [Faecalibacterium prausnitzii
            M21/2]
 gi|158442859|gb|EDP19864.1| hypothetical protein FAEPRAM212_02647 [Faecalibacterium prausnitzii
            M21/2]
          Length = 1169

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1056 (35%), Positives = 596/1056 (56%), Gaps = 42/1056 (3%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +++    +  F HL +H+ YSLL+GA  ++ +++++    Q AIA TD   ++  ++F +
Sbjct: 1    MSEPTANTRPFAHLHIHTEYSLLDGACRIDQLMERVKECGQTAIACTDHGVMYGCVQFYK 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  AGI+PIIGC++ +  +      N+          ++LL     GY+ LI++VS  +
Sbjct: 61   AAKKAGIKPIIGCEVYVATRTRFDKVNK----IDGNNHLILLCKNETGYKNLIKMVSAGF 116

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179
             ++      R+    L++   EGLI L+   +G I +A      + A+   L ++ LFG 
Sbjct: 117  -VEGFYSKPRVDKQLLEQYH-EGLICLSACLAGEIPQAILAGDYERAKATALWYRDLFGA 174

Query: 180  DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +  Y+ LQ H    D     Q+++L+    +P+ ATN++ +L +ED +   +L+ +    
Sbjct: 175  ENYYIELQDHGLKEDSTVLPQLIKLSRETGIPMAATNDAHYLRKEDAKMQSILLCIQTGK 234

Query: 239  VVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             +   DR    T + Y+K   EM  +FS +PEA  NT +IA +C+F  +     +P +  
Sbjct: 235  TIQDADRMEFQTDEFYVKTTDEMYELFSMVPEACANTAKIAEQCNFDFEFGHTKIPYYKA 294

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             +  D Q             GLE R            Q    RL +E++V+  M ++ Y+
Sbjct: 295  PDGMDNQ----AYFEKLCWDGLERRYGPDV------PQANIDRLKYEISVVKTMGYTNYY 344

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV D+I +AK   IPVGPGRGSGAGS+ AY + ITDIDP+R++L+FERFLNP+R+SMPD
Sbjct: 345  LIVWDYINFAKSQGIPVGPGRGSGAGSIAAYCVGITDIDPIRYNLIFERFLNPERVSMPD 404

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC +RR EVI YV  KYG + VAQI+TFG++ A+ A+RDVGR + +PY QVD + K
Sbjct: 405  FDVDFCYERRQEVIDYVNRKYGADHVAQIVTFGTMAARNAIRDVGRVMGIPYQQVDVVAK 464

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L+P +    +  +A+   S  ++    DP V  L++ + K+EG+ RHASTHAAG+VI   
Sbjct: 465  LVPMELKMTLK-RALEVSSELKKLYDTDPQVTELIDTALKVEGMPRHASTHAAGVVITPE 523

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            P    +P+       LPVTQFNM  IE+ GL+K DFLGL+TLT+++ +   + ++  +  
Sbjct: 524  PTDYYLPL--ATNDGLPVTQFNMTEIEELGLLKMDFLGLRTLTVIRDAEVAVQKQHPEFS 581

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            + ++ +DD +TY +L    T G+FQLESSGM+Q L G+QP  +ED+IAL+SLYRPGP+D+
Sbjct: 582  IRMLDYDDPDTYKMLGQGDTEGVFQLESSGMKQVLVGLQPQNLEDVIALISLYRPGPMDS 641

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y   ++  +KI    P +  +L  T G I+YQEQVMQI + L+G+S  +AD +RRAM
Sbjct: 642  IPTYLRNRHEPDKISYKTPQLAHILDVTNGCIVYQEQVMQIFRELAGFSFGQADNVRRAM 701

Query: 718  GKKIKEEMDKQKERFISGASKNGI----------SKTIAVNIFELLAKFADYGFNKSHAA 767
             KK    M+ ++E F+ G ++ G            + +A  I++ ++ FA Y FNKSHAA
Sbjct: 702  SKKKHAVMEAEREHFVHGCTEPGHECPGCVANGIPEQVANQIYDEMSSFASYAFNKSHAA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
             YA +++QTA++K HYP +F+AA +T  +DN +K+ ++  +  +  I+++PP VN     
Sbjct: 762  CYAYVAFQTAYLKCHYPSQFMAALLTSVLDNTDKVIEYSGECARLGIKVLPPDVNISNGG 821

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F   DN +I + L A+K VG     + +    +KP+ SL DFC R+   +LNRR +ESL+
Sbjct: 822  FTADDNGQIRFGLNAVKNVGRNLIENAVTERKEKPYTSLYDFCKRMHGSELNRRAVESLI 881

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-----TLE 941
             AGA DCFG +R  ++++++ I K  +   +       ++F+   G            + 
Sbjct: 882  KAGAFDCFGSNRHSMVEAVEGILKSIETDSRRNLEGQLDLFSVMSGEVQQSPQEDVYEIR 941

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRL 997
              +    +   + E+ V G Y SGHPLD Y+    ++G    ++          G  +R+
Sbjct: 942  PLAEYTPAELLQQEKEVSGLYLSGHPLDAYREKSARIGSHTIKDLTGEDAHVQDGEKVRI 1001

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               VV  +   T+  S + + +  +     E   FP
Sbjct: 1002 VCAVVKNRMMTTKSNSMMAFTSVEDLTGTMEVIVFP 1037


>gi|295105629|emb|CBL03173.1| DNA polymerase III catalytic subunit, DnaE type [Faecalibacterium
            prausnitzii SL3/3]
          Length = 1169

 Score =  829 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1056 (35%), Positives = 594/1056 (56%), Gaps = 42/1056 (3%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +++    +  F HL +H+ YSLL+GA  ++ +++++    Q AIA TD   ++  ++F +
Sbjct: 1    MSEPTANTRPFAHLHIHTEYSLLDGACRIDQLMERVKECGQTAIACTDHGVMYGCVQFYK 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  AGI+PIIGC++ +  +      N+          ++LL     GY+ LI++VS  +
Sbjct: 61   AAKKAGIKPIIGCEVYVATRTRFDKVNK----IDGNNHLILLCKNETGYKNLIKMVSAGF 116

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179
             ++      R+    L++   EGLI L+   +G I +A      + A+   L ++ LFG 
Sbjct: 117  -VEGFYSKPRVDKQLLEQYH-EGLICLSACLAGEIPQAILAGDYERAKATALWYRDLFGA 174

Query: 180  DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +  Y+ LQ H    D     Q+++L+    +P+ ATN++ +L +ED +   +L+ +    
Sbjct: 175  ENYYIELQDHGLKEDTTVLPQLIKLSRETGIPMAATNDAHYLRKEDAKMQSILLCIQTGK 234

Query: 239  VVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             +   DR    T + Y+K   EM  +FS +PEA  NT +IA +C+F  +     +P +  
Sbjct: 235  TIQDADRMEFQTDEFYVKTTDEMYELFSMVPEACANTAKIAEQCNFDFEFGHTKIPYYKA 294

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             +  D Q             GLE R            Q    RL +E+ V+  M ++ Y+
Sbjct: 295  PDGMDNQ----AYFEKLCWDGLERRYGPDV------PQANIDRLKYEIGVVKTMGYTNYY 344

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV D+I +AK   IPVGPGRGSGAGS+ AY + ITDIDP+R++L+FERFLNP+R+SMPD
Sbjct: 345  LIVWDYINFAKSQGIPVGPGRGSGAGSIAAYCVGITDIDPIRYNLIFERFLNPERVSMPD 404

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC +RR EVI YV  KYG + VAQI+TFG++ A+ A+RDVGR + +PY QVD + K
Sbjct: 405  FDVDFCYERRQEVIDYVNRKYGADHVAQIVTFGTMAARNAIRDVGRVMGIPYQQVDVVAK 464

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L+P +    +  +A+   S  ++    DP V  L++ + K+EG+ RHASTHAAG+VI   
Sbjct: 465  LVPMELKMTLK-RALEVSSELKKLYDTDPQVTELIDTALKVEGMPRHASTHAAGVVITPE 523

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            P    +P+       LPVTQFNM  IE+ GL+K DFLGL+TLT+++ +   + ++  +  
Sbjct: 524  PTDYYLPL--ATNDGLPVTQFNMTEIEELGLLKMDFLGLRTLTVIRDAETAVQKQHPEFS 581

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  + +DD +TY +L    T G+FQLESSGM+Q L G+QP  +ED+IAL+SLYRPGP+D+
Sbjct: 582  IRKLDYDDPDTYKMLGQGDTEGVFQLESSGMKQVLVGLQPQNLEDVIALISLYRPGPMDS 641

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y   ++  +KI    P +  +L  T G I+YQEQVMQI + L+G+S  +AD +RRAM
Sbjct: 642  IPTYLRNRHEPDKISYKTPQLAHILDVTNGCIVYQEQVMQIFRELAGFSFGQADNVRRAM 701

Query: 718  GKKIKEEMDKQKERFISGASKNGI----------SKTIAVNIFELLAKFADYGFNKSHAA 767
             KK    M+ ++E F+ G ++ G            + +A  I++ ++ FA Y FNKSHAA
Sbjct: 702  SKKKHAVMEAEREHFVHGCTEPGHECPGCVANGIPEQVANQIYDEMSSFASYAFNKSHAA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
             YA +++QTA++K HYP +F+AA +T  +DN +K+ ++  +  +  I+++PP VN     
Sbjct: 762  CYAYVAFQTAYLKCHYPSQFMAALLTSVLDNTDKVIEYSGECARLGIKVLPPDVNISNGG 821

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F   DN +I + L A+K VG     + +    +KP+ SL DFC R+   +LNRR +ESL+
Sbjct: 822  FTADDNGQIRFGLNAVKNVGRNLIENAVTERKEKPYTSLYDFCKRMHGSELNRRAVESLI 881

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-----TLE 941
             AGA DCFG +R  ++++++ I K  +   +       ++F+   G            + 
Sbjct: 882  KAGAFDCFGSNRHSMVEAVEGILKSIETDSRRNLEGQLDLFSVMSGEVQQSPQEDVYEIR 941

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRL 997
              +    +   + E+ V G Y SGHPLD Y+    ++G    ++          G  +R+
Sbjct: 942  PLAEYTPAELLQQEKEVSGLYLSGHPLDAYREKSARIGSHTIKDLTGEDAHVQDGEKVRI 1001

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               VV  +   T+  S + + +  +     E   FP
Sbjct: 1002 VCAVVKNRMMTTKSNSMMAFTSVEDLTGTMEVIVFP 1037


>gi|255657970|ref|ZP_05403379.1| DNA polymerase III, alpha subunit [Mitsuokella multacida DSM 20544]
 gi|260850171|gb|EEX70178.1| DNA polymerase III, alpha subunit [Mitsuokella multacida DSM 20544]
          Length = 1128

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1030 (36%), Positives = 600/1030 (58%), Gaps = 26/1030 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ +SLL+GA  +  +++   A    +IAITD   ++  ++F ++A   G++PI
Sbjct: 3    FTHLHVHTEFSLLDGASRIKELIETTKALGMDSIAITDHGAMYGVIDFYKEAKKQGVKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +      +              ++LL     GY+ L++LVS    ++      R
Sbjct: 63   IGCEVYVAPGARQEHREVNGVR---YYHLILLAENQTGYRNLVKLVSLAN-VEGMYYKPR 118

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +    L++   EG+I L+   +G I RA   ++ + A+  +  + ++FG +  ++ +Q H
Sbjct: 119  VDKDLLRQYH-EGIICLSACIAGEIPRAILQDNMERADALVREYLEIFGRENFFLEIQNH 177

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +  +  + +V+LA  +++ LVATN+  ++  ED E HD+L+ +  +      DR R 
Sbjct: 178  GLPEERKANAGLVELAKKYDVGLVATNDLHYVHREDSEFHDILLCIQMNKTFDDPDRMRF 237

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + D+YLK+  EM ++F DLPEA+ NT +IA RC    +     LP +          ++
Sbjct: 238  ASDDYYLKSPEEMAALFPDLPEAIANTEKIAARCKVDFEFGHLQLPYYPIPAPY---ADD 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E  LR+                     +  R+RL++EL +I RM +  YFLIV DFI ++
Sbjct: 295  EAYLRHLCEE-------NLPRRYATVTEKIRERLEYELGIIHRMGYDSYFLIVWDFINYS 347

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +++ I VGPGRGS AGS+ AY L IT++DPL++ LLFERFLNP+R++MPD D+DF   +R
Sbjct: 348  REHGIGVGPGRGSAAGSIVAYLLGITNLDPLKYDLLFERFLNPERVTMPDIDVDFDYIQR 407

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +VI YV+ +YG++ VAQI+TFG++ AK A+RDVGR L +PY++V  + KL+PN+    +
Sbjct: 408  GKVIDYVKERYGYDHVAQIVTFGTMAAKGAIRDVGRVLNLPYAEVAEIAKLVPNELKITL 467

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                + + + FR+A  +   V RL+++++K+EGL RH+STHAAG+VI   PL+  VP+  
Sbjct: 468  DKA-MQESADFRKAYESSEDVHRLIDLARKIEGLPRHSSTHAAGVVIARHPLTDYVPV-- 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
             +     VT+++   +E+ GL+K DFLGL+TLT++  ++  + + R  KVD+  IP  D 
Sbjct: 525  SISEGTLVTEYDKDHVEELGLLKMDFLGLRTLTVISDTIANIEKSRHEKVDIDKIPLTDG 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664
             T  +L    T  +FQ+ES+GM Q +  + P+   D+I LV+LYRPGP+ + +   +   
Sbjct: 585  LTSKMLCEGKTGAVFQMESAGMTQLVRDLAPENFADLIPLVALYRPGPLGSGMVEDFIKG 644

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++G++++  +HPL++P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK  E 
Sbjct: 645  RHGEKEVTYMHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGKKKHEI 704

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +  QKE F+ G  KN I   +A  IF+LL  FADYGFNKSH+AAYA++++QTA++K HYP
Sbjct: 705  LMAQKENFLDGCEKNHIDAGLANTIFDLLTHFADYGFNKSHSAAYALVAWQTAYLKAHYP 764

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EF+AA +T  MD   K+  + +  R+  I+I+PP +N     F V  + I + LAA++ 
Sbjct: 765  AEFMAAMLTSIMD-TPKVSTYIELCRRMGIKILPPDINASSAYFSVDGDAIRFGLAAVRN 823

Query: 845  VGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG T   ++        PF SL DFC RVD + +NRRV+ESL+  GA D FG  R QLL 
Sbjct: 824  VGETAIENVARIRETGGPFSSLSDFCRRVDMRVVNRRVIESLIKCGAFDSFGAKRSQLLA 883

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L      A   +K+  +    +F+ E    +  + L        + R   E+   GFY 
Sbjct: 884  VLPQTVMEAAQQQKDAVSGQMGLFSDETIEETGMLQLPDIDEVPKAERLRWEKEATGFYI 943

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            +GHPLD Y   L  +   G  +         +R+  M+   ++  T+KG  + + T  + 
Sbjct: 944  TGHPLDQYAAKLENLPRIGSLQPDTVRDKQVVRIGGMLTEAKRITTKKGDTMCFATVEDF 1003

Query: 1024 AKEYEANFFP 1033
                E   FP
Sbjct: 1004 TDSIEVTVFP 1013


>gi|197119463|ref|YP_002139890.1| DNA polymerase III subunit alpha [Geobacter bemidjiensis Bem]
 gi|197088823|gb|ACH40094.1| DNA polymerase III, alpha subunit [Geobacter bemidjiensis Bem]
          Length = 1156

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/1037 (38%), Positives = 617/1037 (59%), Gaps = 13/1037 (1%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++ + +FVHL +HS YSLL+GA+ + ++L K+     PA+A+TD  N+F  LEF  K   
Sbjct: 1    MDST-NFVHLHLHSQYSLLDGAIRIGDLLKKVKECHMPAVAMTDHGNMFGTLEFYLKCKD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PI+G ++ I  QD             +   ++LL     G++ L  LVS  Y  + 
Sbjct: 60   KGVKPILGSEVYIAPQDRFLKQAPSSPGQASSYHLILLCENMTGFKNLSYLVSAGY-KEG 118

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              +  RI    L +   EGLI+L+    G +      N    A      + + F    Y+
Sbjct: 119  FYRRPRIDKELLLK-HKEGLIVLSACLQGEVAYLAGRNKMDEARAAASWYAENFPGSYYI 177

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQ ++  ++     +++++A   +LPLVATN+  +L+ ED  AH++L+ +     +S  
Sbjct: 178  ELQENKLPEQDIANRRLMEIAREMDLPLVATNDCHYLNREDARAHEILLCIQTGKTMSDP 237

Query: 244  DRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                 +  + Y+K   EM   F   PEA+ENTV+IA RC+          P +   E + 
Sbjct: 238  THMAFSVDEFYVKTPQEMAQAFHYAPEAIENTVKIAERCNLEFDFKTYYFPAYEAPEGET 297

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            + ++ E E     V  L+    +  +      Q Y  RL  EL+ I +M F GYFLIVAD
Sbjct: 298  LDQQLEREATVGLVERLKKIRIKYNL-TEEQEQAYHARLRIELDCIKQMGFPGYFLIVAD 356

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK + IPVGPGRGS AGS+ A+ + ITDIDP+ ++LLFERFLNP+R+SMPD D+DF
Sbjct: 357  FINWAKDHGIPVGPGRGSAAGSLVAFCIRITDIDPMPYNLLFERFLNPERISMPDIDVDF 416

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVI+Y+  KYG E+V QIITFG++ A+  +RDVGRAL + + +VDR+ KL+P  
Sbjct: 417  CQDRREEVIQYMVEKYGREKVCQIITFGTMAARGVIRDVGRALDLTFGEVDRIAKLVPEV 476

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +    +  + + +E   ADP V  ++ ++ +LEGL RHASTHAAG+V+  R + + 
Sbjct: 477  LGITLDKA-LEQEPKLKELMAADPKVKEVMTVALRLEGLARHASTHAAGLVVAPRQMEEF 535

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
             P+Y+D ++    TQ++MK++EK GL+KFDFLGLK LT++  +   +   +    D++L+
Sbjct: 536  CPVYKDQKTGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIDNACKHIRNGKDPNFDITLL 595

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV-- 659
              DD E+Y LL    T G+FQLESSGM++ L  ++P C EDIIA+ +LYRPGP+ + +  
Sbjct: 596  RDDDEESYKLLQAGNTTGVFQLESSGMKELLVKLKPSCFEDIIAVCALYRPGPLGSGMVD 655

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RK+G+++ V   P ++P+LK+T GVI+YQEQVMQI++ L+GYSL  AD+LRRAMGK
Sbjct: 656  DFIERKHGRKQTVYDLPQLEPVLKDTYGVIVYQEQVMQISRSLAGYSLGGADLLRRAMGK 715

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  E+M K++++F+ G+ K G+       IF+L+AKFA+YGFNKSH+AAYA+++YQTA++
Sbjct: 716  KDAEQMAKERDKFLEGSEKLGLDGKKCAAIFDLMAKFAEYGFNKSHSAAYALVAYQTAFL 775

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYPVEF+AA +T +M N +K+ K   D R+  I+++PP +N     F+V D  + + L
Sbjct: 776  KAHYPVEFMAALLTEDMGNTDKVIKSIGDCREMGIEVLPPDINESDRSFRVLDKAMRFGL 835

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             A+K VG      I+EA  D+PF  L DFC RVD +++N+RV+E+L+  GA DC G  R 
Sbjct: 836  GAVKNVGEGAIEAIIEARGDEPFKDLFDFCERVDLRRVNKRVIEALIKCGAFDCTGAKRS 895

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRFENEQ 956
            QL+  L++     Q V++ R +   ++F   +   G       L +    +   R   E+
Sbjct: 896  QLMAGLEDAASAGQRVQQERESAQASLFGAAEIVRGANGGGNRLPEIPEWDEKYRLGCEK 955

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              +GF+ +GHPLD Y   +R+         +     + +R+  +  S ++  T+KG R+ 
Sbjct: 956  EAIGFFITGHPLDRYVADMRRFSSVDCSTILDAKEKSEVRICGVPASVKELITKKGDRMA 1015

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++   +     E   FP
Sbjct: 1016 FLALEDLVGSVEVVVFP 1032


>gi|154499865|ref|ZP_02037903.1| hypothetical protein BACCAP_03522 [Bacteroides capillosus ATCC 29799]
 gi|150271463|gb|EDM98720.1| hypothetical protein BACCAP_03522 [Bacteroides capillosus ATCC 29799]
          Length = 1161

 Score =  827 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1048 (34%), Positives = 583/1048 (55%), Gaps = 42/1048 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ +SLL+GA  +  +  ++    Q A+AITD   ++ A++F +   A G++P
Sbjct: 2    SFVHLHVHTEFSLLDGACRIPALAARVRELGQSAVAITDHGVMYGAVDFYRACKAEGVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +      ++          +VLL     GY+ L  LVSR +L D      
Sbjct: 62   IIGCEVYVAPRGMTDRVHE---LDAEARHLVLLCKNETGYRNLCYLVSRAFL-DGFYIKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +  TEGLI ++   +G + R     + + A++  L  K+ FG+  Y+ +Q H
Sbjct: 118  RIDKELLWQ-HTEGLIAMSACLAGEVPRLILGGNYEGAKRAALEMKEHFGEDYYLEIQDH 176

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                D      ++++     +PLVATN++ +   ED    D LM +     V    R + 
Sbjct: 177  SLPEDAEVVRGIIRIHEETGIPLVATNDAHYTRREDAAMQDTLMCIQMGRTVDDPGRMKF 236

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + Y+K+  EM  +F D PEA+ENTV +A +C+   +     LP F   E      + 
Sbjct: 237  ETEEFYIKSEEEMAQLFPDWPEAIENTVRVAEKCNLEFEFGKYHLPEFKLPEGWT---DP 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +    +    G   R  +G       +Q  +++L++E+ VI +M F  YFLIV+DFI +A
Sbjct: 294  DAYFEHLCWEGFARRYPEG-------SQKNKEQLEYEMGVIRQMGFVDYFLIVSDFIGYA 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K +NIPVGPGRGS AGS+ +Y + ITD+DP+++ L FERFLNP+R++MPD DIDFC  RR
Sbjct: 347  KSHNIPVGPGRGSAAGSMVSYCMNITDVDPVKYDLFFERFLNPERVTMPDIDIDFCIRRR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA--H 485
             EVI YVQ KYG + VAQI+TFG++ A+ A+RDVGRAL +PY+ VD + K +P+ P   H
Sbjct: 407  QEVIEYVQQKYGEDHVAQIVTFGTMAARGAIRDVGRALNIPYADVDAVAKQVPSGPGALH 466

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                +++    + R++   D  +  L++ ++ +EG+ RHASTHAAG+VI  RP+ + VP+
Sbjct: 467  ITLDESLKLSKQLRDSYEGDERIHNLIDTAKAIEGMPRHASTHAAGVVITKRPVYEYVPL 526

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                  +  VTQ+ M  +E+ GL+K DFLGL+ LT+L  ++  + +R    D+  IP  D
Sbjct: 527  --AKNDESVVTQYVMTTLEELGLLKMDFLGLRNLTVLDDAVQLVRRRIPDFDIHSIPDHD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
               + +L+   T G+FQ+ES+GM     G++P  IEDI A+++LYRPGP+++I  +   K
Sbjct: 585  PAVFKMLSDGKTSGVFQMESAGMTGVCVGLKPQNIEDITAIIALYRPGPMESIPRFIACK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
               +K+   HP+++P+LK T G I+YQEQV++I Q L GYSL +AD++RRA+ KK K ++
Sbjct: 645  QNPDKVKYKHPMLEPILKVTYGCIVYQEQVIRIFQELGGYSLGQADMVRRAISKKKKAQI 704

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +K+++ FI         G    G+ +    +I++ +  FA+Y FNK+HA +YA+++YQTA
Sbjct: 705  EKERQTFIYGDSERGIEGCIARGVPEQTGKDIYDEIYDFANYAFNKAHAVSYAIVAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            + K HY  E++AA +T  +D+ EK+ ++  + ++  I ++PP +N     F V    I +
Sbjct: 765  YFKCHYTREYMAALLTSVLDSSEKVAEYIAECKECGISLLPPDINESGASFTVTGENIRF 824

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LAA+KGVG    + +++       F SL DFCSR+    LN+RVLE+L+  GA D  G 
Sbjct: 825  GLAAVKGVGWGFIQSVLDERERGGAFQSLSDFCSRMMDADLNKRVLENLIKCGAFDSTGA 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFEN 954
             R QLL+    +        +       ++F    ++   + ++ L      +       
Sbjct: 885  RRSQLLKVFPQVVDSIAQTRRKNLEGQFDLFGGGGDQPQAAPEMELPDIPEFSRRELMTM 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT----------IRGNNIRLAAMVVSK 1004
            E+   G Y +GHP+D Y+   R+         ++             G  + +A ++ S 
Sbjct: 945  EKETTGLYLTGHPMDEYRETARRYHAAPIGAILSDFAKEEGNTDFQDGQKVNIAGVISSA 1004

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + K TR  S + +VT  +     E   F
Sbjct: 1005 KTKTTRNNSLMAYVTLEDDTGSMELLVF 1032


>gi|323705009|ref|ZP_08116585.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
            xylanolyticum LX-11]
 gi|323535435|gb|EGB25210.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
            xylanolyticum LX-11]
          Length = 1144

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1049 (37%), Positives = 601/1049 (57%), Gaps = 45/1049 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+G+  +  ++ +       +IAITD   ++ A++F ++A + G++PI
Sbjct: 2    FVHLHVHSEYSLLDGSCRIKELIKRTKELGMNSIAITDHGVMYGAIDFYKEAVSYGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +                  ++LL     GY+ L+++VS+  + D      R
Sbjct: 62   IGCEIYVSPRSLYDKEYGIDNL---NYHLILLCKNMTGYENLMKIVSKASI-DGFYYKPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            I   +L+E  +EGLI L+    G I      +  + A++  + +  +FG    Y+ LQ H
Sbjct: 118  IDHQYLKE-HSEGLIALSSCLGGEIPSYLISDDYEKAKETAIFYNSIFGTGNFYLELQYH 176

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
                     S++++L+    +PLVATN+  +L +ED+ AH+VL+ +     +   DR   
Sbjct: 177  GLSQQEKVNSELIKLSQELNIPLVATNDVHYLKKEDHLAHEVLLCIQTGKNMDDSDRMSF 236

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T   YLK+  EM  +FS   EALENTV+IA  C+   + +   LP+F   +        
Sbjct: 237  PTDQFYLKSPDEMYEMFSYCKEALENTVKIADMCNLEFEFNKTKLPKFEVPDGMK----S 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR   + GL  R             +  +RL++EL+VI +M +  YFLIV DFI++A
Sbjct: 293  DEYLRKLCIDGLYKRYPN-------PTDEVMERLNYELSVIEKMGYVDYFLIVWDFIKFA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            + N I  GPGRGS AGS+ AY L IT IDP++++LLFERFLNP+R+SMPD D DFC +RR
Sbjct: 346  RDNGIMTGPGRGSAAGSLVAYCLGITKIDPIKYNLLFERFLNPERVSMPDIDSDFCYERR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RVAQIITFG++ A+AA+RDVGRAL  PY++VD + K+IP +    +
Sbjct: 406  QEVIDYVVKKYGEDRVAQIITFGTMAARAAIRDVGRALNFPYAEVDVIAKMIPFELGMTI 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                I  +   ++    D  + RL++IS+ LEGL RHASTHAAG+VI   PL + VP+ +
Sbjct: 466  DKA-IELNPELKDKYEKDEKIRRLIDISRSLEGLPRHASTHAAGVVISSEPLVKYVPLQK 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
            +      VTQF M  +E+ GL+K DFLGL+TLT+++ +LD + + RG+ VD+  I F+D 
Sbjct: 525  N--EGSIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDTLDIVKETRGIDVDIDSIDFEDK 582

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            E Y L++   T G+FQLESSGM+Q +  ++P+ +ED+IA +SLYRPGP+D I  Y   KN
Sbjct: 583  EVYALISRGDTEGVFQLESSGMKQFMTELRPEKLEDVIAGISLYRPGPMDQIPRYIENKN 642

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E I   HPL+ P+L  T G ++YQEQVMQI + L+GYSL  +D++RRAM KK  + M+
Sbjct: 643  NPENIKYEHPLLKPILDVTYGCMVYQEQVMQIVRDLAGYSLGRSDLVRRAMAKKKMKVME 702

Query: 727  KQKERFISG------------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI G            A   G+ +  A  +F+ +  FA+Y FNKSHAAAYAV+++
Sbjct: 703  EERKNFIYGIKDENGNYVVPGAVNRGVDEATANRLFDEMIDFANYAFNKSHAAAYAVVAF 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YPVEF+AA +   +DN +K+  + Q  ++  IQI+PP +N     F V + +
Sbjct: 763  QTAYLKRYYPVEFMAALLNSFVDNTDKVAFYVQVLKKIGIQILPPDINESYSYFTVVNGK 822

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + LAA+K VG      I+E    +  + S+ DF  R+D  +LN++ +ESL+ AGA D 
Sbjct: 823  IRFGLAAVKNVGLNATLEIVEDRKKNGRYTSIIDFFERIDEMQLNKKAVESLIKAGAFDS 882

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            FG  R QLL   + I +      +       ++F  +  +     +L      +  V   
Sbjct: 883  FGVYRSQLLAVYEGIMESIHRSREKNIKGQMSLFESDSESHKIDYSLPDIKEFSKGVILS 942

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA---------TIRGNNIRLAAMVVSK 1004
             E+  +G Y SGHPLD Y+  +R++      +                 ++ L  +V SK
Sbjct: 943  MEKETMGLYISGHPLDEYQDDIRRIANCTTRDLKNSDDSFVKKSAFDDQDVVLVGIVESK 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + K T+  + + +V  ++     E   FP
Sbjct: 1003 KIKFTKNNNMMAFVNLADLYGTIEVIVFP 1031


>gi|253699799|ref|YP_003020988.1| DNA polymerase III subunit alpha [Geobacter sp. M21]
 gi|251774649|gb|ACT17230.1| DNA polymerase III, alpha subunit [Geobacter sp. M21]
          Length = 1155

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/1035 (39%), Positives = 615/1035 (59%), Gaps = 13/1035 (1%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S +FVHL +HS YSLL+GA+ + ++L K+     PA+A+TD  N+F  LEF  K    G
Sbjct: 2    DSANFVHLHLHSQYSLLDGAIRIGDLLKKVKECHMPAVAMTDHGNMFGTLEFYLKCKDKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG ++ I  Q  L               ++LL     G++ L  LVS  Y  +   
Sbjct: 62   IKPIIGSEVYIAPQSRLLKQAPA-AGEANSYHLILLCENMTGFKNLSYLVSAGY-KEGFY 119

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            +  RI    L +   EGLI+L+    G +      N    A      + + F    Y+ L
Sbjct: 120  RRPRIDKELLLK-HKEGLIVLSACLQGEVAYLAGRNKMDEARAAASWYAENFPGSYYIEL 178

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q ++  ++     +++++A   +LPLVATN+  +L+ ED  AH++L+ +     +S  +R
Sbjct: 179  QENKLPEQDVANRRLMEIAREMDLPLVATNDCHYLNREDARAHEILLCIQTGKTMSDPNR 238

Query: 246  PRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               +  + Y+K   EM + F   PEAL NTV+IA RC      +    P +   E + + 
Sbjct: 239  MAFSVDEFYVKTPEEMAAAFHYAPEALSNTVKIAERCHLEFDFNTYYFPAYEAPEGETLD 298

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            ++ E E +   +  L+    +  +      Q Y  RL  EL+ I +M F GYFLIVADFI
Sbjct: 299  QQLERESKAGLIERLKKIRIKYNL-TEEQEQGYHARLRIELDCIKQMGFPGYFLIVADFI 357

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAK + IPVGPGRGS AGS+ A+ + ITDIDP+ ++LLFERFLNP+R+SMPD D+DFCQ
Sbjct: 358  NWAKDHGIPVGPGRGSAAGSLVAFCIRITDIDPMPYNLLFERFLNPERISMPDIDVDFCQ 417

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVI+Y+  KYG E+V QIITFG++ A+  +RDVGRAL + + +VDR+ KL+P    
Sbjct: 418  DRREEVIQYMVEKYGREKVCQIITFGTMAARGVIRDVGRALDLTFGEVDRIAKLVPEVLG 477

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +    +  + + +E   ADP V  ++ ++ +LEGL RHASTHAAG+V+  R + +  P
Sbjct: 478  ITLEKA-LEQEPKLKELMAADPKVKEVMTVALRLEGLARHASTHAAGLVVAPRQMEEFCP 536

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +Y+D ++    TQ++MK++EK GL+KFDFLGLK LT++  +   +   +    D++L+  
Sbjct: 537  VYKDQKTGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIDNACKHIRNGKDPNFDITLLRD 596

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661
            DD E+Y LL    T G+FQLESSGM++ L  ++P C EDIIA+ +LYRPGP+ + +   +
Sbjct: 597  DDAESYKLLQAGNTTGVFQLESSGMKELLVKLKPSCFEDIIAVCALYRPGPLGSGMVDDF 656

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK+G+++ V   P ++P+LK+T GVI+YQEQVMQI++ L+GYSL  AD+LRRAMGKK 
Sbjct: 657  IERKHGRKQTVYDLPQLEPVLKDTYGVIVYQEQVMQISRSLAGYSLGGADLLRRAMGKKD 716

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E+M K++++F+ G+ K G+       IF+L+AKFA+YGFNKSH+AAYA+++YQTA++K 
Sbjct: 717  AEQMAKERDKFLEGSEKLGLDGKKCAAIFDLMAKFAEYGFNKSHSAAYALVAYQTAFLKA 776

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEF+AA +T +M N +K+ K   D R+  I+++PP +N     F+V D  + + L A
Sbjct: 777  HYPVEFMAALLTEDMGNTDKVIKSIGDCREMGIEVLPPDINESDRSFRVLDKAMRFGLGA 836

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            +K VG      I+EA  D+PF  L DFC RVD +++N+RV+E+L+  GA DC G  R QL
Sbjct: 837  VKNVGEGAIEAIIEARGDEPFKDLFDFCERVDLRRVNKRVIEALIKCGAFDCTGAKRSQL 896

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRFENEQRV 958
            +  L++     Q V++ R +   ++F   +   G       L      +   R   E+  
Sbjct: 897  MAGLEDAAATGQRVQQERESAQASLFGAAEIVRGGNGGGNRLPDIPEWDEKYRLGCEKEA 956

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +GF+ +GHPLD Y   +R+         +       +R+  +  + ++  T+KG R+ ++
Sbjct: 957  IGFFITGHPLDRYVADMRRFSTVDCSTILDAKEKGEVRICGVPSTVKELITKKGDRMAFL 1016

Query: 1019 TFSEPAKEYEANFFP 1033
               +     E   FP
Sbjct: 1017 ALEDLVGSVEVVVFP 1031


>gi|150396144|ref|YP_001326611.1| DNA polymerase III subunit alpha [Sinorhizobium medicae WSM419]
 gi|150027659|gb|ABR59776.1| DNA polymerase III, alpha subunit [Sinorhizobium medicae WSM419]
          Length = 1165

 Score =  825 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 642/1030 (62%), Positives = 794/1030 (77%), Gaps = 6/1030 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS+YSLLEGAL L  I+ K  AD QPAI I DTNNLF+ALEFSQKA   G+Q
Sbjct: 17   PQFVHLRVHSAYSLLEGALPLKKIIGKAIADDQPAIGIADTNNLFAALEFSQKAAGDGLQ 76

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTP-FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGCQL IDM+D  +   +G    F  +PS+VL+ +T +GY RL+ELVSR YL  +G  
Sbjct: 77   PIIGCQLSIDMEDEAEGERRGHAHQFVKLPSLVLIAATDDGYARLVELVSRAYLEGEGHH 136

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             VRI  SWL   GT GLI LTG  +GPID A    S  +AE RL T  +LFGDRLYV LQ
Sbjct: 137  QVRISRSWLSAGGTSGLIALTGAGTGPIDMAVKAGSPALAEARLKTLIELFGDRLYVELQ 196

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RH  YDR  E++++ LAY  ++PLVATN + F S  DY+AHD L+AVAH+ +VS   R R
Sbjct: 197  RHGNYDRSHENRMIDLAYRLDVPLVATNEAFFPSPADYDAHDALIAVAHNAMVSDDSRFR 256

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE- 306
            +TPDHYLK+R EM ++F+DLPEALENT+EIARRCSF+L+  +PILPRF     D  Q E 
Sbjct: 257  LTPDHYLKSRKEMAALFADLPEALENTIEIARRCSFMLKTRSPILPRFTGASGDPEQAER 316

Query: 307  -EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E  ELR +A  GLE RLA+  +A GY  +DYR+RL FEL VI RMKF GYFLIVADFI+
Sbjct: 317  AEVAELRRQAEEGLEGRLAKLGMAPGYKEEDYRERLAFELGVIERMKFPGYFLIVADFIK 376

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK+++IPVGPGRGSGAGS+ AYALTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQD
Sbjct: 377  WAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDFDIDFCQD 436

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA+
Sbjct: 437  RREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPAN 496

Query: 486  PVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            P    +AI ++ R +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLSQLVP
Sbjct: 497  PTPLSKAIEEEPRLQEEAEKEPVVGRLLDIAQKIEGLYRHASTHAAGIVIGDRPLSQLVP 556

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            MYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ +DL+ IP D
Sbjct: 557  MYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFVAKRGIHIDLASIPLD 616

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY  L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI +YN R
Sbjct: 617  DPKTYETLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPIYNAR 676

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+E+I SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIKEE
Sbjct: 677  KHGEEEIESIHPKIDYLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKEE 736

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MDKQ+ RF+ GA +NG+SK  A  IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HYP
Sbjct: 737  MDKQRARFVDGAVRNGVSKPQADLIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYP 796

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAASMTL+M N EKI  F QDA +  IQ++ PSV T    F+ G+ RIYYSLAA+KG
Sbjct: 797  VEFLAASMTLDMSNTEKINDFRQDAMRLGIQVIAPSVQTSHRHFETGEKRIYYSLAALKG 856

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG +   HI+    D+PF SLEDFC R+D K LNRRV ESL+ AGA DCFGY R +L+  
Sbjct: 857  VGESAVDHIVAVREDRPFASLEDFCLRIDPKLLNRRVFESLIAAGAFDCFGYDRAELVGG 916

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            LD I  +AQ  ++N+ +   ++F     T  +KI L  ++   +S +   E +VLGFY S
Sbjct: 917  LDRILGFAQRAQENKVSGQSDMFGAGAATGPEKIALPPYTPWLASEKLHREFQVLGFYLS 976

Query: 965  GHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             HPLD Y  +L KM ++ + +   A  +G    RLA  V SKQ++KTR G+++G V FS+
Sbjct: 977  AHPLDTYNSLLAKMRVQTFADFSAAVKKGATAGRLAGTVTSKQERKTRTGNKMGIVAFSD 1036

Query: 1023 PAKEYEANFF 1032
             + ++EA  F
Sbjct: 1037 ASGQFEAVLF 1046


>gi|15965042|ref|NP_385395.1| DNA polymerase III subunit alpha [Sinorhizobium meliloti 1021]
 gi|307301114|ref|ZP_07580883.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C]
 gi|15074221|emb|CAC45868.1| Probable DNA polymerase III, alpha chain [Sinorhizobium meliloti
            1021]
 gi|306904069|gb|EFN34655.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C]
          Length = 1169

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 637/1030 (61%), Positives = 786/1030 (76%), Gaps = 6/1030 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS+YSLLEGAL L  I+ K  AD QPAI I DTNNLF+ALEFSQKA   G+Q
Sbjct: 21   PQFVHLRVHSAYSLLEGALPLKKIIGKAVADDQPAIGIADTNNLFAALEFSQKAADDGLQ 80

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTP-FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGCQL IDM+D  +   +G    F  +P+IVL+ +T +GY RL+ELVSR YL  +G Q
Sbjct: 81   PIIGCQLSIDMEDEAEGERRGHAHQFVKLPAIVLIAATEDGYARLVELVSRAYLEGEGHQ 140

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              RI  SWL   GT GLI LTG  +GP+D A    S  +AE RL    +LFGDRLYV LQ
Sbjct: 141  QTRISRSWLAAGGTTGLIALTGAGAGPVDMALKSGSPALAEARLKALIELFGDRLYVELQ 200

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RH  YDR  E++++ LAY  ++PLVATN + F S  DY+AHD LMAVAH+ +VS   R R
Sbjct: 201  RHGNYDRRHENRMIDLAYRLDIPLVATNEAFFPSPSDYDAHDALMAVAHNAMVSDDSRFR 260

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +TPDHYLK+R EM ++F+DLPEALENT+E+ARRCSF+L+   PILPRF     D  + E 
Sbjct: 261  LTPDHYLKSRKEMAALFADLPEALENTIEVARRCSFMLKTRGPILPRFTGASDDPEEAER 320

Query: 308  ENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 LR +A  GLE RLA+  +A GY  +DYR+RL FEL VI RMKF GYFLIVADFI+
Sbjct: 321  AEVAELRRQAEEGLEERLAKLGMAPGYKEEDYRERLAFELGVIQRMKFPGYFLIVADFIK 380

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK+++IPVGPGRGSGAGS+ AYALTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQD
Sbjct: 381  WAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDFDIDFCQD 440

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA+
Sbjct: 441  RREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPAN 500

Query: 486  PVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            P    +AI ++ R RE    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLSQLVP
Sbjct: 501  PTPLSKAIEEEPRLREEAEKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSQLVP 560

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            MYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+ +RG+ +DL+ IP D
Sbjct: 561  MYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAIDFVGKRGIHIDLASIPLD 620

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY  L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN R
Sbjct: 621  DPKTYETLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYNAR 680

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+E+I SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK E
Sbjct: 681  KHGEEEIESIHPKIDYLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKAE 740

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MDKQ+ RF+ GA KNG+SK  A  IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HYP
Sbjct: 741  MDKQRARFVDGAVKNGVSKPQADLIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYP 800

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAASMTL+M N +KI  F QDA +  IQ++ PSV T    F+ GDNRIYYSLAA+KG
Sbjct: 801  VEFLAASMTLDMSNTDKINDFRQDAMRLGIQVVAPSVQTSHRHFETGDNRIYYSLAALKG 860

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG +   HI+    D+PF SLEDFC R+D K LNRRV ESL+ AGA DCFGY R +L+  
Sbjct: 861  VGESAVDHIVAVRGDRPFASLEDFCLRIDPKLLNRRVFESLIAAGAFDCFGYDRAELIGG 920

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            LD I  +AQ  ++N+ +   ++F     T  +KI L  ++   +S +   E +VLGFY S
Sbjct: 921  LDRILGFAQRAQENKVSGQSDMFGAGAATGPEKIALPPYTPWLASEKLHREFQVLGFYLS 980

Query: 965  GHPLDVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             HPLD Y  +L KM ++ + +            RLA  V SKQ++KTR G+++G V FS+
Sbjct: 981  AHPLDTYNNLLAKMRVQTFADFSAAVKKGAAAGRLAGTVTSKQERKTRTGNKMGIVAFSD 1040

Query: 1023 PAKEYEANFF 1032
             + ++EA  F
Sbjct: 1041 ASGQFEAVLF 1050


>gi|312793441|ref|YP_004026364.1| DNA polymerase III subunit alpha [Caldicellulosiruptor kristjanssonii
            177R1B]
 gi|312180581|gb|ADQ40751.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
            kristjanssonii 177R1B]
          Length = 1140

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1033 (37%), Positives = 598/1033 (57%), Gaps = 30/1033 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA  ++ + +++      A+AITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHLHTEYSLLDGACRIDRLFERVKELNMNAVAITDHGVMYGVIDFYKAAKENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +               +  +VLL    EGY+ L ++VS  + ++      
Sbjct: 62   IIGCEVYLAPRTRFDKEP---NIDNDIHHLVLLAMDNEGYKNLSKIVSIGF-VEGFYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L +  ++GL+ LT   +G I +       +     +  +K++FG+  Y  LQ H
Sbjct: 118  RVDREVLSKY-SKGLVALTSCLAGEIPKLILREQKEKLYDAISFYKEVFGENFYFELQYH 176

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++    +++++L+  +++PLVATN+  +L  ED   HD+L+ +     +S  +R   
Sbjct: 177  YIDEQRFVNNELMRLSKKYQIPLVATNDVHYLRREDRNLHDILLCIQTGKTISDSNRMEF 236

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM  IF  +PEAL+NT+EIA +C+   +     LP+F   E    + + 
Sbjct: 237  PTDEFYLKSPEEMQQIFGYIPEALKNTLEIAEKCNVEFEFGKINLPKFQLPEG---KSDA 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+  A+ G +              +    RL  EL VI  M F  YFLIV DFI +A
Sbjct: 294  FEYLKELALEGFKK-------RYSKDDKAAYDRLMMELQVIKDMGFVEYFLIVRDFINYA 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDFC  RR
Sbjct: 347  KQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDIDFCYQRR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP  P   +
Sbjct: 407  QEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGIPYSQVDEIAKMIPFSPGMTI 466

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                +  +   ++    + +V ++++ ++ LEG+ RHAS HAAG+VI   P++ LVP+  
Sbjct: 467  DKA-LEINHELKKIYEQNDTVRKIIDTARNLEGMPRHASVHAAGVVISSCPITDLVPL-- 523

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D  VTQF M  +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL  I ++D 
Sbjct: 524  ARTDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLDRIDYNDK 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y  ++   T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I VY   KN
Sbjct: 584  NVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIPVYIQNKN 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +EKI  +HP ++P+L  T G I+YQEQVMQI + L+GYSL  AD++RRAM KK  + + 
Sbjct: 644  NREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAKKKADILM 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            ++K+RFI GA  NG+ K  A  IF ++  FA Y FNKSHAAAYA+++YQTA++K +Y +E
Sbjct: 704  EEKDRFIEGAMANGVEKETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYLKKYYTIE 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+ + +T  M++ EK+  + ++ R+F I I+PP +N    DF +  N I + L AIK +G
Sbjct: 764  FMTSLITSVMNSNEKVGMYIEECRKFGISILPPDINKSSYDFTIEGNSIRFGLRAIKSLG 823

Query: 847  TTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                 HI++       F  L DF  RVD+  +N+R++E+L+ +GA D  G +R  LL S+
Sbjct: 824  ENVIAHILKEREVKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGINRNSLLASV 883

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            ++I        K +     + F    G  ++    +      +    + E+  +G Y S 
Sbjct: 884  EDIL--VLKQAKKKNANQFSFF-EISGNENESFEYKNMPQPTAQELMKMEKDTIGIYISS 940

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNN-----IRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            HPL+ Y   + K  +    E       +      I +  ++   + K T+    + +   
Sbjct: 941  HPLERYTEEISKYNVTPLSEISTMSEEDEYKFEQILVCGILKEVKVKLTKNNQTMAFAKL 1000

Query: 1021 SEPAKEYEANFFP 1033
             +     E  FFP
Sbjct: 1001 EDLTDSVEVLFFP 1013


>gi|86357261|ref|YP_469153.1| DNA polymerase III subunit alpha [Rhizobium etli CFN 42]
 gi|86281363|gb|ABC90426.1| DNA polymerase III alpha subunit protein [Rhizobium etli CFN 42]
          Length = 1165

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 642/1031 (62%), Positives = 811/1031 (78%), Gaps = 6/1031 (0%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P F+HL+VHS+YSLLEGAL L  IL K   D QPAIAITDTNNLF ALEFSQKA   G+
Sbjct: 16   TPGFIHLRVHSAYSLLEGALPLKKILYKATGDNQPAIAITDTNNLFVALEFSQKAMDEGL 75

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            QPIIGCQ+ IDM+D L+   +G       +PSIVLL +T  GY+RL++LVSR YL     
Sbjct: 76   QPIIGCQVSIDMEDGLESEKRGGQQALIKLPSIVLLAATEAGYERLVDLVSRAYLGGDSN 135

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q+V I  SWL+E GTEGLI LTG  +GP+D A        AE RLLT K+LFGDRLYV L
Sbjct: 136  QAVHIRASWLEEAGTEGLIALTGALTGPVDAAVREGHPAQAEARLLTLKRLFGDRLYVEL 195

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            QRH  YD+  E ++V+LAYTH+LPLVATN + F + +DY+AHD LMAVAH+ +VS   R 
Sbjct: 196  QRHGTYDKRHEQKIVRLAYTHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQ 304
            R+TPDHYLK+R+EM  +F+DLPEALENT+EIA+RCSF+L+   PILPRF     + ++ +
Sbjct: 256  RLTPDHYLKSRAEMARLFADLPEALENTIEIAKRCSFVLKTRKPILPRFTGATDDAEEAE 315

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            + E  ELR +AV GL++RLA   ++ GY  +DYR+RL+FEL+VI RM+F GYFLIV+DFI
Sbjct: 316  RAEAGELRRQAVEGLDMRLATLGMSPGYEEKDYRERLEFELSVIERMRFPGYFLIVSDFI 375

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 376  KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA
Sbjct: 436  DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495

Query: 485  HPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +P    +AI ++ + +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV
Sbjct: 496  NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VDL+ IP 
Sbjct: 556  PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKRGINVDLAAIPL 615

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN 
Sbjct: 616  DDKPTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPVYNA 675

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+E++ SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK 
Sbjct: 676  RKHGEEEVESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMD+Q+ERF+ GA KNG+ K  A  IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HY
Sbjct: 736  EMDQQRERFVEGAVKNGVKKPQADVIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASMTL+M N EK+  F QDA++  I+++ PSV T    F+ GDNRIYY+LAA+K
Sbjct: 796  PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRHFETGDNRIYYALAALK 855

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG +   HI+E   DKPF S+EDFC R+D +++NRRVLESL++AGA DCFG  R QL  
Sbjct: 856  GVGESAVDHIVEVRGDKPFASIEDFCLRIDPRQVNRRVLESLIYAGAFDCFGTDRAQLAA 915

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             LD I  YAQ  ++N+ +   +IF     +  +KI+L  +S   +S R   E +VLGFY 
Sbjct: 916  GLDRILGYAQRAQENKLSGQSDIFGSALNSGPEKISLPPYSPWLASERLLKEFQVLGFYL 975

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            + HPLD Y  IL+KM ++ + E  A I+    N RLA  V+SKQ++KTR G+++G + FS
Sbjct: 976  TAHPLDSYNNILQKMRVQTFAEFSAAIKQGAANARLAGTVISKQERKTRTGNKMGIIVFS 1035

Query: 1022 EPAKEYEANFF 1032
            + + ++EA  F
Sbjct: 1036 DSSGQFEAVLF 1046


>gi|312876042|ref|ZP_07736031.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor lactoaceticus
            6A]
 gi|311797240|gb|EFR13580.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor lactoaceticus
            6A]
          Length = 1140

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1033 (36%), Positives = 597/1033 (57%), Gaps = 30/1033 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA  ++ + +++      A+AITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHLHTEYSLLDGACRIDRLFERVKELNMNAVAITDHGVMYGVIDFYKAAKENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +               +  ++LL    EGY+ L ++VS  + ++      
Sbjct: 62   IIGCEVYLAPRTRFDKEP---NIDNDIHHLILLAMDNEGYKNLSKIVSIGF-VEGFYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L +  ++GL+ LT   +G I +       +     +  +K++FG+  Y  LQ H
Sbjct: 118  RVDREVLSKY-SKGLVALTSCLAGEIPKLILREQKEKLYDAISFYKEVFGENFYFELQYH 176

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++    +++++L+  +++P+VATN+  +L  ED   HD+L+ +     +S  +R   
Sbjct: 177  YIDEQRFVNNELMRLSKKYKIPIVATNDVHYLRREDRNLHDILLCIQTGKTISDSNRMEF 236

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM  IF  +PEAL+NT+EIA +C+   +     LP+F   E    + + 
Sbjct: 237  PTDEFYLKSPEEMQQIFGYIPEALKNTLEIAEKCNVEFEFGKINLPKFQLPEG---KSDA 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+  A+ G +              +    RL  EL VI  M F  YFLIV DFI +A
Sbjct: 294  FEYLKELALEGFKK-------RYSKDDKAAYDRLMMELQVIKDMGFVEYFLIVQDFINYA 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDFC  RR
Sbjct: 347  KQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDIDFCYQRR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP  P   +
Sbjct: 407  QEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGIPYSQVDEIAKMIPFSPGMTI 466

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                +  +   ++    + +V ++++ ++ LEG+ RHAS HAAG+VI   P++ LVP+  
Sbjct: 467  DKA-LEINHELKKIYEQNDTVRKIIDTARNLEGMPRHASVHAAGVVISSCPITDLVPL-- 523

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D  VTQF M  +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL  I ++D 
Sbjct: 524  ARTEDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLDRIDYNDK 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y  ++   T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I VY   KN
Sbjct: 584  NVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIPVYIQNKN 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +EKI  +HP ++P+L  T G I+YQEQVMQI + L+GYSL  AD++RRAM KK  + + 
Sbjct: 644  NREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAKKKADILM 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            ++K+RFI GA  NG+ K  A  IF ++  FA Y FNKSHAAAYA+++YQTA++K +Y +E
Sbjct: 704  EEKDRFIEGAMANGVEKETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYLKKYYTIE 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+ + +T  M++ EK+  + ++ R+F I I+PP +N    DF +  N I + L AIK +G
Sbjct: 764  FMTSLITSVMNSNEKVGMYIEECRKFGISILPPDINKSSYDFTIEGNSIRFGLRAIKSLG 823

Query: 847  TTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I++       F  L DF  RVD+  +N+R++E+L+ +GA D  G +R  LL S+
Sbjct: 824  ENVIAQILKEREVKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGINRNSLLASV 883

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            ++I        K +     + F    G  ++    +      +    + E+  +G Y S 
Sbjct: 884  EDIL--VLKQAKKKNANQFSFF-EISGNENESFEYKNMPQPTAQELMKMEKDTIGIYISS 940

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNN-----IRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            HPL+ Y   + K  +    E       +      I +  ++   + K T+    + +   
Sbjct: 941  HPLERYTEEISKYNVTPLSEISTMSEEDEYKFEQILVCGILKEVKVKLTKNNQTMAFAKL 1000

Query: 1021 SEPAKEYEANFFP 1033
             +     E  FFP
Sbjct: 1001 EDLTDSVEVLFFP 1013


>gi|304438918|ref|ZP_07398841.1| DNA polymerase III alpha subunit [Peptoniphilus duerdenii ATCC
            BAA-1640]
 gi|304372584|gb|EFM26167.1| DNA polymerase III alpha subunit [Peptoniphilus duerdenii ATCC
            BAA-1640]
          Length = 1140

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1043 (35%), Positives = 587/1043 (56%), Gaps = 45/1043 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G+  +  +  K+      +IAITD  N+F A++F +     G++PI
Sbjct: 2    FTHLHVHTEYSLLDGSTRIKELPKKVKELGMDSIAITDHGNMFGAIQFYKACKDEGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +   +        K        ++LL    +GY+ L+++VS+ + +D      R
Sbjct: 62   MGCEVYVSSTNLNVKDRTSKR-----YHLILLAENNKGYENLMKIVSKGW-VDGFYYKPR 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +    L+E  +EG+I L+    G + R       + A K  L ++ +FG D  ++ +Q H
Sbjct: 116  VDKKVLREY-SEGIIALSACLQGEVQRKILDRDFEAARKAALEYQDIFGKDNFFLEVQNH 174

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++      +  L+    +PL ATN+  +L + D +AHDVL+ +   T++S   R + 
Sbjct: 175  GIREQLEANIHLRNLSGELGIPLAATNDVHYLEKSDAKAHDVLLCIQTGTILSDGKRMKF 234

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + + YLK+  EM     D  +A+ENT EIA+RC+  ++ H   LP+F   +        
Sbjct: 235  PSDEFYLKSEDEMKEALPDFVDAIENTYEIAKRCNVTIEFHNYHLPKFDVPDG----YTN 290

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L+  A+ GL  +            +   +R +FELN I  M ++ YFLIV DFI +A
Sbjct: 291  DEYLKELALKGLREKYEN-------LDEKIMERFNFELNTIISMGYTDYFLIVWDFINYA 343

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+N I VGPGRGS AGS+ +Y L I D+DPLRF LLFERFLNP+R+SMPD DIDFC +RR
Sbjct: 344  KENGIMVGPGRGSAAGSIISYGLGIIDVDPLRFDLLFERFLNPERVSMPDIDIDFCYERR 403

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI YV  KYG + VAQI TFG++ A+ A+RDVGR + + YS+VD++ K+IP +    +
Sbjct: 404  EEVIEYVNRKYGKDHVAQIATFGTMAARGAIRDVGRVMDISYSKVDQVAKMIPQELNITI 463

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +AI      R A   DP V  +++ + K+EGL RH STHAAG+VI +R ++  VP+  
Sbjct: 464  -NKAIEMSEDLRNAMRDDPQVKGIIDTALKVEGLPRHMSTHAAGVVISNRDVTDYVPL-- 520

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                +  +TQFNM  +E+ GL+K DFLGL+TLT+++ +++ + +   +++D     FDD 
Sbjct: 521  ARTDEQLLTQFNMTELEELGLLKMDFLGLRTLTVIRDAVNMVKENYGIEIDFKDQGFDDK 580

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            E   L     TLGIFQ ESSGMR  L+ ++ D  ED++A  +L+RPGP+  I  +   K+
Sbjct: 581  EVIDLFKHANTLGIFQFESSGMRAFLKELKADAFEDLVAANALFRPGPMSQIPRFIESKH 640

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
               KI  IHP ++P+L  T G I+YQEQVMQI Q + GYSL  AD++RRAM KK    M+
Sbjct: 641  DPSKISYIHPSLEPILNVTYGCIVYQEQVMQIVQQIGGYSLGRADLVRRAMSKKKMSVME 700

Query: 727  KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +++  FI             GA  NG+ +  A  I++L+  FA+Y FNKSH+ AY+V++Y
Sbjct: 701  EERNNFIYGLKDEEGNVLIKGALANGVDEKSANEIYDLMIDFANYAFNKSHSVAYSVVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            +TA++K +YP EF+A+ ++  M + +++  + ++ ++ NI+++PPSVN     F V ++ 
Sbjct: 761  RTAFLKRYYPKEFMASQISSFMSSPKQVALYAEELKRLNIKLLPPSVNESRNKFTVEEDA 820

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR---VDSKKLNRRVLESLVFAGAL 891
            + + L A+K VG      I+EA  +K F S+ DF  R   V+S  +N+R LESL+ AGA 
Sbjct: 821  VRFGLKAVKNVGDNFIDAIVEARKEKKFTSMTDFIRRVVEVNSSAINKRALESLIKAGAF 880

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R + L   + I +  Q   KN      ++F       +D+  L      +   +
Sbjct: 881  DFLPGNRAKYLAVYERILESVQSGIKNNVKGQFSMFNE----KTDEDDLPNLKDFDEKTK 936

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTR 1010
               E  +LG Y SGHPL+ Y+  +         +       G N++++ ++  K+   T+
Sbjct: 937  LNMEYEMLGIYASGHPLNPYRNAIENNSSTNTSKIFENPVNGQNVKISGIIKQKRNLITK 996

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
                + + T  +     E   FP
Sbjct: 997  NNKMMCFATLEDFFGTIELIVFP 1019


>gi|154248204|ref|YP_001419162.1| DNA polymerase III subunit alpha [Xanthobacter autotrophicus Py2]
 gi|154162289|gb|ABS69505.1| DNA polymerase III, alpha subunit [Xanthobacter autotrophicus Py2]
          Length = 1150

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 543/1033 (52%), Positives = 727/1033 (70%), Gaps = 12/1033 (1%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL VHSSYSLLEGALS+  + D + AD QPAIA+TDT NLF ALEFS+K   
Sbjct: 1    MPD-PGFIHLHVHSSYSLLEGALSIGKLADLVKADAQPAIALTDTGNLFGALEFSEKMSG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPI G  L +D+ +            P  P IVLL  +  G++ L+ LVSR +L   
Sbjct: 60   AGIQPIAGVSLALDLPE---PAGPRGAIRPKRPRIVLLAQSEPGWRNLMRLVSRSFLETA 116

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +   RI   WL +   +GLI LTGG +GPID+A      ++A +RL     LFGDRLYV
Sbjct: 117  SEDEPRILPDWLADAH-DGLIALTGGPAGPIDKALVSGHPELAAERLDLLASLFGDRLYV 175

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QRH    +R  E+ +++LAY   LPLVA+N   F S+ DYEAHD L+ +A   ++S+ 
Sbjct: 176  EVQRHDTDAERLAEAGLLELAYAKGLPLVASNEPFFASKTDYEAHDGLLCIAEGRLLSEG 235

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD-D 302
            DR R+TP+H  K R+EM+++F+DLPEA  NTVEIARRC++ ++   PILPRF     D D
Sbjct: 236  DRRRLTPEHRFKTRAEMLALFADLPEATANTVEIARRCAYRVRTVKPILPRFTSGGGDGD 295

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
               EE  EL  +A  GL  RL +   A G     Y +RL +EL+VI +MKF GYFLIV+D
Sbjct: 296  PLAEEAAELERQAKEGLAQRLEKHGPAPGLDIATYEERLAYELSVITKMKFPGYFLIVSD 355

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK ++IPVGPGRGSGAGS+ AY+L ITD+DP+RF LLFERFLNPDR+SMPDFD+DF
Sbjct: 356  FIKWAKAHDIPVGPGRGSGAGSLVAYSLQITDLDPIRFGLLFERFLNPDRVSMPDFDVDF 415

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ+RRDEVI YVQ +YG  +VAQIITFG+LQA+  LRDVGR L+MPY QVD+LCKL+P +
Sbjct: 416  CQERRDEVIHYVQERYGRAQVAQIITFGTLQARGVLRDVGRVLEMPYGQVDKLCKLVPQN 475

Query: 483  PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PV+  QAI D+ R + +R  +  V R  +I+ +LEGL RHASTHAAGIVIGDR L +
Sbjct: 476  PANPVTLKQAIEDEPRLQASRDQEEVVKRAFDIAVRLEGLNRHASTHAAGIVIGDRKLHE 535

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVP+YRD +SD+PVTQ+NMKW+E+AGL+KFDFLGLKTLT + K++  + QRG+ +D+S I
Sbjct: 536  LVPLYRDPKSDMPVTQYNMKWVEQAGLVKFDFLGLKTLTTIDKAVKLIHQRGIDLDISKI 595

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD +TY +L    T+G+FQ+ES+GMR+AL  M+ D +ED+IALV+LYRPGP+ NI VY
Sbjct: 596  PLDDPKTYAMLGKGETVGVFQVESAGMRRALVDMKADRVEDLIALVALYRPGPMANIPVY 655

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             + K+G+ K   +HP+++P LKET GVIIYQEQVMQIAQ ++GYSL EAD+LRRAMGKKI
Sbjct: 656  CDCKHGRAKPDYLHPMLEPYLKETFGVIIYQEQVMQIAQAMAGYSLGEADLLRRAMGKKI 715

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            + EM+KQ+ERF+SG++  GI K  A  IF+LLAKFADYGFNKSHAAAYA+++YQTAW+K 
Sbjct: 716  RAEMEKQRERFVSGSAGRGIEKAQADTIFDLLAKFADYGFNKSHAAAYAIVAYQTAWLKA 775

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +YP EFLAASMTL+M N +K+ +F Q+A++  I+++PP++N    +F V D +I Y++ A
Sbjct: 776  NYPTEFLAASMTLDMGNTDKLAEFRQEAQRLGIEVVPPNINLSAREFAVKDGKIIYAMCA 835

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG      ++ A  D+PF S  DF SR+  K +N+R LESL+ AG  D    +R + 
Sbjct: 836  IKGVGGAAVDALVAARGDRPFRSFADFASRLPVKLVNKRTLESLMAAGCFDVLEKNRARA 895

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
              ++++I   AQ VE N  +   ++F    G  +  + + + +    S R + E   +GF
Sbjct: 896  FAAIESIVAEAQRVEANAQSGQNDMFG--SGPSAVSLPIPEVAPWLPSERLQKEYDAIGF 953

Query: 962  YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            + +GHPLD Y   L+KM ++ + +   A   G    RLAA VVSKQ+++T+ G+R+G V 
Sbjct: 954  FLTGHPLDDYADALKKMRVQSFSDFSRAVRSGAAAGRLAATVVSKQERRTKSGTRMGIVG 1013

Query: 1020 FSEPAKEYEANFF 1032
             S+P+  YEA  F
Sbjct: 1014 LSDPSGHYEAVIF 1026


>gi|85859457|ref|YP_461659.1| DNA polymerase III subunit alpha [Syntrophus aciditrophicus SB]
 gi|85722548|gb|ABC77491.1| DNA polymerase III alpha subunit [Syntrophus aciditrophicus SB]
          Length = 1155

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1036 (39%), Positives = 620/1036 (59%), Gaps = 22/1036 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL VH+ YSLL+G + + +++ K       A+A+TD  N+F  ++F Q AC  GI+P
Sbjct: 5    TFVHLHVHTQYSLLDGTIRIKDLISKAKEFGMQAVAMTDHGNMFGTIDFYQAACKEGIKP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +  +   + T  G +   T   +++L    +GYQ L++L S  YL D      
Sbjct: 65   IIGCELYVAPKTRFEKT--GGSIGDTARHLLVLAKDYQGYQNLMKLSSLGYL-DGFYYRP 121

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+    L++   +GLI L+   +G I      +  + A      ++++FG+   Y+ +  
Sbjct: 122  RVDKELLKKYH-KGLIALSACLNGEIANYILKDKFKDALLAAENYRQIFGEHNFYLEIME 180

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++      +++++    +P+ ATN+  +L+ ED E+H+VL+ +     +   DR R
Sbjct: 181  NGLPEQKTANEGLLEISRQLSIPVAATNDCHYLNREDAESHEVLLCIQTGKTLDDSDRMR 240

Query: 248  VTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + D  Y ++  +M  +F+  PEA+ENT EIA RC+   +     LP+F         + 
Sbjct: 241  FSTDAFYFRSPDDMKQLFNYCPEAVENTKEIADRCNLSFEFGKFYLPKFEV----SSDET 296

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQ-DYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E+ L   A+ GL  R+      +G   +  Y +RL  EL +I  M F+GYFLIV+DF+ 
Sbjct: 297  LEDRLEKVAIQGLAERMPPIVDERGEEVRGIYEKRLADELKIIKSMGFAGYFLIVSDFVS 356

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK+ NIPVGPGRGS AGS+ AYALTITDIDP+R+ L FERFLNPDR+SMPD DIDFC +
Sbjct: 357  YAKRMNIPVGPGRGSAAGSLVAYALTITDIDPIRYDLFFERFLNPDRISMPDIDIDFCPE 416

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             R ++IRYV  KYG ++V+QIITFG +QA+A +RDVGRAL +PY +VD + KL+PN    
Sbjct: 417  GRGDIIRYVTEKYGEDKVSQIITFGKMQARAVIRDVGRALNIPYGEVDSIAKLVPNILNI 476

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +    +  + R +EA   D  + +LL++S+ LEGL RHAS HAAG+VI D PL + VP+
Sbjct: 477  SLDDA-MEMEPRLQEAAKRDEKIRKLLKLSKSLEGLNRHASVHAAGVVISDVPLVERVPL 535

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
            Y+  + D+    F+M  +   GL KFDFLGLKTLT+++ +L F+ +  G  +DL  +P +
Sbjct: 536  YKSPKDDVTTQ-FSMNDLSTVGLTKFDFLGLKTLTVIKNALSFIKEGLGTDLDLKNLPLN 594

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL+   T G+FQLES GM++ L  M+PDCIED+IAL++LYRPGP++ I  +  R
Sbjct: 595  DADTFKLLSKGETDGVFQLESDGMKEILVRMKPDCIEDLIALIALYRPGPMNMIPEFIAR 654

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K GK  I+     ++ +LKET GVI+YQEQVMQIA +++ YS+SEAD LR+ MGKK   +
Sbjct: 655  KQGKTPIIYEIDQLEGILKETYGVILYQEQVMQIASVIAQYSMSEADTLRKVMGKKDTAK 714

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M+ ++ +F+ GA  NGI +     I+E +  FA YGFNKSH+ AYA+++YQTA++K HYP
Sbjct: 715  METERPKFMEGAKANGIPEQKTRKIWEQMETFASYGFNKSHSTAYAMVTYQTAYLKAHYP 774

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEF+AA +T E DN +KI K+    ++  I I+PP +N    DF V  NRI + LAAIK 
Sbjct: 775  VEFMAALLTSEKDNRDKIIKYIHVCKEMGIAILPPDINESQRDFSVAGNRIRFGLAAIKN 834

Query: 845  VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG      ++ +      F S EDFC+R D KK+N+RVLESL+  GA D  G  R QL+ 
Sbjct: 835  VGLGAIDAMISSRQKGGEFLSFEDFCNRTDLKKVNKRVLESLIKCGAFDSTGQRRRQLMS 894

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK------ITLEKFSVENSSVRFENEQR 957
              +NI + +Q  +K++ +K  + F   +    ++       +  +    +      +E+ 
Sbjct: 895  EYENIIEISQKRQKDKASKQASFFDDMEDLGVEEKRSYANSSAAEIQEWDPKELLAHEKE 954

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             LGFY +GHPL+ Y   +  +        +       + LA +V   ++  TRK   + +
Sbjct: 955  FLGFYVTGHPLEGYASKISMVANTDSAGILEKGDKEPVSLAGIVSGIREVFTRKKEIMAY 1014

Query: 1018 VTFSEPAKEYEANFFP 1033
            V+  +     +  FFP
Sbjct: 1015 VSLEDLKGATDVIFFP 1030


>gi|167465076|ref|ZP_02330165.1| DNA polymerase III DnaE [Paenibacillus larvae subsp. larvae
            BRL-230010]
          Length = 1218

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1058 (35%), Positives = 600/1058 (56%), Gaps = 44/1058 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
             SFVHL VHS YSLL+GA  ++++ ++ A     A+A+TD   ++  + F +     GI+
Sbjct: 2    SSFVHLHVHSEYSLLDGAARIHDLTERAAELGMSALALTDHGVMYGTIAFYKACKQRGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC++        +  N+ + P   +  ++LL     GY+ L++L S  +L +     
Sbjct: 62   PIIGCEVYFTTGSIRQKGNRQEQP---IYHLILLAKNNTGYRNLMKLCSIGHL-EGFHYK 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L    +EGLI L+      + +    +  + A K    ++ +FG+  Y+ +Q 
Sbjct: 118  PRIDAEHLAA-HSEGLICLSACLGSEVSQHLLHDRKEDARKAAERYRSIFGEDFYLEIQD 176

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++      +++L+    +PL+ATN+  ++ E D+E  DVL+ +     V  +DR +
Sbjct: 177  HGMMEQKKVMHSMIELSRETGIPLIATNDVHYVREPDHEVQDVLICIGTGKTVEDEDRLK 236

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + T   YLK R  M ++F+ +PEA+ NT ++A +C   +++   ILP F   E       
Sbjct: 237  MGTSQLYLKTREAMAALFAHVPEAVLNTEKVAAQCQVEIELGHSILPSF---EPIPESLT 293

Query: 307  EENELRNKAVA---GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                L+   +    G      +         +   Q+L +EL+VI  M FS YFLIV DF
Sbjct: 294  AAEYLKQLCLEGISGRYGTRQEWNDPSSDFRKQVEQKLYYELDVIESMGFSDYFLIVWDF 353

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++A +  I  GPGRGS AGS+ AYAL ITD+DP+ ++LLFERFLNP+R++MPD DIDF 
Sbjct: 354  IRYAHEQGIMTGPGRGSSAGSLVAYALNITDVDPIEYNLLFERFLNPERITMPDIDIDFN 413

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RRDEVI YV  KYG ERVAQIITFG++ AKAA+RDVGR L +PY++VD+  KLIPN  
Sbjct: 414  DERRDEVIDYVVRKYGKERVAQIITFGTMAAKAAVRDVGRVLNLPYNEVDKAAKLIPNHL 473

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +   A+  +S  RE     P    LL +++++EG+ RHASTHAAG+VI   PL+  V
Sbjct: 474  GMTID-HALEVNSDLRELAEKQPKTAELLNMAKRVEGMPRHASTHAAGVVISRDPLTDYV 532

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIP 602
            P+  +     P+TQ++M+ +E  GL+K DFLGL+TL++++++L     Q G  VD +   
Sbjct: 533  PLQ-EGTEQTPLTQYSMEHLESIGLLKIDFLGLRTLSIIERTLAWIKEQEGKLVDWTQTD 591

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
              D +TY LL+   T G+FQLES GMR+ L+ ++P   EDII++++LYRPGP++ I  Y 
Sbjct: 592  KSDPKTYELLSRGETTGVFQLESPGMRRVLKELKPSRFEDIISVLALYRPGPMEFIPQYI 651

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              K+ + + V  HP ++ +LK+T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +
Sbjct: 652  ACKHKQTEPVYPHPSLETILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKKR 711

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E +D+Q+  F+ G+   G +   A ++++++ +FADYG+ ++HA AY V+++QTA++K H
Sbjct: 712  EVLDEQRSHFVEGSLGQGFTAEEANHVYDMIVRFADYGYPRAHATAYGVLAFQTAYLKAH 771

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK------------- 829
            YP  F+A+ +T    N  K+ ++  + R+  + ++PP +N   V F              
Sbjct: 772  YPRHFMASMLTAVTGNQRKMAEYVDECRRMKLDVLPPDINESGVLFTPVASPGFGTEPAR 831

Query: 830  --------------VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                            +  I + LAAIK VG +    +++    + F SL DFC RVD +
Sbjct: 832  YAGEPAEEGMADKIPVNGAIRFGLAAIKNVGASAIEAVLKERRKETFTSLLDFCRRVDLR 891

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
              N+RV+ESL+ AGA D     R QL+  LD+  + A    K + +   ++F   +    
Sbjct: 892  ICNKRVIESLIQAGAFDTLPGHRAQLVAMLDDTAEAALKWRKEKDDLQLHLFGFVEEPHW 951

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
             ++ +    +     + + E+ ++G Y SGHPLD ++ +L ++      +       + +
Sbjct: 952  -EVEVPDVPMLTKLQQLDYERELIGMYLSGHPLDAHEDLLGRLEADPLYQLQEYPDHSEV 1010

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +A MV S +   T++G  + ++   +   + E   FP
Sbjct: 1011 VVAGMVASSKTIVTKRGEPMAFMELEDRIAKVEIVLFP 1048


>gi|154253636|ref|YP_001414460.1| DNA polymerase III subunit alpha [Parvibaculum lavamentivorans DS-1]
 gi|154157586|gb|ABS64803.1| DNA polymerase III, alpha subunit [Parvibaculum lavamentivorans DS-1]
          Length = 1139

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 534/1032 (51%), Positives = 698/1032 (67%), Gaps = 15/1032 (1%)

Query: 5    LEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +  SP  F+HL++HS+YSLLEGA+ + +I     A+  PAIA+TDT NLF ALEFS+   
Sbjct: 1    MSDSPPKFIHLRLHSAYSLLEGAIRIKDIPKLCKANGMPAIALTDTANLFGALEFSETLA 60

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
              GIQPI GC L + + D      +G        ++ LL     GY+ L++L S  +L  
Sbjct: 61   KEGIQPITGCTLPVLL-DTSDEPTRGPIRREPSGNLALLAKDERGYENLMKLSSLAFLGP 119

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
               +   + +  ++E   EGLI LTGG  G ++R         A + LL  K++FGDRLY
Sbjct: 120  DAAEPAHVTMEKVEEF-QEGLICLTGGPDGLVNRLIEAGQPDAAAELLLRLKRIFGDRLY 178

Query: 184  VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            V LQRH    ++  E  +++LAY HELPLVATN   F  E +YEAHD L+ +A    V Q
Sbjct: 179  VELQRHDLPREQIVEGPLIELAYKHELPLVATNEPYFTRESEYEAHDALICIAAGAYVVQ 238

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             DR R+TP H  K++ EM ++F+DLPEA+ENTVEIARRC++  Q   PILP+F       
Sbjct: 239  SDRRRLTPQHRFKSQDEMAALFADLPEAIENTVEIARRCAYRPQTRNPILPKFA------ 292

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                E +ELR +A  GL +RLA   +      ++YR RL+FEL+VI +M F GYFLIVAD
Sbjct: 293  AGTSEADELRRQAEEGLTMRLA--TLEAVAPEEEYRARLNFELDVIIKMDFPGYFLIVAD 350

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK   IPVGPGRGSGAGSV A+ALTITD+DPLRF LLFERFLNP+R+SMPDFDIDF
Sbjct: 351  FIKWAKGQGIPVGPGRGSGAGSVVAWALTITDLDPLRFGLLFERFLNPERVSMPDFDIDF 410

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRRDEVIRYVQ +YG ++VAQIITFG LQA+A LRDVGR LQMPY QVDRLCKL+PN+
Sbjct: 411  CQDRRDEVIRYVQARYGEDKVAQIITFGKLQARAVLRDVGRVLQMPYGQVDRLCKLVPNN 470

Query: 483  PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA PV+  +AI  + R +E + AD +V +LLEI Q LEGLYRHASTHAAG+VIGDRPL +
Sbjct: 471  PAAPVTLPEAIKGEPRLQEEQRADETVAKLLEIGQSLEGLYRHASTHAAGVVIGDRPLDE 530

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVP+YRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L +++  LA+R +++DL  +
Sbjct: 531  LVPLYRDPRSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDRAVKLLARRDIQIDLLNL 590

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P  D +T+ +L    T+G+FQLESSGMR  L  ++ D  EDIIALV+LYRPGP+DNI  Y
Sbjct: 591  PLADEKTFAMLGRGETIGVFQLESSGMRDVLRKLEADRFEDIIALVALYRPGPMDNIPSY 650

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK+G EK   +HPL++P+LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 651  VKRKHGTEKPDYLHPLLEPVLKETHGVIIYQEQVMQIAQILSGYSLGEADLLRRAMGKKI 710

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K EM+ QKERF++GA    I K  A +IFEL+ KFA YGFNKSHAAAYA+++YQTAW+K 
Sbjct: 711  KAEMEAQKERFVTGAVAKQIDKAQAASIFELVDKFAGYGFNKSHAAAYALVAYQTAWLKA 770

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            ++PVEFLAASM+L++ N +K+  F Q+A +  +++  P +N     F V D  I Y+LAA
Sbjct: 771  NHPVEFLAASMSLDLGNTDKLGLFKQEAERLGLKVRRPCINRSEGLFGVADGEILYALAA 830

Query: 842  IKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK VG     HI+E      PF  L DF  R++ + +N+R  E+L  AGA D    +R Q
Sbjct: 831  IKNVGLQAMEHIVEVRREGGPFRDLFDFARRINPRLINKRTFENLARAGAFDALNPNRAQ 890

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +L + D +   A    + R +K   +F  E G  +    L          R   E   +G
Sbjct: 891  VLAAADLLLGTANVAAQERESKQVGLFGEESGVAAAHPALPAIEPWLPMDRLTEEFNAVG 950

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY SGHPLD Y+  L++ G+  Y E +        ++A  V +KQ++K++KG+   +++ 
Sbjct: 951  FYLSGHPLDDYRTALQRAGVVTYAELLGKTS-TAAKIAGTVTAKQERKSKKGNPFAFLSL 1009

Query: 1021 SEPAKEYEANFF 1032
            S+P  ++E   F
Sbjct: 1010 SDPTGQFEIVVF 1021


>gi|307317847|ref|ZP_07597285.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83]
 gi|306896609|gb|EFN27357.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83]
          Length = 1169

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 636/1030 (61%), Positives = 786/1030 (76%), Gaps = 6/1030 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS+YSLLEGAL L  I+ K  AD QPAI I DTNNLF+ALEFSQKA   G+Q
Sbjct: 21   PQFVHLRVHSAYSLLEGALPLKKIIGKAVADDQPAIGIADTNNLFAALEFSQKAADDGLQ 80

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTP-FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGCQL IDM+D  +   +G    F  +P+IVL+ +T +GY RL+ELVSR YL  +G Q
Sbjct: 81   PIIGCQLSIDMEDEAEGERRGHAHQFVKLPAIVLIAATEDGYARLVELVSRAYLEGEGHQ 140

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              RI  SWL   GT GLI LTG  +GP+D A    S  +AE RL    +LFGDRLYV LQ
Sbjct: 141  QTRISRSWLAAGGTTGLIALTGAGAGPVDMALKSGSPALAEARLQALIELFGDRLYVELQ 200

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RH  YDR  E++++ LAY  ++PLVATN + F S  DY+AHD LMAVAH+ +VS   R R
Sbjct: 201  RHGNYDRRHENRMIDLAYRLDIPLVATNEAFFPSPSDYDAHDALMAVAHNAMVSDDSRFR 260

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +TPDHYLK+R EM ++F+DLPEALENT+E+ARRCSF+L+   PILPRF     D  + E 
Sbjct: 261  LTPDHYLKSRKEMAALFADLPEALENTIEVARRCSFMLKTRGPILPRFTGASDDPEEAER 320

Query: 308  ENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 LR +A  GLE RLA+  +A GY  +DYR+RL FEL VI RMKF GYFLIVADFI+
Sbjct: 321  AEVAELRRQAEEGLEERLAKLGMAPGYKEEDYRERLAFELGVIQRMKFPGYFLIVADFIK 380

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK+++IPVGPGRGSGAGS+ AYALTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQD
Sbjct: 381  WAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDFDIDFCQD 440

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA+
Sbjct: 441  RREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPAN 500

Query: 486  PVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            P    +AI ++ R +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLSQLVP
Sbjct: 501  PTPLSKAIEEEPRLQEEAEKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSQLVP 560

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            MYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+ +RG+ +DL+ IP D
Sbjct: 561  MYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFVGKRGIHIDLASIPLD 620

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY  L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN R
Sbjct: 621  DPKTYETLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYNAR 680

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+E+I SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK E
Sbjct: 681  KHGEEEIESIHPKIDYLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKAE 740

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MDKQ+ RF+ GA KNG+SK  A  IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HYP
Sbjct: 741  MDKQRARFVDGAVKNGVSKPQADLIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYP 800

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAASMTL+M N +KI  F QDA +  IQ++ PSV T    F+ GDNRIYYSLAA+KG
Sbjct: 801  VEFLAASMTLDMSNTDKINDFRQDAMRLGIQVVAPSVQTSHRHFETGDNRIYYSLAALKG 860

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG +   HI+    D+PF SLEDFC R+D K LNRRV ESL+ AGA DCFGY R +L+  
Sbjct: 861  VGESAVDHIVAVRGDRPFASLEDFCLRIDPKLLNRRVFESLIAAGAFDCFGYDRAELIGG 920

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            LD I  +AQ  ++N+ +   ++F     T  +KI L  ++   +S +   E +VLGFY S
Sbjct: 921  LDRILGFAQRAQENKVSGQSDMFGAGAATGPEKIALSPYTPWLASEKLHREFQVLGFYLS 980

Query: 965  GHPLDVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             HPLD Y  +L KM ++ + +            RLA  V SKQ++KTR G+++G V FS+
Sbjct: 981  AHPLDTYNNLLAKMRVQTFADFSAAVKKGAAAGRLAGTVTSKQERKTRTGNKMGIVAFSD 1040

Query: 1023 PAKEYEANFF 1032
             + ++EA  F
Sbjct: 1041 ASGQFEAVLF 1050


>gi|322420562|ref|YP_004199785.1| DNA polymerase III subunit alpha [Geobacter sp. M18]
 gi|320126949|gb|ADW14509.1| DNA polymerase III, alpha subunit [Geobacter sp. M18]
          Length = 1156

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1033 (39%), Positives = 613/1033 (59%), Gaps = 18/1033 (1%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +HS YSLL+GA+ + ++L K+     PA+AITD  N+F  LEF  KA   GI+PI
Sbjct: 6    FVHLHLHSQYSLLDGAIRIGDLLKKVKDCHMPAVAITDHGNMFGTLEFFLKAKEKGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ I                 T   ++LL     G++ L  LVS  Y  D   +  R
Sbjct: 66   LGSEVYIAPHSRTLKQAPTAADPVTSYHLILLCENMTGFKNLSYLVSAGY-KDGFYRRPR 124

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L +   EGLI+L+    G +      N    A      + + F    Y+ LQ ++
Sbjct: 125  IDKELLLK-HKEGLIVLSACLQGEVAYLAGRNKMDEARDAASWYAENFPGSYYIELQENK 183

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              ++     +++++A    LPLVATN+  +L++ED  AH++L+ +     +S   R   +
Sbjct: 184  LPEQDIANKRLLEIAREMNLPLVATNDCHYLNQEDARAHEILLCIQTGKTMSDPTRMAFS 243

Query: 250  -PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + Y+K   EM   F   P+ALENTV+IA RC+          P +     +      +
Sbjct: 244  VDEFYVKTPEEMAKAFHYAPDALENTVKIAERCNLEFDFKTYYFPAYEAPPGE----TLD 299

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             +L  +A  GL +RL +  I           Y  RL  EL+ I +M F GYFLIVADFI 
Sbjct: 300  QQLEREATEGLVLRLEKIRIKYNLTEDQEKGYWDRLRIELDCIRQMGFPGYFLIVADFIN 359

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK + IPVGPGRGS AGS+ A+ + ITDIDP+ ++LLFERFLNP+R+SMPD D+DFCQD
Sbjct: 360  WAKDHGIPVGPGRGSAAGSLVAFCIRITDIDPMPYNLLFERFLNPERISMPDIDVDFCQD 419

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG E+V QIITFG++ A+  +RDVGRAL + +  VD++ KL+P     
Sbjct: 420  RREEVIQYMVEKYGREKVCQIITFGTMAARGVIRDVGRALDLTFGDVDKIAKLVPEVLGI 479

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +    +  + + +E   ADP V  ++ ++ +LEGL RHASTHAAG+V+  R + +  P+
Sbjct: 480  TLEKA-LEQEPKLKELMDADPKVKEVMTVALRLEGLARHASTHAAGLVVAPRQMEEFCPV 538

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
            Y+D ++    TQ++MK++EK GL+KFDFLGLK LT++  +   +   +    D++L+  D
Sbjct: 539  YKDQKTGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIDNACKHIRAGKDPNFDITLLRDD 598

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662
            D E+Y LL    T G+FQLESSGM++ L  ++P C EDIIA+ +LYRPGP+ + +   + 
Sbjct: 599  DEESYKLLQAGNTTGVFQLESSGMKELLVKLKPSCFEDIIAVCALYRPGPLGSGMVDDFI 658

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G+++ V   P ++P+LK+T GVI+YQEQVMQI++ L+GYSL  AD+LRRAMGKK  
Sbjct: 659  ERKHGRKQTVYDLPQLEPVLKDTYGVIVYQEQVMQISRSLAGYSLGGADLLRRAMGKKDA 718

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E+M K++++F+ G+ K G+       IF+L+AKFA+YGFNKSH+AAYA+++YQTA++K H
Sbjct: 719  EQMAKERDKFLIGSEKLGLDSKKCAAIFDLMAKFAEYGFNKSHSAAYALVAYQTAFLKAH 778

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YPVEF+AA +T +M N +K+ K   D R+  I+++PP +N     F+V +  + + L A+
Sbjct: 779  YPVEFMAALLTEDMANTDKVVKSIGDCREMGIEVLPPDINESLRSFRVLEKAMRFGLGAV 838

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            K VG      I+EA  D+PF  + DFC RVD +++N+RV+E+L+  GA DC G  R QL+
Sbjct: 839  KNVGEGAIEAIIEARGDEPFKDIFDFCERVDQRRVNKRVIEALIKCGAFDCTGAKRAQLM 898

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTFSDKITLEKFSVENSSVRFENEQRVL 959
             +L++     Q V++ R +   ++F   +   G+      L      +   R   E+  +
Sbjct: 899  AALEDAAVNGQRVQQERESAQASLFGAAEIQRGSNGSGNRLPDIPEWDEKYRLGCEKEAI 958

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            GF+ +GHPLD Y   +R+         +     + I++  +  S ++  T+KG R+G+V 
Sbjct: 959  GFFITGHPLDRYVADMRRFSSVDCTSILEAKEKSEIKICGVPTSLKEIMTKKGDRMGFVA 1018

Query: 1020 FSEPAKEYEANFF 1032
              +     E   F
Sbjct: 1019 LEDLVGSVEVVVF 1031


>gi|210621647|ref|ZP_03292734.1| hypothetical protein CLOHIR_00679 [Clostridium hiranonis DSM 13275]
 gi|210154667|gb|EEA85673.1| hypothetical protein CLOHIR_00679 [Clostridium hiranonis DSM 13275]
          Length = 1192

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1066 (36%), Positives = 601/1066 (56%), Gaps = 57/1066 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +EK+  F HL VH+ YSLL+G   +  ++ +       A+AITD   +F A++F + A A
Sbjct: 4    MEKN--FTHLHVHTEYSLLDGFSRVKTLVKRAKEKGMTAVAITDHGCMFGAIDFYKAAKA 61

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIGC++    +   K+T++          +VLL     GY+ LI++VS+ Y +D 
Sbjct: 62   EGIKPIIGCEVYTAPR---KLTDKDPNYDKHQGHLVLLAKDMVGYKNLIKIVSKSY-VDG 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLY 183
                 R  +  L++  ++GLI L+   +G + RA    +   A K  + ++ +FG+   Y
Sbjct: 118  FYYKPRTDMDELKK-HSQGLIALSACLAGDVPRAIMNGNYDKARKLAMEYRDIFGNGNYY 176

Query: 184  VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H   ++    ++VV+L+    +PLVATN+  ++ ++D +  D+LM +     +  
Sbjct: 177  LEIQDHGLPEQKQVNTEVVRLSRELNIPLVATNDVHYVDKDDAKIQDILMCLQMQKTIDD 236

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            ++R +  + + YLK+R EM  +F +L EAL+NT EIA RC+   + H   LPR+   E  
Sbjct: 237  ENRMKFPSDEFYLKSREEMEQLFPELEEALDNTNEIAERCNVEFEFHKYHLPRYDVPEG- 295

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                      R     GL  R  +         ++Y++RL++ELN I  M +  YFLIV 
Sbjct: 296  ---YTTNGYFRELCQKGLVERYGEDC------PEEYKERLEYELNTIENMGYVEYFLIVW 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI +AK+NNI VGPGRGS AGS+ AY L ITDIDP+++SLLFERFLNP+R+SMPD DID
Sbjct: 347  DFINFAKQNNIMVGPGRGSAAGSIVAYTLKITDIDPMKYSLLFERFLNPERVSMPDIDID 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RR+EVI YV+ KYG + VAQIITFG++ AK A+RDV R L + Y++ D++ K IP 
Sbjct: 407  FCYERREEVIDYVKRKYGEDHVAQIITFGTMGAKIAIRDVARVLNVSYNKADQIAKEIPF 466

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +  +A+  +    E   +D     +++IS++LEG  RHASTHAAG+VI   P+ +
Sbjct: 467  ELGMTID-KAMDSNPTLVELYESDAEAREVIDISKRLEGTLRHASTHAAGVVIARNPVDE 525

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV------K 595
             VP+Y+    D   TQF M  +E+ GL+K DFLGL+TLT+++ +LD +            
Sbjct: 526  YVPLYK--HQDSITTQFTMTTLEELGLLKMDFLGLRTLTVIRDALDLIELNRDIKGYTEH 583

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D S + +DD E +  L+   TLG+FQLESSGMR  ++ ++P+  EDI+A +SL+RPGP+
Sbjct: 584  IDFSKMEYDDDEVFETLSQGNTLGVFQLESSGMRNFMKQLKPNSFEDIVAGISLFRPGPM 643

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D+I  Y   KN  EK+  I+  + P+L+ T G ++YQEQVMQ+ + L+GYS   +D++RR
Sbjct: 644  DSIPTYIENKNNPEKVTYINDKLRPILEVTYGCLVYQEQVMQVVRDLAGYSYGRSDLVRR 703

Query: 716  AMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNK 763
            AM KK  + M+++++ FI             G  +NGIS+  A  IF+ +  FA Y FNK
Sbjct: 704  AMSKKKMDVMEEERQYFIHGKFDDEGNIEIPGCIRNGISEEDANKIFDDMIDFARYAFNK 763

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAAAY V++Y+TA++K HYPVEF+AA MT  M N +K+ ++ ++     I + PP +N 
Sbjct: 764  SHAAAYGVLAYETAYLKVHYPVEFMAALMTSIMGNSDKVVEYIRECNAIGIPVNPPDINK 823

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVL 882
                F V  + I + LAA+K VG     +I++    +  F    DF  R+D+K  N+RV+
Sbjct: 824  SFSKFSVEGDSIRFGLAAVKNVGVNIIENIVKEREENGEFKDFVDFAKRLDTKDTNKRVV 883

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT--- 939
            ESL+  GA D    +R  L+   +++ +      K       ++F        +      
Sbjct: 884  ESLIKCGAFDQISENRATLMAGYESVLESISMDRKKNVQGQISLFDAFSTQVEEAPEMQL 943

Query: 940  ---LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI------ 990
               L      +   R   E+ VLG Y SGHPL  YK  L +      ++           
Sbjct: 944  STNLPVVREFSEKERLNMEKEVLGMYLSGHPLSEYKSELDRKTSINMKKINELKEDEKTY 1003

Query: 991  ---RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   + +  MV++K+   T++   + ++T  +     E   FP
Sbjct: 1004 MKLHDREVIMGGMVIAKRIMTTKRNEIMAFITLEDLYGTIEVVVFP 1049


>gi|225028022|ref|ZP_03717214.1| hypothetical protein EUBHAL_02291 [Eubacterium hallii DSM 3353]
 gi|224954622|gb|EEG35831.1| hypothetical protein EUBHAL_02291 [Eubacterium hallii DSM 3353]
          Length = 1160

 Score =  820 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1047 (35%), Positives = 579/1047 (55%), Gaps = 39/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +  +L +       ++AITD   ++  ++F +KA   GI+P
Sbjct: 2    AFTHLHVHTEYSLLDGSSKIKELLPRAKELGMDSLAITDHGVMYGVIDFYKKAKEVGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +          +          +VLL    +GY+ L+++V+R +  +      
Sbjct: 62   ILGCEIYVAPGSRFDR--EQGRGEDRYYHLVLLAENNQGYKNLMKIVTRGFT-EGYYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+    L++   EG+I L+   +G I           A       + +FG+   ++ LQ 
Sbjct: 119  RVDYEVLEKYH-EGIIALSACLAGEIPNKILKEDFDGARAAANKMRDIFGENNFFLELQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +    + +++L+    +P+V TN+  ++ EED   HD+L+ +     VS +DR R
Sbjct: 178  HGIRQQTQVNTSLIRLSRELGIPMVVTNDVHYIREEDAVPHDLLLCIQTGKKVSDQDRMR 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +YLK+  EM  +F    EA++NT +IA RC+  +      +P+F   E  D    
Sbjct: 238  YEGGQYYLKSEEEMQKVFPYAREAMDNTHKIAERCNVEIVFGEQKVPKFDVPEGYD---- 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L+     GL  R            Q+ ++RL +EL+ I  M +  YFLIV DFI++
Sbjct: 294  AFSYLKELCETGLVKRYGDP------PPQELQERLSYELSTIKNMGYVDYFLIVWDFIRF 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   I VGPGRGS AGS+ +Y L IT+IDP+R+ L+FERFLNP+R+SMPD DIDFC +R
Sbjct: 348  AKSQGIAVGPGRGSAAGSIVSYCLEITNIDPIRYQLIFERFLNPERVSMPDIDIDFCYER 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG ++V QI+TFG++ A+ A+RDVGR L +PY QVD + K+IP +    
Sbjct: 408  RQEVIDYVYEKYGKDKVVQIVTFGTMAARMAVRDVGRVLDIPYVQVDNVAKMIPMELGIT 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   ++A  +D  V  L+++S +LEGL RH S HAAG+VIG +PL + VP+ 
Sbjct: 468  IE-KALKSNPELKQAYESDDVVKNLIDMSMRLEGLPRHTSIHAAGVVIGSKPLDEFVPLS 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            R    ++  TQF M  IE+ GL+K DFLGL+TLT++Q +   + ++ G    +  I +DD
Sbjct: 527  RGA-DNVITTQFTMTTIEELGLLKMDFLGLRTLTVIQDAARMIGKKLGHDFSIDTIDYDD 585

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             + Y ++    T G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y   K
Sbjct: 586  AKVYEMIGQGKTEGVFQLESAGMKSFMKELKPTNLEDVIAGISLYRPGPMDFIPKYIKGK 645

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
              ++ I    P ++ +L  T G I+YQEQVMQI   L+GY+L  +D++RRAM KK  + M
Sbjct: 646  QNQDSIQYTCPELEEILAPTYGCIVYQEQVMQIVMRLAGYTLGRSDLVRRAMSKKKGDVM 705

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             ++++ F+         G  K GI +  A  IF+ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 706  ARERQNFVYGNEEEGVEGCIKRGIPEETANKIFDEMIDFAKYAFNKSHAAAYAVVSYQTA 765

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W++ +YPVEF+AA +T  + N +KI ++    R   I I+PP +N   V F V  + I Y
Sbjct: 766  WLRCYYPVEFMAALLTSVITNPKKITEYINTCRVMGISILPPDINEGEVGFSVAGDSIRY 825

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LAAIK +G +    + +   A+  +  L+DF  R+ SK++N+R +E+L+ +GALD FG 
Sbjct: 826  GLAAIKSLGKSVIDVMTQEREANGKYKDLKDFMGRLTSKEINKRTIENLIKSGALDSFGK 885

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     + +     +K   +   ++F    E+     ++        + + +   
Sbjct: 886  TRKQQMLVYPVVLEQVNREKKESMSGQMSLFDFFSEEEKKEYEMQYPDVGEYDDAQKLAL 945

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------TIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPL+ Y   + K       +              G +  +  ++ +   
Sbjct: 946  EKDVLGIYVSGHPLEKYMDSIEKQTTARSTDFEPDEESGRAIVRDGQHYVVGGLISNITA 1005

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + +VT  +     E   FP
Sbjct: 1006 KLTKNNQNMAFVTLEDLYGTVEIIVFP 1032


>gi|317132302|ref|YP_004091616.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense YUAN-3]
 gi|315470281|gb|ADU26885.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense YUAN-3]
          Length = 1174

 Score =  820 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1048 (37%), Positives = 589/1048 (56%), Gaps = 41/1048 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              FVHL +HS YSLL+GA  + +I  +     Q A AITD   ++  ++F + A  AG++
Sbjct: 2    SGFVHLHLHSEYSLLDGACRIGDIPARAKELGQAAAAITDHGVMYGVMDFYKAARKAGVK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC++    +           P  +   +VLL    +GY+ LI LVS+ ++ D     
Sbjct: 62   PIIGCEVYTAARTRHDKQYH---PDASHGHLVLLCENMQGYRNLIRLVSQAFI-DGFYGK 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
             R+    L +   EGLI L+   SG + +     +   A  ++  +  LFG D  Y+ LQ
Sbjct: 118  PRVDWDLLTQYH-EGLIALSACLSGEVPKLLLAGNEAGARAKVEAYAALFGEDHFYLELQ 176

Query: 188  RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   ++ R  + ++++A    LPLVATN++ +L +ED     +L+ +  +  V +    
Sbjct: 177  DHGMPEQQRVNAGLLEIARVSGLPLVATNDAHYLRKEDAYLQKMLLCIQTNRTVDEPGVG 236

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + Y+K+  EM ++F  +PEA +NTV IA+RC+        ILP F         +E
Sbjct: 237  FPTDEFYMKSEEEMRALFPQVPEACDNTVAIAKRCNVEFTFGKTILPHFEVPGG----QE 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR  A  GL  R               ++RLD+EL+VI RM +  Y+LIV DFI+ 
Sbjct: 293  HGAYLRGMAERGLADRYGPQPD------DTVKERLDYELDVITRMGYVDYYLIVHDFIRH 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+  IPVGPGRGSGAGS+ AY + IT IDP+R+ LLFERFLNP+R+SMPDFDIDFC +R
Sbjct: 347  AKEAGIPVGPGRGSGAGSLVAYCVGITGIDPMRYHLLFERFLNPERISMPDFDIDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG + VAQIITFG++ A+AA+RDVGRA+ +PY++VDR  K++P +    
Sbjct: 407  RQEVIDYVVRKYGSDHVAQIITFGTMAARAAIRDVGRAMGVPYAEVDRTAKMVPAELGMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+      R    AD +V RLL+ ++ LEG+ RHASTHAAG+VI   P+   VP+ 
Sbjct: 467  I-AKALEHSEDLRTRYDADETVRRLLDTAKGLEGMPRHASTHAAGVVITRDPVDSYVPLQ 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
            ++   +  VTQF M  +E+ GL+K DFLGL+TLT+++ + + +  Q      +  I  +D
Sbjct: 526  KN--DESIVTQFTMTTLEELGLLKMDFLGLRTLTVIRYAENRIREQYVPDFSIEQIALND 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
            H  Y +L +  T G+FQ ES GMR  +  + P+ +ED+IA++SL+RPGP+++I  Y   +
Sbjct: 584  HAVYDMLGSGNTEGVFQFESPGMRHTIMELGPEHMEDLIAVISLFRPGPMESIPRYIENR 643

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +  EK+   HPL+  +L  T G I+YQEQVM+I + L GYS   AD++RRAM KK    M
Sbjct: 644  HHPEKVAYRHPLLKDILDVTYGCIVYQEQVMEIVRKLGGYSYGRADLVRRAMAKKKAAVM 703

Query: 726  DKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
             ++++ F              GA +NG+ ++ A  IF+ ++ FA Y FNKSHAAAYA++S
Sbjct: 704  QQERDHFIHGLRREDGTFECVGAVRNGVDESTANAIFDEMSSFASYAFNKSHAAAYALVS 763

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++K HYP E+ AA +T  ++N  K+ ++  +  + +I I+PP VN     F V  N
Sbjct: 764  YQTAYLKCHYPKEYFAALLTSVLENSAKVSEYINECVRLHIGILPPDVNESMNGFTVSGN 823

Query: 834  RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I + L A+K +G    R ++   A + PF S  DF  R     LNRR+LESL+  GA D
Sbjct: 824  NIRFGLDAVKNLGRGFIRSLVRERAENGPFASFRDFVRRALPYDLNRRMLESLIKCGAFD 883

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
               Y R QL+   + +    +   KN  +   ++F         +  L+         R 
Sbjct: 884  SLHYKRRQLMLGYEALLAQEETTRKNNLSGQVSLFGTPAAPTDKQENLKDAEEFAPRERL 943

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGY-------EESVATIRGNNIRLAAMVVSKQ 1005
              E+ VLGFY +GHP++ Y+  +R++ +          E       G ++ LA +V SKQ
Sbjct: 944  AYEKEVLGFYLTGHPVERYRAAIRRLKLPSVGTILEHEEHISNDADGTSVSLAGIVQSKQ 1003

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K T+    + + T  + +   E   FP
Sbjct: 1004 TKITKNNETMAFCTLDDGSGTIELIVFP 1031


>gi|317052727|ref|YP_004113843.1| DNA polymerase III subunit alpha [Desulfurispirillum indicum S5]
 gi|316947811|gb|ADU67287.1| DNA polymerase III, alpha subunit [Desulfurispirillum indicum S5]
          Length = 1163

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1048 (39%), Positives = 612/1048 (58%), Gaps = 34/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA+ +  ++ K      PA+A+TD  N+F A++F ++   AGI+P
Sbjct: 2    SFVHLHLHTMYSLLDGAIKIPELVKKAKEYGMPAVAMTDHGNMFGAVDFYKQCTKAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +     ++     +  +     +VLL     GY+ LI +VS+ YL +      
Sbjct: 62   ILGCEVYVSPGS-MREKRNAEGVYEGAYHLVLLAENMTGYRNLIYMVSQGYL-EGFYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            RI    L+E  +EG+I L+    G +        ++ A +  L + ++FG+   ++ LQ 
Sbjct: 120  RIDKELLREC-SEGIIALSACLGGEVPNQLLAGDTEGARRSALEYLEIFGEGNFFLELQE 178

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   D+     Q++ LA    +P+VATN+  +L+ ED +AHD+L+ +   +    + R R
Sbjct: 179  NGMDDQRAVNRQLIALAEETGIPMVATNDCHYLNREDAKAHDILLCIQTQSNFDDEKRFR 238

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   Y K+   M   F  + +A+ NTV+IA RC+  L++    LP++        +  
Sbjct: 239  FDSDQLYFKSPETMHKDFGHIKDAIANTVKIAERCNVQLEMGKVYLPKYDIP----AEHT 294

Query: 307  EENELRNKAVAGLEVRLAQ-GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E+ +   +  GL  R AQ   +   Y    Y +RL+ EL+VI  M F GYFLIVADFIQ
Sbjct: 295  LESYIGEVSRKGLLERFAQFDRLGLTYDRPAYEERLEIELDVINSMGFPGYFLIVADFIQ 354

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            W K  +IPVGPGRGS AGS+ AYAL ITDIDP+ ++LLFERFLNP+R+SMPD DIDFC +
Sbjct: 355  WGKDQDIPVGPGRGSAAGSLVAYALKITDIDPIPYNLLFERFLNPERVSMPDIDIDFCMN 414

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV+ KYG + V QI+T+ SLQAK  LRDV R + +PYS  D+L KL+PN    
Sbjct: 415  RRGEVIDYVRKKYGDQNVCQIVTYASLQAKGVLRDVCRVMGLPYSDGDKLSKLVPNKLGI 474

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +AI+ + + +EA  A P  + LL+ S  LEGL+R A  HAAGIVI D P+    P+
Sbjct: 475  TLD-EAISMEPKLKEAAAAMPHGENLLKYSLALEGLFRQAGMHAAGIVITDEPIYTYAPL 533

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVDLSLIP 602
             R      PV QF+    E  GL+KFDFLGLKTLT++ ++  F+ Q      K D+S I 
Sbjct: 534  SRGP-EGEPVCQFDKDKAEDIGLVKFDFLGLKTLTVIDEACRFVQQTQKLPAKFDISAIA 592

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--V 660
             DD  TY LL +  + GIFQLES GMR  L  ++P   EDI+A+++LYRPGP+ + +   
Sbjct: 593  MDDQPTYDLLCSGKSAGIFQLESGGMRSLLTKLKPSNFEDIVAVLALYRPGPLGSGMVDD 652

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            + +RK G+ +I+ + P ++P+LK+T GVI+YQEQVMQIA+ + GYSL  AD+LRRAMGKK
Sbjct: 653  FVDRKQGRSEILYLFPELEPILKDTYGVIVYQEQVMQIARTIGGYSLGAADLLRRAMGKK 712

Query: 721  IKEEMDKQKERFIS-------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
             +EEM KQKE F+        GA   G     A  +F+L+A FA YGFNKSH+AAYA+++
Sbjct: 713  KEEEMVKQKEIFLHGDGDKVPGAKAMGFDLKKAEQVFDLMAYFAGYGFNKSHSAAYALVA 772

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++K HYP E +AA ++ EMDN +K+ +F  + +   +++ PP +N     F V ++
Sbjct: 773  YQTAYLKAHYPSELMAALLSCEMDNTDKVVQFINECKSMGLEVHPPHINLSGHSFTVDED 832

Query: 834  R--IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               I + L AIK VG+     I++    + PF SL DF  RVD + +N+RV+E+L+  GA
Sbjct: 833  GRSIIFGLTAIKNVGSKAVEAILQERQENGPFTSLYDFTERVDLRSVNKRVVENLIKCGA 892

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----AHEKGTFSDKITLEKFSV 945
             D    +R QL+ +LD+     Q ++K+R     ++F            S          
Sbjct: 893  FDSVHANRRQLIGALDHAFSLGQTIQKDREAGQISLFEMEAQDDSSDDLSHHEEYPDVED 952

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             N++ R   E+  LGF+ SGHPL+ ++ +L           +   +   +R+A ++ S Q
Sbjct: 953  WNTTTRVAFEKECLGFFVSGHPLEPFQSVLEGY-TTPIASVLEAQKKGRVRIAGVLSSLQ 1011

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K T+ G ++  +   +   + E   FP
Sbjct: 1012 PKTTKAGKKMAIIVVEDQTAKLEIPIFP 1039


>gi|315187035|gb|EFU20792.1| DNA polymerase III, alpha subunit [Spirochaeta thermophila DSM 6578]
          Length = 1136

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1032 (40%), Positives = 608/1032 (58%), Gaps = 23/1032 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL VHS YSLL+G++   +++ ++      A+A+TD  NLF  +EF +KA A
Sbjct: 1    MSTHP-FVHLHVHSDYSLLDGSIKTGDLVKRVKELGMDAVALTDHGNLFGMIEFYKKARA 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+ PI+GC+  +  +                  ++LL     GY  L++LV+  YL   
Sbjct: 60   AGVTPILGCECYVAPESRTLK----DQDHAANYHLILLAENYTGYLNLLKLVTESYLTG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 RI    L     EGLI L+    G I           A +R   ++ +FG DR Y
Sbjct: 115  FYYKPRID-DGLLAAHHEGLIALSSCLGGEIPSLILGRRIDKARERARFYRDIFGPDRFY 173

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ H   ++ R    +V+L+   ++PLVATN+  +L +E  EAH+VL+ +  +  +S 
Sbjct: 174  LELQDHGLSEQKRVNKALVELSKELDIPLVATNDVHYLLKEHAEAHEVLLCIGTNKKLSD 233

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            +DR R  T + YLK+  EM  +F  +PEALENTV IA RC+F +    P+LP +   E  
Sbjct: 234  QDRMRFETQEFYLKSPEEMARLFEGIPEALENTVRIAERCAFEIPFPGPLLPEYHIPEGF 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D     E  LR+    GL+ R  Q         ++ R+R D EL++I +M F+GYFLIV 
Sbjct: 294  D---SPEAYLRHLTYEGLKKRYHQ-------ITREIRERADLELSIIIQMGFTGYFLIVW 343

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DF+ +AK+  IPVGPGRGSGAGS+ AYAL IT+IDPL++ LLFERFLNP+R+SMPDFDID
Sbjct: 344  DFVHFAKEQGIPVGPGRGSGAGSIVAYALGITNIDPLKYGLLFERFLNPERISMPDFDID 403

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC  RR+EVI YV  KYG +RVAQIITFG+L+ KA ++DV R L +P+++ + L KL+ +
Sbjct: 404  FCYARREEVIDYVTRKYGKDRVAQIITFGTLKPKAVIKDVARVLGIPFAEANELTKLMGD 463

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
              +     +AI  + R       D +  RL +I   L+GL RHASTHAAGIVIG   L+ 
Sbjct: 464  ASSVE---EAIQREPRLARLAEEDETYTRLFQIGSVLQGLSRHASTHAAGIVIGREALTN 520

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
             VP+YRD ++    TQ++M+ +E  GL+K DFLGLKTLTL+  + + +       D   I
Sbjct: 521  YVPLYRDPKTGDISTQYSMEHLEDCGLVKMDFLGLKTLTLITHTEELVRTHTPDFDTERI 580

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD +T+ LL    +  +FQ ES GM+  L   +P+ IE++IAL +LYRPGP+  I  +
Sbjct: 581  PEDDAQTFQLLAEGKSTCVFQFESEGMQNILRRAKPESIEELIALNALYRPGPMQFIDQF 640

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K G+ KI   HP ++P+LKET GVI+YQEQVMQIAQ ++GY+L  AD+LRRAMGKK 
Sbjct: 641  IEAKQGRRKITYPHPDLEPILKETYGVIVYQEQVMQIAQKIAGYTLGGADILRRAMGKKK 700

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E M K+KE+FI GA   G S+  A  +FELL  FA YGFNKSHAAAY+V++Y+TA++K 
Sbjct: 701  PEVMAKEKEKFIKGAVAQGYSRQFAEELFELLIPFAGYGFNKSHAAAYSVLAYKTAYLKA 760

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP EF+AA++T E+ N +K+ ++  + R   I+++PP +N     F V D +I Y L  
Sbjct: 761  HYPAEFMAANLTNEIGNPDKLAQYIGETRAMGIEVLPPDINASERYFTVRDGKIVYGLVG 820

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IK VGT     I+    + PF S  DF  RVD + +NR+V+E+ + AG  D    +R +L
Sbjct: 821  IKNVGTAAVEEILGKRKEGPFTSFIDFLFRVDLRTVNRKVIETCIQAGVFDSLHPNRAEL 880

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            + +L+ +  +   +++ +      +F   +    ++         ++  +   E+ +LGF
Sbjct: 881  MHNLEALLAHVNRIKEQQEASQGFLFEETETQIREEFQFTPVEDWDTMEKLRYERELLGF 940

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            YFS HPLD  + I  K           T      +L  ++ + ++  T+KG+R+ + T  
Sbjct: 941  YFSSHPLDHLREIWEKGVNLDLSHPERTDPSRTYQLMGVLKTVREITTQKGNRMAFGTIE 1000

Query: 1022 EPAKEYEANFFP 1033
            +     EA FFP
Sbjct: 1001 DYRGSIEAVFFP 1012


>gi|312135078|ref|YP_004002416.1| DNA polymerase III subunit alpha [Caldicellulosiruptor owensensis OL]
 gi|311775129|gb|ADQ04616.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor owensensis
            OL]
          Length = 1140

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1033 (36%), Positives = 598/1033 (57%), Gaps = 30/1033 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA  ++ + +++      A+AITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHLHTEYSLLDGACRIDRLFERVKELNMNAVAITDHGAMYGVIDFYKAAKENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +               +  +VLL    +GY+ L  +VS  + ++      
Sbjct: 62   IIGCEVYLAPRTRFDKEA---NIDSDIHHLVLLAMDNDGYRNLSRIVSIGF-VEGFYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L +  ++GL+ LT   +G I +       +     +  +K++FG+  Y  LQ H
Sbjct: 118  RVDREVLSKY-SKGLVALTSCLAGEIPKFILREQKEKLYDAISFYKEVFGENFYFELQNH 176

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++    +++++L+  +++PLVATN+  +L  ED   HD+L+ +     +S  +R   
Sbjct: 177  YIDEQRFVNNELIRLSKKYQVPLVATNDVHYLKREDRNLHDILLCIQTGKTISDSNRMEF 236

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM  +F  +PEAL+NT+EIA +C+   +     LP+F   E  +   + 
Sbjct: 237  PTDEFYLKSPEEMHQLFGYIPEALKNTLEIAEKCNVEFEFGKINLPKFQLPEGKN---DP 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+  A  G +              +    RL  EL VI  M F  YFLIV DFI +A
Sbjct: 294  FEYLKELAFEGFKK-------RYSKDDKAAYDRLMMELQVIKDMGFVEYFLIVQDFINYA 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDFC  RR
Sbjct: 347  KQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDIDFCYQRR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP  P   +
Sbjct: 407  QEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGIPYSQVDEIAKMIPFSPGMTI 466

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                +  +   ++    + +V ++++ ++ LEG+ RHAS HAAG+VI + P++ LVP+  
Sbjct: 467  DKA-LEINHELKKIYEQNDTVRKIIDTARNLEGMPRHASVHAAGVVISNCPITDLVPL-- 523

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D  VTQF M  +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL  I ++D 
Sbjct: 524  ARTDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLDRIDYNDK 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y  ++   T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I VY   KN
Sbjct: 584  NVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIPVYIQNKN 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +EKI  +HP ++P+L  T G I+YQEQVMQI + L+GYSL  AD++RRAM KK  + + 
Sbjct: 644  NREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAKKKADILM 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            ++++RFI GA  NG+++  A  IF ++  FA Y FNKSHAAAYA+++YQTA++K +Y +E
Sbjct: 704  EERDRFIEGAVANGVNRETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYLKKYYTIE 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+ + +T  M++ EK+  + ++ R+F I I+PP +N    DF +  N I + L AIK +G
Sbjct: 764  FMTSLITSVMNSNEKVGMYIEECRRFGISILPPDINKSSYDFTIEGNSIRFGLRAIKSLG 823

Query: 847  TTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                 HI+    +   F  L DF  RVD+  +N+R++E+L+ +GA D  G +R  LL S+
Sbjct: 824  ENVIAHILSEREEKGTFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGINRNSLLASV 883

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            ++I        K +     + F    G  ++    +      +    + E+  +G Y S 
Sbjct: 884  EDIL--VLKQAKKKNANQFSFF-EISGNENESFEYKSLPQPTAQELMKMEKDSIGIYISS 940

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNN-----IRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            HPL+ Y   + +  +    E       +      I +  ++   + K T+    + +   
Sbjct: 941  HPLERYTEEISRYNVTPLSEISTMSEEDEYKFEQILVCGILKEVKVKLTKNNQTMAFGKL 1000

Query: 1021 SEPAKEYEANFFP 1033
             +     E  FFP
Sbjct: 1001 EDLTDSVEVLFFP 1013


>gi|167771346|ref|ZP_02443399.1| hypothetical protein ANACOL_02712 [Anaerotruncus colihominis DSM
            17241]
 gi|167665986|gb|EDS10116.1| hypothetical protein ANACOL_02712 [Anaerotruncus colihominis DSM
            17241]
          Length = 1175

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1044 (37%), Positives = 592/1044 (56%), Gaps = 31/1044 (2%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            L   +     F HL VH+ YSLL+GA  +  +++++ A  Q A+AITD   +F A++F +
Sbjct: 7    LCAVMT---DFAHLHVHTEYSLLDGACRIERLIERVKALGQSAVAITDHGVMFGAVDFYK 63

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A   G++PIIGC++ +  +      ++  T   +   ++LL     GYQ LI++VS  +
Sbjct: 64   CAKKHGVKPIIGCEVYVAPRSRFDKQHKIDT---SPYHLILLCKNETGYQNLIKMVSAGF 120

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179
             ++      RI  + L++   EGLI L+   +G I R         A++  + ++ LFG 
Sbjct: 121  -VEGFYSKPRIDRALLEQYH-EGLICLSACLAGEIPRMLAQGDYACAKETAVWYRDLFGA 178

Query: 180  DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            D  Y+ +Q H     +     +V+LA    + LVATN++ ++ + D     VL+ +  +T
Sbjct: 179  DNYYIEIQNHGIRLQQQILPDLVRLAGEIGVGLVATNDAHYIEKADARMQSVLICIQTNT 238

Query: 239  VVSQK-DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V    D    T + Y+K+R EM  +F + P AL+NT++IA +C+   +     LP F+ 
Sbjct: 239  TVDAPGDLEFETEEFYIKSRDEMDELFGNYPGALDNTLKIAEQCNVEFEFGNTKLPLFVA 298

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +D Q       R     GL  R  +             +RL++ELN+I +M +  Y+
Sbjct: 299  PNGEDNQ----AYFRRLCAEGLRRRYGEQPDRS------VTERLEYELNIITKMGYVDYY 348

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV+DFI +AK   IPVGPGRGSGAGS+ AY + IT IDPLR+SLLFERFLNP+R+SMPD
Sbjct: 349  LIVSDFINYAKSVGIPVGPGRGSGAGSLAAYCIGITGIDPLRYSLLFERFLNPERISMPD 408

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC +RR EVI YV  KYG + VAQIITFG++ A+ A+RDVGR L M Y QVD + K
Sbjct: 409  FDIDFCYERRQEVIDYVVRKYGADHVAQIITFGTMAARGAIRDVGRVLGMSYQQVDSIAK 468

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L+PN+    +    +A  +  +     D  V  LL++++K+EG+ RHASTHAAG+VI   
Sbjct: 469  LVPNELKMTLDKA-LAVSADLKTMCAEDKRVAELLDMARKIEGMPRHASTHAAGVVITRD 527

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            P+   VP+Y+     +PVTQF M  +E+ GL+K DFLGL+TLT++  +    A+      
Sbjct: 528  PVDSYVPLYKAE-ETMPVTQFTMTTLEELGLLKMDFLGLRTLTVISYAEKEAAKTHPGFS 586

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               +P DD ET+ +LT    +G+FQ ES+GMR  +  + P  IED+IA++SLYRPGP+++
Sbjct: 587  ADAVPLDDPETFAMLTKGQCVGVFQFESAGMRAVIAQLGPTSIEDLIAVISLYRPGPMES 646

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y   ++  E +   HPL+ P+L  T G I+YQEQVMQI + L GYS   AD++RRAM
Sbjct: 647  IPTYIRNRHNPELVTYKHPLLKPILDVTYGCIVYQEQVMQICRALGGYSYGRADLVRRAM 706

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             KK  + M+K++E F++GA +NG+++  A  IF+ ++ FA Y FNKSHAAAYA +SYQTA
Sbjct: 707  SKKKHDVMEKEREAFVAGAQQNGVARETANQIFDEMSSFASYAFNKSHAAAYAFVSYQTA 766

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HYP EF+AA +T  +DN +K+ ++  +  +  I+++PP VN     F V    I +
Sbjct: 767  YLKCHYPREFMAALLTSVLDNTDKVIEYIGECNRMGIKVLPPDVNVSVEGFTVSGEEIRF 826

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L A+K +G    R ++        F +  DFC R+  K +N+R +ESL+ +GALDC   
Sbjct: 827  GLLAVKNIGRGFIRELIAERESGGVFQNFSDFCERMYGKDMNKRAVESLIKSGALDCVCK 886

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R Q+L   + I       +K       N+F    G       L        S     E+
Sbjct: 887  NRNQMLSGYEAILDDIDSAQKRNIAGQINLFDTAAGASKPIHILPNVEELEPSKLLAMEK 946

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-------RGNNIRLAAMVVSKQQKKT 1009
               G Y SGHP+  ++ ++ K       +  +          G  +R+AA+V S++ K T
Sbjct: 947  ETTGLYISGHPMARFQEMVSKNNCTLIADITSAEERGSGVADGTQVRVAAIVNSRRLKST 1006

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
            R G  + +V   + +   E   FP
Sbjct: 1007 RGGEMMAFVRLEDTSGSMEMLVFP 1030


>gi|163759322|ref|ZP_02166408.1| DNA polymerase III subunit alpha [Hoeflea phototrophica DFL-43]
 gi|162283726|gb|EDQ34011.1| DNA polymerase III subunit alpha [Hoeflea phototrophica DFL-43]
          Length = 1189

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 605/1031 (58%), Positives = 772/1031 (74%), Gaps = 8/1031 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHSSYSLLEGAL +  ++ +  AD+QPA+AITDTNNLF ALEFS KA  AGIQ
Sbjct: 41   PGFVHLRVHSSYSLLEGALPIKTLIKRALADEQPALAITDTNNLFGALEFSIKAMEAGIQ 100

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            P+IGCQLDIDM+D      +        +PSIVL  STA GY+RL  LVSR YL     +
Sbjct: 101  PLIGCQLDIDMEDGAASERRSHRDQLQRLPSIVLYASTATGYERLTALVSRAYLEGDSVE 160

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I +SWL+E G +GLI LTG   GP+D+    +    A +RL   K +F DR+Y+ LQ
Sbjct: 161  RPHILMSWLEE-GADGLIALTGSVKGPVDQCIRESHPDRAAERLNRLKTVFEDRVYIELQ 219

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R +GYDR  ES+++ LAY  ++PLVATN + F + +D+EAHD LMAVA + V+S   RPR
Sbjct: 220  RQQGYDRAHESKMIALAYAADVPLVATNEAFFPTPDDFEAHDALMAVAANAVMSDDRRPR 279

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI---EKECDDIQ 304
            ++ D+ LK+R+EM ++F+D+PEAL NT+EIA+RCS I++   PILPRF    E++ D   
Sbjct: 280  LSVDNCLKSRAEMTALFADVPEALRNTIEIAQRCSAIVETRPPILPRFTGGGEEDPDAAL 339

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              E  ELR ++  GLE RL +  +A+GY   DYR+RL  EL++I  MKF GYFLIVADFI
Sbjct: 340  AAEAAELRRQSEEGLERRLERIGLAEGYTHDDYRERLKTELDIIENMKFPGYFLIVADFI 399

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP R+SMPDFDIDFCQ
Sbjct: 400  KWAKDHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPARVSMPDFDIDFCQ 459

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVIRYVQ KYG E+V QIITFGSLQA+AALRDVGR L+MPY  VDR+CKL+PN+PA
Sbjct: 460  DRREEVIRYVQKKYGREQVGQIITFGSLQARAALRDVGRVLEMPYGLVDRICKLVPNNPA 519

Query: 485  HPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +P    +AI ++ RF E    +P+V+RLL+I+QKLEGLYRHASTHAAGIVIGDRPLSQLV
Sbjct: 520  NPTPLNKAIEEEPRFAEEMEKEPAVERLLDIAQKLEGLYRHASTHAAGIVIGDRPLSQLV 579

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++ F+A+RG+ +DL  +P 
Sbjct: 580  PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVGFIAKRGITIDLEGLPL 639

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD IEDIIALV+LYRPGP++NI VYN 
Sbjct: 640  DDQPTYEMLSRGETVGVFQVESAGMRKALIGMRPDRIEDIIALVALYRPGPMENIPVYNA 699

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+E++ SIHP ID +L ETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKKIKE
Sbjct: 700  RKHGEEELASIHPKIDGLLAETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRAMGKKIKE 759

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMDKQ+ RF+ GA +  +SK  A  IF+LLAKFA+YGFNKSHAAAY ++SYQTA++K HY
Sbjct: 760  EMDKQRARFVEGAVERDVSKPQADMIFDLLAKFANYGFNKSHAAAYGIVSYQTAYLKAHY 819

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASMTL+M N +K+  F QDA++  I++ PPSV T    F+ G+NRIYY+LAAIK
Sbjct: 820  PVEFLAASMTLDMSNTDKLNDFRQDAKRLGIEVAPPSVQTSFRHFETGENRIYYALAAIK 879

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG     HI+E   D  F SLEDFC R+D +++NRRVLESL+ AGALDCFG  R  L+ 
Sbjct: 880  GVGDAAVEHIVEVRGDTEFASLEDFCVRIDPRQVNRRVLESLITAGALDCFGLDRAALVA 939

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             LD I  +AQ  ++NR +   ++F       ++ I L   +    + +   E + LGFY 
Sbjct: 940  GLDRILGFAQRAQENRISGQSDMFGAGASESAETIHLPDATPWLPAEKLHREYQALGFYL 999

Query: 964  SGHPLDVYKPILRKMGIKGYEESV-ATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            S HPLD Y  +L KM ++ + +   +   G    RLA  V SKQ++KT+ G+++G V FS
Sbjct: 1000 SAHPLDSYADLLNKMRVQNWADFQVSVKAGATAGRLAGTVTSKQERKTKTGNKMGIVAFS 1059

Query: 1022 EPAKEYEANFF 1032
            + + +YEA  F
Sbjct: 1060 DSSGQYEAVLF 1070


>gi|325292654|ref|YP_004278518.1| DNA polymerase III subunit alpha [Agrobacterium sp. H13-3]
 gi|325060507|gb|ADY64198.1| DNA polymerase III alpha subunit [Agrobacterium sp. H13-3]
          Length = 1166

 Score =  819 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 628/1032 (60%), Positives = 787/1032 (76%), Gaps = 6/1032 (0%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K+P FVHL+VHS+YSLLEGAL L  I+ K  AD QPAIAITDTNNLF ALEFS+KA   G
Sbjct: 16   KTPGFVHLRVHSAYSLLEGALPLKKIMSKAVADGQPAIAITDTNNLFVALEFSEKARDEG 75

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +QPIIGCQ+ IDMQD +       +    +P+IVLL + A GY+RL++L+SR YL  +  
Sbjct: 76   LQPIIGCQVSIDMQDAVDDRRNHNSHLAKLPAIVLLAADAGGYERLVDLISRAYLEGESG 135

Query: 127  Q-SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
              SV I  +WL+E    GLI+LTG S GP+D A     +  A +RLL  K LFGD+LY+ 
Sbjct: 136  GQSVHITRAWLEEASNAGLIVLTGASGGPVDMALKDGHTAQARERLLALKSLFGDKLYIE 195

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            LQR  G+DR  E +++ LAY H++PLVATN + F S  DYEAHD LMAVAH+ +VS   R
Sbjct: 196  LQRQSGFDRVHERRMIGLAYEHDIPLVATNEAFFPSRADYEAHDALMAVAHNAIVSDDSR 255

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R+TPDHY+K+R EM  +F+DLPEALENTVEIA RCS++L+   PILPRF     D    
Sbjct: 256  FRLTPDHYMKSREEMAELFADLPEALENTVEIAMRCSYVLKKRGPILPRFTGASDDPEAA 315

Query: 306  EEENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +      LR +AV GL++RLA   +A GY  Q+YR RLDFEL VI RM F GYFLIVADF
Sbjct: 316  QRAEAEELRRQAVEGLDLRLAALGMAPGYAEQEYRDRLDFELGVIERMGFPGYFLIVADF 375

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK+ +IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFC
Sbjct: 376  IKWAKQQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFC 435

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QDRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+P
Sbjct: 436  QDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNP 495

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A+P    +AI ++ R +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+L
Sbjct: 496  ANPTPLSKAIEEEPRLQEEADKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKL 555

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VPMYRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L+ ++DF+A+RG+KVDL+ IP
Sbjct: 556  VPMYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVDFVAKRGIKVDLAAIP 615

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN
Sbjct: 616  LDDAKTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYN 675

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G+E++ SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK
Sbjct: 676  ARKHGEEELESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIK 735

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            EEMD+Q+ERF+ GA +N +SK  A  IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK H
Sbjct: 736  EEMDQQRERFVDGAIRNSVSKPQANTIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAH 795

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YPVEFLAASMTL+M N EK+  F QDA +  I+++ PSV T    F+ G+NRIYYSLAAI
Sbjct: 796  YPVEFLAASMTLDMANTEKLNDFRQDASRLGIEVVAPSVQTSFRQFETGENRIYYSLAAI 855

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KGVG     HI+     KPF SLEDFC R+D K++NRRVLESL+ AG  DCFG  R +++
Sbjct: 856  KGVGEGAVEHIVTVRDGKPFASLEDFCLRIDPKQINRRVLESLINAGGFDCFGRDRAEMI 915

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              LD I  Y+Q  +++R     ++F     +  +K+ L  F    +S +   E +VLGFY
Sbjct: 916  GGLDRIIGYSQRAQESRVTGQSDMFGSGGASGPEKLILPAFQPWLASEKLLREYQVLGFY 975

Query: 963  FSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTF 1020
             + HPLD Y+P+L K+ ++ + +   A  +G    RLA  V  KQ++KTR G+++G VTF
Sbjct: 976  LTAHPLDTYRPVLEKLRVQNFADFSAAVKQGATAGRLAGTVTGKQERKTRTGNKMGIVTF 1035

Query: 1021 SEPAKEYEANFF 1032
            S+ + +YEA  F
Sbjct: 1036 SDASGQYEAVLF 1047


>gi|307718499|ref|YP_003874031.1| DNA polymerase III subunit alpha [Spirochaeta thermophila DSM 6192]
 gi|306532224|gb|ADN01758.1| DNA polymerase III subunit alpha [Spirochaeta thermophila DSM 6192]
          Length = 1136

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1032 (40%), Positives = 609/1032 (59%), Gaps = 23/1032 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL VHS YSLL+G++   +++ ++      A+A+TD  NLF  +EF +KA A
Sbjct: 1    MSTHP-FVHLHVHSDYSLLDGSIKTGDLVKRVKELDMDAVALTDHGNLFGMIEFYKKARA 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+ PI+GC+  +  +                  ++LL     GY  L++LV+  YL   
Sbjct: 60   AGVTPILGCECYVAPESRTLK----DQDHAANYHLILLAENYTGYLNLLKLVTESYLTG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 RI    L     EGLI L+    G I           A +R   ++ LFG DR Y
Sbjct: 115  FYYKPRID-DGLLAAHHEGLIALSSCLGGEIPSLILGRQIDKARERARFYRDLFGPDRFY 173

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ H   ++ R    +V+L+   ++PLVATN+  +L  E  EAH+VL+ +  +  +S 
Sbjct: 174  LELQDHGLPEQKRVNKTLVELSKELDIPLVATNDVHYLLREHAEAHEVLLCIGTNKKLSD 233

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            +DR R  T + YLK+  EM  +F D+PEALENTV IA RC+F +    P+LP +   E  
Sbjct: 234  QDRMRFETQEFYLKSPEEMARLFEDIPEALENTVRIAERCAFEIPFPGPLLPEYHIPEGF 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D     E  LR+    GL+ R  Q         ++ R+R D EL++I +M F+GYFLIV 
Sbjct: 294  D---SPEAYLRHLTYEGLKKRYHQ-------ITREIRERADLELSIIIQMGFTGYFLIVW 343

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DF+ +AK+  IPVGPGRGSGAGS+ AYAL IT+IDPL++ LLFERFLNP+R+SMPDFDID
Sbjct: 344  DFVHFAKEQGIPVGPGRGSGAGSIVAYALGITNIDPLKYGLLFERFLNPERISMPDFDID 403

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC  RR+EVI YV  KYG +RVAQIITFG+L+ KA ++DV R L +P+++ + L KL+ +
Sbjct: 404  FCYARREEVIDYVTRKYGKDRVAQIITFGTLKPKAVIKDVARVLGIPFAEANELTKLMGD 463

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
              +     +AI  + R       D +  RL +I   L+GL RHASTHAAGIVIG   L+ 
Sbjct: 464  ASSVE---EAIQREPRLARLAEEDETYTRLFQIGSVLQGLSRHASTHAAGIVIGREALTN 520

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
             VP+YRD ++    TQ++M+ +E  GL+K DFLGLKTLTL+  + + +       D   I
Sbjct: 521  YVPLYRDPKTGDISTQYSMEHLEDCGLVKMDFLGLKTLTLITHTEELVRTHTPDFDTERI 580

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD +T+ LL    +  +FQ ES GM+  L   +P+ IE++IAL +LYRPGP+  I  +
Sbjct: 581  PEDDAQTFQLLAEGKSTCVFQFESEGMQNILRRAKPESIEELIALNALYRPGPMQFIDQF 640

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K G+ KI   HP ++P+LKET GVI+YQEQVMQIAQ ++GY+L  AD+LRRAMGKK 
Sbjct: 641  IEAKQGRRKITYPHPDLEPILKETYGVIVYQEQVMQIAQKIAGYTLGGADILRRAMGKKK 700

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E M K+KE+FI+GA   G S+  A  +F+LL  FA YGFNKSHAAAY+V++Y+TA++K 
Sbjct: 701  PEVMAKEKEKFITGAVAQGYSRQFAEELFDLLIPFAGYGFNKSHAAAYSVLAYKTAYLKA 760

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP EF+AA++T E+ N +K+ ++  + R   I+++PP +N     F V D +I Y L  
Sbjct: 761  HYPAEFMAANLTNEIGNPDKLAQYIGETRAMGIEVLPPDINASERYFTVRDGKIVYGLVG 820

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IK VGT     I+    + PF S  DF  RVD + +NR+V+E+ + AG  D    +R +L
Sbjct: 821  IKNVGTAAVEEILGKRKEGPFTSFIDFLFRVDLRTVNRKVIETCIQAGVFDSLHPNRAEL 880

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            + +L+ +  +   +++ +      +F   +    ++         ++  +   E+ +LGF
Sbjct: 881  MHNLEALLAHVNRIKEQQEASQGFLFEETETQIREEFQFTPVEDWDTMEKLRYERELLGF 940

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            YFS HPLD  + I  K           T      +L  ++ + ++  T+KG+R+ + T  
Sbjct: 941  YFSSHPLDHLREIWEKGVNLDLSHPERTDPSRTYQLMGVLKTVREITTQKGNRMAFGTIE 1000

Query: 1022 EPAKEYEANFFP 1033
            +     EA FFP
Sbjct: 1001 DYRGSIEAVFFP 1012


>gi|120602759|ref|YP_967159.1| subunit alpha [Desulfovibrio vulgaris DP4]
 gi|120562988|gb|ABM28732.1| DNA polymerase III, alpha subunit [Desulfovibrio vulgaris DP4]
          Length = 1175

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1040 (40%), Positives = 604/1040 (58%), Gaps = 23/1040 (2%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E    FVHL  H+ YSLL+GA+ L ++  +       A AITD  NLF A  F     + 
Sbjct: 10   ENMSDFVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSF 69

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PIIGC++ +   D    T++      T   +VLL    EGY  L+ LV+R +  +  
Sbjct: 70   GIKPIIGCEVYVAATDRTDKTSEFAR---TRYHLVLLAQNNEGYHNLVRLVTRGFT-EGF 125

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                R+    L+E  ++GLI L+   +G + R                +  +F  R Y+ 
Sbjct: 126  HYKPRVDKELLREY-SDGLIALSACLAGEVPRVLMKQGMDAGIATAQEYASIFPGRFYLE 184

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ +   ++     ++++LA    LPLVATN+  +L   D EAHD+L+ +   T V    
Sbjct: 185  LQSNGIKEQEVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQTTVDDPK 244

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R  T + Y K+  EM   F+ +PEA+ NT  IA  C+  +       P +   E    
Sbjct: 245  RMRFETRELYYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVYELPEGM-- 302

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                + E +  A  GL+ RL +         + Y  RL++EL VI  M F GYFLIV DF
Sbjct: 303  --TLDTEFQRLAEEGLKKRLEKHPDRDTIDHKAYWDRLEWELKVITDMGFPGYFLIVQDF 360

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I WAK N IPVGPGRGS AGS+ A++L IT++DP+ + LLFERFLN +R+SMPD D+DFC
Sbjct: 361  INWAKNNGIPVGPGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPDIDVDFC 420

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            + RR EVIRYV  KYG + V+QI TFG ++AKA +RDVGRAL M + + DR+ KLIP D 
Sbjct: 421  ERRRTEVIRYVAEKYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAKLIPEDL 480

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A+  +         DP + +LL++S +LEGL RHASTHAAG+VI D+P+S+ +
Sbjct: 481  KMTIK-KALEAEPDLATLYRDDPQIRKLLDVSMRLEGLSRHASTHAAGVVISDKPMSEYL 539

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIP 602
            P+Y+  +    VTQF+MK +EK GL+KFDFLGL+T+TL+Q +LD    Q     DL  + 
Sbjct: 540  PLYKG-KKGETVTQFDMKMVEKVGLVKFDFLGLRTMTLVQDALDEITRQGKTPPDLDTLS 598

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-- 660
             DD ETY L +   T G+FQ+ESSGMRQ L  ++P C +DIIA+++LYRPGP+ + +V  
Sbjct: 599  LDDAETYELYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGSGMVDE 658

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  RK+G+  +    P ++  L+ T GVI+YQEQVMQIAQ++  Y+L  AD+LRRAMGKK
Sbjct: 659  FIKRKHGEVPVTYPVPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRRAMGKK 718

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I E M +++ +F+ GA KN I K  A  IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K
Sbjct: 719  IAEAMAEERTKFVQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTAFLK 778

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             H+PVEF+AA +T EM N +K+ K+    +  +I+++ P+V     +F V + RI + L 
Sbjct: 779  VHFPVEFMAALLTSEMGNQDKLLKYVAACKDMDIEVLRPNVQVSRREFTVHEGRIVFGLG 838

Query: 841  AIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK VG    R I++A  +  P+ SL D C RV+ +K+ +RV+E+L+  GA DC G +R 
Sbjct: 839  GIKNVGDEAIREIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACDCLGCTRA 898

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI------TLEKFSVENSSVRFE 953
             +L SLD +   AQ   K R +   ++F   K               +         +  
Sbjct: 899  GMLASLDTVVARAQKKLKERDSNQVSLFTMIKEEPKVCPGIGFDCEEQTAPEWPDDQKLR 958

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+  LGF+ + HPL  Y+  L ++ +   EE+     G  IR A +V + ++  T+KG 
Sbjct: 959  FEKEALGFFLTSHPLQPYRKELFRLRLTPLEEARDMPPGAEIRTAVLVTTLKELMTKKGQ 1018

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
            R+ +    +     E  FFP
Sbjct: 1019 RMAFAGVEDLTASAEVVFFP 1038


>gi|253577284|ref|ZP_04854602.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843288|gb|EES71318.1| DNA polymerase III [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 1110

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/1060 (37%), Positives = 594/1060 (56%), Gaps = 47/1060 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLL+GA  L +++ K AA    A+A+TD   ++ A+ F +     GI+P
Sbjct: 38   SFVHLHVHSEYSLLDGAARLEDLVAKAAASGMKALALTDHGVMYGAVPFYKLCKKHGIKP 97

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++        +   +G      +  ++LL     GY+ L++L S  +L +      
Sbjct: 98   IIGCEVYFTAGSRKE---RGSRKDQPIHHLILLAKNETGYRNLMKLCSIGHL-EGFHYKP 153

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +   EGL+ L+    G +         + A+K  L ++  FG+  Y+ LQ H
Sbjct: 154  RIDWDAL-QRHREGLVCLSACLGGEVPFHLLRGHYEEAKKAALRYQAAFGEDFYLELQDH 212

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
               ++      +VQLA      LV TN++ +LS+ED E  DVL+ V     V  +DR + 
Sbjct: 213  GIPEQKKVNPLLVQLAGEIGAELVVTNDAHYLSKEDAEVQDVLICVGTGKTVDDEDRLKM 272

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T   YLK   EM  +F  LPEA  NT +IA  C   L+    ILP +            
Sbjct: 273  HTNQLYLKTAEEMAQLFPHLPEAYANTAKIADSCELELEFDRHILPAY---RPIPEGHTA 329

Query: 308  ENELRNKAVAG-LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + L      G ++              +   QRL +EL +IA M FS YFLIV DFI +
Sbjct: 330  GSYLAELCQQGLVDRYGELDVWRDLTEREKLEQRLRYELEIIASMGFSDYFLIVWDFIAF 389

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N I  GPGRGS AGS+ AY L ITD+DP++++LLFERFLNP+R++MPD DIDF  +R
Sbjct: 390  AHRNGIATGPGRGSSAGSLVAYVLRITDVDPIKYNLLFERFLNPERVTMPDIDIDFSDER 449

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG E VAQIITFG++ A+AA+RDVGRAL +P+ +VD++ KLIP      
Sbjct: 450  RDEVIAYVVDKYGAEHVAQIITFGTMAARAAVRDVGRALNVPFGEVDKVAKLIPGHLGMT 509

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ +    +        V RLL+++ K+EG+ RHASTHAAG+VI   PL+  VP+ 
Sbjct: 510  IE-RALKESPDLKAMYDGSERVKRLLDMAMKVEGMPRHASTHAAGVVISRDPLTDAVPLQ 568

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
             +      +TQ++M+ +E  GL+K DFLGL+TL+++++ ++++  Q G   D  L+P +D
Sbjct: 569  -EGSEHTALTQYSMENLEAIGLLKMDFLGLRTLSIIERCMNWIKEQSGDAPDFRLVPDND 627

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              TY +L    T G+FQLES+GMR+ L+ M+P   EDII+L++LYRPGP++ I  Y   K
Sbjct: 628  PATYEMLGRGETTGVFQLESTGMRRVLKEMKPSVFEDIISLLALYRPGPMEFIPKYIAGK 687

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+  +   HP ++P+LK+T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E +
Sbjct: 688  HGQITVEYPHPDLEPILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKKREVL 747

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+Q+  F+SG+ + G ++  A  +++++ +FADYGF ++HAAAY V+++QTA++K HYPV
Sbjct: 748  DEQRGHFVSGSVQQGYTEDEANVVYDMIVRFADYGFARAHAAAYGVLAFQTAYLKAHYPV 807

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----------- 834
            +F+A+ +T    +  K+ ++  + R+  I ++PP VN   V F                 
Sbjct: 808  QFMASMLTAVTGSHRKVAEYIVECRRMGIVVLPPDVNESSVLFTPQVGAGSADAALSGEA 867

Query: 835  ---------------------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                                 I + LAAIK VGT     I+    ++PFDSL DFC RVD
Sbjct: 868  KGRDAKDGHAGSGQEPPALGVIRFGLAAIKNVGTQAIESILRERKERPFDSLLDFCRRVD 927

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             +  N+RV+ESL+  GA D     R QLL  LD   + A    K R      +F   +  
Sbjct: 928  LRTCNKRVIESLIQGGAFDSLPGHRAQLLAMLDETVEAALKWRKERDELQIQLFDFVESP 987

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
              D I         ++ + + E+ +LG Y SGHPLD +  +L   G+    +        
Sbjct: 988  NWD-IEYPDVPKFTAAQQLDLERELLGLYLSGHPLDDFDALLEGEGVDRLMDLAEAPDDT 1046

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +A MVVS +   T++G  + ++   +  +  E   FP
Sbjct: 1047 RTVVAGMVVSVKTITTKQGKAMAFMELEDQIERCEVVLFP 1086


>gi|78357239|ref|YP_388688.1| DNA polymerase III subunit alpha [Desulfovibrio desulfuricans subsp.
            desulfuricans str. G20]
 gi|78219644|gb|ABB38993.1| DNA polymerase III, alpha subunit [Desulfovibrio desulfuricans subsp.
            desulfuricans str. G20]
          Length = 1165

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1037 (40%), Positives = 616/1037 (59%), Gaps = 23/1037 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL  H+ YSLL+GA+ L ++ +K       A+AITD  N++ A+ F Q A   G++
Sbjct: 2    PQFVHLHCHTEYSLLDGAIRLKDLCEKAKEFDMSAVAITDHGNMYGAVYFYQMAQKMGLK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC++ +   D+   T            +VLL     GY  L +LV+R +  +     
Sbjct: 62   PIIGCEVYVAHGDHTDKT---GDMAKKRYHLVLLAQNRTGYHNLAKLVTRGFT-EGFHYK 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L++  +EG+I L+   +G I RA        A +    + +++ DR Y+ +Q 
Sbjct: 118  PRVSKDLLRQY-SEGIIALSACLAGEIPRALLNEGMDRAIELAREYAEIYPDRFYLEVQS 176

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++     ++++LA    LPLVATN+  +L + D EAHD L+ +     V+ + R R
Sbjct: 177  NGLKEQDELNDKLIELAGITGLPLVATNDCHYLEKTDVEAHDTLLCIQTGAKVTDERRMR 236

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + Y K+  EM + F+ +PEA+ENTV+IA +    L +     P +   E       
Sbjct: 237  FETTELYYKSPDEMAAAFAHVPEAIENTVKIAGQIDVTLDLGNYYFPNYELPEGM----T 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+E R  +  GL+ RL             Y QRL+ EL+VI  M F GYFLIV DFI W
Sbjct: 293  LEDEFRKLSHEGLQKRLEILPYRDQIDEPAYWQRLEKELDVICSMGFPGYFLIVQDFINW 352

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N IPVGPGRGS AGS+ A+AL IT++DP+ ++LLFERFLN +R+SMPD D+DFC+ R
Sbjct: 353  AKDNKIPVGPGRGSAAGSIVAWALKITNLDPIPYNLLFERFLNNERVSMPDIDVDFCERR 412

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI+YV  KYG + VAQI TFG ++AKA +RDV RAL + +   DR+ KLIP D    
Sbjct: 413  RGEVIQYVGRKYGEDSVAQITTFGKMKAKAVVRDVARALGLSFQDGDRIAKLIPEDLKMT 472

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   +     DP + +LL+IS +LEGL RHASTHAAG+VI D+P+ + +P+Y
Sbjct: 473  IK-KALDMEPDLKTLYTNDPQIRKLLDISMRLEGLSRHASTHAAGVVISDKPMFEYLPLY 531

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
            RD +    VTQF+MK +EK GL+KFDFLGL+T+TL+Q +LD +A +G    DL  +  +D
Sbjct: 532  RDKKGG-IVTQFDMKIVEKVGLVKFDFLGLRTMTLVQDALDLIAMQGLTPPDLDTMSLED 590

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
             ETY L +   T G+FQ+ESSGMRQ L  ++P C +D+IA+++LYRPGP+ + +V  +  
Sbjct: 591  KETYELYSRGETDGVFQVESSGMRQYLRMLRPSCFDDVIAMLALYRPGPLGSGMVDEFIK 650

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+  +      +   L++T GVI+YQEQVMQIAQ+++ Y+L  AD+LRRAMGKK  E
Sbjct: 651  RKHGEVAVTYPLESLKDCLRDTYGVIVYQEQVMQIAQIVANYTLGGADLLRRAMGKKNAE 710

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M +++ +F  GA +N + +  A  IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K HY
Sbjct: 711  AMAEERIKFTKGAKENNVPEAKATEIFDLMEKFAEYGFNKSHSAAYALISYYTAYLKVHY 770

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF+AA MT EM+N EK+ K+    +   ++++ P+V     +F V D ++ Y L  IK
Sbjct: 771  PVEFMAALMTSEMNNQEKVLKYVACCKDMGVEVLAPNVQISRREFSVLDGKVTYGLGGIK 830

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG    R I+ A   D PF S+ D C RV+ +K+ +RVLE+L+ +GA DC G +R  ++
Sbjct: 831  NVGDEAIREIVRAREEDGPFQSMLDLCMRVNLRKVTKRVLENLIKSGACDCLGCTRQGMV 890

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL------EKFSVENSSVRFENEQ 956
              LD +   AQ   K + +   ++F+  +        L      +     +   +   E+
Sbjct: 891  AGLDTVVARAQKKAKEKASNQISMFSVMEQEPQTCPGLGFDCPEQSMEEWDDEEKLRKEK 950

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              LGFY S HPL  Y+  + ++ +   E+        + + A +V S ++  T+KG R+ 
Sbjct: 951  EALGFYLSSHPLQPYRKEIFRLRLTPLEDCREMGPEQSFKSAVLVTSIKEILTKKGHRMA 1010

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +    +     E  FFP
Sbjct: 1011 FCQVEDLTASGECIFFP 1027


>gi|312127676|ref|YP_003992550.1| DNA polymerase III subunit alpha [Caldicellulosiruptor hydrothermalis
            108]
 gi|311777695|gb|ADQ07181.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
            hydrothermalis 108]
          Length = 1140

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1033 (37%), Positives = 600/1033 (58%), Gaps = 30/1033 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA  ++ + +++      A+AITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHLHTEYSLLDGACRIDRLFERVKELNMNAVAITDHGAMYGVIDFYKAAKENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +               +  +VLL    +GY+ L ++VS  + ++      
Sbjct: 62   IIGCEVYLAPRTRFDKEP---NIDNDIHHLVLLAMDNDGYRNLSKIVSIGF-VEGFYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L +  ++GL+ LT   +G I +       +     +  +K++FG+  Y  LQ H
Sbjct: 118  RVDREVLSKY-SKGLVALTSCLAGEIPKLILREQKEKLYDAISFYKEVFGENFYFELQYH 176

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++    +++++L+  +++PLVATN+  +L  ED   HD+L+ +     +S  +R   
Sbjct: 177  YIDEQRFVNNELMRLSKKYQIPLVATNDVHYLRREDRNLHDILLCIQTGKTISDSNRMEF 236

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM  +F  +PEAL+NT+EIA +C+   +     LP+F   E  +   + 
Sbjct: 237  PTDEFYLKSPEEMQQLFGYIPEALKNTLEIAEKCNVEFEFGKINLPKFQLPEGKN---DA 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+  A+ G + R            +    RL  EL VI  M F  YFLIV DFI +A
Sbjct: 294  FEYLKELALEGFKKRYKNDD-------KAAYDRLMMELQVIKDMGFVEYFLIVQDFINYA 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDFC  RR
Sbjct: 347  KQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDIDFCYQRR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K++P  P   +
Sbjct: 407  QEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGVPYSQVDEIAKMVPFSPGMTI 466

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                +  +   ++    + +V R+++ ++ LEG+ RHAS HAAG+VI   P++ LVP+  
Sbjct: 467  DKA-LEINHDLKKIYEQNDTVRRIIDTARNLEGMPRHASVHAAGVVISSCPITDLVPL-- 523

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D  VTQF M  +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL  I ++D 
Sbjct: 524  ARTDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLDRIDYNDK 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y  ++   T G+FQLESSGM+Q +  ++P+ +EDIIA +SL+RPGP+D I VY   KN
Sbjct: 584  NVYEFISEGNTNGVFQLESSGMKQFMRELKPENLEDIIAGISLFRPGPMDQIPVYIQNKN 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +EKI  +HP ++P+L  T G I+YQEQVMQI + L+GYSL  AD++RRAM KK  + + 
Sbjct: 644  NREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAKKKADILM 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            ++K+RFI GA  NGI K  A  IF ++  FA Y FNKSHAAAYA+++YQTA++K +Y +E
Sbjct: 704  EEKDRFIEGAMANGIDKETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYLKKYYTIE 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+ + +T  M++ EK+  + ++ R+F I I+PP +N    DF +  N I + L AIK +G
Sbjct: 764  FMTSLITSVMNSNEKVGMYIEECRKFGISILPPDINKSSYDFTIEGNSIRFGLRAIKSLG 823

Query: 847  TTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                 HI++   +   F  L DF  RVD+  +N+R++E+L+ +GA D  G +R  LL S+
Sbjct: 824  ENVIAHILKEREEKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGINRNSLLASV 883

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            ++I        K +     + F    G  ++    +      +    + E+  +G Y S 
Sbjct: 884  EDIL--VIKQAKKKNANQFSFF-EISGNENESFEYKNMPQPTAQELMKMEKDTIGIYISS 940

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNN-----IRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            HPL+ Y   + K  +    E  A    +      I +  ++   + K T+    + +   
Sbjct: 941  HPLERYTEEISKYNVTPLSEISAMSEEDEYKFEQILVCGILKEVKVKLTKNNQTMAFAKL 1000

Query: 1021 SEPAKEYEANFFP 1033
             +     E  FFP
Sbjct: 1001 EDLTDSVEVLFFP 1013


>gi|146296832|ref|YP_001180603.1| DNA polymerase III DnaE [Caldicellulosiruptor saccharolyticus DSM
            8903]
 gi|145410408|gb|ABP67412.1| DNA polymerase III catalytic subunit, DnaE type [Caldicellulosiruptor
            saccharolyticus DSM 8903]
          Length = 1141

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1033 (36%), Positives = 600/1033 (58%), Gaps = 30/1033 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YSLL+GA+ + ++ +++      +IAITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHVHTEYSLLDGAVRIESLFERVRQLNMHSIAITDHGAMYGVVDFYKAAKENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +               +  +VLL    EGY+ L ++VS  + ++      
Sbjct: 62   IIGCEVYLAPRSRFDKEP---NIDNDIHHLVLLAIDNEGYKNLSKIVSIGF-VEGFYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L +  ++GLI LT   +G I +    +  +     +  +K +FG   Y  LQ H
Sbjct: 118  RVDREILSKY-SKGLIALTSCLAGEIPKFILRDQKEKLMDAIGFYKDVFGCNFYFELQYH 176

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++    S++++L+  +++P+VATN+  +L  ED E HD+L+ +     +   +R   
Sbjct: 177  GIDEQRFVNSELIRLSKKYQIPVVATNDVHYLKREDREIHDILLCIQTGKTIHDSNRMEF 236

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM  +F  +PE+L+NT+EIA +C+   +     LP+F   E    + + 
Sbjct: 237  PTSEFYLKSAQEMEEVFGYIPESLKNTLEIAEKCNVEFEFGKINLPKFQLPEG---KSDA 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+  A AG E              +    RL  ELNVI  M F+ YFLIV DFI +A
Sbjct: 294  FEYLKELAFAGFEK-------RYSKENKAAYDRLLMELNVIKDMGFTEYFLIVHDFINYA 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+NNI VGPGRGS AGS+ AY L IT++DP++++LLFERFLNP+R+SMPD DIDFC  RR
Sbjct: 347  KQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYNLLFERFLNPERVSMPDIDIDFCYQRR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV NKYG ++V+QIITFG++ A+A++RDVGR L +PY+QVD + K++P  P   +
Sbjct: 407  QEVIDYVTNKYGKDKVSQIITFGTMAARASIRDVGRVLGVPYAQVDEIAKMVPFSPGMTI 466

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                +  +   ++    + +V R+++ ++ +EG+ RH S HAAG+VI   P++ LVP+  
Sbjct: 467  DKA-LEVNHDLKKIYEQNETVKRIIDTARSIEGMPRHTSVHAAGVVISSCPITDLVPL-- 523

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDH 606
                D  VTQF M  +E+ GL+K DFLGL+TLT++Q +L+     R +++DL  I ++D 
Sbjct: 524  ARTEDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELIKKHRKIEIDLDKIDYNDR 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y  ++   T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I VY   KN
Sbjct: 584  SVYQFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIPVYIQNKN 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             KEKI  +HP ++P+L  T G I+YQEQVMQI + L+GYSL  AD++RRAM KK  + + 
Sbjct: 644  NKEKIEYLHPKLEPILNVTYGCIVYQEQVMQIFRELAGYSLGRADLVRRAMAKKKADILM 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            ++++RFI GA  NG+ +  A  IFE++  FA Y FNKSHAAAYA+++YQTA++K ++ +E
Sbjct: 704  EERDRFIEGAVANGVDRQTAEKIFEIIEDFASYAFNKSHAAAYAILAYQTAYLKKYFTIE 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+ + +T  M++ EK+  + ++ R+F I I+PP +N    DF +  N I + L AIK +G
Sbjct: 764  FMTSLITSVMNSNEKVGMYIEECRRFGISILPPDINKSSYDFTIEGNSIRFGLRAIKSLG 823

Query: 847  TTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                 HI++    +  F  L DF  RVD+  +N+R++E+L+ +GA D    +R  LL S+
Sbjct: 824  ENVISHILKEREQNGEFKDLYDFVMRVDTNTVNKRIIENLIKSGAFDFTKINRNSLLASV 883

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            ++I    Q  +KN        F       +   + +      +    + E+  +G Y SG
Sbjct: 884  EDILTIKQSQKKN--ANQITFF-EISDDQTKIFSYKDLPEPTTEELLQMEKDTIGIYISG 940

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRG-----NNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            HPL+ Y  ++ K  +    E              I +  ++   + K T+    + +   
Sbjct: 941  HPLEKYGDLISKYNVVSLAELSNMTEDDEYKYQQILVCGILKEVKIKLTKNNQTMAFAKI 1000

Query: 1021 SEPAKEYEANFFP 1033
             +     E  FFP
Sbjct: 1001 EDLTDTLEVLFFP 1013


>gi|46579764|ref|YP_010572.1| DNA polymerase III subunit alpha [Desulfovibrio vulgaris str.
            Hildenborough]
 gi|46449179|gb|AAS95831.1| DNA polymerase III, alpha subunit [Desulfovibrio vulgaris str.
            Hildenborough]
 gi|311233555|gb|ADP86409.1| DNA polymerase III, alpha subunit [Desulfovibrio vulgaris RCH1]
          Length = 1164

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1037 (40%), Positives = 603/1037 (58%), Gaps = 23/1037 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              FVHL  H+ YSLL+GA+ L ++  +       A AITD  NLF A  F     + GI+
Sbjct: 2    SDFVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSFGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC++ +   D    T++      T   +VLL    EGY  L+ LV+R +  +     
Sbjct: 62   PIIGCEVYVAATDRTDKTSEFAR---TRYHLVLLAQNNEGYHNLVRLVTRGFT-EGFHYK 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L+E  ++GLI L+   +G + R                +  +F  R Y+ LQ 
Sbjct: 118  PRVDKELLREY-SDGLIALSACLAGEVPRVLMKQGMDAGIATAQEYASIFPGRFYLELQS 176

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++     ++++LA    LPLVATN+  +L   D EAHD+L+ +   T V    R R
Sbjct: 177  NGIKEQEVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQTTVDDPKRMR 236

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + Y K+  EM   F+ +PEA+ NT  IA  C+  +       P +   E       
Sbjct: 237  FETRELYYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVYELPEGM----T 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + E +  A  GL+ RL +         + Y  RL++EL VI  M F GYFLIV DFI W
Sbjct: 293  LDTEFQRLAEEGLKKRLEKHPDRDTIDHKAYWDRLEWELKVITDMGFPGYFLIVQDFINW 352

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N IPVGPGRGS AGS+ A++L IT++DP+ + LLFERFLN +R+SMPD D+DFC+ R
Sbjct: 353  AKNNGIPVGPGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPDIDVDFCERR 412

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVIRYV  KYG + V+QI TFG ++AKA +RDVGRAL M + + DR+ KLIP D    
Sbjct: 413  RTEVIRYVAEKYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAKLIPEDLKMT 472

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +         DP + +LL++S +LEGL RHASTHAAG+VI D+P+S+ +P+Y
Sbjct: 473  IK-KALEAEPDLATLYRDDPQIRKLLDVSMRLEGLSRHASTHAAGVVISDKPMSEYLPLY 531

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDD 605
            +  +    VTQF+MK +EK GL+KFDFLGL+T+TL+Q +LD    Q     DL  +  DD
Sbjct: 532  KG-KKGETVTQFDMKMVEKVGLVKFDFLGLRTMTLVQDALDEITRQGKTPPDLDTLSLDD 590

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
             ETY L +   T G+FQ+ESSGMRQ L  ++P C +DIIA+++LYRPGP+ + +V  +  
Sbjct: 591  AETYELYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGSGMVDEFIK 650

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+  +    P ++  L+ T GVI+YQEQVMQIAQ++  Y+L  AD+LRRAMGKKI E
Sbjct: 651  RKHGEVPVTYPVPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRRAMGKKIAE 710

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M +++ +F+ GA KN I K  A  IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K H+
Sbjct: 711  AMAEERTKFVQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTAFLKVHF 770

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF+AA +T EM N +K+ K+    +  +I+++ P+V     +F V + RI + L  IK
Sbjct: 771  PVEFMAALLTSEMGNQDKLLKYVAACKDMDIEVLRPNVQVSRREFTVHEGRIVFGLGGIK 830

Query: 844  GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG    R I++A  +  P+ SL D C RV+ +K+ +RV+E+L+  GA DC G +R  +L
Sbjct: 831  NVGDEAIREIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACDCLGCTRAGML 890

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI------TLEKFSVENSSVRFENEQ 956
             SLD +   AQ   K R +   ++F   K               +         +   E+
Sbjct: 891  ASLDTVVARAQKKLKERDSNQVSLFTMIKEEPKVCPGIGFDCEEQTAPEWPDDQKLRFEK 950

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              LGF+ + HPL  Y+  L ++ +   EE+     G  IR A +V + ++  T+KG R+ 
Sbjct: 951  EALGFFLTSHPLQPYRKELFRLRLTPLEEARDMPPGAEIRTAVLVTTLKELMTKKGQRMA 1010

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +    +     E  FFP
Sbjct: 1011 FAGVEDLTASAEVVFFP 1027


>gi|222085600|ref|YP_002544130.1| DNA polymerase III alpha subunit protein [Agrobacterium radiobacter
            K84]
 gi|221723048|gb|ACM26204.1| DNA polymerase III alpha subunit protein [Agrobacterium radiobacter
            K84]
          Length = 1187

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 633/1032 (61%), Positives = 808/1032 (78%), Gaps = 7/1032 (0%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P FVHL+VHS+YSLLEGAL L  IL K A D QPAIA+TDTNNLF ALEFSQKA   G
Sbjct: 38   DTPEFVHLRVHSAYSLLEGALPLKKILAKAAGDNQPAIAVTDTNNLFVALEFSQKAMDEG 97

Query: 67   IQPIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            +QPIIGCQ+ IDM+D ++   +G +     +PSIVL  +T  GY+RL++LVSR YL  +G
Sbjct: 98   LQPIIGCQVSIDMEDGVEGEKRGPQQALAKLPSIVLFAATERGYERLVDLVSRAYLGGEG 157

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
             Q+V I  SWL+EIGTEG+I LTG   GP+D A     +  A  RLL  K+LFGDRLY+ 
Sbjct: 158  NQAVHITASWLEEIGTEGMIALTGSLGGPVDMALKEGHAPQALSRLLALKRLFGDRLYIE 217

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            LQRH  YDR  E +++ LAY HELPLVATN + F + +DY+AHD LMAVAH+ +VS   R
Sbjct: 218  LQRHGTYDRRHEQKMIALAYEHELPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDTR 277

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDI 303
             R+TPDHYLK+R++M  +F++LPEALENTVEIARRCSF+L+   PILPRF     + ++ 
Sbjct: 278  FRLTPDHYLKSRADMAKLFANLPEALENTVEIARRCSFVLKTRKPILPRFTGAADDEEEA 337

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             + E  ELR +A+ GL+ RLA   +A GY  +DYR+RL+FEL+VI RMKF GYFLIVADF
Sbjct: 338  DRAESAELRAQAIEGLDQRLASLGMAPGYVEKDYRERLEFELSVIERMKFPGYFLIVADF 397

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFC
Sbjct: 398  IKWAKRHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFC 457

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QDRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+P
Sbjct: 458  QDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNP 517

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A+P    QAI ++ R +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+L
Sbjct: 518  ANPTPLHQAIKEEPRLQEEADKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKL 577

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ +DL+ IP
Sbjct: 578  VPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFVAKRGISIDLASIP 637

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN
Sbjct: 638  LDDKKTYDMLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYN 697

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G+E+I SIHP ID +LKETQGVI+YQEQVMQ+AQ+LSGYSL EAD+LRRAMGKKIK
Sbjct: 698  ARKHGEEEIESIHPTIDYLLKETQGVIVYQEQVMQVAQVLSGYSLGEADLLRRAMGKKIK 757

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EMD+Q+ERF+ GA KNG+SK  +  IF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK H
Sbjct: 758  AEMDQQRERFVDGAVKNGVSKGQSDVIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAH 817

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YPVEFLAASMTL+M N EK+  F QDA++  I+++ PS+ T    F+ G+NRIYY+LAA+
Sbjct: 818  YPVEFLAASMTLDMANTEKVNDFRQDAKRLGIEVIAPSIQTSFRRFETGENRIYYALAAL 877

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KGVG +   HI+E   D+PF  +EDFC R+D K++NRRVLESL+ AGA DCF   R QL+
Sbjct: 878  KGVGESAVDHIVEVRGDQPFAGIEDFCLRIDPKQINRRVLESLIAAGAFDCFEIDRAQLI 937

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              +D I  YAQ  ++N+ +   ++F     +  +KI+   F+   +S R   E +VLGFY
Sbjct: 938  GGIDRIMGYAQVAQENKRSGQHDMFG-SAASGPEKISFPPFTPWLASERLLREFQVLGFY 996

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             + HPLD YK +L KM ++ + +  A ++   +N RLA  V+SKQ++KTR G+++G   F
Sbjct: 997  LTAHPLDTYKSVLDKMRVQNFADFSAAVKQGASNGRLAGTVISKQERKTRTGNKMGIFVF 1056

Query: 1021 SEPAKEYEANFF 1032
            S+ + ++EA  F
Sbjct: 1057 SDASGQFEAVLF 1068


>gi|312622501|ref|YP_004024114.1| DNA polymerase III subunit alpha [Caldicellulosiruptor kronotskyensis
            2002]
 gi|312202968|gb|ADQ46295.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
            kronotskyensis 2002]
          Length = 1139

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1033 (37%), Positives = 599/1033 (57%), Gaps = 30/1033 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA  ++ + +++      A+ ITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHLHTEYSLLDGACRIDRLFERVKDLNMNAVGITDHGAMYGVIDFYKTAKENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +               +  +VLL    +GY+ L ++VS  + ++      
Sbjct: 62   IIGCEVYLAPRTRFDKEP---NIDNDIHHLVLLAMDNDGYRNLSKIVSIGF-VEGFYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L +  ++GLI LT   +G I +       +     +  +K++FG+  Y  LQ H
Sbjct: 118  RVDREVLSKY-SKGLIALTSCLAGEIPKLILREQKEKLYDAINFYKEVFGENFYFELQYH 176

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++    +++++L+  +++PLVATN+  +L  ED   HD+L+ +     +S  +R   
Sbjct: 177  YIDEQRFVNNELMRLSKKYQIPLVATNDVHYLRREDRNLHDILLCIQTGKTISDSNRMEF 236

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM  +F  +PEAL+NT+EIA +C+   +     LP+F   E    + + 
Sbjct: 237  PTDEFYLKSPEEMQQLFGYIPEALKNTLEIAEKCNVEFEFGKINLPKFQLPEG---KSDA 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+  A+ G + R            +    RL  EL VI  M F  YFLIV DFI +A
Sbjct: 294  FEYLKELALEGFKKRYKNDD-------KAAYDRLMMELQVIKDMGFVEYFLIVQDFINYA 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDFC  RR
Sbjct: 347  KQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDIDFCYQRR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP  P   +
Sbjct: 407  QEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGVPYSQVDEIAKMIPFSPGMTI 466

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                +  +   ++    +  V ++++ ++ LEG+ RHAS HAAG+VI   P++ LVP+  
Sbjct: 467  DKA-LEINHELKKIYEQNDMVRKIIDTARNLEGMPRHASVHAAGVVISSCPITDLVPL-- 523

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D  VTQF M  +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL  I ++D 
Sbjct: 524  ARTDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLDRIDYNDK 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y  ++   T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I VY   KN
Sbjct: 584  NVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIPVYIQNKN 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +EKI  +HP ++P+L  T G I+YQEQVMQI + L+GYSL  AD++RRAM KK  + + 
Sbjct: 644  NREKIGYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAKKKADILM 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            ++K+RFI GA  NGI K  A  IF ++  FA Y FNKSHAAAYA+++YQTA++K +Y +E
Sbjct: 704  EEKDRFIEGAMANGIDKETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYLKKYYTIE 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+A+ +T  M++ EK+  + ++ R+F I I+PP +N    DF +  N I + L AIK +G
Sbjct: 764  FMASLITSVMNSNEKVGMYIEECRKFGISILPPDINKSSYDFTIEGNSIRFGLRAIKSLG 823

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                 HI++       F  L DF  RVD+  +N+R++E+L+ +GA D  G +R  LL S+
Sbjct: 824  ENVIAHILKEREKKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGLNRNSLLASV 883

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            ++I   A    K +     + F    G  ++    +      +    + E+  +G Y S 
Sbjct: 884  EDIL--AIKQAKKKNANQFSFF-EISGNENESFVYKNMPQPTAQELMKMEKDTIGVYISS 940

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNN-----IRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            HPL+ Y   + K  I    E       +      I +  ++   + K T+    + +   
Sbjct: 941  HPLEKYTEEISKYNITPLSEISGMSEEDEYKFEQILVCGILKEVKVKLTKNNQTMAFAKL 1000

Query: 1021 SEPAKEYEANFFP 1033
             +     E  FFP
Sbjct: 1001 EDLTDSVEVLFFP 1013


>gi|257439793|ref|ZP_05615548.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
            A2-165]
 gi|257197702|gb|EEU95986.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
            A2-165]
          Length = 1171

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1046 (36%), Positives = 588/1046 (56%), Gaps = 41/1046 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +H+ YSLL+GA  ++ ++D++    Q AIA TD   ++  ++F + A  AGI+P
Sbjct: 13   DFVHLHIHTEYSLLDGACRIDQLMDRVKECGQTAIACTDHGVMYGCVQFYKAAKKAGIKP 72

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +      N+          ++LL     GY+ L +LVS  ++ +      
Sbjct: 73   IIGCEVYVATRTRFDKVNK----IDGNNHLILLCKNETGYKNLAKLVSAAFI-EGFYSKP 127

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+    L++   EGLI L+   +G I +A      + A+   L ++ LFG+   Y+ LQ 
Sbjct: 128  RVDKQLLEQYH-EGLICLSACLAGEIPQAILSGDYERAKASALWYRDLFGEGNYYIELQD 186

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
            H   +      Q+++LA    +P+ ATN+S +L +ED +   +L+ +     +   DR  
Sbjct: 187  HGLEEDNIVLPQLIKLARETGIPMAATNDSHYLRKEDAKMQAILLCIQTGKTMQDADRME 246

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + Y+K   EM  +F+ +P+A  NT  IA +C+F  +     +P +      D Q  
Sbjct: 247  FQTDEFYVKTTDEMYDLFAMVPDACANTRIIADQCNFDFEFGNTKIPYYKAPGGMDNQ-- 304

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                       GLE R            Q  + RL++E++VI  M ++ Y+LIV D++ +
Sbjct: 305  --AFFEKLCWEGLERRYGSNV------PQANKDRLNYEISVIKTMGYTNYYLIVWDYVNY 356

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IPVGPGRGSGAGS+ AY++ ITDIDP+R++L+FERFLNP+R+SMPDFD+DFC +R
Sbjct: 357  AKSQGIPVGPGRGSGAGSIAAYSVGITDIDPIRYNLIFERFLNPERVSMPDFDVDFCYER 416

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG + VAQI+TFG++ A+ A+RDVGR + MPY +VD + K +P +    
Sbjct: 417  RQEVIDYVNRKYGADHVAQIVTFGTMAARNAIRDVGRVMGMPYQEVDVVAKQVPAELKMT 476

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A+      R     DP V  LL+ + K+EG+ RHASTHAAG+VI   P    +P+ 
Sbjct: 477  IK-HALEVSPELRRMYETDPKVTELLDTAMKVEGMPRHASTHAAGVVITPEPTDYYLPL- 534

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                  LPVTQFNM  IE+ GL+K DFLGL+TLT+++ +   + ++     ++ + +DD 
Sbjct: 535  -ATNDGLPVTQFNMTEIEELGLLKMDFLGLRTLTVIRDAELAIQKKEPDFSIAKLDYDDP 593

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            ETY +L+   T G+FQLESSGM+Q L G+QP  +ED+IAL+SLYRPGP+D+I  Y   ++
Sbjct: 594  ETYKMLSRGETEGVFQLESSGMKQVLVGLQPQNLEDVIALISLYRPGPMDSIPTYLRNRH 653

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              +KI    P +  +L  T G I+YQEQVMQI + L+G+S  +AD +RRAM KK    M+
Sbjct: 654  EPDKISYKTPQLAHILDVTNGCIVYQEQVMQIFRELAGFSFGQADNVRRAMSKKKHAVME 713

Query: 727  KQKERF----------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
             ++E F            G   NGIS+ IA  I++ ++ FA Y FNKSHAA YA +++QT
Sbjct: 714  AEREHFVHGCTDPGNECPGCVANGISEKIANEIYDEMSSFASYAFNKSHAACYAYVAFQT 773

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRI 835
            A++K HYP EF+AA +T  +DN  K+ ++  +  +  I+++PP +N     F   D  RI
Sbjct: 774  AYLKCHYPSEFMAALLTSVLDNTGKVIEYSGECARLGIKVLPPDINISGSGFTAEDSGRI 833

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             + L A+K VGT      +E   +KP+ SL DFC R+   +LNRR +ESL+ AGA D  G
Sbjct: 834  RFGLNAVKNVGTRLIERSVEERQEKPYTSLYDFCKRMHGTELNRRTVESLIKAGAFDNLG 893

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG----TFSDKITLEKFSVENSSVR 951
             +R  L+++ + + K  +   +   +   ++F+   G    + +D   ++       +  
Sbjct: 894  SNRRSLVEATEGVLKSIESDSRKNLDGQIDLFSMMSGTDNTSAADSYEIKPCPEYTHAEL 953

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE----ESVATIRGNNIRLAAMVVSKQQK 1007
             + E+ V G Y SGHPLD Y+    +      +    E       +++R+   +V  +  
Sbjct: 954  LQQEKEVSGLYLSGHPLDAYREQSAQFATHTIKALTGEDANVPDNSHVRIVCTIVKSKMV 1013

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T+  S + + +  +     E   FP
Sbjct: 1014 TTKTNSMMAYTSVEDLTGTMEVIVFP 1039


>gi|284047929|ref|YP_003398268.1| DNA polymerase III, alpha subunit [Acidaminococcus fermentans DSM
            20731]
 gi|283952150|gb|ADB46953.1| DNA polymerase III, alpha subunit [Acidaminococcus fermentans DSM
            20731]
          Length = 1138

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1036 (36%), Positives = 586/1036 (56%), Gaps = 31/1036 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YSLL+G+  +  ++        PA+AITD   ++  +EF Q+   AGI+PI
Sbjct: 4    FVHLHTHTQYSLLDGSCRIPELVQYAKELGMPALAITDHGVMYGVIEFYQECEKAGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ I    +L  + + ++    +  ++LL     GYQ L++LVS    ++      R
Sbjct: 64   IGCEVYITSGSHLDKSLETRS---KLYHLILLAENRTGYQNLMKLVSIG-EVEGFYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            I    L+   +EGLI L+   +G + R       + AEK +L +  +FG D  Y+ +Q H
Sbjct: 120  IDKDVLRRY-SEGLICLSACIAGEVPRHILRGELETAEKTMLEYLDIFGRDHYYLEIQNH 178

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +      ++ +LA  H + LVATN+  ++ +ED    D+L+ +  +T      R R 
Sbjct: 179  GLPEEATVRQELRRLAQKHGIKLVATNDLHYIRKEDASGQDILLCIQTNTRYLDPQRMRF 238

Query: 249  TPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D +YLK+R EM  +F +  EAL+NT+EIA RC+  L+    +LP F     +      
Sbjct: 239  NNDSYYLKSREEMEELFPEDQEALDNTLEIAERCNVQLEFGHLLLPEFPLPPGE----TM 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR     G   R  +            R+R+++EL +I +M +SGYFLIV DFI ++
Sbjct: 295  DGYLRKLCEEGFPSRYPEDDGTA-------RKRMEYELGIIRQMGYSGYFLIVWDFINYS 347

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++++IPVGPGRGS AGS+ AY   IT IDPL+++L+FERFLNP+R+SMPD D D C  +R
Sbjct: 348  RRHDIPVGPGRGSAAGSIVAYLTGITSIDPLKYNLIFERFLNPERVSMPDIDTDICYVKR 407

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
              V+ Y+  KYG   VAQIITFG+L AKAA++DVGRA+ +P + V+++ KLIPN P   +
Sbjct: 408  HLVVDYLARKYGESHVAQIITFGTLAAKAAVKDVGRAMDIPLNVVNQVNKLIPNTPGTTL 467

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                +      RE R  DPS+ +LL+ +QK+EG+ RH STHAAG+VI    L+  VP+  
Sbjct: 468  KGA-LEGSRELRELRDGDPSIAQLLDFAQKVEGMPRHTSTHAAGVVITPGELTDYVPLQI 526

Query: 548  DVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
               SD       TQ++    E  GL+K D LGL+TLT++  +L  + +    +VD+  I 
Sbjct: 527  TSSSDDEHEYICTQYDKDRSESLGLLKMDLLGLRTLTVIDDALKMIKKNQGTEVDIRTID 586

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--V 660
              D +T  +L    T  +FQ+ES GM + ++ + P+  ED+I LV+LYRPGP+ + +   
Sbjct: 587  LHDPKTCRMLCKGDTAAVFQMESDGMTRLMKQLAPEGFEDLIPLVALYRPGPLGSGMAED 646

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   ++G+     +HPL++P++ +T GVI+YQEQVMQI   L G++L EAD+LRRAMGKK
Sbjct: 647  FIAGRHGRRTAQVLHPLMEPIVADTYGVILYQEQVMQIVSALGGFTLGEADILRRAMGKK 706

Query: 721  IKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
              + +D  KE+F+ GA   +GIS+ +   IF LL  FA YGFNKSH+AAYA+++Y TAW+
Sbjct: 707  KAKLLDSMKEKFLDGAQKLHGISRELGSEIFALLQHFAGYGFNKSHSAAYALVAYHTAWL 766

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K +YPVE++AA +   +   +K+  +    R   IQ++PP +NT    F V  + I + L
Sbjct: 767  KANYPVEYMAAFLNSIITVADKVSWYIGVCRDMGIQVLPPDINTSEAGFSVDGHTIRFGL 826

Query: 840  AAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIK VG      I+E      PF    DF  RVD  K+N+RV+E+L+  G+++ FG  R
Sbjct: 827  GAIKSVGDAAVTVILEERKKRGPFRDFFDFTRRVDLSKVNKRVVEALIKCGSMNGFGLRR 886

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             QLL  +D   + A   +++R      +F  E    ++ I +        +     E+ +
Sbjct: 887  SQLLAIMDPALEAAASEQRDRITGQLGLFGEEDIASANTIPIPNLPEIPKAEILRLEREL 946

Query: 959  LGFYFSGHPLDVYKPILRKMG-IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            +GFY +GHPLD Y+  LR++  +    E      G  I +  ++   + + T+ G R+  
Sbjct: 947  IGFYVTGHPLDAYRNALRRLTPLIRCTE-ENYKDGERIAVGGIITDLRLRSTKNGDRMAS 1005

Query: 1018 VTFSEPAKEYEANFFP 1033
                +         FP
Sbjct: 1006 FVLEDLTGSLTVIAFP 1021


>gi|164686689|ref|ZP_02210717.1| hypothetical protein CLOBAR_00284 [Clostridium bartlettii DSM 16795]
 gi|164604079|gb|EDQ97544.1| hypothetical protein CLOBAR_00284 [Clostridium bartlettii DSM 16795]
          Length = 1178

 Score =  817 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1061 (36%), Positives = 595/1061 (56%), Gaps = 54/1061 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  F HL VH+ YSLL+G   +  ++ +       ++AITD  N+F  ++F ++A   GI
Sbjct: 2    SSEFAHLHVHTEYSLLDGFSRVKKLIKRTKELGMKSVAITDHGNMFGVIDFYKEAKKQGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +P+IGC+L    +    +T++          ++LL     GYQ LI+LVS  Y +D    
Sbjct: 62   KPVIGCELYTAQRS---LTDKDPNFDKRYGHLILLAENMTGYQNLIKLVSISY-VDGFYY 117

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              R+ +  L+E  +EG+I L+   +G +  A    + + A++  LT+ ++FG    Y+ L
Sbjct: 118  KPRVDIEALRE-HSEGIICLSACLAGDVSNALMNRNYEKAKEIALTYNEIFGQGNFYLEL 176

Query: 187  QRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   ++    + +V+L+    +PLVATN+  ++ + D +AHDVL+ +     ++   R
Sbjct: 177  QDHNLPEQKEVNASLVKLSKELNIPLVATNDIHYVDKADSKAHDVLLCIQMGKTLNDPAR 236

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R  T + YLK+R EM  +F    EAL+NT +IA RC+     +   LP +   E     
Sbjct: 237  MRFGTEEFYLKSREEMEELFPYALEALDNTAKIAERCNVEFDFNTIHLPNYEVPEG---- 292

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  L      GL  R           +Q+   RL +EL VI +M +  YFLI  DFI
Sbjct: 293  YTTSGYLEELCYKGLYERYEN-------PSQEILDRLKYELGVINKMGYVEYFLITWDFI 345

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +AK+N I VGPGRGS AGS+ AY L ITDIDP++++LLFERFLNP+R+SMPD DIDFC 
Sbjct: 346  NFAKENGIMVGPGRGSAAGSIVAYTLKITDIDPIKYNLLFERFLNPERVSMPDIDIDFCY 405

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EVI YV+ KYG + VAQIITFG++ AK A+RDVGR L +PY++VD++ K IPN   
Sbjct: 406  ERREEVIDYVKRKYGEDHVAQIITFGTMGAKLAIRDVGRVLDIPYNKVDKIAKEIPNALG 465

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+  +   +     D     ++ IS++LEG+ RHASTHAAG+VI   P+ + VP
Sbjct: 466  MTID-KALETNPNLKSLYEQDQETKTIINISKELEGMLRHASTHAAGVVISKNPIDEYVP 524

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPF 603
            +Y+    D   TQF M  +E+ GL+K DFLGL+TLT+++ +LD      G K+D S + +
Sbjct: 525  LYK--HQDAISTQFTMTTLEELGLLKMDFLGLRTLTVIRDALDLIEKNHGRKIDFSKMDY 582

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD + + LL++  TLG+FQ+ES+GMR  ++ ++P   EDI+A +SLYRPGP+D+I  Y  
Sbjct: 583  DDPKVFELLSSGNTLGVFQMESAGMRSFMKQLKPSNFEDIVAGISLYRPGPMDSIPTYLE 642

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             K+  EKI  IH  + P+++ T G +IYQEQVM++ + L GYS   +D++RRAMGKK  +
Sbjct: 643  YKHNPEKITYIHEKLKPIMEVTYGCLIYQEQVMEVVRELGGYSYGRSDLVRRAMGKKKMD 702

Query: 724  EMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             M+++++ FI             G  +NG+ +  A  IF+ +  FA Y FNKSHAAAY V
Sbjct: 703  VMEEERQYFIHGKTDENGNIEIAGCVRNGVDEQTANKIFDDMIDFAKYAFNKSHAAAYGV 762

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            I+Y+TA++K HYPVEF+AA +T  M N +K+ ++ ++    NI+++ P +N     F V 
Sbjct: 763  IAYETAYLKAHYPVEFMAALITSVMGNTDKVVEYIRECNALNIKVLKPDINKSFAKFSVE 822

Query: 832  DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            DN I + LAA+K VG     +I+ E   +  F    +   R+DSK +N+RV+ESL+  G 
Sbjct: 823  DNNIRFGLAAVKNVGVNIINNIVIEREQNGEFTDFINLIKRLDSKDINKRVIESLIKCGG 882

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI---------TLE 941
             D  GY+R  L+   + + +      K       ++F    G   ++          ++ 
Sbjct: 883  FDEMGYNRASLMMGYEKVLESVSLERKKNIKGQISLFDGLDGLGQNEEIDRFENSTTSIA 942

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--------- 992
                     +   E+ VLG Y SGHPL  Y+  L        ++                
Sbjct: 943  SIQEFEEREKLALEKEVLGMYVSGHPLSEYEKELETRTSLNTKKLNEVKENLDKYLAMDQ 1002

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             N+ +  M+ +K+ + T++   + ++   +     E   FP
Sbjct: 1003 ENVIIGGMISNKRIQTTKRNEIMAFLEVEDLYGSIEVIVFP 1043


>gi|108762214|ref|YP_633981.1| DNA polymerase III subunit alpha [Myxococcus xanthus DK 1622]
 gi|108466094|gb|ABF91279.1| DNA polymerase III, alpha subunit [Myxococcus xanthus DK 1622]
          Length = 1185

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1048 (39%), Positives = 612/1048 (58%), Gaps = 37/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL +H+ YSLL+GA+ + +++  +      ++A+TD  N+F A++F +KA  AGI+P
Sbjct: 2    SFTHLHLHTLYSLLDGAIRMKDLIKTVKEKGMSSVAVTDHGNMFGAIDFYKKAKDAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +  +          +          ++L+    EGY  L  L S  Y+        
Sbjct: 62   ILGMEAYVA-----GPKGREDRSEKVSHHLILVAKNEEGYANLRYLSSTAYMHG-FYYHP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI    L E  ++GL  LT    G +  A F      A +    +K +F     ++ +Q 
Sbjct: 116  RIDKKVLAE-HSKGLFALTACLGGEVTSACFRGDMDHARRAAQEYKDIFDPGHFFLEVQS 174

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++ +    + QL+   ++PL AT ++ ++  ED  AH++LM +A    ++   R +
Sbjct: 175  NGMPEQDKANENLKQLSRDLDIPLCATADAHYIKREDARAHELLMCIASGKTLADGKRMK 234

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + D  Y+ + +EM+  F D+PEA+ NT  IA +C+  L++  P+LP F   +       
Sbjct: 235  HSTDKLYVTSPTEMLEFFKDIPEAVHNTQRIAEQCNLELKLGKPMLPTFKVPD----SHT 290

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYH--AQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             ++ +   A  GL  R  + A    Y    + Y+ RL  E+ VI +M F GYFLIV DFI
Sbjct: 291  PDSYMAELAYEGLRERFTELAATVTYPIDREQYQARLALEIGVIQKMGFCGYFLIVQDFI 350

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAKK NIPVGPGRGSGAGS+ AYAL ITD+DP+ ++LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 351  NWAKKMNIPVGPGRGSGAGSLVAYALRITDVDPIPYNLLFERFLNPERVSMPDFDIDFCQ 410

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRRDEVI+YV  KYG   V QIITFGSL+AK+ LRDV R   +P+S+ DR+ KL+P    
Sbjct: 411  DRRDEVIQYVGRKYGEMNVGQIITFGSLKAKSVLRDVCRVFALPFSEGDRIAKLVPEVLN 470

Query: 485  HPVSLQAIADDSRFREARLADPSV----------DRLLEISQKLEGLYRHASTHAAGIVI 534
              +  +AI  + R +E      ++            +LEI+  LEGL+R    HAAG+VI
Sbjct: 471  ITL-REAIEMEPRLKEMMETPSNIGEVEGKPVTTRDVLEIALALEGLHRQPGMHAAGVVI 529

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             D+PL + VP+Y+       +TQF    +E AGL+KFDFLGLKTLT++Q +LD + +   
Sbjct: 530  ADKPLWEFVPVYQPPGEKTLITQFAKDEVEAAGLVKFDFLGLKTLTVIQHALDLVKRNHG 589

Query: 595  KVDLSL-IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            K      IP +D +T+ L+    T GIFQ+ESSG  + +  ++P+C ED+IA  +LYRPG
Sbjct: 590  KDIPRHEIPLNDEKTWELMAKGDTAGIFQMESSGFTEMVVKLKPNCFEDVIAAGALYRPG 649

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D+ +V  + NRK+G+EK+   HP ++P+LK+T GVI+YQEQVMQI+Q+L GY+L  AD
Sbjct: 650  PLDSGMVDVFINRKHGREKVSYPHPALEPVLKDTYGVIVYQEQVMQISQVLGGYTLGRAD 709

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  E M  ++  F+ G +KN +   +A  IF+L+ KFA+YGFNKSH+AAY +
Sbjct: 710  LLRRAMGKKKAEVMQAERAGFLEGCAKNNVDLKVAGEIFDLMEKFAEYGFNKSHSAAYGL 769

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++  TAW+K HYP EF+AA ++ E DN +K+ K   +AR+  ++++PP VN   ++F   
Sbjct: 770  VTIHTAWLKAHYPCEFMAALLSSEKDNTDKVVKHIGEARESGLEVLPPDVNQSDMEFGAV 829

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              +I + L AIKGVG      I+EA  D  F SL DFC RVDS+K+NR+V+E+LV AG+ 
Sbjct: 830  SGKIRFGLGAIKGVGEGAIESILEARKDGSFKSLFDFCERVDSRKVNRKVMEALVKAGSF 889

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD------KITLEKFSV 945
            D    SR Q+  +++         +K++     ++F    G  SD      K    +   
Sbjct: 890  DFEKRSRRQIFDTIEKAMNRGSASQKDKAAGQSSLFGMLAGPSSDGGGGGLKDDYVEVED 949

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             +   R   E+  +GFY SGHPL  Y   L++   +         + + + +A +V   +
Sbjct: 950  WSEKERLSLEKEAIGFYVSGHPLHQYDKELKRYA-RPITAVQRARKDDKLTVAGIVTVLR 1008

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            ++ T+ G R+ WVT  + +   E   FP
Sbjct: 1009 ERPTKTGKRMAWVTIEDLSGSIELVCFP 1036


>gi|327194832|gb|EGE61666.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CNPAF512]
          Length = 1165

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 643/1031 (62%), Positives = 810/1031 (78%), Gaps = 6/1031 (0%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P F+HL+VHS+YSLLEGAL L  IL K A D QPAIAITDTNNLF ALEFSQKA   G+
Sbjct: 16   TPGFIHLRVHSAYSLLEGALPLKKILYKAAGDNQPAIAITDTNNLFVALEFSQKAMDDGL 75

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            QPIIGCQ+ IDM+D L+   +G       +PSIVLL +T  GY+RL++LVSR YL     
Sbjct: 76   QPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATEAGYERLVDLVSRAYLGGDSN 135

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q++ I  SWL+E GTEGLI LTG  +GP+D A        AE RLLT K+LFGDRLYV L
Sbjct: 136  QAIHIRASWLEEAGTEGLIALTGALTGPVDAAIREGHPAQAEARLLTLKRLFGDRLYVEL 195

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            QRH  YD+  E ++V LAY H+LPLVATN + F + +DY+AHD LMAVAH+ +VS   R 
Sbjct: 196  QRHGTYDKRHEQKIVGLAYAHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQ 304
            R+TPDHYLK+R+EM  +F+DLPEALENT+EIARRCSF+L+   PILPRF     + ++ +
Sbjct: 256  RLTPDHYLKSRAEMAKLFADLPEALENTIEIARRCSFVLKTRKPILPRFTGATDDAEEAE 315

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            + E  ELR +AV GL++RL+   ++ GY  +DYR+RL+FEL+VI RM+F GYFLIVADFI
Sbjct: 316  RAEAGELRRQAVEGLDMRLSTLGMSPGYEEKDYRERLEFELSVIERMRFPGYFLIVADFI 375

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 376  KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA
Sbjct: 436  DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495

Query: 485  HPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +P    +AI ++ + +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV
Sbjct: 496  NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VDL+ IP 
Sbjct: 556  PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKRGISVDLAAIPL 615

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN 
Sbjct: 616  DDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNA 675

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G E++ SIHP+ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK 
Sbjct: 676  RKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMD+Q+ERF+ GA KNG+SK  A NIFELLAKFA+YGFNKSHAAAYA++SYQTA+MK HY
Sbjct: 736  EMDQQRERFVDGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASMTL+M N EK+  F QDA++  I+++ PSV T    F+ GDNRIYY+LAA+K
Sbjct: 796  PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRQFETGDNRIYYALAALK 855

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG +   HI+E   D PF  +EDFC R+D +++NRRVLESL++AGA DCFG  R QL  
Sbjct: 856  GVGESAVDHIVEVRGDTPFAGIEDFCLRIDPRQVNRRVLESLIYAGAFDCFGTDRAQLSA 915

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             LD I  YAQ  ++N+ +   +IF     +  +KI L  FS   +S R   E +VLGFY 
Sbjct: 916  GLDRILGYAQRAQENKLSGQSDIFGSTLTSGPEKIALPPFSPWLASERLLKEFQVLGFYL 975

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            + HPLD Y  IL+KM ++ + E  A I+   +N RLA  V+SKQ++KTR G+++G + FS
Sbjct: 976  TAHPLDSYSNILQKMRVQTFAEFSAAIKQGASNARLAGTVISKQERKTRTGNKMGIIVFS 1035

Query: 1022 EPAKEYEANFF 1032
            + + ++EA  F
Sbjct: 1036 DSSGQFEAVLF 1046


>gi|153009730|ref|YP_001370945.1| DNA polymerase III subunit alpha [Ochrobactrum anthropi ATCC 49188]
 gi|151561618|gb|ABS15116.1| DNA polymerase III, alpha subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 1163

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 594/1031 (57%), Positives = 772/1031 (74%), Gaps = 8/1031 (0%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   G+
Sbjct: 16   TPRFVHLRVHSAYSLLEGALPLGKIIKQAIADEAPAIAVTDTNNLFGALEFAQKASKDGL 75

Query: 68   QPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            QPIIGCQ+DI   D+        +     +  +VLL +T EGY  ++ LVSR +L     
Sbjct: 76   QPIIGCQVDIAFGDHNDNGRSVNRRVALDLAPVVLLAATEEGYANIVRLVSRAFLETPAG 135

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              V +  SWL  + ++ +I+L+GG+ GPI RAF  +    AE RL   ++ FGDRLYV L
Sbjct: 136  DPVHVEASWLPPL-SKDVIVLSGGALGPIGRAFAADRPDRAEARLGFLREAFGDRLYVEL 194

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            QR  GY+R  E++ V LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  DR 
Sbjct: 195  QRQAGYNRALEAKTVALAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDDRR 254

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD--IQ 304
            R+TPDH++K+R+EM ++F+DLPEAL+NTVEIA RCS+  Q  APILPRF  +  D     
Sbjct: 255  RLTPDHHMKSRAEMAALFADLPEALDNTVEIAERCSWYTQTRAPILPRFTGESDDAEAAV 314

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +EE +EL  +A  GL++RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVADFI
Sbjct: 315  QEEADELARQAREGLKMRLETVGLAEGYTTEQYAERLEYEIGIITRMKFPGYFLIVADFI 374

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQ
Sbjct: 375  KWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDFCQ 434

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +PA
Sbjct: 435  DRREEVIRYVQGKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQNPA 494

Query: 485  HPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +PVS  QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+LV
Sbjct: 495  NPVSLAQAIDTEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSELV 554

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++  +A++GV++DLS +P 
Sbjct: 555  PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLETAVKLVARKGVEIDLSHVPL 614

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD IEDIIALV+LYRPGP++NI  YN 
Sbjct: 615  DDELTYEMLSRGETVGVFQVESAGMRKALLGMRPDRIEDIIALVALYRPGPMENIPTYNA 674

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI+E
Sbjct: 675  RKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIRE 734

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK HY
Sbjct: 735  EMDKQRVRFVDGAIEGGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKAHY 794

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF+AASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAAIK
Sbjct: 795  PVEFIAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVMTSFRPFEVGEKQIFYSLAAIK 854

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG     HI++  A+KPF+SLEDFC RVD + +NRRVLESL+ AGA+DCFG  R  +  
Sbjct: 855  GVGEAAVDHIVDVRAEKPFESLEDFCERVDPRIVNRRVLESLINAGAMDCFGRERPAMSA 914

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             +D I  +AQ  ++N  +   +IF    G   + + L + +    S     E + +GFY 
Sbjct: 915  GMDRIMGFAQRTQENAASGQSDIFG-LSGAPKETLILPQAAPWLPSEMLHREFQAVGFYL 973

Query: 964  SGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            S HPLD Y+ +L +M ++ + +   A  RG N  RLA  V ++Q++KTR G+++G V  S
Sbjct: 974  SAHPLDEYRDVLNRMRVQSWADFSAAVKRGANAGRLAGTVTARQERKTRTGNKMGIVQLS 1033

Query: 1022 EPAKEYEANFF 1032
            + + ++EA  F
Sbjct: 1034 DASGQFEAVLF 1044


>gi|330837734|ref|YP_004412375.1| DNA polymerase III, alpha subunit [Spirochaeta coccoides DSM 17374]
 gi|329749637|gb|AEC02993.1| DNA polymerase III, alpha subunit [Spirochaeta coccoides DSM 17374]
          Length = 1170

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1029 (38%), Positives = 603/1029 (58%), Gaps = 23/1029 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              FVHL  H+ YSLL+GA S+   + K       A+AITD  N+F A +F +   AA I+
Sbjct: 2    SGFVHLHNHTDYSLLDGAGSIPKYIAKAKELGMNALAITDHGNMFGAHKFYKACKAADIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC+  +  + +     +G    P    ++LL    +GY  L+EL S  Y ++     
Sbjct: 62   PIIGCEFYVAPESHT--LREGVEGKPRAYHLILLAMNEKGYHNLMELNSISY-VEGFYYK 118

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
             RI    L E   EG++ L+    G I      N  + A+K  L    +F G R Y+ +Q
Sbjct: 119  PRIDHE-LIEQHNEGVLCLSACLGGEIASLLKDNRYEDAKKAALWHASVFDGGRYYLEIQ 177

Query: 188  RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   ++      + +L+    +PLVATN+  ++++ D  AHD+L+ +      ++ DR 
Sbjct: 178  DHGLPEQKTVNQALARLSTETGIPLVATNDIHYINKSDANAHDILLCIGMGKKKNEADRM 237

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  + ++Y+K+  EM   F   P+A+ENTV+IA  C+  +    P LPRF   +      
Sbjct: 238  RFHSAEYYMKSAEEMEKQFLWCPQAVENTVKIADLCNLEIHFPGPRLPRFRVPKGF---- 293

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             +++ LR+ +  GL  R A+          D  +RLD+EL+VI +M F GYFLIV D+I 
Sbjct: 294  TDDSYLRHLSHEGLARRYAE-------VTPDLEKRLDYELDVIIQMGFQGYFLIVRDYIY 346

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK+ +IPVGPGRGSGAGS+ AY   ITD+DP++++LLFERFLNP+R +MPDFDIDFC +
Sbjct: 347  WAKQRDIPVGPGRGSGAGSLVAYCTEITDVDPIKYNLLFERFLNPERKTMPDFDIDFCFE 406

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             R EVI YV   YG + VAQI TFG+L+AKA ++DV R L +P+ + +R+ K+IP+DP  
Sbjct: 407  HRQEVIEYVTEHYGEDHVAQIATFGTLKAKAVVKDVARVLDIPFEESNRIAKMIPDDPKM 466

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +    +      ++   A      L + + +LEGL RH STHAAG+VIG++ L   VP+
Sbjct: 467  TLKKA-LEQSPELKQVADAGGIYGELFDAAFRLEGLNRHTSTHAAGVVIGEKKLLTYVPL 525

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            YRD ++    TQF M  +E+ GL+K D LGLKTLTL++ ++D + +      +  I  +D
Sbjct: 526  YRDAKTGAISTQFTMDQLEENGLVKMDLLGLKTLTLIKHTVDLVHKTNPGFSIEDINEED 585

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T+ +L    +  +FQ ES+GM++ L    P+ IED++AL +LYRPGP+D I  +   K
Sbjct: 586  EKTFDMLRRGDSACVFQFESTGMQKILRDALPNSIEDLVALNALYRPGPMDYIPQFVESK 645

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+  I   HP ++  LK T GVI+YQEQVM++AQ++ GY+L  AD+LRR M KK  EE+
Sbjct: 646  NGRMPITYAHPDLEETLKTTYGVIVYQEQVMKVAQIIGGYTLGAADILRRIMSKKKAEEL 705

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
              Q+ +F+ GA   G  + +A  IF++L  FA YGFNKSHA AY+VI+YQTA++K +YP 
Sbjct: 706  AAQEVKFVEGALAKGYQEKLARYIFKMLEPFAGYGFNKSHAVAYSVIAYQTAFLKANYPA 765

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+AA++T E++N +K  ++ ++A+   I+++PPS+N     F   + +I Y LA IK V
Sbjct: 766  EFMAANLTNEINNPDKFSEYLREAKHMGIEVLPPSINYSERQFNAVEGKIVYGLAGIKNV 825

Query: 846  GTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            G   A  I+       P++S  DF  RVDS+ +N ++LESL+ AG  D    +R  L+++
Sbjct: 826  GEGVADLIIRERNEHGPYESFIDFLVRVDSRAMNSKLLESLIKAGTFDSMEENRPTLIEN 885

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            ++    YAQ  ++++ +   ++F   +G   D  T+ +        + E E+ +LGFY S
Sbjct: 886  MEAAVIYAQKQKESKESGQSSLF---EGDDIDSFTMTRHPDWEMREKLEIEKALLGFYIS 942

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            GHPLD+Y+   ++  +  +       R   I L AM+   +   T+K + +G++   + +
Sbjct: 943  GHPLDLYRDAWKRSVLVDFSRPERFPRNRQISLVAMITDIRTLMTKKQTMMGFLELVDFS 1002

Query: 1025 KEYEANFFP 1033
               EA  FP
Sbjct: 1003 GTLEATCFP 1011


>gi|222148298|ref|YP_002549255.1| DNA polymerase III subunit alpha [Agrobacterium vitis S4]
 gi|221735286|gb|ACM36249.1| DNA polymerase III alpha chain [Agrobacterium vitis S4]
          Length = 1179

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 643/1029 (62%), Positives = 793/1029 (77%), Gaps = 6/1029 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS+YSLLEGAL L  IL K+A+DQQPAIAITDTNNLF ALEFSQKA + G+Q
Sbjct: 33   PGFVHLRVHSAYSLLEGALPLKKILSKVASDQQPAIAITDTNNLFIALEFSQKALSDGLQ 92

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGCQL IDM+D  +   +G +     P+IVLL +   GY+RL++LVSR YL     QS
Sbjct: 93   PIIGCQLSIDMEDANE-EKRGNSSLAKYPAIVLLAADPAGYERLVDLVSRAYLQGDNTQS 151

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            V I  SWL+EIGT+GLI LTG + GP+D          A  RL T K LFGDRLY+ LQR
Sbjct: 152  VHITASWLEEIGTDGLIALTGATGGPVDLPVKDGHHAQALSRLQTLKSLFGDRLYIELQR 211

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            H+GYDR  ES+++ LAY H++PLVATN + F S +DY+AHD LMAVAH+ +VS   R R+
Sbjct: 212  HQGYDRVHESRMIALAYDHDIPLVATNEAFFPSRDDYDAHDALMAVAHNAIVSDDRRFRL 271

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            TPDHYLK+R EM ++F DLPEALENTVEIA RCSF+L    PILPRF     D  + E  
Sbjct: 272  TPDHYLKSRKEMQTLFRDLPEALENTVEIASRCSFVLDTRNPILPRFTGGSDDPEEAERA 331

Query: 309  NE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR +A+ GL+ RLA+  +A GY  ++YR RLDFEL VI RMKF GYFLIVADFI+W
Sbjct: 332  EAGELRRQAIEGLDDRLAKLGMAPGYDEKEYRDRLDFELGVIERMKFPGYFLIVADFIKW 391

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK  +IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQDR
Sbjct: 392  AKSQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQDR 451

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVDR+CKL+PN+PA+P
Sbjct: 452  REEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDRICKLVPNNPANP 511

Query: 487  VS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                +AI ++ +F+E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LVPM
Sbjct: 512  TPLSKAIEEEPKFQEEAEKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLVPM 571

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            YRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF   R +++DL+ IP DD
Sbjct: 572  YRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFCRLRDIEIDLATIPLDD 631

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI VYN RK
Sbjct: 632  EKTYQMLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYNARK 691

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+E+I SIHP ID +LKETQGVI+YQEQVMQ+AQ+LSGYSL EAD+LRRAMGKKIKEEM
Sbjct: 692  HGEEEIESIHPTIDYLLKETQGVIVYQEQVMQVAQVLSGYSLGEADLLRRAMGKKIKEEM 751

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            DKQ+ RF+ GA KNG+SK  A NIF+LLAKFA+YGFNKSHAAAYA++SYQTA+MK HYPV
Sbjct: 752  DKQRARFVDGAVKNGVSKPQADNIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYPV 811

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EFLAASMTL+M N EK+  F QDA +  I+++PPSV T    F+ G NRIYYSLAA+KGV
Sbjct: 812  EFLAASMTLDMANTEKLVDFRQDAGRLGIEVVPPSVQTSFRHFQTGPNRIYYSLAALKGV 871

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G     HI+    D PF  LEDFC R+D K++NRRV ESL+FAGA DCFG  R +LL  +
Sbjct: 872  GDAAVEHIVTVRGDTPFADLEDFCLRIDPKQINRRVFESLIFAGAFDCFGRDRPELLAGM 931

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D I  YAQ  ++N  +   ++F     T  ++I+   ++    S +   E +VLGFY S 
Sbjct: 932  DRIIGYAQRAQENAVSGQSDMFGSGGATGPERISFPTYTPWLPSEKLMREFQVLGFYLSA 991

Query: 966  HPLDVYKPILRKMGIKGYEESV-ATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            HPLD YKP+L KM ++ + +   A  +G    RLA  V+SKQ++KTR G+++G VTFS+ 
Sbjct: 992  HPLDTYKPLLEKMRVQNFVDFSGAVRQGATAGRLAGTVISKQERKTRTGNKMGIVTFSDA 1051

Query: 1024 AKEYEANFF 1032
              ++EA  F
Sbjct: 1052 TGQFEAVLF 1060


>gi|302337842|ref|YP_003803048.1| DNA polymerase III subunit alpha [Spirochaeta smaragdinae DSM 11293]
 gi|301635027|gb|ADK80454.1| DNA polymerase III, alpha subunit [Spirochaeta smaragdinae DSM 11293]
          Length = 1141

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1029 (39%), Positives = 603/1029 (58%), Gaps = 20/1029 (1%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL  H+ YSLL+GA  ++ +++K  +     +AITD  N+F  L F +   A  I 
Sbjct: 2    PDFVHLHNHTDYSLLDGAAPIDKMVEKAVSFGMKHLAITDHGNMFGVLRFYKACKAHEIN 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            P+IGC++ +           G         +VLL   +EGY+ LI+L SR Y  +     
Sbjct: 62   PLIGCEVYVAPGSRHVKN--GSEKGNRYQHLVLLARNSEGYKNLIQLCSRGYT-EGFYYK 118

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
             RI    L++    GL  L+   +G I        ++ AE++   +++LFG +  ++ +Q
Sbjct: 119  PRIDDELLEQY-NGGLTALSACLAGAIPSMIMNGKAEEAEQKANYYRELFGKEHFFLEMQ 177

Query: 188  RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   ++     ++V+++    +PLVATN+  +L   D  A D+L+ +  +    ++DR 
Sbjct: 178  DHGIPEQKTVNKELVRISKKTGIPLVATNDIHYLDRADASAQDILLCIGTNRKRREQDRM 237

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  +   Y+K++ EM   F ++PEAL NT+ +A +C+  + +  PILP +         +
Sbjct: 238  RFHSDQFYMKSQEEMAETFREIPEALSNTLRVAEQCNLEIDLPGPILPEYEIP---PEFE 294

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR+    GL+ R             +  QR + EL +I  M F GYFLIV DFI 
Sbjct: 295  NLGDYLRHLTFEGLKKRYP-------SLTDEIVQRAEKELGIINSMHFPGYFLIVWDFIH 347

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK+++IPVGPGRGSGAGS+ AYALTITDIDPL++ LLFERFLNP+R+SMPDFD+DFC +
Sbjct: 348  YAKQHDIPVGPGRGSGAGSIVAYALTITDIDPLKYQLLFERFLNPERVSMPDFDVDFCFE 407

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV  KYG ++V QIITFG+L+AKA ++DV R L +P+++ D++ KLIPND   
Sbjct: 408  RRQEVIDYVNRKYGKDKVGQIITFGTLKAKAVVKDVARVLDIPFAEADKISKLIPNDLKI 467

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +    +  + + +E          L++ +++LEGL RHASTHAAG+VIG + L++ VP+
Sbjct: 468  TIDKA-LEQEPQLKELMDQGGVYGELIDAARRLEGLSRHASTHAAGVVIGRKALTEYVPL 526

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            YRD ++    TQF M  +E+ GL+K DFLGLKTLTL++ + D + +R    D+  +P DD
Sbjct: 527  YRDSKTGSISTQFTMDQLEECGLVKMDFLGLKTLTLIKHTEDLIHRRDKDFDIERVPEDD 586

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T+ LL    +  +FQ ESSGM+  L+   P  IED+IAL +LYRPGP+  I  Y   K
Sbjct: 587  PATFTLLGEGKSTCVFQFESSGMQNILKQAHPTSIEDLIALNALYRPGPMQYIPQYIASK 646

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+++I    P ++ +LK T GVI+YQEQVMQ+AQ++ G+SL +AD+LRRAMGKK  +EM
Sbjct: 647  SGEQEIRYPDPSLEEVLKPTYGVIVYQEQVMQVAQIIGGFSLGKADILRRAMGKKKVKEM 706

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             K K  FI GA K G +K  A  IFE+L  FA YGFNKSHAAAY+V++Y+TA++K +YP 
Sbjct: 707  AKMKLEFIEGAVKKGHTKEHADEIFEMLVPFAGYGFNKSHAAAYSVVAYKTAYLKANYPA 766

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF+AA++T E++N +K+  +  +A+   I ++PP VN    +F V D +I Y L  IK V
Sbjct: 767  EFMAANLTNEINNPDKLAFYIGEAKTMGIDLLPPEVNISEKNFSVSDGKIVYGLIGIKNV 826

Query: 846  GTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            GT     I+ A  +  PF+ + D   RVD K +NR+VLE+L+  GALD FG +R  LL++
Sbjct: 827  GTNAVEEIVRAREEGGPFEDIFDLLDRVDMKTVNRKVLETLIECGALDSFGINRSTLLEN 886

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYF 963
            L+ + +     ++       ++F          K  L              E+ +LGFYF
Sbjct: 887  LERVMEVVSKKKEGEQFGQSSLFDDGNEEEMPWKTDLTPAEPLPKMEVLRRERELLGFYF 946

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            SGHP+D +K   +             I      L AMV S +   T+KG  + ++   + 
Sbjct: 947  SGHPMDDFKDRWKSAVNIDLSRPDRFIPERTYTLIAMVTSLRTIITKKGRPMAFLQLEDY 1006

Query: 1024 AKEYEANFF 1032
              + E+  F
Sbjct: 1007 NGKIESVVF 1015


>gi|206602357|gb|EDZ38838.1| DNA polymerase III, alpha subunit [Leptospirillum sp. Group II '5-way
            CG']
          Length = 1201

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1045 (39%), Positives = 611/1045 (58%), Gaps = 21/1045 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL VH+ YSLL+GA  ++ ++ K  A+  PAIA+TD  NLF A+EF Q A  
Sbjct: 1    MSSTDQFVHLHVHTQYSLLDGANKIDPLIRKARAENMPAIAMTDHGNLFGAIEFFQTAKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKM---------TNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
             G++PIIGC++ I  +               +QG+        ++LL     GY+ L+++
Sbjct: 61   HGVKPIIGCEVYITPRSRFDRSDLYFGGDGPHQGRKINNASFHLILLAENDTGYRNLLKI 120

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  +L +      RI L  L     EGLI L+G   G I        +  A      F+
Sbjct: 121  VSLSHL-EGFYYRPRIDLELLSRYH-EGLIALSGCLKGQISYMLTRGDTDRAYATAGLFR 178

Query: 176  KLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            ++FG +  +  +Q +   D+     +++ L+    +PLVATN+  +L  ED   HD+L+ 
Sbjct: 179  EIFGPENYFFEVQANGLEDQRIANREIIGLSKKLSIPLVATNDCHYLEREDSVPHDILLC 238

Query: 234  VAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            +     +    R R  + + YLK   EM+  F +LPEA+ENT+ IA R    + +    +
Sbjct: 239  LQTGKTLEDPARLRFGSDEFYLKTPREMIRSFEELPEAIENTLRIAERIDVSIDLQTTHM 298

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P +   E               +  GL+ R  + A +       Y +RL+ E+ VI +M 
Sbjct: 299  PSYRLDEIQGQTTTVPELFVRTSREGLDARFLENAFSDAEKT-LYLERLEREIQVIQKMG 357

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            + GYFLIV DFI+ A++  IPVGPGRGS AGSV A++L IT+IDP+RF LLFERFLNP+R
Sbjct: 358  YEGYFLIVWDFIRKAREMGIPVGPGRGSAAGSVVAWSLRITNIDPIRFGLLFERFLNPER 417

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +S+PD D+DFC +RR EVI+YV ++YG +RVA I TFG++ AK ++RDVGR L M Y++V
Sbjct: 418  VSLPDIDVDFCMNRRGEVIQYVVDRYGMDRVAMIATFGTMGAKGSIRDVGRVLGMTYAEV 477

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            DR+ K+IPN     +    + ++   R     DP ++ L  +S+KLEG+ RH+S HAAG+
Sbjct: 478  DRVAKMIPNSLDMTLEKA-LEENPDLRSLLEKDPRMEELFSLSRKLEGITRHSSIHAAGV 536

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            VI   PL + VP+ +   +   VTQF    +EK GL+KFDFLGL TLTL+  + + +   
Sbjct: 537  VISREPLLEHVPLMKGA-NGEIVTQFTKDDVEKVGLVKFDFLGLTTLTLIHGAENRIRAH 595

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                    IP DD  TY LL+   TLGIFQLES GM   +  MQP+  ED+IAL++LYRP
Sbjct: 596  TPDFSADRIPLDDPRTYRLLSEGKTLGIFQLESRGMTDLIMKMQPETFEDLIALLALYRP 655

Query: 653  GPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GPI++ +   +  RK    +I    P ++P+L+ET GVI+YQEQVMQIA +L+G+SL EA
Sbjct: 656  GPINSGMVDDFIKRKKNPREIRYELPELEPVLRETYGVIVYQEQVMQIANVLAGFSLGEA 715

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM K +++F+ GA + G  K  A ++FEL+A FA YGFNKSH+AAYA
Sbjct: 716  DLLRRAMGKKKPEEMAKMQDKFVEGAVRKGFPKEKATHVFELMAYFAGYGFNKSHSAAYA 775

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +ISYQTA++KTHYP+E  AA +T  +D+ EKI  F   A+   I+++ P +N    DF +
Sbjct: 776  LISYQTAYLKTHYPLELWAALLTNALDDTEKIGVFLAGAKDMGIEVLAPDINQSEFDFAI 835

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
               +RI + L A+K VG      I+EA A D PF    DF  R+  KK+NRRV+E+L+ A
Sbjct: 836  LPGSRILFGLGAVKNVGKQAVDCILEARAQDGPFTDFPDFLKRIVGKKVNRRVIEALIRA 895

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA    G  R   ++SLD++  +A+  +  + +  +++F+ ++G  S    L +    + 
Sbjct: 896  GAFRSLGIRRAVAMESLDDLLAWAEKQKSGKGSMQKSLFSEDQGGRSFGPPLREVPEWDE 955

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             +    E+  LGFY + HP+  Y  +L K+  +      A   G  +R+ A+V + ++ K
Sbjct: 956  RMLLREEKNALGFYLTSHPMARYADLLLKLDTRSTRSLEAISEGETVRVFAVVSALREVK 1015

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            T+KG ++  +T  +     EA  FP
Sbjct: 1016 TKKGDKMAQLTLLDMEGTIEAVLFP 1040


>gi|291086960|ref|ZP_06345005.2| DNA polymerase III alpha subunit [Clostridium sp. M62/1]
 gi|291076483|gb|EFE13847.1| DNA polymerase III alpha subunit [Clostridium sp. M62/1]
          Length = 1197

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1054 (36%), Positives = 579/1054 (54%), Gaps = 45/1054 (4%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            +Y+    +F HL VH+ YSLL+ +  +  ++ +       ++AITD   ++  ++F + A
Sbjct: 37   EYM----AFTHLHVHTEYSLLDASSKIKELVARAKELGMDSLAITDHGVMYGVIDFYRAA 92

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              AGI+P++GC++ +          +          ++LL    EGYQ L+++VS  + +
Sbjct: 93   REAGIKPVLGCEIYVAPGSRFDR--EIGAGEDKYYHLILLAENNEGYQNLMKIVSTGF-V 149

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-R 181
            +      R+    L+     GLI L+   +G + R       +  +K  L ++ +FG+  
Sbjct: 150  EGFYYKPRVDFETLERYSR-GLICLSACLAGEVQRNLARGMYEEGKKAALRYQSIFGEGN 208

Query: 182  LYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             ++ LQ H    +      +++++    +PLVATN+  ++  ED ++HD+L+ +     V
Sbjct: 209  FFLELQDHGIPLQKTVNQGLLRMSQDTGIPLVATNDCHYIYREDEKSHDILLCIQTGKKV 268

Query: 241  SQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            + ++R R     +YLK+  EM SIF    EALENT +IA RC+  ++     +P+F    
Sbjct: 269  ADENRMRYEGGQYYLKSEEEMKSIFPYALEALENTHKIAERCNVEIEFGVTKIPQFDVPG 328

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 K     L      G   R               R+RLD+EL+VI  M +  YFLI
Sbjct: 329  G----KTSWEYLNELCEEGFRTRYPDDDGTL-------RKRLDYELSVIQSMGYVDYFLI 377

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI +A+ ++I VGPGRGS AGS+ +Y L ITDIDP+R++LLFERFLNP+R+SMPD D
Sbjct: 378  VWDFIHFARSHDIMVGPGRGSAAGSIVSYCLRITDIDPIRYNLLFERFLNPERVSMPDID 437

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC +RR EVI YV  KYG +RV QI+TFG+L AK  +RDVGR L MPY++ D + K+I
Sbjct: 438  IDFCFERRQEVIDYVVQKYGRDRVVQIVTFGTLAAKGVVRDVGRVLDMPYAKCDAVAKMI 497

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P D    +           REA  +DP +  L+++S++LEGL RH S HAAG+VI    +
Sbjct: 498  PGDLGMTLDKAL--KTPELREAYDSDPEIKYLIDMSRRLEGLPRHTSMHAAGVVISRNKV 555

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
             + VP+ R        TQF M  +E+ GL+K DFLGL+TLT++Q ++    +   +K+DL
Sbjct: 556  DEYVPLSRAA-DGSITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVRQAEKTHHIKIDL 614

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + I ++D      L T    G+FQLESSGM+  ++ ++P+ +EDIIA +SLYRPGP+D I
Sbjct: 615  NKIDYNDKAVLESLGTGKNDGVFQLESSGMKSFMKELKPENLEDIIAGISLYRPGPMDFI 674

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y   KN +  I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D++RRAM 
Sbjct: 675  PKYLKGKNDRASITYDCPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMS 734

Query: 719  KKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            KK    M+K+++ F+         G   NGI +  A  I++ +  FA Y FNKSHAAAYA
Sbjct: 735  KKKAAVMEKERQNFVYGNPEEGVKGCIANGIDEKTANIIYDEMIDFAKYAFNKSHAAAYA 794

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            V+SYQTA++K +YPVEF+AA MT   DNV K+ ++    RQ  ++IMPP +N     F V
Sbjct: 795  VVSYQTAYLKYYYPVEFMAALMTSVKDNVSKVSEYILTCRQMGMKIMPPDINEGEGGFSV 854

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +  I Y L+A+K +G T    I++      PF SL DF  R+ +K++N+R +ES + +G
Sbjct: 855  SNGAIRYGLSALKSIGQTVVDEIVKERTERGPFVSLADFIDRMSNKEVNKRTIESFIKSG 914

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVEN 947
            ALD    +R Q       + +     +KN      ++F    E+     +IT        
Sbjct: 915  ALDSLPGTRKQKFLVSAALLEQKNKEKKNSMEGQMSLFDFVEEEEKEQFQITFPDVGEYT 974

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAA 999
                   E+ +LG Y SGHPL+ Y  + +K       +              G+ + +  
Sbjct: 975  KEELLAFEKEMLGVYVSGHPLEEYMDLWKKNVTAVSSDFIVDEEEGHAKVRDGSYVTIGG 1034

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            M+  K  K TR+   + ++T  + A   E   FP
Sbjct: 1035 MITEKTVKTTRQNKMMAFITVEDLAGTVEVLIFP 1068


>gi|295091058|emb|CBK77165.1| DNA polymerase III catalytic subunit, DnaE type [Clostridium cf.
            saccharolyticum K10]
          Length = 1159

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1047 (36%), Positives = 576/1047 (55%), Gaps = 41/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+ +  +  ++ +       ++AITD   ++  ++F + A  AGI+P
Sbjct: 2    AFTHLHVHTEYSLLDASSKIKELVARAKELGMDSLAITDHGVMYGVIDFYRAAREAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC++ +          +          ++LL    EGYQ L+++VS  + ++      
Sbjct: 62   VLGCEIYVAPGSRFDR--EIGAGEDKYYHLILLAENNEGYQNLMKIVSTGF-VEGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+    L+     GLI L+   +G + R       +  +K  L ++ +FG+   ++ LQ 
Sbjct: 119  RVDFETLERYSR-GLICLSACLAGEVQRNLARGMYEEGKKAALRYQSIFGEGNFFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +      +++++    +PLVATN+  ++  ED ++HD+L+ +     V+ ++R R
Sbjct: 178  HGIPLQKTVNQGLLRMSQDTGIPLVATNDCHYIYREDEKSHDILLCIQTGKKVADENRMR 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +YLK+  EM SIF    EALENT +IA RC+  ++     +P+F         K 
Sbjct: 238  YEGGQYYLKSEEEMKSIFPYALEALENTHKIAERCNVEIEFGVTKIPQFDVPGG----KT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      G   R               R+RLD+EL+VI  M +  YFLIV DFI +
Sbjct: 294  SWEYLNELCEEGFRTRYPDDDGTL-------RKRLDYELSVIQSMGYVDYFLIVWDFIHF 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ ++I VGPGRGS AGS+ +Y L ITDIDP+R++LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 347  ARSHDIMVGPGRGSAAGSIVSYCLRITDIDPIRYNLLFERFLNPERVSMPDIDIDFCFER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG+L AK  +RDVGR L MPY++ D + K+IP D    
Sbjct: 407  RQEVIDYVVQKYGRDRVVQIVTFGTLAAKGVVRDVGRVLDMPYAKCDAVAKMIPGDLGMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +           REA  +DP +  L+++S++LEGL RH S HAAG+VI    + + VP+ 
Sbjct: 467  LDKAL--KTPELREAYDSDPEIKYLIDMSRRLEGLPRHTSMHAAGVVISRNKVDEYVPLS 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            R        TQF M  +E+ GL+K DFLGL+TLT++Q ++    +   +K+DL+ I ++D
Sbjct: 525  RAA-DGSITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVRQAEKTHHIKIDLNKIDYND 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                  L T    G+FQLESSGM+  ++ ++P+ +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 584  KAVLESLGTGKNDGVFQLESSGMKSFMKELKPENLEDIIAGISLYRPGPMDFIPKYLKGK 643

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N +  I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D++RRAM KK    M
Sbjct: 644  NDRASITYDCPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKKAAVM 703

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +K+++ F+         G   NGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 704  EKERQNFVYGNPEEGVKGCIANGIDEKTANTIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 763

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YPVEF+AA MT   DNV K+ ++    RQ  ++IMPP +N     F V +  I Y
Sbjct: 764  YLKYYYPVEFMAALMTSVKDNVSKVSEYILTCRQMGMKIMPPDINEGEGGFSVSNGAIRY 823

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+A+K +G T    I++      PF SL DF  R+ +K++N+R +ES + +GALD    
Sbjct: 824  GLSALKSIGQTVVDEIVKERTERGPFVSLADFIDRMSNKEVNKRTIESFIKSGALDSLPG 883

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q       + +     +KN      ++F    E+     +IT               
Sbjct: 884  TRKQKFLVSAALLEQKNKEKKNSMEGQMSLFDFVEEEEKEQFQITFPDVGEYTKEELLAF 943

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQQ 1006
            E+ +LG Y SGHPL+ Y  + +K       +              G+ + +  M+  K  
Sbjct: 944  EKEMLGVYVSGHPLEEYMDLWKKNVTAVSSDFIVDEEEGHAKVRDGSYVTIGGMITEKTV 1003

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K TR+   + ++T  + A   E   FP
Sbjct: 1004 KTTRQNKMMAFITVEDLAGTVEVLIFP 1030


>gi|227821642|ref|YP_002825612.1| DNA polymerase III subunit alpha [Sinorhizobium fredii NGR234]
 gi|227340641|gb|ACP24859.1| DNA polymerase III, alpha subunit [Sinorhizobium fredii NGR234]
          Length = 1165

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 645/1037 (62%), Positives = 799/1037 (77%), Gaps = 8/1037 (0%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
               ++  P FVHL+VHS++SLLEGAL L  I+ K  AD+QPAI I DTNNLF+ALEFSQK
Sbjct: 12   AGAMD--PQFVHLRVHSAFSLLEGALPLKKIIAKAVADEQPAIGIADTNNLFAALEFSQK 69

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMY 120
            A   G+QPIIGCQL IDM+D  +   +        +PSIVL+ +T  GY RL++LVSR Y
Sbjct: 70   AADDGLQPIIGCQLSIDMEDEAEGERRSHAQQLAKLPSIVLIAATDAGYTRLVDLVSRAY 129

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            L  +G Q+VR+  SWL   GTEGLI LTG  SGP+D A     + +AE RL T  +LFGD
Sbjct: 130  LEGEGHQAVRVTRSWLAAGGTEGLIALTGAGSGPVDLALKAGLAALAEARLKTLVELFGD 189

Query: 181  RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            RLYV LQRH  YDR +E+++V LAY H++PLVATN + F S  DY+AHD LMAVAH+ VV
Sbjct: 190  RLYVELQRHGSYDRRQENRLVDLAYRHDIPLVATNEAFFPSPADYDAHDALMAVAHNAVV 249

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            S   R R+T DHYLK+R EM ++F+DLPEALENTVEIARRCSF+L+   PILPRF     
Sbjct: 250  SDDRRFRLTSDHYLKSRKEMAALFADLPEALENTVEIARRCSFMLKTRGPILPRFTGASD 309

Query: 301  DDIQKE--EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            D ++ E  E  ELR +A  GLE RL++  +A GY  +DYR+RL FEL VI RMKF GYFL
Sbjct: 310  DPVEAERAESAELRRQAEEGLEQRLSRLGMAPGYKEEDYRERLAFELGVIERMKFPGYFL 369

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVADFI+WAK+++IPVGPGRGSGAGS+ AYALTITD+DP+RFSLLFERFLNP+R+SMPDF
Sbjct: 370  IVADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDF 429

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFCQDRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL
Sbjct: 430  DIDFCQDRREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKL 489

Query: 479  IPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +PN+PA+P    +AI ++ R +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDR
Sbjct: 490  VPNNPANPTPLSKAIEEEPRLQEEAEKEPVVGRLLDIAQKIEGLYRHASTHAAGIVIGDR 549

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            PLSQLVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VD
Sbjct: 550  PLSQLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFVAKRGIAVD 609

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ IP DD +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++N
Sbjct: 610  LASIPLDDPKTYEILSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMEN 669

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I VYN RK+G+E+I SIHP ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAM
Sbjct: 670  IPVYNARKHGEEEIESIHPKIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAM 729

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKKIKEEMDKQ+ RF+ GA  NG+ K  A  IF+LLAKFA+YGFNKSHAAAYA++SYQTA
Sbjct: 730  GKKIKEEMDKQRARFVEGAVGNGVVKPQADLIFDLLAKFANYGFNKSHAAAYAIVSYQTA 789

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            +MK HYPVEFLAASMTL+M N EKI  F QDA +  IQ++ PSV T    F+ GDNRIYY
Sbjct: 790  YMKAHYPVEFLAASMTLDMSNTEKINDFRQDAIRLGIQVIAPSVQTSFRLFETGDNRIYY 849

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            SLAAIKGVG +   HI+    D+PF SLEDFC R+D K LNRRV ESL+ AGA DCFGY 
Sbjct: 850  SLAAIKGVGESAVEHIVAVRGDRPFASLEDFCLRIDPKLLNRRVFESLIAAGAFDCFGYD 909

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R +L+  LD I  +AQ  ++N+ +   ++F     T  +KI L  ++   +S +   E +
Sbjct: 910  RAELIGGLDRILGFAQRAQENKLSGQSDMFGAGAATGPEKIALPVYTPWLASEKLHREFQ 969

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRI 1015
            VLGFY S HPLD Y  +L KM ++ + +   A  +G +  RLA  V SKQ++KTR G+++
Sbjct: 970  VLGFYLSAHPLDTYNKLLAKMRVQTFADFSAAVKKGASAGRLAGTVTSKQERKTRTGNKM 1029

Query: 1016 GWVTFSEPAKEYEANFF 1032
            G V FS+ + ++EA  F
Sbjct: 1030 GIVAFSDASGQFEAVLF 1046


>gi|260439212|ref|ZP_05793028.1| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876]
 gi|292808227|gb|EFF67432.1| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876]
          Length = 1155

 Score =  814 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1047 (37%), Positives = 590/1047 (56%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +  I  +       ++AITD   ++  ++F + A   GI+P
Sbjct: 2    SFTHLHVHTEYSLLDGSGKIEEITARAKELGMDSLAITDHGVMYGVIDFYRAARNVGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +      +              ++LL     GY  L+++VS+ + +D      
Sbjct: 62   ILGCEVYVAPGSRFEKEP--GISDDRYYHLILLAENNTGYANLMKIVSKGF-VDGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L+E  +EG+I L+   +G + +    N  + A K  L ++ +FG    ++ LQ 
Sbjct: 119  RVDYEVLEEY-SEGIICLSACLAGEVQKLLARNLYEEACKAALKYEAIFGKGNYFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +      +V+++    + LVATN+  +  E+D EAHD+L+ +     V+ +DR R
Sbjct: 178  HGIPTQKLVNRLLVRMSRELNIELVATNDVHYTYEDDAEAHDILLCIQTGKKVNDEDRMR 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +YLK+  EM  +FS  P+AL+NT +IA+RC+  ++     LP++   E       
Sbjct: 238  YEGGQYYLKSEEEMRELFSYAPQALDNTHKIAKRCNVEIEFGVTKLPKYDVPEGF----T 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+ L +  + GL           G  A +  +RLD+EL+VI +M +  YFLIV DFI +
Sbjct: 294  SESYLEHLCMEGLVK-------RYGERAAELEERLDYELSVIKKMGYVDYFLIVWDFINY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N I VGPGRGS AGS+ AY L ITDIDP++++L+FERFLNP+R+SMPD DIDFC +R
Sbjct: 347  AKSNGIAVGPGRGSAAGSIVAYCLEITDIDPIKYNLIFERFLNPERVSMPDIDIDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG+L AK  ++DVGR L MPYS  D L K+IPN+    
Sbjct: 407  RPEVIDYVMKKYGKDRVVQIVTFGTLAAKGVIKDVGRVLDMPYSVTDSLSKMIPNEIGMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  ++ FR     +P V  L++I ++LEGL RH S HAAG+VIG RPL + VP+ 
Sbjct: 467  LD-KALNANNEFRTRYETEPEVKYLIDICKRLEGLPRHTSMHAAGVVIGSRPLDEFVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            R        TQF M  IE+ GL+K DFLGL+TLT++Q +   + +R  V  D+S I ++D
Sbjct: 526  RAS-DGTITTQFTMTTIEELGLLKMDFLGLRTLTVIQDAERLINKRGDVSFDISKIDYND 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                 ++    T G+FQLES+GM+  ++ ++PD IED+IA +SLYRPGP+D I  Y   K
Sbjct: 585  RNVLEMIGQGKTEGVFQLESTGMKNFMKELKPDGIEDLIAGISLYRPGPMDFIPQYIAGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N K  I      ++P+LKET G I+YQEQVMQI + L+GY+L  +D++RRAM KK +  M
Sbjct: 645  NDKTSITYACKELEPILKETYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKKQAVM 704

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +K++  FI         G    GI +++A +I++ +  FA Y FNKSHAA YA ++++TA
Sbjct: 705  EKERHNFIYGNEEENVAGCIAKGIDESVASHIYDTMMDFAKYAFNKSHAACYAFVAFRTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIY 836
            ++K +YPVEF+AA MT  +DN  K+ ++    R   I+I+PP +N     F    D+ I 
Sbjct: 765  YLKYYYPVEFMAALMTSVLDNTTKVAQYIVTCRNMGIEILPPDINEGEGTFTAASDSSIR 824

Query: 837  YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y L+AIK +G      I+E  A+   F  ++DF SR+  K++N+R +ES + +GA D FG
Sbjct: 825  YGLSAIKSLGRPVIEAIVEERANGGRFKDIKDFISRLSGKEVNKRTVESFIKSGAFDSFG 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFEN 954
             +R Q++    +I        K   +   ++F         D+IT+        S     
Sbjct: 885  LTRKQMMLVYGDIMDKVSSERKTEISGQMSLFDMFAPDEKPDEITIPDVGEYTKSELLAM 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------TIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPLD Y+ +L K       + +               + +  M+     
Sbjct: 945  EKEVLGIYASGHPLDEYEGLLNKNVTCTTADFIPDDETGMPKVNDDERVIVGGMIAECSV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K TR+G  + ++   +     E   FP
Sbjct: 1005 KNTRQGQNMAFLKLEDRVGTVEVIVFP 1031


>gi|121602736|ref|YP_989159.1| DNA polymerase III subunit alpha [Bartonella bacilliformis KC583]
 gi|120614913|gb|ABM45514.1| DNA polymerase III, alpha subunit [Bartonella bacilliformis KC583]
          Length = 1161

 Score =  814 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 593/1029 (57%), Positives = 758/1029 (73%), Gaps = 7/1029 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS+YSLLEGA+ +  I+    +D  PAIAITDTNNLF ALEFSQ   A GIQ
Sbjct: 16   PRFIHLRVHSAYSLLEGAIKIPQIVQHAVSDNAPAIAITDTNNLFGALEFSQYCFAEGIQ 75

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFP-TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGCQ+ ID  D    +   K  +P   PS+VL  ++  GY  L+ LVSR YL +    
Sbjct: 76   PIIGCQIAIDFGDKDDHSRLAKYHYPSDFPSVVLFAASKTGYACLVRLVSRAYLDEHNTN 135

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WL    +EG+I LTGGS GPI+ A   +  + A +RL+  K++FGDRLY+ LQ
Sbjct: 136  FPHIKADWLLS-QSEGIIALTGGSGGPINLALAEDKKEWAIERLMDLKRIFGDRLYIELQ 194

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RH  YDR  E++++ LAY H++PLVATN + FL+++ YEAHD LMAVA   VVS  +R R
Sbjct: 195  RHGSYDRKVEAELIDLAYVHQIPLVATNEAFFLNKKGYEAHDALMAVAEGQVVSNPNRKR 254

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD-DIQKE 306
            VTPDHYLK++ EMV++FSDLPEALEN+VEIA RC     + +PILPRF E+  D +   E
Sbjct: 255  VTPDHYLKSQDEMVTLFSDLPEALENSVEIALRCHAFTPMRSPILPRFTERSVDSNAALE 314

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E+ EL N+A  GL++RL    +A+GY   DY QRLD+E+ VI RM+FSGYFLIV+DFI+W
Sbjct: 315  EDKELINQAKDGLKIRLETIGLAEGYTLADYEQRLDYEIAVITRMQFSGYFLIVSDFIKW 374

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQDR
Sbjct: 375  AKLHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRISMPDFDIDFCQDR 434

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI YVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY QVD L KL+   P + 
Sbjct: 435  REEVIHYVQKKYGCDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLVSATPGNN 494

Query: 487  VS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            +   QAI D+ +F E    +P + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVPM
Sbjct: 495  IELAQAIKDEPKFAEEAKKEPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVPM 554

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            YRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++DF+A++GVK+DLS I  +D
Sbjct: 555  YRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVARKGVKIDLSCISLND 614

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             ETY +L    T+G+FQ+ES GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN RK
Sbjct: 615  EETYAMLARGNTVGVFQVESPGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNARK 674

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+EKI SIHP ID ++KETQGVI+YQEQVMQIAQ LSGYSL EAD+LRRAMGKKI +EM
Sbjct: 675  HGQEKITSIHPKIDHLVKETQGVIVYQEQVMQIAQELSGYSLGEADLLRRAMGKKIHKEM 734

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             KQ+ RF+SGA   GI K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK HYPV
Sbjct: 735  QKQRTRFVSGAVDRGIDKDQADMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKAHYPV 794

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EFLAASMT +M N +K+  F ++A +  IQ++ P V T    F++G+N IYYSL+AIKGV
Sbjct: 795  EFLAASMTYDMMNADKLNDFRREALRLEIQVIAPCVQTSHRIFEIGENCIYYSLSAIKGV 854

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G +   HI+    +KPF  LEDFC R+D + +N+R +ESL++AGA DCFG +R  LL SL
Sbjct: 855  GDSVVDHIVACRGNKPFKDLEDFCGRIDPRVINKRAMESLIYAGAFDCFGIAREVLLASL 914

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            + +   A  +  N ++   +IF    G     I L + +  + + +  +E +V+GFYFS 
Sbjct: 915  ETLNARAIRIFDNNSSGQTDIFGMVDGPKEPFI-LSQATPWSLAEKLHHEFQVIGFYFSA 973

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            HPLD Y+ IL K  ++ +      ++G     RLA  VV+KQ +KT+ G +IG + FS+ 
Sbjct: 974  HPLDEYQTILAKKRVQTWNNFSNAVKGGATAARLAGTVVTKQIRKTKSGKKIGIIQFSDT 1033

Query: 1024 AKEYEANFF 1032
            + +YE   F
Sbjct: 1034 SGQYETVMF 1042


>gi|190891309|ref|YP_001977851.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652]
 gi|190696588|gb|ACE90673.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652]
          Length = 1165

 Score =  814 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 642/1031 (62%), Positives = 809/1031 (78%), Gaps = 6/1031 (0%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P F+HL+VHS+YSLLEGAL L  IL K A D QPAIAITDTNNLF ALEFSQKA   G+
Sbjct: 16   TPGFIHLRVHSAYSLLEGALPLKKILYKAAGDNQPAIAITDTNNLFVALEFSQKAMDDGL 75

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            QPIIGCQ+ IDM+D L+   +G       +PSIVLL +T  GY+RL++LVSR YL     
Sbjct: 76   QPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATEAGYERLVDLVSRAYLGGDSN 135

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q++ I  SWL+E GTEGLI LTG  +GP+D A     +  AE RLL  K+LFGDRLYV L
Sbjct: 136  QAIHIRASWLEEAGTEGLIALTGALTGPVDAAIREGHTAQAEARLLMLKRLFGDRLYVEL 195

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            QRH  YD+  E ++V LAY H+LPLVATN + F + +DY+AHD LMAVAH+ +VS   R 
Sbjct: 196  QRHGTYDKPHEQKIVGLAYAHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQ 304
            R+TPDHYLK+R+EM  +F+DLPEALENT+EIARRCSF+L+   PILPRF     + ++ +
Sbjct: 256  RLTPDHYLKSRAEMAKLFADLPEALENTIEIARRCSFVLKTRKPILPRFTGATDDAEEAE 315

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            + E  ELR +AV GL+ RL+   ++ GY  +DYR+RL+FEL+VI RM+F GYFLIVADFI
Sbjct: 316  RAEAGELRRQAVEGLDRRLSTLGMSPGYEEKDYRERLEFELSVIERMRFPGYFLIVADFI 375

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 376  KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA
Sbjct: 436  DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495

Query: 485  HPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +P    +AI ++ + +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV
Sbjct: 496  NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VDL+ IP 
Sbjct: 556  PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKRGISVDLAAIPL 615

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN 
Sbjct: 616  DDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNA 675

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G E++ SIHP+ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK 
Sbjct: 676  RKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMD+Q+ERF+ GA KNG+SK  A NIFELLAKFA+YGFNKSHAAAYA++SYQTA+MK HY
Sbjct: 736  EMDQQRERFVDGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASMTL+M N EK+  F QDA++  I+++ PSV T    F+ GDNRIYY+LAA+K
Sbjct: 796  PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRQFETGDNRIYYALAALK 855

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG +   HI+E   D PF  +EDFC R+D +++NRRVLESL++AGA DCFG  R QL  
Sbjct: 856  GVGESAVDHIVEVRGDTPFAGIEDFCLRIDPRQVNRRVLESLIYAGAFDCFGTDRAQLSA 915

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             LD I  YAQ  ++N+ +   +IF     +  +KI L  FS   +S R   E +VLGFY 
Sbjct: 916  GLDRILGYAQRAQENKLSGQSDIFGSTLTSGPEKIALPPFSPWLASERLLKEFQVLGFYL 975

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            + HPLD Y  IL+KM ++ + E  A I+   +N RLA  V+SKQ++KTR G+++G + FS
Sbjct: 976  TAHPLDSYNNILQKMRVQTFAEFSAAIKQGASNARLAGTVISKQERKTRTGNKMGIIVFS 1035

Query: 1022 EPAKEYEANFF 1032
            + + ++EA  F
Sbjct: 1036 DSSGQFEAVLF 1046


>gi|222529253|ref|YP_002573135.1| DNA polymerase III DnaE [Caldicellulosiruptor bescii DSM 6725]
 gi|222456100|gb|ACM60362.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor bescii DSM
            6725]
          Length = 1139

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1033 (37%), Positives = 601/1033 (58%), Gaps = 30/1033 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA  ++ + +++      A+ ITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHLHTEYSLLDGACRIDRLFERVKDLNMNAVGITDHGAMYGVIDFYKTAKENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +               +  +VLL    +GY+ L ++VS  + ++      
Sbjct: 62   IIGCEVYLAPRTRFDKEP---NIDNDIHHLVLLAMDNDGYRNLSKIVSIGF-VEGFYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L +  ++GLI LT   +G I +       +     +  +K++FG+  Y  LQ H
Sbjct: 118  RVDREVLSKY-SKGLIALTSCLAGEIPKLILREQKEKLYDAINFYKEVFGENFYFELQYH 176

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++    +++++L+  +++PLVATN+  +L  ED   HD+L+ +     +S  +R   
Sbjct: 177  YIDEQRFVNNELMRLSKKYQIPLVATNDVHYLRREDRNLHDILLCIQTGKTISDSNRMEF 236

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM  +F  +PEAL+NT+EIA +C+   +     LP+F   E    + + 
Sbjct: 237  PTDEFYLKSPEEMQQLFGYIPEALKNTLEIAEKCNVEFEFGKINLPKFQLPEG---KSDA 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+  A+ G + R            +    RL  EL VI  M F  YFLIV DFI +A
Sbjct: 294  FEYLKELALEGFKKRYKNDD-------KAAYDRLMMELQVIKDMGFVEYFLIVQDFINYA 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+NNI VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDFC  RR
Sbjct: 347  KQNNIMVGPGRGSAAGSIVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDIDFCYQRR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP  P   +
Sbjct: 407  QEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGVPYSQVDEIAKMIPFSPGMTI 466

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                +  +   ++    + +V R+++ ++ LEG+ RHAS HAAG+VI   P++ LVP+  
Sbjct: 467  DKA-LEINHDLKKIYEQNDTVRRIIDTARNLEGMPRHASVHAAGVVISSCPITDLVPL-- 523

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D  VTQF M  +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL  I ++D 
Sbjct: 524  ARTDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLDRIDYNDK 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y  ++   T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I VY   KN
Sbjct: 584  NVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIPVYIQNKN 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +EKI  +HP ++P+L  T G I+YQEQVMQI + L+GYSL  AD++RRAM KK  + + 
Sbjct: 644  NREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAKKKADILM 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            ++K+RFI GA  NGI K  A  IF ++  FA Y FNKSHAAAYA+++YQTA++K +Y +E
Sbjct: 704  EEKDRFIEGAMANGIDKETAEKIFAIIEDFASYAFNKSHAAAYAILAYQTAYLKKYYTIE 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+A+ +T  M++ EK+  + ++ R+F I I+PP +N    DF +  N I + L AIK +G
Sbjct: 764  FMASLITSVMNSNEKVGMYIEECRKFGISILPPDINKSSYDFTIEGNSIRFGLRAIKSLG 823

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                 HI++       F  L DF  RVD+  +N+R++E+L+ +GA D  G +R  LL S+
Sbjct: 824  ENVIAHILKEREKKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTGLNRNSLLASV 883

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            ++I   A    K +     + F    G  ++    +      +    + E+  +G Y S 
Sbjct: 884  EDIL--AIKQTKKKNANQFSFF-EISGNENESFVYKNMPQPTAQELMKMEKDTIGVYISS 940

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNN-----IRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            HPL+ Y   + K  I    E  A    +      I +  ++   + K T+    + +   
Sbjct: 941  HPLEKYTEEISKYNITPLSEISAMSEEDEYKFEQILVCGILKEVKVKLTKNNLTMAFAKL 1000

Query: 1021 SEPAKEYEANFFP 1033
             +     E  FFP
Sbjct: 1001 EDLTDSVEVLFFP 1013


>gi|158521896|ref|YP_001529766.1| DNA polymerase III, alpha subunit [Desulfococcus oleovorans Hxd3]
 gi|158510722|gb|ABW67689.1| DNA polymerase III, alpha subunit [Desulfococcus oleovorans Hxd3]
          Length = 1182

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1035 (36%), Positives = 583/1035 (56%), Gaps = 23/1035 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL VH++YSLL+G + +  ++ +       A+AITD   +F  + F ++A  AGI+
Sbjct: 8    PDFVHLHVHTAYSLLDGIIRIEALMKRAVEYGMGAVAITDHGTMFGVVSFYKEAVKAGIK 67

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            P+IGC+  +  +     T         +  +VLL  T EGY+ L  L S   L       
Sbjct: 68   PVIGCECYVAPRSITDRTPMDH---DGLSHLVLLAETMEGYRNLCHLASIASLK-GFYHK 123

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQ 187
             RI    L++ G  GLI L+    G + +     +++ A++    +++  G+   ++ +Q
Sbjct: 124  PRIDKELLKQYGN-GLIGLSACLKGEVAQRLLEGNTEAADRAARFYQEALGENSFFLEVQ 182

Query: 188  RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   ++ R  + + +++    +PLV TN+  +L  ED+  HD+ + +     +   DR 
Sbjct: 183  NNGIPEQTRLNAALREMSDRLSIPLVGTNDCHYLDREDHNIHDLSLCLQTGKTIHDADRF 242

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  T     K + EM +     P A  NTV IA RC+  L       P F         K
Sbjct: 243  RFETDQLNFKPKHEMCTFLEPFPNAATNTVAIADRCNVELDFKTLHFPVFATPPG----K 298

Query: 306  EEENELRNKAVAGLEVRLAQGAIAK-GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              +         G   RL   A     +  + Y +RL+FEL+VI  M F  YFLIVADFI
Sbjct: 299  TVDQLFEETVREGFARRLKAVARKNPDFDREAYDRRLEFELSVITDMGFPSYFLIVADFI 358

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
              AK+N IP+GPGRGS AGS+ +YA+ ITD+DP+   LLFERFLNP+R SMPD D+D C 
Sbjct: 359  AHAKENGIPIGPGRGSAAGSIVSYAMGITDLDPIEHGLLFERFLNPERKSMPDIDVDICI 418

Query: 425  DRRDEVIRYVQNKY-GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              R+ V  Y+  KY G + VAQIITFGS++++A +RDVGR + +P S VDR+ KLI   P
Sbjct: 419  IGRERVYHYLVEKYGGSDYVAQIITFGSMKSRAVIRDVGRVMGIPLSDVDRIAKLI---P 475

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             +    +A+A++   ++   + P    L+   + LEG+ RHASTHAAG+VIGD+PL++ +
Sbjct: 476  MNKSLDEALAEEPDLKKLVDSRPDFAELVAAGRALEGMPRHASTHAAGVVIGDKPLTEYL 535

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP 602
            P+Y  V+ +  +TQ++MK +E  GL+K D LGL+ LT++  +L  L Q+     D+S + 
Sbjct: 536  PLY-AVKENEALTQYDMKCVEAIGLVKLDLLGLRNLTVIADTLKILQQQGRQVPDMSHLD 594

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--V 660
              D +TY LL    T G+FQLES+GM++ L  ++P    DI ALV+LYRPGP+ + +   
Sbjct: 595  LADEKTYQLLCAGKTTGVFQLESTGMKELLLKLKPTTFADITALVALYRPGPMGSGMLVD 654

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   ++G++++  + P ++P+LKET GVI+YQEQVMQIAQ ++GY++  AD LR+AMGKK
Sbjct: 655  FVECRHGRKRVEYLIPELEPILKETYGVIVYQEQVMQIAQAVAGYTMGTADDLRKAMGKK 714

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I  +M + +  FI GA   GI K  A  ++E +  F +YGFNKSH+AAYA++++QTA++K
Sbjct: 715  IAAKMAEHQATFIEGALARGIDKAKAETLYEQIKFFGEYGFNKSHSAAYALVAFQTAYLK 774

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             H+PVE +AA +T   +    + KF  + R  +I+++PP +N   V F V  +R+ + L 
Sbjct: 775  AHFPVELMAALLTSSTNKTIDVVKFIAECRALDIEVLPPDINESEVAFSVVGDRLRFGLL 834

Query: 841  AIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            A+K VG      I+ E  A+  F S+ D C RV   K+N++VLESLV  GALD  G  R 
Sbjct: 835  AVKNVGEGAIEAIVEERRANGRFVSIFDLCERVPLTKVNKKVLESLVKCGALDSTGAGRA 894

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFSVENSSVRFENEQRV 958
            Q+   L++   + Q V++ + +   ++F       + +  TL      +   R   E+ V
Sbjct: 895  QMTAVLEDALAHGQTVQREKNDSQMSLFDMPGADAALNAPTLPDMPEWSDRQRLAFEKEV 954

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LGFY SGHPL  Y+ +LRK               +N+ +   +    +K T++G ++  V
Sbjct: 955  LGFYVSGHPLAAYRDVLRKYANTDALTLKEIADQSNVIIGGGITVVNRKTTKRGDQMAIV 1014

Query: 1019 TFSEPAKEYEANFFP 1033
            T  +     E   FP
Sbjct: 1015 TIEDMYGTVEVVVFP 1029


>gi|114567554|ref|YP_754708.1| DNA polymerase III DnaE [Syntrophomonas wolfei subsp. wolfei str.
            Goettingen]
 gi|114338489|gb|ABI69337.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei str.
            Goettingen]
          Length = 1130

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/1030 (38%), Positives = 618/1030 (60%), Gaps = 25/1030 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  HS YSLL+GA  + +++++    + PA+AITD   L+  ++F ++A   GI+P
Sbjct: 4    SFVHLHNHSEYSLLDGACRIKDLVNRAVELEMPAVAITDHGVLYGVIDFYREARKRGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC+L +  +  L    +       +  + LL     GY+ L++LVSR +L +      
Sbjct: 64   LIGCELYVAPRSRLDKEAR---IDDNLYHLTLLCKNELGYRNLVQLVSRAFL-EGFYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L++   EGLI L+G   G I R       + A ++ L +++LFG    Y+ LQ 
Sbjct: 120  RVDQELLEKYH-EGLIALSGCVVGEIPRLLQNGDYRGAREKALYYQELFGSGNFYLELQD 178

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +       +++L+    +PL A+N+  +L ++D + HDVL+ +   +VV+ + R R
Sbjct: 179  HGLQEEKASLPGLLRLSREDSIPLAASNDCHYLRKKDAQVHDVLLCIQTGSVVNDEKRLR 238

Query: 248  VTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +   +    R EM ++F D PEALENT++IA  C+         LP F           
Sbjct: 239  FSGSEFYMKSREEMAALFPDYPEALENTLKIAGECNLDFTFGEYHLPVFELPPG----HS 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+ L          +            +   +RL++EL VI  M F+ YFLIV D + W
Sbjct: 295  AESFLSEMVHEKFRRKYPD-------AQEKIIERLEYELRVINEMGFAAYFLIVQDLVNW 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++N IPVGPGRGS AGS+ +Y L IT IDPLR+ LLFERFLNP+R+SMPD DIDFC ++
Sbjct: 348  SRQNGIPVGPGRGSAAGSLVSYVLDITTIDPLRYDLLFERFLNPERVSMPDIDIDFCFEK 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD VI Y+ +KYG +RVAQIITFG++ A+AA+RDVGRAL +PY QVDR+ K++P +    
Sbjct: 408  RDRVIDYIISKYGADRVAQIITFGTMAARAAIRDVGRALDVPYGQVDRIAKMVPAELGVS 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +    +        A  +D +   +L+I+Q +EG+ RHAS HAAG+VIG + LS+++P+ 
Sbjct: 468  LERA-LEISPDLFTAYQSDYNTRNILDIAQAIEGMPRHASIHAAGVVIGRQSLSEILPLQ 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            +       +TQF  + +E  GL+K D LGL+TLT++ ++L+ + + R   +D+S IP DD
Sbjct: 527  KTP-EGHVLTQFTKETVEDIGLLKMDILGLRTLTVIDRALEIIRKTRDEDIDISSIPLDD 585

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
               Y LL+   T G+FQLES G+R+ L  M+PD  EDIIA+++LYRPGP+ + +   + N
Sbjct: 586  EAVYKLLSAGDTAGVFQLESDGLRRLLCEMKPDRFEDIIAVIALYRPGPLGSGMVEDFIN 645

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RKNG+++I  I PL++ +LKET GVI+YQEQVM++A  L+ +++ EADVLRRAMGKK  E
Sbjct: 646  RKNGRQEIEYIDPLLEDILKETYGVILYQEQVMRVASELADFTMGEADVLRRAMGKKKAE 705

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            E+  Q+++FI+GA++NGI    A ++F+L+  FA YGFNKSH+AAYA+ISYQTA++K HY
Sbjct: 706  ELMAQRDKFIAGAARNGIGLATASHLFDLMESFAGYGFNKSHSAAYALISYQTAYLKAHY 765

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVE+L A ++  +DN +K+  + ++ R+  I+++PP +N    +F V  + I + L AIK
Sbjct: 766  PVEYLCAFLSSVIDNQDKVVSYIKECRRLGIKVLPPDINESYENFSVARDAIRFGLGAIK 825

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
             VG    ++I+EA     + SL DFC RVD  +LN+R+LE+L+ AG  D  G+SR   L 
Sbjct: 826  NVGQNAVKNIVEARKQGFYTSLFDFCRRVDLGQLNKRMLENLILAGCFDSLGFSRKGALS 885

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             ++     +  +++N  ++  ++F  E     + I ++      S  R   E+ VLGF+ 
Sbjct: 886  IMEECVNISLAIKQNECSQQGSLFGDEMEMVEEPI-IKLKGEYESRERLLKEKEVLGFFV 944

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S  PLD ++ +L  +     E+       + +R+A +VV+  ++ +RKG         + 
Sbjct: 945  SESPLDEFRSLLPLISTHCLEDINLWEEESYVRVAGIVVNLSRRVSRKGESYARFVLEDL 1004

Query: 1024 AKEYEANFFP 1033
                E   FP
Sbjct: 1005 GGRIEVLVFP 1014


>gi|304436411|ref|ZP_07396386.1| DNA-directed DNA polymerase III alpha subunit [Selenomonas sp. oral
            taxon 149 str. 67H29BP]
 gi|304370575|gb|EFM24225.1| DNA-directed DNA polymerase III alpha subunit [Selenomonas sp. oral
            taxon 149 str. 67H29BP]
          Length = 1142

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1034 (36%), Positives = 600/1034 (58%), Gaps = 30/1034 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+GA  + +++ +       A+A+TD   ++ A+ F ++A A GI P
Sbjct: 14   AFAHLHVHTEYSLLDGASRIKDLVRRTKELGMDAVAMTDHGVMYGAVAFYKEAKAQGIHP 73

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +   +      T       ++LL     GY+ L++L+S   + +      
Sbjct: 74   IIGCEVYLAPRQRQERAEVNGTR---YYHLILLAENECGYRNLVQLISLANI-EGYYYKP 129

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            RI    L     +GLI L+   +G I +A      ++A++ +  ++ +FG D  ++ +Q 
Sbjct: 130  RIDKELLHRFH-DGLIALSACVAGEIPQAILRGDMELADQLVREYRDIFGKDNFFLEVQN 188

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +       +  LA  +++ L ATN+  ++  ED E HD+L+ V     ++  DR R
Sbjct: 189  HGLPEEMTVNRALRDLAKKYDIGLTATNDVHYVHAEDSEFHDILLCVQTGRTLNDPDRMR 248

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + PD+YLK+  EM  +F+D P A+ENT +IA RC          LP +      D    
Sbjct: 249  FSGPDYYLKSEEEMSDLFTDYPGAIENTAKIAARCQVDFTFGELQLPYYPLP---DGYTT 305

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            ++  LR   +  L  R             + RQRLD+EL VI +M ++ YFLIV DFI +
Sbjct: 306  DDAYLRALCIERLPARYP-------TARDEVRQRLDYELGVIHKMGYASYFLIVWDFINY 358

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ + + VGPGRGS AGS+ AY L IT+IDPL+++LLFERFLNP+R+SMPD DIDF    
Sbjct: 359  ARGHGVAVGPGRGSAAGSIVAYLLGITNIDPLQYALLFERFLNPERVSMPDIDIDFDDIN 418

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R  VI YV+ +YG + VAQI TFG++ AK A+RDV R L+MP+ +V  + KL+P +    
Sbjct: 419  RGRVISYVKERYGEDHVAQIATFGTMGAKGAIRDVARVLEMPFGEVSTITKLVPAELNIT 478

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ + + FR+    D    R++++++K+EGL R+ S HAAG+VI   PL++ VP++
Sbjct: 479  LD-RALEESADFRKRYEEDEKTHRVIDLARKIEGLPRNTSIHAAGVVIAKSPLTRQVPVW 537

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
              V     VT+++   +E  GL+K DFLGL+TLT++  ++  + Q  G+++D+  IP  D
Sbjct: 538  --VSDGTLVTEYDKDDVEALGLLKMDFLGLRTLTIIDDAVKNIRQSHGIELDVDKIPLVD 595

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
             +T  +L    T  +FQ+ES+GM   ++ +QP    D+I  V+LYRPGP+ + +   + +
Sbjct: 596  EKTSRMLCAGDTGAVFQMESTGMTNLVKDLQPKGFVDLIPTVALYRPGPLGSGMVTDFID 655

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
              +GK+++V +HPL++P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK  E
Sbjct: 656  GLHGKKEVVYLHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGKKKHE 715

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  QKE F+ G  KNGI   +A +IF+LL  FADYGFNKSH+AAY ++++QTA++K HY
Sbjct: 716  LLMAQKEIFLQGCEKNGIEAALANHIFDLLTHFADYGFNKSHSAAYGLLAWQTAYLKAHY 775

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF+A  +T  MD  +KI  + Q   Q NI+I+PP +N     F +    I + LAA++
Sbjct: 776  PVEFMAGVLTSIMDKTDKIPVYIQLCHQMNIKILPPDINASTAGFSIESGAIRFGLAAVR 835

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG T    + +   A+  F SL DFC+R+D + LN+R +ESL+  GA D  G  R QLL
Sbjct: 836  NVGETAIESMEQVRSANGSFRSLIDFCARIDVRILNKRAIESLIKCGAFDSLGTERNQLL 895

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSSVRFENEQRVLGF 961
             SLD+  + A   +++R +    +F  +      ++    +        R   E+   GF
Sbjct: 896  SSLDSAMQDAARTQRDRISGQMGLFGQDTMESIHQVQNAVEVPPSTPRERLMWEKEATGF 955

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y +GHPLD Y+  L    +    + +         +R+  ++ + ++  T+KG  + +  
Sbjct: 956  YITGHPLDDYRDTLS--CLLPISDILTGLCKDRQLVRIGGILTNTKRYTTKKGDTMLFAE 1013

Query: 1020 FSEPAKEYEANFFP 1033
              + +   E   FP
Sbjct: 1014 MEDYSGHIELTVFP 1027


>gi|255281425|ref|ZP_05345980.1| DNA polymerase III, alpha subunit [Bryantella formatexigens DSM
            14469]
 gi|255267913|gb|EET61118.1| DNA polymerase III, alpha subunit [Bryantella formatexigens DSM
            14469]
          Length = 1150

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1046 (35%), Positives = 580/1046 (55%), Gaps = 39/1046 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F + A A GI+PI
Sbjct: 3    FTHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGAMYGVIDFYRAARAEGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +         N G         +VLL     GY  LI++VS  + ++      R
Sbjct: 63   LGCEVYVAPNSRFDRENTGGE--DRYYHLVLLAENNTGYANLIKIVSAGF-VEGYYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +    L++   EG+I L+   +G I R       +  +K  L ++++FG    ++ LQ H
Sbjct: 120  VDKELLRQYH-EGIIALSACLAGEIPRYLVRGLYEEGKKVALEYQEIFGKGNFFLELQDH 178

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     Q+++++    + LVATN+  +    D E HD+L+ +     +  +DR R 
Sbjct: 179  GIANQQIVNQQLLRMSAETGIELVATNDVHYTLASDAEPHDILLCIQTGKKLQDEDRMRY 238

Query: 249  T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                +Y+K+  EM  +F    +ALENT +IA RC+  ++     LPRF   E        
Sbjct: 239  EGGQYYVKSPEEMAQLFPYALQALENTQKIADRCNVEIEFGVTKLPRFDVPEG----YTS 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L      GL +R           A++ ++RL++EL +I +M +  YFLIV DFI++A
Sbjct: 295  WEYLNKLCFDGLALRYPP------EQAEELKERLNYELGIIQKMGYVDYFLIVWDFIRYA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            + ++I VGPGRGS AGS+ +Y L IT +DP++++LLFERFLNP+R+SMPD DIDFC +RR
Sbjct: 349  RDHDISVGPGRGSAAGSLVSYTLGITKLDPIKYNLLFERFLNPERVSMPDIDIDFCFERR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RV QI+TFG+L A+  +RDVGR + +PYS VD + K++P +    +
Sbjct: 409  QEVIDYVVRKYGKDRVVQIVTFGTLAARGVIRDVGRVMDIPYSVVDSVAKMVPQELNITL 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+ ++S  R+    DP + RL++++++LEGL RH S HAAG+VI  +   + VP+ R
Sbjct: 469  D-KALQENSELRKIYEEDPQMHRLIDMAKRLEGLPRHTSMHAAGVVICQKAADEYVPLSR 527

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDH 606
                    TQF M  +E+ GL+K DFLGL+TLT++Q ++       GV +D+  I +DD 
Sbjct: 528  GS-DGSITTQFTMTTLEELGLLKMDFLGLRTLTVIQDAVKLVQKDTGVLLDMDKIDYDDK 586

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
               + L T  T G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y   KN
Sbjct: 587  AVLNSLGTGKTDGVFQLESAGMQNFMKELKPQSLEDLIAGISLYRPGPMDFIPQYIRGKN 646

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E I    P + P+L+ T G I+YQEQVMQI + L GY+L  +D+LRRAM KK    M+
Sbjct: 647  HPETITYDCPQLKPILEPTYGCIVYQEQVMQIVRDLGGYTLGRSDLLRRAMSKKKASVME 706

Query: 727  KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K++  F+         G  KNGIS+ +A  I++ +  FA Y FNKSHAAAYAV+SYQTAW
Sbjct: 707  KERRNFVYGNEEEGVPGCIKNGISEQVANKIYDDMIDFAKYAFNKSHAAAYAVVSYQTAW 766

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YP+EF+A+ MT  +DN  K+  +    R+  I+I+PP VN     F V + +I Y 
Sbjct: 767  LKYYYPLEFMASLMTSVIDNPPKVAAYHMTCRKMGIEILPPDVNCGEGGFSVENGKIRYG 826

Query: 839  LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L+AIK +G      ++E    +  + SL++   R+  K +N+R LES + +GALD  G +
Sbjct: 827  LSAIKSIGRPVIAALVEEREKNGRYTSLKNLVERMSGKDINKRTLESFIKSGALDSLGAT 886

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENE 955
            R Q++     +        K       ++F    E+     +I++              E
Sbjct: 887  RRQMMTVYSQVCDAVNQERKTSLAGQMSLFDFVGEEEKKHYEISMPDVGEYEKEQLLAYE 946

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--------RGNNIRLAAMVVSKQQK 1007
            + VLGFY SGHPL+ Y+ + RK       +               + + +  M+ +K  K
Sbjct: 947  KEVLGFYVSGHPLEAYEELWRKRITNVTTDFQPDEETGIPLVQDQSRVTVGGMITAKTIK 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T+    + ++T  +     E   FP
Sbjct: 1007 YTKTNKTMAFLTLEDLLGTVEVVVFP 1032


>gi|120553848|ref|YP_958199.1| DNA polymerase III subunit alpha [Marinobacter aquaeolei VT8]
 gi|120323697|gb|ABM18012.1| DNA polymerase III, alpha subunit [Marinobacter aquaeolei VT8]
          Length = 1162

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1051 (39%), Positives = 617/1051 (58%), Gaps = 41/1051 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  + +FVHL+VHS YS+++G + +  ++ ++A    PA+ +T+ +N+ S + F + A  
Sbjct: 1    MTMANTFVHLRVHSEYSMVDGLVRVKPLIGRVAELGMPAVGLTEQSNMCSLVRFYKAAMG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG  + ++  D  +              + LL    +GY  L E++S  Y   Q
Sbjct: 61   AGVKPIIGADIWLENPDEPE----------NPFRLTLLARDNDGYLNLTEVISLGYTEGQ 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  +  SWL E   +GLI+L+G   G + +A      ++A +R   ++ L+ D  Y+
Sbjct: 111  RYGKPIVQKSWL-ESRAKGLIVLSGAKMGDVGKALLAGKPELARERADYWRNLYPDSYYL 169

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR     D       V+LA    LP+VATN+  FL  +D+EAH+  + +  S  +   
Sbjct: 170  ELQRTGRAGDEDCLHMSVELAAELGLPVVATNDVHFLEADDFEAHEARVCIGESRTLDDP 229

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R +   YL++  EM+ +FSD+PEA+ENTVEIARRCS  +++    LP +   +   
Sbjct: 230  RRDRRFSDQQYLRSAEEMIELFSDIPEAVENTVEIARRCSVKVRMGEYFLPNYPIPDGM- 288

Query: 303  IQKEEENELRNKAVAGLE----VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                 +   R+ +  GLE      L++         ++Y +RL FEL++I +M F GYFL
Sbjct: 289  ---TMDEYFRHVSEEGLEARLAKTLSKDDPEYDQKREEYYKRLKFELDIIIQMGFPGYFL 345

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDF
Sbjct: 346  IVMDFIKWAKNNGVPVGPGRGSGAGSLVAYALLITDLDPLEYDLLFERFLNPERVSMPDF 405

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC + RD VI Y   KYG E V+QIITFG++ AKA +RDV R     Y   D+L KL
Sbjct: 406  DVDFCMEGRDRVIDYTAQKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKL 465

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP +    +  +AI  + + +E    D     + E++ KLEG+ R+A  HA G+VI    
Sbjct: 466  IPFEVGMTL-NKAIEQEPQLKEFLEQDEEAQEIWEMALKLEGVCRNAGKHAGGVVIAPTK 524

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-- 596
            ++   P+Y D      VTQF+   +E AGL+KFDFLGL+TLT+++ +L+ +  R  +   
Sbjct: 525  ITDFSPLYCDDEGGSLVTQFDKGDVEDAGLVKFDFLGLRTLTIIKWALNMINPRRQQRGE 584

Query: 597  ---DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
               D+S IP DD  ++ +L    T  +FQLES GM+  +  +QPD +ED+IALV+L+RPG
Sbjct: 585  GELDISAIPLDDKPSFDMLKKAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPG 644

Query: 654  PIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +   + +RK+G++ +   HP      + P+L+ T GVI+YQEQVMQIAQ+++GY+
Sbjct: 645  PLQSGMVDDFIDRKHGRQPLSYPHPDYQYQGLKPVLEPTYGVILYQEQVMQIAQVMAGYT 704

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQK  F+ G   NGI KT+A NIF+L+ KFA YGFNKSH+
Sbjct: 705  LGGADMLRRAMGKKKPEEMAKQKAIFLDGCENNGIDKTLAENIFDLVEKFAGYGFNKSHS 764

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+K HYP EF+AA +T +M N +K+    ++ R   + ++ P V+    
Sbjct: 765  AAYALVSYQTLWLKAHYPAEFMAAVLTADMQNTDKVVTLVEECRNMKLDLLVPDVSRSAY 824

Query: 827  DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
             F V D  +I Y L AIKG+G      I+EA+   PF  + DFC RVD KK+N+R +E+L
Sbjct: 825  TFTVNDQGQIVYGLGAIKGLGEGPIESIVEAAKAGPFQDIFDFCRRVDLKKVNKRAMEAL 884

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFS 944
            + +GA+D  G  R +L+ S+D   + A    +N      ++F    +G   D+ T    +
Sbjct: 885  IRSGAMDKLGADRAKLMASIDKAIQQADQQSRNDAAGMVDMFGEMLEGGGDDEDTYADVA 944

Query: 945  ---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                     R + E+  LG Y +GHP D Y+  +R+       +       +  R+A +V
Sbjct: 945  HVREWPEKERLKGEKDTLGLYLTGHPFDEYEREVRRFVRCSIADLK--PNKSPQRVAGLV 1002

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V+++  KT+ GS + ++T  + +   EA  F
Sbjct: 1003 VAQRTMKTKTGSTMCFITLDDRSARIEATLF 1033


>gi|116251489|ref|YP_767327.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv. viciae
            3841]
 gi|115256137|emb|CAK07218.1| putative DNA polymerase III alpha subunit [Rhizobium leguminosarum
            bv. viciae 3841]
          Length = 1165

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 641/1031 (62%), Positives = 811/1031 (78%), Gaps = 6/1031 (0%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P F+HL+VHS+YSLLEGAL L  IL K   D QPAIAITDTNNLF ALEFSQKA   G+
Sbjct: 16   TPGFIHLRVHSAYSLLEGALPLKKILYKATGDSQPAIAITDTNNLFVALEFSQKAMEDGL 75

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            QPIIGCQ+ IDM+D L+   +G       +PSIVLL +T  GY+RL++LVSR YL  +  
Sbjct: 76   QPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATDAGYERLVDLVSRAYLGGESN 135

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q+V I  SWL+E GTEGLI L+G  +GP+D A        AE RLLT K+LFGDRLYV L
Sbjct: 136  QAVHISASWLEEAGTEGLIALSGALTGPVDVAIKEGHPTQAEARLLTLKRLFGDRLYVEL 195

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            QRH  YD+  E +++ LAY H+LPLVATN + F + +DY+AHD LMAVAH+ +VS   R 
Sbjct: 196  QRHGTYDKRHEQKIIGLAYAHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQ 304
            R+TPDHYLK+R+EMV +F+DLPEALENT+EIA RCSF+L+   PILPRF     + ++ +
Sbjct: 256  RLTPDHYLKSRAEMVKLFADLPEALENTIEIATRCSFVLKTRKPILPRFTGATDDAEEAE 315

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            + E +ELR +AV GL++RL+   ++ GY  +DYR+RLDFEL+VI RM+F GYFLIVADFI
Sbjct: 316  RAEASELRRQAVEGLDMRLSTLGMSPGYEEKDYRERLDFELSVIERMRFPGYFLIVADFI 375

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 376  KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA
Sbjct: 436  DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495

Query: 485  HPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +P    +AI ++ + +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV
Sbjct: 496  NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+ G+K+DL+ IP 
Sbjct: 556  PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKLGIKIDLAAIPL 615

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN 
Sbjct: 616  DDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNA 675

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G E++ SIHP+ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK 
Sbjct: 676  RKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMD+Q+ERF+ GA KNG+SK  A NIFELLAKFA+YGFNKSHAAAYA++SYQTA+MK HY
Sbjct: 736  EMDQQRERFVVGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASMTL+M N EK+  F QDA++  I+++ PSV T    F+ GDNRIYY+LAA+K
Sbjct: 796  PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRHFETGDNRIYYALAALK 855

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG +   HI+E   DKPF S+EDFC R+D +++NRRVLESL++AGA DCF   R QL  
Sbjct: 856  GVGESAVDHIVEVRGDKPFASIEDFCLRIDPRQVNRRVLESLIYAGAFDCFDMDRAQLAA 915

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             LD +  YAQ  ++N+ +   +IF     +  +KI+L  FS    S R   E +VLGFY 
Sbjct: 916  GLDRVLGYAQRAQENKLSGQSDIFGSTLTSGPEKISLPPFSPWLPSERLLKEFQVLGFYL 975

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            + HPLD Y  IL+KM ++ + E  A I+    N RLA  V+SKQ++KTR G+++G + FS
Sbjct: 976  TAHPLDSYNNILQKMRVQTFAEFSAAIKQGAANARLAGTVISKQERKTRTGNKMGIIVFS 1035

Query: 1022 EPAKEYEANFF 1032
            + + ++EA  F
Sbjct: 1036 DSSGQFEAVLF 1046


>gi|303241705|ref|ZP_07328202.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2]
 gi|302590706|gb|EFL60457.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2]
          Length = 1169

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1067 (35%), Positives = 605/1067 (56%), Gaps = 63/1067 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA  + +++ +       +IAITD   ++  ++F ++A   GI+PI
Sbjct: 4    FVHLHVHTEYSLLDGANRIKDLIKRTKELGMDSIAITDHGVMYGVVDFYKEAVNNGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++    +          +       +VLL     GY+ L+++VS  +  +      R
Sbjct: 64   LGCEVYTAKRTRHDKQGVLDSDPG---HLVLLAKDNRGYKNLMKIVSIGFT-EGFYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            I    L+   +EGLI L+   SG + +A   N  + A+K    +  +FG    Y+ LQ +
Sbjct: 120  IDFEVLERY-SEGLIALSACLSGDVPKALMNNDFERAKKVSQRYNDIFGKGNFYLELQSN 178

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++    SQ+V+L+    +PLVATN++ +L +ED  AH+VL+ +     ++ +DR R 
Sbjct: 179  GIEEQKLVNSQLVKLSKETGIPLVATNDAHYLRKEDARAHEVLLCIQTGKNMNDEDRMRF 238

Query: 249  T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +  D Y+K+  EM  +F ++PEA++NTV+I   C+  L+     LP+F   +     K+ 
Sbjct: 239  STEDFYVKSPEEMADVFVNVPEAIQNTVKIGEMCNVELEFGKLHLPKFSIPD----NKDA 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+     GL     +         +D  +RL++EL+VI +M +  YFLIV DFI++A
Sbjct: 295  FKYLKELCYEGLNRLFGECI-------EDKLERLEYELSVIKQMGYVDYFLIVGDFIKYA 347

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N IPVGPGRGS AGS+ AY L IT+IDPL+++LLFERFLNP+R++MPD DIDFC +RR
Sbjct: 348  KDNGIPVGPGRGSAAGSLVAYCLGITNIDPLKYNLLFERFLNPERVTMPDIDIDFCFERR 407

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG ++V+QIITFG++ A+AA+RDVGRAL + YS+VD + K+IP      +
Sbjct: 408  QEVIDYVVRKYGEDKVSQIITFGTMAARAAIRDVGRALDIAYSEVDIVAKMIPMQIGMNI 467

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   +     D  +  +++ ++ LEG+ RHASTHAAG+VI   P+++ VP+ +
Sbjct: 468  -GKALEMNPELKAKYEQDNLIKDMIDTARLLEGMPRHASTHAAGVVISKDPITEYVPLQK 526

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606
            +   +   TQF M  +E+ GL+K DFLGL+TLT+++ ++D + +      D+  +  +D 
Sbjct: 527  N--DESVTTQFPMGQLEELGLLKMDFLGLRTLTVIRDAVDLVYENYNTKLDIDRLEMNDP 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              + ++    T G+FQLES+GM Q ++ +QP  +EDIIA +SLYRPGP+D I  Y   KN
Sbjct: 585  NVFKIIGEGKTSGVFQLESAGMTQFMKELQPTSLEDIIAGISLYRPGPMDQIPRYIKNKN 644

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                +   HPL++ +L  T G ++YQEQVMQI + L GYS+  +D++RRAM KK    M+
Sbjct: 645  VPAGVKYDHPLLENILNVTYGCMVYQEQVMQIVRDLGGYSMGRSDLVRRAMSKKKISVME 704

Query: 727  KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI             G  +NG+ + IA  IF+ +  FA Y FNKSHAAAYAV++Y
Sbjct: 705  QERKNFIHGIDDENGNIVVMGCVRNGVDEKIANKIFDEMMDFASYAFNKSHAAAYAVVAY 764

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTAW+K +YPVEF+AA +   + + +KI ++  + +  NI+++PP +N   + F V + +
Sbjct: 765  QTAWLKCYYPVEFMAALLNSFLGSSDKISQYVHECKVLNIEVLPPDINESQMKFTVVNGK 824

Query: 835  IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + LAA+K VG    + ++ E   D  + S  DFC R+D K +N+R +ESL+ +GA D 
Sbjct: 825  IRFGLAAVKNVGEGAVKSVIDERRTDGNYRSFRDFCDRIDGKDVNKRCIESLIKSGAFDS 884

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF-----------SDKITLEK 942
             G  R +L+   + +      ++K       ++F    GT             D+     
Sbjct: 885  MGVYRSRLIAVFEKMLDGIAQIKKRNMEGQLSLFELSMGTDDKVNSSETSFYEDEDIYPD 944

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK----------------GYEES 986
             +   + V    E+ +LG Y SGHPL  ++  L KM                     +++
Sbjct: 945  INEYPNKVLLSMEKEMLGLYISGHPLSEFEEELNKMVSLFSSELNVDANQSEEAYSLDDA 1004

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G N+ +  ++ SK+ K TR  + + ++T  +     E   FP
Sbjct: 1005 KNISDGMNVIVGGIITSKKTKTTRNNNLMAFLTLEDLYGMMEVIVFP 1051


>gi|78044608|ref|YP_359983.1| DNA polymerase III DnaE [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996723|gb|ABB15622.1| DNA polymerase III, alpha subunit [Carboxydothermus hydrogenoformans
            Z-2901]
          Length = 1116

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/1030 (38%), Positives = 592/1030 (57%), Gaps = 36/1030 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  HS YSLL+GA  + +++ +    + PA+A+TD  NLF  +EF ++A A GI+P
Sbjct: 2    SFVHLHTHSCYSLLDGAGKIKDLVGRAVELKMPALALTDHGNLFGVIEFYKEAKAQGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G ++ +  +     T +       +  +VLL     GYQ L+ LVSR Y  +      
Sbjct: 62   ILGVEVYVAPRTRFDKTPK---IDDQLTHLVLLAKDRTGYQNLLRLVSRSYT-EGYYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L E  ++GLI L+   +G I         + A +    ++ +FG +  Y+ LQ 
Sbjct: 118  RVDKQLLAE-NSQGLIALSSCLAGEIPELILSGQREKAREVAGIYRDIFGKENFYLELQY 176

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++     +++ L+    +PLVATN+  ++ +E  + HDVL+A+     ++   R +
Sbjct: 177  HGISEQKVVNRELIALSKQLNIPLVATNDVHYILKEHAKTHDVLLAIQTGKSINDPGRMK 236

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + YLK   EM  IF +LP+AL+NT+ IA +C+   +    +LP F   E     K 
Sbjct: 237  FPTEEFYLKTPYEMELIFGELPDALKNTLNIAEQCNLEFEFGRYLLPDFPVPEG----KT 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L+     GL  R            ++ + RL  EL +I +M FSGYFLIV DFI++
Sbjct: 293  PAQYLKELCFQGLYKRYPNPG-------EEVKTRLLHELKIIEQMGFSGYFLIVWDFIRY 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I VGPGRGS AGS+ AY L ITDIDPL++ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 346  AREKGIMVGPGRGSAAGSLVAYTLEITDIDPLKYGLLFERFLNPERVSMPDIDVDFCFER 405

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI Y+  KYG +RVAQIITFG++ AKAA+RDVGRAL  PYS+VD++ KLIPN     
Sbjct: 406  RQEVIDYLYQKYGEDRVAQIITFGTMAAKAAVRDVGRALDWPYSEVDKIAKLIPNVLGIT 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +    I      +     +P V  LL++++++EG+ RHAS HAAG+VI    + + +P++
Sbjct: 466  LEEA-IETTPELKTLYQNNPKVRELLDLARQIEGMPRHASVHAAGLVIAPEEIDKHIPLF 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDD 605
            +     +  TQF    +E+ GL+K D LGL+TLT+++K+L     Q G +++L  IP DD
Sbjct: 525  KTS-EGVVTTQFEKDTVEELGLLKIDLLGLRTLTVIEKALDFIKKQTGKEINLKDIPLDD 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
             +TY LL    T+G+FQLES GMRQ L+ ++P  IED+IALV+LYRPGP+ + +   + N
Sbjct: 584  EKTYKLLGEGDTVGVFQLESQGMRQILKELKPTSIEDLIALVALYRPGPLGSGMVEDFIN 643

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R++G+  +   HP ++P+L+ET GVI+YQEQVM IA +L+G+SL EAD+LRRAMGKK  E
Sbjct: 644  RRHGRVPVEYPHPDLEPILRETYGVIVYQEQVMLIASVLAGFSLGEADLLRRAMGKKKPE 703

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +   K  FI  +   G  +  A  IF L+  FA YGFNKSH+AAYA ++Y TAW+K ++
Sbjct: 704  IIAALKNDFIERSVARGYPREKAEEIFNLIEYFAGYGFNKSHSAAYAFVAYYTAWLKANF 763

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PV FLAA +    DN++K+  + +D ++  I+++PP +N   VDF +    I + LAA+K
Sbjct: 764  PVAFLAALLISVKDNLDKVTVYAEDCQRRGIKVLPPDINLSEVDFTISGQEIRFGLAAVK 823

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
             VG   A  I+E     PF    DF  R+D K +N+RV+ESL+ AGA   FG++R  LL 
Sbjct: 824  NVGEAAAAKIIEERQKGPFRDFNDFLHRIDKKTVNKRVIESLIKAGAFASFGFNRKTLLN 883

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
            +LD+  ++     K        +           + LE     +       E+  LG Y 
Sbjct: 884  NLDDALEF---YSKKSNGVQLTLGDFLPEADRYNLRLE--EEFSKLELLRMEKESLGLYL 938

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            +GHPL   +  ++K                 I   A++   ++  TR+G  + +      
Sbjct: 939  TGHPLAGLRSFIQKHCNLK-------ENKEKIYYPAILAEIKRTVTRRGEPMAFALLEGL 991

Query: 1024 AKEYEANFFP 1033
             +  EA  FP
Sbjct: 992  NQTVEAVIFP 1001


>gi|258405519|ref|YP_003198261.1| DNA polymerase III, alpha subunit [Desulfohalobium retbaense DSM
            5692]
 gi|257797746|gb|ACV68683.1| DNA polymerase III, alpha subunit [Desulfohalobium retbaense DSM
            5692]
          Length = 1159

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1038 (39%), Positives = 603/1038 (58%), Gaps = 26/1038 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL  H+ YSLL+GA+ + ++  +       ++AI+D  NLF AL+F   A   G++P
Sbjct: 3    DFTHLHCHTEYSLLDGAIRIGDLCQQAVDFGFSSVAISDHGNLFGALDFYLTAKKFGVKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +   D    T        +   +VLL     GY  L+ LVSR +L +      
Sbjct: 63   IIGCEVYVAPGDR--RTKHTDKDIRSGYHLVLLAQNLTGYYNLVRLVSRGWL-EGFHYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L +   EGLI L+    G +            +     +  LF  R Y+ LQ +
Sbjct: 120  RVDKELLSQW-NEGLIALSACLKGEVPYGLRHEGMSRGKALAEEYSALFPGRFYLELQAN 178

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     Q+++LA T +LPLVATN+  +LS  D EAHD+L+ +  +     KDR R 
Sbjct: 179  GIPEQVTLNEQLLELAETTKLPLVATNDCHYLSYNDVEAHDILLCIQTNAQYYAKDRMRF 238

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + Y +   EM   F+  P+ALEN   IAR C+  L +     P +   +     +  
Sbjct: 239  DTQELYYRPPEEMEQAFAHCPQALENVGAIARNCNVELDLGQNYFPVYDVPQG----RTL 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E E       GL  RLA+  +      + Y QRLD EL+VI    F  YFLIV DFI WA
Sbjct: 295  EEEFIRLVREGLRTRLAK--LPYTVDEEVYWQRLDTELDVICAKGFPAYFLIVQDFINWA 352

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+  IPVGPGRGS AGS+ AY L IT++DPLR++LLFERFLN +R SMPD D+DFC +RR
Sbjct: 353  KEQGIPVGPGRGSAAGSLVAYCLGITNLDPLRYNLLFERFLNVERASMPDIDVDFCYNRR 412

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVIRYV  KYG E VAQI TFG+++AKA +RDVGRAL + +++ D++ KL+P+D    +
Sbjct: 413  EEVIRYVTAKYGKESVAQITTFGTMKAKAVVRDVGRALGLSFAETDKIAKLVPDDLKMTI 472

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD-RPLSQLVPMY 546
              +A+  +         D +V +L+++S++LEGL RHASTHAAGIVI D  PL   +P+Y
Sbjct: 473  D-KALEQEPDLAALAENDETVAKLIDVSRRLEGLARHASTHAAGIVISDSHPLEDHLPLY 531

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
               +    VTQF+MK +EK GLIKFDFLGLKTLT++  +L    Q      D+  +P +D
Sbjct: 532  LG-KKGEVVTQFDMKKVEKVGLIKFDFLGLKTLTVIADTLHLAQQAGKSVPDIDTLPLED 590

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
              T+ LL    T G+FQLESSGMR  ++ +QP   EDIIAL++LYRPGP+++ +   +  
Sbjct: 591  EATFALLCRTETDGVFQLESSGMRNVIKDLQPTSFEDIIALLALYRPGPLESGMVTDFIR 650

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+  +   HPL++P+L+ T GVI+YQEQVM+IA  ++ YSL + D+LRRAMGKK   
Sbjct: 651  RKHGEIPVEYPHPLLEPILEATYGVILYQEQVMRIASDMANYSLGDGDILRRAMGKKDPS 710

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M +Q+ +F++GA +N I +  A  IF+L+ KFA YGFNKSH+AAYA++SYQTA++K HY
Sbjct: 711  VMAEQRTKFVNGAKENEIDEATATYIFDLMEKFAGYGFNKSHSAAYALVSYQTAYLKAHY 770

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF+AA +T E+ N +K+       R+  I+++PP VN     F V + ++ + L+ +K
Sbjct: 771  PVEFMAALITSEVSNTDKVIAHINACREMGIEVLPPDVNHSERHFTVENEKLRFGLSGVK 830

Query: 844  GVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      ++ E   + P+ SL DFC RV S+K+ +RVLESL+ +GA+D  G SR  LL
Sbjct: 831  NVGGGAIEALVAERRRNGPYASLLDFCKRVGSRKVTKRVLESLIKSGAMDSLGCSRASLL 890

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-------DKITLEKFSVENSSVRFENE 955
             +LD +   AQ   ++++    ++ A      S         I   +    +   R + E
Sbjct: 891  AALDKVVSTAQRQSRDKSRGQLSLMAMMGEEDSCVLSGIGMDIEEAQVEEWDDEKRLQYE 950

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  LGF+ SGHPL  ++  L++  +   ++         +R A +V   ++  T+KG R+
Sbjct: 951  KEALGFFLSGHPLLRFREELKRQRLLSLQDCGELGGDTEVRTAVLVTGVKEHVTKKGGRM 1010

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +    +     E   FP
Sbjct: 1011 AFCQIEDLTGTGEMTMFP 1028


>gi|241204110|ref|YP_002975206.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv.
            trifolii WSM1325]
 gi|240858000|gb|ACS55667.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
            trifolii WSM1325]
          Length = 1165

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 641/1031 (62%), Positives = 810/1031 (78%), Gaps = 6/1031 (0%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P F+HL+VHS+YSLLEGAL L  IL K   D QPAIAITDTNNLF ALEFSQKA   G+
Sbjct: 16   TPGFIHLRVHSAYSLLEGALPLKKILYKATGDSQPAIAITDTNNLFVALEFSQKAMEEGL 75

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            QPIIGCQ+ IDM D L+   +G       +P+IVLL +T  GY+RL++LVSR YL  +  
Sbjct: 76   QPIIGCQVSIDMGDGLETEKRGGQQALVKLPAIVLLAATDAGYERLVDLVSRAYLGGESN 135

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q+V I  SWL+E GTEGLI LTG  +GP+D A        AE RLLT K+LFGDRLYV L
Sbjct: 136  QAVHISASWLEEAGTEGLIALTGALTGPVDVAIKEGHPAQAEARLLTLKRLFGDRLYVEL 195

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            QRH  YD+  E +++ LAY H+LPLVATN + F + +DY+AHD LMAVAH+ +VS   R 
Sbjct: 196  QRHGTYDKRHEQKIIGLAYAHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQ 304
            R+TPDHYLK+R+EMV +F+DLPEALENT+EIA RCSF+L+   PILPRF     + ++ +
Sbjct: 256  RLTPDHYLKSRAEMVKLFADLPEALENTIEIATRCSFVLKTRKPILPRFTGATDDAEEAE 315

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            + E +ELR +AV GL++RLA   ++ GY  +DYR+RLDFEL+VI RM+F GYFLIVADFI
Sbjct: 316  RAEASELRRQAVEGLDMRLATLGMSAGYEEKDYRERLDFELSVIERMRFPGYFLIVADFI 375

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 376  KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA
Sbjct: 436  DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495

Query: 485  HPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +P    +AI ++ + +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV
Sbjct: 496  NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+ GVKVDL+ IP 
Sbjct: 556  PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKLGVKVDLAAIPL 615

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN 
Sbjct: 616  DDKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNA 675

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G E++ SIHP+ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK 
Sbjct: 676  RKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMD+Q+ERF+ GA +NG+SK  A NIFELLAKFA+YGFNKSHAAAYA++SYQTA+MK HY
Sbjct: 736  EMDQQRERFVVGAVRNGVSKPQADNIFELLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASMTL+M N EK+  F QDA++  I+++ PSV +    F+ GDNRIYY+LAA+K
Sbjct: 796  PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQSSFRHFETGDNRIYYALAALK 855

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG +   HI+E   DKPF S+EDFC R+D +++NRRVLESL++AGA DCF   R +L  
Sbjct: 856  GVGESAVDHIVEVRGDKPFASIEDFCLRIDPRQVNRRVLESLIYAGAFDCFDMDRAELAA 915

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             LD +  YAQ  ++N+ +   +IF     +  +KI+L  FS    S R   E +VLGFY 
Sbjct: 916  GLDRVLGYAQRAQENKLSGQSDIFGSTLTSGPEKISLPPFSPWLPSERLLKEFQVLGFYL 975

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            + HPLD Y  IL+KM ++ + E  A I+    N RLA  V+SKQ++KTR G+++G + FS
Sbjct: 976  TAHPLDSYNNILQKMRVQTFAEFSAAIKQGAANARLAGTVISKQERKTRTGNKMGIIVFS 1035

Query: 1022 EPAKEYEANFF 1032
            + + ++EA  F
Sbjct: 1036 DSSGQFEAVLF 1046


>gi|323693196|ref|ZP_08107414.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
 gi|323502679|gb|EGB18523.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
          Length = 1176

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1047 (36%), Positives = 571/1047 (54%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+ +  +  +  +       ++AITD   ++  ++F + A  AGI+P
Sbjct: 18   AFTHLHVHTEYSLLDASSKIKELTARAKELGMDSLAITDHGVMYGVIDFYRAAKEAGIKP 77

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +         N           ++LL     GYQ L+++VS+ + ++      
Sbjct: 78   IIGCEIYVAPGSRFDRENVNGE--DRYYHLILLAENNVGYQNLMKIVSKGF-VEGFYYKP 134

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+    L+E  +EG+I L+    G + R       + A K  L ++++FG+   ++ LQ 
Sbjct: 135  RVDFEVLREY-SEGIISLSACLGGEVQRYLTRGMYEEACKSALRYQEIFGEGNFFLELQD 193

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +      +++++    +PL ATN+  ++ +ED E+HD+L+ +     V+ ++R R
Sbjct: 194  HGIPAQKTVNQGLLRMSQELGIPLTATNDCHYIYKEDVESHDILLCIQTGKKVADENRMR 253

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  YLK+  EM  IF    +AL+NT +IA RC+  ++     LP+F   E       
Sbjct: 254  YEGGQFYLKSEEEMREIFPYAADALDNTHKIAERCNVDIEFGVTKLPQFDVPEG----YT 309

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     G                   ++RL++EL VI  M +  YFLIV DFI +
Sbjct: 310  SWEYLRKLCFDGFNKHYPDDDGTL-------KERLEYELGVIQSMGYVDYFLIVWDFIHF 362

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK ++I VGPGRGS AGS+ AY+L ITDIDP+R+ LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 363  AKSHDIMVGPGRGSAAGSIVAYSLGITDIDPIRYQLLFERFLNPERVSMPDIDIDFCFER 422

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV +KYG +RV QI+TFG+L AK  +RDVGR L MPY++ D + K+IP D    
Sbjct: 423  RQEVIDYVVSKYGKDRVVQIVTFGTLAAKGVVRDVGRVLDMPYAKCDSIAKMIPGDLGMT 482

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+      R A   D  V  L+++S++LEGL RH S HAAG+VI    + + VP+ 
Sbjct: 483  LD-KALKASPDLRNAYQEDDEVKYLIDMSRRLEGLPRHTSMHAAGVVISKASVDEYVPLS 541

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDD 605
            R        TQF M  +E+ GL+K DFLGL+TLT++Q ++    +   K +DL  I ++D
Sbjct: 542  RAA-DGSITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVRLAEKTCKKTIDLYNIDYND 600

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                  + T    G+FQLESSGM+  ++ ++P+ +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 601  KNVLDAIGTGKNDGVFQLESSGMKSFMKELKPENLEDIIAGISLYRPGPMDFIPRYLKGK 660

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N K+ I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D++RRAM KK    M
Sbjct: 661  NDKKSITYECPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKKGSVM 720

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +K+++ F+         G   NGI +  A +I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 721  EKERQNFVYGNGEEGVKGCIANGIDEKTANHIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 780

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YPVEF+AA MT   DNV K+ ++    RQ  ++I+PP +N     F V    I Y
Sbjct: 781  YLKYYYPVEFMAALMTSVKDNVTKVSEYIMACRQMGMKIVPPDINEGEGGFSVSGGSIRY 840

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+AIK +G +    I+ E      F +LEDF  R+ SK++N+R LES + +GA+D    
Sbjct: 841  GLSAIKSIGQSVVEEIVKERRERGEFKTLEDFVDRMSSKEVNKRTLESFIKSGAMDSLPG 900

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q       +       +KN       +F    E+   + ++T               
Sbjct: 901  TRKQKFLVSAQLLDQKNKEKKNSMEGQMTMFDFVAEEEKENFQVTFPNVGEYTKDELLYF 960

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQQ 1006
            E+ +LG Y SGHP++ Y  +  K       +              G  + +  M+ +K  
Sbjct: 961  EKEMLGVYISGHPMEAYIGLWEKNVTARTSDFIVDEETGEAQVRDGAIVTIGGMLTAKTV 1020

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K TR    + +VT  +     E   FP
Sbjct: 1021 KTTRTNKMMAFVTIEDLYGSVEVLVFP 1047


>gi|292670795|ref|ZP_06604221.1| DNA-directed DNA polymerase III alpha subunit [Selenomonas noxia ATCC
            43541]
 gi|292647416|gb|EFF65388.1| DNA-directed DNA polymerase III alpha subunit [Selenomonas noxia ATCC
            43541]
          Length = 1130

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1034 (36%), Positives = 600/1034 (58%), Gaps = 30/1034 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+GA  +  ++ +       ++A+TD   ++ A+ F ++A A GI P
Sbjct: 2    AFAHLHVHTEYSLLDGASRIKELVRRTKELGMDSVAMTDHGVMYGAVRFYKEAKAQGIHP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC++ +  +   +   + +        ++LL     GY+ L++LVS   + +      
Sbjct: 62   VIGCEVYLAPRMRQE---RAEVDGQRYYHLILLAENELGYRNLVQLVSLANI-EGYYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            RI    L+    EG+I L+   +G I +A    + + A++ +  +  +FG    ++ +Q 
Sbjct: 118  RIDKELLRRYH-EGIIALSACVAGEIPQAILRGNIEQADEIVREYIDIFGHANFFLEIQD 176

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +       +  LA  H + LVATN+  ++  +D E HD+L+ V     ++  DR R
Sbjct: 177  HGLPEEKTVNHALRDLAEKHGVRLVATNDVHYVHADDSEFHDILLCVQTGRTINDPDRMR 236

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + PD+YLK+  EM  +F+D P ALENTV+IA RC          LP +   +     + 
Sbjct: 237  FSGPDYYLKSEQEMAELFADYPGALENTVKIAERCQVDFTFGELQLPYYPMPKGY---ES 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            ++  LR      L +R             + RQRLD+EL VI  M ++ YFLIV DFI +
Sbjct: 294  DDVYLRALCEERLPLRYPD-------ADDEIRQRLDYELGVIHNMGYASYFLIVWDFINY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+++ + VGPGRGS AGS+ AY L IT+IDPL+++LLFERFLNP+R+SMPD DIDF    
Sbjct: 347  AREHGVAVGPGRGSAAGSIVAYLLGITNIDPLQYALLFERFLNPERVSMPDIDIDFDDIN 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R  VI YV+ +YG + VAQI TFG++ AK A+RDV R L+MP+S+V  + KLIP +    
Sbjct: 407  RGRVISYVKERYGEDHVAQIATFGTMGAKGAIRDVARVLEMPFSEVSTITKLIPAELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ + + FR+    D +  R++++++K+EGL R+ S HAAG+VI   PL+  VP++
Sbjct: 467  LD-RALQESTDFRKRYEEDEAARRVIDLARKIEGLPRNTSIHAAGVVIAKSPLADQVPVW 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
              V     VT+F+   +E  GL+K DFLGL+TLT++  +++ + +  GV++D+  IP +D
Sbjct: 526  --VSEGTLVTEFDKDDVEALGLLKMDFLGLRTLTIIADTVNHVRRSHGVELDIDQIPLED 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
             +T  +L    T  +FQ+ES+GM   ++ +QP    D+I  V+LYRPGP+ + +   + +
Sbjct: 584  AQTAKMLCNGDTGAVFQMESAGMTNLVKDLQPKGFVDLIPTVALYRPGPLGSGMVTDFID 643

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
              +GK+++V +HPL++P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK  E
Sbjct: 644  GLHGKKEVVYMHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADILRRAMGKKKHE 703

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  QKE F+ G  KNGI  ++A  IF+LL  FADYGFNKSH+AAY ++++QTA++K HY
Sbjct: 704  LLMAQKEIFLQGCEKNGIEASLANRIFDLLTHFADYGFNKSHSAAYGLLAWQTAYLKAHY 763

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF+A  +T  MD  +KI  + Q  RQ  I+I+PP +N+    F +    I + LAA++
Sbjct: 764  PVEFMAGVLTSIMDKTDKIPVYIQLCRQMKIKILPPDINSSVATFGIEGGAIRFGLAAVR 823

Query: 844  GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      +    A+   F SL DFC+RVD + LN+R +ESL+  GA D  G  R QLL
Sbjct: 824  NVGENAIASMERVRAEGGKFRSLVDFCARVDMRTLNKRAIESLIKCGAFDSIGMERNQLL 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL-EKFSVENSSVRFENEQRVLGF 961
             +LD   + A   +++  +    +F  +      +I +        +  R   E+   GF
Sbjct: 884  AALDAAMQDAARRQRDLISGQIGLFGQDTMEEVQQIQISSDVPPSTTRERLTWEKEATGF 943

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y +GHPLD Y   L    +    +   T       +R+  ++ + ++  T+KG  + +  
Sbjct: 944  YITGHPLDDYSDTLA--CLLPIGDIPGTIRKDRQLVRIGGILTNTKRFTTKKGDTMLFAE 1001

Query: 1020 FSEPAKEYEANFFP 1033
              +     E   FP
Sbjct: 1002 LEDFTGRIEVTIFP 1015


>gi|291519904|emb|CBK75125.1| DNA polymerase III catalytic subunit, DnaE type [Butyrivibrio
            fibrisolvens 16/4]
          Length = 1161

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1055 (36%), Positives = 576/1055 (54%), Gaps = 47/1055 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YSLL+G+  +   + K       A AITD  N++  ++F ++  AAGI P
Sbjct: 2    SFVHLHTHTEYSLLDGSNKIKAYVKKCVDMGMTAAAITDHGNMYGVIDFYKECKAAGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC++ +                     ++LL    +GYQ LI++VS+ Y +D      
Sbjct: 62   VLGCEVYVAPGSRFDRER--VQGEDHYYHLILLAENNQGYQNLIKIVSKGY-VDGYYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+    LQ+   +G+I L+   +G + RA        A+   L ++  FG+   ++ LQ 
Sbjct: 119  RVDFEILQQYH-QGIICLSACLAGEVARALNRGLYDEAKAVALKYRDCFGEGNYFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++      +++L+    +PLVATN+  + ++ED ++HDVL+ +     +  +DR R
Sbjct: 178  HGIEEQKNVNQGLMRLSRETGIPLVATNDCHYTNKEDADSHDVLLCIQTGKKLQDEDRMR 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + Y+K+  EM+ +F    +A+  T EIA RC   ++     LP F   E  D    
Sbjct: 238  FETSEFYVKSEEEMLQLFPYATDAIGRTQEIADRCHVEIEFGVTKLPHFEVPEGYD---- 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GL+          G  A + + RL +EL VI  M +  YFLIV DFI +
Sbjct: 294  SWTYLNKLCYEGLDR-------RYGDKASELKPRLKYELEVIKNMGYVDYFLIVWDFINY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ + IPVGPGRGS AGS+ +Y   IT+IDP+++SL+FERFLNP+R+SMPD DIDFC +R
Sbjct: 347  ARTHGIPVGPGRGSAAGSLVSYTTGITNIDPMKYSLVFERFLNPERVSMPDIDIDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG + V QI+TFG+L+A+  +RDVGR + +PY  VD + K+IP D    
Sbjct: 407  RGEVIDYVIEKYGKDCVTQIVTFGTLKARGVIRDVGRVMDLPYGYVDSIAKMIPMDLGMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +S  R    +D  V  L+++++ LEGL R+   HAAG+VI  +P+ + VP+ 
Sbjct: 467  LD-KAMEANSELRAVYESDDQVKNLIDVARTLEGLPRNTGMHAAGVVIAGKPMDEYVPVA 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDD 605
            R       VTQF M  IE+ GL+K DFLGL+TLT++  ++       G+K+D+  I ++D
Sbjct: 526  RGADGSSIVTQFVMTTIEELGLLKMDFLGLRTLTVINDAVKLVEKNHGIKLDMDAIDYND 585

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                 +++     G+FQLES+GM+  ++ ++P  IEDIIA +SLYRPGP+D I  Y   K
Sbjct: 586  QGVMDMISAGKCEGVFQLESTGMKNFMKELKPHSIEDIIAGISLYRPGPMDFIPSYIKGK 645

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N K+ IV   P ++P+L  T G I+YQEQVMQI Q L+GYSL  AD +RRAM KK +  +
Sbjct: 646  NAKDAIVYDTPELEPILAPTYGCIVYQEQVMQIVQQLAGYSLGGADEIRRAMSKKKQYVI 705

Query: 726  DKQKERF----------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            ++ +E F                I G    GIS  +A  I++ +  FA Y FNKSHAAAY
Sbjct: 706  EENREIFVNGGQIENHITGKITQIPGCVSKGISSEVANGIYDHMVDFAKYAFNKSHAAAY 765

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            AV++ QTA++K +YP+EF+AA MT  +D   K+ ++    R   IQ++PP VN     F 
Sbjct: 766  AVVAIQTAYLKKYYPIEFMAALMTSVIDASGKVAEYIAVCRGNGIQVLPPDVNNGEGRFS 825

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V  ++I Y L AIK VG  T   I+ +   +  +  LEDF  R+     N+R +E+L+ A
Sbjct: 826  VDGDKIRYGLYAIKSVGRNTIDAIIYDREKNGTYRDLEDFIKRISKYDANKRTIENLIKA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKITLEKFSVE 946
            GALD    +R Q       I       +KN      ++  FA E+     KIT+ K    
Sbjct: 886  GALDTMDGNRRQKCMVFPEILDSVNNKKKNEIEGQMSLFDFASEEQKEDLKITMPKVDEF 945

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLA 998
            +  +    E+ ++G Y SGHPLD Y  +L+K       + +        +    + + + 
Sbjct: 946  DKEMLLAFEKELMGVYVSGHPLDDYISLLQKNVTAQANKFLIDEETGEVSVKDDSEVIVG 1005

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             M+     K T++G  + ++T  +     E   FP
Sbjct: 1006 GMITGITNKYTKQGKAMAFITIEDLTGTIEVIVFP 1040


>gi|323485857|ref|ZP_08091192.1| hypothetical protein HMPREF9474_02943 [Clostridium symbiosum
            WAL-14163]
 gi|323400845|gb|EGA93208.1| hypothetical protein HMPREF9474_02943 [Clostridium symbiosum
            WAL-14163]
          Length = 1176

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1047 (36%), Positives = 571/1047 (54%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+ +  +  +  +       ++AITD   ++  ++F + A  AGI+P
Sbjct: 18   AFTHLHVHTEYSLLDASSKIKELTARAKELGMDSLAITDHGVMYGVIDFYRAAKEAGIKP 77

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +         N           ++LL     GYQ L+++VS+ + ++      
Sbjct: 78   IIGCEIYVAPGSRFDRENVNGE--DRYYHLILLAENNVGYQNLMKIVSKGF-VEGFYYKP 134

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+    L+E  +EG+I L+    G + R       + A K  L ++++FG+   ++ LQ 
Sbjct: 135  RVDFEVLREY-SEGIISLSACLGGEVQRYLTRGMYEEACKSALRYQEIFGEGNFFLELQD 193

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +      +++++    +PL ATN+  ++ +ED E+HD+L+ +     V+ ++R R
Sbjct: 194  HGIPAQKTVNQGLLRMSQELGIPLTATNDCHYIYKEDVESHDILLCIQTGKKVADENRMR 253

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  YLK+  EM  IF    +AL+NT +IA RC+  ++     LP+F   E       
Sbjct: 254  YEGGQFYLKSEEEMREIFPYAADALDNTHKIAERCNVDIEFGVTKLPQFDVPEG----YT 309

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     G                   ++RL++EL VI  M +  YFLIV DFI +
Sbjct: 310  SWEYLRKLCFDGFNKHYPDDDGTL-------KERLEYELGVIQSMGYVDYFLIVWDFIHF 362

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK ++I VGPGRGS AGS+ AY+L ITDIDP+R+ LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 363  AKSHDIMVGPGRGSAAGSIVAYSLGITDIDPIRYQLLFERFLNPERVSMPDIDIDFCFER 422

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV +KYG +RV QI+TFG+L AK  +RDVGR L MPY++ D + K+IP D    
Sbjct: 423  RQEVIDYVVSKYGKDRVVQIVTFGTLAAKGVVRDVGRVLDMPYAKCDSIAKMIPGDLGMT 482

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+      R A   D  V  L+++S++LEGL RH S HAAG+VI    + + VP+ 
Sbjct: 483  LD-KALKASPDLRSAYQEDDEVKYLIDMSRRLEGLPRHTSMHAAGVVISKASVDEYVPLS 541

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDD 605
            R        TQF M  +E+ GL+K DFLGL+TLT++Q ++    +   K +DL  I ++D
Sbjct: 542  RAA-DGSITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVRLAEKTCKKTIDLYNIDYND 600

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                  + T    G+FQLESSGM+  ++ ++P+ +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 601  KNVLDAIGTGKNDGVFQLESSGMKSFMKELKPENLEDIIAGISLYRPGPMDFIPRYLKGK 660

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N K+ I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D++RRAM KK    M
Sbjct: 661  NDKKSITYECPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKKGSVM 720

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +K+++ F+         G   NGI +  A +I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 721  EKERQNFVYGNGEEGVKGCIANGIDEKTANHIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 780

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YPVEF+AA MT   DNV K+ ++    RQ  ++I+PP +N     F V    I Y
Sbjct: 781  YLKYYYPVEFMAALMTSVKDNVTKVSEYIMACRQMGMKIVPPDINEGEGGFSVSGGSIRY 840

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+AIK +G +    I+ E      F +LEDF  R+ SK++N+R LES + +GA+D    
Sbjct: 841  GLSAIKSIGQSVVEEIVKERRERGEFKTLEDFVDRMSSKEVNKRTLESFIKSGAMDSLPG 900

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q       +       +KN       +F    E+   + ++T               
Sbjct: 901  TRKQKFLVSAQLLDQKNKEKKNSMEGQMTMFDFVAEEEKENFQVTFPNVGEYTKDELLYF 960

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQQ 1006
            E+ +LG Y SGHP++ Y  +  K       +              G  + +  M+ +K  
Sbjct: 961  EKEMLGVYISGHPMEAYIGLWEKNVTARTSDFIVDEETGEAQVRDGAIVTIGGMLTAKTV 1020

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K TR    + +VT  +     E   FP
Sbjct: 1021 KTTRTNKMMAFVTIEDLYGSVEVLVFP 1047


>gi|302871937|ref|YP_003840573.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
            OB47]
 gi|302574796|gb|ADL42587.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
            OB47]
          Length = 1140

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1033 (36%), Positives = 602/1033 (58%), Gaps = 30/1033 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YSLL+GA  ++ + +++      A+AITD   ++  ++F + A   GI+P
Sbjct: 2    SFVHLHLHTEYSLLDGACRIDRLFERVKELNMNAVAITDHGAMYGVIDFYKAAKENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +               +  +VLL    +GY+ L ++VS  + ++      
Sbjct: 62   IIGCEVYLAPRTRFDKEP---NIDNDIHHLVLLAIDNDGYRNLSKIVSIGF-VEGFYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L +  ++GL+ LT   +G I +       +     +  +K++FG+  Y  LQ H
Sbjct: 118  RVDREVLSKY-SKGLVALTSCLAGEIPKLILREQKEKLYDAISFYKEVFGENFYFELQYH 176

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++    +++++L+  +++PLVATN+  +L +ED   HD+L+ +     ++  DR   
Sbjct: 177  YIDEQRFVNNELMRLSKKYQIPLVATNDVHYLKKEDRNLHDILLCIQTGKTINDSDRMEF 236

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM  +F  +PEAL+NT+EIA +C+   +     LP+F   E  +   + 
Sbjct: 237  PTDEFYLKSSEEMHQLFGYIPEALKNTLEIAEKCNVEFEFGKINLPKFQLPEGKN---DS 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+  A+ G + R ++         +    RL  EL VI  M F  YFLIV DFI +A
Sbjct: 294  FEYLKELALEGFKKRYSKNN-------KTAYDRLMMELQVIKDMGFVEYFLIVQDFINYA 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+NNI VGPGRGS AGSV AY L IT++DP+++ LLFERFLNP+R+SMPD DIDFC  RR
Sbjct: 347  KQNNIMVGPGRGSAAGSVVAYCLGITNVDPIKYDLLFERFLNPERVSMPDIDIDFCYQRR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RV+QIITFG++ A+A++RDVGR L +PYSQVD + K+IP  P   +
Sbjct: 407  QEVIDYVTRKYGEDRVSQIITFGTMAARASIRDVGRVLGIPYSQVDEIAKMIPFSPGMTI 466

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                +  +   +     + +V ++++ ++ LEG+ RHAS HAAG+VI + P++ LVP+  
Sbjct: 467  DKA-LEINHELKRIYERNDTVRKIIDTARNLEGMPRHASVHAAGVVISNSPITDLVPL-- 523

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D  VTQF M  +E+ GL+K DFLGL+TLT++Q +L+ + + RG+++DL  I ++D 
Sbjct: 524  ARTDDAIVTQFPMTTLEELGLLKMDFLGLRTLTVIQNTLELVKKNRGIEIDLDRIDYNDK 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y  ++   T G+FQLESSGM+Q ++ ++P+ +EDIIA +SL+RPGP+D I VY   KN
Sbjct: 584  NVYEFISEGNTNGVFQLESSGMKQFMKELKPENLEDIIAGISLFRPGPMDQIPVYIQNKN 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +EKI  +HP ++P+L  T G I+YQEQVMQI + L+GYSL  AD++RRAM KK  + + 
Sbjct: 644  NREKIEYLHPSLEPILNVTYGCIVYQEQVMQIFRTLAGYSLGRADLVRRAMAKKKADILM 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            ++K+RFI GA  NG+ K  A  IF ++  FA Y FNKSHAAAYA+++YQTA++K +Y +E
Sbjct: 704  EEKDRFIEGAVANGVKKETAERIFAIIEDFASYAFNKSHAAAYAILAYQTAYLKKYYTIE 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+ + +T  M++ EK+  + ++ R+F I I+PP +N    DF +  N I + L AIK +G
Sbjct: 764  FMTSLITSVMNSNEKVGMYIEECRKFGITILPPDINKSSYDFTIEGNSIRFGLRAIKSLG 823

Query: 847  TTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                 HI++   +   F  L DF  RVD+  +N+R++E+L+ +GA D    +R  LL S+
Sbjct: 824  ENVIAHILKEREEKGEFKDLYDFIMRVDTNTVNKRIIENLIRSGAFDFTRINRNSLLASV 883

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            ++I        K +     + F    G  ++    +      +    + E+  +G Y S 
Sbjct: 884  EDIL--VLKQAKKKNANQFSFF-EISGNENESFEYKSLPQPTAQELMKMEKDTIGIYISS 940

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNN-----IRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            HPL+ Y   + +  +    E       +      I +  ++   + K T+    + +   
Sbjct: 941  HPLERYTEEISRYNVTPLSEISTMSEEDEYKFEQILVCGILKEVKVKLTKSNQTMAFAKL 1000

Query: 1021 SEPAKEYEANFFP 1033
             +     E  FFP
Sbjct: 1001 EDLTDSVEILFFP 1013


>gi|301063202|ref|ZP_07203753.1| putative DNA polymerase III subunit alpha [delta proteobacterium
            NaphS2]
 gi|300442697|gb|EFK06911.1| putative DNA polymerase III subunit alpha [delta proteobacterium
            NaphS2]
          Length = 1155

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1039 (39%), Positives = 607/1039 (58%), Gaps = 19/1039 (1%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL VH+ YSLL+GA+ ++ +L+K  A    ++AITD  N+F  ++F  +A  
Sbjct: 1    MSDLP-FVHLHVHTEYSLLDGAIRIDRMLEKAKAQGMDSVAITDHGNMFGVVDFFDRAAK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIGC++ +   D    T   +   P    +VLLV   +GY+ L  LV+   L   
Sbjct: 60   AGIKPIIGCEVYVAPGDRRDRTP-SQNGGPNAYHLVLLVMNEQGYKNLSTLVTLGNLQG- 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLY 183
                 R+ +S L+E   +GL+ L+   +G +           A+++      +F GDR +
Sbjct: 118  FYYHPRVDMSALREY-NQGLVALSACLAGHVPYLIRNGQMDAAKEKAREMASVFDGDRFF 176

Query: 184  VNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ ++  ++   ++ + +L+    +P+VATN+  +L+ EDYEAHDVL+ +     V +
Sbjct: 177  LELQANKMAEQKVVNRGLRELSKDLSIPMVATNDCHYLNREDYEAHDVLLCIQTGKSVDE 236

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            + R R  + + Y K R EM     D  EAL NT  +AR C + ++      P F   E  
Sbjct: 237  EKRLRFTSNEFYFKTRREMEEALPDDAEALNNTAHVARLCQYEMRFGEYKFPVFHVPEKQ 296

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             +        R      L  +  +         ++Y +RL +EL +I +M F+GYFLIVA
Sbjct: 297  SLNDMLMALSRKGLARRLAQKEDEEGPIGPELRREYEERLQYELEIILKMGFAGYFLIVA 356

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++A  ++I VGPGRGS AGS+ AY L IT+I+P+++ LLFERFLNP R+SMPD DID
Sbjct: 357  DFIEYALNHDIAVGPGRGSAAGSLVAYCLNITNIEPIKYGLLFERFLNPARISMPDIDID 416

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC + RD+VI+YV +KYG   V+QIITFG+++A+  +RDVGR L +P S+VDR+ KL+P 
Sbjct: 417  FCINGRDQVIQYVADKYGRNNVSQIITFGTMKARGVIRDVGRTLNVPLSEVDRIAKLVPE 476

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P   +    I ++   +    A     +LL IS+ LEGL RHASTHA G+VI DRPL++
Sbjct: 477  GPGVKLDRA-IREEPELKSLENAPGRSQKLLSISRSLEGLARHASTHACGVVISDRPLTE 535

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSL 600
             +P+Y+       + QF M  +EK GLIKFDFLGLKTLT+L+++L  +      K+DL+ 
Sbjct: 536  YLPLYKGS-KGEIMAQFTMDKVEKLGLIKFDFLGLKTLTVLKEALKLIEASAGLKIDLNR 594

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV- 659
            I  +D  TY L     T G+FQLESSGM++ L  + P+  EDIIALV+LYRPGP+ + + 
Sbjct: 595  ISLEDKGTYQLCADGKTTGVFQLESSGMKELLRKLNPEIFEDIIALVALYRPGPLGSNMV 654

Query: 660  -VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + N K+GK ++    P + P+LKET GVI+YQEQVM+IAQ+L+ Y+++EAD LR+A+G
Sbjct: 655  DDFINGKHGKIRVSYFLPQLKPILKETYGVILYQEQVMKIAQVLANYTMAEADELRKAVG 714

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  E M + + RFI GA +NG+S  +A  +F L+ KF  YGFNKSH+AAYA+I+YQTA+
Sbjct: 715  KKKPEVMARHRARFIDGAKENGVSADMAEKLFGLIEKFGGYGFNKSHSAAYAMIAYQTAY 774

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K HYPV+F+ A +TL+M N +K  K   + R   IQI+PP VN    DF V +++I + 
Sbjct: 775  LKAHYPVQFMCALLTLDMGNQDKTIKNIAECRTMGIQILPPDVNESQADFSVVEDQIRFG 834

Query: 839  LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            LAA+K VG      ++E       F  L DFC R++  K+NRRVLE L+  GA D     
Sbjct: 835  LAAVKNVGQKAVEMLIEERDKHGHFKGLLDFCRRMEGSKVNRRVLEGLIQCGAFDFTNAF 894

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK---ITLEKFSVENSSVRFEN 954
            R +L + LD+  K              N+F   +    +    + L          +   
Sbjct: 895  RSRLFEGLDDALKLCGARH---DPNQLNMFGSLELGEGEAGGLLELPDLPEWEEKEKLRR 951

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  LGFY +GHPL+ ++  +++       +       + ++LA +V S + K+T++G +
Sbjct: 952  EKEALGFYITGHPLEGFQKAIKRFATCLVNDLPTQNDKDQVKLAGVVESLKLKRTKRGDK 1011

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            +  +   +     E   FP
Sbjct: 1012 MAIMHLEDLTGSTEVVVFP 1030


>gi|291520859|emb|CBK79152.1| DNA polymerase III catalytic subunit, DnaE type [Coprococcus catus
            GD/7]
          Length = 1156

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1047 (35%), Positives = 566/1047 (54%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL VH+ YSLL+G+  +  ++ ++      ++AITD   ++  ++F ++A   GI P
Sbjct: 2    DFTHLHVHTEYSLLDGSNKIKELIARVKELGMDSVAITDHGVMYGVIDFYKEAQKQGIHP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC++ +        +  G         +VLL     GY  L+++VS+ +  +      
Sbjct: 62   VIGCEVYVAPGSRFDKS--GNMSSNRYHHLVLLAENDTGYHNLMKIVSKGFT-EGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L+E   EG+I L+   +G I  A      Q A        ++FG D  Y+ LQ 
Sbjct: 119  RVDKELLKEYH-EGIIALSACLAGEIPDALRKGLYQTALNAAQEMSEIFGEDHFYLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+      +++LA    L LVATN+  +   ED +AHDVL+ +     V+  DR R
Sbjct: 178  HGIPDQKTVNQGLLRLAKDTGLELVATNDIHYTLAEDAQAHDVLLCIQTGKKVADTDRMR 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  EM S+F    EA+ENT +IA RC   ++     LP F   E  D    
Sbjct: 238  YEGGQYYVKSPEEMASLFPYAREAIENTHKIAMRCHVDIEFGHYKLPEFPVPEGYD---- 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L+     G   R  Q         +  ++R+ +ELN I  M F  YFLIV DFI +
Sbjct: 294  SWEYLQKLVWDGFYERYPQ-------ADEKLKERVSYELNTIKTMGFVDYFLIVWDFIHY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+++I VGPGRGS AGS+ +Y L IT +DP+R++LLFERFLNP+R++MPD D+DFC +R
Sbjct: 347  AKEHDIMVGPGRGSAAGSIVSYCLDITTLDPIRYNLLFERFLNPNRVTMPDIDVDFCFER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG ERV QI+TFG++ A+  +RDVGR L +PY+  D + K+IPN+    
Sbjct: 407  RQEVIDYVVRKYGKERVVQIVTFGTMAARGVIRDVGRVLDLPYAICDSVAKMIPNELGIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   ++    D S+  L++++++LEGL RH S HAAG+VI  + + + VP+ 
Sbjct: 467  ID-KALKMNPELKKLYDGDDSIHNLIDMARRLEGLPRHTSMHAAGVVISPKAVDEFVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            R    D+  TQ+ M  +E+ GL+K DFLGL+TLT+++ ++  +       VD+  I ++D
Sbjct: 526  RGA-DDVITTQYTMTTLEELGLLKMDFLGLRTLTVIRNAVKLINADGRHHVDMHEIDYND 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
               + ++ T  T GIFQLESSGM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 585  KAVFDMIGTGKTDGIFQLESSGMKSFMKELKPHNLEDIIAGISLYRPGPMDFIPRYIKGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N    I    P ++ +L+ T G I+YQEQVMQI   L+GY L  +D++RRAM KK  + M
Sbjct: 645  NEPASITYECPQLEEILEPTYGCIVYQEQVMQIVMKLAGYDLGRSDLVRRAMSKKKADVM 704

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K+++ F+         G   NGI +  A  IF+ +  FA Y FNKSHAAAY ++SYQTA
Sbjct: 705  AKERQYFVYGNDELGVPGCIANGIDEATANRIFDEMTDFAKYAFNKSHAAAYTIVSYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+K +YPVEF+AA MT  +DN  K+ ++    RQ  I+I+PP +N     F V + RI Y
Sbjct: 765  WLKYYYPVEFMAALMTSVIDNSVKVAEYIMTCRQMGIKILPPDINHGVSSFSVDNGRILY 824

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+A+K +G      I +      PF SL++F  R+  K++N+R +E+ + AGA D FG 
Sbjct: 825  GLSAVKSIGRPVVAAIEQERTLAGPFTSLKNFIERMSGKEVNKRSIENFIKAGAFDSFGA 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     I        K   +    +F    E+   + +I        +       
Sbjct: 885  TRRQQMMVYAQIMDQVAQDRKKNISGQMTLFDFMDEEEKQAFEIRYPNVGEYDKGTLLSF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPLD      R+       +            +  + + +  MV  K  
Sbjct: 945  EKEVLGVYISGHPLDDVAESWRRNVTAVTSDFYVNEESGMPNVVDQSLVVIGGMVTGKTV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + ++   +     E   FP
Sbjct: 1005 KSTKNNKMMAFIQLEDLLGTVEVIIFP 1031


>gi|255657348|ref|ZP_05402757.1| DNA polymerase III DnaE [Clostridium difficile QCD-23m63]
 gi|296451837|ref|ZP_06893556.1| DNA-directed DNA polymerase III alpha subunit [Clostridium difficile
            NAP08]
 gi|296879767|ref|ZP_06903741.1| DNA-directed DNA polymerase III alpha subunit [Clostridium difficile
            NAP07]
 gi|296259316|gb|EFH06192.1| DNA-directed DNA polymerase III alpha subunit [Clostridium difficile
            NAP08]
 gi|296429238|gb|EFH15111.1| DNA-directed DNA polymerase III alpha subunit [Clostridium difficile
            NAP07]
          Length = 1189

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1065 (35%), Positives = 599/1065 (56%), Gaps = 57/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K   F HL VH+ YSLL+G   +  ++ +       +IAITD   +F  ++F + A  
Sbjct: 1    MNK--DFAHLHVHTEYSLLDGFSRVKKLIKRAKELNMSSIAITDHGCMFGVIDFYKTAIK 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIGC++    +                  +VLL    EGY+ LI++VS  Y ++ 
Sbjct: 59   EGIKPIIGCEVYTAARGLRDKDPNYDKYQG---HLVLLAKNMEGYKNLIKIVSTSY-VEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 R+ +  L++   +G+I L+   +G + RA    + + A++    ++ +FG +  +
Sbjct: 115  FYYKPRVDMEELKK-HNKGIIALSACLAGDVARALMNRNYEKAKQFAFDYRDIFGEENFF 173

Query: 184  VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H   ++    S +V+L+    +PLVATN+  ++++ED + HDVLM +     ++ 
Sbjct: 174  LEIQDHNLPEQKEVNSGLVKLSKETGIPLVATNDVHYVNKEDSKIHDVLMCIQMGKTLND 233

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             +R R  + + YLK+R EM  +F    EA++NTV+IA  C+     +   LP++   E  
Sbjct: 234  PNRMRFGSDEFYLKSREEMEELFPYALEAIDNTVKIADMCNVEFDFNTIHLPKYDVPEG- 292

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                  E  LR     GL+             + +  +RL++EL+VI +M +  YFLIV 
Sbjct: 293  ---YTPETYLRELCFNGLKE-------RYDNPSDEILERLNYELDVIEKMGYVEYFLIVW 342

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI ++K+NNI VGPGRGS AGS+ AY L ITDIDP+++SLLFERFLNP+R+SMPD DID
Sbjct: 343  DFINFSKENNIIVGPGRGSAAGSIVAYTLKITDIDPIKYSLLFERFLNPERISMPDIDID 402

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RR+EVI YV+ KYG + VAQIITFG++ AKAA+RDVGR L + Y++VD++ K IP 
Sbjct: 403  FCYERREEVIDYVKRKYGDDHVAQIITFGTMGAKAAIRDVGRVLDIGYNKVDKIAKEIPF 462

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +  +A+  +   +E    DP    ++ IS+++EG+ RHASTHAAG+VI   P+ +
Sbjct: 463  ALGMTID-KALDTNPNLKELYDQDPETKEIINISKQIEGMLRHASTHAAGVVISKNPVDE 521

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD---- 597
             VP+Y+    D   TQF M  +E+ GL+K DFLGL+TLT+++ +LD + +  V  +    
Sbjct: 522  YVPLYK--HQDAITTQFTMTTLEELGLLKMDFLGLRTLTVIRDTLDLIEKNRVIKNYTEK 579

Query: 598  --LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
               S + +DD + Y +L++  TLG+FQLES+GMR  ++ ++PD  EDI+A +SL+RPGP+
Sbjct: 580  IDFSKMDYDDPKVYEMLSSGNTLGVFQLESAGMRSFMKQLKPDNFEDIVAGISLFRPGPM 639

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D+I  Y   K+  + +  +H  + P+++ T G ++YQEQVMQ+ + L GYS   +D++RR
Sbjct: 640  DSIPAYIKNKSNPKDVTYLHEKLKPIMEVTYGCLVYQEQVMQVVRDLGGYSYGRSDLVRR 699

Query: 716  AMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNK 763
            AM KK  + M+++++ FI             G  +NG+ + IA  IF+ +  FA Y FNK
Sbjct: 700  AMSKKKMDVMEEERQYFIHGKFDEDGNIEIAGCIRNGVEEEIANKIFDDMIDFARYAFNK 759

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAAAY V++Y+TA++KT+YPVEF+AA +T  M N +K+ ++ ++ +   I ++PP +N 
Sbjct: 760  SHAAAYGVLAYETAYLKTYYPVEFMAALITSVMGNTDKVVEYIRECKALEIDVLPPDINK 819

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVL 882
                F V  + I + LAA+K VG     +I+     +  F  L D   R+D K  N+RV+
Sbjct: 820  SFSKFSVEGDNIRFGLAAVKNVGVNIINNIIAERESNGLFVDLVDLVKRLDQKDTNKRVI 879

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----HEKGTFSDK 937
            ESL+  GA D    +R  L+   +++ +      K       ++F       E   F   
Sbjct: 880  ESLIKCGAFDNISENRASLMAGYESLLESVSMDRKKNVQGQISLFDAFGDSEEDSDFQQI 939

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--- 994
             +L K        R   E+ VLG Y SGHPL  ++  L++       +  +         
Sbjct: 940  YSLPKRQEYEERERLNLEKEVLGMYVSGHPLSQFEKELQEKTSMDNGKLNSLKEEEESYL 999

Query: 995  ------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  + +  M+V+K  K T++   + ++   +     E   FP
Sbjct: 1000 QMNETDVIMGGMIVTKTIKTTKRNEIMAFLELEDLYGAIEIVVFP 1044


>gi|158319634|ref|YP_001512141.1| DNA polymerase III DnaE [Alkaliphilus oremlandii OhILAs]
 gi|158139833|gb|ABW18145.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs]
          Length = 1164

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/1057 (37%), Positives = 614/1057 (58%), Gaps = 49/1057 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL VH+ YSLL+G   +N  ++++      AIAITD  ++F  ++F + A  
Sbjct: 1    MSNQ--FVHLHVHTEYSLLDGFTVINKAMERVKEMGMNAIAITDHGSMFGVVDFYKAAKK 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIGC++    +       Q          +VLL    EGYQ +I++VS  +L + 
Sbjct: 59   NGIKPIIGCEVYTAPRSMADKDPQKDKNQG---HLVLLAKNEEGYQNIIKMVSNGFL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LY 183
                 RI    L E  ++G+I L+   +G I +    +  + A+   L    +F +   Y
Sbjct: 115  FYYKPRIDYDEL-ERHSKGIICLSACLAGDIQQLLLQDQYESAKALALRLNAMFEENSFY 173

Query: 184  VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ H   ++      +++L+    +PLVATN++ ++++ED +AHD+L+ +    +V  
Sbjct: 174  LELQDHNMAEQKKVNLGLIKLSRETGIPLVATNDAHYINKEDAKAHDILLCIQTGKIVED 233

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            ++R R    + YLK+  EM+ IF   PEA+ NTV+IA +C+F    +   LP +   +  
Sbjct: 234  QERMRFPNDEFYLKSPEEMMKIFDFAPEAISNTVKIAEQCNFDFDFNTIHLPEYHVPQDV 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            +     E+ LR     GL               ++   RL+ EL+VI +M +  YFLIV 
Sbjct: 294  NK----EDYLRKLCFEGLNK-------RYTSVTEELESRLEGELSVIEKMGYVEYFLIVW 342

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++AK N IPVGPGRGS AGS+ AY L ITD+DP++++L+FERFLNP+R+SMPD DID
Sbjct: 343  DFIKYAKDNGIPVGPGRGSAAGSIVAYTLGITDVDPIKYNLIFERFLNPERISMPDIDID 402

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RR+EVI YV+ KYG ++VAQIITFG++ A+AA+RDVGR + MPY++VD++ K IP 
Sbjct: 403  FCYERREEVIDYVKQKYGEDKVAQIITFGTMAARAAIRDVGRVINMPYNEVDKIAKQIPF 462

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +  +A+  +   +     +     L++++++LEG+ RHASTHAAG+VI  +PL +
Sbjct: 463  AIGMTIE-KALKMNPELKSIYEENEQGRYLIDMARRLEGMPRHASTHAAGVVIAKKPLKE 521

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSL 600
             VP+Y  V  D   TQF M  +E+ GL+K DFLGL+TLT+++ ++D      G+K+DLS 
Sbjct: 522  HVPLY--VHDDNSTTQFTMGTLEELGLLKMDFLGLRTLTVIKDAIDLIEKNHGIKLDLSD 579

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
              +DD + Y L++   TLG+FQLES+GM Q L+ ++P+C EDIIA +SLYRPGP+D+I  
Sbjct: 580  SKYDDEKVYDLISKGDTLGLFQLESAGMIQFLKELKPNCFEDIIAGISLYRPGPMDSIPR 639

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y   KN  EKI  IH  ++P+L  T G ++YQEQ+MQI + L+GYS   +D++RRAMGKK
Sbjct: 640  YIENKNNPEKIKYIHESLEPILNVTYGCMVYQEQIMQIVRDLAGYSYGRSDLVRRAMGKK 699

Query: 721  IKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
              + M+++++ FI             G  +NG+ + +A  I++ +  FA+YGFNKSHAAA
Sbjct: 700  KMDVMEQERKNFIYGIVNEKGEVEVAGCIRNGVPEDVANKIYDEMIDFANYGFNKSHAAA 759

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YAV++Y+TA++KT+Y VEF+AA MT  M N  K+ ++ QD ++ NI+I+PPS+N     F
Sbjct: 760  YAVLAYETAYLKTYYKVEFMAALMTSVMGNTSKVVQYIQDCKKQNIKILPPSINRSFSKF 819

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V    I ++L A+K VG     ++++       F +  DFC RV+SK +N+R +ESL+ 
Sbjct: 820  TVEGESIRFALGAVKNVGIGMINNLVQIRETTGDFSTFLDFCQRVESKDINKRAVESLIK 879

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSV 945
             GA D  G +R QL+ S + I    Q  ++ +     ++F    E     + +       
Sbjct: 880  CGAFDNMGGNRAQLMASFEGIMDNIQQEKRRKLEGQIDLFQMNEEMDASMNTVNFPDIKD 939

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA---------TIRGNNIR 996
             +  +R   E+ V+GFY SGHPL  Y+  L ++      + +             G  I 
Sbjct: 940  FSEKIRLSMEKEVVGFYISGHPLSEYEKELEQIVSANSAQLIEAMENLAESQLKDGQPII 999

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  M+     K TR    + ++   +     E   FP
Sbjct: 1000 VGGMIAEINSKITRNNQMMAFIVLEDLFGSLECIVFP 1036


>gi|291458628|ref|ZP_06598018.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078
            str. F0262]
 gi|291419161|gb|EFE92880.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078
            str. F0262]
          Length = 1188

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1050 (35%), Positives = 583/1050 (55%), Gaps = 43/1050 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+SYSLL+GA  +  ++ ++      A+AITD   ++  ++F ++A A GI P
Sbjct: 29   SFTHLHVHTSYSLLDGAGKIPEMIARVKELGMDAVAITDHGVMYGVIDFYKEAKAQGIHP 88

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +        +            +VLL    EGY  L++LV+R +  +      
Sbjct: 89   ILGCEIYLSPASRFDKSF--GKAEARYYHLVLLAENEEGYHNLMKLVTRGFT-EGFYYKP 145

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L+     GLI L+   +G + R    +  + A    L ++++FG    ++ LQ 
Sbjct: 146  RVDFELLRRYH-GGLIALSACLAGELARDLSRDQYEEARDAALRYQEIFGKGNFFLELQD 204

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++      +++L     +P+VATN+  +   ED +AHD+L+ +     ++ +DR R
Sbjct: 205  HGYPEQRKVNQGLLRLHEDTGIPMVATNDIHYTFREDAKAHDILLCLQTGKKLNDQDRMR 264

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  Y+K+  EM  +F    EA+ NT +IA RC   ++     LP++   +       
Sbjct: 265  YPGGQFYIKSEEEMRELFPYAEEAILNTEKIAERCQVEIEFGHYHLPKYEVPDGF----T 320

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR     GL           G  A+ YR+RL +EL+VI+ M F+ YFLIV D+I +
Sbjct: 321  PLSYLRKLCEEGLVR-------RYGEEAEHYRERLSYELSVISSMGFTEYFLIVWDYIHF 373

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + I VGPGRGS AGS+ AY++ ITDIDP+R+ LLFERFLNP+R++MPD D+DF  +R
Sbjct: 374  AKTHGIAVGPGRGSAAGSIVAYSIGITDIDPMRYQLLFERFLNPERVTMPDIDVDFEYER 433

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG E+V+QIITFG+L AK  +RDVGR + +PY++ D + KLIPN+    
Sbjct: 434  RQEVIDYVTKKYGKEQVSQIITFGTLAAKGVVRDVGRVMDIPYAKCDMIAKLIPNELNMT 493

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+      ++    D    R++++S++LEGL RH+STHAAG+VI    + + VP+ 
Sbjct: 494  LE-RALFGSPDLKKLYEEDEETRRIIDMSRRLEGLPRHSSTHAAGVVIAGSAVEEFVPLS 552

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
            ++       TQF M  +E+ GL+K DFLGL+TLT++Q ++ F  +    ++DL  + ++D
Sbjct: 553  KN-TDGAVTTQFTMTTVEELGLLKMDFLGLRTLTVIQDAIRFAEKDYGKRIDLERMDYED 611

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             + Y +++     G+FQLES GM   ++ ++P  +ED+IA VSLYRPGP+D I  Y   K
Sbjct: 612  PKVYEMISRGDCAGVFQLESGGMVSFMKRLRPTSLEDVIAGVSLYRPGPMDFIPKYIEGK 671

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
               E++   HP I+P+LK T G I+YQEQVMQI + L+GYS+  +D+LRRAM KK    M
Sbjct: 672  KHPERVSYEHPRIEPILKSTYGCIVYQEQVMQIVRELAGYSMGRSDLLRRAMSKKKASVM 731

Query: 726  DKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +K++  F        I G    GIS+ +A +I++ +  FA Y FNKSHAA YA+I+YQTA
Sbjct: 732  EKERRNFVYGNPEEGIPGCLSAGISEQVANHIYDEMIDFAKYAFNKSHAACYALIAYQTA 791

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YP EF AA M+  MDN  K  ++ + AR   I I+PP +N     F V D  I Y
Sbjct: 792  YLKCYYPAEFYAALMSSFMDNAGKTAEYLEFARDREIPILPPDINLAESGFSVSDASIRY 851

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+A+KG+G + A  I+ E      F  LEDF  R+  + +NRR +ESL+++GALD    
Sbjct: 852  GLSAVKGIGRSAAEQIIEERRRGGKFRDLEDFLLRISDRGVNRRAVESLIYSGALDSLPG 911

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHE---NIFAHE-KGTFSDKITLEKFSVENSSVRF 952
            +R + + +L  + +     ++N         ++   + +   + + T+        +   
Sbjct: 912  NRREKVTALPFLLESKSKEKRNAMAGQMTLADLLGEDNEEAEAFRFTMPVLPEFPKAELL 971

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI---------RGNNIRLAAMVVS 1003
             NE+  LG Y SGHPLD  + +L                         G  + +  ++  
Sbjct: 972  RNEKDALGVYLSGHPLDSDRELLDFYVDAKAGAFRTDPESGEEGGLSEGQLVTVGGLLTE 1031

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +QK T+K   + ++T  +     E   FP
Sbjct: 1032 IRQKVTKKNELMAFLTLEDRQGSIEVTVFP 1061


>gi|126701019|ref|YP_001089916.1| DNA polymerase III DnaE [Clostridium difficile 630]
 gi|254977018|ref|ZP_05273490.1| DNA polymerase III DnaE [Clostridium difficile QCD-66c26]
 gi|255094345|ref|ZP_05323823.1| DNA polymerase III DnaE [Clostridium difficile CIP 107932]
 gi|255102599|ref|ZP_05331576.1| DNA polymerase III DnaE [Clostridium difficile QCD-63q42]
 gi|255308424|ref|ZP_05352595.1| DNA polymerase III DnaE [Clostridium difficile ATCC 43255]
 gi|255316098|ref|ZP_05357681.1| DNA polymerase III DnaE [Clostridium difficile QCD-76w55]
 gi|255518759|ref|ZP_05386435.1| DNA polymerase III DnaE [Clostridium difficile QCD-97b34]
 gi|255651937|ref|ZP_05398839.1| DNA polymerase III DnaE [Clostridium difficile QCD-37x79]
 gi|260684901|ref|YP_003216186.1| DNA polymerase III DnaE [Clostridium difficile CD196]
 gi|260688559|ref|YP_003219693.1| DNA polymerase III DnaE [Clostridium difficile R20291]
 gi|306521687|ref|ZP_07408034.1| DNA polymerase III DnaE [Clostridium difficile QCD-32g58]
 gi|115252456|emb|CAJ70299.1| DNA polymerase III DnaE subunit alpha [Clostridium difficile]
 gi|260211064|emb|CBA66425.1| DNA polymerase III alpha subunit [Clostridium difficile CD196]
 gi|260214576|emb|CBE07133.1| DNA polymerase III alpha subunit [Clostridium difficile R20291]
          Length = 1189

 Score =  809 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1065 (35%), Positives = 600/1065 (56%), Gaps = 57/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K   F HL VH+ YSLL+G   +  ++ +       +IAITD   +F  ++F + A  
Sbjct: 1    MNK--DFAHLHVHTEYSLLDGFSRVKKLIKRAKELNMSSIAITDHGCMFGVIDFYKTAIK 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIGC++    +                  +VLL    EGY+ LI++VS  Y ++ 
Sbjct: 59   EGIKPIIGCEVYTAARGLRDKDPNYDKYQG---HLVLLAKNMEGYKNLIKIVSTSY-VEG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 R+ +  L++   +G+I L+   +G + RA    + + A++  L ++ +FG +  +
Sbjct: 115  FYYKPRVDMEELKK-HNKGIIALSACLAGDVARALMNRNYEKAKQFALDYRDIFGEENFF 173

Query: 184  VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H   ++    S +V+L+    +PLVATN+  ++++ED + HDVLM +     ++ 
Sbjct: 174  LEIQDHNLPEQKEVNSGLVKLSKETGIPLVATNDVHYVNKEDSKIHDVLMCIQMGKTLND 233

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             +R R  + + YLK+R EM  +F    EA++NTV+IA  C+     +   LP++   E  
Sbjct: 234  PNRMRFGSDEFYLKSREEMEELFPYALEAIDNTVKIADMCNVEFDFNTIHLPKYDVPEG- 292

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                  E  LR     GL+             + +  +RL++EL+VI +M +  YFLIV 
Sbjct: 293  ---YTPETYLRELCFNGLKE-------RYDNPSNEILERLNYELDVIEKMGYVEYFLIVW 342

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI ++K+NNI VGPGRGS AGS+ AY L ITDIDP+++SLLFERFLNP+R+SMPD DID
Sbjct: 343  DFINFSKENNIIVGPGRGSAAGSIVAYTLKITDIDPIKYSLLFERFLNPERISMPDIDID 402

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RR+EVI YV+ KYG + VAQIITFG++ AKAA+RDVGR L + Y++VD++ K IP 
Sbjct: 403  FCYERREEVIDYVKRKYGDDHVAQIITFGTMGAKAAIRDVGRVLDIGYNKVDKVAKEIPF 462

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +  +A+  +   +E    DP    ++ IS+++EG+ RHASTHAAG+VI   P+ +
Sbjct: 463  ALGMTID-KALDTNPNLKELYDQDPETKEIINISKQIEGMLRHASTHAAGVVISKNPVDE 521

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD---- 597
             VP+Y+    D   TQF M  +E+ GL+K DFLGL+TLT+++ +LD + +  V  +    
Sbjct: 522  YVPLYK--HQDAITTQFTMTTLEELGLLKMDFLGLRTLTVIRDTLDLIEKNRVIKNYTEK 579

Query: 598  --LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
               S + +DD + Y +L++  TLG+FQLES+GMR  ++ ++PD  EDI+A +SL+RPGP+
Sbjct: 580  IDFSKMDYDDPKVYEMLSSGNTLGVFQLESAGMRSFMKQLKPDNFEDIVAGISLFRPGPM 639

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D+I  Y   K+  + +  +H  + P+++ T G ++YQEQVMQ+ + L GYS   +D++RR
Sbjct: 640  DSIPAYIKNKSNPKDVTYLHEKLKPIMEVTYGCLVYQEQVMQVVRDLGGYSYGRSDLVRR 699

Query: 716  AMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNK 763
            AM KK  + M+++++ FI             G  +NG+ + IA  IF+ +  FA Y FNK
Sbjct: 700  AMSKKKMDVMEEERQYFIHGKFDEDGNIEIAGCIRNGVEEEIANKIFDDMIDFARYAFNK 759

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAAAY V++Y+TA++KT+YPVEF+AA +T  M N +K+ ++ ++ +   I ++PP +N 
Sbjct: 760  SHAAAYGVLAYETAYLKTYYPVEFMAALITSVMGNTDKVVEYIRECKALEIDVLPPDINK 819

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVL 882
                F V  + I + LAA+K VG     +I+     +  F  L D   R+D K  N+RV+
Sbjct: 820  SFSKFSVEGDNIRFGLAAVKNVGVNIINNIIAERESNGLFVDLVDLVKRLDQKDTNKRVI 879

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----HEKGTFSDK 937
            ESL+  GA D    +R  L+   +++ +      K       ++F       E   F   
Sbjct: 880  ESLIKCGAFDNISENRASLMAGYESLLESVSMDRKKNVQGQISLFDAFGDSEEDSDFQQI 939

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--- 994
             +L K        R   E+ VLG Y SGHPL  ++  L++       +  +         
Sbjct: 940  YSLPKRQEYEERERLNLEKEVLGMYVSGHPLSQFEKELQEKTSMDNGKLNSLKEEEESYL 999

Query: 995  ------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  + +  M+V+K  K T++   + ++   +     E   FP
Sbjct: 1000 QMNETDVIMGGMIVTKTIKTTKRNEIMAFIELEDLYGAIEIIVFP 1044


>gi|150391763|ref|YP_001321812.1| DNA polymerase III DnaE [Alkaliphilus metalliredigens QYMF]
 gi|149951625|gb|ABR50153.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens QYMF]
          Length = 1155

 Score =  809 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/1053 (37%), Positives = 600/1053 (56%), Gaps = 48/1053 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YSLL+G  ++N  LD++      A+AITD  ++F  ++F + A   GI+P
Sbjct: 2    SFVHLHVHTQYSLLDGFATINQTLDRVKELGMDALAITDHGSMFGVVDFYKAAKKKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++    +    MT++      +   +VLL     GYQ LI+LVS  YL        
Sbjct: 62   IIGCEVYTAARG---MTDKDPVKDKSQGHLVLLAKNNVGYQNLIKLVSESYLH-GFYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+  + + +  TEGLI L+   +G + R    N  + A+++ L  +++FG    Y+ LQ 
Sbjct: 118  RVDYNEIAK-HTEGLIALSACLAGEVQRLILQNQYEKAKEKALMLEEMFGKGNFYLELQD 176

Query: 189  HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H+  + +    +++++     +PLVATN+  +  +ED EAHD+L+ +    +++ + R +
Sbjct: 177  HKLPEQQQVNEELIKMNQETGIPLVATNDVHYTDQEDAEAHDILLCIQTGKILNDEKRLK 236

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  YLK + EM  +F   PEAL NTV+IA  C          LP +         K 
Sbjct: 237  FPNDQFYLKTQKEMAKLFDYAPEALANTVKIAEMCQVDFDFDTIHLPNYDVAPG----KT 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            ++  LR     GL+              Q+ ++RL++EL +I +M +  YFLIV DFI++
Sbjct: 293  KQGYLRELCYEGLQY-------RYKEITQELKERLEYELGIIEQMGYMEYFLIVWDFIKY 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   I VGPGRGS AGS+ AY L ITDIDP+R++L+FERFLNP+R+SMPD DIDFC +R
Sbjct: 346  AKDQGIAVGPGRGSAAGSIVAYTLGITDIDPIRYNLIFERFLNPERVSMPDIDIDFCYER 405

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI YV+ KYG ++VAQIITFG++ A+ A+RDVGR + MPY++VD++ K IP      
Sbjct: 406  REEVINYVKAKYGQDKVAQIITFGTMAARGAIRDVGRVVNMPYNEVDQIAKEIPFTLGIT 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   R+    +   + L+ +++KLEG+ RHASTHAAG+VI  +PL Q +P+Y
Sbjct: 466  IE-KALEVNPVLRKMYQENDDANYLIRMAKKLEGMPRHASTHAAGVVIAKKPLDQHIPLY 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 +   TQF M  +E+ GL+K DFLGL+TLT+++ +L+ +    G++V      + D
Sbjct: 525  M--HDNSMTTQFTMGTLEELGLLKMDFLGLRTLTVIRDALELIKANHGLEVSFEDSEYTD 582

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             + Y L+    TLG+FQLES GM Q +  ++PD  EDI+A +SL+RPGP+++I  Y   K
Sbjct: 583  PKVYELIGRGETLGVFQLESQGMIQFMRELKPDNFEDIVAGISLFRPGPMESIPKYIEYK 642

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  EKI  +H  ++P+L  T G ++YQEQVMQ+ + L+GYS   +D++RRAMGKK ++ M
Sbjct: 643  NNHEKIEYLHESLEPILNMTYGCMVYQEQVMQVVRDLAGYSYGRSDLVRRAMGKKKRDVM 702

Query: 726  DKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            +++++ FI             G  + GI + IA  I++ +  FA+Y FNKSHAA+YAV+S
Sbjct: 703  EEERKYFIYGKESEAGELEIEGCIRRGIPENIANEIYDQMIDFANYAFNKSHAASYAVLS 762

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++K HYPVEF+AA MT  M N  K+  + QD ++  ++I+ PS+N     F V DN
Sbjct: 763  YQTAYLKCHYPVEFMAALMTSVMGNTLKVVHYIQDVKRQGMEILSPSINKSYSKFAVEDN 822

Query: 834  RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            +I + LAA+K VG      I+E       F S  DFC +V SK LN+R +ESL+  GA D
Sbjct: 823  QIRFGLAAVKNVGGNMIDAIVETRNHKGSFTSFTDFCQKVPSKDLNKRSIESLIKCGAFD 882

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVENSSV 950
            C    R QLL   + +        K        +F    G  S  ++  L      N  +
Sbjct: 883  CLEVYRAQLLAIYEKVLDSVYHDRKRNIQGQLGLFEGPSGMPSNLNEGLLPNIKEFNDKL 942

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----------VATIRGNNIRLAAM 1000
            R   E+ VLG Y SGHPL  Y+  L K       +                G+ + +  +
Sbjct: 943  RLNMEKEVLGLYISGHPLAAYEKELSKKVSAYSNQLVLSLEEDDNEQEWKEGDRVIIGGI 1002

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V+ K  K T+    + +VT  +     E   FP
Sbjct: 1003 VIEKTIKTTKHQQIMAFVTVEDLFGVVECVVFP 1035


>gi|328543710|ref|YP_004303819.1| DNA polymerase III subunit alpha [Polymorphum gilvum SL003B-26A1]
 gi|326413454|gb|ADZ70517.1| DNA polymerase III subunit alpha [Polymorphum gilvum SL003B-26A1]
          Length = 1146

 Score =  809 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 565/1028 (54%), Positives = 727/1028 (70%), Gaps = 12/1028 (1%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS+ SLLEGAL +  +LD   AD QPA+AITDT NLF A EFS KA  AGIQPI
Sbjct: 6    FVHLRVHSALSLLEGALPIKKLLDLAKADAQPALAITDTGNLFGAQEFSGKAWGAGIQPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGCQL +   D      + +   P +  +VLL ++  GY  L+EL SR YL         
Sbjct: 66   IGCQLAVAFDDG---GGEDRRGEPPLLDVVLLAASEAGYGNLMELSSRAYLDTATGLKPH 122

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +  + L+E  + GLI+LTGG +GPI RA    +  +AE RL      F +R YV LQRH 
Sbjct: 123  VPAALLEEK-SGGLILLTGGVNGPIGRALLAGNRTLAEARLKRLAAAFPNRTYVELQRHG 181

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              +  R E   ++LAY   LPLVATN + F   EDYEAHD L+ +A   V+ ++DR ++T
Sbjct: 182  MAEERRCEPGFLELAYELGLPLVATNEAFFPKREDYEAHDALICIAEGRVLIEEDRRKLT 241

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQKEE 307
            P+HY K+R+EM+ +F DLPEA  NTVEIARRC +      PILPRF   + + +  +K E
Sbjct: 242  PEHYFKSRAEMLELFCDLPEATANTVEIARRCHYRPLRRDPILPRFAGADADPEAAEKAE 301

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              ELR +A  GL+ RL    +A G   QDY  RLD+EL VI RMKF GYFLIVADFI+WA
Sbjct: 302  AEELRRQARDGLKARLEAHGLAPGLGQQDYWDRLDYELGVIERMKFPGYFLIVADFIKWA 361

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K ++IPVGPGRGSGAGSV A+ALTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQ RR
Sbjct: 362  KAHDIPVGPGRGSGAGSVVAWALTITDLDPMRFSLLFERFLNPERVSMPDFDIDFCQYRR 421

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVIRYVQ KYG  +VAQIITFGSLQA+A LRDVGR LQMPY QVDRLCKL+P +PA+PV
Sbjct: 422  EEVIRYVQEKYGRRQVAQIITFGSLQARAVLRDVGRVLQMPYGQVDRLCKLVPANPANPV 481

Query: 488  S-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  QAI D+ R REA   +  VDRLL ++QKLEGLYRHASTHAAG+VIGDRPL QLVP+Y
Sbjct: 482  TLAQAIGDEPRLREAAREEEIVDRLLTMAQKLEGLYRHASTHAAGVVIGDRPLEQLVPLY 541

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            RD RSD+PV QFNMK +E AGL+KFDFLGLKTLT++  ++  +A++GV VD++ +P DD 
Sbjct: 542  RDPRSDMPVAQFNMKMVEDAGLVKFDFLGLKTLTVIDTAVKLIARKGVTVDMASVPLDDA 601

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             TY LL    T+G+FQLES GMR+A+ GM+PD  EDIIALV+LYRPGP++NI VYN  K+
Sbjct: 602  RTYQLLARGETVGVFQLESQGMRRAIAGMKPDRFEDIIALVALYRPGPMENIPVYNAVKH 661

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+++   +HPL++P+LKET G+I+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI  EM+
Sbjct: 662  GEQEADYLHPLLEPILKETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIAAEME 721

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             Q+ RF+ GA + G+ +  A  IF+L+AKFA+YGFNKSHAAAYA++SY TAW+K ++PVE
Sbjct: 722  VQRARFVDGAVERGVDRDQAGTIFDLVAKFANYGFNKSHAAAYALVSYHTAWLKANHPVE 781

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+AASMTL++ N +K+  F Q+AR+  I I+PPS+N     F V D RI Y+L AIKGVG
Sbjct: 782  FMAASMTLDLGNTDKLGDFRQEARRMGIAIVPPSINRSMHPFDVDDGRIVYALGAIKGVG 841

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                +HI+EA   +PF SL DF  RV  + LN+R LESL  AGA D    +R ++L+ LD
Sbjct: 842  EQAVQHIVEARGTQPFRSLGDFARRVSPRFLNKRTLESLAAAGAFDDLEPNRARVLEGLD 901

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             I   AQ  E+N       +F    G   + + L + +    + R + E   +GFY S H
Sbjct: 902  RIIGIAQRTEENSVLGQNELF--GGGGEEEDLHLPEVAAWMPAERLQREHAAIGFYLSSH 959

Query: 967  PLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            PLD Y+P+L +M ++ + +   A  RG +  RLA  V+S+Q++KT+ G+R+G V  S+ +
Sbjct: 960  PLDEYQPLLERMRVQSWAQFSEAVKRGASAGRLAGTVISRQERKTKSGNRMGIVRLSDAS 1019

Query: 1025 KEYEANFF 1032
             ++EA  F
Sbjct: 1020 GQFEALLF 1027


>gi|153813022|ref|ZP_01965690.1| hypothetical protein RUMOBE_03430 [Ruminococcus obeum ATCC 29174]
 gi|149830824|gb|EDM85914.1| hypothetical protein RUMOBE_03430 [Ruminococcus obeum ATCC 29174]
          Length = 1155

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1046 (35%), Positives = 587/1046 (56%), Gaps = 41/1046 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G+  +   +D++      + AITD   ++  ++F + A AAGI PI
Sbjct: 3    FTHLHVHTEYSLLDGSNKIKEYVDRVKELGMDSAAITDHGVMYGVIDFYRAARAAGINPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +          +  +       +VLL    +GY  L+++VS+ + ++      R
Sbjct: 63   LGCEVYVAPGSRFDR--EAGSGEDRYYHLVLLAENNQGYSNLMKIVSKGF-VEGFYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            + L  L++   EG+I L+   +G + R       + A+   L ++ +FG    ++ LQ H
Sbjct: 120  VDLQLLEKYH-EGIIALSACLAGEVARFLTRGMYEDAKAAALRYQDIFGKGNFFLELQDH 178

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     Q++++     + LVATN+  +   ED + HDVL+ +     ++ +DR R 
Sbjct: 179  GIPEQQNVNQQLLKMHRETGIDLVATNDVHYTLAEDAQPHDVLLCLQTGKKLADQDRMRY 238

Query: 249  T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                +Y+K+  EM  +F    EALENT +IA+RC   ++     LP+F   +        
Sbjct: 239  EGGQYYVKSPEEMERLFPYATEALENTHKIAQRCHVEIEFGVTKLPKFGVPDG----YTS 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L      GLE R            ++ ++RL++EL  I  M +  YFLIV DFI++A
Sbjct: 295  WEYLNELCFKGLEERYQP-------VTEELKERLNYELTTIKNMGYVDYFLIVWDFIKYA 347

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            + ++I VGPGRGS AGS+ AY L IT +DP+R+ LLFERFLNP+R+SMPD D+DFC +RR
Sbjct: 348  RDHDIMVGPGRGSAAGSLVAYTLGITQLDPIRYDLLFERFLNPERVSMPDIDVDFCFERR 407

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV+ KYG + V QI+TFG+L A+  +RDVGR + +PY+QVD + K+IP +    +
Sbjct: 408  QEVIDYVRRKYGDDCVVQIVTFGTLAARGVIRDVGRVMDLPYAQVDTIAKMIPQELNITI 467

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +  F++    D  +  L++ +++LEGL RH S HAAG+VI  + +S+ VP+ R
Sbjct: 468  D-KALQMNPEFKKVYEEDKEIHELIDTAKRLEGLPRHTSMHAAGVVISQKDVSEYVPLSR 526

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                   VTQF M  +E+ GL+K DFLGL+TLT++Q ++  + Q  GVK+D+  I ++D 
Sbjct: 527  AS-DGSIVTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVHLVEQDTGVKLDMQHIDYNDK 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +    L T  + G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y   KN
Sbjct: 586  KVLDSLGTGHSDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPQYIRGKN 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              + I    P ++P+LK T G I+YQEQVMQI + L+GY+L  +D++RRAM KK    M+
Sbjct: 646  RPDTIKYDCPQLEPILKPTYGCIVYQEQVMQIVRNLAGYTLGRSDLVRRAMSKKKAAVME 705

Query: 727  KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K+++ F+         G   NGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTA+
Sbjct: 706  KERQNFVYGNEAEGVPGCIANGIPEQTANKIYDDMIDFAKYAFNKSHAAAYAVVSYQTAF 765

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YPVEF+AA MT  ++   K+ ++ Q  R+ NI+I+PP VN     F V +  I Y 
Sbjct: 766  LKYYYPVEFMAALMTSVIEMPIKVAEYIQVCRKMNIKILPPDVNRGAYGFSVDNGAIRYG 825

Query: 839  LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L+AIK VG      ++E   A+  + SL+DF  R+ +  +N+R +E+ + AGALDC   +
Sbjct: 826  LSAIKSVGRPVINALVEEREANGEYRSLKDFIERL-TGTVNKRAIENFIKAGALDCLEGN 884

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENE 955
            R Q +     I       +KN      ++F    E+     +I +      +  +    E
Sbjct: 885  RRQKMVVYSQIVDSIAQEKKNSFAGQMSLFDLVGEEDKKDYEIRMPDVEEYDKDMILGFE 944

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--------RGNNIRLAAMVVSKQQK 1007
            + VLG Y SGHPL+ Y+ I+ KM      +              G  + +  M+  K  K
Sbjct: 945  KDVLGIYLSGHPLEKYRNIMEKMISARTIDFQPDEESGIPKVYDGQKVIIGGMITEKTIK 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             TR    + ++T  +     E   FP
Sbjct: 1005 YTRNNKVMAFLTLEDLMGTVEIVVFP 1030


>gi|253682356|ref|ZP_04863153.1| DNA polymerase III subunit alpha [Clostridium botulinum D str. 1873]
 gi|253562068|gb|EES91520.1| DNA polymerase III subunit alpha [Clostridium botulinum D str. 1873]
          Length = 1166

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1061 (34%), Positives = 590/1061 (55%), Gaps = 57/1061 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YSLL+G+  +  ++ +       ++AITD   +F  ++F +KA  AGI+PI
Sbjct: 6    FVHLHTHTEYSLLDGSGKIGGLISRAKELGMKSLAITDHGTMFGCVDFYKKAKDAGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +            +        +VLLV   +GY+ L+++VS+  + +      R
Sbjct: 66   IGCEIYVSSNSMHIKRLDAENR---NHHLVLLVKNEQGYKNLMKIVSKASI-EGFYYKPR 121

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   +L+E  +EGLI L+   +G +       + + A +  L +K +F +  Y+ LQ H 
Sbjct: 122  VDHEYLKE-HSEGLIALSACLAGEVSYNLLNGTKEKAREIALFYKDIFKEGFYIELQYHG 180

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               + R    +V+LA   ++PLVATN+  ++ +ED ++H+VL+ +     +  +DR +  
Sbjct: 181  IDKQLRVNEMLVELARELDIPLVATNDVHYIKKEDAKSHEVLLCIQTGKTLDDEDRMKYE 240

Query: 250  PDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P ++  K+  EM   FS + +ALENT +IA  C+F    H   LP F   E  D      
Sbjct: 241  PQNFYLKSPEEMYETFSYVSDALENTNKIADECNFDYIFHESKLPNFPLPEGID----HF 296

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              ++     GLE       I       + ++RL++EL+VI  M +  YFLIV DF +++ 
Sbjct: 297  EYMKELCYKGLE-------IRYEKVTDELKERLEYELDVIKEMGYVDYFLIVWDFFRFSH 349

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ AY L IT IDP++++L+FERFLNP+R+SMPD D DFC +RR 
Sbjct: 350  EKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNPERVSMPDIDSDFCYERRG 409

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV  KYG + V+QI+TFG++  +A +RDVGRA+   Y++VDR+ K+IP      + 
Sbjct: 410  EVIDYVVEKYGKDNVSQIVTFGTMAPRACIRDVGRAMNYSYAEVDRIAKMIPTVLGITID 469

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+  +   RE    D  +  L+++++ LEGL RH STHAAG+VI  +PL   VP+ ++
Sbjct: 470  -KALEMNPELREVYDKDTRIKELIDVARDLEGLPRHTSTHAAGVVIASQPLVNYVPLSKN 528

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
               +  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ + +   +++DL  I F+D  
Sbjct: 529  --EEAIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDAIELIKKNTGIEIDLDKINFEDEN 586

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
             Y++L    T+G+FQLES+GM   ++ ++P+ +EDIIA +SLYRPGP+  I  Y   KN 
Sbjct: 587  VYNMLGKGKTVGVFQLESAGMTNFMKELKPESLEDIIAGISLYRPGPMAEIPKYIKNKNN 646

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             + I  I P ++ +L  T GV++YQEQVMQI + L+GYS+  +D++RRAM KK  + M++
Sbjct: 647  PKNIEYITPELEGILNVTYGVMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHKVMEE 706

Query: 728  QKERFIS-----------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            +++ FI            G  +NGIS+  A  I++ +  FA Y FNKSHAAAY V++Y T
Sbjct: 707  ERKNFIYGIEENGKVVVPGCLRNGISEESANKIYDQMMDFASYAFNKSHAAAYGVVAYYT 766

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++  +YP EF+AA +     N +K+  + + A+Q +I+ +PP +N     F V + +I 
Sbjct: 767  AYLVHYYPTEFMAAMLNSVRGNSDKVAIYIRAAKQMDIETLPPDINKSFGKFTVQNGKIR 826

Query: 837  YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            + L+AIK VG      I+++  +   F+S  DFC+++    +N+R++ESL+ AG  D FG
Sbjct: 827  FGLSAIKNVGENIIDVIVKSREEKGEFNSFVDFCNKISMGSINKRMVESLIKAGVFDSFG 886

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFEN 954
              R QLL   + I        K       ++F +    F   +I        N   +   
Sbjct: 887  IYRSQLLAVYEKIIDSVVSQRKKNIEGQVSLFGNFDNEFKGVEIKYPAIDEFNKKSKLAM 946

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV----------------------ATIRG 992
            E+ + G Y +GHPL+ Y+ IL+        + +                          G
Sbjct: 947  EKEMTGLYLTGHPLEDYEEILKNATSAKTTDIIMDESLEEDLVDEVTLHVEEQNSKIKDG 1006

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + + +  ++ +  +K T+  S + ++   +     E   FP
Sbjct: 1007 DKVIIGGLITNVTRKITKTNSMMAFINLEDLYSSIEVIIFP 1047


>gi|158423315|ref|YP_001524607.1| DNA polymerase III subunit alpha [Azorhizobium caulinodans ORS 571]
 gi|158330204|dbj|BAF87689.1| DNA polymerase III alpha subunit [Azorhizobium caulinodans ORS 571]
          Length = 1144

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 546/1030 (53%), Positives = 727/1030 (70%), Gaps = 11/1030 (1%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            + P FVHL VHSSYSLLEGAL+L  + D   AD QPA+A+TDT NLF ALEFS+K   AG
Sbjct: 2    RDPGFVHLHVHSSYSLLEGALTLGKLADFAKADAQPALALTDTGNLFGALEFSEKMYGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IQPI GC L +D+ + +      +   P  P IVLL +  +G++ L+ LVSR YL     
Sbjct: 62   IQPIAGCSLALDLPEPVAP----RGIVPKKPRIVLLAAREQGWRNLMTLVSRAYLETPDG 117

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            +  R+ L WL E+  +GLI LTGG +GP+D+A       VA  RL     ++GDRLYV L
Sbjct: 118  EEPRVTLDWLSEL-NDGLIALTGGPAGPLDKALVAGHGDVAASRLDQLTAIYGDRLYVEL 176

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRH    +R  E  ++ LAY   LPLVA N   F ++ DY AHD L+A+A S ++S+ DR
Sbjct: 177  QRHNWDPERIAEPGLLDLAYAKGLPLVAANEPFFGAQSDYNAHDALIAIAESKLLSEGDR 236

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R+TP+H  K R+EM+ +F+DLPEA  NTVEIA+RC++ ++   PILPRF      D   
Sbjct: 237  RRLTPEHRFKTRAEMLELFADLPEATANTVEIAQRCAYRVRTAKPILPRFTSGGGGDALA 296

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            EE  EL  +A  GL  RLA+   A+G   + Y +RL +E++VI +MKF GYFLIV+DFI+
Sbjct: 297  EEAAELERQAQEGLAARLAKHGPAEGLDTKIYEERLAYEISVITKMKFPGYFLIVSDFIK 356

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK ++IPVGPGRGSGAGS+ AY+L ITD+DPLRF LLFERFLNPDR+SMPDFD+DFCQD
Sbjct: 357  WAKAHDIPVGPGRGSGAGSLVAYSLQITDLDPLRFGLLFERFLNPDRVSMPDFDVDFCQD 416

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI YVQ +YG  +VAQIITFG+LQA+  LRDVGR L+MPY QVD+LCKL+P +PA+
Sbjct: 417  RREEVIDYVQKRYGRSQVAQIITFGTLQARGVLRDVGRVLEMPYGQVDKLCKLVPQNPAN 476

Query: 486  PVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            PV+  QAI ++ R +EAR  +  V +  +I+ +LEGL RHASTHAAGIVIGDRPL +LVP
Sbjct: 477  PVTLKQAIEEEPRLQEARDEEEVVKQAFDIAVRLEGLNRHASTHAAGIVIGDRPLHELVP 536

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            +YRD +SD+PVTQ+NMKW+E+AGL+KFDFLGLKTLT +  ++  + QRG+ +D+S IP D
Sbjct: 537  LYRDPKSDMPVTQYNMKWVEQAGLVKFDFLGLKTLTTITTAVKLIRQRGIDLDISKIPLD 596

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY +L    T+G+FQ+ES+GMR+AL  M+ D IED+IALV+LYRPGP+ NI VY + 
Sbjct: 597  DPKTYAMLARGETVGVFQVESAGMRRALVDMKADRIEDLIALVALYRPGPMANIPVYCDC 656

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+ +   IHP ++P LKET GVIIYQEQVMQIAQ LSGYSL EAD+LRRAMGKKI+ E
Sbjct: 657  KHGRAEPDYIHPKLEPYLKETFGVIIYQEQVMQIAQALSGYSLGEADLLRRAMGKKIRAE 716

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M+KQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA+++YQTAW+K +Y 
Sbjct: 717  MEKQRARFVDGAQERGVPKAQADTIFDLLAKFADYGFNKSHAAAYALVAYQTAWLKANYA 776

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EFLAASMTL+M N +K+ +F Q+A++  IQ++PP++N    DF V D +I Y++AAIKG
Sbjct: 777  TEFLAASMTLDMGNTDKLAEFRQEAQRLGIQVVPPNINLSHRDFAVVDGKIIYAMAAIKG 836

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG      ++ +   +PF  L DF +R   K LN+R LE+L  AG  D    +R ++  +
Sbjct: 837  VGGHAVDALVASRGKEPFTDLADFANRFPVKHLNKRTLENLAAAGCFDVLEKNRARVFAA 896

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            LD +  +AQ VE +R++   ++F    G    K+ L        + R + E   +GF+ +
Sbjct: 897  LDAVVAHAQRVEADRSSGQNDMFG--SGPVKAKLPLPDAQPWEPAERLKREYDTIGFFLT 954

Query: 965  GHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            GHPLD Y P L+KM ++ + +   A  +G    RLAA VVS+Q++KT+ G+R+G V  S+
Sbjct: 955  GHPLDDYAPALKKMRVQQFSDFSRAVRQGAAAGRLAATVVSRQERKTKTGNRMGIVGLSD 1014

Query: 1023 PAKEYEANFF 1032
            P+  +EA  F
Sbjct: 1015 PSGHFEAVLF 1024


>gi|225018880|ref|ZP_03708072.1| hypothetical protein CLOSTMETH_02830 [Clostridium methylpentosum DSM
            5476]
 gi|224948350|gb|EEG29559.1| hypothetical protein CLOSTMETH_02830 [Clostridium methylpentosum DSM
            5476]
          Length = 1155

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1032 (36%), Positives = 580/1032 (56%), Gaps = 28/1032 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ +SLL+GA  +  +        Q A+AITD  N+F  ++F     A GI+PI
Sbjct: 26   FVHLHLHTEFSLLDGACRIKELAAYAKKLGQDALAITDHGNMFGTIDFYSACKAEGIKPI 85

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +      ++  T       +VLL     GY+ LI+LVS  Y+ +      R
Sbjct: 86   IGCEVYVAPRTRFDKVHRIDTSPN---HLVLLCKNETGYRNLIKLVSAGYI-EGFYSRPR 141

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            I  + LQE  +EGLI L+   +G I RA        A++    ++   G D  ++ LQ H
Sbjct: 142  IDHNLLQE-HSEGLIALSACLAGEIPRALTAGDYGRAKQIAEFYRDTMGPDNYFIELQDH 200

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     Q+V+LA    + LVATN+  ++  ED +   VL+ +     + ++     
Sbjct: 201  GIKEQRAILPQLVKLAQQVGVGLVATNDVHYIRREDSKTQKVLLCIQTGKTLDEELAIEF 260

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + YLK+  EM S+F     A+ENT  IA RC+   +     LP F     +D +   
Sbjct: 261  PTQEFYLKSEEEMQSLFGSFEGAIENTARIAERCNLEFEFGVTKLPHFEPPNGEDNK--- 317

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
                      GL+    +              R  +E++VI  M F  Y+LIV DF+++A
Sbjct: 318  -EFFLRLCHDGLKKYYGEQPD------PKILDRFHYEIDVIDSMGFVDYYLIVYDFVRYA 370

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K++ IPVGPGRGSGAGS+ AY + IT IDP++++LLFERFLNP+R+SMPDFDIDFC +RR
Sbjct: 371  KEHGIPVGPGRGSGAGSIIAYCIGITGIDPIKYNLLFERFLNPERVSMPDFDIDFCYERR 430

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EV+ YV  KYG + VAQI+TFG+L A+ A+RDVGR + MPY  VD++ K +P  P   +
Sbjct: 431  PEVLDYVIRKYGADHVAQIVTFGTLAARGAIRDVGRVMGMPYDVVDKIAKQVPIHPGITI 490

Query: 488  SLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            ++ + +      +    +DP V  L++ ++KLEG+ R+ STHAAG+VI D+P++  VP+ 
Sbjct: 491  TIDSALKKSPELKAMADSDPQVRELIDTARKLEGMPRNTSTHAAGVVITDKPVTDYVPLS 550

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            ++   +  VTQ+ M  I   GL+K DFLGL+ LT++  +   + +   +  ++ IP DD 
Sbjct: 551  KN--DESIVTQYTMNTIADLGLLKMDFLGLRNLTVISDAERGVRRFEPEFAINKIPLDDK 608

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            ET+ +L+   + G+FQ ES+GMR+ L  M+PDC+ED+IA++SLYRPGP   I  +   + 
Sbjct: 609  ETFDMLSQGQSDGVFQFESAGMRKMLSRMKPDCLEDLIAVLSLYRPGPAQFIDAFIENRI 668

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E+I      +  +L  T GVI+YQEQVMQI + L+GYS   ADV+RRA+ KK    M+
Sbjct: 669  HPERITYRDERLRHILDVTYGVIVYQEQVMQIFRELAGYSYGRADVVRRAISKKKAGVME 728

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +++ +FI GA  NG+S+  A  IF  ++ FA Y FNKSHAAAY+++SYQTA++K HYP E
Sbjct: 729  QERIKFIEGAVANGLSERDAEAIFNDMSSFASYAFNKSHAAAYSLVSYQTAYLKCHYPRE 788

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            ++AA +   + + +K+  +  + R+ +IQ++PP +N   + F V D  I + L A+K VG
Sbjct: 789  YMAALLNSVIYSTDKVISYIGECRKQHIQVLPPDINRSQIGFTVSDGSIRFGLLAVKKVG 848

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I+E   A+  F+SL +F  R+ +++LN+  + + +  GA D F  +R Q+ +S 
Sbjct: 849  KGVIERIVEEREANGAFESLYNFVERMHNRELNKAAILAFIQCGAFDSFEENRRQMAESY 908

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            + I +     +++  N   N+F    GT  +K +  +     +      E++  G Y S 
Sbjct: 909  ERIVESVNSSKRSNINGQINLFETVTGT--EKFSYPELEEYTTDELMAMERQTTGLYISS 966

Query: 966  HPLDVYKPILRKMGIKGYEESVATI----RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            HPLD +   L+   I    E          G +  L A+V S ++ +T+ G+ + +    
Sbjct: 967  HPLDRFDKQLKGRRIDQISEIQQEESSYCDGAHAELGAIVASVKRIQTKGGALMAFAELE 1026

Query: 1022 EPAKEYEANFFP 1033
            +     EA  FP
Sbjct: 1027 DRTGSIEAVVFP 1038


>gi|313895480|ref|ZP_07829036.1| DNA polymerase III subunit alpha [Selenomonas sp. oral taxon 137 str.
            F0430]
 gi|312975606|gb|EFR41065.1| DNA polymerase III subunit alpha [Selenomonas sp. oral taxon 137 str.
            F0430]
          Length = 1130

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1032 (36%), Positives = 591/1032 (57%), Gaps = 26/1032 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YSLL+GA  +  ++ +       +IAITD   ++ A+ F ++A A GI P
Sbjct: 2    SFVHLHVHTEYSLLDGASRIKELVQRTKELGMDSIAITDHGVMYGAIAFYKEAMAQGIHP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  Q   +              ++LL     GY+ L+ LVS   + +      
Sbjct: 62   IIGCEVYVAPQSRHERAEVDGVR---YYHLILLAENEIGYRNLVRLVSLANI-EGYYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L++   EG+I L+   +G I R+      +  ++ L  +  +FG D  ++ LQ 
Sbjct: 118  RVDKDLLRQYH-EGIIALSACVAGEIPRSILRGDPERTDEILAEYVDIFGRDNFFLELQD 176

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +       +  L+  H++ LVATN+  ++  ED E HD+L+ V     ++  +R R
Sbjct: 177  HGLPEEKTVNHALRDLSKKHDIGLVATNDIHYVRAEDSEFHDILLCVQTGRTINDPNRMR 236

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + PD+YLK+ +EM ++F D P A+ENT +IA RC          LP +   E      +
Sbjct: 237  FSGPDYYLKSEAEMTALFHDYPGAVENTAKIAARCRVDFTFGELQLPFYPIPEKF---AD 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            ++  LR            +          + R RLD+EL VI  M ++ YFLIV DFI +
Sbjct: 294  DDAYLRTLCEE-------RLPERYSEITNEIRSRLDYELGVIHGMGYASYFLIVWDFINY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ + + VGPGRGS AGS+ AY L IT+IDPLR++LLFERFLNP+R+SMPD DIDF    
Sbjct: 347  ARGHGVAVGPGRGSAAGSIVAYLLGITNIDPLRYALLFERFLNPERVSMPDIDIDFDDIN 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R  VI YV+ +YG + VAQI TFG++ AK A+RDVGR L+M +S+V  + KL+P++    
Sbjct: 407  RGRVISYVKERYGEDHVAQIATFGTMGAKGAIRDVGRVLEMSFSEVSNITKLVPSELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ + + FR     D SV R++++++K+EGL R+ S HAAG+VI   PL+  VP++
Sbjct: 467  ID-RALKESADFRRLYDEDESVRRVIDLARKIEGLPRNTSIHAAGVVIAKEPLTNHVPVW 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
              +     VT+F+   +E  GL+K DFLGL+TL++++ +L  +    G+ +D+  IP +D
Sbjct: 526  --ISEGTLVTEFDKDDVEALGLLKMDFLGLRTLSIIEDALKNIRTSHGIDIDIDNIPLED 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
              T  +L    T  +FQ+ES+GM   ++ +QP    D+I  V+LYRPGP+ + +   + +
Sbjct: 584  DLTAQMLCDGDTGAVFQMESAGMTNLVKDLQPKGFVDLIPTVALYRPGPLGSGMVTDFID 643

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
              +GK+++V +HPL++P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK   
Sbjct: 644  GLHGKKEVVYMHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGKKKHA 703

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  QKE F++G + NGI   +A +IF+LL  FADYGFNKSH+A+Y ++++QTA++K HY
Sbjct: 704  LLMAQKESFLAGCANNGIDAPLANHIFDLLTHFADYGFNKSHSASYGLLAWQTAYLKAHY 763

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF+A  +T  MD  +KI  + +   Q  I+I+PP +N+    F +    I + LAA++
Sbjct: 764  PVEFMAGVLTSIMDKTDKIPVYIRLCHQMKIRILPPDINSSAATFSIESGAIRFGLAAVR 823

Query: 844  GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      +     +  PF SL DFC+RVD + LN+R +ESL+  GA D  G  R  LL
Sbjct: 824  NVGENAIAVLEHVREEGGPFRSLVDFCTRVDLRTLNKRAIESLIKCGAFDSLGIDRNHLL 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENEQRVLGF 961
             SL+     A   +++  +    +F  +      +I   +   +     R   E+   GF
Sbjct: 884  ASLNAAVTDAARRQRDLLSGQIGLFGDDAMAEVQQIGDFDDVPLCTPRERLTWEKEATGF 943

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y +GHPL+ Y+  L  +   G   +        +R+  ++ S ++  T+KG  + +    
Sbjct: 944  YITGHPLEDYQETLSHLQPIGQIAAAVQRDRQLMRVGGILTSTKRFTTKKGDTMLFADLE 1003

Query: 1022 EPAKEYEANFFP 1033
            +     E   FP
Sbjct: 1004 DFTGTLEVTVFP 1015


>gi|124514840|gb|EAY56352.1| DNA polymerase III, alpha subunit [Leptospirillum rubarum]
          Length = 1201

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1045 (39%), Positives = 610/1045 (58%), Gaps = 21/1045 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL VH+ YSLL+GA  ++ ++ K  A+  PAIA+TD  NLF A+EF Q A  
Sbjct: 1    MSSTDQFVHLHVHTQYSLLDGANKIDPLIRKARAENMPAIAMTDHGNLFGAIEFFQTAKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKM---------TNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
             G++PIIGC++ I  +               +Q K        ++LL     GY+ L+++
Sbjct: 61   HGVKPIIGCEVYITPRSRFDRQDLYFGGDGPHQAKKINNASFHLILLAENDTGYRNLLKI 120

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  +L +      RI L  L     EGLI L+G   G I        +  A      F+
Sbjct: 121  VSLSHL-EGFYYRPRIDLELLSR-HHEGLIALSGCLKGQISYMLTRGDTDRAYATAGLFR 178

Query: 176  KLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            ++FG +  +  +Q +   D+     +++ L+    +PLVATN+  +L  ED   HD+L+ 
Sbjct: 179  EIFGPENYFFEVQANGLEDQRIANREIIGLSKKLSIPLVATNDCHYLEREDSVPHDILLC 238

Query: 234  VAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            +     +    R R  + + YLK   EMV  F +LPEA+ENT+ IA R    + +    +
Sbjct: 239  LQTGKTLEDPARLRFGSDEFYLKTPREMVRSFEELPEAIENTLRIADRIDVSIDLQTTHM 298

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P +   E               +  GL+ R  +   +    A  Y +RL+ E+ VI +M 
Sbjct: 299  PSYRLDENQGQTTTVPELFVRTSREGLDARFQENTFSDTEKA-LYLERLEREIQVIQKMG 357

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            + GYFLIV DFI+ A++  IPVGPGRGS AGSV A++L IT+IDP+RF LLFERFLNP+R
Sbjct: 358  YEGYFLIVWDFIRKAREMGIPVGPGRGSAAGSVVAWSLRITNIDPIRFGLLFERFLNPER 417

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +S+PD D+DFC +RR EVI+YV ++YG +RVA I TFG++ AK ++RDVGR L M Y++V
Sbjct: 418  VSLPDIDVDFCMNRRGEVIQYVVDRYGMDRVAMIATFGTMGAKGSIRDVGRVLGMTYAEV 477

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            DR+ K+IPN     +    + ++   R     DP ++ L  +S+KLEG+ RH+S HAAG+
Sbjct: 478  DRVAKMIPNSLDMTLEKA-LEENPDLRALLEKDPRMEELFSLSRKLEGITRHSSIHAAGV 536

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            VI   PL + VP+ R   +   VTQF    +EK GL+KFDFLGL TLTL+Q + + +   
Sbjct: 537  VISREPLLEHVPLMRGA-NGEIVTQFTKDDVEKVGLVKFDFLGLTTLTLIQGAENRIQAH 595

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                    IP DD  TY LL+   TLGIFQLES GM   +  MQP+  ED+IAL++LYRP
Sbjct: 596  TPDFSADRIPLDDARTYRLLSEGKTLGIFQLESRGMTDLIMKMQPETFEDLIALLALYRP 655

Query: 653  GPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GPI++ +   +  RK    +I    P ++P+L+ET GVI+YQEQVMQIA +L+G+SL EA
Sbjct: 656  GPINSGMVDDFIKRKKNPREIRYELPELEPVLRETYGVIVYQEQVMQIANVLAGFSLGEA 715

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM K +++F+ GA + G  K  A ++FEL+A FA YGFNKSH+AAYA
Sbjct: 716  DLLRRAMGKKKPEEMAKMQDKFVDGAIRKGFPKEKATHVFELMAYFAGYGFNKSHSAAYA 775

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +ISYQTA++K HYP+E  AA +T  +D+ EKI  F   A+   I+++ P +N    DF +
Sbjct: 776  LISYQTAYLKAHYPLELWAALLTNALDDTEKIGVFLAGAKDMGIEVLAPDINQSEFDFAI 835

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
               +RI + L A+K VG      I+EA A+  PF    DF  R+  KK+NRRV+E+L+ A
Sbjct: 836  LPGSRILFGLGAVKNVGKQAVDCILEARANDGPFVDFPDFLKRIVGKKVNRRVIEALIRA 895

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA    G  R   ++SLD++  +A+  +  + +  +++F+ ++G  S    L +    + 
Sbjct: 896  GAFRSLGIRRSVAMESLDDLLAWAEKQKSGKGSLQKSLFSEDQGGRSSGPPLREVPEWDE 955

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             +    E+  LGFY + HP+  Y  +L K+  +      +   G  +R+ A+V + ++ K
Sbjct: 956  RMLLREEKNALGFYLTSHPMARYADLLLKLDTRSTRSLESVSEGETVRVFAVVSALREVK 1015

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            T+KG ++  +T  +     EA  FP
Sbjct: 1016 TKKGDKMAQLTLLDMEGTIEAVLFP 1040


>gi|300853524|ref|YP_003778508.1| DNA polymerase III subunit alpha [Clostridium ljungdahlii DSM 13528]
 gi|300433639|gb|ADK13406.1| DNA polymerase III, alpha subunit [Clostridium ljungdahlii DSM 13528]
          Length = 1158

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1059 (36%), Positives = 594/1059 (56%), Gaps = 50/1059 (4%)

Query: 5    LEK-SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            ++K    +V L  H+ YSLL+ +  +  ++ +       ++AITD   ++  +EF ++A 
Sbjct: 1    MDKGKHRWVSLHQHTEYSLLDSSAKIPELIARAKELGMDSMAITDHGVMYGCVEFYKEAR 60

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            A GI+PIIGC++ +   D     N GK        +VLLV   EGYQ L+++VS   +  
Sbjct: 61   AQGIKPIIGCEIYVSQGDMTIKQNNGKN---ENYHLVLLVKNEEGYQNLMKIVSTASIKG 117

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  R+  ++L +  +EGLI L+   SG +       +   AE+  L +K  F D  Y
Sbjct: 118  -FYYKPRVDHNYL-KNHSEGLIALSACMSGEVQSNILKGNIDKAEETALFYKSAFKDGFY 175

Query: 184  VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H    +     Q++ ++    +PLVATN+  ++ +EDY AHD+L+ +     V +
Sbjct: 176  LEIQYHGIEAQLKINEQLISMSKKLNIPLVATNDVHYIKKEDYRAHDILLCIQTGKTVDE 235

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            ++R R  + + YLK+  EM  +FS++PE+LENT++IA +C+F  + H   LP+F   E  
Sbjct: 236  ENRMRYPSDEFYLKSPDEMYDMFSNVPESLENTIKIADQCNFDYEFHKSKLPKFPLPEDT 295

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D        +++    GL                + + RL++EL +I +M +  YFLIV 
Sbjct: 296  DPY----EYMKDLCYKGLYK-------RYNDVTDELKSRLEYELGIIKKMGYVDYFLIVW 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++A+KN I  GPGRGSGAGS+ AY L IT IDP+++ L+FERFLNP+R+SMPD D D
Sbjct: 345  DFIRFARKNGIMTGPGRGSGAGSIVAYTLEITKIDPIKYKLIFERFLNPERVSMPDIDSD 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RR EVI YV  KYG + V+QIITFG++ AK  +RDVGRA+   Y +VDR+ K+IP+
Sbjct: 405  FCYERRGEVIDYVVEKYGKDSVSQIITFGTMAAKMCIRDVGRAMNYSYGEVDRIAKMIPS 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P   +  +A+  +  F+EA  ++     L++I++ LEGL RH STHAAG+VI   PL  
Sbjct: 465  IPNITID-KALDMNPEFKEAYDSESRTKELIDIARALEGLPRHTSTHAAGVVIASEPLVN 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
             VP+ ++   D  VTQF M  +E+ GL+K DFLGL+TLT+L+ +++ + + +G+++DL  
Sbjct: 524  YVPLQKN--EDNIVTQFTMNTLEELGLLKMDFLGLRTLTVLRDAVEMIKEDKGIEIDLDT 581

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            I +DD   Y+++    T+G+FQLES G    ++ ++PD +EDIIA +SLYRPGP+  I  
Sbjct: 582  IDYDDKAVYNMIGEGKTVGVFQLESPGFSSFMKELKPDSLEDIIAGISLYRPGPMSEIPK 641

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y   KN  E I  + P ++ +L  T G ++YQEQVMQI + L+GYS+  +D++RRAM KK
Sbjct: 642  YIKNKNNPEGIEYVTPQLEHILSVTYGCMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKK 701

Query: 721  IKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
                M++++  F+             G  +NGIS+ IA +IF+ +  FA Y FNKSHAAA
Sbjct: 702  KHHVMEEERHNFVYGIVDEKGEIQVPGCVRNGISEKIANDIFDSMMDFASYAFNKSHAAA 761

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YAV++++TA++  +YP EF AA +     + EK+  + + A+   I+IMPPS+N  C  F
Sbjct: 762  YAVVAFRTAYLMYYYPTEFTAAMLNSVKGDSEKVAYYIRFAKSIGIEIMPPSINESCTKF 821

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V D  I + L+AIK VG      I+ +      F  + DFC+ +D   +N+RV+ESL+ 
Sbjct: 822  TVEDGNIRFGLSAIKNVGENVIDSIVRSRSKHGKFKDIVDFCNSIDLDSINKRVVESLIK 881

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGA DCFG  R QL+   + +        K       ++F+  + + S +I         
Sbjct: 882  AGAFDCFGVLRSQLIAVHEKVIDSVINSRKKNIEGQVSLFSQIEDS-SVRIKYPSIEEFK 940

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-------------RGNN 994
                   E+ + G Y SGHPLD Y   L         + V                 G+ 
Sbjct: 941  KLDMLAMEKEMTGLYLSGHPLDEYARTLELQADTKISDIVGRKTLEDNFVEEAKVNDGDR 1000

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +  ++    +K T+    + +    +     E   FP
Sbjct: 1001 VIVGGILSEVSKKITKNNDMMAFAKLEDLYGIMEIIVFP 1039


>gi|160878493|ref|YP_001557461.1| DNA polymerase III DnaE [Clostridium phytofermentans ISDg]
 gi|160427159|gb|ABX40722.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans ISDg]
          Length = 1186

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1077 (34%), Positives = 586/1077 (54%), Gaps = 66/1077 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ +SLL+G+  +  +  +       A+AITD   ++  ++F +   A GI+P
Sbjct: 2    SFTHLHVHTEFSLLDGSGKIKEMAAQAKKLGMDALAITDHGVMYGVIDFYRACLAEGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +          +G         +VLL     GY  LI++VSR +  +      
Sbjct: 62   IIGCEVYVAPNSRFDK--EGSASEERYHHLVLLAENDIGYHNLIKIVSRGFT-EGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L+E  +EG+I L+   +G +      N  + A+   L  +++FG    ++ LQ 
Sbjct: 119  RVDHELLKEY-SEGIIALSACLAGEVAVMLRRNFFEEAKASALKLQEIFGAGNFFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++      +++++    +PLVATN+  +  + D  AHD+L+ +     V+ +DR R
Sbjct: 178  HGYPEQKSVNQGLLRISEETNIPLVATNDIHYTYDTDETAHDILLCIQTQKKVTDEDRMR 237

Query: 248  VTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +      EM  +F    +AL+NT EIA+RC+  ++     LP++       +   
Sbjct: 238  YAGGQFYMKSPEEMRELFPYALQALQNTEEIAKRCNVTIEFGHYKLPKYDVPAPYTVSPG 297

Query: 307  -----------------------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                                       LR     GL  R           + +   RL++
Sbjct: 298  SGSTDDEGDISASQNISTNTDILAREYLRKLCEEGLVRRYKD-------PSTELWDRLNY 350

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL  I  M F  YFLIV DFI++AK N+I VGPGRGS AGSV +Y L IT+IDP+++SLL
Sbjct: 351  ELETIENMGFVDYFLIVWDFIKYAKDNDIIVGPGRGSAAGSVVSYCLEITNIDPIKYSLL 410

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+R++MPD DIDFC +RR EVI YV +KYG +RV QI+TFG++ A+A +RDVGR
Sbjct: 411  FERFLNPERLTMPDIDIDFCFERRQEVIDYVVSKYGKDRVVQIVTFGTMAARAVIRDVGR 470

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            AL MPY+ VD + K+IP +    +  +A+  +   ++   +DP V  L+++S++LEGL R
Sbjct: 471  ALDMPYASVDVVAKMIPTELGITIE-KALNINPDLKKLYESDPEVMHLIDMSKRLEGLPR 529

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
            H S HAAG+VI + P  + VP+ R    D   TQF M  +E+ GL+K DFLGL+TLT++Q
Sbjct: 530  HTSMHAAGVVISNAPADEYVPLSRSS-DDSITTQFTMTTLEELGLLKMDFLGLRTLTVIQ 588

Query: 584  KSLDFLAQ--------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
             ++  + Q            +++  I ++D +   L+++  T GIFQLESSGM+  ++ +
Sbjct: 589  NAVLLVNQAKARLGETEENFLNIDEIDYNDSKVLDLISSAKTEGIFQLESSGMKSFMKEL 648

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
            +P  +EDIIA +SLYRPGP+D I  Y   KN ++ I      ++P+L  T G I+YQEQV
Sbjct: 649  KPQNLEDIIAGISLYRPGPMDFIPKYIQGKNNQKSIQYECKELEPILSPTYGCIVYQEQV 708

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAV 747
            MQI + L+GYS   +D++RRAM KK    M+K+++ F+         G    GI + +A 
Sbjct: 709  MQIVRELAGYSFGRSDLVRRAMSKKKASVMEKERQSFVYGNVEEGVPGCISKGIPEAVAN 768

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
            +I++ +  FA Y FNKSHAAAYAV+SYQTA++K +YPVEF+AA MT  +DN  K+ ++  
Sbjct: 769  HIYDEMTDFAKYAFNKSHAAAYAVVSYQTAYLKCYYPVEFMAALMTSVIDNPSKVAEYIY 828

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLE 866
              RQ  I+++PP +N     F V    I Y L+AIKG+G      ++ E   + P+ +L+
Sbjct: 829  TCRQMGIKLLPPDINDGYATFTVSGENIRYGLSAIKGLGRPVIDALVIEREENGPYLNLK 888

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF SR+  K++N+R +ES + +GA D    +R QL+     +       +K       ++
Sbjct: 889  DFASRLSGKEVNKRTIESFIKSGAFDSMPGTRKQLMHVYVGVLDGVSQEKKRAMTGQMSL 948

Query: 927  FAHEKGT--FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            F  +      +++I   +    +       E+ VLG Y SGHPL+ Y+ +L++       
Sbjct: 949  FDLDGDAKVMNEEIIFPEVGEYSKEELLAFEKEVLGIYVSGHPLEAYELLLKRNATANTA 1008

Query: 985  ESV--------ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +            G+ + +  M+ S+  K TR  + + ++T  +     E   FP
Sbjct: 1009 DFIVEEETNTVKVADGDTVTVGGMITSRTLKTTRTNAVMAFITLEDMFGTMEVIIFP 1065


>gi|116748665|ref|YP_845352.1| DNA polymerase III subunit alpha [Syntrophobacter fumaroxidans MPOB]
 gi|116697729|gb|ABK16917.1| DNA polymerase III, alpha subunit [Syntrophobacter fumaroxidans MPOB]
          Length = 1164

 Score =  807 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1039 (40%), Positives = 610/1039 (58%), Gaps = 24/1039 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL VH+ YSLL+GA+ L ++++   + + PA+ +TD  N+F ALEF +KA AAGI+P
Sbjct: 3    AFVHLHVHTQYSLLDGAIRLTDLIETARSMEMPAVTMTDHGNMFGALEFYEKAKAAGIRP 62

Query: 70   IIGCQLDIDMQDNLKMTNQ----GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            IIGC++ +  +       +    G         +VLL   A GYQ L++LVS  YL +  
Sbjct: 63   IIGCEVYLAPRSRHDRHGRAEGSGTGEEDRNYHLVLLAKDATGYQNLMKLVSAGYL-EGF 121

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184
                RI    L +   EGLI L+    G +      N    A      +  + G D  Y+
Sbjct: 122  YYKPRIDKEILLQ-HHEGLIGLSSCLKGEVATLLSRNQESAARDAAREYAGILGPDHFYL 180

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQ +   ++     +++ +     LPLVATN+  +L + D  AH++L+ +     V  +
Sbjct: 181  ELQANGMPEQAKVNERLIVMGKELGLPLVATNDCHYLRKSDARAHEILLCIQTGKTVLDE 240

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R +  T   Y K+  EM   F+ +PEALEN+V IA RC   L++              D
Sbjct: 241  KRMKFQTDQLYFKSPEEMAREFAHVPEALENSVAIAERCRLELKLGDY----HFPVFPLD 296

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ----DYRQRLDFELNVIARMKFSGYFL 358
              +  E++    A+ G   RL +    +   ++    +Y +RL  EL VI  M F+ YFL
Sbjct: 297  EGESVEDKFEKTALEGFRRRLRELEKRRSGFSEQDRGEYEERLRSELAVIREMGFAAYFL 356

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI +AK + IPVGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+R+SMPD 
Sbjct: 357  IVGDFINYAKSHGIPVGPGRGSAAGSLVAYAMNITDLDPIEHGLIFERFLNPERISMPDI 416

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC   R+EV  YV  KYG  RVAQI TFG++QA+A +RDVGRAL MPY++VDR+ KL
Sbjct: 417  DVDFCIRGREEVFNYVSEKYGKNRVAQITTFGTMQARAVIRDVGRALAMPYNEVDRIAKL 476

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP+     +  +A   + R  E +  DP +  L EI+  LEGL RHASTHAAG+V+ DRP
Sbjct: 477  IPSSLGMTLE-KAFQAEPRLAEQQREDPQIRELFEIAFALEGLTRHASTHAAGVVMADRP 535

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVD 597
            + + +P+Y   +    VTQ+ MK++E+AGLIKFDFLGL+ LT++  ++  + +    ++D
Sbjct: 536  IVEYMPLYLG-QDGEVVTQYPMKYVERAGLIKFDFLGLRNLTVIDDAVRLIRETHGLELD 594

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  +P DD +TY LL+   T G+FQLESSGMR  L  ++P+   DI+ALV+LYRPGP+++
Sbjct: 595  MLALPLDDRDTYALLSRADTTGVFQLESSGMRNILARLKPENFADIVALVALYRPGPLES 654

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  Y   K+G+ +I     ++ P+L+ T GVI+YQEQVM+IA +++ Y+L EADVLRR
Sbjct: 655  GMVELYIQGKHGQIEITYDPEILRPILEPTYGVILYQEQVMKIASVMASYTLGEADVLRR 714

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  E M  Q+ RF+ G+ KNGI    A +IF+L+ KFA YGFNKSH+AAYA+++YQ
Sbjct: 715  AMGKKNAEAMRDQRARFVEGSRKNGIPLAKANHIFDLMEKFAGYGFNKSHSAAYALVAYQ 774

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++KTHY VEF+AA +   + + +++ +   + R+  I I+PP VN    DF V   +I
Sbjct: 775  TAYLKTHYLVEFMAALLNSFLSSSDQVVRLISECREKGIDILPPDVNASSRDFTVVGGKI 834

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L A+K VG      I+       PF S+ DFC RVD++++NRRVLE LV  GA D  
Sbjct: 835  RFGLGAVKNVGEAAIEVILNTRVERGPFKSIHDFCLRVDTQRVNRRVLEQLVKCGAFDSI 894

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-TFSDKITLEKFSVENSSVRFE 953
               R  ++ +LD+    AQ V+++R +   N+F   K  T +    L +    +     +
Sbjct: 895  HSCRAGVMAALDDALDKAQAVQRDRQSGQINMFDLLKPRTKAGASALPEVPEWDGRQTLQ 954

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+  LGFY SGHPLD Y   + ++     +       G  + L  M+   ++  T+KG 
Sbjct: 955  FEKEALGFYISGHPLDSYAAQISQLCTADTQAVKERKEGAEVILCGMISIVKELTTKKGD 1014

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            R+ ++   +     E   F
Sbjct: 1015 RMAFLAIEDKEGVLEVVAF 1033


>gi|212704482|ref|ZP_03312610.1| hypothetical protein DESPIG_02538 [Desulfovibrio piger ATCC 29098]
 gi|212672049|gb|EEB32532.1| hypothetical protein DESPIG_02538 [Desulfovibrio piger ATCC 29098]
          Length = 1157

 Score =  807 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1038 (40%), Positives = 614/1038 (59%), Gaps = 25/1038 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              FVHL  H+ YSLL+GA+ + ++  +      PA AITD  NLF A +F       GI+
Sbjct: 2    SDFVHLHCHTEYSLLDGAIRVKDLCSRAKDFGMPACAITDHGNLFGAAKFFLTCKDFGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC++ +      K +   +        ++LL    EGY  L++LVSR YL +     
Sbjct: 62   PIIGCEVYVCHDHLDKTSELARKRN----HLILLSENIEGYHNLVKLVSRSYL-EGFHYK 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+  + L++  +EGLI L+   +G I RA        A      +  ++ DR Y+ LQ 
Sbjct: 117  PRVDKAMLRQY-SEGLICLSACIAGEIPRALNAGDMDGAIALAREYADIYPDRFYLELQS 175

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++      ++++A   +LP+VATN+  +L+ +D +AH+VL+ +   T +    R R
Sbjct: 176  NSLPEQEIANKGLLEIADHLKLPIVATNDCHYLNADDADAHEVLLCIQTQTTMDDPKRMR 235

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T D Y K+  EM ++F  LP++L NT EIA RC+  L +     P +   E   +   
Sbjct: 236  FGTHDLYYKSGEEMEAVFGHLPQSLSNTAEIAERCNVELDMGHHYFPVYKLPEGASL--- 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++E R  A  GLE RL +       + Q YR RL +EL VI  M F GYFLIV +FI W
Sbjct: 293  -DSEFRRLAEEGLERRLEKHPNRANINPQAYRDRLQYELKVILEMGFPGYFLIVQEFINW 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + IPVGPGRGS AGS+ A++L IT++DPL ++LLFERFLN +R+S+PD D+DFC+ R
Sbjct: 352  AKDHGIPVGPGRGSAAGSLVAWSLRITNLDPLPYNLLFERFLNAERVSLPDIDVDFCERR 411

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI+++ + YG + VAQI TFG+++AK  +RDVGRAL M +++ DR+ KL+P+D    
Sbjct: 412  RTEVIQHMVDTYGKDSVAQITTFGTMKAKGVVRDVGRALGMSFAETDRIAKLVPDDLKMT 471

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   +     DP V +LL+ +++LEGL RHASTHAAG+V+  RP+ + +P+Y
Sbjct: 472  I-NKALEAEPDLQNLYDTDPQVKKLLDTARRLEGLSRHASTHAAGLVVSPRPMDEFLPLY 530

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDD 605
               R +  VTQF+    EK+GL+KFDFLGLKT+TL+Q +LD    Q     DL  +P  D
Sbjct: 531  TGKRGE-LVTQFDGPMTEKSGLVKFDFLGLKTMTLIQDTLDNITLQGKTPPDLDNLPLTD 589

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
              TY L     T GIFQ+ESSGMRQ L  ++P C ED+IA+++LYRPGP+ + +V  +  
Sbjct: 590  AATYDLYARGDTDGIFQVESSGMRQYLRMLKPSCFEDVIAMLALYRPGPLGSGMVDEFIK 649

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+  +V  H  +   L++T GVI+YQEQVMQIAQ+++ Y+L  AD+LRRAMGKK  E
Sbjct: 650  RKHGQVPVVYPHESLSDCLRDTYGVIVYQEQVMQIAQIIASYTLGGADLLRRAMGKKKPE 709

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M K++ +F+ GA KNG+ K  A  IF+L+ KFA+YGFNKSH+AAYA ISY TA++K H+
Sbjct: 710  AMAKERVKFVEGAQKNGVDKAKADEIFDLMEKFAEYGFNKSHSAAYAQISYFTAYLKVHH 769

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
             VEF+AA +T EM N EK+ K+    +   I ++ PSVN     F   + ++ + L  IK
Sbjct: 770  TVEFMAALLTSEMSNQEKLLKYISCCKDMGIDVVQPSVNASQRSFSAREGKVVFGLGGIK 829

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
             VG +    IM+A  D  + SL D C RVD +K+ +RVLE+L+  GA DCFG SR  LL 
Sbjct: 830  NVGDSAITEIMDARKDGEYVSLFDMCCRVDLRKVTKRVLEALIKGGACDCFGVSRAALLA 889

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-------KITLEKFSVENSSVRFENEQ 956
            +LD +   AQ   K + +   ++ A      +                  +   R +NE+
Sbjct: 890  ALDTVVTRAQKKAKEKNSNQISLLAMAPQVEAKPQPGIGFDCPESGIPEMDEDQRLKNEK 949

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRI 1015
              LGF+ + HPL  +   +R++ +   E++        +  A +VVS ++  T+ KG R+
Sbjct: 950  EALGFFLTSHPLQPFSREMRRLRLTTLEDARDLYPKAELSTAVLVVSLKEVITKSKGERM 1009

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +V   +     E  FFP
Sbjct: 1010 AFVGVEDLTGHAEVTFFP 1027


>gi|320354498|ref|YP_004195837.1| DNA polymerase III subunit alpha [Desulfobulbus propionicus DSM 2032]
 gi|320123000|gb|ADW18546.1| DNA polymerase III, alpha subunit [Desulfobulbus propionicus DSM
            2032]
          Length = 1173

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1044 (40%), Positives = 618/1044 (59%), Gaps = 30/1044 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YS+L+GA+ +++++D        A+A+TD   ++ ALEF +KA  
Sbjct: 1    MPTP--FIHLHVHSQYSMLDGAIRVSDLIDTAKEFGMEAVALTDHGAMYGALEFYEKAKK 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+P++GC+  +                     +V L     GY  L++L S       
Sbjct: 59   AGIKPLVGCEFYLAENG----MEIHDRSAGHNFHLVALAMNEAGYGNLMKLASLAQTK-G 113

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L     EGLI+LT    G I      N    A  R L  +K+FGDRLY+
Sbjct: 114  FYYRPRIDRQTLYA-HQEGLIVLTACLKGEIPWRLTHNDENRARARALELQKVFGDRLYL 172

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +Q +   ++      ++ LA    + LVATN+  +L++E+  AH+VL+ +     ++  
Sbjct: 173  EIQENGLPEQTIANQGLMALAKDLNIKLVATNDCHYLTKEESYAHEVLLCIQTGKTINDP 232

Query: 244  DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +R R   +  Y K+  EM + F+  PEA+ NT+E+A RC+  L       P F  KE   
Sbjct: 233  NRFRFNTNELYFKSGDEMAAQFAYCPEAISNTLEVAERCNLELSFKEHFFPIFPIKE--- 289

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              +  E         G +     + +         + YR RL++E++VI  M F+GYFLI
Sbjct: 290  -NETLETVFSQACWDGFQQRLDHMREMGPVSAETEKTYRDRLEYEIDVIQEMGFAGYFLI 348

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAKK  IPVGPGRGSGAGS+ AY + ITDIDP+ + LLFERFLN +R+SMPDFD
Sbjct: 349  VADFINWAKKQKIPVGPGRGSGAGSLAAYCMAITDIDPIPYGLLFERFLNVERVSMPDFD 408

Query: 420  IDFCQDRRDEVIRYVQNKY-GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            +DFC++RRDEVI YV+ +Y G + VAQI+ +GS++A+A LRDVGR L +P   VDR+ KL
Sbjct: 409  VDFCKERRDEVIDYVRQRYGGDDYVAQIVAYGSMKARAVLRDVGRVLDIPLPVVDRIAKL 468

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            +P +    +  +AI  + R REA   D  V  LL I+Q LEGL RH STHAAG+VI  +P
Sbjct: 469  VPEELKITLK-KAIEKEPRLREAMKDDE-VRELLTIAQTLEGLARHKSTHAAGVVISPKP 526

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597
            + + +P+     +   +TQ++MK+ EK GLIKFDFLGLKTLT++ ++L  +A     +VD
Sbjct: 527  MVEYLPV-CIGPNKEILTQYDMKYTEKTGLIKFDFLGLKTLTVIDRALKLIAYDVGKEVD 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  IP DD +TY+LL    +LG+FQLES GMR+ L  MQP+   D+IALV+LYRPGP+D+
Sbjct: 586  LRKIPMDDPKTYNLLCRGDSLGVFQLESDGMRELLIKMQPEQFTDLIALVALYRPGPLDS 645

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V  +   K+G+       P I  +L+ET GVI+YQEQVM+I+ +L+GYSL +AD+LRR
Sbjct: 646  GMVDTFVETKHGRRPADYPLPQIKSVLQETYGVIVYQEQVMKISNILAGYSLGDADILRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKKI E M+K++ +F++GA  N I +  A  IF+L+AKFA YGFNKSH+AAYA+++YQ
Sbjct: 706  AMGKKIPEVMEKERGKFMAGAKVNNIPEDKATYIFDLMAKFAGYGFNKSHSAAYALVAYQ 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYP +FLAA ++ + DN +K+ K+  + RQ  I+++PP +N    DF V ++R+
Sbjct: 766  TAYLKAHYPAQFLAALLSCDYDNTDKVVKYINECRQNKIEVLPPDINESFNDFTVINDRV 825

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + LAA+K VG      I+    A  P+ SL DFCSRVDS K+NR+V+ESL+ AGA D  
Sbjct: 826  RFGLAAVKNVGGAALDSILAEREAGGPYRSLSDFCSRVDSSKVNRKVIESLIKAGAFDSM 885

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFSDKITLE-KFSVENSS 949
               R Q +  LD     A+  +++R +   N+FA      K   + ++ L          
Sbjct: 886  SGRRAQYMAMLDQCLDRAKAAQRDRMSGQMNLFAIGQPASKQAEATEVELPADVEEWPEL 945

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
             R   E+  +GF+ +GHPL+     LR+              G  +R+  ++ S ++ K+
Sbjct: 946  ERLAAEKETVGFFLTGHPLEGVMEDLRRAVDTDIAGVEKLREGQAVRIGGLIASYKEHKS 1005

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
            +KG R+ + T  + +   E   FP
Sbjct: 1006 KKGDRMAFTTLEDMSASIEVIVFP 1029


>gi|226310964|ref|YP_002770858.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
 gi|226093912|dbj|BAH42354.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
          Length = 1142

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1029 (37%), Positives = 605/1029 (58%), Gaps = 24/1029 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YSLL+GA  ++ ++ + +     A+A+TD  NL+ A+ F +    AGI+P
Sbjct: 3    SFVHLHVHTEYSLLDGAARIDTLVKRASELGMHALAMTDHANLYGAIPFYKACLEAGIRP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +   +            P    +++L     GY+ L+ L +            
Sbjct: 63   IIGMELYVIEGNLQDRVRNA----PPPSHLIVLAENETGYRNLLRLATIANTDGN-YILP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+    L +  T+GLI L+G   G + +      +  A++  L ++++FG+   Y+ L  
Sbjct: 118  RLNKEVLAK-HTDGLIALSGCQQGEVAKLLLAGEADTAKEAALRYQRMFGEQHFYLELAD 176

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +R   +++V+L+    +PL+ATNN  ++  ED++ HD+L+A+     + +++R R
Sbjct: 177  HGLEVERRLNTRLVKLSQETGIPLIATNNVHYIHREDHQQHDILLAIKEGKTIGEENRFR 236

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T  +YLK+  EM ++F+  P+AL NTV +A RC   L   A ILP F   E  D    
Sbjct: 237  YETDQYYLKSAEEMAALFAFAPQALANTVAVADRCKLDLTFGAHILPEFPLAEGQD---- 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     G            G    + + RLD EL +I    F+ YFLIV DF+++
Sbjct: 293  STQYLRELCEKGCLE-------RYGEITPEAQARLDHELAIITGTGFTDYFLIVWDFMRY 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +N IP GPGRGS AGS+ AY L IT++DPLRF LLFERFLNP+R++MPD DIDF  +R
Sbjct: 346  AHENGIPTGPGRGSAAGSLVAYVLKITNVDPLRFQLLFERFLNPERVTMPDIDIDFSVER 405

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYGH+RVAQIITFG++ A+AA+RDVGRAL +    VDR+ K+IP  P   
Sbjct: 406  RDEVIHYVASKYGHDRVAQIITFGTMAARAAVRDVGRALGLSLGIVDRVAKMIPQSPGMT 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +    +  +    +    +    +L+E ++ +EGL RHASTHAAG+VI   PL+  VP+ 
Sbjct: 466  IERA-MQINPDIGKLCAENKQAAQLIETARGVEGLPRHASTHAAGVVISREPLTNYVPLQ 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                  L +TQ+ M+ +E+ GL+K DFLGL+ LT++Q++L  L ++G+ +DL  +P DD 
Sbjct: 525  TG-NEGLALTQYPMEILEEVGLLKMDFLGLRNLTIIQETLRHLQEQGISLDLDKLPTDDE 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T+ +L+   T GIFQLESSGMR  L  ++P  ++DIIA+++LYRPGP++ I  Y   K+
Sbjct: 584  KTFRMLSRGETTGIFQLESSGMRNVLRDLKPSSLDDIIAVLALYRPGPMEIIPQYIAAKH 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G  K+   HP+++P+L+ET G +IYQEQ+MQI+  L+G+SL EAD+LRRA+GKK +E + 
Sbjct: 644  GTSKVQYAHPVLEPILRETHGFMIYQEQIMQISSTLAGFSLGEADILRRAVGKKKRELLA 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +Q+E+F++G  + G    +   +++L+ +FADYGFNK+H+ AYA+I+YQ A++K  YP+ 
Sbjct: 704  EQREKFVAGCVRQGYGDELGNQVYDLIVRFADYGFNKAHSVAYAIIAYQMAYLKATYPLA 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+AA ++L + +  +I ++ ++AR+  + ++ P VN     F V  + I + LAA+K VG
Sbjct: 764  FMAALLSLSIGSQTRIAEYTEEARRLQLTVLGPDVNKSLAFFTVEQDAIRFGLAAVKNVG 823

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                  I++    +P+  + DFC+RVD++ +NRRV+ESL   GALD     R QLL  LD
Sbjct: 824  YGAIESIVKERKGRPYRDVFDFCARVDARLVNRRVVESLTLCGALDSLPGHRNQLLLLLD 883

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVENSSVRFENEQRVLGFYFS 964
                 A      R     N+FA E+      +     +    + + + + E+ ++G Y S
Sbjct: 884  EAVGKANNKRIERDANQLNLFAGEEDAAPLREPAEYPEVPPLSHTQQLKEERDLIGVYIS 943

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            GHPLD +  +  +  +          R   +++  M+   ++ +T+KG  + ++T  +  
Sbjct: 944  GHPLDQFAHVASRPEVTVISSLGDVPRDKTVKVFGMITEARRIQTKKGDPMAFITLEDKT 1003

Query: 1025 KEYEANFFP 1033
               E   FP
Sbjct: 1004 APVELVVFP 1012


>gi|242280805|ref|YP_002992934.1| DNA polymerase III, alpha subunit [Desulfovibrio salexigens DSM 2638]
 gi|242123699|gb|ACS81395.1| DNA polymerase III, alpha subunit [Desulfovibrio salexigens DSM 2638]
          Length = 1175

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/1049 (37%), Positives = 598/1049 (57%), Gaps = 33/1049 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              FVHL VH+ YSLL+GA+ + ++  +      PA+AITD  ++F A+ F   A   GI+
Sbjct: 2    SEFVHLHVHTEYSLLDGAIRIKDLCQQAKDFGMPAVAITDHGSMFGAVTFYMTAMDMGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC++ +   D        +        +VLL    +GY+ +I+L S  +L +     
Sbjct: 62   PIIGCEVYVAPGDIDDELAHTRKDKKGRYHLVLLAKNQQGYKNIIKLCSLGFL-EGFHYK 120

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L +  +EG+I L+   +G + RA          +   T++ +F    Y+ +Q 
Sbjct: 121  PRVSKYLLNKY-SEGVIALSACLAGEVPRALMNEGLDAGIEMAKTYESIFPGNFYLEVQA 179

Query: 189  HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++   ++++ + A    LPLVATN+  +L++EDYEAHD+L+ +   T V  + R R
Sbjct: 180  NGLKEQEDLNELIYKCAEQTGLPLVATNDCHYLTKEDYEAHDLLLCIQTQTTVDAEKRFR 239

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + T   Y K + E    F+ +PEA+ NT +IA  C+  +++     P +   E   I   
Sbjct: 240  MGTDQLYFKPQEEFEEYFAHVPEAIANTQKIAEMCNLEIELGNYYFPEYELPEGMTI--- 296

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E E       GL+ R+             Y +RLD+EL VI  M F  YFLIV DFI W
Sbjct: 297  -ETEFVKLCKEGLQKRIEN--APYEIDEAKYWERLDYELGVINEMGFPAYFLIVQDFINW 353

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N IPVGPGRGS AGS+ A+AL IT++DP+ + LLFERFLN +R+SMPD D+DFC+ R
Sbjct: 354  AKDNRIPVGPGRGSAAGSIVAWALRITNLDPIPYDLLFERFLNVERVSMPDIDVDFCERR 413

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP--- 483
            R EV++Y   KYG + VAQI T+G+++ KA ++DVGRA+ M +S+ D + KL+P+DP   
Sbjct: 414  RLEVVKYCSEKYGWDHVAQITTYGTMKTKAVIKDVGRAMGMHFSETDPIAKLVPDDPAVI 473

Query: 484  --------AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                    A      A+            DP + +L++I+ +LEG+ RHASTHAAG+VI 
Sbjct: 474  AQGLGVKKAKITVPNAVEAIPELSNMVATDPKIAKLMDIATRLEGMSRHASTHAAGVVIS 533

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV 594
            D+P++  +P+Y+  +    VTQ++MK +EK GLIKFDFLGL+T+T+++  LD +  Q   
Sbjct: 534  DKPMTDYLPLYKG-KKGEIVTQYDMKKVEKVGLIKFDFLGLRTMTVIEDCLDIIRLQGKE 592

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              DL  +  DD +T+ +     T G+FQ+ESSGMR+ L  ++P C EDIIA+++LYRPGP
Sbjct: 593  APDLDTLTLDDQDTFDIFCKGDTDGVFQVESSGMRKYLRMLRPSCFEDIIAMLALYRPGP 652

Query: 655  IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            + + +V  +  RK+G+ ++  + P ++P LK T GVI+YQEQVM  A  ++ YSL E D+
Sbjct: 653  LGSGMVDEFIKRKHGEIEVTYLWPTLEPSLKPTYGVIVYQEQVMGAAMTIANYSLGEGDL 712

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKKI EEM K + RF+ GA +N I +  A +IF+L+ +FA YGFNKSH+AAYA+I
Sbjct: 713  LRRAMGKKIPEEMAKHRVRFVDGAKENNIPEQTANDIFDLMEQFAAYGFNKSHSAAYALI 772

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SY TA++K H+PVEF+AA M+ EM+N EKI  +    R  ++ +  P +N     F V +
Sbjct: 773  SYYTAYLKAHFPVEFMAALMSTEMNNTEKIIMYINACRDMDVTVRQPDINLGVARFSVYE 832

Query: 833  NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I Y +A IK VG      I+E    + PF    DF +RV+ +++ +RV+E L+ AGA 
Sbjct: 833  GDIIYGMAGIKNVGEEAIDEIVEERQKNGPFKDFIDFITRVNLRRVTKRVIEYLIRAGAF 892

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE------KFSV 945
            D  G +R  L+ SLD    Y Q   K + +   N+     G    +              
Sbjct: 893  DSMGLTRSGLIASLDKAVSYGQKKNKEKESGMINMLDMLGGGGEAEEPAVVSFEEFNMPE 952

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             +       E+  LGFY + HPL  Y+  + ++G++  E          I+L A++   +
Sbjct: 953  MDDKEMQRLEKEALGFYLTCHPLLSYRNEMSRLGLQTIENCPNLAHEATIKLGAIITGYK 1012

Query: 1006 QKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
            +  T+K G ++ + T  +     E   FP
Sbjct: 1013 EIITKKSGKKMAFATIEDMTGSGELIIFP 1041


>gi|313906491|ref|ZP_07839825.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
 gi|313468681|gb|EFR64049.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
          Length = 1157

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1047 (35%), Positives = 579/1047 (55%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YSLL+G+  + + + ++      A AITD   ++  + F ++  AAGI+P
Sbjct: 2    SFVHLHTHTEYSLLDGSNKIKDYVARVKELGMNAAAITDHGVMYGCIAFYKECLAAGIRP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +      +   +          ++LL    EGY  L+++VSR +  +      
Sbjct: 62   ILGCEVYVAPGSRFQK--EAGNSEERYYHLILLAENNEGYHNLLKIVSRGFT-EGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+ L  L+E   EG+I L+   +G +      N  +   +  L ++++FG    ++ LQ 
Sbjct: 119  RVDLEVLREYH-EGIICLSACLAGEVATYLAKNMYEEGLQAALRYQEIFGKGNFFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +     Q+++++    + LV TN+  +   ED +AHD+L+ +     VS ++R R
Sbjct: 178  HGIPQQQVVNPQLLRMSEETGIELVCTNDCHYTRAEDADAHDILLCIQTGKKVSDENRLR 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  EM ++F    +ALENT +IA RC+  ++ H   LP++   E       
Sbjct: 238  YEGGQYYVKSEEEMAALFPYAKQALENTQKIADRCNVEIRFHELKLPKYEVPEG----YT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L+     G+                + R+RLD+EL+VI  M +  YFLIV D+I +
Sbjct: 294  SWTYLQKICEDGIRKL-------YDPVTDEIRERLDYELDVIRTMGYVDYFLIVWDYIHF 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK++ IPVGPGRGS AGS+ +YA+ IT++DPL++SLLFERFLNP+R+SMPD D+DF  +R
Sbjct: 347  AKEHGIPVGPGRGSAAGSIVSYAMGITELDPLKYSLLFERFLNPERVSMPDIDVDFGFER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG++ A+ A+RDVGR L +PY+  D   K+IP +    
Sbjct: 407  RQEVIDYVVRKYGKDRVVQIVTFGTMAARNAIRDVGRVLDLPYALCDSTAKMIPQELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   ++   AD  +  L+++++KLEGL RH S HAAG+VI  + + + VP+ 
Sbjct: 467  ID-KALKMNPELKKEYEADDQIRYLIDMARKLEGLPRHTSMHAAGVVISSKEVDEFVPLQ 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDD 605
                     TQ+NM  +E+ GL+K DFLGL+TLT++Q ++        V +D+  I ++D
Sbjct: 526  TAA-DGTVTTQYNMTELEELGLLKMDFLGLRTLTVIQDAVSMAQRNHNVSIDMMKIDYND 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                 ++      G+FQLES+GM+  ++ ++P  +EDI+A V+LYRPGP+D I  Y   K
Sbjct: 585  PAVMKMIGEGKDEGVFQLESAGMKSFMKELKPSSLEDIVAGVALYRPGPMDFIPQYIRGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
               +++    P +  +L+ T G I+YQEQVMQI + L+GYS   +D+LRRAM KK    M
Sbjct: 645  KHPDEVQYDCPQLKAILEPTYGCIVYQEQVMQIVRELAGYSYGGSDLLRRAMSKKKMHVM 704

Query: 726  DKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            ++++  F        I G  +NGI + +A  I++ +  FA Y FNKSHAAAYA++S+QTA
Sbjct: 705  EEERRNFVYGNEERGIPGCIRNGIDEKVANKIYDDMIDFAKYAFNKSHAAAYALVSFQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+K +YPVEF+AA MT  +DN  K  ++    R   I+I+PP++N     F V D +I Y
Sbjct: 765  WLKCYYPVEFMAALMTSVIDNTAKCAEYMMHTRALGIEILPPNINKSEGTFSVEDGKIRY 824

Query: 838  SLAAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            +L+AIKGVG      I +E   +  F +L DFC R+  +++N+R LE+ + AGA DC G 
Sbjct: 825  ALSAIKGVGRPVIDAISLERDQNGSFKNLGDFCRRLTGREVNKRTLENFIKAGAFDCLGG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +Q    +   A   +KN      ++F    E+     +I L      +       
Sbjct: 885  TRRQFMQVYTLVADQAVKEKKNNATGQLSLFDLMGEEDRQQYEIRLPDVGEFDKEEILSF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEE--------SVATIRGNNIRLAAMVVSKQQ 1006
            E+ V G Y SGHPL+  +   RK       +              GN   +  ++V K  
Sbjct: 945  EKEVTGIYISGHPLESDEKKWRKNITCVSADFALPEEGNLPKLKDGNRETIGGIIVDKTI 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T K   + ++T  +     E   FP
Sbjct: 1005 KYTSKNQTMAFLTIEDLVGSVEVIVFP 1031


>gi|310641197|ref|YP_003945955.1| DNA polymerase iii, alpha subunit [Paenibacillus polymyxa SC2]
 gi|309246147|gb|ADO55714.1| DNA polymerase III, alpha subunit [Paenibacillus polymyxa SC2]
          Length = 1221

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/1030 (39%), Positives = 600/1030 (58%), Gaps = 16/1030 (1%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
             SFVHL VHS YSLL+GA     ++ + +A    A+A+TD   ++ A+ F +     GI+
Sbjct: 2    SSFVHLHVHSEYSLLDGAARTAELVKQASAYGMKALALTDHGVMYGAIPFYRACVENGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC+  +      +   +G      +  ++LL     GYQ L++L S  +L +     
Sbjct: 62   PIIGCEAYMTAGSRKE---RGSRKDQPIYHLILLAKNKTGYQNLMKLCSIGHL-EGFHYK 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI +  L     EG+I L+    G + +         A +    ++ +FGD  Y+ LQ 
Sbjct: 118  PRIDMDALAA-HHEGIICLSACLGGEVPQHLLHGREAEARRAAERYRSIFGDDFYLELQD 176

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ R   Q++ LA   ++PLVATN+  +L+E D +  DVL+ +     V  ++R R
Sbjct: 177  HGLSEQKRVNPQLIALAKELDIPLVATNDVHYLTEPDADVQDVLICIGTGKTVDDEERLR 236

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T   YLK++ EM  +F  + EA+ NTV IA +C   L+    ILP +           
Sbjct: 237  IPTRQLYLKSQEEMARLFPHVAEAIANTVRIAEKCELELEFGQSILPEY---RPLPEDMT 293

Query: 307  EENELRNKAVAGLEVRLAQGAI-AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + LR+  V GLE R     +  +    +   QRL++ELN I  M FS YFLIV DFI 
Sbjct: 294  SSSYLRSLCVQGLERRYGGDPVWEQPEERERLDQRLNYELNTIDSMGFSDYFLIVWDFIA 353

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A K+ I  GPGRGS AGS+ AY L IT++DP++++LLFERFLNP+R+SMPD DIDF  +
Sbjct: 354  FAHKHKITTGPGRGSSAGSLVAYVLNITNVDPMKYNLLFERFLNPERISMPDIDIDFSDE 413

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI YV  KYG+E VAQIITFG+L A+AA+RDVGR L +PY +VD+  KLIP     
Sbjct: 414  RRDEVIDYVVQKYGNEHVAQIITFGTLAARAAVRDVGRVLNVPYGEVDKAAKLIPAQLGI 473

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +   A+      +      P    LL+++ K+EG+ RHASTHAAG+VI   PL+  VP+
Sbjct: 474  NI-RHALEITPELKALYETKPKTRELLDMAIKVEGMPRHASTHAAGVVISRTPLTDAVPL 532

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFD 604
              +    +P+TQ++M+ +E+ GL+K DFLGL+TL+++++ +     Q G   D S +P D
Sbjct: 533  Q-EGSEGVPLTQYSMENLERIGLLKMDFLGLRTLSIIERCMRWIAEQHGETPDFSRVPDD 591

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY LL    T G+FQLES+G+R+ L+ ++P   EDII++V+LYRPGP+  I  +   
Sbjct: 592  DPHTYDLLGKGDTGGVFQLESAGVRRVLKDLKPSVFEDIISVVALYRPGPMGFIPNFIQA 651

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+ +I   HP ++P+LK+T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E 
Sbjct: 652  KHGQIEISYPHPDLEPILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKKREV 711

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D ++  F+ G+ K G ++  A  +++++ +FADYGF ++HAAAY V+++QTA++K HYP
Sbjct: 712  LDLERGHFVEGSIKQGYTEEEAGRVYDMIVRFADYGFPRAHAAAYGVLAFQTAYLKAHYP 771

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIK 843
            V+F+A+ +T  M +  K+ ++  + R+ +I ++PP VN   V F       I + LAAIK
Sbjct: 772  VQFMASMLTAVMGSHRKVAEYVVECRRMDIAVLPPDVNESGVLFTPLQHGDIRFGLAAIK 831

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
             VGT     I+    ++PFDSL DFC RVD +  N+RV+ESL+ AGA D     R QLL 
Sbjct: 832  NVGTQAMESILAVRKERPFDSLLDFCRRVDLRVCNKRVIESLIQAGAFDSLTGHRAQLLA 891

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             LD     A    K R +   ++F   +    D I        ++S + E E+ +LG Y 
Sbjct: 892  MLDETVDAAAKWRKERDDLQIDMFGFVEMPNWD-IEYPNVPPFSTSQQLELERELLGLYL 950

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            SGHPLD ++ +L         E         I  A MVVS +   T++G  + ++   + 
Sbjct: 951  SGHPLDDFESLLESSQADRLMELSDVPDETVIVTAGMVVSLKTITTKQGKAMAFIELEDQ 1010

Query: 1024 AKEYEANFFP 1033
             +  E   FP
Sbjct: 1011 IERCEVVLFP 1020


>gi|253580959|ref|ZP_04858221.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847801|gb|EES75769.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 1155

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1046 (35%), Positives = 576/1046 (55%), Gaps = 41/1046 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F + A A GI PI
Sbjct: 3    FTHLHVHTEYSLLDGSNKIKEYVARVKELGMDSAAITDHGVMYGVIDFYRAARAEGINPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +          +  +       +VLL    +GY  L+++VS+ +  +      R
Sbjct: 63   LGCEVYVAPGSRFDR--EAGSGEDRYYHLVLLAENNQGYANLMKIVSKGFT-EGFYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            + L+ L+E   EG+I L+   +G + R       + A+   L ++ +FG    ++ LQ H
Sbjct: 120  VDLAVLKEYH-EGIIALSACLAGEVARYLQRGMYEDAKAAALRYQDIFGKGNFFLELQDH 178

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                 R    +++++     + LVATN+  +   ED + HD+L+ +  +  ++ +DR R 
Sbjct: 179  GIPAQRLVNQELLRMHEETGIDLVATNDVHYTRAEDADPHDILLCLQTNKKLADEDRMRY 238

Query: 249  T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                +Y+K+  EM  +F    EALENT +IA+RC   ++     LPRF   +        
Sbjct: 239  EGGQYYVKSPEEMAELFPYALEALENTHKIAQRCHVEIEFGVTKLPRFDVPDG----LTS 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L      GLE R            ++ + RL++EL+ I  M +  YFLIV DFI++A
Sbjct: 295  WEYLNKLCFEGLEERYQP-------VTEELKARLNYELSTIKNMGYVDYFLIVWDFIKYA 347

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            + ++I VGPGRGS AGS+ AY L IT +DP+R+ LLFERFLNP+R+SMPD D+DFC +RR
Sbjct: 348  RDHDIMVGPGRGSAAGSLVAYTLGITQLDPIRYDLLFERFLNPERVSMPDIDVDFCFERR 407

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV+ KYG + V QI+TFG+L A+  +RDVGR L MPY+QVD + K+IP +    +
Sbjct: 408  QEVIEYVRRKYGDDCVVQIVTFGTLAARGVIRDVGRVLDMPYAQVDSIAKMIPQELNITI 467

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   ++A      +  L++++++LEGL RH S HAAG+VI  + +S+ VP+ R
Sbjct: 468  D-KALTMNPELKKAYEEQDEIHYLIDMARRLEGLPRHTSMHAAGVVISQKDVSEYVPLSR 526

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606
                   VTQF M  +E+ GL+K DFLGL+TLT++Q ++  + +      D+  I +DD 
Sbjct: 527  AS-DGSIVTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVKLIQKDAGVTLDMQKINYDDK 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +    L T  + G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y   KN
Sbjct: 586  KVLDSLGTGRSDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPQYIRGKN 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              + I    P ++P+LK T G I+YQEQVMQI + L+GY+L  +D++RRAM KK    M+
Sbjct: 646  RPDTIRYDCPQLEPILKPTYGCIVYQEQVMQIVRNLAGYTLGRSDLVRRAMSKKKASVME 705

Query: 727  KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K+++ F+         G   NGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTA+
Sbjct: 706  KERQNFVYGNEAEGVPGCIANGIDEATANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTAY 765

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YPVEF+AA MT  +D   K+ ++    RQ  I+I+PP VN     F V +  I Y 
Sbjct: 766  LKYYYPVEFMAALMTSVIDFPNKVAEYILVCRQMGIKILPPDVNCGMYGFSVDNGAIRYG 825

Query: 839  LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L+AIK VG      ++     +  + SL+DF  R +S ++N+R +E+ + AGALDC   +
Sbjct: 826  LSAIKSVGRPVIESLVREREENGQYRSLKDFMER-NSPQMNKRAVENFIKAGALDCLDGN 884

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFENE 955
            R Q +     I       +KN      ++F    E+     +I +              E
Sbjct: 885  RRQKMLVYQKISDSISQDKKNSLAGQMSLFDLVSEEDKKEFEIRMPDVEEFGKEELLGYE 944

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEE--------SVATIRGNNIRLAAMVVSKQQK 1007
            + VLG Y SGHPL+ Y+ ++ K       +            + G  + +  M+  K  K
Sbjct: 945  KEVLGIYLSGHPLENYRGMMEKTISAKTSDFQQDEETNLPKVMDGQKVIIGGMITDKTIK 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T+    + ++T  +     E   FP
Sbjct: 1005 YTKNNKVMAFLTVEDLVGTVEVVVFP 1030


>gi|295110725|emb|CBL24678.1| DNA polymerase III catalytic subunit, DnaE type [Ruminococcus obeum
            A2-162]
          Length = 1155

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1046 (36%), Positives = 587/1046 (56%), Gaps = 41/1046 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G+  +   +D++      + AITD   ++  ++F + A AAGI PI
Sbjct: 3    FTHLHVHTEYSLLDGSNKIKEYVDRVRELGMDSAAITDHGVMYGVIDFYRAARAAGINPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +          +  +       +VLL    +GY  L+++VS+ + ++      R
Sbjct: 63   LGCEVYVAPGSRFDR--EAGSGDDRYYHLVLLAENNQGYSNLMKIVSKGF-VEGFYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            + LS L++   EG+I L+   +G + R       + A+K  L ++ +FG    ++ LQ H
Sbjct: 120  VDLSLLEKYH-EGIIALSACLAGEVARFLTRGMYEDAKKAALRYQDIFGKGNFFLELQDH 178

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     Q++++     + LVATN+  +   ED + HDVL+ +     ++ +DR R 
Sbjct: 179  GIPEQQNVNQQLLKMHRETGIELVATNDVHYTLAEDAQPHDVLLCLQTGKKLADEDRMRY 238

Query: 249  T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                +Y+K+  EM  +F   PEALENT +IA+RC   ++     LP+F   E        
Sbjct: 239  EGGQYYVKSPEEMERLFPYAPEALENTHKIAQRCHVEIEFGVTKLPKFGVPEG----YTS 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L      GLE R            ++ ++RL++EL+ I  M +  YFLIV DFI++A
Sbjct: 295  WEYLNELCFKGLEERYQP-------VTEELKERLNYELSTIRNMGYVDYFLIVWDFIKYA 347

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            + ++I VGPGRGS AGS+ AY L IT +DP+R+ LLFERFLNP+R+SMPD D+DFC +RR
Sbjct: 348  RDHDIMVGPGRGSAAGSLVAYTLGITQLDPIRYDLLFERFLNPERVSMPDIDVDFCFERR 407

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV+ KYG + V QI+TFG+L A+  +RDVGR + +PY+QVD + K+IP +    +
Sbjct: 408  QEVIDYVRRKYGDDCVVQIVTFGTLAARGVIRDVGRVMDLPYAQVDTIAKMIPQELNITI 467

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +  F++A      +  L++ +++LEGL RH S HAAG+VI  + +S+ VP+ R
Sbjct: 468  D-KALQMNPEFKKAYEEQKEIHDLIDTAKRLEGLPRHTSMHAAGVVISQKDVSEYVPLSR 526

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606
                   VTQF M  +E+ GL+K DFLGL+TLT++Q ++  + Q      D+  I ++D 
Sbjct: 527  AS-DGSIVTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVHLIEQDAGVKLDMQHIDYNDK 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +    L T  + G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y   KN
Sbjct: 586  KVLDSLGTGRSDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPQYIRGKN 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              + I    P ++ +LK T G I+YQEQVMQI + L+GY+L  +D++RRAM KK    M+
Sbjct: 646  RPDTIKYDCPQLESILKPTYGCIVYQEQVMQIVRNLAGYTLGRSDLVRRAMSKKKAAVME 705

Query: 727  KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K+++ F+         G   NGIS+  A  I++ +  FA Y FNKSHAAAYAV+SYQTA+
Sbjct: 706  KERQNFVYGNEEEGVPGCIANGISEQTANKIYDDMIDFAKYAFNKSHAAAYAVVSYQTAF 765

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YPVEF+AA MT  ++   K+ ++ Q  RQ NI+I+PP VN     F V +  I Y 
Sbjct: 766  LKYYYPVEFMAALMTSVIEMPTKVAEYIQVCRQMNIKILPPDVNRGAYGFSVDNGAIRYG 825

Query: 839  LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L+AIK VG      ++E   A+  + SL+DF  R+ +  +N+R +E+ + AGALDC   +
Sbjct: 826  LSAIKSVGRPVINALVEEREANGEYRSLKDFIERL-TGTVNKRAIENFIKAGALDCLEGN 884

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFENE 955
            R Q +     I       +KN      ++F    ++     +I +      +  +    E
Sbjct: 885  RRQKMLVYGQIVDSIAQEKKNSFAGQMSLFDLVSDEEKKEYEIRMPDVEEYDKEMILAFE 944

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--------RGNNIRLAAMVVSKQQK 1007
            + VLG Y SGHPL+ Y+ I+ KM      +              G  + +  M+  K  K
Sbjct: 945  KDVLGIYLSGHPLERYRNIMEKMISAKTTDFQPDEESGIPKVYDGQKVIIGGMITEKTIK 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             TR    + ++T  +     E   FP
Sbjct: 1005 YTRNNKVMAFLTVEDLLGTVEIVVFP 1030


>gi|260588911|ref|ZP_05854824.1| DNA polymerase III alpha subunit [Blautia hansenii DSM 20583]
 gi|331083399|ref|ZP_08332511.1| hypothetical protein HMPREF0992_01435 [Lachnospiraceae bacterium
            6_1_63FAA]
 gi|260540690|gb|EEX21259.1| DNA polymerase III alpha subunit [Blautia hansenii DSM 20583]
 gi|330404092|gb|EGG83640.1| hypothetical protein HMPREF0992_01435 [Lachnospiraceae bacterium
            6_1_63FAA]
          Length = 1156

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1046 (35%), Positives = 578/1046 (55%), Gaps = 40/1046 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G+  +N  + ++      + AITD   +F  ++F + A AAGI+PI
Sbjct: 3    FAHLHVHTEYSLLDGSNKINEYVARVKELGMNSAAITDHGVMFGCIDFYRAAKAAGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +          +          +VLL     GY+ L+++VS+ + +D      R
Sbjct: 63   LGCEVYVAPGSRFDR--EIGQAEDRYYHLVLLAENNHGYENLMKIVSKAF-VDGFYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            + +  LQE   EG+I L+   +G + +       + A+   L ++K+FG    ++ LQ H
Sbjct: 120  VDMDLLQEYH-EGIIALSACLAGEVAKNITRGMYEEAKSAALRYEKIFGKGNFFLELQDH 178

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                + R   Q+++++    + LVATN+  +  + D EAHD+L+ V    ++S ++R R 
Sbjct: 179  GIPQQQRVNQQLLRMSQETGIALVATNDVHYTYDTDAEAHDILLCVQTRKLLSDENRMRY 238

Query: 249  T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                +Y+K+  EM  +F  +PEALENT +IA RC   ++     LP+F            
Sbjct: 239  EGGQYYVKSPEEMAELFPYIPEALENTQKIADRCEVEIEFGVTKLPKFDVP----APYTS 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L      GL+ R +           +  +RL++EL VI  M +  YFLIV DFI++A
Sbjct: 295  WEYLNKLCYDGLKERYSGDLT-------ELEKRLEYELGVIKTMGYVDYFLIVWDFIRFA 347

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            + ++I VGPGRGS AGS+ +Y L IT +DP++++LLFERFLNP+R+SMPD D+DFC +RR
Sbjct: 348  RDHDIMVGPGRGSAAGSLVSYTLGITKLDPIKYNLLFERFLNPERVSMPDIDVDFCFERR 407

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RV QI+TFG++ A+  +RDVGR + +PY+Q D + K+IP +    +
Sbjct: 408  QEVIDYVVEKYGKDRVVQIVTFGTMAARGVIRDVGRVMDLPYAQCDAIAKMIPEELNITI 467

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   +     D  V +L+++S++LEGL RH S HAAG+VI  + + + VP+ R
Sbjct: 468  D-KALKMNPELKNLYTTDEMVKKLIDMSRRLEGLPRHTSMHAAGVVISQKSVDEYVPLAR 526

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDH 606
                   VTQF M  +E+ GL+K DFLGL+TLT++QK++      +G+ +D+  + ++D 
Sbjct: 527  AS-DGSIVTQFTMTTLEELGLLKMDFLGLRTLTVIQKAVKLIEKNKGISLDMDHVDYNDK 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y +L    T G+FQLES+GM   ++ ++P+ +ED+IA +SLYRPGP+D I  Y   KN
Sbjct: 586  AVYDMLGAGKTEGVFQLESAGMTSFMKELKPESLEDVIAGISLYRPGPMDFIPQYIEGKN 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              + I  + P ++P+L  T G I+YQEQVMQI + L GY+L  +D++RRAM KK    M+
Sbjct: 646  NPDSIHFLCPQLEPILSATYGCIVYQEQVMQIVRSLGGYTLGRSDLVRRAMSKKKAAVME 705

Query: 727  KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K+++ F+         G    GIS+ IA  I+E +  FA Y FNKSHAAAYAV++YQTA+
Sbjct: 706  KERQNFVYGNEEEGVPGCVNRGISEEIANKIYEQMMDFAKYAFNKSHAAAYAVVAYQTAY 765

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K H+PVEF+AA MT  +DN  K+  +    R+  I I+PP +N     F V    I Y 
Sbjct: 766  LKCHFPVEFMAALMTSVIDNPPKVADYILSCRRMGIAILPPDINKGDSTFSVDGGGIRYG 825

Query: 839  LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L+AIK +G      I+        F SL DF  R+  K +N++ +E+ + AGA D    +
Sbjct: 826  LSAIKSIGKPVIESIVAERNQRGDFTSLRDFIERMTGKDVNKKAIENFIKAGAFDELPGN 885

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFENE 955
            R Q +     I       +KN      ++F    E+   + +I +          +   E
Sbjct: 886  RRQKMMVYAQILDAIVQEKKNMMAGQMSLFDFVSEEEKTAYEIHMPDVEEYPKEAKLAFE 945

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------TIRGNNIRLAAMVVSKQQK 1007
            + VLG Y SGHPL+ Y+   RK       + +            G  + +  M+  K  K
Sbjct: 946  KEVLGIYISGHPLEEYETCWRKNISAVTTDFMPDEESGQPKVRDGQQVIVGGMITEKTIK 1005

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T+    + ++T  +     E   FP
Sbjct: 1006 YTKTNKVMAFLTLEDLLGTVEIVVFP 1031


>gi|227824700|ref|ZP_03989532.1| DNA polymerase III [Acidaminococcus sp. D21]
 gi|226905199|gb|EEH91117.1| DNA polymerase III [Acidaminococcus sp. D21]
          Length = 1156

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1036 (35%), Positives = 588/1036 (56%), Gaps = 30/1036 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ +SLL+GA  + +++        PA+AITD   ++ A+EF Q+    GI+PI
Sbjct: 22   FVHLHTHTQFSLLDGACRIPDLVSYAKELGMPALAITDHGVMYGAIEFYQECVKQGIKPI 81

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ I    +     + +     +  ++LL     GYQ L++LVS    ++      R
Sbjct: 82   IGCEVYITSGSHTVKNMEAR---GKLYHLILLAENRTGYQNLMKLVSIG-QVEGFYYKPR 137

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            I    L++   EGLI L+   +G + R       + AEK +L +  +FG D  Y+ +Q H
Sbjct: 138  IDKQDLRKYH-EGLICLSACVAGEVARHIVRGEKETAEKVMLEYLDIFGRDHYYLEIQNH 196

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +      ++  LA  + + LVATN+  ++ ++D +  D+L+ +  +       R R 
Sbjct: 197  GLPEEKAVADELHHLARKYNVKLVATNDLHYVHQDDAKGQDILLCIQTNARYLDPQRMRF 256

Query: 249  TPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D +YLK+RSEM ++F D  EAL+NT+EIA RC   L+    +LP F   E +      
Sbjct: 257  NNDSYYLKSRSEMEALFPDDAEALDNTLEIADRCDLTLEFGHLLLPEFPLPEGET---SM 313

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L+   V G + R  +   +        ++R+D+EL +I +M +SGYFLIV DFI + 
Sbjct: 314  DAYLKKLCVKGFQERYPKDDGSA-------QKRMDYELGIIRQMGYSGYFLIVWDFINYC 366

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            + ++IPVGPGRGS AGS+ AY   ITDIDPL+++L+FERFLNP+R+SMPD D D C  +R
Sbjct: 367  RTHDIPVGPGRGSAAGSIVAYLTGITDIDPLKYNLIFERFLNPERVSMPDIDTDICYVKR 426

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
              V+ Y+ +KYG   VAQI+TFG+L AKAA++DVGR++++P + V ++ KLIPN P   +
Sbjct: 427  HLVVDYLASKYGESHVAQIVTFGTLAAKAAIKDVGRSMEVPLNVVGQVNKLIPNTPGTTL 486

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                +      ++    DPS+ +L++ + ++EG+ RH STHAAG+VI    L+  VP+  
Sbjct: 487  KSA-LEGSRDLQQLVQNDPSIAQLMDFAGRVEGMPRHTSTHAAGVVITPGELTNYVPLQI 545

Query: 548  DVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIP 602
               SD       TQ++    E  GL+K D LGL+TLT++  ++  + +      D+  I 
Sbjct: 546  TSTSDDDHEYICTQYDKDCSEALGLLKMDLLGLRTLTVIDDTVKMIEKNQGIKLDIHHID 605

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--V 660
             +D +T  +L    T  +FQ+ES GM + ++ + P+ + D+I LV+LYRPGP+ + +   
Sbjct: 606  LEDPKTCQMLCAGDTAAVFQMESDGMTRLMKELGPESMADLIPLVALYRPGPLGSGMAED 665

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   ++GK     +HPL++P++ +T GVI+YQEQVMQI  +L G+SL EAD+LRRAMGKK
Sbjct: 666  FIAGRHGKRTARVLHPLMEPIVADTYGVILYQEQVMQIVSVLGGFSLGEADILRRAMGKK 725

Query: 721  IKEEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
              + +D  KE+F++  A ++ IS+ +   IF LL  FA YGFNKSH+AAYA+++YQTA++
Sbjct: 726  KAKLLDSMKEKFLAGAAREHQISRQLGEEIFALLQHFAGYGFNKSHSAAYALVAYQTAYL 785

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K +YPVE++AA +   +   EK+  +    R   I+++PP +N+    F V  + + + L
Sbjct: 786  KANYPVEYMAAFLNSVITVAEKVSWYISVCRDMGIKVLPPDINSSEAAFSVDGDNVRFGL 845

Query: 840  AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIK VG T    I++       F    DF SRVD  K+N+RV+E+L+ +G++D FGY R
Sbjct: 846  GAIKSVGETAVAVILKERERHGLFKDFFDFASRVDLTKVNKRVVENLIKSGSMDTFGYRR 905

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             QLL  +D     A   + +R     ++F  +    +  I +              E+ +
Sbjct: 906  RQLLAIMDRALDAAAQDQHDRMTGQLSLFGGDTRQSAAAIPIPDLPEIPKDEVLRLEKEL 965

Query: 959  LGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            +GFY +GHPLD ++ +L  M GI    E      G  + +  ++   + + T+KG R+  
Sbjct: 966  IGFYVTGHPLDAFRKVLSSMTGIARCTE-EHYHDGERVTVGGLITGVRIRSTKKGERMAT 1024

Query: 1018 VTFSEPAKEYEANFFP 1033
                +         FP
Sbjct: 1025 FMLEDLTGSIGVIAFP 1040


>gi|153815935|ref|ZP_01968603.1| hypothetical protein RUMTOR_02180 [Ruminococcus torques ATCC 27756]
 gi|317500700|ref|ZP_07958918.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|145846754|gb|EDK23672.1| hypothetical protein RUMTOR_02180 [Ruminococcus torques ATCC 27756]
 gi|316897894|gb|EFV19947.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 1157

 Score =  805 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1047 (36%), Positives = 590/1047 (56%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F ++A + GI P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMYGVIDFYREAKSQGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +           G         +VLL    EGY  L+++VS+ + ++      
Sbjct: 62   ILGCEVYVAPNSRFDREVTGGE--DRYYHLVLLAENNEGYANLMKIVSKGF-VEGYYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L++  + G+I L+   +G + R         A+K  L ++ +FG D  Y+ LQ 
Sbjct: 119  RVDKELLRKYHS-GIIALSACLAGEVSRYLMKGLYDEAKKAALEYRDIFGKDHFYLELQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+     Q+++++    + LVATN+  +   +D +AHD+L+ +     ++ ++R R
Sbjct: 178  HGLPDQGLVNQQLLKMSRETGIELVATNDVHYTYAKDEKAHDILLCIQTGKRLADENRMR 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  EM S+F    +ALENT +IA RC   ++     LP++   +       
Sbjct: 238  YEGGQYYIKSEEEMKSLFPYALQALENTQKIADRCLVEIEFGVTKLPKYDVPDG----YT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     GLE             A + R+RLD+EL  I  M +  YFLIV DFI++
Sbjct: 294  SWEYLRKLCYEGLEK-------RYAERADELRERLDYELGTIKNMGYVDYFLIVWDFIKY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + I VGPGRGS AGS+ +Y L IT IDP+R+ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  AKDHGIAVGPGRGSAAGSIVSYCLGITTIDPIRYQLLFERFLNPERVSMPDIDVDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG+L A+  +RDVGR + MPY+ VD + K+IP +P   
Sbjct: 407  RQEVIDYVVGKYGKDRVVQIVTFGTLAARGVIRDVGRVMDMPYAFVDSIAKMIPQEPKMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   R+    D  V  L+E++++LEGL RH+S HAAG+VI  + + + VP+ 
Sbjct: 467  IE-KALKVNPELRKMCEDDEEVKYLIEMAKRLEGLPRHSSMHAAGVVISQKSVDEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            R        TQF M  +E+ GL+K DFLGL+TLT++Q ++    ++   V++  + +DD 
Sbjct: 526  RAA-DGSVTTQFTMTTLEQLGLLKMDFLGLRTLTVIQNAVLMARKKDPSVNMDTLDYDDK 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +    + T  T GIFQLES+GM+  ++ ++P+ +ED+IA +SLYRPGP+D I  Y   KN
Sbjct: 585  KVLEYIGTGKTDGIFQLESAGMKSFMKELKPNSLEDMIAGISLYRPGPMDFIPQYIKGKN 644

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                I    P ++P+L  T G I+YQEQVMQI + L+GYSL  +D+LRRAM KK  EEM 
Sbjct: 645  DASSISYDCPQLEPILNSTYGCIVYQEQVMQIVRDLAGYSLGRSDLLRRAMSKKKGEEMK 704

Query: 727  KQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            ++++ F        I G  KNGI + +A  I++ +  FA+Y FNKSHAAAYAV++YQTAW
Sbjct: 705  RERQIFLYGDEASGIPGCVKNGIDEQVANKIYDEMLDFANYAFNKSHAAAYAVVAYQTAW 764

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YPVE++AA MT  +DN  K+ ++   +RQ  IQI+PP +N    DF V +  I Y 
Sbjct: 765  LKYYYPVEYMAALMTSVIDNPSKVAEYIYASRQMGIQILPPDINNGEADFSVDEGNIRYG 824

Query: 839  LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSK-KLNRRVLESLVFAGALDCFGY 896
            L+AIK VG    R ++E      P+ +LEDF +RV SK  LN+R +E+L+ AGALD  G 
Sbjct: 825  LSAIKSVGRPVVRAMLEERRTFGPYKNLEDFITRVSSKEGLNKRTIENLIKAGALDTLGG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     I  +    +K   +   ++F    E+     +I +      +   +   
Sbjct: 885  TRKQFMSIYIQIMDHVNQEKKYSMSGQMSLFDLVGEEEKADFQIRMPDVGEYSKENKLAF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPL+ ++   R+M      +              G    +  M+V K  
Sbjct: 945  EKEVLGVYISGHPLEEHEERWRRMISATTADFQFDEELNRTKVHDGEKSVVGGMIVDKTV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + ++T  +     E   FP
Sbjct: 1005 KYTKTNQVMAFLTLEDLLGTVEVVIFP 1031


>gi|331089825|ref|ZP_08338718.1| hypothetical protein HMPREF1025_02301 [Lachnospiraceae bacterium
            3_1_46FAA]
 gi|330403522|gb|EGG83080.1| hypothetical protein HMPREF1025_02301 [Lachnospiraceae bacterium
            3_1_46FAA]
          Length = 1157

 Score =  805 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1047 (36%), Positives = 590/1047 (56%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F ++A + GI P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMYGVIDFYREAKSQGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +           G         +VLL    EGY  L+++VS+ + ++      
Sbjct: 62   ILGCEVYVAPNSRFDREVTGGE--DRYYHLVLLAENNEGYANLMKIVSKGF-VEGYYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L++  + G+I L+   +G + R         A+K  L ++ +FG D  Y+ LQ 
Sbjct: 119  RVDKELLRKYHS-GIIALSACLAGEVSRYLMKGLYDEAKKAALEYRDIFGKDHFYLELQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+     Q+++++    + LVATN+  +   +D +AHD+L+ +     ++ ++R R
Sbjct: 178  HGLPDQGLVNQQLLKMSRETGIELVATNDVHYTYAKDEKAHDILLCIQTGKRLADENRMR 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  EM S+F    +ALENT +IA RC   ++     LP++   +       
Sbjct: 238  YEGGQYYIKSEEEMKSLFPYALQALENTQKIADRCLVEIEFGVTKLPKYDVPDG----YT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     GLE             A + R+RLD+EL  I  M +  YFLIV DFI++
Sbjct: 294  SWEYLRKLCYEGLEK-------RYAERADELRERLDYELGTIKNMGYVDYFLIVWDFIKY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + I VGPGRGS AGS+ +Y L IT IDP+R+ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  AKDHGIAVGPGRGSAAGSIVSYCLGITTIDPIRYQLLFERFLNPERVSMPDIDVDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG+L A+  +RDVGR + MPY+ VD + K+IP +P   
Sbjct: 407  RQEVIDYVVRKYGKDRVVQIVTFGTLAARGVIRDVGRVMDMPYAFVDSIAKMIPQEPKMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   R+    D  V  L+E++++LEGL RH+S HAAG+VI  + + + VP+ 
Sbjct: 467  IE-KALKVNPELRKMCEDDEEVKYLIEMAKRLEGLPRHSSMHAAGVVISQKSVDEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            R        TQF M  +E+ GL+K DFLGL+TLT++Q ++    ++   V++  + +DD 
Sbjct: 526  RAA-DGSVTTQFTMTTLEQLGLLKMDFLGLRTLTVIQNAVLMARKKDPSVNMDTLDYDDK 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +    + T  T GIFQLES+GM+  ++ ++P+ +ED+IA +SLYRPGP+D I  Y   KN
Sbjct: 585  KVLEYIGTGKTDGIFQLESAGMKSFMKELKPNSLEDMIAGISLYRPGPMDFIPQYIKGKN 644

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                I    P ++P+L  T G I+YQEQVMQI + L+GYSL  +D+LRRAM KK  EEM 
Sbjct: 645  DASSISYDCPQLEPILNSTYGCIVYQEQVMQIVRDLAGYSLGRSDLLRRAMSKKKGEEMK 704

Query: 727  KQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            ++++ F        I G  KNGI + +A  I++ +  FA+Y FNKSHAAAYAV++YQTAW
Sbjct: 705  RERQIFLYGDEASGIPGCVKNGIDEQVANKIYDEMLDFANYAFNKSHAAAYAVVAYQTAW 764

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YPVE++AA MT  +DN  K+ ++   +RQ  IQI+PP +N    DF V +  I Y 
Sbjct: 765  LKYYYPVEYMAALMTSVIDNPSKVAEYIYASRQMGIQILPPDINNGEADFSVDEGNIRYG 824

Query: 839  LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSK-KLNRRVLESLVFAGALDCFGY 896
            L+AIK VG    R ++E      P+ +LEDF +RV SK  LN+R +E+L+ AGALD  G 
Sbjct: 825  LSAIKSVGRPVVRAMLEERRTFGPYKNLEDFITRVSSKEGLNKRTIENLIKAGALDTLGG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     I  +    +K   +   ++F    E+     +I +      +   +   
Sbjct: 885  TRKQFMSIYIQIMDHVNQEKKYSMSGQMSLFDLVGEEEKADFQIRMPDVGEYSKENKLAF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPL+ ++   R+M      +              G    +  M+V K  
Sbjct: 945  EKEVLGVYISGHPLEEHEERWRRMISATTADFQFDEELNRTKVHDGEKSVVGGMIVDKTV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + ++T  +     E   FP
Sbjct: 1005 KYTKTNQVMAFLTLEDLLGTVEVVIFP 1031


>gi|291550544|emb|CBL26806.1| DNA polymerase III catalytic subunit, DnaE type [Ruminococcus torques
            L2-14]
          Length = 1157

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1047 (35%), Positives = 582/1047 (55%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ +SLL+G+  +   + ++      + AITD   ++  ++F ++A   GI P
Sbjct: 2    SFAHLHVHTEFSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYREAKKQGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +           G         +VLL    EGY  L ++VS+ + ++      
Sbjct: 62   ILGCEVYVAPNSRFDREITGG--DDRYYHLVLLAENEEGYANLTKIVSKGF-VEGYYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+    L++   +G+I L+   +G + R       + A+K  L ++++FG+   ++ LQ 
Sbjct: 119  RVDKELLRKYH-KGIIALSACLAGEVARFLTKGLYEEAKKTALEYQEIFGEGNFFLELQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++     Q+ +++    + LVATN+  +   ED + HD+L+ +     +S ++R R
Sbjct: 178  HGIPEQGLVNQQLFKMSEETGIELVATNDIHYTYAEDAKPHDILLCIQTGKKLSDENRMR 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  EM+ +F    +ALENT +IA RC   ++     LP++   +       
Sbjct: 238  YDGGQYYVKSEEEMLRLFPYAKQALENTQKIADRCHVEIEFGVTKLPKYDVPDG----YT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L+     GLE          G  +++ ++RL +EL  I +M +  YFLIV DFI++
Sbjct: 294  SWEYLQKLCYEGLEK-------RYGDPSEELKERLSYELETIHQMGYVDYFLIVWDFIKY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + I VGPGRGS AGS+ +Y L IT IDP+R+ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  AKDHGISVGPGRGSAAGSIVSYCLEITTIDPIRYQLLFERFLNPERVSMPDIDVDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG + VAQI+TFG+L A+  +RDVGR + +PY+ VD + K+IP +    
Sbjct: 407  RQEVIDYVTRKYGKDCVAQIVTFGTLAARGVIRDVGRVMDLPYAYVDSISKMIPQELGIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   ++    D +V  L++++++LEGL RH S HAAG+VI  +P+ + VP+ 
Sbjct: 467  ID-KALKMNPDLKKLYDTDETVTNLIDMAKRLEGLPRHCSMHAAGVVICQKPVDEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            R        TQF M  +E+ GL+K DFLGL+TLT++Q ++    ++  +++++ I ++D 
Sbjct: 526  RAA-DGTITTQFIMTTLEELGLLKMDFLGLRTLTVIQNAVLLARRKQPELNINQIDYNDQ 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +    + T  T G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y   KN
Sbjct: 585  KVLDYIGTGKTDGVFQLESAGMKGFMKELKPHNLEDVIAGISLYRPGPMDFIPQYIRGKN 644

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                I    P ++P+L  T G I+YQEQVMQI + L+GYSL  +D+LRRAM KK    M+
Sbjct: 645  DSSSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYSLGRSDLLRRAMSKKKAAVME 704

Query: 727  KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K+++ FI         G  KNGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTAW
Sbjct: 705  KERKIFIYGDEETGVPGCIKNGIDEQTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTAW 764

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K ++PVE++AA MT  +DN  K+ ++    RQ NI+I+PP +N    +F V    I Y 
Sbjct: 765  LKYYFPVEYMAALMTSVIDNPSKVSEYIYACRQMNIKILPPDINKGEANFSVDGGDIRYG 824

Query: 839  LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK-LNRRVLESLVFAGALDCFGY 896
            LAAIK +G    + I+E   +   F +LEDF +R+ +K  LN+R +E+L+ AGALD  G 
Sbjct: 825  LAAIKSIGRPVIKAIVEDREELGLFQNLEDFITRLSAKNILNKRTIENLIKAGALDTLGG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVENSSVRFEN 954
            +R Q +     I  +    +KN       +F        ++  I +      +       
Sbjct: 885  TRKQFMSIYVQIVDHVTQEKKNSMVGQMTLFDLVSEDQKEEFQIRMPDVGEYSKETLLAF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPL+ Y+   +K       +              G    +  M+  K  
Sbjct: 945  EKEVLGIYVSGHPLEAYEEKWKKSISATTADFQLDEETGHTKVHDGAKEIIGGMITEKTI 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + ++T  +     E   FP
Sbjct: 1005 KHTKTNQMMAFITVEDLLGTVEVVVFP 1031


>gi|161618789|ref|YP_001592676.1| DNA polymerase III subunit alpha [Brucella canis ATCC 23365]
 gi|254704138|ref|ZP_05165966.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686]
 gi|256044502|ref|ZP_05447406.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str.
            Rev.1]
 gi|256060935|ref|ZP_05451093.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33]
 gi|256113358|ref|ZP_05454216.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str.
            Ether]
 gi|260563856|ref|ZP_05834342.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M]
 gi|260566613|ref|ZP_05837083.1| DNA polymerase III subunit alpha [Brucella suis bv. 4 str. 40]
 gi|261324935|ref|ZP_05964132.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33]
 gi|261754804|ref|ZP_05998513.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686]
 gi|265990926|ref|ZP_06103483.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str.
            Rev.1]
 gi|265994764|ref|ZP_06107321.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str.
            Ether]
 gi|161335600|gb|ABX61905.1| DNA polymerase III, alpha subunit [Brucella canis ATCC 23365]
 gi|260153872|gb|EEW88964.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M]
 gi|260156131|gb|EEW91211.1| DNA polymerase III subunit alpha [Brucella suis bv. 4 str. 40]
 gi|261300915|gb|EEY04412.1| DNA polymerase III subunit alpha [Brucella neotomae 5K33]
 gi|261744557|gb|EEY32483.1| DNA polymerase III subunit alpha [Brucella suis bv. 3 str. 686]
 gi|262765877|gb|EEZ11666.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 3 str.
            Ether]
 gi|263001710|gb|EEZ14285.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str.
            Rev.1]
 gi|326408847|gb|ADZ65912.1| DNA polymerase III subunit alpha [Brucella melitensis M28]
 gi|326538562|gb|ADZ86777.1| DNA polymerase III, alpha subunit [Brucella melitensis M5-90]
          Length = 1163

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 590/1033 (57%), Positives = 761/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVS  QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + +   A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|260168558|ref|ZP_05755369.1| DNA polymerase III subunit alpha [Brucella sp. F5/99]
 gi|261758031|ref|ZP_06001740.1| DNA polymerase III subunit alpha [Brucella sp. F5/99]
 gi|261738015|gb|EEY26011.1| DNA polymerase III subunit alpha [Brucella sp. F5/99]
          Length = 1163

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 590/1033 (57%), Positives = 761/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVS  QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + +   A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|254706961|ref|ZP_05168789.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10]
 gi|254709931|ref|ZP_05171742.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94]
 gi|256031424|ref|ZP_05445038.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1]
 gi|256159545|ref|ZP_05457313.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1]
 gi|256254832|ref|ZP_05460368.1| DNA polymerase III subunit alpha [Brucella ceti B1/94]
 gi|261222013|ref|ZP_05936294.1| DNA polymerase III subunit alpha [Brucella ceti B1/94]
 gi|261314424|ref|ZP_05953621.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10]
 gi|261317477|ref|ZP_05956674.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94]
 gi|265988513|ref|ZP_06101070.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1]
 gi|265997977|ref|ZP_06110534.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1]
 gi|260920597|gb|EEX87250.1| DNA polymerase III subunit alpha [Brucella ceti B1/94]
 gi|261296700|gb|EEY00197.1| DNA polymerase III subunit alpha [Brucella pinnipedialis B2/94]
 gi|261303450|gb|EEY06947.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M163/99/10]
 gi|262552445|gb|EEZ08435.1| DNA polymerase III subunit alpha [Brucella ceti M490/95/1]
 gi|264660710|gb|EEZ30971.1| DNA polymerase III subunit alpha [Brucella pinnipedialis M292/94/1]
          Length = 1163

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 590/1033 (57%), Positives = 761/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVS  QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + +   A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|225627320|ref|ZP_03785357.1| DNA polymerase III, alpha subunit [Brucella ceti str. Cudo]
 gi|225617325|gb|EEH14370.1| DNA polymerase III, alpha subunit [Brucella ceti str. Cudo]
          Length = 1190

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 590/1033 (57%), Positives = 761/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 41   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 100

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 101  GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 160

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 161  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 219

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 220  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 279

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 280  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 339

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 340  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 399

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 400  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 459

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 460  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 519

Query: 483  PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVS  QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 520  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 579

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 580  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 639

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 640  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 699

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 700  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 759

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 760  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 819

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 820  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 879

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 880  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 939

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 940  CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 998

Query: 962  YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + +   A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 999  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1058

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1059 LSDASGQFEAVLF 1071


>gi|17987420|ref|NP_540054.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 1 str. 16M]
 gi|17983111|gb|AAL52318.1| DNA polymerase iii, alpha chain [Brucella melitensis bv. 1 str. 16M]
          Length = 1178

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 590/1033 (57%), Positives = 761/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 29   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 88

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 89   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 148

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 149  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 207

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 208  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 267

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 268  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 327

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 328  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 387

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 388  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 447

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 448  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 507

Query: 483  PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVS  QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 508  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 567

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 568  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 627

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 628  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 687

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 688  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 747

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 748  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 807

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 808  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 867

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 868  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 927

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 928  CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 986

Query: 962  YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + +   A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 987  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1046

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1047 LSDASGQFEAVLF 1059


>gi|306843761|ref|ZP_07476360.1| DNA polymerase III, alpha subunit [Brucella sp. BO1]
 gi|306275952|gb|EFM57665.1| DNA polymerase III, alpha subunit [Brucella sp. BO1]
          Length = 1163

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 591/1033 (57%), Positives = 760/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD  PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADDAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRAVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVS  QAI  + +  E R  +P V RLL+I+ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDIALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + +   A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|256369256|ref|YP_003106764.1| DNA polymerase III subunit alpha [Brucella microti CCM 4915]
 gi|255999416|gb|ACU47815.1| DNA polymerase III subunit alpha [Brucella microti CCM 4915]
          Length = 1163

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 590/1033 (57%), Positives = 760/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD  PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADDAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVS  QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + +   A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|294852181|ref|ZP_06792854.1| DNA polymerase III subunit alpha [Brucella sp. NVSL 07-0026]
 gi|294820770|gb|EFG37769.1| DNA polymerase III subunit alpha [Brucella sp. NVSL 07-0026]
          Length = 1188

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 589/1033 (57%), Positives = 760/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 39   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 98

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 99   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 158

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 159  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 217

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 218  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 277

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 278  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 337

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 338  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 397

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 398  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 457

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 458  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 517

Query: 483  PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVS  QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 518  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 577

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLK LT+LQ ++  +A++G+ +DLS +
Sbjct: 578  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKMLTVLQTAVKLVARKGIDIDLSHL 637

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 638  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 697

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 698  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 757

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 758  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 817

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 818  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 877

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 878  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 937

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 938  CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 996

Query: 962  YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + +   A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 997  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1056

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1057 LSDASGQFEAVLF 1069


>gi|320529018|ref|ZP_08030110.1| DNA polymerase III, alpha subunit [Selenomonas artemidis F0399]
 gi|320138648|gb|EFW30538.1| DNA polymerase III, alpha subunit [Selenomonas artemidis F0399]
          Length = 1130

 Score =  804 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1032 (36%), Positives = 590/1032 (57%), Gaps = 26/1032 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YSLL+GA  +  ++ +       ++AITD   ++ A+ F ++A A GI P
Sbjct: 2    SFVHLHVHTEYSLLDGASRIKELVQRTKELGMDSVAITDHGVMYGAIAFYKEAMAQGIHP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  Q   +              ++LL     GY+ L+ LVS   + +      
Sbjct: 62   IIGCEVYVAPQSRHERAEVDGVR---YYHLILLAENEIGYRNLVRLVSLANI-EGYYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L++   EG+I L+   +G I R+      +  ++ L  +  +FG D  ++ LQ 
Sbjct: 118  RVDKDLLRQYH-EGIIALSACVAGEIPRSILRGDPERTDEILAEYVDIFGRDNFFLELQD 176

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +       +  L+  H++ LVATN+  ++  ED E HD+L+ V     ++  +R R
Sbjct: 177  HGLPEEKTVNHALRDLSKKHDIGLVATNDIHYVRAEDSEFHDILLCVQTGRTINDPNRMR 236

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + PD+YLK+ +EM ++F D P A+ENT +IA RC          LP +   E      +
Sbjct: 237  FSGPDYYLKSEAEMTALFHDYPGAVENTAKIAARCRVDFTFGELQLPFYPIPEKF---AD 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            ++  LR            +          + R RLD+EL VI  M ++ YFLIV DFI +
Sbjct: 294  DDAYLRTLCEE-------RLPERYSEITNEIRSRLDYELGVIHGMGYASYFLIVWDFINY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ + + VGPGRGS AGS+ AY L IT+IDPLR++LLFERFLNP+R+SMPD DIDF    
Sbjct: 347  ARGHGVAVGPGRGSAAGSIVAYLLGITNIDPLRYALLFERFLNPERVSMPDIDIDFDDIN 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R  VI YV+ +YG + VAQI TFG++ AK A+RDVGR L+M +S+V  + KL+P++    
Sbjct: 407  RGRVISYVKERYGEDHVAQIATFGTMGAKGAIRDVGRVLEMSFSEVSNITKLVPSELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ + + FR     D SV R++++++K+EGL R+ S HAAG+VI   PL+  VP++
Sbjct: 467  ID-RALKESADFRRLYDEDESVRRVIDLARKIEGLPRNTSIHAAGVVIAKEPLTNHVPVW 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
              +     VT+F+   +E  GL+K DFLGL+TL++++ +L  +    G+ +D+  IP +D
Sbjct: 526  --ISEGTLVTEFDKDDVEALGLLKMDFLGLRTLSIIEDALKNIRTSHGIDIDIDNIPLED 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
              T  +L    T  +FQ+ES+GM   ++ +QP    D+I  V+LYRPGP+ + +   + +
Sbjct: 584  DLTAQMLCDGDTGAVFQMESAGMTNLVKDLQPKGFVDLIPTVALYRPGPLGSGMVTDFID 643

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
              +GK+++V +HPL+ P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK  E
Sbjct: 644  GLHGKKEVVYMHPLLAPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGKKKHE 703

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  QKE F++G + NGI   +A +IF+LL  FADYGFNKSH+A+Y ++++QTA++K HY
Sbjct: 704  LLMAQKESFLAGCANNGIDAPLANHIFDLLTHFADYGFNKSHSASYGLLAWQTAYLKAHY 763

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF+A  +T  MD  +KI  + +   Q  I+I+PP +N+    F +    I + LAA++
Sbjct: 764  PVEFMAGVLTSIMDKTDKIPVYIRLCHQMKIRILPPDINSSAATFSIESGAIRFGLAAVR 823

Query: 844  GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      +     +  PF SL DFC+RVD + LN+R +ESL+  GA D  G  R  LL
Sbjct: 824  NVGENAIAVLEHVREEGGPFRSLVDFCTRVDLRILNKRAIESLIKCGAFDSLGIDRNHLL 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENEQRVLGF 961
             SL+     A   +++  +    +F  E      +I   +   +     R   E+   GF
Sbjct: 884  ASLNAAVTDAARRQRDLLSGQIGLFGDEAMAEIQQIGDFDDVPLCTPRERLTWEKEATGF 943

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y +GHPL+  +  L  +   G   +        +R+  ++ S ++  T+KG  + +    
Sbjct: 944  YITGHPLEDNQETLSHLQPIGQIAAAVRRDRQLMRVGGILTSTKRFTTKKGDTMLFADLE 1003

Query: 1022 EPAKEYEANFFP 1033
            +     E   FP
Sbjct: 1004 DFTGTLEVTVFP 1015


>gi|325972730|ref|YP_004248921.1| DNA polymerase III subunit alpha [Spirochaeta sp. Buddy]
 gi|324027968|gb|ADY14727.1| DNA polymerase III, alpha subunit [Spirochaeta sp. Buddy]
          Length = 1155

 Score =  804 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1032 (39%), Positives = 607/1032 (58%), Gaps = 18/1032 (1%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             +   FVHL  H+ +SLL+GA  +   + K  +    ++AITD  N+F AL F   A  A
Sbjct: 10   TQQSRFVHLHNHTDFSLLDGAAPIGRYMAKAKSLGMTSLAITDHGNMFGALRFYNAARDA 69

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PIIGC+   +   + +    G    P    ++LL    +GY  L+EL S  Y     
Sbjct: 70   GIKPIIGCEFYCNPAGHTERPAPGG-RKPNQYHLILLAINEKGYHNLMELNSLSYTQG-F 127

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYV 184
                RI    L +   EG+I L+    G I +    +  + A++R L F  +F D R Y+
Sbjct: 128  YFKPRIDDELLVKY-NEGVICLSACLGGEILQHLLNDQYEKAKERALWFSSVFDDGRYYL 186

Query: 185  NLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +Q H   D+ R + ++ QL+    +PLV TN+  ++ ++D  A D+L+ V  ++  +  
Sbjct: 187  EMQDHNLPDQKRTNPLLKQLSEETGIPLVCTNDIHYIEKDDANAQDLLLCVGTNSKKNDP 246

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            DR R    + Y+K+  +M SIFS  PEALENT +IA RC+  + +  P+LP F   +   
Sbjct: 247  DRMRFPNQEFYMKSEEQMASIFSWCPEALENTGKIADRCNLEIHLPGPLLPDFEVPQGF- 305

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +   + LR+ +  GL+              ++  +RLD+EL+VI +MKF GYFLIV D
Sbjct: 306  --EGPAHYLRHLSHEGLKK-------RYSVVTEELTKRLDYELDVIIKMKFEGYFLIVMD 356

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +IQWAKK++IPVGPGRGSGAGS+ AY++ ITD+DP++++LLFERFLNP+R+SMPDFDIDF
Sbjct: 357  YIQWAKKHDIPVGPGRGSGAGSLVAYSIDITDVDPIKYNLLFERFLNPERVSMPDFDIDF 416

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV   YG ERVAQI TFG+L+AKA ++DV R L +P+ + + +CKLIP+D
Sbjct: 417  CFERRQEVINYVTEHYGTERVAQIATFGTLKAKAVVKDVARVLDIPFDESNNICKLIPDD 476

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +  +A   +    E          L + +++LEGL RH STHAAG+VIG   L   
Sbjct: 477  PKMTL-AKAFEQNKELVELEQKGGIYAELFDAARRLEGLNRHTSTHAAGVVIGKEELVNY 535

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD ++    TQ+ M  IE+ GL+K DFLGLKTLTL++ + D + ++  K   + I 
Sbjct: 536  VPLYRDAKTGAISTQYTMDLIEECGLVKMDFLGLKTLTLIKHTEDLIHKKDPKFTSTAID 595

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
              D +T+ +L    +  +FQ ES GM+  L+  +P  IED++AL +LYRPGP+  I  + 
Sbjct: 596  EKDPKTFEMLCRGDSTAVFQFESQGMQNILKEAKPSNIEDLVALNALYRPGPMAYIPQFV 655

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            N K G++ I   +P ++  LK T GVI+YQEQVM++AQ+++GYSL  AD+LRR MGKK  
Sbjct: 656  NCKLGRQPITYANPELEEELKTTYGVIVYQEQVMKVAQIIAGYSLGGADILRRIMGKKKV 715

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              ++K+K +FI+GA   G S+  A  IFE+L  FA YGFNKSHA AY+V++YQTA++K +
Sbjct: 716  AALEKEKVKFIAGAKALGRSEQHAAEIFEMLEPFAGYGFNKSHAVAYSVVAYQTAFLKAN 775

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP EF AA++T EM + +K  ++ Q A+   ++I+PPSVN     F V + +I Y LA I
Sbjct: 776  YPAEFWAANLTNEMGSPDKFSEYLQVAKDQGLEILPPSVNYSDKHFSVVNGKIVYGLAGI 835

Query: 843  KGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K VG      ++ E  A  P+  L DF +R+D+K +N ++LESL+ AGA D  G +R  L
Sbjct: 836  KNVGEGVVELLVSEREAHGPYKDLLDFLTRLDAKAMNTKLLESLIKAGAFDTLGTNRPTL 895

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L++L +   Y Q  ++       ++F  E     +  T++         + E E+ +LGF
Sbjct: 896  LENLGDAITYVQKRKEATAFGQISLFDDETEASMETFTMKPAEDWKLPEKLEMEKGLLGF 955

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y SGHPLD +   + +                   + AMV S +   T+KG  + ++  +
Sbjct: 956  YISGHPLDAFSQAINQRVTANTAHLENVAFNRPTNIIAMVSSIRPFTTQKGGIMAFLQLT 1015

Query: 1022 EPAKEYEANFFP 1033
            +    ++A  FP
Sbjct: 1016 DRNATFDATLFP 1027


>gi|23501712|ref|NP_697839.1| DNA polymerase III subunit alpha [Brucella suis 1330]
 gi|23347636|gb|AAN29754.1| DNA polymerase III, alpha subunit [Brucella suis 1330]
          Length = 1163

 Score =  804 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 589/1033 (57%), Positives = 761/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVS  QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA++K 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYIKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + +   A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|306841939|ref|ZP_07474617.1| DNA polymerase III, alpha subunit [Brucella sp. BO2]
 gi|306287972|gb|EFM59380.1| DNA polymerase III, alpha subunit [Brucella sp. BO2]
          Length = 1163

 Score =  804 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 589/1033 (57%), Positives = 760/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD  PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADDAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  R+   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARMAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRAVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVS  QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPKETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + +   A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|209885082|ref|YP_002288939.1| DNA polymerase III subunit alpha [Oligotropha carboxidovorans OM5]
 gi|209873278|gb|ACI93074.1| DNA polymerase III subunit alpha [Oligotropha carboxidovorans OM5]
          Length = 1157

 Score =  804 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 536/1035 (51%), Positives = 712/1035 (68%), Gaps = 13/1035 (1%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  SP F+HL VHS+YSLL+G++    +     AD QPA+A+TD +N+F ALEFS+K   
Sbjct: 1    MA-SPGFIHLHVHSAYSLLQGSMKTEKLAALAKADNQPALALTDRDNMFGALEFSEKLAG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GIQPIIGC L +D  D            P    IVLL  T + Y+ L+ L SR +L   
Sbjct: 60   LGIQPIIGCALAVDFGDVDPAARNAAALAPAR--IVLLAPTEDSYRSLMRLNSRAFLEMP 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +Q+  I   WL++    GLI LTGG  GPI +A      ++A +R+     LFGDRLY+
Sbjct: 118  AQQTPHIKAEWLEQE-RTGLIALTGGPEGPISQALMAEHPELALQRVEKLADLFGDRLYL 176

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH    +R  ES ++ +AY   LPLVATN   F + EDYE+HD L+ +A   ++++ 
Sbjct: 177  ELQRHGLDSERRIESALIDIAYGKGLPLVATNEPYFATVEDYESHDALLCIAGGRLLAET 236

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK--ECD 301
            +R  +TPDH  K R+EM  +F+DLPEAL +TVEIA+RC+F  +   PILP F        
Sbjct: 237  ERAHLTPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAFRPRKRKPILPHFTVDSDHMA 296

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D   +E  EL+ +A  GL  RL    +A+G   +DYR RL +E++VI RM +SGYFLIV+
Sbjct: 297  DAVSKENAELQKQAEEGLARRLKAHGLAEGKTEEDYRTRLAYEMSVITRMNYSGYFLIVS 356

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK   IPVGPGRGSGAGS+ AYALTITD+DPLRF+LLFERFLNP+R+SMPDFDID
Sbjct: 357  DFIKWAKSQGIPVGPGRGSGAGSLVAYALTITDLDPLRFALLFERFLNPERVSMPDFDID 416

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR EVI YVQ +YG + VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P 
Sbjct: 417  FCQDRRGEVIDYVQRRYGADHVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQ 476

Query: 482  DPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA PV+  +AI  + + +  R  DP V R  +I+Q+LEGL RHASTHAAGIVIGDRPLS
Sbjct: 477  NPAAPVTLAKAIEGEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLS 536

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L Q  + VDL+ 
Sbjct: 537  ELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQSNIHVDLAH 596

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD +TY +LT    +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPGP+ NI  
Sbjct: 597  LPLDDKQTYDMLTRGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPT 656

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y  RK+G E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL EAD+LRRAMGKK
Sbjct: 657  YCARKHGDEEPEYLHPVLEPILKETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMGKK 716

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+ EM+KQ+ RF+SG+ ++ ISK+ A  IFELLAKFADYGFNKSHAAAYA++SYQTA+MK
Sbjct: 717  IRAEMEKQRVRFVSGSVEHSISKSQADQIFELLAKFADYGFNKSHAAAYALVSYQTAYMK 776

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEF+AASMTL+  N +K+ +F  +A++  I++ PPS+N     F VG+N I+YSLA
Sbjct: 777  AHYPVEFIAASMTLDTGNTDKLSEFRAEAQRLGIKVEPPSINRSEGTFTVGENTIFYSLA 836

Query: 841  AIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            A+KGVGT     I+EA  +  PF SL DF +RV  + +N+RVLESL  AGA D    +R 
Sbjct: 837  ALKGVGTHAVDMIVEARKNGGPFTSLSDFAARVPPRAINKRVLESLAAAGAFDTIEPNRA 896

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
             +    D I    Q   +       ++F  + G     ITL        + R + E   +
Sbjct: 897  AVFAGADAILAACQRSHEEAVLGQSDMFGGQTGG--PVITLPHVEPWLPAERLQREYGAV 954

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGW 1017
            GF+ SGHPLD YK +L+++ ++ + E  + ++      ++AA VVS+ +++T+ G+++G 
Sbjct: 955  GFFLSGHPLDDYKVVLQRLNVQSWAEFASAVKNGRTAGKVAATVVSRMERRTKTGNKMGI 1014

Query: 1018 VTFSEPAKEYEANFF 1032
            +  S+P   +EA  F
Sbjct: 1015 IGLSDPTGHFEAVLF 1029


>gi|86604788|ref|YP_473551.1| DNA polymerase III subunit alpha [Synechococcus sp. JA-3-3Ab]
 gi|86553330|gb|ABC98288.1| DNA polymerase III, alpha subunit [Synechococcus sp. JA-3-3Ab]
          Length = 1161

 Score =  804 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1041 (35%), Positives = 599/1041 (57%), Gaps = 26/1041 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L +HS YSLL+GA  L  +++++ A   P +A+TD   ++ A+E  +   + GI+P
Sbjct: 2    AFVPLHLHSEYSLLDGASQLPLLIEQVVAMGLPGLALTDHGVMYGAIELVKLCKSKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
            IIG ++ +   D    + +           V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62   IIGNEMYVINGDIRDKSRKYPK-----YHQVVLAKNTQGYKNLVKLTTISHLQGVQGKGI 116

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   +L +   EGLI+ +G  +G + +A      ++A +    +++ FGD  Y+ 
Sbjct: 117  FARPCINKEYLAQY-KEGLIVTSGCLAGEVPQAILQGRPEIARQVAAWYQEQFGDDYYIE 175

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR+   Q+V++A    +P++ TN+S F+S  D EAHD L+ +     +++K+
Sbjct: 176  IQDHGYREDRFVNVQLVRIARELGIPIILTNDSHFISCWDVEAHDALLCIQTGKSLTEKN 235

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R R +   YLK+  EM  +  D    E ++  +    +    ++ +       +      
Sbjct: 236  RLRYSGTEYLKSPEEMRRLCRDHLEQEVIDEAIANTLKVLEKIEGYDLFGETRMPDYPVP 295

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                 ++ L   A  GL  R   G        ++Y++RL FELN+I +  FS YFL+V D
Sbjct: 296  PGHSADSYLTELAWQGLAKRC--GVAYPDQIPENYQERLRFELNIIQQKGFSSYFLVVWD 353

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            ++++A+++ IPVGPGRGS AGS+ AYAL IT+IDP+++ LLFERFLNP+R SMPD D DF
Sbjct: 354  YVRYAREHGIPVGPGRGSAAGSLVAYALQITNIDPVKYGLLFERFLNPERQSMPDIDTDF 413

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR E+I YV  KYG ERVAQIITF  + +KA L+DVGR L +PY++ D++ KLIP  
Sbjct: 414  CIERRGELIDYVTRKYGQERVAQIITFNRMTSKAILKDVGRVLDIPYAEADKMAKLIPVS 473

Query: 483  PAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
               P  L+ +  +      F+E    DP+  R +E+++ LEG  +    HAAG+VI   P
Sbjct: 474  RGKPAKLEEMIGENTPAPEFKEKYEKDPTTHRWIELARLLEGTNKTFGVHAAGVVISKDP 533

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597
            L ++VP+  +      +TQ++M+ IE  GL+K DFLGL+ LT++Q++++ +   RGV +D
Sbjct: 534  LDEIVPLQYN-NEGQIITQYSMEDIESLGLLKMDFLGLRNLTMIQRAVELIREHRGVTID 592

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  +P DD +TY LL      GIFQLESSGM+Q +  ++P  +EDI ++++LYRPGP+D 
Sbjct: 593  LDNLPLDDEKTYQLLEKGELEGIFQLESSGMKQVVRELKPSNLEDISSVLALYRPGPLDT 652

Query: 658  IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +   + +RK+G++ +   H L+ P+L++T G I+YQEQ+M+IAQ ++GY+L +AD+LRR
Sbjct: 653  GMIPDFIDRKHGRKPVTYAHDLLKPILQDTYGAILYQEQIMRIAQDMAGYTLGQADLLRR 712

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK   EM+K +E+F+ GA + G++K +A  +F+ +  FA+Y FNKSH+ AY +I++Q
Sbjct: 713  AMGKKKVSEMEKHREQFVRGAVERGVAKEVATELFDQMVAFAEYCFNKSHSTAYGLITFQ 772

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K +YP E++AA ++    + +K++++        IQI PP +N   +DF    + I
Sbjct: 773  TAYLKANYPTEYMAALLSSVGGDQDKVQRYITYCLSIGIQIEPPDINRSGLDFTPQGSSI 832

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L A+K VG    ++I+ A  A  PF SL DFC RVD   +NRR +ESL+ AGA D  
Sbjct: 833  LFGLGAVKNVGEGAIQNILAARQAGGPFTSLADFCQRVDLHVVNRRAIESLICAGAFDGI 892

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRF 952
              +R QL+  LD I  +A    K++     ++F        F +              + 
Sbjct: 893  SGNRKQLMADLDPILNWAAEQAKSKAIGQASLFDLLGNDQGFIEAPRGPATEDFPPQEKL 952

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              E+ +LGFY S HPL   +   R +      +        ++ + A++ + +   T++G
Sbjct: 953  RLERELLGFYVSDHPLRRIQEQARLLAPVNLSDLSGYAADTSVGILALLTAIKTVTTKRG 1012

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
             R+  +   +     EA  FP
Sbjct: 1013 DRMAILQLEDLTGSCEAVIFP 1033


>gi|254718932|ref|ZP_05180743.1| DNA polymerase III subunit alpha [Brucella sp. 83/13]
 gi|265983919|ref|ZP_06096654.1| DNA polymerase III subunit alpha [Brucella sp. 83/13]
 gi|306838837|ref|ZP_07471668.1| DNA polymerase III, alpha subunit [Brucella sp. NF 2653]
 gi|264662511|gb|EEZ32772.1| DNA polymerase III subunit alpha [Brucella sp. 83/13]
 gi|306406121|gb|EFM62369.1| DNA polymerase III, alpha subunit [Brucella sp. NF 2653]
          Length = 1163

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 589/1033 (57%), Positives = 761/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  R+   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARMAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  ALQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVS  QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPKETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + +   A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|254689079|ref|ZP_05152333.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870]
 gi|256257328|ref|ZP_05462864.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68]
 gi|260754577|ref|ZP_05866925.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870]
 gi|260883604|ref|ZP_05895218.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68]
 gi|297248177|ref|ZP_06931895.1| DNA polymerase III subunit alpha [Brucella abortus bv. 5 str. B3196]
 gi|260674685|gb|EEX61506.1| DNA polymerase III subunit alpha [Brucella abortus bv. 6 str. 870]
 gi|260873132|gb|EEX80201.1| DNA polymerase III subunit alpha [Brucella abortus bv. 9 str. C68]
 gi|297175346|gb|EFH34693.1| DNA polymerase III subunit alpha [Brucella abortus bv. 5 str. B3196]
          Length = 1163

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 588/1033 (56%), Positives = 759/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + F   ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFPKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVS  QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD R D+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRFDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + +   A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|15893807|ref|NP_347156.1| DNA polymerase III DnaE [Clostridium acetobutylicum ATCC 824]
 gi|15023379|gb|AAK78496.1|AE007566_6 DNA polimerase III, alpha chain (dnaE) [Clostridium acetobutylicum
            ATCC 824]
          Length = 1167

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1059 (35%), Positives = 578/1059 (54%), Gaps = 54/1059 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YSLL+G+  +  ++++       +IAITD   ++  +EF + A   GI+P
Sbjct: 10   DFVHLHVHTEYSLLDGSGKVKKLVERAKELGMKSIAITDHGAMYGCVEFYKAAKEVGIKP 69

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +         +        +VLLV    GY+ L+E+VS   + +      
Sbjct: 70   IIGCEIYVAGKSMHIKHPDAEN---ETYHLVLLVKNEIGYKNLMEIVSTASI-EGFYYKP 125

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+   +L    +EGLI  +    G +      ++ + A+K  L +K+ F D  Y+ LQ H
Sbjct: 126  RVDHEYLMS-HSEGLIASSACFGGEVQSYILKDNLEKAKKAALFYKETFKDGFYLELQYH 184

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D       +V ++   ++PL+ATN+  ++++ED  AHD+L+ +     + +++R R 
Sbjct: 185  ALKDDMKVNDTLVNMSKELDIPLIATNDVHYINKEDSIAHDILLCIQTGKTIDEENRMRY 244

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 YLK++ EM   FS + EAL NT +IA  C+F  + H   LP F   E +D     
Sbjct: 245  APEQFYLKSQEEMYEQFSYVKEALLNTSKIADECNFEYKFHESKLPNFPLPEGEDHY--- 301

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+     GL                  ++RL++EL +I  M +  YFLIV DFI++A
Sbjct: 302  -EYLKKLCYEGLNE-------RYNPITDTIKERLEYELGIIKEMGYVDYFLIVWDFIKFA 353

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++N +P GPGRGS AGS+ AY L IT IDP+++SL+FERFLNPDR+SMPD D DFC + R
Sbjct: 354  RENGVPTGPGRGSAAGSIVAYTLGITKIDPIKYSLIFERFLNPDRVSMPDIDSDFCYENR 413

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +VI YV  KYG + V+QI+TFG++ A+  +RDVGRA+   Y +VD++ K+IPN     +
Sbjct: 414  QKVIDYVVEKYGKDCVSQIVTFGTMAARLCIRDVGRAMNYSYGEVDKIAKMIPNVLNINI 473

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   +     D  +  L++IS+KLEGL RH STHAAG+VI  +PL   VP+ +
Sbjct: 474  D-KALEMNPELKAIYDDDDRIKDLIDISRKLEGLPRHTSTHAAGVVISSQPLVNYVPLLK 532

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
            +   +  V QF M  +E+ GL+K DFLGL+TLT++  ++  + Q R + +D+  I FDD+
Sbjct: 533  N--EESIVAQFTMGILEELGLLKMDFLGLRTLTVINDTIKMVKQNRNIDIDIDDIDFDDY 590

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y ++    T+G+FQLES+GM   ++ ++PD +EDIIA +SLYRPGP++ I  Y   KN
Sbjct: 591  GVYKMIGEGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGISLYRPGPMNEIPRYIRNKN 650

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E+I  + P +  +L  T G IIYQEQVMQI + L+GYS+  +D++RRAM KK    M+
Sbjct: 651  NPEEIKYVTPELKHILDVTYGCIIYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHHVME 710

Query: 727  KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +++  FI             G  KNGIS+ IA  IF+ +  FA Y FNKSHAAAYAV++Y
Sbjct: 711  EERHNFIHGVVDENGNVEVPGCIKNGISEKIANEIFDSMMDFASYAFNKSHAAAYAVVAY 770

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            +TA++  +YP E+LAA +   M N EK+  + + A +  IQ++PP +N     F V ++ 
Sbjct: 771  ETAYLIHYYPAEYLAAMLNSVMGNSEKVAFYIRCAEELKIQVLPPDINGSYSRFTVKEDT 830

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + LAAIK VG      I+ A      F S  DFC+++D+ ++N+R +ES++ +G  D 
Sbjct: 831  IRFGLAAIKNVGFNVIESIVRARNEKGNFISFTDFCNKIDTSEVNKRAVESIIKSGGFDT 890

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVR 951
             G  R +LL   + I        K       N+F    +      +I        +    
Sbjct: 891  LGVYRSKLLAVFEKIMDGISGQRKKNIKGQMNLFTDFVQDDYEEVEIQYPDIKEFDKKYL 950

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-----------------VATIRGNN 994
               E+ + G Y SGHPL+ Y+  L+ M      +                       G  
Sbjct: 951  LAMEKEMTGLYLSGHPLEDYEETLKNMTSIKISDIVAPQSLEDNDGVKLDENTDVQDGTR 1010

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +  +V S  +K TR  + + ++   +     E   FP
Sbjct: 1011 VIIGGIVTSVTKKVTRSNTMMAFIKLEDMYAAIEVVIFP 1049


>gi|317152330|ref|YP_004120378.1| DNA polymerase III subunit alpha [Desulfovibrio aespoeensis Aspo-2]
 gi|316942581|gb|ADU61632.1| DNA polymerase III, alpha subunit [Desulfovibrio aespoeensis Aspo-2]
          Length = 1173

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1043 (40%), Positives = 609/1043 (58%), Gaps = 28/1043 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+GA+ +N++L +      PA+AITD  ++F A+ F  +A A GI+PI
Sbjct: 4    FVHLHVHSEYSLLDGAIRINDLLARAKDLGMPAVAITDHGSMFGAMTFYTEALAMGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +   D                 +VLL     GY+ LI+LV+  YL +      R
Sbjct: 64   IGCEVYVAPGDIDDAHAHEVKDKSGGYHLVLLAKNRIGYKNLIKLVTTGYL-EGFYYKPR 122

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   +L +   EGLI L+   +G + R       +        ++ +F    Y+ LQ + 
Sbjct: 123  VSK-YLLKQHAEGLIALSACLAGEVPRMLMNEGLEAGAAMAGEYESIFPGNFYLELQDNG 181

Query: 191  GYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
               + R ++ +++ A    LPLVATN+  +L+ EDYEAHD L+ +   T V  + R R+ 
Sbjct: 182  IGKQTRLNELLIKCAEKTGLPLVATNDCHYLTAEDYEAHDTLLCIQTQTTVDAEKRFRMD 241

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + Y K   EM   F+ +PEA+ NT  IA RC+  +++ +   P +   E      +  
Sbjct: 242  TRELYFKTPEEMEQAFAHVPEAIANTQRIAERCNLEIELGSYYFPEYELSEG---VADIN 298

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             E       GL  RLA  AI        Y +RLD+EL VI +M F  YFLIV DFI WAK
Sbjct: 299  EEFEKLCREGLRKRLA--AIPYPVDEAVYWKRLDYELGVIIKMGFPAYFLIVQDFINWAK 356

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N IPVGPGRGS AGS+ A++L IT++DPL + LLFERFLN +R+SMPD D+DFC+ RR 
Sbjct: 357  DNRIPVGPGRGSAAGSIVAWSLRITNLDPLPYDLLFERFLNVERISMPDIDVDFCERRRL 416

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EV++Y  +KYGH+RVAQI TFG+++ KA ++DVGRAL M + + DR+ KLIP DP     
Sbjct: 417  EVVKYCADKYGHDRVAQITTFGTMKTKAVIKDVGRALGMTFGETDRIAKLIPEDPGVMAK 476

Query: 489  LQAIADDS-----------RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L  +                  +    DP V +L++IS +LEGL RHASTHAAG+VI DR
Sbjct: 477  LLGVEKAKISVPNAVKAVIELDDMVATDPRVAKLIDISTRLEGLCRHASTHAAGVVISDR 536

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-V 596
            P+++ +P+Y+  +    VTQF+MK +EK GLIKFDFLGL+T+T+++  LD + ++G    
Sbjct: 537  PMTEFLPLYKG-KKGEIVTQFDMKKVEKVGLIKFDFLGLRTMTVIEDCLDIIREQGKHAP 595

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL  +  DD  TY +     T GIFQ+ESSGMR+ L  ++P+C EDIIA+++LYRPGP+ 
Sbjct: 596  DLDTLALDDPATYDIFAKGDTDGIFQVESSGMRKYLRMLRPNCFEDIIAMLALYRPGPLG 655

Query: 657  NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
              +V  +  RK+G+  +   HP ++  LK T GV++YQEQVM  A +++ YSL E D+LR
Sbjct: 656  MGMVDEFIKRKHGEVAVSYPHPSLEDTLKPTYGVMVYQEQVMATAMIIANYSLGEGDLLR 715

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKKI EEM  Q+ RF+ GA +N I + +A  IF+ + KFA YGFNKSH+AAYA+ISY
Sbjct: 716  RAMGKKIAEEMAMQRARFLEGARENKIDEAVANAIFDTMEKFAAYGFNKSHSAAYALISY 775

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TA++K H+PVEF+AA M+ EM+N EKI  +    R  +I +  P +N     F V D  
Sbjct: 776  HTAYLKAHFPVEFMAALMSTEMNNTEKIVMYINACRDMDITVKQPDINAGQARFSVLDGD 835

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I +++AAIK VG      I+    A  PF  +  FC R++ +++ +RVLESL+ AGALDC
Sbjct: 836  ILFAMAAIKNVGEEAINEIVAERVAGGPFKDIFAFCERINLRRVTKRVLESLIKAGALDC 895

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSV 950
            F  SR  LL+ L+    + Q   K + +   ++     G  +              +   
Sbjct: 896  FSCSRAALLEDLEKAVGFGQKKAKEKESGMLSMLDMLGGASAQAAHTPTCSSCEEFDDRE 955

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            + E E+ VLGF+ SGHPL  Y+  L ++     E+  +   G  +R+A ++   +Q  T+
Sbjct: 956  KLEMEKEVLGFFLSGHPLLAYRHELARLRTATLEDCKSMPNGTEVRVAVIIPDYKQFITK 1015

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
            KG  + + T  +     E    P
Sbjct: 1016 KGDPMAFCTAEDLTTSGEITMLP 1038


>gi|86608659|ref|YP_477421.1| DNA polymerase III subunit alpha [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557201|gb|ABD02158.1| DNA polymerase III, alpha subunit [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 1165

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1045 (36%), Positives = 600/1045 (57%), Gaps = 30/1045 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L +HS YSLL+GA  L  +++++ A   P +A+TD   ++ ALE  +   + GI P
Sbjct: 2    SFVPLHLHSEYSLLDGASQLPRLVEQVVAMGLPGLALTDHGVMYGALELVKLCKSKGITP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
            IIG ++ +   D    + +           V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62   IIGNEMYVINGDIRDKSRKYPK-----YHQVVLAKNTQGYKNLVKLTTISHLHGIQGKGI 116

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   +L +   EGLI+ +G  +G + +A      ++A +    +++ FGD  Y+ 
Sbjct: 117  FSRPCINKEYLVQY-KEGLIVTSGCLAGEVPQAILQRRPEIAREVAAWYQEQFGDDYYIE 175

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR+   Q+V++A    +P++ TN+S F+S  D EAHD L+ +     +++K+
Sbjct: 176  IQDHGYQEDRFVNVQLVRIARELGIPIILTNDSHFISCWDVEAHDALLCIQTGKSLTEKN 235

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R R T   YLK+  EM  +  D    E ++  +    +    ++ +       +      
Sbjct: 236  RLRYTGTEYLKSPEEMRRLCRDHLEQEVIDEAIANTLKVLEKIEGYDLFGEMRMPDYPVP 295

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                 ++ L   A  GL  R   G        Q+Y++RL FELN+I +  FS YFL+V D
Sbjct: 296  PGHSADSYLTELAWQGLAKRC--GVAQPDQIPQNYQERLRFELNIIQQKGFSSYFLVVWD 353

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            ++++A++  IPVGPGRGS AGS+ AYAL IT+IDP+++ LLFERFLNP+R SMPD D DF
Sbjct: 354  YVRYAREQGIPVGPGRGSAAGSLVAYALQITNIDPVKYGLLFERFLNPERQSMPDIDTDF 413

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR E+I YV  KYG ERVAQIITF  + +KA L+DVGR L +PYS+ D++ KLIP  
Sbjct: 414  CIERRGELIDYVTRKYGQERVAQIITFNRMTSKAILKDVGRVLDIPYSEADKMAKLIPVS 473

Query: 483  PAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
               P  L+ +  +      F+E    DP+  R +E+++ LEG  +    HAAG+VI   P
Sbjct: 474  RGKPAKLEEMIGEDTPAPEFKEKYEKDPTTHRWIELARLLEGTNKTFGVHAAGVVIAKDP 533

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597
            L ++VP+  +      +TQ++M+ IE  GL+K DFLGL+ LT++Q++++ + +   V +D
Sbjct: 534  LDEIVPLQYN-NEGQIITQYSMEDIESLGLLKMDFLGLRNLTMIQRAVELIREHNGVNID 592

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  +P DD +TY LL      GIFQLESSGM+Q +  ++P  +EDI ++++LYRPGP+D 
Sbjct: 593  LDNLPLDDKKTYQLLEKGELEGIFQLESSGMKQVVRELKPSNLEDISSVLALYRPGPLDT 652

Query: 658  IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +   + +RK+G++ +   H L+ P+L++T G I+YQEQ+M+IAQ ++GY+L +AD+LRR
Sbjct: 653  GMIPDFIDRKHGRKPVTYAHELLKPILQDTYGAILYQEQIMRIAQDMAGYTLGQADLLRR 712

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK   EM+K +E+F+ GA+K G+S+ +A  +F+ +  FA+Y FNKSH+ AY +I++Q
Sbjct: 713  AMGKKKVSEMEKHREQFVQGAAKRGVSQEVATELFDQMVAFAEYCFNKSHSTAYGLITFQ 772

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K +YP E++AA ++    + +K++++        IQI PP +N   +DF    + I
Sbjct: 773  TAYLKANYPTEYMAALLSSVGGDQDKVQRYITYCLSIGIQIQPPDINRSGMDFTPQGSSI 832

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L A+K VG    ++I+ A  AD PF SL DFC RVD + +NRR LE+L+ AGA DC 
Sbjct: 833  LFGLGAVKNVGEGAIQNILAARQADGPFTSLADFCQRVDLRIVNRRALEALICAGAFDCI 892

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITLEKFSVENS 948
              +R QL+  LD I  +A    K++     ++F            F +            
Sbjct: 893  SGNRKQLIADLDPILSWAAQRAKSKAIGQASLFDLLGSSGSAGNGFVEAPRGPVTEDFPP 952

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              +   E+ +LGFY S HPL   +   R +      +        ++ + A+V + +   
Sbjct: 953  QEKLRLERELLGFYVSDHPLRRIQEQARLLAPVNLADLGGCAADASVGVLALVTAIKNVT 1012

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            T+KG R+  +   +     EA  FP
Sbjct: 1013 TKKGDRMAILQLEDLTGSCEAVIFP 1037


>gi|325507930|gb|ADZ19566.1| DNA polymerase III DnaE [Clostridium acetobutylicum EA 2018]
          Length = 1164

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1059 (35%), Positives = 578/1059 (54%), Gaps = 54/1059 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YSLL+G+  +  ++++       +IAITD   ++  +EF + A   GI+P
Sbjct: 7    DFVHLHVHTEYSLLDGSGKVKKLVERAKELGMKSIAITDHGAMYGCVEFYKAAKEVGIKP 66

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +         +        +VLLV    GY+ L+E+VS   + +      
Sbjct: 67   IIGCEIYVAGKSMHIKHPDAEN---ETYHLVLLVKNEIGYKNLMEIVSTASI-EGFYYKP 122

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+   +L    +EGLI  +    G +      ++ + A+K  L +K+ F D  Y+ LQ H
Sbjct: 123  RVDHEYLMS-HSEGLIASSACFGGEVQSYILKDNLEKAKKAALFYKETFKDGFYLELQYH 181

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D       +V ++   ++PL+ATN+  ++++ED  AHD+L+ +     + +++R R 
Sbjct: 182  ALKDDMKVNDTLVNMSKELDIPLIATNDVHYINKEDSIAHDILLCIQTGKTIDEENRMRY 241

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 YLK++ EM   FS + EAL NT +IA  C+F  + H   LP F   E +D     
Sbjct: 242  APEQFYLKSQEEMYEQFSYVKEALLNTSKIADECNFEYKFHESKLPNFPLPEGEDHY--- 298

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+     GL                  ++RL++EL +I  M +  YFLIV DFI++A
Sbjct: 299  -EYLKKLCYEGLNE-------RYNPITDTIKERLEYELGIIKEMGYVDYFLIVWDFIKFA 350

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++N +P GPGRGS AGS+ AY L IT IDP+++SL+FERFLNPDR+SMPD D DFC + R
Sbjct: 351  RENGVPTGPGRGSAAGSIVAYTLGITKIDPIKYSLIFERFLNPDRVSMPDIDSDFCYENR 410

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +VI YV  KYG + V+QI+TFG++ A+  +RDVGRA+   Y +VD++ K+IPN     +
Sbjct: 411  QKVIDYVVEKYGKDCVSQIVTFGTMAARLCIRDVGRAMNYSYGEVDKIAKMIPNVLNINI 470

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   +     D  +  L++IS+KLEGL RH STHAAG+VI  +PL   VP+ +
Sbjct: 471  D-KALEMNPELKAIYDDDDRIKDLIDISRKLEGLPRHTSTHAAGVVISSQPLVNYVPLLK 529

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
            +   +  V QF M  +E+ GL+K DFLGL+TLT++  ++  + Q R + +D+  I FDD+
Sbjct: 530  N--EESIVAQFTMGILEELGLLKMDFLGLRTLTVINDTIKMVKQNRNIDIDIDDIDFDDY 587

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y ++    T+G+FQLES+GM   ++ ++PD +EDIIA +SLYRPGP++ I  Y   KN
Sbjct: 588  GVYKMIGEGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGISLYRPGPMNEIPRYIRNKN 647

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E+I  + P +  +L  T G IIYQEQVMQI + L+GYS+  +D++RRAM KK    M+
Sbjct: 648  NPEEIKYVTPELKHILDVTYGCIIYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHHVME 707

Query: 727  KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +++  FI             G  KNGIS+ IA  IF+ +  FA Y FNKSHAAAYAV++Y
Sbjct: 708  EERHNFIHGVVDENGNVEVPGCIKNGISEKIANEIFDSMMDFASYAFNKSHAAAYAVVAY 767

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            +TA++  +YP E+LAA +   M N EK+  + + A +  IQ++PP +N     F V ++ 
Sbjct: 768  ETAYLIHYYPAEYLAAMLNSVMGNSEKVAFYIRCAEELKIQVLPPDINGSYSRFTVKEDT 827

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + LAAIK VG      I+ A      F S  DFC+++D+ ++N+R +ES++ +G  D 
Sbjct: 828  IRFGLAAIKNVGFNVIESIVRARNEKGNFISFTDFCNKIDTSEVNKRAVESIIKSGGFDT 887

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVR 951
             G  R +LL   + I        K       N+F    +      +I        +    
Sbjct: 888  LGVYRSKLLAVFEKIMDGISGQRKKNIKGQMNLFTDFVQDDYEEVEIQYPDIKEFDKKYL 947

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-----------------VATIRGNN 994
               E+ + G Y SGHPL+ Y+  L+ M      +                       G  
Sbjct: 948  LAMEKEMTGLYLSGHPLEDYEETLKNMTSIKISDIVAPQSLEDNDGVKLDENTDVQDGTR 1007

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +  +V S  +K TR  + + ++   +     E   FP
Sbjct: 1008 VIIGGIVTSVTKKVTRSNTMMAFIKLEDMYAAIEVVIFP 1046


>gi|254701591|ref|ZP_05163419.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513]
 gi|261752144|ref|ZP_05995853.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513]
 gi|261741897|gb|EEY29823.1| DNA polymerase III subunit alpha [Brucella suis bv. 5 str. 513]
          Length = 1163

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 588/1033 (56%), Positives = 759/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPR   +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRLTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTIT +DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITGVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVS  QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + +   A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|322382903|ref|ZP_08056738.1| DNA polymerase III DnaE-like protein [Paenibacillus larvae subsp.
            larvae B-3650]
 gi|321153172|gb|EFX45627.1| DNA polymerase III DnaE-like protein [Paenibacillus larvae subsp.
            larvae B-3650]
          Length = 1210

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1050 (34%), Positives = 592/1050 (56%), Gaps = 44/1050 (4%)

Query: 17   HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
            HS YSLL+GA  ++++ ++ A     A+A+TD   ++  + F +     GI+PIIGC++ 
Sbjct: 2    HSEYSLLDGAARIHDLTERAAELGMSALALTDHGVMYGTIAFYKACKQRGIKPIIGCEVY 61

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
                   +  N+ + P   +  ++LL     GY+ L++L S  +L +      RI    L
Sbjct: 62   FTTGSIRQKGNRQEQP---IYHLILLAKNNTGYRNLMKLCSIGHL-EGFHYKPRIDAEHL 117

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY- 195
                +EGLI L+      + +    +  + A K    ++ +FG+  Y+ +Q H   ++  
Sbjct: 118  AA-HSEGLICLSACLGSEVSQHLLHDRKEDARKAAERYRSIFGEDFYLEIQDHGMMEQKK 176

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYL 254
                +++L+    +PL+ATN+  ++ E D+E  DVL+ +     V  +DR ++ T   YL
Sbjct: 177  VMHSMIELSRETGIPLIATNDVHYVREPDHEVQDVLICIGTGKTVEDEDRLKMGTSQLYL 236

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
            K R  M ++F+ +PEA+ NT ++A +C   +++   ILP F               L+  
Sbjct: 237  KTREAMAALFAHVPEAVLNTEKVAAQCQVEIELGHSILPSFE---PIPESLTAAEYLKQL 293

Query: 315  AVAG---LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
             + G         +         +   Q+L +EL+VI  M FS YFLIV DFI++A +  
Sbjct: 294  CLEGISGRYGTRQEWNDPSSDFRKQVEQKLYYELDVIESMGFSDYFLIVWDFIRYAHEQG 353

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I  GPGRGS AGS+ AYAL ITD+DP+ ++LLFERFLNP+R++MPD DIDF  +RRDEVI
Sbjct: 354  IMTGPGRGSSAGSLVAYALNITDVDPIEYNLLFERFLNPERITMPDIDIDFNDERRDEVI 413

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             YV  KYG ERVAQIITFG++ AKAA+RDVGR L +PY++VD+  KLIPN     +    
Sbjct: 414  DYVVRKYGKERVAQIITFGTMAAKAAVRDVGRVLNLPYNEVDKAAKLIPNHLGMTIDHA- 472

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
            +  +S  RE     P    LL +++++EG+ RHASTHAAG+VI   PL+  VP+  +   
Sbjct: 473  LEVNSDLRELAEKQPKTAELLNMAKRVEGMPRHASTHAAGVVISRDPLTDYVPLQ-EGTE 531

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYH 610
              P+TQ++M+ +E  GL+K DFLGL+TL++++++L     Q G  VD +     D +TY 
Sbjct: 532  QTPLTQYSMEHLESIGLLKIDFLGLRTLSIIERTLAWIKEQEGKLVDWTQTDKSDPKTYE 591

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T G+FQLES GMR+ L+ ++P   EDII++++LYRPGP++ I  Y   K+ + +
Sbjct: 592  LLSRGETTGVFQLESPGMRRVLKELKPSRFEDIISVLALYRPGPMEFIPQYIACKHKQTE 651

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             V  HP ++ +LK+T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E +D+Q+ 
Sbjct: 652  PVYPHPSLETILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKKREVLDEQRS 711

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ G+   G +   A ++++++ +FADYG+ ++HA AY V+++QTA++K HYP  F+A+
Sbjct: 712  HFVEGSLGQGFTAEEANHVYDMIVRFADYGYPRAHATAYGVLAFQTAYLKAHYPRHFMAS 771

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------------------- 831
             +T    N  K+ ++  + R+  + ++PP +N   V F                      
Sbjct: 772  MLTAVTGNQRKMAEYVDECRRMKLDVLPPDINESGVLFTPVASPGFGTEPARYAGEPAEE 831

Query: 832  --------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                    +  I + LAAIK VG +    +++    + F SL DFC RVD +  N+RV+E
Sbjct: 832  GMADKIPVNGAIRFGLAAIKNVGASAIEAVLKERRKETFTSLLDFCRRVDLRICNKRVIE 891

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            SL+ AGA D     R QL+  LD+  + A    K + +   ++F   +     ++ +   
Sbjct: 892  SLIQAGAFDTLPGHRAQLVAMLDDTAEAALKWRKEKDDLQLHLFGFVEEPHW-EVEVPDV 950

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
             +     + + E+ ++G Y SGHPLD ++ +L ++      +       + + +A MV S
Sbjct: 951  PMLTKLQQLDYERELIGMYLSGHPLDAHEDLLGRLEADPLYQLQEYPDHSEVVVAGMVAS 1010

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +   T++G  + ++   +   + E   FP
Sbjct: 1011 SKTIVTKRGEPMAFMELEDRIAKVEIVLFP 1040


>gi|238926991|ref|ZP_04658751.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
 gi|238885225|gb|EEQ48863.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531]
          Length = 1130

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1034 (36%), Positives = 596/1034 (57%), Gaps = 30/1034 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+GA  +  ++ +       A+A+TD   ++ A+ F ++A A GI P
Sbjct: 2    AFAHLHVHTEYSLLDGASRIKELVCRTKELGMDAVAMTDHGVMYGAVAFYKEAKAQGIHP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +   +      T       ++LL     GY+ L++L+S   + +      
Sbjct: 62   IIGCEVYLAPRQRQERAEVNGTR---YYHLILLAENECGYRNLVQLISLANI-EGYYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            RI    L+    +GLI L+   +G I +A      ++A+  +  +  +FG D  ++ +Q 
Sbjct: 118  RIDKELLRRFH-KGLIALSACVAGEIPQAVLRGDMELADALVREYSGIFGRDNFFLEIQD 176

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +       + +LA  H + LVATN+  +++ ED E HD+L+ V     ++  DR R
Sbjct: 177  HGLPEEKKVNRTLRRLAEKHNIGLVATNDVHYVNTEDSEFHDILLCVQTGRTLNDPDRMR 236

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + PD+YLK+  EM ++F+D P A+ENT +IA RC          LP +           
Sbjct: 237  FSGPDYYLKSEEEMTALFADYPGAIENTAKIAERCQVDFTFGELQLPFYPLPGGYT---T 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +++ LR      +  R             +  QRLD+EL VI +M ++ YFLIV DFI +
Sbjct: 294  DDDYLRALCTERIPARYPAAGN-------EVHQRLDYELGVIHKMGYASYFLIVWDFINY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ + + VGPGRGS AGS+ A+ L IT+IDPLR++LLFERFLNP+R+SMPD DIDF    
Sbjct: 347  ARGHGVAVGPGRGSAAGSIVAFLLGITNIDPLRYALLFERFLNPERVSMPDIDIDFDDIN 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R  VI YV+ +YG + VAQI TFG++ AK A+RDV R L+MP+ +V  + KL+P +    
Sbjct: 407  RGRVISYVKERYGEDHVAQIATFGTMGAKGAIRDVARVLEMPFGEVSTITKLVPAELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ + + FR     D    R++++++K+EGL R+ S HAAG+VI   PL+  VP++
Sbjct: 467  LD-RALKESADFRRRYEEDEEAHRVIDLARKIEGLPRNTSIHAAGVVIAKSPLTSQVPVW 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
              V     VT+++   +E  GL+K DFLGL+TL+++  +++ + Q  GV +++  IP  D
Sbjct: 526  --VSEGTLVTEYDKDDVEALGLLKMDFLGLRTLSIIADAVENIRQSHGVDINMDRIPLID 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
             +T  +L    T  +FQ+ES+GM   ++ +QP    D+I  V+LYRPGP+ + +   + +
Sbjct: 584  EKTSQMLCNGDTGAVFQMESAGMTNLVKELQPKGFVDLIPTVALYRPGPLGSGMVTDFID 643

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
              +GK+ +V +HPL++P+LKET GV++YQEQVMQI Q+L+G++L +AD+LRRAMGKK  E
Sbjct: 644  GLHGKKDVVYMHPLLEPILKETFGVVLYQEQVMQIVQVLAGFTLGQADLLRRAMGKKKHE 703

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  QKE F+ G  KNGI+  +A +IF+LL  FADYGFNKSH+AAY ++++QTA++K HY
Sbjct: 704  LLMAQKEIFLQGCEKNGIAAELANHIFDLLTHFADYGFNKSHSAAYGLLAWQTAYLKAHY 763

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF+A  +T  MD  +KI  + Q   Q  I I+PP +N     F + D  I + LAA++
Sbjct: 764  PVEFMAGVLTSIMDKTDKIPVYIQLCHQMKINILPPDINASTASFSIEDGAIRFGLAAVR 823

Query: 844  GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      +++  A+   F SL +FC+RVD + +N+R +ESL+  GA DC G  R QLL
Sbjct: 824  NVGEAAIGSMVQVRAEGGKFHSLVNFCARVDMRTMNKRAIESLIKCGAFDCLGRERNQLL 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENEQRVLGF 961
             SLD   + A   +++R +    +F+ +      +I          +  R   E+   GF
Sbjct: 884  YSLDFAMQDAARSQRDRMSGQIGLFSSDTMESVQQIQDFPDVPPTTAEERLMWEKEATGF 943

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y +GHPLD Y+  L  +      +           +R+  ++ + ++  T+KG  + +  
Sbjct: 944  YITGHPLDDYRDTLSSL--LPINDIRGELRKDRQLVRIGGILTNTKRYTTKKGDTMLFAE 1001

Query: 1020 FSEPAKEYEANFFP 1033
              + +   E   FP
Sbjct: 1002 MEDFSGRIEVTVFP 1015


>gi|148559880|ref|YP_001258802.1| DNA polymerase III subunit alpha [Brucella ovis ATCC 25840]
 gi|148371137|gb|ABQ61116.1| DNA polymerase III, alpha subunit [Brucella ovis ATCC 25840]
          Length = 1163

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 590/1033 (57%), Positives = 761/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRIVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGGDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVS  QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + +   A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|302385506|ref|YP_003821328.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
 gi|302196134|gb|ADL03705.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
          Length = 1160

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1047 (35%), Positives = 564/1047 (53%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +  ++ +       ++AITD   ++  ++F + A   GI+P
Sbjct: 2    AFTHLHVHTEYSLLDGSCKIKELVARAKELGMDSMAITDHGVMYGVIDFYRAAREVGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +           G         +VLL    +GYQ L+++VS+ + +D      
Sbjct: 62   IIGCEVYVTSGSRFDRETAGGE--DRYYHLVLLAENNQGYQNLMKIVSKGF-VDGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L+E  +EG+I L+   +G + R       +   +  L ++++FG +  ++ LQ 
Sbjct: 119  RVDYEVLREY-SEGIIALSACLAGEVQRLVSRGLYEKGMEAALRYQEIFGKENFFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +      ++++++   + LVATN+  +   ED   HD+L+ +     V+ ++R R
Sbjct: 178  HGIPAQNTVNQGLLRMSHETGIQLVATNDIHYTYAEDATPHDILLCIQTGKKVADENRMR 237

Query: 248  VTPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y     + +   FS   EA++NT  IA RC+  ++     LP++   E  D    
Sbjct: 238  YEGGQYYCKSEDEMRTLFSYAGEAIDNTHRIAERCNVEIEFGVTKLPKYDVPEGYD---- 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L    + G                   ++RLD+EL+VI  M +  YFLIV DFI +
Sbjct: 294  SWSYLNKLCLDGFHRHYP-------LDDGTLKERLDYELDVIHSMGYVDYFLIVWDFIHY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I VGPGRGS AGS+ +Y L IT+IDP+R++LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  ARSQDIIVGPGRGSAAGSIVSYCLGITNIDPIRYNLLFERFLNPERISMPDIDVDFCFER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG ++V QI+TFG+L AK  +RDVGR L M Y++ D + K+IP D    
Sbjct: 407  RQEVIDYVVQKYGKDQVVQIVTFGTLAAKGVVRDVGRVLDMSYARCDSIAKMIPGDLGMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+      R A   DP V  L+++S +LEGL RH S HAAG+VI    + + VP+ 
Sbjct: 467  LE-KALRQSPDLRNAYEGDPEVKYLIDMSMRLEGLPRHTSMHAAGVVISRTSVDEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDD 605
            R        TQF M  +E+ GL+K DFLGL+TLT++Q ++      R + +D+  I ++D
Sbjct: 526  RAA-DGTITTQFPMTTLEELGLLKMDFLGLRTLTVIQNAVKAIEKNRNLSLDMDRIDYND 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                  + T    G+FQLESSGM+  ++ ++P+ +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 585  KAVLDSIGTGRDDGVFQLESSGMKSFMKELKPESLEDIIAGISLYRPGPMDFIPKYLKGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N +  I      ++P+L  T G I+YQEQVMQI + L+GY++  +D++RRAM KK    M
Sbjct: 645  NDRSSITYECKQLEPILNPTYGCIVYQEQVMQIVRDLAGYTMGRSDLVRRAMSKKKTYVM 704

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +K+++ F+         G   NGI + IA  I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 705  EKERQNFVYGNPEEEVTGCISNGIDEKIANQIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YP EF+AA +T  MDNV K+ ++    RQ  I I+PP +N     F V    I Y
Sbjct: 765  FLKYYYPEEFMAALLTSVMDNVSKVSEYILSCRQMGIPILPPDINEGESGFSVSGRSIRY 824

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+AIK VG +    I+     +  F  +EDF  R+ +K++N+R LE+ + +GALD    
Sbjct: 825  GLSAIKSVGKSVVELIVAEREQNGLFHDMEDFIDRMSNKEVNKRTLENFIKSGALDTLPG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q L +   + +      KN       +F  A E+     ++T               
Sbjct: 885  TRKQKLLTAPELLEQRSKERKNTMEGQMTLFDIAGEEEKTHFQVTFPDVGEFLKEDLLAF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQQ 1006
            E+  LG Y SGHP++ Y+   R        E              G+ + +  M+  K  
Sbjct: 945  EKETLGIYLSGHPMEAYETTWRNHITATTIEFVVDEETGKAGVPDGSYVTVGGMITGKTV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K TR    + ++T  + A   E   FP
Sbjct: 1005 KTTRNNKMMAFITLEDLAGAVEVIVFP 1031


>gi|225852339|ref|YP_002732572.1| DNA polymerase III subunit alpha [Brucella melitensis ATCC 23457]
 gi|256264162|ref|ZP_05466694.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 2 str.
            63/9]
 gi|225640704|gb|ACO00618.1| DNA polymerase III, alpha subunit [Brucella melitensis ATCC 23457]
 gi|263094380|gb|EEZ18225.1| DNA polymerase III subunit alpha [Brucella melitensis bv. 2 str.
            63/9]
          Length = 1163

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 590/1033 (57%), Positives = 761/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVS  QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + +   A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAALF 1044


>gi|308068343|ref|YP_003869948.1| DNA polymerase III alpha subunit [Paenibacillus polymyxa E681]
 gi|305857622|gb|ADM69410.1| DNA polymerase III alpha subunit [Paenibacillus polymyxa E681]
          Length = 1225

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/1030 (38%), Positives = 600/1030 (58%), Gaps = 16/1030 (1%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
             SFVHL VHS YSLL+GA     ++ + +A    A+A+TD   ++ A+ F +     GI+
Sbjct: 2    SSFVHLHVHSEYSLLDGAARTAELVKQASAYGMKALALTDHGVMYGAIPFYRACVENGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC+  +      +   +G      +  ++LL     GYQ L++L S  +L +     
Sbjct: 62   PIIGCEAYMTAGSRKE---RGSRKDQPIYHLILLAKNKTGYQNLMKLCSIGHL-EGFHYK 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI +  L     EG+I L+    G + +         A +    ++ +FGD  Y+ LQ 
Sbjct: 118  PRIDMEALAA-HHEGIICLSACLGGEVPQHLLHGREAEARRAAERYRNIFGDDFYLELQD 176

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ R    ++ LA   ++PLVATN+  +L+E D +  DVL+ +     V  ++R R
Sbjct: 177  HGLSEQKRVNPLLIALAKELDIPLVATNDVHYLTEPDADVQDVLICIGTGKTVDDEERLR 236

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T   +LK++ +M  +F  + EA+ NTV IA +C   L+    ILP +           
Sbjct: 237  IPTRQLFLKSQEDMARLFPHVAEAIANTVRIAEKCELELEFGQSILPEY---RPLPEGMT 293

Query: 307  EENELRNKAVAGLEVRL-AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + LRN  V GLE R  +     +    +   QRL +ELN I  M FS YFLIV DFI 
Sbjct: 294  SSSYLRNLCVQGLERRYGSDSRWEQPEERERLNQRLSYELNTIDSMGFSDYFLIVWDFIA 353

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A K+ I  GPGRGS AGS+ AY L IT++DP++++LLFERFLNP+R+SMPD DIDF  +
Sbjct: 354  FAHKHKIATGPGRGSSAGSLVAYVLNITNVDPMKYNLLFERFLNPERISMPDIDIDFSDE 413

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI YV  KYG+E VAQIITFG+L A+AA+RDVGR L +PY +VD+  KLIP     
Sbjct: 414  RRDEVIDYVVQKYGNEHVAQIITFGTLAARAAVRDVGRVLNVPYGEVDKAAKLIPAQLGI 473

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +   A+      +      P    LL+++ K+EG+ RHASTHAAG+VI   PL+  VP+
Sbjct: 474  NI-RHALEITPELKTLYETKPKTRELLDMAIKVEGMPRHASTHAAGVVISRTPLTDAVPL 532

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
              +    +P+TQ++M+ +E+ GL+K DFLGL+TL+++++ + ++A+  G   D S IP +
Sbjct: 533  Q-EGSEGVPLTQYSMENLERIGLLKMDFLGLRTLSIIERCIHWIAEDHGETPDFSRIPDN 591

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY LL    T G+FQLES+G+R+ L+ ++P   EDII++++LYRPGP+  I  +   
Sbjct: 592  DPHTYDLLGKGDTGGVFQLESAGVRRVLKDLKPSVFEDIISVLALYRPGPMGFIPNFIQA 651

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+ +I   HP ++P+LK+T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E 
Sbjct: 652  KHGQIEISYPHPDLEPILKDTYGIIVYQEQIMQIASRMAGFSLGEADLLRRAVSKKKREV 711

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +D ++  F+ G+ K G ++  A  +++++ +FADYGF ++HAAAY V+++QTA++K HYP
Sbjct: 712  LDLERGHFVEGSIKQGYTEEEAGRVYDMIVRFADYGFPRAHAAAYGVLAFQTAYLKAHYP 771

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIK 843
            V+F+A+ +T  M +  K+ ++  + R+ +I ++PP VN   V F       I + LAAIK
Sbjct: 772  VQFMASMLTAVMGSHRKVAEYVVECRRMDITVLPPDVNESGVLFTPLQQGGIRFGLAAIK 831

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
             VGT     I+    ++ FDSL DFC RVD +  N+RV+ESL+ AGA D     R QLL 
Sbjct: 832  NVGTQAMESILAVRKERLFDSLLDFCRRVDLRVCNKRVIESLIQAGAFDSLTGHRAQLLA 891

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             LD     A    K R +   ++F   +    D I        ++S + E E+ +LG Y 
Sbjct: 892  MLDETVDAAVKWRKERDDLQIDMFGFVEMPNWD-IEYPNVPQFSASQQLELERELLGLYL 950

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            SGHPLD ++ +L         E         +  A MVVS +   T++G  + ++   + 
Sbjct: 951  SGHPLDDFESLLESSEADRLMELGDVPDETVVVTAGMVVSLKTITTKQGKAMAFIELEDQ 1010

Query: 1024 AKEYEANFFP 1033
             +  E   FP
Sbjct: 1011 IERCEVVLFP 1020


>gi|153853950|ref|ZP_01995283.1| hypothetical protein DORLON_01274 [Dorea longicatena DSM 13814]
 gi|149753332|gb|EDM63263.1| hypothetical protein DORLON_01274 [Dorea longicatena DSM 13814]
          Length = 1158

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1047 (35%), Positives = 570/1047 (54%), Gaps = 39/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      ++AITD   ++  ++F + A AAGI+P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKECVARVKELGMNSVAITDHGVMYGVIDFYRAARAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +           G +       +VLL     GY  L+++VSR +  +      
Sbjct: 62   ILGCEVYVAPGSRFDKEAVG-SGDDRYYHLVLLAENDLGYHNLMKIVSRGFT-EGYYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+ L  LQE   EG+I L+   +G + +       +  +   L ++ +FG    ++ LQ 
Sbjct: 120  RVDLEVLQEFH-EGIIALSACLAGEVQKNILRGMYEEGKAAALRYQDIFGKGNFFLELQD 178

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++   +Q +++++    + LVATN+  +   ED + HD+L+ +     ++ +DR R
Sbjct: 179  HGMQEQQIVNQSLLRMSQETGIELVATNDVHYTYAEDVKPHDILLCIQTGKKLADEDRMR 238

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  EM  +F    +ALENT +IA RC+  ++     LP++   E       
Sbjct: 239  YEGGQYYIKSEEEMKQLFPYALQALENTQKIADRCNVEIEFGVTKLPKYDVPEG----YT 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GL+ R   G           ++RL++EL+VI  M +  YFLIV DFI +
Sbjct: 295  SWEYLNKLCFDGLKERYPDGD-------DSLKERLEYELSVIKSMGYVDYFLIVWDFINY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I VGPGRGS AGS+ +Y L IT IDP+++ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 348  ARTQGIKVGPGRGSAAGSIVSYCLGITSIDPIKYQLLFERFLNPERVSMPDIDVDFCFER 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG++ A+  +RDVGR + +PY+ VD + K++P +    
Sbjct: 408  RQEVIDYVGRKYGADRVVQIVTFGTMAARGVIRDVGRVMDLPYAFVDSIAKMVPTELNIT 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +  F++    D  V  L+++S++LEGL RH S HAAG+VIG R + + VP+ 
Sbjct: 468  LD-KALKMNPEFKKLYQEDEQVKELIDMSRRLEGLPRHTSMHAAGVVIGQRAIEEFVPLS 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                     TQF M  +E+ GL+K DFLGL+TLT++Q +    +   G  +D++ I +DD
Sbjct: 527  LGS-DGSVTTQFTMTTLEELGLLKMDFLGLRTLTVIQDAERLASISSGKTIDINKIDYDD 585

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                  + T  T G+FQLES+GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 586  KAVLASIGTGKTDGVFQLESAGMKNFMKELKPQNLEDIIAGISLYRPGPMDFIPQYIKGK 645

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  + I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D+LRRAM KK  + M
Sbjct: 646  NNPDSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKGDVM 705

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K+++ F+         G   NGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 706  QKERQNFVYGNPDEGVPGCIANGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 765

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+K +YPVEF+AA MT  +DN  K+ ++    RQ  I+I+PP +N     F V    I Y
Sbjct: 766  WLKYYYPVEFMAALMTSVIDNPGKVSEYIYSCRQMGIKILPPDINKGEGSFSVDGGNIRY 825

Query: 838  SLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LAAIK +G      I++   +   F +L+DF  R+  K++N+R +ES + +GA D  G 
Sbjct: 826  GLAAIKSIGKPVIESIIQERKNGGEFSNLKDFIERLSGKEVNKRTIESFIKSGAFDSLGG 885

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     I        K       ++F    +       I L          +   
Sbjct: 886  TRKQFMVVYVQILDQVNRERKYSMTGQLSLFDIVSDDQKSEFDIPLPDVGEYEKETKLAF 945

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPL+ Y+   +K   +   +              G    +  M+ +K  
Sbjct: 946  EKEVLGVYLSGHPLEDYEEKWKKNISRTTLDFQIDDETGRTKVHDGAKEIVGGMITNKTI 1005

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + ++T  +     E   FP
Sbjct: 1006 KYTKTNKVMAFITLEDLVGSVEVVIFP 1032


>gi|209548886|ref|YP_002280803.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv.
            trifolii WSM2304]
 gi|209534642|gb|ACI54577.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
            trifolii WSM2304]
          Length = 1165

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 640/1031 (62%), Positives = 807/1031 (78%), Gaps = 6/1031 (0%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P F+HL+VHS+YSLLEGAL L  IL K   D QPAIAITDTNNLF ALEFSQKA   G+
Sbjct: 16   TPGFIHLRVHSAYSLLEGALPLKKILYKATGDSQPAIAITDTNNLFIALEFSQKAMDDGL 75

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            QPIIGCQ+ IDM+D L+   +G       +PSIVLL +T  GY+RL+++VSR YL  +  
Sbjct: 76   QPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATDAGYERLVDVVSRAYLGGESN 135

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q++ I  SWL+E GTEGLI LTG  +GP+D A         E RLL  K+LFGDRLYV L
Sbjct: 136  QAIHIRASWLEEAGTEGLIALTGALTGPVDAAIKEGHPAQGEARLLALKRLFGDRLYVEL 195

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            QRH  YD+  E ++V LAY H+LPLVATN + F + +DY+AHD LMAVAH+ +VS   R 
Sbjct: 196  QRHGTYDKRHEQKIVGLAYAHDLPLVATNEAFFPTRDDYDAHDALMAVAHNAIVSDDSRF 255

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQ 304
            R+TPDHYLK+R+EM  +F+DLPEALENT+EIA+RCSF+L+   PILPRF     + ++ +
Sbjct: 256  RLTPDHYLKSRAEMAKLFADLPEALENTIEIAKRCSFVLKTRKPILPRFTGATDDAEEAE 315

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            + E +ELR +AV GL++RLA   ++ GY   DYR+RLDFEL+VI RM+F GYFLIVADFI
Sbjct: 316  RAEASELRRQAVEGLDMRLATLGMSPGYEEMDYRERLDFELSVIERMRFPGYFLIVADFI 375

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK+++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 376  KWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 435

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVIRYVQ KYG E+VAQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA
Sbjct: 436  DRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 495

Query: 485  HPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +P    +AI ++ + +E    +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LV
Sbjct: 496  NPTPLSKAIEEEPKLQEEAAKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 555

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            PMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VDL+ IP 
Sbjct: 556  PMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKVAVDFVAKRGINVDLAAIPL 615

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN 
Sbjct: 616  DDKLTYEMLSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNA 675

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G E++ SIHP+ID +LKETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKIK 
Sbjct: 676  RKHGDEELESIHPMIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKA 735

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EMD+Q+ERF+ GA KNG+SK  A NIFELLAKFA+YGFNKSHAAAYA++SYQTA+MK HY
Sbjct: 736  EMDQQRERFVVGAVKNGVSKPQADNIFELLAKFANYGFNKSHAAAYAIVSYQTAYMKAHY 795

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEFLAASMTL+M N EK+  F QDA++  I+++ PSV T    F+ GDNRIYY+LAA+K
Sbjct: 796  PVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRHFQTGDNRIYYALAALK 855

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            GVG +   HI+E   DKPF  +EDFC R+D +++NRRVLESL+FAGA DCFG  R QL  
Sbjct: 856  GVGESAVDHIVEVRGDKPFAGIEDFCLRIDPRQVNRRVLESLIFAGAFDCFGTDRAQLSA 915

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             LD I  YAQ  ++N+ +   +IF     +  +KI+L  FS   +S R   E +VLGFY 
Sbjct: 916  GLDRILGYAQRAQENKLSGQSDIFGSTLTSGPEKISLPPFSPWLASERLLKEFQVLGFYL 975

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGN--NIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            + HPLD Y  +L+KM ++ + E    I+    N RLA  V+SKQ++KTR G+++G + FS
Sbjct: 976  TAHPLDSYANLLQKMRVQTFAEFSQAIKQGAFNARLAGTVISKQERKTRTGNKMGIIVFS 1035

Query: 1022 EPAKEYEANFF 1032
            + + ++EA  F
Sbjct: 1036 DSSGQFEAVLF 1046


>gi|220928884|ref|YP_002505793.1| DNA polymerase III DnaE [Clostridium cellulolyticum H10]
 gi|219999212|gb|ACL75813.1| DNA polymerase III, alpha subunit [Clostridium cellulolyticum H10]
          Length = 1159

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1056 (35%), Positives = 593/1056 (56%), Gaps = 51/1056 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA  + +++ ++      ++AITD   ++  +EF ++A   GI+PI
Sbjct: 4    FVHLHVHTEYSLLDGANRIKDLIQRVKELGMDSVAITDHGVMYGVVEFYKEAVENGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++    +          + +     +VLL     GY+ L+++VS  +  +      R
Sbjct: 64   LGCEVYTAKRTMQDKQPGIDSDYG---HLVLLAKNQIGYKNLMKIVSLGFT-EGYYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +    L+   +EG+I L+   SG I  A   N  + A +      ++FG    Y+ LQ +
Sbjct: 120  VDYETLERY-SEGIIALSACLSGDIPSAILSNDYEKAVELANRLNRIFGQGNFYLELQHN 178

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++      +++++    +PLVATN++ +L++E  ++H++L+ +     ++  +R R 
Sbjct: 179  GINEQNLVNQHLIKMSGELGIPLVATNDAHYLTKESAKSHEILLCIQTGKTINDDNRMRF 238

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  Y+K+  EM   F ++ +ALENTV+IA  C+  L+     LP F  +E        
Sbjct: 239  NTDEVYVKSPEEMYDNFKNIKQALENTVKIAEMCNVELEFGKLHLPSFDVEEG----YTP 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR +   GL+ R  +        +++   RL++EL+VI++M +  YFLIV DFI++A
Sbjct: 295  YEYLREQCYKGLKSRYGE------SCSEEIVHRLEYELSVISQMGYVDYFLIVWDFIRYA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  +I VGPGRGS AGS+ +YAL IT IDPL+++LLFERFLNP+R+SMPD DIDFC +RR
Sbjct: 349  RDQDIMVGPGRGSAAGSIVSYALGITSIDPLKYNLLFERFLNPERISMPDIDIDFCYERR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RV+QIITFG++ A+A +RDVGRAL +PY  VD + K+IP      +
Sbjct: 409  QEVIDYVIRKYGKDRVSQIITFGTMAARAVIRDVGRALDIPYGDVDAIAKMIPFQIGMNI 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   ++    D     L++ ++ LEGL RHASTHAAG+VI   P+ + VP+  
Sbjct: 469  D-KALELNQELKKRYDTDEETQVLIDTARTLEGLPRHASTHAAGVVISKEPIVEYVPLQL 527

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
            +   +   TQ     +E+ GL+K DFLGL+TLT+++ ++D + Q  G K+D+  I FDD 
Sbjct: 528  N--DNSVTTQVTAVPLEELGLLKMDFLGLRTLTVIRDAVDLVEQGHGRKIDIQQIDFDDK 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y ++    T+G+FQLES+GM Q ++ +QP  +EDIIA +SLYRPGP+D I  Y   KN
Sbjct: 586  DVYKMIGEGRTVGVFQLESAGMTQFMKELQPTSLEDIIAGISLYRPGPMDQIPRYIRNKN 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              + I   HP+++ +L  T G ++YQEQVMQI + L GYS+  +D++RRAM KK    M+
Sbjct: 646  NPKHIRYHHPMLEKILDVTYGCMVYQEQVMQIVRELGGYSMGRSDLVRRAMSKKKISVME 705

Query: 727  KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI             GA KNG+ +  A  IF+ +  FA Y FNKSHAAAYAV++Y
Sbjct: 706  QERKNFIYGITDEEGNEIVKGAVKNGVDEITANKIFDEMMDFASYAFNKSHAAAYAVVAY 765

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTAW+K +YP+EF+AAS+   + + +K+ ++  + +  NI+++PP +N   V F V +  
Sbjct: 766  QTAWLKFYYPIEFMAASINSFLGSSDKVSQYVNECKILNIKVLPPDINESNVKFTVINKN 825

Query: 835  IYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + LAAIK VG    +  I+E   +  F S  DFC R++ + +N+R +ESL+ +GA D 
Sbjct: 826  IRFGLAAIKNVGENAIKSVIVERQQNGEFKSFLDFCQRIEGRDINKRCIESLIKSGAFDS 885

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFSVENSSVRF 952
                R +L+   + +        K   +   +IF          +          ++V  
Sbjct: 886  LKVFRSKLMAVYERLLDGISQNRKKNMDGQLSIFDMMSEPQELLQEDYPDIKEYPANVLL 945

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---------------VATIRGNNIRL 997
              E+ +LG Y SGHPL  Y+ IL         E                        + +
Sbjct: 946  AMEKEMLGLYVSGHPLSEYQDILETNVNLYSSEMFIDTDENSNDIELNSKKLQDSMKVTV 1005

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +VVSK+ K T+  + + +V   +     E   FP
Sbjct: 1006 GGIVVSKKTKATKNNNLMAFVGLEDLYGTMELIVFP 1041


>gi|146341074|ref|YP_001206122.1| DNA polymerase III subunit alpha [Bradyrhizobium sp. ORS278]
 gi|146193880|emb|CAL77897.1| DNA polymerase III, alpha subunit [Bradyrhizobium sp. ORS278]
          Length = 1174

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 533/1037 (51%), Positives = 706/1037 (68%), Gaps = 14/1037 (1%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL VHS+YSLL+G++ +  + +   AD+QPA+A+TDT+N+F ALEFS K   
Sbjct: 1    MSSA-GFVHLHVHSAYSLLKGSIKIAKLGELAKADRQPALALTDTDNMFGALEFSDKMAG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GIQPI GC+L ID  D +    +          IVLL +  EGY+ L+ L SR +L   
Sbjct: 60   YGIQPIAGCELAIDFGD-MDPNARNAGAVAQPSRIVLLAANEEGYRHLMRLNSRAFLETP 118

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              Q+  I   WL E G +GLI LTGG  GPI  A   + + +A +R       FGDRLY+
Sbjct: 119  THQAPHIKFDWLTE-GVDGLIALTGGPDGPISLALQHDMAALAAQRCERLAGQFGDRLYI 177

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH    +R  E  ++ +AY   LPLVATN   F S +DYEAHD L+ +A   +++  
Sbjct: 178  ELQRHGTERERRVEGGLIDIAYDKGLPLVATNEPYFASTDDYEAHDALLCIAGGHLIADT 237

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD-- 301
            DR ++TPDH  K R+EM  +F+DLPEAL +TVEIA RCS+  +   PILP F        
Sbjct: 238  DRVQLTPDHRFKTRAEMAVLFADLPEALASTVEIAERCSYRPRTRKPILPFFTVGAGTGD 297

Query: 302  --DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              D    E  EL+ +A  GLE RL    +A G   +DY++RL FEL+VI RMK++GYFLI
Sbjct: 298  TVDAASAEAAELKRQAEEGLERRLKVHGMAPGMTEEDYQKRLAFELDVIMRMKYAGYFLI 357

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V+DFI+WAK + IPVGPGRGSGAGS+ A+ LTITD+DP+RF+LLFERFLNP+R+SMPDFD
Sbjct: 358  VSDFIKWAKAHGIPVGPGRGSGAGSLVAWVLTITDLDPMRFALLFERFLNPERVSMPDFD 417

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQDRR EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+
Sbjct: 418  IDFCQDRRGEVISYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLV 477

Query: 480  PNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P +PA PV+   AI  + + +  R  DP V R  +I+ +LEGL RHASTHAAGIVIGDRP
Sbjct: 478  PQNPAAPVTLAAAIEGEPKLQAFRDEDPVVARAFDIAMRLEGLTRHASTHAAGIVIGDRP 537

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            LS+LVPMYRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L QR V VDL
Sbjct: 538  LSELVPMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRDVHVDL 597

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD  +Y +L     +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPGP+ NI
Sbjct: 598  ATLPIDDAASYQMLARGDVVGVFQVESQGMRRALIDMRPDRFEDIIALVALYRPGPMANI 657

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  RK+G+E+   +HP+++P+LKET GVIIYQEQVMQ+AQ +SGYSL EAD+LRRAMG
Sbjct: 658  PTYCARKHGEEEPEYLHPILEPILKETFGVIIYQEQVMQVAQQMSGYSLGEADLLRRAMG 717

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KKI+ EMDKQ+ RF+ GA KNG+ K  A  IF+LLAKFADYGFNKSHAAAYA++SY TA+
Sbjct: 718  KKIRAEMDKQRVRFVEGAVKNGVPKDQADTIFDLLAKFADYGFNKSHAAAYALVSYHTAY 777

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            MK HYPVEF+AASMTL+++N +K+ +F  +A++  I++ PPS+N     F+V  N I+Y+
Sbjct: 778  MKAHYPVEFIAASMTLDLNNTDKLSEFRAEAQRLGIKVEPPSINRSGPTFEVSGNTIFYA 837

Query: 839  LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            LAA+KGVG      I+EA     PF SL DF SRV  + +N+R++E+L  AGA DC   +
Sbjct: 838  LAALKGVGPQAIEMIVEARNKGGPFTSLADFASRVSPRAINKRIIETLAAAGAFDCLDKN 897

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R ++    D I    Q   +  T+   ++F +     +  I L        + R   E  
Sbjct: 898  RARVFAGADAIVAACQRANEAATSGQNDMFGNAAD--APAIILPNIENWLPAERLRREYD 955

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRI 1015
             +GF+ SGHPLD Y   L+++ ++ + E   A   G    ++AA VVS+ +++T+ G+++
Sbjct: 956  AIGFFLSGHPLDDYAAALKRLRVQSWAEFSRAVKTGATAGKVAATVVSRMERRTKTGNKM 1015

Query: 1016 GWVTFSEPAKEYEANFF 1032
            G +  S+P   +EA  F
Sbjct: 1016 GIMGLSDPTGHFEAVLF 1032


>gi|163843098|ref|YP_001627502.1| DNA polymerase III subunit alpha [Brucella suis ATCC 23445]
 gi|163673821|gb|ABY37932.1| DNA polymerase III, alpha subunit [Brucella suis ATCC 23445]
          Length = 1163

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 590/1033 (57%), Positives = 762/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF+ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFAALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVS  QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + +   A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|291280374|ref|YP_003497209.1| DNA polymerase III subunit alpha [Deferribacter desulfuricans SSM1]
 gi|290755076|dbj|BAI81453.1| DNA polymerase III, alpha subunit [Deferribacter desulfuricans SSM1]
          Length = 1160

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1047 (38%), Positives = 615/1047 (58%), Gaps = 34/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K   FVHL +H+ YSLL+GA+ ++ ++ K+  +   A+AITD   ++  ++F  +A A
Sbjct: 1    MSK--DFVHLHLHTQYSLLDGAIHISELMQKLKENGSKAVAITDHGTMYGIVDFYTQALA 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              I+PIIGC++ +            K        +VLL  T  G + L  LVS+ ++ + 
Sbjct: 59   NDIKPIIGCEVYVAPDSRFNKNYDKKE--DKNYHLVLLAQTNTGLKNLQYLVSKAHI-EG 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 RI    L +  ++GLI L+   +G   R       + A+K  L + ++ G D  +
Sbjct: 116  FYYKPRIDKELLAK-HSKGLIALSACLAGEPARKLLNEGYEAAKKAALEYYEIMGKDNYF 174

Query: 184  VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q +   ++     ++++++    +PLVATN+  FL+ EDY +H VLM + +   ++ 
Sbjct: 175  LEIQDNGINEQNLVNKKLIEISKETGIPLVATNDCHFLNREDYYSHQVLMCIQYQQTLND 234

Query: 243  KDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             +R    + + Y+K+  EM   F+++ EAL NTV+IA RC+  +      LP +   E  
Sbjct: 235  PNRRDSHSSELYVKSPKEMWKSFNEVEEALINTVKIAERCNVSMTFGELHLPVYDVPEG- 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                  +  L + +  GL  RLA+  +        Y +RL++EL +I    + GY+LIV 
Sbjct: 294  ---YTLKTYLEHISKEGLHKRLAKVPL---ELHSKYYERLEYELKIIHEKGYDGYYLIVW 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI +A+KN IPVGPGRGSGAGS+ AYA+ ITDIDP+++ LLFERFLNP+R SMPDFDID
Sbjct: 348  DFINYARKNKIPVGPGRGSGAGSLVAYAVGITDIDPIKYKLLFERFLNPERKSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RR+EVI YV+NKYGH+RVAQIITFG L A+  +RDVGR L++P   VD++ K+IP 
Sbjct: 408  FCMNRREEVIDYVRNKYGHDRVAQIITFGKLLARGVIRDVGRVLEIPLKTVDKIAKMIPE 467

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P   +  +A+  DS  +    +      LL+ + KLEGL R+A  HAAG+VI D+PL +
Sbjct: 468  KPGLTLK-KALEMDSELKPNIESIEKGKELLDHALKLEGLLRNAGMHAAGVVIADKPLVE 526

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSL 600
             VP+ +  ++D  VTQF    +EK GL+KFDFLGLK LT++  +   + +      D+S 
Sbjct: 527  YVPLCKG-QNDEVVTQFEKDTLEKVGLVKFDFLGLKNLTVIDYASKLIRETKDSDFDISS 585

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNI 658
            IP DD +T+ LL++  T G+FQLESSGM+  L+ ++P   EDIIALV+LYRPGP     +
Sbjct: 586  IPLDDKKTFELLSSGETTGVFQLESSGMKNLLKKLKPTTFEDIIALVALYRPGPIGSGML 645

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G +++    P ++ +LKET G+I+YQEQVMQIAQ+++GYSL  AD+LRRAMG
Sbjct: 646  DDFVKRKHGLQEVTYPLPELEEILKETYGIIVYQEQVMQIAQIVAGYSLGSADLLRRAMG 705

Query: 719  KKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            KK  EEM K +E F+         GA K G  + IA  IF+L+AKFA+YGFNKSH+AAYA
Sbjct: 706  KKKPEEMAKHREIFLYGDEKLGIEGAVKRGFDEKIASEIFDLMAKFAEYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTA++K HYPVE++AA ++ E++  +K+  F  + ++  I+++ P +N    DF +
Sbjct: 766  MVSYQTAYLKAHYPVEYMAALLSNELEKGDKVVGFIDECKKMGIKVLKPDINESFRDFII 825

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              + I + L AIK VG      I++    +  + S+ D C RVD + +NR+VLESL+ AG
Sbjct: 826  TGDSIRFGLGAIKNVGFGAIDEIIKERKTNGKYKSIYDLCKRVDLRTVNRKVLESLIKAG 885

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK---HENIFAHEKGTFSDKITLEKFSVE 946
            ALD FG +R Q LQ LD+  +  Q  ++ +       E+I         ++         
Sbjct: 886  ALDSFGKNRRQHLQVLDDAIESGQKEQQLKNEGIITIEDILKENGIDEIEEEHYPDVEEM 945

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
              +   + E+ VLGFY + HPL  Y  IL     K   +   T   N I +  +V   + 
Sbjct: 946  PENELLKFEKEVLGFYLTNHPLVNYSNILDIF-TKRSSDIETTDENNLIMVGGIVKGVKN 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              T+   R+ +VT  +     +   FP
Sbjct: 1005 YITKTNERMAFVTLEDLEGTMDVVVFP 1031


>gi|166032119|ref|ZP_02234948.1| hypothetical protein DORFOR_01822 [Dorea formicigenerans ATCC 27755]
 gi|166027842|gb|EDR46599.1| hypothetical protein DORFOR_01822 [Dorea formicigenerans ATCC 27755]
          Length = 1156

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1047 (36%), Positives = 572/1047 (54%), Gaps = 39/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      ++AITD   +F  ++F + A A GI+P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKECVARVKELGMNSVAITDHGCMFGVIDFYRAARAQGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +           G +       +VLL    EGY  L+++VSR Y  +      
Sbjct: 62   ILGCEVYVAPGSRFDKEAVG-SGDDRYYHLVLLAENDEGYHNLMKIVSRGYT-EGYYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+ L  L+E   EG+I L+   +G + +              L ++++FG    ++ LQ 
Sbjct: 120  RVDLELLREFH-EGIIALSACLAGEVQKNITRGMYSEGRAAALRYEEIFGKGNFFLELQD 178

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++      +++++    + LVATN+  +   ED  AHD+L+ +     ++ +DR R
Sbjct: 179  HGIPEQQTVNQALMRMSQETGIELVATNDIHYTYAEDARAHDILLCIQTGKKLADEDRMR 238

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  EM  +F    +ALENT +IA RC   ++     LP++   +       
Sbjct: 239  YEGGQYYIKSEEEMKKLFPYALQALENTQKIADRCDVEIEFGVTKLPKYDVPDG----LS 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GLE R           +QD + RLD+EL+VI +M +  YFLIV DFI +
Sbjct: 295  SWEYLNKLCYEGLERRYPN-------PSQDLKDRLDYELSVIHKMGYVDYFLIVWDFIHY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I VGPGRGSGAGS+ AY L IT IDP+++ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 348  ARSQKIMVGPGRGSGAGSIVAYCLEITSIDPIKYQLLFERFLNPERVSMPDIDVDFCYER 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG+L A+  +RDVGR + +PY+ VD + KLIP +    
Sbjct: 408  RQEVIDYVGRKYGADRVVQIVTFGTLAARGVIRDVGRVMDLPYAFVDNIAKLIPKELNIT 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+   S  R++   DP V  L+++S +LEGL RH S HAAG+VI  +P+ + VP+ 
Sbjct: 468  LD-KALKTSSELRKSYEEDPQVKELIDMSMRLEGLPRHTSMHAAGVVISQKPVEEYVPLS 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDD 605
                     TQF    +E+ GL+K DFLGL+TLT+++ +  F     G +++++ I FDD
Sbjct: 527  LGS-DGSVTTQFVATTLEELGLLKMDFLGLRTLTVIRDAEKFASYSSGKEININKINFDD 585

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                  + T  T G+FQLES+GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 586  KAVLDSIGTGKTDGVFQLESAGMKNFMKELKPQSLEDIIAGISLYRPGPMDFIPQYIKGK 645

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
               E I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D++RRAM KK  + M
Sbjct: 646  EHPELITYDCPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKKADVM 705

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K+++ F+         G   NGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 706  AKERQNFVYGNPEEGVPGCIANGIDEKTANKIYDEMTDFAKYAFNKSHAAAYAVVSYQTA 765

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+K +YPVE++AA MT  +DN  K+ ++    RQ  I+I+PP +N     F V +  I Y
Sbjct: 766  WLKYYYPVEYMAALMTSVIDNPGKVAEYIYSCRQMGIKILPPDINHGYSSFSVDNGSIRY 825

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LAAIK +G    + I+     +  F +L+DF  R+  K +N+R +E+ + +GA D  G 
Sbjct: 826  GLAAIKSIGRPVIKEIVAERKANGEFKNLKDFIERMSGKDINKRTIENFIKSGAFDELGG 885

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     I       +KN       +F    E+      I L        S +   
Sbjct: 886  TRKQFMVIYVQILDQVNREKKNSMTGQMTLFDIVGEEQKSEFDIPLPNVGEYEKSTKLAF 945

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHP++ Y+   RK   K  ++              G    +  ++ SK  
Sbjct: 946  EKEVLGIYLSGHPMEEYEEQWRKGISKTTQDFQFDEELGFSRVSDGAAEIIGGIIASKTI 1005

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + ++T  +     E   FP
Sbjct: 1006 KYTKNNKTMCFLTIEDIMGSVEVVVFP 1032


>gi|254713932|ref|ZP_05175743.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1]
 gi|254717010|ref|ZP_05178821.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1]
 gi|261218817|ref|ZP_05933098.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1]
 gi|261321684|ref|ZP_05960881.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1]
 gi|260923906|gb|EEX90474.1| DNA polymerase III subunit alpha [Brucella ceti M13/05/1]
 gi|261294374|gb|EEX97870.1| DNA polymerase III subunit alpha [Brucella ceti M644/93/1]
          Length = 1163

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 589/1033 (57%), Positives = 760/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVS  QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKG G     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGAGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + +   A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|323700171|ref|ZP_08112083.1| DNA polymerase III, alpha subunit [Desulfovibrio sp. ND132]
 gi|323460103|gb|EGB15968.1| DNA polymerase III, alpha subunit [Desulfovibrio desulfuricans ND132]
          Length = 1184

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1050 (39%), Positives = 611/1050 (58%), Gaps = 36/1050 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA+ +N++L +      PA+AITD  ++F A+ F   A   GI+PI
Sbjct: 4    FVHLHVHTEYSLLDGAIRINDLLTRAKDLGMPAVAITDHGSMFGAVVFYMAAKELGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +   D        +        ++LL     GY+ LI+LVS  YL D      R
Sbjct: 64   IGCEVYVAEGDVDDEEAHLRKEHGGGYHLILLAKNQRGYKNLIKLVSTGYL-DGFYYKPR 122

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    L++  +EGLI L+   +G I R       +       T++ +F    Y+ LQ + 
Sbjct: 123  VSKHLLKKY-SEGLIALSACLAGEIPRKLMNEGLEAGADMARTYESIFPGNFYLELQDNG 181

Query: 191  GYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
               + R ++++ + A    LPLVATN+  +L+ ED+EAHD L+ +   T V  + R R+ 
Sbjct: 182  IGKQTRLNELLVKCAEKTGLPLVATNDCHYLTAEDFEAHDTLLCIQTQTTVDAEKRFRME 241

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + Y K   EM   F+ +PEA+ NT  IA +C+  +++     P +   E   +     
Sbjct: 242  TKELYFKTPEEMEKAFAHVPEAILNTQRIAEQCNLEIELGNYYFPEYKLPEGVSMN---- 297

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             E       GL+ RL    I        Y +RLD+EL VI +M F  YFLIV DFI WAK
Sbjct: 298  EEFERLCREGLQRRL--NTITYEVDEGKYWKRLDYELGVIKQMGFPAYFLIVQDFINWAK 355

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             + IPVGPGRGS AGS+ A++L IT++DPL + LLFERFLN +R+SMPD D+DFC+ RR 
Sbjct: 356  DHRIPVGPGRGSAAGSIVAWSLKITNLDPLPYDLLFERFLNVERVSMPDIDVDFCERRRL 415

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP----- 483
            EV++Y   KYG +RVAQI TFG+++ KA ++DVGRAL M + + DR+ KLIP+DP     
Sbjct: 416  EVVKYCAEKYGVDRVAQITTFGTMKTKAVIKDVGRALGMSFGETDRIAKLIPDDPAVMAK 475

Query: 484  ------AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                  A      A+   +   +    DP V +L++IS +LEGL RHASTHAAG+VI ++
Sbjct: 476  LLGVEKAKITVPNAVKAVTELDDMVATDPKVAKLIDISTRLEGLCRHASTHAAGVVISNK 535

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKV 596
            P+++ +P+Y+  +    VTQF+MK +EK GLIKFDFLGL+T+T+++  LD + ++     
Sbjct: 536  PMTEYLPLYKG-KKGEIVTQFDMKKVEKVGLIKFDFLGLRTMTVIEDCLDIIREQGKKAP 594

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI- 655
            DL  +  DD ET+ +     T GIFQ+ESSGMR+ L  + PDC EDI+A+++LYRPGP+ 
Sbjct: 595  DLETLHLDDPETFAIFAKGDTDGIFQVESSGMRKYLRMLGPDCFEDIVAMLALYRPGPLG 654

Query: 656  -------DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
                     +  +  RK+G+  +   HP ++  LK T GV++YQEQVM  A +++ YSL 
Sbjct: 655  MIGSHGVSMVDEFIMRKHGEIAVTYPHPSLEETLKPTYGVMVYQEQVMATAMVIANYSLG 714

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E D+LRRAMGKKI EEM KQ+ RF+ G+ +NGI   +A +IF+ + KFA YGFNKSH+AA
Sbjct: 715  EGDLLRRAMGKKIAEEMAKQRSRFLEGSRENGIDDAVANDIFDTMEKFAAYGFNKSHSAA 774

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+ISY TA++K H+PVEF+AA M+ EM+N +KI  +    R  +I +  P +N     F
Sbjct: 775  YALISYHTAYLKAHFPVEFMAALMSTEMNNTDKIIMYVNACRDMDITVRQPDINAGQARF 834

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V +  I +++AAIK VG      I+   A+  PF ++ DFC RV+ +++ +RVLESL+ 
Sbjct: 835  SVKNGEILFAMAAIKNVGEEAINEIVAERAEQGPFLNIFDFCERVNLRRVTKRVLESLIK 894

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKF 943
            AGALDCF  SR  LL+ LD      Q   K + +   N+        K   + + T    
Sbjct: 895  AGALDCFSCSRAALLEDLDKAVALGQKKAKEKESGMLNMLDLLGGGGKSDATAQPTCSLC 954

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                   + + E+ VLGF+ SGHPL  Y+  ++++     E+      G  +R+A ++  
Sbjct: 955  EEFEDREKLQLEKEVLGFFLSGHPLLAYRHDMQRLRTVTLEDCKTIPNGTEVRVAVIIPD 1014

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +Q  TRKG  + +    +     E    P
Sbjct: 1015 FKQHITRKGDPMAFCNAEDLTTYGEITMLP 1044


>gi|18309342|ref|NP_561276.1| DNA polymerase III DnaE [Clostridium perfringens str. 13]
 gi|18144018|dbj|BAB80066.1| DNA polymerase III, subunit alpha [Clostridium perfringens str. 13]
          Length = 1192

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1078 (35%), Positives = 599/1078 (55%), Gaps = 67/1078 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +HS YSLL+G+  +  ++ +       +IA+TD   ++  ++  ++A A GI+PI
Sbjct: 6    FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +  +     +N           +VLLV   +GY+ L+++VS   + +      R
Sbjct: 66   LGCEVYVVPKSRKIKSNDEDN---KTYHLVLLVKNEKGYENLMKIVSVASI-EGFYYKPR 121

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   +L+E  +EG+I L+    G + +A    +   A +  + ++  F D  Y+ LQ H 
Sbjct: 122  IDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAAIFYRDTFKDGFYLELQNHG 180

Query: 191  GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
              ++ + ++V +QLA    +PLVATN+  ++++ED +AHD+LM +     V   +R R  
Sbjct: 181  IEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRYP 240

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   YLK+  EM  +F  +PEALENT++IA  C+F  + H   LP+F   E      E  
Sbjct: 241  SDQFYLKSPEEMWDMFDYIPEALENTLKIAEECNFDYEFHVSKLPKFPLPEGV----EPF 296

Query: 309  NELRNKAVAGLEVRLAQGAI-------------AKGYHAQDYR---QRLDFELNVIARMK 352
              LR     GL  RL +                  G +    +   +RL++EL VI +M 
Sbjct: 297  EYLRKTCFDGLIDRLEELKPLKEKGIYDIDKVYEIGENNDKVKEDIERLEYELGVIKQMG 356

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            +  YFLIV DFI++A  N IP GPGRGS AG++ AY L IT IDP+++SLLFERFLNP+R
Sbjct: 357  YVDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERFLNPER 416

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPD D DFC + R  VI YV  KYGH+ V+QIITFG++ A+A +RDVGRA+   Y++V
Sbjct: 417  VSMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMNYTYAEV 476

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            DR+ K IP      +  +A+  +   +     +  V  L+++S++LEGL RH+STHAAG+
Sbjct: 477  DRIAKQIPTVLGVTID-KALDLNPELKTIYDTEERVRELIDVSRRLEGLPRHSSTHAAGV 535

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-Q 591
            VI  +PL + VP+ ++   +  VTQF+M  +E+ GL+K DFLGL+TLT+++ ++D +   
Sbjct: 536  VIASQPLVEYVPLQKN--DESIVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAVDMIKYN 593

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            RGV +DL  + FDD E Y ++    T+G+FQLES+GM   ++ ++PDC+EDIIA +SLYR
Sbjct: 594  RGVDIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIAGISLYR 653

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+  I  Y + K   + +  I P ++ +L  T GV++YQEQVM+I + L+GYS+  +D
Sbjct: 654  PGPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGYSMGRSD 713

Query: 712  VLRRAMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADY 759
            ++RRAM KK  + M+++++ FI             G  +NGIS   A  IF+ +  FA Y
Sbjct: 714  LVRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSMMDFASY 773

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSHAAAYAVI +QTA++  +YPVEFLAA +   M N +K+ ++ + A +  IQ++PP
Sbjct: 774  AFNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLGIQVLPP 833

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
             +N     F V  + I + + AIK VG     +I ++      F SL DFC+++D   +N
Sbjct: 834  DINESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGKFTSLMDFCNKIDLSIVN 893

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSD 936
            +R +ESL+ AG  D     R QLL   + I        K   +   ++F    E+   + 
Sbjct: 894  KRSVESLIKAGTFDSLKVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFGALQEESESNL 953

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------- 988
            +I        N       E+ + G Y SGHPLD Y+  L++      E+ +         
Sbjct: 954  EIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKEQTSITIEKIIEAQKNLNEQ 1013

Query: 989  -------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                            G  + +  ++ +  +K TR  + + +    +     E   FP
Sbjct: 1014 KNVELEDLVLDSSLTDGTRVIIGGILTNVSRKVTRNNTLMAFAKVEDLTGYLECVIFP 1071


>gi|315652846|ref|ZP_07905820.1| DNA-directed DNA polymerase III alpha subunit [Eubacterium saburreum
            DSM 3986]
 gi|315485048|gb|EFU75456.1| DNA-directed DNA polymerase III alpha subunit [Eubacterium saburreum
            DSM 3986]
          Length = 1152

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1046 (35%), Positives = 573/1046 (54%), Gaps = 37/1046 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +  I+ +       ++AITD   ++  ++F ++A A GI+P
Sbjct: 2    SFTHLHVHTGYSLLDGSCKIKEIISRAKKLNMASLAITDHGVMYGVIDFYKEAKANGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +      +   +          ++LL    +GY+ L ++VS+ +  +      
Sbjct: 62   ILGCEVYVSPSSRFEKQAKQG---DRYYHLILLAKNNKGYENLTKIVSKGFT-EGFYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            RI    L+E   EG+I L+   +G I +       + A+K    +K LFG D  Y+ LQ 
Sbjct: 118  RIDFELLKEYH-EGIIALSACLAGEIPKLISRGREEEAKKVAKKYKDLFGEDNFYLELQN 176

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++      +V++    ++PLVATN+  +++ ED +AHD+L+ +     VS  DR R
Sbjct: 177  HGIPEQKFVNQSLVKIGKELDIPLVATNDIHYINAEDAKAHDILLCIQTGKTVSDPDRMR 236

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  +LK+  EM ++F   PEA+ENT +IA  C+  ++     LP +           
Sbjct: 237  YEGGQFFLKSEDEMKALFPYAPEAVENTGKIADMCNVEIKFGETKLPEYPVPN----NLS 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L +   +G E    +       + ++  +R+ +EL VI  M +  YFLIV D+I +
Sbjct: 293  AREYLESLCKSGFERNYPKDY----ENREEIEKRMYYELGVIETMGYIDYFLIVWDYINY 348

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I VGPGRGS AGSV +Y L ITDIDP++++L+FERFLNP+R+SMPD D+DF  +R
Sbjct: 349  ARSVGISVGPGRGSAAGSVVSYCLGITDIDPIKYNLIFERFLNPERVSMPDIDVDFADER 408

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG ERV QIITFG+LQA+  +RDVGRA+++PY++ D + K+IP D    
Sbjct: 409  RGEVIDYVVGKYGSERVCQIITFGTLQARGVIRDVGRAMEIPYARCDSIAKMIPRDKDIT 468

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +S  A+  +   +E   +D  V  L++ S KLEGL RHAS HAAG+VI  + + + VP+ 
Sbjct: 469  LS-LALERNKELKELYDSDEVVHELIDYSLKLEGLPRHASIHAAGVVISKKAVDEYVPLA 527

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                 D   TQF M  +E+ GL+K DFLGL+TLT+LQ +L+ + +   V +DL  I + D
Sbjct: 528  LG-IDDAVTTQFTMTTLEELGLLKMDFLGLRTLTVLQNALEMIKKNHGVDIDLKKIDYSD 586

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             + Y  ++T  T  +FQLES GM+  ++ ++P+ +EDIIA +SLYRPGP+D I  Y + K
Sbjct: 587  KKVYEFISTGKTDAVFQLESGGMQNFMKRLKPENLEDIIAGISLYRPGPMDFIPKYIDGK 646

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N K K+    P +  +L+ T G I+YQEQVMQI + L+GY++  +D +RRAM KK    M
Sbjct: 647  NSKGKVSYDTPKLISILEPTYGCIVYQEQVMQIVRDLAGYTMGGSDEVRRAMSKKKAHVM 706

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            + +++ FI         G  KNGI + +A  IF+ +  FA Y FNKSHAA YAVISYQTA
Sbjct: 707  EMERKNFIYGNEEKKIKGCIKNGIDEKVANRIFDEMIDFASYAFNKSHAACYAVISYQTA 766

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YP EF+AAS+T   DN  K+ ++        I+I+PP VN     F V  + I +
Sbjct: 767  YLKYYYPKEFMAASLTSVSDNPAKLSEYMGSLTDMGIKILPPDVNLGEGAFSVDKDGIRF 826

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LA IKGVG   A  ++     +  + +LE+F +R+  K LN+R +ES + AGALD    
Sbjct: 827  GLATIKGVGKAVADVLVRERTLNGRYLTLENFINRLPQKDLNKRSIESFIKAGALDGLAG 886

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFEN 954
            +R + + + + +        K       + F        D     +            + 
Sbjct: 887  NRHEKILNAELLIDKKSKESKAVIPGQISFFDVVDKDDRDSFVSEMIHIDEYKKEELLKY 946

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-------GNNIRLAAMVVSKQQK 1007
            E  VLG Y SGHPL+ Y  +L K       +             G  + +  ++    ++
Sbjct: 947  EMEVLGMYVSGHPLEEYITMLEKYTDVRSIDFYPDEDGNILIESGRKVVVGGLLSEVNKR 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T+KG  +   T  +     E   FP
Sbjct: 1007 FTKKGDMMAICTLEDMYGRIELVVFP 1032


>gi|258621011|ref|ZP_05716045.1| DNA polymerase III subunit alpha [Vibrio mimicus VM573]
 gi|258586399|gb|EEW11114.1| DNA polymerase III subunit alpha [Vibrio mimicus VM573]
          Length = 1159

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/1048 (41%), Positives = 621/1048 (59%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VHS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG    +          Q +     +  + +L     GY+ L  L+S+ YL   
Sbjct: 60   CGIKPIIGADFTL----------QSEEFGDELTKLTVLAKNNVGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  +WL E   EGLI+L+GG SG I RA    + Q  EK L  ++  F D  Y+
Sbjct: 110  VQHQPVIDKAWLME-HAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        ++LA  +ELP+VATN  +F++EE +EAH++ +A+     +   
Sbjct: 169  ELVRTGRADEESYLHFALELAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL++ +EM  +F+D+PEALEN+VEIA+RC+  +++       +       
Sbjct: 229  RRPKNYSPKQYLRSEAEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 284  EGMAIEDFLVMKSREGLEERLEFLFPDPEVRAQRRPEYDERLQIELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +    IA +   +E   AD  V  L++  + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K+   
Sbjct: 523  TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKMGQP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVRIEAIPLDDTRSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V DN  I Y + AIKGVG      I+EA   D  F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + AGALD  G  R  ++ S+D+  + A    +       ++F        + +    +  
Sbjct: 883  ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQTDMFGVLTDAPEEVEQKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ 
Sbjct: 943  EWPEKVRLEGERETLGLYLTGHPVDEYLKELVKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   +
Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|82523671|emb|CAI78453.1| DNA polymerase III, alpha subunit [uncultured candidate division WS3
            bacterium]
          Length = 1160

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/1035 (37%), Positives = 592/1035 (57%), Gaps = 27/1035 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              FVHL  HS YSLL+GA  ++ ++ +    + PA+AITD  ++F A+EF  +A   GI+
Sbjct: 4    SDFVHLHNHSQYSLLDGACRIDRMVQRALEFRMPALAITDHGSMFGAIEFYSEAREHGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG +  +    + +          +   ++LL+  AEGY+ L++L S  Y +D     
Sbjct: 64   PIIGMEAYVTPGSHAEKP--AGKGMESYSHLLLLIRNAEGYRNLMKLSSASY-VDGFYYK 120

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQ 187
             R+    L++ G +GL+  T    G   +     +   A + ++   ++FGD  +Y+ + 
Sbjct: 121  PRVDKELLRKYG-DGLLACTACLKGEPAQHVLAGNEDAARESIIELVEIFGDGHVYLEVH 179

Query: 188  RHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   +     Q  V+L     +PLVA N+  ++  E   AHDVL+ +     + + +R 
Sbjct: 180  NHGMPEEAVIRQAYVRLGRELGVPLVAANDCHYVRREQAAAHDVLLCIQTGREIDEPNRM 239

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R+   + Y+K+  EM  +F D P A ENT+E+A +C+  L      +P F   +      
Sbjct: 240  RMPNDEFYMKSPEEMRELFLDCPGAYENTIEVAEKCNLQLDFDHVHMPEFPIPQGYT--- 296

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +    L      GLE               +   R   EL++I +M F+GYFLIV DFI 
Sbjct: 297  DAAAHLEALTREGLEE-------RYETVTPEVEARAALELSMIGQMGFAGYFLIVHDFIH 349

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
             A++  IPVGPGRGS A S+ +YAL IT++DPL F L+FERFLNP R SMPDFDIDFC +
Sbjct: 350  EARRRGIPVGPGRGSAAASIVSYALGITELDPLEFGLVFERFLNPARKSMPDFDIDFCYE 409

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+E+I YV  KYG E VAQIITFG++QA+AA+RDVGR L+ PYS+VDR+ K++P +   
Sbjct: 410  RRNEIIEYVTEKYGRESVAQIITFGTMQARAAIRDVGRVLKFPYSEVDRVAKMVPRELNI 469

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+A     +  R +D    +LL+ +  LEGL RHAS HAAG++I    +    P+
Sbjct: 470  TLE-EALAKTPELKALRDSDERYAKLLDYAGDLEGLARHASVHAAGVIIAPGRIDDWAPL 528

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
            YR        TQ+ M  + + GL+KFDFLGL+TLT++  +L  + + RG+ +    IP D
Sbjct: 529  YR-SNKGEITTQYPMNSLARIGLLKFDFLGLRTLTVIHDALAMIRENRGIDLAPDRIPLD 587

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662
            D ETY LL T  T+GIFQ+ESSGMR  L  ++P+ +ED+ A+ +L+RPGP+ + +   Y 
Sbjct: 588  DPETYELLGTGHTVGIFQVESSGMRDLLRKVRPERLEDMTAVNALFRPGPLGSGMVDDYV 647

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G++K+  IHP + P+L+ET GV+ YQEQVMQI+  L+G+S+S+ADVL  AM KK+ 
Sbjct: 648  KRKHGRQKVSYIHPKLAPVLEETYGVMAYQEQVMQISSALAGFSMSQADVLLNAMRKKVV 707

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E+M  Q+E F++G  +NGIS+ IAV +F+ +  F+ YGFNK H+A YAV++ +TA++KTH
Sbjct: 708  EQMATQREDFLAGCRENGISERIAVKVFDQMEFFSGYGFNKPHSACYAVLAVRTAYLKTH 767

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAA 841
            +  EF+AA++T EMDN +++     + R+  I+++PP VN   V+F+      I + L+A
Sbjct: 768  FAPEFMAATLTSEMDNSDRVVALTGECRRLGIRVLPPDVNEGHVEFRATSRGDIQFGLSA 827

Query: 842  IKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +K VG    R ++ A      F+ + D  SRVD + +NRRVLESLV AGALD     R Q
Sbjct: 828  VKNVGRAAVRSMVAARREHGSFEDVFDLTSRVDLRLVNRRVLESLVAAGALDGLHGHRAQ 887

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENI---FAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
              +++       Q  +++R +   ++      + G+      L + +     V    E+ 
Sbjct: 888  QYEAIGAALDLGQRAQRDRDSGQTSLMDILDTDAGSELRPRRLPEATPWPDGVALAKEKE 947

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            VLG Y SGHPL  Y+  L         +    +    +RL  ++   +    RKG ++ +
Sbjct: 948  VLGMYVSGHPLARYEKELSTFATATTMDLAEMVDDEPVRLGGIITHVKTTADRKGEQMAF 1007

Query: 1018 VTFSEPAKEYEANFF 1032
            VT  +     E   F
Sbjct: 1008 VTLEDFTGSVELVVF 1022


>gi|237815260|ref|ZP_04594258.1| DNA polymerase III, alpha subunit [Brucella abortus str. 2308 A]
 gi|237790097|gb|EEP64307.1| DNA polymerase III, alpha subunit [Brucella abortus str. 2308 A]
          Length = 1190

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 588/1033 (56%), Positives = 759/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 41   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 100

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 101  GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 160

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 161  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 219

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + F   ED+EAHD L+A+A   ++S  D
Sbjct: 220  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFPKAEDFEAHDALLAIAEGQILSNDD 279

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 280  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 339

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 340  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 399

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 400  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 459

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 460  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 519

Query: 483  PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVS  QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 520  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 579

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 580  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 639

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 640  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 699

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 700  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 759

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 760  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 819

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 820  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 879

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IK VG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 880  IKSVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 939

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 940  CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 998

Query: 962  YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + +   A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 999  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1058

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1059 LSDASGQFEAVLF 1071


>gi|62289774|ref|YP_221567.1| DNA polymerase III subunit alpha [Brucella abortus bv. 1 str. 9-941]
 gi|82699702|ref|YP_414276.1| DNA polymerase III subunit alpha [Brucella melitensis biovar Abortus
            2308]
 gi|189024017|ref|YP_001934785.1| DNA polymerase III subunit alpha [Brucella abortus S19]
 gi|254697213|ref|ZP_05159041.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str.
            86/8/59]
 gi|254730110|ref|ZP_05188688.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292]
 gi|260545478|ref|ZP_05821219.1| DNA polymerase III subunit alpha subunit [Brucella abortus NCTC 8038]
 gi|260757800|ref|ZP_05870148.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292]
 gi|260761623|ref|ZP_05873966.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str.
            86/8/59]
 gi|62195906|gb|AAX74206.1| DnaE-2, DNA polymerase III, alpha subunit [Brucella abortus bv. 1
            str. 9-941]
 gi|82615803|emb|CAJ10801.1| Phosphoesterase PHP, N-terminal:PHP domain C-terminal region:OB-fold
            nucleic acid binding domain:DNA polymerase III alpha sub
            [Brucella melitensis biovar Abortus 2308]
 gi|189019589|gb|ACD72311.1| DNA polymerase III subunit alpha [Brucella abortus S19]
 gi|260096885|gb|EEW80760.1| DNA polymerase III subunit alpha subunit [Brucella abortus NCTC 8038]
 gi|260668118|gb|EEX55058.1| DNA polymerase III subunit alpha [Brucella abortus bv. 4 str. 292]
 gi|260672055|gb|EEX58876.1| DNA polymerase III subunit alpha [Brucella abortus bv. 2 str.
            86/8/59]
          Length = 1163

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 588/1033 (56%), Positives = 759/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + F   ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFPKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPEALENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPEALENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVS  QAI  + +  E R  +P V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKEPVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IK VG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKSVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + +   A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|168204460|ref|ZP_02630465.1| DNA polymerase III, alpha subunit [Clostridium perfringens E str.
            JGS1987]
 gi|170664100|gb|EDT16783.1| DNA polymerase III, alpha subunit [Clostridium perfringens E str.
            JGS1987]
          Length = 1192

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1078 (35%), Positives = 599/1078 (55%), Gaps = 67/1078 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +HS YSLL+G+  +  ++ +       +IA+TD   ++  ++  ++A A GI+PI
Sbjct: 6    FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +  +     +N           +VLLV   +GY+ L+++VS   + +      R
Sbjct: 66   LGCEVYVVPKSRKIKSNDEDN---KTYHLVLLVKNEKGYENLMKIVSVASI-EGFYYKPR 121

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   +L+E  +EG+I L+    G + +A    +   A +    ++  F D  Y+ LQ H 
Sbjct: 122  IDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAATFYRDTFKDGFYLELQNHG 180

Query: 191  GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
              ++ + ++V +QLA    +PLVATN+  ++++ED +AHD+LM +     V   +R R  
Sbjct: 181  IEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRYP 240

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   YLK+  EM  +F  +PEALENT++IA  C+F  + H   LP+F   E      E  
Sbjct: 241  SDQFYLKSPEEMWDMFDYIPEALENTLKIAEECNFDYEFHVSKLPKFPLPEGV----EPF 296

Query: 309  NELRNKAVAGLEVRLAQGAI-------------AKGYHAQDYR---QRLDFELNVIARMK 352
              LR     GL  RL +                  G + +  +   +RL++EL VI +M 
Sbjct: 297  EYLRKTCFDGLIDRLEELKPLKEKGIYDIDKVYEIGENNEKVKEDIERLEYELGVIKQMG 356

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            +  YFLIV DFI++A  N IP GPGRGS AG++ AY L IT IDP+++SLLFERFLNP+R
Sbjct: 357  YVDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERFLNPER 416

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPD D DFC + R  VI YV  KYGH+ V+QIITFG++ A+A +RDVGRA+   Y++V
Sbjct: 417  VSMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMNYTYAEV 476

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            DR+ K IP      +  +A+  +   +     +  V  L+++S++LEGL RH+STHAAG+
Sbjct: 477  DRIAKQIPTVLGVTID-KALDLNPELKTIYDTEERVKELIDVSRRLEGLPRHSSTHAAGV 535

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-Q 591
            VI  +PL + VP+ ++   +  VTQF+M  +E+ GL+K DFLGL+TLT+++ ++D +   
Sbjct: 536  VIASQPLVEYVPLQKN--DESIVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAVDMIKYN 593

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            RGV +DL  + FDD E Y ++    T+G+FQLES+GM   ++ ++PDC+EDIIA +SLYR
Sbjct: 594  RGVDIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIAGISLYR 653

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+  I  Y + K   + +  I P ++ +L  T GV++YQEQVM+I + L+GYS+  +D
Sbjct: 654  PGPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGYSMGRSD 713

Query: 712  VLRRAMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADY 759
            ++RRAM KK  + M+++++ FI             G  +NGIS   A  IF+ +  FA Y
Sbjct: 714  LVRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSMMDFASY 773

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSHAAAYAVI +QTA++  +YPVEFLAA +   M N +K+ ++ + A +  IQ++PP
Sbjct: 774  AFNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLGIQVLPP 833

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
             +N     F V  + I + + AIK VG     +I ++      F SL DFC+++D   +N
Sbjct: 834  DINESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGRFTSLMDFCNKIDLSIVN 893

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSD 936
            +R +ESL+ AG  D     R QLL   + I        K   +   ++F    E+   + 
Sbjct: 894  KRSVESLIKAGTFDSLKVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFGALQEESESNL 953

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------- 988
            +I        N       E+ + G Y SGHPLD Y+  L++      E+ +         
Sbjct: 954  EIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKEQTSITIEKIIEAQKNLNEQ 1013

Query: 989  -------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                            G  + +  ++ +  +K TR  + + +    +     E   FP
Sbjct: 1014 KNVELEDLVLDSSLTDGTRVIIGGILTNVSRKVTRNNTLMAFAKVEDLTGYLECVIFP 1071


>gi|312897946|ref|ZP_07757359.1| DNA polymerase III, alpha subunit [Megasphaera micronuciformis F0359]
 gi|310620980|gb|EFQ04527.1| DNA polymerase III, alpha subunit [Megasphaera micronuciformis F0359]
          Length = 1158

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1033 (36%), Positives = 572/1033 (55%), Gaps = 29/1033 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YSL +G   +  ++ +      PA+A+TD  N++  +   + A   GI+PI
Sbjct: 4    FVHLHNHTQYSLFDGLTRIPEMVKRAKDLGMPAVAVTDHGNMYGLIHLYKAAKKEGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSV 129
            +GC++ +      +  ++ +     +  ++LL     GYQ L+++VS+ ++  +      
Sbjct: 64   LGCEIYMTRGSRFEQKSKER-----LCHLILLAKDFHGYQNLVKIVSKAFVDGENSYHRP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R     L++   EGLI L+    G + +     +   A + L  F  LFG D  Y+ +Q 
Sbjct: 119  RADFDLLEQYH-EGLIALSACIEGQVQQDILNGNEMQARQTLERFISLFGKDDFYLEIQN 177

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +R         A  + L LVATN+  +L ++D  A +V + ++  + +   +  R
Sbjct: 178  HGLAEEREVRRVFKDWAEEYGLKLVATNDFHYLDKDDAPAQEVKLCISTGSTLDDPNHFR 237

Query: 248  VTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + + +    R EM  +F DLPEAL+ T+EIA +C+  +      LP+F   + +     
Sbjct: 238  FSNNEFYMKSREEMEKLFPDLPEALDTTLEIADKCNVEISFDERHLPQFPVPDGE----T 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +E+ LR                         R+RLD+EL VI  M F  YFLIV D++++
Sbjct: 294  DESYLRKLCEE-------ALPTRYSVITDAVRERLDYELGVINAMGFPSYFLIVWDYVKY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ + IPVGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R++MPD D+DFC + 
Sbjct: 347  ARDHKIPVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERITMPDIDMDFCYEN 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R  +I YV  KYG + VAQIITFG+L A+A LRDVGR L MP S+V+R+ K +PN+    
Sbjct: 407  RSRIIDYVTRKYGKDHVAQIITFGTLAARAVLRDVGRVLDMPLSEVNRIMKTVPNELGIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +    +     FR+       V RL++  ++LEGL RH+STHAAG+VI   P+   VPM 
Sbjct: 467  LDKA-LQTSKEFRKDYETKAEVRRLVDFGKRLEGLVRHSSTHAAGVVISAAPVDDYVPMQ 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDD 605
               +     TQ++   +E+ GL+K DFLGL+TLT++  ++  + +      D+  I  DD
Sbjct: 526  Y-SKEGYLTTQYDKDLVEELGLLKMDFLGLRTLTVIGDAVAMINRNYGIDLDIDKISLDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
              T  LLT   T G+FQ+ES G+   ++ + P   E +I LV+LYRPGP+ + +   +  
Sbjct: 585  EATCRLLTEGDTAGVFQMESQGITNLVKELAPKHFEHMIPLVALYRPGPLGSGMVEDFIK 644

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
              +G++K+  +HPL++P+LK+T GVI+YQEQVMQIA  + G+SL EAD+LRRAMGKK + 
Sbjct: 645  GSHGEKKVTYLHPLLEPILKDTYGVILYQEQVMQIASAMGGFSLGEADLLRRAMGKKKEG 704

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  Q+  F+ G  KN I   IA  +F+L+  FA YGFNKSH+AAYA +++QTA++K HY
Sbjct: 705  VLKAQRAHFLEGTRKNHIDDDIANKVFDLMVYFAGYGFNKSHSAAYAYVAWQTAYLKAHY 764

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
              EF+AA+MT  + +V KI  +  + ++ ++ ++ P VN     F V    I + LA IK
Sbjct: 765  CAEFMAATMTSMISDVAKISYYAAECKRHHVPVLSPDVNESESVFSVQGGNIRFGLAGIK 824

Query: 844  GVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG    R I+EA   D PF S EDFCSRVDS+ +NRR LESL+  GA+D FG  R QL+
Sbjct: 825  SVGENAIRTILEARKKDGPFTSFEDFCSRVDSRIVNRRGLESLIQCGAMDSFGKKRSQLM 884

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              LD          K+  +    +F       S  +          S+R   E+   GFY
Sbjct: 885  AVLDQAMSMGALRRKDNESGQMGLFDDVVSDVSTDLVYPDMEEYPLSMRLAMEKEYDGFY 944

Query: 963  FSGHPLDVYKPILRKMG--IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FSGHPLD Y  ++ K+      Y+E      G  I +  ++ + ++  T++   +  +T 
Sbjct: 945  FSGHPLDAYTEVMNKLTPLAVLYDEEARGYDGKMITVGGLITAVRRVTTKRNDAMAIITV 1004

Query: 1021 SEPAKEYEANFFP 1033
             +         FP
Sbjct: 1005 EDFTHTVTVVVFP 1017


>gi|258627365|ref|ZP_05722149.1| DNA polymerase III subunit alpha [Vibrio mimicus VM603]
 gi|258580403|gb|EEW05368.1| DNA polymerase III subunit alpha [Vibrio mimicus VM603]
          Length = 1159

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/1048 (41%), Positives = 621/1048 (59%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VHS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG    +          Q +     +  + +L     GY+ L  L+S+ YL   
Sbjct: 60   CGIKPIIGADFTL----------QSEEFGDELTKLTVLAKNNVGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  +WL E   EGLI+L+GG SG I RA    + Q  EK L  ++  F D  Y+
Sbjct: 110  VQHQPVIDKAWLME-HAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        ++LA  +ELP+VATN  +F++EE +EAH++ +A+     +   
Sbjct: 169  ELVRTGRADEESYLHFALELAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL++ +EM  +F+D+PEALEN+VEIA+RC+  +++       +       
Sbjct: 229  RRPKNYSPKQYLRSEAEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 284  EGMAIEDFLVMKSREGLEERLEFLFPNPEVRAQRRPEYDERLQIELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +    IA +   +E   AD  V  L++  + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K+   
Sbjct: 523  TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKMGQP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V DN  I Y + AIKGVG      I+EA   D  F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + AGALD  G  R  ++ S+D+  + A    +       ++F        + +    +  
Sbjct: 883  ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQTDMFGVLTDAPEEVEQKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ 
Sbjct: 943  EWPEKVRLEGERETLGLYLTGHPVDEYLKELVKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   +
Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|254693562|ref|ZP_05155390.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya]
 gi|261213827|ref|ZP_05928108.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya]
 gi|260915434|gb|EEX82295.1| DNA polymerase III subunit alpha [Brucella abortus bv. 3 str. Tulya]
          Length = 1163

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 588/1033 (56%), Positives = 760/1033 (73%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL+VHS+YSLLEGAL L  I+ +  AD+ PAIA+TDTNNLF ALEF+QKA   
Sbjct: 14   SATPGFVHLRVHSAYSLLEGALPLGKIIKQALADEAPAIAVTDTNNLFGALEFAQKASKD 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQLD+   D+   +    +     +  +VL+ +T  GY  ++ LVSR +L   
Sbjct: 74   GVQPIIGCQLDVAFGDHNDNSRSVNRKLALDLAPLVLIAATEAGYANIVRLVSRAFLDTP 133

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   WL  + +E +I LTGG  GPI R+F  + +  A  RL   K+ FG+RLYV
Sbjct: 134  AGDPIHIEAGWLPAL-SEDVIALTGGPLGPIGRSFTADRADRARARLAFLKETFGNRLYV 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQR  GYDR  E+  V+LAY  +LPLVATN + FL  ED+EAHD L+A+A   ++S  D
Sbjct: 193  ELQRQAGYDRTVEASTVELAYEMDLPLVATNEAFFLKAEDFEAHDALLAIAEGQILSNDD 252

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R R+TPDH LK+R+EM  +F+DLPE+LENTVEIA RCS+  Q   PILPRF  +  D   
Sbjct: 253  RRRLTPDHCLKSRAEMAELFADLPESLENTVEIAGRCSWYTQTRKPILPRFTGESDDPEA 312

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              + E +EL  +A  GL+ RL    +A+GY  + Y +RL++E+ +I RMKF GYFLIVAD
Sbjct: 313  AVQAEADELARQAREGLKKRLETAGLAEGYTPEQYAERLEYEIGIITRMKFPGYFLIVAD 372

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 373  FIKWAKAHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDF 432

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQDRR+EVIRYVQ KYG ++VAQIITFG+LQA+A LRDVGR L+MPY QVDRLCKL+P +
Sbjct: 433  CQDRREEVIRYVQEKYGRDQVAQIITFGTLQARAVLRDVGRVLEMPYGQVDRLCKLVPQN 492

Query: 483  PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            PA+PVS  QAI  + +  E R  +  V RLL+++ KLEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 493  PANPVSLAQAIESEPKINEEREKESVVGRLLDMALKLEGLYRHASTHAAGIVIGDRPLSE 552

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVPMYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A++G+ +DLS +
Sbjct: 553  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQTAVKLVARKGIDIDLSHL 612

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  Y
Sbjct: 613  PLDDALTYEMLSRGETVGVFQVESAGMRKALLGMKPDRVEDIIALVALYRPGPMENIPTY 672

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RKNG+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI
Sbjct: 673  NARKNGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKI 732

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +EEMDKQ+ RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK 
Sbjct: 733  REEMDKQRVRFVDGAVERGVDKAQANMIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKA 792

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEFLAASMT +M N +K+  F ++A +  I+++PPSV T    F+VG+ +I+YSLAA
Sbjct: 793  HYPVEFLAASMTYDMSNTDKLNDFRREANRLGIEVVPPSVKTSFRPFEVGEKKIFYSLAA 852

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI++  A+K F+SLEDFC R+D K +NRRVLESL+ AGA+DCFG  R  +
Sbjct: 853  IKGVGEAAVDHIVDVRAEKQFESLEDFCERIDPKIINRRVLESLINAGAMDCFGRDRAAM 912

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               +D I  +AQ  ++N  +   +IF    G   + + L   +    S     E + +GF
Sbjct: 913  CAGMDRILGFAQRTQENAVSGQSDIFG-LSGAPRETLILPPTAPWLPSEMLHREFQAVGF 971

Query: 962  YFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ +L +M ++ + +   A  RG +  RLA  V ++Q++KTR G+++G V 
Sbjct: 972  YLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQERKTRTGNKMGIVQ 1031

Query: 1020 FSEPAKEYEANFF 1032
             S+ + ++EA  F
Sbjct: 1032 LSDASGQFEAVLF 1044


>gi|254520595|ref|ZP_05132651.1| DNA polymerase III DnaE [Clostridium sp. 7_2_43FAA]
 gi|226914344|gb|EEH99545.1| DNA polymerase III DnaE [Clostridium sp. 7_2_43FAA]
          Length = 1187

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1075 (34%), Positives = 589/1075 (54%), Gaps = 61/1075 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  F HL +H+ YSLL+G+  +  I+ +       +IAITD   ++  + F ++A   GI
Sbjct: 5    SKKFTHLHLHTEYSLLDGSGKIKKIISRAKELGMDSIAITDHGVMYGCVSFYKEAIEQGI 64

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+GC++ +  +      N  +    +   +VLLV   EGY+ L+E+VS+  +      
Sbjct: 65   KPILGCEIYVAAKSMDIKINDKEN---STHHLVLLVKNEEGYKNLMEIVSQASIRG-FYY 120

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+   +L+   ++GLI L+    G +      ++ + A++  L +K +F D  Y+ +Q
Sbjct: 121  KPRVDHDFLRS-HSDGLIALSACLGGEVQSWHLKDNYEKAKEVALLYKDIFKDGFYLEIQ 179

Query: 188  RHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   ++       ++L+    +PL+ATN+  ++++ D E+HDVLM +     +   +R 
Sbjct: 180  NHGMDEQRKVIEGNIKLSKETGIPLIATNDVHYINQRDSESHDVLMCIQTGKTIDDPNRR 239

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  +   YLK+  +M  +FS +PEALENT++IA  C+F  + H   LP+F   E      
Sbjct: 240  RYPSDQFYLKSPEQMWDMFSHIPEALENTIKIAEECNFDYEFHVSKLPKFPVPEG----I 295

Query: 306  EEENELRNKAVAGLEVRLA------------QGAIAKGYHAQD---YRQRLDFELNVIAR 350
            E    L+N   +GL  R              +  +      ++   Y +RL++EL+VI +
Sbjct: 296  EPYEYLKNVCYSGLIERYEVFKEFLNRPLNVEELVDYYKTNEEACGYIERLEYELSVIKQ 355

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M +  YFLI  DFI+++ +N IP GPGRGS AGS+ AY L IT IDP+++SLLFERFLNP
Sbjct: 356  MGYVDYFLITWDFIRFSNENGIPTGPGRGSAAGSIVAYTLGITKIDPIKYSLLFERFLNP 415

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPD D DFC +RR EVI YV  KYG   V+QIITFG++  +A +RDVGRA+   Y+
Sbjct: 416  ERVSMPDIDSDFCYERRQEVIDYVVEKYGINNVSQIITFGTMAPRACIRDVGRAMNYSYA 475

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            +VDR+ K+IP      +    +  +   + A   +  V  L+++S+ LEGL RH+STHAA
Sbjct: 476  EVDRIAKMIPTMLGITIDKA-LEINPELKAAYNNEERVKALIDVSKDLEGLPRHSSTHAA 534

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+VI  +PL + VP+ R+   D  V QF+M  +E+ GL+K DFLGL+TLT++  ++  + 
Sbjct: 535  GVVIASKPLVEYVPLQRN--EDSIVAQFDMTTLEELGLLKMDFLGLRTLTVMNDAVKMIK 592

Query: 591  QRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            +   + ++L  I F+D + Y+++    T G+FQLES GM   ++ ++PDC+EDIIA +SL
Sbjct: 593  ENQGIDINLDKINFEDKDVYNMIGEGKTAGVFQLESPGMTSFMKELKPDCLEDIIAGISL 652

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            YRPGP+  I  Y   K   +K+    P ++ +L  T GV++YQEQVM+I + L+GYS+  
Sbjct: 653  YRPGPMGEIPRYVECKQNPDKVEYEVPELEDILNVTYGVMVYQEQVMEIVRKLAGYSMGR 712

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISG------------ASKNGISKTIAVNIFELLAKFA 757
            +D++RRAM KK  + M+++++ FI G              +NGIS+  A  IF+ +  FA
Sbjct: 713  SDLVRRAMSKKKHKVMEEERKNFIYGVVDDNGNIEVPGCKRNGISEEAANKIFDQMMDFA 772

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             Y FNKSHAAAYAVI YQTA++  +YPVE +AA +   M   EK+  +   A    IQ++
Sbjct: 773  SYAFNKSHAAAYAVIGYQTAYLMKYYPVETIAAMLNSVMGTSEKVAHYINFAESLGIQVL 832

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876
            PP +N     F V  ++I + LAAIK VG      I+E+  +   F+SL DF +++D   
Sbjct: 833  PPDINESYSKFTVKGDKIIFGLAAIKNVGYNVVETIVESRNNKGEFESLMDFINKIDLSS 892

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            +N+R +ESL+ AGALDCF   R +LL   + +        K   +   ++F  E+     
Sbjct: 893  VNKRAIESLIKAGALDCFDVFRSKLLAVYEKLMDSVSSERKRNIDGQISLFGMEEEIELP 952

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE------------ 984
            +I                E+ + G Y SGHPLD Y   L+       +            
Sbjct: 953  EINYPNIKEFAKKNILAMEKEMTGLYLSGHPLDEYADSLKVQTTTNIDKVYKSYEIISDT 1012

Query: 985  ----ESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                +           + L  ++    QK TR  + + ++   +     E   FP
Sbjct: 1013 FNQTDLPEDIIHDEERVILGGIIAESNQKITRSNTMMAFLKLEDLTGIIEVIVFP 1067


>gi|262170786|ref|ZP_06038464.1| DNA polymerase III alpha subunit [Vibrio mimicus MB-451]
 gi|261891862|gb|EEY37848.1| DNA polymerase III alpha subunit [Vibrio mimicus MB-451]
          Length = 1159

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/1048 (41%), Positives = 621/1048 (59%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VHS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG    +          Q +     +  + +L     GY+ L  L+S+ YL   
Sbjct: 60   CGIKPIIGADFTL----------QSEEFGDELTKLTVLAKNNVGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  +WL E   EGLI+L+GG SG I RA    + Q  EK L  ++  F D  Y+
Sbjct: 110  VQHQPVIDKAWLME-HAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        ++LA  +ELP+VATN  +F++EE +EAH++ +A+     +   
Sbjct: 169  ELVRTGRADEESYLHFALELAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL++ +EM  +F+D+PEALEN+VEIA+RC+  +++       +       
Sbjct: 229  RRPKNYSPKQYLRSEAEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 284  EGMAIEDFLVMKSREGLEERLEFLFPDLEVRAQRRPEYDERLQIELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +    IA +   +E   AD  V  L++  + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K+   
Sbjct: 523  TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKMGQP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V DN  I Y + AIKGVG      I+EA   D  F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + AGALD  G  R  ++ S+D+  + A    +       ++F        + +    +  
Sbjct: 883  ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQTDMFGVLTDAPEEVEQKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ 
Sbjct: 943  EWPEKVRLEGERETLGLYLTGHPVDEYLKELVKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   +
Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|220904502|ref|YP_002479814.1| DNA polymerase III, alpha subunit [Desulfovibrio desulfuricans subsp.
            desulfuricans str. ATCC 27774]
 gi|219868801|gb|ACL49136.1| DNA polymerase III, alpha subunit [Desulfovibrio desulfuricans subsp.
            desulfuricans str. ATCC 27774]
          Length = 1160

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1039 (40%), Positives = 610/1039 (58%), Gaps = 24/1039 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              FVHL  H+ YSLL+GA+ + ++  +      PA AITD  NLF A  F Q     GI 
Sbjct: 2    SDFVHLHCHTEYSLLDGAIRIKDLCARAKDFGMPACAITDHGNLFGAAYFYQGCKDFGIN 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC++ +      K T+           ++LL     GY  L++LVS  +L D     
Sbjct: 62   PIFGCEVYVCHDHTDKKTDSPLAR--RRHHLILLAQNKTGYHNLVKLVSHGFL-DGFYYK 118

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L++  +EGLI L+   +G I RA   +   +A K    +  ++ +R Y+ LQ 
Sbjct: 119  PRVDKGLLRKY-SEGLICLSACIAGEIPRAILADDMDLARKLTHEYADIYPNRFYLELQS 177

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++ +  + ++ LA T  LPLVATN+  +L+ +D EAH+VL+ +   T +    R +
Sbjct: 178  NGLKEQEKANAGLIDLAETCNLPLVATNDCHYLNADDAEAHEVLLCIQTQTTMDDPKRMQ 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + Y K+  EM   F  +PEAL NT  IA  C+  L       P +   E   +   
Sbjct: 238  FGTHELYYKSIEEMEKSFGHVPEALANTARIAEACNVELDFGNHYFPVYQLPEGASM--- 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+E R  A  GLE RL         + Q YR RL +EL VI  M F  YFLIV +FI W
Sbjct: 295  -ESEFRRLAEEGLEKRLVNHPDRDQLNPQTYRDRLQYELRVILEMGFPSYFLIVQEFINW 353

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N+IPVGPGRGS AGS+ A+AL IT++DP+ ++LLFERFLN +R+S+PD D+DFC+ R
Sbjct: 354  AKNNDIPVGPGRGSAAGSLVAWALRITNLDPIPYNLLFERFLNSERVSLPDIDVDFCERR 413

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R +VI+++   YG   VAQI TFG+++AK  +RDVGRAL M +++ DR+ KL+P D    
Sbjct: 414  RGDVIKHMVETYGEGSVAQITTFGTMKAKGVVRDVGRALGMSFAETDRIAKLVPADLKMT 473

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +    +  L D  V  LL+ +++LEGL RHASTHAAG+V+ D+P+ + +P+Y
Sbjct: 474  IK-KALESEPELEKLYLEDQQVKHLLDTARRLEGLARHASTHAAGLVVSDKPMKEYLPLY 532

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
               R +  VTQF+    EKAGL+KFDFLGLKT+TL+Q +LD +  Q     +L  +P  D
Sbjct: 533  LGKRGE-LVTQFDGPMTEKAGLVKFDFLGLKTMTLIQDTLDNISLQGQAPPNLDNLPLTD 591

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
             ETY L     T G+FQ+ESSGMRQ L  ++P C ED+IA+++LYRPGP+ + +V  +  
Sbjct: 592  AETYELYARGETDGVFQVESSGMRQYLRMLRPTCFEDVIAMLALYRPGPLGSGMVDEFIK 651

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+  ++  H  +   L++T GVI+YQEQVMQIAQ+++ Y+L  AD+LRRAMGKK  E
Sbjct: 652  RKHGQVPVIYPHESLTDCLRDTYGVIVYQEQVMQIAQIIASYTLGGADLLRRAMGKKKAE 711

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M K++  F++GA KN IS+  A  IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K HY
Sbjct: 712  AMAKERVTFVAGAQKNNISEEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTAYLKVHY 771

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
             VEF+AA +T EM N +K+ K+    +  +I ++ PSVN    +F   + ++ + L  IK
Sbjct: 772  KVEFMAALLTSEMGNQDKLLKYVSCCKDMDIDVVQPSVNRSQREFTAHEGKVVFGLGGIK 831

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG    R I+EA   ++ F SL D C RV+ +K+ +RVLESL+  GA DCFG +R  +L
Sbjct: 832  NVGDEAIREIVEARQQEEEFASLFDLCCRVNLRKVTKRVLESLIKGGACDCFGVARAAML 891

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-------LEKFSVENSSVRFENE 955
             SLD +   AQ   K++++   ++ A      S                      +   E
Sbjct: 892  ASLDLVVARAQRKAKDKSSNQVSLLAMAPVAESAPQPGIGIDCAEAATPEMADEDKLRAE 951

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSR 1014
            +  LGF+ + HPL  Y   +R++G+   E++     G  +R A +V S ++  T+ KG R
Sbjct: 952  KDALGFFLTSHPLQPYVREIRRLGLTTLEDARDMFPGAEVRCAVLVTSVREVITKSKGER 1011

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + +    +     E  FFP
Sbjct: 1012 MAFAAVEDLTGHAEVTFFP 1030


>gi|262404579|ref|ZP_06081134.1| DNA polymerase III alpha subunit [Vibrio sp. RC586]
 gi|262349611|gb|EEY98749.1| DNA polymerase III alpha subunit [Vibrio sp. RC586]
          Length = 1159

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/1048 (40%), Positives = 619/1048 (59%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VHS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG    +          Q +     +  + +L     GY+ L  L+S+ YL   
Sbjct: 60   CGVKPIIGADFTL----------QSEEFGDELTKLTVLAKNNIGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  +WL E   EGLI+L+GG SG I RA    + Q  EK L  ++  F D  Y+
Sbjct: 110  VQHQPVLDKAWLME-HAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        ++LA  +ELP+VATN  +F++EE +EAH++ +A+     +   
Sbjct: 169  ELVRTGRADEESYLHFALELAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL++ +EM  +F+D+PEALEN+VEIA+RC+  +++       +       
Sbjct: 229  RRPKNYSPKQYLRSEAEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 284  EGMAIEDFLVMKSREGLEERLEFLFPNPEVRAQRRPEYDERLQIELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +    IA +   +E   AD  V  L++  + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRAVFQEGAENNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V DN  I Y + AIKGVG      I+EA   D  F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + AGALD  G  R  ++ S+D+  + A    +       ++F        + +    +  
Sbjct: 883  ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ 
Sbjct: 943  EWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   +
Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|51245515|ref|YP_065399.1| DNA polymerase III, alpha subunit [Desulfotalea psychrophila LSv54]
 gi|50876552|emb|CAG36392.1| related to DNA polymerase III, alpha subunit [Desulfotalea
            psychrophila LSv54]
          Length = 1199

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1041 (40%), Positives = 627/1041 (60%), Gaps = 20/1041 (1%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              S  F HL VH+ YSLL+GA+ L +++DK       ++AITD   ++ ALEF  KA  A
Sbjct: 23   PMSAGFTHLHVHTQYSLLDGAIRLPDLIDKCKEFGMDSVAITDHGAMYGALEFYTKAKKA 82

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PI+G +L I   D   M  Q K    T   IVLL     GYQ L+++ S     D  
Sbjct: 83   GIKPIVGSELYIAPGD---MREQKKINGQTAYHIVLLAMNKTGYQNLMKMASIA-QSDGF 138

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                RI ++ LQE   EG+I LT    G +           A K+      +FGDRLY  
Sbjct: 139  YYKPRIDMAVLQEY-NEGIIALTACLHGQVPYLIMKGDMDGARKKAQELHDIFGDRLYFE 197

Query: 186  LQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ +   ++    + +  LA    + LVATN+  +L+ ++  AH+VL+ +     ++  +
Sbjct: 198  LQENSIAEQQPVNAGLKILAKEMGVKLVATNDCHYLNRQEAHAHEVLLCIQMGKTINDTN 257

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R  + + Y K+  EM   F   PEA+ +T EIA RC+  L       P F   E + +
Sbjct: 258  RFRFSSDEFYFKSPKEMERAFHHCPEAIASTQEIADRCNLELTFDDYYFPNFPVPEGESL 317

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                            E   A G+       + Y+ RL+ E++VI  M F GYFLIVADF
Sbjct: 318  STMFTTACWEGLETRFEEMRALGSYKDN-TEKTYKARLEMEIDVINTMGFPGYFLIVADF 376

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I WAK  +IPVGPGRGSGAGS+ AYA+ IT+IDP+ + L+FERFLN +R SMPDFDIDFC
Sbjct: 377  INWAKSKDIPVGPGRGSGAGSIAAYAMKITNIDPMPYGLIFERFLNIERKSMPDFDIDFC 436

Query: 424  QDRRDEVIRYVQNKY-GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            QDRR EVI YV+ KY G E VAQIIT+GS++A+  +RDVGRAL +P+++VDR+ KL+P+ 
Sbjct: 437  QDRRGEVIDYVRRKYGGAEHVAQIITYGSMKARGVIRDVGRALDIPFTEVDRIAKLVPDQ 496

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A+A++ + +EA   DP +  L+ +S+ LEGL RH S HAAG+VI   P++  
Sbjct: 497  LKMTLL-KALAEEPKLQEAADNDPQIQELISVSKTLEGLARHTSVHAAGVVISPEPMTHY 555

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601
            +P  R   +D  VTQ++MK  E  GLIKFDFLGLKTLT++ K++  +   + + +++  I
Sbjct: 556  LPTCRGGEADERVTQYDMKHTEMTGLIKFDFLGLKTLTVIDKAVKHVHADKKIPLNIDAI 615

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV-- 659
            P DD +T+ LL     LG+FQLES GMR+ L  M P+   D+IALV+LYRPGP+D+ +  
Sbjct: 616  PMDDPKTFDLLCRGDALGVFQLESEGMRELLVKMAPEQFSDLIALVALYRPGPLDSGMVD 675

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +   K+G+ +     P + P+L+ET GVI+YQEQVM+IA +L+ YSL +AD+LRRAMGK
Sbjct: 676  DFVETKHGRAEANYPLPQLKPVLEETYGVIVYQEQVMKIASILANYSLGDADILRRAMGK 735

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KI   MD++K +F+ GA KN +    A  +F+L+AKFA YGFNKSH+AAYA++SYQTA++
Sbjct: 736  KIAAVMDEEKVKFMEGAEKNEVPLDKAEYVFDLMAKFAGYGFNKSHSAAYALVSYQTAYL 795

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K H+P +F+AA ++ +M+N +K+ ++  + ++ +I+++PP +N    DF V ++RI + +
Sbjct: 796  KAHHPAQFMAALLSCDMNNTDKVVRYINECKEQHIEVLPPDINESFKDFTVINDRIRFGM 855

Query: 840  AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            AA+K VG      I+E   AD P+ S+ DFC+RVDS+K+N RV+ESLV +G+ D  GY R
Sbjct: 856  AAVKNVGGAALDSIIEERQADGPYTSISDFCNRVDSRKVNSRVIESLVKSGSFDSLGYKR 915

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK------ITLEKFSVENSSVRF 952
             Q ++ L+   + A+ V++++ +   ++FA  + +   K      + +      +   + 
Sbjct: 916  SQFIEVLEKAMEQAKAVQRDKQSGQISLFAVAQPSAGQKDQEVNSLHMPDMEEWSDKQKL 975

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              E+  +GFY +GHPLD   P L+ +      + V       +R+  +V + ++ +++KG
Sbjct: 976  LFEKETVGFYITGHPLDDVMPELKTIIDAQIHDLVDKDEDQAVRIGGLVRTYKKHRSQKG 1035

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
              + ++T  +  +  E   FP
Sbjct: 1036 DAMAFITIEDIFEAVEVVVFP 1056


>gi|182624555|ref|ZP_02952338.1| DNA polymerase III, alpha subunit [Clostridium perfringens D str.
            JGS1721]
 gi|177910363|gb|EDT72744.1| DNA polymerase III, alpha subunit [Clostridium perfringens D str.
            JGS1721]
          Length = 1192

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1078 (35%), Positives = 599/1078 (55%), Gaps = 67/1078 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +HS YSLL+G+  +  ++ +       +IA+TD   ++  ++  ++A A GI+PI
Sbjct: 6    FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +  +     +N           +VLLV   +GY+ L+++VS   + +      R
Sbjct: 66   LGCEVYVVPKSRKIKSNDEDN---KTYHLVLLVKNEKGYENLMKIVSVASI-EGFYYKPR 121

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   +L+E  +EG+I L+    G + +A    +   A +    ++  F D  Y+ LQ H 
Sbjct: 122  IDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAATFYRDTFKDGFYLELQNHG 180

Query: 191  GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
              ++ + ++V +QLA    +PLVATN+  ++++ED +AHD+LM +     V   +R R  
Sbjct: 181  IEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRYP 240

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   YLK+  EM  +F  +PEALENT++IA  C+F  + H   LP+F   E      E  
Sbjct: 241  SDQFYLKSPEEMWDMFDYVPEALENTLKIAEECNFDYEFHVSKLPKFPLPEGV----EPF 296

Query: 309  NELRNKAVAGLEVRLAQGAI-------------AKGYHAQDYR---QRLDFELNVIARMK 352
              LR     GL  RL +                  G +    +   +RL++EL VI +M 
Sbjct: 297  EYLRKTCFDGLIDRLEELRPLKEKGIYDIDKVYEIGENNDKVKEDIERLEYELGVIKQMG 356

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            +  YFLIV DFI++A  N IP GPGRGS AG++ AY L IT IDP+++SLLFERFLNP+R
Sbjct: 357  YVDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERFLNPER 416

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPD D DFC + R  VI YV  KYGH+ V+QIITFG++ A+A +RDVGRA+   Y++V
Sbjct: 417  VSMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMNYTYAEV 476

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            DR+ K IP      +  +A+  +   +     +  V  L+++S++LEGL RH+STHAAG+
Sbjct: 477  DRIAKQIPTVLGVTID-KALDLNPELKTIYDTEERVKELIDVSRRLEGLPRHSSTHAAGV 535

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-Q 591
            VI  +PL + VP+ ++   +  VTQF+M  +E+ GL+K DFLGL+TLT+++ ++D +   
Sbjct: 536  VIASQPLVEYVPLQKN--DESIVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAVDMIKYN 593

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            RGV++DL  + FDD E Y ++    T+G+FQLES+GM   ++ ++PDC+EDIIA +SLYR
Sbjct: 594  RGVEIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIAGISLYR 653

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+  I  Y + K   + +  I P ++ +L  T GV++YQEQVM+I + L+GYS+  +D
Sbjct: 654  PGPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGYSMGRSD 713

Query: 712  VLRRAMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADY 759
            ++RRAM KK  + M+++++ FI             G  +NGIS   A  IF+ +  FA Y
Sbjct: 714  LVRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSMMDFASY 773

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSHAAAYAVI +QTA++  +YPVEFLAA +   M N +K+ ++ + A +  IQ++PP
Sbjct: 774  AFNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLGIQVLPP 833

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
             +N     F V  + I + + AIK VG     +I ++      F SL DFC+++D   +N
Sbjct: 834  DINESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGRFTSLMDFCNKIDLSIVN 893

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSD 936
            +R +ESL+ AG  D     R QLL   + I        K   +   ++F    E+   + 
Sbjct: 894  KRSVESLIKAGTFDSLKVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFGALQEESESNL 953

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------- 988
            +I        N       E+ + G Y SGHPLD Y+  L++      E+ +         
Sbjct: 954  EIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKEQTSITIEKIIEAQKNLNEQ 1013

Query: 989  -------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                            G  + +  ++ +  +K TR  + + +    +     E   FP
Sbjct: 1014 KNVELEDLVLDSSLTDGTRVIIGGILTNVSRKVTRNNTLMAFAKVEDLTGYLECVIFP 1071


>gi|303328214|ref|ZP_07358652.1| DNA polymerase III, alpha subunit [Desulfovibrio sp. 3_1_syn3]
 gi|302861544|gb|EFL84480.1| DNA polymerase III, alpha subunit [Desulfovibrio sp. 3_1_syn3]
          Length = 1159

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1039 (39%), Positives = 600/1039 (57%), Gaps = 26/1039 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              FVHL  H+ YSLL+GA+ + ++  +      PA AITD  N+F A  F       GI+
Sbjct: 2    SDFVHLHCHTEYSLLDGAIRIKDLCARAKDYGMPACAITDHGNMFGAAYFYAACKDFGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI GC++ +      K +   +        ++LL     GY  L++LVS  +L D     
Sbjct: 62   PIFGCEVYVCHDHTDKTSELARRR----HHLILLAQNELGYHNLVKLVSHGFL-DGFYYK 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L+    EGL  L+   +G I RA        A      +  ++  R Y+ LQ 
Sbjct: 117  PRVDKELLRRY-AEGLTCLSACIAGEIPRAILAKDMDKALSLTREYADIYPGRFYLELQS 175

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++    + ++++A T +LPLVATN+  +L+ +D +AH+VL+ +   T +    R R
Sbjct: 176  NGLAEQEVVNNALLEIAETADLPLVATNDCHYLNADDADAHEVLLCIQTQTTMDDPKRMR 235

Query: 248  VTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                        EM   F+ +PEAL NT+ IA  C+  L       P +   E   +   
Sbjct: 236  FETHELYYKSIEEMEKPFAHVPEALANTMRIAETCNVELDFGHHYFPVYQLPEGASM--- 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+E R  A  GLE RL +    +      YR+RL +EL VI  M F GYFLIV +FI W
Sbjct: 293  -ESEFRRLAEEGLERRLEKHPDRENIDPARYRERLQYELGVILEMGFPGYFLIVQEFINW 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + IPVGPGRGS AGS+ A++L IT++DPL ++LLFERFLN +R+S+PD D+DFC+ R
Sbjct: 352  AKNHGIPVGPGRGSAAGSLVAWSLRITNLDPLPYNLLFERFLNNERVSLPDIDVDFCERR 411

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R +VIR++ + YG   VAQI TFG+++AK  +RDVGRAL M +++ DR+ KL+P+D    
Sbjct: 412  RGDVIRHMVDTYGEGSVAQITTFGTMKAKGVVRDVGRALGMTFAETDRIAKLVPDDLKMT 471

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   R+    D  V  LL+ +++LEGL RHASTHAAG+V+ D+P+ + +P+Y
Sbjct: 472  IK-KALDLEPDLRKLYEEDQQVRHLLDTARRLEGLARHASTHAAGLVVSDKPMEEYLPLY 530

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
               R +  VTQF+    EKAGL+KFDFLGLKT+TL+Q +LD +  Q     DL  +P  D
Sbjct: 531  LGKRGE-LVTQFDGPMTEKAGLVKFDFLGLKTMTLIQDTLDNISLQGQTPPDLDNLPLTD 589

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
             ETY L     T G+FQ+ESSGMRQ L  ++P C ED+IA+++LYRPGP+ + +V  +  
Sbjct: 590  AETYELYARGDTDGVFQVESSGMRQYLRMLRPTCFEDVIAMLALYRPGPLGSGMVDEFIK 649

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+  +V  H  +   L++T GVI+YQEQVMQIAQ+++ Y+L  AD+LRRAMGKK  E
Sbjct: 650  RKHGQVPVVYPHDSLTECLRDTYGVIVYQEQVMQIAQIIASYTLGGADLLRRAMGKKKAE 709

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M K++  F++GA KNGI+K  A  IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K HY
Sbjct: 710  AMAKERVTFVAGAEKNGIAKEKANEIFDLMEKFAEYGFNKSHSAAYALISYFTAYLKVHY 769

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
             VEF+AA +T EM N +K+ K+    +   I ++ PSVN    +F     ++ + L  IK
Sbjct: 770  KVEFMAALLTSEMGNQDKLLKYVSCCKDMGIDVVQPSVNQSQREFTAHGGQVVFGLGGIK 829

Query: 844  GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG    R I+E   +   + SL D C RV+ +K+ +RVLESL+  GA DCF  SR  +L
Sbjct: 830  NVGDEAIREIVEGRKEGGDYISLLDLCCRVNLRKVTKRVLESLIKGGACDCFNVSRAGML 889

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-------KITLEKFSVENSSVRFENE 955
             +L+ +   AQ   K++++   ++ A      +                     ++   E
Sbjct: 890  AALEIVVARAQKKAKDKSSNQVSLLAMAPVVEAAPQPGVGLDCPEATLPEMEDDLKLRAE 949

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSR 1014
            +  LGF+ + HPL  Y   +R++ +   E++     G  I  A +V S ++  T+ KG R
Sbjct: 950  KEALGFFLTSHPLQPYSREIRRLRLTTLEDARELFPGAEINCAVLVTSIKEVLTKSKGER 1009

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + +V   +     E  FFP
Sbjct: 1010 MAFVGVEDLTGHAEVTFFP 1028


>gi|167768149|ref|ZP_02440202.1| hypothetical protein CLOSS21_02705 [Clostridium sp. SS2/1]
 gi|317499630|ref|ZP_07957892.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167709673|gb|EDS20252.1| hypothetical protein CLOSS21_02705 [Clostridium sp. SS2/1]
 gi|291560175|emb|CBL38975.1| DNA polymerase III catalytic subunit, DnaE type [butyrate-producing
            bacterium SSC/2]
 gi|316893105|gb|EFV15325.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 1151

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1046 (35%), Positives = 572/1046 (54%), Gaps = 39/1046 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +  ++ +       +IAITD   ++  ++F + A A GI+P
Sbjct: 2    SFTHLHVHTEYSLLDGSSKIKELVHQAKELGMDSIAITDHGAMYGVIDFYRAAKAEGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +          +          +VLL     GY  L+++VSR +  +      
Sbjct: 62   IIGCEIYVTTGSRFDK--EASQGDKRYYHLVLLAQNDTGYHNLMKIVSRGFT-EGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L+E   EGLI L+   +G +      N+ + A+   L  + LFG D  ++ LQ 
Sbjct: 119  RVDYEVLEEY-KEGLIALSACLAGEVATYIRENNYEKAKNTALRLQDLFGKDNFFLELQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+    + +++++    + LVATN+  +  +ED EAHD+L+ +     V  +DR R
Sbjct: 178  HGIPDQTKVNTALLKMSKETGIDLVATNDIHYTFKEDAEAHDILLCIQTGKKVQDEDRMR 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +YLK+  EM  +F    EA+ENT +IA+RC+  +      +P +   E       
Sbjct: 238  YEGGQYYLKSPEEMQRLFPYAREAIENTGKIAKRCNVEIVFGEQKVPEYDVPEG----YT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L +    GL+ R            ++ R+RLD+EL  I  M +  YFLIV DFI +
Sbjct: 294  AVTYLNHLCEEGLKRRYPN-------ITKELRERLDYELKTIENMGYVDYFLIVWDFIHY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK++ I VGPGRGS AGS+ +Y L ITDIDP+R+ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  AKEHGIAVGPGRGSAAGSIVSYCLEITDIDPIRYQLLFERFLNPERVSMPDIDVDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG ++V QIITFG++ A+A +RDVGR L +PY++VD + K++PN+    
Sbjct: 407  RQEVIDYVVRKYGKDQVVQIITFGTMAARAVIRDVGRVLDIPYAKVDGISKMVPNELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+      R A   D     L+++S++LEGL RHAS HAAG+VIG   + + VP+ 
Sbjct: 467  ID-KALKISKDLRNAYEQDEETHYLIDMSKRLEGLPRHASMHAAGVVIGKTAIDEYVPLA 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                 +  VTQF M  IE+ GL+K DFLGL+TLT++Q +   + ++    D++ I   D 
Sbjct: 526  TGA-DNAAVTQFTMTTIEELGLLKMDFLGLRTLTVIQDAEKMVRRKVPDFDITKIDPTDK 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            E Y ++    T G+FQLESSGM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   KN
Sbjct: 585  EVYEMIGNGHTEGVFQLESSGMKSFMKELKPQNMEDIIAGISLYRPGPMDFIPRYIEGKN 644

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +E I      ++ +L+ T G I+YQEQVMQI   L+GY+L  +D++RRAM KK  + M 
Sbjct: 645  HQESIHYECEQMEEILEPTYGCIVYQEQVMQIVMKLAGYTLGRSDLVRRAMSKKKGDVMI 704

Query: 727  KQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K+++ F        I G   NGI +  A  I++ +  FA Y FNKSHAAAYAV++Y+TA+
Sbjct: 705  KERQNFVYGNEEEGIPGCINNGIDEKTANQIWDEMLDFAKYAFNKSHAAAYAVVAYRTAY 764

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            ++ HYPVEF+AA +T  + N  KI ++    ++  I+I+PP +N     F V    I Y 
Sbjct: 765  LRCHYPVEFMAALLTSVLGNTNKISEYSYACKKLGIKILPPDINYGEGAFSVDHGNIRYG 824

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIK +G      I+     + P+   +D   R+ SK++N+R +E+L+ +GALDCF  +
Sbjct: 825  LTAIKSLGRPVIEAIIRERNLNGPYRDFKDLVERLSSKEINKRTVENLIKSGALDCFHVT 884

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENE 955
            R Q +    ++    Q   KN      ++     E+   S +I+           +   E
Sbjct: 885  RKQQMIVYASVIDSIQKERKNEIAGQMSLMDLLGEEDQQSFQISYPDVGEYEKEQKLAME 944

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQQK 1007
            + VLG Y SGHPL+     L +       +                +  +  ++     K
Sbjct: 945  KEVLGIYVSGHPLEDDIERLERSVTAHTSDFVIDEETGKTKIHDRESCIIGGLISEMSVK 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T+K   + ++T  +     E   FP
Sbjct: 1005 LTKKNQNMAFITLEDLRGTVEVVVFP 1030


>gi|262166322|ref|ZP_06034059.1| DNA polymerase III alpha subunit [Vibrio mimicus VM223]
 gi|262026038|gb|EEY44706.1| DNA polymerase III alpha subunit [Vibrio mimicus VM223]
          Length = 1159

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/1044 (41%), Positives = 620/1044 (59%), Gaps = 37/1044 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   GI+
Sbjct: 4    PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L     GY+ L  L+S+ YL    +  
Sbjct: 64   PIIGADFTL----------QSEEFGDELTKLTVLAKNNVGYKNLTLLISKAYLRGHVQHQ 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I  +WL E   EGLI+L+GG SG I RA    + Q  EK L  ++  F D  Y+ L R
Sbjct: 114  PVIDKAWLME-HAEGLIVLSGGKSGEIGRALLKGNQQQVEKCLEFYQTHFADHFYLELVR 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                D        ++LA  +ELP+VATN  +F++EE +EAH++ +A+     +    RP+
Sbjct: 173  TGRADEESYLHFALELADQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPK 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  YL++ +EM  +F+D+PEALEN+VEIA+RC+  +++       +           
Sbjct: 233  NYSPKQYLRSEAEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPNFPTEGMA 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +F
Sbjct: 288  IEDFLVMKSREGLEERLEFLFPDPEVRAQRRPEYDERLQIELDVINQMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P DP
Sbjct: 408  MDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +    IA +   +E   AD  V  L++  + LEG  R+A  HA G+VI    ++   
Sbjct: 468  GMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598
            P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K+      +
Sbjct: 527  PIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKMGQPPVRI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + 
Sbjct: 587  EAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSG 646

Query: 659  VV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V  + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 647  MVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    F V 
Sbjct: 767  VSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVD 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            DN  I Y + AIKGVG      I+EA   D  F  L DFC+R+D KK+N+RV+E L+ AG
Sbjct: 827  DNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKLILAG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948
            ALD  G  R  ++ S+D+  + A    +       ++F        + +    +      
Sbjct: 887  ALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQTDMFGVLTDAPEEVEQKYTQVPEWPE 946

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
             VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ +   
Sbjct: 947  KVRLEGERETLGLYLTGHPVDEYLKELVKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMT 1006

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G+RIG +T  + +   E   +
Sbjct: 1007 TKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|218885238|ref|YP_002434559.1| DNA polymerase III subunit alpha [Desulfovibrio vulgaris str.
            'Miyazaki F']
 gi|218756192|gb|ACL07091.1| DNA polymerase III, alpha subunit [Desulfovibrio vulgaris str.
            'Miyazaki F']
          Length = 1173

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1037 (40%), Positives = 617/1037 (59%), Gaps = 24/1037 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              FVHL  H+ YSLL+GA+ L ++  K      PA AITD  NL+ A+ F       GI+
Sbjct: 2    SDFVHLHCHTEYSLLDGAIRLKDLCAKAVDFGMPAAAITDHGNLYGAVYFYNTCKQFGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC++ +      K +   +        +VLL    EGY  L++LVS  +L       
Sbjct: 62   PIIGCEVYVANDHTDKTSELARVR----HHLVLLARDNEGYHNLVKLVSHGFLHG-FHYK 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+ +  L++  + G+  L+   +G + RA   +    A +    ++ ++    Y+ LQ 
Sbjct: 117  PRVDMDLLRQY-SGGITALSACLAGQVPRALLRSGMDDAIRIAREYEAIYPGNFYLELQS 175

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++     ++++LA    LPLVATN+  +L   D EAHDVL+ +     V  + R R
Sbjct: 176  NGLKEQDELNEKLIELADHTGLPLVATNDCHYLEASDVEAHDVLLCIQTQAKVDDERRMR 235

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + Y K+  EM   F+ +P+A+ NT  IA +C+   +    + P +   E       
Sbjct: 236  FETKELYYKSPEEMAKAFAHVPDAVANTGRIAEQCAVKFEFGKYVFPVYALPEGM----T 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+E R  +  GL+ RL +           Y +RL+ EL+VI +M F GYFLIV DFI W
Sbjct: 292  LEDEFRRLSREGLKRRLERHPNRDTIDHDLYWKRLELELDVIGQMGFPGYFLIVQDFINW 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N IPVGPGRGS AGS+ A++L IT++DP+ ++LLFERFLN +R+SMPD D+DFC+ R
Sbjct: 352  AKDNGIPVGPGRGSAAGSLVAWSLRITNLDPIPYNLLFERFLNIERVSMPDIDVDFCERR 411

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVIRYV  KYG + VAQI TFG ++AKA +RDVGRAL M +++ DR+ KL+P D    
Sbjct: 412  RTEVIRYVGEKYGEDMVAQITTFGKMKAKAVVRDVGRALGMTFAETDRIAKLVPEDLKMT 471

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            V  +AI  +         DP + +LL++S +LEGL RHASTHAAG+V+ DRP+ + +P+Y
Sbjct: 472  VK-KAIDAEPDLAALYKTDPQIRKLLDVSMRLEGLSRHASTHAAGVVVSDRPMREYLPLY 530

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            R  +    VTQF+MK +EK GL+KFDFLGL+T+TL+Q SLD +A++     DL  +  DD
Sbjct: 531  RG-KKGEIVTQFDMKMVEKVGLVKFDFLGLRTMTLVQDSLDEIARQGKTPPDLDTLALDD 589

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
             ETY L +   T GIFQ+ESSGMRQ L  ++P C +D+IA+++LYRPGP+ + +V  +  
Sbjct: 590  AETYELYSRGDTDGIFQVESSGMRQYLRMLKPSCFDDVIAMLALYRPGPLGSGMVDEFIK 649

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+  +    P ++  L++T GVI+YQEQVMQIAQ+ +GY+L  AD+LRRAMGKK  E
Sbjct: 650  RKHGEVPVTYPLPSLEDCLRDTYGVIVYQEQVMQIAQIAAGYTLGGADLLRRAMGKKNAE 709

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM +Q+ +F+ GA KNG+ K  A  IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K H+
Sbjct: 710  EMGQQRIKFVEGAQKNGVPKATADEIFDLMEKFAEYGFNKSHSAAYALISYYTAYLKVHF 769

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P EF+AA +T EM N +K+ K+    +   I ++ P+V     +F V +  I + L  IK
Sbjct: 770  PTEFMAALLTSEMGNQDKLLKYVAACKDMGIAVLQPNVQASRREFTVHEGAIVFGLGGIK 829

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG    R I++A  +   F SL D C RV+ +K+ +RVLESL+  GA DC G +R  +L
Sbjct: 830  NVGDEAIREIVDAREEGGVFASLLDLCMRVNLRKVTKRVLESLIKGGACDCLGCTRAGML 889

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI------TLEKFSVENSSVRFENEQ 956
             +LDN+   AQ   K++ +   ++F       +           ++    +   +   E+
Sbjct: 890  AALDNVVSKAQKRLKDKESNQVSLFTMVPEEPAVCPGIGFDCEEQQAQEWDDDQKLRFEK 949

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              LGF+ + HPL  Y+  L ++ +   EE+     G +++ A +V   ++  T+KG+R+ 
Sbjct: 950  EALGFFLTSHPLQPYRKELFRLRLTPLEETRDMAPGMSLKTAVLVTGIKEHMTKKGARMA 1009

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++   +     E  FFP
Sbjct: 1010 FLQVEDLTASGECVFFP 1026


>gi|261253713|ref|ZP_05946286.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891]
 gi|260937104|gb|EEX93093.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891]
          Length = 1159

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1048 (39%), Positives = 609/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A +
Sbjct: 1    MSD-PKFIHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPAVALTDFTNLCGLVKFYGTAHS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG               Q       +  + +L +   GY+ L  L+S+ YL   
Sbjct: 60   CGIKPIIGADF----------LMQSAEFGDELTRLTVLAADNTGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I   WL E+ +EG+I+L+GG SG I +A    + + AE+ L  ++  F DR Y+
Sbjct: 110  VQHQPVIDKEWLTEL-SEGVIILSGGKSGEIGKALLKGNQKAAEECLAFYQTHFPDRFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        ++LA   ++P+VATN  + L E  ++AH++ +A+     +   
Sbjct: 169  ELTRTGRADEETYLHFALELAEQSDIPVVATNEVVILEESLFDAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL++  EM  +FSD+PEALEN+VEIA+RC+  +++       +       
Sbjct: 229  RRPKNYSPQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGE-----YFLPAFPT 283

Query: 303  IQKEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               EE   L  K+  GLE     L      +     +Y  RL  EL VI  M F GYFLI
Sbjct: 284  EGMEETEFLVKKSEEGLEDRLEFLFPDPAVRAERRPEYDDRLKIELEVINNMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L   +  VDR+ KL+
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHGFGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   +    E    D  +  L+++ + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFKAEPALPELYANDEEIKELIDMCRILEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP  D  +++LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVAIESIPLVDQASFNLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E +        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAVSYPDEQWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT +MDN EK+     +  +  ++++PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTADMDNTEKVVGLVDECFRMKLKVLPPDINAGLYR 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  +  I Y + AIKGVG      I+EA   D  F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVDEEGAIVYGIGAIKGVGEGPIDAILEARNKDGHFKDLFDFCARIDLKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            ++AGALD  G  R  L+ SL++  K A    +       ++F    +     +    K  
Sbjct: 883  IYAGALDRLGPHRAALMASLNDAVKAASQHHQAEAFGQSDLFGVLTEAPEEVEHKYTKVE 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ 
Sbjct: 943  PWPEKVWLEGERDTLGLYLTGHPINAYIRELGKYTSCRLKDATPTRRDQSVTVAGLVIAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|92117240|ref|YP_576969.1| DNA polymerase III subunit alpha [Nitrobacter hamburgensis X14]
 gi|91800134|gb|ABE62509.1| DNA polymerase III, alpha subunit [Nitrobacter hamburgensis X14]
          Length = 1168

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 530/1040 (50%), Positives = 704/1040 (67%), Gaps = 15/1040 (1%)

Query: 1    LTQYLEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
            ++Q L  +   FVHL VHS+YSLL+G++ +  + +   AD QPA+A+TDT+N+F ALEFS
Sbjct: 1    MSQKLAAANAGFVHLHVHSAYSLLKGSIKIQKLAELAKADHQPALALTDTDNMFGALEFS 60

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
             K    GIQPI+GC+L +D  D     +           IVLL +   GY+ L+ L SR 
Sbjct: 61   DKVAGYGIQPIVGCELAVDFDD----QDPNARSALPFARIVLLATREAGYRNLMRLNSRA 116

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +L     Q+  I   WL++   EGLI LTGG  GP+  AF  + S +A  R      +FG
Sbjct: 117  FLESALHQTPHIKSGWLRDE-NEGLIALTGGPDGPVALAFNADHSALAIARCDQLAGVFG 175

Query: 180  DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            DRLYV LQRH    +R  E  ++ LAY   LPLVATN   F + +DYEAHD L+ +A   
Sbjct: 176  DRLYVELQRHGLDKERRVEGALIDLAYAKGLPLVATNEPYFAASDDYEAHDALLCIAGGR 235

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +V++ DR ++TPDH  K R+EM  +F+D+PEAL +T+EIA RC+F      PILP F   
Sbjct: 236  LVAETDRDQLTPDHRFKTRAEMAVLFADIPEALSSTIEIAERCAFRPLTRKPILPHFAVG 295

Query: 299  ECD---DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                  D + +E  ELR +A  GL  RLA   +++G    DY  RL FEL+VI RM ++G
Sbjct: 296  AGANAADAKSDEVAELRRQAEEGLANRLAVHGLSQGMTEDDYSARLSFELDVITRMNYAG 355

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI+ AK   IPVGPGRGSGAGS+ AY LTITD+DP+RF LLFERFLNP+R+SM
Sbjct: 356  YFLIVADFIKHAKSEGIPVGPGRGSGAGSLVAYVLTITDLDPIRFGLLFERFLNPERVSM 415

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQ+RR EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L
Sbjct: 416  PDFDIDFCQERRGEVIDYVQKRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKL 475

Query: 476  CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KL+P +PA P++   AIA + + +  R  DP V R  +I+Q+LEGL RHASTHAAGIVI
Sbjct: 476  TKLVPQNPAAPITLAAAIASEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVI 535

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
            GDRPLS+LVP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L QR V
Sbjct: 536  GDRPLSELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRNV 595

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +DL+ +P DD E+Y +LT    +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPGP
Sbjct: 596  HIDLATLPLDDAESYQMLTRGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGP 655

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + NI  Y  RK+G+E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LR
Sbjct: 656  MANIPTYCARKHGEEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLR 715

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKKI+ EM+KQ   F++G+ KNG+ K  A  IFELLAKFADYGFNKSHAAAYA++SY
Sbjct: 716  RAMGKKIRAEMEKQHAIFVAGSVKNGVPKGQAETIFELLAKFADYGFNKSHAAAYALVSY 775

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA+MK HYP+EFLAASMTL+M N +K+ +F  +A++  I++  PS+N     F+V    
Sbjct: 776  QTAYMKAHYPIEFLAASMTLDMSNTDKLSEFRSEAQRLEIKVEAPSINRSGATFEVSGGV 835

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I Y+LAA+KGVG      I+EA  +  F SL DF +RV  + +N+RV+ESL  AGA D F
Sbjct: 836  ICYALAALKGVGAQAVEQIVEARKNGLFTSLADFAARVPPRAVNKRVIESLAAAGAFDAF 895

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +R ++    + I    Q   +       ++F       +  I L +      S R + 
Sbjct: 896  EPNRARVFAGAEAILAACQRSHEAAMLGQNDMFGGMAD--APAIMLPQAEPWLPSDRLKR 953

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKG 1012
            E   +GF+ SGHPLD Y   L+++ ++ + E   A   G    R+AA VVS+ +++T+ G
Sbjct: 954  EYDAVGFFLSGHPLDDYATALKRLRVQSWAEFSRAVKTGATAGRVAATVVSRMERRTKTG 1013

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +++G +  S+P   +EA  F
Sbjct: 1014 NKMGIIGLSDPTGHFEAVLF 1033


>gi|226323536|ref|ZP_03799054.1| hypothetical protein COPCOM_01311 [Coprococcus comes ATCC 27758]
 gi|225208220|gb|EEG90574.1| hypothetical protein COPCOM_01311 [Coprococcus comes ATCC 27758]
          Length = 1159

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1046 (36%), Positives = 574/1046 (54%), Gaps = 38/1046 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G+  +   + ++      A AITD   ++  ++F + A AAGI P+
Sbjct: 3    FAHLHVHTEYSLLDGSNKIKEYVARVKELGMTAAAITDHGVMYGVIDFYRAARAAGINPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +        T  G+        +VLL     GY  L+++VSR +  +      R
Sbjct: 63   LGCEVYVAPGSRFDKTAVGR-DEDRYYHLVLLAENNTGYANLMKIVSRAFT-EGYYYKPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +    L+    EG+I L+   +G + R       +  +K  L ++++FG    ++ LQ H
Sbjct: 121  VDYELLETYH-EGIIALSACLAGEVQRNLARGMYEEGKKAALHYEQIFGKGNFFLELQDH 179

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     Q+++L+    + LVATN+  +   ED + HD+L+ +     ++ +DR R 
Sbjct: 180  GIPEQRTVNQQLMRLSQEIGIDLVATNDVHYTYAEDEKPHDILLCLQTGKKLADEDRMRY 239

Query: 249  T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                +Y+K++ EM ++F   PEALENT +IA RC   ++     LP+F   E        
Sbjct: 240  EGGQYYVKSKEEMAALFPYAPEALENTQKIADRCHVEIEFGVTKLPKFDVPEGF----TS 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L      GL+ R  +             +RL++EL VI  M +  YFLIV DFI +A
Sbjct: 296  WEYLNKLCFDGLKRRYGEDPDPALV------ERLNYELGVIKSMGYVDYFLIVWDFIHFA 349

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N I VGPGRGS AGS+ AY L IT+IDP+R+ LLFERFLNP+R+SMPD D+DFC +RR
Sbjct: 350  KSNGIMVGPGRGSAAGSIVAYTLAITNIDPIRYQLLFERFLNPERVSMPDIDVDFCFERR 409

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RV QI+TFG+LQA+  LRDVGR + +PY+ VD + K+IP +    +
Sbjct: 410  QEVIDYVVRKYGKDRVVQIVTFGTLQARGVLRDVGRVMDLPYAFVDSIAKMIPKELNITL 469

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +++  +   ++    DP V  L+++S++LEGL RH S HAAG+VI  + + + VP+  
Sbjct: 470  D-KSLKMNHELKKLYDEDPQVKELIDMSKRLEGLPRHTSMHAAGVVISQKDVDEYVPLAL 528

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI-PFDDH 606
                +  VTQF M  +E+ GL+K DFLGL+TLT++Q ++  + +      ++    ++D 
Sbjct: 529  GA-DNNVVTQFTMTTLEELGLLKMDFLGLRTLTVIQDAIRLVEKSTGVKLVTEKLNYNDK 587

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
                 + T  T GIFQ+ES+GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   KN
Sbjct: 588  AVLDYIGTGKTDGIFQIESAGMKSFMKELRPQSLEDIIAGISLYRPGPMDFIPQYIKGKN 647

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E I    P + P+L  T G I+YQEQVMQI + L+GYSL  +D++RRAM KK  + M 
Sbjct: 648  HPELITYECPQLKPILAPTYGCIVYQEQVMQIVRDLAGYSLGRSDLVRRAMSKKKGDVMQ 707

Query: 727  KQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            ++++ F        I G  KNGI + +A  I++ +  FA Y FNKSHAAAYAV+SYQTA+
Sbjct: 708  RERQNFVYGNEEEGIPGCVKNGIDEKVANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTAY 767

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YPVE++AA MT  +DN  K+ ++    RQ  I I+PP +N    DF V +  I Y 
Sbjct: 768  LKYYYPVEYMAALMTSVIDNPGKVAEYIYTCRQMGISILPPDINRGVGDFSVDNGNIRYG 827

Query: 839  LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            LAAIKGVG      I+    +   F  L+DF  R+  K++N+R +E+ + +GA D    +
Sbjct: 828  LAAIKGVGRPVIEQIIRDREEHGTFRDLKDFLERLSGKEVNKRAVENFIKSGAFDSLKGT 887

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENE 955
            R Q +     I       +KN      ++F    ++     ++TL              E
Sbjct: 888  RKQFMIIYVQIMDQVAQNKKNSLAGQMSLFDIVDDEQKKEFEVTLPDVGEYQKETMLAFE 947

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQK 1007
            + VLG Y SGHPL+ Y+   RK       +              G+   +  M+ SK  K
Sbjct: 948  KEVLGVYISGHPLEEYEEKWRKSISATTLDFQLDEETGRTKVRDGSREIIGGMITSKMIK 1007

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T+K   + ++T  +     E   FP
Sbjct: 1008 YTKKNQTMAFITVEDLLGTVEVVIFP 1033


>gi|327399548|ref|YP_004340417.1| DNA polymerase III subunit alpha [Hippea maritima DSM 10411]
 gi|327182177|gb|AEA34358.1| DNA polymerase III, alpha subunit [Hippea maritima DSM 10411]
          Length = 1133

 Score =  799 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1033 (39%), Positives = 612/1033 (59%), Gaps = 32/1033 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL  HS YSLL+GA  + ++++K      PA+A+TD  N+F ALEF + A + GI+P
Sbjct: 2    AFVHLHNHSEYSLLDGASRIKHMVEKAKNSGMPAVALTDHGNMFGALEFYKTAKSNGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +  I        T            I LL    +GY+ ++ L S  +L        
Sbjct: 62   ILGFEGYISP------TTLDDKQTKGNYHITLLAKNKKGYENIMYLCSMAFLK-GFYYKP 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            RI  + L+E  +EG+I  +    G +      N  + A+K +  +K++FG +  ++ + R
Sbjct: 115  RIDKNLLRE-HSEGIIAGSACLHGEVQLRLLDNDFEGAKKVVQEYKEIFGKENFFLEIMR 173

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+ R  + +++L    + P+VATN+  +L++ED  A D L+ V  +  +  +DR +
Sbjct: 174  HGLEDQQRIDKEIIRLGLETDTPIVATNDCHYLNKEDAIAQDALLCVQTNKHLDDQDRMK 233

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + + + Y K   EM+ +F D PE + N+  IA  C+  L++     P +   +  D    
Sbjct: 234  MGSQEFYFKTEEEMLEVFKDNPEFVHNSKVIADMCNVELELGKLAPPHYRTPDGSD---- 289

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E+  LR  A  GLE + A          + Y++RL+ EL +I +M FSGYFLIV DF+ +
Sbjct: 290  EKEYLRRLAYKGLEEKTAGF---DNGKKELYKKRLEHELAIIEQMGFSGYFLIVWDFVNY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+N IPVGPGRGS AGS+ +Y++ ITDIDP++++LLFERFLNP+R++MPD D+DFC +R
Sbjct: 347  AKRNGIPVGPGRGSAAGSLVSYSIGITDIDPIKYNLLFERFLNPERVTMPDIDVDFCAER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV+ KYG   VAQ+ITFG++ AKA +RDV R +  PY + DR+ K+I   P   
Sbjct: 407  RDEVIHYVREKYGEYNVAQVITFGTMGAKAVVRDVARVMGFPYKEADRIAKMI---PNGE 463

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                AI  +++ ++    D +V +L EIS+ LEG+ RHAS HAAG+VI   P+ +  P+Y
Sbjct: 464  DLDGAIKSNTQLKQEIEKDDNVKKLFEISKTLEGVKRHASIHAAGVVISTEPIYKSCPLY 523

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            +    D    QF+  ++E  GLIKFDFLGLK LT++  ++  +       D+S IP DD 
Sbjct: 524  KAPGEDTIAVQFSKDFLEDIGLIKFDFLGLKNLTVIDTTVKLIGN---GFDISKIPLDDK 580

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664
            ETY LL    TLG+FQLESSGM++ +  ++P   ED+IALV+LYRPGP+ + +   + +R
Sbjct: 581  ETYKLLQKGDTLGVFQLESSGMQRLIMDLKPTVFEDLIALVALYRPGPLGSGMVQDFIDR 640

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GK+ I    P ++ +LK+T G+I+YQEQVMQIA  L+GYSL EAD+LRRAMGKK KE 
Sbjct: 641  KHGKKPIEYPLPELEGILKDTYGIILYQEQVMQIASKLAGYSLGEADILRRAMGKKKKEV 700

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MD+Q+  F+  A + G+SK  A  IF+L+AKFA+YGFNKSH+AAYA I+YQTA++K HYP
Sbjct: 701  MDQQRGIFVKRAVERGVSKEKAEEIFDLMAKFAEYGFNKSHSAAYAYIAYQTAYLKAHYP 760

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLA 840
              F++A +T E +N + I K+ ++  +  I ++PP +N    DF V +      I +  +
Sbjct: 761  AYFMSALLTSEKNNTDNIAKYIEECNRMKITVLPPDINDSFHDFAVAEKDGKKVIRFGFS 820

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIK VG     +I+E   +  F+S+ DF  R D++K+N++VLESL+ +G  D    +R  
Sbjct: 821  AIKNVGDAAIENIIEIRKESKFESIFDFLKRTDTRKVNKKVLESLIKSGCFDSLHQNRAT 880

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            LL S+D +  +     K    K   +F   K        L            E E+ +LG
Sbjct: 881  LLASVDVLLDWVSTNAKKANKKMVALFGSTKQ-EEAYPELIDVEELTQEKILEYERELLG 939

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            F+ S +PL  Y+ ++  + I    E+ +T+    + +A + V+ ++ KT++   +  V F
Sbjct: 940  FFVSSNPLSKYENMVNAV-ITADSETASTVFDKEVVMAGIPVAIRKMKTKRKESMAIVKF 998

Query: 1021 SEPAKEYEANFFP 1033
             +    +EA  FP
Sbjct: 999  MDLKGTFEATVFP 1011


>gi|197303992|ref|ZP_03169024.1| hypothetical protein RUMLAC_02729 [Ruminococcus lactaris ATCC 29176]
 gi|197296960|gb|EDY31528.1| hypothetical protein RUMLAC_02729 [Ruminococcus lactaris ATCC 29176]
          Length = 1157

 Score =  799 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1047 (35%), Positives = 581/1047 (55%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F ++A   GI P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMYGVIDFYREARKQGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +           G         +VLL    EGY+ L ++VS+ + ++      
Sbjct: 62   ILGCEVYVAPNSRFDREVTGG--DDRYYHLVLLAENNEGYENLTKIVSKGF-VEGYYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L+    +G+I L+   +G + R       + A+ R L ++++FG    ++ LQ 
Sbjct: 119  RVDKELLRTYH-KGIIALSACLAGEVPRYLTKGMYEEAKDRALEYQEIFGKGNYFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+     Q+++L+    + LVATN+  +   +D +AHD+L+ +     +S ++R R
Sbjct: 178  HGIPDQQLVNQQLMKLSQETGIELVATNDVHYTYADDEKAHDILLCIQTGKKLSDENRMR 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  EM ++F    +ALENT +IA RCS  ++     LP++   E       
Sbjct: 238  YEGGQYYVKSEEEMAALFPYARQALENTQKIADRCSVEIEFGVTKLPKYDVPEG----YT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L+     GL+             +Q+ + RL +EL+ I  M +  YFLIV DFI++
Sbjct: 294  SWEYLQKLCYEGLDQ-------RYRTPSQELKDRLAYELDTIRHMGYVDYFLIVWDFIKY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + I VGPGRGS AGS+ +Y L IT IDP+ + LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  AKDHGIAVGPGRGSAAGSIVSYCLGITTIDPIHYQLLFERFLNPERVSMPDIDVDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG + VAQI+TFG+L A+  +RDVGR + +PY+ VD + K+IP +    
Sbjct: 407  RQEVIDYVTRKYGKDCVAQIVTFGTLAARGVIRDVGRVMDLPYAYVDSIAKMIPQELGIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   R+   +D +V  L++++++LEGL RH S HAAG+VI  +P+ + VP+ 
Sbjct: 467  ID-KALQMNPELRKLYESDETVTHLIDMAKRLEGLPRHCSMHAAGVVICQKPVEEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            R        TQF M  +E+ GL+K DFLGL+TLT++Q ++    ++   + +  I ++D 
Sbjct: 526  RAA-DGTITTQFIMTTLEELGLLKMDFLGLRTLTVIQNAVQLARKKQPDLQIDKIDYNDK 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
                 + T  T GIFQLES GM+  ++ +QP  +ED+IA +SLYRPGP+D I  Y   KN
Sbjct: 585  AVLDYIGTGKTEGIFQLESGGMKNFMKELQPHSLEDVIAGISLYRPGPMDFIPQYIRGKN 644

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +  I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D+LRRAM KK    M+
Sbjct: 645  DRSSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKAAVME 704

Query: 727  KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K+++ F+         G  KNGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTAW
Sbjct: 705  KERKTFVYGDEETGVPGCIKNGIDEQTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTAW 764

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YPVE++AA MT  +DN  K+ ++    RQ  I+I+PP +N    DF V    I Y 
Sbjct: 765  LKYYYPVEYMAALMTSVIDNPTKVAEYIYVCRQMGIKILPPDINKGEADFSVDGGDIRYG 824

Query: 839  LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKL-NRRVLESLVFAGALDCFGY 896
            LAAIK +G    R I+    +   F +LEDF +R+ S++L N+R++E+L+ AGALD  G 
Sbjct: 825  LAAIKSIGRPVIRAIVNDRKELGEFRNLEDFITRISSRELMNKRLVENLIKAGALDVLGG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     I  + Q  +KN      ++F    E+     +I +              
Sbjct: 885  TRKQFMSIYIQIVDHMQQEKKNSMVGQMSLFDMVSEEQKEEFQIRMPDVGEYTKENLLGF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPL+ Y+   RK+      +              G    +  ++  K  
Sbjct: 945  EKEVLGVYVSGHPLESYEEEWRKVISATTADFQVDPEVGYTKVRDGAREIIGGIIAEKTV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + ++T  +     E   FP
Sbjct: 1005 KHTKTNQMMAFLTVEDLFGTVEVVVFP 1031


>gi|115524557|ref|YP_781468.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisA53]
 gi|115518504|gb|ABJ06488.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisA53]
          Length = 1165

 Score =  799 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 535/1035 (51%), Positives = 695/1035 (67%), Gaps = 13/1035 (1%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL VHS+YSLL+G++ +  + D   AD QPA+A+TDT+N+F ALEFS K   
Sbjct: 1    MSNA-GFVHLHVHSAYSLLKGSIKIGKLADLAKADHQPALALTDTDNMFGALEFSDKMAG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPI+GC+L ID  D            P+   IVLL S   GY+ L++L SR +L   
Sbjct: 60   AGIQPIVGCELAIDFGDVDPTARNALAAGPS--RIVLLASRERGYRSLMKLNSRAFLETP 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              Q   I L WL +   E LI L+GG  GPI  A   +   +AE R      LFGDRLY+
Sbjct: 118  VNQVPHIKLDWLLDE-AEDLIALSGGPDGPISLAIAADQQALAETRCERLASLFGDRLYI 176

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH    +R  E  ++ LAY   LPLVATN   F S +DYEAHD L+ +A   ++++ 
Sbjct: 177  ELQRHGVDAERRVEPALIDLAYAKGLPLVATNEPYFASTDDYEAHDALLCIASGKLIAET 236

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD-- 301
            DR ++TPDH  K R+EM  +F+DLPEAL +TVEIA RC+F  +   PILP F        
Sbjct: 237  DRVQLTPDHRFKTRAEMAVLFADLPEALASTVEIAERCAFRPKTRKPILPFFTVGAGTGD 296

Query: 302  -DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D    E  ELR +A  GL  RL    +A+G   +DYR RL FEL+VI RMK++GYFLIV
Sbjct: 297  TDAASLEAEELRVQAERGLAHRLEVHGLAQGVSEEDYRARLAFELDVITRMKYAGYFLIV 356

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+WAK+  IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+SMPDFDI
Sbjct: 357  SDFIKWAKQQGIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERVSMPDFDI 416

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQDRR EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P
Sbjct: 417  DFCQDRRGEVITYVQERYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVP 476

Query: 481  NDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +PA PVS  QAI  + + +  R  DP V R  +I+Q+LEGL RHASTHAAGIVIGDRPL
Sbjct: 477  QNPAAPVSLKQAIEGEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPL 536

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            S+LVP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L QRGV V L 
Sbjct: 537  SELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRGVHVALP 596

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +P DD +T+ +L     +G+FQLES GMR+AL  M+PD  EDIIALV+LYRPGP+ NI 
Sbjct: 597  TLPLDDPDTFTMLARGDVVGVFQLESQGMRRALIDMRPDRFEDIIALVALYRPGPMANIP 656

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  RK+G E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL EAD+LRRAMGK
Sbjct: 657  TYCARKHGDEEPEYLHPILEPILKETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMGK 716

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KI+ EM+KQ+  F+ GA KNG+ K  A  IF+LLAKFADYGFNKSHAAAYA++SY TA+M
Sbjct: 717  KIRAEMEKQRAIFVDGAMKNGVPKGQADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYM 776

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYPVEFLAASMTLE+ N +K+ +F  +A++  I++  PSVN     F+V D  I+Y+L
Sbjct: 777  KAHYPVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVADGTIFYAL 836

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            A +KGVG      I+ A     F SL DF ++V+ + +N+RV+E L  AGA D    +R 
Sbjct: 837  AGLKGVGQQAVEQIVAARQGGAFTSLADFAAKVNPRAINKRVIECLAAAGAFDQINPNRA 896

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
             +    + I    Q   + +     ++F       +  I L        + R   E   +
Sbjct: 897  AVSGGAEAILAACQRHHEAQVVGQNDMFGGSAD--APSIMLPPLEAWLPAERLRREYDAI 954

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGW 1017
            GF+ SGHPLD Y   L+++ ++ + E   A   G    ++AA VVS+ +++T+ G+++G 
Sbjct: 955  GFFLSGHPLDDYAVALKRLRVQSWAEFCRAVKSGATAGKVAATVVSRMERRTKTGNKMGI 1014

Query: 1018 VTFSEPAKEYEANFF 1032
               S+    +EA  F
Sbjct: 1015 FGLSDATGHFEAVLF 1029


>gi|319783852|ref|YP_004143328.1| DNA polymerase III subunit alpha [Mesorhizobium ciceri biovar
            biserrulae WSM1271]
 gi|317169740|gb|ADV13278.1| DNA polymerase III, alpha subunit [Mesorhizobium ciceri biovar
            biserrulae WSM1271]
          Length = 1175

 Score =  799 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 581/1029 (56%), Positives = 752/1029 (73%), Gaps = 8/1029 (0%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS+YSLLEGAL +  ++     D+ PAIA+TDTNNLF ALEF+QKA   GIQPI
Sbjct: 29   FVHLRVHSAYSLLEGALQIGKVVAHAVKDEAPAIAVTDTNNLFGALEFAQKAVKDGIQPI 88

Query: 71   IGCQLDIDM-QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IGCQ  +    +N       +   P +  +VLL +T  GY  L+ LVSR+YL     ++V
Sbjct: 89   IGCQTALAFSGENSDGQRDRRRQGPDMRPVVLLAATEAGYSNLVRLVSRVYLETPPGEAV 148

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    ++    +GLI L+GG  GPI  A   +   +AE RLLT K +FGDRLYV L R 
Sbjct: 149  HLTTEMMEGY-CDGLICLSGGPRGPIGTALKEDRRDLAEARLLTLKDMFGDRLYVELDRV 207

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             GYDR  E   + LAY HELPLVATN + F S +DY+AHD L+A+A  +VV+  +R R++
Sbjct: 208  SGYDRVIEKSSIDLAYAHELPLVATNEAFFSSRDDYDAHDALIAIAEGSVVAADNRRRLS 267

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ---KE 306
            PD++L+++++M  +F+DLPEA++NTVEIA RCS+  +   PILPRF   +  D     + 
Sbjct: 268  PDNFLRSQADMARLFADLPEAIDNTVEIALRCSYYPKNRNPILPRFTGGDVADNDAAVQA 327

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E +EL  +A  GL+ RLA      GY  + YR+RL+FEL +I +MKF GYFLIVADFI+W
Sbjct: 328  EADELARQAHEGLDARLAMHGPTAGYTVEQYRERLNFELGIITKMKFPGYFLIVADFIKW 387

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IPVGPGRGSGAGS+ AY+ TITDIDPLRFSLLFERFLNPDR+SMPDFDIDFCQDR
Sbjct: 388  AKAQGIPVGPGRGSGAGSLVAYSTTITDIDPLRFSLLFERFLNPDRVSMPDFDIDFCQDR 447

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVIRYVQ KYG ++V QIITFG+LQA+A LRDVGR LQMPY QVD+L K++P +PA+P
Sbjct: 448  REEVIRYVQQKYGRDQVGQIITFGTLQARAVLRDVGRVLQMPYGQVDKLSKMVPQNPANP 507

Query: 487  VS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V    AIA++ RF E    +P V  LL+++QKLEGLYRHASTHAAGIVIGDRPLS+LVPM
Sbjct: 508  VKLADAIANEPRFAEEAEREPIVQTLLDMAQKLEGLYRHASTHAAGIVIGDRPLSELVPM 567

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            YRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++  + +RG+++DL+ IP DD
Sbjct: 568  YRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLETAVKLIRRRGIEIDLATIPLDD 627

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             ETY +L+    +G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN RK
Sbjct: 628  PETYAMLSRGEVVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPTYNARK 687

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+E++ SIHP ID ++KETQGVI+YQEQVMQIAQ LSGYSL EAD+LRRAMGKKI+ EM
Sbjct: 688  HGEEEMASIHPKIDHLVKETQGVIVYQEQVMQIAQELSGYSLGEADLLRRAMGKKIRAEM 747

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            DKQ+ERF+SGA + G+ K  A  IF+LLAKFADYGFNKSHAAAYAV+SYQTA++K HYPV
Sbjct: 748  DKQRERFVSGAVERGVGKPQADFIFDLLAKFADYGFNKSHAAAYAVVSYQTAYLKAHYPV 807

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EFLAASMTL+M N +K+  F QDA +  I+++ PSV +    F+VG+NRIYYSLAA+KGV
Sbjct: 808  EFLAASMTLDMGNTDKLADFRQDALRLGIEVLAPSVTSSFRPFEVGENRIYYSLAALKGV 867

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G     HI+    +KPF +L DFC RVD K + +RV ESL+ AGALDCFG+ R  ++  +
Sbjct: 868  GDAAVEHIVAQRGEKPFKNLADFCERVDPKIVGKRVFESLIMAGALDCFGHDRASMMAGV 927

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            + +   A   ++N  +   +IF    G  S  + L       ++ R   E +V+GFY S 
Sbjct: 928  ERMMGLASLAQQNAVSGQHDIFGASLGAQSQALNLPATEPWLAADRLHREFQVVGFYLSA 987

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            HPLD YK  L+KM ++ + E  A ++      RLA  V SKQ++KTR G+++G + FS+ 
Sbjct: 988  HPLDEYKAALQKMRVQTWAEFSAAVKRGAAAGRLAGTVTSKQERKTRTGNKMGVIAFSDT 1047

Query: 1024 AKEYEANFF 1032
            + +YEA  F
Sbjct: 1048 SGQYEAVLF 1056


>gi|307692527|ref|ZP_07634764.1| DNA polymerase III DnaE [Ruminococcaceae bacterium D16]
          Length = 1155

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1050 (35%), Positives = 574/1050 (54%), Gaps = 43/1050 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ +SLL+GA  +  ++ ++    Q A+AITD   ++  ++F +    AGI+P
Sbjct: 2    SFVHLHLHTEFSLLDGACRIQKLVQRVKDLGQEAVAITDHGVMYGVIDFYRACKGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +   +   +          +VLL    EGY+ L  +VS+ +L +      
Sbjct: 62   IIGCEVYVAPRGRTRFQ-KVHEYDAAFSHLVLLCRNEEGYRNLSYMVSQGFL-EGFYIKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
            RI L  L+E    GLI L+    G I +         A++  L  ++LFG+   Y+ LQ 
Sbjct: 120  RIDLDLLRE-HCGGLIALSACLGGEIPKLLMAGDYDKAKEVALEMRELFGEDGYYLELQD 178

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H     +     +++L     +PLV TN++ +L  ED E  D+LM +     V    R +
Sbjct: 179  HNIPAQKKVNEGILRLHEETGIPLVCTNDAHYLRREDAEMQDILMCIQMGKTVDDPGRMK 238

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 +     E ++      EAL+NT +IA+ C+         LP F   E        
Sbjct: 239  FETQEFYVKSEEEMAAL-FPREALDNTAKIAQLCNVDFTFGKYHLPHFQLPEGWSDGY-- 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
                    + G   R             +YR++LD+E+ +I +M F  YFLIV+DFI +A
Sbjct: 296  -AYFEKLCLDGFRWRYPD-------EPAEYRKQLDYEMAMIQKMGFVDYFLIVSDFIAYA 347

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K + IPVGPGRGS AGS+ +Y L ITD+DP++++L FERFLNP+R++MPD DIDFC  RR
Sbjct: 348  KGHGIPVGPGRGSAAGSMVSYCLNITDLDPMKYNLYFERFLNPERVTMPDIDIDFCIRRR 407

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA--H 485
             EVI YV  KYG + VAQI+TFG++ A+AA+RDVGR L MPY+ VD + K IP+ P   H
Sbjct: 408  QEVIDYVARKYGADHVAQIVTFGTMAARAAVRDVGRVLNMPYADVDVIAKQIPSGPGALH 467

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                +A+      +E+  +D  V +L++ +  +EG+ R+ STHAAG+VI  RP+S  VP+
Sbjct: 468  ITLEEALKLSKPLKESYDSDYKVKKLIDTAMAIEGMPRNTSTHAAGVVITSRPVSDYVPL 527

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                  DL VTQ+ M  +E+ GL+K DFLGL+ LT+L  ++  + ++    D+  IP DD
Sbjct: 528  --AKNDDLVVTQYIMTTLEELGLLKMDFLGLRNLTVLDDAVKLVRRKEPDFDIHNIPEDD 585

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T+ +++   T G+FQ+ESSGM     G++P  IED+ A+V+LYRPGP+++I  + + K
Sbjct: 586  EATFRMISEGRTSGVFQMESSGMTGVCVGLKPHSIEDLTAIVALYRPGPMESIPRFISCK 645

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  EK+   HP + P+L  T G I+YQEQV+QI Q L GYSL +AD++RRAM KK  +++
Sbjct: 646  NNPEKVTYKHPSLVPILSNTYGCIVYQEQVIQIFQQLGGYSLGQADMVRRAMSKKKVKDI 705

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +K++E F+         G + NGI + +A +I++ +  FA+Y FNK+HA  YA+++YQTA
Sbjct: 706  EKERETFLHGDPERNIAGCAANGIPENVAQSIYDEIYDFANYAFNKAHAVCYALVAYQTA 765

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W K H+P E++AA +T  +D+ EK+ ++  + ++++IQ++PP VN    +F V    I +
Sbjct: 766  WFKCHHPKEYMAALLTSVLDSSEKVAEYIAECKEWDIQLLPPDVNESETNFTVSPQGIRF 825

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LAA+KGVG +    ++E      PF    DFC R+    LNRRVLESL+ AGA D  G 
Sbjct: 826  GLAALKGVGRSVMNAMLEERVKHGPFTDFMDFCDRMFDHDLNRRVLESLIKAGAFDRMGC 885

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENI----FAHEKGTFSDKITLEKFSVENSSVRF 952
             R QL+Q    +        K       ++        +      + L            
Sbjct: 886  RRSQLMQVFGQVLDGIAASRKRNVEGQMDLFGFGGGEGESAPLPTLHLPDIPEYTPQELM 945

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT----------IRGNNIRLAAMVV 1002
              E+ V G Y +GHP+D Y+ I RK G       +              G  + +A ++ 
Sbjct: 946  TMEKEVTGLYLTGHPMDAYREIARKRGAVTIGSILNDFDGEEGPQRFRDGERVTVAGVIA 1005

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + + + TR  + + +V   +     E   F
Sbjct: 1006 TYKTRTTRNNTLMAYVNLEDDTASMELLCF 1035


>gi|256827913|ref|YP_003156641.1| DNA polymerase III, alpha subunit [Desulfomicrobium baculatum DSM
            4028]
 gi|256577089|gb|ACU88225.1| DNA polymerase III, alpha subunit [Desulfomicrobium baculatum DSM
            4028]
          Length = 1151

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1040 (39%), Positives = 601/1040 (57%), Gaps = 33/1040 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              F HL  HS YSLL+GA+ L ++  +       + AITD  NLF ++ F  +A   GI+
Sbjct: 2    SGFTHLHCHSEYSLLDGAIRLKDLCARAVDFGFSSAAITDHGNLFGSVPFYLEAKKHGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG ++ I            +        +VLL     GY  L+++VS  +L +     
Sbjct: 62   PIIGSEVYIADD-------MFERENKKRFHLVLLAQNLIGYHNLVKIVSAGFL-EGFYYK 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+   +L+   +EGLI L+    G +  A    +   A  +   + ++F DR Y+ LQ 
Sbjct: 114  PRVDKKYLRA-HSEGLICLSACLQGEVPYALRHGTFDSALLKAREYMEIFPDRFYLELQS 172

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++     ++++LA    LPLVATN+  +L ++DYEAHD+L+ V    + S+K R +
Sbjct: 173  NGLKEQEVVNDRLMELANETGLPLVATNDCHYLGKDDYEAHDILLCVGTGKIASEKQRLK 232

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + Y K   EM + F+  PEA+EN   IA  C   L++     P +   E       
Sbjct: 233  FDTNEFYYKAPEEMEAAFAHCPEAVENAGRIADMCEVELKLKQHFFPVYDVPEGV----T 288

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + E R  +  GL+ R+A  A+        YR+RL+ EL VI    F  YFLIV DFI W
Sbjct: 289  LDQEFRRLSEEGLKERIA--ALPYEVDESVYRERLELELGVIIEKGFPAYFLIVQDFINW 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK  NIPVGPGRGS AGS+ +YAL ITD+DP+R++L FERFLN +R SMPD D+DFC +R
Sbjct: 347  AKSKNIPVGPGRGSAAGSLVSYALRITDLDPIRYALFFERFLNVERASMPDIDVDFCYNR 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI+YV  KYG + VAQI+ FG+++AK A+RDV RAL +     DR+ KLIP+D    
Sbjct: 407  RDEVIKYVSEKYGADHVAQIVAFGTMKAKGAIRDVARALDVSLKDADRIAKLIPDDLKMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            ++ +A+ ++   R    +DP   +L +++++LEGL RH+S HAAGIVI  +P+ + +P++
Sbjct: 467  LT-KALDEEPELRNLIDSDPQYKKLYDVARRLEGLARHSSIHAAGIVISQKPMVEYLPLH 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDD 605
            +  ++   VTQ +MK +E  GLIKFDFLGLKTLT++  +L  + +       L  +P DD
Sbjct: 526  KG-KNGEVVTQLDMKKVELIGLIKFDFLGLKTLTVIDDALKLIRKNNKPVPILEKLPLDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN-- 663
             +T+ LL    T G+FQLES GMR+ L G++P C EDIIAL++LYRPGP+++ +V +   
Sbjct: 585  PQTFELLCRGETDGVFQLESDGMRRVLRGLKPSCFEDIIALLALYRPGPLESGMVDDFIG 644

Query: 664  RKNGKEKIVSIHPLI----DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            RK+G  K+      +     P+L++T GVI+YQEQVM+IA  L+ YSL E D LRRAMGK
Sbjct: 645  RKHGLRKVEYEFEELAPVVHPILEDTYGVILYQEQVMKIASDLAKYSLGEGDNLRRAMGK 704

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K   EM KQ+ RF+ GA +N IS+  A  IF+L+ KFA YGFNKSH+AAYAVISYQTA++
Sbjct: 705  KDPAEMAKQRVRFLDGARENNISQEAAEYIFDLMEKFAGYGFNKSHSAAYAVISYQTAYV 764

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYP EF+AA +T E+ N +KI       R  +I+++PP VN    +F V    I Y L
Sbjct: 765  KAHYPAEFMAAIITSEVSNTDKILAHVSACRDMDIEVLPPDVNRSFNEFTVEGESIRYGL 824

Query: 840  AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            + IKGVG      I E       F SL DFC RV+ +K+N+RVL+SL+ +GA+D FG SR
Sbjct: 825  SGIKGVGEGAVESIEEEREKGGDFTSLLDFCQRVNLRKVNKRVLDSLIKSGAMDSFGCSR 884

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG------TFSDKITLEKFSVENSSVRF 952
              LL++LD +Q  AQ   K +T+   +     +           +             + 
Sbjct: 885  RALLENLDKVQAMAQKRAKRKTSGQLSFMGMVEENTCNLTGLGIEDDEAALPEFGDDEKC 944

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              E+   GF+  GHPL  ++  +R++G     +       + +++  +V S +   T+KG
Sbjct: 945  RMEKEAFGFFLIGHPLQPFRQEIRRLGYPSLAQCADLTEKSPVQVPVLVTSMKTINTKKG 1004

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
             R+ +    + +   EA  F
Sbjct: 1005 DRMAFCGIEDLSGSGEAIVF 1024


>gi|331086727|ref|ZP_08335804.1| hypothetical protein HMPREF0987_02107 [Lachnospiraceae bacterium
            9_1_43BFAA]
 gi|330409893|gb|EGG89328.1| hypothetical protein HMPREF0987_02107 [Lachnospiraceae bacterium
            9_1_43BFAA]
          Length = 1158

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1048 (35%), Positives = 577/1048 (55%), Gaps = 41/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      + AITD   +F  ++F + A AAGI P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMFGVIDFYRAAKAAGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +           G         +VLL    +GYQ L+++VS+ + ++      
Sbjct: 62   ILGCEVYVAPGSRFDHEINGGE--DRYYHLVLLAENNQGYQNLMKIVSKGF-VEGYYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            RI +  L+E   EG+I L+   +G + +       + A++  L ++ +FG    ++ LQ 
Sbjct: 119  RIDIELLEEYH-EGIIALSACLAGEVQKNLLRGMFEEAKQAALRYESIFGKGNFFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++     ++++LA    + LVATN+  +   ED + HD+L+ +     ++ ++R R
Sbjct: 178  HGLTEQADVNQRLIRLAAETGIELVATNDVHYTYAEDEKPHDILLCIQTGKKLTDENRMR 237

Query: 248  VTPDHYLKNRSE-MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y     + M+ +F    +ALENT +IA RC   ++     LP++           
Sbjct: 238  YAGGQYYVKSEQEMIELFPYARQALENTQKIADRCHVEIEFGVTKLPKYDVPGGM----T 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GLE R            ++ ++RL +EL+ I  M +  YFLIV DFI++
Sbjct: 294  SWEYLNQLCFEGLERRYPNPG-------EELKERLFYELSTIKNMGYVDYFLIVWDFIKY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ N+I VGPGRGS AGS+ +Y L IT+IDP+R+ LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 347  ARDNDISVGPGRGSAAGSIVSYCLGITNIDPIRYQLLFERFLNPERVSMPDIDIDFCFER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG++ A+  +RDVGR + +PY+ VD + K+IP +    
Sbjct: 407  RQEVIDYVVRKYGKDRVVQIVTFGTMAARGVIRDVGRVMDLPYAFVDTIAKMIPTELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +  FR+    D  V  L+++S++LEGL RH S HAAG+VI  + + + VP+ 
Sbjct: 467  ID-KALKMNPEFRKMYETDEQVKYLIDMSKRLEGLPRHTSMHAAGVVISQKSVDEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            R        TQF M  +E+ GL+K DFLGL+TLT++Q +++ + Q  GVK+D+  I ++D
Sbjct: 526  RAS-DGSITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVNLVEQATGVKLDMGEIDYND 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                  + T  T G+FQLES+GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 585  KLVLDSIGTGKTDGVFQLESAGMKNFMKELKPQSLEDIIAGISLYRPGPMDFIPQYIKGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N K  I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D+LRRAM KK  + M
Sbjct: 645  NDKGSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKADVM 704

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +++++ F+         G   NGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 705  ERERQSFVYGNIDEGVPGCLNNGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YP+EF+AA MT  ++N  K+ ++   ARQ  I+I+PP +N     F V +  I Y
Sbjct: 765  YLKYYYPIEFMAALMTSVIENPTKVSEYIYAARQMGIKILPPDINRGVSGFSVDEGNIRY 824

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKK-LNRRVLESLVFAGALDCFG 895
             LAAIK +G      I+ E   +  +  L+DF  R+  K+ LN+R +E+ + AGALD  G
Sbjct: 825  GLAAIKSIGKPVIEAIVSEREENGLYRGLKDFIERISLKEMLNKRSIENFIKAGALDNLG 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFE 953
             +R Q +     I       +K   +   ++F    E      +I L             
Sbjct: 885  GTRKQFMMIYIQIVDNVNQEKKFSMSGQMSLFDFVDEDQKKEFEIQLPDVGEYEKETLLA 944

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQ 1005
             E+ VLG Y SGHPLD Y+   +K       +              G    +  M+V K 
Sbjct: 945  FEKEVLGVYISGHPLDAYEEQWKKSVSATTLDFQLDEETNRTKVHDGAKEIIGGMIVGKT 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K T+    + ++T  +     E   FP
Sbjct: 1005 IKHTKTNQMMAFITVEDLLGTVEVVVFP 1032


>gi|229837766|ref|ZP_04457926.1| DNA polymerase III, alpha chain [Yersinia pestis Pestoides A]
 gi|229840988|ref|ZP_04461147.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Orientalis
            str. PEXU2]
 gi|229843089|ref|ZP_04463239.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Orientalis
            str. India 195]
 gi|229903544|ref|ZP_04518657.1| DNA polymerase III, alpha chain [Yersinia pestis Nepal516]
 gi|229679314|gb|EEO75417.1| DNA polymerase III, alpha chain [Yersinia pestis Nepal516]
 gi|229689965|gb|EEO82024.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Orientalis
            str. India 195]
 gi|229697354|gb|EEO87401.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Orientalis
            str. PEXU2]
 gi|229704143|gb|EEO91155.1| DNA polymerase III, alpha chain [Yersinia pestis Pestoides A]
 gi|320014193|gb|ADV97764.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Medievalis
            str. Harbin 35]
          Length = 1160

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1049 (39%), Positives = 601/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  
Sbjct: 1    MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    
Sbjct: 60   AGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL +   EGLI+L+GG  G + +     +    ++ L  +++ F D  Y+
Sbjct: 110  GAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  F+ E D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGY---HAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L  KA  GLE RL               +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GEMSTEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PLDPGMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R       
Sbjct: 523  TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA  +   F  L D C+RVD+KKLN+R+LE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F          + +     
Sbjct: 883  IMSGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +V++
Sbjct: 943  PWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|254469239|ref|ZP_05082644.1| DNA polymerase III, alpha subunit subfamily, putative [Pseudovibrio
            sp. JE062]
 gi|211961074|gb|EEA96269.1| DNA polymerase III, alpha subunit subfamily, putative [Pseudovibrio
            sp. JE062]
          Length = 1144

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 535/1032 (51%), Positives = 730/1032 (70%), Gaps = 14/1032 (1%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             SP FVHL+VHS+YSLLEGAL +  ++D  + D+QPA+AITD+ NLF ALEFS+KA  AG
Sbjct: 2    SSPGFVHLRVHSAYSLLEGALPIGKLIDLASKDEQPALAITDSGNLFGALEFSEKAFGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +QPIIGCQ+ ++ +D   +     +    V  +VLL +  EGY+ L++LVSR +L  +  
Sbjct: 62   MQPIIGCQVSVNFEDQPDV-----SGDDAVSDLVLLAANEEGYENLMDLVSRAFLDTEPG 116

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                + +S +    + G+I+LTG S GPI+         +A+ RL   +  FGDRLYV L
Sbjct: 117  FKANVPISRVLNK-SGGVIVLTGASEGPINSQLREGHVDLAKSRLELLQNTFGDRLYVEL 175

Query: 187  QRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRH    +   E +++ LAY   +P+VATN + F + +DYEAHD L+A++   V+ + DR
Sbjct: 176  QRHNMKGEEDVEPELLNLAYELNIPIVATNEAFFPNPDDYEAHDALIAISEGRVLVETDR 235

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--IEKECDDI 303
             ++TP+H  K R +M+ +FSDLPEALEN+V IA+RC +     APILPRF   + + ++ 
Sbjct: 236  RQLTPEHCFKTREQMMELFSDLPEALENSVVIAQRCHYRPLKRAPILPRFAGADADAEEA 295

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++ E  EL  +A  GL+ RL    +A     +DY  RLD+EL +I RMKF GYFLIVADF
Sbjct: 296  ERAEAEELTRQAKEGLQARLDVHGLAPDLEEKDYWDRLDYELGIIIRMKFPGYFLIVADF 355

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK  +IPVGPGRGSGAGS+ A++LTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFC
Sbjct: 356  IKWAKNEDIPVGPGRGSGAGSLVAWSLTITDLDPMRFSLLFERFLNPERVSMPDFDIDFC 415

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            Q+RR+EVIRYVQ KYG E+VAQIIT+G+LQAKA LRDVGR LQMPY QVDRL KL+P +P
Sbjct: 416  QNRREEVIRYVQRKYGREQVAQIITYGTLQAKAVLRDVGRVLQMPYGQVDRLSKLVPGNP 475

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A+P +  +A+  + R REA   +  VDRLL+++ KLEGLYRHASTHAAG+VIGDRPL QL
Sbjct: 476  ANPCTLPEALEQEPRLREAAKQEEVVDRLLKMAMKLEGLYRHASTHAAGVVIGDRPLEQL 535

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD RSD+PV QFNMKW+E AGL+KFDFLGLKTLT++  ++  + +RG++V +  IP
Sbjct: 536  VPLYRDPRSDMPVAQFNMKWVEAAGLVKFDFLGLKTLTVIDTAVSHIKKRGIEVKIEEIP 595

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  TY LL    T+G+FQLES GMR+A+ GM+PD  EDI+ALV+LYRPGP+DNI +YN
Sbjct: 596  IDDPLTYKLLAAGETVGVFQLESQGMRRAIAGMRPDRFEDIVALVALYRPGPMDNIPIYN 655

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              K+G+++   +HPL++P+L ET G+I+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI 
Sbjct: 656  AVKHGEQEPDYLHPLLEPILTETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIA 715

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EM+ Q+ RF+ GA +  + K  A  I++L+AKFA+YGFNKSHAAAYA+++YQTAW+K +
Sbjct: 716  SEMEIQRARFVEGAVEQKVDKDQAGMIYDLVAKFANYGFNKSHAAAYALVAYQTAWLKAN 775

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YPVEFLA  MTL++ N +K+  F Q+A +  I+++PP+VN   V F V D +I Y++ AI
Sbjct: 776  YPVEFLAGIMTLDLGNTDKLSDFRQEAMRMGIEVVPPNVNKSGVHFDVQDGKIVYAMGAI 835

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KGVG     HI+E   D+PF  L DF +R+  K LN+R +E+L+ AGA D    +R QLL
Sbjct: 836  KGVGEQAVEHIVEVRGDEPFKDLADFATRISPKVLNKRTIENLISAGAFDELNPNRAQLL 895

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              LD I   AQ  E+N+ +   + F  +     + + L        S R + E   +GFY
Sbjct: 896  DGLDRIIGMAQRTEENKNSGQNDFFGGDNAP--EPLILNPTDPWLPSERLQKEHAAVGFY 953

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIR-GNNI-RLAAMVVSKQQKKTRKGSRIGWVTF 1020
             S HPLD Y+ +  K+ ++ +++   +++ G++  RLA  V +KQ++KTR G+++G V  
Sbjct: 954  ISAHPLDEYRELFTKLRVQLWKDFERSVKAGSSAGRLAGTVTAKQERKTRTGNQMGIVRI 1013

Query: 1021 SEPAKEYEANFF 1032
            S+P  +YEA  F
Sbjct: 1014 SDPTGQYEAVMF 1025


>gi|225572766|ref|ZP_03781521.1| hypothetical protein RUMHYD_00957 [Blautia hydrogenotrophica DSM
            10507]
 gi|225039823|gb|EEG50069.1| hypothetical protein RUMHYD_00957 [Blautia hydrogenotrophica DSM
            10507]
          Length = 1156

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1046 (36%), Positives = 581/1046 (55%), Gaps = 40/1046 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G+  +   ++++      + AITD   ++  ++F +   AAGI PI
Sbjct: 3    FTHLHVHTEYSLLDGSNKITEYVERVKELGMDSAAITDHGVMYGCIDFYRACKAAGINPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +          +          +VLL    +GY  L+++VS+ + ++      R
Sbjct: 63   LGCEVYVAPSSRFDR--ETGAGEDRYYHLVLLAENNQGYSNLMKIVSKSF-VEGFYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            + L+ L+E   EG+I L+   +G + R       +  +K  L ++++FG    ++ LQ H
Sbjct: 120  VDLALLREYH-EGIIALSACLAGEVARYLTRGMYEEGKKAALRYEEIFGKGNFFLELQDH 178

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +     Q++++     + LVATN+  +   ED   HD+L+ +     +S ++R R 
Sbjct: 179  GISQQQTVNQQLLRMHQETGIDLVATNDVHYTYAEDEAPHDILLCIQTGKKLSDENRMRY 238

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                +Y+K+  +M  +F    EALENT +I +RC   ++     LP++   E        
Sbjct: 239  VGGQYYVKSAEQMAELFPYALEALENTYKIGQRCHVDIEFGVTKLPKYDVPEG----YTS 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L      GLE R            ++ RQRL +EL+ I  M +  YFLIV DFI++A
Sbjct: 295  WEYLNKLCFEGLEERYQP-------VTEELRQRLSYELDTIKNMGYVDYFLIVWDFIKYA 347

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            + + I VGPGRGS AGS+ +Y L IT +DP+R+ LLFERFLNP+R+SMPD D+DFC +RR
Sbjct: 348  RDHGIMVGPGRGSAAGSLVSYTLGITKLDPMRYDLLFERFLNPERVSMPDIDVDFCFERR 407

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RV QI+TFG+L A+  +RDVGR L MPYSQVD + K+IP +    +
Sbjct: 408  QEVIDYVVKKYGKDRVVQIVTFGTLAARGVIRDVGRVLDMPYSQVDTIAKMIPTELNITI 467

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A+  +    +    DP +  L++++++LEGL RH S HAAG+VI  + + + VP+ R
Sbjct: 468  D-LALKKNPELAKVYEEDPEIHHLIDMAKRLEGLPRHTSMHAAGVVISQKDVDEYVPLSR 526

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDH 606
                    TQF M  +E+ GL+K DFLGL+TLT++Q +++   A +G+ +D+  I ++D 
Sbjct: 527  AA-DGTITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVELVEADKGIHLDMDAIDYNDP 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +    L T  T G+FQLES GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y   KN
Sbjct: 586  KVLDSLGTGHTDGVFQLESGGMKSFMKELKPQSLEDVIAGISLYRPGPMDFIPQYIRGKN 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              E I    P ++P+LK T G I+YQEQVMQI + L GY+L  +D+LRRAM KK    M+
Sbjct: 646  HPETITYDCPQLEPILKATYGCIVYQEQVMQIVRNLGGYTLGRSDLLRRAMSKKKASVME 705

Query: 727  KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K+++ F+         G   NGI + IA  I++ +  FA Y FNKSHAAAYAV+SYQTA+
Sbjct: 706  KERQSFVYGNEEEGVPGCINNGIDEKIANRIYDNMIDFAKYAFNKSHAAAYAVVSYQTAF 765

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YPVEF+AA MT  +DN  K+ ++    R+  IQI+PP +N     F V    I Y+
Sbjct: 766  LKYYYPVEFMAALMTSVIDNPGKVSEYIFTCRKMGIQILPPDINRGETVFSVDHGAIRYA 825

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            LAAIK +G +    I++    +  F S++DF +R+++K +N+R LE+ + AGA DC   +
Sbjct: 826  LAAIKSIGKSVIDEIVKERKTNGEFVSMKDFVTRINNKDINKRSLENFIKAGAFDCLEGN 885

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENE 955
            R Q +     + + A   +KN      ++F    E+     +I L K    +       E
Sbjct: 886  RRQQMMVYPLVMESAIQEKKNMMAGQMSLFDLVGEEDKKDYEIQLPKVEEYDQDTLLNFE 945

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------TIRGNNIRLAAMVVSKQQK 1007
            + VLG Y SGHPL+ Y+ ++ K       +              G    +  M+  K+ K
Sbjct: 946  KEVLGIYISGHPLEKYRALMEKNVTAWTSDFQPDEETGFPKVKDGVKAIIGGMITEKKVK 1005

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             TR    + ++T  +     E   FP
Sbjct: 1006 YTRTNKVMAFLTLEDLVGIVEVVVFP 1031


>gi|153947435|ref|YP_001400012.1| DNA polymerase III subunit alpha [Yersinia pseudotuberculosis IP
            31758]
 gi|152958930|gb|ABS46391.1| DNA polymerase III, alpha subunit [Yersinia pseudotuberculosis IP
            31758]
          Length = 1160

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1049 (39%), Positives = 601/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  
Sbjct: 1    MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    
Sbjct: 60   AGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL +   EGLI+L+GG  G + +     +    ++ L  +++ F D  Y+
Sbjct: 110  GAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  F+ E D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGY---HAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L  KA  GLE RL               +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GEMSTEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PLDPGMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R       
Sbjct: 523  TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA  +   F  L D C+RVD+KKLN+R+LE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F          + +     
Sbjct: 883  IMSGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +V++
Sbjct: 943  PWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|90419565|ref|ZP_01227475.1| DNA polymerase III alpha subunit [Aurantimonas manganoxydans
            SI85-9A1]
 gi|90336502|gb|EAS50243.1| DNA polymerase III alpha subunit [Aurantimonas manganoxydans
            SI85-9A1]
          Length = 1153

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 585/1036 (56%), Positives = 748/1036 (72%), Gaps = 10/1036 (0%)

Query: 5    LEK--SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            +     P FVHL+VHS++SLLEGAL L+ I+     D  PAI I DTNNLF ALEFS+KA
Sbjct: 1    MASDTKPKFVHLRVHSAFSLLEGALKLDQIIKFAKGDDAPAIGICDTNNLFGALEFSEKA 60

Query: 63   CAAGIQPIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
              AGIQPI GCQ+D++  D       + +    ++  +VL+ +T  GY  L+E+VS  YL
Sbjct: 61   SKAGIQPITGCQIDVEFSDCEESRGGRRERSLSSIAPLVLIAATEAGYANLVEIVSLAYL 120

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                     +   WL E  +EG+I LTGG  GPI  A   + S +A  R+     +FGDR
Sbjct: 121  GHADNPRPHVLFEWL-ETRSEGIIALTGGPLGPIGSAIAADRSDLARSRMERMAPVFGDR 179

Query: 182  LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            LYV LQRH G  R  E+  +QLAY   LPLVATN   FL  +D+EAHD L+AVA + +VS
Sbjct: 180  LYVELQRHEGRSRKVEADTLQLAYDMALPLVATNEPFFLKADDFEAHDALIAVAGNRLVS 239

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            Q+DR R++ DH LK+++EM  +F+DLPEAL NTVEIA+RCS+  +  APILPRF   + D
Sbjct: 240  QEDRRRLSRDHSLKSQNEMSVLFADLPEALHNTVEIAQRCSYRPRTRAPILPRFAGADAD 299

Query: 302  DIQKEEENE--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              + E      LR +A+ GLE RLA   +A G  A+ YR+RL+FEL++I RMKF GYFLI
Sbjct: 300  AAEAEAAEVAELRRQAIEGLEARLAAHGLAPGETAESYRERLEFELSIIERMKFPGYFLI 359

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI+WAK   IPVGPGRGSGAGS+ AYALT+TD+DPLRFSLLFERFLNP+R+SMPDFD
Sbjct: 360  VADFIKWAKAQGIPVGPGRGSGAGSLVAYALTVTDLDPLRFSLLFERFLNPERVSMPDFD 419

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQDRR+EVIRYVQ KYG E+V QIITFG+LQA+A LRDVGR L+M Y QVD+LCKL+
Sbjct: 420  IDFCQDRREEVIRYVQEKYGREQVGQIITFGTLQARAVLRDVGRVLEMSYGQVDKLCKLV 479

Query: 480  PNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P +PA+PV+  QA+ ++ R +EAR  +  VDRL+ I+ KLEGLYRHASTHAAGIVIGDRP
Sbjct: 480  PQNPANPVTLAQALVEEPRLQEAREKEEIVDRLISIALKLEGLYRHASTHAAGIVIGDRP 539

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            LSQLVPMYRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT+LQK+++ +A+ G  +DL
Sbjct: 540  LSQLVPMYRDPRSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLQKAVELIARTGPTIDL 599

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            S IP DD  TY ++T   T+G+FQ+ES GMR+AL GM+PD  EDIIALV+LYRPGP++NI
Sbjct: 600  SAIPLDDARTYEMMTRGETVGVFQVESVGMRKALIGMRPDRFEDIIALVALYRPGPMENI 659

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              YN RK+G+E+   IH  I P+LKETQGVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMG
Sbjct: 660  PTYNARKHGEEEPDFIHDKIAPILKETQGVIIYQEQVMQIAQVLSGYSLGEADLLRRAMG 719

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KKI+ EMDKQ+ RF+ GA  NG+ KT +  IF+LLAKFADYGFNKSHAAAYA+++YQTA+
Sbjct: 720  KKIRAEMDKQRVRFVEGAVANGLDKTQSNMIFDLLAKFADYGFNKSHAAAYALVAYQTAY 779

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K ++PVEFLAASMTL+  N EK+  F  DA +  I+I+PPSV T    F+VG+N+I+Y+
Sbjct: 780  LKANHPVEFLAASMTLDAGNTEKLNDFRMDAMRLGIKIVPPSVQTSFRQFEVGENKIFYA 839

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            LAAIKGVG     HI+    D  F SLEDFC+R+D K +N+R LE L+ AGALDCFG+ R
Sbjct: 840  LAAIKGVGEQAVDHIVATRGDGSFQSLEDFCARIDPKIVNKRTLEFLIAAGALDCFGHER 899

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              L  ++D +  YA  V + R +   ++F    G+  + + L    +  SS +   E + 
Sbjct: 900  ALLCANIDLMASYALRVHEGRASGQHDMFGGA-GSEPEPLHLNPAQLWTSSEKLLREFQA 958

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIG 1016
            +GFY S HPLD YK  L+++ ++ + E   A  RG    +LA  V S+Q++KTR G ++G
Sbjct: 959  IGFYLSAHPLDEYKTTLKRLRVQTHAEVIHAVKRGATAGKLAGTVTSRQERKTRSGGKLG 1018

Query: 1017 WVTFSEPAKEYEANFF 1032
             +  S+P+ +YE   F
Sbjct: 1019 IIQLSDPSGQYEVVLF 1034


>gi|229522191|ref|ZP_04411608.1| DNA polymerase III alpha subunit [Vibrio cholerae TM 11079-80]
 gi|229341116|gb|EEO06121.1| DNA polymerase III alpha subunit [Vibrio cholerae TM 11079-80]
          Length = 1159

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1048 (40%), Positives = 617/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG    +          Q +     +  + LL     GY+ L  L+S+ YL   
Sbjct: 60   CGVKPIIGADFTL----------QSEEFGDDLTKLTLLAKNNVGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+
Sbjct: 110  VQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        + +A  ++LP+VATN  +F++EE +EAH++ +A+     +   
Sbjct: 169  ELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++       +       
Sbjct: 229  RRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 284  GGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +    IA +   +E   AD  V  L++  + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V DN  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + AGALD  G  R  ++ S+D+  + A    +       ++F        + +    +  
Sbjct: 883  ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ 
Sbjct: 943  EWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   +
Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|229524247|ref|ZP_04413652.1| DNA polymerase III alpha subunit [Vibrio cholerae bv. albensis VL426]
 gi|229337828|gb|EEO02845.1| DNA polymerase III alpha subunit [Vibrio cholerae bv. albensis VL426]
          Length = 1159

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1048 (40%), Positives = 617/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG    +          Q +     +  + LL     GY+ L  L+S+ YL   
Sbjct: 60   CGVKPIIGADFTL----------QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+
Sbjct: 110  VQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        + +A  ++LP+VATN  +F++EE +EAH++ +A+     +   
Sbjct: 169  ELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++       +       
Sbjct: 229  RRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 284  GGMAIEDFLVMKSREGLEERLEFLFPDPDVRAKRRPEYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +    IA +   +E   AD  V  L++  + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V DN  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + AGALD  G  R  ++ S+D+  + A    +       ++F        + +    +  
Sbjct: 883  ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ 
Sbjct: 943  EWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   +
Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|229507681|ref|ZP_04397186.1| DNA polymerase III alpha subunit [Vibrio cholerae BX 330286]
 gi|229512124|ref|ZP_04401603.1| DNA polymerase III alpha subunit [Vibrio cholerae B33]
 gi|229513887|ref|ZP_04403349.1| DNA polymerase III alpha subunit [Vibrio cholerae TMA 21]
 gi|229519259|ref|ZP_04408702.1| DNA polymerase III alpha subunit [Vibrio cholerae RC9]
 gi|229607185|ref|YP_002877833.1| DNA polymerase III subunit alpha [Vibrio cholerae MJ-1236]
 gi|255747058|ref|ZP_05421003.1| DNA polymerase III alpha subunit [Vibrio cholera CIRS 101]
 gi|262167733|ref|ZP_06035435.1| DNA polymerase III alpha subunit [Vibrio cholerae RC27]
 gi|262189888|ref|ZP_06048212.1| DNA polymerase III alpha subunit [Vibrio cholerae CT 5369-93]
 gi|14195659|sp|P52022|DPO3A_VIBCH RecName: Full=DNA polymerase III subunit alpha
 gi|229343948|gb|EEO08923.1| DNA polymerase III alpha subunit [Vibrio cholerae RC9]
 gi|229349068|gb|EEO14025.1| DNA polymerase III alpha subunit [Vibrio cholerae TMA 21]
 gi|229352089|gb|EEO17030.1| DNA polymerase III alpha subunit [Vibrio cholerae B33]
 gi|229355186|gb|EEO20107.1| DNA polymerase III alpha subunit [Vibrio cholerae BX 330286]
 gi|229369840|gb|ACQ60263.1| DNA polymerase III alpha subunit [Vibrio cholerae MJ-1236]
 gi|255735460|gb|EET90860.1| DNA polymerase III alpha subunit [Vibrio cholera CIRS 101]
 gi|262023798|gb|EEY42497.1| DNA polymerase III alpha subunit [Vibrio cholerae RC27]
 gi|262034232|gb|EEY52648.1| DNA polymerase III alpha subunit [Vibrio cholerae CT 5369-93]
          Length = 1159

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1048 (40%), Positives = 617/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG    +          Q +     +  + LL     GY+ L  L+S+ YL   
Sbjct: 60   CGVKPIIGADFTL----------QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+
Sbjct: 110  VQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        + +A  ++LP+VATN  +F++EE +EAH++ +A+     +   
Sbjct: 169  ELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++       +       
Sbjct: 229  RRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 284  GGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +    IA +   +E   AD  V  L++  + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V DN  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + AGALD  G  R  ++ S+D+  + A    +       ++F        + +    +  
Sbjct: 883  ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ 
Sbjct: 943  EWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   +
Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|90423933|ref|YP_532303.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisB18]
 gi|90105947|gb|ABD87984.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisB18]
          Length = 1185

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 535/1040 (51%), Positives = 701/1040 (67%), Gaps = 15/1040 (1%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            T  +  +  FVHL VHS+YSLL G++ +  + +   AD QPA+A+TDT+N+F ALEFS+K
Sbjct: 16   TAPMTNA-GFVHLHVHSAYSLLRGSIKVAKLCELAKADHQPALALTDTDNMFGALEFSEK 74

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
                GIQPI+GC+L +D  D         +  P+   IVLL +   GY+ LI+L SR +L
Sbjct: 75   MAGYGIQPIVGCELAVDFGDQDPNARNALSAAPS--RIVLLAARERGYRSLIKLNSRAFL 132

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                 Q+  I L WL     E LI L+GG  GPI  AF  + + +AE R      LFGDR
Sbjct: 133  ETPVNQTPHIKLDWL-NGEAEDLIALSGGPEGPISLAFTADQAGLAEARCDRLAALFGDR 191

Query: 182  LYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            LY+ LQRH    +R  E+ ++ LAY   LPLVATN   F + +DYEAHD L+ +A   +V
Sbjct: 192  LYIELQRHGVDAERRAEAALIDLAYAKGLPLVATNEPYFATNDDYEAHDALLCIAGGRLV 251

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            ++ DRP++TPDH  K R+EM  +F+DLPEAL +TVEIA RC+F  +   PILP F     
Sbjct: 252  AETDRPQLTPDHRFKTRAEMAVLFADLPEALASTVEIAERCAFRPRTRKPILPHFTLGAG 311

Query: 301  DDIQ-----KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                       E +E+R +A  GL  RL    +AKG   ++YR RL+FEL +I RM+++G
Sbjct: 312  TGSHAAAASSNEADEVRAQAEQGLIKRLQVHGVAKGATEEEYRARLEFELGIITRMQYAG 371

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV DFI+WAK+N IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+SM
Sbjct: 372  YFLIVGDFIKWAKENGIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERVSM 431

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQDRR EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L
Sbjct: 432  PDFDIDFCQDRRGEVIEYVQRRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKL 491

Query: 476  CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KL+P +PA PV+  QAI  + + +  R  DP V R   I+Q+LEGL RHASTHAAGIVI
Sbjct: 492  TKLVPQNPAAPVTLKQAIESEPKLQAFRDEDPVVARAFNIAQRLEGLTRHASTHAAGIVI 551

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
            GDRPLS+LVPMYRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT L  ++  L QRGV
Sbjct: 552  GDRPLSELVPMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLDVAVKLLKQRGV 611

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V L  +P DD +T+ +L     +G+FQLES GMR+AL  M+PD  EDIIALV+LYRPGP
Sbjct: 612  VVSLPTVPLDDPDTFAMLGRGDVVGVFQLESQGMRRALIDMRPDRFEDIIALVALYRPGP 671

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + NI  Y  RK+G E+   +HP+++ +LKET GVIIYQEQVMQIAQ+++GYSL +AD+LR
Sbjct: 672  MANIPTYCARKHGDEEPEYLHPILESILKETFGVIIYQEQVMQIAQVMAGYSLGQADLLR 731

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKKI+ EM+KQ+  FI+G+ ++G+ K  A  IFELLAKFADYGFNKSHAAAYA++SY
Sbjct: 732  RAMGKKIRAEMEKQRAGFIAGSVEHGVPKAQADAIFELLAKFADYGFNKSHAAAYALVSY 791

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TA+MK HYPVEFLAASMTLE+ N +K+ +F  +A++  I++  PSVN     F+V D  
Sbjct: 792  HTAYMKAHYPVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKLEAPSVNRSGATFEVADGV 851

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            IYY+LAA+KGVG      I+E      F SL DF ++V  K +N+RV+ESL  AGA D  
Sbjct: 852  IYYALAALKGVGAQAVELIVEGRKGGLFSSLADFAAKVSPKAINKRVIESLAAAGAFDGL 911

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +R  +    D I    Q   +       ++F       +  I L +      + R   
Sbjct: 912  NPNRAAVFGGADAIMAACQRHHEAAAMGQNDMFGGMAD--APTIMLPQLEAWLPAERLRR 969

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKG 1012
            E   +GF+ SGHPLD Y   L+++ ++ + E   A   G    ++AA VVS+ +++T+ G
Sbjct: 970  EYDAIGFFLSGHPLDDYATALKRLRVQSWAEFCRAVKSGATAGKVAATVVSRMERRTKTG 1029

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +++G +  S+P   +EA  F
Sbjct: 1030 NKMGILGLSDPTGHFEAVLF 1049


>gi|327484762|gb|AEA79169.1| DNA polymerase III alpha subunit [Vibrio cholerae LMA3894-4]
          Length = 1157

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1048 (40%), Positives = 618/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG    +          Q +     +  + LL     GY+ L  L+S+ YL   
Sbjct: 60   CGVKPIIGADFTL----------QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+
Sbjct: 110  VQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        + +A  ++LP+VATN  +F++EE +EAH++ +A+     +   
Sbjct: 169  ELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++       +       
Sbjct: 229  RRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 284  GGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +    IA +   +E   AD  V  L++  + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V DN  I Y + AIKGVG      I+EA   D  F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + AGALD  G  R  ++ S+D+  + A    +       ++F        + +    +  
Sbjct: 883  ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ 
Sbjct: 943  EWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   +
Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|154503521|ref|ZP_02040581.1| hypothetical protein RUMGNA_01345 [Ruminococcus gnavus ATCC 29149]
 gi|153795621|gb|EDN78041.1| hypothetical protein RUMGNA_01345 [Ruminococcus gnavus ATCC 29149]
          Length = 1157

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1047 (35%), Positives = 575/1047 (54%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F ++A   GI+P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYREARKQGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +           G         +VLL     GY  L+++VSR +  +      
Sbjct: 62   ILGCEVYVAPNSRFDRETAGGES--RYHHLVLLAENNTGYANLMKIVSRGFT-EGYYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L++   EG+I L+   +G + R      ++ A+K  L ++ +FG    ++ +Q 
Sbjct: 119  RVDKDLLRQYH-EGIIALSACLAGEVQRYLSRGLTEEAKKVALEYQDIFGKGNFFLEMQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++     + +QL+    + LV TN+  +   ED + HD+L+ +     +  ++R R
Sbjct: 178  HGIPEQQLVNQRQIQLSKETGIELVVTNDIHYTYAEDAKPHDILLCIQTGKKLDDENRMR 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  EM ++F    +ALENT +IA RC   ++     LP++   +       
Sbjct: 238  YEGGQYYVKSPQEMEALFPYAKQALENTQKIANRCEVEIEFGVTKLPKYDVPDGM----T 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GLE          G  +++ ++RL +EL+ I  M +  YFLIV DFI++
Sbjct: 294  SWEYLNKLCWEGLEKH-------YGEPSRELKERLRYELDTIRNMGYVDYFLIVWDFIKY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + I VGPGRGS AGS+ +Y L IT+IDP+R+ LLFERFLNP+R++MPD D+DFC +R
Sbjct: 347  AKDHGIAVGPGRGSAAGSIVSYCLEITNIDPIRYQLLFERFLNPERVTMPDIDVDFCFER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG+L A+  +RDVGR + +PY+ VD + K+IP +    
Sbjct: 407  RQEVIDYVVRKYGKDRVVQIVTFGTLAARGVIRDVGRVMDLPYAFVDSIAKMIPQELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   R+    DP V  L+++ ++LEGL RH+S HAAG+VIG R +   VP+ 
Sbjct: 467  ID-KALQMNPELRKTYENDPQVKLLIDMCKRLEGLPRHSSMHAAGVVIGQREIDDFVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            R        TQF M  +E+ GL+K DFLGL+TLT++Q ++     +  ++D+  I ++D 
Sbjct: 526  RAS-DGSITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVQLAKSKNPELDMDQIDYNDK 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +    + T  T GIFQLES GM+  ++ ++P+ +EDIIA +SLYRPGP+D I  Y   KN
Sbjct: 585  QVLSYIGTGKTDGIFQLESGGMKGFMKELKPNSLEDIIAGISLYRPGPMDFIPQYIRGKN 644

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D+LRRAM KK  + M 
Sbjct: 645  DAGSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKGDVMQ 704

Query: 727  KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K+++ F+         G  KNGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTA+
Sbjct: 705  KERQIFVYGDEENGVPGCIKNGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTAY 764

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YPVE++AA MT  ++N  K+ ++    RQ NIQI+ P +N    +F V  N I Y 
Sbjct: 765  LKYYYPVEYMAALMTSVIENPSKVAEYIYACRQMNIQILSPDINRGIGNFSVDGNNIRYG 824

Query: 839  LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSK-KLNRRVLESLVFAGALDCFGY 896
            LAAIK +G      I+E   +  PF +LEDF SR+  K  LN+R +E L+ +GALDC G 
Sbjct: 825  LAAIKSIGRPVIAAIIEDRDEFGPFKNLEDFISRMSFKDGLNKRAIEHLIKSGALDCLGG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     I  +    +K        +F    E+     +I L      +       
Sbjct: 885  TRKQFMSIYVQIVDHVNQEKKYAMTGQMTLFDMVGEEEKEQFEIKLPDVGEYSKENLLAF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------TIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPL  Y+   RK       +              G    +  M+ +K  
Sbjct: 945  EKEVLGAYLSGHPLQEYEDKWRKSISATTLDFQPDEETGRAKVHDGTREIVGGMITAKTI 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + +++  +     E   FP
Sbjct: 1005 KHTKTNQMMAFLSLEDLVGTVEVIVFP 1031


>gi|331092255|ref|ZP_08341083.1| hypothetical protein HMPREF9477_01726 [Lachnospiraceae bacterium
            2_1_46FAA]
 gi|330401687|gb|EGG81266.1| hypothetical protein HMPREF9477_01726 [Lachnospiraceae bacterium
            2_1_46FAA]
          Length = 1157

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1046 (35%), Positives = 575/1046 (54%), Gaps = 40/1046 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G+  +   + ++      + AITD   +F  ++F + A A GI+PI
Sbjct: 3    FAHLHVHTEYSLLDGSNKIKEYVARVKELGMDSAAITDHGVMFGVIDFYRAAKAEGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +  Q       +  T       +VLL    +GY+ L ++VS+ + ++      R
Sbjct: 63   LGCEVYVAPQSRFDK--EVGTREDRYYHLVLLAENNKGYENLTKIVSKAF-VEGYYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +    L++   EG+I L+   +G + +       + A K    ++K+FG    ++ LQ H
Sbjct: 120  VDYELLEQYH-EGIIALSACLAGEVQKNLLRGMYEEAVKSAKRYEKIFGKGNFFLELQDH 178

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     ++++L+    + LVATN+  +   ED + HD+L+ +     +  ++R R 
Sbjct: 179  GIPEQATVNQRLLRLSQDTGIELVATNDVHYTYAEDEKPHDILLCIQTGKKLQDENRMRY 238

Query: 249  T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                +Y+K+  EM  +F    +ALENT +IA RC   ++     LPR+            
Sbjct: 239  EGGQYYVKSPEEMAELFPYALQALENTQKIADRCDVEIEFGVTKLPRYDVPSG----YTS 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L      GL       A       ++  +RL +EL+VI +M +  YFLIV DFI++A
Sbjct: 295  WEYLNKLCFDGL-------ASRYQPVTEELGERLTYELSVIQKMGYVDYFLIVWDFIKYA 347

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            + N+I VGPGRGS AGS+ +Y L ITDIDP+R+ LLFERFLNP+R+SMPD DIDFC +RR
Sbjct: 348  RDNDIMVGPGRGSAAGSIVSYCLGITDIDPIRYQLLFERFLNPERVSMPDIDIDFCFERR 407

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RV QI+TFG++ A+  +RDVGR + +PY+ VD + K+IP +    +
Sbjct: 408  QEVIDYVVRKYGADRVVQIVTFGTMAARGVIRDVGRVMDLPYAFVDTIAKMIPTELNMTL 467

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            + +A++ +   ++    D  V  L+++S +LEGL RH S HAAG+VI  +P+ + VP+  
Sbjct: 468  T-KALSVNPELKKVYEEDAEVKELIDMSLRLEGLPRHTSMHAAGVVISQKPVDEYVPLSL 526

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                    TQF M  +E+ GL+K DFLGL+TLT++Q +     +    K+D+  I ++D 
Sbjct: 527  GA-DGAVTTQFTMTTLEELGLLKMDFLGLRTLTVIQNAAKLAEKSSGHKIDMHKINYNDK 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            E    + T  T GIFQLES+GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   KN
Sbjct: 586  EVLESIGTGKTDGIFQLESAGMKNFMKELKPQNLEDIIAGISLYRPGPMDFIPQYIKGKN 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +  I    P ++P+L+ T G I+YQEQVMQI + L+GY+L  +D+LRRAM KK  + M+
Sbjct: 646  DRGSITYDCPQLEPILESTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKADVME 705

Query: 727  KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K+++ F+         G   NGI +  A  I++ +  FA Y FNKSHAAAYAV++YQTA+
Sbjct: 706  KERQNFVYGNEEEGVPGCVANGIPEETANKIYDEMIDFAKYAFNKSHAAAYAVVAYQTAY 765

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YPVEF+AA MT  +DN  K+ ++   +RQ  I I+PP +N    +F V +  I Y 
Sbjct: 766  LKYYYPVEFMAALMTSVIDNPGKVSEYIYASRQMGIHILPPDINEGEGNFSVDNGNIRYG 825

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            LAAIK +G      I+        + +L++F  R+  K++N+R +E+ + AGA D    +
Sbjct: 826  LAAIKSIGRPVIEAIITEREIGGKYQNLKNFIERLSGKEVNKRTIENFIKAGAFDSLPGT 885

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENE 955
            R QL+     I        KN  +   ++F    E+      I L              E
Sbjct: 886  RKQLMMIYIQILDQVNKDRKNSMSGQMSLFDLVDEEQKKEFDIPLPDVKEYEKETMLAFE 945

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------TIRGNNIRLAAMVVSKQQK 1007
            + VLG Y SGHP++ Y+ + +K       +              G+   +  ++V+K  K
Sbjct: 946  KEVLGVYVSGHPMEEYEELWKKSISATTMDFQPGEETGRSKVRDGSKEIIGGLIVNKTIK 1005

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T+    + ++T  +     E   FP
Sbjct: 1006 YTKNNKVMAFLTIEDLLGTVEVVIFP 1031


>gi|15642243|ref|NP_231876.1| DNA polymerase III subunit alpha [Vibrio cholerae O1 biovar El Tor
            str. N16961]
 gi|121586281|ref|ZP_01676071.1| DNA polymerase III, alpha subunit [Vibrio cholerae 2740-80]
 gi|121726522|ref|ZP_01679771.1| DNA polymerase III, alpha subunit [Vibrio cholerae V52]
 gi|147675187|ref|YP_001217760.1| DNA polymerase III subunit alpha [Vibrio cholerae O395]
 gi|153817071|ref|ZP_01969738.1| DNA polymerase III, alpha subunit [Vibrio cholerae NCTC 8457]
 gi|153820865|ref|ZP_01973532.1| DNA polymerase III, alpha subunit [Vibrio cholerae B33]
 gi|153825312|ref|ZP_01977979.1| DNA polymerase III, alpha subunit [Vibrio cholerae MZO-2]
 gi|227082369|ref|YP_002810920.1| DNA polymerase III, alpha subunit [Vibrio cholerae M66-2]
 gi|254286447|ref|ZP_04961404.1| DNA polymerase III, alpha subunit [Vibrio cholerae AM-19226]
 gi|254849375|ref|ZP_05238725.1| DNA polymerase III subunit alpha [Vibrio cholerae MO10]
 gi|9656805|gb|AAF95389.1| DNA polymerase III, alpha subunit [Vibrio cholerae O1 biovar El Tor
            str. N16961]
 gi|121549547|gb|EAX59573.1| DNA polymerase III, alpha subunit [Vibrio cholerae 2740-80]
 gi|121630975|gb|EAX63354.1| DNA polymerase III, alpha subunit [Vibrio cholerae V52]
 gi|126512339|gb|EAZ74933.1| DNA polymerase III, alpha subunit [Vibrio cholerae NCTC 8457]
 gi|126521657|gb|EAZ78880.1| DNA polymerase III, alpha subunit [Vibrio cholerae B33]
 gi|146317070|gb|ABQ21609.1| DNA polymerase III, alpha subunit [Vibrio cholerae O395]
 gi|149740996|gb|EDM55065.1| DNA polymerase III, alpha subunit [Vibrio cholerae MZO-2]
 gi|150423396|gb|EDN15340.1| DNA polymerase III, alpha subunit [Vibrio cholerae AM-19226]
 gi|227010257|gb|ACP06469.1| DNA polymerase III, alpha subunit [Vibrio cholerae M66-2]
 gi|227014141|gb|ACP10351.1| DNA polymerase III, alpha subunit [Vibrio cholerae O395]
 gi|254845080|gb|EET23494.1| DNA polymerase III subunit alpha [Vibrio cholerae MO10]
          Length = 1164

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1048 (40%), Positives = 617/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A  
Sbjct: 6    MSD-PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 64

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG    +          Q +     +  + LL     GY+ L  L+S+ YL   
Sbjct: 65   CGVKPIIGADFTL----------QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGH 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+
Sbjct: 115  VQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYL 173

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        + +A  ++LP+VATN  +F++EE +EAH++ +A+     +   
Sbjct: 174  ELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 233

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++       +       
Sbjct: 234  RRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPT 288

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 289  GGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLI 348

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 349  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 408

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 409  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 468

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +    IA +   +E   AD  V  L++  + LEG  R+A  HA G+VI    +
Sbjct: 469  PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 527

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 528  TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 587

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 588  PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 647

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 648  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 707

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 708  GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 767

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    
Sbjct: 768  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 827

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V DN  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L
Sbjct: 828  FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKL 887

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + AGALD  G  R  ++ S+D+  + A    +       ++F        + +    +  
Sbjct: 888  ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVP 947

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ 
Sbjct: 948  EWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1007

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   +
Sbjct: 1008 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1035


>gi|183179456|ref|ZP_02957667.1| DNA polymerase III, alpha subunit [Vibrio cholerae MZO-3]
 gi|183012867|gb|EDT88167.1| DNA polymerase III, alpha subunit [Vibrio cholerae MZO-3]
          Length = 1164

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1048 (40%), Positives = 617/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A  
Sbjct: 6    MSD-PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 64

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG    +          Q +     +  + LL     GY+ L  L+S+ YL   
Sbjct: 65   CGVKPIIGADFTL----------QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGH 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+
Sbjct: 115  VQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYL 173

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        + +A  ++LP+VATN  +F++EE +EAH++ +A+     +   
Sbjct: 174  ELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 233

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++       +       
Sbjct: 234  RRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPT 288

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 289  GGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLI 348

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 349  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 408

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 409  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 468

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +    IA +   +E   AD  V  L++  + LEG  R+A  HA G+VI    +
Sbjct: 469  PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 527

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 528  TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 587

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 588  PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 647

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 648  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 707

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 708  GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 767

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    
Sbjct: 768  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 827

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V DN  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L
Sbjct: 828  FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKL 887

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + AGALD  G  R  ++ S+D+  + A    +       ++F        + +    +  
Sbjct: 888  ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVP 947

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ 
Sbjct: 948  EWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1007

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   +
Sbjct: 1008 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1035


>gi|323142354|ref|ZP_08077186.1| DNA polymerase III, alpha subunit [Phascolarctobacterium sp. YIT
            12067]
 gi|322413238|gb|EFY04125.1| DNA polymerase III, alpha subunit [Phascolarctobacterium sp. YIT
            12067]
          Length = 1135

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1041 (35%), Positives = 603/1041 (57%), Gaps = 38/1041 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K   F HL VH+ YSLL+GA  ++ ++         ++AITD   ++ A+EF Q+   
Sbjct: 1    MTK--RFTHLHVHTEYSLLDGASKIHELVAYAKELGMDSLAITDHGAMYGAVEFYQECTK 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIGC++ +    +L+  N+G      +  ++LL     GY  L+++VS   L + 
Sbjct: 59   AGIKPIIGCEVYLSKGSHLEKNNRG------MYHLILLAENDTGYHNLMKIVSIGQL-EG 111

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 R+    L+    EG+I L+   +G + +    ++ + A + +  +  +FG +  +
Sbjct: 112  FYYKPRVDKDVLRTYH-EGVICLSACVAGEVPQMILQDNLEGARRCIQEYIDIFGKENYF 170

Query: 184  VNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H   + ++  +++ QLA    L LVATN+  ++ ++D  A D+L+ +  ++ V +
Sbjct: 171  LEIQDHDLDEEHKVSAELKQLAQEFGLGLVATNDLHYVQQKDAAAQDILLCIQTTSTVDE 230

Query: 243  KDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             DR R   D +YLK+  EM ++F D PEAL NT +IA RC+  ++    +LP F   E  
Sbjct: 231  PDRMRFNNDSYYLKSYDEMEALFGDCPEALSNTNKIADRCNVKMEFGHLLLPEFPVPEGF 290

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D      + LR+                     +  R+RLDFEL++I  M ++ YFLIV 
Sbjct: 291  D----AVSYLRHLCEE-------ALPKRYEVVDEKVRKRLDFELDIINTMGYACYFLIVW 339

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI + + ++IPVGPGRGS AGS+ AY L IT+I+PLR+ LLFERFLNP+R+SMPD D D
Sbjct: 340  DFINYCRSHDIPVGPGRGSAAGSIVAYLLRITNIEPLRYHLLFERFLNPERVSMPDIDTD 399

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC  +R++V+ YV  +YG ERVAQIITFG+LQA+AA+RDVG+AL M Y +VD + KLIP 
Sbjct: 400  FCYVKRNQVLDYVVRRYGQERVAQIITFGTLQARAAVRDVGKALGMSYGEVDEIAKLIPR 459

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +  +A+     FR+A  + P V +L++++Q +EGL R+A THAAG++I    +  
Sbjct: 460  ELGITLE-KALNGSKDFRQAYDSRPEVKKLIDLAQSVEGLPRNAGTHAAGVIIAPHNMKN 518

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
             VP+ +       +TQ++   +E+ GL+K DFLGL+TLT++   + F+ +    +VD+  
Sbjct: 519  YVPLQQGSEGG-VITQYDKNKVEELGLLKMDFLGLRTLTVIGDCIRFIRETTGEEVDIDN 577

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV- 659
            IP  D  T  +L    T  +FQLES+G+ + +  + P+  ED+I LV+LYRPGP+   + 
Sbjct: 578  IPLADEATCAMLRRGETACVFQLESAGITKLVMDLAPESFEDLIPLVALYRPGPLGTGMA 637

Query: 660  -VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   ++G+     +HPL++P+LK+T GVI+YQEQVMQI   L+G++L +AD+LRRAMG
Sbjct: 638  EDFIAGRHGQRTAKVLHPLMEPILKDTYGVILYQEQVMQITSALAGFTLGQADILRRAMG 697

Query: 719  KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            KK  +E+D  ++ FI GA K + I + ++  IF LL  FA YGFNKSH+ AYA+++Y+TA
Sbjct: 698  KKKAKELDSMRQSFIDGAKKLHDIPEELSDQIFSLLQHFAGYGFNKSHSVAYALVAYETA 757

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIY 836
            ++K H+  +F AA +   + + +K+  +    R  N++I+PP VN    +F V  N  I 
Sbjct: 758  YLKAHWRPQFYAAFLNSIIGDADKVSWYINVCRNDNVKILPPDVNESGHNFTVHKNSSIR 817

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            + LA IK  G      I+ A     PF SL DFC RV+ + +N+RV+E+++  GA+D FG
Sbjct: 818  FGLAGIKNTGDAAVDAIISARNEGGPFKSLTDFCCRVNMRVVNKRVIENMIKCGAMDSFG 877

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R Q+L  ++         ++++ N    +F  +    + +I L         +  +NE
Sbjct: 878  ARRSQMLSIIEQAVDLGAACQRDKANGQLGLFGDDSFGVT-EIKLPPLPEIPKQLILQNE 936

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + ++GFY + HPL  YK +L++       +         G  +R+A ++     K T++G
Sbjct: 937  KEIIGFYVTDHPLSDYKQMLQRF--MPLHQFGGETQVQDGQFVRVAGIITDCTIKNTKRG 994

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
              +  +T  + +  +    FP
Sbjct: 995  DTMAVLTLEDFSGRFPVIVFP 1015


>gi|110633608|ref|YP_673816.1| DNA polymerase III subunit alpha [Mesorhizobium sp. BNC1]
 gi|110284592|gb|ABG62651.1| DNA polymerase III, alpha subunit [Chelativorans sp. BNC1]
          Length = 1172

 Score =  797 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 587/1030 (56%), Positives = 760/1030 (73%), Gaps = 10/1030 (0%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+VHS+YSLLEGAL L  I+     D+ PAIA  DTNNLF ALEF+QKA   GIQPI
Sbjct: 26   FIHLRVHSAYSLLEGALPLGKIIGHALKDEAPAIATADTNNLFGALEFAQKAVKDGIQPI 85

Query: 71   IGCQLDIDMQDNLKMTNQG--KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IGCQLD+   D      +   +  F     +VL+ +T  GY  L+ L+SR YL ++  + 
Sbjct: 86   IGCQLDVAFDDAFAEARRAASRKSFADYDPLVLIAATEAGYANLVRLMSRAYLDNEAGEP 145

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +   WLQE  +EG+I LTGG  GPI      + +++AE RLL  ++ +GDRLYV L+R
Sbjct: 146  PHVAADWLQE-HSEGIICLTGGPRGPIGAPLKADRAELAEARLLLLRETYGDRLYVELER 204

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +GYDR  E+  V LAY H+LPLVATN + F + +D++AHD L+A+A  +V++  DR R+
Sbjct: 205  LQGYDRNLEAAAVNLAYRHDLPLVATNEAFFPTRDDFDAHDALIAIAEGSVIASDDRRRL 264

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD---IQK 305
            TPD+YLK ++EM ++F+DLPEAL+NT+E+ARRCS+  +   PILPRF   E  D     +
Sbjct: 265  TPDNYLKTQAEMAALFADLPEALDNTLEVARRCSYYPKTRKPILPRFTGDEAGDEAAALQ 324

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E +ELR +A  GL+ RLA   IA+G+  ++Y  RL++EL VI RMKF GYFLIVADFI+
Sbjct: 325  AEADELRRQAREGLDKRLAIQGIAEGHSEEEYAARLEYELGVIERMKFPGYFLIVADFIK 384

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK ++IPVGPGRGSGAGS+ AYALTITDIDPLRFSLLFERFLNPDR+SMPDFDIDFCQD
Sbjct: 385  WAKAHDIPVGPGRGSGAGSLVAYALTITDIDPLRFSLLFERFLNPDRVSMPDFDIDFCQD 444

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVIRYVQ KYG ++V QIITFG+LQA+A LRDVGR LQMPY QVDRLCK++P++PA+
Sbjct: 445  RREEVIRYVQQKYGRDQVGQIITFGTLQARAVLRDVGRVLQMPYGQVDRLCKMVPSNPAN 504

Query: 486  PVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            P    +AI D+ RF E    +P V  LLEI+QKLEGLYRHASTHAAGIVIGDRPLS+LVP
Sbjct: 505  PTPLGKAIEDEPRFAEEVEKEPIVGTLLEIAQKLEGLYRHASTHAAGIVIGDRPLSELVP 564

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            MYRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+L+K++  + +RG+++DLS IP D
Sbjct: 565  MYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLEKAVHLIRRRGIEIDLSKIPLD 624

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY +L+   T+G+FQ+ES+GMR+AL GM+PD +EDIIALV+LYRPGP++NI  YN R
Sbjct: 625  DKKTYEMLSRGETVGVFQVESAGMRKALIGMKPDRVEDIIALVALYRPGPMENIPTYNAR 684

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+E++ SIHP ID ++KETQGVI+YQEQVMQIAQ L+GY+L EAD+LRRAMGKKI+ E
Sbjct: 685  KHGEEEMASIHPKIDHLVKETQGVIVYQEQVMQIAQELAGYTLGEADLLRRAMGKKIRAE 744

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MDKQ+ RF+ GA + G++K  A  IF+LLAKFADYGFNKSHAAAYAV+SYQTA++K HYP
Sbjct: 745  MDKQRVRFVEGAVERGVTKQQADFIFDLLAKFADYGFNKSHAAAYAVVSYQTAYLKAHYP 804

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAASMT +M N +K+  F +DA +  I+++PPSV T   DF+VG+NRI+YSLAAIKG
Sbjct: 805  VEFLAASMTYDMANTDKLNDFRRDAIRLGIEVVPPSVLTSYRDFEVGENRIFYSLAAIKG 864

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
             G     HI+    +KPF+S+EDFC+RVD K + +RVLESL+ AGA DCFG  R  L   
Sbjct: 865  AGDAAVEHIVAKRKEKPFESIEDFCARVDPKIVGKRVLESLICAGAFDCFGLDRAALFAG 924

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +D +   A    ++      +IF         K+ L   +   ++ +   E +V+G Y S
Sbjct: 925  VDRLMGMASRAAEDAAIGQADIFG-SAAIEPQKLQLPATAPWLAAEKLHREFQVVGCYLS 983

Query: 965  GHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             HPLD Y P L K+ ++ + +   A  RG    RLA  V +KQ++KTR G+++G V FS+
Sbjct: 984  AHPLDDYLPTLEKLRVQSWADFQAAVKRGATAGRLAGTVTAKQERKTRTGNKMGIVQFSD 1043

Query: 1023 PAKEYEANFF 1032
               +YEA  F
Sbjct: 1044 ATGQYEAVLF 1053


>gi|145598935|ref|YP_001163011.1| DNA polymerase III subunit alpha [Yersinia pestis Pestoides F]
 gi|145210631|gb|ABP40038.1| DNA polymerase III, alpha subunit [Yersinia pestis Pestoides F]
          Length = 1171

 Score =  797 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1049 (39%), Positives = 602/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  
Sbjct: 12   MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHG 70

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    
Sbjct: 71   AGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY 120

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL +   EGLI+L+GG  G + +     +    ++ L  +++ F D  Y+
Sbjct: 121  GAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYL 179

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  F+ E D++AH++ +A+     +   
Sbjct: 180  ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 239

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 240  KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 294

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGY---HAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L  KA  GLE RL     A         +Y +RLD EL VI +M F GYFLI
Sbjct: 295  GEMSTEDFLVEKAKQGLEERLEFLFPAPEVRLQKRPEYDERLDIELKVINQMGFPGYFLI 354

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD
Sbjct: 355  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFD 414

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 415  VDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 474

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 475  PLDPGMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 533

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R       
Sbjct: 534  TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 593

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 594  PIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 653

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL
Sbjct: 654  LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 713

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 714  GGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSA 773

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    
Sbjct: 774  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 833

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA  +   F  L D C+RVD+KKLN+R+LE L
Sbjct: 834  FHVNDDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKL 893

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F          + +     
Sbjct: 894  IMSGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVP 953

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +V++
Sbjct: 954  PWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIA 1013

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1014 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|22126996|ref|NP_670419.1| DNA polymerase III subunit alpha [Yersinia pestis KIM 10]
 gi|45442559|ref|NP_994098.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Microtus
            str. 91001]
 gi|108806532|ref|YP_650448.1| DNA polymerase III subunit alpha [Yersinia pestis Antiqua]
 gi|108813101|ref|YP_648868.1| DNA polymerase III subunit alpha [Yersinia pestis Nepal516]
 gi|149366940|ref|ZP_01888973.1| DNA polymerase III, alpha chain [Yersinia pestis CA88-4125]
 gi|162420959|ref|YP_001607757.1| DNA polymerase III subunit alpha [Yersinia pestis Angola]
 gi|165927052|ref|ZP_02222884.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis
            str. F1991016]
 gi|165939826|ref|ZP_02228366.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis
            str. IP275]
 gi|166011915|ref|ZP_02232813.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
            str. E1979001]
 gi|166211235|ref|ZP_02237270.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
            str. B42003004]
 gi|167400078|ref|ZP_02305596.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
            str. UG05-0454]
 gi|167419915|ref|ZP_02311668.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis
            str. MG05-1020]
 gi|167425342|ref|ZP_02317095.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Mediaevalis
            str. K1973002]
 gi|218928227|ref|YP_002346102.1| DNA polymerase III subunit alpha [Yersinia pestis CO92]
 gi|270487325|ref|ZP_06204399.1| DNA polymerase III subunit alpha [Yersinia pestis KIM D27]
 gi|294503076|ref|YP_003567138.1| DNA polymerase III subunit alpha [Yersinia pestis Z176003]
 gi|21960041|gb|AAM86670.1|AE013912_14 DNA polymerase III, alpha subunit [Yersinia pestis KIM 10]
 gi|45437424|gb|AAS62975.1| DNA polymerase III, alpha chain [Yersinia pestis biovar Microtus str.
            91001]
 gi|108776749|gb|ABG19268.1| DNA polymerase III, alpha subunit [Yersinia pestis Nepal516]
 gi|108778445|gb|ABG12503.1| DNA polymerase III, alpha subunit [Yersinia pestis Antiqua]
 gi|115346838|emb|CAL19724.1| DNA polymerase III, alpha chain [Yersinia pestis CO92]
 gi|149290554|gb|EDM40630.1| DNA polymerase III, alpha chain [Yersinia pestis CA88-4125]
 gi|162353774|gb|ABX87722.1| DNA polymerase III, alpha subunit [Yersinia pestis Angola]
 gi|165912229|gb|EDR30866.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis
            str. IP275]
 gi|165920948|gb|EDR38172.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis
            str. F1991016]
 gi|165989181|gb|EDR41482.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
            str. E1979001]
 gi|166207006|gb|EDR51486.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
            str. B42003004]
 gi|166962656|gb|EDR58677.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Orientalis
            str. MG05-1020]
 gi|167050786|gb|EDR62194.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
            str. UG05-0454]
 gi|167055742|gb|EDR65526.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Mediaevalis
            str. K1973002]
 gi|262361114|gb|ACY57835.1| DNA polymerase III subunit alpha [Yersinia pestis D106004]
 gi|262365354|gb|ACY61911.1| DNA polymerase III subunit alpha [Yersinia pestis D182038]
 gi|270335829|gb|EFA46606.1| DNA polymerase III subunit alpha [Yersinia pestis KIM D27]
 gi|294353535|gb|ADE63876.1| DNA polymerase III subunit alpha [Yersinia pestis Z176003]
          Length = 1171

 Score =  797 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1049 (39%), Positives = 601/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  
Sbjct: 12   MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHG 70

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    
Sbjct: 71   AGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY 120

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL +   EGLI+L+GG  G + +     +    ++ L  +++ F D  Y+
Sbjct: 121  GAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYL 179

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  F+ E D++AH++ +A+     +   
Sbjct: 180  ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 239

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 240  KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 294

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGY---HAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L  KA  GLE RL               +Y +RLD EL VI +M F GYFLI
Sbjct: 295  GEMSTEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLI 354

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD
Sbjct: 355  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFD 414

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 415  VDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 474

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 475  PLDPGMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 533

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R       
Sbjct: 534  TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 593

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 594  PIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 653

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL
Sbjct: 654  LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 713

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 714  GGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSA 773

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    
Sbjct: 774  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 833

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA  +   F  L D C+RVD+KKLN+R+LE L
Sbjct: 834  FHVNDDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKL 893

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F          + +     
Sbjct: 894  IMSGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVP 953

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +V++
Sbjct: 954  PWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIA 1013

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1014 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|153956157|ref|YP_001396922.1| DNA polymerase III DnaE [Clostridium kluyveri DSM 555]
 gi|219856482|ref|YP_002473604.1| hypothetical protein CKR_3139 [Clostridium kluyveri NBRC 12016]
 gi|146349015|gb|EDK35551.1| DnaE [Clostridium kluyveri DSM 555]
 gi|219570206|dbj|BAH08190.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1158

 Score =  797 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1050 (35%), Positives = 590/1050 (56%), Gaps = 49/1050 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L  H+ YSLL+ +  ++ ++ +    +  +IAITD  +++  +EF ++A A GI+PII
Sbjct: 9    VSLHQHTEYSLLDSSAKISELIARAKELEMDSIAITDHGSMYGCVEFYKEAKAQGIKPII 68

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC++ +  +      N G+        +VLLV   EGY+ L+++VS   + +      R+
Sbjct: 69   GCEIYVSQKSMYVKQNNGEN---GNYHLVLLVKNKEGYKNLMKIVSTASI-EGFYYKPRV 124

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +L+E  +EGLI L+   SG +      ++ + A++  L ++K+F +  Y+ LQ H  
Sbjct: 125  DHDYLRE-HSEGLIALSACMSGEVQANILKDNIKTAKEIALFYQKIFKEGFYLELQYHGI 183

Query: 192  YDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-T 249
             ++     +++ ++    +PLVATN+  ++ +EDY +HDVL+ +     V ++ R R  +
Sbjct: 184  EEQLKINQELISMSKELNIPLVATNDVHYIRKEDYRSHDVLLCIQTGKTVDEEQRMRYPS 243

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + YLK+  +M  +FS +PEALENTV+IA +CSF  + H   LP+F  KE  D       
Sbjct: 244  DEFYLKSPEQMYEMFSHVPEALENTVKIADQCSFDYEFHNSKLPKFPLKEGIDPY----E 299

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             ++     GL+ R             +   RL++EL++I +M +  YFLIV DFI +A +
Sbjct: 300  YMKELCYKGLKKRYKN-------IDDNLINRLEYELDIIKKMGYVDYFLIVWDFISFAVQ 352

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I  GPGRGSGAGS+ AY L IT +DP++++L+FERFLNP+R+SMPD D DFC +RR E
Sbjct: 353  NGIMTGPGRGSGAGSIVAYTLGITKVDPIKYNLIFERFLNPERISMPDIDSDFCYERRGE 412

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI YV  KYG   V+QI+TFG++ A+A +RDVGRA+  PY +VDR+ K+IP      +  
Sbjct: 413  VIDYVVGKYGKNNVSQIVTFGTMAARACIRDVGRAMNYPYGEVDRIAKMIPTILNITID- 471

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +A+  +   + A   +     L+++++ LEGL RH STHAAG+VI  +PL   VP+ ++ 
Sbjct: 472  KALEINPELKGAYEEELRTKELIDVARALEGLPRHTSTHAAGVVIASKPLVNYVPLQKN- 530

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
                 VTQF M  +E+ GL+K DFLGL+TLT+L+ +L  + +     +DL  I +DD   
Sbjct: 531  -EGNIVTQFTMNTLEELGLLKMDFLGLRTLTVLRDALTMIKENKGKSIDLDNIDYDDKAV 589

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            Y ++    T+G+FQLES GM   ++ ++PD +EDIIA +SLYRPGPI  I  Y   KN  
Sbjct: 590  YDMIGQGKTVGVFQLESPGMTSFMKELKPDSLEDIIAGISLYRPGPIAEIPKYIKNKNSV 649

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             +I  + P ++ +L  T G ++YQEQVMQI + L+GYS+  +D++RRAM KK    M+++
Sbjct: 650  HEINYVTPQLEHILSVTYGCMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHHVMEEE 709

Query: 729  KERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            +  FI             G  +NGIS+  A +IF+ +  FA Y FNKSHAAAYAV+++QT
Sbjct: 710  RRNFIYGIVDENGKVEVPGCIRNGISEKAANDIFDSMIDFASYAFNKSHAAAYAVVAFQT 769

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++  +YP EF AA +     + EK+  + + A+   I+++PPS+N     F V D RI 
Sbjct: 770  AYLMHYYPTEFTAAMLNSVKGDSEKVAYYIRFAKGIGIEVLPPSINESYAKFTVEDGRIR 829

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            + L+A+K VG      I+++      F  L DFCS ++ + +N+RV+ESL+ AGA DCFG
Sbjct: 830  FGLSAVKNVGENIIDSIVKSRLKHGKFKDLVDFCSNIEIQSINKRVVESLIKAGAFDCFG 889

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R QL    + I        K       ++F+  + + S +I                E
Sbjct: 890  KYRSQLSLVYEKIIDSVINSRKKNIKGQISLFSQIEDS-SIEIQYPSIKEFMKRDMLSME 948

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-------------ATIRGNNIRLAAMVV 1002
            + + G Y SGHPLD Y+  L+        + +                 G+ + +  ++ 
Sbjct: 949  KEMTGLYLSGHPLDEYEKTLKLQTDTKISDIITRETLEESFIEESRVRDGDKVIIGGILS 1008

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +K T+    + +    +     E   F
Sbjct: 1009 QVSRKITKNNDMMAFARLEDLYGIMEIIIF 1038


>gi|13471011|ref|NP_102580.1| DNA polymerase III subunit alpha [Mesorhizobium loti MAFF303099]
 gi|14021755|dbj|BAB48366.1| DNA polymerase III alpha subunit [Mesorhizobium loti MAFF303099]
          Length = 1175

 Score =  797 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 595/1029 (57%), Positives = 756/1029 (73%), Gaps = 8/1029 (0%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS+YSLLEGAL L  I+     D+ PAIA+TDTNNLF ALEF+QKA   GIQPI
Sbjct: 29   FVHLRVHSAYSLLEGALQLGKIVGHAVKDEAPAIAVTDTNNLFGALEFAQKAVKDGIQPI 88

Query: 71   IGCQLDIDM-QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IGCQ+ +    +N       +   P +  +VLL +T  GY  L+ LVSR+YL     ++V
Sbjct: 89   IGCQIALAFSGENSDGQRDRRRQGPEMRPVVLLAATEAGYSNLVRLVSRVYLETPPGEAV 148

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L E   +GLI L+GG  GPI  A   +   +AE RLLT K LFGDRLYV L R 
Sbjct: 149  HLTTEML-EGKADGLICLSGGPRGPIGNALKEDRRDLAEVRLLTLKTLFGDRLYVELDRV 207

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             GYDR  E Q + LAY HELPLVATN + F S +DYEAHD L+A+A  +VV+   R R++
Sbjct: 208  AGYDRVIEHQTIDLAYAHELPLVATNEAFFSSRDDYEAHDALIAIAEGSVVAVDTRRRLS 267

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---IEKECDDIQKE 306
            PD++L++++EM  +F+DLPEA++NTVEIA RCS+  +  +PILPRF      + D  +K 
Sbjct: 268  PDNFLRSQAEMAQLFADLPEAIDNTVEIALRCSYYPKTRSPILPRFTGGDASDKDAAEKA 327

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E  EL  +A  GL+ RLA      GY  + YR+RL+FEL +I +MKF GYFLIVADFI+W
Sbjct: 328  EAAELARQAREGLDARLALHGPTPGYTVEQYRERLEFELGIIEKMKFPGYFLIVADFIKW 387

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IPVGPGRGSGAGS+ AY+ TITDIDPLRFSLLFERFLNPDR+SMPDFDIDFCQDR
Sbjct: 388  AKAQGIPVGPGRGSGAGSLVAYSTTITDIDPLRFSLLFERFLNPDRVSMPDFDIDFCQDR 447

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVIRYVQ KYG ++V QIITFG+LQA+A LRDVGR LQMPY QVD+L K++P +PA+P
Sbjct: 448  REEVIRYVQQKYGRDQVGQIITFGTLQARAVLRDVGRVLQMPYGQVDKLSKMVPQNPANP 507

Query: 487  VS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V    AIA++ RF E    +P V  LL+++QKLEGLYRHASTHAAGIVIGDRPLS+LVPM
Sbjct: 508  VKLADAIANEPRFAEEAEKEPIVQTLLDMAQKLEGLYRHASTHAAGIVIGDRPLSELVPM 567

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            YRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++  + +RG+ +DL+ IP DD
Sbjct: 568  YRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLETAVKLIRRRGIDIDLATIPLDD 627

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             ETY +L+    +G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN RK
Sbjct: 628  PETYAMLSRGEVVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPTYNARK 687

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+E++ SIHP ID ++KETQGVI+YQEQVMQIAQ LSGYSL EAD+LRRAMGKKI+ EM
Sbjct: 688  HGEEEMASIHPKIDHLVKETQGVIVYQEQVMQIAQELSGYSLGEADLLRRAMGKKIRAEM 747

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            DKQ+ERF+SGA + G+SK  A  IF+LLAKFADYGFNKSHAAAYAV+SYQTA++K HYPV
Sbjct: 748  DKQRERFVSGAVERGVSKPQADFIFDLLAKFADYGFNKSHAAAYAVVSYQTAYLKAHYPV 807

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EFLAASMTL+M N +K+  F QDA +  I+++ PSV T    F+VG+NRIYYS+AA+KGV
Sbjct: 808  EFLAASMTLDMGNTDKLADFRQDALRLGIEVLAPSVMTSFRPFEVGENRIYYSMAALKGV 867

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G     HI+    +KPF +L DFC RVD K + +RV ESL+ AGALDCFG+ R Q++  +
Sbjct: 868  GDAAVEHIVAVRGEKPFKNLADFCERVDPKIVGKRVFESLIMAGALDCFGHDRAQMMAGV 927

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            + +   A   ++N  +   +IF    G  S  + L       ++ R   E +V+GFY S 
Sbjct: 928  ERMMGLASLAQQNAVSGQADIFGASLGAQSQALNLPATDPWLAADRLHREFQVVGFYLSA 987

Query: 966  HPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            HPLD YK  L+KM ++ + E   A  RG +  RLA  V SKQ++KTR G+++G V FS+ 
Sbjct: 988  HPLDEYKAALQKMRVQNWAEFSAAVKRGASAGRLAGTVTSKQERKTRTGNKMGVVAFSDT 1047

Query: 1024 AKEYEANFF 1032
            + +YEA  F
Sbjct: 1048 SGQYEAVLF 1056


>gi|227326551|ref|ZP_03830575.1| DNA polymerase III subunit alpha [Pectobacterium carotovorum subsp.
            carotovorum WPP14]
          Length = 1160

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1049 (39%), Positives = 600/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G   +  ++ K AA   PA+AITD  NL   ++F   A  
Sbjct: 1    MAE-PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    ++  +              +  + +L     GYQ L  L+S  Y    
Sbjct: 60   AGIKPIIGADFCVESDE----------LGDELAHLTVLAMNNAGYQNLTLLISHAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E   EGLI+L+GG  G + R     +   AE+ L  +++ F  R Y+
Sbjct: 110  GAAGPTIDRDWLIE-HQEGLILLSGGRRGDVGRFLLRGNQAQAEQCLAFYQEHFPQRYYL 168

Query: 185  NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R  R  +       V+LA  H +P+VATN   F+S +D++AH++ +A+     +   
Sbjct: 169  ELIRTSRPDEESYLHAAVELATKHGIPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L   +  GLE RL         +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMSTEDFLVQCSKKGLEERLEFLFPDPEVRAERRPEYDERLDIELGVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDKVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K  L 
Sbjct: 523  TDFAPLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKQGLE 582

Query: 600  L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                  IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA   G++  +AV IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKNPVEMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L D C+R D KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F          + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLPDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYSTVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPITQYIKEIERYAGGVRLKDMHPTDRGKMTTAVGLVLA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGVCTLDDRSGRLEIMLF 1031


>gi|291542868|emb|CBL15978.1| DNA polymerase III catalytic subunit, DnaE type [Ruminococcus bromii
            L2-63]
          Length = 1174

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/1045 (34%), Positives = 568/1045 (54%), Gaps = 40/1045 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL +H+ YSLL+GA  L+ +          A+AITD   ++ A++F ++    GI+P
Sbjct: 2    AFTHLHLHTEYSLLDGACRLSRLAKAAKEKGMTALAITDHGVMYGAVDFYKECKKQGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  Q     T    + +     +VLL     GYQ LI+LVS+ +  +      
Sbjct: 62   IIGCEVYVAPQSRFDKT----SSYGKYYHMVLLCKNHTGYQNLIKLVSKGFT-EGFYTKP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            RI    L E   EGL+ L+   +G I +         A+ +   ++ +FG +  ++ LQ 
Sbjct: 117  RIDDELLAEYH-EGLVCLSACLAGEIPQKLLDGDYAGAKSKAEFYRDIFGSENFFIELQD 175

Query: 189  HRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ R    ++++A    + +VATN+  ++ ++D   H++L+ +  +  V+  DR  
Sbjct: 176  HGIEEQKRIIPSLIKIAREIGVDIVATNDCHYIEKQDSTVHNILLCIQTNRTVNDSDRME 235

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + YLK   EM  +F+  PEA++NT +IA  C+   +     LPRF     +D    
Sbjct: 236  FKTSEFYLKTEDEMREVFASYPEAIDNTQKIADMCNVDFEFGVRKLPRFDVPNNEDHLH- 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                 R K   GL     +          +Y      E+N +++M F  Y+LIV DF+ +
Sbjct: 295  ---YFRRKCYEGLYKHYGENPDQSLIDRLEY------EINTVSQMGFVDYYLIVNDFVSY 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IPVGPGRGSGAGS+ AY + IT IDP++++LLFERFLNP+R+SMPDFD+DFC++R
Sbjct: 346  AKSCQIPVGPGRGSGAGSLCAYCIGITAIDPIKYNLLFERFLNPERVSMPDFDVDFCKER 405

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG + VAQII+FG++ A+ A+RDVGR L++PY+ VD + KL+P +    
Sbjct: 406  RGEVIDYVVRKYGEDHVAQIISFGTMAARGAIRDVGRVLEIPYATVDSVAKLVPMEHDMT 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +    +      R     DP + +LL+++  +EG+ RHA+ HAAG+VI D+P+S  VP+ 
Sbjct: 466  IEEA-LKLSPNLRSRCNNDPQIKKLLDVAMSIEGMPRHATMHAAGVVITDKPVSDYVPLS 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            ++   D  VTQF M  +E+ GL+K DFLGL+ LT++  +   +  +    +  ++  +D 
Sbjct: 525  KN--DDNVVTQFTMTALEELGLLKMDFLGLRNLTVINDAEKQIKHKNPDYNPDMVDENDK 582

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + + + +   T G+FQ ES GM+  L  ++P+ IED+IA+ +LYRPGP+D+I VY + ++
Sbjct: 583  KVFEMFSKGYTEGVFQFESQGMKNVLTQLKPERIEDLIAVTALYRPGPMDSIPVYIDCRH 642

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                I   HPL+  +L  T G IIYQEQVMQI + L+GYSL  AD++RRAM KK    M+
Sbjct: 643  NPSHIRYKHPLLKEILGVTSGCIIYQEQVMQIFRTLAGYSLGRADIVRRAMSKKKLAVME 702

Query: 727  KQKERFISG------------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
             ++E FI G              + G+ +  A+++++ +  FA Y FNKSHAAAYA ISY
Sbjct: 703  SEREIFIHGLTDDDGNIIVEGCIRRGVDEKTAISVYDEMESFAHYAFNKSHAAAYANISY 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            +TAW+K HYP E++AA ++  +DN  K+  +  + ++  I+++PP+VN   + F V  N 
Sbjct: 763  KTAWLKCHYPREYMAALLSSVLDNQNKLASYITECKRLGIRVLPPNVNESNLHFTVSGND 822

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I Y L A+K +G      I+    + P++   DFC R+  + +N R +ESL+  GA D  
Sbjct: 823  IRYGLLAVKNLGRNFIDEIISERINNPYEDFFDFCKRLYGRNMNSRAIESLIKCGAFDGL 882

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-GTFSDKITLEKFSVENSSVRFE 953
            G +R QLL     +    ++  +       + F   +    S K  +        S    
Sbjct: 883  GANRRQLLAISKTVLDDVEYESRRNAGGQMSFFDDAEVDAQSSKPKIPDLPEFPVSELLH 942

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-----RGNNIRLAAMVVSKQQKK 1008
             E  + G Y SGHPLD Y    + +      + +         G  + L  +V   + + 
Sbjct: 943  MENEIAGMYLSGHPLDEYTTFSKAIHSDKTGDIINNDSGMYFDGKKVNLVCIVAKLKTQL 1002

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            T+    + +V   +     E   FP
Sbjct: 1003 TKNNRIMAFVNAEDRYGMLEIVIFP 1027


>gi|261211363|ref|ZP_05925651.1| DNA polymerase III alpha subunit [Vibrio sp. RC341]
 gi|260839318|gb|EEX65944.1| DNA polymerase III alpha subunit [Vibrio sp. RC341]
          Length = 1159

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1048 (40%), Positives = 616/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VHS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFIHLRVHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG    +          Q +     +  + LL     GY+ L  L+S+ YL   
Sbjct: 60   CGIKPIIGADFML----------QSEEFGDELTKLTLLAKNNIGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  +WL +   EGLI+L+GG SG + RA    + Q  EK L  ++  F D  Y+
Sbjct: 110  VQHQPVLDKAWLID-HAEGLIVLSGGKSGEVGRALLKGNQQQVEKCLEFYQTHFADHFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        + +A  +ELP+VATN  +F++EE +EAH++ +A+     +   
Sbjct: 169  ELIRTGRADEESYLHFALDVAEQYELPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL+  +EM  +F+D+PEALEN+VEIA+RC+  +++       +       
Sbjct: 229  RRPKNYSPKQYLRTEAEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPNFPT 283

Query: 303  IQKEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE     L      +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 284  EGMAIEDFLVMKSREGLEDRLEFLFPDPEVRAQRRPEYDERLQIELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +    IA +   +E   AD  V  L++  + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRAVFQEGAENNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V DN  I Y + AIKGVG      I+EA   D  F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKDGYFKDLFDFCARIDLKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + AGALD  G  R  ++ S+D+  + A    +       ++F        + +    +  
Sbjct: 883  ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ 
Sbjct: 943  EWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   +
Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|153213783|ref|ZP_01948991.1| DNA polymerase III, alpha subunit [Vibrio cholerae 1587]
 gi|124115707|gb|EAY34527.1| DNA polymerase III, alpha subunit [Vibrio cholerae 1587]
          Length = 1164

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1048 (40%), Positives = 616/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A  
Sbjct: 6    MSD-PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 64

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG    +          Q +     +  + LL     GY+ L  L+S+ YL   
Sbjct: 65   CGVKPIIGADFTL----------QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGH 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+
Sbjct: 115  VQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYL 173

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        + +A  ++LP+VATN  +F++EE +EAH++ +A+     +   
Sbjct: 174  ELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 233

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++       +       
Sbjct: 234  RRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPT 288

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 289  GGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLI 348

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 349  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 408

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 409  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 468

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +    IA +   +E   AD  V  L++  + LEG  R+A  HA G+VI    +
Sbjct: 469  PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 527

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 528  TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 587

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 588  PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 647

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 648  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 707

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 708  GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 767

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    
Sbjct: 768  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 827

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V DN  I Y + AIKGVG      I+EA      F  L D C+R+D KK+N+RV+E L
Sbjct: 828  FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDLCARIDLKKVNKRVIEKL 887

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + AGALD  G  R  ++ S+D+  + A    +       ++F        D +    +  
Sbjct: 888  ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEDVEQKYTQVP 947

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ 
Sbjct: 948  EWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1007

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   +
Sbjct: 1008 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1035


>gi|28212073|ref|NP_783017.1| DNA polymerase III DnaE [Clostridium tetani E88]
 gi|28204516|gb|AAO36954.1| DNA polymerase III, alpha chain [Clostridium tetani E88]
          Length = 1166

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1051 (35%), Positives = 589/1051 (56%), Gaps = 50/1051 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H+ YSLL+ +  +  ++ K+      +IAITD   ++  +EF ++A   GI+PIIGC
Sbjct: 14   LHQHTEYSLLDSSAKITELIKKVKELGMKSIAITDHGVMYGCVEFYKEAIKEGIKPIIGC 73

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++ +  +               +  +VLLV    GY+ L+E+VS+  + D      R+  
Sbjct: 74   EIYVVPKSMHIKRVDNDN---AIYHLVLLVKNDVGYRNLMEIVSKASI-DGFYYKPRVDH 129

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
             +L+E  +EGLI  +    G +       + + AEK  L +K++F +  Y+ LQ H   +
Sbjct: 130  EFLRE-HSEGLIASSACLGGEVQSYILKGNIEKAEKAALNYKEIFKEGFYLELQDHGMKE 188

Query: 194  R-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPD 251
            +    ++++ ++    +PLVATN+  ++ +ED  AHD+L+ V     V +++R R  T +
Sbjct: 189  QVKVNNELIAMSKRLSIPLVATNDVHYIEKEDSRAHDILLCVQTGKTVEEENRMRYPTGE 248

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             YLK+  EM ++FS +PEALENT++IA +C+F    H   LP F   +  D      + L
Sbjct: 249  FYLKSPEEMYNLFSHVPEALENTIKIAEQCNFQYNFHESKLPTFPLPDKVDNY----DYL 304

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R     GL+              +  + RL++ELNVI  M +  YFLIV DFI++AK+ +
Sbjct: 305  RELCYEGLKE-------KYDTVDEKLKNRLEYELNVIKEMGYVDYFLIVWDFIRFAKEKD 357

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I  GPGRGSGAGS+ AY L IT IDP+++ L+FERFLNP+R+SMPD D DFC +RR EVI
Sbjct: 358  IMTGPGRGSGAGSIVAYTLGITKIDPIKYGLIFERFLNPERISMPDIDSDFCYERRQEVI 417

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             YV  KYG   V+QI TFG++ A+A +RDVGRA+   Y +VD++ K+IP  P   +++  
Sbjct: 418  DYVVEKYGENNVSQIATFGTMAARACIRDVGRAMNYSYVEVDKIAKMIPTVPGTSITIDK 477

Query: 492  -IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
             +  +   +     D  ++ L+ I+ KLEGL RH STHAAG+VI   PL   VP+ ++  
Sbjct: 478  ALQLNPELKAIYENDHRINDLINIAIKLEGLPRHTSTHAAGVVIASHPLVNYVPLQKN-- 535

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
                VTQF M  +E+ GL+K DFLGL+TLT+++ ++  + + RG+ +DL  + FDD E Y
Sbjct: 536  EGNIVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVAMIKENRGIDIDLDKLDFDDKEVY 595

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
            +++    T+G+FQLES GM   +  ++PD +EDIIA +SLYRPGP+  I  Y + K   E
Sbjct: 596  NMIGEGKTVGVFQLESDGMTSFMRELKPDSLEDIIAGISLYRPGPMAEIPKYISNKKNPE 655

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  + P ++ +L  T G ++YQEQVM++ + L+GYS+  +D++RRAM KK  + M++++
Sbjct: 656  KIEYLTPRLEDILSVTYGCMVYQEQVMEVVRKLAGYSMGRSDLVRRAMSKKKHDVMEEER 715

Query: 730  ERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            + F+             G  +NGI + I   IF+ +  FA Y FNKSHAAAYAV+++QT 
Sbjct: 716  KNFVYGIIDESGNIEVPGCVRNGIDEKIGNKIFDSMLDFASYAFNKSHAAAYAVVAFQTG 775

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++  +YP E +AA +   M N EK+  + + A++  ++++PP+VN     F V  NRI +
Sbjct: 776  YLMRYYPTECIAAMLNSVMGNSEKVAYYTRYAKEEGMEVLPPNVNESYGKFTVKGNRIRF 835

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LAAIK VG     +I+EA      F +LEDFCS+VD   +N+R +ESL+ AGA D F  
Sbjct: 836  GLAAIKNVGLNAIENIVEARGKKGTFANLEDFCSKVDLSCINKRAMESLIKAGAFDNFQI 895

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R ++L   + +       ++       N+F  E    S +I     +  +       E+
Sbjct: 896  FRSRMLAVHEKVLDSINNDKRKNIQGQVNLF-EELEESSLEIQYPNINEFDKKNILSMEK 954

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------------TIRGNNIRLAAMVV 1002
             + G Y SGHPLD YK   +        + V+                 G  + +  ++ 
Sbjct: 955  EMTGLYLSGHPLDEYKNDFKNKVSINISDIVSDKGLEGDLIEGERKVKDGEKVIIGGIIT 1014

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  +K TR    + ++   +     E   FP
Sbjct: 1015 NVNKKATRSNEMMAFIEVEDLYGTIEVIIFP 1045


>gi|51597303|ref|YP_071494.1| DNA polymerase III subunit alpha [Yersinia pseudotuberculosis IP
            32953]
 gi|186896408|ref|YP_001873520.1| DNA polymerase III subunit alpha [Yersinia pseudotuberculosis PB1/+]
 gi|51590585|emb|CAH22226.1| DNA polymerase III, alpha chain [Yersinia pseudotuberculosis IP
            32953]
 gi|186699434|gb|ACC90063.1| DNA polymerase III, alpha subunit [Yersinia pseudotuberculosis PB1/+]
          Length = 1171

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1049 (39%), Positives = 601/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  
Sbjct: 12   MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHG 70

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    
Sbjct: 71   AGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY 120

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL +   EGLI+L+GG  G + +     +    ++ L  +++ F D  Y+
Sbjct: 121  GAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYL 179

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  F+ E D++AH++ +A+     +   
Sbjct: 180  ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 239

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 240  KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 294

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGY---HAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L  KA  GLE RL               +Y +RLD EL VI +M F GYFLI
Sbjct: 295  GEMSTEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLI 354

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD
Sbjct: 355  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFD 414

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 415  VDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 474

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 475  PLDPGMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 533

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R       
Sbjct: 534  TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 593

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 594  PIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 653

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL
Sbjct: 654  LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 713

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 714  GGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSA 773

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    
Sbjct: 774  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 833

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA  +   F  L D C+RVD+KKLN+R+LE L
Sbjct: 834  FHVNDDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKL 893

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F          + +     
Sbjct: 894  IMSGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVP 953

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +V++
Sbjct: 954  PWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIA 1013

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1014 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|118443745|ref|YP_877379.1| DNA polymerase III DnaE [Clostridium novyi NT]
 gi|118134201|gb|ABK61245.1| DNA polimerase III, alpha chain [Clostridium novyi NT]
          Length = 1167

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1062 (35%), Positives = 601/1062 (56%), Gaps = 58/1062 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YSLL+G+  +  ++++       ++AITD   +F  ++F +KA  AGI+PI
Sbjct: 6    FVHLHTHTEYSLLDGSGKIGGLIERAKELGMDSLAITDHGTMFGCVDFYKKAKEAGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG ++ +  +      N           +VLLV    GY+ L+++VS+  + D      R
Sbjct: 66   IGSEIYVASKSMNIKRN---DRENKNHHLVLLVKNEIGYKNLMKIVSKAAI-DGFYYKPR 121

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   +L+E  +EGLI L+   +G +       + + A +  L +K +F D  Y+ LQ H 
Sbjct: 122  VDHEYLRE-HSEGLIALSACLAGEVSYNLLNGTKEKAREVALFYKDIFKDGFYLELQYHG 180

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               + R    +++L+   ++PLVATN+  ++ +ED ++HDVL+ +     +   DR R  
Sbjct: 181  IDKQLRVNEMLIELSRELDIPLVATNDVHYIKKEDAKSHDVLLCIQTGKTLDDTDRMRYE 240

Query: 250  PDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P ++  K+  EM   FS +PEALENTV+IA  C+F    H   LP F   E     K+  
Sbjct: 241  PQNFYLKSPEEMYDTFSYVPEALENTVKIAEECNFDYVFHESKLPNFPLPE----SKDHF 296

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              ++     GL+VR  +          + ++RL++EL VI +M +  YFLIV DF +++ 
Sbjct: 297  EYMKELCYKGLKVRYPE-------ITPELKERLEYELGVIKQMGYVDYFLIVWDFFRFSH 349

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ AY L IT IDP++++L+FERFLNP+R+SMPD D DFC +RR 
Sbjct: 350  EKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNPERVSMPDIDSDFCYERRG 409

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV  KYG + V+QI+TFG++  +A +RDVGRA+   Y++VDR+ K+IP      + 
Sbjct: 410  EVIDYVVEKYGKDNVSQIVTFGTMAPRACIRDVGRAMNYSYAEVDRIAKMIPTVLGITID 469

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+  +   +EA   D  V  L+++++ LEGL RH STHAAG+VI  +PL   VP+ ++
Sbjct: 470  -KALEMNPELKEAYDIDSRVKELIDVARDLEGLPRHTSTHAAGVVIASQPLVNYVPLSKN 528

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
               +  VTQF M  +E+ GL+K DFLGL+TLT+++ ++D + ++   ++DL  I F+D  
Sbjct: 529  --EEAIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDAIDLVKKKTGTEIDLDKINFEDEN 586

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
             Y +L    T+G+FQLES+GM   ++ ++P+ +EDIIA +SLYRPGP+  I  Y   KN 
Sbjct: 587  VYAMLGKGKTVGVFQLESAGMTNFMKELKPESLEDIIAGISLYRPGPMAEIPKYIKNKNN 646

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             + I  + P ++P+L  T GV++YQEQVMQI + L+GYS+  +D++RRAM KK  + M++
Sbjct: 647  PKDIEYLTPKLEPILNVTYGVMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHKVMEE 706

Query: 728  QKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            +++ FI             G  +NGIS+ +A  I++ +  FA Y FNKSHAAAYAV++Y 
Sbjct: 707  ERKNFIYGIEDEKGNVIVPGCLRNGISEEVANKIYDQMMDFASYAFNKSHAAAYAVVAYY 766

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++  +YP EF+AA +     N +K+  + + A+Q  I+++PP +N     F V + +I
Sbjct: 767  TAYLVYYYPTEFMAAILNSVRGNSDKVAAYIRAAKQMEIEVLPPKINKSFGKFTVQNGKI 826

Query: 836  YYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L+AIK VG     +I +   +   F+S  DFC+++ S  +N+R++ESLV AGA DCF
Sbjct: 827  RFGLSAIKNVGENVVDNIAKVREEKGEFNSFVDFCNKISSGSINKRMVESLVKAGAFDCF 886

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFE 953
            G  R Q+L   + I        K   +   ++F      F D +I        +   +  
Sbjct: 887  GIYRSQILAVYEKIIDSVVNQRKKNIDGQMSLFGSFDDEFKDTEIKYPAIDEFDKKSKLA 946

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV----------------------ATIR 991
             E+ + G Y +GHPL+ Y+ +L+        + +                          
Sbjct: 947  MEKEMTGLYLTGHPLEDYEEVLKNRTSAKTTDIIVDESLEEELIDEVTLHIEEQNSKIKD 1006

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            G+ + +  ++ +  +K TR  S + ++T  +     E   FP
Sbjct: 1007 GDKVIIGGLITNVTRKITRTNSMMAFITLEDLYSSIEVIIFP 1048


>gi|271499510|ref|YP_003332535.1| DNA polymerase III subunit alpha [Dickeya dadantii Ech586]
 gi|270343065|gb|ACZ75830.1| DNA polymerase III, alpha subunit [Dickeya dadantii Ech586]
          Length = 1160

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1049 (40%), Positives = 609/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F   A +
Sbjct: 1    MAE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q +     +  + +L    EGYQ L  L+SR Y    
Sbjct: 60   AGIKPIIGADFYL----------QSEELGDELAHLTVLAMNNEGYQNLTLLISRAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E    G+++L+GG  G I +     +  + E+ +  +++ F  R Y+
Sbjct: 110  GADGPTIDREWLVE-HQAGILLLSGGRHGDIGKFLLRGNQVLVEQSVAFYQQHFPQRFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        ++LA  H LP+VATN+  F+S++D+EAH++ +A+     +   
Sbjct: 169  ELTRTGRPDEESYLHAAIKLATAHGLPVVATNDVCFISQDDFEAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEDEMCELFADIPEALINTVEIAKRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L   A  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMSTEDYLVMCAKKGLEERLAFLFPDEEVRAQRRPEYDERLDIELGVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDLVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFAAEPQLGEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K  L 
Sbjct: 523  TDFAPLYCDQEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARREKQGLE 582

Query: 600  L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                  IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PVDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     I   H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDIQWQHETLKPVLEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA K G+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFKEGAEKMGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +KI     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKIVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I++A  +   F  L D C+R D KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIDARNNGGYFRDLFDLCARTDIKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F     T    + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLADAMKSADQHAKAEAIGQADMFGVLAETPEQVEQSYSTVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG       +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYAGGVRLKDMHPTERGKMTTAVGLVLA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGVCTLDDRSGRLEVMLF 1031


>gi|313888087|ref|ZP_07821761.1| DNA polymerase III, alpha subunit [Peptoniphilus harei
            ACS-146-V-Sch2b]
 gi|312845777|gb|EFR33164.1| DNA polymerase III, alpha subunit [Peptoniphilus harei
            ACS-146-V-Sch2b]
          Length = 1141

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1049 (35%), Positives = 597/1049 (56%), Gaps = 48/1049 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL +HS YSLL+G+  ++ +  ++      A+A+TD  N++ A+ F +    
Sbjct: 1    MNN---FVHLHLHSEYSLLDGSTRISLLPQRVKDLGMDAVALTDHGNMYGAIAFYKACKD 57

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PI+GC++ I  +D        K        ++LL    EG++ ++++VS  Y +D 
Sbjct: 58   AGVKPILGCEVYISEKDMTVKDRTNKR-----YHLILLAENNEGFKNIMKIVSTGY-VDG 111

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLY 183
                 R+    L++  ++G+I  +    G + +A      + A+K  L ++ +FG+   +
Sbjct: 112  YYYKPRVDKEVLKKY-SKGVIATSACLGGEVQKALLNRDKEAAKKAALEYRDIFGEGNFF 170

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ H   ++ R   ++V L+   +LPL A+N+  +L +ED ++HDVL+ +     V+ 
Sbjct: 171  LELQDHGMPEQARVNRELVLLSEELDLPLTASNDVHYLMKEDSKSHDVLLCIQTGKTVND 230

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             DR +  + + YLK+  EM ++F + PEALENTV+IA RC+  ++ H   LP FI  +  
Sbjct: 231  TDRMKFPSDEFYLKSPDEMAALFPENPEALENTVKIAERCNVEIKFHDLHLPEFIVPDG- 289

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                  E  L+  A+ G+  R             + ++R +FE N I  M +  YFLIV 
Sbjct: 290  ---YSHEEYLKKLALEGMIKRYEN-------VTDEIKERFEFEFNTIKNMGYVDYFLIVW 339

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++A+K+ I VGPGRGS AGS+ +Y L ITD+DPL F LLFERFLNP+R+SMPD DID
Sbjct: 340  DFIRYARKHEIQVGPGRGSAAGSMVSYCLGITDVDPLEFDLLFERFLNPERVSMPDIDID 399

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RR+EVI YV  KYG   VAQI+TFG++ A+ A+RDVGRAL M Y++VD + K +P 
Sbjct: 400  FCYERREEVIDYVNRKYGDSHVAQIVTFGTMAARNAIRDVGRALDMSYAKVDYIAKQVPQ 459

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +  +A+     F+     +     L++++ KLEGL RH STHAAG+VI    L++
Sbjct: 460  ALNMTIE-KALEVSETFKGIYDGEEDSRLLIDMALKLEGLPRHTSTHAAGVVISKDELTE 518

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
             VP+ R+    +  TQFNM  +E+ GL+K DFLGL+TLT+++ +++ + +     ++   
Sbjct: 519  YVPLTRN--DKIIATQFNMIELEELGLLKMDFLGLRTLTVIRDAINLIKENQGKTINFDN 576

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
              ++D E   +     TLG+FQ ESSGMR  L+ ++PD   D++A  +L+RPGP+  I  
Sbjct: 577  FNYNDPEVLKMFAKSETLGVFQFESSGMRAFLKELKPDEFSDLVAANALFRPGPMKQIPK 636

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K+ K  I  IHP ++P+LK T G I+YQEQVMQI Q + GYSL  AD++RRA+ KK
Sbjct: 637  FVGSKHDKSTISYIHPKLEPILKSTYGCIVYQEQVMQIVQQIGGYSLGRADIVRRAISKK 696

Query: 721  IKEEMDKQKERFI--------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
              + M+++++ FI         GA  NG+ +  A  I++L+  FADY FNKSH+ AY+V+
Sbjct: 697  KMKVMEEERKNFIYGNKEEGVCGAIANGVDEKSANEIYDLIIDFADYAFNKSHSVAYSVV 756

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +Y+TAW+K +YP EF+AA ++   ++++++  + ++ ++  I+I+PP++N    +F V D
Sbjct: 757  AYRTAWLKYYYPREFMAAQISTYTNDIKQVSLYIEEIKRLGIEILPPNINYSYKNFTVED 816

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAG 889
            N+I + L A+K VG      I+      P+ SL+DF  R+   D   LN+R +ESL+  G
Sbjct: 817  NKIRFGLKAVKNVGDNLIDVIVRTRDKGPYKSLKDFVDRINALDKSALNKRAVESLIRCG 876

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A+D F  +R Q L   + I   +    KN      ++F            L +       
Sbjct: 877  AMDDFRGNRAQYLAIYEGILSSSSNTAKNNVMGQFSLFEEADLQED----LPRLRDFPQK 932

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-----VATIRGNNIRLAAMVVSK 1004
             + + E+ V+G Y SGHPLD Y+ ++ K       +         +R + +++  ++ SK
Sbjct: 933  DKLDMEKEVIGMYISGHPLDPYRELIEKNSSINTNQIFEKYRENLLRRSKVKVGGILKSK 992

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +   T+    + +    +     E   FP
Sbjct: 993  KTMITKTNKMMAFAALEDLFGTIELVIFP 1021


>gi|253687352|ref|YP_003016542.1| DNA polymerase III, alpha subunit [Pectobacterium carotovorum subsp.
            carotovorum PC1]
 gi|251753930|gb|ACT12006.1| DNA polymerase III, alpha subunit [Pectobacterium carotovorum subsp.
            carotovorum PC1]
          Length = 1160

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1049 (39%), Positives = 607/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G   +  ++ K AA   PA+AITD  NL   ++F   A  
Sbjct: 1    MAE-PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    ++  +              +  + +L    EGYQ L  L+S+ Y    
Sbjct: 60   AGIKPIIGADFCVESDE----------LGDELAHLTILAMNNEGYQNLTLLISQAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I  +WL E   EGLI+L+GG  G + R     +   AE+ L  +++ F  R Y+
Sbjct: 110  GAAGPTIDRNWLIE-HREGLILLSGGRRGDVGRFLLRGNQTQAEQCLAFYQEYFPQRYYL 168

Query: 185  NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R  R  +       V+LA  H LP+VATN   F+S +D++AH++ +A+     +   
Sbjct: 169  ELIRTSRPDEESYLHAAVELATKHGLPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L   +  GLE RL         +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDFLVECSKKGLEERLEFLFPDPEVRAARRPEYDERLDIELGVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDKVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R       
Sbjct: 523  TDFAPLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKQGQE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA   G++  +AV IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKNPVEMAKQRGGFEDGAKARGVNGELAVKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L D C+R D KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLADALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYSTVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPITQYIKEIERYAGGVRLKDMHPTDRGKMTTAVGLVLA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGVCTLDDRSGRLEIMLF 1031


>gi|310823737|ref|YP_003956095.1| DNA polymerase III subunit alpha [Stigmatella aurantiaca DW4/3-1]
 gi|309396809|gb|ADO74268.1| DNA polymerase III, alpha subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 1185

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1048 (39%), Positives = 600/1048 (57%), Gaps = 37/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL +H+ YSLL+GA+ + +++  +      ++A+TD  N+F+ ++F +KA  AGI+P
Sbjct: 2    SFTHLHLHTLYSLLDGAIRMKDLIKTVKDKGMSSVAVTDHGNMFATIDFYKKAKDAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +          +          ++L+   AEGY  L  L S  Y+ D      
Sbjct: 62   IIGMEAYVA-----GTKGREDRSEKVAHHLILVAQNAEGYANLRYLSSTAYM-DGFYYHP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            RI    L +  ++GL  LT    G +  A F      A +    +K +F     ++ +Q 
Sbjct: 116  RIDKKVLAQ-HSKGLFALTACLGGEVTSACFRGDMDHARRAATEYKDIFEPGHFFLEVQS 174

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++ +    + QL+   ++PL AT ++ ++  ED  AH++LM +A    +S   R R
Sbjct: 175  NGIPEQDKANENLKQLSRDLDIPLCATADAHYIKREDARAHELLMCIASGKTLSDGKRLR 234

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + D  Y+ +  EM+  F D PEA+ NT  IA +C+  L++  P+LP F   +       
Sbjct: 235  HSTDKLYVTSPQEMLEFFRDTPEAVHNTQVIADQCNLELKLGKPMLPTFKVPD----SHT 290

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             ++ +   A  GL  R  +   A      + YR RL+ ELNVI +M FSGYFLIV DFI 
Sbjct: 291  PDSFMAELAFEGLHERFKELHHAGAKFDPEMYRARLNLELNVIQKMGFSGYFLIVQDFIN 350

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAKK NIPVGPGRGSGAGS+ AYAL ITD+DPL ++LLFERFLNP+R+SMPDFDIDFCQD
Sbjct: 351  WAKKANIPVGPGRGSGAGSLVAYALRITDLDPLPYNLLFERFLNPERVSMPDFDIDFCQD 410

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI+YV  KYG   V QIITFGSL+AK+ LRDV R   +P+S+ DR+ KL+P     
Sbjct: 411  RRDEVIKYVSQKYGEMNVGQIITFGSLKAKSVLRDVCRVFGLPFSEGDRIAKLVPEVLGI 470

Query: 486  PVSLQAIADDSRFREARLADPS----------VDRLLEISQKLEGLYRHASTHAAGIVIG 535
             +    I  ++R +E      +             +LEI+  LEGL+R    HAAG+VI 
Sbjct: 471  TLKEA-IEQEARLKEMMEKPSNVGEVEGKPVTTKDVLEIALALEGLHRQPGMHAAGVVIA 529

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            D+PL + VP+Y+       +TQF    +E AGL+KFDFLGLKTLT++Q +LD + +    
Sbjct: 530  DKPLWEFVPVYQPPGEKTLITQFAKDEVEAAGLVKFDFLGLKTLTVIQNALDLINRNPPN 589

Query: 596  VD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                    IP  D   + L+    T G+FQ+ESSG  + +  ++P C ED+IA  +LYRP
Sbjct: 590  GKKLERQDIPLHDELMWKLMADGDTAGVFQMESSGFTEMVMKLKPSCFEDVIAAGALYRP 649

Query: 653  GPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GP+D+ +V  + NRK+G+E +   HP ++P+LK+T GVI+YQEQVMQI+Q+L GY+L  A
Sbjct: 650  GPLDSGMVDVFINRKHGREPVTYPHPALEPVLKDTYGVIVYQEQVMQISQVLGGYTLGRA 709

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  E M  ++  F+ G  KN +   +A  IF+L+ KFA+YGFNKSH+AAY 
Sbjct: 710  DLLRRAMGKKKAEVMQAERAGFLEGCKKNNVDLKVAGEIFDLMEKFAEYGFNKSHSAAYG 769

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +I+  TAW+K H+PVEF+AA +T E DN +K+ +   +AR+   Q++PP VN   + F  
Sbjct: 770  LITIHTAWLKAHFPVEFMAALLTSEKDNTDKVVRHIGEAREAGHQVLPPDVNQSDMAFGA 829

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             D +I + L AI GVG      I+EA  D  F  L DFC RVDS+++N++VLE+LV AGA
Sbjct: 830  VDGKIRFGLGAINGVGEGAIESIVEARKDGFFKGLFDFCERVDSRRVNKKVLEALVKAGA 889

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----KITLEKFSV 945
             D     R QL ++++         +K++     ++F    G  +      K    +   
Sbjct: 890  FDFEKRPRRQLFETIERAMNRGSASQKDKAAGQSSLFGMLAGPAAGGGGGMKDDYAQVEE 949

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                 R   E+  +GFY SGHPL  Y   L++   +         R   I +  +V + +
Sbjct: 950  WPEKERLAFEKDAIGFYVSGHPLHQYDKELKRYA-RPVTSVQRARRDEKITVGGIVAALR 1008

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            ++ T+ G R+ WVT  + +   E   FP
Sbjct: 1009 ERPTKTGKRMAWVTLEDLSGSIELVCFP 1036


>gi|260767810|ref|ZP_05876745.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
 gi|260617319|gb|EEX42503.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
          Length = 1159

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1048 (39%), Positives = 608/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYGTAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PI+G    +          + +     +  + +L     GY+ L  L+S  YL   
Sbjct: 60   CGVKPIVGADFLV----------RSEEFGDELTRLTVLAKDNVGYKNLTLLISDAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I   WL +   EGLI+L+G   G I RA    +  + EK +  ++  F D  Y+
Sbjct: 110  VQNQPVIDKEWLIKY-AEGLILLSGAKGGDIGRALLKGNQALVEKCVAFYQTHFTDNFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        ++LA   ELP+VATN+ +F+  + ++AH++ +A+     +   
Sbjct: 169  ELVRTGRADEENYLHFALELAEQAELPVVATNDVVFIDPDQFDAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   YL++  EM  +F D+PEALEN+VEIA+RC+  +++       +       
Sbjct: 229  RRPKNYSAQQYLRSEEEMCELFDDIPEALENSVEIAKRCNVTVRLGE-----YFLPAFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               EE   L  K+  GLE RL         +      Y +RL+ EL VI +M F GYFLI
Sbjct: 284  EGMEETEFLVKKSHEGLEERLEFLFPDPAVRAERRPAYDERLEIELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ K+I
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKMI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   +   +E   AD  V  L+++ + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFKAEPALQELYDADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTAI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYCDSEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGLINPRREKAGEP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP  D  ++ +L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVRIESIPLVDPASFRMLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F SGA  NG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRAVFQSGAENNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT +MDN EK+     +  +  + ++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTADMDNTEKVVGLVDECMRMGLTVLPPDINSGLYR 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVDDTGAIVYGIGAIKGVGEGPIEVILEARNKGGYFKDLFDFCARIDIKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + AGALD  G  R  ++ SLD+  K A    +       ++F        + +    +  
Sbjct: 883  ILAGALDRLGPHRAAMMASLDDAVKAASQHHQAEAFGQADMFGVLTDAPEEVERKYIQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L K       E++ T R  ++ +A +V++ 
Sbjct: 943  EWPEKVWLEGERETLGLYLTGHPINAYLKELNKYTSCRLNEAMPTRRDQSLTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGNRIGLMTLDDRSGRMEVMLF 1030


>gi|315179360|gb|ADT86274.1| DNA polymerase III subunit alpha [Vibrio furnissii NCTC 11218]
          Length = 1159

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1048 (39%), Positives = 608/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYGTAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PI+G    +          + +     +  + +L     GY+ L  L+S  YL   
Sbjct: 60   CGVKPIVGADFLV----------RSEEFGDELTRLTVLAKDNVGYKNLTLLISDAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I   WL +   EGLI+L+G   G I RA    +  + EK +  ++  F D  Y+
Sbjct: 110  VQNQPVIDKEWLIKY-AEGLILLSGAKGGDIGRALLKGNQALVEKCVAFYQTHFTDNFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        + LA   ELP+VATN+ +F+  + ++AH++ +A+     +   
Sbjct: 169  ELVRTGRADEENYLHFALDLAEQAELPVVATNDVVFIDPDQFDAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   YL++  EM  +F+D+PEALEN+VEIA+RC+  +++       +       
Sbjct: 229  RRPKNYSAQQYLRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPAFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               EE   L  K+  GLE RL         +      Y +RL+ EL VI +M F GYFLI
Sbjct: 284  EGMEETEFLVKKSHEGLEERLEFLFPDPAVRAERRPAYDERLEIELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ K+I
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKMI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   +   +E   AD  V  L+++ + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFKAEPALQELYDADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTAI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYCDSEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGLINPRREKAGEP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP  D  ++ +L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVRIESIPLVDPASFRMLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F SGA  NG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRAVFQSGAENNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT +MDN EK+     +  +  + ++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTADMDNTEKVVGLVDECMRMGLTVLPPDINSGLYR 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVDDTGAIVYGIGAIKGVGEGPIEVILEARNKGGYFKDLFDFCARIDIKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + AGALD  G  R  ++ SLD+  K A    +       ++F        + +    +  
Sbjct: 883  ILAGALDRLGPHRAAMMASLDDAVKAASQHHQAEAFGQADMFGVLTDAPEEVERKYIQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L K       E++ T R  ++ +A +V++ 
Sbjct: 943  EWPEKVWLEGERETLGLYLTGHPINAYLKELNKYTSCRLNEAMPTRRDQSLTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGNRIGLMTLDDRSGRMEVMLF 1030


>gi|229528752|ref|ZP_04418142.1| DNA polymerase III alpha subunit [Vibrio cholerae 12129(1)]
 gi|229332526|gb|EEN98012.1| DNA polymerase III alpha subunit [Vibrio cholerae 12129(1)]
          Length = 1159

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1048 (40%), Positives = 617/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG    +          Q +     +  + LL     GY+ L  L+S+ YL   
Sbjct: 60   CGVKPIIGADFTL----------QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+
Sbjct: 110  VQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        + +A  ++LP+VATN  +F++EE +EAH++ +A+     +   
Sbjct: 169  ELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++       +       
Sbjct: 229  RRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 284  GGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +    IA +   +E   AD  V  L++  + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNIGLTVLPPDINSGLYR 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V DN  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + AGALD  G  R  ++ S+D+  + A    +       ++F        + +    +  
Sbjct: 883  ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ 
Sbjct: 943  EWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   +
Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1030


>gi|225571413|ref|ZP_03780409.1| hypothetical protein CLOHYLEM_07511 [Clostridium hylemonae DSM 15053]
 gi|225159889|gb|EEG72508.1| hypothetical protein CLOHYLEM_07511 [Clostridium hylemonae DSM 15053]
          Length = 1159

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1048 (35%), Positives = 570/1048 (54%), Gaps = 40/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      ++AITD   +F  ++F + A  AG++P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKECISRVKELGMDSVAITDHGVMFGVIDFYRAAKEAGVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC++ +           G +       +VLL     GY  L++LVSR +  +      
Sbjct: 62   VLGCEVYVAPGSRFDKEA-GGSGEDRYYHLVLLAENDMGYHNLMKLVSRGFT-EGYYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+ L  L+E   EG+I L+   +G + R         A+     ++ +FG+   ++ LQ 
Sbjct: 120  RVDLELLEEYH-EGIIALSACLAGEVQRNIMRGMYSEAKAAAQRYEGIFGEGNFFLELQD 178

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++      +++L+    + LVATN+  +  E+D + HD+L+ +     ++ +DR R
Sbjct: 179  HGMQEQKMVNQSLLRLSQETGIELVATNDIHYTYEDDVKPHDILLCLQTGKKLADEDRMR 238

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  EM  +F    +ALENT +IA RC+  ++     LP++   E       
Sbjct: 239  YEGGQYYIKSEEEMRRLFPYALQALENTQKIADRCNVEIEFGVTKLPKYDVPEG----YT 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     GL+ R   G        +   +RL++EL+VI  M +  YFLIV DFI++
Sbjct: 295  SWEYLRKLCFEGLKRRYPDG-------EEALAERLEYELSVIQSMGYVDYFLIVWDFIKY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK ++I VGPGRGS AGS+ +Y L IT IDP+++ LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 348  AKDHDIIVGPGRGSAAGSIVSYCLDITSIDPIKYQLLFERFLNPERVSMPDIDIDFCFER 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG+L A+  +RDVGR + +PY+ VD + K++P +    
Sbjct: 408  RQEVIDYVVEKYGSDRVVQIVTFGTLAARGVIRDVGRVMDLPYAFVDNIAKMVPTELNMT 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+A +   R     D  V  L+++S++LEGL RH S HAAG+VI  + + + VP+ 
Sbjct: 468  LE-RALAMNPELRRVYQEDEQVRELIDMSKRLEGLPRHTSMHAAGVVISQKAVDEYVPLS 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                     TQF M  +E+ GL+K DFLGL+TLT++Q +        G  +D+  I +DD
Sbjct: 527  LGS-DGSVTTQFTMTTLEELGLLKMDFLGLRTLTVIQNAAQLAGVSTGQPIDMDNIDYDD 585

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +    + T  T GIFQLES GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 586  KKVLSSIGTGRTDGIFQLESGGMKSFMKELKPQSLEDIIAGISLYRPGPMDFIPQYIKGK 645

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  + I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D+LRRAM KK  + M
Sbjct: 646  NNAQSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKGDVM 705

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K+++ F+         G  KNGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 706  KKERQNFVYGNEEEGVPGCIKNGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 765

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            W+K +YPVEF+AA MT  +DN  K+ ++     +Q  I+IMPP +N    +F V + RI 
Sbjct: 766  WLKYYYPVEFMAALMTSCIDNPGKVAEYIYTCRQQMGIEIMPPDINKGLGNFTVENGRIR 825

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y LAAIK +G      I+    A  PF +L+DF  R+  K++N+R LE+ + +GA D  G
Sbjct: 826  YGLAAIKSIGRPVIDAIVSERGAGGPFKTLKDFIERMSGKEVNKRTLENFIKSGAFDSLG 885

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFE 953
             +R Q +     I        K        +F    E       I L             
Sbjct: 886  GTRKQFMIIYVQILDQVNQERKYSMTGQMTLFDMVDEDQKAEFDIPLPDVGEYEKENLLS 945

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQ 1005
             E+ VLG Y SGHP++ Y+   +K   +   +              G    +  ++  K 
Sbjct: 946  FEKEVLGIYLSGHPMEEYEEKWKKSITRTTLDFQLDEETGQTKVHDGAQEVVGGIIADKT 1005

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K T+    + ++T  + A   E   FP
Sbjct: 1006 IKYTKNNKTMAFLTLEDLAGTVEVVVFP 1033


>gi|325263157|ref|ZP_08129892.1| DNA polymerase III, alpha subunit [Clostridium sp. D5]
 gi|324031550|gb|EGB92830.1| DNA polymerase III, alpha subunit [Clostridium sp. D5]
          Length = 1157

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1047 (35%), Positives = 573/1047 (54%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F ++A   GI+P
Sbjct: 2    DFAHLHVHTEYSLLDGSNKIREYVARVKELGMNSAAITDHGVMYGVVDFYREAKKQGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +           G         +VLL     GY  L+++VS+ + ++      
Sbjct: 62   ILGCEVYVAPNSRFDREISGG--DDRYYHLVLLAENNIGYANLMKIVSKGF-VEGYYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+  + L+E   EG+I L+   +G + R       + A+K  L ++ +FG    ++ LQ 
Sbjct: 119  RVDKALLEEYH-EGIIALSACLAGEVQRYLTKGLYEEAKKSALEYQDIFGKGNYFLELQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++     +++Q++   ++ LVATN+  +   ED + HD+L+ +  +  ++ ++R R
Sbjct: 178  HGIPEQTLVNQKLLQMSEELDIELVATNDVHYTLAEDEKPHDILLCIQTAKKLADENRMR 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  EM  +F    +ALENT  IA RC   ++     LP++   +       
Sbjct: 238  YEGGQYYVKSPEEMAHLFPYALQALENTQRIANRCEVEIEFGVLKLPKYDVPDG----LT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GLE      +             L++ELN I  M +  YFLIV DFI++
Sbjct: 294  AWEYLNKLCFEGLEKHYENPSEELRER-------LEYELNTIKNMGYVDYFLIVWDFIKY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N I VGPGRGS AGS+ +Y L ITDIDP+R+ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  AKDNGIAVGPGRGSAAGSIVSYCLEITDIDPIRYQLLFERFLNPERVSMPDIDVDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG+L A+  +RDVGRA+ +PY+ VD + K+IP +    
Sbjct: 407  RQEVIDYVVRKYGKDRVVQIVTFGTLAARGVIRDVGRAMDLPYAFVDTIAKMIPTELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   R+    D  V  L+++S++LEGL RH+S HAAG+VI  + + + VP+ 
Sbjct: 467  ID-KALKMNPELRKTYETDEQVKYLIDMSKRLEGLPRHSSMHAAGVVISQKSVDEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            R  +     TQF M  +E+ GL+K DFLGL+TLT++Q ++  +  +   +D+  I ++D 
Sbjct: 526  RA-QDGSITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVRLVKHKNPGLDMDQIDYNDK 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +    + T  T GIFQLES+GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   KN
Sbjct: 585  DVLDYIGTGKTDGIFQLESAGMKSFMKELKPHSLEDIIAGISLYRPGPMDFIPQYIRGKN 644

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D+LRRAM KK  + M 
Sbjct: 645  DAGSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKGDVMQ 704

Query: 727  KQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K+++ F+         G   NGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTA+
Sbjct: 705  KERQIFVHGDEENGVPGCVANGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTAY 764

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YPVEF+AA MT  ++N  K+ ++    RQ +I+I+PP +N    DF V +  I Y 
Sbjct: 765  LKYYYPVEFMAALMTSVIENPPKVAEYIYTCRQMDIKILPPDINRGVADFSVDEGNIRYG 824

Query: 839  LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSK-KLNRRVLESLVFAGALDCFGY 896
            LAAIK VG      I+    +  PF +LEDF SR+  K  LN+RV+E+ + AGALD    
Sbjct: 825  LAAIKSVGKPVIEAIVSDRNEFGPFKNLEDFISRMSVKDSLNKRVIENFIKAGALDGLDG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     I ++    +K       ++F    ++     +I L              
Sbjct: 885  TRKQFMSIYVQIVEHVNQEKKYAMTGQMSLFDLVDDEQKSEFEIKLPDVGEYTKENLLAF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------TIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPL+  +   RK       +              G    +  M+  K  
Sbjct: 945  EKEVLGIYISGHPLEEDEEKWRKSISATTADFQPDEETGTTKVHDGAKEIIGGMITDKTV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K TR    + ++T  +     E   FP
Sbjct: 1005 KNTRNNQMMAFLTLEDLLGTVEVVVFP 1031


>gi|320159593|ref|YP_004172817.1| DNA polymerase III alpha subunit [Anaerolinea thermophila UNI-1]
 gi|319993446|dbj|BAJ62217.1| DNA polymerase III alpha subunit [Anaerolinea thermophila UNI-1]
          Length = 1321

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1043 (36%), Positives = 575/1043 (55%), Gaps = 35/1043 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G  +   ++ +      PA+AITD   +F  +EF Q A AAGI+P
Sbjct: 2    SFAHLHVHTQYSLLDGFSNPKQLVARAKEMGMPAVAITDHGTMFGVIEFFQAATAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +  +   +M ++      +   ++LL     GYQ L+++ S   L +    + 
Sbjct: 62   IIGLEAYMAAR---RMQDRDPKLDKSSFHLLLLAENQTGYQNLLKIASAAQL-EGFYYNP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            RI   +L E   EGLI  TG  S  I  A      + A K    + ++FG +  +  LQ 
Sbjct: 118  RIDHDFLAE-HHEGLICTTGCLSAEIPEALKEGDVERARKLADWYYEVFGAENFFFELQN 176

Query: 189  HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   + +    Q+++L   +    +ATN+  +++ ED    DVL+ +    ++S+  R R
Sbjct: 177  HDIPELQAVNRQLIELGKRYNARFIATNDVHYINPEDARLQDVLLCIQTGNLLSEPKRFR 236

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            ++    YL++  EM  +F+D+PEAL NT+ IA RC+  L      LPRF   E       
Sbjct: 237  MSVDTFYLRSPEEMSRLFADIPEALSNTLLIAERCNVDLTSKGYHLPRFPVPEG----YT 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E  LR     GL  R               R+RL++EL VI +M F  YFLIV D  Q+
Sbjct: 293  AETYLRELCEQGLRRRYG-----TRADDPVVRERLEYELRVIHQMGFDAYFLIVWDLTQY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++N I     RGS AGS+ AY L IT ++P+   L+FERFLNP R+SMPD D+DF  D 
Sbjct: 348  AQRNGIWYN-ARGSAAGSMVAYVLGITMVEPIEHGLIFERFLNPGRISMPDIDLDFQDDL 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R  ++ Y  ++YG ++VAQIITFG+L AKAA+RDVGR + +P ++VDRL K++   P   
Sbjct: 407  RPRMLEYCASRYGDDKVAQIITFGTLGAKAAIRDVGRVMDIPLAEVDRLSKMLSTAPNKN 466

Query: 487  VSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V+++  +     F+ A      +  L++ + ++EG+ R+A THAAG+VI D P+ Q +P+
Sbjct: 467  VTIREALETVPEFKAAYEEADYLRDLIDTAARMEGVVRNAGTHAAGVVITDEPIVQYLPL 526

Query: 546  YRDVRSD-----LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLS 599
            +R            VTQF M  IE  GL+K DFLGL TLT++Q++   + QR     +L 
Sbjct: 527  HRPTSGSEESPIKTVTQFEMSIIESLGLLKVDFLGLATLTIMQRACQLIEQRHGVRLNLH 586

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD ETY  L    T G+FQLE SGM + L  M+P  ++ +IA+V+LYRPGP+D I 
Sbjct: 587  NIPTDDPETYEFLAQGHTAGVFQLEGSGMTRFLVQMRPQTLDHVIAMVALYRPGPLDFIP 646

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  R +G+E +   HP ++P+ KET G+ +YQEQ+M+ A  L+GY++SE+D LR+A+ K
Sbjct: 647  TYIRRMHGEEPVQYRHPALEPIFKETYGIPVYQEQIMRAAVELAGYTMSESDELRKAIAK 706

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K+++ K +E+FI GA + GI +  A  IF+   +FA YGFNKSHAA Y VI+ QTA++
Sbjct: 707  KQKDKLLKHREKFIKGAVQRGIDEETAAAIFDDWEEFARYGFNKSHAADYGVIAVQTAYL 766

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----R 834
            K HY  E++ A ++   +  EK+  +  DA+   + ++PP +NT   DF + D       
Sbjct: 767  KKHYTAEYMTALLSASKNETEKVAFYVADAKNLGVPVLPPDINTSGWDFTIEDQPDGKPA 826

Query: 835  IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L A+K VG      I++A  +  PF SL DF SRVD + + +R LE L+  GALD 
Sbjct: 827  IRFGLGAVKNVGQNAVEMILQAREEGGPFQSLTDFASRVDLRSVGKRSLECLIKVGALDR 886

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT---LEKFSVENSSV 950
            FG +R  LL+ +D I   +    +  ++     F    G   D I    L   +  ++  
Sbjct: 887  FG-NRKALLEIMDTILNVSASHFRAVSSGQLTFFGATVGANVDAIENIHLPFTTSMDTRE 945

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            + E E+ ++G Y S HPL+ Y   +RK       +         + +  MV   +Q +T+
Sbjct: 946  QLEWERELIGLYVSDHPLNPYWNSMRKRLSYYSNQLADLRNHTPVSVGGMVTRFRQHQTK 1005

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
             G  + +VT  +     E   FP
Sbjct: 1006 NGKPMAFVTLEDLRGPIELVIFP 1028


>gi|227114702|ref|ZP_03828358.1| DNA polymerase III subunit alpha [Pectobacterium carotovorum subsp.
            brasiliensis PBR1692]
          Length = 1160

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1049 (39%), Positives = 599/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G   +  ++ K AA   PA+AITD  NL   ++F   A  
Sbjct: 1    MAE-PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    ++  +              +  + +L     GYQ L  L+S  Y    
Sbjct: 60   AGIKPIIGADFCVESDE----------LGDELAHLTVLAMNNAGYQNLTLLISHAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E   EGLI+L+GG  G + R     +   AE+ L  +++ F  R Y+
Sbjct: 110  GAAGPTIDRDWLVE-HQEGLILLSGGRRGDVGRFLLRGNQTQAEQCLAFYQEHFPQRYYL 168

Query: 185  NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R  R  +       V+LA  H +P+VATN   F+S +D++AH++ +A+     +   
Sbjct: 169  ELIRTSRPDEESYLHAAVELATKHGVPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L   +  GLE RL         +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMSTEDFLVQCSKKGLEERLEFLFPDPEVRAERRPEYDERLDIELGVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDKVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K  L 
Sbjct: 523  TDFAPLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKQGLE 582

Query: 600  L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                  IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA   G++  +AV IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKNPVEMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L D C+R D KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F          + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLPDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYSTVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP+  Y   + +       ++   T RG       +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPITQYIKEIERYASGVRLKDMHPTDRGKMTTAVGLVLA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGVCTLDDRSGRLEIMLF 1031


>gi|238792741|ref|ZP_04636372.1| DNA polymerase III subunit alpha [Yersinia intermedia ATCC 29909]
 gi|238727849|gb|EEQ19372.1| DNA polymerase III subunit alpha [Yersinia intermedia ATCC 29909]
          Length = 1171

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1045 (39%), Positives = 598/1045 (57%), Gaps = 38/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  AGI+
Sbjct: 15   PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHGAGIK 74

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    G   
Sbjct: 75   PIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGYGAAG 124

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   EGLI+L+GG  G + +     +    ++ L  +++ F    Y+ L R
Sbjct: 125  PIIDRDWLIK-HKEGLILLSGGRMGDVGKFMLRGNQAQVDQCLEFYQEHFPGSYYLELIR 183

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                D        V LA    LP+VATN+  F++E D++AH++ +A+     +    RP+
Sbjct: 184  TGRPDEENYLHAAVTLATERGLPVVATNDVRFIAESDFDAHEIRVAIHDGFTLVDPKRPK 243

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++       +   +    +  
Sbjct: 244  NYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPTGEMS 298

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGY---HAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E+ L  K+  GLE RL               +Y +RLD EL VI +M F GYFLIV +F
Sbjct: 299  TEDFLVEKSKQGLEERLEFLFPDPEVRVQKRPEYDERLDIELKVINQMGFPGYFLIVMEF 358

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 359  IQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 418

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP
Sbjct: 419  MEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP 478

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   
Sbjct: 479  GMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFA 537

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  +        +D+
Sbjct: 538  PLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINAKRAKTGLEPIDI 597

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + 
Sbjct: 598  ASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSG 657

Query: 659  VV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD
Sbjct: 658  MVDNFIDRKHGREALSYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGAD 717

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 718  MLRRAMGKKNPAEMAKQRSVFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYAL 777

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V 
Sbjct: 778  VSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPEINSGLYHFHVN 837

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D   I Y + AIKGVG      I+EA  +   F  L D C+RVD+KKLNRR+LE L+ +G
Sbjct: 838  DEGEIVYGIGAIKGVGEAPIEAILEARKEGGHFKDLFDLCARVDTKKLNRRILEKLIMSG 897

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948
            A D  G  R  L+ SL    K A    K       ++F          + +         
Sbjct: 898  AFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQADMFGVLADAPEQVEQSYANVPPWQE 957

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             +  + E+  LG Y +GHP+  Y   + +  G +  ++   T RG       +V++ +  
Sbjct: 958  QIVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVIAARVM 1017

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G+RIG  T  + +   E   F
Sbjct: 1018 VTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|170023330|ref|YP_001719835.1| DNA polymerase III subunit alpha [Yersinia pseudotuberculosis YPIII]
 gi|169749864|gb|ACA67382.1| DNA polymerase III, alpha subunit [Yersinia pseudotuberculosis YPIII]
          Length = 1171

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1049 (39%), Positives = 601/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  
Sbjct: 12   MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHG 70

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    
Sbjct: 71   AGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY 120

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL +   EGLI+L+GG  G + +     +    ++ L  +++ F D  Y+
Sbjct: 121  GAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYL 179

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  F+ E D++AH++ +A+     +   
Sbjct: 180  ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 239

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 240  KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 294

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGY---HAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L  KA  GLE RL               +Y +RLD EL VI +M F GYFLI
Sbjct: 295  GEMSTEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELKVINQMGFPGYFLI 354

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD
Sbjct: 355  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFD 414

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 415  VDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 474

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 475  PLDPGMTLE-KAFAAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 533

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R       
Sbjct: 534  TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINVRRAKTGLE 593

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 594  PIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 653

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL
Sbjct: 654  LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 713

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 714  GGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSA 773

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    
Sbjct: 774  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 833

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA  +   F  L D C+RVD+KKLN+R+LE L
Sbjct: 834  FHVNDDGEIVYGIGAIKGVGEGPIEAILEARKEGGYFKELFDLCARVDTKKLNKRILEKL 893

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F          + +     
Sbjct: 894  IMSGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVP 953

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +V++
Sbjct: 954  PWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIA 1013

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1014 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|167760733|ref|ZP_02432860.1| hypothetical protein CLOSCI_03118 [Clostridium scindens ATCC 35704]
 gi|167661620|gb|EDS05750.1| hypothetical protein CLOSCI_03118 [Clostridium scindens ATCC 35704]
          Length = 1158

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1047 (35%), Positives = 569/1047 (54%), Gaps = 39/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      ++AITD   +F  ++F + A A GI+P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKECVSRVKELGMDSVAITDHGVMFGVIDFYRAAKAVGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +           G +       +VLL  T  GY  L+++VSR +  +      
Sbjct: 62   ILGCEVYVAPGSRFDKEAVG-SGDNRYYHLVLLAETDLGYHNLMKIVSRGFT-EGYYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+ +  L+E   +G+I L+   +G + +       +  +   L ++++FG+   ++ LQ 
Sbjct: 120  RVDMEILKEFH-QGIIALSACLAGEVQKNIVRGMYEEGKAAALRYQEIFGEGNFFLELQD 178

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++      ++++A   ++ LVATN+  +   ED +AHD+L+ +     V+ +DR R
Sbjct: 179  HGIQEQKLVNQSLLRMAKETQIGLVATNDVHYTYAEDEKAHDILLCIQTGKKVADEDRMR 238

Query: 248  VTPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y     E +   F    EALENT +IA RC+  ++     LP++   E       
Sbjct: 239  YEGGQYYIKSEEEMKTLFPYALEALENTQKIADRCNVEIEFGVTKLPKYDVPEG----YT 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GL+ R   G  +        ++RL++EL+VI  M +  YFLIV DFI++
Sbjct: 295  SWEYLNKLCYDGLKERYPDGEGSL-------KERLEYELSVIKSMGYVDYFLIVWDFIKY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ ++I VGPGRGS AGS+ +Y L IT IDP+++ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 348  ARDHDIMVGPGRGSAAGSIVSYTLGITSIDPIKYQLLFERFLNPERVSMPDIDVDFCFER 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG++ A+  +RDVGR + +PY+ VD + K++P +    
Sbjct: 408  RQEVIDYVVEKYGSDRVVQIVTFGTMAARGVIRDVGRVMDLPYAFVDGIAKMVPTELNIT 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +  F+     D  V  L+++S++LEGL RH S HAAG+VI  + + + VP+ 
Sbjct: 468  LE-RALTVNPEFKRMYQEDEQVRELIDMSKRLEGLPRHTSMHAAGVVISQKAIDEYVPLS 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                     TQF M  +E+ GL+K DFLGL+TLT++Q ++   ++     +++  I ++D
Sbjct: 527  LGS-DGSVTTQFTMTTLEELGLLKMDFLGLRTLTVIQDAVKLASRSSGKDINMEQIDYND 585

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                  + T  T GIFQLES GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 586  KAVLDSIGTGRTDGIFQLESGGMKSFMKELKPQNLEDIIAGISLYRPGPMDFIPQYIKGK 645

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  + I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D+LRRAM KK  + M
Sbjct: 646  NHMDNITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAMSKKKGDVM 705

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K+++ F+         G   NGI +  A  I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 706  KKERQSFVYGNEAEGVPGCIANGIDEKTANKIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 765

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+K +YPVEF+AA MT  ++N  K+ ++    RQ  I+I+PP +N     F V +  I Y
Sbjct: 766  WLKYYYPVEFMAALMTSVIENPGKVSEYIYTCRQMGIEILPPDINKGEGSFSVDNGNIRY 825

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LAAIK +G    + I+ E  A   F +++DF  R+  K++N+R +ES + +GA D  G 
Sbjct: 826  GLAAIKSIGKPVIQAILTEREARGEFKNMKDFIERLSGKEVNKRTIESFIKSGAFDSLGG 885

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     I        K       ++F    E       I L          +   
Sbjct: 886  TRKQFMVIYVQILDQVNQERKYSMTGQMSLFDMVDEDQKAEFDIPLPDVGEYEKETKLAF 945

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHP++ Y+   RK   K   +              G    +  M+  K  
Sbjct: 946  EKEVLGVYLSGHPMEEYEEKWRKSISKTTLDFQLVEDTGHTKVSDGAREIIGGMITDKTI 1005

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + +VT  +     E   FP
Sbjct: 1006 KYTKNNKVMAFVTLEDMLGSVEVVVFP 1032


>gi|163815364|ref|ZP_02206739.1| hypothetical protein COPEUT_01529 [Coprococcus eutactus ATCC 27759]
 gi|158449338|gb|EDP26333.1| hypothetical protein COPEUT_01529 [Coprococcus eutactus ATCC 27759]
          Length = 1195

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1062 (34%), Positives = 572/1062 (53%), Gaps = 49/1062 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+GA  +  ++ +       ++AITD   ++  +EF +   A GI+PI
Sbjct: 3    FTHLHVHTGYSLLDGAAKIKELVHRAKELGYDSLAITDHGVMYGVIEFYEACMAEGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +          +          +VLL  T +GY  L ++V+R +  +      R
Sbjct: 63   LGCEVYVSPGSRFDR--EVGKGDDRYYHLVLLAETDQGYHNLSKIVTRGFT-EGFYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
            + +  L++   EG+I L+   +G +      N  + A K  + ++ +FG+   ++ +Q H
Sbjct: 120  VDMEVLEKYH-EGIIALSACLAGEVATHLRKNDYEGARKAAVKYRNIFGENNYFLEMQDH 178

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D+    + V++L+    +P+V TN+S ++  ED+EAHDVL+ +  +  V  ++R R 
Sbjct: 179  GIPDQATVNAGVMRLSKELGIPMVVTNDSHYIYAEDWEAHDVLLCIQTNRKVQDENRMRY 238

Query: 249  T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                +YLK++ EM  +F    EALENT +IA RC+  +      +PRF   +        
Sbjct: 239  DGGQYYLKSKEEMAELFPYALEALENTHKIAERCNVKIIFGEQKVPRFDVPDG----YTA 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ-----DYRQRLDFELNVIARMKFSGYFLIVAD 362
            E  L      G+E +           ++     D RQR+D+EL+VI  M F  YFLIV D
Sbjct: 295  EEYLEKLVYDGMERKYGIKYADTEDLSEGDKGYDVRQRIDYELSVIKSMGFVDYFLIVWD 354

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI +AK N I VGPGRGS  GSV AY L IT I+P+++ LLFERFLNP+R+SMPD DIDF
Sbjct: 355  FIHFAKTNGIAVGPGRGSAVGSVVAYCLDITTIEPMQYDLLFERFLNPERVSMPDIDIDF 414

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C  RR EVI Y   KYG E V QII + ++ A+  +RDVGRA+ +PY+Q D L K IP +
Sbjct: 415  CYIRRQEVIDYCVKKYGEECVTQIIAYQTMGARNVIRDVGRAMDIPYAQCDALAKAIPAE 474

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +   A+     F++       + +L++I++KLEGL R+A  HAAG+VIG   + + 
Sbjct: 475  KDMTID-IALKTSKDFQDMYRGSDEIRKLVDIAKKLEGLPRNAGMHAAGVVIGREAIEEY 533

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLI 601
             P+         VTQF    +E  G++K DFLGL+T T++Q ++  + +   +  D+  I
Sbjct: 534  APLSVGA-EGAVVTQFEKNTVEHLGMLKMDFLGLRTATVIQDTVKLIKENTGRDLDIDNI 592

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +DD     L+    T G+FQLES GM+  +  ++P  ++D+IA V+L+RPGP+  I  Y
Sbjct: 593  DYDDPNILGLMGQGKTEGMFQLESPGMKNFMMKLKPQSLDDVIAGVALFRPGPMQFIDDY 652

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K  +E +    P ++ +L+ T G IIYQEQVMQI   L+GY+L  +D++RRAM KK 
Sbjct: 653  IRGKENRELVRYDTPELEEILEPTYGCIIYQEQVMQIVMKLAGYTLGRSDLVRRAMAKKK 712

Query: 722  KEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
             EEM+K+++ F+         G   NGIS+ +A  IF+ + KFA+Y FNKSH+ AYAV++
Sbjct: 713  PEEMEKERKNFVYGNKELNVPGCVANGISEDVANKIFDEMMKFAEYAFNKSHSVAYAVLA 772

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
             QTA++K +YPVEF+AA ++  +DN  K+ K+    +Q N++I+PP +N     F + D 
Sbjct: 773  AQTAYLKYYYPVEFMAALISSVLDNNGKVAKYINVCKQMNVEILPPDINEGVAKFSISDG 832

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            +I Y L+ IK VG      I+E    +  F  L DF +R+ SK  N++ +E+L+ +GA D
Sbjct: 833  KIRYGLSGIKSVGAAVVDRIVEERKKNGRFKDLHDFLTRMPSKDTNKKTVEALILSGAFD 892

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSV 950
              G +R Q+  +L  I +      K+R +   ++F      F+   ++   +      + 
Sbjct: 893  GMGANRKQMFMALPAISEETARERKSRESGQLSLFDIMGEDFAASTRVPYPEVEEYPDTE 952

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------------------TIR 991
            +   E+ VLG Y SGHPL  Y  +L+K       +                         
Sbjct: 953  KLSLEKSVLGVYISGHPLGKYVDLLQKNCTAQSLDFAGDSEDDAELDDAGTDEKDRKIQD 1012

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            G    +  ++     K TR    + +VT  +   + +   FP
Sbjct: 1013 GAVYVVGGIITDVSVKLTRNNQNMAYVTLEDLVGQIDIVVFP 1054


>gi|261822584|ref|YP_003260690.1| DNA polymerase III subunit alpha [Pectobacterium wasabiae WPP163]
 gi|261606597|gb|ACX89083.1| DNA polymerase III, alpha subunit [Pectobacterium wasabiae WPP163]
          Length = 1160

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1049 (39%), Positives = 603/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G   +  ++ K AA   PA+AITD  NL   ++F   A  
Sbjct: 1    MAE-PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG    ++  +              +  + +L    EGYQ L  L+S  Y    
Sbjct: 60   AGVKPIIGADFYVESDE----------LGDELAHLTVLAMNNEGYQNLTLLISHAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E   EGLI+L+GG  G + R     +   AE+ +  +++ F  R Y+
Sbjct: 110  GAAGPTIDRDWLIE-HQEGLILLSGGRRGDVGRFLLRGNQAQAEQCVAFYQEHFPQRYYL 168

Query: 185  NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R  R  +       V+LA  + LP+VATN   F+S +D++AH++ +A+     +   
Sbjct: 169  ELTRTSRPDEESYIHSAVELATKYGLPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDP 228

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPRHYSPQQYMRSEEEMCELFADIPEALVNSVEIAKRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +    + L   +  GLE     L      +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GEMSTADFLVQCSKKGLEDRLEFLFPDPEVRAARRLEYDERLDIELGVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDKVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R       
Sbjct: 523  TDFAPLYCDSEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKQGQE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA   G++  +AV IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKNPVEMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L D C+R D KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F          + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLADALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYSTVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPITQYIKEIERYAGGVRLKDMHPTDRGKMTTAVGLVLA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGVCTLDDRSGRLEIMLF 1031


>gi|82542783|ref|YP_406730.1| DNA polymerase III subunit alpha [Shigella boydii Sb227]
 gi|81244194|gb|ABB64902.1| DNA polymerase III alpha subunit [Shigella boydii Sb227]
          Length = 1142

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1049 (40%), Positives = 621/1049 (59%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++
Sbjct: 110  GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLI
Sbjct: 284  GDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG++  +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGVNAELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|85716997|ref|ZP_01047960.1| DNA polymerase III subunit alpha [Nitrobacter sp. Nb-311A]
 gi|85696199|gb|EAQ34094.1| DNA polymerase III subunit alpha [Nitrobacter sp. Nb-311A]
          Length = 1167

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 526/1029 (51%), Positives = 705/1029 (68%), Gaps = 14/1029 (1%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS+YSLL+G++ +  + +   AD QPA+A+TDT+N+F ALEFS K    GIQPI
Sbjct: 12   FVHLHVHSAYSLLKGSIKIQKLAELARADHQPALALTDTDNMFGALEFSDKVAGYGIQPI 71

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+L +D  D     +        +  +VLL +   GY+ L+ L SR +L      S  
Sbjct: 72   VGCELAVDFGD----QDANARNAIPLARVVLLATREAGYRNLMRLNSRAFLETPEHCSPH 127

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   WL++   EGLI LTGG  GP+  AF  + S +A  R      +FGDRLYV LQRH 
Sbjct: 128  VSWEWLRDE-NEGLIALTGGPDGPVAMAFNADHSALATARCDQLAMIFGDRLYVELQRHG 186

Query: 191  GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +R  E  ++ LAY   LPLVATN   F + +DYEAHD L+ +A   +V++ +R ++T
Sbjct: 187  LDKERRVEGALIDLAYAKGLPLVATNEPYFATSDDYEAHDALLCIAGGRLVAETEREQLT 246

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE---CDDIQKE 306
            PDH  K R+EM  +F+D+PEAL +T+EIA RC+F  +   PILPRF         D + +
Sbjct: 247  PDHRFKTRAEMAVLFADIPEALASTIEIAERCAFRPRTRKPILPRFTVASDAGAADGKND 306

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E  ELR +A  GL  RLA   ++ G   +DY +RL FEL+VI RM ++GYFLIVADFI++
Sbjct: 307  EAAELRRQAEEGLAKRLAVHGVSTGMTEEDYGKRLGFELDVITRMNYAGYFLIVADFIKY 366

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+SMPDFDIDFCQ+R
Sbjct: 367  AKSKGIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQER 426

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P +PA P
Sbjct: 427  RGEVIDYVQKRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPAAP 486

Query: 487  VS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            VS  QAI  + + +  R  DP V R  +I+Q+LEGL RHASTHAAGIVIGDRPLS+LVP+
Sbjct: 487  VSLKQAIEGEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSELVPL 546

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L QR + VDL+ +P DD
Sbjct: 547  YRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRNIHVDLATLPLDD 606

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              +Y +LT    +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPGP+ NI  Y  RK
Sbjct: 607  AASYQMLTQGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCARK 666

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LRRAMGKKI+ EM
Sbjct: 667  HGEEESEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLRRAMGKKIRAEM 726

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +KQ+  F++G+ K+G+ +  A  IFELLAKFADYGFNKSHAAAYA++SYQTA+MK HYPV
Sbjct: 727  EKQRAIFVAGSVKSGVPQGQAETIFELLAKFADYGFNKSHAAAYALVSYQTAYMKAHYPV 786

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EFLAASMTL+M N +K+ +F  +A++  I++  PSVN     F+V +  I Y+LAA+KGV
Sbjct: 787  EFLAASMTLDMSNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVSEGVICYALAALKGV 846

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G+     I+EA  +  F SL DF +RV  + +N+RV+ESL  AGA D    +R ++    
Sbjct: 847  GSHAVELIVEARKNGLFTSLADFAARVPPRAINKRVIESLAAAGAFDALEPNRARVFAGA 906

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            + I    Q   +  T    ++F       +  I L +      + R   E   +GF+ SG
Sbjct: 907  EAILAACQRSHEAMTLGQNDMFGGMAD--APDILLPRVEPWLPADRLRREYEAVGFFLSG 964

Query: 966  HPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            HPLD Y   L+++ ++ + E   A   G    ++AA VVS+ +++T+ G+++G +  S+P
Sbjct: 965  HPLDDYVTALKRLRVQSWVEFSRAVKAGATAGKVAATVVSRTERRTKTGNKMGIIGLSDP 1024

Query: 1024 AKEYEANFF 1032
               +EA  F
Sbjct: 1025 TGHFEAVLF 1033


>gi|218688059|ref|YP_002396271.1| DNA polymerase III subunit alpha [Escherichia coli ED1a]
 gi|306815217|ref|ZP_07449366.1| DNA polymerase III subunit alpha [Escherichia coli NC101]
 gi|331661255|ref|ZP_08362187.1| DNA polymerase III subunit alpha [Escherichia coli TA206]
 gi|218425623|emb|CAR06409.1| DNA polymerase III alpha subunit [Escherichia coli ED1a]
 gi|305850879|gb|EFM51334.1| DNA polymerase III subunit alpha [Escherichia coli NC101]
 gi|331052297|gb|EGI24336.1| DNA polymerase III subunit alpha [Escherichia coli TA206]
          Length = 1160

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/1049 (40%), Positives = 621/1049 (59%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++
Sbjct: 110  GTAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  +A  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLDTELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|91209254|ref|YP_539240.1| DNA polymerase III subunit alpha [Escherichia coli UTI89]
 gi|117622469|ref|YP_851382.1| DNA polymerase III subunit alpha [Escherichia coli APEC O1]
 gi|191172778|ref|ZP_03034315.1| DNA polymerase III, alpha subunit [Escherichia coli F11]
 gi|218557125|ref|YP_002390038.1| DNA polymerase III subunit alpha [Escherichia coli S88]
 gi|237704343|ref|ZP_04534824.1| DNA polymerase III subunit alpha [Escherichia sp. 3_2_53FAA]
 gi|331681569|ref|ZP_08382206.1| DNA polymerase III subunit alpha [Escherichia coli H299]
 gi|91070828|gb|ABE05709.1| DNA polymerase III alpha subunit [Escherichia coli UTI89]
 gi|115511593|gb|ABI99667.1| DNA polymerase III alpha subunit [Escherichia coli APEC O1]
 gi|190906928|gb|EDV66530.1| DNA polymerase III, alpha subunit [Escherichia coli F11]
 gi|218363894|emb|CAR01559.1| DNA polymerase III alpha subunit [Escherichia coli S88]
 gi|222032014|emb|CAP74753.1| DNA polymerase III subunit alpha [Escherichia coli LF82]
 gi|226902255|gb|EEH88514.1| DNA polymerase III subunit alpha [Escherichia sp. 3_2_53FAA]
 gi|294489552|gb|ADE88308.1| DNA polymerase III, alpha subunit [Escherichia coli IHE3034]
 gi|307629760|gb|ADN74064.1| DNA polymerase III subunit alpha [Escherichia coli UM146]
 gi|312944792|gb|ADR25619.1| DNA polymerase III subunit alpha [Escherichia coli O83:H1 str. NRG
            857C]
 gi|320196939|gb|EFW71560.1| DNA polymerase III alpha subunit [Escherichia coli WV_060327]
 gi|323950817|gb|EGB46694.1| DNA polymerase III [Escherichia coli H252]
 gi|323955145|gb|EGB50920.1| DNA polymerase III [Escherichia coli H263]
 gi|331081790|gb|EGI52951.1| DNA polymerase III subunit alpha [Escherichia coli H299]
          Length = 1160

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/1049 (40%), Positives = 621/1049 (59%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++
Sbjct: 110  GTAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  +A  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|227873299|ref|ZP_03991564.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
 gi|227840866|gb|EEJ51231.1| DNA-directed DNA polymerase [Oribacterium sinus F0268]
          Length = 1156

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/1048 (34%), Positives = 574/1048 (54%), Gaps = 42/1048 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VHSSYSLL+G+  +  ++ ++      +IA+TD   ++  ++F ++A   GI P
Sbjct: 2    AFTHLHVHSSYSLLDGSGKIPEMIARVKELGMDSIALTDHGVMYGVIDFYKEAKKQGIHP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G ++ +      +   +G         +VLL     GY  L++LVS  +  +      
Sbjct: 62   ILGSEIYLSRSMEERFIQKGGAR---YYHLVLLAENDIGYHNLMKLVSLGFT-EGYYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+  + L++   EG+I L+   +G + R    +  + A++  L ++ +FG    ++ +Q 
Sbjct: 118  RVDYAVLEKYH-EGIIALSACLAGEVSRNLRLSQYEEAKQAALRYEGIFGKGNFFLEMQD 176

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++      +++L     +PLV TN+  +  +ED +AHD+L+ +     +  +DR R
Sbjct: 177  HGYAEQKLVNQGMLRLHEETGIPLVVTNDIHYTYKEDAKAHDILLCLQTGKKLMDEDRMR 236

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  Y+K+  EM  +F    EALENT +IA+RC   +      LP++   E       
Sbjct: 237  YPGGQFYIKSEEEMEELFPYTKEALENTGKIAKRCQVNITFGEYHLPKYPVPEG----HT 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L    + GLE          G   Q+ + RL +ELN I+ M F  YFL+V D+I +
Sbjct: 293  AYSYLEELCLKGLEK-------RYGESWQENKDRLYYELNTISDMGFVDYFLVVWDYIHF 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + I VGPGRGS AGS+ AYA+ ITD+DP+   LLFERFLNP+R++MPD D+DF  +R
Sbjct: 346  AKTHGIAVGPGRGSAAGSIVAYAIGITDVDPMEHQLLFERFLNPERVTMPDIDVDFEYER 405

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG E+V+QIITFG+L A+  +RDVGR L +PY++ D+L KL+PN+    
Sbjct: 406  RQEVIDYVGKKYGKEQVSQIITFGTLAARGVIRDVGRVLDIPYAKCDQLAKLVPNELNMT 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +    ++     +     +    +++++  +LEGL RH+S HAAG+VI   P+S  VP+ 
Sbjct: 466  LEKA-LSVSKELKNLYDTEEETRQMIDMCLRLEGLPRHSSMHAAGVVIAGSPVSDYVPLS 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDD 605
            R        TQF M  IE+ GL+K DFLGL+TLT++Q +L F+ +      DL  +P+DD
Sbjct: 525  RGS-DGSITTQFTMTTIEELGLLKMDFLGLRTLTVIQDALRFIEENHGVKLDLDKLPYDD 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             + Y +L+     G+FQLES+GM   ++ +QP C++DIIA V+LYRPGP+D I  Y   K
Sbjct: 584  AKVYAMLSKGDCAGVFQLESAGMVNFMKRLQPSCLDDIIAGVALYRPGPMDFIPDYIAGK 643

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
                 +      ++ +LK T GVI+YQEQVMQI + L+G+++  +D+LRRAM KK    M
Sbjct: 644  KNPATVHYDCKEMESILKNTYGVIVYQEQVMQIVRDLAGFTMGGSDLLRRAMSKKKTSVM 703

Query: 726  DKQKERFISG--------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            ++ ++ F+ G            GIS+ +A  I++ +  FA Y FNKSHA +YA++SYQTA
Sbjct: 704  EEARQSFVYGNAKEGIAGCISKGISEEVANRIYDKMIDFAKYAFNKSHAVSYALLSYQTA 763

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +Y  EF AA+M+  MDN  K  ++ + AR+  I+I+PP +    V F V + +I Y
Sbjct: 764  YLKYYYAPEFYAATMSSFMDNTVKTAEYIEVAREQGIEILPPDIQLAEVGFSVKEGKIRY 823

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L+A+KGVG + A  I+    + PF + ED   R+  + +NRR +ES + AGA D    +
Sbjct: 824  GLSAVKGVGRSAAEQIILERKNGPFRNFEDLVQRLSQRGINRRAMESFIHAGAFDNLEGN 883

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK----GTFSDKITLEKFSVENSSVRFE 953
            R + L  L  + +  Q  +K++     ++              ++          +    
Sbjct: 884  RREKLVMLPEVLEDLQKGKKDQIAGQMSLLDLLGEEAEERQEFELIFPDLEEFPKAELLR 943

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQ 1005
            NE+  LG Y SGHPLD  + +L+++  +   +            +   +  +  M+    
Sbjct: 944  NEKDALGVYLSGHPLDSDRALLKQLCSRRARDFSLEAIEEEKNLVDDEHCTVGGMITGIN 1003

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            ++ T+K   + +VT  +     E   FP
Sbjct: 1004 RRITKKNDMMAFVTLEDNTGSMEVVVFP 1031


>gi|254225765|ref|ZP_04919370.1| DNA polymerase III, alpha subunit [Vibrio cholerae V51]
 gi|125621671|gb|EAZ50000.1| DNA polymerase III, alpha subunit [Vibrio cholerae V51]
          Length = 1164

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1048 (40%), Positives = 615/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A  
Sbjct: 6    MSD-PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 64

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG    +          Q +     +  + LL     GY+ L  L+S+ YL   
Sbjct: 65   CGVKPIIGADFTL----------QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGH 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  +WL E   EGLI+L+GG  G + RA    + Q  E+ +  ++  F D  Y+
Sbjct: 115  VQHQPVIDKAWLVE-HAEGLIVLSGGKRGEVGRALLKGNQQQVERCIEFYQTHFADHFYL 173

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        + +A  ++LP+VATN  +F++EE +EAH++ +A+     +   
Sbjct: 174  ELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 233

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++       +       
Sbjct: 234  RRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPT 288

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 289  GGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQIELDVINQMGFPGYFLI 348

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 349  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 408

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 409  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 468

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +    IA +   +E   AD  V  L++  + LEG  R+A  HA G+VI    +
Sbjct: 469  PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 527

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 528  TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 587

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 588  PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 647

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 648  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 707

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 708  GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 767

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    
Sbjct: 768  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 827

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V DN  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L
Sbjct: 828  FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKL 887

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + AGALD  G  R  ++ S+D+  + A    +       ++F        + +    +  
Sbjct: 888  ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVP 947

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                  R E E+  LG Y +GHP+D Y   L K       E+  T R  ++ +A +V++ 
Sbjct: 948  EWPEKARLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAA 1007

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   +
Sbjct: 1008 RVMTTKRGTRIGLMTLDDRSGRMEVMLY 1035


>gi|254491862|ref|ZP_05105041.1| DNA polymerase III, alpha subunit subfamily, putative [Methylophaga
            thiooxidans DMS010]
 gi|224463340|gb|EEF79610.1| DNA polymerase III, alpha subunit subfamily, putative [Methylophaga
            thiooxydans DMS010]
          Length = 1161

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1046 (40%), Positives = 617/1046 (58%), Gaps = 33/1046 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K   FVHL +H+ YSL++G + +  ++  +A    PA+AITD +NLF+A++    A  
Sbjct: 1    MSKQ--FVHLHLHTDYSLIDGLVRVKPLVKAVAEAGMPAVAITDQHNLFAAVKLFNAAMQ 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PI+G  L +    + K          +    VLL    EG+  L  L+SR Y+  Q
Sbjct: 59   AGVKPILGADLRLKDPSDAK----------SSTRFVLLCMNLEGFHNLSRLLSRAYMEGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E  ++GLI L+GG  G + +A   +     +++L  +++LF DR Y+
Sbjct: 109  QLGVPMIEADWL-EGQSDGLICLSGGREGVLGKALLNHQKDEIDQQLNFWQQLFPDRFYL 167

Query: 185  NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R  ++ V LA   ++P+VA+N+  FL  + +EAH+  + +     +   
Sbjct: 168  ELIRTGREDEERFLRLAVALAGDRQIPVVASNDVRFLQPQHFEAHEAKVCIHDGRQLDDP 227

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +   YL++  +M+++F D+PEA+ENTVEIA+RC+  L +    LP F   E   
Sbjct: 228  RRPRHYSEHQYLRSAEDMIALFDDIPEAIENTVEIAKRCNLQLSLGEHYLPDFPVPEGMT 287

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            I +    E        LEV     +  +  +   Y +RL  EL+VI  M F GYFLIVAD
Sbjct: 288  IDEFFSEESFKGLAERLEVLFP-DSTQREANKDRYEERLQIELDVINSMGFPGYFLIVAD 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+S+PDFD+DF
Sbjct: 347  FIQWAKNNAVPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSLPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV   YG + V+QIITFG++ AKA LRDVGR L  PY  VD+L KL+P +
Sbjct: 407  CMDGRDRVIDYVSQHYGRDHVSQIITFGTMAAKAVLRDVGRVLGHPYGFVDQLAKLVPFE 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                ++ +A+  +   +E    +  V  L++++ +LEGL R+   HA G+VI  + L++ 
Sbjct: 467  LKMTLT-KALEQEPLLKERYNKEEEVKTLIDLALQLEGLTRNVGKHAGGVVIAPKVLTEY 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVKVD 597
             P+Y +      V+QF+   +E  GL+KFDFLGLKTLT++  +++ +      +   K+D
Sbjct: 526  TPLYCEHNGAGLVSQFDKDDVESVGLVKFDFLGLKTLTVIDWAMNNVRTLLPAEEADKID 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ +P DD  T+ LL    T  +FQLES GM++ ++ +QPD  EDIIALV+L+RPGP+ +
Sbjct: 586  ITNLPLDDKPTFDLLKRCETTAVFQLESRGMKELVKRLQPDNFEDIIALVALFRPGPLQS 645

Query: 658  IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +   + NRK+G+ K+   H  ++P+L  T GVI+YQEQVMQIAQ+L+GYSL  AD+LRR
Sbjct: 646  GMVDDFVNRKHGRAKVDYPHQDLEPVLSPTYGVIVYQEQVMQIAQILAGYSLGGADMLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM KQ++ F+ GA+   I +  A  IF+L+ KFA+YGFNKSH+AAYA+++YQ
Sbjct: 706  AMGKKKPEEMAKQRQIFLEGAAGRDIGEKEAGPIFDLMEKFAEYGFNKSHSAAYALVAYQ 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834
            TAW+K HYP  F+AA ++ +MDN +K+     + R   + + PP VN   + F V D   
Sbjct: 766  TAWLKAHYPSAFMAAVLSADMDNTDKVVGLIDECRDMKLTVQPPDVNHSKIKFTVEDGTT 825

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y L AIKGVG +    I+        F+SL DFC RVD +K+NRRV+ESLV AGALD 
Sbjct: 826  IRYGLGAIKGVGESALAGIVSEREQGEAFESLYDFCRRVDMRKINRRVMESLVKAGALDS 885

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF-SDKITLEKFSVENSSVRF 952
             G  R  L  SL    + A    +++ +   ++F     +  +D   LE  +        
Sbjct: 886  LGGHRASLEASLSKAMQIADQHRRDKDSGQNDLFGLTPDSDSADDEPLEIAAEWAEQQLL 945

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA------TIRGNNIRLAAMVVSKQQ 1006
            ++E+  LG Y SGHP+D Y+  L +   K   E  A            +  A ++V+ + 
Sbjct: 946  QSEKETLGLYLSGHPIDRYEAELAEFIPKKINELDAPESKGYQRNEKPMLTAGLIVAIRT 1005

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
             K++ G R+ ++T  + +   E   F
Sbjct: 1006 MKSKNGGRMAFITLDDQSARLEVRVF 1031


>gi|331002659|ref|ZP_08326174.1| hypothetical protein HMPREF0491_01036 [Lachnospiraceae oral taxon 107
            str. F0167]
 gi|330407072|gb|EGG86576.1| hypothetical protein HMPREF0491_01036 [Lachnospiraceae oral taxon 107
            str. F0167]
          Length = 1152

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1046 (35%), Positives = 572/1046 (54%), Gaps = 37/1046 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +  I+ +       ++AITD   ++  ++F ++A A GI+P
Sbjct: 2    SFTHLHVHTGYSLLDGSCKIKEIIRRAKELNMTSLAITDHGVMYGVIDFYKEAKANGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +      +   +          ++LL    +GY+ L ++VS+ +  +      
Sbjct: 62   ILGCEVYVSPASRFEKQAKQG---DRYYHLILLAKNNKGYENLTKIVSKGFT-EGFYYKP 117

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
            RI    L++   EG+I L+   +G I +         A K    +K LFG+   Y+ LQ 
Sbjct: 118  RIDFELLEKYH-EGIIALSACLAGEIPKLISRGRDDEARKVAKKYKDLFGEDSFYLELQN 176

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++      +V++    ++PLVATN+  +++ ED  AHD+L+ +  S  VS  DR R
Sbjct: 177  HGIPEQKFVNQVLVKIGKEFDIPLVATNDIHYINAEDAMAHDILLCIQTSKTVSDSDRMR 236

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  +LK+  EM ++F   PEA+ENT +IA  C   ++     LP +   +       
Sbjct: 237  YEGGQFFLKSEDEMKALFPYAPEAIENTAKIADMCEVEIKFGETKLPEYPVPDNM----S 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L +   +G E   +        + +D + R+ +EL VI +M +  YFLIV D+I +
Sbjct: 293  AKEYLESLCQSGFERNYSADYP----NREDIKSRMYYELGVIEKMGYIDYFLIVWDYINY 348

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I VGPGRGS AGSV +Y L ITDIDP++++L+FERFLNP+R+SMPD D+DF  +R
Sbjct: 349  ARGKGISVGPGRGSAAGSVVSYCLGITDIDPIKYNLIFERFLNPERVSMPDIDVDFADER 408

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV NKYG ERV QIITFG+LQA+  +RDVGRA+++PY++ D + K+IP D    
Sbjct: 409  RSEVIDYVVNKYGSERVCQIITFGTLQARGVIRDVGRAMEIPYARCDSIAKMIPRDKDIT 468

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A+  +   +E   +D  V  L++ S KLEGL RHAS HAAG+VI  + + + VP+ 
Sbjct: 469  LE-LALERNKELKELYDSDEVVHELIDYSLKLEGLPRHASIHAAGVVISKKAVDEYVPLA 527

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDD 605
                 D   TQF M  +E+ GL+K DFLGL+TLT+LQ +L  + +      DL+ I +DD
Sbjct: 528  LG-VDDAITTQFTMTTLEELGLLKMDFLGLRTLTVLQNTLAMVKKNYNIDLDLNNIDYDD 586

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             + Y  ++T  T  +FQLES+GM+  ++ ++P+ +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 587  KKVYEFISTGKTDAVFQLESAGMQSFMKRLKPENLEDIIAGISLYRPGPMDFIPKYIAGK 646

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N K+K+    P +  +L+ T G I+YQEQVMQI + L+GY++  +D +RRAM KK    M
Sbjct: 647  NSKDKVSYDSPQLVSILEPTYGCIVYQEQVMQIVRDLAGYTMGGSDEVRRAMSKKKAHIM 706

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            + +++ FI         G   NGI + +A  IF+ +  FA Y FNKSHAA YAVISYQTA
Sbjct: 707  EMERKNFIYGNEEKGIKGCINNGIEEQVANRIFDEMIDFASYAFNKSHAACYAVISYQTA 766

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YP EF+AAS+T   DN  K+ ++        I+I+PP VN     F V  + I +
Sbjct: 767  YLKYYYPKEFMAASLTSVSDNPAKLAEYIGSLMDMGIKILPPDVNLGEGAFSVDKDGIRF 826

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+ IKGVG   A  ++     +  + +LE+F +R+  K LN+R +ES + AGALD    
Sbjct: 827  GLSTIKGVGKAVADSLVRERTMNGKYLTLENFINRLPQKDLNKRSIESFIKAGALDGMEG 886

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFEN 954
            +R + + + +          K       + F        D     +            + 
Sbjct: 887  NRHEKILNAELFIDKKSKESKASIPGQISFFDVVSEEERDSFVSDMIHIEEYPKEELLKY 946

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------TIRGNNIRLAAMVVSKQQK 1007
            E  VLG Y SGHPL+ Y  +L K       +             G  + +  ++V   ++
Sbjct: 947  EMEVLGMYVSGHPLEEYISLLEKHCDARSIDFYPDESGNILLESGRKLAVGGLLVEVNKR 1006

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T+KG  +   T  +     E   FP
Sbjct: 1007 FTKKGDMMAICTLEDLYGRIELVIFP 1032


>gi|260902378|ref|ZP_05910773.1| DNA polymerase III, alpha subunit family protein [Vibrio
            parahaemolyticus AQ4037]
 gi|308110181|gb|EFO47721.1| DNA polymerase III, alpha subunit family protein [Vibrio
            parahaemolyticus AQ4037]
 gi|328474386|gb|EGF45191.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus 10329]
          Length = 1159

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1048 (39%), Positives = 613/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL++HS +S+++G   +  I+ K+A    PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFVHLRIHSDFSMVDGINKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG    +          Q       +  + +L +   GY+ L  L+S+ YL   
Sbjct: 60   SGVKPIIGADFKM----------QSDEFGEELTQLTVLAADNAGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  +WL E+ +EGLI+L+G  +G I +A    + ++ E  +  +K+ F DR Y+
Sbjct: 110  VQHQPVIDRAWLAEM-SEGLIVLSGAKNGDIGKALLKGNRKLVESCVEFYKQHFPDRFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        + LA  H+LP+VATN  +FLS + ++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEETYLHFAIDLAEQHDLPVVATNEVVFLSADLFDAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL+   EM  +F+D+PEALEN+VEIA+RC+  +++               
Sbjct: 229  RRPKNYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               EE   L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 284  EGMEETEFLVMKSREGLEERLEFLFPDEEERKKRRPEYDERLQIELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +       +    E   AD  V  L+++ + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLEKA-FKAEPALPELYEADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP +D  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVRIESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRATFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  + ++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYR 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  +  I Y + AIKGVG      I+EA      F  L DFC+R+D K++N+RV+E L
Sbjct: 823  FNVDENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARIDLKRVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            ++AGALD  G  R  ++ SL++  K A    +       ++F        + +    +  
Sbjct: 883  IYAGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQGDMFGVLTDAPEEVENKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ 
Sbjct: 943  PWPEKVWLEGERETLGLYLTGHPINAYLKELNKYTSCRLKDATPTRRDQSVTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|220927035|ref|YP_002502337.1| DNA polymerase III subunit alpha [Methylobacterium nodulans ORS 2060]
 gi|219951642|gb|ACL62034.1| DNA polymerase III, alpha subunit [Methylobacterium nodulans ORS
            2060]
          Length = 1158

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 513/1036 (49%), Positives = 704/1036 (67%), Gaps = 19/1036 (1%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  HSSYSLLEGAL + +++   +AD+QPA+A+TDTNNLF ALEFS+KA +AGIQPI
Sbjct: 9    FVHLHTHSSYSLLEGALKIGDLVKAASADRQPALALTDTNNLFGALEFSEKAASAGIQPI 68

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G QL +  +        G +P P    +VLL     GY  L+ L S  Y      ++ R
Sbjct: 69   AGIQLSVLFEAPEPGQRGGPSPLPN---LVLLAKDETGYGHLLRLASLAYFDGPLGEAPR 125

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            + +  L +    GLI LTGG  GP+D        + A  RL    + FG D LYV +QRH
Sbjct: 126  VPIEALTDCAP-GLIALTGGFDGPLDSCLRAARPEHAASRLARLLEAFGEDHLYVEIQRH 184

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D    E++++ LA  H LPLVATN   F   EDYEAHD L+A+A   +VS + R R+
Sbjct: 185  GLPDERTVEAELIALADRHGLPLVATNEPFFAKPEDYEAHDALLAIAEGRIVSDEKRRRL 244

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK--- 305
            TP H  K R+ MV +F DLP+AL  +VEIA RC++ ++   PILP F         +   
Sbjct: 245  TPRHDFKTRAAMVELFRDLPDALAASVEIAMRCAYRVRTRKPILPSFGLPAGHAPAQAAE 304

Query: 306  --EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              +E  EL+ +A AGL  RLAQ   A+G   QDYR RL +E+ +I +MKF GYFLIV+DF
Sbjct: 305  FLDEAGELKRQAEAGLTRRLAQAGPAEGLTEQDYRDRLAYEIGIITKMKFPGYFLIVSDF 364

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N+IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFERFLNP+R+SMPDFDIDFC
Sbjct: 365  IKWAKANDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFERFLNPERVSMPDFDIDFC 424

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
               R+ VI YVQ++YG  +VAQIITFG+L A+  LRDVGR L+MPY QVD+L KL+P +P
Sbjct: 425  VVGRERVIEYVQSRYGERQVAQIITFGTLLARGVLRDVGRVLEMPYGQVDKLTKLVPQNP 484

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A+PV+  QAI  + R + A   +P V RL+EI++KLEGL+RHASTHAAG+VIGDRPL +L
Sbjct: 485  ANPVTLAQAIEGEPRLQSAMEEEPVVARLMEIAKKLEGLHRHASTHAAGVVIGDRPLEEL 544

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+ + D L +RG+++DL+ +P
Sbjct: 545  VPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTVLRGATDLLKRRGIEIDLATLP 604

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  TY  L     +G+FQ+ES+GMR+AL  M  D  ED+IALV+LYRPGP+ NI VY 
Sbjct: 605  IDDEHTYERLRKGEVVGVFQVESAGMRKALVEMCADRFEDLIALVALYRPGPMANIPVYC 664

Query: 663  NRKNGKEK----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             RK G++     +   HP ++P+L ET G+I+YQEQVM++A++L+GYSL +AD+LRRAMG
Sbjct: 665  ERKLGRDAGNEAVWYPHPKLEPILAETFGIIVYQEQVMEVAKVLAGYSLGDADLLRRAMG 724

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KKIK EMD Q++RF+ GA + G+ +  A  IF+LLAKFADYGFNKSHAAAYA+I+YQTA+
Sbjct: 725  KKIKAEMDAQRDRFLKGAMERGLDRAKADEIFDLLAKFADYGFNKSHAAAYALITYQTAY 784

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YPVEFLAASM+ ++D+ +K+ +  QDA++ +I++ PPSVN   V F+V D  I Y+
Sbjct: 785  LKANYPVEFLAASMSQDLDDTDKLAELRQDAQRLDIKVEPPSVNRSGVTFEVHDGTIRYA 844

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            LAAIKGVG      I++A  D+PF  L DF  R++ + +N+R LESLV AGALD     R
Sbjct: 845  LAAIKGVGRAAVEAIVQARGDRPFRDLGDFARRLNPRLVNKRTLESLVGAGALDEIEPDR 904

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             +   +++ + + AQ   +       ++F     +    + +  +    ++ R + E   
Sbjct: 905  ARAFAAIEPMLRLAQGALEAEAVGMSDMFGGVAAS-DVALRIPAYEPWPAADRLKKEYEA 963

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIG 1016
            +GF+ SGHPLD Y  +L+K+ ++ + E   +   GN++ R+AA V+ + +++T+ G++IG
Sbjct: 964  VGFFLSGHPLDEYGDLLKKLRVQTWVEFCRSVRAGNSVGRVAATVLDRSERRTKTGNKIG 1023

Query: 1017 WVTFSEPAKEYEANFF 1032
             V  S+    +EA  F
Sbjct: 1024 IVNLSDQTGHFEAIVF 1039


>gi|82775574|ref|YP_401921.1| DNA polymerase III subunit alpha [Shigella dysenteriae Sd197]
 gi|81239722|gb|ABB60432.1| DNA polymerase III, alpha subunit [Shigella dysenteriae Sd197]
          Length = 1160

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1049 (40%), Positives = 621/1049 (59%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++
Sbjct: 110  GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  +M  +F+D+PEAL NTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEDMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLI
Sbjct: 284  GDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVSLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|188588146|ref|YP_001922465.1| DNA polymerase III DnaE [Clostridium botulinum E3 str. Alaska E43]
 gi|188498427|gb|ACD51563.1| DNA polymerase III subunit alpha [Clostridium botulinum E3 str.
            Alaska E43]
          Length = 1202

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1081 (35%), Positives = 596/1081 (55%), Gaps = 66/1081 (6%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             K   FVHL +H+ YSLL+G+  +  I+ K       +IAITD   L+  ++F + A   
Sbjct: 14   NKEKDFVHLHLHTGYSLLDGSGKIKEIMAKTKELGMNSIAITDHGVLYGLVDFYKAAIEY 73

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PI+GC++ +  +              +   +VLLV    GY+ L+++VS   + +  
Sbjct: 74   GIKPILGCEVYVAGKSMKIKQPDKDN---STYHLVLLVKNEIGYRNLMKIVSTASI-EGF 129

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                R+   +L +  ++G+I L+    G +       + + A++  L +K++F +  Y+ 
Sbjct: 130  YYKPRVDHEYL-KAHSDGIIALSACLGGEVQSHELKGNYEKAKETALLYKEIFKENFYLE 188

Query: 186  LQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H   ++     + ++L+    +PLVATN+  ++ ++ Y++HD+LM +     V   +
Sbjct: 189  IQNHGMDEQRKVNEENIKLSKELGIPLVATNDVHYIKKDGYKSHDILMCIQTGKTVDDVN 248

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R  +   YLK+  EM  +FS +PEALENTV+I+ +C++  + H   LP+F   E +  
Sbjct: 249  RRRYPSDQFYLKSPEEMWEMFSYIPEALENTVKISEQCNYEYKFHESKLPKFPLPEGE-- 306

Query: 304  QKEEENELRNKAVAGLEVRLAQ---------------GAIAKGYHAQDYRQRLDFELNVI 348
              E  N L+N    GL  R  +                  +K   A++   RL++EL +I
Sbjct: 307  --EPYNYLKNTCYMGLIERYEEFKEFRGKDLNYDKLDDLKSKNDSAKELIDRLEYELQII 364

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M +  YFLIV DFI++A  N IP GPGRGS AGS+ AY L IT IDP+++SL+FERFL
Sbjct: 365  KQMGYIDYFLIVWDFIKFANDNGIPTGPGRGSAAGSIIAYTLGITKIDPIKYSLIFERFL 424

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D DFC +RR EVI YV  KYG + V+QIITFG++ A+A +RDVGRA+   
Sbjct: 425  NPERVSMPDIDSDFCYERRQEVIDYVVEKYGEDNVSQIITFGTMAARACIRDVGRAMNYS 484

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            YS+VD++CK+IP      +  +A+  +   +E    D  V  L+++S+ LEGL RH+STH
Sbjct: 485  YSEVDKICKMIPTMLGITIE-KALDFNPELKEIYDKDERVKSLIDMSKDLEGLPRHSSTH 543

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAG+VI   PL Q VP+ ++   ++ VTQF M  +E+ GL+K DFLGL+TLT++ ++L  
Sbjct: 544  AAGVVIASTPLVQYVPLQKN--DEMIVTQFGMTTLEELGLLKMDFLGLRTLTVMNEALKI 601

Query: 589  LAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            + + R + +DL  I FDD E Y ++    T G+FQLES GM   ++ ++PD +EDIIA +
Sbjct: 602  IKENRNIDIDLDKIDFDDKEVYKMIGEGKTAGVFQLESPGMVSFMKELKPDSLEDIIAGI 661

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            SLYRPGP+  I  Y   K   EK+    P ++ +L  T GV++YQEQVM+I + L+GYS+
Sbjct: 662  SLYRPGPMAEIPRYIECKRNPEKVKYEAPELEEILDVTYGVMVYQEQVMEIVRKLAGYSM 721

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFIS-----------GASKNGISKTIAVNIFELLAKF 756
              +D++RRAM KK  + M+++++ FI            G  +NGIS+  A  IF+ +  F
Sbjct: 722  GRSDMVRRAMSKKKHKVMEEERKNFIHGIIENDEVIVPGCIRNGISEEAANKIFDNMMDF 781

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A Y FNKSHAAAYAV+ YQTA++  +YPVE +AA +   M + EK+  +   A +  IQ+
Sbjct: 782  ASYAFNKSHAAAYAVVGYQTAYLMKYYPVEMIAAMLNSFMGSSEKVVYYISKAEELGIQV 841

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSK 875
            +PP +N     F V    I + LAAIK VG      +++   +   FDSL DF S++D  
Sbjct: 842  LPPDINESFAKFTVKGETIRFGLAAIKNVGMNLINSVVKTRENKGKFDSLFDFISKIDLS 901

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
             +N+R +ESL+ +G  D F   R +LL   + +        K   +   ++FA +   + 
Sbjct: 902  AINKRTIESLIKSGTFDSFKIYRSKLLAVYEKMVDSISNDRKRNIDGQISLFASD-DIYV 960

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG------IKGYEESVA- 988
             +I     +  +       E+ + G Y SGHPLD Y   L+         I  + E +  
Sbjct: 961  PEIEYPNINEFDKRSLLTMEKEMTGLYISGHPLDDYAQSLKFQTSNEIGKIFSHHELLDD 1020

Query: 989  ----------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                                + + L  ++    +K TR  + + ++   +     E   F
Sbjct: 1021 NLEIQMLDDVINNESGINDNDRVILGGILTQVNKKVTRNNTIMAFLQLEDLTGTIEVIVF 1080

Query: 1033 P 1033
            P
Sbjct: 1081 P 1081


>gi|251790730|ref|YP_003005451.1| DNA polymerase III subunit alpha [Dickeya zeae Ech1591]
 gi|247539351|gb|ACT07972.1| DNA polymerase III, alpha subunit [Dickeya zeae Ech1591]
          Length = 1160

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1049 (40%), Positives = 606/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL+VHS YS+++G   +  ++ K AA   PA+AITD  NL   ++F   A +
Sbjct: 1    MAE-PRFIHLRVHSDYSMIDGLAKIGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q +     +  + +L    EGYQ L  L+SR Y    
Sbjct: 60   AGIKPIIGADFYL----------QSEELGDELAHLTVLAMNNEGYQNLTLLISRAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I  +WL E    GL++L+GG  G I +     +  + E+ +  +++ F  R Y+
Sbjct: 110  GADGPTIDRAWLVE-HQAGLLLLSGGRHGDIGKFLLRGNQALVEQCVAFYQQHFPQRFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA  H LP++ATN   F+S++D++AH++ +A+     +   
Sbjct: 169  ELTRTGRPDEESYLHAAVTLATAHGLPVIATNEVCFISQDDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEDEMCELFADIPEALINTVEIAKRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L   A  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMSTEDYLVMCAKKGLEERLAFLFPDEDVRAQRRPEYDERLDIELGVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFAAEPQLGEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K  L 
Sbjct: 523  TDFAPLYCDPEGHHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARREKQGLE 582

Query: 600  L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                  IP DD  ++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PVDIAAIPLDDKNSFGMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDIQWQHETLKPVLEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA + G+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFKEGAERMGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +KI     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKIVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA  +   F  L D C+R D KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRDLFDLCARTDIKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F     T    + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLADAMKSADQHAKAEAIGQADMFGVLAETPEQVEQSYSTVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG       +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYAGGVRLKDMHPTERGKMTTAVGLVLA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGVCTLDDRSGRLEVMLF 1031


>gi|157159649|ref|YP_001456967.1| DNA polymerase III subunit alpha [Escherichia coli HS]
 gi|191167047|ref|ZP_03028869.1| DNA polymerase III, alpha subunit [Escherichia coli B7A]
 gi|194439917|ref|ZP_03071979.1| DNA polymerase III, alpha subunit [Escherichia coli 101-1]
 gi|253774789|ref|YP_003037620.1| DNA polymerase III subunit alpha [Escherichia coli
            'BL21-Gold(DE3)pLysS AG']
 gi|254160303|ref|YP_003043411.1| DNA polymerase III subunit alpha [Escherichia coli B str. REL606]
 gi|331651089|ref|ZP_08352117.1| DNA polymerase III subunit alpha [Escherichia coli M718]
 gi|157065329|gb|ABV04584.1| DNA polymerase III, alpha subunit [Escherichia coli HS]
 gi|190902940|gb|EDV62667.1| DNA polymerase III, alpha subunit [Escherichia coli B7A]
 gi|194421163|gb|EDX37188.1| DNA polymerase III, alpha subunit [Escherichia coli 101-1]
 gi|242376015|emb|CAQ30698.1| DNA polymerase III, alpha subunit, subunit of DNA polymerase III,
            core enzyme and DNA polymerase III, holoenzyme
            [Escherichia coli BL21(DE3)]
 gi|253325833|gb|ACT30435.1| DNA polymerase III, alpha subunit [Escherichia coli
            'BL21-Gold(DE3)pLysS AG']
 gi|253972204|gb|ACT37875.1| DNA polymerase III subunit alpha [Escherichia coli B str. REL606]
 gi|253976413|gb|ACT42083.1| DNA polymerase III subunit alpha [Escherichia coli BL21(DE3)]
 gi|309700392|emb|CBI99680.1| DNA polymerase III alpha subunit [Escherichia coli ETEC H10407]
 gi|323959945|gb|EGB55592.1| DNA polymerase III [Escherichia coli H489]
 gi|331051543|gb|EGI23592.1| DNA polymerase III subunit alpha [Escherichia coli M718]
          Length = 1160

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1049 (40%), Positives = 621/1049 (59%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++
Sbjct: 110  GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLI
Sbjct: 284  GDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|153839483|ref|ZP_01992150.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus AQ3810]
 gi|149746988|gb|EDM57976.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus AQ3810]
          Length = 1159

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1048 (39%), Positives = 613/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL++HS +S+++G   +  I+ K+A    PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFVHLRIHSDFSMVDGINKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG    +          Q       +  + +L +   GY+ L  L+S+ YL   
Sbjct: 60   SGVKPIIGADFKM----------QSDEFGEELTQLTVLAADNAGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  +WL E+ +EGLI+L+G  +G I +A    + ++ E  +  +K+ F DR Y+
Sbjct: 110  VQHQPVIDRAWLAEM-SEGLIVLSGAKNGDIGKALLKGNRKLVESCVEFYKQHFPDRFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        + LA  H+LP+VATN  +FLS + ++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEETYLHFAIDLAEQHDLPVVATNEVVFLSADLFDAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL+   EM  +F+D+PEALEN+VEIA+RC+  +++               
Sbjct: 229  RRPKNYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               EE   L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 284  EGMEETEFLVMKSREGLEERLEFLFPNEEERKKRRPEYDERLQIELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +       +    E   AD  V  L+++ + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLEKA-FKAEPALPELYEADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP +D  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVRIESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRATFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  + ++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYR 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  +  I Y + AIKGVG      I+EA      F  L DFC+R+D K++N+RV+E L
Sbjct: 823  FNVDENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARIDLKRVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            ++AGALD  G  R  ++ SL++  K A    +       ++F        + +    +  
Sbjct: 883  IYAGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQGDMFGVLTDAPEEVENKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ 
Sbjct: 943  PWPEKVWLEGERETLGLYLTGHPINAYLKELNKYTSCRLKDATPTRRDQSVTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|16128177|ref|NP_414726.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr.
            MG1655]
 gi|89107064|ref|AP_000844.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr.
            W3110]
 gi|157158983|ref|YP_001461353.1| DNA polymerase III subunit alpha [Escherichia coli E24377A]
 gi|170079820|ref|YP_001729140.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr.
            DH10B]
 gi|188493055|ref|ZP_03000325.1| DNA polymerase III, alpha subunit [Escherichia coli 53638]
 gi|193063148|ref|ZP_03044239.1| DNA polymerase III, alpha subunit [Escherichia coli E22]
 gi|209917374|ref|YP_002291458.1| DNA polymerase III subunit alpha [Escherichia coli SE11]
 gi|218552765|ref|YP_002385678.1| DNA polymerase III subunit alpha [Escherichia coli IAI1]
 gi|218693649|ref|YP_002401316.1| DNA polymerase III subunit alpha [Escherichia coli 55989]
 gi|238899582|ref|YP_002925378.1| DNA polymerase III alpha subunit [Escherichia coli BW2952]
 gi|256021616|ref|ZP_05435481.1| DNA polymerase III subunit alpha [Shigella sp. D9]
 gi|256025496|ref|ZP_05439361.1| DNA polymerase III subunit alpha [Escherichia sp. 4_1_40B]
 gi|260842416|ref|YP_003220194.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O103:H2 str.
            12009]
 gi|293418069|ref|ZP_06660691.1| DNA polymerase III subunit alpha [Escherichia coli B185]
 gi|307136784|ref|ZP_07496140.1| DNA polymerase III subunit alpha [Escherichia coli H736]
 gi|307311368|ref|ZP_07591010.1| DNA polymerase III, alpha subunit [Escherichia coli W]
 gi|331640638|ref|ZP_08341786.1| DNA polymerase III subunit alpha [Escherichia coli H736]
 gi|331666425|ref|ZP_08367306.1| DNA polymerase III subunit alpha [Escherichia coli TA271]
 gi|331680763|ref|ZP_08381422.1| DNA polymerase III subunit alpha [Escherichia coli H591]
 gi|118794|sp|P10443|DPO3A_ECOLI RecName: Full=DNA polymerase III subunit alpha
 gi|146663|gb|AAC36920.1| DNA polymerase III holoenzyme, alpha subunit [Escherichia coli]
 gi|1552761|gb|AAB08613.1| DNA polymerase III alpha chain [Escherichia coli]
 gi|1786381|gb|AAC73295.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr.
            MG1655]
 gi|4902925|dbj|BAA77859.1| DNA polymerase III alpha subunit [Escherichia coli str. K12 substr.
            W3110]
 gi|157081013|gb|ABV20721.1| DNA polymerase III, alpha subunit [Escherichia coli E24377A]
 gi|169887655|gb|ACB01362.1| DNA polymerase III alpha subunit [Escherichia coli str. K-12 substr.
            DH10B]
 gi|188488254|gb|EDU63357.1| DNA polymerase III, alpha subunit [Escherichia coli 53638]
 gi|192931056|gb|EDV83659.1| DNA polymerase III, alpha subunit [Escherichia coli E22]
 gi|209910633|dbj|BAG75707.1| DNA polymerase III alpha subunit [Escherichia coli SE11]
 gi|218350381|emb|CAU96064.1| DNA polymerase III alpha subunit [Escherichia coli 55989]
 gi|218359533|emb|CAQ97071.1| DNA polymerase III alpha subunit [Escherichia coli IAI1]
 gi|238860829|gb|ACR62827.1| DNA polymerase III alpha subunit [Escherichia coli BW2952]
 gi|257757563|dbj|BAI29060.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O103:H2 str.
            12009]
 gi|260450613|gb|ACX41035.1| DNA polymerase III, alpha subunit [Escherichia coli DH1]
 gi|291430787|gb|EFF03785.1| DNA polymerase III subunit alpha [Escherichia coli B185]
 gi|306908347|gb|EFN38845.1| DNA polymerase III, alpha subunit [Escherichia coli W]
 gi|315059402|gb|ADT73729.1| DNA polymerase III alpha subunit [Escherichia coli W]
 gi|315134874|dbj|BAJ42033.1| DNA polymerase III subunit alpha [Escherichia coli DH1]
 gi|320200290|gb|EFW74876.1| DNA polymerase III alpha subunit [Escherichia coli EC4100B]
 gi|323380039|gb|ADX52307.1| DNA polymerase III, alpha subunit [Escherichia coli KO11]
 gi|323939940|gb|EGB36138.1| DNA polymerase III [Escherichia coli E482]
 gi|323945661|gb|EGB41710.1| DNA polymerase III [Escherichia coli H120]
 gi|323970663|gb|EGB65919.1| DNA polymerase III [Escherichia coli TA007]
 gi|324118304|gb|EGC12199.1| DNA polymerase III [Escherichia coli E1167]
 gi|331040384|gb|EGI12591.1| DNA polymerase III subunit alpha [Escherichia coli H736]
 gi|331066636|gb|EGI38513.1| DNA polymerase III subunit alpha [Escherichia coli TA271]
 gi|331072226|gb|EGI43562.1| DNA polymerase III subunit alpha [Escherichia coli H591]
 gi|332105210|gb|EGJ08556.1| DNA polymerase subunit III alpha [Shigella sp. D9]
          Length = 1160

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1049 (40%), Positives = 621/1049 (59%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++
Sbjct: 110  GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLI
Sbjct: 284  GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|307129835|ref|YP_003881851.1| DNA polymerase III subunit alpha [Dickeya dadantii 3937]
 gi|306527364|gb|ADM97294.1| DNA polymerase III alpha subunit [Dickeya dadantii 3937]
          Length = 1160

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1049 (39%), Positives = 607/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F   A  
Sbjct: 1    MAE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q +     +  + +L    EGYQ L  L+SR Y    
Sbjct: 60   AGIKPIIGADFYL----------QSEELGDELAHLTILAMNNEGYQNLTLLISRAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I  +WL E    GL++L+GG  G I +     +  + E+ +  +++ F  R Y+
Sbjct: 110  GADGPTIDRAWLVE-HQAGLLLLSGGRHGDIGKFLLRGNQVLVEQSVAFYQQHFPQRFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA  H LP+VATN+  F+S++D+EAH++ +A+     +   
Sbjct: 169  ELVRTGRPDEESYLHAAVELATAHGLPVVATNDVCFISQDDFEAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPKNYSVQQYMRSEEEMCELFADIPEALINTVEIAKRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L   +  GLE     L      +     +Y +RL+ ELNVI +M F GYFLI
Sbjct: 284  GDMSTEDYLVMCSKKGLEERLTFLFPDEEVRAQRRPEYDERLEIELNVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDLVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFAAEPQLGEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K +L 
Sbjct: 523  TDFAPLYCDPEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKQELE 582

Query: 600  L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                  IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDIEWQHETLKPVLEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA   G+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFKEGAETMGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +KI     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKIVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA  +   F  L D C+R D KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNNDGYFRDLFDLCARTDIKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+ SL +  K A+   K       ++F     T    + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLADAMKSAEQHAKAEAIGQADMFGVLAETPEQVEQSYSTVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG       +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYAGGVRLKDMHPTERGKMTTAVGLVLA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGVCTLDDRSGRLEVMLF 1031


>gi|281177409|dbj|BAI53739.1| DNA polymerase III alpha subunit [Escherichia coli SE15]
          Length = 1160

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/1049 (40%), Positives = 622/1049 (59%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++
Sbjct: 110  GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA +  LP+VATN+  F+   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEESYLHAAVELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  +A  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|320173335|gb|EFW48538.1| DNA polymerase III alpha subunit [Shigella dysenteriae CDC 74-1112]
          Length = 1160

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1049 (40%), Positives = 621/1049 (59%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++
Sbjct: 110  GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLI
Sbjct: 284  GDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ +KA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMASKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|331268630|ref|YP_004395122.1| DNA polymerase III subunit alpha [Clostridium botulinum BKT015925]
 gi|329125180|gb|AEB75125.1| DNA polymerase III, alpha subunit [Clostridium botulinum BKT015925]
          Length = 1168

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1061 (35%), Positives = 591/1061 (55%), Gaps = 57/1061 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YSLL+G+  +  ++ +       ++AITD   +F  ++F +KA  AGI+PI
Sbjct: 8    FVHLHTHTEYSLLDGSGKIGGLISRAKELGMKSLAITDHGTMFGCVDFYKKAKEAGIKPI 67

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +            +        +VLLV   +GY+ L+++VS+  + D      R
Sbjct: 68   IGCEIYVASNSMHIKRLDSENR---NHHLVLLVKNEQGYKNLMKIVSKAAI-DGFYYKPR 123

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   +L+E  +EGLI L+   +G +       +   A +  L +K +F +  Y+ LQ H 
Sbjct: 124  VDHEYLKE-HSEGLIALSACLAGEVSYNLLNGTKDKAREVALFYKDIFKEGFYIELQYHG 182

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               + R    +V+LA   ++PLVATN+  ++ +ED ++H+VL+ +     +  +DR R  
Sbjct: 183  IDKQLRVNEMLVELARELDIPLVATNDVHYIKKEDAKSHEVLLCIQTGKTLDDEDRMRYE 242

Query: 250  PD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P   YLK+  EM   FS + EALENT +IA  C+F    H   LP F   E  D      
Sbjct: 243  PQKFYLKSPEEMYETFSYVSEALENTNKIADECNFDYVFHESKLPNFPLPEGAD----HF 298

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              ++     GLE       +       + ++RL++EL VI +M +  YFLIV DF +++ 
Sbjct: 299  EYMKELCYKGLE-------VRYLEVTDELKERLEYELGVIKQMGYVDYFLIVWDFFRFSH 351

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ AY L IT IDP++++L+FERFLNP+R+SMPD D DFC +RR 
Sbjct: 352  EKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNPERVSMPDIDSDFCYERRG 411

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV  KYG E V+QI+TFG++  +A +RDVGRA+   Y++VDR+ K+IP      + 
Sbjct: 412  EVIDYVVEKYGKENVSQIVTFGTMAPRACIRDVGRAMNYSYAEVDRIAKMIPTVLGITID 471

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+  +   +E    D  +  L+++++ LEGL RH STHAAG+VI  +PL   VP+ ++
Sbjct: 472  -KALEMNPELKEVYDKDMRIKELIDVARDLEGLPRHTSTHAAGVVIASQPLVSYVPLSKN 530

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
               +  VTQF M  +E+ GL+K DFLGL+TLT+++ +++ + +    K+DL  I F+D  
Sbjct: 531  --EEAIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDAIELIKKNTGTKIDLDKINFEDEN 588

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
             Y++L    T+G+FQLES+GM   ++ ++P+ +EDIIA +SLYRPGP+  I  Y   KN 
Sbjct: 589  VYNMLGRGKTVGVFQLESAGMTNFMKELKPESLEDIIAGISLYRPGPMAEIPKYIKNKNN 648

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             + I  I P ++ +L  T GV++YQEQVMQI + L+GYS+  +D++RRAM KK  + M++
Sbjct: 649  PKNIEYITPKLEGILNVTYGVMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHKVMEE 708

Query: 728  QKERFIS-----------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            +++ FI            G  +NGIS+  A  I++ +  FA Y FNKSHAAAYAV++Y T
Sbjct: 709  ERKNFIYGIEEDGKVVVPGCLRNGISEDAANKIYDQMMDFASYAFNKSHAAAYAVVAYYT 768

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++  +YP EF+AA +     N +K+  + + A+Q +I+ +PP +N     F V + +I 
Sbjct: 769  AYLVHYYPTEFMAAMLNSVRGNSDKVAIYIRAAKQMDIETLPPDINKSFGKFTVQNGKIR 828

Query: 837  YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            + L+AIK VG      I+++  +   F+S  DFC+++    +N+R++ESL+ AG  DCFG
Sbjct: 829  FGLSAIKNVGENIIDVIVKSREEKGEFNSFVDFCNKISMGSINKRMVESLIKAGVFDCFG 888

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFEN 954
              R QLL   + I        K       ++F      F D +I        N   +   
Sbjct: 889  IYRSQLLAVYEKIIDSVVNQRKKNIEGQVSLFGSFDNEFKDTEIKYPAIDEFNKKSKLAM 948

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV----------------------ATIRG 992
            E+ + G Y +GHPL+ Y+ IL+        + +                          G
Sbjct: 949  EKEMTGLYLTGHPLEDYEEILKNATSAKTTDIIIDESLEENLIDEVSLHVEEQNSKIKDG 1008

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + + +  ++ +  +K T+  S + ++T  +     E   FP
Sbjct: 1009 DKVIIGGLITNVTRKITKTNSMMAFITLEDLYSSIEVIIFP 1049


>gi|170021463|ref|YP_001726417.1| DNA polymerase III subunit alpha [Escherichia coli ATCC 8739]
 gi|169756391|gb|ACA79090.1| DNA polymerase III, alpha subunit [Escherichia coli ATCC 8739]
          Length = 1160

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1049 (40%), Positives = 621/1049 (59%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++
Sbjct: 110  GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLI
Sbjct: 284  GDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD++I +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKRDQLIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|110640403|ref|YP_668131.1| DNA polymerase III subunit alpha [Escherichia coli 536]
 gi|110341995|gb|ABG68232.1| DNA polymerase III alpha subunit [Escherichia coli 536]
          Length = 1160

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1049 (40%), Positives = 621/1049 (59%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++
Sbjct: 110  GTAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  +A  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++R++VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKREQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|74310804|ref|YP_309223.1| DNA polymerase III subunit alpha [Shigella sonnei Ss046]
 gi|73854281|gb|AAZ86988.1| DNA polymerase III alpha subunit [Shigella sonnei Ss046]
          Length = 1160

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 286  MSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|293476841|ref|ZP_06665249.1| DNA polymerase III subunit alpha [Escherichia coli B088]
 gi|291321294|gb|EFE60736.1| DNA polymerase III subunit alpha [Escherichia coli B088]
          Length = 1162

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 4    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 63

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 64   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 113

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 114  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 172

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 173  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 232

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +     
Sbjct: 233  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 287

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 288  MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 348  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 408  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 467

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 468  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 526

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      
Sbjct: 527  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 586

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 587  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 646

Query: 657  NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 647  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 706

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 707  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 766

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 767  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 826

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 827  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 886

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 887  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 946

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 947  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1006

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1007 VMVTKRGNRIGICTLDDRSGRLEVMLF 1033


>gi|291281006|ref|YP_003497824.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str.
            CB9615]
 gi|209745710|gb|ACI71162.1| DNA polymerase III alpha subunit [Escherichia coli]
 gi|290760879|gb|ADD54840.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str.
            CB9615]
 gi|320663614|gb|EFX30898.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str. USDA
            5905]
          Length = 1160

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGN 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 286  MSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|293408276|ref|ZP_06652116.1| DNA polymerase III subunit alpha [Escherichia coli B354]
 gi|291472527|gb|EFF15009.1| DNA polymerase III subunit alpha [Escherichia coli B354]
          Length = 1162

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 4    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 63

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 64   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 113

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 114  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 172

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 173  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 232

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +     
Sbjct: 233  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 287

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 288  MSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 348  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 408  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 467

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 468  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 526

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      
Sbjct: 527  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 586

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 587  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 646

Query: 657  NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 647  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 706

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 707  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 766

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 767  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 826

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 827  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 886

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 887  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 946

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 947  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1006

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1007 VMVTKRGNRIGICTLDDRSGRLEVMLF 1033


>gi|260853394|ref|YP_003227285.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O26:H11 str.
            11368]
 gi|257752043|dbj|BAI23545.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O26:H11 str.
            11368]
          Length = 1160

 Score =  794 bits (2050), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1047 (40%), Positives = 618/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +  + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNRALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 286  MSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|254037603|ref|ZP_04871680.1| DNA polymerase III alpha subunit [Escherichia sp. 1_1_43]
 gi|226840709|gb|EEH72711.1| DNA polymerase III alpha subunit [Escherichia sp. 1_1_43]
          Length = 1160

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1047 (40%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 286  MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V  + +RK+G+E+I        H ++ P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHEILKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|332160607|ref|YP_004297184.1| DNA polymerase III subunit alpha [Yersinia enterocolitica subsp.
            palearctica 105.5R(r)]
 gi|325664837|gb|ADZ41481.1| DNA polymerase III subunit alpha [Yersinia enterocolitica subsp.
            palearctica 105.5R(r)]
          Length = 1171

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1049 (39%), Positives = 603/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A +
Sbjct: 12   MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHS 70

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG    +          Q +     +  + +L    +GYQ L  L+S  Y    
Sbjct: 71   AGVKPIIGADFYV----------QSEILGDELAHLTVLARNNKGYQNLTLLISEAYQRGY 120

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL +   EGLI+L+GG  G + +     +    E+ L  +++ F D  Y+
Sbjct: 121  GAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGKFILRGNHAQVEQCLEFYQEHFPDSYYL 179

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  F+ E D++AH++ +A+     +   
Sbjct: 180  ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 239

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 240  KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 294

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL          AQ    Y +RL+ EL VI +M F GYFLI
Sbjct: 295  GDMSTEDFLVEKSKQGLEERLEFLFPDPEVRAQKRPAYDERLEIELKVINQMGFPGYFLI 354

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 355  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 414

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 415  VDFCMEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 474

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 475  PPDPGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 533

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R       
Sbjct: 534  TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 593

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 594  PIDIASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 653

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL
Sbjct: 654  LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 713

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 714  GGADMLRRAMGKKNPAEMAKQRSIFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSA 773

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    
Sbjct: 774  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 833

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+LE L
Sbjct: 834  FHVNDEGEIVYGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKL 893

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+ SL    K A    K       ++F          + +     
Sbjct: 894  IMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVP 953

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 +  + E+  LG Y +GHP+  Y   + +  G    ++   T RG     A +V++
Sbjct: 954  PWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIA 1013

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1014 ARIMVTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|15799866|ref|NP_285878.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 EDL933]
 gi|15829440|ref|NP_308213.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
            Sakai]
 gi|168752166|ref|ZP_02777188.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4113]
 gi|168758707|ref|ZP_02783714.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4401]
 gi|168764953|ref|ZP_02789960.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4501]
 gi|168769951|ref|ZP_02794958.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4486]
 gi|168777708|ref|ZP_02802715.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4196]
 gi|168782076|ref|ZP_02807083.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4076]
 gi|168789293|ref|ZP_02814300.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC869]
 gi|168802470|ref|ZP_02827477.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC508]
 gi|195939880|ref|ZP_03085262.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
            EC4024]
 gi|208806614|ref|ZP_03248951.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4206]
 gi|208812760|ref|ZP_03254089.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4045]
 gi|208820436|ref|ZP_03260756.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4042]
 gi|209398477|ref|YP_002268792.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4115]
 gi|217326041|ref|ZP_03442125.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            TW14588]
 gi|254791317|ref|YP_003076154.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
            TW14359]
 gi|261226938|ref|ZP_05941219.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str.
            FRIK2000]
 gi|261255342|ref|ZP_05947875.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str.
            FRIK966]
 gi|81848972|sp|Q8X8X5|DPO3A_ECO57 RecName: Full=DNA polymerase III subunit alpha
 gi|12512912|gb|AAG54486.1|AE005194_7 DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EDL933]
 gi|13359642|dbj|BAB33609.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str.
            Sakai]
 gi|187767109|gb|EDU30953.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4196]
 gi|188013925|gb|EDU52047.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4113]
 gi|189000426|gb|EDU69412.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4076]
 gi|189354514|gb|EDU72933.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4401]
 gi|189361079|gb|EDU79498.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4486]
 gi|189365137|gb|EDU83553.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4501]
 gi|189371108|gb|EDU89524.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC869]
 gi|189375552|gb|EDU93968.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC508]
 gi|208726415|gb|EDZ76016.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4206]
 gi|208734037|gb|EDZ82724.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4045]
 gi|208740559|gb|EDZ88241.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4042]
 gi|209159877|gb|ACI37310.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            EC4115]
 gi|209745704|gb|ACI71159.1| DNA polymerase III alpha subunit [Escherichia coli]
 gi|209745706|gb|ACI71160.1| DNA polymerase III alpha subunit [Escherichia coli]
 gi|209745708|gb|ACI71161.1| DNA polymerase III alpha subunit [Escherichia coli]
 gi|209745712|gb|ACI71163.1| DNA polymerase III alpha subunit [Escherichia coli]
 gi|217322262|gb|EEC30686.1| DNA polymerase III, alpha subunit [Escherichia coli O157:H7 str.
            TW14588]
 gi|254590717|gb|ACT70078.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str.
            TW14359]
 gi|320190290|gb|EFW64940.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str.
            EC1212]
 gi|320644760|gb|EFX13804.1| DNA polymerase III subunit alpha [Escherichia coli O157:H- str.
            493-89]
 gi|320652916|gb|EFX21154.1| DNA polymerase III subunit alpha [Escherichia coli O157:H- str. H
            2687]
 gi|320658304|gb|EFX26033.1| DNA polymerase III subunit alpha [Escherichia coli O55:H7 str.
            3256-97 TW 07815]
 gi|320668927|gb|EFX35722.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
            LSU-61]
 gi|326339761|gb|EGD63569.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. 1044]
 gi|326345095|gb|EGD68838.1| DNA polymerase III alpha subunit [Escherichia coli O157:H7 str. 1125]
          Length = 1160

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 286  MSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|260866333|ref|YP_003232735.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O111:H- str.
            11128]
 gi|257762689|dbj|BAI34184.1| DNA polymerase III, alpha subunit DnaE [Escherichia coli O111:H- str.
            11128]
          Length = 1160

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1049 (40%), Positives = 621/1049 (59%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++
Sbjct: 110  GVAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLI
Sbjct: 284  GDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|123443470|ref|YP_001007443.1| DNA polymerase III subunit alpha [Yersinia enterocolitica subsp.
            enterocolitica 8081]
 gi|122090431|emb|CAL13299.1| DNA polymerase III, alpha chain [Yersinia enterocolitica subsp.
            enterocolitica 8081]
          Length = 1171

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1049 (39%), Positives = 603/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A +
Sbjct: 12   MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHS 70

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    
Sbjct: 71   AGVKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY 120

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL +   EGLI+L+GG  G + +     +    ++ L  +++ F D  Y+
Sbjct: 121  GAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGKFILRGNHAQVDQCLEFYQEHFPDSYYL 179

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  F+ E D++AH++ +A+     +   
Sbjct: 180  ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 239

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 240  KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 294

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL          AQ    Y +RL+ EL VI +M F GYFLI
Sbjct: 295  GDMSTEDFLVEKSKQGLEERLEFLFPDPEVRAQKRPAYDERLEIELKVINQMGFPGYFLI 354

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 355  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 414

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 415  VDFCMEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 474

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 475  PPDPGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 533

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R       
Sbjct: 534  TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 593

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 594  PIDIASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 653

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL
Sbjct: 654  LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 713

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 714  GGADMLRRAMGKKNPAEMAKQRSIFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSA 773

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    
Sbjct: 774  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 833

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+LE L
Sbjct: 834  FHVNDEGEIVYGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKL 893

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+ SL    K A    K       ++F          + +     
Sbjct: 894  IMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVP 953

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 +  + E+  LG Y +GHP+  Y   + +  G    ++   T RG     A +V++
Sbjct: 954  PWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIA 1013

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1014 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|194428253|ref|ZP_03060795.1| DNA polymerase III, alpha subunit [Escherichia coli B171]
 gi|194413628|gb|EDX29908.1| DNA polymerase III, alpha subunit [Escherichia coli B171]
          Length = 1160

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 286  MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEATYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|262197244|ref|YP_003268453.1| DNA polymerase III subunit alpha [Haliangium ochraceum DSM 14365]
 gi|262080591|gb|ACY16560.1| DNA polymerase III, alpha subunit [Haliangium ochraceum DSM 14365]
          Length = 1174

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1058 (38%), Positives = 607/1058 (57%), Gaps = 46/1058 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
             +F HL +H+ YSLL+GA+ + ++  K+      ++A+TD  N+F A++    A   G++
Sbjct: 2    SAFTHLHLHTQYSLLDGAIRVKDLFPKVLELGMDSVAVTDHGNMFGAVDLYTAAREHGVK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I GC+  I   D    TN+          +VLL     GY+ L  L S  YL +    +
Sbjct: 62   MIFGCETYIAASDRFDRTNR------RSYHMVLLAKDQVGYKNLSFLNSMGYL-EGFYYN 114

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
             RI    L+E  +EGLI ++    G + +      +  AE   L ++ +FG    Y+ + 
Sbjct: 115  PRIDKKILRE-HSEGLIGMSACLGGEVAQTLLKQGTAEAEAVALEYQDIFGKGNFYLEMM 173

Query: 188  RHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             ++  + +   + + +++    +PLVATN+  ++S++D  AH++L+++      S   R 
Sbjct: 174  GNQLEEQQQLNADLKRMSRKLGIPLVATNDCHYVSQQDAHAHEILLSIQTGKTTSDDKRL 233

Query: 247  RVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R T   ++LKN +EM   FSD+PEA+ENTV+IARRC+  L +    LP +   E   +  
Sbjct: 234  RHTVDSYFLKNAAEMEVDFSDVPEAMENTVDIARRCNVELDLGNTFLPNYKVPEGMSV-- 291

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              E+ L      GLE R  + +          YR+RL  EL VI +M F GYFLIV DFI
Sbjct: 292  --ESYLEKVVFDGLERRFRELSEIGRSFDPDQYRERLRHELGVINKMGFPGYFLIVWDFI 349

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAK++NIPVGPGRGSGAGS  A+A+ ITDIDPL F LLFERFLNP+R+SMPDFD+DFC 
Sbjct: 350  NWAKEHNIPVGPGRGSGAGSCVAWAMRITDIDPLEFKLLFERFLNPERVSMPDFDVDFCM 409

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RRDEVI YV+ KYG + V QI TF  L+A+  +RD+ R +++PY++ D+L KL+P+   
Sbjct: 410  NRRDEVIDYVKRKYGEKNVGQIATFHQLKARGVIRDIARVMELPYAEADKLAKLVPDPVG 469

Query: 485  HPVSLQA--IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                     I  +   +     DP +  LL+++  LEGL RH   HAAG+VI + PL + 
Sbjct: 470  GKSPPVRDAIEQEPELKRLYNEDPKMRDLLDVAASLEGLNRHVGMHAAGVVIAEDPLWEY 529

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVD 597
            VP +R  ++   VTQF MK  EKAGL+KFDFLGLKTLT++  ++  + ++         D
Sbjct: 530  VPCFRG-QNGEIVTQFAMKEAEKAGLVKFDFLGLKTLTVIHTAVRLINEQREAAGEPLFD 588

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID- 656
            +  I   D   Y +++   T G+FQLESSG R+ L  ++PD +EDI+A V+LYRPGP++ 
Sbjct: 589  IDKIDKGDPAVYKMISRGDTTGVFQLESSGFREILTKLKPDQLEDIVAAVALYRPGPLEG 648

Query: 657  -NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              +  +  RK+G++++   HP ++P+L++T GVI+YQEQVMQIAQ+L+GYSL  AD+LRR
Sbjct: 649  GMVDDFIERKHGRKRVEYPHPDLEPVLRDTYGVIVYQEQVMQIAQVLAGYSLGRADLLRR 708

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK K+ M K+K+ F++GA++ G+   +A  +F+L+A FA YGFN+SH+AAY  ISYQ
Sbjct: 709  AMGKKNKDVMAKEKDGFVTGATERGVDSKLAEQVFDLMAFFAGYGFNRSHSAAYGWISYQ 768

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----- 830
            TA++K HYP EF+A  M+ + DN + I KF  +AR   + +  P VN    DF V     
Sbjct: 769  TAYLKHHYPHEFMAGLMSCDQDNTDNIVKFIAEARAMGLVVARPDVNESAADFTVVVGED 828

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
               RI + L A+KGVG      I+E    D+ F S+ +FC RVDS+K NRRV+E+LV +G
Sbjct: 829  DTKRIRFGLGAVKGVGQGAVEAIIECRNQDEKFISIYEFCRRVDSQKCNRRVIEALVKSG 888

Query: 890  ALDCF----GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--------K 937
            A D      G  R ++  +++   +     +++R +   ++F        D         
Sbjct: 889  AFDGLSEDAGLHRARVFATIEAAMESGAQAQRDRRSGQTSLFGLIAAPEGDSGATADGMP 948

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR 996
             T  +     +      E+  LGFY SGHPLD Y+  L +       +            
Sbjct: 949  ETYPEVEEWPAKELLAFEKESLGFYISGHPLDRYRADLTRYANATTTDFLEGKRPAGPAA 1008

Query: 997  LAAMVVSKQQKKTRKGS-RIGWVTFSEPAKEYEANFFP 1033
            +  +V + +++ TRKG  +I +    +   + E   FP
Sbjct: 1009 VGGVVSAYRERPTRKGDGKIAFFQLEDATGQLEVIVFP 1046


>gi|218698604|ref|YP_002406233.1| DNA polymerase III subunit alpha [Escherichia coli IAI39]
 gi|218368590|emb|CAR16327.1| DNA polymerase III alpha subunit [Escherichia coli IAI39]
          Length = 1160

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 286  MSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGIRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|188996572|ref|YP_001930823.1| DNA polymerase III, alpha subunit [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931639|gb|ACD66269.1| DNA polymerase III, alpha subunit [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 1165

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1044 (35%), Positives = 573/1044 (54%), Gaps = 26/1044 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +HS YSLL+G +    +  K       A+ +TD  N+F A+EF ++    G++P
Sbjct: 4    DFVHLHLHSHYSLLDGMIKPKELAKKAVEYGYKAVGLTDHGNIFGAVEFYEEMRKVGVKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            +IG +         K               ++L      G++ L++L S  Y  +     
Sbjct: 64   LIGMESYFTNNRFEKKGEGSDDILTDKNYHLILFAKDKTGFKNLMKLSSIAYT-EGFYYK 122

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L++   EGLI  T    G +         + A+K     K +FG+ LY  +Q 
Sbjct: 123  PRIDWELLEKYH-EGLICQTACLKGFVPNLLAQGKYEEAKKYAKRLKDIFGEDLYFEIQV 181

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV---SQKD 244
            +   ++      +++LA    + +V TN+S +L+ ED+ AHDV+ A+     +     + 
Sbjct: 182  NGLEEQNIANEGIIRLAKELGVKVVGTNDSHYLNPEDHTAHDVVKALQMKKTLKELYSEG 241

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            +       +     EM   F    E L+NT+EIA +C+  +            K      
Sbjct: 242  KAFRVKGLHFTRPEEMYEKFKGYEEYLKNTMEIAEKCNLEIDTAETRGY-LFPKFETPEG 300

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                      A  GLE RL           ++YR+RLD+E+NVI +M F+ YFLIV DFI
Sbjct: 301  MTPAQYFEKLAREGLEKRLESIKDLTPEKLKEYRERLDYEINVINQMGFAEYFLIVQDFI 360

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +AKKN IPVGPGRGS  GS+ AY L IT++DPL+  LLFERFLNPDR+SMPD D+DFC 
Sbjct: 361  NYAKKNGIPVGPGRGSAGGSLVAYCLRITEVDPLKHGLLFERFLNPDRISMPDIDVDFCM 420

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP- 483
            +RR++VI YV+ KYG + VAQIITF  +++K  +RDV R L  PY + D++ K+I   P 
Sbjct: 421  ERREKVIDYVKQKYGEDSVAQIITFNFMKSKMVIRDVARTLGFPYQEADKIAKMILPGPI 480

Query: 484  -AHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                +++   +     F++    D  V  LL++++KLEG  RH   HAAGIVI    L +
Sbjct: 481  QGSTLTIDENLEAHPDFKKLYETDEKVRELLDLARKLEGSARHTGIHAAGIVIAPGTLDE 540

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
             VP+YRD +     TQF MK +E+ GL+K DFLGLKTLT L      + +R  + VD + 
Sbjct: 541  YVPVYRD-KDGNRATQFEMKTLEQLGLVKMDFLGLKTLTELDYMKKLIKERHGIDVDYNS 599

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +PFDD   + LL +  T G+FQLES GM+  L  ++P  +++IIA+++L+RPGP+ + +V
Sbjct: 600  LPFDDENVFKLLQSGRTTGVFQLESKGMQDLLVRLKPSNLDEIIAILALFRPGPLMSGMV 659

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  RK+G++ I      +  +LKET G+I+YQEQ+M ++ +LSG++++EAD LR+A+G
Sbjct: 660  DEYIERKHGRKPIEYPFEEVKDILKETYGLIVYQEQIMFMSNILSGFTMAEADTLRKAIG 719

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  E M K K+RFI GA + G SK     +++ + KFA Y FNKSH+ AYA ++Y TAW
Sbjct: 720  KKNPEVMAKMKDRFIGGAVERGFSKEKVEKLWDDIEKFASYSFNKSHSTAYAYLTYWTAW 779

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYY 837
            +KT+YP EF A  ++ E ++ + +     D   FNI+++PP VN    +F + +  +I +
Sbjct: 780  VKTYYPEEFFAVKLSTENNDSKFLNLLL-DMENFNIKLLPPDVNKSMPEFAIEEKSKIRF 838

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L+ IKG+G   A+ I+E   + PF  + DFC R D+K  N++VLESL+ AGA D  G  
Sbjct: 839  GLSRIKGIGEEVAKSIVEERKNGPFVDIFDFCERFDTKVANKKVLESLIKAGAFDFEGID 898

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFENEQ 956
            R  LL++++      Q    +++    ++FA       + K   E  +      +   E+
Sbjct: 899  RGILLENVEKAITTGQKARDSKSAGQNSLFALTTTPVVNVKHIYEDGTKLTEKEKLRLEK 958

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-------RGNNIRLAAMVVSKQQKKT 1009
             VLGFY SGHPL+ YK  L+   +    E + +         G+ +++A ++   + KKT
Sbjct: 959  EVLGFYLSGHPLNAYKNELKNK-VLKISEIMESAFGDKTFQSGSKVKIAGVIDEIKYKKT 1017

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
            + G+ +     S+   + +   FP
Sbjct: 1018 KSGATMIVFQISDETGQMDVRAFP 1041


>gi|193067721|ref|ZP_03048688.1| DNA polymerase III, alpha subunit [Escherichia coli E110019]
 gi|192959133|gb|EDV89569.1| DNA polymerase III, alpha subunit [Escherichia coli E110019]
          Length = 1160

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 286  MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHENLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|170682325|ref|YP_001742312.1| DNA polymerase III subunit alpha [Escherichia coli SMS-3-5]
 gi|170520043|gb|ACB18221.1| DNA polymerase III, alpha subunit [Escherichia coli SMS-3-5]
          Length = 1160

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1049 (40%), Positives = 622/1049 (59%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++
Sbjct: 110  GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA +  LP+VATN+  F+   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEESYLHAAVELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLI
Sbjct: 284  GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGIRLKDMHPTERGKVITAAGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|167628221|ref|YP_001678720.1| DNA polymerase iii alpha subunit, putative [Heliobacterium
            modesticaldum Ice1]
 gi|167590961|gb|ABZ82709.1| DNA polymerase iii alpha subunit, putative [Heliobacterium
            modesticaldum Ice1]
          Length = 1208

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1078 (35%), Positives = 583/1078 (54%), Gaps = 70/1078 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS YSLL+GA  ++ ++D+ A    PA+AITD   ++  +EF +KA A G++P
Sbjct: 14   RFVHLHVHSEYSLLDGAARIDKLVDRAAELDMPALAITDHGVMYGVIEFYKKAKARGVKP 73

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +  L    Q  +       +VLL    EGY+ L  LVS+ +  +      
Sbjct: 74   IIGCEVYVASRTMLDRDPQKDSDQ---HHLVLLAKDIEGYRNLTALVSQAHT-EGFYYKP 129

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L    ++GLI L+   +G I R    +  + A +R   ++ +FG D  Y+ LQ 
Sbjct: 130  RVDHDRLAR-HSKGLIALSACLAGEIPRLLLNSQERQARERAAFYRDIFGCDNYYIELQD 188

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H     +     +++LA    L LVATN+  ++  +D    DVL+ +     +   +R +
Sbjct: 189  HDIPAQKQVNRSLIRLAGELGLGLVATNDVHYVERKDAYIQDVLLCIQMGKTLQDTERMK 248

Query: 248  VTPDHYLKNRSEMVSI-----------------FSDLPEALENTVEIARRCSFILQVHAP 290
                 +    +  +++                   DL          A            
Sbjct: 249  FDGAEFYLKSAREMAMLFGEVPEALFNSLAIAEACDLQFDFSKQHLPAYPIPDEPAFIQW 308

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                           + E  L      G+  R             DYR+RL FEL  I R
Sbjct: 309  RREHERAPWPGLPWGDAEQYLTYLCSQGMTWRGC-------AKRDDYRRRLAFELQTICR 361

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F+GYFLIV DF  +A++  I VGPGRGS AGS+ AY L ITDIDP+ ++LLFERFLNP
Sbjct: 362  MGFAGYFLIVQDFCAFARREGILVGPGRGSAAGSLVAYVLGITDIDPIEYNLLFERFLNP 421

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPD DIDF   RR EVI YV +KYG +RVAQIITFG++ A+AA+RDVGR L +P +
Sbjct: 422  ERISMPDIDIDFDFVRRSEVIDYVVHKYGSDRVAQIITFGTMAARAAVRDVGRVLNLPLA 481

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
             VD++ K IP +    +  +AI      R        +  L+E ++ +EG+ RHASTHAA
Sbjct: 482  DVDKVAKAIPAELGMTIE-KAIEISPELRALCQDQ-RISHLVETARAIEGMPRHASTHAA 539

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+VI   PL   +P+ R     +    F    +E+ GL+K D LGLKTLTL+   +D + 
Sbjct: 540  GVVIAPSPLIDYLPVQRGADGGVTTQ-FPKDTVEEIGLLKMDLLGLKTLTLIGDVIDKIR 598

Query: 591  Q-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            + RG+++ L  +P DD +T+ LL+   +LG+FQLESSG+R  L  ++P+  +DIIALV+L
Sbjct: 599  RSRGLQLKLKDLPLDDPKTFQLLSRADSLGVFQLESSGLRAILRELKPNSFDDIIALVAL 658

Query: 650  YRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            YRPGP+ + +   +  RK+G+  +  +HP ++P+LK+T GVI+YQEQVM+IA  L+G++L
Sbjct: 659  YRPGPLQSGMVDDFIRRKHGQTTVQYLHPALEPILKDTYGVILYQEQVMRIASELAGFTL 718

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             EAD+LRRAMGKK  + +   +++F+ G + + IS+  A +IF+L+  FA YGFNKSH+A
Sbjct: 719  GEADMLRRAMGKKKPDVIAGLRQQFVEGCAAHHISEKTAGDIFDLMEFFAGYGFNKSHSA 778

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA+I+YQTA++K +YPVEF+A  +T   D+ EK+ ++  + ++  I+++PP VN   +D
Sbjct: 779  AYALIAYQTAYLKANYPVEFMAGLLTSVADSSEKVAQYVDECQRLGIRVLPPDVNASEID 838

Query: 828  FKV------GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRR 880
            F V      G  +I + LAA+K VG      I+ A     PF SL+DFC+R+D+++ NRR
Sbjct: 839  FSVVADPLTGGLQIRFGLAAVKNVGRGAIDAILLARETGGPFTSLDDFCTRIDNRQANRR 898

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-------- 932
            VLESL+ AGAL   G  R  LLQ LD   + A   +++      N+F             
Sbjct: 899  VLESLIKAGALSSLGK-RRPLLQILDKCMEVAARRQRDLATGQMNLFDFGGFGGEGGRGE 957

Query: 933  -----------------TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
                             +    + L + +          E+ +LG YFSGHPL+  +P L
Sbjct: 958  PFEAGALSDFSGFSSGLSAETAVPLPEIADFPHREILAMEKELLGIYFSGHPLEELRPWL 1017

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +                 ++L  ++ + ++  T+KG  + + T  + +   +   FP
Sbjct: 1018 EQQISMTIARIQPDNDQQKVKLGGVIHALRRTTTKKGQLMAYFTLEDWSGGVDVLVFP 1075


>gi|283783968|ref|YP_003363833.1| DNA polymerase III alpha subunit [Citrobacter rodentium ICC168]
 gi|282947422|emb|CBG86967.1| DNA polymerase III alpha subunit [Citrobacter rodentium ICC168]
          Length = 1160

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/1047 (41%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F     +AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHSAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G    +          Q +     +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFHV----------QSELMGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R     +S + E+ +  +++ F DR ++ L
Sbjct: 112  AGPVIDRDWLIEL-NEGLILLSGGRMGDVGRGLLRGNSALVEECVAFYEQHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSADFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +P  Y++   EM  +FSD+PEALEN+VEIARRC+  +++       +   +     
Sbjct: 231  PRNYSPQQYMRTEEEMCELFSDIPEALENSVEIARRCNVTVRLGE-----YFLPQFPTGD 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 286  MTTEDFLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D +   PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      
Sbjct: 525  FAPLYCDEQGQHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGARKNGIDGELAIKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D   I Y + AIKGVG      I+EA  +   F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|323935024|gb|EGB31397.1| DNA polymerase III [Escherichia coli E1520]
          Length = 1160

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNNGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 286  MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|299143802|ref|ZP_07036882.1| DNA polymerase III, alpha subunit [Peptoniphilus sp. oral taxon 386
            str. F0131]
 gi|298518287|gb|EFI42026.1| DNA polymerase III, alpha subunit [Peptoniphilus sp. oral taxon 386
            str. F0131]
          Length = 1149

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1048 (35%), Positives = 590/1048 (56%), Gaps = 47/1048 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS YSLL+G+  ++ + +K       AIA+TD  N++  + F +    AGI+P
Sbjct: 3    DFVHLHVHSEYSLLDGSARISELANKAKELNMKAIALTDHGNMYGTIAFYKACKNAGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ I   +             +   ++LL     G++ L+++VS  + ++      
Sbjct: 63   IIGCEVYIADGNYRVFDK-----NMSRFHLILLAENYTGFKNLMKIVSEGF-VNGYYYKP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            RI L  L++   EG+I  +   +G + R   +     AE+  L ++K+FG    ++ LQ 
Sbjct: 117  RIDLDVLRKYH-EGIIATSACLAGEVQRKLNYGDFTGAEEAALKYEKIFGKGNFFLELQD 175

Query: 189  HRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++ + ++ ++ L+   ++PL+ATN+  +L+ ED +AHDVL+ V   T V++++R +
Sbjct: 176  HDIKEQKKVNKYLETLSAKLDIPLIATNDVHYLNREDAKAHDVLLCVQTGTTVNEENRMK 235

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + YLK+  EM   FS   +AL NTV+IA RC+  ++ H   LP F           
Sbjct: 236  FQTEEFYLKSIDEMYERFSGNEDALLNTVKIADRCNVNIEFHNLHLPHFEVPAGF----T 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+ LR     GL+              ++   R+++E + I  M +  YFLIV DFI++
Sbjct: 292  NESYLRFLVDRGLKE-------RYEIINEEISNRVEYEFHTIIDMGYVDYFLIVWDFIRY 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ N I VGPGRGS AGS+ +YAL I DIDPL+F+LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 345  ARDNGIVVGPGRGSAAGSIISYALRIIDIDPLKFNLLFERFLNPERVSMPDIDIDFCYER 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI YV  KYG E VAQI+TFG++ A+ A+RDVGRAL M Y +VD + K +P +    
Sbjct: 405  REEVIEYVIEKYGIENVAQIVTFGTMGARGAIRDVGRALDMSYGRVDYIAKQVPEELNMT 464

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A+       +    D    RL++++ K+EGL RH STHAAG+VI    ++  VP+ 
Sbjct: 465  IK-DALVVSPSLNKEYNEDEDAKRLIDMALKVEGLPRHTSTHAAGVVISKDAITNYVPLT 523

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
            R+    +  TQFNM  +E+ GL+K DFLGL+TLT+++ +L+ + +   +++D S +  +D
Sbjct: 524  RN--DKIIATQFNMNELEELGLLKMDFLGLRTLTVIRDALNLIKKNYGIEIDFSSMELND 581

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                ++     TLGIFQ ESSGMR  L+ ++PD  ED++A  +L+RPGP++ I  +   K
Sbjct: 582  SNVLNMFAKAETLGIFQFESSGMRAFLKDLKPDAFEDLVAANALFRPGPMNQIPKFIESK 641

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +   KI  +H  ++ +LK T G I+YQEQVMQI Q + GYSL  AD++RRAM KK    M
Sbjct: 642  HNLNKISYVHEKLEDILKSTYGCIVYQEQVMQIVQKIGGYSLGRADLVRRAMSKKKMAVM 701

Query: 726  DKQKE-----------RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +++++           +   GA +NG+ +  A  I++L+  FA Y FNKSH+ AY+V++Y
Sbjct: 702  EEERQNFIYGKIENGKKICCGAIENGVDEASANKIYDLMIDFAKYAFNKSHSVAYSVVAY 761

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            +TA++K +YP EF+AA ++  M  V ++  + ++ ++  I+++PP VN     F V  N 
Sbjct: 762  RTAYLKYYYPTEFMAAQISSYMGKVTQVTLYIEECKRLGIEVLPPDVNESFKHFTVEGNN 821

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGAL 891
            I + L AIK +       I  A     F S  DF  RV   +S+ +N+R +E L+ +GAL
Sbjct: 822  IRFGLKAIKNMNENFISTIEIARKAGKFSSFNDFVKRVCEINSQAINKRAMEYLIKSGAL 881

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D  G +R Q L   +          KN      ++F  +  ++ DK  L K    +++ +
Sbjct: 882  DSLGGNRAQYLAIYEKTIDNVIGNLKNNVKGQFSLF--DTNSYEDKEVLPKLRDFSTNEK 939

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG------NNIRLAAMVVSKQ 1005
             + E+ +LG Y SGHPLD Y   ++ M +          +       + +++  ++ +K+
Sbjct: 940  LDFEKEILGIYVSGHPLDAYIETIKNMNVTNTSIIFENSKNAMRKTDSYVKIVGLLKNKK 999

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               T+    + + +  +   + E   FP
Sbjct: 1000 TMITKNKKIMAFASLEDLYGQIELVIFP 1027


>gi|50119986|ref|YP_049153.1| DNA polymerase III subunit alpha [Pectobacterium atrosepticum
            SCRI1043]
 gi|49610512|emb|CAG73957.1| DNA polymerase III alpha subunit [Pectobacterium atrosepticum
            SCRI1043]
          Length = 1160

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1049 (39%), Positives = 600/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G   +  ++ K AA   PA+AITD  NL   ++F   A  
Sbjct: 1    MAE-PRFVHLRVHSDYSMIDGLAKVGPLVKKTAALGMPALAITDFTNLCGLVKFYGGAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG    ++  +              +  + +L    EGYQ L  L+S  Y    
Sbjct: 60   AGVKPIIGADFYVESDE----------LGDELAHLTVLAMDNEGYQNLTLLISHAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E   EGLI+L+GG  G + R     +   AE+ L  +++ F  R Y+
Sbjct: 110  GAAGPTIDRDWLIE-HQEGLILLSGGRRGDVGRFLLRGNQAQAEQCLAFYQEHFPQRYYL 168

Query: 185  NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R  R  +       V+LA  + LP+VATN   F+S +D++AH++ +A+     +   
Sbjct: 169  ELTRTSRPDEESYIHAAVELATKYGLPVVATNEVCFISTDDFDAHEIRVAIHDGYTLDDP 228

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPRHYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +    + L   +  GLE     L      +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GEMSTADFLVQCSKKGLEDRLESLFPDPEVRVARRPEYDERLDIELGVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N++PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDVPVGPGRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDMVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R       
Sbjct: 523  TDFAPLYCDSEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKLGQE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP  D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIATIPLGDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA   G++  +AV IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKNPVEMAKQRGGFEDGAKSRGVNGELAVKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L D C+R D KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNQGGYFRELFDLCARTDIKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F          + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLADALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYSTVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP+  Y   + +       ++   T RG       +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPITQYIKEIERYAAGVRLKDMHPTDRGKMTTAVGLVLA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMITKRGNRIGICTLDDRSGRLEIMLF 1031


>gi|238796624|ref|ZP_04640131.1| DNA polymerase III subunit alpha [Yersinia mollaretii ATCC 43969]
 gi|238719602|gb|EEQ11411.1| DNA polymerase III subunit alpha [Yersinia mollaretii ATCC 43969]
          Length = 1171

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1049 (38%), Positives = 603/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  
Sbjct: 12   MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHG 70

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    
Sbjct: 71   AGVKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY 120

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL +   EGLI+L+GG  G + R     +    ++ L  +++ F D  Y+
Sbjct: 121  GAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGRFILRGNQAQVDQCLEFYQEHFPDSYYL 179

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  F+ E D++AH++ +A+     +   
Sbjct: 180  ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 239

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 240  KRPKNYSPQQFMRDEEQMCELFADIPEALLNSVEIAKRCNVTIRLGE-----YFLPQFPT 294

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L  K+  GLE RL         +     +Y +RL+ EL VI +M F GYFLI
Sbjct: 295  GEMSTEDFLVEKSKQGLEERLELLFPDPEERAQKRAEYDERLEIELKVINQMGFPGYFLI 354

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 355  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 414

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 415  VDFCMEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 474

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 475  PPDPGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 533

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R       
Sbjct: 534  TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 593

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 594  PIDIASIPLEDQKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 653

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL
Sbjct: 654  LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 713

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 714  GGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSA 773

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    
Sbjct: 774  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 833

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+LE L
Sbjct: 834  FHVNDEGEIVYGIGAIKGVGEGPIEAMLEARKEGGHFKELFDLCARVDTKKLNRRILEKL 893

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+ SL    K A    K       ++F          + +     
Sbjct: 894  IMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQADMFGVLADAPEQVEQSYANVP 953

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 +  + E+  LG Y +GHP+  Y   + +  G +  ++   T RG       +V++
Sbjct: 954  PWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVIA 1013

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1014 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|318606915|emb|CBY28413.1| DNA polymerase III alpha subunit [Yersinia enterocolitica subsp.
            palearctica Y11]
          Length = 1171

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1049 (39%), Positives = 604/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A +
Sbjct: 12   MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHS 70

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG    +          Q +     +  + +L    +GYQ L  L+S  Y    
Sbjct: 71   AGVKPIIGADFYV----------QSEILGDELAHLTVLARNNKGYQNLTLLISEAYQRGY 120

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL +   EGLI+L+GG  G + +     +    E+ L  +++ F D  Y+
Sbjct: 121  GAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGKFILRGNHAQVEQCLEFYQEHFPDSYYL 179

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  F+ E D++AH++ +A+     +   
Sbjct: 180  ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 239

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 240  KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 294

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL          AQ    Y +RL+ EL VI +M F GYFLI
Sbjct: 295  GDMSTEDFLVEKSKQGLEERLEFLFPDPEVRAQKRPAYDERLEIELKVINQMGFPGYFLI 354

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 355  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 414

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 415  VDFCMEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 474

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 475  PPDPGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 533

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R       
Sbjct: 534  TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 593

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 594  PIDIASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 653

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL
Sbjct: 654  LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 713

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 714  GGADMLRRAMGKKNPAEMAKQRSIFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSA 773

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    
Sbjct: 774  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 833

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG    + ++EA  +   F  L D C+RVD+KKLNRR+LE L
Sbjct: 834  FHVNDEGEIVYGIGAIKGVGEGPIKAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKL 893

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+ SL    K A    K       ++F          + +     
Sbjct: 894  IMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVP 953

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 +  + E+  LG Y +GHP+  Y   + +  G    ++   T RG     A +V++
Sbjct: 954  PWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIA 1013

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1014 ARIMVTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|326201799|ref|ZP_08191670.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
            2782]
 gi|325988399|gb|EGD49224.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
            2782]
          Length = 1158

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1055 (35%), Positives = 589/1055 (55%), Gaps = 50/1055 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA  + +++ ++      +IAITD   ++  ++F ++A   GI+PI
Sbjct: 4    FVHLHVHTEYSLLDGANRIKDLIQRVKELGMDSIAITDHGVMYGVVDFYKEAVKNGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++    ++         +       +VLL     GY+ L+++VS  +  +      R
Sbjct: 64   LGCEVYTAKRNMKDKQPGIDS---NYGHLVLLAKNQIGYKNLMKIVSLGFT-EGYYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +    L++  +EG+I L+   SG I  A   N  + A +      ++FG    Y+ LQ +
Sbjct: 120  VDYETLEKY-SEGIIALSACLSGDIPSAILNNDYERAVELSNNLNRIFGQGNFYLELQHN 178

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     Q+++L+    +PLVATN++ +L++E+ ++H++L+ +     ++  +R R 
Sbjct: 179  GISEQNLVNQQLIKLSGELGIPLVATNDAHYLTKENAKSHEILLCIQTGKTINDDNRMRF 238

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  Y+K+  EM   F ++ +ALENTV+IA  C+  L+     LP F  +E        
Sbjct: 239  NTDEVYVKSPEEMYDNFKNVKQALENTVKIAEMCNVELEFGKLHLPSFEVEEG----YTP 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR +   GL+ R           +++   RL++EL+VI++M +  YFLIV DFI++A
Sbjct: 295  YEYLREQCYKGLKSRYGDNC------SEEIIHRLEYELSVISQMGYVDYFLIVWDFIKYA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  I VGPGRGS AGS+ +YAL IT IDPL+++LLFERFLNP+R+SMPD DIDFC +RR
Sbjct: 349  REQGIMVGPGRGSAAGSIVSYALGITSIDPLKYNLLFERFLNPERISMPDIDIDFCYERR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RV+QIITFG++ A+A +RDVGRAL + Y  VD + K+IP      +
Sbjct: 409  QEVIDYVIRKYGKDRVSQIITFGTMAARAVIRDVGRALDISYGDVDAIAKMIPFQIGMNI 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   ++    D     L++ ++ LEGL RHASTHAAG+VI   P+ + VP+  
Sbjct: 469  D-KALEMNQELKKRYETDEETQVLIDTARTLEGLPRHASTHAAGVVISKEPIVEYVPLQL 527

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
            +   +   TQ     +E+ GL+K DFLGL+TLT+++ ++D   Q  G K+D+  I FDD 
Sbjct: 528  N--DNSVTTQVTAVPLEELGLLKMDFLGLRTLTVIRDAVDLAEQVHGKKIDIQQIDFDDK 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y ++    T G+FQLES+GM Q ++ +QP+ +EDIIA +SLYRPGP+D I  Y   KN
Sbjct: 586  DVYKMIGDGRTAGVFQLESAGMTQFMKDLQPNSLEDIIAGISLYRPGPMDQIPRYIRNKN 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              + I   HP+++ +L  T G ++YQEQVMQI + L GYSL  +D++RRAM KK    M+
Sbjct: 646  NPKLIKYHHPMLESILDVTYGCMVYQEQVMQIVRELGGYSLGRSDLVRRAMSKKKISVME 705

Query: 727  KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ F+             GA  NG+ +  A  IF+ +  FA Y FNKSHAAAYAV++Y
Sbjct: 706  QERKNFVYGITDEEGNEVVKGAVNNGVDEITANKIFDEMMDFASYAFNKSHAAAYAVVAY 765

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTAW+K +YPVEF+AAS+   + + +K+ ++  + +  NIQ++PP +N   V F V +  
Sbjct: 766  QTAWLKHYYPVEFMAASINSFLGSSDKVSQYVNECKSLNIQVLPPDINESNVKFTVVNKN 825

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + LAAIK VG    + ++     +  F S  DFC R++ + +N+R +ESL+ +GA D 
Sbjct: 826  IRFGLAAIKNVGENAIKSVIAERQQNGEFSSFLDFCQRIEGRDINKRCVESLIKSGAFDS 885

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFSVENSSVRF 952
                R +L+   + +        K   +   +IF          +          ++   
Sbjct: 886  LKVFRSKLMAVYERLLDGISQNRKKNMDGQLSIFDMMSEPQELLQEDFPDIKEYPANALL 945

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------------VATIRGNNIRLA 998
              E+ +LG Y SGHPL  Y+ IL +       +                       + + 
Sbjct: 946  SMEKEMLGLYVSGHPLSEYQSILERNVNLYSSDLFVDDENSTDMEVSGKKLQDSMRVTVG 1005

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +V  K+ K T+  + + ++   +     E   FP
Sbjct: 1006 GIVAYKKTKATKNNNLMAFIYLEDLFGTMELIVFP 1040


>gi|194435013|ref|ZP_03067254.1| DNA polymerase III, alpha subunit [Shigella dysenteriae 1012]
 gi|194416749|gb|EDX32877.1| DNA polymerase III, alpha subunit [Shigella dysenteriae 1012]
          Length = 1160

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/1049 (40%), Positives = 619/1049 (59%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++          Q       +  + +L     GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNV----------QCDLLGDELTHLTVLAVNNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++
Sbjct: 110  GPAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L   A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLI
Sbjct: 284  GDMSTEDYLVKSAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL N  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGNALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|298531048|ref|ZP_07018449.1| DNA polymerase III, alpha subunit [Desulfonatronospira thiodismutans
            ASO3-1]
 gi|298509071|gb|EFI32976.1| DNA polymerase III, alpha subunit [Desulfonatronospira thiodismutans
            ASO3-1]
          Length = 1156

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/1036 (38%), Positives = 610/1036 (58%), Gaps = 30/1036 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              F HL  H+ YSLL+GA+ + ++  +      PA AITD  N+F +L F  +A   GI+
Sbjct: 2    SDFTHLHCHTEYSLLDGAIRITDLCARAVDLGMPAAAITDHGNMFGSLNFYLEAKKYGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC++ +     +K              +VLL    EGY  L+++V+R +L D     
Sbjct: 62   PIIGCEVYLAQNHQVK--------DQLRYHLVLLAMDKEGYHNLVKIVTRGWL-DGFYYK 112

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L +   +G+I L+    G +         + A +  L +  +F  R Y+ ++ 
Sbjct: 113  PRVDKDIL-KAHNQGIICLSACLQGEVQHVLRRQGFKQARETALQYADIFPGRFYLEMEA 171

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++     Q+++++   +LP+VATN+  +L  +D +AHD+L+ +  ++ V    R R
Sbjct: 172  NGIPEQMEVNDQLLEMSRETQLPVVATNDCHYLGPDDVQAHDILLCIQTNSKVQDSSRMR 231

Query: 248  VTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D        EM   FS  P+ALEN  EI +RC+  ++      PR+        +  
Sbjct: 232  FDTDQLYYKSVEEMEKEFSHCPQALENVQEIIKRCNLEIETDTFHFPRYT----PSRENT 287

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + E  + +  GL+ R  +  +      + YR+RL+ EL +I  M F GYFLIV DFI W
Sbjct: 288  LDEEFISLSREGLQQRFQE--LPYSVDQKHYRERLEEELEIICSMGFPGYFLIVQDFINW 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IPVGPGRGS AGS+ AYAL IT++DP+R++LLFERFLN +R SMPD D+DFC D+
Sbjct: 346  AKSQGIPVGPGRGSAAGSLVAYALRITNLDPIRYNLLFERFLNKERASMPDIDVDFCYDQ 405

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R++VIRYV  KYG + VAQI TFG+++A+A +RDVGRAL M  S  D++ KLIP +    
Sbjct: 406  REKVIRYVAEKYGRDSVAQITTFGTMKARAVVRDVGRALGMKLSLTDKIAKLIPEELKMT 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   R+    D  V RL++I ++LEG+ RHASTHAAGIVI DR + + +P+Y
Sbjct: 466  ID-KAMQQEPDLRKMVDEDEDVARLMDICRRLEGMVRHASTHAAGIVISDRAMQEHLPLY 524

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            R  + +  VTQF+MK +EK GLIKFDFLGLKTLT+L+ +L   ++      DL  +P +D
Sbjct: 525  RGKKDE-VVTQFDMKRVEKVGLIKFDFLGLKTLTVLKDTLAMASRNGQETPDLDSLPLED 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
             ET+ LL    T G+FQLESSGMR  L  ++P C EDIIAL++LYRPGP+++ +   +  
Sbjct: 584  PETFKLLGRGLTDGVFQLESSGMRNVLVDLKPTCFEDIIALLALYRPGPLESGMVTDFIK 643

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G   +   HP ++P+LKET GVI+YQEQVM+IAQ+L+GYSL + D+LRRAMGKK   
Sbjct: 644  RKHGLVPVEYPHPELEPVLKETYGVILYQEQVMKIAQVLAGYSLGDGDILRRAMGKKEAS 703

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M +Q+ +F+ GA ++G+ +  A  IF+L+ KFA YGFNKSH+AAYA+ISYQTA++K H+
Sbjct: 704  VMARQRSKFLQGAKEHGVKQETAEYIFDLVEKFAGYGFNKSHSAAYALISYQTAYLKAHF 763

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P EF+AA +T E++N +K+       R   I ++PP +N+   +F V +N++ + L+ IK
Sbjct: 764  PSEFMAALITSEVNNTDKVIAHVNACRDMEITVLPPCINSSLNEFSVENNQVRFGLSGIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG +    I+     + PF++L DFC RV S+K  +RVLE L+ +GA+D  G SR  LL
Sbjct: 824  NVGRSAIEAIIRERKKNGPFENLLDFCERVGSRKAGKRVLEMLIKSGAMDTLGCSRRALL 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD------KITLEKFSVENSSVRFENEQ 956
              +D +   AQ   KN+     ++ +                   +        + + E+
Sbjct: 884  DGMDMVAARAQRSAKNKVKGQLSMLSLLGEETCQVKGLGLDCPENELEEFQEDEKLKLEK 943

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              LGFY SGHPL  ++  ++++ +   +E +    G  + L  ++V K++  ++KG ++ 
Sbjct: 944  EALGFYLSGHPLLPFRRDIQRLKLSTIQECLELRPGTQVELPVIIVGKKEHVSKKGDKMA 1003

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     E   F
Sbjct: 1004 FCQIEDLTGTAEVTIF 1019


>gi|251778887|ref|ZP_04821807.1| DNA polymerase III subunit alpha [Clostridium botulinum E1 str. 'BoNT
            E Beluga']
 gi|243083202|gb|EES49092.1| DNA polymerase III subunit alpha [Clostridium botulinum E1 str. 'BoNT
            E Beluga']
          Length = 1202

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1077 (35%), Positives = 594/1077 (55%), Gaps = 66/1077 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +H+ YSLL+G+  +  I+ K       +IAITD   L+  ++F + A   GI+P
Sbjct: 18   DFVHLHLHTGYSLLDGSGKIKEIMAKTKELGMNSIAITDHGVLYGLVDFYKAAIEYGIKP 77

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +  +              +   +VLLV    GY+ L+++VS   + +      
Sbjct: 78   ILGCEVYVAGKSMKIKQPDKDN---STYHLVLLVKNEIGYRNLMKIVSTASI-EGFYYKP 133

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+   +L +  ++G+I L+    G +       + + A++  L +K++F +  Y+ +Q H
Sbjct: 134  RVDHEYL-KAHSDGIIALSACLGGEVQSHELKGNYEKAKETALLYKEIFKENFYLEIQNH 192

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     + ++L+    +PLVATN+  +L ++ Y++HD+LM +     V   +R R 
Sbjct: 193  GMDEQRKVNEENIKLSKELGIPLVATNDVHYLKKDGYKSHDILMCIQTGKTVDDVNRRRY 252

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+  EM  +FS +PEALENTV+I+ +C++  + H   LP+F   E +    E 
Sbjct: 253  PSDQFYLKSPEEMWEMFSYIPEALENTVKISEQCNYEYKFHESKLPKFPLPEGE----EP 308

Query: 308  ENELRNKAVAGLEVRLAQ---------------GAIAKGYHAQDYRQRLDFELNVIARMK 352
             N L+N    GL  R  +                  +K    ++   RL++EL +I +M 
Sbjct: 309  YNYLKNTCYMGLIERYEEFKEFRGKDLNYDKLDDLKSKNDSVKELIDRLEYELQIIKQMG 368

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            +  YFLIV DFI++A  N IP GPGRGS AGS+ AY L IT IDP+++SL+FERFLNP+R
Sbjct: 369  YIDYFLIVWDFIKFANDNGIPTGPGRGSAAGSIIAYTLGITKIDPIKYSLIFERFLNPER 428

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPD D DFC +RR EVI YV  KYG + V+QIITFG++ A+A +RDVGRA+   YS+V
Sbjct: 429  VSMPDIDSDFCYERRQEVIDYVVEKYGEDNVSQIITFGTMAARACIRDVGRAMNYSYSEV 488

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            D++CK+IP      +  +A+  +   +E    D  V  L+++S+ LEGL RH+STHAAG+
Sbjct: 489  DKICKMIPTMLGITIE-KALDFNPELKEIYDKDDRVKSLIDMSKDLEGLPRHSSTHAAGV 547

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
            VI   PL Q VP+ ++   ++ VTQF M  +E+ GL+K DFLGL+TLT++ ++L  + + 
Sbjct: 548  VIASTPLVQYVPLQKN--DEMIVTQFGMTTLEELGLLKMDFLGLRTLTVMNEALKIIKEN 605

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            R + +DL  I F+D E Y ++    T G+FQLES GM   ++ ++PD +EDIIA +SLYR
Sbjct: 606  RNIDIDLDKIDFEDKEVYKMIGEGKTAGVFQLESPGMVSFMKELKPDSLEDIIAGISLYR 665

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+  I  Y   K   EK+    P ++ +L  T GV++YQEQVM+I + L+GYS+  +D
Sbjct: 666  PGPMAEIPRYIECKRNPEKVKYEAPELEEILDVTYGVMVYQEQVMEIVRKLAGYSMGRSD 725

Query: 712  VLRRAMGKKIKEEMDKQKERFIS-----------GASKNGISKTIAVNIFELLAKFADYG 760
            ++RRAM KK  + M+++++ FI            G  +NGIS+  A  IF+ +  FA Y 
Sbjct: 726  MVRRAMSKKKHKVMEEERKNFIHGIIENDEVVVPGCIRNGISEEAANKIFDNMMDFASYA 785

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSHAAAYAV+ YQTA++  +YPVE +AA +   M + EK+  +   A +  IQ++PP 
Sbjct: 786  FNKSHAAAYAVVGYQTAYLMKYYPVEMIAAMLNSFMGSSEKVVYYISKAEELGIQVLPPD 845

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNR 879
            +N     F V    I + LAAIK VG      +++   +   FDSL DF S++D   +N+
Sbjct: 846  INESFAKFTVKGETIRFGLAAIKNVGMNLINSVVKTRENKGKFDSLFDFISKIDLSAINK 905

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            R +ESL+ +G  D F   R +LL   + +        K   +   ++FA +   +  +I 
Sbjct: 906  RTIESLIKSGTFDSFKIYRSKLLAVYEKMVDSISNDRKRNIDGQISLFASD-DIYVPEIE 964

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG------IKGYEESVA----- 988
                +  +       E+ + G Y SGHPLD Y   L+         I  + E +      
Sbjct: 965  YPNINEFDKRSLLTMEKEMTGLYISGHPLDDYAQSLKFQTSNEIGKIFSHHELLDDTLEI 1024

Query: 989  ------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                            + + L  ++    +K TR  + + ++   +     E   FP
Sbjct: 1025 QMLDDVINNESGINDNDRVILGGILTQVNKKVTRNNTIMAFLQLEDLTGTIEVIVFP 1081


>gi|218547639|ref|YP_002381430.1| DNA polymerase III subunit alpha [Escherichia fergusonii ATCC 35469]
 gi|218355180|emb|CAQ87787.1| DNA polymerase III alpha subunit [Escherichia fergusonii ATCC 35469]
 gi|323975648|gb|EGB70744.1| DNA polymerase III [Escherichia coli TW10509]
 gi|324112405|gb|EGC06382.1| DNA polymerase III [Escherichia fergusonii B253]
          Length = 1160

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1049 (40%), Positives = 620/1049 (59%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++
Sbjct: 110  GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  +A  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +VV+
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|215485345|ref|YP_002327776.1| DNA polymerase III subunit alpha [Escherichia coli O127:H6 str.
            E2348/69]
 gi|215263417|emb|CAS07737.1| DNA polymerase III, alpha subunit [Escherichia coli O127:H6 str.
            E2348/69]
          Length = 1160

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/1049 (40%), Positives = 618/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++
Sbjct: 110  GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  +A  GLE     L      +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMSTEDYLVKRAKEGLEERLVFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +VV+
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|160893094|ref|ZP_02073882.1| hypothetical protein CLOL250_00640 [Clostridium sp. L2-50]
 gi|156865177|gb|EDO58608.1| hypothetical protein CLOL250_00640 [Clostridium sp. L2-50]
          Length = 1183

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1047 (35%), Positives = 579/1047 (55%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL VH+ YSLL+G+  + +++ +       ++AITD   ++  ++F + A A GI+P
Sbjct: 2    DFTHLHVHTEYSLLDGSAKIKSLVKRAKELGYDSLAITDHGVMYGVIDFYEAARAEGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +         N           +VLL    +GY+ L ++VSR +  +      
Sbjct: 62   IIGCEIYVSPGSRFDRENT--RGEERYYHLVLLAENNQGYKNLSKIVSRGFT-EGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+ +  L++   EG+I L+   +G +      N+ + A++  L   K+FG+   ++ +Q 
Sbjct: 119  RVDMEVLEQYH-EGIIALSACLAGEVAVNLRKNNYEEAKEAALRHLKIFGENNYFLEMQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++    + V++L+    +P+V TN+S ++  ED+EAHDVL+ +  +  V  +DR R
Sbjct: 178  HGLAEQATVNAGVMRLSKELGIPMVVTNDSHYILAEDWEAHDVLLCIQTNRKVHDEDRMR 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             T   +YLK++ EM  +F    EAL NT +IA RC+  +      +P F   +       
Sbjct: 238  YTGGQYYLKSKEEMYKLFPYAKEALANTQKIADRCNVEIVFGEQKVPEFDVPDG----LT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E  L    + G+                +  +RL +E+N I +M +  YFLIV+DFI++
Sbjct: 294  AEEYLEKLCMEGIRK-------RYNPVTPELMERLTYEINTIKKMGYVDYFLIVSDFIRY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + I VGPGRGS AGS+ AY L IT+IDP+R++LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  AKDHGIAVGPGRGSAAGSIVAYCLEITNIDPIRYNLLFERFLNPERVSMPDIDVDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG E+V QI+TF ++ A+  +RDVGRAL +PY+  D + K IP +    
Sbjct: 407  RQEVIDYVVRKYGKEKVVQIVTFQTMAARNVIRDVGRALDLPYALCDSVAKTIPMEIGMN 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A+      +E    +  V +L+++++KLEGL R+   HAAG+VIG   + + VP+ 
Sbjct: 467  ID-TALKVSKELKEMYEGNADVKQLIDMARKLEGLPRNTGMHAAGVVIGRDSIDEYVPLA 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
            R    D  +TQF M  IE+ GL+K DFLGL+TLT++Q ++ F+ Q   V +D+  I +DD
Sbjct: 526  RGG-DDSIITQFTMTTIERLGLLKMDFLGLRTLTVIQDAVKFIKQETGVDIDIDHIDYDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             + + L+T+  T GIFQLESSGM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y N K
Sbjct: 585  KKVFELITSGKTEGIFQLESSGMKSFMKELKPQSLEDVIAGISLYRPGPMDFIPNYINGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
               EKI    P +  +L+ T G I+YQEQVMQI   L+GY+L  +D++RRAM KK  + M
Sbjct: 645  EHPEKITYDVPELQEILEPTYGCIVYQEQVMQIVMKLAGYTLGRSDLVRRAMSKKKADVM 704

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K+++ F+         G    GI +  A  IF+ +  FA Y FNKSHAAAYAV++YQTA
Sbjct: 705  AKERQYFVYGNEELGVPGCIARGIPEATANKIFDDMTDFAKYAFNKSHAAAYAVVAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YPVEF+AA M+   DN  K+  + Q  RQ  I+I+PP +N     F      I Y
Sbjct: 765  FLKCYYPVEFMAALMSSVKDNSSKVAGYIQSCRQMGIRILPPDINEGYSGFSAAKGAIRY 824

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             ++ IK VG+     I+E   A+ P+  ++DF  R+  K+ N++ +E+L+  GA D FG 
Sbjct: 825  GMSGIKSVGSAVVDRIVEEREANGPYKDMKDFLVRMTPKETNKKTVEALILGGAFDSFGV 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKITLEKFSVENSSVRFEN 954
             R Q++ +   +        KN +    +   F   +   + K         +   +   
Sbjct: 885  KRRQMMMAYPMMIDEVYKERKNLSAGQMSFAEFFGGEFAEAAKTKFPDVEEYDEQEKLAL 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL--------AAMVVSKQQ 1006
            E+ VLG Y SGHPL  Y+ ++ +       + +        R+          MV     
Sbjct: 945  EKSVLGIYISGHPLLDYEKLMSEKTAFSSVDFMIDEEEGRARVQDQSICILGGMVADVTV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + +VT  +   + E   FP
Sbjct: 1005 KMTKNNQNMAFVTLEDMVGQTEIIVFP 1031


>gi|238787220|ref|ZP_04631019.1| DNA polymerase III subunit alpha [Yersinia frederiksenii ATCC 33641]
 gi|238724482|gb|EEQ16123.1| DNA polymerase III subunit alpha [Yersinia frederiksenii ATCC 33641]
          Length = 1160

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1049 (39%), Positives = 601/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A +
Sbjct: 1    MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    
Sbjct: 60   AGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL     EGLI+L+GG  G + +     +    ++ L  +++ F +  Y+
Sbjct: 110  GAAGPIIDRDWLIN-HKEGLILLSGGRMGDVGKFILRGNQVQVDQCLEFYQEHFPNSYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  F+ E D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RL+ EL VI +M F GYFLI
Sbjct: 284  GDMSTEDFLVEKSKQGLEERLEFLFPDPEVRAQKRPEYDERLEIELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R       
Sbjct: 523  TDFAPLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKNPAEMAKQRSVFEDGAKSQGVDGELAIKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+LE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+ SL    K A    K       ++F          + +     
Sbjct: 883  IMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 +  + E+  LG Y +GHP+  Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|331645327|ref|ZP_08346438.1| DNA polymerase III subunit alpha [Escherichia coli M605]
 gi|330910034|gb|EGH38544.1| DNA polymerase 3 alpha subunit [Escherichia coli AA86]
 gi|331046084|gb|EGI18203.1| DNA polymerase III subunit alpha [Escherichia coli M605]
          Length = 1160

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/1049 (40%), Positives = 622/1049 (59%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++
Sbjct: 110  GPAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA +  LP+VATN+  F+   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEESYLHAAVELAESRSLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  +A  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|154484297|ref|ZP_02026745.1| hypothetical protein EUBVEN_02010 [Eubacterium ventriosum ATCC 27560]
 gi|149734774|gb|EDM50691.1| hypothetical protein EUBVEN_02010 [Eubacterium ventriosum ATCC 27560]
          Length = 1161

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1050 (34%), Positives = 574/1050 (54%), Gaps = 37/1050 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G+  +  I  +       ++AITD   ++  ++F + A   GI+PI
Sbjct: 3    FAHLHVHTEYSLLDGSSKIKEITKRAKELGMNSLAITDHGVMYGCIDFYRAALENGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +      +   +          ++LL    EGY  L ++VS+ + ++      R
Sbjct: 63   IGCEVYVAPGSRFEK--EAGDNEDRYYHLILLAENNEGYANLCKIVSKGF-VEGFYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +    L++   EG+I L+   +G + +       +  ++  L ++K+FG    ++ +Q H
Sbjct: 120  VDYEVLEKYH-EGIICLSACLAGEVQKYLARGEYEKGKEAALKYEKIFGKGNYFLEMQDH 178

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     Q+++++   E+ LV TN+  +   +D EAHD+L+ +      + +DR R 
Sbjct: 179  GIPEQATVNQQLMRMSEELEIDLVCTNDVHYTFADDVEAHDILLCIQTGKKKADEDRMRY 238

Query: 249  T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 YLK+  EM  +F   P+A+ENT +IA RC+   +     +P F   E        
Sbjct: 239  EGGQFYLKSPEEMYQLFKYAPQAMENTQKIADRCNVTFEFGVTKIPNFPVPEG----YTS 294

Query: 308  ENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               L+     GL  R      +         ++  +RL++ELN I  M +  YFLIV DF
Sbjct: 295  WTYLKELCETGLHNRYPVFKGEVDQNCHLTKEELEERLNYELNTIKNMGYIEYFLIVWDF 354

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I +AK N I VGPGRGS AGS+ +Y L ITDI+P+R++LLFERFLNP+R+SMPD D+DFC
Sbjct: 355  IHYAKSNGIAVGPGRGSAAGSIVSYCLEITDIEPMRYNLLFERFLNPERVSMPDIDVDFC 414

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR EVI YV  KYG + VAQI+TFG+L+A+  +RDVGR L MPY+QVD + K+IP + 
Sbjct: 415  IERRQEVIDYVGRKYGKDHVAQIVTFGTLKARGVIRDVGRVLDMPYAQVDNIAKMIPQEL 474

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +   A+  +   +    +DP V  L+++S++LEGL RHAS HAAG+VI  +P+ + V
Sbjct: 475  NITLD-GALKQNRELKTLYDSDPEVKYLIDMSRRLEGLPRHASMHAAGVVICGKPVDEYV 533

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+ R        TQ+ M  +E+ GL+K DFLGL+ LT++Q +  F+ + RG+++DL  I 
Sbjct: 534  PLSRAA-DGSITTQYIMTTLEELGLLKMDFLGLRNLTVIQNAQRFIKKNRGIELDLMKID 592

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            ++D +    + T  T GIFQLES+GM+  ++ ++P  +EDIIA ++LYRPGP+D I  Y 
Sbjct: 593  YNDKKVLDYIGTGNTEGIFQLESAGMKNFMKELKPQSLEDIIAGIALYRPGPMDFIPKYL 652

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              KN ++ +    P + P+L+ T G I+YQEQVMQI + L+GYSL  +D+LRRAM KK +
Sbjct: 653  EGKNNRDSVTYDCPQLIPILEPTYGCIVYQEQVMQIVRDLAGYSLGRSDLLRRAMSKKKQ 712

Query: 723  EEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
              M+K+++ F+         G  KNGIS+ IA  I++ +  FA Y FNKSHAAAY V++Y
Sbjct: 713  AVMEKERQSFVYGNREEGVKGCIKNGISEEIANKIYDEMIDFAKYAFNKSHAAAYGVVAY 772

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +Y  EF+AA +T  MD   K+ ++    R   I+I+PP +N     F    N 
Sbjct: 773  QTAYLKYYYAAEFMAAMLTSVMDISTKVAEYVYSCRSMGIEILPPDINEGESGFSAKGNS 832

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y L AIK VG      I+E       +  LEDF +R  +  +N+R +E+ + AGA D 
Sbjct: 833  IRYGLTAIKNVGKNIIDGIVEEREKHGKYTDLEDFITRTANLGVNKRAIENFIKAGAFDS 892

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVR 951
               +R Q++     I        K+      +IF     +  +  K+ +          +
Sbjct: 893  LNATRKQMMMVYIQILDGVNKENKDAWEGQMSIFDMADDSTKEKYKVKMPDVGEYTVDQK 952

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------TIRGNNIRLAAMVVS 1003
               E+ V+G Y SGHPL   +   RK       +               + + +  ++ +
Sbjct: 953  LAFEKEVIGIYASGHPLQAQEQKWRKHITNMSIDFTEPEEGEESKVPDKSKVAVGGIISA 1012

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +K T+ G ++ ++T  +     E   FP
Sbjct: 1013 ITKKFTKTGQQMAFITLEDLVGTVEVVVFP 1042


>gi|326791665|ref|YP_004309486.1| DNA polymerase III subunit alpha [Clostridium lentocellum DSM 5427]
 gi|326542429|gb|ADZ84288.1| DNA polymerase III, alpha subunit [Clostridium lentocellum DSM 5427]
          Length = 1155

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/1047 (37%), Positives = 594/1047 (56%), Gaps = 44/1047 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G+  +N++LD++      ++AITD   +F A++F + A    I PI
Sbjct: 5    FTHLHVHTEYSLLDGSAKINDLLDRVKELGMDSVAITDHGVMFGAIDFYKAAKQRDINPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +                  +VLL    +GYQ LI++VS  ++ +   +  R
Sbjct: 65   IGCEVYLAARTRFDKEPVD----ARSYHLVLLAENNKGYQNLIKMVSSGFI-EGFYRRPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            I +  L+E   EGLI L    +GP+ R    ++ + A+   LT +++ G    ++ +Q H
Sbjct: 120  IDIELLRE-HHEGLIALGACLAGPVSRRLLNDNYEEAKAAALTLEEIMGKGNFFLEIQDH 178

Query: 190  RGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D+ + +Q+ ++LA    +P+VATN+  ++ +ED   H+VL+ +     +  +DR   
Sbjct: 179  GIKDQQKVNQLTLRLAEETGIPIVATNDVHYIKDEDANPHEVLLCIQTGKTMEDEDRMVY 238

Query: 249  T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 YLK+ SEM  +F    EALENT +IA+RC      H   LP+F   E     K  
Sbjct: 239  EGGQFYLKSPSEMAMLFPYAEEALENTNKIAQRCHVDFTFHELKLPKFDVPEG----KTA 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E  LR +   GL+               +  +RL++EL +I +M F  YFLIV DFI++A
Sbjct: 295  ETFLRERCYEGLKK-------RYETITPELEERLEYELGIIIQMGFVDYFLIVGDFIKYA 347

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K ++IPVGPGRGS AGS+ AY L IT+IDP+++ LLFERFLNP+R+SMPD DIDFC +RR
Sbjct: 348  KDHDIPVGPGRGSAAGSIVAYTLEITNIDPIKYQLLFERFLNPERVSMPDIDIDFCYERR 407

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV  KYG +RVAQI+TFG+L A+A +RDVGRA+ MPY+ VD++ K+IPN+    +
Sbjct: 408  QEVIEYVIRKYGADRVAQIVTFGTLAARAVIRDVGRAINMPYADVDKVAKMIPNELKITI 467

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +   RE    +  +  LL+ S KLEGL RH+S HAAG+VI ++P+ + VP+  
Sbjct: 468  K-KALNMNDELRELYNTNEQIKYLLDTSMKLEGLPRHSSMHAAGVVISNKPVVEYVPL-- 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
            +    +  TQ+ M  +E+ GL+K DFLGL+TLT++  ++  + +   + +D+  I   D 
Sbjct: 525  NASEGVVTTQYPMTTLEELGLLKMDFLGLRTLTVIDNAVKLVKKNHDIDIDIEKIDDHDP 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            + Y L+ +  T GIFQLES+GM+  ++ + P C+EDIIA VSLYRPGP+D I  Y   K 
Sbjct: 585  KVYELIASGNTEGIFQLESAGMKNFMKELAPTCLEDIIAGVSLYRPGPMDFIPKYVQGKR 644

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                I   HP ++P+L+ T G I+YQEQVMQI + L+GYSL  +D+LRRAMGKK  + M+
Sbjct: 645  DANSITYTHPALEPILENTYGCIVYQEQVMQIVRDLAGYSLGRSDLLRRAMGKKKIDVMN 704

Query: 727  KQKERF-------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K++E F       + G  KN I   I   IF+ +  FA Y FNKSHAAAYAV++YQTA++
Sbjct: 705  KEREIFLYGDGDSVPGCVKNNIPAEIGNKIFDEMVDFAKYAFNKSHAAAYAVVAYQTAYL 764

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            KT+Y VEF+AA MT  MD   KI  + +  ++  I+++ P +N     F    ++I Y L
Sbjct: 765  KTYYKVEFMAALMTSVMDVTTKITGYMETCKRMGIEVLSPDINEGHAYFDANGDKIIYGL 824

Query: 840  AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            AAIK VG      I+E    +  F SL DF +R++SK  N+R +ESL+ AGA D  G  R
Sbjct: 825  AAIKNVGKNVIDRIVEERQRNGRFKSLTDFYNRMESKDTNKRSIESLILAGAFDHLGGRR 884

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQR 957
             Q +     I        KN      ++F    +    DK  L      +S      E+ 
Sbjct: 885  SQYMAVYKQIANGINLNRKNNIQGQIDLFGLGSEEVVEDKDHLPDIPEFDSKELLNYEKE 944

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVA-----------TIRGNNIRLAAMVVSKQQ 1006
            V+G Y SGHPLD  +  L +      ++                 G  + +  +++ K+ 
Sbjct: 945  VMGIYLSGHPLDKVRGSLERYITLTSDQLAPPSEEEETEEEQIYDGKRVVVGGILIEKKV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              T++  ++ ++T  +     E   FP
Sbjct: 1005 IFTKQNKKMAFLTLEDTRGVMEIVVFP 1031


>gi|320639990|gb|EFX09575.1| DNA polymerase III subunit alpha [Escherichia coli O157:H7 str.
            G5101]
          Length = 1160

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTVPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 286  MSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|187733784|ref|YP_001878986.1| DNA polymerase III subunit alpha [Shigella boydii CDC 3083-94]
 gi|187430776|gb|ACD10050.1| DNA polymerase III, alpha subunit [Shigella boydii CDC 3083-94]
          Length = 1160

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1049 (40%), Positives = 620/1049 (59%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R+    +S +  + +  +++ F DR ++
Sbjct: 110  GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVGECVAFYEEHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRLDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLI
Sbjct: 284  GDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|282882675|ref|ZP_06291285.1| DNA polymerase III subunit alpha [Peptoniphilus lacrimalis 315-B]
 gi|281297488|gb|EFA89974.1| DNA polymerase III subunit alpha [Peptoniphilus lacrimalis 315-B]
          Length = 1145

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1051 (35%), Positives = 583/1051 (55%), Gaps = 50/1051 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YSLL+ +  +  I  +       A+A+TD  N++ A++F +    
Sbjct: 1    MSN---FIHLHVHSEYSLLDASTKIEEIPVRAKELGMKAVALTDHGNMYGAIDFYKACKK 57

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIGC++ +  +         +        +VLL    +G + L+++VS  + +D 
Sbjct: 58   VGVKPIIGCEIYVSQKSLYLKDRTNER-----YHLVLLAENNQGLKNLMKIVSIAF-VDG 111

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 R+ L  L++  ++G+I  +   +G + R         A+K  L ++ +FG D  +
Sbjct: 112  YYYKPRVDLDVLKKY-SKGIIATSACLAGEVQRLIQRRDYDGAKKAALRYRDIFGKDNFF 170

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ H   ++ R   ++ +L+    + L  +N+  +L +ED +A DVL+ +   + +  
Sbjct: 171  LELQDHGIPEQKRVNRELNRLSKETGISLSCSNDVHYLKKEDAKATDVLLCIQTGSKIKD 230

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            + R +  T + YLK+  EM +IFSD  +A+ NT  IA RC+   +     LP F      
Sbjct: 231  EKRMKFPTEEFYLKSAEEMENIFSDNLDAINNTGIIADRCNVDFEFGHYHLPEFKVPSG- 289

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                  E+ L   A  GL               +  + R + E   I +M F  YFLIV 
Sbjct: 290  ---YTNESYLEKLAKEGLNK-------RYKVIDKKIKDRFNMEFQTITQMGFVDYFLIVW 339

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI +AKKNNI VGPGRGS AGS+ +Y L I DIDPL+F LLFERFLN +R+SMPD DID
Sbjct: 340  DFINYAKKNNIQVGPGRGSAAGSIISYGLGIIDIDPLKFDLLFERFLNKERVSMPDIDID 399

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RR+EVI YV  KYG ERVAQI+TFG++Q++ A+RDVGR L + YS+VD + K +P+
Sbjct: 400  FCYERREEVIDYVCEKYGDERVAQIVTFGTMQSRQAIRDVGRVLDIAYSRVDYIAKQVPH 459

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +  +A+     F+E    D     L++I++++EGL RH STHAAG+VI   PL+ 
Sbjct: 460  ALKMTLD-KALDISESFKELYEKDKEARNLIDIAKRIEGLPRHTSTHAAGVVISKNPLTD 518

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSL 600
             VP+ R+    +  TQFNM  +E+ GL+K DFLGL+TLT+L+ ++        VK+D S 
Sbjct: 519  YVPLTRN--DQIIATQFNMIQLEELGLLKMDFLGLRTLTVLRDAISLVYDNYKVKIDFSE 576

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
              +DD +   +     TLG+FQ ESSGMR  L+ ++PD   D++A  +L+RPGP+  I  
Sbjct: 577  FTYDDEKVLKMFAKAETLGVFQFESSGMRLFLKELKPDAFSDLVAANALFRPGPMKQIPK 636

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K+ K KI  IHP+++P+LK+T G I+YQEQVMQI Q++ GYSL  AD++RRA+ KK
Sbjct: 637  FIESKHDKSKISYIHPILEPILKDTYGCIVYQEQVMQIVQIVGGYSLGRADIVRRAISKK 696

Query: 721  IKEEMDKQKERFI--------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
                M+++++ FI         GA KNG+ +  A  I++L+  FADY FNKSH+ AY+VI
Sbjct: 697  KMAVMEEERKNFIYGNEKENVCGAIKNGVDEKSANEIYDLIIDFADYAFNKSHSVAYSVI 756

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +Y++AW+K +YP EF+AA ++    +++++  + ++ ++  I ++PP+VN    +F V  
Sbjct: 757  AYRSAWIKYYYPREFMAAQISTYTSDIKQVSLYIEELKRLGIGLLPPNVNYSQKNFTVEG 816

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDF---CSRVDSKKLNRRVLESLVFA 888
             +I + L A+K VG      I++A      F SL DF     +V ++ LN++ LESL+  
Sbjct: 817  KKIRFGLKAVKNVGENLIEAIVQARDKLGNFTSLWDFVDKVQKVSAQVLNKKALESLIRC 876

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GALD F  +R Q L   + + +  Q   +N       +F +   +      L      + 
Sbjct: 877  GALDDFDGNRAQYLAVYEKVMENNQKSIRNNIRGQVTLFGNLNKSED----LPNLKDFSL 932

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------GNNIRLAAMVV 1002
              +   E+ V+G Y SGHPLD Y+P L         E   +          +IR+A ++ 
Sbjct: 933  RDKLNMEKEVIGIYVSGHPLDDYRPALISFSNTNTGEIFESYNSSSLIQNKDIRIAGLLK 992

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +K+   T+    + + +  +     E   FP
Sbjct: 993  NKKTMITKTNKVMAFASLEDLFGTIELIIFP 1023


>gi|239626635|ref|ZP_04669666.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516781|gb|EEQ56647.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1161

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1048 (36%), Positives = 572/1048 (54%), Gaps = 41/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +  +  +       ++A+TD   ++  ++F + A  AGI+P
Sbjct: 2    AFTHLHVHTEYSLLDGSCKIKELTARAKELGMDSMAVTDHGVMYGVIDFYKAAKEAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +          +  +       +VLL    +GY+ L+++VS+ + +D      
Sbjct: 62   ILGCEVYVAPNSRFDR--ETVSGEDRYYHLVLLAENNQGYENLMKIVSKGF-VDGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L +   +G+I L+   +G + R       + A +    +  +FG D  ++ LQ 
Sbjct: 119  RVDYEVLAKYH-QGVIALSACLAGEVQRYLTRGMYEEAVRAAGRYVDIFGKDNFFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+      +++++    L LVATN+  +   ED +AHD+L+ +     V  +DR R
Sbjct: 178  HGLPDQKLVNQGLMRMSRETGLELVATNDIHYTFAEDEKAHDILLCIQTGKKVEDEDRMR 237

Query: 248  VTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y      EM ++F   P+ALENT +IA RC+  ++     LPR+   E  D    
Sbjct: 238  YEGGQYYCKSEEEMKALFPYAPQALENTHKIAGRCNVEIEFGVTKLPRYEVPEGFD---- 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L +    G + R  +              RLD+EL+ I  M +  YFLIV DFI +
Sbjct: 294  SWSYLNHLCREGFKTRYPEDDGTLSS-------RLDYELDTIRTMGYVDYFLIVWDFINY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I VGPGRGS AGSV +Y L IT+IDP+R++LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 347  ARSQGIMVGPGRGSAAGSVVSYTLGITNIDPVRYNLLFERFLNPERVSMPDIDIDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG ++V QI+TFG+L AK  +RDVGR L +PYS  D + K+IPND    
Sbjct: 407  RQEVIDYVVRKYGKDQVVQIVTFGTLAAKGVVRDVGRVLGLPYSMCDTIAKMIPNDLGMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   ++A   D  V  L+++S++LEGL RH S HAAG+VIG R + + VP+ 
Sbjct: 467  LD-KALVMNPDLKKAYNEDQQVRNLIDMSKRLEGLPRHTSMHAAGVVIGSRSIDEFVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
            R        TQF M  IE+ GL+K DFLGL+TLT++Q ++    +   + +D+  I FDD
Sbjct: 526  RAS-DGTITTQFTMTTIEELGLLKMDFLGLRTLTVIQNAVRLAEKDYGISIDVDHIDFDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +    + T  T G+FQLES+GM+  ++ ++ + +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 585  KQVLESIGTGRTEGVFQLESAGMKSFMKELKAENLEDIIAGISLYRPGPMDFIPRYLKGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N KE I    P ++ +L  T G I+YQEQVMQI + L+GY++  +D++RRAM KK    M
Sbjct: 645  NDKESITYECPQLEHILSPTYGCIVYQEQVMQIVRDLAGYTMGRSDLVRRAMSKKKTSVM 704

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +K++  F+         G  KNGI +  A +I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 705  EKERHNFVYGNEEEGVKGCVKNGIDEKTANHIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVGDNRIY 836
            ++K +YP EF+AA MT  MDNV K  ++    R+   I ++PP +N     F V    I 
Sbjct: 765  YLKYYYPREFMAALMTSVMDNVGKFSEYILTCRRMMGIPVLPPDINEGESGFSVSGEAIR 824

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y L+AIK VG      I+       PF S+EDF  R+  K++N+R LE+ + +GALD   
Sbjct: 825  YGLSAIKSVGKPVVDVILAERGKGGPFRSMEDFVGRMSMKEVNKRTLENFIKSGALDTLP 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFE 953
             +R Q +     + +      K+      ++F  A E+     +IT       +      
Sbjct: 885  GTRRQKMAVAPTMLEEKARERKSMFEGQLSLFDIAGEEARNEFQITFPDVGEYSKEELLA 944

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQ 1005
             E+ +LG Y SGHPLD Y+   R+       + +            G+ + +  MV  K 
Sbjct: 945  FEKEILGVYISGHPLDDYEEAWRRNITATSADFMVDEETEKAGVQDGSRVVIGGMVAGKT 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K TR    + ++T  +     E   FP
Sbjct: 1005 VKTTRTNQLMAFITLEDLMGSVEVIVFP 1032


>gi|283850843|ref|ZP_06368129.1| DNA polymerase III, alpha subunit [Desulfovibrio sp. FW1012B]
 gi|283573766|gb|EFC21740.1| DNA polymerase III, alpha subunit [Desulfovibrio sp. FW1012B]
          Length = 1153

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1037 (40%), Positives = 598/1037 (57%), Gaps = 29/1037 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              FVHL  H+ YSLL+GA+ + +++   A+   PA AITD  NL  AL F   A  AGI+
Sbjct: 2    SDFVHLHCHTEYSLLDGAIRIGDLVKTAASFGSPAAAITDHGNLHGALIFYDYAKKAGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC++ +            + P      +VLL     GY+ L++LV+  +  +     
Sbjct: 62   PIIGCEVYVTAASR-----HDRDPRNPRYHLVLLAQNLAGYKNLLKLVTLGHT-EGMYYK 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L + G EGLI L+    G I++         A      +  LF DR Y  +Q 
Sbjct: 116  PRVDKELLGKYG-EGLIALSACLKGEINQRLLKEGKDQAVACAREYMALFPDRFYFEIQA 174

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++      ++ L+   ++PLVATN+  +L  ED EAHDVL+ +  +  V    R R
Sbjct: 175  NGIPEQQTVNDFLIDLSDDLKVPLVATNDCHYLRAEDAEAHDVLLCIQTAACVDDAKRMR 234

Query: 248  VTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             T          EM   F+ +P+AL NT EIA R    L+      P +         K 
Sbjct: 235  FTTKDLYYRSPDEMAEAFAHVPQALANTCEIAERVDLSLKFGDYHFPVYKTPPG----KS 290

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++ + + A  GL  RLA+   A     + Y  RL+ EL+VI +M F GYFLIV DFI W
Sbjct: 291  LDDVMADMARQGLRDRLAKMPDA---EPKKYWDRLELELDVIKQMGFPGYFLIVQDFINW 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + IPVGPGRGS AGS+ AYAL IT++DPL + LLFERFLN +R+SMPD D+DFC+ R
Sbjct: 348  AKDHGIPVGPGRGSAAGSLVAYALRITNLDPLPYDLLFERFLNIERVSMPDIDVDFCERR 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVIRYV  +YG   VAQI TFG+++AK  +RDVGRAL M + + DR+ KLIP++    
Sbjct: 408  RYEVIRYVTERYGENAVAQITTFGTMKAKGVVRDVGRALGMTFGETDRIAKLIPDELKMT 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   +     DP V  L++IS++LEGL RHASTHAAG+V+ D  +++ VP+Y
Sbjct: 468  ID-KALEREPELKVLMRTDPRVGHLIDISKRLEGLARHASTHAAGVVVSDTAMTEYVPLY 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
            +  +++  VTQ++MK +EKAGL+KFDFLGLKT+T++  +L  +        DL  +PF D
Sbjct: 527  KG-KNNETVTQWDMKRVEKAGLVKFDFLGLKTMTVIDDALKIIEGMGVTPPDLDTLPFTD 585

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
             +TY L     T GIFQ+ES GMR+ L  ++P+C ED+IA+++LYRPGP+ + +V  +  
Sbjct: 586  EKTYELFAKGDTDGIFQVESQGMRKYLRMLRPNCFEDLIAMLALYRPGPLGSGMVEQFIR 645

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G++ +   HP ++  LK T GVI+YQEQVM+IAQ+L+ +SL   D+LRRAMGKK  E
Sbjct: 646  RKHGEDPVEYPHPRLEETLKPTYGVIVYQEQVMKIAQVLASFSLGAGDLLRRAMGKKNAE 705

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM KQ++ F+ G + NGI    A  IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K HY
Sbjct: 706  EMGKQRQFFVDGCAGNGIEAKKANEIFDLMEKFAEYGFNKSHSAAYALISYHTAYLKAHY 765

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PV F+AA MT +M+N +K+ ++    R  +I++ PP VN     F V DN+I Y LAA+K
Sbjct: 766  PVAFMAALMTSDMENQDKLLQYIAACRDNDIELCPPDVNAGLPHFSVKDNKILYGLAAVK 825

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             +G      I+    A+ PF SL DF SRV+ +K+ +RV+E L+  GA D FG SR  L+
Sbjct: 826  NIGRDAVAEIVAEREANGPFTSLLDFTSRVNMRKVTKRVIEYLIKCGACDGFGCSRAGLV 885

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL------EKFSVENSSVRFENEQ 956
              LD      Q    ++ +   ++           + L                    E+
Sbjct: 886  AGLDQAAALGQKRAADKNDGRLSLMTLMPEKPKPTVGLGLSCPEATLPEWLHEEMMAFEK 945

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              LGFY + HPL  Y+  LR M      +      G  +++A + VS ++  T+KG ++ 
Sbjct: 946  EALGFYLTSHPLLAYERDLRAMRTTTLAQCAGIEPGVEVKVACICVSTKEIITKKGQKMA 1005

Query: 1017 WVTFSE-PAKEYEANFF 1032
            +    +    E EA  F
Sbjct: 1006 FCKLEDHLGGEAEAVVF 1022


>gi|331661558|ref|ZP_08362482.1| DNA polymerase III subunit alpha [Escherichia coli TA143]
 gi|331061473|gb|EGI33436.1| DNA polymerase III subunit alpha [Escherichia coli TA143]
          Length = 1160

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 286  MSTEDYLVMRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|209964522|ref|YP_002297437.1| DNA polymerase III subunit alpha [Rhodospirillum centenum SW]
 gi|209957988|gb|ACI98624.1| DNA polymerase III alpha subunit [Rhodospirillum centenum SW]
          Length = 1165

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 506/1048 (48%), Positives = 701/1048 (66%), Gaps = 28/1048 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              F+HL+VHS+YSL EGA+ +  ++        PA+A+TDT NLF  LEF+  A  AGIQ
Sbjct: 2    SDFIHLRVHSAYSLSEGAIKVKELVKLCQKQGMPAVAVTDTGNLFGCLEFAMAAADAGIQ 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGCQ+ I      +    G+T  P    +VLLV + +GY+ L++LVS+ YL  +    
Sbjct: 62   PIIGCQMWI-RSWGPQKRGLGRTTGPAADQLVLLVQSQQGYRNLMKLVSKAYLETEPGLL 120

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             ++ +  L E  +EGLI LTGG  G + R         AE+ LL    LF  RLYV L R
Sbjct: 121  PQVSVDDL-EGHSEGLICLTGGPGGGVGRLLAEGQKPHAEELLLRLAALFPGRLYVELMR 179

Query: 189  H-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            H        +   E  ++ LAY H+LPLVATN+  F     ++AHDVL+ +A    + Q+
Sbjct: 180  HPEGPMGQAEDRIEPDLIDLAYAHDLPLVATNDVYFADPGMHQAHDVLLCIAEGAYIMQE 239

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            +R RVTP H  K+ +EM  +F+DLPEA++NTV IARRC+++ +   PILP F+  +  + 
Sbjct: 240  ERRRVTPHHCFKSAAEMRELFADLPEAVDNTVVIARRCAYMPKKVNPILPAFVPGDSKEA 299

Query: 304  QKE-EENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSG 355
            Q+E E +ELR +A  GL  RL +         +        YR+RLDFELN I +MKF G
Sbjct: 300  QEELEADELRRQAHEGLTWRLEKYVFTPDQTPETRTEIEAQYRERLDFELNTIVKMKFPG 359

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV+DFI+WAK   IPVGPGRGSGAGS+ A++L+ITD+DP+R+ LLFERFLNP+R+SM
Sbjct: 360  YFLIVSDFIKWAKGQGIPVGPGRGSGAGSLVAWSLSITDLDPIRYGLLFERFLNPERVSM 419

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFD+DFCQDRRDEVIRYVQ KYG+++VAQIITFG LQA+A +RDVGR LQMPY QVDR+
Sbjct: 420  PDFDVDFCQDRRDEVIRYVQRKYGYDKVAQIITFGKLQARAVVRDVGRTLQMPYGQVDRI 479

Query: 476  CKLIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            CKLIPN+PA+PV   QAI  +   ++ R +D +V RLL+I+ KLEGLYRHASTHAAG+VI
Sbjct: 480  CKLIPNNPANPVGLQQAIDGEPLLQDMRKSDETVGRLLDIALKLEGLYRHASTHAAGVVI 539

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
            GDRPL +LVP+YRD RSD+PVTQFNMK++E AGL+KFDFLGLKTL++L+ ++D +  R V
Sbjct: 540  GDRPLDELVPLYRDPRSDMPVTQFNMKYVELAGLVKFDFLGLKTLSVLKTAVDHVRHRDV 599

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +DL  +P  D ++Y LL    + G+FQLESSGMR  L  M+P+ IEDIIALVSLYRPGP
Sbjct: 600  DLDLLDLPMLDEKSYGLLGRAESSGVFQLESSGMRDVLRRMKPNRIEDIIALVSLYRPGP 659

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +DNI  Y   K G+E    +HP ++P+LKET G+++YQEQVMQIAQ+L+GYSL  AD+LR
Sbjct: 660  MDNIPKYIKVKFGEEAPDYMHPSLEPILKETFGIMVYQEQVMQIAQVLAGYSLGGADLLR 719

Query: 715  RAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RAMGKKIKEEM+K++ +FI+GA +  G+ +  +  IF+ + KFA YGFNKSHAAAYA+++
Sbjct: 720  RAMGKKIKEEMEKERAKFIAGAKEKMGVDEEHSGLIFDQVNKFAGYGFNKSHAAAYALVA 779

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-- 831
            YQTA++K ++PVEF+AA+MT ++ N +K+ +F Q+  +  ++++PP +N     F V   
Sbjct: 780  YQTAYLKANFPVEFMAATMTYDLGNTDKLNQFKQELDRLRVRLLPPDINRSGERFTVEVM 839

Query: 832  ---DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
               D  + Y+LAAIKGVG      ++ E  A+ PF  + DF  RVD+  +N+R++E LV 
Sbjct: 840  PNGDRAVRYALAAIKGVGLPAMEAVVAERRANGPFRDIFDFARRVDTGAINKRMMEKLVC 899

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGA D     R QL   LD I ++AQ   + R +   ++F       +    L + +  +
Sbjct: 900  AGAFDALNAHRHQLFAGLDTIMRFAQSEAQQRESGMASLFGASAALKTPD--LPRIADWD 957

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-TIRG--NNIRLAAMVVSK 1004
               +  +E   +GFY S HPLD Y   L ++G+  + +  A   RG     ++A +VV++
Sbjct: 958  PLEKLRHEFEAIGFYLSAHPLDGYGKALERLGVVRFADLAARVARGGSTRFKMAGIVVAR 1017

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            Q++  + G+R  +++ S+ +  +E   F
Sbjct: 1018 QERTAKSGNRFAFISMSDSSGVFEVTLF 1045


>gi|307243299|ref|ZP_07525466.1| DNA polymerase III, alpha subunit [Peptostreptococcus stomatis DSM
            17678]
 gi|306493317|gb|EFM65303.1| DNA polymerase III, alpha subunit [Peptostreptococcus stomatis DSM
            17678]
          Length = 1200

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1059 (36%), Positives = 597/1059 (56%), Gaps = 50/1059 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL VH+ YSLL+G   L+ ++ ++      + AITD  ++F  ++F +K  +AGI+P
Sbjct: 8    DFCHLHVHTEYSLLDGFSRLDKLISRVKDLGMSSCAITDHGSMFGVVDFYKKCKSAGIKP 67

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +D   M ++  T       ++LL    +GY+ LI++VS  Y +D      
Sbjct: 68   IIGCEVYLAPRD---MESKDSTLDKYSSHLILLAENNQGYKNLIKIVSDAY-VDGFYYKP 123

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R     L++  +EG+I L+   +G I +A    +   A         +FG D  ++ +Q 
Sbjct: 124  RTDKDHLRKY-SEGIICLSACLNGEIPKAILARNFDKARSLAQENIDIFGKDNFFLEVQD 182

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H+   D+   + +++L+   ++PLVATN++ ++  ED    DVLM +     +    R +
Sbjct: 183  HKLAEDKEVNAGLLKLSKEMDIPLVATNDAHYVYREDARIQDVLMCIQMQKTLDDPSRMK 242

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + Y+K+R EM  +F+  PEA+ENT++IA RCS      +  +P F   E       
Sbjct: 243  FPNDEFYIKSREEMEDLFAFSPEAVENTLKIAERCSVEFDFDSYHIPTFDVPEG----YT 298

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L++    GL  R       +G   QD R RL++E++VIA M +  YFLIV DFI +
Sbjct: 299  SLTYLQHICNQGLLERY---GDEEGNVEQDLRDRLNYEIDVIANMGYIEYFLIVWDFINY 355

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +K+NNI VGPGRGS AGS+ AY L ITDIDP++++LLFERFLNP+R++MPD DIDFC +R
Sbjct: 356  SKQNNIMVGPGRGSAAGSIVAYTLKITDIDPIKYNLLFERFLNPERVTMPDIDIDFCYER 415

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI YV+ KYG + VAQIITFG++ AK A+RDVGR L + Y++VD + K IP      
Sbjct: 416  REEVIDYVKRKYGIDHVAQIITFGTMGAKLAIRDVGRVLDVAYNKVDSVAKEIPFALGMT 475

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A   +   R+    D  V  +++IS+++EG+ RHASTHAAG+VI  RP+ + VP+Y
Sbjct: 476  ID-KAFDMNPSLRKLYDGDHEVKEIIDISKEMEGMVRHASTHAAGVVISKRPVYEYVPLY 534

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF------LAQRGVKVDLSL 600
            ++   D   TQF M  +E+ GL+K DFLGL+TLT+++ +LD             K+D S 
Sbjct: 535  KN--QDSITTQFTMTTLEELGLLKMDFLGLRTLTVIRDALDLIEINREKKGYKGKIDFSK 592

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            + ++D + + L++   TLG+FQLES GMR  ++ ++P+C EDI+A +SL+RPGP+D+I  
Sbjct: 593  MEYNDPKVFDLISQANTLGVFQLESGGMRNFMKQLKPNCFEDIVAGISLFRPGPMDSIPT 652

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y N KN  +++  +H  + P+L  T G ++YQEQVMQ+ + L GYSL  +D +RRAM KK
Sbjct: 653  YINCKNNPDQVTYLHEKLRPILDVTYGCLVYQEQVMQVVRDLGGYSLGRSDSVRRAMSKK 712

Query: 721  IKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
              + M+K+++ FI             G  +NG+ + +A  IF+ +  FA Y FNKSHAAA
Sbjct: 713  KMDVMEKERQYFIHGKLDENDNIEIAGCVRNGVPEDVANQIFDDMIDFAKYAFNKSHAAA 772

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y V+SY+TA++K +YPVEF+AA MT  M N +K+ ++ ++     I ++PP +N     F
Sbjct: 773  YGVLSYETAYLKCYYPVEFMAALMTSIMGNNDKVVEYMRECSSMGIGVLPPDINKSFSKF 832

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V  + I + LAA+K VG     +I+    A+ P+ +L D   R+DSK  N++ +ESL+ 
Sbjct: 833  SVDGDHIRFGLAAVKNVGANAIDNIVAEREANGPYKNLTDLVKRIDSKFANKKTIESLIK 892

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI----TLEKF 943
             GA D  G +R  L+ + +++       +K       ++F                +E  
Sbjct: 893  CGAFDSTGDNRASLMFAFEDVLDSISRDKKRNVEGQMSMFDMFADMGKQGELELGKIEGV 952

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI---------RGNN 994
                  +R + E+ VLG Y SGHPL  Y   L +                         +
Sbjct: 953  EEFRDRIRLDMEKEVLGLYVSGHPLSEYSEKLEQRISITNARINKLKEEPEKLLEINEQD 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +  M++SK+   T+    + ++   +     E   FP
Sbjct: 1013 HIIGGMIISKKLFSTKNNEMMAFINIEDLYGSMEVVVFP 1051


>gi|163795645|ref|ZP_02189611.1| DNA polymerase III, alpha subunit [alpha proteobacterium BAL199]
 gi|159179244|gb|EDP63777.1| DNA polymerase III, alpha subunit [alpha proteobacterium BAL199]
          Length = 1162

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 509/1049 (48%), Positives = 686/1049 (65%), Gaps = 27/1049 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  F+HL+VHS YSL EGA+    ++     ++ PA+++TD+ NLF ALEFS  A  
Sbjct: 1    MSHA-DFIHLRVHSVYSLAEGAIHAKQLVKLAKQNRMPAVSMTDSGNLFGALEFSVTAAG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP--SIVLLVSTAEGYQRLIELVSRMYLL 122
             G+QPI+G QL +                  VP   ++LLV +  GY+ L+ +VSR Y+ 
Sbjct: 60   EGVQPIVGVQLAVRRPAEPDRRGLRVVAGRDVPPDQLLLLVQSEVGYRNLMGIVSRAYME 119

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
              G++  ++ L  L E  TEGLI LT G  G + R         AE  L   ++LF DRL
Sbjct: 120  TSGEEEPQVALDEL-EGHTEGLIALTAGLRGGMGRLLLEGRDSDAESVLQHLQRLFPDRL 178

Query: 183  YVNLQRHRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            YV LQRH   D  R   +++ LAY  ++PLVATN   F  E+ +EA DVL+ +A ST + 
Sbjct: 179  YVELQRHFLEDENRIEGRLIDLAYARKIPLVATNEVFFADEDMHEAQDVLLCIAGSTTIG 238

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
               R R+TP H  K+  EM  +F+DLPEA++NTV +ARRC+++ +   PILPRF  +   
Sbjct: 239  NPKRRRLTPHHRFKSSQEMRELFADLPEAVDNTVVVARRCAYMPRKLDPILPRFETEGG- 297

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAI-------AKGYHAQDYRQRLDFELNVIARMKFS 354
               + E  ELR +A AGL  RL    +             + Y  RL  EL VI +M F 
Sbjct: 298  ---RSEAEELRAQAEAGLRARLDAHVLSAETPDDKHAEITRPYWDRLAMELGVIEQMGFP 354

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV+DFI+WAK  NIPVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+S
Sbjct: 355  GYFLIVSDFIKWAKAQNIPVGPGRGSGAGSLVAYSLLITDLDPLRWGLLFERFLNPERVS 414

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFDIDFCQDRRDEVIRYVQ+KYG +RVAQIITFG LQA+AALRDVGR L+MPY QVDR
Sbjct: 415  MPDFDIDFCQDRRDEVIRYVQDKYGRDRVAQIITFGKLQARAALRDVGRVLEMPYGQVDR 474

Query: 475  LCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            +CKL+PN+PA+PV+  QA+  +   R  R AD +V  L+ I+ +LEG+YR++STHAAG+V
Sbjct: 475  ICKLVPNNPANPVTLAQAVTTEEELRRQRNADENVANLIRIALQLEGMYRNSSTHAAGVV 534

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            IGDRPLS+LVP+YRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT+LQ+++D L + G
Sbjct: 535  IGDRPLSELVPLYRDPRSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLQRAVDLLKEGG 594

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            + +DL+ IP +D  TY +L    + G+FQLESSGMR  L  ++PD  EDIIALV+LYRPG
Sbjct: 595  IALDLAKIPLEDEATYTMLARGESTGVFQLESSGMRDVLRRLRPDRFEDIIALVALYRPG 654

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+ NI  Y   K+G E+   +HP ++P+L ET G++IYQEQV Q AQLLSGY+L  AD+L
Sbjct: 655  PMANIPKYIACKHGDEQPDYMHPKLEPVLNETFGIMIYQEQVQQAAQLLSGYTLGGADLL 714

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKKIKEEMD Q+ERF+SGA  NG+ +  A  IF+ +A FA YGFNKSHAAAYA+++
Sbjct: 715  RRAMGKKIKEEMDAQRERFVSGAVDNGVDQGQASGIFDQIAAFAGYGFNKSHAAAYALVA 774

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD- 832
            YQTA++K ++PVEFLAASMT +M N +K+  F Q+ ++  I ++PP +N    DF V   
Sbjct: 775  YQTAYLKANHPVEFLAASMTYDMGNTDKLNTFRQELQKLRIPLLPPDINRSRRDFAVERM 834

Query: 833  ----NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                  I Y+LAA+K VG      ++ A  AD+ F SL DF  R D +++N+R+LE+LV 
Sbjct: 835  PDGTMAIRYALAAVKNVGGAAMDALVSARDADRAFKSLGDFADRADPQQVNKRLLENLVK 894

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGA D    +R +L +SL+ + ++       R +   N+FA + G    ++ L+      
Sbjct: 895  AGAFDGLHPNRAELFESLETVVRHVSAAASERGSSQVNLFAVDGGREPTRLRLKDRPDWP 954

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG----YEESVATIRGNNIRLAAMVVS 1003
               R + E   LGFY S HPLD Y   L ++ +      + E+ A      + LA +VV 
Sbjct: 955  PMERLKEEFDALGFYLSAHPLDAYAESLGRLSVVPSDRAFAETRAKGGSTRLTLAGIVVG 1014

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            KQ + ++ G+R  +V  ++    +E   F
Sbjct: 1015 KQIRTSKSGNRFAFVQLTDRTGVFEVTLF 1043


>gi|331671690|ref|ZP_08372488.1| DNA polymerase III subunit alpha [Escherichia coli TA280]
 gi|331071535|gb|EGI42892.1| DNA polymerase III subunit alpha [Escherichia coli TA280]
          Length = 1160

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1047 (40%), Positives = 619/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 286  MSTEDYLVMRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|289825701|ref|ZP_06544869.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. E98-3139]
          Length = 1063

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++
Sbjct: 110  GAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +   
Sbjct: 169  ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|75676051|ref|YP_318472.1| DNA polymerase III subunit alpha [Nitrobacter winogradskyi Nb-255]
 gi|74420921|gb|ABA05120.1| DNA polymerase III, alpha subunit [Nitrobacter winogradskyi Nb-255]
          Length = 1168

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 529/1040 (50%), Positives = 706/1040 (67%), Gaps = 15/1040 (1%)

Query: 1    LTQYLEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
            +TQ    +P+ FVHL VHS+YSLL+G++ +  + +   AD QPA+A+TDT+N+F ALEFS
Sbjct: 1    MTQKTLAAPAGFVHLHVHSAYSLLKGSIKIQKLAELARADHQPALALTDTDNMFGALEFS 60

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
             K    GIQPI+GC+L +D  D          P      IVLL +   GY+ L+ L SR 
Sbjct: 61   DKVAGLGIQPIVGCELAVDFTDQDANARNALPPA----RIVLLATREAGYRNLMRLNSRA 116

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +L      S  +   WL++   EGLI LTGG  GP+ +AF  +   +A  R      +FG
Sbjct: 117  FLETPEHCSPHVNWEWLRDE-NEGLIALTGGPEGPVAQAFNADQPALATARCDRLAGIFG 175

Query: 180  DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            DRLYV LQRH    +R  E  ++ LAY   LPLVATN   F + +DYEAHD L+ +A   
Sbjct: 176  DRLYVELQRHGLDKERRVEGALIDLAYAKGLPLVATNEPYFATSDDYEAHDALLCIAGGR 235

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +V++ DR ++TPDH  K R+EM  +F+D+PEAL +T+EIA RC+F  +   PILP F   
Sbjct: 236  LVAETDREQLTPDHRFKTRAEMAVLFADIPEALSSTMEIAERCAFRPRTRKPILPHFTVA 295

Query: 299  E---CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                  D + +E  ELR +A  GL  RLA   ++ G   QDY  RLDFEL+VI RM ++G
Sbjct: 296  SDAAAADGKNDEAAELRRQAQEGLAKRLAVHGVSTGMTEQDYSARLDFELDVITRMNYAG 355

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI+ AK   IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+SM
Sbjct: 356  YFLIVADFIKHAKSKGIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERISM 415

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQ+RR EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L
Sbjct: 416  PDFDIDFCQERRGEVIDYVQKRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKL 475

Query: 476  CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KL+P +PA PVS  QAI  + + +  R  DP V R  +I+Q+LEGL RHASTHAAGIVI
Sbjct: 476  TKLVPQNPAAPVSLKQAIEGEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVI 535

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
            GDRPLS+LVP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L QRG+
Sbjct: 536  GDRPLSELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRGI 595

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             VDL+ +P DD  +Y +LT    +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPGP
Sbjct: 596  DVDLATLPLDDAASYQMLTQGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGP 655

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + NI  Y  RK+G+E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LR
Sbjct: 656  MANIPTYCARKHGEEEAEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLR 715

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKKI+ EM+KQ+  F++G+  NG+ +  A  IFELLAKFADYGFNKSHAAAYA++SY
Sbjct: 716  RAMGKKIRSEMEKQRAIFVAGSVNNGVPRGQAETIFELLAKFADYGFNKSHAAAYALVSY 775

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA+MK H+PVEFLAASMTL+M N +K+ +F  +A++  I++  PS+N     F+V +  
Sbjct: 776  QTAYMKAHFPVEFLAASMTLDMSNTDKLSEFRAEAQRLGIKVEAPSINRSGATFEVKEGV 835

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I Y+LAA+KGVG      I+EA     F SL DF +RV  + +N+RV+ESL  AGA +  
Sbjct: 836  ICYALAALKGVGAHAVEQIVEARKAGMFTSLADFAARVPPRAINKRVIESLAAAGAFEAL 895

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +R ++    + I    Q   +       ++F       +  I L +      + R   
Sbjct: 896  EPNRARVFAGAEAILAACQRSHEATMIGQNDMFGGLAD--APDIMLPRAEPWLPADRLRR 953

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKG 1012
            E   +GF+ SGHPLD Y   L+++ ++ + E   A   G    ++AA VVS+ +++T+ G
Sbjct: 954  EYEAVGFFLSGHPLDDYATALKRLRVQSWVEFSRAVKSGATAGKVAATVVSRMERRTKTG 1013

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +++G +  S+P+  +EA  F
Sbjct: 1014 NKMGIIGLSDPSGHFEAVLF 1033


>gi|254508656|ref|ZP_05120771.1| putative DNA polymerase IIIalpha subunit subfamily [Vibrio
            parahaemolyticus 16]
 gi|219548413|gb|EED25423.1| putative DNA polymerase IIIalpha subunit subfamily [Vibrio
            parahaemolyticus 16]
          Length = 1159

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1048 (40%), Positives = 615/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFVHLRVHSDFSMVDGLSKVPPLVKKVAELGMPAMALTDFTNLCGLVKFYGTAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG    +          Q       +  + +L +   GY+ L  L+S+ YL   
Sbjct: 60   CGIKPIIGADFAM----------QSAAFGDELTKLTVLAADNTGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I   WL E+ +EGLI+L+GG SG I +A    + + A++    ++  F DR Y+
Sbjct: 110  VQHQPVIDKEWLVEL-SEGLILLSGGKSGEIGKALLKGNQKTAQECAEFYQTHFADRFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        ++ A   ELP+VATN+ +FL E  ++AH++ +A+     +   
Sbjct: 169  ELTRTGRADEESYLHFALEFAEQFELPVVATNDVVFLDETLFDAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL+   EM  +F+D+PEALEN+VEIA+RC+  +++       +       
Sbjct: 229  RRPKNYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPAFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               EE   L  K+  GLE RL         +     +Y +RL  EL VI  M F GYFLI
Sbjct: 284  EGMEETEFLVMKSEEGLEERLEFLFPDPKVRAERRPEYDERLRIELEVINNMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   +    E   AD  V  L+++ + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFKAEPALPELYDADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLAKEGKA 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  +++LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVAIESIPLDDQASFNLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECLRMKLKVLPPDINSGLYR 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+E+   D  F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVDEDGAIVYGIGAIKGVGEGPIEAILESRNRDGHFKDLFDFCARIDLKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            ++AGALD  G  R  ++ SLD+  K A    +       ++F    +     +    K +
Sbjct: 883  IYAGALDRLGPHRAAMMASLDDAVKAASQHHQAEAFGQSDLFGVLTEAPEEVENKYTKVA 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ ++ +V++ 
Sbjct: 943  PWPEKVWLEGERTTLGLYLTGHPINAYLKELGKYTSCRLKDATPTRRDQSVTVSGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|323497991|ref|ZP_08103000.1| DNA polymerase III subunit alpha [Vibrio sinaloensis DSM 21326]
 gi|323317036|gb|EGA70038.1| DNA polymerase III subunit alpha [Vibrio sinaloensis DSM 21326]
          Length = 1159

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1048 (40%), Positives = 612/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL++HS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFVHLRIHSDFSMVDGLSKVPPLVKKVAELGMPAMALTDFTNLCGLVKFYGTAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG    +          Q       +  + +L +   GY+ L  L+S+ YL   
Sbjct: 60   CGIKPIIGADFAM----------QSVEFGDELTKLTVLAADNVGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I   WL E+  EGLI+L+GG SG I +A    + +VA +    ++  F DR Y+
Sbjct: 110  VQHQPVIDKEWLTEL-AEGLIILSGGKSGEIGKALLKGNQKVAHECAEFYQTHFPDRFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        ++ +   ELP+VATN+ + L +  ++AH++ +A+     +   
Sbjct: 169  ELTRTGRADEESYLHFALEFSEQVELPVVATNDVVILDDSTFDAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL++  EM  +F+D+PEALEN+VEIA+RC+  +++       +       
Sbjct: 229  RRPKNYSPQQYLRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPAFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               EE   L  K+  GLE RL         +     +Y  RL  EL VI  M F GYFLI
Sbjct: 284  EGMEETEFLVKKSEEGLEERLEFLFPDPEVRAQRRPEYDDRLKIELEVINNMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   +    E   AD  V  L+++ + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFKAEPALPELYEADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLAREGKD 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVAIESIPLDDQASFSLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E +        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAVSYPDEQWQHDSLKEILEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRATFEEGAVANGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECLRMKLKVLPPDINSGLYR 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA   D  F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVNEDGEIVYGIGAIKGVGEGPIDAILEARNKDGHFKDLFDFCARIDLKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            ++AGALD  G  R  ++ SL++  K A    +       ++F    +     +    K  
Sbjct: 883  IYAGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQSDLFGVLTEAPEEVEHKYTKVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ 
Sbjct: 943  PWPEKVWLEGERTTLGLYLTGHPINAYLKELGKYTSCRLKDATPTRRDQSVTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|170768453|ref|ZP_02902906.1| DNA polymerase III, alpha subunit [Escherichia albertii TW07627]
 gi|170122557|gb|EDS91488.1| DNA polymerase III, alpha subunit [Escherichia albertii TW07627]
          Length = 1160

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1049 (40%), Positives = 620/1049 (59%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++          Q +     +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNV----------QSEPLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++
Sbjct: 110  GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  +A  GLE RLA        +     +Y  RLD EL VI +M F GYFLI
Sbjct: 284  GDMSTEDYLIKRAKEGLEERLAFLFPDEEERLKRRPEYDVRLDTELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +VV+
Sbjct: 943  PWPDQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|320180909|gb|EFW55831.1| DNA polymerase III alpha subunit [Shigella boydii ATCC 9905]
          Length = 1160

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1049 (40%), Positives = 619/1049 (59%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++          Q       +  + +L     GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNV----------QCDLLGDELTHLTVLAVNNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++
Sbjct: 110  GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLI
Sbjct: 284  GDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D      VTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHSVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL N  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGNALKAAGQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|218703438|ref|YP_002410957.1| DNA polymerase III subunit alpha [Escherichia coli UMN026]
 gi|218430535|emb|CAR11401.1| DNA polymerase III alpha subunit [Escherichia coli UMN026]
 gi|284919959|emb|CBG33014.1| DNA polymerase III alpha subunit [Escherichia coli 042]
          Length = 1160

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/1047 (41%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA +  LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 286  MSTEDYLVMRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|153952|gb|AAA27057.1| polymerase III polymerase subunit (dnaE) [Salmonella enterica subsp.
            enterica serovar Typhimurium]
          Length = 1160

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++
Sbjct: 110  GAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +   
Sbjct: 169  ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|37680725|ref|NP_935334.1| DNA polymerase III subunit alpha [Vibrio vulnificus YJ016]
 gi|326423901|ref|NP_760750.2| DNA polymerase III subunit alpha [Vibrio vulnificus CMCP6]
 gi|37199474|dbj|BAC95305.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016]
 gi|319999277|gb|AAO10277.2| DNA polymerase III alpha subunit [Vibrio vulnificus CMCP6]
          Length = 1159

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1048 (40%), Positives = 616/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL++HS +S+++G   +  ++ ++AA   PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFVHLRIHSDFSMVDGINKVPALVKQVAALGMPAMALTDFTNLCGLVKFYGAAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG    +          Q       +  + +L +   GY+ L  L+S+ YL   
Sbjct: 60   NGIKPIIGADFKM----------QSPEFGDELTQLTVLAADNTGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I   WL E+ +EGLI+L+G  +G I +A    + ++ E  +  +++ F DR YV
Sbjct: 110  VQHQPVIDKEWLIEL-SEGLIILSGARNGEIGKALLKGNQKLVESCVDFYQQHFADRFYV 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        ++LA  ++LP+VATN  +F+ +E ++AH++ +A+     +   
Sbjct: 169  ELIRTGRSDEETYLHFAIELAEQYDLPVVATNEVVFIGQELFDAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL+   EM  +F+D+PEALEN+VEIA+RC+  +++       +       
Sbjct: 229  RRPKNYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLWE-----YFLPAFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                E   L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 284  EGMAETEFLVMKSKEGLEERLEFLFPDPEIRAQRRPEYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   +    E   AD  V  L+++ + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFKAEPALPELYEADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYADAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKA 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  ++ +L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVRIESIPLDDPASFRILQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRATFEEGAVKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  + ++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYR 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  +  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVDENGAIVYGIGAIKGVGEGPIDAILEARTKGGHFKDLFDFCARIDLKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            ++AGALD  G  R  L+ SLD+  K A    +       ++F        + +    +  
Sbjct: 883  IYAGALDRLGPHRAALMASLDDAVKAASQHHQAEAFGQADMFGVLTDAPEEVEHKYIQVE 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ LA +V++ 
Sbjct: 943  PWPEKVWLEGERETLGLYLTGHPVNAYLTELNKYTSCRLKDATPTRRDQSLTLAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|28899077|ref|NP_798682.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus RIMD
            2210633]
 gi|260876841|ref|ZP_05889196.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus AN-5034]
 gi|260897273|ref|ZP_05905769.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus Peru-466]
 gi|308125447|ref|ZP_05775347.2| DNA polymerase III, alpha subunit family protein [Vibrio
            parahaemolyticus K5030]
 gi|28807301|dbj|BAC60566.1| DNA polymerase III, alpha subunit [Vibrio parahaemolyticus RIMD
            2210633]
 gi|308085355|gb|EFO35050.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus Peru-466]
 gi|308091396|gb|EFO41091.1| DNA polymerase III subunit alpha [Vibrio parahaemolyticus AN-5034]
 gi|308113977|gb|EFO51517.1| DNA polymerase III, alpha subunit family protein [Vibrio
            parahaemolyticus K5030]
          Length = 1159

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1048 (39%), Positives = 613/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL++HS +S+++G   +  I+ K+A    PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFVHLRIHSDFSMVDGINKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG    +          Q       +  + +L +   GY+ L  L+S+ YL   
Sbjct: 60   SGVKPIIGADFKM----------QSDEFGEELTQLTVLAADNAGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  +WL E+ +EGLI+L+G  +G I +A    + ++ E  +  +K+ F DR Y+
Sbjct: 110  VQHQPVIDRAWLAEM-SEGLIVLSGAKNGDIGKALLKGNRKLVESCVEFYKQHFQDRFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        + LA  H+LP+VATN  +FLS + ++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEETYLHFAIDLAEQHDLPVVATNEVVFLSADLFDAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL+   EM  +F+D+PEALEN+VEIA+RC+  +++               
Sbjct: 229  RRPKNYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               EE   L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 284  EGMEETEFLVMKSREGLEERLEFLFPNEEERKKRRPEYDERLQIELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +       +    E   AD  V  L+++ + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLEKA-FKAEPALPELYEADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP +D  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVRIESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRATFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  + ++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYR 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  +  I Y + AIKGVG      I+EA      F  L DFC+R+D K++N+RV+E L
Sbjct: 823  FNVDENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARIDLKRVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            ++AGALD  G  R  ++ SL++  K A    +       ++F        + +    +  
Sbjct: 883  IYAGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQGDMFGVLTDAPEEVENKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ 
Sbjct: 943  PWPEKVWLEGERETLGLYLTGHPINAYLKELNKYTSCRLKDATPTRRDQSVTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|42528286|ref|NP_973384.1| DNA polymerase III subunit alpha [Treponema denticola ATCC 35405]
 gi|41819556|gb|AAS13303.1| DNA polymerase III, alpha subunit [Treponema denticola ATCC 35405]
          Length = 1149

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1037 (37%), Positives = 581/1037 (56%), Gaps = 28/1037 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS +SLL+GA S+  +  K     Q A+A+TD  N+F A+ F        I+P
Sbjct: 4    DFVHLHVHSDFSLLDGAASVKALAAKAEKLGQTALALTDHGNMFGAINFYNACKEKNIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  +  +   +              ++LL     GY+ L+ L S+ Y  +      
Sbjct: 64   IIGCEFYVAPESRFEKKETPG--GKKYYHLILLAKNETGYRNLMVLCSKGYT-EGMYYKP 120

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            RI    L +   EGLI L+   +G +         + AE  +  ++++FG +  ++ LQ 
Sbjct: 121  RIDDELLAQY-AEGLICLSACLAGELPVLLLNGEKEKAEAHVRKYREIFGAENYFIELQD 179

Query: 189  HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +  + S++ +++A    +PLV TN+  ++ ++DY A D+LM +    + +  +R +
Sbjct: 180  HGLKEEKKASKLLIEMARKVGVPLVLTNDIHYVEQKDYVAQDILMCIGMKKLRTDTNRMQ 239

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + Y K+  EM  +F + PEA+ NTV IA  C+  +    PILP +   E    +  
Sbjct: 240  FEGSEFYFKSGEEMAQLFPEYPEAILNTVRIAEMCNLEIPQPGPILPIYKIPEDFSSK-- 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+ +R+ A  GL+ R             + + RL++EL+++ +M F GYFLIV DFI W
Sbjct: 298  -EDYIRHLAEEGLKKRYP-------VITDEIKNRLNYELDIVIKMDFVGYFLIVWDFINW 349

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N +PVGPGRGSGAGS+ AY+L ITDIDPL+++LLFERFLNP+R+SMPDFD+DFC +R
Sbjct: 350  AKNNGVPVGPGRGSGAGSILAYSLRITDIDPLKYNLLFERFLNPERVSMPDFDVDFCFER 409

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV+ KYG E V QIITFG+L+ KA ++DVGR L +P + V+ + KLIP  P   
Sbjct: 410  RQEVIEYVRQKYGDENVGQIITFGTLKPKAVVKDVGRVLNIPLADVNAITKLIPPKPLTD 469

Query: 487  -----VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                     A+      +E          L EIS  LEG  R++S HAAGIVIG   L+ 
Sbjct: 470  GIKEVTLKYAVDVVPELKEMAEDS-QYKELFEISIALEGRNRNSSLHAAGIVIGKTALTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVDL 598
             VP+Y+D ++    TQF M  IE  GL+K DFLGLKTLTL++ + D + +R     K  +
Sbjct: 529  YVPLYKDSKTGKVATQFTMDLIENCGLVKMDFLGLKTLTLIKHTEDLIHKRGGEWRKFSI 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              I + D ET+ +L+      +FQ ES GM+  L+  +P  +ED+IAL +LYRPGP+D I
Sbjct: 589  GDIDYSDAETFKMLSEGKAAAVFQFESQGMQNILKRAKPSKMEDLIALNALYRPGPMDYI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   K    KI    P ++ +L ET GVI+YQEQVMQ+AQ ++GYSL +AD+LRRAMG
Sbjct: 649  NQFIESKFDNSKIKYPDPCLEDILSETYGVIVYQEQVMQVAQRIAGYSLGQADILRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  E M  +KE+FI GA + G S+  A  IFE+L  FA YGFNKSHAAAY+V+++QTA+
Sbjct: 709  KKKIEVMKTEKEKFIKGAQEKGFSREDADRIFEILIPFAGYGFNKSHAAAYSVLAFQTAY 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYY 837
            +K H+P EF+AA++T E+ + +K+ ++  +A +  ++I+PP VN     F V  D  I +
Sbjct: 769  LKAHFPAEFMAANLTNEITSTDKLPEYIAEAEKMGLKILPPHVNLSDPYFSVSSDGNIIF 828

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L  IKGVG   A  ++E    +  + S  DF  R D    N+R LE ++  G  D  G 
Sbjct: 829  GLLGIKGVGMQAAHELVEEREKNGRYKSFIDFLERNDLHTQNKRNLEVMIKTGCFDGLGQ 888

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R  L+ ++D    YA   ++N +    ++F             EK        +   E+
Sbjct: 889  ERSTLMVNMDGAVAYASQKKENESTGQGSLFEGSGIKEFSDFVFEKIEEFPKKEKLRLEK 948

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             ++GFY SGHPLD Y+ ++                     L  M+   +Q +T+KG+ +G
Sbjct: 949  ELMGFYISGHPLDEYRKVIDNSATLDISHLARATSKKRYVLVGMLTGVRQHQTKKGAMMG 1008

Query: 1017 WVTFSEPAKEYEANFFP 1033
            + TF +     +  FFP
Sbjct: 1009 FGTFEDLNGTLDLVFFP 1025


>gi|288870429|ref|ZP_06114074.2| DNA polymerase III alpha subunit [Clostridium hathewayi DSM 13479]
 gi|288867209|gb|EFC99507.1| DNA polymerase III alpha subunit [Clostridium hathewayi DSM 13479]
          Length = 1171

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1047 (35%), Positives = 561/1047 (53%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +  +  +       ++AITD   ++  ++F + A   GI+P
Sbjct: 13   AFTHLHVHTEYSLLDGSCKIKELTARAKELGMDSMAITDHGVMYGVIDFYRAAREVGIKP 72

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +                     +VLL    +GYQ L+++VS+ + +D      
Sbjct: 73   IIGCEVYVTAGSRFDRETTNGE--DRYYHLVLLAENNQGYQNLMKIVSKGF-VDGFYYKP 129

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+    L+    EG+I L+   +G + R       +  +   L ++++FG+   ++ LQ 
Sbjct: 130  RVDYEVLETYH-EGIIALSACLAGEVQRYIERGMYEQGKNAALRYQQIFGEGNFFLELQD 188

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    ++     +++++    + LVATN+  +   +D   HD+L+ +     V+ ++R R
Sbjct: 189  HGIPAQHTVNQGLMRMSRETGIKLVATNDIHYTFADDATPHDILLCIQTGKKVTDENRMR 248

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y K   EM  +F    EA++NT +IA RC+  ++     LPR+   E  D    
Sbjct: 249  YEGGQYYCKTEEEMRKLFPYASEAIDNTHDIAERCNVEIEFGVTKLPRYDVPEGYD---- 304

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GL                  + RL++ELNVI  M +  YFLIV DFI +
Sbjct: 305  SWGYLNKLCFEGLAKHYPDDDGTL-------KARLEYELNVIHTMGYVDYFLIVWDFIHY 357

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I VGPGRGS AGS+ +Y L IT+IDP+R++LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 358  ARSQDIIVGPGRGSAAGSIVSYCLGITNIDPIRYNLLFERFLNPERVSMPDIDIDFCFER 417

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG E+V QI+TFG+L AK  +RDVGR L MPY++ D + K+IP D    
Sbjct: 418  RQEVIDYVVRKYGKEQVVQIVTFGTLAAKGVVRDVGRVLDMPYARCDAIAKMIPGDLGMT 477

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+      R A   DP V  L+++S +LEGL RH S HAAG+VI    + + VP+ 
Sbjct: 478  LE-KALKQSPDLRNAYNEDPEVKYLIDMSMRLEGLPRHTSMHAAGVVISRTSVDEYVPLS 536

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDD 605
            +        TQF M  +E+ GL+K DFLGL+TLT++Q ++      RGV +D+  I +DD
Sbjct: 537  KAA-DGTITTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVKAVEKNRGVVLDMDTIDYDD 595

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                  + T    G+FQLESSGM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 596  KAVLESIGTGKDDGVFQLESSGMKSFMKELKPQSLEDIIAGISLYRPGPMDFIPKYLKGK 655

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N         P ++P+L  T G I+YQEQVMQI + L+GY++  +D++RRAM KK    M
Sbjct: 656  NDPSSATYDCPQMEPILSPTYGCIVYQEQVMQIVRDLAGYTMGRSDLVRRAMSKKKTSVM 715

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +K+++ F+         G   NGI +  A +I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 716  EKERQNFVYGNPEEGVKGCIANGIDEKTANHIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 775

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YP E++AA +T  MDNV K+ ++    RQ  I I+PP +N     F V    I Y
Sbjct: 776  FLKYYYPQEYMAALLTSVMDNVTKVSEYILSCRQMGISILPPDINEGESGFSVSGGAIRY 835

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+AIK VG +    I+        F S+EDF  R+ +K++N+R LE+ + +GALD    
Sbjct: 836  GLSAIKSVGKSVVDLIVTERESSGLFTSIEDFVDRMSNKEVNKRTLENFIKSGALDTLPG 895

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     +       +KN       +F  A E+     +IT               
Sbjct: 896  TRKQKILVAPELLDQRSKEKKNSMEGQLTLFDIASEEEKTRYQITFPNVGEFPKEELLAF 955

Query: 955  EQRVLGFYFSGHPLDVYKPILR-KMGIKGYE-------ESVATIRGNNIRLAAMVVSKQQ 1006
            E+  LG Y SGHPL+ Y+   R  +     +       E      G+ + +  M+  K  
Sbjct: 956  EKEALGIYVSGHPLEAYETTWRNNITAVTIDFIVDEETEEARVKDGSYVTIGGMITGKTV 1015

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K TR    + ++T  +     E   FP
Sbjct: 1016 KTTRNNKLMAFLTLEDLVGSVEVIVFP 1042


>gi|150019661|ref|YP_001311915.1| DNA polymerase III DnaE [Clostridium beijerinckii NCIMB 8052]
 gi|149906126|gb|ABR36959.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB
            8052]
          Length = 1191

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1077 (35%), Positives = 601/1077 (55%), Gaps = 67/1077 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+G+  +  ++ K       +IAITD   L+  ++F + A    I+PI
Sbjct: 6    FCHLHLHTEYSLLDGSGKIGKLMKKAKELGMKSIAITDHGVLYGLVDFYKAAKENDIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +  +         +    +   +VLLV    GY+ L+++VS   + +      R
Sbjct: 66   LGCEVYVVPKSRHIKQPDKEN---STYHLVLLVKNQIGYENLMKIVSVASI-EGFYYKPR 121

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   +L++  +EGLI L+    G +       + + A++  LT+K++F    Y+ LQ H 
Sbjct: 122  IDYEYLRK-HSEGLIALSACLGGEVQSYHLKGNYEKAKETALTYKEIFNGDFYIELQNHG 180

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
              ++ R   + ++L+    +PLVATN+  ++S+ED  +HDVLM +  +  +    R R  
Sbjct: 181  MEEQKRVNEENIKLSNETGIPLVATNDVHYISKEDSRSHDVLMCIQTAKTIDDPHRRRYP 240

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   YLK+  EM  +FS +PEALENT++IA  CS+  + H   LP+F  +E  D      
Sbjct: 241  SDQFYLKSADEMWDMFSYVPEALENTIKIANECSYEYKFHESKLPKFPLEEGQDPY---- 296

Query: 309  NELRNKAVAGLEVRLA---------------QGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            + LR+    GL  R +               +  +A    A++Y  RL++EL VI +M +
Sbjct: 297  DYLRDTCYKGLIDRYSVFENLRNQNLDYSKIEEVVANYEEAKEYVDRLEYELQVIKQMGY 356

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFLIV DF++++ ++ IP GPGRGS AGS+ AY L IT IDP+++SL+FERFLNP+R+
Sbjct: 357  IDYFLIVWDFVRFSYESGIPTGPGRGSAAGSIVAYTLGITKIDPIKYSLIFERFLNPERV 416

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPD D DFC +RR EVI YV  KYG   V+QIITFG++ A+  +RDVGRA+   Y++VD
Sbjct: 417  SMPDIDSDFCYERRQEVIDYVVEKYGASNVSQIITFGTMAARLCIRDVGRAMNYSYAEVD 476

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            R+ K+IP      +  +A+  +   + A   D  V  L+++S+ LEGL RH+STHAAG+V
Sbjct: 477  RIAKMIPTMLGITIE-KALDLNPELKLAYDTDERVKALIDVSKDLEGLPRHSSTHAAGVV 535

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
            I  +PL + VP+ ++   ++ VTQF M  +E+ GL+K DFLGL+TLT++  ++  + + R
Sbjct: 536  IASKPLVEYVPLQKN--DEMIVTQFGMNTLEELGLLKMDFLGLRTLTVMNDAVKMIKENR 593

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            GV VDL  I F+D E Y+++    T G+FQLES GM   ++ ++PD  EDIIA +SLYRP
Sbjct: 594  GVDVDLDKIDFEDEEVYNMIGEGNTAGVFQLESPGMTSFMKELKPDSFEDIIAGISLYRP 653

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP+  I  Y   K   EK+  +   ++P+L  T G ++YQEQVMQ  + L+GYS+  +D+
Sbjct: 654  GPMAEIPRYIEGKKNSEKVTYLTKELEPILGVTYGCLVYQEQVMQAVRDLAGYSMGRSDM 713

Query: 713  LRRAMGKKIKEEMDKQKERFIS-----------GASKNGISKTIAVNIFELLAKFADYGF 761
            +RRAM KK  + M+++++ FI            G  +NGIS+ IA  IF+ +  FA Y F
Sbjct: 714  VRRAMSKKKHKVMEEERKNFIHGIVENDEVIVPGCVRNGISEEIANKIFDSMMDFASYAF 773

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NKSHAAAYAV+ YQTA++  +YPVE +AA +   M   EK+  +   A +  IQ++PP++
Sbjct: 774  NKSHAAAYAVVGYQTAYLMKYYPVEMIAAMLNSIMGISEKVAYYIGIAEELGIQVLPPNI 833

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRR 880
            N     F V +N+I + LAAIK VGT     I++A  +   F+SL DF +++D   +N+R
Sbjct: 834  NESFSKFTVKENKIRFGLAAIKNVGTNVVASIVKAREEKGKFESLVDFINKMDPSSINKR 893

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             +E L+ AGALD F   R ++L   + +       ++   +   ++FA E+   + ++  
Sbjct: 894  AVECLIKAGALDDFDVFRSKMLAVHEKLIDNISSDKRRNIDGQISLFASEE-LKNPEVNY 952

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-------------- 986
                          E+ + G Y +GHPLD Y   L+        +               
Sbjct: 953  PNIKEFTKRNLLAMEKEMTGLYITGHPLDDYAQSLKMQTTNEISKIFLVQETLDDSLESD 1012

Query: 987  ----------VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                       A    + + L  ++ S  QK TR  S + ++   +     E   FP
Sbjct: 1013 MGEINMFNRQDALQDNDRVILGGILASVNQKVTRNNSIMAFLKLEDLTGTIEVIVFP 1069


>gi|62178801|ref|YP_215218.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Choleraesuis str. SC-B67]
 gi|62126434|gb|AAX64137.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Choleraesuis str. SC-B67]
 gi|322713255|gb|EFZ04826.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Choleraesuis str. A50]
          Length = 1160

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++
Sbjct: 110  GAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +   
Sbjct: 169  ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|237756627|ref|ZP_04585141.1| DNA polymerase III subunit alpha [Sulfurihydrogenibium yellowstonense
            SS-5]
 gi|237691212|gb|EEP60306.1| DNA polymerase III subunit alpha [Sulfurihydrogenibium yellowstonense
            SS-5]
          Length = 1166

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1045 (36%), Positives = 575/1045 (55%), Gaps = 27/1045 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +HS YSLL+G +    +  K A     A+ +TD  N+F A+EF ++    G++P
Sbjct: 4    DFVHLHLHSHYSLLDGMIKPKELAKKAAEYGYKAVGLTDHGNIFGAVEFYEEMRKVGVKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            +IG +         K               ++L      G++ L++L S  Y  +     
Sbjct: 64   LIGMESYFTNNRFEKKGEGSDDILTDKNYHLILFAKDKTGFKNLMKLSSIAYT-EGFYYK 122

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L++   EGLI  T    G +         + A+K     K +FGD LY  +Q 
Sbjct: 123  PRIDWELLEKYH-EGLICQTACLKGFVPNLLAQGKYEEAKKYGKRLKDIFGDDLYFEIQI 181

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV---VSQKD 244
            +   ++      +++LA    + +V TN+S +L+ ED+ AHDV+ A+        +  + 
Sbjct: 182  NGLEEQNIANEGIIRLAKELGVKVVGTNDSHYLNPEDHTAHDVVKALQMKKTLKELYSEG 241

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            +       +     EM   F    E L+NT+EIA +C+  +            K      
Sbjct: 242  KAFRVKGLHFTRPEEMYEKFKGYEEYLKNTMEIAEKCNLEIDTAETRGY-LFPKFETPEG 300

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                      A  GLE RL           ++YR+RLD+E+NVI +M F+ YFLIV DFI
Sbjct: 301  MTPAQYFEKLAREGLEKRLESIKDLTPEKLKEYRERLDYEINVINQMGFAEYFLIVQDFI 360

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +AKKN IPVGPGRGS  GS+ AY L IT++DPLR  LLFERFLNPDR+SMPD D+DFC 
Sbjct: 361  NYAKKNGIPVGPGRGSAGGSLVAYCLRITEVDPLRHGLLFERFLNPDRISMPDIDVDFCM 420

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR++VI YV+ KYG + VAQIITF  +++K  +RDV R L  PY + DR+ K+I   P 
Sbjct: 421  ERREKVIDYVKQKYGEDSVAQIITFNFMKSKMVIRDVARTLGFPYQEADRIAKMILPGPT 480

Query: 485  HPVS---LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
               +    + +     F++    D ++  LL++++KLEG  RH   HAAGIVI   PL +
Sbjct: 481  QGSTLTIDENLEAHPDFKKLYETDENIRELLDLARKLEGSARHTGIHAAGIVIAPGPLDE 540

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
             VP+YRD +     TQF MK +E+ GL+K DFLGLKTLT L      + +R  V VD + 
Sbjct: 541  YVPVYRD-KDGNRATQFEMKTLEQLGLVKMDFLGLKTLTELDYMKKLIKERHGVDVDYNS 599

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +PFDD   + LL +  T G+FQLES GM+  L  ++P  +++IIA+++L+RPGP+ + +V
Sbjct: 600  LPFDDQNVFKLLQSGRTTGVFQLESKGMQDLLVRLKPSNLDEIIAILALFRPGPLMSGMV 659

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  RK+G++ I      +  +LKET G+I+YQEQ+M ++ +LSG++++EAD LR+A+G
Sbjct: 660  DEYIERKHGRKPIEYPFEEVKDILKETYGLIVYQEQIMFMSNILSGFTMAEADTLRKAIG 719

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  E M K K+RFI GA + G SK     +++ + KFA Y FNKSH+ AYA ++Y TAW
Sbjct: 720  KKNPEVMAKMKDRFIGGAVERGFSKEKVEKLWDDIEKFASYSFNKSHSTAYAYLTYWTAW 779

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYY 837
            +KT+YP EF A  ++ E ++ + +     D   FNI+++PP VN    +F + +  +I +
Sbjct: 780  VKTYYPEEFFAVKLSTENNDSKFLNLLL-DMENFNIKLLPPDVNKSMPEFAIEEKSKIRF 838

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+ IKG+G   A+ I+E    + PF  + DFC R D+K  N++VLESL+ AGA D  G 
Sbjct: 839  GLSRIKGIGEEVAKSIVEEREKNGPFVDIFDFCERFDTKVANKKVLESLIKAGAFDFEGI 898

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFENE 955
             R  LL++++      Q    +++    ++FA       + K   E  +      +   E
Sbjct: 899  DRGILLENVEKAITTGQKARDSKSAGQNSLFALTTTPVVNVKHIYEDGTKLTEKEKLRLE 958

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-------RGNNIRLAAMVVSKQQKK 1008
            + VLGFY SGHPL+ YK  L+   +    E + +         G+ +++A ++   + KK
Sbjct: 959  KEVLGFYLSGHPLNAYKKELKNK-VLKISEIIESAFGDKTFQSGSKVKIAGVIDEIKYKK 1017

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            T+ G+ +     S+   + +   FP
Sbjct: 1018 TKSGATMVVFQISDETGQMDVRAFP 1042


>gi|940886|gb|AAC44578.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae C6706]
          Length = 1159

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1048 (40%), Positives = 615/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG    +          Q +     +  + LL     GY+ L  L+S+ YL   
Sbjct: 60   CGVKPIIGADFTL----------QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+
Sbjct: 110  VQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        + +A  ++LP+VATN  +F++EE +EAH++ +A+     +   
Sbjct: 169  ELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++       +       
Sbjct: 229  RRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFL+
Sbjct: 284  GGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLV 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +    IA +   +E   AD  V  L++  + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLEKAFIA-EPELKELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +  +L+   G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILEPPYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     + +   + ++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYR 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V DN  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + AGALD  G  R  ++ S+D+  + A    +       ++F        + +    +  
Sbjct: 883  ILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 VR E E+  LG Y +GHP+D Y   L K       E+  T R  ++  A +V++ 
Sbjct: 943  EWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTAAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   +
Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRLEVMLY 1030


>gi|16759221|ref|NP_454838.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. CT18]
 gi|29140771|ref|NP_804113.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. Ty2]
 gi|213163684|ref|ZP_03349394.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. E00-7866]
 gi|213425957|ref|ZP_03358707.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. E02-1180]
 gi|213648459|ref|ZP_03378512.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. J185]
 gi|25288562|pir||AI0530 DNA polymerase III, alpha chain [imported] - Salmonella enterica
            subsp. enterica serovar Typhi (strain CT18)
 gi|16501512|emb|CAD08689.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Typhi]
 gi|29136395|gb|AAO67962.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Typhi str. Ty2]
          Length = 1160

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++
Sbjct: 110  GAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +   
Sbjct: 169  ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|293403253|ref|ZP_06647350.1| DNA polymerase III alpha subunit [Escherichia coli FVEC1412]
 gi|298378789|ref|ZP_06988673.1| DNA polymerase III subunit alpha [Escherichia coli FVEC1302]
 gi|291430168|gb|EFF03182.1| DNA polymerase III alpha subunit [Escherichia coli FVEC1412]
 gi|298281123|gb|EFI22624.1| DNA polymerase III subunit alpha [Escherichia coli FVEC1302]
          Length = 1162

 Score =  792 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/1047 (41%), Positives = 620/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 4    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 63

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 64   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 113

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 114  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 172

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA +  LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 173  IRTGRPDEESYLHAAVELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 232

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +     
Sbjct: 233  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 287

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 288  MSTEDYLVMRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVM 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 348  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 408  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 467

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 468  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 526

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      
Sbjct: 527  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 586

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 587  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 646

Query: 657  NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 647  SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 706

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 707  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 766

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 767  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 826

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 827  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 886

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 887  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 946

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 947  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1006

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1007 VMVTKRGNRIGICTLDDRSGRLEVMLF 1033


>gi|163801794|ref|ZP_02195691.1| DNA polymerase III subunit alpha [Vibrio sp. AND4]
 gi|159174302|gb|EDP59106.1| DNA polymerase III subunit alpha [Vibrio sp. AND4]
          Length = 1159

 Score =  792 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1048 (39%), Positives = 609/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VHS YS+++G   +  ++ K+A    PA+A+TD  NL   +++   A  
Sbjct: 1    MSD-PKFIHLRVHSDYSMVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGAAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG    +          Q       +  + LL +  EGY+ L  L+S+ YL   
Sbjct: 60   NGVKPIIGADFKM----------QSDEFGEELTQLTLLAANNEGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  +WL E+ +EGLI+L+G  +G I +A    +  VAE  +  +++ F DR Y+
Sbjct: 110  VQHQPVIDKTWLAEL-SEGLIVLSGAKNGEIGKALLKGNRTVAESCVAFYQEYFPDRFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+ A   +LP+VATN  +F+ EE ++AH++ +A+     +   
Sbjct: 169  ELVRTGRPDEETYLHFAVEFANETQLPVVATNEVVFIGEELFDAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P+ YL+   EM  +F+D+PEALEN+VEIA+RC+  +++               
Sbjct: 229  RRPKNYSPEQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               EE + L  K+  GLE RL         +     +Y  RL  EL+VI +M F GYFLI
Sbjct: 284  EGMEETDFLVMKSREGLEERLEFLFPDEEERKQRRPEYDDRLQIELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNSIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +       +    E   AD  V  L++  + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLEKA-FKAEPALPELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             + +  IP  D  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PIQIESIPLVDAASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT +MDN EK+     +  +  + ++PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINAGLYR 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V     I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVDQSGAIVYGIGAIKGVGEGPIDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            ++AGALD  G  R  L+ SL++  K A    +       ++F        + +    +  
Sbjct: 883  IYAGALDRLGPHRAALMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ 
Sbjct: 943  AWPEKVWLEGERETLGLYLTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++GSRIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGSRIGIMTLDDRSGRMEVMLF 1030


>gi|194445238|ref|YP_002039471.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Newport str. SL254]
 gi|194403901|gb|ACF64123.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Newport str. SL254]
          Length = 1160

 Score =  792 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++
Sbjct: 110  GAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +   
Sbjct: 169  ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|197334671|ref|YP_002156775.1| DNA polymerase III subunit alpha [Vibrio fischeri MJ11]
 gi|197316161|gb|ACH65608.1| DNA polymerase III subunit alpha [Vibrio fischeri MJ11]
          Length = 1159

 Score =  792 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1048 (39%), Positives = 612/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS +S+++G   +  ++  +     PA+A+TD  NL   +++   A  
Sbjct: 1    MSE-PKFVHLRVHSDFSMVDGLSKVPPLVKNVGELGMPAMALTDFTNLCGLVKYYFAAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q +     + ++ +L    EGY+ L  L+S  Y    
Sbjct: 60   AGIKPIIGADFKV----------QSQEFGNELFNLTVLAKDNEGYKNLTLLISEAYQRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             + +  +   WL     EGLI+L+GG SG + +A    + ++  + +  ++  F +  Y+
Sbjct: 110  VQHTPVMDKEWLVN-HKEGLILLSGGKSGDVGKALLKGNKELVNECVEFYQTHFPEHYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  F+  +D++AH++ +A+     +   
Sbjct: 169  ELTRTGRADEESYLHFAVELAEKENLPVVATNDVRFIKADDFDAHEIRVAIHDGFTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   YL++  EM  +FSD+PEALEN+VEIA+RC+  +++       +       
Sbjct: 229  RRPKLYSDQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGE-----YFLPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359
               + E+ L  K+  GLE RLA     +        +Y +RL  EL+VI +M F GYFLI
Sbjct: 284  EGMKIEDFLVKKSQEGLERRLAFLFPDEKVRLERRPEYDERLQIELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNAIPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  IDFCMDKRDQVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P+DP   +  +A   + +  E   AD  V  L+++ + LEG  R+A  HA G+VI    +
Sbjct: 464  PSDPGMTL-AKAFEAEPQLPELYNADEEVKALIDMCRILEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPLYCDADGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLEKEGKD 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  +++LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVRIESIPLDDQASFNLLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E++        H  +   L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDATWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRGTFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN +KI     +  +  + ++PP VN+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTDKIIGLVDECFRMKLTVLPPDVNSGLYR 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V     I Y + AIKGVG     +I+EA      F  L DFC+R+D+KK N+RV+E L
Sbjct: 823  FNVDEKGAIVYGIGAIKGVGEGPIENIIEARNKGGHFKDLFDFCARIDTKKTNKRVVEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + AGALD  G  R  L+ SLD+  K A    +  +    ++F    +     +       
Sbjct: 883  IRAGALDRLGPHRAALMASLDDAMKAAGQHHQAESFGQSDMFGVLTQAPEEVEQAYIHVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L +       ++  T R   + +A +V++ 
Sbjct: 943  KWPEKVWLEGERETLGLYLTGHPVNAYIKELSRYTTWRLNDAHVTRRDQTVTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|16763621|ref|NP_459236.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. LT2]
 gi|167990118|ref|ZP_02571218.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|20141337|sp|P14567|DPO3A_SALTY RecName: Full=DNA polymerase III subunit alpha
 gi|16418736|gb|AAL19195.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Typhimurium str. LT2]
 gi|205331368|gb|EDZ18132.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261245463|emb|CBG23253.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Typhimurium str. D23580]
 gi|267991922|gb|ACY86807.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. 14028S]
 gi|312911201|dbj|BAJ35175.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. T000240]
          Length = 1160

 Score =  792 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++
Sbjct: 110  GAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +   
Sbjct: 169  ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|167553355|ref|ZP_02347104.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Saintpaul str. SARA29]
 gi|198243100|ref|YP_002214192.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Dublin str. CT_02021853]
 gi|197937616|gb|ACH74949.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Dublin str. CT_02021853]
 gi|205322170|gb|EDZ10009.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Saintpaul str. SARA29]
          Length = 1160

 Score =  792 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1047 (40%), Positives = 609/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112  AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++       +   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 286  MTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V       +   +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D   I Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|26246130|ref|NP_752169.1| DNA polymerase III subunit alpha [Escherichia coli CFT073]
 gi|227884903|ref|ZP_04002708.1| DNA polymerase III subunit alpha [Escherichia coli 83972]
 gi|81846737|sp|Q8FL05|DPO3A_ECOL6 RecName: Full=DNA polymerase III subunit alpha
 gi|26106527|gb|AAN78713.1|AE016755_213 DNA polymerase III alpha subunit [Escherichia coli CFT073]
 gi|227838041|gb|EEJ48507.1| DNA polymerase III subunit alpha [Escherichia coli 83972]
 gi|307552034|gb|ADN44809.1| DNA polymerase III alpha subunit [Escherichia coli ABU 83972]
 gi|323964923|gb|EGB60389.1| DNA polymerase III [Escherichia coli M863]
 gi|327255163|gb|EGE66766.1| DNA polymerase III subunit alpha [Escherichia coli STEC_7v]
          Length = 1160

 Score =  792 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 429/1049 (40%), Positives = 620/1049 (59%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNIGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++
Sbjct: 110  GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  +A  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +VV+
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|325475361|gb|EGC78546.1| DNA polymerase III [Treponema denticola F0402]
          Length = 1149

 Score =  792 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1037 (38%), Positives = 581/1037 (56%), Gaps = 28/1037 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS +SLL+GA S+  +  K     Q A+A+TD  N+F A+ F        I+P
Sbjct: 4    DFVHLHVHSDFSLLDGAASVKALAAKAEKLGQTALALTDHGNMFGAINFYNACKEKNIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  +  +   +              ++LL     GY+ L+ L S+ Y  +      
Sbjct: 64   IIGCEFYVAPESRFEKKET--PGGKKYYHLILLAKNETGYRNLMVLCSKGYT-EGMYYKP 120

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            RI    L +   EGLI L+   +G +         + AE  +  ++++FG +  ++ LQ 
Sbjct: 121  RIDDELLTQY-AEGLICLSACLAGELPVLLLNGEKEKAEAHVRKYREIFGAENYFIELQD 179

Query: 189  HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +  + S++ +++A    +PLV TN+  ++ ++DY A D+LM +    + +  +R +
Sbjct: 180  HGLKEEKKASKLLIEMARKVGVPLVLTNDIHYVEQKDYVAQDILMCIGMKKLRTDTNRMQ 239

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + Y K+  EM  +F + PE + NTV IA  C+  +    PILP +   E    +  
Sbjct: 240  FEGSEFYFKSGEEMAQLFPEYPETILNTVRIAEMCNLEIPQPGPILPIYKIPEDFSSK-- 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+ +R+ A  GL+ R             + + RL++EL+++ +M F GYFLIV DFI W
Sbjct: 298  -EDYIRHLAEEGLKKRYP-------VITDEIKNRLNYELDIVIKMDFVGYFLIVWDFINW 349

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N +PVGPGRGSGAGS+ AY+L ITDIDPL+++LLFERFLNP+R+SMPDFD+DFC +R
Sbjct: 350  AKNNGVPVGPGRGSGAGSILAYSLRITDIDPLKYNLLFERFLNPERVSMPDFDVDFCFER 409

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV+ KYG E V QIITFG+L+ KA ++DVGR L +P + V+ + KLIP  P   
Sbjct: 410  RQEVIEYVRQKYGDENVGQIITFGTLKPKAVVKDVGRVLNIPLADVNAITKLIPPKPLTD 469

Query: 487  -----VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                     A+      +E     P    L EIS  LEG  R++S HAAGIVIG   L+ 
Sbjct: 470  GIKEVTLKYAVDVVPELKEMAED-PQYKELFEISIALEGRNRNSSLHAAGIVIGKTALTD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVDL 598
             VP+Y+D ++    TQF M  IE  GL+K DFLGLKTLTL++ + D + +R     K  +
Sbjct: 529  YVPLYKDSKTGKVATQFTMDLIENCGLVKMDFLGLKTLTLIKHTEDLIHKRGGEWRKFSI 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              I + D ET+ +L+      +FQ ES GM+  L+  +P  +ED+IAL +LYRPGP+D I
Sbjct: 589  GDIDYSDAETFKMLSEGLAAAVFQFESQGMQNILKRAKPSKMEDLIALNALYRPGPMDYI 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   K    KI    P ++ +L ET GVI+YQEQVMQ+AQ ++GYSL +AD+LRRAMG
Sbjct: 649  NQFIESKFDNSKIKYPDPCLEDILSETYGVIVYQEQVMQVAQRIAGYSLGQADILRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  E M  +KE+FI GA + G S+  A  IFE+L  FA YGFNKSHAAAY+V+++QTA+
Sbjct: 709  KKKIEVMKTEKEKFIKGAQEKGFSREDADRIFEILIPFAGYGFNKSHAAAYSVLAFQTAY 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYY 837
            +K H+P EF+AA++T E+ + +K+ ++  +A +  ++I+PP VN     F V  D  I +
Sbjct: 769  LKAHFPAEFMAANLTNEITSTDKLPEYIAEAEKMGLKILPPHVNLSDPYFSVSSDGNIIF 828

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L  IKGVG   A  ++E    +  + S  DF  R D    N+R LE ++  G  D  G 
Sbjct: 829  GLLGIKGVGMQAAHELVEEREKNGRYKSFIDFLERNDLHTQNKRNLEVMIKTGCFDGLGQ 888

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R  L+ +LD    YA   ++N +    ++F             EK        +   E+
Sbjct: 889  ERSTLMVNLDGAVAYASQKKENESTGQGSLFEGSGIKEFSDFVFEKIEEFPKKEKLRLEK 948

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             ++GFY SGHPLD Y+ ++                     L  M+   +Q +T+KG+ +G
Sbjct: 949  ELMGFYISGHPLDEYRKVIDNSATLDISHLARATSKKRYVLVGMLTGVRQHQTKKGAMMG 1008

Query: 1017 WVTFSEPAKEYEANFFP 1033
            + TF +     +  FFP
Sbjct: 1009 FGTFEDLNGTLDLVFFP 1025


>gi|200387887|ref|ZP_03214499.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Virchow str. SL491]
 gi|199604985|gb|EDZ03530.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Virchow str. SL491]
          Length = 1160

 Score =  792 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++
Sbjct: 110  GAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +   
Sbjct: 169  ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|213865541|ref|ZP_03387660.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. M223]
          Length = 1093

 Score =  792 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1047 (40%), Positives = 609/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112  AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++       +   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 286  MTTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V       +   +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D   I Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|269101954|ref|ZP_06154651.1| DNA polymerase III alpha subunit [Photobacterium damselae subsp.
            damselae CIP 102761]
 gi|268161852|gb|EEZ40348.1| DNA polymerase III alpha subunit [Photobacterium damselae subsp.
            damselae CIP 102761]
          Length = 1159

 Score =  792 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1048 (38%), Positives = 620/1048 (59%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL+VHS +S+++G   +  I+ K +  Q PA+AITD  NL   ++F   A  
Sbjct: 1    MAE-PRFIHLRVHSDFSMIDGLAKVKPIIKKASELQMPALAITDFTNLCGLVKFYYAAHD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q +     +  + +L +  EGY+ L  L+S  Y    
Sbjct: 60   AGIKPIIGADFKV----------QSEELGDELFDLTILAANNEGYKNLTLLISEAYQRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I   WL +   +GLI+L+GG +G + +A    +  + E+ +  ++  F D  Y+
Sbjct: 110  VQHQPVIDKEWLIK-HKDGLILLSGGKTGDVGKALLKGNQNMVEQCVAFYQTYFSDSYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        ++LA   +LP+VATN+   LS + +EAH++ +A+     ++  
Sbjct: 169  ELVRTGRPDEEAYLHFAIELAEKAQLPVVATNDVRLLSADQFEAHEIRVAIHDGYTLADP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +RP+  +   YL++  EM  +F+D+PEALEN+VEIA+RC+  +++       +       
Sbjct: 229  NRPKNYSAQQYLRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L  K+  GLE RL         +     +Y +RL+ EL VI +M F GYFLI
Sbjct: 284  GELSTEDFLVVKSKEGLEERLEFLFPDPDIRAERRPEYDERLEVELEVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMDKRDQVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   + + +++  +D  V  L+++ + LEG+ R+A  HA G+VI    +
Sbjct: 464  PAEPGMTL-AKAFDAEPQLQQSYDSDEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPLYCDAEGHHPVTQFDKNDVESAGLVKFDFLGLRTLTIIDWALGMINPRLEAQGED 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V+++ IP  D +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PVNIAAIPMADQKSFTMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E +        H  +  +L  T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAVSYPDEKWQHESLKDILDPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F +GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRAVFEAGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +KI     +  +  ++++PP VN     
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKIIGLVDECHRMKLKLLPPDVNKGLYR 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + A+KGVG     +I+ A  A   F  L DFC+R+D+KK+N+RVLE L
Sbjct: 823  FNVDDQGAIVYGIGAVKGVGEGPIENIIAAREAGGHFKDLFDFCARIDTKKVNKRVLERL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA+D  G +R  ++ SLD+  + A    +       ++F    +     +       
Sbjct: 883  IKSGAMDRLGPNRASMMASLDDAIRAASQHHQAEAFGQTDMFGVLTEAPEEVEHKYANIP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L+       +++  T R     +A +V++ 
Sbjct: 943  EWPDKVWLEGERETLGLYLTGHPINSYLSELKHYTTWRLKDAQPTRRDGAATVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGLLTLDDRSGRMEVMLF 1030


>gi|59712554|ref|YP_205330.1| DNA polymerase III subunit alpha [Vibrio fischeri ES114]
 gi|59480655|gb|AAW86442.1| DNA polymerase III alpha subunit [Vibrio fischeri ES114]
          Length = 1159

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1048 (39%), Positives = 611/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS +S+++G   +  ++ K+     PA+A+TD  NL   +++   A  
Sbjct: 1    MSE-PKFVHLRVHSDFSMVDGLSKVPPLVKKVGELGMPAMALTDFTNLCGLVKYYFAAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG    +          Q +     + ++ +L    EGY+ L  L+S  Y    
Sbjct: 60   AGVKPIIGADFKV----------QSQEFGNELFNLTVLAKNNEGYKNLTLLISEAYQRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             + +  +   WL     EGLI+L+GG SG + +A    + ++  + +  ++  F +  Y+
Sbjct: 110  VQHTPVMDKEWLVN-HKEGLILLSGGKSGDVGKALLKGNKELVNECVEFYQMHFPEHYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  F+  +D++AH++ +A+     +   
Sbjct: 169  ELTRTGRADEESYLHFAVELAEKENLPVVATNDVRFIKADDFDAHEIRVAIHDGFTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   YL++  EM  +FSD+PEALEN+VEIA+RC+  +++       +       
Sbjct: 229  RRPKLYSDQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGE-----YFLPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359
               + E+ L  K+  GLE RLA     +        +Y  RL  EL+VI +M F GYFLI
Sbjct: 284  EGMKIEDFLVKKSQEGLERRLAFLFPDEKVRLERRPEYDDRLQIELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNAIPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  IDFCMDKRDQVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P+DP   +  +A   + +  E   AD  V  L+++ + LEG  R+A  HA G+VI    +
Sbjct: 464  PSDPGMTL-AKAFEAEPQLPELYNADEEVKALIDMCRILEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPLYCDADGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  I  +D  +++LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVRIESISLEDQASFNLLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E++        H  +   L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDATWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRGTFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN +KI     +  +  + ++PP VN+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTDKIIGLVDECFRMKLTVLPPDVNSGLYR 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V     I Y + AIKGVG     +I+EA      F  L DFC+R+D+KK N+RV+E L
Sbjct: 823  FNVDEKGAIVYGIGAIKGVGEGPIENIIEARNKGGHFRDLFDFCARIDTKKTNKRVVEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + AGALD  G  R  L+ SLD+  K A    +  +    ++F    +     +       
Sbjct: 883  IRAGALDRLGPHRAALMASLDDAMKAAGQHHQAESFGQSDMFGVLTQAPEEVEQAYIHVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L +       ++  T R   + +A +V++ 
Sbjct: 943  KWPEKVWLEGERETLGLYLTGHPVNAYIKELSRYTTWRLNDAHVTRRDQTVTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|57233855|ref|YP_182167.1| DNA polymerase III, alpha subunit [Dehalococcoides ethenogenes 195]
 gi|57224303|gb|AAW39360.1| DNA polymerase III, alpha subunit [Dehalococcoides ethenogenes 195]
          Length = 1170

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1038 (36%), Positives = 575/1038 (55%), Gaps = 37/1038 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ +SLL+G   ++ ++ +       A+AITD   +     F ++A  AGI+PI
Sbjct: 2    FCHLHVHTEFSLLDGMCRISQLVARAKELGMEALAITDHGTMHGIPRFYKEAKEAGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +  +   D    T   K        +VLL    +GY  LI+L SR ++ +      R
Sbjct: 62   LGSEFYLAYGDRTAKTAADK----NYYHLVLLAKNNKGYHNLIQLSSRSHI-EGFYYKPR 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L++  +EGL+ L+   SG + R    N    A +  L +KK F +  Y+ +QRH 
Sbjct: 117  IDKELLEKY-SEGLVCLSACPSGEVPRLILENRFDEAREAALWYKKTF-ENYYIEIQRHP 174

Query: 191  GYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     S ++ +A   ++PLVATN++ +L +ED   HD+L+ +  + +VS + R ++ 
Sbjct: 175  MPDLEKINSVLIPMARELDIPLVATNDTHYLDKEDAPYHDLLLCIGTNALVSDEKRMKME 234

Query: 250  PDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D++  K+  EM   + D+P+A+ENT +IA  C+  L      LP           K  +
Sbjct: 235  GDYFYLKSPEEMAEAYQDIPDAIENTAKIAEMCNVSLDFGRLHLPEIDIPAG----KTPD 290

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L +    GL              +Q+   RL +EL+VI   +F+ YFL+  D I++ K
Sbjct: 291  EYLADLCYEGLPKFYPD-------ASQEILDRLKYELDVIKTTEFANYFLVTWDIIRFVK 343

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  +  G  RGS A S+  Y L IT +DP+++ L+FERFLN +R  MPD D+DF  DRR+
Sbjct: 344  EKGLYYG-VRGSAASSIVLYCLGITALDPIKYKLVFERFLNIERKEMPDIDMDFQDDRRE 402

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV  KYG + V+QIITFG+L AKAA+RD GRAL M Y+ VDR+ K+IP      + 
Sbjct: 403  EVIEYVVGKYGRDHVSQIITFGTLGAKAAVRDAGRALGMAYADVDRVAKVIPFSLHMTLD 462

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+ + +  ++    D  V  L++ ++K+EGL RHASTHAAG+VI   PL+  VP+ R 
Sbjct: 463  -KAMEESTELKDMYNQDSVVRNLVDAARKIEGLSRHASTHAAGVVISKDPLTDHVPLQRL 521

Query: 549  VRSDLP---VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
             + +     +TQ+ M+ I K GL+K DFLGL  L +L K+   + +     +D   IP D
Sbjct: 522  SKENNLGLVMTQYTMEDIAKIGLLKMDFLGLVNLNILGKACAVIKEYTGQDIDPLAIPLD 581

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T+G+FQLE +GMR+ ++ ++P    DI A+V+LYRPGP++ I  +   
Sbjct: 582  DVKTFELLAAGETVGVFQLEGTGMRRYIKELKPTVFSDIGAMVALYRPGPMEQIPRFIKS 641

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G E I   HP ++P+L+ET GVI+YQEQV+ IAQ  SGY+L +AD+LR+AMGKKI   
Sbjct: 642  KHGLEPITYPHPALEPILEETYGVIVYQEQVLFIAQTFSGYTLGQADILRKAMGKKIAAV 701

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQK  FI GA KNG +  IA  +F L+  FA Y FNK+HA +YA+I+YQTA++K +YP
Sbjct: 702  MQKQKANFIDGALKNGYTPEIAEEVFALVEPFAGYAFNKAHATSYALIAYQTAYLKANYP 761

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYYSL 839
            VE++ A +    D  EK+     +AR   I+++PP +N   V+F++  N     +I + L
Sbjct: 762  VEYITAYLQAFCDVTEKVVTAVTEARHMGIEVLPPDINRSGVNFEIEQNEDGVKKIRFGL 821

Query: 840  AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            AA+K VG      I+     +  + S+ED C R +   LN+RV+ESLV AGALD  G  R
Sbjct: 822  AAVKNVGVAAVEPIVAERKANGEYLSVEDLCRRAEGSSLNKRVMESLVKAGALDSLG-DR 880

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKH---ENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              LL +L NI   AQ  +K + +      ++F  +       + + +  V  +  + + E
Sbjct: 881  GTLLFNLPNILSLAQREQKLKDSNQTTMFDLFGQQSPMPMPSLEMAESPV-TTREKLQWE 939

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            + ++G + S HP   Y    +++      +    +    + +A MV S +   TR+G   
Sbjct: 940  KELVGIFISEHPFTPYASAAQEVTTALCGQIDEELDNQPVTVAGMVASVRVSATREGKPF 999

Query: 1016 GWVTFSEPAKEYEANFFP 1033
                  +     E   +P
Sbjct: 1000 VMAEIEDLVGRVEVAAWP 1017


>gi|224369575|ref|YP_002603739.1| DnaE [Desulfobacterium autotrophicum HRM2]
 gi|223692292|gb|ACN15575.1| DnaE [Desulfobacterium autotrophicum HRM2]
          Length = 1184

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/1046 (38%), Positives = 604/1046 (57%), Gaps = 24/1046 (2%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             ++    F HL VH+ +SLL+GA+ L+ +L +        +AITD   +F    F++KA 
Sbjct: 1    MMDTPSPFCHLHVHTEFSLLDGAIRLDALLKRCKEFNMDTVAITDHGTMFGTAPFNEKAR 60

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
              GIQPI+GC++ +  +     T +          +VLL    EGY  L +LVS     +
Sbjct: 61   KVGIQPILGCEVYVAPRSIRNKTAEDNKGLN---HLVLLAKDREGYGNLCKLVSIAQF-E 116

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182
                  RI    L +  ++GLI L+    G I +    N   +A      +   FG D  
Sbjct: 117  GFYYKPRIDRELLTKY-SKGLIALSACLKGDIPQKIIHNQMDLAFDSARYYLDTFGEDNF 175

Query: 183  YVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++ +Q++           + +++    +P+VATN+  +LS +   AH+ L+ +     ++
Sbjct: 176  FLEIQKNGMEIQEKVNQGLWEVSKKLSIPMVATNDCHYLSRDHVRAHEALLCIQTGNTLN 235

Query: 242  QKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI---- 296
              +R +  + + Y K+  EM++ F   P A+ENT+ IA+RC+          PR+     
Sbjct: 236  DANRFKFDSDELYFKSADEMIADFKTYPGAIENTLLIAKRCNVEFGEKVYHFPRYTSAQG 295

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSG 355
            EK  +D  +      + +A  G E RL           +  YR+RL +E+ VI  M F G
Sbjct: 296  EKSGEDCVQTAGEIFKRQAQEGFERRLKMLKRKNPNLDEALYRERLAYEIGVILDMGFPG 355

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI++++++NIPVGPGRGS AGS+ AYA+ IT +DP+   L+FERFLNP R+SM
Sbjct: 356  YFLIVADFIRYSREHNIPVGPGRGSAAGSMVAYAMEITALDPIAHGLIFERFLNPSRISM 415

Query: 416  PDFDIDFCQDRRDEVIRYVQNKY-GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            PD D+DFC + RDEV +YV ++Y G + V+QIITFG L+AKA +RDVGRAL +P  +VD 
Sbjct: 416  PDIDVDFCIEGRDEVYKYVIDRYGGADYVSQIITFGKLKAKAVVRDVGRALSVPLPEVDV 475

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            L KLIP         QA+ D  R  E    DP    L++I+  LEGL R ASTHA G+VI
Sbjct: 476  LAKLIP--DNAKNLGQALKDVPRIMELVNQDPVKKELIDIALLLEGLPRQASTHACGVVI 533

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRG 593
             D+PL + +P Y+  +    VTQF+M ++EK GL+KFDFLGL+ LT+++ +LD    Q  
Sbjct: 534  SDKPLVEYLPTYKG-KEGEVVTQFDMNFVEKLGLVKFDFLGLRNLTVIKNTLDLLKKQSK 592

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
               DL  I  DD  TY LL    T G+FQLESSGM++ +  +QP C  DI+ALV+LYRPG
Sbjct: 593  EVPDLLEIDMDDPPTYELLARADTTGVFQLESSGMKELITRLQPACFSDIVALVALYRPG 652

Query: 654  PIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D+ +   Y  RK+G+E +V + P ++P+LKET GVI+YQEQVM+IA +L+ YS+++AD
Sbjct: 653  PLDSGMADSYVERKHGREDVVYLFPQLEPILKETYGVILYQEQVMKIAGVLANYSMADAD 712

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             LR+AMGKKI   M++ +  F+ GA +N +    A  +F+L+ KF  YGFNKSH+AAYA+
Sbjct: 713  GLRKAMGKKIPAMMEEHRGLFLKGAKENNLDGAKAAELFDLMEKFGGYGFNKSHSAAYAL 772

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            I +QTA++K HYP+E++AA MT +M N++ + KF  + R   I ++PP VN     F V 
Sbjct: 773  ICFQTAYLKAHYPLEYMAALMTSDMSNIDSVVKFIDECRNHEINVLPPDVNESESVFTVA 832

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               I + LAA+KG+G+     I+E    + PF S+ DFC RV+  K+N+RVLE+L+  GA
Sbjct: 833  PAAIRFGLAAVKGIGSAAIDSIVEIRSQEGPFTSIYDFCERVNLTKVNKRVLEALIKCGA 892

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK---ITLEKFSVEN 947
             D  G  R Q++  L++   +   +++ + +   ++FA  +G  +      ++      +
Sbjct: 893  FDSTGSKRSQMMAVLEDALDHGNRIQREKADAQMDLFADTEGGEALPLSVPSMPDIPELD 952

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             +     E+  LGFY +GHPLD Y+ +++K      E  V T  G ++R+   +   +  
Sbjct: 953  DNDLLAMEKETLGFYITGHPLDRYEEMIKKFANVNSETLVETPEGQSVRMGGALRPLKIL 1012

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
            KT+KG  + +    +     E   FP
Sbjct: 1013 KTKKGDMMAFAALEDKKGSVEVVIFP 1038


>gi|301156858|emb|CBW16334.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Typhimurium str. SL1344]
 gi|323128551|gb|ADX15981.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhimurium str. 4/74]
          Length = 1160

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1047 (40%), Positives = 609/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112  AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++       +   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 286  MTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V       +   +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D   I Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|24111619|ref|NP_706129.1| DNA polymerase III subunit alpha [Shigella flexneri 2a str. 301]
 gi|30061741|ref|NP_835912.1| DNA polymerase III subunit alpha [Shigella flexneri 2a str. 2457T]
 gi|24050388|gb|AAN41836.1| DNA polymerase III, alpha subunit [Shigella flexneri 2a str. 301]
 gi|30039983|gb|AAP15717.1| DNA polymerase III, alpha subunit [Shigella flexneri 2a str. 2457T]
 gi|281599539|gb|ADA72523.1| DNA polymerase III, alpha subunit [Shigella flexneri 2002017]
          Length = 1160

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1047 (40%), Positives = 618/1047 (59%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLALLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112  AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171  IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 286  MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V  + +RK+G+E+I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREEISYPDVQWQHESLKSVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|168264639|ref|ZP_02686612.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Hadar str. RI_05P066]
 gi|168464204|ref|ZP_02698107.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Newport str. SL317]
 gi|205351568|ref|YP_002225369.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Gallinarum str. 287/91]
 gi|195632694|gb|EDX51148.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Newport str. SL317]
 gi|205271349|emb|CAR36142.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Gallinarum str. 287/91]
 gi|205346919|gb|EDZ33550.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Hadar str. RI_05P066]
 gi|326626595|gb|EGE32938.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Gallinarum str. 9]
          Length = 1160

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+++GG  G + R     +  + E+ +  ++  F DR ++
Sbjct: 110  GAAGPIIERDWLVEL-KEGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +   
Sbjct: 169  ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|168235011|ref|ZP_02660069.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Schwarzengrund str. SL480]
 gi|194737870|ref|YP_002113254.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Schwarzengrund str. CVM19633]
 gi|194713372|gb|ACF92593.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Schwarzengrund str. CVM19633]
 gi|197291671|gb|EDY31021.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Schwarzengrund str. SL480]
 gi|322616055|gb|EFY12972.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 315996572]
 gi|322620838|gb|EFY17698.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 495297-1]
 gi|322623811|gb|EFY20648.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 495297-3]
 gi|322627259|gb|EFY24050.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 495297-4]
 gi|322630566|gb|EFY27330.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 515920-1]
 gi|322638216|gb|EFY34917.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 515920-2]
 gi|322640701|gb|EFY37352.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 531954]
 gi|322645515|gb|EFY42042.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. NC_MB110209-0054]
 gi|322657142|gb|EFY53425.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. CASC_09SCPH15965]
 gi|322657512|gb|EFY53784.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 19N]
 gi|322663832|gb|EFY60032.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 81038-01]
 gi|322666665|gb|EFY62843.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. MD_MDA09249507]
 gi|322672177|gb|EFY68289.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 414877]
 gi|322676512|gb|EFY72583.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 366867]
 gi|322679396|gb|EFY75441.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 413180]
 gi|322686277|gb|EFY82261.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 446600]
 gi|323193457|gb|EFZ78665.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 609458-1]
 gi|323197521|gb|EFZ82656.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 556150-1]
 gi|323201210|gb|EFZ86279.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 609460]
 gi|323209605|gb|EFZ94538.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 507440-20]
 gi|323212143|gb|EFZ96967.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 556152]
 gi|323216448|gb|EGA01174.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. MB101509-0077]
 gi|323223362|gb|EGA07697.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. MB102109-0047]
 gi|323225923|gb|EGA10143.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. MB110209-0055]
 gi|323228536|gb|EGA12665.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. MB111609-0052]
 gi|323236851|gb|EGA20927.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 2009083312]
 gi|323239649|gb|EGA23696.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 2009085258]
 gi|323242304|gb|EGA26333.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. 315731156]
 gi|323249966|gb|EGA33862.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2009159199]
 gi|323252396|gb|EGA36247.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008282]
 gi|323255679|gb|EGA39432.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008283]
 gi|323262884|gb|EGA46434.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008284]
 gi|323265370|gb|EGA48866.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008285]
 gi|323271843|gb|EGA55261.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. IA_2010008287]
          Length = 1160

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++
Sbjct: 110  GAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +   
Sbjct: 169  ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEALENTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSIDEMCELFADIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|56412504|ref|YP_149579.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Paratyphi A str. ATCC 9150]
 gi|197361439|ref|YP_002141075.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Paratyphi A str. AKU_12601]
 gi|56126761|gb|AAV76267.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Paratyphi A str. ATCC 9150]
 gi|197092915|emb|CAR58344.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Paratyphi A str. AKU_12601]
          Length = 1160

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  +GLI+L+GG  G + R     +  + E+ +  ++  F DR ++
Sbjct: 110  GAAGPIIERDWLVEL-KDGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +   
Sbjct: 169  ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I++A      F  L D C+R D+K+LNRRVLE L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKRLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|238784895|ref|ZP_04628895.1| DNA polymerase III subunit alpha [Yersinia bercovieri ATCC 43970]
 gi|238714212|gb|EEQ06224.1| DNA polymerase III subunit alpha [Yersinia bercovieri ATCC 43970]
          Length = 1171

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1049 (38%), Positives = 601/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  
Sbjct: 12   MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHG 70

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    
Sbjct: 71   AGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY 120

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL     EGLI+L+GG  G + +     +    ++ L  +++ F    Y+
Sbjct: 121  GAAGPIIDRDWLIR-HKEGLILLSGGRMGDVGKFILRGNQIQVDQCLEFYQEHFPGSYYL 179

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  F+ E D++AH++ +A+     +   
Sbjct: 180  ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 239

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 240  KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 294

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L  K+  GLE RL         +     +Y +RL+ EL VI +M F GYFLI
Sbjct: 295  GKMSTEDFLVEKSKQGLEERLELLFPDPEVRAQKRPEYDERLEIELKVINQMGFPGYFLI 354

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 355  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 414

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 415  VDFCMEKRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 474

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 475  PPDPGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 533

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R       
Sbjct: 534  TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 593

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 594  PIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 653

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL
Sbjct: 654  LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 713

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 714  GGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSA 773

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    
Sbjct: 774  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 833

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+LE L
Sbjct: 834  FHVNDEGEIVYGIGAIKGVGEGPIEAMLEARKEGGHFKELFDLCARVDTKKLNRRILEKL 893

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+ SL    K A    K       ++F          + +     
Sbjct: 894  IMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQADMFGVLADAPEQVEQSYANVP 953

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 +  + E+  LG Y +GHP+  Y   + +  G +  ++   T RG       +V++
Sbjct: 954  PWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLVIA 1013

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1014 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|49474348|ref|YP_032390.1| DNA polymerase III subunit alpha [Bartonella quintana str. Toulouse]
 gi|49239852|emb|CAF26246.1| DNA polymerase III alpha subunit [Bartonella quintana str. Toulouse]
          Length = 1162

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 583/1033 (56%), Positives = 745/1033 (72%), Gaps = 8/1033 (0%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
               P F+HL+VHS+YSLLEGAL +  I+    +D  PA+AITDTNNLF ALEFSQ   + 
Sbjct: 13   NSPPRFIHLRVHSAYSLLEGALKIPQIIQHAISDAMPAVAITDTNNLFGALEFSQHCFSH 72

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFP-TVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            GIQPIIGCQL ID  D        K   P    SIVLL ++  GY  L+ LVSR YL   
Sbjct: 73   GIQPIIGCQLTIDFGDGNDNPRFVKWRHPFDFCSIVLLAASKIGYAHLVRLVSRAYLDKC 132

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL    +EG+I LTGG  GPI+     +    A +RL+  KK+F DRLYV
Sbjct: 133  DTDPPHIKADWLLS-QSEGIIALTGGRGGPINFCLAEDKKARAVERLIYLKKVFNDRLYV 191

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             LQRH  +DR  E+ +++LAY H +PLVATN + FL+ + YEAHD LMAVA   +VS  D
Sbjct: 192  ELQRHGSFDRKVETALIELAYAHGIPLVATNEAFFLNRKGYEAHDALMAVAEGQIVSNPD 251

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD-- 302
            R RVTPDHYLK + EMV++FSDLPEALEN+VEIA RC     +  PILPRFIE+  D   
Sbjct: 252  RKRVTPDHYLKPQDEMVALFSDLPEALENSVEIALRCHTATPIRKPILPRFIEQSVDSNF 311

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +EE++EL N+A  GL+ RL    +A+GY   DY++RLD+E++VI RM+FSGYFLIV+D
Sbjct: 312  TLEEEDSELLNQAKDGLKRRLETIGLAEGYTIADYQKRLDYEISVITRMQFSGYFLIVSD 371

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDF
Sbjct: 372  FIKWAKVHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRISMPDFDIDF 431

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ+RR+EVI YVQ +YG ++VAQIITFG LQA+A LRDVGR L++PY QVD L KL+P  
Sbjct: 432  CQERREEVIHYVQKRYGRDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLVPAA 491

Query: 483  PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P + V    AI D+ +F E +  DP++ R L+I+ +LEGLYRHASTHAAGIVIGDRPLS+
Sbjct: 492  PGNQVELADAIKDEPKFEEEKKKDPAIGRTLDIALQLEGLYRHASTHAAGIVIGDRPLSE 551

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVP+YRD RS++PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++DF+A++G+K+DLS I
Sbjct: 552  LVPLYRDPRSNMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVARKGIKIDLSHI 611

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P +D  TY ++    T+G+FQ+ESSGMR+AL GM+PD IEDIIALV+LYRPGP++NI +Y
Sbjct: 612  PLNDEATYAMMARGETVGVFQVESSGMRKALIGMRPDRIEDIIALVALYRPGPMENIPIY 671

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            N RK+G+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKKI
Sbjct: 672  NARKHGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRAMGKKI 731

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             EEM KQ+ RF++GA   G+ K  A  IF+LLAKFADYGFNKSHAAAYA+ISYQTA+MK 
Sbjct: 732  HEEMQKQRTRFVNGAVAGGVDKEQANIIFDLLAKFADYGFNKSHAAAYAIISYQTAYMKA 791

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            H+ VEFLAASM+ +M N EK+  F ++A +  I+++ P V T    F+VG N IYYSLAA
Sbjct: 792  HHSVEFLAASMSYDMTNTEKLNDFRREALRLGIEVIAPCVQTSHRLFEVGKNCIYYSLAA 851

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG     HI+    +K F  L+DFC R+D + +N+R +ESLV AGA DCF  +R  L
Sbjct: 852  IKGVGEAVVDHIVACRGNKVFKDLKDFCERIDPRIVNKRAMESLVCAGAFDCFNIAREVL 911

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L SL  +   A  +  N  +   ++F    G     I L + S  + + +   E +V+GF
Sbjct: 912  LASLGTLHARALRIFDNNFSGQVDMFGIAGGLKEPLI-LSQASPWSPAEKLYREFQVIGF 970

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            YFS HPLD Y+ IL K  I+ +      ++G     RLA  VV+KQ +KT+ G ++G + 
Sbjct: 971  YFSAHPLDEYQAILAKKRIQTWVNFANAVKGGATVARLAGTVVAKQVRKTKSGKKMGIIH 1030

Query: 1020 FSEPAKEYEANFF 1032
            FS+ + +YE   F
Sbjct: 1031 FSDTSGQYETILF 1043


>gi|168823099|ref|ZP_02835099.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Weltevreden str. HI_N05-537]
 gi|205340602|gb|EDZ27366.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Weltevreden str. HI_N05-537]
 gi|320084485|emb|CBY94278.1| DNA polymerase III alpha subunit [Salmonella enterica subsp. enterica
            serovar Weltevreden str. 2007-60-3289-1]
          Length = 1160

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+++GG  G + R     +  + E+ +  ++  F DR ++
Sbjct: 110  GAAGPIIERDWLVEL-KEGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +   
Sbjct: 169  ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|260463915|ref|ZP_05812111.1| DNA polymerase III, alpha subunit [Mesorhizobium opportunistum
            WSM2075]
 gi|259030290|gb|EEW31570.1| DNA polymerase III, alpha subunit [Mesorhizobium opportunistum
            WSM2075]
          Length = 1175

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 588/1029 (57%), Positives = 753/1029 (73%), Gaps = 8/1029 (0%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS+YSLLEGAL +  I+     D+ PAIA+TDTNNLF ALEF+QKA   GIQPI
Sbjct: 29   FVHLRVHSAYSLLEGALQIGKIVGHAVKDEAPAIAVTDTNNLFGALEFAQKAVKDGIQPI 88

Query: 71   IGCQLDIDM-QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IGCQ+ +    +N       +   P +  +VLL +T  GY  L+ LVS +YL     ++V
Sbjct: 89   IGCQVALAFSGENSDGQRDRRRQGPEMRPVVLLAATEAGYSNLVRLVSGVYLETPPGEAV 148

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L    T+GLI L+GG  GPI  A   +   +AE RLLT K LFGDRLYV L R 
Sbjct: 149  HLTTETLA-GQTDGLICLSGGPRGPIGNALKEDRRDLAETRLLTLKTLFGDRLYVELDRV 207

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             GYDR  E   ++LAY HELPLVATN + F S +DYEAHD L+A+A  +VV+   R R++
Sbjct: 208  AGYDRVIEHSTIELAYAHELPLVATNEAFFSSRDDYEAHDALIAIAEGSVVAVDTRRRLS 267

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF---IEKECDDIQKE 306
            PD++L+++++M  +F+DLPEA++NT+EIA RCS+  +  +PILPRF      + D  +K 
Sbjct: 268  PDNFLRSQADMAKLFADLPEAIDNTIEIALRCSYYPKTRSPILPRFTGGDTTDKDAAEKA 327

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E  EL  +A  GL+ RLA      GY  + YR+RL+FEL +I +MKF GYFLIVADFI+W
Sbjct: 328  EAEELARQAREGLDARLALHGPTPGYTVEQYRERLEFELGIIEKMKFPGYFLIVADFIKW 387

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IPVGPGRGSGAGS+ AY+ TITDIDPLRFSLLFERFLNPDR+SMPDFDIDFCQDR
Sbjct: 388  AKAQGIPVGPGRGSGAGSLVAYSTTITDIDPLRFSLLFERFLNPDRVSMPDFDIDFCQDR 447

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVIRYVQ KYG ++V QIITFG+LQA+A LRDVGR LQMPY QVD+L K++P +PA+P
Sbjct: 448  REEVIRYVQQKYGRDQVGQIITFGTLQARAVLRDVGRVLQMPYGQVDKLSKMVPQNPANP 507

Query: 487  VS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V    AIA++ RF E    +P V  LL+++QKLEGLYRHASTHAAGIVIGDRPLS+LVPM
Sbjct: 508  VKLADAIANEPRFAEEAEKEPIVQTLLDMAQKLEGLYRHASTHAAGIVIGDRPLSELVPM 567

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            YRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++  + +RG+ +DL+ IP DD
Sbjct: 568  YRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLETAVKLIRRRGIDIDLATIPLDD 627

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +TY +L+    +G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN RK
Sbjct: 628  PDTYSMLSRGEVVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPTYNARK 687

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+E++ SIHP ID ++KETQGVI+YQEQVMQIAQ LSGYSL EAD+LRRAMGKKI+ EM
Sbjct: 688  HGEEEMASIHPKIDHLVKETQGVIVYQEQVMQIAQELSGYSLGEADLLRRAMGKKIRAEM 747

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            DKQ+ERF+SGA + G++K  A  IF+LLAKFADYGFNKSHAAAYAV+SYQTA++K HYPV
Sbjct: 748  DKQRERFVSGAVERGVAKPQADFIFDLLAKFADYGFNKSHAAAYAVVSYQTAYLKAHYPV 807

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EFLAASMTL+M N +K+  F QDA +  I+++ PSV T    F+VG+NRIYYS+AA+KGV
Sbjct: 808  EFLAASMTLDMGNTDKLADFRQDALRLGIEVLAPSVMTSFRAFEVGENRIYYSMAALKGV 867

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G     HI+    +KPF +L DFC RVD K + +RV ESL+ AGALDCFG+ R  +L  +
Sbjct: 868  GDAAVEHIVAVRGEKPFKNLADFCERVDPKIVGKRVFESLIMAGALDCFGHDRAAMLAGV 927

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            + +   A   ++N  +   +IF    G  S  + L       ++ R   E +V+GFY S 
Sbjct: 928  ERMMGLASLAQQNAVSGQADIFGASLGAQSQALNLPATDPWLAADRLHREFQVVGFYLSA 987

Query: 966  HPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            HPLD YK  L+KM ++ + E   A  RG    RLA  V SKQ++KTR G+++G V FS+ 
Sbjct: 988  HPLDEYKAALQKMRVQNWAEFSAAVKRGATAGRLAGTVTSKQERKTRTGNKMGVVAFSDT 1047

Query: 1024 AKEYEANFF 1032
            + +YEA  F
Sbjct: 1048 SGQYEAVLF 1056


>gi|238763963|ref|ZP_04624919.1| DNA polymerase III subunit alpha [Yersinia kristensenii ATCC 33638]
 gi|238697780|gb|EEP90541.1| DNA polymerase III subunit alpha [Yersinia kristensenii ATCC 33638]
          Length = 1171

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1049 (39%), Positives = 600/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  
Sbjct: 12   MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHG 70

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    
Sbjct: 71   AGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY 120

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL +   EGLI+L+GG  G + +     +    +  L  +++ F    Y+
Sbjct: 121  GAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGKFILRGNHTQVDLCLEFYQEHFPGSYYL 179

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  F+ E D++AH++ +A+     +   
Sbjct: 180  ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 239

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 240  KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 294

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RL+ EL VI +M F GYFLI
Sbjct: 295  GDMSTEDFLVEKSKQGLEERLEFLFPDPEVRAQKRPEYDERLEIELKVINQMGFPGYFLI 354

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 355  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 414

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 415  VDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 474

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 475  PPDPGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 533

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R       
Sbjct: 534  TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 593

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 594  PIDIASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 653

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL
Sbjct: 654  LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 713

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 714  GGADMLRRAMGKKNPEEMAKQRSIFEDGAKSQGVEGELAIKIFDLVEKFAGYGFNKSHSA 773

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    
Sbjct: 774  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 833

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+LE L
Sbjct: 834  FHVNDEGEIVYGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKL 893

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+ SL    K A    K       ++F          + +     
Sbjct: 894  IMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVP 953

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 +  + E+  LG Y +GHP+  Y   + +  G    ++   T RG     A +V++
Sbjct: 954  PWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIA 1013

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1014 SRVMVTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|168244999|ref|ZP_02669931.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Heidelberg str. SL486]
 gi|194449006|ref|YP_002044221.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Heidelberg str. SL476]
 gi|194407310|gb|ACF67529.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Heidelberg str. SL476]
 gi|205336213|gb|EDZ22977.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Heidelberg str. SL486]
          Length = 1160

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+++GG  G + R     +  + E+ +  ++  F DR ++
Sbjct: 110  GAAGPIIERDWLVEL-KEGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +   
Sbjct: 169  ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|204926920|ref|ZP_03218122.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Javiana str. GA_MM04042433]
 gi|204323585|gb|EDZ08780.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Javiana str. GA_MM04042433]
          Length = 1160

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++
Sbjct: 110  GAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +   
Sbjct: 169  ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLEGDDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEALENTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSIDEMCELFADIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|168230540|ref|ZP_02655598.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Kentucky str. CDC 191]
 gi|194468770|ref|ZP_03074754.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Kentucky str. CVM29188]
 gi|194455134|gb|EDX43973.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Kentucky str. CVM29188]
 gi|205335161|gb|EDZ21925.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Kentucky str. CDC 191]
          Length = 1160

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1049 (40%), Positives = 610/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+++GG  G + R     +  + E+ +  ++  F DR ++
Sbjct: 110  GAAGPIIERDWLVEL-KEGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +   
Sbjct: 169  ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL    K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGAALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|197265397|ref|ZP_03165471.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Saintpaul str. SARA23]
 gi|197243652|gb|EDY26272.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Saintpaul str. SARA23]
          Length = 1160

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++
Sbjct: 110  GAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATNN  FL  +D++AH++ +A+     +   
Sbjct: 169  ELIRTGRQDEETYLHAAVELAEARGLPVVATNNVRFLESDDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|197251652|ref|YP_002145236.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Agona str. SL483]
 gi|197215355|gb|ACH52752.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Agona str. SL483]
          Length = 1160

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1047 (40%), Positives = 609/1047 (58%), Gaps = 38/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2    SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62   IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F +R ++ L
Sbjct: 112  AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPERYFLEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171  IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++       +   +     
Sbjct: 231  PRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV 
Sbjct: 286  MTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 406  FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      
Sbjct: 525  FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPL 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V       +   +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645  SGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765  ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V D   I Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825  VNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVE 946
            +GA D  G  R  L+ SL +  K A    K       ++F    +     + +       
Sbjct: 885  SGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +
Sbjct: 945  PEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAAR 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+RIG  T  + +   E   F
Sbjct: 1005 VMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|262276512|ref|ZP_06054321.1| DNA polymerase III alpha subunit [Grimontia hollisae CIP 101886]
 gi|262220320|gb|EEY71636.1| DNA polymerase III alpha subunit [Grimontia hollisae CIP 101886]
          Length = 1159

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1048 (39%), Positives = 616/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A +
Sbjct: 1    MSD-PRFIHLRVHSDFSMVDGLGKVPPLVKKVAELGMPAMALTDFTNLCGLVKFYNTAQS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG    +          Q  T    +  I +L +   GY+ L  L+S+ YL   
Sbjct: 60   SGVKPIIGADFKM----------QTDTFGDDLCQITVLAANNAGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I + WL E+  +GLI+L+GG +G + +A    +  +A +    +++ F D  Y+
Sbjct: 110  IQHQPVIDIQWLAEL-KDGLIILSGGKNGDVGKALLKGNMALAAQCAAFYQQHFPDAYYI 168

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     +       V+ A    LP+VATN   FL+ + ++AH++ +A+     +   
Sbjct: 169  ELIRTGRADEEAYLHFAVEFAEEQGLPVVATNEVCFLTPDLFDAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL++  EM  +F D+PEAL NTVEIA+RC+  ++++      +       
Sbjct: 229  RRPKNYSPQQYLRSEEEMCELFQDIPEALANTVEIAKRCNVTVRLNE-----YFLPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               E    L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  EGMEIGEFLIKKSKEGLEERLEFLFPDPEVRAEKRPEYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMDKRDKVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L++  + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLAELYEADEEVRELIDTCRILEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K+   
Sbjct: 523  TDFAPLYCDSEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALSMINPRLEKMGQA 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               +  I  DD  ++ LL    T  +FQLES GM++ ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PVRIDAIKMDDQASFRLLQNAETTAVFQLESRGMKELIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E +        H  +  +L  T G+I+YQEQVMQIAQ+L+GYSL
Sbjct: 643  LQSGMVDNFIDRKHGREAVSYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLAGYSL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRATFEQGAIKNGVDGELAMRIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT +MDN +KI    ++ R+  + I+PP VN     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTADMDNTDKIVGLVEECRRMKLTILPPDVNAGLYR 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y + AIKGVG     +I++A  +   F  L DFC+R+D+KK+N+RV+E L
Sbjct: 823  FNVNEKGEIVYGIGAIKGVGEAPIENIIKAREEGGYFRDLFDFCARIDTKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA+D  G  R  ++ SLD+  K A    +       ++F        + +    K  
Sbjct: 883  IQSGAMDRLGPHRAAMMASLDDALKSASQHHQAEAFGQTDMFGVLTAAPEEVEHKYTKVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L+       E++ AT R     +A +V++ 
Sbjct: 943  PWPDKVWLEGERETLGLYLTGHPINSYVKELKHYITWRLEDAHATKRDVVSTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGILTLDDRSGRMEVMLF 1030


>gi|187935605|ref|YP_001887524.1| DNA polymerase III DnaE [Clostridium botulinum B str. Eklund 17B]
 gi|187723758|gb|ACD24979.1| DNA polymerase III subunit alpha [Clostridium botulinum B str. Eklund
            17B]
          Length = 1203

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1077 (35%), Positives = 596/1077 (55%), Gaps = 66/1077 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +H+ YSLL+G+  +  I+ K       +IAITD   L+  ++F + A   GI+P
Sbjct: 19   DFVHLHLHTGYSLLDGSGKIKEIMAKTKELGMNSIAITDHGVLYGLVDFYKAALEYGIKP 78

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +  +              +   +VLLV    GY+ L+++VS   + +      
Sbjct: 79   ILGCEVYVAGKSMKIKQPDKDN---STYHLVLLVKNEIGYRNLMKIVSTASI-EGFYYKP 134

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+   +L +  +EGLI L+    G +       + + A++  + +K++F +  Y+ +Q H
Sbjct: 135  RVDHEYL-KAHSEGLIALSACLGGEVQSYELKGNYEKAKETAILYKEIFKEDFYLEIQNH 193

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     + ++L+    +PLVATN+  ++ ++ Y++HD+LM +     V   +R R 
Sbjct: 194  GMDEQRKVNEENIKLSKELGIPLVATNDVHYIKKDGYKSHDILMCIQTGKTVDDVNRRRY 253

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+  EM  +FS +PEALENTV+I+++C++  + H   LP+F   + +    E 
Sbjct: 254  PSDQFYLKSPEEMWEMFSYIPEALENTVKISKQCNYEYKFHESKLPKFPLPQGE----EP 309

Query: 308  ENELRNKAVAGLEVRLAQ---------------GAIAKGYHAQDYRQRLDFELNVIARMK 352
             N L+N    GL  R  +                  +K   A++   RL++EL +I +M 
Sbjct: 310  YNYLKNTCYMGLIERYEEFKELRDKDLDYDELDDLKSKNDSAKNLIDRLEYELQIIRQMG 369

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            +  YFLIV DFI++A  N IP GPGRGS AGS+ AY L IT IDP+++SL+FERFLNP+R
Sbjct: 370  YIDYFLIVWDFIKFANDNGIPTGPGRGSAAGSIIAYTLGITKIDPIKYSLIFERFLNPER 429

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPD D DFC +RR EVI YV  KYG + V+QIITFG++ A+A +RDVGRA+   YS+V
Sbjct: 430  VSMPDIDSDFCYERRQEVIDYVVEKYGEDNVSQIITFGTMAARACIRDVGRAMNYSYSEV 489

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            D++CK+IP      +  +A+  +   +E    D  V  L+++S+ LEGL RH+STHAAG+
Sbjct: 490  DKICKMIPTMLGITIE-KALDFNPELKEIYDKDERVKSLIDMSKDLEGLPRHSSTHAAGV 548

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
            VI   PL Q VP+ ++   ++ VTQF M  +E+ GL+K DFLGL+TLT++ ++L  + + 
Sbjct: 549  VIASTPLVQYVPLQKN--DEMIVTQFGMTTLEELGLLKMDFLGLRTLTVMNEALKIIKEN 606

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            R + +DL  I F+D E Y ++    T G+FQLES GM   ++ ++PD +EDIIA +SLYR
Sbjct: 607  RNIDIDLDKIDFEDKEVYKMIGEGKTAGVFQLESPGMVSFMKELKPDSLEDIIAGISLYR 666

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+  I  Y   K   EK+    P ++ +L  T GV++YQEQVM+I + L+GYS+  +D
Sbjct: 667  PGPMAEIPRYIECKRNPEKVKYDAPELEEILDVTYGVMVYQEQVMEIVRKLAGYSMGRSD 726

Query: 712  VLRRAMGKKIKEEMDKQKERFIS-----------GASKNGISKTIAVNIFELLAKFADYG 760
            ++RRAM KK  + M+++++ FI            G  +NGIS+  A  IF+ +  FA Y 
Sbjct: 727  MVRRAMSKKKHKVMEEERKNFIHGIIENDEVVVPGCIRNGISEEAANKIFDNMMDFASYA 786

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSHAAAYAV+ YQTA++  +YPVE +AA +   M + EK+  +   A +  IQ++PP 
Sbjct: 787  FNKSHAAAYAVVGYQTAYLMKYYPVEMIAAMLNSFMGSSEKVVYYISKAEELGIQVLPPD 846

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNR 879
            +N     F V    I + LAAIK VG      +++   +   FDSL DF S++D   +N+
Sbjct: 847  INESFAKFAVKGETIRFGLAAIKNVGMNLINSVVKTRENKGKFDSLFDFISKIDLSAINK 906

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            R +ESL+ +G  D F   R +LL   + +        K   +   ++FA +   +  +I 
Sbjct: 907  RTIESLIKSGTFDSFKIYRSKLLAVYEKMVDSISSDRKRNIDGQISLFASD-DIYVPEIE 965

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG------IKGYEESVA----- 988
                +  +       E+ + G Y SGHPLD Y   L+         I  + E +      
Sbjct: 966  YPNINEFDKRSLLTMEKEMTGLYISGHPLDDYAQSLKFQTSNEIGKIFSHHELLDDTLEI 1025

Query: 989  ------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                            + + L  ++    +K TR  + + ++   +     E   FP
Sbjct: 1026 QMLDDVINNESGINDNDRVILGGILTQVNKKVTRNNTIMAFLQLEDLTGTIEVIVFP 1082


>gi|317046997|ref|YP_004114645.1| DNA polymerase III subunit alpha [Pantoea sp. At-9b]
 gi|316948614|gb|ADU68089.1| DNA polymerase III, alpha subunit [Pantoea sp. At-9b]
          Length = 1160

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1049 (40%), Positives = 614/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL+VHS YS+++G      ++ K AA   PAIAITD  NL   ++F   A  
Sbjct: 1    MAE-PRFIHLRVHSDYSMVDGLAKTGPLVKKAAALGMPAIAITDFTNLCGLVKFYGTAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG   ++            +     +  + +L +   GYQ L  L+SR Y    
Sbjct: 60   AGVKPIIGADFNV----------VSELMGDELTQLTVLAANNTGYQNLTLLISRAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E   EGLI+L+GG  G + R+    ++ +  + L  +++ F DR Y+
Sbjct: 110  GIAGPVIDRDWLAEY-QEGLILLSGGRRGDVGRSLLRGNNALVAQCLAFYQQHFPDRYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    +P+VATN   FL+EED++AH++ +A+     +   
Sbjct: 169  ELTRTGRPDEEGYLHSAVELAIAEGVPVVATNEVCFLNEEDFDAHEIRVAIHDGYTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++ +EM  +FSD+PEALEN+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEAEMCELFSDIPEALENSVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +    Q+Y +RL+ ELNVI +M F GYFLI
Sbjct: 284  GDMTTEDFLVVKSREGLEERLEFLFPDPAVRAEKRQEYDERLEIELNVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDLVIDHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K  L 
Sbjct: 523  TDFAPLYCDENGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLE 582

Query: 600  L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                  IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIAAIPLDDKKSFDMLQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDIEWQHESLQPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA K G++  +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFQEGAEKMGVNGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYP 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I+EA   D  F  L D C+R D+KK+NRRV+E L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAILEARNRDGYFKELFDLCARTDTKKINRRVMEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL++  K A    K       ++F    +     + +    +
Sbjct: 883  IMSGAFDRLGPHRAALMSSLNDALKAADQHAKAEAIGQADMFGVLAEEPEQVEKSYASVT 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 ++ + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQIQLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKVTVAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARTMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|207855749|ref|YP_002242400.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Enteritidis str. P125109]
 gi|206707552|emb|CAR31826.1| DNA polymerase III, alpha chain [Salmonella enterica subsp. enterica
            serovar Enteritidis str. P125109]
          Length = 1160

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++
Sbjct: 110  GAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +   
Sbjct: 169  ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +FSD+PE+LENTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFSDIPESLENTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|238911297|ref|ZP_04655134.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Tennessee str. CDC07-0191]
          Length = 1160

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+++GG  G + R     +  + E+ +  ++  F DR ++
Sbjct: 110  GAAGPIIERDWLVEL-KEGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +   
Sbjct: 169  ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEALENTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|319404155|emb|CBI77748.1| DNA polymerase III alpha subunit [Bartonella rochalimae ATCC
            BAA-1498]
          Length = 1162

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 582/1030 (56%), Positives = 748/1030 (72%), Gaps = 8/1030 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS+YSLLEGAL +  I+    +D+ PAIAITDTNNLF ALEFSQ   + GIQ
Sbjct: 16   PRFIHLRVHSAYSLLEGALKVKQIIQHAISDRMPAIAITDTNNLFGALEFSQYCFSDGIQ 75

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGCQL ID  D    +   K    +  S IVL  ++  GY  L+ LVSR YL      
Sbjct: 76   PIIGCQLAIDFGDENCNSPLTKLHHSSDYSSIVLFAASETGYSHLVRLVSRAYLDKNDTD 135

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   +L     EG+I LTGG  GPI+ A   +  + A +RL   KK+FGDRLYV LQ
Sbjct: 136  LPHIKADFLLR-HHEGIIALTGGPGGPINSALTEDKKERAIERLTYLKKIFGDRLYVELQ 194

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RH  YDR  E  +++LAYT+E+PLVATN + FL++E Y AHD LMAVA   VVS  +R R
Sbjct: 195  RHGSYDRKVEEALIELAYTYEIPLVATNEAFFLNKEGYAAHDALMAVAEGQVVSNPNRKR 254

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--K 305
            VT DHYLK++ EMVS+FSDLPEALEN+VEIA RC     +  PILP FIE+  D     +
Sbjct: 255  VTSDHYLKSQDEMVSLFSDLPEALENSVEIALRCHAYAPIRKPILPGFIERSADTSSVLE 314

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E  EL ++A AGL++RL    +A+GY   DY QRL++E++VI RM+FSGYFLIV+DFI+
Sbjct: 315  AEAKELLDQAKAGLKMRLETIGLAEGYTIADYEQRLNYEISVITRMQFSGYFLIVSDFIK 374

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQ+
Sbjct: 375  WAKAHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDFCQE 434

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVIRYVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY  VD L KL+P  P  
Sbjct: 435  RREEVIRYVQQKYGCDQVAQIITFGKLQARAVLRDVGRVLEVPYRLVDYLTKLVPATPGS 494

Query: 486  PVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             +   QAI D+ +F E +  DP + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVP
Sbjct: 495  NIELAQAIIDEPKFEEEKKKDPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVP 554

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            MYRD RSD+PVTQFNMK++E++GL+KFDFLGLKTLT+L+ ++DF+A++G KVDLS IP +
Sbjct: 555  MYRDPRSDMPVTQFNMKYVEQSGLVKFDFLGLKTLTVLKMAVDFVARKGTKVDLSHIPLN 614

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY +++   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN R
Sbjct: 615  DEATYAMMSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENISTYNIR 674

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+ +E+I SIHP ID ++KETQGVI+YQEQVMQIAQ L+GYSL EAD+LRRAMGKKI +E
Sbjct: 675  KHKEEEITSIHPKIDHLVKETQGVIVYQEQVMQIAQELAGYSLGEADLLRRAMGKKIHKE 734

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M +Q+ RF+SGA   G+ K  A  IF+LLAKFADYGFNKSHA AYA++SY TA+MK H+P
Sbjct: 735  MQEQRARFVSGAVDGGLDKEQANVIFDLLAKFADYGFNKSHATAYAIVSYHTAYMKAHHP 794

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAASMT +M N +K+  F ++A +  I+++ P V T    F+VG+N IYYSL+A+KG
Sbjct: 795  VEFLAASMTYDMTNTDKLNDFRREALRLGIEVVAPCVQTSHRIFEVGENCIYYSLSAVKG 854

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG     HI+    DKPF  LEDFC R+D + +N+R +ESL++AGA DCF  +R  LL S
Sbjct: 855  VGDMVVDHIVACRGDKPFRDLEDFCERIDPRIVNKRAMESLIYAGAFDCFNVAREVLLAS 914

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L  +   A  +  N ++   +IF    G     I L + S  + + +   E +V+GFYFS
Sbjct: 915  LVTLNARALRILDNNSSGQVDIFEMVGGLKEPLI-LSQASPWSVAEKLHYEFQVIGFYFS 973

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             HPL  Y+ +L K  ++ +    A+++G     RLA  VV+KQ +KT+ G ++G + FS+
Sbjct: 974  AHPLSEYQDVLIKKRVQTWNNFAASVKGGATAARLAGTVVAKQIRKTKSGKKMGVIQFSD 1033

Query: 1023 PAKEYEANFF 1032
             + +YEA  F
Sbjct: 1034 TSGQYEAVIF 1043


>gi|37523503|ref|NP_926880.1| DNA polymerase III subunit alpha [Gloeobacter violaceus PCC 7421]
 gi|35214507|dbj|BAC91875.1| DNA polymerase III alpha subunit [Gloeobacter violaceus PCC 7421]
          Length = 1159

 Score =  790 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1049 (36%), Positives = 592/1049 (56%), Gaps = 41/1049 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V+L  HS YSLL+GA  + +++++    + PAIAITD   ++ A+E  +K  AAG++PI
Sbjct: 3    YVNLHTHSDYSLLDGASQVPDLIERAKGLEMPAIAITDHGVMYGAIELIKKCRAAGLKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ-- 127
            +G +  +   D    + + +         +LL     GY+ L++LV+  +L   QGK   
Sbjct: 63   VGTEGYVINGDIRDKSRRYRR-----YHQILLAKNLTGYKNLVKLVTISHLDGVQGKGIF 117

Query: 128  -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +    L +   EG+I  +    G I +       + A +    +K LFGD  Y+ +
Sbjct: 118  SRPCMNKEMLVQYH-EGIICTSACLGGEIPQLILAGQFEQARRTTQWYKDLFGDDFYLEI 176

Query: 187  QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    DR     VV L     + ++ATN+S F S ED +AHD L+ +    +V +++R
Sbjct: 177  QDHGQREDRVVNVAVVHLGRELGIKVIATNDSHFTSCEDVDAHDALLCIQTGKLVVEENR 236

Query: 246  PRVTPDHYLKNRSEMVSIFSDL------PEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             R T   +LK+  +M  +F D        +AL  T+EIA +     +             
Sbjct: 237  MRYTGTEFLKSAEQMAGMFRDHLSDEVIAQALTTTLEIAEKVEKYDRELLGDSRLPRFPI 296

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                    E+ L      G+  R           A DYR+RL +EL +I +M F+ YFL+
Sbjct: 297  PHG--HTAESYLEQVTWEGMRERFG------SEIAPDYRERLKYELGIIEQMGFATYFLV 348

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D+I++A+ + I VGPGRGS AGS+ AYAL IT+IDP+R++LLFERFLNP+R SMPD D
Sbjct: 349  VWDYIKYARDHGIAVGPGRGSAAGSLVAYALRITNIDPVRYNLLFERFLNPERKSMPDID 408

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
             DFC +RRDE+IRYV  KYG + VAQIITF  L +KA L+DV R L + YS+ D+L KLI
Sbjct: 409  TDFCIERRDELIRYVTEKYGEQYVAQIITFNRLTSKAVLKDVARVLDISYSEADKLAKLI 468

Query: 480  PNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            P     PV L+ +  +      F+++   D  V + +E++ ++EG  +    HAAG+VI 
Sbjct: 469  PVVRGKPVPLKKMISEETPAPEFKQSYEGDERVRKWVELAMRIEGTNKTFGVHAAGVVIS 528

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
              PL +LVP+ R+      +TQ+ M+ I   GL+K DFLGL+ LT++ ++ + + + RGV
Sbjct: 529  SVPLDELVPLQRN-NDGQVITQYYMEDIADLGLLKMDFLGLRNLTMIHRAQELIERYRGV 587

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            ++DL  +P +D  TY LL      GIFQLESSGM+  +  ++P  IEDI ++++LYRPGP
Sbjct: 588  RIDLDNLPLEDSGTYALLGKADLEGIFQLESSGMKAVVRDLRPSNIEDISSILALYRPGP 647

Query: 655  IDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +D   I  + NRK+G++KI  +HPL++P+LKET GV+ YQEQ+M++AQ L GY+L +AD+
Sbjct: 648  LDAGLIPEFINRKHGRKKIEYLHPLLEPILKETYGVLCYQEQIMKVAQELGGYTLGQADL 707

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK +EEM+K +  F+ G++KNG+   +A  +FE +  FA+Y FNKSH+AAY  +
Sbjct: 708  LRRAMGKKKREEMEKHRSIFVDGSAKNGVPSRVADELFEQMVVFAEYCFNKSHSAAYGYV 767

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            ++QTA++K HYPVE++AA ++    + +K++K+        I+I PP +N    DF   +
Sbjct: 768  TFQTAYLKAHYPVEYMAALLSSVKGDQDKVQKYIASCMGMGIEIEPPDINRSGFDFTPQE 827

Query: 833  NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I + L A+K VG    + +++A  +  PF +L + C RVD + +N+R LESL+ AGA 
Sbjct: 828  KSILFGLGAVKNVGEGAIQALLDARDSQGPFKNLANLCDRVDMRVINKRALESLIKAGAF 887

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-------DKITLEKFS 944
            D F  +R QL+  ++ +  +AQ   ++R     N+F    G             +     
Sbjct: 888  DAFSSNRGQLIADMEKVVDWAQDRARDRALGQFNLFDALSGGGDRNPTGYQSAPSAPPTP 947

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                + + + E+ +LGFY S HPL   +   R +      +       + +   A+V   
Sbjct: 948  DLPPADKLKFERELLGFYISDHPLKAVRESARLLAPVNLADLADCRAESTVSAIALVREV 1007

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +   T+KG R+  V   +     EA  FP
Sbjct: 1008 KNVVTKKGDRMAIVQIEDLTGSTEAVVFP 1036


>gi|209695836|ref|YP_002263766.1| DNA polymerase III subunit alpha [Aliivibrio salmonicida LFI1238]
 gi|208009789|emb|CAQ80096.1| DNA polymerase III, alpha chain [Aliivibrio salmonicida LFI1238]
          Length = 1159

 Score =  790 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1048 (39%), Positives = 603/1048 (57%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++  FVHL+VHS +SL++G   +  ++ K+A    PA+ +TD  NL   +++   A  
Sbjct: 1    MSETK-FVHLRVHSDFSLIDGLSKVPPLVKKMAELNMPAMGLTDFTNLCGLVKYYFAAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q       + ++ +L    EGY+ L  L+S+ YL   
Sbjct: 60   AGIKPIIGADFKV----------QSTEFGNELFNLTVLAKNNEGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             + +  +   WL E   EGLI+L+G  +G + +A    + ++  + +  +K  F D  Y+
Sbjct: 110  VQHTPVMDKEWLIE-HKEGLIILSGAKNGDVGKALLKGNQELVNECVDFYKTYFPDHYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  F+  +D++AH++ +A+     +   
Sbjct: 169  ELIRTGRVDEDSYLHFAVDLAEKEGLPVVATNDVCFIKADDFDAHEIRVAIHDGFTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   YL+   EM  +F+D+PEALEN+VEIA+RC+  +++       +       
Sbjct: 229  RRPKNYSSQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359
               + E+ L  K+  GLE RLA     +        +Y +RL  EL+VI +M F GYFLI
Sbjct: 284  EGMKIEDFLVKKSQEGLERRLAFLFPDEKVRLERRPEYDERLQIELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNLIPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDRL KLI
Sbjct: 404  IDFCMDKRDKVIEHVAEIYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRLSKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++ + LEG  R+A  HA G+VI    +
Sbjct: 464  PTDPGMTL-AKAFEAEPQLPELYNADEEVRALIDMCRILEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K    
Sbjct: 523  TDFSPLYCDADGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRREKEGKE 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               +  IP DD  ++ LL    T  +FQLES GM+  ++ +QPD  EDIIALV+L+RPGP
Sbjct: 583  AVRIESIPLDDQASFKLLQNSETTAVFQLESRGMKDLIKRLQPDSFEDIIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     +   H  +   L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDVNWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRGTFKDGAIANGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN +KI     +  +  ++++PP VN     
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTDKIIGLVDECFRMKLKVLPPDVNAGLYR 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG     +I+EA      F  L DFCSR+D+KK N+R++E L
Sbjct: 823  FNVDEDGAIVYGIGAIKGVGEGPIENIIEARNKGGYFRDLFDFCSRIDTKKTNKRIVEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GALD  G  R  L+ S+++  K A    +  +    ++F    +     +       
Sbjct: 883  IRSGALDRLGPHRAALMASVEDAMKAAGQHHQAESFGQSDMFGVLTQAPEEVEQAYTHVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L +       ++  T R   + +A +V++ 
Sbjct: 943  RWPEKVWLEGERETLGLYLTGHPVNAYIKELSRYTTWRLNDAHVTRRDQTVTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++GSRIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGSRIGLMTLDDRSGRMEVMLF 1030


>gi|148255875|ref|YP_001240460.1| DNA polymerase III subunit alpha [Bradyrhizobium sp. BTAi1]
 gi|146408048|gb|ABQ36554.1| DNA polymerase III, alpha subunit [Bradyrhizobium sp. BTAi1]
          Length = 1173

 Score =  790 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 529/1038 (50%), Positives = 706/1038 (68%), Gaps = 15/1038 (1%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL VHS+YSLL+G++ +  + +   AD+QPA+A+TDT+N+F ALEFS K   
Sbjct: 1    MSSA-GFVHLHVHSAYSLLKGSIKIGKLGELAKADRQPALALTDTDNMFGALEFSDKMAG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GIQPI GC+L ID  D +    +          IVLL +  EGY+ L+ L SR +L   
Sbjct: 60   YGIQPIAGCELAIDFGD-MDPNARNAAAVAQPSRIVLLAAREEGYRHLMRLNSRAFLDTP 118

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              Q+  I   WLQE G +GLI LTGG  GPI  A   + + +A +R      LFGDRLY+
Sbjct: 119  THQAPHIKFEWLQE-GVDGLIALTGGPDGPISLAIQHDMAALAGQRCERLASLFGDRLYI 177

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH    +R  E  ++ +AY   LPLVATN   F + +DYEAHD L+ +A   +++  
Sbjct: 178  ELQRHGTDRERRVEGGLIDIAYGKGLPLVATNEPYFATADDYEAHDALLCIAGGHLIADT 237

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR ++TPDH  K R+EM  +F+D+PEAL +TVEIA RCS+  +   PILP F        
Sbjct: 238  DRVQLTPDHRFKTRAEMAVLFADIPEALASTVEIAERCSYRPRTRKPILPFFTVGAGSGA 297

Query: 304  QKEEENE-----LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
               +        L+ +A  GL  RL    +A G   +DY++RL FEL+VI RMK++GYFL
Sbjct: 298  DAVDAASAEAAELKRQAEEGLARRLKVHGMAPGMTEEDYQKRLAFELDVITRMKYAGYFL 357

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV+DFI+WAK + IPVGPGRGSGAGS+ A+ LTITD+DP+RF+LLFERFLNP+R+SMPDF
Sbjct: 358  IVSDFIKWAKAHGIPVGPGRGSGAGSLVAWVLTITDLDPMRFALLFERFLNPERVSMPDF 417

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFCQDRR EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL
Sbjct: 418  DIDFCQDRRGEVISYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKL 477

Query: 479  IPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +P +PA PV+   AI  + + +  R  DP V R  +I+ +LEGL RHASTHAAGIVIGDR
Sbjct: 478  VPQNPAAPVTLAAAIEGEPKLQAFRDEDPVVARAFDIAMRLEGLTRHASTHAAGIVIGDR 537

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            PLS+LVPMYRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L QR V VD
Sbjct: 538  PLSELVPMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRDVHVD 597

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  +Y +L     +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPGP+ N
Sbjct: 598  LATLPIDDAASYQMLARGDVVGVFQVESQGMRRALIDMRPDRFEDIIALVALYRPGPMAN 657

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y  RK+G+E+   +HP+++P+LKET GVIIYQEQVMQ+AQ +SGYSL EAD+LRRAM
Sbjct: 658  IPTYCARKHGEEEAEYLHPILEPILKETFGVIIYQEQVMQVAQQMSGYSLGEADLLRRAM 717

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKKI+ EMDKQ+ RF+ GA KNG+SK  A  IF+LLAKFADYGFNKSHAAAYA++SY TA
Sbjct: 718  GKKIRAEMDKQRVRFVEGAVKNGVSKDQADTIFDLLAKFADYGFNKSHAAAYALVSYHTA 777

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            +MK HYPVEF+AASMTL+++N +K+ +F  +A++  I++ PPS+N     F+V  N I+Y
Sbjct: 778  YMKAHYPVEFIAASMTLDLNNTDKLSEFRAEAQRLGIKVEPPSINRSGPTFEVSGNTIFY 837

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            +LAA+KGVG      I+EA     PF SL DF SRV+ + +N+R++E+L  AGA D    
Sbjct: 838  ALAALKGVGPQAIEMIVEARNKGGPFTSLADFASRVNPRAINKRIIETLAAAGAFDVLDK 897

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R ++    D I    Q   +  T+   ++F +     +  I L        + R   E 
Sbjct: 898  NRARVFAGADAIVAACQRAHEAATSGQNDMFGNAAD--APAIILPNVENWLPAERLRREY 955

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSR 1014
              +GF+ SGHPLD Y   L+++ ++ + E   A   G    ++AA VVS+ +++T+ G++
Sbjct: 956  DAIGFFLSGHPLDDYAAALKRLRVQSWAEFSRAVKTGATAGKVAATVVSRMERRTKTGNK 1015

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            +G +  S+P   +EA  F
Sbjct: 1016 MGIMGLSDPTGHFEAVLF 1033


>gi|198283301|ref|YP_002219622.1| DNA polymerase III subunit alpha [Acidithiobacillus ferrooxidans ATCC
            53993]
 gi|198247822|gb|ACH83415.1| DNA polymerase III, alpha subunit [Acidithiobacillus ferrooxidans
            ATCC 53993]
          Length = 1167

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/1039 (41%), Positives = 625/1039 (60%), Gaps = 33/1039 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++P FVHL VHS YSL +G + +  +  + A    PA+AITD  NLF+ ++F   A  
Sbjct: 1    MMRTPQFVHLHVHSEYSLEDGIIPVKALARRCAERGMPAVAITDHGNLFALVKFYNAARG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++P+IG ++ +      +             S+VLL     GY+ L  L+SR YL   
Sbjct: 61   QGVKPLIGSEVWVHDVAEPERPV----------SLVLLCMDKTGYRNLSRLLSRAYLEGS 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 +I ++WL E  ++GLI L+    G I RA      Q AE R   + +LF +R Y+
Sbjct: 111  RHGRPQIDVAWL-EGSSDGLIALSAAGQGEIGRAL-QRHPQQAESRARYYARLFPERFYL 168

Query: 185  NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR+   ++    Q  V LA   +LPLVATNN+ FL   D+ A D    ++    +   
Sbjct: 169  EVQRNGEAEQEALVQATVALAEKLDLPLVATNNAHFLDAADFAAFDARQCISAGFTLDDP 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP R TP+H L +  EM   F+DLPEA +NTVEIARRC+  L +    LP +       
Sbjct: 229  RRPRRFTPEHRLPDPEEMRERFADLPEACDNTVEIARRCNMELVLGHYALPDYPIP---- 284

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +  +  L + A  GL+ RL +  I        Y +RL  E+ VI +M F GYFLIVAD
Sbjct: 285  ANQSVDEYLHDAAQKGLQERLQELRITGDATLP-YHERLLREVGVIQQMGFPGYFLIVAD 343

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AYAL ITD+DP+   LLFERFLNP+R+SMPDFD+DF
Sbjct: 344  FIQWAKNNGVPVGPGRGSGAGSLVAYALRITDLDPIGNGLLFERFLNPERVSMPDFDVDF 403

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D+RD VI+YV +KYG +RV QIITFG+++A+A +RDVGR L +PY  VD+L KL+P D
Sbjct: 404  CMDQRDRVIQYVADKYGRDRVGQIITFGTMKARAVVRDVGRVLGLPYGFVDQLAKLVPGD 463

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A+ +    R  +  +  V  LL+I+ +LEGL RHASTHA G+VI   PL+  
Sbjct: 464  LGMTL-AKALEESEELRRRQAEEDDVRDLLDIALRLEGLPRHASTHAGGVVISPEPLADR 522

Query: 543  VPMYRD-VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
            +P++ D       VTQ +   +EK GL+KFDFLGL+TLT++  ++  +            
Sbjct: 523  LPLFNDGSEGGGNVTQLDKDDVEKMGLVKFDFLGLRTLTIIDMAVKLINADAAAAGRAPV 582

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+  +P DD  T+ LL +  T  +FQLESSGMR  +  +QPD  EDI+ALV+L+RPGP+ 
Sbjct: 583  DIQQLPLDDAATFALLKSTETAAVFQLESSGMRDLVRRLQPDTFEDIVALVALFRPGPLQ 642

Query: 657  NIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +   +  RK+GK ++  +HP + P+L+ET GVI+YQEQVMQ AQ L+GYSL  AD+LR
Sbjct: 643  SGMVDDFIARKHGKAQVTYLHPDLAPILRETYGVIVYQEQVMQSAQALAGYSLGGADLLR 702

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ+  F+ GA KNG++   A  IF+L+ KFA+YGFNKSH+AAYA++SY
Sbjct: 703  RAMGKKKPEEMAKQRSIFLEGAHKNGLAADQAGAIFDLMEKFAEYGFNKSHSAAYALVSY 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833
            QTA++K HYP  F++A +T +MD+ +K+     +  +  ++I PPSV    ++F+   D+
Sbjct: 763  QTAYLKAHYPQFFMSAVLTADMDHTDKVVAMIAECARMGLRIAPPSVQHSVLEFRPEGDD 822

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I + L AIKG+G    + I++A     F +L D   RVD++K+NRR LE+L+ AGA+D 
Sbjct: 823  HIRFGLGAIKGLGRAAIQAILDARRGGAFLNLFDLLCRVDTQKINRRALEALIRAGAMDD 882

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            +G SR  L+ S+D   + A   + ++ +  E++F+ ++        L      + +    
Sbjct: 883  WGVSRASLIASVDGCMEAAAQFQSSQASLQESLFSGQEA-LRVAPPLVSAEAWSLTETLR 941

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+  LGFY SGHP+D  +  L  +G     +      G+ + +A +VV+++  +T++G 
Sbjct: 942  QERETLGFYLSGHPMDSLRDDLTALGTIPLGDVA---VGSTVLVAGLVVARRSTRTKRGD 998

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            RI ++T  +     E   F
Sbjct: 999  RIYFLTLDDGQGRLEVVVF 1017


>gi|210614801|ref|ZP_03290330.1| hypothetical protein CLONEX_02544 [Clostridium nexile DSM 1787]
 gi|210150570|gb|EEA81579.1| hypothetical protein CLONEX_02544 [Clostridium nexile DSM 1787]
          Length = 1156

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1047 (35%), Positives = 571/1047 (54%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      + AITD   +F  ++F + A AAGI+P
Sbjct: 2    SFAHLHVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMFGVIDFYRAAKAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +        +            +VLL    +GY+ L ++VSR + ++      
Sbjct: 62   ILGCEVYVAPGSRFDKS--SGASEDRYYHLVLLAENQKGYENLTKIVSRGF-VEGYYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+ +  L+E   EG+I L+   +G + +       + A+     ++K+FG    ++ LQ 
Sbjct: 119  RVDMELLEEFH-EGIIALSACLAGEVQKNLHRGMYEEAKAAAFRYEKIFGKGNFFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++     Q+++L+    + LVATN+  +   ED + HD+L+ +     ++ +DR R
Sbjct: 178  HGMQEQANVNQQLLRLSQDTGIELVATNDVHYTYAEDEKPHDILLCIQTGKKLADEDRMR 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  +M ++F    +A+ENT +IA RC   ++     LP++   +       
Sbjct: 238  YEGGQYYVKSEEQMKALFPYALQAIENTQKIADRCHVEIEFGVTKLPKYDVPDG----YT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GLE              ++ R+RL++ELNVI  M +  YFLIV DFI++
Sbjct: 294  SWEYLNKLCYEGLEKNYEN-------PKKELRERLEYELNVIKTMGYVDYFLIVWDFIKY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ ++I VGPGRGS AGS+ +Y L IT+IDP+++ LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 347  ARDHDIMVGPGRGSAAGSIVSYCLGITNIDPIKYQLLFERFLNPERVSMPDIDIDFCFER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RV QI+TFG++ A+  +RDVGR + +PY+ VD + K+IP +    
Sbjct: 407  RQEVIDYVVRKYGSDRVVQIVTFGTMAARGVIRDVGRVMNLPYAFVDSISKMIPTELNMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +S  R+    D  V  L+++S++LEGL RH S HAAG+VI  + + + VP+ 
Sbjct: 467  LD-RALTMNSELRDLYENDEQVKNLIDMSKRLEGLPRHTSMHAAGVVISQKSVDEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                     TQF M  +E+ GL+K DFLGL+TLT++Q ++    +  G  +D+  I +DD
Sbjct: 526  LGS-DGSVTTQFTMTTLEELGLLKMDFLGLRTLTVIQNAVRLAEKSTGKTIDIDHIDYDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                  + T  T GIFQLES+GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 585  KAVLDSIGTGRTDGIFQLESAGMKSFMKELKPQSLEDIIAGISLYRPGPMDFIPQYIKGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N    I    P + P+L+ T G I+YQEQVMQI + L+GY+L  +D++RRAM KK  + M
Sbjct: 645  NDVNAITYDCPQLKPILEPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKKGDVM 704

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K+++ F+         G   NGIS+ +A  I++ +  FA Y FNKSHAAAYAV++YQTA
Sbjct: 705  QKERQNFVYGNEAEGVPGCIANGISEQVANKIYDEMIDFAKYAFNKSHAAAYAVVAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YPVEF+AA MT  +DN  K+ ++    RQ  I+I+PP +N     F V +  I Y
Sbjct: 765  YLKYYYPVEFMAALMTSVIDNPGKVAEYIYSCRQMGIEILPPDINKGEGKFSVDNGNIRY 824

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LAAIK +G      I+     +  F +L+DF  R+  K++N+R +ES + +GA D    
Sbjct: 825  GLAAIKSIGKPVIEAIIAEREKNGLFKNLKDFIERLSGKEVNKRTIESFIKSGAFDSLHG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +     I        K       ++F    E+      I L              
Sbjct: 885  TRKQFMVIYVKILDQVNQERKYSMTGQMSLFDIVDEEQKKEFDIQLPNVGEYEKETMLAF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHP+  Y+   RK       +              G    +  ++ +K  
Sbjct: 945  EKEVLGIYISGHPMQEYEEKWRKNISATTMDFQYDEESGHTKVREGAKEIIGGIITNKTI 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T+    + ++T  +     E   FP
Sbjct: 1005 KHTKTNKTMAFLTIEDLVGTVEVVVFP 1031


>gi|157962689|ref|YP_001502723.1| DNA polymerase III subunit alpha [Shewanella pealeana ATCC 700345]
 gi|157847689|gb|ABV88188.1| DNA polymerase III, alpha subunit [Shewanella pealeana ATCC 700345]
          Length = 1177

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1047 (38%), Positives = 594/1047 (56%), Gaps = 38/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS +S+ +G   +  I+ K+A    PA+A+TD  N+   ++F +    
Sbjct: 22   MSE-PRFVHLRVHSDFSMSDGLSKVKPIIAKVAELGMPAVALTDQTNMCGLVKFYEACHG 80

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG    + +             F    SI  L     GY  L  L+S  YL   
Sbjct: 81   NGVKPIIGTDFWVKVP-----------GFDEFCSITALAMDNTGYSNLTLLISDAYLRGN 129

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL +  +EGLI+L+G   G + RA    +    +  +  +K  F DR Y+
Sbjct: 130  INDKAVIDHEWLAKY-SEGLILLSGAKDGDVGRALLKENQNQVDSLIEFYKTHFPDRYYL 188

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R     + LA   +LP+VATN  +F   E ++AH++ +A+     ++  
Sbjct: 189  ELLRTGRPDEERYLHMAIALAEQKDLPVVATNQVVFNKPEQFDAHEIRVAIYDGFTLADP 248

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   Y K+  EM  +F D+PEA++NTVEIA+RC+  +++H              
Sbjct: 249  RRPKKYSDQQYFKSSDEMCELFEDIPEAIQNTVEIAKRCNATVRLHEYF-----LPNFPT 303

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L + +  GLE RL         +     +Y +RLD EL VI +M F GYFLI
Sbjct: 304  GDLTIEDFLVDVSEKGLEERLEFLFPDPEVRAEKRPEYDERLDIELKVINQMGFPGYFLI 363

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW K N+IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 364  VMEFIQWGKDNDIPIGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 423

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ K+I
Sbjct: 424  VDFCMDRRDEVIDHVADLYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMI 483

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   +   +E+   D  V  L+++ + LEG+ R+A  HA G+VI    +
Sbjct: 484  PAEPGMTL-AKAFEVEPGLQESYDGDEDVKDLIDMCRILEGVTRNAGKHAGGVVIAPTKI 542

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-----LAQRGV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L             
Sbjct: 543  TDFSPIYCDTEGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMVNSVKDKNGEE 602

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +V +  I   D + + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 603  RVRIESISLTDPKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 662

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  +  +L  T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 663  LQSGMVDNFIERKHGREEVSYPDAEYQHESLKELLSPTYGIILYQEQVMQIAQVLAGYTL 722

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F +GA +NG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 723  GGADMLRRAMGKKKPEEMAKQRGTFEAGAIENGVDGPLSMKIFDLVEKFAGYGFNKSHSA 782

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP +F+AA M+ +MDN +KI     +  +  + ++PP VN     
Sbjct: 783  AYALVSYQTLWLKTHYPAQFMAAVMSADMDNTDKIVTLVDECERMGMPLLPPDVNKGLFR 842

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F V D+  I Y + A+KGVG      I++A  + PF  L DFC+R+D KKLNRRV+E L+
Sbjct: 843  FTVDDDLNIVYGIGAVKGVGEGPVDSILKARENGPFIDLFDFCARIDLKKLNRRVIEKLI 902

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945
             AGALD  G  R  ++ +L    + A    K       ++F        D K    + + 
Sbjct: 903  CAGALDNLGPHRAAMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTP 962

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                V  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ +
Sbjct: 963  WPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVVATR 1022

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++GS++G VT  + +   E   F
Sbjct: 1023 VMMTKRGSKMGLVTLDDKSARLEVMLF 1049


>gi|83644688|ref|YP_433123.1| DNA polymerase III subunit alpha [Hahella chejuensis KCTC 2396]
 gi|83632731|gb|ABC28698.1| DNA polymerase III, alpha subunit [Hahella chejuensis KCTC 2396]
          Length = 1158

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1045 (38%), Positives = 607/1045 (58%), Gaps = 40/1045 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F+HL++H+ +SL++G + +  ++ K+A    PA+A+TD +N+   +++ + A  AG++P
Sbjct: 3    DFIHLRIHTEFSLVDGLVKVKPLVKKLADMGMPAVAVTDQSNMCCLVKYYKAASGAGVKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G  + ++  D+                + L      GY+ L EL+SR +   Q     
Sbjct: 63   IVGADVWVENLDDPLAP----------FRLTLFARNETGYRNLTELISRGFTEGQSHGRA 112

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +   W+     EGL+ L+G   G + +A      ++A +RL  + ++F D  Y+ LQR 
Sbjct: 113  IMKKDWIAA-QAEGLLALSGSKYGDVGQALLAGKQELARERLGVWMEMFPDAYYLELQRT 171

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
                D       V+LA     P+VATN+  FL  +D+EAH+  + +     +    R  R
Sbjct: 172  GRINDEECVHASVELALETGCPVVATNDVHFLERDDFEAHEARVCIHEGRTLDDPRRERR 231

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + + YLK   EM  +FSD+PEA+ NTVEIA+RC+  L++    LP +   E   I    
Sbjct: 232  FSEEQYLKTAEEMCELFSDIPEAIANTVEIAKRCNVSLRLGKYFLPNYPIPEGMTI---- 287

Query: 308  ENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +      +  GLE RLA    Q     G   Q Y  RL FEL++I +M F GYFLIV DF
Sbjct: 288  DEFFIKVSEEGLEERLATLLKQDDPEYGNKRQSYYDRLKFELDIITQMGFPGYFLIVMDF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IKWAKNNGVPVGPGRGSGAGSLVAYALKITDLDPLAYDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + RD VI YV   YG   V+QIITFG++ AKA +RDV R    PYS  DRL KLIP + 
Sbjct: 408  MEGRDRVIAYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGRPYSMGDRLSKLIPFEV 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++     ++   RE    D     + E+++KLEG+ R+   HA G+VI    L+   
Sbjct: 468  GMTLAKAYEQEEP-LREYLTTDEDAAEIWEMARKLEGVTRNVGKHAGGVVIAPTKLTDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D      VTQF+   +E+AGL+KFDFLGL+TLT++  ++D + ++        +D+
Sbjct: 527  PLYCDETGSGLVTQFDKDDVEQAGLVKFDFLGLRTLTIVDWAVDIINRQHAEKGQPPLDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD  T++LL    T  +FQLES GM++ +  + PDC EDIIALV+L+RPGP+ + 
Sbjct: 587  NFIPLDDAPTFNLLKHGETTAVFQLESRGMKELIRRLMPDCFEDIIALVALFRPGPLQSG 646

Query: 659  V--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + NRK+G+ ++   HP      + P+L+ T G+I+YQEQVMQIAQ+++GY+L  AD
Sbjct: 647  MVDDFINRKHGRAELAYPHPDYQLESLKPVLQPTYGIILYQEQVMQIAQVMAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQK  F+ G+   G+ + +A  IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  LLRRAMGKKKPEEMAKQKAIFVEGSINQGLEQDLAEKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQTAW+K HYP  F+AA +T +M N +K+    ++ R+  ++++ P VN     F V 
Sbjct: 767  VSYQTAWLKCHYPAPFMAAVLTADMQNTDKVVTLVEECRRMKLELVLPDVNNSSYTFTVD 826

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D  RI Y L A+KG+G    + I++A  +  PF  L DFC RVD +++N+R LE+LV +G
Sbjct: 827  DKHRIVYGLGAVKGLGEGPVQSILDARKEGGPFRDLFDFCQRVDLRRVNKRALEALVRSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVEN 947
            A+D  G SR +++ S++   + A    +N      ++F     +   +     E     +
Sbjct: 887  AMDKLGPSRARMMASINEAVRRADQHSRNEDAGMLDLFGEVVPETDPNPYSATEGMQEWS 946

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
               R + E+  LG Y +GHP D Y+  +R+       E        N+  A +VV+ +  
Sbjct: 947  DKERLKLEKETLGLYLTGHPFDEYEQEVRRFVRTPISELRPGKSPQNV--AGLVVAVRTM 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
            K+++G  IG+ T  + +   E  FF
Sbjct: 1005 KSKRGGYIGFATLDDRSGRIEVTFF 1029


>gi|156935300|ref|YP_001439216.1| DNA polymerase III subunit alpha [Cronobacter sakazakii ATCC BAA-894]
 gi|156533554|gb|ABU78380.1| hypothetical protein ESA_03157 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1160

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/1049 (40%), Positives = 607/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA AITD  NL   ++F   A  
Sbjct: 1    MAE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPAFAITDFTNLCGLVKFYGGAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG   ++  +                  I +L +   GYQ L  L+SR Y    
Sbjct: 60   VGIKPIIGADFNMQCE----------LLGDDFSHITVLAANNTGYQNLTLLISRAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+G EGLI+L+GG  G + +     ++ +AE+ L  +++ F DR Y+
Sbjct: 110  GAAGPWIDQQWLAELG-EGLILLSGGRQGDVGKCLLRGNNVMAEQALAFYQEHFPDRYYL 168

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R     V LA    +P+VATN+  F+   D++AH++ +A+     +   
Sbjct: 169  ELVRTGRPDEERYLHAAVALAEEKGIPVVATNDVRFIEPGDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  YL+   EM  +FSDLPEALEN+VEIARRC+  +++       +   +   
Sbjct: 229  KRPRHYSPQQYLRTEEEMCELFSDLPEALENSVEIARRCNVTVRLGE-----YFLPKFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDFLVMKSKEGLEERLEFLFPDPEIRAQKRPEYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + +E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLQEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K  L 
Sbjct: 523  TDFAPLYCDEMGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKQGLE 582

Query: 600  L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                  IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSIFEDGAKNNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA   D  F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKDGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A ++++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTERGKVTTAAGLIIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|313672076|ref|YP_004050187.1| DNA polymerase iii, alpha subunit [Calditerrivibrio nitroreducens DSM
            19672]
 gi|312938832|gb|ADR18024.1| DNA polymerase III, alpha subunit [Calditerrivibrio nitroreducens DSM
            19672]
          Length = 1154

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1040 (38%), Positives = 606/1040 (58%), Gaps = 29/1040 (2%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            KS  FVHL +HS YSLL+GA+ +N ++DK+      A+A+TD   ++  ++F +KA A  
Sbjct: 2    KSRDFVHLHLHSQYSLLDGAIQINKMMDKLKKFGSSAVAVTDHGTMYGVVDFYKKAIANN 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIGC++ +   D        +        ++LL    +G + L  LVS   L +   
Sbjct: 62   IKPIIGCEVYVAPDDR--KNRNYEKGEDKNYHLILLAKNNKGLKNLQYLVSLAQL-EGFY 118

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
               RI    L +  +EGLI L+   +G I R       + A K    ++ +      Y+ 
Sbjct: 119  YKPRIDKELLAKY-SEGLIGLSACLAGEIPRYVIRGDLKEAVKSAKEYEDILSKGNFYLE 177

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQK 243
            LQ +   ++     +++ +   H++P+VATN+  +L + D+ AH +LM +   T + ++ 
Sbjct: 178  LQENGIPEQRIVNRELISIGKNHDIPIVATNDCHYLEKGDHVAHQILMCIQMQTTISNRD 237

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                 +   Y+K+  EM   FS++PEA  NT++IA  C+  + +    LP +   +    
Sbjct: 238  KLEFHSDQLYVKSPEEMWEAFSEIPEACLNTLKIAEECNVTIDLGKLHLPHYKVPKG--- 294

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                E+   + A  GL  RLA+         + Y  RL+FEL VI    ++GY+LIV DF
Sbjct: 295  -YTVESYFEHLARTGLHRRLARIPAD---EHKKYIDRLNFELKVIIEKNYAGYYLIVWDF 350

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I ++K+N IPVGPGRGSGAGS+ AYAL ITDIDP++F+LLFERFLNP+R SMPDFDIDFC
Sbjct: 351  INYSKENGIPVGPGRGSGAGSLVAYALGITDIDPIKFNLLFERFLNPERKSMPDFDIDFC 410

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            ++RRDEVI+YV +KYG++RVAQI+TFG L A+  +RDVGR L++P   VD++ K+IP  P
Sbjct: 411  KNRRDEVIKYVIDKYGNDRVAQIVTFGQLLARGVIRDVGRVLEIPLKTVDKVAKMIPEAP 470

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +    + DD    +        + LL  ++KLEGL R    HAAGIVI D+PL + V
Sbjct: 471  GMTLEKA-LKDDPDLEKNIKQIEKGEELLTNARKLEGLLRQTGMHAAGIVISDKPLIEYV 529

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-LSLIP 602
            P+ +  ++D  +TQ+    +E+ GL+KFDFLGLK LT++  ++  + +R      ++ IP
Sbjct: 530  PLCKG-QNDEVLTQYEKNTLEEIGLVKFDFLGLKNLTVIDDTVKLIRRRYNNNFDINSIP 588

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVV 660
             +D +TY LL+   T G+FQLES+GM+  L+ ++P+  EDIIALV+LYRPGP     +  
Sbjct: 589  LNDKKTYELLSNGETTGVFQLESAGMKNLLKKLRPNKFEDIIALVALYRPGPIGSGMLDD 648

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  RK+G++K+    P ++P+L++T G+I+YQEQVMQIAQ+++GYSL  AD+LRRAMGKK
Sbjct: 649  FVKRKHGEQKVTYFLPELEPILQDTYGIIVYQEQVMQIAQVIAGYSLGSADLLRRAMGKK 708

Query: 721  IKEEMDKQKERFISG--------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
              EEM K KE F+ G        A K G    IA  IF L+ KFA+YGFNKSH+AAYA+I
Sbjct: 709  KPEEMQKHKEIFLYGSEELKIEGAKKRGFDLKIAEEIFNLMEKFAEYGFNKSHSAAYALI 768

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SYQTA++K HYPVE+++  ++ E+D  EK+  F ++ ++  I+++PP++N    DF + +
Sbjct: 769  SYQTAYLKAHYPVEYMSQLLSSELDKGEKVVVFIEECKRMGIKVLPPTINKSSKDFIIDE 828

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            N I + L AIK VG +    I+ A  D  F S+ DFCSRVD + +N+RV+ESL+  G  D
Sbjct: 829  NSIRFGLGAIKNVGFSAIESIVAAREDGEFKSIYDFCSRVDLRTVNKRVVESLIKTGVFD 888

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
             FG  R  LL  LD   +  Q  +KNR      +     G    +               
Sbjct: 889  EFGKKRKVLLNVLDAAIEEGQRKQKNREIGITTV-EELLGISDTEEYYPDLDEFQEHDIL 947

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+ +LGFY + HPL  Y  IL  + I    E        ++ +  ++ + +    R G
Sbjct: 948  KMEKELLGFYLTNHPLSSYSNILSTLTIGS-NELELMEEEKDVVVGGIIKNIKTHLARTG 1006

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
             ++ +VT  +    ++   F
Sbjct: 1007 EKMAFVTLEDLEGSFDIVVF 1026


>gi|323702832|ref|ZP_08114491.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
            574]
 gi|323532220|gb|EGB22100.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
            574]
          Length = 1189

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1036 (38%), Positives = 598/1036 (57%), Gaps = 44/1036 (4%)

Query: 23   LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82
            ++GA  +     +       A+A+TD   +F A+EF +     GI+PI+GC++ +  +  
Sbjct: 1    MDGATRIKQAARQARESGMNALALTDHGCMFGAVEFYKTCHQEGIKPILGCEVYVAPRS- 59

Query: 83   LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142
              MT++       +  +VLL    EGY+ L++LVS  Y  +      R+    L     +
Sbjct: 60   --MTDRIPKLDDQLYHLVLLAENQEGYKNLLKLVSLGYT-EGFYYKPRVDKQTLARYH-K 115

Query: 143  GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYDRY-RESQV 200
            GLI L+G  +G + +      SQ A +    +  +FG +  ++ LQ H   ++     ++
Sbjct: 116  GLIALSGCVAGEVAQRILSGQSQQARQAARDYVDIFGPNNYFLELQDHGFQEQKTVNREL 175

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSE 259
            +++A   +LPLVATN+  +L  E     DVL+ +     V+   R +  + + YLKN  E
Sbjct: 176  LRIAGDMQLPLVATNDVHYLKREHAYIQDVLLCIQTGKSVNTPGRMKFASQEMYLKNPHE 235

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F ++PEAL NTV IA RC   L+     LP F   E         + LR    AG 
Sbjct: 236  MNLVFGEIPEALTNTVRIAERCHVELEFGKLHLPYFTVPEG----YTPASYLRELCEAGA 291

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
              R    +          ++RLD+EL VI +M +  YFLIV DFI++A++  I VGPGRG
Sbjct: 292  VKRYGHCSGP-------VKERLDYELKVIGQMGYDEYFLIVWDFIKFARERGIGVGPGRG 344

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            S AGS+ +Y L IT +DPLR+ LLFERFLNP+R+SMPD D+DF  +RR EVI Y+  KYG
Sbjct: 345  SAAGSIVSYVLGITSLDPLRYGLLFERFLNPERISMPDIDVDFDFERRGEVIEYIVQKYG 404

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             +RVAQIITFG++ A+AA+RDVGRAL M Y +VDR+ KL+P +    +  +A+A     +
Sbjct: 405  TDRVAQIITFGTMAARAAIRDVGRALDMSYGEVDRVAKLVPGELNMTI-AKALASSPELK 463

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
             A   DP V RL++ + +LEG+ RHASTHAAG+VI   PL + +P+++     L  TQF 
Sbjct: 464  AAYDHDPEVKRLVDTAAELEGMPRHASTHAAGVVISRDPLVEYLPLHKAA-DGLVTTQFP 522

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTL 618
            M  +E+ GL+K D LGL+ LT++ ++++ + Q RG  +D++ I  DD  TY++L     +
Sbjct: 523  MGTVEELGLLKMDLLGLRNLTVINEAVNLIKQTRGRALDMNAIALDDQTTYNMLARGEGV 582

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK--EKIVSIHP 676
            G+FQLESSGMR  L+ ++P   EDI+ALV+LYRPGP+ + +V +  +      K    HP
Sbjct: 583  GVFQLESSGMRNILKELKPSAFEDIVALVALYRPGPLGSGMVEDFIQRKHGLTKPDYFHP 642

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG- 735
             ++P+LKET GVI+YQEQVM IA++++GY+L +AD LR+AMGKKI E M   ++ FI G 
Sbjct: 643  DLEPILKETYGVILYQEQVMMIARVMAGYTLGQADALRKAMGKKIPEIMAMHRQWFIHGT 702

Query: 736  ---------------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                           A   G    +A  +F+L+  FA YGFNKSH+AAYA++SYQTA++K
Sbjct: 703  TVDEKGKPLKSPIPGAVARGYDVALAEKMFDLMEYFAGYGFNKSHSAAYALVSYQTAYLK 762

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +Y VE++AA +T   DN +K+  + ++ R+  IQ++PP +N    +F V +  I + LA
Sbjct: 763  ANYGVEYMAALLTSVRDNTDKVVIYIEECRRMGIQVLPPDINQSRENFTVVNGAIRFGLA 822

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            A+K VG    + I+ A   D  F S  DFCSR+D++ +NRRVLESL+ AGALD FG  R 
Sbjct: 823  AVKNVGLGAVQEIIRAREKDGDFTSFTDFCSRLDTRVVNRRVLESLIKAGALDQFG-HRA 881

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQR 957
            QLL+ LD+  + A  V+++R     ++F        +  +I L          + + E+ 
Sbjct: 882  QLLKGLDDGLELAARVQRDRNQGQVSLFDLMTDKAEEAMEIPLPDVQPLTIREQLQLEKE 941

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             LG Y SGHPL  +  ++  +  +   E +  + G  + + + +V+ ++  +RKG  + +
Sbjct: 942  TLGLYISGHPLAEFNWLMEALEARRIVELLEAMDGQPVLVVSNIVTIKRITSRKGDLMAF 1001

Query: 1018 VTFSEPAKEYEANFFP 1033
             T  +     E   FP
Sbjct: 1002 ATVEDLTGNCEVVIFP 1017


>gi|303248384|ref|ZP_07334644.1| DNA polymerase III, alpha subunit [Desulfovibrio fructosovorans JJ]
 gi|302490182|gb|EFL50100.1| DNA polymerase III, alpha subunit [Desulfovibrio fructosovorans JJ]
          Length = 1160

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1037 (39%), Positives = 597/1037 (57%), Gaps = 26/1037 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              FVHL  H+ YSLL+GA+ + +++        PA AITD  NL  AL F   A  A ++
Sbjct: 2    SDFVHLHCHTEYSLLDGAIRIGDLVKTAKGFGCPAAAITDHGNLHGALMFYDYAKKADLK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC++ +  +D  K     ++P      +VLL     GY  L++LVS+ +L +     
Sbjct: 62   PIIGCEVYVAKEDRRKKD--ARSPRDAGYHLVLLAKDMTGYHNLLKLVSKGHL-EGFHYK 118

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L + G EGLI L+    G I++     S   A      +  LF DR Y+ +Q 
Sbjct: 119  PRVDKELLGQYG-EGLIALSACLKGEINQKLLRESRDAAVATAREYAALFPDRFYLEIQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++    + +++L+   +LPLVATN+  +L  +D EAHD+L+ +  +  V    R R
Sbjct: 178  NGIPEQTTVNNFLIELSDDLKLPLVATNDCHYLHADDAEAHDILLCIQTAACVDDVKRMR 237

Query: 248  VTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             T +        EM   F D+P+AL NT EIA R    L       P +         K 
Sbjct: 238  FTSNDLYYRSPEEMAEAFKDVPQALANTCEIADRIDVKLDFDGYHFPVYKAPPG----KS 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++ + + A  GL+ RLA+   A     + Y +RL+ EL VI +M F GYFLIV DFI W
Sbjct: 294  LDDVMSDMAREGLKKRLAKMPEA---DPKQYWERLELELGVITKMGFPGYFLIVQDFINW 350

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK ++IPVGPGRGS AGS+ AY+L IT++DP+ + L FERFLN +R+SMPD D+DFC+ R
Sbjct: 351  AKDHDIPVGPGRGSAAGSLVAYSLRITNLDPMPYDLFFERFLNIERVSMPDIDVDFCERR 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVIRYV   YG + VAQI TFG+++AK  +RDVGRAL M + + DR+ KLIP D    
Sbjct: 411  RHEVIRYVTEHYGADAVAQITTFGTMKAKGVVRDVGRALGMTFGETDRIAKLIPEDLKMT 470

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   +     DP +  L++IS++LEGL RHASTHAAG+V+ D+ +++ VP+Y
Sbjct: 471  ID-KALELEPELKTLVRTDPRIAHLIDISRRLEGLARHASTHAAGVVVSDKAMTEYVPLY 529

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            +  +++  VTQ++MK +EK+GL+KFDFLGLKT+T++  +L  + +      D   +P  D
Sbjct: 530  KG-KNNETVTQWDMKRVEKSGLVKFDFLGLKTITVIDDALKIIREMGEEPPDFETLPMTD 588

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
              TY L     T GIFQ+ES GMR+ L  ++P+C ED+IA+++LYRPGP+ + +V  +  
Sbjct: 589  PATYELFARGDTDGIFQVESQGMRKYLRMLKPNCFEDLIAMLALYRPGPLGSGMVELFIR 648

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G + +   HPL++  L+ T GVI+YQEQVM+IAQ+L+ YSL   D+LRRAMGKK  E
Sbjct: 649  RKHGLDPVEYPHPLLEETLRSTYGVIVYQEQVMKIAQVLANYSLGGGDLLRRAMGKKNAE 708

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM +Q+  F+ G ++N I    A  IF+L+ KFA+YGFNKSH+AAYA ISYQTA++K HY
Sbjct: 709  EMSRQRGIFVEGCAQNKIDAKKANEIFDLMEKFAEYGFNKSHSAAYAQISYQTAYLKAHY 768

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PV F+AA MT +M+N +K+ ++    R  +I++ PP VN     F V DN+I Y LAA+K
Sbjct: 769  PVAFMAALMTSDMENQDKLLQYIAACRAGDIELCPPDVNAGLPHFSVKDNKILYGLAAVK 828

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             +G      I      D PF SL D  SRV+ +K+ +RV+E L+  GA D FG +R  L 
Sbjct: 829  NIGRDAVLEIAAEREKDGPFSSLLDLTSRVNMRKVTKRVIEYLIKCGACDGFGCTRAGLF 888

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL------EKFSVENSSVRFENEQ 956
              LD      Q     ++    ++           + L       +            E+
Sbjct: 889  AGLDQAAAVGQRRAAEKSEGRLSLMELVPDKPKPTVGLGLSCPEAELPEWLHEEMMAYEK 948

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              LGFY + HPL  Y+  LR M +    +      G  +++  + V+ ++  T+KG ++ 
Sbjct: 949  EALGFYLTSHPLLAYERDLRSMRVTTLSQCAGLEPGVEVKVPCICVTTKEIITKKGQKMA 1008

Query: 1017 WVTFSE-PAKEYEANFF 1032
            +    +    E E   F
Sbjct: 1009 FCKLEDHLGGEAEVVVF 1025


>gi|242240381|ref|YP_002988562.1| DNA polymerase III subunit alpha [Dickeya dadantii Ech703]
 gi|242132438|gb|ACS86740.1| DNA polymerase III, alpha subunit [Dickeya dadantii Ech703]
          Length = 1160

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1049 (40%), Positives = 609/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G   +  ++ K AA   PAIAITD  NL   ++F   A  
Sbjct: 1    MAE-PRFVHLRVHSDYSMIDGLAKVGPLVKKAAALGMPAIAITDFTNLCGLVKFYGGAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q +     +  + +L    +GYQ L  L+SR Y    
Sbjct: 60   AGIKPIIGADFYL----------QSEELGDELARLSVLAMNNDGYQNLTLLISRAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E    GL++L+GG  G I +     +  + ++ +  +++ F  R Y+
Sbjct: 110  GAAGPTIEREWLVE-HQAGLLLLSGGRQGDIGKFLLRGNQTLVDQCVAFYQQHFPQRFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D       VV LA    LP+VATN+  F+SE+D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEESYLHAVVALATERGLPVVATNDVCFISEDDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEALEN+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEQEMCELFADIPEALENSVEIAKRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  +A  GLE     L      +     +Y +RL+ ELNVI +M F GYFLI
Sbjct: 284  GDMTTEDYLVLRAREGLEERLVFLFPDEEERANRRPEYDERLEIELNVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K NN+PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNNVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDLVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFAAEPQLGEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K  L 
Sbjct: 523  TDFAPLYCDPEGHHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINPRREKQGLE 582

Query: 600  L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                  IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PVDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     I   H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREELSYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA K G+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFKEGAEKMGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +KI     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKIVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I+EA  +   F  L D C+R D KKLNRRVLE L
Sbjct: 823  FHVNDAGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRDLFDLCARTDIKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+ SL +  K A+   +       ++F     +    + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLPDAMKSAEQHARAEAIGQSDMFGVLTESPEQVEQSYSTVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG       +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYAGGGRLKDMHPTERGKVTIAVGLVLA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGVCTLDDRSGRLEVMLF 1031


>gi|319956110|ref|YP_004167373.1| DNA polymerase iii, alpha subunit [Nitratifractor salsuginis DSM
            16511]
 gi|319418514|gb|ADV45624.1| DNA polymerase III, alpha subunit [Nitratifractor salsuginis DSM
            16511]
          Length = 1183

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1060 (37%), Positives = 602/1060 (56%), Gaps = 43/1060 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F HL +H+ YSLL+GA  +  +  K+ A    ++A+TD  N+F  ++F      
Sbjct: 1    MSEHPRFTHLHLHTEYSLLDGANKIKALAKKVKALGMDSVAMTDHGNMFGTIDFYNTMRK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG +  +   D+L     G         + L      GY+ L+ L S+ YL   
Sbjct: 61   EGVKPIIGMEAYLHNSDDL-----GDKSTRQRYHLCLYAKNEIGYKNLMYLSSQAYLKG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF---------FNSSQVAEKRLLTFK 175
                 RI    L+E  +EGLI  +    G ++                 + A+K  L +K
Sbjct: 115  FYYYPRINKKLLRE-HSEGLICSSACLQGEVNWHLNLSDRNKKFGAGGYEEAKKIALEYK 173

Query: 176  KLFGDRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            ++FGD  Y+ L RH   D+ R   Q+++L+    + ++ATN++ + + ED EAH+  M +
Sbjct: 174  EIFGDDFYLELMRHGIGDQQRIDEQIIRLSLETGIKIIATNDTHYTNPEDAEAHEAFMCI 233

Query: 235  AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            A +      +R R +  + Y+K+  EM  +F+D+PEALENT EIA +C+  +++  P  P
Sbjct: 234  AMNKQYDDPNRLRHSVHEFYVKSPEEMARLFADIPEALENTQEIAEKCNLEIKLGNPTPP 293

Query: 294  RF--------------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
             F               E E +     +     ++A  GLE RL            +YR+
Sbjct: 294  NFKFTRERAKLAGLELPEPEEEYSLANDIVLFEHEARKGLEKRLEHVP---EEKHAEYRE 350

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RL+ E+ +I  MKF GY LIV DF++ AK+  IPVGPGRGS AGS+ AY+L+ITDIDP+ 
Sbjct: 351  RLETEIGIINSMKFPGYMLIVWDFVRAAKEMGIPVGPGRGSAAGSLVAYSLSITDIDPIP 410

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            + LLFERFLNP+R+SMPD D+DFCQ RR E+I YV  KYG   VAQIITFG L AK  +R
Sbjct: 411  YGLLFERFLNPERVSMPDIDMDFCQSRRQEIIDYVVEKYGRVNVAQIITFGKLLAKGVIR 470

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            DV R + +PY+Q D   KLIP++    +     A + + +E    DP   ++   +  LE
Sbjct: 471  DVARVMGLPYAQADAFAKLIPDELGITLKDA-YAKEPKIKELIERDPKAAQVWRFALALE 529

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R+A THAAG+VI + PL +  P+++    +   TQ++ K++E   LIKFDFLGLKTL
Sbjct: 530  GLNRNAGTHAAGVVISNEPLWEKTPLFKPTGQETLATQYSGKYVEDVDLIKFDFLGLKTL 589

Query: 580  TLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T ++++L  + +R   ++D   +  +D + Y  + T  TLG+FQ+ES+GM+   + ++P 
Sbjct: 590  TTIEEALQLIEKRHGKRIDFKQVDINDPKVYDYIATGNTLGLFQIESAGMQDLAKKLKPS 649

Query: 639  CIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
              EDIIA+++LYRPGP+++ +   +  RK+G+ +I  + P ++P+LK T GVI+YQEQVM
Sbjct: 650  SFEDIIAMLALYRPGPMESGMLDDFVERKHGRAEITYMFPELEPILKPTYGVIVYQEQVM 709

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            QI Q + G+SL  AD++RRAMGKKIKEEMDK K +F  GA K G  +  A  +F+L+ KF
Sbjct: 710  QIVQTIGGFSLGGADLVRRAMGKKIKEEMDKLKGQFADGAEKKGFDRAKAEELFDLIVKF 769

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A YGFNKSH+AAYA++++ T+++K +YP EF+AA +TLE DN  K+ ++    +   I +
Sbjct: 770  AGYGFNKSHSAAYAMVTFYTSYLKCYYPTEFMAAQLTLEKDNTTKVVRYVDAVKHMGIDL 829

Query: 817  MPPSVNTPCVDFKVGD----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            +PP VN   + F   +      I + L  +KG G    R I+E+  + PF  L DF SR+
Sbjct: 830  LPPDVNRSDLAFIADEIEGRPTILFGLGGVKGAGDVAIRSILESREEGPFRDLSDFISRI 889

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D+ K+N++V+E+ + AGALD  GY+R  +L  ++ I + A    + +     ++F   + 
Sbjct: 890  DTAKVNKKVIEAFIKAGALDGLGYTRKAMLTQIEAIMEAASKATQAKKMAENSLFGAGEE 949

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                ++ L+     +     E E+  LGFY SGHPLD Y+  L K+      E      G
Sbjct: 950  MTHVELELDPMEEFDPLQMLEFEKETLGFYVSGHPLDKYREELAKIDYTLSSEIDELADG 1009

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +       + S  +K ++KG++ G     +     E   F
Sbjct: 1010 SQALFIGKIESITEKISKKGNKFGIANVMDLHGNIELMLF 1049


>gi|296184692|ref|ZP_06853103.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
 gi|296050474|gb|EFG89897.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
          Length = 1183

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1074 (35%), Positives = 601/1074 (55%), Gaps = 58/1074 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            EK+  +V L  H+ YSLL+ +  +  ++ K       +IAITD   ++  ++F ++A   
Sbjct: 3    EKTYDWVSLHQHTGYSLLDSSAKIPELISKAKELGMKSIAITDHGVMYGCVDFYKEAKEQ 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PIIGC++ +  +      N  +        +VLLV    GY+ L+++VS+   ++  
Sbjct: 63   GIKPIIGCEVYVAGKSMHIKQNDKEN---ENYHLVLLVKNETGYKNLMKIVSKAS-VEGF 118

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                R    +L++  +EGLI L+    G I       +   A++  L +K +F D  Y+ 
Sbjct: 119  YYKPRTDHDYLKK-HSEGLISLSACLGGEIQSYILKGNLSKAKEIALLYKDIFKDGFYLE 177

Query: 186  LQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ H   ++     ++++++   ++PLVATN+  ++ +EDY+AHDVL+ +    VV++++
Sbjct: 178  LQYHGMEEQEKVNEELIKMSKELDIPLVATNDVHYIKKEDYKAHDVLLCIQTGKVVNEEN 237

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R  + + YLK+  EM  IFS +PEALENTV+IA +C+F  + H   LP+F   E    
Sbjct: 238  RMRYPSDEFYLKSPEEMYKIFSRVPEALENTVKIAEQCNFDYEFHKSKLPKFPLPEHV-- 295

Query: 304  QKEEENELRNKAVAGLEVRLAQ---------------GAIAKGYHAQDYRQRLDFELNVI 348
              E    LR+    GL  R  +                       A+   +RL++EL++I
Sbjct: 296  --EPYEYLRDLCYKGLIQRYKEFEQLKEVSFSIESVNELADSNDEAKKLVERLEYELSII 353

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M +  YFLIV DFI ++ +N I  GPGRGS AGS+ AY L IT IDP+++SLLFERFL
Sbjct: 354  KQMGYVDYFLIVWDFINFSVENGIMTGPGRGSAAGSIIAYTLGITKIDPIKYSLLFERFL 413

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D DFC +RR EVI YV  KYG   V+QIITFG++ A+A +RDVGRA+  P
Sbjct: 414  NPERVSMPDIDSDFCYERRGEVIDYVVRKYGENSVSQIITFGTMAARACIRDVGRAMNYP 473

Query: 469  YSQVDRLCKLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
            Y++VDR+ K+IP  P   +++   +  +S   EA   +     L++I++ LEGL RH ST
Sbjct: 474  YAEVDRIAKMIPAAPGKAITIDKALELNSELEEAYENEERTKALIDIARALEGLPRHTST 533

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            HAAG+VI  +PL   VPM ++   D  VTQF M  +E+ GL+K DFLGL+TLT+L+ ++ 
Sbjct: 534  HAAGVVIASQPLVNYVPMQKN--EDNIVTQFTMGTLEELGLLKMDFLGLRTLTVLRDAVS 591

Query: 588  FLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             +   +G+ +DL  I +DD   Y ++    T+GIFQLES+GM   ++ ++PD +EDIIA 
Sbjct: 592  MVKDNKGINIDLDKIDYDDKNVYKMIGEGKTVGIFQLESAGMTSFMKELRPDSLEDIIAG 651

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            +SLYRPGP+  I  Y + KN  E I  + P ++ +L  T G ++YQEQVM+I + L+GYS
Sbjct: 652  ISLYRPGPMAEIPKYISNKNNPEGIEYLTPELESILGVTYGCMVYQEQVMEIVRKLAGYS 711

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLA 754
            +  +D++RRAM KK    M++++  FI             G  KNGIS+  A  IF+ + 
Sbjct: 712  MGRSDLVRRAMSKKKHHVMEEERHNFIYGIVDEEGVEKVPGCIKNGISEDAADKIFDSMM 771

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y FNKSHAA+YAV+++QTA+M  +YP E++AA +     + EK+  + + A +  I
Sbjct: 772  DFASYAFNKSHAASYAVVAFQTAYMIHYYPTEYIAAMLNSVKGDNEKVAYYTRFADEIGI 831

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            Q++ P++N     F V +++I + L+AIK VG      I+++      F +L DFC+++D
Sbjct: 832  QVLTPNINESYAKFTVKEDKIRFGLSAIKNVGENVIDSIVKSRERKGVFSNLVDFCNKID 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
               +N+RV+ESL+ AGA DCF   R +LL   + +        K   +   ++F   K  
Sbjct: 892  VSCINKRVVESLIKAGAFDCFKVYRSKLLAVYEKVLDGVSNSRKKNIDGQLSLFTDFK-K 950

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA----- 988
               KI   +            E+ + G Y SGHPL+ Y+  L         + +      
Sbjct: 951  IEVKIEYPEIKEFEKRHILAMEKEMTGLYLSGHPLEEYEKSLSLQTSAKISDIIGDESLE 1010

Query: 989  ---------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                        G+ + +  ++ S  +K TR    + ++   +     E   FP
Sbjct: 1011 DGTVGQQSKLKDGDKVIIGGIINSVTKKVTRNNDMMAFIKLEDLYGVIEIIIFP 1064


>gi|307942140|ref|ZP_07657491.1| DNA polymerase III subunit alpha [Roseibium sp. TrichSKD4]
 gi|307774426|gb|EFO33636.1| DNA polymerase III subunit alpha [Roseibium sp. TrichSKD4]
          Length = 1159

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 544/1028 (52%), Positives = 719/1028 (69%), Gaps = 13/1028 (1%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS+ SLLEGAL +  +LD   +D QPA+ ITDT NLF A EFS KA  +GIQPI
Sbjct: 20   FVHLRVHSALSLLEGALPIKKLLDLAKSDNQPALGITDTGNLFGAQEFSAKAWGSGIQPI 79

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGCQL I   D+++   +G+ P   +  +V++     GY  L+EL SR +L         
Sbjct: 80   IGCQLAIHFSDDVEPERKGELP---LCHVVVIAMDEVGYGNLMELTSRAFLDTDTGLLPH 136

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   +L    ++G+I+L+GG SGP+ +A    + + A +RL    K F DR Y+ +QRH 
Sbjct: 137  VSAEYLAS-HSDGVILLSGGVSGPLGKALLTGNKKAARERLQFLAKAFSDRFYIEIQRHG 195

Query: 191  GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +R  ES  + LAY   LP+VATN + F + EDYEAHD L+ ++   V+ + DR R+T
Sbjct: 196  MEAERKTESAFLDLAYEFNLPVVATNEAFFPAREDYEAHDALICISEGRVLIEDDRRRLT 255

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P+HY K R+EMV +FSDLPEAL++T+EIARRCS+      PILPRF   + D  + E   
Sbjct: 256  PEHYFKTRAEMVDLFSDLPEALQSTLEIARRCSYRPLRRDPILPRFAGADADPEEAERAE 315

Query: 310  E--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+ +A  GL+ RL    +A G   +DY  RLD+E  +I RMKF GYFLIVADFI+WA
Sbjct: 316  AEELKRQAREGLQARLDAHGLAPGLEEKDYWDRLDYETGIIERMKFPGYFLIVADFIKWA 375

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K  +IPVGPGRGSGAGS+ A++LTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQ RR
Sbjct: 376  KAQDIPVGPGRGSGAGSLVAWSLTITDLDPMRFSLLFERFLNPERVSMPDFDIDFCQTRR 435

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVIRYVQ KYG ++VAQIITFGSLQA+A LRDVGR LQMPY QVDRLCKL+P +PA+PV
Sbjct: 436  EEVIRYVQEKYGRKQVAQIITFGSLQARAVLRDVGRVLQMPYGQVDRLCKLVPANPANPV 495

Query: 488  S-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  QAI ++ R REA   +  VDRLL+++QKLEGLYRHASTHAAG+VIGDRPL QLVP+Y
Sbjct: 496  TLGQAIDEEPRLREAAKEEEIVDRLLKMAQKLEGLYRHASTHAAGVVIGDRPLEQLVPLY 555

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            RD RSD+PV QFNMK +E AGL+KFDFLGLKTLT++  ++  + +R  K+D++ +P DD 
Sbjct: 556  RDPRSDMPVAQFNMKMVEDAGLVKFDFLGLKTLTVIDTAVKLIERRAEKIDVAGLPIDDK 615

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             TY LL    T G+FQLES GMR+A+ GM+PD  EDIIALV+LYRPGP++NI VYN  K+
Sbjct: 616  PTYELLARGETFGVFQLESQGMRRAIAGMKPDRFEDIIALVALYRPGPMENIPVYNAVKH 675

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G++++  +HPL++P+L ET G+I+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI  EM+
Sbjct: 676  GEQEMDCLHPLLEPILSETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIAAEME 735

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             Q+ RF+ GA + GI+K  A  IF+L+AKFA+YGFNKSHAAAYA++SY TAW+K ++PVE
Sbjct: 736  IQRARFVDGAVERGINKGQAGTIFDLVAKFANYGFNKSHAAAYALVSYHTAWLKANFPVE 795

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+AASMTL+M N EK+  F Q+AR+  I ++PPS+N   V F V D +I Y++ AIKGVG
Sbjct: 796  FMAASMTLDMGNTEKLGDFRQEARRMKIDVVPPSINKSQVYFDVADGKILYAMGAIKGVG 855

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 HI+E   D PF  L DF  R+  K LN+R LE+LV AGA D    SR ++L+ LD
Sbjct: 856  EQAVEHIVEVRGDTPFKRLGDFARRISPKFLNKRTLENLVCAGAFDELEPSRARVLEGLD 915

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             +   AQ  E+N       +F    G    ++ L +     +  + + E   +GFY S H
Sbjct: 916  RVMGLAQRTEENAAIGQNELFG---GGGEQELQLPEVHGWTAEEKLQREHNAIGFYLSAH 972

Query: 967  PLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            PLD Y  +L KM ++ +      ++   +N RLA  V+S+Q++KT+ G+R+G V  S+  
Sbjct: 973  PLDEYTNLLEKMRVQQWAPFAEAVKKGASNGRLAGTVISRQERKTKTGNRMGIVRLSDST 1032

Query: 1025 KEYEANFF 1032
             ++E   F
Sbjct: 1033 GQFEGLLF 1040


>gi|94969774|ref|YP_591822.1| DNA polymerase III, alpha subunit [Candidatus Koribacter versatilis
            Ellin345]
 gi|94551824|gb|ABF41748.1| DNA polymerase III, alpha subunit [Candidatus Koribacter versatilis
            Ellin345]
          Length = 1159

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1044 (37%), Positives = 607/1044 (58%), Gaps = 27/1044 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL +H+ YS+L+GA  +  ++ ++    QPA+A+TD  N++ A+ F   A  
Sbjct: 1    MP--PEFVHLHLHTDYSMLDGASDVEKLVARVKELGQPAVAMTDHGNIYGAVHFQNAAKE 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++ I+GC+L I  ++N +   +G         +++L    EGY+ L+++VS   L   
Sbjct: 59   KGVKAILGCELYICQKENHREAPEG----DKYNHLIVLAENEEGYRNLVKIVSEASLHG- 113

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 R+  ++L E  ++GLI L+    G +         + A+K   TF  +FG +  Y
Sbjct: 114  FYYKPRVSKNFLAE-HSKGLIGLSACLKGEVAERLTEGKYEAAKKAATTFGDIFGANNFY 172

Query: 184  VNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q     +  R  Q +  L      P+VATN+S +L E+D  A DV++ +     +  
Sbjct: 173  LEIQDQGLEEEKRIHQGLFDLEKDLGYPMVATNDSHYLCEDDSHAQDVMVCIQTGKSIHD 232

Query: 243  KDRPRVTPDHYLKNRSE-MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             +R + + + +    +  M  +F+     L  T+EIA RC+  L+      PRF   E  
Sbjct: 233  TNRMKFSTNQFFVKSAHEMSQVFTGADRVLARTMEIAERCNVKLEKVKNPFPRFDVPEGM 292

Query: 302  DIQKEEENELRN-KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             I    E+  R   A     +R  Q A    +   +Y +RL+FE++ I +M+F GYFLIV
Sbjct: 293  SIDSYFEDVARRGMAKRMNLMRDLQSAGRLRHTFAEYEERLNFEIDTIKKMQFPGYFLIV 352

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A++NNIPVGPGRGS AGS+ AYA+TITD+DPL+ +LLF+RFLNP+R+SMPD D+
Sbjct: 353  WDFIRYARENNIPVGPGRGSAAGSLVAYAMTITDVDPLQNNLLFQRFLNPERISMPDIDV 412

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC +RR EVI+YV  KYG ++VAQIITFG++ AKAA++D GRA+ +PY++VDR+ K++P
Sbjct: 413  DFCMNRRGEVIKYVTEKYGRDQVAQIITFGTMAAKAAIKDCGRAMDIPYAEVDRVAKMVP 472

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                  +   A+ D      A  ++P V  L++ +++LEGL R++  HA+ +VI  +PL+
Sbjct: 473  TTINITID-GALKDSPMLATAYESEPQVKELIDTAKRLEGLVRNSGVHASAVVIAPQPLT 531

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
             LVP+++  ++D  VT ++MK +EK GL+K DFLGL TLT+L  +L  + Q   VK++L 
Sbjct: 532  DLVPLHK-TKNDEIVTAYDMKAVEKMGLLKMDFLGLTTLTILDDALKLIDQTQGVKIELE 590

Query: 600  LIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID-- 656
             +PFDD +TY  +  +  T G+FQ ESSGMR  L   +PD +ED+ AL +LYRPGPI   
Sbjct: 591  KLPFDDKQTYERIFHSGYTSGVFQFESSGMRDVLRKYKPDTVEDLTALNALYRPGPIQGG 650

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             I  + NRK G+ K+   H  +  +L ET GVI+YQEQVMQIA  L+GYSL +AD+LRRA
Sbjct: 651  MIDDFINRKWGRAKVDYFHDDLKTILVETLGVIVYQEQVMQIANKLAGYSLGDADLLRRA 710

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  +EM+KQ++RF  GA   G  K + V+IF+L+ +FA YGFNKSH+AAYA+++Y T
Sbjct: 711  MGKKDAKEMEKQRDRFTKGAIDRGYDKQLTVHIFDLMEQFAGYGFNKSHSAAYALLAYHT 770

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++KTH+P+EF+AA +T    + + + K+  + R   I++ PP VN     F      I 
Sbjct: 771  AYLKTHFPIEFMAALLTSVSGSTDDVVKYINECRDMGIEVRPPDVNVSLASFTPDQGAIR 830

Query: 837  YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            + L+AIK +G      I+ A      F S  +FC +VD + LN+RV+ESL+ +GA+D  G
Sbjct: 831  FGLSAIKNLGHNAIESIVTARQAIGKFSSFFEFCEKVDLRLLNKRVVESLIKSGAMDPLG 890

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKI-TLEKFSVENSSVRF 952
              R QL   +D   + AQ  +++  +    +F    E+     K+ +L      +   R 
Sbjct: 891  -RRSQLFAVIDKAMEAAQKTQRDAESGQHGLFGVFDEEPVAGKKVDSLPNVPDWDEHQRL 949

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI----RGNNIRLAAMVVSKQQKK 1008
             NE+ +LGF+ +GHP++ YK  L        E+         +G    +  ++   +  K
Sbjct: 950  ANEKEILGFFITGHPMEKYKDKLADFRAMSTEDLKNMRTSTAKGEEYYVGGVMSGVKVAK 1009

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            ++KG      T  +         F
Sbjct: 1010 SKKGDMYALGTLEDIHGAVSFLCF 1033


>gi|167745888|ref|ZP_02418015.1| hypothetical protein ANACAC_00582 [Anaerostipes caccae DSM 14662]
 gi|167654403|gb|EDR98532.1| hypothetical protein ANACAC_00582 [Anaerostipes caccae DSM 14662]
          Length = 1153

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1047 (35%), Positives = 579/1047 (55%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +  ++         +IAITD   ++  ++F + A A GI+P
Sbjct: 2    SFTHLHVHTEYSLLDGSSKIKELVHHTKELGMDSIAITDHGVMYGVIDFYKAAKAEGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +      +   + +        +VLL     GY  L+++VSR +  +      
Sbjct: 62   ILGCEIYVTPGSRFEK--EARQGSSNYFHLVLLAENDRGYHNLMKIVSRGFT-EGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L+   +EGLI L+    G I         + A++  L F++++G    ++ LQ 
Sbjct: 119  RVDYEVLERY-SEGLIALSACLGGEIPTYIREGDYEKAKETALRFERIYGKGNFFLELQD 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++    S +++++    + LVATN+  +   ED E HD+L+ +     V+ +DR R
Sbjct: 178  HGISEQTTVNSALIKMSKETGIELVATNDIHYTFAEDVEPHDILLCIQTGKKVADEDRMR 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +YLK+  EM  +F    +A+ENT +IA RC+  +      +P+F   E D     
Sbjct: 238  YEGGQYYLKSPEEMERLFPYARQAVENTGKIAERCNVEIIFGEQKVPKFDVPEGD----T 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR     G+               ++ R+RL+FEL  I  M +  YFLIV DFI +
Sbjct: 294  STSYLRKLCEEGICR-------RYDDVTEELRERLEFELKTIENMGYVDYFLIVWDFIHY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK++ I VGPGRGS AGS+ +Y L ITDI+P+++ LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 347  AKEHGIAVGPGRGSAAGSIVSYCLEITDIEPIKYQLLFERFLNPERVSMPDIDIDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG ++V QIITFG++ A+A +RDVGR L +PY++VD + K++PN+    
Sbjct: 407  RQEVIDYVVEKYGKDKVVQIITFGTMAARAVIRDVGRVLDIPYAKVDGIAKMVPNELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A+      ++A   D     L+++S++LEGL RHAS HAAG+VIG   + + VP+ 
Sbjct: 467  IE-GALKKSPDLKKAYAEDEETKYLIDMSRRLEGLPRHASMHAAGVVIGKDSIDEFVPLA 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
            +    D   TQF M  IE+ GL+K DFLGL+TLT++Q ++  + +R     D++ I  +D
Sbjct: 526  KGA-DDAVTTQFTMTTIEELGLLKMDFLGLRTLTVIQDAVHLIEKREGKPFDINQIDTED 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             + Y +++   T G+FQLES GM+  ++ ++P+ +E+IIA +SLYRPGP+D I  Y   K
Sbjct: 585  PKVYEMISQGRTEGVFQLESGGMKAFMKELKPESLEEIIAGISLYRPGPMDFIPRYVKGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
              K+ I    P ++ +LK T G I+YQEQVMQI   L+GY+L  +D++RRAM KK  + M
Sbjct: 645  VDKDSIRYDCPQLEKILKPTYGCIVYQEQVMQIVMELAGYTLGRSDLVRRAMSKKKGDVM 704

Query: 726  DKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K+++ F        I G  KNGI +  A +I++ +  FA Y FNKSHAAAYAV++YQTA
Sbjct: 705  VKERKNFVYGNEKEDIPGCIKNGIDEKTANHIWDEMLDFAKYAFNKSHAAAYAVVAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            +++ HY  EF+AA +T  + N  K+ ++    R+  I+I+PP +N     F V D  I Y
Sbjct: 765  FLRCHYQKEFMAALLTSVLGNTNKVSEYIYACRKMGIKILPPDINKGEGAFSVDDGCIRY 824

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+AIK +G      I+        + SL D   R+ SK++N+R +ESL+ +GALD  GY
Sbjct: 825  GLSAIKSLGKPVIEEILRERSEGGSYKSLRDLIERLSSKEMNKRTVESLIKSGALDELGY 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q +    +I +  Q   K+  +   +I  F  E    + +I        +   R   
Sbjct: 885  TRKQQMFVYASILESIQKERKHEISGQMSILDFMSEDQQKNFEIEYPDVGEFDKEQRLAM 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------TIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPL+    IL ++      +  A                +  ++   + 
Sbjct: 945  EKEVLGIYVSGHPLEDDVEILERLTTASTADFTAEEDTGQPVLRDKQTCIIGGIISDMKV 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K TR    + ++T  +     E   FP
Sbjct: 1005 KLTRTNQNMAFLTLEDLMGTVEVIVFP 1031


>gi|325289860|ref|YP_004266041.1| DNA polymerase III catalytic subunit, DnaE type [Syntrophobotulus
            glycolicus DSM 8271]
 gi|324965261|gb|ADY56040.1| DNA polymerase III catalytic subunit, DnaE type [Syntrophobotulus
            glycolicus DSM 8271]
          Length = 1157

 Score =  788 bits (2035), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1039 (35%), Positives = 587/1039 (56%), Gaps = 37/1039 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+GA  +N ++ K      PA+AITD   ++  ++F +     GI+PI
Sbjct: 2    FTHLHVHTEYSLLDGAARINKLVKKAGELGMPALAITDHGVMYGVIDFYKACKKQGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +      K+T +          +VLL    EGY+ L+++VS  ++ +      R
Sbjct: 62   IGCEVYVAPG---KLTEKNAGRDDKNYHLVLLAENMEGYRNLVKIVSNAHI-EGFYYKPR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                +L+E  ++GLI L+   +G I      ++ + A +  L +  +FG    ++ +Q H
Sbjct: 118  TDKKFLRE-NSKGLIALSACLAGEISELILEDNLEKARETALEYLDIFGKGNFFLEIQDH 176

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D+    +++++++    +P+VATN+  ++ + D    DVL+ +     ++ + R   
Sbjct: 177  GLRDQQKVNTEMLKISRMTGIPIVATNDVHYVEKADSFLQDVLLCIQTGKTLNDQTRMSF 236

Query: 249  TPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                +       +++ F + PE LE T EIA RC+         LP +   E        
Sbjct: 237  EGQEFYLKAHSEMNLLFGEHPEVLEITEEIAARCNVDFAFGTNFLPDYQVPEGF----TL 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR +       R  Q         +  + RL++ELNVI +  +SGYFLIVADF ++A
Sbjct: 293  DQYLREQCAQIFPQRYPQAG-------EREKGRLEYELNVITKTGYSGYFLIVADFCRYA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++N + VGPGRGS A S+ AY L ITDI+PLR  LLFERFLNP+R++MPD DIDF  + R
Sbjct: 346  RENGVTVGPGRGSAAASMVAYLLGITDIEPLRHDLLFERFLNPERITMPDIDIDFDPEGR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D+VI+YV  KYG ++V QIITFG++ AK A+RDVGR L +P S+VD++ K +PN+    +
Sbjct: 406  DKVIKYVTQKYGADKVCQIITFGTMGAKGAIRDVGRVLNIPLSKVDKVAKAVPNELGMTL 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                +            +  + RLLEISQ LEG+ RHASTHAAG+VI   PL+  +P+ R
Sbjct: 466  ERA-LTVSPDLIRMVSEEEEIKRLLEISQGLEGMPRHASTHAAGVVIAREPLTNYLPLQR 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                  P+TQF MK +E  GL+K DFLGL+ LT++ ++L  + +     +DL+ +P DD 
Sbjct: 525  TA-EGFPMTQFPMKTVEDIGLLKMDFLGLRNLTIISQTLTRIQETQGKTIDLNKLPLDDL 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY +L+   + G+FQLES GM+  L+ ++P C EDIIA+++LYRPGP++ I  +  RK 
Sbjct: 584  KTYQMLSEGKSSGVFQLESGGMKAILKELKPSCFEDIIAVLALYRPGPMEQIPEFIKRKQ 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
               K+  +HP ++ +L+ T G+I+YQEQVMQIA+ L GYSL  AD+LRRAMGKK ++ MD
Sbjct: 644  S-GKLSYLHPKLEKILQATYGIIVYQEQVMQIARDLGGYSLGRADLLRRAMGKKNRDIMD 702

Query: 727  KQKERFISG------------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ F+ G            A + G+ K  A  IF+L+AKFA+YGFNK HA AYA+ISY
Sbjct: 703  EERQNFVHGLQDDHGEVIVPGAIRLGLKKNEAEEIFDLMAKFAEYGFNKGHATAYALISY 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K ++P+EF A+ ++  +   +K+  +  +A+   I I+PP V     DF +    
Sbjct: 763  QTAYLKANFPLEFAASLLSSVIGVSDKVSFYIHEAQNNGITILPPDVQFSYNDFAIEGRA 822

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I + L A++ VG      I+E   + PF SL DF SR+DS+ +N+RV+ESL+ AGA    
Sbjct: 823  IRFGLGAVRNVGAQVVEKIIEERKNGPFRSLYDFISRMDSRMVNKRVMESLIKAGAFQSL 882

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              SR Q L  L+ +   AQ  +++R +   ++F  ++    D   + +    +     + 
Sbjct: 883  C-SRAQALTVLERMLDLAQNRQRDRESGQMSLFDLDEKLEED-FAMPQLDEVSQGDISKL 940

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  LG Y + HPL   +   + +        +  +    + L  ++ S +Q  T++G  
Sbjct: 941  EKEYLGLYLTNHPLSSIETQYKDLISSDIATCLEGLEEKKVILCGIITSYRQTITKRGEM 1000

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            +      + +   E   FP
Sbjct: 1001 MATFLLEDLSGTIEVLVFP 1019


>gi|170727605|ref|YP_001761631.1| DNA polymerase III subunit alpha [Shewanella woodyi ATCC 51908]
 gi|169812952|gb|ACA87536.1| DNA polymerase III, alpha subunit [Shewanella woodyi ATCC 51908]
          Length = 1157

 Score =  788 bits (2035), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1047 (39%), Positives = 601/1047 (57%), Gaps = 37/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   PSFVHL+VHS +S+ +G   +  I+ K++    PA+A+TD  NL   ++F +    
Sbjct: 1    MSD-PSFVHLRVHSDFSMSDGLAKVKPIIGKVSELGMPAVALTDQTNLCGLVKFYEACHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+P+IG    + +                + ++ +L    EGY+ L  L+S  YL   
Sbjct: 60   AGIKPLIGSDFWVKVPG----------FDKNLCAVTVLAMNNEGYKNLTLLISDAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL +  +EG+I+L+GG  G I +A    +    E  +  ++  F DR Y+
Sbjct: 110  IDDRAVIDHEWLAKY-SEGIILLSGGRQGDIGQALLKGNLPQVESLVEFYQTHFPDRYYL 168

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R     V+LA    LP+VATN  +F + E +EAH++ +A++    ++  
Sbjct: 169  ELLRTGRPDEERYLHMAVELAEVKGLPVVATNQVVFNTPELFEAHEIRVAISDGFTLADP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  + + Y K+  +M  +F D+PEA+ENTV+IA+RC+  +++               
Sbjct: 229  RRPKKYSAEQYFKSSEQMCELFEDIPEAIENTVQIAKRCNVTVRLGEYF-----LPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L   +  GLE RL         +      Y +RLD EL VI +M F GYFLI
Sbjct: 284  GELTIEDFLVAVSEKGLEERLEFLFPDPEVRAEKRPKYDERLDVELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW K N+IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWGKDNDIPIGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ K++
Sbjct: 404  IDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   +   +E+  AD  V  L+++ + LEG+ R+A  HA G+VI    +
Sbjct: 464  PAEPGMTL-AKAFEVEPALQESYDADEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV----- 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  +       
Sbjct: 523  TDFAPIYCDAEGQNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALQMVNAKKDKLGEE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +V +  IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  RVRIESIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +             H  +  +L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIERKHGREAVSYPDSEYQHESLQWVLEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  G+  NG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRGTFEEGSINNGVDGPLSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA M+ +MDN +KI     +  +  + ++PP VN   + 
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMSADMDNTDKIVILVDECERMEMPLLPPDVNKGLLK 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F V D   I Y + AIKGVG      I+ A  D PF  L DFC+RVD KKLN+R++E L+
Sbjct: 823  FNVDDEGNIVYGIGAIKGVGEGPVDSILAARKDGPFKDLFDFCARVDLKKLNKRIMEKLI 882

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945
             AGALD  G  R  ++ +L    + A    K       ++F        D K    + + 
Sbjct: 883  CAGALDTLGPHRAAMMATLPEAIRAADQNAKAEAIGQHDMFGLLNSDPEDIKQQFVECTP 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                V  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ +
Sbjct: 943  WPDKVWLEGERETLGLYLTGHPINQYLKELKHYTSCRLKDIHPTERGKTMKAAGLVVATR 1002

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++GS++G VT  + +   E   F
Sbjct: 1003 VMMTKRGSKMGLVTLDDKSARLEVMLF 1029


>gi|197286116|ref|YP_002151988.1| DNA polymerase III subunit alpha [Proteus mirabilis HI4320]
 gi|194683603|emb|CAR44494.1| DNA polymerase III, alpha chain [Proteus mirabilis HI4320]
          Length = 1160

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1049 (39%), Positives = 613/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VHS YS+++G      ++ K+A+   PA AITD  NL   ++F   A  
Sbjct: 1    MAD-PRFIHLRVHSDYSMIDGLAKTGPLVKKVASLGMPAFAITDFTNLCGLVKFYGAAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G  + ++ +                  + +L     GYQ L  L+S  Y    
Sbjct: 60   AGIKPIVGADVYLETE----------LLGDEYAHLTILARDNVGYQNLTLLISEAYKHGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL     EGL++L+GG  G + +     +  + E+ L  ++  F D  Y+
Sbjct: 110  GAAGPVIKQEWLTTY-KEGLLLLSGGRMGDVGKFLLRGNRALVEQCLEYYQTHFPDSYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D      + V LA    LP+VATN+  FL  +D++AH++ +A+     +S  
Sbjct: 169  ELIRTGRPDEESYLHEAVALASEKGLPVVATNDVRFLDSDDFDAHEIRVAIHDGFTLSDP 228

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  Y++   EM  +F+D+PEALEN+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPKHYSPQQYMRTEEEMCELFADIPEALENSVEIAKRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA        +     +Y +RL+ EL VI +M F GYFLI
Sbjct: 284  GDMSTEDFLIKKSKEGLEERLAFLFPDPQEREKRRPEYDERLEIELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDRVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFAAEPQLPEIYEADEEVKSLIDMARKLEGVTRNAGKHAGGVVISPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R       
Sbjct: 523  TDFAPLYCDPEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKSLE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             VD+S I   D  ++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PVDISAISLTDQRSFDMLQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G E+I        H  + P+L+ T GVI+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGVEEISYPDVKWQHESLQPVLEPTYGVILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F +GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFEAGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I+EA      F  + D C+R ++KKLNRRV+E L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIVEARQQGGHFKDIFDLCARTETKKLNRRVMEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL++  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDKLGPHRAALMSSLEDALKAADQHAKAEAIGQSDMFGVLAEAPEQVERSYANVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVS 1003
                 V  E E+  LG Y +GHP+  Y   + +       ++ V T RG  +++A +V++
Sbjct: 943  KWPDQVVLEGERETLGLYLTGHPITRYLKEIERYAAGTRLKDLVPTPRGQMVKVAGLVLA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 SKVFTTKRGNRIGICTLDDRSGRLEIMLF 1031


>gi|260432607|ref|ZP_05786578.1| DNA polymerase III subunit alpha [Silicibacter lacuscaerulensis
            ITI-1157]
 gi|260416435|gb|EEX09694.1| DNA polymerase III subunit alpha [Silicibacter lacuscaerulensis
            ITI-1157]
          Length = 1166

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 505/1057 (47%), Positives = 688/1057 (65%), Gaps = 47/1057 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  SP F+HL+VH+ YSLLEGA+ L  +    A+   PA+A+TDTNN+F ALEFS  A  
Sbjct: 1    MSSSPRFIHLRVHTEYSLLEGAVRLKKLPGLCASMDMPAVAVTDTNNMFCALEFSVTASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPIIGCQ+D+           G  P P  P +VLL  +  GY+ L++L S +Y +D+
Sbjct: 61   AGIQPIIGCQVDLSY----VTAQPGDKPTPPAP-VVLLAQSETGYENLMKLSSCLY-VDK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G Q  ++ L  L +  + GLI LTGG  GP+ R         AE  +     +F DRLY+
Sbjct: 115  GGQLPQVTLDEL-QRHSAGLICLTGGPDGPVGRLLQQGQRPAAEALVDRLAAMFPDRLYI 173

Query: 185  NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G D      R  E   V++AY   LPLVATN+  F + + YEAHD L+ +A   
Sbjct: 174  ELQRHPGEDGQPEAERLTERGHVEMAYAKNLPLVATNDVYFPTSDMYEAHDALICIAEGA 233

Query: 239  V-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                Q+ R R+T  HY K+  EM ++F+DLPEA+ENTVEIARRC+F+             
Sbjct: 234  YVDQQEGRRRLTAQHYFKSPQEMATLFADLPEAIENTVEIARRCAFMAYKRD-------- 285

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    +E  ELR +A  GL+ RLA   I      ++Y++RLDFEL +I  M F GYF
Sbjct: 286  PILPKFADDEVEELRRQANEGLQKRLA--VIPHAVSPEEYQKRLDFELGIIESMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK++NIPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKEHNIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIRYVQQKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS++  + D+ R RE    +  VDRLL   Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALKDEPRLREEARNEEVVDRLLTYGQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G  +
Sbjct: 524  RPLDELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLIRKSGRDL 583

Query: 597  DL------------------SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
             +                  + IP DD  TY L +   T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  HIAADGTQLYDPPEGAVNEINAIPLDDPATYKLYSAAKTVAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG+ +I S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPTYCEVKNGQRQIQSVHPLIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKIKE MD ++ +F +GA+ NG+    A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEAGAAANGVDAKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQT W+K ++PVEF+A  M  ++   +K+  + ++ R+   +  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLGLPYV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            PP VN     F V D ++ Y+L A+K VG      +++   DKPF +L DF  RVD KK+
Sbjct: 824  PPCVNRSQATFDVVDGQLVYALGALKNVGVEAMNLVVQGRGDKPFVNLFDFARRVDLKKV 883

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             +R LE +  AGA D    +R ++ +SL+ + +Y+  + + + +   ++F  E G    +
Sbjct: 884  GKRPLEMMARAGAFDQLDKNRRRVFESLEQLVQYSAAIHEQKNSNQVSLFG-EAGDDLPE 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-TIRGNNI- 995
              L K      + R   E + +GFY SGHPLD Y P L++  +   +E       G  + 
Sbjct: 943  PRLSKSPDWLPAERLSEEFKAIGFYLSGHPLDDYLPALKRKQVMTLDEVTEKARSGPFVA 1002

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++A +V  +Q++K+ KG+R  +   S+P   YE   F
Sbjct: 1003 KMAGVVAGRQERKSAKGNRFAFAQLSDPTGAYEVTLF 1039


>gi|116619157|ref|YP_821313.1| DNA polymerase III subunit alpha [Candidatus Solibacter usitatus
            Ellin6076]
 gi|116222319|gb|ABJ81028.1| DNA polymerase III, alpha subunit [Candidatus Solibacter usitatus
            Ellin6076]
          Length = 1151

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1036 (38%), Positives = 601/1036 (58%), Gaps = 26/1036 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YSLL+GA  ++ ++  +   + PA+A+TD  NLF A++F   A A+GI P
Sbjct: 2    SFVHLHCHTDYSLLDGACDIDQLMKIMVEQKMPAVAMTDHGNLFGAVKFYNAAKASGIHP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC++ +      +  ++ +T       +VLL    +GY+ LI+LVS  YL +      
Sbjct: 62   VIGCEVYVS-----QKGHKERTNTDRYNHLVLLCENQQGYKNLIKLVSTSYL-EGFYYKP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            RI L  L +  +EGLI ++    G I      +    A +    +  +FG    ++ +Q 
Sbjct: 116  RIDLDLLSQ-HSEGLIGMSACLRGHIPETILNDKYDDARRMAHQYGDIFGAKNFFLEIQD 174

Query: 189  HRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H      R + ++V+L+     PLVATN+S +L ++D  AH++LM +      +  +R R
Sbjct: 175  HHLEQDKRLTPELVRLSSETGFPLVATNDSHYLRKDDARAHEILMCIQTGKSFNDPNRMR 234

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + PD YLK R EM+ +F +L  +L+ T EIA+RC   L+      PRF        +  
Sbjct: 235  WSTPDFYLKTREEMMQLFGELEHSLDRTWEIAQRCHVKLEKVLDPFPRFDIP----TEHT 290

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHA-----QDYRQRLDFELNVIARMKFSGYFLIVA 361
             +      A  G E R  +    K         ++Y +RLD E+ +I  MKFSGYFL+V 
Sbjct: 291  TDTYFEYVARMGFEKRRGRLEAMKAKGTLKHDLEEYAERLDREIKMIQNMKFSGYFLVVW 350

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++AK   IPVGPGRGS AGS+ +YA+ ITDIDPL++ LLFERFLNP+R+S PD D+D
Sbjct: 351  DFIRYAKDQGIPVGPGRGSAAGSLVSYAMEITDIDPLQYGLLFERFLNPERVSFPDVDVD 410

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RR EVI+YV  KYG E+VAQIITF +L A+AA++DVGR L+MP  +V+RL KL+P 
Sbjct: 411  FCMNRRGEVIQYVTQKYGREQVAQIITFNTLGARAAIKDVGRVLEMPLPEVERLTKLVPA 470

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +  +AI  +  F+EA   DP  D +L+++ +LEGL R+ S HAAG+VI   PL  
Sbjct: 471  TLNISL-QEAIDQEPGFKEAARKDPRCDDVLKVALRLEGLSRNCSVHAAGVVISPLPLQD 529

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
            LVP+Y+  R +  VTQF+M  +EK  L+K DFLGL TLTL+Q +L  + +R  V +    
Sbjct: 530  LVPLYKTNRDE-IVTQFDMGGLEKLQLLKMDFLGLTTLTLIQDALRLIKKRHGVTIVPED 588

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NI 658
            +P DD  TY +     T G+FQ ESSGMR  L   QP  +ED+ AL +LYRPGPI    +
Sbjct: 589  LPLDDKGTYEVFCKGITSGVFQFESSGMRDILRRYQPSRLEDLTALNALYRPGPIQGGMV 648

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK G++ +    P +  +L+ET GVI+YQEQVMQI+  ++GYSL +AD+LRRAMG
Sbjct: 649  DDFIERKWGRKAVQYDLPELQVLLEETYGVIVYQEQVMQISNRIAGYSLGDADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM KQ+ERF+ GA + G ++     IF+L+ +FA YGFNKSH+AAYA +++ TA+
Sbjct: 709  KKKLEEMVKQRERFVKGALERGFNQKKVEKIFDLMEQFAGYGFNKSHSAAYAYLAFVTAY 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K HYPV+F+AA +T E  N  K+ K+  + R+  I+I+PP VN     F    + I + 
Sbjct: 769  LKAHYPVDFMAALLTSETGNTAKVVKYINECREMGIKILPPDVNHSEWSFTPDGDAIRFG 828

Query: 839  LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            + AIK VG +    I +  A+   F SL +FC +VD   +NRR++ESL+ AGA+D    +
Sbjct: 829  MGAIKNVGQSAVEAIGKTRAEVGKFPSLHEFCEKVDLGAVNRRMIESLIRAGAMDSLEGT 888

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQ 956
            R Q   +++   +     +++R +    +F             L      +   +   E+
Sbjct: 889  RSQKFAAVEGAMEAGARAQRDRESGQVGLFGEVIAADEPHSAPLPNIPDWSEKEKLAGEK 948

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             +LGF+ +GHP+D Y   + ++            + + + +  ++    +K+ R+G    
Sbjct: 949  ELLGFWVTGHPMDRYMEKVAELANADTSSLEGLAKNHEVAICGVLTGIARKRNREGKPWC 1008

Query: 1017 WVTFSEPAKEYEANFF 1032
             +T  + A   EA  F
Sbjct: 1009 AMTLEDRAGSVEALLF 1024


>gi|251771258|gb|EES51839.1| DNA polymerase III, alpha subunit [Leptospirillum ferrodiazotrophum]
          Length = 1193

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1044 (39%), Positives = 606/1044 (58%), Gaps = 22/1044 (2%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             +   FVHL +H+ YSLL+GA  +  +++K A    PA+A+TD  NLF ALEF ++A   
Sbjct: 4    PRPGRFVHLHLHTQYSLLDGANKIAPLMEKCARLGMPAVAMTDHGNLFGALEFYREAQKH 63

Query: 66   GIQPIIGCQLDIDMQDNLKM---------TNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            G++PI+GC+L +  +               + GK        + LL     GYQ L+E+V
Sbjct: 64   GVKPILGCELYVTPRSRFDREELLMPSGGPHGGKKINNASFHLTLLAENLTGYQNLLEIV 123

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            SR +L +      R     L     EGLI L+G   G +         + A      F+ 
Sbjct: 124  SRAHL-EGFYYRPRADFELLYR-HREGLIALSGCLKGQVSYLLTRGERERACATADLFRN 181

Query: 177  LFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            +FG  R +  LQ +   ++     +++ L+   ++P+VATN+  +L  ED   HD+L+ +
Sbjct: 182  IFGPGRYFFELQANGLEEQRVANRELLSLSREMKIPVVATNDCHYLDREDALPHDILLCL 241

Query: 235  AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
                 +   +R R    + YLK+  E++  F ++PEA+ENT+ IA R    L +    +P
Sbjct: 242  QTGKTLDDPNRLRFGAEEFYLKSPDEVIEAFREIPEAVENTLAIAERIDLTLDLKKTYMP 301

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             +   +  +  +       +++  GLEVR  +         + YR RL+ E+ VI  M F
Sbjct: 302  EY-VPDVGETGRTINELFCDRSREGLEVRFGEKEFD-AERKELYRARLEREIAVILEMGF 359

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
            +GYFLIV DFI+ A++  I VGPGRGS AGS+ A++L IT+IDP+ F LLFERFLNP+R+
Sbjct: 360  AGYFLIVWDFIRKAREQGIAVGPGRGSAAGSLVAWSLRITNIDPIAFGLLFERFLNPERV 419

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            S+PD D+DFC +RR EVI YV  KYG +RV+ I TFG++ AKA++RDVGR L M YS+VD
Sbjct: 420  SLPDIDVDFCMNRRGEVIDYVMKKYGADRVSMIATFGTMGAKASIRDVGRVLGMTYSEVD 479

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            R+ K+IP      +    +  +  FRE R  DP++DRL+ +S KLEG+ RHAS HAAGIV
Sbjct: 480  RVAKMIPTALEMTLEKA-LEQNKEFRELREKDPAIDRLVSLSMKLEGITRHASIHAAGIV 538

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            I   PLS  VP+ R       VTQF    +EK GL+KFDFLGL TLTL++ ++  +    
Sbjct: 539  ISQDPLSGHVPLMRGA-GGETVTQFTKDDVEKVGLVKFDFLGLTTLTLIEDAVRRIRVHT 597

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             + D+  IP DD  TY  L    TLGIFQLES GM   L  + P+  ED+IAL++LYRPG
Sbjct: 598  PEFDIDRIPLDDPGTYAFLQGGKTLGIFQLESRGMTDLLVKLAPEVFEDLIALLALYRPG 657

Query: 654  PIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PI++ +   +  RK    +IV  HP ++P+L+ET GVI+YQEQVMQIA +L+G+SL +AD
Sbjct: 658  PINSGMVDDFIRRKKNPREIVYEHPDLEPILRETYGVIVYQEQVMQIANVLAGFSLGDAD 717

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM+K K  FI+GA +    +T A +IFEL+A FA YGFNKSH+AAYA+
Sbjct: 718  LLRRAMGKKKPEEMEKMKGLFITGAVERKTDRTKADHIFELMAHFAGYGFNKSHSAAYAL 777

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ISYQTA++K HYPVEF AA +T  +D+ EKI  F   AR+ +I+++ P +N   +DF V 
Sbjct: 778  ISYQTAYLKAHYPVEFWAALLTNALDDTEKIGTFLAGARELDIRVLSPDINESLLDFTVL 837

Query: 832  DNR-IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              R I + L A+K VG      I+E  A   PF S  DF  R+D  K+NRRV+E+L  AG
Sbjct: 838  PGRTIRFGLGAVKNVGRQAVEAILEIRAAGGPFLSFPDFMKRIDGHKVNRRVVEALAKAG 897

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A D  G +R   + ++D + ++   ++K + +K   +F   +     +         +  
Sbjct: 898  AFDSLGTTRAAAMANIDPLLEWVAGIKKPKKSKMGKLFREFEQDSEPEAPWTAVPEWDEK 957

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
               + E+  LGFY S HP+  Y  I  ++      +      G+ + +  +V + ++ KT
Sbjct: 958  TLLKAEREGLGFYLSRHPMTPYMKIAEELECPTLGQLEGQAEGSTVSVFGIVSAIRELKT 1017

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
            +KG ++  VT  +  +  E   FP
Sbjct: 1018 KKGDKMAQVTLMDFEQSLEMVLFP 1041


>gi|300814414|ref|ZP_07094685.1| DNA polymerase III, alpha subunit [Peptoniphilus sp. oral taxon 836
            str. F0141]
 gi|300511522|gb|EFK38751.1| DNA polymerase III, alpha subunit [Peptoniphilus sp. oral taxon 836
            str. F0141]
          Length = 1145

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1051 (35%), Positives = 580/1051 (55%), Gaps = 50/1051 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YSLL+ +  +  I  +       A+A+TD  N++ A++F +    
Sbjct: 1    MSN---FIHLHVHSEYSLLDASTKIEEIPVRAKELGMKAVALTDHGNMYGAIDFYKACKK 57

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIGC++ +  +         +        +VLL    +G + L+++VS  + +D 
Sbjct: 58   VGVKPIIGCEIYVSQKSLYLKDRTNER-----YHLVLLAENNQGLKNLMKIVSIAF-VDG 111

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 R+ L  L++  ++G+I  +   +G + R         A+K  L ++ +FG D  +
Sbjct: 112  YYYKPRVDLDVLKKY-SKGIIATSACLAGEVQRLIQRRDYDEAKKAALRYRDIFGKDNFF 170

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ H   ++ R   ++ +L+    + L  +N+  +L +ED +A DVL+ +     +  
Sbjct: 171  LELQDHGIPEQKRVNRELNRLSKETGISLSCSNDVHYLKKEDAKATDVLLCIQTGAKIKD 230

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            + R +  T + YLK+  EM +IFSD  +A+ NT  IA RC+   +     LP F      
Sbjct: 231  EKRMKFPTEEFYLKSAEEMENIFSDNLDAINNTGIIADRCNVDFEFGHYHLPEFKVPSG- 289

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                  E+ L   A  GL               +  + R + E   I +M F  YFLIV 
Sbjct: 290  ---YTNESYLEKLAKEGLNK-------RYKVIDKKIKDRFNMEFQTITQMGFVDYFLIVW 339

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI + KKNNI VGPGRGS AGS+ +Y L I DIDPL+F LLFERFLN +R+SMPD DID
Sbjct: 340  DFINYVKKNNIQVGPGRGSAAGSIISYGLGIIDIDPLKFDLLFERFLNKERVSMPDIDID 399

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RR+EVI YV  KYG ERVAQI+TFG++Q++ A+RDVGR L + YS+VD + K +P+
Sbjct: 400  FCYERREEVIDYVCEKYGDERVAQIVTFGTMQSRQAIRDVGRVLDIAYSRVDYIAKQVPH 459

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +  +A+     F+E    D     L++I++++EGL RH STHAAG+VI   PL+ 
Sbjct: 460  ALKMTLD-KALDISESFKELYEKDKEARNLIDIAKRIEGLPRHTSTHAAGVVISKNPLTD 518

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSL 600
             VP+ R+    +  TQFNM  +E+ GL+K DFLGL+TLT+L+ ++        VK+D S 
Sbjct: 519  YVPLTRN--DQIIATQFNMIQLEELGLLKMDFLGLRTLTVLRDAISLVYDNYKVKIDFSE 576

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
              +DD +   +     TLG+FQ ESSGMR  L+ ++PD   D++A  +L+RPGP+  I  
Sbjct: 577  FTYDDEKVLKMFAKAETLGVFQFESSGMRLFLKELKPDAFSDLVAANALFRPGPMKQIPK 636

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K+ K KI  IHP+++P+LK+T G I+YQEQVMQI Q++ GYSL  AD++RRA+ KK
Sbjct: 637  FIESKHDKSKISYIHPILEPILKDTYGCIVYQEQVMQIVQIVGGYSLGRADIVRRAISKK 696

Query: 721  IKEEMDKQKERFI--------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
                M+++++ FI         GA +NG+ +  A  I++L+  FADY FNKSH+ AY+VI
Sbjct: 697  KMAVMEEERKNFIYGNEKDNVCGAIRNGVDEKSANEIYDLIIDFADYAFNKSHSVAYSVI 756

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +Y++AW+K +YP EF+AA ++    +++++  + ++ ++  I ++PP+VN    +F V  
Sbjct: 757  AYRSAWIKYYYPREFMAAQISTYTSDIKQVSLYIEELKRLGIGLLPPNVNYSQKNFTVEG 816

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDF---CSRVDSKKLNRRVLESLVFA 888
             +I + L A+K VG      I++A      F SL DF     +V ++ LN++ LESL+  
Sbjct: 817  KKIRFGLKAVKNVGENLIEAIVQARDKLGNFTSLWDFVDKVQKVSAQVLNKKALESLIRC 876

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            G LD F  +R Q L   + + +  Q   +N       +F +   +      L      + 
Sbjct: 877  GTLDDFNGNRAQYLAVYEKVMENNQKSIRNNIRGQVTLFGNLNKSED----LPNLKDFSL 932

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------GNNIRLAAMVV 1002
              +   E+ V+G Y SGHPLD Y+P L         E   +          +IR+A ++ 
Sbjct: 933  RDKLNMEKEVIGIYVSGHPLDDYRPALISFSNTNTGEIFESYNSSSLIQNKDIRIAGLLK 992

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +K+   T+    + + +  +     E   FP
Sbjct: 993  NKKTMITKTNKVMAFASLEDLFGTIELIIFP 1023


>gi|260775271|ref|ZP_05884168.1| DNA polymerase III alpha subunit [Vibrio coralliilyticus ATCC
            BAA-450]
 gi|260608452|gb|EEX34617.1| DNA polymerase III alpha subunit [Vibrio coralliilyticus ATCC
            BAA-450]
          Length = 1159

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1048 (39%), Positives = 607/1048 (57%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFIHLKVHSDFSMVDGLSKVPPLVKKVAEMGMPAMALTDFTNLCGLVKFYGTAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG    +          Q +     +  + +L +  EGY+ L  L+S+ YL   
Sbjct: 60   CGVKPIIGADFAM----------QSEEFGEELTKLTVLAADNEGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I   WL E+ + GLI+L+G  SG I +A    + +VA+     + + F DR ++
Sbjct: 110  VQHQPVIDKQWLAEL-SAGLIVLSGAKSGEIGKALLKGNHKVAQNCADFYHQHFADRFFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        ++ A   +LP+VATN+ + L E  +EAH++ +A+     +   
Sbjct: 169  ELTRTGRADEETYLHFALEFAEKEQLPVVATNDVVILDETTFEAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   YL++  EM  +F+D+PEALEN+VEIA+RC+  +++               
Sbjct: 229  RRPKNYSAQQYLRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               EE   L  K+  GLE RL         +     +Y +RL  EL VI  M F GYFLI
Sbjct: 284  EGMEETEFLVKKSEEGLEERLEFLFPDEEERAKRRPEYDERLKVELEVINNMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +       +    E   AD  V  L+++ + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLEKA-FKAEPALPELYEADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKD 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVRIESIPLDDAASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRATFEDGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N     
Sbjct: 763  AYALVSYQTLWLKMHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLKVLPPDINAGLYR 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  +  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVDENGAIVYGIGAIKGVGEGPIEAILEARNKGGHFKDLFDFCARIDLKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            ++AGALD  G  R  ++ SL++  K A    +       ++F    +     +    K  
Sbjct: 883  IYAGALDRLGPHRAAMMASLNDAVKAASQYHQAEAFGQSDLFGVLTEAPEEVEHKYTKVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ 
Sbjct: 943  AWPEKVWLEGERDTLGLYLTGHPINAYIKELGKYTSCRLKDATPTRRDQSVTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|154271|gb|AAA27191.1| DNA polymerase III alpha subunit [Salmonella enterica subsp. enterica
            serovar Typhimurium]
          Length = 1160

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1049 (40%), Positives = 609/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++
Sbjct: 110  GAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +   
Sbjct: 169  ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  KA  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            + FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VSFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP E +AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEIMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     + +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTASGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|290968934|ref|ZP_06560469.1| DNA polymerase III, alpha subunit [Megasphaera genomosp. type_1 str.
            28L]
 gi|290780890|gb|EFD93483.1| DNA polymerase III, alpha subunit [Megasphaera genomosp. type_1 str.
            28L]
          Length = 1163

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1034 (35%), Positives = 587/1034 (56%), Gaps = 30/1034 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSL +G   +  ++    A   PAIA+TD  N++ A+   ++A A GI+PI
Sbjct: 4    FVHLHVHTQYSLFDGLCRIPEMVQMAKAMNMPAIAVTDHGNMYGAVHLYKEAKAQGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQSV 129
            +GC++ +      +   + +     +  ++LL    +GY  L+++VS+ Y+         
Sbjct: 64   LGCEIYMTRGSRFEKKTRER-----LCHLILLAKNTQGYHNLVKIVSKGYVDGVNNYHKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L++   EG+I L+    G I +    +    A K L     +FG D  Y+ +Q 
Sbjct: 119  RVDYELLEQYH-EGIIALSACIEGHIQQDILNHDEAAAIKTLQRLTGIFGKDDFYLEVQN 177

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +     +   + +    + LVATN+  +L + D  A +V + ++  + ++  D  +
Sbjct: 178  HGIPEEKIVRRVFKEWSQQFGIRLVATNDYHYLKKNDAPAQEVKLCISTGSTLNNPDHFK 237

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  Y+K+  EM  +F D+PEAL  T+EIA +C+  L+     +P F     +     
Sbjct: 238  FFNDSFYMKSYEEMAELFPDMPEALATTLEIAEKCNVELKFDERHVPSFPVPSGE----T 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            + + LR      L  +            +  R+R+D+EL++IA+M F  YFLIV D++++
Sbjct: 294  DASYLRKLCEQSLPEKYP-------TVTETVRKRVDYELDIIAQMGFPSYFLIVWDYVKF 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ ++IPVGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R++MPD D+DFC + 
Sbjct: 347  ARDHHIPVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVTMPDIDMDFCYEN 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R ++I YV  KYG + V+QIITFG+L AKA LRDVGR L++P S+V+R+ K++PN+    
Sbjct: 407  RSKIIDYVTRKYGKDHVSQIITFGTLAAKAVLRDVGRVLEIPLSEVNRIVKMVPNELGMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+      RE    DP + R + + + LEGL RHASTHAAGIVI   P+   +P+ 
Sbjct: 467  LD-KALEQSRELRETVAKDPQIQRWMALGKALEGLVRHASTHAAGIVISAAPIDDYIPLQ 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
               +     TQ++ + +E+ GL+K DFLGL+TLT++  ++  + +     +D   IP DD
Sbjct: 526  Y-SKEGYLTTQYDKELVEELGLLKMDFLGLRTLTVIGDTIKLIKENHGTDIDPDHIPLDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
              T  +LT   T G+FQ+ES G+   ++ + P   ED+I LV+LYRPGP+ + +   +  
Sbjct: 585  EATCRMLTMGDTAGVFQMESDGITALVKELAPKHFEDMIPLVALYRPGPLGSGMVEDFIK 644

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R +G+  +  +HPL++P+L++T GVI+YQEQVMQIA  + G++L +AD+LRRAMGKK + 
Sbjct: 645  RSHGETAVTYLHPLLEPILRDTYGVILYQEQVMQIASSMGGFTLGQADLLRRAMGKKKES 704

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  Q++ F++G   NGI   +A  +F+L+  FA YGFNKSH+AAYA +++QTA++K HY
Sbjct: 705  ILKAQRDLFLAGTRANGIEDEVAHKVFDLMVYFAGYGFNKSHSAAYAYVAWQTAYLKAHY 764

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
              E +AA+MT  +++V KI  +  + R+  I ++ P VNT    F V + RI + L+ +K
Sbjct: 765  RAELMAATMTSMINDVAKISYYISECRRHGIAVLSPDVNTSVSTFSVENGRIRFGLSGVK 824

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      I++      PF SL DFCSRV+   +NRRV+ESL+  GA+D FG  R QL+
Sbjct: 825  NVGENVIAVILQERQEGGPFTSLSDFCSRVNYHVVNRRVIESLIRCGAMDSFGKYRSQLI 884

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFSVENSSVRFENEQRVLGF 961
            Q LD         +K+R      +F  +    +   ++  +    +   R   E+   GF
Sbjct: 885  QVLDRAMALGASKQKDRDTGQMGLFDEDDTEEALFDLSYPEIEEFSIEERLAMEKEYDGF 944

Query: 962  YFSGHPLDVYKPILRKMGIKGY--EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            YFSGHPL+ YK  +  +        E      G  I    ++ ++++  T++   +  +T
Sbjct: 945  YFSGHPLNKYKEQMAALTPLSALYGEHARQYDGKEIYCGGLISTQRRVTTKRKDLMAILT 1004

Query: 1020 FSEPAKEYEANFFP 1033
              +  +   A  FP
Sbjct: 1005 LEDYTQTVTAVVFP 1018


>gi|84389777|ref|ZP_00991329.1| DNA polymerase III subunit alpha [Vibrio splendidus 12B01]
 gi|84376878|gb|EAP93752.1| DNA polymerase III subunit alpha [Vibrio splendidus 12B01]
          Length = 1159

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1048 (39%), Positives = 605/1048 (57%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFVHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPALALTDFTNLCGLVKFYGTAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG               Q       +  + ++ +  +GY  L  L+S+ YL   
Sbjct: 60   CGVKPIIGADF----------LMQSPDFGDELTKLTVIATNNKGYNNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I   WL E   EGLI+L+G   G I +A    + ++    +  +K  F DR Y+
Sbjct: 110  VQHQPVIDKEWLIE-HAEGLILLSGAKEGEIGKALLKGNRELVASSVEFYKTHFADRFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        ++LA   +LP+VATN  +F+SE+ ++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEESYLHFALELAEQEDLPVVATNEVVFISEDLFDAHEIRVAIHDGFTMVDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   YL++  EM  +FSD+PEALEN+VEIA+RC+  +++       +       
Sbjct: 229  RRPKNYSSQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGE-----YFLPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA        +     +Y +RL  EL V+  M F GYFLI
Sbjct: 284  EGLAIEDFLIKKSEEGLERRLAFLFPDEKVRAERRPEYDERLKIELEVVNNMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 404  IDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +    +A +    E    D  V  L++  + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLEKAFLA-EPALPELYDGDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYADAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKEGKE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  +++LL    T  +FQLES GM+  ++ +QPD  EDIIALV+L+RPGP
Sbjct: 583  PVRIESIPLDDQASFNLLQNSETTAVFQLESRGMKDLIKRLQPDSFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E +        H  +   L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAVSYPDETWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRGTFKEGAEANGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVIGLVDECFRMKLKLLPPDINSGLYR 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVDEDGAIVYGIGAIKGVGEGPIEAIIEARNKGGYFKDLFDFCARLDLKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GALD  G  R  ++ SL +  K A       +    ++F        + +    +  
Sbjct: 883  ILSGALDRLGPHRAAMMASLKDAVKAASQHHHAESFGQSDMFGVLTDAPEEVEHKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ 
Sbjct: 943  KWPEKVWLEGERETLGLYLTGHPVNAYIKELAKYTSCRLKDATPTRRDQSLTIAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|320537716|ref|ZP_08037642.1| putative DNA polymerase III DnaE [Treponema phagedenis F0421]
 gi|320145453|gb|EFW37143.1| putative DNA polymerase III DnaE [Treponema phagedenis F0421]
          Length = 1139

 Score =  787 bits (2032), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1029 (36%), Positives = 567/1029 (55%), Gaps = 23/1029 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS YSLL+GA S+  ++       QPA+A+TD  N+F  L F ++     I+P
Sbjct: 2    DFVHLHVHSDYSLLDGASSIQKLVSTAKKLGQPALALTDHGNMFGVLRFQEECKKQEIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC+L +  +       Q          ++L+     GY+ L+ L S+ Y  +      
Sbjct: 62   LIGCELYVAAKSRFDRNKQ--INGRNYYHLILIAKNEIGYRNLMVLSSKAYT-EGMYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +  +EGLI L+   +G +         + AE  +  +  +FGD  ++ +Q H
Sbjct: 119  RID-DELLQAHSEGLICLSACLAGQLPYLLLNGRKEEAEAHVRKYLDIFGDNYFIEVQNH 177

Query: 190  RGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ + +  ++++A    +P+V TN+  +  ++D  A D+L+ +    V +  +R + 
Sbjct: 178  GLAEQKKVTPLLIEMARKLGIPMVLTNDVHYAEQKDSVAQDILLCIGMKKVRTDTNRMKF 237

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T   YLK+  EM  +F + PE + NT+ IA  C+  +    P+LP +   E       +
Sbjct: 238  ETDQFYLKSAEEMAKLFPEYPEMMSNTLRIADMCNVEIPQPGPLLPVYKIPEEF---ASK 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  +R+    GL+               + ++R ++EL++I +M F GYFLIV DFI WA
Sbjct: 295  DLYIRHLVAEGLK-------TRYEVITDEIKKRAEYELDIIIKMDFVGYFLIVWDFINWA 347

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K ++IPVGPGRGSGAGS+ AYA+ ITDIDPLR+ LLFERFLNP+R+SMPDFD+DFC +RR
Sbjct: 348  KNHDIPVGPGRGSGAGSIVAYAMRITDIDPLRYKLLFERFLNPERISMPDFDVDFCFERR 407

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVI YV+ KYG E V QIITFG+L+ KAA++DVGR L +P + V+ + KL+P DP   +
Sbjct: 408  QEVIEYVRQKYGDESVGQIITFGTLKPKAAIKDVGRVLNIPLADVNMITKLMPEDP--KL 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            + +         + +   P    L +I++ LE   R+ S HAAGIVIG   L+  VP+Y+
Sbjct: 466  TFEKALTIPELVQIKET-PEYTELFQIAEALEDSNRNTSLHAAGIVIGKTKLTDYVPLYK 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVDLSLIPFD 604
            D ++    TQF M  IE+ GL+K DFLGLKTLTL++ + D + +RG       +  I  D
Sbjct: 525  DSKTGKIATQFTMDLIEQCGLVKMDFLGLKTLTLIKHTEDLIRRRGGALANFSIQNICDD 584

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY +L    +  +FQ ES GM+  L+  +PD IED+IAL +LYRPGP+  I  +   
Sbjct: 585  DERTYKMLGEGMSAAVFQFESKGMQGILKRAKPDKIEDLIALNALYRPGPMAFIDQFIES 644

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K    KI    P +  +L+ET GVI+YQEQVMQ+AQ + G SL EAD+LRRAMGKK KE 
Sbjct: 645  KFDNSKIKYPDPCLQDILEETYGVIVYQEQVMQVAQKIGGLSLGEADILRRAMGKKKKEV 704

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M + K +F   A   G  K  A  IF++L  FA YGFNKSHAAAY+V++YQTA++K ++P
Sbjct: 705  MAEWKVKFAERAVTQGFDKKHAEEIFDILVPFAGYGFNKSHAAAYSVLAYQTAYLKANFP 764

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EF+AA++T E+ +V+K+  + ++A +  + I+PPS+N     F V    I +    IKG
Sbjct: 765  AEFMAANLTNEITSVDKLPVYIEEAEKMGLTIVPPSINKSEPYFSVDKGEIIFGFLGIKG 824

Query: 845  VGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG   A  I      +  + S  DF  RVD   + +  +E L+  G  D F  +R  L+ 
Sbjct: 825  VGEQAAIDIYNERKTNGMYKSFIDFLDRVDLHTVKKSTVEVLIKTGCFDEFDINRATLIG 884

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
              +    YA   ++ + +   ++F +            +        +   E+ ++GFY 
Sbjct: 885  QYEAAMGYATQKKEGQESGQVSLFENTGIKEFSDFVFARVEDLPQKEKLRMEKDLVGFYI 944

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            SGHPLD Y+ I+                     +  M+ + +   T+KG  + + +F + 
Sbjct: 945  SGHPLDEYRKIIETTATLDLGHLERATPEKKYLIVGMLNAIKPYTTKKGQSMAFGSFEDL 1004

Query: 1024 AKEYEANFF 1032
                +  FF
Sbjct: 1005 HGVIDLVFF 1013


>gi|187918442|ref|YP_001884005.1| DNA polymerase III subunit alpha [Borrelia hermsii DAH]
 gi|119861290|gb|AAX17085.1| DNA polymerase III alpha subunit [Borrelia hermsii DAH]
          Length = 1147

 Score =  787 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1035 (37%), Positives = 597/1035 (57%), Gaps = 23/1035 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++    FVHL VHS YSLL+GA  + +I+ K        IA+TD  NLF A+ F ++A  
Sbjct: 1    MDLKVDFVHLHVHSDYSLLDGAAKITDIVAKAKKCNMSHIALTDHGNLFGAVRFYREAKR 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  +      K   +          ++LL     GY+ L++L S  YL + 
Sbjct: 61   VGIKPIIGIEAYMS--SISKHIKKNDEFGKPYYHLILLAKNELGYKNLLKLTSISYL-EG 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 R+    +++  +EGLI  +    G I +    N    A+  +L FK +FGD  Y+
Sbjct: 118  FYYRPRMDKGDIEKY-SEGLICTSACIGGIIPQLILANRFDDAKNEILWFKSIFGDDFYL 176

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH    +     +++  +    +PL  +N+S +++  D  A D+++ +      S  
Sbjct: 177  ELQRHGIKQQDIVNEKLISYSRELNVPLTVSNDSHYVNRGDATAQDIIVCIGTGAKRSDP 236

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRFIEKECD 301
            +R ++ T + Y+K++ EM  +F DLPEAL NT++IA +C+ F ++   PI P +      
Sbjct: 237  NRLKMETDEFYIKSQEEMCELFRDLPEALANTLKIAEKCNDFEIKFPGPIFPEYQVPSEF 296

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D        L    + GL+                 ++R  +EL+ I +M F  YFLIV 
Sbjct: 297  D---TLGQYLEYLTLEGLK-------FRYASITDSIKERAFYELSTIIKMGFEAYFLIVW 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++A  N IPVGPGRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID
Sbjct: 347  DFIKFAHDNGIPVGPGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERVSMPDFDID 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC + RDEVI+YV  KYG ++VAQIITFG+L+ KA  +DVGR L +P+++ + L KLIP+
Sbjct: 407  FCFEGRDEVIKYVTRKYGEDKVAQIITFGTLKPKAVFKDVGRVLDIPFAESNELTKLIPD 466

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P   VSL+ + +D   +E        + L+E +  LEG+ RH STHAAGIVI   PL+ 
Sbjct: 467  GP--KVSLREVFEDGSLKEYLNKGAVYNELMEAALVLEGMNRHVSTHAAGIVIARTPLTD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
             VP+Y+D + D   TQ+ M  +E  GL+K DFLGLKTLTL++ + + +        ++ I
Sbjct: 525  YVPLYKDYKQDTVSTQYTMDLLEDCGLVKMDFLGLKTLTLIKNAENLIKITNPDFSIANI 584

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
               D +T+ +L+   +  +FQ ES GM+Q L   +PD IED+IAL +LYRPGP+  I  +
Sbjct: 585  SDSDAKTFKMLSEGRSASVFQFESEGMQQVLREAKPDSIEDLIALNALYRPGPMQFIPQF 644

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K G ++I   HP +  +L+ T GVI+YQEQVM++A++++G+SL +AD+LRRAMGKK 
Sbjct: 645  IAAKTGTKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIAGFSLGKADILRRAMGKKK 704

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            ++EM+K K  FI GA   G  +T+A +IFELL  FA YGFNKSHAAAY++I+YQTA++K 
Sbjct: 705  EDEMNKMKVDFIKGALSKGYDETLANDIFELLKPFAGYGFNKSHAAAYSLIAYQTAYLKA 764

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +YP  F+AA++T E++N EK+  +  +A+   I ++ P +N    +F++  + I Y L  
Sbjct: 765  NYPENFMAANLTNEINNTEKLSYYIDEAKSMGIDVLKPDINQSFKEFRIVGHNISYGLNG 824

Query: 842  IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK +G      I+     +  + S EDF  RVD K +N++ LE+ + +G  D  G +R  
Sbjct: 825  IKNIGGLIVDLIIAERQENGEYKSFEDFIRRVDDKVINKKFLEAAIKSGLFDSLGQNRKT 884

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRV 958
            L ++LD +  +    + ++     ++F+    +    +  +   F   +     + E+ +
Sbjct: 885  LFENLDKLIAFVAKDKNDKKLGQNSLFSSLESQDVIVESFSYHVFEEYSYPELLKFEKDL 944

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGW 1017
            LGFY SGHPLD YK  L++       E +A  +   ++ A  + + +   T+K + R+ +
Sbjct: 945  LGFYVSGHPLDPYKSELKRFTNFNILEDLAVRKNTIVKFAGSLSTVKVIHTKKNNARMAF 1004

Query: 1018 VTFSEPAKEYEANFF 1032
                +     +   F
Sbjct: 1005 GVIEDFKGVIDIVVF 1019


>gi|225376830|ref|ZP_03754051.1| hypothetical protein ROSEINA2194_02472 [Roseburia inulinivorans DSM
            16841]
 gi|225211326|gb|EEG93680.1| hypothetical protein ROSEINA2194_02472 [Roseburia inulinivorans DSM
            16841]
          Length = 1170

 Score =  787 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1060 (34%), Positives = 570/1060 (53%), Gaps = 53/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ +SLL+G+  +   + ++      + AITD   +F  ++F + A AAGI P
Sbjct: 2    AFTHLHVHTEFSLLDGSNKIKEYVARVKELGMNSAAITDHGVMFGVIDFYKAAKAAGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +                     +VLL    EGYQ L+++VS+ + +D      
Sbjct: 62   ILGCEVYVAPNSRFDREAAHGE--DRYYHLVLLAENNEGYQNLMKIVSKGF-VDGYYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+ +  LQ+  + G+I L+   +G + R         A+K    ++  FG    ++ LQ 
Sbjct: 119  RVDMEVLQQYHS-GIIALSACLAGEVQRYLVKGLYDEAKKVAEKYENCFGKGNFFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++     Q+V+++    + LVATN+  +   ED EAHD+L+ +     +S ++R R
Sbjct: 178  HGIPEQQMVNPQLVRMSQETGIELVATNDVHYTYAEDAEAHDILLCIQTGKKLSDENRMR 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  EM  +FS   +A++NT +IA RC   ++     LP F   E  D    
Sbjct: 238  YEGGQYYVKSEEEMRKLFSFASQAIDNTQKIADRCHVEIEFGVTKLPHFEVPEGYD---- 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GL  R            ++   +LD+ELNVI +M +  YFLIV DFI +
Sbjct: 294  SWTYLNKLCHEGLVKRYPD-------RHEELLPKLDYELNVIRKMGYVDYFLIVWDFINY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ + IPVGPGRGS AGS+ +Y   IT+IDP++++LLFERFLNP+R++MPD DIDFC +R
Sbjct: 347  ARTHGIPVGPGRGSAAGSLVSYTTGITNIDPIKYNLLFERFLNPERVTMPDIDIDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG + V+QI+TFG+L AK  +RDVGR + +PYS  D + K+IPN+    
Sbjct: 407  RSEVIDYVVKKYGKDCVSQIVTFGTLAAKGVIRDVGRVMDLPYSFCDTIAKMIPNELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   R    +D +V  L+++S++LEGL RH S HAAG+VI  + + + VP+ 
Sbjct: 467  IE-KALQMNPELRGMYESDENVRTLIDMSKRLEGLPRHTSMHAAGVVISQKAMDEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            R        TQF M  IE+ GL+K DFLGL+TLT+++ + D + +             + 
Sbjct: 526  RAS-DGTITTQFIMTTIEELGLLKMDFLGLRTLTVIKDAADLVYKNHGIKIDVNHIDYND 584

Query: 607  ET--------------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             T                 + T  T G+FQLES+GM+  ++ ++P  +ED+IA +SLYRP
Sbjct: 585  HTDPDAVLIDYNDKKVLDYIGTGRTEGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRP 644

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP+D I  Y   KN ++ I      ++P+L+ T G I+YQEQVMQI Q L+GY++ +AD 
Sbjct: 645  GPMDFIPKYIKGKNERDSITYECKELEPILEPTYGCIVYQEQVMQIVQELAGYTMGQADN 704

Query: 713  LRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKS 764
            +RRAM KK +  +D +++ F+         G   N IS+  A  I++ +  FA Y FNKS
Sbjct: 705  IRRAMSKKKQYVIDAERQNFVYGNEEQGIKGCIANDISEQAANKIYDSMVDFAKYAFNKS 764

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAAAYAV+SYQTA+ K +YPVEF+AA MT  +DN  K+ ++    RQ  I+++PP VN  
Sbjct: 765  HAAAYAVVSYQTAYFKYYYPVEFMAALMTSVIDNTRKVSEYIFTCRQMGIKVLPPDVNEG 824

Query: 825  CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883
               F    + I Y L AIK +G      I++    +  + +L+ F  RV  +++N+R +E
Sbjct: 825  EGVFTAVGDNIRYGLYAIKSIGRPVVDLILQEREENGTYKTLQSFLERVSCREVNKRAVE 884

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLE 941
            +L+ AGALD    +R Q++     I       +K   +    +F    E+     +I L 
Sbjct: 885  NLIKAGALDGLDGNRQQMITVFSTIMDNLASEKKKSMSGQMTLFDLVPEEEKKDYEIRLP 944

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGN 993
            +    +  ++   E+ VLG Y +GHPL+ Y+   RK       +         V      
Sbjct: 945  QLEEYSKEIKLGFEKEVLGIYLTGHPLEEYEERWRKNISAVTTDFVLDEETNEVKVKDNQ 1004

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + +  M+  K  K T+    + ++T  +     E   FP
Sbjct: 1005 KVTVGGMITEKTVKYTKNNKVMAFLTLEDLVGTVEVIVFP 1044


>gi|255020984|ref|ZP_05293039.1| DNA polymerase III alpha subunit [Acidithiobacillus caldus ATCC
            51756]
 gi|254969589|gb|EET27096.1| DNA polymerase III alpha subunit [Acidithiobacillus caldus ATCC
            51756]
          Length = 1166

 Score =  787 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 432/1040 (41%), Positives = 616/1040 (59%), Gaps = 34/1040 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL VHS YSL +G + +  ++ +      PAIA+TD  NLF+ ++F Q A  
Sbjct: 1    MSTT-GFVHLHVHSEYSLEDGIIPIKALIRRCVDWGMPAIAVTDHGNLFALVKFYQAARE 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++ IIG ++ +   D  +             S+VLL     G++ L  L+SR YL   
Sbjct: 60   AGVKAIIGSEVWLCPPDQPE----------DPSSLVLLCRDRTGFRNLSRLLSRGYLEGL 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 ++   WL +  TEGLI L+  + G + RA   +   VA +    + + F +  Y+
Sbjct: 110  RHGRPQLQHDWL-QGHTEGLIALSAAARGDVGRALLQHQPDVARQWAERYAQWFPEAFYL 168

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+         +  V LAY  +LP+VATNN+ FL  ED++A D    +A    +  +
Sbjct: 169  ELQRNGEPGQEALLAATVDLAYALDLPVVATNNAHFLDAEDFKAFDARQCIAAGYTLDDE 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR   P+H L + +EM+  F DLPEA   TVEIA+RC+  L +    LP +   +   
Sbjct: 229  RRPRRFNPEHRLASPAEMLERFRDLPEACLQTVEIAKRCTVELTLGRYALPDYPTPDGSP 288

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            I    +   +  A  GL  RL    I        YR+RL  E++VI +M F GYFLIVAD
Sbjct: 289  I----DVYFQKAAEQGLAERLEALGIDGAAATP-YRERLLREVDVIRQMGFPGYFLIVAD 343

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK +++PVGPGRGSGAGS+ AYAL ITD+DP+ + LLFERFLN +R+SMPDFD+DF
Sbjct: 344  FIQWAKDHDVPVGPGRGSGAGSLVAYALRITDLDPIAYGLLFERFLNVERVSMPDFDVDF 403

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C ++RD VI+YV +KYG +RV QIITFG+L+A+A +RDVGR L +PY  VD+L KL+P D
Sbjct: 404  CMEQRDRVIQYVADKYGRDRVGQIITFGTLKARAVVRDVGRVLNLPYGFVDQLAKLVPGD 463

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A+ +    R  +  +  V  LL+I+ +LEG  RHASTHA G+VIG  PL+  
Sbjct: 464  LGMTL-ARALEESEELRRRQTEEDDVRELLDIALRLEGRPRHASTHAGGVVIGPEPLADR 522

Query: 543  VPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-----FLAQRGVKV 596
            +P++ D       VTQ +   +EK GL+KFDFLGL+TLT+L  ++        A+    +
Sbjct: 523  LPLFSDATEGSGNVTQLDKDDVEKMGLVKFDFLGLRTLTILDIAVKGINRARAAEGKAAL 582

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL  IP DD  T+ LL +  T+ +FQLESSGMR  L  +QPD   DI+ALV+L+RPGP+ 
Sbjct: 583  DLQKIPLDDPATFALLKSTHTVAVFQLESSGMRDLLRRLQPDNFGDIVALVALFRPGPLQ 642

Query: 657  NIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +   +  RK+G+  +   HP + P+L ET GV++YQEQVMQ AQ+L+GYSL  AD+LR
Sbjct: 643  SGMVDDFIARKHGRAAVSYPHPDLKPVLAETYGVMVYQEQVMQAAQILAGYSLGGADILR 702

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ+E F+ GA++ GI    A  IF+L+ KFA+YGFNKSH+AAYA++SY
Sbjct: 703  RAMGKKKPEEMAKQREIFLQGAARRGIDSHQAGAIFDLMEKFAEYGFNKSHSAAYALVSY 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K HYP  F+AA +T +MD+ +KI     + R+  + I+ PSV    ++F      
Sbjct: 763  QTAYLKAHYPSHFMAAVLTADMDHTDKIVAMIGECRRMGLAILSPSVQHSALEFLPVAEG 822

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L AIKG+G    + I+ A  AD PF    DF  RVD ++LNRR LE+L+ AGALD 
Sbjct: 823  IRFGLGAIKGLGRGAVQAIIAAREADGPFRDFYDFLCRVDLQRLNRRALEALIKAGALDD 882

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
             G SR  LL SLD   + A      R ++  ++    +   S      +        R +
Sbjct: 883  LGPSRECLLASLDAFLEAAAQTRAARDSQQISLLGAAEEQPS-APPWREAPAWTGIERLQ 941

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKG 1012
             E+  LGFY SGHPL  ++P L  MG    ++      G+  + +A +VV ++  ++++G
Sbjct: 942  RERETLGFYLSGHPLLEHRPQLAAMG---AQDLGGLTAGSGLVLVAGIVVGRRSTRSKRG 998

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
             RI ++T  +     +   F
Sbjct: 999  DRIYFLTLEDEVGRCDVVVF 1018


>gi|160931723|ref|ZP_02079117.1| hypothetical protein CLOLEP_00555 [Clostridium leptum DSM 753]
 gi|156869368|gb|EDO62740.1| hypothetical protein CLOLEP_00555 [Clostridium leptum DSM 753]
          Length = 1203

 Score =  787 bits (2031), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1048 (36%), Positives = 576/1048 (54%), Gaps = 41/1048 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              FVHL +H+ YSLL+GA  +N ++D   +    ++AITD  +++  ++F + A A GI 
Sbjct: 50   SGFVHLHLHTEYSLLDGACRINELIDTAVSQGAASVAITDHGSMYGVVDFYKAAKAKGIH 109

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC++ +  + +    ++  +       +VLL     GYQ L  +VS  ++ +     
Sbjct: 110  PIIGCEVYVSPRKHTDKIHEFDS---ENRHLVLLCKNNTGYQNLAAMVSEAWI-NGFYNK 165

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
             R+    L E  +EGLI L+   +G I RA        A+++ L + ++FG    Y+ LQ
Sbjct: 166  PRVDDEML-ETRSEGLIALSACLAGDIPRALVRGDYDAAKEKALKYNRIFGQGNFYLELQ 224

Query: 188  RHRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDR 245
             H   ++ + +  ++ L+    +PLV TN+  ++ +ED + H VL+ +  + T+    + 
Sbjct: 225  DHGIREQKQIAPMLIALSQETGIPLVVTNDCHYIHKEDSKMHQVLLCIQTNHTLEDDNNL 284

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               + + Y K   EM S+F  +PEA +NTV+IA  C+   +     LP F   +  D   
Sbjct: 285  EFGSDEFYFKTEEEMRSLFPQVPEACDNTVKIAEMCNVEFEFGNTKLPHFEVPDGQD--- 341

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                  RN+   G E      A          R+RL++ELN I  M +  Y+LIV DFI+
Sbjct: 342  -HFEYFRNQCYEGFEKYYGTNADPS------VRERLEYELNTIKTMGYVDYYLIVHDFIR 394

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK   IPVGPGRGSGAGS+ AY + IT IDP++++LLFERFLNP+R+SMPDFDIDFC +
Sbjct: 395  YAKSVGIPVGPGRGSGAGSIAAYCIGITGIDPIKYNLLFERFLNPERVSMPDFDIDFCYE 454

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV  KYG + VAQIITFG++ A+ A+RDVGRA+ MPY+ VD + KL+P +   
Sbjct: 455  RRQEVIDYVVRKYGADHVAQIITFGTMAARGAIRDVGRAMAMPYAAVDVIAKLVPMELGI 514

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +    +      +    ADP    L+++++K+EG+ R ASTHAAG+VI ++P+S  VP+
Sbjct: 515  TLERA-LKVSPELKARYDADPQTRELIDMARKVEGMPRQASTHAAGVVITEQPVSFYVPL 573

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                 +D  VTQ+ M  +E+ GL+K DFLGL+TLT+L  +   + ++     ++ +P DD
Sbjct: 574  --AKNNDAVVTQYTMTTLEELGLLKMDFLGLRTLTVLSDAEKMVRRKEPDFSIAHVPDDD 631

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
               Y +L    T G+FQ ES GM+  L  + P  +ED+IA++SLYRPGP+D+I  Y   +
Sbjct: 632  PAVYRMLAEGSTNGVFQYESGGMKNVLVQLGPQSLEDLIAVISLYRPGPMDSIPKYIENR 691

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +  E++  +HPL+  +L  T G I+YQEQVMQI + L+GYSL  AD++RRAM KK    M
Sbjct: 692  HHPERVTYLHPLLAGILDVTYGCIVYQEQVMQIFRTLAGYSLGRADIVRRAMSKKKHSVM 751

Query: 726  DKQKERFISG------------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            +K+++ FI G              + G+S+ IA  IF  +  FA Y FNKSHA AYA +S
Sbjct: 752  EKERKIFIEGLVGGDGTVEVEGCIRRGVSREIAEKIFAEMESFASYAFNKSHATAYAWVS 811

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA+MK HYP EF+AA +T  +DN  K+  + ++     IQ++PP+VN     F V   
Sbjct: 812  YQTAYMKYHYPKEFMAALLTSVLDNANKVAGYIEECSNMGIQVLPPNVNESGNGFTVTHG 871

Query: 834  RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I + L AI+ +G      ++E       + S   FC R+  +++NRR LESL+ +GALD
Sbjct: 872  SIRFGLLAIRNLGRGFIARLLEEREQGGKYTSFYQFCKRLHGREMNRRTLESLIKSGALD 931

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
              G +R Q+L   + +       +K   +     F        D+I         +S   
Sbjct: 932  GLGANRRQMLAVAETVLDNLDAEKKQNLDGQIGFFEAMGQAPRDEIAFPDVEEFPASELL 991

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT-------IRGNNIRLAAMVVSKQ 1005
              E+ + G Y SGHP+  Y     K+      E             G N+ L  ++ S +
Sbjct: 992  SMEKEITGMYLSGHPMAAYAQAAAKLNAAKIGEIAEAHGEYDRYHDGTNVTLLCIINSVR 1051

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K T+  S + +V   +     E   FP
Sbjct: 1052 LKTTKNNSTMAFVQIEDLYGGIEMLVFP 1079


>gi|89894058|ref|YP_517545.1| hypothetical protein DSY1312 [Desulfitobacterium hafniense Y51]
 gi|89333506|dbj|BAE83101.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1190

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1039 (37%), Positives = 592/1039 (56%), Gaps = 36/1039 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA  +  ++ K      P++AITD   ++  ++F +    AGI+PI
Sbjct: 3    FVHLHVHTEYSLLDGAARIEKLVKKAVELGMPSVAITDHGVMYGIIDFYKACKKAGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +      +              +VLL    EGY+ LI+LVS  ++ +      R
Sbjct: 63   IGCEVYVAPHRRTEKVPG---RDDNNRHLVLLAENEEGYKNLIKLVSMAHI-EGFYYKPR 118

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +    L++  + GLI L+   +G +      N  + A +  L ++++FG    ++ +Q H
Sbjct: 119  VDKDILRK-HSRGLIALSACLAGEVSEYLLNNQLETAVESALEYEEIFGKGNFFLEVQDH 177

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ R  + + ++     +P+VATN+  ++++ED    DVL+ +     ++   R   
Sbjct: 178  GLEEQQRVNTGMFEVQRRTGIPMVATNDVHYVNKEDAFIQDVLICIQTGKNLTDASRMSF 237

Query: 249  TPDHYLKNRSEMVS-IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            + + +       ++ +F + PE LENT  IA RC    +     LP F   E        
Sbjct: 238  SSEEFFLKSEAEMNLLFGEHPEILENTARIAERCQVDFKFGDNYLPVFEVPEG----YTL 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR K      +              + ++RLD+EL VIA+  FSGYFLIVADF Q+A
Sbjct: 294  DTYLRKKCYEAFPLFYPN-------QRTEEKERLDYELGVIAQTGFSGYFLIVADFCQYA 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++N I VGPGRGS A S+ AY + IT ++P++  LLFERFLNP+R+SMPD DIDF  D R
Sbjct: 347  RQNGIAVGPGRGSAAASMVAYLMGITTVEPMQHDLLFERFLNPERISMPDIDIDFDPDGR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            + VI YV  KYG ++V QIITFG++ AKAA+RDVGR L +P ++VD++ K IP+D    +
Sbjct: 407  ERVINYVMEKYGADKVCQIITFGTMGAKAAIRDVGRVLGIPLARVDKVAKAIPSDLGMTL 466

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+A      +    D  + +L EI++ LEG+ RHASTHAAG+VI    L   +P+ R
Sbjct: 467  E-KALAVSPDLVKLLEEDGEIKKLYEIARSLEGMPRHASTHAAGVVIAKDALDTYIPLQR 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
                   +TQF MK +E+ GL+K DFLGL+ LT++Q++L  +   RG  +DL  +P DD 
Sbjct: 526  TSDGGFTMTQFPMKTVEEVGLLKMDFLGLRNLTIIQETLKQIEGNRGEVLDLQSLPLDDK 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T+ +L+   + G+FQLES GMR  L+ ++P C EDIIA+V+L+RPGP++ I  +  RK+
Sbjct: 586  ATFDMLSLGNSTGVFQLESGGMRNVLKELKPSCFEDIIAVVALFRPGPMEQIPEFIRRKH 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G   +  +HPL++P+L+ T GVI+YQEQVMQIA+ L+GYSL  AD+LRRAMGKK KE M+
Sbjct: 646  GGN-VSYLHPLLEPILRSTYGVIVYQEQVMQIARDLAGYSLGRADLLRRAMGKKKKEIME 704

Query: 727  KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI             GA K G+++  A  IF+L+AKFA+YGFNK HA AYAVISY
Sbjct: 705  EERQSFIYGLQSPSGEEIIPGALKLGLTEKEAAEIFDLMAKFAEYGFNKGHATAYAVISY 764

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YP+EF AA ++  M + +K+  +  +ARQ  I+I+PP V    V F +    
Sbjct: 765  QTAYLKANYPLEFNAALISTVMSSADKVSFYIHEARQSGIEILPPDVQYSQVGFSIEGRG 824

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I + L AI+ VG      I+EA  +  F+SL DFC RVD+K LN+RVLESL+ AGA    
Sbjct: 825  IRFGLGAIRNVGVNVVEKIIEARQEGLFESLYDFCIRVDAKVLNKRVLESLLKAGAF-SL 883

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
               R Q L +LD+I + AQ  ++++ +   ++F        + I L      +       
Sbjct: 884  LCKRAQGLLALDSILEVAQQRQRDKESGQISLF-DFGDNLDEGIELPDVEEYSPRELLTM 942

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  LG Y SGHPL+   P L+    +     +       + L  +V   +   T++G  
Sbjct: 943  EKEYLGLYLSGHPLESVLPKLKNAVSEDILTCLEGDEEKKVILGGIVTGYRTTVTKRGEM 1002

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            +      +     +   FP
Sbjct: 1003 MASFVLEDLTGTIDVLVFP 1021


>gi|218665927|ref|YP_002425889.1| DNA polymerase III, alpha subunit [Acidithiobacillus ferrooxidans
            ATCC 23270]
 gi|218518140|gb|ACK78726.1| DNA polymerase III, alpha subunit [Acidithiobacillus ferrooxidans
            ATCC 23270]
          Length = 1166

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/1037 (41%), Positives = 624/1037 (60%), Gaps = 33/1037 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            ++P FVHL VHS YSL +G + +  +  + A    PA+AITD  NLF+ ++F   A   G
Sbjct: 2    RTPQFVHLHVHSEYSLEDGIIPVKALARRCAERGMPAVAITDHGNLFALVKFYNAARGQG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++P+IG ++ +      +             S+VLL     GY+ L  L+SR YL     
Sbjct: 62   VKPLIGSEVWVHDVAEPERPV----------SLVLLCMDKTGYRNLSRLLSRAYLEGSRH 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               +I ++WL E  ++GLI L+    G I RA      Q AE R   + +LF +R Y+ +
Sbjct: 112  GRPQIDVAWL-EGSSDGLIALSAAGQGEIGRAL-QRHPQQAESRARYYARLFPERFYLEV 169

Query: 187  QRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+   ++    Q  V LA   +LPLVATNN+ FL   D+ A D    ++    +    R
Sbjct: 170  QRNGEAEQEALVQATVALAEKLDLPLVATNNAHFLDAADFAAFDARQCISAGFTLDDPRR 229

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P R TP+H L +  EM   F+DLPEA +NTVEIARRC+  L +    LP +         
Sbjct: 230  PRRFTPEHRLPDPEEMRERFADLPEACDNTVEIARRCNMELVLGHYALPDYPIP----AN 285

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +  +  L + A  GL+ RL +  I        Y +RL  E+ VI +M F GYFLIVADFI
Sbjct: 286  QSVDEYLHDAAQKGLQERLQELRITGDATLP-YHERLLREVGVIQQMGFPGYFLIVADFI 344

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            QWAK N +PVGPGRGSGAGS+ AYAL ITD+DP+   LLFERFLNP+R+SMPDFD+DFC 
Sbjct: 345  QWAKNNGVPVGPGRGSGAGSLVAYALRITDLDPIGNGLLFERFLNPERVSMPDFDVDFCM 404

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D+RD VI+YV +KYG +RV QIITFG+++A+A +RDVGR L +PY  VD+L KL+P D  
Sbjct: 405  DQRDRVIQYVADKYGRDRVGQIITFGTMKARAVVRDVGRVLGLPYGFVDQLAKLVPGDLG 464

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+ +    R  +  +  V  LL+I+ +LEGL RHASTHA G+VI   PL+  +P
Sbjct: 465  MTL-AKALEESEELRRRQAEEDDVRDLLDIALRLEGLPRHASTHAGGVVISPEPLADRLP 523

Query: 545  MYRD-VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598
            ++ D       VTQ +   +EK GL+KFDFLGL+TLT++  ++  +            D+
Sbjct: 524  LFNDGSEGGGNVTQLDKDDVEKMGLVKFDFLGLRTLTIIDMAVKLINADAAAAGRAPVDI 583

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  T+ LL +  T  +FQLESSGMR  +  +QPD  EDI+ALV+L+RPGP+ + 
Sbjct: 584  QQLPLDDAATFALLKSTETAAVFQLESSGMRDLVRRLQPDTFEDIVALVALFRPGPLQSG 643

Query: 659  V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +   +  RK+GK ++  +HP + P+L+ET GVI+YQEQVMQ AQ L+GYSL  AD+LRRA
Sbjct: 644  MVDDFIARKHGKAQVTYLHPDLAPILRETYGVIVYQEQVMQSAQALAGYSLGGADLLRRA 703

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  EEM KQ+  F+ GA KNG++   A  IF+L+ KFA+YGFNKSH+AAYA++SYQT
Sbjct: 704  MGKKKPEEMAKQRSIFLEGAHKNGLAADQAGAIFDLMEKFAEYGFNKSHSAAYALVSYQT 763

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRI 835
            A++K HYP  F++A +T +MD+ +K+     +  +  ++I PPSV    ++F+   D+ I
Sbjct: 764  AYLKAHYPQFFMSAVLTADMDHTDKVVAMIAECARMGLRIAPPSVQHSVLEFRPEGDDHI 823

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             + L AIKG+G    + I++A     F +L D   RVD++K+NRR LE+L+ AGA+D +G
Sbjct: 824  RFGLGAIKGLGRAAIQAILDARRGGAFLNLFDLLCRVDTQKINRRALEALIRAGAMDDWG 883

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             SR  L+ S+D   + A   + ++ +  E++F+ ++        L      + +     E
Sbjct: 884  VSRASLIASVDGCMEAAAQFQSSQASLQESLFSGQEA-LRVAPPLVSAEAWSLTETLRQE 942

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  LGFY SGHP+D  +  L  +G     +      G+ + +A +VV+++  +T++G RI
Sbjct: 943  RETLGFYLSGHPMDSLRDDLTALGTIPLGDVA---VGSTVLVAGLVVARRSTRTKRGDRI 999

Query: 1016 GWVTFSEPAKEYEANFF 1032
             ++T  +     E   F
Sbjct: 1000 YFLTLDDGQGRLEVVVF 1016


>gi|238759934|ref|ZP_04621088.1| DNA polymerase III subunit alpha [Yersinia aldovae ATCC 35236]
 gi|238701841|gb|EEP94404.1| DNA polymerase III subunit alpha [Yersinia aldovae ATCC 35236]
          Length = 1171

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1049 (38%), Positives = 601/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A +
Sbjct: 12   MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHS 70

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q +     +  + +L    +GYQ L  L+S  Y    
Sbjct: 71   AGIKPIIGADFYV----------QSEILGDELAHLTVLARNNDGYQNLTLLISEAYQRGY 120

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL +   EGLI+L+GG  G + +     +    +  L  +++ F D  Y+
Sbjct: 121  GAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGKFMLRGNQAQVDLCLDFYQEHFPDSYYL 179

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  F+ E D++AH++ +A+     +   
Sbjct: 180  ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 239

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 240  KRPKNYSPQQFMRDEEQMCELFADIPEALFNSVEIAKRCNVTIRLGE-----YFLPQFPT 294

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE R+         +     +Y +RL+ EL VI +M F GYFLI
Sbjct: 295  GDMSTEDFLVEKSKQGLEERMELLFPDPEERAQKRPEYDERLEIELKVINQMGFPGYFLI 354

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 355  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 414

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 415  VDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 474

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 475  PPDPGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 533

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R       
Sbjct: 534  TDFAPLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 593

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 594  PIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 653

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL
Sbjct: 654  LQSGMVDNFIDRKHGREAISYPDIEWQHECLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 713

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA + GI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 714  GGADMLRRAMGKKNPAEMAKQRSVFEDGAKEQGIDGELAIKIFDLVEKFAGYGFNKSHSA 773

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    
Sbjct: 774  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 833

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      +++A  +   F  L D C+RVD+KKLNRR+LE L
Sbjct: 834  FHVNDEGEIVYGIGAIKGVGEAPIEAMLDARKEGGYFKELFDLCARVDTKKLNRRILEKL 893

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            V +GA D  G  R  L+ SL    K A    K       ++F          + +     
Sbjct: 894  VMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQADMFGVLADAPEQVEQSYANVP 953

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
            +    +  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +V++
Sbjct: 954  LWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTTAVGLVIA 1013

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1014 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|323495347|ref|ZP_08100425.1| DNA polymerase III subunit alpha [Vibrio brasiliensis LMG 20546]
 gi|323310418|gb|EGA63604.1| DNA polymerase III subunit alpha [Vibrio brasiliensis LMG 20546]
          Length = 1159

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1048 (39%), Positives = 607/1048 (57%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFIHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPAVALTDFTNLCGLVKFYGTAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG               Q       +  + +L +   GY+ L  L+S+ YL   
Sbjct: 60   CGVKPIIGADF----------LMQSAEFGDELTKLTVLAADNTGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I   WL E+ +EG+I+L+GG SG I +A    + +V    +  ++  F DR Y+
Sbjct: 110  VQHQPVIDKEWLVEL-SEGVILLSGGKSGEIGKALLKGNHKVVSDCVEFYQTHFPDRFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        ++LA   ELP+VATN+ + L E  ++AH++ +A+     +   
Sbjct: 169  ELTRTGRADEESYLHFALELAEQAELPVVATNDVVILDESLFDAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   YL++  EM  +FSD+PEALEN+VEIA+RC+  +++       +       
Sbjct: 229  RRPKNYSAQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGE-----YFLPAFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               EE   L  K+  GLE RL         +     +Y +RL  EL VI  M F GYFLI
Sbjct: 284  EGMEETEFLVMKSEEGLEERLEFLFPDPKVREERRPEYDERLKVELEVINNMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L   +  VDR+ KL+
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHGFGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   +    E    D  +  L+++ + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFKAEPALPELYENDEEIKELIDMCRILEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKA 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  +++LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVAIESIPLDDLASFNLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +   L  T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDETWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRGTFKEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++++PP +N     
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLKVLPPDINAGLYR 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVDETGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            ++AGALD  G  R  ++ SL +  K A    +       ++F    +     +    K  
Sbjct: 883  IYAGALDRLGPHRAAMMASLADAVKAASQHHQAEAFGQSDLFGVLTEAPEEVEHKYTKVE 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ 
Sbjct: 943  PWPEKVWLEGERDTLGLYLTGHPINAYIKELGKYTSCRLKDATPTRRDQSVTIAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|149377463|ref|ZP_01895205.1| DNA polymerase III subunit alpha [Marinobacter algicola DG893]
 gi|149358230|gb|EDM46710.1| DNA polymerase III subunit alpha [Marinobacter algicola DG893]
          Length = 1160

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1051 (39%), Positives = 597/1051 (56%), Gaps = 43/1051 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++  FVHL+VHS YS+++G + +  ++ ++A    PA+ +T+ +N+ S + F + A  
Sbjct: 1    MSQT--FVHLRVHSEYSMVDGLVRVKPLIGRVAELGMPAVGLTEQSNMCSLVRFYKAAMG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG  L ++  D                 I LL    +GY  L E+VS  Y   Q
Sbjct: 59   AGVKPIIGADLWVENPDEP----------DNPFRITLLARNNDGYLNLTEVVSLGYTEGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E  TEGLI L+G   G + +A       +A +R   +  L+    Y+
Sbjct: 109  RFGKPIIQRQWL-ENRTEGLIALSGARLGDVGKALMSGKLDLARQRAEYWMSLYPGSFYL 167

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR     D       V+LA     P+VATN+  FL  ED+EAH+  + +  S  +   
Sbjct: 168  ELQRTGRPGDEDCLHLNVELAEALGCPVVATNDVHFLHAEDFEAHEARVCIGESRTLDDP 227

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R +   YL++  EM+ +FSD+PEA+ENTVEIARRCS  +++    LP +   +   
Sbjct: 228  RRDRRFSDQQYLRSADEMIELFSDIPEAVENTVEIARRCSVPVRMGEYFLPNYPIPDGM- 286

Query: 303  IQKEEENELRNKAVAGLEVRLAQ----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                 +   R  +  GLE RLA+             + Y +RL+FEL++I +M F GYFL
Sbjct: 287  ---TMDEYFRKVSEEGLEERLAKTLSKDDPEYDSKREAYYKRLNFELDIIIQMGFPGYFL 343

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI+WAK N +PVGPGRGSGAGS+ AYA  ITD+DPL + LLFERFLNP+R+SMPDF
Sbjct: 344  IVMDFIKWAKNNGVPVGPGRGSGAGSLVAYAQLITDLDPLEYDLLFERFLNPERVSMPDF 403

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC + RD VI YV  KYG E V+QIITFG++ AKA +RDV R     Y   D+L K+
Sbjct: 404  DVDFCMEGRDRVIAYVAEKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKM 463

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP +P   +  +A+  + +  E    D     + E++ KLEG+ R+A  HA G+VI    
Sbjct: 464  IPFEPGMTLE-KALEQEPQLVEFLENDEEAQEIWEMALKLEGVCRNAGKHAGGVVIAPTK 522

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-- 596
            ++   P+Y D      VTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K   
Sbjct: 523  ITDFSPLYCDDEGGSLVTQFDKGDVEDAGLVKFDFLGLRTLTIIDWALKMINPRLEKQGK 582

Query: 597  ---DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
               D++ IP DD  ++ +L    T  +FQLES GM+  +  +QPD +ED+IALV+L+RPG
Sbjct: 583  PALDINEIPLDDVPSFDMLKKAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPG 642

Query: 654  PIDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V       +  +          +  + P+L+ T GVI+YQEQVMQIAQ+++GYS
Sbjct: 643  PLQSGMVDDFIDRKHGRQPMSFPHPDYQYEGLKPVLEPTYGVILYQEQVMQIAQVMAGYS 702

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQK+ F+ G   N I+KT+A NIF+L+ KFA YGFNKSH+
Sbjct: 703  LGNADMLRRAMGKKKPEEMAKQKQFFLDGCENNDINKTLAENIFDLVEKFAGYGFNKSHS 762

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+K HYP EF+AA +T +M N +K+    ++ R   ++++ P V+    
Sbjct: 763  AAYALVSYQTLWLKAHYPAEFMAAVLTADMQNTDKVVTLVEECRSMGLELLVPDVSRSEY 822

Query: 827  DFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLES 884
             F V  D  I Y L AIKG+G      I    AD  P+  + DFC RVD KK+N+R +E+
Sbjct: 823  TFTVNDDGAIVYGLGAIKGLGEGPIGSIQAGRADGEPYQDIFDFCRRVDLKKVNKRAMEA 882

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+ +GA+D  G  R QL+ S+D   + A    +N T    ++F        D       +
Sbjct: 883  LIRSGAMDKLGAGRAQLMASIDKAIQQAGQQSRNETVGMTDMFGDMLMGGEDGDPYSDVA 942

Query: 945  ---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                     R + E+  LG Y +GHP D Y+  +R+       +          R+A +V
Sbjct: 943  NVREWPKKERLKGEKDTLGLYLTGHPFDEYEKEVRRFVRSSIADLKPAR--QPQRVAGLV 1000

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V+++  KTR GS + ++T  + +   EA  F
Sbjct: 1001 VAQRSMKTRTGSTMAFITLDDRSARIEATLF 1031


>gi|327480169|gb|AEA83479.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri DSM 4166]
          Length = 1173

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1065 (39%), Positives = 611/1065 (57%), Gaps = 57/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL++H+ YSL++G + +  ++  +AA   PA+A+TD +N+ S ++F + A  
Sbjct: 1    MP--ASFVHLRLHTEYSLVDGLVRVKPLIKAVAAGGMPAVAVTDMSNMCSLVKFYKTAQG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI G  + +   D              +  + LL    +GY+ L EL+SR +   Q
Sbjct: 59   AGIKPICGADIWLAGCDE----------DGPLSRLTLLAMNPKGYRNLTELISRGWTEGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                V I   W++E   EGLI L+G   G I  A       +A  RL  ++++F DR Y+
Sbjct: 109  RNDLVIIEREWVKE-AAEGLIALSGAKEGEIGHALLNGDEALAASRLAEWREVFADRFYL 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR +R  D       V LA     PLVATN+  FL +ED+EAH+  + +     +   
Sbjct: 168  EVQRTNRVNDEEHLHAAVALAERSGAPLVATNDVRFLKQEDFEAHETRVCIGEGRTLDDP 227

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +   YLK   EM  +F+DLPEALENTVEIA+RC+  +Q+    LP F   E   
Sbjct: 228  RRPRTYSDQQYLKTPEEMAELFADLPEALENTVEIAKRCNIEVQLGTYFLPNFPVPEGMT 287

Query: 303  IQKEEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            I    ++ LR  +  GLE RL     +         Q Y  RL+FEL  I +M F GYFL
Sbjct: 288  I----DDYLRQVSFEGLEERLEVLLPKDTPDYEAKKQVYIDRLEFELGTIIQMGFPGYFL 343

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDF
Sbjct: 344  IVMDFIKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDF 403

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC D RD VI YV   YG   V+QIITFG++ AKA +RDV R     Y   DRL K+
Sbjct: 404  DVDFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKM 463

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP +    +      ++   R+    D     + E++ KLEG+ R    HA G+VI    
Sbjct: 464  IPFEVGMTLEKAYEMEEP-LRDFLAVDEDAREIWEMALKLEGITRGTGKHAGGVVIAPTK 522

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG----- 593
            L+   P+  D      VTQF+   +E+AGL+KFDFLGL+TLT+++ +L+ + +       
Sbjct: 523  LTDFAPIACDEEGGGLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWALETINREQAKKGL 582

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              V++  IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPG
Sbjct: 583  EPVNIDFIPLDDKPTYQLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPG 642

Query: 654  PIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +   + NRK+G+ ++   HP      ++P+LK T G+I+YQEQVMQIAQ+++GY+
Sbjct: 643  PLQSGMVDDFINRKHGRAEVSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYT 702

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  FI G + NGI   +A NIF+L+ KFA YGFNKSH+
Sbjct: 703  LGGADMLRRAMGKKKPEEMAKQRGGFIEGCANNGIDADLAGNIFDLVEKFAGYGFNKSHS 762

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAY ++SYQTAW+K H+P  F+AA ++ +M N +K+    ++ R   ++I PP VN    
Sbjct: 763  AAYGLVSYQTAWLKAHHPSPFMAAVLSADMHNTDKVVILIEECRSMKLRIDPPDVNVSEF 822

Query: 827  DFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLES 884
             F V  D RI Y L A+KGVG      I E  A+  PF  L DFC+R+D K++N+R LE+
Sbjct: 823  KFTVNDDGRIVYGLGAVKGVGEGPVEAIAECRAEGGPFKDLFDFCARIDLKRINKRTLEA 882

Query: 885  LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+ +GALD  G                +R  LL +++   + A+   ++  + H ++F  
Sbjct: 883  LIRSGALDRLGPYFFEEAKAYQANIDRNRAVLLAAMEEAVQAAEQTARSAESGHMDLFGG 942

Query: 930  EKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                    +          +   R + E+  LG Y +GHP+D Y+  +R+   +   +  
Sbjct: 943  LFAEPEADVYANHRNARELSLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLR 1002

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +A ++V+ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1003 PARGEQ--TIAGLIVNLRVMKNKKGDKMGFITLDDRSGRIEASLF 1045


>gi|219668439|ref|YP_002458874.1| DNA polymerase III subunit alpha [Desulfitobacterium hafniense DCB-2]
 gi|219538699|gb|ACL20438.1| DNA polymerase III, alpha subunit [Desulfitobacterium hafniense
            DCB-2]
          Length = 1190

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/1039 (37%), Positives = 591/1039 (56%), Gaps = 36/1039 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA  +  ++ K      P++AITD   ++  ++F +    AGI+PI
Sbjct: 3    FVHLHVHTEYSLLDGAARIEKLVKKAVELGMPSVAITDHGVMYGIIDFYKACKKAGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +      +              +VLL    EGY+ LI+LVS  ++ +      R
Sbjct: 63   IGCEVYVAPHRRTEKVPG---RDDNNRHLVLLAENEEGYKNLIKLVSMAHI-EGFYYKPR 118

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +    L+   + GLI L+   +G +      N  + A +  L ++++FG    ++ +Q H
Sbjct: 119  VDKDILRR-HSRGLIALSACLAGEVSEYLLNNQLETAVESALEYEEIFGKGNFFLEVQDH 177

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++ R  + + ++     +P+VATN+  ++++ED    DVL+ +     ++   R   
Sbjct: 178  GLEEQQRVNTGMFEVQRRTGIPMVATNDVHYVNKEDAFIQDVLICIQTGKNLTDASRMSF 237

Query: 249  TPDHYLKNRSEMVS-IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            + + +       ++ +F + PE LENT  IA RC    +     LP F   E        
Sbjct: 238  SSEEFFLKSEAEMNLLFGEHPEILENTARIAERCQVDFKFGDNYLPVFEVPEG----YTL 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR K      +              + ++RLD+EL VIA+  FSGYFLIVADF Q+A
Sbjct: 294  DTYLRKKCYEAFPLFYPN-------QRTEEKERLDYELGVIAQTGFSGYFLIVADFCQYA 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++N I VGPGRGS A S+ AY + IT ++P++  LLFERFLNP+R+SMPD DIDF  D R
Sbjct: 347  RQNGIAVGPGRGSAAASMVAYLMGITTVEPMQHDLLFERFLNPERISMPDIDIDFDPDGR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            + VI YV  KYG ++V QIITFG++ AKAA+RDVGR L +P ++VD++ K IP+D    +
Sbjct: 407  ERVINYVMEKYGADKVCQIITFGTMGAKAAIRDVGRVLGIPLARVDKVAKAIPSDLGMTL 466

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+A      +    D  + +L EI++ LEG+ RHASTHAAG+VI    L   +P+ R
Sbjct: 467  E-KALAVSPDLVKLLEEDGEIKKLYEIARSLEGMPRHASTHAAGVVIAKDALDTYIPLQR 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
                   +TQF MK +E+ GL+K DFLGL+ LT++Q++L  +   RG  +DL  +P DD 
Sbjct: 526  TSDGGFTMTQFPMKTVEEVGLLKMDFLGLRNLTIIQETLKQIEGNRGEVLDLQSLPLDDK 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T+ +L+   + G+FQLES GMR  L+ ++P C EDIIA+V+L+RPGP++ I  +  RK+
Sbjct: 586  ATFDMLSLGNSTGVFQLESGGMRNVLKELKPSCFEDIIAVVALFRPGPMEQIPEFIRRKH 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G   +  +HPL++P+L+ T GVI+YQEQVMQIA+ L+GYSL  AD+LRRAMGKK KE M+
Sbjct: 646  GGN-VSYLHPLLEPILRSTYGVIVYQEQVMQIARDLAGYSLGRADLLRRAMGKKKKEIME 704

Query: 727  KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            ++++ FI             GA K G+++  A  IF+L+AKFA+YGFNK HA AYAVISY
Sbjct: 705  EERQSFIYGLQSPSGEEIIPGALKLGLTEKEAAEIFDLMAKFAEYGFNKGHATAYAVISY 764

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YP+EF AA ++  M + +K+  +  +ARQ  I+I+PP V    V F +    
Sbjct: 765  QTAYLKANYPLEFNAALISTVMSSADKVSFYIHEARQSGIEILPPDVQYSQVGFSIEGRG 824

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I + L AI+ VG      I+EA  +  FDSL DFC RVD+K LN+RVLESL+ AGA    
Sbjct: 825  IRFGLGAIRNVGVNVVEKIIEARQEGLFDSLYDFCIRVDAKVLNKRVLESLLKAGAF-SL 883

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
               R Q L +LD+I + AQ  ++++ +   ++F        + I L      +       
Sbjct: 884  LCKRAQGLLALDSILEIAQQRQRDKESGQISLF-DFGDDLDEGIELPDVEEYSPRELLTM 942

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  LG Y SGHPL+   P L+    +     +       + L  +V   +   T++G  
Sbjct: 943  EKEYLGLYLSGHPLESVLPKLKNAVSEDILTCLEGDEEKKVILGGIVTGYRTTVTKRGEM 1002

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            +      +     +   FP
Sbjct: 1003 MASFVLEDLTGTIDVLVFP 1021


>gi|220909694|ref|YP_002485005.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 7425]
 gi|219866305|gb|ACL46644.1| DNA polymerase III, alpha subunit [Cyanothece sp. PCC 7425]
          Length = 1162

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1050 (36%), Positives = 577/1050 (54%), Gaps = 40/1050 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L +HS YSLL+GA  L  ++ +      PAIA+TD   ++ A+E  +      ++P
Sbjct: 2    SFVGLHIHSDYSLLDGASQLPELIGRAQELGMPAIALTDHGVMYGAVELLKTCRGKSVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
            IIG ++ +   D  K   + +         V+L     GY+ L++L S   L   QGK  
Sbjct: 62   IIGNEMYVINGDITKQERRPR------YHQVVLAKNNTGYKNLVKLTSISNLKGVQGKGI 115

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L +   EGLI+ +    G I +A      ++A +    +K LF D  Y+ 
Sbjct: 116  FSRPCINKELLTQYH-EGLIVTSACLGGEIPQAIMQGKPEIARRVAQWYKDLFKDDFYLE 174

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V+++    + ++ATN+S F+S  D EAHD L+ +    ++++  
Sbjct: 175  IQDHGSQEDRVVNVELVRISQELGIKIIATNDSHFISCYDVEAHDALLCIQTGKLITEDK 234

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL------PEALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R +   YLK+  EM  +F D        +A+ NT+E+A +         P  P F   
Sbjct: 235  RLRYSGTEYLKSAEEMALLFRDHLPEEVIKQAITNTLEVAEKIEPYDIFREPQSPHFPVP 294

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                     E  L + A  GL  R  +   ++     DYR+RL++EL ++ +M FS YFL
Sbjct: 295  AG----HTAETYLEDVAWQGLLKRCNKN--SRSEIEPDYRERLEYELKMLQKMGFSTYFL 348

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D+I++A+ + IPVGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 349  VVWDYIKYARDHGIPVGPGRGSAAGSLVAYAMGITNIDPVHHGLLFERFLNPERKSMPDI 408

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC DRRDEVI+YV  KYG +RVAQIITF  + +KA L+DV R L +PY + DR+ K+
Sbjct: 409  DTDFCIDRRDEVIKYVTEKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEADRMAKM 468

Query: 479  IPNDPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP     P  L+ +  D      F+E    DP+V   ++++ ++EG  +    HAAG+VI
Sbjct: 469  IPVSRGKPAKLKVMISDATPAPEFKEKYDKDPNVRHWIDMAIRIEGTNKTYGVHAAGVVI 528

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
               PL ++VP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT+++K+LD + Q   
Sbjct: 529  ASEPLDEIVPLQRN-NDGAVITQYFMEDLESLGLLKMDFLGLKNLTMIEKTLDLIKQHKK 587

Query: 595  KVDLSLIPFDDH-ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                      D  E+Y LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYRPG
Sbjct: 588  TDLDLDRLPLDDAESYKLLARGELEGIFQLESSGMRQVVRDLKPSNLEDISSILALYRPG 647

Query: 654  PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D   I  + NRK+G+E I   H ++ P+L ET G+++YQEQ+M+IAQ ++GYSL +AD
Sbjct: 648  PLDAGLIPKFINRKHGRENIDYPHEILKPILNETYGIMVYQEQIMKIAQDMAGYSLGQAD 707

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM K +E F+ GA+KNG+    A  +F+ +  FA+Y FNKSH+ AY  
Sbjct: 708  LLRRAMGKKKVSEMQKHQEIFVEGAAKNGVKSKTAQELFDQMVLFAEYCFNKSHSTAYGY 767

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K +YPVE++AA +T    + +K++K+        I + PP +N   VDF   
Sbjct: 768  VTYQTAYLKANYPVEYMAALLTANSGDQDKVQKYIGSCLSMGISVEPPDINRSGVDFTPL 827

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            +  I + L+A++ VG      I+ A     PF SL D C R+D + +NRR LE+L+  GA
Sbjct: 828  EKSILFGLSAVRHVGEGAIADILAARESAGPFQSLADLCDRIDPRTVNRRALEALINCGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-------KGTFSDKITLEKF 943
            +DC   +R QL+  L+ + +++Q   K+R     N+F            +F         
Sbjct: 888  MDCLELNRNQLIHDLELVLEWSQSRAKDRAIGQGNLFDMLGGSSTQSTSSFEAAPKAPPV 947

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                 + +   E+ +LGFY S HPL   +   R +                +    M+  
Sbjct: 948  PDLEQTEKLRLEKELLGFYISNHPLKEVQKTARILAPISLANLEDQPDNVTLSAIVMLTE 1007

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++  T+KG  +      +   + EA  FP
Sbjct: 1008 LKKVVTKKGDNMAIAQLEDLTGKAEAVVFP 1037


>gi|149192145|ref|ZP_01870366.1| DNA polymerase III subunit alpha [Vibrio shilonii AK1]
 gi|148834015|gb|EDL51031.1| DNA polymerase III subunit alpha [Vibrio shilonii AK1]
          Length = 1159

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1048 (39%), Positives = 612/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A +
Sbjct: 1    MSD-PKFIHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPAMALTDFTNLCGLVKFYGNAHS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++P+IG    +          Q       +  I +L +   GY  L  L+S+ YL   
Sbjct: 60   SGVKPLIGADFAV----------QSDEFGDELTRITVLAADNTGYNNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  +WL E+ +EGLI+L+G   G + +A    ++ +A++    ++  F DR Y+
Sbjct: 110  IQHQPVIDKAWLVEL-SEGLIVLSGAKEGDVGKALLKGNTTLAKQCAQFYQTHFPDRYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA   +LP+VATN  +F+ +E ++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEESYLHFAVELAEELDLPVVATNEVVFVDKELFDAHEIRVAIHDGYTLDDP 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP + +   YL++  +M  +F+D+PEAL+N+VEIA+RC+  +++       +       
Sbjct: 229  KRPKKYSAQQYLRSEEDMCELFADIPEALQNSVEIAKRCNVTVRLGE-----YFLPAFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               +E + L  K+  GLE RL         +     +Y  RL  EL+VI +M F GYFLI
Sbjct: 284  EGMKETDFLVMKSREGLEERLEFLFPDEAVRAERRPEYDDRLQIELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KLI
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   +    +    D  V  L+++ + LEG  R+A  HA G+VI    +
Sbjct: 464  PADPGMTLE-KAFKAEPALPQLYDGDEEVRDLIDMCRILEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYADSEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVRIESIPLDDSASFQLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E +        H  +   L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAVSYPDETWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRAVFEEGAINNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++++PP +N     
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLKVLPPDINAGLFR 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  +  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVNEEGAIVYGIGAIKGVGEGPIDVIIEARNKGGHFRDLFDFCARIDIKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GALD  G  R  ++ SL++  K A    +       ++F        D +    +  
Sbjct: 883  IMSGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQADMFGVLTDAPEDVEHKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ 
Sbjct: 943  PWPEKVWLEGERETLGLYLTGHPINAYLKELTKYTSCRLKDATPTRRDQSLTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|269960606|ref|ZP_06174978.1| DNA polymerase III subunit alpha [Vibrio harveyi 1DA3]
 gi|269834683|gb|EEZ88770.1| DNA polymerase III subunit alpha [Vibrio harveyi 1DA3]
          Length = 1159

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1048 (39%), Positives = 612/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL++HS +S+++G   +  ++ K+A    PA+A+TD  NL   +++   A  
Sbjct: 1    MSD-PKFIHLRIHSDFSMVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGTAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG    +          Q       +  + LL +  EGY+ L  L+S+ YL   
Sbjct: 60   SGVKPIIGADFKM----------QSDEFGEELTQLTLLAANNEGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  +WL E+ +EGLI+L+G  +G I +A    + +V +  +  + + F DR Y+
Sbjct: 110  VQHQPVLDKAWLAEL-SEGLIVLSGAKNGEIGKALLKGNRKVVDSCVEFYNQYFPDRFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        ++LA   ELP+VATN  +F+SE+ ++AH++ +A+     +   
Sbjct: 169  ELVRTGRPDEETYLHFAIELAEEVELPVVATNEVVFISEDLFDAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P+ YL+   EM  +F+D+PEALEN+VEIA+RC+  +++               
Sbjct: 229  RRPKNYSPEQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               EE + L  K+  GLE RL         +     +Y  RL  EL+VI +M F GYFLI
Sbjct: 284  EGMEETDFLVMKSREGLEERLEFLFPDEEERKQRRPEYDDRLQIELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +       +    E   AD  V  L+++ + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLEKA-FKAEPALPELYDADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYADSEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKD 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVRIESIPLDDAPSFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  + ++PP +N     
Sbjct: 763  AYALVSYQTLWLKMHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINAGLYR 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  +  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVDENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            ++AGALD  G  R  L+ SL++  K A    +       ++F        + +    +  
Sbjct: 883  IYAGALDRLGPHRAALMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ 
Sbjct: 943  AWPEKVWLEGERETLGLYLTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|319408651|emb|CBI82306.1| DNA polymerase III alpha subunit [Bartonella schoenbuchensis R1]
          Length = 1162

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 591/1030 (57%), Positives = 749/1030 (72%), Gaps = 8/1030 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS+YSLLEGAL +  I+    +D  PAIAITDTNNLF ALEFSQ     G+Q
Sbjct: 16   PRFIHLRVHSAYSLLEGALKIRQIIQHAISDHAPAIAITDTNNLFGALEFSQYCFTDGVQ 75

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGCQL ID +         K   P+   SIVL  ++  GY  LI LVSR YL  +   
Sbjct: 76   PIIGCQLAIDFEHENCDPRLIKPRNPSDFASIVLFAASEAGYAHLISLVSRAYLDKRDTD 135

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WL     EG+I LTGG +GPI+ A   N  + A + L   K++FGDRLYV LQ
Sbjct: 136  PPHIKADWLLS-QNEGIIALTGGWNGPINLALVENKKERAVEHLTYLKQIFGDRLYVELQ 194

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RH  YDR  E+ +V+LAY HE+PLVATN + FL++E YEAHD LMAVA   +VS  +R R
Sbjct: 195  RHSSYDRKVEAALVELAYEHEIPLVATNEAFFLNKEGYEAHDALMAVAEGQIVSNPNRRR 254

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD--IQK 305
            VTPDHYLK++ EMVS+FSDLPEALEN+VEIA RC   +    PILPRF E+  D     +
Sbjct: 255  VTPDHYLKSQDEMVSLFSDLPEALENSVEIALRCHTFVPTRKPILPRFTERSVDPDSALE 314

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +E  EL N+A  GL++RL    +A+GY  +DY QRLD+E++VI RM+F GYFLIV+DFI+
Sbjct: 315  DEAKELLNQAKVGLKMRLETIGLAEGYTVEDYEQRLDYEISVITRMQFPGYFLIVSDFIK 374

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQD
Sbjct: 375  WAKGHGIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRISMPDFDIDFCQD 434

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY QVD L KL+P+ P  
Sbjct: 435  RREEVIQYVQEKYGRDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLVPSMPGS 494

Query: 486  PVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             +    AI D+ +F+E +  +P + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVP
Sbjct: 495  NIELAVAIRDEPKFKEEKKKNPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVP 554

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            MYRD RSD+PVTQFNMK +E+AGL+KFDFLGLKTLT+L+ + DF+A++GVKVDLS I  +
Sbjct: 555  MYRDPRSDMPVTQFNMKCVEQAGLVKFDFLGLKTLTVLKMATDFVARKGVKVDLSHISLN 614

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY +L    T+G+FQ+ESSGMR+AL GM+PD IEDIIALV+LYRPGP++NI  YN R
Sbjct: 615  DETTYTMLARGETVGVFQVESSGMRKALIGMKPDRIEDIIALVALYRPGPMENIPTYNAR 674

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+GKE+I SIHP ID ++KETQGVI+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI +E
Sbjct: 675  KHGKEEITSIHPKIDHLVKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIHKE 734

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+ RF+ GA   GI K  A  IF+LLAKFADYGFNKSHAAAYA++SYQTA+MK H+P
Sbjct: 735  MQKQRTRFVRGAVDGGIDKDQADIIFDLLAKFADYGFNKSHAAAYAIVSYQTAYMKAHHP 794

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAASMT +M N +K+  F ++A +  I+++ P V T C  F++G+  IYYSLAAIKG
Sbjct: 795  VEFLAASMTCDMTNTDKLNDFRREALRLGIEVIAPCVQTSCRVFEIGEKCIYYSLAAIKG 854

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G     HI+    DKPF  LEDFC R+D + +N+R +ESL++AGALDCF  +R  LL S
Sbjct: 855  IGDLVVDHIVACRGDKPFKDLEDFCERIDPRIVNKRAMESLIYAGALDCFQVAREVLLAS 914

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L  +   A  +  N ++   +IF    G     I L + S  + + +  +E +V+GFYFS
Sbjct: 915  LGTLNARAIRIIDNNSSGQTDIFGMMGGPKEPLI-LSQASPWSLAEKLHHEFQVIGFYFS 973

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             HPLD Y+ IL K  ++ + +    ++      RLA  +V+KQ +KT+ G ++G + FS+
Sbjct: 974  AHPLDEYQTILTKKRVQIWSDFSDAVKKGATAARLAGTIVAKQIRKTKSGKKMGVIQFSD 1033

Query: 1023 PAKEYEANFF 1032
             +  YEA  F
Sbjct: 1034 TSGHYEAVIF 1043


>gi|168185626|ref|ZP_02620261.1| DNA polymerase III subunit alpha [Clostridium botulinum C str.
            Eklund]
 gi|169296453|gb|EDS78586.1| DNA polymerase III subunit alpha [Clostridium botulinum C str.
            Eklund]
          Length = 1167

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1062 (35%), Positives = 601/1062 (56%), Gaps = 58/1062 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YSLL+G+  +  ++++       ++AITD   +F  ++F +KA  AGI+PI
Sbjct: 6    FVHLHTHTEYSLLDGSGKIGGLINRAKELGMDSLAITDHGTMFGCVDFYKKAKEAGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG ++ +  +      N  +        +VLLV    GY+ L+++VS+  + D      R
Sbjct: 66   IGSEIYVASKSMNIKRNDSEN---KNHHLVLLVKNEIGYKNLMKIVSKAAI-DGFYYKPR 121

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   +L+E  +EGLI L+   +G +       + + A +  L +K +F +  Y+ LQ H 
Sbjct: 122  VDHEYLKE-HSEGLIALSACLAGEVSYNLLNGTKEKAREVALFYKDIFKEGFYLELQYHG 180

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               + R    +++L+   ++PLVATN+  ++ +ED ++HDVL+ +     +  +DR R  
Sbjct: 181  IDKQLRVNEMLIELSRELDIPLVATNDVHYIKKEDAKSHDVLLCIQTGKTLDDEDRMRYE 240

Query: 250  PDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P ++  K+  EM + FS +PEALENTV+IA+ C+F    H   LP F   E     K+  
Sbjct: 241  PQNFYLKSPEEMYNTFSYVPEALENTVKIAQECNFDYIFHESKLPNFPLPEG----KDHF 296

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              ++     GLE       +       +  +RL++EL VI  M +  YFLIV DF +++ 
Sbjct: 297  EYMKELCYKGLE-------VRYSEITPELEERLEYELGVIKEMGYVDYFLIVWDFFRFSH 349

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ AY L IT IDP++++L+FERFLNP+R+SMPD D DFC +RR 
Sbjct: 350  EKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFLNPERVSMPDIDSDFCYERRG 409

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV  KYG + V+QI+TFG++  +A +RDVGRA+   Y++VDR+ K+IP      + 
Sbjct: 410  EVIDYVVEKYGKDNVSQIVTFGTMAPRACIRDVGRAMNYSYAEVDRIAKMIPTVLGITID 469

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+  +   +EA  +D  V  L+++++ LEGL RH STHAAG+VI  +PL   VP+ ++
Sbjct: 470  -KALEMNPELKEAYDSDNRVKELIDVARDLEGLPRHTSTHAAGVVIASQPLVNYVPLSKN 528

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
               +  VTQF M  +E+ GL+K DFLGL+TLT+++ ++D + +    K+DL  I F+D  
Sbjct: 529  --EEAIVTQFTMTTLEELGLLKMDFLGLRTLTVIRDAIDLIEENTGTKIDLDKINFEDEN 586

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
             Y +L    T+G+FQLES+GM   ++ ++P+ +EDIIA +SLYRPGP+  I  Y   KN 
Sbjct: 587  VYGMLGKGKTVGVFQLESAGMTNFMKELKPESLEDIIAGISLYRPGPMAEIPKYIKNKNN 646

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             + I  + P ++P+L  T GV++YQEQVMQI + L+GYS+  +D++RRAM KK  + M++
Sbjct: 647  PKNIEYLTPELEPILNVTYGVMVYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHKVMEE 706

Query: 728  QKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            +++ FI             G  KNGIS+  A  I++ +  FA Y FNKSHAAAYAV++Y 
Sbjct: 707  ERKNFIYGIEDEKGNVIVPGCLKNGISEDAANKIYDQMMDFASYAFNKSHAAAYAVVAYY 766

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++  +YP EF+AA +     N +K+  + + A+Q  I+++PP++N     F V + +I
Sbjct: 767  TAYLVYYYPTEFMAAILNSVRGNSDKVAVYIRAAKQMEIEVLPPNINKSFGKFTVQNGKI 826

Query: 836  YYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L+AIK VG     +I +   +   F+S  DFC+++ S  +N+R++ESLV AGA DCF
Sbjct: 827  CFGLSAIKNVGENVVDNIAKVREEKGEFNSFVDFCNKISSGSINKRMVESLVKAGAFDCF 886

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFE 953
            G  R Q+L   + I        K   +   ++F      F D +I        +   +  
Sbjct: 887  GIYRSQILAVYEKIIDSVVNQRKKNIDGQMSLFGSFDDEFKDTEIKYPAIDEFDKKNKLA 946

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV----------------------ATIR 991
             E+ + G Y +GHPL+ Y+ ILR        + +                          
Sbjct: 947  MEKEMTGLYLTGHPLEEYEEILRNRTSAKTTDIIVDESLEEELIDEVTLHVEEQNSKIKD 1006

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            G+ + +  ++ +  +K TR  S + ++T  +     E   FP
Sbjct: 1007 GDKVIICGLITNVTRKITRTNSMMAFITLEDLYSSIEVIIFP 1048


>gi|304312463|ref|YP_003812061.1| DNA polymerase III alpha subunit [gamma proteobacterium HdN1]
 gi|301798196|emb|CBL46418.1| DNA polymerase III alpha subunit [gamma proteobacterium HdN1]
          Length = 1173

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1043 (39%), Positives = 599/1043 (57%), Gaps = 32/1043 (3%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P+FVHL++H+ YSL++G + +  +++K A    PA+A+TD + L+  ++F +    A
Sbjct: 17   TSAPTFVHLRLHTEYSLVDGLVRVKKLVEKAAELGMPAVAVTDYSGLYGLVKFQKYGLPA 76

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G++PI G  + +   D     +           I LL    +GY+ + +LVS  +L  Q 
Sbjct: 77   GVKPIYGADIWLANLDVEGSPSL----------ITLLAMDVQGYRNITKLVSEAFLTGQR 126

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 +    L +   +G+I L+GG  G + +A        AE+       L+ DR Y+ 
Sbjct: 127  NGKAIVSRELLHQF-ADGIICLSGGRQGELGQALLQERPDRAEQIAREMAALYPDRFYLE 185

Query: 186  LQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +QR  R  D       V LA    LP+VATN+  FL   DYEAH+V + +     +    
Sbjct: 186  VQRTERAGDETYLHLAVALADRFALPVVATNDVRFLKRSDYEAHEVRVCINAGWTLDDPR 245

Query: 245  R-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R    +   YLK+  EMV++F+DLPEALENTVEIA+RC+  + +    LP +   E   I
Sbjct: 246  REMNYSDQQYLKSPQEMVALFADLPEALENTVEIAKRCNVEIPLGTYFLPDYPVPEGMTI 305

Query: 304  QKEEENELRNKAVAGLEVRLAQGA----IAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                ++ L ++A  GL  RLA                Y +RL  EL+ I +M F GYFLI
Sbjct: 306  ----DSYLVHQAEEGLNARLAFLYDITRPDFAEIRARYDERLRIELDCIIKMGFPGYFLI 361

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFIQWAK N +PVGPGRGSGAGS+ AYA+ ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 362  VADFIQWAKNNGVPVGPGRGSGAGSLVAYAIKITDLDPLEYDLLFERFLNPERISMPDFD 421

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC + RD VI YV  KYG + V+QIITFGS+ AKA +RDVGR     Y  VDR+ KLI
Sbjct: 422  VDFCMEGRDRVIDYVAEKYGRDAVSQIITFGSMAAKAVVRDVGRVQGKSYGFVDRIAKLI 481

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +    +    +  + + +E   AD  V  LL+++ KLEG+ R    HA G+VI    L
Sbjct: 482  PFELGMTLEKA-MEQEPQLKELYNADEEVHDLLDMALKLEGICRGVGKHAGGVVIAPSAL 540

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +  VP+Y D      VTQ++   +E+AGL+KFDFLGL+TLT++  +L  +  R  +    
Sbjct: 541  TNYVPLYCDETGHNLVTQYDKDDVEQAGLVKFDFLGLRTLTIIDWALGIINPRLQRKGEA 600

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ I  DD  T+ LL +  T  +FQLES GM+  ++ ++P   EDIIALV+L+RPGP
Sbjct: 601  AVDIARIRLDDPATFRLLQSAETTAVFQLESRGMKDLIKRLKPSVFEDIIALVALFRPGP 660

Query: 655  IDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            + + +   +  RK+GK+ +   HP + P+L  T G I+YQEQVM I Q+L+GYSL  AD+
Sbjct: 661  LGSGMVDDFIARKHGKQAVTYPHPDLKPVLDTTYGTILYQEQVMLIPQVLAGYSLGGADI 720

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  +EM KQ+  F  G +KN I + +A  IF+ + +FA YGFNKSH+AAYA++
Sbjct: 721  LRRAMGKKKADEMAKQRSIFTDGCAKNQIDEKLAGEIFDTMEEFAKYGFNKSHSAAYALV 780

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SYQTAW+K HYP  F++A ++ +M N +KI  F  + R+  +QI+ P VNT    F V D
Sbjct: 781  SYQTAWLKAHYPAGFMSAVLSADMHNTDKIVIFIDECRRMGLQIVSPHVNTSAYKFDVND 840

Query: 833  -NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             N I Y L AIKG+G      I+EA  A  PF  L +FC RVD KKLNRRVLE+L+ +GA
Sbjct: 841  ANHIVYGLGAIKGLGAGPIEAIIEARDAGAPFTDLFEFCRRVDMKKLNRRVLEALIRSGA 900

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            +D  G  R  +L SLD   K A    ++      ++F    G              +   
Sbjct: 901  MDGMGPDRAIMLASLDEAAKAAGQAAESADAGMMDLFGELGGAEEFTPAWSVAKPASPDE 960

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-ATIRGNNIRLAAMVVSKQQKKT 1009
              + E+  LG Y +GHP+D ++  L         +   +  R     +A +V++ +  K 
Sbjct: 961  LLQGEKDTLGLYLTGHPIDQFEEELSHFISSKICDVKPSQSRDQKSIIAGLVIAVRTMKN 1020

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
            ++G R+G++T  + +   E + F
Sbjct: 1021 KRGDRMGFLTLDDKSGRMEVSLF 1043


>gi|304396659|ref|ZP_07378540.1| DNA polymerase III, alpha subunit [Pantoea sp. aB]
 gi|304356168|gb|EFM20534.1| DNA polymerase III, alpha subunit [Pantoea sp. aB]
          Length = 1160

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1049 (40%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL+VHS YS+++G      ++ K AA   PAIAITD  NL   ++F   A +
Sbjct: 1    MAE-PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGGAHS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+P+IG   ++            +     +  + +L S+  GYQ L  L+SR Y    
Sbjct: 60   AGIKPVIGADFNVA----------SELMGDELTQLTVLASSNTGYQNLTLLISRAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R+    ++ +  + L  +++ F DR Y+
Sbjct: 110  GVDGPIIDRDWLIEL-QEGLILLSGGRRGDVGRSLLRGNNALVSQCLSFYQQHFPDRYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    +P+VATN   F++ ED++AH++ +A+     +   
Sbjct: 169  ELIRTGRQDEESYLHAAVELAIAEGIPVVATNEVCFINAEDFDAHEIRVAIHDGYTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +FSD+PEALEN+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA        +     +Y +RL+ EL VI +M F GYFLI
Sbjct: 284  GDMTTEDYLVVKSREGLEERLAFLFPDEAERAEKRPEYDERLEIELTVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKRDQVIEHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +    IA + +      AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLEKAFIA-EPQLPAMYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K  L 
Sbjct: 523  TDFAPLYCDEHGQFPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLE 582

Query: 600  L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                  IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIASIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA   GI   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSIFRDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYP 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I++A  +   F  L D C+R D+KK+NRRV+E L
Sbjct: 823  FHVNDAGEIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +    +
Sbjct: 883  IMSGAFDRLGPHRAALMSSLSDALKAADQHAKAEAIGQADMFGVLAEEPEQVEKSYASVT 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V+ + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVQLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKITVAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|307720929|ref|YP_003892069.1| DNA polymerase III subunit alpha [Sulfurimonas autotrophica DSM
            16294]
 gi|306979022|gb|ADN09057.1| DNA polymerase III, alpha subunit [Sulfurimonas autotrophica DSM
            16294]
          Length = 1204

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1088 (34%), Positives = 606/1088 (55%), Gaps = 70/1088 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K PSF HL +H+ YSLL+GA  L+N++ ++      ++A+TD  N+F A++F ++   
Sbjct: 1    MSKQPSFTHLHLHTEYSLLDGANKLSNLVSRVKELGMTSVAMTDHGNMFGAIDFYKQMKG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG +  I   + L     G         I L     +GY+ L+ L S+ ++ + 
Sbjct: 61   AGLKPIIGMEGYIHNGETL-----GDKSTKQRFHICLYAKNKKGYENLMYLSSKAFI-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  +EGLI  +    G ++      +           + A      +
Sbjct: 115  FYYFPRINKKELRE-HSEGLICTSACLQGEVNWHLNLQNERNVKNGALGYEGALNVAREY 173

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            + +FG+  Y+ L RH   D+ Y + Q+++++    + +VATN++ +   +D + H+  M 
Sbjct: 174  QDIFGNDFYLELMRHGIGDQLYIDEQILKISRETGIKIVATNDTHYTYPDDAQYHEAFMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            +  + +    +R R +  + Y+K+  EM  +F+D+PEALE+T EI  +    + +     
Sbjct: 234  IGMNKLYDDPNRMRHSVHEFYIKSPDEMARLFADIPEALEHTQEITNKIEDFVPIVKTPT 293

Query: 293  PRFI-------------------EKECDDIQKEE------------ENELRNKAVAGLEV 321
            P                          DD  +EE                  K   GLE 
Sbjct: 294  PPNFKFTQEYAKEEGLDIDYQDDPPLADDASEEEKKKWLSAADKNDAEYFIIKCREGLEK 353

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
            RL    I      Q+YR RL+FE+++I  MKF GY +IV DF++ AK+  + VGPGRGS 
Sbjct: 354  RLK---IVPKERHQEYRDRLEFEMDIINSMKFPGYMMIVWDFVKEAKRIGVAVGPGRGSA 410

Query: 382  AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
            AGS+ AY+L ITDIDP+++ LLFERFLNP+R+SMPD D+DF Q RR EVI YV  KYG  
Sbjct: 411  AGSLVAYSLEITDIDPMKYDLLFERFLNPERVSMPDIDMDFMQARRGEVIDYVTKKYGRN 470

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV---------SLQAI 492
            +VAQIITFGSL AK  +RDV R L MP S+ D++ KL+P++    +            A 
Sbjct: 471  QVAQIITFGSLLAKGVIRDVARVLDMPLSKADQMAKLVPDELGITLNGKTKNGEFKDGAF 530

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
              + + RE   +DP V R+ E ++KLEGL R+A  HAAG+VI +  L +  P+Y+    D
Sbjct: 531  QKEPKLRELVESDPQVGRVWEFAKKLEGLKRNAGMHAAGVVISNEELWKKTPIYKPSGED 590

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHL 611
              VTQ+++ ++E   LIKFDFLGLKTL ++  ++  + +R    +D   I  +D   Y +
Sbjct: 591  TFVTQYSLNYMEDVDLIKFDFLGLKTLDVIDNAIKLIKRRYDKDIDWHTIDENDKNVYDV 650

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKE 669
            + T  T+G+FQ+ESSGM+   + ++P   ED+IA+++LYRPGP+++ +   +  RK+G++
Sbjct: 651  IQTGETVGMFQIESSGMQDLNKRLKPSNFEDLIAVLALYRPGPMESGMLDDFIERKHGRQ 710

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +I  +   ++ +LK T GVI+YQEQVMQI Q + G+SL  AD++RRAMGKK  +EM K  
Sbjct: 711  EITYVFEALEEILKPTYGVIVYQEQVMQIVQTIGGFSLGGADIVRRAMGKKKVDEMLKYN 770

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F  GA+K G+    A  +F+L+ KFA YGFNKSH+AAYA++++QTAW+KT+YP EF+A
Sbjct: 771  KEFSEGAAKQGLDYKTASELFDLIEKFAGYGFNKSHSAAYAMVTFQTAWLKTYYPNEFMA 830

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGV 845
            A +T + DN EK+ ++  + ++  I++ PP +    ++F          I + L  IKGV
Sbjct: 831  ALLTSDKDNTEKVVRYIDEVKRMGIELSPPDICDSYLEFSAITKENREIILFGLGGIKGV 890

Query: 846  GTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            G      ++E    +  + SL+DF +R++  K+N+RV+E+++ +G  D +GYSR  LL  
Sbjct: 891  GEAAIHAMIEEREENGDYASLQDFVNRIEPSKVNKRVVEAIIKSGGFDRYGYSRKALLDQ 950

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            ++ I   A+   + + N   ++F  ++   + ++ L+           E E+  LGFY S
Sbjct: 951  IELIVDTAKKASEAKKNVVGSLFGDDEEITTVRLELKNSDEYELKEILEFEKDTLGFYVS 1010

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            GHP+D ++  L ++      E  +   G+       V   Q+K ++KG++ G V   +  
Sbjct: 1011 GHPMDDFREELDELNYTLSSELESIKDGSFAIFIGKVEEIQKKISKKGNQFGIVNLMDFH 1070

Query: 1025 KEYEANFF 1032
               E   F
Sbjct: 1071 GNIEIMLF 1078


>gi|163868512|ref|YP_001609721.1| DNA polymerase III subunit alpha [Bartonella tribocorum CIP 105476]
 gi|161018168|emb|CAK01726.1| DNA polymerase III alpha subunit [Bartonella tribocorum CIP 105476]
          Length = 1155

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 591/1038 (56%), Positives = 755/1038 (72%), Gaps = 8/1038 (0%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            + +Y    P F+HL+VHS+YSLLEGAL +  I+ +  +DQ PAIAITDTNNLF ALEFSQ
Sbjct: 1    MQEYKNSLPRFIHLRVHSAYSLLEGALKIPQIIQQAISDQAPAIAITDTNNLFGALEFSQ 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRM 119
               + G+QPIIGCQL ID  D    +   K    +   SI+L  ++  GY  L+ LVSR 
Sbjct: 61   YCLSHGVQPIIGCQLAIDFCDENDHSRLVKGRHASDFCSIILFAASETGYAHLVRLVSRA 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            YL         I   WL E  +EG+I LTGG  GPI+ A      + A +RL+  KK+F 
Sbjct: 121  YLDKCDTDPPHIKADWLSE-HSEGIIALTGGKGGPINLALSEEKKERAVERLIYLKKIFS 179

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            DRLYV LQRH  YDR  E+++++LAY HE+PLVATN + FL  E YEAHD LMAV+   +
Sbjct: 180  DRLYVELQRHGSYDRGVEAELIELAYAHEIPLVATNEAFFLKREGYEAHDALMAVSEGQI 239

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK- 298
            VS  DR RVTPDHYLK++ EMV++FSDLPEALEN+VEIA RC     +  PILPRFIE+ 
Sbjct: 240  VSNPDRKRVTPDHYLKSQDEMVALFSDLPEALENSVEIALRCHIATPLRKPILPRFIEQS 299

Query: 299  -ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               ++  + E++EL N+A AGL++RL    +A+GY   DY QRLD+E++VI RM+FSGYF
Sbjct: 300  AHSENTLEAEDSELLNQAKAGLKMRLETIGLAEGYTIADYEQRLDYEVSVITRMQFSGYF 359

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV+DFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPD
Sbjct: 360  LIVSDFIKWAKIHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPD 419

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ+RR+EVI+YVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY QVD L K
Sbjct: 420  FDIDFCQERREEVIQYVQKKYGRDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTK 479

Query: 478  LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP  P   V    AI D+ +F E +  DP V R L+I+ +LEGLYRHASTHAAGIVIGD
Sbjct: 480  LIPATPGSQVELADAIKDEPKFEEEKKKDPVVGRALDIALQLEGLYRHASTHAAGIVIGD 539

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL +LVPMYRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++DF+A++G K+
Sbjct: 540  RPLWELVPMYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVARQGDKI 599

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DLS IP +D  TY ++    T+G+FQ+ESSGMR+AL GM+PD IEDIIALV+LYRPGP++
Sbjct: 600  DLSNIPLNDEVTYAMMARGETVGVFQVESSGMRKALIGMKPDRIEDIIALVALYRPGPME 659

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            NI  YN RK+G+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRA
Sbjct: 660  NIPTYNARKHGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRA 719

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKKI  EM KQ+ RF++GA   G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQT
Sbjct: 720  MGKKIHAEMQKQRTRFVNGAVAGGVDKEQADIIFDLLAKFADYGFNKSHAAAYAIVSYQT 779

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A+MK +YPVEFLAASMT +M N +K+  F ++A +  I+++ PS+ T    F+VGD+ IY
Sbjct: 780  AYMKANYPVEFLAASMTHDMTNTDKLNDFRREALRLGIEVIAPSIQTSHRVFEVGDHCIY 839

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            YSLAAIKGVG T   HI+    +K F  LEDFC+RVD + +N+R +ESLV AGA DCF  
Sbjct: 840  YSLAAIKGVGETVVDHIVACRGNKIFKDLEDFCARVDLRIVNKRAMESLVCAGAFDCFNI 899

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  LL +L  I   A  +  N ++   +IF  E G     I L + +    + +   E 
Sbjct: 900  AREILLANLGTIHARALRILDNNSSGQFDIFGMEGGLKEPLI-LSQTTPWLPAEKLYREF 958

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSR 1014
            + +GFYFS HPLD Y+ IL K  ++ +      ++G     RLA  VV+K  +KT+ G +
Sbjct: 959  QAIGFYFSAHPLDEYQTILAKKRVQTWSHFANAVKGGATAARLAGTVVAKNVRKTKSGKK 1018

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            +G + FS+ + +YEA  F
Sbjct: 1019 MGIIHFSDTSGQYEAILF 1036


>gi|308048684|ref|YP_003912250.1| DNA polymerase III, alpha subunit [Ferrimonas balearica DSM 9799]
 gi|307630874|gb|ADN75176.1| DNA polymerase III, alpha subunit [Ferrimonas balearica DSM 9799]
          Length = 1165

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1055 (40%), Positives = 604/1055 (57%), Gaps = 45/1055 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL+VHS +S+++G   +  +L ++A    PA+A+TD  NL   ++F   A  
Sbjct: 1    MSE-PKFIHLRVHSDFSMVDGLAKVGPLLKRVAELGMPAVALTDQTNLCGLVKFYSGAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PIIG    +                     +V+L     GY  L EL+SR YL   
Sbjct: 60   SGIKPIIGADFWM----------LSPLQGDEQSRLVVLAMNNTGYANLTELISRAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL+E+G EGLI+L+G   G + +A    +  +A +    ++  F DR YV
Sbjct: 110  VDHRPVIDREWLEELG-EGLILLSGAKDGELGKALVKGNLAMAREIASFYQTHFPDRYYV 168

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     D       V  A    LPLVATN  +FL +ED+E H++ + +     +   
Sbjct: 169  ELHRTGRADDESYLHSAVDFADEMGLPLVATNEVVFLQKEDFEFHEIRVCIHDGYPLDDA 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +   YL++  EM  +F+D+PEAL+N+VEIA+RC+  +++       +   +   
Sbjct: 229  RRPRLYSEQQYLRSEEEMCELFADIPEALQNSVEIAKRCNVTVRLGE-----YFLPDFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               + E+ L   +  GLE RL         +      Y +RL  EL VI  M F GYFLI
Sbjct: 284  GDLKIEDFLVKVSEEGLEERLEFLFPDPEERAAKRPAYDERLKIELEVINNMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +    YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KLI
Sbjct: 404  VDFCMDRRDEVIEHTAELYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPFGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + +E    D  V  L++I++KLEG  R+A  HA G+VI    +
Sbjct: 464  PGDPGMTL-AKAFEVEPQLQEVYDGDEEVRTLIDIARKLEGTTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-----LAQRGV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++Q +LD       A+   
Sbjct: 523  TDFAPLYCDDEGKHPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWALDMLNPALEAKGKA 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  ++ LL    T  +FQLES GM++ +  ++PDC ED+IALV+L+RPGP
Sbjct: 583  PVRIESIPLDDPRSFELLQRSETTAVFQLESRGMKELISRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDETWQHESLKPILEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT WMKTH+P  F+AA M+ +MDN +K+     +  +  + ++PP VN     
Sbjct: 763  AYALVSYQTLWMKTHFPSYFMAAVMSADMDNTDKVVTLVDECNRMGLPVLPPDVNQGLYK 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y + AIKGVG      I+ A      F  L DFC+RVD KK+NRR +E L
Sbjct: 823  FNVNEKEEIVYGIGAIKGVGEGPVDEILAARERGGKFLDLFDFCNRVDLKKVNRRTIEKL 882

Query: 886  VFAGALDCFG-------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK- 937
            + AGA+D  G         R  L+ +L+   K A    +N     +++F           
Sbjct: 883  ILAGAMDNLGPRLPDGAPHRASLMATLEEAMKSAAQNARNLAQGMDDLFGTLTPEPEQAH 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
             +  K +  +     + E+  LG Y +GHP++ Y   L+K      ++   T RG   R 
Sbjct: 943  HSFVKVAPWSDKEWLDGERETLGLYLTGHPINQYLKELKKFTAGRLKDVSPTGRGKTTRA 1002

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A +V++ +   T++GS++G  T  + +   E   F
Sbjct: 1003 AGLVIASRIMITKRGSKMGIFTLDDKSGRLEVMLF 1037


>gi|239906002|ref|YP_002952741.1| DNA polymerase III alpha subunit [Desulfovibrio magneticus RS-1]
 gi|239795866|dbj|BAH74855.1| DNA polymerase III alpha subunit [Desulfovibrio magneticus RS-1]
          Length = 1154

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1037 (39%), Positives = 594/1037 (57%), Gaps = 29/1037 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL  H+ YSLL+GA+ + +++    +   PA AITD  NL  AL F   A  A ++
Sbjct: 2    PDFVHLHCHTEYSLLDGAIRIGDLVKTAKSFNSPAAAITDHGNLHGALIFYDAAKKAELK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC++ +          +          +VLL     GY+ L++L +  +  +     
Sbjct: 62   PIIGCEVYVSPTSRRDRDPRTPR-----YHLVLLAQNMTGYKNLLKLATLGHT-EGMYYK 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L + G EGLI L+    G I++         A      +  LF DR Y+ +Q 
Sbjct: 116  PRVDKELLGQYG-EGLIALSACIKGEINQKLLKEGKDQARAMAKEYASLFPDRFYLEIQA 174

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++      ++ L+    LPLVATN+  +L  +D EAHDVL+ +  +  V    R R
Sbjct: 175  NEIPEQAIINDFLIDLSDDMGLPLVATNDCHYLRADDAEAHDVLLCIQTAACVDDVKRMR 234

Query: 248  VTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             T          EM + F+ +P+A+ N+ EIA R +  L+      P +       + + 
Sbjct: 235  FTTQDLYYRSPDEMAAAFAHVPQAIANSCEIAERINLQLKFGDYHFPVYKSPPGKSLDEV 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              +  R      L          +G   + Y  RL+ EL+VI +M F GYFLIV DFI W
Sbjct: 295  MADLARKGLTERLSKM-------QGADPKRYWDRLELELDVIKQMGFPGYFLIVQDFINW 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + IPVGPGRGS AGS+ AYAL IT++DPL + LLFERFLN +R+SMPD D+DFC+ R
Sbjct: 348  AKNHGIPVGPGRGSAAGSLVAYALRITNLDPLPYDLLFERFLNIERVSMPDIDVDFCERR 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVIRYV   YG E VAQI TFG+++AKA +RDVGRAL M + + DR+ KLIP D    
Sbjct: 408  RHEVIRYVTEHYGEEAVAQITTFGTMKAKAVVRDVGRALGMSFGETDRIAKLIPEDLKMT 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+A +   +     D  V +L+++S++LEGL RHASTHAAG+V+ D  +++ VP+Y
Sbjct: 468  ID-KALAQEPELKTLMAQDGRVAKLIDVSRRLEGLARHASTHAAGVVVSDTAMTEYVPLY 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            +  +++  VTQ++MK +EKAGL+KFDFLGLKT+T++  +L  + +      DL  +PF D
Sbjct: 527  KG-KNNETVTQWDMKRVEKAGLVKFDFLGLKTMTVIDDTLQIIREMGEEPPDLDTLPFTD 585

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
              TY L     T GIFQ+ES GMR+ L  ++P+C EDIIA+++LYRPGP+ + +V  +  
Sbjct: 586  EATYELFAKGDTDGIFQVESQGMRKYLRMLKPNCFEDIIAMLALYRPGPLGSGMVELFIR 645

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G++ +   HPL++  LK T GVI+YQEQVM+IAQ+L+ +SL   D+LRRAMGKK  E
Sbjct: 646  RKHGEDPVEYPHPLLEETLKPTYGVIVYQEQVMKIAQVLANFSLGAGDLLRRAMGKKNAE 705

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM KQ+  F+ G ++N I +  A  IF+L+ KFA+YGFNKSH+AAYA+ISY TA++K HY
Sbjct: 706  EMGKQRGFFVEGCAQNDIPEKKANEIFDLMEKFAEYGFNKSHSAAYALISYHTAYLKAHY 765

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PV F+AA MT +M+N +K+ ++    R  ++ ++PP VN     F V DN+I Y LAA+K
Sbjct: 766  PVAFMAALMTSDMENQDKLLQYIAACRDNDLTLLPPDVNAGYPHFSVKDNKILYGLAAVK 825

Query: 844  GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      I+ A  +  PF SL DF SRV+ +K+ +RV+E L+  GA D FG +R  L 
Sbjct: 826  NVGRDAVAEIVAAREEGGPFTSLLDFTSRVNMRKITKRVIEYLIKCGACDSFGCTRAGLA 885

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL------EKFSVENSSVRFENEQ 956
              LD      Q     + +   ++           + L       +    +       E+
Sbjct: 886  AGLDQAAAIGQRRAAEKNDGRLSLMTLMPEKPKPTVGLGLSCAEAELPEWHHEEMMAFEK 945

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              LGFY + HPL  Y+  LR M +    +      G  ++LA + VS ++  T+KG ++ 
Sbjct: 946  EALGFYLTSHPLLAYERDLRAMRLTTIAQCDGMEPGVEVKLACICVSTKEIITKKGQKMA 1005

Query: 1017 WVTFSE-PAKEYEANFF 1032
            +    +    E EA  F
Sbjct: 1006 FCKLEDHLGGEAEAVVF 1022


>gi|291525519|emb|CBK91106.1| DNA polymerase III catalytic subunit, DnaE type [Eubacterium rectale
            DSM 17629]
          Length = 1166

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1048 (33%), Positives = 554/1048 (52%), Gaps = 33/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL  H+ YSLL+G+  +   + ++      + AITD  N++  +EF + A A  I P
Sbjct: 2    SFCHLHTHTEYSLLDGSNKIKEYVKRVKELGMNSAAITDHGNMYGVVEFYKTAKANDINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC++ +                     ++LL     GY  L+++VS  +  +      
Sbjct: 62   VIGCEVYVAPNSRFDRETSHG--DDRYYHLILLAENNTGYANLMKIVSIGFT-EGYYYRP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L+    EGLI L+   +G I R         A++    ++  FG D  ++ LQ 
Sbjct: 119  RVDFETLERYH-EGLICLSACLAGEIPRYIVRGFYDEAKEIARKYQDCFGKDNFFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+     Q+++++   E+ LV TN+  +  E D EAHDVL+ +     VS +DR R
Sbjct: 178  HGIDDQKLVNQQLLRMSKELEIGLVCTNDVHYTYESDAEAHDVLLCIQTGKKVSDEDRMR 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  ++K+  +M ++F    EA+ENT +IA RC+  L+     +P++   E  D    
Sbjct: 238  YDGGQFFVKSEEQMRALFPYATEAIENTQKIADRCNVTLEFGNYKIPKYEVPEGYD---S 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E  L      G   +            +     +D+EL +I  M F  Y LIV D+I W
Sbjct: 295  AEAFLTELCEKGFREKYIGCGEYSDEELKKIHADMDYELGIIKTMGFIEYILIVWDYINW 354

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             + ++  VGPGRGS AGS   Y   ITDIDP++++LLFERFLNP+R+SMPD D+DF    
Sbjct: 355  CRTHDCWVGPGRGSAAGSRVCYCTGITDIDPVKYNLLFERFLNPERVSMPDIDVDFEYAE 414

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R   I YVQ KYGH+ V QI+TFG++ A+  ++ VG+AL  PY++ DRL K++P +    
Sbjct: 415  RYRAIEYVQQKYGHDSVTQIVTFGTMAARGVIKSVGKALDFPYAETDRLAKMVPQELNIT 474

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +  F+    +D  V  +++++++LEGL  H S HAAG+VI     S  VP+ 
Sbjct: 475  ID-KALQMNPEFKGIYDSDARVHEMIDMAKRLEGLPNHTSVHAAGVVIYPGVASDYVPLG 533

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            R      P  ++NM  +E+ GL+K DFLGL+TLT+L+ S+  +   RG+ VD+  I F+D
Sbjct: 534  RA-NDGSPTAEYNMVQLEELGLLKMDFLGLRTLTVLKDSVKNIKASRGIDVDIDHIDFND 592

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T   + T  T G+FQLES+GM+  ++ + P   EDI+A +SLYRPGP+D I  Y   K
Sbjct: 593  KGTLDFIGTGKTEGVFQLESAGMQSFMKELSPQSFEDIVAGISLYRPGPMDFIPNYIKGK 652

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  ++I  + P ++ +L+ T G I+YQEQVMQI Q L+GY++ +AD +RRAM KK +  +
Sbjct: 653  NNPKEISYVTPELESILEPTYGCIVYQEQVMQIVQKLAGYTMGQADNIRRAMSKKKQYVI 712

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            D +++ F+         G   NGI +  A +I++ +  FA Y FNKSHAAAYA IS QTA
Sbjct: 713  DAERQSFVYGDKERGIKGCVANGIDEKAANSIYDSMVDFAKYAFNKSHAAAYAKISVQTA 772

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+K +YPVEF+AA MT  +DN  K  ++    R   I+++PP +N    +F    + + Y
Sbjct: 773  WLKNYYPVEFMAALMTSVIDNSAKAAQYLYSCRDMGIKVLPPDINCGQGEFTAEGDHVRY 832

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKL-NRRVLESLVFAGALDCFG 895
             + AIK +G      I+E       + +L DF  R   K+L N+R +E+L+ AGA D   
Sbjct: 833  GMYAIKSLGRPVIDQIIEERESGGRYRTLSDFIERTCQKELINKRAIENLIKAGACDSLD 892

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFE 953
             +R Q+     +I    Q  +K+      ++F    ++   S ++        ++     
Sbjct: 893  GTRKQMAMVYASIVDRVQHDKKSTMAGQMSLFDLVSDEDRQSFELKYPNVGEYDAEEALA 952

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQ 1005
             E+ VLG Y SGHPL+ Y   L+K       +         V      ++ +  M+ +K 
Sbjct: 953  YEKEVLGIYLSGHPLEKYAAALKKNITANAIDFVLEEESGAVKIEDNAHVVIGGMIATKT 1012

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K T+    + ++T  +     E   FP
Sbjct: 1013 IKFTKYNQAMAFITIEDLTGTVEVIIFP 1040


>gi|91223488|ref|ZP_01258753.1| DNA polymerase III subunit alpha [Vibrio alginolyticus 12G01]
 gi|91191574|gb|EAS77838.1| DNA polymerase III subunit alpha [Vibrio alginolyticus 12G01]
          Length = 1159

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1048 (40%), Positives = 611/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VHS +S+++G   +  I+ K+A    PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFIHLRVHSDFSMVDGLNKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG    +          Q       +  + LL +   GY+ L  L+S+ YL   
Sbjct: 60   SGVKPIIGADFKM----------QSDEFGEELTQVTLLAADNVGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  +WL E+ +EGLI+L+GG SG I R     + Q+ +  +  +K+ F DR Y+
Sbjct: 110  VQHHPVIDKAWLAEM-SEGLIVLSGGKSGEIGRGLLKGNRQLVQGCVDFYKQHFPDRFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA   +LP+VATN  +FLS + ++AH++ +A+     +   
Sbjct: 169  ELLRTGRPDEETYLHFAVELAEQQDLPVVATNEVVFLSPDLFDAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL+   EM  +F+D+PEALEN+VEIA+RC+  +++               
Sbjct: 229  RRPKNYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               +E   L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 284  EGMKETEFLVMKSREGLEERLEFLFPDEEERKRRRPEYDERLQIELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KLI
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +       +    E   AD  V  L+++   LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLDKA-FKAEPALPELYEADEEVKELIDMCHILEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP +D  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVQIESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +   L  T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRAIFEEGAIKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  + ++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYR 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  +  I Y + AIKGVG      I+EA      F  L DFC+RVD K++N+RV+E L
Sbjct: 823  FNVDENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARVDLKRVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            ++AGALD  G  R  ++ SL++  K A    +       ++F        + +    +  
Sbjct: 883  IYAGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ 
Sbjct: 943  PWPEKVWLEGERDTLGLYLTGHPINAYVKELNKYTSCRLKDATPTRRDQSVTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|148981148|ref|ZP_01816310.1| DNA polymerase III subunit alpha [Vibrionales bacterium SWAT-3]
 gi|145960975|gb|EDK26300.1| DNA polymerase III subunit alpha [Vibrionales bacterium SWAT-3]
          Length = 1159

 Score =  785 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1048 (39%), Positives = 606/1048 (57%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFVHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPALALTDFTNLCGLVKFYGTAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG               Q       +  + +L S  +GY  L  L+S+ YL   
Sbjct: 60   CGVKPIIGADF----------LMQSPEFGDELTKLTVLASDNKGYNNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I   WL E   EGLI+L+G   G I +A    +  +    +  +K  F DR Y+
Sbjct: 110  IQHQPVIDKEWLIE-NAEGLIILSGAKEGEIGKALLKGNRDLVASSVEFYKTHFPDRFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        ++LA   +LP+VATN  +FL+E+ ++AH++ +A+     +   
Sbjct: 169  ELIRTGRADEESYLHFALELAEQQDLPVVATNEVVFLTEDLFDAHEIRVAIHDGYTMVDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   YL++  EM  +FSD+PEALEN+VEIA+RC+  +++       +       
Sbjct: 229  RRPKNYSAQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGE-----YFLPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA        +     +Y +RL  EL V+  M F GYFLI
Sbjct: 284  EGLAIEDFLIKKSEEGLERRLAFLFPDEKERAERRPEYDERLKVELEVVNNMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 404  IDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +    +A +    E    D  V  L++  + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLEKAFLA-EPALPELYDGDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYADAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKEGKE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  +++LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVRIESIPLDDQASFNLLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E +        H  +   L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAVSYPDETWQHESLKDTLEPTYGIILYQEQVMQIAQILAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRGTFKEGAEANGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVIGLVDECFRMKLKLLPPDINSGLYR 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVDDDGAIVYGIGAIKGVGEGPIEAIIEARNKGGYFKDLFDFCARIDLKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GALD  G  R  ++ SL +  K A       +    ++F        + +    +  
Sbjct: 883  ILSGALDRLGPHRAAMMASLADAVKAASQYHHAESFGQSDMFGVLTDAPEEVEHKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +  V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ 
Sbjct: 943  RWSEKVWLEGERETLGLYLTGHPVNAYIKELAKYTSCRLKDATPTRRDQSLTIAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGLMTIDDRSGRMEVMLF 1030


>gi|269966266|ref|ZP_06180355.1| DNA polymerase III subunit alpha [Vibrio alginolyticus 40B]
 gi|269829181|gb|EEZ83426.1| DNA polymerase III subunit alpha [Vibrio alginolyticus 40B]
          Length = 1159

 Score =  785 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1048 (40%), Positives = 611/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VHS +S+++G   +  I+ K+A    PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFIHLRVHSDFSMVDGLNKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG    +          Q       +  + LL +   GY+ L  L+S+ YL   
Sbjct: 60   SGVKPIIGADFKM----------QSDEFGEELTQVTLLAADNVGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  +WL E+ +EGLI+L+GG SG I R     + Q+ +  +  +K+ F DR Y+
Sbjct: 110  VQHHPVIDKAWLAEM-SEGLIVLSGGKSGEIGRGLLKGNRQIVQGCVDFYKQHFPDRFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA   +LP+VATN  +FLS + ++AH++ +A+     +   
Sbjct: 169  ELLRTGRPDEETYLHFAVELAEQQDLPVVATNEVVFLSPDLFDAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL+   EM  +F+D+PEALEN+VEIA+RC+  +++               
Sbjct: 229  RRPKNYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               +E   L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 284  EGMKETEFLVMKSREGLEERLEFLFPDEEERKRRRPEYDERLQIELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KLI
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +       +    E   AD  V  L+++   LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLDKA-FKAEPALPELYEADEEVKELIDMCHILEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP +D  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVQIESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +   L  T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRAIFEEGAIKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  + ++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYR 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  +  I Y + AIKGVG      I+EA      F  L DFC+RVD K++N+RV+E L
Sbjct: 823  FNVDENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARVDLKRVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            ++AGALD  G  R  ++ SL++  K A    +       ++F        + +    +  
Sbjct: 883  IYAGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ 
Sbjct: 943  PWPEKVWLEGERDTLGLYLTGHPINAYVKELNKYTSCRLKDATPTRRDQSVTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|254228403|ref|ZP_04921829.1| DNA polymerase III, alpha subunit subfamily, putative [Vibrio sp.
            Ex25]
 gi|262393535|ref|YP_003285389.1| DNA polymerase III subunit alpha [Vibrio sp. Ex25]
 gi|151938991|gb|EDN57823.1| DNA polymerase III, alpha subunit subfamily, putative [Vibrio sp.
            Ex25]
 gi|262337129|gb|ACY50924.1| DNA polymerase III alpha subunit [Vibrio sp. Ex25]
          Length = 1159

 Score =  785 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1048 (40%), Positives = 611/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VHS +S+++G   +  I+ K+A    PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFIHLRVHSDFSMVDGLNKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG    +          Q       +  + LL +   GY+ L  L+S+ YL   
Sbjct: 60   SGVKPIIGADFKM----------QSDEFGEELTQVTLLAADNVGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  +WL E+ +EGLI+L+GG SG I R     + Q+ +  +  +K+ F DR Y+
Sbjct: 110  VQHHPVIDKAWLAEM-SEGLIVLSGGKSGEIGRGLLKGNRQIVQGCVDFYKQHFPDRFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA   +LP+VATN  +FLS + ++AH++ +A+     +   
Sbjct: 169  ELLRTGRPDEETYLHFAVELAEQQDLPVVATNEVVFLSPDLFDAHEIRVAIHDGYTLEDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL+   EM  +F+D+PEALEN+VEIA+RC+  +++               
Sbjct: 229  RRPKNYSPQQYLRTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               +E   L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 284  EGMKETEFLVMKSREGLEERLEFLFPDEEERKRRRPEYDERLQIELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KLI
Sbjct: 404  VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +       +    E   AD  V  L+++   LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLDKA-FKAEPALPELYEADEEVKELIDMCHILEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYADAEGHFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP +D  ++ LL    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVQIESIPLEDPASFRLLQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E I        H  +   L  T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDEKWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRAIFEEGAIKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  + ++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYR 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  +  I Y + AIKGVG      I+EA      F  L DFC+RVD K++N+RV+E L
Sbjct: 823  FNVDENGAIVYGIGAIKGVGEGPIDAILEARNKGGHFKDLFDFCARVDLKRVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            ++AGALD  G  R  ++ SL++  K A    +       ++F        + +    +  
Sbjct: 883  IYAGALDRLGPHRAAMMASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ 
Sbjct: 943  PWPEKVWLEGERDTLGLYLTGHPINAYVKELNKYTSCRLKDATPTRRDQSVTVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGIMTLDDRSGRMEVMLF 1030


>gi|270308619|ref|YP_003330677.1| DNA polymerase III, alpha subunit [Dehalococcoides sp. VS]
 gi|270154511|gb|ACZ62349.1| DNA polymerase III, alpha subunit [Dehalococcoides sp. VS]
          Length = 1170

 Score =  785 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1038 (36%), Positives = 575/1038 (55%), Gaps = 37/1038 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ +SLL+G   ++ ++ +       A+AITD   +     F ++A  AGI+P+
Sbjct: 2    FCHLHVHTEFSLLDGMCRISQLVARAKELGMEALAITDHGTMHGIPRFYKEAKEAGIKPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +  +   D    T   K        +VLL    +GY  LI+L SR ++ +      R
Sbjct: 62   LGSEFYLAYGDRTAKTAADK----NYYHLVLLAKNNKGYHNLIQLSSRSHI-EGFYYKPR 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L++  +EGL+ L+   SG + R    N    A +  L +KK F +  Y+ +QRH 
Sbjct: 117  IDKELLEKY-SEGLVCLSACPSGEVPRLILENRFNEAREAALWYKKTF-ENYYIEIQRHP 174

Query: 191  GYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     S ++ +A   ++PLVATN++ +L +ED   HD+L+ +  + +VS + R ++ 
Sbjct: 175  MPDLEKINSVLIPMARELDIPLVATNDTHYLDKEDAPYHDLLLCIGTNALVSDEKRMKME 234

Query: 250  PDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D++  K+  EM   + D+P+A+ENTV+IA  C+  L      LP           K  +
Sbjct: 235  GDYFYLKSPEEMAEAYQDIPDAIENTVKIAEMCNVSLDFGRLHLPEIDIP----ADKTPD 290

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L +    GL              +Q+   RL +EL+VI   +F+ YFL+  D I++ K
Sbjct: 291  EYLADLCYGGLPKFYPD-------ASQEILDRLKYELDVIKTTEFANYFLVTWDIIRFVK 343

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  +  G  RGS A S+  Y L IT +DP+++ L+FERFLN +R  MPD D+DF  DRR+
Sbjct: 344  EKGLYYG-VRGSAASSIVLYCLGITALDPIKYKLVFERFLNIERKEMPDIDMDFQDDRRE 402

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV  KYG + V+QIITFG+L AKAA+RD GRAL M Y+ VDR+ K+IP      + 
Sbjct: 403  EVIEYVVGKYGRDHVSQIITFGTLGAKAAVRDAGRALGMAYADVDRVAKVIPFSLHMTLD 462

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+ + +  ++    D  V  L++ ++K+EGL RHASTHAAG+VI   PL+  VP+ R 
Sbjct: 463  -KAMEESTELKDMFNQDSVVRNLVDAARKIEGLSRHASTHAAGVVISKDPLTDHVPLQRL 521

Query: 549  VRSDLP---VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
             + +     +TQ+ M+ I K GL+K DFLGL  L +L K+   + +     +D   IP D
Sbjct: 522  SKENNLGLVMTQYTMEDIAKIGLLKMDFLGLVNLNILGKACAVIKEYTGQDIDPLAIPLD 581

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T+G+FQLE +GMR+ ++ ++P    DI A+V+LYRPGP++ I  +   
Sbjct: 582  DAKTFELLAAGETVGVFQLEGTGMRRYIKELKPTVFSDIGAMVALYRPGPMEQIPRFIKS 641

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G E I   HP + P+L+ET GVI+YQEQV+ IAQ  SGY+L +AD+LR+AMGKKI   
Sbjct: 642  KHGLEPITYPHPALAPILEETYGVIVYQEQVLFIAQTFSGYTLGQADILRKAMGKKIAAV 701

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQK  FI GA KNG +  IA  +F L+  FA Y FNK+HA +YA+I+YQTA++K +YP
Sbjct: 702  MQKQKANFIDGALKNGYTPEIAEEVFALVEPFAGYAFNKAHATSYALIAYQTAYLKANYP 761

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYYSL 839
            VE++ A +    D  EK+     +AR   I+++PP +N   V+F++  N     +I + L
Sbjct: 762  VEYITAYLQAFCDVTEKVVTAVTEARHMGIEVLPPDINRSGVNFEIEQNEDGVKKIRFGL 821

Query: 840  AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            AA+K VG      I+     +  + S+ED C R +   LN+RV+ESLV AGALD  G  R
Sbjct: 822  AAVKNVGVAAVEPIVAERKANGDYLSVEDLCRRAEGSSLNKRVMESLVKAGALDSLG-DR 880

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKH---ENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              LL +L NI   AQ  +K + +      ++F  +       + + +  V  +  + + E
Sbjct: 881  GTLLFNLPNILSLAQREQKLKDSNQTTMFDLFGQQSPMPMPSLEMAESPV-TTREKLQWE 939

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            + ++G + S HP   Y    +++      +    +    + +A MV S +   TR+G   
Sbjct: 940  KELVGIFISEHPFTPYASSAQEVTTALCGQIDEELHNQPVTVAGMVASVRVSATREGKPF 999

Query: 1016 GWVTFSEPAKEYEANFFP 1033
                  +     E   +P
Sbjct: 1000 VMAEIEDLVGRVEVAAWP 1017


>gi|310658953|ref|YP_003936674.1| DNA polymerase III dnae [Clostridium sticklandii DSM 519]
 gi|308825731|emb|CBH21769.1| DNA polymerase III DnaE [Clostridium sticklandii]
          Length = 1150

 Score =  785 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1055 (35%), Positives = 601/1055 (56%), Gaps = 49/1055 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++K   FVHL +H+ YSLL+G   ++ ++ +       A+AITD   +F  ++F +KA A
Sbjct: 1    MDKK--FVHLHLHTQYSLLDGFAKIDKLIQRAKDYSMDAVAITDHGVMFGVIDFYKKAKA 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIGC++    +         K        ++LL    +GY+ L++LVS  + ++ 
Sbjct: 59   NGIKPIIGCEVYTASRTYKDKEGIDKKSG----HLILLAENEKGYRNLVKLVSMGF-VEG 113

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLY 183
                 RI    L+E  +EGLI L+   +G I +       + A++  L  + +FG+   +
Sbjct: 114  FYYKPRIDYKILKE-HSEGLIGLSACLAGEIQQKLMNGQYKEAKEIALMLRDIFGENNFF 172

Query: 184  VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ H   ++      + +L+    +PLVATN+  ++ ++D + HD+L+ +     ++ 
Sbjct: 173  LELQDHGIREQKKVNIFLRKLSQDTGIPLVATNDVHYVDKDDAKTHDILLCIQTGKTLAD 232

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            + +    T + Y K++SEM  +F D  +AL NT EIA RC+     +   LP +   E  
Sbjct: 233  EHKMEFETDEFYFKSQSEMYELFPDDAQALRNTWEIANRCNVDFDFNTIHLPEYSVPE-- 290

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               K     LR     GL                  ++RLDFELNVI  M +  YFLIV 
Sbjct: 291  --NKAPSEYLRQLCQDGL-------VDRYKTIDSKLQERLDFELNVIENMGYVEYFLIVW 341

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI ++K++NI VGPGRGS AGS+ AY L ITDIDP+++ LLFERFLNP+R+SMPD DID
Sbjct: 342  DFIDFSKRSNIMVGPGRGSAAGSIVAYTLGITDIDPIKYGLLFERFLNPERVSMPDIDID 401

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++R++VI YV+ KYG + V+QIITFG+L A++++RDVGR + + YS VD++ K IP 
Sbjct: 402  FCYEKREKVIDYVREKYGSDHVSQIITFGTLGARSSIRDVGRVMGISYSDVDKVAKEIPF 461

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +  +A+  +   R+    D     L+++++ +EGL RHASTHAAG+VI   P+  
Sbjct: 462  ALNMTIE-KALDLNPNLRKIYNEDEKARELIDVAKNVEGLPRHASTHAAGVVISKEPVDH 520

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
             VP+Y   + +   TQF M  +E+ GL+K DFLGL+TLT++QK++D + + R + +D S 
Sbjct: 521  YVPLYT--QDNAVTTQFPMTTLEELGLLKMDFLGLRTLTVIQKAIDIILRTRNITIDFSN 578

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
              +DD   Y LL++  TLG+FQLESSGMRQ ++ ++P+  EDI+A +SLYRPGP+D+I +
Sbjct: 579  SDYDDKAVYELLSSGDTLGVFQLESSGMRQFMKELKPETFEDIVAGISLYRPGPMDSIPL 638

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y   KN  + +V  H  I P+L+ T+G+++YQEQVMQ+ + L+GYS   +D++RRAM KK
Sbjct: 639  YIKNKNNPDSVVYDHESIRPILEVTRGILVYQEQVMQVVRDLAGYSYGRSDLVRRAMSKK 698

Query: 721  IKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
              + M++++  F+             G  +NGI + IA  IF+ +  FA+Y FNKSHAAA
Sbjct: 699  KMDVMEEERRNFVYGKEDENGNIEINGCVRNGIPEKIANKIFDDMIDFANYAFNKSHAAA 758

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YAV++Y+TA++K +YPVEF+AA MT  M N +K+ ++ ++  +  I+++ P VN    +F
Sbjct: 759  YAVLAYETAYLKAYYPVEFMAAIMTSVMGNTDKVVEYIRECERLKIEVLKPDVNKSFTEF 818

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V +N I YSL A+K VG     +++    +   +   +DF  R+D K +N+R +ESL+ 
Sbjct: 819  AVENNHIRYSLCAVKNVGVHFVENLVAEREEKGIYIDFDDFAKRLDKKDINKRTIESLIK 878

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
             GA D    +R  ++   + I        KN      ++F  +      K  + + S  N
Sbjct: 879  CGAFDELIPNRASIMAGYEKILSSISNSRKNNIEGQVSLFDTQLQN-EVKAKIIELSEFN 937

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT---------IRGNNIRLA 998
               + + E+ VLG Y SGHPL+ YK +L ++                        ++++ 
Sbjct: 938  DKEKLQMEKEVLGLYLSGHPLNEYKDMLSRITTTTTLTLREMKDNYIENQFKDNMSVKIG 997

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++  K  K T+    + ++T  +     E   FP
Sbjct: 998  GVINKKSIKSTKNKDMMAFLTLEDIYGTVEIIVFP 1032


>gi|260596604|ref|YP_003209175.1| DNA polymerase III subunit alpha [Cronobacter turicensis z3032]
 gi|260215781|emb|CBA28207.1| DNA polymerase III subunit alpha [Cronobacter turicensis z3032]
          Length = 1160

 Score =  785 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/1049 (40%), Positives = 606/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA AITD  NL   ++F   A  
Sbjct: 1    MAE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPAFAITDFTNLCGLVKFYGGAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG   ++          Q          I +L +   GYQ L  L+SR Y    
Sbjct: 60   VGMKPIIGADFNM----------QCDLLGEDFSHITVLAANNTGYQNLTLLISRAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+G EGLI+L+GG  G + +     ++ +AE+ L  +++ F DR Y+
Sbjct: 110  GAAGPWIDQQWLAELG-EGLILLSGGRQGDVGKCLLRGNNVMAEQALAFYQEHFPDRYYL 168

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R     V LA    +P+VATN+  F+   D++AH++ +A+     +   
Sbjct: 169  ELVRTGRPDEERYLHAAVALAEEKGVPVVATNDVRFIEPGDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  YL+   EM  +FSDLPEALEN+VEIARRC+  +++       +   +   
Sbjct: 229  KRPRHYSPQQYLRTEEEMCELFSDLPEALENSVEIARRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL           Q    Y +RL+ EL VI +M F GYFLI
Sbjct: 284  GDMTTEDFLVMKSKEGLEERLEFLFPDPEERVQKRPPYDERLEIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + +E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLQEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +LD +  R  K  L 
Sbjct: 523  TDFAPLYCDEMGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALDMINARRAKQGLE 582

Query: 600  L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                  IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSIFEDGAKNNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA   D  F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKDGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A ++++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTERGKVTTAAGLIIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|238754792|ref|ZP_04616143.1| DNA polymerase III subunit alpha [Yersinia ruckeri ATCC 29473]
 gi|238706952|gb|EEP99318.1| DNA polymerase III subunit alpha [Yersinia ruckeri ATCC 29473]
          Length = 1173

 Score =  785 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1049 (39%), Positives = 596/1049 (56%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G   +  ++ + AA   PA+A+TD  NL   ++F   A  
Sbjct: 14   MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAVTDFTNLCGLVKFYGSAHG 72

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q       +  + +L    +GYQ L  L+S  Y    
Sbjct: 73   AGIKPIIGADFCV----------QSDMLGDELAQLTVLAKNNQGYQNLTLLISEAYQRGY 122

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL +   EGLI+L+GG  G + +     +    ++ L  +++ F D  Y+
Sbjct: 123  GPAGPTIDRDWLIK-HREGLILLSGGRMGDVGKFLVRGNQSQVDQCLDFYQEYFPDSYYL 181

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  F+ E D++AH++ +A+     +   
Sbjct: 182  ELIRTGRPDEENYLHAAVALATARSLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 241

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 242  KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 296

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLI
Sbjct: 297  GDMSTEDFLVEKSRQGLEERLEFLFPDPEVRAQKRPEYDERLDIELKVINQMGFPGYFLI 356

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 357  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 416

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 417  VDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 476

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 477  PPEPGMTLE-KAFEAEPQLAEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 535

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R       
Sbjct: 536  TDFAPLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 595

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 596  PIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 655

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL
Sbjct: 656  LQSGMVDNFIDRKHGREALSYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 715

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 716  GGADMLRRAMGKKNPAEMAKQRSVFEDGAKSQGIDGELAIKIFDLVEKFAGYGFNKSHSA 775

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 776  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 835

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+LE L
Sbjct: 836  FHVNDEGEIVYGIGAIKGVGEGPIEAMLEARNEGGYFKDLFDLCARVDTKKLNRRILEKL 895

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            V +GA D  G  R  L+ SL    K A    K       ++F          + +     
Sbjct: 896  VMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQADMFGVLADAPEQVEQSYANVP 955

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +V +
Sbjct: 956  HWQEQVVLDGERETLGLYLTGHPITQYLKEIERYTGGLRLKDMHPTDRGKMTTAVGLVTA 1015

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1016 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1044


>gi|291539914|emb|CBL13025.1| DNA polymerase III catalytic subunit, DnaE type [Roseburia
            intestinalis XB6B4]
          Length = 1156

 Score =  785 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1047 (34%), Positives = 577/1047 (55%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F + A AAGI+P
Sbjct: 2    SFTHLHVHTEYSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYKAARAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +                     +VLL    +GYQ L+++VS+ + ++      
Sbjct: 62   ILGCEVYVAPGSRFDRELSHG--DDRYYHLVLLAENNKGYQNLMKIVSKGF-VEGYYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+ +  L+    EG+I L+   +G + R       + A++    ++K FG    ++ LQ 
Sbjct: 119  RVDMEVLETYH-EGIIALSACLAGEVQRYLVRGLYEEAKETAYKYEKCFGKGNFFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++    + +++++    + LVATN+  +   ED E HD+L+ +     +S ++R R
Sbjct: 178  HGIPEQKTVNAGLMRMSQETGIELVATNDVHYTYAEDAEPHDILLCLQTGKKLSDENRMR 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +++K+  EM ++F    +A++NT +IA RC+  ++     LP F   E  D    
Sbjct: 238  YEGGQYFVKSEEEMRALFPYAAQAIDNTQKIADRCNVEIEFGVTKLPHFDVPEGYD---- 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GL  R            ++   +LD+EL+VI +M +  YFLIV DFI +
Sbjct: 294  SWTYLNKLCHEGLVRRYPD-------KHEELLPKLDYELSVIQKMGYVDYFLIVWDFINY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ + IPVGPGRGS AGS+ +Y   IT+IDP+R++LLFERFLNP+R++MPD DIDFC +R
Sbjct: 347  ARTHGIPVGPGRGSAAGSLVSYTTGITNIDPIRYNLLFERFLNPERVTMPDIDIDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG + V QI+TFG+L A+  +RDVGR + +PY+  D + K IPN+    
Sbjct: 407  RSEVIDYVIEKYGKDCVTQIVTFGTLAARGVIRDVGRVMDLPYNFCDTIAKNIPNELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +    I  +   R    +D +V RL++++++LEGL RH S HAAG+VI  + + + VP+ 
Sbjct: 467  IDKALI-MNPELRSMYESDETVKRLIDMAKRLEGLPRHTSMHAAGVVISQKAMDEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDD 605
            R        TQF M  IE+ GL+K DFLGL+TLT++  ++       G+K+D+  I ++D
Sbjct: 526  RSS-DGTITTQFVMTTIEELGLLKMDFLGLRTLTVISDAVKLVEKNHGIKIDVDNIDYND 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +    + T    G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y   K
Sbjct: 585  KKVLDSIGTGRCDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPKYIKGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E +  +   ++P+L+ T G I+YQEQVMQI Q L+GY++ +AD +RRAM KK +  +
Sbjct: 645  NEPESVTYVCKELEPILEPTYGCIVYQEQVMQIVQNLAGYTMGQADNIRRAMSKKKQYVI 704

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            D +++ F+         G   NGIS+  A  I++ +  FA Y FNKSHAAAYAV++YQTA
Sbjct: 705  DAERQNFVYGNEEQGIKGCIANGISEQAANQIYDSMVDFAKYAFNKSHAAAYAVVAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YPVEF+AA MT  +DN  K+ ++    RQ  I+++ P +N     F    + I Y
Sbjct: 765  YLKYYYPVEFMAALMTSVIDNTRKVAEYIYSCRQMGIKVLSPDINEGEGRFLATKDGIRY 824

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             + AIK +G      I+    A+  + +L DF SRV  +++N+R +E+L+ AGA D    
Sbjct: 825  GMYAIKSIGRQVIDIILAEREANGKYTTLSDFLSRVAGREVNKRAVENLIKAGACDGLDG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q+L   + +       +KN      ++F    E+   + ++           ++   
Sbjct: 885  NRQQMLLVYNTLIDNLNQEKKNSLAGQMSLFDLVSEEEKKAYEVRFPNVEEYTKEIKLGF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPL+ Y+   RK       + +              ++ +  ++  K  
Sbjct: 945  EKEVLGIYLSGHPLEEYEEKWRKNISAVTADFMLDEETNAVKIKDNQSVVIGGIITEKTI 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T++   + ++T  +     E   FP
Sbjct: 1005 KYTKQNKAMAFITVEDLFGTVEVIIFP 1031


>gi|89075405|ref|ZP_01161822.1| DNA polymerase III subunit alpha [Photobacterium sp. SKA34]
 gi|89048821|gb|EAR54391.1| DNA polymerase III subunit alpha [Photobacterium sp. SKA34]
          Length = 1159

 Score =  785 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/1048 (38%), Positives = 612/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL+VHS YS+++G   +  I+ K +    PA+A+TD  NL   ++F   A  
Sbjct: 1    MAE-PRFIHLRVHSDYSMIDGLAKVKPIVKKASELGMPALAMTDFTNLCGLVKFYFAAHD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q       +  + LL +  EGY+ L  L+S  Y    
Sbjct: 60   AGIKPIIGADFKV----------QSAEMGDELFELTLLAANNEGYKNLTLLISEAYQRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I   WL     EGLI+L+GG +G + +A    + ++ +  +  ++  F D  Y+
Sbjct: 110  VQHQPVIDKEWLVN-HREGLIILSGGKNGDVGKALLKGNQKMVDSLVAFYQTHFPDSYYL 168

Query: 185  NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     +       ++LA   +LP+VATN+   L+ + ++AH++ +A+     +   
Sbjct: 169  ELVRTGRVDEEAYLHFAIELAEKADLPVVATNDVRLLTADQFDAHEIRVAIHDGYTLVDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +RP+  +   YL++  EM  +F+D+PEAL+N+VEIA+RC+  +++       +       
Sbjct: 229  NRPKLYSAQQYLRSEEEMCELFADIPEALQNSVEIAKRCNVTVRLGE-----YFLPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RLD EL V+ ++ F GYFLI
Sbjct: 284  GDMTIEDFLITKSREGLEERLEFLFPDPEVRAARRPEYDERLDIELKVVNQIGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC D+RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  IDFCMDKRDLVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   + +  +A  AD  V  L+++ + LEG+ R+A  HA G+VI    +
Sbjct: 464  PAEPGMTL-AKAFDAEPQLGQAYDADEEVRDLIDMCRILEGVTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPLYCDAEGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALALINPRLVEQGKD 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             ++++ IP DD +++ +L    +  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PINIAAIPMDDQKSFAMLQRSESTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+ +E +        H  +  +L  T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHAREAVSYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  G+ KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRAVFEEGSIKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +KI     +  +  ++++PP VN     
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKIISLVDECHRMKLKLLPPDVNKGLYR 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  + Y + A+KGVG     +I+ A      F  L DFC+R+D+KK+N+RVLE L
Sbjct: 823  FNVDEDGAVVYGIGAVKGVGEGPIENIISAREKGGHFKDLFDFCARIDTKKVNKRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA+D  G +R  +L +LD+  K A    +       ++F        + +       
Sbjct: 883  IKSGAMDRLGPNRAAMLATLDDAIKAASQHHQAEAFGQADMFGVLTAAPEEVENKYANIP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L+       +++  T R     +A +V++ 
Sbjct: 943  EAPDKVWLEGERETLGLYLTGHPINAYISELKHYTTWRLKDAQQTGRDKVATVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|239993623|ref|ZP_04714147.1| DNA polymerase III subunit alpha [Alteromonas macleodii ATCC 27126]
          Length = 1154

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1042 (39%), Positives = 592/1042 (56%), Gaps = 33/1042 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  F+HL+VHS +S+++G   +  IL K+AA   PA+AITD  N+   ++F  +A   GI
Sbjct: 2    SSPFIHLRVHSDFSMMDGLNKVKPILGKVAALGMPAVAITDQMNMCGLVKFYSEAHNLGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIG    +  +                  + L+    EGY+ +  L+S+ YL      
Sbjct: 62   KPIIGTDFWVTNE----------VFGDEPFRLTLIAMNNEGYKNITILISKAYLRGHLSH 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WL E  +EG+I L+G   G +      N++++ +  L  ++  F DR Y+ L 
Sbjct: 112  RAVIDQEWLAE-HSEGVIALSGAQHGDVGVGLMKNNAKILDSALEFYQTHFPDRFYLELI 170

Query: 188  RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R     +       V+LA    LP+VATN   F+  E ++AH++ + +     +    RP
Sbjct: 171  RTGRQGEEDYLHLAVELAEQRGLPVVATNEVCFIDREGFDAHEIRVCIHDGYTLDDNRRP 230

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R +   YL+   EMV +FSD+PEA+ENTVEIA+RC+  ++++      +   +      
Sbjct: 231  KRYSDQQYLRTAEEMVELFSDIPEAIENTVEIAKRCNVTVRLNE-----YFLPQFPTGGM 285

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E+ L   +  GLE RL         +     +Y  RL  EL VI +M F GYFLIV +
Sbjct: 286  TTEDFLVKVSEEGLEERLEFLFPDEEVRKAKRPEYDDRLRIELEVINQMGFPGYFLIVME 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 346  FIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP D
Sbjct: 406  CMDRRDEVIDHVAELYGRQAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPD 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +  +A   + +  E   +D  V  L+++++ LEG+ R+A  HA G+VI    ++  
Sbjct: 466  PGMTLE-KAFKAEPQLPEVYESDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPTTITDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
             P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++Q ++D + + + V VD+S I
Sbjct: 525  SPLYCDDEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMIKEGKNVDVDISAI 584

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
            P +D +++  L    T  +FQLES GM++ ++ ++PDC EDIIALV+L+RPGP+ + +V 
Sbjct: 585  PLEDPKSFRTLQNAETTAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSGMVD 644

Query: 661  ------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
                  +   +         H  +  +L+ T G+I+YQEQVMQIAQ ++GYSL  AD+LR
Sbjct: 645  NFIDRKHGREEISYPDAEYQHECLKEILEPTYGIILYQEQVMQIAQEMAGYSLGGADLLR 704

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ+  F  GA  N I   +A+ IF+L+ KFA YGFNKSH+AAYA++SY
Sbjct: 705  RAMGKKKPEEMAKQRGTFAEGAKGNNIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSY 764

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833
            QT W+K HYP EF+AA M+ +MDN +KI     +  +  I+I+PP +NT    F V  + 
Sbjct: 765  QTLWLKVHYPAEFMAAVMSADMDNTDKIVTLVDECERMGIEILPPDLNTGKYKFTVDSEG 824

Query: 834  RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            RI Y + AIKGVG      I+EA      F  L DFC+++D K++N+RVLE LV AGA+D
Sbjct: 825  RIVYGIGAIKGVGEGPIEAIIEARETQGAFKDLFDFCAKIDIKRVNKRVLEKLVLAGAMD 884

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVR 951
              G  R  L+ SL      A    K  +    ++F        D K            V 
Sbjct: 885  NLGPHRASLMASLPEALAAAGQHAKAESFGQSDMFGLLTTEPEDVKQAFADVPEWPEKVW 944

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
             E E+  LG Y +GHP++ Y   LR        +   T +        +V+  +    ++
Sbjct: 945  LEGEKDTLGLYLTGHPINQYAEELRYYTDGRLVDLKPTNKDQMASAVGLVLGVRVMTNKR 1004

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G R   VT  + +   +  FFP
Sbjct: 1005 GRRWAIVTLDDKSARIDVRFFP 1026


>gi|238751435|ref|ZP_04612927.1| DNA polymerase III subunit alpha [Yersinia rohdei ATCC 43380]
 gi|238710302|gb|EEQ02528.1| DNA polymerase III subunit alpha [Yersinia rohdei ATCC 43380]
          Length = 1171

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1049 (38%), Positives = 604/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  
Sbjct: 12   MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHG 70

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    
Sbjct: 71   AGVKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY 120

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL +   +GLI+L+GG  G + +     +  + ++ L  +++ F D  Y+
Sbjct: 121  GAAGPIIDRDWLIK-HKDGLILLSGGRMGDVGKFILRGNQVLVDQCLEFYQQHFPDSYYL 179

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  F++E D++AH++ +A+     +   
Sbjct: 180  ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIAESDFDAHEIRVAIHDGFTLVDP 239

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 240  KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 294

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L  K+  GLE RL         +      Y +RL+ EL VI +M F GYFLI
Sbjct: 295  GEMSTEDFLVEKSKQGLEERLELLFPDPEIRAQKRPAYDERLEIELKVINQMGFPGYFLI 354

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 355  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 414

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 415  VDFCMEKRDLVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 474

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 475  PPDPGMTLE-KAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKI 533

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R       
Sbjct: 534  TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLE 593

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 594  PIDIASIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 653

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL
Sbjct: 654  LQSGMVDNFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 713

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA   G++  +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 714  GGADMLRRAMGKKNPAEMAKQRSVFEDGAKNQGVNGELAIKIFDLVEKFAGYGFNKSHSA 773

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 774  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 833

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+LE L
Sbjct: 834  FHVNDDGEIVYGIGAIKGVGEGPIEAMLEARKEGGHFKELFDLCARVDTKKLNRRILEKL 893

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+ SL    K A    K       ++F          + +     
Sbjct: 894  IMSGAFDRLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVP 953

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 +  + E+  LG Y +GHP+  Y   + +  G    ++   T RG     A +V++
Sbjct: 954  RWQEQIVLDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIA 1013

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1014 SRVMVTKRGNRIGICTLDDRSGRLEVMLF 1042


>gi|192291642|ref|YP_001992247.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris TIE-1]
 gi|192285391|gb|ACF01772.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris TIE-1]
          Length = 1151

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 530/1036 (51%), Positives = 705/1036 (68%), Gaps = 15/1036 (1%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL VHS+YSLL+G++ +  + +   AD+QPA+A+TDT+N+F  LEFS K   
Sbjct: 1    MSNA-GFVHLHVHSAYSLLKGSMKIAKLAELAKADRQPALALTDTDNMFGGLEFSDKLSG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GIQPI+G +L ID  D    +  G    P    IVLL +  +GY+ L+ L SR +L   
Sbjct: 60   YGIQPIVGLELGIDFGDQDPNSRHGALATPA--RIVLLAAREQGYRSLMRLNSRAFLETP 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              Q   + L WL E  T+G+I LTGG  GPI  A       +A +R    ++ FGDRLYV
Sbjct: 118  VNQVPHVKLEWL-EGETDGVIALTGGPDGPISLAMLT-DPALAAQRCERLQQAFGDRLYV 175

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH    +R  E  ++ LAY   LPLVATN   F S EDYEAHD L+ +A   ++++ 
Sbjct: 176  ELQRHGTEAERRAEGGLIDLAYDKGLPLVATNEPHFASTEDYEAHDALLCIASGKLIAET 235

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP----ILPRFIEKE 299
            DR + TPDH  K R+EM  +F+DLPEAL +TVEIA+RC++      P            +
Sbjct: 236  DRVQFTPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGASVSD 295

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              +    E  ELR +A  GL  RL+   ++ G   +DY +RL FEL+VI RMK++GYFLI
Sbjct: 296  AAEAAAAEAAELRRQAEQGLAKRLSVHGLSPGTTEEDYNKRLAFELDVITRMKYAGYFLI 355

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V+DFI+WAK + IPVGPGRGSGAGS+ AY+LTITD+DP+RF LLFERFLNP+R+SMPDFD
Sbjct: 356  VSDFIKWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFD 415

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQDRR EVI YVQ++YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+
Sbjct: 416  IDFCQDRRGEVIEYVQHRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLV 475

Query: 480  PNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P +PA P++  QAI  + + + AR  DP V R  +I+QKLEGL RHASTHAAGIVIGDRP
Sbjct: 476  PQNPAAPITLKQAIEGEPKLQAARDEDPIVARAFDIAQKLEGLTRHASTHAAGIVIGDRP 535

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            LS LVP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT L  ++  L QR + VDL
Sbjct: 536  LSDLVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLDVAVKLLKQRDIHVDL 595

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  +Y +L     +G+FQ+ES+GMR+AL  M+PD  EDIIALV+LYRPGP+ NI
Sbjct: 596  HTLPIDDAPSYQMLARGDVVGVFQVESAGMRRALIDMRPDRFEDIIALVALYRPGPMANI 655

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  RK+G E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LRRAMG
Sbjct: 656  PTYCARKHGDEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLRRAMG 715

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KKI+ EMDKQ+  F+ GA KNG++K  A  IF+LLAKFADYGFNKSHAAAYA++SY TA+
Sbjct: 716  KKIRAEMDKQRAIFVEGAVKNGVAKDAADTIFDLLAKFADYGFNKSHAAAYALVSYHTAY 775

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            MK HYPVEFLAASMTLE+ N +K+ +F  +A++  I++  PSVN     F+VG N I+Y+
Sbjct: 776  MKAHYPVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVGPNTIFYA 835

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            LA +KGVG    + I+EA  D+PF SL DF +RV+ + +N+RV+E L  AGA DC   +R
Sbjct: 836  LAGLKGVGMQAVQQIVEARGDRPFTSLADFSARVNPRAINKRVIECLAAAGAFDCLDSNR 895

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             ++    D I    Q   +  T+   ++F       +  I L +      + R   E   
Sbjct: 896  ARVFGGADAIVAACQRNHEAATSGQNDMFGGLSD--APSIILPQLEPWLPAERLRREYDA 953

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIG 1016
            +GF+ SGHPLD Y   L+++ ++ + E   A   G    ++AA VVS+ +++T+ G+++G
Sbjct: 954  IGFFLSGHPLDDYATALKRLRVQSWAEFCKAVKSGATAGKVAATVVSRMERRTKTGNKMG 1013

Query: 1017 WVTFSEPAKEYEANFF 1032
             +  S+P   +EA  F
Sbjct: 1014 IIGLSDPTGHFEAVLF 1029


>gi|323136417|ref|ZP_08071499.1| DNA polymerase III, alpha subunit [Methylocystis sp. ATCC 49242]
 gi|322398491|gb|EFY01011.1| DNA polymerase III, alpha subunit [Methylocystis sp. ATCC 49242]
          Length = 1153

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 526/1040 (50%), Positives = 697/1040 (67%), Gaps = 18/1040 (1%)

Query: 5    LEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            + K+ P FVHL VH+++SL EGALS+  ++D    D+QPA+A+TDTNNLF+ALEFS+KA 
Sbjct: 1    MTKADPGFVHLHVHTAFSLREGALSIGKLIDLAVRDEQPALAVTDTNNLFAALEFSEKAA 60

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AG+QPI G QL +D  D       G+     + ++VLL  T  GY+ L+ L SR YL  
Sbjct: 61   KAGLQPIAGVQLCVDFGDGKSGGLAGQ--DERLANLVLLAKTEAGYRNLMRLASRAYLET 118

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +   +  + L+ L     E LI LTGG  G +DRAF     + A  RL   +++F +RLY
Sbjct: 119  EQGDAPHVTLAALSADAEE-LIALTGGPDGALDRAFAAGRPEQARARLDVLERMFNNRLY 177

Query: 184  VNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +QRH+   +   E Q++ +AY   LPLVATN   F S  D+EAHD L+ +A  TV S 
Sbjct: 178  IEIQRHKLKLELEVEPQLLDIAYRRGLPLVATNEPYFASLGDFEAHDALLCIAEGTVTSV 237

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             +R RV+P+H+ K R++M ++F+DLPEA  NTVEIARR SF  +   PI+PRF+    DD
Sbjct: 238  SERRRVSPEHWFKTRADMRALFADLPEATANTVEIARRVSFRPKTRKPIMPRFMRDTPDD 297

Query: 303  --IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              + + E  ELR +A  GLE RLA    A+G+  +DY  RLDFEL+ I +M F GYFLIV
Sbjct: 298  RPLNEVEAEELRRQATEGLEARLAAHGPAEGHAREDYFARLDFELSTIEKMGFPGYFLIV 357

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI++AK   IPVGPGRGSGAGS+ AYALTITD+DPLRF L FERFLNP+R+SMPDFDI
Sbjct: 358  SDFIKYAKSKGIPVGPGRGSGAGSLVAYALTITDLDPLRFGLFFERFLNPERVSMPDFDI 417

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ RR EVI YV+++YG +RVAQIITFGS  A+  LR VGR L+MP  QVD+L KL+P
Sbjct: 418  DFCQTRRGEVIEYVRDRYGADRVAQIITFGSFLARGVLRSVGRVLEMPLGQVDKLAKLVP 477

Query: 481  NDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +PA PV+  +A+A + + REA   D  V RL +++  LEGLY +ASTHAAG+VIGDRPL
Sbjct: 478  QNPAKPVTLAEALAGEQKLREAAAEDERVARLFKVAGALEGLYSNASTHAAGVVIGDRPL 537

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
             ++ P+YRD +SD+P TQFNMKW+E AGLIKFDFLGLKTLT+L  + D   +R    DL+
Sbjct: 538  HEVTPLYRDPKSDMPATQFNMKWVEPAGLIKFDFLGLKTLTVLAMAGDLARRRDPDFDLA 597

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +P DD ETY +L    T+G+FQLES+GMR+AL  M  D  EDIIALV+LYRPGP+ NI 
Sbjct: 598  KVPLDDPETYAMLGRGETVGVFQLESAGMRKALVEMHADRFEDIIALVALYRPGPMANIP 657

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y   K G E+    HP I+P+LKET GVIIYQEQVMQIAQ+LSGY+L EAD+LRRAMGK
Sbjct: 658  TYCAVKLGDEEADYYHPKIEPILKETFGVIIYQEQVMQIAQVLSGYTLGEADMLRRAMGK 717

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KIK EMD Q+ERF+ GA +  +   +A  IF+LLAKFADYGFNKSHAAAYA+I+YQTAW 
Sbjct: 718  KIKAEMDAQRERFVKGAIEREVKADLANFIFDLLAKFADYGFNKSHAAAYALIAYQTAWF 777

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----R 834
            K HYP EFLAASMT +    +K+ +F  +AR+  I + PPS+    VDF V         
Sbjct: 778  KAHYPAEFLAASMTFDKSQTDKLAEFRDEARRLGIAVEPPSIRRSGVDFDVAPGSDGKLA 837

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I Y+L+AIKGVG   A  I+ A  D PF SL DF  R++ +++N++VLE+L   GA D  
Sbjct: 838  IRYALSAIKGVGEGQAESIVRARGDLPFKSLSDFARRINPREVNKKVLENLAACGAFDEL 897

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
               R     +++ +   A    ++R      +F   +    D + L + +  N++ R + 
Sbjct: 898  QPDRATAFAAVEPVLAAANRHTEDRKAGQNALFGEAEA---DDLVLPRVTPWNAAERLQR 954

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKG 1012
            E    GF+ SGHPLD Y  +L K+ +  + + VA ++G     RLAA+V+ + +++T+ G
Sbjct: 955  EYDAAGFFLSGHPLDAYAGLLPKLRVSRWSKFVADVKGGATAGRLAAVVLDRAERRTKSG 1014

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            S++G V  S+   +YEA  F
Sbjct: 1015 SKMGIVQLSDTTGQYEAILF 1034


>gi|167624880|ref|YP_001675174.1| DNA polymerase III subunit alpha [Shewanella halifaxensis HAW-EB4]
 gi|167354902|gb|ABZ77515.1| DNA polymerase III, alpha subunit [Shewanella halifaxensis HAW-EB4]
          Length = 1177

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1047 (38%), Positives = 589/1047 (56%), Gaps = 38/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G   +  I+ K+A    PA+A+TD  N+   ++F +    
Sbjct: 22   MSD-PRFVHLRVHSDFSMSDGLSKVKPIIAKVAELGMPAVALTDQTNMCGLVKFYEACHG 80

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG    + +             F    SI  L    +GY  L  L+S  YL   
Sbjct: 81   NGVKPIIGTDFWVKVP-----------GFDEFCSITALAMDNKGYSNLTLLISDAYLRGN 129

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL +   EGLI+L+G   G + RA    +    +  +  +K  F DR Y+
Sbjct: 130  INDKAVIDQEWLVKY-NEGLIILSGAKDGDVGRALLKENQNQVDSLIDFYKSNFPDRYYL 188

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R     V LA   +LP+VATN  +F   E ++AH++ +A+     ++  
Sbjct: 189  ELLRTGRPDEERYLHMAVALAEQKDLPVVATNQVVFNKPEQFDAHEIRVAIYDGFTLADP 248

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   Y K+  EM  +F D+PEA++NTVEIA+RC+  +++H              
Sbjct: 249  RRPKKYSDQQYFKSSEEMCELFEDIPEAIQNTVEIAKRCNATVRLHEYF-----LPNFPT 303

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L + +  GLE RL         +     +Y +RLD EL VI +M F GYFLI
Sbjct: 304  GDLTIEDFLVDVSEKGLEERLEFLFPDPEVRAEKRPEYDERLDIELKVINQMGFPGYFLI 363

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW K N+IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 364  VMEFIQWGKDNDIPIGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 423

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ K+I
Sbjct: 424  VDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMI 483

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   +   +E+   D  V  L+++ + LEG+ R+A  HA G+VI    +
Sbjct: 484  PAEPGMTL-AKAFEVEPGLQESYDGDEEVKDLIDMCRILEGVTRNAGKHAGGVVIAPTKI 542

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-----LAQRGV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L             
Sbjct: 543  TDFSPIYCDTEGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMVNSVKEKNGEE 602

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  I   D + + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 603  PVRIESISLTDPKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 662

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  +  +L  T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 663  LQSGMVDNFIERKHGREEVSYPDAEYQHESLQELLSPTYGIILYQEQVMQIAQVLAGYTL 722

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 723  GGADMLRRAMGKKKPEEMAKQRGTFEEGAIANGVDGPLSMKIFDLVEKFAGYGFNKSHSA 782

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP +F+AA M+ +MDN +KI     +  +  + ++PP VN     
Sbjct: 783  AYALVSYQTLWLKTHYPAQFMAAVMSADMDNTDKIVTLVDECERMGMPLIPPDVNKGLFR 842

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F V ++  I Y + A+KGVG      I++A  + PF  L DFC+R+D KKLNRRV+E L+
Sbjct: 843  FTVDEDLNIVYGIGAVKGVGEGPVDSILKARENGPFKDLFDFCARIDLKKLNRRVIEKLI 902

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945
             AGALD  G  R  ++ +L    + A    K       ++F        D K    + + 
Sbjct: 903  CAGALDNLGPHRAAMIATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQRFVECTP 962

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                V  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ +
Sbjct: 963  WPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTMKAAGLVVATR 1022

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+++G VT  + +   E   F
Sbjct: 1023 VMMTKRGAKMGLVTLDDKSARLEVMLF 1049


>gi|238923437|ref|YP_002936953.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
 gi|238875112|gb|ACR74819.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
          Length = 1181

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1048 (33%), Positives = 554/1048 (52%), Gaps = 33/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL  H+ YSLL+G+  +   + ++      + AITD  N++  +EF + A A  I P
Sbjct: 17   SFCHLHTHTEYSLLDGSNKIKEYVKRVKELGMNSAAITDHGNMYGVVEFYKTAKANDINP 76

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC++ +                     ++LL     GY  L+++VS  +  +      
Sbjct: 77   VIGCEVYVAPNSRFDRETSHG--DDRYYHLILLAENNTGYANLMKIVSIGFT-EGYYYRP 133

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L+    EGLI L+   +G I R         A++    ++  FG D  ++ LQ 
Sbjct: 134  RVDFETLERYH-EGLICLSACLAGEIPRYIVRGFYDEAKEIARKYQDCFGKDNFFLELQD 192

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+     Q+++++   E+ LV TN+  +  E D EAHDVL+ +     VS +DR R
Sbjct: 193  HGIDDQKLVNQQLLRMSKELEIGLVCTNDVHYTYESDAEAHDVLLCIQTGKKVSDEDRMR 252

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  ++K+  +M ++F    EA+ENT +IA RC+  L+     +P++   E  D    
Sbjct: 253  YDGGQFFVKSEEQMRALFPYATEAIENTQKIADRCNVTLEFGNYKIPKYEVPEGYD---S 309

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E  L      G   +            +     +D+EL +I  M F  Y LIV D+I W
Sbjct: 310  AEAFLTELCEKGFREKYIGCGEYSADELKKIHADMDYELGIIKTMGFIEYILIVWDYINW 369

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             + ++  VGPGRGS AGS   Y   ITDIDP++++LLFERFLNP+R+SMPD D+DF    
Sbjct: 370  CRTHDCWVGPGRGSAAGSRVCYCTGITDIDPVKYNLLFERFLNPERVSMPDIDVDFEYAE 429

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R   I YVQ KYGH+ V QI+TFG++ A+  ++ VG+AL  PY++ DRL K++P +    
Sbjct: 430  RYRAIEYVQQKYGHDSVTQIVTFGTMAARGVIKSVGKALDFPYAETDRLAKMVPQELNIT 489

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +  F+    +D  V  +++++++LEGL  H S HAAG+VI     S  VP+ 
Sbjct: 490  ID-KALQMNPEFKGIYDSDARVHEMIDMAKRLEGLPNHTSVHAAGVVIYPGVASDYVPLG 548

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            R      P  ++NM  +E+ GL+K DFLGL+TLT+L+ S+  +   RG+ VD+  I F+D
Sbjct: 549  RA-NDGSPTAEYNMVQLEELGLLKMDFLGLRTLTVLKDSVKNIKASRGIDVDIDHIDFND 607

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T   + T  T G+FQLES+GM+  ++ + P   EDI+A +SLYRPGP+D I  Y   K
Sbjct: 608  KGTLDFIGTGKTEGVFQLESAGMQSFMKELSPQSFEDIVAGISLYRPGPMDFIPNYIKGK 667

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  ++I  + P ++ +L+ T G I+YQEQVMQI Q L+GY++ +AD +RRAM KK +  +
Sbjct: 668  NNPKEISYVTPELESILEPTYGCIVYQEQVMQIVQKLAGYTMGQADNIRRAMSKKKQYVI 727

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            D +++ F+         G   NGI +  A +I++ +  FA Y FNKSHAAAYA IS QTA
Sbjct: 728  DAERQSFVYGDEERGIKGCVANGIDEKAANSIYDSMVDFAKYAFNKSHAAAYAKISVQTA 787

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+K +YPVEF+AA MT  +DN  K  ++    R   I+++PP +N    +F    + + Y
Sbjct: 788  WLKNYYPVEFMAALMTSVIDNSAKAAQYLYSCRDMGIKVLPPDINCGQGEFTAEGDHVRY 847

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKL-NRRVLESLVFAGALDCFG 895
             + AIK +G      I+E       + +L DF  R   K+L N+R +E+L+ AGA D   
Sbjct: 848  GMYAIKSLGRPVIDQIIEERESGGRYRTLSDFIERTCQKELINKRAIENLIKAGACDSLD 907

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFE 953
             +R Q+     +I    Q  +K+      ++F    ++   S ++        ++     
Sbjct: 908  GTRKQMAMVYASIVDRVQHDKKSTMAGQMSLFDLVSDEDRQSFELKYPNVGEYDAEEALA 967

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQ 1005
             E+ VLG Y SGHPL+ Y   L+K       +         V      ++ +  M+ +K 
Sbjct: 968  YEKEVLGIYLSGHPLEKYAATLKKNITANAIDFVLEEESGAVKIEDNAHVVIGGMIATKT 1027

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K T+    + ++T  +     E   FP
Sbjct: 1028 IKFTKYNQAMAFITIEDLTGTVEVIIFP 1055


>gi|291544638|emb|CBL17747.1| DNA polymerase III catalytic subunit, DnaE type [Ruminococcus sp.
            18P13]
          Length = 1161

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1041 (35%), Positives = 586/1041 (56%), Gaps = 35/1041 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL VH+ YSLL+GA  +  ++ +I    Q A+AITD   ++ A+EF Q A  AGI+
Sbjct: 2    PDFVHLHVHTEYSLLDGACRIQQLIQRIKELGQTAVAITDHGCMYGAVEFWQAAKEAGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC++ +  +      ++  T   +   +VLL     GYQ LI+LVS  Y+ +     
Sbjct: 62   PIIGCEVYVAPRSRHDKVHRLDT---SPYHLVLLCRNQTGYQNLIKLVSLGYI-EGFYNK 117

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
             R+ L  L++   EGLI L+   +G I R         A++  L ++++FG D  Y+ +Q
Sbjct: 118  PRVDLELLEQYH-EGLICLSACLAGEIPRRLVNGDYAGAKEAALRYRQIFGADSYYLEVQ 176

Query: 188  RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
             H   ++     Q+ +L+    +PLVATN++ +++ ED     VL+ +  +  V      
Sbjct: 177  DHGIREQKTILPQLYRLSRETGIPLVATNDAHYITREDASLQHVLLCIQTNKTVEDPTGM 236

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               T + Y+K+ +EM  +FS +P+A+ NTV IA +C+         LP F      D   
Sbjct: 237  GFETDEFYVKSGAEMAELFSAVPDAISNTVRIAEQCNVEFTFGQLKLPAFQ----MDGVT 292

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +     ++    GL  R  +        A + R+R+ +EL VI +M +  YFLIV DFI+
Sbjct: 293  DTTAFFQHLCREGLHRRYGED------PAPEIRERMQYELRVIQQMGYVDYFLIVWDFIR 346

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A++  +PVGPGRGSGAGS+ AY + IT IDP+R+ LLFERFLNP+R+SMPDFDIDFC +
Sbjct: 347  YARQIGVPVGPGRGSGAGSLCAYCIGITGIDPMRYHLLFERFLNPERVSMPDFDIDFCIE 406

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             R  VI YV  KYG +RVAQII F +++A+AA+RD GRA+ +PY   DR+ KLIP +   
Sbjct: 407  GRQRVIDYVIEKYGSDRVAQIIAFDTMKARAAVRDTGRAMALPYGLCDRVAKLIPGELNM 466

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +   A+       E    D  V +LL+++Q+LEG+ RHA+THAAG+VI   P+S+ VP+
Sbjct: 467  TI-AGAMKVSKELTELYDTDSRVHKLLDMAQRLEGMPRHATTHAAGVVIASAPVSEFVPL 525

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
             ++   +  VTQ+ M  +E+ GL+K DFLGL+ LT+++ +   + Q      +  IP DD
Sbjct: 526  QKN--EESIVTQYPMTTLEQLGLLKMDFLGLRNLTVIRDACRAIQQLEPDFRIDQIPLDD 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
               Y +++   T G+FQ ES+GM++ L  ++P C+ED+IA++SLYRPGP+++I  Y   +
Sbjct: 584  PAVYRMMSQGKTGGVFQFESAGMQRVLTKLEPTCMEDLIAVISLYRPGPMESIPRYIRNR 643

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +  E+I   HPL+ P+L+ T G ++YQEQVM+I + L+GYS   AD++RRAM KK  + M
Sbjct: 644  HAPEQITYAHPLLKPILQVTYGCMVYQEQVMEICRSLAGYSYGRADLVRRAMAKKKHKVM 703

Query: 726  DKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            + +++ F              GA  NG+ +  A  IF+ +  FA Y FNKSHAAAYA ++
Sbjct: 704  EAERQTFLWGSRESDGTVSCPGAVANGVPEATANEIFDQMTSFASYAFNKSHAAAYAYLA 763

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++K HY  +++AA MT  + N  K+ ++     ++ + +  P VN   + F VG  
Sbjct: 764  YQTAYLKCHYFPQYMAALMTSVLSNTPKLMEYIALCEEYGMAVCRPDVNVSDMGFTVGSK 823

Query: 834  RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I++ L A+KG+G      +++   +   + S  DFC R+    + +R +++L+  GALD
Sbjct: 824  GIHFGLLAVKGLGKGVISQVIQERQEHGLYHSFLDFCERMVQLDVGKRTVDNLIRCGALD 883

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
              G++R ++L   + I        +       ++F  +     + + + K      +   
Sbjct: 884  GLGHNRREMLMCYEQIMDAQAGSSRTLIQGQMDLFG-QGSAMPESVPIPKMEEFPPNQLL 942

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              E+ + G Y SGHPL   +   + + +   +E      G  I +  M+ S +    R G
Sbjct: 943  RMEKELTGMYLSGHPLGHLQWCRKLLRLPELKELQDEKDGTGISVLCMLQSVKPHVARNG 1002

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
             ++ ++T  + +   EA  FP
Sbjct: 1003 EKMCFLTLEDLSGTMEAVVFP 1023


>gi|90020753|ref|YP_526580.1| DNA polymerase III subunit alpha [Saccharophagus degradans 2-40]
 gi|89950353|gb|ABD80368.1| DNA polymerase III, alpha subunit [Saccharophagus degradans 2-40]
          Length = 1173

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1055 (38%), Positives = 586/1055 (55%), Gaps = 48/1055 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL+V + +SL++  + +  ++ + A  Q PAIA+TD +N F  ++F + A  AG+
Sbjct: 2    SSQFVHLRVRTEFSLVDSIIRVKPLVARAAQAQMPAIAVTDFHNFFGLVKFYKAAQGAGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI GC   ++  D                   LL    EGY+ + EL+S  Y   Q   
Sbjct: 62   KPICGCDFRMEPLDEESNPAI----------FTLLAMNPEGYRNITELISLSYQKGQKHG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WL++  + G+I L+GG  G + +A   N    AE  L  +  ++ +R Y+ LQ
Sbjct: 112  EPYIKFEWLEKF-SAGVIALSGGRVGEVGQALVGNRQVDAEAALQRWIDVYPNRFYIELQ 170

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R     +     + + LA  ++LP+VATN+  FL ++ ++ H+  + +     +    R 
Sbjct: 171  RTGRENEERYLHKAMALAEKYQLPVVATNDVRFLDQDLFDVHEARVCIGEGRALDDPRRE 230

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  T   YLK   EM  +FSD+PEA+ENTVEIA+RCS  +Q+    LP +   E      
Sbjct: 231  RKYTDQQYLKTAEEMQELFSDIPEAIENTVEIAKRCSIEIQLGTYFLPEYPIPEGM---- 286

Query: 306  EEENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             E +     +  GLE RL     +         Q Y  RL FEL++I +M F GYFLIV 
Sbjct: 287  TENSFFEKISYEGLERRLKTILKEDDPDYATKKQPYLNRLKFELDIIIQMGFPGYFLIVM 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFIQWAK +NIPVGPGRGSGAGS+ AY L ITD+DPL++ LLFERFLNP+R+SMPDFD+D
Sbjct: 347  DFIQWAKDHNIPVGPGRGSGAGSLVAYVLDITDLDPLQYDLLFERFLNPERVSMPDFDVD 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++RD+VI YV + YG + V+QIITFG++ AKA +RDV R     Y   D+L K+IP 
Sbjct: 407  FCMEKRDQVISYVADNYGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPP 466

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   ++     ++   RE    D     + +++ KLEG+ R+   HA G+VI    L  
Sbjct: 467  DPGMTLTKAFEQEEP-LREFLAMDGDGQEIWDMALKLEGITRNVGKHAGGVVIAPTRLVD 525

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+Y D      VTQF+   +E+AGL+KFDFLGL+TLT++  ++  +  +        +
Sbjct: 526  FAPLYCDESGSGLVTQFDKNDVEEAGLVKFDFLGLRTLTIIDWAVKMIDAQRTKLGDPPL 585

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+S IP DD +T+ LL    T  +FQLES GM+  +  ++PD +E++IALV+L+RPGP+ 
Sbjct: 586  DISAIPLDDAKTFALLKRAETTAVFQLESRGMKDLITRLKPDTLEEMIALVALFRPGPLQ 645

Query: 657  NIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V       +   +         H  + P+L+ T GVI+YQEQVMQIAQ L+GYSL  
Sbjct: 646  SGMVDDFINRKHGRAQVAYPDAKYQHECLQPILEPTYGVIVYQEQVMQIAQELAGYSLGG 705

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA+  GI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 706  ADLLRRAMGKKKPEEMAKQRSTFQDGAASKGIDPELAIKIFDLVEKFAGYGFNKSHSAAY 765

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQTAW+K H+P  F+AA+M+ +MD  +K+  F ++ R   + ++PP VN     F 
Sbjct: 766  ALVSYQTAWLKAHFPAHFMAATMSSDMDKTDKVVTFIEECRNMKLNLLPPDVNRGEFQFT 825

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  DN + Y L AIKG+G      I+ A  D   F  L DFC+RVDSKK+N+R LE+LV 
Sbjct: 826  VDDDNNVIYGLGAIKGLGEGPVEAIIAARKDGGDFKDLFDFCARVDSKKINKRALEALVR 885

Query: 888  AGALDCFGY------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH----EKGTFSDK 937
            +GALD  G        R  +  ++    K A+    N      ++F              
Sbjct: 886  SGALDNLGPGIDVDYDRAVMAAAVPEAVKAAEQSAANANAGMSDLFGEVVPVASERGDAY 945

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
                     +   R   E+  LG Y +GHP+D Y   L+ +                +  
Sbjct: 946  SEFTHVRRWSLKERLNGERDTLGLYLTGHPIDEYDEELKHLVSNRIVNLKPDRAKQKV-- 1003

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A +VV+ +  KT++G ++ +VT  +     E   F
Sbjct: 1004 AGLVVAFRVMKTKRGDKMAFVTLDDRTGRLETAVF 1038


>gi|86146874|ref|ZP_01065193.1| DNA polymerase III subunit alpha [Vibrio sp. MED222]
 gi|218710303|ref|YP_002417924.1| DNA polymerase III subunit alpha [Vibrio splendidus LGP32]
 gi|85835326|gb|EAQ53465.1| DNA polymerase III subunit alpha [Vibrio sp. MED222]
 gi|218323322|emb|CAV19499.1| DNA polymerase III alpha subunit [Vibrio splendidus LGP32]
          Length = 1159

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1048 (39%), Positives = 608/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+++G   +  ++ K+A    PA+A+TD  NL   ++F   A  
Sbjct: 1    MSD-PKFVHLRVHSDFSMVDGLSKVPPLVKKVAEMGMPALALTDFTNLCGLVKFYGTAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG               Q       +  + ++ ++ +GY  L  L+S+ YL   
Sbjct: 60   CGVKPIIGADF----------LMQSPDFGDELTKLTVIATSNKGYNNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I   WL E   EGLI+L+G   G I +A    + ++    +  +K  F DR Y+
Sbjct: 110  VQHQPVIDKEWLIE-HAEGLILLSGAKEGEIGKALLKGNRELVASSVEFYKTHFADRFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        ++LA   +LP+VATN  +F+SE+ ++AH++ +A+     +   
Sbjct: 169  ELIRTGRTDEESYLHFALELAEQEDLPVVATNEVVFISEDLFDAHEIRVAIHDGFTMVDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL++  EM  +FSD+PEALEN+VEIA+RC+  +++       +       
Sbjct: 229  RRPKNYSPQQYLRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGE-----YFLPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA        +     +Y +RL  EL V+  M F GYFLI
Sbjct: 284  EGLAIEDFLIKKSEEGLERRLAFLFPDEKVRAERRPEYDERLKIELEVVNNMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 404  IDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +    +A +    E    D  V  L++  + LEG  R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLEKAFLA-EPALPELYDGDEEVRELIDKCRILEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPIYADAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLAKEGKD 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  +++LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVRIESIPLDDQASFNLLQNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E +        H  +   L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAVSYPDETWQHESLKETLEPTYGIILYQEQVMQIAQILAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRGTFKEGAEANGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVIGLVDECFRMKLKLLPPDINSGLYR 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA      F  L DFC+R+D KK+N+RV+E L
Sbjct: 823  FNVDEDGAIVYGIGAIKGVGEGPIEAIIEARNKGGYFKDLFDFCARLDLKKVNKRVIEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GALD  G  R  ++ SL +  K A       +    ++F        + +    +  
Sbjct: 883  ILSGALDRLGPHRAAMMASLKDAVKAASQHHHAESFGQSDMFGVLTDAPEEVEHKYTQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L K      +++  T R  ++ +A +V++ 
Sbjct: 943  KWPEKVWLEGERETLGLYLTGHPVNAYIKELAKYTSCRLKDATPTRRDQSLTIAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|291528373|emb|CBK93959.1| DNA polymerase III catalytic subunit, DnaE type [Eubacterium rectale
            M104/1]
          Length = 1166

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1048 (33%), Positives = 554/1048 (52%), Gaps = 33/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL  H+ YSLL+G+  +   + ++      + AITD  N++  +EF + A A  I P
Sbjct: 2    SFCHLHTHTEYSLLDGSNKIKEYVKRVKELGMNSAAITDHGNMYGVVEFYKTAKANDINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC++ +                     ++LL     GY  L+++VS  +  +      
Sbjct: 62   VIGCEVYVAPNSRFDRETSHG--DDRYYHLILLAENNTGYANLMKIVSIGFT-EGYYYRP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L+    +GLI L+   +G I R         A++    ++  FG D  ++ LQ 
Sbjct: 119  RVDFETLERYH-DGLICLSACLAGEIPRYIVRGFYDEAKEIARKYQDCFGKDNFFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+     Q+++++   E+ LV TN+  +  E D EAHDVL+ +     VS +DR R
Sbjct: 178  HGIDDQKLVNQQLLRMSKELEIGLVCTNDVHYTYESDAEAHDVLLCIQTGKKVSDEDRMR 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  ++K+  +M ++F    EA+ENT +IA RC+  L+     +P++   E  D    
Sbjct: 238  YDGGQFFVKSEEQMRALFPYATEAIENTQKIADRCNVTLEFGNYKIPKYEVPEGYD---S 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E  L      G   +            +     +D+EL +I  M F  Y LIV D+I W
Sbjct: 295  AEAFLTELCEKGFREKYIGCGEYSVDELKKIHADMDYELGIIKTMGFIEYILIVWDYINW 354

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             + ++  VGPGRGS AGS   Y   ITDIDP++++LLFERFLNP+R+SMPD D+DF    
Sbjct: 355  CRTHDCWVGPGRGSAAGSRVCYCTGITDIDPVKYNLLFERFLNPERVSMPDIDVDFEYAE 414

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R   I YVQ KYGH+ V QI+TFG++ A+  ++ VG+AL  PY++ DRL K++P +    
Sbjct: 415  RYRAIEYVQQKYGHDSVTQIVTFGTMAARGVIKSVGKALDFPYAETDRLAKMVPQELNIT 474

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +  F+    +D  V  +++++++LEGL  H S HAAG+VI     S  VP+ 
Sbjct: 475  ID-KALQMNPEFKGIYDSDARVHEMIDMAKRLEGLPNHTSVHAAGVVIYPGVASDYVPLG 533

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            R      P  ++NM  +E+ GL+K DFLGL+TLT+L+ S+  +   RG+ VD+  I F+D
Sbjct: 534  RA-NDGSPTAEYNMVQLEELGLLKMDFLGLRTLTVLKDSVKNIKASRGIDVDIDHIDFND 592

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T   + T  T G+FQLES+GM+  ++ + P   EDI+A +SLYRPGP+D I  Y   K
Sbjct: 593  KGTLDFIGTGKTEGVFQLESAGMQSFMKELSPQSFEDIVAGISLYRPGPMDFIPNYIKGK 652

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  ++I  + P ++ +L+ T G I+YQEQVMQI Q L+GY++ +AD +RRAM KK +  +
Sbjct: 653  NNPKEISYVTPELESILEPTYGCIVYQEQVMQIVQKLAGYTMGQADNIRRAMSKKKQYVI 712

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            D +++ F+         G   NGI +  A +I++ +  FA Y FNKSHAAAYA IS QTA
Sbjct: 713  DAERQSFVYGDKERGIKGCVANGIDEKAANSIYDSMVDFAKYAFNKSHAAAYAKISVQTA 772

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+K +YPVEF+AA MT  +DN  K  ++    R   I+++PP +N    +F    + + Y
Sbjct: 773  WLKNYYPVEFMAALMTSVIDNSAKAAQYLYSCRDMGIKVLPPDINCGQGEFTAEGDHVRY 832

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKL-NRRVLESLVFAGALDCFG 895
             + AIK +G      I+E       + +L DF  R   K+L N+R +E+L+ AGA D   
Sbjct: 833  GMYAIKSLGRPVIDQIIEERESGGRYRTLSDFIERTCQKELINKRAIENLIKAGACDSLD 892

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFE 953
             +R Q+     +I    Q  +K+      ++F    ++   S ++        ++     
Sbjct: 893  GTRKQMAMVYASIVDRVQHDKKSTMAGQMSLFDLVSDEDRQSFELKYPNVGEYDAEEALA 952

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQ 1005
             E+ VLG Y SGHPL+ Y   L+K       +         V      ++ +  M+ +K 
Sbjct: 953  YEKEVLGIYLSGHPLEKYAAALKKNITANAIDFVLEEESGSVKIKDNAHVVIGGMIATKT 1012

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K T+    + ++T  +     E   FP
Sbjct: 1013 IKFTKYNQAMAFITIEDLTGTVEVIIFP 1040


>gi|114321000|ref|YP_742683.1| DNA polymerase III, alpha subunit [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227394|gb|ABI57193.1| DNA polymerase III, alpha subunit [Alkalilimnicola ehrlichii MLHE-1]
          Length = 1182

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1071 (39%), Positives = 627/1071 (58%), Gaps = 58/1071 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL VHS +SL +G L +  ++D +A    PA+AITD  NLF  ++F + A A
Sbjct: 1    MSAQSGFVHLNVHSEFSLSDGILRIPELVDAVAGQGMPAVAITDQGNLFGMVKFYKAALA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PI+G ++ ++ ++  +             ++ LL    +GY  L  L+S  Y   +
Sbjct: 61   AGVKPIVGAEIRVEDEEAER----------DHSALTLLCRDLDGYAALSRLLSLSYQQGR 110

Query: 125  -GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                +  +  +WL+    EGLI+L+GG  G + +A    +++ AE     +   F D  +
Sbjct: 111  TVDDTPVVQRAWLEADH-EGLIVLSGGKDGDVGKALLAGNTRRAESLARWYAGHFPDAYF 169

Query: 184  VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQR     D       V LA    LP+VATN   FL+ +DY+AH+V + +     +  
Sbjct: 170  LELQRTGRPGDEDHLHAAVALATELALPVVATNAVRFLAADDYDAHEVRVCIHDGYTLDD 229

Query: 243  KDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RP R T   YL++ +EM ++FSDLPEALENTVEIARRCS  L +   +LP F   E  
Sbjct: 230  PKRPRRYTNQQYLRSPAEMGALFSDLPEALENTVEIARRCSLDLTLGENVLPDFPIPEGL 289

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYH----AQDYRQRLDFELNVIARMKFSGYF 357
             I    E  L  +A+ GLE RL +  +A+G       + YRQRLD+EL +I +M F GYF
Sbjct: 290  TI----EEFLHQEALRGLEQRLEERGLAEGETEEGVRETYRQRLDWELGIINQMGFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK+++IPVGPGRGSGAGS+ AYAL ITD+DPLR+ LLFERFLNP+R+SMPD
Sbjct: 346  LIVADFIRWAKEHDIPVGPGRGSGAGSLVAYALAITDLDPLRYDLLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC ++RDEVI YV  +YG E+V+QI T G++ A+A +RDVGR L   Y  VDR+ K
Sbjct: 406  FDVDFCMEQRDEVIEYVARRYGREKVSQIATHGTMAARAVVRDVGRVLGHGYGYVDRIAK 465

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L+P +P   ++ +A   +   +     D     LL ++ KLEGL R+   HA G+VI   
Sbjct: 466  LVPFEPGMQLT-KAFELEPELKALYEKDEEAGPLLSMALKLEGLARNVGKHAGGVVIAPT 524

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD----FLAQRG 593
             L+   P+Y +   +   TQ++   +E+ GL+KFDFLGL+TLT++  ++        QRG
Sbjct: 525  ALTDFSPLYCEPGGEGLATQYDKDDVEEVGLVKFDFLGLRTLTIIDWTVKAVNALREQRG 584

Query: 594  VKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                D++ IP DD  T+ LL    T  +FQLES GM++ ++ +QPD  EDIIALV+L+RP
Sbjct: 585  ETPLDIARIPLDDRATFDLLKRCQTTAVFQLESRGMKELIKRLQPDSFEDIIALVALFRP 644

Query: 653  GPIDNIV--VYNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +   + +RK+G+ ++        H  ++P+LK T GVI+YQEQVMQIAQ L+GY
Sbjct: 645  GPLQSGMVDDFIDRKHGRAQVAYPTPELHHDDLEPILKPTYGVILYQEQVMQIAQALAGY 704

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            SL  AD+LRRAMGKK   EM KQ+E F+ GA ++G+S+  A  IF+L+ KFA YGFNKSH
Sbjct: 705  SLGAADLLRRAMGKKKAAEMAKQREIFLKGAQEHGLSEAHAGAIFDLMEKFAGYGFNKSH 764

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAYA++SYQTAW+K HYP  F+A+ ++ +MDN +K+  F ++ R+  + + PP VN   
Sbjct: 765  SAAYALLSYQTAWLKHHYPAPFMASVLSSDMDNTDKVVIFIEECREMGLTVRPPDVNRSG 824

Query: 826  VDFKVGDNR-IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883
              F+  D + I Y L A+KGVG +    I+E   A  PF  L+D C+RVD +K+NRRVLE
Sbjct: 825  YRFRAEDEQTIIYGLGAVKGVGQSALDAIIEERDAHGPFKDLQDLCNRVDLRKVNRRVLE 884

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE------KGTFSDK 937
            +L  +G+LD    +R   +  L      A+   +N     E++F                
Sbjct: 885  ALCRSGSLDSLIPNRATGMAWLPEALAAAEQKTRNAAAGQEDLFGLPGDGAAVAEAEEPH 944

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT-------- 989
             +  + +  +   R   E+  LG + +GHP+D Y+  L  +  +   + +A         
Sbjct: 945  FSTPEQAEWDEHDRLAAEKETLGLFLTGHPIDPYEAELSHLAERRIAQVLAAAGEPGEKP 1004

Query: 990  -------IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                     G ++R+  +VVS + + T  G R+  +   +     EA  FP
Sbjct: 1005 ENGRGRRRNGPSVRVVGLVVSLRTRNTASGGRMASLVLDDRTARMEAMLFP 1055


>gi|160939913|ref|ZP_02087260.1| hypothetical protein CLOBOL_04804 [Clostridium bolteae ATCC BAA-613]
 gi|158437347|gb|EDP15112.1| hypothetical protein CLOBOL_04804 [Clostridium bolteae ATCC BAA-613]
          Length = 1161

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1048 (35%), Positives = 573/1048 (54%), Gaps = 41/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +  +  +       ++A+TD   ++  ++F + A  AGI+P
Sbjct: 2    AFTHLHVHTEYSLLDGSCKIRELTARAKELGMDSMAVTDHGVMYGVIDFYKAAREAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +          +  +       +VLL    +GY+ L+++VS+ + +D      
Sbjct: 62   ILGCEVYVAPGSRFDR--ETVSGEDRYYHLVLLAENNKGYENLMKIVSKGF-VDGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L+    EG+I L+   +G + R       + A +    +  +FG D  ++ LQ 
Sbjct: 119  RVDYEVLRTYH-EGVIALSACLAGEVQRCLTRGMYEEAVRASEKYVDIFGKDNFFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D+      +++++    L LVATN+  +   ED +AHD+L+ +     V+ +DR R
Sbjct: 178  HGLPDQKLVNQGLMRMSRDTGLKLVATNDIHYTFAEDEKAHDILLCIQTGKKVADEDRMR 237

Query: 248  VTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y      EM ++F   PEA+ENT  IA RC+  ++     LP++   E  D    
Sbjct: 238  YEGGQYYCKSEEEMRALFPYAPEAIENTHMIAERCNVEIEFGVTKLPKYEVPEGFD---- 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L +    G + R                 RLD+EL+VI  M +  YFLIV DFI +
Sbjct: 294  SWSYLNHLCREGFKTRYPDDDGTLSS-------RLDYELDVIRSMGYVDYFLIVWDFINY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I VGPGRGS AGS+ +Y L IT+IDP+R++LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 347  ARSQDIIVGPGRGSAAGSIVSYTLGITNIDPVRYNLLFERFLNPERVSMPDIDIDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG ++V QI+TFG+L AK  +RDVGR L +PYS  D + K+IP D    
Sbjct: 407  RQEVIDYVVRKYGKDQVVQIVTFGTLAAKGVVRDVGRVLDLPYSLCDTIAKMIPGDLGMT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   ++A   D  V  L+++S++LEGL RH S HAAG+VIG R + + VP+ 
Sbjct: 467  LD-KALTMNPDLKKAYNEDEQVHYLIDMSRRLEGLPRHTSMHAAGVVIGSRSIDEFVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
            R        TQF M  IE+ GL+K DFLGL+TLT++Q ++    +   + +D+  I FDD
Sbjct: 526  RAS-DGTITTQFTMTTIEELGLLKMDFLGLRTLTVIQNAVRLAEKDYGITIDIDHIDFDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +    + T  T G+FQLES+GM+  ++ ++ + +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 585  KKVLESIGTGRTEGVFQLESAGMKSFMKELKAENLEDIIAGISLYRPGPMDFIPKYLKGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N +  I    P ++P+L  T G I+YQEQVMQI + L+GY++  +D++RRAM KK    M
Sbjct: 645  NDRASITYDCPQLEPILSPTYGCIVYQEQVMQIVRDLAGYTMGRSDLVRRAMSKKKTSVM 704

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            +K+++ F+         G   NGI +  A +I++ +  FA Y FNKSHAAAYAV+SYQTA
Sbjct: 705  EKERQNFVYGSQSEGVKGCVNNGIDEKTANHIYDEMIDFAKYAFNKSHAAAYAVVSYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVGDNRIY 836
            ++K +YP EF+AA MT  MDNV K  ++    R+   I ++PP +N     F V  + I 
Sbjct: 765  YLKYYYPREFMAALMTSVMDNVSKFSEYVLTCRRMMGIPVLPPDINEGESGFSVSGDAIR 824

Query: 837  YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y L+AIK VG      I+     + PF S+EDF  R+  K++N+R LE+ + +GALD   
Sbjct: 825  YGLSAIKSVGKPVTEVILAERERNGPFRSMEDFVGRMSMKEVNKRTLENFIKSGALDTLP 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFE 953
             +R Q +     + +     +K+      ++F  A E+     +IT       +      
Sbjct: 885  GTRRQKMAVAPTMLEEKAREKKSMFEGQLSLFDIAGEEDRNEFQITFPDVGEYSKDELLA 944

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQ 1005
             E+ +LG Y SGHPLD Y+   R+       +              G+   +  +V  K 
Sbjct: 945  FEKEILGVYISGHPLDDYEDTWRRNITATSAQFIVDEETDAAGVADGSRAVIGGLVAGKT 1004

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K TR    + ++T  +     E   FP
Sbjct: 1005 VKTTRTNQLMAFITLEDLLGPVEVIVFP 1032


>gi|152992163|ref|YP_001357884.1| DNA polymerase III subunit alpha [Sulfurovum sp. NBC37-1]
 gi|151424024|dbj|BAF71527.1| DNA polymerase III, alpha subunit [Sulfurovum sp. NBC37-1]
          Length = 1188

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1064 (36%), Positives = 605/1064 (56%), Gaps = 43/1064 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +++  +  P F HL +H+ YSLL+GA  +  +  K+      ++A+TD  N+F  ++F  
Sbjct: 1    MSEEPKLKPQFTHLHLHTEYSLLDGANKIKALAKKVKELGMTSVAMTDHGNMFGTIDFYN 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
                 GI+PIIG +  +  Q  L     G         + L      GY+ L+ L S+ Y
Sbjct: 61   TMRKEGIKPIIGMEAYVHNQPEL-----GDKSVRQRFHLCLYAKNEAGYKNLMFLSSKAY 115

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF---------FNSSQVAEKRL 171
            + +      RI  + L+E   EGL+  +    G ++                 + A++  
Sbjct: 116  I-EGFYYYPRINWNLLKE-HAEGLVCSSACLQGEVNWHLNLSERNLKFGAKGYEEAKRIA 173

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            L +K++FGD  Y+ L RH   D++R   Q++QL+    + +VATN++ + + +D +AH+ 
Sbjct: 174  LKYKEVFGDDFYLELMRHGIGDQHRIDKQILQLSQETGIKIVATNDTHYTNPQDADAHEA 233

Query: 231  LMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL---- 285
             M +A + +    +R R +  + Y+K+  +M  +F+D+PEALE T EI  +C+  +    
Sbjct: 234  FMCIAMNKLYDDPNRLRHSVHEFYVKSPEQMAELFADIPEALEATQEIVDKCNLEIKLGN 293

Query: 286  ----------QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
                      +    I  +  E E +   + ++     ++  GL  RL    I      Q
Sbjct: 294  PTPPNFKFAREKAKEIGLKLPEPEVEYSLENDKILFIEESKRGLVERLK---IVPEEKHQ 350

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
            +Y  RL  E+++I  MKF GY LIV +F+  AK+  IPVGPGRGS AGS+ AYAL ITDI
Sbjct: 351  EYWDRLQVEIDIINNMKFPGYMLIVWEFVDAAKRMGIPVGPGRGSAAGSLVAYALRITDI 410

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DP+ + LLFERFLNP+R+SMPD D+DFCQ RR E++ YV  KYG   VAQIITFG L AK
Sbjct: 411  DPMPYGLLFERFLNPERISMPDIDMDFCQARRQEILDYVVEKYGRVNVAQIITFGKLLAK 470

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
              +RDV R L MPYS+ D + KLIP++    +       + + +E   +DP   R  E +
Sbjct: 471  GVIRDVARVLDMPYSKADAMAKLIPDELGIDLKAS-YEKEPKIKELLESDPQAKRTWEYA 529

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
              LEGL R+A THAAG+VI +  L Q  P+++    D   TQ++ K++E   LIKFDFLG
Sbjct: 530  LALEGLNRNAGTHAAGVVISNEALWQKTPLFKPSGLDTLATQYSGKYVEDVDLIKFDFLG 589

Query: 576  LKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            LKTLT+++++L  + +R   +++      +D + Y  ++T  TLG+FQ+ES+GM+   + 
Sbjct: 590  LKTLTVIEEALQLVEKRHGKRINFVEENIEDPKVYDYISTGETLGLFQIESAGMQDLAKK 649

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            ++P   EDIIA+++LYRPGP+++ +   +  RK+G+ +I    P ++P+LK T GVI+YQ
Sbjct: 650  LKPSSFEDIIAMLALYRPGPMESGMLDDFVERKHGRAEITYAFPELEPILKPTYGVIVYQ 709

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQI Q + G+SL  AD++RRAMGKKIKEEMDK K+ F  GA++ G  +  A ++F+L
Sbjct: 710  EQVMQIVQTIGGFSLGGADLVRRAMGKKIKEEMDKLKDEFAEGAAEKGFDRAKAADLFDL 769

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSH+AAYA++++ T+++K +YP EF+AA +TLE +N +K+ K+  + +Q 
Sbjct: 770  IVKFAGYGFNKSHSAAYAMVTFYTSYLKYYYPTEFMAAILTLEKNNTDKVVKYVDELKQM 829

Query: 813  NIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
             I+++PP +N   + F+     GD  + + + AIKG G      ++EA  +  F    DF
Sbjct: 830  GIKLLPPDINRSGLVFEATNIDGDEVVMFGMGAIKGAGDIAITSMLEAREEGAFRDFSDF 889

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
             SR+DS K+N++V+ESL+ AGALD FGYSR  +L  +++I   A+   + R     ++F 
Sbjct: 890  VSRIDSSKVNKKVIESLIKAGALDSFGYSRKAMLSQIEDIIDTAKKAGEARKMAVGSLFG 949

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
              +   S  + L            E E+  LGFY SGHPLD Y+  L  +      E   
Sbjct: 950  EGEEMTSVTLELSHMEEFEPMEILEMEKESLGFYVSGHPLDKYRETLESINYTLSSEIDD 1009

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               G+       + S  +K ++KG++ G     +     E   F
Sbjct: 1010 LADGSQALFIGKIESITEKISKKGNKFGIANIMDLHGNIELMLF 1053


>gi|318041279|ref|ZP_07973235.1| DNA polymerase III subunit alpha [Synechococcus sp. CB0101]
          Length = 1178

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1054 (37%), Positives = 584/1054 (55%), Gaps = 37/1054 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++ +      PA+A+TD   ++ A+E  +      ++P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPAMVKRAEELGMPALALTDHGVMYGAIELLKLCKGTAVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +            K        +V+L   A GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPNPPKK---ERRYHLVVLAKNAVGYRNLVKLTSISHLRGMRGRGI 118

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L++  +EGLI+ T    G + +A       VA      ++ +FGD  Y+ 
Sbjct: 119  FSRACIDKPTLEQY-SEGLIVATACLGGELSQAILRGRPDVARDVARWYQGVFGDDFYLE 177

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V+++    +PL+ATN++ +L+  D EAHD L+ +    +V+ + 
Sbjct: 178  IQDHGSPEDRIVNVELVRISQELGIPLIATNDAHYLTSNDAEAHDALLCILTGKLVTDEK 237

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R R T   Y+K   EM+++F+D   PE +   V    R +  ++ +  +    + +    
Sbjct: 238  RLRYTGTEYIKGEQEMLALFADHLEPEVVAEAVANTARVAEKVEDYDILGRYQMPRFPIP 297

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                  + LR  +  GL  RL            +Y +RL FEL V+ +M F  YFL+V D
Sbjct: 298  EGHTPVSYLREVSEQGLRARLQ--LPENEVFTPEYGERLTFELQVMEQMGFPTYFLVVWD 355

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I++A++N IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 356  YIRFARENGIPVGPGRGSAAGSLVAYALGITNIDPVTNGLLFERFLNPERKSMPDIDTDF 415

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV  +YG E+VAQIITF  + +KA L+DV R L +PY   DRL KLIP  
Sbjct: 416  CIERRGEVIDYVTRRYGEEKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 475

Query: 483  PAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
               P  L+ +  D      FRE    DP V R ++++ ++EG  +    HAAG+VI   P
Sbjct: 476  RGKPAKLKEMIGDESPAPEFREKYQNDPQVKRWVDMAMRIEGTNKTFGVHAAGVVIAADP 535

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            L ++VP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K++D + Q  G KVD
Sbjct: 536  LDEVVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTIDLVEQSTGQKVD 594

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               +P DD  TY LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYRPGP+D 
Sbjct: 595  PDALPLDDPGTYGLLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPGPLDA 654

Query: 658  --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  + NRK+G+E I   H  ++P+L+ET G+++YQEQ+M+IAQ L+GYSL EAD+LRR
Sbjct: 655  GLIPKFINRKHGREAIDFAHAKLEPILQETYGIMVYQEQIMRIAQDLAGYSLGEADLLRR 714

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK K EM+K +  F+ GA++ G+   IA  +FE +  FA+Y FNKSH+ AY  ++YQ
Sbjct: 715  AMGKKKKSEMEKHQSIFVKGATERGVDSKIAEALFEQMVLFAEYCFNKSHSTAYGAVTYQ 774

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYPV ++AA +T+     +K++++  +     I++MPP VN   +DF    +RI
Sbjct: 775  TAYLKAHYPVAYMAALLTVNAGTTDKVQRYISNCNAMGIEVMPPDVNASGIDFTPVGDRI 834

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L+A++ +G    R ++EA  AD PF SL D C R+    LNRR LESL+  GALD  
Sbjct: 835  LFGLSAVRNLGDGAIRALLEARSADGPFRSLADLCDRIPGTTLNRRSLESLIHCGALDAL 894

Query: 895  GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-------------KIT 939
                +R QL+  LD I  +A    ++R +   N+F    G  +D                
Sbjct: 895  EPQANRAQLMADLDLIVDWASSRARDRASGQGNLFDLMGGGSADAVADAAGSGDLSTAPK 954

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
                     + +   E+ ++GFY S HPL      ++ +   G            + +  
Sbjct: 955  AAPVPDYPPTEKLRLEKDLVGFYLSDHPLKQLTRPVQLLSPVGLGSLEEQADKTRVSVVG 1014

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            MV   +   TRKG R+  +   + +   EA  FP
Sbjct: 1015 MVAGLRPVTTRKGDRMAVLQLEDLSGSCEAVVFP 1048


>gi|332174819|gb|AEE24073.1| DNA polymerase III, alpha subunit [Glaciecola agarilytica
            4H-3-7+YE-5]
          Length = 1155

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1039 (39%), Positives = 607/1039 (58%), Gaps = 33/1039 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS YS+L+G   +  ++ ++ +   PA+A+TD  N+   ++F ++A A GI+PI
Sbjct: 6    FVHLRVHSDYSMLDGLNKIKPLISQVKSLNMPAVALTDQMNMCGLVKFYEQAHANGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    +          Q       V  + LL +  +GY+ +  L+S+ YL    +    
Sbjct: 66   IGTDFWV----------QSSALEDHVFRLTLLAANNKGYKNITLLISKAYLRGSVQDKAV 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            I   WL E  +EG+I+L+GG  G +       +  +AEK    +++ F DR Y+ L R  
Sbjct: 116  IDQEWLAE-HSEGVIILSGGRMGDLGVYLTKGNVGLAEKATAFYQEHFPDRFYLELTRTA 174

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     + V+ A  H LP+VATN   F+S +++EAH++ +A+     ++   RP+  
Sbjct: 175  RVGEEDYIHRAVEWAGQHNLPVVATNEVCFISPDNFEAHEIRVAIHDGYTLNDPRRPKLY 234

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   Y+++  EM  +F+D+P+A+ENTVEIA+RC+  + +       +   +         
Sbjct: 235  SEQQYMRSSEEMCELFADIPQAIENTVEIAKRCNVSVLLGT-----YFLPDFPTGDMSIA 289

Query: 309  NELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            + L   +  GLE RLA        +     +Y +RL  EL VI +M F GYFLIV +FIQ
Sbjct: 290  DFLVKVSEEGLEKRLAFLFPDEEERLAKRPEYDERLKVELVVINQMGFPGYFLIVMEFIQ 349

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            W+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D
Sbjct: 350  WSKDNGIPVGPGRGSGAGSLVAYALGITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMD 409

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP  P  
Sbjct: 410  RRDEVIDHVAEMYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPTPGM 469

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             ++ +A  ++ R  E    D  V  L+++++ LEG+ R+A  HA G+VI    ++   P+
Sbjct: 470  TLT-KAFEEEPRLPELYAYDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPDKITDFAPL 528

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
            Y D     PVTQF+   +E AGL+KFDFLGL+TLT++Q ++D ++  +G+ +D+  IP D
Sbjct: 529  YCDDEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMISSGKGIDIDILAIPMD 588

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV---- 660
            D +++ LL    T  +FQLES GM+  ++ ++PD  EDIIALV+L+RPGP+ + +V    
Sbjct: 589  DKKSFKLLQRSETTAVFQLESRGMKDLIKRLRPDSFEDIIALVALFRPGPLQSGMVDNFI 648

Query: 661  ---YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
               +             H  +  +L+ T G+I+YQEQVMQIAQ +SGYSL  AD+LRRAM
Sbjct: 649  DRKHGREAISYPDATYQHECLKEILEPTYGIILYQEQVMQIAQEMSGYSLGGADLLRRAM 708

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM KQ+E F +GA  N I   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT 
Sbjct: 709  GKKKPEEMAKQRESFETGAKNNNIDPELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 768

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIY 836
            W+KTHYP EF+AA M+ +MDN +KI     + ++  I ++PP VN     F V  + RI 
Sbjct: 769  WLKTHYPAEFMAAVMSADMDNTDKIVTLVDECQRMGITLLPPDVNAGSYKFTVDSEGRIV 828

Query: 837  YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y + AIKGVG      I+EA  + + F  L DFC++VD+K++N+RVLE LV+AGALD  G
Sbjct: 829  YGIGAIKGVGEGPIAAIIEARENHEKFTDLFDFCAKVDTKRINKRVLEKLVYAGALDNLG 888

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFEN 954
              R  ++ +L      A    K  ++   ++F          +    K       V  + 
Sbjct: 889  PHRASIMATLPEAIAAADQHAKAESHGQSDMFGLLTTEPEQVEQAFVKVPPWPEKVWLDG 948

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  LG Y +GHP++ Y   +R        +   T +        +V+  +    ++G R
Sbjct: 949  EKDTLGLYLTGHPINQYLQEIRHYCTGRLVDLKPTNKDVVSYAVGLVLGVRVMTNKRGRR 1008

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
             G VT  + +   +  FFP
Sbjct: 1009 WGIVTLDDKSARIDVRFFP 1027


>gi|73749142|ref|YP_308381.1| DNA polymerase III, alpha subunit [Dehalococcoides sp. CBDB1]
 gi|289433116|ref|YP_003462989.1| DNA polymerase III subunit alpha [Dehalococcoides sp. GT]
 gi|73660858|emb|CAI83465.1| DNA polymerase III, alpha subunit [Dehalococcoides sp. CBDB1]
 gi|288946836|gb|ADC74533.1| DNA polymerase III, alpha subunit [Dehalococcoides sp. GT]
          Length = 1170

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1038 (36%), Positives = 576/1038 (55%), Gaps = 37/1038 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ +SLL+G   ++ ++ +       A+AITD   +     F ++A  AGI+PI
Sbjct: 2    FCHLHVHTEFSLLDGMCRISQLVVRAKELGMEALAITDHGTMHGIPRFYKEAKEAGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +  +   D    T   K        +VLL    +GY  LI+L SR +L +      R
Sbjct: 62   LGSEFYLAYGDRTAKTAADK----NYYHLVLLAKNNKGYHNLIQLSSRSHL-EGFYYKPR 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L++  +EGL+ L+   SG + R    N    A +  L +KK F +  Y+ +QRH 
Sbjct: 117  IDKELLEKY-SEGLVCLSACPSGEVPRLILENRYDEAREAALWYKKTF-ENYYIEIQRHP 174

Query: 191  GYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     S ++ +A   ++PLVATN++ +L +ED   HD+L+ +  + +VS + R ++ 
Sbjct: 175  MPDLEKINSVLIPMARELDIPLVATNDTHYLDKEDAPYHDLLLCIGTNALVSDEKRMKME 234

Query: 250  PDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             +++  K+  EM   + D+P+A+ENT +IA  C+  L      LP     +     K  +
Sbjct: 235  GEYFYLKSPQEMAEAYQDIPDAIENTAKIAEMCNVSLDFGRLHLPEIDIPKG----KTPD 290

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L +    GL V              +   RL +EL+VI   +F+ YFL+  D I++ K
Sbjct: 291  EYLADLCYEGLPVFYPDAGP-------EILDRLKYELDVIKTTEFANYFLVTWDIIRFVK 343

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  +  G  RGS A S+  Y L IT +DP+R+ L+FERFLN +R  MPD D+DF  DRR+
Sbjct: 344  EKGLYYG-VRGSAASSIVLYCLGITALDPIRYKLVFERFLNIERKEMPDIDMDFQDDRRE 402

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV  KYG + V+QIITFG+L AKAA+RDVGRAL M Y+ VDR+ K+IP  P   + 
Sbjct: 403  EVIEYVVGKYGRDHVSQIITFGTLGAKAAVRDVGRALGMAYADVDRVAKVIPFSPHMTLD 462

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+ + S  +E    D  V  L++ ++K+EGL RHASTHAAG+VI   PL+  VP+ R 
Sbjct: 463  -KAMEESSELKEMYNQDAVVRNLVDAARKVEGLSRHASTHAAGVVISKDPLTDHVPLQRL 521

Query: 549  VRSDLP---VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
             + +     +TQ+ M+ I K GL+K DFLGL  L +L K+   + +     +D   IP D
Sbjct: 522  SKENNLGLVMTQYTMEDIAKIGLLKMDFLGLVNLNILGKACAVIKEYTGQDIDPLAIPLD 581

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T+G+FQLE +GMR+ ++ ++P    DI A+V+LYRPGP++ I  +   
Sbjct: 582  DQKTFELLAAGETVGVFQLEGTGMRRYIKELKPTVFSDIGAMVALYRPGPMEQIPRFIKS 641

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G E I   HP ++P+L+ET GVI+YQEQV+ IAQ  SGY+L +AD+LR+AMGKKI   
Sbjct: 642  KHGLEPITYPHPALEPLLEETYGVIVYQEQVLFIAQTFSGYTLGQADILRKAMGKKIAAV 701

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQK  F+ GA KNG ++ IA  +F L+  FA Y FNK+HA +YA+I+YQTA++K +YP
Sbjct: 702  MQKQKANFVDGAMKNGYTREIADEVFALVEPFAGYAFNKAHATSYALIAYQTAYLKANYP 761

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----NRIYYSL 839
            VE++ A +    D  EK+     +AR   I+++PP +N    +F++        +I + L
Sbjct: 762  VEYITAYLQAFCDVTEKVVTAVTEARHMGIEVLPPDINRSGANFEIEQAEGGVKKIRFGL 821

Query: 840  AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            AAIK VG      I+     +  + S+ED C R +   LN+RV+ESLV AGALD  G  R
Sbjct: 822  AAIKNVGVAAVEPIVAERKANGDYLSVEDLCRRAEGSSLNKRVMESLVKAGALDNMG-DR 880

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKH---ENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              L  +L NI   AQ  +K + +      ++F+ +       + LE+  V  +  + + E
Sbjct: 881  GTLFFNLPNILSLAQREQKMKDSNQTTMFDLFSQQSPVPMTNLELEESPV-TTREKLQWE 939

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            + ++G + S HP   Y     ++      +    +    + +A MV S +   TR+G   
Sbjct: 940  KELVGIFISEHPFTPYASSALEVTTALCGQIDEELHNQLVTVAGMVASVRVSATREGKPF 999

Query: 1016 GWVTFSEPAKEYEANFFP 1033
                  +     E   +P
Sbjct: 1000 VMAEIEDLVGRVEIAAWP 1017


>gi|313682047|ref|YP_004059785.1| DNA polymerase iii, alpha subunit [Sulfuricurvum kujiense DSM 16994]
 gi|313154907|gb|ADR33585.1| DNA polymerase III, alpha subunit [Sulfuricurvum kujiense DSM 16994]
          Length = 1179

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1061 (36%), Positives = 608/1061 (57%), Gaps = 43/1061 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F HL +H+ YSLL+GA  ++ +  ++      ++A++D  N+F A++F Q+   
Sbjct: 1    MSTIPPFTHLHLHTEYSLLDGANKISALAARVKELGMTSVAMSDHGNMFGAIDFYQQMRG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG +  I   ++L     G         + L      GY+ L+ L S+ Y+ + 
Sbjct: 61   AGLKPIIGMEAYIHNGEDL-----GDKTIKQRFHVCLFAKNEAGYKNLMYLSSQAYI-NG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN----------SSQVAEKRLLTF 174
                 RI    L+E  +EG+I  +    G ++     N              A++  L +
Sbjct: 115  FYYFPRINKQLLRE-NSEGIICTSACLQGEVNWHLNTNSERNVKNGALGYDEAKRIALEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++FGD  Y+ + RH   D+   + QV++++    + L+ATN++ +   +D + H+  M 
Sbjct: 174  REIFGDDFYMEIMRHGIADQLFIDEQVIRISQETNIKLIATNDTHYTYADDAQYHEAFMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            +  + +     R R +  + Y+K+  +M  +F+D+PEAL NT EI  +C   L++  P  
Sbjct: 234  IGMNKLYDDPKRMRHSVHEFYIKSPEQMARLFADIPEALYNTQEIVDKCQLELKLGNPTP 293

Query: 293  PRFIEKECDDIQKEEE-----NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
            P F        ++  E         ++   GLE RL            +YR+RL+FE+ V
Sbjct: 294  PNFKFTTEYAREEGLEIAEDSEYFIHRCRIGLEERLIHVPQT---RHTEYRERLEFEMEV 350

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I +MKF GY LIV DF++ AK+  I VGPGRGS AGS+ AYAL ITDIDP+++ LLFERF
Sbjct: 351  INQMKFPGYMLIVWDFVREAKRMGIAVGPGRGSAAGSLVAYALEITDIDPMKYDLLFERF 410

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+SMPD D+DF Q RR E+I YV  KYG E+VAQIITFGSL AK  +RDV R L+M
Sbjct: 411  LNPERVSMPDIDMDFMQARRGEIIDYVVQKYGREQVAQIITFGSLLAKGVIRDVARVLEM 470

Query: 468  PYSQVDRLCKLIPNDPAHPV---------SLQAIADDSRFREARLADPSVDRLLEISQKL 518
            P SQ D + KLIP++    +            A   + + +E    D    R+ E S+KL
Sbjct: 471  PLSQADMMAKLIPDELGITLNGKTKGGEFKPGAFQKEPKIQELIENDAQAMRVWEFSKKL 530

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R+A  HAAG+VI + PL +  P+Y+    +  VTQ+++ ++E   LIKFDFLGLKT
Sbjct: 531  EGLKRNAGMHAAGVVISNEPLWKKTPIYKPSGEETFVTQYSLNYLEDIDLIKFDFLGLKT 590

Query: 579  LTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            L ++  ++  + +R  K  +   I  +D + Y ++ +  T+G+FQ+ESSGM+   + ++P
Sbjct: 591  LDVIDNAIKLIKKRYNKEVNWHTIDENDPKVYEIIQSGDTIGMFQIESSGMQDLNKRLKP 650

Query: 638  DCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
               ED+IA+++LYRPGP+++ +   +  RK+G++ I    P ++P+LK T GVI+YQEQV
Sbjct: 651  SSFEDLIAVLALYRPGPMESGMLDDFIERKHGRQAISYTFPSMEPILKPTYGVIVYQEQV 710

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            MQI Q + G+SL  AD++RRAMGKK  EEM K  + F  GA+  G+    A  +F+L+ K
Sbjct: 711  MQIVQTVGGFSLGGADIVRRAMGKKKIEEMQKYNKEFSEGAANQGLDYKKASELFDLIEK 770

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA YGFNKSH+AAYA++++QTAW+KT+YP EF+AA +T E DN +K+ K+  +A++  I 
Sbjct: 771  FAGYGFNKSHSAAYAMVTFQTAWLKTYYPQEFMAALLTSEKDNTDKVVKYIDEAKRMKIF 830

Query: 816  IMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            +  P +N   ++F        ++I + L AIKGVG      I+EA ++  F  ++DF +R
Sbjct: 831  LGAPDINHSQLEFSAITKDDQDQILFGLGAIKGVGEAAVESILEARSEGEFKDIQDFINR 890

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            ++ +K+N++V+E ++ AG LD FGYSR  LL+ ++ + + A+     + +   ++F  ++
Sbjct: 891  IEPQKVNKKVIECIIKAGGLDHFGYSRRALLEQVETLVETAKKGSSLKKDAQFSLFGDDE 950

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
               + ++ L+     +     + E+  LGFY SGHPLD Y+  +  +      E      
Sbjct: 951  EVTAVELNLKNMDEFDLKTLLDFEKDTLGFYVSGHPLDNYRDQIDAINYTLSSEIENIAD 1010

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            G++      V    +K ++KGS  G V+  +     E   F
Sbjct: 1011 GSSAIFIGKVEEITKKMSKKGSMFGLVSLMDFHGNIEVMLF 1051


>gi|256823112|ref|YP_003147075.1| DNA polymerase III subunit alpha [Kangiella koreensis DSM 16069]
 gi|256796651|gb|ACV27307.1| DNA polymerase III, alpha subunit [Kangiella koreensis DSM 16069]
          Length = 1161

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1042 (39%), Positives = 601/1042 (57%), Gaps = 29/1042 (2%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P F+HL++H+ YS+++  + +  ++      Q PAIA+TD  N+   ++F  ++ +AGI
Sbjct: 2    TPRFIHLKMHTEYSMVDSVVRIKPLIATCKEHQIPAIAMTDQMNMCGLVKFYSQSVSAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G  L I          Q          +  L     GY  L  ++SR YL +Q + 
Sbjct: 62   KPIAGADLLI----------QNPNDEDEHFRVTALCMNNTGYLNLKYVISRAYLKNQHRG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +   WL E   EGLI+L+GG  G + +A    +   A   L  +   F DR Y+ LQ
Sbjct: 112  LPLVKKEWLPEY-AEGLIILSGGRQGDVGKALLAGNMDQAASNLGFWNHHFKDRFYLELQ 170

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R     +     QV+ LA     P+VATN+  F+ +ED++AH+  + +    V++   RP
Sbjct: 171  RTGRPQENEYIHQVIGLAQGASTPVVATNDVRFIDKEDFDAHEARVCINQGRVLADPRRP 230

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  +   YL++  EMV +F D+PEALEN+VEIA+RC+  +++    LP F   E   I +
Sbjct: 231  REYSEQQYLRSEQEMVELFEDIPEALENSVEIAKRCNLEMRLGEYFLPEFPIPEGMTIAQ 290

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E   ++     L+    + A       + Y +RL  EL+VI  M F GYFLIVADFIQ
Sbjct: 291  YFEKVSKDGLEERLDQLFDRNADDFAEIRKAYDERLQIELDVINDMGFPGYFLIVADFIQ 350

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            W+K N +PVGPGRGSGAGS+ AYA+ ITD+DPL + LLFERFLNP+R+SMPDFD+DFC +
Sbjct: 351  WSKNNGVPVGPGRGSGAGSLVAYAMKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCME 410

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV  +YG   V+QIITFG++ AKA +RDVGR    PY  VD+L KLIP +   
Sbjct: 411  GRDRVIDYVAERYGRNSVSQIITFGTMAAKAVIRDVGRVFSHPYGFVDKLAKLIPFEVGM 470

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A   +         D  V  L ++++KLEG+ R+A  HA G+VI    L +  P+
Sbjct: 471  TLE-KAFEQEPELPRLYEEDEDVRELWDLARKLEGVTRNAGKHAGGVVIAPNDLEEFAPL 529

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-----DFLAQRGVKVDLSL 600
            Y D      VTQF+   +E AGL+KFDFLGL+TLT++  ++         +    +D++ 
Sbjct: 530  YCDETGHNIVTQFDKDDVESAGLVKFDFLGLRTLTIIDWAIETANGIIAKKGEEPIDITA 589

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            I  +D + + LL    T  +FQLES GM+  ++ ++P+  EDIIALV+L+RPGP+ + +V
Sbjct: 590  IDTEDQQVFDLLQRADTTAVFQLESRGMKDLIKRLKPNRFEDIIALVALFRPGPLQSGMV 649

Query: 661  -------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                   +             H  +  +L+ T G+I+YQEQVMQIAQ+L+GY+L  AD+L
Sbjct: 650  DNFINRKHGREIVSYPDANYQHESLKEILEPTYGIILYQEQVMQIAQVLAGYTLGGADIL 709

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  EEM+KQ+  F  GA KN +   +A+ IF+L+ KFA YGFNKSH+AAYA+++
Sbjct: 710  RRAMGKKKPEEMEKQRSIFKEGAIKNNVDGDLAMKIFDLVEKFAGYGFNKSHSAAYALVA 769

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GD 832
            YQTAW+KTH+P  F+AA M+ +MDN +K+  + +DA   N+ I PP VN     F V  +
Sbjct: 770  YQTAWLKTHHPAAFMAAVMSSDMDNTDKVVTYVEDAANSNLTITPPDVNKGQYRFSVDEE 829

Query: 833  NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             RI Y + AIKGVG      I+ E  A+ P+  L DFCSRVD KK NRR LE+L+ AGA+
Sbjct: 830  GRIVYGIGAIKGVGEGAIESIVNEREANGPYKDLFDFCSRVDLKKANRRTLEALIRAGAM 889

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSV 950
            D  G +R  L+ SLD   K A+   K++    +++F      T +++    +        
Sbjct: 890  DLIGPNRATLMASLDEAVKAAEQFNKSQAAGQDDLFGSVVATTATEQHQYIRVKPWTDEQ 949

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
              + E+  LG Y +GHP+D Y P +++M I        T RGN+ R+  ++V  +   T+
Sbjct: 950  VLQGEKETLGLYLTGHPIDRYIPEIKQMSITRLRNLQPTGRGNSARVVGLIVGMRVMNTK 1009

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G ++  +T  + +   +   +
Sbjct: 1010 RGDKMAILTLDDKSGRCDVTVY 1031


>gi|91977328|ref|YP_569987.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris BisB5]
 gi|91683784|gb|ABE40086.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisB5]
          Length = 1151

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 522/1036 (50%), Positives = 706/1036 (68%), Gaps = 15/1036 (1%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL VHS+YSLL+G++ +  + +   AD QPA+A+TDT+N+F ALEFS K   
Sbjct: 1    MSNA-GFVHLHVHSAYSLLKGSMKIARLAELAKADHQPALALTDTDNMFGALEFSDKLAG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GIQPI+G +L ID  D    +       P+   IVLL +   GY+ L+ L SR +L   
Sbjct: 60   SGIQPIVGLELGIDFGDQDPNSRNTAVAAPS--RIVLLATRERGYRSLMRLNSRAFLETP 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              Q   I   WL +  TE +I LTGG  GPI  A       +   R     + FGDRLYV
Sbjct: 118  VNQPPHIKFDWL-DGETEDVIALTGGPDGPISLAMLT-DPALGRLRCERLAQAFGDRLYV 175

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   ++R  E+ ++ +AY   LPLVATN   F + +D+EAHD L+ +A   ++++ 
Sbjct: 176  ELQRHNTDFERRAEAGLIDVAYDMGLPLVATNEPHFATSDDFEAHDALLCIASGKLIAET 235

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP----ILPRFIEKE 299
            DR ++TPDH  K R+EM  +F+DLPEAL +TVEIA+RC++      P            +
Sbjct: 236  DRVQLTPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGASVND 295

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             ++    E  ELR +A  GL  R+    +++G   +DYR+RL FEL+VI RMK++GYFLI
Sbjct: 296  AEEAAAAEAAELRRQAEQGLADRMRIHGLSQGMSEEDYRKRLAFELDVITRMKYAGYFLI 355

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V+DFI+WAK + IPVGPGRGSGAGS+ AY+LTITD+DP+RF LLFERFLNP+R+SMPDFD
Sbjct: 356  VSDFIKWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFD 415

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQDRR EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+
Sbjct: 416  IDFCQDRRGEVIEYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLV 475

Query: 480  PNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P +PA PVS  QAI  + + +  R  DP V R  +I+QKLEGL RHASTHAAGIVIGDRP
Sbjct: 476  PQNPAAPVSLKQAIESEPKLQAFRDEDPVVARAFDIAQKLEGLTRHASTHAAGIVIGDRP 535

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            LS LVPMYRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L QR + +DL
Sbjct: 536  LSDLVPMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRNIHIDL 595

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +  +D  +Y +L     +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPGP+ NI
Sbjct: 596  ATLGIEDAPSYQMLARGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANI 655

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  RK+G E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL EAD+LRRAMG
Sbjct: 656  PTYCARKHGDEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMG 715

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KKI+ EM+KQ+  F+ GA++NG+ K  A  IF+LLAKFADYGFNKSHAAAYA++SY TA+
Sbjct: 716  KKIRAEMEKQRAIFVEGATRNGVPKDAADTIFDLLAKFADYGFNKSHAAAYALVSYHTAY 775

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            MK HYPVEF+AASMTL+++N +K+ +F  +A++  I++  PSVN     F+VG+N IYY+
Sbjct: 776  MKAHYPVEFIAASMTLDLNNTDKLSEFRAEAQRLGIKVEAPSVNRSGPTFEVGENTIYYA 835

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            LA +KGVG    + I+EA  DKPF SL DF +RV+ + +N+RV+ESL  AGA DC   +R
Sbjct: 836  LAGLKGVGQHAVQMIVEARGDKPFSSLADFAARVNPRAINKRVIESLAAAGAFDCLDPNR 895

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             ++    D I    Q   +  T+   ++F       +  I L +      + R   E   
Sbjct: 896  ARVFAGADAIIAACQRSHEAATSGQNDMFGGLAD--APSIVLPQVEPWLPAERLRREYDA 953

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIG 1016
            +GF+ SGHPLD Y   L+++ ++ + +   A   G    ++AA VVS+ +++T+ G+++G
Sbjct: 954  IGFFLSGHPLDDYATALKRLRVQSWSDFCKAVKSGATAGKVAATVVSRMERRTKTGNKMG 1013

Query: 1017 WVTFSEPAKEYEANFF 1032
             +  S+P   +EA  F
Sbjct: 1014 IMGLSDPTGHFEAVLF 1029


>gi|257413195|ref|ZP_04742281.2| DNA polymerase III, alpha subunit [Roseburia intestinalis L1-82]
 gi|257204357|gb|EEV02642.1| DNA polymerase III, alpha subunit [Roseburia intestinalis L1-82]
          Length = 1162

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/1054 (34%), Positives = 579/1054 (54%), Gaps = 44/1054 (4%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            Q +    SF HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F + A
Sbjct: 5    QSM----SFTHLHVHTEYSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYKAA 60

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
             AAGI+P++GC++ +                     +VLL    +GYQ L+++VS+ + +
Sbjct: 61   RAAGIKPVLGCEVYVAPGSRFDRELSHG--DDRYYHLVLLAENNQGYQNLMKIVSKGF-V 117

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181
            +      R+ +  L+    EG+I L+   +G + R       + A++    ++K FG   
Sbjct: 118  EGYYYKPRVDMEVLETYH-EGIIALSACLAGEVQRYLVRGLYEEAKETACKYEKCFGKGN 176

Query: 182  LYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             ++ LQ H   D+    + +++++    + LVATN+  +   ED E HD+L+ +     +
Sbjct: 177  FFLELQDHGIPDQKTVNAGLMRMSEETGIELVATNDVHYTYAEDAEPHDILLCLQTGKKL 236

Query: 241  SQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            S ++R R     +++K+  EM ++F    +A++NT +IA RC+  ++     LP F   E
Sbjct: 237  SDENRMRYEGGQYFVKSEEEMRALFPYAAQAIDNTQKIADRCNVEIEFGVTKLPHFDVPE 296

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              D        L      GL  R            ++   +LD+EL+VI +M +  YFLI
Sbjct: 297  GYD----SWTYLNKLCHEGLVRRYPD-------KHEELLPKLDYELSVIQKMGYVDYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI +A+ + IPVGPGRGS AGS+ +Y   IT+IDP+R++LLFERFLNP+R++MPD D
Sbjct: 346  VWDFINYARTHGIPVGPGRGSAAGSLVSYTTGITNIDPIRYNLLFERFLNPERVTMPDID 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC +RR EVI YV  KYG + V QI+TFG+L A+  +RDVGR + +PY+  D + K I
Sbjct: 406  IDFCYERRSEVIDYVIEKYGKDCVTQIVTFGTLAARGVIRDVGRVMDLPYNFCDTIAKNI 465

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            PN+    +    I  +   R    +D +V RL++++++LEGL RH S HAAG+VI  + +
Sbjct: 466  PNELNITIDKALI-MNPELRSMYESDETVKRLIDMAKRLEGLPRHTSMHAAGVVISQKAM 524

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDL 598
             + VP+ R        TQF M  IE+ GL+K DFLGL+TLT++  ++       G+K+D+
Sbjct: 525  DEYVPLSRSS-DGTITTQFVMTTIEELGLLKMDFLGLRTLTVISDAVKLVEKNHGIKIDV 583

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              I +DD +    + T    G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I
Sbjct: 584  DNIDYDDKKVLDSIGTGRCDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFI 643

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y   KN  E +  +   ++P+L+ T G I+YQEQVMQI Q L+GY++ +AD +RRAM 
Sbjct: 644  PKYIKGKNEPESVTYVCKELEPILEPTYGCIVYQEQVMQIVQNLAGYTMGQADNIRRAMS 703

Query: 719  KKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            KK +  +D +++ F+         G   NGIS+  A  I++ +  FA Y FNKSHAAAYA
Sbjct: 704  KKKQYVIDAERQNFVYGNEEQGIKGCIANGISEQAANQIYDSMVDFAKYAFNKSHAAAYA 763

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            V++YQTA++K +YPVEF+AA MT  +DN  K+ ++    RQ  I+++ P +N     F  
Sbjct: 764  VVAYQTAYLKYYYPVEFMAALMTSVVDNTRKVAEYIYSCRQMGIKVLSPDINEGEGRFLA 823

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              + I Y + AIK +G      I+    A+  + +L DF SRV  +++N+R +E+L+ AG
Sbjct: 824  TKDGIRYGMYAIKSIGRQVIDIILAEREANGKYTTLSDFLSRVAGREVNKRAVENLIKAG 883

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVEN 947
            A D    +R Q+L   + +       +KN      ++F    E+   + ++         
Sbjct: 884  ACDGLDGNRQQMLLVYNTLIDNLNQEKKNSLAGQMSLFDLFSEEEKKAYEVRFPNVEEYT 943

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAA 999
              ++   E+ VLG Y SGHPL+ Y+   RK       + +              ++ +  
Sbjct: 944  KEIKLGFEKEVLGIYLSGHPLEEYEEKWRKNISAVTADFMLDEETNAVKIKDNQSVVIGG 1003

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            ++  K  K T++   + ++T  +     E   FP
Sbjct: 1004 IITEKTIKYTKQNKAMAFITVEDLFGTVEVIIFP 1037


>gi|317493173|ref|ZP_07951596.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918833|gb|EFV40169.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 1160

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1049 (39%), Positives = 609/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL+VHS YS+++G   +  ++ K+AA   PA AITD  N+   ++F   A  
Sbjct: 1    MAE-PRFIHLRVHSDYSMIDGLAKVGPLVKKVAALGMPAFAITDHTNMCGLVKFYGSAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG  + +          + +     +  + +L +   GYQ L  L+S  Y    
Sbjct: 60   AGIKPIIGADVFV----------KSELLGDELSHLTILAANNTGYQNLTLLISHAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E   EGLI+L+GG  G + +     + Q+A + +  +++ F D  Y+
Sbjct: 110  GADGPVIDRDWLVEY-REGLILLSGGRQGDVGKMLLRGNQQLAHECVDFYQQYFADSYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA   ELP+VATN+  FL   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEESYLHFAVALAEERELPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   Y+++  EM  +F+D+PEALEN+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPKNYSAQQYMRSEEEMCELFADIPEALENSVEIAKRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GEMSTEDFLVAKSKEGLEERLEFLFPDPEVRAKRRPEYDERLDVELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDRVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPEPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R       
Sbjct: 523  TDFAPLYCDSEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKAGED 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA + GI   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFKEGAERMGIDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGQYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I++A      F  L D C+R D+KKLNRR+LE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIDARNEGGHFKELFDLCARTDTKKLNRRMLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL++  K A    K       ++F    +     + +    +
Sbjct: 883  IMSGAFDRLGPHRAALMNSLNDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEKSYSSVA 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
               + V  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +VV+
Sbjct: 943  PWPAQVVLDGERETLGLYLTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMTTKRGNRIGVCTLDDRSGRLEVMLF 1031


>gi|147669904|ref|YP_001214722.1| DNA polymerase III catalytic subunit, DnaE type [Dehalococcoides sp.
            BAV1]
 gi|146270852|gb|ABQ17844.1| DNA polymerase III catalytic subunit, DnaE type [Dehalococcoides sp.
            BAV1]
          Length = 1170

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1038 (36%), Positives = 576/1038 (55%), Gaps = 37/1038 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ +SLL+G   ++ ++ +       A+AITD   +     F ++A  AGI+PI
Sbjct: 2    FCHLHVHTEFSLLDGMCRISQLVVRAKELGMEALAITDHGTMHGIPRFYKEAKEAGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +  +   D    T   K        +VLL    +GY  LI+L SR +L +      R
Sbjct: 62   LGSEFYLAYGDRTAKTAADK----NYYHLVLLAKNNKGYHNLIQLSSRSHL-EGFYYKPR 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L++  +EGL+ L+   SG + R    N    A +  L +KK F +  Y+ +QRH 
Sbjct: 117  IDKELLEKY-SEGLVCLSACPSGEVPRLILENRYDEAREAALWYKKTF-ENYYIEIQRHP 174

Query: 191  GYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D     S ++ +A   ++PLVATN++ +L +ED   HD+L+ +  + +VS + R ++ 
Sbjct: 175  MPDLEKINSVLIPMARELDIPLVATNDTHYLDKEDAPYHDLLLCIGTNALVSDEKRMKME 234

Query: 250  PDHYL-KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             +++  K+  EM   + D+P+A+ENT +IA  C+  L      LP     +     K  +
Sbjct: 235  GEYFYLKSPQEMAEAYQDIPDAIENTAKIAEMCNVSLDFGRLHLPEIDIPKG----KTPD 290

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L +    GL V              +   RL +EL+VI   +F+ YFL+  D I++ K
Sbjct: 291  EYLADLCYEGLPVFYPDAGP-------EILDRLKYELDVIKTTEFANYFLVTWDIIRFVK 343

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  +  G  RGS A S+  Y L IT +DP+++ L+FERFLN +R  MPD D+DF  DRR+
Sbjct: 344  EKGLYYG-VRGSAASSIVLYCLGITALDPIKYKLVFERFLNIERKEMPDIDMDFQDDRRE 402

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV  KYG + V+QIITFG+L AKAA+RDVGRAL M Y+ VDR+ K+IP  P   + 
Sbjct: 403  EVIEYVVGKYGRDHVSQIITFGTLGAKAAVRDVGRALGMAYADVDRVAKVIPFSPHMTLD 462

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+ + S  +E    D  V  L++ ++K+EGL RHASTHAAG+VI   PL+  VP+ R 
Sbjct: 463  -KAMEESSELKEMYNQDAVVRNLVDAARKVEGLSRHASTHAAGVVISKDPLTDHVPLQRL 521

Query: 549  VRSDLP---VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
             + +     +TQ+ M+ I K GL+K DFLGL  L +L K+   + +     +D   IP D
Sbjct: 522  SKENNLGLVMTQYTMEDIAKIGLLKMDFLGLVNLNILGKACAVIKEYTGQDIDPLAIPLD 581

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T+ LL    T+G+FQLE +GMR+ ++ ++P    DI A+V+LYRPGP++ I  +   
Sbjct: 582  DQKTFELLAAGETVGVFQLEGTGMRRYIKELKPTVFSDIGAMVALYRPGPMEQIPRFIKS 641

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G E I   HP ++P+L+ET GVI+YQEQV+ IAQ  SGY+L +AD+LR+AMGKKI   
Sbjct: 642  KHGLEPITYPHPALEPLLEETYGVIVYQEQVLFIAQTFSGYTLGQADILRKAMGKKIAAV 701

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQK  F+ GA KNG ++ IA  +F L+  FA Y FNK+HA +YA+I+YQTA++K +YP
Sbjct: 702  MQKQKANFVDGAMKNGYTREIADEVFALVEPFAGYAFNKAHATSYALIAYQTAYLKANYP 761

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----NRIYYSL 839
            VE++ A +    D  EK+     +AR   I+++PP +N    +F++        +I + L
Sbjct: 762  VEYITAYLQAFCDVTEKVVTAVTEARHMGIEVLPPDINRSGANFEIEQAEGGVKKIRFGL 821

Query: 840  AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            AAIK VG      I+     +  + S+ED C R +   LN+RV+ESLV AGALD  G  R
Sbjct: 822  AAIKNVGVAAVEPIVAERKANGDYLSVEDLCRRAEGSSLNKRVMESLVKAGALDNMG-DR 880

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKH---ENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              L  +L NI   AQ  +K + +      ++F+ +       + LE+  V  +  + + E
Sbjct: 881  GTLFFNLPNILSLAQREQKMKDSNQTTMFDLFSQQSPVPMTNLELEESPV-TTREKLQWE 939

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            + ++G + S HP   Y     ++      +    +    + +A MV S +   TR+G   
Sbjct: 940  KELVGIFISEHPFTPYASSALEVTTALCGQIDEELHNQLVTVAGMVASVRVSATREGKPF 999

Query: 1016 GWVTFSEPAKEYEANFFP 1033
                  +     E   +P
Sbjct: 1000 VMAEIEDLVGRVEIAAWP 1017


>gi|330445160|ref|ZP_08308812.1| DNA polymerase III, &alpha subunit [Photobacterium leiognathi subsp.
            mandapamensis svers.1.1.]
 gi|328489351|dbj|GAA03309.1| DNA polymerase III, &alpha subunit [Photobacterium leiognathi subsp.
            mandapamensis svers.1.1.]
          Length = 1159

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1048 (38%), Positives = 614/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL+VHS +S+++G   +  I+ K +    PA+AITD  NL   ++F   A  
Sbjct: 1    MAE-PRFIHLRVHSDFSMIDGLAKVKPIVKKASDLGMPALAITDFTNLCGLVKFYFAAHD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG    +          Q       +  + +L +  EGY+ L  L+S  Y    
Sbjct: 60   AGMKPIIGADFKV----------QSAEMGDELFELTILAANNEGYKNLTLLISEAYQRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I   WL     EGLI+L+GG +G + +A    + ++ +  +  +K  F D  Y+
Sbjct: 110  VQHLPVIDKEWLIN-HREGLIVLSGGKNGDVGKALLKGNQKMVDSFISFYKTHFPDSYYL 168

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     +       V+LA   +LP+VATN+   L+ + ++AH++ +A+     +   
Sbjct: 169  ELVRTGRADEEAYLHFAVELAEKEDLPVVATNDVRLLTADQFDAHEIRVAIHDGYTLVDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +RP+  +   YL++  EM  +F+D+PEAL+N+VEIA+RC+  +++       +       
Sbjct: 229  NRPKLYSAQQYLRSEEEMCELFADIPEALQNSVEIAKRCNVTVRLGE-----YFLPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RLD EL V+ +M F GYFLI
Sbjct: 284  GDMSIEDFLVMKSKEGLEERLEFLFPDPEVRAARRPEYDERLDVELQVVNQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC D+RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  IDFCMDKRDLVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   + +  ++  AD  V  L+++ + LEG+ R+A  HA G+VI    +
Sbjct: 464  PAEPGMTL-AKAFEAEPQLGQSYDADEEVRDLIDMCRILEGVTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPLYCDAEGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLIEQGKE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V+++ I  DD +++ +L    +  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PVNIAAIAMDDPKSFAMLQRSESTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E +        H  +  +L  T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAVSYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRAVFEEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +KI     +  + N++++PP VN     
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKIISLVDECHRMNLKLLPPDVNKGLYR 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   + Y + A+KGVG     +I+ A      F  L DFC+R+D+KK+N+RVLE L
Sbjct: 823  FNVDDEGAVVYGIGAVKGVGEGPIENIISAREKGGHFKDLFDFCARIDTKKVNKRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA+D  G +R  +L +LD+  K A    +       ++F        + +       
Sbjct: 883  IKSGAMDRLGPNRAAMLATLDDAIKAASQHHQAEAFGQTDMFGVLTAAPEEVEHKYANIP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y P L+       +++  T R     +A +V++ 
Sbjct: 943  ESPDKVWLEGERETLGLYLTGHPINAYIPELKHYTTWRLKDAQQTGRDKVATVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|291537379|emb|CBL10491.1| DNA polymerase III catalytic subunit, DnaE type [Roseburia
            intestinalis M50/1]
          Length = 1156

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/1047 (34%), Positives = 577/1047 (55%), Gaps = 40/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +   + ++      + AITD   ++  ++F + A AAGI+P
Sbjct: 2    SFTHLHVHTEYSLLDGSNKIKEYVSRVKELGMNSAAITDHGVMYGVIDFYKAARAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +                     +VLL    +GYQ L+++VS+ + ++      
Sbjct: 62   ILGCEVYVAPGSRFDRELSHG--DDRYYHLVLLAENNQGYQNLMKIVSKGF-VEGYYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+ +  L+    EG+I L+   +G + R       + A++    ++K FG    ++ LQ 
Sbjct: 119  RVDMEVLETYH-EGIIALSACLAGEVQRYLVRGLYEEAKETACKYEKCFGKGNFFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++    + +++++    + LVATN+  +   ED E HD+L+ +     +S ++R R
Sbjct: 178  HGIPEQKTVNAGLMRMSQETGIELVATNDVHYTYAEDAEPHDILLCLQTGKKLSDENRMR 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +++K+  EM ++F    +A+ENT +IA RC+  ++     LP F   E  D    
Sbjct: 238  YEGGQYFVKSEEEMRALFPYAAQAIENTQKIADRCNVEIEFGVTKLPHFDVPEGYD---- 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GL  R            ++   +LD+EL+VI +M +  YFLIV DFI +
Sbjct: 294  SWTYLNKLCHEGLVRRYPD-------KHEELLPKLDYELSVIQKMGYVDYFLIVWDFINY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ + IPVGPGRGS AGS+ +Y   IT+IDP+R++LLFERFLNP+R++MPD DIDFC +R
Sbjct: 347  ARTHGIPVGPGRGSAAGSLVSYTTGITNIDPIRYNLLFERFLNPERVTMPDIDIDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG + V QI+TFG+L A+  +RDVGR + +PY+  D + K IPN+    
Sbjct: 407  RSEVIDYVIEKYGKDCVTQIVTFGTLAARGVIRDVGRVMDLPYNFCDTIAKNIPNELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +    I  +   R    +D +V RL++++++LEGL RH S HAAG+VI  + + + VP+ 
Sbjct: 467  IDKALI-MNPELRSMYESDETVKRLIDMAKRLEGLPRHTSMHAAGVVISQKAMDEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDD 605
            R        TQF M  IE+ GL+K DFLGL+TLT++  ++       G+K+D+  I ++D
Sbjct: 526  RSS-DGTITTQFVMTTIEELGLLKMDFLGLRTLTVISDAVKLVEKNHGIKIDVDNIDYND 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +    + T    G+FQLES+GM+  ++ ++P  +ED+IA +SLYRPGP+D I  Y   K
Sbjct: 585  KKVLDSIGTGRCDGVFQLESAGMKNFMKELKPQSLEDVIAGISLYRPGPMDFIPKYIKGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E +  +   ++P+L+ T G I+YQEQVMQI Q L+GY++ +AD +RRAM KK +  +
Sbjct: 645  NEPESVTYVCKELEPILEPTYGCIVYQEQVMQIVQNLAGYTMGQADNIRRAMSKKKQYVI 704

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            D +++ F+         G   NGIS+  A  I++ +  FA Y FNKSHAAAYAV++YQTA
Sbjct: 705  DAERQNFVYGNEEQGIKGCIANGISEQAANQIYDSMVDFAKYAFNKSHAAAYAVVAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YPVEF+AA MT  +DN  K+ ++    RQ  I+++ P +N     F    + I Y
Sbjct: 765  YLKYYYPVEFMAALMTSVIDNTRKVAEYIYSCRQMGIKVLSPDINEGEGRFLATKDGIRY 824

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             + AIK +G      I+    A+  + +L DF SRV  +++N+R +E+L+ AGA D    
Sbjct: 825  GMYAIKSIGRQVIDIILAEREANGKYITLSDFLSRVAGREVNKRAVENLIKAGACDGLDG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFEN 954
            +R Q+L   + +       +KN      ++F    E+   + ++           ++   
Sbjct: 885  NRQQMLLVYNTLIDNLNQEKKNSLAGQMSLFDLVSEEEKKAYEVRFPNVEEYTKEIKLGF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQQ 1006
            E+ VLG Y SGHPL+ Y+   RK       + +              ++ +  ++  K  
Sbjct: 945  EKEVLGIYLSGHPLEEYEEKWRKNISAVTADFMLDEETNAVKIKDNQSVVIGGIITEKTI 1004

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K T++   + ++T  +     E   FP
Sbjct: 1005 KYTKQNKAMAFITVEDLFGTVEVIIFP 1031


>gi|15598836|ref|NP_252330.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa PAO1]
 gi|116051637|ref|YP_789524.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218890135|ref|YP_002438999.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa LESB58]
 gi|254242338|ref|ZP_04935660.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa 2192]
 gi|296387855|ref|ZP_06877330.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa PAb1]
 gi|14194674|sp|Q9HXZ1|DPO3A_PSEAE RecName: Full=DNA polymerase III subunit alpha
 gi|9949800|gb|AAG07028.1|AE004784_1 DNA polymerase III, alpha chain [Pseudomonas aeruginosa PAO1]
 gi|13992731|gb|AAG16710.2| DNA polymerase III [Pseudomonas aeruginosa]
 gi|115586858|gb|ABJ12873.1| DNA polymerase III, alpha subunit [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126195716|gb|EAZ59779.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa 2192]
 gi|218770358|emb|CAW26123.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa LESB58]
          Length = 1173

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1060 (39%), Positives = 612/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ +SL++G + +  +   +A    PA+A+TD +N+ S ++F + A  AGI+P
Sbjct: 4    SFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  + +            +     +  + LL   A+GY+ L EL+SR +   Q    +
Sbjct: 64   ICGADIWLA----------SREEDGPLSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   W++E   EGLI L+    G I  A        AE  L  + ++F +R YV +QR 
Sbjct: 114  IIERDWVKE-AAEGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRT 172

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R  D       V LA     PLVATN+  F+ +ED+EAH+  + +     +    RPR 
Sbjct: 173  SRVNDEEHLHAAVALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPRRPRT 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+ +EM  +FSDLPEALENTVEIA+RC+  +Q+    LP F       I    
Sbjct: 233  YSDQQYLKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGI---- 288

Query: 308  ENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++ LR+ +  GLE RL     +         Q Y  RL+FEL++I +M F GYFLIV DF
Sbjct: 289  DDYLRHASFEGLEERLEVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDF 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 349  IKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + RD VI YV + YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP + 
Sbjct: 409  MEGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 468

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +   R+   +D     + E++ KLEG+ R    HA G+VI    L+   
Sbjct: 469  GMTLD-KAYEQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFS 527

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ + +         V++
Sbjct: 528  PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVNI 587

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + 
Sbjct: 588  DFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 647

Query: 659  V--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + NRK+G+ ++   HP      ++P+LK T G+I+YQEQVMQIAQ+++GY+L  AD
Sbjct: 648  MVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGAD 707

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  FI G   NGI   +A NIF+L+ KFA YGFNKSH+AAY +
Sbjct: 708  MLRRAMGKKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 767

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQTAW+KTH+P  F+AA +T +M N +K+    ++ R   ++I+ P VN     F V 
Sbjct: 768  VSYQTAWLKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTVD 827

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D RI Y L AIKGVG      I E  A+  PF++L DFC RVD K++N+R LE+L+ AG
Sbjct: 828  DDGRIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            ALD  G                +R  LL +++   + A+   ++  + H ++F       
Sbjct: 888  ALDRLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEP 947

Query: 935  SDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               +     K        R + E+  LG Y +GHP+D Y+  +R+   +   E       
Sbjct: 948  EADVYANHRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++V+ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1008 Q--TVAGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLF 1045


>gi|114707392|ref|ZP_01440289.1| DNA polymerase III subunit alpha [Fulvimarina pelagi HTCC2506]
 gi|114537273|gb|EAU40400.1| DNA polymerase III subunit alpha [Fulvimarina pelagi HTCC2506]
          Length = 1151

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 578/1029 (56%), Positives = 748/1029 (72%), Gaps = 11/1029 (1%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF+HL+ HS++SLLEGAL L+ I+    AD  PA+ I DTNNLF ALEFS+KA  +G+QP
Sbjct: 9    SFIHLRSHSAFSLLEGALKLDQIIKFALADGAPAVGIADTNNLFGALEFSEKAAKSGLQP 68

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGCQLD+D +D     N  +    +   +VL+ S+  GY  L+E+VS+ YL  +     
Sbjct: 69   IIGCQLDVDFEDG---ENDREKAALSPAPVVLIASSDIGYANLVEIVSKAYLGHEANVRP 125

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +  SWL ++  EG+I LTGG SGPI  A       +AE RL   K  +GDRLYV LQR 
Sbjct: 126  HVKASWLDDL-AEGVIALTGGPSGPIGLAIAAERRPIAEARLDRLKTAYGDRLYVELQRQ 184

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             GY R  E+  ++LAY   LP+VATN   F   EDY+AHD L+AVA + +VS +DR R++
Sbjct: 185  HGYSRRLEAGTLELAYGCNLPIVATNEPYFYCAEDYDAHDALLAVASNRLVSHEDRRRLS 244

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             DH LKN++EM  +F+DLPEALENT+EIARRC+F  +V  PILPRF   + D    E   
Sbjct: 245  RDHCLKNQNEMAELFADLPEALENTIEIARRCNFRPKVRQPILPRFAGADADPADAERAE 304

Query: 310  --ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              ELR +A  GL+ R+ +  IA G+  ++YR+RLDFEL +I RM+F GYFLIVADFI+WA
Sbjct: 305  VAELRRQAFEGLDRRMEKLGIADGHTVEEYRERLDFELTIIERMQFPGYFLIVADFIKWA 364

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K + IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNP+R+SMPDFDIDFCQDRR
Sbjct: 365  KDHGIPVGPGRGSGAGSLVAYALTITDLDPLRFSLLFERFLNPERVSMPDFDIDFCQDRR 424

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVIRYVQ KYG E+V QIITFG+LQA+A LRDVGR L+M Y  VD+LCKL+P +PA+PV
Sbjct: 425  EEVIRYVQEKYGREQVGQIITFGTLQARAVLRDVGRVLEMSYGHVDKLCKLVPANPANPV 484

Query: 488  S-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  QA+ ++ R +EAR  +  VDRL+ IS KLEGLYRHASTHAAGIVIGDRPL +LVPMY
Sbjct: 485  TLAQALEEEPRLKEAREKEEIVDRLISISLKLEGLYRHASTHAAGIVIGDRPLQKLVPMY 544

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
            RD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT LQ ++ ++   +  K+DLS IP DD
Sbjct: 545  RDPRSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLQTAVSYVELNKQTKIDLSAIPLDD 604

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              TY +LT   T+G+FQLES GMR+AL GM+PD  EDIIALV+LYRPGP++NI  YN RK
Sbjct: 605  KPTYDMLTRGETVGVFQLESVGMRKALIGMRPDVFEDIIALVALYRPGPMENIPTYNARK 664

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G+E+   IH  I P+LKETQGVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI+ EM
Sbjct: 665  HGEEEPDFIHEKIAPILKETQGVIIYQEQVMQIAQVLSGYSLGEADMLRRAMGKKIRAEM 724

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            DKQ+ RF+ GA + GI K  A  IF+LLAKFA+YGFNKSHAAAYA+++YQTA++K +YP 
Sbjct: 725  DKQRVRFVDGAVERGIQKKQADMIFDLLAKFANYGFNKSHAAAYALVAYQTAYLKANYPA 784

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EFLAASMTL+  N EK+ +F  DAR+  I+++PPSV T    F+V  N+I+Y+LAAIKGV
Sbjct: 785  EFLAASMTLDAGNTEKLNEFRLDARRLGIEVVPPSVQTSFRKFEVSGNKIFYALAAIKGV 844

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G     HI+E   DKPF SLEDFC RVD K +N+R  E L+ AGA DCFG+ R  L+ ++
Sbjct: 845  GEHAVDHIVEKRGDKPFKSLEDFCGRVDPKIINKRTFEFLIAAGAFDCFGHERAVLMSNV 904

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            + +  YA  + ++RT+   +IF     +  + + L    +  +S +   E + +GF+ S 
Sbjct: 905  ERMMGYAARIAESRTSGQADIFGAFS-SEPEPLRLGPAPLWTASEKLLREFQAIGFHLSA 963

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            HPLD Y+  L+++ ++ + ++VA ++   + +RLA  V S+Q++KTR G +IG +  S+ 
Sbjct: 964  HPLDEYRSTLKRLRVQSHADAVAAVKRGASAVRLAGTVTSRQERKTRSGGKIGIIQMSDA 1023

Query: 1024 AKEYEANFF 1032
            + +YE   F
Sbjct: 1024 SAQYEVVLF 1032


>gi|254236554|ref|ZP_04929877.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa C3719]
 gi|126168485|gb|EAZ53996.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa C3719]
          Length = 1173

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1060 (39%), Positives = 612/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ +SL++G + +  +   +A    PA+A+TD +N+ S ++F + A  AGI+P
Sbjct: 4    SFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  + +            +     +  + LL   A+GY+ L EL+SR +   Q    +
Sbjct: 64   ICGADIWLA----------SREEDGPLSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   W++E   EGLI L+    G I  A        AE  L  + ++F +R YV +QR 
Sbjct: 114  IIERDWVKE-AAEGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRT 172

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R  D       V LA     PLVATN+  F+ ++D+EAH+  + +     +    RPR 
Sbjct: 173  SRVNDEEHLHAAVALASRCNAPLVATNDVRFIKQDDFEAHETRVCIGEGRTLDDPRRPRT 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+ +EM  +FSDLPEALENTVEIA+RC+  +Q+    LP F       I    
Sbjct: 233  YSDQQYLKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGI---- 288

Query: 308  ENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++ LR+ +  GLE RL     +         Q Y  RL+FEL++I +M F GYFLIV DF
Sbjct: 289  DDYLRHASFEGLEERLEVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDF 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 349  IKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + RD VI YV + YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP + 
Sbjct: 409  MEGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 468

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +   R+   +D     + E++ KLEG+ R    HA G+VI    L+   
Sbjct: 469  GMTLD-KAYEQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFS 527

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ + +         V++
Sbjct: 528  PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVNI 587

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + 
Sbjct: 588  DFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 647

Query: 659  V--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + NRK+G+ ++   HP      ++P+LK T G+I+YQEQVMQIAQ+++GY+L  AD
Sbjct: 648  MVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGAD 707

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  FI G   NGI   +A NIF+L+ KFA YGFNKSH+AAY +
Sbjct: 708  MLRRAMGKKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 767

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQTAW+KTH+P  F+AA +T +M N +K+    ++ R   ++I+ P VN     F V 
Sbjct: 768  VSYQTAWLKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTVD 827

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D RI Y L AIKGVG      I E  A+  PF++L DFC RVD K++N+R LE+L+ AG
Sbjct: 828  DDGRIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            ALD  G                +R  LL +++   + A+   ++  + H ++F       
Sbjct: 888  ALDRLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEP 947

Query: 935  SDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               +     K        R + E+  LG Y +GHP+D Y+  +R+   +   E       
Sbjct: 948  EADVYANHRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++V+ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1008 Q--TVAGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLF 1045


>gi|39935989|ref|NP_948265.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris CGA009]
 gi|39649843|emb|CAE28365.1| DNA polymerase III alpha subunit [Rhodopseudomonas palustris CGA009]
          Length = 1151

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 529/1036 (51%), Positives = 705/1036 (68%), Gaps = 15/1036 (1%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL VHS+YSLL+G++ +  + +   AD+QPA+A+TDT+N+F  LEFS K   
Sbjct: 1    MSNA-GFVHLHVHSAYSLLKGSMKIAKLAELAKADRQPALALTDTDNMFGGLEFSDKLSG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GIQPI+G +L ID  D    +  G    P    IVLL +  +GY+ L+ L SR +L   
Sbjct: 60   YGIQPIVGLELGIDFGDQDPNSRHGALATPA--RIVLLAAREQGYRSLMRLNSRAFLETP 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              Q   + L WL E  T+G++ LTGG  GPI  A       +A +R    ++ FGDRLYV
Sbjct: 118  VNQVPHVKLEWL-EGETDGVVALTGGPDGPISLAMLT-DPALAAQRCERLQQAFGDRLYV 175

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH    +R  E  ++ LAY   LPLVATN   F S EDYEAHD L+ +A   ++++ 
Sbjct: 176  ELQRHGTEAERRAEGGLIDLAYDKGLPLVATNEPHFASTEDYEAHDALLCIASGKLIAET 235

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP----ILPRFIEKE 299
            DR + TPDH  K R+EM  +F+DLPEAL +TVEIA+RC++      P            +
Sbjct: 236  DRIQFTPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGASVSD 295

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              +    E  ELR +A  GL  RL+   ++ G   +DY +RL FEL+VI RMK++GYFLI
Sbjct: 296  AAEAAAAEAAELRRQAEQGLAKRLSVHGLSPGTTEEDYNKRLAFELDVITRMKYAGYFLI 355

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V+DFI+WAK + IPVGPGRGSGAGS+ AY+LTITD+DP+RF LLFERFLNP+R+SMPDFD
Sbjct: 356  VSDFIKWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFD 415

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQDRR EVI YVQ++YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+
Sbjct: 416  IDFCQDRRGEVIEYVQHRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLV 475

Query: 480  PNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P +PA P++  QAI  + + + AR  DP V R  +I+QKLEGL RHASTHAAGIVIGDRP
Sbjct: 476  PQNPAAPITLKQAIEGEPKLQAARDEDPIVARAFDIAQKLEGLTRHASTHAAGIVIGDRP 535

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            LS LVP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT L  ++  L QR + VDL
Sbjct: 536  LSDLVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLDVAVKLLKQRDIHVDL 595

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  +Y +L     +G+FQ+ES+GMR+AL  M+PD  EDIIALV+LYRPGP+ NI
Sbjct: 596  HTLPIDDAPSYQMLARGDVVGVFQVESAGMRRALIDMRPDRFEDIIALVALYRPGPMANI 655

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  RK+G E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LRRAMG
Sbjct: 656  PTYCARKHGDEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLRRAMG 715

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KKI+ EMDKQ+  F+ GA KNG++K  A  IF+LLAKFADYGFNKSHAAAYA++SY TA+
Sbjct: 716  KKIRAEMDKQRAIFVEGAVKNGVAKDAADTIFDLLAKFADYGFNKSHAAAYALVSYHTAY 775

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            MK HYPVEFLAASMTLE+ N +K+ +F  +A++  I++  PSVN     F+VG N I+Y+
Sbjct: 776  MKAHYPVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVGPNTIFYA 835

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            LA +KGVG    + I+EA  D+PF SL DF +RV+ + +N+RV+E L  AGA DC   +R
Sbjct: 836  LAGLKGVGMQAVQQIVEARGDRPFTSLADFSARVNPRAINKRVIECLAAAGAFDCLDSNR 895

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             ++    D I    Q   +  T+   ++F       +  I L +      + R   E   
Sbjct: 896  ARVFGGADAIVAACQRNHEAATSGQNDMFGGLSD--APSIILPQLEPWLPAERLRREYDA 953

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIG 1016
            +GF+ SGHPLD Y   L+++ ++ + E   A   G    ++AA VVS+ +++T+ G+++G
Sbjct: 954  IGFFLSGHPLDDYATALKRLRVQSWAEFCKAVKSGATAGKVAATVVSRMERRTKTGNKMG 1013

Query: 1017 WVTFSEPAKEYEANFF 1032
             +  S+P   +EA  F
Sbjct: 1014 IIGLSDPTGHFEAVLF 1029


>gi|330830740|ref|YP_004393692.1| DNA polymerase III subunit alpha [Aeromonas veronii B565]
 gi|328805876|gb|AEB51075.1| DNA polymerase III, alpha subunit [Aeromonas veronii B565]
          Length = 1159

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1048 (40%), Positives = 612/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VHS +S+++G   +N I+   AA+  PA+A+TD  N+   + F   A  
Sbjct: 1    MAD-PRFIHLRVHSDFSMVDGLQKINPIVGAAAANNMPALALTDQMNMCGLVRFYGAAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI+G    +          Q          + LL    +GYQ +  L+SR Y    
Sbjct: 60   KGIKPIVGADFWV----------QSDELGDEQFRLTLLAMDNDGYQNITLLISRGYQRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  SWL E   +G+I+L+GG  G + +     + Q+ E+ +  ++  F D  Y+
Sbjct: 110  VQGRPVIDKSWLAE-HAKGVIVLSGGREGDVGKFLLKGNRQMTEQCVAFYQTHFPDAYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V +A    LP+VATN  +FL+ +D++AH++ +A+     +  K
Sbjct: 169  ELLRTGRPDEEVYLHMAVAIATEFALPVVATNEVVFLNADDFDAHEIRVAIHDGYTLMDK 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP R +P  YL+++ EM  +F+D+PEALENTVEIA+RC+  +++       +       
Sbjct: 229  RRPRRYSPQQYLRSQEEMAELFADIPEALENTVEIAKRCNVTVRLGE-----YFLPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDFLVAKSKEGLEERLEFLFPDPQVRAERRPEYDERLDIELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V + YG + V+QIITFGS+ AKA +RDVGR L   Y  VDR+ KLI
Sbjct: 404  VDFCMDRRDEVIEHVSDMYGRDAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E    D  V  L++++++LEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPKLPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPLYCDDEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             VD++ IP DD +++ LL    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PVDIAAIPIDDKKSFDLLQRYETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G E I        H  + P+L+ T G+I+YQEQVMQIAQ L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGNEAISYPDEKWQHESLKPILEPTYGIILYQEQVMQIAQTLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRAGFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT +MDN +KI     + ++  + ++PP VNT    
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTADMDNTDKIVTLVDECQRMGLTVIPPDVNTGRYR 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + A+KGVG      I+ A   D PF  L DFC+RVD KKLN+RV+E L
Sbjct: 823  FSVNEDGHIVYGIGAVKGVGEGPIDAILSARDQDGPFRDLFDFCNRVDIKKLNKRVMEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA+D  G  R  L+ +L+   + A+   K +     ++F        D K       
Sbjct: 883  ILSGAMDRLGPHRAALMATLEEAMRAAEQHAKAQAVGQVDMFGVLTEEIDDVKKAFANVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   LR+       +   T R      A +V++ 
Sbjct: 943  HWPDKVWLEGERETLGLYLTGHPINQYSSELRRYTSGRLCDLHPTSRDTVTTAAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+++G  T  + +   +   F
Sbjct: 1003 RSMVTKRGNKMGIFTLDDRSGRLDVTLF 1030


>gi|146310386|ref|YP_001175460.1| DNA polymerase III subunit alpha [Enterobacter sp. 638]
 gi|145317262|gb|ABP59409.1| DNA polymerase III, alpha subunit [Enterobacter sp. 638]
          Length = 1160

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1049 (40%), Positives = 601/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F   A  
Sbjct: 1    MAE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG    +          Q +     +  I +L     GYQ L  L+SR Y    
Sbjct: 60   AGLKPIIGADFHV----------QSELLGDEMTQISVLAMNNTGYQNLTLLISRAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGL++++GG  G + ++    ++ + E+ +  +++ F DR Y+
Sbjct: 110  GAAGPWIDRDWLAEL-NEGLLLISGGRMGDVGKSLIRGNNVLVEQCVAFYEEHFPDRFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  F++ ED++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEENYLHAAVALAEQRGLPVVATNDVRFINAEDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +   Y+++  EM  +F+D+PEALEN+VEIARRC+  +++       +   +   
Sbjct: 229  KRPRNYSTQQYMRSEDEMCELFADIPEALENSVEIARRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L  K+  GLE     L      +      Y +RLD EL VI +M F GYFLI
Sbjct: 284  GEMSTEDFLVLKSKEGLEDRLEFLFPDEAERNEKRPPYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K  L 
Sbjct: 523  TDFAPLYCDESGQHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRRAKQGLE 582

Query: 600  L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                  IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         +   H  + P+L+ T G+I+YQEQVMQIAQ LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDVQWQHDCLKPVLEPTYGIILYQEQVMQIAQELSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRGTFEDGAKKNGIDGELAIKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N     
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINAGMYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA  +   F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAILEARNNGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL    K A    K       ++F          + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGEALKAADQHAKAEAIGQADMFGVLADEPEQIEQSYANCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                    E E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEHTVLEGERETLGLYLTGHPINQYLKEIERYVGGNRLKDMHPTERGKMTTAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|107103154|ref|ZP_01367072.1| hypothetical protein PaerPA_01004223 [Pseudomonas aeruginosa PACS2]
          Length = 1173

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1060 (39%), Positives = 612/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ +SL++G + +  +   +A    PA+A+TD +N+ S ++F + A  AGI+P
Sbjct: 4    SFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  + +            +     +  + LL   A+GY+ L EL+SR +   Q    +
Sbjct: 64   ICGADIWLA----------SREEDGPLSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEI 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   W++E   EGLI L+    G I  A        AE  L  + ++F +R YV +QR 
Sbjct: 114  IIERDWVKE-AAEGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRT 172

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R  D       V LA     PLVATN+  F+ +ED+EAH+  + +     +    RPR 
Sbjct: 173  SRVNDEEHLHAAVALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPRRPRT 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+ +EM  +FSDLPEALENTVEIA+RC+  +Q+    LP F       I    
Sbjct: 233  YSDQQYLKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGI---- 288

Query: 308  ENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++ LR+ +  GLE RL     +         Q Y  RL+FEL++I +M F GYFLIV DF
Sbjct: 289  DDYLRHASFEGLEERLEVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDF 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 349  IKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + RD VI YV + YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP + 
Sbjct: 409  MEGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 468

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +   R+   +D     + E++ KLEG+ R    HA G+VI    L+   
Sbjct: 469  GMTLD-KAYEQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFS 527

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ + +         V++
Sbjct: 528  PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKRGLEPVNI 587

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + 
Sbjct: 588  DFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 647

Query: 659  V--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + NRK+G+ ++   HP      ++P+LK T G+I+YQEQVMQIAQ+++GY+L  AD
Sbjct: 648  MVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGAD 707

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  FI G   NGI   +A NIF+L+ KFA YGFNKSH+AAY +
Sbjct: 708  MLRRAMGKKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 767

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQTAW+KTH+P  F+AA +T +M N +K+    ++ R   ++I+ P VN     F V 
Sbjct: 768  VSYQTAWLKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTVD 827

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D RI Y L AIKGVG      I E  A+  PF++L DFC RVD K++N+R LE+L+ AG
Sbjct: 828  DDGRIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAG 887

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            ALD  G                +R  LL +++   + A+   ++  + H ++F       
Sbjct: 888  ALDRLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEP 947

Query: 935  SDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               +     K        R + E+  LG Y +GHP+D Y+  +R+   +   E       
Sbjct: 948  EADVYANHRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDT 1007

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++V+ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1008 Q--TVAGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLF 1045


>gi|229826056|ref|ZP_04452125.1| hypothetical protein GCWU000182_01420 [Abiotrophia defectiva ATCC
            49176]
 gi|229789798|gb|EEP25912.1| hypothetical protein GCWU000182_01420 [Abiotrophia defectiva ATCC
            49176]
          Length = 1160

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1051 (33%), Positives = 571/1051 (54%), Gaps = 41/1051 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL +H+ +SLL+G+  ++ ++ ++      A AITD   ++  +EF +   A GI+P
Sbjct: 2    SFTHLHLHTGFSLLDGSSKISELVKRVKELGMDACAITDHGVMYGVIEFYKACKAEGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +      +     +        ++LL     G++ L+++VSR +  +      
Sbjct: 62   IIGCEVYVAPNSRFEK--GTEKSAKRYNHLILLAENDTGHKNLMKIVSRGFT-EGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            R+    L+E   EG+I  +   +G +         + A+   L  + +FG+   ++ LQ 
Sbjct: 119  RVDYELLREYH-EGIIASSACLAGIVPTKLREGDYEGAKAEALRLRDVFGENNFFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++      +++++    +PL+ATN+  +L +ED EAHDVL+ +    +V+  DR +
Sbjct: 178  HGLPEQKFVNQGLMRISAETGIPLIATNDCHYLYKEDAEAHDVLICIQTQKIVTDDDRMK 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  Y+K+  EM  IF  +PEA++NT +IA RC+  ++     LP +   E       
Sbjct: 238  YEGGQFYVKSPEEMKEIFHYIPEAIKNTEKIAERCNVEIEFGKYHLPEYPVPEG----YT 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L      G + R        G    + R RL +E++ I+ M F  YFLIV D+I +
Sbjct: 294  ALSYLNKLCEDGFKSRYEG---ITGDEENELRARLKYEIDTISNMGFVDYFLIVWDYINF 350

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+NNI VGPGRGS AGS+ AY L IT +DP++++LLFERFLNP+R++MPD DIDFC  R
Sbjct: 351  AKENNIAVGPGRGSAAGSIVAYCLGITGVDPIKYNLLFERFLNPERVTMPDIDIDFCVLR 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG E+V QI+TFG++ AK  +RDVGRAL +PYS  D++ K+IPN+    
Sbjct: 411  RQEVIDYVTEKYGREKVVQIVTFGTMAAKMVIRDVGRALDLPYSFCDKVAKMIPNELKMN 470

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ D+    +    +    +L+++S++LEGL RH S HAAG+VI  R +   VP+ 
Sbjct: 471  ID-KALKDNPDLMQLYEENEEAKKLIDLSRRLEGLPRHTSIHAAGVVISKREVDSYVPIS 529

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLI 601
                     TQ+ M+ IE+ GL+K DFLGL+ LT+++K+++ + +          D+  I
Sbjct: 530  TSS-DGAVTTQYTMETIEQLGLLKMDFLGLRNLTVIEKAVELVNRNRRKSGQEDFDIEKI 588

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
              +D   Y +++   T G+FQLES GM   ++ ++PD IEDIIA +SLYRPGP++ I  Y
Sbjct: 589  DMEDENIYLMISEGKTEGVFQLESPGMTSFMKKLRPDNIEDIIAGISLYRPGPMEFIDDY 648

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             N K    +I      + P+LK T G I+YQEQVMQI + L+GYS  ++D+LRRAM KK 
Sbjct: 649  INGKRNSTEIEYDCEELKPILKSTYGCIVYQEQVMQIVRELAGYSYGQSDLLRRAMSKKK 708

Query: 722  KEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               M ++++ F        I G    G+S+ +A  I++ +  FA Y FN+SHAAAYA I+
Sbjct: 709  DSVMRQERQNFVYGDETKGIPGCVAKGVSEQVANKIYDKMIDFAKYAFNRSHAAAYAFIT 768

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++K +YP E++AA +T  M N  K+ ++   ++   I I+PP VN    +F     
Sbjct: 769  YQTAYLKYYYPKEYMAALLTSVMSNTGKVSEYILSSKNMGIAILPPDVNEGEGNFTAVKE 828

Query: 834  RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y ++AIKG+G      I++   +   + SL D   R+    LN++ LE+L+ +GALD
Sbjct: 829  GIRYGMSAIKGLGENVTETIVKDREERGEYKSLSDLVERLSG-ILNKKGLEALIKSGALD 887

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSV 950
                +R + +   + +       + ++     ++F  A ++   + ++ +      +   
Sbjct: 888  GLSGTRREKMAVYEQVLDSVSHEKHSKMAGQLSLFDIAPQEDLSALEVKMPVLGEFDMET 947

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVV 1002
            +   E+ ++G Y SGHPL  Y+  LR +      +              G N  L  +  
Sbjct: 948  KLAFEKEMIGIYLSGHPLYDYQDFLRGICNTNSMDFAYDEEEGRVNVRSGMNYVLGGIAT 1007

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                K TR   R+ ++T  +     E   FP
Sbjct: 1008 GVNIKLTRNNQRMAFITLEDLVGNIEIIVFP 1038


>gi|311280847|ref|YP_003943078.1| DNA polymerase III, alpha subunit [Enterobacter cloacae SCF1]
 gi|308750042|gb|ADO49794.1| DNA polymerase III, alpha subunit [Enterobacter cloacae SCF1]
          Length = 1160

 Score =  782 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1049 (40%), Positives = 614/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      
Sbjct: 1    MAE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PI+G    +          Q       +  + +L +   GYQ L  L+SR Y    
Sbjct: 60   AGLKPIVGADFHV----------QNDLLGDEMSQLTVLAANNTGYQNLTLLISRAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G Q   I   WL E+  EGLI+L+GG  G + ++    ++ + E+    +++ F DR ++
Sbjct: 110  GAQGPWIDRDWLVEL-NEGLILLSGGRMGDVGKSLLRGNAALVEQCAAFYEEHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRADEESYLHAAVKLAEERGLPVVATNDVRFIDAGDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +   Y+++  EM  +F+D+PEALEN+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSSQQYMRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L  K+  GLE RL      +    +    Y +RLD EL VI +M F GYFLI
Sbjct: 284  GEMTTEDFLVVKSKEGLEERLEFLFPDEAERKEKRPPYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIDHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K  L 
Sbjct: 523  TDFAPLYCDESGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRRAKQGLE 582

Query: 600  L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                  IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRGTFEEGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA  +   F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP+  Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPITQYLKEIERYVGGVRLKDMHPTDRGKVTTAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|83592917|ref|YP_426669.1| DNA polymerase III subunit alpha [Rhodospirillum rubrum ATCC 11170]
 gi|83575831|gb|ABC22382.1| DNA polymerase III, alpha subunit [Rhodospirillum rubrum ATCC 11170]
          Length = 1170

 Score =  782 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 493/1042 (47%), Positives = 683/1042 (65%), Gaps = 22/1042 (2%)

Query: 8    SPS--FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            SP+  FVHL+VH++ S+ EGA+ +  ++   A    PA+AITD+ NLF ALE S  AC  
Sbjct: 15   SPANGFVHLRVHTALSMSEGAIQVKALVKLCAKMGMPAVAITDSGNLFGALELSVTACDM 74

Query: 66   GIQPIIGCQLDIDMQDNLKMT--NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            G+QPIIGCQ+ +  ++  +           P   ++VLL   A GY  L+++VSR ++  
Sbjct: 75   GVQPIIGCQIAVRNEEVRERGFGAGRDLRAPDPDAVVLLAKNASGYANLMKIVSRSFIEG 134

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             G ++ ++ L+ + E   +GLI+LTGG  GP+ R         A   L   K+ FGDR+Y
Sbjct: 135  DGSEAPQVRLADI-EALNDGLILLTGGVGGPLGRLLREGRRDEAAAILARHKEHFGDRVY 193

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            V +QRH   D  R E+ ++ LAY   + LVATN   +     +EAHDVL+ +   TV+  
Sbjct: 194  VEIQRHGMADEDRIEADLIDLAYAQNVALVATNEPYYPDRAMFEAHDVLICMQQKTVIGD 253

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            + R R+TP+HY K  +EM ++F+DLPEA++NT+ IA+RC+ + +   PILP     +   
Sbjct: 254  ETRRRLTPEHYFKPANEMRALFADLPEAVDNTLVIAKRCAVMSEKRKPILPHSPAVKG-- 311

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKG-------YHAQDYRQRLDFELNVIARMKFSG 355
              + E   L   A  GL+ RL +    +G         A+ YR+RL +EL+VI +M F G
Sbjct: 312  --RTEAEALCAMAEEGLDKRLEKHVYREGMSEAERIEIAKPYRERLAYELDVIIKMGFPG 369

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFIQWAK  +IPVGPGRGSGAGS  A+ALTITD+DPLRFSLLFERFLNP+R+SM
Sbjct: 370  YFLIVADFIQWAKDADIPVGPGRGSGAGSCVAWALTITDLDPLRFSLLFERFLNPERVSM 429

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQDRR+EVIRYVQ +YG+ERVAQIITFG LQA+A LR VGR LQMP   VD++
Sbjct: 430  PDFDIDFCQDRREEVIRYVQREYGYERVAQIITFGKLQARAVLRSVGRVLQMPLGYVDKI 489

Query: 476  CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            CK++PN+PA PV+  +AI  + + R+ +  D  V RLL+I  KLEGLY HASTHAAG+VI
Sbjct: 490  CKMVPNNPAAPVTLKEAIEAEPQLRDLQKNDEMVARLLDIGMKLEGLYSHASTHAAGVVI 549

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
            GDRPL  LV +YRD  SD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ ++  +A+RG+
Sbjct: 550  GDRPLDNLVALYRDPHSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQHAVRHIAKRGI 609

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             VDL  +P DD  +Y +L    T G+FQLES+GMR  L  M+PD +EDI+A+V+LYRPGP
Sbjct: 610  TVDLLDLPLDDRRSYDMLGRGETSGVFQLESTGMRDVLRNMKPDTLEDIVAIVALYRPGP 669

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +DNI  Y  RK G+E++V +H  ++P+LKET G++IYQEQVMQ AQ+++GYSL  AD+LR
Sbjct: 670  MDNIPSYIKRKKGEEEVVYLHDSLEPILKETYGILIYQEQVMQAAQIMAGYSLGGADLLR 729

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKKIK EMD Q+  F+ GA K G S+  A  +F+ +AKFA YGFNKSHAAAY +++Y
Sbjct: 730  RAMGKKIKAEMDTQRALFVEGAGKRGTSEAKASEVFDQIAKFAGYGFNKSHAAAYGLVAY 789

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YPVEF+AA+MT +M N +K+  F  + R+ +I ++PP VN     F V D  
Sbjct: 790  QTAYLKANYPVEFMAATMTYDMHNTDKLAVFKGELRRLDIPLLPPDVNRSFAVFGVEDGA 849

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            + Y+L A+K VG      ++    A  PF  L DF  R+D K +N+R+LE+L+ AGALD 
Sbjct: 850  VRYALGAVKNVGAAAMDALVAEREARGPFKDLADFARRLDGKVINKRLLENLIKAGALDS 909

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                R +LL + D + ++AQ   ++R +   ++F     T    +     +    +    
Sbjct: 910  LDGDRAKLLANADVLMRHAQAAAEDRASNQSSLFGGAGATSEPPMKFRACAAWTITETLA 969

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG---NNIRLAAMVVSKQQKKTR 1010
            +E+  +GFY S HPLD+Y   L ++ +   E     +RG     ++LA    +++++  +
Sbjct: 970  HERDAMGFYLSAHPLDIYGDSLERLDVVPIEMLPGHLRGGGSGAVKLAVTPGARKERIGK 1029

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
             GSR  +V  S+     E   F
Sbjct: 1030 SGSRYAFVELSDATGSCETMVF 1051


>gi|313109045|ref|ZP_07795017.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa 39016]
 gi|310881519|gb|EFQ40113.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa 39016]
          Length = 1185

 Score =  782 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1060 (39%), Positives = 612/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ +SL++G + +  +   +A    PA+A+TD +N+ S ++F + A  AGI+P
Sbjct: 16   SFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKP 75

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  + +            +     +  + LL   A+GY+ L EL+SR +   Q    +
Sbjct: 76   ICGADIWLA----------SREEDGPLSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEI 125

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   W++E   EGLI L+    G I  A        AE  L  + ++F +R YV +QR 
Sbjct: 126  IIERDWVKE-AAEGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRT 184

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R  D       V LA     PLVATN+  F+ +ED+EAH+  + +     +    RPR 
Sbjct: 185  SRVNDEEHLHAAVALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPRRPRT 244

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+ +EM  +FSDLPEALENTVEIA+RC+  +Q+    LP F       I    
Sbjct: 245  YSDQQYLKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGI---- 300

Query: 308  ENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++ LR+ +  GLE RL     +         Q Y  RL+FEL++I +M F GYFLIV DF
Sbjct: 301  DDYLRHASFEGLEERLEVLLPKDTPDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDF 360

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 361  IKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFC 420

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + RD VI YV + YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP + 
Sbjct: 421  MEGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 480

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +   R+   +D     + E++ KLEG+ R    HA G+VI    L+   
Sbjct: 481  GMTLD-KAYEQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFS 539

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ + +         V++
Sbjct: 540  PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVNI 599

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + 
Sbjct: 600  DFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 659

Query: 659  V--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + NRK+G+ ++   HP      ++P+LK T G+I+YQEQVMQIAQ+++GY+L  AD
Sbjct: 660  MVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGAD 719

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  FI G   NGI   +A NIF+L+ KFA YGFNKSH+AAY +
Sbjct: 720  MLRRAMGKKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 779

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQTAW+KTH+P  F+AA +T +M N +K+    ++ R   ++I+ P VN     F V 
Sbjct: 780  VSYQTAWLKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTVD 839

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D RI Y L AIKGVG      I E  A+  PF++L DFC RVD K++N+R LE+L+ AG
Sbjct: 840  DDGRIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAG 899

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            ALD  G                +R  LL +++   + A+   ++  + H ++F       
Sbjct: 900  ALDRLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEP 959

Query: 935  SDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               +     K        R + E+  LG Y +GHP+D Y+  +R+   +   E       
Sbjct: 960  EADVYANHRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDT 1019

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++V+ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1020 Q--TVAGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLF 1057


>gi|170744048|ref|YP_001772703.1| DNA polymerase III subunit alpha [Methylobacterium sp. 4-46]
 gi|168198322|gb|ACA20269.1| DNA polymerase III, alpha subunit [Methylobacterium sp. 4-46]
          Length = 1168

 Score =  782 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 512/1046 (48%), Positives = 700/1046 (66%), Gaps = 29/1046 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  HSSYSLLEGAL L +++   A D+QPA+A+TDTNNLF ALEFS+KA   GIQPI
Sbjct: 9    FVHLHTHSSYSLLEGALKLGDLVKAAAGDRQPALALTDTNNLFGALEFSEKAAGLGIQPI 68

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G QL +  +         +     +P +VLL     GY  L++L S  Y      ++ R
Sbjct: 69   AGIQLSVLFE---APEPGQRGGPAPLPHLVLLAKDETGYGHLLKLASLAYFDGPLGEAPR 125

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            + +  L++    GLI LTGG  GP+D        + A  RL    + FG D LYV +QRH
Sbjct: 126  VPVEALRDCAP-GLIALTGGPGGPLDSCLRAARPEHAAGRLARLVEAFGEDHLYVEIQRH 184

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D    E++++ LA  H LPLVATN   F   EDYEAHD L+A+A   +VS + R R+
Sbjct: 185  GLPDERAVEAELIGLADRHGLPLVATNEPFFARPEDYEAHDALLAIAEGRLVSDEKRRRL 244

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD------- 301
            TP H  K R+ M  +F DLP+AL  +VEIA RC++ ++   PILP F             
Sbjct: 245  TPRHDFKTRAAMAELFRDLPDALAASVEIAMRCAYRVRTRKPILPSFGVSGGPAARDAAQ 304

Query: 302  --------DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
                    D   +E  EL+ +A AGL  RLA+   A+G   QDYR RL +E+ +I +MKF
Sbjct: 305  AGSPAPAGDPALDEAGELKRQAEAGLARRLAEAGPAEGLSEQDYRDRLAYEIGIITKMKF 364

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFLIV+DFI+WAK N+IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFERFLNP+R+
Sbjct: 365  PGYFLIVSDFIKWAKANDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFERFLNPERV 424

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPDFDIDFC   R+ VI YVQ++YG  +VAQIITFG+L A+  LRDVGR L+MPY QVD
Sbjct: 425  SMPDFDIDFCVVGRERVIEYVQSRYGEAQVAQIITFGTLLARGVLRDVGRVLEMPYGQVD 484

Query: 474  RLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            +L KL+P +PA+PV+ +QAI  + R + A   +P V RL+EI++KLEGL+RHASTHAAG+
Sbjct: 485  KLTKLVPQNPANPVTLVQAIEGEPRLQSAMEEEPVVARLMEIAKKLEGLHRHASTHAAGV 544

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            VIGDRPL  LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+ + D L QR
Sbjct: 545  VIGDRPLEALVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTVLRGATDLLEQR 604

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G+ +DL+ +P DD  TY  L     +G+FQ+ES+GMR+AL  M  D  ED+IALV+LYRP
Sbjct: 605  GITLDLAALPLDDERTYERLRKGEVVGVFQVESAGMRKALVEMCADRFEDLIALVALYRP 664

Query: 653  GPIDNIVVYNNRKNGKEK----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            GP+ NI VY  RK G++     +   HP ++P+L ET G+I+YQEQVM++A++L+GYSL 
Sbjct: 665  GPMANIPVYCERKLGRDAGNEAVWYPHPKLEPILAETFGIIVYQEQVMEVAKVLAGYSLG 724

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            +AD+LRRAMGKKIK EMD Q++RF+ GA + G+ K  A  IF+LLAKFADYGFNKSHAAA
Sbjct: 725  DADLLRRAMGKKIKAEMDAQRDRFLKGAMERGLDKAKANEIFDLLAKFADYGFNKSHAAA 784

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+I+YQTA++K +YPVEFLAASM+ ++D+ +K+ +  QDA++  I++ PPSVN   V F
Sbjct: 785  YALITYQTAYLKANYPVEFLAASMSQDLDDTDKLAELRQDAQRLAIKVEPPSVNRSGVTF 844

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            +V D  I Y+LAAIKGVG      I++A  D+PF  L DF  R++ + +N+R LESLV A
Sbjct: 845  EVHDGTIRYALAAIKGVGRAAVEAIVQARGDRPFRDLGDFARRLNPRLVNKRTLESLVGA 904

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GALD     R +   +++ + + AQ   +  T    ++F       +  + +  +    +
Sbjct: 905  GALDEIEPDRARAFAAIEPMLRLAQGALEAETVGMTDMFGGVAAA-TVALRIPPYDPWPA 963

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQ 1006
            + R + E   +GF+ SGHPLD Y  +L+K+ ++ + E   +   GN++ R+AA V+ + +
Sbjct: 964  ADRLKKEYEAVGFFLSGHPLDEYGELLKKLRVQTWVEFCRSVRAGNSVGRVAATVLDRSE 1023

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++T+ G+++G V  S+    +EA  F
Sbjct: 1024 RRTKTGNKLGIVNLSDQTGHFEAIVF 1049


>gi|316933919|ref|YP_004108901.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris DX-1]
 gi|315601633|gb|ADU44168.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris DX-1]
          Length = 1151

 Score =  782 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 537/1036 (51%), Positives = 705/1036 (68%), Gaps = 15/1036 (1%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL VHS+YSLL+G++ +  + +   AD+QPA+A+TDT+N+F  LEFS K   
Sbjct: 1    MSNA-GFVHLHVHSAYSLLKGSMKIAKLAELAKADRQPALALTDTDNMFGGLEFSDKLSG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GIQPI+G +L ID  D    +  G    P    IVLL +  +GY+ L+ L SR +L   
Sbjct: 60   SGIQPIVGLELGIDFGDQDPNSRHGALATPA--RIVLLAAREQGYRSLMRLNSRAFLETP 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              Q   I L WL +  T+G+I LTGG  GPI  A       +A +R    ++ FGDRLYV
Sbjct: 118  VNQVPHIKLDWL-DGETDGVIALTGGPDGPISLAMLT-DPALAAQRCERLQQAFGDRLYV 175

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH    +R  E  ++ LAY   LPLVATN   F S EDYEAHD L+ +A   ++++ 
Sbjct: 176  ELQRHGTEAERRAEGGLIDLAYDKGLPLVATNEPHFASTEDYEAHDALLCIASGKLIAET 235

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC--- 300
            DR + TPDH  K R+EM  +F+DLPEAL +TVEIA+RC++      PILP F        
Sbjct: 236  DRVQFTPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGAGVSD 295

Query: 301  -DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              +    E  ELR +A  GL  RL+   ++ G   +DY +RL FEL+VI RMK++GYFLI
Sbjct: 296  AVEAAAAEAAELRRQAELGLAKRLSVHGLSPGTTEEDYNKRLAFELDVITRMKYAGYFLI 355

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V+DFI+WAK + IPVGPGRGSGAGS+ AY+LTITD+DP+RF LLFERFLNP+R+SMPDFD
Sbjct: 356  VSDFIKWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFD 415

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQDRR EVI YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+
Sbjct: 416  IDFCQDRRGEVIEYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLV 475

Query: 480  PNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P +PA P++  QAI  + + + AR  DP V R  +I+QKLEGL RHASTHAAGIVIGDRP
Sbjct: 476  PQNPAAPITLKQAIEGEPKLQAARDEDPIVARAFDIAQKLEGLTRHASTHAAGIVIGDRP 535

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            LS LVP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT L  ++  L QR + VDL
Sbjct: 536  LSDLVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTLDVAVKLLKQRDIHVDL 595

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P DD  +Y +L     +G+FQ+ES+GMR+AL  M+PD  EDIIALV+LYRPGP+ NI
Sbjct: 596  HTLPIDDAPSYQMLARGDVVGVFQVESAGMRRALIDMRPDRFEDIIALVALYRPGPMANI 655

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  RK+G E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL +AD+LRRAMG
Sbjct: 656  PTYCARKHGDEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLRRAMG 715

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KKI+ EMDKQ+  F+ GA KNG++K  A  IF+LLAKFADYGFNKSHAAAYA++SY TA+
Sbjct: 716  KKIRAEMDKQRAIFVEGAVKNGVAKDAADTIFDLLAKFADYGFNKSHAAAYALVSYHTAY 775

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            MK HYPVEFLAASMTLE+ N +K+ +F  +A++  I++  PSVN     F+VG N IYY+
Sbjct: 776  MKAHYPVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVGPNTIYYA 835

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L  +KGVG    + I+EA  DKPF SL DF +RV+ + +NRRV+E L  AGA DC   +R
Sbjct: 836  LGGLKGVGLQAVQQIVEARGDKPFASLADFAARVNPRAINRRVVECLAAAGAFDCLNSNR 895

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              +    D I    Q   +  T+   ++F          I L +      S R   E   
Sbjct: 896  AAVFAGADAIVAACQRNHEAATSGQNDMFGGLSDV--PSIILPQLDAWLPSERLRREYDA 953

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIG 1016
            +GF+ SGHPLD Y   L+++ ++ + E   A   G    ++AA VVS+ +++T+ G+++G
Sbjct: 954  IGFFLSGHPLDDYATALKRLRVQSWNEFCKAVKSGATAGKVAATVVSRMERRTKTGNKMG 1013

Query: 1017 WVTFSEPAKEYEANFF 1032
             +  S+P   +EA  F
Sbjct: 1014 IIGLSDPTGHFEAVLF 1029


>gi|117618855|ref|YP_855729.1| DNA polymerase III, alpha subunit [Aeromonas hydrophila subsp.
            hydrophila ATCC 7966]
 gi|117560262|gb|ABK37210.1| DNA polymerase III, alpha subunit [Aeromonas hydrophila subsp.
            hydrophila ATCC 7966]
          Length = 1159

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1048 (40%), Positives = 612/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL+VHS +S+++G   +N I+   AA+  PA+A+TD  N+   + F   A  
Sbjct: 1    MAE-PRFIHLRVHSDFSMVDGLQKINPIVGAAAANNMPALALTDQMNMCGLVRFYGAAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PI+G    +          Q          + LL    +GYQ +  L+SR Y    
Sbjct: 60   KGVKPIVGADFWV----------QSDELGDEQFRLTLLAMDNDGYQNITLLISRGYQRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  +WL E   +G+I+L+GG  G + +     + Q+ E+ L  ++  F D  Y+
Sbjct: 110  VQGRPVIDKAWLAE-HAKGVIVLSGGREGDVGKFLLKGNRQMTEQCLAFYQTHFPDAYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V +A    LP+VATN  +FL+ +D++AH++ +A+     +  K
Sbjct: 169  ELLRTGRPDEEVYLHMAVAIATEFALPVVATNEVVFLTADDFDAHEIRVAIHDGYTLMDK 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP R +P  YL+++ EM  +F+D+PEALENTVEIA+RC+  +++       +       
Sbjct: 229  RRPRRYSPQQYLRSQEEMAELFADIPEALENTVEIAKRCNVTVRLGE-----YFLPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDFLVMKSKEGLEERLEFLFPDPAVRAERRPEYDERLDIELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG E V+QIITFGS+ AKA +RDVGR L   Y  VDR+ KLI
Sbjct: 404  VDFCMDRRDEVIDHVSEMYGREAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E    D  V  L++++++LEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPKLPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPLYCDDEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             VD++ IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PVDIAAIPIDDKRSFDLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  +  RK+GKE I        H  + P+L+ T G+I+YQEQVMQIAQ L+GY+L
Sbjct: 643  LQSGMVDNFIERKHGKEAISYPDEKWQHESLQPILEPTYGIILYQEQVMQIAQTLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRAGFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT +MDN +KI     + ++  + ++PP VNT    
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTADMDNTDKIVTLVDECQRMGLTVIPPDVNTGRYR 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + A+KGVG      I+EA   D PF  L DFC+RVD KKLN+RV+E L
Sbjct: 823  FSVNEDGHIVYGIGAVKGVGEGPIDAILEARDRDGPFRDLFDFCNRVDIKKLNKRVMEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA+D  G  R  L+ +L+   + A+   K +     ++F        D K       
Sbjct: 883  ILSGAMDRLGPHRAALMATLEEAMRAAEQHAKAQAVGQVDMFGVLTEEIDDVKKAFANVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   LR+       +   T R      A +V++ 
Sbjct: 943  HWPDKVWLEGERETLGLYLTGHPINQYSGELRRYTSGRLCDLHPTSRDTVTTAAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+++G  T  + +   +   F
Sbjct: 1003 RSMVTKRGNKMGIFTLDDRSGRLDVTLF 1030


>gi|224534774|ref|ZP_03675346.1| DNA polymerase III subunit alpha [Borrelia spielmanii A14S]
 gi|224514022|gb|EEF84344.1| DNA polymerase III subunit alpha [Borrelia spielmanii A14S]
          Length = 1161

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1036 (37%), Positives = 605/1036 (58%), Gaps = 23/1036 (2%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A 
Sbjct: 14   GMSFRSKFIHLHVHSDYSLLDGAAKISDIVSKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AGI+PIIG +  +         +           ++LL     GY+ L++L S  YL +
Sbjct: 74   KAGIKPIIGIEAYMAKTSKFLKKHDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y
Sbjct: 131  GFYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQRH   D+     ++V+ +    +PL A N+S +++ ED  A D+++ +      S 
Sbjct: 190  LELQRHGIKDQDIVNERLVEYSRELGVPLTAANDSHYVNREDAVAQDIIVCIGTGAKKSD 249

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300
            ++R ++ T + Y+K++ EM  +F+DLPEALENTV I  +   F +    PILP +     
Sbjct: 250  ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDEFKITFPGPILPDYQIPIE 309

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D        L    + GL+                 + R  +EL VI RM F GYFLIV
Sbjct: 310  FD---TLGEYLEYLTLEGLK-------FRYKTLTSKIKDRAFYELGVIIRMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  ++IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDHDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV N+YG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNRYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              P   VSL+ + +D+  +E   + P    L++ +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  EGP--KVSLKEVLNDNSLKEYFTSKPIYKELMDAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFRIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+ +L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFKMLGEGKSASVFQFESEGMQQILKDTKPDNIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRSTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAVEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I++    +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFVRRVDDKVINKKFLESAIKSGLFDSLDKNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F     + +       + F   + S     E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKKLGQNSLFDVLGSQESIQQSFNYQVFEEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +         + +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAINNFSSLNVLKDLAAKKDSTVQFSGILNSVKIIQTKRNNSKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGSIDIVVF 1033


>gi|291616361|ref|YP_003519103.1| DnaE [Pantoea ananatis LMG 20103]
 gi|291151391|gb|ADD75975.1| DnaE [Pantoea ananatis LMG 20103]
          Length = 1160

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1049 (39%), Positives = 610/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL+VHS YS+++G      ++ K AA   PAIAITD  NL   ++F   A  
Sbjct: 1    MAE-PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGSAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG   ++            +     +  I +L +   GYQ L  L+SR Y    
Sbjct: 60   AGVKPIIGADFNVA----------SELMGDELTQITVLAANNTGYQNLTLLISRAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R+    +S +    L  +++ F DR ++
Sbjct: 110  GIAGPIIDRDWLAEL-QEGLILLSGGRRGDVGRSLLRGNSALVSDCLAFYQQHFADRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    +P+VATN   F++EED++AH++ +A+     +   
Sbjct: 169  ELVRTGRPDEESYLHAAVELAIAEGIPVVATNEVCFINEEDFDAHEIRVAIHDGYTLDDP 228

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEALEN+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPRHYSPQQYMRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE     L      +     +Y +RL+ ELNVI +M F GYFLI
Sbjct: 284  GDMTTEDFLVMKSREGLEERLAMLFPDEAVRAEKRPEYDERLEVELNVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K  L 
Sbjct: 523  TDFAPLYCDENGQYPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLP 582

Query: 600  L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                  IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIATIPLEDKKSFDMLQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA   GI   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFKDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQ 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I++A  +   F  L D C+R D+KK+NRRV+E L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+ +L++  K A    K       ++F          + +    +
Sbjct: 883  IMSGAFDRLGPHRAALMSALNDALKAADQHAKAEAIGQADMFGVLADEPEQVEQSYASVT 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V+ + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVQLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKITVAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|295093096|emb|CBK82187.1| DNA polymerase III catalytic subunit, DnaE type [Coprococcus sp.
            ART55/1]
          Length = 1194

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1062 (33%), Positives = 567/1062 (53%), Gaps = 49/1062 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+GA  ++ ++ +       ++AITD   ++  +EF +     GI+PI
Sbjct: 3    FTHLHVHTGYSLLDGAAKIDGLVRRAKELGYDSLAITDHGVMYGVIEFYETCLREGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +          +          +VLL     GY  L ++V+R +  +      R
Sbjct: 63   LGCEVYVSPGSRFDR--EVGKGDDRYYHLVLLAENDLGYHNLSKIVTRGFT-EGFYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            + +  L++   EG+I L+   +G +           A++  + ++ +FG +  ++ +Q H
Sbjct: 120  VDMEVLEKYH-EGIIALSACLAGEVATKLRKGDYDGAKETAIRYRNIFGEENYFLEMQDH 178

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++    + +++L+    +P+V TN+S ++  ED+EAHDVL+ +  +  V  ++R R 
Sbjct: 179  GIPEQATVNAGIMRLSKELGIPMVVTNDSHYIYAEDWEAHDVLLCIQTNHKVQDENRMRY 238

Query: 249  T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 YLK++ EM  +F    EALENT +IA RC+  +      +PRF   E        
Sbjct: 239  DGGQFYLKSKEEMAELFPYALEALENTHKIAERCNVNIVFGEQKVPRFDVPEG----YTA 294

Query: 308  ENELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            E  L +    G+E          G +A+G H  + RQR+D+EL+VI  M F  YFLIV D
Sbjct: 295  EEYLDHLVYEGMEKKYGLTYEESGKMAEGTHGYEVRQRIDYELSVIKSMGFVDYFLIVWD 354

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI +AK   I VGPGRGS  GSV AY L IT I+PL+++LLFERFLNP+R+SMPD DIDF
Sbjct: 355  FIHFAKSQGIAVGPGRGSAVGSVVAYCLDITTIEPLQYNLLFERFLNPERVSMPDIDIDF 414

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C  RR EVI Y   KYG E V QII + ++ A+  +RDVGRA+ +PY+  D L K IP +
Sbjct: 415  CYIRRQEVIDYCVRKYGEECVTQIIAYQTMGARNVIRDVGRAMDLPYAVCDSLAKAIPAE 474

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +   A+     FR+       + +L++I++KLEGL R+A  HAAG+VIG   + + 
Sbjct: 475  KDMTID-IALKTSKDFRDMYEGSDEIKKLVDIARKLEGLPRNAGMHAAGVVIGREAIEEY 533

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLI 601
             P+         VTQF    +E  G++K DFLGL+T T++Q ++  + Q     +D+  I
Sbjct: 534  APLSVGA-EGAVVTQFEKNTVEHLGMLKMDFLGLRTATVVQDTVKLVKQTTGKDIDIDNI 592

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             +DD     L+    T G+FQLES GMR  +  ++P  ++D+IA V+L+RPGP+  I  Y
Sbjct: 593  DYDDPNILGLMGQGKTEGMFQLESEGMRNFMMKLKPQSLDDVIAGVALFRPGPMQFIDDY 652

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K  +E +    P ++ +L+ T G IIYQEQVMQI   L+GY+L  +D++RRAM KK 
Sbjct: 653  IRGKENRELVHYDTPELEEILEPTYGCIIYQEQVMQIVMKLAGYTLGRSDLVRRAMAKKK 712

Query: 722  KEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
             EEM+K++  F+         G   NGIS+T+A  IF+ + KFA+Y FNKSH+ AYAV++
Sbjct: 713  PEEMEKERHNFVYGNKELNVPGCVANGISETVANKIFDEMMKFAEYAFNKSHSVAYAVLA 772

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
             QTA++K +YPVEF+AA M+  +DN  K+ K+    +Q  ++++PP +N     F + + 
Sbjct: 773  AQTAYLKYYYPVEFMAALMSSVIDNNGKVAKYISVCKQMGVEVLPPDINEGVAKFSISNG 832

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            +I Y L+ IK VG      I      + PF  L +F +R+ SK  N++ +E+L+ +GA D
Sbjct: 833  KIRYGLSGIKSVGGAVVDRIEAERTKNGPFKDLRNFLTRMPSKDTNKKTVEALILSGAFD 892

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVENSSV 950
              G +R Q++ +L  I + A    K+R +   ++F      F     +        +   
Sbjct: 893  DMGANRKQMMMALPAIAEEAARERKSRESGQMSLFDLMGDDFVQSNLVPYPDVEEYSDQE 952

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-------------------VATIR 991
            +   E+ VLG Y SGHPL  Y  ++++       +                         
Sbjct: 953  KLALEKSVLGVYISGHPLGKYIELMQRTCTAQATDFVVDTEDDDEMSRDQGDGDGQKLQD 1012

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 +  ++     K T+    + +VT  +   + E   FP
Sbjct: 1013 NAMYVIGGLISRVTVKLTKNNQNMAYVTIEDLVGQVEVIVFP 1054


>gi|152968778|ref|YP_001333887.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae MGH 78578]
 gi|238893180|ref|YP_002917914.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae NTUH-K2044]
 gi|150953627|gb|ABR75657.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae MGH 78578]
 gi|238545496|dbj|BAH61847.1| DNA polymerase III subunit alpha [Klebsiella pneumoniae subsp.
            pneumoniae NTUH-K2044]
          Length = 1160

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1049 (40%), Positives = 613/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      
Sbjct: 1    MAE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G    +          Q          + +L +   GYQ L  L+SR Y    
Sbjct: 60   AGIKPIVGADFHV----------QCDLLGDEFTELTVLAANNTGYQNLTLLISRAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E   EGLI+L+GG  G +  +    +  + E+ +  +++ F DR ++
Sbjct: 110  GALGPWIDRDWLVE-HQEGLILLSGGRKGDVGVSLIRGNMPLVEQCVAFYEEHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  FL   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRQDEEAYLHAAVALAEARGLPVVATNDVRFLDTSDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y QRLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDFLVMKSKEGLEERLEFLFPDPAVRAEKRPEYDQRLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D +   PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEQGLHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEG 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA  +   F  L D C+R D KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|148381587|ref|YP_001256127.1| DNA polymerase III DnaE [Clostridium botulinum A str. ATCC 3502]
 gi|148291071|emb|CAL81534.1| DNA polymerase III, subunit alpha [Clostridium botulinum A str. ATCC
            3502]
          Length = 1194

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1082 (35%), Positives = 595/1082 (54%), Gaps = 61/1082 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F HL +H+ YSLL+GA  +NNI+         +IAITD   ++  ++F + A  
Sbjct: 1    MSDKK-FTHLHLHTGYSLLDGAGKINNIIASAKELGMDSIAITDHGAMYGCVDFYKAAKN 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++ IIGC++ I  +    M+ +   P   +  +VLLV    GY+ LI++VS+  + D 
Sbjct: 60   AGLKAIIGCEVYIVPKS---MSIKNSDPNNKIYHLVLLVKNEIGYKNLIKIVSKASI-DG 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 R    +L++  +EGLI L+    G I       + + A++  L +K +F D  Y+
Sbjct: 116  FYYKPRTDHQFLKD-HSEGLIALSACLGGEIQSNLLNENKEKAKEIALFYKSIFKDGFYL 174

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQ H    +R      ++LA   ++PLVATN+  ++ ++D + HD+L+ +     V+++
Sbjct: 175  ELQYHGNDAERKVNDMNIRLARELKIPLVATNDVHYIEQKDSKFHDILLCIQTGKTVNKE 234

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +R R  +   YLK+  EM  +FS +PEAL+NT +IA +C+F    H   LP+F+  E  D
Sbjct: 235  NRLRYPSDQFYLKSADEMWEMFSHVPEALKNTEKIAEQCNFHYDFHTSKLPKFLLPEGTD 294

Query: 303  IQKEEE-----------NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
              +  +           +  R+       +        +   A+ Y  RL +EL+VI  M
Sbjct: 295  PFEYMKKFCFKGLIKRCDLFRDLLTKSFNINEIIALGKENEEAKIYIDRLQYELSVIDHM 354

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             +  YFLIV+DFI++A +  IP GPGRGSGAGS+ AY L IT IDP+++ L+FERFLNP+
Sbjct: 355  GYVDYFLIVSDFIKFANEKKIPTGPGRGSGAGSLVAYTLGITKIDPIKYGLIFERFLNPE 414

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD D DFC +RR E+I YV  KYG E V+QIITFG++ A+  +RDVGRA+   Y +
Sbjct: 415  RISMPDIDSDFCYERRGEIIDYVVEKYGKENVSQIITFGTMAARVCIRDVGRAMNYSYVE 474

Query: 472  VDRLCKLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            VD++ K+IP  P   +++   +A +   +     +  V  L+++S  LEGL RH+STHAA
Sbjct: 475  VDKIAKMIPIVPGIIITIDKALALNPELKNEYENNLRVKELIDVSMNLEGLPRHSSTHAA 534

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GI+I   P+   VP+ ++      V+QF+M  +++ G +K DFLGLKTLT+L+ ++D + 
Sbjct: 535  GIIISSSPIGDYVPLQKN--EHNIVSQFDMTTLDELGFLKMDFLGLKTLTVLKDAVDMIM 592

Query: 591  Q-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            Q   V +DL  I  +D E Y ++    T+GIFQLES+GM   ++ ++PD +EDIIA +SL
Sbjct: 593  QNHNVDIDLDKIDINDKEVYKMIGEGKTIGIFQLESTGMTSFMKELKPDSLEDIIAGISL 652

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            YRPGPID I  Y   K   +KI  + P ++P+LK T G ++YQEQVM+I + L+GYS+  
Sbjct: 653  YRPGPIDEIPKYIENKKNPDKITYLTPQLEPILKITYGCLVYQEQVMEIVRKLAGYSMGR 712

Query: 710  ADVLRRAMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFA 757
            +D++RRAM KK  + M+++++ FI             G  +N +S+ I   +F+ +  FA
Sbjct: 713  SDLVRRAMSKKKHKVMEEERKNFIYGIVKEDGEIEVPGCIRNEVSEKIGNELFDSMMDFA 772

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             Y FNKSHA AYA+++YQTA++  +YP E++AA +   M +  K+  +   A    IQ++
Sbjct: 773  SYAFNKSHAVAYALVAYQTAYLMKYYPAEYIAAKLNSVMGDNGKVAYYINYAESLGIQVL 832

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKK 876
            PP +N     F V DN I + L AIK VG   A+ I+++   +  F SL DF S++D   
Sbjct: 833  PPDINESFSKFIVEDNTIRFGLDAIKNVGIGAAKIIVKSRKKNGNFKSLIDFASKIDLTT 892

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGTFS 935
            +N+R +ESL+ AGA DCF   R +LL   + +        K   +   ++F A       
Sbjct: 893  INKRAIESLIKAGAFDCFKVFRSRLLAVYEKVLDSISNQRKRNIDGQVSLFNADNTIVNI 952

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-------- 987
              I   +    +       E+ +LG Y +GHPLD Y   L+       E+ +        
Sbjct: 953  PIIKYPEIKEFDKKYLLAMEKEMLGIYITGHPLDEYAQSLKIQTSIRIEKILCSHNKVLN 1012

Query: 988  ----------------ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                                G  + +  ++    +K TR  + + ++   + +   E   
Sbjct: 1013 DDSIIEISSDNNIIRGDINDGERVVIGGIITKVSRKITRNNTIMAFLKLEDLSGIIEVIV 1072

Query: 1032 FP 1033
            FP
Sbjct: 1073 FP 1074


>gi|296121520|ref|YP_003629298.1| DNA polymerase III, subunit alpha [Planctomyces limnophilus DSM 3776]
 gi|296013860|gb|ADG67099.1| DNA polymerase III, alpha subunit [Planctomyces limnophilus DSM 3776]
          Length = 1176

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1046 (36%), Positives = 576/1046 (55%), Gaps = 31/1046 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S  F HL  HS +SLL+GA  L+ ++ K+ A    ++AITD  NL+ AL+F   A  
Sbjct: 1    MTSSRPFAHLHCHSQFSLLDGATRLDGLIKKVKASGMNSVAITDHGNLYGALDFYLMAKG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+ PI+G +  I     L+ +   +        + LL     G+Q L++L S+ ++ + 
Sbjct: 61   AGVNPILGMEAYIAPGSRLEKSGASRM-KEASYHLTLLAMNRVGFQNLVKLSSKAFI-EG 118

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L E  +EGLI L+G ++G + +       + AEK    + + FGDR ++
Sbjct: 119  FYYKPRIDKEIL-EAHSEGLICLSGCAAGELSQHLLGERFEEAEKLCHWYSQTFGDRFFM 177

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +Q       R    + V LA    LPLVATN++ +L+ ED    DVL+ V   +  S  
Sbjct: 178  EIQNAGYQIQRDCLERTVDLAKKMGLPLVATNDAHYLNTEDAAVQDVLLCVNTKSERSDP 237

Query: 244  DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R ++  +  +++   EM + F    +A+  + EIA R    L +     P F   E   
Sbjct: 238  KRMKMEGNQLFVRTPEEMYAAFEGFEDAVARSQEIADRVDIDLDLKTRHFPVFTTPE--- 294

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              K + + LR     GL+ R  +  I      Q++R RL FEL+VI +M +  YFLIV D
Sbjct: 295  -NKRDIDYLRELCEEGLKWRYGEENI-----RQEHRDRLAFELSVIEKMGYPSYFLIVWD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            F+++A +  IP    RGS  G++ AY L ++ + P+++ LLFERFL+P R   PD DIDF
Sbjct: 349  FVRFAIEKGIP-ASARGSACGALVAYVLGLSHVCPIKYDLLFERFLDPSRTEPPDIDIDF 407

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C+DRR +VI Y + KYG   V+QI TFG+L+AKAA+RDVGR L +P  +VD + KL+P +
Sbjct: 408  CRDRRQDVIDYTKAKYGEANVSQIGTFGTLKAKAAIRDVGRVLAVPLKRVDEIAKLVPEE 467

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A+   S  + A   DP +  L + + +LEGL R A THAAG+V+ DRP+S  
Sbjct: 468  LGIELK-EALEKSSDLKAAYDTDPQIRELFDYAIQLEGLARSAGTHAAGVVVSDRPISDY 526

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601
            VP+         VTQ+    +EKAGL+K DFLGL+ LT+L K++  +A  RGV +D   +
Sbjct: 527  VPLQTISGKTDLVTQWEGPTVEKAGLLKMDFLGLRNLTILDKAVKNVALHRGVTIDPVKL 586

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIV 659
            P DD ETY LL    T GIFQLES GMR  L  M+PD   DIIA  +LYRPGP++   ++
Sbjct: 587  PLDDKETYALLQRGETKGIFQLESGGMRDLLTKMKPDSFNDIIATSALYRPGPLEGGMVM 646

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y   K+ +  +  +HP++D +L ET GV++YQEQVM+I   L G  L ++    +A+ K
Sbjct: 647  TYVEVKHKRAPLPRVHPIMDTILDETYGVMVYQEQVMRILNRLGGIELPQSYQCIKAISK 706

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  E + K K +F+ G+ KNG+ +  A  +FE++ KFA YGFNKSH+ AYA ++YQTA++
Sbjct: 707  KKLETIAKYKAQFVEGSQKNGLPEAKATELFEMIEKFAGYGFNKSHSTAYAAVAYQTAFL 766

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYS 838
            K HYP EF+AA ++ EM++ ++I +   D R+ NI+I+PP +N   V+F V G  ++ + 
Sbjct: 767  KAHYPAEFMAALLSCEMEDTDRINEHIDDCRRMNIEIVPPDINHCDVEFTVRGPRQVAFG 826

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKGVG  T + I+EA     PF S+ D C RVD+K L++  LE LV AGALD     
Sbjct: 827  LGAIKGVGEATTQAIVEARQLKGPFTSIFDLCERVDAKSLSKGSLEILVKAGALDSISPK 886

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----KITLEKFSVENSSVRF 952
            R      ++   + AQ ++K++    +N+F  ++            TL      +   + 
Sbjct: 887  RASQFACIERAVQAAQSLQKDKARGQKNLFGGDEADSQPGESTSSATLPDVPEWSHREKL 946

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK- 1011
              E+ VLGFY + HPL      + +       +      G  + L  MV S ++  T+K 
Sbjct: 947  AYEREVLGFYLTSHPLTEQAETIGRYTSYQAMQLAELEDGVEVMLGGMVSSIKKATTKKP 1006

Query: 1012 ---G-SRIGWVTFSEPAKEYEANFFP 1033
               G SR       +P        +P
Sbjct: 1007 SRNGHSRYVNFDLEDPTGVVRCIMWP 1032


>gi|308185755|ref|YP_003929886.1| DNA polymerase III, alpha subunit [Pantoea vagans C9-1]
 gi|308056265|gb|ADO08437.1| DNA polymerase III, alpha subunit [Pantoea vagans C9-1]
          Length = 1160

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1049 (39%), Positives = 612/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL+VHS YS+++G      ++ K AA   PAIAITD  NL   ++F   A +
Sbjct: 1    MAE-PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGGAHS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+P+IG   ++            +     +  + +L S+  GYQ L  L+SR Y    
Sbjct: 60   AGIKPVIGADFNVA----------SELMGDELTQLTVLASSDTGYQNLTLLISRAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R+    ++ +  + L  +++ F DR Y+
Sbjct: 110  GVDGPIIDRDWLIEL-QEGLILLSGGRRGDVGRSLLRGNNALVSQCLSFYQQHFPDRYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    +P+VATN   F++ ED++AH++ +A+     +   
Sbjct: 169  ELIRTGRQDEESYLHAAVELAIAEGIPVVATNEVCFINAEDFDAHEIRVAIHDGYTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +FSD+PEALEN+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE     L      +     +Y +RL+ ELNVI +M F GYFLI
Sbjct: 284  GDMTTEDYLVVKSREGLEERLVFLFPDEAERAEKRPEYDERLEIELNVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDIDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKRDQVIEHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +    IA + +      AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLEKAFIA-EPQLPAMYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPLYCDEHGQFPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKEGLE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA   GI   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFRDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYP 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y + AIKGVG      I++A  +   F  L D C+R D+KK+NRRV+E L
Sbjct: 823  FHVNEAGEIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ +L +  K A    K       ++F    +     + +    +
Sbjct: 883  IMSGAFDRLGPHRAALMSALSDALKAADQHAKAEAIGQADMFGVLAEEPEQVEKSYASVT 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V+ + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVQLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKITVAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|240850744|ref|YP_002972144.1| DNA polymerase III subunit alpha [Bartonella grahamii as4aup]
 gi|240267867|gb|ACS51455.1| DNA polymerase III subunit alpha [Bartonella grahamii as4aup]
          Length = 1164

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 588/1038 (56%), Positives = 754/1038 (72%), Gaps = 8/1038 (0%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            + +     P F+HL+VHS+YSLLEGAL +  I+ +  +D  PA+AITDTNNLF ALEFSQ
Sbjct: 10   MQENKNSLPRFIHLRVHSAYSLLEGALKIPQIIQQAISDHAPAVAITDTNNLFGALEFSQ 69

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRM 119
               A G+QPIIGCQL +D  D    +   K   P+   SIVLL ++  GY  L+ LVSR 
Sbjct: 70   HCLAHGVQPIIGCQLTVDFCDENDHSRLAKWRNPSDFCSIVLLAASEIGYAHLVRLVSRA 129

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            YL  +      I  +WL    +EG+I+LTGG  GPI+ +      + A +RL+  KK F 
Sbjct: 130  YLDKRDTDPPHIKANWLSA-HSEGIIVLTGGKGGPINLSLAEEKKEHAVERLIYLKKSFA 188

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            DRLYV LQRH  YDR  E+ +++LAY HE+PLVATN + FL  E YEAHD LMAV+   +
Sbjct: 189  DRLYVELQRHGSYDRRVEADLIELAYAHEIPLVATNEAFFLKREGYEAHDALMAVSEGQI 248

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK- 298
            VS  DR RVTPDHYLK++ EMV++FSDLPEALEN+VEIA RC     +  PILPRFIE+ 
Sbjct: 249  VSNPDRKRVTPDHYLKSQDEMVTLFSDLPEALENSVEIALRCHIATPLRKPILPRFIEQS 308

Query: 299  -ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               ++  + E++EL N+A AGL++RL    +A+GY   DY QRLD+E++VI RM+FSGYF
Sbjct: 309  ANSENTLEVEDSELLNQAKAGLKMRLETIGLAEGYTIADYEQRLDYEISVITRMQFSGYF 368

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV+DFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPD
Sbjct: 369  LIVSDFIKWAKVHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPD 428

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ+RR+EVI+YVQ KYG  +VAQIITFG LQA+A LRDVGR L++PY QVD L K
Sbjct: 429  FDIDFCQERREEVIQYVQKKYGRNQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTK 488

Query: 478  LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP  P   V    AI D+ +F E +  DP V R L+I+ +LEGLYRHASTHAAGIVIGD
Sbjct: 489  LIPATPGSQVELADAIKDEPKFEEEKKKDPVVGRALDIALQLEGLYRHASTHAAGIVIGD 548

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL +LVPMYRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++DF+A++G+K+
Sbjct: 549  RPLWELVPMYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVARKGIKI 608

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DLS IP +D  TY ++    T+G+FQ+ESSGMR+AL GM+PD IEDIIALV+LYRPGP++
Sbjct: 609  DLSNIPLNDETTYAMMARGETVGVFQVESSGMRKALIGMKPDRIEDIIALVALYRPGPME 668

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            NI  YN RK+G+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRA
Sbjct: 669  NIPTYNARKHGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRA 728

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKKI  EM KQ+ RF++GA   G+ K  A  IF+LLAKFADYGFNKSHAAAYA++SYQT
Sbjct: 729  MGKKIHAEMQKQRTRFVNGAVAGGVDKDQADIIFDLLAKFADYGFNKSHAAAYAIVSYQT 788

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A+MK +YPVEFLAASMT +M N +K+  F ++A +  I+++ PS+ T    F+VGDN IY
Sbjct: 789  AYMKANYPVEFLAASMTYDMTNTDKLNDFRREALRLGIEVIAPSIQTSHRVFEVGDNCIY 848

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            YSLAAIKGVG T   HI+    DK F  LEDFC+RVD + +N+R +ESLV AGA DCF  
Sbjct: 849  YSLAAIKGVGETVVDHIVACRGDKIFKDLEDFCARVDPRIVNKRAMESLVCAGAFDCFNI 908

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  LL +L  +   A  +  + ++   +IF    G     I L + +    + +   E 
Sbjct: 909  AREVLLANLGTLHARALRILDDNSSGQVDIFGMAGGLKEPLI-LSQTTSWLPAEKLYREF 967

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSR 1014
            + +GFYFS HPL+ Y+ IL K  I+ +      ++G     RLA  VV+K  +KT+ G +
Sbjct: 968  QAIGFYFSAHPLEEYQAILDKKRIQTWVNFANAVKGGATAARLAGTVVAKNVRKTKSGKK 1027

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            +G + FS+ + +YEA  F
Sbjct: 1028 MGIIHFSDTSGQYEAVLF 1045


>gi|300724779|ref|YP_003714104.1| DNA polymerase III subunit alpha [Xenorhabdus nematophila ATCC 19061]
 gi|297631321|emb|CBJ92016.1| DNA polymerase III, alpha subunit [Xenorhabdus nematophila ATCC
            19061]
          Length = 1160

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1049 (39%), Positives = 612/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K+A    PA AITD  NL   ++F   A +
Sbjct: 1    MTE-PRFVHLRVHSDYSMIDGLAKTGPLVKKVAKLGMPAFAITDFTNLCGLVKFYGSAHS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    ++                    + +L    EGYQ L  L+S  Y    
Sbjct: 60   AGIKPIIGADFYVE----------SDLLGDEYAHLTVLACNNEGYQNLTLLISESYQKGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL++  + GLI+L+GG  G + +     +  + E+ L  +++ F +  Y+
Sbjct: 110  GAVGPTIKREWLEKY-SAGLILLSGGRMGDVGKFLLRGNRAMVEQCLDFYQEHFPNSYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  FL  ED++AH++ +A+     ++  
Sbjct: 169  ELIRTGRLDEENYLHAAVELAAEKNLPVVATNDVCFLESEDFDAHEIRVAIHDGYTMADP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL++  EM  +FSD+PEAL+N+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPKNYSPQQYLRSEQEMCELFSDIPEALQNSVEIAKRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE     L      +     +Y  RLD ELNVI +M F GYFLI
Sbjct: 284  GDMSTEDFLVEKSKQGLEERLEFLYPDPEIRAQKRPEYDDRLDIELNVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERISMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIDHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +    IA + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLEKAFIA-EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K DL 
Sbjct: 523  TDFAPIYCDPEGQNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMVNARRAKKDLE 582

Query: 600  L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                  IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIAAIPLDDQKSFDMLQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F +G+ K G++  +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKQPEEMAKQRSVFEAGSIKQGVNGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I+EA      F  L D C+RVD+KK+NRRV+E L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIEARQKAGHFKELFDLCARVDTKKINRRVMEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+ SL++  K A    K       ++F          +       
Sbjct: 883  IMSGAFDRLGPHRAALMSSLEDAFKAADQHAKAEATGQTDMFGVLAEKPEQVEHAYASTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP+  Y   + +       ++   T RG    +  +V++
Sbjct: 943  KWPDQVVLDGERETLGLYLTGHPITSYLKEIERYTNGMRLKDVNPTPRGQVTTVVGLVLA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 SKILTTKRGNRIGISTLDDRSGRLEIMLF 1031


>gi|218962013|ref|YP_001741788.1| DNA polymerase III, alpha subunit [Candidatus Cloacamonas
            acidaminovorans]
 gi|167730670|emb|CAO81582.1| DNA polymerase III, alpha subunit [Candidatus Cloacamonas
            acidaminovorans]
          Length = 1146

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1033 (36%), Positives = 579/1033 (56%), Gaps = 31/1033 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  ++ ++        PA+AITD  NLF A++F + A  AGI+P
Sbjct: 2    SFVHLHNHTQYSMLDGACRVDRMIKLAKEYAMPAVAITDHGNLFGAIDFYKTAKNAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +  I   D    T + +        ++LL    +GY+ L++L S  Y+        
Sbjct: 62   ILGIEAYIINGDLESETGKNEIR----YHLILLAQNEQGYKNLMKLSSYSYIK-GFYYKP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI  + L++  +EGLI L+    G I    + +  Q AE+  L +K LF +  Y+ +Q H
Sbjct: 117  RISKTLLKQY-SEGLICLSACVKGEIPALIYNDRMQQAEEVALWYKDLFQEHFYIEIQDH 175

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                ++    +++ LA   E+P+V TN+  +L++ DYEAHD+L+ +    ++   DR   
Sbjct: 176  NLEPEKKIMPRLIDLAKKLEIPMVLTNDCHYLNKNDYEAHDILLCIQTGKLLHDPDRLHY 235

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T   Y K+  EM  +F D+PEA  NT++IA      L     +LP           K  
Sbjct: 236  GTNQLYFKSPEEMKELFPDVPEAYNNTLKIADMVDLELHYDKFLLPNIETP---PEFKTM 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR       +++            +  +QR+++EL VI RM F+GYFLIV D I  A
Sbjct: 293  GEYLRFLCYENAKIKYPD-------LNETIKQRIEYELEVIDRMGFNGYFLIVKDIIDNA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +K ++PVGPGRGSGAGS+ AY L IT IDPL++ L+FERFLNPDR+SMPD DIDFC   R
Sbjct: 346  RKQSVPVGPGRGSGAGSIVAYLLDITQIDPLQYGLVFERFLNPDRISMPDIDIDFCAQNR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +VI Y+  +YG E V QIITF +L AK+ ++DV R L +P S+ + + K I     +  
Sbjct: 406  SKVIDYIIQRYGRESVTQIITFSTLGAKSVIKDVARVLSVPASEANAITKTIQ---GNKT 462

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A      F     ++     + + S+ LEGL R  S H AG+VI    L+  VP+  
Sbjct: 463  LDEAYNQYPEFSSLINSNDLYRTIFKHSKVLEGLVRQTSVHPAGVVIAPGDLTDYVPLAC 522

Query: 548  DVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
              +       + QF  KW+    L+K D LGLK LTL+QK++D + Q + + +D++ I  
Sbjct: 523  STQKGEEKVILVQFEGKWLNDLKLLKMDILGLKNLTLIQKTIDLVKQAQDIDIDINHISL 582

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D + Y++L    T G+FQ ES GMR+ L  ++P+ IED+IA+V+LYRPGP+  I  Y  
Sbjct: 583  EDKKVYNILGKGETDGVFQFESDGMRKYLIELKPNKIEDLIAMVALYRPGPMQFIDSYIA 642

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+EK+V  HPL++  LKET GV IYQEQVMQIA+ + G++  EAD LR+AMGKK  +
Sbjct: 643  RKHGREKVVYDHPLMENALKETYGVTIYQEQVMQIAREMGGFTGGEADSLRKAMGKKNSD 702

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M + +E+F  GA    +   +   I++   +FA+Y FNKSHA  YA+++YQTA++K +Y
Sbjct: 703  LMQQYQEKFRQGAKAQNVPDAVIEKIWQDWLRFAEYAFNKSHATCYALVAYQTAYLKAYY 762

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF+AA ++LE D  +   K  +  ++  I+I+PP++N    +F+V    + + L AIK
Sbjct: 763  PVEFMAALLSLEDDPTKIPGKI-EVCKKMGIKIIPPNINRSDSEFRVHGKEVLFGLRAIK 821

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             +G    R I+E    + P+ S+ +FC+R+DS  +N+ +LESL+ +GA+D    +R Q  
Sbjct: 822  NLGDAAMRDIIEDRNQNGPYTSIFEFCNRLDSTSVNKTILESLIASGAMDELEGTRAQKW 881

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVL 959
              ++   +++   +K+R      IF        D      L      +   + E E+ VL
Sbjct: 882  NVIELALQFSSNDQKDRKRGQSTIFDFMDTEDEDNNYYPPLPSVEPWSYIYQLEKEKEVL 941

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            GFY SGHPL  Y+ +++ +          T     + +A ++ +  +KK  KG+ I +V 
Sbjct: 942  GFYLSGHPLFEYRSLIKHLTNANSST-GKTKNNGELLIAGIINNISKKKDNKGNPIAFVE 1000

Query: 1020 FSEPAKEYEANFF 1032
            F +   ++E   F
Sbjct: 1001 FEDLCGKFEVPLF 1013


>gi|206579408|ref|YP_002240328.1| DNA polymerase III, alpha subunit [Klebsiella pneumoniae 342]
 gi|288937034|ref|YP_003441093.1| DNA polymerase III subunit alpha [Klebsiella variicola At-22]
 gi|290512455|ref|ZP_06551821.1| DNA polymerase III subunit alpha [Klebsiella sp. 1_1_55]
 gi|206568466|gb|ACI10242.1| DNA polymerase III, alpha subunit [Klebsiella pneumoniae 342]
 gi|288891743|gb|ADC60061.1| DNA polymerase III, alpha subunit [Klebsiella variicola At-22]
 gi|289774796|gb|EFD82798.1| DNA polymerase III subunit alpha [Klebsiella sp. 1_1_55]
          Length = 1160

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1049 (40%), Positives = 614/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      
Sbjct: 1    MAE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G    +          Q          + +L +   GYQ L  L+SR Y    
Sbjct: 60   AGIKPIVGADFHV----------QCDLLGDEFTELTVLAANNTGYQNLTLLISRAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E   EGLI+L+GG  G +  +    +  + E+ +  +++ F DR ++
Sbjct: 110  GALGPWIDRDWLVE-HQEGLILLSGGRKGDVGVSLIRGNMPLVEQCVAFYEEHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  FL   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRQDEEAYLHAAVALAEARGLPVVATNDVRFLDTSDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEALEN+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y QRLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDFLVMKSKEGLEERLEFLFPDPAVRAEKRPEYDQRLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D +   PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEQGLHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEG 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSIFEDGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA  +   F  L D C+R D KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTDRGKVTTAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|212636262|ref|YP_002312787.1| DNA polymerase III subunit alpha [Shewanella piezotolerans WP3]
 gi|212557746|gb|ACJ30200.1| DNA polymerase III alpha subunit [Shewanella piezotolerans WP3]
          Length = 1156

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1047 (39%), Positives = 593/1047 (56%), Gaps = 38/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G   +  IL K++    PA+A+TD  N+   ++F      
Sbjct: 1    MSD-PLFVHLRVHSDFSMSDGLSKVKPILAKVSELGMPAVALTDQTNMCGLVKFYGGCHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  + +                + SI  +    EGY  L  L+S  YL   
Sbjct: 60   AGIKPIIGTEFWVQVP-----------GVDELCSITAIAMNNEGYSSLTLLISDAYLRGH 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL +   +GLI+L+GG  G + RA   ++    +  +  ++  F DR Y+
Sbjct: 109  IDDRAVIDHEWLAKY-NDGLILLSGGRHGDVGRALLKDNKAQVDSLIEFYQTHFPDRYYL 167

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R     V+LA   +LP+VATN  +F   E +EAH++ +A++    ++  
Sbjct: 168  ELLRTGRPDEERYLHMAVELAQAKDLPVVATNQVVFNKPEQFEAHEIRVAISDGFTLADP 227

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   Y K+  EM  +F D+PEA++NTVEIA+RC+  ++++              
Sbjct: 228  RRPKKYSDQQYFKSSEEMCELFEDIPEAIQNTVEIAKRCNVTVRLNEYF-----LPNFPT 282

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L + +  GLE RL         +     +Y +RLD EL VI  M F GYFLI
Sbjct: 283  GDLTIEDFLVDVSEKGLEERLEFLFPDPEVRAEKRPEYDERLDIELKVINEMGFPGYFLI 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW K N+IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 343  VMEFIQWGKDNDIPIGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 402

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V + YG + V+QIITFG++ AKA +RDVGR    PY  VDR+ K+I
Sbjct: 403  VDFCMDRRDEVIDHVADLYGRDAVSQIITFGTMAAKAVIRDVGRVQGHPYGFVDRISKMI 462

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   +   +E+      V  L+++ + LEG+ R+A  HA G+VI    +
Sbjct: 463  PAEPGMTL-AKAFEVEPALQESYDGSEEVKDLIDMCRILEGVTRNAGKHAGGVVIAPTKI 521

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-----LAQRGV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L             
Sbjct: 522  TDFSPIYCDSEGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMVNAVKDKNGED 581

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +V +  I   D + + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 582  RVRIESISLTDPKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 641

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  +  +L  T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 642  LQSGMVDNFIERKHGREEVSYPDAEYQHESLKELLSPTYGIILYQEQVMQIAQVLAGYTL 701

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  G+ KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 702  GGADMLRRAMGKKKPEEMAKQRGTFEEGSIKNGVDGPLSMKIFDLVEKFAGYGFNKSHSA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP +F+AA M+ +MDN +KI     +  +  + ++PP VN     
Sbjct: 762  AYALVSYQTLWLKTHYPSQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFR 821

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F V D+  I Y + A+KGVG      I+EA  D PF  L DFC+R+D KKLNRRV+E L+
Sbjct: 822  FTVDDDLNIVYGIGAVKGVGEGPVDSILEARKDGPFTDLFDFCARIDLKKLNRRVIEKLI 881

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSV 945
             AGALD  G  R  L+ +L    + A    K       ++F         DK      + 
Sbjct: 882  CAGALDNLGPHRAALVATLPEAIRAADQHAKAEAIGQHDMFGLLNNEPEDDKQQFVDCTP 941

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                V  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ +
Sbjct: 942  WPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTVKAAGLVVATR 1001

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+++G VT  + +   E   F
Sbjct: 1002 VMMTKRGAKMGLVTLDDKSARLEVMLF 1028


>gi|327392812|dbj|BAK10234.1| DNA polymerase III alpha subunit DnaE [Pantoea ananatis AJ13355]
          Length = 1160

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1049 (39%), Positives = 610/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL+VHS YS+++G      ++ K AA   PAIAITD  NL   ++F   A  
Sbjct: 1    MAE-PRFIHLRVHSDYSMVDGLAKTGPLIKKAAALGMPAIAITDFTNLCGLVKFYGGAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG   ++            +     +  I +L +   GYQ L  L+SR Y    
Sbjct: 60   AGVKPIIGADFNVA----------SELMGDELTQITVLAANNTGYQNLTLLISRAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGLI+L+GG  G + R+    +S +    L  +++ F DR ++
Sbjct: 110  GIAGPIIDRDWLAEL-QEGLILLSGGRRGDVGRSLLRGNSALVSDCLAFYQQHFADRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    +P+VATN   F++EED++AH++ +A+     +   
Sbjct: 169  ELVRTGRPDEESYLHAAVELAIAEGIPVVATNEVCFINEEDFDAHEIRVAIHDGYTLDDP 228

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEALEN+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPRHYSPQQYMRSEEEMCELFADIPEALENSVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE     L      +     +Y +RL+ ELNVI +M F GYFLI
Sbjct: 284  GDMTTEDFLVMKSREGLEERLAMLFPDEAVRAEKRPEYDERLEVELNVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K  L 
Sbjct: 523  TDFAPLYCDENGQYPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLP 582

Query: 600  L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                  IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIATIPLEDKKSFDMLQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA   GI   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFKDGAESMGIDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQ 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I++A  +   F  L D C+R D+KK+NRRV+E L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNEGGYFRELFDLCARTDTKKINRRVMEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+ +L++  K A    K       ++F          + +    +
Sbjct: 883  IMSGAFDRLGPHRAALMSALNDALKAADQHAKAEAIGQADMFGVLADEPEQVEQSYASVT 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V+ + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVQLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKITVAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|289208654|ref|YP_003460720.1| DNA polymerase III subunit alpha [Thioalkalivibrio sp. K90mix]
 gi|288944285|gb|ADC71984.1| DNA polymerase III, alpha subunit [Thioalkalivibrio sp. K90mix]
          Length = 1159

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/1054 (40%), Positives = 604/1054 (57%), Gaps = 57/1054 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS YSL++G + L  ++  +A    PA+A+TD  NLF  ++F + A A G
Sbjct: 6    HDPGFVHLRVHSEYSLIDGLVRLKPLVAAVAEKGMPAVAVTDHCNLFGLVKFYRAAIAQG 65

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +QPIIG  L +          +      +V  + LL     GY+ L  L+SR +   Q K
Sbjct: 66   VQPIIGADLLV----------RDARADGSVARMTLLAQNDPGYRNLTRLISRAWQEGQEK 115

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGP------IDRAFFFNSSQVAEKRLLTFKKLFGD 180
               RI   WL     EGLI L+GG  G       + R    +        L  + K F  
Sbjct: 116  GIPRIDAEWLDS-AAEGLIALSGGIDGLFVSGSGVARVLTHDD-------LAPWLKRFPG 167

Query: 181  RLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            R Y+ L R  R  +     Q +  A   ELP+VATN+  FL  ED+EAH+  + +   T 
Sbjct: 168  RFYLELTRTERPGEEAWIEQALAAAEQFELPVVATNDVRFLKAEDFEAHEARVCIHDGTT 227

Query: 240  VSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +    RP R +   YL    EM   FSD+PEAL N+V IARRCS  L +   +LP F   
Sbjct: 228  LDDPSRPRRYSEHQYLATPQEMTERFSDIPEALANSVAIARRCSVSLTLGESVLPDFPVP 287

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E        E+ LR  +  GLE RL +   A      +Y +RL  EL+VI +M F GYFL
Sbjct: 288  EG----YTVEDHLRETSAKGLEARLERFQFA---ERSEYEERLKLELDVICQMGFPGYFL 340

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVADFIQWAK N IPVGPGRGSGAGS+ AY L ITD+DPLR+ LLFERFLNP+R+SMPDF
Sbjct: 341  IVADFIQWAKDNGIPVGPGRGSGAGSLVAYVLGITDLDPLRYELLFERFLNPERVSMPDF 400

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC ++RD+VI YV  +YG ++V+QIIT G++ AKA +RD GR L   Y  VDR+ KL
Sbjct: 401  DVDFCMEKRDDVIDYVAERYGRDKVSQIITHGTMAAKAVVRDCGRVLGYGYGFVDRIAKL 460

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP +    +  +A+A+    +     D  V  ++++++KLEGL R+A  HA G+VI    
Sbjct: 461  IPFELGMTLD-KALAESEDLKSQYDQDEEVRGIIDLARKLEGLTRNAGKHAGGVVIAPSA 519

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            L+   P+Y +      VT F+   +E  GL+KFDFLGL+TLT++  +++ + +   +  +
Sbjct: 520  LTDFSPLYCEDDGGSLVTHFDKDDVEAVGLVKFDFLGLRTLTIIDWAVENVRKMDPETRI 579

Query: 599  SLI--PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             L   P DD +T+ LL    T  +FQLES GM+  +  +QPD  EDIIALV+LYRPGP+ 
Sbjct: 580  DLDAVPLDDPDTFKLLKAYQTTAVFQLESGGMKDLIRRLQPDSFEDIIALVALYRPGPLQ 639

Query: 657  NIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +   + +RK+G+ ++   HP ++P+L+ T GVI+YQEQVMQIAQ+L+ Y+L  AD+LR
Sbjct: 640  SGMVDDFIDRKHGRAQVEYPHPDLEPILQPTYGVILYQEQVMQIAQVLANYTLGGADLLR 699

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ F+ GA   G+ +  A  IF+L+ KFA YGFNKSH+AAYA+++Y
Sbjct: 700  RAMGKKKPEEMAKQRQIFMEGALGRGVEEGTATYIFDLMEKFAGYGFNKSHSAAYALVAY 759

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-N 833
            QTAW+K HYP  F+AA ++ +MDN +K+    ++ R   ++++PP VN     F   D  
Sbjct: 760  QTAWLKAHYPAPFMAAVLSADMDNTDKVVGLIEECRNMGLEVLPPDVNQSDYRFTCRDAG 819

Query: 834  RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             + Y L AIKGVG +    +++A A D PF  L D C RVD  KLN+RVLE+LV AGALD
Sbjct: 820  TVVYGLGAIKGVGESAIETLLKARAVDGPFHGLIDLCQRVDLSKLNKRVLETLVRAGALD 879

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
              G +R  LL  +      A+  E+N +    ++F         +   E         R 
Sbjct: 880  AIGANRATLLNDIPTAVAAAEQTERNASLGVVDLFGDPAAAVVPES--ETLPEMEDDDRL 937

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN--------------NIRLA 998
              E+  LG Y +GHP++ Y+  L+++    + E  A +                  +R+A
Sbjct: 938  RGEKETLGLYLTGHPVERYRAELKRLTGSTFAELEAKLEQRPDEGGQQGRRGRQETVRIA 997

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +VV  + + T+ G R+G  T  + +   E   F
Sbjct: 998  GLVVGVRVRNTQNG-RMGIATLDDRSGRAEIVLF 1030


>gi|296269404|ref|YP_003652036.1| DNA polymerase III subunit alpha [Thermobispora bispora DSM 43833]
 gi|296092191|gb|ADG88143.1| DNA polymerase III, alpha subunit [Thermobispora bispora DSM 43833]
          Length = 1174

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/1056 (33%), Positives = 532/1056 (50%), Gaps = 39/1056 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YS+L+GA  L  +   +     PAIAITD  NL  + +F ++A AAGI+P
Sbjct: 4    SFVHLHVHTEYSMLDGAARLKQMFKLVGELGMPAIAITDHGNLHGSYDFYKQATAAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIG +  +  +                    +       + +      G   LI+L SR 
Sbjct: 64   IIGIEAYVAPESRFNKQPVLWGEPHQRGDDVSAGGFYTHLTIWARNKTGLHNLIKLSSRA 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            Y     ++  R+    L E   EGL+  TG  SG +           A K    ++++FG
Sbjct: 124  YTEGFVRKWARMDAELLAE-HAEGLMASTGCPSGEVQTRLRLGQYDEALKAAAKYQEIFG 182

Query: 180  -DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +  Y+ L  H    +R     +V++  T  LP V TN+S +  + D   HD L+ +   
Sbjct: 183  KENFYLELMDHGLDIERRVRDDLVRIGRTLGLPPVVTNDSHYTYQSDAAGHDALLCIQTG 242

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
              ++  DR R     Y     E +          E           +           + 
Sbjct: 243  KQLNDPDRFRFEGTEYYIKTPEEMRALDSSDLWQEGCRNTLAIAEKVDPTGFFEYKNLMP 302

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                   K EE   R K   G+  R   G         ++R+ ++ E++VI +M F  YF
Sbjct: 303  TFPIPEGKTEEEYFREKVWEGMRRRFPDGVD------DEHRELVEKEISVIVQMGFPSYF 356

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+VADFI WAK N I VGPGRGS AGS+ AYAL ITD+DP+   L+FERFLNP+R+SMPD
Sbjct: 357  LVVADFIMWAKNNGIRVGPGRGSAAGSLVAYALGITDLDPIPHGLIFERFLNPERVSMPD 416

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF + RR +VIRYV  K+G ++VA I TFG+++AKAA++D  R L  PY+  DR+ K
Sbjct: 417  IDVDFDERRRADVIRYVTEKWGADKVAMIATFGTIKAKAAIKDAARVLGYPYALGDRITK 476

Query: 478  LIPN-DPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
              P       +              +    R+    DP V   +++ + LEGL R    H
Sbjct: 477  AFPPAVMGKDIPLSGIFDPEHPRYHEAGELRKMYEEDPDVKAAIDLGRGLEGLIRQTGVH 536

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAG+++   PL+  +P+ R       +TQF+    E  GL+K DFLGL+ LT++   L  
Sbjct: 537  AAGVIMSSEPLTDHIPIMRRDSDGAIITQFDYPTCEALGLLKMDFLGLRNLTIIDDCLKM 596

Query: 589  -LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
              A  G K+DL  +P DD +TY LL    TLGIFQL+  GMR  L  M+PD  EDI A +
Sbjct: 597  IEANTGEKIDLLELPLDDAKTYELLARGDTLGIFQLDGGGMRSLLRLMKPDNFEDISAAL 656

Query: 648  SLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIAQL 701
            +LYRPGP+  ++ + Y  RKNG+++I  IHP ++  LK+    T G+I+YQEQVM IAQ 
Sbjct: 657  ALYRPGPMGANSHINYALRKNGQQEITPIHPELEEPLKDILSTTYGLIVYQEQVMAIAQK 716

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            ++ Y+L  AD+LRRAMGKK KEE+D+Q E F  G  +NG S      ++++L  F+DY F
Sbjct: 717  VANYTLGGADLLRRAMGKKKKEELDRQFEFFEKGMKENGFSDEAIRALWDILVPFSDYAF 776

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NK+H AAY ++SY TA++K +YP E++AA +T   D+ +K   +  + R+  I+++PP V
Sbjct: 777  NKAHTAAYGLVSYWTAYLKANYPAEYMAALLTSVKDDKDKSALYLNECRRMGIKVLPPDV 836

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRR 880
            N    DF      I + L+A++ VG      I++A  +   F    DF  +V ++  N+R
Sbjct: 837  NDSDFDFTPRGGDIRFGLSAVRNVGANVVDGIIKARKEKGRFTDFADFLRKVPAQVCNKR 896

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
            V+ESL+ AGA D  G+ R  L    +        ++KN     +++F   +G       +
Sbjct: 897  VIESLIKAGAFDSLGHERKGLFMIHEQAVDAVIDIKKNEAIGQDSLFGAVEGAEDTTFDV 956

Query: 941  EKFS-VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRGNNIRL 997
            +      +     + E+ +LG Y S HPL   + IL                  G  + +
Sbjct: 957  QVPPGEWDKRTLLQFEREMLGLYVSDHPLLGVEHILAAGSDCSIAALQDESHPDGQVVTV 1016

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              ++   Q+K T+KG      T  +     E   FP
Sbjct: 1017 GGILSGLQRKITKKGDTWVLATLEDLEGSIEVMIFP 1052


>gi|315111546|ref|YP_421932.2| DNA polymerase III subunit alpha [Magnetospirillum magneticum AMB-1]
          Length = 1154

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 494/1047 (47%), Positives = 681/1047 (65%), Gaps = 31/1047 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL+VH++YSL EGA+ L  ++        PA+ ITDT NLF ALEFS     
Sbjct: 1    MPAYADFVHLRVHTAYSLAEGAIKLKQLIKLCEKAAMPAVGITDTANLFGALEFSTSCSD 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPI+G Q+ I  +D    +  G+ P P    +VLL     GY  L++LVS+ +L   
Sbjct: 61   AGIQPIVGAQIAIRREDG-GPSKDGRKPEPDT--LVLLCQNEAGYLNLLKLVSKAFLETD 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              ++ ++ L  L E  ++GLI+LTGG +GP+ R      ++ AE  L    + F  R YV
Sbjct: 118  AGETPQVTLHDL-ETRSDGLIVLTGGPAGPVGRLLADGQTEKAEIVLARLARAFAGRCYV 176

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L RH    +   E  +V LAY H+LPLVATN + F     YEAHD L+ +A    +SQ 
Sbjct: 177  ELMRHNLEVEDRIEPLLVSLAYKHDLPLVATNEAFFADRGMYEAHDALVCIAEGAYISQD 236

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            +R R+TP+HY K+  EM ++F+DLPEA +NT+ IARRC+F          + I       
Sbjct: 237  ERRRLTPEHYFKSPEEMRALFADLPEACDNTLVIARRCAF-----GVAKRKPILPPYRMD 291

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-------YRQRLDFELNVIARMKFSGY 356
               E   LR K   GLE RL +    +G    +       YR+R++FELNVI  M F GY
Sbjct: 292  GLTEAEVLRKKTWEGLEARLEKHVFKEGMTDDEKEHAAKPYRERIEFELNVIEEMGFPGY 351

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV+DFIQW+K   IPVGPGRGSGAGS  A+ALTITD+DPLR+ LLFERFLNP+R+SMP
Sbjct: 352  FLIVSDFIQWSKAQEIPVGPGRGSGAGSAVAWALTITDLDPLRWGLLFERFLNPERVSMP 411

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFCQDRR+E IRYVQ KYG+ +VAQIITFG LQA+A LRDVGR LQMPY QVDR+C
Sbjct: 412  DFDIDFCQDRREETIRYVQGKYGYSQVAQIITFGKLQARAVLRDVGRVLQMPYGQVDRIC 471

Query: 477  KLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            KL+PN+PA+P++  QA+  +   +E +  D +V  L++++ KLEGLYRHASTHAAG+VIG
Sbjct: 472  KLVPNNPANPMTLEQALESEPLLKEQKERDEAVSHLIDLAMKLEGLYRHASTHAAGVVIG 531

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594
            DRPL +LVP+YRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT++  ++  + +   +
Sbjct: 532  DRPLDELVPLYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVMVTAVKHVKKTKGI 591

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +DLS IP DD ++Y LL+     G+FQLESSGMR  L  M P+ +ED+IA+V+LYRPGP
Sbjct: 592  DIDLSAIPLDDAKSYELLSRGDAAGVFQLESSGMRDVLRKMGPNRLEDLIAVVALYRPGP 651

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  Y   K+GKE+   +HPL++P+LKET G+++YQEQVMQIAQ+LSGYSL  AD+LR
Sbjct: 652  MDQIPRYIACKHGKEEPDYMHPLLEPILKETFGIMVYQEQVMQIAQVLSGYSLGGADLLR 711

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK +EEMD+Q+ +F+ GA+   +    A  IF+ +AKFA+YGFNKSHAAAYA+I+Y
Sbjct: 712  RAMGKKDREEMDRQRAKFVEGATARAVDGGQASMIFDKVAKFAEYGFNKSHAAAYALIAY 771

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831
            QTAW+K +YP EF+AA+MT EM N +K+  F Q+  +  I+++PP +N     F V    
Sbjct: 772  QTAWLKANYPAEFMAATMTYEMSNTDKLNSFRQELDRLGIKLLPPDINASQPTFSVEVLP 831

Query: 832  --DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
               + + Y+LAA+K VG    + +++       F  + DF +R+DSK LNRR LE++V A
Sbjct: 832  DGGSAVRYALAALKNVGEAAMKSLVDERERGGRFKDVGDFAARMDSKVLNRRQLENMVKA 891

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            G  D    +R +L ++ D + +YA    ++R +   ++     G+ +  + LE     + 
Sbjct: 892  GVFDSLDKNRGRLFKNADTLCRYAASAAEDRDSSQMSLLG---GSNAPTLKLESGPDWSP 948

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR---GNNIRLAAMVVSKQ 1005
              +   E   +GFY S HPLD Y   ++++ +    E    ++      +RLA  ++SKQ
Sbjct: 949  HEKLNQEFEAVGFYLSAHPLDAYAKSMKRLNVLKIAELPRHLQSGGKGRVRLAGSLLSKQ 1008

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++ + KGSR  ++ FS+ +  +E   F
Sbjct: 1009 ERVSAKGSRYAFLQFSDASGMFEVTCF 1035


>gi|237808841|ref|YP_002893281.1| DNA polymerase III, alpha subunit [Tolumonas auensis DSM 9187]
 gi|237501102|gb|ACQ93695.1| DNA polymerase III, alpha subunit [Tolumonas auensis DSM 9187]
          Length = 1160

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1049 (39%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL +HS +S+L+G   +  ++ + A +   A+AITD  N    + F   A +
Sbjct: 1    MAE-PRFVHLHIHSDFSMLDGLQKIKPLVARAAENNMVAMAITDQMNQSGLVRFYGDAHS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG    +          Q +     +  ++ L    EG Q LI+L+S+ +L   
Sbjct: 60   KGIKPIIGVDFWV----------QSEELGDELFHLIGLAMNNEGQQNLIQLISKGFLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  +WL E    G+I+L+GG  G I +     +  + E+    +++ F +R Y+
Sbjct: 110  IQGRAVIDKAWLAE-HATGVILLSGGRDGDIGKFLLKGNQAMVERCTAFYQQHFPERFYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA   +LP+VATN+ +FL+++D++AH++ +A+     +   
Sbjct: 169  ELIRTGRLDEETYLHMAVELAIQQDLPVVATNDVVFLNKDDFDAHEIRVAIHDGYTLDDA 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP R +   Y++ + EM  +F D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 229  RRPKRYSNQQYMRTQDEMCELFKDIPEALANSVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA         A+    Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDFLVMKSKEGLEERLAFLFPDPAERAEKRIAYDERLDIELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL   LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLALDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDRRDEVIDHVAQMYGREAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E    D  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFDVEPKLVELYEQDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D +   PVTQF+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFAPLYCDDQGLQPVTQFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINPRLKTEGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             VD++ IP DD  ++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PVDIAAIPLDDPTSFKILKNSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDIQWQHDSLQPILEPTYGIILYQEQVMQIAQTLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F SGA  NG+   +A++IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSGFESGAVSNGVDGELAMHIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT +MDN +KI     + ++  ++++PP VNT    
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTADMDNTDKIVTLVDECQRMGLKLIPPDVNTGQYR 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   + Y + A+KGVG      I+ A     PF  L DFC+RVD K+LN+RV+E L
Sbjct: 823  FTVNERGEVVYGIGAVKGVGEGPVEAIIAARNEGGPFRDLFDFCNRVDIKRLNKRVMEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKF 943
            ++AGALD  G  R  L+ SL+   K A+   K+      ++F             T    
Sbjct: 883  IYAGALDRLGPHRAALMASLEEAMKAAEQKAKDAALGQNDLFGDLFADDGVLPTPTFADV 942

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
               +     + E+  LG Y +GHP++ Y   L+        +   T R      A +V++
Sbjct: 943  PEWSDQKWLDGERETLGLYLTGHPINQYLAELKHYTSGRLCDLQPTERDKPAVAAGLVLN 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+++G +T  + +   +   F
Sbjct: 1003 ARIMVTKRGTKMGILTLDDRSGRLDITLF 1031


>gi|289422260|ref|ZP_06424114.1| DNA polymerase III subunit alpha [Peptostreptococcus anaerobius
            653-L]
 gi|289157311|gb|EFD05922.1| DNA polymerase III subunit alpha [Peptostreptococcus anaerobius
            653-L]
          Length = 1193

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1065 (36%), Positives = 605/1065 (56%), Gaps = 55/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +E++  F HL VH+ YSLL+G   L+ ++ ++      + AITD   +F A++F +K   
Sbjct: 1    MEENKDFCHLHVHTEYSLLDGFSRLDRLIPRLKELGMTSCAITDHGTMFGAIDFYKKCKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIGC++ +  +    +  +          ++LL    EGY+ LI++VS  Y +D 
Sbjct: 61   EGIKPIIGCEVYVAPRT---LDQKDSVLDKYSSHLILLAENNEGYENLIKIVSDSY-VDG 116

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 R     L++  ++G+I L+   +G + +A    + + A    + ++ +FG D  Y
Sbjct: 117  FYYKPRTDKDQLRKY-SKGIICLSACLNGEVAKALLARNYENALNYAVEYRDIFGKDNFY 175

Query: 184  VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H+   D+   + +++++    +PLVATN++ ++  ED +  DVLM +A    +  
Sbjct: 176  LEMQDHKLAEDKEVNAGLIKISKELGIPLVATNDAHYVYREDSKIQDVLMCIAMQKTLDD 235

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              R +    + Y+K+R EM  +F  +PEA++NT+EIA+RC+     +   +P F   E  
Sbjct: 236  PSRMKFPNDEFYIKSREEMEGLFKFVPEAIDNTLEIAKRCNVEFDFNNYHIPTFKVPEG- 294

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                 EE+ LR     GLE R             + R RL+FE+N IA M +  YFLIV 
Sbjct: 295  ---YTEESYLRYLCQKGLEERYED-------ITDEIRDRLEFEINTIANMGYIEYFLIVW 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI +AK+NNI VGPGRGS AGS+ AY L ITDIDP++++LLFERFLNP+R++MPD DID
Sbjct: 345  DFINFAKENNIMVGPGRGSAAGSIVAYTLKITDIDPIKYNLLFERFLNPERVTMPDIDID 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC  RR+EVI YV+ KYG + VAQIITFG++ AK A+RDVGR L + Y++VD + K IP 
Sbjct: 405  FCYKRREEVIEYVKRKYGSDHVAQIITFGTMGAKLAIRDVGRVLDIAYNKVDAVAKEIPF 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +  +A   +    E   +D  V  ++++S+KLEG+ RHASTHAAG+VI  RP+  
Sbjct: 465  ELNMTID-KAFDKNPTLTEMYESDQDVKEVIDVSRKLEGMVRHASTHAAGVVISKRPVHD 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF------LAQRGVK 595
             VP+YR+   D   TQF M  +E+ GL+K DFLGL+TLT+++ +LD             K
Sbjct: 524  YVPLYRN--QDSITTQFTMTTLEELGLLKMDFLGLRTLTVIRDALDLIEINREDRGYTEK 581

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D S + +DD + Y LL++  TLG+FQLESSGMR  ++ ++PD  EDI+A +SL+RPGP+
Sbjct: 582  IDFSKMDYDDPKVYELLSSGNTLGVFQLESSGMRNFMKQLKPDSFEDIVAGISLFRPGPM 641

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D+I  Y + KN  E+   +H  + P+L+ T G ++YQEQVMQ+ + L+GYS   +D++RR
Sbjct: 642  DSIPRYISFKNNPEEATYLHEKLRPILEVTYGCLVYQEQVMQVVRELAGYSFGRSDLVRR 701

Query: 716  AMGKKIKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNK 763
            AM KK  + M+++++ FI             G  +NG+ + IA  IF+ +  FA Y FNK
Sbjct: 702  AMSKKKMDVMEEERQYFIHGKFDDKGNIEIPGCIRNGVPEDIANQIFDDMIDFAKYAFNK 761

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAAAY V++Y+TA++KT+YPVEF+AA MT  + N +K+ ++ ++  +  I+++PP +N 
Sbjct: 762  SHAAAYGVLAYETAYLKTYYPVEFMAALMTSVIGNTDKVVEYMRECSKLGIEVLPPDINR 821

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVL 882
                F V    I + L A+K VG      I++   +   F    +   R+DS+  N+R +
Sbjct: 822  SYSMFSVDKGHIRFGLVAVKNVGANVIDGIVKEREEGGEFTDFVNMIKRLDSRFTNKRAI 881

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-----TFSDK 937
            ESL+  GALD  G +R  LL S ++I       +K       ++F             D 
Sbjct: 882  ESLIKCGALDSLGETRASLLLSFEDILDSVSRDKKRNVEGQISLFDMVSDQGQDLGIIDN 941

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG---YEESVATI---- 990
             +++ +      +  + E+ V+G Y SGHPL  Y+ IL +         +E         
Sbjct: 942  TSIKHYDEFKQKIILDMEKEVMGMYISGHPLSEYEDILARRTSINNFKIKELKEDPKLLQ 1001

Query: 991  --RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    +  +VVS +   T++   + +V   +     E   FP
Sbjct: 1002 ELNDQEHIVGGIVVSSRLMTTKRNEMMAFVEIEDIFGSLEVVVFP 1046


>gi|189218920|ref|YP_001939561.1| DNA polymerase III, alpha subunit [Methylacidiphilum infernorum V4]
 gi|189185778|gb|ACD82963.1| DNA polymerase III, alpha subunit [Methylacidiphilum infernorum V4]
          Length = 1159

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1030 (37%), Positives = 575/1030 (55%), Gaps = 26/1030 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +HS YSLL+ +  + +++ K      PA+A+TD  NL+  ++F +   +  I+PI
Sbjct: 5    FVHLHLHSEYSLLDASARIKDVVSKAKQLGMPAVALTDHGNLYGTIDFYKACVSQNIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC+  I            K     +  + LL    +GY+ L++L+S+ +L +      R
Sbjct: 65   IGCEAYITSGSRFDR----KGSRSHIYHMTLLAKNNQGYKNLLKLISKAHL-EGFYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRH 189
            I L  L+E    GLI  +G  +G I +       + A+K      +LF     Y+ +Q H
Sbjct: 120  IDLELLKE-HKAGLIGTSGCMNGEIPQKILEGDLKGAKKLAEELSRLFDPNCFYLEIQNH 178

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +       +   A +  LPLVATN+  ++ +ED + HDVL+ +  ++ +    R + 
Sbjct: 179  GLKEEKEIREVLADFAQSLGLPLVATNDVHYVEQEDAQFHDVLLCIGTASQIHDPKRKKY 238

Query: 249  TPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 Y K   +M  +F++ P+A+ENT  IAR C   +++     P +         K  
Sbjct: 239  PCPEFYFKTPQQMAELFNEFPQAVENTANIARLCDVTIELGKNHFPSYTLPSPY---KTH 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     GL+             ++  ++RL++EL+VI +  FS YFLIV DFI +A
Sbjct: 296  GEYLRTLCYEGLQK-------RYDNISEQIKERLEYELSVIEQTGFSSYFLIVWDFIHYA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            KK  IPVGPGRGS AGS+TAY L ITDIDP+++ L+FERFLNP R+S PD DIDFC +RR
Sbjct: 349  KKEGIPVGPGRGSAAGSLTAYVLGITDIDPIKYGLVFERFLNPQRVSPPDIDIDFCYNRR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +VI YV+ KYG   VAQIITFG+L AK A+RDV R L M Y + DR+ K+IP DP   +
Sbjct: 409  SQVIDYVRKKYGERSVAQIITFGTLGAKMAVRDVARVLGMSYQEADRIAKMIPPDPQLTL 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                   + +  +    DP    +L I+ KLEGL R A  HAAG+VI +  L   +P+ R
Sbjct: 469  ERAR-ELNPQLDQLWENDPQSREVLTIATKLEGLTRQAGVHAAGVVISEGDLLDFIPLSR 527

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDH 606
               ++  VTQ++M+ I + GL+K DFLGLKTLT++ + L  + ++    +D    P DD 
Sbjct: 528  GEHNE-IVTQWSMEPIAEIGLLKMDFLGLKTLTVISECLALIKEKENILLDPKQFPLDDK 586

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             TY LL    T+G+FQLESSGM + ++ ++P  IEDIIALV+LYRPGP++NI  Y +RK 
Sbjct: 587  NTYELLGRGQTIGVFQLESSGMVELVKKLKPGNIEDIIALVALYRPGPMENIPAYADRKL 646

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            GK  I   HPL++P+LK+T GV+IYQEQVMQ A +L+GYSL E+D+LRRAMGKK  EEM 
Sbjct: 647  GKVPITYDHPLLEPILKDTYGVMIYQEQVMQAANVLAGYSLGESDLLRRAMGKKKPEEMR 706

Query: 727  KQKERFISGASKNGI-SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            KQ+++FI G  +     +  A+ IFE L KFA YGFNK+H+A Y  ++Y TA++K +YPV
Sbjct: 707  KQRDQFIKGCKEKNNIPEEKAIQIFETLEKFAGYGFNKAHSACYGYLAYVTAYLKANYPV 766

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             +L   ++ E  + EKI+    + R+  I ++PP ++   V F V    I + L+AIK V
Sbjct: 767  FYLCTLLSYESGDTEKIELLVSECRRMGIGVLPPDISKSEVRFSVEGGSIRWGLSAIKNV 826

Query: 846  GTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            G   A  I+E+      + SL D C R+  + LN+++LESL+ +GA D  G SR +LL+S
Sbjct: 827  GEAAAEAIVESRKKRGSYHSLFDLCLRISGRTLNKKILESLIKSGACDSLGRSRKELLES 886

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEK-GTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
            L           K R +  +N+F        +D+ +  K      ++R   E+ +LG Y 
Sbjct: 887  LPAALSAGSITSKERLSGQQNLFEEHNFIDPTDRQSSAKGEDYPLNIRLHWEKELLGTYL 946

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT-RKGSRIGWVTFSE 1022
            S HPLD +   +R    +           + + +  M+   ++K + +       +   +
Sbjct: 947  SSHPLDEWMSWIRLFQNEPISSLKELADNSRLYVPGMITHIEKKTSQKSKKPYFKLILED 1006

Query: 1023 PAKEYEANFF 1032
                 E   F
Sbjct: 1007 QTGHIEVILF 1016


>gi|90580986|ref|ZP_01236787.1| DNA polymerase III subunit alpha [Vibrio angustum S14]
 gi|90437864|gb|EAS63054.1| DNA polymerase III subunit alpha [Vibrio angustum S14]
          Length = 1159

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1048 (38%), Positives = 613/1048 (58%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL+VHS YS+++G   +  I+ K +    PA+A+TD  NL   ++F   A  
Sbjct: 1    MAE-PRFIHLRVHSDYSMIDGLAKVKPIVKKASELSMPALAMTDFTNLCGLVKFYFAAHD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q       +  + +L +  EGY+ L  L+S  Y    
Sbjct: 60   AGIKPIIGADFKV----------QSAEMGDELFELTILAANNEGYKNLTLLISEAYQRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I   WL     EGLI+L+GG +G + +A    + ++ +  +  ++  F D  Y+
Sbjct: 110  VQHLPVIDKEWLVN-HREGLIILSGGKNGDVGKALLKGNQKMVDGLVAFYQTHFPDSYYL 168

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     +       V+LA   +LP+VATN+   L+ + ++AH++ +A+     +   
Sbjct: 169  ELVRTGRADEEAYLHFAVELAEKADLPVVATNDVRLLTADQFDAHEIRVAIHDGYTLVDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +RP+  +   YL++  EM  +F+D+PEAL+N+VEIA+RC+  +++       +       
Sbjct: 229  NRPKLYSAQQYLRSEEEMCELFADIPEALQNSVEIAKRCNVTVRLGE-----YFLPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTIEDFLIAKSKEGLEERLEFLFPDPEVRAARRPEYDERLDIELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC D+RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  IDFCMDKRDLVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   + +  +A  AD  V  L+++ + LEG+ R+A  HA G+VI    +
Sbjct: 464  PAEPGMTL-AKAFDAEPQLGQAYDADEEVRDLIDMCRILEGVTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPLYCDAEGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALALINPRLIEQGKE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V+++ IP DD +++ +L    +  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PVNIAAIPMDDPKSFAMLQRSESTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E +        H  +  +L  T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAVSYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  G+ KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRAVFEEGSIKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +KI     +  +  ++++PP VN     
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKIISLVDECHRMKLKLLPPDVNKGLYR 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  + Y + A+KGVG     +I+ A      F  L DFC+R+D+KK+N+RVLE L
Sbjct: 823  FNVDEDGAVVYGIGAVKGVGEGPIENIISAREKGGHFKDLFDFCARIDTKKVNKRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA+D  G +R  +L +LD+  K A    +       ++F        + +       
Sbjct: 883  IKSGAMDRLGPNRAAMLATLDDAIKAASQHHQAEAFGQADMFGVLTAAPEEVENKYANIP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   L+       +++  T R     +A +V++ 
Sbjct: 943  EAPDKVWLEGERETLGLYLTGHPINAYLSELKHYTTWRLKDAQQTGRDKVATVAGLVIAA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1003 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1030


>gi|317485419|ref|ZP_07944298.1| DNA polymerase III [Bilophila wadsworthia 3_1_6]
 gi|316923378|gb|EFV44585.1| DNA polymerase III [Bilophila wadsworthia 3_1_6]
          Length = 1175

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1046 (38%), Positives = 602/1046 (57%), Gaps = 34/1046 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              FVHL  H+ YSLL+GA+ LN++  +      PA AITD  NL+ A  F     + GI+
Sbjct: 2    SEFVHLHCHTEYSLLDGAIRLNDLCARAKDFGMPAAAITDHGNLYGAAYFYTTCKSYGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            P+IGC++ +      K +   +        ++LL    EGY  L+ LVS+ +L D     
Sbjct: 62   PVIGCEVYVTKDHRDKDSEFSRVR----HHLILLAKNNEGYHNLVRLVSKGFL-DGFHYK 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF--------FNSSQVAEKRLLTFKKLFGD 180
             R+  + L++  +EGLI L+   +G I R             +   A ++   +  ++  
Sbjct: 117  PRVDKALLRQ-HSEGLIALSACLAGEIPRTLMGANKLITNGGTFDDAIRQTQEYMDIYDG 175

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            R Y+ +Q +   D+    +++++LA   ++PLVATN+  +L+ +D EAHDVL+ +     
Sbjct: 176  RFYLEVQANTLPDQATLNNKLLELAEHTKVPLVATNDCHYLNADDVEAHDVLLCIQTQAK 235

Query: 240  VSQKDRPRVTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            V+   R R            EM   F  +PEAL NTV IA  C   +       P +   
Sbjct: 236  VNDAKRMRFEARDLYYKSAEEMEQAFKHIPEALSNTVRIAEECHVEMDFTHHYFPVYELP 295

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E   +      E +  A  GL+ RL           + Y  RL+ EL VI  M F GYFL
Sbjct: 296  EGMTLST----EFQRLAREGLKQRLELHPDRDTIDPKIYWDRLEMELKVICEMGFPGYFL 351

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK N+IPVGPGRGS AGS+ A+AL IT++DPL ++L+FERFLN +R+S+PD 
Sbjct: 352  IVQDFINWAKGNDIPVGPGRGSAAGSIVAWALRITNLDPLPYNLIFERFLNIERVSLPDI 411

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC+D+R  VI+YV  KYG + V+QI TFG ++AKA +RDVGRAL M + + DR+ KL
Sbjct: 412  DVDFCEDKRTRVIQYVSQKYGIDSVSQITTFGKMKAKAVVRDVGRALDMSFKETDRIAKL 471

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP+D    +  +A+  +         D  + +L++IS +LEGL RHASTHAAG+V+ D+P
Sbjct: 472  IPDDLKMTIK-KALDAEPELATLYKEDQIIRKLIDISMRLEGLSRHASTHAAGVVVSDKP 530

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVD 597
            + + +P+YR  +    VTQF+MK +EK GL+KFDFLGL+T+TL+  +L  + ++     +
Sbjct: 531  MDEYLPIYRG-KKGELVTQFDMKMVEKVGLVKFDFLGLRTMTLIDNTLKAIEEQGKKAPN 589

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L ++P  D +TY + +   T G+FQ+ESSGMRQ L  ++P+C EDIIA+++LYRPGP+ +
Sbjct: 590  LDILPLTDPDTYDVFSRGDTDGVFQVESSGMRQYLRMLRPNCFEDIIAMLALYRPGPLGS 649

Query: 658  IVVYNNRKNGKEKIV--SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V    K    ++      P ++  LK+T GVI+YQEQVMQIAQ+++GY+L  AD+LRR
Sbjct: 650  GMVDEFIKRKHGEVDVTYPLPSLEGCLKDTYGVIVYQEQVMQIAQIVAGYTLGGADLLRR 709

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  E M K++  F+ GA KNG SK  A  IF+L+ KFA+YGFNKSH+AAYA+ISY 
Sbjct: 710  AMGKKNAEAMAKERTLFVDGAVKNGTSKEKATEIFDLMEKFAEYGFNKSHSAAYALISYH 769

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++KTH+ VEF+AA +T E+ N +KI K+    +  +I++  P V     +F V D  +
Sbjct: 770  TAYLKTHHKVEFMAALLTSEIGNQDKILKYIAACKDNDIEVRQPDVQVSRREFIVRDEAV 829

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y L  IK VG    R I+ A   D PF S  D C RV  +K+ +RVLESL+  GALDCF
Sbjct: 830  VYGLGGIKNVGDEAIREIVAAREKDGPFLSFLDLCIRVSLRKVTKRVLESLIKGGALDCF 889

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--------KITLEKFSVE 946
            G SR  ++ ++D +   AQ   K + +   ++         +            E  S  
Sbjct: 890  GCSRAAMVAAIDPVVARAQKKIKEKQSNQISLLTLSPKKIEENQASGIGFSCEEESISEW 949

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            +   +   E+  LGF+ + HPL  Y+  L ++ ++  E+         I+ A +V S ++
Sbjct: 950  DEDQKLRFEKEALGFFLTSHPLQPYRHELNRLDLRPLEDCREMADKATIKCAVLVTSIRE 1009

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
               ++G+R+ +V   +     E  FF
Sbjct: 1010 ILNKRGNRMAFVAVEDLTASGEVTFF 1035


>gi|217977860|ref|YP_002362007.1| DNA polymerase III, alpha subunit [Methylocella silvestris BL2]
 gi|217503236|gb|ACK50645.1| DNA polymerase III, alpha subunit [Methylocella silvestris BL2]
          Length = 1152

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 537/1042 (51%), Positives = 710/1042 (68%), Gaps = 21/1042 (2%)

Query: 5    LEKSPS-----FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
            + +  +     FVHL VHSS+SL EGA+ +  +    AAD  PA+AITD NNLF ALEFS
Sbjct: 1    MSQKSAEAGLGFVHLHVHSSFSLREGAMGIGKLAKLAAADHMPALAITDGNNLFGALEFS 60

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            +K    G+QPIIG +L +D +D   ++ +G+       SIVL+     GY  L+ LVSR 
Sbjct: 61   EKLAKEGVQPIIGAELTLDFRDGAAISARGEELGAGRASIVLIAKDEAGYLNLMHLVSRA 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +L  +      + +  L    T G+I L+GG +GP+DRAF    S+ A  R     +LF 
Sbjct: 121  WLDPEPGDPPHVPIERL-RGRTGGMIALSGGPAGPLDRAFAARRSEQAFARAAQLAELFP 179

Query: 180  DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            DRLY+ LQRH    +R  E +++ LAY   LPLVA N   F +  DYEAHD L+ +A  T
Sbjct: 180  DRLYIELQRHNLAAEREAEPRLLDLAYRKSLPLVAANEPYFGTSSDYEAHDALICIAEGT 239

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            V+    R +++P+H  K R+EMV++F+DLPEA  NTVEIARRC+F      P+LPRF   
Sbjct: 240  VIGDGARRQLSPEHRFKTRAEMVALFADLPEASRNTVEIARRCAFRPLTRKPLLPRFSA- 298

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  + E + LR++A AGLE R+    +AKG+ A+DYR+RL FEL+VI +MKF GYFL
Sbjct: 299  --TGELEAEADALRSEAEAGLEARIEAHGLAKGFTAEDYRKRLAFELDVIVKMKFPGYFL 356

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV+DFI++AK   IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R+SMPDF
Sbjct: 357  IVSDFIKYAKSQGIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPERVSMPDF 416

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFCQDRRDEVI YV+ +YG ++VAQIITFGS  A+  LR+VGR L+MP  QVDRL KL
Sbjct: 417  DIDFCQDRRDEVIAYVRRRYGADKVAQIITFGSFLARGVLRNVGRVLEMPLGQVDRLAKL 476

Query: 479  IPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +P +PA PVS  QAI  + R +EA  A+P V ++L+I+Q LEGLY +ASTHAAGIVIGDR
Sbjct: 477  VPQNPAAPVSLKQAIDSEPRLKEAAEAEPRVAKMLQIAQTLEGLYSNASTHAAGIVIGDR 536

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            PL QLVP+YRD +SD+P TQFNMKW+E AGL+KFDFLGLKTLT L   +  L +RG++++
Sbjct: 537  PLEQLVPLYRDPKSDMPATQFNMKWVEPAGLVKFDFLGLKTLTTLSTCVKLLRRRGIEIE 596

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP DD +TY +L    T+G+FQLES+GMR+AL  M  D  EDIIALV+LYRPGP+ N
Sbjct: 597  IDKIPLDDSKTYAMLGRGETIGVFQLESAGMRRALVDMHADRFEDIIALVALYRPGPMAN 656

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y   K G+E+   IHP I+ +LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAM
Sbjct: 657  IPRYCAVKAGEEEADYIHPKIEGVLKETFGVIIYQEQVMQIAQILSGYSLGEADLLRRAM 716

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKKIK EMD Q++RF+ GA  NG++K  A  IF+LLAKFADYGFNKSHAAAYA+I+YQTA
Sbjct: 717  GKKIKAEMDAQRDRFLRGAIDNGLAKAKANEIFDLLAKFADYGFNKSHAAAYALIAYQTA 776

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GD 832
            W K +YP+EFLAASMTL+  N +K+ +F  +AR+ N  + PPS+     DF+V     G+
Sbjct: 777  WFKANYPLEFLAASMTLDKANTDKLAEFSNEARRLNGAVEPPSIQRSGADFEVCANDAGE 836

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             +I Y+L AIKGVG   A  ++ A   KPF    DF +R+D + +N+R+LESLV AGA D
Sbjct: 837  LQIRYALGAIKGVGQGHAEALVAARNSKPFRDFADFSARIDPRAINKRMLESLVAAGAFD 896

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                 R ++  +++ I   A   ++ R      +F        D++ L K +    + R 
Sbjct: 897  EMEPDRARVFAAIETILASAHRRDEERRAGQSALFG---AGAEDRMPLPKVAPWTLAERL 953

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNN-IRLAAMVVSKQQKKTR 1010
              E   +GF+ SGHPLD Y  I+ ++ ++ + E    ++ G    RLAA V+ +Q+++T+
Sbjct: 954  RREFDSVGFFLSGHPLDAYATIMSRLRVQRWTEFSRAVKLGATGGRLAATVLDRQERRTK 1013

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
             GS++G V  S+P+ +YEA  F
Sbjct: 1014 SGSKMGIVQLSDPSGQYEAILF 1035


>gi|262044745|ref|ZP_06017792.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
            ATCC 13884]
 gi|259037895|gb|EEW39119.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
            ATCC 13884]
          Length = 1160

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1049 (40%), Positives = 613/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      
Sbjct: 1    MAE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTGHV 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G    +          Q          + +L +   GYQ L  L+SR Y    
Sbjct: 60   AGIKPIVGADFHV----------QCDLLGDEFTELTVLAANNTGYQNLTLLISRAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E   EGLI+L+GG  G +  +    +  + E+ +  +++ F DR ++
Sbjct: 110  GALGPWIDRDWLVE-HQEGLILLSGGRKGDVGVSLIRGNMPLVEQCVAFYEEHFPDRYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  FL   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRQDEEAYLHAAVALAEARGLPVVATNDVRFLDTSDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y QRLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDFLVMKSKEGLEERLEFLFPDPAVRAEKRPEYDQRLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D +   PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523  TDFAPLYCDEQGLHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEG 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA  +   F  L D C+R D KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|163750366|ref|ZP_02157606.1| DNA polymerase III subunit alpha [Shewanella benthica KT99]
 gi|161329856|gb|EDQ00842.1| DNA polymerase III subunit alpha [Shewanella benthica KT99]
          Length = 1157

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1047 (39%), Positives = 590/1047 (56%), Gaps = 37/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   PSFVHL+VHS +S+ +G   +  IL K+     PA+A+TD  NL   ++F     +
Sbjct: 1    MSD-PSFVHLRVHSDFSMSDGLAKVKPILAKVTELGMPAVALTDQTNLCGLVKFYGACHS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG    +          Q         +I +L  T EGY  L  L+S  YL   
Sbjct: 60   AGVKPIIGADFWM----------QVPGFDKEFCAITVLAMTNEGYSNLTLLISDAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K    I   WL +  ++GL++L+GG  G + RA    +       +  ++  F DR Y+
Sbjct: 110  IKDKAVIDQGWLAKY-SKGLLLLSGGRQGDVGRALLNGNHGQVASLIEFYRTHFPDRYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA   +LP+VATN  +F   E +EAH++ +A++    ++  
Sbjct: 169  ELLRTGRPDEETYLHLAVALAQEKDLPVVATNQVVFNGPEFFEAHEIRVAISDGFTLADP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   Y K   EM  +F D+PEA+ NTVEIA+RC+  +++               
Sbjct: 229  RRPKKYSEQQYFKTSEEMCELFQDIPEAIANTVEIAKRCNVTVRLGEYF-----LPNFPT 283

Query: 303  IQKEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L   +  GLE     L      +      Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDLSIEDFLVKVSKDGLEDRLEFLFPDPEVRAQKRPRYDERLDIELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW K  NIP+GPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWGKDQNIPIGPGRGSGAGSLVAYSLNITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ K++
Sbjct: 404  IDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   +   +E+   D  V  L+++ + LEG+ R+A  HA G+VI    +
Sbjct: 464  PAEPGMTL-AKAFEVEPALQESYDGDEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV----- 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  +       
Sbjct: 523  TDFAPIYCDSEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPKRKELGKE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD + + LL    T  +FQLES GM+  ++ +QPD  ED+IALV+L+RPGP
Sbjct: 583  PVRIESIPLDDKKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGP 642

Query: 655  IDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V N  +                H  +  +L+ T G+I+YQEQVMQIAQ+L+GYSL
Sbjct: 643  LQSGMVDNFIERKHGREVVSFPDAEYQHESLRWVLEPTYGIILYQEQVMQIAQVLAGYSL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NGI   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRGTFKEGAINNGIDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA M+ +MDN +KI     +  +    ++PP VN   + 
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMSADMDNTDKIVILVDECERMGQPLLPPDVNKGLLK 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F V  + +I Y + AIKGVG      I+ A  + PF  L DFC+RVD KKLN+R++E L+
Sbjct: 823  FTVDEEGKIVYGIGAIKGVGDGPVESILAARKNGPFKDLFDFCARVDLKKLNKRIMEKLI 882

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945
            FAGALD  G  R  ++ +L    + A    K       ++F        D K    + + 
Sbjct: 883  FAGALDSLGPHRAAMMATLPEAVRAADQNAKAEAIGQHDMFGLLNSDVEDIKQQFVQCTP 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                V  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +V++ +
Sbjct: 943  WPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVIATR 1002

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++GS++G VT  + +   E   F
Sbjct: 1003 VMLTKRGSKMGLVTLDDKSARLEVMLF 1029


>gi|295098673|emb|CBK87763.1| DNA polymerase III, alpha subunit [Enterobacter cloacae subsp.
            cloacae NCTC 9394]
          Length = 1160

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1049 (40%), Positives = 616/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F   A  
Sbjct: 1    MAE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PI+G    +          Q +     +  I +L     GYQ L  L+S+ Y    
Sbjct: 60   AGLKPIVGADFHV----------QSELLGDEMTQISVLAMNNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGL++++GG  G + +     ++ + ++ +  +++ F DR Y+
Sbjct: 110  GALGPWIDRDWLAEL-NEGLLLISGGRMGDVGKCLLRGNNALVDQCVSFYEEYFPDRYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  FL   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRADEESYLHAAVALAEARGLPVVATNDVRFLEPGDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +   Y+++  EM  +FSD+PEALEN+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSSQQYMRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDFLVMKSKEGLEERLEFLFPDEAVRKEKRPEYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K    
Sbjct: 523  TDFAPLYCDEAGQHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSIFEDGAKKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA  +   F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYSNCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGHRLKDMHPTERGKITTAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|291166424|gb|EFE28470.1| DNA polymerase III, alpha subunit [Filifactor alocis ATCC 35896]
          Length = 1151

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1055 (34%), Positives = 596/1055 (56%), Gaps = 48/1055 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +E+   F HL +H+ YSLL+G  ++ + + K   D   A+AITD   +F  +EF + A  
Sbjct: 1    MERK--FTHLHLHTPYSLLDGFATIEDTIKKAKEDGMDAVAITDHGVMFGVVEFYKVALN 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIGC++ +  +      N  K        ++LL     GYQ LI+LVS  + ++ 
Sbjct: 59   YGIKPIIGCEVYVSYRTRFDKENIDKRS----YHLILLAENNTGYQNLIKLVSLGF-VEG 113

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 R+ +  L+   +EG+I L+   +G + ++   N+ + A+K    ++++FG D  +
Sbjct: 114  YYYKPRVDIDLLKSY-SEGIIALSACLAGEVQQSLLNNNYEEAKKVACRYREIFGEDNFF 172

Query: 184  VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ H   ++      + +L+    +PLVATN+  +++  D + HD+L+ +     +  
Sbjct: 173  LELQNHGIEEQLKVNHLLRRLSLDTGIPLVATNDVHYVNRSDSKNHDILLCIQTGKTLDD 232

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            KDR    T   Y K R EM  +FS   +AL NT +I++RC+     +   LP F      
Sbjct: 233  KDRMEFKTDQFYFKTREEMYQLFSKDEDALLNTWKISQRCNVSFDFNVIHLPEFQVPHH- 291

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                 +E         GL+ R               R+R ++E  VI +M +  YFLIV 
Sbjct: 292  ---YTKEQIFDELCERGLQERYFD-------ITPPIRERFEYEKKVIKKMGYVEYFLIVQ 341

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+++KKNNI VGPGRGS AGS+ +Y L ITD+DP+++ LLFERFLNP+R+SMPD DID
Sbjct: 342  DFIRFSKKNNIMVGPGRGSAAGSIISYCLQITDVDPIKYHLLFERFLNPERISMPDIDID 401

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC ++R++VI YV+ KYG + VAQIITFG+  AKAA+RDVGR L + Y++VD++ K IP+
Sbjct: 402  FCYEKREQVIDYVKEKYGEDHVAQIITFGTFGAKAAIRDVGRVLGISYAEVDKIAKQIPD 461

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +  +A+  +S  ++  ++D +V  +++ ++++EGL RHASTHAAG+VI    +  
Sbjct: 462  NLGMTIE-KALEMNSELKKMYVSDNNVRNIIDFAKRIEGLPRHASTHAAGVVISKNTMDY 520

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
             VP+Y     DL  TQF M  +E+ GL+K DFLGL+TLT++QK+L+ + +    K+D S 
Sbjct: 521  YVPLYM--HKDLIATQFPMTTLEELGLLKMDFLGLRTLTVIQKTLEAIEKIYNKKIDFSK 578

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +  ++   + LL+   TLG+FQLES GMR  L+ ++PD  EDI+A +SLYRPGP+++I +
Sbjct: 579  MDTNNTRVFQLLSNGNTLGVFQLESPGMRSFLKELRPDTFEDIVAGISLYRPGPMESIPI 638

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y   KN    I  +H  + P+L+ T+G+++YQEQVMQI + L+GYS + AD++R+AM KK
Sbjct: 639  YIENKNNSNHISYLHESLKPILEVTKGIMVYQEQVMQIVRSLAGYSYARADLVRKAMSKK 698

Query: 721  IKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
              + M++++E F+             G  +NGI + IA  I++ +  FA Y FNKSHA  
Sbjct: 699  KMDVMEEEREYFVYGKISGSGDIEISGCVRNGIPEKIANQIYDEMIDFAKYAFNKSHAVC 758

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+++Y+TA++K  YP  F+A+ MT   D  +K+ ++ ++    NI I+ P +N     F
Sbjct: 759  YAMLAYETAYLKAFYPSCFMASLMTSVSDRSDKVIEYIRECADLNICILKPDINRSNSYF 818

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V  + I Y+LA+IK +G      I++    +  F S EDF  R+  K +++R +ESL+ 
Sbjct: 819  SVEGDHIRYALASIKNIGIKAIDDIVQERNKNGEFQSFEDFIKRIPQKNISKRFVESLIK 878

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVE 946
            AG  D    +R  L+   + +       +K+       +F++++   +  +      S  
Sbjct: 879  AGCFDSIHPNRASLVAGYEKVMDIVHSQKKHSIQGQVTLFSNQEALPNQNLNFFPHISDF 938

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILR-KMGIKGYEESVATI-------RGNNIRLA 998
            +   +   E+  +G Y SGHPLD Y+ +++    I   +                 I + 
Sbjct: 939  SIKEKLYMEKETIGLYLSGHPLDEYQDVIKDDTNIVSIDSIKNIPSHQKSEIEKKKIVIV 998

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              ++SK  K T++   + ++T  + +   E   FP
Sbjct: 999  GTILSKMIKYTKQNKIMCFLTIEDFSGSLEVLIFP 1033


>gi|53804349|ref|YP_113748.1| DNA polymerase III subunit alpha [Methylococcus capsulatus str. Bath]
 gi|53758110|gb|AAU92401.1| DNA polymerase III, alpha subunit [Methylococcus capsulatus str.
            Bath]
          Length = 1165

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1043 (40%), Positives = 613/1043 (58%), Gaps = 31/1043 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL++H+ YSL++G + +  ++ +++    PA+A+TD  NLF+ ++F + A  AGI+
Sbjct: 3    PKFVHLRIHTEYSLVDGIVRIKPLVKRLSEFGMPAVAVTDQCNLFALVKFYKAAMGAGIK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  + +          Q      +   + LLV   EGY  L EL+SR Y  +Q +  
Sbjct: 63   PIAGADVWL----------QNPQDVSSPHRLTLLVQNQEGYLALTELISRSYQENQHQGV 112

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +   WL +    GLI L+GG  G I  A    S   A +    +  +F DR Y+ + R
Sbjct: 113  PMLMPEWLADCNA-GLIALSGGRDGAIGHALLAGSGAEATRLAEYWGGMFRDRFYLEVCR 171

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                 +       V+LA   +LP+VATN+  FLS +++EAH+  + +    V+    RPR
Sbjct: 172  TGRANEERYIDAAVELAACLDLPVVATNDVRFLSAKEFEAHEARVCIHQGRVLDDPRRPR 231

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   YL++  EM+S+F+DLPEALEN+VEIARRC+  L +    LP F           
Sbjct: 232  DYSEQQYLRSEEEMLSLFADLPEALENSVEIARRCNLGLTLGKNFLPDFPVPAGMTPDDF 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               + R      L VR   GA       Q Y  RL+ EL+VI  M F GYFLIVADFIQW
Sbjct: 292  FSEQSRQGLKERLAVRPPSGAGTLEERTQRYWCRLELELSVIREMGFPGYFLIVADFIQW 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IPVGPGRGSGAGS+ AYAL ITD+DP+ F LLFERFLNP+R+SMPDFD+DFC +R
Sbjct: 352  AKSQGIPVGPGRGSGAGSLVAYALKITDLDPIEFDLLFERFLNPERVSMPDFDVDFCMER 411

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV  KYG ++V+QIIT+GS+ AKA +RDVGR L  PY  VDR+ KLIP +    
Sbjct: 412  RDEVIDYVARKYGRDKVSQIITYGSMAAKAVVRDVGRVLGHPYGFVDRIAKLIPFELGIT 471

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +S +A+ D    R++   D  V  LL+++Q LEG+ R+   HA G+VI    L    P+Y
Sbjct: 472  LS-KALEDSEELRKSYEEDEEVRALLDLAQSLEGITRNPGKHAGGVVIAPSRLIDFSPLY 530

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----KVDLSLI 601
             +      VTQF+   +E  GL+KFDFLGL+TLT++  +L  +  +        VD++ I
Sbjct: 531  CEPGGGNLVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWALADINAKRRAAGEEPVDINRI 590

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV-- 659
            P DD +TY LL    T  +FQLES GM+  ++ ++PDC EDIIALV+L+RPGP+ + +  
Sbjct: 591  PLDDPKTYELLGRCATTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVD 650

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y N K+G+ K    HP+++P+LK T GVI+YQEQVMQIA+ ++GY+L  AD+LRRAMGK
Sbjct: 651  DYINVKHGRTKAEYPHPVLEPILKPTNGVILYQEQVMQIARDMAGYTLGGADLLRRAMGK 710

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM KQ+E FI+GA++ GI  +I+ +IF+L+ KFA YGFNKSH+AAYA++SYQTAW+
Sbjct: 711  KKPEEMAKQREIFIAGATRQGIDPSISSHIFDLMEKFAGYGFNKSHSAAYALVSYQTAWL 770

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYS 838
            K HYP EF++A ++ +MDN +K+     + R+  + I+PP +N     F V G   I Y 
Sbjct: 771  KAHYPAEFMSAVLSADMDNTDKVVVLIDECREMKLSILPPDINLSEYRFTVRGRREILYG 830

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L A+KGVG T    I++    + PF  L D C R+D +K NRRVLE+++ AG  DCF  +
Sbjct: 831  LGAVKGVGQTAIDDILQERKNNGPFTDLLDLCRRIDLRKANRRVLEAMIRAGVFDCFDRN 890

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFSDKITLEKFSVENSSVRFE 953
            R  L  +L ++ K A+          +++F           S  +   +      + R  
Sbjct: 891  RAALFAALPDVVKAAEQQGAMSAAGQDDLFGGFTAESPAASSAGLVATEIEPWAEAERLA 950

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----NNIRLAAMVVSKQQKKT 1009
             E+  LG Y +GHP+  ++  L ++        +    G      + +A ++V  + + T
Sbjct: 951  QEKATLGLYLTGHPITPHERELEQIVTSRLGPLMGEGEGGRGDTRVVVAGLIVDIRTRLT 1010

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
            R G ++G+++  +     E   +
Sbjct: 1011 RSGQKMGFLSLDDRTGRMEIAVY 1033


>gi|304414199|ref|ZP_07395567.1| DNA polymerase III alpha subunit [Candidatus Regiella insecticola
            LSR1]
 gi|304283413|gb|EFL91809.1| DNA polymerase III alpha subunit [Candidatus Regiella insecticola
            LSR1]
          Length = 1160

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1049 (40%), Positives = 609/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VHS YS+++G    + ++ K A+   PA+AITD  NL   ++F   A A
Sbjct: 1    MTD-PRFIHLRVHSDYSMIDGLAKTSALVKKAASLGMPALAITDFTNLCGLIKFYSSAQA 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q K     +  + +L    +GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIIGADFYL----------QSKLLDDELAQLTILARNQQGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL    +EGLI+L+GG SG + +     +     + L  +++ F D  Y+
Sbjct: 110  GASGPLIDRDWLI-THSEGLILLSGGRSGDVGKFMLRGNQTQMLECLAFYQQYFADNYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        + LA  H++P+VATN+  F+   D+EAH++ +A+     ++  
Sbjct: 169  ELIRTGRPDEENYLRGAIALASQHDIPVVATNDVRFIDTSDFEAHEIRVAIHDGATLADT 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  +++N  EM ++FSD+PEAL N++EIA+RC+  +++       +   +   
Sbjct: 229  KRPKNYSPQQFMRNEQEMCALFSDIPEALTNSIEIAKRCNLSIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLI 359
                 E+    KA  GLE RLA          Q    Y +RL+ E+ VI +M F+GYFLI
Sbjct: 284  GAMSTEDFFAEKAQLGLEERLAFLFPDVNTKKQRRAAYDERLNVEIKVINQMGFAGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDIDPLAFDLLFERFLNPERISMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC ++RD+VI +V N YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  IDFCMEKRDQVIEHVANIYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P D    +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PLDVGMTLE-KAFAAEPQLAELYQADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  +       
Sbjct: 523  TDFSPLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWTLVMINAQQASKGLP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP DD +++ LL    T  +FQLES GM+  ++ ++PDC EDIIALV+L+RPGP
Sbjct: 583  SIDITTIPLDDKKSFALLQRAETTAVFQLESKGMKDLIKRLKPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H L+ P+L+ T G+I+YQEQVMQIAQ+LSGYSL
Sbjct: 643  LQSGMVDNFIDRKHGREALSYPDIQWQHELLKPVLEPTYGIILYQEQVMQIAQVLSGYSL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F +GA + GI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKDPVEMAKQRSIFENGAKQQGIDGELAIKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+A  MT +MDN +K+     +  +  ++++ P +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAGVMTADMDNTDKLVGMVDECIRMGLKVLLPDINSGSYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+ A  A   F  L D C+R ++KKLNRRVLE L
Sbjct: 823  FNVNDDGEIVYGIGAIKGVGEGPITAILNARQAGGHFKDLFDLCARTETKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+ SL+   K A    K      +++F    G+    + +    +
Sbjct: 883  ILSGAFDRLGPHRASLMHSLETALKAADQHAKAEAIGQKDMFGVLTGSPEQVEHSYANIA 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 +  E E+  LG Y +GHP+  Y   L +  G    ++   T RG    +A +V++
Sbjct: 943  PWQEQIVLEGERETLGLYLTGHPITQYLKELERYSGGIRLKDLHVTERGKTTTVAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVIVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|300088655|ref|YP_003759177.1| DNA polymerase III subunit alpha [Dehalogenimonas
            lykanthroporepellens BL-DC-9]
 gi|299528388|gb|ADJ26856.1| DNA polymerase III, alpha subunit [Dehalogenimonas
            lykanthroporepellens BL-DC-9]
          Length = 1211

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1041 (36%), Positives = 579/1041 (55%), Gaps = 38/1041 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ +SLL+G   +  ++ +       A+AITD   ++ AL+F ++  A  I+PI
Sbjct: 2    FTHLHVHTEFSLLDGMCRIPALVHRAKELGMTALAITDHGTMYGALKFYRECLAQDIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +     L  T  GK        +VLL     GY+ L++LVS     +      R
Sbjct: 62   IGCEVYVAPGSRLDKTPAGKNHR----HLVLLARNNTGYRNLLQLVSLANT-EGFYYKPR 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    L +   EGLI L+   SG + R    N    A +    ++  F    Y  +QRH 
Sbjct: 117  VDREILAKY-REGLIALSACPSGEVPRLILENRLSEARETAEWYRDNFDGDFYFEIQRHP 175

Query: 191  GYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              +     + ++ L+   ++PLVAT ++ ++  ED + HD+L+ +    +V    R ++ 
Sbjct: 176  MPEFDRINNALIDLSRELDIPLVATGDTHYVRREDAQTHDLLLCIGTGAMVKDTSRMKMQ 235

Query: 250  -PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                YLK+ +EM  ++ D+PEALENT  IA +C   L+     LP+             +
Sbjct: 236  ADSFYLKSEAEMAELYRDIPEALENTNRIADKCDLKLEFGRVHLPQIDRPAG----LTSD 291

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L       L              ++  R+RL +EL VI + +F+ YFL+V D I++ K
Sbjct: 292  EYLSQLCHEALPRLYPD-------ASEAVRERLTYELEVIEKTQFADYFLVVWDIIRFVK 344

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  G  RGS A S+    L IT++DPL ++L+FERFLN +R  MPD D+DF  DRRD
Sbjct: 345  ERGIYFG-VRGSAAASIVLRCLDITEVDPLEYNLVFERFLNIERKEMPDIDMDFQDDRRD 403

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV  KYG + VAQIITFG+L A+AA+RD GRAL +    VDR+ +LIP  P   + 
Sbjct: 404  EVIEYVSEKYGLDHVAQIITFGTLGARAAIRDTGRALGIDLPVVDRVARLIPFGPNMTLD 463

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR- 547
             +A+ +++  REA   D +V ++++ ++++ GL RHASTHAAG+VI   PL+   P+ R 
Sbjct: 464  -KALEENTELREAVAKDGTVQKIIDAARQVSGLSRHASTHAAGVVISKEPLALHAPLQRL 522

Query: 548  ------DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSL 600
                  D RSDL +TQ+ M+ I   GL+K DFLGL  L++L ++ + + QR  +  D+  
Sbjct: 523  NRESASDARSDLVMTQYPMEDIGLIGLLKMDFLGLANLSILSRAQEIIGQRHGRPLDVHR 582

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD +T+ LL+   T+G+FQLE +GMR+ ++ ++P    DI A+V+LYRPGP++ I  
Sbjct: 583  IPLDDPKTFALLSAGETMGVFQLEGAGMRRYIKELKPTHFTDIAAMVALYRPGPMEQIPR 642

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K+G+E I   HP ++ +L+ET GVI+YQEQV+ IA+  SG+SL +AD+LR+AMGKK
Sbjct: 643  FIRSKHGEEAITYPHPALEEILQETYGVIVYQEQVLFIARTFSGFSLGQADILRKAMGKK 702

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              E M KQK+ FI+GA KNG S+ +AV +F L+  FA Y FNK+HA +YA+I+YQTA++K
Sbjct: 703  NPEVMQKQKQNFIAGALKNGYSEDLAVEVFGLIEPFAGYAFNKAHAVSYALIAYQTAYLK 762

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----NRI 835
             +YPVE++AA +  + D  EK+     + R+  I ++PP +N   V+F V D       I
Sbjct: 763  ANYPVEYMAAFLATQRDVAEKVAAAAVECRRLGISLLPPDINNSDVNFSVEDSSPAGPAI 822

Query: 836  YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + LAA+K VG      ++ E  +  PF S+EDFC RVD   LNRRVLESL+ AGALDC 
Sbjct: 823  RFGLAAVKNVGEAAVTGLVAERRSGGPFTSVEDFCRRVDGACLNRRVLESLIKAGALDCL 882

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS--VRF 952
            G  R  LLQ+   +  +A+   + R +    +F    G              +++     
Sbjct: 883  G-DRATLLQNAGRLLDFAERERRIRDSGQGTLFDLFGGVAEAPPVALDLESGSATFNDIL 941

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              E+ +LG Y S HP   +   +         E    + G    LA MVV+ +  +TR G
Sbjct: 942  AWEKDLLGLYVSAHPFSRFVGKVDHDTTALCGEITEEMEGQTTTLAGMVVAVRLAQTRDG 1001

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
            +    V   +     E   +P
Sbjct: 1002 NTFANVELEDLNGRVEVIAWP 1022


>gi|294140019|ref|YP_003555997.1| DNA polymerase III subunit alpha [Shewanella violacea DSS12]
 gi|293326488|dbj|BAJ01219.1| DNA polymerase III, alpha subunit [Shewanella violacea DSS12]
          Length = 1157

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1047 (38%), Positives = 592/1047 (56%), Gaps = 37/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   PSFVHL+VHS YS+ +G   +  IL K+     PA+A+TD  NL   ++F      
Sbjct: 1    MSD-PSFVHLRVHSDYSMSDGLAKVKPILAKVTELGMPAVALTDQTNLCGLVKFYGACHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG    +          +       + S+ ++    +GY  L  L+S  YL   
Sbjct: 60   AGVKPIIGADFWV----------RVPGFDKDLCSVTVIAMDNDGYLNLTLLISDAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL +  + GL++L+GG  G + RA    +    +  +  ++  F DR Y+
Sbjct: 110  INDRAVIDQEWLIKY-SNGLLLLSGGRHGDVGRALLKGNKPQVDSLVEFYQTHFPDRYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN  +F S E ++AH++ +A++    ++  
Sbjct: 169  ELLRTGRPDEETYLHLAVELAQEKGLPVVATNQVVFNSPEFFDAHEIRVAISDGFTLADP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   Y K+  EM ++F D+PEA+ NTVEIA+RCS  +++               
Sbjct: 229  RRPKKYSDQQYFKSSEEMCALFEDIPEAIANTVEIAKRCSVTVRLGEYF-----LPNFPT 283

Query: 303  IQKEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L   +  GLE     L      +      Y +RLD EL VI +M F GYFLI
Sbjct: 284  GELSIEDFLVKVSEDGLENRLEFLFPDPEVRAQKRPAYDERLDIELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW K  +IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWGKDQDIPIGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ K++
Sbjct: 404  IDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   +   +E+   D  V  L+++ + LEG+ R+A  HA G+VI    +
Sbjct: 464  PAEPGMTL-AKAFEVEPALQESYDGDEEVKDLIDMCRILEGVTRNAGKHAGGVVISPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV----- 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  +       
Sbjct: 523  TDFAPIYCDSEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPKRKALGKE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD +++ LL    T  +FQLES GM+  ++ +QPD  ED+IALV+L+RPGP
Sbjct: 583  PVRIESIPLDDKKSFKLLQRYETTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  +  +L+ T G+I+YQEQVMQIAQ+L+GYSL
Sbjct: 643  LQSGMVDNFIERKHGREEVSFPDAEYQHESLKWVLEPTYGIILYQEQVMQIAQVLAGYSL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NGI   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRGTFEEGAINNGIDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA M+ +MDN +KI     +  +    ++PP VN   + 
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMSADMDNTDKIVILVDECERMGQPLLPPDVNKGLLK 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F V  + +I Y + AIKGVG      I+ A  D PF  L DFC+RVD KKLN+R++E L+
Sbjct: 823  FNVDEEGKIVYGIGAIKGVGDGPVESILAARKDGPFKDLFDFCARVDLKKLNKRIMEKLI 882

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945
             AGALD  G  R  ++ +L    + A    K       ++F        D K    + + 
Sbjct: 883  CAGALDSLGPHRAAMMATLPAAVRAADQNAKAEAIGQHDMFGLLNSDTEDIKQQFVQCTP 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +V++ +
Sbjct: 943  WPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVIATR 1002

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++GS++G VT  + +   E   F
Sbjct: 1003 VMMTKRGSKMGLVTLDDKSARLEVMLF 1029


>gi|27379977|ref|NP_771506.1| DNA polymerase III subunit alpha [Bradyrhizobium japonicum USDA 110]
 gi|27353130|dbj|BAC50131.1| DNA polymerase III alpha chain [Bradyrhizobium japonicum USDA 110]
          Length = 1167

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 525/1035 (50%), Positives = 704/1035 (68%), Gaps = 15/1035 (1%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL VHS+YSLL+G++ +  + +    D QPA+A+TDT+NLF ALEFS K   
Sbjct: 1    MPSA-GFVHLHVHSAYSLLKGSIKIGKLAELAKKDHQPALALTDTDNLFGALEFSDKMAG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GIQPI+GC+L ID  D          P      +VLL +   GY+ L+ L SR +L   
Sbjct: 60   SGIQPIVGCELAIDFGDQDPTARNAIGP----SRVVLLAAQERGYRSLMRLNSRAFLETP 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
               +  I   W  +  TEGLI LTGG  GPI  A     +++A  R      LFGDRLY+
Sbjct: 116  DSHAPFIKFDWF-DGETEGLIALTGGPDGPISLALAGGMAELAATRCERLATLFGDRLYI 174

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH    +R  ES ++ +AY   LPLVATN   F + +DYEAHD L+ +A   ++++ 
Sbjct: 175  ELQRHNIDKERRVESGLIDIAYAKGLPLVATNEPYFAATDDYEAHDALLCIAGGRLIAES 234

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE--KECD 301
            DR ++TPDH  K R+EM  +F+D+PEAL +TVEIA RCSF      PILP F        
Sbjct: 235  DRVQLTPDHRFKTRAEMAVLFADIPEALASTVEIAERCSFRPMTRKPILPFFTVGAAASS 294

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D    E  EL+ +A  GL  RL    +++G   +DY +RL FEL+VI RMK++GYFLIV+
Sbjct: 295  DAAAVEAAELKRQAEEGLANRLRVHGLSQGTTEEDYSKRLAFELDVIMRMKYAGYFLIVS 354

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK   IPVGPGRGSGAGS+ A+ALTITD+DP++F LLFERFLNP+R+SMPDFDID
Sbjct: 355  DFIKWAKSQGIPVGPGRGSGAGSLVAWALTITDLDPIKFGLLFERFLNPERVSMPDFDID 414

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR EVI+YVQ +YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P 
Sbjct: 415  FCQDRRGEVIQYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQ 474

Query: 482  DPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA PV+   AI  + + +  R  DP V R  +I+Q+LEGL RHASTHAAGIVIGDRPLS
Sbjct: 475  NPAAPVTLAAAIESEPKLQAFRDEDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLS 534

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVP+YRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  +   L  R + VDL+ 
Sbjct: 535  ELVPLYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVACKLLKPRDIHVDLAT 594

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD E+Y +L     +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPGP+ NI  
Sbjct: 595  LPIDDAESYQMLARGEVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPT 654

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y +RK+G E+   +HP+++P+LKET GVIIYQEQVMQIAQ++SGYSL +AD+LRRAMGKK
Sbjct: 655  YCSRKHGDEEPEYLHPVLEPILKETFGVIIYQEQVMQIAQVMSGYSLGDADLLRRAMGKK 714

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            I+ EMDKQ++ F++GA KNG+ K  A  IFELLAKFADYGFNKSHAAAYA++SY TA+MK
Sbjct: 715  IRAEMDKQRDIFVAGAVKNGVPKGQAETIFELLAKFADYGFNKSHAAAYALVSYHTAYMK 774

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYPVEF+AASMTL+++N +K+ +F  +A++  I++ PP++N     F+VG+  IYY+LA
Sbjct: 775  AHYPVEFIAASMTLDLNNTDKLSEFRSEAQRLGIKVEPPNINRSGATFEVGEKTIYYALA 834

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            A+KGVG      I+E    +  F SL DF +RV+ + +N+R++ESL  AGA D    +R 
Sbjct: 835  ALKGVGIQAIDQIIEERTKNGLFTSLADFAARVNPRAINKRIIESLAAAGAFDTLEPNRA 894

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            ++    D I    Q   +  T    ++F       +  I L +      + R   E   +
Sbjct: 895  RVFAGADAILAACQRAHEAATIGQNDMFGMSAD--APTIMLPQIEAWLPAERLRREYDAI 952

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIGW 1017
            GF+ SGHPLD Y  +L+++ ++ + E   A   G    ++AA VVS+ +++T+ G+++G 
Sbjct: 953  GFFLSGHPLDDYATVLKRLRVQSWAEFSRAVKTGATAGKVAATVVSRMERRTKTGNKMGI 1012

Query: 1018 VTFSEPAKEYEANFF 1032
            +  S+P   +EA  F
Sbjct: 1013 MGLSDPTGHFEAVLF 1027


>gi|291561482|emb|CBL40281.1| DNA polymerase III catalytic subunit, DnaE type [butyrate-producing
            bacterium SS3/4]
          Length = 1159

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1046 (36%), Positives = 573/1046 (54%), Gaps = 39/1046 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +  +  +       ++AITD   ++  ++F + A AAG++P
Sbjct: 2    AFTHLHVHTEYSLLDGSSKIGELAARAKELGMDSMAITDHGVMYGVIDFYRAARAAGVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +          +          +VLL     GYQ L+++VS+ + +D      
Sbjct: 62   IIGCEVYVSPGSRFDR--ETVHGEDRYYHLVLLAENNTGYQNLMKIVSKGF-VDGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            RI    ++E   EG+I L+   +G + R       + A+       ++FG+   ++ LQ 
Sbjct: 119  RIDEEVMREYH-EGIIALSACLAGEVPRYLEKGLYEDAKAAAKRHLEIFGEGNYFLELQD 177

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H     R     +++L+    +PLVATN+  +++ ED+EAHD+L+ +     VS ++R R
Sbjct: 178  HGIPMQRQVNQGIMRLSKELNIPLVATNDCHYINAEDWEAHDILLCIQTGKKVSDENRMR 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  EM  +F   PEA+ENT +IA RC+  ++     LPRF   E  D    
Sbjct: 238  YEGGQYYVKSEEEMRRLFPYAPEAIENTHKIAERCNVEIEFGVTKLPRFDVPEGYD---- 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L +    G  +R               R RLD+EL  I  M +  YFLIV DFI +
Sbjct: 294  SWGYLNHLCDEGFAMRYPNDDGT-------LRARLDYELGTIKSMGYVDYFLIVWDFINF 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + I VGPGRGS AGS+ AY L ITDIDP+R+ LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347  AKSHGIAVGPGRGSAAGSIVAYCLKITDIDPIRYQLLFERFLNPERVSMPDIDVDFCYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG ++VAQI+TFG+L A+  +RDVGR + +PYS  D++ K++P +    
Sbjct: 407  RQEVIDYVVEKYGKDQVAQIVTFGTLAARGVIRDVGRVMDLPYSLCDQVSKMVPAELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A+  +   +    +D  V +L+++S++LEGL RH S HAAG+VI    + + VP+ 
Sbjct: 467  LD-LALRKNPELKALYDSDEQVRKLIDMSKRLEGLPRHTSMHAAGVVISRTSIDEYVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
            R       VTQF M  +E+ GL+K DFLGL+TLT++Q ++  + +  GV +DL  I +DD
Sbjct: 526  RGA-DGTIVTQFTMTTLEELGLLKMDFLGLRTLTVIQDAVKMIKKDHGVDLDLEHIDYDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +    L T    G+FQLES G +  ++ ++P  +EDIIA +SLYRPGP+D I  Y   K
Sbjct: 585  KKVMDSLGTGKNEGVFQLESGGFKTFMKELKPTTLEDIIAGISLYRPGPMDFIPKYLKGK 644

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I    P ++P+LK T G I+YQEQVMQI + L+GY+L  +D++RRAM KK    M
Sbjct: 645  NDPESITYTCPQLEPILKPTYGCIVYQEQVMQIVRDLAGYTLGRSDLVRRAMSKKKAAVM 704

Query: 726  DKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K+++ F+         G   NGI +  A  I++ +  FA Y FNKSHAAAYAV++YQTA
Sbjct: 705  AKERQNFVYGNEEEGVKGCIANGIDEKTANQIYDDMTDFAKYAFNKSHAAAYAVVAYQTA 764

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K +YP EF+AA MT  MDN  K+ ++    R   I I+PP +N     F V  N I Y
Sbjct: 765  FLKYYYPKEFMAALMTSVMDNTTKVSEYILACRNMGIPILPPDINEGYSGFSVSGNGIRY 824

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L+AIK VG      I+        F +L+DF SR+ +K++N+R LES + +GALD    
Sbjct: 825  GLSAIKSVGRAVVDVIIAERESGGLFKNLDDFVSRMSNKEVNKRTLESFIKSGALDTLPG 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFSVENSSVRFEN 954
            +R Q L    ++ +     +K       + F        D   IT       +       
Sbjct: 885  TRKQKLIVSGDLLESKSKEKKTVMEGQMSFFDIAPEEEKDNFHITFPDVGEYDKQTLLAF 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------TIRGNNIRLAAMVVSKQQK 1007
            E+  +G Y SGHP++ Y+ +  K       + V            +N+ +  M+ SK+ K
Sbjct: 945  EKETIGIYVSGHPMEEYRELWEKNVTARTSDFVVDEVGKTIVEDNSNVVIGGMITSKKVK 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T+    + ++T  +     E   FP
Sbjct: 1005 TTKTNQLMAFITVEDLVGTVEVLVFP 1030


>gi|152987648|ref|YP_001346883.1| DNA polymerase III subunit alpha [Pseudomonas aeruginosa PA7]
 gi|150962806|gb|ABR84831.1| DNA polymerase III, alpha chain [Pseudomonas aeruginosa PA7]
          Length = 1185

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1060 (39%), Positives = 610/1060 (57%), Gaps = 55/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ +SL++G + +  +   +A    PA+A+TD +N+ S ++F + A  AGI+P
Sbjct: 16   SFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIKP 75

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  + +            +     +  + LL   A GY+ L EL+SR +   Q    +
Sbjct: 76   ICGADIWLA----------SREEDGPLSRLSLLAMNARGYRNLTELISRGWSEGQRNGEI 125

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   W+ +   EGLI L+    G I  A        AE  L  + ++F +R YV +QR 
Sbjct: 126  IIERDWV-KAAAEGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRT 184

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R  D       V LA     PLVATN+  F+ +ED+EAH+  + +     +    RPR 
Sbjct: 185  SRVNDEEHLHAAVALASRCNAPLVATNDVRFIRQEDFEAHETRVCIGEGRTLDDPRRPRT 244

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+ +EM  +FSDLPEALENTVEIA+RC+  +Q+    LP F       I    
Sbjct: 245  YSDQQYLKSPAEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGI---- 300

Query: 308  ENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++ LR+ +  GLE RL     +         Q Y  RL+FEL++I +M F GYFLIV DF
Sbjct: 301  DDYLRHASFEGLEERLEVLLPKDTPDYEARRQVYVDRLNFELDIIIQMGFPGYFLIVMDF 360

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 361  IKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFC 420

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + RD VI YV + YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP + 
Sbjct: 421  MEGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 480

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +   R+   +D     + E++ KLEG+ R    HA G+VI    L+   
Sbjct: 481  GMTLE-KAYEQEEMLRDFLKSDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFS 539

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ + +         V++
Sbjct: 540  PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVNI 599

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + 
Sbjct: 600  DFIPLDDKPTYALLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 659

Query: 659  V--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +   + NRK+G+ ++   HP      ++P+LK T G+I+YQEQVMQIAQ+++GY+L  AD
Sbjct: 660  MVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGAD 719

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  FI G   NGI   +A NIF+L+ KFA YGFNKSH+AAY +
Sbjct: 720  MLRRAMGKKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 779

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQTAW+KTH+P  F+AA +T +M N +K+    ++ R   ++I+ P VN     F V 
Sbjct: 780  VSYQTAWLKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTVD 839

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D RI Y L AIKGVG      I E  A+  PF++L DFC RVD K++N+R LE+L+ AG
Sbjct: 840  DDGRIVYGLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAG 899

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            ALD  G                +R  LL +++   + A+   ++  + H ++F       
Sbjct: 900  ALDRLGPHYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEP 959

Query: 935  SDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               +     K        R + E+  LG Y +GHP+D Y+  +R+   +   E       
Sbjct: 960  EADVYANHRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARDT 1019

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A ++V+ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1020 Q--TVAGLIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLF 1057


>gi|322831603|ref|YP_004211630.1| DNA polymerase III, subunit alpha [Rahnella sp. Y9602]
 gi|321166804|gb|ADW72503.1| DNA polymerase III, alpha subunit [Rahnella sp. Y9602]
          Length = 1160

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1049 (39%), Positives = 602/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL+VHS YS+++G   +  ++   A+   PA+AITD  NL   ++F   A  
Sbjct: 1    MAE-PRFIHLRVHSDYSMVDGLAKVGPLVKCAASLGMPALAITDFTNLCGLVKFYGAAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG  L++          Q +     +  + +L    +GYQ L  L+SR Y    
Sbjct: 60   AGVKPIIGADLNV----------QSEILGDELAQLTVLAMNNQGYQNLTLLISRAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     + L WL E+  EGLI+L+G   G + +     +     + L  +++ F DR Y+
Sbjct: 110  GAAGPIVDLEWLAEL-NEGLILLSGARMGDVGKFLTRGNDLQVSQCLDFYQQYFPDRYYL 168

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     +       V LA    LP+VATN+  F+   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRAEEENYLHAAVALATERGLPVVATNDVRFMVPTDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  T   Y+++  EM  +F DLPEAL+N+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYTSQQYMRSEDEMCELFEDLPEALQNSVEIAKRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDFLVEKSKIGLEERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNSVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDRVIDHVSEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L++++++LEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFAAEPQLPEIYEADEEVKSLIDMARQLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R       
Sbjct: 523  TDFAPLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKAGEA 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP DD +++ +L    T  +FQLES GM+  ++ ++PD  ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDSFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     I   H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKNPVEMAKQRGGFEEGAKSRGIDGELAIKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I+EA  +   F  L D C+R D KKLN+R+LE L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFKELFDLCARADVKKLNKRILEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMSSLSDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEKSYANVM 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                    + E+  LG Y +GHP+  Y   + +  G +  ++   T RG       +V++
Sbjct: 943  PWPEQTVLDGERETLGLYLTGHPITQYLKEIERYGGGQRLKDMHPTERGKMTVAVGLVLA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|304391642|ref|ZP_07373584.1| DNA polymerase III subunit alpha [Ahrensia sp. R2A130]
 gi|303295871|gb|EFL90229.1| DNA polymerase III subunit alpha [Ahrensia sp. R2A130]
          Length = 1166

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/1028 (53%), Positives = 709/1028 (68%), Gaps = 9/1028 (0%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  HS+YSLLEGA+ L  ++   A D QPA+AITD +NLF ALEFS KA   G+QPI
Sbjct: 23   FVHLHTHSAYSLLEGAVPLAKLMTLAADDDQPALAITDRSNLFGALEFSSKAAKEGLQPI 82

Query: 71   IGC--QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IGC  ++D D +     +   +      P++VLL S   GYQ LI LVS  Y+    +  
Sbjct: 83   IGCTLEVDFDDEGRGSRSGSTQQAMVAFPTLVLLASDERGYQNLIRLVSLAYMEGAVESR 142

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I +  L E   +GLI+LTGG+ GPID     +    A  RL      FGDRLY+ LQR
Sbjct: 143  PHISMGQLVE-HNDGLIILTGGAHGPIDAMIVDDHPTEARARLARLNDAFGDRLYIELQR 201

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              GY   RE +++ +AY   + +VATN   F   EDY AHD L+ +A   +VS+ DR R+
Sbjct: 202  QAGYSPKREGEILAMAYELGIGIVATNEVFFAKREDYSAHDTLICIAEGRMVSEDDRRRL 261

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            TPDHYLK+ +EM  +FSDLPEA++NT  IA+RC+F +Q   PILP F     DD    E 
Sbjct: 262  TPDHYLKSTAEMNVLFSDLPEAIDNTTIIAQRCAFAVQELDPILPFFTGGVGDDPLAAEA 321

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             ELR +AV GL+ RLA   +A GY  + Y +RL+FEL+VI  MKF GYFLIVADFI+WAK
Sbjct: 322  AELRKQAVDGLKDRLAVHPLADGYTREQYNERLEFELSVIENMKFPGYFLIVADFIKWAK 381

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  IPVGPGRGSGAGS+ A++LTITD+DPL+FSLLFERFLNP+R+SMPDFDIDFCQDRRD
Sbjct: 382  EQGIPVGPGRGSGAGSLVAWSLTITDLDPLQFSLLFERFLNPERVSMPDFDIDFCQDRRD 441

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVIRYVQ+KYG ++VAQIITFG+LQA+A LRDVGR LQ+PY QVDRLCK++PN+PA+P  
Sbjct: 442  EVIRYVQDKYGRDQVAQIITFGTLQARAVLRDVGRVLQLPYGQVDRLCKMVPNNPANPTP 501

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            L     +         +  VD L++IS KLEGLYRHASTHAAGIVIGDRPL QLVP+YRD
Sbjct: 502  LYRAVVEEAGLIEARKEEEVDHLIDISLKLEGLYRHASTHAAGIVIGDRPLDQLVPLYRD 561

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
             RSD+PVTQFNMKW+EKAGL+KFDFLGLKTLT+++ + ++L +R V+VD+  +  DD  T
Sbjct: 562  PRSDMPVTQFNMKWVEKAGLVKFDFLGLKTLTVIRTAQNYLKERNVEVDVDKLTLDDEAT 621

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + +L    T+G+FQLES GMR+AL GM+ D  EDIIALV+LYRPGP++NI  YN RK+G+
Sbjct: 622  FKMLQRGETVGVFQLESMGMRKALIGMKADAFEDIIALVALYRPGPMENIPTYNARKHGE 681

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E+    HP I+ +LKETQGVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI  EM+ Q
Sbjct: 682  EEADYYHPKIEHVLKETQGVIIYQEQVMQIAQILSGYSLGEADMLRRAMGKKIASEMEAQ 741

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            + RF+ G  KN I    A  IF++LAKFADYGFNKSHAAAYA++SYQTAW+K ++PVEFL
Sbjct: 742  RARFVDGCEKNDIKAQQANYIFDVLAKFADYGFNKSHAAAYALLSYQTAWLKANHPVEFL 801

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            A+ MTL+M N +K+  F ++A +  I+++ PSVN+  V F V D +I+Y+LAAIKGVG  
Sbjct: 802  ASLMTLDMGNTDKLNDFYREAVRAKIEVVAPSVNSSQVKFSVKDGKIHYALAAIKGVGAQ 861

Query: 849  TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               HI+E    D PF SL  F SRVD K+LNR++LE+L+ AGA D FG +R +L+  LD 
Sbjct: 862  AVAHIVEVRDRDGPFQSLTSFFSRVDPKQLNRKMLENLIHAGAFDGFGPAREELIGGLDR 921

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +  ++  V +N      ++F  + G     + L K +   ++ R + E   +GFYFS HP
Sbjct: 922  LIGHSVRVAENEAIGISDMFGGDTG--ETDVVLPKVAAWAAAERLQREHAAMGFYFSAHP 979

Query: 968  LDVYKPILRKMGIKGYEE--SVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            LD Y+  L K+  + + +        G     L   V S Q +KT++G R+G    S+  
Sbjct: 980  LDEYQTTLEKLRAQSWADFQLAVKASGQAPGILGGTVSSIQYRKTKRGKRMGIGMLSDAT 1039

Query: 1025 KEYEANFF 1032
             ++E   F
Sbjct: 1040 GQFEVVLF 1047


>gi|118590015|ref|ZP_01547419.1| DNA polymerase III subunit alpha [Stappia aggregata IAM 12614]
 gi|118437512|gb|EAV44149.1| DNA polymerase III subunit alpha [Stappia aggregata IAM 12614]
          Length = 1154

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/1028 (53%), Positives = 720/1028 (70%), Gaps = 12/1028 (1%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +VHL+VHS+ SLLEGAL +  +LD   AD QPA+AI DTNNLF A EF+ KA  AGIQPI
Sbjct: 14   YVHLRVHSALSLLEGALPIKKLLDLAKADDQPALAIADTNNLFGAQEFATKAWGAGIQPI 73

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
              CQL +   D L+    G+   P +  +VLL  T  GY  L+EL SR +L  +      
Sbjct: 74   AACQLSVFFDDGLE---SGRRGEPALSDVVLLAMTEAGYGNLMELSSRAFLDTETGLRPH 130

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   +L    +EG+I+LTGG  GPI  A       +A+ RL T    F  R YV +QRH 
Sbjct: 131  VSSGYLLSK-SEGVIVLTGGVGGPIGAALLAGRKDLAKSRLQTLADRFQGRCYVEIQRHG 189

Query: 191  GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +R  E   + LAY H LPLVATN + F   EDYEAHD L+ ++   V+ + DR R+T
Sbjct: 190  MEAERKTEDAFLDLAYEHGLPLVATNEAFFPRREDYEAHDALICISEGRVLIEDDRRRLT 249

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P+HY K+R+EM ++F+DLPEALE+TVEIARRCSF     APILPRF   + D  + E+  
Sbjct: 250  PEHYFKSRAEMCALFADLPEALESTVEIARRCSFRPLKRAPILPRFAGADADPEEAEKAE 309

Query: 310  E--LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L  +A  GL  RL    +A G   +DY  RLD+E  +I RMKF GYFLIVADFI+WA
Sbjct: 310  AEELIRQAREGLRARLDVHGLAPGLEEKDYWDRLDYETGIIERMKFPGYFLIVADFIKWA 369

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K  +IPVGPGRGSGAGS+ A++LTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQ RR
Sbjct: 370  KAQDIPVGPGRGSGAGSLVAWSLTITDLDPMRFSLLFERFLNPERVSMPDFDIDFCQTRR 429

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVIRYVQ KYG ++VAQIITFGSLQA+A LRDVGR LQMPY QVDRLCKL+P +PA+PV
Sbjct: 430  EEVIRYVQEKYGRQQVAQIITFGSLQARAVLRDVGRVLQMPYGQVDRLCKLVPANPANPV 489

Query: 488  S-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  QAI ++ R REA   +  V+RLL ++QKLEGLYRHASTHAAG+VIGDRPL QLVP+Y
Sbjct: 490  TLGQAIEEEPRLREAAKEEEIVERLLGMAQKLEGLYRHASTHAAGVVIGDRPLEQLVPLY 549

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            RD RSD+PV QFNMK +E+AGL+KFDFLGLKTLT++  ++  + +RG+ VD++ +P DD 
Sbjct: 550  RDPRSDMPVAQFNMKMVEEAGLVKFDFLGLKTLTVIDTAVKLIERRGIDVDVAALPIDDE 609

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY LL    T G+FQLES GMR+A+ GM+PD  EDIIALV+LYRPGP++NI VYN  K+
Sbjct: 610  KTYQLLARGETFGVFQLESQGMRRAIAGMKPDRFEDIIALVALYRPGPMENIPVYNAVKH 669

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G++    +HPL++P+L ET G+I+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI  EM+
Sbjct: 670  GEQDPDCLHPLLEPILMETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIAAEME 729

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             Q+ RF+ GA + GI+K+ A  IF+L+AKFA+YGFNKSHAAAYA++SY TAW+K ++PVE
Sbjct: 730  VQRARFVDGAVERGINKSHAGTIFDLVAKFANYGFNKSHAAAYALVSYHTAWLKANHPVE 789

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+AASMTL++ N EK+  + Q+AR+  I+I PPS+N   V F V D +I Y++ AIKGVG
Sbjct: 790  FMAASMTLDLGNTEKLGDYRQEARRMKIEIEPPSINRGQVYFDVADGKILYAMGAIKGVG 849

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 HI+E   DKPF SL DF  R+  K LN+R LE+LV AGA D    +R ++ + LD
Sbjct: 850  EQAVEHIVEVRGDKPFKSLGDFARRISPKALNKRTLENLVAAGAFDELEPNRARVFEGLD 909

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             I   AQ  E+N+T   + +F        + + L++     +  + + E   +GFY S H
Sbjct: 910  RIMGLAQRTEENKTLGQDELFGGCDS--EEPLQLDEVHGWTNEEKLQREHSAIGFYLSAH 967

Query: 967  PLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            P+D Y  +L KM ++ + +    ++   ++ RLA  VVS Q++KT+ G+R+G V  S+  
Sbjct: 968  PIDEYAAVLEKMRVQPWSQFSEAVKKGASHGRLAGTVVSMQERKTKTGNRMGIVRLSDAT 1027

Query: 1025 KEYEANFF 1032
             +YEA  F
Sbjct: 1028 GQYEALLF 1035


>gi|45656127|ref|YP_000213.1| DNA polymerase III subunit alpha [Leptospira interrogans serovar
            Copenhageni str. Fiocruz L1-130]
 gi|45599360|gb|AAS68850.1| DNA polymerase III alpha subunit [Leptospira interrogans serovar
            Copenhageni str. Fiocruz L1-130]
          Length = 1173

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1044 (36%), Positives = 597/1044 (57%), Gaps = 31/1044 (2%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            ++  ++    F HL +H++YS+L+GA+ +  ++  +      ++A+TD  N+F A+EF  
Sbjct: 1    MSLTMQ---DFAHLHLHTNYSMLDGAIRIKELMQHVKECGMSSVAMTDHGNMFGAVEFYN 57

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            +A   GI+PIIG +  +   +  + T   K        ++LL    EGY+ LI L S+ Y
Sbjct: 58   EAIKQGIKPIIGSEFYVSP-NRKQETEMVKIADGNAYHLILLAKNEEGYKNLIRLSSKSY 116

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-G 179
              +   +  RI    L    +EGL+ LT   +G ++R         + +      ++F  
Sbjct: 117  T-EGFYKKARIDYDLLDR-HSEGLVCLTACLAGEVNRKILEGKIDESFQLAGKLNEIFRK 174

Query: 180  DRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +  Y+ +Q H   ++     QV +      +PLV TN+S FL + D EA D+L+ +    
Sbjct: 175  EDFYMEIQNHGIPEQMTVAKQVYEFGKKTGIPLVVTNDSHFLKKNDQEAQDILLRIGMQK 234

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
             ++         + Y+KN  EM  IF ++PEA  NT+EI+ + +  LQ    +LP F   
Sbjct: 235  RITDPMEFGFNGEFYVKNGDEMAKIFPEIPEAFYNTLEISNKVNLKLQFGNYLLPEFEVP 294

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E  D     ++ L      G+E +           + + ++R+ FELN I  MKF+GYFL
Sbjct: 295  EGYD----ADSYLEKLIWEGIERKYLN-------LSPEIKERVIFELNTIKNMKFAGYFL 343

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV D+I +AK+N IPVGPGRGS AGS+ AYAL IT+++PL+ +LLFERFLNPDR  MPD 
Sbjct: 344  IVQDYINYAKRNGIPVGPGRGSAAGSIVAYALGITNVEPLQHNLLFERFLNPDRKDMPDI 403

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC +RR+EVI Y++ +YG E+V QIITF SL AKAAL+DV R L +P+ + + + K 
Sbjct: 404  DTDFCVERREEVINYIRRRYGEEKVGQIITFNSLAAKAALKDVARVLNLPFGEANEMTKA 463

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
             PN     +S +A++  S  +     D    ++  I+Q+LEG YR    HAAG+VI   P
Sbjct: 464  FPNKLGMSIS-EALSTSSELKNFSEKDDINHKIFAIAQRLEGNYRQPGRHAAGVVISPYP 522

Query: 539  LSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            L ++VP+      + P     VTQ++   +E  GLIK D LGLK LT L  ++  + QR 
Sbjct: 523  LEEVVPLSTVAEKEKPGVRAIVTQYDKNNLESIGLIKMDILGLKNLTTLDYAIKLIEQRR 582

Query: 594  -VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             ++++L  I +DD  TY LL    TLGIFQLES+G+   +   Q    ++I+AL++LYRP
Sbjct: 583  GIRINLDEISYDDANTYSLLRKANTLGIFQLESTGITDLVAKSQVSNFDEIVALIALYRP 642

Query: 653  GPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GP+   +   Y +RK+GK+++   HP  +P+LKET GV +YQEQVM I++++ G+S+ ++
Sbjct: 643  GPMGEGMLDEYLDRKSGKKQVTYPHPSCEPILKETFGVPVYQEQVMSISRVVGGFSVGDS 702

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            DVLR+AM KK  + MDK K +F+ GA K GI + +A ++FE L +F  YGFNKSH+ AYA
Sbjct: 703  DVLRKAMAKKKADLMDKLKVQFVEGAVKQGIQEKVAKDLFEQLERFGGYGFNKSHSVAYA 762

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +I+YQTA++K +Y +E+L A +  +      I K+  +AR+  IQI+ P V+     F V
Sbjct: 763  IITYQTAYLKANYTIEYLTALLASDHGKTTDIVKYINNAREMGIQILNPDVSESQASFSV 822

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             DN  I + L+A+KGVG T A  I++A      F +L+DF   +D++ +N++V E+L+ A
Sbjct: 823  IDNTTIRFGLSAMKGVGETAANSIIQARTKVGSFRTLQDFALNIDTRLINKKVFEALIQA 882

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GALD FGY+R  L +S+D+I  +AQ  ++       ++F +E+ +FS  +  +       
Sbjct: 883  GALDSFGYTRKCLFESVDSILTFAQKEQERANEGQFSLFGNEESSFSLNLPKDAL-EWEI 941

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              + + E+ + G Y SGHPLD Y+  L+ +     E+      G  + +A ++ SK  K 
Sbjct: 942  DEKLKREKAIAGLYLSGHPLDKYEKQLKSLKTIPIEKFDDLKSGTKVEVAGVISSKNIKL 1001

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            +++          +   E E   F
Sbjct: 1002 SKRNEEFANFKLEDRTGEIECVAF 1025


>gi|330807796|ref|YP_004352258.1| DNA polymerase III alpha subunit [Pseudomonas brassicacearum subsp.
            brassicacearum NFM421]
 gi|327375904|gb|AEA67254.1| DNA polymerase III alpha subunit [Pseudomonas brassicacearum subsp.
            brassicacearum NFM421]
          Length = 1173

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1065 (39%), Positives = 600/1065 (56%), Gaps = 57/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  
Sbjct: 1    MP--ASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKAAMG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI G  L +  +D          P   +  I LLV  A GY+ L EL+SR ++  Q
Sbjct: 59   AGIKPICGADLWLSNKD----------PDAPLSRISLLVMNALGYRNLTELISRGFIDGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
               S+ I   W+ E  +EGLIML+    G I  A    + + AE     +  +F DR Y+
Sbjct: 109  RNGSIIIEREWVAE-ASEGLIMLSAAKEGEIGLALLSGNPEEAETLARDWMSVFPDRFYI 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR +R  D       V LA     PLVATN+  F+ ++D+EAH+  + +     +   
Sbjct: 168  EVQRTNRPNDEEHLHAAVALADKIGAPLVATNDVRFIKQDDFEAHETRVCIGEGRALDDP 227

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R +  +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   
Sbjct: 228  RRSKNYSNQQYLKSAEEMAELFSDLPEALENTVEIAKRCNIDVKLGKHFLPNFPIPDGMT 287

Query: 303  IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            I    +   R  +  GLE R                 Q Y  RL+FEL++I +M F GYF
Sbjct: 288  I----DEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 344  LIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K
Sbjct: 404  FDVDFCMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP +    +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI   
Sbjct: 464  MIPFEVGMTLE-KAYEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPT 522

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG---- 593
             L+   P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +      
Sbjct: 523  KLTDFSPIYCDEEGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVG 582

Query: 594  -VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +D++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RP
Sbjct: 583  EEPLDIAFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642

Query: 653  GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V +                   +  + P+L  T G+I+YQEQVMQIAQ+++GY
Sbjct: 643  GPLQSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  FI G + NGI   +A NIF+L+ KFA YGFNKSH
Sbjct: 703  TLGGADMLRRAMGKKKPEEMAKQRGGFIEGCATNGIDPDLAGNIFDLVEKFAGYGFNKSH 762

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAY ++SYQTAW+K HYP  F+AA ++ +M N +K+    ++ R   +++  P VN   
Sbjct: 763  SAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASE 822

Query: 826  VDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F V D  RI Y L AIKGVG      I EA  D PF  L DFC+RVD K++N+R L+ 
Sbjct: 823  FKFTVNDEGRIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDG 882

Query: 885  LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+ +GALD  G                +R  LL +++   K A+   +   + H ++F  
Sbjct: 883  LIRSGALDRLGPYFQDEPKAYQANIDRNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGG 942

Query: 930  EKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                    +     K        R + E+  LG Y +GHP+D Y+  +R+   +   +  
Sbjct: 943  LFVEEDADVYGNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +A M+++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1003 PARDTQ--TVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045


>gi|144899840|emb|CAM76704.1| DNA polymerase III alpha subunit [Magnetospirillum gryphiswaldense
            MSR-1]
          Length = 1159

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 494/1048 (47%), Positives = 677/1048 (64%), Gaps = 31/1048 (2%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +     FVHL+ H++YSL EGA+ L  ++        PAI I DT NLF ALEFS    
Sbjct: 5    AMPIHADFVHLRTHTAYSLSEGAIKLKQLIKLCEKQMMPAIGIADTGNLFGALEFSTSCA 64

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AGIQPIIGCQ+ +  ++       G+ P P    +VLL  +  GY  L++LVS+ YL  
Sbjct: 65   DAGIQPIIGCQVAV-RREGEAPARDGRKPDPDW--LVLLCQSETGYANLLKLVSKAYLET 121

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
               ++ ++ L  L E  + GLI+LTGG  GP++R      +  AE  L+   + F  R Y
Sbjct: 122  DAGETPQVTLHDL-ETRSAGLILLTGGPKGPVNRLLADGQNDKAEILLVRLAQGFPGRAY 180

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            V LQRH   +  R E  +V LAY H+LPLVATN   F     YEAHD L+ +A    V+Q
Sbjct: 181  VELQRHGEENENRAEPGLVNLAYKHDLPLVATNEPFFADRGMYEAHDALICIAEGAYVAQ 240

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             +R R+TP+HY K+ +EM  +F+DLPEA +NT+ +A+RC+F++        + I      
Sbjct: 241  DERRRLTPEHYFKSPAEMRELFADLPEACDNTLVVAQRCAFMV-----AKRKPILPPFRM 295

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-------YRQRLDFELNVIARMKFSG 355
                E   LR     GL  RL +     G   ++       YR+R+++E+ VI +M F G
Sbjct: 296  DGLTEAEVLRKMCWDGLAQRLEKHVFQPGMTEEEREHVARPYRERIEYEIGVIEQMGFPG 355

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV+DFIQW+K ++IPVGPGRGSGAGS  A+ALTITD+DPLR+ LLFERFLNP+R+SM
Sbjct: 356  YFLIVSDFIQWSKAHDIPVGPGRGSGAGSAVAWALTITDLDPLRWGLLFERFLNPERVSM 415

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQDRR+E IRYVQ+KYG+ +VAQIITFG LQA+A LRDVGR LQMPY QVDR+
Sbjct: 416  PDFDIDFCQDRREETIRYVQDKYGYHQVAQIITFGKLQARAVLRDVGRVLQMPYGQVDRI 475

Query: 476  CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            CK++PN+PA PV+  QA+  +   +EAR  D +V  LL++  KLEGLYRHASTHAAG+VI
Sbjct: 476  CKMVPNNPASPVTLEQALEIEPLLKEARERDEAVAHLLDMGMKLEGLYRHASTHAAGVVI 535

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
            GDR L +LVP+YRD RSD+PVTQFNMKW+E AGL+KFDFLGLKTLT++  ++  + +   
Sbjct: 536  GDRSLDELVPLYRDPRSDMPVTQFNMKWVEAAGLVKFDFLGLKTLTVMITAIKHIKKTKG 595

Query: 595  -KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              VDLS +P DD  TY LLT     G+FQLESSGMR  L  M+P+ +ED+IA+V+LYRPG
Sbjct: 596  LDVDLSALPLDDQATYELLTRGDAAGVFQLESSGMRDVLRKMRPNQLEDLIAVVALYRPG 655

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  Y   K+G E+   +HPL++P+LKET G+++YQEQVMQIAQ+LSGYSL  AD+L
Sbjct: 656  PMDQIPRYIACKHGLEQPDYMHPLLEPILKETFGIMVYQEQVMQIAQVLSGYSLGGADLL 715

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKKIKEEM+ Q++ F+ GA    +    A  IF+ +AKFA+YGFNKSHAAAYA+I+
Sbjct: 716  RRAMGKKIKEEMEAQRKTFVDGAVARAVDGDQASMIFDKVAKFAEYGFNKSHAAAYALIA 775

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD- 832
            YQTAW+K ++P EF+AA+MT EM N +K+  F Q+  +  I+++PP +N     F V   
Sbjct: 776  YQTAWLKANHPAEFMAATMTYEMANTDKLNSFRQELDRLKIKLLPPDINKSQATFSVEKL 835

Query: 833  ----NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                + + Y+LAA+K VG    R I E      P+  L DF  R+D+K+LNRR +E++V 
Sbjct: 836  ADGSHAVRYALAALKNVGEGACRSIAEERERSGPYKDLFDFARRLDTKQLNRRQMENMVR 895

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AG  D    +R ++ ++ + + +Y     + R +   ++     G  +    LE  S  +
Sbjct: 896  AGVFDSLEKNRGKVFKNCEGLLRYGAGEAEQRQSSQMSLLG---GNVAPPPKLENASDWS 952

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR---GNNIRLAAMVVSK 1004
               +   E   +GFY S HPLD +   L+++G+    E    ++    + ++LA  ++SK
Sbjct: 953  PHEKLTQEFDAIGFYLSAHPLDAFSKSLKRLGVLKISELPKHLQAGGKSRVKLAGSMLSK 1012

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            Q++ + KGSR  +VT S+ +  YE   F
Sbjct: 1013 QERTSAKGSRYAFVTASDSSGMYEVTCF 1040


>gi|206890698|ref|YP_002248167.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii
            DSM 11347]
 gi|206742636|gb|ACI21693.1| DNA polymerase III alpha subunit [Thermodesulfovibrio yellowstonii
            DSM 11347]
          Length = 1135

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1045 (39%), Positives = 622/1045 (59%), Gaps = 45/1045 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S  FVHL +H+ YSLL+GA+ +N ++++      PA+AITD  NLF  +EF +KA  
Sbjct: 1    MSMS-EFVHLHIHTEYSLLDGAIKINELIEQAKKYNMPAVAITDHGNLFGVVEFFKKANK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPF---PTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            AG++PIIGC++ +  Q     T   K P         + LLV   EGY+ L  LV+R YL
Sbjct: 60   AGVKPIIGCEVYVAPQSRFDKTKINKDPGMPEEASFHLTLLVENEEGYKNLTRLVTRSYL 119

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             +      RI +  L     +GL+ L+G   G I     + + + AE    T K +FG+ 
Sbjct: 120  -EGFYYKPRIDMELLSMY-NKGLLALSGCLKGEIPYNIVYENIERAENTAKTLKDIFGNN 177

Query: 182  LYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             ++ +Q +   ++      +++L+   ++P+VATN+  +L + D  AH++L+ +     +
Sbjct: 178  FFLEIQSNSLPEQTIANRGLIELSKKFDIPVVATNDCHYLHKSDARAHEILLCIQTGKTI 237

Query: 241  SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
              + R +  + + Y K+  EM S F ++PEAL+NT++IA RC+F L++    LP++   +
Sbjct: 238  KDEKRLKFQSDEFYFKSPEEMYSAFVEIPEALKNTLQIAERCNFKLRLGEHKLPKYNVPQ 297

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                    E  L+  A  GL+ R        G  A+DY +RL+ EL VI  M F+ YFLI
Sbjct: 298  G----YTAEEYLKKLAQEGLKERFK------GNVAEDYIKRLEEELKVITEMGFASYFLI 347

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI +A++ +IPVGPGRGS AGS+ AYAL ITDIDP+++ LLFERFLNP+R+S+PD D
Sbjct: 348  VWDFINYARRKSIPVGPGRGSAAGSLVAYALKITDIDPIKYGLLFERFLNPERISLPDID 407

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC+DRR+EVI+YV   YG +RVA IITFG++ A+A +RDVGRAL +PY+ VD++ K+I
Sbjct: 408  VDFCKDRREEVIQYVAENYGKDRVAHIITFGTMAARAVVRDVGRALNIPYADVDKIAKMI 467

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P   A P   +A+  + R +E    + +V  L++I+ +LEGL RHAS HAAG+VI   PL
Sbjct: 468  PF--ACPSLEEALNLEPRLKELYNKNETVKELIDIALRLEGLARHASQHAAGVVISPEPL 525

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
              L+P+Y++   +  ++QF+MK +E  GL+KFDFLGLKTLT++  ++ ++  +G  +DL+
Sbjct: 526  EDLMPLYKNSGEETVISQFDMKALEDVGLLKFDFLGLKTLTVIDDTIKYVKAQGKDIDLN 585

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD ETY LL++  T G+FQLES GM++ L+ M+P   ED+IALV+LYRPGP+ + +
Sbjct: 586  NIPLDDSETYRLLSSGQTTGVFQLESRGMKELLKRMEPQRFEDLIALVALYRPGPLGSGM 645

Query: 660  VYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            V +  K  K    +    P +  +L ET GVI+YQEQVM+IA  ++G+++ +ADVLR+AM
Sbjct: 646  VDDFIKRKKGLVPVEYELPELKDILDETYGVILYQEQVMKIANKIAGFTMGQADVLRKAM 705

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKKI E M   KE FI GA KNGI    A ++F ++A F +YGFNKSH+AAYA ++Y TA
Sbjct: 706  GKKIPELMASLKEEFIQGAQKNGIPYEKAESLFNIMAAFGEYGFNKSHSAAYAYLAYITA 765

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HYP EF AA+++ EM +  KI KF  + + + I+I  P +N     F V +  I +
Sbjct: 766  YLKAHYPQEFFAANLSNEMGDTNKIVKFINECKAWGIEIKGPDINESDRAFTVKEKFIRF 825

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L A+KGVG +  + I+     K F S++DF +R+D++K+N++V+ESL+ AGA D     
Sbjct: 826  GLEAVKGVGGSALQCILNEREKKKFTSIDDFLTRLDTRKVNKKVIESLIKAGAFDSLYP- 884

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
                        +Y     +         F   K +     T E     +++     E+ 
Sbjct: 885  ------------QYTPNQARAIAMHELLSFKGVKSSRGLFFTHENIEAWDNNTVLSEEKS 932

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI---------RLAAMVVSKQQKK 1008
             LGFY +GHP+   +P+L K+ +    +   T   + +         ++A +V   + K 
Sbjct: 933  SLGFYLTGHPMKPLRPVLNKINVSTIADIFDTDEDDFVNNNEETHEIKIAGIVEEIKSKA 992

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
              KG    ++T  +     E   +P
Sbjct: 993  KEKGVT-AYITIEDETGRVEVVIYP 1016


>gi|302873297|ref|YP_003841930.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B]
 gi|307688537|ref|ZP_07630983.1| DNA polymerase III DnaE [Clostridium cellulovorans 743B]
 gi|302576154|gb|ADL50166.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B]
          Length = 1204

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1062 (35%), Positives = 593/1062 (55%), Gaps = 54/1062 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   FVHL VH+ YSLL+G+  ++ ++ +       A+AITD   ++  +EF + A  
Sbjct: 1    MSR--DFVHLHVHTGYSLLDGSGKISLMVKRAKELGMNAMAITDHGVMYGCVEFYKAAKE 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI+G ++ +  +         K        +VLLV  + GY  L+++VS   + D 
Sbjct: 59   VGIKPILGSEIYVASKSMHIKEQGRKN---DTHHLVLLVKNSTGYDNLMKIVSAASI-DG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 R+   +L++  +EGLI L+    G +      ++  +A++  L +K+ F D  Y+
Sbjct: 115  FYYKPRVDHDFLKK-HSEGLIALSACLGGEVQGHILKSNLDIAKETALFYKETFKDGFYL 173

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQ H   ++      ++ ++   ++PLVATN+  ++++ED  AHD+L+ +     + +K
Sbjct: 174  ELQNHGMREQIMVNEHLIAMSKELDIPLVATNDIHYINKEDSRAHDILLCIQTGKTIDEK 233

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R        Y++++ EM  +F  + EAL+NTV+IA +C+F  + H   LP F       
Sbjct: 234  GRMSYQPEQFYIRSQEEMEELFGYVEEALDNTVKIAEQCNFDYEFHVSKLPNFPLP---- 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             +++    LR+    GL     +         ++ + RLD+EL++I  M +  YFLIV D
Sbjct: 290  SEQDHFQYLRDTCYKGLAELYEE-------ITEEIKVRLDYELDIIKTMGYVDYFLIVWD 342

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI++A +N IP GPGRGS AGS+ A+ L IT IDP+++SLLFERFLNP+R+SMPD D DF
Sbjct: 343  FIRFANENGIPTGPGRGSAAGSIVAFTLGITKIDPIKYSLLFERFLNPERVSMPDIDSDF 402

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV +KYG+E V+QIITFG++ A+  +RDVGRA+   YS+VD + K+IPN 
Sbjct: 403  CYERRQEVIDYVVDKYGYESVSQIITFGTMAARMCIRDVGRAMNYSYSEVDAIAKMIPNM 462

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A+  +S  + A   +  V  L+++S+ LEGL RH STHAAG+VI  +PL   
Sbjct: 463  LGINIE-RALEVNSELKAAYEENERVRDLIDVSKTLEGLPRHTSTHAAGVVIASQPLVSY 521

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            VP+ ++   +  VTQ+ M  +E+ GL+K DFLGL+TLT+L+ ++D + Q + +++DL  I
Sbjct: 522  VPLQKN--DEAIVTQYTMGTLEELGLLKMDFLGLRTLTVLKDAVDMVKQNKRIEIDLDKI 579

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
               D + Y ++    T+G+FQLES+GM   ++ ++PD +EDIIA +SLYRPGP+  I  Y
Sbjct: 580  DDADPKVYTMVGEGKTVGVFQLESAGMTSFMKDLKPDSLEDIIAGISLYRPGPMAEIPRY 639

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K    KI    P ++P+L  T GV++YQEQVM+I + L+GYS+  +D++RRAM KK 
Sbjct: 640  IEGKRNPAKIRYETPELEPILGVTYGVMVYQEQVMEIVRKLAGYSMGRSDLVRRAMSKKK 699

Query: 722  KEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
             + M+++++ FI             G  +NGIS   A  IF+ +  FA Y FNKSHAAAY
Sbjct: 700  HKVMEEERQNFIYGIVDKDGNIEVPGCLRNGISVEAANKIFDQMMDFASYAFNKSHAAAY 759

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            AV++YQTA+M  +YP EF+AA +   M N EK+  + + A++ +I+++PP +N     F 
Sbjct: 760  AVVAYQTAYMMCYYPTEFIAAMLNSVMGNNEKVAYYIRFAKEKDIEVLPPHINESYSKFT 819

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V   +I + +A+IK VG      I++   +   F    DF  ++D   +N+R  ESL+ +
Sbjct: 820  VNKEKIRFGMASIKNVGGNVTDSIVKVREEKGKFKDFMDFAEKIDVSTVNKRAAESLIKS 879

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI---FAHEKGTFSDKITLEKFSV 945
            GA D FG  R QLL  ++ +       +K       N+   F ++  T   KI   K   
Sbjct: 880  GAFDEFGVYRSQLLAIMEKVLDGVSSQKKRNIQGQLNLFQDFENDDSTMDIKIEYPKIKE 939

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT--------------IR 991
                     E+ + G Y SGHPLD Y   L  +      E V+                 
Sbjct: 940  FEKKYILAMEKEMTGLYLSGHPLDEYVQTLNYVTNTNSSEIVSNQLLEGEEQLDNTKIRD 999

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            G+ + +   +    +K TR  + + ++   +     E   FP
Sbjct: 1000 GDKVIIGGTIAEISKKITRNNAMMAFLRLEDLYGSVEVIIFP 1041


>gi|216263511|ref|ZP_03435506.1| DNA polymerase III subunit alpha [Borrelia afzelii ACA-1]
 gi|215980355|gb|EEC21176.1| DNA polymerase III subunit alpha [Borrelia afzelii ACA-1]
          Length = 1161

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1036 (37%), Positives = 604/1036 (58%), Gaps = 23/1036 (2%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A 
Sbjct: 14   GMSFRAKFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AGI+PIIG +  +         +           ++LL     GY+ L++L S  YL +
Sbjct: 74   KAGIKPIIGIEAYMAKTSKFLKKHDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y
Sbjct: 131  GFYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQRH   D+     ++V+ +    +PL   N+S +++ ED  A D+++ +      S 
Sbjct: 190  LELQRHGIKDQDIVNERLVEYSKELGVPLTVANDSHYVNREDASAQDIIVCIGTGAKKSD 249

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300
            ++R ++ T + Y+K++ EM  +F+DLPEALENTV I  +   F +    PILP +     
Sbjct: 250  ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPIE 309

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             +        L    + GL+                 + R  +EL+VI RM F GYFLIV
Sbjct: 310  FN---TLGEYLEYLTLEGLK-------FRYKTLTSKIKDRAFYELSVIIRMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  ++IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDHDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+AKA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKAKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGP--KVSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSISTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+ +L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFKMLGEGRSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHA AY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAVAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAMGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I++    +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLNQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F     + +       +     + S     E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKRLGQNSLFDVLESQESIQQSFNYQVLKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +         + +A  + + ++ + ++ S +  +T++ + R+ 
Sbjct: 958  LLGFYVSGHPLDPYKKAINNFSSLNVLKDLAAKKDSIVQFSGILNSVKIIQTKRNNSRMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|225847875|ref|YP_002728038.1| DNA polymerase III subunit alpha [Sulfurihydrogenibium azorense
            Az-Fu1]
 gi|225643592|gb|ACN98642.1| DNA polymerase III subunit alpha [Sulfurihydrogenibium azorense
            Az-Fu1]
          Length = 1172

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1051 (34%), Positives = 566/1051 (53%), Gaps = 32/1051 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +H+ YSLL+GA+ + ++  K       A+ +TD  N+F A+EF Q+  + G++P
Sbjct: 4    DFVHLHLHTHYSLLDGAIKIKDLAKKAVEYGYKAVGLTDHGNIFGAVEFYQEMKSVGVKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPF-PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIG +         K               ++L      G++ L++L S  Y  +     
Sbjct: 64   IIGMESYFTNNRFEKKGEGSDDILTDKNYHLILFAKDKTGFKNLMKLSSLSYT-EGFYYK 122

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L++   EGLI  T    G I         + A+K     K +FG+ LY  +Q 
Sbjct: 123  PRIDWELLEKYH-EGLICQTACLKGFIPNLLSKGQYEEAKKYAKRLKDIFGEDLYFEIQV 181

Query: 189  HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV----VSQK 243
            +   +       +++LA    + +V TN+S +L+ ED  AHDV+ A+           + 
Sbjct: 182  NGLEEQEEANKGIIKLAKELGIKVVGTNDSHYLNPEDQPAHDVIKALQMKETLQSLQEKG 241

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAPILPRFIEKECD 301
               +V   H+                        E         +    + P++     +
Sbjct: 242  KAFKVKGLHFTSPEEMYEKFKGYEEYLKNTMEIAEKCNVEIDTAETRGYLFPKYQIPGIE 301

Query: 302  DIQKEE-ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +  +E+ +      +  GLE RL +         Q+YR+RL +E++VI  M F+ YFLIV
Sbjct: 302  NPTQEDIKAYFEKLSKEGLEKRLEKEKNLSKEKLQEYRERLQYEIDVINNMGFAEYFLIV 361

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI +AK N IPVGPGRGS  GS+ AY L IT+IDPL+  L+FERFLNP+R+SMPD D+
Sbjct: 362  QDFINYAKNNGIPVGPGRGSAGGSLVAYCLGITEIDPLKHGLIFERFLNPERISMPDIDV 421

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + R++VIRYV++KYG + VAQIITF  +++K  +RDV R L  PY + D++ K+I 
Sbjct: 422  DFCMENREKVIRYVKDKYGEDSVAQIITFNFMKSKMVIRDVARVLGFPYQEADKIAKMIL 481

Query: 481  NDP--AHPVSLQ-AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
              P     +++   +  +  FR+    DP V +LL++++KLEG  RH   HAAGIVI   
Sbjct: 482  PGPIQGSTLTIDENLEANPDFRKLYETDPKVKQLLDLARKLEGSARHTGIHAAGIVIAPG 541

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKV 596
            PL + VP+YRD +     TQF MK +E+ GL+K DFLGLKTLT L      + +R  +++
Sbjct: 542  PLDEYVPVYRD-KDGNKATQFEMKTLEQLGLVKMDFLGLKTLTELDLMKKLIKERHGIEI 600

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            +   +P DD   Y LL +  T G+FQLES GM+  L  ++P   ++IIA+++L+RPGP+ 
Sbjct: 601  NYQDLPLDDENVYKLLQSGKTTGVFQLESKGMQDLLVRLKPTVFDEIIAILALFRPGPLM 660

Query: 657  NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +V  Y  RK+G++ I      +  +LKET G+I+YQEQ+M ++ +LSG+S++EAD LR
Sbjct: 661  SGMVDEYIERKHGRKPIEYPFEEVKEVLKETYGLIVYQEQIMFMSNILSGFSMAEADTLR 720

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +A+GKK  E M K K RF+ GA + G  +     +++ + KFA Y FNKSH+ AYA ++Y
Sbjct: 721  KAIGKKNPETMAKMKGRFVEGAVERGFDREKVEKLWDDIEKFASYSFNKSHSTAYAYLTY 780

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833
             TAW+KT+Y  EF A  ++ E+++ + +     D   F I+++PP VN    +F +    
Sbjct: 781  WTAWVKTYYTDEFFAVKLSTEVNDSKFLNLLI-DMENFGIKLLPPDVNKSMAEFYIESPK 839

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I + LA IK VG ++A+ I++    +  F  + DFC R+D+K  N+RVLESL+ AGA D
Sbjct: 840  NIRFGLARIKNVGESSAKEIVKEREKNGEFVDIFDFCERLDTKTANKRVLESLIKAGAFD 899

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEK--FSVENSS 949
                 R  LL ++D      Q   +++     ++FA       + K T E          
Sbjct: 900  FEKVDRAILLNNVDKAISSGQKARESKMAGQNSLFALTTTPVVNVKHTYEDTGIKKLTER 959

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNN------IRLAAMVV 1002
             + + E+ VLGFY SGHP++ YK  L+   +    E    +  G        ++ A +V 
Sbjct: 960  EKLKYEKEVLGFYLSGHPINAYKKELKGK-VAKIGEIYDLVFSGKRPEGDLKVKFAGVVD 1018

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + KKT+ G+ +   +FS+   + +   FP
Sbjct: 1019 EIKLKKTKSGNTMMMFSFSDETGQIDCRAFP 1049


>gi|89070902|ref|ZP_01158137.1| DNA polymerase III subunit alpha [Oceanicola granulosus HTCC2516]
 gi|89043541|gb|EAR49752.1| DNA polymerase III subunit alpha [Oceanicola granulosus HTCC2516]
          Length = 1166

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 491/1057 (46%), Positives = 679/1057 (64%), Gaps = 47/1057 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  F+HL+VH+ YSLLEGA+ + ++    A  + PA+A+TDTNN+F ALEFS+ A  
Sbjct: 1    MTSASRFIHLRVHTEYSLLEGAVPVKSLPGLAAGAEMPAVAVTDTNNMFCALEFSEYAAK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQLD+       +T +          +VLL  +  GY  L++L S  YL + 
Sbjct: 61   AGVQPILGCQLDVTY-----VTPEPGAKPEAPAPVVLLAQSEAGYMNLMKLNSCAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              +  ++ L  L     EGLI LTGG  GP+ R         A+  +   K ++GDRLY+
Sbjct: 115  RAEWPQVTLQELAA-HGEGLICLTGGPDGPVGRLLRAGQRARAQALVERLKAIYGDRLYM 173

Query: 185  NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       +R  E   V++AY  ++PLVATN+  F   + YEAHD L+ +A   
Sbjct: 174  ELQRHPGEAGAPEAERLSERGHVEMAYALDIPLVATNDVYFPKTDLYEAHDALICIAEGA 233

Query: 239  V-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                Q  R R+TP +Y K++ EM ++F+DLPEALENTVEIARRC++  +  A        
Sbjct: 234  YVDQQAPRRRLTPQNYFKSQQEMATLFADLPEALENTVEIARRCAYKAEKRA-------- 285

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    +E  ELR +A  GL  RLA   I      ++Y++RLDFEL++I  M F GYF
Sbjct: 286  PILPRFADDEVEELRRQANEGLAARLA--VIPHAAPVEEYQKRLDFELDIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR++LLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYALLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQ+PY QVD+L K
Sbjct: 404  FDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQLPYMQVDKLSK 463

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS++  +AD+ R REA   +  V RLL   Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALADEPRLREAAKNEEVVGRLLSYGQQIEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL +LVP+Y+D RS++P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G  +
Sbjct: 524  RPLDELVPLYQDPRSEMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLILKSGRNL 583

Query: 597  D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                               ++LIP DD  TY L +   T+ +FQ+ESSGM  AL  M+P 
Sbjct: 584  HEAADGSRLYEPAPGAENQMNLIPLDDERTYELYSKARTVAVFQVESSGMMDALRRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG      +HP +D +L ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPKYCEVKNGISDRDKLHPSVDHILDETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ ++GYSL  AD+LRRAMGKKI+E MD ++ +FI+GA  NG+    A+ ++ LL KFA+
Sbjct: 704  AQEMAGYSLGGADLLRRAMGKKIQEAMDAERPKFIAGAKANGVDDKKALEVWNLLDKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQT W+K ++PVEF+A  M  ++   +K+  + Q+ ++   +   
Sbjct: 764  YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFQELKKGLGLPWD 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            PP VN     F V + R+ Y+L A+K VG    + I+EA   KPF ++ DF  R D K++
Sbjct: 824  PPCVNRSEATFDVQEGRLLYALGALKNVGVEAMKLIVEARDGKPFSNVYDFARRTDLKRV 883

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             +R LE L  AGA D    +R ++ +SLD +  Y+  V + R +   ++F    G    +
Sbjct: 884  GKRSLEMLARAGAFDELDPNRRRVFESLDALTAYSAAVHEQRQSNQSSLFGD-GGDDLPE 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--I 995
              L        + R   E + +GFY SGHPLD Y   L++  +   +E +A   G    +
Sbjct: 943  PRLPGVPDWLPAERLAEEFKAVGFYLSGHPLDDYLAPLKRKQVLTLDEVMAKAAGGACIV 1002

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++A  V S+Q++K+ +G+R  +V  S+P  +YE   F
Sbjct: 1003 KMAGTVASRQERKSARGNRFAFVQLSDPTGQYEVTMF 1039


>gi|116327113|ref|YP_796833.1| DNA-directed DNA polymerase, alpha subunit [Leptospira borgpetersenii
            serovar Hardjo-bovis L550]
 gi|116119857|gb|ABJ77900.1| DNA-directed DNA polymerase, alpha subunit [Leptospira borgpetersenii
            serovar Hardjo-bovis L550]
          Length = 1176

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1044 (35%), Positives = 593/1044 (56%), Gaps = 31/1044 (2%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            ++  ++    F HL +H++YS+L+GA+ +  ++  +  +   ++A+TD  N+F A+EF  
Sbjct: 1    MSLIMQ---DFAHLHLHTNYSMLDGAIRIKELMQHVKENGMSSVAMTDHGNMFGAVEFYN 57

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            +A   GI+PIIG +  +   +  + T   K    +   ++LL    EGY+ LI L S+ Y
Sbjct: 58   EATKQGIKPIIGSEFYVSP-NRKQETEMVKIADGSAYHLILLAKNEEGYKNLIRLSSKSY 116

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-G 179
              +   +  RI    L +    GL+ LT   +G ++R         + +      ++F  
Sbjct: 117  T-EGFYKKARIDYDLLAQ-HNGGLVCLTACLAGEVNRKILEGKIDESFQLAGKLNEIFRK 174

Query: 180  DRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +  Y+ +Q H   ++     Q+        +PLV TN+S FL ++D EA D+L+ +    
Sbjct: 175  EDFYMEIQNHGIPEQMTVAKQIYDFGKRTGIPLVVTNDSHFLKKDDQEAQDILLRIGMQK 234

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
             ++         + Y+K+  EM  +F ++PEA  NT+EI+ +    LQ    +LP F   
Sbjct: 235  RITDPMEFGFNGEFYVKSPDEMARVFPEIPEAFYNTLEISNKVDLKLQFGNYLLPEFEVP 294

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E  D     ++ L      G+  +           + + + R+ FELN I  MKF+GYFL
Sbjct: 295  EGYD----ADSYLEKLIWEGIGRKYPN-------LSPEIKDRVVFELNTIKNMKFAGYFL 343

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV D+I +AK+N IPVGPGRGS AGS+ AYAL IT+++PL+ +LLFERFLNPDR  MPD 
Sbjct: 344  IVQDYINYAKRNGIPVGPGRGSAAGSIVAYALGITNVEPLQHNLLFERFLNPDRKDMPDI 403

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC +RR+EVI Y++ +YG E+V QIITF SL AKAAL+DV R L +P+ + + + K 
Sbjct: 404  DTDFCVERREEVINYIRRRYGEEKVGQIITFNSLAAKAALKDVARVLNLPFGEANEMTKA 463

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
             PN     +  +A+   S  +     D    ++  I+Q+LEG YR    HAAG+VI   P
Sbjct: 464  FPNKLGMSI-AEALTTSSELKNFSEKDDINHKIFAIAQRLEGNYRQPGRHAAGVVISPYP 522

Query: 539  LSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            L ++VP+      + P     VTQ++   +E  GLIK D LGLK LT L  ++  + +R 
Sbjct: 523  LEEVVPLSTVAEKERPGSRSIVTQYDKNNLESIGLIKMDILGLKNLTTLDYAIKLIERRR 582

Query: 594  -VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             V++DL  IP++D  TY LL    TLGIFQLES+G+   +   Q +  ++I+AL++LYRP
Sbjct: 583  GVRIDLDEIPYNDANTYALLRKANTLGIFQLESTGITDLVAKSQVNNFDEIVALIALYRP 642

Query: 653  GPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GP+   +   Y +RK+G++++   HP  +P+LKET GV +YQEQVM I++++ G+S+ ++
Sbjct: 643  GPMGEGMLDEYLDRKSGRKQVTYPHPSCEPILKETFGVPVYQEQVMSISRVVGGFSVGDS 702

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            DVLR+AM KK  + M+K K +F+ GA K GI + +A ++FE L +F  YGFNKSH+ AYA
Sbjct: 703  DVLRKAMAKKKADLMEKLKYQFVEGAVKQGIQEKVAKDLFEQLERFGGYGFNKSHSVAYA 762

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +I+YQTA++K +Y +E+L A +  +      I K+  +AR+  I+I+ P V+     F V
Sbjct: 763  IITYQTAYLKANYTIEYLTALLASDHGKTTDIVKYINNAREMGIRILNPDVSESQASFNV 822

Query: 831  GDNR-IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D+  I + L+A+KGVG T A  I+EA      F +L+DF   +D++ +N++V E+L+ A
Sbjct: 823  IDDATIRFGLSAMKGVGETAANSIIEARDKAGNFKTLQDFALNIDTRLINKKVFEALIQA 882

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GALD FGY+R  L +S+D+I  +AQ  ++       ++F   + +F+  +  +       
Sbjct: 883  GALDSFGYTRKCLFESVDSILTFAQREQERTNEGQFSLFGVGESSFTLNLPKDAL-EWEI 941

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              +   E+ + G Y SGHPLD Y+  L+ +     E+      G+ + +A ++ SK  K 
Sbjct: 942  DEKLRREKAIAGLYLSGHPLDKYEKQLKSLRTIPIEKFDNLKSGSKVEVAGIISSKNIKL 1001

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            +++          +   E E   F
Sbjct: 1002 SKRNEEFANFKLEDRTGEIECVAF 1025


>gi|111115407|ref|YP_710025.1| DNA polymerase III subunit alpha [Borrelia afzelii PKo]
 gi|110890681|gb|ABH01849.1| DNA polymerase III, subunit alpha [Borrelia afzelii PKo]
          Length = 1161

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1036 (37%), Positives = 605/1036 (58%), Gaps = 23/1036 (2%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A 
Sbjct: 14   GMSFRAKFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AGI+PIIG +  +         +           ++LL     GY+ L++L S  YL +
Sbjct: 74   KAGIKPIIGIEAYMAKTSKFLKKHDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y
Sbjct: 131  GFYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQRH   D+     ++V+ +    +PL   N+S +++ ED  A D+++ +      S 
Sbjct: 190  LELQRHGIKDQDIVNERLVEYSKELGVPLTVANDSHYVNREDASAQDIIVCIGTGAKKSD 249

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300
            ++R ++ T + Y+K++ EM  +F+DLPEALENTV I  +   F +    PILP +     
Sbjct: 250  ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPIE 309

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             +        L    + GL+                 + R  +EL+VI RM F GYFLIV
Sbjct: 310  FN---TLGEYLEYLTLEGLK-------FRYKTLTSKIKDRAFYELSVIIRMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  ++IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDHDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+AKA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKAKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGP--KVSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSISTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+ +L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFKMLGEGRSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAMGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I++    +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLNQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F     + +       +     + S     E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKRLGQNSLFDVLESQESIQQSFNYQVLKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +         + +A  + + ++ + ++ S +  +T++ + R+ 
Sbjct: 958  LLGFYVSGHPLDPYKKAINNFSSLNVLKDLAAKKDSIVQFSGILNSVKIIQTKRNNSRMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|330504229|ref|YP_004381098.1| DNA polymerase III subunit alpha [Pseudomonas mendocina NK-01]
 gi|328918515|gb|AEB59346.1| DNA polymerase III subunit alpha [Pseudomonas mendocina NK-01]
          Length = 1176

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1068 (39%), Positives = 619/1068 (57%), Gaps = 60/1068 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +  +FVHL++H+ YSL++G + +  ++  +A    PA+A+TD +N+ S ++F + A  
Sbjct: 1    MTQ--AFVHLRLHTEYSLVDGLVRVKPLIKAVAGAGMPAVAVTDMSNMCSLVKFYKTAMG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PI G  + +   +              +  + LL   A+GY+ L EL+SR +   Q
Sbjct: 59   AGVKPICGADIWMASAEE----------DGPLTRLTLLAMNAKGYRNLTELISRGWAEGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                V I   W+++   EGLI L+G   G + +A       +AE RL  +  +F DR Y+
Sbjct: 109  SNDLVIIQRDWVKD-AAEGLIALSGAREGEVGQALLGGDEVLAEARLREWMSVFPDRFYL 167

Query: 185  NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR  R  D       V LA   E PLVATN+  F+ ++D+EAH+  + +     +   
Sbjct: 168  EVQRTSRVGDEEYLHAAVALADRVEAPLVATNDVRFIKQDDFEAHETRVCIGEGRTLDDP 227

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +Q+    LP F       
Sbjct: 228  RRPRNYSDQQYLKSAEEMWELFSDLPEALENTVEIAKRCNIDVQLGKYFLPDFPTPNGMG 287

Query: 303  IQKEEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            I    ++ LR+ +  GLE RL     +         Q Y  RL+FEL++I +M F GYFL
Sbjct: 288  I----DDYLRHASFEGLEERLEVLLPKDTPDYEAKKQVYIDRLNFELDIIIQMGFPGYFL 343

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFIQWAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDF
Sbjct: 344  IVMDFIQWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDF 403

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV RA    Y   DRL K+
Sbjct: 404  DVDFCMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSYGLADRLSKM 463

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP +    +      ++   RE    D     + ++S KLEG+ R    HA G+VI    
Sbjct: 464  IPFEVGMTLEKAYEMEEP-LREFLKNDEEAQEIWDMSLKLEGVVRGTGKHAGGVVIAPTK 522

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-- 596
            L+   P+  D      VTQF+   +E+AGL+KFDFLGL+TLT+++ +++ + +   +   
Sbjct: 523  LTDFSPIACDEEGGGLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWAMETIHRIQKRDGA 582

Query: 597  ------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  ++  IP DD +TY +L    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+
Sbjct: 583  SDEELVNIDFIPLDDKKTYDMLQKAETTAVFQLESRGMKELIKKLKPDCLEDMIALVALF 642

Query: 651  RPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLS 703
            RPGP+ + +   + NRK+G+ ++   HP      ++P+LK T G+I+YQEQVMQIAQ++ 
Sbjct: 643  RPGPLQSGMVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMG 702

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            GY+L +AD+LRRAMGKK  EEM KQ+  FI G + NGI   +A NIF+L+ KFA YGFNK
Sbjct: 703  GYTLGQADMLRRAMGKKKPEEMAKQRGGFIEGCANNGIDAELAGNIFDLVEKFAGYGFNK 762

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAY ++SYQTAW+K HYP  F+AA ++ +M N +K+    ++ R   ++I PP VN 
Sbjct: 763  SHSAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVILVEECRNMKLRIDPPDVNV 822

Query: 824  PCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRV 881
                F V  D RI Y L A+KGVG      I+E  A+  PF  L DFC+RVD +++N+R 
Sbjct: 823  SEFKFTVNDDGRIVYGLGAVKGVGEGPVEAIVECRAEGGPFKDLFDFCNRVDLRRINKRT 882

Query: 882  LESLVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            LE+L+ +GALD  G                +R  LL S++   + A+   ++  + H ++
Sbjct: 883  LEALIRSGALDRLGPYYQDELKAYQASVDKNRAVLLASMEEAVQSAEQTARSAESGHMDL 942

Query: 927  FAHEKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            F          +     K        R + E+  LG Y SGHP+D Y+  +R+   +   
Sbjct: 943  FGGLFAEPEADVYANHRKARELPIKERLKGEKDTLGIYLSGHPIDEYEGEIRRFARQRIV 1002

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            E           +A M+V+ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1003 ELKPARDTQ--TIAGMIVNLRVMKNKKGDKMGFITLDDRSGRIEASLF 1048


>gi|119953364|ref|YP_945573.1| DNA polymerase III subunit alpha [Borrelia turicatae 91E135]
 gi|119862135|gb|AAX17903.1| DNA polymerase III alpha subunit [Borrelia turicatae 91E135]
          Length = 1150

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1035 (37%), Positives = 591/1035 (57%), Gaps = 23/1035 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++    FVHL VHS YSLL+GA  + +I+ K        IA+TD  NLF A++F ++A  
Sbjct: 1    MDLKVKFVHLHVHSDYSLLDGAAKITDIVAKAKKCNMSHIALTDHGNLFGAMKFYREAKG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  +      K   +          ++ L     GY+ L++L S  YL + 
Sbjct: 61   AGIKPIIGMEAYMS--STSKHIKKNDELGRPYYHLIFLAKNELGYKNLLKLTSVSYL-EG 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    +++  +EGLI  +    G I +    N    A+  +L FK +FGD  Y+
Sbjct: 118  FYYRPRIDKEDIEKY-SEGLICTSACIGGIIPQLILANKFDDAKNEILWFKSVFGDDFYL 176

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH    +     ++V  +    + L  +N+S ++++ED  A D+++ +      S  
Sbjct: 177  ELQRHGIKQQDIVNEKLVAYSRELNVSLSVSNDSHYVNKEDATAQDIIVCIGTGAKRSDP 236

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRFIEKECD 301
            +R ++ T + YLK + EM  +F DLPEAL NT++IA +C+ F ++   PI P +      
Sbjct: 237  NRLKMETDEFYLKTQEEMCKLFRDLPEALANTLKIAEKCNEFEIKFPGPIFPEYQVPSEF 296

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D        L    + GL+ R A             + R  +EL+ I +M F  YFLIV 
Sbjct: 297  D---TLSQYLEYLTLEGLKFRYAN-------VTDSIKDRAFYELSTIIKMGFEAYFLIVW 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++A  N IPVGPGRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID
Sbjct: 347  DFIKFAHDNGIPVGPGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERVSMPDFDID 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC + RDEVI+YV  KYG ++VAQIITFG+L+ KA  +DVGR L +P+++ + L KLIP+
Sbjct: 407  FCFEGRDEVIKYVTRKYGEDKVAQIITFGTLKPKAVFKDVGRVLDIPFTESNELTKLIPD 466

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P   VSL+ +  D   +         + L+E +  LEG+ R+ STHAAGIVI   PL+ 
Sbjct: 467  GP--KVSLREVFKDKALKAYLNKGVVYNELMEAALVLEGMNRYVSTHAAGIVIARTPLTD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
             VP+Y+D + +   TQ+ M  +E  GL+K DFLGLKTLTL++ + + +        ++ I
Sbjct: 525  YVPLYKDYKQNTVSTQYTMDLLEDCGLVKMDFLGLKTLTLIKNAENLIRITNPNFSIANI 584

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
               D +T+ +L+   +  +FQ ES GM+Q L   +PD IED+IAL +LYRPGP+  I  +
Sbjct: 585  SDSDVKTFKMLSEGRSASVFQFESEGMQQVLREAKPDSIEDLIALNALYRPGPMQFIPQF 644

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K G ++I   HP +  +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK 
Sbjct: 645  IAAKTGTKRIRYPHPDLKEVLKPTYGVIVYQEQVMEVARIIGGFSLGKADILRRAMGKKK 704

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            ++EM+K K  FI GA   G  +T+A +IFELL  FA YGFNKSHAAAY++I+YQTA++K 
Sbjct: 705  EDEMNKMKVDFIKGALSKGYDETLANDIFELLKPFAGYGFNKSHAAAYSLIAYQTAYLKA 764

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +YP  F+AA++T E++N EK+  + ++A+   I ++ P +N    +F V    I Y L  
Sbjct: 765  NYPENFMAANLTNEINNTEKLSYYIEEAKSMGINVLKPDINQSFKEFSVVGLNISYGLNG 824

Query: 842  IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK +G      I+     +  + S EDF  RVD K +N++ LE+ + +G  D  G +R  
Sbjct: 825  IKNIGGLIVDLIITERQENGEYKSFEDFIRRVDDKVINKKFLEAAIKSGLFDSLGQNRKT 884

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRV 958
            L ++LD +  +      ++     ++F     +           F   +       E+ +
Sbjct: 885  LFENLDKLIDFVIKDRNDKKLGQNSLFGSIGSQDAIQQSFNYHVFEEYSYPELLRFEREL 944

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGW 1017
            LGFY SGHPLD YKP L +       E +A  +   ++ A  +   +  +T++ + R+ +
Sbjct: 945  LGFYVSGHPLDHYKPELERFTNFNVLEDLAVKKDTTVKFAGSLNVVRVIRTKRNNARMAF 1004

Query: 1018 VTFSEPAKEYEANFF 1032
                +   E +   F
Sbjct: 1005 GVIEDFKGEMDIIVF 1019


>gi|238917602|ref|YP_002931119.1| DNA polymerase III subunit alpha [Eubacterium eligens ATCC 27750]
 gi|238872962|gb|ACR72672.1| DNA polymerase III subunit alpha [Eubacterium eligens ATCC 27750]
          Length = 1188

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1077 (32%), Positives = 569/1077 (52%), Gaps = 61/1077 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+G+  +  I  +       ++AITD   ++  +EF + A  AGI+P
Sbjct: 2    SFTHLHVHTEYSLLDGSSKIKEITKRAKELGMDSLAITDHGVMYGVIEFYEAAKKAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC++ +                     +VLL     GYQ L+++VS+ +  +      
Sbjct: 62   VLGCEVYVAPGSRFDK--GAGQSEDKYNHLVLLAENNTGYQNLMKIVSKGFT-EGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L+E   EG+I  +   +G + R       + A    L  + +FG    ++ LQ 
Sbjct: 119  RVDKEVLREYH-EGIIATSACLAGEVQRYLSRGMYETARDAALELQDIFGKGNFFLELQD 177

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +++    Q++++     + LV TN+  +   +D +AHD+L+ +     +S ++R R
Sbjct: 178  HGIAEQHYVNPQLMRMHNETGIELVCTNDVHYTYADDVDAHDILLCIQTGKKLSDENRMR 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  YLK+  EM  +F   PEA+ENT +IA RC+  ++     LP F     +   K 
Sbjct: 238  YEGGQFYLKSEEEMAELFKYAPEAVENTHKIAERCNVEIEFGVTKLPAFDVP--EAYGKN 295

Query: 307  EENELRNKAVAGLEVRLAQG------------------------AIAKGYHAQDYRQRLD 342
                L      GL+ R                             I +   + D  QRL 
Sbjct: 296  SWVYLNALCYEGLKKRYPDKTADICIEDIIEQAKASIVADRKDVVIKRAEDSNDIFQRLS 355

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +EL+VI  M +  YFLIV D+I +AK ++IPVGPGRGS AGS+ +Y L IT +DP++++L
Sbjct: 356  YELSVIYSMGYVDYFLIVWDYINYAKTHDIPVGPGRGSAAGSLVSYCLGITTLDPVKYNL 415

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            +FERFLNP+R+SMPD D+DF  + R +VI YV  KYG E V QIITFG++ A+A ++DVG
Sbjct: 416  VFERFLNPERVSMPDIDVDFAPEGRQKVIDYVIEKYGKECVCQIITFGTMAARAVIKDVG 475

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA-------IADDSRFREARLADPSVDRLLEIS 515
            R + +PY+ VD + K+IP      +           I  ++ F+    AD +V  L++ +
Sbjct: 476  RVMDLPYAMVDNIAKMIPQKVGVTIDSAMNGDADRDIKPNAEFKALYEADETVRDLIDKA 535

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            ++LEGL RHAS HA+G++I  + + + VP+      ++ VTQF    +E  GL+KFDFLG
Sbjct: 536  KRLEGLPRHASVHASGVLISQKDVGEYVPVAVGA-DNVKVTQFEGPTLEHLGLLKFDFLG 594

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            L+ LT++Q++     Q      +  IP++D   +  ++     GIFQLES GM+  ++ +
Sbjct: 595  LRNLTVIQQTEKCEQQIDPAFSVDNIPYNDKAVFECISQGKCAGIFQLESGGMKNFMKEL 654

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
            +PDC+ED+IA +SLYRPGP+D I  Y   K     I    P ++P+L+ T G ++YQEQV
Sbjct: 655  KPDCLEDLIAGISLYRPGPMDFIPQYIKGKENAGNITYECPQLEPILEPTYGCMVYQEQV 714

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAV 747
            MQI + L+GYS   +D +RRAM KK  + M+++++ F+         G  KNGIS+  A 
Sbjct: 715  MQIVRDLAGYSWGGSDNVRRAMAKKKLDVMEQERQNFVYGNEANGVPGCIKNGISEQTAN 774

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             I++ +  FA Y FNKSHAA YAV++YQTA++K H+PV+++A  ++   D   K+ ++  
Sbjct: 775  KIYDEMMDFAKYAFNKSHAACYAVVAYQTAYLKVHFPVQYMAWLISSVTDKTSKVAEYIL 834

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLE 866
             AR+  I I+P  VN    DF V    I +   A+K +G  T   I+E    +  F S++
Sbjct: 835  AAREMGISILPVDVNKSVADFGVEGKNIRFGFNAVKSMGRPTITAIIEERTNNGDFHSMQ 894

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF +R+ +  +N+R +E L+ AGA D FG +R  ++   + +   A    K+  +   ++
Sbjct: 895  DFITRM-AGVINKRTVEHLILAGAFDTFGNTRRGMMNVYERMIDSAVKQNKDAISGQMSL 953

Query: 927  --FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
              FA E+   S ++ +            E E+ VLG Y +GHPLD Y  +  K       
Sbjct: 954  FDFASEEDKQSLEMRVPDIQEFEKEDLLEREKEVLGVYVTGHPLDEYTGMWEKHISARST 1013

Query: 985  ESV--------ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +          + G+   +  ++ + +   T  G ++ ++T  +     E   FP
Sbjct: 1014 DFLIDEETGQAKLMNGSKQTIGGLISNIKVITTGSGQQMAYLTIEDFVGSVEVIMFP 1070


>gi|332140484|ref|YP_004426222.1| DNA polymerase III subunit alpha [Alteromonas macleodii str. 'Deep
            ecotype']
 gi|327550506|gb|AEA97224.1| DNA polymerase III subunit alpha [Alteromonas macleodii str. 'Deep
            ecotype']
          Length = 1154

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1042 (39%), Positives = 592/1042 (56%), Gaps = 33/1042 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  F+HL+VHS +S+++G   +  IL K+AA + PA+AITD  N+   ++F  +A   GI
Sbjct: 2    SSPFIHLRVHSDFSMMDGLNKVKPILGKVAALEMPAVAITDQMNMCGLVKFYSEAHNLGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIG    +  +                  + LL    EGY+ +  L+S+ YL      
Sbjct: 62   KPIIGTDFWVTNE----------AFGDEPFRLTLLAMNNEGYKNITILISKAYLRGHLAH 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I  +WL E   EG+I+L+G   G +      N++++ +  L  ++  F DR Y+ L 
Sbjct: 112  RAVIDQAWLAE-HAEGVIILSGAQHGDVGVGLMKNNAKLLDSALAFYESYFPDRFYLELI 170

Query: 188  RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R     +       V+LA    LP+VATN   F+  E +EAH++ + +     +    RP
Sbjct: 171  RTGRQGEEDYLHHAVELAEQRGLPVVATNEVCFIDREGFEAHEIRVCIHDGYTLDDNRRP 230

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R +   YL+   EMV +FSD+PEA+ENTVEIA+RC+  ++++      +   +      
Sbjct: 231  KRYSEQQYLRTSEEMVELFSDIPEAIENTVEIAKRCNVTVRLNE-----YFLPQFPTGGM 285

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E+ L   +  GLE RL         +     +Y  RL  EL VI +M F GYFLIV +
Sbjct: 286  TTEDFLVKVSEEGLEERLEFLFPDEEVRKAKRPEYDDRLRIELEVINQMGFPGYFLIVME 345

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 346  FIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP D
Sbjct: 406  CMDRRDEVIDHVAELYGRQAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPD 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +  +A   + +  E   +D  V  L+++++ LEG+ R+A  HA G+VI    ++  
Sbjct: 466  PGMTLE-KAFKAEPQLPEVYESDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPTTITDF 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
             P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++Q ++D + + + V VD+S I
Sbjct: 525  SPLYCDDEGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMIKEGKNVDVDISAI 584

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
            P +D +++  L    T  +FQLES GM++ ++ ++PDC EDIIALV+L+RPGP+ + +V 
Sbjct: 585  PLEDPKSFRTLQNAETTAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSGMVD 644

Query: 661  ------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
                  +   +         H  +  +L+ T G+I+YQEQVMQIAQ ++GYSL  AD+LR
Sbjct: 645  NFIDRKHGREEISYPDAEYQHECLQEILEPTYGIILYQEQVMQIAQEMAGYSLGGADLLR 704

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ+  F  GA  N I   +A+ IF+L+ KFA YGFNKSH+AAYA++SY
Sbjct: 705  RAMGKKKPEEMAKQRGTFAEGAKGNNIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSY 764

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833
            QT W+K HYP EF+AA M+ +MDN +KI     +  +  I+I+PP +N     F V    
Sbjct: 765  QTLWLKVHYPAEFMAAVMSADMDNTDKIVTLVDECERMGIEILPPDLNAGKYKFTVDSKG 824

Query: 834  RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            RI Y + AIKGVG      I+EA      F  L DFC++VD K++N+RVLE LV AGA+D
Sbjct: 825  RIVYGIGAIKGVGEGPIEAIIEAREIQGAFKDLFDFCAKVDIKRVNKRVLEKLVLAGAMD 884

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVR 951
              G  R  L+ +L      A    K  +    ++F          +            V 
Sbjct: 885  NLGPHRATLMATLPEALAAAGQHAKAESFGQSDMFGLLTTEPEEVQQAFADVPEWPEKVW 944

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
             E E+  LG Y +GHP++ Y   LR        +   T +        +V+  +    ++
Sbjct: 945  LEGEKDTLGLYLTGHPINQYADELRYYTDGRLVDLKPTNKDQLASAVGLVLGVRVMTNKR 1004

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G R   VT  + +   +  FFP
Sbjct: 1005 GRRWAIVTLDDKSARMDVRFFP 1026


>gi|315924608|ref|ZP_07920827.1| DNA-directed DNA polymerase III alpha subunit [Pseudoramibacter
            alactolyticus ATCC 23263]
 gi|315622138|gb|EFV02100.1| DNA-directed DNA polymerase III alpha subunit [Pseudoramibacter
            alactolyticus ATCC 23263]
          Length = 1178

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1055 (38%), Positives = 586/1055 (55%), Gaps = 48/1055 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VHS YSLL+G   +++ +         A+A+TD   LF  +EF +   A GI P
Sbjct: 4    SFTHLHVHSEYSLLDGFGRISDYVQTAKEMGMNALALTDHGVLFGGIEFYKACVARGINP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +  +  L       +       ++LL    EGY+ L ++VS+ ++ D      
Sbjct: 64   IIGCEVYVAPRTLLDKEAGKDSRP---YHLILLAENNEGYRNLSKIVSKGFI-DGFYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            RI    L+    EG+I L+   +G I RA        AE    T+  +FG D  ++ +Q 
Sbjct: 120  RIDHDTLRRY-REGIICLSACIAGEIPRAVLEEQPARAEALCETYIDIFGKDHFFLEIQD 178

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR   +      +  LA  + + L ATN+  ++ ++DYEAHDVL+ +   + V + DR R
Sbjct: 179  HRLSKEAKVREFLFHLADKYGIGLAATNDCHYVRQDDYEAHDVLLCIGTGSTVDETDRMR 238

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  YLK+  EM ++F D PEAL NT +IA RC     + +  LP+F   E      E
Sbjct: 239  YANDQFYLKSPEEMAAMFPDHPEALANTQKIADRCHVTFDLESAHLPKFELPEGYT---E 295

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + +R+   AGL                + R+R+D+EL  I  M F  YFL+V DFI +
Sbjct: 296  AGDYVRHLCEAGLAK-------RYDTITPEIRERMDYELKTIHTMGFDDYFLVVWDFIHY 348

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK +NIPVGPGRGS AGS+ AYAL IT +DPL+++LLFERFLNP+R++MPD D DFC +R
Sbjct: 349  AKTHNIPVGPGRGSAAGSLAAYALDITTLDPLQYNLLFERFLNPERVTMPDIDCDFCYER 408

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG +RVAQIITFG++ A+ A+RDVGR L +PY+QVD++ K IP  P   
Sbjct: 409  RQEVIDYVIRKYGKDRVAQIITFGTMAARGAVRDVGRVLGIPYAQVDKVAKEIPMRPGQS 468

Query: 487  VSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            VS+   I ++   ++   +D  V RLL +S+K+EGL RHASTHAAG+VI D PL++ VP+
Sbjct: 469  VSIHEAIEENPDLKQMADSDAEVRRLLAMSEKMEGLARHASTHAAGVVISDAPLTEYVPL 528

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
            YR+   D   TQ+ M  +E  GLIK DFLGL+TLT++  ++  + + RG+ VD+  I   
Sbjct: 529  YRN--GDAITTQYTMNLLEDLGLIKMDFLGLRTLTVIADAVANIQESRGIAVDIDHIDMH 586

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D   Y ++ +   LG+FQLES GM   +  +QP   EDIIA +SLYRPGP+D I  Y   
Sbjct: 587  DAGVYEMIASGDCLGVFQLESRGMIAFMRELQPQTFEDIIAGISLYRPGPMDQIPRYIAN 646

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K   E I   H  + P+L  T G ++YQEQVMQI + L+G+S+  +D++RRAM KK  E 
Sbjct: 647  KKDPEHIAYTHEALRPILNVTYGCMVYQEQVMQIFRDLAGFSMGRSDLVRRAMSKKKSEV 706

Query: 725  MDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            MD + E FI             GA   GI +  A  I+E +  FA Y FNKSHAAAYAVI
Sbjct: 707  MDAEGEVFIHGERDTDGQVVVPGAVAKGIPEAAARRIYEEMKDFAKYAFNKSHAAAYAVI 766

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +YQTAW+K HYP EF+AA M+  MDN +KI ++  + ++  I+++ P VN     F V  
Sbjct: 767  AYQTAWLKRHYPAEFMAALMSSVMDNEKKISQYIDNCKRRGIRVLLPDVNISRRKFSVEI 826

Query: 833  NR-----IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            N      +   L AIKG+G      I+ A   +  F    DFC +VDS  +N++   +L+
Sbjct: 827  NADGRENVRMGLGAIKGLGDKPIAAIVNARQTEGAFTGFRDFCEKVDSHAVNKKAAANLI 886

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AGA D  G  R +++   D I +     +++R +   ++    +       T  +    
Sbjct: 887  LAGAFDFLGIDRARMVLGSDLIVQQVAEEKQDRLSGQMSLLDMGELNAYKGDTFPEAPPF 946

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK------GYEESVA--TIRGNNIRLA 998
            + + +   E+ VLG Y SGHPL+ Y  IL             YE+ +A     G  + + 
Sbjct: 947  SKAEKLAREKEVLGLYVSGHPLEHYVGILSSETNLNSGMMDSYEDLLASGIPDGGRVTVG 1006

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +V   + + T+  +++ ++T  +     E   FP
Sbjct: 1007 GLVDQLKVQLTKTNAQMAFLTLEDLYGRMEVVVFP 1041


>gi|237729490|ref|ZP_04559971.1| DNA polymerase III subunit alpha [Citrobacter sp. 30_2]
 gi|226909219|gb|EEH95137.1| DNA polymerase III subunit alpha [Citrobacter sp. 30_2]
          Length = 1160

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1049 (40%), Positives = 617/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G    +          + +     +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   AGIKPIVGADFHV----------RSELLGDELTQLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G +   I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F +  ++
Sbjct: 110  GAEGPVIDRDWLVEL-KEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPNCYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA T  LP+VATN+  FL   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRQDEENYLHAAVALAETRGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +FSD+PEAL+NTVEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEDEMCELFSDIPEALQNTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL          AQ    Y +RL+ EL VI +M F GYFLI
Sbjct: 284  GDMTTEDFLVAKSREGLEERLEFLFPDPEVRAQKRPPYDERLEVELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D +   PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K    
Sbjct: 523  TDFAPLYCDEQGLHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA K G+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRGTFEEGAKKRGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA  +   F  L D C+R D KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDIKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL++  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLNDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|225548617|ref|ZP_03769664.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 94a]
 gi|225370647|gb|EEH00083.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 94a]
          Length = 1161

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1036 (37%), Positives = 604/1036 (58%), Gaps = 23/1036 (2%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A 
Sbjct: 14   GMSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AGI+PIIG +  +                     ++LL     GY+ L++L S  YL +
Sbjct: 74   KAGIKPIIGIEAYMAKTSKFLKKQDDLEKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y
Sbjct: 131  GFYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQRH   D+     ++V+ +    +PL A N+S +++ ED  A D+++ +      S 
Sbjct: 190  LELQRHGIKDQDIVNERLVEYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSD 249

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300
            ++R ++ T + Y+K++ EM  +F+DLPEALENTV I  +   F +    PILP +     
Sbjct: 250  ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVE 309

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             +        L +  + GL+                 + R  +EL+VI  M F GYFLIV
Sbjct: 310  FN---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGP--KVSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I++    +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F   +           + F   + S     E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQAFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|220931162|ref|YP_002508070.1| DNA polymerase III catalytic subunit, DnaE type [Halothermothrix
            orenii H 168]
 gi|219992472|gb|ACL69075.1| DNA polymerase III catalytic subunit, DnaE type [Halothermothrix
            orenii H 168]
          Length = 1122

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1040 (35%), Positives = 604/1040 (58%), Gaps = 38/1040 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL VH+ YSLL+GA+ L +++ K      P +AITD   L+ A++F + A  
Sbjct: 1    MTAN--FVHLHVHTEYSLLDGAIRLKDLVKKTKEYDMPGVAITDHGVLYGAIDFYKLARQ 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIGC++ +      K   + +        ++L+    EGY  L ++VSR +L + 
Sbjct: 59   YGIKPIIGCEVYLTPSSFRKKDTRER------YHLLLIAQNREGYHNLTKIVSRSWL-EG 111

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 R+    L +   +GLI L+    G I +    +  Q AE+ +  ++ +FG +  Y
Sbjct: 112  FYYKPRVDKDLLYQ-HRKGLICLSSCLQGEIPQLILKDRLQEAEQAIKEYEAIFGRESFY 170

Query: 184  VNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ H   D     S++++L+     PLV TN+S +L+ ED   HDVL+A+     ++ 
Sbjct: 171  LELQDHNLGDEKLVNSRLIELSNKLGTPLVVTNDSHYLNREDASLHDVLLAMQTGKTIND 230

Query: 243  KDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            ++R   T  + Y K+  EM S+F D+ +   NTV+IA         +   +P F + + D
Sbjct: 231  ENRLSFTGEEFYFKSPDEMKSLFPDIEDTYLNTVKIAEMTDIDFDFNTFYIPDFPDAKGD 290

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               K     LR+K   GL+ +  +         ++ R+RL +EL +I  M +  YFLIV 
Sbjct: 291  ---KTPVEILRDKCQQGLKEKGLEDN-------KEARERLQYELEIIEEMGYVSYFLIVW 340

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DF+ +A++  I VGPGRGS AGS+ +Y L IT I+PL++ L+FERFLNP+R++MPD DID
Sbjct: 341  DFVNFARQKGIRVGPGRGSAAGSLVSYLLGITKINPLKYGLIFERFLNPERVTMPDIDID 400

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RRDE+I YV+ +YG E+VAQI TFG++ A+AA+RDVGR L +P  +VDR+ K++  
Sbjct: 401  F-DERRDEIIEYVKQRYGREKVAQIGTFGTMAARAAIRDVGRVLDIPLRKVDRIAKMV-- 457

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P      +A+  +    +    D  V RLL+ + ++EG+ RH STHAAG++IG   LS 
Sbjct: 458  -PGRVTIKEALKMNDNLNKLYQQDSEVKRLLDYACRVEGMPRHISTHAAGVIIGPGDLSN 516

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
            ++P+    + +  +TQF+M+ +E+ GL+K DFLGL+ LT++ K+L+ +++R   ++D+  
Sbjct: 517  IIPLQT--QDENIITQFHMENLEELGLLKMDFLGLRNLTIINKTLNLISKRYGREIDVDN 574

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D   Y +L    T G+FQ+ES   +     ++P+   D+IAL++L RPGP+ + +V
Sbjct: 575  IPLNDDRVYKMLQEGKTPGVFQMESRLFQDLNRRLKPEKFSDLIALLALGRPGPLGSNLV 634

Query: 661  YNNRKNGKEKIV--SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
                K+   +I    +HP ++P+L+ET G+I+YQEQVM+IA  L+GY++ EAD+LRR MG
Sbjct: 635  EQYIKSRHGEIEPSYLHPELEPILEETFGLILYQEQVMEIASKLAGYTMGEADLLRRGMG 694

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK KE + K++ERF+ GA KNGI K +A  IF+ +  FA YGFNKSH+ AYA+++YQTA+
Sbjct: 695  KKKKELISKERERFVEGAVKNGIEKEVAHKIFDQMEYFAGYGFNKSHSTAYAMLAYQTAY 754

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYY 837
            +K +YP EF+AA ++  M+N++K+ ++ ++ ++  ++++PP VN    +F    D  I +
Sbjct: 755  LKANYPSEFMAALLSTVMNNLDKVGQYIRECQEMGLRVLPPDVNRSGFEFETTPDGDISF 814

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L AIK VG      I+E    +  + SLEDF  RVD+ ++N +V+ESL+ AG  D F  
Sbjct: 815  GLKAIKNVGIKAIEAIIEERNRNGNYSSLEDFIERVDTGRVNLQVIESLIKAGVFDSFNT 874

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKH---ENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
             R Q+L   + I +      +NR        ++F+ ++  ++  I   +        R  
Sbjct: 875  YRSQMLIKYEEIYEKLGSRSRNRAQGQTSFFDLFSEDEKFYNQSIEYPEIEELPLEERLN 934

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+  LG Y S HPLD +K  +        ++      G+ + +  +VV  ++  TR   
Sbjct: 935  QEKEYLGIYLSAHPLDPFKDKIDHFISTTSQDIKDYE-GDKVTIGGVVVDFKEHITRTNK 993

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
            ++ ++T  +     +   FP
Sbjct: 994  KMAFLTLEDWLGNIKVVVFP 1013


>gi|157376278|ref|YP_001474878.1| DNA polymerase III subunit alpha [Shewanella sediminis HAW-EB3]
 gi|157318652|gb|ABV37750.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 1157

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1047 (39%), Positives = 595/1047 (56%), Gaps = 37/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G   +  I+ K+     PA+A+TD  NL   ++F      
Sbjct: 1    MSD-PRFVHLRVHSDFSMSDGLAKVKPIIGKVTELGMPAVALTDQTNLCGLVKFYGACHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+P+IG    + +                + S+ +L    +GY  L  L+S  YL   
Sbjct: 60   AGIKPLIGADFWVKVPG----------FDKDLCSVTVLAMDNDGYLNLTLLISDAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL +  ++GLI+L+GG  G + RA    +    +  +  ++  F DR Y+
Sbjct: 110  IDDRAVIDHGWLAKY-SKGLILLSGGRLGDVGRALLKGNQAQVDSLVEFYQTHFPDRYYL 168

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R     V+LA    LP+VATN  +F S + +EAH++ +A++    ++  
Sbjct: 169  ELLRTGRPDEERYLHMAVELATEKGLPVVATNQVVFNSPDLFEAHEIRVAISDGFTLADP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  + + Y K+  +M  +F D+PEA++NTVEIA+RC+  +++               
Sbjct: 229  RRPKKYSAEQYFKSSEQMCELFEDIPEAIDNTVEIAKRCNVTVRLGEYF-----LPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L   +  GLE RL         +      Y +RLD EL V+ +M F GYFLI
Sbjct: 284  GDLSIEDFLVEVSEKGLEERLEFLFPDPEVRAEKRPAYDERLDVELKVVNQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW K  +IP+GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWGKDQDIPIGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ K++
Sbjct: 404  IDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   +   +E+  AD  V  L+++ + LEG+ R+A  HA G+VI    +
Sbjct: 464  PAEPGMTL-AKAFEVEPALQESYDADEEVKDLIDMCRTLEGVTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  +       
Sbjct: 523  TDFAPIYCDAEGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPKLKRLGKD 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PVRIESIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +             H  +  +L+ T G+I+YQEQVMQIAQ+L+GYSL
Sbjct: 643  LQSGMVDNFIERKHGREAVSYPDAEYQHESLQWVLEPTYGIILYQEQVMQIAQVLAGYSL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NGI   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRGTFEEGAINNGIDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA M+ +MDN +KI     +  +  + ++PP VN   + 
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMSADMDNTDKIVILVDECERMGMPLLPPDVNKGLLK 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F V D  +I Y + AIKGVG      I+ A  D PF  L DFC+RVD KKLN+R++E L+
Sbjct: 823  FNVDDEGKIVYGIGAIKGVGDGPVESILSARKDGPFKDLFDFCARVDLKKLNKRIMEKLI 882

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945
             AGALD  G  R  +L +L    + A    K       ++F        D K    + + 
Sbjct: 883  CAGALDNLGPHRAAMLATLPEAIRAADQNAKAEAIGQHDMFGLLNSDPEDVKQQFVECTP 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                V  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ +
Sbjct: 943  WPDKVWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVVATR 1002

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++GS++G VT  + +   E   F
Sbjct: 1003 VMMTKRGSKMGLVTLDDKSARLEVMLF 1029


>gi|145300046|ref|YP_001142887.1| DNA polymerase III, alpha subunit [Aeromonas salmonicida subsp.
            salmonicida A449]
 gi|142852818|gb|ABO91139.1| DNA polymerase III, alpha subunit [Aeromonas salmonicida subsp.
            salmonicida A449]
          Length = 1161

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/1049 (40%), Positives = 613/1049 (58%), Gaps = 38/1049 (3%)

Query: 5    LEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +  + P F+HL+VHS +S+++G   +N I+   AA+  PA+A+TD  N+   + F   A 
Sbjct: 1    MTMAEPRFIHLRVHSDFSMVDGLQKINPIVGAAAANNMPALALTDQMNMCGLVRFYGAAH 60

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
              GI+PI+G    +          Q          + LL    +GYQ +  L+SR Y   
Sbjct: 61   GKGIKPIVGADFWV----------QSSELGDEQFRLTLLAMDNDGYQNITLLISRGYQRG 110

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
              +    I   WL +   +G+I+L+GG  G + +     + Q+ E  L  ++  F D  Y
Sbjct: 111  HVQGRPVIDKEWLTD-HAKGVIVLSGGREGDVGKFLLKGNRQMTESCLAFYQTHFPDAYY 169

Query: 184  VNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L R    D        V +A   ELP+VATN  +FL+ ED++AH++ +A+     +  
Sbjct: 170  LELLRTGRPDEEVYLHMAVAIATEFELPVVATNEVVFLNAEDFDAHEIRVAIHDGYTLMD 229

Query: 243  KDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            K RP R +P  YL+++ EM  +F+D+PEALENTVEIA+RC+  +++       +      
Sbjct: 230  KRRPRRYSPQQYLRSQEEMAELFADIPEALENTVEIAKRCNVTVRLGE-----YFLPNFP 284

Query: 302  DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  E+ L  K+  GLE RLA        +     +Y +RL+ EL VI +M F GYFL
Sbjct: 285  TGDMTTEDFLVAKSKEGLEERLAFLFPDPAVRAVKRGEYDERLEIELKVINQMGFPGYFL 344

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF
Sbjct: 345  IVMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 404

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC DRRDEVI +V + YG + V+QIITFGS+ AKA +RDVGR L   Y  VDR+ KL
Sbjct: 405  DVDFCMDRRDEVIEHVSDMYGRDAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKL 464

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP DP   +  +A   + +  E    D  V  L++++++LEG+ R+A  HA G+VI    
Sbjct: 465  IPPDPGMTL-AKAFEAELKLPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTK 523

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----G 593
            ++   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R      
Sbjct: 524  ITDFAPLYCDDSGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGK 583

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              VD++ IP  D +++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPG
Sbjct: 584  PPVDIAAIPIHDKKSFDLLQRFETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPG 643

Query: 654  PIDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V  +  RK+GKE I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+
Sbjct: 644  PLQSGMVDNFIERKHGKEAISYPDEKWQHESLKPILEPTYGIILYQEQVMQIAQVLAGYT 703

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK   EM KQ+  F  GA KNGI   +AV IF+L+ KFA YGFNKSH+
Sbjct: 704  LGGADMLRRAMGKKNPAEMAKQRSGFEEGAVKNGIDGELAVKIFDLVEKFAGYGFNKSHS 763

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+KTH+P EF+AA MT +MDN +KI     + ++  + ++PP VNT   
Sbjct: 764  AAYALVSYQTLWLKTHFPAEFMAAVMTADMDNTDKIVTLVDECQRMGLTVIPPDVNTGRY 823

Query: 827  DFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLES 884
             F V  D  I Y + A+KGVG      I+ A   D PF  L DFC+RVD KK+N+RV+E 
Sbjct: 824  RFSVNEDGHIVYGIGAVKGVGEGPIDAILSARDQDGPFRDLFDFCNRVDIKKINKRVMEK 883

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKF 943
            L+ +GA+D  G  R  L+ +L+   + A+   K +     ++F        D K      
Sbjct: 884  LILSGAMDRLGPHRAALMATLEEAMRAAEQHAKAQAVGQVDMFGVLTQEIDDVKKAFANV 943

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                  V  E E+  LG Y +GHP++ Y   LR+       +   T R      A +V++
Sbjct: 944  PHWPDKVWLEGERETLGLYLTGHPINQYSGELRRYTSGRLCDLHPTSRDTVTTAAGLVIA 1003

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+++G  T  + +   +   F
Sbjct: 1004 ARSMVTKRGNKMGIFTLDDRSGRLDVTLF 1032


>gi|319898845|ref|YP_004158938.1| DNA polymerase III alpha subunit [Bartonella clarridgeiae 73]
 gi|319402809|emb|CBI76360.1| DNA polymerase III alpha subunit [Bartonella clarridgeiae 73]
          Length = 1162

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 587/1030 (56%), Positives = 754/1030 (73%), Gaps = 8/1030 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS+YSLLEGAL +  I+    +D  PAIAITDTNNLF ALEFSQ   A GIQ
Sbjct: 16   PRFIHLRVHSAYSLLEGALKIKQIIQHAISDHMPAIAITDTNNLFGALEFSQYCFADGIQ 75

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGCQL ID  D    ++  K   P+  S IVL  ++  GY  L+ LVSR YL      
Sbjct: 76   PIIGCQLAIDFDDENCNSSLAKLRHPSDYSSIVLFAASETGYAHLVRLVSRAYLDKNDND 135

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I    L     EG+I LTGG SGPI+ A   +  + A +RL   KK+FGDRLYV LQ
Sbjct: 136  LPHIKADLLL-THHEGIIALTGGRSGPINLALAEDRKERAVERLTYLKKIFGDRLYVELQ 194

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RH  YDR  E+ +++LAYT+E+PLVATN + FL++E Y AHD LMAVA   VVS  DR R
Sbjct: 195  RHGSYDRKVEAVLIELAYTYEIPLVATNEAFFLNKEGYAAHDALMAVAEGQVVSDPDRKR 254

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--K 305
            VTPDHYLK++ EM+S+FSDLPEALEN+VEIA RC     +  PILPRFIE+  D     +
Sbjct: 255  VTPDHYLKSQDEMISLFSDLPEALENSVEIALRCHAYAPIRKPILPRFIEQSADTSSVLE 314

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E  EL N+A AGL++RL    +A+GY   DY QRL++E+++I RM+FSGYFLIV+DFI+
Sbjct: 315  SEAKELLNQAEAGLKMRLETIGLAEGYTIADYEQRLNYEISIITRMQFSGYFLIVSDFIK 374

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQ+
Sbjct: 375  WAKAHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDFCQE 434

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVIRYVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY QVD L KL+P  P  
Sbjct: 435  RREEVIRYVQKKYGCDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLVPATPGS 494

Query: 486  PVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             V   QAI D+ +F E +  DP + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVP
Sbjct: 495  NVELAQAIIDEPKFEEEKKKDPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVP 554

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            MYRD RSD+PVTQFNMK++E++GL+KFDFLGLKTLT+L+ ++DF+A++G KVDLS IP +
Sbjct: 555  MYRDPRSDMPVTQFNMKYVEQSGLVKFDFLGLKTLTVLKMAVDFVARKGTKVDLSHIPLN 614

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY +++   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN R
Sbjct: 615  DEVTYAMMSRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNIR 674

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+ +E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKKI +E
Sbjct: 675  KHKEEEITSIHPKIDHLVKETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRAMGKKIHKE 734

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M +Q+ RF+SGA   GI K  A  IF+LLAKFADYGFNKSHA AYA++SY TA+MK H+P
Sbjct: 735  MQEQRTRFVSGAVDGGIDKDQANVIFDLLAKFADYGFNKSHATAYAIVSYHTAYMKAHHP 794

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAASMT +M N +K+  F ++A +  I+++ P V T    F+VG+N IYYSL+A+KG
Sbjct: 795  VEFLAASMTYDMTNTDKLNDFWREALRLGIEVIAPCVQTSHRIFEVGENCIYYSLSAVKG 854

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG     HI+    DKPF  LEDFC R+D + +N+R +ESL++AGA DCF  +R  LL S
Sbjct: 855  VGDVVVDHIVACRGDKPFKDLEDFCERIDPRIVNKRAMESLIYAGAFDCFNVAREVLLAS 914

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L  +   A  +  N ++   +IF    G     I L + S  + + +   E + +GFYFS
Sbjct: 915  LVTLNARALRILDNNSSGQIDIFGMIGGLKEPLI-LSQASPWSPAEKLHYEFQAIGFYFS 973

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             HPL  Y+ +L K  ++ ++   A+++G     RLA  +V+++ +KTR G ++G + FS+
Sbjct: 974  AHPLSEYQDVLIKKRVQTWKNFAASVKGGATAARLAGTIVARKIRKTRSGKKMGVIQFSD 1033

Query: 1023 PAKEYEANFF 1032
             + +YEA  F
Sbjct: 1034 TSGQYEAVIF 1043


>gi|310816591|ref|YP_003964555.1| DNA polymerase III subunit alpha [Ketogulonicigenium vulgare Y25]
 gi|308755326|gb|ADO43255.1| DNA polymerase III subunit alpha [Ketogulonicigenium vulgare Y25]
          Length = 1163

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 498/1058 (47%), Positives = 676/1058 (63%), Gaps = 49/1058 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VH+ YSLLEGA+   ++     A   PA+A+TDTNNLF ALEFS+KA  
Sbjct: 1    MAD-PKFIHLRVHTEYSLLEGAIHAGDLPKLAKAAGMPAVAVTDTNNLFCALEFSEKASK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GIQPIIGCQ+D+       M  +          IVLL  +  GY  L+ L S  YL D+
Sbjct: 60   SGIQPIIGCQVDLTY-----MKVEAGKRAEDPAPIVLLAQSEVGYANLMALNSCAYL-DK 113

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G    ++  + L     EGLI LTGG  GP+ R         A   L     ++ +RLYV
Sbjct: 114  GGALPQVTTADLAA-HAEGLICLTGGPDGPLGRMIRAGQDNAARLLLERLAAIYPNRLYV 172

Query: 185  NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH         +   E   ++ AY   LPLVATN++ F  E  YEAHD L+ +A   
Sbjct: 173  ELQRHPIEGGLPDAEAQTERPFIEWAYALNLPLVATNDAYFKDEGFYEAHDALICIAEGA 232

Query: 239  V-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                Q+ R ++TP HY K+++EM ++F+DLPEALENTVEIA+RC+F              
Sbjct: 233  YVDQQEPRRKLTPQHYFKSQAEMATLFADLPEALENTVEIAKRCAFKAYKRD-------- 284

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    +E  ELR ++ AGL+ RL    I        Y  RL+FE+N+I +M F GYF
Sbjct: 285  PILPRFADDEVEELRRQSKAGLQARL--DVIPHAAELHVYWDRLEFEMNIIEKMGFPGYF 342

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK   IPVGPGRGSGAGS+ AYALTITD+DP+R+SLLFERFLNP+R+SMPD
Sbjct: 343  LIVADFIKWAKDEGIPVGPGRGSGAGSLVAYALTITDLDPIRYSLLFERFLNPERVSMPD 402

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG +RVAQIITFG+L +KAA+RDVGR LQMPY QVDRL K
Sbjct: 403  FDIDFCMDRREEVIQYVQGKYGRDRVAQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSK 462

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS+   + D+ R RE    +P V RLL+ +Q++EGL R+ASTHAAG+VIGD
Sbjct: 463  MIPVEGVKPVSIAQALKDEPRLREEADREPVVARLLDYAQQVEGLLRNASTHAAGVVIGD 522

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++  + + G  +
Sbjct: 523  RPLDHLVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVSLIRKSGRHL 582

Query: 597  D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                               +  IP DD ++Y L +   T+ +FQ+ES+GM  AL+ M+P 
Sbjct: 583  HEAADGTVLYTPPKGAEDDIGAIPLDDAKSYQLYSDAKTVAVFQVESTGMMDALKRMKPT 642

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG+ +I SIHP ID +L ETQG+I+YQEQVMQI
Sbjct: 643  CIEDIVALVALYRPGPMENIPTYCEVKNGQREITSIHPTIDFILAETQGIIVYQEQVMQI 702

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFA 757
            AQ+++GYSL  AD+LRRAMGKKI EEM K++ +F +GA + + I +  A  +F+LL KFA
Sbjct: 703  AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFTTGAKETHNIDEKKAGEVFDLLEKFA 762

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQI 816
            +YGFNKSHAAAYAV+SYQTAW+K ++ VEF+A  M  ++   +K+  + Q+ R+   +  
Sbjct: 763  NYGFNKSHAAAYAVVSYQTAWLKANHAVEFMAGVMNCDIHLTDKLAVYFQEVRRGLKLGT 822

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            +PP VN     F V D ++ Y+L A+K VG    R ++EA A KPF +L DF  RVD K+
Sbjct: 823  VPPCVNRSLATFDVVDGKLVYALGALKNVGVDAMRLVVEARAGKPFVTLFDFARRVDLKR 882

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            + +R LE +  AGA D    +R ++L+SLD +  Y+  V + R++   ++F  E G    
Sbjct: 883  VGKRPLEMMARAGAFDVLDSNRRRVLESLDALVAYSVAVHEQRSSNQVSLFG-EGGDDLP 941

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN--N 994
            +  L       ++ R   E + +GFY SGHPLD + P LR+ G+    E     +     
Sbjct: 942  EPRLPNVPDWLAAERLGEEFKAIGFYLSGHPLDDHMPGLRRKGVLTLSEVEGKAQNGAFL 1001

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             R+A +V  +Q++K+ +G+R  +   S+P+ +YE   F
Sbjct: 1002 ARMAGVVSGRQERKSARGNRFAFAQLSDPSGQYEVTIF 1039


>gi|312147881|gb|ADQ30540.1| DNA polymerase III subunit alpha [Borrelia burgdorferi JD1]
          Length = 1161

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1036 (37%), Positives = 604/1036 (58%), Gaps = 23/1036 (2%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A 
Sbjct: 14   GMSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AGI+PIIG +  +                     ++LL     GY+ L++L S  YL +
Sbjct: 74   KAGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y
Sbjct: 131  GFYYRPRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQRH   D+     ++V+ +    +PL A N+S +++ ED  A D+++ +      S 
Sbjct: 190  LELQRHGIKDQDIVNERLVKYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSD 249

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300
            ++R ++ T + Y+K++ EM  +F+DLPEALENTV I  +   F +    PILP +     
Sbjct: 250  ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVE 309

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             +        L +  + GL+                 + R  +EL+VI  M F GYFLIV
Sbjct: 310  FN---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGP--KVSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRNVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I++    +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F   +           + F   + S     E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|312114721|ref|YP_004012317.1| DNA polymerase III subunit alpha [Rhodomicrobium vannielii ATCC
            17100]
 gi|311219850|gb|ADP71218.1| DNA polymerase III, alpha subunit [Rhodomicrobium vannielii ATCC
            17100]
          Length = 1151

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 536/1037 (51%), Positives = 710/1037 (68%), Gaps = 12/1037 (1%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F+HL VHS+YSLLEGAL +  ++   AAD QPA+AITD NNLF ALEFS+    
Sbjct: 1    MTK-PGFIHLHVHSAYSLLEGALPVKALIKAAAADGQPALAITDRNNLFGALEFSEYLSG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             GIQPIIGC L +        T + G+ P     +IVLL   AEGY  L+ L SR +L  
Sbjct: 60   EGIQPIIGCALTLAFPAPADETPRPGQRPDAHSGTIVLLAKDAEGYGNLMRLSSRAFLDS 119

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                +  + + +L E    GLI L+GG  GP DRAF   ++ +AE RL T  + FG+R Y
Sbjct: 120  GDGSNPHVEVEFLVE-HAGGLIALSGGPDGPADRAFAAGNAAIAEARLATLAEAFGNRFY 178

Query: 184  VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            V +QRH    +R  E Q+++ AY + +PLVATN + F     +EAHD L+ +A    V++
Sbjct: 179  VEIQRHGLARERAVEPQLLRWAYDNGVPLVATNEAYFPKRAVFEAHDALLCIAEGRYVAE 238

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             DR R++PDH+LK +++MV +F+DLPEA+ NT+EIA+RC+F  +   PI         +D
Sbjct: 239  DDRRRLSPDHWLKPQADMVKLFADLPEAVANTIEIAQRCAFRPRPRKPI-LPQFVAGSED 297

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIA-KGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              + E  ELR +A+AGLE RLA            +Y +RL+FEL+VI RMKF GYFLIV+
Sbjct: 298  THEAEAAELRRQAIAGLEHRLATIPAHFHAASKDEYFKRLEFELDVITRMKFPGYFLIVS 357

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK   IPVGPGRGSGAGSV A++LTITD+DP+RF LLFERFLNP+R+SMPDFDID
Sbjct: 358  DFIKWAKAQGIPVGPGRGSGAGSVVAWSLTITDLDPIRFGLLFERFLNPERVSMPDFDID 417

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRRDEVI+YV+ KYG  RVAQIIT+G LQA+A LRDVGR LQMPY QVDRLCKL+PN
Sbjct: 418  FCQDRRDEVIQYVRAKYGSNRVAQIITYGKLQARAVLRDVGRVLQMPYGQVDRLCKLVPN 477

Query: 482  DPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA+PV+  +AI  + + +EAR  +  V +LL+ +QKLEGLYRHASTHAAG+VIGDR L 
Sbjct: 478  NPANPVTLAEAIEGEPQLQEARDREEIVAQLLDTAQKLEGLYRHASTHAAGVVIGDRDLV 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVP+YRD +SD+ VTQFNMKW+E+AGL+KFDFLGLKTLT+LQK+   L + G  +DL  
Sbjct: 538  ELVPLYRDPKSDMLVTQFNMKWVEQAGLVKFDFLGLKTLTVLQKACALLEKAGRPIDLGH 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY +L    T G+FQLES+GMR+AL  ++PD   DIIA+V+LYRPGP+DNI  
Sbjct: 598  LPLDDRPTYEMLAKGDTGGVFQLESTGMREALRKLKPDRFGDIIAMVALYRPGPMDNIET 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y NRK+G E    +HPL  P+L+ET GVIIYQEQVMQ+AQ+LSGYSL EAD+LRRAMGKK
Sbjct: 658  YVNRKHGIEVPDYLHPLAKPILEETYGVIIYQEQVMQLAQVLSGYSLGEADLLRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            IK EMD Q  RF+ GA +  I +  A  IFEL+AKFA YGFNKSHAAAYA+I+YQTA++K
Sbjct: 718  IKAEMDAQGARFVKGALEKDIPEARARYIFELVAKFAGYGFNKSHAAAYALIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSL 839
             ++  EF+AASMTL+M N +K+  F ++A++  + I+PPSVN   V+F+   DN I Y+L
Sbjct: 778  ANHAQEFIAASMTLDMANTDKLYAFTREAKRNGLAILPPSVNKSAVEFEPEGDNAIRYAL 837

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AA+K +G   A HI+EA  DKP+  L DF  R++ K LN+R +E+L  AGA +    +R 
Sbjct: 838  AALKNMGHAAAAHIVEARGDKPYRDLADFMLRINPKALNKRGIETLNAAGAFEDMETNRA 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRFENEQRV 958
            ++ ++LD + ++     ++R    E++F     G+ + ++ L      +     ENE   
Sbjct: 898  KVAKNLDRLVEFGSKAAEDRARGQEDMFGGGIAGSPAPRLDLADAPEWSLVETLENELGA 957

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRGN-NIRLAAMVVSKQQKKTRKGSRI 1015
             GFY SGHPLD +   L +M +  + +  A     G    RLAA V  +Q +K + G+R 
Sbjct: 958  AGFYLSGHPLDDFTDQLARMNVLKWSDFSARVQAHGRAESRLAATVTYRQDRKAKSGNRF 1017

Query: 1016 GWVTFSEPAKEYEANFF 1032
             +  FS+P  ++EA  F
Sbjct: 1018 AFAGFSDPTGQFEAVIF 1034


>gi|224533626|ref|ZP_03674215.1| DNA polymerase III subunit alpha [Borrelia burgdorferi CA-11.2a]
 gi|224513299|gb|EEF83661.1| DNA polymerase III subunit alpha [Borrelia burgdorferi CA-11.2a]
          Length = 1161

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1036 (37%), Positives = 603/1036 (58%), Gaps = 23/1036 (2%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A 
Sbjct: 14   GMSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AGI+PIIG +  +                     ++LL     GY+ L++L S  YL +
Sbjct: 74   KAGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y
Sbjct: 131  GFYYRPRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQRH   D+     ++V  +    +PL A N+S +++ ED  A D+++ +      S 
Sbjct: 190  LELQRHGIKDQDIVNERLVNYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSD 249

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300
            ++R ++ T + Y+K++ EM  +F+DLPEALENTV I  +   F +    PILP +     
Sbjct: 250  ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVE 309

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             +        L +  + GL+                 + R  +EL+VI  M F GYFLIV
Sbjct: 310  FN---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGP--KVSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRNVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I++    +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F   +           + F   + S     E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQAFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|218249957|ref|YP_002375087.1| DNA polymerase III subunit alpha [Borrelia burgdorferi ZS7]
 gi|226321885|ref|ZP_03797411.1| DNA polymerase III subunit alpha [Borrelia burgdorferi Bol26]
 gi|218165145|gb|ACK75206.1| DNA polymerase III subunit alpha [Borrelia burgdorferi ZS7]
 gi|226233074|gb|EEH31827.1| DNA polymerase III subunit alpha [Borrelia burgdorferi Bol26]
          Length = 1161

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1036 (37%), Positives = 603/1036 (58%), Gaps = 23/1036 (2%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A 
Sbjct: 14   GMSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AGI+PIIG +  +                     ++LL     GY+ L++L S  YL +
Sbjct: 74   KAGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y
Sbjct: 131  GFYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQRH   D+     ++V  +    +PL A N+S +++ ED  A D+++ +      S 
Sbjct: 190  LELQRHGIKDQDIVNERLVNYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSD 249

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300
            ++R ++ T + Y+K++ EM  +F+DLPEALENTV I  +   F +    PILP +     
Sbjct: 250  ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVE 309

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             +        L +  + GL+                 + R  +EL+VI  M F GYFLIV
Sbjct: 310  FN---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGP--KVSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRNVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I++    +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F   +           + F   + S     E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|221218188|ref|ZP_03589654.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 72a]
 gi|225549589|ref|ZP_03770555.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 118a]
 gi|221192136|gb|EEE18357.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 72a]
 gi|225369866|gb|EEG99313.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 118a]
          Length = 1161

 Score =  777 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1036 (37%), Positives = 605/1036 (58%), Gaps = 23/1036 (2%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A 
Sbjct: 14   GMSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AGI+PIIG +  +                     ++LL     GY+ L++L S  YL +
Sbjct: 74   KAGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y
Sbjct: 131  GFYYRPRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQRH   D+     ++V+ +    +PL A N+S +++ ED  A D+++ +      S 
Sbjct: 190  LELQRHGIKDQDIVNERLVKYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSD 249

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300
            ++R ++ T + Y+K++ EM  +F+DLPEALENTV I  +   F +    PILP +     
Sbjct: 250  ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVE 309

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             +        L +  + GL+                 + R  +EL+VI  M F GYFLIV
Sbjct: 310  FN---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGP--KVSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRNVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I++    +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD++ +     + N+     ++F   +           + F   + S     E+ 
Sbjct: 898  TLFENLDHLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|87124235|ref|ZP_01080084.1| DNA polymerase III, alpha subunit [Synechococcus sp. RS9917]
 gi|86167807|gb|EAQ69065.1| DNA polymerase III, alpha subunit [Synechococcus sp. RS9917]
          Length = 1173

 Score =  777 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1051 (36%), Positives = 583/1051 (55%), Gaps = 35/1051 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++      PA+A+TD   ++ A+E  +   AAGI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPQMVERCKELGMPALALTDHGVMYGAIELLKLCKAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          +          +V+L   A GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVINGSIEDPQQK----KERRYHLVVLAKNATGYRNLVKLTSLSHLRGMRGKGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L++  +EGLI+ T    G I +A       VA      ++++FGD  Y+ 
Sbjct: 118  FSRACIDKHLLKQY-SEGLIIATACLGGEIPQAILRGRPDVARDVARWYQEVFGDDFYLE 176

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V++A    + L+ATN++ +L+  D EAHD L+ V    ++S + 
Sbjct: 177  IQDHGSPEDRIVNVEIVRIAKELGIGLIATNDAHYLTRHDVEAHDALLCVLTGKLISDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R R T   Y+++  EM  +F+D   PE ++  +      +  ++ +  +    + +    
Sbjct: 237  RLRYTGTEYIRSEEEMGRLFADHLAPEVVQEAITTTALVADKVEDYDILGRYQMPRFPIP 296

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                  + LR  +  GL  RL  GA         Y +RL +EL ++ +M F  YFL+V D
Sbjct: 297  EGHTPVSYLREVSECGLRERLELGADE--VIDPTYGERLTYELGIMEQMGFPTYFLVVWD 354

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I++A+   IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 355  YIRFARDQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDIDTDF 414

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KLIP  
Sbjct: 415  CIERRGEVIDYVTRRYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 474

Query: 483  PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
               P  L+A+    + +  FR+    DP V R ++++ ++EG  +    HAAG+VI   P
Sbjct: 475  RGKPAKLKAMIGEESPNPEFRDKYDKDPVVKRWVDMAMRIEGTNKTFGVHAAGVVIAADP 534

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVD 597
            L +LVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +    G ++D
Sbjct: 535  LDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVETSLGERID 593

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               +P  D +T+ LL      GIFQLES+GMRQ +  ++P  +EDI ++++LYRPGP+D 
Sbjct: 594  PDKLPAKDPDTFALLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILALYRPGPLDA 653

Query: 658  --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  + NRK+G+E I   H  + P+L+ET G+++YQEQ+M+IAQ L+GYSL EAD+LRR
Sbjct: 654  GLIPKFINRKHGREAIDFAHQSLQPILQETYGIMVYQEQIMKIAQDLAGYSLGEADLLRR 713

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK   EM K +  F+ GAS+ G+   +A  +F+ +  FA+Y FNKSH+ AY  ++YQ
Sbjct: 714  AMGKKKVAEMQKHRSIFVKGASERGVDDKVADELFDQMVLFAEYCFNKSHSTAYGAVTYQ 773

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYPV ++AA +T+     +K++++  +     I++MPP VN    DF    +RI
Sbjct: 774  TAYLKAHYPVAYMAALLTVNAGASDKVQRYIANCNAMGIEVMPPDVNASGTDFTPTGDRI 833

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L+A++ +G    R ++ +  AD PF SL D C R+ S  LNRR LESL+  GA+D  
Sbjct: 834  LFGLSAVRNLGDGAIRQLIASREADGPFQSLADLCDRLPSSVLNRRSLESLIHCGAMDAL 893

Query: 895  GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----------AHEKGTFSDKITLEK 942
                +R QL+  LD +  +A    K+R +   N+F                 S       
Sbjct: 894  APEANRAQLIADLDLLLDWASSRAKDRDSGQGNLFDLMASAADSAGSGPADLSLAPKAAP 953

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                + S +   E+ ++GFY S HPL   KP  R +   G            +   AMV 
Sbjct: 954  VPDYHPSEKLRLEKELVGFYLSDHPLKQLKPPARLLAPIGLASLQEQADKAKVSAIAMVS 1013

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +Q  TRKG R+  +   +     EA  FP
Sbjct: 1014 ELRQVTTRKGDRMAVLQLEDLTGSCEAVVFP 1044


>gi|225551916|ref|ZP_03772856.1| DNA polymerase III subunit alpha [Borrelia sp. SV1]
 gi|225370914|gb|EEH00344.1| DNA polymerase III subunit alpha [Borrelia sp. SV1]
          Length = 1161

 Score =  777 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1036 (37%), Positives = 604/1036 (58%), Gaps = 23/1036 (2%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A 
Sbjct: 14   GMSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AGI+PIIG +  +                     ++LL     GY+ L++L S  YL +
Sbjct: 74   KAGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y
Sbjct: 131  GFYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQRH   D+     ++V+ +    +PL A N+S +++ ED  A D+++ +      S 
Sbjct: 190  LELQRHGIKDQDIVNERLVKYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSD 249

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300
            ++R ++ T + Y+K++ EM  +F+DLPEALENTV I  +   F +    PILP +     
Sbjct: 250  ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVE 309

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             +        L +  + GL+                 + R  +EL+VI  M F GYFLIV
Sbjct: 310  FN---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGP--KVSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I++    +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F   +           + F   + S     E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIRQSFNYQAFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|49475735|ref|YP_033776.1| DNA polymerase III subunit alpha [Bartonella henselae str. Houston-1]
 gi|49238542|emb|CAF27778.1| DNA polymerase III alpha subunit [Bartonella henselae str. Houston-1]
          Length = 1162

 Score =  777 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 585/1030 (56%), Positives = 745/1030 (72%), Gaps = 8/1030 (0%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+VHS+YSLLEGAL +  I+    +D  PA+AITDTNNLF ALEFSQ   + GIQ
Sbjct: 16   PHFIHLRVHSAYSLLEGALKIPQIIQHAISDHTPAVAITDTNNLFGALEFSQYCFSYGIQ 75

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            PIIGCQL ID  D        K   P+   SIVLL ++  GY  L+ LVSR YL      
Sbjct: 76   PIIGCQLTIDFGDGNDNPRLVKWRHPSDFCSIVLLAASEIGYAHLVRLVSRAYLDKCDTD 135

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   WL     EG+I+LTGG  GPI+ +      + A +RL+  KK+F DRLYV LQ
Sbjct: 136  PPHIKADWLLS-HNEGIIVLTGGRGGPINFSLAEERKERAIERLIYLKKIFDDRLYVELQ 194

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            RH  +D+  E+ +++LAY +E+PLVATN + FL+ E YEAHD LMAVA   +VS  DR R
Sbjct: 195  RHGSFDQKVEAALIELAYAYEIPLVATNEAFFLNREGYEAHDALMAVAEGQIVSNPDRKR 254

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQK 305
            VTPDHYLK++ EMV++FSDLPEALEN+VEIA RC        PILPRFIE+  D     +
Sbjct: 255  VTPDHYLKSQEEMVALFSDLPEALENSVEIALRCHTATPTRKPILPRFIEQSVDLNFTLE 314

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E+ EL N+A AGL++RL    +A+GY   DY QRLD+E++VI RM+FSGYFLIV+DFI+
Sbjct: 315  AEDRELLNQAKAGLKMRLKTIGLAEGYTITDYEQRLDYEISVITRMQFSGYFLIVSDFIK 374

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK ++IPVGPGRGSGAGS+ AYAL ITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQ+
Sbjct: 375  WAKVHDIPVGPGRGSGAGSLVAYALMITDVDPLRFSLLFERFLNPDRVSMPDFDIDFCQE 434

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI YVQ KYG ++VAQIITFG LQA+A LRDVGR L++PY QV+ L KL+P  P  
Sbjct: 435  RREEVIHYVQKKYGRDQVAQIITFGKLQARAVLRDVGRVLEVPYRQVEYLTKLVPAAPGS 494

Query: 486  PVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             V    AI D+ +F E +  DP++ R L+I+ +LEGLYRHASTHAAGIVIGDRPLS+L+P
Sbjct: 495  QVELADAIKDEPKFEEEKKKDPAIGRTLDIALQLEGLYRHASTHAAGIVIGDRPLSELIP 554

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            MYRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++DF+A++G+K++LS IP +
Sbjct: 555  MYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKMAVDFVARKGIKINLSNIPLN 614

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY ++    T+GIFQ+ESSGMR+AL GM+PD IEDIIALV+LYRPGP++NI +YN R
Sbjct: 615  DETTYAMMARGETVGIFQVESSGMRKALIGMKPDRIEDIIALVALYRPGPMENIPIYNAR 674

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+G+E+I SIHP ID ++KETQGVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKKI  E
Sbjct: 675  KHGEEEIASIHPKIDHLIKETQGVIVYQEQVMQIAQVLAGYSLGEADLLRRAMGKKIHTE 734

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+ RF++GA   G+ K  A  IF+LLAKFADYGFNKSHAAAYA+ISYQTA+MK H+P
Sbjct: 735  MQKQRTRFVNGAVAGGVDKDQADIIFDLLAKFADYGFNKSHAAAYAIISYQTAYMKAHHP 794

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLAASMT +M N EK+  F ++A +  I+++ P V T    F+VGDN IYYSLAAIKG
Sbjct: 795  VEFLAASMTYDMMNTEKLNDFRREALRLGIKVIAPCVQTSHRVFEVGDNCIYYSLAAIKG 854

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG     HI+    +K F  LEDFC R+D + +N+R +ESLV AGA DCF  +R  LL S
Sbjct: 855  VGEAVVDHIVACRGNKVFKDLEDFCERIDPRIVNKRAMESLVCAGAFDCFNIAREVLLAS 914

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L  +   A  +  + ++   +IF        + + L + S  +   +   E + +GFYFS
Sbjct: 915  LGTLHARALRILDDNSSGQTDIFGI-TSVLKEPLILSQASPWSLDEKLHREFQAIGFYFS 973

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             HPLD Y+ IL K  I+ +      ++      RLA  VV+KQ +KT+ G ++G V FS+
Sbjct: 974  AHPLDEYQAILVKKRIQNWVNFANAVKAGATAARLAGTVVAKQVRKTKSGKKMGIVHFSD 1033

Query: 1023 PAKEYEANFF 1032
             + +YEA  F
Sbjct: 1034 TSGQYEAVLF 1043


>gi|195941713|ref|ZP_03087095.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 80a]
          Length = 1161

 Score =  777 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1036 (37%), Positives = 604/1036 (58%), Gaps = 23/1036 (2%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A 
Sbjct: 14   GMSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AGI+PIIG +  +                     ++LL     GY+ L++L S  YL +
Sbjct: 74   KAGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y
Sbjct: 131  GFYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQRH   D+     ++V+ +    +PL A N+S +++ ED  A D+++ +      S 
Sbjct: 190  LELQRHGIKDQDIVNERLVEYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSD 249

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300
            ++R ++ T + Y+K++ EM  +F+DLPEALENTV I  +   F +    PILP +     
Sbjct: 250  ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVE 309

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             +        L +  + GL+                 + R  +EL+VI  M F GYFLIV
Sbjct: 310  FN---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGP--KVSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPIYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I++    +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F   +           + F   + S     E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|86749719|ref|YP_486215.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris HaA2]
 gi|86572747|gb|ABD07304.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris HaA2]
          Length = 1151

 Score =  777 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 521/1036 (50%), Positives = 706/1036 (68%), Gaps = 15/1036 (1%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++  FVHL VHS+YSLL+G++ +  + D   AD QPA+A+TDT+N+F ALEFS K   
Sbjct: 1    MSQA-GFVHLHVHSAYSLLKGSMKIARLADLAKADHQPALALTDTDNMFGALEFSDKLAG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GIQPI+G +L ID  D    +       P    +VLL +   GY+ L+ L SR +L   
Sbjct: 60   SGIQPIVGLELGIDFGDQDPTSRNAALAAPA--RVVLLATRERGYRSLMRLNSRAFLETP 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              Q   I   WL +  T+ +I LTGG  GPI  A       +   R     + FGDRLYV
Sbjct: 118  VNQPPHIKFDWL-DGETDDVIALTGGPEGPISLAMLT-DPALGRLRCERLAQAFGDRLYV 175

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH    +R  E+ ++ +AY   LPLVATN   F + +D+EAHD L+ +A   ++++ 
Sbjct: 176  ELQRHNTDVERRAEAGLIDIAYDMGLPLVATNEPHFATADDFEAHDALLCIASGKLIAET 235

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP----ILPRFIEKE 299
            DR ++TPDH  K R+EM  +F+DLPEAL +TVEIA+RC++      P            +
Sbjct: 236  DRVQLTPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGASVND 295

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             ++    E  ELR +A  GL  R+    +++G   +DY++RL FEL+VI RMK++GYFLI
Sbjct: 296  AEEAAAAEAAELRRQAEQGLADRMRVHGLSQGMTEEDYQKRLAFELDVITRMKYAGYFLI 355

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V+DFI+WAK + IPVGPGRGSGAGS+ AY+LTITD+DP+RF LLFERFLNP+R+SMPDFD
Sbjct: 356  VSDFIKWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFD 415

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQDRR EVI YVQ++YG ++VAQIITFG+LQA+  LRDVGR LQMPY QVD+L KL+
Sbjct: 416  IDFCQDRRGEVIEYVQHRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLV 475

Query: 480  PNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P +PA PVS  QAI  + + +  R  DP V R  +I+QKLEGL RHASTHAAGIVIGDRP
Sbjct: 476  PQNPAAPVSLKQAIESEPKLQAFRDEDPVVARAFDIAQKLEGLTRHASTHAAGIVIGDRP 535

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            LS LVPMYRD +SD+PVTQFNMKW+E AGL+KFDFLGLKTLT+L  ++  L QR + +DL
Sbjct: 536  LSDLVPMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRDIHIDL 595

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +  +D  +Y +L     +G+FQ+ES GMR+AL  M+PD  EDIIALV+LYRPGP+ NI
Sbjct: 596  ATLGIEDPVSYQMLARGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANI 655

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  RK+G E+   +HP+++P+LKET GVIIYQEQVMQIAQ+++GYSL EAD+LRRAMG
Sbjct: 656  PTYCARKHGDEESEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMG 715

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KKI+ EM+KQ+  F+ GA+KNG+ K  A  IF+LLAKFADYGFNKSHAAAYA++SY TA+
Sbjct: 716  KKIRAEMEKQRAIFVEGATKNGVPKDSADTIFDLLAKFADYGFNKSHAAAYALVSYHTAY 775

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            MK HYPVEF+AASMTL+++N +K+ +F  +A++  I++  PSVN     F+VG N IYY+
Sbjct: 776  MKAHYPVEFIAASMTLDLNNTDKLSEFRAEAQRLGIKVEAPSVNRSGPTFEVGANTIYYA 835

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            LA +KGVG    + I+EA  DKPF SL DF +RV+ + +N+RV+ESL  AGA DC   +R
Sbjct: 836  LAGLKGVGLQAVQMIVEARGDKPFASLADFAARVNPRAINKRVIESLAAAGAFDCLDSNR 895

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             ++    D I    Q   +  T+   ++F       + ++ L +      + R   E   
Sbjct: 896  ARVFAGADAIIAACQRSHEAATSGQNDMFGGLAD--APQVVLPQIEPWLPAERLRREYDA 953

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKTRKGSRIG 1016
            +GF+ SGHPLD Y   L+++ ++ + E   A   G    ++AA VVS+ +++T+ G+++G
Sbjct: 954  IGFFLSGHPLDDYATALKRLRVQSWAEFCKAVKSGATAGKVAATVVSRMERRTKTGNKMG 1013

Query: 1017 WVTFSEPAKEYEANFF 1032
             +  S+P   +EA  F
Sbjct: 1014 IMGLSDPTGHFEAVLF 1029


>gi|187776689|ref|ZP_02993162.1| hypothetical protein CLOSPO_00204 [Clostridium sporogenes ATCC 15579]
 gi|187775348|gb|EDU39150.1| hypothetical protein CLOSPO_00204 [Clostridium sporogenes ATCC 15579]
          Length = 1185

 Score =  777 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1071 (34%), Positives = 593/1071 (55%), Gaps = 55/1071 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            EK P +V L  H+ YSLL+ +  +++++ +       +IAITD   ++  ++F ++A   
Sbjct: 8    EKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKEAIKQ 67

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PIIGC++ +  +         +        +VLLV    GY+ L+E+VS+   ++  
Sbjct: 68   GIKPIIGCEIYVAAKSMYIKQQDKEN---ETHHLVLLVKNEIGYKNLMEIVSKAS-VEGF 123

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                R+   +L+E  +EGLI L+    G +       + + ++K  L +K +F +  Y+ 
Sbjct: 124  YYKPRVDHEFLKE-HSEGLIALSACLGGEVQSNILKGNLEKSKKAALIYKDIFKEGFYLE 182

Query: 186  LQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ H   ++      +VQ++   ++PLVATN+  ++ +EDY++HD+L+ +     V +++
Sbjct: 183  LQYHGMEEQLKVNETLVQMSKELDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTVEEEN 242

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R  +   YLK+  EM   FS +PEALENTV+I+ +C+F    H   LP+F  +E  D 
Sbjct: 243  RMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEQCNFDYNFHESKLPKFPLEEGIDP 302

Query: 304  QKEEENELRNKAVAG------------LEVRLAQGAIAKGYHAQDY---RQRLDFELNVI 348
                   LR     G             +       +A G   ++     +RL++EL++I
Sbjct: 303  Y----EYLREICFKGLFSRYEILKDFMNKPFSMDEILAYGAENKEAFDLIERLNYELSII 358

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M +  YFLIV DFI++A +  I  GPGRGS AGS+ AY L IT IDP++++L+FERFL
Sbjct: 359  KQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFL 418

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NPDR+SMPD D DFC +RR EVI YV  KYG   V+QIITFG++ A+A +RDVGRA+  P
Sbjct: 419  NPDRISMPDIDSDFCYERRGEVIDYVVEKYGKANVSQIITFGTMAARACIRDVGRAMNYP 478

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            Y++VDR+ K+IP      +  +A+  +   +EA   +  V  L+++++ LEGL RH STH
Sbjct: 479  YAEVDRIAKMIPTVLNITI-NKALELNPELKEAYDNEERVKELIDVARALEGLPRHTSTH 537

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAG+VI  +PL   VP+ ++   +  VTQF M  +E+ GL+K DFLGL+TLT+++ ++  
Sbjct: 538  AAGVVIASQPLVNYVPLQKN--EESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVRI 595

Query: 589  LAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            + +   + +DL  I F+D E Y ++    T+G+FQLES+GM   ++ ++PD +EDIIA +
Sbjct: 596  IKENKGIDIDLDTIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGI 655

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            SLYRPGP+  I  Y   KN    I      ++P+L  T   I+YQEQVMQI + L+GYS+
Sbjct: 656  SLYRPGPMAEIPRYIANKNNPLNIEYATEKLEPILSVTYNCIVYQEQVMQIVRDLAGYSM 715

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADY 759
              +D++RRAM KK  + M+ +++ FI         G   NGI + +A N+F+ +  FA Y
Sbjct: 716  GRSDLVRRAMSKKKHDVMELERKNFIYGNKEEGVKGCINNGIDEKVANNLFDSMMDFASY 775

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSHAAAYAV+ +QTA++  +YP EF+AA +     + +K+  +   A    I+I+ P
Sbjct: 776  AFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDSDKVSFYVNFAETLGIEIVAP 835

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLN 878
            ++N    +F V DNRI + L A+K VG     +I+        F  L DF ++VD+  +N
Sbjct: 836  NINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKGKFIDLSDFFNKVDTSIIN 895

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-- 936
            +R++ESL+ AGA DC    R ++L   + I    Q  ++N      N+F           
Sbjct: 896  KRLVESLIKAGAFDCLNVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDNKESSM 955

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT------- 989
             I        +     + E+ + G YFSGHPL+ Y+  L+        + ++        
Sbjct: 956  DIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKVQISHHISDIISKESLEGNM 1015

Query: 990  -------IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                     G+ + +  M+    +K TR    + ++   +     E   FP
Sbjct: 1016 VDAINSIKDGDKVIVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066


>gi|220918685|ref|YP_002493989.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans
            2CP-1]
 gi|219956539|gb|ACL66923.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans
            2CP-1]
          Length = 1210

 Score =  777 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1083 (36%), Positives = 608/1083 (56%), Gaps = 70/1083 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL +H+ YSLL+GA+ + ++L  + A    ++A+TD  NLF A++F +KA  AG++
Sbjct: 2    PDFVHLHLHTLYSLLDGAIRIKDLLKTVKAKGMSSVAVTDHGNLFGAVDFYKKAKEAGVK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G +  +          +          ++LL   AEG+  L  L S+ +  +     
Sbjct: 62   PILGMEAYVAGDKG-----RTDRSERIGRHLILLAKNAEGWANLRYLSSKAFT-EGFYYD 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
             RI    L++  ++GL+ LT   +G + R         A +    ++ +F     ++ +Q
Sbjct: 116  PRIDKQLLRD-HSKGLVGLTACLAGEVPRLARQGDMDGARRVAREYRDIFEPGSFFLEVQ 174

Query: 188  RHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   ++    +++ QL     +PLV T ++ ++S ++ +AH+VLM +A +       R 
Sbjct: 175  SNGMREQLDVNAKLAQLGRDEGIPLVGTADAHYVSRQEAKAHEVLMCIASNKTFQDPKRL 234

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  T   ++    EM +   D  EAL+NT+ IA  C+  L +    LP F   E      
Sbjct: 235  RHDTDGLFVAGPDEMAAALPDFREALDNTLRIAEMCNVELPLGKTFLPSFTLPEGM---- 290

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E++ +   A  GL+ R  +      +    YRQRL+ EL VI +M F GYFLIV DFI 
Sbjct: 291  SEDDYIDKLAREGLDRRFREIDGKYPHDRDVYRQRLEMELGVIKKMGFPGYFLIVQDFIN 350

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK+++IPVGPGRGSGAGS+ A++L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DFCQ+
Sbjct: 351  WAKEHHIPVGPGRGSGAGSIVAWSLRITDLDPLRWHLLFERFLNPERVSMPDFDVDFCQN 410

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI+YV+ KYG + V QIITFGSL+A++ +RDV R + +P+++ DR+ KL+P+    
Sbjct: 411  RRDEVIQYVRGKYGQDNVGQIITFGSLKARSVIRDVVRVMGLPFAEGDRIAKLVPDPVQG 470

Query: 486  PVSL--------QAIADDSRFREARLADPSVDRLLEI---------------SQKLEGLY 522
                          +  + R +E       + + ++                +  LEGL 
Sbjct: 471  KTPPLKELVFGSDKMPAEPRLKELHDKPAVISQWVDDKGVQNKVTTKDLLDIAMSLEGLN 530

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R A  HAAG+VI D+PL + VP Y+D +S++ V+QF  + +E AGL+KFDFLGLKTLT++
Sbjct: 531  RQAGLHAAGVVIADKPLWEYVPAYKDDKSEMLVSQFAKEEVEAAGLVKFDFLGLKTLTVI 590

Query: 583  QKSLDFLAQRGVKVDLS---LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
              +L  + +   ++       IP DD   Y L++   T G+FQ+ESSG  + +  M+P  
Sbjct: 591  DDALRMVKRNHPEMKDFAASDIPIDDPAVYELISRGDTGGVFQMESSGFTEMVVKMKPSR 650

Query: 640  IEDIIALVSLYRPGPID--------NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
             ED+IA  +LYRPGP+D         + VY +RK+G+EK+   HP ++ +L+ T GVI+Y
Sbjct: 651  FEDVIAAGALYRPGPLDQKLEDGRTMVDVYIDRKHGREKVQYPHPSLEKVLEPTYGVIVY 710

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVMQI+Q+L+GYSL +AD+LRRAMGKK  E M K++  F++GA  NG+ + +A  IF+
Sbjct: 711  QEQVMQISQVLAGYSLGQADLLRRAMGKKKAEVMAKERVGFLAGAVANGVDEKVAGGIFD 770

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            L+ KFA YGFNKSH+AAY +++ QTAW+K HYPVEF+AA ++ E  N +K+     +AR 
Sbjct: 771  LMEKFAAYGFNKSHSAAYGLLTVQTAWLKAHYPVEFMAALISSEASNTDKVVLHISEARA 830

Query: 812  FNIQIMPPSVNTPCVDFKV----------GDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
              ++++PP VN     F               RI + L A++GVG +  + I+EA A  P
Sbjct: 831  SQLEVLPPDVNESDAAFGAFPPGPESPKGSRGRIRFGLGAVRGVGESAVQAIVEARASGP 890

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F SL D   RVDSKK+N++VLE+LV +GALD  G  R QL   +D         + +R +
Sbjct: 891  FKSLFDLAGRVDSKKINKKVLEALVKSGALDFEGVPRWQLYFGIDAAISAGASAQADRAS 950

Query: 922  KHENIFAHEK-----------GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
               ++F                   D +           VR   E+  LGFY +GHPL  
Sbjct: 951  GQASLFGALAASAATEAKPRYPRPGDAVGEVTVEEWPERVRLAFEKEALGFYLTGHPLMG 1010

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEA 1029
            Y+  +R+              G+ + +  +V S +++  + KG+R G++T  +     E 
Sbjct: 1011 YEREVRRYASSTCAAVAQKRHGDKVTVVGVVASLRERMNKEKGTRFGFLTLEDLTGTTEV 1070

Query: 1030 NFF 1032
              +
Sbjct: 1071 ICW 1073


>gi|146308059|ref|YP_001188524.1| DNA polymerase III subunit alpha [Pseudomonas mendocina ymp]
 gi|145576260|gb|ABP85792.1| DNA polymerase III, alpha subunit [Pseudomonas mendocina ymp]
          Length = 1176

 Score =  777 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1068 (39%), Positives = 617/1068 (57%), Gaps = 60/1068 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +  +FVHL++H+ YSL++G + +  ++  +A    PA+A+TD +N+ S ++F + A  
Sbjct: 1    MTQ--AFVHLRLHTEYSLVDGLVRVKPLIKAVAGAGMPAVAVTDMSNMCSLVKFYKTAMG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PI G  + +   +              +  + LL    +GY+ L EL+SR +   Q
Sbjct: 59   AGVKPICGADIWMASAEE----------DGPLTRLTLLAMNPKGYRNLTELISRGWAEGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                V I   W+++   EGLI L+G   G +  A       +AE RL  +  +F DR Y+
Sbjct: 109  SNDLVIIQRDWVKD-AAEGLIALSGAREGEVGLALLAGDEALAETRLREWMAVFPDRFYL 167

Query: 185  NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR  R  D       V LA   E PLVATN+  F+ ++D+EAH+  + +     +   
Sbjct: 168  EVQRTSRVGDEEYLHAAVSLADRVEAPLVATNDVRFIKQDDFEAHETRVCIGEGRTLDDP 227

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +   YLK  +EM  +FSDLPEALENTVEIA+RC+  +Q+    LP F       
Sbjct: 228  RRPRHYSDQQYLKTPAEMWELFSDLPEALENTVEIAKRCNIDVQLGKYFLPDFPTPNGMG 287

Query: 303  IQKEEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            I    ++ LR+ +  GLE RL     +         Q Y  RL+FEL++I +M F GYFL
Sbjct: 288  I----DDYLRHASFEGLEERLQVLLPKDTPDYEAKKQVYVDRLNFELDIIIQMGFPGYFL 343

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFIQWAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDF
Sbjct: 344  IVMDFIQWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDF 403

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV RA    Y   DRL K+
Sbjct: 404  DVDFCMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSYGLADRLSKM 463

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP +    +      ++   RE    D     + ++S KLEG+ R    HA G+VI    
Sbjct: 464  IPFEVGMTLEKAYEMEEP-LREFLKNDEEAQEIWDMSLKLEGIVRGTGKHAGGVVIAPTK 522

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-- 596
            L+   P+  D      VTQF+   +E+AGL+KFDFLGL+TLT+++ +++ + +   +   
Sbjct: 523  LTDFSPIACDEEGGGLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKWAMETIHRIQKRDGA 582

Query: 597  ------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  ++  IP DD +TY +L    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+
Sbjct: 583  ADEDLVNIDFIPLDDKKTYDMLQKAETTAVFQLESRGMKELIKKLKPDCLEDMIALVALF 642

Query: 651  RPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLS 703
            RPGP+ + +   + NRK+G+ ++   HP      ++P+LK T GVI+YQEQVMQIAQ+++
Sbjct: 643  RPGPLQSGMVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGVILYQEQVMQIAQVMA 702

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            GY+L  AD+LRRAMGKK  EEM KQ+  FI G + NGI   +A NIF+L+ KFA YGFNK
Sbjct: 703  GYTLGGADMLRRAMGKKKPEEMAKQRGGFIEGCANNGIDADLAGNIFDLVEKFAGYGFNK 762

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAY ++SYQTAW+K HYP  F+AA ++ +M N +K+    ++ R   ++I PP VN 
Sbjct: 763  SHSAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVILVEECRNMKLRIDPPDVNV 822

Query: 824  PCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRV 881
                F V  D RI Y L A+KGVG      I+E  A+  PF  L DFC+RVD K++N+R 
Sbjct: 823  SEFKFTVNDDGRIVYGLGAVKGVGEGPVEAIVECRAEGGPFKDLFDFCNRVDLKRINKRT 882

Query: 882  LESLVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            LE+L+ +GALD  G                +R  LL S++   + A+   ++  + H ++
Sbjct: 883  LEALIRSGALDRLGPYYQDELKAYQASVDKNRAVLLASMEEAVQSAEQTARSAESGHMDL 942

Query: 927  FAHEKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            F          +     K        R + E+  LG Y SGHP+D Y+  +R+   +   
Sbjct: 943  FGGLFAEPEADVYANHRKARELPIKERLKGEKDTLGIYLSGHPIDEYEGEIRRFARQRIV 1002

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            E           +A M+V+ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1003 ELKPARDTQ--TIAGMIVNLRVMKNKKGDKMGFITLDDRSGRIEASLF 1048


>gi|312149376|gb|ADQ29447.1| DNA polymerase III subunit alpha [Borrelia burgdorferi N40]
          Length = 1161

 Score =  777 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1036 (37%), Positives = 603/1036 (58%), Gaps = 23/1036 (2%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A 
Sbjct: 14   GMSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AGI+PIIG +  +                     ++LL     GY+ L++L S  YL +
Sbjct: 74   KAGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y
Sbjct: 131  GFYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQRH   D+     ++V  +    +PL A N+S +++ ED  A D+++ +      S 
Sbjct: 190  LELQRHGIKDQDIVNERLVNYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSD 249

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300
            ++R ++ T + Y+K++ EM  +F+DLPEALENTV I  +   F +    PILP +     
Sbjct: 250  ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVE 309

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             +        L +  + GL+                 + R  +EL+VI  M F GYFLIV
Sbjct: 310  FN---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGP--KVSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRNVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I++    +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F   +           + F   + S     E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAIDGFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|226321045|ref|ZP_03796588.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 29805]
 gi|226233569|gb|EEH32307.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 29805]
          Length = 1161

 Score =  777 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1036 (37%), Positives = 603/1036 (58%), Gaps = 23/1036 (2%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A 
Sbjct: 14   GMSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AGI+PIIG +  +                     ++LL     GY+ L++L S  YL +
Sbjct: 74   KAGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y
Sbjct: 131  GFYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQRH   D+     ++V  +    +PL A N+S +++ ED  A D+++ +      S 
Sbjct: 190  LELQRHGIKDQDIVNERLVNYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSD 249

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300
            ++R ++ T + Y+K++ EM  +F+DLPEALENTV I  +   F +    PILP +     
Sbjct: 250  ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVE 309

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             +        L +  + GL+                 + R  +EL+VI  M F GYFLIV
Sbjct: 310  FN---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGP--KVSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRNVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I++    +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F   +           + F   + S     E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAIDGFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|288574785|ref|ZP_06393142.1| DNA polymerase III, alpha subunit [Dethiosulfovibrio peptidovorans
            DSM 11002]
 gi|288570526|gb|EFC92083.1| DNA polymerase III, alpha subunit [Dethiosulfovibrio peptidovorans
            DSM 11002]
          Length = 1145

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1040 (36%), Positives = 598/1040 (57%), Gaps = 33/1040 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K  +FVHL VH+ YSLL+GA+    +  +      PA+AI+D   ++  +EF Q    
Sbjct: 1    MTKEKNFVHLHVHTEYSLLDGAIRCKELARRAKEWGMPAVAISDHGVMYGVIEFYQACKD 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIGC++ +  +   +   +          ++LL     GY  L++LVS     D 
Sbjct: 61   EGIKPIIGCEIYVAPEGIEEKRKENPIN-----HLLLLAENDVGYHNLVKLVSIANT-DG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 R+    L    +EG+I  +   +G I +       + A  R   ++ +FG D  +
Sbjct: 115  FYYKPRVDHDLLSRY-SEGIIACSACLAGEIPQLLIAGEDEKALDRANLYRDIFGEDNFF 173

Query: 184  VNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q  H  +       +++++  H  PLVAT +S ++++EDY+ H++L+ V  ++ +  
Sbjct: 174  LEIQYNHIPHQAVVNKGLIEMSRKHGFPLVATTDSHYMNKEDYDWHEILLCVGTNSTLDD 233

Query: 243  KDRPRVTPDHYLKN--RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              R     + +              D+PEALENT++IA RC     +             
Sbjct: 234  PKRMSFETNDFYLRSAEEMWQIFGDDVPEALENTLKIAERCDVSFDLGTREYKLPQFDIP 293

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +   +  E+ L   A  GL+ R     +       +YR+RL++EL+VI +M F GYFLI+
Sbjct: 294  EG--ETLESFLEKSAFDGLKER-----LKGAPLTDEYRRRLEYELSVINQMGFPGYFLII 346

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            AD IQ  K+  IP+GPGRGS AGS+ AYA+ IT++DP+++ L+FERFLNP+R++MPD D 
Sbjct: 347  ADVIQACKERGIPIGPGRGSAAGSLVAYAMKITELDPIKYGLIFERFLNPERVTMPDIDT 406

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D     R+++++YV  KYG E V+QIITFG ++ KAA++DVGRA+ +PY++VDR+ KL+P
Sbjct: 407  DVSDKGREDLLKYVVEKYGVENVSQIITFGRMKTKAAIKDVGRAMGIPYAEVDRVAKLVP 466

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                      AI+     +E R  DP +  LLE + K+EGL RH S HAAG+VI   PL+
Sbjct: 467  --DGVKSIADAISLTPDLKEIRDKDPKMRTLLESAAKIEGLARHCSQHAAGVVITPMPLT 524

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599
             LVP+ +    +  VTQF+M+ +E+ GL+K DFLGL+TL++L+++L+ +        +L+
Sbjct: 525  DLVPVRKIG-ENQVVTQFSMEPVERLGLVKMDFLGLQTLSILEEALENIKTNGKEPPNLN 583

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +P DD  T+ +L    TLG+FQLES+GMR+ L+ M PD  ED+IA+++LYRPGP+++ +
Sbjct: 584  ELPMDDQSTFKMLQAGDTLGVFQLESAGMRRLLKKMLPDSFEDVIAVLALYRPGPLESGM 643

Query: 660  --VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
               Y   K+G+ K   +HP+++ +LKET GVI+YQEQVM+ A  L+GY+L  AD+LRRAM
Sbjct: 644  LDQYVECKHGRAKAHYLHPMLEDVLKETHGVILYQEQVMKCASTLAGYTLGGADLLRRAM 703

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  E M++Q+  F+SGA K G+ K  A  IF+++ KFA YGFNKSH+AAYA+ISYQTA
Sbjct: 704  GKKKVEVMNEQRAIFLSGAEKQGVDKAKADEIFDIIQKFAGYGFNKSHSAAYALISYQTA 763

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIK-KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            ++K HY  EF+AA +T ++ + + +   + ++ R+  I ++PP VN     F   +N I 
Sbjct: 764  YLKAHYDREFMAAYLTSQIGSKKDVMAAYVREVRKSGIPVLPPDVNQSRSAFTAAENVIR 823

Query: 837  YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            + L A+  VG+     I++A  +  PF  L DF  RVD + LN+ V+E+L+ AGA D   
Sbjct: 824  FGLEAVGKVGSGAVEAIIKAREEGGPFKDLWDFLDRVDVRCLNKGVMENLIKAGAFDSIS 883

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R QL++S   +  YA  +++       ++F  ++        + +    +   + E E
Sbjct: 884  PNRRQLMESFPAMMDYA--LKRGCDGDQCSLFGEQEAAV--HPDMVEVEDYDIQEKLEME 939

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR--LAAMVVSKQQKKTRKGS 1013
            +  +G Y SGHP + Y+    +       +     R   +    A M+V   +K T++G 
Sbjct: 940  KSAIGMYISGHPFERYEEKASRYVNCTISDL-ELWRSEKVSPCFAGMLVESVEKYTKRGE 998

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
             +G + F + + E EA  FP
Sbjct: 999  PMGILRFEDCSGEIEAVCFP 1018


>gi|218135117|ref|ZP_03463921.1| hypothetical protein BACPEC_03022 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990502|gb|EEC56513.1| hypothetical protein BACPEC_03022 [Bacteroides pectinophilus ATCC
           43243]
          Length = 1200

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1004 (36%), Positives = 559/1004 (55%), Gaps = 31/1004 (3%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +E   +F HL VH+ YSLL+G   +N I+ +       ++AITD   ++  ++F + A  
Sbjct: 1   MEIRMAFTHLHVHTEYSLLDGLSKINEIVSQAKKLGMDSLAITDHGVMYGVIDFYRAALK 60

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            GI+PIIGC++ +          +          +VLL     GY  L+++VS+ + ++ 
Sbjct: 61  EGIKPIIGCEVYVAPGSRFDK--EAGAGDDRYYHLVLLAENDTGYHNLMKIVSKGF-VEG 117

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                R+    L E   EG+I L+   +G + R    N  +   K  L ++++FG    +
Sbjct: 118 FYYKPRVDYEVLSEYH-EGVIALSACLAGEVQRYLARNMYEEGVKAALRYQEIFGKGNYF 176

Query: 184 VNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           + LQ H   ++     Q+++++    + LVATN+  +   +D  AHD+L+ +  S  ++ 
Sbjct: 177 LELQDHGIPEQRFVNQQLMRMSRELGIDLVATNDVHYTFADDASAHDILLCIQTSKKITD 236

Query: 243 KDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            DR +     +YLK+  EM  +F+  P+AL+NT +IA RC+  ++     LP++      
Sbjct: 237 TDRMKYEGGQYYLKSEQEMRELFAYAPQALDNTAKIAARCNVEIEFGVQKLPKYDTPA-- 294

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            +       LR     G   R            +D R+RLD+EL+VI  M +  YFLIV 
Sbjct: 295 -VYASSSEYLRWLCNRGFGKRYPD-------APEDVRKRLDYELSVINEMGYVDYFLIVW 346

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           DFI +AK N+I VGPGRGS AGSV AY L ITDIDP+++SL+FERFLNP+R+SMPD D+D
Sbjct: 347 DFINYAKSNDISVGPGRGSAAGSVVAYCLEITDIDPIKYSLIFERFLNPERVSMPDIDVD 406

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC +RR EVI YV  KYG +RV QI+TFG++ A+A ++DVGR L +PY+  D + K+IP 
Sbjct: 407 FCFERRQEVIDYVVRKYGKDRVCQIVTFGTMAARAVIKDVGRVLDLPYALRDSVSKMIPR 466

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
           +    +  +AI  +   +    +D +V  L++ S++LEGL RHAS HAAG+VI  + + +
Sbjct: 467 ELGITID-KAIEMNPELKALYNSDETVHDLIDKSRRLEGLPRHASMHAAGVVISQKAVDE 525

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            VP+ R       V QF M  +E+ GL+K DFLGL+TLT++Q +   + +     D+  I
Sbjct: 526 YVPLSRGS-DGSIVAQFVMTTLEELGLLKMDFLGLRTLTVIQSAEHMVRKVVPDFDIDKI 584

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            ++D   + +L+T  T G+FQLESSGM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y
Sbjct: 585 DYNDAAVFDMLSTGRTEGVFQLESSGMKSFMKELKPHSMEDIIAGISLYRPGPMDFIPQY 644

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              KN +  IV   P ++P+L+ T G I+YQEQVMQI + L+GYS   +D++RRAM KK 
Sbjct: 645 IKGKNDRSSIVYDCPQLEPILEPTYGCIVYQEQVMQIVRDLAGYSWGRSDLVRRAMSKKK 704

Query: 722 KEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
              M++++  FI         G   NGI + +A +I++ +  FA Y FNKSHAA YAV++
Sbjct: 705 AYVMEQERRNFIYGNPEENVKGCVNNGIDEKVAGHIYDNMIDFAKYAFNKSHAACYAVVA 764

Query: 774 YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
           YQTA++KTHYP +F+AA MT  +DN  K+ ++    RQ  I I+PP VN     F V  N
Sbjct: 765 YQTAFLKTHYPTQFMAALMTSVIDNSTKVAEYVMACRQMGIDILPPDVNEGEYGFSVSGN 824

Query: 834 RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            I Y L+AIK +G      ++     +  F +L DF  R+  K+ N+R +E+ + +GA D
Sbjct: 825 AIRYGLSAIKSLGRPVIEALVNERSENGKFKNLRDFIERMG-KEANKRTIENFIKSGAFD 883

Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSV 950
           CF  +R Q +     I       EKN      ++F    E+     +I +          
Sbjct: 884 CFEGNRRQQMLVYSQIVDDVARNEKNSLTGQMSLFDFVDEETKAEFEIKMPDVPEYGKKE 943

Query: 951 RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
               E+ VLG Y SGHPLD Y  +  K       +         
Sbjct: 944 LLAFEKEVLGIYVSGHPLDEYIDMWNKYTTARTSDFEPEDEDAQ 987



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 20/50 (40%)

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +  A   G+ + +  ++  K  K T+    + +VT  +     E   FP
Sbjct: 1032 RDEGALRDGDEVTIGGIITDKTVKSTKTNQLMAFVTVEDMYGTVEVIVFP 1081


>gi|148381315|ref|YP_001255856.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str. ATCC
            3502]
 gi|153930894|ref|YP_001385691.1| DNA polymerase III DnaE [Clostridium botulinum A str. ATCC 19397]
 gi|153935249|ref|YP_001389097.1| DNA polymerase III DnaE [Clostridium botulinum A str. Hall]
 gi|148290799|emb|CAL84933.1| DNA polymerase III alpha subunit [Clostridium botulinum A str. ATCC
            3502]
 gi|152926938|gb|ABS32438.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str. ATCC
            19397]
 gi|152931163|gb|ABS36662.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str. Hall]
          Length = 1185

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1071 (35%), Positives = 599/1071 (55%), Gaps = 55/1071 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            EK P +V L  H+ YSLL+ +  +++++ +       +IAITD   ++  ++F ++A   
Sbjct: 8    EKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKEAIKQ 67

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PIIGC++ +  +         +        +VLLV    GY+ L+E+VS+   ++  
Sbjct: 68   GIKPIIGCEIYVASKSMYIKQQDKEN---ETHHLVLLVKNEIGYKNLMEIVSKAS-VEGF 123

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                R+   +L++  +EGLI L+    G +       + + AE+  L +K +F +  Y+ 
Sbjct: 124  YYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLEKAEEVALIYKDIFKEGFYLE 182

Query: 186  LQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ H   ++      +V+++   ++PLVATN+  ++ +EDY++HD+L+ +     V +++
Sbjct: 183  LQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTVEEEN 242

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R  +   YLK+  EM   FS +PEALENTV+I+  C+F    H   LP+F  +E  D 
Sbjct: 243  RMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEEGVDP 302

Query: 304  QKEEENELRNKAVAG--LEVRLAQGAIAKGYHAQDYR-------------QRLDFELNVI 348
                   LR     G  L   + +  I K +   +               +RL++EL++I
Sbjct: 303  Y----EYLREICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNYELSII 358

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M +  YFLIV DFI++A +  I  GPGRGS AGS+ AY L IT IDP++++L+FERFL
Sbjct: 359  QQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFL 418

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NPDR+SMPD D DFC +RR EVI YV  KYG E V+QIITFG++ A+A +RDVGRA+  P
Sbjct: 419  NPDRISMPDIDSDFCYERRGEVIDYVVEKYGKENVSQIITFGTMAARACIRDVGRAMNYP 478

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            Y++VDR+ K+IP      +  +A+  +   +E    +  V  L+++++ LEGL RH STH
Sbjct: 479  YAEVDRIAKMIPTVLNITI-NKALELNPELKEVYDNEERVRELIDVARALEGLPRHTSTH 537

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAG+VI  +PL   VP+ R+   +  VTQF M  +E+ GL+K DFLGL+TLT+++ ++  
Sbjct: 538  AAGVVIASQPLVNYVPLQRN--EESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVRI 595

Query: 589  LAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            + + + + +DL  I F+D E Y ++    T+G+FQLES+GM   ++ ++PD +EDIIA +
Sbjct: 596  IKENKEINIDLDNIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGI 655

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            SLYRPGP+  I  Y   KN    I      ++P+L  T   I+YQEQVMQI + L+GYS+
Sbjct: 656  SLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDLAGYSM 715

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADY 759
              +D++RRAM KK  + M++++  FI         G   NGI + +A ++F+ +  FA Y
Sbjct: 716  GRSDLVRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMMDFASY 775

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSHAAAYAV+ +QTA++  +YP EF+AA +     + +K+  +   A+   I+I+ P
Sbjct: 776  AFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGIEIIAP 835

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLN 878
            ++N    +F V DNRI + L A+K VG     +I+ +   K  F  L DF ++VD+  +N
Sbjct: 836  NINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVDTSIIN 895

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSD 936
            +R++ESL+ AGA DC    R ++L   + I    Q  ++N      N+F    +    S 
Sbjct: 896  KRLVESLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDNKESSI 955

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------- 987
             I        +     + E+ + G YFSGHPL+ Y+  L+        + +         
Sbjct: 956  DIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKESLEGNL 1015

Query: 988  -----ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 +   G+ + +  M+    +K TR    + ++   +     E   FP
Sbjct: 1016 VDTISSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066


>gi|221369558|ref|YP_002520654.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides KD131]
 gi|221162610|gb|ACM03581.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides KD131]
          Length = 1163

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 508/1058 (48%), Positives = 668/1058 (63%), Gaps = 48/1058 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+VH+ YSLLEGA+ +  ++    A   PA+A+TDTN +F+ALEFS  A  
Sbjct: 1    MSNAPRFIHLRVHTEYSLLEGAVPVKKLIGLCTAAAMPAVAVTDTNAMFAALEFSVLASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPI+GCQ+ +  +        G+ P P  P +VLL  T  GY  L++L S +YL  +
Sbjct: 61   AGIQPIVGCQVSVAYE----TVALGERPKPPAP-VVLLAQTETGYGNLMKLSSCLYL-GK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 ++ LS L E   EGLI LTGG  GP+ R         AE  L     ++  RLYV
Sbjct: 115  EGALPQVTLSEL-ERHGEGLICLTGGPDGPVGRHLREGQRAKAEALLGRLAAIYPGRLYV 173

Query: 185  NLQRHRGY-------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             LQRH G        +R  E   V+LAY   LPLVATN+  F   E YEAHD L+ +A  
Sbjct: 174  ELQRHPGEGGRLTEAERATEPGHVELAYAMGLPLVATNDVYFPKPEMYEAHDALICIAEG 233

Query: 238  TVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              V Q   R R+TP HY K+ +EMV++F+DLPEA+EN+VEIARRC+F             
Sbjct: 234  AYVDQVAPRRRLTPQHYFKSEAEMVALFADLPEAVENSVEIARRCAFKAAKR-------- 285

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                     +E  ELR +A  GL  RLA   I      +DY  RL FEL +I +M F GY
Sbjct: 286  PPILPRFADDEVEELRRQAKEGLAARLA--VIPHAAPVEDYEARLAFELGIIEQMGFPGY 343

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFI+W K N IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMP
Sbjct: 344  FLIVADFIKWGKANGIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMP 403

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL 
Sbjct: 404  DFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLS 463

Query: 477  KLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            K+IP +   PVS+Q  +AD+ R REA   +  V RLL+   ++EGL R+ASTHAAG+VIG
Sbjct: 464  KMIPVEGVKPVSIQKALADEPRLREAAKTEEVVKRLLDYGMQVEGLLRNASTHAAGVVIG 523

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            DRPL +LVP+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q ++D +   G  
Sbjct: 524  DRPLDELVPLYQDPRSDMPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNAIDLIRGTGRP 583

Query: 596  VD------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            +                   +  IP +D  TY L     T+ +FQ+ESSGM  AL  M+P
Sbjct: 584  LHMAADGRVLYDPPPGAENDIGHIPLEDKATYELYAQAKTVAVFQVESSGMMDALRRMKP 643

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             CIEDI+ALV+LYRPGP++NI VY   K+G   + S+HP IDP+LKETQG+I+YQEQVMQ
Sbjct: 644  TCIEDIVALVALYRPGPMENIPVYCEVKHGLRDLESLHPTIDPILKETQGIIVYQEQVMQ 703

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKF 756
            IAQ++ GY+L  AD+LRRAMGKKI EEM K++ +FI GA K +GI    A  +F+LL KF
Sbjct: 704  IAQVMGGYTLGGADLLRRAMGKKIAEEMAKERPKFIEGAKKTHGIDAKKAGEVFDLLEKF 763

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M  ++   +K+  + ++  +  I+ 
Sbjct: 764  ANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREVDKLGIRT 823

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            + P VN     F V D  + Y+L A+K VG    R I+EA  D+PF +L D   RV+ K+
Sbjct: 824  VAPCVNASLATFTVRDGAVVYALGALKNVGVEAMRLIVEARGDRPFATLFDMARRVELKR 883

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            + +R LE L  AGA D    +R ++ ++LD +  Y+  + + R +   ++F  E G    
Sbjct: 884  IGKRPLEMLARAGAFDALDRNRARVFEALDALVAYSAAIHEARNSSQVSLFG-EAGADIP 942

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-- 994
            +  L          R   E + +GFY SGHPLD Y   L++  +          +     
Sbjct: 943  EPRLPSRDDWLPVERLAQEHQAIGFYLSGHPLDDYMGALKRRNVTTLAALTDLAQRGPMV 1002

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +LA  V S+Q+KK+ KG+R  +V  S+P   YE   F
Sbjct: 1003 AKLAGAVSSRQEKKSAKGNRFAFVQLSDPTGLYECTVF 1040


>gi|126463991|ref|YP_001045104.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides ATCC 17029]
 gi|126105802|gb|ABN78332.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides ATCC
            17029]
          Length = 1163

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 509/1058 (48%), Positives = 668/1058 (63%), Gaps = 48/1058 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+VH+ YSLLEGA+ +  ++    A   PA+A+TDTN +F+ALEFS  A  
Sbjct: 1    MSNAPRFIHLRVHTEYSLLEGAVPVKKLIGLCTAAAMPAVAVTDTNAMFAALEFSVLASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPI+GCQ+ +  +        G+ P P  P +VLL  T  GY  L++L S +YL  +
Sbjct: 61   AGIQPIVGCQVSVAYE----TAALGERPKPPAP-VVLLAQTEAGYGNLMKLSSCLYL-GK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 ++ LS L E   EGLI LTGG  GP+ R         AE  L     ++  RLYV
Sbjct: 115  EGALPQVTLSEL-ERHGEGLICLTGGPDGPVGRHLREGQRAKAEALLGRLAAIYPGRLYV 173

Query: 185  NLQRHRGY-------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             LQRH G        +R  E   V+LAY   LPLVATN+  F   E YEAHD L+ +A  
Sbjct: 174  ELQRHPGEGGRLTEAERATEPGHVELAYAMGLPLVATNDVYFPKPEMYEAHDALICIAEG 233

Query: 238  TVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              V Q   R R+TP HY K+ +EMV++F+DLPEA+ENTVEIARRC+F             
Sbjct: 234  AYVDQVAPRRRLTPQHYFKSEAEMVALFADLPEAVENTVEIARRCAFKAAKR-------- 285

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                     +E  ELR +A  GL  RLA   I      +DY  RL FEL +I +M F GY
Sbjct: 286  PPILPRFADDEVEELRRQAKEGLAARLA--VIPHAAPVEDYEARLAFELGIIEQMGFPGY 343

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFI+W K N IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMP
Sbjct: 344  FLIVADFIKWGKANGIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMP 403

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL 
Sbjct: 404  DFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLS 463

Query: 477  KLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            K+IP +   PVS+Q  +AD+ R REA   +  V RLL+   ++EGL R+ASTHAAG+VIG
Sbjct: 464  KMIPVEGVKPVSIQKALADEPRLREAAKTEEVVKRLLDYGMQVEGLLRNASTHAAGVVIG 523

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            DRPL +LVP+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q ++D +   G  
Sbjct: 524  DRPLDELVPLYQDPRSDMPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNAIDLIRGTGRP 583

Query: 596  VD------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            +                   +  IP +D  TY L     T+ +FQ+ESSGM  AL  M+P
Sbjct: 584  LHMAADGRVLYDPPPGAENDIGHIPLEDKATYELYAQAKTVAVFQVESSGMMDALRRMKP 643

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             CIEDI+ALV+LYRPGP++NI VY   K+G   + S+HP IDP+LKETQG+I+YQEQVMQ
Sbjct: 644  TCIEDIVALVALYRPGPMENIPVYCEVKHGLRDLESLHPTIDPILKETQGIIVYQEQVMQ 703

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKF 756
            IAQ++ GY+L  AD+LRRAMGKKI EEM K++ +FI GA K +GI    A  +F+LL KF
Sbjct: 704  IAQVMGGYTLGGADLLRRAMGKKIAEEMAKERPKFIEGAKKTHGIDAKKAGEVFDLLEKF 763

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M  ++   +K+  + ++  +  I+ 
Sbjct: 764  ANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREVDKLGIRT 823

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            + P VN     F V D  + Y+L A+K VG    R I+EA  D+PF +L D   RV+ K+
Sbjct: 824  VAPCVNASLATFTVRDGAVVYALGALKNVGVEAMRLIVEARGDRPFATLFDMARRVELKR 883

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            + +R LE L  AGA D    +R ++ ++LD +  Y+  + + R +   ++F  E G    
Sbjct: 884  IGKRPLEMLARAGAFDALDRNRARVFEALDALVAYSAAIHEARNSSQVSLFG-EAGADIP 942

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-- 994
            +  L          R   E + +GFY SGHPLD Y   L++  +          +     
Sbjct: 943  EPRLPSRDDWLPVERLAQEHQAIGFYLSGHPLDDYMGALKRRNVTTLAALTDLAQRGPMV 1002

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +LA  V S+Q+KK+ KG+R  +V  S+P   YE   F
Sbjct: 1003 AKLAGAVSSRQEKKSAKGNRFAFVQLSDPTGLYECTVF 1040


>gi|170756612|ref|YP_001783011.1| DNA polymerase III DnaE [Clostridium botulinum B1 str. Okra]
 gi|169121824|gb|ACA45660.1| DNA polymerase III, alpha subunit [Clostridium botulinum B1 str.
            Okra]
          Length = 1185

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1071 (35%), Positives = 599/1071 (55%), Gaps = 55/1071 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            EK P +V L  H+ YSLL+ +  +++++ +       +IAITD   ++  ++F ++A   
Sbjct: 8    EKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKEAIKQ 67

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PIIGC++ +  +         +        +VLLV    GY+ L+E+VS+   ++  
Sbjct: 68   GIKPIIGCEIYVASKSMYIKQQDKEN---ETHHLVLLVKNEIGYKNLMEIVSKAS-VEGF 123

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                R+   +L++  +EGLI L+    G +       + + AE+  L +K +F +R Y+ 
Sbjct: 124  YYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAEEVALIYKDIFKERFYLE 182

Query: 186  LQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ H   ++      +V+++    +PLVATN+  ++ +EDY++HD+L+ +     V +++
Sbjct: 183  LQYHGMEEQLKVNETLVKMSKDLYIPLVATNDVHYIRKEDYKSHDILLCIQTGKTVEEEN 242

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R  +   YLK+  EM   FS +PEALENTV+I+  C+F    H   LP+F  +E  D 
Sbjct: 243  RMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEEGVDP 302

Query: 304  QKEEENELRNKAVAG--LEVRLAQGAIAKGYHAQDYR-------------QRLDFELNVI 348
                   LR     G  L   + +  I K +   +               +RL++EL++I
Sbjct: 303  Y----EYLREICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNYELSII 358

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M +  YFLIV DFI++A +  I  GPGRGS AGS+ AY L IT IDP++++L+FERFL
Sbjct: 359  KQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFL 418

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NPDR+SMPD D DFC +RR EVI YV  KYG E V+QIITFG++ A+A +RDVGRA+  P
Sbjct: 419  NPDRISMPDIDSDFCYERRGEVIDYVVEKYGKENVSQIITFGTMAARACIRDVGRAMNYP 478

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            Y++VDR+ K+IP      +  +A+  +   +E    +  V  L+++++ LEGL RH STH
Sbjct: 479  YAEVDRIAKMIPTVLNITI-NKALELNPELKEVYDNEERVRELIDVARALEGLPRHTSTH 537

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAG+VI  +PL   VP+ ++   +  VTQF M  +E+ GL+K DFLGL+TLT+++ ++  
Sbjct: 538  AAGVVIASQPLVNYVPLQKN--EESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVRI 595

Query: 589  LAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            + + + + +DL  I F+D E Y ++    T+G+FQLES+GM   ++ ++PD +EDIIA +
Sbjct: 596  IKENKEINIDLDNIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGI 655

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            SLYRPGP+  I  Y   KN    I      ++P+L  T   I+YQEQVMQI + L+GYS+
Sbjct: 656  SLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDLAGYSM 715

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADY 759
              +D++RRAM KK  + M++++  FI         G   NGI + +A ++F+ +  FA Y
Sbjct: 716  GRSDLVRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMMDFASY 775

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSHAAAYAV+ +QTA++  +YP EF+AA +     + +K+  +   A+   I+I+ P
Sbjct: 776  AFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGIEIIAP 835

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLN 878
            ++N    +F V DNRI + L A+K VG     +I+ +   K  F  L DF ++VD+  +N
Sbjct: 836  NINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVDTSIIN 895

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSD 936
            +R++ESL+ AGA DC    R ++L   + I    Q  ++N      N+F    +    S 
Sbjct: 896  KRLVESLIKAGAFDCLKIYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDNKESSI 955

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------- 987
             I        +     + E+ + G YFSGHPL+ Y+  L+        + +         
Sbjct: 956  DIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKESLEGNL 1015

Query: 988  -----ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 +   G+ + +  M+    +K TR    + ++   +     E   FP
Sbjct: 1016 VDTISSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066


>gi|223888850|ref|ZP_03623441.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 64b]
 gi|223885666|gb|EEF56765.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 64b]
          Length = 1161

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1036 (37%), Positives = 605/1036 (58%), Gaps = 23/1036 (2%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A 
Sbjct: 14   GMSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AGI+PIIG +  +                     ++LL     GY+ L++L S  YL +
Sbjct: 74   KAGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y
Sbjct: 131  GFYYRPRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQRH   D+     ++V+ +    +PL A N+S +++ ED  A D+++ +      S 
Sbjct: 190  LELQRHGIKDQDIVNERLVKYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSD 249

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300
            ++R ++ T + Y+K++ EM  +F+DLPEALENTV I  +   F +    PILP +     
Sbjct: 250  ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVE 309

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             +        L +  + GL+                 + R  +EL+VI  M F GYFLIV
Sbjct: 310  FN---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGP--KVSLKEVLDDNSLKECFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I++    +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD++ +     + N+     ++F   +           + F   + S     E+ 
Sbjct: 898  TLFENLDHLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|15594924|ref|NP_212713.1| DNA polymerase III subunit alpha [Borrelia burgdorferi B31]
 gi|2688500|gb|AAC66944.1| DNA polymerase III, subunit alpha (dnaE) [Borrelia burgdorferi B31]
          Length = 1161

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1036 (37%), Positives = 605/1036 (58%), Gaps = 23/1036 (2%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A 
Sbjct: 14   GMSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AGI+PIIG +  +                     ++LL     GY+ L++L S  YL +
Sbjct: 74   KAGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y
Sbjct: 131  GFYYRPRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQRH   D+     ++V+ +    +PL A N+S +++ ED  A D+++ +      S 
Sbjct: 190  LELQRHGIKDQDIVNERLVKYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSD 249

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300
            ++R ++ T + Y+K++ EM  +F+DLPEALENTV I  +   F +    PILP +     
Sbjct: 250  ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVE 309

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             +        L +  + GL+                 + R  +EL+VI  M F GYFLIV
Sbjct: 310  FN---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGP--KVSLKEVLDDNSLKECFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I++    +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD++ +     + N+     ++F   +           + F   + S     E+ 
Sbjct: 898  TLFENLDHLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|254430744|ref|ZP_05044447.1| DNA polymerase III, alpha subunit subfamily, putative [Cyanobium sp.
            PCC 7001]
 gi|197625197|gb|EDY37756.1| DNA polymerase III, alpha subunit subfamily, putative [Cyanobium sp.
            PCC 7001]
          Length = 1180

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1056 (36%), Positives = 590/1056 (55%), Gaps = 39/1056 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++      PA+A+TD   ++ A+E  +    AGI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPAMVERAVELGMPALALTDHGVMYGAIELLKLCSKAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +       + +           +V+L   A GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVING---ALDDPNPPKKERRYHLVVLAKNAVGYRNLVKLTSISHLRGMRGRGI 118

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L++  +EGLI+ T    G I +A       VA +    ++++FGD  Y+ 
Sbjct: 119  FARACIDKQLLRQ-HSEGLIVATACLGGEIPQAILRGRPDVARQVAAWYQEVFGDDFYLE 177

Query: 186  LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H G  DR   +++ ++     + L+ATN++ +LS  D EAHD L+ V    ++S + 
Sbjct: 178  IQDHGGLEDRIVNTEIARIGQELGIELIATNDAHYLSVGDVEAHDALLCVLTGKLISDEK 237

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R R T   Y+K+ +EM+++F+D   P+ +   V    + +  ++ +  +    + +    
Sbjct: 238  RLRYTGTEYIKSEAEMLALFADHLEPDVIRRAVANTAQVAEKVEDYDILGRYQMPRFPIP 297

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                  + L   A  GL  RL     A+      Y +RL FEL V+ +M F  YFL+V D
Sbjct: 298  EGHTAVSYLSAVAEQGLRDRLE--LAAEAPFEPAYGERLRFELEVMEQMGFPTYFLVVWD 355

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I++A++N IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 356  YIRFARENRIPVGPGRGSAAGSLVAYALGITNIDPVVHGLLFERFLNPERKSMPDIDTDF 415

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KLIP  
Sbjct: 416  CIERRGEVIDYVTRRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 475

Query: 483  PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
               P  L+ +    +  + FRE    DP V R ++++ ++EG  +    HAAG+VI   P
Sbjct: 476  RGKPAKLKEMIGPESPAAEFREKYEKDPDVRRWVDMAMRIEGTNKTFGVHAAGVVIAADP 535

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            L +LVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K+LD + Q  G  VD
Sbjct: 536  LDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLDLVQQSTGETVD 594

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               +P DD  TY LL      GIFQLESSGMRQ +  ++P C+EDI ++++LYRPGP+D 
Sbjct: 595  PDKLPLDDAATYGLLARGDLEGIFQLESSGMRQIVRDLKPSCLEDISSILALYRPGPLDA 654

Query: 658  --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  + NRK+G+E I   H  + P+L ET G+++YQEQ+M+IAQ L+GYSL EAD+LRR
Sbjct: 655  GLIPKFINRKHGREAIDFAHDKLQPILNETYGIMVYQEQIMKIAQDLAGYSLGEADLLRR 714

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK K EM+K +  F+ GA++ G+   +A  +FE +  FA+Y FNKSH+ AY  +++Q
Sbjct: 715  AMGKKKKSEMEKHQTIFVEGATRRGVDTKVAEALFEQMVLFAEYCFNKSHSTAYGAVTFQ 774

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYPV ++AA +T+     +K++++  +     I++MPP VN   +DF    +RI
Sbjct: 775  TAYLKAHYPVAYMAALLTVNAGASDKVQRYIANCNAMGIEVMPPDVNASGIDFTPVGDRI 834

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L+A++ +G    R ++E    D PF SL D C R+  ++LNRR LE+L+ +GALD  
Sbjct: 835  LFGLSAVRNLGDGAIRQLIEVRQEDGPFRSLADLCDRIPGQQLNRRALEALIHSGALDAL 894

Query: 895  GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE---------------KGTFSDK 937
                +R QL+  LD I  +A    ++R +   N+F                   G  S  
Sbjct: 895  EPSGNRAQLMADLDLILDWASSRARDRASGQGNLFDLMASSSAAEPASAGGAGGGDLSTA 954

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
                  +    + +   E+ ++GFY S HPL      +R +                +  
Sbjct: 955  PKAAPVNDYPPTEKLRLEKELVGFYLSDHPLKQLGRPVRLLSPVALATLEEQPDKAKVSA 1014

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             AMV   +Q  TRKG R+  +   +     EA  FP
Sbjct: 1015 VAMVPELRQVTTRKGDRMAVLQLEDLTGSCEAVVFP 1050


>gi|14195653|sp|O51526|DPO3A_BORBU RecName: Full=DNA polymerase III subunit alpha
          Length = 1147

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1035 (37%), Positives = 605/1035 (58%), Gaps = 23/1035 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  
Sbjct: 1    MSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  +                     ++LL     GY+ L++L S  YL + 
Sbjct: 61   AGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-EG 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+
Sbjct: 118  FYYRPRIDKDDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYL 176

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   D+     ++V+ +    +PL A N+S +++ ED  A D+++ +      S +
Sbjct: 177  ELQRHGIKDQDIVNERLVKYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDE 236

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKECD 301
            +R ++ T + Y+K++ EM  +F+DLPEALENTV I  +   F +    PILP +      
Sbjct: 237  NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEF 296

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            +        L +  + GL+                 + R  +EL+VI  M F GYFLIV 
Sbjct: 297  N---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIVW 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID
Sbjct: 347  DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+
Sbjct: 407  FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 466

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+ 
Sbjct: 467  GP--KVSLKEVLDDNSLKECFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
             VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  I
Sbjct: 525  YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKNI 584

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  +
Sbjct: 585  PDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQF 644

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK 
Sbjct: 645  IAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKK 704

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K 
Sbjct: 705  EDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLKA 764

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L  
Sbjct: 765  NYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLNG 824

Query: 842  IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK +G      I++    +  + S EDF  RVD K +N++ LES + +G  D    +R  
Sbjct: 825  IKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRKT 884

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQRV 958
            L ++LD++ +     + N+     ++F   +           + F   + S     E+ +
Sbjct: 885  LFENLDHLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKEL 944

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGW 1017
            LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ +
Sbjct: 945  LGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMAF 1004

Query: 1018 VTFSEPAKEYEANFF 1032
                +     +   F
Sbjct: 1005 GVIEDFKGAIDIVVF 1019


>gi|268679272|ref|YP_003303703.1| DNA polymerase III subunit alpha [Sulfurospirillum deleyianum DSM
            6946]
 gi|268617303|gb|ACZ11668.1| DNA polymerase III, alpha subunit [Sulfurospirillum deleyianum DSM
            6946]
          Length = 1182

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1062 (36%), Positives = 608/1062 (57%), Gaps = 50/1062 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            + HL +H+ YSLL+GA  +  +  K+ A    ++AITD  N+F AL+F +     GI+PI
Sbjct: 6    YTHLHLHTEYSLLDGANKIGKLAKKLKAQGVGSVAITDHGNMFGALDFYKTMRKEGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  I  QD++     G         + L      GY+ L+ L S  Y+        R
Sbjct: 66   IGIEAYIHNQDDI-----GDKTTKQRFHLCLFAKNEIGYKNLMYLSSMSYIKG-FYYYPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTFKKLFGD 180
            I    L+E  +EGLI  +    G ++     N+           + A++  L +K +FGD
Sbjct: 120  INKQLLKE-HSEGLICSSACLQGEVNWHLNLNNKRNVQFGAKGYERAKEVALEYKAIFGD 178

Query: 181  RLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ + RH   D+ + +  ++++A    + ++ATN++ +L  +D EAH+  M +A +  
Sbjct: 179  DFYLEIMRHGINDQMFIDDNILRIAKETGIKVIATNDTHYLEPDDAEAHEAFMCIAMNKE 238

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV-----HAPILP 293
                +R R +  + ++K+  ++  +F D+PE LENT EI  +C+  +++           
Sbjct: 239  FDDPNRLRHSVHEFFVKSPEQIADLFVDIPEVLENTQEIVDKCNLEIKLGDPTPPKFKFT 298

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            +          + +++   +K   GL+ RL           ++Y+ RL+ E++VI  MKF
Sbjct: 299  KEYAAREGLSFESDDDFFAHKCREGLKERLKY---VDASKHEEYKARLEREISVICTMKF 355

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GY LIV DFI+ AK   +PVGPGRGS AGS+ AY+L ITD+DP+ ++LLFERFLNP+R+
Sbjct: 356  PGYMLIVWDFIREAKSRGVPVGPGRGSAAGSLVAYSLFITDLDPMPYNLLFERFLNPERI 415

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPD D+DFCQ RR E+I YV  KYG   VAQ+ITFG L AK  +RDV R L +PY++ D
Sbjct: 416  SMPDIDVDFCQSRRGEIIDYVVEKYGRYNVAQVITFGKLLAKGVIRDVARVLAIPYAEAD 475

Query: 474  RLCKLIPNDPAHPV-----------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             + KLIP++    +              A   + + RE    DP + R+ + +  LEGL 
Sbjct: 476  AMAKLIPDELGITLNGIGVEGEEGFKAGAYQKEPKLRELIERDPRMQRVWKFALALEGLN 535

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R++  HAAG+VI D  L    P+Y+    D  VTQ+++ ++E   LIKFDFLGLKTLT++
Sbjct: 536  RNSGMHAAGVVISDEELWHKTPLYQPSGEDHLVTQYSLNFLEDVDLIKFDFLGLKTLTVI 595

Query: 583  QKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              +L  +  R  K +D + +  +D + Y L+ +  T+G+FQ+ESSGM+   E ++P+  E
Sbjct: 596  DNALKLIKARYNKTIDFNALDLNDPKVYELIQSGDTIGLFQIESSGMQSLNERLKPNTFE 655

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQV 695
            D+IA+++LYRPGP+++ +   + +RK+G++++          + P+L+ T GVI+YQEQV
Sbjct: 656  DLIAVLALYRPGPMESGMLDDFIDRKHGRKEVTYFFDEFTKPLQPILEPTYGVIVYQEQV 715

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            MQI Q + G+SL E+D++RRAMGKK  + M ++ E F  GA K G+ +  A+ +F L+ K
Sbjct: 716  MQIVQSIGGFSLGESDLIRRAMGKKKIDYMKQKAEEFADGAVKQGLDRAHAIELFGLIEK 775

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA YGFNKSH+AAYA+I++QTA++K +YP EF+AA +T E DN +KI K+  + ++  I+
Sbjct: 776  FAGYGFNKSHSAAYALITFQTAYLKCYYPQEFMAALLTSEQDNTDKIVKYIDEVKRLGIK 835

Query: 816  IMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
            ++PPS+    ++F       G   I + + AIKGVG      I+EA AD PF  + DF S
Sbjct: 836  LLPPSIQHSLIEFSAITDSDGCEAILFGMGAIKGVGNAAISKILEARADAPFSDMSDFIS 895

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            R+D  K+N++VLESL+ +G+ D FGYSR  LL+S+D I + +    + +     ++F   
Sbjct: 896  RIDGSKVNKKVLESLIKSGSFDGFGYSRRALLESIDTIIEASGECSRAKKMAEYSLFGDS 955

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
            +   S  + +E  S  +S    E E+  +GFY SGHPLD ++  + +M      E     
Sbjct: 956  EEMTSVAVKIEPISEFDSKRMLELEKETIGFYISGHPLDAFRAQIDEMNYMLSSEKDQIE 1015

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             G+       V S  +K ++KG++ G V+  +     E   F
Sbjct: 1016 DGSKALFIGKVESITEKMSKKGNKFGVVSLMDFHGSMELTVF 1057


>gi|296101353|ref|YP_003611499.1| DNA polymerase III subunit alpha [Enterobacter cloacae subsp. cloacae
            ATCC 13047]
 gi|295055812|gb|ADF60550.1| DNA polymerase III subunit alpha [Enterobacter cloacae subsp. cloacae
            ATCC 13047]
          Length = 1160

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1049 (40%), Positives = 617/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F   A  
Sbjct: 1    MAE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PI+G    +          Q +     +  I +L     GYQ L  L+S+ Y    
Sbjct: 60   AGMKPIVGADFHV----------QSELLGDEMTQISVLAMNNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+  EGL++++GG  G + +     +S + ++ +  +++ F DR Y+
Sbjct: 110  GALGPWIDRDWLAEL-NEGLLLISGGRMGDVGKCLLRGNSALVDQCVSFYEEYFPDRYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  FL   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEESYLHAAVALAEARGLPVVATNDVRFLEAGDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +   Y+++  EM  +FSD+PEALEN+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSAQQYMRSEEEMCELFSDIPEALENSVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GEMTTEDFLVMKSKEGLEERLEFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K    
Sbjct: 523  TDFAPLYCDEAGQHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA  +   F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCL 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYIKEIERYVGGYRLKDMHPTERGKITTAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|119774291|ref|YP_927031.1| DNA polymerase III subunit alpha [Shewanella amazonensis SB2B]
 gi|119766791|gb|ABL99361.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
          Length = 1157

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1045 (40%), Positives = 617/1045 (59%), Gaps = 36/1045 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S+ +G   +  IL K  A+   AIA+TD NNL   ++F       G
Sbjct: 2    SQPRFVHLRVHSDFSMTDGLAKVKPILGKAEAEGMAAIALTDQNNLCGLVKFYSTCHDKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIG    + +                  ++ +L    EGYQ L +L+S+ YL  Q +
Sbjct: 62   IKPIIGADFWMLVPG----------FEDEFCAVTVLAMDNEGYQNLTQLISQAYLRGQVQ 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              V I   WL    + G+++L+G   G + +A    ++  A      ++K F DR ++ L
Sbjct: 112  GRVAIDQEWLLTYNS-GILLLSGAKEGDLGKALIKGNAAQAASLTQFYQKHFPDRYFIEL 170

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        V+ A    LP+VATN  +FLS ED+EAH++ +A+     ++   R
Sbjct: 171  IRTGRADEETYLHMAVKHAAEVGLPVVATNQVVFLSPEDFEAHEIRVAIHDGFTLADNRR 230

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   YL++  EM  +FSD+PEA+ENTVEIA+RC+  +++                +
Sbjct: 231  PKKYSEQQYLRSEDEMCELFSDIPEAIENTVEIAKRCNVTVRLGEYF-----LPNFPTGE 285

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                + L  ++  GLE RL         +    ++Y +RLD EL VI +M F GYFLIV 
Sbjct: 286  LSTADFLVERSKEGLEERLEFLFPDPAERAEKRKEYDERLDIELQVINQMGFPGYFLIVM 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346  EFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L   Y  VDR+ K+IP 
Sbjct: 406  FCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVVRDVGRVLGHSYGFVDRISKMIPP 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +P   +  +A   +   +EA  AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466  EPGMTL-AKAFEVEPGLQEAYDADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V
Sbjct: 525  FSPLYCDAEGKNPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKLGKPPV 584

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585  DIAAIPLDDSKSFSVLKRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657  NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V  + +RK+G E+I        H  + P+L+ T G+I+YQEQVMQIAQ L+GY+L  
Sbjct: 645  SGMVDNFIDRKHGHEEISYPDATWQHESLKPILEPTYGIILYQEQVMQIAQTLAGYTLGG 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F +G+ KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705  ADMLRRAMGKKKPEEMAKQRAGFEAGSVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTH+P EF+AA M+ +MDN +KI     +  +  ++I+PP VN     F 
Sbjct: 765  ALVSYQTLWLKTHFPSEFMAAVMSADMDNTDKIVTLVDECDRMGLKIIPPDVNKGLFKFT 824

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V ++  I Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+++
Sbjct: 825  VDEDLNIVYGIGAIKGVGEGPVEAILEARKDGPFTDLFDFCARIDLKKLNKRVIEKLIYS 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVEN 947
            GALD  G  R  ++ +L    + A    K +     ++F        D+     + +   
Sbjct: 885  GALDSLGPHRASMMATLPEAMQAADQHAKAQATGQHDMFGLLNDDQQDEKQQFVECTPWP 944

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ +  
Sbjct: 945  DKIWLEGERETLGLYLTGHPINQYLKELKNYTSGRLKDIHPTERGKTVKAAGLVVASRVM 1004

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++GS++G +T  + +   E   F
Sbjct: 1005 LTKRGSKMGLLTLDDKSARLEVMLF 1029


>gi|224532747|ref|ZP_03673364.1| DNA polymerase III subunit alpha [Borrelia burgdorferi WI91-23]
 gi|224512365|gb|EEF82749.1| DNA polymerase III subunit alpha [Borrelia burgdorferi WI91-23]
          Length = 1161

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1036 (37%), Positives = 603/1036 (58%), Gaps = 23/1036 (2%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A 
Sbjct: 14   GMSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             +GI+PIIG +  +                     ++LL     GY+ L++L S  YL +
Sbjct: 74   KSGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y
Sbjct: 131  GFYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQRH   D+     ++V  +    +PL A N+S +++ ED  A D+++ +      S 
Sbjct: 190  LELQRHGIKDQDIVNERLVNYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSD 249

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300
            ++R ++ T + Y+K++ EM  +F+DLPEALENTV I  +   F +    PILP +     
Sbjct: 250  ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVE 309

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             +        L +  + GL+                 + R  +EL+VI  M F GYFLIV
Sbjct: 310  FN---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGP--KVSLKEVLDDNFLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRNVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I++    +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F   +           + F   + S     E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|319425768|gb|ADV53842.1| DNA polymerase III, alpha subunit [Shewanella putrefaciens 200]
          Length = 1157

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1047 (40%), Positives = 602/1047 (57%), Gaps = 37/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NN    ++F      
Sbjct: 1    MSD-PRFVHLRVHSDFSMSDGVAKVKPILAQVEALGMAAVALTDQNNFCGLVKFYSGCHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q         ++ ++     GYQ L +++S+ YL  Q
Sbjct: 60   AGIKPIIGADFWM----------QVPGFEGEFCALTIIAMNNVGYQNLTQIISQAYLRGQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                V I   WL     EG+++L+G   G I +A    ++   E     ++  F +R ++
Sbjct: 110  VAGRVVIDQEWLLTY-NEGILLLSGAKEGDIGKALLKGNNTQVESLCEFYQTHFAERYFL 168

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R     V LA    +P+VATN  +FL  ED++AH++ +A+     ++  
Sbjct: 169  ELIRTGRPDEERYLHMAVALAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   YL++  EM  +F+D+P AL NTVEIA+RC+  ++++              
Sbjct: 229  RRPKKYSEQQYLRSEEEMCELFADIPAALSNTVEIAKRCNVTIRLYEYF-----LPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L + +  GLE RLA         A+   +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMSIEDFLVDCSKKGLEERLAFLFPDPQVRAERRGEYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   +   +E+  AD  V  L+++ +KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPEPGMTL-AKAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +          
Sbjct: 523  TDFAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PVRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP +F+AA M+ +MDN +KI     +  +  + ++PP VN     
Sbjct: 763  AYALVSYQTLWLKTHYPSQFMAAVMSADMDNTDKIVTLVDECERMGLTLIPPDVNKGLFK 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+
Sbjct: 823  FTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLI 882

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945
             AGALD  G  R  ++ +L    + A    K +     ++F        D K    + + 
Sbjct: 883  CAGALDSLGPHRASMMATLPEAMRAADQHAKAQAIGQHDMFGLLNSEPEDSKQQFVECTP 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ +
Sbjct: 943  WPDKIWLEGERETLGLYLTGHPINQYLKELKYYTSGRLKDVHPTERGKTVKAAGLVVATR 1002

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++GS++G +T  + +   E   F
Sbjct: 1003 VMLTKRGSKMGLLTLDDKSARLEVMLF 1029


>gi|127513548|ref|YP_001094745.1| DNA polymerase III subunit alpha [Shewanella loihica PV-4]
 gi|126638843|gb|ABO24486.1| DNA polymerase III, alpha subunit [Shewanella loihica PV-4]
          Length = 1157

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1047 (40%), Positives = 606/1047 (57%), Gaps = 37/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS +S+ +G   +  IL K + DQ  A+A+TD  NL   ++F      
Sbjct: 1    MSE-PRFVHLRVHSDFSMSDGLAKVKPILAKASEDQMAALALTDNTNLCGLVKFYGGCHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+GC   + +                  S+ +L    EGY+ L  L+S  YL   
Sbjct: 60   AGIKPIVGCDFFMLVPG----------FEDEFCSLTVLAMNNEGYKNLTLLISDAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K    I  +WL+   +EGLI+L+G   G + +A    +    +  +  ++  F DR Y+
Sbjct: 110  VKDRAVIDQAWLERY-SEGLILLSGAKDGDVGKALLKGNQGQVDSLVAFYQTHFPDRYYL 168

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R     V+LA   +LP+VATN  +F+  E +EAH++ +A++    ++  
Sbjct: 169  ELIRTGRPDEERYLHMAVELAGEKDLPVVATNQVVFIQPEQFEAHEIRVAISDGFTLADP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +   Y + + EM  +F D+PEAL+N+VEIA+RC+  +++               
Sbjct: 229  RRPRRYSEQQYFRIQDEMCELFDDIPEALQNSVEIAKRCNVTVRLGEYF-----LPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L   +  GLE RL      +   A+   +Y +RLD EL VI  M F GYFLI
Sbjct: 284  GDLSIEDFLVEVSKKGLEERLEFLFPDEAQRAERRGEYDERLDVELTVINNMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW K N IP+GPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWGKDNGIPIGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ K+I
Sbjct: 404  VDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKMI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   +    EA  AD  V  L+++ + LEG+ R+A  HA G+VI    +
Sbjct: 464  PAEPGMTL-AKAFEAEPALPEAYDADEEVKDLIDMCRVLEGVTRNAGKHAGGVVIAPTVI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-----DFLAQRGV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L         Q   
Sbjct: 523  TDFAPLYCDAEGHNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPHLAKQGKE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  I  DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PVRIEAIVLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  +  RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIERKHGREEVSYPDQQWQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP VN     
Sbjct: 763  AYALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLLPPDVNKGLFR 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F V D+  I Y + AIKGVG      I++A  D PF  L DFC+RVD KKLNRRV+E L+
Sbjct: 823  FTVDDDLNIVYGIGAIKGVGEGPVESILKAREDGPFIDLFDFCARVDLKKLNRRVIEKLI 882

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945
             AGALD  G  R  ++ +L    + A    K       ++F        D K      + 
Sbjct: 883  CAGALDNLGPHRAAMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDNKQQFVHCTP 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                V  E E+  LG Y +GHP++ Y   L+       ++   T RG   + A +VV+ +
Sbjct: 943  WPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTTKAAGLVVATR 1002

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++GS++G VT  + +   E   F
Sbjct: 1003 VMMTKRGSKMGLVTLDDKSARLEVMLF 1029


>gi|302380218|ref|ZP_07268690.1| DNA polymerase III, alpha subunit [Finegoldia magna ACS-171-V-Col3]
 gi|302312001|gb|EFK94010.1| DNA polymerase III, alpha subunit [Finegoldia magna ACS-171-V-Col3]
          Length = 1161

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1050 (35%), Positives = 585/1050 (55%), Gaps = 44/1050 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G   +  +LDK+   +  AIAITD  ++F  ++F ++     I+P
Sbjct: 4    TFTHLHVHTEYSLLDGFSPIEKLLDKVEELKMKAIAITDHGSMFGTVKFYKECKKRNIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++    +D+     + K        +VLL    +GY  L+++VS  Y ++      
Sbjct: 64   IIGCEIYTTNKDHKIKNPENKF----YNHLVLLAKNQQGYSNLMKIVSLGY-VEGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+  + L++  +EG+I L+    G +  +        A+      K ++G+  Y+ LQ H
Sbjct: 119  RVDKNTLRKY-SEGIIALSACLKGEVQESLIRYGYDKAKDVAKELKDIYGEDFYLELQNH 177

Query: 190  RGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +       + ++A   ++ LV TN+  ++ +EDY+ H++L+ +     + + ++   
Sbjct: 178  SSREDMVVMENIPKIAKELDIGLVCTNDVHYIEKEDYKIHNILICLQTGKTIEEDNKMSY 237

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + +L++  +M  +F D PEA+ENT +IA  C+  L+     LP F   E        
Sbjct: 238  IPGEFFLRSEEQMKDLFKDYPEAIENTKKIAEMCNVELEFGHLHLPYFAIPEGF----TN 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + L+     GLE R A          Q+ ++R ++EL+VI +M +  YFLIV DFI++A
Sbjct: 294  SSYLKKLVFDGLEKRFAND-----ERLQEAKERCEYELSVIEKMGYVDYFLIVWDFIRFA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K  +IPVGPGRGS AGS+ +Y L ITDI+PL + L+FERFLNP+R+SMPD DIDFC +RR
Sbjct: 349  KSQDIPVGPGRGSAAGSIISYCLEITDINPLDYDLIFERFLNPERVSMPDIDIDFCYERR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI YV NKYG ++VAQI+TFG++ A+ A+RDVGR L M +  VD   K +PN     +
Sbjct: 409  EEVIDYVVNKYGEDKVAQIVTFGTMAARNAIRDVGRVLAMDFKTVDDTAKKVPNLLNINI 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +++     FR+A   +  V +L+++++++EG+ RH STHAAG+VI   P+ + VP+  
Sbjct: 469  D-KSLEISPEFRKAYEENRDVKKLVDVARRVEGMPRHTSTHAAGVVISKLPIMEYVPL-- 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
             +  D  +TQFNM  +E+ GL+K DFLGL+TLT++   + ++ + + + V+   +  +D 
Sbjct: 526  AINKDAVITQFNMTELEELGLLKMDFLGLRTLTVISDCIKYIKKNKNIDVNFEDMNENDP 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +   + T   TLGIFQ ES GMR  L+ ++P   +D+IA  +L+RPGP++ I  Y + K+
Sbjct: 586  KVLSMFTVAQTLGIFQFESQGMRNFLKELKPTKFDDLIAANALFRPGPMNEIPTYIHNKH 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +E +  + PL++ +LK T G I+YQEQVMQI Q ++G+SL EAD LRRAM KK  + M+
Sbjct: 646  NEEDVEYLSPLLEDILKPTYGTIVYQEQVMQIVQKIAGFSLGEADNLRRAMSKKKMKVME 705

Query: 727  K------------QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
                              I GA + G+ + +A  I++L+  FA Y FNKSH+AAY++++ 
Sbjct: 706  DGRKEFIFGKEDENGNILIEGAIRRGVEEDVANKIYDLMIDFAKYAFNKSHSAAYSLVAM 765

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            +TAW+K +YPVEFLAA ++  M N  +I  + ++AR+ +I+I PP +N     F V DN 
Sbjct: 766  RTAWLKYYYPVEFLAALISSVMGNTSQISLYIEEARRLDIEISPPDINYSLDKFDVKDNS 825

Query: 835  IYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGA 890
            I Y L AIK VGT      I+  + +  F S  DF  R+   D   +N+R +ESL+ AGA
Sbjct: 826  IIYGLKAIKNVGTNLIDQTIISRNENGKFKSFRDFVERIYAKDKSAINKRSIESLIKAGA 885

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSS 949
                G +R  L+    +I    Q   KN      N+F   E    +D+    +    + S
Sbjct: 886  FSSLGETRATLMLQYQSIIDSVQSGLKNNVPGQSNLFDMFESNEENDRDDFTRREEFDKS 945

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI------RGNNIRLAAMVVS 1003
                 E+ VLG Y S HPL  Y  I+ +       +            G  +++  ++ S
Sbjct: 946  ELLRMEKEVLGIYLSDHPLRAYSSIIDQYSNFSTGDLEDDAYNEKNFDGKRVKVVGIIES 1005

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +K T+    + +V F +     E   FP
Sbjct: 1006 INKKFTKNQKIMEFVKFEDLYGTMELIVFP 1035


>gi|261338818|ref|ZP_05966676.1| hypothetical protein ENTCAN_05013 [Enterobacter cancerogenus ATCC
            35316]
 gi|288318641|gb|EFC57579.1| DNA polymerase III, alpha subunit [Enterobacter cancerogenus ATCC
            35316]
          Length = 1160

 Score =  775 bits (2001), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1049 (40%), Positives = 612/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F   A  
Sbjct: 1    MAE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PI+G    +          Q +     +  I +L     GYQ L  L+S+ Y    
Sbjct: 60   VGMKPIVGADFHV----------QSELLGDEMTQISVLAMNNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G Q   I   WL E+  EGL++++GG  G + +     +S + ++ +  +++ F DR Y+
Sbjct: 110  GAQGPWIDRDWLAEL-NEGLLLISGGRMGDVGKCLLRGNSALVDQCVSFYEEHFPDRYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  FL   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRADEENYLHAAVALAEQRGLPVVATNDVRFLESGDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +   Y++   EM  +FSD+PEALEN+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSSQQYMRTEEEMCELFSDIPEALENSVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL      +    +    Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDFLVVKSKEGLEERLEFLFPDEAERKEKRPPYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K  L 
Sbjct: 523  TDFAPLYCDEAGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALKMINPRREKQGLE 582

Query: 600  L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                  IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y + AIKGVG      I+EA  +   F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNEHGEIVYGIGAIKGVGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYSNCQ 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPINQYIKEIERYVGGNRLKDMHPTDRGKITTAAGLVIA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|269926189|ref|YP_003322812.1| DNA polymerase III, alpha subunit [Thermobaculum terrenum ATCC
            BAA-798]
 gi|269789849|gb|ACZ41990.1| DNA polymerase III, alpha subunit [Thermobaculum terrenum ATCC
            BAA-798]
          Length = 1180

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1044 (35%), Positives = 584/1044 (55%), Gaps = 39/1044 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL +HS YSLL+G   + + +    A    AIA+TD   ++ A+E   +A  AGI
Sbjct: 2    SSDFVHLHLHSDYSLLDGLGKIKDYVSLAKAYGMKAIALTDHGVMYGAIEMYTEALEAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC+L +  +       +  + +     +++L    EGYQ LI+LVS  +L +    
Sbjct: 62   KPIIGCELYVAPRSRHDREKRLDSDYA---HLLVLAKDYEGYQNLIKLVSYAFL-EGYYY 117

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              RI    L +  ++GLI+ +    G + +       + A +    ++ + G +  ++ L
Sbjct: 118  KPRIDHELLAKY-SKGLIVTSSCIGGEVPQLLLQGKDKEARELADKYRSIVGRENYFIEL 176

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   ++    +++++LA   E+PLVAT +  +  +ED    D+L+ V     V+ K+R
Sbjct: 177  QDHPFEEQRIANTKLIELAKDLEIPLVATCDVHYPRQEDAAIQDILLCVQTGKQVTDKNR 236

Query: 246  PRVTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R++ D        EM   F D PEA++NT  IA  C+  + +   ILP F   E  D+Q
Sbjct: 237  MRMSSDTNYMRSPQEMEQAFRDYPEAIKNTALIAEMCNLQIPMGKWILPHFDVPEGYDLQ 296

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + LR     GL               Q+ R RL++EL+VI    ++ Y LIV DF+
Sbjct: 297  ----SYLRYLCEEGLRQ-------KYSEVTQEIRDRLEYELDVINTKGYTAYMLIVQDFV 345

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WA+   I     RGS AGS+ +Y L IT  DP+ + L FERFL   R S PD D+DF  
Sbjct: 346  NWARSRGI-AVTSRGSAAGSLVSYLLNITTADPIEYKLPFERFLTIHRPSPPDIDMDFED 404

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR+EVI YV +KYG E VAQIITFG+++A+AA+RDVGRAL + YS  D + K+I    +
Sbjct: 405  KRREEVIEYVTSKYGEENVAQIITFGTMEARAAVRDVGRALGISYSDTDTIAKMIQPGWS 464

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 +A+ +    R+    D  + +L++++ KLEG+ RHASTHAAG++I   P+    P
Sbjct: 465  IK---EALENSLALRQWYERDERIKQLIDVASKLEGVTRHASTHAAGVIISREPIINYAP 521

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            + +D     P+ QF+M+  EK GL+K DFLGL  L++L +++  + Q RG+ ++L  +P 
Sbjct: 522  LQKDKNGSRPLVQFDMRMCEKIGLLKMDFLGLANLSILGRAVKTIKQTRGIDIELDKLPL 581

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +TY LL++  T G+FQLES+GMR+ ++ ++P  I D+ A+++LYRPGP+D I  Y  
Sbjct: 582  DDTKTYELLSSGETTGVFQLESAGMRRYIKELKPSNIRDVAAMIALYRPGPMDMIPTYIA 641

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+E +  + P ++P+LK++ GV++YQ+ ++ IA  ++GY+  EAD LR+A+GKKI+E
Sbjct: 642  RKHGREPVEYLVPGLEPILKDSYGVLVYQDDILLIAIEIAGYTWEEADKLRKAVGKKIRE 701

Query: 724  EMDKQKERFISGASKNGI-SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E++ Q+++FI G  ++G  S   A  +++ +  FA YGFNK+HAAAY++++YQTA++K +
Sbjct: 702  ELEAQRDKFIKGCQEHGGLSPEKARELWDWMEPFARYGFNKAHAAAYSLVAYQTAYLKAN 761

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-------- 834
            YP E++++ +T+ MDN EK+     +  +  I+++PPSVN    +F +            
Sbjct: 762  YPSEYMSSLLTVGMDNSEKVASGIVECNRMGIRVLPPSVNDSFEEFTLEPQSQRPGEPIP 821

Query: 835  IYYSLAAIKGVGTTTARHIMEASA---DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            I + L A+K VG+     I+ A     DK F S E FC+ VD K++N+R LESL+ AGA 
Sbjct: 822  IRFGLGAVKNVGSGPISAIVSARESLPDKRFKSFEHFCTVVDFKQINKRALESLIKAGAF 881

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KGTFSDKITLEKFSVENSS 949
            D FG  R QLL ++D      Q +++       ++F            +TL +       
Sbjct: 882  DEFG-HRSQLLAAIDEAIALNQKMQRASDLGQFSLFGDAFSSQDHLPSLTLPEVDEAPKE 940

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 E+ +LG Y S HPL+      R        E    + G  +R+AAM+V+ Q + T
Sbjct: 941  QLLAWEKEMLGLYLSEHPLNAVLGKRRLDSTSLISEISEEMVGQTVRVAAMLVNPQIRTT 1000

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
            ++   +      +     +   FP
Sbjct: 1001 KRQQEMLIGKLEDQTSSIDFVVFP 1024


>gi|77465552|ref|YP_355055.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides 2.4.1]
 gi|77389970|gb|ABA81154.1| DNA polymerase III alpha chain [Rhodobacter sphaeroides 2.4.1]
          Length = 1163

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 507/1058 (47%), Positives = 666/1058 (62%), Gaps = 48/1058 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+VH+ YSLLEGA+ +  ++    A   PA+A+TDTN +F+ALEFS  A  
Sbjct: 1    MSNAPRFIHLRVHTEYSLLEGAVPVKKLIGLCTAAAMPAVAVTDTNAMFAALEFSVLASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPI+GCQ+ +  +        G+ P P  P +VLL  T  GY  L++L S +YL  +
Sbjct: 61   AGIQPIVGCQVSVAYE----TAALGERPKPPAP-VVLLAQTETGYGNLMKLSSCLYL-GK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 ++  S L E   EGLI LTGG  GP+ R         AE  L     ++  RLYV
Sbjct: 115  EGALPQVTPSEL-ERHAEGLICLTGGPDGPVGRHLREGQRAKAEALLGRLAAIYPGRLYV 173

Query: 185  NLQRHRGY-------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             LQRH G        +R  E   V+LAY   LPLVATN+  F   E YEAHD L+ +A  
Sbjct: 174  ELQRHPGEGGRLTEAERATEPGHVELAYAMGLPLVATNDVYFPKPEMYEAHDALICIAEG 233

Query: 238  TVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              V Q   R R+TP HY K+ +EMV++F+DLPEA+ENTVEIARRC+F             
Sbjct: 234  AYVDQVAPRRRLTPQHYFKSEAEMVALFADLPEAVENTVEIARRCAFKAAKR-------- 285

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                     +E  ELR +A  GL  RLA   I      +DY  RL FEL +I +M F GY
Sbjct: 286  PPILPRFADDEVEELRRQAKEGLAARLA--VIPHAAPVEDYEARLSFELGIIEQMGFPGY 343

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFI+W K N IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMP
Sbjct: 344  FLIVADFIKWGKANGIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMP 403

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL 
Sbjct: 404  DFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLS 463

Query: 477  KLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            K+IP +   PVS+Q  +AD+ R REA   +  V RLL+   ++EGL R+ASTHAAG+VIG
Sbjct: 464  KMIPVEGVKPVSIQKALADEPRLREAAKTEEVVKRLLDYGMQIEGLLRNASTHAAGVVIG 523

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            DRPL +LVP+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q ++D +   G  
Sbjct: 524  DRPLDELVPLYQDPRSDMPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNAIDLIRGTGRP 583

Query: 596  VD------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            +                   +  IP +D  TY L     T+ +FQ+ESSGM  AL  M+P
Sbjct: 584  LHMAADGRVLYDPPPGAENDIGHIPLEDKATYELYAQAKTVAVFQVESSGMMDALRRMKP 643

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             CIEDI+ALV+LYRPGP++NI VY   K+G   + S+HP IDP+LKETQG+I+YQEQVMQ
Sbjct: 644  TCIEDIVALVALYRPGPMENIPVYCEVKHGLRDLESLHPTIDPILKETQGIIVYQEQVMQ 703

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKF 756
            IAQ++ GY+L  AD+LRRAMGKKI EEM K++ +FI GA K +GI    A  +F+LL KF
Sbjct: 704  IAQVMGGYTLGGADLLRRAMGKKIAEEMAKERPKFIEGAKKTHGIDAKKAGEVFDLLEKF 763

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M  ++   +K+  + ++  +  I+ 
Sbjct: 764  ANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREVDKLGIRT 823

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            + P VN     F V D  + Y+L A+K VG    R I+EA  D+PF +L D   RV+ K+
Sbjct: 824  VAPCVNASLATFTVRDGAVVYALGALKNVGVEAMRLIVEARGDRPFATLFDMARRVELKR 883

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            + +R LE L  AGA D    +R ++ ++LD +  Y+  + +   +   ++F  E G    
Sbjct: 884  IGKRPLEMLARAGAFDALDRNRARVFEALDALVAYSAAIHEALNSSQVSLFG-EAGADIP 942

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-- 994
            +  L          R   E + +GFY SGHPLD Y   L++  +          +     
Sbjct: 943  EPRLPSRDDWLPVERLAQEHQAIGFYLSGHPLDDYMGALKRRNVTTLAALTDLAQRGPMV 1002

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +LA  V S+Q+KK+ KG+R  +V  S+P   YE   F
Sbjct: 1003 AKLAGAVSSRQEKKSAKGNRFAFVQLSDPTGLYECTVF 1040


>gi|258645443|ref|ZP_05732912.1| DNA polymerase III, alpha subunit [Dialister invisus DSM 15470]
 gi|260402794|gb|EEW96341.1| DNA polymerase III, alpha subunit [Dialister invisus DSM 15470]
          Length = 1145

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1034 (35%), Positives = 567/1034 (54%), Gaps = 32/1034 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YSL +G   +  ++  +    Q AIAITD   ++ A+   ++    GI+P
Sbjct: 3    SFVHLHSHTEYSLFDGTCRIKELVSYVKELGQTAIAITDHGVMYGAVYLYKECLKQGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +            K     +  ++LL     GY+ +I++ S+ +  +      
Sbjct: 63   IIGCEIYVTAGSRFIKDADKK---EKLAHLILLAENNTGYKNIIKICSKSWT-EGYYHKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R     L +   EG+I L+    G + +A      + A K +  +   FG D  ++ LQ 
Sbjct: 119  RADHDLLLKYH-EGVIALSACIGGELPQAVLKGDLEQARKIIRFYMDTFGKDNYFIELQN 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +       + +LA  + L LVATN+  +  ++D  + ++ + ++    +    R R
Sbjct: 178  HGLPEEAAVRPALAELAKEYGLGLVATNDFHYTRKKDAGSQEIKLCISTGNTMDDPGRFR 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + Y K+  EM ++  + P A+ENT  IA RC+         LP F   E +     
Sbjct: 238  FANEEFYCKSGEEMKALLGNFPGAIENTARIAERCNVTFTFGKHKLPSFTVPEGE----T 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR      L  R       +       ++RLD+EL VI +M F+ YFLIV DFIQ+
Sbjct: 294  AATYLRRLCEEALPERYPNYGNKE-------KERLDYELGVINQMGFADYFLIVMDFIQY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK + IP+GPGRGS AGS+ +Y L IT++DPLRF LLFERFLNP+R+SMPD D D C   
Sbjct: 347  AKTHGIPIGPGRGSAAGSIVSYLLHITEVDPLRFHLLFERFLNPERISMPDIDTDLCYRG 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R +VI Y+  KYG + VAQIITFG+L A+A +RDVGR L MP  +VDR+ K+IP+ P   
Sbjct: 407  RGQVIEYLAKKYGEDHVAQIITFGTLAARAVIRDVGRVLSMPLREVDRIAKMIPSGPGVT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +    +     F E   +D ++ RL++    LEGL R++ THAAG+VI   P+ + VP+ 
Sbjct: 467  L-RTTLERSKEFAELYASDSNIHRLIDHCLDLEGLSRNSGTHAAGVVICSEPVEEYVPIQ 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
               + +   TQ+     E+ GL+K D LGL+ LT++  +L+ +   RG+ +D+  +P  D
Sbjct: 526  L-TQDNFIQTQYEKDLDEELGLLKMDLLGLRNLTVIHDALEMIKTNRGIALDIEALPHVD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
              T  +L +  T+G+FQ ESSG    L  ++P+C ED+I +V+LYRPGP+ + +   + N
Sbjct: 585  ELTCKMLRSGDTVGVFQSESSGFTSLLMQLEPECFEDLIPMVALYRPGPLGSGMAEDFIN 644

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+GK  +   HP ++ +LKET G+I+YQEQVMQIA ++ G+SL +AD+LRRAMG K  E
Sbjct: 645  RKHGKTAVDYPHPSLETILKETYGIILYQEQVMQIASVMGGFSLGQADLLRRAMGHKEPE 704

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  Q++ F+ GA+   IS+ IA  +F+L+  FA YGFNKSH+  Y  I++QTA++K HY
Sbjct: 705  ILQAQRKLFVKGAAVQKISEEIANRVFDLMVHFAGYGFNKSHSVCYGWIAWQTAYLKAHY 764

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
              EF+AA MT    +  K+ ++  D R+  ++I  P VN     F V  + I + LA ++
Sbjct: 765  RPEFMAAMMTCYNGDRNKVSRYISDTRRAGVKIAAPDVNRSEAGFSVNGDTILFGLAGVQ 824

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG      I+ A   D  F S+ D   R+DSK LN R  ESL+  GA+D FGY+R QL+
Sbjct: 825  NVGEGIVNSIIGARKKDGAFKSISDLLERIDSKGLNSRACESLIRCGAMDSFGYNRRQLI 884

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
            + L      A     +R +   ++F  E    +  I        +++ + ++E+++LGFY
Sbjct: 885  EVLPQALNNASVTRSDRESGQLSLFGGE--IKAKTIVYPDLPDMSAAEKIDSERKLLGFY 942

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVA---TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             SGHPLD YK  ++          ++      G  + +  ++   +   T+KG+ +G+V+
Sbjct: 943  VSGHPLDSYKQQMKY--CSPIYSLLSDGMKYDGKMVSVGGIITRVKSMTTKKGAPMGYVS 1000

Query: 1020 FSEPAKEYEANFFP 1033
              +     EA  FP
Sbjct: 1001 LEDYEGAMEAVIFP 1014


>gi|220934350|ref|YP_002513249.1| DNA polymerase III, alpha subunit [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995660|gb|ACL72262.1| DNA polymerase III, alpha subunit [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1162

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1055 (40%), Positives = 623/1055 (59%), Gaps = 46/1055 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S  FVHL +H+ +SL++G + +  ++  +     PA+A+TD  NLF  ++F + A  
Sbjct: 1    MTTS--FVHLHLHTEFSLVDGLVRVEPLVQAVREAGMPAVAVTDQGNLFGMVKFYKAALK 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G    +                     +VLL    +GY+ L  L+SR Y   Q
Sbjct: 59   AGIKPIVGVDTWVS----------APQAGEAPSRLVLLAQDEDGYRNLTRLISRSYQEGQ 108

Query: 125  GKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                   +   W  +  + GLI L+GG  G I RA   +    AE+    ++ LF  R Y
Sbjct: 109  QSGDAPVLDRGWF-DGASRGLIALSGGREGEIGRALMGSQPSAAEELCEFWEGLFPGRFY 167

Query: 184  VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + + R     +       V LA +  LP+VATN+  FL+  D++AH+  + +    V+  
Sbjct: 168  LEIGRTGREGEEDHLHAAVDLAQSRSLPVVATNDVRFLAASDFDAHEARVCIHDGRVLDD 227

Query: 243  KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RPR  TP  YL+   EM ++F+D+PEALEN+VEIARRC+  L +   +LP +      
Sbjct: 228  PRRPRDYTPQQYLRTAEEMAALFADIPEALENSVEIARRCNVSLTLGKSVLPEYPVPAGM 287

Query: 302  DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYF 357
                  ++  R  +  GL+ RLA   +G        +  YR+RL+ EL+VI +M F GYF
Sbjct: 288  ----TTDDYFRKASREGLDARLAVILEGVTDNREAKERAYRERLEIELDVICQMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQWAK N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIQWAKDNAIPVGPGRGSGAGSLVAYALKITDLDPLLYDLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC ++RD VI YV  +YG E+V+QIIT G++ AKA +RDVGR L  PY  VDR+ K
Sbjct: 404  FDIDFCMEQRDRVIDYVAQRYGREKVSQIITHGTMAAKAVVRDVGRVLGHPYGFVDRIAK 463

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            LIP +    +    +  +   R     D  V  L+++++KLEG+ R+A  HA G+VI   
Sbjct: 464  LIPFEIGMTLDKA-LEQEEELRRLYEEDEEVSGLIDLARKLEGVARNAGKHAGGVVIAPT 522

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV--- 594
             L+   P+Y +      VT F+   +E  GL+KFDFLGL+TLT++  ++  + Q+     
Sbjct: 523  ELTDFSPLYCEPGGQSVVTHFDKDDVEAVGLVKFDFLGLRTLTIIDWAVRTIDQQRKAEG 582

Query: 595  --KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +D++ IP DD ET+ LL  + T  +FQLES GM++ ++ +QPD  EDI+ALV+LYRP
Sbjct: 583  QAPLDVNRIPLDDPETFGLLKRQETTAVFQLESRGMKELIKRLQPDVFEDIVALVALYRP 642

Query: 653  GPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GP+ + +   + NRK+G+ K+   HP ++P+LK T GVI+YQEQVMQIAQ+L+GY+L  A
Sbjct: 643  GPLQSGMVDDFINRKHGRAKVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLAGYTLGGA 702

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+E F++GA+  G+ +  A  IF+L+ KFA YGFNKSH+AAYA
Sbjct: 703  DMLRRAMGKKKPEEMAKQREIFLAGATGRGVQEATASYIFDLMEKFAGYGFNKSHSAAYA 762

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+K HYP  F++A ++ +MD+ +K+    ++ R   + ++PP +N     F V
Sbjct: 763  LLSYQTAWLKQHYPAAFMSAVLSADMDHTDKVVNLIEECRAMELHVVPPDINRSQHRFGV 822

Query: 831  GDNR-IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D R + Y L AIKGVG +  + +++A  A  PF SL+D C R DS+K+NRR LE+L+ A
Sbjct: 823  ADARTVIYGLGAIKGVGESAIQALIQAREAGGPFQSLDDLCVRADSQKINRRTLEALIRA 882

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GALD  G +R  L+ +L      A+   +N +   E++F       +  +  E+    + 
Sbjct: 883  GALDSIGPNRATLMANLPKALSRAEQHLRNESLGQEDLFGGPVTPGASDVDDEQLPEWDE 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-----------TIRGNNIRL 997
             +R   E+  LG Y +GHP+D ++  L+ +  K   + VA             +     +
Sbjct: 943  DLRLSAEKETLGLYLTGHPIDRFQAELKAIHSKRIADLVAEVGDQTPGEGRRRKEQQATV 1002

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +V++ + K T+ G RIG+VT  + +   E   F
Sbjct: 1003 GGLVINIRTKPTQTG-RIGFVTLDDRSGRIEVGLF 1036


>gi|229829648|ref|ZP_04455717.1| hypothetical protein GCWU000342_01745 [Shuttleworthia satelles DSM
            14600]
 gi|229791637|gb|EEP27751.1| hypothetical protein GCWU000342_01745 [Shuttleworthia satelles DSM
            14600]
          Length = 1175

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1048 (35%), Positives = 568/1048 (54%), Gaps = 40/1048 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ +SLL+G+  + + + ++      A AITD   ++  +EF ++  A GI+P
Sbjct: 2    SFVHLHSHTQFSLLDGSNKIRDYVSRVRELGMNAAAITDHGVMYGVIEFYKECHAQGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC++ +         N G         ++L+     GY  LI++VS  + +D      
Sbjct: 62   LIGCEVYVATGSRFDR-NSGSAGEDRYYHLILIAENNRGYANLIKIVSAGF-VDGYYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L+    EG+I  +   +G + +       + A++  L  +  FG    Y+ LQ 
Sbjct: 120  RVDREILERYH-EGIICTSACLAGQVQKYLQRGQYEAAKEAALWHENTFGHGNYYLELQD 178

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    D     ++++L+    +PLVATN+  +   ED+EAHDVL+ +     ++  DR R
Sbjct: 179  HGQAVDGRVVQELIRLSGETGIPLVATNDCHYTMAEDWEAHDVLLCIQTGKKITDTDRMR 238

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  EM  +F   PEA+ENT +IA RC   ++     +P +      D    
Sbjct: 239  YEGGQYYVKSEEEMRKLFPFAPEAIENTQKIADRCQVTIEFGVTKMPHYAVPRGYD---- 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L      GL+ R   GA          + +L +EL VI +M +  YFLIV D+I +
Sbjct: 295  AWTYLNKLCYEGLDRRYGDGA-------DALKPQLSYELGVIQKMGYVDYFLIVWDYINY 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+ +   VGPGRGS AGS+ AY   ITDIDP+RF L+FERFLNP+R++MPD D+DF  + 
Sbjct: 348  ARTHGCTVGPGRGSAAGSLVAYTTGITDIDPIRFQLIFERFLNPERVTMPDIDVDFDYEH 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R +VIRYV  KYG + V QIITFG+L  + A+RDVGR L +PY  VD + K +P +    
Sbjct: 408  RGDVIRYVTEKYGEDAVTQIITFGTLAPRNAIRDVGRVLDLPYGLVDTVAKSVPQELKIT 467

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   +++   D  V  L+++++KLEGL R++STHAAG+VI  + + + VP+ 
Sbjct: 468  ID-KALKANPELKKSYDEDEEVHNLIDMARKLEGLPRNSSTHAAGVVIAAKAMDEYVPLA 526

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV--KVDLSLIPFD 604
            R       VTQFNM  +E+ GL+K DFLGL+TL ++  ++           +D++ IP+D
Sbjct: 527  RG-TDGNVVTQFNMIEVEELGLLKMDFLGLRTLNVIADAVRDARANHPGLDLDINRIPYD 585

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D E Y ++      G+FQLES+GM+  ++ ++P  ++DIIA ++LYRPGP+D I  Y   
Sbjct: 586  DPEVYAMIGRGQCEGVFQLESAGMKSFMKELKPANLDDIIAGIALYRPGPMDFIPRYIKG 645

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K   + IV   P + P+L+ T G I+YQEQVMQI Q L+GYSL  AD++RRAM KK  +E
Sbjct: 646  KKNADAIVYDCPQLKPILESTYGCIVYQEQVMQIVQQLAGYSLGRADLVRRAMSKKHADE 705

Query: 725  MDKQKERFI--------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            M++++  FI        +G   NGIS+ +A  I++ +  FA+Y FNKSHAA YAVI+YQT
Sbjct: 706  MERERHNFIFGNREEGVAGCLANGISEAVASKIYDEMMDFANYAFNKSHAACYAVITYQT 765

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K +YP EF+AA MT  ++  +K+ ++    R+  I+++PP +N+    F   D  + 
Sbjct: 766  AYLKHYYPREFMAALMTTFINQSDKVSQYIAHCREIGIEVLPPDINSGDGRFVADDKGVR 825

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y + AIK VG      I+    A  PF +LEDF +RV  K +N+R +E+L+ AGA D   
Sbjct: 826  YGMYAIKSVGHPVIDAIVAERNARGPFKTLEDFLTRVSDKAVNKRSVENLIKAGACDSLD 885

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFE 953
             +R Q+      I       +K+      ++F  A E+G       +      +      
Sbjct: 886  GNRRQMTYIFPTIMDQVSSEKKHSMAGQMSLFDIAGEEGREDFAFKMPDVEEFDRQQLLA 945

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------ATIRGNNIRLAAMVVSKQ 1005
             E+ VLG Y SGHPL+    ++RK       E                 + LA M+ SK 
Sbjct: 946  FEKEVLGIYVSGHPLEDDLDLIRKNTSDNTLEFRLDQEKGQAPIQDKKQVVLAGMITSKN 1005

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + TR    +  +   +     E   FP
Sbjct: 1006 VRFTRNNQPMAILNLEDLYGTVELVVFP 1033


>gi|168178944|ref|ZP_02613608.1| DNA polymerase III, alpha subunit [Clostridium botulinum NCTC 2916]
 gi|226950824|ref|YP_002805915.1| DNA polymerase III DnaE [Clostridium botulinum A2 str. Kyoto]
 gi|182670052|gb|EDT82028.1| DNA polymerase III, alpha subunit [Clostridium botulinum NCTC 2916]
 gi|226842287|gb|ACO84953.1| DNA polymerase III, alpha subunit [Clostridium botulinum A2 str.
            Kyoto]
          Length = 1185

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1071 (34%), Positives = 597/1071 (55%), Gaps = 55/1071 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            EK P +V L  H+ YSLL+ +  +++++ +       +IAITD   ++  ++F ++A   
Sbjct: 8    EKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKEAIKQ 67

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PIIGC++ +  +         +        +VLLV    GY+ L+E+VS+   ++  
Sbjct: 68   GIKPIIGCEIYVASKSMYIKQQDKEN---ETHHLVLLVKNEIGYKNLMEIVSKAS-VEGF 123

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                R+   +L++  +EGLI L+    G +       + + AE+  L +K +F +  Y+ 
Sbjct: 124  YYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAEEVALIYKDIFKEGFYLE 182

Query: 186  LQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ H   ++      +V+++   ++PLVATN+  ++ +EDY++HD+L+ +     V +++
Sbjct: 183  LQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTVEEEN 242

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R  +   YLK+  EM   FS +PEALENTV+I+  C+F    H   LP+F  +E  D 
Sbjct: 243  RMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEEGVDP 302

Query: 304  QKEEENELRNKAVAG--LEVRLAQGAIAKGYHAQDYR-------------QRLDFELNVI 348
                   LR     G  L   + +  I K +   +               +RL++EL++I
Sbjct: 303  Y----EYLRKICFKGLFLRYEVLKDFIDKPFSIDEVLVYGNENKEAFDLIERLNYELSII 358

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M +  YFLIV DFI++A +  I  GPGRGS AGS+ AY L IT IDP++++L+FERFL
Sbjct: 359  KQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFL 418

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NPDR+SMPD D DFC +RR EVI YV  KYG E V+QIITFG++ A+A +RDVGRA+  P
Sbjct: 419  NPDRISMPDIDSDFCYERRGEVIDYVVEKYGKENVSQIITFGTMAARACIRDVGRAMNYP 478

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            Y++VDR+ K+IP      +  +A+  +   +E    +  V  L+++++ LEGL RH STH
Sbjct: 479  YAEVDRIAKMIPTVLNITI-NKALELNPELKEVYDNEERVRELIDVARALEGLPRHTSTH 537

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAG+VI  +PL   VP+ ++   +  VTQF M  +E+ GL+K DFLGL+TLT+++ ++  
Sbjct: 538  AAGVVIASQPLVNYVPLQKN--EESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVRI 595

Query: 589  LAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            + + + + +DL  I F+D E Y ++    T+G+FQLES+GM   ++ ++PD +EDIIA +
Sbjct: 596  IKENKEINIDLDNIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGI 655

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            SLYRPGP+  I  Y   KN    I      ++P+L  T   I+YQEQVMQI + L+GYS+
Sbjct: 656  SLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDLAGYSM 715

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADY 759
              +D++RRAM KK  + M++++  FI         G   NGI + +A ++F+ +  FA Y
Sbjct: 716  GRSDLVRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMMDFASY 775

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSHAAAYAV+ +QTA++  +YP EF+AA +     + +K+  +   A+   I+I+ P
Sbjct: 776  AFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGIEIIAP 835

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLN 878
            ++N    +F V DNRI + L A+K VG     +I+ +   K  F  L DF ++VD+  +N
Sbjct: 836  NINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVDTSIIN 895

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-- 936
            +R++ESL+ AGA DC    R ++L   + I    Q  ++N      N+F           
Sbjct: 896  KRLVESLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDNKESSM 955

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------- 987
             I        +     + E+ + G YFSGHPL+ Y+  L+        + +         
Sbjct: 956  DIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKESLEGNL 1015

Query: 988  -----ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 +   G+ + +  M+    +K TR    + ++   +     E   FP
Sbjct: 1016 VDTISSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066


>gi|197123916|ref|YP_002135867.1| DNA polymerase III subunit alpha [Anaeromyxobacter sp. K]
 gi|196173765|gb|ACG74738.1| DNA polymerase III, alpha subunit [Anaeromyxobacter sp. K]
          Length = 1210

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/1083 (36%), Positives = 607/1083 (56%), Gaps = 70/1083 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL +H+ YSLL+GA+ + ++L  + A    ++A+TD  NLF A++F +KA  AG++
Sbjct: 2    PDFVHLHLHTLYSLLDGAIRIKDLLKTVKAKGMSSVAVTDHGNLFGAVDFYKKAKEAGVK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G +  +          +          ++LL   AEG+  L  L S+ +  +     
Sbjct: 62   PILGMEAYVAGDKG-----RTDRSERIGRHLILLAKNAEGWANLRYLSSKAFT-EGFYYD 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
             RI    L++  ++GL+ LT   +G + R         A +    ++ +F     ++ +Q
Sbjct: 116  PRIDKQLLRD-HSKGLVGLTACLAGEVPRLARQGDMDGARRVAREYRDIFEPGSFFLEVQ 174

Query: 188  RHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   ++    +++ QL     +PLV T ++ ++S ++ +AH+VLM +A +       R 
Sbjct: 175  SNGMREQLDVNAKLAQLGRDEGIPLVGTADAHYVSRQEAKAHEVLMCIASNKTFQDPKRL 234

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  T   ++    EM +   D  EAL+NT+ IA  C+  L +    LP F   E      
Sbjct: 235  RHDTDGLFVAGPDEMAAALPDFREALDNTLRIAEMCNVELPLGKTFLPSFTLPEGM---- 290

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E++ +   A  GL+ R  +      +    YRQRL+ EL VI +M F GYFLIV DFI 
Sbjct: 291  SEDDYIDKLAREGLDRRFREIDGKYPHDRDVYRQRLEMELGVIKKMGFPGYFLIVQDFIN 350

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK+++IPVGPGRGSGAGS+ A++L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DFCQ+
Sbjct: 351  WAKEHHIPVGPGRGSGAGSIVAWSLRITDLDPLRWHLLFERFLNPERVSMPDFDVDFCQN 410

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI+YV+ KYG + V QIITFGSL+A++ +RDV R + +P+++ DR+ KL+P+    
Sbjct: 411  RRDEVIQYVRGKYGQDNVGQIITFGSLKARSVIRDVVRVMGLPFAEGDRIAKLVPDPVQG 470

Query: 486  PVSL--------QAIADDSRFREARLADPSVDRLLEI---------------SQKLEGLY 522
                          +  + R +E       + + ++                +  LEGL 
Sbjct: 471  KTPPLKELVFGSDKMPAEPRLKELHDKPAVISQWVDDKGVQNKVTTKDLLDIAMSLEGLN 530

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R A  HAAG+VI D+PL + VP Y+D +S++ V+QF  + +E AGL+KFDFLGLKTLT++
Sbjct: 531  RQAGLHAAGVVIADKPLWEYVPAYKDDKSEMLVSQFAKEEVEAAGLVKFDFLGLKTLTVI 590

Query: 583  QKSLDFLAQRGVKVDLS---LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
              +L  + +   ++       IP DD   Y L++   T G+FQ+ESSG  + +  M+P  
Sbjct: 591  DDALRMVKRNHPEMKDFAASDIPIDDPAVYELISRGDTGGVFQMESSGFTEMVVKMKPSR 650

Query: 640  IEDIIALVSLYRPGPID--------NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
             ED+IA  +LYRPGP+D         + VY +RK+G+EK+   H  ++ +L+ T GVI+Y
Sbjct: 651  FEDVIAAGALYRPGPLDQKLEDGRTMVDVYIDRKHGREKVQYPHQSLEKVLEPTYGVIVY 710

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVMQI+Q+L+GYSL +AD+LRRAMGKK  E M K++  F++GA  NG+ + +A  IF+
Sbjct: 711  QEQVMQISQVLAGYSLGQADLLRRAMGKKKAEVMAKERVGFLAGAVANGVDEKVAGGIFD 770

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            L+ KFA YGFNKSH+AAY +++ QTAW+K HYPVEF+AA ++ E  N +K+     +AR 
Sbjct: 771  LMEKFAAYGFNKSHSAAYGLLTVQTAWLKAHYPVEFMAALISSEASNTDKVVLHISEARA 830

Query: 812  FNIQIMPPSVNTPCVDFKV----------GDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
              ++++PP VN     F               RI + L A++GVG +  + I+EA A  P
Sbjct: 831  SQLEVLPPDVNESDAAFGAFPPGPESPKGSRGRIRFGLGAVRGVGESAVQAIVEARASGP 890

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F SL D   RVDSKK+N++VLE+LV +GALD  G  R QL   +D         + +R +
Sbjct: 891  FKSLFDLAGRVDSKKINKKVLEALVKSGALDFEGVPRWQLYFGIDAAISAGASAQADRAS 950

Query: 922  KHENIFAHEK-----------GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
               ++F                   D +           VR   E+  LGFY +GHPL  
Sbjct: 951  GQASLFGALAASAATEAKPRYPRPGDAVGEVTVEEWPERVRLAFEKEALGFYLTGHPLMG 1010

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEA 1029
            Y+  +R+              G+ + +  +V S +++  + KG+R G++T  +     E 
Sbjct: 1011 YEREVRRYASSTCAAVAQKRHGDKVTVVGVVASLRERMNKEKGTRFGFLTLEDLTGTTEV 1070

Query: 1030 NFF 1032
              +
Sbjct: 1071 ICW 1073


>gi|238897448|ref|YP_002923125.1| DNA polymerase III, alpha subunit [Candidatus Hamiltonella defensa
            5AT (Acyrthosiphon pisum)]
 gi|229465203|gb|ACQ66977.1| DNA polymerase III, alpha subunit [Candidatus Hamiltonella defensa
            5AT (Acyrthosiphon pisum)]
          Length = 1160

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1049 (40%), Positives = 601/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL VHS YS+++G   +  ++ K AA   PA+A+TD +N    ++F   A  
Sbjct: 1    MTD-PRFIHLSVHSDYSMIDGLTKIKPLVQKAAALGMPALALTDFSNFCGLVKFYGAAHK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG    +          Q          + LL    EGY  +  L+S  Y    
Sbjct: 60   VGIKPIIGADFYV----------QNPALENNFARLTLLARNQEGYHNITLLISAAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL +   EGLI+L+G   G + +     +    ++ L  ++  F D  Y+
Sbjct: 110  GSLGPVIDRHWLIK-HKEGLILLSGAKMGDLGQFILRENQSQIDQCLHFYQTHFPDNYYI 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        + +A  H +P+VATN+  F+   D++AH++ +A+     ++  
Sbjct: 169  ELTRTGRADEESYLHSAINIAEKHGIPVVATNHVRFMDPSDFDAHEIRVAINAGFTLADP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  ++++  +M  +FSD+PEAL N+VEIA+RC+  L++           +   
Sbjct: 229  KRPQNYSPQQFMRSEQDMCELFSDIPEALTNSVEIAKRCNLNLRLGEYFF-----PKYPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L  ++  GL  RL         +    + Y QRL  EL VI  M F GYFLI
Sbjct: 284  GKMSTEDFLIARSQEGLGKRLEFLFSDPEIRKQKREAYDQRLALELQVINEMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQWAK N+IPVGPGRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+S+PDFD
Sbjct: 344  VMEFIQWAKDNHIPVGPGRGSGAGSLVAYALQITDIDPLEFDLLFERFLNPERISLPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V + YG E V+QIITFG++ AKA +RDVGR L  PYS VDR+ KLI
Sbjct: 404  VDFCMEKRDAVIEHVADMYGRESVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRIAKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P D    +    +A +    +A  AD  V  LL++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PLDLGMTLEKAFVA-EPELTKAYEADEEVRSLLDMARKLEGVTRNAGKHAGGVVIAPTKM 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D +   PVTQF+   IE  GL+KFDFLGL+TLT++ K+++ + QR       
Sbjct: 523  TDFAPLYCDSQGQNPVTQFDKNDIEYVGLVKFDFLGLRTLTVIHKAVEMINQRIITQGAQ 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D+SLIP +D +++ +L    T  IFQLES GM+  ++ ++PDC EDIIALV+L+RPGP
Sbjct: 583  PIDISLIPLNDPKSFEVLQRSETTAIFQLESKGMKDLIKRLKPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVVYN-------NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V N               I   HP + P+L+ T G+I+YQEQVMQIAQ+LSGYSL
Sbjct: 643  LQSGMVDNFIDRKQGRETISYPDIEWQHPCLQPVLEPTYGIILYQEQVMQIAQVLSGYSL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             EAD+LRRAMGKK   EM KQ+  F +GA + GI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GEADILRRAMGKKDPVEMAKQRSIFENGAKEKGIDGQLAIKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN +KI     +  +  + ++PP +N+    
Sbjct: 763  AYALLSYQTLWLKTHYPAEFMAAVMTADMDNTDKIVGLVDECARMGLTMLPPDINSGFYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V    +I Y + AIKGVG      I+EA      F  L DFC+R   KKLNRR+LE L
Sbjct: 823  FHVNAQGKIVYGMGAIKGVGEGAIESILEARRQGGEFKDLFDFCARTAKKKLNRRILEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            +F+GALD  G  R  L+ +L N  K A+   K       ++F    +     + +  +  
Sbjct: 883  IFSGALDRLGPHRAALMHALQNAIKAAEQHAKAELTGQADMFGVLTQDPKKIEQSYAQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                    + E+  LG Y +GHP+  Y   +R   G    ++   T RG N+ +A  VVS
Sbjct: 943  PWQQQTVLDGERETLGLYLTGHPITQYLKEIRHYVGSSRLQDLSPTPRGKNVTVAGFVVS 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG     + +   +   F
Sbjct: 1003 AKVMTTKRGARIGLCKLDDRSAHLDIMLF 1031


>gi|116070442|ref|ZP_01467711.1| DNA polymerase III subunit alpha [Synechococcus sp. BL107]
 gi|116065847|gb|EAU71604.1| DNA polymerase III subunit alpha [Synechococcus sp. BL107]
          Length = 1172

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1053 (36%), Positives = 585/1053 (55%), Gaps = 41/1053 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L +++++      PAIA+TD   ++ A+E  +      ++P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPSMVERAKELGMPAIALTDHGVMYGAIELLKLCKGTDLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          +          +V+L   A GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPQPK----KEKRYHLVVLAKNAIGYRNLVKLTSISHLRGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 +    LQ   +EGLI+ T    G I +A      +VA      ++ +FGD  Y+ 
Sbjct: 118  FSRACVDKDLLQRY-SEGLIIATACLGGEIPQAILRGRPEVARDVARWYQNVFGDDFYLE 176

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR   S++V++A    + LVATN++ +L+++D EAHD L+ V    ++S + 
Sbjct: 177  IQDHGSPEDRIVNSEIVKIAEELNIQLVATNDAHYLTKQDVEAHDALLCVLTGKLISDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL------PEALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R T   Y+K   EM  +F+D        +A+ NT ++A +      +    +PRF   
Sbjct: 237  RLRYTGTEYIKTEEEMGRLFTDHLDPDVVQKAITNTAKVAEKVEDYDILGKYQMPRFPIP 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            +           LR   + GL  RL     A    A++Y  R+  EL ++ +M F  YFL
Sbjct: 297  DG----HTAVTYLREVTLQGLRDRLE--LKADDPIAENYADRMSHELEIMEQMGFPTYFL 350

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D+I++A++ +IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 351  VVWDYIRFAREQSIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDI 410

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KL
Sbjct: 411  DTDFCIERRCEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKL 470

Query: 479  IPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP     P  L+A+    + +  FRE  L DP+V   ++++ ++EG  +    HAAG+VI
Sbjct: 471  IPVVRGKPAKLKAMIGDESPNPEFREKYLGDPAVKHWVDMAMRIEGTNKTFGVHAAGVVI 530

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRG 593
               PL QLVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +    G
Sbjct: 531  AADPLDQLVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEVSSG 589

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             ++D   +P  D +T+ LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYRPG
Sbjct: 590  TRIDPDKLPPQDADTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPG 649

Query: 654  PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D   I  + NRK+G+E I   H +++P+L ET G+++YQEQ+M+IAQ L+GYSL +AD
Sbjct: 650  PLDAGLIPKFINRKHGREAIDFAHEILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQAD 709

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM K +  F+ GA + G+   ++  +F+ +  FA+Y FNKSH+ AY  
Sbjct: 710  LLRRAMGKKKVSEMQKHRGIFVEGAKERGVDVKVSDELFDQMVLFAEYCFNKSHSTAYGA 769

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K HYPV ++AA +T+     +K++++  +     I++MPP +N   +DF   
Sbjct: 770  VTYQTAYLKAHYPVAYMAALLTVNAGAADKVQRYISNCNAMGIEVMPPDLNASLIDFTPN 829

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             +RI + L+A++ +G    R ++E+  +  PF SL D C R+ S  LNRR LESL+  GA
Sbjct: 830  GDRILFGLSAVRNLGDGAIRRLIESRENDGPFRSLADLCDRLPSSVLNRRGLESLIHCGA 889

Query: 891  LDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--------ITL 940
            +D      +R QL+  LD +  +A    K+R +   N+F        D            
Sbjct: 890  MDAMDPNANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAAPAEDDGPTDLSMAPKA 949

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                    S +   E+ ++GFY S HPL    P  R +   G            +    M
Sbjct: 950  APVPDYPPSEKLRLEKDLVGFYLSDHPLKQLTPSSRLLAPIGLGSLEEQPDKAKVSAITM 1009

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +   +Q  TRKG R+  +   +     EA  FP
Sbjct: 1010 ITELRQVTTRKGDRMAILQLEDLTGSCEAVVFP 1042


>gi|169824700|ref|YP_001692311.1| DNA polymerase III subunit alpha [Finegoldia magna ATCC 29328]
 gi|167831505|dbj|BAG08421.1| DNA polymerase III alpha subunit [Finegoldia magna ATCC 29328]
          Length = 1161

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1050 (35%), Positives = 583/1050 (55%), Gaps = 44/1050 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G   +  +LDK    Q  AIAITD  ++F  ++F ++     I+P
Sbjct: 4    TFTHLHVHTEYSLLDGFSPIEKLLDKAKDLQMKAIAITDHGSMFGTVKFYKECKKRNIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++    +D+     + K        +VLL    +GY  L+++VS  Y ++      
Sbjct: 64   IIGCEIYTTNKDHKIKNPENKF----YNHLVLLAKNQQGYSNLMKIVSLGY-VEGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+  + L++  +EG+I L+    G +  +        A+      K ++G+  Y+ LQ H
Sbjct: 119  RVDKNTLRKY-SEGIIALSACLKGEVQESLIRYGYDKAKDVAKELKDIYGEDFYLELQNH 177

Query: 190  RGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +       + ++A   ++ LV TN+  ++ +EDY+ H++L+ +     + + ++   
Sbjct: 178  SSREDMVVMENIPKIAKELDIGLVCTNDVHYIEKEDYKIHNILICLQTGKTIEEDNKMSY 237

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + +L++  +M  +F + PEA+ENT +IA  C+  L+     LP F   +        
Sbjct: 238  IPGEFFLRSEEQMKDLFKEYPEAIENTKKIAEMCNVELEFGHLHLPYFAIPDGF----TN 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + L+     GLE R A          Q+ ++R ++EL+VI +M +  YFLIV DFI++A
Sbjct: 294  SSYLKKLVFDGLEKRFAND-----ERLQEAKERCEYELSVIEKMGYVDYFLIVWDFIRFA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K  +IPVGPGRGS AGS+ +Y L ITDI+PL + L+FERFLNP+R+SMPD DIDFC +RR
Sbjct: 349  KSQDIPVGPGRGSAAGSIISYCLEITDINPLDYDLIFERFLNPERVSMPDIDIDFCYERR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI YV NKYG ++VAQI+TFG++ A+ A+RDVGR L M +  VD   K +PN     +
Sbjct: 409  EEVIDYVVNKYGEDKVAQIVTFGTMAARNAIRDVGRVLAMDFKTVDDTAKKVPNLLNINI 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +++     FR+A   +  V +L+++++++EG+ RH STHAAG+VI   P+ + VP+  
Sbjct: 469  D-KSLEISPEFRKAYEENRDVKKLVDVARRVEGMPRHTSTHAAGVVISKLPIMEYVPL-- 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
             +  D  +TQFNM  +E+ GL+K DFLGL+TLT++   + ++ + + + V+   +  +D 
Sbjct: 526  AINKDAVITQFNMTELEELGLLKMDFLGLRTLTVISDCIKYIKKNKNIDVNFEDMNENDP 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +   + T   TLGIFQ ES GMR  L+ ++P   +D+IA  +L+RPGP++ I  Y + K+
Sbjct: 586  KVLSMFTVAQTLGIFQFESQGMRNFLKELKPTKFDDLIAANALFRPGPMNEIPTYIHNKH 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +E +  + PL++ +LK T G I+YQEQVMQI Q ++G+SL EAD LRRAM KK  + M+
Sbjct: 646  NEEDVEYLSPLLEDILKPTYGTIVYQEQVMQIVQKIAGFSLGEADNLRRAMSKKKMKVME 705

Query: 727  K------------QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
                              I GA + G+ + +A  I++L+  FA Y FNKSH+AAY++++ 
Sbjct: 706  DGRKEFIFGKEDENGNILIEGAIRRGVEEDVANKIYDLMIDFAKYAFNKSHSAAYSLVAM 765

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            +TAW+K +YPVEFLAA ++  M N  +I  + ++AR+  I+I PP +N     F V DN 
Sbjct: 766  RTAWLKYYYPVEFLAALISSVMGNTSQISLYIEEARRLEIEISPPDINYSLDKFDVKDNS 825

Query: 835  IYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGA 890
            I Y L AIK VGT      I+  + +  F S  DF  R+   D   +N+R +ESL+ AGA
Sbjct: 826  IIYGLKAIKNVGTNLIDQTIISRNENGKFKSFRDFVERIYAKDKSAINKRSIESLIKAGA 885

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSS 949
                G +R  L+    +I    Q   KN      N+F   E    +D+    +    + S
Sbjct: 886  FSSLGETRATLMLQYQSIIDSVQSGLKNNVPGQSNLFDMFESNEENDRDDFTRREEFDKS 945

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI------RGNNIRLAAMVVS 1003
                 E+ VLG Y S HPL  Y  I+ +       +            G  +++  ++ S
Sbjct: 946  ELLRMEKEVLGIYLSDHPLRAYSSIIGQYSNFSTGDLEDDAYNEKNFDGKRVKVVGIIES 1005

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +K T+    + +V F +     E   FP
Sbjct: 1006 INKKFTKNQKIMEFVKFEDLYGTMELIVFP 1035


>gi|322807697|emb|CBZ05272.1| DNA polymerase III alpha subunit [Clostridium botulinum H04402 065]
          Length = 1185

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1071 (34%), Positives = 597/1071 (55%), Gaps = 55/1071 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            EK P +V L  H+ YSLL+ +  +++++ +       +IAITD   ++  ++F ++A   
Sbjct: 8    EKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKEAIKQ 67

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PIIGC++ +  +         +        +VLLV    GY+ L+E+VS+   ++  
Sbjct: 68   GIKPIIGCEIYVASKSMYIKQQDKEN---ETHHLVLLVKNEIGYKNLMEIVSKAS-VEGF 123

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                R+   +L++  +EGLI L+    G +       + + AE+  L +K +F +  Y+ 
Sbjct: 124  YYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAEEVALIYKDIFKEGFYLE 182

Query: 186  LQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ H   ++      +V+++   ++PLVATN+  ++ +EDY++HD+L+ +     V +++
Sbjct: 183  LQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTVEEEN 242

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R  +   YLK+  EM   FS +PEALENTV+I+  C+F    H   LP+F  +E  D 
Sbjct: 243  RMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEEGVDP 302

Query: 304  QKEEENELRNKAVAG--LEVRLAQGAIAKGYHAQDYR-------------QRLDFELNVI 348
                   LR     G  L   + +  I K +   +               +RL++EL++I
Sbjct: 303  Y----EYLRKICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNYELSII 358

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M +  YFLIV DFI++A +  I  GPGRGS AGS+ AY L IT IDP++++L+FERFL
Sbjct: 359  KQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFL 418

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NPDR+SMPD D DFC +RR EVI YV  KYG E V+QIITFG++ A+A +RDVGRA+  P
Sbjct: 419  NPDRISMPDIDSDFCYERRGEVIDYVVEKYGKENVSQIITFGTMAARACIRDVGRAMNYP 478

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            Y++VDR+ K+IP      +  +A+  +   +E    +  V  L+++++ LEGL RH STH
Sbjct: 479  YAEVDRIAKMIPTVLNITI-NKALELNPELKEVYDNEERVRELIDVARALEGLPRHTSTH 537

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAG+VI  +PL   VP+ ++   +  VTQF M  +E+ GL+K DFLGL+TLT+++ ++  
Sbjct: 538  AAGVVIASQPLVNYVPLQKN--EESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVRI 595

Query: 589  LAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            + + + + +DL  I F+D E Y ++    T+G+FQLES+GM   ++ ++PD +EDIIA +
Sbjct: 596  IKENKEINIDLDNIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGI 655

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            SLYRPGP+  I  Y   KN    I      ++P+L  T   I+YQEQVMQI + L+GYS+
Sbjct: 656  SLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDLAGYSM 715

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADY 759
              +D++RRAM KK  + M++++  FI         G   NGI + +A ++F+ +  FA Y
Sbjct: 716  GRSDLVRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMMDFASY 775

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSHAAAYAV+ +QTA++  +YP EF+AA +     + +K+  +   A+   I+I+ P
Sbjct: 776  AFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGIEIIAP 835

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLN 878
            ++N    +F V DNRI + L A+K VG     +I+ +   K  F  L DF ++VD+  +N
Sbjct: 836  NINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVDTSIIN 895

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-- 936
            +R++ESL+ AGA DC    R ++L   + I    Q  ++N      N+F           
Sbjct: 896  KRLVESLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDNKESSM 955

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------- 987
             I        +     + E+ + G YFSGHPL+ Y+  L+        + +         
Sbjct: 956  DIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKESLEGNL 1015

Query: 988  -----ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 +   G+ + +  M+    +K TR    + ++   +     E   FP
Sbjct: 1016 VDTISSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066


>gi|114562463|ref|YP_749976.1| DNA polymerase III subunit alpha [Shewanella frigidimarina NCIMB 400]
 gi|114333756|gb|ABI71138.1| DNA polymerase III, alpha subunit [Shewanella frigidimarina NCIMB
            400]
          Length = 1158

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1047 (39%), Positives = 595/1047 (56%), Gaps = 37/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS YS+ +G   +  I+         AIA+TD NN    ++F      
Sbjct: 1    MSD-PRFVHLRVHSDYSMSDGVAKVKPIIAAAENQGMAAIALTDQNNFCGLVKFYGACNG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q         ++ ++    EGYQ L +L+S  YL   
Sbjct: 60   AGIKPIIGADFWV----------QTPGFEKEFCALTIIAMNNEGYQNLTQLISEAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                V I   WL +  + GLI+++G   G + +A    +    E  +  +++ F DR Y+
Sbjct: 110  VDNRVVIDQDWLVKYNS-GLIIISGAKDGDVGKALLKGNQNQVESLIAFYQQHFEDRYYL 168

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    ++       V+LA    LP+VATN  +FL ++D+EAH++ +A+     +   
Sbjct: 169  ELIRTGRAHEERYLHMAVELASIKGLPVVATNQVVFLKQDDFEAHEIRVAIHDGFTLVDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   YL+   EM+++F+D+P A++N+VEIA+RC+  ++++              
Sbjct: 229  RRPKTYSDQQYLRTEDEMIALFADIPSAIQNSVEIAKRCNVTIRLNEYF-----LPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L N +V GLE RL          A+   +Y +RL+ EL VI +M F GYFLI
Sbjct: 284  GDLSIEDFLVNVSVKGLEERLEFLFPNPQVRAEKRGEYDERLEIELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  V+RL KLI
Sbjct: 404  VDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVERLTKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   +    EA   D  V  L+++ ++LEG+ R+A  HA G+VI    +
Sbjct: 464  PAEPGMTL-AKAFEVEPALPEAYDGDEDVKELIDMCRRLEGVTRNAGKHAGGVVIAPTRI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPLYCDAEGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPRLIKEGKD 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP  D   + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PVSIEAIPLADPACFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIERKHGREEVSYPDAEYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRGTFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP VN     
Sbjct: 763  AYALVSYQTLWLKTHFPSQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFK 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F V D+  I Y + AIKGVG      I+EA  + PF  L DFC+R+D KKLN+RV+E L+
Sbjct: 823  FTVDDDLNIVYGIGAIKGVGEGPVDSILEARKNGPFTDLFDFCARIDLKKLNKRVIEKLI 882

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945
             AGALD  G  R  ++ +L      A    K       ++F        D K      + 
Sbjct: 883  LAGALDTLGPHRASMMATLPQAISAAAQHAKAEATGQNDMFGLLNSEPEDSKQNFVHCTP 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                +  E E+  LG Y +GHP++ Y   L++      ++   T RG  ++ A +VV+ +
Sbjct: 943  WPDKIWLEGERETLGLYLTGHPINQYLKELKQYTNGRLKDIHPTERGKTVKAAGLVVATR 1002

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++GS++G VT  + +   E   F
Sbjct: 1003 VMITKRGSKMGLVTLDDKSARLEVMLF 1029


>gi|109897589|ref|YP_660844.1| DNA polymerase III, alpha subunit [Pseudoalteromonas atlantica T6c]
 gi|109699870|gb|ABG39790.1| DNA polymerase III, alpha subunit [Pseudoalteromonas atlantica T6c]
          Length = 1155

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1039 (39%), Positives = 604/1039 (58%), Gaps = 33/1039 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS YS+L+G   +  ++  + +   PA+A+TD  N+   ++F ++A + GI+PI
Sbjct: 6    FVHLRVHSDYSMLDGLNKVKPLIAHVKSLNMPAVALTDQMNMCGLVKFYEQAHSNGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    +          Q       V  + LL +  +GY+ +  L+S+ YL    +    
Sbjct: 66   IGTDFWV----------QSDALEDHVFRLTLLAANNKGYKNITLLISKAYLRGSVQDKAV 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL E  +EG+I+L+GG  G +       +  +AEK    +++ F DR Y+ L R  
Sbjct: 116  IDQEWLVE-HSEGVIILSGGRMGDLGVYLTKGNVGLAEKATAFYQQHFPDRFYLELTRTG 174

Query: 191  GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
               +     + V+ A  H+LP+VATN   F+S +++EAH++ +A+     ++   RP+  
Sbjct: 175  RLGEEDYIHRAVEWAGQHDLPVVATNEVCFISPDNFEAHEIRVAIHDGYTLNDPRRPKLY 234

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   Y++   EM  +F+D+P+A+ENTVEIA+RC+  + +       +   +         
Sbjct: 235  SEQQYMRTSEEMCELFADIPQAIENTVEIAKRCNVSVLLGT-----YFLPDFPTGDMSIA 289

Query: 309  NELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            + L   +  GLE RLA        +     +Y +RL  EL VI +M F GYFLIV +FIQ
Sbjct: 290  DFLVKVSEEGLEKRLAFLFPDEEERLAKRPEYDERLKIELVVINQMGFPGYFLIVMEFIQ 349

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            W+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D
Sbjct: 350  WSKDNGIPVGPGRGSGAGSLVAYALGITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMD 409

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP  P  
Sbjct: 410  RRDEVIDHVAEMYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPPTPGM 469

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             ++ +A  ++ R  E    D  V  L+++++ LEG+ R+A  HA G+VI    ++   P+
Sbjct: 470  TLT-KAFEEEPRLPELYAYDEEVKDLIDMARILEGVTRNAGKHAGGVVIAPDKITDFAPL 528

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
            Y D     PVTQF+   +E AGL+KFDFLGL+TLT++Q ++D ++  +GV +D+  IP D
Sbjct: 529  YCDDEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMISAGKGVDIDILAIPMD 588

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV---- 660
            D +++ LL    T  +FQLES GM+  ++ ++PD  EDIIALV+L+RPGP+ + +V    
Sbjct: 589  DKKSFKLLQRSETTAVFQLESRGMKDLIKRLRPDSFEDIIALVALFRPGPLQSGMVDNFI 648

Query: 661  ---YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
               +             H  +  +L+ T G+I+YQEQVMQIAQ +SGYSL  AD+LRRAM
Sbjct: 649  DRKHGREAISYPDATYQHECLKEILEPTYGIILYQEQVMQIAQEMSGYSLGGADLLRRAM 708

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM KQ+E F +GA  N I   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT 
Sbjct: 709  GKKKPEEMAKQRESFETGAKNNNIDPELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 768

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIY 836
            W+KTHYP EF+AA M+ +MDN +KI     + ++  I ++PP VN     F V  + RI 
Sbjct: 769  WLKTHYPAEFMAAVMSADMDNTDKIVTLVDECQRMGITLLPPDVNAGSYKFTVDSEGRIV 828

Query: 837  YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y + AIKGVG      I+EA  + + F  L DFC++VD+K++N+RVLE LV+AGALD  G
Sbjct: 829  YGIGAIKGVGEGPIAAIIEARENHEKFTDLFDFCAKVDTKRINKRVLEKLVYAGALDNLG 888

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFEN 954
              R  ++ +L      A    K   +   ++F          +    K       V  + 
Sbjct: 889  PHRASIMATLPEAISAADQHAKAEAHGQSDMFGLLTTEPEQVEQAFAKVPHWAEKVWLDG 948

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  LG Y +GHP++ Y   ++        +   T +        +V+  +    ++G R
Sbjct: 949  EKVTLGLYLTGHPINQYAQEIKHYCTGRLIDLKPTHKDVVSYAVGLVIGVRVMTNKRGRR 1008

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
             G VT  + +   +  FFP
Sbjct: 1009 WGIVTLDDKSARIDVRFFP 1027


>gi|216264846|ref|ZP_03436838.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 156a]
 gi|215981319|gb|EEC22126.1| DNA polymerase III subunit alpha [Borrelia burgdorferi 156a]
          Length = 1161

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1035 (37%), Positives = 603/1035 (58%), Gaps = 23/1035 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  
Sbjct: 15   MSFRSRFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 74

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PIIG +  +                     ++LL     GY+ L++L S  YL + 
Sbjct: 75   SGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-EG 131

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+
Sbjct: 132  FYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYL 190

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   D+     ++V  +    +PL A N+S +++ ED  A D+++ +      S +
Sbjct: 191  ELQRHGIKDQDIVNERLVNYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDE 250

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKECD 301
            +R ++ T + Y+K++ EM  +F+DLPEALENTV I  +   F +    PILP +      
Sbjct: 251  NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVEF 310

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            +        L +  + GL+                 + R  +EL+VI  M F GYFLIV 
Sbjct: 311  N---TLGEYLEHLTLEGLK-------FRYKNLTSKIKDRAFYELSVIIGMGFEGYFLIVW 360

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID
Sbjct: 361  DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 420

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP+
Sbjct: 421  FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 480

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P   VSL+ + DD+  +E   + P    L+  +  LEG+ RHASTHAAGIVI   PL+ 
Sbjct: 481  GP--KVSLKEVLDDNSLKEYFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTD 538

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
             VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  I
Sbjct: 539  YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKNI 598

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P +D +T+++L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  +
Sbjct: 599  PDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQF 658

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK 
Sbjct: 659  IAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKK 718

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            ++EM++ K  F+ GA + G  K IA  IFELL  F+ YGFNKSHAAAY++I+YQTA++K 
Sbjct: 719  EDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLKA 778

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L  
Sbjct: 779  NYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLNG 838

Query: 842  IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK +G      I++    +  + S EDF  RVD K +N++ LES + +G  D    +R  
Sbjct: 839  IKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRKT 898

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQRV 958
            L ++LD + +     + N+     ++F   +           + F   + S     E+ +
Sbjct: 899  LFENLDRLIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGFEKEL 958

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGW 1017
            LGFY SGHPLD YK  +           +A  + + ++ + ++ S +  +T++ + ++ +
Sbjct: 959  LGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNAKMAF 1018

Query: 1018 VTFSEPAKEYEANFF 1032
                +     +   F
Sbjct: 1019 GVIEDFKGAIDIVVF 1033


>gi|88798272|ref|ZP_01113858.1| DNA polymerase III subunit alpha [Reinekea sp. MED297]
 gi|88779048|gb|EAR10237.1| DNA polymerase III subunit alpha [Reinekea sp. MED297]
          Length = 1167

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1052 (38%), Positives = 598/1052 (56%), Gaps = 45/1052 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++H+ YSL +G + + +++++ +  + PA+A+TD +N F  ++F      AGI+P
Sbjct: 3    SFVHLRLHTEYSLTDGIVRIKDLINRASELEFPAVAVTDISNFFGLVKFYNGCLGAGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G  L I+  D+                + +L     GY+ L EL+S  +  +Q     
Sbjct: 63   ILGADLYIENPDD----------DNAPFLMTVLAMNETGYRNLTELISDGFQKNQKHDRA 112

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               + WL E   EGLI+L+G   G +  A    ++  AE  +  +K +FGDR Y+ LQR 
Sbjct: 113  ITRVEWLAEK-NEGLIVLSGARLGDVGYALLRGNNDRAESLVQHWKSVFGDRYYLELQRT 171

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
                D       V L   + +P+VATN+ +FL+ ED+EAH+  + +     +    RP R
Sbjct: 172  GRDQDESLVQGAVALGRKYGVPVVATNDVMFLTREDFEAHETRVCINDGVTIDDPKRPRR 231

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + YLK+  EM  +F D+P+ALEN+V IA+RCS  +Q+    LP +   E        
Sbjct: 232  YAEEQYLKSSDEMTELFRDIPQALENSVLIAQRCSATVQLGKYFLPDYPVPEG----LTM 287

Query: 308  ENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++  R  +  GLE RLA              Q Y  RL FEL++I +M F GYFLIV DF
Sbjct: 288  DDYFRQLSAEGLERRLAVALDPKQPDFEERRQQYFDRLKFELDIIIQMGFPGYFLIVMDF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+W K N +PVGPGRGSGAGS+ A+ L ITD+DP+ + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IRWGKNNGVPVGPGRGSGAGSLVAWVLDITDLDPIEYDLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + R+ VI YV   YG + V+QI+TFG++ AKA +RDV R    P+   D+L KLIP DP
Sbjct: 408  MEGRERVINYVAETYGRQAVSQIVTFGTMAAKAVVRDVARVQGKPFGLADKLSKLIPPDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               ++ +A+ + +  +E    D     + E++ KLEG+ R    HA G+VI    L+   
Sbjct: 468  GMKLT-KALDEVAELKEFLEEDEEAAEIWEMALKLEGITRQTGKHAGGVVIAPTKLTDFS 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDL 598
            P+  +      VTQ++   +E AGL+KFDFLGL+TLT++  +L  +  R        +D+
Sbjct: 527  PLLCEEDGTGLVTQYDKNDVEAAGLVKFDFLGLRTLTIIDWALKIINPRLEAQGKEPIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD  ++ LL    T  +FQLES GM+  +  +QPDC+ED+IALV+L+RPGP+ + 
Sbjct: 587  AHIPLDDAASFELLQQAKTTAVFQLESRGMKDLVMRLQPDCLEDMIALVALFRPGPLQSG 646

Query: 659  VVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V N                   H  ++P+L  T G+I+YQEQVMQIAQ+L+GY+L  AD
Sbjct: 647  MVDNFINRKHGREELSYPDSQYQHEWLEPILAPTYGIILYQEQVMQIAQVLAGYTLGGAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  MLRRAMGKKKPEEMAKQRAIFEEGAIGKGVDGNLAMRIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTHYP  F+AA+M+ E+ N EK+  F ++ RQ NI ++PP VN     F V 
Sbjct: 767  VSYQTLWLKTHYPAAFMAATMSSELQNTEKVVIFVEECRQINIDVLPPDVNAGDYYFTVN 826

Query: 832  D-NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            + ++I Y L AIKGVG      I+    +  PF  L DFC R+D KK+N+R +E+L+ AG
Sbjct: 827  EQDQIIYGLGAIKGVGEGPVEAIVNARRSGGPFKDLFDFCERIDPKKVNKRSIEALIKAG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVEN 947
            ALD  G +R  +L++  +  K A+    N      ++F     + T              
Sbjct: 887  ALDSIGPNRQLMLEATPDAVKTAEQSAANAAAGMMDMFGAIEAEETGDVYEPYAHVREST 946

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK-------GYEESVATIRGNNIRLAAM 1000
              +R   E+  LG Y +GHP+D ++  +R++            EE     RGN   LA +
Sbjct: 947  LKIRLAGEKDTLGLYLTGHPIDEFENEVRQVATLRLGELDGSAEELKRARRGNIKTLAGL 1006

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V+  + ++T++G  +  VT  +     E   F
Sbjct: 1007 VMGVRTRQTQRGDTMAIVTLDDRTGRIEMTLF 1038


>gi|192360327|ref|YP_001981623.1| DNA polymerase III subunit alpha [Cellvibrio japonicus Ueda107]
 gi|190686492|gb|ACE84170.1| DNA polymerase III, alpha subunit [Cellvibrio japonicus Ueda107]
          Length = 1177

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/1063 (37%), Positives = 601/1063 (56%), Gaps = 54/1063 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  + +FVHL++H+ +SL +  + +  ++ ++A    PA AITD  N +  ++F + A  
Sbjct: 1    MP-AANFVHLRLHTEFSLSDSLVRIKPLIKRVAELNMPACAITDQTNFYGLIKFYKAAQG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI G    +   +                 + LL    +GY+ +IEL+SR +   Q
Sbjct: 60   TGIKPIAGSDFLMASHETDGKPTL----------LTLLAMNNQGYKNIIELISRAWRSGQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I   W+ E  +EG+I L+GG  G +  A        A++ L  + + F +R Y+
Sbjct: 110  QQGIAYIQREWISEY-SEGVIALSGGKFGDVGMALLGGRQAQAQELLQGWMRDFPNRFYL 168

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR     D       V LA   + P+VATN+  FL   ++E H+  + +     +   
Sbjct: 169  ELQRTGRENDENYLHAAVDLAAQMQCPVVATNDVRFLKTSEFEVHEARVCIGEGRTLDDP 228

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R +   YL++  EMV +FSD+PEA+ N+VEIA+RC+  +Q+    LP +   E   
Sbjct: 229  RRERRYSDQQYLRSAEEMVELFSDIPEAIANSVEIAKRCTITIQMGKYFLPEYPVPEG-- 286

Query: 303  IQKEEENELRNKAVAGLEVRLAQGA----IAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                E    R  ++ GL+ RL +             + Y +RL+FEL++I +M F GYFL
Sbjct: 287  --LTEAEFFRKISLEGLDWRLEKILDKSLPDYAERRKVYEERLNFELDIIIQMGFPGYFL 344

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFIQWAK ++IPVGPGRGSGAGS+ AYAL ITD+DPL++ LLFERFLNP+R+SMPDF
Sbjct: 345  IVMDFIQWAKDHDIPVGPGRGSGAGSLVAYALKITDLDPLQYDLLFERFLNPERVSMPDF 404

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFC D RD+VI YV   YG + V+QIITFG++ AKA +RDV R     Y   D+L K+
Sbjct: 405  DIDFCMDNRDKVIAYVAENYGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKM 464

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP  P   +  QA+ ++ + +E    D     + E++ +LEGL R+   HA G+VI    
Sbjct: 465  IPPTPGMTL-AQALEEEPQLKEFLAQDGDAQEIWEMAVQLEGLTRNVGKHAGGVVIAPTK 523

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-- 596
            L+   P++ D      VTQF+   +E+AGL+KFDFLGL+TLT++  +   + ++  K   
Sbjct: 524  LTDFAPLFCDETGSGLVTQFDKGDVEEAGLVKFDFLGLRTLTIIDWARIMIDKQRRKRGE 583

Query: 597  ---DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
               D++ IP DD +T+ LL    T  +FQLES GM+  ++ +QPD IED+IALV+L+RPG
Sbjct: 584  SPLDINAIPLDDAKTFGLLKRAETTAVFQLESRGMKDLIKRLQPDNIEDLIALVALFRPG 643

Query: 654  PIDNIV--VYNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+++ +   + NRK+G+ ++        H  + P+L+ T GVI+YQEQVMQIAQ+L+GY+
Sbjct: 644  PLESGMVDDFINRKHGRAEVAYPDAKFQHASLKPVLEPTYGVIVYQEQVMQIAQVLAGYT 703

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F  GA K G+   +A+ IF+L+ KFA YGFNKSH+
Sbjct: 704  LGGADMLRRAMGKKKPEEMAKQRSVFEEGAKKQGVDPDLAIKIFDLVEKFAGYGFNKSHS 763

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQTAW+K HYP  F+AA+M+ +MD  +K+  F ++ R   ++++PP VN+   
Sbjct: 764  AAYAIVSYQTAWLKAHYPAHFMAATMSSDMDKTDKVVTFIEECRTMKLKLLPPDVNSGEF 823

Query: 827  DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLES 884
             F V D  RI Y L AIKG+G      I+ A  D  PF  L DFC+RVD++K+N+R LE+
Sbjct: 824  HFTVDDAGRIIYGLGAIKGLGEGPVESIIAARNDGGPFKDLFDFCARVDARKVNKRALEA 883

Query: 885  LVFAGALDCFG-----------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---- 929
            ++ +GA D  G           + R  +  ++    K A+    N      ++F      
Sbjct: 884  IIRSGAADSLGPTYDTPEYNIDHDRAVMFSAMAEAVKTAEQATANSNAGMMDLFGAVMAS 943

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
            E+ T        +        R   E+  LG Y +GHP+D Y+  L              
Sbjct: 944  EESTNDVYADFRRVRTWTIKERLHAEKETLGLYLTGHPIDEYESELSHFVSSRIANLKPE 1003

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   +A +++S++  KT++G  +  +T  +     +   F
Sbjct: 1004 KGNQ--TIAGLIISQRIVKTKRGDNMAILTLDDRTGRMDITLF 1044


>gi|113970961|ref|YP_734754.1| DNA polymerase III subunit alpha [Shewanella sp. MR-4]
 gi|113885645|gb|ABI39697.1| DNA polymerase III, alpha subunit [Shewanella sp. MR-4]
          Length = 1158

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1047 (40%), Positives = 602/1047 (57%), Gaps = 37/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NNL   ++F      
Sbjct: 1    MSD-PRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q         ++ ++    +GYQ L +++S+ YL   
Sbjct: 60   AGIKPIIGADFWM----------QVPGFDDEFCALTIIAMNNDGYQNLTQIISQAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                V I   WL     EG+++L+GG  G + +A    ++   E     +++ F  R Y+
Sbjct: 110  VAGRVVIDQEWLVTY-NEGILLLSGGKEGDVGKALLKGNNTQVESLCEFYQQHFEGRYYL 168

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R     V LA    +P+VATN  +FL  ED+EAH++ +A+     ++  
Sbjct: 169  ELLRTGRTDEERYLHMAVGLAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTLADP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   YL++  EM  +F+D+P ALENTVEIA+RC+  ++++              
Sbjct: 229  RRPKKYSEQQYLRSEEEMCELFADIPAALENTVEIAKRCNVTIRLYEYF-----LPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L + +  GLE RL          A+   +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMSIEDYLVDCSKKGLEERLEFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   +   +E+  AD  V  L+++ +KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPEPGMTL-AKAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +          
Sbjct: 523  TDFSPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PVRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRGTFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + I+PP VN     
Sbjct: 763  AYALVSYQTLWLKTHFPSQFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKGLFK 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+
Sbjct: 823  FTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFKDLFDFCARIDLKKLNKRVIEKLI 882

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945
             AGALD  G  R  ++ +L      A    K       ++F        D K    + + 
Sbjct: 883  CAGALDALGPHRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVECTP 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ +
Sbjct: 943  WPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATR 1002

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++GS++G +T  + +   E   F
Sbjct: 1003 VMLTKRGSKMGLLTLDDKSARLEVMLF 1029


>gi|114048185|ref|YP_738735.1| DNA polymerase III subunit alpha [Shewanella sp. MR-7]
 gi|113889627|gb|ABI43678.1| DNA polymerase III, alpha subunit [Shewanella sp. MR-7]
          Length = 1158

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1047 (40%), Positives = 602/1047 (57%), Gaps = 37/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NNL   ++F      
Sbjct: 1    MSD-PRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q         ++ ++    +GYQ L +++S+ YL   
Sbjct: 60   AGIKPIIGADFWM----------QVPGFDDEFCALTIIAMNNDGYQNLTQIISQAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                V I   WL     EG+++L+GG  G + +A    ++   E     +++ F  R Y+
Sbjct: 110  VAGRVVIDQEWLVTY-NEGILLLSGGKEGDVGKALLKGNNTQVESLCEFYQQHFEGRYYL 168

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R     V LA    +P+VATN  +FL  ED+EAH++ +A+     ++  
Sbjct: 169  ELLRTGRPDEERYLHMAVGLAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTLADP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   YL++  EM  +F+D+P ALENTVEIA+RC+  ++++              
Sbjct: 229  RRPKKYSEQQYLRSEEEMCELFADIPAALENTVEIAKRCNVTIRLYEYF-----LPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L + +  GLE RL          A+   +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMSIEDFLVDCSKKGLEERLEFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   +   +E+  AD  V  L+++ +KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPEPGMTL-AKAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +          
Sbjct: 523  TDFSPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PVRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRGTFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + I+PP VN     
Sbjct: 763  AYALVSYQTLWLKTHFPSQFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKGLFK 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+
Sbjct: 823  FTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFKDLFDFCARIDLKKLNKRVIEKLI 882

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945
             AGALD  G  R  ++ +L      A    K       ++F        D K    + + 
Sbjct: 883  CAGALDALGPHRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVECTP 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ +
Sbjct: 943  WPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATR 1002

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++GS++G +T  + +   E   F
Sbjct: 1003 VMLTKRGSKMGLLTLDDKSARLEVMLF 1029


>gi|123968448|ref|YP_001009306.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str.
            AS9601]
 gi|123198558|gb|ABM70199.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str.
            AS9601]
          Length = 1165

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1044 (36%), Positives = 598/1044 (57%), Gaps = 28/1044 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  ++ I+++       +IA+TD   ++  L+  +K    GI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQISKIVERACDLGMDSIALTDHGVMYGVLDLVKKCKEKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          +          +V+L     GY+ L++L +  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPQPK----KEKRYHLVVLAKNYTGYKNLVKLTTISHLNGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I  S L +  ++GLI+ T    G I +A       VAE   L +KKLF D  Y+ 
Sbjct: 118  FSRPCIDKSLLSKY-SDGLIVSTACLGGEIPQAILKGRLDVAEDIALWYKKLFADDFYLE 176

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    +++++   H++ ++ATN++ +LS  D EAHD L+ V    ++S + 
Sbjct: 177  IQDHGSIEDRIVNVELIKIGKKHQIKVIATNDAHYLSSMDVEAHDALLCVLTGKLISDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R R T   Y+K+ +EM+ +F D  +  ++ + V      S  ++V        + K   +
Sbjct: 237  RLRYTGTEYIKSENEMLELFKDHIDDKSIIDAVNNTVEISQKVEVFDLFGNYRMPKFPLN 296

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              K+  + L+  +  GL  RL +  +      + Y++RL  EL +I  M F  YFL+V D
Sbjct: 297  EDKDSFSFLKQLSNKGLLKRLKKNDLD--EVDEKYKERLTSELKIIKDMGFPDYFLVVWD 354

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I++A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP R SMPD D DF
Sbjct: 355  YIKFARDNSIPVGPGRGSAAGSLVAYALQITNIDPVEHGLLFERFLNPARKSMPDIDTDF 414

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C DRR+EVI YV N+YG ++VAQIITF  + +KA L+DV R L +PY + D+L KLIP  
Sbjct: 415  CIDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGEADKLAKLIPVV 474

Query: 483  PAHPVSLQAIAD----DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
               P  L  + D       FR+  + D  + + ++++ ++EG  +    HAAG+VI   P
Sbjct: 475  RGKPYKLNEMIDKNSPSQEFRDKYINDNRIKKWVDLALRIEGTNKTYGVHAAGVVIASDP 534

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597
            L +LVP+ R+      +TQ++M  IE  GL+K DFLGLK LT+++K++  + Q    K++
Sbjct: 535  LDELVPLQRN-NEGQIITQYSMDDIESLGLLKMDFLGLKNLTMIEKTVSLVNQSSGKKIN 593

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  +P +D +T+ L+      GIFQLESSGM+Q ++  +P+ +EDI ++++LYRPGP+D 
Sbjct: 594  IDELPRNDSKTFELIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILALYRPGPLDA 653

Query: 658  --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  + NRKNG EKI   HP I  +L ET G+++YQEQ+M+IAQ L+GYSL +AD+LRR
Sbjct: 654  GLIPKFINRKNGNEKIDFPHPFIKSILTETYGIMVYQEQIMKIAQDLAGYSLGDADLLRR 713

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK   EM K +  F+ G+ K G+++ +A ++F+ +  FA+Y FNKSH+ AY  ++YQ
Sbjct: 714  AMGKKKVSEMVKHRNIFVEGSMKKGVNEKLANDLFDQMVLFAEYCFNKSHSTAYGAVTYQ 773

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K H+PV ++AA +++   + +K++++  +     I+++ PS+N   VDF + +N+I
Sbjct: 774  TAFLKAHFPVAYMAALLSVNSGSSDKMQRYISNCYSMGIEVISPSINFSGVDFTIKNNQI 833

Query: 836  YYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-- 892
             + L+AIK +G +  R+I+E       F SL D C R+ S  LN+R LESL+  GALD  
Sbjct: 834  LFGLSAIKNLGDSAIRNIIENRNSLGIFKSLADLCDRLPSNVLNKRSLESLIHCGALDEF 893

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG---TFSDKITLEKFSVENSS 949
                +R QLL  L+N+ ++A    ++R +   N+F  ++           L K    +  
Sbjct: 894  SIDNNRAQLLSDLENVIEWASSRNRDRLSGQGNLFDSKEEFSNVAFSDSQLAKVEDYSLI 953

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
             + + E+++LGFY S HPL       + +          T     + L  M+   +Q  T
Sbjct: 954  EKLKLEKQLLGFYLSDHPLKHLTKPAKLISPISISHLEETKDRTKVSLVGMIPDLKQITT 1013

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
            RKG R+  V   + +   EA  FP
Sbjct: 1014 RKGDRMAIVQLEDLSGSCEAIVFP 1037


>gi|315111547|ref|YP_508882.2| DNA polymerase III subunit alpha [Jannaschia sp. CCS1]
          Length = 1177

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 507/1069 (47%), Positives = 680/1069 (63%), Gaps = 59/1069 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+P FVHL++H+ YSLLEGA+ +  +   +A    PA+A+TDTNN+F ALEFS+ A  
Sbjct: 1    MTKAPKFVHLRLHTEYSLLEGAMKVKKMPGIVADAGMPAVAVTDTNNMFCALEFSEMAKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPIIGCQ+D++ +    +   G+ P      IVLL     GY+ L++L S +YL   
Sbjct: 61   AGVQPIIGCQIDLEYE----VIAPGEKPRAPAA-IVLLAQNRAGYENLMKLNSALYLRGD 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G  S  + LS L E   EGLI L+GG  GP+ R         AE  L T   ++ DRLYV
Sbjct: 116  GT-SPHVTLSELAE-HAEGLICLSGGPDGPVGRHLRAAQMPKAESLLKTLAAIYPDRLYV 173

Query: 185  NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       ++  E   V+LAY   LPLVATN+  F   E YEAHD ++ VA   
Sbjct: 174  ELQRHPGEGGLPEAEKLTERGHVELAYALGLPLVATNDVYFPKSEIYEAHDAMLCVAQGA 233

Query: 239  VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+TP HY K+  EM ++F+DLPEALENT+EIA+RC+F  +          +
Sbjct: 234  YVDQSEPRRRLTPQHYFKSADEMAALFADLPEALENTIEIAQRCAFRAE--------MHD 285

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    +E  ELR  A  GL+ RL    I      +DY+ RLDFEL +I  M F GYF
Sbjct: 286  PILPKFADDEVAELRRMANEGLKERLR--VIPHAASVEDYQARLDFELEIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQW+K   IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIQWSKDQEIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERISMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVIRYVQ KYG +RV QIITFG+L +KAA+RDVGR LQMP+ QVDRL K
Sbjct: 404  FDIDFCMDRREEVIRYVQEKYGRDRVGQIITFGALLSKAAVRDVGRVLQMPFGQVDRLSK 463

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSV---------DRLLEISQKLEGLYRHAST 527
            +IP +   PVS+   I D+ RF E                  RL++ ++K+EGL R+AST
Sbjct: 464  MIPVEGVKPVSIAQAIKDEPRFIEEMRESEQDKRDGRVNPTRRLMDYAEKIEGLLRNAST 523

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            HAAG+VIGDRPL +LVP+YRD RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q ++D
Sbjct: 524  HAAGVVIGDRPLDELVPLYRDPRSDMPATQFNMKWVEPAGLVKFDFLGLKTLTVVQNAID 583

Query: 588  FLAQRGVKVD------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             +   G ++                   ++LIP DD  +Y L  +  T+ +FQ+ESSGM 
Sbjct: 584  LIHTSGRQLHEGPDGTTLYEPPEGTENQINLIPLDDKASYDLYASAKTVAVFQVESSGMM 643

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             AL  M+PDCIEDIIALV+LYRPGP++NI  +   KNG  +   +HP +D +L ETQG+I
Sbjct: 644  DALRRMKPDCIEDIIALVALYRPGPMENIPKFCEVKNGLSERERLHPTVDHLLDETQGII 703

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+E MD ++ +F++GA +NG+ +  A+  
Sbjct: 704  VYQEQVMQIAQEMAGYSLGGADMLRRAMGKKIQEAMDAERPKFLAGAKENGVDEAKALET 763

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            + LL KFA+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M  ++   +K+  + Q+ 
Sbjct: 764  WALLDKFANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKQEV 823

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD----KPFDSL 865
             +  I+ + P VN     F V D ++ Y+L A+K VG    + I+E        KP+ +L
Sbjct: 824  DRMGIETLAPCVNRSAATFTVEDGKVLYALGALKNVGVEAMKMIVEGRQTDQGVKPYATL 883

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             D   RVD K++ +R LE LV AGA D    +R  +L SLD +  Y+  V    ++   +
Sbjct: 884  FDLARRVDLKRVGKRSLEMLVRAGAFDELDRNRRHVLDSLDGLTAYSAAVHDQASSNQVS 943

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            +F    G    +  L        + R   E + +GFYFSGHPLD Y+P L++ G+    E
Sbjct: 944  LFGDA-GDDLPEPRLSSAPDWLPNERLAAEHQAVGFYFSGHPLDDYQPALKRRGVMTLAE 1002

Query: 986  SVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              A ++      ++A  V  KQ++K+++G+R  +V+ S+P   YE   F
Sbjct: 1003 VEARVQQGPFVAKMAGAVSVKQERKSQRGNRFAFVSLSDPTGLYEITIF 1051


>gi|37524688|ref|NP_928032.1| DNA polymerase III subunit alpha [Photorhabdus luminescens subsp.
            laumondii TTO1]
 gi|36784113|emb|CAE12982.1| DNA polymerase III alpha subunit [Photorhabdus luminescens subsp.
            laumondii TTO1]
          Length = 1160

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1049 (39%), Positives = 603/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS YS+++G    + ++ K+A    PA AITD  NL   + F   A  
Sbjct: 1    MAE-PRFVHLRVHSDYSMIDGLAKTSPLVKKVAQLGMPAFAITDFTNLCGLVRFYGSAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    ++           +       S+ +L     GY  L  L+S  Y    
Sbjct: 60   AGIKPIIGADFYVE----------SELLGDEHASLTILARNNTGYHNLTLLISEAYQKGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL     EGLI+L+GG  G + +     +  + ++ L  +++ F    Y+
Sbjct: 110  GAIGPTIKQEWLIN-HKEGLILLSGGRMGDVGKFLLRGNQAMVDQCLEFYQEHFPGCYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  F+  ED++AH++ +A+     ++  
Sbjct: 169  ELIRTGRADEESYLHAAVALATEKSLPVVATNDVCFIDGEDFDAHEIRVAIHDGYTLADP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL++  EM  +F+D+PEALEN+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPKNYSPQQYLRSEQEMCELFADIPEALENSVEIAKRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L N++  GLE     L      +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GEMSTEDYLINRSQQGLEERLAFLYPDPKVRAEKRPEYDERLDIELRVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V + YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKRDLVIDHVADMYGRNAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PLDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K  L 
Sbjct: 523  TDFSPLYCDPEGLNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRTKKGLE 582

Query: 600  L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                  IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIAAIPLNDAKSFDMLQRAETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     I   H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREELSYPDIQWQHESLQPVLEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA K GI+  +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFEDGAKKLGINGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLIDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA   D  F  L D C+RVD+KKLNRRV+E L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARQKDGYFRELFDLCARVDTKKLNRRVMEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL++  K A    K       ++F    +     + +    S
Sbjct: 883  IMSGAFDRLGPHRAALMSSLEDALKAADQHAKAEATGQTDMFGVLAEAPEEVERSYANIS 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVS 1003
                 +  + E+  LG Y +GHP+  Y   + +       ++   T RG    +  +V++
Sbjct: 943  QWPEQIVLDGERETLGLYLTGHPITRYLKEIERYTSGLRLKDVNPTPRGQVTTVIGLVLA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 SKVIITKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|117921241|ref|YP_870433.1| DNA polymerase III subunit alpha [Shewanella sp. ANA-3]
 gi|117613573|gb|ABK49027.1| DNA polymerase III, alpha subunit [Shewanella sp. ANA-3]
          Length = 1158

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1047 (40%), Positives = 603/1047 (57%), Gaps = 37/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NNL   ++F      
Sbjct: 1    MSD-PRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q         ++ ++    +GYQ L +++S+ YL   
Sbjct: 60   AGIKPIIGADFWM----------QVPGFDGEFCALTIIAMNNDGYQNLTQIISQAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +  V I   WL     EG+++L+GG  G + +A    ++   E     +++ F  R Y+
Sbjct: 110  VQGRVVIDQEWLVTY-NEGILLLSGGREGDVGKALLKGNNTQVESLCEFYQQHFEGRYYL 168

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R     V LA    +P+VATN  +FL  ED+E+H++ +A+     ++  
Sbjct: 169  ELLRTGRTDEERYLHMAVGLAQEKGIPVVATNQVVFLKPEDFESHEIRVAIHDGFTLADP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   YL++  EM  +F+D+P ALENTVEIA+RC+  ++++              
Sbjct: 229  RRPKKYSEQQYLRSEEEMCELFADIPAALENTVEIAKRCNVTIRLYEYF-----LPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L + +  GLE RL          A+   +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMSIEDYLVDCSKKGLEERLEFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   +   +E+  AD  V  L+++ +KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPEPGMTL-AKAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +          
Sbjct: 523  TDFSPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PVRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRGTFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + I+PP VN     
Sbjct: 763  AYALVSYQTLWLKTHFPSQFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKGLFK 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+
Sbjct: 823  FTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFKDLFDFCARIDLKKLNKRVIEKLI 882

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945
             AGALD  G  R  ++ +L      A    K       ++F        D K    + + 
Sbjct: 883  CAGALDALGPHRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVECTP 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ +
Sbjct: 943  WPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATR 1002

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++GS++G +T  + +   E   F
Sbjct: 1003 VMLTKRGSKMGLLTLDDKSARLEVMLF 1029


>gi|171913486|ref|ZP_02928956.1| DNA polymerase III, alpha subunit [Verrucomicrobium spinosum DSM
            4136]
          Length = 1155

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/1039 (37%), Positives = 593/1039 (57%), Gaps = 27/1039 (2%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL +H+ YS+L+GA+ + +++ K  +   PA+A+TD  NLF A+EF Q+A  AGI
Sbjct: 2    SASFVHLHLHTEYSMLDGAVRIPDLMKKAKSLGMPAVAMTDHGNLFGAIEFYQEANKAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC++ +      +   +  T       + LL +  EGY  L++LV+  +L D    
Sbjct: 62   KPIIGCEIYLAPGSMWEK--KDVTGRKRSSHLTLLAANNEGYANLVKLVTLAHL-DGMYH 118

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              R+    L++  +EGLI L+G  SG I+     +    A K +  F  +FG D  Y+ L
Sbjct: 119  KPRVDKEALKK-HSEGLICLSGCISGEINEFILTDREDEARKTVQEFIDIFGKDNFYLEL 177

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              H    + R   ++ + +    L +VA N+  FL++ED+EAHDV++ +  +  V  + R
Sbjct: 178  HNHGMAQQQRCMLKLREFSREFGLKMVAANDVHFLNKEDHEAHDVMICIGTAANVHDEKR 237

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               +P+ Y K   +M  +F D  EA + T+EIA +C+  L++ A  + +   +      +
Sbjct: 238  LHYSPEVYFKTAEQMRELFEDFEEACDTTLEIAEKCNIKLKLDASSIEK-YPQFPPPEGQ 296

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E   R     G    + +    +  +    R+RLD+EL +I +M F+ YFLIV DFI+
Sbjct: 297  TREGYFRQLCEDG---MIFRYGKERAMNDAMLRERLDYELGIINKMNFTSYFLIVWDFIK 353

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WA+ + IPVGPGRGS AGS+ AY+L ITD+ P+RF L+FERFLNP+R+S PD DIDFCQ 
Sbjct: 354  WARDHGIPVGPGRGSAAGSLVAYSLGITDLCPIRFGLIFERFLNPERVSPPDVDIDFCQT 413

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV+  YG   V+ IITFG++ AK+ +RDVGR L   Y   DRL K+IP +   
Sbjct: 414  RRPEVIEYVRQHYGERSVSHIITFGTMGAKSVVRDVGRVLGWSYGDADRLSKMIPTELNI 473

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +   A+  +   + A   + S  +L + +  LEG+ R+A  HAAGIVIGD+PL   +P+
Sbjct: 474  DLE-SAVEKNPELKAALENESSTQQLWQYATFLEGMTRNAGIHAAGIVIGDQPLDNFIPL 532

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
             R       V QF M  +   G++K DFLGLKTLT+++ ++DF+  R    +L  +P DD
Sbjct: 533  TRGS-EGEVVAQFAMGPLTDVGMLKMDFLGLKTLTVIKDAVDFVRLRFPDFNLDAVPLDD 591

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              TY +L    T+ +FQ+ES GM      ++PD IE+IIAL++LYRPGP+D I  +  RK
Sbjct: 592  KTTYEMLRKGETIAVFQMESGGMALTCRQLEPDKIEEIIALLALYRPGPMDLIPDFIKRK 651

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G++++  +HPL++ + KET G++IYQEQV + A LL+GYSL  AD+LRRAMGKK  EEM
Sbjct: 652  KGEQRVEYLHPLLEDVSKETYGILIYQEQVQKAANLLAGYSLGAADLLRRAMGKKKPEEM 711

Query: 726  DKQKERFISGASKNGI-SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +KQ+  F+ G  +        A +IF+LL KFA YGFNKSH+AAY +++Y+TA++K +YP
Sbjct: 712  EKQRTIFVKGCGETNQIPAKKANDIFDLLEKFAGYGFNKSHSAAYGIVTYRTAYLKANYP 771

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-------DNRIYY 837
            VEF+AA ++ E+++ +K+  F  + ++  I I+PP VN   + F           N I Y
Sbjct: 772  VEFMAAVLSYEVNSTDKLAGFVSECQRMGITILPPDVNKSSLKFAPECIEGSDVPNAIRY 831

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LAA+K VG       +     + PF SLEDFC+RVDS+ +N+R++E L+  G  D  G 
Sbjct: 832  GLAAVKNVGEAAMAAAIAERTKNGPFTSLEDFCARVDSRMINKRLMEPLIKVGGFDWTGQ 891

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE--KFSVENSSVRFEN 954
             R  +   LD +   A   +K R     ++F  +    +     +               
Sbjct: 892  DRAGMCFVLDEVLSNASSRQKERKAGMVSLFDDDTMGATKNTLAKSAGPPPWKKEELMAF 951

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGS 1013
            E+ +LGF+ SGHPLD Y+ I     I    +         ++R+A ++   + K T+K +
Sbjct: 952  EKELLGFFVSGHPLDNYRHIYESKYITRIADVQEVKEERVSLRVAGLIQRLEVKYTKKDN 1011

Query: 1014 RIGWVT--FSEPAKEYEAN 1030
            R  + T    + +   E  
Sbjct: 1012 R-AFATFALEDFSGTVEVI 1029


>gi|89092103|ref|ZP_01165058.1| DNA polymerase III subunit alpha [Oceanospirillum sp. MED92]
 gi|89083838|gb|EAR63055.1| DNA polymerase III subunit alpha [Oceanospirillum sp. MED92]
          Length = 1163

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1052 (38%), Positives = 596/1052 (56%), Gaps = 42/1052 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P+FVHL+VH+ +SL++G + +  ++     +  PA+ +TD  N F  ++F + A  
Sbjct: 1    MTD-PTFVHLRVHTEFSLVDGLVRVKELVAAAKKEGMPAVGMTDQTNFFGLVKFFKAATG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI G  L ++  D          P      I LLV  A+GY  L+EL+S+ Y   Q
Sbjct: 60   NGIKPICGSDLWVENTDE---------PGGEPYRITLLVRNAQGYLNLMELISQAYAEGQ 110

Query: 125  G--KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                    +   W+ E   EGLI L+G   G + RA        A + L  +  +F D  
Sbjct: 111  NIIPDMALVKPEWV-EAKAEGLIALSGAKKGEVGRAILAEK-GQAPEVLQRWMGVFKDSF 168

Query: 183  YVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +QR     D       V+LA     PLVATN  +F+  +D+EAH+V + +  S  + 
Sbjct: 169  YLEVQRTGRVGDEQIVHGSVELAKQFGCPLVATNEVMFVKADDFEAHEVRVCINQSRTLE 228

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               RP+  +   Y +++ EM ++FSD+P AL+N+VEIA+RC+  +++    LP++   E 
Sbjct: 229  DPTRPKEYSEQQYFRSQREMEALFSDIPSALQNSVEIAKRCNIDIEIGTYYLPKYPIPEG 288

Query: 301  DDIQKEEENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              +    ++  R  +  GLE RL     +         Q+Y  RL+FEL++I +M F GY
Sbjct: 289  MLM----DDFFRKVSFDGLEERLEILLDRDDPEYDAKRQEYIDRLEFELDIIIQMGFPGY 344

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV DFI+W K+N +PVGPGRGSGAGS+ AYA  ITD+DPL + LLFERFLNP+R+SMP
Sbjct: 345  FLIVMDFIKWGKENGVPVGPGRGSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVSMP 404

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC D RD+VI YV   YG + V+QI+TFG++ AKA +RDV R    P+   DRL 
Sbjct: 405  DFDIDFCMDNRDKVIDYVARTYGRDAVSQIVTFGTMAAKAVVRDVARVQGKPFGLADRLS 464

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KLIP +P   +  +A+  +    E   +      +++++ KLEG+ R    HA G+VI  
Sbjct: 465  KLIPFEPGITLK-KALDQEPMLCEFIESSEEAQEIMDMAYKLEGVTRGVGKHAGGVVIAP 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-----FLAQ 591
              L+     Y D   +  VTQF+   +E+AGL+KFDFLGL+TLT++  +L         Q
Sbjct: 524  TKLTDFAATYCDEEGNGLVTQFDKGDVEEAGLVKFDFLGLRTLTIIDWALQTVNRIRDKQ 583

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                +D++LI  +D +T+ LL    T  +FQLESSGM+  +  + P   EDI+ALV+L+R
Sbjct: 584  GEEPLDIALIDLEDKKTFDLLQAAETTAVFQLESSGMKDLVRRLLPSRFEDIVALVALFR 643

Query: 652  PGPIDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            PGP+ + +V       +   +            + P+L+ T G+I+YQEQVMQIAQ+++G
Sbjct: 644  PGPLQSGMVDDFINRKHGRAEMAWPHPDYQLDSLQPVLEPTYGIILYQEQVMQIAQVMAG 703

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            Y+L  AD+LRRAMGKK  EEM KQ+  F+ G+ +NGI + +A NIF+L+ KFA YGFNKS
Sbjct: 704  YTLGGADMLRRAMGKKKPEEMAKQRVSFLDGSEQNGIDRDLAGNIFDLVEKFAGYGFNKS 763

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA++SYQTAW+K HYP  F+AA M+ +M N +K+  F ++ R   I    P+VNT 
Sbjct: 764  HSAAYALVSYQTAWLKAHYPAPFMAAVMSSDMQNTDKVVIFIEECRNMGIPPALPNVNTG 823

Query: 825  CVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVL 882
               F V D   I Y L AIKGVG      I+EA A+   F+ L DFC RV +KKLN+RVL
Sbjct: 824  EYMFTVNDEGVIVYGLGAIKGVGEGPIEAIVEARAEGGEFNDLFDFCERVGAKKLNKRVL 883

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITL 940
            E+LV +GA+DC G  R  L +++ +  K A    KN      ++F   +           
Sbjct: 884  EALVRSGAVDCLGAERAVLWEAIPDALKAADQAAKNSDAGMFDLFGEVEAESDRCTYEDY 943

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                      R   E+  LG Y +GHP+D Y+  L+    +   E      G   ++A +
Sbjct: 944  RNVRSWTDKERLAGEKDTLGLYLTGHPIDEYEAELKHFISRRIVELQPAR-GQTQKMAGL 1002

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            VV  + KKT+KG  + +VT  + +   +   F
Sbjct: 1003 VVDLRLKKTKKGDNLCFVTLDDRSARIDVTLF 1034


>gi|229588818|ref|YP_002870937.1| DNA polymerase III subunit alpha [Pseudomonas fluorescens SBW25]
 gi|229360684|emb|CAY47542.1| DNA polymerase III alpha subunit [Pseudomonas fluorescens SBW25]
          Length = 1173

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1065 (38%), Positives = 597/1065 (56%), Gaps = 57/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  
Sbjct: 1    MP--ASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI G  L +  +D          P   +  I LL     GY+ L EL+SR ++  Q
Sbjct: 59   AGIKPICGADLWLSNKD----------PDNPLSRISLLAMNGVGYRNLTELISRGFIDGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
               S+ I   W+ E   EGLIML+    G I  A    + Q AE     + ++F DR Y+
Sbjct: 109  RNGSIIIEREWVAE-ANEGLIMLSAAKEGEIGIALLGGNPQEAEVLAREWMQVFPDRFYL 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR +R  D       V LA     PLVATN+  F+ +ED+EAH+  + +     +   
Sbjct: 168  EIQRTNRPNDEEHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDP 227

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R +  + + YLK+  EM  +FSDLPEALEN+VEIA+RC+  +++    LP F   +   
Sbjct: 228  RRSKNYSEEQYLKSADEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMT 287

Query: 303  IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            I    +   R  +  GLE R                 Q Y  RL+FEL++I +M F GYF
Sbjct: 288  I----DEYFRKVSFDGLEERLSVLLPKDTTEDYDAKRQVYVDRLNFELDIIIQMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 344  LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K
Sbjct: 404  FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSK 463

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP +    +  +A   +   R+    D     + ++++KLEG+ R+   HA G+VI   
Sbjct: 464  MIPFEVGMTLE-KAYEQEEILRDFIKVDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPT 522

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592
             L+   P+Y D      VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +      
Sbjct: 523  KLTDFSPIYCDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +D++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RP
Sbjct: 583  EEPLDIAFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642

Query: 653  GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V +                   +  + P+L  T G+I+YQEQVMQIAQ+++GY
Sbjct: 643  GPLQSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  FI G + N I   +A NIF+L+ KFA YGFNKSH
Sbjct: 703  TLGGADMLRRAMGKKKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSH 762

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAY ++SYQTAW+K HYP  F+AA ++ +M N +K+    ++ R   +++  P VN   
Sbjct: 763  SAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASE 822

Query: 826  VDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F V D  RI Y L AIKGVG      I EA  D PF  L DFC+RVD K++N+R L+ 
Sbjct: 823  FKFTVNDEGRIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDG 882

Query: 885  LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+ +GALD  G                +R  LL +++   K A+   +   + H ++F  
Sbjct: 883  LIRSGALDRLGPYFHDEPKAYQANIDRNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGG 942

Query: 930  EKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                    +     K        R + E+  LG Y +GHP+D Y+  +R+   +   +  
Sbjct: 943  LFVEEDADVYGNHRKAKDLTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +A M+++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1003 PARDTQ--TVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045


>gi|119946582|ref|YP_944262.1| DNA polymerase III, alpha subunit [Psychromonas ingrahamii 37]
 gi|119865186|gb|ABM04663.1| DNA polymerase III, alpha subunit [Psychromonas ingrahamii 37]
          Length = 1173

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1048 (39%), Positives = 589/1048 (56%), Gaps = 38/1048 (3%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             K P F+HL+VHS YS+++G   +  ++ K AA   PA+AIT+  N    ++F   A  A
Sbjct: 11   TKQPKFIHLRVHSDYSMVDGVTKIKPLVAKAAALNMPALAITEQTNFCGLVKFYGAAHDA 70

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PI+G    +          + +        I  L     GY+ L EL+S+ YL    
Sbjct: 71   GIKPIVGVDFWV----------KSELLADEQFRITALAMNNAGYKNLTELISKAYLRGHV 120

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   WL E   +G+I+L+GG  G + +     + ++A + +  +++ F  R Y+ 
Sbjct: 121  GGRAVIDQDWLAE-HNQGIILLSGGKDGDLGKVLLKGNHELAVEIIQFYQQYFAQRYYIE 179

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R +R  +       +  A  ++LP+VATN  +F  +  Y+AH++ + +     +    
Sbjct: 180  LIRTNRLNEETYLHYALDWAEKYQLPVVATNEVVFADKALYDAHEIRVCINQGYTLGDNR 239

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP+  + + YL+++ EM  +F+D+PEAL+N+VEIA+RC+  L++       +   +    
Sbjct: 240  RPKQYSDEQYLRSQEEMCELFADIPEALKNSVEIAKRCNVTLRLGE-----YFLPDFPTG 294

Query: 304  QKEEENELRNKAVAGLEVRLA----QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 +   + +  GLE RLA    + A         Y QRL  EL+VI  M F GYFLI
Sbjct: 295  DMSITDYFCDVSRKGLEDRLAILFDKNAPEFADIRAPYDQRLQIELDVINTMGFPGYFLI 354

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL   LLFERFLNP+R+SMPDFD
Sbjct: 355  VMEFIQWSKDNKIPVGPGRGSGAGSLVAYALKITDLDPLELELLFERFLNPERVSMPDFD 414

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC DRRDEVI +V   YG + V+QIITFG++ +KA +RDVGR L  PY  VD + KLI
Sbjct: 415  IDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMASKAVIRDVGRVLGHPYGFVDGISKLI 474

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P  P   +S +A A++ R +E       V  L+++ + LEG  R+A  HA G+VI    +
Sbjct: 475  PPTPGMTLS-KAFAEEPRLQERYDGSEEVRALIDMCRTLEGTIRNAGKHAGGVVISPTTI 533

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++Q +LD            
Sbjct: 534  TDFSPLYCDELGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIVQWALDMANAHKHARGEE 593

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               +  I   +   + LL    T  +FQLES GM+  +  +QPD  ED+IALV+L+RPGP
Sbjct: 594  TLFIEKICLTEPACFELLKRYETTAVFQLESRGMKDLIRRLQPDSFEDMIALVALFRPGP 653

Query: 655  IDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V N  +                HP ++ +L  T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 654  LQSGMVDNFIERKHGREAVSFPDEKWQHPSLEEILAPTYGIILYQEQVMQIAQVLSGYTL 713

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+E F  GA  NGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 714  GGADMLRRAMGKKKPEEMAKQRETFEQGAIDNGIDGELAMKIFDLVEKFAGYGFNKSHSA 773

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT WMKT YP  F+AA M+ +MDN EKI     + +   + + PP VN     
Sbjct: 774  AYALVSYQTLWMKTFYPSYFMAAVMSADMDNTEKIVTLVAECQSMGLDLGPPDVNEGLFK 833

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  + RI Y + A+KGVG      I+EA  A   F  L DFC+R+D K  N+R+LE L
Sbjct: 834  FNVDPDLRIIYGIGAVKGVGEGPVDAIIEARTAGGKFIDLFDFCNRIDLKHCNKRILEKL 893

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + AGALD  G  R  L+++L N  K A   +K  +    ++F      +           
Sbjct: 894  ILAGALDKLGPHRAALMETLPNALKSALQHKKAESFGQSDLFGVLTTDSEEIADKFSSVD 953

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                      E+  LG Y +GHP++ Y+  +R        + VA  RG N R+A +++S 
Sbjct: 954  KWPEKQWLAGEKETLGLYLTGHPINQYETDIRAFHCLKLSDLVANRRGQNSRVAGLILSM 1013

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+ G R+G +T  + +   E   F
Sbjct: 1014 RIMVTKAGKRMGIITLDDKSARMEITVF 1041


>gi|92112711|ref|YP_572639.1| DNA polymerase III subunit alpha [Chromohalobacter salexigens DSM
            3043]
 gi|91795801|gb|ABE57940.1| DNA polymerase III, alpha subunit [Chromohalobacter salexigens DSM
            3043]
          Length = 1168

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1056 (39%), Positives = 605/1056 (57%), Gaps = 47/1056 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL+VH+ YSL++G + L  +++       PA+A+TD +NLF  ++  + A  
Sbjct: 1    MTTP--FVHLRVHTEYSLVDGLVRLKPLIEATVEGGMPAVAVTDDSNLFGLVKTYKAAQG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++P+IG  L ++   + +              + LL    +GY+ L EL+S+ +   Q
Sbjct: 59   AGLKPVIGADLWMENPHDEEHP----------YRVTLLAMDNDGYRHLTELISQGWSEGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +   W+    + GLI L+G   G I R       Q A +    +K  F  R Y+
Sbjct: 109  QRGQGILKKEWIFAR-SAGLIALSGARDGEIGRYLLSEHGQAARELCEGWKAAFPGRFYL 167

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR    +D       V LA   E P+VATN+  FL+ EDY AH+  +A+     +   
Sbjct: 168  EVQRTGREHDEECLHLSVALAAETETPVVATNDVRFLTREDYWAHETRVAIGEGKALDDP 227

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R + + YLK+  EM  +FSDLPEALEN+V IA RC+  + +    LP +   +   
Sbjct: 228  RRERRYSEEQYLKSPQEMAELFSDLPEALENSVMIAARCNVDVPLGEIFLPEYPVPDGMS 287

Query: 303  IQKEEENELRNKAVAGLEV---------RLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            +    +   R  +  GL                      +   YR+RLDFELN+I  M F
Sbjct: 288  M----DGFFRKISHDGLTERLDKLFSGENPIYPGRDLAEYEPAYRERLDFELNIILEMGF 343

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFLIV DFIQWAK N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+
Sbjct: 344  PGYFLIVMDFIQWAKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERV 403

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPDFD+DFC ++RD VI YV ++YG + V+QI+TFG++ AKA +RDV RA   PYS  D
Sbjct: 404  SMPDFDVDFCMEKRDRVIEYVASRYGRDAVSQIVTFGTMAAKAVVRDVARAQGKPYSMGD 463

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            +L KLIP +    +  +AI  +   +E   +D     + +++ KLEG+ R    HA G+V
Sbjct: 464  KLSKLIPFEVGMTL-AKAIEQEPALKEYLDSDEESQEIWDMALKLEGITRGTGKHAGGVV 522

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL---- 589
            I    L+   P+  D      V Q++   IE+AGL+KFDFLGL+TLT++  +L+ +    
Sbjct: 523  IAPTKLTDFSPLLCDEDGSGLVVQYDKNDIEEAGLVKFDFLGLRTLTIIDWALEMVDTVR 582

Query: 590  -AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
              +    +D++ IP DD  T+ +L    T  +FQLES GM++ ++ +QPD +ED+IALV+
Sbjct: 583  AREGQGPLDIASIPLDDVPTFDMLKKAETTAVFQLESRGMKELIKRLQPDSLEDMIALVA 642

Query: 649  LYRPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQL 701
            L+RPGP+ + +   + NRK+G+ ++   HP      + P+L+ T G+I+YQEQVMQIAQ+
Sbjct: 643  LFRPGPLQSGMVDDFINRKHGRAEVAYPHPDYQHELLKPVLEPTYGIILYQEQVMQIAQV 702

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            L+GYSL +AD+LRRAMGKK  EEM KQ+  F+ G + NGI K +A N+F+L+ KFA YGF
Sbjct: 703  LAGYSLGQADMLRRAMGKKKPEEMAKQRAGFMEGCAANGIDKDLAGNLFDLVEKFAGYGF 762

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NKSH+AAY ++SYQTAW+K HYP  F+AA ++ EMDN++K+    ++ R   + + PP V
Sbjct: 763  NKSHSAAYGLVSYQTAWLKAHYPAPFMAAVLSTEMDNLDKVVPLIEECRNQGLTVTPPDV 822

Query: 822  NTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNR 879
            N     F V +  R+ Y L AI+GVG      I+EA  AD  F  L DFC RVD+K+LN+
Sbjct: 823  NMGSYKFTVDEQGRVVYGLGAIRGVGEGPIGAIVEAREADGAFSDLFDFCRRVDAKRLNK 882

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---EKGTFSD 936
            R LE+L+ +GALD  G +R  L+ SL+   K A     N      ++F     E      
Sbjct: 883  RTLEALIRSGALDNLGPTRAVLMASLEAALKAAAQSTTNANLGMMDMFGEAFSEPEAGDA 942

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
                          R   E+  LG Y +GHP+D Y+  L++       +      G + R
Sbjct: 943  YADYRGVREWTDKERLAGEKDTLGLYLTGHPIDEYESELKRFVSTRIVDLKPQR-GESQR 1001

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +A +VV+ +  K+++G  + ++T  +     EA+ F
Sbjct: 1002 VAGLVVAMRTMKSKRGDTMAFITLDDRTGRIEASLF 1037


>gi|146279950|ref|YP_001170108.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides ATCC 17025]
 gi|145558191|gb|ABP72803.1| hypothetical protein Rsph17025_3949 [Rhodobacter sphaeroides ATCC
            17025]
          Length = 1163

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 505/1058 (47%), Positives = 665/1058 (62%), Gaps = 48/1058 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+VH+ YSLLEGA+ +  ++    A   PA+A+TDTN +F+ALEFS  A  
Sbjct: 1    MSNAPRFIHLRVHTEYSLLEGAVPVKKLIGLCTAAAMPAVAVTDTNAMFAALEFSVLASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPI+GCQ+ +  +        G+   P  P +VLL     GY  L++L S +YL  +
Sbjct: 61   AGIQPIVGCQVSVAYE----TAALGERAKPPAP-VVLLAQNEAGYGNLMKLSSCLYL-GK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 ++ L  L E    GLI LTGG  GP+ R         AE  L     ++  RLYV
Sbjct: 115  EGALPQVTLEEL-ERHASGLICLTGGPDGPVGRHLREGQRAKAEALLGRLAAIYPGRLYV 173

Query: 185  NLQRHRGY-------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             LQRH G        +R  E   V+LAY   LPLVATN+  F   E YEAHD L+ +A  
Sbjct: 174  ELQRHPGEGGRLTEAERATEPGHVELAYAMGLPLVATNDVYFPKPEMYEAHDALICIAEG 233

Query: 238  TVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              V Q   R R+TP HY K+ +EMV++F+DLPEA+ENTVEIARRC+F             
Sbjct: 234  AYVDQVAPRRRLTPQHYFKSEAEMVALFADLPEAVENTVEIARRCAFKAAKR-------- 285

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                     +E  ELR +A  GL  RLA   I      +DY  RL FEL +I +M F GY
Sbjct: 286  PPILPRFADDEVEELRRQAKGGLAARLA--VIPHAAPVEDYEARLAFELGIIEQMGFPGY 343

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFI+W K N IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMP
Sbjct: 344  FLIVADFIKWGKANGIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMP 403

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL 
Sbjct: 404  DFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLS 463

Query: 477  KLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            K+IP +   PVS+Q  +AD+ R REA   +  V RLL+   ++EGL R+ASTHAAG+VIG
Sbjct: 464  KMIPVEGVKPVSIQKALADEPRLREAAKTEEVVKRLLDYGMQVEGLLRNASTHAAGVVIG 523

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            DRPL +LVP+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q ++D +   G  
Sbjct: 524  DRPLDELVPLYQDPRSDMPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNAIDLIRGTGRP 583

Query: 596  VD------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            +                   +  IP +D   Y L     T+ +FQ+ESSGM  AL  M+P
Sbjct: 584  LHMAADGRVLYDPPPGAENDIGHIPLEDKAAYELYAQAKTVAVFQVESSGMMDALRRMKP 643

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             CIEDI+ALV+LYRPGP++NI VY   K+G  ++ S+HP IDP+LKETQG+I+YQEQVMQ
Sbjct: 644  TCIEDIVALVALYRPGPMENIPVYCEVKHGLRELESLHPTIDPILKETQGIIVYQEQVMQ 703

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKF 756
            IAQ+++GY+L  AD+LRRAMGKKI EEM K++ +FI GA K +GI    A  +F+LL KF
Sbjct: 704  IAQVMAGYTLGGADLLRRAMGKKIAEEMAKERPKFIEGAKKTHGIDTKKAGEVFDLLEKF 763

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M  ++   +K+  + ++  +  I+ 
Sbjct: 764  ANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREVDKLGIRT 823

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            + P VN     F V D  + Y+L A+K VG    R I+EA  D+PF +L D   RV+ KK
Sbjct: 824  VAPCVNASLATFTVRDGAVVYALGALKNVGVEAMRLIVEARGDRPFATLFDMARRVELKK 883

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            + +R LE L  AGA D    +R ++ ++LD +  Y+  + + R +   ++F  E G    
Sbjct: 884  IGKRPLEMLARAGAFDALDRNRARVFEALDALVSYSAAIHEARNSSQVSLFG-EAGADIP 942

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-- 994
            +  L          R   E + +GFY SGHPLD Y   L++  +          +     
Sbjct: 943  EPRLPSRDDWLPVERLAQEHQAIGFYLSGHPLDDYMGALKRRNVTTLAALTDLAQRGPMV 1002

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +LA  V S+Q+KK+ KG+R  +V  S+P   YE   F
Sbjct: 1003 AKLAGAVSSRQEKKSAKGNRFAFVQLSDPTGLYECTVF 1040


>gi|78184874|ref|YP_377309.1| DNA polymerase III subunit alpha [Synechococcus sp. CC9902]
 gi|78169168|gb|ABB26265.1| DNA polymerase III, alpha subunit [Synechococcus sp. CC9902]
          Length = 1172

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1053 (36%), Positives = 585/1053 (55%), Gaps = 41/1053 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L +++++      PAIA+TD   ++ A+E  +      ++P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPSMVERAKELGMPAIALTDHGVMYGAIELLKLCKGTDLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          +          +V+L   A GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPQPK----KEKRYHLVVLAKNAIGYRNLVKLTSISHLRGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 +    L +  +EGLI+ T    G I +A      +VA      ++ +FG+  Y+ 
Sbjct: 118  FSRACVDKDLL-QRHSEGLIIATACLGGEIPQAILRGRPEVARDVARWYQDVFGEDFYLE 176

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR   S++V++A   ++ LVATN++ +L+++D EAHD L+ V    ++S + 
Sbjct: 177  IQDHGSPEDRIVNSEIVKIAEELDIQLVATNDAHYLTKQDVEAHDALLCVLTGKLISDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL------PEALENTVEIARRCSFILQVHAPILPRFIEK 298
            R R T   Y+K   EM  +F+D        +A+ NT ++A +      +    +PRF   
Sbjct: 237  RLRYTGTEYIKTEEEMGRLFTDHLDPDVVQKAITNTAKVAEKVEDYDILGKYQMPRFPIP 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            +           LR   + GL  RL     +    A++Y  R+  EL ++ +M F  YFL
Sbjct: 297  DG----HTAVTYLREVTLQGLRDRLE--LKSDDPIAENYADRMSHELEIMEQMGFPTYFL 350

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D+I++A++ NIPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD 
Sbjct: 351  VVWDYIRFAREQNIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDI 410

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DFC +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KL
Sbjct: 411  DTDFCIERRCEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKL 470

Query: 479  IPNDPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP     P  L+A+    + +  FRE    DP V R ++++ ++EG  +    HAAG+VI
Sbjct: 471  IPVVRGKPAKLKAMIGDESPNPEFREKYQGDPVVKRWVDMAMRIEGTNKTFGVHAAGVVI 530

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRG 593
               PL QLVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +    G
Sbjct: 531  AADPLDQLVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEVSSG 589

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             ++D   +P  D +T+ LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYRPG
Sbjct: 590  TRIDPDKLPPQDADTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPG 649

Query: 654  PIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+D   I  + NRK+G+E I   H +++P+L ET G+++YQEQ+M+IAQ L+GYSL +AD
Sbjct: 650  PLDAGLIPKFINRKHGREAIDFAHEILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQAD 709

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK   EM K +  F+ GA K G+   ++  +F+ +  FA+Y FNKSH+ AY  
Sbjct: 710  LLRRAMGKKKVSEMQKHRGIFVEGAKKRGVDVKVSDELFDQMVLFAEYCFNKSHSTAYGA 769

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K HYPV ++AA +T+     +K++++  +     I++MPP +N   +DF   
Sbjct: 770  VTYQTAYLKAHYPVAYMAALLTVNAGAADKVQRYISNCNAMGIEVMPPDLNASLIDFTPN 829

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             +RI + L+A++ +G    R ++E+  +  PF SL D C R+ S  LNRR LESL+  GA
Sbjct: 830  GDRILFGLSAVRNLGDGAIRRLIESRENDGPFRSLADLCDRLPSSVLNRRGLESLIHCGA 889

Query: 891  LDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--------ITL 940
            +D      +R QL+  LD +  +A    K+R +   N+F        D            
Sbjct: 890  MDAMDPNANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAAPAEDDGPTDLSMAPKA 949

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                    S +   E+ ++GFY S HPL    P  R +   G            +    M
Sbjct: 950  APVPDYPPSEKLRLEKDLVGFYLSDHPLKQLTPSSRLLAPIGLGSLEEQPDKAKVSAITM 1009

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +   +Q  TRKG R+  +   +     EA  FP
Sbjct: 1010 ITELRQVTTRKGDRMAILQLEDLTGSCEAVVFP 1042


>gi|253988140|ref|YP_003039496.1| DNA polymerase III subunit alpha [Photorhabdus asymbiotica subsp.
            asymbiotica ATCC 43949]
 gi|253779590|emb|CAQ82751.1| dna polymerase iii alpha subunit [Photorhabdus asymbiotica]
          Length = 1160

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1049 (39%), Positives = 605/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS YS+++G    + ++ K+A    PA AITD  NL   + F   A  
Sbjct: 1    MAD-PRFVHLRVHSDYSMIDGLAKTSPLVKKVAQLGMPAFAITDFTNLCGLVRFYGSAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG    ++           +       ++ +L     GY  L  L+S  Y    
Sbjct: 60   AGVKPIIGADFYME----------SELLGDEYANLTILARNNTGYHNLTLLISEAYQQGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL     EGLI+L+GG  G + +     +  + ++ L  +++ F D  Y+
Sbjct: 110  GAAGPTIKQKWLVSR-KEGLILLSGGRMGDVGKFLLRGNRAMVDQCLEFYQEHFPDCYYL 168

Query: 185  NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     D       V LA    LP+VATN+  F+ +ED++AH++ +A+     ++  
Sbjct: 169  ELIRTGRVDDENYLHAAVALATEKNLPVVATNDVCFIDKEDFDAHEIRVAIHDGYTLADP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL++  EM  +FSD+PEALEN+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPKNYSPQQYLRSEQEMCELFSDIPEALENSVEIAKRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   EN L  K+  GLE     L      +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GEMSTENYLIEKSKQGLEERLTFLYPDPEVRAEKRPEYDERLDVELRVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKRDLVIDHVADIYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +    +A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PLDPGMTLEKAFVA-EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R       
Sbjct: 523  TDFAPLYCDPEGLNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKGLE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP +D++++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIAAIPLNDNKSFDMLQRAETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     I   H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDIQWQHESLQPVLEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA K GI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFEEGAKKLGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLIDECWRMGLKILPPDINSGLYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA   D  F  L D C+RVD+KKLNRRV+E L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARKKDGYFRELFDLCARVDTKKLNRRVMEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL++  K A    K       ++F    +     + +    S
Sbjct: 883  IMSGAFDRLGPHRAALMSSLEDALKAADQHAKAEAIGQTDMFGVLAEAPEEVERSYANVS 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP+  Y   + +       ++   T RG    +  +V++
Sbjct: 943  QWPEQVVLDGERETLGLYLTGHPITRYLKEIERYTNGLRLKDVNPTPRGQVTTVVGLVLA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 SKVIMTKRGNRIGLCTLDDRSGRLEVMLF 1031


>gi|307546379|ref|YP_003898858.1| DNA polymerase III subunit alpha [Halomonas elongata DSM 2581]
 gi|307218403|emb|CBV43673.1| DNA polymerase III, alpha subunit [Halomonas elongata DSM 2581]
          Length = 1169

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1059 (38%), Positives = 601/1059 (56%), Gaps = 51/1059 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL+VHS +SL++G + L  ++        PA+A+TD  NLF+ +++   A  
Sbjct: 1    MTTP--FVHLRVHSEFSLVDGLIRLKPLIKAAVEQGTPALALTDEANLFALVKYYTGAQG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++P+IG  L +    + +              + LL   A GY+ L EL+SR ++  Q
Sbjct: 59   AGLKPLIGSDLWLANPHDEEHP----------YRLTLLAMDATGYRNLTELISRGWVEGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SW+    +EGLI L+GG  G I R    +    A   L  +   F  R Y+
Sbjct: 109  RQGRALLERSWVMA-QSEGLIALSGGREGDIGRHLLSDHHAEARALLDEWNAAFPGRYYL 167

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     +       V LA   + P+VATN+  FL  ED+ AH+  +A+     +   
Sbjct: 168  ELTRTGRALEEECVHLSVDLAVETQTPVVATNDVRFLEREDFWAHETRVAIGEGKALDDP 227

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R R  T + YLK   EM  +FSD+PEALEN+V IA RC+  +++    LP +   E   
Sbjct: 228  RRERHYTEEQYLKTPEEMAELFSDIPEALENSVMIAARCNVDVRLGEIFLPEYGIPEGM- 286

Query: 303  IQKEEENELRNKAVAG---------LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
                +E   R  +  G            R  +           YR+RLDFEL++I +M F
Sbjct: 287  ---TQEEFFRKISHDGLTERLDFLYPAERYPRDGAEYAEIDARYRKRLDFELDIILQMGF 343

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFLIV DFIQWAK N++PVGPGRGSGAGS+ AYA  ITD+DPL + LLFERFLNP+R+
Sbjct: 344  PGYFLIVMDFIQWAKDNDVPVGPGRGSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERV 403

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPDFD+DFC ++RD VI YV  +YG   V+QI+TFG++ AKA +RDV RA   PYS  D
Sbjct: 404  SMPDFDVDFCMEKRDRVIEYVAERYGRNAVSQIVTFGTMAAKAVVRDVARAQGKPYSLGD 463

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            +L KLIP +    +  +AI D+ + +E   AD     + E++ KLEG+ R    HA G+V
Sbjct: 464  KLSKLIPFEVGMTL-GKAIEDEPQLKEFLEADEEAQEIWEMALKLEGITRGTGKHAGGVV 522

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL---- 589
            I    L+   P+  D        Q++   IE AGL+KFDFLGL+TLT++  +++ +    
Sbjct: 523  IAPTKLTDFSPLLCDEDGSGLRVQYDKNDIEDAGLVKFDFLGLRTLTIIDWAVEMVDKVR 582

Query: 590  -AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             A+    +++  IP DD  T+ +L    T  +FQLES GM++ ++ + PD +ED+IALV+
Sbjct: 583  AARGEEPLNIDAIPLDDVPTFDMLKKAETTAVFQLESRGMKELIKRLLPDSLEDMIALVA 642

Query: 649  LYRPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQL 701
            L+RPGP+ + +   + NRK+G+ +I   HP      + P+L+ T G+I+YQEQVMQIAQ+
Sbjct: 643  LFRPGPLQSGMVDDFINRKHGRAEISYPHPDYQHELLKPVLEPTYGIILYQEQVMQIAQV 702

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            ++GYSL +AD+LRRAMGKK  EEM KQ+  F+ G ++NGI K +A NIF+L+ KFA YGF
Sbjct: 703  MAGYSLGQADMLRRAMGKKKPEEMAKQRAGFMEGCAENGIDKDLAGNIFDLVEKFAGYGF 762

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NKSH+AAYA++SYQTAW+K HYP  F+AA ++ EMDN++K+    ++ R   + + PP+V
Sbjct: 763  NKSHSAAYALVSYQTAWLKAHYPGPFMAAVLSTEMDNLDKVVPLIEECRSLGLTVTPPNV 822

Query: 822  NTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNR 879
            N     F V  + R+ Y L AI+GVG      I+EA  A+  F  L DFC RVD +++N+
Sbjct: 823  NVGGYKFTVDAEGRVIYGLGAIRGVGEGPIGAIVEAREAEGDFRDLFDFCRRVDPQRMNK 882

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS---- 935
            R LE+L+ AGALD  G SR  L  SLD+  K A   + N+     ++F            
Sbjct: 883  RTLEALIRAGALDNLGPSRAVLAASLDDALKAAAQSQTNQNLGMMDMFGEAFANEPDDDA 942

Query: 936  --DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
                    +    +   R   E+  LG Y +GHP+D Y+  L +       +   +    
Sbjct: 943  ADAYADYRRVRDWSDKERLAGEKDTLGLYLTGHPIDEYEHELSRFVSTRIVDLKPSREPQ 1002

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +  A +VV  +  K+++G  + +VT  +     EA+ F
Sbjct: 1003 RV--AGLVVGVRTMKSKRGDTMAFVTLDDRTGRIEASLF 1039


>gi|325496116|gb|EGC93975.1| DNA polymerase III subunit alpha [Escherichia fergusonii ECD227]
          Length = 1150

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1037 (40%), Positives = 610/1037 (58%), Gaps = 38/1037 (3%)

Query: 17   HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
            HS YS+++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   +
Sbjct: 2    HSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFN 61

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            +          Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL
Sbjct: 62   V----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWL 111

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY- 195
             E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D   
Sbjct: 112  IEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 170

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYL 254
                 V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+
Sbjct: 171  YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 230

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
            ++  EM  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +
Sbjct: 231  RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKR 285

Query: 315  AVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            A  GLE RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N 
Sbjct: 286  AKEGLEERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNG 345

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI
Sbjct: 346  VPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVI 405

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A
Sbjct: 406  EHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKA 464

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D   
Sbjct: 465  FEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 524

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDH 606
              PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD 
Sbjct: 525  KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 584

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
            +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +R
Sbjct: 585  KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 644

Query: 665  KNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            K+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGK
Sbjct: 645  KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 704

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+
Sbjct: 705  KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 764

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYS 838
            K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V  D  I Y 
Sbjct: 765  KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYG 824

Query: 839  LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  
Sbjct: 825  IGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH 884

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R  L+ SL +  K A    K       ++F    +     + +          V  + E+
Sbjct: 885  RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGER 944

Query: 957  RVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
              LG Y +GHP++ Y   + +  G    ++   T RG     A +VV+ +   T++G+RI
Sbjct: 945  ETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRGNRI 1004

Query: 1016 GWVTFSEPAKEYEANFF 1032
            G  T  + +   E   F
Sbjct: 1005 GICTLDDRSGRLEVMLF 1021


>gi|319407174|emb|CBI80813.1| DNA polymerase III alpha subunit [Bartonella sp. 1-1C]
          Length = 1140

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 575/1022 (56%), Positives = 740/1022 (72%), Gaps = 8/1022 (0%)

Query: 17   HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
            HS+YSLLEGAL +  I+    +D+ PAIAITDTNNLF ALEFSQ   + GIQPIIGCQL 
Sbjct: 2    HSAYSLLEGALKIKQIIQHAISDRMPAIAITDTNNLFGALEFSQYCFSDGIQPIIGCQLA 61

Query: 77   IDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            ID  D    +   K    +  S IVL  ++  GY  L+ LVSR YL         I   +
Sbjct: 62   IDFGDENCNSPLTKLRHSSDYSSIVLFAASETGYSHLVRLVSRAYLDKNDTDLPHIKADF 121

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY 195
            L     EG+I LTGG  GPI+ A   +  + A +RL   KK+FGDRLY+ LQRH  YDR 
Sbjct: 122  LLR-HHEGIIALTGGPGGPINSALTEDKKERAIERLTYLKKIFGDRLYIELQRHGSYDRK 180

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
             E  +++LAYT+E+PLVATN + FL++E Y AHD LMAVA   VVS  +R RVT DHYLK
Sbjct: 181  VEEALIELAYTYEIPLVATNEAFFLNKEGYAAHDALMAVAEGKVVSNPNRKRVTLDHYLK 240

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ--KEEENELRN 313
            ++ EMVS+F DLPEALEN+VEIA RC     +  PILP FIE+  D     + E  EL +
Sbjct: 241  SQDEMVSLFFDLPEALENSVEIALRCHAYAPIRKPILPGFIERSADTSSVLEAEAKELLD 300

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            +A AGL++RL    +A+GY   DY QRL++E++VI RM+FSGYFLIV+DFI+WAK ++IP
Sbjct: 301  QAKAGLKMRLETIGLAEGYTIADYEQRLNYEISVITRMQFSGYFLIVSDFIKWAKAHDIP 360

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQ+RR+EVIRY
Sbjct: 361  VGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRVSMPDFDIDFCQERREEVIRY 420

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQAI 492
            VQ KYG ++VAQIITFG LQA+A LRDVGR L++PY  VD L KL+P  P   +   QAI
Sbjct: 421  VQQKYGCDQVAQIITFGKLQARAVLRDVGRVLEVPYRLVDYLTKLVPATPGSNIELAQAI 480

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
             D+ +F E +  DP + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVPMYRD RSD
Sbjct: 481  IDEPKFEEEKKKDPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVPMYRDPRSD 540

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
            +PVTQFNMK++E++GL+KFDFLGLKTLT+L+ ++DF+A++G KVDLS IP +D  TY ++
Sbjct: 541  MPVTQFNMKYVEQSGLVKFDFLGLKTLTVLKMAVDFVARKGTKVDLSHIPLNDEATYAMM 600

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN RK+ +E+I 
Sbjct: 601  SRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENISTYNIRKHKEEEIT 660

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
            SIHP ID ++KETQGVI+YQEQVMQIAQ L+GYSL EAD+LRRAMGKKI +EM +Q+ RF
Sbjct: 661  SIHPKIDHLVKETQGVIVYQEQVMQIAQELAGYSLGEADLLRRAMGKKIHKEMQEQRARF 720

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            +SGA   G+ K  A  IF+LLAKFADYGFNKSHA AYA++SY TA+MK H+PVEFLAASM
Sbjct: 721  VSGAVDGGLDKEQANVIFDLLAKFADYGFNKSHATAYAIVSYHTAYMKAHHPVEFLAASM 780

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            T +M N +K+  F ++A +  I+++ P V T    F+VG+N IYYSL+A+KGVG     H
Sbjct: 781  TYDMTNTDKLNDFRREALRLGIEVIAPCVQTSHRIFEVGENCIYYSLSAVKGVGDMVVDH 840

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            I+    DKPF  LEDFC R+D + +N+R +ESL++AGA DCF  +R  LL SL  +   A
Sbjct: 841  IVACRGDKPFRDLEDFCERIDPRIVNKRAMESLIYAGAFDCFNVAREVLLASLVTLNARA 900

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              +  N ++   +IF    G     I L + S  + + +   E +V+GFYFS HPL  Y+
Sbjct: 901  LRILDNNSSGQVDIFEMVGGLKEPLI-LSQASPWSVAEKLHYEFQVIGFYFSAHPLSEYQ 959

Query: 973  PILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L K  ++ +    A+++G     RLA  VV+KQ +KT+ G ++G + FS+ + +YEA 
Sbjct: 960  DVLIKKRVQTWNNFAASVKGGATAARLAGTVVAKQIRKTKSGKKMGVIQFSDTSGQYEAV 1019

Query: 1031 FF 1032
             F
Sbjct: 1020 IF 1021


>gi|332180545|gb|AEE16233.1| DNA polymerase III, alpha subunit [Treponema brennaborense DSM 12168]
          Length = 1179

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1037 (34%), Positives = 566/1037 (54%), Gaps = 25/1037 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS YSLL+GA  +  ++ +       A+A+TD  N+F AL F Q     GI+P
Sbjct: 28   DFVHLHVHSDYSLLDGAAKVKTLVARAKELGMSALALTDHGNMFGALRFEQLCHKEGIKP 87

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC+  +      +  ++G         ++L+    EGY+ L+ L SR Y  +      
Sbjct: 88   LVGCEFYVAGSSRHE--HKGTEQGNKYYHLILIAKNVEGYRNLMMLTSRSYT-EGMYYKP 144

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            RI    ++E  + GL+ L+   +G + +    N ++ AE  +  ++ +FG +  ++ LQ 
Sbjct: 145  RIDEELIREY-SGGLVCLSACLAGQLPQLLLNNQNKEAEDLVRRYRDIFGAENYFIELQD 203

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +     +++ +A    +P+V TN+  +  +EDY A DVL+ +          R +
Sbjct: 204  HGIAQQKEVAPKLIDIARKLGVPMVVTNDIHYCLKEDYIAQDVLVCIGTKKTRDDPRRMK 263

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK--ECDDIQ 304
                + Y+K   EM  +F   PE +ENT  +A  C   +   +    +      +     
Sbjct: 264  FEGTEFYMKTGEEMAQLFPAYPEMIENTKRVADMCDLTIPQFSTKELKDCLPVYQIPPEF 323

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K +++ +R+    GLE R  +         ++ RQR ++EL +I +M FSGYFLIV DFI
Sbjct: 324  KTQDDYVRHLVYKGLEKRYPE-------ITEEIRQRAEYELGIIFQMGFSGYFLIVWDFI 376

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAK+N+IPVGPGRGSGAGS+ AYA+TITDIDP RF+L+FERFLNP+R+SMPDFD+D C 
Sbjct: 377  NWAKQNDIPVGPGRGSGAGSLVAYAMTITDIDPFRFNLIFERFLNPERISMPDFDVDICY 436

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + R +VI Y + KYG  +V  I+TFG+L+AKA ++DV R L +P S+V+ L KL+P+ P 
Sbjct: 437  EGRQDVIEYTRRKYGDPQVGHIVTFGTLKAKAVIKDVARVLDIPLSEVNILTKLVPDGPK 496

Query: 485  HPVS-----LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
              +       + I    +       DP    L ++  KLE   R+ S HA+GIVIG   L
Sbjct: 497  VHLKDAFEVNEKIPGSGQLAP-YRNDPRYKELFDLCFKLEDNNRNTSLHASGIVIGKSKL 555

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
             +  P+Y+D ++     Q+ M  IE  GL+K D+LGLKTLTL++ +   + +R       
Sbjct: 556  PEWAPVYKDSKTGKVAVQYTMDIIEPCGLVKMDYLGLKTLTLIKYAERIIRKRPGYEQFR 615

Query: 600  LIPF--DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                   D +T+ L     T  +FQ ES GM++ L+  QP  +EDI+AL +LYRPGP+D 
Sbjct: 616  ADEVSETDEKTFDLFCAGQTSAVFQFESPGMQKILKQAQPRRLEDIVALNALYRPGPMDY 675

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y   K    KI    P +  +L+ET GV++YQEQVMQ+AQ ++GYSL  AD+LRRAM
Sbjct: 676  IPQYIEGKFDSSKITYPDPCLKSILEETYGVMVYQEQVMQVAQRIAGYSLGGADMLRRAM 735

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  E M  +K +FI GA KNG +   A +IFE++  FA YGFNKSHAAAY+V++Y+TA
Sbjct: 736  GKKKVEVMAAEKTKFIEGAVKNGFTAEHAADIFEIMIPFAGYGFNKSHAAAYSVVAYRTA 795

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K ++P EF+AA++T E+ + +K+ ++  + R   ++I PP +N     F V D RI +
Sbjct: 796  YLKANFPAEFIAANLTNEITSTDKLPEYITEGRSMGLEIDPPDINRSDKVFDVVDGRIVF 855

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L  IKG+G   A  I+     + P+    +F  RV++  +N++ +E L+  GA D    
Sbjct: 856  GLLGIKGLGEAAADAIIAERKANGPYTDFMNFLDRVNTHDVNKKAIEVLIKTGAFDKLDK 915

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  L  +++    YA+  +        ++F             E+            E+
Sbjct: 916  NRATLTANMERAIDYAESKKSAGRFGQVSLFEDSGVQEFADFKYEEQPEIPVMEMLNMEK 975

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             ++G Y SGHPLD Y+  ++               G   ++  ++ + +   T+KG+++ 
Sbjct: 976  ELIGCYVSGHPLDKYRETIKNAATVTSATMGRAQEGKQYQIIGLLKNIRTITTKKGAQMA 1035

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +    +    ++  FFP
Sbjct: 1036 FAQLEDLNGSFDLTFFP 1052


>gi|126667580|ref|ZP_01738550.1| DNA polymerase III, alpha subunit [Marinobacter sp. ELB17]
 gi|126628006|gb|EAZ98633.1| DNA polymerase III, alpha subunit [Marinobacter sp. ELB17]
          Length = 1161

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1051 (38%), Positives = 596/1051 (56%), Gaps = 42/1051 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    +FVHL++HS +SL++G + +  ++ ++     PA+ +T+ +N+FS + F + A  
Sbjct: 1    MTAQ-TFVHLRIHSEHSLVDGLVRVKPLIKRVVELGMPAVGLTEQSNMFSLVRFYKAALG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG  L  +  D  +          +     LL S  +GY  L E+VS  Y   Q
Sbjct: 60   AGVKPIIGADLWFENPDEPE----------SPFRTTLLASNNDGYLNLTEIVSLGYTEGQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E  ++GLIML+GG  G + +A   +  ++A +R   ++ L+    Y+
Sbjct: 110  RFGKPIIKREWL-EARSQGLIMLSGGKMGDVAKAMLSDKPKLARERACYWRDLYPGSFYL 168

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR     D       V LA    LP+VATN+  F+  ED+EAH+  + +  S  +   
Sbjct: 169  ELQRTGRAGDEDCLHLNVALAAELGLPVVATNDVHFIYAEDFEAHEARVCIGESRTLDDP 228

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R +   +L++  EM+ +F+D+PEA+ENT+ IARRCS  +++    LP +   E   
Sbjct: 229  RRDRRFSDQQHLRSAEEMIELFADIPEAVENTLAIARRCSVTVRMGEYFLPNYPVPEGM- 287

Query: 303  IQKEEENELRNKAVAGLE----VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  +  R  +  GLE      L +         Q Y  RL FEL++I +M F GYFL
Sbjct: 288  ---TMNDYFRRVSEEGLEDRLAKTLPKDDPDYDSKRQAYYDRLKFELDIIIQMGFPGYFL 344

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI+WAK N +PVGPGRGSGAGS+ AYA  ITD+DPL++ LLFERFLNP+R+SMPDF
Sbjct: 345  IVMDFIKWAKNNGVPVGPGRGSGAGSLVAYAQLITDLDPLQYDLLFERFLNPERVSMPDF 404

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC + RD VI YV  KYG E V+QIITFG++ AKA +RDV R     Y   D+L K+
Sbjct: 405  DVDFCMEGRDRVIAYVAEKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKM 464

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP +    +  +A+  +   +E    D     + E++ KLEG+ R+A  HA G+VI    
Sbjct: 465  IPFEVGMTL-AKAVEQEPSLKEFLAQDEEAQEIWEMAIKLEGVCRNAGKHAGGVVIAPTK 523

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-- 596
            ++   P+Y D      VTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R  K   
Sbjct: 524  ITDFSPLYCDDDGGSLVTQFDKNDVEDAGLVKFDFLGLRTLTIIDWALKMINPRREKRGL 583

Query: 597  ---DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
               D+S IP DD  ++ +L    T  +FQLES GM+  +  +QPD +ED+IALV+L+RPG
Sbjct: 584  KPLDISEIPLDDPASFVMLKKAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPG 643

Query: 654  PIDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+ + +V       +  +          +  + P+L+ T GVI+YQEQVMQIAQ++ GYS
Sbjct: 644  PLQSGMVDDFIDRKHGKQPMSFPHPDYQYEGLKPVLEPTYGVILYQEQVMQIAQVMGGYS 703

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQK+ F+ G + N I K +A NIF+L+ KFA YGFNKSH+
Sbjct: 704  LGNADMLRRAMGKKKPEEMAKQKQFFLDGCAGNNIDKALAENIFDLVEKFAGYGFNKSHS 763

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+K HY  EF+AA +T +M N +K+    ++ R   + ++ P V+T   
Sbjct: 764  AAYALVSYQTLWLKAHYTAEFMAAVLTADMQNTDKVVTLVEECRSLKLDLVLPDVSTSEY 823

Query: 827  DFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
             F    D ++ Y L AIKG+G      I+ A   + PF  L DFC RVD KK+N+R LE+
Sbjct: 824  AFTANDDGQVVYGLGAIKGLGEGPIDSIVTARKENGPFTDLFDFCRRVDLKKVNKRALEA 883

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            ++ AGA+D  G  R QL+ S++     A    +N      ++F     T +D       +
Sbjct: 884  MIRAGAMDKLGAGRAQLMASIEKAILQAGQQSRNEAAGMVDMFGDMLETAADVDAYTDVA 943

Query: 945  ---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                     R + E+  LG Y +GHP D Y+  +R+       +       +  R+A +V
Sbjct: 944  DIREWPEKKRLKGEKDTLGLYLTGHPFDEYEREVRRFVRSSIADLK--PNKSPQRVAGLV 1001

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V+++  KTR GS + ++T  + +   EA  F
Sbjct: 1002 VAQRTMKTRTGSTMCFITLDDRSGRIEATLF 1032


>gi|56695561|ref|YP_165911.1| DNA polymerase III subunit alpha [Ruegeria pomeroyi DSS-3]
 gi|56677298|gb|AAV93964.1| DNA polymerase III, alpha subunit [Ruegeria pomeroyi DSS-3]
          Length = 1187

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 503/1078 (46%), Positives = 690/1078 (64%), Gaps = 68/1078 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL++H+ YSLLEGA+ L  +         PA+A+TDTNNLF+ALEFS  A  
Sbjct: 1    MSSNPRFIHLRLHTEYSLLEGAVRLKKLPALCDKMGMPAVAVTDTNNLFAALEFSVGASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPIIGCQLD+           G+ P P  P +VLL     GY+ L++L S +Y +D+
Sbjct: 61   AGIQPIIGCQLDLAY----VAAMPGERPKPPAP-LVLLAQNEAGYENLMKLNSCLY-VDK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G Q  ++ L  L+ +G +GLI L+GG  GP+ R         AE  +     +F DR Y+
Sbjct: 115  GGQLPQVTLEELEALG-DGLICLSGGPDGPVGRLLQAGQRPAAEALVDRLAAIFADRFYI 173

Query: 185  NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       +R  E   V++AY   LPLVATN+  F     YEAHD L+ +A   
Sbjct: 174  ELQRHPGEGGAPEAERLTERGHVEMAYAKGLPLVATNDVYFPEAGMYEAHDALICIADGA 233

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+T  HYLK+  EM ++F+DLPEA+ENTVEIARRC+F+            +
Sbjct: 234  YVDQAEGRRRLTAQHYLKSPQEMATLFADLPEAIENTVEIARRCAFMAY--------RRD 285

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    +E  ELR +A  GL+ RLA   I     A+DY++RLDFEL++I  M F GYF
Sbjct: 286  PILPKFADDEVVELRRQANEGLQARLA--VIPHAVSAEDYQKRLDFELDIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS++  + D+ R RE    +  VDRLL   Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALKDEPRLREEARNEEVVDRLLTYGQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G  +
Sbjct: 524  RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFKSGRPL 583

Query: 597  D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                               ++ IP DD  TY L +   T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  HVAADGRQLYDPAEGAENQINAIPLDDVPTYKLYSAAKTVAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI VY   KNG  +I S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPVYCEVKNGLREITSVHPLIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKIKE MD ++ +F +GA++NG+    A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFETGAAENGVDAKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ R+   +  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLGLPYV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-------------------- 857
            PP VN     F V    + Y+L A+K VG    R ++E                      
Sbjct: 824  PPCVNRSQATFDVVGGELVYALGALKNVGVEAMRLVVEGRQGAHPPEPASSRDAARRPDR 883

Query: 858  -ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
              ++PF +L DF  RVD KK+ +R LE +  AGA D    +R ++  S++ +  Y+  + 
Sbjct: 884  AEERPFVTLFDFARRVDLKKVGKRPLEMMARAGAFDQLDPNRRRVFDSIEALMAYSGAIF 943

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
            + +++   ++F  E G    +  L +      + R   E + +GFY SGHPLD Y P L+
Sbjct: 944  EQKSSNQVSLFG-EAGDDLPEPRLAQAPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALK 1002

Query: 977  KMGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + G+   +E     R   +  ++A +V  +Q++K+ +G+R  +   S+P   +E   F
Sbjct: 1003 RKGVLTLDEVTEQARSGPVLAKMAGVVAGRQERKSARGNRFAFAQMSDPTGAFEVTLF 1060


>gi|168181975|ref|ZP_02616639.1| DNA polymerase III, alpha subunit [Clostridium botulinum Bf]
 gi|237796833|ref|YP_002864385.1| DNA polymerase III DnaE [Clostridium botulinum Ba4 str. 657]
 gi|182674724|gb|EDT86685.1| DNA polymerase III, alpha subunit [Clostridium botulinum Bf]
 gi|229263138|gb|ACQ54171.1| DNA polymerase III, alpha subunit [Clostridium botulinum Ba4 str.
            657]
          Length = 1185

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1071 (34%), Positives = 594/1071 (55%), Gaps = 55/1071 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            EK P +V L  H+ YSLL+ +  +++++ +       +IAITD   ++  ++F ++A   
Sbjct: 8    EKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKEAIKQ 67

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PIIGC++ +  +         +        +VLLV    GY+ L+E+VS+   ++  
Sbjct: 68   GIKPIIGCEIYVASKSMYIKQQDKEN---ETHHLVLLVKNEIGYKNLMEIVSKAS-VEGF 123

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                R+   +L++  +EGLI L+    G +       + + AE+  L +K +F +  Y+ 
Sbjct: 124  YYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAEEVALIYKDIFKEGFYLE 182

Query: 186  LQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ H   ++      +V+++   ++PLVATN+  ++ +EDY++HD+L+ +     V +++
Sbjct: 183  LQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTVEEEN 242

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R  +   YLK+  EM   FS +PEALENTV+I+  C+F    H   LP+F  +E  D 
Sbjct: 243  RMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEEGVDP 302

Query: 304  QKEEENELRNKAVAG--LEVRLAQGAIAKGYHAQDYR-------------QRLDFELNVI 348
                   LR     G  L   + +  I K +   +               +RL++EL++I
Sbjct: 303  Y----EYLREICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNYELSII 358

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M +  YFLIV DFI++A +  I  GPGRGS AGS+ AY L IT IDP++++L+FERFL
Sbjct: 359  KQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFL 418

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NPDR+SMPD D DFC +RR EVI YV  KYG   V+QIITFG++ A+A +RDVGRA+  P
Sbjct: 419  NPDRISMPDIDSDFCYERRGEVIDYVVEKYGKANVSQIITFGTMAARACIRDVGRAMNYP 478

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            Y++VDR+ K+IP      +  +A+  +   +EA   +  V  L+++++ LEGL RH STH
Sbjct: 479  YAEVDRIAKMIPTVLNITI-NKALGLNPELKEAYDNEERVKELIDVARALEGLPRHTSTH 537

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAG+VI  +PL   VP+ ++   +  VTQF M  +E+ GL+K DFLGL+TLT+++ ++  
Sbjct: 538  AAGVVIASQPLVNYVPLQKN--EESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVRI 595

Query: 589  LAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            + +   + +DL  I F+D E Y ++    T+G+FQLES+GM   ++ ++PD +EDIIA  
Sbjct: 596  IRENKGIDIDLDTIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGN 655

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            SLYRPGP+  I  Y   KN   KI      ++P+L  T   I+YQEQVMQI + L+GYS+
Sbjct: 656  SLYRPGPMAEIPTYIANKNNPSKIKYSTQKLEPILSVTYNCIVYQEQVMQIVRDLAGYSM 715

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADY 759
              +D++RRAM KK  + M+++++ FI         G   NGI + +A N+F+ +  FA Y
Sbjct: 716  GRSDLVRRAMSKKKHDVMEQERKSFIYGNEKEGVKGCINNGIDEKVANNLFDSMMDFASY 775

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSHAAAYAV+S+QTA++  +YP EF+AA +     + +++  +   A    IQI+ P
Sbjct: 776  AFNKSHAAAYAVVSFQTAYLMRYYPTEFIAAMLNSVKGDSDRVSFYVNFAETLGIQIIAP 835

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLN 878
            ++N    +F V DNRI + L A+K VG     +I+        F  L DF ++VD+  +N
Sbjct: 836  NINESYSNFTVKDNRIIFGLTAVKNVGERGIDNIVLSREQKGKFIDLSDFFNKVDTSIIN 895

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-- 936
            +R++ESL+  GA DC    R ++L   + I    Q  +++      N+F           
Sbjct: 896  KRLVESLIKTGAFDCLNVYRSKMLAVFEKIMDGIQKQKRSNIEGQVNLFMDIMDNKESSM 955

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------- 987
             I        +     + E+ + G YFSGHPL+ Y+  L+        + +         
Sbjct: 956  DIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIITKESLEGNL 1015

Query: 988  -----ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 +   G+ + +  M+    +K TR    + ++   +     E   FP
Sbjct: 1016 VDTMNSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066


>gi|312959407|ref|ZP_07773924.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens WH6]
 gi|311286124|gb|EFQ64688.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens WH6]
          Length = 1173

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1065 (39%), Positives = 600/1065 (56%), Gaps = 57/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  
Sbjct: 1    MP--ASFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI G  L +  +D          P   +  I LL     GY+ L EL+SR ++  Q
Sbjct: 59   AGIKPICGADLWLSNKD----------PDNALSRISLLAMNGVGYRNLTELISRGFIDGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
               SV I   W+ E  +EGLIML+    G I  A    + Q AE     + ++F DR Y+
Sbjct: 109  RNGSVIIEREWVAE-ASEGLIMLSAAKEGEIGLALLGGNPQEAEVLAKEWMQVFPDRFYL 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR +R  D       V LA     PLVATN+  F+ +ED+EAH+  + +     +   
Sbjct: 168  EVQRTNRPNDEEHLHAAVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDP 227

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R +  + + YLK+  EM  +FSDLPEALEN+VEIA+RC+  +++    LP F   +   
Sbjct: 228  RRSKNYSEEQYLKSAEEMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMT 287

Query: 303  IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            I    +   R  +  GLE R                 Q Y  RL+FEL++I +M F GYF
Sbjct: 288  I----DEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 344  LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K
Sbjct: 404  FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSK 463

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP +    +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI   
Sbjct: 464  MIPFEVGMTLE-KAYEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPT 522

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596
             L+   P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV 
Sbjct: 523  KLTDFSPIYCDEEGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVG 582

Query: 597  ----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                D++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RP
Sbjct: 583  EAPLDIAFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642

Query: 653  GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V +                   +  + P+L  T G+I+YQEQVMQIAQ+++GY
Sbjct: 643  GPLQSGMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  FI G + N I   +A NIF+L+ KFA YGFNKSH
Sbjct: 703  TLGGADMLRRAMGKKKPEEMAKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSH 762

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAY ++SYQTAW+K HYP  F+AA ++ +M N +K+    ++ R   +++  P VN   
Sbjct: 763  SAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASE 822

Query: 826  VDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F V D  RI Y L AIKGVG      I EA  D PF  L DFC+RVD K++N+R L+ 
Sbjct: 823  FKFTVNDEGRIIYGLGAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKRINKRTLDG 882

Query: 885  LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+ +GALD  G                +R  LL +++   K A+   +   + H ++F  
Sbjct: 883  LIRSGALDRLGPYFHDEPKAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGG 942

Query: 930  E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +          K        R + E+  LG Y +GHP+D Y+  +R+   +   +  
Sbjct: 943  LFVEEDADVYANHRKAKDLTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +A M+++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1003 PARDTQ--TVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045


>gi|91775600|ref|YP_545356.1| DNA polymerase III, alpha subunit [Methylobacillus flagellatus KT]
 gi|91709587|gb|ABE49515.1| DNA polymerase III, alpha subunit [Methylobacillus flagellatus KT]
          Length = 1149

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1039 (40%), Positives = 618/1039 (59%), Gaps = 35/1039 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K PSF+HL+ HS YS+++G + + + + +  ADQ PA+A+TD +NLF A++F + A  
Sbjct: 1    MSK-PSFIHLRCHSEYSVVDGTVRIGDYVKQAVADQMPALALTDLSNLFGAIKFYKAARG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++P+IG  + ++ +                  ++LL  +  GY RL EL+SR +L +Q
Sbjct: 60   KGVKPLIGADIWLENESKRDQP----------YRLLLLCHSHVGYLRLCELLSRAFLHNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I   WL+E GTEGLI+L+G  +G I +A    +   A+     +  LF  R Y+
Sbjct: 110  YRGRAEIKREWLREGGTEGLILLSGAMAGDIGQALLQGNFSQAQTLAGEWAALFPQRFYI 169

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR          +  + LA   ELP+VAT+   F++ +D++AH+  + +A   V++  
Sbjct: 170  ELQRAGHPQQEAYIASALALASELELPVVATHPVQFMAPDDFKAHEARVCIAEGYVLADN 229

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  TP+ Y K++++M  +F+D+PEAL N+VEIA+RC+  L +    LP+F     + 
Sbjct: 230  RRPKLFTPEQYFKSQAQMAELFADIPEALANSVEIAKRCNLTLTLGKNYLPQFPTPNGES 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359
            +    +  L  +A AGLE RL      +G       +Y  RL FE N+I +M F GYFLI
Sbjct: 290  L----DEYLVAQAKAGLEERLKVLFPDEGQREAKRPEYEARLQFETNIIIQMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DP+R++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPMRYALLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ+ RD VI YV+ KYG + V+QI TFG++ AKA +RDVGR L +P++ VD + KLI
Sbjct: 406  IDFCQEGRDRVIDYVKRKYGLDAVSQIATFGTMAAKAVIRDVGRVLDLPFTFVDSVAKLI 465

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            PN+    +S   +  + + +E R  +  V  LLE++ +LEGL R+   HA G++I    +
Sbjct: 466  PNELGISLSEA-LEKEPQLKERREQEEEVAELLELALRLEGLTRNIGMHAGGVLISPGKI 524

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            S   P+Y     +  V+Q++   +E  GL+KFDFLGL+TLT+L  +L+    +  +  L 
Sbjct: 525  SDFSPVYCQASGESVVSQYDKDDVEAVGLVKFDFLGLRTLTILAMALESANLQRAEHGLE 584

Query: 600  LI-----PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +     P DD  +Y LL    T  +FQLES GM+  L+  +PD  EDIIALV+LYRPGP
Sbjct: 585  PLDFETLPIDDKASYQLLKAANTTAVFQLESRGMKDMLKQAKPDVFEDIIALVALYRPGP 644

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +  RK+G +++   HP  +P+LKET G+++YQEQVMQIAQ+++GYSL  AD+LR
Sbjct: 645  MDLIPDFCRRKHGLQRVEYPHPATEPILKETYGIMVYQEQVMQIAQVVAGYSLGGADLLR 704

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ+  FI GA KNG S+  A  +F+L+ KFA YGFNKSHAAAYA+++Y
Sbjct: 705  RAMGKKKPEEMAKQRSIFIEGAVKNGTSEKQAGELFDLMEKFASYGFNKSHAAAYALVAY 764

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDN 833
            QTA++K HYP  FLAA+M+ +M+N + I  F  D     ++++PP +N     FK +   
Sbjct: 765  QTAYLKAHYPAAFLAATMSADMNNTDNIHLFYDDCIFNGLEVLPPDINASEYRFKPINAK 824

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            +I Y L AIKG G      I+ A     PF  L DFCSR+D +K+NRRV+ESL+ AGA D
Sbjct: 825  QILYGLGAIKGTGWAAIELILAARQEGGPFKDLFDFCSRLDLRKVNRRVIESLIRAGAFD 884

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                +R  LL  +      A+  +    +  +++F     +      L +        R 
Sbjct: 885  KLEPNRAALLAGVSLAISAAE--QSGAASGQDSLFGSVIDSAVH--VLPETPPWTEKQRL 940

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LGFYFSGHP   Y+  +                     LA +V+  + + T +G
Sbjct: 941  QEEKAALGFYFSGHPYADYQKEVATFVRSNLANLK--PSDQPQLLAGVVMGVRIRMTGRG 998

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
              +  VT  + A   +   
Sbjct: 999  K-MAIVTLDDMAGRVDIVV 1016


>gi|66044606|ref|YP_234447.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. syringae
            B728a]
 gi|63255313|gb|AAY36409.1| DNA polymerase III alpha subunit [Pseudomonas syringae pv. syringae
            B728a]
          Length = 1173

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1065 (38%), Positives = 600/1065 (56%), Gaps = 57/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  
Sbjct: 1    MP--ASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PI G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q
Sbjct: 59   SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   W+ +  +EG+I L+    G I  A    +   A++ L  + ++F DR Y+
Sbjct: 109  RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYI 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +   
Sbjct: 168  EVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDP 227

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R    +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   
Sbjct: 228  RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287

Query: 303  IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            I    +   R  +  GLE R                 Q Y  RL+FEL++I +M F GYF
Sbjct: 288  I----DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 344  LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K
Sbjct: 404  FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP +    +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI   
Sbjct: 464  MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPT 522

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592
             L+   P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +      
Sbjct: 523  KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +D++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RP
Sbjct: 583  EEPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642

Query: 653  GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V +               +   +  + P+L  T G+I+YQEQVMQIAQ+++GY
Sbjct: 643  GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH
Sbjct: 703  TLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSH 762

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAY ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT  
Sbjct: 763  SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822

Query: 826  VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F V  D RI Y L AIKGVG      I +A  + PF  L DFC+RVD K++N+R L+ 
Sbjct: 823  FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDG 882

Query: 885  LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+ +GALD  G                +R  LL +L+   + A+   ++R + H ++F  
Sbjct: 883  LIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGG 942

Query: 930  E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +          K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +  
Sbjct: 943  LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|203288019|ref|YP_002223034.1| DNA polymerase III, subunit alpha [Borrelia recurrentis A1]
 gi|201085239|gb|ACH94813.1| DNA polymerase III, subunit alpha [Borrelia recurrentis A1]
          Length = 1144

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/1034 (38%), Positives = 600/1034 (58%), Gaps = 22/1034 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL VHS +SLL+GA  + +I+ K        IA+TD  NLF A++F ++A  
Sbjct: 1    MNLKAKFVHLHVHSDFSLLDGAAKIVDIVSKAKEYNMSHIALTDHGNLFGAIKFYREAKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  +   + LK   +          ++LL    +GY+ L++L S  YL + 
Sbjct: 61   AGIKPIIGIEAYMS--NTLKYIKKNDEFGKPYYHLILLAKNEQGYKNLLKLTSVSYL-EG 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 R+    L +  +EGLI ++    G I +    N    A+  +L FK  FGD  Y+
Sbjct: 118  FYYRPRMDRDDLAKY-SEGLICMSACIGGIIPQLILSNRFDDAKNEILWFKNTFGDDFYL 176

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH    +     +++  +   ++ L  +N+S ++++ED  A D+++ +      S  
Sbjct: 177  ELQRHGIKQQDIVNEKLIAYSKELDVQLSVSNDSHYVNKEDATAQDIIVCIGTGAKRSDS 236

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRFIEKECD 301
             R ++ T + YLK+  EM  +F DLPEAL NT++IA +C+ F ++   PI P +   E  
Sbjct: 237  GRFKMETDEFYLKSPEEMCELFKDLPEALANTLKIAEKCNDFEIKFPGPIFPEYHIPEEF 296

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D Q      L +  + GL+ R A           + ++R  +EL+ I  M F  YFLIV 
Sbjct: 297  DTQG---QYLEHLTLEGLKFRYAN-------ITDNIKERAFYELSTIINMGFEAYFLIVW 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++A  N+IPVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDID
Sbjct: 347  DFIKFAHDNDIPVGPGRGSGAGSIVAYALRITDVDPLKYNLLFERFLNPERVSMPDFDID 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC + RDEVI+YV  KYG ++VAQIITFG+L+ KA  +DVGR L +P+ Q + + KLIP+
Sbjct: 407  FCFEGRDEVIKYVTKKYGEDKVAQIITFGTLKPKAVFKDVGRVLDIPFVQSNEITKLIPD 466

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P   VSL+ +  D   ++     P  + L+E +  LEG+ RHASTHAAGIVI    L+ 
Sbjct: 467  GP--KVSLREVLKDKVLKKYLNKGPVYNELMEAALVLEGMNRHASTHAAGIVIARTSLTD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
             VP+Y+D + D   TQ+ M  +E  GL+K DFLGLKTLTL++ +   +        ++ I
Sbjct: 525  YVPLYKDYKQDTVSTQYTMDLLEDCGLVKMDFLGLKTLTLIKNAEKLIKITDPDFSIATI 584

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
               D +T+ +L+   +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  +
Sbjct: 585  SDSDAKTFKMLSEGRSTSVFQFESEGMQQILKDSKPDNIEDLIALNALYRPGPMQFIPQF 644

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K G ++I   HP +  +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK 
Sbjct: 645  VAAKTGAKRIKYPHPDLTEVLKPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKK 704

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            ++EM++ K  FI GA + G  +T+A +IFELL  FA YGFNKSHAAAY++I+YQTA++K 
Sbjct: 705  EDEMNRMKVDFIKGALEKGYDETLASDIFELLKPFAGYGFNKSHAAAYSLIAYQTAYLKA 764

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +YP  F+AA++T E++N EK+  + ++ +   I ++ P +N    DF+V  + I Y L  
Sbjct: 765  NYPASFMAANLTNEINNTEKLSYYIEETKSMGINVLRPDINQSFKDFRVVGSDISYGLNG 824

Query: 842  IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK +G      I+     +  + S EDF  RVD K +N++ LE+ + +G  D  G +R  
Sbjct: 825  IKNIGELMVDLILNERQENGEYKSFEDFIKRVDKKVINKKFLEASIKSGLFDSLGQNRRT 884

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L+++LD +  +    +  +     ++FA  +    +      F   +       E+ +LG
Sbjct: 885  LIENLDKLIAFVLENKNAKKQGQNSLFA-SQNILEETFNYNLFEEYSYLELLGFEKELLG 943

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGWVT 1019
            FY SGHPLD YK  L         + +A+ R   ++ A  +   +    +K + R+ +  
Sbjct: 944  FYVSGHPLDPYKSELEFFTNFNVVKDLASRRNTVVKFAGSLNFIRVVHLKKNNARMAFGI 1003

Query: 1020 FSEPAKEYEANFFP 1033
                    E   FP
Sbjct: 1004 VENFEGSIEIVVFP 1017


>gi|99080341|ref|YP_612495.1| DNA polymerase III subunit alpha [Ruegeria sp. TM1040]
 gi|99036621|gb|ABF63233.1| DNA polymerase III alpha subunit [Ruegeria sp. TM1040]
          Length = 1166

 Score =  772 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 497/1057 (47%), Positives = 690/1057 (65%), Gaps = 47/1057 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+ H+ YSLLEGA+ L  + D   A+Q PAIAITDTN++F+ALEFS     
Sbjct: 1    MTAHPRFIHLRTHTEYSLLEGAVRLKKLPDLCKANQMPAIAITDTNSMFAALEFSVTLSG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPIIGCQ+D+      + ++ G+ P    P +VLL     GY+ L+ L S +Y+ + 
Sbjct: 61   AGIQPIIGCQVDLT----FEKSDPGEKPKFPAP-VVLLAQDETGYEHLMRLSSCLYVDNG 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G Q  ++ L  L E    GLI LTGG  GPI +         AE  +   K +F DRLYV
Sbjct: 116  G-QLPQVSLEEL-EANAGGLICLTGGPEGPIGKLLQQGQRPAAETLMQRLKGMFPDRLYV 173

Query: 185  NLQRHRGYDRYRESQVV------QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G D   E++ +      ++AY  +LPLVATN+  F   E YEAHD L+ +A   
Sbjct: 174  ELQRHPGEDGQPEAETLTERGHVEMAYAMDLPLVATNDVYFPKTEMYEAHDALICIAEGA 233

Query: 239  VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+T  HY K++ EM+++F+DLPEA+ENTVEIA+RC+F+            +
Sbjct: 234  YVDQAEPRRRLTAQHYFKSQEEMIALFADLPEAIENTVEIAQRCAFMAY--------RRD 285

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    +E +ELR +A  GL+ RLA   I      + Y++RLDFEL +I  M F GYF
Sbjct: 286  PILPKFADDEVDELRRQANEGLQQRLA--VIPHAVPVEKYQERLDFELGIIESMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+W K+  IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWGKEQGIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMP+ QVDRL K
Sbjct: 404  FDIDFCMDRREEVIKYVQQKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPFGQVDRLSK 463

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS++  + D+ R  E    +P VDRLL   Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALQDEPRLAEEARNEPVVDRLLTYGQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT+++ ++  + + G  +
Sbjct: 524  RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIENAMKLIFKSGRDL 583

Query: 597  DL------------------SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
             +                  +LIP DD  TY+L +   T+ +FQ+ES+GM  AL+ M+P 
Sbjct: 584  HIGADGTELYEPAEGAENQINLIPLDDEVTYNLYSRAKTVAVFQVESTGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI VY   KNG+ +I S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPVYCEVKNGQREITSVHPLIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKIKE MD ++ +F  GA++NG+ K  A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVDKKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   EK+  + ++ ++   +  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTEKLAVYFEEVKKGLQLPYV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
             P +N     F V D  + Y+L A+K VG      I+ A  DKPF +L DF  RVD K++
Sbjct: 824  APDINRSLATFDVVDGELVYALGALKNVGVEAMNMIVTARGDKPFVNLYDFARRVDLKRV 883

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             +R LE L  AGA D    +R ++ +SL+ + +Y+  +++ + +   ++F  E G    +
Sbjct: 884  GKRPLEMLARAGAFDVLDPNRRRVFESLEGLVQYSAAIQEQKNSNQVSLFG-EAGDDLPE 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--I 995
              +        + R   E + +GFY +GHPLD Y P L++  +   +E +A         
Sbjct: 943  PRMAGVPDWLPAERLSEEFKAIGFYLTGHPLDDYMPALKRKDVMTLDEVMAKAERGPFMA 1002

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++A +V  +Q++K+ +G+R  +   S+    YE   F
Sbjct: 1003 KMAGVVAGRQERKSARGNRFAFAQLSDTTGAYEVTIF 1039


>gi|85059906|ref|YP_455608.1| DNA polymerase III subunit alpha [Sodalis glossinidius str.
            'morsitans']
 gi|84780426|dbj|BAE75203.1| DNA polymerase III alpha subunit [Sodalis glossinidius str.
            'morsitans']
          Length = 1160

 Score =  772 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1049 (39%), Positives = 604/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL+VHS YS+++G + +  ++ K AA   PA+AITD  NL   ++F   A  
Sbjct: 1    MAE-PHFIHLRVHSDYSMIDGLVKIGPLVKKAAALHMPALAITDFTNLCGLVKFYGSAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q       +  + +L +   GYQ L  L+S  Y    
Sbjct: 60   AGIKPIIGADFFV----------QSGMLGDELAELTILAANNVGYQHLTLLISDAYKRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E   EGLI+L+G   G + +     +    E+ L  +++ F DR Y+
Sbjct: 110  GAAGPVIDRDWLIE-HNEGLILLSGARKGDVGKFLMRGNMPQVEQCLAFYERYFPDRYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    LP+VATN+  F S +D++AH++ +A+ +   +   
Sbjct: 169  ELIRTGRADEESYLHAAVELAARRGLPVVATNDVRFTSPDDFDAHEIRVAIHNGFTLDDA 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  EM  +F+DLPEAL N+VEIARRC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEEEMCELFADLPEALANSVEIARRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L   A  GLE RLA     A  +      Y +RL  EL VI +M F GYFLI
Sbjct: 284  GEMSTEDYLVKCAREGLEERLAFLFPDADMRREKRPAYDERLAIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALNITDLDPLAFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDLVIDHVAETYGDDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +    +A + + +    AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLEKAFVA-EPQLQAIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  +  L 
Sbjct: 523  TDFAPLYCDGEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRARQGLE 582

Query: 600  L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                  IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDIEWQHASLQPVLEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F +GA   G+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSVFKAGAESIGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECLRMGLKVLPPDINSGQYH 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  +  I Y + AIKGVG      I+EA   D  F  L D C+R D KKLNRRVLE L
Sbjct: 823  FHVNPEGEIVYGIGAIKGVGEGPIEAIIEARNQDGHFRELFDLCARTDIKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +   + + +    +
Sbjct: 883  IMSGAFDRLGPHRAALMNSLCDALKAADQHAKAEAIGQGDMFGVLAEEPAAVEASYSTVA 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP+  Y   + +  G    ++   T RG  +    +V+S
Sbjct: 943  PWPEQVVLDGERETLGLYLTGHPITQYLREIERYAGGVRLKDIHPTDRGKMVTAVGLVLS 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   +   F
Sbjct: 1003 ARVMVTKRGNRIGVCTLDDRSGRLDVMLF 1031


>gi|325576846|ref|ZP_08147461.1| DNA-directed DNA polymerase III alpha subunit [Haemophilus
            parainfluenzae ATCC 33392]
 gi|325161052|gb|EGC73170.1| DNA-directed DNA polymerase III alpha subunit [Haemophilus
            parainfluenzae ATCC 33392]
          Length = 1159

 Score =  772 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1048 (39%), Positives = 604/1048 (57%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++G   +  ++   AAD   A+A+TD  N    + F  +  +
Sbjct: 1    MSAKPRFVHLRTHTDFSMIDGIAKVKPLVKACAADNMVALALTDFTNFCGVVRFYGETLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PIIG  + +          +       + ++ LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGIKPIIGADVHV----------KSDLCGEELFTLTLLAKNNEGYKNITLLLSKAYQRGY 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   EG+I+L+GG+ G I +     +S  AE  +  +++ F D  Y+
Sbjct: 111  V-DLPYIDREWLIE-HREGVIILSGGTQGDIAKKLLKENSSEAESAVSFYQEFFSDHFYL 168

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +L R    D  R     ++LA  H+LPLVATN+ +FL+ +D+EAH++ +A+     +   
Sbjct: 169  SLSRTGRPDEERYIQAALKLAEEHDLPLVATNDVVFLAPDDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP R T   Y ++  EM  +F+D+P ALENTV IA+RC+  L++       +   +   
Sbjct: 229  KRPKRYTEQQYFRSEEEMCDLFADIPSALENTVLIAQRCNVTLRLGQ-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L  KA  GLE RLA        +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 284  GELSTEDYLVMKAKEGLEERLAFLFPDEKVRAERRPEYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V + YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ K+I
Sbjct: 404  VDFCMDGRDRVIDHVADTYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLD-KAFEAEPQLQVAYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARLAREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  PVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINVGKHH 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +N  I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNENGEIVYGIGAIKGVGEGPIDALITARNEGGIFRDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  K +    K+      ++F     T  + +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALKASDQHAKDEAMGQADMFGVLTETHEEVENAYAHTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG     A ++VS 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYSSTRLKDLTPNRRGQISTAAGLLVST 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+RIG  T  + +   +   F
Sbjct: 1003 RFATTKKGNRIGIATIDDRSGRLDLTLF 1030


>gi|301155192|emb|CBW14656.1| DNA polymerase III alpha subunit [Haemophilus parainfluenzae T3T1]
          Length = 1159

 Score =  772 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1048 (39%), Positives = 605/1048 (57%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++G + +  ++   AA+   A+A+TD  N    + F  +  +
Sbjct: 1    MSTQPRFVHLRTHTDFSMIDGIVKVKPLVKACAANNMVALALTDFTNFCGVVRFYGETLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PIIG  + +          + +     + ++ LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGIKPIIGADVHV----------KSELCGEELFTLTLLAKNNEGYKNITLLLSKAYQRGY 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   EG+I+L+GG+ G I +     +S  AE  +  +++ F D  Y+
Sbjct: 111  V-DLPYIDQEWLIE-HREGVIVLSGGTQGDIAKKLLKENSFEAESAVSFYQEFFPDHFYL 168

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +L R    D  R     ++LA  H+LPLVATN+ +FL+ +D+EAH++ +A+     +   
Sbjct: 169  SLSRTGRPDEERYIQAALKLAEAHDLPLVATNDVVFLAPDDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP R T   Y ++  EM  +FSD+P ALENTV IA+RC+  L++       +   +   
Sbjct: 229  KRPKRYTEQQYFRSEEEMCDLFSDIPSALENTVLIAQRCNVTLRLGE-----YFLPKFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA        +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 284  GDLSTEDYLVMKSKEGLEERLAFLFPDEKVRAERRPEYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ K+I
Sbjct: 404  VDFCMDGRDRVIDHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLQTAYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R  +    
Sbjct: 523  TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARLTREGKP 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  LVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINVGKHH 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +N  I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNENGEIVYGIGAIKGVGEGPIDALITARNEGGIFRDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  K +    K+      ++F     T  + +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALKASDQHAKDEAMGQTDMFGVLTETHEEVENAYAHTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A ++VS 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYSSTRLKDLTPNRRGQISTVAGLLVST 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+RIG  T  + +   +   F
Sbjct: 1003 RFATTKKGNRIGIATIDDRSGRLDLTLF 1030


>gi|260425354|ref|ZP_05779334.1| DNA polymerase III subunit alpha [Citreicella sp. SE45]
 gi|260423294|gb|EEX16544.1| DNA polymerase III subunit alpha [Citreicella sp. SE45]
          Length = 1177

 Score =  772 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 510/1066 (47%), Positives = 685/1066 (64%), Gaps = 57/1066 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VH+ YSLLEGA+ L  +     A + PA+A+TDTNNLFSALEFS  A  
Sbjct: 4    MAD-PRFIHLRVHTEYSLLEGAVRLKKLPGLCEAMEMPAVAVTDTNNLFSALEFSVTASG 62

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPIIGCQ+D+           G+ P P  P +VLL     GY+ L++L SR+Y+   
Sbjct: 63   AGVQPIIGCQVDL----RYLNPAPGERPKPPAP-VVLLAQNERGYENLMKLNSRLYMRHD 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G +   + L  L E  ++GLI L+GG  GP+ R    N    A+  L    ++FGDRLYV
Sbjct: 118  G-EFPHVLLDEL-ETLSDGLICLSGGPDGPVGRLLRENHRAAAQVLLTRLHQIFGDRLYV 175

Query: 185  NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G D      R  E   V++AY   LPLVATN+  F     YEAHD ++ +A   
Sbjct: 176  ELQRHPGEDGLPEAERLSERGHVEMAYEMGLPLVATNDVYFPKPAMYEAHDAMICIAEGA 235

Query: 239  V-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                Q+ R R+TP HYLK   EMV++F+DLPEA+ENTVEIARRC+F+            +
Sbjct: 236  YVDQQQPRRRLTPQHYLKTPQEMVTLFADLPEAIENTVEIARRCAFMAY--------RRD 287

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    +E  ELR  A  GL+ RLA   I      + Y++RLDFEL +I  M F GYF
Sbjct: 288  PILPKFADDEVAELRRMANEGLQRRLA--VIPHAVTVEQYQERLDFELGIIEGMGFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 346  LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVIRYVQ KYGH++VAQIITFG+L +K A+RDVGR LQMPY QVDRL K
Sbjct: 406  FDIDFCMDRREEVIRYVQEKYGHDKVAQIITFGALLSKMAVRDVGRVLQMPYGQVDRLSK 465

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS++  + D+ R RE    +  VDRLL   Q++EGL R A THAAG+VI D
Sbjct: 466  MIPVEGVKPVSIEKALQDEPRLREEARNEEVVDRLLTYGQQIEGLLRSAGTHAAGVVIAD 525

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----- 591
            RP  +LVP+Y+D RS++P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + +     
Sbjct: 526  RPTDELVPLYQDPRSEMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVNLILKGGRPI 585

Query: 592  -------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                          G +  ++LIP DD  TY L     T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 586  HVAADGTQLYEPAEGGENQMNLIPLDDERTYRLYADAKTVAVFQVESSGMMDALKRMKPT 645

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI VY   KNG  +I S+HP ID +L ETQG+I+YQEQVMQI
Sbjct: 646  CIEDIVALVALYRPGPMENIPVYCEVKNGLREITSVHPSIDHILAETQGIIVYQEQVMQI 705

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKIKE MD ++ +F  GA++NG+ K  A  +F+LL KFA+
Sbjct: 706  AQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVDKKKATEVFDLLEKFAN 765

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  +  +A++   +  +
Sbjct: 766  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLATYFYEAKKGLKLDYV 825

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA---------DKPFDSLEDF 868
            PP VN     F V   ++ Y+L A+K VG    R ++E            DKPF ++ DF
Sbjct: 826  PPCVNRSQATFDVDKGKLVYALGALKNVGLEAMRLVVEGRRSVPEDPKSPDKPFVNVFDF 885

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              RVD K++ +R LE L  AG  D    +R ++ +SLD +  Y+  V + + +   ++F 
Sbjct: 886  ARRVDLKRVGKRPLEMLARAGCFDQLDRNRRRIFESLDALVAYSAAVHEQKHSAQVSLFG 945

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
             E G    +  L        + R   E + +GFY SGHPLD Y P L++  +   +++  
Sbjct: 946  -EAGDDLPEPRLSPVPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRRDVMLLDDAEN 1004

Query: 989  TIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              RG    ++LA +V  +Q++K+ KG+R  +   S+P+  YE   F
Sbjct: 1005 KARGGTCLVKLAGVVAGRQERKSAKGNRFAFAQLSDPSGAYEVTIF 1050


>gi|86159864|ref|YP_466649.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans
            2CP-C]
 gi|85776375|gb|ABC83212.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans
            2CP-C]
          Length = 1210

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1083 (36%), Positives = 607/1083 (56%), Gaps = 70/1083 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL +H+ YSLL+GA+ + ++L  + A    ++A+TD  NLF A++F +KA  AG++
Sbjct: 2    PDFVHLHLHTLYSLLDGAIRIKDLLKTVKAKGMSSVAVTDHGNLFGAVDFYKKAKEAGVK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G +  +          +          ++LL   AEG+  L  L S+ +  +     
Sbjct: 62   PILGMEAYVAGDKG-----RTDRSERIGRHLILLAKNAEGWANLRYLSSKAFT-EGFYYD 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
             RI    L++  ++GL+ LT   +G + R         A +    ++ +F     ++ +Q
Sbjct: 116  PRIDKQLLRD-HSKGLVGLTACLAGEVPRLARQGDMDGARRVAREYRDIFEPGSFFLEVQ 174

Query: 188  RHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   ++    +++ QL     +PLV T ++ ++S ++ +AH+VLM +A +       R 
Sbjct: 175  SNGMREQLDVNAKLAQLGRDEGIPLVGTADAHYVSRQEAKAHEVLMCIASNKTFQDPKRL 234

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  T   ++    EM +   D  EAL+NT+ IA  C+  L +    LP F   E      
Sbjct: 235  RHDTDGLFVAGPDEMAAALPDFREALDNTLRIAEMCNVELPLGKTFLPSFTLPEGM---- 290

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E++ +   A  GL+ R  +      +    YRQRL+ EL VI +M F GYFLIV DFI 
Sbjct: 291  SEDDYIVKLAREGLDRRFREIDGKYPHDRDLYRQRLEMELGVIKKMGFPGYFLIVQDFIN 350

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK+++IPVGPGRGSGAGS+ A++L ITD+DPLR++LLFERFLNP+R+SMPDFD+DFCQ+
Sbjct: 351  WAKEHHIPVGPGRGSGAGSIVAWSLRITDLDPLRWNLLFERFLNPERVSMPDFDVDFCQN 410

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI+YV+ KYG + V QIITFGSL+A++ +RDV R + +P+++ DR+ KL+P+    
Sbjct: 411  RRDEVIQYVRGKYGQDNVGQIITFGSLKARSVIRDVVRVMGLPFAEGDRIAKLVPDPVQG 470

Query: 486  PVSL--------QAIADDSRFREARLADPSVDRLLEI---------------SQKLEGLY 522
                          +  + R +E       + + ++                +  LEGL 
Sbjct: 471  KTPPLKELVFGSDKMPAEPRLKELYDKPTVISQWVDDKGVQNKVTTKDLLDIAMSLEGLN 530

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R A  HAAG+VI D+PL + VP Y+D +S++ V+QF  + +E AGL+KFDFLGLKTLT++
Sbjct: 531  RQAGLHAAGVVIADKPLWEYVPAYKDDKSEMLVSQFAKEEVEAAGLVKFDFLGLKTLTVI 590

Query: 583  QKSLDFLAQRGVKVDLS---LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
              +L  + +   ++       IP DD   Y L++   T G+FQ+ESSG  + +  M+P  
Sbjct: 591  DDALRMVKRNHPEMKDFAASDIPIDDPAVYELISRGDTGGVFQMESSGFTEMVVKMKPSR 650

Query: 640  IEDIIALVSLYRPGPID--------NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
             ED+IA  +LYRPGP+D         + VY +RK+G+EK+   HP ++ +L+ T GVI+Y
Sbjct: 651  FEDVIAAGALYRPGPLDQKLEDGRTMVDVYIDRKHGREKVQYPHPSLEKVLEPTYGVIVY 710

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVMQI+Q+L+GYSL +AD+LRRAMGKK  E M K++  F++GA  NG+   +A  IF+
Sbjct: 711  QEQVMQISQVLAGYSLGQADLLRRAMGKKKAEVMAKERVGFLAGAVANGVDDKVAGGIFD 770

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            L+ KFA YGFNKSH+AAY +++ QTAW+K HYPVEF+AA ++ E  N +K+     +AR 
Sbjct: 771  LMEKFAAYGFNKSHSAAYGLLTVQTAWLKAHYPVEFMAALISSEASNTDKVVLHISEARA 830

Query: 812  FNIQIMPPSVNTPCVDFKV----------GDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
              ++++PP VN     F               RI + L A++GVG +  + I+EA A  P
Sbjct: 831  SQLEVLPPDVNESDAAFGAFPPGAESPKGSRGRIRFGLGAVRGVGDSAVQAIVEARASGP 890

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F SL D   RVDSKK+N++VLE+LV +GALD  G  R QL   +D         + +R +
Sbjct: 891  FKSLFDLAGRVDSKKINKKVLEALVKSGALDFEGVPRWQLYFGIDAAIAAGASAQADRAS 950

Query: 922  KHENIFAH--EKGTFSDKITLE---------KFSVENSSVRFENEQRVLGFYFSGHPLDV 970
               ++F           K                     VR   E+  LGFY +GHPL  
Sbjct: 951  GQASLFGALTPSAATEAKPRYPRPGDAVGEVNVEEWPERVRLAFEKEALGFYLTGHPLMG 1010

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEA 1029
            Y+  +R+              G+ + +  +V S +++  + KG+R G++T  +     E 
Sbjct: 1011 YEREVRRYASSTCAAVAHKRHGDKVTVVGVVASLRERMNKEKGTRFGFLTLEDLTGTTEV 1070

Query: 1030 NFF 1032
              +
Sbjct: 1071 ICW 1073


>gi|224531850|ref|ZP_03672482.1| DNA polymerase III subunit alpha [Borrelia valaisiana VS116]
 gi|224511315|gb|EEF81721.1| DNA polymerase III subunit alpha [Borrelia valaisiana VS116]
          Length = 1161

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1036 (37%), Positives = 605/1036 (58%), Gaps = 23/1036 (2%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A 
Sbjct: 14   GMSFRAKFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AGI+PIIG +  +                     ++LL     GY+ L++L S  YL +
Sbjct: 74   KAGIKPIIGIEAYMAKTSKFLKKQDDLGKMS--YHLILLAKNELGYKNLLKLTSISYL-E 130

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y
Sbjct: 131  GFYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQRH   ++     ++V+ +    +PL A N+S ++++ED  A D+++ +      S 
Sbjct: 190  LELQRHGIKEQNIVNERLVEYSRELGVPLTAANDSHYVNKEDAVAQDIIVCIGTGAKKSD 249

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300
            ++R ++ T + Y+K++ EM  +F+DLPEALENTV I  +   F +    PILP +     
Sbjct: 250  ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPVE 309

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             +        L +  + GL+                 + R  +EL+VI  M F GYFLIV
Sbjct: 310  FN---TLGEYLEHLTLDGLK-------FRYKTLTNKIKDRAFYELSVIIGMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  ++IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDHDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L K IP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L++ +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DSP--KVSLKEVLDDNSLKEYFTSKPVYKELMDAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+ +L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFKMLGEGRSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G ++I   HP +  +L+ T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K +A  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEVASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +G      I++    +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  GIKNLGGIVVDLIIDEREKNGKYISFEDFVRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK--GTFSDKITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F   +   +       + F   + S     E+ 
Sbjct: 898  TLFENLDQLIEVVSEDKNNKKLGQNSLFDALENQDSIQQSFNYQVFKEYSYSELLGFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +           +A  + + ++ A ++   +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAINSFSSLNVLSDLAIKKDSIVQFAGILNLVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|154706370|ref|YP_001424773.1| DNA polymerase III alpha subunit [Coxiella burnetii Dugway 5J108-111]
 gi|154355656|gb|ABS77118.1| DNA polymerase III alpha subunit [Coxiella burnetii Dugway 5J108-111]
          Length = 1143

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1034 (40%), Positives = 618/1034 (59%), Gaps = 33/1034 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++HS YS+++  + ++ +L +    + PA+A+TD  NLF+ ++F ++A   GI+P
Sbjct: 4    SFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +   D++                  L     G++ LI+L+SR Y+  + +  V
Sbjct: 64   IIGSELLLAEGDDV-------------FRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHV 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL +   EGLI+L+G   G + +A     S +AE+RL  +   F  R Y+ LQR 
Sbjct: 111  LIQWEWLVQ-ANEGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRT 169

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R  +      V++LA  H +P+VATN   FLS+ D+EAH+  + +    ++   +RPR 
Sbjct: 170  RRDQEEEYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPRE 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   Y K+  EM ++FSD+PEALENTVEIA+RCS  L +    LP+F          + 
Sbjct: 230  YSDQQYFKSAEEMTALFSDIPEALENTVEIAKRCSVPLSLGEVFLPKFPVP----ANLKV 285

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+  R +A  GL  RL    +      +DY +RL+ E+ VI +M F+ YFLIVADFI WA
Sbjct: 286  EDYFRAQAKQGLTRRLVGLEMKNNLTHKDYEERLETEITVITKMGFASYFLIVADFIAWA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+++IPVGPGRGSGAGS+ AY+L IT++DPL   LLFERFLN +R+SMPDFDIDFC + R
Sbjct: 346  KQHHIPVGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEGR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI YV  +YG E VAQIIT+G++ A+A LRDVGR L +PY  VD++ KL+P +    +
Sbjct: 406  DRVIDYVAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELGVTL 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +    +    D  V  L++++ KLEGL R+A  HA G+VI    L+  VP+Y 
Sbjct: 466  E-KALEQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPLYS 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-----LSLIP 602
            +  SD  VTQF+   +E  GL+KFDFLGL+TLT++  ++  +  +    +     +  IP
Sbjct: 525  EPGSDHVVTQFDKDDVEAVGLVKFDFLGLRTLTIINWAVQNINAKCKIQNETELDIGTIP 584

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD +TY LL +  T  +FQLES GM++ +  +QPD   DI+ALV+L+RPGP+ + +V  
Sbjct: 585  LDDPKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMVET 644

Query: 663  NRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
                   +  +  +HP ++P+L+ T GVI+YQEQVMQIAQ+L+GYSL  ADVLR AMGKK
Sbjct: 645  FIACKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMGKK 704

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              EEM KQ+  F+ G    G+ + +A  IF+L+ KF+ YGFNKSH+AAYA+I+YQTAW+K
Sbjct: 705  KPEEMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAWLK 764

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSL 839
             HYP EF+AA ++ +MDN +K+  F  + R  N++++PP++N     F V    +I Y L
Sbjct: 765  AHYPAEFMAAVLSSDMDNTDKVVGFINECRDMNLELLPPNINWSHYPFTVNTKGQIVYGL 824

Query: 840  AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIKGVG   A +I+    A+  F  L +FCSRVD +K+NRR +E L+ +GA+D FG SR
Sbjct: 825  GAIKGVGEAAAMNIVACREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFGVSR 884

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              L +SL    + A+   ++      ++F  E     +     +    N S R   E+  
Sbjct: 885  ASLFESLTKAFQAAEQRNRDMILGQHDLFGEEVKGIDED--YTEVPEWNDSDRLRGEKET 942

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG Y SGHPL      ++ +G        +    N++ +A M++  +   TR G R+  +
Sbjct: 943  LGLYVSGHPLQACIKEMKAVGAVPINHL-SLSEKNSVVVAGMMMGMRTITTRSGKRMAIL 1001

Query: 1019 TFSEPAKEYEANFF 1032
            +  +   + +   F
Sbjct: 1002 SLEDQTGKIDVTLF 1015


>gi|88808431|ref|ZP_01123941.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 7805]
 gi|88787419|gb|EAR18576.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 7805]
          Length = 1173

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1051 (36%), Positives = 580/1051 (55%), Gaps = 35/1051 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++      PA+A+TD   ++ A+E  +    AGI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPQMVERAKELGMPALALTDHGVMYGAVELLKLCKGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          +          +V+L   A GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPQPK----KERRYHLVVLAKNAVGYRNLVKLTSISHLRGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L++  +EGLI+ T    G I +A       VA      ++++FG+  Y+ 
Sbjct: 118  FSRACIDKHLLKQY-SEGLIVATACLGGEIPQAIMRERPDVARDVARWYQEVFGEDFYLE 176

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V++A    + +VATN++ +L+  D EAHD L+ V    ++S + 
Sbjct: 177  IQDHGSPEDRIVNVEIVKIAQELGIQVVATNDAHYLTRHDVEAHDALLCVLTGKLISDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R R T   YLK+  EM  +F+D   P  ++  +      +  ++ +  +    + +    
Sbjct: 237  RLRYTGTEYLKSEEEMGRLFADHLDPAVVQEAIANTVSVAEKVEDYDILGRYQMPRFPIP 296

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                    L      GL  RL  G  +     + Y  RL  EL ++ +M F  YFL+V D
Sbjct: 297  EGHTPVTYLHEVTEQGLRDRL--GLSSNDTIEETYADRLAHELQIMEQMGFPTYFLVVWD 354

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I++A++  IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 355  YIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDIDTDF 414

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV  +YG E+VAQIITF  + +KA L+DV R L +PY   DRL KLIP  
Sbjct: 415  CIERRGEVIDYVTRRYGEEKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 474

Query: 483  PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
               P  L+A+    + +  F+E    DP V R ++++ ++EG  +    HAAG+VI   P
Sbjct: 475  RGKPAKLKAMIGDESPNPEFKEKYDKDPVVQRWVDMAMRIEGTNKTFGVHAAGVVIAADP 534

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597
            L +LVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +AQ    ++D
Sbjct: 535  LDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVAQSSGERID 593

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               +P  D  T+ LL      GIFQLES+GMRQ +  ++P  +EDI ++++LYRPGP+D 
Sbjct: 594  PDKLPPQDQGTFDLLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILALYRPGPLDA 653

Query: 658  --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  + NRK+G+E I   H  ++P+L ET G+++YQEQ+M+IAQ L+GYSL EAD+LRR
Sbjct: 654  GLIPKFINRKHGREAIDFAHSTLEPILSETYGIMVYQEQIMRIAQDLAGYSLGEADLLRR 713

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK   EM K +  F+ GAS+ G+   +A  +F+ +  FA+Y FNKSH+ AY  ++YQ
Sbjct: 714  AMGKKKVSEMQKHRGIFVKGASERGVDDKVADELFDQMVLFAEYCFNKSHSTAYGAVTYQ 773

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYPV ++AA +++     +K++++  +     I++MPP VN    DF   D RI
Sbjct: 774  TAYLKAHYPVAYMAALLSVNAGASDKVQRYISNCNAMGIEVMPPDVNASGTDFTPRDQRI 833

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L+A++ +G    R ++ +  AD PF+SL D C RV S  +NRR LESL+  GA+D  
Sbjct: 834  LFGLSAVRNLGDGAIRALIRSREADGPFESLADLCDRVPSSVINRRSLESLIHCGAMDAL 893

Query: 895  GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE----------K 942
                +R QL+  LD +  +A    ++R +   N+F    G+                   
Sbjct: 894  EPEANRAQLIADLDLLLDWANSRARDRASGQGNLFDLMAGSADGDSDAPSDLSLAPKAAP 953

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                + S + + E+ ++GFY S HPL    P  R +   G            +   AMV 
Sbjct: 954  VKDYHPSEKLKLEKDLVGFYLSDHPLKQLTPPARLLAPIGLAGLEEQADKAKVSAIAMVS 1013

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +Q  TRKG R+  +   +     EA  FP
Sbjct: 1014 EMRQVTTRKGDRMAVLQLEDLTGSCEAVVFP 1044


>gi|303228475|ref|ZP_07315306.1| putative DNA polymerase III subunit alpha [Veillonella atypica
            ACS-134-V-Col7a]
 gi|302516833|gb|EFL58744.1| putative DNA polymerase III subunit alpha [Veillonella atypica
            ACS-134-V-Col7a]
          Length = 1135

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1033 (36%), Positives = 599/1033 (57%), Gaps = 31/1033 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ +SLL+G   L +++ +    +QPA+AITD  N+++A+ F ++  A GI+PI
Sbjct: 4    FVHLHSHTEFSLLDGISRLPDMVRRAKELEQPALAITDHGNMYAAIYFYKECVAQGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +     L            +  ++LL  T EGY+ L+++VS+    +      R
Sbjct: 64   IGCEVYVTEGSRLDKPE--GRSRERLKHLILLAETMEGYRNLVKIVSKAST-EGFNYKPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 L++  ++G+I L+    G + +    ++   A + +  + + FG D  ++ +Q H
Sbjct: 121  ADHDLLRQY-SKGIIALSACIQGEVPQYILQDNMDGARRAVEWYIETFGKDNFFLEIQNH 179

Query: 190  RGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +  R  QV+ QLA  + L +VA+N+  ++ ++D +A D+ + +      ++ DR + 
Sbjct: 180  GLPEELRAQQVLCQLADEYGLGIVASNDFHYVMKDDADAQDIRVCIQTGRRRAEVDRLKF 239

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + YLK+  EM  +F  +P ALENTV+IA RC+         LP F   E +      
Sbjct: 240  PNDEFYLKSGDEMAELFGHIPGALENTVKIADRCNVEFNFDEHHLPHFDVPEGE----TS 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR            +     G  +++ ++RLD+EL+VI  M F  YFLIV D++++A
Sbjct: 296  KTYLRKVCER-------EIPRLYGDTSEELKKRLDYELDVIGTMGFEDYFLIVWDYVRYA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++R
Sbjct: 349  REHDILVGPGRGSAAGSVVAYLLGITGLDPLQYDLLFERFLNPERVSMPDIDIDFCYEKR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             E I YV  KYG  RV+QIITFG+  A+A +RDVGR L +P ++V+R+ K+IPN+    +
Sbjct: 409  GEAIDYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELGITL 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                       +     DP+V  L +  QKLEG+ R++STHAAG+VI   PL   VP+  
Sbjct: 469  EKAL--KGKDLKALYDTDPNVKELFDFGQKLEGIARNSSTHAAGVVISADPLDDHVPVQN 526

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
                   VTQ++   IE+ GL+K DFLGL+TLT++  +L  +   RG+ +DL  IP DD 
Sbjct: 527  SNEEGF-VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDDK 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664
                LLT   T G+FQLES G+ + +  ++P+  ED+I LV+LYRPGP+ + +   + +R
Sbjct: 586  AACELLTKGDTSGVFQLESDGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFIDR 645

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++GK+++  +HP+++P+LK+T GVI+YQEQVMQIA  + G+SL +AD++RRAMGKK +  
Sbjct: 646  RHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKESV 705

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +  Q+E FI G+  NGI ++IA  +F+LL  FA YGFNKSH+AAYA I+YQTA++K HY 
Sbjct: 706  LKAQRESFIQGSINNGIEESIANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKVHYF 765

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EF+AA+MT  M N++K+  +    ++ N+Q++ P VN     F V  + I + L  IK 
Sbjct: 766  PEFMAATMTSFMQNMDKLTYYINACKKHNVQVLGPDVNHSLRSFAVQGDAIRFGLGGIKN 825

Query: 845  VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG      ++    A+  + S+ DFC RVDSK +N+R+LESL+  GA+D F  +R QLL 
Sbjct: 826  VGDNAIDRLIAEREANGLYTSITDFCRRVDSKVVNKRLLESLIRCGAMDGFEENRNQLLH 885

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
              ++ Q      +K+      ++F        D I +      +   + ++E+   GFY 
Sbjct: 886  MYESAQAVGAKQQKDAAMGTMSLFGESTDDV-DMIPVPNLPDLSEDDKLKDEKDYTGFYI 944

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATI---RGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            +GHPL  Y   L+  G+    + +       G  I    ++  +  + T++G  +  +  
Sbjct: 945  TGHPLQGYNKELK--GLFELGQLLENPERFDGQTITFGGLIAERGDRPTKRGDVMSILRI 1002

Query: 1021 SEPAKEYEANFFP 1033
             + +   +   FP
Sbjct: 1003 EDYSGSAQVVAFP 1015


>gi|303231851|ref|ZP_07318562.1| putative DNA polymerase III subunit alpha [Veillonella atypica
            ACS-049-V-Sch6]
 gi|302513458|gb|EFL55489.1| putative DNA polymerase III subunit alpha [Veillonella atypica
            ACS-049-V-Sch6]
          Length = 1135

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1033 (36%), Positives = 600/1033 (58%), Gaps = 31/1033 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ +SLL+G   L +++ +    +QPA+AITD  N+++A+ F ++  A GI+PI
Sbjct: 4    FVHLHSHTEFSLLDGISRLPDMVRRAKELEQPALAITDHGNMYAAIYFYKECVAQGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +     L            +  ++LL  T EGY+ L+++VS+    +      R
Sbjct: 64   IGCEVYVTEGSRLDKPE--GRSRERLKHLILLAETMEGYRNLVKIVSKAST-EGFNYKPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 L++  ++G+I L+    G + +    ++   A + +  + + FG D  ++ +Q H
Sbjct: 121  ADHDLLRQY-SKGIIALSACIQGEVPQYILQDNMDGARRAVEWYIETFGKDNFFLEIQNH 179

Query: 190  RGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +  R  QV+ QLA  + L +VA+N+  ++ ++D +A D+ + +      ++ DR + 
Sbjct: 180  GLPEELRAQQVLCQLADEYGLGIVASNDFHYVMKDDADAQDIRVCIQTGRRRAEVDRLKF 239

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + YLK+  EM  +F  +P ALENTV+IA RC+         LP F   E +      
Sbjct: 240  PNDEFYLKSGDEMAELFGHIPGALENTVKIADRCNVEFNFDEHHLPHFDVPEGE----TS 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR            +     G  +++ ++RLD+EL+VI  M F  YFLIV D++++A
Sbjct: 296  KTYLRKVCER-------EIPRLYGDTSEELKKRLDYELDVIGTMGFEDYFLIVWDYVRYA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++R
Sbjct: 349  REHDILVGPGRGSAAGSVVAYLLGITGLDPLQYDLLFERFLNPERVSMPDIDIDFCYEKR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             E I YV  KYG  RV+QIITFG+  A+A +RDVGR L +P ++V+R+ K+IPN+    +
Sbjct: 409  GEAIDYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELGITL 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                       +     DP+V  L +  QKLEG+ R++STHAAG+VI   PL   VP+  
Sbjct: 469  EKAL--KGKDLKALYDTDPNVKELFDFGQKLEGIARNSSTHAAGVVISADPLDDHVPVQN 526

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
                   VTQ++   IE+ GL+K DFLGL+TLT++  +L  +   RG+ +DL  IP DD 
Sbjct: 527  SNEEGF-VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDDK 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664
                LLT   T G+FQLES G+ + +  ++P+  ED+I LV+LYRPGP+ + +   + +R
Sbjct: 586  AACELLTKGDTSGVFQLESDGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFIDR 645

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++GK+++  +HP+++P+LK+T GVI+YQEQVMQIA  + G+SL +AD++RRAMGKK +  
Sbjct: 646  RHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKESV 705

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +  Q+E FI G+  NGI ++IA  +F+LL  FA YGFNKSH+AAYA I+YQTA++K HY 
Sbjct: 706  LKAQRESFIQGSINNGIEESIANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKAHYF 765

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EF+AA+MT  M N++K+  +    ++ N+Q++ P VN     F V D+ I + L  IK 
Sbjct: 766  PEFMAATMTSFMQNMDKLTYYINACKKHNVQVLGPDVNHSLRSFAVQDDAIRFGLGGIKN 825

Query: 845  VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG      ++    A+  + S+ DFC RVDSK +N+R+LESL+  GA+D F  +R QLL 
Sbjct: 826  VGDNAIDRLIAEREANGLYTSITDFCRRVDSKVVNKRLLESLIRCGAMDGFEENRNQLLH 885

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
              ++ Q      +K+      ++F        D I +      +   + ++E+   GFY 
Sbjct: 886  MYESAQAVGAKQQKDAAMGTMSLFGESTDDV-DMIPVPNLPDLSEDDKLKDEKDYTGFYI 944

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATI---RGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            +GHPL  Y   L+  G+    + +       G  I    ++  +  + T++G  +  +  
Sbjct: 945  TGHPLQGYNKELK--GLFELGQLLENPERFDGQTITFGGLIAERGDRPTKRGDVMSILRI 1002

Query: 1021 SEPAKEYEANFFP 1033
             + +   +   FP
Sbjct: 1003 EDYSGSAQVVAFP 1015


>gi|203284485|ref|YP_002222225.1| DNA polymerase III, subunit alpha [Borrelia duttonii Ly]
 gi|201083928|gb|ACH93519.1| DNA polymerase III, subunit alpha [Borrelia duttonii Ly]
          Length = 1144

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/1034 (38%), Positives = 600/1034 (58%), Gaps = 22/1034 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL VHS +SLL+GA  + +I+ K        IA+TD  NLF A++F ++A  
Sbjct: 1    MNLKAKFVHLHVHSDFSLLDGAAKIVDIVSKAKEYNMSHIALTDHGNLFGAIKFYREAKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G +  +   + LK   +          ++LL    +GY+ L++L S  YL + 
Sbjct: 61   AGIKPIVGIEAYMS--NTLKHIKKNDEFGKPYYHLILLAKNEQGYKNLLKLTSVSYL-EG 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 R+    L +  +EGLI ++    G I +    N    A+  +L FK  FGD  Y+
Sbjct: 118  FYYRPRMDRDDLAKY-SEGLICMSACIGGIIPQLILSNRFDDAKNEILWFKNTFGDDFYL 176

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH    +     +++  +   ++ L  +N+S ++++ED  A D+++ +      S  
Sbjct: 177  ELQRHGIKQQDIVNEKLIAYSKELDVQLSVSNDSHYVNKEDATAQDIIVCIGTGAKRSDS 236

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS-FILQVHAPILPRFIEKECD 301
             R ++ T + YLK+  EM  +F DLPEAL NT++IA +C+ F ++   PI P +   E  
Sbjct: 237  GRFKMETDEFYLKSPEEMCELFKDLPEALANTLKIAEKCNDFEIKFPGPIFPEYHIPEEF 296

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D Q      L +  + GL+ R A           + ++R  +EL+ I  M F  YFLIV 
Sbjct: 297  DTQG---QYLEHLTLEGLKFRYAN-------ITDNIKERAFYELSTIINMGFEAYFLIVW 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++A  N+IPVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDID
Sbjct: 347  DFIKFAHDNDIPVGPGRGSGAGSIVAYALRITDVDPLKYNLLFERFLNPERVSMPDFDID 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC + RDEVI+YV  KYG ++VAQIITFG+L+ KA  +DVGR L +P+ Q + + KLIP+
Sbjct: 407  FCFEGRDEVIKYVTKKYGEDKVAQIITFGTLKPKAVFKDVGRVLDIPFVQSNEITKLIPD 466

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P   VSL+ +  D   +E     P  + L+E +  LEG+ RHASTHAAGIVI    L+ 
Sbjct: 467  GP--KVSLREVLKDKALKEYLNKGPVYNELMEAALVLEGMNRHASTHAAGIVIARTSLTD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
             VP+Y+D + D   TQ+ M  +E  GL+K DFLGLKTLTL++ +   +        ++ I
Sbjct: 525  YVPLYKDYKQDTVSTQYTMDLLEDCGLVKMDFLGLKTLTLIKNAEKLIKITDPDFSIATI 584

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
               D +T+ +L+   +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  +
Sbjct: 585  SDSDAKTFKMLSEGRSTSVFQFESEGMQQILKDSKPDNIEDLIALNALYRPGPMQFIPQF 644

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K G ++I   HP +  +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK 
Sbjct: 645  VAAKTGAKRIKYPHPDLTEVLKPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKK 704

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            ++EM++ K  FI GA + G  +T+A +IFELL  FA YGFNKSHAAAY++I+YQTA++K 
Sbjct: 705  EDEMNRMKVDFIKGALEKGYDETLASDIFELLKPFAGYGFNKSHAAAYSLIAYQTAYLKA 764

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +YP  F+AA++T E++N EK+  + ++ +   I ++ P +N    DF+V  + I Y L  
Sbjct: 765  NYPASFMAANLTNEINNTEKLSYYIEETKSMGINVLRPDINQSFKDFRVVGSDISYGLNG 824

Query: 842  IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK +G      I+     +  + S EDF  RVD K +N++ LE+ + +G  D  G +R  
Sbjct: 825  IKNIGELMVDLILNERQENGEYKSFEDFIKRVDEKVINKKFLEASIKSGLFDSLGQNRRT 884

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L+++LD +  +    +  +     ++FA  +    +      F   +       E+ +LG
Sbjct: 885  LIENLDKLIAFVLENKNAKKQGQNSLFA-SQNILEETFNYNLFEEYSYLELLGFEKELLG 943

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGWVT 1019
            FY SGHPLD YK  L         + +A+ R   ++ A  +   +    +K + R+ +  
Sbjct: 944  FYVSGHPLDPYKSELEFFTNFNVVKDLASRRNTVVKFAGSLNFIRVVHLKKNNARMAFGI 1003

Query: 1020 FSEPAKEYEANFFP 1033
                    E   FP
Sbjct: 1004 VENFEGSIEIVVFP 1017


>gi|330936801|gb|EGH40958.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. pisi str.
            1704B]
          Length = 1173

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1065 (38%), Positives = 601/1065 (56%), Gaps = 57/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  
Sbjct: 1    MP--ASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PI G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q
Sbjct: 59   SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   W+ +  +EG+I L+    G I  A    +   A++ L  + ++F DR Y+
Sbjct: 109  RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYI 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +   
Sbjct: 168  EVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDP 227

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R    +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   
Sbjct: 228  RRSHNYSDQQYLKSPEEMTELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287

Query: 303  IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            I    +   R  +  GLE R                 Q Y  RL+FEL++I +M F GYF
Sbjct: 288  I----DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 344  LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDVGR     Y   DRL K
Sbjct: 404  FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVGRVQGKSYGLADRLSK 463

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP +    +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI   
Sbjct: 464  MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPT 522

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592
             L+   P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +      
Sbjct: 523  KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +D++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RP
Sbjct: 583  EEPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642

Query: 653  GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V +               +   +  + P+L  T G+I+YQEQVMQIAQ+++GY
Sbjct: 643  GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH
Sbjct: 703  TLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSH 762

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAY ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT  
Sbjct: 763  SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822

Query: 826  VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F V  D RI Y L AIKGVG      I +A  D PF  L DFC+RVD K++N+R L+ 
Sbjct: 823  FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQDGPFKDLFDFCARVDLKRVNKRTLDG 882

Query: 885  LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+ +GALD  G                +R  LL +L+   + A+   ++R + H ++F  
Sbjct: 883  LIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGG 942

Query: 930  E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +          K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +  
Sbjct: 943  LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|329893785|ref|ZP_08269873.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC3088]
 gi|328923508|gb|EGG30822.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC3088]
          Length = 1160

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1047 (38%), Positives = 587/1047 (56%), Gaps = 41/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL++H+ YSL++G + +  ++ K+A    PA+A+TD  N F  ++  + A  AG++P
Sbjct: 3    DFVHLRLHTEYSLIDGIVRIKPLMSKVAELGMPAVAVTDFCNFFGLVKAYKAALGAGVKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G    I           G         + LLV++ EGY  L  L+S+ Y   Q     
Sbjct: 63   IFGADFLIS----------GLAETDRALPLTLLVTSLEGYANLTRLISKAYQEGQRLGVP 112

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL E    GLI L+GG  G + +    N   +A +    +  LF  R Y+ +QR 
Sbjct: 113  YIEYEWLTEF-QGGLIALSGGREGQLGQLLLANKQDLALEHASQWMALFPGRFYIEIQRT 171

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
                +     + V+LA   + P+VATN+  FL  +++EAH+  + +     +    RPR 
Sbjct: 172  GRDNEEPYIHEAVKLASALQCPIVATNDVRFLQADEFEAHEARVCIGEGRTLDDPRRPRN 231

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T   YL++  EM  +F DLPEAL NTVEIA+RC+ IL +  P LP +   E        
Sbjct: 232  YTDQQYLRSPQEMAELFQDLPEALANTVEIAKRCNLILNLGTPYLPEYPVPEGM----TM 287

Query: 308  ENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +   R  +  GL  R     +      +  QDY  RL+ EL++I +M F GYFLIV DFI
Sbjct: 288  DQYFRQLSHEGLAQRIGGQGERIPDPRFSHQDYIDRLNIELDIIIQMGFPGYFLIVMDFI 347

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK+++IPVGPGRGSGAGS+ AY L ITD+DPL++ LLFERFLNP+R+SMPDFD+DFC 
Sbjct: 348  RWAKEHDIPVGPGRGSGAGSLVAYVLLITDLDPLQYDLLFERFLNPERVSMPDFDVDFCM 407

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRRDEVI YV   YG + V+QIITFG++ AKA +RDV R     Y   D+L KLIP +  
Sbjct: 408  DRRDEVIDYVATHYGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKLIPFEVG 467

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A+  +   R+    D     + +++ +LEG+ R+   HA G+VI    L    P
Sbjct: 468  MTL-AKAVEQEEALRDFLRDDSQAQEIWDMACQLEGITRNVGKHAGGVVIAPSKLVDFSP 526

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLS 599
            +Y D      VTQ++   +E AGL+KFDFLGL+TLT++  ++  +  R V       D++
Sbjct: 527  LYCDETGGGLVTQYDKNDVEDAGLVKFDFLGLRTLTIIAWAIKMINPRRVAHGEQALDIN 586

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD+  + LL    T  +FQLES GM+  ++ ++PD  EDIIALV+L+RPGP+ + +
Sbjct: 587  QIPLDDNAVFQLLQQADTTAVFQLESRGMKDLIKRLRPDNFEDIIALVALFRPGPLQSGM 646

Query: 660  V-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            V       +             H  + P+L  T G+I+YQEQVMQIAQ+L+GY+L  AD+
Sbjct: 647  VDNFINRKHGREAIAYPDAHYQHESLKPILDPTYGIILYQEQVMQIAQVLAGYTLGGADM 706

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  EEM KQ+E F SGA++ GI   +A+ IF+L+ KFA YGFNKSH+AAYA++
Sbjct: 707  LRRAMGKKKPEEMAKQREVFQSGAAERGIDPELAIRIFDLVEKFAGYGFNKSHSAAYALV 766

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SYQTAW+K HYP EF+AA M+ E+ N +KI  F ++ R   + +  P VN     F V D
Sbjct: 767  SYQTAWLKVHYPAEFMAAVMSSELQNTDKIVIFIEECRAMGLPLKLPDVNEGRYAFTVND 826

Query: 833  -NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               I Y L AIKG+G      I+    A+ PF  L DFC+R D + LN+R +E+LV AGA
Sbjct: 827  LGEIVYGLGAIKGLGEGPVEAILRERDANGPFRDLFDFCARTDRRLLNKRAIEALVRAGA 886

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-----EKGTFSDKITLEKFSV 945
             D     R  L+ ++D+  K A+    N  +  +++F            +          
Sbjct: 887  FDSLSEPRWVLMAAVDDAVKAAEQKASNTASGIDDLFGEVMPSAPSADGNVYAAFRSARP 946

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             +   R   E+  LG Y +GHP+D Y+  +R+       +  A  + +  R+  ++V+ +
Sbjct: 947  WSGRERLSGEKDTLGLYVTGHPIDDYEREIRQFVPTKIADLRADGKSSQ-RIVGLIVAVR 1005

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              KT++G  +  VT  + +   EA  +
Sbjct: 1006 TMKTKRGDTMAIVTLDDRSARIEATVY 1032


>gi|146292466|ref|YP_001182890.1| DNA polymerase III subunit alpha [Shewanella putrefaciens CN-32]
 gi|145564156|gb|ABP75091.1| DNA polymerase III, alpha subunit [Shewanella putrefaciens CN-32]
          Length = 1157

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1047 (40%), Positives = 601/1047 (57%), Gaps = 37/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NN    ++F      
Sbjct: 1    MSD-PRFVHLRVHSDFSMSDGVAKVKPILAQVEALGMAAVALTDQNNFCGLVKFYSGCHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q         ++ ++     GYQ L +++S+ YL  Q
Sbjct: 60   AGIKPIIGADFWM----------QVPGFEGEFCALTIIAMNNVGYQNLTQIISQAYLRGQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                V I   WL     EG+++L+G   G I +A    ++   E     ++  F +R ++
Sbjct: 110  VAGRVVIDQEWLLTY-NEGILLLSGAKEGDIGKALLKGNNTQVESLCEFYQTHFAERYFL 168

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R     V LA     P+VATN  +FL  ED++AH++ +A+     ++  
Sbjct: 169  ELIRTGRPDEERYLHMAVVLAQEKGFPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   YL++  EM  +F+D+P AL NTVEIA+RC+  ++++              
Sbjct: 229  RRPKKYSEQQYLRSEEEMCELFADIPAALSNTVEIAKRCNVTIRLYEYF-----LPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L + +  GLE RLA         A+   +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMSIEDFLVDCSKKGLEERLAFLFPDPQVRAERRGEYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   +   +E+  AD  V  L+++ +KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPEPGMTL-AKAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +          
Sbjct: 523  TDFAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PVRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP +F+AA M+ +MDN +KI     +  +  + ++PP VN     
Sbjct: 763  AYALVSYQTLWLKTHYPSQFMAAVMSADMDNTDKIVTLVDECERMGLTLIPPDVNKGLFK 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+
Sbjct: 823  FTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLI 882

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945
             AGALD  G  R  ++ +L    + A    K +     ++F        D K    + + 
Sbjct: 883  CAGALDSLGPHRASMMATLPEAMRAADQHAKAQAIGQHDMFGLLNSEPEDSKQQFVECTP 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ +
Sbjct: 943  WPDKIWLEGERETLGLYLTGHPINQYLKELKYYTSGRLKDVHPTERGKTVKAAGLVVATR 1002

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++GS++G +T  + +   E   F
Sbjct: 1003 VMLTKRGSKMGLLTLDDKSARLEVMLF 1029


>gi|161830648|ref|YP_001597182.1| DNA polymerase III, alpha subunit [Coxiella burnetii RSA 331]
 gi|161762515|gb|ABX78157.1| DNA polymerase III, alpha subunit [Coxiella burnetii RSA 331]
          Length = 1143

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1034 (40%), Positives = 620/1034 (59%), Gaps = 33/1034 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++HS YS+++  + ++ +L +    + PA+A+TD  NLF+ ++F ++A   GI+P
Sbjct: 4    SFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +   D++                  L     G++ LI+L+SR Y+  + +  V
Sbjct: 64   IIGSELLLAEGDDV-------------FRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHV 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL +   EGLI+L+G   G + +A     S +AE+RL  +   F  R Y+ LQR 
Sbjct: 111  LIQWEWLVQ-ANEGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRT 169

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R  +      V++LA  H +P+VATN   FLS+ D+EAH+  + +    ++   +RPR 
Sbjct: 170  RRDQEEEYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPRE 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   Y K+  EM ++FSD+PEALENTVEIA+RCS  L +    LP+F          + 
Sbjct: 230  YSDQQYFKSAEEMKALFSDIPEALENTVEIAKRCSVPLSLGEVFLPKFPVP----ANLKV 285

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+  R +A  GL  RL    +      +DY +RL+ E+ VI +M F+ YFLIVADFI WA
Sbjct: 286  EDYFRAQAKQGLTRRLVGLEMKNNLTHKDYEERLETEITVITKMGFASYFLIVADFIAWA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+++IPVGPGRGSGAGS+ AY+L IT++DPL   LLFERFLN +R+SMPDFDIDFC + R
Sbjct: 346  KQHHIPVGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEGR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI YV  +YG E VAQIIT+G++ A+A LRDVGR L +PY  VD++ KL+P +    +
Sbjct: 406  DRVIDYVAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELGVTL 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +    +    D  V  L++++ KLEGL R+A  HA G+VI    L+  VP+Y 
Sbjct: 466  E-KALEQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPLYS 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVKVDLSLIP 602
            +  SD  VTQF+   +E  GL+KFDFLGL+TLT++  ++  +      Q   ++D+  IP
Sbjct: 525  EPGSDHVVTQFDKDDVEAVGLVKFDFLGLRTLTIINWAVQNINAKRKIQNETELDIGTIP 584

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD +TY LL +  T  +FQLES GM++ +  +QPD   DI+ALV+L+RPGP+ + +V  
Sbjct: 585  LDDPKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMVET 644

Query: 663  NRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
                   +  +  +HP ++P+L+ T GVI+YQEQVMQIAQ+L+GYSL  ADVLR AMGKK
Sbjct: 645  FIACKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMGKK 704

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              EEM KQ+  F+ G    G+ + +A  IF+L+ KF+ YGFNKSH+AAYA+I+YQTAW+K
Sbjct: 705  KPEEMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAWLK 764

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSL 839
             HYP EF+AA ++ +MDN +K+  F  + R  N++++PP++N     F V    +I Y L
Sbjct: 765  AHYPAEFMAAVLSSDMDNTDKVVGFINECRDMNLELLPPNINWSHYPFTVNTKGQIVYGL 824

Query: 840  AAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIKGVG   A +I+    A+  F  L +FCSRVD +K+NRR +E L+ +GA+D FG SR
Sbjct: 825  GAIKGVGEAAAMNIVAYREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFGVSR 884

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              L +SL    + A+   ++      ++F  E     +     +    N S R   E+  
Sbjct: 885  ASLFESLTKALQAAEQRNRDMILGQHDLFGEEVKGIDED--YTEVPEWNDSDRLRGEKET 942

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG Y SGHPL      ++ +G        +    N++ +A M++  +   TR G R+  +
Sbjct: 943  LGLYVSGHPLQACIKEMKAVGAVPINHL-SLSEKNSVVVAGMMMGMRTITTRSGKRMAIL 1001

Query: 1019 TFSEPAKEYEANFF 1032
            +  +   + +   F
Sbjct: 1002 SLEDQTGKIDVTLF 1015


>gi|303235030|ref|ZP_07321654.1| DNA polymerase III, alpha subunit [Finegoldia magna BVS033A4]
 gi|302493885|gb|EFL53667.1| DNA polymerase III, alpha subunit [Finegoldia magna BVS033A4]
          Length = 1161

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1050 (35%), Positives = 584/1050 (55%), Gaps = 44/1050 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G   +  +LDK+   +  AIAITD  ++F  ++F ++     I+P
Sbjct: 4    TFTHLHVHTEYSLLDGFSPIEKLLDKVEELKMKAIAITDHGSMFGTVKFYKECKKRNIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++    +D+     + K        +VLL    +GY  L+++VS  Y ++      
Sbjct: 64   IIGCEIYTTNKDHKIKNPENKF----YNHLVLLAKNQKGYSNLMKIVSLGY-VEGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+  + L++  +EG+I L+    G +  +        A+      K ++G+  Y+ LQ H
Sbjct: 119  RVDKNTLRKY-SEGIIALSACLKGEVQESLIRYGYDKAKDVAKELKDIYGEDFYLELQNH 177

Query: 190  RGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +       + Q+A   ++ LV TN+  ++ +EDY+ H++L+ +     + + ++   
Sbjct: 178  SSREDMVVMENIPQIAKELDIGLVCTNDVHYIEKEDYKIHNILICLQTGKTIEEDNKMSY 237

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + +L++  +M  +F + PEA+ENT +IA  C+  L+     LP F   E        
Sbjct: 238  IPGEFFLRSEEQMKDLFKEYPEAIENTKKIAEMCNVELEFGHLHLPYFAIPEGF----TN 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + L+     GLE R A          Q+ ++R ++EL+VI +M +  YFLIV DFI++A
Sbjct: 294  SSYLKKLVFDGLEKRFAND-----ERLQEAKERCEYELSVIEKMGYVDYFLIVWDFIRFA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K  +IPVGPGRGS AGS+ +Y L ITDI+PL + L+FERFLNP+R+SMPD DIDFC +RR
Sbjct: 349  KSQDIPVGPGRGSAAGSIISYCLEITDINPLDYDLIFERFLNPERVSMPDIDIDFCYERR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI YV NKYG ++VAQI+TFG++ A+ A+RDVGR L M +  VD   K +PN     +
Sbjct: 409  EEVIDYVVNKYGEDKVAQIVTFGTMAARNAIRDVGRVLAMDFKTVDDTAKKVPNLLNINI 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +++     FR+A   +  V +L+++++++EG+ RH STHAAG+VI   P+ + VP+  
Sbjct: 469  D-KSLEISPEFRKAYEENRDVKKLVDVARRVEGMPRHTSTHAAGVVISKLPIMEYVPL-- 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
             +  D  +TQFNM  +E+ GL+K DFLGL+TLT++   + ++ + + + V+   +  +D 
Sbjct: 526  AINKDAVITQFNMTELEELGLLKMDFLGLRTLTVISDCIKYIKKNKNIDVNFEDMNENDP 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +   + T   TLGIFQ ES GMR  L+ ++P   +D+IA  +L+RPGP++ I  Y + K+
Sbjct: 586  KVLSMFTVAQTLGIFQFESQGMRNFLKELKPTKFDDLIAANALFRPGPMNEIPTYIHNKH 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +E +  + PL++ +LK T G I+YQEQVMQI Q ++G+SL EAD LRRAM KK  + M+
Sbjct: 646  NEEDVEYLSPLLEDILKPTYGTIVYQEQVMQIVQKIAGFSLGEADNLRRAMSKKKMKVME 705

Query: 727  K------------QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
                              I GA + G+ + +A  I++L+  FA Y FNKSH+AAY++++ 
Sbjct: 706  DGRKEFIFGKEDENGNILIEGAIRRGVEEDVANKIYDLMIDFAKYAFNKSHSAAYSLVAM 765

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            +TAW+K +YPVEFLAA ++  M N  +I  + ++AR+ +I+I  P +N     F V DN 
Sbjct: 766  RTAWLKYYYPVEFLAALISSVMGNTSQISLYIEEARRLDIKIEEPDINYSLDKFDVKDNS 825

Query: 835  IYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGA 890
            I Y L AIK VGT      I+  + +  F S  DF  R+   D   +N+R +ESL+ AGA
Sbjct: 826  IIYGLKAIKNVGTNLIDQTIISRNENGKFKSFRDFVERIYAKDKSAINKRSIESLIKAGA 885

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSS 949
                G +R  L+    +I    Q   KN      N+F   E    +D+    +    + S
Sbjct: 886  FSSLGETRATLMLQYQSIIDSVQSGLKNNVPGQSNLFDMFESNDENDRDDFTRREEFDKS 945

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI------RGNNIRLAAMVVS 1003
                 E+ VLG Y S HPL  Y  I+ +       +            G  +++  ++ S
Sbjct: 946  ELLRMEKEVLGIYLSDHPLRAYSSIIDQYSNFSTGDLEDDAYNEKNFDGKRVKVVGIIES 1005

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +K T+    + +V F +     E   FP
Sbjct: 1006 INKKFTKNQKIMEFVKFEDLYGTMELIVFP 1035


>gi|292492697|ref|YP_003528136.1| DNA polymerase III subunit alpha [Nitrosococcus halophilus Nc4]
 gi|291581292|gb|ADE15749.1| DNA polymerase III, alpha subunit [Nitrosococcus halophilus Nc4]
          Length = 1158

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 432/1037 (41%), Positives = 613/1037 (59%), Gaps = 30/1037 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ YS+++G + +  ++        PA+A+TD NN+F+ ++F + A A G++P
Sbjct: 4    SFVHLHLHTEYSMVDGLVRIRPLVRAAREAGMPAVAVTDQNNIFAMVKFYRAAQAEGVKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  + +             T       + LL     GY  L  L+SR Y   Q     
Sbjct: 64   IIGADVFLVDS----------TESSRASRVTLLCQNEGGYCNLSRLLSRAYSEGQYHGVP 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+  +WL +  ++GLI+L+GG  G + +A    ++  A+K L  ++ LF  R Y+ L R 
Sbjct: 114  RLQWNWL-QSQSDGLIVLSGGREGDVGQALLAGNNIQAKKLLERWQALFPGRYYLELHRT 172

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +       V LA   + P+VATN+  FL  +D+EAH+  + +     +    RPR 
Sbjct: 173  GREGEEDYLHGAVALALACDTPVVATNDVRFLRTQDFEAHEARVCIHEGRTLDDPRRPRH 232

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YL+  SEM  +F+DLPEALENTVEIARRC+  L + +  LP F   E   I+   
Sbjct: 233  YSEQQYLRTSSEMAELFADLPEALENTVEIARRCNLELTLGSHYLPNFPVPEGLSIEAFL 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E E R      L          +      Y  RL  EL VI +M F GYFLIVADFI+WA
Sbjct: 293  EVEARRGLEQRLAKLYPSETDREIKQP-TYETRLAEELAVINQMGFPGYFLIVADFIRWA 351

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            KKN IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+S+PDFDIDFC +RR
Sbjct: 352  KKNGIPVGPGRGSGAGSLVAYALQITDLDPLAFDLLFERFLNPERVSLPDFDIDFCMERR 411

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI YV + YG + V+QIIT+GS+ AKA +RDVGR L  PY  VD++ KLIP D    +
Sbjct: 412  DRVIEYVSHYYGRDHVSQIITYGSMAAKAVVRDVGRVLGHPYGFVDQIAKLIPFDLKMTL 471

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+ +    R     +  V  L+++++KLEGL R+A  HA G+VI  + L++ VP Y 
Sbjct: 472  D-KALEESEGLRARYEEEEEVRFLIDLARKLEGLTRNAGKHAGGVVIAPKKLTEYVPYYC 530

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIP 602
            +  +   VTQF+   IE  GL+KFDFLGL+TLT++  +L  + Q+  +      DL+L+P
Sbjct: 531  EQGASGVVTQFDKDDIEAIGLVKFDFLGLRTLTIIDWALQAINQQRAQQGTAPLDLALLP 590

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--V 660
             +D E+Y LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP+ + +   
Sbjct: 591  MNDPESYALLKRCATTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDD 650

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y NRK+G+ K+   HP ++P+LK T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK
Sbjct: 651  YINRKHGRAKVDYPHPALEPILKPTYGVIVYQEQVMQIAQVLAGYTLGGADLLRRAMGKK 710

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              EEM KQ+  F  GA   G+ +  A  IF+L+ KFA+YGFNKSH+AAYA+I+YQTA++K
Sbjct: 711  KPEEMAKQRAIFTEGAKARGVEEERATAIFDLMEKFAEYGFNKSHSAAYALIAYQTAYLK 770

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSL 839
             HYP  ++AA ++ +MDN EK+  F Q+ +  N++++PP VN     F   G N I Y L
Sbjct: 771  AHYPAPYMAAVLSSDMDNTEKVAAFIQECQVMNLEVLPPDVNVSDYRFSAQGKNAIRYGL 830

Query: 840  AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIKGVG      I++      P+  L +FC R+D +K+NRRVLE+L  +GALD  G +R
Sbjct: 831  GAIKGVGAAALEGIIKEREQHGPYQDLFEFCRRIDLRKINRRVLEALNRSGALDPLGANR 890

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKFSVENSSVRFENEQR 957
              L  SL+     A+   +N +    ++F  +     S      +    +   R   E+ 
Sbjct: 891  ATLEASLETALALAEQHSRNTSLGQNDLFGLDCVLEGSQAGNYTETQEWDEEQRLALEKE 950

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-----GNNIRLAAMVVSKQQKKTRKG 1012
             LG Y SGHP+D Y+  LR++  +   E V+           + +A ++ S +  K R+G
Sbjct: 951  TLGLYLSGHPIDRYEQELRQIAPRRLAELVSQASNRLNYNQRVIIAGLIGSVRTSKARQG 1010

Query: 1013 SRIGWVTFSEPAKEYEA 1029
             R  +VT  + +   E 
Sbjct: 1011 GRNAFVTLDDRSARLEV 1027


>gi|312796952|ref|YP_004029874.1| DNA polymerase III alpha subunit [Burkholderia rhizoxinica HKI 454]
 gi|312168727|emb|CBW75730.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Burkholderia
            rhizoxinica HKI 454]
          Length = 1198

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1044 (39%), Positives = 608/1044 (58%), Gaps = 37/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++ +++ A D Q A+A+TD  N F  + F + A A
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDAVERAAEDGQGALALTDLANAFGLVRFYKAARA 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PI+G  + +   D+                ++LLV    GY  L EL+SR +L +Q
Sbjct: 60   HGVKPIVGADVWVSNPDDRDKPA----------RLLLLVKDRRGYLNLCELLSRAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +   WL+    EGL+ L+G   G I  A    + Q A +    +  +F +  Y+
Sbjct: 110  YRGRAEVDCQWLETGLAEGLLALSGAQHGDIGIALAAGNVQAATRHAQRWAAIFPNAFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR R         Q V+LA   +LP+VAT+   F++ ED+ AH+  + ++   +++  
Sbjct: 170  ELQRMRQPGVEAYVQQAVELAAQLKLPVVATHPVQFMTPEDFTAHEARVCISEGDILANP 229

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R + D Y   + +M  +F+D+P AL NTVEIA+RC+  L++  P LP F   +   
Sbjct: 230  RRAKRFSTDQYFFTQQQMGELFADIPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIA---KGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GLE RL Q       +    Q Y++RL FE + I +M F GYFLI
Sbjct: 290  L----DDYLVQLSKTGLEQRLEQLFPDATQRNARRQTYQERLAFECDTIIKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ A+AL ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAFALGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQD RD VI+YV++KYG + V+QI TFG++ AKAA+RD+GR L + Y+  D + KLI
Sbjct: 406  IDFCQDGRDRVIQYVKSKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYNFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++ + +E    +  V +LLE++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPQLQERFDNEDEVRQLLELAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPGP+
Sbjct: 586  WSLAQVPLDDPASFTILKNANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+E +    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREMVEYPDPRVEPILKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+S   A  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAKHRELFREGAAKNGLSAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+M+L MD+ +K+K   +D    ++ ++PP +N     F+   +  
Sbjct: 766  TAWLKVHHPAEFMAANMSLAMDDTDKVKILFEDCIANHLAVLPPDINQSAYRFEPVADAP 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L AIKG G      I+ A   +PF  L DFC RVD + +NRR +E+L+ A
Sbjct: 826  GKRSKTIRYGLGAIKGSGQNAIEEILRARESQPFSDLFDFCERVDRRIVNRRTIEALIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R QLL S+    + A+    N       +F    G+   +  L        
Sbjct: 886  GAFDSLHENRAQLLASVPLAMEAAEQASANAL--QGGLFDMPDGSSGHQHELVDEPAWTE 943

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              + + E+  LGFY SGH  D YK  +R+   +   E           +A ++ + + + 
Sbjct: 944  KRKLQEEKAALGFYISGHLFDAYKDEVRRFVRQKIGELKEGRDK---VIAGVITAMRTQM 1000

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1001 TQRGK-MLVAVLDDGTGQCEVTVF 1023


>gi|14194702|sp|Q9XDH6|DPO3A_PSEFL RecName: Full=DNA polymerase III subunit alpha
 gi|5531684|gb|AAD44402.1|AF062919_1 DNA polymerase III [Pseudomonas fluorescens]
          Length = 1173

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1065 (39%), Positives = 606/1065 (56%), Gaps = 57/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  
Sbjct: 1    MP--ASFVHLRLHTEYSLVDGLVRIKPLVKALTGMGMPAVAVTDQNNMCSLVKFYKNAMG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI G  L +  +D          P   +  I LLV  A+GY+ L EL+SR ++  Q
Sbjct: 59   AGIKPICGADLWLSNKD----------PDGPLSRISLLVMNAQGYRNLTELISRGFIDGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                V I   W+ E   EGLIML+    G I  A    +   AE     +  +F DR Y+
Sbjct: 109  RNGMVIIEREWVAE-ANEGLIMLSAAKEGEIGMAMIGGNPAEAEALAREWMAVFPDRFYL 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR +R  D  +    V LA     PLVATN+  F+ +ED+ AH+  + +     +   
Sbjct: 168  EIQRTNRPNDEEQLHGAVALADKLGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDP 227

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R +  +   YLK+  EM  +FSDLP+A+ENTVEIA+RC+  +++    LP +   +   
Sbjct: 228  RRSKNYSDQQYLKSAEEMAELFSDLPDAIENTVEIAKRCNIDVKLGKHFLPDYPIPDGMT 287

Query: 303  IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            I    +   R  +  GLE R                 Q Y  RL+FEL++I +M F GYF
Sbjct: 288  I----DEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 344  LIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV RA    +   DRL K
Sbjct: 404  FDVDFCMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSFGLADRLSK 463

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            ++P +    +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI   
Sbjct: 464  MVPFEVGMTLE-KAYEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPT 522

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592
             L+   P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +      
Sbjct: 523  KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +D++ IP DD  TY LL    T  +FQLES GM++ ++ ++ DC+ED+IALV+L+RP
Sbjct: 583  EPPLDIAFIPLDDKPTYQLLQKAETTAVFQLESRGMKELIKKLKLDCLEDLIALVALFRP 642

Query: 653  GPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +   + NRK+G+ ++   HP      + P+L  T G+I+YQEQVMQIAQ+++GY
Sbjct: 643  GPLQSGMVDDFINRKHGRAELAYPHPDYQYEGLQPVLAPTYGIILYQEQVMQIAQVMAGY 702

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  FI G + N I   +A NIF+L+ KFA YGFNKSH
Sbjct: 703  TLGGADMLRRAMGKKKPEEMAKQRGGFIEGCASNNIDADLAGNIFDLVEKFAGYGFNKSH 762

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAY ++SYQTAW+K HYP  F+AA ++ +M N +K+    ++ R   +++  P VNT  
Sbjct: 763  SAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822

Query: 826  VDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F V D  RI Y L AIKGVG      I EA    PF  L DFC+RVD K++N+R L+ 
Sbjct: 823  FKFTVNDEGRIVYGLGAIKGVGEGPVEAITEARQAGPFKDLFDFCARVDLKRINKRTLDG 882

Query: 885  LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+ +GALD  G                +R  LL +++   K A+   + R + H ++F  
Sbjct: 883  LIRSGALDRLGPYFHDEQKAYQANIDRNRAVLLAAMEEAIKSAEQTARTRDSGHADLFGG 942

Query: 930  E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +          K        R + E+  LG Y +GHP+D Y+  +R+   +   +  
Sbjct: 943  LFVEEDADVYAIHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +A M+++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1003 PARDTQ--TVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045


>gi|170723228|ref|YP_001750916.1| DNA polymerase III subunit alpha [Pseudomonas putida W619]
 gi|169761231|gb|ACA74547.1| DNA polymerase III, alpha subunit [Pseudomonas putida W619]
          Length = 1174

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1060 (38%), Positives = 591/1060 (55%), Gaps = 56/1060 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS +SL++G + +  +   +A    PA+AITD +N+ + ++F + A  AGI+PI
Sbjct: 5    FVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCALVKFYKAAMGAGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L +           G  P   +  I  L    +GY+ L EL+SR +   Q    V 
Sbjct: 65   CGADLWLA----------GADPEAPLSRICFLAMNPKGYRNLTELISRGWTDGQRNGLVI 114

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
            +   W+    +EGLI L+ G  G I  A     +  AE  L  +  +F +R YV +QR +
Sbjct: 115  LQREWIA-PASEGLIALSAGKEGDIGMALMAGRTTEAEALLHDWMGMFPERFYVEVQRTN 173

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
            R  D       V LA     PLVATN+  F+ + D++AH+  + +     +    RPR+ 
Sbjct: 174  RVGDEEYVHAAVALADKVGAPLVATNDVRFIKQSDFDAHESRVCIGEGWTLDDPRRPRMY 233

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   YLK+  EM  +FSDLP+A+ NTVEIA+RC+  +Q+    LP F       I    +
Sbjct: 234  SDQQYLKSADEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI----D 289

Query: 309  NELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            + LR+ +  GLE         +         Q Y  RL FEL++I +M F GYFLIV DF
Sbjct: 290  DYLRHVSHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDF 349

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 350  IKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFC 409

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D RD VI YV + YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP + 
Sbjct: 410  MDGRDRVIDYVADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 469

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +   R+    D     + +++ KLEG+ R    HA G+VI    L+   
Sbjct: 470  GMTLE-KAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFS 528

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598
            P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ +           V++
Sbjct: 529  PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMETINREQAKNNLPDVNI 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD +TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + 
Sbjct: 589  DFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 648

Query: 659  VVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V +                   +  + P+L  T G+I+YQEQVMQIAQ+++GY+L  AD
Sbjct: 649  MVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGAD 708

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY +
Sbjct: 709  MLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 768

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VN     F V 
Sbjct: 769  VSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLIEEVRSMKLRLDAPDVNASEFKFTVN 828

Query: 832  -DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D RI Y L AIKGVG      I+EA     PF  L DFC RVD K++N+R L++L+ +G
Sbjct: 829  DDGRIIYGLGAIKGVGEGPVEAIVEARDQGGPFKDLFDFCERVDLKRVNKRTLDALIRSG 888

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KG 932
            ALD  G                +R  LL +L+   K A+   +   + H ++F     + 
Sbjct: 889  ALDRLGPHFHDEIKAYHASIDINRATLLSALEEAIKAAEQTARTADSGHVDLFGGLFVEE 948

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                     K        R + E+  LG Y +GHP+D Y+  +R+   +   +   +   
Sbjct: 949  DSDVYANHRKVRELTLKERLKGEKDTLGVYLTGHPIDEYEGEIRRFARQRIIDLKPSRET 1008

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A M+++ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1009 Q--TIAGMIIAMRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046


>gi|120599537|ref|YP_964111.1| DNA polymerase III subunit alpha [Shewanella sp. W3-18-1]
 gi|120559630|gb|ABM25557.1| DNA polymerase III, alpha subunit [Shewanella sp. W3-18-1]
          Length = 1157

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1047 (39%), Positives = 600/1047 (57%), Gaps = 37/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NN    ++F      
Sbjct: 1    MSD-PRFVHLRVHSDFSMSDGVAKVKPILAQVEALGMAAVALTDQNNFCGLVKFYSGCHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q         ++ ++     GYQ L +++S+ YL  Q
Sbjct: 60   AGIKPIIGADFWM----------QVPGFEGEFCALTIIAMNNVGYQNLTQIISQAYLRGQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                V I   WL     EG+++L+G   G I +A    ++   E     ++  F +R ++
Sbjct: 110  VAGRVVIDQEWLLTY-NEGILLLSGAKEGDIGKALLKGNNTQVESLCEFYQTHFAERYFL 168

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R     V LA     P+VATN  +FL  ED++AH++ +A+     ++  
Sbjct: 169  ELIRTGRPDEERYLHMAVALAQEKGFPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   YL++  EM  +F+D+P AL NTVEIA+RC+  ++++              
Sbjct: 229  RRPKKYSEQQYLRSEEEMCELFADIPAALSNTVEIAKRCNVTIRLYEYF-----LPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L + +  GLE RLA         A+   +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMSIEDFLVDCSKKGLEERLAFLFPDPQVRAERRGEYDERLDIELQVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   +   +E+  AD  V  L+++ +KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPEPGMTL-AKAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +          
Sbjct: 523  TDFAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PVRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP VN     
Sbjct: 763  AYALVSYQTLWLKTHFPSQFMAAVMSADMDNTDKIVTLVDECERMGLTLIPPDVNKGLFK 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+
Sbjct: 823  FTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLI 882

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945
             AGALD  G  R  ++ +L    + A    K +     ++F        D K    +   
Sbjct: 883  CAGALDSLGPHRASMMATLPEAMRAADQHAKAQAIGQHDMFGLLNSEPEDSKQQFVECIP 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ +
Sbjct: 943  WPDKIWLEGERETLGLYLTGHPINQYLKELKYYTSGRLKDVHPTERGKTVKAAGLVVATR 1002

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++GS++G +T  + +   E   F
Sbjct: 1003 VMLTKRGSKMGLLTLDDKSARLEVMLF 1029


>gi|315111545|ref|YP_156071.2| DNA polymerase III subunit alpha [Idiomarina loihiensis L2TR]
          Length = 1158

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1048 (39%), Positives = 602/1048 (57%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P+FVHL+VHS +S+++G   +  I + +A    PA+AITD  N    + +  KA  
Sbjct: 1    MT-APNFVHLRVHSDFSMIDGLAKVGPICEAVAEAGMPALAITDQMNFCGLVRYYGKAHQ 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++P+IGC   +          Q   P   +  +  L    EGYQ++ +L+S+ YL   
Sbjct: 60   LGLKPLIGCDFWV----------QADYPESEIFRLTALAMDNEGYQQITQLISKAYLRGN 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K    I   WL+E   EG+I+L+G   G + +A         +  L  +++ F DR Y+
Sbjct: 110  IKGKPVIDKDWLKE-HNEGIILLSGSRQGDVGQALIKGHDSQLDAALDFYQQYFPDRYYL 168

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     +     + V LA    LP+VATN  +FL EED++AH++ +A+     +  K
Sbjct: 169  ELVRTGRPQEENYLHKAVALAGETGLPVVATNEVVFLKEEDFDAHEIRVAIHDGYQLEDK 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL++  EM  +FSD+PEA+ENTVEIA+RC+  +++           +   
Sbjct: 229  RRPKKYSPQQYLRSSEEMSELFSDIPEAIENTVEIAKRCNVTVRLGEYF-----LPKFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E  L   +  GLE RL      A  +     +Y +RL  EL VI  M F GYFLI
Sbjct: 284  GDLTTEEFLIKVSEEGLEERLEFLFPDAEEREQKRPEYDERLKRELGVINDMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V + YG E V+QIITFG++ AKAA+RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDRRDEVIDHVADLYGREAVSQIITFGTMAAKAAIRDVGRVLAHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +   A   D  V  ++++++ LEG+ R+A  HA G+VI    +
Sbjct: 464  PGDPGMTL-AKAFEIEPQLGAAYDQDEEVKAIIDMARILEGVTRNAGKHAGGVVISPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++Q ++D + +R       
Sbjct: 523  TDFSPLYCDDEGNNPVTQFDKDDVESAGLVKFDFLGLRTLTIIQWAVDMVNRRHAKSGKD 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ I   D   + LL    T  +FQLES GM++ ++ + PD  EDIIALV+L+RPGP
Sbjct: 583  PIDITSIDLTDPACFKLLKKAETTAVFQLESRGMKELIKKLLPDSFEDIIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  + P+L+ T GVI+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDAEYQHESLQPILEPTYGVILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+E F  GA++N I   +A  IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQREIFAKGAAQNNIDPELATKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT WMKTH+P EF+AA M+ +MDN +KI     +  +  + ++PP VN     
Sbjct: 763  AYALVSYQTLWMKTHFPAEFMAAVMSADMDNTDKIVTLADECERMGLDLLPPDVNKGEYK 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +  R+ Y + AIKGVG      I++A     PF  L DFC RVD K++N+R+L+ L
Sbjct: 823  FTVDEQQRVVYGIGAIKGVGEAPIESIIKARQEGGPFRDLFDFCCRVDLKRMNKRILQRL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + AGA+D  G  R  L+ +L+   + A+           ++F        + +       
Sbjct: 883  IRAGAMDNLGPHRASLMATLEKAIRQAEQHLNAEKIGQSDMFGVLTTEPEAVEQEFVSVR 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              + +V  E E+  LG Y +GHP++ ++  L+            T +  +I +A +V+  
Sbjct: 943  KWSEAVWLEGERDTLGLYLTGHPINRFRAELKHYINSTLSNVTPTRKDESIAIAGLVIDV 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +    ++G R   VT  +     +   F
Sbjct: 1003 RVLTNKRGQRFAIVTLDDKTARMDVRLF 1030


>gi|311694160|gb|ADP97033.1| DNA polymerase III, alpha subunit [marine bacterium HP15]
          Length = 1145

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/1034 (38%), Positives = 593/1034 (57%), Gaps = 41/1034 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G + +  ++ ++A    PA+ +T+ +N+ S + F + A  AG++PIIG  L ++  D
Sbjct: 1    MVDGLVRVKPLIKRVAELGMPAVGLTEQSNMCSLVRFYKAAMGAGVKPIIGADLWLENPD 60

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
              +              I LL    +GY  L E++S  Y   Q      I   WL+    
Sbjct: 61   EPE----------NPFRITLLARDNDGYLNLTEIISLGYTEGQRFGKPIIQRKWLEARPN 110

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY-DRYRESQV 200
             GLI L+G   G + +A      ++A +R   +  L+ D  Y+ LQR     D       
Sbjct: 111  -GLIALSGSRMGDVGKALMAGKPELARERARYWMDLYPDSYYLELQRTGRPGDEDCLHLS 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRVTPDHYLKNRSE 259
            V+LA    LP+VATN+  FL  ED+EAH+  + +  S  +    R  R +   YL++  E
Sbjct: 170  VELAGALGLPVVATNDVHFLEAEDFEAHEARVCIGESRTLDDPRRDRRFSDQQYLRSADE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M+ +FSD+PEA+ENTVEIARRCS  +++    LP +   +        ++  R  +  GL
Sbjct: 230  MIELFSDIPEAIENTVEIARRCSVKVRMGEYFLPNYPIPDGM----TMDDYFRKVSEEGL 285

Query: 320  EVRLAQ----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
            E RLA+             + Y +RL+FEL++I +M F GYFLIV DFI+WAK N +PVG
Sbjct: 286  EERLAKTLSKDDPEYDAKREAYYKRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPVG 345

Query: 376  PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
            PGRGSGAGS+ AYA  ITD+DPL + LLFERFLNP+R+SMPDFD+DFC + RD VI Y  
Sbjct: 346  PGRGSGAGSLVAYAQLITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMEGRDRVIEYTA 405

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
             KYG E V+QIITFG++ AKA +RDV R     Y   D+L K+IP +P   +  +A+  +
Sbjct: 406  QKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPFEPGMTLE-KALEQE 464

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
             +  E    D     + E++ KLEG+ R+A  HA G+VI    ++   P+Y D      V
Sbjct: 465  PQLVEFLENDEEAQEIWEMALKLEGVCRNAGKHAGGVVIAPTKITDFSPLYCDDEGGSLV 524

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYH 610
            TQF+   +E AGL+KFDFLGL+TLT+++ +L+ +  R        +D++ IP DD  ++ 
Sbjct: 525  TQFDKGDVEDAGLVKFDFLGLRTLTIIKWALNMINPRREKKGMQPLDINEIPLDDVPSFD 584

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YNN 663
            +L    T  +FQLES GM+  +  +QPD +ED+IALV+L+RPGP+ + +V       +  
Sbjct: 585  MLKKAETTAVFQLESRGMKDLIRRLQPDSLEDMIALVALFRPGPLQSGMVDDFIDRKHGR 644

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            +          +  + P+L+ T GVI+YQEQVMQIAQ+++GY+L  AD+LRRAMGKK  E
Sbjct: 645  QPMSFPHPDYQYEGLKPVLEPTYGVILYQEQVMQIAQVMAGYTLGNADMLRRAMGKKKPE 704

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM KQK+ F+ G  +NGI+ T+A NIF+L+ KFA YGFNKSH+AAYA++SYQT W+K HY
Sbjct: 705  EMAKQKQFFLDGCEQNGINTTLAENIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 764

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAI 842
            P EF+AA +T +M N +K+    ++ R   + ++ P V+     F V D  +I Y L AI
Sbjct: 765  PAEFMAAVLTADMQNTDKVVTLVEECRNMKLDLLVPDVSRSEYTFTVNDEGQIVYGLGAI 824

Query: 843  KGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KG+G    + I+E   D  PF  + DFC RVD KK+N+R +E+L+ +GA+D  G SR QL
Sbjct: 825  KGLGEGPIQSIVEGRGDGEPFQDIFDFCRRVDLKKVNKRAMEALIRSGAMDKLGASRAQL 884

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS---VENSSVRFENEQRV 958
            + S+D   + A    +N +    ++F             E  +         R + E+  
Sbjct: 885  MASIDKAVQQADQQSRNESVGMMDMFGEMLEAGDGGDPYEDVAGVREWPEKQRLKGEKDT 944

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG Y +GHP D Y+  +R+       +       +  R+A +VV+++  KTR GS + ++
Sbjct: 945  LGLYLTGHPFDEYEKEVRRFVRSSIADLK--PNKSPQRVAGLVVAQRTMKTRTGSTMCFI 1002

Query: 1019 TFSEPAKEYEANFF 1032
            T  + +   EA  F
Sbjct: 1003 TLDDRSARIEATLF 1016


>gi|330968945|gb|EGH69011.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aceris
            str. M302273PT]
          Length = 1173

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1065 (38%), Positives = 598/1065 (56%), Gaps = 57/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  
Sbjct: 1    MP--ASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PI G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q
Sbjct: 59   SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   W+ +  +EG+I L+    G I  A    +   A++ L  + ++F DR Y+
Sbjct: 109  RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYI 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +   
Sbjct: 168  EVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDP 227

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R    +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   
Sbjct: 228  RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287

Query: 303  IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            I    +   R  +  GLE R                 Q Y  RL+FEL++I +M F GYF
Sbjct: 288  I----DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 344  LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K
Sbjct: 404  FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP +    +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI   
Sbjct: 464  MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPT 522

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592
             L+   P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +      
Sbjct: 523  KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +D++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RP
Sbjct: 583  EEPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642

Query: 653  GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            G + + +V +               +   +  + P+L  T G+I+YQEQVMQIAQ+++GY
Sbjct: 643  GLLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH
Sbjct: 703  TLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSH 762

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAY ++SYQTAW+KTHYP  F+AA ++ +M N  K+    ++ R   +++  P VNT  
Sbjct: 763  SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTNKVVTLIEEVRTMKLRLDAPDVNTSE 822

Query: 826  VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F V  D RI Y L AIKGVG      I +A  + PF  L DFC+RVD K++N+R L+ 
Sbjct: 823  FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDG 882

Query: 885  LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+ +GALD  G                +R  LL +L+   + A+   ++R + H ++F  
Sbjct: 883  LIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGG 942

Query: 930  E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +          K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +  
Sbjct: 943  LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|227494658|ref|ZP_03924974.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436]
 gi|226831840|gb|EEH64223.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436]
          Length = 1176

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1066 (33%), Positives = 573/1066 (53%), Gaps = 48/1066 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL  H+ YS+L+GA  +  ++ + A  +QPA+AITD   LF A EF  +A  
Sbjct: 1    MAVTDPFVHLHNHTEYSMLDGASKIAPMVKEAARLEQPALAITDHGYLFGAYEFYSEARK 60

Query: 65   AGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
            AGI+PIIG +  +                    +   +       + LL  T EG   L 
Sbjct: 61   AGIKPIIGLEAYVTPGTSRFDRTRVRWGEEWQASDDVSARGAYTHLTLLAETTEGMHNLF 120

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             L S   L  Q  +  R  +  L++  ++GLI  TG  S  +           A +    
Sbjct: 121  RLGSMASLDGQWGKWPRADMELLEQY-SKGLIAFTGCPSSEVQTRMRLGQWDKAVEAAGR 179

Query: 174  FKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             + +FG + ++V    H    ++   + +++L+    +P+V TN++ +++ +D +  D L
Sbjct: 180  LQDVFGKENVFVEFMDHGIDIEKRTRADLIKLSNQLNIPMVVTNDAHYVTADDRDIQDAL 239

Query: 232  MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + +     +   DR +     +Y+++   M   + D+P+A +NT+ IA RC+        
Sbjct: 240  LCINSGVTLDTPDRFKFDGSGYYIRSSESMRRDWEDIPQACDNTLLIAERCNVEFTEGVS 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             +PRF   E +D    E +    +   GL +R  QG         + R++ D+E+ +I +
Sbjct: 300  YMPRFPVPEGED----ETSWFIKEVERGLHIRFPQG------IPDNVRKQADYEVGIINQ 349

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            MKF GYFL+V+DFI+WAKK  I VGPGRGSGAGS+ AYA+ ITD++PL   LLFERFLNP
Sbjct: 350  MKFPGYFLVVSDFIRWAKKQGIRVGPGRGSGAGSMVAYAMQITDLNPLDHGLLFERFLNP 409

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFD+DF + RR EVI YV  KYG +RVAQ++T+G ++AK AL+D  R L  PY+
Sbjct: 410  ERVSMPDFDVDFDERRRGEVIEYVTRKYGDDRVAQVVTYGKIKAKQALKDSCRVLGRPYA 469

Query: 471  QVDRLCKLIPND-PAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
              ++L K +P       +          +   + + FR     +P    ++++++ LEGL
Sbjct: 470  LGEQLTKAMPPSVMGKDIPVSGIFDKEHKRYEEAAEFRRYYNENPETHPIVDMAKGLEGL 529

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R    HA  +++   PL Q++P+ +  +    +TQF+    E  GL+K DFLGL+ LT+
Sbjct: 530  TRQWGVHACAVIMSSVPLQQVIPLMQRPQDGATITQFDYPTCESLGLLKMDFLGLRNLTV 589

Query: 582  LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +LD + +    + D+  +  +D +TY LL+   TLG+FQL+  GM++ L+ M PD  
Sbjct: 590  ISDALDNIERNGKERPDIDHVELNDPKTYQLLSAGETLGVFQLDGDGMQKLLKRMAPDNF 649

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQ 694
            EDI A+ +LYRPGP+  D+   Y +RKNG+ +I  IHP +   LK     T G+I+YQEQ
Sbjct: 650  EDISAVGALYRPGPMGADSHNKYADRKNGRAEIEPIHPELAEPLKEILGTTYGLIVYQEQ 709

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VM IAQ ++GYSL +AD+LRRAMGKK KE +DK+   F +G  + G S+     ++E+L 
Sbjct: 710  VMAIAQKVAGYSLGQADLLRRAMGKKKKEILDKEYVPFHAGMIERGYSEDCIKTLWEILV 769

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F++Y FNKSH+AAY ++SY TAW+K +YPVE++A+ +T + DN +K+  +  + R+  I
Sbjct: 770  PFSNYAFNKSHSAAYGLVSYMTAWLKANYPVEYMASLLTSQKDNKDKLALYLSECRRMGI 829

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVD 873
             ++PP VN    +F    N I + LAAI+ VG      I+EA  +   +DS   F  +V 
Sbjct: 830  TVLPPDVNVSEANFTAVGNDIRFGLAAIRNVGINVVEGIVEARKEKGKYDSFASFLDKVP 889

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
                N+R +ESL+ +GA D     R  L+   +   + A  +++N      ++F     +
Sbjct: 890  VAVCNKRTIESLIKSGAFDSVADCRRALVAVHEEAVESAVKLKRNEAAGQFDLFGAMFDS 949

Query: 934  FSDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--- 987
               +   + +          +  +E+ +LG Y S HPL   +  L +   +   + +   
Sbjct: 950  AEVQMMTVDVPNMPDWPKHEKLSHERDMLGLYVSDHPLSGIQKALERYQDEQIAQILTSE 1009

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +     +++A ++ +   K TRKG      T  + +   +  FFP
Sbjct: 1010 TSRDRQMVKVAGLITAVTIKTTRKGELWAIATLEDLSGSIDLLFFP 1055


>gi|317969748|ref|ZP_07971138.1| DNA polymerase III subunit alpha [Synechococcus sp. CB0205]
          Length = 1179

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1055 (36%), Positives = 579/1055 (54%), Gaps = 38/1055 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++ +      PAIA+TD   ++ A+E  +    + ++P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPAMVKRAEELGMPAIALTDHGVMYGAIELLKLCRGSSVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +            K        +V+L   A GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPNPPKK---ERRYHLVVLAKNAVGYRNLVKLTSISHLRGMRGRGI 118

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L E  +EGLI+ T    G I +A       VA      ++ +FGD  Y+ 
Sbjct: 119  FSRACIDKPTL-ERHSEGLIIATACLGGEIPQAILRGRPDVARDVARWYQGVFGDDFYLE 177

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++ +++    +PLVATN++ +L+  D EAHD L+ V    +V+ + 
Sbjct: 178  IQDHGSPEDRIVNVEMAKISKELGIPLVATNDAHYLTSNDAEAHDALLCVLTGKLVTDEK 237

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R R T   ++K+  EM+ +F+D   PE +   V      +  ++ +  +    + +    
Sbjct: 238  RLRYTGTEFIKSEQEMLGLFADHLEPEVVAEAVANTALVAEKVEDYDILGRYQMPRFPIP 297

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                  + LR     GL  RL  G          Y +RL FEL V+ +M F  YFL+V D
Sbjct: 298  EGHTPVSYLREVTEQGLRARL--GLPEGSGFEATYGERLAFELQVMEQMGFPTYFLVVWD 355

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I++A+ N IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 356  YIRFARDNGIPVGPGRGSAAGSLVAYALGITNIDPVTNGLLFERFLNPERKSMPDIDTDF 415

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KLIP  
Sbjct: 416  CIERRGEVIDYVTERYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 475

Query: 483  PAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
               P  L+ +  +      FRE  L DP+V R ++++ ++EG  +    HAAG+VI   P
Sbjct: 476  RGKPAKLKEMIGEESPAPEFREKYLGDPAVKRWVDMAMRIEGTNKTFGVHAAGVVIAADP 535

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597
            L ++VP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K++D + Q   V +D
Sbjct: 536  LDEVVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTVDLVKQSSGVSID 594

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               +P DD  T+ LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYRPGP+D 
Sbjct: 595  PDALPLDDEGTFGLLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPGPLDA 654

Query: 658  --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  + NRK+G+E I   H  ++P+L+ET G+++YQEQ+M+IAQ L+GYSL EAD+LRR
Sbjct: 655  GLIPKFINRKHGREAIDFAHAKLEPILQETYGIMVYQEQIMKIAQDLAGYSLGEADLLRR 714

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK   EM K ++ F+ GAS+ G+   IA  +F+ +  FA+Y FNKSH+ AY  ++YQ
Sbjct: 715  AMGKKKVSEMQKHRDIFVKGASERGVDAKIADELFDQMVLFAEYCFNKSHSTAYGAVTYQ 774

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYPV ++AA +T+   + +K++++  +     I++MPP VN   +DF    +RI
Sbjct: 775  TAYLKAHYPVAYMAALLTVNAGSTDKVQRYISNCNAMGIEVMPPDVNASGIDFTPVGDRI 834

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L+A++ +G    R ++EA  +D PF SL D C R+    LNRR LE+L+  GA+D  
Sbjct: 835  LFGLSAVRNLGEGAIRALLEARSSDGPFQSLADLCDRIPGTTLNRRSLEALIHCGAMDAL 894

Query: 895  GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--------------HEKGTFSDKI 938
                +R QL+  LD I  +A    ++R +   N+F                     S   
Sbjct: 895  EPEANRAQLMADLDLIVDWASSRARDRASGQGNLFDLFAAPASGDAEETQGGGSDLSTAP 954

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
                      + +   E+ ++GFY S HPL      ++ +   G            + + 
Sbjct: 955  KAAPVKDYPPTEKLRLEKELVGFYLSDHPLKQLTRPVQLLSPVGLGGLEEQADKARVSVV 1014

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             MV   +   TRKG R+  +   + +   EA  FP
Sbjct: 1015 GMVSGLRPVTTRKGDRMAVLQLEDLSGSCEAVVFP 1049


>gi|259417587|ref|ZP_05741506.1| DNA polymerase III subunit alpha [Silicibacter sp. TrichCH4B]
 gi|259346493|gb|EEW58307.1| DNA polymerase III subunit alpha [Silicibacter sp. TrichCH4B]
          Length = 1166

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 496/1057 (46%), Positives = 692/1057 (65%), Gaps = 47/1057 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  SP F+HL+ H+ YSLLEGA+ L  + D  +++Q PAIA+TDTN++F+ALEFS     
Sbjct: 1    MTASPRFIHLRTHTEYSLLEGAVRLKKLPDLCSSNQMPAIAVTDTNSMFAALEFSVTLSG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPIIGCQ+D+      + ++ G+ P    P +VLL     GY+ L+ L S +Y+ + 
Sbjct: 61   AGIQPIIGCQVDLT----FEKSDPGEKPKFPAP-VVLLAQNEAGYEHLMRLSSCLYVNNG 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G Q  ++ L  L E  + GLI LTGG  GPI +         AE  +   K++F DRLYV
Sbjct: 116  G-QLPQVSLEEL-EANSAGLICLTGGPEGPIGKLLQQGQRPAAEALMQRLKEMFPDRLYV 173

Query: 185  NLQRHRGYDRYRESQVV------QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G D   E++ +      ++AY  +LPLVATN+  F   E YEAHD L+ +A   
Sbjct: 174  ELQRHPGEDGQPEAETLTERGHVEMAYAMDLPLVATNDVYFPKTEMYEAHDALICIAEGA 233

Query: 239  VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+T  HY K++ EM+++F+DLPEA+ENTVEIA+RC+F+            +
Sbjct: 234  YVDQAEPRRRLTAQHYFKSQEEMIALFADLPEAIENTVEIAQRCAFMAY--------RRD 285

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    +E +ELR +A  GL+ RLA   I      + Y++RLDFEL +I  M F GYF
Sbjct: 286  PILPKFADDEVDELRRQANEGLQQRLA--VIPHAVPVEKYQERLDFELGIIESMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+W K+  IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWGKEQGIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMP+ QVDRL K
Sbjct: 404  FDIDFCMDRREEVIKYVQQKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPFGQVDRLSK 463

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS++  + D+ R  E    +P VDRLL   Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALQDEPRLAEEARNEPVVDRLLTYGQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT+++ ++  + + G  +
Sbjct: 524  RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIENAMKLIFKSGRDL 583

Query: 597  DL------------------SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
             +                  +LIP DD  TY+L +   T+ +FQ+ES+GM  AL+ M+P 
Sbjct: 584  HIGADGTELYEPAEGAENQINLIPLDDEVTYNLYSRAKTVAVFQVESTGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI VY   KNG  KI S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPVYCEVKNGLRKITSVHPLIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKIKE MD ++ +F  GA++NG+ K  A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVDKKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   EK+  + ++ ++   +   
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTEKLAIYFEEVKKGLQLPYA 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
             P +N     F V D  + Y+L A+K VG      I+ A  D+PF +L DF  RVD K++
Sbjct: 824  APDINRSLATFDVVDGELIYALGALKNVGVDAMNLIVTARGDQPFVTLYDFARRVDLKRV 883

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             +R LE L  AGA D    +R ++ +SL+ + +Y+  +++ + +   ++F  E G    +
Sbjct: 884  GKRPLEMLARAGAFDVLDSNRRRVFESLEGLVQYSAAIQEQKNSNQVSLFG-EAGDDLPE 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--I 995
              +        + R   E + +GFY +GHPLD Y P L++  +   +E +A         
Sbjct: 943  PRMAGVPDWLPAERLSEEFKAVGFYLTGHPLDDYMPALKRKDVMTLDEVMAKAERGPFMA 1002

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++A +V  +Q++K+ +G+R  +   S+    YE   F
Sbjct: 1003 KMAGVVAGRQERKSARGNRFAFAQLSDTTGAYEVTIF 1039


>gi|153208946|ref|ZP_01947159.1| DNA polymerase III, alpha subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|212218747|ref|YP_002305534.1| DNA polymerase III alpha subunit [Coxiella burnetii CbuK_Q154]
 gi|120575604|gb|EAX32228.1| DNA polymerase III, alpha subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|212013009|gb|ACJ20389.1| DNA polymerase III alpha subunit [Coxiella burnetii CbuK_Q154]
          Length = 1143

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1034 (40%), Positives = 620/1034 (59%), Gaps = 33/1034 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++HS YS+++  + ++ +L +    + PA+A+TD  NLF+ ++F ++A   GI+P
Sbjct: 4    SFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +   D++                  L     G++ LI+L+SR Y+  + +  V
Sbjct: 64   IIGSELLLAEGDDV-------------FRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHV 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL +   EGLI+L+G   G + +A     S +AE+RL  +   F  R Y+ LQR 
Sbjct: 111  LIQWEWLVQ-ANEGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRT 169

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R  +      V++LA  H +P+VATN   FLS+ D+EAH+  + +    ++   +RPR 
Sbjct: 170  RRDQEEEYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPRE 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   Y K+  EM ++FSD+PEALENTVEIA+RCS  L +    LP+F          + 
Sbjct: 230  YSDQQYFKSAEEMTALFSDIPEALENTVEIAKRCSVPLSLGEVFLPKFPVP----ANLKV 285

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+  R +A  GL  RL    +      +DY +RL+ E+ VI +M F+ YFLIVADFI WA
Sbjct: 286  EDYFRAQAKQGLTRRLVGLEMKNNLTHKDYEERLETEITVITKMGFASYFLIVADFIAWA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+++IPVGPGRGSGAGS+ AY+L IT++DPL   LLFERFLN +R+SMPDFDIDFC + R
Sbjct: 346  KQHHIPVGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEGR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI YV  +YG E VAQIIT+G++ A+A LRDVGR L +PY  VD++ KL+P +    +
Sbjct: 406  DRVIDYVAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELGVTL 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +    +    D  V  L++++ KLEGL R+A  HA G+VI    L+  VP+Y 
Sbjct: 466  E-KALEQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPLYS 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVKVDLSLIP 602
            +  SD  VTQF+   +E  GL+KFDFLGL+TLT++  ++  +      Q   ++D+  IP
Sbjct: 525  EPGSDHVVTQFDKDDVEAVGLVKFDFLGLRTLTIINWAVQNINAKRKIQNETELDIGTIP 584

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD +TY LL +  T  +FQLES GM++ +  +QPD   DI+ALV+L+RPGP+ + +V  
Sbjct: 585  LDDPKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMVET 644

Query: 663  NRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
                   +  +  +HP ++P+L+ T GVI+YQEQVMQIAQ+L+GYSL  ADVLR AMGKK
Sbjct: 645  FIACKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMGKK 704

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              EEM KQ+  F+ G    G+ + +A  IF+L+ KF+ YGFNKSH+AAYA+I+YQTAW+K
Sbjct: 705  KPEEMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAWLK 764

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSL 839
             HYP EF+AA ++ +MDN +K+  F  + R  N++++PP++N     F V    +I Y L
Sbjct: 765  AHYPAEFMAAVLSSDMDNTDKVVGFINECRDMNLELLPPNINWSHYPFTVNTKGQIVYGL 824

Query: 840  AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIKGVG   A +I+    A+  F  L +FCSRVD +K+NRR +E L+ +GA+D FG SR
Sbjct: 825  GAIKGVGEAAAMNIVACREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFGVSR 884

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              L +SL    + A+   ++      ++F  E     +     +    N S R   E+  
Sbjct: 885  ASLFESLTKAFQAAEQRNRDMILGQHDLFGEEVKGIDED--YTEVPEWNDSDRLRGEKET 942

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG Y SGHPL      ++ +G        +    N++ +A M++  +   TR G R+  +
Sbjct: 943  LGLYVSGHPLQACIKEMKAVGAVPINHL-SLSEKNSVVVAGMMMGMRTITTRSGKRMAIL 1001

Query: 1019 TFSEPAKEYEANFF 1032
            +  +   + +   F
Sbjct: 1002 SLEDQTGKIDVTLF 1015


>gi|170758690|ref|YP_001788703.1| DNA polymerase III DnaE [Clostridium botulinum A3 str. Loch Maree]
 gi|169405679|gb|ACA54090.1| DNA polymerase III, alpha subunit [Clostridium botulinum A3 str. Loch
            Maree]
          Length = 1185

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1071 (34%), Positives = 593/1071 (55%), Gaps = 55/1071 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            EK P ++ L  H+ YSLL+ +  + +++ K       +IAITD   ++  ++F ++A   
Sbjct: 8    EKKPEWISLHQHTEYSLLDSSAKIADLIKKAKEFGMKSIAITDHGVMYGCVDFYKEAIKQ 67

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PIIGC++ +  +         +        +VLLV    GY+ L+E+VS+   ++  
Sbjct: 68   GIKPIIGCEIYVASKSMYIKQQDKEN---ETHHLVLLVKNEIGYKNLMEIVSKAS-VEGF 123

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                R+   +L++  +EGLI L+    G +       + + AE+  L +K +F +  Y+ 
Sbjct: 124  YYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAEEVALIYKDIFEEGFYLE 182

Query: 186  LQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ H   ++      +V+++   ++PLVATN+  ++ +EDY++HD+L+ +     V +++
Sbjct: 183  LQYHGMEEQLKVNEALVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTVEEEN 242

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R  +   YLK+  EM   FS +PEALENTV+I+  C+F    H   LP+F  +E  D 
Sbjct: 243  RMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEEGVDP 302

Query: 304  QKEEENELRNKAVAG--LEVRLAQGAIAKGYHAQDYR-------------QRLDFELNVI 348
                   LR     G  L   + +  I   +   +               +RL++EL++I
Sbjct: 303  Y----EYLREICFKGLFLRYEVLKDFIDNPFSIDEVLVYGDENKEAFDLIERLNYELSII 358

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M +  YFLIV DFI++A +  I  GPGRGS AGS+ AY L IT IDP++++L+FERFL
Sbjct: 359  KQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFL 418

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NPDR+SMPD D DFC +RR EVI YV  KYG   V+QIITFG++ A+A +RDVGRA+  P
Sbjct: 419  NPDRISMPDIDSDFCYERRGEVIDYVVEKYGKANVSQIITFGTMAARACIRDVGRAMNYP 478

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            Y++VDR+ K+IP+     +  +A+  +   +E    +  V  L+++++ LEGL RH STH
Sbjct: 479  YAEVDRIAKMIPSVLNITID-KALELNPELKETYDDEERVKELIDVARALEGLPRHTSTH 537

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAG+VI  +PL   VP+ ++   +  VTQF M  +E+ GL+K DFLGL+TLT+++ ++  
Sbjct: 538  AAGVVIASQPLVNYVPLQKN--EESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVRI 595

Query: 589  LAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            + +   + +DL  I F+D E Y ++    T+G+FQLES+GM   ++ ++PD +EDIIA +
Sbjct: 596  IRENKGIDIDLDNIDFEDKEVYKMIGQGQTVGVFQLESAGMTSFMKELKPDSLEDIIAGI 655

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            SLYRPGP+  I  Y   KN    I      ++P+L  T   I+YQEQVMQI + L+GYS+
Sbjct: 656  SLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDLAGYSM 715

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADY 759
              +D++RRAM KK  + M++++  FI         G   NGI + +A N+F+ +  FA Y
Sbjct: 716  GRSDLVRRAMSKKKHDVMEQERRNFIYGNGDEGVKGCINNGIDENVANNLFDSMMDFASY 775

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSHAAAYAV+ +QTA++  +YP EF+AA +     + +K+  +   A+   I+I+ P
Sbjct: 776  AFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGIEIVAP 835

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLN 878
            ++N    +F V DNRI + L A+K VG     +I+        F  L DF ++VD+  +N
Sbjct: 836  NINESYSNFTVKDNRIIFGLTAVKNVGERGIDNIVLSREQKGNFTDLSDFFNKVDTSIIN 895

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-- 936
            +R++ESL+ AGA DC    R ++L   + I    Q  ++N      N+F           
Sbjct: 896  KRLVESLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDNKESSM 955

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT------- 989
             I     +  +     + E+ + G YFSGHPL+ Y+  L+        + ++        
Sbjct: 956  DIKYPNINEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTNHHISDIISKESLEGNL 1015

Query: 990  -------IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                     G+ + +  M+    +K TR    + ++   +     E   FP
Sbjct: 1016 VDTVSSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066


>gi|90413544|ref|ZP_01221535.1| DNA polymerase III subunit alpha [Photobacterium profundum 3TCK]
 gi|90325476|gb|EAS41959.1| DNA polymerase III subunit alpha [Photobacterium profundum 3TCK]
          Length = 1158

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/1048 (38%), Positives = 613/1048 (58%), Gaps = 39/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL  HS +S+++G   ++ ++ K+A    PA+A+TD  NL   ++F   A  
Sbjct: 1    MAD-PRFIHLHTHSDFSMVDGLSKVSPLVKKVAEIGMPAMALTDFTNLCGLVKFYFAAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG    +  ++              +  + +L +  +GYQ L  L+S+ YL   
Sbjct: 60   AGMKPIIGADFKVHSEE----------LDNELADLTILAADNDGYQNLTMLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I   WL +  ++GLI+L+G   G + +A    +  +  + +  ++  F D  Y+
Sbjct: 110  VQHQPVIDKEWLAQY-SKGLILLSG-RCGDVGKALLKGNKSLVNRCVEFYQTHFEDSFYL 167

Query: 185  NLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA   +LP+VATN+  F+S E ++AH++ +++     +   
Sbjct: 168  ELVRTGRPDEDAFIHFAVELAANEDLPVVATNDVRFISAEQFDAHEIRVSIHDGYTIVDP 227

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +RP+  +P  YL+   EM  +FSD+PEAL N+VEIA+RC+  +++       +       
Sbjct: 228  NRPKLYSPQQYLRTEEEMCELFSDIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPT 282

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA     +        +Y +RL+ EL VI +M F GYFLI
Sbjct: 283  GDLSTEDFLVVKSREGLERRLAFLFPDEAVRVEKRPEYDERLEIELEVINQMGFPGYFLI 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 343  VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALDITDLDPLEFDLLFERFLNPERVSMPDFD 402

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC D+RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDRL K+I
Sbjct: 403  IDFCMDKRDLVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRLSKMI 462

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   + +  +A  AD  V  L+++ + LEG+ R+A  HA G+VI    +
Sbjct: 463  PAEPGMTL-AKAFEAEPQLGDAYNADEEVKALIDMCRILEGVTRNAGKHAGGVVISPTTI 521

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 522  TDFSPLYCDAEGANPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALALINPRREAEGKE 581

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             ++++ IP  D +++ +L    +  +FQLES GM+  ++ +QPD  ED+IALV+L+RPGP
Sbjct: 582  PINIASIPMADKKSFDMLQRSESTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGP 641

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E++        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 642  LQSGMVDNFIDRKHGREEVSYPDATWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 701

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 702  GGADMLRRAMGKKKPEEMAKQRTTFEEGAVNNGVDGELAMKIFDLVEKFAGYGFNKSHSA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT ++K HYP EF+AA MT +MDN +KI     +  +  I ++PP VN     
Sbjct: 762  AYALVSYQTLYLKAHYPAEFMAAVMTADMDNTDKIIGLVDECLRMKIPLLPPDVNKGLYR 821

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y + A+KGVG     +++EA      F  L DFC+R+D+KK+N+RVLE L
Sbjct: 822  FNVDEQGAIVYGIGAVKGVGEGPIENLIEAREKGGHFKDLFDFCARIDTKKVNKRVLEKL 881

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA+D  G +R  ++ +L++  K A    +       ++F        + +       
Sbjct: 882  IKSGAMDRLGPNRATMMATLNDAIKAAGQHHQAEAFGQADMFGVLTAAPEEVEQAYANIP 941

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 +  E E+  LG Y +GHP++ Y   L+       +++  T R     +A +V++ 
Sbjct: 942  EWPDKIWLEGERETLGLYLTGHPINAYISELKHYTTWRLKDANPTGRDKVASVAGLVIAA 1001

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1002 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1029


>gi|254785234|ref|YP_003072662.1| DNA polymerase III subunit alpha [Teredinibacter turnerae T7901]
 gi|237687442|gb|ACR14706.1| DNA polymerase III, alpha subunit [Teredinibacter turnerae T7901]
          Length = 1171

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/1047 (38%), Positives = 581/1047 (55%), Gaps = 38/1047 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+V + +SL++  + +  +L ++ A+  PA  ITD +N F  L+F + A  +GI+PI
Sbjct: 3    FVHLKVRTEFSLVDSIIRVKPLLQRVQAEAMPACGITDLHNFFGLLKFYRAAQGSGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G    I         ++        P I L      GY+ +  L+SR +   Q      
Sbjct: 63   CGADFRI---------HKAGDDDLHPPLITLYAMNLAGYKNITALISRSFQEGQSMGEPY 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I  SWL E  +EG+I L+G   G I +    N    AE++L     ++ DR Y+ LQR  
Sbjct: 114  IDESWL-EPHSEGVIALSGAKFGEIGQLLVTNKLDEAEEKLQQMMGIYRDRFYLELQRTG 172

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
               D     + V LA   + P+VATN+  FL  + +E H+  + +     +    R  R 
Sbjct: 173  RENDELHLHRAVGLAAKLDCPVVATNDVRFLDSDQFEVHEARVCIGEGRTLDDPRRERRY 232

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            + + Y ++ +EM  +F+D+PEA+ENTVEIARRC+  + +    LP +   E     +  E
Sbjct: 233  SDEQYFRSTAEMCELFADIPEAIENTVEIARRCNLDILLGKYFLPEYPIPEGLTENEFFE 292

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
               R      LE  L   A       + Y +RL FEL++I +M F GYFLIV DFIQWAK
Sbjct: 293  KICREGLDLRLERILDTSAPDYLERRKVYDERLKFELDIIIQMGFPGYFLIVMDFIQWAK 352

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             + IPVGPGRGSGAGS+ AY L ITD+DPL++ LLFERFLNP+R+SMPDFD+DFC + RD
Sbjct: 353  DHKIPVGPGRGSGAGSLVAYVLKITDLDPLQYDLLFERFLNPERVSMPDFDVDFCMEDRD 412

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            +VI YV + YG + V+QIITFG++ AKA +RDV R     Y   D+L K+IP D    ++
Sbjct: 413  KVIGYVADNYGRDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPPDVGMTLT 472

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A   +   RE    D     + +++ +LEG+ R+   HA G+VI    L    P+Y D
Sbjct: 473  -KAYEQEEILREFLQNDGDGQEIWDMALQLEGVTRNVGKHAGGVVIAPTKLIDFAPLYCD 531

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPF 603
                  VTQF+   +E AGL+KFDFLGL+TLT++  ++  + Q+        +D+S IP 
Sbjct: 532  DTGGGLVTQFDKNDVEDAGLVKFDFLGLRTLTIIDWAVTMIDQQRTRLGEPPLDISAIPL 591

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--- 660
            DD  T+ +L    T  +FQLES GM+  ++ +QPD +ED+IALV+L+RPGP+ + +V   
Sbjct: 592  DDPTTFDMLKKAETTAVFQLESRGMKDLIKRLQPDNLEDMIALVALFRPGPLQSGMVDDF 651

Query: 661  ----YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
                +   +         H  + P+L+ T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRA
Sbjct: 652  INRKHGRAQVAYPDAKYQHTSLQPILEPTYGVIVYQEQVMQIAQVLAGYTLGGADLLRRA 711

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  EEM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT
Sbjct: 712  MGKKKPEEMAKQRSIFADGAKGLGIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 771

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-I 835
            AW+K HYP  F+AA+M+ +MD  +K+  F ++ R   + ++PP VN     F V ++  I
Sbjct: 772  AWLKAHYPAHFMAATMSSDMDKTDKVVTFIEECRTMKLNLLPPDVNRGEFQFTVDEDANI 831

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             Y L AIKG+G      I+EA    PF  L DFC+RVD ++LN+R LE+LV +GALD  G
Sbjct: 832  IYGLGAIKGLGEGPVESILEARKTGPFKDLFDFCARVDGRRLNKRALEALVRSGALDNLG 891

Query: 896  Y------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK----FSV 945
                    R  +  ++    K A+    N      ++F        D+ ++ +       
Sbjct: 892  PGKDIDYDRAVMHIAIAEAVKAAEQKSANANAGISDLFGEVVPVSEDRQSVYQDFHRVRR 951

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             +   R   E+  LG Y +GHP+D Y   L            A        +A +VV+ +
Sbjct: 952  WSMKERLNGEKETLGLYLTGHPIDEYDKELSNFVSSRIFHLKAEKNKQ--TVAGLVVAFR 1009

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              KT++G  + +VT  +     E   F
Sbjct: 1010 VMKTKRGDNMAFVTLDDRTGRIEVAVF 1036


>gi|108803937|ref|YP_643874.1| DNA polymerase III catalytic subunit, DnaE type [Rubrobacter
            xylanophilus DSM 9941]
 gi|108765180|gb|ABG04062.1| DNA polymerase III catalytic subunit, DnaE type [Rubrobacter
            xylanophilus DSM 9941]
          Length = 1165

 Score =  770 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1052 (33%), Positives = 551/1052 (52%), Gaps = 41/1052 (3%)

Query: 5    LEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +  +   F HL  HS YS+L+GA  + +++     +  P IA+TD  N++ A+ F Q+A 
Sbjct: 1    MAGTSGEFAHLHCHSEYSMLDGASRIRDLVAFAREEGMPGIALTDHGNMYGAVRFYQEAT 60

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AGI+P++GC++ +        T            + LL  T EGY+ L++L +  +L  
Sbjct: 61   KAGIKPVMGCEVYVT----EWGTPMSDRSRSRYYHLTLLARTPEGYKNLMKLSTAGFLHG 116

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  R+    L+  G  G+I L+G  S  +           A + LL + ++F D +Y
Sbjct: 117  -FYYKPRVDARTLRRHGR-GIICLSGCLSAEVPARILEGRLDRARELLLEYAEIF-DAVY 173

Query: 184  VNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H   ++ R ++ +++L     LPLVATN+S + +  D   HDVL+ +      + 
Sbjct: 174  LEMQDHGLEEQRRVNRGLLRLHRETGLPLVATNDSHYTARSDARMHDVLLCIGTGKFYND 233

Query: 243  KDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             +R R   + +      EM  +F+D PEA    +E        ++     L +       
Sbjct: 234  PNRMRFHGEEFYVKPVEEMARLFADHPEA----LENTAGVVRSVEGPGIELGKTRLPNFP 289

Query: 302  -DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                      LR     GL  R  +          + R+RLDFEL  IARM F  YFLIV
Sbjct: 290  KPEGYTGSQYLRELCERGLRKRYGR-----RASDPEVRRRLDFELETIARMGFEDYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DF+++AK   I VGPGRGS AGS+ AYAL ITD+DPL++SLLFERFLNPDR+SMPD DI
Sbjct: 345  WDFVKYAKDRGIAVGPGRGSAAGSIVAYALEITDLDPLQYSLLFERFLNPDRISMPDVDI 404

Query: 421  DFCQDRRDEVIRYVQNKYG-HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            DF    R EV+RYV  KYG HE VAQIITFG++ AKAA+RD  R  Q PY++ D+L KLI
Sbjct: 405  DFSVAGRSEVMRYVTEKYGGHEHVAQIITFGTIGAKAAIRDAARIFQYPYAETDKLAKLI 464

Query: 480  PNDPAHPVSLQAIADDS---------------RFREARLADPSVDRLLEISQKLEGLYRH 524
            P  P        +                           D +  R+L+ + ++EG  RH
Sbjct: 465  PEKPVGTTLKDVLRRTGDGRYEPTEKHPGAAREILRFVERDEAAKRVLDTAFEIEGYARH 524

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT-QFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
            A THAAG+VI + PL+ +VP+ R  + +  V  Q  M  +E  GL+K DFLGL+ L +++
Sbjct: 525  AGTHAAGVVISEEPLTDIVPLQRVAKDESSVMVQHPMSDVEALGLLKVDFLGLRNLDVIE 584

Query: 584  KSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            ++L  + +    ++++  IP DD ET  L     T G+FQ ESSGM++ L+ ++PD  +D
Sbjct: 585  ETLRIVRETTGERINIREIPLDDEETLKLFARGDTFGVFQFESSGMQRMLQEVRPDRFDD 644

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            ++AL +LYRPGP+D I  +   K+  E +    P + P+L+ T GV  YQEQ+M+I+++L
Sbjct: 645  LVALNALYRPGPMDYIPNFKKGKHDPESVRYPDPRLKPILEPTYGVAAYQEQLMEISKVL 704

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
             G++  EAD LR+A+GKK K+ +   +++F+ G  +NG+   +A  ++E + K   Y FN
Sbjct: 705  GGFTPGEADTLRKAIGKKKKDILATLRDKFMRGCEENGVEPGVARELWEWMEKAGGYSFN 764

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            KSH+A Y+ +++QTA++K HYP  ++AA ++  M+  +++ ++  +AR   I+++PP VN
Sbjct: 765  KSHSACYSFLAFQTAYLKAHYPTAYMAALLSSVMNTKDRVPQYVAEARAMGIEVLPPDVN 824

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRV 881
                 F V  + I + L+A+K VG  T   I+ +  +  PF  + DFC RVD    N+R 
Sbjct: 825  ESGKRFTVVGDTIRFGLSAVKNVGDNTVEAILASREEGGPFRDIFDFCERVDPSTYNKRT 884

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LESL+  GA D  G+SR  +L       +      +  +     +F   +     +  + 
Sbjct: 885  LESLIKCGAFDRTGHSRSAMLAVHTEAVERVSRGRRASSESQFAMFDLAE-VAPPRPEVP 943

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                 +     E E+  LG + S HPL      LRK       E      G  + +A + 
Sbjct: 944  ATPD-DPRRNLEWEKETLGLFVSDHPLRPVMHKLRKHVDLSLSELDGRQDGAVVCVAGLA 1002

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             S +   TRKG  +  +   +     E   FP
Sbjct: 1003 TSVRVSTTRKGETMAVLQLDDTRGMAEVLVFP 1034


>gi|54310069|ref|YP_131089.1| DNA polymerase III subunit alpha [Photobacterium profundum SS9]
 gi|46914508|emb|CAG21287.1| putative DNA polymerase III, alpha subunit [Photobacterium profundum
            SS9]
          Length = 1158

 Score =  770 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1048 (38%), Positives = 615/1048 (58%), Gaps = 39/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL +HS +S+++G   ++ ++ K+A    PA+A+TD  NL   ++F   A  
Sbjct: 1    MAD-PRFIHLHIHSDFSMVDGLSKVSPLVKKVAEIGMPAMALTDFTNLCGLVKFYFAAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG    +  ++              +  + +L +  +GYQ L  L+S+ YL   
Sbjct: 60   AGMKPIIGADFKVHSEE----------LENELADLTILATDNDGYQNLTMLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I   WL + G +GLI+L+G   G + +A    +  +  + L  +K  F D  Y+
Sbjct: 110  VQHQPVIDKEWLVQYG-KGLILLSG-RCGDVGKALLKGNQLLVNRCLEFYKTHFEDSFYL 167

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA   +LP+VATN+  FLS E ++AH++ +++     +   
Sbjct: 168  ELVRTGRPDEDAYIHFAVELAANEDLPVVATNDVRFLSAEQFDAHEIRVSIHDGYTIVDP 227

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +RP+  +P  YL+   EM  +FSD+PEAL N+VEIA+RC+  +++       +       
Sbjct: 228  NRPKLYSPQQYLRTEEEMCELFSDIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPT 282

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA     +        +Y +RL+ EL VI +M F GYFLI
Sbjct: 283  GDLSTEDFLVVKSREGLERRLAYLFPDEAVRVEKRPEYDERLEIELKVINQMGFPGYFLI 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL+F LLFERFLNP+R+SMPDFD
Sbjct: 343  VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALDITDLDPLKFDLLFERFLNPERVSMPDFD 402

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC D+RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDRL K+I
Sbjct: 403  IDFCMDKRDLVIDHVAEIYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRLSKMI 462

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   + +  +A  AD  V  L+++ + LEG+ R+A  HA G+VI    +
Sbjct: 463  PAEPGMTL-AKAFEAEPQLGDAYNADEEVKALIDMCRILEGVTRNAGKHAGGVVISPTTI 521

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 522  TDFSPLYCDAEGANPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALALINPRREAEGKE 581

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             ++++ IP DD +++ +L    +  +FQLES GM+  ++ +QPD  ED+IALV+L+RPGP
Sbjct: 582  PINIASIPMDDKKSFAMLQRSESTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGP 641

Query: 655  IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V  + +RK+G+E++        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 642  LQSGMVDNFIDRKHGREEVSYPDATWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTL 701

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 702  GGADMLRRAMGKKKPEEMAKQRTTFEQGAVNNGVDGELAMKIFDLVEKFAGYGFNKSHSA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT ++K HYP EF+AA MT +MDN +KI     +  +  I ++PP VN     
Sbjct: 762  AYALVSYQTLYLKAHYPAEFMAAVMTADMDNTDKIIGLVDECLRMKIPLLPPDVNKGLYR 821

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y + A+KGVG     +++EA      F  L DFC+R+D+KK+N+RVLE L
Sbjct: 822  FNVDEQGAIVYGIGAVKGVGEGPIENLIEAREKGGHFKDLFDFCARIDTKKVNKRVLEKL 881

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA+D  G +R  L+ +L++  K A            ++F        + +       
Sbjct: 882  IKSGAMDRLGPNRATLMATLNDAIKAAGQHHHAEAFGQADMFGVLTAAPEEVEQAYANIP 941

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 +  E E+  LG Y +GHP++ Y   L+       +++  T R     +A +V++ 
Sbjct: 942  EWPDKIWLEGERETLGLYLTGHPINAYISELKHYTTWRLKDANPTGRDKVASVAGLVIAA 1001

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++G+RIG +T  + +   E   F
Sbjct: 1002 RVMTTKRGTRIGLMTLDDRSGRMEVMLF 1029


>gi|312173372|emb|CBX81626.1| DNA polymerase III alpha subunit [Erwinia amylovora ATCC BAA-2158]
          Length = 1160

 Score =  770 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1049 (39%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL+VHS YS+++G    + ++   A+   PAI ITD  NL   ++F   A  
Sbjct: 1    MAE-PRFIHLRVHSDYSMIDGLAKTSPLVKYAASMGMPAIGITDFTNLCGLVKFYGTAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG   ++            +     +  I +L +  EGYQ L  L+SR Y    
Sbjct: 60   QGMKPIIGADFNVS----------SEAMGDELTQITVLAADNEGYQNLTLLISRAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E   +GLI+L+GG  G + +     +     + L  +++ F DR Y+
Sbjct: 110  GPAGPTIDRDWLAE-HQQGLILLSGGRRGDVGKMLLRGNHTQVRECLSFYQQHFPDRYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    +P+VATN   FL+E D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEEAYLHAAVELAVAQGVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  YL++  EM  +FSD+PEALEN+VEIARRC+  +++       +   +   
Sbjct: 229  KRPRHYSPQQYLRSEEEMCELFSDIPEALENSVEIARRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L  ++  GLE RL      +   A+   DY QRLD ELNVI +M F GYFLI
Sbjct: 284  GEMTTEDFLVVESKKGLEERLEFLFPDEKVRAERRADYDQRLDIELNVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDLVIEHVAEMYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D   D PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  +       
Sbjct: 523  TDFSPLYCDENGDHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINAKRAKSGEA 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     I   H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM +Q+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKNPVEMARQRGGFEDGAKARGIDGELAIKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECLRMGLKVLPPDINSGLYQ 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I+EA  +   F  L D C+R D+KK+NRR+LE L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ +L +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMSALPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYSDVK 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 ++ + E+  LG Y +GHP++ Y   + +  G +  ++   T RG     A +VV+
Sbjct: 943  PWPEQIQLDGERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|126737384|ref|ZP_01753119.1| DNA polymerase III subunit alpha [Roseobacter sp. SK209-2-6]
 gi|126721969|gb|EBA18672.1| DNA polymerase III subunit alpha [Roseobacter sp. SK209-2-6]
          Length = 1170

 Score =  770 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 497/1061 (46%), Positives = 685/1061 (64%), Gaps = 51/1061 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+ H+ YSLLEGAL L  + D     + PAIA+TD+NNLFSALEFS  A  
Sbjct: 1    MTNTPRFIHLRTHTEYSLLEGALRLKKLPDLCKKHEMPAIAVTDSNNLFSALEFSVSASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPIIGCQ+D+           G+ P P  P +VLL     GY+ L++L S +YL  Q
Sbjct: 61   AGVQPIIGCQVDL----RYFEPAPGERPKPPAP-LVLLAQNEAGYEHLMKLNSCLYLR-Q 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G +   + L  L E+  + +I L+GG  GP+ R         AE+ +   K +F DRLYV
Sbjct: 115  GGELPHVTLEELAELAGD-VICLSGGPDGPVGRLLQQGQRPAAEELMQRLKAIFPDRLYV 173

Query: 185  NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       ++  E   V++AY  +LPLVATN+  F + E YEAHD ++ +A   
Sbjct: 174  ELQRHPGEQGQPEAEKLSERGHVEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAEGA 233

Query: 239  VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+T  HY K++ EMV++F+DLPEA+ENTVEIA+RC+F+            +
Sbjct: 234  YVDQAEPRRRLTAQHYFKSQEEMVALFADLPEAIENTVEIAKRCAFMAY--------RRD 285

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    +E  ELR  A  GL+ RLA   I      ++Y++RLDFEL +I  M F GYF
Sbjct: 286  PILPKFADDEVAELRRIANEGLQQRLA--VIPHAVSVEEYQERLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S+   + ++ R RE    +  VDRLL+   ++EGL R A THAAG+VIGD
Sbjct: 464  LIPVEGVKPMSIVDSLKEEPRLREEAENEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL  LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q G  +
Sbjct: 524  RPLDALVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDL 583

Query: 597  D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                               ++ IP DD  TY L +   T+ +FQ+ES+GM  AL+ M+P+
Sbjct: 584  HVAEDGSQLYEPPEGAANQINAIPLDDAVTYKLYSAAKTVAVFQVESTGMMDALKRMKPN 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG ++I S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPTYCEVKNGLKQITSVHPLIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++ Y+L  AD+LRRAMGKKIKE MD ++ +F  GA++NG+ K  A  +F+LL KFA+
Sbjct: 704  AQVMANYTLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVDKKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQT W+K ++PVEF+A  M  ++   EK+  + ++ ++   +  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTEKLAIYFEEVKKGLGLPYV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS----ADKPFDSLEDFCSRVD 873
            PP VN     F V +  + Y+L A+K VG    R + EA      ++PF S+ DF  RV+
Sbjct: 824  PPCVNRSEATFNVVNGELVYALGALKNVGVDVMRLVAEARREDGQERPFVSIFDFARRVN 883

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             KK+ +R LE +  AGA D    +R ++ +SL+ +  Y+  V   + +   ++F  E G 
Sbjct: 884  LKKVGKRPLEMMTRAGAFDQLDRNRRRVFESLEALVNYSAAVHDQKNSNQVSLFG-EAGD 942

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
               +  L        + R   E + +GFY SGHPLD Y P L++  +   +E +A     
Sbjct: 943  DLPEPRLAGTPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVMAKAERG 1002

Query: 994  N--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                ++A +V  +Q++K+++G+R  +   S+    YE   F
Sbjct: 1003 PFMAKMAGVVAGRQERKSQRGNRFAFAQLSDTTGAYEVTIF 1043


>gi|212212283|ref|YP_002303219.1| DNA polymerase III alpha subunit [Coxiella burnetii CbuG_Q212]
 gi|212010693|gb|ACJ18074.1| DNA polymerase III alpha subunit [Coxiella burnetii CbuG_Q212]
          Length = 1143

 Score =  770 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1034 (40%), Positives = 619/1034 (59%), Gaps = 33/1034 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++HS YS+++  + ++ +L +    + PA+A+TD  NLF+ ++F ++A   GI+P
Sbjct: 4    SFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +   D++                  L     G++ LI+L+SR Y+  + +  V
Sbjct: 64   IIGSELLLAEGDDV-------------FRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHV 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL +   EGLI+L+G   G + +A     S +AE+RL  +   F  R Y+ LQR 
Sbjct: 111  LIQWEWLVQ-ANEGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRT 169

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R  +      V++LA  H +P+VATN   FLS+ D+EAH+  + +    ++   +RPR 
Sbjct: 170  RRDQEEEYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPRE 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   Y K+  EM ++FSD+PEALENTVEIA+RCS  L +    LP+F          + 
Sbjct: 230  YSDQQYFKSAEEMTALFSDIPEALENTVEIAKRCSVPLSLGEVFLPKFPVP----ANLKV 285

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+  R +A  GL  RL    +      +DY +RL+ E+ VI +M F+ YFLIVADFI WA
Sbjct: 286  EDYFRAQAKQGLTRRLVGLEMKNNLTHKDYEERLETEITVITKMGFASYFLIVADFIAWA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+++IPVGPGRGSGAGS+ AY+L IT++DPL   LLFERFLN +R+SMPDFDIDFC + R
Sbjct: 346  KQHHIPVGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEGR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI YV  +YG E VAQIIT+G++ A+A LRDVGR L +PY  VD++ KL+P +    +
Sbjct: 406  DRVIDYVAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELGVTL 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +    +    D  V  L++++ KLEGL R+A  HA G+VI    L+  VP+Y 
Sbjct: 466  E-KALEQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPLYS 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVKVDLSLIP 602
            +  SD  VTQF+   +E  GL+KFDFLGL+TLT++  ++  +      Q   ++D+  IP
Sbjct: 525  EPGSDHVVTQFDKDDVEAVGLVKFDFLGLRTLTIINWAVQNINAKRKIQNETELDIGTIP 584

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD +TY LL +  T  +FQLES GM++ +  +QPD   DI+ALV+L+RPGP+ + +V  
Sbjct: 585  LDDPKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMVET 644

Query: 663  NRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
                   +  +  +HP ++P+L+ T GVI+YQEQVMQIAQ+L+GYSL  ADVLR AMGKK
Sbjct: 645  FIACKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMGKK 704

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              EEM KQ+  F+ G    G+ + +A  IF+L+ KF+ YGFNKSH+AAYA+I+YQTAW+K
Sbjct: 705  KPEEMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAWLK 764

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSL 839
             HYP EF+AA ++ +MDN +K+  F  + R  N++++PP++N     F V    +I Y L
Sbjct: 765  AHYPAEFMAAVLSSDMDNTDKVVGFINECRDMNLELLPPNINWSHYPFTVNTKGQIVYGL 824

Query: 840  AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIKGVG     +I+    A+  F  L +FCSRVD +K+NRR +E L+ +GA+D FG SR
Sbjct: 825  GAIKGVGEAAVMNIVACREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFGVSR 884

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              L +SL    + A+   ++      ++F  E     +     +    N S R   E+  
Sbjct: 885  ASLFESLTKAFQAAEQRNRDMILGQHDLFGEEVKGIDED--YTEVPEWNDSDRLRGEKET 942

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG Y SGHPL      ++ +G        +    N++ +A M++  +   TR G R+  +
Sbjct: 943  LGLYVSGHPLQACIKEMKAVGAVPINHL-SLSEKNSVVVAGMMMGMRTITTRSGKRMAIL 1001

Query: 1019 TFSEPAKEYEANFF 1032
            +  +   + +   F
Sbjct: 1002 SLEDQTGKIDVTLF 1015


>gi|29654634|ref|NP_820326.1| DNA polymerase III alpha subunit [Coxiella burnetii RSA 493]
 gi|29541902|gb|AAO90840.1| DNA polymerase III alpha subunit [Coxiella burnetii RSA 493]
          Length = 1143

 Score =  770 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1034 (40%), Positives = 620/1034 (59%), Gaps = 33/1034 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++HS YS+++  + ++ +L +    + PA+A+TD  NLF+ ++F ++A   GI+P
Sbjct: 4    SFVHLKIHSEYSIVDSVVRIDQLLQRAVDLKMPAVALTDEVNLFALVKFYRQAINKGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +   D++                  L     G++ LI+L+SR Y+  + +  V
Sbjct: 64   IIGSELLLAEGDDV-------------FRFTALCQNQIGFRHLIQLLSRAYVEGRQRDHV 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL +   EGLI+L+G   G + +A     S +AE+RL  +   F  R Y+ LQR 
Sbjct: 111  LIQWEWLVQ-ANEGLIILSGARRGNVGQALLQRRSPLAEERLTRWINHFPGRFYLELQRT 169

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R  +      V++LA  H +P+VATN   FLS+ D+EAH+  + +    ++   +RPR 
Sbjct: 170  RRDQEEEYIHSVIELALKHRVPVVATNEVCFLSQGDFEAHEARVCIHQGYLLQDVNRPRE 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   Y K+  EM ++FSD+PEALENTVEIA+RCS  L +    LP+F          + 
Sbjct: 230  YSDQQYFKSAEEMTALFSDIPEALENTVEIAKRCSVPLSLDEVFLPKFPVP----ANLKV 285

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+  R +A  GL  RL    +      +DY +RL+ E+ VI +M F+ YFLIVADFI WA
Sbjct: 286  EDYFRAQAKQGLTRRLVGLEMKNNLTHKDYEERLETEITVITKMGFASYFLIVADFIAWA 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+++IPVGPGRGSGAGS+ AY+L IT++DPL   LLFERFLN +R+SMPDFDIDFC + R
Sbjct: 346  KQHHIPVGPGRGSGAGSLVAYSLGITELDPLEHDLLFERFLNLERVSMPDFDIDFCMEGR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI YV  +YG E VAQIIT+G++ A+A LRDVGR L +PY  VD++ KL+P +    +
Sbjct: 406  DRVIDYVAERYGQEAVAQIITYGTMAARAVLRDVGRVLGLPYGYVDKIAKLVPFELGVTL 465

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+  +    +    D  V  L++++ KLEGL R+A  HA G+VI    L+  VP+Y 
Sbjct: 466  E-KALEQEEILAKRYAEDEEVKNLIDLAMKLEGLTRNAGKHAGGVVIAPTKLTDFVPLYS 524

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVKVDLSLIP 602
            +  SD  VTQF+   +E  GL+KFDFLGL+TLT++  ++  +      Q   ++D+  IP
Sbjct: 525  EPGSDHVVTQFDKDDVEAVGLVKFDFLGLRTLTIINWAVQNINAKRKIQNETELDIGTIP 584

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD +TY LL +  T  +FQLES GM++ +  +QPD   DI+ALV+L+RPGP+ + +V  
Sbjct: 585  LDDPKTYALLKSCATTAVFQLESRGMKELIRRLQPDNFADIMALVALFRPGPLQSGMVET 644

Query: 663  NRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
                   +  +  +HP ++P+L+ T GVI+YQEQVMQIAQ+L+GYSL  ADVLR AMGKK
Sbjct: 645  FIACKHGEQSVHFLHPALEPILRTTYGVILYQEQVMQIAQVLAGYSLGAADVLRHAMGKK 704

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              EEM KQ+  F+ G    G+ + +A  IF+L+ KF+ YGFNKSH+AAYA+I+YQTAW+K
Sbjct: 705  KPEEMAKQRAVFLEGTKARGLKEALANQIFDLMEKFSGYGFNKSHSAAYALIAYQTAWLK 764

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSL 839
             HYP EF+AA ++ +MDN +K+  F  + R  N++++PP++N     F V    +I Y L
Sbjct: 765  AHYPAEFMAAVLSSDMDNTDKVVGFINECRDMNLELLPPNINWSHYPFTVNTKGQIVYGL 824

Query: 840  AAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIKGVG   A +I+    A+  F  L +FCSRVD +K+NRR +E L+ +GA+D FG SR
Sbjct: 825  GAIKGVGEAAAMNIVAYREAEGEFKGLFNFCSRVDLRKVNRRAVEPLIRSGAMDTFGVSR 884

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              L +SL    + A+   ++      ++F  E     +     +    N S R   E+  
Sbjct: 885  ASLFESLTKAFQAAEQRNRDMILGQHDLFGEEVKGIDED--YTEVPEWNDSDRLRGEKET 942

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG Y SGHPL      ++ +G        +    N++ +A M++  +   TR G R+  +
Sbjct: 943  LGLYVSGHPLQACIKEMKAVGAVPINHL-SLSEKNSVVVAGMMMGMRTITTRSGKRMAIL 1001

Query: 1019 TFSEPAKEYEANFF 1032
            +  +   + +   F
Sbjct: 1002 SLEDQTGKIDVTLF 1015


>gi|325278077|ref|ZP_08143596.1| DNA polymerase III subunit alpha [Pseudomonas sp. TJI-51]
 gi|324096784|gb|EGB95111.1| DNA polymerase III subunit alpha [Pseudomonas sp. TJI-51]
          Length = 1174

 Score =  770 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1060 (38%), Positives = 590/1060 (55%), Gaps = 56/1060 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS +SL++G + +  +   +A    PA+AITD +N+ S ++F + A  AGI+PI
Sbjct: 5    FVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L +           G  P   +  I LL    +GY+ L EL+SR +   Q    V 
Sbjct: 65   CGADLWLA----------GADPEAPLSRICLLAMNPKGYRNLTELISRGWTDGQRNGLVI 114

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
            +   W+    +EGLI L+ G  G I  A        A+  L  +  +F +R YV +QR +
Sbjct: 115  LQREWIA-PASEGLIALSAGKEGDIGMALLAGRDDEAQALLQDWMGMFPERFYVEVQRTN 173

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
            R  D       V LA     PLVATN+  F+ + D++AH+  + +     +    RPR  
Sbjct: 174  RARDEEYVHAAVALADRLGAPLVATNDVRFIKQSDFDAHETRVCIGEGWTLDDPRRPRCY 233

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   YLK+  EM  +FSDLP+A+ NTVEIA+RC+  +Q+    LP F       I    +
Sbjct: 234  SDQQYLKSSEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI----D 289

Query: 309  NELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            + LR+ +  GLE         +         Q Y  RL FEL++I +M F GYFLIV DF
Sbjct: 290  DYLRHVSHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDF 349

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 350  IKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFC 409

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D RD VI YV   YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP + 
Sbjct: 410  MDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 469

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +   R+    D     + +++ KLEG+ R    HA G+VI    L+   
Sbjct: 470  GMTLE-KAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFS 528

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598
            P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ +      +    V++
Sbjct: 529  PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDVNI 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD +TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + 
Sbjct: 589  DFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 648

Query: 659  VVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V +                   +  + P+L  T G+I+YQEQVMQIAQ+++GY+L  AD
Sbjct: 649  MVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGAD 708

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY +
Sbjct: 709  MLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 768

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VN     F V 
Sbjct: 769  VSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVN 828

Query: 832  -DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D RI Y L AIKGVG      I+EA A   PF  L DFC R+D K++N+R L++LV +G
Sbjct: 829  DDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSG 888

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKG 932
            ALD  G                +R  LL +L    K A+       + H ++F    +  
Sbjct: 889  ALDRLGPHFHDEIKAYHAHIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGGMFDAA 948

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                     K        R + E+  LG Y +GHP+D Y+  +R+   +   +   +   
Sbjct: 949  DVDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIIDLKPSRET 1008

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A M+++ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1009 Q--TIAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046


>gi|304406873|ref|ZP_07388528.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus YK9]
 gi|304344406|gb|EFM10245.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus YK9]
          Length = 1087

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/1033 (38%), Positives = 596/1033 (57%), Gaps = 26/1033 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS YSLL+GA  + ++  + A     A+A+TD   ++ A+ F +     GI+P
Sbjct: 10   RFVHLHVHSEYSLLDGAARVRDLAARAAELGMDALALTDHGVMYGAIPFYKACKENGIRP 69

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +          + + P   +  ++LL     GY+ L++LV+   L +      
Sbjct: 70   IIGCEVYMTAGSRFDKGTRKENP---IYHLILLAKNETGYRNLMKLVTIGQL-EGLHYRP 125

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI +  L     EG+I L+    G + +       + A+   L +K +FGD  Y+ LQ H
Sbjct: 126  RIDMESLAA-HAEGIICLSSCLGGEVPQHLLHGRPEEAKAAALRYKAIFGDDYYIELQDH 184

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++     +++ LA    + L ATN++ +L  ED    DVL+ +     V  +DR ++
Sbjct: 185  GIIEQKKVMPELIALAREIGVKLAATNDAHYLQPEDATMQDVLICIGTGKTVEDEDRFKI 244

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+  EM ++F  +PEA+ NT EIA +C   L +    LP F            
Sbjct: 245  ASDQLYLKSGEEMAALFRHVPEAIANTAEIADKCRLELSLGRAALPTF---RPVPEGMSS 301

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + L      GL  R A      G      ++RLD+EL VI RM +S YFLIV DFI++A
Sbjct: 302  ADFLAELCRDGLASRYA------GAPEPAAQERLDYELAVIERMGYSDYFLIVWDFIRFA 355

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +  I  GPGRGS AGS+ AY L ITD+DPL+  LLFERFLNP+R+SMPD DIDF  +RR
Sbjct: 356  HERGIRTGPGRGSSAGSLVAYTLNITDVDPLKHKLLFERFLNPERVSMPDIDIDFNDERR 415

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI YV  KYG E VAQIITFG++ A+AA+RDVGRA+ +P+ +VDR  KLIPN     +
Sbjct: 416  DEVIAYVSAKYGEEHVAQIITFGTMAARAAVRDVGRAMNVPFGEVDRAAKLIPNQLGITL 475

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+      REA    P  + LL+++ K+EG+ RHASTHAAG+VI   PL+  VP+  
Sbjct: 476  E-EALRISPELREASAKQPRTEALLKMAMKVEGMPRHASTHAAGVVISQEPLTHYVPLQ- 533

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                   +TQ++M+ +E  GL+K DFLGL+TL++++++L ++ +  G  +D   I  DD 
Sbjct: 534  AGTDRTALTQYSMENLEAVGLLKMDFLGLRTLSIVERTLRWVKELYGRDIDFRTIADDDP 593

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             TY +L    T GIFQLES+G+R+ L+ M+P   EDI+++++LYRPGP++ I  Y   K+
Sbjct: 594  LTYEMLGRGETTGIFQLESTGVRRVLKEMKPSVFEDIVSVLALYRPGPMEFIPKYIQGKH 653

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+ ++   HP ++P+L +T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E +D
Sbjct: 654  GQVEVEYPHPSLEPILSDTYGIIVYQEQIMQIASAMAGFSLGEADLLRRAVSKKKREVLD 713

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +++  F+ G+ K G ++  A  +++++ +FADYGF ++HAAAY V+++QTA++K HYPV 
Sbjct: 714  EERAHFVGGSLKQGYAEADANLVYDMIVRFADYGFPRAHAAAYGVLAFQTAYLKAHYPVP 773

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRIYYSLA 840
            F+A+ +     N  K  ++    R+  + ++PP VN   V F            I + LA
Sbjct: 774  FMASMLASVTGNQRKTAEYVDACRRMGMDVLPPDVNESGVTFTPVHRAGEARGAIRFGLA 833

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            A+K VGT     IM+  A++P+DSL D C RVD + +N+RV+ESLV +GA D     R Q
Sbjct: 834  AVKNVGTQAIESIMKERAERPYDSLTDMCRRVDLRVVNKRVMESLVQSGATDSLPGHRSQ 893

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            LL +LD I   A    K+R     N+F  ++   + ++ L      ++  + E E+ +LG
Sbjct: 894  LLGALDEIVDAAAKWRKDREELQINLFGFDE-VINWEVELPDVRPFSTGQKLELERELLG 952

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             Y SGHP+D  +  L   GI    +      G       MVVS +   TRKG  + ++  
Sbjct: 953  LYLSGHPIDAVEEALSPHGIDRLVDLAEAEDGTLAVFPIMVVSVKPMMTRKGQAMAFLEV 1012

Query: 1021 SEPAKEYEANFFP 1033
             +     EA  FP
Sbjct: 1013 EDRIMRVEAVAFP 1025


>gi|78212689|ref|YP_381468.1| DNA polymerase III subunit alpha [Synechococcus sp. CC9605]
 gi|78197148|gb|ABB34913.1| DNA polymerase III, alpha subunit [Synechococcus sp. CC9605]
          Length = 1172

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1049 (36%), Positives = 583/1049 (55%), Gaps = 33/1049 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++      PAIA+TD   ++ A+E  +      ++P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPAMVEEAKQLGMPAIALTDHGVMYGAIELLKLCQGTDLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          +          +V+L   A GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPQPK----KEKRYHLVVLAKNATGYRNLVKLTSISHLRGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L++  +EGLI+ T    G I +A       VA K    ++++FGD  Y+ 
Sbjct: 118  FSRACIDKELLKQ-HSEGLIIATACLGGEIAQAILRGRPDVARKVAAWYQEVFGDDYYLE 176

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V++A    + +VATN++ +LS++D EAHD L+ V    +++ + 
Sbjct: 177  IQDHGSPEDRIVNVEIVKIAKELGIQIVATNDAHYLSKQDVEAHDALLCVLTGKLITDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R R T   Y+K   EM  +F D   PE ++  +    + +  ++ +  +    + +    
Sbjct: 237  RLRYTGTEYIKTEEEMGLLFGDHLEPEVVQEAIANTVKVAEKVEPYDILGRYQMPRFPIP 296

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                  + LR     GL  RL      +     DY +R+  EL ++ +M F  YFL+V D
Sbjct: 297  EGHTPVSYLREVTEQGLRDRLE--LSPEASLPDDYAERMAHELKIMEQMGFPTYFLVVWD 354

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I++A++ NIPVGPGRGS AGS+ AY L IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 355  YIRFAREQNIPVGPGRGSAAGSLVAYCLGITNIDPITNCLLFERFLNPERKSMPDIDTDF 414

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KLIP  
Sbjct: 415  CIERRGEVIDYVTERYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 474

Query: 483  PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
               P  L+A+    + +  FRE   ADP+V R ++++ ++EG  +    HAAG+VI   P
Sbjct: 475  RGKPAKLKAMIGEESPNPEFREKYEADPTVKRWVDMAMRIEGTNKTFGVHAAGVVIAADP 534

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597
            L +LVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT+++K+L+ +    G +VD
Sbjct: 535  LDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIEKTLELVEVSSGTRVD 593

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               +P  D  T+ LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYRPGP+D 
Sbjct: 594  PDKLPPQDEATFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPGPLDA 653

Query: 658  --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  + NRK+G+E I   H +++P+L ET G+++YQEQ+M+IAQ L+GYSL +AD+LRR
Sbjct: 654  GLIPKFINRKHGREAIDFAHAILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQADLLRR 713

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK   EM K +  F+ GA + G+ + +A  +F+ +  FA+Y FNKSH+ AY  ++YQ
Sbjct: 714  AMGKKKVSEMQKHRGIFVQGAGERGVDEKVADELFDQMVLFAEYCFNKSHSTAYGAVTYQ 773

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYPV ++AA +T+     +K++++  +     I++MPP VN    DF    +RI
Sbjct: 774  TAYLKAHYPVAYMAALLTVNAGAADKVQRYISNCNAMGIEVMPPDVNASLTDFTPNGDRI 833

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L+A++ +G    R ++ A  +D PF SL D C R+ S  LNRR LESLV  GALD  
Sbjct: 834  LFGLSAVRNLGDGAIRQLIAARDSDGPFRSLADLCDRIPSSVLNRRGLESLVHCGALDAM 893

Query: 895  GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--------KGTFSDKITLEKFS 944
                +R QL+  LD +  +A    K+R +   N+F               S        +
Sbjct: 894  DPQANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAPAADADGPADLSHAPKAAPVT 953

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                + +   E+ ++GFY S HPL    P  + +   G            +   AMV   
Sbjct: 954  DYPPTEKLRLEKDLVGFYLSDHPLKQLTPSSKLLAPIGLGSLEEQPDKAKVSAIAMVAEM 1013

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +Q  TRKG R+  +   +     EA  FP
Sbjct: 1014 RQVTTRKGDRMAILQLEDLTGSCEAVVFP 1042


>gi|167032174|ref|YP_001667405.1| DNA polymerase III subunit alpha [Pseudomonas putida GB-1]
 gi|166858662|gb|ABY97069.1| DNA polymerase III, alpha subunit [Pseudomonas putida GB-1]
          Length = 1174

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1060 (38%), Positives = 590/1060 (55%), Gaps = 56/1060 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS +SL++G + +  +   +A    PA+AITD +N+ S ++F + A  AGI+PI
Sbjct: 5    FVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L +           G  P   +  I  L    +GY+ L EL+SR +   Q    V 
Sbjct: 65   CGADLWLA----------GADPEAPLSRICFLAMNPQGYRNLTELISRGWTDGQRNGLVI 114

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
            +   W+    +EGLI L+ G  G I  A        A+  L  +  +F +R YV +QR +
Sbjct: 115  LQREWIA-PASEGLIALSAGKEGDIGMALLNGRDDEAQALLQDWMGMFPERFYVEVQRTN 173

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  D       V LA     PLVATN+  F+ + D++AH+  + +     +    RPR  
Sbjct: 174  RARDEEYVHAAVALADKFGAPLVATNDVRFIKQSDFDAHETRVCIGEGWTLDDPRRPRGY 233

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   YLK+  EM  +FSDLP+A+ NTVEIA+RC+  +Q+    LP F       I    +
Sbjct: 234  SDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI----D 289

Query: 309  NELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            + LR+ +  GLE                   Q Y  RL FEL++I +M F GYFLIV DF
Sbjct: 290  DYLRHVSYEGLEERLAVLWPKDTTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDF 349

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 350  IKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFC 409

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D RD VI YV   YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP + 
Sbjct: 410  MDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 469

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +   R+   +D     + +++ KLEG+ R    HA G+VI    L+   
Sbjct: 470  GMTLE-KAYEQEEILRDFLKSDEDGREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFS 528

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS---- 599
            P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ + +   K +L     
Sbjct: 529  PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKNNLPDLNI 588

Query: 600  -LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD +TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + 
Sbjct: 589  DFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 648

Query: 659  VVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V +                   +  + P+L  T G+I+YQEQVMQIAQ+++GY+L  AD
Sbjct: 649  MVDDFINRKHGRAELAYPHADYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGAD 708

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY +
Sbjct: 709  MLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 768

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VN     F V 
Sbjct: 769  VSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVN 828

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D RI Y L AIKGVG      I+EA A   PF  L DFC R+D K++N+R L++LV +G
Sbjct: 829  NDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCDRIDLKRVNKRTLDALVRSG 888

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKG 932
            ALD  G                +R  LL +L    K A+       + H ++F    ++ 
Sbjct: 889  ALDRLGPHFHDEIKAYQANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDEA 948

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                     K        R + E+  LG Y +GHP+D Y+  +R+   +   +   +   
Sbjct: 949  QVDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIIDLKPSRET 1008

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A M+++ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1009 Q--TIAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046


>gi|153829941|ref|ZP_01982608.1| DNA polymerase III subunit alpha [Vibrio cholerae 623-39]
 gi|262161397|ref|ZP_06030507.1| DNA polymerase III alpha subunit [Vibrio cholerae INDRE 91/1]
 gi|148874576|gb|EDL72711.1| DNA polymerase III subunit alpha [Vibrio cholerae 623-39]
 gi|262028708|gb|EEY47362.1| DNA polymerase III alpha subunit [Vibrio cholerae INDRE 91/1]
          Length = 1143

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1031 (40%), Positives = 604/1031 (58%), Gaps = 37/1031 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G   +  ++ K+AA   PA+A+TD  NL   ++F   A   G++PIIG    +    
Sbjct: 1    MVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q +     +  + LL     GY+ L  L+S+ YL    +    I  +WL E   
Sbjct: 57   ------QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HA 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L R    D        
Sbjct: 110  EGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +E
Sbjct: 170  LDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL N+VEIA+RC+  +++                    E+ L  K+  GL
Sbjct: 230  MCELFADIPEALANSVEIAKRCNVTVRLGEYF-----LPNFPTGGMAIEDFLVMKSREGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGP
Sbjct: 285  EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V  
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P DP   +    IA + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIA-EP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
              +E   AD  V  L++  + LEG  R+A  HA G+VI    ++   P+Y D   + PVT
Sbjct: 464  ALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V +  IP DD  ++  
Sbjct: 524  QFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRN 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584  LQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             I        H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  AISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTHYP
Sbjct: 704  MAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843
             EF+AA MT +MDN EK+     + +   + ++PP +N+    F V DN  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L DFC+R+D KK+N+RV+E L+ AGALD  G  R  ++
Sbjct: 824  GVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGF 961
             S+D+  + A    +       ++F        + +    +       VR E E+  LG 
Sbjct: 884  ASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y +GHP+D Y   L K       E+  T R  ++ +A +V++ +   T++G+RIG +T  
Sbjct: 944  YLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLD 1003

Query: 1022 EPAKEYEANFF 1032
            + +   E   +
Sbjct: 1004 DRSGRMEVMLY 1014


>gi|330896075|gb|EGH28296.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. japonica
            str. M301072PT]
 gi|330975384|gb|EGH75450.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aptata
            str. DSM 50252]
          Length = 1173

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1065 (38%), Positives = 599/1065 (56%), Gaps = 57/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  
Sbjct: 1    MP--ASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PI G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q
Sbjct: 59   SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   W+ +  +EG+I L+    G I  A    +   A++ L  + ++F DR Y+
Sbjct: 109  RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYI 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +   
Sbjct: 168  EVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDP 227

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R    +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   
Sbjct: 228  RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287

Query: 303  IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            I    +   R  +  GLE R                 Q Y  RL+FEL++I +M F GYF
Sbjct: 288  I----DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 344  LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K
Sbjct: 404  FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP +    +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI   
Sbjct: 464  MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPT 522

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592
             L+   P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +      
Sbjct: 523  KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +D++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RP
Sbjct: 583  EEPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642

Query: 653  GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V +               +   +  + P+L  T G+I+YQEQVMQIAQ+++GY
Sbjct: 643  GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH
Sbjct: 703  TLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSH 762

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAY ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT  
Sbjct: 763  SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822

Query: 826  VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F V  D RI Y L AIKGVG      I +A  D PF  L DFC+RVD K++N+R L+ 
Sbjct: 823  FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQDGPFKDLFDFCARVDLKRVNKRTLDG 882

Query: 885  LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+ +GALD  G                +R  LL +L+   + A+   ++  + H ++F  
Sbjct: 883  LIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGG 942

Query: 930  E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +          K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +  
Sbjct: 943  LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|188533052|ref|YP_001906849.1| DNA polymerase III subunit alpha [Erwinia tasmaniensis Et1/99]
 gi|188028094|emb|CAO95951.1| DNA polymerase III subunit alpha [Erwinia tasmaniensis Et1/99]
          Length = 1160

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1049 (39%), Positives = 606/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL+VHS YS+++G      ++   A    PAI ITD  NL   ++F   A  
Sbjct: 1    MAE-PRFIHLRVHSDYSMIDGLAKTAPLVKYAAKMGMPAIGITDFTNLCGLVKFYGTAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG   +++           +     +  I +L +  +GYQ L  L+SR Y    
Sbjct: 60   QGMKPIIGADFNVN----------SEAMGDELTQITVLAADNQGYQNLTLLISRAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E   +GLI+L+GG  G + +     +     + L  +++ F DR Y+
Sbjct: 110  GPAGPTIDRDWLAE-HQQGLILLSGGRRGDVGKMLLRGNHVQVNECLNFYQQHFPDRYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    +P+VATN   FL+E D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEETYLHAAVELAVAQSVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  YL++  EM  +FSD+PEALEN+VEIARRC+  +++       +   +   
Sbjct: 229  KRPREYSPQQYLRSEEEMCELFSDIPEALENSVEIARRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L  K+  GLE     L      +      Y +RLD ELNVI +M F GYFLI
Sbjct: 284  GEMTTEDFLVVKSKQGLEERLTFLFPDEKIRAERRPAYDERLDIELNVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDLVIEHVAEMYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPLYCDEHGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINARRAKSGEA 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKNPEEMAKQRGGFEDGAKARGIDGELAIKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQ 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I+EA  +   F  L D C+R D+KK+NRR+LE L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ +L +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMSALPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYSDVK 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 ++ + E+  LG Y +GHP++ Y   + +  G +  ++   T RG     A +VV+
Sbjct: 943  PWPEQIQLDGERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|104783180|ref|YP_609678.1| DNA polymerase III subunit alpha [Pseudomonas entomophila L48]
 gi|95112167|emb|CAK16894.1| DNA polymerase III, alpha chain [Pseudomonas entomophila L48]
          Length = 1174

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1061 (38%), Positives = 590/1061 (55%), Gaps = 56/1061 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL+VHS +SL++G + +  +   +A    PA+AITD +N+ S ++F + A  AGI+P
Sbjct: 4    SFVHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G  L +           G      +  I  L    +GY+ L EL+SR +   Q    V
Sbjct: 64   ICGADLWLA----------GADSEAPLSRICFLAMNPKGYRNLTELISRGWTDGQRNGLV 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   W+    +EGLI L+ G  G I  A        AE  L  +  +F +R YV +QR 
Sbjct: 114  IIQRDWIA-PASEGLIALSAGKEGDIGMALMAGRQAEAEVLLGDWMGMFPERFYVEVQRT 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
            +R  D       V LA     PLVATN+  F+ + D++AH+  + +     +    RPR 
Sbjct: 173  NRAGDEEYVHAAVALADQFGAPLVATNDVRFVKQSDFDAHETRVCIGEGWTLDDPRRPRG 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YLK+  EM  +FSDLP+A+ NTVEIA+RC+  +Q+    LP F       I    
Sbjct: 233  YSDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNITVQLGKYFLPDFPTPNGMGI---- 288

Query: 308  ENELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            ++ LR+ +  GLE         +         Q Y  RL FEL++I +M F GYFLIV D
Sbjct: 289  DDYLRHVSHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 349  FIKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI YV   YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP +
Sbjct: 409  CMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A   +   R+   +D     + +++ KLEG+ R    HA G+VI    L+  
Sbjct: 469  VGMTLE-KAYEQEEILRDFLKSDEDGREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS--- 599
             P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ + +   K +L    
Sbjct: 528  SPIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQKKNNLPDVN 587

Query: 600  --LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               IP DD +TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ +
Sbjct: 588  IDFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQS 647

Query: 658  IVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V +                   +  + P+L  T G+I+YQEQVMQIAQ+++GY+L  A
Sbjct: 648  GMVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY 
Sbjct: 708  DMLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYG 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VN     F V
Sbjct: 768  LVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTV 827

Query: 831  GD-NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             D  RI Y L AIKGVG      I+EA A   PF  L DFC R+D K++N+R L++L+ +
Sbjct: 828  NDEGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALIRS 887

Query: 889  GALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEK 931
            GALD  G                +R  LL +L    K A+       + H ++F    ++
Sbjct: 888  GALDRLGPHFHDEIKAYQANIDINRATLLSALGEAVKAAEQAAHTADSGHVDLFGSMFDE 947

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                      K        R + E+  LG Y +GHP+D Y+  +R+   +   +      
Sbjct: 948  ADVDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPARD 1007

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 +A M+++ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1008 TQ--TIAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046


>gi|289523190|ref|ZP_06440044.1| DNA polymerase III, alpha subunit [Anaerobaculum hydrogeniformans
            ATCC BAA-1850]
 gi|289503733|gb|EFD24897.1| DNA polymerase III, alpha subunit [Anaerobaculum hydrogeniformans
            ATCC BAA-1850]
          Length = 1144

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1034 (37%), Positives = 605/1034 (58%), Gaps = 32/1034 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YSLL+GA+ + +++ +       A+A+TD   +F A+EF  +    G++PI
Sbjct: 10   FVHLHVHTEYSLLDGAIKIKDLVSRAKEWDMGAVAVTDHGVMFGAIEFYYECMKQGVKPI 69

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ +D + + +   QG         ++LL    EGY+ L++LVS    ++      R
Sbjct: 70   MGCEVYVDPKGHTRREGQGGN-----YHLLLLAENEEGYRNLVKLVSIAN-VEGFYYKPR 123

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
            +    L +  ++GLI  +   +G +           A+++ L ++ +FG+   Y+ +  +
Sbjct: 124  VDYDLLSKY-SKGLIASSACLAGEVPSLILSGRYDEAKEKALLYRDIFGEGNFYLEIMSN 182

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++      V++LA    +PL+ATN++ +L   D + H++L+ V  ++ V+ K+R + 
Sbjct: 183  GLSEQAVANKHVIELARKANIPLLATNDAHYLESYDADWHEILLCVQTNSTVNSKNRFQF 242

Query: 249  TPDHYLKNR--SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +              +L +AL NTV+I+ RC+  L+    +LP +   E +     
Sbjct: 243  GSKEFYLRSPVEMWKIFGDELSDALHNTVDISERCNVKLEFGQYMLPEYKVPEGE----T 298

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+ L  KA  GL  R            Q+Y +R+++EL VI +M F+GYFLIV DFI  
Sbjct: 299  LESYLALKAQEGLARRFGG-----REIPQEYIKRMEYELGVIKQMGFAGYFLIVQDFINA 353

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+  IPVGPGRGS AGS+ AYAL IT+IDP+ ++LLFERFLNP+R+SMPD D D    R
Sbjct: 354  AKERGIPVGPGRGSAAGSLVAYALRITEIDPITYNLLFERFLNPERISMPDIDTDISDKR 413

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV  KYG ++VAQIITF  ++++AA+RDVGRAL MPY  VD++ KLIP + +  
Sbjct: 414  RDEVIDYVVEKYGRDKVAQIITFDRMKSRAAVRDVGRALDMPYPDVDKVAKLIPFNVSS- 472

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               +A+      +     +  V +LL+ +  +EG+ RH S HAAG+VI   PL  +VP+ 
Sbjct: 473  -IEEALELSHELKALYDGNREVKQLLDYASHIEGIARHCSQHAAGVVISPEPLVNIVPL- 530

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
            + +     VTQ+ M+ +EK GL+K DFLGL+TL++++++L  +A+      DL+ +P DD
Sbjct: 531  KAINGTQIVTQYPMEPLEKLGLVKMDFLGLRTLSMIEETLKNIAKNGKKVPDLTQLPMDD 590

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNN 663
              T+ +L    T+G+FQLESSGMRQ L+ + PD  +DIIA+++LYRPGP+ + +V  Y  
Sbjct: 591  RATFEMLQRGDTMGVFQLESSGMRQLLKKLCPDSFQDIIAVLALYRPGPLGSGMVDQYIE 650

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+  I   HP ++  LKET G+I+YQEQVMQIA  L+GY+L +AD+LRRAMGKK  E
Sbjct: 651  RKHGRSPISYPHPALEEALKETYGIILYQEQVMQIAARLAGYTLGQADILRRAMGKKKVE 710

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM++Q++ F+ G  +N +S   A  IF+L+  FA YGFNKSH+AAYA+ISYQTA++K HY
Sbjct: 711  EMEEQRQVFVKGCLENAVSAEQANEIFDLIQYFAGYGFNKSHSAAYAMISYQTAYLKAHY 770

Query: 784  PVEFLAASMTLEMDNVEKI-KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            PVEFLAA ++  +   ++I  ++ ++ R   I+++PP VN     F    + + + L A+
Sbjct: 771  PVEFLAAFLSSHIGAKKEILARYVREVRSDGIEVLPPDVNESEAGFTAVGDVVRFGLTAV 830

Query: 843  KGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
               G+     I++A  +  P+ SL DF SR+D + +N+ V+ESL+  GA D    +R Q+
Sbjct: 831  AKAGSGAVEAILKARKEGGPYKSLWDFVSRIDLRAVNKSVIESLIGVGAFDGLHSNRRQI 890

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLG 960
            L+SL  + +    +++++    + +F+ +     D +  L          + E E+  +G
Sbjct: 891  LESLPVLLEARARLDEDKF--QQRLFSLDGNDSLDVEPALVDIEDFEFHEKLELEKDAVG 948

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y SGHP + Y+  +RK       E +          +  +V    +K T+KG  +G V 
Sbjct: 949  LYISGHPFEAYEERVRKYAYCTPSELIHWCSPQAKPLVGGIVTDVAEKYTKKGDLMGIVG 1008

Query: 1020 FSEPAKEYEANFFP 1033
              +   + E   FP
Sbjct: 1009 VEDLDAKLEVVCFP 1022


>gi|304409577|ref|ZP_07391197.1| DNA polymerase III, alpha subunit [Shewanella baltica OS183]
 gi|307303935|ref|ZP_07583688.1| DNA polymerase III, alpha subunit [Shewanella baltica BA175]
 gi|304352095|gb|EFM16493.1| DNA polymerase III, alpha subunit [Shewanella baltica OS183]
 gi|306912833|gb|EFN43256.1| DNA polymerase III, alpha subunit [Shewanella baltica BA175]
          Length = 1157

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1047 (39%), Positives = 595/1047 (56%), Gaps = 37/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NN    ++F      
Sbjct: 1    MSD-PRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q       + ++ ++     GYQ L +++S+ YL  Q
Sbjct: 60   AGIKPIIGADFWM----------QVPGFEGELCALTIIAMNNIGYQNLTQIISQAYLRGQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                V I   WL     EG+++L+G   G + +A    +S   E     ++  F DR ++
Sbjct: 110  VAGRVVIDQEWLLTY-NEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFL 168

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R     V LA    +P+VATN  +FL  ED++AH++ +A+     ++  
Sbjct: 169  ELIRTGRPDEERYLHMAVILAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   YL++  EM  +F+D+P AL N+VEIA+RC+  ++++              
Sbjct: 229  RRPKKYSEQQYLRSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYF-----LPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L + +  GLE RL          A+   +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMSIEDFLVDCSRKGLEERLEFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   +   +E+   D  V  L+++ +KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPEPGMTL-AKAFEVEPALQESYDGDEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +          
Sbjct: 523  TDFAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVKNGRK 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             + +  I   D   + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PIRIEAISLTDPACFRLLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP VN     
Sbjct: 763  AYALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFK 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+
Sbjct: 823  FTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLI 882

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945
             AGALD  G  R  ++ +L    + A    K       ++F        D K    + + 
Sbjct: 883  CAGALDNLGPHRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTP 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                +  E E+  LG Y +GHP++ Y   L+       ++   T RG   + A +VV+ +
Sbjct: 943  WPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTAKAAGLVVATR 1002

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++GS++G +T  + +   E   F
Sbjct: 1003 VMLTKRGSKMGLLTLDDKSARLEIMLF 1029


>gi|288962247|ref|YP_003452542.1| DNA polymerase III subunit alpha [Azospirillum sp. B510]
 gi|288914513|dbj|BAI75998.1| DNA polymerase III subunit alpha [Azospirillum sp. B510]
          Length = 1167

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 507/1056 (48%), Positives = 683/1056 (64%), Gaps = 37/1056 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  F+HL+VHS+YSL EGA+ +  ++      Q PA+A+TDT NLF ALEF+  A  
Sbjct: 1    MPHA-DFIHLRVHSAYSLSEGAIKVKELVKLCLKQQMPAVAVTDTGNLFGALEFALAASD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLD 123
            AG+QPIIG  L I      +            P  +VLL    EGY+ L  LVS+ +L  
Sbjct: 60   AGVQPIIGTVLGITRVGPAQTKPGLPGKAAATPDQLVLLCQNEEGYRNLAALVSKAFLES 119

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  ++ L  L E  + GLI LTGG +G + R        +A   L   K+LF  RLY
Sbjct: 120  DPLAGPQVALDAL-EGHSGGLIALTGGPAGSVGRLLHEGQKDLALDVLERLKRLFPGRLY 178

Query: 184  VNLQRHRGY-------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            V LQRH G        +   E  ++ LAY H LPLVATN+  F +E+ YEAHD L+ +A 
Sbjct: 179  VELQRHEGGRGQFAAVENAIEPALIDLAYAHGLPLVATNDCYFATEDMYEAHDALLCIAE 238

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
               +SQ DR R+TPDH  K+  EM  +F+DLPEA++NTV IARRCS++L+         +
Sbjct: 239  GAYLSQDDRRRLTPDHRFKSAEEMRRLFADLPEAVDNTVAIARRCSYLLKPIK----PIL 294

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-------YRQRLDFELNVIA 349
                 +  + E++ELR ++ AGLE+RL +         +        Y +RL+FEL+VI 
Sbjct: 295  PPFACEGGRTEDDELRAQSRAGLEMRLEKVVFTPEMTPEQREETRKTYFERLEFELDVIV 354

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +MKF GYFLIV+DFI+WAK  +IPVGPGRGSGAGSV A+ALTITD+DPLRF LLFERFLN
Sbjct: 355  KMKFPGYFLIVSDFIKWAKNEDIPVGPGRGSGAGSVVAWALTITDLDPLRFGLLFERFLN 414

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFCQDRR+EVIRYVQ KYG++RVAQIITFG LQA+A LRDVGR LQMPY
Sbjct: 415  PERVSMPDFDIDFCQDRREEVIRYVQKKYGYDRVAQIITFGKLQARAVLRDVGRVLQMPY 474

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTH 528
             QVD++CK++PN+PA+PV+LQ   D     R+AR +D +V  L++I+ KLEGLYRHASTH
Sbjct: 475  GQVDKICKMVPNNPANPVTLQQALDSEEMLRQARDSDDTVRHLVDIALKLEGLYRHASTH 534

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAG+VIGDRPL +LVP+YRD RSD+PVTQFNMK++E+AGL+KFDFLGLKTLT+L+ ++D 
Sbjct: 535  AAGVVIGDRPLQELVPLYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKTAVDL 594

Query: 589  LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            + ++    DL+ +P DD ++Y LL+     G+FQLESSGMR  L  ++P+ +EDIIALVS
Sbjct: 595  IPEKP---DLTTVPLDDEKSYQLLSRAEATGVFQLESSGMRDVLRRLKPNRLEDIIALVS 651

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+DNI  Y   KNG+EK   +H  ++ +LKET G++IYQEQVMQIAQ+LSGYSL 
Sbjct: 652  LYRPGPMDNIPKYIRVKNGEEKADYMHDSLEGILKETFGIMIYQEQVMQIAQVLSGYSLG 711

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKKIKEEMD Q++ F  GA   G+   +A  IF+ + KFA YGFNKSHAAA
Sbjct: 712  GADLLRRAMGKKIKEEMDNQRKIFCDGAEARGVKADLASMIFDQVMKFAGYGFNKSHAAA 771

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+++Y TA++K ++PVEF+AASMTL++ N +K+  F Q+  +  ++++ P +N     F
Sbjct: 772  YALVAYHTAYLKANHPVEFMAASMTLDLGNTDKLNVFRQELARLRVKLLTPDINKSDSIF 831

Query: 829  KVGD-----NRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVL 882
             V         + Y+LAA+KGVG    + ++ E   + PF SL DF  R+D K +N+R L
Sbjct: 832  GVEQLADGSKAVRYALAAVKGVGLPAMKAVVEERRRNGPFRSLFDFARRLDLKTINKRQL 891

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN---KHENIFAHEKGTFSDKIT 939
            E+L  AGA D    +R Q+  +L+ I +YAQ     R +             G    +  
Sbjct: 892  ENLACAGAFDGLNPNRAQVHAALETIIRYAQAEAAERDSGIGNLFGGGFGGGGGGLPEPE 951

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG---NNIR 996
            + K        + ++E   +GFY S HPLD Y   L +M +    E    I        +
Sbjct: 952  MPKVKDWEPLEKLKHEFGAIGFYLSAHPLDAYSGPLGRMKVVRSAELQTAIAKGGSTRYK 1011

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +A ++VSK++K  + G+R  +V  S+    YE   F
Sbjct: 1012 MAGIIVSKKEKTAKSGNRFAFVELSDATGGYEVTLF 1047


>gi|153941212|ref|YP_001392730.1| DNA polymerase III DnaE [Clostridium botulinum F str. Langeland]
 gi|152937108|gb|ABS42606.1| DNA polymerase III, alpha subunit [Clostridium botulinum F str.
            Langeland]
 gi|295320711|gb|ADG01089.1| DNA polymerase III, alpha subunit [Clostridium botulinum F str.
            230613]
          Length = 1185

 Score =  768 bits (1984), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1071 (34%), Positives = 595/1071 (55%), Gaps = 55/1071 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            EK P +V L  H+ YSLL+ +  +++++ +       +IAITD   ++  ++F ++A   
Sbjct: 8    EKKPEWVSLHQHTEYSLLDSSAKISDLIKRAKEFGMKSIAITDHGVMYGCVDFYKEAIKQ 67

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PIIGC++ +  +         +        +VLLV    GY+ L+E+VS    ++  
Sbjct: 68   GIKPIIGCEIYVASKSMYIKQQDKEN---ETHHLVLLVKNEIGYKNLMEIVSNAS-VEGF 123

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                R+   +L++  +EGLI L+    G +       + + A +  L +K +F +  Y+ 
Sbjct: 124  YYKPRVDHEFLKD-HSEGLIALSACLGGEVQANILKENLKKAGEVALIYKDIFKEGFYLE 182

Query: 186  LQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQ H   ++      +V+++   ++PLVATN+  ++ +EDY++HD+L+ +     V +++
Sbjct: 183  LQYHGMEEQLKVNETLVKMSKDLDIPLVATNDVHYIRKEDYKSHDILLCIQTGKTVEEEN 242

Query: 245  RPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R  +   YLK+  EM   FS +PEALENTV+I+  C+F    H   LP+F  +E  D 
Sbjct: 243  RMRYPSDQFYLKSPEEMYETFSYVPEALENTVKISEECNFDYNFHESKLPKFPLEEGVDP 302

Query: 304  QKEEENELRNKAVAG--LEVRLAQGAIAKGYHAQDYR-------------QRLDFELNVI 348
                   LR     G  L   + +  I K +   +               +RL++EL++I
Sbjct: 303  Y----EYLRKICFKGLFLRYEVLKDFIDKPFSIDEVLVYGDENKEAFDLIERLNYELSII 358

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M +  YFLIV DFI++A +  I  GPGRGS AGS+ AY L IT IDP++++L+FERFL
Sbjct: 359  KQMGYVDYFLIVWDFIRFANEKGIMTGPGRGSAAGSLVAYTLGITKIDPIKYNLIFERFL 418

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NPDR+SMPD D DFC +RR EVI YV  KYG   V+QIITFG++ A+A +RDVGRA+  P
Sbjct: 419  NPDRISMPDIDSDFCYERRGEVIDYVVEKYGKANVSQIITFGTMAARACIRDVGRAMNYP 478

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            Y++VDR+ K+IP      +  +A+  +   +EA   +  V  L+++++ LEGL RH STH
Sbjct: 479  YAEVDRIAKMIPTVLNITI-NKALELNPELKEAYDNEERVKALIDVARALEGLPRHTSTH 537

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAG+VI  + L   VP+ ++   +  VTQF M  +E+ GL+K DFLGL+TLT+++ ++  
Sbjct: 538  AAGVVIASQSLVNYVPLQKN--EESIVTQFTMGTLEELGLLKMDFLGLRTLTVMRDAVRI 595

Query: 589  LAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            + +   + +DL  I F+D E Y ++    T+G+FQLES+GM   ++ ++PD +EDIIA +
Sbjct: 596  IKENKGIDIDLDTIDFEDKEVYKMIGQGKTVGVFQLESAGMTSFMKELKPDSLEDIIAGI 655

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            SLYRPGP+  I  Y   KN    I      ++P+L  T   I+YQEQVMQI + L+GYS+
Sbjct: 656  SLYRPGPMAEIPRYIANKNNPLNIEYQTEKLEPILSVTYNCIVYQEQVMQIVRDLAGYSM 715

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADY 759
              +D++RRAM KK  + M++++  FI         G   NGI + +A ++F+ +  FA Y
Sbjct: 716  GRSDLVRRAMSKKKHDVMEQERRNFIYGNEDQGVKGCINNGIDENVANSLFDSMMDFASY 775

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSHAAAYAV+ +QTA++  +YP EF+AA +     + +K+  +   A+   I+I+ P
Sbjct: 776  AFNKSHAAAYAVVGFQTAYLIRYYPTEFIAAMLNSVKGDNDKVSFYVNFAKTLGIEIIAP 835

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLN 878
            ++N    +F V DNRI + L A+K VG     +I+ +   K  F  L DF ++VD+  +N
Sbjct: 836  NINESYSNFTVKDNRIIFGLTAVKNVGEKGIDNIVLSREQKDKFIDLSDFFNKVDTSIIN 895

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSD 936
            +R++ESL+ AGA DC    R ++L   + I    Q  ++N      N+F    +    S 
Sbjct: 896  KRLVESLIKAGAFDCLKVYRSKMLAVFEKIMDGIQKQKRNNIEGQVNLFMDIMDNKESSI 955

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--------- 987
             I        +     + E+ + G YFSGHPL+ Y+  L+        + +         
Sbjct: 956  DIKYPNIKEFDKKYILQMEKEMTGLYFSGHPLEEYEETLKIQTSHLISDIIPKESLEGNL 1015

Query: 988  -----ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 +   G+ + +  M+    +K TR    + ++   +     E   FP
Sbjct: 1016 VDTISSIKDGDKVVVGGMITHVSKKLTRNNDMMAFIVLEDLYSSIEVIVFP 1066


>gi|160874613|ref|YP_001553929.1| DNA polymerase III subunit alpha [Shewanella baltica OS195]
 gi|160860135|gb|ABX48669.1| DNA polymerase III, alpha subunit [Shewanella baltica OS195]
 gi|315266854|gb|ADT93707.1| DNA polymerase III, alpha subunit [Shewanella baltica OS678]
          Length = 1157

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1047 (39%), Positives = 595/1047 (56%), Gaps = 37/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NN    ++F      
Sbjct: 1    MSD-PRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q       + ++ ++     GYQ L +++S+ YL  Q
Sbjct: 60   AGIKPIIGADFWM----------QVPGFEGELCALTIIAMNNVGYQNLTQIISQAYLRGQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                V I   WL     EG+++L+G   G + +A    +S   E     ++  F DR ++
Sbjct: 110  VAGRVVIDQEWLLTY-NEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFL 168

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R     V LA    +P+VATN  +FL  ED++AH++ +A+     ++  
Sbjct: 169  ELIRTGRPDEERYLHMAVILAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   YL++  EM  +F+D+P AL N+VEIA+RC+  ++++              
Sbjct: 229  RRPKKYSEQQYLRSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYF-----LPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L + +  GLE RL          A+   +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMSIEDFLVDCSRKGLEERLEFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   +   +E+   D  V  L+++ +KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPEPGMTL-AKAFEVEPALQESYDGDEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +          
Sbjct: 523  TDFAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVKNGRE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             + +  I   D   + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PIRIEAISLTDPACFRLLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP VN     
Sbjct: 763  AYALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFK 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+
Sbjct: 823  FTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLI 882

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945
             AGALD  G  R  ++ +L    + A    K       ++F        D K    + + 
Sbjct: 883  CAGALDNLGPHRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTP 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                +  E E+  LG Y +GHP++ Y   L+       ++   T RG   + A +VV+ +
Sbjct: 943  WPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTAKAAGLVVATR 1002

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++GS++G +T  + +   E   F
Sbjct: 1003 VMLTKRGSKMGLLTLDDKSARLEIMLF 1029


>gi|77457343|ref|YP_346848.1| DNA polymerase III subunit alpha [Pseudomonas fluorescens Pf0-1]
 gi|77381346|gb|ABA72859.1| DNA polymerase III alpha subunit [Pseudomonas fluorescens Pf0-1]
          Length = 1173

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1065 (39%), Positives = 606/1065 (56%), Gaps = 57/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F +    
Sbjct: 1    MP--ASFVHLRLHTEYSLVDGLVRIKPLVKALTGMGMPAVAVTDQNNMCSLVKFYKNTMG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI G  L +  +D          P   +  I LLV  A+GY+ L EL+SR ++  Q
Sbjct: 59   AGIKPICGADLWLSNKD----------PDGPLSRISLLVMNAQGYRNLTELISRGFIDGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                V I   W+ E   EGLIML+    G I  A    +   AE     +  +F DR Y+
Sbjct: 109  RNGMVIIEREWVAE-ANEGLIMLSAAKEGEIGMAMIGGNPAEAEALAREWMAVFPDRFYL 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR +R  D  +    V LA     PLVATN+  F+ +ED+ AH+  + +     +   
Sbjct: 168  EVQRTNRPNDEEQLHGAVALADKLGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDP 227

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R +  +   YLK+  EM  +FSDLP+A+ENTVEIA+RC+  +++    LP +   +   
Sbjct: 228  RRSKNYSDQQYLKSAEEMAELFSDLPDAIENTVEIAKRCNIDVKLGKHFLPDYPIPDGMT 287

Query: 303  IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            I    +   R  +  GLE R                 Q Y  RL+FEL++I +M F GYF
Sbjct: 288  I----DEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 344  LIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV RA    +   DRL K
Sbjct: 404  FDVDFCMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSFGLADRLSK 463

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP +    +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI   
Sbjct: 464  MIPFEVGMTLE-KAYEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPT 522

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592
             L+   P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +      
Sbjct: 523  KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +D++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RP
Sbjct: 583  EPPLDIAFIPLDDKPTYQLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642

Query: 653  GPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +   + NRK+G+ ++   HP      + P+L  T G+I+YQEQVMQIAQ+++GY
Sbjct: 643  GPLQSGMVDDFINRKHGRAELAYPHPDYQYEGLQPVLAPTYGIILYQEQVMQIAQVMAGY 702

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  FI G + N I   +A NIF+L+ KFA YGFNKSH
Sbjct: 703  TLGGADMLRRAMGKKKPEEMAKQRGGFIEGCASNNIDADLAGNIFDLVEKFAGYGFNKSH 762

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAY ++SYQTAW+K HYP  F+AA ++ +M N +K+    ++ R   +++  P VNT  
Sbjct: 763  SAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822

Query: 826  VDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F V D  RI Y L AIKGVG      I EA    PF  L DFC+RVD K++N+R L+ 
Sbjct: 823  FKFTVNDEGRIVYGLGAIKGVGEGPVEAITEARQAGPFKDLFDFCARVDLKRINKRTLDG 882

Query: 885  LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+ +GALD  G                +R  LL +++   K A+   + R + H ++F  
Sbjct: 883  LIRSGALDRLGPYFHDEQKAYQANIDRNRAVLLAAMEEAIKSAEQTARTRDSGHADLFGG 942

Query: 930  E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +          K        R + E+  LG Y +GHP+D Y+  +R+   +   +  
Sbjct: 943  LFVEEDADVYAVHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +A M+++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1003 PARDTQ--TVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045


>gi|260434289|ref|ZP_05788259.1| DNA polymerase III, alpha subunit [Synechococcus sp. WH 8109]
 gi|260412163|gb|EEX05459.1| DNA polymerase III, alpha subunit [Synechococcus sp. WH 8109]
          Length = 1172

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1049 (36%), Positives = 582/1049 (55%), Gaps = 33/1049 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++      PAIA+TD   ++ A+E  +      ++P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPAMVERARQLGMPAIALTDHGVMYGAIELLKLCQGTDLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          +          +V+L   A GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPQPK----KEKRYHLVVLAKNATGYRNLVKLTSISHLRGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L++  +EGLI+ T    G I +A       VA K    ++++F D  Y+ 
Sbjct: 118  FSRACIDKELLKQ-HSEGLIIATACLGGEIAQAILRGRPDVARKVAAWYQEVFADDYYLE 176

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    +VV++A    + +VATN++ +LS++D EAHD L+ V    +++ + 
Sbjct: 177  IQDHGSPEDRIVNVEVVKIAKELGIQIVATNDAHYLSKQDVEAHDALLCVLTGKLITDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R R T   Y+K   EM  +F D   PE ++  +    + +  ++ +  +    + +    
Sbjct: 237  RLRYTGTEYIKTEEEMDLLFGDHLEPEVVQEAIANTVKVAEKVEPYDILGRYQMPRFPIP 296

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                  + LR     GL  RL      +     DY +R+  EL ++ +M F  YFL+V D
Sbjct: 297  EAHTPVSYLREVTEQGLRDRLE--LSPEAPLPDDYAERMAHELKIMEQMGFPTYFLVVWD 354

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I++A++ NIPVGPGRGS AGS+ AY L IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 355  YIRFARERNIPVGPGRGSAAGSLVAYCLGITNIDPITNCLLFERFLNPERKSMPDIDTDF 414

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KLIP  
Sbjct: 415  CIERRSEVIDYVTERYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 474

Query: 483  PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
               P  L+A+    + +  FRE   ADP+V R ++++ ++EG  +    HAAG+VI   P
Sbjct: 475  RGKPAKLKAMIGEESPNPEFREKYEADPTVKRWVDMAMRIEGTNKTFGVHAAGVVIAADP 534

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597
            L +LVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT+++K+L+ +    G +VD
Sbjct: 535  LDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIEKTLELVEVSSGTRVD 593

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               +P  D ET+ LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYRPGP+D 
Sbjct: 594  PDKLPPQDEETFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPGPLDA 653

Query: 658  --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  + NRK+G+E I   H +++P+L ET G+++YQEQ+M+IAQ L+GYSL +AD+LRR
Sbjct: 654  GLIPKFINRKHGREAIDFAHAILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQADLLRR 713

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK   EM K +  F+ GA + G+ + +A  +F+ +  FA+Y FNKSH+ AY  ++YQ
Sbjct: 714  AMGKKKVSEMQKHRGIFVKGAGERGVDEKVADELFDQMVLFAEYCFNKSHSTAYGAVTYQ 773

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYPV ++AA +T+     +K++++  +     I++MPP VN    DF    +RI
Sbjct: 774  TAYLKAHYPVAYMAALLTVNAGAADKVQRYISNCNAMGIEVMPPDVNASLTDFTPNGDRI 833

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L+A++ +G    R ++ A  +D PF SL D C R+ S  LNRR LESL+  GALD  
Sbjct: 834  LFGLSAVRNLGDGAIRQLIAARDSDGPFRSLADLCDRIPSSVLNRRGLESLIHCGALDAM 893

Query: 895  GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--------KGTFSDKITLEKFS 944
                +R QL+  LD +  +A    K+R +   N+F               S         
Sbjct: 894  DPQANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAPAADADGPADLSHAPKAAPVP 953

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                + +   E+ ++GFY S HPL    P  + +   G            +   AMV   
Sbjct: 954  DYPPTEKLRLEKDLVGFYLSDHPLKQLTPSSKLLAPIGLGSLEEQPDKAKVSAIAMVAEM 1013

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +Q  TRKG R+  +   +     EA  FP
Sbjct: 1014 RQVTTRKGDRMAILQLEDLTGSCEAVVFP 1042


>gi|149914036|ref|ZP_01902568.1| DNA polymerase III subunit alpha [Roseobacter sp. AzwK-3b]
 gi|149812320|gb|EDM72151.1| DNA polymerase III subunit alpha [Roseobacter sp. AzwK-3b]
          Length = 1167

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 501/1058 (47%), Positives = 675/1058 (63%), Gaps = 48/1058 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  SP F+HL+VH+ YSLLEGA+ L ++         PA+A+TDTNN+F+ALEFS  A  
Sbjct: 1    MSSSPRFIHLRVHTEYSLLEGAVRLKSLAGLCEKAGMPAVAVTDTNNMFAALEFSVTASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPI+GCQ+D+D  +    T  G+   P  P +VLL     GY+ L++L S +YL   
Sbjct: 61   AGIQPIMGCQVDLDYLE----TQPGERAKPPAP-LVLLAQNEAGYENLMKLNSCLYLRGD 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G Q   + L+ L E   +G+I LTGG  GP+ R         A+  +      F DRLYV
Sbjct: 116  G-QLPHVTLAEL-EAHAQGVICLTGGPDGPVGRLLQAGQRPAAKALMGQLLAAFADRLYV 173

Query: 185  NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G D      R  E   V++AY   LPLVATN+  F     YEAHD L+ VA  T
Sbjct: 174  ELQRHPGEDGAPEAERLTERGFVEMAYAMGLPLVATNDVYFPDAGMYEAHDALLCVAEGT 233

Query: 239  VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+T  HY K   EM ++F+DLPEALENTVEIARRC+F             +
Sbjct: 234  YVDQAEPRRRLTAQHYFKTPQEMATLFADLPEALENTVEIARRCAF--------GAYRRD 285

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    +E +ELR +A  GLE RLA   I      ++Y +RL+FEL +I  M F GYF
Sbjct: 286  PILPRFADDEVDELRRQAKEGLEARLA--VIPHAASVEEYHKRLEFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK+ +IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKEQDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVD+L K
Sbjct: 404  FDIDFCMDRREEVIQYVQRKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDKLSK 463

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS+Q  +A + R REA  ++  VDRLL    K+EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIQQALAQEDRLREAARSEEVVDRLLNYGMKVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++  +   G  +
Sbjct: 524  RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAIGQIHAEGRDL 583

Query: 597  DLS------------------LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
             ++                   IP DD +TY L     T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  HIAADGSPIYEPFEGAENDIGQIPLDDAKTYELYARARTVAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KN   +   +HPLID +L ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPKYCEVKNALSERDRLHPLIDHILDETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ ++GY+L  AD+LRRAMGKKI+  MD ++ +FI+GA  NG+    A+ ++ LL KFA+
Sbjct: 704  AQEMAGYTLGGADLLRRAMGKKIQAAMDAERPKFIAGAKANGVDDAKALEVWNLLDKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + Q+ ++   +   
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLQLPYA 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            PP VN     F+V    ++Y+L A+K VG    R I+E   DKPF +L D   RVD K++
Sbjct: 824  PPCVNRSDAVFQVRGGVLHYALGALKNVGVEAMRLIVEGRGDKPFATLYDVARRVDLKRI 883

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             +R LE L  AGA D    +R ++  S++ +  Y+  +   +T+   ++F  E G    +
Sbjct: 884  GKRPLEMLARAGAFDELDRNRRRVFDSIEPLMNYSAAIFDQKTSSQVSLFG-EAGDDLPE 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNI 995
              L        + R   E + +GFY SGHPLD Y   LR+  +K  +E  A    +G  +
Sbjct: 943  PRLSPVEDWLPAERLTEEFKAIGFYLSGHPLDDYMGALRRKDVKTLDEVTAMAEQKGALV 1002

Query: 996  -RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++A +V  +Q++K+ +G+R  +V  S+    +E   F
Sbjct: 1003 AKMAGVVSGRQERKSARGNRFAFVQLSDTTGGFEVTLF 1040


>gi|298488347|ref|ZP_07006379.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
 gi|298157169|gb|EFH98257.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
          Length = 1173

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1065 (38%), Positives = 598/1065 (56%), Gaps = 57/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  
Sbjct: 1    MP--ASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PI G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q
Sbjct: 59   SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F DR Y+
Sbjct: 109  RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWMAVFPDRFYI 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +   
Sbjct: 168  EVQRTNRNNDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDP 227

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R    +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   
Sbjct: 228  RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287

Query: 303  IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            I    +   R  +  GLE R                 Q Y  RL+FEL++I +M F GYF
Sbjct: 288  I----DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 344  LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K
Sbjct: 404  FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP +    +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI   
Sbjct: 464  MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPT 522

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592
             L+   P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +      
Sbjct: 523  KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +D++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RP
Sbjct: 583  EEPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642

Query: 653  GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V +               +   +  + P+L  T G+I+YQEQVMQIAQ+++GY
Sbjct: 643  GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH
Sbjct: 703  TLGGADMLRRAMGKKKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSH 762

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAY ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT  
Sbjct: 763  SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822

Query: 826  VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F V  D RI Y L AIKGVG      I +A  + PF  L DFC+RVD K++N+R L+ 
Sbjct: 823  FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDG 882

Query: 885  LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+ +GALD  G                +R  LL +L+   + A+   ++  + H ++F  
Sbjct: 883  LIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGG 942

Query: 930  E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +          K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +  
Sbjct: 943  LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|319775318|ref|YP_004137806.1| DNA polymerase III subunit alpha [Haemophilus influenzae F3047]
 gi|329122686|ref|ZP_08251264.1| DNA-directed DNA polymerase III alpha subunit [Haemophilus aegyptius
            ATCC 11116]
 gi|317449909|emb|CBY86121.1| DNA polymerase III alpha subunit [Haemophilus influenzae F3047]
 gi|327472560|gb|EGF17990.1| DNA-directed DNA polymerase III alpha subunit [Haemophilus aegyptius
            ATCC 11116]
          Length = 1159

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1048 (38%), Positives = 596/1048 (56%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYDEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +          +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGADVKV----------KSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQR-G 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 110  YNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    ++ R     ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +   
Sbjct: 169  ALSRTGRPNQERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++       +   +   
Sbjct: 229  KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA     +         Y +RL  EL+VI +M F GYFLI
Sbjct: 284  GDLSTEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+ +++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     T  D +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A +VV+ 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1003 RIAMTKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|113955565|ref|YP_730835.1| DNA polymerase III subunit alpha [Synechococcus sp. CC9311]
 gi|113882916|gb|ABI47874.1| DNA polymerase III, alpha subunit [Synechococcus sp. CC9311]
          Length = 1174

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1052 (36%), Positives = 580/1052 (55%), Gaps = 36/1052 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++ +      PA+A+TD   ++ A+E  +    AGI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPQMVGRAKELGMPALALTDHGVMYGAVELLKLCKGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          +          +V+L   A GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPQPK----KERRYHLVVLAKNATGYRNLVKLTSISHLRGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 +    L++ G EGLI+ T    G I +A   +   VA    L +++ FGD  Y+ 
Sbjct: 118  FSRACVDKQLLKQYG-EGLIVATACLGGEIPQAIMRDRPDVARDVALWYQQTFGDDFYLE 176

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V++A    +PL+ATN++ +L+  D EAHD L+ V    ++S   
Sbjct: 177  IQDHGSPEDRIVNVEIVRIAKELGIPLIATNDAHYLTRNDVEAHDALLCVLTGKLISDVK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R R T   YLK+  EM  +F D   P+ +   +    + +  ++ +  +    + +    
Sbjct: 237  RLRYTGTEYLKSEEEMSRLFVDHLEPDVVAEAISNTVQVADKVEDYDILGRYQMPRFPIP 296

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                  + LR     GL  RL   +        +Y  RL  EL ++ +M F  YFL+V D
Sbjct: 297  EPHTPVSYLREVTEQGLRNRLEIDSET--AIDPNYGDRLSHELKIMEQMGFPTYFLVVWD 354

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I++A++  IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 355  YIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDIDTDF 414

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KLIP  
Sbjct: 415  CIERRGEVIDYVTRRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 474

Query: 483  PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
               P  L A+    + +  FRE    DP V R ++++ ++EG  +    HAAG+VI   P
Sbjct: 475  RGKPAKLAAMIGEESPNPEFREKYKKDPVVKRWVDMAMRIEGTNKTYGVHAAGVVIAADP 534

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597
            L +LVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +A     KVD
Sbjct: 535  LDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVAATIGEKVD 593

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               +P +D ETY LL      GIFQLES+GMRQ +  ++P  +EDI ++++LYRPGP+D 
Sbjct: 594  PDKLPLEDPETYALLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILALYRPGPLDA 653

Query: 658  --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  + NRK+G+E I   H  I+P+L+ET G+++YQEQ+M+IAQ ++GYSL EAD+LRR
Sbjct: 654  GLIPKFINRKHGRETIDFAHHSIEPILQETYGIMVYQEQIMKIAQDMAGYSLGEADLLRR 713

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK   EM K +  F+ GAS  G+ K +A  +F+ +  FA+Y FNKSH+ AY  ++YQ
Sbjct: 714  AMGKKKVSEMQKHRGIFVQGASDRGVDKKVADELFDQMVLFAEYCFNKSHSTAYGAVTYQ 773

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYPV ++AA +T+     +K++++  +     I++MPP +N   +DF    +RI
Sbjct: 774  TAYLKAHYPVAYMAALLTVNAGASDKVQRYISNCNAMGIEVMPPDINASGIDFTPKGDRI 833

Query: 836  YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L+A++ +G    R ++ +   +  F SL D C R+ S  LNRR +ESL+  GA+D  
Sbjct: 834  LFGLSAVRNLGDGAIRAVIGSRESEGAFQSLADLCDRLPSAVLNRRSMESLIHCGAMDAL 893

Query: 895  GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-----------KITLE 941
                +R QL+  LD +  +A    K+R +   N+F       SD                
Sbjct: 894  EPEANRAQLMADLDLLLDWATSRAKDRASGQGNLFDLMAAASSDGAEDAGTDLSLAPKAP 953

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                 + + +   E+ ++GFY S HPL    P  + +   G            +   AMV
Sbjct: 954  PVKDYHPTEKLRLEKDLVGFYLSDHPLKQLTPPAKLLAPIGLGSLEEQADKAKVSAIAMV 1013

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +Q  TRKG R+  +T  +     EA  FP
Sbjct: 1014 SEMRQVTTRKGDRMAVLTLEDLTGSCEAVVFP 1045


>gi|126733665|ref|ZP_01749412.1| DNA polymerase III subunit alpha [Roseobacter sp. CCS2]
 gi|126716531|gb|EBA13395.1| DNA polymerase III subunit alpha [Roseobacter sp. CCS2]
          Length = 1165

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 489/1057 (46%), Positives = 677/1057 (64%), Gaps = 48/1057 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+ H+ YSLLEGA+ +  +   +A    PA+A+TD+NN+F ALEFS+ A  
Sbjct: 1    MTNDPRFIHLRTHTEYSLLEGAIPVKKLPGLVAGMGMPAVAVTDSNNMFCALEFSEGASK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPI+GCQ+D+        T +          IVLL  +  GY  L++L S  YL   
Sbjct: 61   AGIQPIVGCQVDVTF-----ATPEPGKRAEAPAPIVLLAQSEAGYMNLMKLNSCAYLDAD 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G Q  ++ L    +   EGLI L+GG  GP+ R         AE  +     ++ DRLY+
Sbjct: 116  G-QLPQVSLDEFAQYH-EGLICLSGGPDGPVGRLLRQGQRPKAEAIVDRLAAIYTDRLYI 173

Query: 185  NLQRHRGY-----DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             LQRH G      +R  E   V++AY   LPLVATN+  F   E YEAHD L+ ++    
Sbjct: 174  ELQRHPGDGLPEAERLSERGHVEMAYAKGLPLVATNDVYFPKTELYEAHDALICISEGAY 233

Query: 240  -VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
               Q+ R R+TP HY+K+  EM ++F+DLPEA+ENTVEIA+RC+F             + 
Sbjct: 234  VDQQEARRRLTPQHYMKSPQEMATLFADLPEAIENTVEIAKRCAFK--------TYKRDP 285

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                   +E  ELR +A  GL+ RLA   I      ++Y +RL+FEL +I  M F GYFL
Sbjct: 286  ILPKFADDEVAELRRQAEQGLKDRLA--VIPHAAPVEEYEKRLEFELGIIEGMGFPGYFL 343

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVADFI+WAK   IPVGPGRGSGAGS+ AYAL ITD+DPLR+SLLFERFLNP+R+SMPDF
Sbjct: 344  IVADFIKWAKDEGIPVGPGRGSGAGSLVAYALLITDLDPLRYSLLFERFLNPERVSMPDF 403

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFC DRR+EVIRYVQ+KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL K+
Sbjct: 404  DIDFCMDRREEVIRYVQDKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSKM 463

Query: 479  IPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   PVS++  +AD+ R RE    +  VDRLL  +Q++EGL R+ASTHAAG+VIGDR
Sbjct: 464  IPVEGVKPVSIEKALADEPRLREEAKNEEVVDRLLTYAQQVEGLLRNASTHAAGVVIGDR 523

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ------ 591
            PL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + +      
Sbjct: 524  PLDELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVELIKKAGRPLN 583

Query: 592  ------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
                         G + D+  IP DD ++Y L ++  T  +FQ+ESSGM  AL+ M+P+C
Sbjct: 584  IAADGTQLYDVLEGFEYDIGAIPLDDEKSYALYSSAKTTAVFQVESSGMMDALKRMKPNC 643

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            IEDI+ALV+LYRPGP++NI  Y   KNG++ + SIHP ID +L ETQG+I+YQEQVM+IA
Sbjct: 644  IEDIVALVALYRPGPMENIPTYCEVKNGQKDLESIHPSIDHILAETQGIIVYQEQVMEIA 703

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q+++GYSL  AD+LRRAMGKKI EEM K++ +F +GA  NG+    A  +F+LL KFA+Y
Sbjct: 704  QVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEAGAKANGVEPKKAREVFDLLEKFANY 763

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMP 818
            GFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + Q+ ++   I+  P
Sbjct: 764  GFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLGIYFQEVKKGLGIEYTP 823

Query: 819  PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
            P VN     F V D ++ Y+L A+K VG    + I+E   DK F +L DF  R D K+++
Sbjct: 824  PCVNRSMATFDVKDQKLVYALGALKNVGVEAMKLIVEGRGDKEFVNLFDFARRCDLKRIS 883

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            +R LE L  AGA D    +R +++ SLD +  Y+  +   +++   ++F    G    + 
Sbjct: 884  KRPLEMLARAGAFDVLDPNRRRVMMSLDALTAYSAAIHDQKSSNQVSLFGDA-GDDLQEP 942

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN---NI 995
             L        + R   E + +GFY SGHPLD Y   L++  +   ++ +    G     +
Sbjct: 943  RLMGGEDWLPAERLAEEFKAIGFYLSGHPLDDYMGPLKRKQVLTLDDVI-VRAGKGAAIV 1001

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++A  +  +Q++K+ +G+R  +V  S+P  +YE   F
Sbjct: 1002 KMAGTISGRQERKSARGNRFAFVQLSDPTGQYEVTMF 1038


>gi|163737024|ref|ZP_02144442.1| DNA polymerase III, alpha subunit [Phaeobacter gallaeciensis BS107]
 gi|161389628|gb|EDQ13979.1| DNA polymerase III, alpha subunit [Phaeobacter gallaeciensis BS107]
          Length = 1170

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 496/1061 (46%), Positives = 676/1061 (63%), Gaps = 51/1061 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+ H+ YSLLEGAL L  + D     + PAIA+TD+NNLF+ALEFS  A  
Sbjct: 1    MTNAPRFIHLRTHTEYSLLEGALRLKKLPDLCKKHEMPAIAVTDSNNLFAALEFSVAASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+D+           G+ P P  P +VLL  +  GY+ L++L S +Y+ + 
Sbjct: 61   AGVQPIMGCQVDL----RFTEPTPGERPKPPAP-LVLLAQSETGYEHLMKLNSCLYMREG 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              +   + L  L    +E +I L+GG  GP+ R         AE  +   K +F DRLYV
Sbjct: 116  S-ELAHVTLEELAA-HSEDVICLSGGPDGPVGRLLQMGQRPAAEALMQRLKAMFPDRLYV 173

Query: 185  NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       ++  E   V++AY  +LPLVATN+  F + E YEAHD ++ +A   
Sbjct: 174  ELQRHPGEHGQPEAEQATERGHVEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAEGA 233

Query: 239  VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+T  HY K++ EMV++F+DLPEA+ENTVEIA+RC+F+            +
Sbjct: 234  YVDQAEPRRRLTAQHYFKSQEEMVALFADLPEAIENTVEIAKRCAFMAY--------RRD 285

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    +E  ELR  A  GL+ RLA   I      +DY++RLDFEL +I  M F GYF
Sbjct: 286  PILPKFADDEVAELRRIANEGLQQRLA--VIPHAVSVEDYQERLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S+   + ++ R RE    +  VDRLL+   ++EGL R A THAAG+VIGD
Sbjct: 464  LIPVEGVKPMSIVDSLREEPRLREEAENEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL  LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q G  +
Sbjct: 524  RPLDALVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDL 583

Query: 597  D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                               ++ IP DD  TY L +   T+ +FQ+ES+GM  AL+ M+P 
Sbjct: 584  HVAADGTQLYDPPEGAENQINAIPLDDTVTYDLYSRAKTVAVFQVESTGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI VY   KNG  KI S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPVYCEVKNGLRKIQSVHPLIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++ Y+L  AD+LRRAMGKKIKE MD ++ +F  GA++NG+    A  +F+LL KFA+
Sbjct: 704  AQVMANYTLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVPAKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQT W+K ++PVEF+A  M  ++   +K+  + ++ ++  ++  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLSLPYV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS----ADKPFDSLEDFCSRVD 873
            PP VN     F V    + Y+L A+K VG    R +  A      DKPF +L DF  RVD
Sbjct: 824  PPCVNRSEATFNVVKGELVYALGALKNVGVEAMRLVTAARRESGEDKPFATLFDFARRVD 883

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             KK+ +R LE L  AG  D    +R ++  SL  +  Y+  V   R +   ++F  E G 
Sbjct: 884  LKKVGKRPLEMLARAGGFDQLDPNRRRVFDSLGALVDYSSAVHDQRNSSQVSLFG-EAGE 942

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
               +  L        + R   E + +GFY SGHPLD Y P L++  +   +E  A     
Sbjct: 943  DLPEPRLPGTPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVTAKAERG 1002

Query: 994  N--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                ++A +V  +Q++K+ +G+R  +   S+ +  YE   F
Sbjct: 1003 PFMAKMAGVVAGRQERKSARGNRFAFAQLSDTSGGYEVTLF 1043


>gi|78777108|ref|YP_393423.1| DNA polymerase III subunit alpha [Sulfurimonas denitrificans DSM
            1251]
 gi|78497648|gb|ABB44188.1| DNA polymerase III, alpha subunit [Sulfurimonas denitrificans DSM
            1251]
          Length = 1186

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1068 (36%), Positives = 611/1068 (57%), Gaps = 53/1068 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F HL +H+ YSLL+GA  L N++ ++      ++A+TD  N+F A++F Q+  A
Sbjct: 1    MSPQP-FTHLHLHTEYSLLDGANKLTNLVKQVKELGMTSVAMTDHGNMFGAIDFYQQMRA 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  I    +                I L     +GY+ L+ L S+ ++ + 
Sbjct: 60   AGIKPIIGMEGYIHNGGS-----MDDKSSKQRFHICLFAKNQKGYENLMYLSSKAFI-EG 113

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI  + L+   +EGLI  +    G ++     ++             A+   L +
Sbjct: 114  FYYFPRINKNELRA-HSEGLICTSACLQGEVNWHLNLSNERNVKNGALGYDGAKAVALEY 172

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            K++FGD  Y+ L RH   D+   + QV++L+   ++ +VATN++ +   ED + H+  M 
Sbjct: 173  KEIFGDDFYLELMRHGIGDQLFIDEQVLKLSKELDIKVVATNDTHYTFAEDAQYHEAFMC 232

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            +  + +    +R R +  + YLK+ ++M  +F+D+PEA+E+T EI  +C+  L++  P+ 
Sbjct: 233  IGMNKLYDDPNRMRHSVHEFYLKSPAQMAMLFADIPEAIEHTQEIVEKCNLELKLGDPVP 292

Query: 293  PRFI-----------EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            P F            E    D  + +      +   GLE RLA  A       Q+YR RL
Sbjct: 293  PNFKFSAEYARNDGLEINGSDKNEIDAEYFVYRCKIGLEHRLAHVA---EEKHQEYRDRL 349

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            DFE+NVI  MKF GY LIV DF++ AK+  I VGPGRGS AGS+ AY+L ITDIDP+++ 
Sbjct: 350  DFEMNVINSMKFPGYMLIVWDFVKVAKEKGIAVGPGRGSAAGSLVAYSLEITDIDPMKYD 409

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPD D+DF Q RR EVI YV  KYG  +VAQIITFGSL AK  +RDV
Sbjct: 410  LLFERFLNPERVSMPDIDMDFMQARRGEVIDYVVEKYGRNQVAQIITFGSLLAKGVIRDV 469

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLL 512
             R L MP S+ D++ KL+P++    ++ +             + + +E   +D +  R+ 
Sbjct: 470  ARVLDMPLSEADKMAKLVPDELGITLNGRTKNGEFIAGAFQKEPKLKELIDSDANAARVW 529

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            E ++KLEGL R++  HAAG+VI +  L +  P+Y+    D+ VTQ+++ ++E   LIKFD
Sbjct: 530  EFAKKLEGLKRNSGIHAAGVVISNEELWKKTPIYKPSGEDVFVTQYSLNYLEDVDLIKFD 589

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSL-IPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTL ++  ++  +  R  K  +   I  +D + Y ++    T+G+FQ+ESSGM+  
Sbjct: 590  FLGLKTLDVIDNAIKLIKFRYNKDVIWHEIDENDPKVYDVIRGGNTVGMFQIESSGMQDL 649

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++PD  ED+IA+++LYRPGP+++ ++  +  RK+G+EKI      ++P+LK T GVI
Sbjct: 650  NKQLKPDSFEDLIAVLALYRPGPMESGMLKSFIERKHGREKIEYTFDSMEPILKNTYGVI 709

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL  +D++RR+MGK  K++M    + F  GA   G+    A  +
Sbjct: 710  VYQEQVMQIVQTVGGFSLGYSDIIRRSMGK--KKDMSVYNDEFAKGAQSQGLDYAEASKL 767

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            F+++ KFA YGFNKSH+AAYA+I++QTAW+KT+YP EF+AA +T + DN +K+ ++  + 
Sbjct: 768  FDIIEKFAGYGFNKSHSAAYAMITFQTAWLKTYYPNEFMAALLTSDKDNTDKVVRYIDET 827

Query: 810  RQFNIQIMPPSVNTPCVDFKV--GDNR--IYYSLAAIKGVGTTTARHIMEASADK-PFDS 864
            ++  I++ PP +    ++F     DNR  + + L AIKGVG      I+E  AD   F S
Sbjct: 828  KRMGIELSPPDICDSQLEFSAITKDNREIVLFGLGAIKGVGEAAVLSILETRADGGEFKS 887

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            LEDF +R++  K+N+RV+ES++ AG  D FG+SR  LL  ++ I   A+     + N   
Sbjct: 888  LEDFVNRIEPSKVNKRVVESIIKAGGFDRFGFSRKALLDQIEKIVDTAKDASMAKKNAVG 947

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            ++F  +    S ++ L            E E+  +GFY SGHPLD ++  L ++      
Sbjct: 948  SLFGDDSEITSVELKLSNSPEYELKEILEFEKETIGFYISGHPLDEFRDKLDELDYTLSS 1007

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            E  +   G        +    +K ++KGS+ G V   +     E   F
Sbjct: 1008 ELESVKDGTYAIFIGKIEEIVKKTSKKGSQFGIVNLMDFHGNIELMLF 1055


>gi|255322503|ref|ZP_05363648.1| DNA polymerase III subunit alpha [Campylobacter showae RM3277]
 gi|255300411|gb|EET79683.1| DNA polymerase III subunit alpha [Campylobacter showae RM3277]
          Length = 1326

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1062 (36%), Positives = 599/1062 (56%), Gaps = 45/1062 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F HL +H+ YSLL+GA  +  +   +      A AITD  N+F A++F +    
Sbjct: 1    MSDFTDFTHLHLHTEYSLLDGANRIKELAKTLKKQGVKAAAITDHGNMFGAIDFYKTMKN 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+P+IG +  I   + L     G         + L+     GY+ L+ L S  Y+ + 
Sbjct: 61   EGIKPLIGIEAYIHNGEEL-----GDKSTKQRFHLCLIAKNEIGYKNLMYLSSMSYI-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF---------NSSQVAEKRLLTFK 175
                 RI    L+E  +EG+I  +    G ++                 + A++  L +K
Sbjct: 115  FYYYPRINKKILKE-HSEGIICSSACLQGEVNWNLNQSERNLRFGAGGYEAAKEAALWYK 173

Query: 176  KLFGDRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            ++FGD  Y+ + RH   D+ R   ++++LA    + ++ATN++ +  ++  +AH+V M +
Sbjct: 174  EVFGDDFYLEIMRHGIGDQRRIDDEILRLAKELNIKVIATNDTHYTFKQRADAHEVFMCI 233

Query: 235  AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCS----------- 282
            A + ++   +R R +  + Y+K  ++M  +F+D+PEA+ NT EI  +C            
Sbjct: 234  AMNKLLDDPNRLRHSVHEFYVKTPAQMSELFADIPEAVTNTQEIVDKCDLSIKLGDATPP 293

Query: 283  ---FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
               F L+  A       E +       +     ++   GLE RL           ++YR 
Sbjct: 294  NFKFTLEYAAERNLSLPEPDKRYSIPNDSVLFEHECRQGLEERLK---FVTAERHEEYRT 350

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RL  E+++I +M F GY +IV DFI  AKK  +PVGPGRGS AGS+ AY+L ITD+DPL 
Sbjct: 351  RLQREIDIINKMNFPGYMMIVWDFINEAKKRGVPVGPGRGSAAGSLVAYSLKITDLDPLP 410

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            ++LLFERFLNP+R+SMPD D+DFCQ+RR E+I YV  KYG   VAQ+ITFG L AK  +R
Sbjct: 411  YNLLFERFLNPERVSMPDIDVDFCQNRRGEIIDYVIEKYGKFNVAQVITFGKLLAKGVIR 470

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            DV R   MPY++ D + KLIP++    +  QA   + +  E   ++ + +R+ + +  LE
Sbjct: 471  DVARVCDMPYAEADAMAKLIPDELGITLE-QAFEKEPKIGELIASNSNANRIWKFALDLE 529

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPM--YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            GL R+A  HAAG+VI +  L    P+    +   D  VTQ+++K++E   LIKFDFLGLK
Sbjct: 530  GLNRNAGMHAAGVVISNEELWNKTPLFRQPNAEEDHFVTQYSLKYLEDVDLIKFDFLGLK 589

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLI-PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            TLT++  ++  + +R  K  +      +D +TY  +++  TLG+FQ+ES GM++    M+
Sbjct: 590  TLTVIDNAVKLVKKRFGKEIIWEQVNKNDPKTYETISSGQTLGLFQIESEGMQKVGADMR 649

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            PDC EDIIA++SLYRPGP+D I  +  RK+G E I  I P + P+L+ T GVI+YQEQVM
Sbjct: 650  PDCFEDIIAMISLYRPGPMDLIPDFIKRKHGLEPITYIFPELQPILEPTYGVIVYQEQVM 709

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            QI Q + G+SL  AD++RRAMGKKIKEEMD+ K +FI GA   G+    A  +FEL+  F
Sbjct: 710  QIVQTIGGFSLGGADLVRRAMGKKIKEEMDRLKGKFIEGAEAQGLDGKKADELFELILHF 769

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A YGFNKSHAAAY  +++QTA++KT+YP EF+AA +T E  N +KI ++  + ++ +I I
Sbjct: 770  ASYGFNKSHAAAYTYVTFQTAYLKTYYPAEFMAALITSEETNADKISRYIDECKRLDIAI 829

Query: 817  MPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            +PPSVN    +F V    G + I Y L AIKGVG     +I+E  A   F  ++DF SRV
Sbjct: 830  LPPSVNKSAKEFSVVSEGGKDAIIYGLGAIKGVGGAAIENILEEQAKGEFKDIDDFVSRV 889

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D+ K+N++V ESL+ +G+ D FG +R  +L +LDNI +  +     + N  E++F  ++ 
Sbjct: 890  DNFKVNKKVFESLIKSGSFDSFGLTRKMMLNNLDNIVEACKNAATIKKNAAESLFGDDES 949

Query: 933  TFSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
              + K +L    S      + + E   +G Y SGHPLD Y+  + K+     ++      
Sbjct: 950  MATVKTSLVRDDSELELKTKLKFELESVGIYLSGHPLDEYREQISKIKYTLSDKFDELPE 1009

Query: 992  GNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
               + L   +     + ++K G ++G +   +     E   F
Sbjct: 1010 NGEMLLVGKIEDLTTRISKKNGKKMGTIEMLDFHGTVEIAVF 1051



 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRI 1015
              +G  FS HPL+ YK  + ++     ++     + + I +   +    +  ++K G   
Sbjct: 1095 EAMGMDFS-HPLEKYKEQIEQIKHTPSKDFGKIDKTSEILVVGKIAEIAKIPSKKTGKEF 1153

Query: 1016 GWVTFSEPAKEYEANFF 1032
              ++  +    ++   F
Sbjct: 1154 MMLSVMDLFGTFKVAAF 1170


>gi|163740552|ref|ZP_02147946.1| DNA polymerase III subunit alpha [Phaeobacter gallaeciensis 2.10]
 gi|161386410|gb|EDQ10785.1| DNA polymerase III subunit alpha [Phaeobacter gallaeciensis 2.10]
          Length = 1170

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 496/1061 (46%), Positives = 676/1061 (63%), Gaps = 51/1061 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+ H+ YSLLEGAL L  + D     + PAIA+TD+NNLF+ALEFS  A  
Sbjct: 1    MTNAPRFIHLRTHTEYSLLEGALRLKKLPDLCKKHEMPAIAVTDSNNLFAALEFSVAASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+D+           G+ P P  P +VLL  +  GY+ L++L S +Y+ + 
Sbjct: 61   AGVQPIMGCQVDL----RFTEPTPGERPKPPAP-LVLLAQSETGYEHLMKLNSCLYMREG 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              +   + L  L    +E +I L+GG  GP+ R         AE  +   K +F DRLYV
Sbjct: 116  S-ELAHVTLEELAA-HSEDVICLSGGPDGPVGRLLQMGQRPAAEALMQRLKAMFPDRLYV 173

Query: 185  NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       ++  E   V++AY  +LPLVATN+  F + E YEAHD ++ +A   
Sbjct: 174  ELQRHPGEHGQPDAEQATERGHVEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAEGA 233

Query: 239  VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+T  HY K++ EMV++F+DLPEA+ENTVEIA+RC+F+            +
Sbjct: 234  YVDQAEPRRRLTAQHYFKSQEEMVALFADLPEAIENTVEIAKRCAFMAY--------RRD 285

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    +E  ELR  A  GL+ RLA   I      +DY++RLDFEL +I  M F GYF
Sbjct: 286  PILPKFADDEVAELRRIANEGLQQRLA--VIPHAVSVEDYQERLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S+   + ++ R RE    +  VDRLL+   ++EGL R A THAAG+VIGD
Sbjct: 464  LIPVEGVKPMSIVDSLREEPRLREEAENEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL  LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q G  +
Sbjct: 524  RPLDALVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDL 583

Query: 597  D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                               ++ IP DD  TY L +   T+ +FQ+ES+GM  AL+ M+P 
Sbjct: 584  HAAADGTQLYDPPEGAENQINAIPLDDTVTYDLYSRAKTVAVFQVESTGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI VY   KNG  KI S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPVYCEVKNGLRKIQSVHPLIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++ Y+L  AD+LRRAMGKKIKE MD ++ +F  GA++NG+    A  +F+LL KFA+
Sbjct: 704  AQVMANYTLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVPAKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQT W+K ++PVEF+A  M  ++   +K+  + ++ ++  ++  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLSLPYV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS----ADKPFDSLEDFCSRVD 873
            PP VN     F V    + Y+L A+K VG    R +  A      DKPF +L DF  RVD
Sbjct: 824  PPCVNRSEATFNVVKGELVYALGALKNVGVEAMRLVTAARRESGQDKPFATLFDFARRVD 883

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             KK+ +R LE L  AG  D    +R ++  SL  +  Y+  V   R +   ++F  E G 
Sbjct: 884  LKKVGKRPLEMLARAGGFDQLDPNRRRVFDSLGALVDYSSAVHDQRNSSQVSLFG-EAGE 942

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
               +  L        + R   E + +GFY SGHPLD Y P L++  +   +E  A     
Sbjct: 943  DLPEPRLPGTPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVTAKAERG 1002

Query: 994  N--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                ++A +V  +Q++K+ +G+R  +   S+ +  YE   F
Sbjct: 1003 PFMAKMAGVVAGRQERKSARGNRFAFAQLSDTSGGYEVTLF 1043


>gi|310764935|gb|ADP09885.1| DNA polymerase III subunit alpha [Erwinia sp. Ejp617]
          Length = 1160

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1049 (39%), Positives = 609/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL+VHS YS+++G     +++   A+   PAI ITD  NL   ++F   A  
Sbjct: 1    MAE-PRFIHLRVHSDYSMIDGLAKTGSLVKYAASMGMPAIGITDFTNLCGLVKFYGTAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG   ++            +     +  I +L +  +GYQ L  L+SR Y    
Sbjct: 60   QGMKPIIGADFNVS----------SEAMGDELTQITVLAADNDGYQNLTLLISRAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E   +GLI+L+GG  G + +     +     + L  +++ F DR Y+
Sbjct: 110  GPAGPTIDRDWLAE-HQQGLILLSGGRRGDVGKMLLRGNPTQVNECLNFYQQYFPDRYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    +P+VATN   FL+E D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEETYLHAAVELAVARGVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  YL++  EM  +FSD+PEALEN+VEIARRC+  +++       +   +   
Sbjct: 229  KRPRHYSPQQYLRSEEEMCELFSDIPEALENSVEIARRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIA---KGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L  K+  GLE RL         +     +Y +RLD ELNVI +M F GYFLI
Sbjct: 284  GEMSTEDFLVVKSKQGLEERLEFLFPDEKLRAVRRAEYDERLDIELNVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDLVIEHVAEMYGRKAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D   D PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  +       
Sbjct: 523  TDFAPLYCDENGDHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINAKRAKSGEA 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     I   H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKNPVEMAKQRGGFEDGAKARGVDGELAIKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQ 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA  +   F  L D C+R D+KK+NRR+LE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ +L +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMSALPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYSDVK 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 ++ + E+  LG Y +GHP++ Y   + +  G +  ++   T RG     A +VV+
Sbjct: 943  PWPEQIQLDGERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|330894609|gb|EGH27270.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. mori str.
            301020]
          Length = 1173

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1065 (38%), Positives = 597/1065 (56%), Gaps = 57/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL++H+ YSL++G + +  ++  +     PA+ +TD NN+ S ++F + A  
Sbjct: 1    MP--ASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVGVTDQNNMCSLVKFYKAAQG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PI G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q
Sbjct: 59   SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   W+ +  +EG+I L+    G I  A    +   A++ L  + ++F DR Y+
Sbjct: 109  RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYI 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +   
Sbjct: 168  EVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDP 227

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R    +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   
Sbjct: 228  RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287

Query: 303  IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            I    +   R  +  GLE R                 Q Y  RL+FEL++I +M F GYF
Sbjct: 288  I----DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 344  LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K
Sbjct: 404  FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP +    +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI   
Sbjct: 464  MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPT 522

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592
             L+   P+Y D   D  VTQF+   +E AG +KFDFLGL+TLT++  +L  + +      
Sbjct: 523  KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGRVKFDFLGLRTLTIIDWALKTINRDRAKVN 582

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +D++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RP
Sbjct: 583  EEPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642

Query: 653  GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V +               +   +  + P+L  T G+I+YQEQVMQIAQ+++GY
Sbjct: 643  GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH
Sbjct: 703  TLGGADMLRRAMGKKKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSH 762

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAY ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT  
Sbjct: 763  SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822

Query: 826  VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F V  D RI Y L AIKGVG      I +A  + PF  L DFC+RVD K++N+R L+ 
Sbjct: 823  FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDG 882

Query: 885  LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+ +GALD  G                +R  LL +L+   + A+   ++  + H ++F  
Sbjct: 883  LIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGG 942

Query: 930  E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +          K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +  
Sbjct: 943  LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|24373212|ref|NP_717255.1| DNA polymerase III subunit alpha [Shewanella oneidensis MR-1]
 gi|24347436|gb|AAN54699.1|AE015610_3 DNA polymerase III, alpha subunit [Shewanella oneidensis MR-1]
          Length = 1158

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1047 (40%), Positives = 603/1047 (57%), Gaps = 37/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NNL   ++F      
Sbjct: 1    MSD-PRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q         ++ ++    EGYQ L +++S+ YL  Q
Sbjct: 60   AGIKPIIGADFWM----------QVPGFEDEFCAVTIIAMDNEGYQNLTQIISQAYLRGQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +  V I   WL      G+++L+GG  G I +A    ++   E     +++ F  R ++
Sbjct: 110  VQGRVVIDQEWLITYNP-GILLLSGGKEGDIGKALLKGNNTQVESLCEFYQQHFEGRYFL 168

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R     V +A    +P+VATN  +FL  ED+EAH++ +A+     ++  
Sbjct: 169  ELLRTGRPDEERYLHMAVGVAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTLADP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   YL++  EM  +F+D+P AL NTVEIA+RC+  ++++              
Sbjct: 229  RRPKKYSEQQYLRSEDEMCELFADIPAALANTVEIAKRCNVTIRLNEYF-----LPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L + +  GLE RLA         A+   +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMSIEDFLVDCSKKGLEERLAFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   +   +E+  AD  V  L+++ +KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPEPGMTL-AKAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +          
Sbjct: 523  TDFSPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRS 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             + +  IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PIRIEAIPLDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + I+PP VN     
Sbjct: 763  AYALVSYQTLWLKTHFPPQFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKGLFK 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+
Sbjct: 823  FTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFTDLFDFCARIDLKKLNKRVIEKLI 882

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945
             AGALD  G  R  ++ +L      A    K       ++F        D K    + + 
Sbjct: 883  CAGALDALGPHRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVECTP 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                +  E E+  LG Y +GHP++ Y   L+       ++   T RG  ++ A +VV+ +
Sbjct: 943  WPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATR 1002

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++GS++G +T  + +   E   F
Sbjct: 1003 VMLTKRGSKMGLLTLDDKSARLEVMLF 1029


>gi|229845787|ref|ZP_04465899.1| DNA polymerase III subunit alpha [Haemophilus influenzae 7P49H1]
 gi|229810791|gb|EEP46508.1| DNA polymerase III subunit alpha [Haemophilus influenzae 7P49H1]
          Length = 1159

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1048 (38%), Positives = 595/1048 (56%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +          +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGADVKV----------KSTLCGDEYFDLTLLAKNNEGYKNITLLLSKAYQR-G 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   EG+I+L+GG+ G I +     +    E  +  +++ F D  Y+
Sbjct: 110  YNDLPYIDQDWLIE-HREGVIILSGGTQGDIGKKLLKENVAEIESAVAFYQEFFADHFYL 168

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R     ++LA +H LPLVATN+ +FL  +D+EAH++ +A+     +   
Sbjct: 169  ALTRTGKPDEERYIQAALKLAKSHGLPLVATNDVMFLKSDDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  T   Y ++  EM  +F+D+P ALENT+ IA+RCS  L++       +   +   
Sbjct: 229  KRPKYYTSQQYFRSEDEMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA     +         Y +RL  EL+VI +M F GYFLI
Sbjct: 284  GDLSTEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLQTAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFSPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVRKGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAEYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y + AIKGVG      ++ A      F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVTARNKGGIFKDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     T  D +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHEDVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A ++V+ 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1003 RIAITKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|259907557|ref|YP_002647913.1| DNA polymerase III subunit alpha [Erwinia pyrifoliae Ep1/96]
 gi|224963179|emb|CAX54663.1| DNA polymerase III subunit alpha [Erwinia pyrifoliae Ep1/96]
 gi|283477397|emb|CAY73313.1| DNA polymerase III alpha subunit [Erwinia pyrifoliae DSM 12163]
          Length = 1160

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1049 (39%), Positives = 609/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL+VHS YS+++G     +++   A+   PAI ITD  NL   ++F   A  
Sbjct: 1    MAE-PRFIHLRVHSDYSMIDGLAKTGSLVKYAASMGMPAIGITDFTNLCGLVKFYGTAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG   ++            +     +  I +L +  +GYQ L  L+SR Y    
Sbjct: 60   QGMKPIIGADFNVS----------SEAMGDELTQITVLAADNDGYQNLTLLISRAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E   +GLI+L+GG  G + +     +     + L  +++ F DR Y+
Sbjct: 110  GPAGPTIDRDWLAE-HQQGLILLSGGRRGDVGKMLLRGNPTQVNECLNFYQQYFPDRYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    +P+VATN   FL+E D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEETYLHAAVELAVARGVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  YL++  EM  +FSD+PEALEN+VEIARRC+  +++       +   +   
Sbjct: 229  KRPRHYSPQQYLRSEEEMCELFSDIPEALENSVEIARRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIA---KGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L  K+  GLE RL         +     +Y +RLD ELNVI +M F GYFLI
Sbjct: 284  GEMSTEDFLVVKSKQGLEERLEFLFPDEKLRAVRRAEYDERLDIELNVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDLVIEHVAEMYGRKAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D   D PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  +       
Sbjct: 523  TDFAPLYCDENGDHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINAKRAKSGEA 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     I   H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKNPVEMAKQRGGFEDGAKARGVDGELAIKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYQ 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I+EA  +   F  L D C+R D+KK+NRR+LE L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ +L +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMSALPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYSDVK 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 ++ + E+  LG Y +GHP++ Y   + +  G +  ++   T RG     A +VV+
Sbjct: 943  PWPEQIQLDGERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|78779238|ref|YP_397350.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT
            9312]
 gi|78712737|gb|ABB49914.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT
            9312]
          Length = 1165

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1043 (36%), Positives = 597/1043 (57%), Gaps = 28/1043 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+ L  HS YSLL+GA  ++ I+D+       +IA+TD   ++  L+  +K    GI+PI
Sbjct: 3    FIPLHNHSDYSLLDGASQISKIVDRACELGMDSIALTDHGVMYGVLDLVKKCKEKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ--- 127
            IG ++ +          +          +V+L     GY+ L++L +  +L     +   
Sbjct: 63   IGNEMYVINGSIDDPQPK----KEKRYHLVVLAKNRTGYKNLVKLTTISHLNGMRGRGIF 118

Query: 128  -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I    L +  +EGLI+ T    G I +A       VAE   L +K LF D  Y+ +
Sbjct: 119  SRPCIDKFLLSKY-SEGLIISTACLGGEIPQAILKGRLDVAEDIALWYKNLFADDFYLEI 177

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    DR    +++++   H++ ++ATN++ +LS  D EAHD L+ V    ++S + R
Sbjct: 178  QDHGSIEDRIVNIELLRIGKKHQIKVIATNDAHYLSNMDVEAHDALLCVLTGKLISDEKR 237

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R T   Y+K+ +EM+ +F D  +  +++  V      S  ++V        + K   + 
Sbjct: 238  LRYTGTEYIKSENEMLELFKDHIDDESIKEAVNNTVEISQKIEVFDLFGKYRMPKFPLNE 297

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              +  + L   +  GL  RL +  +      ++Y++RL  EL +I  M F  YFL+V D+
Sbjct: 298  DTDSFSLLTQLSNEGLLKRLKKNTLT--EVDENYKKRLSSELKIIKDMGFPDYFLVVWDY 355

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP R SMPD D DFC
Sbjct: 356  IKFARDNSIPVGPGRGSAAGSLVAYALQITNIDPVEHGLLFERFLNPARKSMPDIDTDFC 415

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRR+EVI YV N+YG ++VAQIITF  + +KA L+DV R L +PY + D+L KLIP   
Sbjct: 416  IDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGEADKLAKLIPVVR 475

Query: 484  AHPVSLQAIAD----DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
              P  L  + D       FR+  + D  V + ++++ ++EG  +    HAAG+VI   PL
Sbjct: 476  GKPHKLNEMIDKNSPSQEFRDKYINDNRVKKWIDLALRIEGTNKTYGVHAAGVVIASDPL 535

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
             +LVP+ R+      +TQ++M  IE  GL+K DFLGLK LT+++K++  + Q  G  +++
Sbjct: 536  DELVPLQRN-NEGQIITQYSMDDIESLGLLKMDFLGLKNLTMIEKTVSLINQSTGKTINI 594

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN- 657
              +P +D +T+ L+      GIFQLESSGM+Q ++  +P+ +EDI ++++LYRPGP+D  
Sbjct: 595  DNLPQNDDKTFELIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILALYRPGPLDAG 654

Query: 658  -IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             I  + NRKNG EK+   HP I  +L ET G+++YQEQ+M+IAQ L+GYSL +AD+LRRA
Sbjct: 655  LIPKFINRKNGNEKVDFPHPFIKSILTETYGIMVYQEQIMKIAQDLAGYSLGDADLLRRA 714

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK   EM K +  F+ G+ K G+++ +A ++F+ +  FA+Y FNKSH+ AY  ++YQT
Sbjct: 715  MGKKKVSEMVKHRNIFVDGSMKKGVNEKLANDLFDQMVLFAEYCFNKSHSTAYGAVTYQT 774

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K H+PV ++AA +++   + +K++++  +     I+++ PS+N   +DF + +N+I 
Sbjct: 775  AFLKAHFPVAYMAALLSVNSGSSDKMQRYISNCYSMGIEVISPSINFSGIDFTIKNNQIL 834

Query: 837  YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF- 894
            + L+AIK +G +  R+I+E   +   F SL D C R+ S  LN+R +ESL+  GALD F 
Sbjct: 835  FGLSAIKNLGDSAIRNIIENRNNSGSFKSLSDLCDRLPSNVLNKRSIESLILCGALDEFS 894

Query: 895  -GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG---TFSDKITLEKFSVENSSV 950
               +R QLL  L+++ ++A    ++R +   N+F  ++           L K    +   
Sbjct: 895  NNNNRAQLLSDLEHVIEWASSRNRDRLSGQGNLFDSKEEFSNVAFSDSQLAKVDDYSLID 954

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            + + E+++LGFY S HPL       + +      +   T     + L  M+   +Q  TR
Sbjct: 955  KLKLEKQLLGFYLSDHPLKHLTKPAKLVSPISVSQLEETKDRTKVSLVGMIPELKQITTR 1014

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
            KG R+  V   + +   EA  FP
Sbjct: 1015 KGDRMAIVQLEDLSGSCEAIVFP 1037


>gi|302187913|ref|ZP_07264586.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. syringae
            642]
          Length = 1173

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1065 (38%), Positives = 598/1065 (56%), Gaps = 57/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  
Sbjct: 1    MP--ASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PI G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q
Sbjct: 59   SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   W+ +  +EG+I L+    G I  A    +   A++ L  + ++F DR Y+
Sbjct: 109  RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYI 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +   
Sbjct: 168  EVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDP 227

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R    +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   
Sbjct: 228  RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287

Query: 303  IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            I    +   R  +  GLE R                 Q Y  RL+FEL++I +M F GYF
Sbjct: 288  I----DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 344  LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K
Sbjct: 404  FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP +    +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI   
Sbjct: 464  MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPT 522

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592
             L+   P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +      
Sbjct: 523  KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +D++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RP
Sbjct: 583  EEPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642

Query: 653  GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V +               +   +  + P+L  T G+I+YQEQVMQIAQ+++GY
Sbjct: 643  GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH
Sbjct: 703  TLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSH 762

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAY ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT  
Sbjct: 763  SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822

Query: 826  VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F V  D RI Y L AIKGVG      I +A    PF  L DFC+RVD K++N+R L+ 
Sbjct: 823  FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQSGPFKDLFDFCARVDLKRVNKRTLDG 882

Query: 885  LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+ +GALD  G                +R  LL +L+   + A+   ++  + H ++F  
Sbjct: 883  LIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGG 942

Query: 930  E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +          K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +  
Sbjct: 943  LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|299135003|ref|ZP_07028194.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2]
 gi|298589980|gb|EFI50184.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2]
          Length = 1135

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 525/1012 (51%), Positives = 697/1012 (68%), Gaps = 12/1012 (1%)

Query: 28   SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTN 87
             +  + +   AD QPA+A+TD +N+F ALEFS+K    GIQPIIGC L +D  D      
Sbjct: 2    KIPKLAELAKADHQPALALTDRDNMFGALEFSEKLAGVGIQPIIGCALAVDFGDVDPNAR 61

Query: 88   QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIML 147
              +   P    IV+L ++ EGY+ L+ L SR +L   G+Q   I   WL++  + GLI L
Sbjct: 62   NAQALGPA--RIVMLAASQEGYRSLMRLNSRAFLDMPGQQIPHIKAEWLKDDTS-GLIAL 118

Query: 148  TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYT 206
            TGG  GP+ +A      ++A +R+     LFGDRLY+ LQRH    +R  ES ++ +AY 
Sbjct: 119  TGGPEGPVSQALTAEQPELALQRVEKLVGLFGDRLYIELQRHGLDSERRVESALIDIAYG 178

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
              LPLVATN   F + +DYE+HD L+ +A   ++++ +R  +TPDH  K R+EM  +F+D
Sbjct: 179  KGLPLVATNEPYFATADDYESHDALLCIAGGRLIAETERAHLTPDHRFKTRAEMAVLFAD 238

Query: 267  LPEALENTVEIARRCSFILQVHAPILPRFIEK--ECDDIQKEEENELRNKAVAGLEVRLA 324
            LPEAL +TVEIA+RCSF  +   PILP F       +D    E  EL+ +A  GL  R+ 
Sbjct: 239  LPEALASTVEIAQRCSFRPKTRKPILPHFTVGSGHHEDPSAAEAAELQRQAQEGLAHRIE 298

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +  +A+G   +DY  RL FEL+VI RMK+ GYFLIV+DFI+WAK   IPVGPGRGSGAGS
Sbjct: 299  KHGLAEGQTEEDYYNRLAFELDVIKRMKYPGYFLIVSDFIKWAKAQGIPVGPGRGSGAGS 358

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            + AYALTITD+DPLRF LLFERFLNP+R+SMPDFDIDFCQDRR EVI YVQ +YG ++V 
Sbjct: 359  LVAYALTITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQDRRGEVIHYVQERYGRDQVG 418

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQAIADDSRFREARL 503
            QIITFG+LQA+  LRDVGR LQMPY QVD+L KL+P +PA PV+   AIA + + +  R 
Sbjct: 419  QIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPAAPVTLAAAIAGEPKLQAFRD 478

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWI 563
             DP V R  +I+Q+LEGL RHASTHAAGIVIGDRPLS+LVPMYRD +SD+PVTQFNMKW+
Sbjct: 479  EDPVVARAFDIAQRLEGLTRHASTHAAGIVIGDRPLSELVPMYRDPKSDMPVTQFNMKWV 538

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
            E AGL+KFDFLGLKTLT+L  ++  L QR V VDL+ +P DD ETY +LT    +G+FQ+
Sbjct: 539  EPAGLVKFDFLGLKTLTVLDVAVKLLKQRNVHVDLAHLPLDDKETYEMLTRGDVVGVFQV 598

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES GMR+AL  M+PD  EDIIALV+LYRPGP+ NI  Y  RK+G E+   +HP+++P+LK
Sbjct: 599  ESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCARKHGDEEPEYLHPVLEPILK 658

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET GVIIYQEQVMQIAQ+++GYSL EAD+LRRAMGKKI+ EM+KQ+ RF+SG+ ++ I+K
Sbjct: 659  ETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMGKKIRAEMEKQRVRFVSGSVEHSITK 718

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
              A  IFELLAKFADYGFNKSHAAAYA++SYQTA+MK HYPVEF+AASMTL+  N +K+ 
Sbjct: 719  GQAEQIFELLAKFADYGFNKSHAAAYALVSYQTAFMKAHYPVEFIAASMTLDTGNTDKLS 778

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPF 862
            +F  +A++  I++ PPS+N     F VG N I+YSLAA+KGVGT     I+EA  +  PF
Sbjct: 779  EFRAEAQRLGIKVEPPSINRSEGTFTVGGNTIFYSLAALKGVGTHAVDMIVEARKNGGPF 838

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             SL DF +RV  + +N+RVLESL  AGA D F  +R  +    D I    Q      T  
Sbjct: 839  TSLADFAARVPPRAINKRVLESLAAAGAFDEFNPNRAAVFAGADAILAACQRSHDAVTLG 898

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
              ++F  + G  +  + L        + R + E   +GF+ SGHPLD Y+ +L+++ ++ 
Sbjct: 899  QSDMFGSQSG--APTLILPNVEPWLPAERLQREYGAVGFFLSGHPLDDYRVVLQRLNVQS 956

Query: 983  YEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + E    ++      ++AA VVS+ +++T+ G+++G +  S+P   +EA  F
Sbjct: 957  WAEFSNAVKNGRTAGKVAATVVSRMERRTKTGNKMGIIGLSDPTGHFEAVLF 1008


>gi|110636521|ref|YP_676728.1| DNA polymerase III subunit alpha [Cytophaga hutchinsonii ATCC 33406]
 gi|110279202|gb|ABG57388.1| DNA polymerase III, alpha subunit [Cytophaga hutchinsonii ATCC 33406]
          Length = 1194

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/1075 (31%), Positives = 551/1075 (51%), Gaps = 61/1075 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL VHS +SLL+GA S+  ++ K   ++  A+A+TD  N+    +F  +A    I+
Sbjct: 2    PDFAHLHVHSQFSLLDGAASIKGLVGKAVKNEMKALALTDHGNMHGIFQFVAEAVKNNIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+GC+  + ++D  K  N  K         +LL    EGY+ LI+L S  Y+  Q  + 
Sbjct: 62   PIVGCEFYL-VEDRFKK-NFTKDNKDVRYHQLLLAKNPEGYKNLIKLCSLGYIEGQYGKY 119

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    + +   +GLI  T      + R       +  EK    +  LFG+  YV LQR
Sbjct: 120  PRIDKELILQYH-KGLIATTCCLGAEVPRTILAKGEEAGEKAFKWWLDLFGEDYYVELQR 178

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++      +++LA  +++P++A+N+S ++ ++D  AHD+L+ +      S      
Sbjct: 179  HDIKEQNIVNEVLIKLARKYQVPIIASNDSHYVDQKDSNAHDILLCINTGEKQSTPTMKD 238

Query: 248  VTPDHYLKNR--------SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE-- 297
             + D  +                   ++     +  E       I+     +  +     
Sbjct: 239  FSDDESMMKGRRFAFANDQFYFKTKEEMSTLFSDIPEAIDNTMQIVDKVEILKLKQDILL 298

Query: 298  --KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
               E      +++N L++    G   R             + ++RLDFEL+ I  M F+G
Sbjct: 299  PNYEIPSTFLDQDNYLQHLTYEGARNRYVD-------VTPEIKERLDFELHTIRTMGFAG 351

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV DFI   ++  + +GPGRGS AGS  AY + IT+IDP++++LLFERFLNPDR SM
Sbjct: 352  YFLIVQDFINKGREIGVLIGPGRGSAAGSAVAYCIGITNIDPIKYNLLFERFLNPDRKSM 411

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D DF  + R +VI YV  KYG ++VAQI+T+G++ AK +++DV R L +P  + + L
Sbjct: 412  PDIDTDFDDEGRQKVIDYVVEKYGKKQVAQIVTYGTMAAKMSIKDVARVLDLPLQESNAL 471

Query: 476  CKLIPNDPAHPVSLQA-------------------------IADDSRFR-EARLADPSVD 509
             KL+P+ P   ++                            I +  + R           
Sbjct: 472  AKLVPDKPGIELNWVMKGPMKASDKKNEKDKTLTEELTPEDIENVKKLREMLDDEGTLAS 531

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
             +L+ +  LEG  R    HAAGI+I  + L  ++P++    S+L VTQF+ K IE AG+I
Sbjct: 532  DVLKEALILEGSVRGTGIHAAGIIIAPKDLYDIIPVFTAKDSELLVTQFDGKVIEDAGVI 591

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K DFLGLKTLT+++ +L  + +   +K+D+  IP DD +T+ L     T   FQ ES+GM
Sbjct: 592  KMDFLGLKTLTIIRDALKMIEENHGIKIDIDYIPLDDAKTFELYQKGETNATFQFESAGM 651

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            ++ L  ++PD  ED+IA+ +LYRPGPI+ I  +  RK GKE+IV   P ++  L +T G+
Sbjct: 652  QKHLINLKPDKFEDLIAMNALYRPGPIEYIPKFIQRKLGKEEIVYDLPEMEEYLGDTYGI 711

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
             +YQEQVM ++Q L+G++  +ADVLR+AMGKK +  +DK K +FI GA   G+   +   
Sbjct: 712  TVYQEQVMLLSQKLAGFTKGDADVLRKAMGKKDRATLDKMKGKFIEGAVAKGLDPKVCEK 771

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++     FA Y FNKSH+  YA ++YQT ++K +YP E++A+ +T  + N +KI  F ++
Sbjct: 772  VWTDWEAFAQYAFNKSHSTCYAFVAYQTGYLKANYPSEYMASVLTHNLSNFDKISFFMEE 831

Query: 809  ARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLE 866
             ++  + ++ P VN     F V  + +I + + AIKGVG    + I++    + PF    
Sbjct: 832  CQRMGMAVLGPDVNESSYQFSVNSNGQIRFGMGAIKGVGEGPVQAIVDERKANGPFKDFF 891

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS--------LDNIQKYAQWVEK 917
            DF SRV+ + ++++  ESL  AGALD F    R Q            L+   +Y    + 
Sbjct: 892  DFVSRVNLRAVSKKTFESLALAGALDYFTELHRAQYFNVAERETITFLEKAIRYGNAFQT 951

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
               +   ++F            +       +  + + E+ ++GFY SGHPLD +K  +  
Sbjct: 952  EDDSNQSSLFGDSSSAKPAPPKITPCEEWGNIEKLKKEKEIVGFYISGHPLDQFKLEIDN 1011

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                  E  +++ +G ++ +A +V     ++++ G      T  + +   +   F
Sbjct: 1012 FCNCPLENVMSSPQGKDLTVAGIVTKVNVRQSKNGKPFVLFTIEDYSGSLDLALF 1066


>gi|297588670|ref|ZP_06947313.1| DNA-directed DNA polymerase III alpha subunit [Finegoldia magna ATCC
            53516]
 gi|297574043|gb|EFH92764.1| DNA-directed DNA polymerase III alpha subunit [Finegoldia magna ATCC
            53516]
          Length = 1161

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1050 (35%), Positives = 585/1050 (55%), Gaps = 44/1050 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G   +  +LDK+   Q  +IAITD  ++F  ++F ++     I+P
Sbjct: 4    TFTHLHVHTEYSLLDGFSPIEKLLDKVEELQMKSIAITDHGSMFGTVKFYKECKKRNIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++    +D+     + K        +VLL     GY  L+++VS  Y ++      
Sbjct: 64   IIGCEIYTTNKDHKIKNPENKF----YNHLVLLAKNQTGYSNLMKIVSLGY-VEGFYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    L++  +EG+I L+    G +  +        A+      K ++G+  Y+ LQ H
Sbjct: 119  RVDKDTLRKY-SEGIIALSACLKGEVQESLIRYGYDKAKDVAKELKDIYGEDFYLELQNH 177

Query: 190  RGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +       + ++A   ++ LV TN+  ++ +EDY+ H++L+ +     + ++++   
Sbjct: 178  SSREDMVVMENIPKIANELDIGLVCTNDVHYIEKEDYKIHNILICLQTGKTIEEENKMSY 237

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + +L++  +M  +F D PEA+ENT +IA  C+  L+     LP F   +        
Sbjct: 238  IPGEFFLRSEEQMRDLFKDYPEAIENTKKIAEMCNVELEFGNLHLPYFAIPDGF----TN 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + L+     GLE R A          ++ ++R ++EL+VI +M +  YFLIV DFI++A
Sbjct: 294  SSYLKKLVFDGLEKRFAND-----DRLEEAKERCEYELSVIEKMGYVDYFLIVWDFIRFA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K  +IPVGPGRGS AGS+ +Y L ITDI+PL ++L+FERFLNP+R+SMPD DIDFC +RR
Sbjct: 349  KSQDIPVGPGRGSAAGSIISYCLEITDINPLDYNLIFERFLNPERVSMPDIDIDFCYERR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI YV NKYG ++VAQI+TFG++ A+ A+RDVGR L M +  VD   K +PN     +
Sbjct: 409  EEVIDYVVNKYGEDKVAQIVTFGTMAARNAIRDVGRVLAMDFKTVDDTAKKVPNLLNINI 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +++     FR+A   +  V +L+++++++EG+ RH STHAAG+VI   P+ + VP+  
Sbjct: 469  D-KSLEISPEFRKAYEENRDVKKLVDVARRVEGMPRHTSTHAAGVVISKLPIMEYVPL-- 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
             +  D  +TQFNM  +E+ GL+K DFLGL+TLT++   + ++ + + + V    +  +D 
Sbjct: 526  AINKDAVITQFNMTELEELGLLKMDFLGLRTLTVISDCMKYIKKNKDIDVSFEDMDENDP 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +   + T   TLGIFQ ES GMR  L+ ++P   +D+IA  +L+RPGP++ I  Y + K+
Sbjct: 586  KVLSMFTVAQTLGIFQFESQGMRNFLKELKPTKFDDLIAANALFRPGPMNEIPTYIHNKH 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +E +  + PL++ +LK T G I+YQEQVMQI Q ++G+SL EAD LRRAM KK  + M+
Sbjct: 646  NEEDVEYLSPLLEDILKPTYGTIVYQEQVMQIVQKIAGFSLGEADNLRRAMSKKKMKVME 705

Query: 727  KQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
              ++ F            I GA + G+ + +A  I++L+  FA Y FNKSH+AAY++++ 
Sbjct: 706  DGRKEFIFGKEDEDGNILIEGAIRRGVEEDVANKIYDLMIDFAKYAFNKSHSAAYSLVAM 765

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            +TAW+K +YPVEFLAA ++  M N  ++  + ++AR+ +I+I  P +N     F V DN 
Sbjct: 766  RTAWLKYYYPVEFLAALISSVMGNTSQLSLYIEEARRLDIKIEAPDINYSLDKFDVKDNS 825

Query: 835  IYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGA 890
            I Y L AIK VGT      I+  + +  F S  DF  R+   D   +N+R +ESL+ AGA
Sbjct: 826  IIYGLKAIKNVGTNLIDQTIISRNENGKFKSFRDFVERIYAKDKSAINKRSIESLIKAGA 885

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSS 949
                G +R  L+    +I    Q   KN      N+F   E     D+    +    + S
Sbjct: 886  FTSLGETRATLMLQYQSIIDSVQSGLKNNVPGQSNLFDMFESNADDDRDDFTRREEFDKS 945

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI------RGNNIRLAAMVVS 1003
                 E+ VLG Y S HPL  Y  I+ K       +            G  +++  +V S
Sbjct: 946  ELLRMEKEVLGIYLSDHPLRAYSNIIGKYSNFSTGDLEDDAYNEKNFDGKRVKVVGIVES 1005

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +K T+    + +V F +     E   FP
Sbjct: 1006 INKKFTKNQKIMEFVKFEDLYGTMELIVFP 1035


>gi|292489212|ref|YP_003532099.1| DNA polymerase III subunit alpha [Erwinia amylovora CFBP1430]
 gi|292898554|ref|YP_003537923.1| DNA polymerase III subunit alpha [Erwinia amylovora ATCC 49946]
 gi|291198402|emb|CBJ45509.1| DNA polymerase III alpha subunit [Erwinia amylovora ATCC 49946]
 gi|291554646|emb|CBA22332.1| DNA polymerase III alpha subunit [Erwinia amylovora CFBP1430]
          Length = 1160

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1049 (39%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL+VHS YS+++G    + ++   A+   PAI ITD  NL   ++F   A  
Sbjct: 1    MAE-PRFIHLRVHSDYSMIDGLAKTSPLVKYAASIGMPAIGITDFTNLCGLVKFYGTAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG   ++            +     +  I +L +  EGYQ L  L+SR Y    
Sbjct: 60   QGMKPIIGADFNVS----------SEAMGDELTQITVLAADNEGYQNLTLLISRAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E   +GLI+L+GG  G + +     +     + L  +++ F DR Y+
Sbjct: 110  GPAGPTIDRDWLAE-HQQGLILLSGGRRGDVGKMLLRGNHTQVRECLSFYQQHFPDRYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA    +P+VATN   FL+E D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEEAYLHAAVELAVAQGVPVVATNEVCFLAESDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  YL++  EM  +FSD+PEALEN+VEIARRC+  +++       +   +   
Sbjct: 229  KRPRHYSPQQYLRSEEEMCELFSDIPEALENSVEIARRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L  ++  GLE RL      +   A+   DY QRLD ELNVI +M F GYFLI
Sbjct: 284  GEMTTEDFLVVESKKGLEERLEFLFPDEKVRAERRADYDQRLDIELNVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDLVIEHVAEMYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D   D PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  +       
Sbjct: 523  TDFAPLYCDENGDHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINAKRAKSGEA 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     I   H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM +Q+  F  GA   GI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKNPVEMARQRGGFEDGAKARGIDGELAIKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECLRMGLKVLPPDINSGLYQ 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I+EA  +   F  L D C+R D+KK+NRR+LE L
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIEARNEGGYFRELFDLCARTDTKKMNRRMLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ +L +  K A    K       ++F    +     + +     
Sbjct: 883  IMSGAFDRLGPHRAALMSALPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYSDVK 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 ++ + E+  LG Y +GHP++ Y   + +  G +  ++   T RG     A +VV+
Sbjct: 943  PWPEQIQLDGERETLGLYLTGHPINQYLKEIERYVGGQRLKDMHPTERGKMTTAAGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|148239403|ref|YP_001224790.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 7803]
 gi|147847942|emb|CAK23493.1| DNA polymerase III alpha subunit [Synechococcus sp. WH 7803]
          Length = 1173

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1051 (37%), Positives = 582/1051 (55%), Gaps = 35/1051 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++  A   PA+A+TD   ++ A+E  +    AGI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPQMVERAKALGMPALALTDHGVMYGAVELLKLCKGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          +          +V+L   A GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPQPK----KERRYHLVVLAKNAVGYRNLVKLTSISHLRGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    LQ+  +EGLI+ T    G I +A       VA      ++++FGD  Y+ 
Sbjct: 118  FSRACIDKHLLQQ-HSEGLIVATACLGGEIPQAIMRERPDVARDVARWYQEVFGDDFYLE 176

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V++A    + LVATN++ +L+  D EAHD L+ V    ++S + 
Sbjct: 177  IQDHGSPEDRIVNVEIVKIAQELGIQLVATNDAHYLTSNDVEAHDALLCVLTGKLISDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R R T   YLK+  EM  +F+D   P  ++  +      +  ++ +  +    + +    
Sbjct: 237  RLRYTGTEYLKSEEEMGRLFADHLDPAVVQQAIANTVSVAEKVEDYDILGRYQMPRFPIP 296

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                    LR     GL  RL  G  A G     Y  RL  EL ++ +M F  YFL+V D
Sbjct: 297  EGHTPVTYLREVTEQGLRDRL--GLSADGTIEATYADRLSHELQIMEQMGFPTYFLVVWD 354

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I++A++  IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 355  YIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDIDTDF 414

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV  +YG E+VAQIITF  + +KA L+DV R L +PY   DRL KLIP  
Sbjct: 415  CIERRGEVIDYVTRRYGEEKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 474

Query: 483  PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
               P  L+A+    + +  F+E    DP V R ++++ ++EG  +    HAAG+VI   P
Sbjct: 475  RGKPAKLKAMIGDESPNPDFKEKYDKDPVVQRWVDMAMRIEGTNKTFGVHAAGVVIAADP 534

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597
            L +LVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +AQ    ++D
Sbjct: 535  LDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVAQSSGERID 593

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               +P  D  T+ LL      GIFQLES+GMRQ +  ++P  +EDI ++++LYRPGP+D 
Sbjct: 594  PDQLPPQDQGTFDLLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILALYRPGPLDA 653

Query: 658  --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  + NRK+G+E I   H  ++P+L ET G+++YQEQ+M+IAQ L+GYSL EAD+LRR
Sbjct: 654  GLIPKFINRKHGREAIDFAHSTLEPILSETYGIMVYQEQIMRIAQDLAGYSLGEADLLRR 713

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK   EM K +  F+ GAS+ G+ + +A  +F+ +  FA+Y FNKSH+ AY  ++YQ
Sbjct: 714  AMGKKKVSEMQKHRGIFVKGASERGVDEKVADELFDQMVLFAEYCFNKSHSTAYGAVTYQ 773

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYPV ++AA +T+     +K++++  +     I++MPP VN    DF   D RI
Sbjct: 774  TAYLKAHYPVAYMAALLTVNAGASDKVQRYISNCNAMGIEVMPPDVNASGTDFTPRDQRI 833

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L+A++ +G    R ++ +  AD PF+SL D C RV S  +NRR LESL+  GA+D  
Sbjct: 834  LFGLSAVRNLGDGAIRALIRSREADGPFESLADLCDRVPSSVINRRSLESLIHCGAMDAL 893

Query: 895  GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE----------KGTFSDKITLEK 942
                +R QL+  LD +  +A    ++R +   N+F                 S       
Sbjct: 894  EPEANRAQLIADLDLLLDWATSRARDRASGQGNLFDLMAGAAGGEADAPTDLSLAPKAAP 953

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                + S + + E+ ++GFY S HPL    P  R +   G            +   AMV 
Sbjct: 954  VKDYHPSEKLKLEKDLVGFYLSDHPLKQLTPPARLLAPIGLGGLEEQADKAKVSAIAMVS 1013

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +Q  TRKG R+  +   +     EA  FP
Sbjct: 1014 EMRQVTTRKGDRMAVLQLEDLTGSCEAVVFP 1044


>gi|254477258|ref|ZP_05090644.1| DNA polymerase III, alpha subunit subfamily, putative [Ruegeria sp.
            R11]
 gi|214031501|gb|EEB72336.1| DNA polymerase III, alpha subunit subfamily, putative [Ruegeria sp.
            R11]
          Length = 1170

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 492/1061 (46%), Positives = 683/1061 (64%), Gaps = 51/1061 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++P F+HL+ H+ YSLLEGA+ L  + D     + PAIA+TD+NNLF+ALEFS  A  
Sbjct: 1    MTQNPRFIHLRTHTEYSLLEGAVRLKKLPDLCKKYEMPAIAVTDSNNLFAALEFSVSASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+D+   D       G+ P P  P +VLL  +  GY+ L++L S +Y+ + 
Sbjct: 61   AGVQPIMGCQVDLRFTD----PAPGERPKPPAP-LVLLAQSETGYEHLMKLNSCLYMREG 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              +   + L  L +   + +I L+GG  GP+ R         AE  +   K +F DRLYV
Sbjct: 116  S-ELAHVTLEELAQYAGD-VICLSGGPDGPVGRLLQMGQRSAAEALMQRLKAIFPDRLYV 173

Query: 185  NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       ++  E   +++AY  +LPLVATN+  F + E YEAHD ++ +A   
Sbjct: 174  ELQRHPGEHGQPEAEQLTERGHIEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAEGA 233

Query: 239  VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+T  HY K++ EMV++F+DLPEALENTVEIA+RC+F+            +
Sbjct: 234  YVDQVEPRRRLTAQHYFKSQEEMVALFADLPEALENTVEIAKRCAFMAY--------RRD 285

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    +E  ELR  A  GL+ RLA   I      ++Y++RLDFEL +I  M F GYF
Sbjct: 286  PILPKFADDEVAELRRIANEGLQQRLA--VIPHAVSVEEYQERLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S+  ++ ++ R RE    +  VDRLL+   ++EGL R A THAAG+VIGD
Sbjct: 464  LIPVEGVKPMSIADSLKEEPRLREEAENEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL  LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q G  +
Sbjct: 524  RPLDALVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDL 583

Query: 597  D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                               ++ IP DD  TY L +   T+ +FQ+ES+GM  AL+ M+P 
Sbjct: 584  HIAADGTQLYDPPEGAENQINAIPLDDKVTYDLYSRAKTVAVFQVESTGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI VY   KNG+ +I S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPVYCEVKNGQREITSVHPLIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++ Y+L  AD+LRRAMGKKIKE MD ++ +F  GA++NG+    A  +F+LL KFA+
Sbjct: 704  AQVMANYTLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVPAKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQT W+K ++PVEF+A  M  ++   +K+  + ++ ++   +  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLGLPYV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS----ADKPFDSLEDFCSRVD 873
            PP VN     F V    + Y+L A+K VG    R +  A      DKPF +L DF  RVD
Sbjct: 824  PPCVNRSEATFNVVKGELVYALGALKNVGVEAMRLVTAARRESGQDKPFATLFDFARRVD 883

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             KK+ +R LE +V AGA D    +R ++ +SL  +  Y+  +++ + +   ++F  E G 
Sbjct: 884  LKKVGKRPLEMMVRAGAFDQLDSNRRRVFESLGALVDYSAAIQEQKNSNQVSLFG-EAGE 942

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
               +  L        + R   E + +GFY SGHPLD Y P L++  +   +E  A     
Sbjct: 943  DLPEPRLPNVPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVTAKAERG 1002

Query: 994  N--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                ++A +V  +Q++K+ +G+R  +   S+    YE   F
Sbjct: 1003 PFMAKMAGVVAGRQERKSARGNRFAFAQLSDTLGAYEVTLF 1043


>gi|126696251|ref|YP_001091137.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT
            9301]
 gi|126543294|gb|ABO17536.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT
            9301]
          Length = 1165

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1044 (36%), Positives = 596/1044 (57%), Gaps = 28/1044 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  ++ I+D+       +IA+TD   ++  L+  +K    GI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQISKIVDRACDLGMESIALTDHGVMYGVLDLVKKCKEKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          +          +V+L     GY+ L++L +  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPQPK----KEKRYHLVVLAKNYTGYKNLVKLTTISHLNGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I  S L +  ++GLI+ T    G I +A       VAE   L +KKLF D  Y+ 
Sbjct: 118  FSRPCIDKSLLSKY-SDGLIISTACLGGEIPQAILKGRLDVAEDIALWYKKLFADDFYLE 176

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    +++++   H++ ++ATN++ +LS  D EAHD L+ V    ++S + 
Sbjct: 177  IQDHGSIEDRIVNVELIKIGKKHQIKVIATNDAHYLSNMDVEAHDALLCVLTGKLISDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R R T   Y+K+ +EM+ +F D  +  ++   V      S  ++V        + K   +
Sbjct: 237  RLRYTGTEYIKSENEMLELFKDHIDDESIIEAVNNTVEISQKVEVFDLFGNYRMPKFPLN 296

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
               +  + L   +  GL  RL +  +      ++Y++RL  EL +I  M F  YFL+V D
Sbjct: 297  EDTDSFSFLTQLSNKGLLKRLKKNDLT--EVDENYKKRLSSELKIIKDMGFPDYFLVVWD 354

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I++A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP R SMPD D DF
Sbjct: 355  YIKFARDNSIPVGPGRGSAAGSLVAYALQITNIDPVEHGLLFERFLNPARKSMPDIDTDF 414

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C DRR+EVI YV N+YG ++VAQIITF  + +KA L+DV R L +PY + D+L KLIP  
Sbjct: 415  CIDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGEADKLAKLIPVV 474

Query: 483  PAHPVSLQAIAD----DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
               P  L  + D       FR+  + D  V + ++++ ++EG  +    HAAG+VI   P
Sbjct: 475  RGKPHKLNEMIDKNSPSQEFRDKYINDNRVKKWVDLALRIEGTNKTYGVHAAGVVIASDP 534

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            L +LVP+ R+      +TQ++M  IE  GL+K DFLGLK LT+++K++  + Q  G K++
Sbjct: 535  LDELVPLQRN-NEGQIITQYSMDDIESLGLLKMDFLGLKNLTMIEKTVSLINQSTGRKIN 593

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  +P +D +T+ L+      GIFQLESSGM+Q ++  +P+ +EDI ++++LYRPGP+D 
Sbjct: 594  IDELPQNDGKTFELIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILALYRPGPLDA 653

Query: 658  --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  + NRKNG EKI   HP I  +L ET G+++YQEQ+M+IAQ L+GYSL +AD+LRR
Sbjct: 654  GLIPKFINRKNGNEKIDFPHPFIKSILTETYGIMVYQEQIMKIAQDLAGYSLGDADLLRR 713

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK   EM K +  F+ G+ K G+++ +A ++F+ +  FA+Y FNKSH+ AY  ++YQ
Sbjct: 714  AMGKKKVSEMVKHRNIFVDGSRKKGVNEKLANDLFDQMVLFAEYCFNKSHSTAYGAVTYQ 773

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K H+PV ++AA +++   + +K++++  +     I+++ PS+N   VDF + +N+I
Sbjct: 774  TAFLKAHFPVAYMAALLSVNSGSSDKMQRYISNCYSMGIEVISPSINFSGVDFTIKNNQI 833

Query: 836  YYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L+AIK +G +  R+I+E       F SL D C R+ S  LN+R LESL+  GALD F
Sbjct: 834  LFGLSAIKNLGDSAIRNIIENRNSFGTFKSLSDLCDRLPSNILNKRSLESLIHCGALDEF 893

Query: 895  --GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---AHEKGTFSDKITLEKFSVENSS 949
                +R QLL  L+++ ++A    ++R +   N+F               L K    +  
Sbjct: 894  SKDNNRAQLLSDLEHVVEWASSRNRDRLSGQGNLFDSKDEFSNVAFSDSQLAKVDDYSLI 953

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
             + + E+++LGFY S HPL       + +      +         + L  M+   +Q  T
Sbjct: 954  EKLKLEKQLLGFYLSDHPLKHLTKPAKLVSPISISQLEEIKDRTKVSLVGMIPDLKQITT 1013

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
            RKG R+  V   + +   EA  FP
Sbjct: 1014 RKGDRMAIVQLEDLSGSCEAIVFP 1037


>gi|330959213|gb|EGH59473.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. maculicola
            str. ES4326]
          Length = 1173

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1065 (38%), Positives = 600/1065 (56%), Gaps = 57/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  
Sbjct: 1    MP--ASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PI G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q
Sbjct: 59   SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   W+ +  +EG+I L+    G I  A    +   A+  L  + ++F DR Y+
Sbjct: 109  RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADDLLREWLQVFPDRFYI 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +   
Sbjct: 168  EVQRTNRTNDEEHLHAAVALAQRHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDP 227

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R    +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   
Sbjct: 228  RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287

Query: 303  IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            I    +   R  +  GLE R       +         Q Y  RL+FEL++I +M F GYF
Sbjct: 288  I----DEYFRKVSFDGLEERLSVLLPKETTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 344  LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K
Sbjct: 404  FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP +    +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI   
Sbjct: 464  MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPT 522

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             L+   P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV+
Sbjct: 523  KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582

Query: 598  -----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                 ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RP
Sbjct: 583  EAPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642

Query: 653  GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V +               +   +  + P+L  T G+I+YQEQVMQIAQ+++GY
Sbjct: 643  GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH
Sbjct: 703  TLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSH 762

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAY ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT  
Sbjct: 763  SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822

Query: 826  VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F V  D RI Y L AIKGVG      I +A    PF  L DFC+RVD K++N+R L+ 
Sbjct: 823  FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRVNKRTLDG 882

Query: 885  LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+ +GALD  G                +R  LL +L+   + A+   ++R + H ++F  
Sbjct: 883  LIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGG 942

Query: 930  E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +          K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +  
Sbjct: 943  LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|152999992|ref|YP_001365673.1| DNA polymerase III subunit alpha [Shewanella baltica OS185]
 gi|151364610|gb|ABS07610.1| DNA polymerase III, alpha subunit [Shewanella baltica OS185]
          Length = 1157

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1047 (39%), Positives = 595/1047 (56%), Gaps = 37/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NN    ++F      
Sbjct: 1    MSD-PRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q       + ++ ++     GYQ L +++S+ YL  Q
Sbjct: 60   AGIKPIIGADFWM----------QVPGFEGELCALTIIAMNNVGYQNLTQIISQAYLRGQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                V I   WL     EG+++L+G   G + +A    +S   E     ++  F DR ++
Sbjct: 110  VAGRVVIDQEWLLTY-NEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFL 168

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R     V LA    +P+VATN  +FL  ED++AH++ +A+     ++  
Sbjct: 169  ELIRTGRPDEERYLHMAVILAQDKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   YL++  EM  +F+D+P AL N+VEIA+RC+  ++++              
Sbjct: 229  RRPKKYSEQQYLRSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYF-----LPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L + +  GLE RL          A+   +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMSIEDFLVDCSRKGLEERLGFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   +   +E+   D  V  L+++ +KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPEPGMTL-AKAFEVEPALQESYDGDEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +          
Sbjct: 523  TDFAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVKNGRK 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             + +  I   D   + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PIRIEAISLTDPACFRLLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP VN     
Sbjct: 763  AYALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFK 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+
Sbjct: 823  FTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLI 882

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945
             AGALD  G  R  ++ +L    + A    K       ++F        D K    + + 
Sbjct: 883  CAGALDNLGPHRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTP 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                +  E E+  LG Y +GHP++ Y   L+       ++   T RG   + A +VV+ +
Sbjct: 943  WPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTAKAAGLVVATR 1002

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++GS++G +T  + +   E   F
Sbjct: 1003 VMLTKRGSKMGLLTLDDKSARLEIMLF 1029


>gi|113460344|ref|YP_718405.1| DNA polymerase III subunit alpha [Haemophilus somnus 129PT]
 gi|112822387|gb|ABI24476.1| DNA polymerase III, alpha subunit [Haemophilus somnus 129PT]
          Length = 1158

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1046 (39%), Positives = 595/1046 (56%), Gaps = 38/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S++ G   +  ++      +  A+A+TD  N    + F  +A ++G
Sbjct: 2    SQPRFVHLRVHSDFSMINGITKVKPLIKACVQHEMVAMALTDFTNFCGLVRFYGEAQSSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG  + +          +       +  + LL    EGY  +  L+S+ Y      
Sbjct: 62   VKPIIGADVLV----------KSDLLGDELFELTLLAKNNEGYHNITLLLSKAY-ERGYY 110

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  SWL E   EG+I+L+GG +G + +    N+S   E  +  +++ F D  Y++L
Sbjct: 111  NLPYIDQSWLAE-HHEGIIILSGGRNGDVGKKLLKNNSADVETAVAFYQEYFPDHFYLSL 169

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R     + LA   +LPLVATN+  FLS ED+EAH++ +A+     +    R
Sbjct: 170  SRTGRSDEDRYIQSALILAQQKQLPLVATNDVCFLSPEDFEAHEIRVAIHDGYTLDDPKR 229

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   Y ++  EM  +F+D+P ALENTV IA+RC+  +++           +     
Sbjct: 230  PKLYSSQQYFRSEQEMCELFADIPTALENTVLIAQRCNVTIRLGTYF-----LPKFPTGD 284

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +    ++Y  RL  EL+VI +M F GYFLIV 
Sbjct: 285  LSPEDFLIQKSKEGLEERLQTLFPDPQVRSEKRKEYDDRLQTELDVINKMGFPGYFLIVM 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNPDR+SMPDFD+D
Sbjct: 345  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPDRVSMPDFDVD 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 405  FCMDKRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLIPA 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   ++ +A   + R  E    D  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 465  DPGMTLT-KAFEVEPRLSEIYNNDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSLITD 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R        V
Sbjct: 524  FSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARLVKEGKSAV 583

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+S IP +D ++++LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP++
Sbjct: 584  DISTIPLNDPDSFNLLKKAETTAVFQLESRGMKDLIKKLQPDCFEDIIALVALFRPGPLE 643

Query: 657  NIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N               +   H  + P+L+ T GVI+YQEQVMQIAQ+L+GYSL  
Sbjct: 644  SGMVQNFIDRKHGVEPVSYPDVKYQHESLKPILEPTYGVIVYQEQVMQIAQVLAGYSLGG 703

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM  Q++ F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 704  ADLLRRAMGKKKPEEMAAQRDIFEKGAIAKGIDGDLAMKIFDLVEKFAGYGFNKSHSAAY 763

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT EMDN +KI  F  +  +  + I+PP +NT    F 
Sbjct: 764  ALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVSFYDECLRMGLTIVPPDINTGKHHFS 823

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+ A      F  L D C+RVD KK+NRR  E+L+ 
Sbjct: 824  VNDNGEIVYGIGAIKGVGEVPINAIVSAREQGGIFKDLFDLCARVDLKKVNRRTFENLIK 883

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946
            +GA D  G  R  L Q+L++  K +    K+      ++F     +  D +         
Sbjct: 884  SGAFDKLGPHRAALAQNLEDALKASDQHAKDEAIGQVDMFGVLTSSHEDVETAYAHTPRW 943

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            +     + E+  LG Y S HP+  Y   L         E     RG    +  ++V+ + 
Sbjct: 944  SEKQILDGERETLGLYLSSHPITRYLKELSHYSSTRLNELSPNTRGKISTVCGLIVALRF 1003

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T+KG+R+G  T  + +   +   F
Sbjct: 1004 AVTKKGNRLGIATLDDRSGLLDITLF 1029


>gi|269792442|ref|YP_003317346.1| DNA polymerase III, alpha subunit [Thermanaerovibrio acidaminovorans
            DSM 6589]
 gi|269100077|gb|ACZ19064.1| DNA polymerase III, alpha subunit [Thermanaerovibrio acidaminovorans
            DSM 6589]
          Length = 1132

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1032 (37%), Positives = 599/1032 (58%), Gaps = 32/1032 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+GA+    ++D +A+    A+AITD   ++   EF +K  A GI+PI
Sbjct: 5    FVHLHVHSEYSLLDGAIRCGELVDTVASMGMGAVAITDHGVMYGCEEFYEKCVAKGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +D         +G+        +VL      GY+ LI+LVS     D      R
Sbjct: 65   IGCEVYVDPNGMDSRDGKGRNN-----HLVLWAEDQVGYKNLIKLVSIANT-DGFYYKPR 118

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
            +    L +  ++G+I  +   +G I +         A  R   ++ +FG+   ++ +  +
Sbjct: 119  VDHRVLSQ-HSKGIIASSACLAGEIPQLLMDGDFDGAVSRANLYRDIFGEGNFFIEIMYN 177

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +  ++    +++++LA    LPL+ATN++ +L  ED   HDVL+ V  ++ V   DR R 
Sbjct: 178  QLPEQAMANAELIRLAKRCSLPLIATNDAHYLRREDASWHDVLLCVQTNSTVDTPDRYRF 237

Query: 249  TPDHYL--KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              D +           +  ++PEAL NT+ +A RC+  LQ+   +LP F   E +     
Sbjct: 238  GSDDFYLRTPEEMWSLLGGEVPEALRNTLLVAERCNVELQLGHYMLPEFPLPEGE----T 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++ L   A  GL  R+ +         Q+YR RL++EL VI +M F GYF IVAD I  
Sbjct: 294  LDSHLEKMAREGLRARVGEP------IPQEYRDRLEYELGVIKQMGFPGYFCIVADIITA 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IP+GPGRGS AGS+ A+ L IT++DP+++ LLFERFLNP+R+SMPD D D    R
Sbjct: 348  AKSRGIPIGPGRGSAAGSLVAWCLGITELDPIKYKLLFERFLNPERISMPDIDTDVSDKR 407

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEV+ Y+  KYG +RV+QIITF  +++KAA+RDVGRAL MPY +VDR+ KL+P      
Sbjct: 408  RDEVLAYIVEKYGIDRVSQIITFDRMKSKAAIRDVGRALAMPYPEVDRVAKLVP--DGVK 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               +A+      +E   +DP V RL++ +  +EG+ RH S HAAG+VI   PL ++VP+ 
Sbjct: 466  SLKEALEKSPDLKEVHSSDPKVRRLVDTASHIEGIARHCSQHAAGVVITPVPLVEMVPVR 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDD 605
            +    +  VTQ++M+ +E  GL+K DFLGL+TL++++ +L    A RG+K+DL  IP DD
Sbjct: 526  KIG-ENQVVTQYSMEPLEHLGLVKMDFLGLRTLSVIEGALRNVEANRGLKIDLRAIPLDD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
             +T+ +L    TLG+FQLESSGM+  L  ++PDC ED+IA+++LYRPGP+ + +   Y  
Sbjct: 585  PKTFDMLQRADTLGVFQLESSGMQDLLRRLRPDCFEDLIAVLALYRPGPLGSGMVDDYIE 644

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G+  +   HP ++  LKET GVI+YQEQVMQ A  L+GY+L EAD+LRRAMGKK  +
Sbjct: 645  RKHGRSPVTYPHPCLEEALKETYGVILYQEQVMQCAAELAGYTLGEADLLRRAMGKKKAD 704

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M+KQ+ +F+ GA   G+   +A +IF  + KFA+YGFNKSH+AAYA+ISYQTA++K HY
Sbjct: 705  VMEKQRSKFVEGAKARGVEPKMAEDIFNSIEKFAEYGFNKSHSAAYALISYQTAYLKAHY 764

Query: 784  PVEF-LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
              EF  +   ++    ++ + ++ ++ R     ++PP +N    DF      I   L+A+
Sbjct: 765  GPEFLASYLSSIVGSRMDILGRYIKEVRNLGYSVLPPDINESQSDFVAVGEVIRLGLSAV 824

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
              VG +    I+ A ++ PF S  DF  RVD + +NR V+E+L+ AGA D    +R  LL
Sbjct: 825  AKVGDSAVDAILRARSEGPFRSFWDFLCRVDLRTVNRGVIENLIKAGAFDVLCPNRRMLL 884

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             +L+ + + AQ   +   +K  ++F  ++     +  ++     +   R E E+ VLG Y
Sbjct: 885  DNLEGLLEMAQ--RRCDPSKQVSLFDGDEEEEE-EPKMDVVDDVDIHQRLEWEREVLGLY 941

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL-AAMVVSKQQKKTRKGSRIGWVTFS 1021
             SGHP +  +  L    +    +  +    N   + A ++   +++ T++G  +G +   
Sbjct: 942  ISGHPFEQVEGELAPFLVCKISDLRSWRSSNVAPVTAGLLAGIRERYTKRGDPMGILEME 1001

Query: 1022 EPAKEYEANFFP 1033
            +   + EA  FP
Sbjct: 1002 DGDDKVEAVCFP 1013


>gi|330872712|gb|EGH06861.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv.
            morsprunorum str. M302280PT]
          Length = 1173

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1065 (38%), Positives = 600/1065 (56%), Gaps = 57/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL++H+ YSL++G + +  ++  + +   PA+A+TD NN+ S ++F + A  
Sbjct: 1    MP--ASFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PI G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q
Sbjct: 59   SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F DR Y+
Sbjct: 109  RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPAEADELLREWLAVFPDRFYI 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR +R  D       V LA  H  PLVATN+  F+++ D+EAH+  + +     +   
Sbjct: 168  EVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFINQTDFEAHETRVCIGEGRALDDP 227

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R    +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   
Sbjct: 228  RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287

Query: 303  IQKEEENELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            I    +   R  +  GLE                   Q Y  RL+FEL++I +M F GYF
Sbjct: 288  I----DEYFRKVSFDGLEERLAVLMPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 344  LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K
Sbjct: 404  FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP +    +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI   
Sbjct: 464  MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPT 522

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596
             L+   P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV 
Sbjct: 523  KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRERAKVD 582

Query: 597  ----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                D++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RP
Sbjct: 583  EAPLDIAFIPLDDLPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642

Query: 653  GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V +               +   +  + P+L  T G+I+YQEQVMQIAQ+++GY
Sbjct: 643  GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH
Sbjct: 703  TLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSH 762

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAY ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT  
Sbjct: 763  SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822

Query: 826  VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F V  D RI Y L AIKGVG      I +A    PF  L DFC+RVD K++N+R L+ 
Sbjct: 823  FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDG 882

Query: 885  LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+ +GALD  G                +R  LL +L+   + A+   ++  + H ++F  
Sbjct: 883  LIRSGALDRLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGG 942

Query: 930  E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +          K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +  
Sbjct: 943  LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|254525897|ref|ZP_05137949.1| putative DNA polymerase IIIalpha subunit subfamily [Prochlorococcus
            marinus str. MIT 9202]
 gi|221537321|gb|EEE39774.1| putative DNA polymerase IIIalpha subunit subfamily [Prochlorococcus
            marinus str. MIT 9202]
          Length = 1165

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1043 (36%), Positives = 597/1043 (57%), Gaps = 28/1043 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L  HS YSLL+GA  ++ I+D+ +     +IA+TD   ++  L+  +K     I+PI
Sbjct: 3    FVPLHNHSDYSLLDGASQISKIVDRASDLGMESIALTDHGVMYGVLDLVKKCKEKNIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ--- 127
            IG ++ +          +          +V+L     GY+ L++L +  +L     +   
Sbjct: 63   IGNEMYVINGSIDDPQPK----KEKRYHLVVLAKNYTGYKNLVKLTTISHLNGMRGRGIF 118

Query: 128  -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  S L +  ++GLI+ T    G I +A       VAE   + +KK+F D  Y+ +
Sbjct: 119  SRPCIDKSLLSKY-SDGLIVSTACLGGEIPQAILKGRLDVAEDIAIWYKKIFADDFYLEI 177

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    DR    +++++   H++ ++ATN++ +LS  D EAHD L+ V    ++S + R
Sbjct: 178  QDHGSIEDRIVNVELIKIGKKHQIKVIATNDAHYLSNMDVEAHDALLCVLTGKLISDEKR 237

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R T   Y+K+ +EM+ +F D  +  ++   V      S  ++V        + K   + 
Sbjct: 238  LRYTGTEYIKSENEMLELFKDHIDDVSINEAVNNTVEISQKVEVFDLFGNYRMPKFPLNE 297

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              +  + L   +  GL  RL +         + Y++RL  EL +I  M F  YFL+V D+
Sbjct: 298  DTDSFSLLTKLSNEGLLKRLKKNNFT--EVDESYKKRLSTELKIIKDMGFPDYFLVVWDY 355

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP R SMPD D DFC
Sbjct: 356  IKFARDNSIPVGPGRGSAAGSLVAYALQITNIDPVEHGLLFERFLNPARKSMPDIDTDFC 415

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRR+EVI YV N+YG ++VAQIITF  + +KA L+DV R L +PY + D+L KLIP   
Sbjct: 416  IDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGEADKLAKLIPVVR 475

Query: 484  AHPVSLQAIAD----DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
              P  L  + D       FR+  + D  V + ++++ ++EG  +    HAAG+VI   PL
Sbjct: 476  GKPYKLNEMIDKNSPSQEFRDKYINDNRVKKWVDLAMRIEGTNKTYGVHAAGVVIASDPL 535

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
             +LVP+ R+      +TQ++M  IE  GL+K DFLGLK LT++ K++  + Q  G  +++
Sbjct: 536  DELVPLQRN-NEGQIITQYSMDDIESLGLLKMDFLGLKNLTMIDKTISLINQSTGKIINI 594

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN- 657
              +P +D +T+ L+      GIFQLESSGM+Q ++  +P+ +EDI ++++LYRPGP+D  
Sbjct: 595  DDLPQNDSKTFELIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILALYRPGPLDAG 654

Query: 658  -IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             I  + NRKNG EK+   HP I  +L ET G+++YQEQ+M+IAQ L+GYSL +AD+LRRA
Sbjct: 655  LIPKFINRKNGNEKVDFPHPFIKSILTETYGIMVYQEQIMKIAQDLAGYSLGDADLLRRA 714

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK   EM K +  F++G+ K G+++ +A ++F+ +  FA+Y FNKSH+ AY  ++YQT
Sbjct: 715  MGKKKVSEMVKHRNIFVNGSMKKGVNEKLANDLFDQMVLFAEYCFNKSHSTAYGAVTYQT 774

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K H+PV ++AA +++   + +K++++  +     I+++ PS+N   VDF + +N+I 
Sbjct: 775  AFLKAHFPVAYMAALLSVNSGSSDKMQRYISNCYSMGIEVISPSINFSGVDFTIKNNQIL 834

Query: 837  YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF- 894
            + L+AIK +G +  R+I+E       F+SL D C R+ S  LN+R LESL+  GALD F 
Sbjct: 835  FGLSAIKNLGDSAIRNIIENRNSFGIFESLSDLCDRLPSNVLNKRSLESLIHCGALDEFS 894

Query: 895  -GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI---TLEKFSVENSSV 950
               +R QLL  L+++  +A    ++R +   N+F  ++   +       L+K    +   
Sbjct: 895  NDNNRAQLLSDLEHVIDWASSRNRDRLSGQGNLFDSKEEFSNVAFLDTQLKKVDDYSLIE 954

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            + + E+++LGFY S HPL       + +      +   T     + L  M+   +Q  TR
Sbjct: 955  KLKLEKQLLGFYLSDHPLKHLAKQAKLISPINISQLEETKDRTKVSLVVMIPDLKQITTR 1014

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
            KG R+  V   + +   EA  FP
Sbjct: 1015 KGDRMAIVQLEDLSGSCEAIVFP 1037


>gi|71733672|ref|YP_275963.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv.
            phaseolicola 1448A]
 gi|257487067|ref|ZP_05641108.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tabaci
            ATCC 11528]
 gi|289626019|ref|ZP_06458973.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aesculi
            str. NCPPB3681]
 gi|289651464|ref|ZP_06482807.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aesculi
            str. 2250]
 gi|71554225|gb|AAZ33436.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv.
            phaseolicola 1448A]
 gi|320323105|gb|EFW79194.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. glycinea
            str. B076]
 gi|320329623|gb|EFW85612.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. glycinea
            str. race 4]
 gi|330868557|gb|EGH03266.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. aesculi
            str. 0893_23]
 gi|331009298|gb|EGH89354.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tabaci
            ATCC 11528]
          Length = 1173

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1065 (38%), Positives = 598/1065 (56%), Gaps = 57/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  
Sbjct: 1    MP--ASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PI G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q
Sbjct: 59   SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F +R Y+
Sbjct: 109  RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWMAVFPERFYI 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +   
Sbjct: 168  EVQRTNRNNDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDP 227

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R    +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   
Sbjct: 228  RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287

Query: 303  IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            I    +   R  +  GLE R                 Q Y  RL+FEL++I +M F GYF
Sbjct: 288  I----DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 344  LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K
Sbjct: 404  FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP +    +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI   
Sbjct: 464  MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPT 522

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592
             L+   P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +      
Sbjct: 523  KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +D++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RP
Sbjct: 583  EEPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642

Query: 653  GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V +               +   +  + P+L  T G+I+YQEQVMQIAQ+++GY
Sbjct: 643  GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH
Sbjct: 703  TLGGADMLRRAMGKKKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSH 762

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAY ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT  
Sbjct: 763  SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822

Query: 826  VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F V  D RI Y L AIKGVG      I +A  + PF  L DFC+RVD K++N+R L+ 
Sbjct: 823  FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDG 882

Query: 885  LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+ +GALD  G                +R  LL +L+   + A+   ++  + H ++F  
Sbjct: 883  LIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGG 942

Query: 930  E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +          K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +  
Sbjct: 943  LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|94986701|ref|YP_594634.1| DNA polymerase III, alpha subunit [Lawsonia intracellularis
            PHE/MN1-00]
 gi|94730950|emb|CAJ54313.1| DNA polymerase III, alpha subunit [Lawsonia intracellularis
            PHE/MN1-00]
          Length = 1169

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1049 (39%), Positives = 613/1049 (58%), Gaps = 36/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL  HS YSLL+GA+ L+ +  +      PA A+TD  NLF+A  F      
Sbjct: 1    MSN---FVHLHCHSEYSLLDGAIRLDALCARTKEFGMPAAAVTDHGNLFAATHFYSICKE 57

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIGC++ +      K++   K        ++LL    EGY  L++LV+R YL D 
Sbjct: 58   YGIKPIIGCEVYVTKDHADKLSKFSKAR----HHLILLARNKEGYHNLVKLVTRGYL-DG 112

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS--------SQVAEKRLLTFKK 176
                 R+  + L++  + G+  L+   +G + R     +           A      +  
Sbjct: 113  FHYKPRVDKTLLKQFSS-GITALSACLAGELPRTIMGKNIFVEKGGTFDDAISIAQEYAS 171

Query: 177  LFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            ++  + Y+ +Q +   ++     ++ +LA    LPLVATN+  +L+ +D EAHD+L+ V 
Sbjct: 172  IYPGQFYLEVQANMLPEQQKVNEKLYELAEYTNLPLVATNDCHYLNADDVEAHDILLCVQ 231

Query: 236  HSTVVSQKDRPRVTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                 +  DR R            EM   FS LP A+ENT++IA  CS  +     + P 
Sbjct: 232  TQAKFNDTDRMRFNATDLYYKSSEEMEKAFSHLPIAIENTIKIAESCSVEMDFSKNLFPV 291

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            +   +        ++E R  A  GL+ RL      K    ++Y +RL+ EL++I +M F 
Sbjct: 292  YELPKGV----TPDDEFRRLAREGLQKRLEVYPNKKQLTTENYWKRLEQELDIICKMGFP 347

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV DFI WAK NNIPVGPGRGS  GS+ A+AL IT+IDPL ++LLFERFLN +R+S
Sbjct: 348  GYFLIVQDFINWAKDNNIPVGPGRGSATGSLVAWALRITNIDPLPYNLLFERFLNIERIS 407

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            +PD D+DFC+D+R +VIRYV NKYG   VAQI TFG ++AKA +RD+GR L M + + D 
Sbjct: 408  LPDIDVDFCEDKRGDVIRYVMNKYGVNSVAQITTFGKMKAKAVVRDIGRVLDMSFKETDN 467

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            + KLIP+D    +  +A+  + + +     +P + RLL+IS KLEGL RHASTHAAG+V+
Sbjct: 468  IAKLIPDDLHMTIL-KAMEVEPKLQALYNEEPHIKRLLDISMKLEGLVRHASTHAAGVVV 526

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-G 593
             D+P+ + +P+YR  +    VTQF+MK +EK GL+KFDFLGL+T+TL+  +L  +  +  
Sbjct: 527  SDKPMDEYLPLYRG-KKGELVTQFDMKMVEKVGLVKFDFLGLRTMTLIHTTLKTIKDQGK 585

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            +  +L  +P DD +TY LL+   T G+FQ+ESSGMRQ L  ++P+C ED+IA+++LYRPG
Sbjct: 586  IPPNLDTLPLDDPKTYELLSKGDTDGVFQVESSGMRQYLRMLKPNCFEDLIAMLALYRPG 645

Query: 654  PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+ + +V  +  RK+G   I    P +   LK+T GVI+YQEQVMQIAQ+++GYSL EAD
Sbjct: 646  PLGSGMVDEFIKRKHGTVTIEYPLPSLKDCLKDTYGVIVYQEQVMQIAQIVAGYSLGEAD 705

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  E M K++ RF+ GA KN ++++IA +IF+L+ KFA+YGFNKSH+AAYA+
Sbjct: 706  LLRRAMGKKNPEAMAKERTRFVEGAIKNNVTESIASDIFDLMEKFAEYGFNKSHSAAYAL 765

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ISY TA++K H+ +EF+AA +T E  N  KI K+    +   I I+ P + T C +F V 
Sbjct: 766  ISYHTAYLKAHFTLEFMAALLTSESGNQNKILKYTAACKDMGIDILKPDIQTSCREFIVK 825

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            DN I + L AIK VG      I+     D PF SL D   RV+ KK+ RRVLESLV  GA
Sbjct: 826  DNSIVFGLCAIKNVGDDAIEKIITTRKKDGPFLSLLDMSFRVNLKKVTRRVLESLVKGGA 885

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-------LEKF 943
             D FG SR  +L +LD I        K+  +   ++ A      S  +         +  
Sbjct: 886  CDSFGCSRAGMLTALDKIIARTYKKIKDEQSNQGSLLAFAPKIESVSLPGIGFTCEEQNM 945

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
               +   +   E+  LGF+ + HPL  Y+  + ++G++  EE         I+ A +V +
Sbjct: 946  PEWDEDEKLLYEKEALGFFLTSHPLQTYRQEIYRLGLQPLEEVREMNDKITIKSAIIVNN 1005

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++   ++G+R+ +V   +     E  FF
Sbjct: 1006 IREILNKRGNRMAFVRVEDLTASAEVTFF 1034


>gi|330985125|gb|EGH83228.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. lachrymans
            str. M301315]
          Length = 1173

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1065 (38%), Positives = 598/1065 (56%), Gaps = 57/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  
Sbjct: 1    MP--ASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PI G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q
Sbjct: 59   SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F +R Y+
Sbjct: 109  RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWMAVFPERFYI 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +   
Sbjct: 168  EVQRTNRNNDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDP 227

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R    +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   
Sbjct: 228  RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287

Query: 303  IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            I    +   R  +  GLE R                 Q Y  RL+FEL++I +M F GYF
Sbjct: 288  I----DEYFRKVSFDGLEERLAVLLPKDTTEDYEARRQVYVDRLNFELDIIIQMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 344  LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K
Sbjct: 404  FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP +    +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI   
Sbjct: 464  MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPT 522

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592
             L+   P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +      
Sbjct: 523  KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +D++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RP
Sbjct: 583  EDPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642

Query: 653  GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V +               +   +  + P+L  T G+I+YQEQVMQIAQ+++GY
Sbjct: 643  GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH
Sbjct: 703  TLGGADMLRRAMGKKKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSH 762

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAY ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT  
Sbjct: 763  SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822

Query: 826  VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F V  D RI Y L AIKGVG      I +A  + PF  L DFC+RVD K++N+R L+ 
Sbjct: 823  FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDG 882

Query: 885  LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+ +GALD  G                +R  LL +L+   + A+   ++  + H ++F  
Sbjct: 883  LIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGG 942

Query: 930  E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +          K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +  
Sbjct: 943  LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|170718818|ref|YP_001783421.1| DNA polymerase III subunit alpha [Haemophilus somnus 2336]
 gi|168826947|gb|ACA32318.1| DNA polymerase III, alpha subunit [Haemophilus somnus 2336]
          Length = 1158

 Score =  767 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1046 (39%), Positives = 595/1046 (56%), Gaps = 38/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S++ G   +  ++      +  A+A+TD  N    + F  +A ++G
Sbjct: 2    SQPRFVHLRVHSDFSMINGITKVKPLIKACVQHEMVAMALTDFTNFCGLVRFYGEAQSSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG  + +          +       +  + LL    EGY  +  L+S+ Y      
Sbjct: 62   VKPIIGADVLV----------KSDLLGDELFELTLLAKNNEGYHNITLLLSKAY-ERGYY 110

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  SWL E   EG+I+L+GG +G + +    N+S   E  +  +++ F D  Y++L
Sbjct: 111  NLPYIDQSWLAE-HHEGIIILSGGRNGDVGKKLLKNNSADVETAVAFYQEYFPDHFYLSL 169

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R     + LA   +LPLVATN+  FLS ED+EAH++ +A+     +    R
Sbjct: 170  SRTGRSDEDRYIQSALILAQQKQLPLVATNDVCFLSPEDFEAHEIRVAIHDGYTLDDPKR 229

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  +   Y ++  EM  +F+D+P ALENTV IA+RC+  +++           +     
Sbjct: 230  PKLYSSQQYFRSEQEMCELFADIPTALENTVLIAQRCNVTIRLGTYF-----LPKFPTGD 284

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  K+  GLE RL         +    ++Y  RL  EL+VI +M F GYFLIV 
Sbjct: 285  LSPEDFLIQKSKEGLEERLQTLFPDPQVRSEKRKEYDDRLQTELDVINKMGFPGYFLIVM 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 345  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D+RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 405  FCMDKRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLIPA 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   ++ +A   + R  E    D  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 465  DPGMTLT-KAFEAEPRLSEIYNNDEEVKALIDMARKLEGVTRNAGKHAGGVVISPSLITD 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R        V
Sbjct: 524  FSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARLVKEGKSAV 583

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+S IP +D ++++LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP++
Sbjct: 584  DISTIPLNDPDSFNLLKKAETTAVFQLESRGMKDLIKKLQPDCFEDIIALVALFRPGPLE 643

Query: 657  NIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N               +   H  + P+L+ T GVI+YQEQVMQIAQ+L+GYSL  
Sbjct: 644  SGMVQNFIDRKHGVEPVSYPDVKYQHESLKPILEPTYGVIVYQEQVMQIAQVLAGYSLGG 703

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM  Q++ F  GA   GI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 704  ADLLRRAMGKKKPEEMAAQRDIFEKGAIAKGIDGDLAMKIFDLVEKFAGYGFNKSHSAAY 763

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT EMDN +KI  F  +  +  + I+PP +NT    F 
Sbjct: 764  ALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVSFYDECLRMGLTIVPPDINTGKHHFS 823

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVF 887
            V DN  I Y + AIKGVG      I+ A      F  L D C+RVD K++NRR  E+L+ 
Sbjct: 824  VNDNGEIVYGIGAIKGVGEVPINAIVSAREQGGIFKDLFDLCARVDLKQINRRTFENLIK 883

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946
            +GA D  G  R  L Q+L++  K +    K+      ++F     +  D +         
Sbjct: 884  SGAFDKLGPHRAALAQNLEDALKASDQHAKDEAIGQVDMFGVLTSSHEDVETAYAHTPRW 943

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            +     + E+  LG Y S HP+  Y   L         E     RG    +  ++V+ + 
Sbjct: 944  SEKQILDGERETLGLYLSSHPITRYLKELSHYSSTRLNELSPNTRGKISTVCGLIVALRF 1003

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T+KG+R+G  T  + +   +   F
Sbjct: 1004 AVTKKGNRLGIATLDDRSGLLDITLF 1029


>gi|330878150|gb|EGH12299.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. glycinea
            str. race 4]
          Length = 1154

 Score =  767 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1065 (38%), Positives = 598/1065 (56%), Gaps = 57/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  
Sbjct: 1    MP--ASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PI G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q
Sbjct: 59   SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F +R Y+
Sbjct: 109  RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWMAVFPERFYI 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +   
Sbjct: 168  EVQRTNRNNDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDP 227

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R    +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   
Sbjct: 228  RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287

Query: 303  IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            I    +   R  +  GLE R                 Q Y  RL+FEL++I +M F GYF
Sbjct: 288  I----DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 344  LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K
Sbjct: 404  FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP +    +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI   
Sbjct: 464  MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPT 522

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592
             L+   P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +      
Sbjct: 523  KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +D++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RP
Sbjct: 583  EEPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642

Query: 653  GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V +               +   +  + P+L  T G+I+YQEQVMQIAQ+++GY
Sbjct: 643  GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH
Sbjct: 703  TLGGADMLRRAMGKKKPEEMAKQRGGFIEGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSH 762

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAY ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT  
Sbjct: 763  SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822

Query: 826  VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F V  D RI Y L AIKGVG      I +A  + PF  L DFC+RVD K++N+R L+ 
Sbjct: 823  FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDG 882

Query: 885  LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+ +GALD  G                +R  LL +L+   + A+   ++  + H ++F  
Sbjct: 883  LIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSHDSGHADLFGG 942

Query: 930  E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +          K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +  
Sbjct: 943  LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|126173703|ref|YP_001049852.1| DNA polymerase III subunit alpha [Shewanella baltica OS155]
 gi|125996908|gb|ABN60983.1| DNA polymerase III, alpha subunit [Shewanella baltica OS155]
          Length = 1157

 Score =  767 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1047 (39%), Positives = 595/1047 (56%), Gaps = 37/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NN    ++F      
Sbjct: 1    MSD-PRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG    +          Q       + ++ ++     GYQ L +++S+ YL  Q
Sbjct: 60   AGVKPIIGADFWM----------QVPGFEGELCALTIIAMNNVGYQNLTQIISQAYLRGQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                V I   WL     EG+++L+G   G + +A    +S   E     ++  F DR ++
Sbjct: 110  VAGRVVIDQEWLLTY-NEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFL 168

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R     V LA    +P+VATN  +FL  ED++AH++ +A+     ++  
Sbjct: 169  ELIRTGRPDEERYLHMAVILAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   YL++  EM  +F+D+P AL N+VEIA+RC+  ++++              
Sbjct: 229  RRPKKYSEQQYLRSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYF-----LPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L + +  GLE RL          A+   +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMSIEDFLVDCSRKGLEERLEFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   +   +E+   D  V  L+++ +KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPEPGMTL-AKAFEVEPALQESYDGDEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +          
Sbjct: 523  TDFAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVKNGRK 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             + +  I   D   + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PIRIEAISLTDPACFRLLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKHEEMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP VN     
Sbjct: 763  AYALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFK 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+
Sbjct: 823  FTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLI 882

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945
             AGALD  G  R  ++ +L    + A    K       ++F        D K    + + 
Sbjct: 883  CAGALDNLGPHRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTP 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                +  E E+  LG Y +GHP++ Y   L+       ++   T RG   + A +VV+ +
Sbjct: 943  WPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTAKAAGLVVATR 1002

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++GS++G +T  + +   E   F
Sbjct: 1003 VMLTKRGSKMGLLTLDDKSARLEIMLF 1029


>gi|227497604|ref|ZP_03927825.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226832930|gb|EEH65313.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 1197

 Score =  767 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1074 (33%), Positives = 566/1074 (52%), Gaps = 54/1074 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             K   FVHL VH+ YS+L+GA  + + + +     QPA+AITD   +F A EF + A  A
Sbjct: 11   AKKDDFVHLHVHTDYSMLDGAGKIKDYVAEAKRLGQPALAITDHGYMFGAYEFYEAARKA 70

Query: 66   GIQPIIGCQLDIDMQ-DNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            GI+PI+G +  +         T              +   +   + LL    EG   L+ 
Sbjct: 71   GIKPIVGVEAYMTPGTSRFDKTRVFWGEESQRSDDVSARGSYTHMTLLSRNDEGLHNLMR 130

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S   L  Q  +S R+    LQ   + GLI  +G  S  I         + A +     
Sbjct: 131  LDSYASLEGQWGKSPRMDRELLQRYAS-GLIGTSGCPSSEIQTRLRLGQWEEALRCAGEL 189

Query: 175  KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG +  YV L  H    ++     +++LA     PL+ATN+S ++  ED    D ++
Sbjct: 190  QDIFGKEFFYVELMDHGLEIEQRVTKDLLRLAKEIGAPLLATNDSHYVRPEDRTIQDAML 249

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
             +   +V+S  DR +   D Y      EM  +F ++P+A +NT+ +A +C          
Sbjct: 250  CINSGSVLSDPDRFKFDGDTYYLRPGREMRELFREMPQACDNTLLVAEQCDVHFATVD-E 308

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
               F+        +  E+    +   G++ R        G   +D R++ ++E+ VI +M
Sbjct: 309  GASFMPAFPVPEGETMESWFIKECWKGMDKRFG------GNIPEDCRKQAEYEIGVIVQM 362

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VAD+I WAK + I VGPGRGSGAGS+ AYA+ IT+++PL+  L+FERFLNP+
Sbjct: 363  GFPGYFLVVADYINWAKNHGIRVGPGRGSGAGSMVAYAMGITELNPLQHGLIFERFLNPE 422

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD D+DF + RR+EVI YV+ KYG ++++Q++T+G ++AK +L+D  R +  PY+ 
Sbjct: 423  RISMPDIDVDFDERRREEVIDYVKAKYGADKISQVVTYGVIKAKQSLKDSSRVMGYPYAV 482

Query: 472  VDRLCKLIPND-PAHPVSLQAIA--------DDSRFREARLADPSVDRLLEISQKLEGLY 522
             DRL K +P       ++++ I         + + FR     DP   +++E++Q LEG+ 
Sbjct: 483  GDRLTKAMPPTIMGKDITIKGIFNPEDERYGEAAEFRALHAEDPDAQKIVELAQGLEGMT 542

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HA  +++    L+ ++PM + ++    +TQF+    E  GL+K DFLGL+ LT++
Sbjct: 543  RQWGVHACAVIMSSATLTDIIPMMQRLQDGAYITQFDYPTCEHLGLLKMDFLGLRNLTVI 602

Query: 583  QKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              +L+ +   G +  D+  +  DD ETY LL+   TLG+FQL+  GMR  L  M+PD  E
Sbjct: 603  SDALENIVANGKEPLDIDHVALDDAETYQLLSRGETLGVFQLDGGGMRTLLRLMKPDNFE 662

Query: 642  DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQV 695
            DI A+ +LYRPGP+  ++   Y  RKNG+++I  IHP     ++P+L  T G+I+YQEQV
Sbjct: 663  DISAVGALYRPGPMGAESHTNYALRKNGQQEITPIHPELKEALEPILGNTYGLIVYQEQV 722

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M+IA  L+G+++ +AD LR+AMGKK  + + K    F +G   NG SK     +++++  
Sbjct: 723  MKIATDLAGFTMGKADALRKAMGKKKMDILAKMFVEFEAGMVANGFSKESVKTLWDVVVP 782

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H+AAY V+SY TA++KTHYP E++AA +T + DN +K+  +  + R   I+
Sbjct: 783  FAKYAFNKAHSAAYGVVSYWTAYLKTHYPTEYMAALLTSQKDNKDKLALYLGECRHMGIK 842

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874
            ++PP VN     F    + I + L AI+ VG      I+ A  +   F S EDF  +V +
Sbjct: 843  VLPPDVNASRAQFSAVGSDIRFGLGAIRNVGANVVDGIVAAREEQGDFTSFEDFLDKVPA 902

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
               N+R ++SL+ AGA D  G SR  L    ++       V++N      ++FA   G  
Sbjct: 903  VVCNKRTIDSLIKAGAFDSLGKSRRSLQACHEDFVDEIIGVKRNEAVGQFDLFASLGGGD 962

Query: 935  SDKI------------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
                             +      +   +   E+ +LG Y S HPL   + +L K+    
Sbjct: 963  QASEDPAFGSGPVFSSEVPDLPEWDKKDKLAFERDMLGLYVSDHPLLGLEGMLSKLADVE 1022

Query: 983  YEESV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + +       G  + +A ++ S Q+K T++G+        +     EA FFP
Sbjct: 1023 IADLLENEERPDGAMVTVAGLITSLQRKTTKQGNLWAIAQVEDLGGTVEALFFP 1076


>gi|330964158|gb|EGH64418.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. actinidiae
            str. M302091]
          Length = 1173

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1065 (38%), Positives = 600/1065 (56%), Gaps = 57/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL++H+ YSL++G + +  ++  + +   PA+A+TD NN+ S ++F + A  
Sbjct: 1    MP--ASFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PI G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q
Sbjct: 59   SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F DR Y+
Sbjct: 109  RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPAEADELLREWLTVFPDRFYI 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR +R  D       V LA  H  PLVATN+  F+++ D+EAH+  + +     +   
Sbjct: 168  EVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFINQTDFEAHETRVCIGEGRALDDP 227

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R    +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   
Sbjct: 228  RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287

Query: 303  IQKEEENELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            I    +   R  +  GLE                   Q Y  RL+FEL++I +M F GYF
Sbjct: 288  I----DEYFRKVSFDGLEERLAVLMPGDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 344  LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K
Sbjct: 404  FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP +    +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI   
Sbjct: 464  MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPT 522

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596
             L+   P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV 
Sbjct: 523  KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRERAKVD 582

Query: 597  ----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                D++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RP
Sbjct: 583  EAPLDIAFIPLDDLPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642

Query: 653  GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V +               +   +  + P+L  T G+I+YQEQVMQIAQ+++GY
Sbjct: 643  GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH
Sbjct: 703  TLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSH 762

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAY ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT  
Sbjct: 763  SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822

Query: 826  VDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F V  D RI Y L AIKGVG      I +A    PF  L DFC+RVD K++N+R L+ 
Sbjct: 823  FKFTVSYDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDG 882

Query: 885  LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+ +GALD  G                +R  LL +L+   + A+   ++  + H ++F  
Sbjct: 883  LIRSGALDRLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGG 942

Query: 930  E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +          K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +  
Sbjct: 943  LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|319405608|emb|CBI79231.1| DNA polymerase III alpha subunit [Bartonella sp. AR 15-3]
          Length = 1140

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 579/1022 (56%), Positives = 746/1022 (72%), Gaps = 8/1022 (0%)

Query: 17   HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
            HS+YSLLEGAL +  I     +D  PAIAITDTNNLF ALEFSQ     GIQPIIGCQL 
Sbjct: 2    HSAYSLLEGALKIKQITQHAISDNMPAIAITDTNNLFGALEFSQSCFIDGIQPIIGCQLA 61

Query: 77   IDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            ID  D    ++  K    +  S I+L  ++  GY  L++LVSR YL         I   W
Sbjct: 62   IDFGDENCNSSLAKLRHSSDFSSIILFAASEIGYANLVQLVSRAYLDKSDVDCPHIKADW 121

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY 195
            L     +G+I LTGG SGPI+ A   +  + A KRL   KK+F DRLYV LQR+  YD+ 
Sbjct: 122  LL-THHKGIIALTGGPSGPINLALAEDRKERAVKRLTYLKKIFSDRLYVELQRYSSYDQK 180

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
             E+ +V+LAYT+ELPLVATN + FL++E YEAHD LMAVA   VVS  DR RVTP+HYLK
Sbjct: 181  VEAALVELAYTYELPLVATNEAFFLNKEGYEAHDALMAVAEGQVVSNPDRKRVTPEHYLK 240

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQKEEENELRN 313
            ++ EMVS+FSDLPEALEN+VEIA RC     +  PILPRFIE   D   + + E  EL +
Sbjct: 241  SQDEMVSLFSDLPEALENSVEIALRCHAYAPIRKPILPRFIESSADLSSVLEAEAKELLD 300

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            +A +GL++RL    +A+GY   DY QRL++E+++I RM+FSGYFLIV+DFI+WAK ++IP
Sbjct: 301  QAESGLKMRLETIGLAEGYTIADYEQRLNYEISIITRMQFSGYFLIVSDFIKWAKAHDIP 360

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGSGAGS+ AYALTITD+DPLRFSLLFERFLNPDR+SMPDFDIDFCQ+RR+EVIRY
Sbjct: 361  VGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPDRISMPDFDIDFCQERREEVIRY 420

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQAI 492
            VQ KYG  +VAQIITFG LQA+A LRDVGR L++PY QVD L KL+P  P   V   +AI
Sbjct: 421  VQEKYGCNQVAQIITFGKLQARAVLRDVGRVLEVPYRQVDYLTKLVPATPGSNVELAKAI 480

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
             D+ +F E +  DP + R+L+I+ +LEGLYRHASTHAAGIVIGDRPLS+LVPMYRD RSD
Sbjct: 481  IDEPKFEEEKKKDPVIGRMLDIALQLEGLYRHASTHAAGIVIGDRPLSELVPMYRDPRSD 540

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
            +PVTQFNMK++E++GL+KFDFLGLKTLT+L+ ++DF+A++G+K++LS IP +D  TY ++
Sbjct: 541  MPVTQFNMKYVEQSGLVKFDFLGLKTLTVLKMAVDFVARKGIKINLSCIPLNDEVTYAMM 600

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T+G+FQ+ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN RK+ +E+I 
Sbjct: 601  SRGETVGVFQVESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIATYNIRKHKEEEIT 660

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
            SIHP ID ++KETQGVI+YQEQVMQIAQ L+GYSL EAD+LRRAMGKKI +EM +Q+ RF
Sbjct: 661  SIHPKIDHLVKETQGVIVYQEQVMQIAQELAGYSLGEADLLRRAMGKKIHKEMQEQRTRF 720

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            +SGA   GI K  A  IF+LLAKFADYGFNKSHA AYA++SYQTA+MK H+PVEFLAASM
Sbjct: 721  VSGAVDGGIDKDQANVIFDLLAKFADYGFNKSHATAYAIVSYQTAYMKAHHPVEFLAASM 780

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            T +M N +K+  F ++A +  I+++ P V T    F+VG+N IYYSL+A+KGVG     H
Sbjct: 781  TYDMTNTDKLNDFRREALRLGIEVIAPCVQTSHRIFEVGENCIYYSLSAVKGVGDMVVDH 840

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            I+    DKPF  LEDFC R+D + +N+R +ESL++AGA DCF  +R  LL SL  +   A
Sbjct: 841  IVARRGDKPFRDLEDFCERIDPRIVNKRAMESLIYAGAFDCFNIAREVLLASLATLNARA 900

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              +  N ++   +IF    G     I L + S  +S+ +  +E + +GFYFS HPL  Y+
Sbjct: 901  LRILDNNSSGQIDIFGMIGGLKEPLI-LSQVSPWSSAEKLYHEFQTIGFYFSAHPLSEYQ 959

Query: 973  PILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L K  ++ + +   +I+G     RLA  VV+KQ +K R G ++G + FS+ + +YEA 
Sbjct: 960  DVLIKKRVQTWSDFATSIKGGATAARLAGTVVAKQIRKIRSGKKMGIIQFSDTSGQYEAV 1019

Query: 1031 FF 1032
             F
Sbjct: 1020 IF 1021


>gi|213969133|ref|ZP_03397272.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. tomato
            T1]
 gi|301383972|ref|ZP_07232390.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato
            Max13]
 gi|302064142|ref|ZP_07255683.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato
            K40]
 gi|213926131|gb|EEB59687.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. tomato
            T1]
          Length = 1173

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1065 (38%), Positives = 600/1065 (56%), Gaps = 57/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL++H+ YSL++G + +  ++  + +   PA+A+TD NN+ S ++F + A  
Sbjct: 1    MP--ASFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PI G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q
Sbjct: 59   SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F DR Y+
Sbjct: 109  RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLAVFPDRFYI 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR +R  D       V LA  H  PLVATN+  F+++ D+EAH+  + +     +   
Sbjct: 168  EVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFINQADFEAHETRVCIGEGRALDDP 227

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R    +   YLK+  EM  +FSDLPEALEN+VEIA+RC+  +++    LP F   +   
Sbjct: 228  RRSHNYSDQQYLKSPEEMAELFSDLPEALENSVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287

Query: 303  IQKEEENELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            I    +   R  +  GLE                   Q Y  RL+FEL++I +M F GYF
Sbjct: 288  I----DEYFRKVSFDGLEERLAVLMPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 344  LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K
Sbjct: 404  FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP +    +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI   
Sbjct: 464  MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPT 522

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596
             L+   P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV 
Sbjct: 523  KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVD 582

Query: 597  ----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                D++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RP
Sbjct: 583  EAPLDIAFIPLDDLPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642

Query: 653  GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V +               +   +  + P+L  T G+I+YQEQVMQIAQ+++GY
Sbjct: 643  GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH
Sbjct: 703  TLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSH 762

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAY ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT  
Sbjct: 763  SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822

Query: 826  VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F V  D RI Y L AIKGVG      I +A    PF  L DFC+RVD K++N+R L+ 
Sbjct: 823  FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDG 882

Query: 885  LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+ +GALD  G                +R  LL +L+   + A+   ++  + H ++F  
Sbjct: 883  LIRSGALDRLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGG 942

Query: 930  E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +          K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +  
Sbjct: 943  LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|197105245|ref|YP_002130622.1| DNA polymerase III, alpha subunit [Phenylobacterium zucineum HLK1]
 gi|196478665|gb|ACG78193.1| DNA polymerase III, alpha subunit [Phenylobacterium zucineum HLK1]
          Length = 1148

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 486/1033 (47%), Positives = 681/1033 (65%), Gaps = 19/1033 (1%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
                 FVHL+V S+YSLLEGA+  + I D   A   PA+A+ D  NLF ALEFS     +
Sbjct: 8    TADAGFVHLRVRSAYSLLEGAIKADKIGDLAKAWGMPAVALADRANLFGALEFSVATKGS 67

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G+QPIIGC L +       + ++    +   P+I+LL  + +GY  L EL S  YL    
Sbjct: 68   GVQPIIGCALPVS-----GIGDRPPERWAKTPTIMLLAQSEQGYLNLCELSSAAYLDVDA 122

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
             +   +  + + E  +EGLI+L+GG  GP+D  F     +     L   K+ FG R YV 
Sbjct: 123  SEEPHVPWTKVVER-SEGLILLSGGPDGPVDHLFAAGKVKEGRAALAEMKRAFGSRFYVE 181

Query: 186  LQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            LQRH    +   E ++V  AY  ++PLVATN+  F + + ++AHD L+ +A  + V Q +
Sbjct: 182  LQRHGLPAEAAAEGELVAFAYDEDVPLVATNDVYFKNPQMHQAHDALLCIADGSFVGQDE 241

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R RVT +H+ K+ ++M ++F+DLPEA +NT++IARRC+F++          +     D  
Sbjct: 242  RRRVTAEHWFKSPADMRALFADLPEACDNTLDIARRCAFMV-----HKRDPLLPSFTDEG 296

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            + E  EL ++A  GL  R+A G  A  + A++Y  RL+ E+ VI +M F GYFLIV+DFI
Sbjct: 297  RSEAEELAHQAREGLRARMAAGQ-ANAFPAEEYEARLEREIQVITQMGFPGYFLIVSDFI 355

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +WAK   IPVGPGRGSGAGS+ AYALTIT++DPLR+ LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 356  KWAKARGIPVGPGRGSGAGSLVAYALTITNLDPLRYGLLFERFLNPERVSMPDFDIDFCQ 415

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EVI YVQ +YG ++VAQIITFG+LQA+A LRDVGR +Q+P  QVDRL K++P +PA
Sbjct: 416  ERREEVINYVQQRYGRDKVAQIITFGTLQARAVLRDVGRVMQLPLGQVDRLAKMVPANPA 475

Query: 485  HPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            +PV+  QA+  + R +E    D +V RLL+++ +LEGLYR+ASTHAAG+VIGDRPL+QL 
Sbjct: 476  NPVTLAQALDIEPRLKEEAARDEAVARLLDVALQLEGLYRNASTHAAGVVIGDRPLTQLT 535

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+YRD RS+LP TQFNMKW+E AGL+KFDFLGLKTLT++ +++  L +RG  VD++ +P 
Sbjct: 536  PLYRDPRSELPATQFNMKWVESAGLVKFDFLGLKTLTVIDRAVKHLEKRGAAVDMNALPL 595

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  TY L++   T+G+FQLE  GMR  L  ++P  IED+ A+VSLYRPGP+DNI  + +
Sbjct: 596  DDGPTYELMSNAQTIGVFQLEGQGMRDTLRQLRPSSIEDVTAIVSLYRPGPMDNIPAFVD 655

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             K G++ I ++HPL++ +LKET G+I+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKK KE
Sbjct: 656  CKFGRKPIDTLHPLLEGVLKETYGIIVYQEQVMQIAQILAGYSLGEADLLRRAMGKKKKE 715

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM+ Q+ RF+SGA   G+    +  IF+L+ KFA YGFNKSHAAAYAV+SYQTAW+K + 
Sbjct: 716  EMEAQRARFVSGAEAKGVPAAQSGAIFDLVDKFAGYGFNKSHAAAYAVVSYQTAWLKANA 775

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PVEF AASM+L++ N +K+  F QDA++F ++I PP VN    DF+V +  + Y+L AI+
Sbjct: 776  PVEFFAASMSLDIANTDKLSVFYQDAKRFGVKIRPPCVNRSGADFEVENGEVLYALGAIR 835

Query: 844  GVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG     H+++      PF  + DF  R+D K++N+R  E+L  AGA D    +R +LL
Sbjct: 836  NVGLQAMEHVVQVRREGGPFRDIFDFVERIDPKQVNKRTFETLARAGAFDAIHPNRAELL 895

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             S D +  + Q +  +R     ++F  +  +   +  L +      + R + E   +GFY
Sbjct: 896  ASADTLVGHGQALAADRAEGKVSLFGDDL-SGGHRPRLTRAEPWTPTERLDEELAAVGFY 954

Query: 963  FSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTF 1020
             SGHPLD     LR+       +     + G    R+A ++  KQ++ +R G +  +VTF
Sbjct: 955  LSGHPLDDMVEALRRKRTDLLTDAIARAVAGAEALRMAGVIRRKQERPSRTGEKFAFVTF 1014

Query: 1021 SEPAKEYEANFFP 1033
            S+P  EYE   FP
Sbjct: 1015 SDPTGEYEV-LFP 1026


>gi|319897758|ref|YP_004135955.1| DNA polymerase iii alpha subunit [Haemophilus influenzae F3031]
 gi|317433264|emb|CBY81639.1| DNA polymerase III alpha subunit [Haemophilus influenzae F3031]
          Length = 1159

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/1048 (38%), Positives = 594/1048 (56%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYDEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +          +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGADVKV----------KSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQR-G 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 110  YNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     +       ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +   
Sbjct: 169  ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++       +   +   
Sbjct: 229  KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA     +         Y +RL  EL+VI +M F GYFLI
Sbjct: 284  GDLSTEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+ +++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     T  D +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A ++V+ 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1003 RIAITKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|119477117|ref|ZP_01617353.1| DNA polymerase III subunit alpha [marine gamma proteobacterium
            HTCC2143]
 gi|119449480|gb|EAW30718.1| DNA polymerase III subunit alpha [marine gamma proteobacterium
            HTCC2143]
          Length = 1207

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1078 (37%), Positives = 592/1078 (54%), Gaps = 69/1078 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL++HS +SL++G + +  ++ K+A    PA+A+TD  N ++ ++F + A AAGI+P
Sbjct: 4    SFVHLRLHSEFSLVDGLVRIKPLVQKVADAGMPAVALTDHCNFYALIKFYKAAMAAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC   +             T   +V  + LL   ++GY+ L EL+SR Y   Q     
Sbjct: 64   ILGCDFHVVDD----------TDETSVSHLTLLAQNSKGYRNLTELISRAYQDGQYLGRP 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I  SWL E  TEG+I L GG  G +      N   +A  RL ++  LF    Y+ LQR 
Sbjct: 114  YIKQSWLTEY-TEGVIALGGGRQGDVGMLLVSNKLDLARTRLASYMSLFPGSFYMELQRT 172

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
               ++     + V LA   + P+VATN   FL   DYEAH+  + +     +    R R 
Sbjct: 173  GRQHEEDYLHKAVTLATELDCPVVATNEVCFLKTGDYEAHETRVCIHEGRALDDPRRSRN 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI---- 303
             +   YL+   EM  +FSD+PEAL NTVEIA+RCS  +++    LP +   +  +     
Sbjct: 233  YSEQQYLRTPEEMAELFSDIPEALINTVEIAKRCSAEIELGEIYLPEYPIPDDYEKDAFF 292

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---------------------------- 335
            Q E  + L+ +    L  +       + Y  +                            
Sbjct: 293  QHEPYDGLKAQTEKSLAAKWVGKEATEDYAKELRTGIFFRKISIEGLNDRLAFLFGDDAI 352

Query: 336  ----DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
                +YR RLDFEL++I  M F GYFLIV DFIQWAK + IPVGPGRGSGAGS+ AYA  
Sbjct: 353  SHIKEYRDRLDFELDIILEMGFPGYFLIVMDFIQWAKDHEIPVGPGRGSGAGSLVAYAQK 412

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D RD+VI YV + YG + V+QIITFG+
Sbjct: 413  ITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDNRDKVISYVADNYGRDAVSQIITFGT 472

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            + AKA +RDV RA    Y   D+L K+IP +    +  +A   +   R+    D     +
Sbjct: 473  MAAKAVIRDVARAQGKSYGLADKLSKMIPFEVGMTLE-KAFEQEDILRDFLRDDEQAQEI 531

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
             +++ +LEG+ R+   HA G+VI    L+   P+Y D      VTQF+   +E+AGL+KF
Sbjct: 532  WDMAVQLEGITRNVGKHAGGVVIAPSKLTDFSPLYCDDSGGGLVTQFDKNDVEEAGLVKF 591

Query: 572  DFLGLKTLTLLQKSLDFLAQ-----RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            DFLGL+TLT++  ++  + +         +++  IP DD  +Y LL    T  +FQLES 
Sbjct: 592  DFLGLRTLTIIDWAVKMINRPKDDGSSPNLEIERIPLDDRASYQLLKRAETTAVFQLESR 651

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YNNRKNGKEKIVSIHPLID 679
            GM+  ++ +QPD +ED+IALV+L+RPGP+D+ +V       +   +         H  + 
Sbjct: 652  GMKDLIKRLQPDNLEDMIALVALFRPGPLDSGMVDDFVNRKHGRAEVAYPDAKYQHEWLK 711

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
            P+L+ T GVI+YQEQVMQIAQ L+GYSL  ADVLRRAMGKK  EEM +Q+  F  GA   
Sbjct: 712  PILEPTYGVIVYQEQVMQIAQELAGYSLGGADVLRRAMGKKNAEEMARQRTSFEDGAKAK 771

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G+   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQTAW+KTHYP EF+AA+M+ E+ N 
Sbjct: 772  GVDPELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKTHYPAEFMAATMSSELQNT 831

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS- 857
            +KI  F ++ R   +    P VN     F V  +  I Y L AIKG+G     ++++   
Sbjct: 832  DKIVIFIEECRAMKLDYRLPDVNEGEYMFTVNKEGAIVYGLGAIKGLGEGPIENMIKTRD 891

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
               PF SL DFC R D +K+N+R +++L+ +G+ D  G  R  LL ++    K A+    
Sbjct: 892  ESGPFTSLFDFCERTDPRKVNKRAIDALIRSGSFDTLGVERAILLAAMPEAVKAAEQSAG 951

Query: 918  NRTNKHENIFAH---EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
            NR     ++F                +     +   +   E+  LG Y +GHP+D Y+  
Sbjct: 952  NRDAGMMDLFGDVVSADEHGDVYSDYQNVRPLSPKEKLGGEKDTLGLYVTGHPIDEYEKE 1011

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            LR+       +  A        +A +VV  +  K ++G  + +VT  + +   E +FF
Sbjct: 1012 LRQFVRNRIVDLKADFNNQ--TMAGLVVGLRTMKNKRGDTMAFVTLDDRSARIEISFF 1067


>gi|84683471|ref|ZP_01011374.1| DNA polymerase III, alpha subunit [Maritimibacter alkaliphilus
            HTCC2654]
 gi|84668214|gb|EAQ14681.1| DNA polymerase III, alpha subunit [Rhodobacterales bacterium
            HTCC2654]
          Length = 1171

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 497/1062 (46%), Positives = 685/1062 (64%), Gaps = 52/1062 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+VH+ YSLLEGA+ +  +     +   PA+A+TDTNN+F ALEFS  A  
Sbjct: 1    MAATPRFIHLRVHTEYSLLEGAVPVKKLAGLCESMDMPAVAVTDTNNMFCALEFSVTASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPIIGCQ+ +           G+ P P  P +VLL     GY+ L++L S +YL D+
Sbjct: 61   AGVQPIIGCQVTVA----FDTPEPGEQPRPGAP-VVLLAQNEGGYENLMKLNSCLYL-DK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  + L+ L++  + GLI LTGG+ GP+       +   A++ +  F ++F DRLYV
Sbjct: 115  HGALPEVTLAELEQY-SAGLICLTGGAEGPVGHWLQQGNRAKAQELMTWFHRVFADRLYV 173

Query: 185  NLQRHRG-------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             LQRH G        ++  E   V++AY   +PLVATN+  F   + YEAHD L+ +A  
Sbjct: 174  ELQRHPGEGGQLTEPEQKTERGFVEMAYAMGIPLVATNDVYFPKTQLYEAHDALICIAEG 233

Query: 238  TV-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
                 Q+ R  +TP HY K+  EM ++F+DLPEA+ENTVEIARRC+F+            
Sbjct: 234  AYVDQQEPRRHLTPQHYFKSPQEMATLFADLPEAIENTVEIARRCAFMAY--------RR 285

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            +        +E +ELR +A  GLE RLA   I      ++Y  RL+FEL +I  M F GY
Sbjct: 286  DPILPKFADDEVDELRRQAKEGLEARLA--VIPHAAPVEEYEARLEFELGIIEGMGFPGY 343

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFI+W+K N IP+GPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMP
Sbjct: 344  FLIVADFIKWSKDNGIPIGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMP 403

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC DRR+E IRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL 
Sbjct: 404  DFDIDFCMDRREETIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLS 463

Query: 477  KLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            KLIP +   PVS+   + D+ R RE   A+  V+RLL  ++++EGL R+ASTHAAG+VIG
Sbjct: 464  KLIPVEGVKPVSITQALKDEPRLREEARAEEVVERLLRYAEQVEGLLRNASTHAAGVVIG 523

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA----- 590
            DRPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D +      
Sbjct: 524  DRPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAIDLIHGQGRD 583

Query: 591  -------------QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
                           G +  ++LIP DD +TY L  +  T+ +FQ+ES+GM  AL  M+P
Sbjct: 584  LHIGPDGAEIYTPAEGGENQINLIPLDDEKTYRLYASAKTVAVFQVESTGMMDALRRMKP 643

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             CIEDI+ALV+LYRPGP++NI  Y   KNG+ +I S+HPLID +L+ETQG+I+YQEQVMQ
Sbjct: 644  TCIEDIVALVALYRPGPMENIPTYCEVKNGQREIESVHPLIDHILEETQGIIVYQEQVMQ 703

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IAQ ++GYSL  AD+LRRAMGKKIKE MD ++ +F  GA++ G+ K  A  +F+LL KFA
Sbjct: 704  IAQEMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAAEKGVDKKKASEVFDLLEKFA 763

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQI 816
            +YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ R+  +I+I
Sbjct: 764  NYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLGVYAEEVRRGLDIEI 823

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA----DKPFDSLEDFCSRV 872
            +PP VN     F V + R+ Y + A+K VG    + I+EA      +KPF +L D   RV
Sbjct: 824  VPPCVNRSEAMFCVSEGRVVYGIGALKNVGVEAMKLIVEARKVEGREKPFVNLYDVARRV 883

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D K++ +R +E L  AGA D    +R ++ +SLD +  Y+  + + R +   ++F  E G
Sbjct: 884  DLKRVGKRPMEMLARAGAFDELDANRRRVFESLDALVSYSAAIHEQRDSAQVSLFG-EAG 942

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                +  L        + R   E + +GFY SGHPLD Y   L++ G+   EE    +  
Sbjct: 943  DDLPEPRLSNAPDWLPNERLAEEHKAIGFYLSGHPLDDYMAALKRKGVVTLEELTKKVER 1002

Query: 993  NN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 ++A  V +KQ++K+ KG+R  +V  ++P    E   F
Sbjct: 1003 APCVAKIAGAVSAKQERKSAKGNRFAFVAMTDPTGACEITVF 1044


>gi|302134069|ref|ZP_07260059.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato
            NCPPB 1108]
          Length = 1173

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1065 (38%), Positives = 599/1065 (56%), Gaps = 57/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL++H+ YSL++G + +  ++  + +   PA+A+TD NN+ S ++F + A  
Sbjct: 1    MP--ASFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PI G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q
Sbjct: 59   SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F DR Y+
Sbjct: 109  RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLAVFPDRFYI 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR +R  D       V LA  H  PLVATN+  F+++ D+EAH+  + +     +   
Sbjct: 168  EVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFINQADFEAHETRVCIGEGRALDDP 227

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R    +   YLK+  EM  +FSDLPEALEN+VEIA+RC+  +++    LP F   +   
Sbjct: 228  RRSHNYSDQQYLKSPEEMAELFSDLPEALENSVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287

Query: 303  IQKEEENELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            I    +   R  +  GLE                   Q Y  RL+FEL++I +M F GYF
Sbjct: 288  I----DEYFRKVSFDGLEERLAVLMPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 344  LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA  RDV R     Y   DRL K
Sbjct: 404  FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVGRDVARVQGKSYGLADRLSK 463

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP +    +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI   
Sbjct: 464  MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPT 522

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596
             L+   P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV 
Sbjct: 523  KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVD 582

Query: 597  ----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                D++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RP
Sbjct: 583  EAPLDIAFIPLDDLPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642

Query: 653  GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V +               +   +  + P+L  T G+I+YQEQVMQIAQ+++GY
Sbjct: 643  GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH
Sbjct: 703  TLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSH 762

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAY ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT  
Sbjct: 763  SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822

Query: 826  VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F V  D RI Y L AIKGVG      I +A    PF  L DFC+RVD K++N+R L+ 
Sbjct: 823  FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDG 882

Query: 885  LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+ +GALD  G                +R  LL +L+   + A+   ++  + H ++F  
Sbjct: 883  LIRSGALDRLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGG 942

Query: 930  E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +          K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +  
Sbjct: 943  LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|254512245|ref|ZP_05124312.1| putative DNA polymerase III alpha subunit subfamily [Rhodobacteraceae
            bacterium KLH11]
 gi|221535956|gb|EEE38944.1| putative DNA polymerase III alpha subunit subfamily [Rhodobacteraceae
            bacterium KLH11]
          Length = 1166

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 491/1057 (46%), Positives = 682/1057 (64%), Gaps = 47/1057 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VH+ YSLLEGA+ L  +       + PA+A+TDTN++FSALEFS  A  
Sbjct: 1    MSSIPRFIHLRVHTEYSLLEGAVRLKKLPGLCEQMEMPAVAVTDTNSMFSALEFSVAASG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+D+           G+ P    P +VLL  +  GY+ L++L S +Y +D+
Sbjct: 61   AGVQPIMGCQVDLTY----VQAQPGEKPKAPAP-LVLLAQSELGYENLMKLSSCLY-VDK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G Q  ++ L  L +  ++GLI LTGG  GP+           AE  +     +F DRLY+
Sbjct: 115  GGQLPQVTLEELADR-SDGLICLTGGPDGPVGHLLQQGQRPAAEALVDRLAGMFPDRLYM 173

Query: 185  NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G D      R  E   V++AY  +LPLVATN+  F + + YEAHD L+ +A   
Sbjct: 174  ELQRHPGEDGQPEAERLTERGHVEMAYAKDLPLVATNDVYFPTSDMYEAHDALICIAEGA 233

Query: 239  V-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                Q+ R R+T  HY K++ EMV++F+DLPEA+ENTVEIA+RC+F+            +
Sbjct: 234  YVDQQEGRRRLTAQHYFKSQQEMVTLFADLPEAIENTVEIAKRCAFMAY--------RRD 285

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    +E  ELR  A  GL+ RLA   I      ++Y++RLDFEL +I  M F GYF
Sbjct: 286  PILPKFADDEVAELRRIANEGLQKRLA--VIPHAVTPEEYQERLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQWAK  +IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIQWAKDEDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIRYVQQKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS++  + D+ R R+   ++  V+RLL   Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALKDEPRLRDEARSEEVVERLLTYGQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G  +
Sbjct: 524  RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFKSGRDL 583

Query: 597  DLSLI------------------PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
             ++                    P DD  TY L +   T+ +FQ+ESSGM  AL+ M+PD
Sbjct: 584  HIAPDGTELYEPADGAVNQINAIPLDDEATYKLYSAAKTVAVFQVESSGMMDALKRMKPD 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDIIALV+LYRPGP++NI  +   KN   +  ++HP ID +L ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIIALVALYRPGPMENIPKFCEVKNKLSQRDTLHPSIDHILDETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ ++GYSL  AD+LRRAMGKKI+E MD ++ +F+ GA++N + +  A  ++ LL KFA+
Sbjct: 704  AQEMAGYSLGGADLLRRAMGKKIQEAMDAERPKFLKGAAENDVDEAKATEVWNLLDKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQT W+K ++PVEF+A  M  ++   +K+  + ++ R+  ++  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLDLPYV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            PP VN     F V D  + Y+L A+K VG      ++E  A KPF +L DF  RVD KK+
Sbjct: 824  PPCVNRSQSTFDVVDGELVYALGALKNVGVEAMNLVVEGRAGKPFVNLFDFARRVDLKKV 883

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             +R LE L  AGA D    +R ++ +SLD + +Y+  + + + +   ++F  E G    +
Sbjct: 884  GKRPLEMLARAGAFDQLDKNRRRVFESLDPLVQYSAAIHEQKNSNQVSLFG-EAGDDLPE 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--I 995
              L   S    + R   E + +GFY SGHPLD Y P L++  +   +E +   R      
Sbjct: 943  PRLSPSSDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKQVLTLDEVMEKARSGPLIA 1002

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++A +V  +Q++K+ +G+R  +   S+P   +E   F
Sbjct: 1003 KMAGVVAGRQERKSARGNRFAFAQLSDPTGAFEVTLF 1039


>gi|149201165|ref|ZP_01878140.1| DNA polymerase III subunit alpha [Roseovarius sp. TM1035]
 gi|149145498|gb|EDM33524.1| DNA polymerase III subunit alpha [Roseovarius sp. TM1035]
          Length = 1166

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 492/1057 (46%), Positives = 673/1057 (63%), Gaps = 47/1057 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VH+ YSLLEGA+ L  +     A   PA+A+TDTNN+F+ALEFS  A  
Sbjct: 1    MSADPRFIHLRVHTEYSLLEGAMRLKKLPGLCVAAGMPAVAVTDTNNMFAALEFSVSAQG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+D+           G+   P  P +VLL  +  GY+ L++L S +YL   
Sbjct: 61   AGVQPIMGCQVDLAYLS----LAPGERAKPPAP-LVLLAQSECGYENLMKLNSCLYLRGD 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     + L+ L     EG+I LTGG  GP+ R         AE  +    + FGDRLYV
Sbjct: 116  G-SLPHVTLTELA-HHAEGVICLTGGPDGPVGRLLQGGQRPAAEALMQRLAQAFGDRLYV 173

Query: 185  NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       +R  E  ++++AY   LPLVATN+  F   + YEAHD ++ VA   
Sbjct: 174  ELQRHPGDGGAPEAERLTERGLIEMAYAMGLPLVATNDVYFPKSDMYEAHDAMLCVAEGA 233

Query: 239  VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q   R R+TP HY K++ EM ++F+DLPEALENTVEIARRC+F              
Sbjct: 234  YVDQSAPRRRLTPQHYFKSQEEMAALFADLPEALENTVEIARRCAFGAYKRN-------- 285

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    +E  ELR +A     +      I      +DY +RL+FEL +I  M F GYF
Sbjct: 286  PILPKFADDEVEELRRQAR--AGLAARLAVIPHAAPVEDYDKRLEFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG +RV QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIQYVQEKYGRDRVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS++  +AD+ R RE    +  VDRLL  +Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALADEPRLREEAKNEEVVDRLLTYAQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----- 591
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + +     
Sbjct: 524  RPLDALVPVYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDMIRKAGRPL 583

Query: 592  -------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                          G + D+  IP DD ++Y L  +  T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  NVAADGTVLYDPPEGFEYDIGAIPLDDEKSYRLYASAKTVAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG  ++ SIHP ID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPTYCEVKNGLRELESIHPSIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKI EEM K++ +F  GA +NG+ K  A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAMENGVDKKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + Q+ ++  ++   
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLSLPWA 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
             P VN     F V    ++Y+L A+K VG    + I     ++PF +L D   RVD K++
Sbjct: 824  APCVNRSEATFDVQGGVLHYALGALKNVGVEAMKLITVGRGNRPFATLYDVAQRVDLKRV 883

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             +R LE L  AGA D    +R ++ +S++ +  Y+  + + + +   ++F  E G    +
Sbjct: 884  GKRPLEMLARAGAFDALDRNRRRVFESIEALMSYSAAIHEQKNSSQVSLFG-EAGDDLPE 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--I 995
              L        + R   E + +GFY SGHPLD Y  +LR+  +K  +E  A        +
Sbjct: 943  PRLAPVDDWLPAERLTEEFKAVGFYLSGHPLDDYMTVLRRQDVKTLDEVTAQAERGPALV 1002

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++A +V  +Q++K+ +G+R  +   S+    YE   F
Sbjct: 1003 KMAGVVAGRQERKSARGNRFAFAQLSDTTGGYEVTLF 1039


>gi|85713117|ref|ZP_01044151.1| DNA polymerase III subunit alpha [Idiomarina baltica OS145]
 gi|85693065|gb|EAQ31029.1| DNA polymerase III subunit alpha [Idiomarina baltica OS145]
          Length = 1159

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1048 (39%), Positives = 606/1048 (57%), Gaps = 37/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL++HS +S+++G   +  I  ++A    PA+A+TD  N    +++   A +
Sbjct: 1    MAADTSFVHLRIHSDFSMVDGLTKVKPICQRVADMNMPAMALTDQMNFCGLVQYYGAAHS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++P+IG  L +           G  P   +  +  L    +GYQ++I+L+S+ YL   
Sbjct: 61   QGLKPLIGADLWV----------WGDYPEGEIFRLTALAMNNDGYQQIIQLISKAYLRGH 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  +WL +    G+I+L+G   G I RA      +  ++ L  +K+ F +R Y+
Sbjct: 111  VQGKPVIDKAWLAQ-HNAGIILLSGAREGDIGRALLKGHQEPLQESLAFYKQYFPERFYL 169

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     +       VQLA  H+LP+VATN  +FL EE++EAH++ +A+     +  K
Sbjct: 170  ELIRTGRAEEEAYLHSAVQLAAEHDLPVVATNEVVFLEEENFEAHEIRVAIHDGYQLGDK 229

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL++  EM  +F+DLPEALENTVEIA+RC+  +++               
Sbjct: 230  RRPKKYSPQQYLRSAEEMHELFADLPEALENTVEIAKRCNVTIRLGEYF-----LPAFPT 284

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                E + L   +  GLE RL         +      Y +RL  EL+VI +M F GYFLI
Sbjct: 285  GDLTEGDYLVKVSREGLEERLEFLFPDEAERQAKRPPYDERLQTELDVINQMGFPGYFLI 344

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 345  VMEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 404

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG + V+QIITFG++ AKA++RDVGR L  PY  VD + KL+
Sbjct: 405  VDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKASIRDVGRVLGHPYGFVDGISKLV 464

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A        E   AD  V  L++ ++ LEG+ R+A  HA G+VI    +
Sbjct: 465  PGDPGMTL-AKAFEQVPELGERYDADEEVKELIDFARILEGVTRNAGKHAGGVVISPTTI 523

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---- 595
            +    +Y D     PVTQF+   +E AGL+KFDFLGL+TLT++Q +LD +  R  +    
Sbjct: 524  TDFAALYCDDEGKNPVTQFDKNDVESAGLVKFDFLGLRTLTIIQWALDMVNARKKEAGEP 583

Query: 596  -VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ I  +D + + +L    T  +FQLES+GM++ +  + PD  EDIIALV+L+RPGP
Sbjct: 584  LIDINAISLNDKQCFDVLKRAETTAVFQLESAGMKKLILRLLPDSFEDIIALVALFRPGP 643

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +++ +V       +   K         H  ++P+L+ T GVI+YQEQVMQ+AQ+++GYSL
Sbjct: 644  LESGMVDNFIDRKHGREKVSYPDETYQHECLEPILEPTYGVILYQEQVMQVAQVMAGYSL 703

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+E F  GA  N I   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 704  GGADLLRRAMGKKKPEEMAKQREVFREGAHNNNIDPELAMKIFDLVEKFAGYGFNKSHSA 763

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT WMKTHYP EF+AA M+ +MDN +KI     +  +  + ++PP VN     
Sbjct: 764  AYALVSYQTLWMKTHYPAEFMAAVMSADMDNTDKIVTLADECERMGLVLLPPDVNKGVYK 823

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D  R+ Y + AIKGVG      I+EA     PF  L DFC RVD KKLN+RVLE L
Sbjct: 824  FTVDDEQRVVYGIGAIKGVGEAPIEAILEARNEGGPFTDLFDFCCRVDLKKLNKRVLERL 883

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + AGA+D  G  R  L+ SL+   + A    +  +    ++F        + +   EK  
Sbjct: 884  IRAGAMDSLGPHRASLMASLEKAMRQAVQHRQAESIGQADMFGVLTTEPEAVEHEFEKVK 943

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                +V  E E+  LG Y +GHP++ ++  L+   +        T +   + +A +V+  
Sbjct: 944  PWPEAVWLEGERETLGLYLTGHPINRFRAELQHYVVGQLANVNETRKNEYVGVAGLVIDV 1003

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +    ++G R   VT  + +   +   +
Sbjct: 1004 RVITNKRGQRFAIVTLDDKSARMDVMLY 1031


>gi|308274799|emb|CBX31398.1| DNA polymerase III subunit alpha [uncultured Desulfobacterium sp.]
          Length = 1179

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1040 (39%), Positives = 601/1040 (57%), Gaps = 21/1040 (2%)

Query: 4    YLEK-SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
             +   S  FVHL VH+ YSLL+GA+   ++ +++      ++AITD  ++F ALEF   A
Sbjct: 1    MMSNISYPFVHLHVHTQYSLLDGAIRFKHLFNRVRDFGMDSVAITDHGSMFGALEFYLNA 60

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                I+PIIGC+  +  +     T+Q       +  ++LL    EGY+ L +L S   L 
Sbjct: 61   TDNNIKPIIGCECYLAPRKLTDKTSQDGKR---LSHLILLAENNEGYRNLCKLASIAQL- 116

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR- 181
            +      RI    LQ+    GLI L+    G I       + + A+     ++ LFG+  
Sbjct: 117  EGFYYKPRIDKEVLQKYSR-GLIALSACLHGEIPMLIGEGNIKEADNAARFYQGLFGENN 175

Query: 182  LYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ LQ +    +      +V +     +PLVATN+  +L++ED  AH++L+ +     V
Sbjct: 176  FYLELQNNGMEIQNKINEALVDMGNRLSIPLVATNDCHYLNKEDARAHEILLCIQTGKTV 235

Query: 241  SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                  +  T   Y K+  EM + F+  P+A++NT +IA+RC+  +  +    P +   E
Sbjct: 236  QDPSHFKFETDQLYFKSGEEMNNFFASTPDAIKNTADIAKRCNIDMDFNNYHFPLYTAIE 295

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFL 358
             +     E+  L  K + G E   A+         ++ YRQRL  E++VI  M F GYFL
Sbjct: 296  GN----TEQELLEQKVLHGFERVFAKIKSKNPAIDENLYRQRLKHEMSVIISMGFPGYFL 351

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVADFI++AK NNIPVGPGRGS AGS+ AY+L IT++DP+   L+FERFLNP R SMPD 
Sbjct: 352  IVADFIKYAKDNNIPVGPGRGSAAGSLVAYSLGITNLDPIEHGLIFERFLNPARKSMPDI 411

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC + RD+V++YV  KYG  RV+QI TFGS++ +A +RDVGRAL +P  ++D + K+
Sbjct: 412  DVDFCINGRDKVLKYVVEKYGENRVSQITTFGSMKTRAVIRDVGRALDIPLREIDEIAKM 471

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP+     +    +  + R  E       +  L+ I + LEGL RHASTHAAG+VI D+P
Sbjct: 472  IPDVLNISLDDA-LTQEPRLSELARQRSDIAELITICRTLEGLTRHASTHAAGVVISDKP 530

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVD 597
            L + +P+YR  ++   VTQF+MK +EK GL+KFDFLGL+ LT++  +L  +  Q     D
Sbjct: 531  LDEYLPLYRG-KNGELVTQFDMKRVEKIGLVKFDFLGLRNLTVIANTLSLISKQGNSPPD 589

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP--I 655
            +  +   D  TY LL    T G+FQLES GM++ L+ ++P+  EDI ALV+LYRPGP   
Sbjct: 590  IDSLDLTDQATYRLLAEGNTTGVFQLESKGMKELLKRVRPENFEDITALVALYRPGPIES 649

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  Y  RK+G++ +  + P ++P+LKET GVI+YQEQVM+IA +++GYS++EAD LR+
Sbjct: 650  GMIDDYVERKHGRKSVEYLVPELEPILKETYGVIVYQEQVMKIAGVIAGYSMAEADDLRK 709

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKKI E M  Q+ERF+SGA+ NG+ K  A  +F L+ KF  YGFNKSH+AAYA+I+YQ
Sbjct: 710  AMGKKIVEIMAAQRERFVSGATANGVPKEKADTLFSLIDKFGGYGFNKSHSAAYALIAYQ 769

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++KTHY VEF+A+ +T EM + + + K+  +     + ++PP +N    DF V D  I
Sbjct: 770  TAYLKTHYQVEFMASLLTSEMGSTDSVVKYISECSSNGVSVLPPDINESDRDFSVSDRNI 829

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             + L A+K VG      ++E      F SL +FC RVD KK+N+RV+ESL+  GA D  G
Sbjct: 830  RFGLVAVKNVGENAIEAVIETRNKDKFTSLFNFCERVDLKKVNKRVIESLIKCGAFDSTG 889

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFE 953
              R +++  LD+  +Y Q V++ + +    +F    E  +F D   + +    N      
Sbjct: 890  TFRSRMMAILDDAVEYGQRVQREKNSPQIGLFGEMTENESFQDIPRIPEIDEWNEKELLA 949

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+  LGFY +GHPL+ YK ++ K              G   R   ++ + +  KTRKG 
Sbjct: 950  FEKEYLGFYITGHPLNKYKELIAKYTNTDSLAIKDMNDGEIARFGGIITNIKIIKTRKGD 1009

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
             + +V   +     E   FP
Sbjct: 1010 DMAYVVTEDMIGSIETTVFP 1029


>gi|260583164|ref|ZP_05850944.1| DNA polymerase III subunit alpha [Haemophilus influenzae NT127]
 gi|260093782|gb|EEW77690.1| DNA polymerase III subunit alpha [Haemophilus influenzae NT127]
          Length = 1159

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/1048 (38%), Positives = 592/1048 (56%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +          +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGADVKV----------KSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQR-G 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 110  YNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     +       ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +   
Sbjct: 169  ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++       +   +   
Sbjct: 229  KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE     L      +      Y +RL  EL+VI +M F GYFLI
Sbjct: 284  GDLSTEDFLVQKSKEGLEERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+ +++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQMLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     T  D +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A +VV+ 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1003 RIAMTKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|28868755|ref|NP_791374.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato
            str. DC3000]
 gi|28851994|gb|AAO55069.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. tomato
            str. DC3000]
          Length = 1173

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1065 (38%), Positives = 600/1065 (56%), Gaps = 57/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL++H+ YSL++G + +  ++  + +   PA+A+TD NN+ S ++F + A  
Sbjct: 1    MP--ASFVHLRLHTEYSLVDGLVRVKPLIKSLTSMNMPAVAVTDQNNMCSLVKFYKAAQG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PI G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q
Sbjct: 59   SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   W+ +  +EG+I L+    G I  A    +   A++ L  +  +F DR Y+
Sbjct: 109  RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLTVFPDRFYI 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR +R  D       V LA  H  PLVATN+  F+++ D+EAH+  + +     +   
Sbjct: 168  EVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFINQADFEAHETRVCIGEGRALDDP 227

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R    +   YLK+  EM  +FSDLPEALEN+VEIA+RC+  +++    LP F   +   
Sbjct: 228  RRSHNYSDQQYLKSPEEMAELFSDLPEALENSVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287

Query: 303  IQKEEENELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            I    +   R  +  GLE                   Q Y  RL+FEL++I +M F GYF
Sbjct: 288  I----DEYFRKVSFDGLEERLAVLMPRDTTEDYETKRQVYVDRLNFELDIIIQMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 344  LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K
Sbjct: 404  FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP +    +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI   
Sbjct: 464  MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMARKLEGIVRNVGKHAGGVVIAPT 522

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596
             L+   P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV 
Sbjct: 523  KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVD 582

Query: 597  ----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                D++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RP
Sbjct: 583  EAPLDIAFIPLDDLPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642

Query: 653  GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V +               +   +  + P+L  T G+I+YQEQVMQIAQ+++GY
Sbjct: 643  GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH
Sbjct: 703  TLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKSNNIEPDLAGNIFDLVEKFAGYGFNKSH 762

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAY ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT  
Sbjct: 763  SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822

Query: 826  VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F V  D RI Y L AIKGVG      I +A    PF  L DFC+RVD K++N+R L+ 
Sbjct: 823  FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQKGPFKDLFDFCARVDLKRINKRTLDG 882

Query: 885  LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+ +GALD  G                +R  LL +L+   + A+   ++  + H ++F  
Sbjct: 883  LIRSGALDRLGPYFELEPKAYQASIDRNRSVLLAALEEAIQAAEQTARSHDSGHSDLFGG 942

Query: 930  E--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +          K    +   R   E+  LG Y +GHP+D Y+  +R+   +   +  
Sbjct: 943  LFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +A ++++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1003 PARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASLF 1045


>gi|145630481|ref|ZP_01786261.1| DNA polymerase III subunit alpha [Haemophilus influenzae R3021]
 gi|144983871|gb|EDJ91313.1| DNA polymerase III subunit alpha [Haemophilus influenzae R3021]
          Length = 1159

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/1048 (38%), Positives = 593/1048 (56%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +          +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGADVKV----------KSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQR-G 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   +G+I+L+GG+ G + +     ++   E  +  +++ F D  Y+
Sbjct: 110  YNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENAAEIESAVAFYQEFFADHFYL 168

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     +       ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +   
Sbjct: 169  ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++       +   +   
Sbjct: 229  KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE     L      +      Y +RL  EL+VI +M F GYFLI
Sbjct: 284  GDLSTEDFLVQKSKEGLEERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+ +++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFETEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     T  D +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A +VV+ 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1003 RIAMTKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|116074620|ref|ZP_01471881.1| DNA polymerase III subunit alpha [Synechococcus sp. RS9916]
 gi|116067842|gb|EAU73595.1| DNA polymerase III subunit alpha [Synechococcus sp. RS9916]
          Length = 1177

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1051 (36%), Positives = 581/1051 (55%), Gaps = 35/1051 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++      PA+A+TD   ++ A+E  +     GI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPQMVERAKELGMPALALTDHGVMYGAVELLKLCQGTGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +         +  +        +V+L   A GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVVNGS----IDDPQQKKERRYHLVVLAKNATGYRNLVKLTSISHLRGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    LQ+  +EGLI+ T    G I +A      +VA      ++++FGD  Y+ 
Sbjct: 118  FSRACIDKHLLQQY-SEGLIVATACLGGEIPQAIMRGRPEVARDVARWYQEVFGDDFYLE 176

Query: 186  LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V++A    + L+ATN++ +L+  D EAHD L+ V    ++S + 
Sbjct: 177  IQDHGSVEDRIVNVEIVKIAKELGIGLIATNDAHYLTRNDVEAHDALLCVLTGKLISDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R R T   ++++  EM  +F D   P  ++  +      +  ++ +  +    + +    
Sbjct: 237  RLRYTGTEFIRSEEEMGRLFVDHLDPAVVQEAIATTAEVAEKVEDYDILGRYQMPRFPIP 296

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                  + L+     GL  RL+            Y +RL +EL V+ +M F  YFL+V D
Sbjct: 297  DGHTPVSYLKEVTEQGLRDRLS--LAEGASIDAVYAERLVYELGVMEQMGFPTYFLVVWD 354

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I++A++  IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 355  YIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDIDTDF 414

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KLIP  
Sbjct: 415  CIERRSEVIDYVTRRYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVA 474

Query: 483  PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
               P  L A+    + +  FRE    DP V R ++++ ++EG  +    HAAG+VI   P
Sbjct: 475  RGKPAKLAAMIGEESPNPDFREKYQNDPVVKRWVDMAMRIEGTNKTFGVHAAGVVIAADP 534

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597
            L +LVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +       +D
Sbjct: 535  LDELVPLQRN-NDGQVITQYYMEDVESMGLLKMDFLGLKNLTMIDKTLELVEANFGESID 593

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               +P  D +T+ LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYRPGP+D 
Sbjct: 594  PDKLPPQDPDTFALLARGDLEGIFQLESSGMRQIVRDLRPSSLEDISSILALYRPGPLDA 653

Query: 658  --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  + NRK+G+E I   H  ++P+L+ET G+++YQEQ+M+IAQ L+GYSL EAD+LRR
Sbjct: 654  GLIPKFINRKHGREAIDFAHQALEPILQETYGIMVYQEQIMKIAQDLAGYSLGEADLLRR 713

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK   EM K +  F+ GAS+ G+ + IA  +F+ +  FA+Y FNKSH+ AY  ++YQ
Sbjct: 714  AMGKKKVSEMQKHRGIFVKGASERGVDEKIADELFDQMVLFAEYCFNKSHSTAYGAVTYQ 773

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYPV ++AA +T+     +K++++  +     I++MPP VN   +DF    +RI
Sbjct: 774  TAYLKAHYPVAYMAALLTVNAGASDKVQRYISNCNAMGIEVMPPDVNASGIDFTPTGDRI 833

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L+A++ +G    RH++ +   D PF+SL D C R+ S  LNRR LESL+  GALD  
Sbjct: 834  LFGLSAVRNLGDGAIRHLIASRQEDGPFESLADVCDRLPSSVLNRRSLESLIHCGALDAL 893

Query: 895  GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE----------KGTFSDKITLEK 942
                +R QL+  LD +  +A    K+R +   N+F                 S       
Sbjct: 894  EPKANRAQLMADLDLLLDWASSRAKDRESGQGNLFDLMAAATAAEGEGANDLSMAPKAPP 953

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                + + +   E+ ++GFY S HPL    P  + +   G            +   AMV 
Sbjct: 954  VPDYHPTEKLRLEKDLVGFYLSDHPLKQLTPPAKLLAPIGLGSLEEQADKAKVSAIAMVS 1013

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +Q  TRKG R+  +T  +     EA  FP
Sbjct: 1014 EYRQVTTRKGDRMAVLTLEDLTGSCEAVVFP 1044


>gi|70728573|ref|YP_258322.1| DNA polymerase III subunit alpha [Pseudomonas fluorescens Pf-5]
 gi|68342872|gb|AAY90478.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens Pf-5]
          Length = 1173

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1065 (39%), Positives = 606/1065 (56%), Gaps = 57/1065 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL++H+ YSL++G + +  ++  +A    PA+A+TD NN+ S ++F + +  
Sbjct: 1    MP--ASFVHLRLHTEYSLVDGLVRIKPLVKALAGMGMPAVAVTDQNNMCSLVKFYKTSMG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI G  L +  +D          P   +  I LLV  A GY+ L EL+SR ++  Q
Sbjct: 59   AGIKPICGADLWLSNKD----------PDNPLSRISLLVMNAVGYRNLTELISRGFIDGQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                + I   W+ E   EGLIML+    G I  A      +VAE     +  +F +R Y+
Sbjct: 109  RNGQIIIEREWVAE-AAEGLIMLSAAKEGEIGMALIAGDLEVAETLAREWMAVFSERFYL 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR +R  D  +    V LA     PLVATN+  F+ +ED+EAH+  + +     +   
Sbjct: 168  EVQRTNRPNDEEQLHAAVALADKIGAPLVATNDVRFIKQEDFEAHETRVCIGEGRALDDP 227

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R +  +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP +   +   
Sbjct: 228  RRSKNYSDQQYLKSAEEMAELFSDLPEALENTVEIAKRCNIEVKLGKHFLPDYPIPDGMT 287

Query: 303  IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            I    +   R  +  GLE R                 Q Y  RL+FEL++I +M F GYF
Sbjct: 288  I----DEYFRKVSFDGLEERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 344  LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K
Sbjct: 404  FDVDFCMDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP +    +  +A   +   R+    D     + E+++KLEG+ R+   HA G+VI   
Sbjct: 464  MIPFEVGMTLE-KAYEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPT 522

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG---- 593
             L+   P+Y D      VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +      
Sbjct: 523  KLTDFSPIYCDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVG 582

Query: 594  -VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +D++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RP
Sbjct: 583  EEPLDIAFIPLDDKPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642

Query: 653  GPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +   + NRK+G+ ++   HP      + P+L  T G+I+YQEQVMQIAQ+++GY
Sbjct: 643  GPLQSGMVDDFINRKHGRAELAYPHPDYQYDGLQPVLAPTYGIILYQEQVMQIAQVMAGY 702

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  FI G + N I   +A NIF+L+ KFA YGFNKSH
Sbjct: 703  TLGGADMLRRAMGKKKPEEMAKQRGGFIEGCASNNIDADLAGNIFDLVEKFAGYGFNKSH 762

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAY ++SYQTAW+K HYP  F+AA ++ +M N +K+    ++ R   +++  P VNT  
Sbjct: 763  SAAYGLVSYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRIMKLRLDAPDVNTSE 822

Query: 826  VDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F V D  RI Y L AIKGVG      I EA    PF  L DFC+RVD K++N+R L+ 
Sbjct: 823  FKFTVNDEGRIVYGLGAIKGVGEGPVEAITEAREAGPFKDLFDFCARVDLKRINKRTLDG 882

Query: 885  LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            L+ +GALD  G                +R  LL +++   K A+   +   + H ++F  
Sbjct: 883  LIRSGALDRLGPHFFDEPKAYQANIDQNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGG 942

Query: 930  EKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                    +     K        R + E+  LG Y +GHP+D Y+  +R+   +   +  
Sbjct: 943  VFVDEDADVYANHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLK 1002

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +A M+++ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1003 PARDTQ--TVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLF 1045


>gi|88812392|ref|ZP_01127642.1| DNA polymerase III, alpha subunit [Nitrococcus mobilis Nb-231]
 gi|88790399|gb|EAR21516.1| DNA polymerase III, alpha subunit [Nitrococcus mobilis Nb-231]
          Length = 1174

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/1059 (37%), Positives = 593/1059 (55%), Gaps = 52/1059 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +HS +SL +G + +  ++  +A    PA+A+TD  NLF A++F + A  AG++PI
Sbjct: 5    FAHLHLHSEFSLQDGLIRVKPLMQAVAQAGMPAVALTDQGNLFGAVKFYRAAVNAGVKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG ++ +   D  +              +VLL +  +GY+ L  L++R YL  Q +    
Sbjct: 65   IGAEIRVADADASERPA----------RLVLLCADTQGYRTLTRLLTRGYLEGQQQGVPV 114

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   WL+     GLI L+GG  G + RA       +A ++L  +++ FGDR Y+ LQR  
Sbjct: 115  VDREWLRGRCA-GLIGLSGGRVGDVGRALLSGEPALAARKLEFWREQFGDRYYLELQRTG 173

Query: 191  GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
               D       V+LA  H + +VATN+  FL  EDY AH+V + +     ++ K RPR  
Sbjct: 174  RPGDEEHVQAAVELATAHGVAVVATNDVCFLRPEDYAAHEVRVCIQDGRTLADKHRPRHY 233

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   YL++  EM  +F+D+PEALENT EIARRC+  L +    LP F   E   I     
Sbjct: 234  SEQQYLRSPKEMAELFADVPEALENTAEIARRCNLHLTLSHSALPVFPIPEGASIDDVLR 293

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             E        L+  L           + Y +RL+ EL VI +M F  YFLIVADFI+WAK
Sbjct: 294  QEAERGLQERLQCSLVTDHPDGVELRRSYSERLERELEVINQMGFPSYFLIVADFIRWAK 353

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDFC + RD
Sbjct: 354  RQGIPVGPGRGSGAGSLVAYALQITDLDPLSYDLLFERFLNPERVSMPDFDIDFCMENRD 413

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI YV  +YG ++V+QI+T G++ A+A +RDVGR L  PY  VDR+ K+IP +    + 
Sbjct: 414  RVIDYVGGRYGRDKVSQIVTHGTMAARAVVRDVGRVLGHPYGYVDRIAKMIPFEIGITLE 473

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+A +         D  V  LL +++KLEGL R+   HA G+VI    L+   P+Y +
Sbjct: 474  -KALAQEEELHRLYREDEEVRTLLGMARKLEGLARNVGRHAGGVVIAPSELTDFAPLYCE 532

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-----DFLAQRGVKVDLSLIPF 603
                   TQ++   IE  GL+KFDFLGL+TLT++  ++        A     +D++ +  
Sbjct: 533  PGGQGLATQYDKDDIEAVGLVKFDFLGLRTLTIIDWTVKAVNTQRSACDEPALDIAALAL 592

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661
            DD +T+ LL    T  +FQLES GM+  +  +QPD  EDIIALV+L+RPGP+ + +   +
Sbjct: 593  DDAKTFELLKRCATTAVFQLESRGMKDLMRRLQPDTFEDIIALVALFRPGPLQSGMVDDF 652

Query: 662  NNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
              RK+G+  +        H  ++P+LK T G+I+YQEQVMQIAQ L+GYSL  AD+LRRA
Sbjct: 653  IARKHGRAAVAYPTRALHHEALEPILKSTYGIILYQEQVMQIAQTLAGYSLGAADLLRRA 712

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  +EM +Q+  F+ GA + G+++  A  +F+L+ KFA YGFNKSH+AAYA+++YQT
Sbjct: 713  MGKKKPQEMAQQRHIFLQGAIECGLARQQAEGLFDLMEKFAGYGFNKSHSAAYALLAYQT 772

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-I 835
            AW+K HYP  F+AA ++ +MDN +K+     + R   I + PP VN     F+  +   I
Sbjct: 773  AWLKAHYPAPFMAAVLSSDMDNTDKVVALIDECRCLQIILDPPDVNRSGYAFQAREMTHI 832

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y L A+KG+G +    ++EA  A  P+  L D C RVD +++N+RV+E+L+ +G+LD  
Sbjct: 833  VYGLGAVKGLGLSAIEALVEAREAGGPYADLFDLCRRVDLRRVNKRVIETLIRSGSLDGL 892

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI---TLEKFSVENSSVR 951
              +R    Q L +  + A+   +NR     ++F              +       +   R
Sbjct: 893  AVNRATAWQQLPDALRSAEQQCRNRDTGQVDLFGLGATPLEQAPLTVSDPGVPEWDEQER 952

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ----- 1006
               E+  LG Y +GHP++ Y+  L  +      +  A   G   R       +++     
Sbjct: 953  LAAEKATLGLYLTGHPIEHYEAELDGIVSARLNQVSAGACGEPARGVG----RKREGERK 1008

Query: 1007 ------------KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                        + T+ G R+G++T  +     +   FP
Sbjct: 1009 VVVAGLVVALRARPTQNGGRMGFITLDDRTGRMDVIVFP 1047


>gi|254421416|ref|ZP_05035134.1| DNA polymerase III, alpha subunit subfamily, putative [Synechococcus
            sp. PCC 7335]
 gi|196188905|gb|EDX83869.1| DNA polymerase III, alpha subunit subfamily, putative [Synechococcus
            sp. PCC 7335]
          Length = 1175

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1056 (35%), Positives = 592/1056 (56%), Gaps = 42/1056 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L +HS YSLL+GA  ++ ++D+       AIA+TD   ++ A+E  +     GI+P
Sbjct: 2    SFVGLHIHSDYSLLDGASHIDPLVDRALELGMDAIALTDHGVMYGAIELLKVCRKKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
            IIG ++ +   D  K   + K         ++L     GY+ L++L +  +L   QGK  
Sbjct: 62   IIGNEMYVINGDITKQEKRPK------YHQLVLAKNDIGYKNLVKLTTVSHLEGVQGKGL 115

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L++   EGLI+ +    G I +A       VA +    +K L GD  Y+ 
Sbjct: 116  FSRPCINKDLLEQYH-EGLIITSACLGGEIPQAILKKRLDVARRVAQWYKDLLGDDFYLE 174

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V++A   ++ +VATN+S F+S  D EAHD L+ +    ++S+  
Sbjct: 175  IQDHGSPEDRIVNVEIVRIAQELDIKIVATNDSHFISCVDVEAHDALLCIQTGKLISEDK 234

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R R +   YLK+ +EM  +F D   PE +E+ V   +  +  ++ +  +    I      
Sbjct: 235  RLRYSGTEYLKSEAEMRRLFRDHIAPEIIEDAVSRTQEVADKVEEYNILGNPQIPNFPIP 294

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                +E+ +   A  GL  R+      +     +YR R+ +E+ ++ +M F+ YFL+V D
Sbjct: 295  EGHTKESYMEKVAWDGLLERMR--LSNREALTDEYRDRMAYEVAMMHQMGFATYFLVVWD 352

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I++A+ +NI VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 353  YIKFARDHNISVGPGRGSAAGSLVAYAMGITNIDPVHHGLLFERFLNPERKSMPDVDTDF 412

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C ++R++VI YV  KYG + VAQIITF  + +KA L+DV R L +PY++ D+L KLIP  
Sbjct: 413  CIEKREKVIEYVTEKYGTDHVAQIITFNRMTSKAVLKDVARVLDIPYNESDKLAKLIPVS 472

Query: 483  PAHPVSLQAI----ADDSRFREARLADP-------SVDRLLEISQKLEGLYRHASTHAAG 531
               P  L  +      D+ F+E   +         +  R ++ +  +EG  +    HAAG
Sbjct: 473  RGKPTKLNVMISDKTPDATFKEKYDSGELIPGTNVTFQRWIDTAITIEGTNKTFGMHAAG 532

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI + PL  +VP+ R+      +TQ+ M+ +E  GL+K DFLGL+ LT++QK++D +  
Sbjct: 533  VVISEHPLDTIVPLQRN-NDGSVITQYYMEDVEAIGLLKMDFLGLRNLTMIQKAVDHIES 591

Query: 592  RGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            R    +DL  +P DD +TY LL      G+FQLESSGMRQ ++ ++P  +EDI ++++LY
Sbjct: 592  RHNIEIDLDALPLDDPKTYELLAGGELAGVFQLESSGMRQIVKELKPSGLEDISSVLALY 651

Query: 651  RPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+D   I  + +RK+G+EKI   H +++P+L+ET G+++YQEQ+M+IAQ L+GYSL 
Sbjct: 652  RPGPLDAGLIPKFIDRKHGREKIDYAHKILEPILRETYGIMVYQEQIMKIAQDLAGYSLG 711

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  +EM+  +E FI GA KN   +  A ++F+ +  FA+Y FNKSH+ A
Sbjct: 712  RADLLRRAMGKKKIKEMELHREEFIEGARKNEFPRKNANDLFDQMVLFAEYCFNKSHSTA 771

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y  +++QTA++K +YPVE++AA +T    + +K++ +        IQ++PP +N   VDF
Sbjct: 772  YGFVTFQTAYLKANYPVEYMAALLTAISGDQDKVQMYIASCLSMRIQVLPPDINRSEVDF 831

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
               +N+I + L+A++ VG      ++++   + PF SL D C RVD + +N+R LE+L+ 
Sbjct: 832  TPLENQILFGLSAVRNVGLGAIEALIKSREEEGPFKSLADLCDRVDLRAVNKRALEALIL 891

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG----------TFSDK 937
            +GAL+    +R QL+  L+ + ++AQ   K+R     N+F    G          TF   
Sbjct: 892  SGALESLEPNRQQLMHDLELVIEWAQSRAKDREVGQGNLFDMLGGGTSNEPTHTTTFESA 951

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
                     +   R + E+ +LGFY S HPL   +   + +      E         +  
Sbjct: 952  PKAPPIEDYDPQERLKLEKELLGFYISDHPLKNIQHSAKILAPIELSELGEKPEKVTLSA 1011

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              M+   +   T+KG  +  V   +     EA  FP
Sbjct: 1012 IVMLSMVKPVTTKKGDSMAVVQIEDLTGHAEAVIFP 1047


>gi|269127115|ref|YP_003300485.1| DNA polymerase III subunit alpha [Thermomonospora curvata DSM 43183]
 gi|268312073|gb|ACY98447.1| DNA polymerase III, alpha subunit [Thermomonospora curvata DSM 43183]
          Length = 1177

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1062 (33%), Positives = 552/1062 (51%), Gaps = 43/1062 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL VH+ YS+L+GA  LN +  ++   + PAIA+TD  N+  A +F + A  AG+
Sbjct: 2    ADSFVHLHVHTEYSMLDGAARLNQLFAEVERQKMPAIAMTDHGNMHGAYDFWKHAKDAGV 61

Query: 68   QPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
             PIIG +  +  +                    +    +  + L      G   L +L S
Sbjct: 62   TPIIGIEAYMAPESRFHKKKVQWGEPSQKRDDVSGGGLINHMTLWARNKTGLHNLFKLSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
            R Y      +  R+    L E  +EG++  TG  SG I           A K   TF+++
Sbjct: 122  RAYTEGFVFKYARMDEELLAE-HSEGVMATTGCPSGKIQTRLRLGQFDEALKAAATFQEI 180

Query: 178  FG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG +  ++ L  H    +R     ++++     +P V TN+S +  E +  AHD L+ V 
Sbjct: 181  FGKENYFLELMDHGLEIERRVRDGLLEIGKKLGIPPVVTNDSHYTHESEAAAHDALLCVQ 240

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                +S  DR R     Y    +E +          E           +           
Sbjct: 241  VGKQLSDPDRFRFDGTGYYLKSAEEMRSLDSSEVWAEGCRNTLLIAERVDPTGFFEHRNL 300

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            + +      + E +  R + + G++ R   G        + +R+++++E+++I +M F G
Sbjct: 301  MPRFPVPEGETEASWFRKEVMRGMDRRFPNGYD------EAHRRQVEYEIDIITQMGFPG 354

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+VADFI WAK N I VGPGRGS AGS+ AYAL ITD+DPL+  L+FERFLNP+R+SM
Sbjct: 355  YFLVVADFIMWAKNNGIAVGPGRGSAAGSLAAYALGITDLDPLQHGLIFERFLNPERVSM 414

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DF + RR +VIRYV  K+G ++VA I TFG+++AKAA++D GR L  PY+  DR+
Sbjct: 415  PDIDVDFDERRRGDVIRYVTEKWGADKVAMIATFGTIKAKAAVKDAGRVLGFPYAMGDRI 474

Query: 476  CKLIPN-DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHAS 526
             K  P       + L AI D++          R+    +  V ++L+++Q LEGL R   
Sbjct: 475  SKAFPPAVMGKEIPLSAIFDENHPRYGEAGELRKMYEEEADVKQILDLAQGLEGLIRQWG 534

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HAAG+++   PL+  +P+ R       +TQF+    E  GL+K DFLGL+ LT++  +L
Sbjct: 535  VHAAGVIMSSEPLTDHIPIMRRDSDGAIITQFDYPTCETLGLLKMDFLGLRNLTIMDDAL 594

Query: 587  D-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
                A +GV++DL  +P DD +T+ LL    TLG+FQL+   MR  L  M+PD  EDI A
Sbjct: 595  KAIKANKGVEIDLLKLPLDDKKTFELLARGDTLGVFQLDGGPMRALLRLMKPDNFEDISA 654

Query: 646  LVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQVMQIA 699
            +++LYRPGP+  ++   Y  RKNG+++I  IHP ++      L  T G+I+YQEQVM IA
Sbjct: 655  VLALYRPGPMGANSHTNYALRKNGQQEITPIHPELEEPLKDILDTTYGLIVYQEQVMAIA 714

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q ++GY+L  AD+LRRAMGKK K E+DKQ E F  G  +NG S      ++++L  F+DY
Sbjct: 715  QRVAGYTLGGADLLRRAMGKKKKAELDKQFEFFEKGMRENGYSDEAIKALWDILLPFSDY 774

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNK+H A Y ++SY TA++K +YP E++AA +T   D+ +K   +  + R+  + ++PP
Sbjct: 775  AFNKAHTAGYGLVSYWTAYLKANYPAEYMAALLTSVKDDKDKSALYLNECRRMGVTVLPP 834

Query: 820  SVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKL 877
             VN    DF    +  + + L+AI+ VG      I+ A      F    DF ++V S+  
Sbjct: 835  DVNESDADFTPKGDAEVRFGLSAIRNVGENVVEAIIAARREKGAFTDFNDFLNKVPSQVC 894

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD- 936
            N+RV+ESL+ AGA D  G+ R  LL   +        +++      +++F    G     
Sbjct: 895  NKRVVESLIKAGAFDSLGHRRRALLTVHEQAIDSVIDIKRKEAIGQDSLFGALDGGEDTT 954

Query: 937  --KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---ATIR 991
               +T+      + + +   E+ +LG Y S HPL   + IL K                 
Sbjct: 955  AFSVTIPDEEEWDKTTKLSFEREMLGLYVSDHPLLGVEHILAKEADTSIAALTGESDRPD 1014

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            G  + +A ++ + Q+K T++G+        +     E   FP
Sbjct: 1015 GQVVTVAGLLSNLQRKVTKQGNSWAMFQLEDLGGSIEVMCFP 1056


>gi|145638463|ref|ZP_01794073.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittII]
 gi|145272792|gb|EDK12699.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittII]
 gi|309751597|gb|ADO81581.1| DNA polymerase III alpha subunit [Haemophilus influenzae R2866]
          Length = 1159

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1048 (38%), Positives = 596/1048 (56%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +          +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGADVKV----------KSTLCGDEYFYLTLLAKNNEGYKNITLLLSKAYQR-G 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   EG+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 110  YNDLPYIDQDWLIE-HREGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R     ++LA +H LPLVATN+ +FL  +D+EAH++ +A+     +   
Sbjct: 169  ALTRTGKPDEERYIQAALKLAKSHGLPLVATNDVMFLKSDDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  T   Y ++  EM  +F+D+P ALENT+ IA+RCS  L++       +   +   
Sbjct: 229  KRPKYYTSQQYFRSEDEMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA     +         Y +RL  EL+VI +M F GYFLI
Sbjct: 284  GDLSTEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PLDPGMTL-AKAFEAEPQLQTAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFSPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPESFELLKRAETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAEYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRSVFKEGAVKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINVGKHH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  K +    K+      ++F     T  D +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALKASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A ++VS 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVSS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1003 RIAITKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|124023285|ref|YP_001017592.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT
            9303]
 gi|123963571|gb|ABM78327.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT
            9303]
          Length = 1171

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1049 (36%), Positives = 579/1049 (55%), Gaps = 33/1049 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++ +      PA+A+TD   ++ A+E  +    A I+P
Sbjct: 2    AFVPLHNHSDYSLLDGATQLPQMVKRAKELGMPALALTDHGVMYGAIELLKLCKNAEIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          +          +V+L   A GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVINGSIEDPQPK----KERRYHLVVLAKNAVGYRNLVKLTSISHLRGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L+   +EGLI+ T    G I +A       VA      ++++FG   Y+ 
Sbjct: 118  FARPCIDKELLKAY-SEGLIVATACLGGEIPQAILRGRIDVARDVARWYQEVFGKDFYLE 176

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V +A    + L+ATN++ +LS+ D EAHD L+ V    ++S + 
Sbjct: 177  VQDHGSPEDRIVNVEIVSIAKELGIELIATNDAHYLSKNDVEAHDALLCVLTGKLISDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R R T   Y+K+  EM  +F+D   P+ L+  +      +  ++ ++ +    + +    
Sbjct: 237  RLRYTGTEYIKSEQEMGRLFADHLEPDVLQEAIANTAAVAEKVEEYSILGSYQMPRFPIP 296

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                  + L   +  GL  RL             Y +RL +EL V+ +M F  YFL+V D
Sbjct: 297  EGHSAVSYLHEVSEQGLRQRLK--LATADPIDDHYGERLTYELGVMEQMGFPTYFLVVWD 354

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I++A++  IPVGPGRGS AGS+ AYAL IT+IDP++  LLFERFLNP+R SMPD D DF
Sbjct: 355  YIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVQNGLLFERFLNPERKSMPDIDTDF 414

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C DRR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KLIP  
Sbjct: 415  CIDRRGEVIDYVTRRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 474

Query: 483  PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
               P  L A+    + ++ FRE    DP V + ++++ ++EG  +    HAAG+VI   P
Sbjct: 475  RGKPAKLAAMIGSDSPNAEFREKYQNDPVVTKWVDMAMRIEGTNKTFGVHAAGVVIAAEP 534

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597
            L  LVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +    G ++D
Sbjct: 535  LDNLVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEISNGERID 593

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               +P +D ET+ LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYRPGP+D 
Sbjct: 594  PDQLPPEDPETFALLARGDLEGIFQLESSGMRQIVRDLRPSSLEDISSILALYRPGPLDA 653

Query: 658  --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  + NRK+G+E I   H  ++P+LKET G+++YQEQ+M+IAQ L+GYSL EAD+LRR
Sbjct: 654  GLIPKFINRKHGREAIDFAHAALEPILKETYGIMVYQEQIMKIAQDLAGYSLGEADLLRR 713

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK   EM K +  F+ GAS++G+ K IA  +F+ +  FA+Y FNKSH+ AY  ++YQ
Sbjct: 714  AMGKKKVSEMQKHRSIFVEGASRSGVDKKIADELFDQMVLFAEYCFNKSHSTAYGAVTYQ 773

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYPV ++A+ +T+     +K++++  +     I++MPP VN   +DF    +RI
Sbjct: 774  TAYLKAHYPVAYMASLLTVNAGASDKVQRYISNCNAMGIEVMPPDVNASGIDFTPAGDRI 833

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L+A++ +G    R ++     D PF SL D C R+ S  LNRR LESL+  GALD  
Sbjct: 834  LFGLSAVRNLGDGAIRQLIANRDGDGPFVSLADLCDRLPSNVLNRRGLESLIHCGALDAI 893

Query: 895  GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--------ITLEKFS 944
                +R QL+  L+ +  +A    ++R +   N+F    G   ++               
Sbjct: 894  DPESNRAQLIADLELLINWAASRARDRLSGQGNLFDLVAGAADEQTSDELSTAPKAAPVP 953

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                + +   E+ ++GFY S HPL       + +   G            + +  M+   
Sbjct: 954  DYPPTEKLRLEKELVGFYLSDHPLKQLTAPAQLLAPIGLASLEDQPDKAKVSVITMLTEM 1013

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +Q  TRKG R+  +   +     EA  FP
Sbjct: 1014 RQVTTRKGDRMAVLKIEDLTGGCEAVVFP 1042


>gi|86136285|ref|ZP_01054864.1| DNA polymerase III subunit alpha [Roseobacter sp. MED193]
 gi|85827159|gb|EAQ47355.1| DNA polymerase III subunit alpha [Roseobacter sp. MED193]
          Length = 1170

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 496/1061 (46%), Positives = 680/1061 (64%), Gaps = 51/1061 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+ H+ YSLLEGAL L  + D     + PAIA+TD+NNLFSALEFS  A  
Sbjct: 1    MTNAPRFIHLRSHTEYSLLEGALRLKKLPDLCKKHEMPAIAVTDSNNLFSALEFSVSASK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+D+           G+ P P  P +VLL  +  GY+ L++L S +YL  Q
Sbjct: 61   AGVQPIVGCQIDL----RFVEPAPGERPQPPAP-LVLLAQSEAGYEHLMKLNSCLYLR-Q 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G +   + L  L       +I L+GG  GP+ R         AE+ +   K +F DRLYV
Sbjct: 115  GSELPYVTLEDLA-TNAGDVICLSGGPDGPVGRLLRQGQRPAAEELMQRLKAIFADRLYV 173

Query: 185  NLQRHRGYDRYRESQ------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G D   E++       V++AY  +LPLVATN+  F + E YEAHD ++ +A   
Sbjct: 174  ELQRHPGEDGQPEAEKLSERGHVEMAYAMDLPLVATNDVYFPNTEMYEAHDAMICIAEGA 233

Query: 239  VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q + R R+T  HY K++ EMV++F+DLPEA+ENTVEIA+RC+F   +          
Sbjct: 234  YVDQSEPRRRLTAQHYFKSQEEMVALFADLPEAIENTVEIAKRCAFKAYLRD-------- 285

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    +E  ELR  A  GL+ RLA   I      ++Y++RLDFEL +I  M F GYF
Sbjct: 286  PILPKFADDEVAELRRIANEGLQNRLA--VIPHAVSVEEYQERLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIKYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S+   + ++ R  E    +P VDRLL+   ++EGL R A THAAG+VIGD
Sbjct: 464  LIPVEGVKPMSIVDSLKEEPRLAEEAKNEPVVDRLLKYGMQVEGLLRSAGTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL  LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + Q G  +
Sbjct: 524  RPLDALVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLIKQSGRDL 583

Query: 597  D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                               ++ IP DD  TY L ++  T+ +FQ+ES+GM  AL+ M+P 
Sbjct: 584  HVAADGTPLYEPPTGAVNEINAIPLDDKPTYDLYSSAKTVAVFQVESTGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG +KI S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPTYCEVKNGLKKIESVHPLIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKIKE MD ++ +F  GA +NG+    A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAGENGVPAKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQT W+K ++PVEF+A  M  ++   +K+  + ++ ++   +  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTGWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLGLPYV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD----KPFDSLEDFCSRVD 873
            PP VN     F V +  + Y+L A+K VG    R + EA  D    +PF ++ DF  RV+
Sbjct: 824  PPCVNRSLATFNVVNGELVYALGALKNVGVDVMRLVAEARNDDGHERPFVNIFDFARRVN 883

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             KK+ +R LE L  AGA D    +R ++  SL+ +  Y+  + + + +   ++F  E G 
Sbjct: 884  LKKIGKRPLEMLARAGAFDQLDRNRRRVFDSLEGLVNYSNAIHEQKNSNQVSLFG-EAGD 942

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
               +  L        + R   E + +GFY SGHPLD Y P L++  +   +E +      
Sbjct: 943  DLPEPRLANTPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRKDVMTLDEVMVKAERG 1002

Query: 994  N--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                ++A +V  +Q++K+ +G+R  +   S+    YE   F
Sbjct: 1003 PFLAKMAGVVAGRQERKSARGNRFAFAQLSDTTGGYEVTIF 1043


>gi|83814834|ref|YP_445111.1| DNA polymerase III, alpha subunit [Salinibacter ruber DSM 13855]
 gi|294506988|ref|YP_003571046.1| DNA polymerase III, alpha subunit [Salinibacter ruber M8]
 gi|83756228|gb|ABC44341.1| DNA polymerase III, alpha subunit [Salinibacter ruber DSM 13855]
 gi|294343316|emb|CBH24094.1| DNA polymerase III, alpha subunit [Salinibacter ruber M8]
          Length = 1166

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1056 (35%), Positives = 589/1056 (55%), Gaps = 50/1056 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+F HL  H+ YSLL+GA  ++++++       PA+AITD  NL+   EF   A  + +Q
Sbjct: 2    PNFSHLHCHTQYSLLDGAAGIDHLIESAERRDIPAVAITDHGNLYGVPEFYTTAQKSDVQ 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIGC+  +        +       PT    VLL     GY+ L++L S  +L +     
Sbjct: 62   PIIGCEFYLTPSGIQDQS------DPTRYHQVLLAKNQTGYENLMQLSSTSFL-EGFYYK 114

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI L  L++   EGL+  T    G + +       + A+++   +  +FGD  Y+ +Q 
Sbjct: 115  PRIDLDLLRK-HHEGLVATTCCLQGQVPQMILNQGEEAAQEKFEEYLDIFGDDYYIEIQD 173

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D++     ++Q A  +++ ++ATN+  ++ ++D+EA D+L+ +      +  DR R
Sbjct: 174  HDIDDQHTVNEVLLQWARAYDVEVLATNDVHYVDQQDHEAQDILLCLQTGDDYNDPDRMR 233

Query: 248  VTPDHYL------KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             + D +          +          EAL NT ++A +CSF L +   ++P +   E  
Sbjct: 234  FSNDQFYLKDSAGMMEALTGIPEEFQREALVNTNKVADKCSFDLPMGDLLMPHYPIPEGF 293

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ +  LR+      + R            Q    RL+ EL +IA   +SGYFLIV 
Sbjct: 294  ---EDMDGYLRHLTFERAKERYGDPL------PQTVVDRLNHELGIIADEGYSGYFLIVQ 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DF   A++ ++ VGPGRGS AGS  +Y L IT++DPL + LLFERFLNP+R+SMPD DID
Sbjct: 345  DFTDAARELDVRVGPGRGSAAGSCVSYCLGITNVDPLEYDLLFERFLNPERVSMPDIDID 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F    R++VI YV  KYG E V QI+TFG++ AK A+RDV R L +P  + D + K+IP+
Sbjct: 405  FDDRGREKVIDYVVEKYGQENVCQIVTFGTMGAKTAVRDVSRVLDIPLDRADEIAKMIPD 464

Query: 482  DPAHPVSLQAIADDSRFREARL-ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   +  QA  ++  FR  +   +P V ++++ ++ LEG  RH   HAAG++I    +S
Sbjct: 465  GPGVDLE-QAFDENPDFRALKDANNPEVSKMMQYAEVLEGSVRHTGVHAAGVIIAPGEIS 523

Query: 541  QLVPMY--RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
              VP+   +    ++  TQ++  W+E+ GL+K DFLGLKTLTL++ +++ +   R V ++
Sbjct: 524  DYVPVSVAKSKGEEVVTTQYDGDWVEEFGLLKMDFLGLKTLTLIEDAVELVEDTRDVDLN 583

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP DD  T+ L     T+ IFQ ES+GMR+ L  ++P  I D+IA+ +LYRPGP++N
Sbjct: 584  IDDIPLDDEATFELFQRGDTVSIFQFESTGMREHLRKLKPTEIGDLIAMNALYRPGPMEN 643

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y  RK+G+E++   HPL++ +L+ T G+ ++QEQVMQ+A+ L+G+SL EAD+LRRAM
Sbjct: 644  IPTYVARKHGQEEVEYPHPLLEDILEPTYGIAVFQEQVMQMARELAGFSLGEADILRRAM 703

Query: 718  GKKIKEEMDKQKERFISGAS-KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            GKK ++ M KQ+E+FI G   +N I +  A  +F+++ +FA YGFNKSH+AAY++++Y+T
Sbjct: 704  GKKKEKLMRKQREKFIKGCQAENDIPEDEADELFDIINEFAGYGFNKSHSAAYSLVAYRT 763

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--- 833
            A++K HYP EF+AA+MT EMDN +K+ K  ++AR   ++++PPS+N     F V      
Sbjct: 764  AYLKAHYPPEFMAAAMTNEMDNTDKLSKVLEEARSMGLEVLPPSINRSQSRFTVEQGPDG 823

Query: 834  --RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
              R+ + LAAIK  G      +++A  +  PFDS+ D    VD   +N+R LE+L  AGA
Sbjct: 824  AYRVRFGLAAIKNAGEKAINALIDAREEHGPFDSIFDLTKNVDLGTVNKRTLEALAQAGA 883

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSS 949
            LD     R QL++ +D   +Y Q V+ +R     ++F   + GT + +  L        S
Sbjct: 884  LDDLEGHRAQLMEIMDKAVRYGQKVQHDRMAGQNSLFGNGDAGTEAMQPGLPDVETWAKS 943

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT------------IRGNNIR- 996
             R + E  VLGFY SGHPLD Y+          + E                     +R 
Sbjct: 944  QRLKEEHEVLGFYVSGHPLDEYRAEADAFATAHFGEPDQLEQVIEQAAGGDGRNRGPVRT 1003

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               ++    +  T+ G  I + T  +   + E   F
Sbjct: 1004 FCGIITEVDRNTTKSGKPIAFATIEDFTGQGEMVIF 1039


>gi|148827930|ref|YP_001292683.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittGG]
 gi|148719172|gb|ABR00300.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittGG]
          Length = 1159

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/1048 (38%), Positives = 594/1048 (56%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +          +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGADVKV----------KSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQR-G 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 110  YNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     +       ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +   
Sbjct: 169  ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++       +   +   
Sbjct: 229  KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA     +         Y +RL  EL+VI +M F GYFLI
Sbjct: 284  GDLSTEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+ +++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFETEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     T  D +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHEDVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A +VV+ 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1003 RIAMTKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|33862920|ref|NP_894480.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT
            9313]
 gi|33634837|emb|CAE20822.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT
            9313]
          Length = 1171

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1049 (35%), Positives = 580/1049 (55%), Gaps = 33/1049 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++ +      PA+A+TD   ++ A+E  +    A I+P
Sbjct: 2    AFVPLHNHSDYSLLDGATQLPQMVKRAKELGMPALALTDHGVMYGAIELLKLCKNAEIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          +          +V+L   A GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVINGSIEDPQPK----KERRYHLVVLAKNAVGYRNLVKLTSISHLRGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L+   +EGLI+ T    G I +A       VA      ++++FG   Y+ 
Sbjct: 118  FARPCIDKELLKAY-SEGLIVATACLGGEIPQAILRGRIDVARDVARWYQEVFGKDFYLE 176

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V +A    + L+ATN++ +LS+ D EAHD L+ V    ++S + 
Sbjct: 177  VQDHGSPEDRIVNVEIVNIAKELGIELIATNDAHYLSKNDVEAHDALLCVLTGKLISDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R R T   Y+K+  EM  +F+D   P+ L+  +      +  ++ ++ +    + +    
Sbjct: 237  RLRYTGTEYIKSEQEMGRLFADHLEPDVLQKAIANTAAVAEKVEEYSILGSYQMPRFPIP 296

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                  + L   +  GL  RL             Y +RL +EL V+ +M F  YFL+V D
Sbjct: 297  EGHSAVSYLHEVSEQGLRQRLK--LATTDPIDDHYGERLTYELGVMEQMGFPTYFLVVWD 354

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I++A++  IPVGPGRGS AGS+ AYAL IT+IDP++  LLFERFLNP+R SMPD D DF
Sbjct: 355  YIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVQNGLLFERFLNPERKSMPDIDTDF 414

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KLIP  
Sbjct: 415  CIERRGEVIDYVTRRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 474

Query: 483  PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
               P  L A+    + ++ FRE    DP V + ++++ ++EG  +    HAAG+VI   P
Sbjct: 475  RGKPAKLAAMIGSDSPNAEFREKYQNDPVVTKWVDMAMRIEGTNKTFGVHAAGVVIAAEP 534

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597
            L  LVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +    G ++D
Sbjct: 535  LDDLVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEVSNGERID 593

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               +P +D ET+ LL      GIFQLES+GMRQ +  ++P  +EDI ++++LYRPGP+D 
Sbjct: 594  PDQLPTEDPETFALLARGDLEGIFQLESTGMRQIVRDLRPSSLEDISSILALYRPGPLDA 653

Query: 658  --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  + NRK+G+E I   H  ++P+LKET G+++YQEQ+M+IAQ L+GYSL EAD+LRR
Sbjct: 654  GLIPKFINRKHGREAIDFAHAALEPILKETYGIMVYQEQIMKIAQDLAGYSLGEADLLRR 713

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK   EM K +  F+ GAS++G+ + IA  +F+ +  FA+Y FNKSH+ AY  ++YQ
Sbjct: 714  AMGKKKVSEMQKHRSIFVEGASRSGVDQKIADELFDQMVLFAEYCFNKSHSTAYGAVTYQ 773

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYPV ++A+ +T+     +K++++  +     I++MPP VN   +DF    +RI
Sbjct: 774  TAYLKAHYPVAYMASLLTVNAGASDKVQRYISNCNAMGIEVMPPDVNASGIDFTPAGDRI 833

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L+A++ +G    R ++     D PF SL D C R+ S  LNRR LESL+  GALD  
Sbjct: 834  LFGLSAVRNLGDGAIRQLIANRDGDGPFVSLADLCDRLPSNVLNRRGLESLIHCGALDAI 893

Query: 895  GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--------ITLEKFS 944
                +R QL+  L+ +  +A    ++R +   N+F    G   ++              +
Sbjct: 894  DPESNRAQLIADLELLIHWAASRARDRLSGQGNLFDLVAGAADEQTSDELSTAPKAAPVT 953

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                + +   E+ ++GFY S HPL       + +   G            + +  M+   
Sbjct: 954  DYPPTEKLRLEKELVGFYLSDHPLKQLTAPAQLLAPIGLASLEDQPDKAKVSVITMLTEM 1013

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +Q  TRKG R+  +   +     EA  FP
Sbjct: 1014 RQVTTRKGDRMAVLNIEDLTGSCEAVVFP 1042


>gi|148549377|ref|YP_001269479.1| DNA polymerase III subunit alpha [Pseudomonas putida F1]
 gi|148513435|gb|ABQ80295.1| DNA polymerase III, alpha subunit [Pseudomonas putida F1]
          Length = 1174

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1060 (38%), Positives = 588/1060 (55%), Gaps = 56/1060 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS +SL++G + +  +   +     PA+AITD +N+ S ++F + A  AGI+PI
Sbjct: 5    FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L +           G  P   +  I  L    +GY+ L EL+SR +   Q    V 
Sbjct: 65   CGADLWLA----------GADPEAPLSRICFLAMNPKGYRNLTELISRGWTDGQRNGLVI 114

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
            +   W+    +EGLI L+ G  G I  A        AE  L  +  +F +R YV +QR +
Sbjct: 115  LQREWIA-PASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTN 173

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
            R  D       V LA     PLVATN+  F+ + D++AH+  + +     +    RPR  
Sbjct: 174  RARDEEYVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCY 233

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   YLK+  EM  +FSDLP+A+ NTVEIA+RC+  +Q+    LP F       I    +
Sbjct: 234  SDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI----D 289

Query: 309  NELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            + LR+ +  GLE         +         Q Y  RL FEL++I +M F GYFLIV DF
Sbjct: 290  DYLRHVSHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDF 349

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 350  IKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFC 409

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D RD VI YV   YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP + 
Sbjct: 410  MDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 469

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +   R+    D     + +++ KLEG+ R    HA G+VI    L+   
Sbjct: 470  GMTLE-KAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFS 528

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598
            P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ +      +    +++
Sbjct: 529  PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNI 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD +TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + 
Sbjct: 589  DFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 648

Query: 659  VVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V +                   +  + P+L  T G+I+YQEQVMQIAQ+++GY+L  AD
Sbjct: 649  MVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGAD 708

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY +
Sbjct: 709  MLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 768

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VN     F V 
Sbjct: 769  VSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVN 828

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D RI Y L AIKGVG      I+EA A   PF  L DFC R+D K++N+R L++LV +G
Sbjct: 829  NDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSG 888

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKG 932
            ALD  G                +R  LL +L    K A+       + H ++F    +  
Sbjct: 889  ALDRLGPHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAA 948

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                     K        R + E+  LG Y +GHP+D Y+  +R+   +   +   +   
Sbjct: 949  DVDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSRET 1008

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A M+++ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1009 Q--TIAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046


>gi|283780088|ref|YP_003370843.1| DNA polymerase III subunit alpha [Pirellula staleyi DSM 6068]
 gi|283438541|gb|ADB16983.1| DNA polymerase III, alpha subunit [Pirellula staleyi DSM 6068]
          Length = 1192

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1055 (34%), Positives = 571/1055 (54%), Gaps = 36/1055 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL  HS YSLL+GA S+  +L +       A+A+TD  NL  ALEF  KA A
Sbjct: 1    MSDRK-FVHLHCHSHYSLLDGASSVPKLLKRAKEHGMSALALTDHGNLHGALEFYNKAKA 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI PIIG +  I      +  +           + LL    +G++ LI+L S   L + 
Sbjct: 60   LGINPIIGYEAYIAPGSRFEKKDAA-NSKEASYHLTLLAQNRQGFKNLIKLASAASL-EG 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS-----SQVAEKRLLTFKKLFG 179
                 RI    L +  +EG+I L+G  S     A           + A++    F K+FG
Sbjct: 118  FYYKPRIDKEIL-QAHSEGIICLSGCVSSEFSNAVLRGHGGDKELKDAQEIAGWFHKVFG 176

Query: 180  DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            DR ++ +  +     R++    V +A    LPLVAT+++ +   ED EA DVL+ V    
Sbjct: 177  DRYFLEIMNNGIDIQRFQLEGAVDVAKKMGLPLVATSDAHYAYAEDAEAQDVLLCVNTGK 236

Query: 239  VVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
              +  +R ++     YL++  EM   F  L +A+  + EIA      L++     P +  
Sbjct: 237  FRTDTNRMKMENGSFYLRSAEEMYEHFHGLEDAVARSQEIADSVHIDLELGKRHFPVYPI 296

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                  +K  E+ LR   V GL+ R A  +  +  G  ++    RL+ ELNVI ++ F  
Sbjct: 297  P----PEKTAEDYLRELCVQGLKERYAGDEEMLPGGELSEVVVARLERELNVINKLGFPN 352

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV DF++ A++ ++P    RGSG G++  +AL ++ + P+++ LLFERFL+ +R   
Sbjct: 353  YFLIVWDFVRHAREQDVP-ATARGSGVGALVCFALYLSHVCPIKYDLLFERFLDLNRKEA 411

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD DIDFC+DRR ++IRYV++KYG   VAQI TFG+L A+AA++DVGR L +P  +V+++
Sbjct: 412  PDIDIDFCKDRRGDIIRYVKDKYGESNVAQIGTFGTLAARAAIKDVGRVLGIPMERVNKV 471

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
              ++P++    +S  A+      +     DP V  +L+++ ++EGL R+  THAA +VI 
Sbjct: 472  TAMVPDELHIHLS-DALEKSDELKAVYNGDPDVREMLDLAMRIEGLARNVGTHAAAVVIA 530

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594
            D+PL++ VP+ R       +TQ++M  +E AGL+K DFLGL+ LT+L K+++ + Q    
Sbjct: 531  DKPLTEYVPLGRVGGKSDIITQWSMGDVEAAGLLKMDFLGLRNLTILSKAVEIIQQTTGK 590

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD    P DD  T+ LL    T GIFQLES G+R  L+ M+PD   DIIA  +LYRPGP
Sbjct: 591  RVDPYKFPLDDKRTFALLQRGETKGIFQLESGGIRDLLQKMKPDHFRDIIATNALYRPGP 650

Query: 655  IDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            ++  +   Y   K+G+++   IHP+ + +L ET GV++YQEQVM+I   L G  L+ +  
Sbjct: 651  LEGGMVADYVAVKHGRKQAEYIHPVCEKILSETNGVMVYQEQVMRILNELGGIELAASYT 710

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            + +A+ KK ++ ++K K +F+ GA + GI++  A + + L+ KFA YGFNKSH+ AYA+I
Sbjct: 711  VIKAISKKKEDLINKNKVQFLKGAVEKGITEKQADDFWNLIIKFAGYGFNKSHSTAYALI 770

Query: 773  SYQTAWMKTHYPVEFLAASMTLE-----MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            +Y TA++K HYPVEF+AA ++ +         + + +  +D  +  I + PP+VN   VD
Sbjct: 771  AYMTAYLKAHYPVEFMAALLSGDIQGRNFKTKDSLVEHLEDCTRMGITVQPPNVNESNVD 830

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F V D +I + L+AIKG G +    I+ A     PF  L DFC RVD+   ++  +E+L+
Sbjct: 831  FAVKDGKILFGLSAIKGCGGSAGESIVAARTKGGPFRDLFDFCERVDATGSSKGTIETLI 890

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKF 943
             AGA DCFG  R Q    ++   +  Q V  +R +  +N+F     E+ + +   TL   
Sbjct: 891  KAGAFDCFGARRSQQFAIVERAIQSGQSVAADRKSGQKNLFGAFEEEEPSKAKSTTLPDV 950

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                S      E+ VLGFY S HPLD +K  L         +       + + L  MV +
Sbjct: 951  PELASKEMATQEKEVLGFYLSSHPLDEHKRTLATYRSHTTADIGPIPDRSEVILGGMVSA 1010

Query: 1004 KQQKKTRK---G--SRIGWVTFSEPAKEYEANFFP 1033
             +   T+    G  SR       +         +P
Sbjct: 1011 IKLSNTKNPKPGAPSRYVMFDLEDTEGTIRCILWP 1045


>gi|270156895|ref|ZP_06185552.1| DNA polymerase III subunit alpha [Legionella longbeachae D-4968]
 gi|289164676|ref|YP_003454814.1| DNA polymerase III, alpha chain [Legionella longbeachae NSW150]
 gi|269988920|gb|EEZ95174.1| DNA polymerase III subunit alpha [Legionella longbeachae D-4968]
 gi|288857849|emb|CBJ11696.1| DNA polymerase III, alpha chain [Legionella longbeachae NSW150]
          Length = 1148

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1039 (39%), Positives = 621/1039 (59%), Gaps = 35/1039 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VH+ +SL++G + +  ++  + +    ++A+TD  NLF+A++  + A  AGI+P
Sbjct: 4    RFVHLRVHTEFSLVDGLVRVKPLMKALPSRGMYSVALTDHCNLFAAVKHYKSAIEAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  L     ++             V S++LL   +EGY+ L  L+S+ Y   Q +   
Sbjct: 64   IIGSDLPCHNPEHP----------DRVFSLILLCLNSEGYKNLTCLISKAYQEGQYQGQP 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+   W+ +  + GLI L+GG SG I +A   +  ++A  R L +++LF +R Y+ +QR 
Sbjct: 114  RVQNQWIPDY-SAGLIALSGGKSGDIGQALLADDEELATSRALYWQELFSNRFYLEIQRT 172

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
               +      +++ LA   +LPLVATN+  FL ++D+EAH+  + +     ++   R  +
Sbjct: 173  GRPEEADYNKKLIALANKLKLPLVATNDVRFLDKDDFEAHEARVCIHEGYTLADPRREQK 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YL++  EM S+F+DLP AL NTVEI++RC+  L +    LP F   +        
Sbjct: 233  YSAQQYLRSADEMASLFADLPSALSNTVEISKRCTVKLDLGNNYLPNFPIPDG----STV 288

Query: 308  ENELRNKAVAGLEVRLAQG-----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            EN L + +  GLE RL Q               +Y +RL  EL+VI  M F+GYFLIVAD
Sbjct: 289  ENYLSHLSKTGLEERLLQIFKNKSPEDLLNTRSEYDKRLQIELDVINNMGFAGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FIQWAKNNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD VI YV  KYG + V+QIITFG++ AKA +RDVGR L  PY  VD+L KLIP +
Sbjct: 409  CMEGRDRVIDYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A+  +   +     +  V  L++++ KLEG+ R+A  HA G+VI    L+  
Sbjct: 469  LGITL-NKALEQEEELKRRYTEEEEVKELIDLALKLEGITRNAGKHAGGVVIAPSQLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
              +Y +  S   V+QF+   +E AGL+KFDFLGL+TLT++  +L  + ++  +  L  I 
Sbjct: 528  TAIYCEEGSSQIVSQFDKDDVEAAGLVKFDFLGLRTLTIIDWALATVNRQRGREGLPPID 587

Query: 603  FDDHET-----YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                 T     + LL    T  +FQLES GM++ +  +QPDC EDIIALV+L+RPGP+ +
Sbjct: 588  ISQIPTDDPASFDLLKACQTTAVFQLESRGMKELINRLQPDCFEDIIALVALFRPGPLQS 647

Query: 658  IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +   + +RK+G+  +   HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L  AD+LRR
Sbjct: 648  GMVDDFIDRKHGRAAVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRR 707

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM KQ+E F  GA++ G+ + +A +IF+L+ KFA YGFNKSH+AAYA+++YQ
Sbjct: 708  AMGKKKPEEMAKQREIFTQGATERGVDEKVATHIFDLMEKFAGYGFNKSHSAAYALVAYQ 767

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K HYP  F+AA M+ +MDN +K+  F  +     ++++PPS+N     F V D+  
Sbjct: 768  TAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLKVLPPSINHSMYHFTVVDDAT 827

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y L AIKGVG +    I+EA      +  L  FC R+D +K+NRRVLE+L+ +GA D 
Sbjct: 828  IIYGLGAIKGVGESAIDCILEARDLGGSYPDLFSFCQRLDLRKVNRRVLEALIKSGAFDQ 887

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            +   R  L  SL+   K A+   +N+++   ++F+       ++         + + R E
Sbjct: 888  WKVERAVLTASLEKALKIAEKEHQNQSSGQFDLFSLLDDGAKEQ-EYVLCKSWSEAQRLE 946

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ VLGFY +GHP D Y+       I    +   +++   + + A VV+ ++  T++G 
Sbjct: 947  GEREVLGFYLTGHPADQYRREFGDF-IVPISQLNPSMQKKAV-ICAQVVAIRKVVTKRGK 1004

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            ++  +   +     +   F
Sbjct: 1005 KLVILGMDDSTARLDIVIF 1023


>gi|170748452|ref|YP_001754712.1| DNA polymerase III, alpha subunit [Methylobacterium radiotolerans JCM
            2831]
 gi|170654974|gb|ACB24029.1| DNA polymerase III, alpha subunit [Methylobacterium radiotolerans JCM
            2831]
          Length = 1172

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 519/1050 (49%), Positives = 708/1050 (67%), Gaps = 34/1050 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHSSYSLLEGAL + +++    AD+QPA+A+TDTNNLF ALEFS+KA   G+QPI
Sbjct: 10   FVHLHVHSSYSLLEGALKVGSLIKAAVADRQPALALTDTNNLFGALEFSEKAAGEGVQPI 69

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G QL +      +  +  +   PT   IVLL     GY  L+ L SR Y      ++ R
Sbjct: 70   AGVQLSVA----FEAADPHQRQAPTSHGIVLLAQDETGYANLLRLASRAYFDTALGEAPR 125

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +    L    +EGLI+LTGG +GP+D AF     ++A  RL   K+ FG DRLYV +QRH
Sbjct: 126  LDAGALA-GASEGLIVLTGGMAGPLDAAFRAGRPELALNRLKRLKETFGEDRLYVEIQRH 184

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +    E+ ++ LA  H L +VATN   F   +DY+AHD L+A+A   +VS   R R+
Sbjct: 185  GLPEEGRIETALLDLAGRHGLGIVATNEPFFAKPDDYDAHDALLAIAEGRLVSDDRRRRL 244

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF------IEKECDD 302
            TP H  K R+EM  +F DLP+AL+ TVEIA RC+   +   PILP F            D
Sbjct: 245  TPTHAFKTRAEMAELFRDLPDALQATVEIAMRCAVRARTRKPILPNFGAVAAGETPPMAD 304

Query: 303  IQKEEEN------------ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
               E  +            ELR +A AGLE+RL Q   A G+  +DYR+RL FEL+VI +
Sbjct: 305  ALAEASDAGAQAVSADEPTELRRQAEAGLELRLKQHGTAPGFSEEDYRKRLAFELDVIVK 364

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            MKF GYFLIV+DFI+WAK ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFERFLNP
Sbjct: 365  MKFPGYFLIVSDFIKWAKDHDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFERFLNP 424

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFDIDFC + R+ VI+YVQ +YG  +V QIITFG+L A+  LRDVGR L+MPY 
Sbjct: 425  ERVSMPDFDIDFCVEGRERVIKYVQQRYGEGQVGQIITFGTLLARGVLRDVGRVLEMPYG 484

Query: 471  QVDRLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            QVD+L KL+P +PA+PV+  QAI  + + ++A   +P V RL++I++KLEGL+RHASTHA
Sbjct: 485  QVDKLTKLVPQNPANPVTLAQAIEGEPKLQQAMEEEPVVGRLIDIAKKLEGLHRHASTHA 544

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            AG+VIGDRPL +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+   D L
Sbjct: 545  AGVVIGDRPLEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRCCTDLL 604

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
             QRG+ +DL+ +P DD  TY  +    T+G+FQ+ES+GMR+AL  MQ D +EDIIALV+L
Sbjct: 605  KQRGIHIDLASLPLDDPNTYGPMGRGETVGVFQVESAGMRKALCEMQADRLEDIIALVAL 664

Query: 650  YRPGPIDNIVVYNNRKNGKEK----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            YRPGP+ NI VY  RK G++          P ++PMLKET G+I+YQEQVM+IA++L+GY
Sbjct: 665  YRPGPMANIPVYCERKLGRDAGNEASWYPDPKLEPMLKETFGIIVYQEQVMEIAKVLAGY 724

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            SL EAD+LRRAMGKKI+ EMD Q++RF+ G ++ G++K  A  IF+LLAKFADYGFNKSH
Sbjct: 725  SLGEADMLRRAMGKKIRAEMDAQRDRFLKGCTERGLTKAKANEIFDLLAKFADYGFNKSH 784

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            AAAYA+++YQTA++K ++PVEFLAA+MTL++DN +K+ +F QDA++  I + PPS+NT  
Sbjct: 785  AAAYALLTYQTAYLKANFPVEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPSINTSG 844

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
              F+V D +I+Y+LAAIKGVG    R ++EA  D+PF  L     R++ + +N+R LESL
Sbjct: 845  EVFEVRDGKIFYALAAIKGVGREAVRALVEARGDRPFKDLACLARRLNPRMINKRTLESL 904

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            V AGALDC    R +   +++ I K A    +  T    ++F          + +    +
Sbjct: 905  VQAGALDCIEPDRARAFAAVEPIMKLAASAVEAETAGVTDMFGGVVAD-DVSLRIPPHEI 963

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI--RLAAMVV 1002
               +   + E   +GF+ SGHPLD Y  +L K+ ++ + +   A   G +   R+AA V+
Sbjct: 964  WPMADTLKREYAAIGFFISGHPLDEYGDLLDKLRVQSWTDFCRAVRAGTSSVGRVAASVL 1023

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + +++T+ G+++G VT S+    +EA  F
Sbjct: 1024 DRAERRTKTGNKMGIVTLSDRTAHFEAIIF 1053


>gi|217974045|ref|YP_002358796.1| DNA polymerase III subunit alpha [Shewanella baltica OS223]
 gi|217499180|gb|ACK47373.1| DNA polymerase III, alpha subunit [Shewanella baltica OS223]
          Length = 1157

 Score =  765 bits (1976), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1047 (39%), Positives = 596/1047 (56%), Gaps = 37/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G   +  IL ++ A    A+A+TD NN    ++F      
Sbjct: 1    MSD-PRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q       + ++ ++     GYQ L +++S+ YL  Q
Sbjct: 60   AGIKPIIGADFWM----------QVPGFEGELCALTIIAMNNIGYQNLTQIISQAYLRGQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                V I   WL     EG+++L+G   G + +A    +S   E     ++  F DR ++
Sbjct: 110  VAGRVVIDQEWLLTY-NEGILLLSGAKEGDLGKALLKGNSTQVESLCEFYQTHFADRYFL 168

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R     V LA    +P+VATN  +FL  ED++AH++ +A+     ++  
Sbjct: 169  ELIRTGRPDEERYLHMAVILAQDKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +   YL++  EM  +F+D+P AL N+VEIA+RC+  ++++              
Sbjct: 229  RRPKKYSEQQYLRSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYF-----LPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L + +  GLE RL          A+   +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMSIEDFLVDCSRKGLEERLEFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDRRDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   +   +E+  AD  V  L+++ +KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPEPGMTL-AKAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGV 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +          
Sbjct: 523  TDFAPLYCDAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVRNGRK 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             + +  I   D   + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PIRIEAISLTDPACFRLLQKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIERKHGREEVSYPDSQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP VN     
Sbjct: 763  AYALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFK 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F V D+ RI Y + AIKGVG      I+EA  D PF  L DFC+R+D KKLN+RV+E L+
Sbjct: 823  FTVDDDLRIVYGIGAIKGVGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLI 882

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945
             AGALD  G  R  ++ +L    + A    K       ++F        D K    + + 
Sbjct: 883  CAGALDNLGPHRASMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTP 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                +  E E+  LG Y +GHP++ Y   L+       ++   T RG   + A +VV+ +
Sbjct: 943  WPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKIAKAAGLVVATR 1002

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++GS++G +T  + +   E   F
Sbjct: 1003 VMLTKRGSKMGLLTLDDKSARLEIMLF 1029


>gi|325849029|ref|ZP_08170521.1| DNA polymerase III, alpha subunit [Anaerococcus hydrogenalis
            ACS-025-V-Sch4]
 gi|325480274|gb|EGC83337.1| DNA polymerase III, alpha subunit [Anaerococcus hydrogenalis
            ACS-025-V-Sch4]
          Length = 1149

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/1057 (33%), Positives = 569/1057 (53%), Gaps = 49/1057 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  F HL +H+ YSLL+G   ++ +++K+   +  + AITD  N++  +EF +K   
Sbjct: 1    MTNN--FTHLHLHTEYSLLDGFTKIDKLMEKLKEYKMNSCAITDHGNMYGVIEFYKKCQD 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIGC++ +   D+     Q K        ++LL     GYQ LI++VS+ Y  + 
Sbjct: 59   NGIKPIIGCEVYVSDNDHKIKNPQNK----RYYHLILLAKNNRGYQNLIKIVSKAYT-EG 113

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 RI    L+E   + +I L+   +G I++    N  + A +    +  LFG +  Y
Sbjct: 114  FYYKPRIDFEVLEEY-KDDIIALSACLNGEINQRILENDIEKAYQTAQKYLDLFGRENFY 172

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H   ++      ++++    ++ +V TN+  ++ + D    DVL  +   +++  
Sbjct: 173  LEIQNHGLKEQKIVNQNLLKIHEDLKIEMVCTNDVHYVEKNDAFYQDVLSCIQTGSLLED 232

Query: 243  KDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            + R ++  D  YLK++  M  IF D P A EN+ +IA  C+  L+ H P LP F +    
Sbjct: 233  EKRMKMPCDEFYLKDQQMMKEIFKDFPRAYENSQKIADMCNVKLEFHNPHLPYFTK---V 289

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                   + L+     GL           G   +  ++R + E++VI  M +  YFLIV 
Sbjct: 290  PENMTNLDYLKYLVNKGLAK-------KYGKVDEKIQKRAEKEISVINNMGYVDYFLIVW 342

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DF+++AK N I VGPGRGS AGS+ +YAL IT IDP++++LLFERFLNP+R+SMPD DID
Sbjct: 343  DFVRYAKDNKIAVGPGRGSAAGSIISYALDITQIDPIKYNLLFERFLNPERVSMPDIDID 402

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC + RD V+ YV + YG + V+QI+TFG ++A+ A+RDVGR + + + +VD++ KLIP 
Sbjct: 403  FCYENRDRVVDYVYDLYGKDHVSQIVTFGRMKARNAIRDVGRVMDISFKKVDKIAKLIPQ 462

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +  +A+ +  +       D    R+++ ++ +E L RH S HAAG+VI    L+ 
Sbjct: 463  AIGMTID-KALENTEKLAYEYENDVETKRMIDTARNIENLPRHTSIHAAGVVISKEILTD 521

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            +VP+     +D  VTQFNM  IE+ GL+K DFLGL+ LT++Q ++  + + + + ++L  
Sbjct: 522  IVPLALS--NDQIVTQFNMTEIEELGLLKMDFLGLRNLTVIQDTIKDVKKYKNIDINLDN 579

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            I  +D +         T+GIFQ ES+GMR  L+ ++P   +D++A  SL+RPGP+D I  
Sbjct: 580  IDENDPKVLDQFRKAETIGIFQFESAGMRNFLKNLKPTRFDDLVAANSLFRPGPMDQIPN 639

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y   K   + I  I   + P+L+ T G+I+YQEQVMQI Q L+G+SL EAD LRRAM KK
Sbjct: 640  YIKNKMYPQNISYIDQSLKPILEVTYGIIVYQEQVMQIVQQLAGFSLGEADNLRRAMSKK 699

Query: 721  IKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
                M+  +E F+             G   NGIS+  A  I++ +  FA Y FNKSH+AA
Sbjct: 700  KMSVMEANREIFVHGKKDEKGNYEVLGCVNNGISEQNANKIYDEMISFAKYAFNKSHSAA 759

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y++++ QTA++K ++  E++A  +T  M +  K+  +  +A++  I+I+PP +N     F
Sbjct: 760  YSLVAIQTAYLKCYFKEEYMANLLTSIMGDSSKVYLYISEAKRLGIEIVPPDINKSERRF 819

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESL 885
                N+I + ++AIK VG      I++   +K + + +DF  R+   D   LN++ LESL
Sbjct: 820  IAEKNKIIFGMSAIKNVGDNLIDLIVKIRDEKIYKTFKDFLERIESNDPTALNKKALESL 879

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKITLEKF 943
            + +GA D  GY R +L+   +   +     EK       N+  F  +     D I     
Sbjct: 880  IKSGAFDSLGYKRSELIAVHETALQSIHDNEKVNLKGQMNLLDFDQKDQNEEDDIKFPPV 939

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-------RGNNIR 996
            +   +  +   E+ VLGFY S HPL+     ++K      E                 + 
Sbjct: 940  NEYKNKQKLSLEKEVLGFYISDHPLNSLGDRVKKYTNFSTEILSELRPIDLDKYDNKEVV 999

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +A ++ +K +  T+K + + + T  +     E   FP
Sbjct: 1000 MAGVITNKSETMTKKNTLMAFSTLEDMYGSIEMIIFP 1036


>gi|302672122|ref|YP_003832082.1| DNA polymerase III E DnaE1 [Butyrivibrio proteoclasticus B316]
 gi|302396595|gb|ADL35500.1| DNA polymerase III E DnaE1 [Butyrivibrio proteoclasticus B316]
          Length = 1179

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1077 (34%), Positives = 558/1077 (51%), Gaps = 70/1077 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VH+ YSLL+G+  +   + ++      A AITD   ++  ++F +    AGI P
Sbjct: 2    AFTHLHVHTEYSLLDGSNKIKEYVKRLGELGMTAGAITDHGVMYGVIDFYKACRDAGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC++ +      +   +          +VLL     GY  L  +VSR +  +      
Sbjct: 62   VIGCEVYVAPGSRFEK--ETAVSDDRYYHLVLLAENNVGYANLSHIVSRGFT-EGYYYKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+ +  L++   EG+I L+   +G I R     +   A++  +    +FG    ++ LQ 
Sbjct: 119  RVDMELLEQYH-EGIIALSACLAGEIPRNIVKGTPDKAKEAAIRLDNIFGHGNFFLELQD 177

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   ++    + ++ L+   ++PLVATN+  +   +D EAHD+L+ +     VS +DR R
Sbjct: 178  HGIPEQRMVNASLMALSQELDIPLVATNDCHYTYADDAEAHDLLLCIQTGKXVSDEDRMR 237

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +Y+K+  EM S+F    EAL+NT +IA RC   ++     LP F   E  D    
Sbjct: 238  YEGGQYYVKSEEEMRSLFPYAQEALDNTQKIADRCHVEIEFGVTKLPHFEVPEGYD---- 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L    + GL  R               + +LD+EL VI RM +  YFLIV D+I +
Sbjct: 294  SWTYLNKLCLDGLHERYPDDDGTL-------KDKLDYELGVIKRMGYVDYFLIVWDYINY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             ++N I VGPGRGS AGS+ +Y + IT+IDP+++ LLFERFLNP+R+SMPD D+DF  +R
Sbjct: 347  CRENGIAVGPGRGSAAGSIVSYCMHITNIDPIKYDLLFERFLNPERVSMPDIDVDFEYER 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R +VI YV  KYG ++V QIITFG+L AK  +RDV R + +PYS  D + K+IP +    
Sbjct: 407  RQDVIDYVTEKYGADKVVQIITFGTLAAKGVIRDVARVMDLPYSFGDTISKMIPTELNIT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   R    +D +V +L+++ +KLEGL RH S HAAG+VI   P   LVP+ 
Sbjct: 467  LD-KALEMNPELRSQYESDETVHKLIDMCKKLEGLPRHTSIHAAGVVICSAPAEDLVPLS 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-------GVKVDLS 599
            R        TQF M  IE+ GL+K DFLGL+TLT+++ + +F  +           +++ 
Sbjct: 526  R-SAEGNVTTQFTMTTIEELGLLKMDFLGLRTLTVIKDATNFANRSLGAKPGDANYINID 584

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I ++D      + +    G+FQLES GM+  ++ ++P  +EDIIA +SLYRPGP+D I 
Sbjct: 585  EIDYNDPAVLASIGSGRCDGVFQLESGGMQSFMKELRPQSLEDIIAGISLYRPGPMDFIP 644

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y   KN    I    P ++P+LK T G I+YQEQVMQI Q L GY+L  AD++RRAM K
Sbjct: 645  KYIAGKNDAGAITYQTPELEPILKPTYGCIVYQEQVMQIVQQLGGYTLGRADLVRRAMSK 704

Query: 720  KIKEEMDKQKERF--------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            K +  M+ ++  F        + G +  GIS  I   I++ +  FA Y FNKSHAA YAV
Sbjct: 705  KKQHVMEVERANFVNGNPEENVPGCASKGISPEIGNAIYDSMMDFAKYAFNKSHAACYAV 764

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++ QTAW+K +YPVEF+AA MT  +DN  K+  +    R  NI ++PP +N     F V 
Sbjct: 765  VALQTAWLKYYYPVEFMAALMTSVIDNPGKVSGYIMSCRNMNIALLPPDINEGFDGFSVT 824

Query: 832  D----------------------NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDF 868
            +                        I Y+L AIKGVG      I++       F +L DF
Sbjct: 825  EIDAGDNDKPIPGAVVTTAPGRKKAIRYALTAIKGVGRPVIASIVQERQLHGKFKNLNDF 884

Query: 869  CSRVDSKK--LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
             SR+  +   +N+R +E+ + AGA +CF  +R Q +    +I        +N       +
Sbjct: 885  LSRMQGRANDVNKRAVENFIKAGAFECFEGTRKQHMTVYAHIMDQLHNSNRNSMAGQMTL 944

Query: 927  --FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
              FA E+     +I L         +  E E+ VLG Y SGHPL+ Y  I +K       
Sbjct: 945  FDFAGEEEKKMYEIPLPDVGEFPRELLLEFEKEVLGIYVSGHPLEEYIGIWKKKITNTTT 1004

Query: 985  ES--------VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +                 + +  ++  K+ K T+    + ++T  +     E   FP
Sbjct: 1005 DFYLDDETGVPVVRDNATVTIGGIISDKKVKYTKTDQIMAFLTVEDLVGSIEVIVFP 1061


>gi|237736354|ref|ZP_04566835.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC 9817]
 gi|229421396|gb|EEO36443.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC 9817]
          Length = 1138

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1033 (37%), Positives = 594/1033 (57%), Gaps = 32/1033 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ YSLL+G   +++ L +       AIAITD  NLF ALEF +KA   GI+PI
Sbjct: 5    FVHLHLHTEYSLLDGVGKIDDYLGRAKELGMQAIAITDHGNLFGALEFYKKARKKGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +  +       +          ++LL    EGY+ L+++ S  ++        R
Sbjct: 65   IGMEAYVCERGMEDKEGRN-------FHLILLARDNEGYRNLLKISSESFIRG-FYYKPR 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF-NSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            +  ++L+E  +EGLI L+    G I R      S       +  +  +FG +  ++ +Q 
Sbjct: 117  VDKNFLKE-HSEGLIALSACMQGEISRRILDMESEDKISSAIDEYVDIFGKENFFIEVQA 175

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   ++     ++ ++A  + L LVATN++ +++E ++   D+L+ V     +S + R R
Sbjct: 176  NGIKEQFELNEKLYEIAKQNNLKLVATNDTHYVNEGEHTLQDILICVQTGAKLSDEKRMR 235

Query: 248  VTPDHYL--KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  +          +  +     EA++NT+ IA RC+  ++      P +    C    K
Sbjct: 236  IETEELFLKSREQVLGQLGEKYLEAVDNTIIIAERCNVDIEFGHFKFPDYKIPTC---VK 292

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E  LR     GL  R   G        +   +R+++EL +I +M ++GYF++V DFI 
Sbjct: 293  TIEAFLRKLVYLGLSKRYPHGL------TKSIVERVEYELGIIEKMGYAGYFVVVWDFID 346

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A++ NIP+GPGRGS AGS+ AYAL IT +DPL+++L+FERFLNP+R+SMPD DID CQ+
Sbjct: 347  FARRKNIPIGPGRGSAAGSLIAYALGITQLDPLKYNLIFERFLNPERISMPDIDIDICQE 406

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV  KYG ++VAQIITFG+++A+AA+RDVGR L  P S++D + KL+P +   
Sbjct: 407  RRQEVIDYVIEKYGADKVAQIITFGTMKARAAIRDVGRVLNTPLSKIDAVAKLVPFNATI 466

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              +   +     FR+  L D  + ++++IS K+E   RHAS HAAGIVI   PL+  VP+
Sbjct: 467  KQT---LEGVEEFRKQYLEDREIQKVIDISAKIENKVRHASVHAAGIVITKDPLTDTVPL 523

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
            Y D ++ +  TQ+ MK +E  GL+K DFLGL+ LT LQ+++D++ +  G ++ L  IP +
Sbjct: 524  YCDTKNKVVSTQYQMKELEDLGLLKMDFLGLRNLTNLQRTIDYIKEDLGEEIRLEDIPLN 583

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
              + Y LL+   T G+FQ+ES G+R+ L  ++PD  EDIIAL++LYRPGP+ + +V +  
Sbjct: 584  SKKVYELLSRGDTSGVFQMESVGIRKILVKLKPDKFEDIIALLALYRPGPLGSGMVDDFI 643

Query: 665  KNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
                   +I   HP ++  LKET GVI+YQEQVM+IA +++GYSL EAD+LRRAMGKK  
Sbjct: 644  NGKNGITEIKYPHPSLEQTLKETYGVILYQEQVMKIANIMAGYSLGEADLLRRAMGKKNV 703

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + M++ +E+FI+ + +NG S+  A+ +FEL+ KFA YGFNKSH+AAYA+I+Y TA+ K H
Sbjct: 704  QIMEENREKFITRSIENGYSEEKALEMFELIDKFAGYGFNKSHSAAYALIAYWTAYFKAH 763

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            Y   + AA MT EM ++E I  +  DA+  N+++  P VN     F V  + I +SLAAI
Sbjct: 764  YMKHYYAALMTSEMAHIEDIAYYVDDAKVHNLKLHLPDVNRATSKFIVDKDGIVFSLAAI 823

Query: 843  KGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K VG   +  I+E  + +  + +LEDF  R     LN++ LESL+ AGALD    +R Q 
Sbjct: 824  KNVGEGVSEKILEEYNENGEYKNLEDFVVRTKKYGLNKKALESLILAGALDGLPGNRRQK 883

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             +S+D I  YA    K    +  N+F   K +     TL + +  +       E+  LGF
Sbjct: 884  FESVDKIIDYANRKLKEDDIQQMNLFGEAKSSLGV-FTLPQVTEYSLDELLSKEKEYLGF 942

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTF 1020
            YFS HPLD Y+ +++   +    E         ++   ++   ++  T+  G  +G    
Sbjct: 943  YFSAHPLDSYRRLIKVFRLSPINEIKEEKTTQILKTCGILRDVKKIVTKNSGQIMGVFEL 1002

Query: 1021 SEPAKEYEANFFP 1033
             +   +     FP
Sbjct: 1003 EDYYDKISCVLFP 1015


>gi|223039577|ref|ZP_03609864.1| DNA polymerase III subunit alpha [Campylobacter rectus RM3267]
 gi|222879148|gb|EEF14242.1| DNA polymerase III subunit alpha [Campylobacter rectus RM3267]
          Length = 1328

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1062 (36%), Positives = 599/1062 (56%), Gaps = 45/1062 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F HL +H+ YSLL+GA  +  +   + +    A AITD  N+F A++F +    
Sbjct: 1    MSDFTDFTHLHLHTEYSLLDGANRIKELAKTLKSQGVKAAAITDHGNMFGAIDFYKTMKN 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+P+IG +  I   + L     G         + L+     GY+ L+ L S  Y+ + 
Sbjct: 61   EGIKPLIGIEAYIHNGEEL-----GDKSTKQRFHLCLIAKNEIGYKNLMYLSSMSYI-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF---------NSSQVAEKRLLTFK 175
                 RI    L+E  +EG+I  +    G ++                 + A++  L +K
Sbjct: 115  FYYYPRINKKILKE-HSEGIICSSACLQGEVNWNLNQSERNLRFGAGGYEAAKEAALWYK 173

Query: 176  KLFGDRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
             +FGD  Y+ + RH   D+ R   ++++LA    + ++ATN++ +  ++   AH+V M +
Sbjct: 174  DVFGDDFYLEIMRHGIGDQRRIDDEILRLAKELNIKVIATNDTHYTFKQRAGAHEVFMCI 233

Query: 235  AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            A + ++   +R R +  + Y+K  ++M  +F+D+PEA+ NT EI  +C   +++     P
Sbjct: 234  AMNKLLDDPNRLRHSVHEFYVKTPAQMSELFADIPEAVTNTQEIVDKCDLTIKLGDATPP 293

Query: 294  RF--------------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
             F               E +       +     ++   GLE RL           ++YR 
Sbjct: 294  NFKFTLEYAAERNLSLPEPDKRYSIPNDSVLFEHECRQGLEDRLK---FVPAERHEEYRT 350

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RL  E+++I +M F GY +IV DFI  AKK  +PVGPGRGS AGS+ AY+L ITD+DPL 
Sbjct: 351  RLQREIDIINKMNFPGYMMIVWDFINEAKKRGVPVGPGRGSAAGSLVAYSLKITDLDPLP 410

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            ++LLFERFLNP+R+SMPD D+DFCQ+RR E+I YV  KYG   VAQ+ITFG L AK  +R
Sbjct: 411  YNLLFERFLNPERVSMPDIDVDFCQNRRGEIIDYVIEKYGKFNVAQVITFGKLLAKGVIR 470

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            DV R   MPY++ D + KLI ++    +  QA   + +  E    + + +R+ + +  LE
Sbjct: 471  DVARVCDMPYAEADAMAKLILDEIGITLE-QAFEKEPKIGELIATNSNANRIWKFALDLE 529

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPM--YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            GL R+A  HAAG+VI +  L    P+    +   D  VTQ+++K++E   LIKFDFLGLK
Sbjct: 530  GLNRNAGMHAAGVVISNEELWNKTPLFRQPNAEEDHFVTQYSLKYLEDVDLIKFDFLGLK 589

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLI-PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            TLT++  ++  + +R  K  +      +D +TY  +++  TLG+FQ+ES GM++    M+
Sbjct: 590  TLTVIDNAVKLVKKRFGKEIIWEQVNKNDPKTYETISSGQTLGLFQIESEGMQKVGADMR 649

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            PDC EDIIA++SLYRPGP+D I  +  RK+G E I  I P ++P+L+ T GVI+YQEQVM
Sbjct: 650  PDCFEDIIAMISLYRPGPMDLIPDFIKRKHGLEPITYIFPELEPILEPTYGVIVYQEQVM 709

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            QI Q + G+SL  AD++RRAMGKKIKEEMD+ K +FI GA   G+    +  +FEL+  F
Sbjct: 710  QIVQTIGGFSLGGADLVRRAMGKKIKEEMDRLKGKFIEGAQAQGLDGKKSGELFELILHF 769

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A YGFNKSHAAAY  +++QTA++KT+YP EF+AA +T E  N +KI ++  + ++ +I I
Sbjct: 770  ASYGFNKSHAAAYTYVTFQTAYLKTYYPAEFMAALITSEETNADKISRYIDECKRLDIAI 829

Query: 817  MPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            +PPSVN    +F V    G + I Y L AIKGVG     +I+E  A   F  ++DF SRV
Sbjct: 830  LPPSVNKSAKEFSVVSEGGKDAIIYGLGAIKGVGGAAIENILEEQAKGEFKDIDDFVSRV 889

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D+ K+N++V ESL+ +G+ D FG +R  +L +LDNI +  +     + N  E++F  ++ 
Sbjct: 890  DNFKVNKKVFESLIKSGSFDSFGLTRKMMLNNLDNIVEACKNAATIKKNAAESLFGDDES 949

Query: 933  TFSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
              + K +L    S      + + E   +G Y SGHPLD Y+  + K+     ++      
Sbjct: 950  MATVKTSLVRDDSELELKTKLKFELESVGIYLSGHPLDEYREQISKIKYTLSDKFDELPE 1009

Query: 992  GNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
               + L   + +   + ++K G ++G +   +     E   F
Sbjct: 1010 NGEMLLVGKIENLTTRISKKNGKKMGTIEMLDLYGTVEIAVF 1051



 Score = 44.8 bits (104), Expect = 0.089,   Method: Composition-based stats.
 Identities = 8/69 (11%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEP 1023
             HPL+ +K  + ++     ++     + + I +   +    +  ++K G     ++  + 
Sbjct: 1102 SHPLEKFKEQIEQIKHTPSKDFGKIDKTSEILVVGKISEAAKIVSKKTGREFMMLSIMDL 1161

Query: 1024 AKEYEANFF 1032
               ++   F
Sbjct: 1162 FSTFKVAAF 1170


>gi|260655562|ref|ZP_05861050.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1]
 gi|260630010|gb|EEX48204.1| DNA polymerase III, alpha subunit [Jonquetella anthropi E3_33 E1]
          Length = 1140

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1038 (36%), Positives = 596/1038 (57%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +E    FVHL VH+ YSLL+GA+   ++  + A   QPA+A+TD   ++ A+EF Q   +
Sbjct: 1    MEHP--FVHLHVHTEYSLLDGAIRCGDLAARTAQWHQPAVAMTDHGVMYGAVEFFQACKS 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIGC++ +  +       +          ++LL    EGY  L++LVS     D 
Sbjct: 59   AGVKPIIGCEMYVAPEGIQSREKRS-------HHLILLAKDDEGYHNLVKLVSIANT-DG 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 RI    L    ++GLI  +   +G +           A +    ++ + G +  Y
Sbjct: 111  FYYKPRIDHDLLARY-SKGLIASSACLAGEVSSLLLAGEDGRAFETAQLYRDIMGPENYY 169

Query: 184  VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +  +   ++      +V++A  +  PL+ATN+S +L+ ED++ H++L+ V  +  ++ 
Sbjct: 170  LEIMSNTLPEQVAANKLLVEMARRNGFPLIATNDSHYLNPEDFDWHELLLCVGTNKTIND 229

Query: 243  KDRPRVTPDHYL--KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              R     + +             +++P+AL NTVEIA RCSF  ++        + K  
Sbjct: 230  PGRMSFEVNDFYLRSPEEMWNFFGAEVPDALTNTVEIAERCSFEFKLKTGHYS--LPKFD 287

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  ++ L   A AGLE RL       G    +Y QRL +EL +I++M FSGYFLI+
Sbjct: 288  VPEGETLDSFLAKGARAGLEKRLG------GVIPPEYEQRLQYELGIISQMGFSGYFLII 341

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            AD IQ  K  +IP+GPGRGS AGS+ AYA+ IT++DPLRF L+FERFLNP+R+SMPD D 
Sbjct: 342  ADVIQACKNRHIPIGPGRGSAAGSLVAYAMRITELDPLRFGLIFERFLNPERISMPDIDT 401

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D     R+ +IRYV +KYG E V+QIITFG +++KAA++DVGRA+ +PY+ VD++ KL+P
Sbjct: 402  DVSDKGREALIRYVIDKYGVENVSQIITFGRMKSKAAIKDVGRAMGLPYADVDKVAKLVP 461

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                     +AI      +     DP V  LL+ + K+EGL RH S HAAG+VI   PL+
Sbjct: 462  --DGVKSIAEAIEQTPDLKSLNDEDPQVAELLDSASKMEGLARHCSQHAAGVVITPMPLT 519

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLS 599
             +VP+ +    +  VTQF+M+ +E  GL+K DFLGL+TL++L+ +L+ + +     V+L 
Sbjct: 520  DVVPVRKIG-ENQVVTQFSMEPVENLGLVKMDFLGLQTLSILEDALENIRENGKGNVNLE 578

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD E + LL    TLGIFQLES GMR+ +  M PD   D++A+++LYRPGP+++ +
Sbjct: 579  EIPLDDPEVFKLLQNADTLGIFQLESPGMRRLIRRMVPDSFNDLVAILALYRPGPLESGM 638

Query: 660  VYNNRKNGKEK-IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
            V         + +  +HP ++P+LKET GV++YQEQVM+ A +L+GY+L  AD+LRRAMG
Sbjct: 639  VDQYVDCKHGERVHYLHPKLEPVLKETYGVVLYQEQVMKCASVLAGYTLGGADLLRRAMG 698

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  E M++Q+  F+ GA KNGI K  A NIF+++ KFA YGFNKSH+AAYA+ISYQTAW
Sbjct: 699  KKKIEVMNQQRAIFVEGALKNGIDKNSAENIFDIIQKFAGYGFNKSHSAAYALISYQTAW 758

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIK-KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            +KTHYP EF+AA +T ++   + +   + ++ R   I ++ P +N     F      I +
Sbjct: 759  LKTHYPKEFMAAYLTSKIGAKKDVMASYVKEVRSSGIDVLAPDINESRSSFTAAGEVIRF 818

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L A+  +G      I+E+     PF  + DF +RVD + +N+  LESL+ AGA DCF  
Sbjct: 819  GLGAVSRMGENAVSAILESRKAGGPFKDMWDFVTRVDLRHVNKAALESLIKAGAFDCFST 878

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R QLL++   +   A  +  +  +   ++F        D++ L     ++   R   E+
Sbjct: 879  NRRQLLEAASPMVDAASRLHVD--DGQASLFGDLSSL--DRVELPDVPDDDLETRLAMEK 934

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL-AAMVVSKQQKKTRKGSRI 1015
             V+G Y SGHP+D ++ +++        +       +   + A ++   +++ T++G  +
Sbjct: 935  EVIGMYISGHPIDQFREVIQGQVNATASDLAHWHSQSVAPVFAGLLTEWKERITKRGDAM 994

Query: 1016 GWVTFSEPAKEYEANFFP 1033
            G +   +  +E E   FP
Sbjct: 995  GVLRLDDGEREVEVVCFP 1012


>gi|15639656|ref|NP_219106.1| DNA polymerase III subunit alpha [Treponema pallidum subsp. pallidum
            str. Nichols]
 gi|189025894|ref|YP_001933666.1| DNA polymerase III subunit alpha [Treponema pallidum subsp. pallidum
            SS14]
 gi|6014994|sp|O83675|DPO3A_TREPA RecName: Full=DNA polymerase III subunit alpha
 gi|3322971|gb|AAC26567.1| DNA polymerase III, subunit alpha (dnaE) [Treponema pallidum subsp.
            pallidum str. Nichols]
 gi|189018469|gb|ACD71087.1| DNA polymerase III, subunit alpha [Treponema pallidum subsp. pallidum
            SS14]
 gi|291060035|gb|ADD72770.1| DNA polymerase III subunit alpha [Treponema pallidum subsp. pallidum
            str. Chicago]
          Length = 1170

 Score =  765 bits (1975), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1036 (37%), Positives = 580/1036 (55%), Gaps = 25/1036 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +  SFVHL VHS+YSLL+GA SL  ++    +  Q A+A+TD  N+F AL F +   A
Sbjct: 1    MARM-SFVHLHVHSNYSLLDGASSLQRLVRTAKSLGQEALALTDHGNMFGALHFQKVCSA 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+ IIGC+L +  +     +    T       +++L     GY+ L+ L S+ Y+ + 
Sbjct: 60   EGIKAIIGCELYVAPESRFDRSE--HTIGRRYYHLIVLAKNETGYRNLMVLSSKAYI-EG 116

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 R+    L +   EGLI L+   +G +         + AE+    ++ LFG D  +
Sbjct: 117  MYYKPRVDDELLAQ-HAEGLICLSSCLAGQLPYLLLQGRKREAEEHARKYRALFGVDNYF 175

Query: 184  VNLQRHRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H   +  + +  +++LA    +PLV TN+  +  +ED  A D+L+ +      S 
Sbjct: 176  IEVQDHGLDEEKKVAPLLIELACRLGIPLVVTNDVHYAEQEDSVAQDILLCIGTKKNRSD 235

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             +R +  T + YLK+  +M  +F   PE + NTV IA+RC+  +    P+LP +      
Sbjct: 236  PNRLKFKTDEFYLKSSEKMAQLFPHYPEMVLNTVRIAQRCNVRIPQPGPLLPLYQIPHEF 295

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              +   E+ +R+    GL              +++ + R D+EL+VI RM F GYFLIV 
Sbjct: 296  SSK---EHYIRHLVHRGLY-------DRYAVVSEEIKARADYELDVIVRMDFVGYFLIVW 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK+++IPVGPGRGSGA S+ AYAL ITDIDPLR+ LLFERF+NP+R+SMPDFDID
Sbjct: 346  DFITWAKEHDIPVGPGRGSGASSIVAYALKITDIDPLRYKLLFERFMNPERISMPDFDID 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RR EVI YV+ +YG++ V QIITFG+L+ KAA+RDVGR L +P S+V  + KL+P+
Sbjct: 406  FCFERRQEVIEYVRARYGNDNVGQIITFGTLKPKAAIRDVGRVLDIPLSEVLMITKLMPD 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP         A +S        +P    L +I++KLE   R+ S HAAGIVIG   L+ 
Sbjct: 466  DPKLTFKK---AYESEQLAQMKQEPRYAELFQIAEKLEDTNRNTSLHAAGIVIGKTALTD 522

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVDL 598
             VP+Y+D ++    TQF M  IE  GL+K DFLGLKTLTL+Q++ + + ++        +
Sbjct: 523  YVPLYKDSKTGKISTQFGMDLIEDCGLVKMDFLGLKTLTLIQRTQNLVRRKGGKYTTFSI 582

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            S I   D  T+ +L    +  +FQ ES GM+  L+  +P  +ED+IAL +LYRPGP+  I
Sbjct: 583  SDISDQDPTTFSMLAEGKSAAVFQFESRGMQGILKRAKPSKMEDLIALNALYRPGPMAFI 642

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y   K    KI    P ++ +L ET GVI+YQEQVMQ+AQ ++G+SL EAD+LRRAMG
Sbjct: 643  DQYIESKRDPGKIKYPDPCLEDILSETYGVIVYQEQVMQVAQRIAGFSLGEADILRRAMG 702

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK    M ++K+ F   A K G  K  A NIFE+L  FA YGFNKSHA AY+V++YQTA+
Sbjct: 703  KKKLAVMQEKKKEFAERAEKQGFDKKHAENIFEILIPFAGYGFNKSHATAYSVVAYQTAF 762

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K ++P EF+AA+++ E+++ EK+  +  +A +  + I  P VN     F V +  I Y 
Sbjct: 763  LKANFPAEFMAANLSNEINSAEKLPLYMAEAEKMGLSIQKPDVNASEPYFSVCEGCIVYG 822

Query: 839  LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L  IKG+G   A  + +    + P+ S  +   RV +  LN++  E ++ AG  D FG +
Sbjct: 823  LLGIKGLGEQVAFDVFDERIRNGPYTSFVEVLDRVPATSLNKKNAEIMIKAGCFDRFGVT 882

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  L   LD+  KY    +   +++  ++F         + T       +   R   E+ 
Sbjct: 883  RASLTAHLDDAMKYVARKKAVTSSRQASLFDETDLGECSEYTFPVMEEWSQRERLRIEKE 942

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            ++G+Y SGHPLD Y+ ++ +               N   +  ++ +     T+ G  + +
Sbjct: 943  LMGYYISGHPLDEYRSVIGEKATLDLGHIENARSENKYLIVGVLNAIHPYTTKSGKNMAF 1002

Query: 1018 VTFSEPAKEYEANFFP 1033
             +F +     +   FP
Sbjct: 1003 GSFEDLHGSVDIVVFP 1018


>gi|251791881|ref|YP_003006601.1| DNA polymerase III subunit alpha [Aggregatibacter aphrophilus NJ8700]
 gi|247533268|gb|ACS96514.1| DNA polymerase III subunit alpha [Aggregatibacter aphrophilus NJ8700]
          Length = 1158

 Score =  765 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1046 (38%), Positives = 597/1046 (57%), Gaps = 38/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHLQVHS +S+++G   +  ++     +   A+A+TD  N    + F  +A ++G
Sbjct: 2    SQPRFVHLQVHSDFSMIDGIAKVKPLVKACVENNMVAMALTDFTNFCGLVRFYGEALSSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG  + +          Q          + LL    EGY+ +  L+S+ Y      
Sbjct: 62   VKPIIGADVLV----------QSDLCGEERFRLTLLAKNNEGYKNITLLLSKAY-ERGYA 110

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E    G+I+L+GG +G + +    +++   +  +  +++ F D  Y+ L
Sbjct: 111  DVPYIDQQWLVE-HRTGVIVLSGGVNGDVGKKLLRSNTDELKSAVDFYREFFPDHFYLTL 169

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R     +       + LA   +LP+VATN+  FL E+D+EAH++ +A+     +    R
Sbjct: 170  TRTGRPDEEEYIQAALTLAEQTDLPVVATNDVCFLQEDDFEAHEIRVAIHDGYTLEDPKR 229

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  T   Y ++  EM  +F+D+P ALENT+ IA+RC+  +++       +   +     
Sbjct: 230  PKNYTGQQYFRSEQEMCDLFADVPSALENTLLIAQRCNVTIRLGE-----YFLPQFPTGD 284

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 285  LSTEDYLVKRAKEGLEERLKVLFPDEKVRTERRPEYDERLQVELDVINQMGFPGYFLIVM 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 345  EFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 405  FCMDGRDRVIEHVAEMYGRGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPP 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + + +E   AD  V  ++++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 465  DPGMTL-AKAFEAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITD 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R  K      
Sbjct: 524  FSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKPLV 583

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DDH+++ +L    T  +FQLES GM+  ++ ++PDC EDIIALV+L+RPGP+ 
Sbjct: 584  DINTIPLDDHQSFEVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQ 643

Query: 657  NIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V       +   +         H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 644  SGMVDNFIDRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGG 703

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 704  ADLLRRAMGKKKPEEMAKQRSVFEEGAIKNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAY 763

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT EMDN +KI     +  +  ++++PP +NT    F 
Sbjct: 764  ALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGLYDECMRMGLKVVPPDINTGKHHFS 823

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V +N  I Y + AIKGVG      ++EA   D  F +L D C+RVD KK+NRR  ESL+ 
Sbjct: 824  VNENGEIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIK 883

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946
            +GA D  G  R  L ++L++  + +    K+      ++F     T  + + +    +  
Sbjct: 884  SGAFDKLGPHRAALQRNLEDALRASDQHAKDEALGQTDMFGVLTETNEEVEHSYANIAPW 943

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                  + E+  LG Y S HP+  Y   L        +E     RG     + +VV+ + 
Sbjct: 944  TEKTILDGERETLGLYLSSHPVSRYLKELSHYSPVRLKELTPNYRGQMSTASGLVVNTRI 1003

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T+KG+ IG  T  + +   +   F
Sbjct: 1004 AVTKKGNHIGIATIDDRSGRLDLTLF 1029


>gi|238918790|ref|YP_002932304.1| DNA polymerase III subunit alpha [Edwardsiella ictaluri 93-146]
 gi|238868358|gb|ACR68069.1| DNA polymerase III subunit alpha [Edwardsiella ictaluri 93-146]
          Length = 1162

 Score =  765 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1051 (38%), Positives = 603/1051 (57%), Gaps = 41/1051 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL VHS YS+++G      ++ K+AA   PA AITD  NL   ++F   A  
Sbjct: 1    MAE-PRFIHLHVHSDYSMIDGLAKTAPLVKKVAALGMPAFAITDHTNLCGLVKFYGSAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+P++G  + +          + +T    + ++ LL    +GYQ L +L+S  Y    
Sbjct: 60   AGIKPLVGADVLV----------RSETMGDELSALTLLACDNQGYQNLTQLISHAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G +   I   WL      GLI+L+G   G + +     +  +A + +  +++ F D  ++
Sbjct: 110  GAEGPTIDRDWLIAYRA-GLILLSGARQGDVGKLLLRGNQTLAGECVDFYQRHFPDSYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA   +LPLVATN+  FL   D++AH++ +A+     +   
Sbjct: 169  ELVRTGRPDEESYLHLAVELAQQRDLPLVATNDVRFLETSDFDAHEIRVAIHDGYTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +   Y+++  EM  +F+DLPEAL+N+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSAQQYMRSEEEMCELFADLPEALQNSVEIAKRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E  L  KA  GLE     L      +      Y +RL+ EL VI +M F GYFLI
Sbjct: 284  GEMTTEAFLVKKAHEGLEERLTFLFPDEADRARLRPPYDERLEIELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYSLKITDLDPLAFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V + YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDRVIDHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R     L 
Sbjct: 523  TDFAPLYCDAEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRACQGLE 582

Query: 600  L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                  IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PVDIAAIPLDDQKSFDILQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  + P+L+ T GVI+YQEQVMQIAQ+L+GYSL
Sbjct: 643  LQSGMVDNFIDRKHGREELSYPDREWQHESLKPVLEPTYGVILYQEQVMQIAQVLAGYSL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NG++  +A++IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRSVFEEGARNNGVNGELAMHIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGQYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS---ADKPFDSLEDFCSRVDSKKLNRRVLE 883
            F V D   I Y + AIKGVG      I+EA        F  L D C+R D+KKLNRR++E
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARTDTKKLNRRMME 882

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEK 942
             L+ +GA D  G  R  L+ SL +  K A+   +       ++F    +     + +   
Sbjct: 883  KLIMSGAFDRLGPHRAALMSSLSDALKAAEQHARAEAIGQVDMFGVLAEEPEQVEQSYGS 942

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMV 1001
                 + +  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +V
Sbjct: 943  VPPWPAQMVLDGERETLGLYLTGHPITQYLKEIERYAGGGRLKDMHPTDRGKMTTAVGLV 1002

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  +   T++G+RIG  T  + +   E   F
Sbjct: 1003 LGARVMTTKRGNRIGMCTLDDRSGRLEVMLF 1033


>gi|329120922|ref|ZP_08249554.1| DNA-directed DNA polymerase III alpha subunit [Dialister
            micraerophilus DSM 19965]
 gi|327471381|gb|EGF16832.1| DNA-directed DNA polymerase III alpha subunit [Dialister
            micraerophilus DSM 19965]
          Length = 1138

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1032 (36%), Positives = 571/1032 (55%), Gaps = 28/1032 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YSL +G   +  ++  +    Q AIAITD   ++ A+   ++    GI+P
Sbjct: 3    SFVHLHSHTEYSLFDGISRIKELVSYVKELGQQAIAITDHGAMYGAVYLYKECMKQGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +      K  N  K     +  ++LL    EGYQ LI++ S+ + ++      
Sbjct: 63   IIGCELYVTADSRFKKGNAFK---EKLGHLILLAENNEGYQNLIKICSKAW-VEGYYVKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L++  ++G+I LT    G I +A      + A K    +   FG +  ++ LQ 
Sbjct: 119  RVDHDLLRKY-SKGIIALTSCIGGEIPQAILNGDKEKARKLTEFYIDTFGRNNFFLELQN 177

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +     Q +  +A  + L LVATN+  ++ +ED ++H++ + ++    +   +   
Sbjct: 178  HGMPEEAIVRQELSLIAKEYNLGLVATNDFHYVRKEDAKSHEIKLCISTGNTLDNPNHFA 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + Y K+  EM S+  + P A+ENT  IA RC+  L      LP +     +     
Sbjct: 238  FANNEFYCKSGEEMKSLLGEFPGAIENTKIIAERCNVKLTFGKHKLPSYDVPCGE----T 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR      L  R                 RL++ELN+I +M FS YFLIV DFI++
Sbjct: 294  AATYLRKLCFDALPKRYPHFN-------DKEESRLNYELNIINQMGFSDYFLIVMDFIRY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IP+GPGRGS AGS+ AY L IT+IDPLRF LLFERFLNP+R+SMPD D D C  R
Sbjct: 347  AKNKGIPIGPGRGSAAGSIVAYLLDITEIDPLRFDLLFERFLNPERVSMPDIDTDLCYRR 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R E+I Y+++KYG E+VAQIITFG+L A+A +RDVGR + +P  +VDR+ K+IP  P   
Sbjct: 407  RGEIIEYLKSKYGEEQVAQIITFGTLAARAVIRDVGRVMSIPLKEVDRIAKMIPGGPGVT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +    +     F      + +V  L++   KLEGL R + THAAG+VI  +P+ + VP+ 
Sbjct: 467  LK-STLESSRDFLNEYENNNTVRTLVDHCIKLEGLSRQSGTHAAGVVICSKPVYEYVPIQ 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
               + D   TQ+     E+ GL+K D LGL+ LT++  +L  + + RG+ V +S I   D
Sbjct: 526  L-TQDDFIQTQYEKDLDEELGLLKMDLLGLRNLTVIHDTLQMIKENRGITVKMSEIDDSD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
             +T ++L    T+G+FQ ES G    L  + P+  ED+I +V+LYRPGP+ + +   + N
Sbjct: 585  AKTCNMLCMGDTVGVFQSESDGFTNLLMQLHPERFEDLIPMVALYRPGPLGSGMAEDFIN 644

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+GK K+   HP ++ +LKET GVI+YQEQVMQIA  + G++L ++D+LRRAMG K  E
Sbjct: 645  RKHGKTKVDYPHPSLEKILKETYGVILYQEQVMQIASEMGGFTLGQSDLLRRAMGHKEPE 704

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  Q+E F+ GA   GI K+I+ ++F+L+  FA YGFNKSH+  Y  I+++TA++K ++
Sbjct: 705  ILQAQRELFVKGAEGKGIDKSISNHVFDLMVHFAGYGFNKSHSVCYGRIAWETAYLKANF 764

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
              EF+A+ MT  + ++ K+ ++ ++ R+  I+++ P +N     F V    I + L+ I+
Sbjct: 765  RPEFMASMMTCYIGDINKVNRYIENTRKAGIKVLAPDINKSQAYFSVKGENIIFGLSGIQ 824

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG     HI+E+      F  L D   R+DSK LN R  ESL+  GALDCFGY R QLL
Sbjct: 825  NVGENAVNHIIESRNKKGDFKDLIDLLERIDSKILNSRACESLIKCGALDCFGYDRSQLL 884

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              LD+    A     +R    +N+FA  +     +I        +   +   E+++LGFY
Sbjct: 885  AVLDDAINIAASGRFDRDAGQQNLFAESE--IIREIDYPDIEPMSKKEKLHWEKKLLGFY 942

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVAT-IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             SGHPLD Y  ++         ++      G  + +  +V   ++  T+KG  +G+ T  
Sbjct: 943  VSGHPLDEYSDMIESFVKSKVFDNNDIDYDGRIVTMCGIVTRVKKTITKKGLSMGYATLE 1002

Query: 1022 EPAKEYEANFFP 1033
            +   E+E   FP
Sbjct: 1003 DYDGEFECVIFP 1014


>gi|238018709|ref|ZP_04599135.1| hypothetical protein VEIDISOL_00553 [Veillonella dispar ATCC 17748]
 gi|237865180|gb|EEP66470.1| hypothetical protein VEIDISOL_00553 [Veillonella dispar ATCC 17748]
          Length = 1135

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1031 (35%), Positives = 602/1031 (58%), Gaps = 27/1031 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ +SLL+G   L +++ +     QPA+AITD  N+++A+ F ++  + GI+PI
Sbjct: 4    FVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECVSQGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +     L    Q       +  ++LL  T EGY+ L+++VS+    +      R
Sbjct: 64   IGCEVYVTEGSRLDK--QEGRSRERLKHLILLAETMEGYRNLVKIVSKAST-EGFNYKPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 L++  ++G+I L+    G I +    ++ + A++ +  + + +G D  ++ +Q H
Sbjct: 121  ADRDLLRQY-SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEIQNH 179

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +  + + ++++L+  + L +VA+N+  ++ +ED +A D+ + ++     ++ DR + 
Sbjct: 180  GLPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDRLKF 239

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + YLK+  EM  +F  +P A+ENT++IA RC+         LP F   E +      
Sbjct: 240  PNDEFYLKSGDEMAELFGHIPGAMENTLKIADRCNVEFNFDEHHLPHFDVPEGE----TS 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR            +     G  +++ ++RLD+EL+VI  M F  YFLIV D++++A
Sbjct: 296  KTYLRKVCER-------EIPRLYGETSEELQKRLDYELDVIGTMGFEDYFLIVWDYVRYA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++R
Sbjct: 349  REHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFCYEKR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             + I YV  KYG ERV+QIITFG+  A+A +RDVGR L +P ++V+R+ K+IPN+    +
Sbjct: 409  GQAIEYVTRKYGQERVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELGITL 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                       +    ADP+V  L +  +KLEG+ R++STHAAG+VI   PL   VP+  
Sbjct: 469  DKAL--QGKELKALYEADPNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHVPVQN 526

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
                   VTQ++   IE+ GL+K DFLGL+TLT++  +L  +   RG+ +DL  IP DD 
Sbjct: 527  ANDDGF-VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDDK 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664
                +LT   T G+FQLES G+ + +  ++P+  ED+I LV+LYRPGP+ + +   + +R
Sbjct: 586  AACDILTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFIDR 645

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++GK+++  +HP+++P+LK+T GVI+YQEQVMQIA  + G+SL +AD++RRAMGKK +  
Sbjct: 646  RHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKESV 705

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +  Q+E FI G+  NGI ++IA  +F+LL  FA YGFNKSH+AAYA I+YQTA++K HY 
Sbjct: 706  LKAQRESFIQGSINNGIEESIANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKAHYF 765

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EF+AA+MT  M N++K+  +    ++ N++++ P +N     F V  + I + L  IK 
Sbjct: 766  PEFMAATMTSFMQNMQKLTYYINACKKHNVKVLGPDINYSERSFAVQGDAIRFGLGGIKN 825

Query: 845  VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG      ++        +  + DFC RVD+K +N+R+LESL+  GA+D F  +R QLL 
Sbjct: 826  VGDNAIDRLIRERNEHGLYTDIVDFCKRVDNKVVNKRLLESLIRCGAMDGFKENRNQLLH 885

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
              ++ Q      +K+      ++F   + +  D I +      +   + ++E+   GFY 
Sbjct: 886  MYESAQAVGAKEQKDAAMGTMSLFGDIEESV-DFIPVPNVEDLSEDDKLKDEKEYTGFYI 944

Query: 964  SGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            +GHPL  Y   L  +  +    E+     G  I    ++ +K  + TR+   +  +   +
Sbjct: 945  TGHPLQGYAKELEGLFELGALVENPEQYDGQTITFGGLIENKTDRMTRRNEVMSILRIED 1004

Query: 1023 PAKEYEANFFP 1033
             +       FP
Sbjct: 1005 YSGAANVVAFP 1015


>gi|313892071|ref|ZP_07825669.1| putative DNA polymerase III subunit alpha [Dialister microaerophilus
            UPII 345-E]
 gi|313119523|gb|EFR42717.1| putative DNA polymerase III subunit alpha [Dialister microaerophilus
            UPII 345-E]
          Length = 1138

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1032 (36%), Positives = 570/1032 (55%), Gaps = 28/1032 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YSL +G   +  ++  +    Q AIAITD   ++ A+   ++    GI+P
Sbjct: 3    SFVHLHSHTEYSLFDGISRIKELVSYVKELGQQAIAITDHGAMYGAVYLYKECMKQGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+L +      K  N  K     +  ++LL    EGYQ LI++ S+ + ++      
Sbjct: 63   IIGCELYVTADSRFKKGNAFK---EKLGHLILLAENNEGYQNLIKICSKAW-VEGYYVKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L++  ++G+I LT    G I +A      + A K    +   FG +  ++ LQ 
Sbjct: 119  RVDHDLLRKY-SKGIIALTSCIGGEIPQAILNGDKEKARKLTEFYIDTFGRNNFFLELQN 177

Query: 189  HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +     Q +  +A  + L LVATN+  ++ +ED ++H++ + ++    +   +   
Sbjct: 178  HGMPEEAIVRQELSLIAKEYNLGLVATNDFHYVRKEDAKSHEIKLCISTGNTLDNPNHFA 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + Y K+  EM S+  + P A+ENT  IA RC+  L      LP +     +     
Sbjct: 238  FANNEFYCKSGEEMKSLLGEFPGAIENTKIIAERCNVKLTFGKHKLPSYDVPCGE----T 293

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR      L  R                 RL++ELN+I +M FS YFLIV DFI++
Sbjct: 294  AATYLRKLCFDALPKRYPHFN-------DKEESRLNYELNIINQMGFSDYFLIVMDFIRY 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IP+GPGRGS AGS+ AY L IT+IDPLRF LLFERFLNP+R+SMPD D D C  R
Sbjct: 347  AKNKGIPIGPGRGSAAGSIVAYLLDITEIDPLRFDLLFERFLNPERVSMPDIDTDLCYRR 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R E+I Y+++KYG E+VAQIITFG+L A+A +RDVGR + +P  +VDR+ K+IP  P   
Sbjct: 407  RGEIIEYLKSKYGEEQVAQIITFGTLAARAVIRDVGRVMSIPLKEVDRIAKMIPGGPGVT 466

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +    +     F      + +V  L+E   KLEGL R + THAAG+VI  +P+ + VP+ 
Sbjct: 467  LK-STLESSRDFLNEYENNNTVRTLVEHCIKLEGLSRQSGTHAAGVVICSKPVYEYVPIQ 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
               + D   TQ+     E+ GL+K D LGL+ LT++  +L  + + RG+ V +  I   D
Sbjct: 526  L-TQDDFIQTQYEKDLDEELGLLKMDLLGLRNLTVIHDTLQMIKENRGITVKMYEIDDSD 584

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
             +T ++L    T+G+FQ ES G    L  + P+  ED+I +V+LYRPGP+ + +   + N
Sbjct: 585  AKTCNMLCMGDTVGVFQSESDGFTNLLMQLHPERFEDLIPMVALYRPGPLGSGMAEDFIN 644

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+GK K+   HP ++ +LKET GVI+YQEQVMQIA  + G++L ++D+LRRAMG K  E
Sbjct: 645  RKHGKTKVDYPHPSLEKILKETYGVILYQEQVMQIASEMGGFTLGQSDLLRRAMGHKEPE 704

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +  Q+E F+ GA   GI K+I+ ++F+L+  FA YGFNKSH+  Y  I+++TA++K ++
Sbjct: 705  ILQAQRELFVKGAEGKGIDKSISNHVFDLMVHFAGYGFNKSHSVCYGRIAWETAYLKANF 764

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
              EF+A+ MT  + ++ K+ ++ ++ R+  I+++ P +N     F V    I + L+ I+
Sbjct: 765  RPEFMASMMTCYIGDINKVNRYIENTRKAGIKVLAPDINKSQAYFSVKGENIIFGLSGIQ 824

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             VG     HI+E+      F  L D   R+DSK LN R  ESL+  GALDCFGY R QLL
Sbjct: 825  NVGENAVNHIIESRNKKGDFKDLIDLLERIDSKILNSRACESLIKCGALDCFGYDRSQLL 884

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              LD+    A     +R    +N+FA  +     +I        +   +   E+++LGFY
Sbjct: 885  AVLDDAINIAASGRFDRDAGQQNLFAESE--IIREIDYPDIEPMSKKEKLHWEKKLLGFY 942

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVAT-IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             SGHPLD Y  ++         ++      G  + +  +V   ++  T+KG  +G+ T  
Sbjct: 943  VSGHPLDEYSDMIESFVKSKVFDNNDIDYDGRIVTMCGIVTRVKKTITKKGLSMGYATLE 1002

Query: 1022 EPAKEYEANFFP 1033
            +   E+E   FP
Sbjct: 1003 DYDGEFECVIFP 1014


>gi|253581934|ref|ZP_04859158.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium
            ATCC 27725]
 gi|251836283|gb|EES64820.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium
            ATCC 27725]
          Length = 1138

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/1033 (37%), Positives = 593/1033 (57%), Gaps = 32/1033 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ YSLL+G   +++ LD+  A    AIAITD  NLF  LEF +KA   GI+PI
Sbjct: 5    FVHLHLHTEYSLLDGVGKIDDYLDRTKALNMQAIAITDHGNLFGVLEFYKKAIKKGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +     L+           +  +VLL    +GYQ L+++ S  Y+        R
Sbjct: 65   IGLEAYVSEFSMLEKE-------GRIFHLVLLAENNKGYQNLLKISSESYIKG-FYYKPR 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            I   +L ++ +EG+I L+    G I R    N S +  ++ +  +  +FG D  Y+ +Q 
Sbjct: 117  IDKEFL-KMHSEGIIALSACMQGEIPRRILDNESEEKVDEIVNEYVDIFGKDNFYIEVQA 175

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +    +     ++  LA  H+L +VATN++ +++E ++   D+L+ V     V+ + R R
Sbjct: 176  NGVKGQTALNEKLYNLAQKHQLKMVATNDTHYVNEGEHTLQDILICVQTGAKVADEKRMR 235

Query: 248  VTPDHYL--KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  D          +  + +   EA+ NT+EIA RC+  ++      P +    C    K
Sbjct: 236  IETDELFLKSREQIIDGLGAKYLEAVNNTIEIAERCNVNIEFGKFKFPEYEIPSC---VK 292

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E  LR     GL  R   G            +R+++EL+VI +M ++ YF++V DFI 
Sbjct: 293  TIEEFLRKLVYFGLSKRYPHGLTIS------VLERVEYELSVIEKMGYAAYFVVVWDFID 346

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK+N IP+GPGRGS AGS+ AYAL IT++DPL ++L+FERFLNP+R+SMPD DID CQ+
Sbjct: 347  YAKRNRIPIGPGRGSAAGSLVAYALRITELDPLDYNLIFERFLNPERISMPDIDIDICQE 406

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV  KYG ++VAQIITFG+++A+AA+RDVGR +  P S+VD + KL+P +   
Sbjct: 407  RRQEVIEYVIRKYGEDKVAQIITFGTMKARAAIRDVGRVMDTPLSKVDSIAKLVPFNATI 466

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                Q + +   F+   L DP + ++++IS +LE   RHAS HAAGIVI   PL+  VP+
Sbjct: 467  ---QQTLNNVEEFKNMYLNDPEIQKVIDISARLENKVRHASIHAAGIVITKDPLTDTVPL 523

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
            Y D ++ +  TQ+ MK +E  GL+K DFLGL+ LT LQ+++D++ +  G  ++LS IP +
Sbjct: 524  YSDNKNKVVSTQYQMKELEDLGLLKMDFLGLRNLTNLQRTIDYIKEDLGEDIELSEIPLN 583

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
              + Y +L+   T G+FQ+ES G+R+ L  ++PD  EDIIAL++LYRPGP+ + +V +  
Sbjct: 584  SKKVYEMLSRGDTSGVFQMESQGIRKILLKLKPDRFEDIIALLALYRPGPLGSGMVDDFI 643

Query: 665  KNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
                   +I   HP ++  LKET GVI+YQEQVM+IA +++ YSL EAD+LRRAMGKK  
Sbjct: 644  NGKNGTSEIKYPHPSLELTLKETYGVILYQEQVMKIANIMANYSLGEADLLRRAMGKKNI 703

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + M++ +E+F+  +  NG +K  A+ +FEL+ KFA YGFNKSH+AAYA+I+Y TA+ K +
Sbjct: 704  QIMEENREKFVERSMANGYTKEKAIEMFELIDKFAGYGFNKSHSAAYALIAYWTAYFKAY 763

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            Y   + A+ MT EM +VE I  + +DA+  N+++  P VN     F V    I +SLAAI
Sbjct: 764  YMKHYYASLMTSEMSHVEDIAFYMEDAKVHNLKLHLPDVNRASPKFIVDKEGIIFSLAAI 823

Query: 843  KGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K VG   +  I+E  + +  + + EDF  R     LN++ LESL+ AGALD    +R Q 
Sbjct: 824  KNVGEGVSGKILEECNENGKYKNFEDFVVRTRKHGLNKKALESLILAGALDGLPGNRRQK 883

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             +S+D I  YA    K    +  N+F   K +     TL +    +       E+  LGF
Sbjct: 884  FESVDKILDYATRKIKEDEIQQMNLFGEAKSSLGV-FTLPQIPEYSLEELLAREKEYLGF 942

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTF 1020
            YFS HPLD Y+ ++    +    E          R   ++   ++  T+K G  +     
Sbjct: 943  YFSAHPLDNYRRLIEVYRLSRIAELKEEKNVQIFRTCGILREIKKIVTKKTGQIMCLFEL 1002

Query: 1021 SEPAKEYEANFFP 1033
             +   +     FP
Sbjct: 1003 EDYYDKINCIVFP 1015


>gi|315633674|ref|ZP_07888964.1| DNA-directed DNA polymerase III alpha subunit [Aggregatibacter segnis
            ATCC 33393]
 gi|315477716|gb|EFU68458.1| DNA-directed DNA polymerase III alpha subunit [Aggregatibacter segnis
            ATCC 33393]
          Length = 1172

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1046 (38%), Positives = 595/1046 (56%), Gaps = 38/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHLQVHS +S+++G   +  ++     +   A+ +TD  N    + F  +A ++G
Sbjct: 16   SPPRFVHLQVHSDFSMIDGIAKVKPLVKACVENNMVAMGLTDFTNFCGLVRFYGEALSSG 75

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG  + +          Q +        + LL    EGY+ +  L+S+ Y      
Sbjct: 76   VKPIIGADVLV----------QNELCGEERFRLTLLAKNNEGYKNITLLLSKAY-ERGYA 124

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E    G+I+L+GG +G + +    +++   +  +  + + F D  Y+ L
Sbjct: 125  DVPYIDQQWLVE-HRAGVIVLSGGVNGDVGKKLLRSNTDELKSAVDFYHEFFPDHFYLTL 183

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D        ++LA   +LP+VATN+  FL  ED+EAH++ +A+     +    R
Sbjct: 184  TRTGRPDEEHYIQAALELAEREQLPVVATNDVCFLQAEDFEAHEIRVAIHDGFTLDDPKR 243

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  T   Y ++  EM  +F+D+P ALENT+ IA+RC+  +++       +   +     
Sbjct: 244  PKNYTSQQYFRSEQEMCDLFADVPSALENTLLIAQRCNVTIRLGE-----YFLPKFPTGD 298

Query: 305  KEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE     L      +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 299  LSTEDYLVKRAREGLEARLKVLFPDENERAARRAEYDERLQVELDVINQMGFPGYFLIVM 358

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 359  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 418

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 419  FCMDGRDRVIEHVAEMYGRGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPP 478

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + + +E   AD  V  ++++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 479  DPGMTL-AKAFEAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITD 537

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R  K      
Sbjct: 538  FSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKPLV 597

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DDH+++ +L    T  +FQLES GM+  ++ ++PDC EDIIALV+L+RPGP+ 
Sbjct: 598  DINTIPLDDHQSFEVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQ 657

Query: 657  NIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V       +   +         H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 658  SGMVDNFIDRKHGREEVSYPDANYQHETLKPILEPTYGIILYQEQVMQIAQVLAGYTLGG 717

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +++ IF+L+ KFA YGFNKSH+AAY
Sbjct: 718  ADLLRRAMGKKKPEEMAKQRSVFEEGAIKNGIDGDLSMKIFDLVEKFAGYGFNKSHSAAY 777

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT EMDN +KI     +  +  ++++PP +NT    F 
Sbjct: 778  ALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGLYDECMRMGLKVVPPDINTGKHHFS 837

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V +N  I Y + AIKGVG      ++EA   D  F +L D C+RVD KK+NRR  ESL+ 
Sbjct: 838  VNENGEIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIK 897

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946
            +GA D  G  R  L Q+L++  + +    K+      ++F     T  + + +    +  
Sbjct: 898  SGAFDKLGPHRAALQQNLEDALRASDQHAKDEALGQTDMFGVLTETNEEVEHSYANIAPW 957

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                  + E+  LG Y S HP+  Y   L        +E     RG     + +VV+ + 
Sbjct: 958  TEKTILDGERETLGLYLSSHPVSRYLKELSHYSPMRLKELTPNYRGQMSTASGLVVNTRI 1017

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T+KG+ IG  T  + +   +   F
Sbjct: 1018 AVTKKGNHIGIATIDDRSGRLDLTLF 1043


>gi|157413280|ref|YP_001484146.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT
            9215]
 gi|157387855|gb|ABV50560.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT
            9215]
          Length = 1165

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1043 (36%), Positives = 597/1043 (57%), Gaps = 28/1043 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L  HS YSLL+GA  ++ I+D+ +     +IA+TD   ++  L+  +K     I+PI
Sbjct: 3    FVPLHNHSDYSLLDGASQISKIVDRASDLGMESIALTDHGVMYGVLDLVKKCKEKNIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ--- 127
            IG ++ +          +          +V+L     GY+ L++L +  +L     +   
Sbjct: 63   IGNEMYVINGSIDDPQPK----KEKRYHLVVLAKNYTGYKNLVKLTTISHLNGMRGRGIF 118

Query: 128  -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  S L +  ++GLI+ T    G I +A       VAE   + +KK+F D  Y+ +
Sbjct: 119  SRPCIDKSLLSKY-SDGLIVSTACLGGEIPQAILKGRLDVAEDIAIWYKKIFSDDFYLEI 177

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    DR    +++++   H++ ++ATN++ +LS  D EAHD L+ V    ++S + R
Sbjct: 178  QDHGSIEDRIVNVELIKIGKKHQIKVIATNDAHYLSNMDVEAHDALLCVLTGKLISDEKR 237

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R T   Y+K+ +EM+ +F D  +  ++   V      S  ++V        + K   + 
Sbjct: 238  LRYTGTEYIKSENEMLELFKDHIDDVSINEAVNNTVEISQKVEVFDLFGNYRMPKFPLNE 297

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              +  + L   +  GL  RL +         + Y++RL  EL +I  M F  YFL+V D+
Sbjct: 298  DTDSFSLLTQLSNEGLLKRLKKNNFT--EVDESYKKRLSTELKIIKDMGFPDYFLVVWDY 355

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++A+ N+IPVGPGRGS AGS+ AY+L IT+IDP+   LLFERFLNP R SMPD D DFC
Sbjct: 356  IKFARDNSIPVGPGRGSAAGSLVAYSLQITNIDPVEHGLLFERFLNPARKSMPDIDTDFC 415

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRR+EVI YV N+YG ++VAQIITF  + +KA L+DV R L +PY + D+L KLIP   
Sbjct: 416  IDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGEADKLAKLIPVVR 475

Query: 484  AHPVSLQAIAD----DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
              P  L  + D       FR+  + D  V + ++++ ++EG  +    HAAG+VI   PL
Sbjct: 476  GKPYKLNEMIDKNSPSQEFRDKYINDNRVKKWVDLALRIEGTNKTYGVHAAGVVIASDPL 535

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
             +LVP+ R+      +TQ++M  IE  GL+K DFLGLK LT++ K++  + Q  G  +++
Sbjct: 536  DELVPLQRN-NEGQIITQYSMDDIESLGLLKMDFLGLKNLTMIDKTVSLINQSTGKIINV 594

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN- 657
              +P +D +T+ L+      GIFQLESSGM+Q ++  +P+ +EDI ++++LYRPGP+D  
Sbjct: 595  DDLPQNDSKTFELIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILALYRPGPLDAG 654

Query: 658  -IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             I  + NRKNG EK+   HP I  +L ET G+++YQEQ+M+IAQ L+GYSL +AD+LRRA
Sbjct: 655  LIPKFINRKNGNEKVDFPHPFIKSILTETYGIMVYQEQIMKIAQDLAGYSLGDADLLRRA 714

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK   EM K +  F+ G+ K G+++ +A ++F+ +  FA+Y FNKSH+ AY  ++YQT
Sbjct: 715  MGKKKVSEMVKHRNIFVKGSMKKGVNEKLANDLFDQMVLFAEYCFNKSHSTAYGAVTYQT 774

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K H+PV ++AA +++   + +K++++  +    NI+++ PS+N   VDF + +N+I 
Sbjct: 775  AFLKAHFPVAYMAALLSVNSGSSDKMQRYISNCYSMNIEVISPSINFSGVDFTIKNNQIL 834

Query: 837  YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF- 894
            + L+AIK +G +  R+I+E       F+SL D C R+ S  LN+R LESL+  GALD F 
Sbjct: 835  FGLSAIKNLGESAIRNIIENRNSFGIFESLSDLCDRLPSNVLNKRSLESLIHCGALDEFS 894

Query: 895  -GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI---TLEKFSVENSSV 950
               +R QLL  L+++  +A    ++R +   N+F  ++   +       L+K    +   
Sbjct: 895  NDNNRAQLLSDLEHVIDWASSRNRDRLSGQGNLFDSKEEFSNVAFLDTQLKKVDDYSLIE 954

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            + + E+++LGFY S HPL       + +      +   T     + L  M+   +Q  TR
Sbjct: 955  KLKLEKQLLGFYLSDHPLKHLAKPAKLISPINISQLEETKDRTKVSLVVMIPDLKQITTR 1014

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
            KG R+  V   + +   EA  FP
Sbjct: 1015 KGDRMAIVQLEDLSGSCEAIVFP 1037


>gi|282856832|ref|ZP_06266091.1| DNA polymerase III, alpha subunit [Pyramidobacter piscolens W5455]
 gi|282585342|gb|EFB90651.1| DNA polymerase III, alpha subunit [Pyramidobacter piscolens W5455]
          Length = 1155

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1036 (34%), Positives = 570/1036 (55%), Gaps = 28/1036 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    +FVHL VH+ YSLL+GA+   ++  + A    PA+A+TD   ++ A+EF Q+  +
Sbjct: 1    MSAEKNFVHLHVHTEYSLLDGAIRCADLAKRCAEWGMPAVAMTDHGVMYGAVEFYQQCKS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIGC++ +                     ++LL    EGY  LI+LVS       
Sbjct: 61   AGVKPIIGCEMYVSPDG-------IDNKEKKYNHLLLLAENDEGYHNLIKLVSIANTR-G 112

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 R+    L +  ++GLI  +   +G I R       + A +R   ++ +FG +  +
Sbjct: 113  FYYKPRVDHQLLAQY-SKGLICSSACLAGEIPRFLLEGDEKGALERAQMYRDIFGAESFF 171

Query: 184  VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +  ++  ++      ++++A  +  PL+ATN++ +L+  DY+ H++L+ V    V++ 
Sbjct: 172  LEIMPNQLPEQVAVNKMIIEMARKNNFPLLATNDAHYLNSSDYDWHELLLCVGTKKVITD 231

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
              R     + +    ++ +  +            +                  + K    
Sbjct: 232  PGRMSFRVNDFYFRSAQEMWGYFGSEAPDSLENTLRIAERCHFDFALNTGDYLLPKFEIP 291

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                 +  L   A +GL+ R     +       +Y  RL +EL +I +MKF GYFLI+AD
Sbjct: 292  EGMTLDTYLEKMARSGLKER-----LGVEVIPDEYENRLSYELGIIKQMKFPGYFLIIAD 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             I   K + IP+GPGRGS AGS+ AY++ IT++DP+RF L+FERFLNP+R+SMPD D D 
Sbjct: 347  VIGACKSHGIPIGPGRGSAAGSLVAYSMKITELDPIRFGLIFERFLNPERVSMPDIDTDV 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
                RD +I+YV +KYG E V+QIITFG +++K A++DVGRA+ MPY+ V+++  L+P  
Sbjct: 407  SDKGRDRLIKYVVDKYGVENVSQIITFGRMKSKQAIKDVGRAMGMPYADVNKVANLVP-- 464

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                   +A+      ++   +D  + +LL  +  +EGL RH S HAAG+VI  +PL+ L
Sbjct: 465  DGAKSIKEAVEQTPDLQDLEKSDSQISKLLTSASSMEGLARHCSQHAAGVVITPKPLTDL 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLI 601
            VP+ +        TQF+M  +   GL+K DFLGL+TL++L++++  + + G    DL+ +
Sbjct: 525  VPVRQIE-EGQVATQFSMDPVASLGLVKMDFLGLQTLSILEEAVANVKRNGTTLGDLNRL 583

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD E Y LL    TLGIFQLESSGMR+ ++ MQPD   D++A+++LYRPGP+++ +V 
Sbjct: 584  PLDDPEVYRLLQNADTLGIFQLESSGMRRLIKKMQPDRFADLVAILALYRPGPLESGMVD 643

Query: 662  NNRKNGK-EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
                    E++  +HPL++P+L ET GV++YQEQVM+ A  L+GY+L  AD+LRRAMGKK
Sbjct: 644  QYVNCKHGEEVHYLHPLLEPVLNETYGVVLYQEQVMKCASTLAGYTLGGADLLRRAMGKK 703

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             K  MD+ +  FI+GA+KNGI       IF+++ KFA YGFNKSH+AAYA+++YQTAW+K
Sbjct: 704  KKSVMDEHRSIFINGAAKNGIDAEKGAEIFDIIEKFAGYGFNKSHSAAYALVTYQTAWLK 763

Query: 781  THYPVEFLAASMTLEMDNVEKIK-KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
             HYP EF+AA ++ ++   +++  ++ ++ R   I ++ P +N    DF    N I + L
Sbjct: 764  VHYPKEFMAAYLSSKIGAKKEVMAEYVREVRASGIDVLAPDINQSYADFTATKNEIRFGL 823

Query: 840  AAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
              +  VG      I +A  +  PF    DF  RVD   + + V+ESL+ AGA D    +R
Sbjct: 824  GGVTKVGEAALNSIFKAREEGGPFKGFWDFIVRVDKHSVGKAVIESLIKAGAFDSLNSNR 883

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             QLL SLDN+ + A    ++      ++F     T  D+  L +    N + + E E+  
Sbjct: 884  KQLLTSLDNLFEVAS--RRDSQGDQGSLFGDM--TSEDQPELAEVDDLNITEKLEMEKEA 939

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGW 1017
            LG Y SGHP D ++ +  +       +             A ++   Q+K T++G  +G 
Sbjct: 940  LGMYISGHPFDGFRRLAAQKANARIADLPYWKSDTTTPTFAGLLSGWQEKMTKRGDAMGI 999

Query: 1018 VTFSEPAKEYEANFFP 1033
             +  +   E +   FP
Sbjct: 1000 FSIDDGEDEIKVICFP 1015


>gi|160872170|ref|ZP_02062302.1| DNA polymerase III subunit alpha [Rickettsiella grylli]
 gi|159120969|gb|EDP46307.1| DNA polymerase III subunit alpha [Rickettsiella grylli]
          Length = 1166

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1051 (38%), Positives = 607/1051 (57%), Gaps = 43/1051 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
             SF+HL +HS YSL++G + +  ++DK      PA+A+TD +NLF+ ++F Q A   GI+
Sbjct: 2    SSFIHLHLHSEYSLVDGLIRIEKLVDKACELSMPALAVTDLSNLFATIKFYQAAIKKGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG +  +                     ++LL     GY+ LI+L+S+ YL +  +  
Sbjct: 62   PIIGAECRVKDD-----------QEGQEYQLILLCQNLRGYRNLIQLISKSYLENAKEGQ 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +   W     +EGLI L+G   G I       +  +A   L  + +LF +R Y+ +QR
Sbjct: 111  PLLQKDWFSIY-SEGLIALSGAREGDIVSCLMKKNKSLAVDYLQFWLRLFPNRFYLQVQR 169

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                 +       V LA +  +P+VATN   FL  ED+EAH+  + + +  +++   R +
Sbjct: 170  LGRPLEEEYIELSVGLAASFNVPVVATNEVCFLVPEDFEAHEAKVCINNGYLLNDPKRLK 229

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK- 305
              T   YL++  EMV +F+D+P AL N+VEIA+RC+  +++ A  LP F   E    +K 
Sbjct: 230  FYTNQQYLRSMEEMVVLFADIPSALSNSVEIAKRCNLEIELGASFLPNFPIPEGMSAEKL 289

Query: 306  -------------EEENELR---NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                           ++ LR    K      +             + Y  RL  EL VI 
Sbjct: 290  LTQEAQSGLTRYLGSQSFLRVSQTKNKEFQPIEKLTSPQTFKAFEKIYFDRLHSELQVIN 349

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
             M F+ YFLIVADFI+WAKKN IPVGPGRGSGAGS+ AY L IT +DPLR+ LLFERFLN
Sbjct: 350  SMGFASYFLIVADFIRWAKKNKIPVGPGRGSGAGSLVAYVLQITGLDPLRYDLLFERFLN 409

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC + RD VI YV  +YG   V+QIIT+GS+ A+A +RDVGR L  PY
Sbjct: 410  PERISMPDFDIDFCMEGRDRVIDYVTTRYGRNAVSQIITYGSMAARAVVRDVGRVLGYPY 469

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
              VD++ KLIP +    +  +A+  +   +     +  +  L+++++KLEGL R+   HA
Sbjct: 470  GMVDKIAKLIPFELGITLE-KALTQEDELKTRYENEDEIKILIDLAKKLEGLVRNVGKHA 528

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
             G+VI    L    P+Y +      +TQF+   IEK GL+KFDFLGL+TLT++   +  +
Sbjct: 529  GGVVIAPSQLVDFTPLYCERGGTHCITQFDKDDIEKVGLVKFDFLGLRTLTIIDWVVQAI 588

Query: 590  AQRGVKV----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             ++        D+  IP DD +T+ LL    T  IFQLES GMR  ++ + PD  ++I+A
Sbjct: 589  NKKKKPEEELLDIGTIPLDDVKTFDLLKACKTTAIFQLESRGMRDLIKRLCPDSFDEIVA 648

Query: 646  LVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            LV+L+RPGP+ + +   + NRK+G+  +   HPL++P+L  T G+I+YQEQVMQIAQ+L+
Sbjct: 649  LVALFRPGPLQSGMVDDFINRKHGRAHVQYAHPLLEPILSSTYGIILYQEQVMQIAQVLA 708

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            GY+L  AD+LRRAMGKK  EEM +Q+  F+ GA + GI +++A  IF+L+ KFADYGFNK
Sbjct: 709  GYTLGAADLLRRAMGKKKSEEMAQQRTIFMKGAEQEGIERSLANQIFDLMEKFADYGFNK 768

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+ AYA++SYQTAW+KTHY  EF+AA ++ +MD+ +K+  F  + R  N+ I+PP +N 
Sbjct: 769  SHSVAYALVSYQTAWLKTHYAAEFMAAVLSSDMDHTDKVVIFLDECRAMNLPILPPDINC 828

Query: 824  PCVDFKVGD--NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                F V D    I Y L AIKG+G      ++E      F  L D C RVD +KLNRR 
Sbjct: 829  SEYKFTVDDDTGAIRYGLGAIKGLGLGAIEMLIEQRQQDAFRDLFDLCQRVDFQKLNRRG 888

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            +++L+ +G+LD FG +R  LL++++   + A      +++  ++ F  E  + S+++T +
Sbjct: 889  IDALICSGSLDSFGLNRATLLENVEAALQAAIQKSLTKSSGQKDFFGLEMVSHSNQMTHQ 948

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            K        R + E+  LGFY SGHP++ Y   L         ES+    G+ I +A  V
Sbjct: 949  K--DWPKLERLQAEKDALGFYLSGHPIENYSNELPHFITSSLRESM-IKSGHTITIAGWV 1005

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++ +   T++G R+  +T  +     E   F
Sbjct: 1006 LNIRSLWTKRGDRMAILTLEDTNGRLEVTLF 1036


>gi|87302218|ref|ZP_01085043.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 5701]
 gi|87283143|gb|EAQ75099.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 5701]
          Length = 1179

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1056 (36%), Positives = 583/1056 (55%), Gaps = 40/1056 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++  A   PA+A+TD   ++ A+E  +   AAGI+P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPQMVERAVALGMPALALTDHGVMYGAIELLKLCQAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          +G+        +V+L     GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPWVKGERR----YHLVVLAKNDTGYRNLVKLTSLSHLRGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L++   EGLI+ T    G I +A       VA      + + FG   Y+ 
Sbjct: 118  FSRACIDKQLLEQ-HREGLILATACLGGEIPQAILKGRQDVARDVARWYHQRFGADFYLE 176

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V++A    + L+ATN++ +LS  D EAHD L+ V    +V+ + 
Sbjct: 177  IQDHGSPEDRIVNVELVRIARELGIELIATNDAHYLSSADVEAHDALLCVLTGKLVTDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R R T   Y+K+ +EM  +F+D   PE +   +      +  ++ +  +  + + +    
Sbjct: 237  RLRYTGTEYIKSEAEMGRLFADHLEPEVVAEAIANTAAVAEKVEAYDILGRQQMPRFPIP 296

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                  + L   + AGL  RL  G+         Y +RL FEL V+ +M F  YFL+V D
Sbjct: 297  DGHTAVSYLAEVSEAGLRQRLHLGSSDP--IDPLYGERLAFELQVMEQMGFPTYFLVVWD 354

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I++A++  IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 355  YIRFAREQGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDIDTDF 414

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KLIP  
Sbjct: 415  CIERRGEVIEYVTQRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 474

Query: 483  PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
               P  L+ +    +    FRE    D  V R +++++++EG  +    HAAG+VI   P
Sbjct: 475  RGKPAKLKEMIGPESPAPEFREKYENDAQVRRWVDMARRIEGTNKTFGVHAAGVVIAAEP 534

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            L  LVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K+LD + Q  G ++D
Sbjct: 535  LDSLVPLQRN-NDGQVITQYFMEDVEAMGLLKMDFLGLKNLTMIDKTLDLVEQCSGERID 593

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               +P  D +T+ LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYRPGP+D 
Sbjct: 594  PDDLPPCDDDTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPGPLDA 653

Query: 658  --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  + NRK+G+E I    P ++P+LKET G+++YQEQ+M+IAQ L+GYSL EAD+LRR
Sbjct: 654  GLIPKFINRKHGREAIDFACPALEPILKETYGIMVYQEQIMRIAQDLAGYSLGEADLLRR 713

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK   EM K + +F+ GA+  G+S  +A  +FE +  FA+Y FNKSH+ AY  ++YQ
Sbjct: 714  AMGKKKVSEMQKHRSQFVEGATARGVSAAVAEALFEQMVLFAEYCFNKSHSTAYGAVTYQ 773

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYPV ++AA +T+   + +K++++  + +   I++MPP +N   +DF     +I
Sbjct: 774  TAYLKAHYPVAYMAALLTVNASSTDKVQRYIANCQAMGIEVMPPDLNASGIDFTPKGEKI 833

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L+A++ +G    R ++EA   D PF SL D C R+ +  +NRR LESL+  GALD  
Sbjct: 834  LFGLSAVRNLGDGAIRQLLEARVQDGPFASLADLCDRIPTTLMNRRALESLIHCGALDGL 893

Query: 895  GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---------------HEKGTFSDK 937
                +R QL+  LD +  +A    ++R +   N+F                      S  
Sbjct: 894  EPSANRAQLMADLDLVLDWASSRARDRASGQGNLFDLFATPGEAAGSAAAEPGPANQSTA 953

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
                  +      +   E+ ++GFY S HPL      +R +                + +
Sbjct: 954  PKAAPVADYPPKEKLRLEKELVGFYLSDHPLRQLARPIRMLSPISLGRLEEQADKARVSV 1013

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             AM+   +Q  TRKG R+  +   + +   E   FP
Sbjct: 1014 VAMLPEVRQVTTRKGDRMAVLQLEDLSGSAECVVFP 1049


>gi|145634848|ref|ZP_01790556.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittAA]
 gi|229844610|ref|ZP_04464749.1| DNA polymerase III subunit alpha [Haemophilus influenzae 6P18H1]
 gi|145268014|gb|EDK08010.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittAA]
 gi|229812324|gb|EEP48014.1| DNA polymerase III subunit alpha [Haemophilus influenzae 6P18H1]
          Length = 1159

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1048 (37%), Positives = 595/1048 (56%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +          +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGADVKV----------KSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQR-G 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 110  YNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVDFYQEFFADHFYL 168

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     +       ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +   
Sbjct: 169  ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++       +   +   
Sbjct: 229  KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA     +         Y +RL  EL+VI +M F GYFLI
Sbjct: 284  GDLSTEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLQTAYDSDEEVRALIDMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD +++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPKSFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT E+DN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEIDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     T  D +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHEDVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A ++V+ 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1003 RIAITKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|313500226|gb|ADR61592.1| DnaE [Pseudomonas putida BIRD-1]
          Length = 1174

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1060 (38%), Positives = 588/1060 (55%), Gaps = 56/1060 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS +SL++G + +  +   +     PA+AITD +N+ S ++F + A  AGI+PI
Sbjct: 5    FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L +           G  P   +  I  L    +GY+ L EL+SR +   Q    V 
Sbjct: 65   CGADLWLA----------GADPDAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNGLVI 114

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
            +   W+    +EGLI L+ G  G I  A        AE  L  +  +F +R YV +QR +
Sbjct: 115  LQREWIA-PASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTN 173

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
            R  D       V LA     PLVATN+  F+ + D++AH+  + +     +    RPR  
Sbjct: 174  RARDEEYVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCY 233

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   YLK+  EM  +FSDLP+A+ NTVEIA+RC+  +Q+    LP F       I    +
Sbjct: 234  SDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI----D 289

Query: 309  NELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            + LR+ A  GLE         +         Q Y  RL FEL++I +M F GYFLIV DF
Sbjct: 290  DYLRHVAHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDF 349

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 350  IKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFC 409

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D RD VI YV   YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP + 
Sbjct: 410  MDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 469

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +   R+    D     + +++ KLEG+ R    HA G+VI    L+   
Sbjct: 470  GMTLE-KAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFS 528

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598
            P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ +      +    +++
Sbjct: 529  PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNI 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD +TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + 
Sbjct: 589  DFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 648

Query: 659  VVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V +                   +  + P+L  T G+I+YQEQVMQIAQ+++GY+L  AD
Sbjct: 649  MVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGAD 708

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY +
Sbjct: 709  MLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 768

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VN     F V 
Sbjct: 769  VSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVN 828

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D RI Y L AIKGVG      I+EA A   PF  L DFC R+D K++N+R L++LV +G
Sbjct: 829  NDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSG 888

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKG 932
            ALD  G                +R  LL +L    K A+       + H ++F    +  
Sbjct: 889  ALDRLGPHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAA 948

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                     K        R + E+  LG Y +GHP+D Y+  +R+   +   +   +   
Sbjct: 949  DIDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSRET 1008

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A M+++ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1009 Q--TIAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046


>gi|320155607|ref|YP_004187986.1| DNA polymerase III subunit alpha [Vibrio vulnificus MO6-24/O]
 gi|319930919|gb|ADV85783.1| DNA polymerase III alpha subunit [Vibrio vulnificus MO6-24/O]
          Length = 1143

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1031 (39%), Positives = 603/1031 (58%), Gaps = 37/1031 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G   +  ++ ++AA   PA+A+TD  NL   ++F   A   GI+PIIG    +    
Sbjct: 1    MVDGINKVPALVKQVAALGMPAMALTDFTNLCGLVKFYGAAHGNGIKPIIGADFKM---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L +   GY+ L  L+S+ YL    +    I   WL E+ +
Sbjct: 57   ------QSPEFGDELTQLTVLAADNTGYKNLTLLISKAYLRGHVQHQPVIDKEWLIEL-S 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+G  +G I +A    + ++ E  +  +++ F DR Y+ L R    D        
Sbjct: 110  EGLIILSGARNGEIGKALLKGNQKLVESCVAFYQQHFADRFYLELIRTGRSDEETYLHFA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            ++LA  ++LP+VATN  +F+ +E ++AH++ +A+     +    RP+  +P  YL+   E
Sbjct: 170  IELAEQYDLPVVATNEVVFIGQELFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEALEN+VEIA+RC+  +++                   E   L  K+  GL
Sbjct: 230  MCELFADIPEALENSVEIAKRCNVTVRLWEYF-----LPAFPTEGMAETEFLVMKSKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGP
Sbjct: 285  EERLEFLFPDPEIRAQRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V  
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLE-KAFKAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
               E   AD  V  L+++ + LEG  R+A  HA G+VI    ++   P+Y D   + PVT
Sbjct: 464  ALPELYEADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGNFPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V +  IP DD  ++ +
Sbjct: 524  QFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKAPVRIESIPLDDPASFRI 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584  LQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             I        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  AISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTHYP
Sbjct: 704  MAKQRATFEEGAVKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  + ++PP +N+    F V  +  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFNVDENGAIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L DFC+R+D KK+N+RV+E L++AGALD  G  R  L+
Sbjct: 824  GVGEGPIDAILEARTKGGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGF 961
             SLD+  K A    +       ++F        + +    +       V  E E+  LG 
Sbjct: 884  ASLDDAVKAASQHHQAEAFGQADMFGVLTDAPEEVEHKYIQVEPWPEKVWLEGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y +GHP++ Y   L K      +++  T R  ++ LA +V++ +   T++G+RIG +T  
Sbjct: 944  YLTGHPVNAYLTELNKYTSCRLKDATPTRRDQSLTLAGLVIAARVMTTKRGTRIGIMTLD 1003

Query: 1022 EPAKEYEANFF 1032
            + +   E   F
Sbjct: 1004 DRSGRMEVMLF 1014


>gi|254251803|ref|ZP_04945121.1| DNA polymerase III [Burkholderia dolosa AUO158]
 gi|124894412|gb|EAY68292.1| DNA polymerase III [Burkholderia dolosa AUO158]
          Length = 1177

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1044 (39%), Positives = 607/1044 (58%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F Q+A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   KGIKPIAGCDVWIANPDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL+   ++GL+ L+G   G I  A    + + A +    + K+F    Y+
Sbjct: 110  YRGRAELDASWLEGELSQGLLALSGAQQGDIGLALAAGNEEAARRHAERWAKVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q   LA +  LP+VAT+ + F++ +D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAASLAASLRLPVVATHPTQFMTADDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T + Y + + EMV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   
Sbjct: 230  RRQKRFTTEQYFRTQDEMVALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GLE RLAQ    +         Y +RL+FE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSREGLEKRLAQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKAD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              LS +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLSQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+S+  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAKHREIFAEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCIANNLVVLPPDINLSHYRFEPVAEAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ A
Sbjct: 826  GKRSRTIRYGLGAVKGSGQNAIEEILRARDEKPFTDLFDFCERIDRRIVNRRTIEALIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R QLL S+    + A   +         +F     +      L      + 
Sbjct: 886  GAFDSLNANRAQLLASVPLAMEAAD--QAEANALQAGLFDMGAES-PHAHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   +           +A ++ S + + 
Sbjct: 943  KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKIGDLKEGRDK---LVAGIIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MLIALLDDGTGQCEITIF 1022


>gi|52841197|ref|YP_094996.1| DNA polymerase III, alpha subunit [Legionella pneumophila subsp.
            pneumophila str. Philadelphia 1]
 gi|52628308|gb|AAU27049.1| DNA polymerase III, alpha subunit [Legionella pneumophila subsp.
            pneumophila str. Philadelphia 1]
          Length = 1148

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/1039 (41%), Positives = 626/1039 (60%), Gaps = 35/1039 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VH+ +SL++G + +  ++  + A    A+A+TD  NLF+A++  + A  AGI+P
Sbjct: 4    RFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSAVAVTDFCNLFAAVKVFKSATEAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  L                    + S+VLL     GY+ L  LVS+ Y   Q     
Sbjct: 64   IIGSDL----------PCHDLETPDNIFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHGQP 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+ L W+QE  ++GLI L+GG  G I +A   N   +A KR L +  LF +R Y+ +QR 
Sbjct: 114  RVQLQWIQEF-SQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQRT 172

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
               D  +   +++ LA   +LPLVATN+  F+ E+D++AH+  + +     ++   R  +
Sbjct: 173  GRADELHYNEKLIALADELQLPLVATNDVRFIDEDDFDAHEARVCIHEGYTLADPRRVQQ 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YL++  EM  +FSDLP AL+NTVEI++RC+  L++    LP F   +        
Sbjct: 233  YSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDG----TTV 288

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYH-----AQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            E  L + +  GLE RL Q    K          +Y +RL  EL+VI  M F+GYFLIVAD
Sbjct: 289  EAYLSHLSEIGLEERLKQLFRDKSEGELLAARGEYDKRLKIELDVINNMGFAGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD VI YV  KYG + V+QIITFG++ AKA +RDVGR L  PY  VD+L KLIP +
Sbjct: 409  CMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +S +A+  +   R     +  V  L +++ KLEG+ R+A  HA G+VI    L+  
Sbjct: 469  LGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAPSQLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
              +Y +  S   V+QF+   +E  GL+KFDFLGL+TLT++  +L  + ++        +D
Sbjct: 528  TAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENAGLSPID 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +S IP  D  T+ LL    T  +FQLES GM++ +  +QPDC EDIIALV+L+RPGP+ +
Sbjct: 588  ISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFRPGPLQS 647

Query: 658  IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +   + +RK+G+ ++   HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L  AD+LRR
Sbjct: 648  GMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRR 707

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM KQ+E F  GA   G+ + +A +IF+L+ KFA YGFNKSH+AAYA+++YQ
Sbjct: 708  AMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAYALVAYQ 767

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K HYP  F+AA M+ +MDN +K+  F  +     +Q++PPS+N     F V D + 
Sbjct: 768  TAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFTVSDEKT 827

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y L AIKGVG +    I++    + PF  L  FC R+D +K+NRRV+E+L+ +GA D 
Sbjct: 828  IIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIKSGAFDI 887

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            +   R  L  SL+   K A+   +N+++   ++F+  +   +D+    +    + + R E
Sbjct: 888  WKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLED-KADEQNYVESKSWSEAQRLE 946

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ VLGFY +GHP D Y+  L    I    +   ++    I + A VV+ ++  T++G 
Sbjct: 947  GEREVLGFYLTGHPADQYRRELGDF-IVPVSQLNPSLHKKAI-ICAQVVAIRKIITKRGK 1004

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            ++  +   +     +A  F
Sbjct: 1005 KLVIIGMDDATARIDAVVF 1023


>gi|87306887|ref|ZP_01089033.1| DNA polymerase III alpha subunit [Blastopirellula marina DSM 3645]
 gi|87290260|gb|EAQ82148.1| DNA polymerase III alpha subunit [Blastopirellula marina DSM 3645]
          Length = 1181

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/1057 (33%), Positives = 566/1057 (53%), Gaps = 41/1057 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL  H+ YSLL+GA S+  ++ +       A+AITD  NL  AL+F +   A
Sbjct: 1    MSDR-RFVHLHCHTHYSLLDGAGSIPRLVGRAKDHGMNALAITDHGNLHGALQFYRACKA 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            A I P+IG +  I      + +   +    +   + LL     G++ L++L S  YL + 
Sbjct: 60   AEINPVIGYEAYIAPGSRFEKSGSQR---DSNYHLTLLAQNKIGFRNLVKLSSAAYL-EG 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEK----RLLTFKKLFG 179
                 RI    L++  +EG+I L+G  S    +      S++  EK        F+++F 
Sbjct: 116  FYFKPRIDKELLEKY-SEGIICLSGCVSSEFSKTILRGTSTEELEKEGANVASWFQRVFK 174

Query: 180  DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            DR ++ +  +     R +    V +A    +PLVAT+++ ++ ++D EA DV++ +    
Sbjct: 175  DRYFIEIMNNGLDIQRMQLEGAVDIANKIGVPLVATSDTHYVDQDDAEAQDVMLCINTGK 234

Query: 239  VVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
              +  +R R+     +L+++ +M + F  L +A+  + EIA      L++     P +  
Sbjct: 235  FRTDTNRMRMENDQFFLRSQEQMYADFPRLEDAVARSQEIADTVDLDLELGKRHFPTYTL 294

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                  +K  +  LR   + GL+ R    +  +  G  ++    RLD EL VI+R+ F  
Sbjct: 295  P----PEKTADGYLRELCIQGLKERYEGNEEMLPGGELSEVVMARLDRELGVISRLGFPN 350

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV DF+  A+K NIP    RGSG G++  YAL ++ + P+++ LLFERFL+ +R+  
Sbjct: 351  YFLIVWDFVVEARKQNIP-ATARGSGVGAIVCYALYMSHVCPIKYDLLFERFLDENRLEA 409

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD DIDF ++RR  VIRYV++KYG + VAQI TFG+L A+AA++DVGRAL +P  +V+ +
Sbjct: 410  PDIDIDFDKERRGLVIRYVKDKYGEDNVAQIGTFGTLAARAAIKDVGRALGLPLDRVNAI 469

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
              ++P      +   AI      ++A   D     +L ++ K+EGL R+  THAA +VI 
Sbjct: 470  TGMVPETLGIKLK-TAIETSEELKQAYENDGEAREVLSLAMKIEGLARNVGTHAAAVVIA 528

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594
            DRPL++ VP+ R    +  +TQ++M  +E AGL+K DFLGL+ LT+L+ ++D +  R   
Sbjct: 529  DRPLTEYVPLCRVTGKEDLITQWSMNDVEDAGLLKMDFLGLRNLTILRNAIDLIETREGK 588

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D+  +P DD ET+ LL    T G+FQLES G+R  L  M+PD   DIIA  +LYRPGP
Sbjct: 589  PFDIHKMPLDDEETFALLRRGETKGVFQLESGGIRDLLRRMKPDSFLDIIATNALYRPGP 648

Query: 655  IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            ++  +V  Y   KNG++     HP+++ +L+ET GV++YQEQVM+I   L    L++A  
Sbjct: 649  LEGGMVDEYIEVKNGRKAAEYKHPVLEKILEETNGVMVYQEQVMRILNQLGDIPLAKAYT 708

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
              +A+ KK +  + + +E+F+ GA + G++K  A   +E++ KFA YGFNKSH+ AYA++
Sbjct: 709  CIKAISKKKESLIQQNREQFMIGAVEKGLTKKEAEEFWEMIVKFAGYGFNKSHSTAYALV 768

Query: 773  SYQTAWMKTHYPVEFLAASMTLE-----MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            +YQTA++KTHYP EF+AA ++ +         + + +  +D+ +  I ++ P VNT  V 
Sbjct: 769  AYQTAYLKTHYPKEFMAALLSGDISGRNFKTKDALVEHMEDSERMEIDVVAPDVNTSDVQ 828

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F V D +I ++L+AIKG G   A  I+ A   D PF  + DFC RVD+ + NR  +E+L+
Sbjct: 829  FAVVDGKIPFALSAIKGCGGGAAEAIVAARRKDGPFTDIFDFCERVDASQCNRAAIETLI 888

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKF 943
             AGA D    +R QL   LD   +       +R    +N+FA      G  S  + L   
Sbjct: 889  KAGAFDSMSTNRAQLSSVLDKAIQSGAAALADRKAGQKNLFAAMEEASGAASKAVKLPDV 948

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
               N   +   E+ VLGF+ + HPL  Y             +        ++ +  M+ S
Sbjct: 949  EEWNEREKLLYEKEVLGFFLTSHPLAEYGQSFAIYCTHTTTDIPQMKDKQDVVMGGMITS 1008

Query: 1004 KQ-------QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +       +  +   ++       +         +P
Sbjct: 1009 IKLAHTKRARPGS-NNTKYANFDLEDVNGAIRCIMWP 1044


>gi|26988338|ref|NP_743763.1| DNA polymerase III subunit alpha [Pseudomonas putida KT2440]
 gi|24983087|gb|AAN67227.1|AE016349_8 DNA polymerase III, alpha subunit [Pseudomonas putida KT2440]
          Length = 1174

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1060 (38%), Positives = 588/1060 (55%), Gaps = 56/1060 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS +SL++G + +  +   +     PA+AITD +N+ S ++F + A  AGI+PI
Sbjct: 5    FVHLRVHSEFSLVDGLVRIKPLAKALTGMNMPAVAITDQSNMCSLVKFYKTAMGAGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L +           G  P   +  I  L    +GY+ L EL+SR +   Q    V 
Sbjct: 65   CGADLWLA----------GADPEAPLSRICFLAMDPKGYRNLTELISRGWTDGQRNGLVI 114

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
            +   W+    +EGLI L+ G  G I  A        AE  L  +  +F +R YV +QR +
Sbjct: 115  LQREWIA-PASEGLIALSAGKEGDIGMALLAGRQDEAEALLQDWMGMFPERFYVEVQRTN 173

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
            R  D       V LA     PLVATN+  F+ + D++AH+  + +     +    RPR  
Sbjct: 174  RARDEEYVHAAVALADKLGAPLVATNDVRFIKQADFDAHETRVCIGEGWTLDDPRRPRCY 233

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   YLK+  EM  +FSDLP+A+ NTVEIA+RC+  +Q+    LP F       I    +
Sbjct: 234  SDQQYLKSAEEMAELFSDLPDAIANTVEIAKRCNIQVQLGKYFLPDFPTPNGMGI----D 289

Query: 309  NELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            + LR+ A  GLE         +         Q Y  RL FEL++I +M F GYFLIV DF
Sbjct: 290  DYLRHVAHEGLEERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDF 349

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N++PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD+DFC
Sbjct: 350  IKWAKNNDVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFC 409

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D RD VI YV   YG   V+QIITFG++ AKA +RDV R     Y   DRL K+IP + 
Sbjct: 410  MDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEV 469

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A   +   R+    D     + +++ KLEG+ R    HA G+VI    L+   
Sbjct: 470  GMTLE-KAYEQEEILRDFLKGDEDAREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFS 528

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDL 598
            P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ +      +    +++
Sbjct: 529  PIACDEEGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKNLPDLNI 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD +TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RPGP+ + 
Sbjct: 589  DFIPLDDRKTYELLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSG 648

Query: 659  VVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V +                   +  + P+L  T G+I+YQEQVMQIAQ+++GY+L  AD
Sbjct: 649  MVDDFINRKHGRAELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGAD 708

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY +
Sbjct: 709  MLRRAMGKKKPEEMAKQRGGFIEGCVANNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGL 768

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            +SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VN     F V 
Sbjct: 769  VSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFTVN 828

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D RI Y L AIKGVG      I+EA A   PF  L DFC R+D K++N+R L++LV +G
Sbjct: 829  NDGRIVYGLGAIKGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALVRSG 888

Query: 890  ALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKG 932
            ALD  G                +R  LL +L    K A+       + H ++F    +  
Sbjct: 889  ALDRLGPHFHDEIKAYHANIDINRATLLSALGEAIKAAEQAAHTADSGHVDLFGSMFDAA 948

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                     K        R + E+  LG Y +GHP+D Y+  +R+   +   +   +   
Sbjct: 949  DVDVYANHRKVRELTLKERLKGEKDTLGLYLTGHPIDEYETEIRRFARQRIVDLKPSRET 1008

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +A M+++ +  K +KG ++G+VT  + +   EA+ F
Sbjct: 1009 Q--TIAGMIIALRVMKNKKGDKMGFVTLDDRSGRIEASLF 1046


>gi|33861502|ref|NP_893063.1| DNA polymerase III subunit alpha [Prochlorococcus marinus subsp.
            pastoris str. CCMP1986]
 gi|33634079|emb|CAE19404.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus subsp.
            pastoris str. CCMP1986]
          Length = 1165

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1043 (35%), Positives = 593/1043 (56%), Gaps = 28/1043 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L  HS YSLL+GA  ++ I+D+       +IA+TD   ++  L+  +K  + GI+PI
Sbjct: 3    FVPLHNHSDYSLLDGASQVSKIVDRACELGMDSIALTDHGVMYGVLDLVKKCKSKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ--- 127
            IG ++ I          +          +V+L     GY+ L++L +  +L     +   
Sbjct: 63   IGNEMYIINGSIDDPQPK----KEKRYHLVVLAKNHTGYKNLVKLTTISHLNGMRGRGIF 118

Query: 128  -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  S L++   +GLI+ T    G I +A       VAE   + +K++FGD  Y+ +
Sbjct: 119  SRPCIDKSLLEKY-NDGLIISTACLGGEIPQAILKGRIDVAENTAVWYKRIFGDDFYLEI 177

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    DR    +++++   H++ ++ATN++ ++S  D EAHD L+ V    ++S + R
Sbjct: 178  QDHGSIEDRIVNVELIRIGKEHQIKVIATNDAHYISNMDVEAHDALLCVLTGKLISDEKR 237

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R T   Y+K+  EM+ +F+D  +  +++  +      S  ++         + K     
Sbjct: 238  LRYTGTEYIKSEDEMLRLFNDHIDKESIKEAINNTVEVSQKIEEFELFGTYRMPKFPLKE 297

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            + +  + L      GL  RL +  +      + Y++RL  EL +I  M F  YFL+V D+
Sbjct: 298  ETDSLSFLTKITKQGLLSRLNKNNLD--EIDEIYKKRLTSELKIIDDMGFPDYFLVVWDY 355

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++A+ ++IPVGPGRGS AGS+ AYAL IT+IDP++  LLFERFLNP R SMPD D DFC
Sbjct: 356  IKFARDSSIPVGPGRGSAAGSLVAYALQITNIDPVKHGLLFERFLNPARKSMPDIDTDFC 415

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRR+EVI YV N+YG ++VAQIITF  + +KA L+DV R L +PY + D+L KLIP   
Sbjct: 416  IDRRNEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGESDKLAKLIPVVR 475

Query: 484  AHPVSLQAIAD----DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
              P  L  + D       FR+  L D  V + ++++ ++EG  +    HAAG+VI   PL
Sbjct: 476  GKPYKLNEMIDKKSPSPEFRDKYLKDIKVKKWIDLALRIEGTNKTYGVHAAGVVIASDPL 535

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDL 598
              LVP+ R+      +TQ++M  IE  GL+K DFLGLK LT++ K++  +    G K+++
Sbjct: 536  DMLVPLQRN-NEGQIITQYSMDDIESLGLLKMDFLGLKNLTMIDKTISLIESSTGQKINI 594

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN- 657
              +P  D++T+ L+      G+FQLESSGM+Q ++  +P+ +EDI ++++LYRPGP+D  
Sbjct: 595  DKLPPKDNKTFDLIGRGDLEGVFQLESSGMKQVVKDFKPNSLEDISSILALYRPGPLDAG 654

Query: 658  -IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             I  + NRKNG EKI   HP I+ +L ET G+++YQEQ+M+IAQ L+GYSL +AD+LRRA
Sbjct: 655  LIPKFINRKNGSEKIDFPHPFIESILTETYGIMVYQEQIMKIAQDLAGYSLGDADLLRRA 714

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK   EM K +  FI G+ K G+ K IA ++F+ +  FA+Y FNKSH+ AY  ++YQT
Sbjct: 715  MGKKKVSEMVKHRNIFIEGSCKKGVDKKIANDLFDQMVLFAEYCFNKSHSTAYGAVTYQT 774

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K HYPV ++A+ +++   + +K++++  +     I+++ PS+N   +DF +  ++I 
Sbjct: 775  AFLKAHYPVAYMASLLSVNAGSSDKMQRYISNCYSMGIEVISPSINLSGIDFTIKKDQIL 834

Query: 837  YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF- 894
            + L+AIK +G +  R+I++       F S  D C R+ S  LN+R LESL+  GALD F 
Sbjct: 835  FGLSAIKNLGDSAIRNIIDNRNKLGVFKSFSDLCDRLPSNILNKRNLESLIHCGALDEFS 894

Query: 895  -GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL---EKFSVENSSV 950
               +R QL   L+ + ++A    ++R +   N+F       + + +L    K    +   
Sbjct: 895  ENNNRAQLFSDLEYVMEWASSRNRDRISGQGNLFDSISKNDTKEFSLSQGSKVEDYSLIE 954

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            + + E+++LGFY S HPL       + +      +   +     + L  M+   +Q  TR
Sbjct: 955  KLKLEKQLLGFYLSDHPLKHLAKPAKLVSPISISQLENSHDRTKVSLVGMIPELKQITTR 1014

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
            KG R+  V   + +   EA  FP
Sbjct: 1015 KGDRMAIVQLEDLSGSCEAIVFP 1037


>gi|68249339|ref|YP_248451.1| DNA polymerase III subunit alpha [Haemophilus influenzae 86-028NP]
 gi|68057538|gb|AAX87791.1| DNA polymerase III alpha subunit [Haemophilus influenzae 86-028NP]
          Length = 1159

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/1048 (38%), Positives = 591/1048 (56%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSFQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +          +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGADVKV----------KSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRG- 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 110  YNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     +       ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +   
Sbjct: 169  ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++           +   
Sbjct: 229  KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYF-----LPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE     L      +      Y +RL  EL+VI +M F GYFLI
Sbjct: 284  GDLSTEDFLVQKSKEGLEERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+ +++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFETEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     T  D +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A +VV+ 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1003 RIAMTKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|300715411|ref|YP_003740214.1| DNA polymerase III subunit alpha [Erwinia billingiae Eb661]
 gi|299061247|emb|CAX58356.1| DNA polymerase III subunit alpha [Erwinia billingiae Eb661]
          Length = 1160

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1049 (39%), Positives = 600/1049 (57%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL+VHS YS+++G      ++ K A+   PAI ITD  NL   ++F   A  
Sbjct: 1    MAE-PRFIHLRVHSDYSMVDGLAKTGPLVKKAASLGMPAIGITDYLNLCGLVKFYGGAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG    +                  +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60   QGVKPIIGADFKVS----------SDAMGDDLGQLTILAANNTGYQNLTLLISKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E+G EGLI+L+GG  G + +     +     + L  +++ F +R Y+
Sbjct: 110  GAAGPIIDRDWLIELG-EGLILLSGGRRGDVGQMLLRGNHAQVAECLAFYQQYFPERYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA  + +P+VATN   FL   D++AH++ +A+     +   
Sbjct: 169  ELIRTGRQDEETWVHAAVELAIANSIPVVATNEVCFLEAGDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL+   EM  +FSD+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPKNYSPQQYLRTEEEMCELFSDIPEALANSVEIAKRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L  K+  GLE RL      A  +     +Y +RL+ ELNVI +M F GYFLI
Sbjct: 284  GEMTTEDFLVMKSREGLEERLEFLFPDAAVRAEKRPEYDERLEIELNVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMEKRDLVIEHVAEMYGRKAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPEPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTQI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPLYCDENGNFPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINARRKKQGEP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP DD +++ +L    T  +FQLES GM+  ++ ++PD  ED+IALV+L+RPGP
Sbjct: 583  PIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDSFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         I   H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA   GI   +AV IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKNPVEMAKQRGGFEDGAKSRGIEGELAVKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGQYQ 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG       +EA  +   F  L D C+R D+KKLNRRVLE L
Sbjct: 823  FHVNDDGEIVYGIGAIKGVGEGPIEAFIEARNEGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            V +GA D  G  R  L+ +L    K A    K       ++F    +     + +     
Sbjct: 883  VMSGAFDRLGPHRAALMSALPEALKAADQHAKAEAIGQADMFGVLAEEPAHIEKSYADIK 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V+ + E+  LG Y +GHP++ Y   + +  G    ++   T RG       +VV+
Sbjct: 943  RWPEQVQLDGERETLGLYLTGHPINQYLKEIERYVGGMRLKDMHPTDRGKMTMAVGLVVA 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 1003 ARVMVTKRGNRIGICTLDDRSGRLEVMLF 1031


>gi|16272681|ref|NP_438899.1| DNA polymerase III subunit alpha [Haemophilus influenzae Rd KW20]
 gi|260579831|ref|ZP_05847661.1| DNA-directed DNA polymerase subunit III alpha [Haemophilus influenzae
            RdAW]
 gi|1169392|sp|P43743|DPO3A_HAEIN RecName: Full=DNA polymerase III subunit alpha
 gi|1573746|gb|AAC22399.1| DNA polymerase III, alpha subunit (dnaE) [Haemophilus influenzae Rd
            KW20]
 gi|260093115|gb|EEW77048.1| DNA-directed DNA polymerase subunit III alpha [Haemophilus influenzae
            RdAW]
          Length = 1159

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/1048 (38%), Positives = 591/1048 (56%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFIHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +          +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGADVKV----------KSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRG- 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 110  YNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     +       ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +   
Sbjct: 169  ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNTEDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++           +   
Sbjct: 229  KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYF-----LPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE     L      +      Y +RL  EL+VI +M F GYFLI
Sbjct: 284  GDLSTEDFLVQKSKEGLEERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+ +++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFETEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     T  D +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A +VV+ 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1003 RIAMTKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|159045497|ref|YP_001534291.1| DNA polymerase III subunit alpha [Dinoroseobacter shibae DFL 12]
 gi|157913257|gb|ABV94690.1| DNA polymerase III subunit alpha [Dinoroseobacter shibae DFL 12]
          Length = 1164

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 489/1053 (46%), Positives = 675/1053 (64%), Gaps = 43/1053 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL++H+ YSLLEGA+ L  + D +AA + PAIAITDTNN+F+ALE S+    
Sbjct: 1    MTQPPRFIHLRLHTEYSLLEGAMRLKKLPDLVAAAEMPAIAITDTNNMFAALEASEALSK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGIQPIIGCQ+D+           G+ P    P +VLL  T  GY+ L+ L + +Y +D+
Sbjct: 61   AGIQPIIGCQVDVA----FDPAAPGERPRAPAP-VVLLAQTEAGYENLMALNTCLY-VDK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G Q  +I +  L   G++ LI LTGG  GP+ R         A+  +    ++FGDRLYV
Sbjct: 115  GGQLPQITVEELAANGSD-LICLTGGPRGPLGRFLSAGQRPKAQALMARLAEIFGDRLYV 173

Query: 185  NLQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV-VS 241
             L RH G       E   + LAY   LPLVATN+  F     YEAHD L+ +A       
Sbjct: 174  ELHRHPGDPLCAETEPGFLDLAYDMNLPLVATNDVYFPDPGMYEAHDALICIAEGAYVDQ 233

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            Q  R R+T  HY K+++EM ++F+DLPEALENT+EIARRC+F                  
Sbjct: 234  QAPRRRLTDQHYFKSQTEMATLFADLPEALENTIEIARRCAFKAFKRD--------PILP 285

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++E  ELR ++  GL+ RLA   I      ++Y +RL+FEL++I  M F GYFLIVA
Sbjct: 286  RFAEDEVEELRRQSREGLKARLA--VIPHAAPVEEYEKRLEFELDIIEGMGFPGYFLIVA 343

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK   IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDID
Sbjct: 344  DFIKWAKDRGIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERISMPDFDID 403

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRR+EVI YVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL K+IP 
Sbjct: 404  FCMDRREEVIHYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSKMIPV 463

Query: 482  DPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +   PVS++  + D+ R  E   A+  V+RLL+   ++EGL R+ASTHAAG+VIGDRPL 
Sbjct: 464  EGVKPVSIEKALKDEPRLAEEAKAEEVVERLLKYGMQVEGLLRNASTHAAGVVIGDRPLD 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD--- 597
            +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT+++ ++  +   G  +    
Sbjct: 524  KLVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIENAVKLIRATGRDLHVAA 583

Query: 598  ---------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
                           ++ IP DD  +Y L  +  T+ +FQ+ES+GM  AL  M+P CIED
Sbjct: 584  DGTELYSPAPGTENDINAIPLDDEASYKLYASAKTVAVFQVESTGMMDALRRMKPTCIED 643

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            IIALV+LYRPGP++NI  Y   KNG  +   +HP +D +L ETQG+I+YQEQVMQIAQ +
Sbjct: 644  IIALVALYRPGPMENIPKYCEVKNGLSERDLLHPTVDHILDETQGIIVYQEQVMQIAQEM 703

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +GYSL  AD+LRRAMGKKI+E MD ++ +F++GA++NG+ K  A+ ++ LL KFA+YGFN
Sbjct: 704  AGYSLGGADMLRRAMGKKIQEAMDAERPKFLAGAAENGVDKDKALEVWHLLDKFANYGFN 763

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSV 821
            KSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ R+   ++I+PP V
Sbjct: 764  KSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYAEEVRRGLGLEIVPPCV 823

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
            N     F V + ++ Y L A+K VG      ++    DKPF +L D   RVD K++ +R 
Sbjct: 824  NRSRASFSVAEGKLVYGLGALKNVGADAMELVVTGRGDKPFATLFDLARRVDLKRVGKRP 883

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE L  AGA D    +R ++ QSLD +  Y+  + + R +   ++F  E G    +  + 
Sbjct: 884  LEMLARAGAFDQLDPNRRRVFQSLDGLVAYSAAIHEQRASAQVSLFG-EAGEDLPEPRIL 942

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNI-RLAA 999
                   + R   E + +GFY SGHPLD Y   L++ G+   E     +  G  + ++A 
Sbjct: 943  PCDDWLPAERLAEEHKAIGFYLSGHPLDDYMGALKRKGVVTLEALARKVETGAAVAKIAG 1002

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +  +Q++K+ +G+R  +V  S+P   YE   F
Sbjct: 1003 TIAGRQERKSARGNRFAFVQASDPTGLYEVTVF 1035


>gi|296129453|ref|YP_003636703.1| DNA polymerase III, alpha subunit [Cellulomonas flavigena DSM 20109]
 gi|296021268|gb|ADG74504.1| DNA polymerase III, alpha subunit [Cellulomonas flavigena DSM 20109]
          Length = 1187

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/1072 (32%), Positives = 529/1072 (49%), Gaps = 47/1072 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +     + PSFVHL VHS YS+L+GA  +  +LD+     Q A+AITD   LF A EF Q
Sbjct: 1    MAAGGTEDPSFVHLHVHSEYSMLDGAARIGEMLDEAKRLGQTAMAITDHGYLFGAFEFWQ 60

Query: 61   KACAAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
            KA   GI+PIIG +  +                        +       + LL  T EG 
Sbjct: 61   KATERGIKPIIGVEAYVTPGTSRFDQNRVRWGEAHQAADDVSARGAYTHLTLLSRTTEGM 120

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L  + S   +  Q  +  R+    L     +GLI  +G  SG I           A +
Sbjct: 121  HNLFRMGSLASVEGQMGKWPRMDRELLSRY-ADGLIATSGCPSGEIQTRLRLGHVDEALR 179

Query: 170  RLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                 + +FG +  +V +  H    +R     ++++A     P+VATN+  +  EED  A
Sbjct: 180  AAGELQDIFGKEHFFVEVMDHGLEIERRVIKDLLRIAEGIGAPIVATNDLHYTREEDAHA 239

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            H+VL+AV   + + +    +             V   +++        E       + + 
Sbjct: 240  HEVLLAVQSGSTLDEPTSDQGGSRFAFGGTGYYVKSAAEMRRTWAELPEACDNTLLVAEQ 299

Query: 288  HAPILP---RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                      ++ +      + E++    +   GL  R        G      R++ D+E
Sbjct: 300  CEVKFNTGANYMPRFPVPAGENEDSWFVKEVENGLLRRY------HGAIPDHVRKQADYE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
              VI ++ FSGYFL+VADFI WAKK  I VGPGRGS AGS+ +YA+ IT++DPL   L+F
Sbjct: 354  TGVITQLGFSGYFLVVADFINWAKKQGIRVGPGRGSAAGSMASYAMGITELDPLEHGLIF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+S PD D+DF + RR EVIRYV  KYG +RV QI+T+G+++AK AL+D  R 
Sbjct: 414  ERFLNPERVSWPDVDVDFDERRRGEVIRYVTEKYGDDRVCQIVTYGTIKAKQALKDASRV 473

Query: 465  LQMPYSQVDRLCKLI-PNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEIS 515
            L  P++  ++L K + P      +             A+   FR+   ADP   R+LE +
Sbjct: 474  LGFPFAMGEKLTKAMPPPVMGKDIPLSGMYDPEHPRYAEADEFRQVVAADPEAQRVLETA 533

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + LE L R    HAAG+++   PL  ++P+ +  +    +TQF+    E  GLIK DFLG
Sbjct: 534  RGLENLKRQWGVHAAGVIMSSEPLLDIIPIMKRPQDGAIITQFDQPASESLGLIKMDFLG 593

Query: 576  LKTLTLLQKSLDFLAQRGVKVD-LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L+ LT+L  +L+ +   G     +  +  DD  TY LL    TLG+FQL+   MR  L  
Sbjct: 594  LRNLTILDDALENIVMNGKPPILIEEVALDDPPTYELLGRGDTLGVFQLDGGPMRSLLRQ 653

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPMLKE----TQGV 688
            M+PD  ED+ A+++LYRPGP+      N        ++I  IHP +   L++    T G+
Sbjct: 654  MRPDNFEDVSAVIALYRPGPMGMNSHTNYALRKNGLQEIEPIHPELVEPLEDVVGVTYGL 713

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQV + AQ L+GYSL +AD+LRRAMGKK KE +DK+   F +G  + G S      
Sbjct: 714  IVYQEQVQRAAQKLAGYSLGQADLLRRAMGKKKKEVLDKEFVPFQAGMRERGYSDAAIQA 773

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++++L  FA Y FNK+H+AAY V+SY TA++K ++P E++AA +T   D+ +K   +  +
Sbjct: 774  VWDVLVPFAGYAFNKAHSAAYGVVSYWTAYLKANFPTEYMAALLTSVRDDKDKSALYLGE 833

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLED 867
             R   I ++PP VN+   +F      I + L A++ VG      I+ A  +   F S  D
Sbjct: 834  CRHMGITVLPPDVNSSSANFTAVGKDIRFGLTAVRNVGANVVDAIVAAREEKGAFTSFTD 893

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F  +V +   N+R +ESL+ AGA D  G++R  LL   +        V++       ++F
Sbjct: 894  FLDKVPAVVCNKRTIESLIKAGAFDSLGHARRALLLVHEQAVDAVIDVKRKEATGQFDLF 953

Query: 928  AHEKGTFS----DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            A   G         + +      +   R   E+ +LG Y S HPL   + +L        
Sbjct: 954  ADLGGGDETGTGIAVQIPDLPDWDKKQRLAFEREMLGLYVSDHPLSGLEHVLSAQADVSI 1013

Query: 984  EESV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                       G+ + +A +V S Q+K +++G+    VT  +     E  FF
Sbjct: 1014 ATLNADTERPDGSTVVVAGLVTSLQRKMSKQGNPWAAVTLEDMEGGVEIMFF 1065


>gi|242310657|ref|ZP_04809812.1| DNA polymerase III alpha subunit [Helicobacter pullorum MIT 98-5489]
 gi|239523055|gb|EEQ62921.1| DNA polymerase III alpha subunit [Helicobacter pullorum MIT 98-5489]
          Length = 1172

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1061 (34%), Positives = 596/1061 (56%), Gaps = 45/1061 (4%)

Query: 5    LEKSPS---------FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
            + K+P          F HL +H+ YSLL+G   +  +  +I      ++AITD  N+F A
Sbjct: 1    MSKTPDEVISQDKIPFTHLHLHTEYSLLDGLNKIKILAKRIKELGMDSVAITDHGNMFGA 60

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            +EF +     GI+PI+G +  +   + +   +  +        + L     +GY+ L+ L
Sbjct: 61   IEFYKAMKEQGIKPILGMEAYLHNAEEISDKSNQR------FHLCLYAKNLQGYKNLMYL 114

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF--------FNSSQVA 167
             S+  L        RI    L+E  +EGLI  +   +G +                 + A
Sbjct: 115  SSQACLYG-YYMKPRISKKMLRE-HSEGLICSSACLNGEVQWHLNLKKEDNKGRKGYERA 172

Query: 168  EKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            ++  L +K++FGD  Y+ L RH   ++   + Q++Q++    + ++ATN++ + ++ D  
Sbjct: 173  KEVALEYKEIFGDDFYLELMRHGIEEQQLIDKQIIQISLETGIKIIATNDTHYTNQGDST 232

Query: 227  AHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            A +V   +      +  +R R T  + Y+K+  +M  ++ DLPEA+ NT EIA +C+  L
Sbjct: 233  AQEVAFCIGFGKDFNDPNRMRHTVQEFYIKSPEQMAKLYMDLPEAIANTKEIADKCNLEL 292

Query: 286  QVHAPILPRFIEKECDDIQKEEE-----NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +  P  P F         +  +          K   GL+ RL      +    Q+Y++R
Sbjct: 293  HLGDPTPPSFKFTAEYAKAENLDFTQDSEYFAYKCREGLKKRLEN---VESSRHQEYKER 349

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            L+ E+ +I +MKF GY LIV DF++ AK+  IPVGPGRGS AGS+ A+ L IT+IDP+++
Sbjct: 350  LEKEIEIINKMKFPGYMLIVWDFVRAAKERGIPVGPGRGSAAGSLVAFCLEITNIDPMKY 409

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNP+R+SMPD D+DFCQ RR+E++ YV +KYG   VAQ+ITFG ++AKA +RD
Sbjct: 410  DLLFERFLNPERVSMPDIDMDFCQSRREEILEYVTDKYGRHNVAQVITFGMMKAKAVIRD 469

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            V R + MPY + D   KLIP +    +       + + +E    DP   ++ + +  LE 
Sbjct: 470  VARVMGMPYGEADAFAKLIPKELDITLEKA-FEKEPKIKELIDKDPLAKKIWDFAVVLEN 528

Query: 521  LYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
              R+  THAA +VI  +  L    P+YR  R  +  TQ++MK++E   LIKFDFLGLKTL
Sbjct: 529  TKRNPGTHAAAVVIDSEHELWHKAPLYRSTRDGIIATQYSMKYLEDVDLIKFDFLGLKTL 588

Query: 580  TLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            TL+  +L  +  R   ++D   +  +D + Y  L +  TLGIFQ+ESS  +   + ++P 
Sbjct: 589  TLVDDALKLIKNRHNLEIDFLKLDVNDKKVYETLQSGNTLGIFQIESSMFQGINKRLRPS 648

Query: 639  CIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
              EDIIA+++L RPGP+++ +   + +RK+GK  IV + P ++ +L+ T G I+YQEQVM
Sbjct: 649  TFEDIIAIIALGRPGPMESGMVSDFIDRKHGKAPIVYMFPELESILRPTYGTIVYQEQVM 708

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            QI Q + G+SL EAD++RRAMGKK  + M   K +F  GA K G ++  A  ++EL+ KF
Sbjct: 709  QIVQKIGGFSLGEADLIRRAMGKKDAQIMADNKNKFAQGAEKQGFNRAKAEELWELIVKF 768

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A YGFNKSH+AAYA+I+++TA++KT+YP EF+AA +T E ++ +KI ++ ++A + +I++
Sbjct: 769  AGYGFNKSHSAAYAMITFETAYLKTYYPKEFMAALLTSEKNSTDKIVEYIEEANKMDIKV 828

Query: 817  MPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
            +PP++    ++F V     ++ I + L AIKG G      I+E   +   F  LEDF SR
Sbjct: 829  LPPNIQKSELEFSVARIDDEDCILFGLGAIKGAGEVAINIILEERKNNGDFKDLEDFLSR 888

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            +D +K+N++ LE+ + +GA+DCFGY+R  LL+ ++ + + A+  +  +     ++F   +
Sbjct: 889  IDPQKVNKKSLEAFIKSGAMDCFGYTRRTLLEQVELLTENAKTAQIAKKEAENSLFGDSE 948

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
               +  + LE     +     E E+  LGFY SGHPL+ YK I++ +      +      
Sbjct: 949  EFTAIALELENKEEYSKKEILEFEKESLGFYASGHPLEDYKEIIKSINCAYTNQIQDIAE 1008

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++I L   +     K ++ G R G +   +     E   F
Sbjct: 1009 NSSILLVGSIEDVITKFSKSGKRYGILKLQDFYGSVELTIF 1049


>gi|85704828|ref|ZP_01035929.1| DNA polymerase III subunit alpha [Roseovarius sp. 217]
 gi|85670646|gb|EAQ25506.1| DNA polymerase III subunit alpha [Roseovarius sp. 217]
          Length = 1166

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 497/1057 (47%), Positives = 681/1057 (64%), Gaps = 47/1057 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  SP F+HL+VH+ YSLLEGA+ L  +    AA   PA+A+TDTNN+F+ALEFS  A  
Sbjct: 1    MSTSPRFIHLRVHTEYSLLEGAIRLKKLPSLCAAAGMPAVAVTDTNNMFAALEFSVSAQG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+D+D          G+   P  P +VLL     GY+ L++L S +YL   
Sbjct: 61   AGVQPIMGCQIDLDY----IALAPGERTKPPAP-LVLLGQNERGYENLMKLNSCLYLRGD 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     + LS L+    EG+I L+GG  GP+ R         AE  +    + FGDRLYV
Sbjct: 116  G-SLPHVTLSELKR-HAEGVICLSGGPDGPVGRLLQAGQRPGAEALMQRLMRAFGDRLYV 173

Query: 185  NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH         +R  E   +++AY   LPLVATN+  F   + YEAHD ++ VA   
Sbjct: 174  ELQRHPSDGGAPEAERLTERGHIEMAYAMGLPLVATNDVYFPKSDMYEAHDAMLCVADGA 233

Query: 239  VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q   R R+TP HY K++ EM ++F+DLPEALEN+VEIA RC+F              
Sbjct: 234  YVDQSAPRRRLTPQHYFKSQDEMAALFADLPEALENSVEIATRCAFGCYKRD-------- 285

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    +E  ELR +A AGL+ RLA   I      ++Y +RL+FEL +I  M F GYF
Sbjct: 286  PILPKFADDEVEELRRQARAGLQSRLA--VIPHAAPVEEYEERLEFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK  +IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKDQDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG +RV QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIQYVQEKYGRDRVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS++  +AD+ R RE    +  VDRLL  +Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALADEPRLREEAKNEEVVDRLLTYAQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---- 592
            RPL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + +     
Sbjct: 524  RPLDELVPVYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDMIRKTGRPL 583

Query: 593  --------------GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                          G + D+  IP DD ++Y L  +  T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  NVAADGTELYQPPEGFEYDIGAIPLDDEKSYRLYASAKTVAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG +++ SIHP ID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPTYCEVKNGLKELESIHPSIDYILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKI EEM K++ +F  GA +NG++K  A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAMENGVNKRKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + Q+ ++   +   
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLGLDWA 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
             P VN     F V D  ++Y+L A+K VG    + I    +D+ F +L D   RVD K++
Sbjct: 824  GPCVNHSEATFDVRDGVLHYALGALKNVGVEAMKLITAGRSDRSFATLYDVAQRVDLKRV 883

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             +R LE L  AGA D    +R ++ +S++ +  Y+  + + + +   ++F  E G    +
Sbjct: 884  GKRPLEMLARAGAFDALDRNRRRVFESIEALMSYSAAIHEQKNSNQVSLFG-EAGDDLPE 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--I 995
              L        + R   E + +GFY SGHPLD Y  +LR+  +K  +E  A        +
Sbjct: 943  PRLAPVDDWLPAERLTEEFKAVGFYLSGHPLDDYMTVLRRQDVKTLDEVTAQAERGPALV 1002

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++A +V  +Q++K+ +G+R  +   S+    +E   F
Sbjct: 1003 KMAGVVAGRQERKSARGNRFAFAQLSDTTGSFEVTIF 1039


>gi|325528701|gb|EGD05777.1| DNA polymerase III subunit alpha [Burkholderia sp. TJI49]
          Length = 1118

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1044 (39%), Positives = 607/1044 (58%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F Q+A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   KGIKPIAGCDVWITNPDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +   WL    +EGL+ L+G   G I  A    + + A +    + K+F    Y+
Sbjct: 110  YRGRAELDPGWLDGELSEGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q   LA + +LP+VAT+ + F++++D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T D Y + + EMV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   
Sbjct: 230  RRQKRFTTDQYFRTQDEMVALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GLE RLAQ    +         Y +RL+FE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSKEGLEKRLAQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKAD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              LS +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLSQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+S+  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMVKHREIFAEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCIVNNLVVLPPDINQSHYRFEPVAEAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ A
Sbjct: 826  GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRIVNRRTIEALIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R QLL S+    + A   +         +F     +      L      + 
Sbjct: 886  GAFDSLNTNRAQLLASVPLAMEAAD--QAEANALQAGLFDMGAES-PHAHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + + 
Sbjct: 943  KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKVGELKEGRDK---LVAGIIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MLIALLDDGTGQCEITIF 1022


>gi|257468959|ref|ZP_05633053.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185]
 gi|317063207|ref|ZP_07927692.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185]
 gi|313688883|gb|EFS25718.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185]
          Length = 1141

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/1036 (37%), Positives = 597/1036 (57%), Gaps = 35/1036 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ YSLL+G   +++ LD+       AIAITD  NLF  LE  +KA   GI+P+
Sbjct: 5    FVHLHLHTEYSLLDGVGKIDDYLDRAKVLGMQAIAITDHGNLFGVLELYKKAMKKGIKPV 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +     L+           +  +VLL    +GYQ L+++ S  Y+        R
Sbjct: 65   IGLEAYVSEFSMLEK-------DGRIFHLVLLAENNKGYQNLLKISSESYIKG-FYYKPR 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            I   +L +  +EG+I L+    G I R    N S +  ++ +  +  +FG D  Y+ +Q 
Sbjct: 117  IDKEFL-KNHSEGIIALSACMQGEIPRRILDNESEEKVDEIVNEYVDIFGKDNFYIEVQA 175

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +    +     ++  LA  H+L ++ATN++ +++E ++   D+L+ V     VS + R R
Sbjct: 176  NGVKGQTALNEKLYDLAQKHQLKMIATNDTHYVNEGEHTLQDILICVQTGAKVSDEKRMR 235

Query: 248  VTPDHYL--KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  D          +  + +   EA+ NTVEIA RC+  ++      P +    C    K
Sbjct: 236  IETDELFLKSREQIIDGLGAKYLEAVNNTVEIAERCNVDIEFGKFKFPDYKIPSC---AK 292

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E  LR     GL  R  QG            +R+++EL+VI +M ++ YF++V DFI 
Sbjct: 293  SIEEFLRKLVYFGLSKRYPQGLTVT------VLERVEYELSVIEKMGYAAYFVVVWDFID 346

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK+N IP+GPGRGS AGS+ AYAL IT++DPL ++L+FERFLNP+R+SMPD DID CQ+
Sbjct: 347  YAKRNRIPIGPGRGSAAGSLVAYALRITELDPLSYNLIFERFLNPERISMPDIDIDICQE 406

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YV  KYG ++VAQIITFG+++A+AA+RDVGR +    S++D + KL+P +   
Sbjct: 407  RRQEVIEYVIRKYGEDKVAQIITFGTMKARAAIRDVGRVMDTSLSKIDSVAKLVPFNATI 466

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                Q + +   F+   L DP + ++++IS +LE   RHAS HAAGIVI   PL+  VP+
Sbjct: 467  ---QQTLNNVEEFKNMYLNDPEIQKVIDISARLENKVRHASVHAAGIVITKDPLTDTVPL 523

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
            Y D ++ +  TQ+ MK +E  GL+K DFLGL+ LT LQ+++D++ +  G  ++LS IP +
Sbjct: 524  YSDNKNKIVSTQYQMKELEDLGLLKMDFLGLRNLTNLQRAIDYIKEDLGEDIELSEIPLN 583

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
              + Y +L+   T G+FQLES G+R+ L  ++PD  EDIIAL++LYRPGP+ + +V +  
Sbjct: 584  SKKVYEMLSRGDTSGVFQLESQGIRKILLKLKPDRFEDIIALLALYRPGPLGSGMVDDFI 643

Query: 665  KNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
                   +I+  HP ++  LKET GVI+YQEQVM+IA +++ YSL EAD+LRRAMGKK  
Sbjct: 644  NGKNGISEIIYPHPSLELTLKETYGVILYQEQVMKIANIMANYSLGEADLLRRAMGKKNV 703

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + M++ +E+F+  + +NG +K  A+ +FEL+ KFA YGFNKSH+AAYA+I+Y TA+ K +
Sbjct: 704  QIMEENREKFVERSMENGYTKEKAIEMFELIDKFAGYGFNKSHSAAYALIAYWTAYFKAY 763

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            Y   + A+ MT EM +VE I  + +DA+  N+++  P VN     F+V    I +SLAAI
Sbjct: 764  YMKHYYASLMTSEMSHVEDIAFYMEDAKAHNMKLHLPDVNRASSKFRVDKEGIIFSLAAI 823

Query: 843  KGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K VG   +  I+E  + +  + + EDF  R     LN++ LESL+ AGALD    +R Q 
Sbjct: 824  KNVGEGVSAKILEECNENGDYKNFEDFVVRTRKHGLNKKALESLILAGALDSLPGNRKQK 883

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             +S+D I  YA    K    +  N+F   K +     TL +    +       E+  LGF
Sbjct: 884  FESVDKILDYATRKIKEDEIQQMNLFGEAKSSLGV-FTLPQVPEYSLEELLAREKEYLGF 942

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL---AAMVVSKQQKKTRK-GSRIGW 1017
            YFS HPLD Y+ ++    +    E        ++++     ++   ++  T+K G  +  
Sbjct: 943  YFSAHPLDNYRRLIEVYRLSKISELKELKEEKSVQIFRTCGILREIKKIVTKKTGQIMCL 1002

Query: 1018 VTFSEPAKEYEANFFP 1033
                +  ++     FP
Sbjct: 1003 FELEDYYEKINCVVFP 1018


>gi|209522938|ref|ZP_03271495.1| DNA polymerase III, alpha subunit [Arthrospira maxima CS-328]
 gi|209496525|gb|EDZ96823.1| DNA polymerase III, alpha subunit [Arthrospira maxima CS-328]
          Length = 1219

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1079 (35%), Positives = 594/1079 (55%), Gaps = 64/1079 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L +HS YSLL+GA  L  ++ +      PAIA+TD   ++ A+E  +   + GI+P
Sbjct: 2    SFVGLHIHSDYSLLDGASQLPQLVSRAVELGMPAIALTDHGVMYGAIELIKICRSKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
            IIG ++ +   D        K         V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62   IIGNEMYVLNADVTVQQRGIKK-----YHQVVLAKNTQGYKNLVKLTTISHLKGFQGKGI 116

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L+E   EGLI+ +    G + +A       +A + +  +K++FGD  Y+ 
Sbjct: 117  FARPCINKELLEEYH-EGLIVTSACLGGEVPQAILQRRMDIARQTVEWYKRVFGDDYYLE 175

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR     +VQLA   E+ +VATN+S F+S  D EAHD L+ +    ++++ +
Sbjct: 176  IQDHGSPEDRIVNVALVQLAREFEVKIVATNDSHFISCNDVEAHDALLCINTQKLITEDN 235

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL---PEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            R R +   YLK+  EM+ +F D        E           +      +    I     
Sbjct: 236  RLRYSGTEYLKSAEEMMQLFRDHLPDEVIKEAIANTLEVAEKVEPYTGILGEPRIPDYPI 295

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                  +  L   A  GL+ RL     +       YR+RL++EL ++ +M F+ YFL+V 
Sbjct: 296  PPNHTADTYLEEIAWEGLKKRLNAQGRS--EIKPVYRERLEYELKMMQKMGFATYFLVVW 353

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D+I+ A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D D
Sbjct: 354  DYIKHARDNHIPVGPGRGSAAGSLVAYALQITNIDPVHHGLLFERFLNPERKSMPDIDTD 413

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDE+I+YV +KYG E+VAQIITF  + +KA L+DV R L +PYS+ D++ K+IP 
Sbjct: 414  FCIDRRDEMIKYVTSKYGEEKVAQIITFNRMTSKAVLKDVARVLGIPYSKSDQMAKMIPV 473

Query: 482  DPAHPVSLQAI----ADDSRFREARLADPSV--------------DRLLEISQKLEGLYR 523
                P  L+ +    +    F++A   D                  + ++++ ++EG  +
Sbjct: 474  SRGKPTKLKVMISDQSPSPEFKQAYDNDFVPIKNDAGEEVGTIAVRQWVDMAIRIEGTNK 533

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
                HAAG+VI  +PL ++VP+ R+      +TQ+ M+ IE  GL+K DFLGLK LT++Q
Sbjct: 534  TFGVHAAGVVISKQPLDEIVPLQRN-NDGSVITQYFMEDIEALGLLKMDFLGLKNLTIIQ 592

Query: 584  KSLDFLAQRGVKVDLSL--------------------IPFDDHETYHLLTTKGTLGIFQL 623
            ++L++++Q                             +P D  +TY +L      G+FQL
Sbjct: 593  RTLNYISQNHHLDIDPYNLAADERKAMDILAKGAVKKMPEDVAKTYKILERGDLEGLFQL 652

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM 681
            ESSGMRQ ++ ++P  IEDI ++++LYRPGP+D   I  + NRK+ +E I   H L++P+
Sbjct: 653  ESSGMRQIVKDLKPSSIEDISSILALYRPGPLDAGLIPQFINRKHKREPIRYEHKLLEPI 712

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            L ET G+++YQEQ+M++AQ L+GYSL +AD+LRRAMGKK   EM K +E FI GA++NG+
Sbjct: 713  LNETYGILVYQEQIMKMAQDLAGYSLGQADLLRRAMGKKKASEMQKHRETFIDGATRNGV 772

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
             + IA ++F+ + KFA+Y FNKSH+ AY  I+YQTA++K +YP E++AA +T    N +K
Sbjct: 773  PQNIAEHLFDQMVKFAEYCFNKSHSTAYGYITYQTAYLKANYPTEYMAALLTENSGNTDK 832

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-K 860
            ++ + +  +   I ++PP +N   VDF   +NRI + L+AIK VG     H++    +  
Sbjct: 833  VRAYIESCKHLGIDVVPPDINRSNVDFTPIENRIVFGLSAIKNVGDGAIEHLLSVREEGG 892

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            PF SL D C R++ + +N R LESL+ +GA D    +R Q ++ L+ +  +AQ   KNR 
Sbjct: 893  PFRSLADLCDRINLQMVNSRALESLIKSGAFDSLHANRKQSIEYLNIVIPWAQDRAKNRE 952

Query: 921  NKHENIFAH------EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
                N+F        E  + S +    K        + + E+ +LGFY S HPL      
Sbjct: 953  IGQTNLFDLVNYATTESNSPSGEPAFPKGDDYAPKDKLQFEKELLGFYVSDHPLKSLLDS 1012

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                     ++         +++A ++++ +   T+KG R+ ++   +   + +A  FP
Sbjct: 1013 GILPDNVTLDKLPEQKSKAAVKVAVILINIKPHLTKKGDRMAFLLLEDLTGQIDAVVFP 1071


>gi|145637722|ref|ZP_01793374.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittHH]
 gi|145269071|gb|EDK09022.1| DNA polymerase III subunit alpha [Haemophilus influenzae PittHH]
          Length = 1159

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/1048 (38%), Positives = 595/1048 (56%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +          +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGADVKV----------KSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQR-G 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 110  YNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVDFYQEFFADHFYL 168

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     +       ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +   
Sbjct: 169  ALSRTGRPNEERYIQAALKLAEHCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++       +   +   
Sbjct: 229  KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA     +         Y +RL  EL+VI +M F GYFLI
Sbjct: 284  GDLSTEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLQTAYDSDEEVRALIDMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT E+DN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEIDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     T  D +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHEDVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A ++V+ 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1003 RIAITKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|301169460|emb|CBW29060.1| DNA polymerase III alpha subunit [Haemophilus influenzae 10810]
          Length = 1159

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1048 (37%), Positives = 593/1048 (56%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +          +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGADVKV----------KSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQR-G 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 110  YNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     +       ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +   
Sbjct: 169  ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++       +   +   
Sbjct: 229  KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE     L      +      Y +RL  EL+VI +M F GYFLI
Sbjct: 284  GDLSTEDFLVQKSKEGLEERLVFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+ +++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRLVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT E+DN +KI     +  +  +++MPP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEIDNTDKIVGLYDECLRMGLKVMPPDINIGKHH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     T  D +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHEDVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A ++V+ 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1003 RIAITKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|269138108|ref|YP_003294808.1| DNA polymerase III, alpha subunit [Edwardsiella tarda EIB202]
 gi|267983768|gb|ACY83597.1| DNA polymerase III, alpha subunit [Edwardsiella tarda EIB202]
 gi|304558152|gb|ADM40816.1| DNA polymerase III alpha subunit [Edwardsiella tarda FL6-60]
          Length = 1162

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1051 (38%), Positives = 604/1051 (57%), Gaps = 41/1051 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL VHS YS+++G      ++ K+AA   PA AITD  NL   ++F   A  
Sbjct: 1    MAE-PRFIHLHVHSDYSMIDGLAKTAPLVKKVAALGMPAFAITDHTNLCGLVKFYGSAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+P++G  + +          + +T    + ++ +L    EGYQ L +L+S  Y    
Sbjct: 60   AGIKPLVGADVLV----------RSETMGDELSALTILACDNEGYQNLTQLISHAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G +   I   WL      GLI+L+G   G + +     +  +  + +  +++ F D  ++
Sbjct: 110  GAEGPTIDRDWLIAYRA-GLILLSGARHGDVGKLLLRGNQTLVGECVDFYQQHFPDSYFL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V+LA   +LPLVATN+  FL   D++AH++ +A+     +   
Sbjct: 169  ELVRTGRPDEESYLHLAVELAQQRDLPLVATNDVRFLEASDFDAHEIRVAIHDGYTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +   Y+++  EM  +F+DLPEAL+N+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSAQQYMRSEEEMCELFADLPEALQNSVEIAKRCNVTIRLGQ-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L  KA  GLE     L      +      Y +RL+ EL VI +M F GYFLI
Sbjct: 284  GEMSTEDFLVKKAHEGLEERLSFLFPDEADRARLRPPYDERLEIELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYSLKITDLDPLAFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V + YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDRVIDHVADMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  +  L 
Sbjct: 523  TDFAPLYCDAEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRARQGLD 582

Query: 600  L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                  IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PVDIAAIPLDDQKSFDILQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  + P+L+ T GVI+YQEQVMQIAQ+L+GYSL
Sbjct: 643  LQSGMVDNFIDRKHGREELSYPDREWQHESLKPVLEPTYGVILYQEQVMQIAQVLAGYSL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NG++  +A++IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRSVFEEGARNNGVNGELAMHIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS---ADKPFDSLEDFCSRVDSKKLNRRVLE 883
            F V D   I Y + AIKGVG      I+EA        F  L D C+R D+KKLNRRV+E
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARTDTKKLNRRVME 882

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEK 942
             L+ +GA D  G  R  L+ SL++  K A+   +       ++F    +     + +   
Sbjct: 883  KLIMSGAFDRLGPHRAALMSSLNDALKAAEQHARAEAIGQADMFGVLAEEPEQVEQSYGS 942

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMV 1001
                   +  + E+  LG Y +GHP+  Y   + +  G    ++   T RG       +V
Sbjct: 943  VPPWPVQMVLDGERETLGLYLTGHPITQYLKEIERYAGGGRLKDMHPTDRGKMTTAVGLV 1002

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  +   T++G+RIG  T  + +   E   F
Sbjct: 1003 LGARVMTTKRGNRIGMCTLDDRSGRLEVMLF 1033


>gi|219849373|ref|YP_002463806.1| DNA polymerase III subunit alpha [Chloroflexus aggregans DSM 9485]
 gi|219543632|gb|ACL25370.1| DNA polymerase III, alpha subunit [Chloroflexus aggregans DSM 9485]
          Length = 1260

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1055 (33%), Positives = 532/1055 (50%), Gaps = 46/1055 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS YSLL+G  +   I+ + A     +IA+TD   L+ A+EF + A  AGI+P
Sbjct: 3    DFVHLHVHSEYSLLDGYATTKGIVQRAADLGMDSIALTDHGVLYGAMEFYEAAKKAGIRP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG +  I          +G         ++LL     GY+ L++L +R +L   GK   
Sbjct: 63   IIGVEAYIAPGSLSDPMTKGAK---NYFHLLLLAQNETGYRNLVKLTTRAHLDGMGKGVF 119

Query: 128  -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
               RI    L+    EGLI+ +   +G +           A +    ++ L G DR Y+ 
Sbjct: 120  ARPRIDRHLLETYH-EGLIVTSACVAGELLHHLKHGDRHTAVETAAYYRDLLGPDRYYIE 178

Query: 186  LQRHR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV--- 240
            LQ H           ++V++A    +PLVAT+++ F+  ED E    +MA+  +      
Sbjct: 179  LQLHDNTPELEPLNDELVRIARELGIPLVATSDAHFIHPEDKETQHKVMAMGMNMTYAEF 238

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              +        H +   +          E LENT  I+  C   L+     LP F   E 
Sbjct: 239  CTRGYAMDESYHIMSGEAMWARFKRYGTEPLENTRRISDMCRLKLEFGRVQLPVFELPEG 298

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D      + LR     GL  R        G   + Y +RL++EL+VI +  F  Y LIV
Sbjct: 299  HD----AASYLRLVCEEGLMRRF------NGQPPETYLRRLEYELDVINQTGFPDYMLIV 348

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D++++A+   IP  P RGS   S+  YAL ITD+DP++  LLFERFL+P+R+ MPD D 
Sbjct: 349  WDYVKFARSRGIPCLP-RGSAGASLVLYALGITDVDPVKNKLLFERFLSPERLEMPDIDT 407

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR E++ Y+ NKYG E VAQIIT+G+L AKAA+RD+GR L +   +VDR+ KLIP
Sbjct: 408  DFADSRRQEILDYIANKYGRENVAQIITYGTLGAKAAIRDMGRVLGLDPGEVDRVAKLIP 467

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P      QAI      ++     P +  LL  +QK+EG  R   THA G+V+   PL 
Sbjct: 468  SLPVGTTIAQAIERVPELKQIYETQPHLRELLIEAQKVEGRMRSVGTHACGVVVSRTPLE 527

Query: 541  QLVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
            +LVP+ R  + +   +  F    + K GL+K D LGL  L+++ ++L ++ Q    ++ L
Sbjct: 528  ELVPLQRTTKDEHALMAAFEGATLAKMGLLKMDILGLTNLSVVAEALKYIEQTTGRRMWL 587

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD + +  L    T  +FQLES+GM + L  +QP  +ED+ A+V+LYRPGP++ I
Sbjct: 588  DEIPLDDPKVFAALGRGETKNVFQLESAGMTRYLMQLQPTRVEDLYAMVALYRPGPLEQI 647

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             VY   K+   +I  +HP+++P+L +T GVI+YQEQ+MQ+ Q ++ Y+L +A ++ +A+ 
Sbjct: 648  PVYIQNKHNPSQIRYLHPVLEPILSDTYGVIVYQEQIMQLLQTVADYTLGQAYIVIKAIS 707

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK KE M + +  F  G  + GISK +A  ++EL+  FA Y FN+ HA  Y ++SYQTAW
Sbjct: 708  KKNKELMAENEAIFKQGCQRKGISKEVADQLWELILPFAGYSFNRPHATLYGLLSYQTAW 767

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831
            +K +YPVE++ A +T     +E + K   +AR+  + ++PP VN     F +        
Sbjct: 768  LKVNYPVEYMTAVLTGAGGVIEDVTKAALEARRLGVAVLPPDVNRSHKGFTIEPLSPPLP 827

Query: 832  -----DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                 D  I + L AIK VG      I+ A  A  PF SLED C+RVD   LN+R LESL
Sbjct: 828  EGVKYDRGIRFGLMAIKNVGEGPVEAIIAAREAGGPFRSLEDLCARVDRHALNKRTLESL 887

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS- 944
            + AGALD    SR Q L  LD         +K R     ++F     + +    + +   
Sbjct: 888  IKAGALDSLPGSRRQKLAILDQAINAGVEAQKARDIGQSSLFDIFGESNTGSPNVARIPL 947

Query: 945  ------VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
                            E+ +LG   S  P+      +   G+           G  +   
Sbjct: 948  PIITETPAEQKEVLRWEKELLGLNLSDDPIAKALEGIDLTGVTDLGSLEEEHVGETLTFV 1007

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++   ++  T+KG  +   T  +     E   FP
Sbjct: 1008 GVLSGVRRIATKKGDSMVVATLEDMTGSIEIVVFP 1042


>gi|332098772|gb|EGJ03732.1| DNA polymerase III subunit alpha [Shigella boydii 3594-74]
          Length = 1144

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1032 (40%), Positives = 607/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57   ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNG++  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGVNAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V  D  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|119471146|ref|ZP_01613678.1| DNA polymerase III subunit alpha [Alteromonadales bacterium TW-7]
 gi|119445802|gb|EAW27084.1| DNA polymerase III subunit alpha [Alteromonadales bacterium TW-7]
          Length = 1163

 Score =  762 bits (1968), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1054 (40%), Positives = 589/1054 (55%), Gaps = 43/1054 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P FVHL+VHS +S+++G      I+ K    + PAIAITD  N    + F      
Sbjct: 1    MA-APDFVHLRVHSDFSMVDGLAKTKPIVAKAQELEMPAIAITDQMNFCGLVRFYGATHN 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G    +          +          I +L     GY+ +  L+S  Y    
Sbjct: 60   AGIKPIVGADFWL----------RSPEFPDEPCRITILAKDNVGYKNITLLISEAYQRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL     EGLI+L+G   G + +A   N+  V E  +  +K+ F +  Y+
Sbjct: 110  VFHRPVIDREWLAN-HKEGLIILSGAKDGDLGKALLKNNPGVIESVISFYKQHFSEHYYL 168

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R +R  +       V+LA   +LP+VATN  +FL  E++EAH++ +A+     +  K
Sbjct: 169  ELVRTNRPLEEDYLHMAVELAAKEQLPVVATNEVVFLKPENFEAHEIRVAIFDGYTLDDK 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP R + + YLK   +M  +FSD+PEAL+NTVEIA+RC+  +++       +   +   
Sbjct: 229  RRPKRFSEEQYLKTPEQMAELFSDIPEALQNTVEIAKRCNVTVKLGE-----YFLPDYPT 283

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 +  L   +  GLE     L      +     +Y +RL  EL VI +M F GYFLI
Sbjct: 284  GSLNIDEFLVKVSEDGLEERLQFLFPDEEDRKVKRVEYDERLAVELGVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDRRDEVIDHVSALYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + R +EA   D  V  L+++ + LEG  R+A  HA G+VI    +
Sbjct: 464  PGDPGMTL-AKAFEVEPRLQEAYDGDSEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +    +Y D     PVTQF+   +E AGL+KFDFLGL+TLT+LQ ++D    R  +    
Sbjct: 523  TDFAALYCDDEGKFPVTQFDKNDVETAGLVKFDFLGLRTLTILQWAVDMTNVRMQREGKD 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD ++  LL    T  +FQLES GM+  +  ++PDC ED+IALV+L+RPGP
Sbjct: 583  PVDINTIPLDDKKSIELLLRAETTAVFQLESRGMKDLVRRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVVYN-------NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V N         +         H  + P+L  T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKLGREEISYPDAQYQHESLKPILDPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSTFEDGARNNGIDGELAIKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT WMKTH+P EF+AA M+ +MDN +KI     +     + ++PP VN     
Sbjct: 763  AYALVSYQTLWMKTHHPAEFMAAVMSADMDNTDKIVILVDECENMKLTLLPPDVNAGEFK 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V     I Y + AIKGVG      I+EA     PF  L DFC+RVD K+LN+RV E L
Sbjct: 823  FTVNLQGEIVYGIGAIKGVGEAPVDAILEARAKGGPFKDLFDFCARVDLKRLNKRVTEKL 882

Query: 886  VFAGALDCFGYS-----RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KIT 939
            ++AGALD  G       R  LL SL +  + A    K       ++F        + +  
Sbjct: 883  IYAGALDKLGPEKNQAGRAILLASLKDAMRAADQHNKAEQLGQSDLFGLLATEPDEVEQA 942

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
              K +    +   E E+  LG Y +GHP++ Y+  LR        +   T R      A 
Sbjct: 943  FIKATGLTDNEWLEGEKDTLGLYLTGHPINQYRKELRYYTSGKLVDLQPTNRDVLSTAAG 1002

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +V+S +    +KG+R G +T  + +   +   FP
Sbjct: 1003 LVISARTLINKKGNRWGLITLDDKSARIDVRLFP 1036


>gi|309787142|ref|ZP_07681754.1| DNA polymerase III subunit alpha [Shigella dysenteriae 1617]
 gi|308924720|gb|EFP70215.1| DNA polymerase III subunit alpha [Shigella dysenteriae 1617]
          Length = 1144

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1032 (40%), Positives = 607/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57   ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  +
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEED 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V  D  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVSLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|291326493|ref|ZP_06124738.2| DNA polymerase III, alpha subunit [Providencia rettgeri DSM 1131]
 gi|291314103|gb|EFE54556.1| DNA polymerase III, alpha subunit [Providencia rettgeri DSM 1131]
          Length = 1144

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1032 (39%), Positives = 598/1032 (57%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K+A+   PA AITD  NL   + F   A  AGI+PIIG    ++   
Sbjct: 1    MIDGLAKTGPLVKKVASMGMPAFAITDFTNLCGLVRFYGAAHGAGIKPIIGADFYVE--- 57

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                    +     +  + +L    EGYQ L  L+S  Y    G     I   WL +   
Sbjct: 58   -------SELLGDEISHLTVLARNNEGYQNLTLLISEAYQKGYGAVGPTIKREWLAK-HK 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            +GLI+L+GG  G + +     +  + ++ L  ++  F D  Y+ L R    D        
Sbjct: 110  DGLILLSGGRKGDVGQFLLRGNQSLVDECLAFYETHFPDSYYLELVRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     ++   RP+  +P  YL++  E
Sbjct: 170  VELATKKGLPVVATNDVCFIESSDFDAHEIRVAIHDGFTLADPKRPKNYSPQQYLRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEALEN+VEIA+RC+  +++           +      + E+ L  ++  GL
Sbjct: 230  MCELFADIPEALENSVEIAKRCNVTIRLGEYF-----LPQFPTGDMKTEDFLVMRSKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +     +Y +RLD ELNVI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLEFLFPDEKIRAERRPEYDERLDIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V  
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAQ 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-KAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D   + PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL-----IPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K +L       IP  D +++ +
Sbjct: 524  QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKNLEPVDIAAIPLHDQKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V D   I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  + D C+RVD KK+NRRV+E L+ AGA D  G  R  L+
Sbjct: 824  GVGEGPIEAIVEARQQGGIFKEIFDLCARVDIKKINRRVMEKLIMAGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL++  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  SSLEDALKAADQHAKAEAIGQADMFGVLAEAPEQVESSYASVPKWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP+  Y   + +       ++   T RG    +  +V+S +   T++G+RIG  T 
Sbjct: 944  YLTGHPITRYLSEIERYTNGLRLKDVNPTPRGQVTTVVGLVLSAKVITTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   +   F
Sbjct: 1004 DDRSGRLDIMLF 1015


>gi|300816224|ref|ZP_07096447.1| DNA polymerase III subunit alpha [Escherichia coli MS 107-1]
 gi|309796361|ref|ZP_07690770.1| DNA polymerase III subunit alpha [Escherichia coli MS 145-7]
 gi|312970285|ref|ZP_07784467.1| DNA polymerase III subunit alpha [Escherichia coli 1827-70]
 gi|300531431|gb|EFK52493.1| DNA polymerase III subunit alpha [Escherichia coli MS 107-1]
 gi|308120065|gb|EFO57327.1| DNA polymerase III subunit alpha [Escherichia coli MS 145-7]
 gi|310337783|gb|EFQ02894.1| DNA polymerase III subunit alpha [Escherichia coli 1827-70]
 gi|323176499|gb|EFZ62091.1| DNA polymerase III subunit alpha [Escherichia coli 1180]
          Length = 1144

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1032 (40%), Positives = 607/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57   ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V  D  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|300824093|ref|ZP_07104213.1| DNA polymerase III subunit alpha [Escherichia coli MS 119-7]
 gi|300523370|gb|EFK44439.1| DNA polymerase III subunit alpha [Escherichia coli MS 119-7]
 gi|315616331|gb|EFU96949.1| DNA polymerase III subunit alpha [Escherichia coli 3431]
 gi|323160196|gb|EFZ46155.1| DNA polymerase III subunit alpha [Escherichia coli E128010]
 gi|323181692|gb|EFZ67106.1| DNA polymerase III subunit alpha [Escherichia coli 1357]
          Length = 1144

 Score =  762 bits (1967), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1032 (40%), Positives = 607/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57   ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V  D  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|52424629|ref|YP_087766.1| DNA polymerase III subunit alpha [Mannheimia succiniciproducens
            MBEL55E]
 gi|52306681|gb|AAU37181.1| DnaE protein [Mannheimia succiniciproducens MBEL55E]
          Length = 1159

 Score =  762 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1049 (38%), Positives = 597/1049 (56%), Gaps = 40/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS +S+++G   +  ++     +   A+A+TD  N    ++F  +A  
Sbjct: 1    MPE-PRFVHLRVHSDFSMIDGIAKVKPLVKTCVQENMVAMALTDFTNFCGLVKFYGEALG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GI+PI+G  + +          +          + LL     GY+ +  L+S+ Y    
Sbjct: 60   SGIKPIMGADVSV----------KSDLCGDEHFELTLLAKNNAGYKNITLLLSKAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF-NSSQVAEKRLLTFKKLFGDRLY 183
                  I   WL E   EG+I+L+GG  G + +      ++   E  +  ++K F D  Y
Sbjct: 110  E-DVPYIDQDWLAEY-NEGIIVLSGGRKGDVGKKLLKTGAADEVESAVGFYQKYFPDHYY 167

Query: 184  VNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            ++L R    +        ++LA  H LP+VATN+ +FL  ED+EAH++ +A+     +  
Sbjct: 168  LSLSRTGHNEEETYIKTALKLAEKHNLPVVATNDVVFLKSEDFEAHEIRVAIHDGFTLDD 227

Query: 243  KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RP+  +   Y ++  EM  +F+D+P ALENT+ IA+RC+  +++           +  
Sbjct: 228  PKRPKLYSDRQYFRSEQEMCELFADIPSALENTLLIAQRCNVTIRLGEYF-----LPQFP 282

Query: 302  DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              +   E+ L  +A  GLE RL         +      Y +RLD EL VI +M F GYFL
Sbjct: 283  TGELSTEDYLIKRAKDGLEERLKVLFPDEKEREEKRPAYDERLDTELGVINQMGFPGYFL 342

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF
Sbjct: 343  IVMEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC D RD+VI +V + YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL
Sbjct: 403  DVDFCMDNRDKVIEHVADMYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP DP   +  +A   + + ++   +D  V  L+++++KLEG+ R+A  HA G+VI    
Sbjct: 463  IPPDPGMTL-AKAFDAEPQLQQIYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPTL 521

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG----- 593
            ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R      
Sbjct: 522  ITDFSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMDRDGK 581

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              +D++ IP DD E+++LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPG
Sbjct: 582  PHIDINHIPLDDPESFNLLLKSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPG 641

Query: 654  PIDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+++ +V       +   +         H  + P+L+ T GVI+YQEQVMQIAQ L+GY+
Sbjct: 642  PLESGMVQNFIDRKHGREEVAYPDAQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYT 701

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+  F  GA + GI   +A+ IF+L+ KFA YGFNKSH+
Sbjct: 702  LGGADLLRRAMGKKKPEEMAKQRSVFEKGAIEKGIDGELAMKIFDLVEKFAGYGFNKSHS 761

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SYQT W+KTHYP EF+AA MT EMDN +KI     +  +  + + PP +NT   
Sbjct: 762  AAYALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLTVTPPDINTGKH 821

Query: 827  DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLES 884
             F V D   I Y + AIKGVG      ++ A      F  L D C+RVD KK+NRR  ES
Sbjct: 822  HFSVNDHGEIVYGIGAIKGVGEGPIEALVSAREKGGIFKDLFDLCARVDLKKINRRTFES 881

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKF 943
            L+ +GA D  G  R  L ++L++  K +    K+      ++F     +  + +I     
Sbjct: 882  LIMSGAFDKLGPHRAALSKNLEDALKASDQHAKDEAAGQADMFGVLTESPEEVEIAYANT 941

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
               +     + E+  LG Y S HP+  Y   L        ++ V  IRG     + +VV+
Sbjct: 942  PRWSEKQILDGERETLGLYLSSHPISRYLKELSHYSPNRLKDLVPNIRGQVSTASGLVVA 1001

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T+KG+R+G  T  + +   +   F
Sbjct: 1002 SRFAVTKKGNRLGIATLDDRSGRLDITLF 1030


>gi|145632094|ref|ZP_01787829.1| DNA polymerase III subunit alpha [Haemophilus influenzae 3655]
 gi|144987001|gb|EDJ93531.1| DNA polymerase III subunit alpha [Haemophilus influenzae 3655]
          Length = 1159

 Score =  762 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/1048 (38%), Positives = 593/1048 (56%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +          +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGADVKV----------KSTLCGDEYFYLTLLAKNNEGYKNITLLLSKAYQR-G 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   EG+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 110  YNDLPYIDQDWLIE-HREGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     +       ++LA    LPLVATN+ +FL  +D+EAH++ +A+     +   
Sbjct: 169  ALSRTGRPNEERYIQAALKLAERCNLPLVATNDVMFLKSDDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++       +   +   
Sbjct: 229  KRPKYYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA     +         Y +RL  EL+VI +M F GYFLI
Sbjct: 284  GDLSTEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVTETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +S +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLS-KAFEAEPQLQTAYDSDEEVQALIDMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFSPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPESFELLKRAETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAKYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT EMDN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  ESL
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFESL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     T  D +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A ++V+ 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+ +G  T  + +   +   F
Sbjct: 1003 RIAITKKGNSLGIATLDDRSGRLDLTLF 1030


>gi|261868771|ref|YP_003256693.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans D11S-1]
 gi|261414103|gb|ACX83474.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans D11S-1]
          Length = 1158

 Score =  762 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1046 (38%), Positives = 597/1046 (57%), Gaps = 38/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHLQVHS +S+++G   +  ++     +   A+ +TD  N    + F  +A ++G
Sbjct: 2    SQPRFVHLQVHSDFSMIDGIAKVKPLVKACVGNGMVAVGLTDFTNFCGLVRFYGEALSSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG  + +          Q          + LL    EGY+ +  L+S+ Y      
Sbjct: 62   VKPIIGTDVLV----------QSALCGDEKFRLTLLAKNNEGYKNITLLLSKAY-ERGYA 110

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E    G+I+L+GG +G + +    ++    +  +  +++ F D  Y+ L
Sbjct: 111  DWPYIDQQWLVE-HRAGVIVLSGGVNGDVGKKLLRSNPDELKSAVDFYREFFPDHFYLTL 169

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R     ++LA   +LP+VATN+  FL  ED+EAH++ +A+     +    R
Sbjct: 170  TRTGRPDEERYIKAALELAEQQQLPVVATNDVCFLQAEDFEAHEIRVAIHDGFTLDDPKR 229

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  T   Y ++  EM  +F+D+P ALENTV IA+RC+  +++       +   +     
Sbjct: 230  PKLYTSQQYFRSEQEMCDLFADVPSALENTVLIAQRCNVTIRLGE-----YFLPQFPTGD 284

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 285  LTTEDYLVKRAKDGLEERLKVLFPDEKVRAERRPEYDERLQVELDVINQMGFPGYFLIVM 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 345  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D RD VI +V   YGH  V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 405  FCMDGRDRVIDHVAEMYGHGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPP 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + + +E   AD  V  ++++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 465  DPGMTL-AKAFEAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITD 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R  K      
Sbjct: 524  FSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKLLV 583

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+S IP DD +++ +L    T  +FQLES GM+  ++ ++PDC EDIIALV+L+RPGP+ 
Sbjct: 584  DISAIPLDDQQSFDVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQ 643

Query: 657  NIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V       +   +         H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 644  SGMVDNFIDRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGG 703

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 704  ADLLRRAMGKKKPEEMAKQRSVFEEGAVKNGVDGGLAMKIFDLVEKFAGYGFNKSHSAAY 763

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT EMDN +KI     +  +  ++++PP +NT    F 
Sbjct: 764  ALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGLYDECMRMGLKVVPPDINTGKHHFS 823

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V +N  I Y + AIKGVG      ++EA   D  F +L D C+RVD KK+NRR  ESL+ 
Sbjct: 824  VNENGEIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIK 883

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946
            +GA D  G  R  L Q+L++  + +    K+      ++F     T  + + +    +  
Sbjct: 884  SGAFDKLGPHRAALQQNLEDALRASDQHAKDEALGQVDMFGVLTETNEEVENSYANIAPW 943

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                  + E+  LG Y S HP+  Y   L        +E V   RG     + +V++ + 
Sbjct: 944  TEKTILDGERETLGLYLSSHPVTRYLKELAHYSPVRLKELVPNYRGQMSTASGLVINTRV 1003

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T+KG+ IG  T  + +   +   F
Sbjct: 1004 AVTKKGNHIGIATIDDRSGRLDLTLF 1029


>gi|251798458|ref|YP_003013189.1| DNA polymerase III subunit alpha [Paenibacillus sp. JDR-2]
 gi|247546084|gb|ACT03103.1| DNA polymerase III, alpha subunit [Paenibacillus sp. JDR-2]
          Length = 1220

 Score =  762 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1033 (38%), Positives = 600/1033 (58%), Gaps = 13/1033 (1%)

Query: 5    LEK-SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +     SFVHL VHS YSLL+GA  + +++ + A     A+A+TD   ++ A+ F +   
Sbjct: 1    MNNIDSSFVHLHVHSEYSLLDGAARIRDLVARAAEQGMKALALTDHGVMYGAIPFYRACL 60

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            A GI+PIIGC++        +   +   P   +  ++LL     GY+ L++LVS  +L +
Sbjct: 61   ARGIKPIIGCEMYFTAGSRFEKGTRKDNP---IYHLILLAKNETGYRNLMKLVSIGHL-E 116

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  RI    L E  +EGL+ L+    G I +    +  + A    + +K++FGD  Y
Sbjct: 117  GFHYKPRIDPEVL-EAHSEGLVCLSSCLHGEISQHLLHDRREEALTAAMRYKRIFGDDFY 175

Query: 184  VNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ H   D+    + +++LA    + L ATN+  +L+ ED    DVL+ +     V  
Sbjct: 176  LELQDHGMLDQKKVAAAMIELARETGIKLTATNDVHYLTPEDAAVQDVLICIGTGKSVDD 235

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             DR ++ T   Y+K+  EM  +F  +PEA+ +T EIA +CS  L      LP F      
Sbjct: 236  TDRMKMGTDQLYMKSGEEMELLFRHVPEAIRHTAEIADKCSLELTFGRAALPVFRPVPGG 295

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                    EL    +A     L Q +    Y  Q    RL +EL+VI  M FS YFLIV 
Sbjct: 296  MTSTAYLAELCRSGLASRYAGLPQWSEDPAYREQA-EARLAYELSVIENMGFSDYFLIVW 354

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DF+++A +  I  GPGRGS AGS+ AY L ITD+DPL++ LLFERFLNP+R++MPD DID
Sbjct: 355  DFVRFAHEQGIRTGPGRGSSAGSLVAYVLRITDVDPLKYKLLFERFLNPERITMPDIDID 414

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RRDEVI YV  KYG E VAQIITFG++ AKAA+RDVGRA+ +P+++VDR  K+IPN
Sbjct: 415  FNDERRDEVIAYVSAKYGDEHVAQIITFGTMAAKAAVRDVGRAMNVPFAEVDRAAKMIPN 474

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +    +      REA    P  D +++++ K+EG+ RHASTHAAG+VI   PL+ 
Sbjct: 475  QLHITLEEA-LRISEGLREACQRQPRTDAMIKMALKVEGMPRHASTHAAGVVISGGPLTD 533

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSL 600
             VP+         +TQ++M+ +E  GL+K DFLGL+TL+++++SL ++    G ++D   
Sbjct: 534  YVPLQ-AGSERTALTQYSMEHLEAVGLLKMDFLGLRTLSIVERSLAWVKGLYGKEIDFRK 592

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P +D +TY +L    T+GIFQLESSG+R+ L+ M+P   EDI+++++LYRPGP++ I  
Sbjct: 593  VPDNDPDTYAMLGRGETMGIFQLESSGVRRVLKEMKPSEFEDIVSVLALYRPGPMEFIPN 652

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y   K+G   +   HP ++P+L +T G+I+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK
Sbjct: 653  YIQGKHGLAPVKYPHPSLEPILSDTYGIIVYQEQIMQIASAMAGFSLGEADLLRRAVSKK 712

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             +E +D+Q+  F+ G+   G +   A  +++++ +FADYGF ++HAAAY V+++QTAW+K
Sbjct: 713  KREVLDEQRAHFVKGSVSEGYTSEDANLVYDMIVRFADYGFPRAHAAAYGVLAFQTAWLK 772

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYP+ F+A+ +     N  K  ++  + R+  I+++PP VN   V F   +  + + LA
Sbjct: 773  AHYPIPFMASMLASVTGNQRKTAEYVDECRRMGIEVLPPDVNESGVTFTPVEGAVRFGLA 832

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIK VGT     I +   ++PFDSL D C RVD + +N+RVLESL+ AGAL+     R Q
Sbjct: 833  AIKNVGTQAIEAIEKERRERPFDSLLDLCRRVDLRVVNKRVLESLIQAGALESLPGHRAQ 892

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             L +L+   + A    K R      +F  ++    D + L      ++  + E E+ +LG
Sbjct: 893  QLAALEETVEAALKWRKEREELQIELFGFDEVQNWD-VELPDIRPYSTGEQLELERELLG 951

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             Y SGHPLD  +  L  +G+  + E      G    + A VVS +    +KG+ +G++  
Sbjct: 952  LYLSGHPLDAVEEQLEPLGLDRFIELGEAAEGAAAFIGARVVSLKPFTNKKGNAMGFIEI 1011

Query: 1021 SEPAKEYEANFFP 1033
             +     E   FP
Sbjct: 1012 EDRVMRAEGVVFP 1024


>gi|309973764|gb|ADO96965.1| DNA polymerase III alpha subunit [Haemophilus influenzae R2846]
          Length = 1159

 Score =  762 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/1048 (37%), Positives = 595/1048 (56%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1    MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +          +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61   SGMKPIIGTDVKV----------KSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQR-G 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 110  YNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVDFYQEFFADHFYL 168

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     +       ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +   
Sbjct: 169  ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++       +   +   
Sbjct: 229  KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKG---YHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RLA     +         Y +RL  EL+VI +M F GYFLI
Sbjct: 284  GDLSTEDFLVQKSKEGLEERLAFLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTL-AKAFEAEPQLQTAYDSDEEVRALIDMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523  TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583  RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P EF+AA MT E+DN +KI     +  +  +++ PP +N     
Sbjct: 763  AYALVSYQTLWLKTHFPAEFMAAVMTSEIDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y + AIKGVG      ++ A  +   F  L D C+RVD KK+NRR  E+L
Sbjct: 823  FSVNEQGEIVYGIGAIKGVGEGPIEALVTARNEGGIFKDLFDLCARVDLKKINRRTFENL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     T  + +       
Sbjct: 883  IMSGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHEEVENAYANTP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++     RG    +A ++V+ 
Sbjct: 943  PYTEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLLVAS 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1003 RIAITKKGNRLGIATLDDRSGRLDLTLF 1030


>gi|323165885|gb|EFZ51667.1| DNA polymerase III subunit alpha [Shigella sonnei 53G]
          Length = 1144

 Score =  762 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1032 (40%), Positives = 607/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57   ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V  D  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|260576275|ref|ZP_05844267.1| DNA polymerase III, alpha subunit [Rhodobacter sp. SW2]
 gi|259021543|gb|EEW24847.1| DNA polymerase III, alpha subunit [Rhodobacter sp. SW2]
          Length = 1144

 Score =  762 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 503/1039 (48%), Positives = 666/1039 (64%), Gaps = 32/1039 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             SP F+HL+VH+ +SLLEGA+ +  ++    A   PA+AITDTNN+F+ALEFS  A +AG
Sbjct: 2    SSPRFIHLRVHTEHSLLEGAVPVQKLIGLCVAQSMPAVAITDTNNMFAALEFSTYAASAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +QPIIGCQ+ +           G+ P    P IVLL  +  GY  L++L + +Y+  +  
Sbjct: 62   VQPIIGCQVSLAHD----PAGPGERPRAAAP-IVLLAQSEAGYLNLMKLNTCLYI-GKAG 115

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            Q  ++ ++ L      GLI LTGG  GP+ R         A+  L     ++  RLY+ L
Sbjct: 116  QLPQLTVAELAA-HARGLICLTGGPDGPLGRFLQAGQRPKAQALLEKLAAIYPGRLYIEL 174

Query: 187  QRHRGY-------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            QRH G        +R  E  +V++AY   LPLVATN+  F     YEAHD L+ +A    
Sbjct: 175  QRHPGAGEQLPEAERASERGLVEMAYAMGLPLVATNDVYFPKAAMYEAHDALLCIAEGAY 234

Query: 240  -VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
               Q  R R+TP HY K  +EM ++F+DLPEALEN+VEIARRC+F +             
Sbjct: 235  VDQQGPRRRLTPQHYFKTEAEMATLFADLPEALENSVEIARRCAFKVAKRD--------P 286

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                   +E  ELR +A  GL  RLA   I       +Y  RL FEL +I +MKF GYFL
Sbjct: 287  ILPKFADDEVEELRRQAGEGLAARLA--IIPHAVPVAEYEARLAFELGIIEKMKFPGYFL 344

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVADFI+WAK   IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMPDF
Sbjct: 345  IVADFIKWAKGQGIPVGPGRGSGAGSLVAYALTITDLDPLRYKLLFERFLNPERVSMPDF 404

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFC DRR EVI YVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL K+
Sbjct: 405  DIDFCMDRRQEVIEYVQQKYGRDKVGQIITFGALLSKAAIRDVGRVLQMPYGQVDRLSKM 464

Query: 479  IPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP +   PVS+   +AD+ R REA      V RLL+  Q++EGL R+ASTHAAG+VIGDR
Sbjct: 465  IPVEGVKPVSITKALADEPRLREAAKE-EVVARLLDYGQQIEGLLRNASTHAAGVVIGDR 523

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            PL +LVP+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q +L+ LAQRG+ +D
Sbjct: 524  PLDELVPLYQDPRSDMPATQFNMKWVEAAGLVKFDFLGLKTLTVIQNALELLAQRGIDID 583

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +SLIP DD +TY L  +  T+ +FQ+ESSGM  AL  M+P CIEDI+ALV+LYRPGP++N
Sbjct: 584  ISLIPLDDAKTYELYASARTVAVFQVESSGMMDALRRMKPTCIEDIVALVALYRPGPMEN 643

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y   KNG  +I SIHP ID +L ETQG+I+YQEQVM+I Q+++GYSL  AD+LRRAM
Sbjct: 644  IPTYCEVKNGLRQIESIHPTIDHILAETQGIIVYQEQVMEIGQVMAGYSLGGADLLRRAM 703

Query: 718  GKKIKEEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            GKKI  EM K++ +FI   A  +G+SK  A  +F+LL KFA+YGFNKSHAAAYAV+SYQT
Sbjct: 704  GKKIAAEMAKERPKFIEGAAKTHGVSKEKAGEVFDLLEKFANYGFNKSHAAAYAVVSYQT 763

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            AW+K ++PVEF+A  M  ++   +K+  + ++  +  I+ + P VN     F V D  + 
Sbjct: 764  AWLKANHPVEFMAGVMNCDIHLTDKLAVYKREVDKLGIRTVAPCVNASLASFSVRDGAVV 823

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            Y+L A+K VG    + I EA   KPF SL D   RVD K++ +R LE L  AGA D    
Sbjct: 824  YALGALKNVGVEAMKLITEARGAKPFASLFDLARRVDLKRIGKRPLEMLARAGAFDVLDS 883

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R ++  +LD +  Y+  + + R +   ++F  E G    +  L          R   E 
Sbjct: 884  NRARVFDALDALGSYSAAIHEARNSNQVSLFG-EAGADLPEPRLPFRDDWLPVERLSQEH 942

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNN--IRLAAMVVSKQQKKTRKGS 1013
            + +GFY SGHPLD Y   L++  +    E  +     +    ++A  V S+Q+KK+ KG+
Sbjct: 943  QAIGFYLSGHPLDDYMGPLKRKQVMTLHELHLRATENSPLIAKIAGSVASRQEKKSAKGN 1002

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            R  +V+ S+P   YE   F
Sbjct: 1003 RFAFVSLSDPTGLYEVTVF 1021


>gi|323157979|gb|EFZ44081.1| DNA polymerase III subunit alpha [Escherichia coli EPECa14]
          Length = 1144

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1032 (40%), Positives = 606/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57   ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +  + ++ +  +++ F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNRALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V  D  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|291567264|dbj|BAI89536.1| DNA polymerase III alpha subunit [Arthrospira platensis NIES-39]
          Length = 1219

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1079 (35%), Positives = 595/1079 (55%), Gaps = 64/1079 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L +HS YSLL+GA  L  ++ +      PAIA+TD   ++ A+E  +   + GI+P
Sbjct: 2    SFVGLHIHSDYSLLDGASQLPQLVSRAVELGMPAIALTDHGVMYGAIELIKICRSKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
            IIG ++ I   D        K         V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62   IIGNEMYILNADVTVQQRGIKK-----YHQVVLAKNTQGYKNLVKLTTISHLKGFQGKGI 116

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L+E   EGLI+ +    G + +A       +A + +  +K++FGD  Y+ 
Sbjct: 117  FARPCINKELLEEYH-EGLIVTSACLGGEVPQAILQRRMDIARQTVEWYKRVFGDDYYLE 175

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR     +VQLA   E+ +VATN+S F+S  D EAHD L+ +    ++++ +
Sbjct: 176  IQDHGSPEDRIVNVALVQLAREFEVKIVATNDSHFISCNDVEAHDALLCINTQKLITEDN 235

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL---PEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            R R +   YLK+  EM+ +F D        E           +      +    I     
Sbjct: 236  RLRYSGTEYLKSAEEMMQLFRDHLPDEVIKEAIANTLEVAEKVEPYTGILGEPRIPDYPI 295

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                  +  L   A  GL+ RL     +       YR+RL++EL ++ +M F+ YFL+V 
Sbjct: 296  PPNHTADTYLEEIAWEGLKKRLNAQGRS--EIKPVYRERLEYELKMMQKMGFATYFLVVW 353

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D+I+ A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D D
Sbjct: 354  DYIKHARDNHIPVGPGRGSAAGSLVAYALQITNIDPVHHGLLFERFLNPERKSMPDIDTD 413

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDE+I+YV +KYG E+VAQIITF  + +KA L+DV R L +PYS+ D++ K+IP 
Sbjct: 414  FCIDRRDEMIKYVTSKYGEEKVAQIITFNRMTSKAVLKDVARVLGIPYSKSDQMAKMIPV 473

Query: 482  DPAHPVSLQAI----ADDSRFREARLADPSV--------------DRLLEISQKLEGLYR 523
                P  L+ +    +    F++A   D                  + ++++ ++EG  +
Sbjct: 474  SRGKPTKLKVMISDQSPSPEFKQAYDNDFVPIKNDAGEEVGTIAVRQWVDMAIRIEGTNK 533

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
                HAAG+VI  +PL ++VP+ R+      +TQ+ M+ IE  GL+K DFLGLK LT++Q
Sbjct: 534  TFGVHAAGVVISKQPLDEIVPLQRN-NDGSVITQYFMEDIESLGLLKMDFLGLKNLTIIQ 592

Query: 584  KSLDFLAQRGVKVDLSL--------------------IPFDDHETYHLLTTKGTLGIFQL 623
            ++L++++Q                             +P D  +TY +L      G+FQL
Sbjct: 593  RTLNYISQNHHLDIDPYNLAAEERKAMDILAKGSVKKMPEDVAKTYKILERGDLEGLFQL 652

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM 681
            ESSGMRQ ++ ++P  IEDI ++++LYRPGP+D   I  + NRK+ +E I   H L++P+
Sbjct: 653  ESSGMRQIVKDLKPSSIEDISSILALYRPGPLDAGLIPQFINRKHKREPIRYEHKLLEPI 712

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            L ET G+++YQEQ+M++AQ L+GYSL +AD+LRRAMGKK   EM K +E FI GA++NG+
Sbjct: 713  LNETYGILVYQEQIMKMAQDLAGYSLGQADLLRRAMGKKKASEMQKHRETFIDGATRNGV 772

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
             + IA ++F+ + KFA+Y FNKSH+ AY  I+YQTA++K +YP E++AA +T    N +K
Sbjct: 773  PQNIAEHLFDQMVKFAEYCFNKSHSTAYGYITYQTAYLKANYPTEYMAALLTENSGNTDK 832

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-K 860
            +K + +  +   I ++PP +N   VDF   +NRI + L+AIK VG     H++    +  
Sbjct: 833  VKAYIESCKHLGIDVVPPDINRSNVDFTPIENRIVFGLSAIKNVGDGAIEHLLSVREEGG 892

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            PF SL D C R++ + +N R LESL+ +GA D    +R Q ++ L+ +  +AQ   KNR 
Sbjct: 893  PFRSLADLCDRINLQMVNSRALESLIKSGAFDSLHANRKQSIEYLNIVIPWAQDRAKNRE 952

Query: 921  NKHENIFAH------EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
                N+F        E  + S + T  K        + + E+ +LGFY S HPL      
Sbjct: 953  IGQTNLFDLVNYANTESNSPSGEPTFPKSDDYAPKDKLQFEKELLGFYVSDHPLKSLLDS 1012

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                     ++         +++AA +++ +   T+KG R+ ++   +   + +A  FP
Sbjct: 1013 GVLPDNVTVDKLSEQKSKAAVKVAATLINIKPHLTKKGDRMAFLLLEDLTGQIDAVVFP 1071


>gi|284051053|ref|ZP_06381263.1| DNA polymerase III subunit alpha [Arthrospira platensis str. Paraca]
          Length = 1219

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1079 (35%), Positives = 595/1079 (55%), Gaps = 64/1079 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L +HS YSLL+GA  L  ++ +      PAIA+TD   ++ A+E  +   + GI+P
Sbjct: 2    SFVGLHIHSDYSLLDGASQLPQLVSRAVELGMPAIALTDHGVMYGAIELIKICRSKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
            IIG ++ I   D        K         V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62   IIGNEMYILNADVTVQQRGIKK-----YHQVVLAKNTQGYKNLVKLTTISHLKGFQGKGI 116

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L+E   EGLI+ +    G + +A       +A + +  +K++FGD  Y+ 
Sbjct: 117  FARPCINKELLEEYH-EGLIVTSACLGGEVPQAILQRRMDIARQTVEWYKRVFGDDYYLE 175

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR     +VQLA   E+ +VATN+S F+S  D EAHD L+ +    ++++ +
Sbjct: 176  IQDHGSPEDRIVNVALVQLAREFEVKIVATNDSHFISCNDVEAHDALLCINTQKLITEDN 235

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL---PEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            R R +   YLK+  EM+ +F D        E           +      +    I     
Sbjct: 236  RLRYSGTEYLKSAEEMMQLFRDHLPDEVIKEAIANTLEVAEKVEPYTGILGEPRIPDYPI 295

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                  +  L   A  GL+ RL     +       YR+RL++EL ++ +M F+ YFL+V 
Sbjct: 296  PPNHTADTYLEEIAWEGLKKRLNAQGRS--EIKPVYRERLEYELKMMQKMGFATYFLVVW 353

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D+I+ A+ N+IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D D
Sbjct: 354  DYIKHARDNHIPVGPGRGSAAGSLVAYALQITNIDPVHHGLLFERFLNPERKSMPDIDTD 413

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDE+I+YV +KYG E+VAQIITF  + +KA L+DV R L +PYS+ D++ K+IP 
Sbjct: 414  FCIDRRDEMIKYVTSKYGEEKVAQIITFNRMTSKAVLKDVARVLGIPYSKSDQMAKMIPV 473

Query: 482  DPAHPVSLQAI----ADDSRFREARLADPSV--------------DRLLEISQKLEGLYR 523
                P  L+ +    +    F++A   D                  + ++++ ++EG  +
Sbjct: 474  SRGKPTKLKVMISDQSPSPEFKQAYDNDFVPIKNDAGEEVGTIAVRQWVDMAIRIEGTNK 533

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
                HAAG+VI  +PL ++VP+ R+      +TQ+ M+ IE  GL+K DFLGLK LT++Q
Sbjct: 534  TFGVHAAGVVISKQPLDEIVPLQRN-NDGSVITQYFMEDIESLGLLKMDFLGLKNLTIIQ 592

Query: 584  KSLDFLAQRGVKVDLSL--------------------IPFDDHETYHLLTTKGTLGIFQL 623
            ++L++++Q                             +P D  +TY +L      G+FQL
Sbjct: 593  RTLNYISQNHHLDIDPYDLAANERKAMDILAKGSVKKMPEDVAKTYKILERGDLEGLFQL 652

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM 681
            ESSGMRQ ++ ++P  IEDI ++++LYRPGP+D   I  + NRK+ +E I   H L++P+
Sbjct: 653  ESSGMRQIVKDLKPSSIEDISSILALYRPGPLDAGLIPQFINRKHKREPIRYEHKLLEPI 712

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            L ET G+++YQEQ+M++AQ L+GYSL +AD+LRRAMGKK   EM K +E FI GA++NG+
Sbjct: 713  LNETYGILVYQEQIMKMAQDLAGYSLGQADLLRRAMGKKKASEMQKHRETFIDGATRNGV 772

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
             + IA ++F+ + KFA+Y FNKSH+ AY  I+YQTA++K +YP E++AA +T    N +K
Sbjct: 773  PQNIAEHLFDQMVKFAEYCFNKSHSTAYGYITYQTAYLKANYPTEYMAALLTENSGNTDK 832

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-K 860
            +K + +  +   I ++PP +N   VDF   +NRI + L+AIK VG     H++    +  
Sbjct: 833  VKAYIESCKHLGIDVVPPDINRSNVDFTPIENRIVFGLSAIKNVGDGAIEHLLSVREEGG 892

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            PF SL D C R++ + +N R LESL+ +GA D    +R Q ++ L+ +  +AQ   KNR 
Sbjct: 893  PFRSLADLCDRINLQMVNSRALESLIKSGAFDSLHANRKQSIEYLNIVIPWAQDRAKNRE 952

Query: 921  NKHENIFAH------EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
                N+F        E  + S + T  K        + + E+ +LGFY S HPL      
Sbjct: 953  IGQTNLFDLVNYANTESNSPSGEPTFPKSDDYAPKDKLQFEKELLGFYVSDHPLKSLLDS 1012

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                     ++         +++AA +++ +   T+KG R+ ++   +   + +A  FP
Sbjct: 1013 GVLPDNVTVDKLSEQKSKAAVKVAATLINIKPHLTKKGDRMAFLLLEDLTGQIDAVVFP 1071


>gi|167585898|ref|ZP_02378286.1| DNA polymerase III, alpha subunit [Burkholderia ubonensis Bu]
          Length = 1104

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F ++A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   KGIKPIAGCDVWIANPDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL     +GL+ L+G   G I  A    + + A +    + K+F    Y+
Sbjct: 110  YRGRAELDASWLDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q   LA   +LP+VAT+ + F++++D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAATLAAELKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T D Y + + +M ++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   
Sbjct: 230  RRQKRFTTDQYFRTQDDMAALFADLPSAVANTVEIAKRCNLTLELGKPKLPLFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GLE    +L      +      Y +RL+FE   I +M F GYFLI
Sbjct: 290  L----DDYLIQLSKEGLEKRLVQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKAD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDAASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM + +E F +GA+KNG+S+  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAEHREIFAAGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ A
Sbjct: 826  GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R QLL S+    + A   E N       +F     +      L      + 
Sbjct: 886  GAFDSLNANRAQLLASVPLAMEAADQAEANAM--QAGLFDMGAES-PHAHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + + 
Sbjct: 943  KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKVGELKEGRDK---VVAGVIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MLIALLDDGTGQCEITIF 1022


>gi|152990427|ref|YP_001356149.1| DNA polymerase III subunit alpha [Nitratiruptor sp. SB155-2]
 gi|151422288|dbj|BAF69792.1| DNA polymerase III, alpha subunit [Nitratiruptor sp. SB155-2]
          Length = 1174

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/1060 (36%), Positives = 600/1060 (56%), Gaps = 47/1060 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+F HL +H+ YSLL+GA  +  +  K       A+A+TD  N+F A++F +   A G++
Sbjct: 3    PNFTHLHLHTEYSLLDGANKIKALAKKAKELGMSAVAMTDHGNMFGAIDFYKTMKAEGLK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG +  +   D+L     G         + L      GY+ L+ L S  Y+       
Sbjct: 63   PIIGMEAYLHNSDDL-----GDKSTRQRFHLCLFAKNEIGYKNLMFLSSMSYIKG-FYYY 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN---------SSQVAEKRLLTFKKLFG 179
             RI    L E  +EGLI  +    G ++     N           + A+K  L +K++FG
Sbjct: 117  PRINKKLLAE-HSEGLICTSACLQGEVNWHLNTNERNTKFGAKGYEEAKKVALWYKEVFG 175

Query: 180  DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            D  Y+ L RH  +D+   + Q+++L+    + +VATN++ +L ++D E H+  M +A + 
Sbjct: 176  DDFYLELMRHGIHDQLAIDEQIIKLSLETGIKIVATNDTHYLEKKDAEPHEAFMCIAMNK 235

Query: 239  VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI- 296
            +    +R R +  + YLK+  E+  +++D+PEALENT EI  +C+  L +  P  P F  
Sbjct: 236  LYDDPNRLRHSVHEFYLKSPEEIAKLYADIPEALENTQEIVDKCNLELNLGNPTPPNFKF 295

Query: 297  -----------EKECDDIQKEEENELRN-KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                           +    E +  L       GL+ RL           Q Y  RL  E
Sbjct: 296  TVEYAKEYGLEVPTSERYSFENDEVLFEYICKEGLQKRLEYVP---KEQHQKYWDRLQHE 352

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +++I +MKF GY +IV DF++ AKK  IPVGPGRGS AGS+ AYA+ ITDIDPL+++LLF
Sbjct: 353  IDIIKKMKFPGYMIIVWDFVREAKKRGIPVGPGRGSAAGSLVAYAMGITDIDPLKYNLLF 412

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD DIDFCQ+RR E+I YV  KYG   VAQ+ITFG+L AK  +RDV R 
Sbjct: 413  ERFLNPERVSMPDIDIDFCQERRGEIIDYVVQKYGRYNVAQVITFGTLLAKGVIRDVARV 472

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L + Y+  DR+ KLIP+     +       +S+ +E   +DP  +R+   +  LEGL R+
Sbjct: 473  LGLSYNDGDRMAKLIPDKLGITLKEA-YEQESKIKELIESDPKFERVWRFALALEGLKRN 531

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            A  HAAG+VI +  L    P+Y+    +  VTQ+++ ++E   LIKFDFLGLKTLT++  
Sbjct: 532  AGMHAAGVVISNEELWHKTPLYKPSGEETIVTQYSLNFLEDVDLIKFDFLGLKTLTVIDN 591

Query: 585  SLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            ++  + +R   K+D + I  +D + Y L+ +  TLG+FQ+ES GM++    ++P   EDI
Sbjct: 592  AVKLVEKRYNTKIDWNRIDLNDKKVYDLIQSGHTLGLFQIESDGMQRLNARLKPTTFEDI 651

Query: 644  IALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIH-----PLIDPMLKETQGVIIYQEQVM 696
            IA+++LYRPGP+++ +   +  RK+G++++           +   L+ T G+I+YQEQVM
Sbjct: 652  IAVLALYRPGPMESGMLDDFIERKHGRKQVYYPFEEVSFDELKETLEPTYGMIVYQEQVM 711

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            QI Q + G+SL EAD++RRAMGKK ++ M++ K  F+  AS+ G     +  +FEL+ KF
Sbjct: 712  QIVQTIGGFSLGEADIIRRAMGKKKRDLMEEYKREFVKRASERGFDAKKSEILFELIEKF 771

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A YGFNKSH+AAYA+I++QTA++K +YP EF+AA +T E DN +KI K+  + ++  I++
Sbjct: 772  AGYGFNKSHSAAYAMITFQTAYLKAYYPQEFMAALLTSEQDNTDKIVKYVDEVKRLGIKL 831

Query: 817  MPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            +PP VN   ++F      G++ I + L AIKGVG +    I+EA  +  F  L DF  R+
Sbjct: 832  LPPDVNLSSLEFNATTIDGEDVILFGLGAIKGVGKSAVLSILEARNEGVFKDLNDFLQRI 891

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D  K+N++VLE+L+ +GA+D FGYSR  +L  ++ I   +  + + +     ++F   + 
Sbjct: 892  DPNKVNKKVLEALIKSGAMDSFGYSRRTMLLGIEKIVTASHEIARAKKMAENSLFGDAQE 951

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                K+ LE     +     E E+  LGFY SGHPLD ++  L K+      +       
Sbjct: 952  LIDIKVELEDLGEYDMKQILEFEKETLGFYVSGHPLDPFRSELEKIHYTLSSDLENIADS 1011

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +       V   + K + KG++ G V+  +     E   F
Sbjct: 1012 SEALFVGKVEEIKTKISNKGNKFGIVSIMDLHGNIEMMLF 1051


>gi|219684390|ref|ZP_03539334.1| DNA polymerase III subunit alpha [Borrelia garinii PBr]
 gi|219672379|gb|EED29432.1| DNA polymerase III subunit alpha [Borrelia garinii PBr]
          Length = 1161

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/1036 (38%), Positives = 612/1036 (59%), Gaps = 23/1036 (2%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A 
Sbjct: 14   GMSFKAKFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AGI+PIIG +  +         +           ++LL     GY+ L++L S  YL +
Sbjct: 74   KAGIKPIIGIEAYMAKTSKFFKKHDDLGKMS--YHLILLAKNEIGYKNLLKLTSISYL-E 130

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y
Sbjct: 131  GFYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQRH   D+     ++V+ +    +PL ATN+S +++ ED  A D+++ +      S 
Sbjct: 190  LELQRHGIKDQNIVNERLVEYSRELGVPLAATNDSHYVNREDAVAQDIIVCIGTGAKKSD 249

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300
            ++R ++ T + Y+K++ EM  +F+DLPEALENTV I  +   F +    PILP +     
Sbjct: 250  ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPIE 309

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             +        L    + GL+                 + R  +EL+VI RM F GYFLIV
Sbjct: 310  FN---TLGEYLEYLTLEGLK-------FRYRTLTSKIKDRAFYELSVIIRMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L KLIP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKLIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L++ +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGP--KVSLKEVLDDNSLKEYFTSKPVYKELMDAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+ +L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFKMLGEGKSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G + I   HP +  +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKSIKYPHPDLKEVLKPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EMD+ K  F+ GA + G  K +A  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMDEMKVDFLRGAIEKGYDKEVASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPQYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFKEFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AIK +G      I++    +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  AIKNLGEIVVDLIIDEREKNGKYISFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F   KG    +     + F   + S   E E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKKLGQNSLFDVLKGQNPIQQNFNYQAFKEYSYSELLEFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +         + +AT + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAINSFSSLNVLKDLATKKDSIVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|83952291|ref|ZP_00961023.1| DNA polymerase III subunit alpha [Roseovarius nubinhibens ISM]
 gi|83837297|gb|EAP76594.1| DNA polymerase III subunit alpha [Roseovarius nubinhibens ISM]
          Length = 1163

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 507/1057 (47%), Positives = 678/1057 (64%), Gaps = 50/1057 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL++H+ YSLLEGA+ L  +    A    PA+A+TD+NN+F+ALEFS  A  
Sbjct: 1    MSTAPRFIHLRLHTEYSLLEGAMRLKKLPGLCANMDMPAVAVTDSNNMFAALEFSVSAQG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+D    +              +  +VLL     GY+ L++L S +YL   
Sbjct: 61   AGVQPIMGCQVDFHYDE--------AAGDEAIAPLVLLAQNEAGYENLMKLNSCLYLRGD 112

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     + +  L E   EGLI LTGG  GP+ R      + VAE  +    K +  RLY+
Sbjct: 113  G-SLPHVIIEEL-ERHAEGLICLTGGPDGPVGRLLQAGRAPVAEALVARLAKAYPTRLYI 170

Query: 185  NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       +R  E   V++AY   LPLVATN+  F ++E +EAHD ++ VA   
Sbjct: 171  ELQRHPGENGQPEAERLTERGHVEMAYAMGLPLVATNDVYFPNKEMFEAHDAMLCVAEGA 230

Query: 239  VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q   R R+TP+HYLK   EM ++F+DLPEALENTVEIARRC+F             +
Sbjct: 231  YVDQSGPRRRLTPEHYLKTPQEMATLFADLPEALENTVEIARRCAFGCY--------RRD 282

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    +E  ELR  A AGL+ RLA   I      +DY++RLDFEL +I  M F GYF
Sbjct: 283  PILPKFADDEVAELRRMANAGLQARLA--VIPHAASVEDYQKRLDFELGIIEGMGFPGYF 340

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 341  LIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 400

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVIRYVQ+KYG +RV QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 401  FDIDFCMDRREEVIRYVQDKYGRDRVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 460

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS++  +A + R RE    +  V+RLL    K+EGL R+ASTHAAG+VIGD
Sbjct: 461  MIPVEGVKPVSIEQALAQEERLREEARREEVVERLLNYGMKVEGLLRNASTHAAGVVIGD 520

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA------ 590
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D +       
Sbjct: 521  RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAIDQIKGGGRHL 580

Query: 591  ------------QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                          G   D+  IP DD +TY L     T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 581  HQAADGATLYEPPEGAVDDIGQIPLDDAKTYELYARAKTVAVFQVESSGMMDALKRMKPT 640

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG ++  S+HPLID +L+ETQG+I+YQEQVMQI
Sbjct: 641  CIEDIVALVALYRPGPMENIPTYCEVKNGVKERESVHPLIDHILEETQGIIVYQEQVMQI 700

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKIKE MD ++ +F  GA++NG+ K  A  +F+LL KFA+
Sbjct: 701  AQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEKGAAENGVDKKKASEVFDLLEKFAN 760

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ ++   +  +
Sbjct: 761  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVKKGLGLDWL 820

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            PP VN     F V D  ++Y L A+K VG    R I +A  DKPF +L DF  RVD KK+
Sbjct: 821  PPCVNRSEARFIVRDGVLHYGLGALKNVGVDAMRLITQARGDKPFATLYDFARRVDLKKI 880

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             +R LE L  AGA D    +R ++  SL+ +  Y+  + + R +   ++F  E G    +
Sbjct: 881  GKRPLEMLARAGAFDELDRNRRRVFDSLEGLMNYSAAIHEQRNSNQVSLFG-EAGDDLPE 939

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--I 995
              +        + R   E R +GFY SGHPLD Y   L++  +K  +E     RG     
Sbjct: 940  PRIMPVEDWLPAERLTEEFRAVGFYLSGHPLDDYMAALKRKDVKTLDEVEMLARGGACIA 999

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +LA +V  +Q++K+ +G+R  +V  S+    YE   F
Sbjct: 1000 KLAGVVAGRQERKSARGNRFAFVQLSDTTGGYEVTMF 1036


>gi|310828648|ref|YP_003961005.1| DNA polymerase III DnaE [Eubacterium limosum KIST612]
 gi|308740382|gb|ADO38042.1| DNA polymerase III DnaE [Eubacterium limosum KIST612]
          Length = 1146

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1027 (36%), Positives = 593/1027 (57%), Gaps = 43/1027 (4%)

Query: 33   LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92
            + +    +  ++A+TD   LF A++F +     GI+P+IGC++ +  +   ++  +    
Sbjct: 1    MKEAKDLEMKSLALTDHGVLFGAVDFYKACLEEGIKPLIGCEVYVSPR---RLDQKEGNI 57

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  +VLL    +GY+ L+++VS  ++ D      R+   +L++   EG+I L+    
Sbjct: 58   DTNPYHLVLLAENNDGYKNLMKVVSEGFI-DGFYYKPRVDHEYLRK-HHEGIICLSACIG 115

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELP 210
            G I R       Q A +    ++ +FG    ++ +Q HR   +      ++  +  +++P
Sbjct: 116  GEIPRLIIEGQLQKANEICQMYQDIFGKGNFFLEIQDHRMQKEAQVNEVLIDFSKKYDIP 175

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPE 269
            LVATN+  ++ + D EAHD+L+ +  +  V  ++R R    + YLK+  EM  +F D+PE
Sbjct: 176  LVATNDVHYVRKADAEAHDILLCIQTAASVDDEERMRFPNNEFYLKSPDEMSRLFIDVPE 235

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            A+ENT +IA RC+    + +  LP F   E +         LR    AGL+         
Sbjct: 236  AIENTNKIAERCNVSFDLESAHLPEFELPEGEP---SAGGYLRKLCEAGLK-------AR 285

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                  + ++R+D+EL+VI  M F  YFL+V DFI++AK ++I VGPGRGS AGS+ AY 
Sbjct: 286  YQEITPEIKERMDYELDVIHSMGFDNYFLVVWDFIKYAKDHDIMVGPGRGSAAGSLVAYG 345

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L IT +DPL+++LLFERFLNP+R++MPD D DFC +RR EVI YV  KYG + VAQIITF
Sbjct: 346  LDITTLDPLKYNLLFERFLNPERITMPDIDCDFCYERRQEVIDYVIRKYGADHVAQIITF 405

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA-IADDSRFREARLADPSV 508
            G++ A+ A+RDVGRAL MPY+ VD++ K IP  P   ++++  + ++S  R+ +  DP V
Sbjct: 406  GTMAARGAVRDVGRALNMPYNAVDKVAKEIPMHPGQNITIERALEENSELRKMKENDPEV 465

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
             +LL++++ +EGL RHASTHAAG+VI D+PL + VP+YR+   D+  TQF M  +E  GL
Sbjct: 466  SKLLDMAESMEGLARHASTHAAGVVISDKPLMEYVPLYRN--GDMITTQFPMGLLEDLGL 523

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            IK DFLGL+TLT+++ +L+ +     + ++L  I  +D + Y +L+   TLG+FQLES G
Sbjct: 524  IKMDFLGLRTLTVIRDALENIKHSQGMNINLDNIDLEDPKVYKMLSKGDTLGVFQLESKG 583

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            M   +  +QP+  EDIIA +SLYRPGP+D I  Y   K   E I  +HP+++P+L  T G
Sbjct: 584  MIAFMRDLQPEHFEDIIAGISLYRPGPMDQIPRYIENKKSPEAITYLHPILEPILDVTYG 643

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK------------KIKEEMDKQKERFISG 735
             ++YQEQVMQI + ++G+++  +D++RRAM K             I  E+D+  E  I G
Sbjct: 644  CMVYQEQVMQIFRDVAGFTMGRSDLVRRAMSKKKIDVMNQEGEVFIHGEVDENGETVIDG 703

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A + G+ + +A  I+  +  FA Y FNKSHAAAYAVI+YQTAW+K +YP EF+AA M+  
Sbjct: 704  AVRRGVPENVAEQIYAEMKDFAKYAFNKSHAAAYAVIAYQTAWLKCYYPTEFMAALMSSV 763

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
            MD+ +K+ K+ +D R+ +I+++PP VN     F V +N+I + L AIKG+G      I+ 
Sbjct: 764  MDDEKKVSKYIEDCRKNDIKVLPPDVNVSYDKFSVKNNKICFGLGAIKGLGKNAIVSIVN 823

Query: 856  ASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
            A   D  F    DFC +VD K LN+R++E L+ +GA D  G +R QLL   + +    Q 
Sbjct: 824  ARETDGAFKGFRDFCEKVDLKALNKRMVEGLIKSGAFDYTGSTRAQLLLGAERMVDQVQR 883

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
             +++R     ++      +   +  L   +      R   E+ VLG Y +GHPL+ Y+  
Sbjct: 884  EKRDRLAGQISLLDFGGNSSLKEDFLPDVAPFTKEQRLALEKEVLGLYVTGHPLEKYENT 943

Query: 975  LRKMGIK------GYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            L++           YE+        G  + +  ++   + + TR G  + ++T  +    
Sbjct: 944  LKEKTNLNSSMLDSYEDLRDSGIRDGGAVIIGGLIDDVKNQITRNGKLMAFMTLEDLYGR 1003

Query: 1027 YEANFFP 1033
             E   FP
Sbjct: 1004 LEVVVFP 1010


>gi|261367002|ref|ZP_05979885.1| DNA polymerase III alpha subunit [Subdoligranulum variabile DSM
            15176]
 gi|282571120|gb|EFB76655.1| DNA polymerase III alpha subunit [Subdoligranulum variabile DSM
            15176]
          Length = 1150

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1023 (36%), Positives = 572/1023 (55%), Gaps = 40/1023 (3%)

Query: 32   ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKT 91
            + + + A  Q A AITD   ++  + F   A AAGI+PIIGC++ +  +      N+   
Sbjct: 1    MFEHLKAMGQTACAITDHGVMYGCVAFFDAAKAAGIKPIIGCEVYVATRTRFDKVNR--- 57

Query: 92   PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS 151
                   ++LL     GY+ LI++VS  +L +      RI    L++   EGLI L+   
Sbjct: 58   -IDGNSHLILLCKNEVGYRNLIKMVSAGFL-EGFYSKPRIDKDLLEQ-HHEGLICLSACL 114

Query: 152  SGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHEL 209
            +G I +A      + A++  L ++ LFG +  Y+ LQ H    D+    Q+++LA    +
Sbjct: 115  AGEIPKAILAGDYERAKQTALYYRDLFGAENYYIELQDHGLEEDQVVLPQLIRLARETGI 174

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLP 268
            P+VATN++ ++++ED +   +L+ +     ++  DR    T + YLK+  EM  +FS +P
Sbjct: 175  PMVATNDAHYITKEDSKMQSILLCIQTGKTIADADRMEFQTDEFYLKSADEMYELFSMVP 234

Query: 269  EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
            EA ENT +IA +C+F        LP F   +      E +         GLE R      
Sbjct: 235  EACENTNKIAEQCNFEFTFGETKLPYFRAPDGM----ENQAYFEKLCWEGLERRYP---- 286

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
              G      R+RL +E+ V+  M ++ Y+LIV DFI +AK  +IPVGPGRGSGAGS+ AY
Sbjct: 287  --GKVTDALRERLAYEIKVVKNMGYTNYYLIVYDFINYAKSRDIPVGPGRGSGAGSLAAY 344

Query: 389  ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
             + ITDIDP+R++L+FERFLNP+R+SMPDFD+DFC +RR EVI YV  KYG + VAQI+T
Sbjct: 345  CVGITDIDPIRYNLIFERFLNPERVSMPDFDVDFCYERRQEVIDYVNEKYGRDHVAQIVT 404

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
            FG++ A+AA+RDVGR + M Y  VD++ KLIP +    +  +A+      +    AD  V
Sbjct: 405  FGTMAARAAVRDVGRVMGMAYQDVDKVAKLIPMELKMTL-QKALDVSPDLKAMYEADAQV 463

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
              L++ S K+EG+ RHASTHAAG+VI   P ++ VP+  +    LPVTQFNM  IE+ GL
Sbjct: 464  RELIDTSLKVEGMPRHASTHAAGVVITREPATEYVPLSTN--DGLPVTQFNMVEIERLGL 521

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            +K DFLGL+TLT++  +   + ++  +  ++ I +DD +TY +L    T GIFQLES+GM
Sbjct: 522  LKMDFLGLRTLTVIHDTETAVRRKDPEFRMATISYDDPDTYAMLAKGETEGIFQLESTGM 581

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
             Q L  M+P  +EDIIAL+SLYRPGP+D+I  Y   +    KI    P +  +L  T G 
Sbjct: 582  TQVLVSMRPRNLEDIIALISLYRPGPMDSIPTYLRNRREPGKISYKTPQLAHILDVTNGC 641

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF----------ISGASK 738
            I+YQEQVMQI + L+G+S  +AD +RRAM KK  + M+ ++E F           +G  K
Sbjct: 642  IVYQEQVMQIFRELAGFSFGQADNIRRAMSKKKHKVMEAEREHFVHGCTEPGKECAGCVK 701

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NGI + +A  I++ +  FA Y FNKSHAA YA +++QTA++K HYP EF+AA +T  +DN
Sbjct: 702  NGIPEDVANEIYDEMISFASYAFNKSHAACYAYVAFQTAYLKCHYPHEFMAALLTSVLDN 761

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
              K+ ++  + ++  I+++ P +N     F    + I + L A+K VG      +++   
Sbjct: 762  TSKVIEYTTECQRLGIKVLQPDINVSRGGFTADGDCIRFGLNAVKSVGRNLIDAVVKERQ 821

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
            ++P+  L DFC R+   +LNRR LE+L+ +GA D    SR  +L+ ++ I K  +   + 
Sbjct: 822  NRPYRGLYDFCRRMYGNELNRRALENLIKSGAFDALEPSRRAMLECVEGILKSVETDMRQ 881

Query: 919  RTNKHENIFAHEKGTFSD----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
                  ++F    G   +       + K S   +S   + E+ V G Y SGHPLD Y+  
Sbjct: 882  NLEGQMDLFGMMSGESQETAINDYKVPKLSEYPTSDLLKMEKEVSGLYLSGHPLDAYREQ 941

Query: 975  LRKMGIKGYEESVATI----RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            + ++      +             + +   VV  +   T+  + + + T  +     E  
Sbjct: 942  IAQISTCTIAQLQGEEAKQFDNQTVTILCTVVKNKIMTTKSNTLMAFTTIEDLTGTMELL 1001

Query: 1031 FFP 1033
             FP
Sbjct: 1002 VFP 1004


>gi|325067134|ref|ZP_08125807.1| DNA polymerase III subunit alpha [Actinomyces oris K20]
 gi|326771682|ref|ZP_08230967.1| DNA polymerase III, alpha subunit [Actinomyces viscosus C505]
 gi|326637815|gb|EGE38716.1| DNA polymerase III, alpha subunit [Actinomyces viscosus C505]
          Length = 1197

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1081 (32%), Positives = 572/1081 (52%), Gaps = 56/1081 (5%)

Query: 1    LTQYLEKSP--SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
            ++   E +P   FVHL VH+ YS+L+GA  + + + +     QPA+AITD   +F A EF
Sbjct: 4    MSSQEEAAPKDDFVHLHVHTDYSMLDGAGKIKDYVAEAKRLGQPALAITDHGYMFGAYEF 63

Query: 59   SQKACAAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAE 107
               A AAGI+PIIG +  +               +    +   +   +   + LL    E
Sbjct: 64   YAAATAAGIKPIIGVEAYMTPGTSRFDKTRVFWGDESQRSDDVSARGSYTHMTLLSRNNE 123

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            G   L+ + S   L  Q  ++ RI    L    + GLI  TG  S  +           A
Sbjct: 124  GLHNLMRMDSFASLEGQWGKAPRIDRELLSRYAS-GLIGSTGCPSSEVQTRLRLGQWDEA 182

Query: 168  EKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
             +     + +FG +  YV L  H    ++     ++++A     PL+ATN+S ++  ED 
Sbjct: 183  LRVAGELQDIFGKEFFYVELMDHGLEIEQRVTKDLLRIAKEIGAPLLATNDSHYVRPEDR 242

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFI 284
               D ++ +   +V+S  DR +   D Y     +EM  +FS++P+A +NT+ +A +C   
Sbjct: 243  TIQDAMLCINSGSVLSDPDRFKFDGDTYYLRPGAEMRRLFSEMPQACDNTLLVAEQCDVH 302

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
             +        ++        + +E+    +   G++ R        G   +D R++ ++E
Sbjct: 303  FRTVD-EGASYMPAFPVPEGETDESWFIKECWRGMDRRF------NGDIPEDCRKQAEYE 355

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            ++VI +M F GYFL+VAD+I WAK + I VGPGRGSGAGS+ AYA+ IT+++PLR  L+F
Sbjct: 356  ISVITQMGFPGYFLVVADYINWAKAHGIRVGPGRGSGAGSMVAYAMGITELNPLRHGLIF 415

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DF + RRDEVI YV+ KYG +R++Q++T+G ++AK +L+D  R 
Sbjct: 416  ERFLNPERISMPDIDVDFDERRRDEVIEYVREKYGADRISQVVTYGVIKAKQSLKDSSRV 475

Query: 465  LQMPYSQVDRLCKLIPND-PAHPVSLQAIA--------DDSRFREARLADPSVDRLLEIS 515
            +  PY+  DRL K +P       +S++ I         +   FR+    DP   +++E++
Sbjct: 476  MGYPYAVGDRLTKAMPPSVQGKDISIKGIFNPADERYGEAEEFRKLHAEDPDAQKIVELA 535

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + LEG+ R    HA  +++    L+ ++PM + ++    +TQF+    E  GL+K DFLG
Sbjct: 536  KGLEGMTRQWGVHACAVIMSSATLTDIIPMMQRLQDGAVITQFDYPTCEHLGLLKMDFLG 595

Query: 576  LKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L+ LT++  +L+ +   G    D+  +  DD  TY LL+   TLG+FQL+  GMR  L  
Sbjct: 596  LRNLTVISDALENIVANGKPALDIDHVELDDRATYELLSRGETLGVFQLDGGGMRTLLRL 655

Query: 635  MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGV 688
            M+PD  EDI A+ +LYRPGP+  ++   Y  RKNG ++++ IHP     +DP+L  T G+
Sbjct: 656  MKPDNFEDISAVGALYRPGPMGAESHTNYALRKNGLQEVIPIHPELKEALDPILGTTHGL 715

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQVM+IA  L+G+S+ +AD LR+AMGKK  + + K    F +G  ++G SK     
Sbjct: 716  IVYQEQVMKIATDLAGFSMGKADALRKAMGKKKMDILAKMFVEFEAGMVQSGFSKESVKT 775

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            +++++  FA Y FNK+H+AAY V+SY TA++K HYP E++AA +T + DN +K+  +  +
Sbjct: 776  LWDVVVPFAKYAFNKAHSAAYGVVSYWTAYLKAHYPTEYMAALLTSQKDNKDKLAVYLGE 835

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLED 867
             R   I ++PP VN     F      + + L+A++ VG      I+ A  D   F S ED
Sbjct: 836  CRHMGITVLPPDVNASRAQFSAVGEDVRFGLSAVRNVGINVVDAIVAAREDKGEFTSFED 895

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F  +V +   N+R ++SL+ AGA D  G++R  L    ++       V++N      ++F
Sbjct: 896  FLDKVPAVVCNKRTIDSLIKAGAFDSLGHTRRSLQACHEDFVDEVIGVKRNEAAGQFDLF 955

Query: 928  AHEKGTFSDK------------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            A   G   D               +      +   +   E+ +LG Y S HPL   + +L
Sbjct: 956  ASLMGGSDDADDSPFGNGPVFSSDVPNLPEWDKKDKLAYERDMLGLYVSDHPLMGLEGLL 1015

Query: 976  RKMGIKGYEES---VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             K+  K   E         G  + +A ++ S  +K T++G+        + A   E  FF
Sbjct: 1016 GKLADKEISELHENDELPDGAMVTIAGLITSLTRKTTKQGNLWAIAQVEDLAGSIEVLFF 1075

Query: 1033 P 1033
            P
Sbjct: 1076 P 1076


>gi|300902003|ref|ZP_07120030.1| DNA polymerase III subunit alpha [Escherichia coli MS 84-1]
 gi|301305320|ref|ZP_07211416.1| DNA polymerase III subunit alpha [Escherichia coli MS 124-1]
 gi|300405889|gb|EFJ89427.1| DNA polymerase III subunit alpha [Escherichia coli MS 84-1]
 gi|300839425|gb|EFK67185.1| DNA polymerase III subunit alpha [Escherichia coli MS 124-1]
 gi|315254986|gb|EFU34954.1| DNA polymerase III subunit alpha [Escherichia coli MS 85-1]
          Length = 1144

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1032 (40%), Positives = 606/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57   ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230  MCELFVDIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V  D  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|315127143|ref|YP_004069146.1| DNA polymerase III subunit alpha [Pseudoalteromonas sp. SM9913]
 gi|315015657|gb|ADT68995.1| DNA polymerase III subunit alpha [Pseudoalteromonas sp. SM9913]
          Length = 1163

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 424/1054 (40%), Positives = 597/1054 (56%), Gaps = 43/1054 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P FVHL+VHS +S+++G      I+ K    + PA+AITD  N    + F   A  
Sbjct: 1    MA-APEFVHLRVHSDFSMVDGLAKTKPIVAKAQELEMPALAITDQMNFCGLVRFYGAAHN 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G    +          +          + LL     GY+ +  L+S+ Y    
Sbjct: 60   AGIKPIVGADFWV----------RSPEFPDEPSRLTLLAKDNIGYKNITLLISKAYQRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL ++  EGLI+L+G   G + +A    +  + E  +  +K+ F D  Y+
Sbjct: 110  VFHRPVIDREWLVDL-KEGLIILSGAKDGDLGKALIKGNPAIVESVVSFYKQHFSDHYYI 168

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R +R  +       V+LA   +LP+VATN  +FL  E++EAH++ +A+     +  K
Sbjct: 169  ELIRTNRAQEENYLHMAVELATNEQLPVVATNEVVFLKPENFEAHEIRVAIFDGYTLDDK 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP R + + YLK   +M  +FSD+PEAL+NTVEIA+RC+  +Q+       +   +   
Sbjct: 229  RRPKRFSQEQYLKTPEQMAELFSDIPEALQNTVEIAKRCNVTVQLGE-----YFLPDYPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
               + +  L   +  GLE RL      +    +   +Y +RL  EL+VI +M F GYFLI
Sbjct: 284  GSLKIDEFLVKVSQDGLEERLQFLFPDEQERQEKRGEYDERLKIELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDRRDEVIDHVSALYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + R +EA   D  V  L+++ + LEG  R+A  HA G+VI    +
Sbjct: 464  PGDPGMTL-AKAFDVEPRLQEAYDGDEEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +    +Y D     PVTQF+   +E AGL+KFDFLGL+TLT+LQ +LD   +R       
Sbjct: 523  TDFAALYCDDEGKFPVTQFDKNDVETAGLVKFDFLGLRTLTILQWALDMTNERLKREGKQ 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             VD++ IP DD ++  LL    T  +FQLES GM+  +  ++PDC ED+IALV+L+RPGP
Sbjct: 583  PVDINTIPLDDKKSIELLLRAETTAVFQLESRGMKDLVRRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVVYN-------NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V N         +         H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKLGREEISYPDAQYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSTFEEGARNNGIDGELAIKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT WMKTHYP EF+AA M+ +MDN +KI     +     + ++PP VN     
Sbjct: 763  AYALVSYQTLWMKTHYPAEFMAAVMSADMDNTDKIVTLVDECENMKLTLLPPDVNAGEYK 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V     I Y + AIKGVG      I+EA     PF  L DFC+RVD K+LN+RV E L
Sbjct: 823  FTVNLQGEIVYGIGAIKGVGEAPVDAILEARAKGGPFKDLFDFCARVDLKRLNKRVTEKL 882

Query: 886  VFAGALDCFGYS-----RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KIT 939
            ++AGALD  G       R  LL SL +  + A    K       ++F        + +  
Sbjct: 883  IYAGALDQLGPEKTQPGRATLLASLKDAMRAADQHNKAELLGQSDLFGLLATEPDEVEQA 942

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
              K +    +   + E+  LG Y +GHP++ Y+  L         +   T R      A 
Sbjct: 943  FIKATPLTDNQWLDGEKDTLGLYLTGHPINQYRRELGHYTSGRLIDLQPTNRDVVSTGAG 1002

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +V++ +    +KG+R G +T  + +   +   FP
Sbjct: 1003 LVIAARTLINKKGNRWGLITLDDKSARIDVRLFP 1036


>gi|300923024|ref|ZP_07139091.1| DNA polymerase III subunit alpha [Escherichia coli MS 182-1]
 gi|300420651|gb|EFK03962.1| DNA polymerase III subunit alpha [Escherichia coli MS 182-1]
          Length = 1144

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1032 (40%), Positives = 607/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57   ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V  D  I Y + AIK
Sbjct: 764  AEFMAAGMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|119487742|ref|ZP_01621251.1| DNA polymerase III subunit alpha [Lyngbya sp. PCC 8106]
 gi|119455575|gb|EAW36712.1| DNA polymerase III subunit alpha [Lyngbya sp. PCC 8106]
          Length = 1206

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1081 (35%), Positives = 596/1081 (55%), Gaps = 65/1081 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L +HS YSLL+GA  L  ++++    + PAIA+TD   ++ A+E  ++  + GI+P
Sbjct: 2    SFVGLHIHSDYSLLDGASQLPQLIERAVELKMPAIAVTDHGVMYGAIELIKQCRSKGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
            IIG ++ +   D  +   + K         V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62   IIGNEMYVINADVTQQQGRLKK-----YHQVVLAKNTKGYKNLVKLTTISHLQGFQGKGI 116

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L++   EGLI+ +    G + +A     S VA K    ++ +FG+  Y+ 
Sbjct: 117  FARPCINKELLKQYH-EGLIVTSACLGGELPQAILQGRSDVARKVAKWYQDVFGEDYYIE 175

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V++A   ++ ++ATN+S F+S  D EAHD L+ +    ++++  
Sbjct: 176  IQDHGSPEDRIVNVELVKIAREFDIKIIATNDSHFISCYDVEAHDALLCINTQKLITEDK 235

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECD- 301
            R R +   YLK+  EM  +F D    + +   +      S  ++ +  IL      +   
Sbjct: 236  RMRYSGTEYLKSAEEMAQLFRDHLPDDVIREAIANTIEVSEKIEPYTGILGESRIPDYPI 295

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAK--GYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                  +  L      GL  RL      +        YR+RL++EL ++ +M FS YFL+
Sbjct: 296  PPNHTSDTYLEEVTWKGLIERLQDQIKIQTRSEIPPVYRERLEYELKMMQKMGFSTYFLV 355

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D+I++A+ + IPVGPGRGS AGS+ AY+L IT+IDP+   LLFERFLNP+R SMPD D
Sbjct: 356  VWDYIKYARDHQIPVGPGRGSAAGSLVAYSLGITNIDPVHHGLLFERFLNPERKSMPDID 415

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
             DFC  RRDE+IRYV N+YG ++VAQIITF  + +KA L+DV R L +PYS+ D++ KLI
Sbjct: 416  TDFCIARRDEMIRYVTNQYGEDKVAQIITFNRMTSKAVLKDVARVLGIPYSKSDQMAKLI 475

Query: 480  PNDPAHPVSLQAI----ADDSRFREARLADP--------------SVDRLLEISQKLEGL 521
            P     P  L+ +         F+ A   +                V + ++++ ++EG 
Sbjct: 476  PVSRGKPAKLKVMISDDTPSPEFKSAYETEDVPIKNDLGNEVGTIPVRQWIDMAIRIEGT 535

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             +    HAAG+VI  +PL ++VP+ R+      +TQ+ M+ IE  GL+K DFLGLK LT+
Sbjct: 536  NKTFGVHAAGVVISKQPLDEIVPLQRN-NDGAVITQYFMEDIEALGLLKMDFLGLKNLTI 594

Query: 582  LQKSLDFLAQRGVKVDLSLIPFDD--------------------HETYHLLTTKGTLGIF 621
            +Q+ ++ + +      +      D                     +TY LL      G+F
Sbjct: 595  IQRVVELIEENHHFKMIPDQLPFDERKACQILAKGKIKKLPEDIQKTYKLLERGDLEGVF 654

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLID 679
            QLESSGMRQ +  ++P  IEDI ++++LYRPGP+D   I  + +RK+ +  I   HPL++
Sbjct: 655  QLESSGMRQIVRDLKPSNIEDISSILALYRPGPLDAGLIPKFIDRKHKRVPIEYEHPLLE 714

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
             +L+ET G+++YQEQ+M++AQ L+GYSL +AD+LRRAMGKK   EM KQ+E FI G++KN
Sbjct: 715  SILQETYGILVYQEQIMKMAQDLAGYSLGQADLLRRAMGKKKLSEMQKQREAFIDGSTKN 774

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G+SK IA ++F+ +  FA+Y FNKSH+ AY  ++YQTA++K +YPVE++AA +T   DN 
Sbjct: 775  GVSKQIAEHLFDQMLAFAEYCFNKSHSMAYGFVTYQTAYLKANYPVEYMAALLTENSDNT 834

Query: 800  EKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
            +K++K+    ++   I+++ P VN   VDF   D  I + L+AIK VG T   +I+ A  
Sbjct: 835  DKVQKYIDSCQRSLKIKVVSPDVNHSNVDFTPSDGEIIFGLSAIKNVGETAIENILAARK 894

Query: 859  D-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
            +   F  L DFCSRV    +N R LESL+  GALD    +R Q ++ L+ +  +AQ   K
Sbjct: 895  EGGKFSDLPDFCSRVSLHIVNSRALESLIKCGALDSLHQNRKQAIEYLNFLIPWAQGKAK 954

Query: 918  NRTNKHENIFAHEKG-----TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
            +R     +IF          T        K    ++  + + E+ +LGFY S HPL    
Sbjct: 955  DREIGQSSIFDLLGDTTTKSTNEGAPKPPKTDDFSTPEKLQFEKELLGFYVSEHPLQSVI 1014

Query: 973  PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                       ++     +G  +++  ++V  ++  T+KG  + ++   + + + EA  F
Sbjct: 1015 KAYPVEDAITLQDLAE-HKGKKVKVFLVIVEVKRHVTKKGETMAFLKVEDMSGQAEAIVF 1073

Query: 1033 P 1033
            P
Sbjct: 1074 P 1074


>gi|332095123|gb|EGJ00155.1| DNA polymerase III subunit alpha [Shigella boydii 5216-82]
          Length = 1144

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1032 (40%), Positives = 606/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L     GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57   ------QCDLLGDELTHLTVLAVNNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V  D  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL N  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGNALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|32472323|ref|NP_865317.1| DNA polymerase III alpha subunit [Rhodopirellula baltica SH 1]
 gi|32443559|emb|CAD73001.1| DNA polymerase III alpha subunit [Rhodopirellula baltica SH 1]
          Length = 1199

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1060 (33%), Positives = 558/1060 (52%), Gaps = 40/1060 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++  FVHL  HS YSLL+GA  +  ++ +       A+A+TD  NL  ALEF +KA  
Sbjct: 18   IPETKPFVHLHCHSHYSLLDGAGDIGKLVKRAVDHGMNALALTDHGNLHGALEFYRKAKD 77

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI PIIG +  I             +       + LL     G++ LI+L S   L + 
Sbjct: 78   AGINPIIGYEAYIAPGSRFDK-GGASSSKAASYHLTLLAQNRTGFKNLIKLASAASL-EG 135

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-----SSQVAEKRLLTFKKLFG 179
                 RI    L++   EG++ L+G  S    RA           + A+K    F K+FG
Sbjct: 136  FYFKPRIDKEILEKY-NEGIVCLSGCVSSEFSRAILKGIQTKEHEEEAKKIAGWFHKVFG 194

Query: 180  DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            DR ++ +  +     R +    V +A    LPLVAT++  ++++ED EA D+++ +    
Sbjct: 195  DRYFIEIMNNDVDIQRTQLEGAVDIANKMGLPLVATSDCHYVNQEDAEAQDIMLCINTGR 254

Query: 239  VVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
              +   R ++     +L++  +M   F  L +A+  + EIA      L+ +    P F  
Sbjct: 255  FRTDNTRMKMENDQFFLRSPQQMYEKFPGLEDAVGRSQEIADTVDIQLEFNKYFFPSFPC 314

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
             +    +    + LR     GL  R       I  G  + +   RLD EL+VI ++ +  
Sbjct: 315  PD----ELTPLDYLRKLCEQGLMERYEGDDERIIDGKLSDEVMARLDRELDVIEKLGYPT 370

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV DF+  A+   I     RGSG G++  YAL ++ + PLR+ LLFERFL+  R   
Sbjct: 371  YFLIVWDFVNHARDIGI-SATARGSGVGAIVCYALYMSHVCPLRYDLLFERFLDESRTEP 429

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD DIDF ++RR EVI YV+ +YG E V QI TFG+L AKAA++D GRAL +P S+V+++
Sbjct: 430  PDIDIDFEKERRIEVIDYVKERYGSEMVCQIGTFGTLAAKAAIKDTGRALGIPLSRVNQI 489

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             +L+P++    +  +++   +  +     DP +  LL+++ K+EGL R+  THAA +VI 
Sbjct: 490  TELVPDELKITI-AKSLEKSADLKMIYDGDPEIRELLDLAMKIEGLARNVGTHAAAVVIA 548

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594
            D+PL++ VP+ R       +TQ+ M  +E +GL+K DFLGL+ LT+L +++  + Q    
Sbjct: 549  DKPLTEYVPLGRVPGKQDVITQWAMVDVEASGLLKMDFLGLRNLTILSRTVKLVEQTTGT 608

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D    P DD  +Y LL    T G+FQLES G+R  L+ M+PD   DIIA  +LYRPGP
Sbjct: 609  TIDPLKFPLDDKPSYALLQRGETKGVFQLESGGIRDLLQRMKPDTFNDIIATAALYRPGP 668

Query: 655  ID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            ++   +  Y N K+G+++    HP++  +L+ET  +++YQEQVM+I   L    L++A  
Sbjct: 669  LEGGMVDDYVNIKHGRQQPEYKHPVLKEILEETNSIMVYQEQVMRILNRLGDVPLAKAYT 728

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
              +A+ KK +  +D   + FI+G+ KNG+++  A +I+ L+ KFA YGFNKSH+ AYA++
Sbjct: 729  CIKAISKKKQALIDANHDVFIAGSIKNGLAEKDAEDIWNLIVKFAGYGFNKSHSTAYALV 788

Query: 773  SYQTAWMKTHYPVEFLAASMTLE-----MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            +YQTA++K HYPVEF+AA ++ +         + + +  +D  + +I+++PP+VN    D
Sbjct: 789  AYQTAYLKAHYPVEFMAALLSSDISGRNFKRKDALVEHMEDCDRMDIEVLPPNVNQSDAD 848

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F V D +I ++L+AIK  G +TA  I E    + PF  + DFC RVD    NR  +E+L+
Sbjct: 849  FGVLDGKIPFALSAIKACGGSTAISIEEERKKNGPFKDIFDFCERVDPHDCNRSSIETLI 908

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--------AHEKGTFSDKI 938
             AGA DCFG  R QL   L+   +    V+ ++     + F        A   G  S  +
Sbjct: 909  KAGAFDCFGAKRSQLASVLERAMQAGAKVQADKKTGQASFFDAFDEEVDADSNGESSAAV 968

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
             L          +   E+ VLGFY   HPL  ++  L        E        + + + 
Sbjct: 969  PLPDIEEWPDREKLLAEKEVLGFYLDSHPLAEFENKLATFRTHTTESMADCKDRDEVIVG 1028

Query: 999  AMVVSKQQKKTRK---G--SRIGWVTFSEPAKEYEANFFP 1033
             M+ S +   T+    G  S+       + A       +P
Sbjct: 1029 GMISSIKIAHTKNPKPGAPSKYANFDLEDMAGSVRCICWP 1068


>gi|332097598|gb|EGJ02575.1| DNA polymerase III subunit alpha [Shigella dysenteriae 155-74]
          Length = 1144

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1032 (40%), Positives = 605/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L     GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57   ------QCDLLGDELTHLTVLAVNNTGYQNLTLLISKAYQRGYGPAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L   A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKSAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V  D  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL N  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGNALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|84514324|ref|ZP_01001688.1| DNA polymerase III subunit alpha [Loktanella vestfoldensis SKA53]
 gi|84511375|gb|EAQ07828.1| DNA polymerase III subunit alpha [Loktanella vestfoldensis SKA53]
          Length = 1188

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 499/1079 (46%), Positives = 675/1079 (62%), Gaps = 69/1079 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  SP F+HL+ H+ YSLLEGA+ + ++    A    PA+A+TDTNN+F ALEFS+ A  
Sbjct: 1    MTDSPRFIHLRTHTEYSLLEGAVPVKSLAPLAAGMGMPAVAVTDTNNMFCALEFSEYAVK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPIIGCQLD+         + GK P P  P IVLL     GY  L++L S  YL   
Sbjct: 61   AGVQPIIGCQLDLAY----ATPDPGKRPEPPAP-IVLLAQNEAGYLNLMKLNSCAYLDAA 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G +  ++ +  L + GT GLI LTGG  GPI R         A+  L     ++  RLYV
Sbjct: 116  G-ELPQVTVDELAQYGT-GLICLTGGPDGPIGRLLRHGQQAKADLLLDQLAAIYPQRLYV 173

Query: 185  NLQRH----RGYDRYRESQ--VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH       +  R S+   +++AY   LPLVATN+  F     YEAHD L+ +A   
Sbjct: 174  ELQRHPVDGGLPEAERLSERGHIEMAYAKGLPLVATNDVYFPKSAFYEAHDALICIADGA 233

Query: 239  V-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                Q+ R R+TP HY K+  EM ++F+DLPEALENT+EIA+RC+F     A        
Sbjct: 234  YVDQQEPRRRLTPQHYFKSPREMATLFADLPEALENTIEIAQRCAFKAYKRA-------- 285

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    +E  ELR +A  GL  RLA   I      +DY +RLDFEL +I  M F GYF
Sbjct: 286  PILPKFADDEVAELRRQAQEGLRARLA--VIPHAASIEDYEKRLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK N IPVGPGRGSGAGS+ AYAL ITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKDNGIPVGPGRGSGAGSLVAYALLITDLDPLRYSLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVIRYVQ+KYG +RV QIITFG+L +KAA+RDVGR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIRYVQDKYGRDRVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS++  +AD+ R RE    +  V RLL  +Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALADEPRLREEAKNEEVVQRLLTYAQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---- 592
            RPL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++  +++ + +     
Sbjct: 524  RPLDELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIHNAVELIRKAGRSL 583

Query: 593  --------------GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                          G + D+  IP DD ++Y L  +  T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  NVTADGDVLYQPPVGFEYDIGAIPLDDAKSYALYASAKTIAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG +++ SIHP ID +L ETQG+I+YQEQVM+I
Sbjct: 644  CIEDIVALVALYRPGPMENIPTYCEVKNGIKELESIHPSIDHILAETQGIIVYQEQVMEI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKI EEM K++ +F +GA  NG+    A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEAGAKANGVEPKKAREVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + Q+ ++   I  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLGVYFQEVKKGLGIDYI 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD------------------ 859
            PP VN     F+V D ++ Y+L A+K VG    + I+                       
Sbjct: 824  PPCVNRSGATFEVQDGKLVYALGALKNVGVEAMKLIVAGREGHPGLDPGPHSAGGPGSAS 883

Query: 860  ----KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
                KPF +L DF  R D K++ +R LE L  AGA D    +R +++ SLD +  Y+  +
Sbjct: 884  GATPKPFVNLFDFARRCDLKRIGKRSLEMLARAGAFDVLDRNRRRVMASLDALTAYSAAI 943

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
               +++   ++F         +  L        + R   E + +GFY SGHPLD Y   L
Sbjct: 944  HDQKSSNQVSLFGDAGEDL-PEPRLAFGDDWLPAERLAEEFKAIGFYLSGHPLDDYMGAL 1002

Query: 976  RKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++  +   +E +A        +++A  V  +Q++K+ +G+R  +V  S+P  +YE   F
Sbjct: 1003 KRKQVLTLDEVIARAEKGAALVKMAGTVSGRQERKSARGNRFAFVQLSDPTGQYEVTMF 1061


>gi|312966321|ref|ZP_07780547.1| DNA polymerase III subunit alpha [Escherichia coli 2362-75]
 gi|312289564|gb|EFR17458.1| DNA polymerase III subunit alpha [Escherichia coli 2362-75]
 gi|323190416|gb|EFZ75691.1| DNA polymerase III subunit alpha [Escherichia coli RN587/1]
          Length = 1144

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1032 (40%), Positives = 604/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57   ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320  EV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E     L      +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLVFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V  D  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG     A +VV+ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|329944570|ref|ZP_08292710.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 170
            str. F0386]
 gi|328530123|gb|EGF57006.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 170
            str. F0386]
          Length = 1197

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1070 (33%), Positives = 563/1070 (52%), Gaps = 54/1070 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YS+L+GA  + + + +     QPA+AITD   +F A EF   A A GI+P
Sbjct: 15   DFVHLHVHTDYSMLDGAGKVKDYVAEAKRLGQPALAITDHGYMFGAYEFYAAAKAVGIKP 74

Query: 70   IIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            IIG +  +               +        +   +   + LL    EG   L+ + S 
Sbjct: 75   IIGVEAYMTPGTSRFDKTRIFWGDESQRGDDVSARGSYTHMTLLSRNNEGLHNLMRMDSF 134

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L  Q  ++ RI    L   G  GLI  TG  S  +           A +     + +F
Sbjct: 135  ASLEGQWGKAPRIDRELLSRYG-GGLIGTTGCPSSEVQTRLRLGQWDEALRAAGELQDIF 193

Query: 179  G-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            G +  YV L  H    ++     +++LA     PL+ATN+S ++  ED    D ++ +  
Sbjct: 194  GKEFFYVELMDHGLEIEQRVTKDLLRLAQEIGAPLLATNDSHYVRPEDRTIQDAMLCINS 253

Query: 237  STVVSQKDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
             +V+S  DR R   D Y     +EM  +FS++P A +NT+ +A +C    +        F
Sbjct: 254  GSVLSDPDRFRFDGDTYYLRPGAEMRRLFSEMPHACDNTLLVAEQCDVHFRTVD-EGASF 312

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +        + +E+    +   G++ R        G   +D R++ ++E++VI +M F G
Sbjct: 313  MPAFPVPEGETDESWFIKECWRGMDRRF------NGDIPEDCRKQAEYEISVITQMGFPG 366

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+VAD+I WAK + I VGPGRGSGAGS+ AYA+ IT+++PLR  L+FERFLNP+R+SM
Sbjct: 367  YFLVVADYINWAKAHGIRVGPGRGSGAGSMVAYAMGITELNPLRHGLIFERFLNPERISM 426

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DF + RRDEVI YV+ KYG +R++Q++T+G ++AK +L+D  R +  PY+  DRL
Sbjct: 427  PDIDVDFDERRRDEVIEYVREKYGADRISQVVTYGVIKAKQSLKDSSRVMGYPYAVGDRL 486

Query: 476  CKLIPND-PAHPVSLQAIA--------DDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
             K +P       +S++ I         +   FR+    DP   +++++++ LEG+ R   
Sbjct: 487  TKAMPPSVQGKDISIKGIFNPDDERYGEAEEFRKLHAEDPDAQKIVDLAKGLEGMTRQWG 546

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HA  +++    L+ ++PM + ++    +TQF+    E  GL+K DFLGL+ LT++  +L
Sbjct: 547  VHACAVIMSSATLTDIIPMMQRLQDGAVITQFDYPTCEHLGLLKMDFLGLRNLTVISDAL 606

Query: 587  DFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            D +   G    D+  +  DD  TY LL+   TLG+FQL+  GMR  L  M+PD  EDI A
Sbjct: 607  DNIVANGKPALDIDHVELDDRGTYELLSRGETLGVFQLDGGGMRTLLRLMKPDNFEDISA 666

Query: 646  LVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQIA 699
            + +LYRPGP+  ++   Y  RKNG +++V IHP     ++P+L  T G+I+YQEQVM+IA
Sbjct: 667  VGALYRPGPMGAESHTNYALRKNGLQEVVPIHPELKEALEPILGTTHGLIVYQEQVMKIA 726

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
              L+G+S+ +AD LR+AMGKK  + + K    F +G  + G SK     +++++  FA Y
Sbjct: 727  TDLAGFSMGKADALRKAMGKKKMDILAKMFVEFEAGMVQAGFSKESVKTLWDVVVPFAKY 786

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNK+H+AAY V+SY TA++K HYP E++AA +T + DN +K+  +  + R   I ++PP
Sbjct: 787  AFNKAHSAAYGVVSYWTAYLKAHYPTEYMAALLTSQKDNKDKLAVYLGECRHMGITVLPP 846

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLN 878
             VN     F   D  + + L+A++ VG      I+ A      F S EDF  +V +   N
Sbjct: 847  DVNASRAQFSAVDEDVRFGLSAVRNVGINVVDAIVAARREKGEFTSFEDFLDKVPAVVCN 906

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK- 937
            +R ++SL+ AGA D  G++R  L    ++       V++N      ++FA   G    + 
Sbjct: 907  KRTIDSLIKAGAFDSLGHTRRSLQACHEDFVDEVIGVKRNEAAGQFDLFASLTGGSDGED 966

Query: 938  -----------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
                         +      +   +   E+ +LG Y S HPL   + +L K+  K   E 
Sbjct: 967  SSPFGNGPVFSSDVPNLPEWDKKDKLAYERDMLGLYVSDHPLMGLEGLLGKLADKEISEL 1026

Query: 987  ---VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    G  + +A ++ S  +K T++G+        + A   E  FFP
Sbjct: 1027 HENDELPDGAMVSIAGLITSLTRKTTKQGNLWAIAQIEDLAGSIEVLFFP 1076


>gi|159903240|ref|YP_001550584.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT
            9211]
 gi|159888416|gb|ABX08630.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT
            9211]
          Length = 1171

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1048 (36%), Positives = 591/1048 (56%), Gaps = 33/1048 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L  HS YSLL+GA  L  ++ +  A   PAIA+TD   ++ A+E  +   + GI+PI
Sbjct: 3    FVPLHNHSDYSLLDGASQLPAMVSRAKALGFPAIALTDHGVMYGAIELLKLCKSEGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ--- 127
            IG ++ +          +          +V+L     GY+ L++L +  +L     +   
Sbjct: 63   IGNEMYVVNGSIEDPQPK----KERRYHLVVLAKNDVGYRNLVKLTTISHLNGMRGRGIF 118

Query: 128  -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I    L+    EGLI+ T    G I +A   +   VA+     +KK+FGD  Y+ +
Sbjct: 119  SRACIDKQLLETY-KEGLIISTACLGGEIPQAILRDRIDVAKDVASWYKKVFGDDFYLEI 177

Query: 187  QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    DR   + + ++A    + L+ATN++ +L+++D EAHD L+ V    ++S++ R
Sbjct: 178  QDHGSVEDRIVNTGICRIAKELNIELIATNDAHYLTKDDVEAHDALLCVLTGKLISEEKR 237

Query: 246  PRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R T   YLK+  EM  +FSD      ++  +      S  ++ +  +    + +     
Sbjct: 238  LRYTGTEYLKSEEEMGKLFSDHIESNIIQEAINNTVTVSEKVEEYNILGTYKMPQFPVPD 297

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              +  + LR  +  GL  RL   ++    +   Y  RL+ E+ +I +M F  YFL+V D+
Sbjct: 298  GGQSTDYLRKVSQDGLMTRLKLESLEMIEN--KYINRLNSEIKIIEQMGFPDYFLVVWDY 355

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++A++N+IPVGPGRGS AGS+ AY+L IT+IDP+   LLFERFLNP+R SMPD D DFC
Sbjct: 356  IRFARENHIPVGPGRGSAAGSLVAYSLGITNIDPVTNGLLFERFLNPERKSMPDIDTDFC 415

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PYS  DRL KLIP   
Sbjct: 416  IERRGEVIDYVTKRYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYSDADRLAKLIPVVR 475

Query: 484  AHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
              P  L  +         FRE    DP V + L+++ ++EG  +    HAAG+VI   PL
Sbjct: 476  GKPAKLSQMIGDNTPSKDFREKYQNDPLVKKWLDMAIRIEGTNKTFGVHAAGVVIASDPL 535

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598
              LVP+ R+      +TQ+ M+ IE  GL+K DFLGLK LT+++K++  +    G K+DL
Sbjct: 536  DNLVPLQRN-NDGQIITQYFMEDIESLGLLKMDFLGLKNLTMIEKAVTLVEDSLGEKLDL 594

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN- 657
              +  DD +TY LL+     GIFQLES+GMRQ ++ ++P  +EDI ++++LYRPGP+D  
Sbjct: 595  DQLNMDDTKTYELLSKGDLEGIFQLESTGMRQIVKDLRPSSLEDISSILALYRPGPLDAG 654

Query: 658  -IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             I  + NRK+GKE+I   H  + P+L ET G+++YQEQ+M+IAQ L+GYSL +AD+LRRA
Sbjct: 655  LIPKFINRKHGKEQIDFPHASLAPILGETYGIMLYQEQIMKIAQELAGYSLGQADLLRRA 714

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK   EM+K +  F+ GASKNGI+  IA  +FE +  FA+Y FNKSH+ AY  +++QT
Sbjct: 715  MGKKKVAEMEKHRNFFLEGASKNGINSNIANELFEQMLLFAEYCFNKSHSTAYGAVTFQT 774

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K HYPV ++AA +T+   + +K++++  +     I++MPP VN+  +DF   +N I 
Sbjct: 775  AYLKAHYPVAYMAALLTVNAGSSDKVQRYISNCNSMGIEVMPPDVNSSGIDFTPNENHIL 834

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            + ++A+K +G    R ++++   D  F SL D C R+    LNRR LESL+ +GALD F 
Sbjct: 835  FGMSAVKNLGDGAIRELIKSREEDGSFISLADLCDRIPPNTLNRRGLESLIHSGALDSFD 894

Query: 896  Y--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--------ITLEKFSV 945
               +R QLL  LD I ++A    ++R +   N+F     +  ++              S 
Sbjct: 895  KKANRAQLLADLDLIIEWATSRARDRISGQGNLFDLASSSSENQTSNSLHTAPKAAPVSD 954

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             + + +   E+ ++GFY S HPL       + +              + + + AM+   +
Sbjct: 955  YSPTEKLRLEKELIGFYLSDHPLKQLSEPAKLIAPISLGTLEDQRDKSKVSVIAMINDMR 1014

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               TRKG ++  +   +     EA  FP
Sbjct: 1015 VVTTRKGDKMAILQIEDLTGSCEAVVFP 1042


>gi|83954740|ref|ZP_00963451.1| DNA polymerase III subunit alpha [Sulfitobacter sp. NAS-14.1]
 gi|83841024|gb|EAP80195.1| DNA polymerase III subunit alpha [Sulfitobacter sp. NAS-14.1]
          Length = 1177

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 497/1068 (46%), Positives = 679/1068 (63%), Gaps = 58/1068 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++P F+HL+ HS YSLLEGAL L  + D       PA+A+TDTNN+F+ALEFS     
Sbjct: 1    MAQAPRFIHLRTHSEYSLLEGALRLKKLPDLCKGADMPALALTDTNNMFAALEFSVAMAG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPIIGCQ+D+           G+ P    P +VLL  +  GY+ L++L S +Y+ D+
Sbjct: 61   AGVQPIIGCQVDLAY----VKVQPGEKPRDPAP-VVLLAQSEAGYENLMKLNSCLYI-DK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G    ++ L  L E    GLI LTGG+ GP+ +         AE  +      F DRLYV
Sbjct: 115  GGALPQVTLEEL-EALNGGLICLTGGAGGPVGQLLQGGQRPAAEALMARLHGAFADRLYV 173

Query: 185  NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G D      +  E   V++AY   +PLVATN+  F + + YEAHD L+ +A   
Sbjct: 174  ELQRHPGEDGQPVAEQLTERGFVEMAYDMGIPLVATNDVYFPNADMYEAHDALICIADGA 233

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q+  R R+T  HY K+++EMV++F+DLPEA+ENTVEIA+RC+F+            +
Sbjct: 234  YVDQQHERRRLTAQHYFKSQAEMVTLFADLPEAIENTVEIAKRCAFMAY--------RRD 285

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    +E  EL+ +A  GL+ RL    I      ++Y +RLDFEL +I  M F GYF
Sbjct: 286  PILPKFADDEIEELKRQAHEGLKNRLK--VIPHATTVEEYEKRLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK NNIPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKDNNIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIQYVQRKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS++  +AD+ R RE    +  V RLL   Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALADEPRLREEAKNEEVVARLLNYGQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D +   G  +
Sbjct: 524  RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDQIKSSGRHL 583

Query: 597  D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                               ++ IP DD  +Y L  +  T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  HVAADGTELFEPPEGLIDDIATIPLDDEASYKLYASAKTVAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI VY   KNG+ +  S+HP ID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPVYCEVKNGQRERESVHPSIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKI EEM K++ +F  GA  NG+ K  A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAMANGVDKKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ R +  +  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKRLELPWV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA----DKPFDSLEDFCSRVD 873
            PP VN     FKV +  + Y+L A+K VG    + I E       DKPF +L D   RVD
Sbjct: 824  PPCVNRSDATFKVVEGALVYALGALKNVGVEAMKLITEGRKVDGVDKPFATLFDLARRVD 883

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             K++ +R LE L  +GA D    +R ++ QSLD +  Y+  + + + +   ++F  E G 
Sbjct: 884  LKRVGKRPLEMLARSGAFDQLDNNRRRVWQSLDGLVSYSAAIHEQKASNQVSLFG-EAGD 942

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK------GYEESV 987
               +  +       ++ R   E + +GFY SGHPLD Y   +++            +E  
Sbjct: 943  DLPEPRIVPCDDWEAAERLTEEFKAVGFYLSGHPLDDYMGPMKRKSATGGVPFLTLDELT 1002

Query: 988  ATIRGN---NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +      N RLA +V  +Q++K+ +G+R  +   S+P   YE   F
Sbjct: 1003 EKVSVKGAMNARLAGIVAGRQERKSARGNRFAFAQLSDPTGAYEVTLF 1050


>gi|157165237|ref|YP_001467325.1| DNA polymerase III subunit alpha [Campylobacter concisus 13826]
 gi|112801857|gb|EAT99201.1| DNA polymerase III subunit alpha [Campylobacter concisus 13826]
          Length = 1203

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1064 (35%), Positives = 592/1064 (55%), Gaps = 47/1064 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++  F HL +H+ YSLL+GA  +  +   +      A AITD  N+F A++F +K   
Sbjct: 1    MSENSGFTHLHLHTEYSLLDGANKIEELAHTLHDRGDTAAAITDHGNMFGAIDFYKKMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+P+IG +  +   + L               ++L+     GY+ L+ L S  Y+ + 
Sbjct: 61   NGIKPLIGIEAYVHNGEQL-----DDKSTKQRFHLILIAKNETGYKNLMYLSSMSYI-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF---------FNSSQVAEKRLLTFK 175
                 RI    L+E  +EGL+  +    G +                  + A++  L +K
Sbjct: 115  FYYYPRINKKILKE-HSEGLVCSSACLQGEVSWHLNLSERNVKFGAKGYERAKEVALEYK 173

Query: 176  KLFGDRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            ++FGD  Y+ + RH   D+ R    ++++A    + ++ATN++ +  +E   AH+V M +
Sbjct: 174  EIFGDDFYLEIMRHGIGDQRRIDDDILRIAKETGIKVIATNDTHYTFKERAAAHEVFMCI 233

Query: 235  AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCS----------- 282
            A +  +   +R R +  + ++K++ +M  +F D+PE +ENT EI  +C+           
Sbjct: 234  AMNKTLDDPNRLRHSVHEFFVKSKEQMNELFLDIPEVIENTQEIVDKCNLEIKLGNPTPP 293

Query: 283  ---FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
               F L+          E E     K +     ++   GLE RL           ++YR+
Sbjct: 294  NFKFTLECAKERNLTLPEPENRYSFKNDAVFFEHECRKGLEERLK---FVPENLHEEYRK 350

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RL+ E+++I +M F GY +IV DFI  AK+  +PVGPGRGS AGS+ AY+L ITD+DP+ 
Sbjct: 351  RLEIEISIINKMNFPGYMMIVWDFINEAKRRGVPVGPGRGSAAGSLVAYSLKITDLDPIP 410

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            ++LLFERFLNP+R+SMPD D+DFCQ RR E+I YV  KYG   VA +ITFG L AK  +R
Sbjct: 411  YNLLFERFLNPERVSMPDIDVDFCQSRRGEIIDYVTQKYGKFNVAGVITFGKLLAKGVIR 470

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            DV R   MPY++ D + KLIP++    +   A   + +  E    +P   ++ + +  LE
Sbjct: 471  DVARVCDMPYAEADAMAKLIPDELNITLK-DAYDKEPKIAELISQNPKAAKIWKFALDLE 529

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPM--YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            GL R+A  HAAG+VI +  L    P+    +   D  VTQ+++K++E   LIKFDFLGLK
Sbjct: 530  GLNRNAGQHAAGVVISNEELWNKTPLFRQPNSPEDRFVTQYSLKYLEDVDLIKFDFLGLK 589

Query: 578  TLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            TLT++  ++  + QR   ++    +  +D   Y ++ +   +GIFQ+E  GMR+    ++
Sbjct: 590  TLTVIDNAIKLVKQRTGREIVWEQVDKNDSGVYKMIQSGQAIGIFQIEGEGMRKLGTSLR 649

Query: 637  PDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
            PDC EDI+A+++LYRPGP+++ +   +  RK+G+ +I      ++P+L  T GVI+YQEQ
Sbjct: 650  PDCFEDIVAMLALYRPGPMESGMLDDFVKRKHGEAEITYAFKELEPILAPTYGVIVYQEQ 709

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VMQI Q + G+SL  AD++RRAMGKKIKEEMD+ K  F+ GA   G++   A ++FEL+ 
Sbjct: 710  VMQIVQAIGGFSLGGADLVRRAMGKKIKEEMDRLKGEFVKGAEAKGLNGQKADDLFELIV 769

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
            KFA YGFNKSH+AAYA +++QTA++K +YP EF+AA +T E  NV+KI ++  + ++ NI
Sbjct: 770  KFAGYGFNKSHSAAYAYVTFQTAYLKAYYPAEFMAALLTSEESNVDKIVRYIDEIKRINI 829

Query: 815  QIMPPSVNTPCVDFKVGDN----RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFC 869
              +PPS+N    +F V  N     I + L AIKGVG     +I+    A   F S++DF 
Sbjct: 830  DTLPPSINKSTKEFSVVKNGEHDGIIFGLGAIKGVGGAAIENIIAERDAKGEFKSMDDFV 889

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            SR+D  K+N++V ESL+ AG  D FG+SR  LLQ+++NI +  +   + R N  E++F  
Sbjct: 890  SRIDPFKVNKKVFESLIKAGCFDEFGFSRKMLLQNVENIVEACKNAAQIRKNAAESLFGE 949

Query: 930  EKGTFSDKITLEKF-SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
            +      KI         +     + EQ  +G Y SGHPLD YK  + K+      E  +
Sbjct: 950  DDSMNDVKINFVTINDEFDIKQILKFEQESVGIYLSGHPLDDYKDEINKIKYTLSSEFES 1009

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +   I +   +     + T+ G ++G +   +     E   F
Sbjct: 1010 LPQSAEILVVGKIEDFSTRITKSGKKMGTINVLDFHGNIEIAVF 1053


>gi|331005660|ref|ZP_08329027.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC1989]
 gi|330420518|gb|EGG94817.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC1989]
          Length = 1241

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1107 (36%), Positives = 587/1107 (53%), Gaps = 86/1107 (7%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            ++     +  FVHL++H+ +SL++G + +  ++ K+A    PA+A++D  N +  ++F  
Sbjct: 1    MSDPTTNTNPFVHLRLHTEFSLVDGTVRIKPLVAKVAEMGMPAVAVSDVCNFYGLIKFYT 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  AG++PIIG    +        T+  K        I L      GY+ +I L+SR +
Sbjct: 61   AAQNAGVKPIIGADFWM-------RTSGDKENSDKPTLISLYAMNHVGYRNIILLISRAF 113

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
               Q      I   W+ E  +EG+I L+GG  G I  A   +    A   L  +K  F D
Sbjct: 114  QEGQYHGDPYILREWISEC-SEGVIALSGGRQGDIGVALLSDHRDEAMAYLEGWKADFPD 172

Query: 181  RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            R Y+ LQR     +       V LA   ++P+VATN+  FL   D+EAH+  + +     
Sbjct: 173  RFYLELQRTGRENEEDYLHAAVALASEQQIPVVATNDVRFLVGSDFEAHESRVCIGEGRT 232

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +    R  R +   YL+   EM  +FSD+P+AL NTVEIA+RC+  +++    LP F   
Sbjct: 233  LDDPRREHRYSDQQYLRTPEEMAELFSDIPQALANTVEIAKRCTVDIELGNYYLPDFPIP 292

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR-------------------- 338
            +        E       + G   +  +    +     +Y                     
Sbjct: 293  DNFRKDPFFEAHYPYATLEGFAQQAMEEKWEEKKETPEYLAMVETNVFFQKVSYEGLFER 352

Query: 339  --------------------QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
                                 RL FEL++I +M F GYFLIV DFIQWAK  +IPVGPGR
Sbjct: 353  LETILDKEDNDYKDKKQPYLDRLRFELDIIMQMGFPGYFLIVMDFIQWAKDQDIPVGPGR 412

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GSGAGS+ AYA  ITD+DPL + LLFERFLNP+R+SMPDFDIDFC D RD+VI+YV + Y
Sbjct: 413  GSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDNRDQVIKYVSDTY 472

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G + V+QIITFG++ AKA +RDV R     Y   D+L K+IP D    +      ++   
Sbjct: 473  GKDAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKLSKMIPMDVGITLQKAFDQEEP-L 531

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
            RE    D     + E+S KLEG+ R+   HA G+VI    L+   P++ D      VTQ+
Sbjct: 532  REFLDGDEEAQEIWEMSLKLEGITRNVGKHAGGVVIAPTKLTDFSPLFCDETGKGLVTQY 591

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL---------AQRGVKVDLSLIPFDDHETY 609
            +   +E AGL+KFDFLGL+TLT++  ++  +         A     +D++ IP DD  TY
Sbjct: 592  DKNDVESAGLVKFDFLGLRTLTIIDWAVKMINATRKKAAGANSHQVLDIAFIPLDDPATY 651

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YN 662
             +L T  T  +FQLES GM+  ++ +QPD IED+ ALV+L+RPGP+ + +V       + 
Sbjct: 652  RMLKTAETTAVFQLESRGMKDLIKRLQPDDIEDLTALVALFRPGPLQSGMVDDFINRKHG 711

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              +         H  + P+L  T GVI+YQEQVMQIAQ L+GY+L  AD+LRRAMGKK  
Sbjct: 712  RAEVAYPDAKYQHDKLKPILGPTYGVIVYQEQVMQIAQELAGYTLGGADMLRRAMGKKKP 771

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            EEM KQ+  F  GA   GI  T+A+ IF+L+ KFA YGFNKSH+AAYAV+SYQTAW+KTH
Sbjct: 772  EEMAKQRAVFEGGAKDQGIDPTLAIKIFDLVEKFAGYGFNKSHSAAYAVVSYQTAWLKTH 831

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAA 841
            YP +F+AA+M+ +MD  EK+  F ++ R   + ++PP VN     F V  DN I Y L A
Sbjct: 832  YPAQFMAATMSSDMDKTEKVVIFVEECRSMKLNLLPPDVNQGDFQFTVDIDNNIIYGLGA 891

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS---- 897
            IKG+G     +I+EA    PF +L DFCSRVD++K+N+R L++LV +G+ D  G      
Sbjct: 892  IKGLGEGPVENIIEARKSGPFKNLFDFCSRVDARKVNKRALDALVRSGSFDTIGPDGDNP 951

Query: 898  -------RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV----- 945
                   R  LL +L    K A     N+     ++F        D+      S      
Sbjct: 952  ERDLDMTRAILLAALPEAVKTADQALANQNAGMVDLFGDSLLGQGDENEDPYESFYRTRR 1011

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                 R   E   +G Y +GHP+D Y+  ++ +        VA      I++A +VV+ +
Sbjct: 1012 WTMKERLNGENDTIGLYLTGHPIDEYEDEVKHLVSSRISRIVA--DRKTIKIAGLVVAMR 1069

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              KT++G  +G++T  +     E   F
Sbjct: 1070 VMKTKRGDTMGFITLDDRTARMEVAVF 1096


>gi|77360939|ref|YP_340514.1| DNA polymerase III subunit alpha [Pseudoalteromonas haloplanktis
            TAC125]
 gi|76875850|emb|CAI87071.1| DNA polymerase III, alpha subunit; the entire polymerase contains 10
            subunits [Pseudoalteromonas haloplanktis TAC125]
          Length = 1163

 Score =  760 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1050 (40%), Positives = 596/1050 (56%), Gaps = 43/1050 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P FVHL+VHS +S+++G      I+ K    Q PAIAITD  NL   + F + A +
Sbjct: 1    MA-APDFVHLRVHSDFSMVDGLAKTKPIVAKAQELQMPAIAITDQMNLCGLVRFYETAHS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI+G    +          +          I +L    +GY+ L  L+S+ Y    
Sbjct: 60   TGIKPIVGADFWL----------RSPEFENEPSRITILAKDNQGYKNLTLLISKAYQRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E+   GLI+L+G   G + +A   N+  V E  +  +K+ F D  Y+
Sbjct: 110  VFHRPVIDRDWLIELKA-GLIILSGAKDGDLGKALLKNNPSVIESVVSFYKQHFSDNYYL 168

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R +R  +       V+LA   +LP+VATN  +FL  E++EAH++ +A+     +  K
Sbjct: 169  ELVRTNRPLEEDYLHMAVELAAKEQLPVVATNEVVFLKPENFEAHEIRVAIFDGYTLDDK 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP R + + YLK   +M  +FSD+PEAL+NTVEIA+RC+  +Q+       +   +   
Sbjct: 229  RRPKRFSEEQYLKTPEQMAELFSDIPEALQNTVEIAKRCNVTVQLGT-----YFLPDYPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
               + E+ L   +  GLE RL      +    +   +Y +RLD EL VI  M F GYFLI
Sbjct: 284  GSLKIEDFLVKVSQDGLEERLQFLFPDEQERKEKRVEYDERLDIELGVINEMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERISMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ K+I
Sbjct: 404  VDFCMDRRDEVIDHVSALYGRNAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + R +EA   D  V  L+++ + LEG  R+A  HA G+VI    +
Sbjct: 464  PGDPGMTL-AKAFDIEPRLQEAYDGDNEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +    +Y D     PVTQF+   +E AGL+KFDFLGL+TLT+LQ +LD   +R       
Sbjct: 523  TDFAALYCDDEGKFPVTQFDKNDVETAGLVKFDFLGLRTLTILQWALDMTNERLARTGKE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             VD++ IP DD ++  LL    T  +FQLES GM+  +  ++PD  ED+IALV+L+RPGP
Sbjct: 583  PVDINTIPLDDKKSIELLLRAETTAVFQLESRGMKDLVRRLKPDSFEDMIALVALFRPGP 642

Query: 655  IDNIVVYN-------NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V N         +         H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKLGREEISYPDAQYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSTFEDGARNNGIDGELAIKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT WMKTH+P EF+AA M+ +MDN +KI     +     + ++PP VN     
Sbjct: 763  AYALVSYQTLWMKTHHPAEFMAAVMSADMDNTDKIVILVDECENMKLTLLPPDVNAGEFK 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V     I Y + AIKGVG      I+EA     PF  L DFC+RVD K+LN+RV E L
Sbjct: 823  FTVNLQGEIVYGIGAIKGVGEAPVEAILEARAKGGPFKDLFDFCARVDLKRLNKRVTEKL 882

Query: 886  VFAGALDCFGYS-----RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KIT 939
            +++GALD  G       R  LL SL +  + A    K       ++F        + +  
Sbjct: 883  IYSGALDQLGPEKTQSGRATLLASLKSAMRAADQHNKAELLGQSDLFGLLATEPDEVEQA 942

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
              K +    +   + E+  LG Y +GHP++ Y+  L+        +   T R      A 
Sbjct: 943  FIKATGLTDNEWLDGEKETLGLYLTGHPINQYRRELKYYTSGKLVDLQPTNRDVVSTAAG 1002

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            +V+S +    +KG+R   +T  + +   + 
Sbjct: 1003 LVISARVLINKKGNRWALITLDDKSARIDV 1032


>gi|253999458|ref|YP_003051521.1| DNA polymerase III subunit alpha [Methylovorus sp. SIP3-4]
 gi|253986137|gb|ACT50994.1| DNA polymerase III, alpha subunit [Methylovorus sp. SIP3-4]
          Length = 1149

 Score =  760 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1037 (40%), Positives = 620/1037 (59%), Gaps = 34/1037 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P+F+HL+ HS YS+++G + + + +   AAD+ PA+A+TD +NLF A++F + A   G
Sbjct: 2    SQPTFIHLRCHSEYSVVDGTVRIGDYVKAAAADRMPALALTDLSNLFGAVKFYKSARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++P++GC L ++ + N                ++LL  T  GY +L EL+SR YL +Q +
Sbjct: 62   LKPVLGCDLWLENETNRDQP----------YRLLLLCQTHAGYLKLCELLSRAYLENQHR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E G EGLIML+G  +G + +A    + Q A      +  LF +R Y+ L
Sbjct: 112  GRAEIKRQWLVEAGGEGLIMLSGAMAGDVGQAILQGNQQAALALAQQWAALFPNRFYIEL 171

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR       +  S+ + LA   +LP+VAT+   F+  +D++AH+  + +A   V++   R
Sbjct: 172  QRAGHAQQEFYISRALALAGDLDLPVVATHPVQFMQADDFKAHEARVCIAEGYVLADNRR 231

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  TP+ + K ++EM ++F+D+P+AL N+VEIA+RC+  L +    LP+F     + + 
Sbjct: 232  PKHFTPEQFFKTQAEMAALFADVPQALANSVEIAKRCNLTLTLGKNYLPQFPTPNGESL- 290

Query: 305  KEEENELR---NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               +  L       +      L      +      Y  RL+FE N+I +M F GYFLIVA
Sbjct: 291  ---DEYLVVQAKLGLEKRLQVLYPDEAVRDAKRPVYLTRLEFETNIIIQMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N +PVGPGRGSGAGSV AY+L ITD+DPL+++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKNNGVPVGPGRGSGAGSVVAYSLGITDLDPLQYALLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ+ RD VI YV++KYG   V+QI TFG++ AKA +RDVGR L +P++ VD + KLIPN
Sbjct: 408  FCQEGRDRVIDYVKHKYGLASVSQIATFGTMAAKAVIRDVGRVLDLPFNFVDGIAKLIPN 467

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +S   +  + + +E R  +  V+ LLE++ +LEGL R+   HA G++I    +S 
Sbjct: 468  ELGITLSDA-LEKEPQLKERREQEEEVNELLELALRLEGLTRNIGMHAGGVLISPGKISD 526

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVKV 596
              P+Y     +  V+Q++   +E  GL+KFDFLGL+TLT+L  +L+        +    +
Sbjct: 527  FSPIYCQQNGESLVSQYDKDDVEAVGLVKFDFLGLRTLTILAMALENANAQRALKELPPL 586

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D   +P +D  TY LL +  T  +FQLES GM+  L+  +PDC EDIIALV+LYRPGP+D
Sbjct: 587  DFETLPINDKPTYQLLKSANTTAVFQLESRGMKDMLKQAKPDCFEDIIALVALYRPGPMD 646

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             I  +  RK+G++++   HP  +P+LKET G+++YQEQVMQIAQ+++GYSL  AD+LRRA
Sbjct: 647  LIPDFCRRKHGQQRVEYPHPATEPILKETYGIMVYQEQVMQIAQVVAGYSLGGADLLRRA 706

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK KEEMD Q+  F+ GA KNG  +  A  +F+L+ KFA YGFNKSHAAAYA+++Y T
Sbjct: 707  MGKKKKEEMDAQRAVFVEGAVKNGTPEKQAAELFDLMEKFASYGFNKSHAAAYALVAYHT 766

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRI 835
            A++K HYP  FLAA+M+ +M+N + +  F  D     ++++ P +N     FK + D ++
Sbjct: 767  AYLKAHYPAAFLAATMSADMNNTDSVHIFYDDCAANGVEVLAPDINQSEFRFKPISDKQV 826

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y L A+KG G      I+ A  A+ PF  L DFC R+D +K+NRRV+ESL+ AGA D  
Sbjct: 827  LYGLGAVKGTGWAAIEVILAAREAEGPFKDLFDFCRRLDLRKVNRRVIESLIRAGAFDKL 886

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +R  LL  +      A+  +    +   ++F     + +   TL K +  +   + + 
Sbjct: 887  EPNRAALLAGVSLAISAAE--QSGAASGQNSLFGEMSDSVAH--TLPKVNAWSEQEKLQQ 942

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  LGFYFSGHP + YK  L               +     LA +V+  + + T++G  
Sbjct: 943  EKSALGFYFSGHPYEGYKRELATFVRTTLGNLK--PQDQPQLLAGVVMGIRIRMTQRGK- 999

Query: 1015 IGWVTFSEPAKEYEANF 1031
            +  VT  +     E   
Sbjct: 1000 MAIVTLDDATSRIEIVV 1016


>gi|255994597|ref|ZP_05427732.1| DNA polymerase III, subunit alpha [Eubacterium saphenum ATCC 49989]
 gi|255993310|gb|EEU03399.1| DNA polymerase III, subunit alpha [Eubacterium saphenum ATCC 49989]
          Length = 1182

 Score =  760 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1077 (34%), Positives = 577/1077 (53%), Gaps = 77/1077 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VHS YSLL+GA  + +++ + A     ++A+TD   +F  +EF ++    GI+P
Sbjct: 2    SFTHLHVHSEYSLLDGAARIRDLVAEAARFGMKSLALTDHGTMFGVVEFYKECKKQGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ +                 +   ++LLV   EGY+ LI+LVS     +      
Sbjct: 62   IIGCEVYVARGSIEVQEK-------SPNHLILLVKNEEGYKNLIKLVSIAN-KEGFYYKP 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
            RI    L E  ++GLI L+   +G I       + + A+K  + ++ ++G+   Y+ +Q 
Sbjct: 114  RID-ENLMERFSKGLIALSACPAGRIPELILEGNYEEAKKTAIKYRDIYGEGNFYLEIQN 172

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    ++    ++ +++    + LVATN+S ++ +ED + HDVL+ +     +S + R +
Sbjct: 173  HGLDKEQIINRELTKMSEETGIKLVATNDSHYVKKEDAKMHDVLLCIKTGARLSDEVRMK 232

Query: 248  VTPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               D +     + + + F    +A+ENT+E+A +C+F    ++  LP F   E +     
Sbjct: 233  FPSDDFYLKSEDEMRMLFPGQTKAIENTLEVAEKCNFDFDFNSQHLPDFEVPEGE----T 288

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +E  LR     GLE R             + R+RL+FEL+ I  M +  YFLIV DFI +
Sbjct: 289  KEGYLRKLCCEGLEKRHKN-------VTNELRERLEFELDTIHNMGYDEYFLIVHDFIHY 341

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK   IPVGPGRGS AGS+ +Y L IT +DP++++LLFERFLNP+R+SMPD DIDFC+DR
Sbjct: 342  AKTRGIPVGPGRGSAAGSLVSYCLDITCVDPIKYNLLFERFLNPERVSMPDIDIDFCKDR 401

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV +KYG +RVAQI+TFG+L+AKAA+RDVGR +   Y +VDRL K +P      
Sbjct: 402  RQEVIDYVIDKYGDDRVAQIVTFGTLKAKAAIRDVGRIMNAGYGEVDRLAKAVPPGLGVT 461

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +S      DS F+E          +++++ +LEG+ R+A THAAG+VI    +   VP+Y
Sbjct: 462  LSDAL--KDSNFKELYEEGEDSKEVVDMALQLEGMVRNAGTHAAGVVISKESIDSYVPIY 519

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDD 605
            +  +         M  IE+ GL+K DFLGLK LT+++   +      G+K++     +DD
Sbjct: 520  KSDKGFCTQMT--MTTIEELGLLKMDFLGLKNLTVIENCKNMVYRNHGIKINFDDSNYDD 577

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             + Y L+++  T GIFQLES GM + ++ ++PD IEDIIA +SLYRPGP+D+   Y   K
Sbjct: 578  SKVYELISSGNTEGIFQLESEGMTEFMKDLKPDSIEDIIAGISLYRPGPMDSKDNYIFNK 637

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
               ++I   HP + P+L  T G ++YQEQVMQI + L+GYS   AD++RRAM KK  +EM
Sbjct: 638  RHPDRIKYKHPALKPILSLTYGCLVYQEQVMQIVRELAGYSYGRADLVRRAMSKKKADEM 697

Query: 726  DKQKERF------------------------------ISGASKNGISKTIAVNIFELLAK 755
             K++E F                              + G  K GI K +   IF+ +  
Sbjct: 698  AKEREIFLFGTENEYWAEENEKSCKISDAPVTDDEEVVEGCVKRGIPKEVGNEIFDEMES 757

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSHAAAYAVISYQTA++K HYPVEF+A+ +     N  K+ ++ ++AR  NI+
Sbjct: 758  FASYAFNKSHAAAYAVISYQTAYLKAHYPVEFMASLLASASGNDGKMARYIKNARDMNIE 817

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS--ADKPFDSLEDFCSRVD 873
            I+PP VN   V F+   N I + LA +K VG   A HI++      K +D++  F   +D
Sbjct: 818  ILPPDVNKSGVTFEARGNEILFGLADVKNVGDNAADHIVKVRESKGKAYDNMYTFVQDMD 877

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
              K+N+ VLE+L+ AGA   F  +    L   ++  +  +   K  T    ++F   +  
Sbjct: 878  ISKVNKSVLENLIRAGAFRDFEGTMAANLSIYNDALEQKKKSNKGITADQMSLFEEGEIE 937

Query: 934  FSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM------GIKG---- 982
                   +        + + + E+  LG Y + HP+  Y+  L          I      
Sbjct: 938  GEQFSQKIPNIPEFKDAQKMKFEKEALGMYLTTHPMKEYEQYLEGRITDVLGNINPEADS 997

Query: 983  ------YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    +S A   G  ++LA ++ + +   T+KG  + +    +     E   FP
Sbjct: 998  DDEEDVASKSSAYREGQRVKLAGLITTVKTIVTKKGEMMAFANLEDMTGRMEMVIFP 1054


>gi|169334376|ref|ZP_02861569.1| hypothetical protein ANASTE_00775 [Anaerofustis stercorihominis DSM
            17244]
 gi|169259093|gb|EDS73059.1| hypothetical protein ANASTE_00775 [Anaerofustis stercorihominis DSM
            17244]
          Length = 1215

 Score =  760 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/1074 (33%), Positives = 581/1074 (54%), Gaps = 71/1074 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G   +  +   +      +IAITD  N+F  +EF +     GI+P+
Sbjct: 5    FTHLHVHTEYSLLDGFCKIKELPKLVKDMGMDSIAITDHGNMFGVIEFYRACRKEGIKPV 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC++ + M D                  +L      GY+ L+++VS  Y  +      R
Sbjct: 65   LGCEIYMTMGDRKGRDPMNDK---QSFHFILFAENEIGYKNLMKVVSIAYT-EGFYYKPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 L++  +EG+I  +    G I R       + A+K L  F  ++G D  ++ +Q H
Sbjct: 121  ADFDLLEKY-SEGIIATSACIGGIIPRKINSGEIEEAKKYLERFINIYGKDNFFLEIQDH 179

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +      +++++A  + + L+ATN+S +L + D EAHDVL+ V  ++ +S ++R R 
Sbjct: 180  GLEEEKTANEELIKMAKEYGVGLIATNDSHYLRKSDSEAHDVLLCVQTASNLSDENRMRF 239

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + Y+K   EM  +F   PEA+ENT +IA RC+  ++     LP F   E        
Sbjct: 240  PNDEFYIKTPEEMSDLFKYCPEAIENTHKIAERCNVEIEFGHYHLPVFPLPEGM----TS 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L+   + GL               ++  +RL++EL VI  M F+ YFLIV DFI ++
Sbjct: 296  QQYLKKLCMDGLYK-------KYDNVTKELTERLEYELGVINDMGFNDYFLIVWDFINYS 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            + ++IPVGPGRGS AGS+ +Y L IT IDP++++L+FERFLN +R+SMPD DIDFC ++R
Sbjct: 349  RTHDIPVGPGRGSAAGSIVSYTLDITQIDPIKYALIFERFLNNERVSMPDIDIDFCYEKR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             E I YV  KYG + V+QI+TFG+L+ KAA++D+ R++ + + Q +++ KLIP++    +
Sbjct: 409  HEAIEYVIEKYGFDNVSQIVTFGTLKPKAAVKDIARSMGISFDQSNKIAKLIPDEAKITI 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +AIA +    +    DP++ +LL+ ++ +EG+ RH+STHAAG++I DR +S  VP+Y 
Sbjct: 469  E-KAIAMNPELHQMYDEDPTIKKLLDTAKAVEGMPRHSSTHAAGVIISDRAVSDYVPLYL 527

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
            +   D    QFNM  +E+ GL+K DFLGLK LT+++ +LD +   +G+ VD+  I   D 
Sbjct: 528  N--KDSIAAQFNMTTVEELGLLKMDFLGLKNLTVIKHTLDNIKLSKGIDVDIDNISLTDQ 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              +  ++   T+G+FQL S GM+  ++ ++P+  EDIIA +SLYRPGP+D I  Y + K+
Sbjct: 586  NVFDTISRGDTIGVFQLASPGMQSFMQRLKPNTFEDIIAGISLYRPGPMDMIPTYIDNKH 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                I  +HP ++P+L  T G+IIYQEQVMQI + L+GYS+  +D++RRAMGKK  E + 
Sbjct: 646  NPANISYLHPSLEPILNVTYGIIIYQEQVMQIVRDLAGYSMGRSDLIRRAMGKKKHEVIA 705

Query: 727  KQKERF----------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            K++E F                + G    GI +     I++L+ KFA YGFNKSHAAAY 
Sbjct: 706  KEREIFLHGNEEAFNKGEDKEKVHGCVAIGIDEKTGNEIYDLMEKFASYGFNKSHAAAYG 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            VISYQTA++KT+YP EF+AA +T      +    +    ++  I+++PP VN     F V
Sbjct: 766  VISYQTAYLKTYYPAEFMAALIT-VYIGSDDRMLYMNHLKEKGIKLLPPDVNKSYSRFTV 824

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +  + + L A+KG+G +    I++A  +   F S  DF ++++   LN++ +ESL+ +G
Sbjct: 825  DNGSVRFGLLALKGLGESAIEEIIQAREEKGDFTSFPDFVNKIEFNSLNKKGVESLILSG 884

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVEN 947
            A D  G +R +L    ++         K        +     ++     ++T+   +   
Sbjct: 885  AFDSLGNNRRELYCVYEDFLNDTLRQRKQNIAGQTTLLEMLSQEENEQIEMTIPTMAEFE 944

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN------------- 994
            +  + + E+ V+G Y SGHPL  ++  L K       E        N             
Sbjct: 945  TKEKLKFEKEVMGMYISGHPLAEHEEDLNKYTSMQLYEVYDRYGNKNSEEEEEAEPQPPV 1004

Query: 995  --------------IRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
                          I +  +V   +   T+K   ++ ++T  +   + E   FP
Sbjct: 1005 NNKYNKFNKNKRELITIGGLVTYVKVIYTKKDNKQMAFMTVEDLTSDMEIVVFP 1058


>gi|296106547|ref|YP_003618247.1| DNA polymerase III subunit alpha [Legionella pneumophila 2300/99
            Alcoy]
 gi|295648448|gb|ADG24295.1| DNA polymerase III subunit alpha [Legionella pneumophila 2300/99
            Alcoy]
          Length = 1148

 Score =  760 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1039 (41%), Positives = 624/1039 (60%), Gaps = 35/1039 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VH+ +SL++G + +  ++  + A     +A+TD  NLF+A++  + A  AGI+P
Sbjct: 4    RFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  L                    + S+VLL     GY+ L  LVS+ Y   Q     
Sbjct: 64   IIGSDL----------PCHDLETPDNIFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHGQP 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+ L W+ E  ++GLI L+GG  G I +A   N   +A KR L +  LF +R Y+ +QR 
Sbjct: 114  RVQLQWIPEF-SQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQRT 172

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
               D  +   ++V LA   +LPLVATN+  F++E+D++AH+  + +     ++   R  +
Sbjct: 173  GRADELHYNEKLVALADELQLPLVATNDVRFINEDDFDAHEARVCIHEGYTLADPRRVQQ 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YL++  EM  +FSDLP AL+NTVEI++RC+  L +    LP F   +        
Sbjct: 233  YSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLDLGHNYLPNFPIPDG----TTV 288

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYH-----AQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            E  L + +  GLE RL Q    K          +Y +RL  EL+VI  M F+GYFLIVAD
Sbjct: 289  EAYLSHLSEVGLEERLKQLFRDKSEGELLAARGEYDKRLKIELDVINNMGFAGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD VI YV  KYG + V+QIITFG++ AKA +RDVGR L  PY  VD+L KLIP +
Sbjct: 409  CMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +S +A+  +   R     +  V  L +++ KLEG+ R+A  HA G+VI    L+  
Sbjct: 469  LGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAPSQLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
              +Y +  S   V+QF+   +E  GL+KFDFLGL+TLT++  +L  + ++        +D
Sbjct: 528  TAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENAGLSPID 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +S IP  D  T+ LL    T  +FQLES GM++ +  +QPDC EDIIALV+L+RPGP+ +
Sbjct: 588  ISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFRPGPLQS 647

Query: 658  IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +   + +RK+G+ ++   HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L  AD+LRR
Sbjct: 648  GMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRR 707

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM KQ+E F  GA   G+ + +A +IF+L+ KFA YGFNKSH+AAYA+++YQ
Sbjct: 708  AMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAYALVAYQ 767

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K HYP  F+AA M+ +MDN +K+  F  +     +Q++PPS+N     F V D + 
Sbjct: 768  TAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFTVSDEKT 827

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y L AIKGVG +    I++    + PF  L  FC R+D +K+NRRV+E+L+ +GA D 
Sbjct: 828  IIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIKSGAFDV 887

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            +   R  L  SL+   K A+   +N+++   ++F+  +   +D+    +    + + R E
Sbjct: 888  WKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLED-KADEQNYVESKSWSEAQRLE 946

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ VLGFY +GHP D Y+  L    I    +   ++    I + A VV+ ++  T++G 
Sbjct: 947  GEREVLGFYLTGHPADQYRRELGDF-IVPVSQLNPSLHKKAI-ICAQVVAIRKIITKRGK 1004

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            ++  +   +     +A  F
Sbjct: 1005 KLVIIGMDDATARIDAVVF 1023


>gi|219685116|ref|ZP_03539936.1| DNA polymerase III subunit alpha [Borrelia garinii Far04]
 gi|219673212|gb|EED30231.1| DNA polymerase III subunit alpha [Borrelia garinii Far04]
          Length = 1161

 Score =  760 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1036 (38%), Positives = 611/1036 (58%), Gaps = 23/1036 (2%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A 
Sbjct: 14   GMSFKAKFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAK 73

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
              GI+PIIG +  +         +           ++LL     GY+ L++L S  YL +
Sbjct: 74   KVGIKPIIGIEAYMAKTSKFFKKHDDLGKMS--YHLILLAKNEIGYKNLLKLTSISYL-E 130

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y
Sbjct: 131  GFYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFY 189

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQRH   D+     ++V+ +    +PL ATN+S +++ ED  A D+++ +      S 
Sbjct: 190  LELQRHGIKDQDIVNERLVEYSRKLGVPLAATNDSHYVNREDAVAQDIIVCIGTGAKKSD 249

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKEC 300
            ++R ++ T + Y+K++ EM  +F+DLPEALENTV I  +   F +    PILP +     
Sbjct: 250  ENRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPIE 309

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             +        L    + GL+                 + R  +EL+VI RM F GYFLIV
Sbjct: 310  FN---TLGEYLEYLTLEGLK-------FRYKTLTSKIKDRAFYELSVIIRMGFEGYFLIV 359

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDI
Sbjct: 360  WDFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDI 419

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L KLIP
Sbjct: 420  DFCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKLIP 479

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P   VSL+ + DD+  +E   + P    L++ +  LEG+ RHASTHAAGIVI   PL+
Sbjct: 480  DGP--KVSLKEVLDDNSLKEYFTSKPVYKELMDAALVLEGMNRHASTHAAGIVISKTPLT 537

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
              VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  
Sbjct: 538  DYVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKN 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +T+ +L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  
Sbjct: 598  IPDNDVKTFKMLGEGKSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQ 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +   K G + I   HP +  +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK
Sbjct: 658  FIAAKKGVKSIKYPHPDLKEVLKPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++EM++ K  F+ GA + G  K +A  IFELL  F+ YGFNKSHAAAY++I+YQTA++K
Sbjct: 718  KEDEMNEMKVDFLRGAIEKGYDKEVASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L 
Sbjct: 778  ANYPQYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFKEFRVTDSGISYGLN 837

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AIK +G      I++    +  + S EDF  RVD K +N++ LES + +G  D    +R 
Sbjct: 838  AIKNLGEIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVENSSVRFENEQR 957
             L ++LD + +     + N+     ++F   KG    +     + F   + S   E E+ 
Sbjct: 898  TLFENLDRLIEVVSEDKNNKKLGQNSLFDVLKGQNPIQQNFNYQAFKEYSYSELLEFEKE 957

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIG 1016
            +LGFY SGHPLD YK  +         + +AT + + ++ + ++ S +  +T++ + ++ 
Sbjct: 958  LLGFYVSGHPLDPYKKAINSFSSLNVLKDLATKKDSVVQFSGILNSVKVIQTKRNNAKMA 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
            +    +     +   F
Sbjct: 1018 FGVIEDFKGAIDIVVF 1033


>gi|224582079|ref|YP_002635877.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Paratyphi C strain RKS4594]
 gi|224466606|gb|ACN44436.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Paratyphi C strain RKS4594]
          Length = 1144

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1032 (39%), Positives = 597/1032 (57%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K A+   PA+AITD  NL   ++F      AGI+PI+G   ++  + 
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNE- 59

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                          +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 60   ---------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-K 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIRTGRQDEETYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEALENTVEIA+RC+  +++           +        E+ L  K+  GL
Sbjct: 230  MCELFSDIPEALENTVEIAKRCNVTVRLGEYF-----LPQFPTGDMTTEDYLVKKSKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YNNR 664
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V       +   
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D   I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I++A      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG     A +V++ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|54293935|ref|YP_126350.1| DNA polymerase III, alpha chain [Legionella pneumophila str. Lens]
 gi|53753767|emb|CAH15225.1| DNA polymerase III, alpha chain [Legionella pneumophila str. Lens]
          Length = 1148

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1039 (41%), Positives = 624/1039 (60%), Gaps = 35/1039 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VH+ +SL++G + +  ++  + A     +A+TD  NLF+A++  + A  AGI+P
Sbjct: 4    RFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  L                   T+ S+VLL     GY+ L  LVS+ Y   Q     
Sbjct: 64   IIGSDL----------PCHDLEAPDTIFSLVLLCQDTTGYKNLTCLVSKAYQEGQYHGQP 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+ L W+ E  ++GLI L+GG  G I +A   N   +A KR L +  LF +R Y+ +QR 
Sbjct: 114  RVQLQWIPEF-SQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQRT 172

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
               D  +   +++ LA   +LPLVATN+  F+ E+D++AH+  + +     ++   R  +
Sbjct: 173  GRADELHYNEKLIALADELQLPLVATNDVRFIDEDDFDAHEARVCIHEGYTLADPRRVQQ 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YL++  EM  +FSDLP AL+NTVEI++RC+  L++    LP F   +        
Sbjct: 233  YSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDG----TTV 288

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYH-----AQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            E  L + +  GLE RL Q    K          +Y +RL  EL VI  M F+GYFLIVAD
Sbjct: 289  EAYLSHLSEIGLEERLKQLFRDKSEGELLAARGEYDKRLKIELAVINNMGFAGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD VI YV  KYG + V+QIITFG++ AKA +RDVGR L  PY  VD+L KLIP +
Sbjct: 409  CMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +S +A+  +   R     +  V  L +++ KLEG+ R+A  HA G+VI    L+  
Sbjct: 469  LGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAPSQLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
              +Y +  S   V+QF+   +E  GL+KFDFLGL+TLT++  +L  + ++        +D
Sbjct: 528  TAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENAGLSPID 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +S IP  D  T+ LL    T  +FQLES GM++ +  +QPDC EDIIALV+L+RPGP+ +
Sbjct: 588  ISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFRPGPLQS 647

Query: 658  IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +   + +RK+G+ ++   HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L  AD+LRR
Sbjct: 648  GMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRR 707

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM KQ+E F  GA   G+ + +A +IF+L+ KFA YGFNKSH+AAYA+++YQ
Sbjct: 708  AMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAYALVAYQ 767

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K HYP  F+AA M+ +MDN +K+  F  +     +Q++PPS+N     F V D + 
Sbjct: 768  TAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFTVSDEKT 827

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y L AIKGVG +    I++    + PF  L  FC R+D +K+NRRV+E+L+ +GA D 
Sbjct: 828  IIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIKSGAFDV 887

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            +   R  L  SL+   K A+   +N+++   ++F+  +   +D+    +    + + R E
Sbjct: 888  WKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLED-KADEQNYVESKSWSEAQRLE 946

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ VLGFY +GHP D Y+  L    I    +   ++    I + A VV+ ++  T++G 
Sbjct: 947  GEREVLGFYLTGHPADQYRRELGDF-IVPVGQLNPSLHKKAI-ICAQVVAIRKIITKRGK 1004

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            ++  +   +     +A  F
Sbjct: 1005 KLVIIGMDDATARIDAVVF 1023


>gi|83943739|ref|ZP_00956197.1| DNA polymerase III subunit alpha [Sulfitobacter sp. EE-36]
 gi|83845419|gb|EAP83298.1| DNA polymerase III subunit alpha [Sulfitobacter sp. EE-36]
          Length = 1177

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 497/1068 (46%), Positives = 678/1068 (63%), Gaps = 58/1068 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++P F+HL+ HS YSLLEGAL L  + D       PA+A+TDTNN+F+ALEFS     
Sbjct: 1    MAQAPRFIHLRTHSEYSLLEGALRLKKLPDLCKGADMPALALTDTNNMFAALEFSVAMAG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPIIGCQ+D+           G+ P    P +VLL  +  GY+ L++L S +Y+ D+
Sbjct: 61   AGVQPIIGCQVDLAY----VKVQPGEKPRDPAP-VVLLAQSEAGYENLMKLNSCLYI-DK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G    ++ L  L E    GLI LTGG+ GP+ +         AE  +      F DRLYV
Sbjct: 115  GGALPQVTLEEL-EALNGGLICLTGGAGGPVGQLLQGGQRPAAEALMARLHGAFADRLYV 173

Query: 185  NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G D      +  E   V++AY   +PLVATN+  F   + YEAHD L+ +A   
Sbjct: 174  ELQRHPGEDGQPVAEQLTERGFVEMAYDMGIPLVATNDVYFPKADMYEAHDALICIADGA 233

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q+  R R+T  HY K+++EMV++F+DLPEA+ENTVEIA+RC+F+            +
Sbjct: 234  YVDQQHERRRLTAQHYFKSQAEMVTLFADLPEAIENTVEIAKRCAFMAY--------RRD 285

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    +E  EL+ +A  GL+ RL    I      ++Y +RLDFEL +I  M F GYF
Sbjct: 286  PILPKFADDEIEELKRQAHEGLKNRLK--VIPHATTVEEYEKRLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK NNIPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKDNNIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIQYVQRKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS++  +AD+ R RE    +  V RLL   Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALADEPRLREEAKNEEVVARLLNYGQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D +   G  +
Sbjct: 524  RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDQIKSSGRHL 583

Query: 597  D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                               ++ IP DD  +Y L  +  T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  HVAADGTELFEPPEGLIDDIATIPLDDEASYKLYASAKTVAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI VY   KNG+ +  S+HP ID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPVYCEVKNGQRERESVHPSIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKI EEM K++ +F  GA  NG+ K  A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAMANGVDKKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ R +  +  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKRLELPWV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA----DKPFDSLEDFCSRVD 873
            PP VN     FKV +  + Y+L A+K VG    + I E       DKPF +L D   RVD
Sbjct: 824  PPCVNRSDATFKVVEGALVYALGALKNVGVEAMKLITEGRKVDGVDKPFATLFDLARRVD 883

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             K++ +R LE L  +GA D    +R ++ QSLD +  Y+  + + + +   ++F  E G 
Sbjct: 884  LKRVGKRPLEMLARSGAFDQLDNNRRRVWQSLDGLVSYSAAIHEQKASNQVSLFG-EAGD 942

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK------GYEESV 987
               +  +       ++ R   E + +GFY SGHPLD Y   +++            +E  
Sbjct: 943  DLPEPRIVPCDDWEAAERLTEEFKAVGFYLSGHPLDDYMGPMKRKSATGGVPFLTLDELT 1002

Query: 988  ATIRGN---NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +      N RLA +V  +Q++K+ +G+R  +   S+P   YE   F
Sbjct: 1003 EKVSVKGAMNARLAGIVAGRQERKSARGNRFAFAQLSDPTGAYEVTLF 1050


>gi|94501921|ref|ZP_01308431.1| DNA polymerase III, alpha subunit [Oceanobacter sp. RED65]
 gi|94425974|gb|EAT10972.1| DNA polymerase III, alpha subunit [Oceanobacter sp. RED65]
          Length = 1164

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/1051 (38%), Positives = 597/1051 (56%), Gaps = 41/1051 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  + SFVHL+VH+ YSL++G + +  ++    ADQQ A+ I+D +N+F+ ++F     A
Sbjct: 1    MSNNNSFVHLRVHTEYSLVDGIVRVKELIKAADADQQIALTISDQSNMFALVKFYTACQA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PII   + I+  D++              +I L+     GY+ L ELVS  +  +Q
Sbjct: 61   TGIKPIISADVFIENPDDM----------ANPYAITLIAQNDVGYRNLTELVSAGFTKNQ 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 ++   W +E   +GLI L+G   G I+ A   +  ++A  RL  + +LF  R Y+
Sbjct: 111  HHDRAQLKQEWFEEK-ADGLIALSGFQRGDIEEALKKDKFELAASRLDRWLELFPQRFYL 169

Query: 185  NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR  R  D     + ++LA   ++P+VATN+  F+ ++D++AH+  + +     +   
Sbjct: 170  ELQRTQRPNDEALLQKSIKLAADKQVPVVATNDVRFMKQDDFDAHEARVCIGEGMTLIDP 229

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R +   Y K + +M  +F D+P A+ N+VEIA RC+  + +    LP +   +   
Sbjct: 230  RRERRYSDQQYFKTQQQMCELFEDIPSAITNSVEIATRCNVQVLLGKYFLPEYPIPDG-- 287

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ----RLDFELNVIARMKFSGYFL 358
                E    +  +  GLE RL           ++ R+    RLDFEL++I +M F GYFL
Sbjct: 288  --LTENEFFKKISYEGLEERLEFLIDKNDPQYEEVRKAYFDRLDFELDIIIQMGFPGYFL 345

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFIQWAK ++IPVGPGRGSGAGS+ AYA  ITDIDPL + LLFERFLNP+R+SMPDF
Sbjct: 346  IVMDFIQWAKDHDIPVGPGRGSGAGSLVAYAQKITDIDPLEYDLLFERFLNPERVSMPDF 405

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFC ++RD VI YV + YG E V+QI+T+G++ AKA +RDV R     Y   D+L KL
Sbjct: 406  DIDFCMEKRDRVISYVADNYGREAVSQIVTYGTMAAKAVVRDVARVQGKSYGLADKLSKL 465

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP DP   +  +A+ ++    E   +D     + E++QKLEG+ R    HA G+VI    
Sbjct: 466  IPGDPGMTL-AKALDEEPALGEFIDSDEEAQEIWEMAQKLEGITRQTGKHAGGVVIAPTK 524

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-----FLAQRG 593
            L+   P   +      VTQF+   +E AGL+KFDFLGL+TLT++  +L+           
Sbjct: 525  LTDFSPTLCEEDGTGLVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALNTINDIRAKNNE 584

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              + +  IP DD  +Y LL    T  +FQLES GM+  +  ++PD IE++IALV+L+RPG
Sbjct: 585  EPLRIEEIPLDDAPSYKLLKEAKTTAVFQLESRGMKDLIRRLEPDNIEEMIALVALFRPG 644

Query: 654  PIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            P+++ +   + NRK+G+ ++   HP      +  +L+ T GVI+YQEQVMQIAQ+L+GY+
Sbjct: 645  PLESGMVDDFINRKHGRAEVAYPHPDYQHESLKEILEPTYGVIVYQEQVMQIAQVLAGYT 704

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM KQ+E F  GA+  G    +A+ IF+L+ KFA YGFNKSH+
Sbjct: 705  LGGADMLRRAMGKKKPEEMAKQRETFREGAASIGNDPDLAMKIFDLVEKFAGYGFNKSHS 764

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYAV+SYQT W+KTHYP  F+AA +T +M N +K+  F ++ R+  + ++ P VN    
Sbjct: 765  AAYAVVSYQTLWLKTHYPAPFMAAVLTSDMQNTDKVVIFIEECREMGLDLVLPDVNESEY 824

Query: 827  DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLES 884
             F V D   I Y L A+KGVG      I+ A  +  PF  L  FC  VD  K+N+RVLE+
Sbjct: 825  GFTVNDSGAIVYGLGAVKGVGEGPIEAIITARKEKGPFTDLFHFCKSVDKSKINKRVLEA 884

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLE- 941
            LV  GA D  G +R  L  S+++  K A    KN      ++F    E+   +     + 
Sbjct: 885  LVRCGAFDKIGPNRSVLFASIEDALKAADQSAKNAAAGMMDMFGVVEEEANINPYDEYKN 944

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            K        + + E+  LG Y +GHP D Y+  L+ +         A       ++A +V
Sbjct: 945  KVRDWTPKQKLKGEKDTLGLYVTGHPFDEYETELKNIARTRLANIQA--DKKPQKIAGIV 1002

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V ++  KT++G  +  VT  +     +   F
Sbjct: 1003 VDQRVMKTKRGGNMAIVTIDDRTARMDVRLF 1033


>gi|148360386|ref|YP_001251593.1| DNA polymerase III subunit alpha [Legionella pneumophila str. Corby]
 gi|148282159|gb|ABQ56247.1| DNA polymerase III, alpha subunit [Legionella pneumophila str. Corby]
          Length = 1148

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1039 (40%), Positives = 621/1039 (59%), Gaps = 35/1039 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VH+ +SL++G + +  ++  + A     +A+TD  NLF+A++  + A  AGI+P
Sbjct: 4    RFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  L                    + S+VLL     GY+ L  LVS+ Y   Q     
Sbjct: 64   IIGSDL----------PCHDLETPDNIFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHGQP 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+ L W+ E    GLI L+GG  G I +A   N   +A KR L +  LF +R Y+ +QR 
Sbjct: 114  RVQLQWIPEFSR-GLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQRT 172

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
               D  +   +++ LA   +LPLVATN+  F+ E+D++AH+  + +     ++   R   
Sbjct: 173  GRADELHYNEKLIALADELQLPLVATNDVRFIDEDDFDAHEARVCIHEGYTLADPRRVQH 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YL++  EM  +FSDLP AL+NTVEI++RC+  L++    LP F   +        
Sbjct: 233  YSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDG----TTV 288

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYH-----AQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            E  L + +  GLE RL Q    K          +Y +RL  EL+VI  M F+GYFLIVAD
Sbjct: 289  EAYLSHLSEVGLEERLKQLFRDKSEGELLAARGEYDKRLKIELDVINNMGFAGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD VI YV  KYG + V+QIITFG++ AKA +RDVGR L  PY  VD+L KLIP +
Sbjct: 409  CMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +S +A+  +   R     +  V  L +++ KLEG+ R+A  HA G+VI    L+  
Sbjct: 469  LGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAPSQLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
              +Y +  S   V+QF+   +E  GL+KFDFLGL+TLT++  +L  + ++        +D
Sbjct: 528  TAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENAGLSPID 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +S IP  D  T+ LL    T  +FQLES GM++ +  +QPDC EDIIALV+L+RPGP+ +
Sbjct: 588  ISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFRPGPLQS 647

Query: 658  IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +   + +RK+G+ ++   HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L  AD+LRR
Sbjct: 648  GMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRR 707

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM KQ+E F  GA   G+ + +A +IF+L+ KFA YGFNKSH+AAYA+++YQ
Sbjct: 708  AMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAYALVAYQ 767

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K HYP  F+AA M+ +MDN +K+  F  +     +Q++PPS+N     F V D + 
Sbjct: 768  TAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFTVSDEKT 827

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y L AIKGVG +    I++    + PF  L  FC R+D +K+NRRV+E+L+ +GA D 
Sbjct: 828  IIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIKSGAFDV 887

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            +   R  L  SL+   K A+   +N+++   ++F+  +   +D+    +    + + R E
Sbjct: 888  WKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLED-KADEQNYVESKSWSEAQRLE 946

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ VLGFY +GHP D Y+  L    I    +   ++    I + A VV+ ++  T++G 
Sbjct: 947  GEREVLGFYLTGHPADQYRRELGDF-IVPVSQLNPSLHKKAI-ICAQVVAIRKIITKRGK 1004

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            ++  +   +     +A  F
Sbjct: 1005 KLVIIGMDDATARIDAVVF 1023


>gi|321222185|gb|EFX47257.1| DNA polymerase III alpha subunit [Salmonella enterica subsp. enterica
            serovar Typhimurium str. TN061786]
          Length = 1144

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1032 (40%), Positives = 597/1032 (57%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K A+   PA+AITD  NL   ++F      AGI+PI+G   ++  + 
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNE- 59

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                          +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 60   ---------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-K 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEALENTVEIA+RC+  +++           +        E+ L  KA  GL
Sbjct: 230  MCELFSDIPEALENTVEIAKRCNVTVRLGEYF-----LPQFPTGDMTTEDYLVKKAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YNNR 664
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V       +   
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D   I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I++A      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG     A +V++ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|300993595|ref|ZP_07180451.1| DNA polymerase III subunit alpha [Escherichia coli MS 45-1]
 gi|300406518|gb|EFJ90056.1| DNA polymerase III subunit alpha [Escherichia coli MS 45-1]
 gi|315294588|gb|EFU53935.1| DNA polymerase III subunit alpha [Escherichia coli MS 153-1]
          Length = 1144

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1032 (40%), Positives = 606/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57   ------QCDLLGDELTHLTVLAANNIGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V  D  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG     A +VV+ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|326621935|gb|EGE28280.1| DNA polymerase III, alpha subunit [Salmonella enterica subsp.
            enterica serovar Dublin str. 3246]
          Length = 1144

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1032 (40%), Positives = 597/1032 (57%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K A+   PA+AITD  NL   ++F      AGI+PI+G   ++  + 
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNE- 59

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                          +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 60   ---------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-K 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEALENTVEIA+RC+  +++           +        E+ L  KA  GL
Sbjct: 230  MCELFSDIPEALENTVEIAKRCNVTVRLGEYF-----LPQFPTGDMTTEDYLVKKAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YNNR 664
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V       +   
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D   I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I++A      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG     A +V++ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|320531635|ref|ZP_08032577.1| DNA polymerase III subunit alpha [Actinomyces sp. oral taxon 171 str.
            F0337]
 gi|320136164|gb|EFW28170.1| DNA polymerase III subunit alpha [Actinomyces sp. oral taxon 171 str.
            F0337]
          Length = 1197

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/1070 (33%), Positives = 567/1070 (52%), Gaps = 54/1070 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YS+L+GA  + + + +     QPA+AITD   +F A EF   A AAGI+P
Sbjct: 15   DFVHLHVHTDYSMLDGAGKIKDYVAEAKRLGQPALAITDHGYMFGAYEFYAAATAAGIKP 74

Query: 70   IIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            IIG +  +               +    +   +   +   + LL    EG   L+ + S 
Sbjct: 75   IIGVEAYMTPGTSRFDKTRVFWGDESQRSDDVSARGSYTHMTLLSRNNEGLHNLMRMDSF 134

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L  Q  ++ RI    L    + GLI  TG  S  +           A +     + +F
Sbjct: 135  ASLEGQWGKAPRIDRELLSRY-SGGLIGSTGCPSSEVQTRLRLGQWDEALRTAGELQDIF 193

Query: 179  G-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            G +  YV L  H    ++     +++LA     PL+ATN+S ++  ED    D ++ +  
Sbjct: 194  GKEFFYVELMDHGLEIEQRVTKDLLRLAQEIGAPLLATNDSHYVRPEDRTIQDAMLCINS 253

Query: 237  STVVSQKDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
             +V+S  DR R   D Y     SEM  +FS++P+A +NT+ +A +C    +        F
Sbjct: 254  GSVLSDPDRFRFDGDTYYLRPGSEMRRLFSEMPQACDNTLLVAEQCDVHFRTVD-EGASF 312

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +        + +E+    +   G++ R        G   +D R++ ++E++VI +M F G
Sbjct: 313  MPAFPVPEGETDESWFIKECWRGMDHRF------NGDIPEDCRKQAEYEISVITQMGFPG 366

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+VAD+I WAK + I VGPGRGSGAGS+ AYA+ IT+++PLR  L+FERFLNP+R+SM
Sbjct: 367  YFLVVADYINWAKAHGIRVGPGRGSGAGSMVAYAMGITELNPLRHGLIFERFLNPERISM 426

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DF + RRDEVI YV+ KYG +R++Q++T+G ++AK +L+D  R +  PY+  DRL
Sbjct: 427  PDIDVDFDERRRDEVIEYVREKYGADRISQVVTYGVIKAKQSLKDSSRVMGYPYAVGDRL 486

Query: 476  CKLIPND-PAHPVSLQAIA--------DDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
             K +P       +S++ I         +   FR+    DP   +++E+++ LEG+ R   
Sbjct: 487  TKAMPPSVQGKDISIKGIFNPDDERYGEAEEFRKLHAEDPDAQKIVELAKGLEGMTRQWG 546

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HA  +++    L+ ++PM + ++    +TQF+    E  GL+K DFLGL+ LT++  +L
Sbjct: 547  VHACAVIMSSATLTDIIPMMQRLQDGAVITQFDYPTCEHLGLLKMDFLGLRNLTVISDAL 606

Query: 587  DFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            + +   G    D+  +  DD  TY LL+   TLG+FQL+  GMR  L  M+PD  EDI A
Sbjct: 607  ENIVANGKPALDIDHVELDDRATYELLSRGETLGVFQLDGGGMRTLLRLMKPDNFEDISA 666

Query: 646  LVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQIA 699
            + +LYRPGP+  ++   Y  RKNG +++V IHP     +DP+L  T G+I+YQEQVM+IA
Sbjct: 667  VGALYRPGPMGAESHTNYALRKNGLQEVVPIHPELKDALDPILGTTHGLIVYQEQVMKIA 726

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
              L+G+S+ +AD LR+AMGKK  + + K    F +G  + G SK     +++++  FA Y
Sbjct: 727  TDLAGFSMGKADALRKAMGKKKMDILAKMFVEFEAGMVQAGFSKESVKTLWDVVVPFAKY 786

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNK+H+AAY V+SY TA++K HYP E++AA +T + DN +K+  +  + R   I ++PP
Sbjct: 787  AFNKAHSAAYGVVSYWTAYLKAHYPTEYMAALLTSQKDNKDKLAVYLGECRHMGITVLPP 846

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLN 878
             VN     F   D  + + L+A++ VG      I+ A  +   F S EDF  +V +   N
Sbjct: 847  DVNASRAQFSAVDEDVRFGLSAVRNVGINVVDAIVAAREEKGEFTSFEDFLDKVPAVVCN 906

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK- 937
            +R ++SL+ AGA D  G++R  L    ++       V++N      ++FA   G   D  
Sbjct: 907  KRTIDSLIKAGAFDSLGHTRRSLQACHEDFVDEVIGVKRNEAAGQFDLFASLVGGPDDAD 966

Query: 938  -----------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
                         +      +   +   E+ +LG Y S HPL   + +L K+  K   E 
Sbjct: 967  DSPFGNGPVFSSDVPNLPEWDKKDKLAYERDMLGLYVSDHPLMGLEGLLGKLADKEISEL 1026

Query: 987  ---VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    G  + +A ++ S  +K T++G+        + A   E  FFP
Sbjct: 1027 HENDELPDGAMVTIAGLITSLTRKTTKQGNLWAIAQVEDLAGSVEVLFFP 1076


>gi|332038321|gb|EGI74766.1| DNA polymerase III alpha subunit [Pseudoalteromonas haloplanktis
            ANT/505]
          Length = 1163

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1050 (40%), Positives = 592/1050 (56%), Gaps = 43/1050 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P FVHL+VHS +S+++G      I+ K    Q PAIAITD  N    + F      
Sbjct: 1    MA-APDFVHLRVHSDFSMVDGLAKTKPIVAKAQELQMPAIAITDQMNFCGLVRFYGATHN 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G    +          +          + +L    +GY+ +  L+S+ Y    
Sbjct: 60   AGIKPIVGADFWV----------RSPEFPDEPSRLTILAKDNDGYKNITLLISKAYQRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E+   GLI+L+G   G + +A   N+  V E  +  +K+ F D  Y+
Sbjct: 110  VFHRPVIDREWLVELKA-GLIILSGAKDGDLGKALLKNNPTVIESVVSFYKQHFSDNYYL 168

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R +R  +       V+LA   +LP+VATN  +FL  E++EAH++ +A+     +  K
Sbjct: 169  ELVRTNRPLEEDYLHMAVELAAKEQLPVVATNEVVFLKPENFEAHEIRVAIFDGYTLDDK 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP R + + YLK   +M  +FSD+PEAL+NTVEIA+RC+  +Q+       +   +   
Sbjct: 229  RRPKRFSEEQYLKTPEQMAELFSDIPEALQNTVEIAKRCNVTVQLGT-----YFLPDYPT 283

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               + E+ L   +  GLE     L      +     +Y +RL  EL VI +M F GYFLI
Sbjct: 284  GSLKIEDFLVKVSQDGLEERLQFLFPDEEDRKVKRVEYDERLAIELGVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDRRDEVIDHVSALYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + R +EA   D  V  L+++ + LEG  R+A  HA G+VI    +
Sbjct: 464  PGDPGMTL-AKAFDVEPRLQEAYDGDNEVKDLIDMCRILEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            +    +Y D     PVTQF+   +E AGL+KFDFLGL+TLT+LQ ++D    R  +    
Sbjct: 523  TDFAALYCDDEGKFPVTQFDKNDVETAGLVKFDFLGLRTLTILQWAVDMTNVRMKRQGKD 582

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP DD ++  LL    T  +FQLES GM+  +  ++PDC ED+IALV+L+RPGP
Sbjct: 583  PVDINTIPLDDKKSIELLLRAETTAVFQLESRGMKDLVRRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVVYN-------NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V N         +         H  + P+L  T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKLGREEISYPDAQYQHESLKPILDPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRSTFEDGARNNGIDGELAIKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT WMKTH+P EF+AA M+ +MDN +KI     +     + ++PP VN     
Sbjct: 763  AYALVSYQTLWMKTHHPAEFMAAVMSADMDNTDKIVILVDECENMKLTLLPPDVNAGEFK 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  +  I Y + AIKGVG      I+EA     PF  L DFC+RVD K+LN+RV E L
Sbjct: 823  FTVNLEGEIVYGIGAIKGVGEAPVDAILEARAKGGPFKDLFDFCARVDLKRLNKRVTEKL 882

Query: 886  VFAGALDCFGYS-----RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KIT 939
            ++AGALD  G       R  LL SL +  + A    K       ++F        + +  
Sbjct: 883  IYAGALDQLGPEKTQSGRATLLASLKDAMRAADQHNKAEQLGQSDLFGLLATEPDEVEQA 942

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
              K +    +   + E+  LG Y +GHP++ Y+  LR        +   T R      A 
Sbjct: 943  FIKATGLTDNEWLDGEKETLGLYLTGHPINQYRRELRHYTSGKIVDLQPTNRDVFATAAG 1002

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            +V++ +    +KG+R   VT  + +   + 
Sbjct: 1003 LVIASRVLINKKGNRWALVTLDDKSARIDV 1032


>gi|152995316|ref|YP_001340151.1| DNA polymerase III subunit alpha [Marinomonas sp. MWYL1]
 gi|150836240|gb|ABR70216.1| DNA polymerase III, alpha subunit [Marinomonas sp. MWYL1]
          Length = 1158

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1047 (39%), Positives = 581/1047 (55%), Gaps = 39/1047 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SF+HL+VH+ +SL++G + +  +L        PA+AITD NNL   + F + A   GI
Sbjct: 2    STSFIHLRVHTEFSLVDGLVKIKGLLGTTEFMSMPAVAITDENNLCGFVRFYKGAMEKGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G            +         +     LL ++ +GY+ +I ++S+ Y L Q + 
Sbjct: 62   KPICG----------ADVVVAEDDDVDSRYRFTLLATSNKGYKNIIAIISKGYQLGQVEG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I   W+ E  +E +I L+G   G I         + A+ RL  +  +F +R YV LQ
Sbjct: 112  RPIIQREWI-ETHSEDVIALSGAGFGDIGYLLQKGRHEQAKNRLAHWMSIFPNRFYVELQ 170

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            R  R  +      VV LA   + P+VATN+  FL  E++EAH+  + +     +    R 
Sbjct: 171  RTSRPGEESYIHAVVPLAGELDCPVVATNDVRFLKRENFEAHEARVCIHDGVTLDDPRRK 230

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R + + Y K   EM  +F D+PEALENTVEIA+RCS  + +    LP +   E      
Sbjct: 231  RRYSEEQYFKTPEEMAELFQDIPEALENTVEIAKRCSVDVLLGEYFLPDYPVPEGM---- 286

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYH----AQDYRQRLDFELNVIARMKFSGYFLIVA 361
              E      +  GL  R        G       Q+Y  RLDFEL +I +M F GYFLIV 
Sbjct: 287  TMEEFFSKLSYDGLIERFNFLTKKYGERIEKRRQEYWDRLDFELTIINQMGFPGYFLIVM 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFIQWAK N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID
Sbjct: 347  DFIQWAKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDID 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D RD VI YV   YG + V+QIITFG++ AKA +RDV R    PYS  D+L KLIP 
Sbjct: 407  FCMDNRDRVIDYVSRTYGRDAVSQIITFGAMAAKAVVRDVARVQGKPYSLGDKLSKLIPF 466

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +  +A+ ++    E    D     ++E++  LEG+ R+   HA G+VI    L  
Sbjct: 467  EIGMTLK-KALEEEPALPEFLAGDEDAAEVMEMAISLEGVVRNFGKHAGGVVIAPTKLID 525

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-----DFLAQRGVKV 596
              P+Y +      VTQ++   +E+AGL+KFDFLGLKTLT++  ++         +    +
Sbjct: 526  FAPLYCEEDGSGLVTQYDKNDVEEAGLVKFDFLGLKTLTVVDWAVKNIDAINELEGKPPL 585

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+SLI  +D  TY LL    T  +FQLES GM++ ++ + P   EDIIALV+LYRPGP+ 
Sbjct: 586  DISLIDLEDRSTYDLLKRAETTAVFQLESRGMKELIKKLLPSRFEDIIALVALYRPGPLG 645

Query: 657  NIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V +                   H  + P+L+ T G+I+YQEQVMQIAQ+L+ +SL  
Sbjct: 646  SGMVDDFINRKHGRAELAFPHPDYQHQDLIPVLEPTYGIILYQEQVMQIAQVLAKFSLGG 705

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  E M +Q+  F+ GA KN I K ++ NIF+L+ KFA YGFNKSH+AAY
Sbjct: 706  ADLLRRAMGKKKPEVMAEQRLIFMEGALKNNIDKDLSGNIFDLMEKFAGYGFNKSHSAAY 765

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQTAW+K HYP  F+AA ++ +M N +KI  F ++ R   + +  P+VN     F 
Sbjct: 766  ALVSYQTAWLKNHYPAPFMAAVLSADMQNTDKIVIFIEECRSMKLALELPNVNESVFKFT 825

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            V     I Y L AIKGVG      I+EA  D PF+ + DFC RV  +K+N+RV+E+LV +
Sbjct: 826  VNPKGAIVYGLGAIKGVGEGPIDAIVEARKDGPFEHIFDFCQRVG-RKVNKRVMEALVRS 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVE 946
            GA D  G +R  L   +D   K A    KN+     ++F    E+ T      +      
Sbjct: 885  GAFDTIGPNRATLFACIDEALKRAVQDAKNQDAGMMDLFGITVEENTEDAYREIGIQHEW 944

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                R + E+  LG Y +GHP+D Y+  +R+       +         + +A ++V  + 
Sbjct: 945  PPRQRLDGEKDTLGLYVTGHPIDEYEKEIRRFVRSKIVDLQPKRGDTQV-MAGLIVDLRI 1003

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             K++KG  I +VT  + +   E   FP
Sbjct: 1004 TKSKKGGNIAFVTLDDRSARIEVTVFP 1030


>gi|301049902|ref|ZP_07196828.1| DNA polymerase III subunit alpha [Escherichia coli MS 185-1]
 gi|300298355|gb|EFJ54740.1| DNA polymerase III subunit alpha [Escherichia coli MS 185-1]
          Length = 1144

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1032 (40%), Positives = 606/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1    MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57   ------QCDLLGDELTHLTVLAANNIGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230  MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V  D  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG     A +VV+ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYAGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|226226143|ref|YP_002760249.1| DNA polymerase III alpha subunit [Gemmatimonas aurantiaca T-27]
 gi|226089334|dbj|BAH37779.1| DNA polymerase III alpha subunit [Gemmatimonas aurantiaca T-27]
          Length = 1165

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1047 (36%), Positives = 567/1047 (54%), Gaps = 37/1047 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  HS YSLL+GA  +++++ +    + PA+AITD  N+ +A EF +KA  AGI+P
Sbjct: 2    SFVHLHCHSEYSLLDGANRIDDLIKRAQHFEMPALAITDHGNMHAAWEFQEKARKAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +  +   D  +         P    +VLL     GY+ L++L S  Y  +      
Sbjct: 62   ILGMEAYVAPGDRRQRGRPAPGVKP-YYHLVLLARDIVGYRNLVKLTSLGYT-EGFYTKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L +  +EGLI+ +   +G +      +    A +    + +LF  R ++ +Q H
Sbjct: 120  RIDRELLAQY-SEGLIVSSACLAGEVASHLMEDRVDQAREAAAWYAELFKGRYHLEVQAH 178

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +    ++++ LA    LP+VATN++ FL  ED++AHDVL+ +      + +DR + 
Sbjct: 179  TSEGQAILNAKILSLADELSLPVVATNDAHFLKHEDHDAHDVLLCIGLGKDRNDRDRMKY 238

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                Y K   E+ + F    + L NT+ IA             +P F   E       E 
Sbjct: 239  DDGLYFKAPDEIRTFFPGREDVLTNTLAIADAVDVQF-AKKYYVPSFPLPEG---VATEN 294

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L   A  G + R      A        ++RLD+EL VI +  ++GYFLI ADFI+ A+
Sbjct: 295  DMLVQIATDGAKERYGDPLPAN------VQERLDYELGVITKTGYAGYFLITADFIKAAR 348

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               IPVGPGRGS AGS+ AYA  ITD+ PL F LLFERFLNP+R+SMPD D+DFC +RR 
Sbjct: 349  DRGIPVGPGRGSAAGSLVAYATRITDVCPLEFDLLFERFLNPERVSMPDVDVDFCFERRG 408

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV+ KYG + V QI+TFG+++++AA++DVGR L    ++ D L KLIPN P   ++
Sbjct: 409  EVIEYVRQKYGKDSVGQIVTFGTMKSRAAIKDVGRTLGFTPAETDALAKLIPNAPNFSLT 468

Query: 489  LQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            ++  I      +     D    +LL+ + KLEGL RH   HAAG+VI   PL + VP+  
Sbjct: 469  VKEAIEQVPEVKAFYKNDERYRQLLDFAVKLEGLSRHTGVHAAGVVIAPGPLDEFVPICT 528

Query: 548  DVRSD--------LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598
                         + VTQ++M  +EKAG++K DFLGL TLT++  +L  + +R G  V L
Sbjct: 529  QASKGAGGDGDERVIVTQYDMTALEKAGMLKMDFLGLTTLTVITDTLRNIKERLGKDVVL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID-- 656
                F D +TY +L    T G+FQ ES      L+ M+ D  +D++A  +L RPGP+D  
Sbjct: 589  EERGFTDEKTYQVLRAGRTGGVFQFESPLATDVLKRMRCDRFDDLVASNALLRPGPLDAG 648

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
               VY  RK G+E  V   P ++P+L  T GVI YQEQVM+IAQ+L+G SL+EADVLR+A
Sbjct: 649  MHNVYIRRKRGEEPTVYALPELEPILSNTYGVITYQEQVMRIAQVLAGISLAEADVLRKA 708

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            +GKK  E + K+  +F   A   G SK I   +   +  F  YGFNKSH+ AY+V++Y T
Sbjct: 709  VGKKDAELIKKELGKFTEKAIARGYSKKIIEELAGQIETFGRYGFNKSHSVAYSVVAYHT 768

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRI 835
            A++KTHYP EF+AA ++  +   E++ K+  +AR+  I+++ P VN     F V GD RI
Sbjct: 769  AYLKTHYPAEFMAALLSSNIGKTEEVIKYIAEAREMGIEVLAPDVNESGWRFTVIGDKRI 828

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             + L AI+ VG      ++ A  +  F +L D C RVD +  N+RV E+LV AGA D  G
Sbjct: 829  RFGLGAIRNVGKGAIDSLLAARTEGAFPTLHDLCGRVDLRLCNKRVFEALVAAGACDTLG 888

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--------SDKITLEKFSVEN 947
              R QLL +LD+    A   ++       ++F    G          +    L   ++ +
Sbjct: 889  GHRAQLLGALDHAISEASLQQEEAERGQGSLFGDLMGDAPGNGGGNNAAPQMLPNIAMWS 948

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             S R + E+ +LGFY SGHPL+ ++            +         + +  +V + +++
Sbjct: 949  ESERLQREKELLGFYISGHPLEPHRTECELFATSTVAKLGTWTA-EPVTIGVVVTAIRKQ 1007

Query: 1008 KTRK-GSRIGWVTFSEPAKEYEANFFP 1033
             +++ G+    +T  + +   E   FP
Sbjct: 1008 ISKRTGAEFARLTVEDFSGSSEVLVFP 1034


>gi|307609756|emb|CBW99268.1| DNA polymerase III, alpha chain [Legionella pneumophila 130b]
          Length = 1148

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 425/1039 (40%), Positives = 624/1039 (60%), Gaps = 35/1039 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VH+ +SL++G + +  ++  + A     +A+TD  NLF+A++  + A  AGI+P
Sbjct: 4    RFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  L                    + S+VLL     GY+ L  LVS+ Y   Q     
Sbjct: 64   IIGSDL----------PCHDLETPDNIFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHGQP 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+ L W+ E  ++GLI L+GG  G I +A   N   +A KR L +  LF +R Y+ +QR 
Sbjct: 114  RVQLQWIPEF-SQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQRT 172

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
               D  +   +++ LA   +LPLVATN+  F+ E+D++AH+  + +     ++   R  +
Sbjct: 173  GRADELHYNEKLIALADELQLPLVATNDVRFIDEDDFDAHEARVCIHEGYTLADPRRVQQ 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YL++  EM  +FSDLP AL+NTVEI++RC+  L++    LP F   +        
Sbjct: 233  YSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDG----TTV 288

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYH-----AQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            E  L + +  GLE RL Q    K          +Y +RL  EL+VI  M F+GYFLIVAD
Sbjct: 289  EAYLSHLSEIGLEERLKQLFRDKSEGELLAARGEYDKRLKIELDVINNMGFAGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD VI YV  KYG + V+QIITFG++ AKA +RDVGR L  PY  VD+L KLIP +
Sbjct: 409  CMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +S +A+  +   R     +  V  L +++ KLEG+ R+A  HA G+VI    L+  
Sbjct: 469  LGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGITRNAGKHAGGVVIAPSQLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
              +Y +  S   V+QF+   +E  GL+KFDFLGL+TLT++  +L  + ++        +D
Sbjct: 528  TAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENAGLSPID 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +S IP  D  T+ LL    T  +FQLES GM++ +  +QPDC EDIIALV+L+RPGP+ +
Sbjct: 588  ISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFRPGPLQS 647

Query: 658  IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +   + +RK+G+ ++   HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L  AD+LRR
Sbjct: 648  GMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRR 707

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM KQ+E F  GA   G+ + +A +IF+L+ KFA YGFNKSH+AAYA+++YQ
Sbjct: 708  AMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAYALVAYQ 767

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K HYP  F+AA M+ +MDN +K+  F  +     +Q++PPS+N     F V D + 
Sbjct: 768  TAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFTVSDEKT 827

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y L AIKGVG +    I++    + PF  L  FC R+D +K+NRRV+E+L+ +GA D 
Sbjct: 828  IIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIKSGAFDV 887

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            +   R  L  SL+   K A+   +N+++   ++F+  +   +D+    +    + + R E
Sbjct: 888  WKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLED-KADEQNYVESKSWSEAQRLE 946

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ VLGFY +GHP D Y+  L    I    +   ++    I + A VV+ ++  T++G 
Sbjct: 947  GEREVLGFYLTGHPADQYRRELGDF-IVPVGQLNPSLHKKAI-ICAQVVAIRKIITKRGK 1004

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            ++  +   +     +A  F
Sbjct: 1005 KLVIIGMDDATARIDAVVF 1023


>gi|206560768|ref|YP_002231533.1| DNA polymerase III subunit alpha [Burkholderia cenocepacia J2315]
 gi|198036810|emb|CAR52710.1| putative DNA polymerase III alpha subunit [Burkholderia cenocepacia
            J2315]
          Length = 1177

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1044 (38%), Positives = 606/1044 (58%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + +++I+   AAD Q A+A+TD  N F  + F Q+A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   KGIKPIAGCDVWIANPDDRDKP----------SRLLLLVKDKVGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL     +GL+ L+G   G I  A    + + A +    + ++F    Y+
Sbjct: 110  YRGRAELDASWLDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAERWARVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q   LA + +LP+VAT+ + F++++D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T D Y + + +M ++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   
Sbjct: 230  RRQKRFTTDQYFRTQDDMAALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAI---AKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GLE RLAQ       +      Y +RL+FE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSKEGLETRLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKAD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L A+KG G      I+ A  +K F  L DFC R+D + +NRR +E+L+ A
Sbjct: 826  GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R QL+ S+    + A   E N       +F     +      L      + 
Sbjct: 886  GAFDSLNPNRAQLIASVPLAMEAADQAEANAM--QAGLFDMGAES-PHAHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   +           +A ++ S + + 
Sbjct: 943  KRRLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKVGDLKEGRDK---LVAGIIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MLIALLDDGTGQCEITIF 1022


>gi|293390623|ref|ZP_06634957.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans D7S-1]
 gi|290951157|gb|EFE01276.1| DNA polymerase III subunit alpha [Aggregatibacter
            actinomycetemcomitans D7S-1]
          Length = 1158

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1046 (38%), Positives = 597/1046 (57%), Gaps = 38/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHLQVHS +S+++G   +  ++     +   A+ +TD  N    + F  +A ++G
Sbjct: 2    SQPRFVHLQVHSDFSMIDGIAKVKPLVKACVGNGMVAVGLTDFTNFCGLVRFYGEALSSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG  + +          Q          + LL    EGY+ +  L+S+ Y      
Sbjct: 62   VKPIIGTDVLV----------QSALCGDEKFRLTLLAKNNEGYKNITLLLSKAY-ERGYA 110

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E    G+I+L+GG +G + +    ++    +  +  +++ F D  Y+ L
Sbjct: 111  DLPYIDQQWLVE-HRAGVIVLSGGVNGDVGKKLLRSNPDELKSAVDFYREFFPDHFYLTL 169

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R     ++LA   +LP+VATN+  FL  ED+EAH++ +A+     +    R
Sbjct: 170  TRTGRPDEERYIKVALELAEQQQLPVVATNDVCFLQAEDFEAHEIRVAIHDGFTLDDPKR 229

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  T   Y ++  EM  +F+D+P ALENTV IA+RC+  +++       +   +     
Sbjct: 230  PKLYTSQQYFRSEQEMCDLFADVPSALENTVLIAQRCNVTIRLGE-----YFLPQFPTGD 284

Query: 305  KEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  +A  GLE R   +      +     +Y +RL  EL+VI +M F GYFLIV 
Sbjct: 285  LSTEDYLVKRAKDGLEERLKVMFPDEKVRTERRPEYDERLQVELDVINQMGFPGYFLIVM 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 345  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D RD VI +V   YGH  V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 405  FCMDGRDRVIDHVAEMYGHGAVSQIITFGTMAAKAVIRDVGRVLGQPYGFVDRISKLVPP 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + + +E   AD  V  ++++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 465  DPGMTL-AKAFEAEPKLQEIYDADEEVRAIIDMARKLEGVTRNAGKHAGGVVISPTLITD 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R  K      
Sbjct: 524  FSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINARMEKEGKPLV 583

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP DD +++ +L    T  +FQLES GM+  ++ ++PDC EDIIALV+L+RPGP+ 
Sbjct: 584  DINAIPLDDQQSFDVLLNAETTAVFQLESRGMKDLIKRLKPDCFEDIIALVALFRPGPLQ 643

Query: 657  NIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V       +   +         H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 644  SGMVDNFIDRKHGREEVSYPDANYQHESLKPILEPTYGIILYQEQVMQIAQVLAGYTLGG 703

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 704  ADLLRRAMGKKKPEEMAKQRSVFEEGAVKNGVDGGLAMKIFDLVEKFAGYGFNKSHSAAY 763

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+K HYP EF+AA MT EMDN +KI     +  +  ++++PP +NT    F 
Sbjct: 764  ALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGLYDECMRMGLKVVPPDINTGKHHFS 823

Query: 830  VGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V +N  I Y + AIKGVG      ++EA   D  F +L D C+RVD KK+NRR  ESL+ 
Sbjct: 824  VNENGEIVYGIGAIKGVGEGPIAALVEAREKDGIFKNLFDLCARVDLKKINRRTFESLIK 883

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946
            +GA D  G  R  L Q+L++  + +    K+      ++F     T  + + +    +  
Sbjct: 884  SGAFDKLGPHRAALQQNLEDALRASDQHAKDEALGQVDMFGVLTETNEEVENSYANIAPW 943

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                  + E+  LG Y S HP+  Y   L        +E V   RG     + +V+S + 
Sbjct: 944  TEKTILDGERETLGLYLSSHPVTRYLKELAHYSPVRLKELVPNYRGQMSTASGLVMSTRV 1003

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T+KG+ IG  T  + +   +   F
Sbjct: 1004 AVTKKGNHIGIATIDDRSGRLDLTLF 1029


>gi|269798464|ref|YP_003312364.1| DNA polymerase III subunit alpha [Veillonella parvula DSM 2008]
 gi|269095093|gb|ACZ25084.1| DNA polymerase III, alpha subunit [Veillonella parvula DSM 2008]
          Length = 1135

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1031 (35%), Positives = 600/1031 (58%), Gaps = 27/1031 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ +SLL+G   L +++ +     QPA+AITD  N+++A+ F ++  A G++PI
Sbjct: 4    FVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +   +              +  ++LL  T EGY+ L+++VS+           R
Sbjct: 64   IGCEVYVTENNRFDRPE--GRSRERLKHLILLAETMEGYRNLVKIVSKASTEGMLY-RPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 L++  ++G+I L+    G I +    ++ + A++ +  + + +G D  ++ +Q H
Sbjct: 121  ADRDLLRQY-SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEIQNH 179

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +  + + ++++L+  + L +VA+N+  ++ +ED +A D+ + ++     ++ DR + 
Sbjct: 180  GLPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDRLKF 239

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + YLK+  EM  +F  +P A+ENT++IA RC+         LP F   E +      
Sbjct: 240  PNDEFYLKSGDEMAELFGHIPGAIENTLKIAERCNVEFNFDEHHLPHFDVPEGE----TS 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR            +     G  +++ ++RLD+EL+VI  M F  YFLIV D++++A
Sbjct: 296  KTYLRKVCER-------EIPRLYGETSEELQKRLDYELDVIGTMGFEDYFLIVWDYVRYA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++R
Sbjct: 349  REHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFCYEKR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             + I YV  KYG  RV+QIITFG+  A+A +RDVGR L +P ++V+R+ K+IPN+    +
Sbjct: 409  GQAIEYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELGITL 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                       +    ADP+V  L +  +KLEG+ R++STHAAG+VI   PL   VP+  
Sbjct: 469  DKAL--QGKELKALYEADPNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHVPVQN 526

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
                   VTQ++   IE+ GL+K DFLGL+TLT++  +L  +   RG+ +DL  IP DD 
Sbjct: 527  ANDEGF-VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDDK 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664
                LLT   T G+FQLES G+ + +  ++P+  ED+I LV+LYRPGP+ + +   + +R
Sbjct: 586  AACDLLTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFIDR 645

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++GK+++  +HP+++P+LK+T GVI+YQEQVMQIA  + G+SL +AD++RRAMGKK +  
Sbjct: 646  RHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKESV 705

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +  Q+E FI G+ KNGI +++A  +F+LL  FA YGFNKSH+AAYA I+YQTA++K HY 
Sbjct: 706  LKAQRESFIQGSVKNGIDESVANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKAHYF 765

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EF+AA+MT  M N++K+  +    ++ N++++ P +N     F V D+ I + L  IK 
Sbjct: 766  PEFMAATMTSFMQNMQKLTYYINSCKKHNVKVLGPDINYSERSFAVQDDAIRFGLGGIKN 825

Query: 845  VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG      ++        +  + DFC RVD+K +N+R+LESL+  G++D F  +R QLL 
Sbjct: 826  VGDNAIDRLIRERNEHGLYTDIVDFCKRVDNKVVNKRLLESLIRCGSMDGFKENRNQLLH 885

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
              ++ Q      +K+      N+F   +    D I +      +   + ++E+   GFY 
Sbjct: 886  MYESAQAVGAKEQKDAAMGTMNLFGDMEEAV-DFIPVPNVEDLSEDDKLKDEKEYTGFYI 944

Query: 964  SGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            +GHPL  Y   L  +  +    E+     G  I    ++ +K  + T++   +  +   +
Sbjct: 945  TGHPLQGYAKELEGLFELGALAENPEQYDGQTITFGGLIENKSDRMTKRNEVMSILRIED 1004

Query: 1023 PAKEYEANFFP 1033
             +       FP
Sbjct: 1005 YSGAANVVAFP 1015


>gi|149907538|ref|ZP_01896285.1| DNA polymerase III subunit alpha [Moritella sp. PE36]
 gi|149809208|gb|EDM69137.1| DNA polymerase III subunit alpha [Moritella sp. PE36]
          Length = 1159

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1048 (37%), Positives = 584/1048 (55%), Gaps = 38/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL +HS +S+++  + +  +  ++     PAIA+TD  N+ + ++F      
Sbjct: 1    MAE-PRFIHLHLHSEFSMVDSLVRMKRLAPRLQELNMPAIALTDQTNMCALVKFYGAMQR 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG    +          Q +        + +L    +GY  +  L+S+ Y    
Sbjct: 60   AGVKPIIGADFWV----------QSEEYPEEQFKLTVLAKDNKGYNNITVLISKAYSRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I  +WL E   EG+I+L+G  +G I +A    +  +A + L  ++  F D  Y+
Sbjct: 110  VDGRAIIDKAWLAE-HAEGVILLSGARNGDIGKALLKGNDALARQCLTFYQAHFPDSYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V  A  H+LP+VATN+ +FL  ++++AH++ +++     +  K
Sbjct: 169  ELIRTGRQDEEAYLHMAVDFASQHQLPVVATNDVVFLHADEFDAHEIRVSIHDGYTLEDK 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  + + YL++  EM  +F+D+PEAL N+VEIA+RC+  +++               
Sbjct: 229  RRPRLYSKEQYLRSEDEMCELFADIPEALANSVEIAKRCNATVRLGEYF-----LPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +    + L   +  GL      L      +      Y  RL+ EL VI  M F GYFLI
Sbjct: 284  GELSTADFLVKVSEDGLVERLDFLFPDPAERERQRPAYEDRLEIELKVINDMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNNIPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KLI
Sbjct: 404  VDFCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   ++      + R  E    D  V  L+++++ LEG+ R+A  HA G+VI    +
Sbjct: 464  PGDPGMTLAKAW-DVEPRLDEMYQGDEEVRALVDMARILEGVIRNAGKHAGGVVISPTVI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-----DFLAQRGV 594
            +   P+Y D   + PVTQF+   +E+AGL+KFDFLGL+TLT++Q +L       + Q   
Sbjct: 523  TDFAPLYCDDSGNNPVTQFDKNDVEEAGLVKFDFLGLRTLTIIQWALDMANPHLVKQGKK 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            ++ +  I   D   + LL    T  +FQLES GM+  +  ++PD  ED+IALV+L+RPGP
Sbjct: 583  EIRIESIDITDRRCFDLLQRSETTAVFQLESRGMKDLIRRLKPDSFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAQYQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM+KQ+  F  GA  NG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMEKQRGTFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT WMKTHYP  F+AA M+ +MDN EK+     +  +  + ++PP VN     
Sbjct: 763  AYALVSYQTLWMKTHYPSYFMAAVMSADMDNTEKVVTLVDEVERMGLTLLPPDVNKGLFK 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D+ I Y + AIKGVG      I+ A      F  L DFC+RV+ KK+++R++E L
Sbjct: 823  FNVQEDHTIIYGIGAIKGVGEGPIDAIIAARESGGEFTDLFDFCNRVNLKKISKRIMEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            ++AGALD  G  R  L  +L    K A            ++F          +       
Sbjct: 883  IYAGALDKLGPHRAALHATLPEAMKAAAQHAMAEAYGQSDLFGILTTEPEEIESKFADVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 V  E E+  LG Y +GHP++ Y   +++      ++   T RG  +    +V+S 
Sbjct: 943  EWPDKVWLEGERETLGLYLTGHPINQYIKEVKRYSTNRLKDVKPTERGKVVTAVGLVISA 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            Q K T+KG+R+G +   + +      FF
Sbjct: 1003 QVKVTKKGTRMGILEIDDKSGRLSVMFF 1030


>gi|161612604|ref|YP_001586569.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Paratyphi B str. SPB7]
 gi|161361968|gb|ABX65736.1| hypothetical protein SPAB_00295 [Salmonella enterica subsp. enterica
            serovar Paratyphi B str. SPB7]
          Length = 1144

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1032 (39%), Positives = 597/1032 (57%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K A+   PA+AITD  NL   ++F      AGI+PI+G   ++  + 
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNE- 59

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                          +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 60   ---------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-K 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+++GG  G + R     +  + E+ +  ++  F DR ++ L R    D        
Sbjct: 110  EGLILISGGRMGDVGRCLLRGNQALVEECVAFYETHFPDRYFLELIRTGRQDEETYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEALENTVEIA+RC+  +++           +        E+ L  K+  GL
Sbjct: 230  MCELFSDIPEALENTVEIAKRCNVTVRLGEYF-----LPQFPTGDMTTEDYLVKKSKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YNNR 664
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V       +   
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D   I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I++A      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG     A +V++ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|163857430|ref|YP_001631728.1| DNA polymerase III subunit alpha [Bordetella petrii DSM 12804]
 gi|163261158|emb|CAP43460.1| DNA polymerase III, alpha subunit [Bordetella petrii]
          Length = 1163

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1055 (38%), Positives = 614/1055 (58%), Gaps = 45/1055 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +++ +  +P+FVHL+VHS +S+++G + + +++ ++A   QPA+A+TD +N+F  ++F +
Sbjct: 1    MSEAVNPTPAFVHLRVHSEFSVVDGIVRIPDLIKRVAQLGQPAVALTDLSNIFGLIKFYK 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  AG++PI GC + +   D+ +              ++LLV   +GY  L EL++R +
Sbjct: 61   GARGAGVKPIAGCDVWLTNDDDPEKP----------FRLLLLVRNHQGYLNLCELLTRSF 110

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            L +QG+    I   WLQ  G +GLI+L+GG +G I  A    ++  A      +  LF  
Sbjct: 111  LENQGRGRAEIRREWLQ--GRQGLIVLSGGRAGDIGHALDAGNAVTALALARQWGALFPG 168

Query: 181  RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQR     D       ++LA    LP+VAT+   FL   +Y+AH+  + +A   +
Sbjct: 169  AFYIELQRAGADGDEAYTQAAMRLAAEAGLPVVATHPVQFLDASEYQAHEARVCIAQGEI 228

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R  R T D YL +  EM   F+D+P AL NTVEIA+RC+  L +  P LP F   
Sbjct: 229  LADPRRVRRFTKDQYLLSTEEMARRFADVPSALANTVEIAKRCNLTLVLGKPRLPNFPTP 288

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +   +    ++ L   +  GLE RL         +      Y +RL +E   I +M F G
Sbjct: 289  DGISL----DDYLVQLSEEGLEKRLEFLFPDPAERDAKRAQYYERLRWECKTIIQMGFPG 344

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLNP+R+SM
Sbjct: 345  YFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSM 404

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQD R+ VI YV+ KYG E V+QI TFG+L AKA +RD GR L MPY   D L
Sbjct: 405  PDFDIDFCQDNRERVIDYVKMKYGREAVSQIATFGTLGAKAVVRDAGRVLDMPYLFCDGL 464

Query: 476  CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP +PA P S  + + D+  F+E    +  V  L+++++ LEGL R+   HA G++I
Sbjct: 465  SKLIPFNPADPWSLDRTLKDEPAFKERYEQEEEVRALVDLARPLEGLTRNIGMHAGGVLI 524

Query: 535  GDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA--- 590
                L+   P+Y    + +  V+QF+   +E AGL+KFDFLGL+ LT+L  ++ ++    
Sbjct: 525  APGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRRFN 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            +     D+  +P DD   Y +L    T  +FQLES GM++ L+ ++P+  EDIIA+++LY
Sbjct: 585  ESKRDFDIMALPLDDPAAYKVLCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALY 644

Query: 651  RPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+++ +   + NRK+G+  +   HP ++  LK T GVI+YQEQVM I+Q++ GYSL 
Sbjct: 645  RPGPLESGMVDDFVNRKHGRATVDYFHPDLEATLKSTYGVIVYQEQVMLISQIIGGYSLG 704

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM K +E F  GA + G    +AV +F+L+ KFA YGFNKSH+AA
Sbjct: 705  GADLLRRAMGKKKPEEMAKHRELFEKGAKEKGHDPNLAVKLFDLMEKFAGYGFNKSHSAA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+I+YQTAW+K ++P EFLAA+++ +MD+ +K++ FC+DA+   + ++PP VN     F
Sbjct: 765  YALIAYQTAWLKAYHPTEFLAATISSDMDDTDKVQVFCRDAQDNGVLVLPPDVNASGYRF 824

Query: 829  KVGDNR----------IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKL 877
            +   +           + Y L A+KG G      I+ A  AD PF +L DFC RV+   +
Sbjct: 825  EPVADEHTREGRPPRTMRYGLGAVKGTGQGAVEEILRAREADGPFANLFDFCRRVNKHAV 884

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NRR +E+L+ AGA D    +R  +L S+    + A+  +  R+    ++F  + G     
Sbjct: 885  NRRTIEALIKAGAFDTIEPNRAAMLASVGTAMEAAE--QAARSANQVSLFGDDSGDVVAG 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
              L K +  N   +   E+  LGFYFSGH  D ++  +R++                  +
Sbjct: 943  -ELSKVAPWNLHTKLTEEKSALGFYFSGHLFDHWRDEVRRIVPMPLARVEPQRDLQ--WM 999

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++   +   TR+G  + +    +   + E + F
Sbjct: 1000 CGVLAGVRTMMTRRGK-MVFAVLDDGTAQVEISVF 1033


>gi|77164364|ref|YP_342889.1| DNA polymerase III, alpha subunit [Nitrosococcus oceani ATCC 19707]
 gi|254433438|ref|ZP_05046946.1| DNA polymerase III, alpha subunit subfamily, putative [Nitrosococcus
            oceani AFC27]
 gi|76882678|gb|ABA57359.1| DNA polymerase III, alpha subunit [Nitrosococcus oceani ATCC 19707]
 gi|207089771|gb|EDZ67042.1| DNA polymerase III, alpha subunit subfamily, putative [Nitrosococcus
            oceani AFC27]
          Length = 1158

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 434/1042 (41%), Positives = 618/1042 (59%), Gaps = 30/1042 (2%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +PSFVHL++H+ YSL++  + +  ++   +    PA+A+TD +N+F+ ++F + A AAG+
Sbjct: 2    APSFVHLRLHTEYSLVDSLVRIRPLIQATSEAGMPAVAVTDQSNVFAMIKFYRAAQAAGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIG  + +           G      V    LL     GY+ L  L+SR Y   Q + 
Sbjct: 62   KPIIGADIFL----------VGSGEHSRVSRFTLLCQNELGYRNLSSLLSRAYREGQYQG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+   WLQ +  +GLI+L+GG  G + +A    +   A K L  ++ LF  R Y+ L 
Sbjct: 112  IPRLQWDWLQNL-NDGLIILSGGREGDVGQALLAGNDIQAGKLLERWQALFPGRYYLELH 170

Query: 188  RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R     +       + LA   + P+VATN+  FL  +D+EAH+  + +     ++   RP
Sbjct: 171  RTGREGEEDYLHAAIALALARDTPVVATNDVRFLRPQDFEAHEARVCIHEGRTLNDPRRP 230

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  +   YL+  SEM  +F+DLPEALENTVEIARRC+  L +    LP F   E   I+ 
Sbjct: 231  RHYSEQQYLRTPSEMTELFADLPEALENTVEIARRCNLELTLGKHYLPNFPVPEDLSIEA 290

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                E R      L     + A  +      Y  RL  EL VI +M F GYFLIVADFI+
Sbjct: 291  FLAAEARRGLEQRLVKLYPREAKRETEQP-AYEARLAEELAVINQMGFPGYFLIVADFIR 349

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAKKN IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+S+PDFDIDFC +
Sbjct: 350  WAKKNGIPVGPGRGSGAGSLVAYALQITDLDPLAFDLLFERFLNPERVSLPDFDIDFCME 409

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRD VI YV + YG + V+QIIT+GS+ AKA +RDVGR L  PY  VD++ KLIP D   
Sbjct: 410  RRDRVIDYVSHYYGRDHVSQIITYGSMAAKAVVRDVGRVLGHPYGFVDQIAKLIPFDLKM 469

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+A+    R     +  V  L+++++KLEGL R+A  HA G+VI  + L++ VP 
Sbjct: 470  TLD-KALAESEGLRSRYEGEEEVRFLIDLARKLEGLIRNAGKHAGGVVIAPKKLTEYVPY 528

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSL 600
            Y +  +   VTQF+   IE  GL+KFDFLGL+TLT+L  +L  + ++  +      DL+L
Sbjct: 529  YCEQGASGVVTQFDKDDIETIGLVKFDFLGLRTLTILDWALQAINRQRTQQGEALLDLAL 588

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV- 659
            +P DD ++Y LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP+ + + 
Sbjct: 589  LPMDDPKSYALLKRCATTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMV 648

Query: 660  -VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y NRK+G+ ++   HP ++P+LK T GVI+YQEQVMQIAQ+L+GY+L EAD+LRRAMG
Sbjct: 649  DDYINRKHGRAQVNYPHPALEPILKPTYGVIVYQEQVMQIAQVLAGYTLGEADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM +Q+  F +GA    + +  A  IF+L+ KFA+YGFNKSH+AAYAVI+YQTA+
Sbjct: 709  KKKPEEMAEQRAIFTAGAKAREVDEKTATAIFDLMEKFAEYGFNKSHSAAYAVIAYQTAY 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYY 837
            +K HYP  ++AA ++ +MDN EK+K F ++    N+ ++PP VN     F   G+  I Y
Sbjct: 769  LKAHYPASYMAAVLSADMDNTEKVKAFVEECWAMNLDLLPPDVNASNYSFSAQGETAIRY 828

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L AIKGVG      I++      P+  L +FC R+D +K++RRVLE+L+ AGALD  G 
Sbjct: 829  GLGAIKGVGAAALEGIIKVRERHGPYQDLFEFCRRIDLRKVSRRVLEALIRAGALDSLGV 888

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENE 955
             R  L  SL+     A+   +N +    ++F  +  +   +     +    +   R   E
Sbjct: 889  ERATLEASLETALALAEQHCRNASLGQNDLFGLDLVSEEGEAGNYVEVREWDKEQRLALE 948

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-----GNNIRLAAMVVSKQQKKTR 1010
            +  LG Y SGHP+D YK  L+++      E +            I +A +V S +  K R
Sbjct: 949  KETLGLYLSGHPIDCYKQELKQIAPCRIVELIDRANNRQSRNQQIVIAGLVGSVRTNKAR 1008

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G R  +VT  + +   E   F
Sbjct: 1009 QGGRNAFVTLEDGSARLEIKAF 1030


>gi|152967131|ref|YP_001362915.1| DNA polymerase III subunit alpha [Kineococcus radiotolerans SRS30216]
 gi|151361648|gb|ABS04651.1| DNA polymerase III, alpha subunit [Kineococcus radiotolerans
            SRS30216]
          Length = 1180

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1069 (34%), Positives = 564/1069 (52%), Gaps = 51/1069 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  + SF HL VH+ YS+L+GA  ++++    A    PA+A TD   +F A +F + A  
Sbjct: 1    MASADSFAHLHVHTEYSMLDGAAKVDDLFRTAAEMGMPAVATTDHGFVFGAYDFWKTAKK 60

Query: 65   AGIQPIIGCQLDIDM------------QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
             G++PIIG +  +               D    +    +   +   + +L     G   L
Sbjct: 61   HGVKPIIGVEAYLTPGTARQDKTRVKWGDPNGRSGDDVSGAGSYTHMTMLAQNTAGMHNL 120

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             ++ S   L +      R+    L +  + GLI  TG  SG +           A K   
Sbjct: 121  FKMSSLASL-EGFLYKPRMDRELLSQY-SAGLIATTGCPSGEVQTRLRLGQYDEARKAAA 178

Query: 173  TFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             ++ +FG +  +  L  H    +R  +  +++LA   +LPL+ATN+  +    D +AH  
Sbjct: 179  DYRDIFGAENFFCELMDHGLDIERRVQDDLLKLAKDLDLPLLATNDLHYTHAGDSQAHAA 238

Query: 231  LMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
            L+ V   + ++   R +    + YLK+ +EM  ++ D PEA +NT+ IA RC        
Sbjct: 239  LLCVQSGSTLADPKRFKFDADEFYLKSPAEMRHVWRDHPEACDNTLLIAERCEVEFTEST 298

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                 ++ +      ++EE+    +  +GL  R   G         D R++ D+E+ VI 
Sbjct: 299  GA---YMPRFPCPEGEDEESWFVKEVWSGLAQRYPAG------IPDDVRKQADYEIEVIT 349

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
               ++GYFL+VADFI W+K+N I VGPGRGSGAGS+ AYA+ ITD+DPLR  L FERFLN
Sbjct: 350  SKGYAGYFLVVADFINWSKENGIRVGPGRGSGAGSMAAYAMKITDLDPLRHGLFFERFLN 409

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+RMSMPDFD+DF + RR EVI+YV  KYG +RVAQI+T+G+++AK A++D  R L  P+
Sbjct: 410  PERMSMPDFDVDFDERRRGEVIQYVVEKYGTDRVAQIVTYGTIKAKQAVKDSSRVLGFPF 469

Query: 470  SQVDRLCK-LIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            S  DR+ K + P      +          +  ++   FRE   +DP V ++++ ++ LEG
Sbjct: 470  SMGDRITKTMPPAVMGKDIPLSGIFDPNHKRYSEAGEFRELYKSDPEVVKVVDTARGLEG 529

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R    HAAG+++   PL  L+P+ +       +TQF+    E  GL+K DFLGL+ LT
Sbjct: 530  LKRQWGVHAAGVIMSSDPLIDLIPIMKREADGAIITQFDYPTCETLGLVKMDFLGLRNLT 589

Query: 581  LLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            +L  +L  +       VDL  +  DD  T+ LL    TLG+FQ +   MR  L  M+PD 
Sbjct: 590  ILDDALKNVVANGKEAVDLDALELDDQATFDLLGRGDTLGVFQFDGGPMRSLLRLMRPDN 649

Query: 640  IEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQE 693
             EDI A+ +LYRPGP+   +   Y  RKNG+E I  IHP ++  LK     T G+I+YQE
Sbjct: 650  FEDISAVGALYRPGPMGAGSHTAYARRKNGQEPITPIHPELEEPLKEILGTTYGLIVYQE 709

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVM IAQ ++GYSL  AD+LRRAMGKK +E +D +   F  G   NG SK     ++++L
Sbjct: 710  QVMSIAQKVAGYSLGSADLLRRAMGKKKREVLDAEYVGFEKGMLDNGFSKECVKALWDIL 769

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              F+DY FNK+H+AAY ++SY TA++K +YP E++AA +T   D+ +K   +  + R+  
Sbjct: 770  VPFSDYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAAVLTSVRDDKDKSALYLNECRRMG 829

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRV 872
            IQ++PP VN    +F      I + L AI+ VG      ++EA A+   ++S  DF ++V
Sbjct: 830  IQVLPPDVNESSANFTAVGADIRFGLTAIRNVGANVVDAVVEARAEKGRYESFTDFLTKV 889

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
             +   N+R +ESL+ AGA D  G+ R  L+   ++       V++N      ++FA   G
Sbjct: 890  PAVVCNKRTIESLIKAGAFDSLGHRRRALVAKHEDAVDAVVDVKRNEAIGQFDLFAGLGG 949

Query: 933  TFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                      + +        +    +E+++LG Y S HPL   + +L           +
Sbjct: 950  DDDGGAGGFHVEIPDLPEWEKAELLAHERQMLGLYVSDHPLFGLERLLANASDVPIATLL 1009

Query: 988  A---TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   G+NI +A M+   Q+K T++G+    VT  + A   E  FFP
Sbjct: 1010 EDESRPDGSNITIAGMITGLQRKTTKQGNYWAIVTVEDLAGAIECLFFP 1058


>gi|317121217|ref|YP_004101220.1| DNA polymerase III catalytic subunit, DnaE type [Thermaerobacter
           marianensis DSM 12885]
 gi|315591197|gb|ADU50493.1| DNA polymerase III catalytic subunit, DnaE type [Thermaerobacter
           marianensis DSM 12885]
          Length = 1245

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/950 (39%), Positives = 559/950 (58%), Gaps = 50/950 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL VHS YSLL+GA  +  +  + A    PA+A+TD   ++ A++F +     GI+PI
Sbjct: 4   FVHLHVHSEYSLLDGAARVGELAARAAELGMPALALTDHGVMYGAIDFYKACKKHGIKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IGC+L +  +       +          ++ L     GY+ LI++VSR Y  +      R
Sbjct: 64  IGCELYLARRTRHDREPK---VDDQSYHLLALAQNETGYRNLIKIVSRAY-AEGFYYKPR 119

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                L E  +EGLI+ +G     I R       + A K +  + ++FGDR Y  +Q H 
Sbjct: 120 ADKELLAE-HSEGLIVTSGCIGSEIPRLLLEGREEEALKAVRWYLEVFGDRFYFEIQDHG 178

Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             +  R  +++++LA   ++P+VATN+  +L ++D  AH+VL+ +     +    R R  
Sbjct: 179 IPEERRAYARILELARRFDVPVVATNDVHYLHKDDAAAHEVLLCIQTGKTLDDPHRMRFD 238

Query: 250 -PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             + YLK+  EM ++F D+PEAL NTV++A RC    +    +LP +   E  D      
Sbjct: 239 GAEFYLKSPEEMAALFRDVPEALANTVQLAERCQLEFEFGRFLLPHYEVPEGHD----AA 294

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
           + LR      L  R             +   RL+ EL VI RM +  YFLIV DF+ +A+
Sbjct: 295 SYLRYLCETKLPERYPDAGS-------EVWDRLNHELAVITRMGYPAYFLIVWDFVDYAR 347

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
           +N I VGPGRGS AGS+ AY L ITDIDPLR++LLFERFLNP+R++MPD DIDF   RRD
Sbjct: 348 RNGIAVGPGRGSAAGSLVAYVLGITDIDPLRYNLLFERFLNPERVTMPDIDIDFDDHRRD 407

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
           EVI YV  KYG +RVAQIITFG + A+A +RDVGR + +PY +VD++ K++P      + 
Sbjct: 408 EVIDYVVRKYGRDRVAQIITFGRMLARAVIRDVGRVMGLPYGEVDKIAKMVPAQLGITLD 467

Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            QA+      ++A    P V +L+++++KLEG+ RHAS HAAG+VIG  PL + VP+ R 
Sbjct: 468 -QALEASPELKQAYEQQPVVRQLVDMARKLEGMPRHASVHAAGVVIGRDPLMEHVPLQR- 525

Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL---------- 598
           ++    VTQF M  +E+ GL+K DFLGL+TL ++Q++   +   G +  L          
Sbjct: 526 MQDGSTVTQFPMTTLEELGLLKMDFLGLRTLHVIQETEAIINTTGARDVLAGESGGGGAE 585

Query: 599 ----------SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
                       IP DD  T+  ++   T  +FQ+ESSG  Q L  ++P  IED+IA V+
Sbjct: 586 EPGAAPRFRVRDIPLDDPATFEAMSRGDTAAMFQVESSGFTQMLRSLRPSSIEDLIAAVA 645

Query: 649 LYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
           L+RPGP+ + +   +  RK+G+  +   HP ++P+LKET G I+YQEQVMQIA +++G++
Sbjct: 646 LFRPGPLGSGMVDDFIKRKHGQVPVEYPHPWLEPILKETYGTIVYQEQVMQIASVMAGFT 705

Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
           L EAD+LRRAMGKK  EEM KQ+E+F++GA   G+ + +A +IF+L+  FA YGFNKSH+
Sbjct: 706 LGEADLLRRAMGKKKPEEMQKQREKFLAGAEAKGVDRKLAEHIFDLMEYFAGYGFNKSHS 765

Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
           AAY  ++Y TA++KTHYP  ++AA+++  M N +++ ++  + R+  I ++PP +N    
Sbjct: 766 AAYGYLAYVTAYLKTHYPAPYMAATLSSVMSNSDRVAEYIGECRRLGIPVLPPDINESQA 825

Query: 827 DFKV-------GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878
            F V       G   I + LAA+K VG      I+ A     PF SL+DFC RVD +++N
Sbjct: 826 LFTVVPDPRAPGGQAIRFGLAAVKNVGFGAIESIVSAREQGGPFRSLDDFCRRVDLRQVN 885

Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
           RR LESL+ AGA D  G+ R +LL  L+ + + AQ  +K R     ++  
Sbjct: 886 RRALESLIKAGAFDSLGHPRARLLAGLEEVMERAQRWQKERETGQVSLLD 935



 Score =  141 bits (355), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 38/99 (38%)

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             +   L        + +   E+ VLG Y SGHPL  Y+  L +       +      G  
Sbjct: 1025 DEATELPPVEEWPPNRKLAMEKEVLGLYLSGHPLAHYQRELARRVTATTRQLAEREDGAR 1084

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +++  +V   ++  TR G  + +V   +     E   FP
Sbjct: 1085 VQVGGLVQGVRRITTRSGELMAFVQLEDLEGSVEVVVFP 1123


>gi|268610019|ref|ZP_06143746.1| DNA polymerase III DnaE [Ruminococcus flavefaciens FD-1]
          Length = 1135

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1034 (35%), Positives = 592/1034 (57%), Gaps = 28/1034 (2%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S  FVHL +H+ YSLL+GA  L  +++ I +  Q A+AITD  N++ A+EF  +A  AG
Sbjct: 2    NSSDFVHLHLHTEYSLLDGACRLKPLMEHIKSLGQTAVAITDHGNMYGAVEFWNEAKNAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PIIGC++ +  +       +  +   +   ++LL    EGY+ L++LVS   + +   
Sbjct: 62   IKPIIGCEVYVARRTRHDRDPKLDS---SPYHLILLCKNNEGYKNLVKLVSIASI-EGFY 117

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVN 185
               R+ L  L++   +GLI L+   +G I R    ++ + A+   +T+  +FG+   ++ 
Sbjct: 118  NKPRVDLELLKKYH-DGLICLSACLAGEIPRLLNNSTYEEAKAVAMTYLDIFGEGNYFIE 176

Query: 186  LQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    +R     + +L+    +PL ATN+  ++S++D E  +VL+ +    ++ + +
Sbjct: 177  IQDHGIAAERKILPHLYRLSEETGIPLAATNDCHYISKDDAEMQNVLICIQTGKILGEPN 236

Query: 245  -RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                 T + Y+K+  EM  +F+   EAL+NT  IA  C+   +     LP+F  +   D 
Sbjct: 237  GMSFETDEFYVKSTEEMAELFAGHEEALKNTARIAEMCNVEFEFGNIKLPKFTVEGVTDN 296

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                E   R+    G+  R  +   +         +RL++EL+VI RM ++ YFLIV DF
Sbjct: 297  ----EAYFRDLCRKGMYERYGRSPDS------KVEERLEYELSVITRMGYTDYFLIVWDF 346

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++A+ +N+PVGPGRGSGAGS+ AY + IT IDP++F+LLFERFLNP+R+SMPDFDIDFC
Sbjct: 347  IRYARDHNVPVGPGRGSGAGSLCAYCIGITGIDPMKFNLLFERFLNPERVSMPDFDIDFC 406

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + R  V  YV  KYG + V++II F +L+A+AA+RD GR + +PY+  D++ K I    
Sbjct: 407  IEGRQSVKDYVVRKYGKDYVSEIIAFDTLKARAAVRDTGRVMSLPYALCDKVAKQIDM-- 464

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                   A+ +     +   +D SV +L++ ++KLEG+ RHASTHAAG+VI   PLS LV
Sbjct: 465  -RNTLDDALKESEELAQLYKSDRSVKKLIDTAKKLEGMPRHASTHAAGVVISAVPLSDLV 523

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+ ++   D  VTQ+ M  +E  GL+K DFLGL+ LT+++ +++ + +     D+  I F
Sbjct: 524  PLQKN--DDTVVTQYTMTVLESLGLLKMDFLGLRNLTIIRDAVNEIRRSEPDFDIDKIDF 581

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
             D   Y +L+   T G+FQ ES+GM   L  + P+ +ED+I ++SLYRPGP+ +I VY  
Sbjct: 582  ADQNVYKMLSDGDTCGVFQFESAGMTARLMELCPERLEDLIVILSLYRPGPMKSIPVYIE 641

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             K   + I   HP++  +L +T G ++YQEQVM+I + ++GYS   AD++RRAM KK  +
Sbjct: 642  NKKHPDSIKYKHPILKDILADTYGCMVYQEQVMEICRKMAGYSYGHADIVRRAMAKKKHD 701

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M K++E+F+SG+ +NG+S+T+A  +F+ +  FA Y FNKSHAAAYA ++YQTA++K HY
Sbjct: 702  VMLKEREKFVSGSVENGVSETVANEVFDEMVSFASYAFNKSHAAAYAYLAYQTAYLKYHY 761

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
               ++AA M+  M + +K+ ++    R   I++  P VN     F   D  +Y+ L AIK
Sbjct: 762  RGIYMAALMSSVMGSSDKLAEYINSCRDNGIKVCCPDVNKSFRGFTFKDGVMYFGLLAIK 821

Query: 844  GVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
              G+  A   I++      F  L+DFC R++ ++LN++ LE+++ AGA D  G +R Q+L
Sbjct: 822  NAGSGLADKLILDRQQHGDFKGLQDFCERIEGRELNKKALENMIKAGAFDGLGLNRRQML 881

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             S +   + A   ++   +    +F +E+      + +           F  E+   G Y
Sbjct: 882  DSYETFIEMAGEGKRGVIDGQLGLFRNEESHEMG-VKISYKPEFEKKRLFAMEKEATGMY 940

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVA---TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             SG PLD YK I   M         +    + G N++L   V S +   T++G ++ +  
Sbjct: 941  LSGDPLDSYKWISDLMHTDTVSGLSSPDTAVDGKNVKLLCTVESTKVHITKRGDKMCFAE 1000

Query: 1020 FSEPAKEYEANFFP 1033
             S+     E   FP
Sbjct: 1001 VSDGTGVMECVVFP 1014


>gi|161504650|ref|YP_001571762.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. arizonae
            serovar 62:z4,z23:-- str. RSK2980]
 gi|160865997|gb|ABX22620.1| hypothetical protein SARI_02771 [Salmonella enterica subsp. arizonae
            serovar 62:z4,z23:--]
          Length = 1144

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1032 (39%), Positives = 597/1032 (57%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K A+   PA+AITD  NL   ++F      AGI+PI+G   ++  + 
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNE- 59

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                          +  + +L S   GYQ L  L+S+ Y    G     +   WL E+  
Sbjct: 60   ---------LLGDELTHLTVLASDNTGYQNLTLLISKAYQRGYGASGPIVDRDWLIEL-K 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSIDE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEALENTVEIA+RC+  +++           +        E+ L  K+  GL
Sbjct: 230  MCELFADIPEALENTVEIAKRCNVTVRLGEYF-----LPQFPTGDMTTEDYLVKKSKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDEEERKKRRPEYDERLNIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +
Sbjct: 524  QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YNNR 664
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V       +   
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  ELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D   I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I++A      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          +  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQPWPEQMVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG     A +V++ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|189502058|ref|YP_001957775.1| hypothetical protein Aasi_0650 [Candidatus Amoebophilus asiaticus
            5a2]
 gi|189497499|gb|ACE06046.1| hypothetical protein Aasi_0650 [Candidatus Amoebophilus asiaticus
            5a2]
          Length = 1148

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1037 (35%), Positives = 577/1037 (55%), Gaps = 35/1037 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL  H+ YSLL+G   ++ +  K       A+AITD  N+F    F  +A   GI+PI
Sbjct: 4    FTHLHCHTQYSLLDGTAKIDKLFGKAKQLGMQALAITDHGNMFGVPHFVAQAKKQGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC+  +    +            T    +LL     GY+ +++L S  +L +      R
Sbjct: 64   IGCEFYLAADMHNLKEK-------TRYHQLLLAKNEVGYKNIVKLCSISFL-EGYYYKPR 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L++  +EGLI  T   +G + +A      + AEK  L++  +FG+  Y+ LQRH 
Sbjct: 116  IDKELLKKY-SEGLIATTCCLAGEVPQAIMRKGEEEAEKVFLSWLNIFGEDYYIELQRHG 174

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              ++ +    +++ A  +++ ++ATN+  ++ ++D  A D+L+ +      +  +R R  
Sbjct: 175  LKEQDKCNEVLLKWAQKYQVKVIATNDVHYVEQQDSLAQDILLCLQTGKDYNDPNRMRFD 234

Query: 250  -PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                +LK+  EM+++F D+P+A+ NT EI  + +        +LP F   +    Q   +
Sbjct: 235  GDQFFLKSPQEMLTLFHDIPQAVSNTQEIIDKINTPSLERDILLPVFQIPQGFTSQ---D 291

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR+ A+ G +          G  + D   R+++EL VI +M F GYFLIV DFIQ AK
Sbjct: 292  SYLRHLAIEGAKK-------RFGAISADLEARINYELGVIQQMGFPGYFLIVQDFIQAAK 344

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               + VGPGRGS AGSV AY + ITDIDP+R++L FERFLNP+R+SMPD DIDF  + R 
Sbjct: 345  NLQVVVGPGRGSVAGSVVAYCIGITDIDPIRYNLFFERFLNPERVSMPDIDIDFDDEGRQ 404

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            +VI YV +KYG  +VA IITFGS+ AK+A+RDV R L +P  + + + KL+P      + 
Sbjct: 405  KVIEYVVDKYGKNQVAHIITFGSMAAKSAIRDVARVLGLPLERTNYIAKLVPEKLGITLP 464

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                         + ++    ++L +++ LEG  RH   HAAGI+I    L   +P+  D
Sbjct: 465  ESFEEVLELAELKKNSNTLEGKVLSLAETLEGSARHTGVHAAGIIIAPDDLLNHIPVKTD 524

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
              SDL VTQ++   +EK G++K DFLGLKTL++++ ++  + +  G K+DL  +P DD +
Sbjct: 525  KNSDLLVTQYDGSIVEKVGMLKMDFLGLKTLSIIKDAIALIEKLHGTKIDLEQLPLDDLK 584

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ L     T+  FQ ES GMRQ L+ +QP   E++IA+ +LYRPGP+  I  +  RK+G
Sbjct: 585  TFKLYQQGDTIATFQFESEGMRQWLKKLQPTEFEELIAMNALYRPGPMQFIPNFIARKHG 644

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +EKI   HPL+  +LK T G+++YQEQVMQ AQ+++GYSL  AD+LR+AMGKK  EEM K
Sbjct: 645  QEKIDYPHPLLVDILKNTYGIMVYQEQVMQTAQIIAGYSLGGADLLRKAMGKKQPEEMAK 704

Query: 728  QKERFISGASKNGI-SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            Q+E F+ GA +      T A+ IFE++ KFA YGFN++H+AAY+VI+YQTA++K HYP E
Sbjct: 705  QREIFVQGAQEKNNLPSTKAIEIFEVMEKFAQYGFNRAHSAAYSVIAYQTAYLKAHYPAE 764

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGV 845
            ++A+ +T   +++ KI  F ++  +  IQ++ P VN   V+F V     I + L AIKG 
Sbjct: 765  YMASVLTHNQNDIGKISFFMEECIRQGIQVLGPDVNESQVNFDVTPKQGIRFGLTAIKGA 824

Query: 846  GTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQ 903
            G     HI+     +  F  +  F  RVD + +N++ LESL  +GA D F G  R Q L 
Sbjct: 825  GEGAVSHIIAEREKNGHFTDIFSFVERVDLRMVNKKTLESLAMSGAFDGFTGCHRRQYLF 884

Query: 904  SLD-------NIQKYAQWVEKNRTNKHENIFAHEKG-TFSDKITLEKFSVENSSVRFENE 955
            + D          +Y   +++ + +  +++FA +    +  K  +      +   +   E
Sbjct: 885  AADGEHNLLVKAIQYGNQIKQEKASAQQSLFAMDDNFQYIQKPPIPTCEPYDKIEKLRME 944

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            + ++GFY SGHPLD ++  L        +  +   +   +RLA ++     K  ++G   
Sbjct: 945  KELVGFYISGHPLDQFRVELANFCDGHTQNILTFKQ-KEVRLAGIITECSIKYNKQGRPF 1003

Query: 1016 GWVTFSEPAKEYEANFF 1032
            G     +     +   F
Sbjct: 1004 GLFILEDYHGTLDLALF 1020


>gi|156975491|ref|YP_001446398.1| DNA polymerase III subunit alpha [Vibrio harveyi ATCC BAA-1116]
 gi|156527085|gb|ABU72171.1| hypothetical protein VIBHAR_03222 [Vibrio harveyi ATCC BAA-1116]
          Length = 1143

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1031 (39%), Positives = 600/1031 (58%), Gaps = 37/1031 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G   +  ++ K+A    PA+A+TD  NL   +++   A  +G++PIIG    +    
Sbjct: 1    MVDGINKVPPLVKKVAELGMPAMALTDFTNLCGLVKYYGTAHGSGVKPIIGADFKM---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q       +  + LL +  EGY+ L  L+S+ YL    +    +  +WL E+ +
Sbjct: 57   ------QSDEFGEELTQLTLLAANNEGYKNLTLLISKAYLRGHVQHQPVLDKAWLAEL-S 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+G  +G I +A    + +V +  +  + + F DR Y+ L R    D        
Sbjct: 110  EGLIVLSGAKNGEIGKALLKGNRKVVDSCVEFYNQYFPDRFYLELVRTGRPDEETYLHFA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            ++LA   ELP+VATN  +F+SE+ ++AH++ +A+     +    RP+  +P+ YL+   E
Sbjct: 170  IELAEELELPVVATNEVVFISEDLFDAHEIRVAIHDGYTLEDPRRPKNYSPEQYLRTEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEALEN+VEIA+RC+  +++                  EE + L  K+  GL
Sbjct: 230  MCELFADIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPTEGMEETDFLVMKSREGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +     +Y  RL  EL+VI +M F GYFLIV +FIQW+K N IPVGP
Sbjct: 285  EERLEFLFPDEEERKQRRPEYDDRLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V  
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+P DP   +       + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKA-FKAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
               E   AD  V  L+++ + LEG  R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  ALPELYDADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITDFAPIYADSEGHFPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L  +  R        V +  IP DD  ++ L
Sbjct: 524  QFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKDPVRIESIPLDDAASFRL 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584  LQNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             I        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  AISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA  NG+   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRATFEEGAIANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKMHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  + ++PP +N     F V  +  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINAGLYRFNVDENGAIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  L DFC+R+D KK+N+RV+E L++AGALD  G  R  L+
Sbjct: 824  GVGEGPIDAILEARNKGGHFIDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGF 961
             SL++  K A    +       ++F        + +    +       V  E E+  LG 
Sbjct: 884  ASLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVPAWPEKVWLEGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y +GHP++ Y   L K      +++  T R  ++ +A +V++ +   T++G+RIG +T  
Sbjct: 944  YLTGHPVNAYIKELNKYVSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTRIGIMTLD 1003

Query: 1022 EPAKEYEANFF 1032
            + +   E   F
Sbjct: 1004 DRSGRMEVMLF 1014


>gi|307822683|ref|ZP_07652914.1| DNA polymerase III, alpha subunit [Methylobacter tundripaludum SV96]
 gi|307736287|gb|EFO07133.1| DNA polymerase III, alpha subunit [Methylobacter tundripaludum SV96]
          Length = 1164

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1042 (40%), Positives = 617/1042 (59%), Gaps = 30/1042 (2%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+FVHL++H+ +SL++G + +  ++ ++A    PAIA+T+  NLFS ++F + A   GI+
Sbjct: 3    PAFVHLRLHTEFSLVDGIVKIKPLVKRLAELNMPAIAVTEHANLFSLVKFYKAALGQGIK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I G  + +   ++            T   + LLV+   GY  L EL+S+ Y   Q +  
Sbjct: 63   AIAGSDVLVFNPEDP----------ATPYRLTLLVNNHAGYITLTELISKAYQEGQHQGV 112

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +   W++     GLI L+G  SG I +A    +   A++    +  LF    Y+ LQR
Sbjct: 113  PMLRQEWIEANHN-GLIALSGAMSGCIGKALLAENHDAAKRLAEFWGALFEQSFYLELQR 171

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                +  R  +  V+LA    LP+VATN+  F+ ++D+ AH+V + +  S V+    RP+
Sbjct: 172  VGKPEEERYIAAAVELALATGLPVVATNDVRFVYQQDFAAHEVRVCINQSRVLDDTRRPK 231

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T   YL++  EM ++F+D+PEALENTVEIA+RC+  L +    LP F   E  ++ + 
Sbjct: 232  DYTDQQYLRSIEEMQALFADIPEALENTVEIAKRCNLQLTLGKNFLPDFPVPEGMNLGEF 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               E        L+   A G      + + Y  RLDFEL +I +M F GYF+IVADFIQW
Sbjct: 292  MAEESMKGLEERLQHYPAVGKGTDEENRRIYYDRLDFELKMITQMGFPGYFMIVADFIQW 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N IPVGPGRGSGAGS+ AYAL ITD+DP+ F LLFERFLNP+R+SMPDFD+DFC DR
Sbjct: 352  AKNNLIPVGPGRGSGAGSLVAYALKITDLDPIEFDLLFERFLNPERVSMPDFDVDFCMDR 411

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV   YG + VAQIIT+GS+ AKA +RDVGR L   Y  VDRL KL+P +    
Sbjct: 412  RDEVIDYVARHYGRDHVAQIITYGSMAAKAVIRDVGRVLGFGYGFVDRLSKLVPFEIGMT 471

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            ++ +A+ D    ++    +  V  L++++  LEG  R+A  HA G+VI    L+   P+Y
Sbjct: 472  LT-KALKDSPELKQLYDTEEEVKALIDMALSLEGTSRNAGKHAGGVVISPTKLTDFTPLY 530

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VDLSLI 601
             D   +  VTQF+   +E  GL+KFDFLGL+TLT++  +L  +  +  +     VD+++I
Sbjct: 531  CDQDGNNLVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWALQDINAKHKQLGKPLVDITII 590

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD ++Y LLT   T  +FQLES GM++ ++ ++PDC +DIIALV+L+RPGP+++ +V 
Sbjct: 591  PRDDPDSYKLLTAAQTTAVFQLESRGMKELIKKLKPDCFDDIIALVALFRPGPLESGMVD 650

Query: 662  NNRKNGK-EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +        K    HPL++P+LK T GVI+YQEQVMQIA+ ++ Y+L  AD+LRRAMGKK
Sbjct: 651  DYINVKHGAKAEYAHPLLEPILKPTNGVILYQEQVMQIAREMALYTLGGADMLRRAMGKK 710

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              EEM K++++F +GA +N + + IA  +F+L+ KFA YGFNKSH+AAYA+++YQTAW+K
Sbjct: 711  KPEEMAKERDKFTAGAIENQVDEKIATYVFDLMEKFAGYGFNKSHSAAYALVAYQTAWLK 770

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSL 839
             HY  EF+AA M+ +MDN +K+    ++ +Q  +++ PP++N     F V D   I Y L
Sbjct: 771  AHYQPEFMAAVMSADMDNTDKVVILIEECKQMKLEVCPPTINVSKYKFTVNDAGHIVYGL 830

Query: 840  AAIKGVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             A+KGVG       ++E  A+  F  L D C RVD +K NRRVLE+L+ AGA D F  +R
Sbjct: 831  GALKGVGEAAIEEMLVEREANGLFSGLYDLCKRVDLRKFNRRVLEALIRAGAFDEFDDNR 890

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEK--FSVENSSVRFENE 955
               L  L  + K A+   KN      ++F        +D +          + + R   E
Sbjct: 891  AGHLAELPTVLKVAEQHGKNAQTGQNDLFGLAVNAENADDVDAYNTVVEPWSENERLAAE 950

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-----NIRLAAMVVSKQQKKTR 1010
            + VLG + +GHP++ Y+  LR+      E  +A +  +       R A +VV  + ++T+
Sbjct: 951  KLVLGLFLTGHPINQYEAELRQFTNGTIESLLANVERSKSRKMEARTAGLVVEVRTRQTK 1010

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
             G  +G+ T  +     E   F
Sbjct: 1011 NGKVMGFATIDDRTGRLEIAAF 1032


>gi|284030835|ref|YP_003380766.1| DNA polymerase III subunit alpha [Kribbella flavida DSM 17836]
 gi|283810128|gb|ADB31967.1| DNA polymerase III, alpha subunit [Kribbella flavida DSM 17836]
          Length = 1182

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/1071 (32%), Positives = 551/1071 (51%), Gaps = 54/1071 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S SFVHL VH+ YS+L+GA  ++ +         PAIA TD   +F A EF + A  
Sbjct: 1    MASSDSFVHLHVHTEYSMLDGAARIDELFKTAQEMGMPAIATTDHGYVFGAYEFWKTAKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQ-----------GKTPFPTVPSIVLLVSTAEGYQRLI 113
              ++PIIG +  +    +     +             +       + LL     G   L 
Sbjct: 61   YDVKPIIGVEAYLTPHTHRSERKRVKWGDANSGRDDVSGSGAYTHMTLLAKNTSGMHNLF 120

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            ++ S   L +      R+    LQ  G +GLI  TG  SG +         + A +    
Sbjct: 121  KMSSLASL-EGYYFKPRMDRELLQTYG-QGLIATTGCPSGEVQTRLRLGQYKEAVEAAAE 178

Query: 174  FKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            F+ +FG +  Y  L  H  G +R  +  +++LA    LPLVATN+  +   ED  AH  L
Sbjct: 179  FRDIFGAENYYCELMDHGLGIERNVQQDLLKLARELGLPLVATNDLHYTKPEDATAHAAL 238

Query: 232  MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + V   + +S  +R +    + Y+K  +EM  ++ DLPEA +NT+ IA +C         
Sbjct: 239  LCVQSGSTLSDPNRFKFDANEFYVKTAAEMREVWKDLPEACDNTLLIAEQCDVSFTEGE- 297

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
               RF+ +        EE+    +   GL  R   G           R++ ++E+ VI  
Sbjct: 298  --GRFMPRFPCPEGHNEESWFVAEVETGLHRRYPDGV------PDHVRKQAEYEIEVITS 349

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              ++GYFL+VADFI WAK++ I VGPGRGSGAGS+ AYA+ ITD+DPL+  L+FERFLNP
Sbjct: 350  KGYAGYFLVVADFINWAKEHGIRVGPGRGSGAGSMCAYAMRITDLDPLQHGLIFERFLNP 409

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +RMSMPDFDIDF   RR EVIRYV  KYG +RVA I+T+G+++AK A++D GR L  P++
Sbjct: 410  ERMSMPDFDIDFDDRRRPEVIRYVTEKYGDDRVAMIVTYGTIKAKQAIKDAGRVLDYPFA 469

Query: 471  QVDRLCKLIPN-DPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
              DR+ K +P       V          +  ++   FR+   +D  V ++++ ++ LE L
Sbjct: 470  MGDRITKAMPPAVMGKDVPLSGIFDPQHKRYSEAGEFRQLYESDADVRKIVDTARGLENL 529

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R    HAAG+++   PL +L+P+ R  +    +TQF+    E  GL+K DFLGL+ LT+
Sbjct: 530  KRQWGVHAAGVIMSSEPLIELIPIMRREQDGQVITQFDYPSCETLGLVKMDFLGLRNLTI 589

Query: 582  LQKSLDFLAQRGVKVDLSL---IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            +  ++  +                 DD  T+ LL    TLG+FQ +   MR  L  M+PD
Sbjct: 590  MDDAVKNVEASRGITLDLDELAKTLDDKATFELLGRGDTLGVFQFDGGPMRALLRLMKPD 649

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQ 692
              EDI A+ +LYRPGP+  ++   Y  RKN +++I   H      ++P+L  T G+I+YQ
Sbjct: 650  NFEDISAVGALYRPGPMGANSHTNYALRKNKQQEISYPHDELAVALEPILGTTYGLIVYQ 709

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVM IAQ L+GY+L +AD+LRRAMGKK +E +D +   F  G    G S      ++++
Sbjct: 710  EQVMAIAQQLAGYTLGKADLLRRAMGKKKREVLDAEYVGFSEGMKAGGFSDASIKALWDV 769

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  F+DY FNK+H+AAY ++SY TA++K +YP E++AA +T   D+ +K+  +  + R+ 
Sbjct: 770  LVPFSDYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAAVLTSVKDDKDKMAIYLNECRRM 829

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
             I+++PP VN    +F      I + L+AI+ VG      I+ A  +   F    DF  +
Sbjct: 830  GIKVLPPDVNESDSNFTPVGTDIRFGLSAIRNVGVNVVAEIVAAREEKGRFTDFVDFIDK 889

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V     N+RV+ESL  AG+ D   ++R  ++   +     A  +++N  +   ++F+   
Sbjct: 890  VPLPVCNKRVIESLAKAGSFDSMNHARRAVVAVHEQAVDEAIDLKRNEAHGQFDLFSMGD 949

Query: 932  GTFSD-------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                D        +T+ +    + + +  +E+ +LG Y S HPL   + +L         
Sbjct: 950  DDAEDGEGNRRLTVTVPEIEEWDKATKLAHERDMLGLYVSDHPLFGVEHVLTNGTDCTIG 1009

Query: 985  ESV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +       G+ + +  +V + Q+K  ++G     VT  +     E   F
Sbjct: 1010 QLLADEDRPDGSQVTIGGLVTAVQRKVNKRGDIYAIVTIEDLEGSIEVMMF 1060


>gi|221199588|ref|ZP_03572632.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2M]
 gi|221205512|ref|ZP_03578527.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2]
 gi|221174350|gb|EEE06782.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2]
 gi|221180873|gb|EEE13276.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2M]
          Length = 1179

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1044 (39%), Positives = 609/1044 (58%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F ++A +
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   KGVKPIAGCDVWITNPDDRDKP----------SRLLLLVKNKRGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL+   +EGL+ L+G   G I  A    + + A +    + K+F    Y+
Sbjct: 110  YRGRAELDASWLEGELSEGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q   LA + +LP+VAT+ + F++++D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T + Y + + EMV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   
Sbjct: 230  RRQKRFTTEQYFRTQDEMVALFADLPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GLE    +L      +      Y +RL+FE   I +M F GYFLI
Sbjct: 290  L----DDYLIQLSKEGLEKRLVQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV++KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKDKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKAD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              LS +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLSQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+S+  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMVKHREIFAEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---D 832
            TAW+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+     D
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCIMNNLVVLPPDINQSHYRFEPVAEPD 825

Query: 833  NR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             +    I Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ A
Sbjct: 826  GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRIVNRRTVEALIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R QLL S+          +         +F     +      L      + 
Sbjct: 886  GAFDSLNANRAQLLASVP--LAMEAAEQAEANALQAGLFDMGAES-PHAHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   +           +A ++ S + + 
Sbjct: 943  KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKIGDLKEGRDK---LVAGIIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MLIALLDDGTGQCEITIF 1022


>gi|123966261|ref|YP_001011342.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str. MIT
            9515]
 gi|123200627|gb|ABM72235.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str. MIT
            9515]
          Length = 1165

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1043 (36%), Positives = 592/1043 (56%), Gaps = 28/1043 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L  HS YSLL+GA  ++ I+D+ +     +IA+TD   ++  L+  +K    GI+PI
Sbjct: 3    FVPLHNHSDYSLLDGASQVSKIVDRASELGMESIALTDHGVMYGVLDLVKKCKDKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ--- 127
            IG ++ I          +          +V+L    EGY+ L++L +  +L     +   
Sbjct: 63   IGNEMYIINGSIDDPQPK----KEKRYHLVVLAKNHEGYKNLVKLTTISHLNGMRGRGIF 118

Query: 128  -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  S L++   +GLI+ T    G I +A       VAE     +K L G+  Y+ +
Sbjct: 119  SRPCIDKSLLEKY-KDGLIISTACLGGEIPQAILKGRIDVAENIACWYKNLLGEDFYLEI 177

Query: 187  QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    DR    +++++   +++ ++ATN++ ++S  D EAHD L+ V    ++S + R
Sbjct: 178  QDHGSMEDRIVNVEMIRIGKKYQIKVIATNDAHYISNMDVEAHDALLCVLTGKLISDEKR 237

Query: 246  PRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R T   Y+K+  EM+ +F+D    E+++  +      S  ++V        + K     
Sbjct: 238  LRYTGTEYIKSEIEMLRLFNDHIDNESIKEAINNTVEVSQKIEVFDLFGTYRMPKFPLKE 297

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +K+  + L   +  GL  RL +  +      + Y +RL  EL +I  M F  YFL+V D+
Sbjct: 298  EKDSLSFLTKISKEGLLKRLNKANLD--EVDEIYTKRLSSELKIINDMGFPDYFLVVWDY 355

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++A+ N+IPVGPGRGS AGS+ A++L IT+IDP++  LLFERFLNP R SMPD D DFC
Sbjct: 356  IKFARDNSIPVGPGRGSAAGSLVAFSLQITNIDPVKHGLLFERFLNPARKSMPDIDTDFC 415

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRR EVI YV N+YG ++VAQIITF  + +KA L+DV R L +PY + D+L KLIP   
Sbjct: 416  IDRRSEVIDYVTNRYGEDKVAQIITFNKMTSKAVLKDVARVLDIPYGESDKLAKLIPVVR 475

Query: 484  AHPVSLQAIAD----DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
              P  L  + D       FR+  L D  V R ++++ ++EG  +    HAAG+VI    L
Sbjct: 476  GKPYKLNEMIDKKSPSPEFRDKYLKDSKVKRWVDLALRIEGTNKTYGVHAAGVVIASESL 535

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDL 598
              LVP+ R+      +TQ++M  IE  GL+K DFLGLK LT++ K++  +    G K+++
Sbjct: 536  DMLVPLQRN-NEGQIITQYSMDDIESLGLLKMDFLGLKNLTMIDKTISLIESSTGQKINV 594

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN- 657
              +P +D++T+ L+      GIFQLESSGM+Q ++  +P+ +EDI ++++LYRPGP+D  
Sbjct: 595  DELPPNDNKTFDLIGRGDLEGIFQLESSGMKQVVKDFKPNSLEDISSILALYRPGPLDAG 654

Query: 658  -IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             I  + NRKNG EKI   HPLI  +L ET G+++YQEQ+M+IAQ L+GYSL +AD+LRRA
Sbjct: 655  LIPKFINRKNGSEKIDFPHPLIKSILTETYGIMVYQEQIMKIAQDLAGYSLGDADLLRRA 714

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK   EM K +  FI GA K G+ K IA ++F+ +  FA+Y FNKSH+ AY  ++YQT
Sbjct: 715  MGKKKVSEMVKHRNIFIEGACKKGVDKKIANDLFDQMVLFAEYCFNKSHSTAYGAVTYQT 774

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K HYPV ++A+ +++   + +K++++  +     I+++ PS+N+  +DF V  ++I 
Sbjct: 775  AFLKAHYPVAYMASLLSVNAGSSDKMQRYISNCYSMGIEVISPSINSSGIDFTVKKDQIL 834

Query: 837  YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF- 894
            + L+AIK +G +  ++I+E       F S  D C R+ S  LN+R LESL+  GALD F 
Sbjct: 835  FGLSAIKNLGDSAIKNIIENRNKLGNFKSFSDLCDRLPSNILNKRNLESLIHCGALDEFS 894

Query: 895  -GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE---KFSVENSSV 950
               +R QL   LD + ++A    ++R +   N+F         + +L    K    +   
Sbjct: 895  ENKNRAQLFSDLDYVMEWASSRNRDRISGQGNLFDSISNIEHKEFSLPKGSKVDDYSLIE 954

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            + + E+++LGFY S HPL       + +      +   +     + L  M+   +Q  TR
Sbjct: 955  KLKLEKQLLGFYLSDHPLKHLAKPAKLVSPISISQLENSHDRTKVSLVGMIPELKQITTR 1014

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
            KG R+  V   + +   EA  FP
Sbjct: 1015 KGDRMAIVQLEDLSGTCEAIVFP 1037


>gi|224418173|ref|ZP_03656179.1| DNA polymerase III subunit alpha [Helicobacter canadensis MIT
            98-5491]
 gi|253827500|ref|ZP_04870385.1| DNA polymerase III, alpha subunit [Helicobacter canadensis MIT
            98-5491]
 gi|313141708|ref|ZP_07803901.1| DNA polymerase III subunit alpha [Helicobacter canadensis MIT
            98-5491]
 gi|253510906|gb|EES89565.1| DNA polymerase III, alpha subunit [Helicobacter canadensis MIT
            98-5491]
 gi|313130739|gb|EFR48356.1| DNA polymerase III subunit alpha [Helicobacter canadensis MIT
            98-5491]
          Length = 1171

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1060 (35%), Positives = 590/1060 (55%), Gaps = 44/1060 (4%)

Query: 5    LEKSP--------SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL 56
            + K+P        SF HL +H+ YSLL+G   +  +  +I      ++AITD  N+F A+
Sbjct: 1    MSKTPNEIITPQISFTHLHLHTEYSLLDGLNKIKVLAKRIKELGMDSVAITDHGNMFGAI 60

Query: 57   EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            EF +     GI+PI+G +  +   + +   +  +        + L     EGY+ L+ L 
Sbjct: 61   EFYKAMKEQGIKPILGMEAYLHNAEEISDKSNQR------FHLCLYAKNLEGYKNLMYLS 114

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF--------FNSSQVAE 168
            S+  L        RI    L+E  + GLI  +   +G +                 + A+
Sbjct: 115  SQACLYG-YYMKPRISKKMLRE-HSAGLICSSACLNGEVQWHLNVKKDDNKGRKGYERAK 172

Query: 169  KRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +  L ++ +FG+  Y+ L RH   ++   ++Q++Q++    + ++ATN++ +  + D  A
Sbjct: 173  EVALEYQDIFGEDFYLELMRHGIEEQQLIDNQILQISLETGIKIIATNDTHYTKQSDSTA 232

Query: 228  HDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
             +V   +      +  +R R T  + Y+K+  EM  +++D PEAL NT EIA +C+  L 
Sbjct: 233  QEVAFCIGFGKDFNDPNRMRHTVQEFYIKSPEEMAQLYADFPEALANTQEIANKCNLELH 292

Query: 287  VHAPILPRFIEKECDDIQKEEE-----NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            +  P  P F         +  +          K   GL+ RL           Q+Y +RL
Sbjct: 293  LGDPTPPSFKFTAEYAKAENLDFTQDSEYFAYKCREGLKKRLLNIP---QEKHQEYTERL 349

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + E+ +I +MKF GY LIV DF++ AK+  IPVGPGRGS AGS+ A+ L IT+IDP+++ 
Sbjct: 350  EREIEIINKMKFPGYMLIVWDFVRAAKERGIPVGPGRGSAAGSLVAFCLEITNIDPMKYD 409

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPD D+DFCQ RR+E++ YV  KYG   VAQ+ITFG ++AKA +RDV
Sbjct: 410  LLFERFLNPERVSMPDIDMDFCQSRREEILEYVTEKYGRHNVAQVITFGMMKAKAVIRDV 469

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
             R + MPY + D   KLIP D    +       + + +E    +P   ++ + +  LE  
Sbjct: 470  ARVMGMPYGEADSFAKLIPKDLDITLEKA-YEKEPKIKELIEKNPLAKKIWDFAVILENT 528

Query: 522  YRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
             R+  THAA +VI  +  L    P+YR  R  +  TQ++MK++E   LIKFDFLGLKTLT
Sbjct: 529  KRNPGTHAAAVVIDSENELWHKAPLYRSSRDGIIATQYSMKYLEDVDLIKFDFLGLKTLT 588

Query: 581  LLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            L+  +L  +  R   ++D   +  DD + Y  L +  TLGIFQ+ESS  +   + ++P  
Sbjct: 589  LIDDALKLIKNRHHLEIDFLKLDVDDKKVYETLQSGNTLGIFQIESSMFQGINKRLKPST 648

Query: 640  IEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             EDIIA+++L RPGP+++ +   + +RK+GK  IV + P ++P+LK T G I+YQEQVMQ
Sbjct: 649  FEDIIAIIALGRPGPMESGMVSDFIDRKHGKAPIVYMFPELEPILKPTYGTIVYQEQVMQ 708

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            I Q + G+SL EAD++RRAMGKK  + M   K +F  GA   G  K  A  ++EL+ KFA
Sbjct: 709  IVQRIGGFSLGEADLIRRAMGKKDAQIMADNKNKFAQGAQSQGFDKAKAEELWELIVKFA 768

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             YGFNKSH+AAYA+++++TA++KT+YP EF+AA +T E +  EKI ++ ++A + +I+++
Sbjct: 769  GYGFNKSHSAAYAMLTFETAYLKTYYPKEFMAALLTSEKNATEKIVEYIEEANKMDIKVL 828

Query: 818  PPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRV 872
            PP++    ++F V    G++ I + L AIKG G      I+E   +   F  LEDF +R+
Sbjct: 829  PPNLQKSELEFSVAKIEGEDCILFGLGAIKGAGEVAINVILEERKNNGEFKDLEDFLARI 888

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D +K+N++ LES + +GA+DCF Y+R  LL+ ++ + + A+  +  R     ++F   + 
Sbjct: 889  DPQKVNKKSLESFIKSGAMDCFNYTRKTLLEQVEILTESARVAQTARKEAENSLFGDSEE 948

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
              S  + LE     +     E E+  LGFY SGHPL+ YK I++ +      +       
Sbjct: 949  FTSVALELENKGEFDKKQILEFEKESLGFYASGHPLENYKEIIKSIDCVYTNQIQDIAEN 1008

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++I L   +     K ++ G R G +   +     E   F
Sbjct: 1009 SHILLIGSIEDVITKFSKTGKRYGILKLQDLYGSIELTIF 1048


>gi|256544919|ref|ZP_05472290.1| DNA polymerase III alpha subunit [Anaerococcus vaginalis ATCC 51170]
 gi|256399418|gb|EEU13024.1| DNA polymerase III alpha subunit [Anaerococcus vaginalis ATCC 51170]
          Length = 1149

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1057 (34%), Positives = 567/1057 (53%), Gaps = 49/1057 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  F HL +H+ YSLL+G   ++ +++K+      + AITD  N++  +EF +K  A
Sbjct: 1    MTNN--FTHLHLHTEYSLLDGFTKIDKLMEKLKEFGMDSCAITDHGNMYGVIEFYKKCQA 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              I+PIIGC++ I   D    T Q K        ++LL     GY+ L+++VS+ Y    
Sbjct: 59   NNIKPIIGCEVYICENDYKIKTPQNK----RYYHLILLAKNNNGYKNLLKIVSKAYTQ-G 113

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 RI    L+E   E LI L+   +G I++    N  + A      +  LFG +  Y
Sbjct: 114  YYYKPRIDFEVLKEY-KEDLIGLSACLNGEINQRILENDIKKAYSTAKKYLDLFGKENFY 172

Query: 184  VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H   ++      ++++    ++ LV TN+  ++ + D    DVL  +   +++  
Sbjct: 173  LEVQYHGLKEQKKVNEVLLRIHKDLDIELVCTNDVHYVEKNDAFYQDVLSCIQTGSLLED 232

Query: 243  KDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            ++R ++   + YLK+   M  IF + P A ENT +I+  C+  L+ H P LP F +   D
Sbjct: 233  ENRMKMPVDEFYLKDSQMMEEIFKEFPRAFENTQKISAMCNVSLEFHNPHLPYFTKLPKD 292

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                     L+     GL  +            +   +R   E++VI  M +  YFLIV 
Sbjct: 293  TTNL---EYLKILVKEGLIKKYKN-------LDEKIIKRAKKEIDVINNMGYVDYFLIVW 342

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DF+++AK N I VGPGRGS AGS+ +YAL IT IDPL++ LLFERFLNP+R+SMPD DID
Sbjct: 343  DFVKYAKDNKIAVGPGRGSAAGSIVSYALDITQIDPLKYDLLFERFLNPERVSMPDIDID 402

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC + RD+V+ YV   YG + V+QI+TFG +QA+ A+RDVGR + + Y++VD++ KLIP 
Sbjct: 403  FCYENRDKVVEYVYELYGRDHVSQIVTFGRMQARNAIRDVGRVMNISYNKVDKIAKLIPQ 462

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +  +A+    +       D    R+++ ++ +E L RH S HAAG+VI    L+ 
Sbjct: 463  AIGMTID-KALDSTEKLAYEYQNDVETKRMIDTARNIEALPRHTSIHAAGVVISKEILTD 521

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSL 600
            +VP+     +D  VTQFNM  IE+ GL+K DFLGL+ LT++Q ++ D    + +++DL  
Sbjct: 522  IVPLALS--NDQIVTQFNMTEIEELGLLKMDFLGLRNLTVIQDTIKDIKKNKNIEIDLGA 579

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            I  +D +     T   T+GIFQ ES+GMR  L+ ++P   +D++A  SL+RPGP+D I  
Sbjct: 580  IDENDPKVISQFTKAETVGIFQFESAGMRNFLKNLKPTRFDDLVAANSLFRPGPMDQIPN 639

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y   K   + I  I   + P+L+ T G+I+YQEQVMQI Q L+G+SL EAD LRRAM KK
Sbjct: 640  YIKNKINPQNISYIDDALKPILEVTYGIIVYQEQVMQIVQKLAGFSLGEADNLRRAMSKK 699

Query: 721  IKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
                M+  +E F+             G   NGIS+  A  I++ +  FA Y FNKSH+AA
Sbjct: 700  KMSVMEANREIFVHGKKNQNGEYEVIGCVNNGISEINANKIYDEMISFAKYAFNKSHSAA 759

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y++++ QTA++K ++  E++A  +T  M N  K+  +  +A++  I+I+PP++N     F
Sbjct: 760  YSLVAIQTAFLKYYFKEEYMANLLTSIMGNSSKVYLYISEAKRLGIKIVPPNINKSKRRF 819

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESL 885
               +N I + L+AIK VG      I+    +K F S +DF  R+   D   LN++ LESL
Sbjct: 820  IASENEIVFGLSAIKNVGENLIDLIVNLRKEKNFKSFKDFLERIEANDPTVLNKKALESL 879

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKITLEKF 943
            + AG  DC GY R +L+   +   +     EK       N+  F   K    D I     
Sbjct: 880  IKAGVFDCMGYKRSELMAVHETALQSIHDNEKVNLKGQMNLLDFDQNKEEIIDDIKFPPV 939

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-------RGNNIR 996
            +   +  + + E+ VLGFY S HPL+     L+       E                ++R
Sbjct: 940  NEYKNKQKLKLEKEVLGFYISDHPLNSLGNNLKNYVNFTTEILSELRPVDLDKFDNKSVR 999

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +A ++ +K +  T+K + + + +  + +   +   FP
Sbjct: 1000 MAGIITNKSETMTKKSTLMAFCSLEDMSGSIDMIIFP 1036


>gi|54296983|ref|YP_123352.1| DNA polymerase III, alpha chain [Legionella pneumophila str. Paris]
 gi|53750768|emb|CAH12175.1| DNA polymerase III, alpha chain [Legionella pneumophila str. Paris]
          Length = 1148

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 426/1039 (41%), Positives = 625/1039 (60%), Gaps = 35/1039 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VH+ +SL++G + +  ++  + A     +A+TD  NLF+A++  + A  AGI+P
Sbjct: 4    RFVHLRVHTEFSLVDGLVQIKPLMKALPARGMSTVAVTDFCNLFAAVKVFKSATEAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  L                    + S+VLL     GY+ L  LVS+ Y   Q     
Sbjct: 64   IIGSDL----------PCHDLETPDNIFSLVLLCQDTAGYKNLTCLVSKAYQEGQYHGQP 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+ L W+ E  ++GLI L+GG  G I +A   N   +A KR L +  LF +R Y+ +QR 
Sbjct: 114  RVQLQWIPEF-SQGLIALSGGKFGDIGQALLANDDTLARKRALHWMNLFPNRFYLEIQRT 172

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
               D  +   ++V LA   +LPLVATN+  F++E+D++AH+  + +     ++   R  +
Sbjct: 173  GRADELHYNEKLVALADELQLPLVATNDVRFINEDDFDAHEARVCIHEGYTLADPRRVQQ 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   YL++  EM  +FSDLP AL+NTVEI++RC+  L++    LP F   +        
Sbjct: 233  YSSQQYLRSADEMELLFSDLPSALQNTVEISKRCNVKLELGHNYLPNFPIPDG----TTV 288

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYH-----AQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            E  L + +  GLE RL Q    K          +Y +RL  EL+VI  M F+GYFLIVAD
Sbjct: 289  EAYLSHLSEIGLEERLKQLFRDKSEGELLVARGEYDKRLKIELDVINNMGFAGYFLIVAD 348

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK+N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 349  FIQWAKQNGVPVGPGRGSGAGSLVAYALKITDLDPLEYELLFERFLNPERVSMPDFDIDF 408

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD VI YV  KYG + V+QIITFG++ AKA +RDVGR L  PY  VD+L KLIP +
Sbjct: 409  CMEGRDRVIEYVAEKYGRQSVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDKLAKLIPFE 468

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +S +A+  +   R     +  V  L +++ KLEG+ R+A  HA G+VI    L+  
Sbjct: 469  LGITLS-KAMEQEEELRRRYEEEEEVKELFDLALKLEGVTRNAGKHAGGVVIAPSQLTDF 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-----VD 597
              +Y +  S   V+QF+   +E  GL+KFDFLGL+TLT++  +L  + ++        +D
Sbjct: 528  TAIYCEEGSTQIVSQFDKDDVEAVGLVKFDFLGLRTLTIIDWALATVNKQCENAGLSPID 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +S IP  D  T+ LL    T  +FQLES GM++ +  +QPDC EDIIALV+L+RPGP+ +
Sbjct: 588  ISQIPTSDDSTFELLKACKTTAVFQLESRGMKELISRLQPDCFEDIIALVALFRPGPLQS 647

Query: 658  IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +   + +RK+G+ ++   HP ++P+LK T GVI+YQEQVMQIAQ+L+ Y+L  AD+LRR
Sbjct: 648  GMVDDFIDRKHGRARVDYPHPDLEPILKPTYGVILYQEQVMQIAQVLANYTLGAADLLRR 707

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM KQ+E F  GA   G+ + +A +IF+L+ KFA YGFNKSH+AAYA+++YQ
Sbjct: 708  AMGKKKPEEMAKQREIFTQGAVARGVDEQVATHIFDLMEKFAGYGFNKSHSAAYALVAYQ 767

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K HYP  F+AA M+ +MDN +K+  F  +     +Q++PPS+N     F V D + 
Sbjct: 768  TAWLKAHYPAAFMAAVMSSDMDNTDKVVTFIDECAHMKLQVLPPSINNSMYHFTVSDEKT 827

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y L AIKGVG +    I++    + PF  L  FC R+D +K+NRRV+E+L+ +GA D 
Sbjct: 828  IIYGLGAIKGVGESAIECIIQERNQNGPFLDLFGFCQRLDLRKVNRRVIEALIKSGAFDI 887

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            +   R  L  SL+   K A+   +N+++   ++F+  +   +D+    +    + + R E
Sbjct: 888  WKVERAVLTASLEKALKVAEKEHQNQSSGQFDLFSLLED-KADEQNYVESKSWSEAQRLE 946

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ VLGFY +GHP D Y+  L    I    +   ++    I + A VV+ ++  T++G 
Sbjct: 947  GEREVLGFYLTGHPADRYRRELGDF-IVPVGQLNPSLHKKAI-ICAQVVAIRKIITKRGK 1004

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            ++  +   +     +A  F
Sbjct: 1005 KLVIIGMDDATARIDAVVF 1023


>gi|227357235|ref|ZP_03841592.1| DNA polymerase III, alpha chain [Proteus mirabilis ATCC 29906]
 gi|227162498|gb|EEI47487.1| DNA polymerase III, alpha chain [Proteus mirabilis ATCC 29906]
          Length = 1144

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1032 (39%), Positives = 600/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K+A+   PA AITD  NL   ++F   A  AGI+PI+G  + ++ + 
Sbjct: 1    MIDGLAKTGPLVKKVASLGMPAFAITDFTNLCGLVKFYGAAHGAGIKPIVGADVYLETE- 59

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                             + +L     GYQ L  L+S  Y    G     I   WL     
Sbjct: 60   ---------LLGDEYAHLTILARDNVGYQNLTLLISEAYKHGYGAAGPVIKQEWLTTY-K 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGL++L+GG  G + +     +  + E+ L  ++  F D  Y+ L R    D      + 
Sbjct: 110  EGLLLLSGGRMGDVGKFLLRGNRALVEQCLEYYQTHFPDSYYLELIRTGRPDEESYLHEA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSE 259
            V LA    LP+VATN+  FL  +D++AH++ +A+     +S   RP+  +P  Y++   E
Sbjct: 170  VALASEKGLPVVATNDVRFLDSDDFDAHEIRVAIHDGFTLSDPKRPKHYSPQQYMRTEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEALEN+VEIA+RC+  +++           +        E+ L  K+  GL
Sbjct: 230  MCELFADIPEALENSVEIAKRCNVTIRLGEYF-----LPQFPTGDMSTEDFLIKKSKEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLAFLFPDPQEREKRRPEYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD VI +V +
Sbjct: 345  GRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A A + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-KAFAAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D   + PVT
Sbjct: 464  QLPEIYEADEEVKSLIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDPEGNNPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        VD+S I   D  ++ +
Sbjct: 524  QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKSLEPVDISAISLTDQRSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + +V  + +RK+G E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGVE 643

Query: 670  KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVKWQHESLQPVLEPTYGVILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F +GA KNG+   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEAGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V D   I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  + D C+R ++KKLNRRV+E L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIVEARQQGGHFKDIFDLCARTETKKLNRRVMEKLIMSGAFDKLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL++  K A    K       ++F    +     + +          V  E E+  LG 
Sbjct: 884  SSLEDALKAADQHAKAEAIGQSDMFGVLAEAPEQVERSYANVPKWPDQVVLEGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP+  Y   + +       ++ V T RG  +++A +V++ +   T++G+RIG  T 
Sbjct: 944  YLTGHPITRYLKEIERYAAGTRLKDLVPTPRGQMVKVAGLVLASKVFTTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEIMLF 1015


>gi|161524140|ref|YP_001579152.1| DNA polymerase III subunit alpha [Burkholderia multivorans ATCC
            17616]
 gi|189351103|ref|YP_001946731.1| DNA polymerase III subunit alpha [Burkholderia multivorans ATCC
            17616]
 gi|160341569|gb|ABX14655.1| DNA polymerase III, alpha subunit [Burkholderia multivorans ATCC
            17616]
 gi|189335125|dbj|BAG44195.1| DNA polymerase III alpha subunit [Burkholderia multivorans ATCC
            17616]
          Length = 1179

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1044 (39%), Positives = 609/1044 (58%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F ++A +
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   KGVKPIAGCDVWITNPDDRDKP----------SRLLLLVKNKRGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL+   +EGL+ L+G   G I  A    + + A +    + K+F    Y+
Sbjct: 110  YRGRAELDASWLEGELSEGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q   LA + +LP+VAT+ + F++++D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T + Y + + EMV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   
Sbjct: 230  RRQKRFTTEQYFRTQDEMVALFADLPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GLE    +L      +      Y +RL+FE   I +M F GYFLI
Sbjct: 290  L----DDYLIQLSKEGLEKRLVQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV++KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKDKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKAD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              LS +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLSQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+S+  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMVKHREIFAEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---D 832
            TAW+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+     D
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCIMNNLVVLPPDINQSHYRFEPVAEPD 825

Query: 833  NR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             +    I Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ A
Sbjct: 826  GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRIVNRRTVEALIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R QLL S+          +         +F     +      L      + 
Sbjct: 886  GAFDSLNANRAQLLASVT--LAMEAAEQAEANALQAGLFDMGAES-PHAHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + + 
Sbjct: 943  KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKIGELKEGRDK---LVAGIIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MLIALLDDGTGQCEITIF 1022


>gi|254463266|ref|ZP_05076682.1| DNA polymerase III, alpha subunit subfamily, putative
            [Rhodobacterales bacterium HTCC2083]
 gi|206679855|gb|EDZ44342.1| DNA polymerase III, alpha subunit subfamily, putative
            [Rhodobacteraceae bacterium HTCC2083]
          Length = 1168

 Score =  757 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 495/1058 (46%), Positives = 680/1058 (64%), Gaps = 47/1058 (4%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             + K+P F+HL+ H+ YSLLEGAL L  + D   +   PA+A+TDTNNLF+ALEFS  A 
Sbjct: 2    AMTKAPRFIHLRAHTEYSLLEGALRLKKLPDLCKSMDMPAVAVTDTNNLFAALEFSVGAS 61

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AG+QPIIGCQ+DI       +  Q          +VLL     GY+ L++L S +Y+ +
Sbjct: 62   GAGVQPIIGCQVDITY-----LAAQPGERAKAPAPLVLLAQNEVGYENLMKLNSCLYIDN 116

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             G Q  ++ L  L  +   GLI L+GG  G I +         AE  +      FGDRLY
Sbjct: 117  DG-QLPQVSLDDLDTLNA-GLICLSGGPEGAIGKLLQGGQRPAAEALMDRLHGAFGDRLY 174

Query: 184  VNLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            V LQRH         +R  E   V++AY   LPLVATN+  F     YEAHD L+ +A  
Sbjct: 175  VELQRHPENGGLPEAERLTERGFVEMAYAKSLPLVATNDVYFPKSSMYEAHDALICIADG 234

Query: 238  TV-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
                 Q  R ++T  HY K++ EMV++F+DLPEA++NT+EIA+RC+F             
Sbjct: 235  AYVDQQDPRRKLTAQHYFKSQEEMVTLFADLPEAIKNTIEIAKRCAF--------QAYRR 286

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            +        +E  ELR  A  GL+ RLA   I      ++Y++RLDFEL++I  M F GY
Sbjct: 287  DPILPKFADDEVAELRRIANEGLQKRLA--VIPHSVTLEEYQERLDFELDIIEGMGFPGY 344

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFIQWAK N IPVGPGRGSGAGS+ AYALT+TD+DPLR+SLLFERFLNP+R+SMP
Sbjct: 345  FLIVADFIQWAKDNGIPVGPGRGSGAGSLVAYALTVTDLDPLRYSLLFERFLNPERVSMP 404

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL 
Sbjct: 405  DFDIDFCMDRREEVIQYVQEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLS 464

Query: 477  KLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            K+IP +   PVS++  +AD+ R RE    +  V RLL+  Q++EGL R+ASTHAAG+VIG
Sbjct: 465  KMIPVEGVKPVSIEKALADEPRLREEARNEEVVKRLLDYGQQVEGLLRNASTHAAGVVIG 524

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            DRPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ +   G +
Sbjct: 525  DRPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMEQITAGGRQ 584

Query: 596  VDL------------------SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            + +                  + IP DD  +Y L  +  T+ +FQ+ESSGM  AL+ M+P
Sbjct: 585  LHIAADGTELYTPAAGTVDDINAIPLDDENSYKLYASAKTVAVFQVESSGMMDALKRMKP 644

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             CIEDI+ALV+LYRPGP++NI  Y   KNG ++  S+HPLID +L+ETQG+I+YQEQVMQ
Sbjct: 645  TCIEDIVALVALYRPGPMENIPTYCEVKNGLKERESVHPLIDHILEETQGIIVYQEQVMQ 704

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IAQ+++GYSL  AD+LRRAMGKKI EEM K++ +F  GA +NG+    A  +F+LL KFA
Sbjct: 705  IAQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAKENGVPAKKASEVFDLLEKFA 764

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQI 816
            +YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ ++  ++  
Sbjct: 765  NYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVKKGLDLPW 824

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            +PP VN     FKV +  + Y+L A+K VG    + ++E   DKPF ++ D   RVD K+
Sbjct: 825  VPPCVNRSDATFKVANGELVYALGALKNVGVEAMKLVVEGRGDKPFSTIYDLARRVDLKR 884

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            + +R LE LV +GA D    +R ++  SLD +  Y+Q + + + +   ++F  E G    
Sbjct: 885  VGKRPLEMLVRSGAFDQLDPNRRRVFDSLDGLVNYSQAIFEQKNSNQVSLFG-EAGADLP 943

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-TIRGNNI 995
            +  L   S    + R   E R +GFY SGHPLD Y   L++ G+   +E  A    G  +
Sbjct: 944  EPRLSPVSDWMPAERLNEEFRAVGFYMSGHPLDDYMAPLKRKGVMTLDEVTAKAENGALV 1003

Query: 996  -RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +LA +V  +Q++K+ +G+R  +   S+ +  YE   F
Sbjct: 1004 AKLAGVVAGRQERKSARGNRFAFAQLSDTSGAYEVTLF 1041


>gi|91202895|emb|CAJ72534.1| similar to DNA polymerase III, alpha subunit [Candidatus Kuenenia
            stuttgartiensis]
          Length = 1155

 Score =  757 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1035 (38%), Positives = 600/1035 (57%), Gaps = 31/1035 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YSLL+GA  + +++ K    + PA+A+TD  N++ A+EF + A +AGI+PI
Sbjct: 6    FVHLHVHSEYSLLDGACKIKDLVSKALHFKMPALALTDHGNMYGAIEFYEAAQSAGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +     L    + K    T+  I LL    EGY+ L++L +  YL +      R
Sbjct: 66   IGYEAYVAQGGRLDK--ESKNGKETLSHITLLAENYEGYRNLLKLSTSAYL-EGFYYKPR 122

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRH 189
            I    L +  + G+I L+G  +  I+R   F+    A    + + +LFG+   Y+ +Q +
Sbjct: 123  IDKELL-KSHSAGIICLSGCMASEINRHLSFDRHDDAMNLAIEYLELFGENHFYLEIQNN 181

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +        S   ++  T  +PLVATN+  +++ +D  AHD L+ +     VS + R R 
Sbjct: 182  KIPLQEKLVSAAFKIGKTLNIPLVATNDVHYMNIDDAVAHDALLCINTGKRVSDRQRLRF 241

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + Y KN  EM ++F ++P ALENT+ IA RC   +      LP+F   E    +   
Sbjct: 242  DTNEFYFKNYQEMHALFKEIPHALENTLHIAERCDVKMDFGKLHLPKFTPPEGISNK--- 298

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     G+           G       +RLD EL VI +  F  YFLIV DFI +A
Sbjct: 299  -AYLRKLCEEGVIR-------KYGAILPHISERLDHELKVIEKTGFVEYFLIVWDFIHYA 350

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
               NIP   GRGSGAGS+ AY L IT+IDP+   LLFERFLN +R+SMPD DIDFC + R
Sbjct: 351  NTLNIP-ATGRGSGAGSIVAYVLNITNIDPIENDLLFERFLNAERISMPDLDIDFCAEGR 409

Query: 428  DEVIRYVQNKYGHE-RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            +E+IRYV+ KYG +  VAQIITFG+++AKA +RDVGR L +P S+VD++ KLIPN     
Sbjct: 410  EEIIRYVREKYGGDSNVAQIITFGTMKAKAVIRDVGRVLDIPLSEVDKIAKLIPNTLNIT 469

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  +   +    A+     L +IS+KLEGL RHAS HAAGIVI D PL++ VP+ 
Sbjct: 470  LE-EALEQEPALKAICQAEKQFKELFDISKKLEGLCRHASVHAAGIVISDEPLTEYVPLA 528

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDD 605
            +     +    ++   ++K GL+K DFLG++ LT+++++L  + +     +DL+ IP DD
Sbjct: 529  KKG-DAVTTQYYDEILVDKIGLLKADFLGVRKLTVIKRALQLIHETTREIIDLAKIPVDD 587

Query: 606  HETYHLLTTKGTLGIFQLESS-GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YN 662
              TY +L++    G+FQ+E+S G ++ L+ ++PD   DI+ LV+LYRPGP+ + +V  + 
Sbjct: 588  KATYQMLSSGNVKGVFQVETSKGFKELLKKLKPDTFADILPLVALYRPGPLQSGMVDSFI 647

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            NRK+GKE +  IHP ++ +LKET GVI+YQEQVM+IA  L+G++L+EAD LR+AMGKK  
Sbjct: 648  NRKHGKEAVEYIHPTLELILKETYGVILYQEQVMRIANRLAGFTLNEADNLRKAMGKKKP 707

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E M K K++F++GA  N I K  A+ IFEL+  FA YGFNKSH+AAYAVI+YQTA++KT+
Sbjct: 708  EIMAKFKDQFVNGAISNDIPKKTAIKIFELMEFFAGYGFNKSHSAAYAVITYQTAYLKTN 767

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAA 841
            YP++++ A ++ E  N EKI  + +D R+ NI+I+ P VN    DF +   N+I + L +
Sbjct: 768  YPLQYMTAQLSCEKQNTEKIIDYIEDCRRMNIEILKPDVNESLSDFIISEGNKIRFGLGS 827

Query: 842  IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +K  G      I+ A      F S+ DFC RVD + +N++V+ESLV +G+ D     R +
Sbjct: 828  VKNAGDKAIESIVSAREKGGKFSSILDFCKRVDLRTVNKQVIESLVKSGSFDSLSDDRAR 887

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK---ITLEKFSVENSSVRFENEQR 957
            LL SLD+  +    V K +      +F         +     +   +  N +   + E+ 
Sbjct: 888  LLASLDSAMELGSAVNKGKRKGQRALFDIGSAMDVIETGNTAISNTTPWNENEIRQAEKE 947

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             LGFYFS  PL  Y+  ++ +      E      G ++ +  ++   ++  T+KG  + +
Sbjct: 948  SLGFYFSSSPLSEYEEKIKLLATNSSSEISELPEGTDVIIGGIITDIKKSTTKKGDPMMY 1007

Query: 1018 VTFSEPAKEYEANFF 1032
            +T  +     +   F
Sbjct: 1008 ITLDDMEGAIKCIAF 1022


>gi|152979519|ref|YP_001345148.1| DNA polymerase III subunit alpha [Actinobacillus succinogenes 130Z]
 gi|150841242|gb|ABR75213.1| DNA polymerase III, alpha subunit [Actinobacillus succinogenes 130Z]
          Length = 1158

 Score =  757 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1048 (38%), Positives = 593/1048 (56%), Gaps = 39/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+ HS +S+++G   +  ++     +   A+ +TD  N    ++F  +A +
Sbjct: 1    MTQ-PRFVHLRTHSDFSMIDGIAKVKPLVKACVREDMVAMGLTDFTNFCGLVKFYGEALS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G  + +                     + LL    EGY+ +  L+S+ Y    
Sbjct: 60   AGIKPIVGADVLVS----------SALCGDERFELTLLAKNNEGYKNITLLLSKAYQR-G 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL E   EGLI+L+GG  G I +    +    AE  L  ++K F +  Y+
Sbjct: 109  YDDLPYIDRDWLIE-HKEGLIILSGGRRGDIGQKLLKDKFADAESALGFYQKFFPNHFYI 167

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +L R   YD  R     + LA  H +PLVATN+ +FL  ED+EAH++ +A+     +   
Sbjct: 168  SLARVGHYDEERYIRAAMDLAKKHRIPLVATNDVVFLKTEDFEAHEIRVAIHDGYTLDDP 227

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  TP  Y ++  EM  +F+D+P ALENT+ IA+RC+  +++       +   +   
Sbjct: 228  KRPQLYTPQQYFRSEQEMCELFADIPTALENTLLIAQRCNVTIRLGQ-----YFLPQFPT 282

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L  +A  GLE RL          ++    Y +RL+ EL VI +M F GYFLI
Sbjct: 283  GELSTEDYLVKRAKDGLEERLEFLFPDPKVRSENRRKYDERLETELGVINQMGFPGYFLI 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 343  VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 402

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC + RD VI +V   YG   V+QIITFG++ AKA +RDVGR L   Y  VDR+ KL+
Sbjct: 403  VDFCMEGRDRVIDHVAETYGRSAVSQIITFGTMAAKAVIRDVGRVLGHAYGFVDRISKLV 462

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + + +EA  +D  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 463  PPDPGMTL-AKAFDMEPKLQEAYDSDEEVKELIDMARKLEGVTRNAGKHAGGVVISPTKI 521

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ +  R       
Sbjct: 522  TDFSPLYCDSEGRHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINARMVREGKP 581

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +V +  IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 582  EVRIESIPLDDPESFKLLLNSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 641

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  + P+L+ T GVI+YQEQVMQIAQ+L+GY+L
Sbjct: 642  LQSGMVDNFIDRKHGREEVSYPDAEYQHISLKPILESTYGVILYQEQVMQIAQVLAGYTL 701

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 702  GGADLLRRAMGKKKPEEMAKQRSVFEEGAVKNGIDGKLAMKIFDLVEKFAGYGFNKSHSA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K H+P EF+AA MT EMDN +KI     +  +  +++ PP +NT    
Sbjct: 762  AYALVSYQTLWLKAHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINTGKHH 821

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      +++A  +   F  L D C+RVD K++NRR  ESL
Sbjct: 822  FSVNDHGEIVYGIGAIKGVGEGPIEALVKARNEGGIFKDLFDLCARVDLKQINRRTFESL 881

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L ++L++  + +    K+      ++F     G    +       
Sbjct: 882  IKSGAFDKLGPHRAALAKNLEDALQSSNQFAKDEAIGQADMFGVLTAGHEEVERKYANTP 941

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                    + E+  LG Y S HP+  Y   L        ++ V   RG       ++VS 
Sbjct: 942  RWTEKQILDGERETLGLYLSSHPISRYLKELSHYTPNRLKDLVPNQRGQMTTACGLIVSS 1001

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KGSR+G  +  + +   +   F
Sbjct: 1002 RFAVTKKGSRLGIASLDDRSGRLDITLF 1029


>gi|313893027|ref|ZP_07826604.1| putative DNA polymerase III subunit alpha [Veillonella sp. oral taxon
            158 str. F0412]
 gi|313442380|gb|EFR60795.1| putative DNA polymerase III subunit alpha [Veillonella sp. oral taxon
            158 str. F0412]
          Length = 1135

 Score =  757 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1031 (35%), Positives = 600/1031 (58%), Gaps = 27/1031 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ +SLL+G   L +++ +     QPA+AITD  N+++A+ F ++  A G++PI
Sbjct: 4    FVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +                  +  ++LL  T EGY+ L+++VS+           R
Sbjct: 64   IGCEVYVTEHSRFDRPE--GRSRERLKHLILLAETMEGYRNLVKIVSKASTEGMLY-RPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 L++  ++G+I L+    G I +    ++ + A++ +  + + +G D  ++ +Q H
Sbjct: 121  ADRDLLRQY-SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEIQNH 179

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +  + + ++++L+  + L +VA+N+  ++ +ED +A D+ + ++     ++ DR + 
Sbjct: 180  GLTEEAKAQEELIKLSKEYGLGVVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDRLKF 239

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + YLK+  EM  +FS +P A+ENT++IA RC+         LP F   E +      
Sbjct: 240  PNDEFYLKSGDEMAQLFSHIPGAIENTLKIADRCNVEFNFDEHHLPHFDVPEGE----TS 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR            +     G  +++ ++RLD+EL+VI  M F  YFLIV D++++A
Sbjct: 296  KTYLRKVCER-------EIPRLYGETSEELQKRLDYELDVIGTMGFEDYFLIVWDYVRYA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++R
Sbjct: 349  REHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFCYEKR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             + I YV  KYG ERV+QIITFG+  A+A +RDVGR L +P ++V+R+ K+IPN+    +
Sbjct: 409  GKAIEYVTRKYGQERVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELGITL 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                       +    ADP+V  L +  +KLEG+ R++STHAAG+VI   PL   VP+  
Sbjct: 469  DKAL--QGKELKALYEADPNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHVPVQN 526

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
                   VTQ++   IE+ GL+K DFLGL+TLT++  +L  +   RG+ +DL  IP DD 
Sbjct: 527  ANDEGF-VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDDK 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664
                +LT   T G+FQLES G+ + +  ++P+  ED+I LV+LYRPGP+ + +   + +R
Sbjct: 586  AACDILTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFIDR 645

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++GK+++  +HP+++P+LK+T GVI+YQEQVMQIA  + G+SL +AD++RRAMGKK +  
Sbjct: 646  RHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKESV 705

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +  Q+E FI G+  NGI ++IA  +F+LL  FA YGFNKSH+AAYA I+YQTA++K HY 
Sbjct: 706  LKAQRESFIQGSINNGIEESIANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKAHYF 765

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EF+AA+MT  M N++K+  +    ++ N++++ P +N     F V  + I + L  IK 
Sbjct: 766  PEFMAATMTSFMQNMQKLTYYINACKKHNVKVLGPDINYSERSFAVQGDAIRFGLGGIKN 825

Query: 845  VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG      ++        +  + DFC RVD+K +N+R+LESL+  GA+D F  +R QLL 
Sbjct: 826  VGDNAIDRLIRERNEHGLYTDIVDFCKRVDNKVVNKRLLESLIRCGAMDGFKENRNQLLH 885

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
              ++ Q      +K+      ++F   + +  D I +      +   + ++E+   GFY 
Sbjct: 886  MYESAQAVGAKEQKDAAMGTMSLFGDIEESV-DFIAVPNVEDLSEDDKLKDEKEYTGFYI 944

Query: 964  SGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            +GHPL  Y   L  +  +    E+     G  I    ++ +K  + TR+   +  +   +
Sbjct: 945  TGHPLQGYAKELEGLFELGALVENPEQYDGQTITFGGLIENKTDRMTRRNEVMSILRIED 1004

Query: 1023 PAKEYEANFFP 1033
             +       FP
Sbjct: 1005 YSGAANVVAFP 1015


>gi|300023432|ref|YP_003756043.1| DNA polymerase III subunit alpha [Hyphomicrobium denitrificans ATCC
            51888]
 gi|299525253|gb|ADJ23722.1| DNA polymerase III, alpha subunit [Hyphomicrobium denitrificans ATCC
            51888]
          Length = 1180

 Score =  757 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 524/1050 (49%), Positives = 697/1050 (66%), Gaps = 26/1050 (2%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             K+P FVHL+VHS+YSLLEGAL +  +     A Q PA+ +TD+NN F ALEFS K   A
Sbjct: 7    AKAPQFVHLKVHSAYSLLEGALPIAKLAKLAEAMQLPALGLTDSNNFFGALEFSDKLWGA 66

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS------IVLLVSTAEGYQRLIELVSRM 119
            G+QPI G  LD+D  DN              P       I LL  TA+G+  L+ L   +
Sbjct: 67   GVQPIAGGSLDVDFGDNRDAQPSALRSLSNEPRSKPAGKIALLAMTADGFANLMRLSKAL 126

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            Y      +   + ++ ++E  +EG+I LTGG  GPID A       +A +R+ T +K+FG
Sbjct: 127  YFEAAADEPAHVKIARIEEF-SEGIIALTGGPQGPIDSALRDGQHDLALERIKTLEKIFG 185

Query: 180  DRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            DRLYV +QRH   +    E  ++ LAY   +P+VATN   F    DYEAHDVL+ +A   
Sbjct: 186  DRLYVEVQRHGLPEEADVEPDLLDLAYARRIPIVATNECYFAQRGDYEAHDVLLCIADGR 245

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
             V + +R R +P+HYLK  +EMVS+F+DLPEAL NTVEIA RC+   +   PILPRF++ 
Sbjct: 246  YVVEDNRRRASPEHYLKTEAEMVSLFADLPEALANTVEIAMRCTARPEGRKPILPRFVKA 305

Query: 299  ECDDIQKE----EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            +    + E    E  EL+ +A  GL  RLA    A G+  +DY +RL +E++VI +MKF 
Sbjct: 306  DDSLSEIENFRLEAAELKAQAKDGLARRLAAHGPAAGFTVEDYEKRLVYEIDVITQMKFP 365

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIVADFI+W+K N +PVGPGRGSGAGS+ AYALTITD+DPL+F LLFERFLNP+R+S
Sbjct: 366  GYFLIVADFIKWSKANGVPVGPGRGSGAGSLVAYALTITDLDPLQFGLLFERFLNPERIS 425

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFD+DFCQ++RD VI YVQ KYG +RVAQIIT G LQA+A LRDVGR LQMPY QVDR
Sbjct: 426  MPDFDVDFCQEKRDRVIDYVQKKYGDDRVAQIITHGKLQARAVLRDVGRVLQMPYGQVDR 485

Query: 475  LCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            LCKL+PN+PA+PV+  QAI  + + +E R  +P V RLLEI+QKLEGLYRHASTHAAG+V
Sbjct: 486  LCKLVPNNPANPVTLAQAIEGEPKLQEERDREPIVARLLEIAQKLEGLYRHASTHAAGMV 545

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
            IGDRPL +LVP+YRD +S  P+TQ+N K +E AGL+KFDFLGLKTLT+L+K++  ++Q R
Sbjct: 546  IGDRPLEELVPLYRDPKSHFPITQYNWKMVEAAGLVKFDFLGLKTLTVLEKAVKLISQVR 605

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            GV VDL  +P DD  TY +L    T G+FQLES+GMR++L+ ++PD  EDIIA+V+LYRP
Sbjct: 606  GVTVDLPSLPLDDKPTYDMLAKADTAGVFQLESTGMRESLKRLKPDRFEDIIAMVALYRP 665

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP+DNI  Y NRK+G+E +  +H ++  +LKET GVIIYQEQV+QIAQ++ GY+L +AD+
Sbjct: 666  GPMDNIPTYINRKHGEEPVDYLHDMLQGILKETYGVIIYQEQVIQIAQVMGGYTLGQADM 725

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK K EM KQ+ RF+ GA   G+ K  A  IFEL+ KFA YGFNKSHAAAYA++
Sbjct: 726  LRRAMGKKDKAEMAKQQARFVEGAVAKGVKKEEAKYIFELVDKFAGYGFNKSHAAAYALV 785

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SY TA++K ++  EF AASMTL+M N +K+  F  +AR+  I+++PP VN   VDF V  
Sbjct: 786  SYHTAYLKANFREEFFAASMTLDMGNTDKLAMFASEARKSGIRMLPPCVNQSAVDFGVEP 845

Query: 833  -------NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLES 884
                     I YSLAA+K +G      I+        F SL DF  RVD+K LN+R +E+
Sbjct: 846  AAEGAKHGAIRYSLAALKNIGAGAVETIVNERNEKGAFKSLADFAERVDAKALNKRAIET 905

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L   GA D F   R ++  + D I   AQ    N      ++F    G  + ++ L    
Sbjct: 906  LAKGGAFDAFNNDRARVAANADTILASAQRRTANEAQGMTDLFG--SGGKAAELVLRSAE 963

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT-IRGNNI-RLAAMVV 1002
                  R   E   +GFY SGHPLD Y  +L K+G++ + E      RG    RLA +V+
Sbjct: 964  GWTPMERLAAEFEAIGFYLSGHPLDQYDHVLSKLGVRKFTEFEVLTERGATAGRLAGVVI 1023

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + ++++++KG++  + +FS+   ++EA  F
Sbjct: 1024 AARERRSQKGNKFAFASFSDATGQFEAVIF 1053


>gi|330432398|gb|AEC17457.1| DNA polymerase III subunit alpha [Gallibacterium anatis UMN179]
          Length = 1177

 Score =  757 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1052 (39%), Positives = 613/1052 (58%), Gaps = 40/1052 (3%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            L + +  +P FVHL+VHS +S+++G   +  ++D+ A  Q  A+A+TD  N    ++F  
Sbjct: 17   LGKIMS-APKFVHLRVHSDFSMIDGLPKVKTLVDECAKQQMVAMALTDFTNFCGLVKFYG 75

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
                 G++PI+G  + ++ ++                S+ LL     GYQ +  L+SR Y
Sbjct: 76   ATLGKGVKPIVGADVLVNSEE----------LADEPFSLTLLAKNNAGYQNITLLLSRAY 125

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 +    I   WL E   EG+I+L+GG  G + +     +   AE  L  +++ F D
Sbjct: 126  QRGYREY-PMIDREWLIE-HAEGIIILSGGKDGDVGKFLVRGNQNAAENCLAFYQRYFPD 183

Query: 181  RLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ + R    D     Q+ V LA  H++PLVATN+ +FL EED+EAH++ +A+     
Sbjct: 184  HFYLAISRTGRNDEEHYLQLAVNLAEQHQIPLVATNDVMFLCEEDFEAHEIRVAIHDGYT 243

Query: 240  VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +   +RP+  +P  Y ++  EM  +F+DLP+ALEN+V IA+RC+  +++           
Sbjct: 244  LDDPNRPKKYSPQQYFRSEQEMCELFADLPQALENSVYIAQRCNVTIRLGQYF-----LP 298

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSG 355
            +        E+ L  +A  GLE RLA     +    Q    Y +RL+ EL VI +M F G
Sbjct: 299  QFPTGDLSTEDYLIQQAKTGLEQRLAVLFPDEQERQQKRAKYDERLETELKVINQMGFPG 358

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV +FIQW+K NNIPVGPGRGSGAGS+ AY++ ITD+DPL+F LLFERFLNP+R+SM
Sbjct: 359  YFLIVMEFIQWSKDNNIPVGPGRGSGAGSLVAYSIRITDLDPLQFDLLFERFLNPERVSM 418

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFD+DFC D RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+
Sbjct: 419  PDFDVDFCMDGRDRVIEHVAQMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRI 478

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             KLIP DP   +  +A   + +  EA  +D  V  L+++ +KLEG+ R+A  HA G+VI 
Sbjct: 479  AKLIPPDPGMTL-QKAFDAEPKLVEAYNSDEEVKELIDMGRKLEGITRNAGKHAGGVVIS 537

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
               ++   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT++Q ++D + +R  +
Sbjct: 538  PSKITDFSPIYCDSEGKHPVTHFDKSDVEYAGLVKFDFLGLRTLTIIQWAVDMINERMRR 597

Query: 596  -----VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +D+  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+
Sbjct: 598  EGKPEIDIHHIPLDDEKSFKLLLDAQTTAVFQLESRGMKDLIRRLKPDCFEDIIALVALF 657

Query: 651  RPGPIDNIVVYNNRKNGKEK-------IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            RPGP+ + +V N  +    +           H  + P+L  T G+I+YQEQVMQIAQ+L+
Sbjct: 658  RPGPLQSGMVDNFIRRKHGEEEISYPDAEYQHQSLKPILDPTYGIILYQEQVMQIAQVLA 717

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            GY+L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFNK
Sbjct: 718  GYTLGGADLLRRAMGKKKPEEMAKQRSVFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNK 777

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAYA++SYQT W+K H+P EF+AA MT EMD VEKI  F  ++ +  ++++PP +NT
Sbjct: 778  SHSAAYALVSYQTLWLKAHFPAEFMAAVMTSEMDKVEKIVNFYDESLRMGLKVVPPDINT 837

Query: 824  PCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881
                F V +   I Y L AIKGVG     +I+EA  +   F  L D C+RVD +K+NRR 
Sbjct: 838  GKYGFSVNEKGEIVYGLGAIKGVGEAPVENIIEARTSGGLFRDLFDLCARVDLRKINRRT 897

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITL 940
             ++L+ AGALD  G  R  +  +L++  K +    K+      ++F     +    +   
Sbjct: 898  FDNLIKAGALDKLGPHRAAIALNLEDALKASDQHAKDEALGQTDMFGVLASSPKQVEQAY 957

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                     +  + EQ  LG Y S HP+  Y   L         E   T RG +  ++ +
Sbjct: 958  ANTPKWTEKMVLDGEQETLGLYLSSHPISRYLKELSHYSN-RLSEVSVTRRGESCTVSGL 1016

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            VV+ +   T++G+R+G +T  + +   +   F
Sbjct: 1017 VVNFRSLVTKRGNRLGILTLDDRSARMDITLF 1048


>gi|315499828|ref|YP_004088631.1| DNA polymerase iii, alpha subunit [Asticcacaulis excentricus CB 48]
 gi|315417840|gb|ADU14480.1| DNA polymerase III, alpha subunit [Asticcacaulis excentricus CB 48]
          Length = 1142

 Score =  757 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 514/1035 (49%), Positives = 678/1035 (65%), Gaps = 26/1035 (2%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL+V S+YSLLEGA+   ++    A  + PAIAI D  NLF ALEFSQ     G+
Sbjct: 2    SDGFVHLRVRSAYSLLEGAIKAYDMGKLAAKAKMPAIAICDRANLFGALEFSQVCKDTGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            QPII C L +            KTP      IVL+V   +GY  L EL S+ YL  +   
Sbjct: 62   QPIIACALPVKGIGGTLSDRWAKTPT-----IVLIVQNEQGYLNLTELSSKAYLDIEATD 116

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +    + +   EGLI+L+GG  GPI+  F  N    A   L      FGDR Y+ LQ
Sbjct: 117  EPHVLWEEVVKR-AEGLILLSGGPDGPINPLFKQNQPDEANAALKDMHAAFGDRFYIELQ 175

Query: 188  RH------RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            RH             ES +VQ AY H +PLVATN++ F   + ++AH+ L+ ++ ST + 
Sbjct: 176  RHDGSPHGGIRGDSAESGLVQFAYAHGVPLVATNDAYFADRDMFKAHEALLCISDSTFMG 235

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              DR +VT DH+LK    M  +FSDLPEA +NT+EIARRC+F++    PILPRF      
Sbjct: 236  VADRRKVTKDHWLKPPLLMREVFSDLPEACDNTLEIARRCAFLVSKRDPILPRFDT---- 291

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               + E+ EL  +A  GL++RL Q   A     +DY  RLD E+ VI +M F GYFLIV+
Sbjct: 292  GAGRSEDEELAFQAREGLKMRLQQVEPAF--PEEDYWARLDREVGVIQKMGFPGYFLIVS 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK ++IPVGPGRGSGAGS+ A+ALTITD+DPLRF LLFERFLNP+R+SMPDFDID
Sbjct: 350  DFIKWAKAHDIPVGPGRGSGAGSLVAWALTITDLDPLRFGLLFERFLNPERVSMPDFDID 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ+RR+EVI YVQ KYG ERVAQIITFG+LQA+A LRD GR +Q+P  QVDRLCK++PN
Sbjct: 410  FCQERREEVITYVQEKYGRERVAQIITFGTLQARAVLRDTGRVMQLPLGQVDRLCKMVPN 469

Query: 482  DPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +PA+P +  QA+  + R REAR  + SV +LL+ + KLEGLYR+ASTHAAGIVIGDR L+
Sbjct: 470  NPANPTTLAQAVEIEPRLREARDEEESVAKLLDTALKLEGLYRNASTHAAGIVIGDRSLT 529

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVP+YRD RSD+P TQFNMKW+E AGL+KFDFLGLKTLT L ++  +L +RG++VD S 
Sbjct: 530  ELVPLYRDPRSDIPATQFNMKWVESAGLVKFDFLGLKTLTTLNRAWHYLKKRGLEVDFST 589

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  TY LL +  ++G+FQLES GMR  L  M+   IE+I AL+SLYRPGP+DNI  
Sbjct: 590  LPLDDKITYELLASGQSIGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMDNIDT 649

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y +RK G+  I  +HP ++P+L+ET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKK
Sbjct: 650  YVDRKFGRADIDMLHPSLEPVLRETYGVIIYQEQVMQIAQILSGYSLGEADLLRRAMGKK 709

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             KEEMD QK RFISGA + G+ +  + +IFEL+ KFA YGFNKSHAAAYA ISYQT W+K
Sbjct: 710  KKEEMDLQKARFISGAKEKGVPEKQSDSIFELVNKFAGYGFNKSHAAAYAFISYQTGWLK 769

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             ++PVEF AA+M+L++ N +K+  F QDARQF + I PP +N    DF V +  + Y+L 
Sbjct: 770  ANHPVEFFAANMSLDITNTDKLAVFYQDARQFGVTIRPPDINRSKADFDVENGEVLYALG 829

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AI+ VG      ++    A  PF  + DF  R+D K +N+R +E+L  AGA D    +R 
Sbjct: 830  AIRNVGLEAMHSVVAVREAGGPFKDIFDFLERIDPKAVNKRAIENLARAGAFDSIHPNRA 889

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            Q++QS D +  +AQ +   R +   ++F     +   +  L      +     + E   +
Sbjct: 890  QIIQSADLLIAHAQSMAAERASAQVSLFGTNDSS---RPRLPNIPKASGPDALDEELSAV 946

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNI-RLAAMVVSKQQKKTRK-GSRIG 1016
            GFY SGHPL     + ++  +  Y E++A    G    R+A +V  +Q++ + + G +  
Sbjct: 947  GFYLSGHPLQDMVDVFKRRNVTLYAEALALAQEGREAFRMAGVVRRRQERASARTGEKFA 1006

Query: 1017 WVTFSEPAKEYEANF 1031
            +V  S+P+ EYE  F
Sbjct: 1007 FVNLSDPSGEYEVMF 1021


>gi|221211665|ref|ZP_03584644.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD1]
 gi|221169026|gb|EEE01494.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD1]
          Length = 1179

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1044 (39%), Positives = 608/1044 (58%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F ++A +
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   KGVKPIAGCDVWITNPDDRDKP----------SRLLLLVKNKRGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +   WL+   +EGL+ L+G   G I  A    + + A +    + K+F    Y+
Sbjct: 110  YRGRAELDARWLEGELSEGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAKVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q   LA + +LP+VAT+ + F++++D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T + Y + + EMV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   
Sbjct: 230  RRQKRFTTEQYFRTQDEMVALFADLPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GLE    +L      +      Y +RL+FE   I +M F GYFLI
Sbjct: 290  L----DDYLIQLSKEGLEKRLVQLYPDEAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV++KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKDKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKAD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              LS +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLSQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+S+  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMVKHREIFAEGAAKNGLSREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---D 832
            TAW+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+     D
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCIMNNLVVLPPDINQSHYRFEPVAEPD 825

Query: 833  NR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             +    I Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ A
Sbjct: 826  GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRIVNRRTVEALIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R QLL S+          +         +F     +      L      + 
Sbjct: 886  GAFDSLNANRAQLLASVP--LAMEAAEQAEANALQAGLFDMGAES-PHAHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + + 
Sbjct: 943  KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKIGELKEGRDK---LVAGIIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MLIALLDDGTGQCEITIF 1022


>gi|293394718|ref|ZP_06639010.1| DNA-directed DNA polymerase III alpha subunit [Serratia odorifera DSM
            4582]
 gi|291422844|gb|EFE96081.1| DNA-directed DNA polymerase III alpha subunit [Serratia odorifera DSM
            4582]
          Length = 1172

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 422/1053 (40%), Positives = 607/1053 (57%), Gaps = 41/1053 (3%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            Q + + P F+HL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A
Sbjct: 9    QDMAE-PRFIHLRVHSDYSMIDGLAKVGPLVKRAAALAMPALAITDFTNLCGLVKFYGSA 67

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              AGI+PIIG    +          Q       +  + +L +  +GYQ L  L+SR Y  
Sbjct: 68   HGAGIKPIIGADFHV----------QSDVLGDELAQLTVLAANNDGYQNLTLLISRAYQR 117

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
              G     I   WL E   EGLI+L+GG  G + +     +    E+ L  +++ F D  
Sbjct: 118  GYGAAGPIIDRDWLVE-HREGLILLSGGRMGDVGKFLLRGNHAQVEQCLAFYQQYFPDNY 176

Query: 183  YVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ L R    D        V LA   +LP+VATN+  FL E+D++AH++ +A+     + 
Sbjct: 177  YLELIRTGRPDEENYLHAAVALATERDLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLD 236

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               RPR  +P  Y++N  EM  +F+D+PEAL N+VEIA+RC+  +++       +   + 
Sbjct: 237  DPKRPRNYSPQQYMRNEDEMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQF 291

Query: 301  DDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                   E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYF
Sbjct: 292  PTGDMTTEDFLVAKSKEGLEERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYF 351

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV +FIQW+K NN+PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPD
Sbjct: 352  LIVMEFIQWSKDNNVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPD 411

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFC ++RD VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ K
Sbjct: 412  FDVDFCMEKRDLVIEHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISK 471

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L+P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI   
Sbjct: 472  LVPPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPT 530

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             ++   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K D
Sbjct: 531  KITDFAPLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINKRRAKTD 590

Query: 598  LSL-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            L       IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RP
Sbjct: 591  LPPIDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRP 650

Query: 653  GPIDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +V       +   +     I   H  + P+L+ T G+I+YQEQVMQIAQ+L+GY
Sbjct: 651  GPLQSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGY 710

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK   EM KQ+  F  GA   GI   +++ IF+L+ KFA YGFNKSH
Sbjct: 711  TLGGADMLRRAMGKKNPVEMAKQRGGFEDGAKARGIDGELSIKIFDLVEKFAGYGFNKSH 770

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+  
Sbjct: 771  SAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQ 830

Query: 826  VDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS---ADKPFDSLEDFCSRVDSKKLNRRV 881
              F V  D  I Y + AIKGVG      I+EA        F  L D C+R D KKLNRR+
Sbjct: 831  YHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARSDIKKLNRRI 890

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITL 940
            LE L+ +GA D  G  R  L+ SL +  K A    K       ++F    +     + + 
Sbjct: 891  LEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSY 950

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAA 999
               +     V  + E+  LG Y +GHP+  Y   + +  G +  ++   T RG       
Sbjct: 951  ANVAPWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVG 1010

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 1011 LVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1043


>gi|261855201|ref|YP_003262484.1| DNA polymerase III subunit alpha [Halothiobacillus neapolitanus c2]
 gi|261835670|gb|ACX95437.1| DNA polymerase III, alpha subunit [Halothiobacillus neapolitanus c2]
          Length = 1168

 Score =  756 bits (1952), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/1055 (37%), Positives = 593/1055 (56%), Gaps = 51/1055 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL +H+ +SL++G L +  +L        PA+A+TD  NLF+ ++F + A  +GI+P
Sbjct: 2    SFVHLHLHTEFSLIDGTLRIKPMLAAAKERGLPALALTDQANLFAMVKFYEAARKSGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G    +  +           P  T   +VLL     G++ L EL+SR Y   Q +   
Sbjct: 62   ILGADCLVVDE-----------PGSTPYRVVLLAQNNLGFRHLTELLSRGYCEGQIQDRP 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             +   WL +    GLI L+GG  G I +      ++  +  +  + + F DR Y+ L R 
Sbjct: 111  MLRREWLTQEQCAGLIALSGGHLGEIGQLLLHGKARERKAAIKFWTERFPDRFYLELTRC 170

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R  +       V+LA   +LP+VATN+  FL +E++EAH+V + +    V+    RP  
Sbjct: 171  GRPDEEKYLHAAVELAEQAQLPVVATNDVRFLDQENFEAHEVRVCIQQGRVLDDPRRPHD 230

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T   YL+   EM ++F+D+PEA+EN++ +A RC+  LQ+    LP F     +     E
Sbjct: 231  YTALQYLRPADEMQALFADIPEAIENSLAVAERCNVTLQLGKNFLPNFPTPNGE----TE 286

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR  +  GL  R  +         + YR+RL+ EL+VI +M FSGYFLIVADFIQWA
Sbjct: 287  ADYLRTLSEQGLAHRFERVP---AEQHEAYRERLNIELDVIIQMGFSGYFLIVADFIQWA 343

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+  IPVGPGRGSGAGS+ A+AL ITDIDP+ + LLFERFLNP+R+SMPDFDIDFC + R
Sbjct: 344  KRQGIPVGPGRGSGAGSLVAWALLITDIDPIPYDLLFERFLNPERVSMPDFDIDFCMEGR 403

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI YV  +YG   V+QI T G++ AKA +RDVGR +  PY  VDR+ KLIP  P   V
Sbjct: 404  DRVIDYVAERYGRAAVSQIATHGTMAAKAVVRDVGRVMSYPYGFVDRIAKLIPMKPGLDV 463

Query: 488  SLQAI------------ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            +L+                   FR+    D  V  ++++   LEGL R+   HA G+VI 
Sbjct: 464  TLEDALGRTERSQKEQERFSQEFRDLYERDEEVRAIVDMGMALEGLSRNVGKHAGGVVIA 523

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV- 594
               L+   PMY +       +Q +   +E  GL+KFDFLGL+ LT++  +L  +      
Sbjct: 524  PSKLTDFTPMYCESNGASAASQLDKDDVEAVGLVKFDFLGLRNLTIIDWALGSINATRQK 583

Query: 595  ----KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 VD+++IP DD  +++LL    T  +FQLES GM+  +  +QPD  EDIIALV+L+
Sbjct: 584  VGKEPVDITVIPLDDKPSFNLLKRCETTAVFQLESRGMKDLIRRLQPDTFEDIIALVALF 643

Query: 651  RPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+ + +V +     K  +KI  +HP +  +LK T GVI+YQEQVMQIAQ+L+GY+L 
Sbjct: 644  RPGPLQSGMVDDFILRKKGEQKIEYLHPWLTDVLKPTYGVIVYQEQVMQIAQILAGYTLG 703

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+E F+ GA    +  T A  IF+L+ KFA YGFNKSH+AA
Sbjct: 704  GADLLRRAMGKKKPEEMAKQREIFLEGAKSKQVDPTQAGYIFDLMEKFAGYGFNKSHSAA 763

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+++YQTAW+K HYP  F+AA ++ +MDN +KI     + ++  + ++PP VN     F
Sbjct: 764  YALVAYQTAWLKAHYPAHFMAAVLSADMDNTDKIVGLIGECQRMGLNVIPPDVNHCAYKF 823

Query: 829  KV-GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLV 886
            +   ++ + Y L AIKGVG    + I+E      PF  + DFC RV S+ LN+RVLE++V
Sbjct: 824  QALDEHTVVYGLGAIKGVGEGVIQKIVEERQAGAPFVDMNDFCHRVGSQALNKRVLEAMV 883

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSV 945
             AGALD  G +R  L   + +  K A  ++        ++F   +    + ++ +     
Sbjct: 884  LAGALDTLGPNRASLFAHIPDAMKAASQIQAAEAAGMGDLFGGFDAPETAIRVPIPALEP 943

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT---------IRGNNIR 996
               + +   E+  LG Y +GHP+  ++  L+ +        +            +G  + 
Sbjct: 944  WPDAEQLRKEKDTLGLYLTGHPIHAFRDELKSLVSDTLSGLLDKLDIPAPGTFPKGVPVT 1003

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +A + ++++  + + G R  ++T  +     E   
Sbjct: 1004 VAGLAIAERIVRQQNGDRQLFLTLDDGEGRCEVRI 1038


>gi|51598831|ref|YP_073019.1| DNA polymerase III subunit alpha [Borrelia garinii PBi]
 gi|51573402|gb|AAU07427.1| DNA polymerase III, subunit alpha [Borrelia garinii PBi]
          Length = 1147

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1035 (38%), Positives = 610/1035 (58%), Gaps = 23/1035 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F+HL VHS YSLL+GA  +++I+ K        IA+TD  NLF A++F ++A  
Sbjct: 1    MSFKAKFIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG +  +         +           ++LL     GY+ L++L S  YL + 
Sbjct: 61   AGIKPIIGIEAYMAKTSKFFKKHDDLGKMS--YHLILLAKNEIGYKNLLKLTSISYL-EG 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L++  +EGLI  +    G I R    N  + A+  +L FKK+FG+  Y+
Sbjct: 118  FYYRPRIDKEDLEKY-SEGLICTSACIGGLIPRLILGNRFEDAKNEILWFKKVFGNDFYL 176

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   D+     ++V+ +    +PL A N+S +++ ED  A D+++ +      S +
Sbjct: 177  ELQRHGIKDQDIVNERLVEYSRELGVPLTAANDSHYVNREDAIAQDIIVCIGTGAKKSDE 236

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEI-ARRCSFILQVHAPILPRFIEKECD 301
            +R ++ T + Y+K++ EM  +F+DLPEALENTV I  +   F +    PILP +      
Sbjct: 237  NRLKMETNEFYIKSQEEMCELFNDLPEALENTVRIAEKCDDFKITFPGPILPDYQIPIEF 296

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            +        L    + GL+                 + R  +EL+VI RM F GYFLIV 
Sbjct: 297  N---TLGEYLEYLTLEGLK-------FRYKTLTSKIKDRAFYELSVIIRMGFEGYFLIVW 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++A  N+IPVG GRGSGAGS+ AYAL ITDIDPL+++LLFERFLNP+R+SMPDFDID
Sbjct: 347  DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 406

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC + RDE+I+YV NKYG ++VAQIITFG+L+ KA ++DV R L +P+++ + L KLIP+
Sbjct: 407  FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKLIPD 466

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P   VSL+ + DD+  +E   + P    L++ +  LEG+ RHASTHAAGIVI   PL+ 
Sbjct: 467  GP--KVSLKEVLDDNSLKEYFTSKPVYKELMDAALVLEGMNRHASTHAAGIVISKTPLTD 524

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
             VP+Y+D +     TQ+ M  +E+ GL+K DFLGLKTLTL++ + + +        +  I
Sbjct: 525  YVPLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIRSVNPDFKIKNI 584

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P +D +T+ +L    +  +FQ ES GM+Q L+  +PD IED+IAL +LYRPGP+  I  +
Sbjct: 585  PDNDVKTFKMLGEGKSASVFQFESEGMQQILKDAKPDNIEDLIALNALYRPGPMQFIPQF 644

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               K G + I   HP +  +LK T GVI+YQEQVM++A+++ G+SL +AD+LRRAMGKK 
Sbjct: 645  IAAKKGVKSIKYPHPDLKEVLKPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKKK 704

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            ++EMD+ K  F+ GA + G  K +A  IFELL  F+ YGFNKSHAAAY++I+YQTA++K 
Sbjct: 705  EDEMDEMKVDFLRGAIEKGYDKEVASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLKA 764

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +YP  F+AA++T E++N +K+  + ++++   I ++ P +N    +F+V D+ I Y L A
Sbjct: 765  NYPQYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFKEFRVTDSGISYGLNA 824

Query: 842  IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK +G      I++    +  + S E+F  RVD K +N++ LES + +G  D    +R  
Sbjct: 825  IKNLGEIVVDLIIDEREKNGKYSSFENFIRRVDDKVINKKFLESAIKSGLFDSLDQNRKT 884

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVENSSVRFENEQRV 958
            L ++LD + +     + N+     ++F   KG          + F   + S   E E+ +
Sbjct: 885  LFENLDRLIEVVSEDKNNKKLGQNSLFDVLKGQNPIHQNFNYQAFKEYSYSELLEFEKEL 944

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGW 1017
            LGFY SGHPLD YK  +         + +AT + + ++ + ++ S +  +T++ + ++ +
Sbjct: 945  LGFYVSGHPLDPYKKAINSFSSLNVLKDLATKKDSIVQFSGILNSVKVIQTKRNNAKMAF 1004

Query: 1018 VTFSEPAKEYEANFF 1032
                +     +   F
Sbjct: 1005 GVIEDFKGAIDIVVF 1019


>gi|323170976|gb|EFZ56625.1| DNA polymerase III subunit alpha [Escherichia coli LT-68]
          Length = 1140

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1028 (40%), Positives = 603/1028 (58%), Gaps = 38/1028 (3%)

Query: 26   ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKM 85
                  ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++        
Sbjct: 1    MAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV-------- 52

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
              Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  EGLI
Sbjct: 53   --QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-NEGLI 109

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLA 204
            +L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        V+LA
Sbjct: 110  LLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELA 169

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSI 263
                LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  EM  +
Sbjct: 170  EARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCEL 229

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GLE RL
Sbjct: 230  FADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGLEERL 284

Query: 324  A---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
            A        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGS
Sbjct: 285  AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 344

Query: 381  GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
            GAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG 
Sbjct: 345  GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 404

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + +  E
Sbjct: 405  DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPE 463

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
               AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+ 
Sbjct: 464  IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 523

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHLLTTK 615
              +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +L   
Sbjct: 524  SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 583

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVS 673
             T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E+I  
Sbjct: 584  ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 643

Query: 674  -----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
                  H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EEM KQ
Sbjct: 644  PDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQ 703

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+
Sbjct: 704  RSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 763

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGT 847
            AA MT +MDN EK+     +  +  ++I+PP +N+    F V  D  I Y + AIKGVG 
Sbjct: 764  AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGE 823

Query: 848  TTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL 
Sbjct: 824  GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 883

Query: 907  NIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +  K A    K       ++F    +     + +          V  + E+  LG Y +G
Sbjct: 884  DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 943

Query: 966  HPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            HP++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + +
Sbjct: 944  HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1003

Query: 1025 KEYEANFF 1032
               E   F
Sbjct: 1004 GRLEVMLF 1011


>gi|301167724|emb|CBW27308.1| DNA polymerase III alpha subunit [Bacteriovorax marinus SJ]
          Length = 1215

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1067 (34%), Positives = 592/1067 (55%), Gaps = 43/1067 (4%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
                SFVHL +H+ YSLL+GA+ L +++        PAIA TD  N+F A++F ++  +A
Sbjct: 19   THPNSFVHLHLHTQYSLLDGAIRLKDLIPAAKEMGVPAIAQTDHGNMFGAIDFYKRCKSA 78

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPT----------VPSIVLLVSTAEGYQRLIEL 115
            GI+PI+G ++           +  ++   +          +  ++LL     GYQ L +L
Sbjct: 79   GIKPILGSEIYFTPGSRFDRKSARRSARVSNQDEEESNHHIHHLILLAKNNIGYQNLCKL 138

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +SR YL +      R  +  L+E  +EGLI  T    G +   FF    + A + +   +
Sbjct: 139  LSRAYL-EGFYYKPRADIELLKEY-SEGLICTTACLKGEVGYNFFTGQDEKAVRAIEKLQ 196

Query: 176  KLFG-DRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            ++FG +  Y+ +Q +   ++     +V++ A   ++ +VATN++ +++ ED  A +VL+ 
Sbjct: 197  EVFGYEDFYLEIQENGIPEQADVNRKVLEYAKEKKVKVVATNDAHYMTPEDATAQEVLLC 256

Query: 234  VAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL--QVHAP 290
            +      + ++R ++ + + Y K+  +M   F   PEA + T+EIA +C+  L       
Sbjct: 257  IQTGKSFADENRMKMTSQEFYYKSPEKMREQFHYAPEACDATLEIADKCNVELNWTDEQG 316

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI--------AKGYHAQDYRQRLD 342
                 +     D  + E++  R     GLE R               K      Y +RL 
Sbjct: 317  NQIYHLPDYPIDTGETEDDYFRRMCKEGLEERFRGPHFTKLVSEDNWKAELEPKYWERLK 376

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +E+++I  M F GYFLIVADFIQW+K N IPVGPGRGSGAGS+ AYA+TIT+IDPL ++L
Sbjct: 377  YEVDMIIEMGFPGYFLIVADFIQWSKNNGIPVGPGRGSGAGSLAAYAMTITNIDPLPYNL 436

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERF+NP+R+SMPDFD+DFCQ  R  VI YV  KYG E+V QIITFG LQAKA ++DV 
Sbjct: 437  LFERFINPERISMPDFDVDFCQAGRQRVIEYVTEKYGEEKVGQIITFGKLQAKAVVKDVS 496

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            R   + +++ + L KLIP++    +  +AI  + + +E    D  + ++  IS++LEGLY
Sbjct: 497  RVFDLSFAEANMLSKLIPDELGINLE-KAIEMEPKIQELIDTDSKIRQIFTISRRLEGLY 555

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            RHA  HAAG++I  +PL +  P+++  + +  V  F+  + E+ GL+KFDFLGLKTLT++
Sbjct: 556  RHAGIHAAGVIITSKPLVEYCPLFKGAKGEKVVQ-FDKDFSEEIGLVKFDFLGLKTLTVI 614

Query: 583  QKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              +  F         D+  I ++D + Y  +    T+G+FQLESSGM    + + PD I+
Sbjct: 615  DYASKFVQRDHVKDFDIEEIDYEDKKVYDFIGDGNTIGVFQLESSGMIDLCKRIMPDSID 674

Query: 642  DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DI A+ +LYRPGP+       +   K+G++K       + P+LK+T G+I+YQEQVM IA
Sbjct: 675  DITAINALYRPGPMGSGMHDQFVEIKHGRQKEHYAFEELRPLLKDTYGIIVYQEQVMNIA 734

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            ++L+GY+L +AD+LR+AMGKK    +++ +E F+ GA++ G     A  +++L+A FA+Y
Sbjct: 735  RVLAGYTLGQADILRKAMGKKKIALIEEHREIFLKGAAERGFDVEKAGELYQLMASFAEY 794

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSHA AY+ IS+QTA++K +YP  F A  ++ E+ N +K+  +  DA+   ++++PP
Sbjct: 795  GFNKSHAVAYSYISFQTAFLKYYYPACFFAGLLSTELSNTDKVTVYINDAKNHGVEVLPP 854

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTT-ARHIMEASADKPFDSLEDFCSRVDSKKLN 878
             VN     F V    I + + AIK VG       + E   + PF    DFC+RV  K +N
Sbjct: 855  DVNESLWLFNVIGQNIRFGMGAIKNVGENAVEELVREREENGPFKGFIDFCTRVSLKIVN 914

Query: 879  RRVLESLVFAGALD--CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             RV+ESL+  GA D      +R  +L++ + I  YA+ ++  +     ++F     +  D
Sbjct: 915  NRVIESLIKVGAFDECETKLNRKTMLENAELIVTYAKKLQHEKELGQVSLFDMGGSSSDD 974

Query: 937  KITLEKFS--------VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
              + +             +   +   E +++G Y SGHPLD Y  I+ K+       +  
Sbjct: 975  DGSNDPMKMLDIQITNDFDDREKLAYEAQLMGIYVSGHPLDRYSDIMGKLASMDIAAARD 1034

Query: 989  TI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    + LA ++  K+   T+KG R+ +    + + + E   FP
Sbjct: 1035 LTGGDKREMMLAGLISEKRDIMTKKGDRMCFAQLEDLSGKIECIVFP 1081


>gi|223939595|ref|ZP_03631470.1| DNA polymerase III, alpha subunit [bacterium Ellin514]
 gi|223891753|gb|EEF58239.1| DNA polymerase III, alpha subunit [bacterium Ellin514]
          Length = 1224

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1085 (35%), Positives = 577/1085 (53%), Gaps = 69/1085 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL +H+ YSLL+GA  L+ ++DK    + P++AITD   LF A++F + A  
Sbjct: 1    MSHA-DFVHLHLHTEYSLLDGACRLDRLMDKAHELKFPSLAITDHGVLFGAIDFYKAARD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIGC++ +      +  +           +VLL     GY+ LI+LV+  +L + 
Sbjct: 60   KGIKPIIGCEVYVAPHSRTEKKSANGGR-DVYNHLVLLAKDEIGYKNLIKLVTAAHL-EG 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 RI    L     EGLI L+G  +  I  A   ++ Q A   +  FK+  G +  Y
Sbjct: 118  YYYKPRIDKEILAA-NKEGLIALSGCLASEIPEAIMKDNLQKARDGIDWFKQTLGAENFY 176

Query: 184  VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ H   ++      ++  A    L LVA+N+  ++ +    AHD L+ +   T ++ 
Sbjct: 177  LELQNHGIPEQAKVNKHLIPWAKEFGLKLVASNDVHYIEKGHSHAHDCLICIGTQTQLAD 236

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              R +      YL++  EM + F+++PEA++NT+E+A +C+  ++      P F   E  
Sbjct: 237  TKRMKYVEEQFYLRSAEEMKARFAEIPEAVQNTLEVAEKCNLEVEFGKLHYPVFDPPE-- 294

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKG------------------------------ 331
                  E  LR     GL  R      A+G                              
Sbjct: 295  --AYTREGYLRKLLAEGLHRRYTMHVRAEGQEFIVEGIDDARRLPTYKVQSPDAKVQGNG 352

Query: 332  ------------------YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
                                 +    RL  EL VI +  F  YFLIV DF+++ ++  I 
Sbjct: 353  NGHHVDEPITNLEDPAVKEAVKAVIDRLQMELKVIEKTGFISYFLIVGDFVRYGREQGI- 411

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
                RGS AGS+  Y L I ++DP+R++LLFERFLNP+R++ PD DIDF  DRR +VI Y
Sbjct: 412  SCVARGSAAGSLVTYLLEIANVDPIRYALLFERFLNPERVNPPDIDIDFADDRRADVIEY 471

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            V+ KYG+  VAQI+TFG++ AK+ LRDVGR + + Y   DRL K+IPN+    +  +A+ 
Sbjct: 472  VRKKYGNSSVAQIVTFGTMGAKSVLRDVGRVMGLGYGDCDRLAKMIPNELKMDL-HKALK 530

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                 + A   +     L++ +  LE + R++S HAAG+VIGD+PL  L+P+ +D     
Sbjct: 531  QSPDLKAAYDTEEVTRELIDTAFALEDITRNSSVHAAGVVIGDQPLVNLLPLKQDE-EGT 589

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLL 612
             VTQ+ M  + + GL+K DFLGLKTLT+++ + + +     V V +  +P DD +TY LL
Sbjct: 590  LVTQYAMNPVGELGLLKMDFLGLKTLTVIRNTCEMIKATKGVDVPIDNLPLDDKKTYDLL 649

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
                TLG+FQLES GMR      Q   +E I ALV+LYRPGP+D I  +  R++G+ KI 
Sbjct: 650  NNARTLGVFQLESGGMRDLCRKFQIGSVEHITALVALYRPGPMDLIPEFIKRRHGEVKIE 709

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
              HPL++ +  ET G+++YQEQVMQ AQ L+GY+L  AD+LRRAMGKK  EEM KQ+E F
Sbjct: 710  YEHPLLEKICSETYGIMVYQEQVMQAAQYLAGYTLGGADLLRRAMGKKKVEEMQKQRETF 769

Query: 733  ISGASKNGI-SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            + GA+         A  IF+LL KFA YGFNKSHAAAYA+++YQTA++K +YPVEFL+A 
Sbjct: 770  VKGAASINKIPAAKANQIFDLLEKFAGYGFNKSHAAAYAIVAYQTAYLKANYPVEFLSAM 829

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIYYSLAAIKGVGTTT 849
            MT +M +  K+ +F  +AR   I+++PP VN   V F        I + LAAIKGVG   
Sbjct: 830  MTNDMADTSKLTEFIAEARSMGIEVLPPDVNESQVAFAPARNGEVIRFGLAAIKGVGEIA 889

Query: 850  ARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++A      F SL D C RVD + +NR+VLE+L+ +GA D F  +R  +   +D  
Sbjct: 890  VQSILDARKAGGEFTSLGDMCQRVDIRTVNRKVLEALIKSGACDAFKETRSTMYAHIDKA 949

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHP 967
               A  + ++R     ++F   +    DK  +  K          + E+ +LGFY +GHP
Sbjct: 950  LTRAAGIIQDRQRGQSSMFDMLEENREDKPEVVAKLPEWPEHELLQAEKELLGFYVTGHP 1009

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKE 1026
            ++ Y P+L K  +    E          R+  +V   QQ  ++K       VT  +    
Sbjct: 1010 INPYVPLLEKYALTKIAELPKLENRALTRIGGLVSVVQQGVSKKSNKPYAMVTLEDLDGT 1069

Query: 1027 YEANF 1031
             +   
Sbjct: 1070 VQLLC 1074


>gi|114569928|ref|YP_756608.1| DNA polymerase III subunit alpha [Maricaulis maris MCS10]
 gi|114340390|gb|ABI65670.1| DNA polymerase III, alpha subunit [Maricaulis maris MCS10]
          Length = 1147

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 514/1035 (49%), Positives = 676/1035 (65%), Gaps = 20/1035 (1%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL+V S YS+LEGA+ +  +++       PAIA+TDTNNLF ALEFS+    
Sbjct: 1    MAAQLPFVHLRVRSPYSVLEGAIRMPKMVEACQTHGMPAIALTDTNNLFGALEFSEVLSG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GC L + + D     + G+   P    +VLL     GY  L+ L S  YL   
Sbjct: 61   AGVQPIVGCTLKVRLGD----PHPGERAEPDGT-LVLLAQDEVGYGNLMALSSAAYLDVD 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G +   I  S + +    GLI LTGG  G ++R         A   L      FGDRLYV
Sbjct: 116  GSEEPHIPFSLVLD-HAAGLIALTGGPDGLLNRLITGGRQPEAATYLDQLASAFGDRLYV 174

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH    +   E  +V  AY  +LPLVATN + F  +  ++AHD L+ ++ S+ VS  
Sbjct: 175  ELQRHGLEAELEAEDWLVGQAYARDLPLVATNEAYFPDQSMHKAHDALLCISESSFVSVA 234

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR RVT DHYL    EM + F+DLPEAL NT+EIARRC+F ++ HAPILP F  +     
Sbjct: 235  DRRRVTADHYLTTPEEMNARFADLPEALTNTIEIARRCAFRVRTHAPILPSFPTEGG--- 291

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             + E  EL  +A  GL  RLA  +I       DYR RLDFEL++I +M F GYFLIV+DF
Sbjct: 292  -RTEVEELIARAHEGLTDRLA--SINAAAPEADYRARLDFELDIIKQMGFPGYFLIVSDF 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK N+IPVGPGRGSGAGS+ AYALTITD+DPLRF LLFERFLNP+R+SMPDFD+DFC
Sbjct: 349  IQWAKNNDIPVGPGRGSGAGSLVAYALTITDLDPLRFGLLFERFLNPERVSMPDFDVDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            Q+RR EVIRYVQ +YGH+RVAQIITFG+LQA+A +RD GR LQ+P   VDRL K++P +P
Sbjct: 409  QERRGEVIRYVQEQYGHDRVAQIITFGTLQARAVVRDTGRVLQLPLGLVDRLAKMVPANP 468

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A+PV+  QA+  + R RE R  D SVD LL ++ KLEGL+R+ASTHAAG+VIGDR LS+L
Sbjct: 469  ANPVTLAQALDIEPRLREMRRDDESVDTLLTVALKLEGLFRNASTHAAGVVIGDRKLSEL 528

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601
            VP+YRD RSD+P TQFNMKW+E AGL+KFDFLGLKTLT++ ++L ++A       D+  +
Sbjct: 529  VPLYRDPRSDIPATQFNMKWVEPAGLVKFDFLGLKTLTVIARALGYIASTGKDVPDIEGL 588

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             FDD  T+ LL +   +G+FQLESSGMR  L+ M+PD IED+IAL+SLYRPGP+ NI VY
Sbjct: 589  DFDDQATFDLLQSGHAIGVFQLESSGMRDTLKKMKPDAIEDLIALISLYRPGPMKNIDVY 648

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             +RK G+ ++  +H  ++ +L ET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKK 
Sbjct: 649  VDRKFGRAEVDCLHADLEGVLSETYGVIIYQEQVMQIAQILSGYSLGEADLLRRAMGKKK 708

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            KEEMDKQK RF+ GA   G+S+  A  IFEL+A+FA YGFNKSHAAAYA I+Y+T ++K 
Sbjct: 709  KEEMDKQKVRFLEGAEAKGVSREKASYIFELVAEFAGYGFNKSHAAAYAAIAYRTGYLKA 768

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +YPVEF+AA M+L+  N +K+  F Q+ R+  + + PP VN    DF V +  I ++L A
Sbjct: 769  NYPVEFMAALMSLDAANTDKLSAFFQEVRRMKLDVRPPDVNASQADFSVEEGTIRFALGA 828

Query: 842  IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            I+ VG     HI+E   A+ PF  L DF  RVD +++N+R  E+L  AGA D     R +
Sbjct: 829  IRNVGFVAMEHIVEERTANGPFRDLYDFAERVDPRQVNKRTFENLAKAGAFDSLDPDRAR 888

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            ++ S + +   AQ   + R +   ++F    +    ++  L +     ++ R + E   +
Sbjct: 889  VMASAETLISMAQHAAEQRESAQASLFGGGGEEAQLERPRLPEPDPWTATQRLDAELSAI 948

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI-RLAAMVVSKQQKKT-RKGSRIG 1016
            GFY SGHPLD     L   G+  + E+      G    RLA MV  +Q++ + + G R  
Sbjct: 949  GFYLSGHPLDDLTEHLAGRGVVFFAEAPARVADGATALRLAGMVRRRQERVSNKNGERFA 1008

Query: 1017 WVTFSEPAKEYEANF 1031
            W T S+P  E+E   
Sbjct: 1009 WTTLSDPTGEFEVFV 1023


>gi|187478729|ref|YP_786753.1| DNA polymerase III subunit alpha [Bordetella avium 197N]
 gi|115423315|emb|CAJ49849.1| DNA polymerase III alpha subunit [Bordetella avium 197N]
          Length = 1163

 Score =  755 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/1055 (38%), Positives = 608/1055 (57%), Gaps = 45/1055 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +++ +   P FVHL+VHS +S+++G + +  ++ ++A   QPA+A+TD +NLF  ++F +
Sbjct: 1    MSEAVTTPPPFVHLRVHSEFSVVDGIVRIPGLIKRVAKLGQPAVALTDLSNLFGLIKFYK 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  AGI+PI G  + +   ++                 ++LV   +GY  L EL+S+ +
Sbjct: 61   SARGAGIKPIAGADVWLSNDEDRDKP----------FRALILVRNNQGYLNLCELLSQAF 110

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            L++Q K    +   WLQ  G EGLI+L+GG +G I  A    ++  A      +  +F  
Sbjct: 111  LVNQYKGRAEVRREWLQ--GQEGLILLSGGRAGDIGHALDAGNTAGALALARQWAAMFPG 168

Query: 181  RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQR     D       ++LA    LP+VAT+   FL +++++AH+  + +A   +
Sbjct: 169  AFYIELQRAGMDGDETYTQAAMRLAAEAGLPVVATHPVQFLDQDEFQAHEARVCIAEGEI 228

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R  R +P  YL++  EM   F+D+P AL NTVEIA+RC+  L +  P LP F   
Sbjct: 229  LADPRRVRRFSPQQYLQSSEEMHQRFADVPSALANTVEIAKRCNLSLVLGKPRLPDFPTP 288

Query: 299  ECDDIQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            E   +    ++ L   +  GLE     L      +      Y QRL +E + I +M F G
Sbjct: 289  EGVSL----DDYLVQLSEEGLEKRLAFLYPDEAERARQRDSYYQRLRWECSTIIQMGFPG 344

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLNP+R+SM
Sbjct: 345  YFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSM 404

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQD R+ VI YV+ KYG   V+QI TFG+L AKA +RD GR L MPY   D L
Sbjct: 405  PDFDIDFCQDNRERVIEYVKLKYGRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGL 464

Query: 476  CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP +PA P S  + + ++  FR+    +  V  L++++Q LEGL R+   HA G++I
Sbjct: 465  SKLIPFNPADPWSLERTLKEEPAFRDRYEQEEEVRALVDLAQPLEGLTRNIGMHAGGVLI 524

Query: 535  GDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-- 591
                L+   P+Y    + +  V+QF+   +E AGL+KFDFLGL+ LT+L  ++ ++ Q  
Sbjct: 525  APGKLTDFCPLYCQPGQENYAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFN 584

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  D+  +  DD   Y +L    T  +FQLES GM++ L+ ++P+  EDIIA+++LY
Sbjct: 585  PDQRDFDIMALSLDDPAAYKVLCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALY 644

Query: 651  RPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+++ +   + NRK+G+  +   HP ++  LK T GVI+YQEQVM I+Q++ GYSL 
Sbjct: 645  RPGPLESGMVDDFVNRKHGRAAVDYFHPDLEGTLKSTYGVIVYQEQVMLISQIIGGYSLG 704

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM K +E F  GA   G    +AV +F+L+ KFA YGFNKSH+AA
Sbjct: 705  GADLLRRAMGKKKPEEMAKHRELFQKGAVDKGHDPDLAVKLFDLMEKFAGYGFNKSHSAA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+I+YQTAW+K ++P EFLAA+++ +MD+ +K++ FC+DA+   ++++PP VN     F
Sbjct: 765  YALIAYQTAWLKAYHPAEFLAATLSSDMDDTDKVQIFCRDAQDNGVEVLPPDVNASGYRF 824

Query: 829  KVGDNR----------IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKL 877
               ++           + Y L A+KG G      I+ A  AD PF +L DFC RV    +
Sbjct: 825  APVEDEHTARGKPPRTMRYGLGAVKGTGQGAVEEILRAREADGPFVNLFDFCRRVGKHAV 884

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NRR +E+L+ AGA D    +R  +L S+    + A+  +  R+    ++F  +       
Sbjct: 885  NRRTIEALIRAGAFDTIESNRAAMLASVGTAMEAAE--QAARSANQASLFGDDSSEVVAG 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
              L K +  N   +   E+  LG+YFSGH  D ++  +R++                  +
Sbjct: 943  -ELTKVAPWNLHTQLTEEKAALGYYFSGHLFDAWRDEVRRIVPMPLARIEPQRDLQ--WM 999

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++ S +   TR+G  + +    +   + E + F
Sbjct: 1000 CGVLASVRVMMTRRGK-MVFAVLDDGTAQVEISVF 1033


>gi|330427709|gb|AEC19043.1| DNA polymerase III subunit alpha [Pusillimonas sp. T7-7]
          Length = 1163

 Score =  755 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1049 (38%), Positives = 611/1049 (58%), Gaps = 45/1049 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             SPSFVHL+VHS +S+++G   + +++ K A   QPA+A+TD +NLF  ++F + A  AG
Sbjct: 6    SSPSFVHLRVHSEFSVVDGIARIPDLVKKAAEYGQPAMALTDLSNLFGFIKFYKAARKAG 65

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI G  + +          Q +        ++LL S  +GY  L EL+SR +L +Q +
Sbjct: 66   VKPIAGSDVWL----------QNEQDRDKPYRLLLLASDQQGYLALCELLSRAWLDNQYR 115

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WLQ  G  GLI+L+GG +G I +     + + A     ++ + F D  ++ L
Sbjct: 116  GRAEIRREWLQ--GKTGLIILSGGRAGDIGQLLEAGNVEEAAVVAASWARAFPDSYFIEL 173

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR     D       ++LA    LP+VAT+   FL  +D+ AH+  + +A    +    R
Sbjct: 174  QRSGHEGDETYVQAAMRLAGRVGLPVVATHPVQFLHADDFRAHEARVCIADGEQLGNAKR 233

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R  T + YL + ++M   F+D+P AL NT+EIA+RC+  L +  P LP F   +     
Sbjct: 234  VRKYTTEQYLLDSADMELRFADVPSALANTLEIAKRCNLTLVLDKPRLPNFPTPQGV--- 290

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L   A  GL VR+AQ    +    +    Y +RL +E   I  M F GYFLIVA
Sbjct: 291  -TLDDYLVQLAEEGLAVRMAQLFPEEAERQEKYPQYLERLQWECKTIIGMGFPGYFLIVA 349

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI W K N +PVGPGRGSGAGS+ AY+L ITD+DP+R+ LLFERFLNP+R+SMPDFDID
Sbjct: 350  DFINWGKSNGVPVGPGRGSGAGSLVAYSLGITDLDPIRYDLLFERFLNPERVSMPDFDID 409

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQD R+ VI YV+ KYG E V+QI TFG+L AKA +RDVGR L+MPY   D L KLIP 
Sbjct: 410  FCQDNRERVIDYVKQKYGKEAVSQIATFGTLGAKAVVRDVGRVLEMPYMLCDGLSKLIPF 469

Query: 482  DPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             PA P +  +A+ ++  F+E    D  V  L+++++ LEGL R+   HA G++I    L+
Sbjct: 470  SPADPWTLKRALEEEPAFKERYDQDEEVRALIDLARPLEGLTRNIGMHAGGVLIAPGKLT 529

Query: 541  QLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKV 596
               P+Y         V+QF+   +E AGL+KFDFLGL+ LT+L  ++ ++ Q        
Sbjct: 530  DFCPLYCQPGVDTSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFNEDKRDF 589

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+  +P DD + Y LL+   T  +FQLES GM++ L+ ++P+  ED+IA+++LYRPGP++
Sbjct: 590  DIMALPLDDAQAYKLLSDGNTTAVFQLESRGMKELLKNLRPNTFEDVIAMLALYRPGPLE 649

Query: 657  NIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +   + NRK+G+ ++   HP ++P+L+ T GVI+YQEQVM I+Q++ GY+L  AD+LR
Sbjct: 650  SGMVVDFVNRKHGRAEVDYFHPDLEPVLQSTYGVIVYQEQVMLISQIIGGYTLGGADLLR 709

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM K +  F  GA + G    +AV +F+L+ KFA YGFNKSH+AAYA+I+Y
Sbjct: 710  RAMGKKKAEEMAKHRAIFEKGAVEKGYDADLAVKLFDLMEKFAGYGFNKSHSAAYALIAY 769

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTAW+K ++P EFLAA+++ +MD+ +K++ F +D    ++ ++PP VN     F+   + 
Sbjct: 770  QTAWLKYYHPAEFLAATLSSDMDDTDKVQIFWKDCLANSVTVLPPDVNASAYRFEPVADE 829

Query: 835  ----------IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883
                      I Y L A+KG G      I+ A     P+ SL DFC RVD   +NRR +E
Sbjct: 830  FMAKGQPPRTIRYGLGAVKGTGQAAIEEIIRARTEGGPYASLFDFCRRVDRHTVNRRSIE 889

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            +L+ AGA D    +R  LL ++ N  + A+  +  R+    ++FA       +   + K 
Sbjct: 890  ALIRAGAFDAIAENRAALLATVANAIEAAE--QAERSANQVSLFADNANDIVED-EVAKV 946

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
               +   R   E+  LGFYFSGH  D ++  +R+   +      A+        A ++ S
Sbjct: 947  PAWDLQTRLRQEKAALGFYFSGHLFDAWRDEVRRFAPRPLARLEASRSLQ--WFAGVLSS 1004

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + K TR+G  + +    + + + E   F
Sbjct: 1005 LRPKMTRRGK-MLYALLDDGSAQVEVAIF 1032


>gi|157372010|ref|YP_001479999.1| DNA polymerase III subunit alpha [Serratia proteamaculans 568]
 gi|157323774|gb|ABV42871.1| DNA polymerase III, alpha subunit [Serratia proteamaculans 568]
          Length = 1162

 Score =  755 bits (1948), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1051 (39%), Positives = 600/1051 (57%), Gaps = 41/1051 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  
Sbjct: 1    MAE-PRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q +     +  + +L +  EGYQ L  L+SR Y    
Sbjct: 60   AGIKPIIGADFHV----------QSEVLGDELAQLTVLAANNEGYQNLTLLISRAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E   EGLI+L+G   G + +     +    E+ L  +++ F D  Y+
Sbjct: 110  GAAGPIIDRDWLIE-HREGLILLSGARQGDVGKFLLRGNQPQVEQCLEFYQQYFPDSYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  FL  +D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFLVADDFDAHEIRVAIHDGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  T   Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYTSQQYMRDEDEMCELFADIPEALLNSVEIAKRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE     L      +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDFLVLKSKEGLEDRLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDLVIDHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523  TDFAPLYCDAEGQHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINARRAKTGLE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     I   H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA   GI   ++V IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKNPVEMAKQRGGFEDGAKSRGIDGELSVKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS---ADKPFDSLEDFCSRVDSKKLNRRVLE 883
            F V D   I Y + AIKGVG      I+EA        F  L D C+R D KKLNRR+LE
Sbjct: 823  FHVNDEGEIVYGIGAIKGVGEGPIEAILEARNSGEQGYFKDLFDLCARSDIKKLNRRILE 882

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEK 942
             L+ +GA D  G  R  L+ SL +  K A    K       ++F    +     + +   
Sbjct: 883  KLIMSGAFDRLGPHRAALMNSLPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYAN 942

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMV 1001
              +    V  + E+  LG Y +GHP+  Y   + +  G +  ++   T RG       +V
Sbjct: 943  VPLWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLV 1002

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++ +   T++G+RIG  T  + +   E   F
Sbjct: 1003 IASRVMVTKRGNRIGICTLDDRSGRLEVMLF 1033


>gi|282849948|ref|ZP_06259331.1| putative DNA polymerase III subunit alpha [Veillonella parvula ATCC
            17745]
 gi|282580385|gb|EFB85785.1| putative DNA polymerase III subunit alpha [Veillonella parvula ATCC
            17745]
          Length = 1135

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1031 (35%), Positives = 598/1031 (58%), Gaps = 27/1031 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ +SLL+G   L +++ +     QPA+AITD  N+++A+ F ++  A G++PI
Sbjct: 4    FVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +                  +  ++LL  T EGY+ L+++VS+           R
Sbjct: 64   IGCEVYVTENSRFDRPE--GRSRERLKHLILLAETMEGYRNLVKIVSKASTEGMLY-RPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 L++  ++G+I L+    G I +    ++ + A++ +  + + +G D  ++ +Q H
Sbjct: 121  ADRDLLRQY-SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEIQNH 179

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +  + + ++++L+  + L +VA+N+  ++ +ED +A D+ + ++     ++ DR + 
Sbjct: 180  GLPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDRLKF 239

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + YLK+  EM  +F  +P A+ENT++IA RC+         LP F   E +      
Sbjct: 240  PNDEFYLKSGDEMAELFGHIPGAIENTLKIADRCNVEFNFDEHHLPHFDVPEGE----TS 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR            +     G  +++ ++RLD+EL+VI  M F  YFLIV D++++A
Sbjct: 296  KTYLRKVCER-------EIPRLYGETSEELQKRLDYELDVIGTMGFEDYFLIVWDYVRYA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++R
Sbjct: 349  REHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFCYEKR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             + I YV  KYG  RV+QIITFG+  A+A +RDVGR L +P ++V+R+ K+IPN+    +
Sbjct: 409  GQAIEYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELGITL 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                       ++   +D +V  L +  +KLEG+ R++STHAAG+VI   PL   VP+  
Sbjct: 469  DKAL--QGKDLKDLYESDSNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHVPVQN 526

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
                   VTQ++   IE+ GL+K DFLGL+TLT++  +L  +   RG+ +DL  IP DD 
Sbjct: 527  ANDEGF-VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDDK 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664
                +LT   T G+FQLES G+ + +  ++P+  ED+I LV+LYRPGP+ + +   + +R
Sbjct: 586  AACDILTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFIDR 645

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++GK+++  +HP+++P+LK+T GVI+YQEQVMQIA  + G+SL +AD++RRAMGKK +  
Sbjct: 646  RHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKESV 705

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +  Q+E FI G+  NGI +++A  +F+LL  FA YGFNKSH+AAYA I+YQTA++K HY 
Sbjct: 706  LKAQRESFIQGSINNGIEESVANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKAHYF 765

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EF+AA+MT  M N++K+  +    ++ N++++ P +N     F V D+ I + L  IK 
Sbjct: 766  PEFMAATMTSFMQNMQKLTYYINACKKHNVKVLGPDINYSERSFAVQDDAIRFGLGGIKN 825

Query: 845  VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG      ++        +  + DFC RVD+K +N+R+LESL+  GA+D F  +R QLL 
Sbjct: 826  VGDNAIDRLIRERNEHGLYTDIVDFCKRVDNKVVNKRLLESLIRCGAMDGFKENRNQLLH 885

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
              ++ Q      +K+      N+F   +    D I +      +   + ++E+   GFY 
Sbjct: 886  MYESAQAVGAKEQKDAAMGTMNLFGDMEEAV-DFIPVPNVEDLSEDDKLKDEKEYTGFYI 944

Query: 964  SGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            +GHPL  Y   L  +  +    E+     G  I    ++ +K  + T++   +  +   +
Sbjct: 945  TGHPLQGYAKELEGLFELGALVENPEQYDGQTITFGGLIENKSDRMTKRNEVMSILRIED 1004

Query: 1023 PAKEYEANFFP 1033
             +       FP
Sbjct: 1005 YSGAANVVAFP 1015


>gi|226945926|ref|YP_002800999.1| DNA polymerase III subunit alpha [Azotobacter vinelandii DJ]
 gi|226720853|gb|ACO80024.1| DNA polymerase III alpha subunit [Azotobacter vinelandii DJ]
          Length = 1176

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1063 (39%), Positives = 609/1063 (57%), Gaps = 58/1063 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL+VH+ +SL++G + +  ++  +A    PA+A+TD +N+ S ++F + A A G++P
Sbjct: 4    SFVHLRVHTEFSLVDGLVRVKPLIKAVAGAGMPAVAVTDQSNMCSLVKFYKAAMAGGVKP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ-GKQS 128
            I G  + +   +          P   +  + LL   A+GY+ L ELVSR +   Q G   
Sbjct: 64   ICGADIWLASAE----------PDAPLSRLTLLAMDAKGYRNLTELVSRGWTEGQHGDGL 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            V I   W++E   EG+I L+G   G I +A        A   L  +  +F +R Y+ +QR
Sbjct: 114  VIIQRDWVKE-AAEGVIALSGAKEGEIGQALLNGHVDQAAALLEEWLAVFPERFYLEVQR 172

Query: 189  HRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                 D       V+LA  +  PLVATN+  FL +ED+EAH+  + +     +    RPR
Sbjct: 173  TGRVGDEEYLHAAVELADRYGAPLVATNDVRFLKQEDFEAHETRVCIGEGRTLGDPRRPR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   YLK  +EM  +FSDLPEALEN+VEIARRC+  +++    LP F       I   
Sbjct: 233  NYSDQQYLKTPAEMWELFSDLPEALENSVEIARRCNIEVRLGKYFLPNFPVPAGMTI--- 289

Query: 307  EENELRNKAVAGLEV-----RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             ++ LR  A  GLE         +         + Y +RL+FELN I +M F GYFLIV 
Sbjct: 290  -DDYLRQVAYEGLEERLAVLWPQETTPDYADKREVYVERLEFELNTIIQMGFPGYFLIVM 348

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 349  DFIKWAKNNGVPVGPGRGSGAGSLVAYALKITDLDPLAYDLLFERFLNPERISMPDFDVD 408

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D RD VI YV + YG   V+QIITFGS+ AKA +RDV R     Y   DRL K+IP 
Sbjct: 409  FCMDGRDRVIDYVADTYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPF 468

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +    +  +A   +   RE    D     + +++ KLEG+ R    HA G+VI    L+ 
Sbjct: 469  EVGMTLE-KAYEQEEMLREFLKNDEEAQEIWDMALKLEGITRGTGKHAGGVVIAPTKLTD 527

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
              P+  D      VTQF+   +E AGL+KFDFLGL+TLT+++ +++ + +   +      
Sbjct: 528  FAPIACDADGGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMETIHREQRRRGETEL 587

Query: 597  -DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             D+  I  DD  TY LL    T  +FQLES GM++ ++ ++PD IED+IALV+L+RPGP+
Sbjct: 588  VDIDRIALDDKATYALLQRAETTAVFQLESRGMKELIKKLKPDNIEDMIALVALFRPGPL 647

Query: 656  DNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +   + NRK+G+ ++   HP      ++P+LK T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 648  QSGMVDDFINRKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLG 707

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  F+ G +KNGI   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 708  GADMLRRAMGKKKPEEMAKQRGGFVEGCAKNGIDAELAGNIFDLVEKFAGYGFNKSHSAA 767

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y ++SYQTAW+KT YP  F+AA ++ +M N +K+    ++ R   ++I+ P VN     F
Sbjct: 768  YGLVSYQTAWLKTRYPAPFMAAVLSADMHNTDKVVTLIEECRSMKLRIVAPDVNNSEFMF 827

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V D  RI Y L AIKGVG      I+E   A  PF  L DFC+RVD K++N+R LE+L+
Sbjct: 828  TVDDEGRIVYGLGAIKGVGEGPVEAIVECRAAGGPFTDLFDFCARVDLKRINKRTLEALI 887

Query: 887  FAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
              GALD  G                +R  LL +++   + A+   ++  + H ++F    
Sbjct: 888  RGGALDRLGPYFADEPKAYQANIDRNRAVLLAAVEEAVQAAEQTARSADSGHLDLFGGLF 947

Query: 932  GTFSDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
                  +          +   R + E+  LG Y +GHP+D Y+  +R+   +   E    
Sbjct: 948  AEPEADVYANHRNARELSLKDRLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELRPA 1007

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   +A ++V+ +  K +KG ++G++T  + +   EA+ F
Sbjct: 1008 RELQ--TIAGLIVNLRVMKNKKGDKMGFITLDDRSARIEASLF 1048


>gi|294794627|ref|ZP_06759763.1| DNA polymerase III, alpha subunit [Veillonella sp. 3_1_44]
 gi|294454957|gb|EFG23330.1| DNA polymerase III, alpha subunit [Veillonella sp. 3_1_44]
          Length = 1135

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1031 (35%), Positives = 596/1031 (57%), Gaps = 27/1031 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ +SLL+G   L +++ +     QPA+AITD  N+++A+ F ++  A G++PI
Sbjct: 4    FVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +                  +  ++LL  T EGY+ L+++VS+           R
Sbjct: 64   IGCEVYVTEHSRFDRPE--GRSRERLKHLILLAETMEGYRNLVKIVSKASTEGMLY-RPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 L++  ++G+I L+    G I +    ++ + A++ +  + + +G D  ++ +Q H
Sbjct: 121  ADRDLLRQY-SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEIQNH 179

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +  + + ++++L+  + L +VA+N+  ++ +ED +A D+ + ++     ++ DR + 
Sbjct: 180  GLPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDRLKF 239

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + YLK+  EM  +F  +P A+ENT++IA RC+         LP F   E +      
Sbjct: 240  PNDEFYLKSGDEMADLFGHIPGAIENTLKIADRCNVEFNFDEHHLPHFDVPEGE----TS 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR            +     G  +++ ++RLD+EL+VI  M F  YFLIV D++++A
Sbjct: 296  KTYLRKVCER-------EIPRLYGETSEELQKRLDYELDVIGTMGFEDYFLIVWDYVRYA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++R
Sbjct: 349  REHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFCYEKR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             + I YV  KYG  RV+QIITFG+  A+A +RDVGR L +P ++V+R+ K+IPN+    +
Sbjct: 409  GQAIEYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELGITL 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                       +    +D +V  L +  +KLEG+ R++STHAAG+VI   PL   VP+  
Sbjct: 469  DKAL--QGKDLKALYESDSNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHVPVQN 526

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
                   VTQ++   IE+ GL+K DFLGL+TLT++  +L  +   RG+ +DL  IP DD 
Sbjct: 527  ANDEGF-VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDDK 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664
                LLT   T G+FQLES G+ + +  ++P+  ED+I LV+LYRPGP+ + +   + +R
Sbjct: 586  AACDLLTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFIDR 645

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++GK+++  +HP+++P+LK+T GVI+YQEQVMQIA  + G+SL +AD++RRAMGKK +  
Sbjct: 646  RHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKESV 705

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +  Q+E FI G+  NGI +++A  +F+LL  FA YGFNKSH+AAYA I+YQTA++K HY 
Sbjct: 706  LKAQRESFIQGSINNGIEESVANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKAHYF 765

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EF+AA+MT  M N++K+  +    ++ N++++ P +N     F V D+ I + L  IK 
Sbjct: 766  PEFMAATMTSFMQNMQKLTYYINSCKKHNVKVLGPDINYSERSFAVQDDAIRFGLGGIKN 825

Query: 845  VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG      ++        +  + DFC RVD++ +N+R+LESL+  GA+D F  +R QLL 
Sbjct: 826  VGDNAIDRLIRERNEHGLYTDIVDFCKRVDNRVVNKRLLESLIRCGAMDGFQENRNQLLH 885

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
              ++ Q      +K+      ++F   +      I +      +   + ++E+   GFY 
Sbjct: 886  MYESAQAVGAKEQKDAAMGTMSLFGDMEEAVE-FIPVPNVEDLSEDDKLKDEKEYTGFYI 944

Query: 964  SGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            +GHPL  Y   L  +  +    E+     G  I    ++ +K  + T++   +  +   +
Sbjct: 945  TGHPLQGYAKELEGLFELGALVENPEQYDGQTITFGGLIENKSDRMTKRNELMSILRIED 1004

Query: 1023 PAKEYEANFFP 1033
             +       FP
Sbjct: 1005 YSGAANVVAFP 1015


>gi|126728427|ref|ZP_01744243.1| DNA polymerase III subunit alpha [Sagittula stellata E-37]
 gi|126711392|gb|EBA10442.1| DNA polymerase III subunit alpha [Sagittula stellata E-37]
          Length = 1166

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 502/1058 (47%), Positives = 673/1058 (63%), Gaps = 49/1058 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+ H+ YSLLEGAL L  +    A    PA+A+TDTNNLF+ALEFS  A  
Sbjct: 1    MSD-PRFIHLRTHTEYSLLEGALRLKKLPGLCADMGMPAVAVTDTNNLFAALEFSVGASG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPIIGCQ+D+           G+   P  P +VLL  T  GY+ L++L S +YL   
Sbjct: 60   AGVQPIIGCQIDL----RYFEQAPGERIKPPAP-VVLLAQTERGYEHLMKLNSCLYLRRD 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              +   + L  L E  +E +I L+GG  GP+ R    NS   A+  +     +F DRLYV
Sbjct: 115  -NELAHVTLDEL-EAHSEDVICLSGGPDGPVGRLLRTNSRAAAQTLMTRLHAIFEDRLYV 172

Query: 185  NLQRHRGYD-------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             LQRH G D          E   V++AY   LPLVATN+  F     YEAHD ++ +A  
Sbjct: 173  ELQRHPGEDGTPPEAEHLTERGFVEMAYEMGLPLVATNDVYFPKSSMYEAHDAMICIAEG 232

Query: 238  TV-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
                 Q+ R R+TP HYLK   EM  +F+DLPEALENTVEIA+RC+F+            
Sbjct: 233  AYVDQQEPRRRLTPQHYLKTPQEMAVLFADLPEALENTVEIAKRCAFMAY--------RR 284

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            +        +E  ELR  A  GL+ RLA   I      +DY++RLDFEL +I  M F GY
Sbjct: 285  DPILPRFADDEVTELRRMANEGLQARLA--VIPHAVSVEDYQKRLDFELGIIEGMGFPGY 342

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFIQWAK  +IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMP
Sbjct: 343  FLIVADFIQWAKDQDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMP 402

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC DRR+EVIRYVQ+KYGH+RV QIITFG+L +KAA+RD+GR LQMPY QVDRL 
Sbjct: 403  DFDIDFCMDRREEVIRYVQDKYGHDRVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLS 462

Query: 477  KLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            K+IP +   PVS++  + D+ R  E    +  VDRLL+   ++EGL R A THAAG+VI 
Sbjct: 463  KMIPVEGVKPVSIEQALRDEPRLAEEAKNEEVVDRLLKYGMQVEGLLRSAGTHAAGVVIA 522

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            DRP  +LVP+YRD RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G  
Sbjct: 523  DRPTDELVPLYRDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFKSGRP 582

Query: 596  VD------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            +                   ++LIP DD  TY L  +  T+ +FQ+ESSGM  AL+ M+P
Sbjct: 583  LHVAADGTQLYEPPEGAENQINLIPLDDKVTYKLYASAKTVAVFQVESSGMMDALKRMKP 642

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             CIEDI+ALV+LYRPGP++NI VY   KNG  +I S+HP ID +L ETQG+I+YQEQVMQ
Sbjct: 643  TCIEDIVALVALYRPGPMENIPVYCEVKNGLREITSVHPSIDHILAETQGIIVYQEQVMQ 702

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IAQ+++GYSL  AD+LRRAMGKKIKE MD ++ +F  GA+KNG+ K  A  +F+LL KFA
Sbjct: 703  IAQVMAGYSLGGADLLRRAMGKKIKEAMDAERPKFEQGAAKNGVEKKKATEVFDLLEKFA 762

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQI 816
            +YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ R+   +  
Sbjct: 763  NYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKGLGLPW 822

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            +PP VN     F V + ++ Y+L A+K VG    + ++E    + F ++ DF  RVD KK
Sbjct: 823  VPPCVNRSLATFDVVEGQLVYALGALKNVGLEAMKLVVEGRDGRAFSTVFDFARRVDLKK 882

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            + +R LE +  AG  D    +R ++  SLD +  Y+  + + + +   ++F  E G    
Sbjct: 883  IGKRPLEMMARAGCFDVLDPNRRRIFDSLDALVAYSAAIHEQKGSAQVSLFG-EAGDDLP 941

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN-- 994
            +  L   S    + R   E + +GFY SGHPLD Y P L++  +   +E +A        
Sbjct: 942  EPRLSPVSDWLPAERLAEEFKAVGFYLSGHPLDDYMPALKRQDVVTLDEVMAKAERGPLV 1001

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +LA +V  +Q++K+ +G+R  +   S+P   YE   F
Sbjct: 1002 AKLAGVVAGRQERKSARGNRFAFAQLSDPTGAYEVTLF 1039


>gi|256372403|ref|YP_003110227.1| DNA polymerase III, alpha subunit [Acidimicrobium ferrooxidans DSM
            10331]
 gi|256008987|gb|ACU54554.1| DNA polymerase III, alpha subunit [Acidimicrobium ferrooxidans DSM
            10331]
          Length = 1189

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1073 (35%), Positives = 572/1073 (53%), Gaps = 59/1073 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  +N++L   AAD QPA+AITD  NL+ ALEF + A   G++P
Sbjct: 3    SFVHLHTHTEYSMLDGASRINDLLRAAAADGQPALAITDHGNLYGALEFYKAATRTGVRP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPT----------VPSIVLLVSTAEGYQRLIELVSRM 119
            IIG +  +      +   +      T             + LL     GY  LI+L SR 
Sbjct: 63   IIGLEAYMAGGSRFERPQRRGRLDDTGGESERGEKLYYHLTLLAENETGYHNLIQLSSRA 122

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +L +      RI    L+E   EGLI LTG   G + +       + A     T +++ G
Sbjct: 123  FL-EGYYYKPRIDFELLEE-HREGLIALTGCLGGLVLQHLLRGDEEGARTVAGTLREILG 180

Query: 180  -DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D ++V LQ H   ++ R   Q+++LA    L  VATN+S +   ED+E HD L+ V   
Sbjct: 181  PDNVFVELQDHGLAEQRRTNPQLLELAKHLGLRTVATNDSHYTHREDHETHDALLCVQTG 240

Query: 238  TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              ++ ++R R    +HYLK+  EM   F ++PEA + T++IA RCS  L    P LP   
Sbjct: 241  ATINDQNRFRFEGSEHYLKSAEEMRERFREVPEACDATLDIAERCSLELTFGQPALPEID 300

Query: 297  EKECDDIQKEEE---NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
                      +E     L      G   R                +R+ +EL+VI  M F
Sbjct: 301  IPVRITGATYDERAGEYLAELVWQGARARYGNDLDETTS------ERIRYELSVIESMGF 354

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFL+V D I+ A++ +I VGPGRGS AGSV AY L IT IDPL + L+FERFLNP R 
Sbjct: 355  PGYFLVVWDLIRHAREAHIRVGPGRGSAAGSVVAYCLGITQIDPLAYDLIFERFLNPGRK 414

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
             MPD D+DF +  R E+IRY   +YGH+ VAQI+TF +++A+AA+RD  R L  PY+  D
Sbjct: 415  QMPDIDMDFDERYRGEMIRYAAERYGHDHVAQIVTFSTIKARAAVRDAARVLGYPYAVGD 474

Query: 474  RLCKLIPN-DPAHPVS-----------LQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
            ++ K +P                        A  +  RE   +DP V R++++++ LEGL
Sbjct: 475  KIAKAMPPLVMGRDTPLAACLELTPGHEDGYAQAAALREMVESDPDVARVVQVAKGLEGL 534

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL------PVTQFNMKWIEKAGLIKFDFLG 575
             R    HAA +VI   PL++ +P+ R             VTQF M  +E+ GL+K DFLG
Sbjct: 535  RRQDGIHAAAVVISRDPLTEYLPIQRKPDPGQDPSEAPIVTQFEMHGVEELGLLKMDFLG 594

Query: 576  LKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L+TL+++ ++++ +   RGV +D+  I  DD  T+ +L     +G+FQLE   MRQ +  
Sbjct: 595  LRTLSVIDRAVELIRATRGVDLDIDAIALDDEATFAMLRAGDAIGVFQLEGGPMRQLMRQ 654

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            + P   ED+ ALV+LYRPGP+   +   Y +RKNG++ +  +HP ++P+L++T G++IYQ
Sbjct: 655  LAPSRFEDVAALVALYRPGPMAANMHVDYADRKNGRKPVSYLHPDLEPVLRDTYGLMIYQ 714

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            E +M++AQ ++GYSL EAD LR+A GKKI+  +  ++E+FI+G   +G    +   +F++
Sbjct: 715  ESMMRVAQQIAGYSLEEADNLRKACGKKIRTLIAAEREKFIAGCVASGYGPELGTALFDI 774

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  FADY FNKSHA  Y ++SYQTA++K ++PV+FLAA +T   D+ +K+  +  DA   
Sbjct: 775  IEPFADYAFNKSHAFGYGLVSYQTAYLKANFPVQFLAAILTSVRDDKDKLAVYLADAAAH 834

Query: 813  NIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLED 867
            +I ++ P VN   VDF V       +I + LAA++ VG    R I++      PF S  D
Sbjct: 835  HIAVLVPDVNASDVDFSVTSGPEGEQIRFGLAAVRNVGEGLVRSIIDERTRSGPFTSFAD 894

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F  RVD+  LNRR LESL+ AGA D FG+ R  L ++L+   +      + R     ++F
Sbjct: 895  FLLRVDASVLNRRTLESLIKAGAFDSFGHPRRALYEALEGALERVNERRRQRDRGLGSLF 954

Query: 928  AHEKGTFSDKITLE---KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG--IKG 982
                   S    L         ++      E+ +LG Y S HP+      + ++G  +  
Sbjct: 955  EEPSEDESVVPDLRLDIGSVEWSTPELLAFERDMLGLYVSAHPMHGV--NVDRLGRDVTP 1012

Query: 983  YEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +     T  G  + +   + +  Q+ TRKG  +  +   +     E   FP
Sbjct: 1013 ILDLIEADTPPGEPVTVVGAITALAQRTTRKGDLMATLRLEDLQAGIEVMVFP 1065


>gi|15601899|ref|NP_244971.1| DNA polymerase III subunit alpha [Pasteurella multocida subsp.
            multocida str. Pm70]
 gi|14194670|sp|Q9CPK3|DPO3A_PASMU RecName: Full=DNA polymerase III subunit alpha
 gi|12720237|gb|AAK02118.1| DnaE [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 1159

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1048 (38%), Positives = 595/1048 (56%), Gaps = 39/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS +S++ G   +  ++     +   A+ +TD  N    + F  +A +
Sbjct: 1    MSE-PRFVHLRVHSDFSMINGIAKVKPLIKACVDNHMVAMGLTDFTNFCGLVRFYGEALS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG  + +          + +        + LL     GY  +  L+S+ Y    
Sbjct: 60   AGVKPIIGADVLV----------RSELCGDEPFELTLLAKNNIGYHNITLLLSKAY-ERG 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  +WL E   EG+I+L+GG +G + +      +   E  +  ++  F D  Y+
Sbjct: 109  YQDLPYLDQAWLAE-HREGIIVLSGGHNGDVGKKLLKGHAAEIESAVAFYQDFFPDHFYL 167

Query: 185  NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +L R   Y+  R   + + LA    LP+VATN+ LFL E+D+EAH++ +A+  S  +   
Sbjct: 168  SLSRTGRYEEERYVSLALTLAEEKGLPVVATNDVLFLHEDDFEAHEIRVAIHDSYTLDDP 227

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  T   Y ++  EM  +F+D+P ALENT+ IA+RC+  +++           +   
Sbjct: 228  KRPKLYTNQQYFRSEQEMCDLFADVPSALENTLLIAQRCNVTIRLGEYF-----LPQFPT 282

Query: 303  IQKEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE     L      +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 283  GDLSTEDFLVKKSKEGLEERLKFLFPDEKVRQARRPEYDERLQVELDVINQMGFPGYFLI 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 343  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 402

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 403  VDFCMDGRDRVIDHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 462

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + + +    +D  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 463  PPDPGMTL-AKAFAAEPQLQAVYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPGLI 521

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 522  TDFSPLYCDSEGKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINTRLAKEGKP 581

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             VD++ IP DD  ++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 582  PVDIATIPLDDPASFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 641

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +++ +V       + N           H  + P+L+ T GVI+YQEQVMQIAQ L+GY+L
Sbjct: 642  LESGMVQNFIDRKHGNEVVAYPDPEYQHDSLKPILEPTYGVIVYQEQVMQIAQELAGYTL 701

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM  Q+E F  GA + G+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 702  GGADLLRRAMGKKKPEEMAAQREIFEKGAIQKGVDGELAMKIFDLVEKFAGYGFNKSHSA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT EMDN +KI     +  +  +++ PP +NT    
Sbjct: 762  AYALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVAPPDINTGKHH 821

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y + AIKGVG      ++ A      F  L D C+RVD KK+NRR  ESL
Sbjct: 822  FSVNEYGEIVYGIGAIKGVGEGPIEALISAREQGGIFKDLFDLCARVDLKKINRRTFESL 881

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L ++L++  K +    K+      ++F     +  D +       
Sbjct: 882  ILSGAFDKLGPHRAALSKNLEDALKASDQHAKDAAMGQADMFGVLTESHEDVEKAYASTP 941

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +  V  E E+  LG Y S HP+  Y   L        ++ V   RG    ++ ++VS 
Sbjct: 942  RWSEKVILEGERETLGLYLSSHPISPYLKELAHYSATRLKDLVPNSRGQMSTVSGLLVSS 1001

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T+KG+R+G  T  + +   +   F
Sbjct: 1002 RFAVTKKGNRLGIATLDDRSGRLDITLF 1029


>gi|256832318|ref|YP_003161045.1| DNA polymerase III, alpha subunit [Jonesia denitrificans DSM 20603]
 gi|256685849|gb|ACV08742.1| DNA polymerase III, alpha subunit [Jonesia denitrificans DSM 20603]
          Length = 1181

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1067 (34%), Positives = 558/1067 (52%), Gaps = 50/1067 (4%)

Query: 5    LEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +  S   FVHL VH+ YS+L+GA  L+++  + A   Q  IA TD   +F A EF  KA 
Sbjct: 1    MASSNADFVHLHVHTEYSMLDGAARLDDLFQETARLGQHTIATTDHGYIFGAYEFWSKAR 60

Query: 64   AAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            AAG++PIIG +  +                        +         L     EG   L
Sbjct: 61   AAGVKPIIGVEAYLTPGTSRFDQTRRLWGEQSQREDDVSARGAYTHFTLWARNNEGLHNL 120

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
              + S   L  Q  +  R+    LQ   +EGLI  +G  S  +           A +   
Sbjct: 121  FRMSSLASLEGQMGKWPRMDRELLQTY-SEGLIASSGCPSSEVQTRLRLGQFDEALRAAG 179

Query: 173  TFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              +++FG +  YV L  H    +    S+++++A     PLVATN+S ++  +D  + + 
Sbjct: 180  EMQEIFGKENFYVELMDHGLSIENRVRSELLEVARKINAPLVATNDSHYVRRDDAASQEA 239

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVHA 289
            L+ +   + +   DR +   D Y    ++ +   + D+PEA +NT+ IA +C       A
Sbjct: 240  LLCINSGSTLLDPDRFKFDGDGYYIKSAQEMRDLWRDIPEACDNTLLIAEQCDVSFNTSA 299

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              +P+F     +D    E +    +   GL  R  QG         D R +  FE+NVI 
Sbjct: 300  NYMPKFPCPPGED----ETSWFIKEVERGLHARYPQG------IPDDVRAQAKFEINVIT 349

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPL+  L+FERFLN
Sbjct: 350  QMGFPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMAAYAMRITDLDPLKHGLIFERFLN 409

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            PDR+SMPDFD+DF + RR EVIRYV  KYG +RVAQI+T+G+++AK AL+D  R L  P+
Sbjct: 410  PDRVSMPDFDVDFDERRRGEVIRYVSEKYGEDRVAQIVTYGTIKAKQALKDSSRLLGFPF 469

Query: 470  SQVDRLCKLIPN-DPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            +  ++L K +P       +S         +   +   FR+    DP   R++E+++ +EG
Sbjct: 470  AMGEKLTKAMPPAIMGKDISLTGIFDPQDKRYHEAEEFRQLHAGDPDAQRVVELAKGIEG 529

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R    HAAG+++   PL  ++P+ R  +    +TQF+    E  GLIK DFLGL+ LT
Sbjct: 530  LKRQWGVHAAGVIMSSDPLIDIIPIMRRPQDGAVITQFDYPTCETLGLIKMDFLGLRNLT 589

Query: 581  LLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            +L  +LD + Q   +   L  +  DD +TY LL    TLG+FQL+ +GMR  L  M+PD 
Sbjct: 590  ILDDALDNIVQNNKEPVILEDLLLDDRKTYELLARGETLGVFQLDGNGMRSLLRLMRPDN 649

Query: 640  IEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQE 693
             EDI A+ +LYRPGP+  ++   Y  RKNG++ +  IHP ++  L      T G+I+YQE
Sbjct: 650  FEDISAVGALYRPGPMGANSHTNYALRKNGQQAVTPIHPELEEPLAEILGNTYGLIVYQE 709

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVM IAQ L+GYSL +AD+LRRAMGKK K E+DKQ E F  G    G S      ++++L
Sbjct: 710  QVMAIAQKLAGYSLGQADILRRAMGKKKKSELDKQFEMFSQGMIDRGYSMQAVKTLWDIL 769

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              F+DY FNK+H+AAY V+SY TA++K +YP E++AA +T   D+ +K   +  + R+  
Sbjct: 770  VPFSDYAFNKAHSAAYGVVSYWTAYLKANYPTEYMAALLTSVKDDKDKSALYLNECRRMG 829

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRV 872
            I ++PP VN+   +F   D  I + L A++ VG      I+    D   F S  DF  +V
Sbjct: 830  ITVLPPDVNSSLANFAAVDRDIRFGLTAVRNVGGNVVDAIIATREDKGEFSSFTDFLDKV 889

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
             +   N+R +ESL+ AGA D  G+ R  L    +        V++       ++FA    
Sbjct: 890  PAVVCNKRTIESLIKAGAFDSLGHPRKALHIIHEQAVDSVISVKRKEAEGQFDLFAEFGS 949

Query: 933  TFSD----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
               +     + +      +       E+ +LG Y S HPL   + +L +       + +A
Sbjct: 950  EPEEGMSFSVDVPMLDDWDKKQLLAFEREMLGLYVSDHPLSGIEHVLTQASDLAIAKLLA 1009

Query: 989  ---TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                  G+ + +A +V + Q+K +++G+     T  +     +  FF
Sbjct: 1010 DEGRPDGSTVTIAGLVTTVQRKMSKQGNPWASATVEDLDGSIDVMFF 1056


>gi|15606309|ref|NP_213688.1| DNA polymerase III alpha subunit [Aquifex aeolicus VF5]
 gi|6014991|sp|O67125|DPO3A_AQUAE RecName: Full=DNA polymerase III subunit alpha
 gi|2983510|gb|AAC07087.1| DNA polymerase III alpha subunit [Aquifex aeolicus VF5]
          Length = 1161

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1067 (36%), Positives = 595/1067 (55%), Gaps = 68/1067 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K   FVHL +H+ +SLL+GA+ ++ ++ K       A+ ++D  NLF + +F +   A
Sbjct: 1    MSK--DFVHLHLHTQFSLLDGAIKIDELVKKAKEYGYKAVGMSDHGNLFGSYKFYKALKA 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
             GI+PIIG +             +             ++L+    +G + L++L +  Y 
Sbjct: 59   EGIKPIIGMEAYFTTGSRFDRKTKTSEDNITDKYNHHLILIAKDDKGLKNLMKLSTLAY- 117

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             +      RI    L++ G EGLI LT    G        N  + AE+ +  FK +FGD 
Sbjct: 118  KEGFYYKPRIDYELLEKYG-EGLIALTACLKGVPTYYASINEVKKAEEWVKKFKDIFGDD 176

Query: 182  LYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            LY+ LQ +   ++      ++++A  +++ L+AT ++ +L+ ED  AH VLMA+     +
Sbjct: 177  LYLELQANNIPEQEVANRNLIEIAKKYDVKLIATQDAHYLNPEDRYAHTVLMALQMKKTI 236

Query: 241  SQ---KDRPRVTPDHYLKNRSEMVS----IFSDLPEALENTVEIARRCSFILQVHAPILP 293
             +    +      D +      M       F    +AL NT+E+  + +   ++      
Sbjct: 237  HELSSGNFKCSNEDLHFAPPEYMWKKFEGKFEGWEKALLNTLEVMEKTADSFEIFENSTY 296

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
              + K      K  E  LR  A  GL  R+ +G   +    ++Y +RL++EL VI +M F
Sbjct: 297  -LLPKYDVPPDKTLEEYLRELAYKGLRQRIERG---QAKDTKEYWERLEYELEVINKMGF 352

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
            +GYFLIV DFI WAKKN+IPVGPGRGS  GS+ AYA+ ITD+DP++   LFERFLNP+R+
Sbjct: 353  AGYFLIVQDFINWAKKNDIPVGPGRGSAGGSLVAYAIGITDVDPIKHGFLFERFLNPERV 412

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPD D+DFCQD R++VI YV+NKYGH+ VAQIIT+  ++AK  LRDV RA+ +PYS  D
Sbjct: 413  SMPDIDVDFCQDNREKVIEYVRNKYGHDNVAQIITYNVMKAKQTLRDVARAMGLPYSTAD 472

Query: 474  RLCKLIPNDP--AHPVSLQAIADDS--------------------RFREARLADPSVDRL 511
            +L KLIP        +SL+ +                        +FR+     P + +L
Sbjct: 473  KLAKLIPQGDVQGTWLSLEEMYKTPVEELLQKYGEHRTDIEDNVKKFRQICEESPEIKQL 532

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
            +E + KLEGL RH S HAAG+VI  +PLS+LVP+Y D +     TQ++M  +E+ GL+K 
Sbjct: 533  VETALKLEGLTRHTSLHAAGVVIAPKPLSELVPLYYD-KEGEVATQYDMVQLEELGLLKM 591

Query: 572  DFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            DFLGLKTLT L+   + + +R  V ++   +P DD + Y LL    T G+FQLES GM++
Sbjct: 592  DFLGLKTLTELKLMKELIKERHGVDINFLELPLDDPKVYKLLQEGKTTGVFQLESRGMKE 651

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
             L+ ++PD  +DI+A+++LYRPGP+ +  +  Y  RK+GKE +    P ++P+LKET GV
Sbjct: 652  LLKKLKPDSFDDIVAVLALYRPGPLKSGLVDTYIKRKHGKEPVEYPFPELEPVLKETYGV 711

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQVM+++Q+LSG++  EAD LR+A+GKK  + M + K++FI GA + G  +     
Sbjct: 712  IVYQEQVMKMSQILSGFTPGEADTLRKAIGKKKADLMAQMKDKFIQGAVERGYPEEKIRK 771

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++E + KFA Y FNKSH+ AY  ISY TA++K HYP EF A  +T E ++ + +    +D
Sbjct: 772  LWEDIEKFASYSFNKSHSVAYGYISYWTAYVKAHYPAEFFAVKLTTEKNDNKFL-NLIKD 830

Query: 809  ARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLE 866
            A+ F  +I+PP +N   V F +  +NRI + LA IKGVG  TA+ I+EA    K F  L 
Sbjct: 831  AKLFGFEILPPDINKSDVGFTIEGENRIRFGLARIKGVGEETAKIIVEARKKYKQFKGLA 890

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF ++  ++K+N++V+E+LV AGA D     R +LL  + N        EK       ++
Sbjct: 891  DFINKTKNRKINKKVVEALVKAGAFDFTKKKRKELLAKVAN-------SEKALMATQNSL 943

Query: 927  FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            F       + K  +E+          + E+ VLGFY SGHPLD Y+ +L+       E+ 
Sbjct: 944  FG------APKEEVEELDP------LKLEKEVLGFYISGHPLDNYEKLLKN-RYTPIEDL 990

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                + +   L  ++   + KKT+ G  +      +     E   FP
Sbjct: 991  EEWDKESEAVLTGVITELKVKKTKNGDYMAVFNLVDKTGLIECVVFP 1037


>gi|134296501|ref|YP_001120236.1| DNA polymerase III subunit alpha [Burkholderia vietnamiensis G4]
 gi|134139658|gb|ABO55401.1| DNA polymerase III, alpha subunit [Burkholderia vietnamiensis G4]
          Length = 1177

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1044 (38%), Positives = 603/1044 (57%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F Q+A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   KGIKPIAGCDVWITNPDDRDKP----------SRLLLLVKDKTGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL    ++GL+ L+G   G I  A    + + A +    + ++F    Y+
Sbjct: 110  YRGRAELDASWLDGELSQGLLALSGAQQGDIGLALAAGNEEAARRHAQRWAEVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q   LA + +LP+VAT+   F++E+D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAATLAASLQLPVVATHPMQFMTEDDFTAHEARVCISEGDMLANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T   Y + + +MV++F+D+P A+ NTVEIA+RC+  L++  P LP F   +   
Sbjct: 230  RRQKRFTTAQYFRTQDDMVALFADIPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GLE RL Q              Y +RL+FE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSKEGLEKRLEQLYPDVAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPQLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPTKAD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ LL    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPASFQLLKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVTNNLVVLPPDINQSHYRFEPVAQAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L A+KG G      I+ A  +KPF  L DFC RVD + +NRR +E+L+ A
Sbjct: 826  GTRSRTIRYGLGAVKGSGQNAIEEILRAREEKPFADLFDFCERVDRRIVNRRTVEALIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R Q+L S+          +         +F     +      L      + 
Sbjct: 886  GAFDSLNPNRAQMLASVP--LAMEAAEQAAANAMQAGLFDMGAES-PHAHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   +           +A ++ S + + 
Sbjct: 943  KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKVGDLKEGRDK---LVAGIIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      + + + E   F
Sbjct: 1000 TQRGK-MLIALLDDGSGQCEITIF 1022


>gi|186476833|ref|YP_001858303.1| DNA polymerase III subunit alpha [Burkholderia phymatum STM815]
 gi|184193292|gb|ACC71257.1| DNA polymerase III, alpha subunit [Burkholderia phymatum STM815]
          Length = 1187

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/1046 (38%), Positives = 603/1046 (57%), Gaps = 39/1046 (3%)

Query: 5    LE--KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            +     P FVHL+VHS +S+ +G + +++++D  A D Q A+A+TD  N F  + F ++A
Sbjct: 1    MSPMSDPRFVHLRVHSEFSIADGIVRIDDVVDAAAKDGQGALALTDLGNAFGLVRFYKEA 60

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               G++PI GC + I   D+                ++LLV    GY  L EL+S+ +L 
Sbjct: 61   RGKGVKPIAGCDVWITNPDDRDKP----------SRLLLLVRNKTGYLNLCELLSKAWLT 110

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +Q +    +  +WL+    EGL+ L+G   G +  A    + + A++    + ++F +  
Sbjct: 111  NQYRGRAEVETAWLESGLAEGLLALSGAQHGDVGLALAAGNQEAAQRNAQRWAQIFPNGF 170

Query: 183  YVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ LQR           Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++
Sbjct: 171  YIELQRGGQAGAEAYVQQAVALAASLKLPVVATHPLQFMTPDDFTAHEARVCISEGDILA 230

Query: 242  QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               R  R T D Y + + EM+++++D+P A+ NTVEIA+RC+  L++  P LP F   + 
Sbjct: 231  NPRRQKRFTTDQYFRTQDEMIALYADIPSAIANTVEIAKRCNLTLELGKPKLPLFPTPDG 290

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYF 357
              +    ++ L   +  GLE RL Q    +       + Y  RLDFE   I +M F GYF
Sbjct: 291  MSL----DDYLVQLSKEGLEKRLEQLFPEQAERDAQREGYYARLDFECGTIIKMGFPGYF 346

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPD
Sbjct: 347  LIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPD 406

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + K
Sbjct: 407  FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAK 466

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP  P   V++   + ++   +E    +  V +LLE++Q++EGL R+   HA G++I  
Sbjct: 467  LIPFKPGKHVTIADAMKEEPLLKERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAP 526

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593
              L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +     
Sbjct: 527  GKLTDFCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 586

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ +P DD   + +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPG
Sbjct: 587  ENWSLAQVPLDDPAAFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPG 646

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  +  RK+G+E +    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+L
Sbjct: 647  PMDLIPSFCARKHGRETVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 706

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  EEM K +E F  GA++NG+++  A   F+L+ KFA YGFNKSHAAAYA+++
Sbjct: 707  RRAMGKKKPEEMAKHREIFAEGAARNGLTREKADETFDLMEKFAGYGFNKSHAAAYALLA 766

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            Y TAW+K H+P EF+AA+M+L MD+ +K+K   +D     + ++PP +N     F+    
Sbjct: 767  YHTAWLKAHHPAEFMAANMSLAMDDTDKVKILFEDCLANKMAVLPPDINLSAYRFEPVAE 826

Query: 834  R-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                    I Y L AIKG G      I+ A  + PF  + DFC+R+D + +NRR +E+L+
Sbjct: 827  ADGKRSRTIRYGLGAIKGSGQNAIEEILRAREEGPFVDIFDFCNRIDRRVVNRRTIEALI 886

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AGA D    +R QL+ S+    + A     N       +F       S    L      
Sbjct: 887  RAGAFDSLHENRAQLIASVSLAMEAADQASANAM--QAGLF-DIGDAPSQGHELVDEPAW 943

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                R + E+  LGFY SGH  D YK  +R+   +   E           +A ++VS + 
Sbjct: 944  PDKRRLQEEKTALGFYLSGHLFDAYKDEVRRFVRQKIGELKEGRDK---LVAGVIVSLRT 1000

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + T++G  +      +   + E   F
Sbjct: 1001 QMTQRGK-MLIALLDDGTGQCEVTVF 1025


>gi|157147384|ref|YP_001454703.1| DNA polymerase III subunit alpha [Citrobacter koseri ATCC BAA-895]
 gi|157084589|gb|ABV14267.1| hypothetical protein CKO_03182 [Citrobacter koseri ATCC BAA-895]
          Length = 1144

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1032 (40%), Positives = 609/1032 (59%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G    +    
Sbjct: 1    MIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTGHGAGIKPIVGADFHV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  +G      +  + +L +   GYQ L  L+S+ Y    G +   I   WL E+  
Sbjct: 57   ------RGTPLGDELCQLTVLAANNTGYQNLTLLISKAYQRGYGAEGPVIDREWLTEL-K 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            +GLI+L+GG  G + R+    +S + ++ +  +++ F DR Y+ L R    D        
Sbjct: 110  DGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFSDRYYLELIRTGRQDEETYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA T  LP+VATN+  F++ ED++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170  VELAETRGLPVVATNDVRFINSEDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEDE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEALEN+VEIA+RC+  +++           +        E+ L  K+  GL
Sbjct: 230  MCELFSDIPEALENSVEIAKRCNVTVRLGEYF-----LPQFPTGDMTTEDFLVKKSKEGL 284

Query: 320  EVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL      +    +    Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLEFLFPDEAVRKEKRPPYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K      D++ IP DD +++ +
Sbjct: 524  QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGARKNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V  D  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA   D  F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNKDGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG     A +V++ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|88857962|ref|ZP_01132604.1| DNA polymerase III subunit alpha [Pseudoalteromonas tunicata D2]
 gi|88819579|gb|EAR29392.1| DNA polymerase III subunit alpha [Pseudoalteromonas tunicata D2]
          Length = 1163

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1054 (39%), Positives = 598/1054 (56%), Gaps = 43/1054 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + PSFVHL+VHS +S+++G      I+ K A    PA+AI+D  NL   + F      
Sbjct: 1    MPQ-PSFVHLRVHSDFSMVDGLAKTKKIVAKAAEYAMPALAISDQMNLCGLVRFYDGCHY 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+   + +   D              +  + ++    +GY+ L  L+S+ YL   
Sbjct: 60   AGIKPIVAADIWLLSPD----------FPDEMCRLTVIAKNNQGYKNLTLLISKAYLRGH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  +   WL E+  EGLI+L+G   G + +A    +  + +     +++ F D  ++
Sbjct: 110  VMHRPMVDRDWLVEL-KEGLILLSGAKDGDLGKALLKGNPSLIDSVSGFYQREFADHYFL 168

Query: 185  NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R  R  +       V  +Y   +P+VATN  +FL +ED+E H++ +A+     +   
Sbjct: 169  ELVRTERPQEEEYLHLAVAHSYQTGIPVVATNEVVFLHKEDFEPHEIRVAIHDGYTLDDN 228

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP R +   Y K  ++M  +FSD+PEAL N+VEIA+RC+  +Q+       +   +   
Sbjct: 229  RRPKRYSEQQYFKTEAQMCEVFSDIPEALANSVEIAKRCNVTIQLGT-----YFLPDYPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L   +  GLE RL       + +    ++Y +RL  EL+VI +M F GYFLI
Sbjct: 284  GKLTIEDFLVKVSEDGLEERLQILFPDPVKRVEQRKEYDERLKIELDVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL+F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLQFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VD++ KLI
Sbjct: 404  IDFCMDRRDEVIDHVSALYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDKISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + R  E    D  V  L++  + LEG  R+A  HA G+VI    +
Sbjct: 464  PGDPGMTL-AKAFEVEPRLPEIYDTDDEVKELIDKCRILEGCTRNAGKHAGGVVISPTTI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +    +Y D     PVTQF+   +E AGL+KFDFLGL+TLT+LQ ++     R       
Sbjct: 523  TDFAAIYCDDEGKFPVTQFDKNDVETAGLVKFDFLGLRTLTILQWAVQMANTRLAREGKE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++LIP DD +++ LL    T  +FQLES GM+  +  ++PDC ED+IALV+L+RPGP
Sbjct: 583  SIDITLIPLDDPKSFELLLRAETTAVFQLESRGMKDLVRRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL
Sbjct: 643  LQSGMVDNFIDRKHGREEVSYPDAQYQHESLAPILEPTYGIILYQEQVMQIAQVLAGYSL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F SGA  N +   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADLLRRAMGKKKPEEMAKQRSTFESGAIGNNVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT WMKTH+P EF+AA M+ +MDN +KI     +     + ++PP VN     
Sbjct: 763  AYALVSYQTLWMKTHFPAEFMAAVMSADMDNTDKIVTLVDECENMKLTLLPPDVNFGEYK 822

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V  D  I Y + AIKGVG      I+EA     PF  L DFC+RVD K++NRRV E L
Sbjct: 823  FTVNLDGAIVYGIGAIKGVGEAPVDAILEARQSGGPFRDLFDFCARVDLKRVNRRVAEKL 882

Query: 886  VFAGALDCFGY-----SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KIT 939
            + AGALD  G      +R  L+ +L +  K A+   K       ++F       +D +  
Sbjct: 883  IMAGALDNLGPKKVQGARSILIATLKDAMKSAEQHHKAAAIGQSDLFGLLAEESNDVEHV 942

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
                     +   + E+  LG Y +GHP++ Y+  L+        +   T R  +  +A 
Sbjct: 943  FVSAPFFTDNEWLDGERETLGLYLTGHPINQYRKELKHYTAGRLVDVQPTERDVSATVAG 1002

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +V+S +    +KG R G +T  + +   +  FFP
Sbjct: 1003 LVISTRVLVNKKGKRWGLITLDDKSARMDVRFFP 1036


>gi|225875019|ref|YP_002756478.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC
            51196]
 gi|225792178|gb|ACO32268.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC
            51196]
          Length = 1173

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1058 (39%), Positives = 605/1058 (57%), Gaps = 48/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  +  ++  +A+  Q ++AITD  N++ A+ F + A   GI+PI
Sbjct: 4    FTHLHLHTDYSLLDGACDVEKLVGHVASIGQTSVAITDHGNIYGAVHFFEAAKKKGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+L I  +++ +   QG         +++L  + EGY+ L+ + S   L     +  R
Sbjct: 64   LGCELYICQKEDHRADPQG----DDYNHLLVLAESEEGYRNLVRITSEASLHG-FYRKPR 118

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            I   +L E    GLI  +G  +G   +    ++ Q A      ++ +FG    ++ +Q  
Sbjct: 119  ISKKYLAE-HAAGLIGFSGCLAGEFCQNLMADNYQAARATAAQYQDIFGRGNFFLEIQDQ 177

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPR 247
                ++   + + +L    ++PLVATN+S +L E+D+ AHDVL+ V    ++   K    
Sbjct: 178  GLELEKKIHADMFRLEKDLDIPLVATNDSHYLCEDDHHAHDVLLCVQTAGSIHDPKRFKF 237

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   Y+K+ +EM  +F   PE +  T++ A RC+  L       P F            
Sbjct: 238  DSDQFYVKSAAEMERLFPHAPEVVSRTMQFAERCNLKLNKVDNPFPEFAVPPG----HTI 293

Query: 308  ENELRNKAVAGLEVR------LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            ++   +    G + R        Q          DY  RL+ E+ +I +MKFSGYFLIV 
Sbjct: 294  DSYFEHVCREGFKKRLDTAIRHLQDRGILRSPISDYEARLEREIGIIKQMKFSGYFLIVW 353

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI++AK ++IPVGPGRGS AGS+  Y + ITDIDPL+  LLFERFLNP+R+SMPD DID
Sbjct: 354  DFIRYAKDHDIPVGPGRGSAAGSLVGYVMEITDIDPLQNVLLFERFLNPERVSMPDIDID 413

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RR EVI YV  KYG E+VAQIITF ++ AKAA++DVGRAL MPY  VDR+ K+IP 
Sbjct: 414  FCMNRRGEVIEYVTRKYGREQVAQIITFNTMAAKAAIKDVGRALDMPYGDVDRIAKMIPA 473

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +    + D  + +EA   +  +  L++ +++LEGL R A  HAAG+VI  RPL+ 
Sbjct: 474  TIGVTIDQA-LTDSPQLQEAYEGNTQIRELIDTAKRLEGLVRGAGVHAAGVVIAPRPLTD 532

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            LVP+ R  ++D  VT ++MK +EK GL+K DFLGL TLT++   L  + + RG  VD++ 
Sbjct: 533  LVPLSR-SKNDEIVTAYDMKAVEKMGLLKMDFLGLTTLTVIDDCLKMIRKNRGETVDMAK 591

Query: 601  IPFDDHETYH-LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--N 657
            +P DD ETY  +     T G+FQ ES GMR  L   +P C+ED+ AL +LYRPGPI    
Sbjct: 592  VPLDDQETYERVFHRALTSGVFQFESGGMRDVLRRYKPTCVEDLTALNALYRPGPIQGGM 651

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK G+ K+    P ++ +LKET GVI+YQEQVMQIA +L+GYSL EAD+LRRAM
Sbjct: 652  IDDFIERKWGRRKVEYELPPLETILKETLGVIVYQEQVMQIANVLAGYSLGEADLLRRAM 711

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM KQ++RF+SGA +    K   V IF+L+ +FA YGFNKSH+AAYA+++Y TA
Sbjct: 712  GKKNPEEMAKQRDRFVSGALEREFPKDKIVKIFDLMEQFAGYGFNKSHSAAYALLAYHTA 771

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            W+KTHYPVEF+AA +T E+   E + K+ Q+ R+  I + PP V     DF      I +
Sbjct: 772  WLKTHYPVEFMAALLTSEISKPENVVKYIQECREIEIPVEPPDVLFSDADFTPHGKSIRF 831

Query: 838  SLAAIKGVGTTTARHIMEAS-----ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             L AIK VG      I++A        K F +  +FC +VD + +N+RV+ESL+ AGALD
Sbjct: 832  GLTAIKNVGRNAIDSILDARGKLAAEGKSFQNFWEFCEKVDLRLMNKRVIESLIKAGALD 891

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTFSDKITLEKFSVENS 948
             FG  R QL+ S+D   + AQ  +++       +F         + S    L        
Sbjct: 892  SFG-RRAQLMASVDKAIERAQKAQRDEAAGQSGLFGLFDADAPASASPADDLPNVPDWEE 950

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVAT-------IRGN----NIR 996
            ++R ++E+ VLGF+ SGHPLD Y   LR + GI     ++          RG      I 
Sbjct: 951  ALRLQSEKEVLGFFVSGHPLDRYAEKLRNLPGIIDTATALEMKPAPPTGRRGQSNENEIA 1010

Query: 997  LAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
            +A M+V  +  K+++ G      +  +   + +   FP
Sbjct: 1011 IAGMIVGLKVAKSKRSGDLYAQASLEDATGKIDLICFP 1048


>gi|309389826|gb|ADO77706.1| DNA polymerase III, alpha subunit [Halanaerobium praevalens DSM 2228]
          Length = 1118

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1038 (35%), Positives = 593/1038 (57%), Gaps = 38/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL  H+++SLL+GA  ++++++K    + PA AITD   L+  ++F +KA  
Sbjct: 1    MSN---FVHLHNHTAFSLLDGATRIDSLIEKTKKYEMPAAAITDHGVLYGMIDFYRKAKK 57

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +L +      +   +          ++LL    +GY  LI+LVS+ +L + 
Sbjct: 58   EGIKPIIGAELYLASGSRFEKNRK-------RYHLLLLAQNKQGYYNLIQLVSKAWL-EG 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 R+    L +  ++GLI L+    G I +        +A+K    ++ +FG +  +
Sbjct: 110  FYYKPRVDKELLAKY-SDGLICLSACLQGEIPQLLIKGQYDLAQKAAADYRAIFGKNNFF 168

Query: 184  VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ H    ++     +++L+    +P V TN+S +L++ED E  D+L+A+   T ++ 
Sbjct: 169  LELQDHNLQKEKEVAQGLLKLSQAENIPTVITNDSHYLNQEDAELQDILLALQTGTTLAD 228

Query: 243  KDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            ++R   T  + Y K+  EM  +F +L  A +NTV+IA R    L  +   LP++ +    
Sbjct: 229  ENRMTFTGQEFYYKSPKEMKKLFPELNSAYQNTVKIADRVELNLDFNHFYLPKYPD---L 285

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              +K  E  L+     GL+ +               R+RL +ELN+I  M ++ YFLIV 
Sbjct: 286  GKEKSAEELLQKLCFEGLKAKEMDSDAKA-------RKRLKYELNIIFEMGYAAYFLIVY 338

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DF+++A+ N I VGPGRGS AGS+ AY L IT ++PL++ L+FERFLNP+R++MPD DID
Sbjct: 339  DFVKYAEDNGIMVGPGRGSAAGSLVAYLLKITKVNPLKYGLIFERFLNPERVTMPDIDID 398

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  + RD++I YV+ +YG ERVAQI TFG++ A+AA+RDVGR L +PY +VD++ KLI +
Sbjct: 399  F-DENRDQIIEYVKKRYGKERVAQIGTFGTMAARAAIRDVGRVLALPYKKVDQVAKLISS 457

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                  S   +    + ++    D  +  L++ ++ +EGL RH STHAAG++IG  PL+Q
Sbjct: 458  RKGIKAS---LKSQEKLQQLYQRDSQIKELIDYARGVEGLPRHISTHAAGVIIGAEPLAQ 514

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
            +VP+ +  +    +TQ  M  +E  GL+K DFLGL+ LT+++  L  + +    K+D+  
Sbjct: 515  IVPLQK--QDQSVITQLPMGDLEALGLLKMDFLGLRNLTVIKNCLQLIEKHKGKKIDIDN 572

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNI 658
            IP  D + Y  L+T  T G+FQ+ES   +   + M+P+   D+IA+++L RPGP+  + +
Sbjct: 573  IPLTDKDVYDFLSTGKTAGVFQMESYLFQSLNKKMKPEKFNDLIAMLALGRPGPLGSNIV 632

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   ++GK++   +HP + P+L+ET G+I+YQEQVM+IA  L+GYS+ EAD+LRR MG
Sbjct: 633  DDFIAIRHGKKEAEYLHPKLKPILEETFGMILYQEQVMEIASSLAGYSMGEADLLRRGMG 692

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  + +  ++E+F+ GA   GI + IA  IF+ +  FA YGFNKSH+ AYA ++YQTA+
Sbjct: 693  KKKLKLVAAEREKFVKGAVARGIQENIAQKIFDQMEYFAGYGFNKSHSTAYAFLAYQTAY 752

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYY 837
            +K HYP EF+AA  +  M N +KI  +     +  ++I+PP +N    +F    DN I Y
Sbjct: 753  LKYHYPAEFMAALFSSVMGNQDKIADYINSLAEIGLKIIPPDINRSDHNFTAANDNEILY 812

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L AIK VG+     +++A   + F SL DF  RVD  ++N + LE+ V AGA D    +
Sbjct: 813  GLKAIKNVGSAAIEAVIKARKSEKFKSLVDFLKRVDISQINIQSLEAFVKAGAFDEIAVN 872

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHEN---IFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            R  LL + + +      + KNR    ++   +F  +       +  +K     +    E 
Sbjct: 873  RASLLLNYEELYNKYNNLAKNRAQGQQSFAELFEDQNKFMQTDLKYQKVDELKTETILEQ 932

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  LG Y S HPLD Y+  L K+      +++    G  +  AA + + ++  T++ ++
Sbjct: 933  EKEFLGIYISAHPLDQYQAKLDKINFYSINKALTVDSGKKVLTAAYLSNYKEHITKRKNK 992

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + ++T S+   + E   F
Sbjct: 993  MAFLTVSDHQDKMEVIVF 1010


>gi|306821145|ref|ZP_07454761.1| DNA-directed DNA polymerase III alpha subunit [Eubacterium yurii
            subsp. margaretiae ATCC 43715]
 gi|304550838|gb|EFM38813.1| DNA-directed DNA polymerase III alpha subunit [Eubacterium yurii
            subsp. margaretiae ATCC 43715]
          Length = 1147

 Score =  753 bits (1945), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1055 (34%), Positives = 596/1055 (56%), Gaps = 43/1055 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            + + +     F HL +H+ YSLL+G   ++ ++ K +     +IAITD   +F  ++F +
Sbjct: 1    MVESITSEKKFTHLHLHTQYSLLDGFTVIDKVMKKASDLGMDSIAITDHGVMFGVVDFYK 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A    I+PIIGC+L    + +    N  K        I+LL    EGY+ LI+LVS  +
Sbjct: 61   AAKKYNIKPIIGCELYTAARTHKDKENIDKKSG----HIILLAKDDEGYRNLIKLVSIGF 116

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179
             +D      R+    L++  ++GL+ L+   +G + +       + A K  L+ ++++G 
Sbjct: 117  -VDGFYYKPRVDYELLKKY-SKGLVCLSACLAGDVQQQILAGDYEKACKTALSLEEIYGK 174

Query: 180  DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
               Y+ +Q H   ++      + +++    +PLV TN+  ++ ++D ++H+VL+ +    
Sbjct: 175  GNFYLEMQNHNIPEQKKVNIYLRKMSKDTGIPLVVTNDVHYVDKQDNKSHEVLLCIQTGK 234

Query: 239  VVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             ++ + +    T + Y K++ EM  +F    EAL NT +IA  C+      +  LP +  
Sbjct: 235  TLADEQKMEFLTNEFYFKSQDEMYELFEGDEEALYNTQKIAEMCNLEFDFDSYHLPNYEV 294

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E           L+     GL+               + RQRLDFEL VI +M +  YF
Sbjct: 295  PE----NYTAYEYLKKLCNDGLKK--------YDKVTDEIRQRLDFELEVINQMGYVAYF 342

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI +AKKNNI VGPGRGS AGS+ +Y L ITDIDPL+F+LLFERFLNP R+SMPD
Sbjct: 343  LIVHDFIDFAKKNNIAVGPGRGSAAGSIVSYLLNITDIDPLKFNLLFERFLNPQRVSMPD 402

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             DIDF  D+RD VI YV+ KYG + V+QIITFG+ +A+ A+RD  R + + Y   D++ K
Sbjct: 403  IDIDFASDKRDMVIEYVKEKYGKDHVSQIITFGTFKARLAIRDCARVMGISYFIADKVAK 462

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            +IP      +   A+  +   ++    D +V +L+++++ +EG+ RHASTHAAG+VI   
Sbjct: 463  MIPLMLGVTIE-SALNINHELKKLYDEDDTVKKLIDMAKTIEGMPRHASTHAAGVVISKN 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596
             +   VP+Y  V+ D  V QF M  +E+ GL+K DFLGL TLT++Q+++D + + R + +
Sbjct: 522  SVDSYVPLY--VQDDNIVAQFTMTTLEELGLLKMDFLGLGTLTIIQRTIDNIKKNRNISL 579

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             L  I +DD + Y  + T  TLG+FQ+ESSGMR+ ++ ++P+ +ED+ A +SLYRPGP+D
Sbjct: 580  KLDEIDYDDKKVYEHIATGKTLGMFQIESSGMRKFMKELKPENLEDLTAGISLYRPGPMD 639

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +I  Y   K  ++ I  IH  + P+L  T+G++IYQEQVMQI + L+GYS   AD++RRA
Sbjct: 640  SIGDYIKNKEDEKNIKYIHEKLIPILSVTKGIMIYQEQVMQIVRDLAGYSYGSADLVRRA 699

Query: 717  MGKKIKEEMDKQKERFISGA--------SKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            M KK  + M++++++F+ G          KNGI +  A  IF+ +  FA+YGFNKSHAAA
Sbjct: 700  MSKKKMDVMEQERQKFVYGMESENIAGCVKNGIDEKTANKIFDYMIDFANYGFNKSHAAA 759

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+VISYQTA++KT+YPVEF+A+ M++ + N +K+ ++  D ++  I+++ P VN    DF
Sbjct: 760  YSVISYQTAYLKTYYPVEFMASLMSMAIGNTDKVMEYKMDCQEMGIEVLAPDVNHSFSDF 819

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             + D++I + L+A+KGVG   A +I E    +  + S ED   R+DS+ +N++V E+L+ 
Sbjct: 820  SIEDDKIRFPLSALKGVGFAVASNIAEERGRNGRYISFEDLVERLDSRDINKKVAEALIK 879

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            +G+LD    +R   + + + I +     +KN      + F                   +
Sbjct: 880  SGSLDSIIVNRASAMSNYERIIEGIHSTKKNMVQGQISFFNASISQGYKVGIAPDIKEFS 939

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG---------NNIRLA 998
              +    E+ +LGFY SG+PL+ Y+ ++++                          +++ 
Sbjct: 940  HEILLNMEKEILGFYISGNPLEKYQDLIKQRTNMTTTAIKEINEENTSQKVIETTKVKII 999

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             M+   +   T+K + + ++T  +     E   FP
Sbjct: 1000 GMISKMKISTTKKNAMMAFITIEDLYSSVEVIVFP 1034


>gi|154174535|ref|YP_001407866.1| DNA polymerase III subunit alpha [Campylobacter curvus 525.92]
 gi|112803372|gb|EAU00716.1| DNA polymerase III subunit alpha [Campylobacter curvus 525.92]
          Length = 1201

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1060 (34%), Positives = 588/1060 (55%), Gaps = 47/1060 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              F HL +H+ YSLL+GA  +  +   +      + AITD  N+F A++F +     GI+
Sbjct: 2    SDFTHLHLHTEYSLLDGANKIKELAHVLHERGDTSAAITDHGNMFGAIDFYKTMKKEGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            P+IG +  I   D+L     G         ++L+     GY+ L+ L S  Y+ +     
Sbjct: 62   PLIGIEAYIHNADDL-----GDKSSKQRFHLILIAKNETGYKNLMYLSSMSYI-EGFYYY 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF---------FNSSQVAEKRLLTFKKLFG 179
             RI    L+E  +EG+I  +    G +                  + A++  L +K++FG
Sbjct: 116  PRINKKILKE-HSEGIICSSACLQGEVSWHLNLSERNLKYGAKGYEKAKEVALEYKEIFG 174

Query: 180  DRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            D  Y+ + RH   D+ R    ++++A    + ++ATN++ +  +E  +AH+V M +A + 
Sbjct: 175  DDFYLEIMRHGIGDQRRIDDDILRIAKETGIKVIATNDTHYTFKERADAHEVFMCIAMNK 234

Query: 239  VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF-- 295
            ++   +R R +  + ++K+  EM  +F D+PE +ENT EI ++C+  +++  P  P F  
Sbjct: 235  LLDDPNRLRHSVHEFFVKSEDEMKRLFLDIPEVIENTKEIVQKCNLEIKLGNPTPPNFKF 294

Query: 296  ------------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                         E +     K +      +   GLE RL           ++Y++RL+ 
Sbjct: 295  TLECAAERGLNLPEPKNRYSFKNDTVFFEYECKKGLEERLK---FVPENLHEEYKKRLER 351

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            E+ +I +M FSGY +IV DFI  AK   +PVGPGRGS AGS+ AY+L ITD+DP+ ++LL
Sbjct: 352  EIEIINKMNFSGYMMIVWDFINEAKSRGVPVGPGRGSAAGSLVAYSLKITDLDPIPYNLL 411

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+R+SMPD D+DFCQ RR E+I YV  KYG   VA +ITFG L AK  +RDV R
Sbjct: 412  FERFLNPERVSMPDIDVDFCQSRRGEIIDYVTQKYGKYNVAGVITFGKLLAKGVIRDVAR 471

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
               MPY++ D + KLIP++    +   A   + + +E    +P   ++ + +  LEGL R
Sbjct: 472  VCDMPYAEADAMAKLIPDELGITLK-DAFEKEPKIKELIDKNPKAAKIWKFALDLEGLNR 530

Query: 524  HASTHAAGIVIGDRPLSQLVPM--YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
            +A  HAAG+VI +  L    P+    +   D  VTQ+++K++E   LIKFDFLGLKTLT+
Sbjct: 531  NAGQHAAGVVISNEELWHKTPLFRQPNSPEDRYVTQYSLKYLEDVDLIKFDFLGLKTLTV 590

Query: 582  LQKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  ++  + +R  K  +   I  +D   Y ++ +   +GIFQ+E  GMR+    ++PDC 
Sbjct: 591  IDNAIKLVKRRTGKDVIWEQIDKNDKPVYDMIQSGQAIGIFQIEGEGMRKLGTSLRPDCF 650

Query: 641  EDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            EDI+A+++LYRPGP+++ +   +  RK+G+  I      ++P+L  T GVI+YQEQVMQI
Sbjct: 651  EDIVAMLALYRPGPMESGMLDDFVKRKHGEAAITYAFKELEPILAPTYGVIVYQEQVMQI 710

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
             Q + G+SL  AD++RRAMGKK  E + +QKE F+ GA K G +   + ++F+L+ KFA 
Sbjct: 711  VQKIGGFSLGGADLVRRAMGKKDPELLRQQKELFVEGAKKEGFNVQKSGDLFDLILKFAG 770

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            YGFNKSH+AAYA +++QTA++K +YP EF+AA +T E  NV+KI ++  ++++  I ++ 
Sbjct: 771  YGFNKSHSAAYAYVTFQTAFLKAYYPAEFMAALLTSEESNVDKIVRYIDESKRLKIDVLA 830

Query: 819  PSVNTPCVDFKVGDN----RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            PS+N    +F V DN     I + L AIKGVG     +I+        F    D  SR+D
Sbjct: 831  PSINKSMKEFSVVDNGGHDGIIFGLGAIKGVGGAAIENIIAERERGGEFKDFNDLVSRID 890

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            + K+N++V ESL+ AG  D FG++R  LL +++NI +  +   + R N  +++F  ++  
Sbjct: 891  AFKVNKKVFESLIKAGCFDEFGHTRKMLLANIENIIEACKNAAQIRKNAAQSLFGEDESM 950

Query: 934  FSDKITLEKFS-VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               KI  +      +     + EQ  +G Y SGHPLD Y+  + ++      E     + 
Sbjct: 951  NDVKINFDPVDGEYDIKQILKFEQESVGIYLSGHPLDDYREKISQIKYTLSSEFENLPQS 1010

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              I +   +     + T+ G ++G +   +     E   F
Sbjct: 1011 AEILVVGKIEDFSTRITKSGKKMGTINVLDFHGNIEIAIF 1050


>gi|117928262|ref|YP_872813.1| DNA polymerase III subunit alpha [Acidothermus cellulolyticus 11B]
 gi|117648725|gb|ABK52827.1| DNA polymerase III, alpha subunit [Acidothermus cellulolyticus 11B]
          Length = 1190

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1057 (35%), Positives = 563/1057 (53%), Gaps = 45/1057 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YS+L+GA  + ++L +  A   PAIA+TD  N++ A +F ++A A GI P
Sbjct: 24   SFVHLHVHTEYSMLDGAARIKDLLAETVAMGAPAIAMTDHGNVYGAYDFYKQARACGINP 83

Query: 70   IIGCQLDIDMQDNLKMT--------NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            IIG +  +                    +        I LL    +G   L  L S   L
Sbjct: 84   IIGMEGYLAPGSRFDRRRVSLATAGPGDENAGEMYTHITLLAENTDGMHNLFRLSSLASL 143

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-D 180
             +      R+    L     +G+I  TG  S  ++R         A +    ++ +FG +
Sbjct: 144  -EGFYYKPRMDRELLATY-AKGIIATTGCPSSEVNRLLQQGKYAAARQAAAEYRDIFGAE 201

Query: 181  RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  L  H    +R     +++LA    LPL+ATN+  +   +D+EAH+VL+ V     
Sbjct: 202  NFYCELMDHGLEIERRVRDDLLRLARELRLPLLATNDLHYTYAQDWEAHEVLLCVQTGKT 261

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++  +R +    + YLK  ++M  +F DLPEA +NT+ IA R        A ++PRF   
Sbjct: 262  LADPNRFKFDAKEFYLKTPAQMRELFRDLPEACDNTLAIAERVHVEFAEGANLMPRFPVP 321

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              +     EE+ L  +  AGL  R   G          YR+R ++EL VI +M F GYFL
Sbjct: 322  PGE----TEESWLVKEVEAGLHRRFPSGV------PDAYRERAEYELTVICQMGFPGYFL 371

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +VAD +++AK+N I VGPGRGS AGS+ AYAL IT++DP++  LLFERFLNP+R+SMPD 
Sbjct: 372  VVADLVRYAKENGIRVGPGRGSAAGSMVAYALGITELDPIKHKLLFERFLNPERVSMPDI 431

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDF + RR ++IRY   KY  + VAQIIT+G+++AK A++D  R L  PY+  DR+ KL
Sbjct: 432  DIDFDERRRGDMIRYATQKYREDHVAQIITYGTIKAKQAIKDSARVLGYPYAISDRITKL 491

Query: 479  IPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            +P       +        S    A+ + FR     DP V ++++ ++ LEGL R    HA
Sbjct: 492  MPPALMGRDLSLAAIFDPSHPRYAEAAEFRAVYENDPDVRKIVDTARNLEGLKRQWGVHA 551

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DF 588
            AG+++   PL  ++P+ R  +    +TQF+M   E  GL+K DFLGL+ LT+L   L   
Sbjct: 552  AGVILSREPLLDVIPIQRREQDGAIITQFDMGACEALGLLKMDFLGLRNLTVLDDCLAGI 611

Query: 589  LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             A RG+ + L  +P DD  TY LL    TLG+FQL+   MR  L  M+PD  EDI A+++
Sbjct: 612  KANRGIDLVLEEVPLDDPATYELLQRGETLGVFQLDGGPMRALLRSMRPDNFEDISAVLA 671

Query: 649  LYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQVMQIAQLL 702
            LYRPGP+  +  + Y +RKNG++ +  IHP +       L +T GVI+YQEQV+ IAQ +
Sbjct: 672  LYRPGPMGANAHIEYADRKNGRKPVEPIHPELAEPLADILDDTYGVIVYQEQVIAIAQRV 731

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +GYSL +AD+LRRAMGKK KE +DK+   F  G  KNG S+     ++E+L  F+DY FN
Sbjct: 732  AGYSLGQADLLRRAMGKKKKEILDKEYIPFSEGMRKNGYSEDAIRTLWEILVPFSDYAFN 791

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            K+H A Y ++SY TA++K +YP E++AA +T   D+ EK   +  + R+  I+++PP VN
Sbjct: 792  KAHTAGYGLVSYWTAYLKANYPAEYMAALLTSVKDDKEKSALYLHECRRMGIRVLPPDVN 851

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRV 881
                +F    + I + L+A++ VG      I+E   +   F    DF ++V+    N++V
Sbjct: 852  ESDTNFTPRGDDIRFGLSAVRNVGENVVASIIETRRSKGRFTDFFDFLAKVEPVVCNKKV 911

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            +ESL+ AGA D  G++R  LL     +       ++       ++F            + 
Sbjct: 912  VESLIKAGAFDSLGHTRRGLLAVHAEVVDSVMETKRAHAVGQFDLFGSAADAPEAVSIVR 971

Query: 942  KF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIRGNNIR 996
            +          V    E+ +LG Y S HPL   + +L ++               G  I 
Sbjct: 972  RPISDEEWEKPVLLAAEREMLGLYVSDHPLLGVEHVLARLVDCSIAALTDDERPDGAQIT 1031

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  +VVS  ++ TR+GS    VT  +     E   FP
Sbjct: 1032 IGGIVVSLTRRVTRQGSPWAVVTLEDLDGSIEVLVFP 1068


>gi|293604441|ref|ZP_06686848.1| DNA-directed DNA polymerase III alpha subunit [Achromobacter
            piechaudii ATCC 43553]
 gi|292817318|gb|EFF76392.1| DNA-directed DNA polymerase III alpha subunit [Achromobacter
            piechaudii ATCC 43553]
          Length = 1163

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/1055 (37%), Positives = 609/1055 (57%), Gaps = 45/1055 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +++ +     FVHL+VHS +S+++G + + +++ ++A   QPA+A+TD +NLF  ++F +
Sbjct: 1    MSEAVTNPTPFVHLRVHSEFSVVDGIVRIPDLIKRVAKLGQPAVALTDLSNLFGLIKFYK 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  AG++PI GC + +   D+                ++LLV   +GY  L EL+S+ +
Sbjct: 61   GARGAGVKPIAGCDVWLSNDDDPSKP----------FRLLLLVRNHQGYLNLCELLSKAF 110

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            L +QGK    I   WLQ  G +GLI L+GG  G + +A    ++  A      +  LF  
Sbjct: 111  LTNQGKGRAEIRREWLQ--GQQGLIALSGGRMGDVGQALDAGNAVSALALARQWAHLFPG 168

Query: 181  RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQR     D       ++LA    LP+VAT+   FL E +++AH+  + +A   +
Sbjct: 169  SYYIELQRAGMDGDEAYTQAAMRLAGEAGLPVVATHPVQFLDEYEFQAHEARVCIAEGEI 228

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R  R T + YL +  EM   F+D+P AL NTVEIA+RC+  L +  P LP F   
Sbjct: 229  LANPRRVRRFTKEQYLLSSEEMARRFADVPSALANTVEIAKRCNLSLVLGKPRLPNFPTP 288

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +        ++ L   +  GLE R+A        +    + Y +RL +E   I +M F G
Sbjct: 289  DGV----TLDDYLVQLSEEGLEKRMAFLFPNEAEREAKREQYYERLRWECKTIIQMGFPG 344

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLNP+R+SM
Sbjct: 345  YFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSM 404

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQD R+ VI YV+ KYG   V+QI TFG+L AKA +RD GR L MPY   D L
Sbjct: 405  PDFDIDFCQDNRERVIDYVKEKYGRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGL 464

Query: 476  CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP +P  P S  + + D+  F++    +  V  L+++++ LEGL R+   HA G++I
Sbjct: 465  SKLIPFNPMDPWSLERTLKDEPAFKDRYEQEEEVRALVDLAKPLEGLTRNIGMHAGGVLI 524

Query: 535  GDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-- 591
                L+   P+Y    + +  V+QF+   +E AGL+KFDFLGL+ LT+L  ++ ++ Q  
Sbjct: 525  APGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFN 584

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  D+  +  DD   Y +L    T  +FQLES GM++ L+ ++P+  EDIIA+++LY
Sbjct: 585  EDKRDFDVMALELDDPAAYKILCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALY 644

Query: 651  RPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+++ +   + NRK+G+  +   H  ++  LK T GVI+YQEQVM I+Q++ GYSL 
Sbjct: 645  RPGPLESGMVDDFVNRKHGRAAVDYFHNDLEGTLKSTYGVIVYQEQVMLISQIIGGYSLG 704

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM K +E F  GA + G    +AV +F+L+ KFA YGFNKSH+AA
Sbjct: 705  GADLLRRAMGKKKPEEMAKHRELFEQGAKEKGHDPDLAVKLFDLMEKFAGYGFNKSHSAA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+ISYQTAW+K ++P EFLAA+M+ +MD+ +K++ FC+DA+   ++++PP VN     F
Sbjct: 765  YALISYQTAWLKAYHPTEFLAATMSSDMDDTDKVQIFCRDAQDNGVEVLPPDVNFSGYRF 824

Query: 829  KVGDNR----------IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKL 877
            +   ++          + Y L A+KG G      I+ A  +  PF +L DFC RV  + +
Sbjct: 825  EPVKDKYTEKGKPPRTMRYGLGAVKGTGQGAVEDILRARKEGGPFLNLFDFCRRVGKQAV 884

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NRR +E+L+ AGA D    +R  +L S+    + A+  +  R+    ++F  + G     
Sbjct: 885  NRRTIEALIKAGAFDTIEPNRAAMLASVPTAMEAAE--QAARSANQASLFGDDSGDVVAG 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
              L K +  +   +   E+  LG+Y+SGH  D ++  +R++                  +
Sbjct: 943  -ELAKVAPWDLHKKLTEEKSALGYYYSGHLFDAWRDEVRRIVPMQLARVEPQRDLQ--WM 999

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++ S +   TR+G  + +    +   + E + F
Sbjct: 1000 CGVLASVRVMMTRRGK-MVFAVLDDGTAQVEISVF 1033


>gi|254449414|ref|ZP_05062851.1| DNA polymerase III, alpha subunit [Octadecabacter antarcticus 238]
 gi|198263820|gb|EDY88090.1| DNA polymerase III, alpha subunit [Octadecabacter antarcticus 238]
          Length = 1168

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 494/1061 (46%), Positives = 670/1061 (63%), Gaps = 52/1061 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+ H+ YSLLEGA+ +  I         PA+A+TDTNNLF ALEFS+ A  
Sbjct: 1    MAD-PRFIHLRTHTEYSLLEGAVPVKKICGLAEKFGMPAVAVTDTNNLFCALEFSEYAAK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPIIGCQ+D+     L++   G+ P    P +V L     GY  L++L S  YL D 
Sbjct: 60   AGVQPIIGCQVDL----GLRVDEPGRRPERPAP-LVFLAQNEAGYMNLMKLNSCAYL-DA 113

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G Q  ++ +  L +   EGLI L+GG  GPI R         AE  +     +F DRLYV
Sbjct: 114  GGQLPQVTVDDLAKY-NEGLICLSGGPDGPIARLLRAGQRPAAEALMAQLAAIFSDRLYV 172

Query: 185  NLQRH------RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH         ++  E   V++AY  +LPLVATN+  F     YEAHD L+ +A   
Sbjct: 173  ELQRHPVDGGLPEAEQLSEQGHVEMAYAMDLPLVATNDVYFPKTSIYEAHDALICIADGA 232

Query: 239  V-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                 + R R+TP HY K++ EMV++F+DLPEA+ NTVEIA+RC+F +            
Sbjct: 233  YVDQNEPRRRLTPQHYFKSQQEMVTLFADLPEAIANTVEIAKRCAFKVYTRD-------- 284

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                     E  EL+ +A AGL+ RL    I      +DY +RLDFEL +I  M F GYF
Sbjct: 285  PILPKFADNEIEELKLQARAGLKNRLK--VIPHAVSVEDYEKRLDFELGIIEGMGFPGYF 342

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI++AK N+IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 343  LIVADFIKFAKDNDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 402

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQ+PY QVD+L K
Sbjct: 403  FDIDFCMDRREEVIRYVQQKYGRDKVGQIITFGALLSKAAIRDVGRVLQLPYGQVDKLSK 462

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS+   +AD+ R RE    +  VDRLL   Q+LEGL R+ASTHAAG+VIGD
Sbjct: 463  MIPVEGVKPVSIVKALADEPRLREMAKNEEVVDRLLTYGQQLEGLLRNASTHAAGVVIGD 522

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            R L +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + + G  +
Sbjct: 523  RSLDELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVNLILKSGRDL 582

Query: 597  D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                               ++ IP DD  +Y L     T+ +FQ+ESSGM  AL  M+PD
Sbjct: 583  HKSPTGVELYVPAEGTLNDINAIPLDDEASYKLYAAAKTVAVFQVESSGMMDALRRMKPD 642

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDIIALV+LYRPGP++NI  +   KNG      +HP ID +L ETQG+I+YQEQVMQI
Sbjct: 643  CIEDIIALVALYRPGPMENIPKFCEVKNGISDRDMLHPSIDHILDETQGIIVYQEQVMQI 702

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ ++GYSL  AD+LRRAMGKK++E MD +K +F++G+++NG++K  A  +++LL KFA+
Sbjct: 703  AQEMAGYSLGGADLLRRAMGKKLQEAMDVEKPKFLAGSAENGVNKKKAQEVWDLLDKFAN 762

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + Q+ ++   +   
Sbjct: 763  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLGLPWS 822

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADK--PFDSLEDFCSRVDS 874
            PP VNT    F V D  + Y L A+K VG      I++A  A+   PF +L D   RVD 
Sbjct: 823  PPCVNTSLATFDVQDGTLVYGLGALKNVGVDAMGLIVDARLAEGAKPFSTLFDLARRVDI 882

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            K++ +R LE L  AGA D    +R ++  SLD +  Y+  +   + +   ++F  E G  
Sbjct: 883  KRVGKRPLEMLARAGAFDVLDPNRRKVFASLDALVGYSSAIHDQKNSNQVSLFG-EAGDD 941

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK-MGIKGYEESVA-TIRG 992
              +  L        + R   E + +GFY SGHPLD Y   L++   +   +E  A    G
Sbjct: 942  LPEPRLSAVEDWLPAERLSEEFKAVGFYLSGHPLDDYMAALKRTEKVLTLDEVTAKAASG 1001

Query: 993  NNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + ++A  V  +Q++K+ +G+R  +V  S+P  +YE   F
Sbjct: 1002 ALVAKMAGTVAGRQERKSARGNRFAFVQLSDPTGQYEVTMF 1042


>gi|291615022|ref|YP_003525179.1| DNA polymerase III, subunit alpha [Sideroxydans lithotrophicus ES-1]
 gi|291585134|gb|ADE12792.1| DNA polymerase III, alpha subunit [Sideroxydans lithotrophicus ES-1]
          Length = 1189

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1079 (38%), Positives = 616/1079 (57%), Gaps = 74/1079 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PSFVHL++HS YS+ +G + +   +    AD  PA+A+TD +N+F  ++F ++A  AGI+
Sbjct: 3    PSFVHLRLHSEYSIADGIVRIGEAVSAAKADAMPALALTDLSNVFGLVKFYKEARGAGIK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+GC + +                     ++LL  +  GY RL  L++R YL +Q +  
Sbjct: 63   PIVGCDVYVSND----------AVRDQPFRLLLLCQSHAGYLRLCGLLTRAYLENQYRGR 112

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL++ GT+GLI L+G   G +       ++  AE   L +  LF  R Y+ +QR
Sbjct: 113  PEIRTEWLRD-GTDGLIALSGAHLGEVGMTLLNGNASSAEVVALGYADLFPQRFYLEVQR 171

Query: 189  HRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                 +       V+LA    LP+VAT+   FL+ +D++AH+  + +A   V++ K R R
Sbjct: 172  FGAAREEQHLRDTVKLASKLALPVVATHPVQFLTIDDFKAHEARVCIAEGYVLNDKRRQR 231

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T   Y K ++EM ++F+DLPEAL+N+VEIA+RC+  L++  P LP F     + +   
Sbjct: 232  QFTAQQYFKTQAEMAALFADLPEALQNSVEIAKRCNISLKLGKPHLPDFPTPNGESL--- 288

Query: 307  EENELRNKAVAGLEVRLAQGAIA---KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             ++ LR+++  GLE R+ Q       +     +Y+ RLDFE+N I  MKF GYFLIVADF
Sbjct: 289  -DDFLRSESQRGLEQRMLQLYPDETVRAAKMAEYQARLDFEVNTIINMKFPGYFLIVADF 347

Query: 364  IQWAKKNNI-------PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            I+WAK           PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMP
Sbjct: 348  IRWAKSFRDARFPNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYELLFERFLNPERVSMP 407

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFD+DFCQD R+ VI+YV++ YG   V+QI TFG++ +K  +RDVGR L  PY   DRL 
Sbjct: 408  DFDVDFCQDGRELVIQYVRHHYGEACVSQIATFGTMASKGVIRDVGRVLDFPYGLCDRLS 467

Query: 477  KLIPNDPAHPVSLQAI-ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            KL+P +   PVSL+     +  F     ++  V+ L+E+ ++LE L R+   HA G++I 
Sbjct: 468  KLVPVEGVKPVSLRKAREMEPEFNAVIASEEGVEELMELGERLEDLTRNVGMHAGGVLIA 527

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA----- 590
               L+   P+Y    S+  V+Q++   +E  GL+KFDFLGL+TLT++  ++ ++      
Sbjct: 528  PGKLTDFCPLYCAEGSESTVSQYDKDDVEAVGLVKFDFLGLRTLTIIDWAVRYIQDLGTG 587

Query: 591  -------------------QRGVKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQ 630
                               Q      +  IP DD  TY  +  T  T  +FQ ES GM+ 
Sbjct: 588  ISDLGSSNAGAGGDAKSQIQNPKSFSIENIPLDDKATYDRIFRTANTTAVFQFESRGMKD 647

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
             L   QPDCI+D+IAL +LYRPGP+D I  Y NRK+ +E+++  HPL++ ++  T G+++
Sbjct: 648  TLVKAQPDCIDDLIALNALYRPGPMDFIPDYINRKHKREQVILPHPLLEKVVGNTYGIMV 707

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVMQ AQ+++GY+L  AD+LRRAMGKK  EEM +Q+  F++GA+KNGI +  A  IF
Sbjct: 708  YQEQVMQSAQVVAGYTLGGADMLRRAMGKKKAEEMAEQRSIFVAGAAKNGIEEKKANEIF 767

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            + + KFA YGFNKSHAAAY++++YQTA++K HYP  F+A++MT EM N +K+  F QDA 
Sbjct: 768  DTMEKFAGYGFNKSHAAAYSLVAYQTAYLKCHYPAAFMASTMTSEMVNTDKVSFFYQDAV 827

Query: 811  QFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
            Q  ++I+ P +N+ C  F+ V +  I Y L A+KG G     +I+ A A  PF  L DFC
Sbjct: 828  QQGLKILAPDINSSCFRFQPVDEKTIAYGLGAVKGTGEAAVENIVAARAAGPFRDLFDFC 887

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             RVD + +NRR +E+L+ AGA D     R QLL SLD     A+  +K R     ++F  
Sbjct: 888  HRVDKRIVNRRAIEALIRAGAFDSISDHRYQLLASLDAALGSAE--QKARAANQNSLFGD 945

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--- 986
            ++      + +          +   E+  LGFY SGHP   +   L         +    
Sbjct: 946  DEAHAMP-VQMADVPRWKMREQLAQEKTALGFYLSGHPYQEFAAELSNFVKHRLADITPD 1004

Query: 987  -------------VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                                +I LA MV   +  +TR+G  +  VT  + +   E   F
Sbjct: 1005 IVTPAGGNSGYGGGRRNNAKSIVLAGMVSGVRVLQTRRGK-MAVVTLDDGSAALEVVVF 1062


>gi|172061275|ref|YP_001808927.1| DNA polymerase III subunit alpha [Burkholderia ambifaria MC40-6]
 gi|171993792|gb|ACB64711.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MC40-6]
          Length = 1190

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F Q+A  
Sbjct: 14   MSD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARG 72

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 73   KGIKPIAGCDVWITNPDDRDKP----------SRLLLLVKDKVGYLNLCELLSKAWLTNQ 122

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL    ++GL+ L+G   G I  AF   + + A +    + K+F    Y+
Sbjct: 123  YRGRAELDASWLDGELSQGLLALSGAQQGDIGLAFAAGNEEAARRHAERWAKVFPGGFYI 182

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q   LA +  LP+VAT+ + F++++D+ AH+  + ++   +++  
Sbjct: 183  ELQRYGQPGAEAYIQQAATLAASLGLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANP 242

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T D Y + + EMV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   
Sbjct: 243  RRQKRFTTDQYFRTQDEMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMS 302

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GLE RL Q              Y +RL+FE   I +M F GYFLI
Sbjct: 303  L----DDYLVQLSKEGLEKRLEQLFPDTAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 358

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 359  VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 418

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 419  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 478

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 479  PFKPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 538

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 539  LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKAD 598

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 599  WSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 658

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 659  DLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 718

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 719  AMGKKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 778

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+      
Sbjct: 779  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLVVLPPDINQSHYRFEPVGEAD 838

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ A
Sbjct: 839  GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRVVNRRTVEALIRA 898

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R Q+L S+          +         +F     +      L      + 
Sbjct: 899  GAFDSLNANRAQMLASVP--LAMEAAEQAAANAMQAGLFDMGAES-PHAHALVDEPAWDD 955

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   +           +A ++ S + + 
Sbjct: 956  KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKIGDLKEGRDK---LVAGIIASLRTQM 1012

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      + + + E   F
Sbjct: 1013 TQRGK-MLIALLDDGSGQCEITIF 1035


>gi|170701606|ref|ZP_02892552.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria IOP40-10]
 gi|170133489|gb|EDT01871.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria IOP40-10]
          Length = 1177

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F Q+A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   KGIKPIAGCDVWITNPDDRDKP----------SRLLLLVKDKVGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL    ++GL+ L+G   G I  AF   + + A +    + K+F    Y+
Sbjct: 110  YRGRAELDASWLDGELSQGLLALSGAQQGDIGLAFAAGNEEAARRHAERWAKVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q   LA +  LP+VAT+ + F++++D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAATLAASLGLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T D Y + + +MV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   
Sbjct: 230  RRQKRFTTDQYFRTQDDMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GLE RL Q              Y +RL+FE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSKEGLEKRLEQLFPDTAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKAD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLVVLPPDINQSHYRFEPVGEAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ A
Sbjct: 826  GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRVVNRRTVEALIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R Q+L S+          +         +F     +      L      + 
Sbjct: 886  GAFDSLNANRAQMLASVP--LAMEAAEQAAANAMQAGLFDMGAES-PHAHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   +           +A ++ S + + 
Sbjct: 943  KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKIGDLKEGRDK---LVAGIIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      + + + E   F
Sbjct: 1000 TQRGK-MLIALLDDGSGQCEITIF 1022


>gi|171318166|ref|ZP_02907332.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MEX-5]
 gi|171096634|gb|EDT41523.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MEX-5]
          Length = 1177

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F Q+A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   KGIKPIAGCDVWITNPDDRDKP----------SRLLLLVKDKVGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL    ++GL+ L+G   G I  AF   + + A +    + K+F    Y+
Sbjct: 110  YRGRAELDASWLDGELSQGLLALSGAQQGDIGLAFAAGNEEAARRHAERWAKVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q   LA +  LP+VAT+ + F++++D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAATLAASLGLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T D Y + + +MV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   
Sbjct: 230  RRQKRFTTDQYFRTQDDMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GLE RL Q              Y +RL+FE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSKEGLEKRLEQLYPDTAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKAD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLVVLPPDINQSHYRFEPVGEAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ A
Sbjct: 826  GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKPFSDLFDFCERIDRRVVNRRTVEALIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R Q+L S+          +         +F     +      L      + 
Sbjct: 886  GAFDSLNANRAQMLASVP--LAMEAAEQAAANAMQAGLFDMGAES-PHAHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   +           +A ++ S + + 
Sbjct: 943  KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKIGDLKEGRDK---LVAGIIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      + + + E   F
Sbjct: 1000 TQRGK-MLIALLDDGSGQCEITIF 1022


>gi|188025561|ref|ZP_02959074.2| hypothetical protein PROSTU_00864 [Providencia stuartii ATCC 25827]
 gi|188023078|gb|EDU61118.1| hypothetical protein PROSTU_00864 [Providencia stuartii ATCC 25827]
          Length = 1144

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1032 (39%), Positives = 598/1032 (57%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K+AA   PA AITD  NL   ++F   A  AGI+PIIG    ++   
Sbjct: 1    MIDGLAKTGPLVKKVAAMGMPAFAITDFTNLCGLVKFYGAAHGAGIKPIIGADFFVE--- 57

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                    +     +  + +L    EGYQ L  L+S  Y    G     I   WL +   
Sbjct: 58   -------SEQLGDEIAHLTVLARNNEGYQNLTLLISEAYQKGYGAIGPTIHRDWLVK-HK 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + +     +  + ++ L  ++  F    Y+ L R    D        
Sbjct: 110  EGLILLSGGRQGDVGQFLLRGNQALVDECLAFYETHFPGCYYLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     +S   RP+  +P  YL++  E
Sbjct: 170  VELATQRGLPVVATNDVRFIESSDFDAHEIRVAIHDGFTLSDPKRPKKYSPQQYLRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEALEN+VEIA+RC+  +++           +      + E+ L  ++  GL
Sbjct: 230  MCELFADIPEALENSVEIAKRCNVTIRLGEYF-----LPQFPTGDMKTEDFLVMRSKEGL 284

Query: 320  E---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E     L      +     +Y +RL+ ELNVI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLKFLFPDEKVRAERRPEYDERLEVELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V  
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAQ 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-KAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D   + PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL-----IPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K +L       IP DD +++ +
Sbjct: 524  QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKNLEPVDIAAIPLDDQKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI   +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGAIKNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V D   I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  + D C+RVD KK+NRRV+E L+ AGA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARQKGGIFKEIFDLCARVDLKKINRRVMEKLIMAGAFDHLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL++  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  SSLEDALKAADQHAKAEAIGQTDMFGVLAEAPEQVESSYASVPKWPDQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP+  Y   + +       ++   T RG    +  +V+S +   T++G+RIG  T 
Sbjct: 944  YLTGHPITRYLNEIERYTNGLRLKDVNPTPRGQVTTVVGLVLSAKVITTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   +   F
Sbjct: 1004 DDRSGRLDIMLF 1015


>gi|313646755|gb|EFS11214.1| DNA polymerase III subunit alpha [Shigella flexneri 2a str. 2457T]
          Length = 1140

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1028 (40%), Positives = 602/1028 (58%), Gaps = 38/1028 (3%)

Query: 26   ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKM 85
                  ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++        
Sbjct: 1    MAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV-------- 52

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
              Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  EGLI
Sbjct: 53   --QCDLLGDELTHLTVLAANNTGYQNLALLISKAYQRGYGAAGPIIDRDWLIEL-NEGLI 109

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLA 204
            +L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        V+LA
Sbjct: 110  LLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELA 169

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSI 263
                LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  EM  +
Sbjct: 170  EARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCEL 229

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GLE RL
Sbjct: 230  FADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGLEERL 284

Query: 324  A---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
            A        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGS
Sbjct: 285  AFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGS 344

Query: 381  GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
            GAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG 
Sbjct: 345  GAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGR 404

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + +  E
Sbjct: 405  DAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPE 463

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
               AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+ 
Sbjct: 464  IYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDK 523

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHLLTTK 615
              +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +L   
Sbjct: 524  SDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRS 583

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVS 673
             T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E+I  
Sbjct: 584  ETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISY 643

Query: 674  -----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
                  H  +  +L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EEM KQ
Sbjct: 644  PDVQWQHESLKSVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQ 703

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+
Sbjct: 704  RSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFM 763

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGT 847
            AA MT +MDN EK+     +  +  ++I+PP +N+    F V  D  I Y + AIKGVG 
Sbjct: 764  AAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGE 823

Query: 848  TTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL 
Sbjct: 824  GPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLG 883

Query: 907  NIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +  K A    K       ++F    +     + +          V  + E+  LG Y +G
Sbjct: 884  DALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTG 943

Query: 966  HPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            HP++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + +
Sbjct: 944  HPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRS 1003

Query: 1025 KEYEANFF 1032
               E   F
Sbjct: 1004 GRLEVMLF 1011


>gi|312144146|ref|YP_003995592.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
 gi|311904797|gb|ADQ15238.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
          Length = 1119

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1040 (35%), Positives = 599/1040 (57%), Gaps = 42/1040 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL  H++YSLL+GA+ + +++ K      PA++ITD   L+  +EF Q+A  
Sbjct: 1    MAN---FVHLHNHTAYSLLDGAIRIKDLIRKSKEYSLPAVSITDHGVLYGMIEFYQQAKK 57

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              I+PIIGC+L +         N+          +VLL    EGY  LI+LV++ +L + 
Sbjct: 58   ENIKPIIGCELYLA-------ENKLSNRNRKNYHLVLLAENNEGYHNLIQLVTKSWL-EG 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 R+    L +  ++GLI L+    G + +     +  +A+K +  ++ +FG D  +
Sbjct: 110  FYYKPRVDKELLAK-HSDGLICLSACLQGEVPQLILNGNYDLAKKAVSDYQAIFGHDSFF 168

Query: 184  VNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ H   +    +Q +++L+    +PLV +N+S +L  ED E  D+L+A+   T +  
Sbjct: 169  LELQDHNLKEEKEAAQGLIKLSNEENIPLVVSNDSHYLEREDSELQDILLALQTGTTIDD 228

Query: 243  KDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            ++R   +  ++Y K+ SEM  +F DL  A ENTV+IA R +  L         F   +  
Sbjct: 229  ENRMSFSGQEYYYKSPSEMKKLFPDLDSAYENTVKIADRVNLELDF-----NHFYLPDYP 283

Query: 302  DI--QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            D+   K  E  L       L+ R            +   +RL +EL +I  M ++ YFLI
Sbjct: 284  DLKDNKNPEELLEKLCKKALKERGM-------AEDEKAVERLQYELKIIFEMGYAAYFLI 336

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DF+++A+ N+I VGPGRGS AGS+ AY L IT ++PL++ L+FERFLNP+R++MPD D
Sbjct: 337  VYDFVKYAENNDIMVGPGRGSAAGSLVAYLLKITKVNPLKYGLIFERFLNPERVTMPDID 396

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDF  + RD++I YV+++YG +RVAQI TFG++ A+AA+RDVGRAL +PY +VD+  KLI
Sbjct: 397  IDF-DENRDQIIEYVRDRYGRDRVAQIGTFGTMAARAAVRDVGRALGIPYGKVDKAAKLI 455

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +      S   + ++ + R     D  + ++++ ++ +EG  RH STHAAG++IG  PL
Sbjct: 456  SSRSGIEES---LNNNKKLRNLYKEDGQIKKMIDYAKGVEGFPRHISTHAAGVIIGAEPL 512

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDL 598
            +++VP+ +  + +  +TQ  M  +E  GL+K DFLGL+ LT+++ +L+ +  R   K+D+
Sbjct: 513  AEIVPLQK--QDENIITQLPMDDLEALGLLKMDFLGLRNLTVIKNTLELIESRKNEKIDI 570

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656
            + IPFDD   Y  L+T  T G+FQ+ES   +   + ++P+   D+IA+++L RPGP+  +
Sbjct: 571  NSIPFDDKNVYDFLSTGKTAGVFQMESYLFKSLNQRLKPERFNDLIAMLALGRPGPLGSN 630

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  +   ++G+++   +HP +  +L+ET G+I+YQEQVM+IA  L GYS+ EAD+LRR 
Sbjct: 631  IVDDFIAIRHGEKEADYLHPKLKAILEETFGMILYQEQVMEIASSLGGYSMGEADLLRRG 690

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  E +  ++E+F+ GA  NGI+   A  IF+ +  FA YGFNKSH+ AYA ++YQT
Sbjct: 691  MGKKKLEIVAAEREKFVQGAVNNGIAAETAEKIFDQMEYFAGYGFNKSHSTAYAFLAYQT 750

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRI 835
            A++K +YP EF+AA  +  M N +KI  + + AR+ +++I+ P +N    DFK   DN+I
Sbjct: 751  AYLKYYYPAEFMAALFSSVMGNQDKIADYIKAAREIDLEILAPDINKSYHDFKAEGDNKI 810

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             Y L AIK VG+ T   +  A  +K F S+ DF  R+D   LN +  E+ + AGA D   
Sbjct: 811  RYGLKAIKNVGSNTIYALENARKEKEFKSVVDFLKRIDMSALNIQSFEAFIKAGAFDDIV 870

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHEN---IFAHEKGTFSDKITLEKFSVENSSVRF 952
             SR  LL + + + +    + + R     +   +F  E     + +  E      +    
Sbjct: 871  ESRAALLINYEELYQKYNNLSRQRAQGQRSFAELFGEENKFIEEDLKYEDIKELETETIL 930

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y S HPLD Y+  + K+ I    +++    G  +  A  ++S ++  T++ 
Sbjct: 931  KQEKEYLGIYLSAHPLDNYQHKITKLNIANISQAIKASDGEKVFTAGNIISYKEHITKRN 990

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +++ ++T S+   + E   F
Sbjct: 991  NKMAFLTISDQNDKIEIIVF 1010


>gi|145594342|ref|YP_001158639.1| DNA polymerase III subunit alpha [Salinispora tropica CNB-440]
 gi|145303679|gb|ABP54261.1| DNA polymerase III, alpha subunit [Salinispora tropica CNB-440]
          Length = 1177

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/1061 (32%), Positives = 535/1061 (50%), Gaps = 44/1061 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YS+L+GA  L ++  ++     PA+A+TD  N+  A +F ++A AAG++P
Sbjct: 4    SFAHLHVHTEYSMLDGAARLKDLFAEVNRQGMPAVAMTDHGNMHGANDFYKQAMAAGVKP 63

Query: 70   IIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            I+G +  +  +                    +       + +      G   L +L SR 
Sbjct: 64   ILGIEAYVAPESRFHKKRVRWGRPEQKSDDVSGSGGYTHMTIWAKNKVGLHNLFKLTSRS 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +      +  R+    L E  +EGLI  TG  SG +      +    A K    ++ +FG
Sbjct: 124  FTEGFFVKWPRMDTELLAE-HSEGLIATTGCPSGEVQTRLRLDQYDEALKAAAKYQDIFG 182

Query: 180  -DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +  ++ +  H    +R    ++ ++++  ++P V TN+S +  +   EAHDVL+ V  +
Sbjct: 183  KENFFLEVMDHGIDIERRVRQELAEISHKLDIPPVVTNDSHYTYQAQSEAHDVLLCVQTA 242

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
              V+  +R R     Y    ++ +                      +           + 
Sbjct: 243  ANVADPNRFRFDGSGYYIKSADEMRGVDSSELWRAGCRNTLLVAEMVDPAGMFDFRNLMP 302

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            +      + +E+  R +   GL  R   G        + + ++ ++EL VI +M F  YF
Sbjct: 303  RFPVPEGETDESWFRKETFKGLARRFPNGV------PETHLKQAEYELGVIIQMGFPSYF 356

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+VADFIQWAK   I VGPGRGS AGS+ AYAL ITD+DPL   L+FERFLNP+R+SMPD
Sbjct: 357  LVVADFIQWAKGEGIAVGPGRGSAAGSLVAYALGITDLDPLPHGLIFERFLNPERVSMPD 416

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             DIDF + RR EVI+YV  K+G ++VAQI TFG+++AKAA++D  R L  PY+  DR+ K
Sbjct: 417  VDIDFDERRRGEVIKYVTEKWGEDKVAQIATFGTIKAKAAIKDSARVLGYPYAVGDRITK 476

Query: 478  LIPN-DPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
             +P       +             A+    R    +DP V ++++ ++ +EGL R    H
Sbjct: 477  AMPPAVMGKDIPLTGIFDPQHSRYAEAGEIRGLYESDPDVKKVIDTARGIEGLIRQTGVH 536

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAG+++   P+   +P+ R       +TQF+    E  GL+K DFLGL+ LT++  +L  
Sbjct: 537  AAGVIMSAEPIVDHIPLMRRDADGAIITQFDYPTCESLGLLKMDFLGLRNLTIIDDALKN 596

Query: 589  LA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            +    G  VDL  +P DD  TY LL+   TLG+FQL+   MR  L  M+PD  EDI A++
Sbjct: 597  IESNHGRTVDLLQLPLDDTATYELLSRGDTLGVFQLDGGPMRSLLRTMKPDNFEDISAVL 656

Query: 648  SLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQVMQIAQL 701
            +LYRPGP+  ++   Y  RKNG ++I  IHP +   L+     T G+I+YQEQV + AQ+
Sbjct: 657  ALYRPGPMGANSHTNYALRKNGLQEITPIHPELAEPLEEILGPTYGLIVYQEQVQRAAQV 716

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            L+GYSL +AD+LRRAMGKK KE +DK+   F  G   N  S      ++++L  FADY F
Sbjct: 717  LAGYSLGKADLLRRAMGKKKKEVLDKEFVPFRDGMRANDYSDEAIQTLWDILVPFADYAF 776

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NK+H A Y ++SY T ++K +YP E++AA +T   D+ +K+  +  + R+  IQ++PP V
Sbjct: 777  NKAHTAGYGLVSYWTGYLKANYPAEYMAALLTSVGDDKDKMALYLSECRRMGIQVLPPDV 836

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRR 880
            NT    F      I + LAAI+ VG      IM        +    DF S+V++   N++
Sbjct: 837  NTSAGPFTPVGRDIRFGLAAIRNVGANVVSAIMRCRGEKGAYTDFYDFLSKVEAVVCNKK 896

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-----EKGTFS 935
             +ESL+ AGA D   +SR  LL    +       V++       ++F       + G  +
Sbjct: 897  TIESLIKAGAFDSLDHSRRGLLAVHADAIDAYADVKRKEAVGQYDLFGAGFADSDAGQST 956

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA---TIRG 992
              + +      +   +   E+ +LG Y S HPL   + +L                   G
Sbjct: 957  TVMPVIAEGEWDKREKLAFEREMLGLYVSDHPLFGLEHVLGAAADTTIAALSEEGTVPDG 1016

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + LA ++   Q++ T++G      T  + A   E  FFP
Sbjct: 1017 TVVTLAGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFP 1057


>gi|157738461|ref|YP_001491145.1| DNA polymerase III subunit alpha [Arcobacter butzleri RM4018]
 gi|157700315|gb|ABV68475.1| DNA polymerase III, alpha subunit [Arcobacter butzleri RM4018]
          Length = 1187

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1065 (37%), Positives = 600/1065 (56%), Gaps = 48/1065 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F HL +H+ YSLL+GA  +  +  K+      ++A+TD  N+F A+ F      
Sbjct: 1    MSQIPQFTHLHLHTEYSLLDGANKIKPLAKKLKKLGMTSVAMTDHGNMFGAIAFYNAMRD 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   +++               + L      GY+ L+ L S+ Y+ + 
Sbjct: 61   EGIKPIIGMEAYIHNSEDI-----SDKTNRQRYHLCLYAKNEIGYKNLMYLSSQAYI-NG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTF 174
                 RI    L+E  +EGL+       G I+                  + A+K  L +
Sbjct: 115  FYYYPRINKKILKE-NSEGLVCSAACLQGEINWHLNTQSERNVKFGAKGYEEAKKIALEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            K++FGD  Y+ + RH   D+   + Q+++L+    + +VATN++ +L ++D +AH+  M 
Sbjct: 174  KEIFGDDFYLEIMRHGISDQLFVDDQILKLSKETGIKVVATNDTHYLEQKDADAHEAFMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            +A + +    +R R +  + YLK+  ++  ++SD+PEA+E T EIA +C+  +++  P  
Sbjct: 234  IAMNKLYDDPNRLRHSVHEFYLKSPEQIAKLYSDIPEAIETTQEIADKCNLTIKLGNPTP 293

Query: 293  PRF--------------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
            P F               E + +   + ++    ++   GLE RL    I    H Q+YR
Sbjct: 294  PNFKFTRQKSQEAGLTLPEPDNEYSLENDKILFIHECRIGLEDRLK---IVPAEHHQEYR 350

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             RL+ E+ +I  MKF GY LIV DF+  AK+  IPVGPGRGS AGS+ A++L ITDIDP+
Sbjct: 351  DRLEVEIEIINNMKFPGYMLIVWDFVIVAKRMGIPVGPGRGSAAGSLVAFSLKITDIDPI 410

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
             + LLFERFLNP+R+SMPD D+DFCQ RR E+I YV  +YG   VAQIITFG L AK  +
Sbjct: 411  PYGLLFERFLNPERVSMPDIDMDFCQSRRGEIIDYVVQQYGRANVAQIITFGKLLAKGVI 470

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
            RDV R L MPYS+ D + KLIP++    +       + + +E   ADP   R+ E +  L
Sbjct: 471  RDVARVLDMPYSKADAMAKLIPDELGIDLKNSW-EKEPKIKELCEADPQAARVWEYALAL 529

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R+A THAAG+VI + PL +  P+++    D   TQ+N K+IE   LIKFDFLGLKT
Sbjct: 530  EGLNRNAGTHAAGVVISNEPLWKKTPLFKPSGLDTLATQYNGKYIEDVDLIKFDFLGLKT 589

Query: 579  LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT+++++   + QR   +V+      +D   Y L+ T  T+G+FQ+ES GM+   + ++P
Sbjct: 590  LTVIEEANKLIEQRHGKRVNFITTDVNDKGVYDLIQTGNTIGLFQIESDGMQDLCKRLKP 649

Query: 638  DCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLID----PMLKETQGVIIY 691
               EDIIA+++LYRPGP+++ +   +  RK+G+ KI   H  ++    P+L+ T GVI+Y
Sbjct: 650  SNFEDIIAVLALYRPGPMESGMLDDFIERKHGRAKIDYFHDELESALKPILENTYGVIVY 709

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVMQI Q + G+SL  AD++RRAMGKKIKEEMD+ K  F  GA   G ++  A  +F+
Sbjct: 710  QEQVMQIVQSVGGFSLGGADLVRRAMGKKIKEEMDRLKGEFADGAQNKGYTRAYAEELFD 769

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            L+ KFA YGFNKSH+AAYA++++ T+++K +YP EF+AA +TLE DN +K+ K+  + ++
Sbjct: 770  LIVKFAGYGFNKSHSAAYALVTFYTSYLKCYYPAEFMAALLTLEKDNTDKVVKYVDETKR 829

Query: 812  FNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
              +++ PP +N   + F      G   + + + AIKG G      I+ A  + PF  L D
Sbjct: 830  LGLELFPPDINKSDLVFSAKKIDGKEVVMFGMGAIKGAGDVAINAILNARGNAPFKDLPD 889

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F SR+D  K+N+RV+ESL  AGA D FGY+R  LL  ++ I          +     ++F
Sbjct: 890  FISRIDGSKVNKRVIESLTKAGAFDSFGYTRKSLLNQIEKIVDTVGKAATAKKMMTGSLF 949

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +      I LE  +  +     E E+  LGFY SGHPLD YK  L K+      +  
Sbjct: 950  GDSEELTKIDIELEHLNEFDPKELLEFEKATLGFYVSGHPLDEYKKDLEKINFTLSSQID 1009

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                G+       + S  +K ++KG++ G V+  +     E   F
Sbjct: 1010 ELEDGSQALFVGKIESITEKTSKKGNKFGIVSILDFHGTIEFMLF 1054


>gi|326794450|ref|YP_004312270.1| DNA polymerase III subunit alpha [Marinomonas mediterranea MMB-1]
 gi|326545214|gb|ADZ90434.1| DNA polymerase III, alpha subunit [Marinomonas mediterranea MMB-1]
          Length = 1156

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1042 (39%), Positives = 602/1042 (57%), Gaps = 32/1042 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
             SF+HL++H+ +SL++G + +  +L +  A + PA+AITD NNL   + F + A   GI+
Sbjct: 2    SSFIHLRLHTEFSLVDGLVKVKGLLGETEAQKMPAVAITDENNLCGFVRFYKGAMDKGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  + ++ Q  +++             + LL  + +GY+ +IE++S+ Y L Q +  
Sbjct: 62   PICGADVILEEQGEVEV----------RTRLTLLAMSNKGYKNVIEVISKGYQLGQHEGR 111

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  +W++E  +E +I L+GG  G I        ++ A+K L  +  +F DR Y+ ++R
Sbjct: 112  PIVQRAWVEE-HSEDVIALSGGVQGDIGFLLSKYKTEEAKKYLDYWMSVFPDRFYLEMER 170

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246
              R  +      V+ LA     P+VATN+  FL +ED+EAH+  + +  S  +    R  
Sbjct: 171  TARAGEEDYIHTVIPLASEASCPVVATNDVRFLKKEDFEAHEARVCIHDSVTLDDPRRKR 230

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R + + Y K+ +EM ++F D+PEALENTVEIA+RC+  + +    LP +   +   +   
Sbjct: 231  RYSEEQYFKSAAEMEAVFEDIPEALENTVEIAKRCNVDVLLGKYFLPDYPVPDGMTMDDF 290

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                        LEV + +         Q+Y  RLDFELN+I +M F GYFLIV DFIQW
Sbjct: 291  FNELSHKGLQDRLEVLIKKDGDRIANRRQEYLDRLDFELNIINQMGFPGYFLIVMDFIQW 350

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDFC + 
Sbjct: 351  AKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMEN 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD+VI YV   YG + V+QIITFG++ AKA +RDV R    PYS  D+L KLIP +    
Sbjct: 411  RDKVIDYVARTYGRDAVSQIITFGAMAAKAVVRDVARVQGKPYSLGDKLSKLIPFEIGMT 470

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+ ++    E    D     ++E++  LEG+ R+   HA G+VI    L+   P+Y
Sbjct: 471  LK-KALEEEPALVEFIEGDEEAADVMEMAFSLEGVVRNFGKHAGGVVIAPTKLTDFAPLY 529

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVDLSLI 601
             +      VTQ++   +E+AGL+KFDFLGLKTLT++  +L  +      +    +D++LI
Sbjct: 530  CEEDGSGLVTQYDKNDVEEAGLVKFDFLGLKTLTVVDWALGNINALHAKEGKPPLDIALI 589

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
              +D  TY LL    T  +FQLES GM++ ++ + P   EDIIALV+LYRPGP+ + +V 
Sbjct: 590  DLEDKSTYDLLQRAETTAVFQLESRGMKELIKKLLPSRFEDIIALVALYRPGPLGSGMVD 649

Query: 662  NNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +                   H  + P+L+ T G+I+YQEQVMQIAQ+L+ +SL  AD+LR
Sbjct: 650  DFINRKHGRAELAFPHPDYQHDDLIPVLEPTYGIILYQEQVMQIAQVLAKFSLGGADLLR 709

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  E M +Q+  F+ GA+KN I K +  NIF+L+ KFA YGFNKSH+AAYA++SY
Sbjct: 710  RAMGKKKPEVMAEQRLIFMEGAAKNNIDKDLGGNIFDLMEKFAGYGFNKSHSAAYALVSY 769

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-N 833
            QTAW+K HYP  F+AA ++ +M N +KI  F ++ R   + +  P+VN     F V +  
Sbjct: 770  QTAWLKNHYPAPFMAAVLSADMQNTDKIVIFIEECRAMKLTLELPNVNESVYKFTVNEAG 829

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             + Y L AIKGVG      I+EA  D PF+ + DFC RV  +K+N+RV+E+LV +GA D 
Sbjct: 830  AVVYGLGAIKGVGEGPIEAIVEARQDGPFEHIFDFCQRVG-RKVNKRVMEALVRSGAFDT 888

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVR 951
             G +R  L  S+D   K A    KN      ++F    E+ T +    +          R
Sbjct: 889  IGPNRATLFASIDEALKRADQNAKNEDAGMMDLFGVAVEESTENAYDEIGIQHEWAGRQR 948

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
             + E+  LG Y +GHP+D Y+  LR+       +           LA ++V  +  K+++
Sbjct: 949  LDGEKDTLGLYVTGHPIDDYEKELRRFVRSRIVDIQPKRDTQ--VLAGLIVDMRVTKSKR 1006

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G  I ++T  + +   E   FP
Sbjct: 1007 GGNIAFMTLDDRSARIEVTVFP 1028


>gi|323525323|ref|YP_004227476.1| DNA polymerase III subunit alpha [Burkholderia sp. CCGE1001]
 gi|323382325|gb|ADX54416.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1001]
          Length = 1196

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1046 (38%), Positives = 603/1046 (57%), Gaps = 39/1046 (3%)

Query: 5    LE--KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            +     P FVHL++HS +S+ +G + L++++   A D Q A+A+TD  N F  + F ++A
Sbjct: 1    MSPMSDPRFVHLRLHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEA 60

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               G++PI GC + I   D+                ++LLV    GY  L EL+S+  L 
Sbjct: 61   RGKGVKPIAGCDVWITNPDDRDKP----------SRLLLLVKDRRGYLNLCELLSKASLT 110

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +Q +    +   WL+    EGL+ L+G   G I  A    + + A +  L + K+F    
Sbjct: 111  NQYRGRAEVEAGWLESGLGEGLLALSGAQQGDIGLALAAGNQEAARRNALHWAKVFPGGF 170

Query: 183  YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ LQR  +        Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++
Sbjct: 171  YIELQRCGQPGGEQYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILA 230

Query: 242  QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               R  R TP+ Y + + EM ++F+D+P AL N+VEIA+RC+  L++  P LP F   + 
Sbjct: 231  NPRRQKRFTPEQYFRTQDEMAALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDG 290

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYF 357
              +    ++ L + +  GLE RL Q    +       + Y QRL+FE   I +M F GYF
Sbjct: 291  MSL----DDYLVHLSKEGLEKRLEQLYPDEAERAAQRETYYQRLEFECGTIIKMGFPGYF 346

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPD
Sbjct: 347  LIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPD 406

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + K
Sbjct: 407  FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAK 466

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP  P   V++   + ++   +E    +  V +LLE++Q++EGL R+   HA G++I  
Sbjct: 467  LIPFKPGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAP 526

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593
              L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +     
Sbjct: 527  GKLTDFCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 586

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L  +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPG
Sbjct: 587  KDWSLGQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPG 646

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  +  RK+G+E +    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+L
Sbjct: 647  PMDLIPSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 706

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  EEM + +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++
Sbjct: 707  RRAMGKKKPEEMAQHRELFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLA 766

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            Y TAW+K H+P EF+AA+M+L MD+ +K+K   +D     + ++PP +N     F+    
Sbjct: 767  YYTAWLKAHHPAEFMAANMSLAMDDTDKVKILFEDCIVNKMAVLPPDINLSAYRFEPVAE 826

Query: 834  R-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                    I Y L AIKG G      I+ A  D PF  + DFC+R+D + +NRR +E+L+
Sbjct: 827  ADGKRSRTIRYGLGAIKGSGQNAIEEILRAREDGPFIDIFDFCNRIDRRVVNRRTIEALI 886

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AGA D    +R QL+ S+    + A+    N       +F       S    L      
Sbjct: 887  RAGAFDSLHQNRAQLIASVSLAMEAAEQASANAL--QAGLF-DMGDAPSQGHELVDEPEW 943

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                + + E+  LGFY SGH  D YK  +R+   +   E           +A ++ S + 
Sbjct: 944  PEKKKLQEEKAALGFYLSGHLFDAYKDEVRRFVRQKIGELKEGRDK---LVAGIIASLRT 1000

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + T++G  +      +   + E   F
Sbjct: 1001 QMTQRGK-MLIALLDDGTGQCEVTVF 1025


>gi|322435813|ref|YP_004218025.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX9]
 gi|321163540|gb|ADW69245.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX9]
          Length = 1176

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/1056 (38%), Positives = 606/1056 (57%), Gaps = 42/1056 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  ++ ++  +    Q ++A+TD  N+F A+ F   A   GI+PI
Sbjct: 5    FTHLHLHTDYSLLDGACDVDKLVAHVDKIGQKSVAMTDHGNIFGAVHFFNSAKKKGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+L I   ++    ++ K        +++L    EGY+ L+ L S   L     +  R
Sbjct: 65   LGCELYICQAED----HRAKGDGDKYNHLLVLAENQEGYRNLVRLTSEAALHG-FYRKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  ++L +  TEGLI  +G  +G + +         A+     F+++FG    ++ +Q H
Sbjct: 120  VSKNFLAK-HTEGLIGFSGCLAGEVSQHLMAGDYDKAKTTAGGFEEMFGRGNFFLEVQDH 178

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            +   D+     + ++    ++PL+ATN+S ++ ++D  AH+VL+ V  +  ++   R + 
Sbjct: 179  KLAPDKAVIEAMFRMEKDLDIPLIATNDSHYIEDQDARAHEVLLCVQTAGSMNDPKRFKF 238

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T + Y+K   EM   F D PE L  T++   RC+  L       P F     + ++   
Sbjct: 239  DTEEFYIKTAEEMARFFPDHPEVLSRTMQFPERCNLELNKVDNPFPDFPVPAGETLESYF 298

Query: 308  ENELRNKAVAGLEVRLAQGAI--AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            E   R       E  +A          +  DY  RL+ E++ I  MKF GYF+IV DFI+
Sbjct: 299  EQVCREGLKKRFETNVAHLERTGKLRKNKTDYEARLNREIDCIKAMKFPGYFMIVWDFIR 358

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A++  IPVGPGRGS AGS+ AY + ITD+DPL+  LLFERFLNP+R+SMPD DIDFC +
Sbjct: 359  YAREQGIPVGPGRGSAAGSLVAYCMEITDVDPLQNELLFERFLNPERISMPDIDIDFCMN 418

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI YVQ KYG ++VAQIITF ++ AKAA++DVGRAL MPY +VDR+ K+I      
Sbjct: 419  RRGEVIEYVQRKYGKDQVAQIITFNTMAAKAAIKDVGRALDMPYGEVDRIAKMIQGRIGV 478

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +S   + D+    +A  ++P +  L++ + +LEGL R A  HAAG+VI   PL++LVP+
Sbjct: 479  TISEV-LKDNGPLTKAYESEPQIRELIDTALRLEGLVRGAGVHAAGVVIAPSPLTELVPV 537

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
             R    +  VT ++M  IEK GL+K DFLGL TLT++  +L  +   RG  VDL+ I  D
Sbjct: 538  TRAKSEE-IVTSYDMGAIEKMGLLKMDFLGLTTLTVIDDALKLIKLTRGEDVDLATISLD 596

Query: 605  DHETYHLLTTKGTLG-IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            D +TY  +  +     +FQ ES GMR  L   +P+ +ED+ AL +LYRPGPI   +V  +
Sbjct: 597  DAKTYEQVFHRALTSGVFQFESGGMRDVLRRYKPNTVEDLTALNALYRPGPIQGGMVDEF 656

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK G+  +    P ++P+L+ET GV++YQEQVMQI+  L+G+SLS+AD+LRRAMGKK 
Sbjct: 657  IERKWGRRAVEYELPELEPILRETLGVMLYQEQVMQISNKLAGFSLSQADMLRRAMGKKD 716

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              EM KQK +F+ GA++N   K +A NIF+L+AKFA+YGFNKSH+AAYA+++Y TA++KT
Sbjct: 717  VAEMTKQKVKFMEGAAENKHPKAVAGNIFDLMAKFAEYGFNKSHSAAYALLAYHTAYLKT 776

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HY VEF+AA +T E    E + K+  + ++ NI ++PP V      F   D  I + LAA
Sbjct: 777  HYTVEFMAALLTSETSKPENVVKYISECKEINIAVVPPDVQISQPSFTPQDGAIRFGLAA 836

Query: 842  IKGVGTTTARHIMEAS----ADKP--FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            IK VG    + I++A     A+    F SL +FC +VD + LN+RVLESL+ AGA+DCFG
Sbjct: 837  IKNVGHNAIQSIIDARGALQAEGKDGFASLWEFCEKVDLRLLNKRVLESLIKAGAMDCFG 896

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------AHEKGTFSDKITLEKFSVENSS 949
              R  ++ +LDN    AQ  +K++      +F      +      +    L      +  
Sbjct: 897  K-RAAVMAALDNAMDRAQKAQKDKAAGQHGLFFGGIFDSDVPAAGAAVEALPNAPEWDEH 955

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT-------IRG----NNIRLA 998
             R +NE+ VLGF+ SGHP+D Y+  LR M +     +           RG    N I +A
Sbjct: 956  TRLQNEKDVLGFFVSGHPMDKYREKLRNMKVVDTATACEMKPEPQQFRRGGPEPNEISIA 1015

Query: 999  AMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
             ++   +  K+++ G         +   + E   FP
Sbjct: 1016 GVITGLKVAKSKRSGEMYAQAVLEDTTGKIELICFP 1051


>gi|294101731|ref|YP_003553589.1| DNA polymerase III, alpha subunit [Aminobacterium colombiense DSM
            12261]
 gi|293616711|gb|ADE56865.1| DNA polymerase III, alpha subunit [Aminobacterium colombiense DSM
            12261]
          Length = 1144

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1038 (35%), Positives = 595/1038 (57%), Gaps = 25/1038 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL VHS YSLL+GA+    + +++A+   PA+A+TD   ++ A+EF  +  A
Sbjct: 1    MTTRP-FVHLHVHSEYSLLDGAIRCGELAERVASWGMPAVALTDHGAMYGAIEFYDRCLA 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+GC++ +D + +     +G+        ++LL    +GY  LI+LVS     D 
Sbjct: 60   AGIKPIVGCEVYVDPEGHTSREKKGRN-----FHLLLLAENQQGYNNLIKLVSIANT-DG 113

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 RI    L +  ++G+I  +   +G I           A  +   ++ + G D  +
Sbjct: 114  FYYRPRIDYDLLTQY-SQGIIASSACLAGEIPSLILQGKENDALAKAHMYRDIMGEDNFF 172

Query: 184  VNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +  +   ++   ++ +VQ+A  +   LVATN++ +L++EDY+ H++L+ V     ++ 
Sbjct: 173  LEIMYNAIPEQAVVNRSLVQMARKNNFNLVATNDAHYLNKEDYDWHEILLCVQTGATIND 232

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             DR   + + +     E +               +A      L+         +      
Sbjct: 233  PDRMSFSTNDFYLRSPEEMDSLFGAELPDALDNTLAIAERCSLKFDLGTRDYKLPSFDLP 292

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +  E+ L  +A+AGL+ RL +  +      ++Y++RLD+EL VI +M F+GYFLIVA 
Sbjct: 293  EGETLESNLEKEAMAGLKQRLHKDNV-----PEEYKKRLDYELKVIKKMGFAGYFLIVAS 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             I+ AK  +IP+GPGRGS AGS+ AY+L IT++DPL+++LLFERFLNP+R+SMPD D D 
Sbjct: 348  IIRAAKDRDIPIGPGRGSAAGSLVAYSLRITELDPLKYNLLFERFLNPERVSMPDIDTDV 407

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
                R+E+++Y+  KYG +RVAQIITF  +++KAA+RDVGRAL MPYS VD + KLIP  
Sbjct: 408  SDKGREELLQYIAEKYGVDRVAQIITFDRMKSKAAIRDVGRALGMPYSDVDVVAKLIP-- 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                   +A+      R     D +V RLL+ + K+EGL RH S HAAG+VI   P++ L
Sbjct: 466  DGARSIPEALDQSEDLRNLTHKDLAVSRLLDSASKIEGLARHCSQHAAGVVITPMPITDL 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601
            VP+ R    +  VTQF M+ +EK GL+K DFLGLKTL++L+++++ +        DL+ I
Sbjct: 526  VPVRRIG-ENQIVTQFPMEPLEKLGLVKMDFLGLKTLSVLEEAINNIKLNGKTPPDLNKI 584

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
            P +D+ TY +L    TLG+FQLES+GMRQ L  ++PDC ED+IA+++LYRPGP+ + +V 
Sbjct: 585  PLNDNLTYEMLQRGNTLGVFQLESTGMRQLLRKIKPDCFEDLIAVLALYRPGPLGSGMVD 644

Query: 661  -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y  RK+G+  +  +HP +  +LKET GVI+YQEQVMQ A  L+GYSL EAD+LRRAMGK
Sbjct: 645  QYIERKHGRAVVEYLHPELSEVLKETYGVILYQEQVMQSAACLAGYSLGEADLLRRAMGK 704

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  E M +Q++ F  G +++ +    A  IF+++ +FA YGFNKSH+AAYA+ISYQTA++
Sbjct: 705  KKVEVMQQQRKMFADGCAQHNVPARKAEEIFDIIQEFAGYGFNKSHSAAYALISYQTAYL 764

Query: 780  KTHYPVEFLAASMTLEMDNVEKIK-KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            K ++  EF+AA +T ++ + + +  ++ ++ R   I+++PP VN+    F   D  + + 
Sbjct: 765  KANFQPEFMAAYLTSQIGSKKDVMARYIREVRNSGIEVLPPDVNSSMESFAAVDEVVRFG 824

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L A+   G      I+ A      F SL +F  RVD + +N+ V+E+L+ AGA D    +
Sbjct: 825  LGAVAKAGHGAVEAIIAARECGGEFSSLWNFLCRVDLRVVNKSVIENLIKAGAFDGLNSN 884

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTN-KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R QL+ +L +    AQ   + +      ++   +  +   +  L          R + E+
Sbjct: 885  RRQLISALPDFVALAQRKGEEKNQCSLLSLLDEDSESGDLEPELPDIEDYAIYERLDMEK 944

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRI 1015
             V+G Y SGHP   ++ ++ +               N   ++  M++S  +K T++G  +
Sbjct: 945  EVVGLYISGHPFTQHETLVSRYSTCSISNLKYWRSRNLFPQIGGMILSVHEKYTKRGDPM 1004

Query: 1016 GWVTFSEPAKEYEANFFP 1033
            G +   +   + E   FP
Sbjct: 1005 GILEVEDAESKLEVICFP 1022


>gi|119026148|ref|YP_909993.1| DNA polymerase III subunit alpha [Bifidobacterium adolescentis ATCC
            15703]
 gi|118765732|dbj|BAF39911.1| DNA polymerase III alpha subunit [Bifidobacterium adolescentis ATCC
            15703]
          Length = 1196

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/1082 (31%), Positives = 546/1082 (50%), Gaps = 64/1082 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S +FV L  H+ YSLL+GA  + +++ +      PA+ ITD  N+  A E    A  
Sbjct: 1    MATSANFVQLHNHTHYSLLDGASKIPDLVKRAKELGMPAVGITDHGNMHGAYEMWSAAVN 60

Query: 65   AGIQPIIGCQLDIDMQD---------------------NLKMTNQGKTPFPTVPSIVLLV 103
            AGI+PIIG +  +  +                      + +      +    +  + +  
Sbjct: 61   AGIKPIIGIEAYVTPETARQDPTRVSWDTNWNPDLDPLHRRRNPDDVSGGGVITHLTMWA 120

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
               EG   L++  +   L  +  +  R+    L +  ++G+I  +G  SG I        
Sbjct: 121  ENDEGLVNLMKASTDANLEGRVMRYPRMDKEILAKY-SKGIIASSGCPSGIIQTRLRLGQ 179

Query: 164  SQVAEKRLLTFKKLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLS 221
               A +    F+ +FG D  Y+    H    ++     ++ +A     PL+ATN+S +  
Sbjct: 180  FDDALRAAGEFQDIFGRDNFYIEFMDHGLKIEKQVTDGLLDIAKKLNAPLLATNDSHYTR 239

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
             ED  A D ++ +   + + +  R +     +Y+K+  EM  +F DLPEA +NT+EIA R
Sbjct: 240  AEDAGAQDAMLCINSGSTLDEPGRFKFDGTGYYIKSAEEMRELFKDLPEACDNTLEIAER 299

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
            C+ +   H            +    +E +    K   GLE R        G  + +  ++
Sbjct: 300  CNVMFDDHEDGAFMPQFDCPEG--WDETSLFLKKVEEGLERRY------NGKPSLEVLRQ 351

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
             D+E  VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DPL  
Sbjct: 352  ADYECGVICQMQFCGYFLVVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPLEH 411

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             L+FERFLNP+R+S+PD D+DF  D R  V+ YV  KYG ++VAQ + +G+++ K AL+D
Sbjct: 412  GLIFERFLNPERVSLPDIDVDFDPDGRGRVLDYVGEKYGRDKVAQCVIYGTIKTKQALKD 471

Query: 461  VGRALQMPYSQVDRLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDR 510
              R +   +S  D++ K +P        + L  I D S         FRE   +DP   R
Sbjct: 472  SARIMGYDFSVGDKITKALPPAQTGGKDIPLHDIFDPSAKRYAEAREFRELYDSDPDTKR 531

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            + + +  +EGL R    HA   ++G  P++   P+  +       T       E  GL+K
Sbjct: 532  ITDEAMGIEGLIRQTGVHACATIMGSEPITNTSPL-LERTDGTVTTTLEYHTCETLGLVK 590

Query: 571  FDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             DFLGL  LT+++ +L+ +      ++D + IP DD  TY LL+   TLG+FQL+S GMR
Sbjct: 591  MDFLGLSNLTVIRDTLNNIEANGKERIDHTKIPLDDRPTYDLLSRGDTLGVFQLDSDGMR 650

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLK 683
              L+ ++P+   DI AL++LYRPGP+D      Y  RKNG +KI  IHP     +  +L 
Sbjct: 651  SLLKTLKPNNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKEVLD 710

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+I+YQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+
Sbjct: 711  ETYGLIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFAGMKEHGYSE 770

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
              A  ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K  
Sbjct: 771  EAAQAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKDKTA 830

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KP 861
             +  +AR+  IQ++ P VN    ++    + + + L AI+ VG      I+    +    
Sbjct: 831  LYLGEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGKNAVDAIIAERENGHGK 890

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + +  DF  RV  + LNRR++ESL+ AGA D    +R  L    +        +++ +  
Sbjct: 891  YVNFTDFIKRVPLEALNRRLVESLIKAGAFDSIDPNRRALFTIHETAINSVVGLKRKQAE 950

Query: 922  KHENIFAHEKGTFSDK-------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
               ++FA    +  +        + +      +   +   E+ +LG Y S HPL   + I
Sbjct: 951  GQFDLFADLDDSKENDSAMGDAMVQVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQSI 1010

Query: 975  LRKMGIKGYEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            L  +        +        G  + +A ++ +  ++ ++KG+    VT  +     +  
Sbjct: 1011 LVSLREMSIAHLIDRAGSMPDGQQVTIAGLITNVDRRVSKKGNPWAIVTVEDLESSIQCM 1070

Query: 1031 FF 1032
            FF
Sbjct: 1071 FF 1072


>gi|329850615|ref|ZP_08265460.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19]
 gi|328840930|gb|EGF90501.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19]
          Length = 1133

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 492/1026 (47%), Positives = 677/1026 (65%), Gaps = 23/1026 (2%)

Query: 15   QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +V S+YSLLEGA+   ++      +  PA+AITD  NL+  LEFSQ    +G+QPI+GC 
Sbjct: 2    RVRSAYSLLEGAIKAYDMGKLAHKNGMPAVAITDRCNLYGGLEFSQSCKDSGVQPIVGCA 61

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            L +            +     +P+ V+L    +G+  L +L S  Y+         +   
Sbjct: 62   LPVKGIGGTPTEKWAR-----IPTFVVLCQNEQGWLNLTKLSSIAYVDSDNMDEPHVTWD 116

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR 194
             +     EGL++L+G   GP+D  F  N     +  L +   +FGDR Y+ LQRH G  +
Sbjct: 117  QVTA-HNEGLLLLSGSYDGPVDVLFRQNRPDEGKAALKSMLDVFGDRFYIELQRHEGRPK 175

Query: 195  --YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
                E+ +V+ AY +++PLVATN++ F   + Y AH+ L+ ++ ST +  +DR RVT DH
Sbjct: 176  GSATEAGLVEFAYQNDVPLVATNDAYFAGADMYRAHEALLCISDSTFMGIEDRRRVTKDH 235

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            + K  + M  +F+DL EA +NT+EIARRC+F++    PILPRF         + E+ EL 
Sbjct: 236  WFKPAAAMRELFADLTEACDNTIEIARRCAFLVNKRDPILPRFDT----GAGRNEDEELA 291

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
             +A  GL++RL Q  +A     +DY  RL+ E+ VI +M F GYFLIV+DFI+W K + +
Sbjct: 292  WQAREGLKMRLKQVKLAC--PEEDYWARLEREIGVIQKMGFPGYFLIVSDFIKWGKSHGV 349

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
            PVGPGRGSGAGS+ A+ALTITD+DPLRF LLFERFLNP+R+SMPDFDIDFCQ+RR+EVI 
Sbjct: 350  PVGPGRGSGAGSLVAWALTITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQERREEVIS 409

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQA 491
            YVQ+KYG +RVAQIITFG+LQA+A LRDVGR +Q+P  QVDRLCK++PN+PA+P +  QA
Sbjct: 410  YVQHKYGRDRVAQIITFGTLQARAVLRDVGRVMQLPLGQVDRLCKMVPNNPANPTTLAQA 469

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
            I  + R REAR  D  V  LL+ + KLEGLYR+ASTHAAGIVIGDRPL++LVP+YRD RS
Sbjct: 470  IEIEPRLREARDDDEQVKNLLDTALKLEGLYRNASTHAAGIVIGDRPLTELVPLYRDPRS 529

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            D+P TQFNMKW+E AGL+KFDFLGLKTLT+L ++  +L +RGV ++ S++P DD  TY L
Sbjct: 530  DIPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAERYLKKRGVDINFSILPLDDTATYEL 589

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
            L +  ++G+FQLES GMR  L  ++   +E+I AL+SLYRPGPIDNI  Y +RK G+ +I
Sbjct: 590  LASGQSIGVFQLESQGMRDTLRKLRCSSLEEITALISLYRPGPIDNIDTYVDRKFGRMEI 649

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              +HP ++P+LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKK KEEMD QK R
Sbjct: 650  DMLHPSLEPVLKETYGVIIYQEQVMQIAQVLSGYSLGEADLLRRAMGKKKKEEMDLQKVR 709

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            F++GA + G+ +  +  IFEL+ KFA YGFNKSHAAAYA ISYQT ++K ++PVEF AAS
Sbjct: 710  FMTGAKEKGVPEAQSDFIFELVNKFAGYGFNKSHAAAYAFISYQTGYLKANHPVEFFAAS 769

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
             +L++ N +K+  F QDAR+F + I+PP +N    DF V +  + Y+L AI+ VG    +
Sbjct: 770  FSLDIANTDKLAVFYQDARRFGVPIVPPDINRSMADFDVENGELLYALGAIRNVGFEAMQ 829

Query: 852  HIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
             +++A  +   F  L DF  R+D K +NRR +E+L  AGA D    +R Q++ + D +  
Sbjct: 830  SVVQAREEGGKFTDLFDFLERIDPKAVNRRAIENLAKAGAFDSIHPNRAQIVAAADMLIA 889

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            YAQ V   R +   ++F     +   +  L K +      R + E   +GFY SGHPL  
Sbjct: 890  YAQSVAAERASSQVSLFGSTDAS---RPRLPKVAASAGPERLDEELAAIGFYLSGHPLQD 946

Query: 971  YKPILRKMGIKGYEESV--ATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
               + ++  I  Y E++  A    +  R+A +V  +Q++     G +  +VT S+P+ EY
Sbjct: 947  MLDVFKRRKITLYAEAMSLALEGHDAFRMAGIVRRRQERAAAGSGEKFAFVTLSDPSGEY 1006

Query: 1028 EANFFP 1033
            E   FP
Sbjct: 1007 EV-LFP 1011


>gi|237752431|ref|ZP_04582911.1| DNA polymerase III subunit alpha [Helicobacter winghamensis ATCC
            BAA-430]
 gi|229375920|gb|EEO26011.1| DNA polymerase III subunit alpha [Helicobacter winghamensis ATCC
            BAA-430]
          Length = 1164

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1053 (35%), Positives = 586/1053 (55%), Gaps = 36/1053 (3%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             + ++P F HL +H+ YSLL+G   +  +  KI      ++A+TD  N+F A+EF +   
Sbjct: 1    MMSQTPKFTHLHLHTEYSLLDGLNKVKVLAKKIKEYGMDSVAVTDHGNMFGAIEFYKAMK 60

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            A GI+PI+G +  +   + +   +  +        + L     EGY+ L+ L S+  L  
Sbjct: 61   AEGIKPILGMEAYLHNAEEISDKSNQR------FHLCLYAKNLEGYKNLMYLSSQACLYG 114

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF--------FNSSQVAEKRLLTFK 175
                  RI    L+E  + GLI  +   +G +                 + A++  L +K
Sbjct: 115  -FHMKPRISKKMLRE-HSAGLICSSACLNGEVQWHLNTKKDDNKGRKGYERAKEVALEYK 172

Query: 176  KLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            ++FG+  Y+ L RH   ++   ++Q+++L+    + ++ATN++ + ++ D  A +V   +
Sbjct: 173  EIFGEDFYLELMRHGIEEQQLIDNQLLKLSQETGIKIIATNDTHYANQSDSTAQEVAFCI 232

Query: 235  AHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
                     +R R T  + Y+K   +M  +++DLPEALE+T EIA +C+  L +  P  P
Sbjct: 233  GFGKDFDDPNRMRHTVQEFYIKTPEQMAELYADLPEALEHTQEIANKCNLELHLGDPTPP 292

Query: 294  RFIEKECDDIQKEEE-----NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             F   +     +  +          K   GL+ RL            +Y +RL+ E+ +I
Sbjct: 293  SFKFTQEYAKAEGLDFTQDSEYFAYKCREGLKKRLLNVP---QEKHTEYAERLEREIEII 349

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
              MKF GY LIV DF++ AK+  IPVGPGRGS AGS+ A+ L IT+IDPL++ LLFERFL
Sbjct: 350  NSMKFPGYMLIVWDFVRAAKERGIPVGPGRGSAAGSLVAFCLEITNIDPLKYDLLFERFL 409

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D+DFCQ RR E++ YV  KYG   VAQ+ITFG ++AKA +RDV R + MP
Sbjct: 410  NPERVSMPDIDMDFCQSRRGEILDYVTEKYGRHNVAQVITFGMMKAKAVIRDVARVMGMP 469

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            Y+  D   KLIP +    +       + +  E    DP   ++ E +  LEG  R+  TH
Sbjct: 470  YNDADSFAKLIPKELEITLEDA-FNKEPKIAELISRDPLAKKVWEFALILEGTKRNPGTH 528

Query: 529  AAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            AA +VI   + L    P+YR  R  +  TQ++MK++E   LIKFDFLGLKTLT++  +L 
Sbjct: 529  AAAVVIDSTQELWHKAPLYRSQRDGIIATQYSMKYLEDVDLIKFDFLGLKTLTVVDDALK 588

Query: 588  FLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             + +R   ++D   I  +D + Y  L +  TLG+FQ+ESS  +   + M+P   EDIIA 
Sbjct: 589  LIEKRSGKRIDFLNIDVNDKKVYETLQSGNTLGVFQIESSMFQGINKRMRPSTFEDIIAT 648

Query: 647  VSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            ++L RPGP+++ +   + NRK+GKE IV +   ++P+L+ T G I+YQEQVMQI Q + G
Sbjct: 649  IALGRPGPLESGMVDDFINRKHGKEPIVYMFDELEPILRPTYGTIVYQEQVMQIVQRIGG 708

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            +SL  AD++RRAMGKK  + M   K +F  GA   G  +  A  ++EL+ KFA YGFNKS
Sbjct: 709  FSLGGADLIRRAMGKKDAQIMADNKSKFADGAVAQGFDRAKAEELWELIVKFAGYGFNKS 768

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAYA+I+++TA++KT+YP EF+AA +T E ++ +K+ ++ ++A Q  I+++PPS+   
Sbjct: 769  HSAAYAMITFETAYLKTYYPKEFMAALLTSEKNDTDKVVEYTEEANQMGIKVLPPSIQKS 828

Query: 825  CVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNR 879
             ++F V    G+  I + L AIKG G      I+E    +  F  LEDF  R+D  K+N+
Sbjct: 829  ELEFSVAEVDGEASILFGLGAIKGAGEIAINIILEERKQNGNFKDLEDFLKRIDPSKVNK 888

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            + LE+ + +GALD  GY+R  LL+ ++++ + A+  +  +     ++F +++     ++ 
Sbjct: 889  KSLEAFIKSGALDGMGYTRKSLLEQVESLTEAAKLSQTAQKEAAGSLFGNDEELMRVQLD 948

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
            L+     +     E E+  LGFY SGHPLD YK   +++      +       + I +  
Sbjct: 949  LQDLGEYSQKEILEFEKESLGFYASGHPLDAYKESFKEIDYTPSNQVKDVAENSRILILG 1008

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +     K ++ G R G +   +     E   F
Sbjct: 1009 QIEDIIVKFSKTGKRYGMLKIQDLYGSVELTIF 1041


>gi|218529177|ref|YP_002419993.1| DNA polymerase III subunit alpha [Methylobacterium chloromethanicum
            CM4]
 gi|218521480|gb|ACK82065.1| DNA polymerase III, alpha subunit [Methylobacterium chloromethanicum
            CM4]
          Length = 1173

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 519/1050 (49%), Positives = 704/1050 (67%), Gaps = 33/1050 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHSSYSLLEG +   +++   AAD+QPA+A+TDTNNLF ALEFS+ A  AGIQPI
Sbjct: 10   FVHLHVHSSYSLLEGGVKAGDLVKAAAADRQPALALTDTNNLFGALEFSEYAAKAGIQPI 69

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G QL I  +         + P     +IVLL     GY  L+ L SR +       +  
Sbjct: 70   AGLQLTICFE---APDPMARLPQAGCANIVLLAQDETGYGNLLRLGSRAHFDGPLGAAPN 126

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
            + +S L E   EGLI LTGG SGP+D +        A +RL   K  FG+  LYV +QRH
Sbjct: 127  LAVSVL-EGNVEGLIGLTGGLSGPLDTSLRAGRVDQAARRLEILKGAFGEEHLYVEIQRH 185

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D    E ++++LA T+ L +VATN   F    DY+AHD L+A+A   +VS + R R+
Sbjct: 186  GLDDERAVERELLRLADTNGLGIVATNEPFFAKPGDYDAHDALLAIAEGRLVSDERRRRL 245

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF------IEKECDD 302
            TP H    R+ M+ +F DLP+AL  +VEIA RCS+  +   PILP F            D
Sbjct: 246  TPRHAFTTRAAMMELFRDLPDALSASVEIAMRCSYRARTRKPILPNFASVAAGEAPPMAD 305

Query: 303  IQKEEEN------------ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
               E               EL  +A AGLE+RL Q   A G+  +DYR RL FEL+VI +
Sbjct: 306  ALAEAAETPVQAVAADEPTELCRQAEAGLELRLKQHGTAPGFTEEDYRARLKFELDVIVK 365

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            MKF GYFLIV+DFI+WAK ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFERFLNP
Sbjct: 366  MKFPGYFLIVSDFIKWAKDHDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFERFLNP 425

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFDIDFC + R+ VIRYVQ +YG  +V QIITFG+L A+  LRDVGR L+MPY 
Sbjct: 426  ERVSMPDFDIDFCVEGRERVIRYVQQRYGERQVGQIITFGTLLARGVLRDVGRVLEMPYG 485

Query: 471  QVDRLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            QVD+L KL+P +PA+PV+  QAI  + + ++A   +P V RL+EIS+KLEGL+RHASTHA
Sbjct: 486  QVDKLTKLVPQNPANPVTLAQAIEGEPKLQQAIEEEPIVARLIEISKKLEGLHRHASTHA 545

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            AG+VIGDRPL +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+   D L
Sbjct: 546  AGVVIGDRPLEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRCCTDLL 605

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
             QRG++VDL+ IP DD +TY  +    T+ +FQ+ES+GMR+AL  MQ D +EDIIALV+L
Sbjct: 606  KQRGIEVDLAQIPLDDKKTYEPMGRGETVAVFQVESAGMRKALCEMQADRLEDIIALVAL 665

Query: 650  YRPGPIDNIVVYNNRKNGKEK----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            YRPGP+ NI VY  RK G++         HP+++P+LKET G+I+YQEQVM++A++L+GY
Sbjct: 666  YRPGPMANIPVYCERKLGRDAGNEASWYSHPMLEPILKETFGIIVYQEQVMEVAKVLAGY 725

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L EAD+LRRAMGKKIK EMD Q++RF+ G ++NG++K  A  IF+LLAKFADYGFNKSH
Sbjct: 726  TLGEADMLRRAMGKKIKAEMDAQRDRFVKGCTENGLTKAKADEIFDLLAKFADYGFNKSH 785

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            AAAYA+++YQTA++K ++PVEFLAA+MTL++DN +K+ +F QDA++  I + PPSVNT  
Sbjct: 786  AAAYALVTYQTAYLKANHPVEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPSVNTSG 845

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            V F V + RI Y+LAAIKGVG +    I+ A  DKPF  L  F  R++ + +N+R LE+L
Sbjct: 846  VVFDVREGRILYALAAIKGVGRSAVESIVAARGDKPFKDLACFARRLNPRHVNKRTLENL 905

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            + AGALDC    R +   +++ + K AQ   +  T+   ++F     +    + +     
Sbjct: 906  IAAGALDCIEPDRARAWAAVEPMMKMAQGAAEAETSGITDMFGGV-ASVDVALRIPPHEF 964

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI---RLAAMVV 1002
               + + + E   +GF+ SGHPLD Y PIL K+ ++ + +    +R       R+AA V+
Sbjct: 965  WTHTDKLKRECDAIGFFLSGHPLDEYGPILEKLRVQSWADFCRAVRAGTASVGRIAASVL 1024

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + +++T+ G+++G V  S+    +EA  F
Sbjct: 1025 DRSERRTKSGNKLGIVILSDQTGHFEAIIF 1054


>gi|331696645|ref|YP_004332884.1| DNA polymerase III subunit alpha [Pseudonocardia dioxanivorans
            CB1190]
 gi|326951334|gb|AEA25031.1| DNA polymerase III, alpha subunit [Pseudonocardia dioxanivorans
            CB1190]
          Length = 1185

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/1073 (31%), Positives = 536/1073 (49%), Gaps = 52/1073 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +T     + SFVHL  H+ +S+L+GA  L+++  + A    PA+A+TD  N++ A EF +
Sbjct: 1    MTAA--STDSFVHLHTHTEFSMLDGAARLDDLFRESAKMGMPALAMTDHGNVYGAYEFWR 58

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQ--------GKTPFPTVPSIVLLVSTAEGYQRL 112
            KA AAG++PIIG +  +      +               P      + LL    EG   L
Sbjct: 59   KAKAAGVKPIIGMEGYLSPGSRHERKRATLGGQTVSDDNPGEMYTHMTLLAENTEGMHNL 118

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
              L S   L +      R+    L+  G +G+I  TG  SG + R    +    A +   
Sbjct: 119  FRLSSLASL-EGYYYKPRMDRELLETYG-KGIIATTGCPSGEVARLLQQDRYDDACQAAS 176

Query: 173  TFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             ++ +FG D  Y  L  H    ++  +  + +L     LP +ATN+  +   ED + H+V
Sbjct: 177  DYRDIFGRDNFYCELMDHGIEIEKRVQEDLFRLKKELGLPGLATNDLHYTYAEDTKPHEV 236

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            L+ V     ++  +R +     +    +  +    D          +       +     
Sbjct: 237  LLCVQTGKTLADPNRFKFDAQDFYLKSAAEMRAQWDPIHPEACDNTLLIAERVDVSFTEG 296

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                      +   + EE+ L  +   GL  R   G        + YR++ ++EL+VI +
Sbjct: 297  QDLMPRAPVPEG--ETEESWLVKEVEKGLHRRFPNGV------TEQYRKQAEYELSVIIQ 348

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F GYF++ AD IQ AKK  I  GPGRGS AGS+ AY L ITD+DP++  L+FERFLNP
Sbjct: 349  MGFPGYFIVTADLIQHAKKVGIRCGPGRGSAAGSLVAYVLGITDLDPIKHKLIFERFLNP 408

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR--ALQMP 468
            +R+SMPD D+DF + RR E+IRY   KYG +R+AQIIT+ +++AKAA++D  R    Q  
Sbjct: 409  ERISMPDIDMDFDERRRGEMIRYTTEKYGEDRIAQIITYSTIKAKAAIKDSARVLFGQPG 468

Query: 469  YSQVDRLCKLIPN-DPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLE 519
            YS  DR+ K +P       +          +  ++ +  R    ADP V  +++ ++ LE
Sbjct: 469  YSVADRITKAMPPAIMGKDIPLSGIFDPGHKRYSEATEVRALYEADPQVREIIDTARGLE 528

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG+++  +PL  ++P+ R       +TQF+M   E  GL+K DFLGL+ L
Sbjct: 529  GLKRQWGVHAAGVIMSSKPLLDVIPIQRREADGAIITQFDMGACETLGLLKMDFLGLRNL 588

Query: 580  TLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  +L+ +   G     +  +  DD +TY LL    TLG+FQL+   MR  L  M P 
Sbjct: 589  TIIDDALENIELNGKPPLVIEDVELDDPKTYDLLARGDTLGVFQLDGGPMRDLLRRMAPT 648

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692
              +DI A+ +LYRPGP+  +    Y +RKN ++++  IHP +   LK+    T G+I+YQ
Sbjct: 649  EFDDISAVGALYRPGPMGANAHNDYADRKNKRQEVTPIHPELAEPLKDILGETYGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVM IAQ L+GY+L +AD+LRRAMGKK KE +DK+ E F  G   +G S      ++++
Sbjct: 709  EQVMAIAQKLAGYTLGKADLLRRAMGKKKKEILDKEYEGFAQGMKDHGYSADAVKTLWDI 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  F+DY FN++H+AAY V+SY TA++K +YP E++AA +T   D+ +K   +  + R+ 
Sbjct: 769  LLPFSDYAFNRAHSAAYGVVSYWTAYLKANYPAEYMAAVLTSVRDDKDKAAVYLAECRRM 828

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
             I ++PP VN    +F    + I + L AI+ VG      I+ A  +   F    DF  +
Sbjct: 829  GITVLPPDVNESVRNFAPVGDDIRFGLGAIRNVGFNVVDAIVAARKEKGAFSDFSDFLRK 888

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            VD+   N++V+ESL+ AGA D  G+SR  LL    +        +K  +    ++F    
Sbjct: 889  VDAVVCNKKVIESLIKAGAFDSLGHSRKGLLLVHADAIDAVMSTKKAASMGQFDLFGSMD 948

Query: 932  GTFSDKITL---------EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
            G   D                   ++  R   E+ +LG Y SGHPL   + +L       
Sbjct: 949  GGDGDDSDPALAGIFDVKVPTDEWDTKHRLAVEREMLGLYVSGHPLHGVEGVLAAKADTP 1008

Query: 983  YEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +  +      G  + +  ++    ++  + G         + A   E  FFP
Sbjct: 1009 IQNILDGTVGDGAQVTVGGILAGVNRRVNKNGEPWASAQIEDLAGGIEVLFFP 1061


>gi|154488936|ref|ZP_02029785.1| hypothetical protein BIFADO_02245 [Bifidobacterium adolescentis
            L2-32]
 gi|154083073|gb|EDN82118.1| hypothetical protein BIFADO_02245 [Bifidobacterium adolescentis
            L2-32]
          Length = 1196

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/1082 (31%), Positives = 546/1082 (50%), Gaps = 64/1082 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S +FV L  H+ YSLL+GA  + +++ +      PA+ ITD  N+  A E    A  
Sbjct: 1    MATSANFVQLHNHTHYSLLDGASKIPDLVKRAKELGMPAVGITDHGNMHGAYEMWSAAVN 60

Query: 65   AGIQPIIGCQLDIDMQD---------------------NLKMTNQGKTPFPTVPSIVLLV 103
            AGI+PIIG +  +  +                      + +      +    +  + +  
Sbjct: 61   AGIKPIIGIEAYVTPETARQDPTRVSWDTNWNPDLDPLHRRRNPDDVSGGGVITHLTMWA 120

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
               EG   L++  +   L  +  +  R+    L +  ++G+I  +G  SG I        
Sbjct: 121  ENDEGLVNLMKASTDANLEGRVMRYPRMDKEILAKY-SKGIIASSGCPSGIIQTRLRLGQ 179

Query: 164  SQVAEKRLLTFKKLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLS 221
               A +    F+ +FG D  Y+    H    ++     ++ +A     PL+ATN+S +  
Sbjct: 180  FDDALRAAGEFQDIFGRDNFYIEFMDHGLKIEKQVTDGLLDIAKKLNAPLLATNDSHYTR 239

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
             ED  A D ++ +   + + +  R +     +Y+K+  EM  +F DLPEA +NT+EIA R
Sbjct: 240  AEDAGAQDAMLCINSGSTLDEPGRFKFDGTGYYIKSAEEMRELFKDLPEACDNTLEIAER 299

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
            C+ +   H            +    +E +    K   GLE R        G  + +  ++
Sbjct: 300  CNVMFDDHEDGAFMPQFDCPEG--WDETSLFLKKVEEGLERRY------NGKPSLEVLRQ 351

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
             D+E  VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DPL  
Sbjct: 352  ADYECGVICQMQFCGYFLVVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPLEH 411

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             L+FERFLNP+R+S+PD D+DF  D R  V+ YV  KYG ++VAQ + +G+++ K AL+D
Sbjct: 412  GLIFERFLNPERVSLPDIDVDFDPDGRGRVLDYVGEKYGRDKVAQCVIYGTIKTKQALKD 471

Query: 461  VGRALQMPYSQVDRLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDR 510
              R +   +S  D++ K +P        + L  I D S         FRE   +DP   R
Sbjct: 472  SARIMGYDFSVGDKITKALPPAQTGGKDIPLHDIFDPSAKRYAEAREFRELYDSDPDAKR 531

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            + + +  +EGL R    HA   ++G  P++   P+  +       T       E  GL+K
Sbjct: 532  ITDEAMGIEGLIRQTGVHACATIMGSEPITNTSPL-LERTDGTVTTTLEYHTCETLGLVK 590

Query: 571  FDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             DFLGL  LT+++ +L+ +      ++D + IP DD  TY LL+   TLG+FQL+S GMR
Sbjct: 591  MDFLGLSNLTVIRDTLNNIEANGKERIDHTKIPLDDRPTYDLLSRGDTLGVFQLDSDGMR 650

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLK 683
              L+ ++P+   DI AL++LYRPGP+D      Y  RKNG +KI  IHP     +  +L 
Sbjct: 651  SLLKTLKPNNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKEVLD 710

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+I+YQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+
Sbjct: 711  ETYGLIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFAGMKEHGYSE 770

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
              A  ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K  
Sbjct: 771  EAAQAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKDKTA 830

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KP 861
             +  +AR+  IQ++ P VN    ++    + + + L AI+ VG      I+    +    
Sbjct: 831  LYLGEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGKNAVDAIIAERENGHGK 890

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + +  DF  RV  + LNRR++ESL+ AGA D    +R  L    +        +++ +  
Sbjct: 891  YVNFTDFIKRVPLEALNRRLVESLIKAGAFDSIDPNRRALFTIHETAINSVVGLKRKQAE 950

Query: 922  KHENIFAHEKGTFSDK-------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
               ++FA    +  +        + +      +   +   E+ +LG Y S HPL   + I
Sbjct: 951  GQFDLFADLDDSKENDSAMGDAMVQVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQSI 1010

Query: 975  LRKMGIKGYEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            L  +        +        G  + +A ++ +  ++ ++KG+    VT  +     +  
Sbjct: 1011 LVSLREMSIAHLIDRAGSMPDGQQVTIAGLITNVDRRVSKKGNPWAIVTVEDLESSIQCM 1070

Query: 1031 FF 1032
            FF
Sbjct: 1071 FF 1072


>gi|254505207|ref|ZP_05117358.1| DNA polymerase III, alpha subunit subfamily, putative [Labrenzia
            alexandrii DFL-11]
 gi|222441278|gb|EEE47957.1| DNA polymerase III, alpha subunit subfamily, putative [Labrenzia
            alexandrii DFL-11]
          Length = 1138

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 542/1024 (52%), Positives = 710/1024 (69%), Gaps = 12/1024 (1%)

Query: 15   QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +VHS+ SLLEGAL +  +LD   AD QPA+AI DTNNLF A EFS KA  AGIQPI  CQ
Sbjct: 2    RVHSALSLLEGALPIKRLLDLAKADDQPALAIADTNNLFGAQEFSSKAWGAGIQPITACQ 61

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            L +   D L     G+   P +  +VL+  T  GY  L+EL SR +L  +      + +S
Sbjct: 62   LSVFFDDGLD---SGRRGEPALADLVLIAMTETGYGNLMELTSRAFLDTETGLRPHVSIS 118

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY-D 193
            +L +   + +I+LTGGS G I          +A+ RL T    F  R YV +QRH    +
Sbjct: 119  YLLQKAQD-VIVLTGGSLGAIGAPLLAGRKDLAKSRLKTLDDGFAGRCYVEIQRHGMESE 177

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            R  E   + LAY   LPLVATN + F + EDYEAHD L+ ++   V+ + DR R+TP+HY
Sbjct: 178  RKTEEAFLDLAYEMGLPLVATNEAFFPAREDYEAHDALICISEGRVLIESDRRRLTPEHY 237

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE--L 311
             K R+EM  +F+DLPEAL +T+EIA+RCSF     APILPRF   + D  + E      L
Sbjct: 238  FKTRAEMCVLFADLPEALASTIEIAQRCSFRPMTRAPILPRFAGADADPEEAERAETEEL 297

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            + +A  GL+ RL    +A G   +DY  RLD+E  +I RMKF GYFLIVADFI+WAK ++
Sbjct: 298  KRQAREGLQARLDAHGLAPGLEEKDYWDRLDYETGIIERMKFPGYFLIVADFIKWAKNHD 357

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            IPVGPGRGSGAGS+ A++LTITD+DP+RFSLLFERFLNP+R+SMPDFDIDFCQ RR+EVI
Sbjct: 358  IPVGPGRGSGAGSLVAWSLTITDLDPMRFSLLFERFLNPERVSMPDFDIDFCQSRREEVI 417

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQ 490
            RYVQ KYG ++VAQIITFGSLQA+A LRDVGR LQMPY QVDRLCKL+P +PA+PV+  Q
Sbjct: 418  RYVQEKYGRQQVAQIITFGSLQARAVLRDVGRVLQMPYGQVDRLCKLVPANPANPVTLGQ 477

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            AI D+ R REA   +  V+RLL ++QKLEGLYRHASTHAAG+VIGDRPL QLVP+YRD R
Sbjct: 478  AIEDEPRLREAAREEEIVERLLGMAQKLEGLYRHASTHAAGVVIGDRPLEQLVPLYRDPR 537

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
            SD+PV QFNMK +E AGL+KFDFLGLKTLT++  ++  + +RG+ VD++ +P DD ++Y 
Sbjct: 538  SDMPVAQFNMKMVEDAGLVKFDFLGLKTLTVIDTAVKLIERRGINVDVASLPIDDRKSYE 597

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LLT   T G+FQLES GMR+A+ GM+PD  EDIIALV+LYRPGP++NI VYN  K+G+++
Sbjct: 598  LLTRGETFGVFQLESQGMRRAVAGMKPDRFEDIIALVALYRPGPMENIPVYNAVKHGEQE 657

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
               +HPL++P+L ET G+I+YQEQVMQIAQ+LSGYSL EAD+LRRAMGKKI  EM+ Q+ 
Sbjct: 658  PDCLHPLLEPILMETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIAAEMEVQRA 717

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            RF+ GA + GI+KT A  IF+L+AKFA+YGFNKSHAAAYA++SY TAW+K ++ VEF+AA
Sbjct: 718  RFVDGAVERGINKTQAGTIFDLVAKFANYGFNKSHAAAYALVSYHTAWLKANHSVEFMAA 777

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
            SMTL+M N EK+  F Q+AR+  I+++PPS+N   V F V D +I Y++ A+KGVG    
Sbjct: 778  SMTLDMGNTEKLGDFRQEARRMGIEVVPPSINRSQVYFDVSDGKILYAMGAVKGVGEQAV 837

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
             HI+E     PF SL DF  R+  K LN+R LE+LV AGA D    +R ++ + LD I  
Sbjct: 838  EHIVEVRGQTPFQSLGDFARRISPKALNKRTLENLVAAGAFDELEPNRARVFEGLDRIIG 897

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
             AQ  E+N+T   + +F        + + L++     S  + + E   +GFY S HP+D 
Sbjct: 898  LAQRTEENKTLGQDELFGG--SDSEEPLQLDEVHGWTSEEKLQREHSAIGFYLSAHPIDE 955

Query: 971  YKPILRKMGIKGYEESVAT-IRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            Y  +L KM  + + +      +G +  RLA  V+S Q++KT+ G+R+G    S+   +YE
Sbjct: 956  YASVLEKMRAQPWAQFADAVKKGASAGRLAGTVISMQERKTKSGTRMGIARLSDATGQYE 1015

Query: 1029 ANFF 1032
            A  F
Sbjct: 1016 ALLF 1019


>gi|325281577|ref|YP_004254119.1| DNA polymerase III, alpha subunit [Odoribacter splanchnicus DSM
            20712]
 gi|324313386|gb|ADY33939.1| DNA polymerase III, alpha subunit [Odoribacter splanchnicus DSM
            20712]
          Length = 1254

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1104 (32%), Positives = 583/1104 (52%), Gaps = 94/1104 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F H  VHS YS+L+GA S+  +++K  AD Q A+A+TD  N+F    F       GI+PI
Sbjct: 3    FTHFHVHSQYSILDGAASIPGLIEKAKADGQTALALTDHGNMFGIKLFYDTCRQKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+  +     + + N+ K    +   +++L     GY  L++L S  +  D      R
Sbjct: 63   LGCEAYVA---RVSLYNKEKPIDRSGEHLIILAKNLTGYLNLVKLCSTAFC-DGFYYRPR 118

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I  + L++   EGLI+ +    G ID+       + AEK  L +K LFG+  Y+ + RH 
Sbjct: 119  IDKTQLEK-HHEGLIISSACLGGEIDQKIMAGDLEGAEKAALWYKNLFGEDYYLEVMRHP 177

Query: 191  GYDRYRESQV-----------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              D  + +++           +++A    + L+ATN+  FL+EED EAHD+L+ +     
Sbjct: 178  AADPKQRAEIYDNQQRCIQEKIKIARKLNIKLIATNDVHFLNEEDAEAHDLLICLNTRKD 237

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +    R R T   + K   EM+ +F DLPEA+ENT EI  +         P++P F    
Sbjct: 238  IDDPTRMRYTRQEWFKTTQEMIDLFPDLPEAIENTQEITDKVEEYELDSDPLMPVFPIPP 297

Query: 300  CDDIQKE-----------------------------------------------EENELR 312
                ++E                                               E + L+
Sbjct: 298  ELGTEEEYRQKFSQEDLFNEFTRDEKGNVVLTEEEANKKIKKLGGYDRLYRIKLEADYLK 357

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
               + G+  R  +        + +  +R+ FEL+++  M F GYFLIV DFI+ A+   +
Sbjct: 358  ELTMKGVVKRYGEN------PSPEIMERIIFELHIMKTMGFPGYFLIVQDFIRAARDMGV 411

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             VGPGRGS AGS  AY L IT+IDP+++ LLFERFLNPDR+S+PD D+DF    R +V+ 
Sbjct: 412  IVGPGRGSAAGSAVAYCLGITNIDPIKYDLLFERFLNPDRISLPDIDVDFDDAGRQQVLE 471

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            +V  KYG ++V+ I+TFGS+ AK A++DV R L++  S+ +RL K++P  P   +     
Sbjct: 472  WVTEKYGADKVSHIVTFGSMAAKMAIKDVARVLKLELSEANRLAKMVPEAPKMTLKKAYK 531

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
             +    +E +  +P + + ++ ++ LEG  R    HA GI+I   PL+  +P+       
Sbjct: 532  ENPDLEKEKQSLNPLISKTIQFAETLEGSIRQTGVHACGILISRDPLTDHIPIMPTEGES 591

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHL 611
            L  TQ++  ++E  GLIK DFLGL+TL++++  LD + + + + ++ + IP DD ET+ L
Sbjct: 592  LMTTQYDGHFVEPIGLIKMDFLGLRTLSIIKTCLDNIKKSKHIVLNENEIPLDDEETFKL 651

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
             T   T G+FQ ES GM++ L  +QP+  ED++A+ +LYRPGP++ I  +  RK+G+E I
Sbjct: 652  FTRGDTTGLFQFESPGMKKHLRALQPNRFEDLVAMNALYRPGPMEYIPSFIRRKHGEEPI 711

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
               HP+++P LK+T G+ +YQEQVM  ++ L  ++  ++D LR+AMGKK  E + + K +
Sbjct: 712  EYDHPMMEPYLKDTYGITVYQEQVMLQSRALGLFTRGQSDTLRKAMGKKKFELLAELKGK 771

Query: 732  FISGASKN-----------GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            F+ G   N              + +   I+     FA Y FNKSH+  YA I+YQT ++K
Sbjct: 772  FVEGCKNNPDFVQGAKEKGKDVEELVNKIWGDWEAFASYAFNKSHSVCYAYIAYQTGFLK 831

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSL 839
             HYP EF+AA+++  + ++ K+  F  + ++  + ++ P VN    DF V    +I + +
Sbjct: 832  AHYPAEFMAANLSNNLSDITKVTVFMDECKRMGLSVLAPDVNESYNDFTVNSHGQIRFGM 891

Query: 840  AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            AAIKGVG      I+E    + P+  + DF  R+D K +N++ +E+LV AG LD FGY R
Sbjct: 892  AAIKGVGEAAVEKIIEEREKNGPYKDVYDFFERIDYKSVNKKTIENLVTAGGLDSFGYHR 951

Query: 899  MQLLQ-------SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
             Q L         LDN+  Y Q  +++  N    +F    G    K  +      +   +
Sbjct: 952  AQYLHLVDATTTVLDNLVNYGQKNQQDSMNLQATLFGELDGFEVTKPNIPDCEPWHDYEK 1011

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIRLAAMVVSKQQKK 1008
             + E+ ++G Y + HPLD YK  ++ +     EE    + T +G  I +A ++ +K++ K
Sbjct: 1012 SKKEKELIGIYLTSHPLDPYKLEMQLL-CTPVEELNSGLETFKGKEINIAGIITAKREGK 1070

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T+ G   G +T  + +  YE  FF
Sbjct: 1071 TKTGKDFGILTLEDFSGTYELAFF 1094


>gi|325108084|ref|YP_004269152.1| DNA polymerase III subunit alpha [Planctomyces brasiliensis DSM 5305]
 gi|324968352|gb|ADY59130.1| DNA polymerase III, alpha subunit [Planctomyces brasiliensis DSM
            5305]
          Length = 1172

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1044 (35%), Positives = 565/1044 (54%), Gaps = 35/1044 (3%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
               P F HL  HS YSLL+GA  +  +++K       ++AITD  NLF ALEF +K    
Sbjct: 8    PSQP-FAHLHCHSHYSLLDGANRIPAMIEKCKTHGMNSLAITDHGNLFGALEFYEKCRGG 66

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI PIIG +  I        +            + LL +   G++ L+++ S+ YL +  
Sbjct: 67   GINPIIGYEAYIAPGKRTDRSAS--RMKEASFHLTLLATNQVGFKNLVKMASKAYL-EGF 123

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                RI    L E   EG+I L+G +S  +      +  + AE+ L  ++K FGDRLY+ 
Sbjct: 124  YYKPRIDKDLL-EAHNEGIICLSGCASSELSHLLLTDQQEQAEQLLRWYEKTFGDRLYLE 182

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q       +    + ++LA     PLVATN++ +L++ D  AHD+L+ V   + V+  +
Sbjct: 183  IQDSGVQIQKDCMERTIELADRFGFPLVATNDAHYLNQGDAPAHDILLCVNTRSTVNDAN 242

Query: 245  RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R ++   + +L+   EM + F   P+A+  + EIA RC   L +     P F        
Sbjct: 243  RMQLDGCEFHLRTPEEMYNAFPHCPDAVARSQEIADRCDIELDLTTRHFPVFDPPPG--- 299

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             K +   LR+    GL+ R            Q Y  RLD EL VI +M +S YFLIV DF
Sbjct: 300  -KTDVQYLRDLCEEGLKWRYGDQPD------QVYYDRLDKELGVIEKMGYSSYFLIVWDF 352

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
             ++A+   IP    RGS  G++ AY L ++D+ P+++ LLFERFL+P R   PD DIDFC
Sbjct: 353  ARFARDKGIP-CTARGSACGAIVAYLLGLSDVCPIQYDLLFERFLDPSRSEAPDIDIDFC 411

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            +DRR  VI +V+ KYG   VAQI TFG+L+AK ALRDV RAL +P ++V+ + K+IP+  
Sbjct: 412  RDRRQWVIDFVKEKYGEASVAQIGTFGTLKAKNALRDVARALDVPLARVNEVAKMIPDTL 471

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +   A+      +E    D  +  +++ +  LEGL R+  THAAG+VIGD+PL + V
Sbjct: 472  NIKLK-DAVDSTPELKEQYDQDRQIREVIDFAMALEGLARNVGTHAAGVVIGDQPLDEYV 530

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--VKVDLSLI 601
            P+ R       +TQ+    +EKAGL+K DFLGL+ L++L K++  + +      +     
Sbjct: 531  PLQRITGKTDIITQW--TDVEKAGLLKMDFLGLRNLSILDKAVKNVRENNPDFNMRPIDF 588

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIV 659
            P DD ET+ LL    T GIFQLES GMR  L  M+PD   DIIA  +LYRPGP++   ++
Sbjct: 589  PLDDKETFALLQRGETKGIFQLESGGMRDLLTKMKPDKFADIIATSALYRPGPLEGGMVM 648

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y   K+G++ + ++HP++D +L ET GV++YQEQVM+I   + G  LS A    +A+ K
Sbjct: 649  TYVEVKHGRQPVPTVHPIVDEVLAETYGVMVYQEQVMRILNRVGGIELSSAYRCIKAISK 708

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  E +    E F+ G+ KN + K +A  ++EL+ KFA YGFNKSH+ AY  I+YQTA++
Sbjct: 709  KKLEMIAAFHEEFLEGSQKNDMDKKVAQELWELIEKFAGYGFNKSHSTAYGAIAYQTAYL 768

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYP EF+AA ++  M++ E+I +   D R+  I I+PP +NT  VDF+V    I + +
Sbjct: 769  KAHYPKEFMAALLSCGMESSERIAEHIDDCRRMKITILPPDINTSEVDFRVAGENIAFGM 828

Query: 840  AAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             AIKGVG +  + +++   A+ P+ S+ D C RVD K + +  LE+L+ AGALD FG +R
Sbjct: 829  GAIKGVGESAVQAVVDEREANGPYKSIFDLCERVDPKAMTKGNLETLIKAGALDSFGPNR 888

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKFSVENSSVRFEN 954
             Q   +++   + A    K++     ++F      ++       T+ +      S +   
Sbjct: 889  EQHTLAVEMAVQMAARKHKDKLRGQRSLFGGGGGGDETVEELAATVPEAPDWTHSQKLNI 948

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK--- 1011
            E+ V GFY + HPL  +   +  +     +E         + L  M+ + ++  T+    
Sbjct: 949  EKEVFGFYLTSHPLTEFADQITPLCSHTTKELAEAEDQIEVILGGMISAIKKATTKNPSR 1008

Query: 1012 --GSRIGWVTFSEPAKEYEANFFP 1033
               S+     F +P        +P
Sbjct: 1009 NGNSKYVNFDFEDPQGVVRCILWP 1032


>gi|119384499|ref|YP_915555.1| DNA polymerase III subunit alpha [Paracoccus denitrificans PD1222]
 gi|119374266|gb|ABL69859.1| DNA polymerase III, alpha subunit [Paracoccus denitrificans PD1222]
          Length = 1156

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 487/1058 (46%), Positives = 666/1058 (62%), Gaps = 59/1058 (5%)

Query: 5    LE-KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +   SP F+HL+ HS +SLLEGA+ +  + D  A +  PA+A+TD+N LF+ALEFS KA 
Sbjct: 1    MPENSPRFIHLRTHSEHSLLEGAVPVKKLADLAAQNGMPAVALTDSNALFAALEFSVKAQ 60

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AG+QPIIGCQ+ +  +                  +VLL     G+  L+EL + +YL D
Sbjct: 61   DAGVQPIIGCQVTLAAE--------------ATGPVVLLAQNEAGWLNLMELSTCLYLRD 106

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                   +    L     EGLI LTGG+ GP+ +         A          F  RLY
Sbjct: 107  D-HALPHVTPEELAA-HAEGLICLTGGAGGPLGQLVLQGRQAEARALAERLAAAFPTRLY 164

Query: 184  VNLQRHRGYDRYRESQ-------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            V LQRH   +     +       ++ +AY  +LPLVATN+  F   E ++AHD L+ ++ 
Sbjct: 165  VELQRHHDAEGQPVPEETGSEGGMIDIAYALDLPLVATNDVYFPKPELFDAHDALICISE 224

Query: 237  STV-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                     R R+TP HY K+ +EM ++F+DLPEA+ NTVEIARRC+F          + 
Sbjct: 225  RAYVDQTAPRRRLTPQHYFKSAAEMATLFADLPEAIRNTVEIARRCAF--------AVKK 276

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
             +        +E  ELR +A  GL  RLA   I      ++Y +RL FEL +I +M F G
Sbjct: 277  HKPILPRFADDEVEELRRQAWDGLRARLA--VIPHSATVEEYEERLRFELGIIEQMGFPG 334

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI+WAK++NIPVGPGRGSGAGS+ AYALTITD+DP+R+SLLFERFLNP+R+SM
Sbjct: 335  YFLIVADFIKWAKEHNIPVGPGRGSGAGSLVAYALTITDLDPIRYSLLFERFLNPERVSM 394

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RDVGR LQ+P+ QVDRL
Sbjct: 395  PDFDIDFCMDRREEVIQYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQLPFGQVDRL 454

Query: 476  CKLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             K+IP +   PVS+   +AD+ R REA      V+RLL+ + K+EGL R+ASTHAAG+VI
Sbjct: 455  SKMIPVEGVKPVSVTKALADEPRLREAARE-EVVNRLLDYAAKIEGLLRNASTHAAGVVI 513

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ--- 591
            GDRPL +LVP+YRD  SD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D +     
Sbjct: 514  GDRPLHRLVPLYRDPASDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLINDGGR 573

Query: 592  ---------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
                           +G +  ++ IP DD  +Y L  +  T+ +FQ+ESSGM  AL  M+
Sbjct: 574  PLHVAADGRQLYEPAKGAENQINAIPLDDKPSYDLFASARTVAVFQVESSGMMDALRRMK 633

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            P CIEDI+ALV+LYRPGP++NI  Y   KNG   + SIHP ID +L ETQG+I+YQEQVM
Sbjct: 634  PTCIEDIVALVALYRPGPMENIPTYCEVKNGLRPLESIHPSIDDILAETQGIIVYQEQVM 693

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            QIAQ+++GYSL  AD+LRRAMGKKI EEM K++ +F+ G    GI    A  +F+LL KF
Sbjct: 694  QIAQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFVEGCKAQGIDTKKAGEVFDLLEKF 753

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+AA M  ++   +K+  + ++A +  I+ 
Sbjct: 754  ANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKREADRMGIET 813

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            +PP VN     F V D +I Y+L A+KGVG      I++A A +PF  + DF  RVD ++
Sbjct: 814  VPPCVNRSEALFSVKDGKILYALGALKGVGVEAMNLIVQARAGRPFADMHDFARRVDMRR 873

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            + +R LE L  AGA D    +R ++L+SLD +  ++  V++   +   ++F   +     
Sbjct: 874  VGKRPLEMLARAGAFDALEPNRARVLKSLDGLVAWSTAVQEAAASSQSSLFGGGEDLPPP 933

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNI 995
            +       V   + +   E   +GFY SGHPLD Y+P LR+ G++   E   A   G  +
Sbjct: 934  RPV--AAPVWMPAEKLAEEHAAVGFYLSGHPLDDYQPALRRKGVQTLAEVTQAAADGALV 991

Query: 996  -RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +LA  V  +Q+KK+ +G+R  +V  S+P   YE   F
Sbjct: 992  AQLAGTVAHRQEKKSARGTRFAFVGLSDPTGLYEVTVF 1029


>gi|312880004|ref|ZP_07739804.1| DNA polymerase III, alpha subunit [Aminomonas paucivorans DSM 12260]
 gi|310783295|gb|EFQ23693.1| DNA polymerase III, alpha subunit [Aminomonas paucivorans DSM 12260]
          Length = 1136

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/1039 (37%), Positives = 579/1039 (55%), Gaps = 34/1039 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   F+HL VHS YSLL+GA+    +++  ++    A+A+TD   ++   EF +K+  
Sbjct: 1    MSEP--FIHLHVHSEYSLLDGAIRCTELVETASSMGMNAVALTDHGVMYGCEEFFEKSEK 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI GC++ +D         +GK        +VL      GY+ L++LVS     + 
Sbjct: 59   AGIKPIFGCEVYVDPSGIDNREGKGKN-----HHLVLWAENETGYRNLVKLVSLANT-EG 112

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLY 183
                 RI    L     EGLI  +   +G I         + A  R   ++ + G+ R Y
Sbjct: 113  FYYKPRIDHHLLAR-HAEGLIGSSACLAGEIPSLILSGDYEAARDRAFLYRDILGEGRFY 171

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +  +   ++     ++V+LA + + PLVATN++ +L   D   HDVL+ V   + V  
Sbjct: 172  LEVMHNALREQALANRELVRLARSEDFPLVATNDAHYLRRSDASWHDVLLCVQTQSTVQT 231

Query: 243  KDRPRVTPDHYLK--NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             DR R   D +             ++LP+AL NT EIA RC+  L +   +LP F   E 
Sbjct: 232  TDRYRFGADDFYFRSPEEMWSLFGAELPDALRNTQEIADRCNVKLTLGKYLLPEFPIPEG 291

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  E  L  +A  GL  R     +      + Y +RL +EL VI +M F GYF IV
Sbjct: 292  ----QTLETFLEKRAWEGLARR-----LGTQEIPEAYGERLRYELGVIRQMGFPGYFCIV 342

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            AD I  AK   IPVGPGRGS AGS+ A+AL IT++DPLR+ LLFERFLNP+R+SMPD D 
Sbjct: 343  ADIITAAKGQGIPVGPGRGSAAGSLVAWALGITELDPLRYHLLFERFLNPERISMPDIDT 402

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D    RRDEV+ Y+  KYG +RV+QIITF  +++KAA+RDVGRAL MPYS VDR+ KL+P
Sbjct: 403  DISDKRRDEVLAYIVQKYGADRVSQIITFDRMKSKAAIRDVGRALAMPYSDVDRVAKLVP 462

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                     +A+      ++    D  V +L+E +  +EG+ RH S HAAG+VI   PL 
Sbjct: 463  E--GVKTLGEALEKAPDLKQLSDQDLQVRQLIETASHIEGIARHCSQHAAGVVITPVPLV 520

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLS 599
            ++VP+ R    +  VTQ++M+ IE  GL+K DFLGL+TL++L+ +L  + A     +DLS
Sbjct: 521  EMVPVRRIG-ENQVVTQYSMEPIEHLGLVKMDFLGLRTLSVLEDTLSNIVANHKPPLDLS 579

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD ET+ +L    TLG+FQLESSGM+  L  ++PDC ED+IA+++LYRPGP+ + +
Sbjct: 580  AIPMDDPETFDMLQRADTLGVFQLESSGMQDLLRRLRPDCFEDLIAVLALYRPGPLGSGM 639

Query: 660  --VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
               Y  RK+G+      HP ++  LKET GVI+YQEQVMQ A  L+GYSL EAD+LRRAM
Sbjct: 640  VEDYIERKHGRAVTQYPHPCLEKALKETYGVILYQEQVMQCAAELAGYSLGEADLLRRAM 699

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  + M+KQ+ +F+ GA + G+    A  IF+ + KFA+YGFNKSH+AAYA+ISYQTA
Sbjct: 700  GKKKADVMEKQRSKFVDGARERGVDPVKAEEIFDSIEKFAEYGFNKSHSAAYALISYQTA 759

Query: 778  WMKTHYPVEF-LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            ++K HY  EF  A   ++    ++ + ++ +  R     ++PP VN     F      I 
Sbjct: 760  YLKAHYGAEFLAAYLSSMVGARMDILGRYIRGVRDLGFPVLPPDVNESKAAFAAVGKVIR 819

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            + L+ +  VG      I++A     PF S  DF  RVD + +NR V+E+L+ AGA D   
Sbjct: 820  FGLSGVGKVGEAAVDSILKARSEGGPFASFWDFLIRVDLRAVNRGVVENLIKAGAFDALW 879

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R QLL++L  + +  Q  ++       ++F  E+    D   +E         + + E
Sbjct: 880  PNRRQLLENLPTLLEMGQ--KRAERGNQTSLF-LEEQEADDVPPMEPCEDFEVRQKLDFE 936

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-TIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +  LG Y SGHP +  +  +R        E      R     +  ++V  +++ T++G  
Sbjct: 937  KEALGLYISGHPFEQIEGRVRPYTTCSLAEVEHWQSRDTPPVVGGLLVGVKERYTKRGDP 996

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            +G + F +   + E   FP
Sbjct: 997  MGILEFEDTETKLETVCFP 1015


>gi|294792867|ref|ZP_06758014.1| DNA polymerase III, alpha subunit [Veillonella sp. 6_1_27]
 gi|294456766|gb|EFG25129.1| DNA polymerase III, alpha subunit [Veillonella sp. 6_1_27]
          Length = 1135

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1031 (35%), Positives = 598/1031 (58%), Gaps = 27/1031 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ +SLL+G   L +++ +     QPA+AITD  N+++A+ F ++  A G++PI
Sbjct: 4    FVHLHSHTEFSLLDGISRLPDMVRRAKELNQPALAITDHGNMYAAIYFYKECMAQGVKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +   +              +  ++LL  T EGY+ L+++VS+           R
Sbjct: 64   IGCEVYVTENNRFDRPE--GRSRERLKHLILLAETMEGYRNLVKIVSKASTEGMLY-RPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 L++  ++G+I L+    G I +    ++ + A++ +  + + +G D  ++ +Q H
Sbjct: 121  ADRDLLRQY-SKGIIALSACIQGEIPQYILQDNMEGAKRSIEWYIETYGKDNFFLEIQNH 179

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +  + + ++++L+  + L +VA+N+  ++ +ED +A D+ + ++     ++ DR + 
Sbjct: 180  GLPEEAKAQEELIKLSKEYGLGIVASNDFHYVLKEDADAQDIKVCISTGRRRAEVDRLKF 239

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + YLK+  EM  +F  +P A+ENT++IA RC+         LP F   E +      
Sbjct: 240  PNDEFYLKSGDEMAELFGHIPGAIENTLKIAERCNVEFNFDEHHLPHFDVPEGE----TS 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR            +     G  +++ ++RLD+EL+VI  M F  YFLIV D++++A
Sbjct: 296  KTYLRKVCER-------EIPRLYGETSEELQKRLDYELDVIGTMGFEDYFLIVWDYVRYA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++++I VGPGRGS AGSV AY L IT +DPL++ LLFERFLNP+R+SMPD DIDFC ++R
Sbjct: 349  REHDILVGPGRGSAAGSVVAYLLGITGLDPLKYDLLFERFLNPERVSMPDIDIDFCYEKR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             + I YV  KYG  RV+QIITFG+  A+A +RDVGR L +P ++V+R+ K+IPN+    +
Sbjct: 409  GQAIEYVTRKYGQARVSQIITFGTEAARAVIRDVGRVLDLPLAEVNRIAKMIPNELGITL 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                       +    +D +V  L +  +KLEG+ R++STHAAG+VI   PL   VP+  
Sbjct: 469  DKAL--QGKDLKALYESDSNVKELFDFGKKLEGIARNSSTHAAGVVISADPLDDHVPVQN 526

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
                   VTQ++   IE+ GL+K DFLGL+TLT++  +L  +   RG+ +DL  IP DD 
Sbjct: 527  ANDEGF-VTQYDKDNIEELGLLKMDFLGLRTLTVMGDALKLIKANRGIDLDLDAIPLDDA 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664
                +LT   T G+FQLES G+ + +  ++P+  ED+I LV+LYRPGP+ + +   + +R
Sbjct: 586  AACDILTKGDTSGVFQLESEGITKLVMDLKPEHFEDLIPLVALYRPGPLGSGMVADFIDR 645

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++GK+++  +HP+++P+LK+T GVI+YQEQVMQIA  + G+SL +AD++RRAMGKK +  
Sbjct: 646  RHGKKEVTYLHPILEPILKDTFGVILYQEQVMQIASAMGGFSLGQADLMRRAMGKKKESV 705

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +  Q+E FI G+  NGI +++A  +F+LL  FA YGFNKSH+AAYA I+YQTA++K HY 
Sbjct: 706  LKAQRESFIQGSINNGIEESVANEVFDLLVYFAGYGFNKSHSAAYAYIAYQTAYLKAHYF 765

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EF+AA+MT  M N++K+  +    ++ N++++ P +N     F V D+ I + L  IK 
Sbjct: 766  PEFMAATMTSFMQNMQKLTYYINACKKHNVKVLGPDINYSERSFAVQDDSIRFGLGGIKN 825

Query: 845  VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG      ++        +  + DFC RVD++ +N+R+LESL+  GA+D F  +R QLL 
Sbjct: 826  VGDNAIDRLIRERNEHGLYTDIVDFCKRVDNRVVNKRLLESLIRCGAMDGFQENRNQLLH 885

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
              ++ Q      +K+      N+F   +    D I +      +   + ++E+   GFY 
Sbjct: 886  MYESAQAVGAKEQKDAAMGTMNLFGDMEEAV-DFIPVPTVEDLSEDDKLKDEKEYTGFYI 944

Query: 964  SGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            +GHPL  Y   L  +  +    E+     G  I    ++ +K  + T++   +  +   +
Sbjct: 945  TGHPLQGYAKELEGLFELGALVENPEQYDGQTITFGGLIENKSDRMTKRNELMSILRIED 1004

Query: 1023 PAKEYEANFFP 1033
             +       FP
Sbjct: 1005 YSGAANVVAFP 1015


>gi|124025641|ref|YP_001014757.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str.
            NATL1A]
 gi|123960709|gb|ABM75492.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str.
            NATL1A]
          Length = 1172

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1050 (35%), Positives = 585/1050 (55%), Gaps = 34/1050 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV +  HS YSLL+GA  L  ++ +      PA+A+TD   ++ A+E  +   AA I+P
Sbjct: 2    AFVPIHNHSDYSLLDGASQLPLMVQRAKELGMPALALTDHGVMYGAIELLKLCKAANIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          +          +V++     GY+ L++L +  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPQPK----KEKRYHLVVVAKNQIGYENLVKLTTLSHLNGVRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   +L +  +EGLI  T    G I +A       VA +    +K++ GD  Y+ 
Sbjct: 118  FSRPCIDK-YLFKKYSEGLICSTACLGGEIPQAILKGRIDVAREVAAWYKEVLGDDFYLE 176

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR   S++V+++   ++ ++ATN++ +LS+ D EAHD L+ V    ++S   
Sbjct: 177  IQDHGSIEDRIVNSEIVKISEELDIKIIATNDAHYLSKNDIEAHDALICVLTGKLISDHK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R R T   Y+K+  EM S+F+D      + + +E   + S  ++ +  +    +      
Sbjct: 237  RLRYTGTEYIKSEDEMRSLFTDHLDKNVINSAIENTVKLSNKVEEYKILGTYKMPNFPIP 296

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
               +    L+   + GL   L             Y++RLD+EL VI +M F  YFL+V D
Sbjct: 297  DGYQPIEYLKEITIKGLLEIL--DISKFENLPITYKERLDYELKVIEQMGFPTYFLVVWD 354

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I++A++ NIPVGPGRGS AGS+ A++L IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 355  YIRFAREQNIPVGPGRGSAAGSLVAFSLHITNIDPVENGLLFERFLNPERKSMPDIDTDF 414

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV  KYG ++VAQIITF  + +KA L+DV R L +PY   DRL KLIP  
Sbjct: 415  CIERRGEVIDYVTKKYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 474

Query: 483  PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
               P  L A+    + +  F E    D  V + ++++ ++EG  +    HAAG+VI    
Sbjct: 475  RGKPAKLAAMISKESPNKDFYEKYNNDSKVKKWVDMAMRIEGTNKTFGVHAAGVVIAANS 534

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-D 597
            L  LVP+ R+      +TQ+ M+ IE  GL+K DFLGL+ LT+++K++D + +   K  D
Sbjct: 535  LDNLVPLQRN-NDGQIITQYFMEDIESLGLLKMDFLGLRNLTMIEKTIDLVEKSIGKRLD 593

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               +PF D +T+ LL+     GIFQLESSGMRQ ++ ++P  +EDI ++++LYRPGP+D 
Sbjct: 594  PDSLPFTDEKTFELLSRGDLEGIFQLESSGMRQIVKDLKPSSLEDISSILALYRPGPLDA 653

Query: 658  --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  + NRK+GKE I   H  ++P+L ET G+++YQEQ+M+IAQ L+GY+L +AD+LRR
Sbjct: 654  GLIPKFINRKHGKESIDFQHQSLEPILSETYGIMVYQEQIMKIAQDLAGYTLGQADLLRR 713

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK   EM + +  F+ GA KNG++  IA  +F+ +  FA+Y FNKSH+ AY  ++YQ
Sbjct: 714  AMGKKKVSEMQRHRTLFVDGAVKNGVTDVIAEQLFDQMVLFAEYCFNKSHSTAYGAVTYQ 773

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYPV ++AA +T+   + +KI+++  +     I +MPP++NT  VDF   DN I
Sbjct: 774  TAYLKAHYPVAYMAALLTVNAGSADKIQRYISNCNSMGINVMPPNINTSGVDFTPKDNSI 833

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             +  +A+K +G    R I+ +   D  F SL  FC R+    +NRR LE+L+ +GALDC 
Sbjct: 834  LFGFSAVKNLGDGAIRKIITSRDEDGQFTSLAQFCDRISLGSVNRRGLEALIHSGALDCL 893

Query: 895  GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---------KITLEKF 943
                +R QL+  LD   ++A    K+RT+   N+F     T ++             ++ 
Sbjct: 894  EKNANRAQLIADLDLTIEWASSRAKDRTSGQGNLFDLSNSTNNESSPNDDYSSAPKAKEV 953

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                 S + + E+  +GFY S HPL       + +              + + + AM+  
Sbjct: 954  QEYLPSDKLKLEKEHVGFYLSDHPLKQLSEPAKLIAPISLSSLEEQKDKSKVSVIAMIPE 1013

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++  TRKG R+  +   +     EA  FP
Sbjct: 1014 MREVTTRKGDRMAIIQLEDLTGSCEAVVFP 1043


>gi|317407652|gb|EFV87591.1| DNA polymerase III [Achromobacter xylosoxidans C54]
          Length = 1163

 Score =  752 bits (1941), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1055 (37%), Positives = 609/1055 (57%), Gaps = 45/1055 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +++ +     FVHL+VHS +S+++G + + +++ ++A   QPA+A+TD +NLF  ++F +
Sbjct: 1    MSEAVTTPSPFVHLRVHSEFSVVDGIVRIPDLIKRVAKLGQPAVALTDLSNLFGLIKFYK 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  AGI+PI GC + +   D+                ++LLV   +GY  L EL+SR +
Sbjct: 61   GARGAGIKPIAGCDVWLSNDDDPAKP----------FRVLLLVRNHQGYLNLCELLSRAF 110

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            L +QGK    I   WLQ  G +GLI+L+GG  G + +A    ++  A      +  +F  
Sbjct: 111  LTNQGKGRAEIRREWLQ--GQDGLIVLSGGRGGDVGQALDAGNAVSALALARQWAHMFPG 168

Query: 181  RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQR     D       ++LA    LP+VAT+   FL E +++AH+  + +A   +
Sbjct: 169  SYYIELQRAGMDGDEAYTQAAMRLAAEAGLPVVATHPVQFLDEYEFQAHEARVCIAEGEI 228

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R  R + + YL +  EM   F+D+P AL NTVEIA+RC+  L +  P LP F   
Sbjct: 229  LANPRRVRRFSKEQYLLSSEEMARRFADVPSALANTVEIAKRCNLSLVLGKPRLPNFPTP 288

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +   +    ++ L   +  GLE R+A        +    + Y +RL +E   I +M F G
Sbjct: 289  DGVSL----DDYLVQLSEEGLEKRMAFLFPDEAERASKREQYYERLRWECKTIIQMGFPG 344

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLNP+R+SM
Sbjct: 345  YFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSM 404

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQD R+ VI YV+ KYG   V+QI TFG+L AKA +RD GR L MPY   D L
Sbjct: 405  PDFDIDFCQDNRERVIDYVKEKYGRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGL 464

Query: 476  CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP +P  P +  + + D+  F++    +  V  L+++++ LEGL R+   HA G++I
Sbjct: 465  SKLIPFNPMDPWTLERTLKDEPAFKDRYEQEEEVRALVDLAKPLEGLTRNIGMHAGGVLI 524

Query: 535  GDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-- 591
                L+   P+Y    + +  V+QF+   +E AGL+KFDFLGL+ LT+L  ++ ++ Q  
Sbjct: 525  APGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFN 584

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  D+  +  DD   Y +L    T  +FQLES GM++ L+ ++P+  EDIIA+++LY
Sbjct: 585  EDKRDFDVMALSLDDPAAYKILCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALY 644

Query: 651  RPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+++ +   + NRK+G+  +   H  ++  LK T GVI+YQEQVM I+Q++ GYSL 
Sbjct: 645  RPGPLESGMVDDFVNRKHGRAAVDYFHNDLESTLKSTYGVIVYQEQVMLISQIIGGYSLG 704

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM K +E F  GA + G    +AV +F+L+ KFA YGFNKSH+AA
Sbjct: 705  GADLLRRAMGKKKPEEMAKHRELFEKGAKEKGHDPDLAVKLFDLMEKFAGYGFNKSHSAA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+ISYQTAW+K ++P EFLAA+M+ +MD+ +K++ FC+DA+   ++++PP VN     F
Sbjct: 765  YALISYQTAWLKAYHPTEFLAATMSSDMDDTDKVQIFCRDAQDNGVEVLPPDVNFSGYRF 824

Query: 829  KVGDNR----------IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKL 877
            +   ++          + Y L A+KG G      I+ A  +  PF +L DFC RV    +
Sbjct: 825  EPVADKHTEKGKPPRTMRYGLGAVKGTGQGAVEDILRARKEGGPFQNLFDFCRRVSKHAV 884

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NRR +E+L+ AGA D    +R  +L S+    + A+  +  R+    ++F  +       
Sbjct: 885  NRRTIEALIKAGAFDTIEPNRAAMLASVPTAMEAAE--QAARSANQSSLFGDDSSDVVAG 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
              L K +  +   +   E+  LG+Y+SGH  D ++  +R++                  +
Sbjct: 943  -ELAKVAPWDLHKKLTEEKSALGYYYSGHLFDAWRDEVRQIVPMQLARVEPQRDLQ--WM 999

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++ S +   TR+G  + +    +   + E + F
Sbjct: 1000 CGVLASVRVMMTRRGK-MVFAVLDDGTAQVEISVF 1033


>gi|311105199|ref|YP_003978052.1| DNA polymerase III subunit alpha 1 [Achromobacter xylosoxidans A8]
 gi|310759888|gb|ADP15337.1| DNA polymerase III, alpha subunit 1 [Achromobacter xylosoxidans A8]
          Length = 1164

 Score =  752 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/1053 (38%), Positives = 609/1053 (57%), Gaps = 45/1053 (4%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            + +   P FVHL+VHS +S+++G + + +++ ++A   QPA+A+TD +NLF  ++F + A
Sbjct: 4    EAVTTPPPFVHLRVHSEFSVVDGLVRIPDLIKRVAKLGQPAVALTDLSNLFGLIKFYKGA 63

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              AGI+PI GC + +   D+                ++LLV   +GY  L EL+S+ +L 
Sbjct: 64   RGAGIKPIAGCDVWLSNDDDPAKP----------FRLLLLVRNHQGYLNLCELLSKAFLT 113

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +QGK    I   WLQ  G EGLI L+GG  G + +A    ++  A      +  LF    
Sbjct: 114  NQGKGRAEIRREWLQ--GQEGLIALSGGRGGDVGQALDAGNAVSALALARQWAHLFPGSY 171

Query: 183  YVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ LQR     D       ++LA    LP+VAT+   FL E +++AH+  + +A   +++
Sbjct: 172  YIELQRAGMDGDEAYTQAALRLASEAGLPVVATHPVQFLDEFEFQAHEARVCIAEGEILA 231

Query: 242  QKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               R  R + + YL +  EM   F+D+P AL NTVEIA+RC+  L +  P LP F   E 
Sbjct: 232  NPRRVRRFSKEQYLLSSEEMARRFADVPSALANTVEIAKRCNLSLVLGKPRLPNFPTPEG 291

Query: 301  DDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
              +    ++ L   +  GLE R+      A  +    + Y +RL +E   I +M F GYF
Sbjct: 292  VGL----DDYLVQLSEEGLEKRMEFLFPDAAERESKREQYYERLRWECKTIIQMGFPGYF 347

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLNP+R+SMPD
Sbjct: 348  LIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSMPD 407

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQD R+ VI YV+ KYG   V+QI TFG+L AKA +RD GR L MPY   D L K
Sbjct: 408  FDIDFCQDNRERVIDYVKEKYGRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGLSK 467

Query: 478  LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +P  P +  + + D+  F++    +  V  L+++++ LEGL R+   HA G++I  
Sbjct: 468  LIPFNPMDPWTLERTLKDEPAFKDRYEQEEEVRALVDLAKPLEGLTRNIGMHAGGVLIAP 527

Query: 537  RPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---R 592
              L+   P+Y    + +  V+QF+   +E AGL+KFDFLGL+ LT+L  ++ ++ Q    
Sbjct: 528  GKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFNED 587

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                D+  +  DD   Y +L    T  +FQLES GM++ L+ ++P+  EDIIA+++LYRP
Sbjct: 588  KRDFDVMALALDDPAAYKILCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALYRP 647

Query: 653  GPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GP+++ +   + NRK+G+  +   H  ++  LK T GVI+YQEQVM I+Q++ GYSL  A
Sbjct: 648  GPLESGMVDDFVNRKHGRAAVDYFHNDLESTLKSTYGVIVYQEQVMLISQIIGGYSLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM K +E F  GA + G    +AV +F+L+ KFA YGFNKSH+AAYA
Sbjct: 708  DLLRRAMGKKKPEEMAKHRELFEQGAKEKGHDPDLAVKLFDLMEKFAGYGFNKSHSAAYA 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +ISYQTAW+K ++P EFLAA+M+ +MD+ +K++ FC+DA+   ++++PP VN     F+ 
Sbjct: 768  LISYQTAWLKAYHPTEFLAATMSSDMDDTDKVQIFCRDAQDNGVEVLPPDVNFSGYRFEP 827

Query: 831  GDNR----------IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNR 879
              ++          + Y L A+KG G      I+ A  +  PF +L DFC RV  + +NR
Sbjct: 828  VVDKHTKNGKPPRTMRYGLGAVKGTGQGAVEDILRARKEGGPFLNLFDFCRRVSKQAVNR 887

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            R +E+L+ AGA D    +R  +L S+    + A+  +  R+    ++F  + G       
Sbjct: 888  RTIEALIKAGAFDTIEPNRAAMLASVPTAMEAAE--QAARSANQASLFGDDSGDVVAG-E 944

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
            L K +  +   +   E+  LG+Y+SGH  D ++  +R++                  +  
Sbjct: 945  LAKVAPWDLHKKLTEEKSALGYYYSGHLFDAWRDEVRRIVPMQLVRVEPQRDLQ--WMCG 1002

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++ S +   TR+G  + +    +   + E + F
Sbjct: 1003 VLASVRVMMTRRGK-MVFAVLDDGTAQVEISVF 1034


>gi|163850481|ref|YP_001638524.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens PA1]
 gi|240137543|ref|YP_002962014.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1]
 gi|163662086|gb|ABY29453.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens PA1]
 gi|240007511|gb|ACS38737.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1]
          Length = 1173

 Score =  752 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 519/1050 (49%), Positives = 704/1050 (67%), Gaps = 33/1050 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHSSYSLLEG +   +++   AAD+QPA+A+TDTNNLF ALEFS+ A  AGIQPI
Sbjct: 10   FVHLHVHSSYSLLEGGVKAGDLVKAAAADRQPALALTDTNNLFGALEFSEYAAKAGIQPI 69

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G QL I  +         + P     +IVLL     GY  L+ L SR +       +  
Sbjct: 70   AGLQLTICFE---APDPMARLPQAGCANIVLLAQDETGYGNLLRLGSRAHFDGPLGAAPN 126

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
            + +S L E   EGLI LTGG SGP+D +        A +RL   K  FG+  LYV +QRH
Sbjct: 127  LAVSAL-EGNVEGLIGLTGGLSGPLDTSLRAGRVDQAARRLEILKGAFGEEHLYVEIQRH 185

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D    E ++++LA T+ L +VATN   F    DY+AHD L+A+A   +VS + R R+
Sbjct: 186  GLDDERAVERELLRLADTNGLGIVATNEPFFAKPGDYDAHDALLAIAEGRLVSDERRRRL 245

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF------IEKECDD 302
            TP H    R+ M+ +F DLP+AL  +VEIA RCS+  +   PILP F            D
Sbjct: 246  TPRHAFTTRAAMMELFRDLPDALSASVEIAMRCSYRARTRKPILPNFASVAAGEAPPMAD 305

Query: 303  IQKEEEN------------ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
               E               EL  +A AGLE+RL Q   A G+  +DYR RL FEL+VI +
Sbjct: 306  ALAEAAETPVQAVAADEPTELCRQAEAGLELRLKQHGTAPGFTEEDYRARLKFELDVIVK 365

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            MKF GYFLIV+DFI+WAK ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFERFLNP
Sbjct: 366  MKFPGYFLIVSDFIKWAKDHDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFERFLNP 425

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFDIDFC + R+ VIRYVQ +YG  +V QIITFG+L A+  LRDVGR L+MPY 
Sbjct: 426  ERVSMPDFDIDFCVEGRERVIRYVQQRYGERQVGQIITFGTLLARGVLRDVGRVLEMPYG 485

Query: 471  QVDRLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            QVD+L KL+P +PA+PV+  QAI  + + ++A   +P V RL+EIS+KLEGL+RHASTHA
Sbjct: 486  QVDKLTKLVPQNPANPVTLAQAIEGEPKLQQAIEEEPIVARLIEISKKLEGLHRHASTHA 545

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            AG+VIGDRPL +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+   D L
Sbjct: 546  AGVVIGDRPLEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRCCTDLL 605

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
             QRG++VDL+ IP DD +TY  +    T+ +FQ+ES+GMR+AL  MQ D +EDIIALV+L
Sbjct: 606  KQRGIEVDLAQIPLDDKKTYEPMGRGETVAVFQVESAGMRKALCEMQADRLEDIIALVAL 665

Query: 650  YRPGPIDNIVVYNNRKNGKEK----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            YRPGP+ NI VY  RK G++         HP+++P+LKET G+I+YQEQVM++A++L+GY
Sbjct: 666  YRPGPMANIPVYCERKLGRDAGNEASWYSHPMLEPILKETFGIIVYQEQVMEVAKVLAGY 725

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L EAD+LRRAMGKKIK EMD Q++RF+ G ++NG++K  A  IF+LLAKFADYGFNKSH
Sbjct: 726  TLGEADMLRRAMGKKIKAEMDAQRDRFVKGCTENGLTKAKADEIFDLLAKFADYGFNKSH 785

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            AAAYA+++YQTA++K ++PVEFLAA+MTL++DN +K+ +F QDA++  I + PPSVNT  
Sbjct: 786  AAAYALVTYQTAYLKANHPVEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPSVNTSG 845

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            V F V + RI Y+LAAIKGVG +    I+ A  DKPF  L  F  R++ + +N+R LE+L
Sbjct: 846  VVFDVREGRILYALAAIKGVGRSAVESIVAARGDKPFKDLACFARRLNPRHVNKRTLENL 905

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            + AGALDC    R +   +++ + K AQ   +  T+   ++F     +    + +     
Sbjct: 906  IAAGALDCIEPDRARAWAAVEPMMKMAQGAAEAETSGITDMFGGV-ASVDVALRIPPHEF 964

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI---RLAAMVV 1002
               + + + E   +GF+ SGHPLD Y PIL K+ ++ + +    +R       R+AA V+
Sbjct: 965  WTHTDKLKRECDAIGFFLSGHPLDEYGPILEKLRVQSWADFCRAVRAGTASVGRIAASVL 1024

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + +++T+ G+++G V  S+    +EA  F
Sbjct: 1025 DRSERRTKSGNKLGIVILSDQTGHFEAIIF 1054


>gi|88706741|ref|ZP_01104443.1| DNA polymerase III alpha subunit [Congregibacter litoralis KT71]
 gi|88699062|gb|EAQ96179.1| DNA polymerase III alpha subunit [Congregibacter litoralis KT71]
          Length = 1168

 Score =  752 bits (1940), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1046 (39%), Positives = 592/1046 (56%), Gaps = 42/1046 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              FVHL+VHS YSL +G + +  +  + A    PAIA+TD  N +  ++F + A  AGI+
Sbjct: 2    SDFVHLRVHSEYSLSDGLVRIKALAARTAELGMPAIAVTDVCNFYGLIKFHKAAVNAGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  + +                     + LLV  A GY  L  L+SR Y   Q  + 
Sbjct: 62   PIFGADVWVTES----------LKDDEAHPLCLLVMNATGYLNLTRLLSRAYREGQTHEG 111

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+   W+ E   EGL+ L+ G++G + +A   +   VA +RL    ++F  R Y+ L R
Sbjct: 112  PRVLWDWVAE-SAEGLLALSCGAAGEVGQALVNDKPAVARQRLERCLEIFPGRFYLELHR 170

Query: 189  HRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                 D       V LA  +  P+VATN+  F+   ++EAH+  + +A S V+    R  
Sbjct: 171  TGRVGDEEHVHAAVALAEQYACPVVATNDVRFIDASEFEAHEARVCIAESRVLDDPRRQR 230

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R + + YL++  EM  +F D+PEALENTV IARRCS  +++    LP +   E       
Sbjct: 231  RYSEEQYLRSVEEMQELFEDIPEALENTVAIARRCSMEIELGRVCLPDYPVPEGM----T 286

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQ----DYRQRLDFELNVIARMKFSGYFLIVAD 362
             +   R  +  GL+ RL    I +  +A+    DYR RLDFEL+ I  M F GYFLIV D
Sbjct: 287  MDAYFRELSHRGLDERLKTLQIHQRENAEDLERDYRARLDFELDTIIDMGFPGYFLIVMD 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK+  IPVGPGRGSGAGS+ AY L+ITD+DP+ + LLFERFLNP+R+SMPDFD+DF
Sbjct: 347  FIRWAKERGIPVGPGRGSGAGSLVAYCLSITDLDPMEYELLFERFLNPERVSMPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RRDEVI YV   YG E V+QIITFG+L AKA +RDV R     Y   DRL K+IP +
Sbjct: 407  CMERRDEVIDYVAETYGREAVSQIITFGTLAAKAVVRDVARVQGKSYGLGDRLSKMIPFE 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +A+  +   ++    D     + +++ +LEG+ R+   HA G+VI    L+  
Sbjct: 467  VGMTLE-KALEQEESLQQFLRDDSEAQEIWDMAVQLEGVTRNVGKHAGGVVIAPSELTDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVD 597
              +Y D      VTQF+   +E AGL+KFDFLGL+TLT++  +   +           +D
Sbjct: 526  SALYCDGEGAGLVTQFDKNDVEDAGLVKFDFLGLRTLTIIDWAQGMINEIRARNDEPPLD 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DD  ++ LL +  T  +FQLES GM++ +  ++PDC EDIIALV+LYRPGP+ +
Sbjct: 586  INQIPLDDPASFDLLRSAETTAVFQLESRGMKELIARLRPDCFEDIIALVALYRPGPLQS 645

Query: 658  IVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V       +   K         H L+ P+L+ T G+I+YQEQVMQIAQ+L+GY+L  A
Sbjct: 646  GMVDNFIDRKHGREKVSYPDADYQHELLKPVLEPTYGIILYQEQVMQIAQILAGYTLGGA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  F +GA+  G+   +A  +F+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DLLRRAMGKKKPEEMAKQRSVFAAGAASKGVDADLATKLFDLVEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+K HYP  F+AA M+ E+DN +KI  F ++ R+  + +  P VN     F V
Sbjct: 766  LVSYQTAWLKAHYPAAFMAAVMSSELDNTDKIVVFIEECRRMGLTVRLPDVNEGRYMFTV 825

Query: 831  GD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             +   I Y L AIKG+G      ++E+  AD PF  L DFC+R D +KLNR+ LE+LV +
Sbjct: 826  SEAGEIVYGLGAIKGLGEGPVSGLLESREADGPFRDLFDFCARTDPRKLNRKALEALVRS 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH----EKGTFSDKITLEKFS 944
            GA D  G  R  LL  +D+  + A+    NR     ++F       +       +L    
Sbjct: 886  GAFDSLGTERWVLLAGIDDALRAAEQNAANRDAGMVDLFGETVEASQEQGDPYGSLRHVR 945

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                  R + E+  LG Y +GHP+D  +  LR+   +   +     RG N R+A +++S 
Sbjct: 946  PWTDRERLQGERDTLGLYVTGHPIDACEDELRRFAPQRLADLRTDSRG-NCRVAGLILSM 1004

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            +  K+ +G  +      + +   EA 
Sbjct: 1005 RAMKSARG-AMAVFVLDDRSARLEAT 1029


>gi|115352403|ref|YP_774242.1| DNA polymerase III subunit alpha [Burkholderia ambifaria AMMD]
 gi|115282391|gb|ABI87908.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria AMMD]
          Length = 1177

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1044 (39%), Positives = 606/1044 (58%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F Q+A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   KGIKPIAGCDVWITNPDDRDKP----------SRLLLLVKDKVGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL    ++GL+ L+G   G I  AF  ++ + A +    + K+F    Y+
Sbjct: 110  YRGRAELDASWLDGELSQGLLALSGAQQGDIGLAFAADNEEAARRHAERWAKVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q   LA +  LP+VAT+ + F++++D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAATLAASLGLPVVATHPTQFMTDDDFTAHEARVCISEGDMLANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T D Y + + EMV++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   
Sbjct: 230  RRQKRFTTDQYFRTQDEMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GLE RL Q              Y +RL+FE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSKEGLEKRLEQLYPDTAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKAD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCIVNNLVVLPPDINQSHYRFEPVGEAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L A+KG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ A
Sbjct: 826  GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRVVNRRTVEALIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R Q+L S+          +         +F     +      L      + 
Sbjct: 886  GAFDSLNANRAQMLASVP--LAMEAAEQAAANAMQAGLFDMGAES-PHAHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   +           +A ++ S + + 
Sbjct: 943  KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKIGDLKEGRDK---LVAGIIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      + + + E   F
Sbjct: 1000 TQRGK-MLIALLDDGSGQCEITIF 1022


>gi|315636761|ref|ZP_07891990.1| DNA-directed DNA polymerase III alpha subunit [Arcobacter butzleri
            JV22]
 gi|315478978|gb|EFU69682.1| DNA-directed DNA polymerase III alpha subunit [Arcobacter butzleri
            JV22]
          Length = 1187

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/1065 (37%), Positives = 600/1065 (56%), Gaps = 48/1065 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F HL +H+ YSLL+GA  +  +  K+      ++A+TD  N+F A+ F      
Sbjct: 1    MSQIPQFTHLHLHTEYSLLDGANKIKPLAKKLKKLGMTSVAMTDHGNMFGAIAFYNAMRD 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   +++               + L      GY+ L+ L S+ Y+ + 
Sbjct: 61   EGIKPIIGMEAYIHNSEDI-----SDKTNRQRYHLCLYAKNEIGYKNLMYLSSQAYI-NG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTF 174
                 RI    L+E  +EGL+       G I+                  + A+K  L +
Sbjct: 115  FYYYPRINKKILKE-NSEGLVCSAACLQGEINWHLNTQSERNVKFGAKGYEEAKKIALEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            K++FGD  Y+ + RH   D+   + Q+++L+    + +VATN++ +L ++D +AH+  M 
Sbjct: 174  KEIFGDDFYLEIMRHGISDQLFVDDQILKLSKETGIKVVATNDTHYLEQKDADAHEAFMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            +A + +    +R R +  + YLK+  ++  ++SD+PEA+E T EIA +C+  +++  P  
Sbjct: 234  IAMNKLYDDPNRLRHSVHEFYLKSPEQIAKLYSDIPEAIEATQEIADKCNLTIKLGNPTP 293

Query: 293  PRF--------------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
            P F               E E +   + ++    ++   GLE RL    I    H Q+YR
Sbjct: 294  PNFKFTRQKSQEAGLILPEPELEYSLENDKILFIHECRIGLEDRLK---IVPTEHHQEYR 350

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             RL+ E+ +I  MKF GY LIV DF+  AK+  IPVGPGRGS AGS+ A++L ITDIDP+
Sbjct: 351  DRLEVEIEIINNMKFPGYMLIVWDFVIVAKRMGIPVGPGRGSAAGSLVAFSLKITDIDPI 410

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
             + LLFERFLNP+R+SMPD D+DFCQ RR E+I YV  +YG   VAQIITFG L AK  +
Sbjct: 411  PYGLLFERFLNPERVSMPDIDMDFCQSRRGEIIDYVVQQYGRANVAQIITFGKLLAKGVI 470

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
            RDV R L MPYS+ D + KLIP++    +       + + +E   ADP   R+ E +  L
Sbjct: 471  RDVARVLDMPYSKADAMAKLIPDELGIDLKNSW-EKEPKIKELCEADPQAARVWEYALAL 529

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R+A THAAG+VI + PL +  P+++    D   TQ+N K+IE   LIKFDFLGLKT
Sbjct: 530  EGLNRNAGTHAAGVVISNEPLWKKTPLFKPSGLDTLATQYNGKYIEDVDLIKFDFLGLKT 589

Query: 579  LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT+++++   + QR   +V+      +D   Y L+ T  T+G+FQ+ES GM+   + ++P
Sbjct: 590  LTVIEEANKLIEQRHGKRVNFITTDVNDKGVYDLIQTGNTIGLFQIESDGMQDLCKRLKP 649

Query: 638  DCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLID----PMLKETQGVIIY 691
               EDIIA+++LYRPGP+++ +   +  RK+G+ KI   H  ++    P+L+ T GVI+Y
Sbjct: 650  SNFEDIIAVLALYRPGPMESGMLDDFIERKHGRAKIDYFHDELESALKPILENTYGVIVY 709

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVMQI Q + G+SL  AD++RRAMGKKIKEEMD+ K  F  GA   G ++  A  +F+
Sbjct: 710  QEQVMQIVQSVGGFSLGGADLVRRAMGKKIKEEMDRLKGEFADGAQNKGYTRAYAEELFD 769

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            L+ KFA YGFNKSH+AAYA++++ T+++K +YP EF+AA +TLE DN +K+ K+  + ++
Sbjct: 770  LIVKFAGYGFNKSHSAAYALVTFYTSYLKCYYPAEFMAALLTLEKDNTDKVVKYVDETKR 829

Query: 812  FNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
              +++ PP +N   + F      G   + + + AIKG G      I+ A  + PF  L D
Sbjct: 830  LGLELFPPDINKSDLVFSAKKIDGKEVVMFGMGAIKGAGDVAINAILNARGNAPFKDLPD 889

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F SR+D  K+N+RV+ESL  AGA D FGY+R  LL  ++ I          +     ++F
Sbjct: 890  FISRIDGSKVNKRVIESLTKAGAFDSFGYTRKSLLNQIEKIVDTVGKAATAKKMMTGSLF 949

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
               +      I LE  +  +     E E+  LGFY SGHPLD YK  L K+      +  
Sbjct: 950  GDSEELTKIDIELEHLNEFDPKELLEFEKATLGFYVSGHPLDEYKKDLEKINFTLSSQID 1009

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                G+       + S  +K ++KG++ G V+  +     E   F
Sbjct: 1010 ELEDGSQALFVGKIESITEKTSKKGNKFGIVSILDFHGTIEFMLF 1054


>gi|72382105|ref|YP_291460.1| DNA polymerase III subunit alpha [Prochlorococcus marinus str.
            NATL2A]
 gi|72001955|gb|AAZ57757.1| DNA polymerase III, alpha subunit [Prochlorococcus marinus str.
            NATL2A]
          Length = 1172

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1050 (35%), Positives = 586/1050 (55%), Gaps = 34/1050 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV +  HS YSLL+GA  L  ++ +      PA+A+TD   ++ A+E  +   AA I+P
Sbjct: 2    AFVPIHNHSDYSLLDGASQLPLMVQRAKELGMPALALTDHGVMYGAIELLKLCKAANIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          +          +V++     GY+ L++L +  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPQPK----KEKRYHLVVVAKNQIGYENLVKLTTLSHLNGVRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I   +L +  +EGLI  T    G I +A     + VA +    +K++ GD  Y+ 
Sbjct: 118  FSRPCIDK-YLFKKYSEGLICSTACLGGEIPQAILKGRNDVAREVAAWYKEVLGDDFYLE 176

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR   S++V+++   ++ ++ATN++ +LS+ D EAHD L+ V    ++S   
Sbjct: 177  IQDHGSIEDRIVNSEIVKISEELDIKIIATNDAHYLSKNDIEAHDALICVLTGKLISDHK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R R T   Y+K+  EM S+F+D      + + +E   + S  ++ +  +    +      
Sbjct: 237  RLRYTGTEYIKSEDEMRSLFTDHLDKNVINSAIENTVKLSNKVEEYKILGTYKMPNFPIP 296

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
               +    L+   + GL   L             Y++RLD+EL VI +M F  YFL+V D
Sbjct: 297  DGYQPIEYLKEITIKGLLEIL--DISKFENLPITYKERLDYELKVIEQMGFPTYFLVVWD 354

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I++A++ NIPVGPGRGS AGS+ A++L IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 355  YIRFAREQNIPVGPGRGSAAGSLVAFSLHITNIDPVENGLLFERFLNPERKSMPDIDTDF 414

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV  KYG ++VAQIITF  + +KA L+DV R L +PY   DRL KLIP  
Sbjct: 415  CIERRGEVIDYVTKKYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 474

Query: 483  PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
               P  L A+    + +  F E    D  V + ++++ ++EG  +    HAAG+VI    
Sbjct: 475  RGKPAKLAAMISKESPNKDFYEKYNNDSKVKKWVDMAMRIEGTNKTFGVHAAGVVIAANS 534

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-D 597
            L  LVP+ R+      +TQ+ M+ IE  GL+K DFLGL+ LT+++K++D + +   K  D
Sbjct: 535  LDNLVPLQRN-NDGQIITQYFMEDIESLGLLKMDFLGLRNLTMIEKTIDLVEKSIGKRLD 593

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               +PF D +T+ LL+     GIFQLESSGMRQ ++ ++P  +EDI ++++LYRPGP+D 
Sbjct: 594  PDSLPFTDEKTFELLSRGDLEGIFQLESSGMRQIVKDLKPSSLEDISSILALYRPGPLDA 653

Query: 658  --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  + NRK+GKE I   H  ++P+L ET G+++YQEQ+M+IAQ L+GYSL +AD+LRR
Sbjct: 654  GLIPKFINRKHGKESIDFQHQSLEPILSETYGIMVYQEQIMKIAQDLAGYSLGQADLLRR 713

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK   EM + +  F+ GA KNG++  IA  +F+ +  FA+Y FNKSH+ AY  ++YQ
Sbjct: 714  AMGKKKVSEMQRHRAIFVDGAVKNGVTNVIAEQLFDQMVLFAEYCFNKSHSTAYGAVTYQ 773

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYPV ++AA +T+   + +KI+++  +     I +MPP++NT  VDF   DN I
Sbjct: 774  TAYLKAHYPVAYMAALLTVNAGSADKIQRYISNCNSMGINVMPPNINTSGVDFTPKDNSI 833

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             +  +A+K +G    R I+ +   D  F SL  FC R+    +NRR LE+L+ +GALDC 
Sbjct: 834  LFGFSAVKNLGDGAIRKIITSRDEDGQFTSLAQFCDRISLGSVNRRGLEALIHSGALDCL 893

Query: 895  GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD---------KITLEKF 943
                +R QL+  LD   ++A    K+RT+   N+F     T ++             ++ 
Sbjct: 894  EKNANRAQLIADLDLTIEWASSRAKDRTSGQGNLFDLSNSTNNESSPTDDYSSAPKAKEV 953

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                 S + + E+  +GFY S HPL       + +              + + + AM+  
Sbjct: 954  QEYLPSDKLKLEKEHVGFYLSDHPLKQLSEPAKLIAPISLSSLEDQKDKSKVSVIAMIPE 1013

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++  TRKG R+  +   +     EA  FP
Sbjct: 1014 MREVTTRKGDRMAIIQLEDLTGSCEAVVFP 1043


>gi|329115626|ref|ZP_08244348.1| DNA polymerase III subunit alpha [Acetobacter pomorum DM001]
 gi|326695054|gb|EGE46773.1| DNA polymerase III subunit alpha [Acetobacter pomorum DM001]
          Length = 1139

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 486/1037 (46%), Positives = 667/1037 (64%), Gaps = 27/1037 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL+VHS+YSL +GA+ + +I+        PA+ I D+ NLF ALEFSQ    
Sbjct: 1    MSYA-DFVHLRVHSAYSLSQGAIRVPDIVGLAKEMHMPAVGIADSGNLFGALEFSQYCTK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GIQPIIG Q+         +  +   P      +VLL     G   L  L S  +    
Sbjct: 60   SGIQPIIGSQI--------GLPARNDKPGAPAEPVVLLAQNEAGLANLQFLSSAGFQNSD 111

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  + L  L E   EGL++LTGG+ GP+ +      ++ AEK L    + FGDRL V
Sbjct: 112  P-ADPFVSLDLLCEK-AEGLLLLTGGTRGPLFQMLAEGQTEDAEKWLARVHEAFGDRLIV 169

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L RH  G ++  E  V+ LA    LPLVATN   F + + YEA D L+ +A    +++K
Sbjct: 170  ELHRHGLGVEKAVEPGVLTLADRFGLPLVATNECFFPTPKMYEAQDALLCIAQGRTMAEK 229

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR RVTP+H+ K    M ++F+DLP+A +NT+EIARRC+  ++   P+LP   +      
Sbjct: 230  DRFRVTPEHWFKPPEMMRALFADLPDACDNTLEIARRCAIKVETRKPLLPVCPKVR---E 286

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E+  LR  A  GLE R++ G        + Y++RL FEL++I++M F GYF+IVADF
Sbjct: 287  GATEDETLRAMAWEGLEHRMS-GMKLDAETVEKYKERLRFELDIISKMGFPGYFMIVADF 345

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK + IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFC
Sbjct: 346  IQWAKAHGIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFC 405

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QDRRDEVI YV+++YG +RVAQIITFG LQA+AA+RDVGR L +PY  V+R+ +LIPN+P
Sbjct: 406  QDRRDEVISYVRHEYGSDRVAQIITFGKLQARAAVRDVGRVLGLPYGMVNRVAELIPNNP 465

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A PV+  +AIA + + +E R  D ++ RLLEI+Q+LEGL+RHASTHAAG+VIGDRPL QL
Sbjct: 466  AKPVTLKEAIAGEPKLQEMRDNDEALRRLLEIAQQLEGLFRHASTHAAGVVIGDRPLVQL 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD +SD  VTQ+NMK++E+AGL+KFDFLGL TLT+L++ +DF+ + G  VDLS IP
Sbjct: 526  VPLYRDPKSDTLVTQYNMKFVEQAGLVKFDFLGLTTLTILKRGVDFIRRMGKDVDLSHIP 585

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD +TY +L    T G+FQ E +GMR  L+ M+P  IED+IA V+LYRPGP+ NI  Y 
Sbjct: 586  LDDPKTYEMLGRGDTAGVFQFEGAGMRDVLKQMRPTRIEDLIAAVALYRPGPMANIPDYC 645

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G+      H  I  +L+ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+
Sbjct: 646  RRKHGEV-WEPPHEEIRDILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIR 704

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EMD Q+E F  GA+K GI +  AV +F+L+AKFADYGFNKSHAAAYA +SYQTAWMK +
Sbjct: 705  SEMDHQREIFTEGATKRGIDRDKAVEVFDLMAKFADYGFNKSHAAAYAFVSYQTAWMKAN 764

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYY 837
            +PV FLAA M+L  +  EK+    Q+A + +I ++PP++N    DF V         I Y
Sbjct: 765  HPVAFLAACMSLARERTEKLAALRQEAERMHIAVLPPNINKSEADFSVEKQPDGTYAIRY 824

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            +LAAIK VG      ++E   +KPF +L DF  R+D K +NR  LE+L  AGA +C   +
Sbjct: 825  ALAAIKKVGYGAMESLVEVRGEKPFKNLADFAIRIDPKHINRMQLENLAKAGAFECIDKN 884

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R ++ +S D I + A    +   +    +F        + + L +        R   E  
Sbjct: 885  RARVFRSADVILRRAHSQAQEAASGQIGLFGGPGEV--EPLRLVEGHDWPEFERLAMEAE 942

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRI 1015
             +GF+ + HPLD Y  +LR++G+    + +      G  +++A  VV K+++ TR G+++
Sbjct: 943  AIGFHMTAHPLDAYGSVLRRLGVTRTSQLLTAAELGGGRVKIAGCVVDKKERPTRTGNKM 1002

Query: 1016 GWVTFSEPAKEYEANFF 1032
             WV  S+ +   E   F
Sbjct: 1003 AWVRLSDASGGCEVTVF 1019


>gi|270264805|ref|ZP_06193069.1| DNA polymerase III, alpha subunit [Serratia odorifera 4Rx13]
 gi|270041103|gb|EFA14203.1| DNA polymerase III, alpha subunit [Serratia odorifera 4Rx13]
          Length = 1183

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1051 (39%), Positives = 603/1051 (57%), Gaps = 41/1051 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  
Sbjct: 22   MAE-PRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHG 80

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG    +          Q +     +  + +L +  +GYQ L  L+SR Y    
Sbjct: 81   AGIKPIIGADFHV----------QSEVLGDELAQLTVLAANNDGYQNLTLLISRAYQRGY 130

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E   EGLI+L+G   G + +     + Q  ++ L  +++ F D  Y+
Sbjct: 131  GAAGPIIDRDWLIE-HREGLILLSGARQGDVGKFLLRGNQQQVDQCLDFYQQYFPDSYYL 189

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  FL E+D++AH++ +A+     +   
Sbjct: 190  ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFLVEDDFDAHEIRVAIHDGFTLDDP 249

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +   Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 250  KRPRNYSTQQYMRSADEMCELFADIPEALLNSVEIAKRCNVTIRLGE-----YFLPQFPT 304

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +     +Y +RLD EL VI +M F GYFLI
Sbjct: 305  GDMTTEDFLVLKSKEGLEERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLI 364

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 365  VMEFIQWSKDNDVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 424

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 425  VDFCMEKRDLVIEHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 484

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 485  PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 543

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 544  TDFAPLYCDAEGNHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINARRAKSGLE 603

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 604  PIDIAAIPLEDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 663

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     I   H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 664  LQSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTL 723

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA   GI   ++V IF+L+ KFA YGFNKSH+A
Sbjct: 724  GGADMLRRAMGKKNPVEMAKQRGGFEDGAKSRGIDGELSVKIFDLVEKFAGYGFNKSHSA 783

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    
Sbjct: 784  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYH 843

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS---ADKPFDSLEDFCSRVDSKKLNRRVLE 883
            F V D   I Y + AIKGVG      I+EA        F  L D C+R D KKLNRR+LE
Sbjct: 844  FHVNDEGEIVYGIGAIKGVGEGPIEAILEARNSGEQGYFKDLFDLCARSDVKKLNRRILE 903

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEK 942
             L+ +GA D  G  R  L+ SL +  K A    K       ++F    +     + +   
Sbjct: 904  KLIMSGAFDRLGPHRAALMSSLGDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEQSYAN 963

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMV 1001
                   V  + E+  LG Y +GHP+  Y   + +  G +  ++   T RG       +V
Sbjct: 964  VPRWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLV 1023

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++ +   T++G+RIG  T  + +   E   F
Sbjct: 1024 IASRVMVTKRGNRIGICTLDDRSGRLEVMLF 1054


>gi|170691817|ref|ZP_02882981.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M]
 gi|170143101|gb|EDT11265.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M]
          Length = 1196

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1046 (38%), Positives = 603/1046 (57%), Gaps = 39/1046 (3%)

Query: 5    LE--KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            +     P FVHL+VHS +S+ +G + L++++   A D Q A+A+TD  N F  + F ++A
Sbjct: 1    MSPMSDPRFVHLRVHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEA 60

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               G++PI GC + I   D+                ++LLV    GY  L EL+S+  L 
Sbjct: 61   RGKGVKPIAGCDVWITNPDDRDKP----------SRLLLLVKDRRGYLNLCELLSKASLT 110

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +Q +    I   WL+    EGL+ L+G   G I  A    + + A++  L + K+F    
Sbjct: 111  NQYRGRAEIEAGWLESGLGEGLLALSGAQQGDIGLALAAGNQEAAKRNALHWAKVFPGGF 170

Query: 183  YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ LQR  +        Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++
Sbjct: 171  YIELQRCGQPGGEQYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILA 230

Query: 242  QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               R  R TP+ Y + + EM ++F+D+P AL NTVEIA+RC+  L++  P LP F   + 
Sbjct: 231  NPRRQKRFTPEQYFRTQDEMTALFADIPSALANTVEIAKRCNLTLELGKPKLPLFPTPDG 290

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYF 357
              +    ++ L + +  GLE RL Q    +         Y QRL+FE   I +M F GYF
Sbjct: 291  MSL----DDYLVHLSKEGLEKRLEQLYPDEAERAAQRDTYYQRLEFECGTIIKMGFPGYF 346

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPD
Sbjct: 347  LIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPD 406

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + K
Sbjct: 407  FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAK 466

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP  P   V++   + ++   +E    +  V +LLE++Q++EGL R+   HA G++I  
Sbjct: 467  LIPFKPGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAP 526

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593
              L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +     
Sbjct: 527  GKLTDFCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 586

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPG
Sbjct: 587  KDWSLAQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPG 646

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  +  RK+G+E +    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+L
Sbjct: 647  PMDLIPSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 706

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  EEM + +E F  GA+KNG++   A  IF+L+ KFA YGFNKSHAAAYA+++
Sbjct: 707  RRAMGKKKAEEMAQHRELFRQGAAKNGLTGEKADEIFDLMEKFAGYGFNKSHAAAYALLA 766

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-- 831
            Y TAW+K H+P EF+AA+M+L MD+ +K+K   +D     + ++PP +N     F+    
Sbjct: 767  YYTAWLKAHHPAEFMAANMSLAMDDTDKVKILFEDCITNKMTVLPPDINLSAYRFEPVAE 826

Query: 832  -----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                    I Y L AIKG G      I+ A  D PF  + DFC+R+D + +NRR +E+L+
Sbjct: 827  PDGKRSKTIRYGLGAIKGSGQNAIEEILRAREDGPFIDIFDFCNRIDRRVVNRRTVEALI 886

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AGA D    +R QL+ S+    + A+    N       +F       S    L      
Sbjct: 887  RAGAFDTLHQNRAQLIASVSLAMEAAEQASANAL--QAGLF-DMGDAPSQGHELVDEPEW 943

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                + + E+  LGFY SGH  D YK  +R+   +   E           +A ++ S + 
Sbjct: 944  PEKKKLQEEKAALGFYLSGHLFDAYKDEVRRFVRQKIGELKEGRDK---LVAGIIASLRT 1000

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + T++G  +      +   + E   F
Sbjct: 1001 QMTQRGK-MLIALLDDGTGQCEVTVF 1025


>gi|114765486|ref|ZP_01444596.1| DNA polymerase III subunit alpha [Pelagibaca bermudensis HTCC2601]
 gi|114542196|gb|EAU45227.1| DNA polymerase III subunit alpha [Roseovarius sp. HTCC2601]
          Length = 1174

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 502/1066 (47%), Positives = 683/1066 (64%), Gaps = 57/1066 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VH+ YSLLEGA+ L  +     A + PA+A+TDTNNLFSALEFS  A  
Sbjct: 1    MAD-PRFIHLRVHTEYSLLEGAIRLKKLPGLCEAMEMPAVAVTDTNNLFSALEFSVTASG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+D+           G+ P    P +VLL     GY+ L++L S +YL   
Sbjct: 60   AGVQPIVGCQVDL----RYVQPAPGERPKAPAP-VVLLAQNERGYENLMKLNSCLYLRRD 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G +   + L  L+E G EG+I L+GG  GP+ R    N    A+  L    +++ DRLYV
Sbjct: 115  G-ELAHVLLDELEEYG-EGVICLSGGPDGPVGRLLRENHRAAAQTLLTRLHQIYQDRLYV 172

Query: 185  NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G D      R  E   V++AY   +PLVATN+  F  E  YEAHD ++ +A   
Sbjct: 173  ELQRHPGEDGLPEAERLTERGHVEMAYEMGIPLVATNDVYFPKENMYEAHDAMICIAEGA 232

Query: 239  V-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                Q+ R R+TP HYLK   EM ++F+DLPEALENTVEIA+RC+F+            +
Sbjct: 233  YVDQQEPRRRLTPQHYLKTPQEMATLFADLPEALENTVEIAKRCAFMAY--------RRD 284

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    +E  ELR +A  GL+ RL+   I      + Y++RLDFEL +I  M F GYF
Sbjct: 285  PILPKFADDEVVELRRQANEGLQKRLS--VIPHAVTVEKYQERLDFELGIIEGMGFPGYF 342

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 343  LIVADFIKWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 402

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 403  FDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSK 462

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS++  + D+ R RE    +  VDRLL+   ++EGL R A THAAG+VI D
Sbjct: 463  MIPVEGVKPVSIEKALQDEPRLREEAEREEVVDRLLKYGMQVEGLLRSAGTHAAGVVIAD 522

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RP  +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + + G  +
Sbjct: 523  RPTDELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLILKSGRPI 582

Query: 597  D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                               ++LIP DD +TY L  +  T+ +FQ+ES+GM  AL+ M+P 
Sbjct: 583  HVAADGSQLYEPAEGGENQMNLIPLDDDKTYKLYASAKTVAVFQVESTGMMDALKRMKPT 642

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI VY   KNG+ +I S+HP ID +L ETQG+I+YQEQVMQI
Sbjct: 643  CIEDIVALVALYRPGPMENIPVYCEVKNGQREITSVHPSIDHILAETQGIIVYQEQVMQI 702

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ ++GYSL  AD+LRRAMGKKIKE MD ++ +F SGA+KNG+ K  A  +F+LL KFA+
Sbjct: 703  AQEMAGYSLGGADLLRRAMGKKIKEAMDAERPKFESGAAKNGVEKKKATEVFDLLEKFAN 762

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   EK+  +  + ++   +  +
Sbjct: 763  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTEKLAVYFYETKKGLKLDYI 822

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA---------DKPFDSLEDF 868
            PP VN     F V D ++ Y+L A+K VG    R ++E            DKPF ++ DF
Sbjct: 823  PPCVNRSQASFDVEDGKLVYALGALKNVGLDAMRLVVEGRRSVPEDPRSPDKPFVNVYDF 882

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              RVD K++ +R LE +  AG  D    +R ++ +SLD +  Y+  + + + +   ++F 
Sbjct: 883  ARRVDLKRVGKRPLEMMARAGCFDQLDRNRRRIFESLDALVAYSAAIHEQKASAQVSLFG 942

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
             E G    +  L        + R   E + +GFY SGHPLD Y P L++  +   +E   
Sbjct: 943  -EAGDDLPEPRLSPAPDWLPAERLSEEFKAIGFYLSGHPLDDYMPALKRRDVLTLDEVED 1001

Query: 989  TIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              RG     ++  +V  +Q++K+ KG+R  +   S+P+  YE   F
Sbjct: 1002 KARGGACIAKMGGVVAGRQERKSAKGNRFAFAQLSDPSGAYEVTIF 1047


>gi|302866756|ref|YP_003835393.1| DNA polymerase III subunit alpha [Micromonospora aurantiaca ATCC
            27029]
 gi|315503171|ref|YP_004082058.1| DNA polymerase iii, alpha subunit [Micromonospora sp. L5]
 gi|302569615|gb|ADL45817.1| DNA polymerase III, alpha subunit [Micromonospora aurantiaca ATCC
            27029]
 gi|315409790|gb|ADU07907.1| DNA polymerase III, alpha subunit [Micromonospora sp. L5]
          Length = 1177

 Score =  751 bits (1939), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/1061 (32%), Positives = 536/1061 (50%), Gaps = 44/1061 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YS+L+GA  L ++  + A    PA+AITD  N+  A +F ++A  AG++P
Sbjct: 4    SFAHLHVHTEYSMLDGAARLKDLFAEAARLGMPAVAITDHGNMHGANDFYKQAMDAGVKP 63

Query: 70   IIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            I+G +  +  +                    +    +  + +  +  +G   L +L SR 
Sbjct: 64   ILGVEAYVAPESRFHKARVKWGRPEQKSDDVSGNGAITHMTMWAANRDGLHNLFKLNSRA 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             +     +  R+ +  + E   EG++  TG  SG +           A K    ++ +FG
Sbjct: 124  SMEGHYVKWPRMDMELIAE-HAEGIMATTGCPSGAVQTRLRLGQFDEALKVAAAYQDIFG 182

Query: 180  -DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ +  H    +R     + ++A   ++P V TN+S +  E   EAHDVL+ V   
Sbjct: 183  KDNYFLEIMDHGLDIERRVRDGLTEIARKLDIPPVVTNDSHYTHEAQAEAHDVLLCVQTG 242

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            + V+  +R R     Y    ++ +          +           +           + 
Sbjct: 243  SNVADPNRFRFEGGGYFVKSADQMRAVDSSELWQQGCRNTLLVAEKVDPAGMFTFHNLMP 302

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            +      + EE+  R +  AGL  R   G         +Y      EL VI +M F  YF
Sbjct: 303  RFPIPEGETEESWFRKETFAGLARRFPGGIPEGHVVQAEY------ELGVIIQMGFPSYF 356

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+VADFIQWAK   I VGPGRGS AGS+ AYAL ITD+DP+   L+FERFLNP+R+SMPD
Sbjct: 357  LVVADFIQWAKSQGIAVGPGRGSAAGSLVAYALGITDLDPIPHGLIFERFLNPERVSMPD 416

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             DIDF + RR EVI+YV +K+G ++VAQI TFG+++AKAA++D  R L  PY+  DR+ K
Sbjct: 417  VDIDFDERRRGEVIKYVTDKWGEDKVAQIATFGTIKAKAAIKDSARVLGFPYAVGDRITK 476

Query: 478  LIPN-DPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
             +P       +             A+    R    +DP V +++E ++ +EGL R    H
Sbjct: 477  AMPPAVMGKDIPLSGIFDPKHPRYAEAGEIRGLYESDPDVKKVIETAKGIEGLIRQTGVH 536

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAG+++   P+ + +P+ R     + +TQF+    E  GL+K DFLGL+ LT++  ++  
Sbjct: 537  AAGVIMSAEPIIEHIPLMRRDSDGVIITQFDYPTCESLGLLKMDFLGLRNLTIIDDAVKN 596

Query: 589  -LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
                 G ++DL  +P DD + Y LL    TLG+FQL+   MR  L  M+PD  EDI A++
Sbjct: 597  IQLNHGRELDLLGLPLDDRQAYELLARGDTLGVFQLDGGPMRSLLRLMKPDNFEDISAVL 656

Query: 648  SLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQVMQIAQL 701
            +LYRPGP+  D+   Y  RKNG ++I  IHP ++      L  T G+I+YQEQV + AQ+
Sbjct: 657  ALYRPGPMGVDSHTNYALRKNGLQEITPIHPELEEPLREILAPTYGLIVYQEQVQRAAQI 716

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            L+GY+L +AD+LRRAMGKK KE +DK+   F  G  + G S      ++++L  FA Y F
Sbjct: 717  LAGYTLGQADLLRRAMGKKKKEILDKEFIPFRDGCRERGYSDEAIQAVWDVLVPFAGYAF 776

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NK+H+AAY ++SY TA++K HYP E++AA +T   D+ +K+  +  + R+  IQ++PP V
Sbjct: 777  NKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKMALYLSECRRMRIQVLPPDV 836

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRR 880
            NT    F      I + L A++ VG      IM    +   +    DF S+VD+   N++
Sbjct: 837  NTSAGPFTPVGKEIRFGLGAVRNVGANVVASIMRCREEKGDYTDFYDFLSKVDAVVCNKK 896

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----HEKGTFS 935
             +ESL+ AGA D   + R  LL    +       V++       ++F       + G  +
Sbjct: 897  TIESLIKAGAFDSLQHPRKGLLAVHADAIDAYADVKRKEAVGQYDLFGAGFGEADTGGST 956

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA---TIRG 992
              + +      +   +   E+ +LG Y S HPL   + +L                   G
Sbjct: 957  TVMPVIGEGEWDKRDKLAFEREMLGLYVSDHPLFGLEHVLGAAADTTIAALSEEGTVPDG 1016

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + LA ++   Q++ T++G      T  + A   E  FFP
Sbjct: 1017 AVVTLAGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFP 1057


>gi|91782537|ref|YP_557743.1| DNA polymerase III subunit alpha [Burkholderia xenovorans LB400]
 gi|91686491|gb|ABE29691.1| DNA polymerase III, alpha subunit [Burkholderia xenovorans LB400]
          Length = 1193

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1046 (38%), Positives = 608/1046 (58%), Gaps = 39/1046 (3%)

Query: 5    LE--KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            +     P FVHL+VHS +S+ +G + L++++   A D Q A+A+TD  N F  + F ++A
Sbjct: 1    MSPMSDPRFVHLRVHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEA 60

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               G++PI GC + I   D+ +              ++LLV    GY  L EL+S+  L 
Sbjct: 61   RGKGVKPIAGCDVWITNPDDREKP----------SRLLLLVKDRRGYLNLCELLSKASLT 110

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +Q +    I   WL+    EGL+ L+G   G I  A    + + A++  L + K+F    
Sbjct: 111  NQYRGRAEIEAGWLESGLGEGLLALSGAQQGDIGLALAAGNEEAAKRNALHWAKVFPGGF 170

Query: 183  YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +QR  +    +   Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++
Sbjct: 171  YIEVQRCGQPGGEHYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILA 230

Query: 242  QKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               R  R TP+ Y + + EM ++F+D+P AL N+VEIA+RC+  L++  P LP F   + 
Sbjct: 231  NPRRSKRFTPEQYFRTQEEMAALFADIPSALTNSVEIAKRCNLTLELGKPKLPLFPTPDG 290

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYF 357
              +    ++ L + +  GLE RL Q    +   A     Y +RL+FE   I +M F GYF
Sbjct: 291  MSL----DDYLVHLSKEGLEKRLEQLYPDEAERAAQRATYYERLEFECGTIIKMGFPGYF 346

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPD
Sbjct: 347  LIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPD 406

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + K
Sbjct: 407  FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAK 466

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP  P   V++   + ++   +E    +  V +LLE++Q++EGL R+   HA G++I  
Sbjct: 467  LIPFKPGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAP 526

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593
              L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +     
Sbjct: 527  GKLTDFCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 586

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPG
Sbjct: 587  QDWSLAQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPG 646

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  +  RK+G+E +    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+L
Sbjct: 647  PMDLIPSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 706

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  EEM + +E F  GA+KNG++   A  IF+L+ KFA YGFNKSHAAAYA+++
Sbjct: 707  RRAMGKKKAEEMAQHRELFRQGAAKNGLTGEKADEIFDLMEKFAGYGFNKSHAAAYALLA 766

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-- 831
            Y TAW+K H+P EF+AA+M+L MD+ +K+K   +D     + ++PP VN     F+    
Sbjct: 767  YYTAWLKAHHPAEFMAANMSLAMDDTDKVKILFEDCLVNKMAVLPPDVNLSAYRFEPVAE 826

Query: 832  -DNR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             D +    I Y L AIKG G      I+ A  + PF  + DFC+RVD + +NRR +E+L+
Sbjct: 827  PDGKRSRTIRYGLGAIKGSGQNAIEEILRAREEGPFIDIFDFCNRVDRRIVNRRTVEALI 886

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AGA D    +R QL+ S+    + A+    N       +F       S    L      
Sbjct: 887  RAGAFDSLHANRAQLIASVSLAMEAAEQASANAL--QAGLF-DMGDAPSQGHELVDEPEW 943

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                + + E+  LGFY SGH  D YK  +R+   +   E           +A ++ S + 
Sbjct: 944  PEKKKLQEEKAALGFYLSGHLFDAYKDEVRRFVRQKIGELKEGRDK---LVAGVIASLRT 1000

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + T++G  +      +   + E   F
Sbjct: 1001 QMTQRGK-MLIALLDDGTGQCEVTVF 1025


>gi|294676350|ref|YP_003576965.1| DNA polymerase III subunit alpha [Rhodobacter capsulatus SB 1003]
 gi|294475170|gb|ADE84558.1| DNA polymerase III, alpha subunit [Rhodobacter capsulatus SB 1003]
          Length = 1169

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 491/1060 (46%), Positives = 673/1060 (63%), Gaps = 51/1060 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VH+ YSLLEGA+ +  ++    A   PAIA+TDTN +F+ALEFS  A  
Sbjct: 1    MSD-PRFIHLRVHTEYSLLEGAVPVKKLIKLCDAMNMPAIAVTDTNAMFAALEFSVLAQG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+ +  +    +   G+ P    P +VLL     GY  L++L S +Y +D+
Sbjct: 60   AGLQPIVGCQVSVAYE----VAAPGEKPRLPAP-VVLLAQNEAGYMNLMKLSSCLY-VDK 113

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G Q  ++ L  L E   EGLI L+GG+ GP+ +    + +  A   +      +  RLYV
Sbjct: 114  GGQLPQVTLEDL-EAHAEGLICLSGGAEGPVGKLLQHSQAGKARLLMERLAACYPTRLYV 172

Query: 185  NLQRHRGY-------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             LQRH G        +R  E   V++AY   LPLVATN+  F   + YEAHD ++ +A  
Sbjct: 173  ELQRHPGEGGQLTEGERMTERPFVEMAYDLGLPLVATNDVYFPKSDMYEAHDAMICIAEG 232

Query: 238  TV-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
                  + R R+TP HYLK  +EM ++F+DLPEALENTVEIA+RC+F             
Sbjct: 233  AYVDQIEPRRRLTPQHYLKTEAEMAALFADLPEALENTVEIAKRCAFAAFKRK------- 285

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                     +E  ELR +A  GL  RLA   I       +Y +RL FEL +I +M F GY
Sbjct: 286  -PILPRFADDEVEELRRQAWEGLRARLA--VIPHAVPVAEYEERLKFELGIIEQMGFPGY 342

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFI+W K   IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMP
Sbjct: 343  FLIVADFIKWGKSQGIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMP 402

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RDVGR LQM Y  VD+L 
Sbjct: 403  DFDIDFCMDRREEVIKYVQGKYGRDKVGQIITFGALLSKAAVRDVGRVLQMSYGHVDKLS 462

Query: 477  KLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            K+IP +   PVS++  +AD+ R REA  ++  V RLL  +Q +EGL R+ASTHAAG+VIG
Sbjct: 463  KMIPVEGVKPVSIEKALADEPRLREAAKSEEVVARLLNYAQAIEGLLRNASTHAAGVVIG 522

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            DRPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + + G  
Sbjct: 523  DRPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVNLILKSGRP 582

Query: 596  VD------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            +                   ++LIP DD +TY L     T+ +FQ+ES+GM  AL  M+P
Sbjct: 583  LHVNPLGETLYTPAEGAANEINLIPIDDAKTYELYAAAKTVAVFQVESTGMMDALRRMKP 642

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             CIEDI+ALV+LYRPGP++NI  Y   K+G   + S+HP IDP+LKETQG+I+YQEQVMQ
Sbjct: 643  TCIEDIVALVALYRPGPMENIPTYCEVKHGLRPLESLHPTIDPILKETQGIIVYQEQVMQ 702

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS-KNGISKTIAVNIFELLAKF 756
            IAQ+++GYSL  AD+LRRAMGKKI EEM K++ +FI GA   + I    A  +F+LL KF
Sbjct: 703  IAQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFIEGAKATHNIDAKKAGEVFDLLEKF 762

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQ 815
            A+YGFNKSHAAAYA++SYQTAW+K ++PVEF+A  M  ++   +K+  +  +AR+   I+
Sbjct: 763  ANYGFNKSHAAAYAIVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAIYTAEARRGLGIE 822

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            ++PP VN     F V D ++ Y+L A+K VG    R I +A  DKPF  L +F  R D K
Sbjct: 823  VVPPCVNRSLATFDVVDQKLIYALGALKNVGVEAMRLIEKAREDKPFRDLVEFARRCDLK 882

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            ++ +R LE L  AGA D    +R ++ +SL+++  ++  V + +++   ++F  E G   
Sbjct: 883  RIGKRPLEMLARAGAFDKLDPNRKRVFESLESLMAWSAAVAEAKSSAQVSLFG-EAGDDL 941

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN-- 993
                L          R   E + +GFY SGHPLD Y P L++  +    +  A   G   
Sbjct: 942  PPPRLADTDDWLPGERLAEEHKAIGFYLSGHPLDDYLPALKRKKVLTLADVTAKALGQGP 1001

Query: 994  -NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               ++A  V ++ ++K+ KG+R  +V+ S+P   YE   F
Sbjct: 1002 FIGKIAGQVAARSERKSAKGNRFAFVSLSDPTGPYEVTVF 1041


>gi|254436926|ref|ZP_05050420.1| DNA polymerase III, alpha subunit subfamily, putative [Octadecabacter
            antarcticus 307]
 gi|198252372|gb|EDY76686.1| DNA polymerase III, alpha subunit subfamily, putative [Octadecabacter
            antarcticus 307]
          Length = 1172

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 490/1061 (46%), Positives = 668/1061 (62%), Gaps = 48/1061 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+ H+ YSLLEGA+ +  I         PA+A+TDTNNLF ALEFS+ A  
Sbjct: 1    MAD-PRFIHLRTHTEYSLLEGAVPVKKICALAEKFDMPAVAVTDTNNLFCALEFSEYAAK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPIIGCQ+D+ +  +         P P  P IVLL     GY  L++L S  YL   
Sbjct: 60   AGVQPIIGCQIDLGLSADEPAQRNHTRPEPPAP-IVLLAQNEAGYMNLMKLNSCAYLDAD 118

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G Q  +I +  L    + G+I L+GG  GP+ R         AE  +     +F DRLYV
Sbjct: 119  G-QLPQISIDDLAMY-SGGVICLSGGPDGPVGRLLRAGQRPAAEALMAQLAAIFPDRLYV 176

Query: 185  NLQRH----RGYDRYRESQV--VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH       +    S+   V++AY  +LPLVATN+  F     YEAHD L+ +A   
Sbjct: 177  ELQRHPVDGGLPEAEHLSEQGHVEMAYAMDLPLVATNDVYFPKTSIYEAHDALICIADGA 236

Query: 239  V-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                 + R R+TP HY K++ EMV++F+DLPEA+ NTVEIA+RC+F +            
Sbjct: 237  YVDQNEPRRRLTPQHYFKSQQEMVTLFADLPEAIANTVEIAKRCAFKVYTRD-------- 288

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                     E +EL+ +A AGL  RL    I      +DY +RLDFEL +I  M F GYF
Sbjct: 289  PILPKFADNEIDELKRQAHAGLTDRLK--VIPHAVSVEDYEKRLDFELGIIEGMGFPGYF 346

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI++AK N+IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 347  LIVADFIKFAKDNDIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 406

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQ+PY QVD+L K
Sbjct: 407  FDIDFCMDRREEVIRYVQGKYGRDKVGQIITFGALLSKAAIRDVGRVLQLPYGQVDKLSK 466

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS+   +AD+ R RE    +  VDRLL   Q+LEGL R+ASTHAAG+VIGD
Sbjct: 467  MIPVEGVKPVSIVKALADEPRLREMAKNEEVVDRLLTYGQQLEGLLRNASTHAAGVVIGD 526

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            R L +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ + + G  +
Sbjct: 527  RSLDELVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVNLILKSGRDL 586

Query: 597  D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                               ++ IP DD  +Y L     T+ +FQ+ESSGM  AL  M+PD
Sbjct: 587  HTGPMGAELYVPATGTINDINAIPLDDEASYKLYAAAKTVAVFQVESSGMMDALRRMKPD 646

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDIIALV+LYRPGP++NI  +   KNG  +   +HP ID +L ETQG+I+YQEQVMQI
Sbjct: 647  CIEDIIALVALYRPGPMENIPKFCEVKNGLSEREKLHPSIDHILDETQGIIVYQEQVMQI 706

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ ++GYSL  AD+LRRAMGKK++E MD +K +F++G+ ++G+ K  A+ +++LL KFA+
Sbjct: 707  AQEMAGYSLGGADLLRRAMGKKLQEAMDVEKPKFLAGSLEHGVDKKKAMEVWDLLDKFAN 766

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + Q+ ++   +   
Sbjct: 767  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLGLPWS 826

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADK--PFDSLEDFCSRVDS 874
            PP VNT    F V +  + Y L A+K VG      I++A  A+   PF +L D   RVD 
Sbjct: 827  PPCVNTSLATFDVQNGTLVYGLGALKNVGVDAMGLIVDARLAEGMSPFSTLFDLARRVDI 886

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            K++ +R LE L  AGA D    +R ++  SLD +  Y+  + + + +   ++F  E G  
Sbjct: 887  KRVGKRPLEMLARAGAFDVLDPNRRKVFASLDALVGYSSAIHEQKNSNQVSLFG-EAGDD 945

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK-MGIKGYEESVATIRGN 993
              +  L        + R   E + +GFY SGHPLD Y   L++   +   +E  A   G 
Sbjct: 946  LPEPRLSAVQDWLPAERLSEEFKAVGFYLSGHPLDDYMAALKRTEKVLTLDEVTAKAAGG 1005

Query: 994  NI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +  ++A  V  +Q++K+ +G+R  +V  S+P  +YE   F
Sbjct: 1006 AMVCKMAGTVAGRQERKSARGNRFAFVQLSDPTGQYEVTMF 1046


>gi|324998887|ref|ZP_08119999.1| DNA polymerase III subunit alpha [Pseudonocardia sp. P1]
          Length = 1185

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1075 (33%), Positives = 549/1075 (51%), Gaps = 59/1075 (5%)

Query: 5    LEKSP--SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            +  S   SFVHL  H+ +S+L+GA  L+++  +   +   A+A+TD  N++ A EF +KA
Sbjct: 1    MASSGAGSFVHLHTHTEFSMLDGAARLDDLFSEAVKNDMSAVAMTDHGNVYGAFEFWRKA 60

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRL 112
             AAG++PIIG +  +      +               K P      + LL    EG   L
Sbjct: 61   KAAGVKPIIGMEGYLAPGSRHERKRVALGGSNPGAADKNPDLMYTHMTLLAENTEGMHNL 120

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
              L S   L +      R+    L++ GT GLI  TG  SG + R    +  + A +   
Sbjct: 121  FRLSSLASL-EGYYYKPRMDRELLEQYGT-GLIGTTGCPSGEVARLLQQDDFEGACQAAS 178

Query: 173  TFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             ++ +FG D  +  L  H    ++  +  +  L    +LP +ATN+  +   +D +AH+V
Sbjct: 179  DYRDIFGKDNFFCELMDHGIEIEKRVQEDLFALKKRLDLPGLATNDLHYTYPDDTKAHEV 238

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVH 288
            L+ V     ++  +R +     +    +  +    D     A +NT+ +A RC       
Sbjct: 239  LLCVQTGKTLADPNRFKFDAQDFYLKSATEMRELWDPIHPEACDNTLWVAERCDIDFTTG 298

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
              + P+    E +     EE+ L  +   GL  R   G        + YR + ++E+ VI
Sbjct: 299  QDLQPKAPVPEGE----TEESWLIKEVERGLHDRFPNG------ITEQYRTQANYEVGVI 348

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M + GYFL+ AD I+ AK   I  GPGRGS AGS+ AY L ITD+DP+R  L+FERFL
Sbjct: 349  IKMGYPGYFLVTADLIRHAKSVGIRCGPGRGSAAGSLVAYVLGITDLDPIRHKLIFERFL 408

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR--ALQ 466
            NPDR+SMPD D+DF + RR E+IRYV  KYG +R+AQIIT+ +++AKAA++D  R    Q
Sbjct: 409  NPDRVSMPDIDMDFDERRRGEMIRYVTEKYGEDRIAQIITYSTIKAKAAIKDSARVLFGQ 468

Query: 467  MPYSQVDRLCKLIPN-DPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQK 517
              YS  DR+ K +P       +        S +  ++ +  R    ADP V  +++ ++ 
Sbjct: 469  PGYSVADRISKAMPPAVMGKDIPLSGIFDPSHKRYSEATEVRALYEADPQVKEIVDTARG 528

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R    HAAG+++   PL  ++P+ R       +TQF+M   E  GL+K DFLGL+
Sbjct: 529  LEGLKRQWGVHAAGVIMSSTPLIDVIPIQRRESDGAVITQFDMGVCETIGLLKMDFLGLR 588

Query: 578  TLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT+L  +L+ +      +VDL  +  DD  TY LL+   TLG+FQL+   MR  L  M 
Sbjct: 589  NLTILDDALENITLNGKPEVDLDHVELDDGPTYELLSRGDTLGVFQLDGGPMRDLLRRMA 648

Query: 637  PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVII 690
            P   E I A+ +LYRPGP+  +    Y +RKNG+++I  IHP +   LK+    T G+I+
Sbjct: 649  PSEFEHISAVGALYRPGPMGANAHNDYADRKNGRQEITPIHPELAEPLKDVLGETFGLIV 708

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVM IAQ+L+GYSL +AD+LRRAMGKK KE +DK+   F  G   NG S      ++
Sbjct: 709  YQEQVMSIAQVLAGYSLGQADLLRRAMGKKKKEILDKEYVGFAQGMKDNGYSADAVKTLW 768

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            ++L  F+DY FN++H+AAY V+SY TA++K +YP E++A  +T   D+ +K   +  + R
Sbjct: 769  DILLPFSDYAFNRAHSAAYGVVSYWTAYLKANYPAEYMAGVLTSVRDDKDKAAVYLAECR 828

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFC 869
            +  + ++PP VN    +F    N I + L  I+ VG      I+ A      F    DF 
Sbjct: 829  RMGVTVLPPDVNDSVRNFAPVGNDIRFGLGGIRNVGHNVVDAIVAARREKGNFVDFSDFL 888

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             +VD+   N++V+ESL+ AGA D  G+SR  LL    +        +K  +    ++F  
Sbjct: 889  RKVDAVVCNKKVVESLIKAGAFDSLGHSRKGLLLVHADAIDAVMSTKKAASLGQFDLFGS 948

Query: 930  EKGTFSD---------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
              G+  D          + + +    +S  +   E+ +LG Y SGHPL   +  L     
Sbjct: 949  MDGSGGDDGDELGGIFDVKVPE-EEWDSKHKLAVEREMLGLYVSGHPLQGLEQALAAKAD 1007

Query: 981  KGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                + V      G  + +  ++ +  ++  + G         + A   E  FFP
Sbjct: 1008 TSIADIVEGSVAEGGQVTVGGILANVNRRVNKNGEPWASAQIEDLAGGIEVLFFP 1062


>gi|254247600|ref|ZP_04940921.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184]
 gi|124872376|gb|EAY64092.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184]
          Length = 1177

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1044 (39%), Positives = 606/1044 (58%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + +++I+   AAD Q A+A+TD  N F  + F Q+A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   KGIKPIAGCDVWIANPDDRDKP----------SRLLLLVKDKVGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL     +GL+ L+G   G I  A    + + A +    + ++F    Y+
Sbjct: 110  YRGRAELDASWLDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAERWARVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q   LA + +LP+VAT+ + F++++D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAAALAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T D Y + + EM ++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   
Sbjct: 230  RRQKRFTTDQYFRTQDEMAALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAI---AKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GLE RLAQ       +      Y +RL+FE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSKEGLEARLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKAD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L A+KG G      I+ A  +K F  L DFC R+D + +NRR +E+L+ A
Sbjct: 826  GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R QL+ S+    + A   E N       +F     +      L      + 
Sbjct: 886  GAFDSLNPNRAQLIASVPLAMEAADQAEANAM--QAGLFDMGAES-PHAHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   +           +A ++ S + + 
Sbjct: 943  KRRLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKVGDLKEGRDK---LVAGIIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MLIALLDDGTGQCEITIF 1022


>gi|255262260|ref|ZP_05341602.1| DNA polymerase III subunit alpha [Thalassiobium sp. R2A62]
 gi|255104595|gb|EET47269.1| DNA polymerase III subunit alpha [Thalassiobium sp. R2A62]
          Length = 1169

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 488/1056 (46%), Positives = 671/1056 (63%), Gaps = 51/1056 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F+HL++H+ YSLLEGA+ +  +         PA+A+TDTNN+F ALEFS+ A  +GIQP
Sbjct: 5    RFIHLRLHTEYSLLEGAIPVKKLPQMCINADMPAVAVTDTNNMFCALEFSEGAAKSGIQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGCQ+D+          QG+   P  P +VLL     GY  L++L S  Y+ D G    
Sbjct: 65   IIGCQIDLTYD----QAEQGQREKPPAP-LVLLAQNETGYANLMKLNSCEYI-DAGGALP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            ++ L  L++  ++GLI L+GG +GP+ +         A+  +      + +RLYV LQRH
Sbjct: 119  QVSLEELEQY-SDGLICLSGGPNGPVGQFLQQGQGPKAQALMTRLAATYPNRLYVELQRH 177

Query: 190  RG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV-VSQ 242
             G       ++  E+ ++ +AY   LPLVATN+  F   E YEAHD L+ +A       Q
Sbjct: 178  PGDGGLPDNEQRTETALIDMAYAMGLPLVATNDVYFPKPEIYEAHDALICIAEGAYVDQQ 237

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            + R R+TP HY K+  EM+++F+DLPEA+ENT+EIARRC+F                   
Sbjct: 238  EPRRRLTPQHYFKSPQEMITLFADLPEAVENTIEIARRCAFKAYKRD--------PILPK 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
               +E  ELR +A AGL+ RLA   I      ++Y +RLDFEL++I  M F GYFLIVAD
Sbjct: 290  FADDEVEELRRQAHAGLKDRLA--VIPHAVTVEEYEKRLDFELDIIEGMGFPGYFLIVAD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+K N IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDIDF
Sbjct: 348  FIKWSKDNAIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDF 407

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVD L K+IP +
Sbjct: 408  CMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDSLSKMIPVE 467

Query: 483  PAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
               PVS+   +AD+ R REA   +  VDRLL   Q++EGL R+ASTHAAG+VIGDRPL  
Sbjct: 468  GVKPVSIVKALADEPRLREAAQNEEVVDRLLTYGQQVEGLLRNASTHAAGVVIGDRPLDA 527

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD---- 597
            LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D + +    +     
Sbjct: 528  LVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDLILKSNRSIHVAAD 587

Query: 598  --------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
                          ++ IP DD  +Y L  +  T+ +FQ+ES+GM  AL  M+PDCIEDI
Sbjct: 588  GAELYTPANGTENDINAIPLDDDASYKLYASAKTVAVFQVESTGMMDALRRMKPDCIEDI 647

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            IALV+LYRPGP++NI  +   KNG      +HP ID +L ETQG+I+YQEQVMQIAQ ++
Sbjct: 648  IALVALYRPGPMENIPKFCEVKNGLSDRDLLHPTIDHILDETQGIIVYQEQVMQIAQEMA 707

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
             YSL  AD+LRRAMGKKI+E MD +K +F+SG+ +NG+ +  A  +++LL KFA+YGFNK
Sbjct: 708  NYSLGGADLLRRAMGKKIQEAMDAEKPKFLSGSKENGVDEKKAKEVWDLLDKFANYGFNK 767

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVN 822
            SHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + Q+ ++   +   PP VN
Sbjct: 768  SHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFQEVKKGLGLPYSPPCVN 827

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS----ADKPFDSLEDFCSRVDSKKLN 878
                 F V D  + Y+L A+K VG    R + +      ADKPF ++ D   RVD K++ 
Sbjct: 828  RSQATFDVVDGTLVYALGALKNVGVEAMRMMTDGRMVEGADKPFANVFDMARRVDLKRVG 887

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            +R LE L  AGA D    +R ++  SLD +  Y+  +   R +   ++F  E G    + 
Sbjct: 888  KRPLEMLARAGAFDQLDPNRRRIFDSLDALTNYSAAIHDQRGSNQVSLFG-EAGDDLPEP 946

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE--SVATIRGNNIR 996
             L   +    + R   E + +GFY SGHPLD Y P L++ G    ++    A      ++
Sbjct: 947  RLSPVTDWLPAERLAEEFKAIGFYLSGHPLDDYMPALKRKGALTLDDVMLKAERGACVVK 1006

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +A  V  +Q++K+ +G+R  +V  S+P  ++E   F
Sbjct: 1007 MAGTVSGRQERKSARGNRFAFVQLSDPTGQFEVTMF 1042


>gi|296274562|ref|YP_003657193.1| DNA polymerase III subunit alpha [Arcobacter nitrofigilis DSM 7299]
 gi|296098736|gb|ADG94686.1| DNA polymerase III, alpha subunit [Arcobacter nitrofigilis DSM 7299]
          Length = 1180

 Score =  750 bits (1937), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1066 (35%), Positives = 598/1066 (56%), Gaps = 49/1066 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F HL +H+ YSLL+GA  + ++  KI A    ++A+TD  N+F A++F +   A
Sbjct: 1    MSQIPEFTHLHLHTEYSLLDGANKIKDLAKKIKALGMKSVAMTDHGNMFGAIDFYKAMKA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   + L               + L      GY+ L+ L S+ Y+   
Sbjct: 61   EGIKPIIGMEAYIHNSEEL-----DDKSHRKRFHLCLYAKNQVGYKNLMFLTSQAYMHG- 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTF 174
                 RI    L+E  +EGL+       G ++                  + A++  L +
Sbjct: 115  FYYYPRINKKILRE-NSEGLVCSAACLQGEVNWHLNTQSERNVKNGAKGYEEAKRIALEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            K++FGD  Y+ + RH   D++  + Q+++++    + +VATN++ +L ++D +AH+  M 
Sbjct: 174  KEIFGDDFYLEIMRHGISDQHFIDDQILRISKETGIKVVATNDTHYLKQKDAQAHEAFMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            +A + +    +R R +  + YLK+  ++  +++D+PE +  T EI  +C+  +++  P  
Sbjct: 234  IAMNKLYDDPNRLRHSVHEFYLKSSEQISKLYADIPETIAATQEIVEKCNLEIKLGDPTP 293

Query: 293  PRF--------------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
            P F               E E +   + ++    ++   GLE RL    I      Q+Y+
Sbjct: 294  PNFKFTREKSQEEGLTLPEPELEYSLENDKILFVHECWKGLEKRLE---IVPQERHQEYK 350

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             RL  E+++I  MKF GY LIV DF+  AK+  IPVGPGRGS AGS+ A++L ITDIDPL
Sbjct: 351  DRLQVEIDIINSMKFPGYMLIVWDFVIAAKQMKIPVGPGRGSAAGSLVAFSLAITDIDPL 410

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
             + LLFERFLNP+R+SMPD D+DFCQ RR E++ YV  KYG   VAQIITFG L AK  +
Sbjct: 411  PYGLLFERFLNPERVSMPDIDMDFCQARRQEILDYVIEKYGRANVAQIITFGKLLAKGVI 470

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
            RDV R L MPYSQ D + KLIP++    ++      + + +E   ++P   R+ + +  L
Sbjct: 471  RDVARVLDMPYSQADAMAKLIPDELGINLTSS-YEKEPKIKELCDSNPQAKRVWDFAIAL 529

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R+A THAAG+VI + PL    P+++    +   TQ+N K++E   LIKFDFLGLKT
Sbjct: 530  EGLNRNAGTHAAGVVISNEPLWNKTPLFKPSGMETLATQYNGKYVEDVDLIKFDFLGLKT 589

Query: 579  LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT+++++   + QR   +V+   +  +D   Y L+ T  T+G+FQ+ES GM+   + ++P
Sbjct: 590  LTVIEEANKLIEQRHGKRVNFLTVDVNDKGVYDLIQTGNTIGLFQIESDGMQDLCKRLKP 649

Query: 638  DCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIY 691
               EDIIA+++LYRPGP+++ +   + +RK+G+E+I   +      + P+L+ T GVI+Y
Sbjct: 650  SNFEDIIAVLALYRPGPMESGMLDDFIDRKHGREEINYFYDEFDAPLRPILETTYGVIVY 709

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVMQI Q + G+SL  AD++RRAMGKKIKEEMD+ K  F  G  K G  K     +F+
Sbjct: 710  QEQVMQIVQTIGGFSLGGADLVRRAMGKKIKEEMDRLKGEFAIGGVKKGFVKEHCEELFD 769

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            L+ KFA YGFNKSH+AAYA++++ T+++K +YP EF+AA +TLE DN +K+ K+  + ++
Sbjct: 770  LIVKFAGYGFNKSHSAAYALVTFYTSYLKKYYPSEFMAALLTLEKDNTDKVVKYVDEVKR 829

Query: 812  FNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLE 866
              + + PP +N   + F      G   + + + AIKG G    + I++    +  F+   
Sbjct: 830  LKLDLFPPDINKSDLVFAPKKIDGQEVVMFGMGAIKGAGDVAIKSILKERNENGNFEDFA 889

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF SRVD  K+N+RV ESL  AG  D FGYSR  +L+ ++ I +        +     ++
Sbjct: 890  DFISRVDGSKVNKRVFESLAKAGGFDTFGYSRRSILEQIETINETVGKAMAAKKMATGSL 949

Query: 927  FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            F   K     ++ LEKF         E E++ LGFY SGHPLD Y+  L  +      E 
Sbjct: 950  FGDSKELTKVEVQLEKFEEYELKELLELEKQSLGFYVSGHPLDEYREQLDGINYTLSSEL 1009

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 G+       V +  ++ ++KG++   +   +     E   F
Sbjct: 1010 EDLGDGSEALFIGKVETINERISKKGNKFAILNLMDLHGNIELMLF 1055


>gi|254488409|ref|ZP_05101614.1| DNA polymerase III, alpha subunit subfamily, putative [Roseobacter
            sp. GAI101]
 gi|214045278|gb|EEB85916.1| DNA polymerase III, alpha subunit subfamily, putative [Roseobacter
            sp. GAI101]
          Length = 1177

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 489/1068 (45%), Positives = 680/1068 (63%), Gaps = 58/1068 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F+HL+ HS YSLLEGAL L  + D   +   PA+A+TDTNN+F+ALEFS     
Sbjct: 1    MAHTPRFIHLRTHSEYSLLEGALRLKKLPDLCKSAGMPAMALTDTNNMFAALEFSIAMSG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPIIGCQ+D+           G+ P    P +VLL  +  GY+ L++L S +Y+ D+
Sbjct: 61   AGVQPIIGCQVDLAY----VQAQPGEKPRLPAP-VVLLAQSEPGYENLMKLNSCLYI-DK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     + L  L+ + + G+I LTGG+ GP+ +      +  AE  +      FGDRLYV
Sbjct: 115  GGALPEVTLDQLESL-SAGIICLTGGAGGPVGQLLQTGQAPAAEALMKRLHGAFGDRLYV 173

Query: 185  NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       +R  E   V++AY   +PLVATN+  F     YEAHD L+ +A   
Sbjct: 174  ELQRHPGENGQPEAERLTERGFVEMAYAMGIPLVATNDVYFPKTSMYEAHDALICIADGA 233

Query: 239  V-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                Q+DR R+T  HY K++SEMV++F+DLPEA++NTVEIA+RC+F+            +
Sbjct: 234  YVDQQQDRRRLTAQHYFKSQSEMVTLFADLPEAIDNTVEIAKRCAFMAY--------RRD 285

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    +E  EL+ +A  GL+ RL    I      +DY +RLDFEL +I  M F GYF
Sbjct: 286  PILPKFADDEIEELKRQAHEGLKNRLK--VIPHATSVEDYEKRLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK ++IPVGPGRGSGAGS+ AYALTITD+DPLR+ LLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKDHDIPVGPGRGSGAGSLVAYALTITDLDPLRYQLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVI+YVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIQYVQRKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS++  +AD+ R R+    +  V RLL+  Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALADEPRLRDEARNEEVVARLLDYGQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D +   G  +
Sbjct: 524  RPLDRLVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDQIKSSGRHL 583

Query: 597  D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                               ++ IP DD  +Y L  +  T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  HIAADGTELFAPPEGLIDDIATIPLDDEASYKLYASAKTVAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG ++  S+HP ID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPTYCEVKNGIKERESVHPSIDHILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKI EEM K++ +F  GA  NG+ K  A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAMANGVDKKKASEVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ R +  +  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKRLELPWV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA----DKPFDSLEDFCSRVD 873
            PP VN     FKV +  + Y+L A+K VG    + I +       D+PF +L D   RVD
Sbjct: 824  PPCVNRSDAMFKVVEGALVYALGALKNVGVEAMKLITQGRKIEGVDRPFATLFDLARRVD 883

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             K++ +R LE L  +GA D    +R ++  +LD +  Y+  + + + +   ++F  E G 
Sbjct: 884  LKRVGKRPLEMLARSGAFDQLDNNRRRVWNALDGLVSYSAAIHEQKASNQVSLFG-EAGD 942

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG------IKGYEESV 987
               +  +       ++ R   E + +GFY SGHPLD Y   +++            +E  
Sbjct: 943  DLPEPRILPCDDWEAAERLTEEFKAVGFYLSGHPLDDYMGPMKRKSASGGVPFLTLDELT 1002

Query: 988  ATIRGN---NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +      N RLA +V  +Q++K+ +G+R  +   S+P   YE   F
Sbjct: 1003 EKVSIKGAMNARLAGVVAGRQERKSARGNRFAFAQLSDPTGAYEVTLF 1050


>gi|254448006|ref|ZP_05061470.1| DNA polymerase III, alpha subunit [gamma proteobacterium HTCC5015]
 gi|198262432|gb|EDY86713.1| DNA polymerase III, alpha subunit [gamma proteobacterium HTCC5015]
          Length = 1175

 Score =  750 bits (1936), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/1060 (40%), Positives = 614/1060 (57%), Gaps = 52/1060 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL++H+ YSL++  + +  ++   A    PA+A+TD  NLF+ ++F   A AAGI
Sbjct: 2    SSSFVHLRLHTEYSLVDSVVRIKPLISTAAEQGMPALALTDQCNLFAMVKFFGAASAAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + + G  L +  +D          P      ++LL     GY+ L ELVS+ Y   Q   
Sbjct: 62   KALFGADLLVRNED----------PKKPSTVLLLLAMDDVGYRNLTELVSQAYTEGQAGG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I  +WL E  TEGLI L+GG  G I RA  FN  +     L  +K+ F +R Y+ LQ
Sbjct: 112  LPVIERTWL-EGRTEGLIALSGGPWGDIGRAIAFNHHEQIPPLLAFYKQHFPNRFYLELQ 170

Query: 188  RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R     +       V LA  H+LP+VATN+  F+  +D+++H+V + +    ++    R 
Sbjct: 171  RTGREGEALYNETAVSLAAEHQLPVVATNDVRFIHADDFDSHEVRVCIHEGRLLDDPRRS 230

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  +P+ YL++  EMV +FSDLPEA+ENT+EIA+RC+    +    LP +   + + I  
Sbjct: 231  RHYSPEQYLRSPEEMVELFSDLPEAIENTLEIAKRCNVAPHMGEYFLPDYPVPDGETI-- 288

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQD-----YRQRLDFELNVIARMKFSGYFLIV 360
              ++  R ++  GLE R+ +     G    +     YR RL+ E+ VI  M F GYFLIV
Sbjct: 289  --DSFFRKQSQEGLEWRMEKLQRDTGTTWDEAKVQSYRDRLEREIGVILNMGFPGYFLIV 346

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFIQWAK N +PVGPGRGSGAGS+ AYAL ITD+DP+ + LLFERFLNP+R+SMPDFD+
Sbjct: 347  ADFIQWAKNNGVPVGPGRGSGAGSLVAYALKITDLDPIEYDLLFERFLNPERVSMPDFDV 406

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC + RD VI YV  KYG ++V+QIIT+GS+ AKA +RDVGR L   Y  VD + KLIP
Sbjct: 407  DFCMEGRDRVIDYVAQKYGRDQVSQIITYGSMAAKAVVRDVGRVLGHGYGFVDGIAKLIP 466

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +    +S QA+ +    ++    D  V  LL+++ KLEGL R+A  HA G+VI    L+
Sbjct: 467  MEVGITLS-QALEESEELKQRYEEDEEVTNLLDMALKLEGLSRNAGKHAGGVVIAPSKLT 525

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVK 595
               P+Y +      VTQF+   +E  GL+KFDFLGL+TLT++  +L  +  R        
Sbjct: 526  DFTPLYCEEGGGGLVTQFDKDDVEAIGLVKFDFLGLRTLTIINWALKEINSRLEAAGHPL 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D+  IP DD  T+ LL  + T  +FQLESSGM+  ++ +QPD  EDI+ALV+L+RPGP+
Sbjct: 586  LDIDAIPLDDAPTFDLLKAQQTTAVFQLESSGMKNLIKKLQPDSFEDIVALVALFRPGPL 645

Query: 656  DNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            D+ +   +  RK+G++++   HP      + P+L+ T G+I+YQEQVMQIAQ++ GYSL 
Sbjct: 646  DSGMVDDFIRRKHGQDEVSYPHPDYQYDGLKPVLEPTYGIILYQEQVMQIAQVMGGYSLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQKE F+ G   NGI  ++A NIF+L+ KFA YGFNKSH+AA
Sbjct: 706  GADLLRRAMGKKKLEEMAKQKEVFLKGCGDNGIDLSLAENIFDLVEKFAGYGFNKSHSAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQTAW+K HYP  F+AA ++ + DN +K+    ++ R   + I+PP VN+    F
Sbjct: 766  YALVSYQTAWLKAHYPSAFMAAVLSADSDNTDKVVNLIEECRNMGLTILPPDVNSSAYKF 825

Query: 829  KVGDNR-IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             + D++ I Y L A+KGVG      I E   A+  +  L DFC R+D +KLNRRV E+L+
Sbjct: 826  TMQDDKTIRYGLGALKGVGQGVIEAINEEREANGDYADLLDFCRRIDGRKLNRRVTEALI 885

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFSV 945
              GALD  G +R  L+ +L +    A   +KN+     +IF     +     + +     
Sbjct: 886  RGGALDSIGPNRASLMAALGDALMAASQHQKNQATGQVDIFGALDHSNEMASVDVPLIKE 945

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN----------- 994
             +   +   E+ VLG Y +GHP + +   L  +  K     V  +               
Sbjct: 946  WHEDDKLRAERDVLGLYLTGHPFNRFARELSAITHKNLHSHVEAVEAQESASRGDDFRAR 1005

Query: 995  ---IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                 +A +VV  Q K+   G+ +  VT  +     +   
Sbjct: 1006 AISATVAGLVVDVQSKRFGNGNELLIVTLDDRTDRVDLTL 1045


>gi|284991667|ref|YP_003410221.1| DNA polymerase III subunit alpha [Geodermatophilus obscurus DSM
            43160]
 gi|284064912|gb|ADB75850.1| DNA polymerase III, alpha subunit [Geodermatophilus obscurus DSM
            43160]
          Length = 1185

 Score =  750 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1072 (34%), Positives = 558/1072 (52%), Gaps = 56/1072 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              S SFVHL VH+ YS+L+GA  L  +    A    PA+A+TD  N+F A +F ++A AA
Sbjct: 4    PSSDSFVHLHVHTEYSMLDGAAKLPEVTKAAAEQGMPALAMTDHGNVFGAYDFYKQAKAA 63

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQG--------------KTPFPTVPSIVLLVSTAEGYQR 111
            G++PIIG +                                      + LL  T EG   
Sbjct: 64   GVKPIIGMEGYYTPGSRFDRAPFDFGENLIDEDGEGGSSRGKAAYTHMTLLARTTEGMHN 123

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L  + S   L  Q  +  R     L+  GT GLI  TG  SG ++          A +  
Sbjct: 124  LFRISSMASLEGQ-YRKPRFDRDLLERYGT-GLIATTGCPSGEVNMWLRAGKHDRARQAA 181

Query: 172  LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
              F+ +FG +  Y  +  H    ++     ++++A    +PL+ TN+  +   ED EAHD
Sbjct: 182  ADFQDIFGKENFYAEVMDHGLAIEKKTRPALLEIAKELGIPLLGTNDLHYTHREDAEAHD 241

Query: 230  VLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             L+ +   + +++ +R +   D +YLK+ +EM ++FS+LPEA +NT+ +A +C       
Sbjct: 242  ALLCIQTGSRLNETNRFKFNGDGYYLKSAAEMRALFSELPEACDNTLLVAEQCEVEFTEG 301

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
            A ++PRF     +D    E +    +   GL  R   G           R++ D+E+ +I
Sbjct: 302  ADLMPRFPLPPGED----ETSWFIKEVERGLHKRWPGG------IPDHVRKQADYEVGII 351

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DPL   L+FERFL
Sbjct: 352  TQMGFPGYFLVVADFINWAKDNGIRVGPGRGSAAGSLAAYAMGITDLDPLAHGLIFERFL 411

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF   RR EVI+YV  KYG ERV+QI+T+G+++AKAA++D  R L  P
Sbjct: 412  NPERVSMPDVDIDFDDRRRGEVIQYVSQKYGEERVSQIVTYGTIKAKAAIKDAARVLDRP 471

Query: 469  YSQVDRLCKLIPND---PAHPVS------LQAIADDSRFREARLADPSVDRLLEISQKLE 519
            YS  D L KL+P D      P+S           + + FR    +DP    +++ ++KLE
Sbjct: 472  YSVGDELTKLMPPDVMGKGIPLSGVFDPAHPRYKEAAEFRARYESDPGAAEVVDQARKLE 531

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HAAG++IG  PL   +P+ R       +TQF+    E  GL+K DFLGL+ L
Sbjct: 532  GLKRQWGVHAAGVIIGRYPLIDSIPIMRREADGAVITQFDYPTCETLGLLKMDFLGLRNL 591

Query: 580  TLLQKSLDF---LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            T++  +L       +  + +D       D  TY LL+   TLG+FQ +   MR  L  M+
Sbjct: 592  TVIDDALRNIVANGKEPIDLDEISKDLTDPATYALLSRGDTLGVFQFDGGPMRSLLRLMR 651

Query: 637  PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVII 690
            PD  EDI A+ +LYRPGP+  ++   Y  RKNG+++I  IHP +   L++    T G+I+
Sbjct: 652  PDNFEDISAVGALYRPGPMGANSHTNYALRKNGQQEITPIHPELAEPLEDILGTTYGLIV 711

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVM IAQ ++GYSL +AD+LRRAMGKK K  +D +   F +G  + G S      ++
Sbjct: 712  YQEQVMAIAQKVAGYSLGKADLLRRAMGKKKKSVLDAEFVGFEAGMKERGFSDAAIKTLW 771

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            ++L  FADY FNK+H+AAY ++SY TA++K +YP E++A  +T   D+ ++   +  + R
Sbjct: 772  DILVPFADYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDRRPIYLAECR 831

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFC 869
            +  I+++PP VN    DF      I + LA+++ VG      I  A  +   F    DF 
Sbjct: 832  RMGIKVLPPDVNESSWDFTAVGTDIRFGLASVRNVGHNVVDSIRRAREEKGAFKDFADFM 891

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             ++D+   N++V+ESL  AGA D  G+SR  ++         A  +++       ++F  
Sbjct: 892  RKIDTVACNKKVIESLAKAGAFDSLGHSRQGIVAVHAQAVDSAMALKRREAEGQFDLFGS 951

Query: 930  EKGTFSDKI------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                 +D             +  + S R   E+ +LG Y S HPL   + +L        
Sbjct: 952  FGDEGADDPFSGALDIAIPTADWSKSERLVFERDMLGLYVSDHPLHGVEHVLAANADTPI 1011

Query: 984  EESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             E  A     G N+ +A ++ S   +  ++G+     T  +     E  FFP
Sbjct: 1012 AEINAGGVEDGANVTIAGILTSVAPRTNKQGAPWAIATLEDLESGIEVLFFP 1063


>gi|110834019|ref|YP_692878.1| DNA polymerase III subunit alpha [Alcanivorax borkumensis SK2]
 gi|110647130|emb|CAL16606.1| DNA polymerase III, alpha subunit [Alcanivorax borkumensis SK2]
          Length = 1166

 Score =  750 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1055 (39%), Positives = 607/1055 (57%), Gaps = 41/1055 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL++H+ YSL++G + +  +      +Q PA+A+TD +NLF+ ++F Q A  
Sbjct: 1    MTD-PRFVHLRLHTDYSLVDGIVRVKELTKTCVNEQIPAVAVTDDSNLFALIKFYQNAMN 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+P++G  L +             T       +  LV    GYQ L  L+SR +  +Q
Sbjct: 60   AGIKPLMGADLWV-----------QGTHIDEPAYLSFLVLNEVGYQNLTLLISRAWQTNQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +   WL E+  EGLI+L+  S G + +       + A++        +GDR Y+
Sbjct: 109  DRGRALVKPEWLAEL-NEGLIVLSAASQGEVGQLLLAGKHEQAQQYARWLVSTYGDRFYL 167

Query: 185  NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR  R  D       V LA    LP+VATN+  FL  ED+EAH+  + +     +   
Sbjct: 168  EVQRTSRPGDEDCLHASVALAEQLGLPVVATNDVRFLRREDFEAHESRVCIHDGNTLDDP 227

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  + + YLK+  EM  +FSDLPEALENTVEIARRC+  +++    LP F   E   
Sbjct: 228  RRPKKYSEEQYLKSADEMAQLFSDLPEALENTVEIARRCTLDIRLGENFLPDFPIPEGMT 287

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            I++  E    +     L+V L           +DY  RL FEL++I +M F GYFLIVAD
Sbjct: 288  IEQYFEKVSHDGLEERLKVLLDSDDPEYALKRKDYDDRLRFELDIINQMGFPGYFLIVAD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AYAL ITD+DP+ + LLFERFLNP+R+SMPDFD+DF
Sbjct: 348  FIQWAKDNEVPVGPGRGSGAGSLVAYALKITDLDPIGYDLLFERFLNPERVSMPDFDVDF 407

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C ++RD VI YV +KYG + V+QIITFG++ AKA +RDV R    PY   DRL K+IP  
Sbjct: 408  CMEKRDRVINYVADKYGRDAVSQIITFGTMAAKAVVRDVARVQGKPYGLADRLSKMIPGV 467

Query: 483  PAHPVSLQAIADDSRFREARLADPSV-----DRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            P   +S +A+  +   RE   +D +      + ++E++ KLEGL R+   HA G+VI   
Sbjct: 468  PGMTLS-KALEQEETLREFLESDENSDKEAANEIMEMAFKLEGLTRNVGKHAGGVVIAPG 526

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS-----LDFLAQR 592
             L+   P+Y +      VTQ++   +E AGL+KFDFLGLKTLT++  +     +    + 
Sbjct: 527  KLTDFAPLYCEEDGTNLVTQYDKDDVESAGLVKFDFLGLKTLTIIDWAVKAANVKRAREG 586

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               + +  IP DD  ++ LL    T  +FQLES GM++ ++ ++PD  EDIIALV+LYRP
Sbjct: 587  LDDLVIDHIPLDDSPSFDLLKRGDTTAVFQLESQGMKELIKKLKPDVFEDIIALVALYRP 646

Query: 653  GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+++ +V N                   H  ++P+LK + GVI+YQEQVMQIAQ L+GY
Sbjct: 647  GPLESGMVDNFVNRKHGREPLAYPDPQYQHEWLEPILKPSYGVILYQEQVMQIAQELAGY 706

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM+KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH
Sbjct: 707  TLGGADMLRRAMGKKKPEEMEKQRAIFEEGAKGKGVDAGLAMKIFDLVEKFAGYGFNKSH 766

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAYA+++YQTAW+K HYP EF+AA+++ +M N +K+  F  + +   +Q++PP VN+  
Sbjct: 767  SAAYALVAYQTAWLKVHYPAEFMAATISADMQNTDKVVTFIDECKTMGLQVLPPDVNSCG 826

Query: 826  VDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLE 883
              F V  +  I Y L AIKG+G      I+ A A+   F  L DFC R+D KK+NRR LE
Sbjct: 827  YRFTVNPEGDIVYGLGAIKGLGEGPIEAIVTARAEGGEFKDLFDFCRRIDLKKINRRSLE 886

Query: 884  SLVFAGALDCFGYS-----RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            ++V AG LD  G +     R QLL +L +    A    +N      ++F     + +  +
Sbjct: 887  AMVRAGVLDKLGLNSSFHDRAQLLATLPDAIAAADQDARNEAAGIMDMFGAMDDSPATAV 946

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
              +     N   R   E+  LG + +GHP+D Y+  +++           T +G    +A
Sbjct: 947  EWKPARSWNDETRLNGERDTLGLFLTGHPIDQYEKEVQQFVTARINALQPTAKGEAATVA 1006

Query: 999  AMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
             +VV+ +  ++++ G R+ ++T  +     E + F
Sbjct: 1007 GLVVALRITRSKRSGERMAFITLDDKTGRVEVSVF 1041


>gi|269837330|ref|YP_003319558.1| DNA polymerase III, alpha subunit [Sphaerobacter thermophilus DSM
            20745]
 gi|269786593|gb|ACZ38736.1| DNA polymerase III, alpha subunit [Sphaerobacter thermophilus DSM
            20745]
          Length = 1167

 Score =  750 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1050 (34%), Positives = 555/1050 (52%), Gaps = 45/1050 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F HL +H+ +SLL+G   + + + +        IAITD   ++  +++ + A A
Sbjct: 1    MTARP-FAHLHLHTEFSLLDGMGRIKDYMARAREFGMEHIAITDHGVMYGVIDWYKAARA 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              + PI+G +  +          Q          ++LL     GY+ L+ L SR  L + 
Sbjct: 60   HDLHPILGIEAYLAPGSIEDREKQS-------YHLLLLAENERGYRNLLRLASRASL-EG 111

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 R+ L  L  +  +G+I  +    GP+   F     + A +     K++FG D  Y
Sbjct: 112  FYYKPRVDLDMLNSL-RDGIICTSACLGGPVANNFLQGRDEEAVRLAGILKEMFGPDHFY 170

Query: 184  VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H     R    Q+++LA   +LPLVATN+  ++ + D    ++L+ +  +T +  
Sbjct: 171  IEIQDHGIEGQRQTNPQLIELARKLDLPLVATNDVHYVDKSDAPLQELLVCIQTNTTLHD 230

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              R R+ +   Y K+  EM  +F ++PEALENT+ IA RC+  L+     LP     E  
Sbjct: 231  PKRLRMESDQLYFKSPEEMWRLFGEVPEALENTIRIAERCNVDLEFGRLHLPDPGIPEGM 290

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                     L      G+  R  +         ++ R+RL++EL+VI    FS Y LIV 
Sbjct: 291  ----TPHEYLCQLCWDGVRRRYPE-------VTEEVRRRLEYELDVIQETGFSSYMLIVR 339

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DF ++A++  I  G  RGS A S+  Y L ITDIDPL   L+FERFLN +R  MPD D+D
Sbjct: 340  DFAEFARQRRISFG-VRGSAAASIVLYTLGITDIDPLANRLVFERFLNRERREMPDIDMD 398

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR EVI YV +KYGH+RVAQIITFG++ AKAA+RD GRA+   Y+ VDR+ +LIP+
Sbjct: 399  FADNRRAEVIDYVASKYGHDRVAQIITFGTMGAKAAIRDTGRAMGWAYNDVDRIARLIPS 458

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +  +A+ +    R+    DP+   L++ +++LEG+ RHA THAAG+VI   PL +
Sbjct: 459  TLNITLD-KALQESPELRQLYETDPACRELIDNAKRLEGISRHAGTHAAGVVIAADPLVE 517

Query: 542  LVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597
             +P+ R  R++    P TQF M+ + + GL+K DFLGL  LT+L ++++ + Q   V++D
Sbjct: 518  HLPLQRPARAEEGALPTTQFPMETVAEIGLLKMDFLGLANLTILGEAVELIRQTTGVEID 577

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               IP  D +TY +L+   T G+FQLES+GMR+ +  ++P  I ++ A+V+LYRPGP+ +
Sbjct: 578  PKKIPDGDEKTYAMLSQGETFGVFQLESAGMRRYIRELRPSSIAELAAMVALYRPGPMQH 637

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y   K+G E I   HP +  +L ET GVI+YQ+QV+ IA+  +GY+L EAD++R+AM
Sbjct: 638  IPTYCRAKHGLEPIRYPHPDLAEILDETYGVIVYQDQVLLIARKFAGYTLGEADIMRKAM 697

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKKI E M  ++ERF+ GA + G S   A N+F L+  FA Y FNK+HA  YA ISYQT+
Sbjct: 698  GKKIPEVMKAERERFLRGAQEKGYSAEDAQNVFNLIEPFAGYAFNKAHAVCYATISYQTS 757

Query: 778  WMKTHYPVEFLAASM----TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-- 831
            ++K +YP E++ A +    +      +++     + ++  I ++PP +N   VDF++   
Sbjct: 758  YLKANYPAEYMTAVLRGAPSHPSGATQRVAAAVAECQKLGIPVLPPDINKSGVDFEIEIL 817

Query: 832  ---DNRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSRVDSKKLNRRVLESL 885
                  I + LA +K VG      I+ A    P   F+S E FC  VD   +NRRV ESL
Sbjct: 818  EDGTKAIRFGLAIVKNVGEAAVESIVAARKSLPGERFESFEQFCDTVDWTVVNRRVAESL 877

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT--LEKF 943
            +  GALD  G  R  LL  L+     AQ  ++       ++F+              +  
Sbjct: 878  IKCGALDSLG-DRATLLAVLEQAISAAQSRQRAAKRGQIDLFSAAPVAAPALALAMPDDV 936

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                 +     E+ +LG Y S HPL+   P++R  G     E      G  I    M+  
Sbjct: 937  PEIPRATLLAWEKELLGLYLSSHPLNDLVPLIRDGGYVRLAEIDEETVGQQIEAIVMITG 996

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++  T+    +      +     E   FP
Sbjct: 997  MRKLTTKTNRVMAICQLEDQTGAIEMVVFP 1026


>gi|187734882|ref|YP_001876994.1| DNA polymerase III, alpha subunit [Akkermansia muciniphila ATCC
            BAA-835]
 gi|187424934|gb|ACD04213.1| DNA polymerase III, alpha subunit [Akkermansia muciniphila ATCC
            BAA-835]
          Length = 1174

 Score =  750 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1056 (37%), Positives = 578/1056 (54%), Gaps = 44/1056 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF---------SQ 60
            SFVHL  H+ YSLL+GA+ + +++ + +    PA+A+TD  NLF A+E          S 
Sbjct: 4    SFVHLHNHTEYSLLDGAVHIKDLIAECSRMGMPAVAVTDHGNLFGAIELVMETNSLNKSV 63

Query: 61   KA---------CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
             A             ++PI GC++ +                     ++LL     G+Q 
Sbjct: 64   AAWNKEHPEGPQKQEVKPIFGCEVYLSPTPISVKKQLPGRR--KYTHLLLLAENETGWQN 121

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L++LVSR +L +      R+ +  L+E   EGLI  T   +GP++     +  + AE+ L
Sbjct: 122  LVKLVSRSHL-EGFYYKPRVDMETLREFH-EGLICCTACIAGPLNEWLLNDQPEKAEEAL 179

Query: 172  LTFKKLFGD-RLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            L  K +FGD  ++V LQ H   ++ +   ++V++A     P+VATN+  FL +ED++ HD
Sbjct: 180  LALKDIFGDDNIFVELQDHGMEEQKKCLPELVRIARKTNTPIVATNDVHFLRKEDHDMHD 239

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
            VL+ +  +  ++   R R + + YLK+  EM  +F D PEA+ENT++IA RC+  +++ +
Sbjct: 240  VLICIGTNEKLASPKRMRYSTEVYLKSPEEMREVFKDYPEAVENTLKIAERCNVAIKLDS 299

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                ++ E          E  LR     GLE R  +  +A     ++ R RLD+EL +I 
Sbjct: 300  TSTEKYPE-FGTPDGSSREEYLRKVCYKGLEERYGKERVAAD---KELRDRLDYELGIIN 355

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            ++KF  YFLI ADFI WAK ++IPVGPGRGS AGS+ AYA+ IT+IDPLRF L+FERFLN
Sbjct: 356  QLKFPSYFLITADFINWAKDHDIPVGPGRGSAAGSLVAYAMKITNIDPLRFGLIFERFLN 415

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+S PD DIDFCQ RR EVI YV+ KYG   V+ IIT+G++ AK+ LRDV R + M Y
Sbjct: 416  PERVSPPDIDIDFCQTRRPEVIDYVRQKYGERAVSHIITYGTMGAKSVLRDVARVMDMSY 475

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            +  DR+ KLI   P   +   +   +   RE   +D     L   + +LEGL R+   HA
Sbjct: 476  ADGDRISKLIETGPKVTL-QSSYKSNEELRELIASDEGYAELWGYATRLEGLIRNVGVHA 534

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            AG+VIGDRPL + V + RD  SD     V Q +M  I + GL+K DFLGLKTLT++  + 
Sbjct: 535  AGVVIGDRPLDEHVALTRDDLSDPHAAVVAQCDMSAIYEVGLLKMDFLGLKTLTVMHDAE 594

Query: 587  DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             +   R  +  L  +P DD ET  LL    T+G+FQLES GM           IEDII L
Sbjct: 595  QYARWRVPEFKLDSVPLDDRETLDLLNRGDTMGVFQLESGGMVDTCRRYGIQKIEDIIDL 654

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            ++LYRPG +  +      K G  ++   HPL++ +  ET GV+IYQEQV   A+LL+GY+
Sbjct: 655  LALYRPGAMQFMDEMIEVKKGLRQVEYEHPLLEQVSGETYGVMIYQEQVQAAAKLLAGYT 714

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI-SKTIAVNIFELLAKFADYGFNKSH 765
            L  AD+LRRAMGKK   +M K+K  F+ G  K     +  A  IF+ + KFA YGFNKSH
Sbjct: 715  LGGADLLRRAMGKKDPAKMAKEKAHFVEGCWKTNQIDEKTATAIFDKIEKFAGYGFNKSH 774

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +A Y  ISY TA++K H+PVEFL   M+ E +N +KI  F Q+A +  I+I+PP VN   
Sbjct: 775  SACYGHISYWTAYLKAHFPVEFLCGLMSNEANN-DKIGVFIQEANRMGIEILPPDVNKSM 833

Query: 826  VDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNR 879
            + F           + Y LAAIK VG    + ++E    +  F S+ED C+R+DSK +N+
Sbjct: 834  LKFTPEKMPSGKLAVRYGLAAIKNVGEGAMQILLEEREKNGEFSSMEDICNRLDSKSVNK 893

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            ++LESL+ AGALD     R  L + +D     A  V K++     ++F         K  
Sbjct: 894  KILESLIRAGALDWTLEPRCVLFERVDLALSGASQVHKDKALGQGSLFDMTFEAPRVKDE 953

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG---YEESVATIRGNNIR 996
                   +   R  +E+ +LG YF GHPLD  + ++           +           +
Sbjct: 954  -PAVPEWSKEQRMGDEKDLLGAYFCGHPLDSMRGVIDAEKYTRIGLIDTLEPHELKQKHQ 1012

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +A MV S   K ++ G +   +T  +     E   +
Sbjct: 1013 IAGMVRSVTPKISKAGRKFAILTLEDFTGSIEVLLW 1048


>gi|307729084|ref|YP_003906308.1| DNA polymerase III subunit alpha [Burkholderia sp. CCGE1003]
 gi|307583619|gb|ADN57017.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1003]
          Length = 1199

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/1046 (38%), Positives = 606/1046 (57%), Gaps = 39/1046 (3%)

Query: 5    LE--KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            +     P FVHL++HS +S+ +G + L++++   A D Q A+A+TD  N F  + F ++A
Sbjct: 1    MSPMSDPRFVHLRLHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEA 60

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               G++PI GC + I   D+                ++LLV    GY  L EL+S+  L 
Sbjct: 61   RGKGVKPIAGCDVWITNPDDRDKP----------SRLLLLVKDRRGYLNLCELLSKASLT 110

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +Q +    +   WL+    EGL+ L+G   G +  A    + + A++  L + K+F    
Sbjct: 111  NQYRGRAEVEAGWLESGLGEGLLALSGAQQGDVGLALAAGNQEAAKRNALHWAKVFPGGF 170

Query: 183  YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ LQR  +        Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++
Sbjct: 171  YIELQRCGQPGGEQYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILA 230

Query: 242  QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               R  R TP+ Y + + EMV++F+D+P AL N+VEIA+RC+  L++  P LP F   + 
Sbjct: 231  NPRRQKRFTPEQYFRTQDEMVALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDG 290

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYF 357
              +    ++ L + +  GLE RLAQ    +       + Y QRL+FE   + +M F GYF
Sbjct: 291  MSL----DDYLVHLSKQGLETRLAQLYPDEAERAAQRETYYQRLEFECGTVIKMGFPGYF 346

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPD
Sbjct: 347  LIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPD 406

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + K
Sbjct: 407  FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAK 466

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP  P   V++   + ++   +E    +  V +LLE++Q++EG+ R+   HA G++I  
Sbjct: 467  LIPFKPGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGITRNVGMHAGGVLIAP 526

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593
              L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +     
Sbjct: 527  GKLTDFCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 586

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPG
Sbjct: 587  KDWSLAQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPG 646

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  +  RK+G+E +    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+L
Sbjct: 647  PMDLIPSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 706

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  EEM + +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++
Sbjct: 707  RRAMGKKKPEEMAQHRELFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLA 766

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            Y TAW+K H+P EF+AA+M+L MD+ EK+K   +D     + ++PP +N     F+    
Sbjct: 767  YYTAWLKAHHPAEFMAANMSLAMDDTEKVKILFEDCIANKMTVLPPDINLSAYRFEPVAE 826

Query: 834  R-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                    I Y L AIKG G      I+ A  D  F  + DFC+R+D + +NRR +E+L+
Sbjct: 827  ADGKRSRTIRYGLGAIKGSGQNAIEEILRAREDGAFIDIFDFCNRIDRRVVNRRTVEALI 886

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AGA D    +R QL+ S+    + A+    N       +F       S    L      
Sbjct: 887  RAGAFDSLHANRAQLIASVSLAMEAAEQASANAL--QAGLF-DMGDAPSQGHELVDEPEW 943

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                + + E+  LGFY SGH  D Y+  +R+   +   E           +A +V S + 
Sbjct: 944  PEKKKLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKIGELKEGRDK---LVAGIVASLRT 1000

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + T++G  +      +   + E   F
Sbjct: 1001 QMTQRGKMM-IALLDDGTGQCEVTVF 1025


>gi|33596339|ref|NP_883982.1| DNA polymerase III subunit alpha [Bordetella parapertussis 12822]
 gi|33602375|ref|NP_889935.1| DNA polymerase III subunit alpha [Bordetella bronchiseptica RB50]
 gi|33566108|emb|CAE37008.1| DNA polymerase III alpha subunit [Bordetella parapertussis]
 gi|33576814|emb|CAE33893.1| DNA polymerase III alpha subunit [Bordetella bronchiseptica RB50]
          Length = 1163

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/1055 (37%), Positives = 603/1055 (57%), Gaps = 45/1055 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +++ +   P FVHL+VHS +S+ +G + +++++ ++A   QPA+A+TD +N+F  ++F +
Sbjct: 1    MSEAVTNPPPFVHLRVHSEFSVSDGIVRISDLIKRVAKLGQPAVALTDLSNIFGLIKFYK 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  AG++P+ G  + +   D+ +              ++LLV   +GY  L EL++R +
Sbjct: 61   GARGAGVKPVAGSDVWLTNDDDREKP----------FRLLLLVRNHQGYLNLCELLTRSF 110

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            L +Q K    +   WLQ  G EGLI+L+G   G + +A    ++  A      + +LF  
Sbjct: 111  LENQYKGRAEVRREWLQ--GQEGLIVLSGARGGDVGQALEAGNAVTALSLARQWGQLFPG 168

Query: 181  RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQR     D       ++LA    LP+VAT+   FL  ++++AH+  + +A   +
Sbjct: 169  SYYIELQRAGFDGDETYTQAAMRLAAEAGLPVVATHPVQFLDRDEFQAHEARVCIAEGEI 228

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R  R T D YL +  EM   F+D+P AL NTVEIARRC+  L +  P LP F   
Sbjct: 229  LANPRRVRRYTQDQYLLSSEEMARRFADVPSALANTVEIARRCNLTLVLGKPRLPNFPTP 288

Query: 299  ECDDIQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +        ++ L   +  GLE     L      +      Y +RL +E   I +M F G
Sbjct: 289  DGV----TLDDYLVQLSEEGLEKRLQFLFPDEAERNAKRDQYYERLRWECKTIIQMGFPG 344

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLNP+R+SM
Sbjct: 345  YFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSM 404

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQD R+ VI YV+ KYG E V+QI TFG+L AKA +RD GR L MPY   D L
Sbjct: 405  PDFDIDFCQDNRERVIDYVKMKYGREAVSQIATFGTLGAKAVVRDAGRVLDMPYLFCDAL 464

Query: 476  CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP +PA P +  + + D+  F++    +  V  L+++++ LEGL R    HA G++I
Sbjct: 465  SKLIPFNPADPWTLERTLKDEPAFKDRYEQEEEVRALVDLARPLEGLTRSIGMHAGGVLI 524

Query: 535  GDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-- 591
                L+   P+Y    + +  V+QF+   +E AGL+KFDFLGL+ LT+L  ++ F+ Q  
Sbjct: 525  APGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRFVRQFN 584

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  D+  +  DD   Y +L    T  +FQLES GM++ L+ ++P   EDIIA+++LY
Sbjct: 585  ADKRDFDVMALSLDDQAAYKVLCDANTTAVFQLESRGMKELLKKLRPSTFEDIIAMLALY 644

Query: 651  RPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+++ +   + NRK+G+  +   HP ++  L+ T GVI+YQEQVM I+Q++ GYSL 
Sbjct: 645  RPGPLESGMVDDFVNRKHGRAAVDYFHPDLEGTLRSTYGVIVYQEQVMLISQIIGGYSLG 704

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM K +E F  GA + G    +AV +F+L+ KFA YGFNKSH+AA
Sbjct: 705  GADLLRRAMGKKKPEEMAKHRELFEQGAREKGHDPDLAVKLFDLMEKFAGYGFNKSHSAA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+I+YQTAW+K ++P EFLAA+++ +MD+ +K++ F +DA+   ++++PP VN     F
Sbjct: 765  YALIAYQTAWLKAYHPTEFLAATLSSDMDDTDKVQIFVRDAQDNGVEVLPPDVNASGYRF 824

Query: 829  KVGDNR----------IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKL 877
            +   ++          + Y L A+KG G      I+ A     PF +L DFC RV    +
Sbjct: 825  EPVADKHTEQGKPPRTMRYGLGAVKGTGQGAVEEILRARQEGGPFANLFDFCRRVSKHAV 884

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NRR +E+L+ AGA D    +R  +L S+    + A+  +  R+    ++F  + G     
Sbjct: 885  NRRTIEALIKAGAFDTIEPNRAAMLASVGTAMEAAE--QAARSANQSSLFGDDSGDVVAG 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
              L K +  N       E+  LG+YFSGH  D ++  +R++                  +
Sbjct: 943  -ELTKVAPWNLHTTLTEEKTALGYYFSGHLFDAWRDEVRRIVPMQLARLEPQRDLQ--WM 999

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++   +   TR+G  + +    +   + E + F
Sbjct: 1000 CGVLAGVRTMMTRRGK-MVFAVLDDGTAQIEISVF 1033


>gi|300866715|ref|ZP_07111399.1| DNA polymerase III subunit alpha (modular protein) [Oscillatoria sp.
            PCC 6506]
 gi|300335315|emb|CBN56559.1| DNA polymerase III subunit alpha (modular protein) [Oscillatoria sp.
            PCC 6506]
          Length = 1257

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1086 (34%), Positives = 586/1086 (53%), Gaps = 71/1086 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L +HS YSLL+GA  L  ++D+      PAIA+TD   ++ A+E  +      I P
Sbjct: 2    SFVGLHIHSDYSLLDGASQLPPLIDRAVELGMPAIALTDHGVMYGAIELIKVCRNKNITP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD----QG 125
            IIG ++ +   D        K         V+L    +GY+ L++L +  +L        
Sbjct: 62   IIGNEMYVVNGDISVKVKGRKK-----YHQVVLAKNTQGYKNLVKLTTISHLQGMPERGL 116

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L++   EGLI+ +G  +G + R     + + A K    +K LFGD  Y+ 
Sbjct: 117  FARPCINKELLEQYH-EGLIVTSGCRAGEVPRLIDLGNLEEARKVAKWYKDLFGDDYYLE 175

Query: 186  LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V++     + +VATN+S F +  D EAHD L+ +    +V  + 
Sbjct: 176  IQDHGFWEDRIVNIELVKIGKELGIKIVATNDSHFTACSDVEAHDALLCIQTGKLVEDEK 235

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R R +   YLK+  EM  +F D    + ++  +      +  ++ +       I      
Sbjct: 236  RMRYSGTEYLKSAEEMAQLFRDHLPDDVIKEAIANTLEVAGKIKKYEIFDEPRIPTYEIP 295

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                 +  +   A  GL  R    A  +      Y++RL++EL +I  M FS YFL+V D
Sbjct: 296  PDHTADTYVEYVAWQGLLERFK--AKERKEIKPVYKERLEYELKMIQDMGFSTYFLVVWD 353

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I +A++NNIPVGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 354  YIDYARRNNIPVGPGRGSAAGSLVAYAMKITNIDPVHHGLLFERFLNPERKSMPDIDTDF 413

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RRD++I+YV  KYG ERVAQIITF  L +K+ L+DV R L +PY + D + KLIP  
Sbjct: 414  CIERRDDMIKYVTEKYGAERVAQIITFNRLTSKSVLKDVARVLGVPYKRADEMAKLIPVS 473

Query: 483  PAHPVSLQAIADD----SRFREARLADPSV--------------DRLLEISQKLEGLYRH 524
               P  L  +  +      FR+A   +                  + L+++ ++EG  + 
Sbjct: 474  RGKPEKLAVMISEQTPAPEFRQAYEEETLQAKNNDGTEEKTIAVRQWLDMAIRIEGTNKT 533

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HAAG+VI  +PL ++VP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT+LQK
Sbjct: 534  YGVHAAGVVISAQPLDEIVPLQRN-NEGAVITQYYMEDLESLGLLKMDFLGLKNLTMLQK 592

Query: 585  SLDFLAQRGVKVDLSLIPFDD-------------------HETYHLLTTKGTLGIFQLES 625
            +++++ Q         +   D                    +TY LL      GIFQLES
Sbjct: 593  TVEYIKQTRDCDIDPEMLPSDIERKAQEAFVTCKKLPEDVSKTYKLLAKGDLEGIFQLES 652

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK 683
            SGM   ++ ++P C+EDI ++++LYRPGP+D   I  + +RK+G+E +   HPL++P+LK
Sbjct: 653  SGMLDVVKKLKPSCLEDISSILALYRPGPLDAGLIPQFIDRKHGRELVEYDHPLLEPILK 712

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G + +QEQ+M++AQ L+GYSL +AD+LRRAMGKK  +EM KQ+E FI GA+KNG+S+
Sbjct: 713  ETYGTLCFQEQIMRVAQDLAGYSLGQADLLRRAMGKKKADEMQKQRETFIDGATKNGVSQ 772

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             IA  +FE + +FA+Y FNKSH+ AYA ++YQTA++K +YPVE++AA +T    + +K++
Sbjct: 773  RIAEKLFEQMLQFAEYCFNKSHSMAYAYVTYQTAYLKANYPVEYMAALLTANSGDQDKVQ 832

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKV--------GDNRIYYSLAAIKGVGTTTARHIME 855
            K+  +  +  I+I PP +N   V F            ++I + ++A+K +G +   +I++
Sbjct: 833  KYIANCIKMGIEIEPPDINRSKVTFTPLPKQVTDAEIDKILFGMSAVKNLGDSAIENILK 892

Query: 856  ASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
            A  +   F SL DFC RVD K +N R LE+L+  GALD    +R QL+  LD + K+AQ 
Sbjct: 893  AREEGGNFKSLADFCERVDLKAVNSRALEALIQCGALDRLNSNRNQLMHDLDGVVKWAQD 952

Query: 915  VEKNRTNKHENI-------FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
             +K+R +   N+       F     ++      +     +   +   E+ +LGFY S HP
Sbjct: 953  RKKDRESGQGNLFDLLGMSFGETANSYDSIPKHKPVPDFDKQKKLSLEKELLGFYVSDHP 1012

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L       +        +       + ++L  MV + +   T+K  R+  +   +   + 
Sbjct: 1013 LKSVLLATQNEETVTVAQLADKKGKDVVKLIVMVTAIKLVTTKKNDRMAILQVEDLTGQL 1072

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 1073 EAVVFP 1078


>gi|78067124|ref|YP_369893.1| DNA polymerase III subunit alpha [Burkholderia sp. 383]
 gi|77967869|gb|ABB09249.1| DNA polymerase III, alpha subunit [Burkholderia sp. 383]
          Length = 1176

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1044 (38%), Positives = 607/1044 (58%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + +++I+   AAD Q A+A+TD  N F  + F Q+A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   KGIKPIAGCDVWIANPDDRDKP----------SRLLLLVKDKVGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL    ++GL+ L+G   G I  A    + + A +    + K+F    Y+
Sbjct: 110  YRGRAELDASWLDGELSQGLLALSGAQQGDIGLALAAGNEEAARRHAERWAKVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q   LA   +LP+VAT+ + F++++D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAATLAAALKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T D Y + + +M ++F+DLP A+ NTVE+A+RC+  L++  P LP F   +   
Sbjct: 230  RRQKRFTTDQYFRTQDDMAALFADLPSAIANTVEVAKRCNLKLELGKPKLPLFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GLE RLAQ   A+         Y +RL+FE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSKEGLETRLAQLYPAEAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKAD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WALAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+ NG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAKHREIFAEGAATNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L A+KG G      I+ A  +K F  L DFC R+D + +NRR +E+L+ A
Sbjct: 826  GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R QL+ S+    + A   E N       +F     +      L      + 
Sbjct: 886  GAFDSLNTNRAQLIASVPLAMEAADQAEANAM--QAGLFDMGAES-PHAHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   +           +A ++ S + + 
Sbjct: 943  KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKVGDLKEGRDK---LVAGIIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      + + + E   F
Sbjct: 1000 TQRGK-MLIALLDDGSGQCEITIF 1022


>gi|307261584|ref|ZP_07543252.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 12 str. 1096]
 gi|306868707|gb|EFN00516.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 12 str. 1096]
          Length = 1158

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1048 (39%), Positives = 605/1048 (57%), Gaps = 39/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  +A  
Sbjct: 1    MTQQ-RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +  + + +              + LL     GY  +  L+S+ Y    
Sbjct: 60   SGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAYQQGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              +   +  +WL E+  EG+I+L+GG +G + +A    +   A++ +  +++ F +  Y+
Sbjct: 110  V-EFPLVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENEAEADELVGFYQQYFPNHYYL 167

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  +   
Sbjct: 168  ALCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDP 227

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP + +P  Y ++  EM ++F+DLP+A+ENTV+IA RC+  +++       +       
Sbjct: 228  KRPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGE-----YFLPNFPT 282

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLI
Sbjct: 283  GDLSTEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLI 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 343  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 402

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+ KLI
Sbjct: 403  VDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLI 462

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 463  PPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAI 521

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR       
Sbjct: 522  TDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKE 581

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP
Sbjct: 582  PVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGP 641

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +++ +V       + N +         H  + P+L  T GVI+YQEQVMQIAQ+L+GY+L
Sbjct: 642  LESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTL 701

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 702  GGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+    
Sbjct: 762  AYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSGKHR 821

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR  E L
Sbjct: 822  FSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGL 881

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+++L++  K +    K       ++F     T  + +       
Sbjct: 882  IMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTP 941

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +     E E+  LG Y SGHP+  +   L         E   T RG  + +A +++  
Sbjct: 942  KWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGS 1001

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++GSR+G  T  + + + +   F
Sbjct: 1002 RIAVTKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|170733672|ref|YP_001765619.1| DNA polymerase III subunit alpha [Burkholderia cenocepacia MC0-3]
 gi|169816914|gb|ACA91497.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia MC0-3]
          Length = 1175

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1044 (39%), Positives = 606/1044 (58%), Gaps = 40/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + +++I+   AAD Q A+A+TD  N F  + F Q+A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   KGIKPIAGCDVWIANPDDRDKP----------SRLLLLVKDKVGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL     +GL+ L+G   G I  A    + + A +    + ++F    Y+
Sbjct: 110  YRGRAELDASWLDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAERWARVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q   LA + +LP+VAT+ + F++++D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAAALAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T D Y + + EM ++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   
Sbjct: 230  RRQKRFTTDQYFRTQDEMAALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAI---AKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GLE RLAQ       +      Y +RL+FE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSKEGLEARLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDSSKAD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L A+KG G      I+ A  +K F  L DFC R+D + +NRR +E+L+ A
Sbjct: 826  GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R QL+ S+    + A   E N       +F     +      L      + 
Sbjct: 886  GAFDSLNPNRAQLIASVPLAMEAADQAEANAM--QAGLFDMGAES---PHALVDEPAWDD 940

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   +           +A ++ S + + 
Sbjct: 941  KRRLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKVGDLKEGRDK---LVAGIIASLRTQM 997

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 998  TQRGK-MLIALLDDGTGQCEITIF 1020


>gi|322689545|ref|YP_004209279.1| DNA polymerase III subunit alpha [Bifidobacterium longum subsp.
            infantis 157F]
 gi|320460881|dbj|BAJ71501.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp.
            infantis 157F]
          Length = 1189

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/1075 (31%), Positives = 544/1075 (50%), Gaps = 53/1075 (4%)

Query: 1    LTQYLEK-SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
            + + +     +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E  
Sbjct: 1    MVERMADYGKNFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMY 60

Query: 60   QKACAAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                A G++PIIG +  +  +                     +    +  + +     EG
Sbjct: 61   TNCVANGVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEG 120

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
               LI+  S   L  +  +  R+    L    ++G+I  +G  SG I           A 
Sbjct: 121  LVNLIKASSVANLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEAL 179

Query: 169  KRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            +    F+ +FG D  ++ L  H    +      ++ +A     PL+ATN+S ++  ED +
Sbjct: 180  RAAGEFQDIFGKDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQ 239

Query: 227  AHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            A D ++ +   + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ + 
Sbjct: 240  AQDAMLCINSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLAIAERCNVMF 299

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
              H            +    +E +    K   GLE R        G    D  ++ D+E 
Sbjct: 300  DDHEDGAFMPKFPCPEG--WDETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYEC 351

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             VI +M+F GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FE
Sbjct: 352  GVICQMQFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFE 411

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+S+PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +
Sbjct: 412  RFLNPERVSLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIM 471

Query: 466  QMPYSQVDRLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEIS 515
               +S  +++ K +P        +SL  I D +         FRE   +DP   R+ E +
Sbjct: 472  GYEFSVGEKVTKALPPAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITEEA 531

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + +EGL R    HA   ++G  P++   P+  +       T F     E  GL+K DFLG
Sbjct: 532  KGIEGLIRQTGVHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLG 590

Query: 576  LKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L  LT++  +L  +       +D + IP DD ETY L++   TLG+FQL+S GMR  L+ 
Sbjct: 591  LSNLTIIHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKT 650

Query: 635  MQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGV 688
            ++PD   DI AL++LYRPGP+       Y  RKNG +KI  IHP ++  LK+    T G+
Sbjct: 651  LKPDNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGL 710

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            IIYQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  
Sbjct: 711  IIYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQA 770

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +
Sbjct: 771  VWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGE 830

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLE 866
            AR+  IQ++ P VN    ++    + + + L AI+ VG      I+         F +  
Sbjct: 831  ARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFM 890

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF  RV    LNRR++ESL+ AGA D    +R  L    +        +++ +     ++
Sbjct: 891  DFIRRVPLTALNRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDL 950

Query: 927  FAHEKGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
            F+  +   ++      +T+      +   +   E+ +LG Y S HPL   + IL  +   
Sbjct: 951  FSDAEDGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREM 1010

Query: 982  GYEESVATIR----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 V   +    G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1011 SIAHLVDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065


>gi|261496138|ref|ZP_05992546.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica
            serotype A2 str. OVINE]
 gi|261308240|gb|EEY09535.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica
            serotype A2 str. OVINE]
          Length = 1158

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1043 (39%), Positives = 598/1043 (57%), Gaps = 38/1043 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL+VHS +S++ G   + +++    A+   A+ +TD  N    ++F  +A  AGI+P
Sbjct: 5    RFVHLKVHSDFSMINGLAKVKSLVKTAVANNMVAMGLTDFTNFCGLVKFYGEALGAGIKP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  + +          + +        + LL    +GY  + +++S+ Y      +  
Sbjct: 65   IIGADVYV----------RTEAGSEDYFELTLLAKNNKGYHNITQILSKAYQQGYI-EFP 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +   WL E+  EG+I+L+GG  G + +A    + Q AE+++  +++ + +  Y+++ R 
Sbjct: 114  MVEREWLAEL-NEGIIILSGGRMGDVGKALLKENRQEAEEKVAFYQQYYPNHFYLSVCRT 172

Query: 190  RGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
               D  R   Q V+ +  + +PLVA N+ +FL E+D++AH++ +A+  S  +    RP+ 
Sbjct: 173  GRADEERYIKQAVEFSQKNAIPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKK 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +P  Y +   EM  +F+DLP AL NTVEIA+RCS  +++                +   
Sbjct: 233  YSPKQYFRTEEEMCKLFADLPSALANTVEIAKRCSVTVRLGEYF-----LPNFPTGELST 287

Query: 308  ENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLIV +FI
Sbjct: 288  EDFLVKKSKEGLEERLEFLFPDPEERANKRSVYDERLQVELDVINQMGFPGYFLIVMEFI 347

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            QW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC 
Sbjct: 348  QWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCM 407

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PYS VDR+ KLIP DP 
Sbjct: 408  DGRDRVIEHVAETYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPG 467

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P
Sbjct: 468  MTLE-KAFAAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSP 526

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLS 599
            +Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + +R        + + 
Sbjct: 527  LYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINERLAREGKEPIRIE 586

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I  DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+++ +
Sbjct: 587  TISLDDKKSFALLLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGM 646

Query: 660  VYNNRKNGKEK-------IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            V N       K           H  + P+L+ T GVI+YQEQVMQIAQ L+GY+L  AD+
Sbjct: 647  VQNFIDRKHGKEEVSYPDPQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADL 706

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  EEM  Q+E F  GA   GI   +A  IF+L+ KFA YGFNKSH+AAYA++
Sbjct: 707  LRRAMGKKKPEEMAAQREVFEKGAEAKGIDGKLAGQIFDLVEKFAGYGFNKSHSAAYALV 766

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+    F V +
Sbjct: 767  SYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECMNMGLTVVPPDVNSGKHRFSVNE 826

Query: 833  -NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               I Y L AIKGVG      I+ A   +  F  L D  +RVD KK+NRR  ESL+ +GA
Sbjct: 827  KGEIVYGLGAIKGVGEGPIEAILAARQKEGKFKDLFDLTARVDLKKINRRTFESLIMSGA 886

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSS 949
             D  G  R  L+++L++  K +    K       ++F     T  + +         +  
Sbjct: 887  FDKLGPHRAALMKNLEDALKASDQHAKMEELGQSDMFGVLTETPEEVQNAYANTPKWSEQ 946

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
            V  + E+  LG Y SGHP+  +   L         E   T RG    ++ +V++ +   T
Sbjct: 947  VILDGERATLGLYLSGHPIGRFLKELSHYAPNRLNELQPTFRGQMTTVSGIVMASRVAVT 1006

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
            ++GSRIG  T  + + + +   F
Sbjct: 1007 KRGSRIGIATIEDRSGKLDITLF 1029


>gi|330466901|ref|YP_004404644.1| DNA polymerase III subunit alpha [Verrucosispora maris AB-18-032]
 gi|328809872|gb|AEB44044.1| DNA polymerase III subunit alpha [Verrucosispora maris AB-18-032]
          Length = 1177

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/1061 (32%), Positives = 530/1061 (49%), Gaps = 44/1061 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YS+L+GA  L ++  ++     PA+A+TD  N+  A +F ++A AAG+ P
Sbjct: 4    SFAHLHVHTEYSMLDGAARLKDLFAEVKRQGMPAVAMTDHGNMHGANDFYKQAMAAGVTP 63

Query: 70   IIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            ++G +  +  +                    +       + +      G   L +L S+ 
Sbjct: 64   VLGIEAYVAPESRFHKKRVRWGRPEQKSDDVSGSGGYTHMTIWARNRVGLHNLFKLTSKA 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            Y      +  R+    L E   +GL+  TG  SG +           A +    ++ +FG
Sbjct: 124  YTEGYFVKWPRMDAELLAE-HADGLMATTGCPSGEVQTRLRLGHDAQALEAAAKYQDIFG 182

Query: 180  -DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +  ++ L  H    ++     ++++     +P V TN+S +  E   EAHDVL+ V   
Sbjct: 183  KENYFLELMDHGLDIEKQVRDGLLEIGRKLNIPPVVTNDSHYTHEAQSEAHDVLLCVQTG 242

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            + V+  +R +     Y    ++ +    +    LE           +           + 
Sbjct: 243  SNVADPNRFKFGGSGYYIKSADEMRGVDNSDVWLEGCRNTLLVAEKVDPTGMFEFHNLMP 302

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            +      + EE+  R +  AGL  R   G         +Y      EL VI +M F  YF
Sbjct: 303  RFPVPEGETEESWFRKETFAGLARRFPNGIPEGHVVQAEY------ELGVIIQMGFPSYF 356

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+VADFIQWAK   I VGPGRGS AGS+ AYAL ITD+DP+   L+FERFLNP+R+SMPD
Sbjct: 357  LVVADFIQWAKNQGIAVGPGRGSAAGSLVAYALGITDLDPIPHGLIFERFLNPERVSMPD 416

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             DIDF + RR EVI+YV +K+G ++VAQI TFG+++AKAA++D  R L  PY+  DR+ K
Sbjct: 417  VDIDFDERRRGEVIKYVTDKWGEDKVAQIATFGTIKAKAAIKDSARVLGYPYAVGDRITK 476

Query: 478  LIPN-DPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
             +P       +             A+    R    ++  V ++++ ++ +EGL R    H
Sbjct: 477  AMPPAVMGKDIPLEGIFDPKHPRYAEAGEIRGMYESEADVKKVIDTARGIEGLIRQTGVH 536

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAG+++   P+   +P+ R     + +TQF+    E  GL+K DFLGL+ LT++  ++  
Sbjct: 537  AAGVIMSAEPIIDHIPLMRRDSDGVIITQFDYPTCESLGLLKMDFLGLRNLTIIDDAVKN 596

Query: 589  -LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
                 G ++DL  +P DD   Y LL    TLG+FQL+   MR  L  M+PD  EDI A++
Sbjct: 597  IQLNHGKELDLLGLPLDDKGAYELLARGDTLGVFQLDGGPMRSLLRMMKPDNFEDISAVL 656

Query: 648  SLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQVMQIAQL 701
            +LYRPGP+  D+   Y  RKNG ++I  IHP ++  LK     T G+I+YQEQV + AQ+
Sbjct: 657  ALYRPGPMGVDSHTNYALRKNGLQEITPIHPELEEPLKEILAPTYGLIVYQEQVQRAAQI 716

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            L+GY+L +AD+LRRAMGKK KE +DK+   F  G  + G S      ++++L  FA Y F
Sbjct: 717  LAGYTLGQADLLRRAMGKKKKEILDKEFIPFRDGCRERGYSDDAIQKVWDVLVPFAGYAF 776

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NK+H+AAY ++SY TA++K HYP E++AA +T   D+ +K+  +  + R+  IQ++PP V
Sbjct: 777  NKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKMALYLSECRRMGIQVLPPDV 836

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRR 880
            NT    F      I + L AI+ VG      IM    +   +    DF S+VD+   N++
Sbjct: 837  NTSAGPFTPVGKEIRFGLGAIRNVGANVVTSIMRCRQEKGEYADFYDFLSKVDAVVCNKK 896

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             +ESL+ AGA D  G+SR  LL    +       V++       ++F    G        
Sbjct: 897  TIESLIKAGAFDSMGHSRKGLLTVHADAIDAYADVKRKEAVGQYDLFGAGFGEAEVATNT 956

Query: 941  EKFS-----VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA---TIRG 992
            +          +   +   E+ +LG Y S HPL   + IL                   G
Sbjct: 957  QVMPTIGDGEWDKRDKLAFEREMLGLYVSDHPLFGLEHILGASADCTISALSEEGTVPDG 1016

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + LA ++   Q++ T++G      T  + A   E  FFP
Sbjct: 1017 AVVTLAGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFP 1057


>gi|187923250|ref|YP_001894892.1| DNA polymerase III subunit alpha [Burkholderia phytofirmans PsJN]
 gi|187714444|gb|ACD15668.1| DNA polymerase III, alpha subunit [Burkholderia phytofirmans PsJN]
          Length = 1192

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1046 (38%), Positives = 599/1046 (57%), Gaps = 39/1046 (3%)

Query: 5    LE--KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            +     P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A
Sbjct: 1    MSPMSDPRFVHLRVHSEFSIADGIVRLDDIVKAAAKDGQGALALTDLGNAFGLVRFYKEA 60

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               G++PI GC + I   D+                ++LLV    GY  L EL+S+  L 
Sbjct: 61   RGKGVKPIAGCDVWITNPDDRDKP----------SRLLLLVKDRRGYLNLCELLSKASLT 110

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +Q +    +   WL+    EGL+ L+G   G +  A    + + A++  L + K+F    
Sbjct: 111  NQYRGRAEVEAGWLESGLGEGLLALSGAQQGDVGLALAAGNEEAAKRNALHWAKVFPGGF 170

Query: 183  YVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ LQR           Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++
Sbjct: 171  YIELQRSGQPGGEQYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILA 230

Query: 242  QKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               R  R T + Y + + EM ++F+D+P AL N+VEIA+RC+  L++  P LP F   + 
Sbjct: 231  NPRRSKRFTSEQYFRTQEEMAALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDG 290

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
              +    ++ L   +  GLE RL Q    A  +    + Y  RL+FE   I +M F GYF
Sbjct: 291  MSL----DDYLVQLSKEGLEKRLEQLYPDAAEREAQRETYYARLEFECGTIIKMGFPGYF 346

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPD
Sbjct: 347  LIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPD 406

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + K
Sbjct: 407  FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAK 466

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP  P   V++   + ++   +E    +  V +LLE++Q++EGL R+   HA G++I  
Sbjct: 467  LIPFKPGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAP 526

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593
              L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +     
Sbjct: 527  GKLTDFCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 586

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L  +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPG
Sbjct: 587  QDWSLGQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPG 646

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  +  RK+G+E +    P ++ +L+ET G+++YQEQVMQ+AQ++ GYSL  AD+L
Sbjct: 647  PMDLIPSFCARKHGREVVEYPDPRVESVLRETYGIMVYQEQVMQMAQIIGGYSLGGADLL 706

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  EEM + +E F  GA+KNG++   A  IF+L+ KFA YGFNKSHAAAYA+++
Sbjct: 707  RRAMGKKKAEEMAEHRELFRQGAAKNGLTAEKADEIFDLMEKFAGYGFNKSHAAAYALLA 766

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-- 831
            Y TAW+K H+P EF+AA+M+L MD+ +K+K   +D     + ++PP VN     F+    
Sbjct: 767  YYTAWLKAHHPAEFMAANMSLAMDDTDKVKILFEDCLANKMAVLPPDVNLSAYRFEPVAE 826

Query: 832  -----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                    I Y L AIKG G      I+ A  + PF  + DFC+RVD + +NRR +E+L+
Sbjct: 827  PDGKRSKTIRYGLGAIKGSGQNAIEEILRAREEGPFIDIFDFCNRVDRRIVNRRTVEALI 886

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AGA D    +R QL+ S+    + A+    N       +F       S    L      
Sbjct: 887  RAGAFDTLHANRAQLIASVSLAMEAAEQASANAL--QAGLF-DMGDAPSQGHELVDEPEW 943

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                + + E+  LGFY SGH  D YK  +R+   +   E           +A ++ S + 
Sbjct: 944  PEKKKLQEEKAALGFYLSGHLFDAYKNEVRRFVRQKIGELKEGRDK---LVAGVIASLRT 1000

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + T++G  +      +   + E   F
Sbjct: 1001 QMTQRGK-MLIALLDDGTGQCEVTVF 1025


>gi|291086159|ref|ZP_06354987.2| DNA polymerase III, alpha subunit [Citrobacter youngae ATCC 29220]
 gi|291068957|gb|EFE07066.1| DNA polymerase III, alpha subunit [Citrobacter youngae ATCC 29220]
          Length = 1144

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1032 (39%), Positives = 602/1032 (58%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G    +    
Sbjct: 1    MIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFHV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  + +     +  + +L +   GYQ L  L+S+ Y    G +   I   WL E+  
Sbjct: 57   ------RSELLGDELTQLTVLAANNTGYQNLTLLISKAYQRGYGAEGPVIDRDWLVEL-K 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + R+    +S + ++ +  +++ F +  ++ L R    D        
Sbjct: 110  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPNSYFLELIRTGRQDEENYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA T  LP+VATN+  FL   D++AH++ +A+     +    RPR  +   Y+++  E
Sbjct: 170  VELAETRGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPKRPRNYSAQQYMRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEAL+NTVEIA+RC+  +++           +        E+ L  K+  GL
Sbjct: 230  MCELFSDIPEALQNTVEIAKRCNVTVRLGEYF-----LPQFPTGDMTTEDFLVAKSKEGL 284

Query: 320  E---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E     L      +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EQRLEFLFPDPEERAKRRPEYDERLDVELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTL-AKAFEAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D +   PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGLHPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K      D++ IP DD +++ +
Sbjct: 524  QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA K G+   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRGTFEEGAKKRGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V  D  I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA  +   F  L D C+R D KKLNRRVLE L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARNEGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL +  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  NSLSDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP++ Y   + +  G    ++   T RG     A +V++ +   T++G+RIG  T 
Sbjct: 944  YLTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEVMLF 1015


>gi|307246021|ref|ZP_07528103.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 1 str. 4074]
 gi|307255002|ref|ZP_07536820.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 9 str. CVJ13261]
 gi|307259438|ref|ZP_07541163.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 11 str. 56153]
 gi|306852956|gb|EFM85179.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 1 str. 4074]
 gi|306861875|gb|EFM93851.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 9 str. CVJ13261]
 gi|306866374|gb|EFM98237.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 11 str. 56153]
          Length = 1158

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1048 (38%), Positives = 605/1048 (57%), Gaps = 39/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  +A  
Sbjct: 1    MTQQ-RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +  + + +              + LL     GY  +  L+S+ Y    
Sbjct: 60   SGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAYQQGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              +   +  +WL E+  EG+I+L+GG +G + +A    +   A++ +  +++ F +  Y+
Sbjct: 110  V-EFPLVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENEAEADELVGFYQQYFPNHYYL 167

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  +   
Sbjct: 168  ALCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDP 227

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP + +P  Y ++  EM ++F+DLP+A+ENTV+IA RC+  +++       +       
Sbjct: 228  KRPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGE-----YFLPNFPT 282

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLI
Sbjct: 283  GDLSTEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLI 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 343  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 402

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+ KLI
Sbjct: 403  VDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLI 462

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 463  PPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAI 521

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR       
Sbjct: 522  TDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKE 581

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP
Sbjct: 582  PVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGP 641

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +++ +V       + + +         H  + P+L  T GVI+YQEQVMQIAQ+L+GY+L
Sbjct: 642  LESGMVQNFIDRKHGHEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTL 701

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 702  GGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+    
Sbjct: 762  AYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSGKHR 821

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR  E L
Sbjct: 822  FSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGL 881

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+++L++  K +    K       ++F     T  + +       
Sbjct: 882  IMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTP 941

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +     E E+  LG Y SGHP+  +   L         E   T RG  + +A +++  
Sbjct: 942  KWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGS 1001

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++GSR+G  T  + + + +   F
Sbjct: 1002 RIAVTKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|190150430|ref|YP_001968955.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 7 str. AP76]
 gi|189915561|gb|ACE61813.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 7 str. AP76]
          Length = 1201

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1048 (39%), Positives = 605/1048 (57%), Gaps = 39/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  +A  
Sbjct: 44   MTQQ-RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALG 102

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +  + + +              + LL     GY  +  L+S+ Y    
Sbjct: 103  SGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAYQQGY 152

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              +   +  +WL E+  EG+I+L+GG +G + +A    +   A++ +  +++ F +  Y+
Sbjct: 153  V-EFPLVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENQAEADELVGFYQQYFPNHYYL 210

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  +   
Sbjct: 211  ALCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDP 270

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP + +P  Y ++  EM ++F+DLP+A+ENTV+IA RC+  +++       +       
Sbjct: 271  KRPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGE-----YFLPNFPT 325

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLI
Sbjct: 326  GDLSTEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLI 385

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 386  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 445

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+ KLI
Sbjct: 446  VDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLI 505

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 506  PPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAI 564

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR       
Sbjct: 565  TDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKE 624

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP
Sbjct: 625  PVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGP 684

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +++ +V       + N +         H  + P+L  T GVI+YQEQVMQIAQ+L+GY+L
Sbjct: 685  LESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTL 744

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 745  GGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSA 804

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+    
Sbjct: 805  AYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSGKHR 864

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR  E L
Sbjct: 865  FSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGL 924

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+++L++  K +    K       ++F     T  + +       
Sbjct: 925  IMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTP 984

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +     E E+  LG Y SGHP+  +   L         E   T RG  + +A +++  
Sbjct: 985  KWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGS 1044

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++GSR+G  T  + + + +   F
Sbjct: 1045 RIAVTKRGSRLGIATIEDRSGKLDMTLF 1072


>gi|32035303|ref|ZP_00135310.1| COG0587: DNA polymerase III, alpha subunit [Actinobacillus
            pleuropneumoniae serovar 1 str. 4074]
 gi|126208577|ref|YP_001053802.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            L20]
 gi|307263773|ref|ZP_07545379.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 13 str. N273]
 gi|126097369|gb|ABN74197.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 5b str. L20]
 gi|306870894|gb|EFN02632.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 13 str. N273]
          Length = 1158

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1048 (39%), Positives = 605/1048 (57%), Gaps = 39/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  +A  
Sbjct: 1    MTQQ-RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +  + + +              + LL     GY  +  L+S+ Y    
Sbjct: 60   SGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAYQQGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              +   +  +WL E+  EG+I+L+GG +G + +A    +   A++ +  +++ F +  Y+
Sbjct: 110  V-EFPLVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENQAEADELVGFYQQYFPNHYYL 167

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  +   
Sbjct: 168  ALCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDP 227

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP + +P  Y ++  EM ++F+DLP+A+ENTV+IA RC+  +++       +       
Sbjct: 228  KRPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGE-----YFLPNFPT 282

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLI
Sbjct: 283  GDLSTEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLI 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 343  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 402

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+ KLI
Sbjct: 403  VDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLI 462

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 463  PPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAI 521

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR       
Sbjct: 522  TDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKE 581

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP
Sbjct: 582  PVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGP 641

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +++ +V       + N +         H  + P+L  T GVI+YQEQVMQIAQ+L+GY+L
Sbjct: 642  LESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTL 701

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 702  GGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+    
Sbjct: 762  AYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSGKHR 821

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR  E L
Sbjct: 822  FSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGL 881

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+++L++  K +    K       ++F     T  + +       
Sbjct: 882  IMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTP 941

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +     E E+  LG Y SGHP+  +   L         E   T RG  + +A +++  
Sbjct: 942  KWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGS 1001

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++GSR+G  T  + + + +   F
Sbjct: 1002 RIAVTKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|254428613|ref|ZP_05042320.1| DNA polymerase III, alpha subunit subfamily, putative [Alcanivorax
            sp. DG881]
 gi|196194782|gb|EDX89741.1| DNA polymerase III, alpha subunit subfamily, putative [Alcanivorax
            sp. DG881]
          Length = 1166

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1055 (39%), Positives = 608/1055 (57%), Gaps = 41/1055 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL++H+ YSL++G + +  ++      Q PA+A+TD +NLF+ ++F Q A  
Sbjct: 1    MSD-PRFVHLRLHTDYSLVDGVVRVKELIKTCVNQQIPAVAVTDDSNLFALIKFYQNAMN 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+P++G  L +             T       +  LV    GYQ L  L+SR +  +Q
Sbjct: 60   AGIKPLMGADLWV-----------QGTHIEEPACLSFLVLNEAGYQNLTLLISRAWQTNQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +   W+ E+  EGLI+L+  S G + +       ++A++       ++GDR Y+
Sbjct: 109  DRGRALVKPEWVAEL-NEGLIVLSAASQGEVGQLLLAEKYELAQQYASWLASVYGDRFYL 167

Query: 185  NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR  R  D       V LA    LP+VATN+  FL  ED+EAH+  + +     +   
Sbjct: 168  EVQRTSRPGDEDCLHASVTLAGQLGLPVVATNDVRFLRREDFEAHESRVCIHDGNTLDDP 227

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  + + YLK+  EM  +F+DLPEALENTVEIARRC+  +++    LP F   +   
Sbjct: 228  RRPKKYSEEQYLKSAEEMAELFADLPEALENTVEIARRCTLDIRLGENFLPDFPIPDGMT 287

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            I++  E    +     L+V L +         +DY  RL FEL++I +M F GYFLIVAD
Sbjct: 288  IEQYFEKVSSDGLEERLKVLLDKDDPEYAIKRKDYDDRLRFELDIINQMGFPGYFLIVAD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW K N +PVGPGRGSGAGS+ AYA+ ITD+DP+ + LLFERFLNP+R+SMPDFD+DF
Sbjct: 348  FIQWGKDNEVPVGPGRGSGAGSLVAYAMKITDLDPIGYDLLFERFLNPERVSMPDFDVDF 407

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C ++RD VI YV +KYG + V+QIITFG++ AKA +RDV R    PY   DRL K+IP  
Sbjct: 408  CMEKRDRVINYVADKYGRDAVSQIITFGTMAAKAVVRDVARVQGKPYGLADRLSKMIPGI 467

Query: 483  PAHPVSLQAIADDSRFREARLADPSV-----DRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            P   ++ +A+  +   RE   +D +      + ++E++ KLEGL R+   HA G+VI   
Sbjct: 468  PGMTLT-KALEQEETLREFLESDENSDKDAANEIMEMAFKLEGLTRNVGKHAGGVVIAPG 526

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS-----LDFLAQR 592
             L+   P+Y +      VTQ++   +E AGL+KFDFLGLKTLT++  +     +    + 
Sbjct: 527  KLTDFAPLYCEEDGTNLVTQYDKDDVESAGLVKFDFLGLKTLTIIDWAVKAANVKRGREG 586

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               + +  IP DD  ++ LL    T  +FQLES GM++ ++ +QPD  EDIIALV+LYRP
Sbjct: 587  LDDLVIDHIPLDDGPSFDLLKRGDTTAVFQLESQGMKELIKKLQPDVFEDIIALVALYRP 646

Query: 653  GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+++ +V N                   H  ++P+LK + GVI+YQEQVMQIAQ L+GY
Sbjct: 647  GPLESGMVDNFVNRKHGREPLAYPDPQYQHEWLEPILKPSYGVILYQEQVMQIAQELAGY 706

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH
Sbjct: 707  TLGGADMLRRAMGKKKPEEMAKQRAIFEEGAKGKGVDPDLAMKIFDLVEKFAGYGFNKSH 766

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAYA+++YQTAW+K HYP EF+AA+++ +M N +K+  F  + +   +Q++PP VN+  
Sbjct: 767  SAAYALVAYQTAWLKVHYPAEFMAATISADMQNTDKVVTFIDECKTMGLQVLPPDVNSCG 826

Query: 826  VDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLE 883
              F V  +  I Y L AIKG+G      I+ A AD   F  L DFC R+D KK+NRR LE
Sbjct: 827  YRFTVNPEGDIVYGLGAIKGLGEGPIDAIVSARADGGEFKDLFDFCRRIDLKKINRRSLE 886

Query: 884  SLVFAGALDCFG-----YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            ++V AG LD  G     + R QLL +L +    A    +N      ++F     + +  +
Sbjct: 887  AMVRAGVLDKLGPKSSFHDRAQLLATLPDAIAAADQDARNEAAGIMDMFGAVDDSPATAV 946

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
              +     N   R   E+  LG + +GHP+D Y+  +R+           T +G    +A
Sbjct: 947  EWKPARAWNDETRLNGERDTLGLFLTGHPIDQYEKEVRQFVTARINSLQPTGKGEAATIA 1006

Query: 999  AMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
             +VV+ +  ++++ G R+ ++T  +     E + F
Sbjct: 1007 GLVVALRITRSKRSGDRMAFITLDDKTGRVEVSVF 1041


>gi|91792926|ref|YP_562577.1| DNA polymerase III subunit alpha [Shewanella denitrificans OS217]
 gi|91714928|gb|ABE54854.1| DNA polymerase III, alpha subunit [Shewanella denitrificans OS217]
          Length = 1159

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1047 (38%), Positives = 598/1047 (57%), Gaps = 37/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G   +  IL +       AIA+TD NN    ++F      
Sbjct: 1    MTD-PRFVHLRVHSDFSMTDGVAKVKPILAEAERQGMAAIALTDQNNFCGLVKFYGGCHN 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G    +          Q       + ++ ++     GYQ L +++S+ YL  Q
Sbjct: 60   AGIKPIVGADFWM----------QVPGFDKELCALTIIAMDNHGYQNLTQIISQAYLRGQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                V I   WL     +G+++L+G   G + +A    +    +  +  ++  F  R ++
Sbjct: 110  INGRVVIDQDWLVTY-NQGILVLSGAKEGDVGKALLKGNLPQVDSLIQFYQTHFDGRYFL 168

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R     V LA   +LP+VATN  +FL  +D+E+H++ +A++    ++  
Sbjct: 169  ELIRTGRSDEERYLHMAVNLAKERDLPVVATNQVVFLKADDFESHEIRVAISDGYTLADP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  + + YL++  EM ++FSD+P AL N+VEIA+RC+  ++++              
Sbjct: 229  RRPKTYSAEQYLRSEEEMCALFSDIPSALSNSVEIAKRCNVTIRLYEYF-----LPNFPT 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L   +  GLE RL      +   AQ   +Y +RL  EL VI +M F GYFLI
Sbjct: 284  GDLSTEDFLVVVSEKGLEERLEFLFPDEQVRAQRRGEYDERLAIELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWGKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC DRRDEVI +V + YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404  VDFCMDRRDEVIDHVADLYGREAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLI 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +P   +  +A   +   +E+   D  V  L+++ ++LEG+ R+A  HA G+VI    +
Sbjct: 464  PAEPGMTL-AKAFEVEPALQESYDGDEDVKELIDMCRRLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +        
Sbjct: 523  TDFSPLYCDAEGNNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVQLQNGLD 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             + +  IP DD + + LL    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583  PIRIEAIPLDDPKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +         H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643  LQSGMVDNFIERKHGREEVSYPDAQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA  NGI   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAKQRGTFKEGAINNGIDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTH+P +F+AA M+ +MDN +KI     +  +  + ++PP VN     
Sbjct: 763  AYALVSYQTLWLKTHFPAQFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFK 822

Query: 828  FKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F V +   I Y + AIKGVG      I+EA  + PF  L DFC+RVD KKLN+R++E L+
Sbjct: 823  FTVDEAFNIVYGIGAIKGVGEGPVESILEARVNGPFTDLFDFCARVDLKKLNKRIIEKLI 882

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSV 945
             AGALD  G  R  ++ +L      A    K       ++F        D K    +   
Sbjct: 883  CAGALDSLGPHRASMMATLPQAISAAAQHAKAEAIGQHDMFGLLNSEPEDNKQQFVECMP 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                +  E E+  LG Y +GHP++ Y   L++      ++   T RG   + A +VV+ +
Sbjct: 943  WPDKIWLEGERDTLGLYLTGHPINQYLKELKQYTSGRLKDVHPTERGKTAKAAGLVVATR 1002

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               T++G+++G VT  + +   E   F
Sbjct: 1003 VMLTKRGAKMGLVTLDDKSARLEVMLF 1029


>gi|296159171|ref|ZP_06841998.1| DNA polymerase III, alpha subunit [Burkholderia sp. Ch1-1]
 gi|295890732|gb|EFG70523.1| DNA polymerase III, alpha subunit [Burkholderia sp. Ch1-1]
          Length = 1193

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1046 (38%), Positives = 607/1046 (58%), Gaps = 39/1046 (3%)

Query: 5    LE--KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            +     P FVHL+VHS +S+ +G + L++++   A D Q A+A+TD  N F  + F ++A
Sbjct: 1    MSPMSDPRFVHLRVHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEA 60

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               G++PI GC + I   D+ +              ++LLV    GY  L EL+S+  L 
Sbjct: 61   RGKGVKPIAGCDVWITNPDDREKP----------SRLLLLVKDRRGYLNLCELLSKASLT 110

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +Q +    I   WL+    EGL+ L+G   G +  A    + + A++  L + K+F    
Sbjct: 111  NQYRGRAEIEAGWLESGLGEGLLALSGAQQGDVGLALAAGNEEAAKRNALHWAKVFPGGF 170

Query: 183  YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +QR  +    +   Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++
Sbjct: 171  YIEVQRCGQPGGEHYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILA 230

Query: 242  QKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               R  R TP+ Y + + EM ++F+D+P AL N+VEIA+RC+  L++  P LP F   + 
Sbjct: 231  NPRRSKRFTPEQYFRTQEEMAALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDG 290

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
              +    ++ L + +  GLE RL Q    A  +    + Y QRL+FE   I +M F GYF
Sbjct: 291  MSL----DDYLVHLSKEGLEKRLEQLYPDAAEREAQRETYYQRLEFECGTIIKMGFPGYF 346

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPD
Sbjct: 347  LIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPD 406

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + K
Sbjct: 407  FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAK 466

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP  P   V++   + ++   +E    +  V +LLE++Q++EGL R+   HA G++I  
Sbjct: 467  LIPFKPGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAP 526

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593
              L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +     
Sbjct: 527  GKLTDFCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 586

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPG
Sbjct: 587  QDWSLAQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPG 646

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  +  RK+G+E +    P ++ +LKET G+++YQEQVMQ+AQ++ GYSL  AD+L
Sbjct: 647  PMDLIPSFCARKHGREVVEYPDPRVESVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 706

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  EEM + +E F  GA+KNG++   A  IF+L+ KFA YGFNKSHAAAYA+++
Sbjct: 707  RRAMGKKKAEEMAEHRELFRQGAAKNGLAGEKADEIFDLMEKFAGYGFNKSHAAAYALLA 766

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            Y TAW+K H+P EF+AA+M+L MD+ +K+K   +D     + ++PP VN     F+    
Sbjct: 767  YYTAWLKAHHPAEFMAANMSLAMDDTDKVKILFEDCLVNKMAVLPPDVNLSAYRFEPVAE 826

Query: 834  R-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                    I Y L AIKG G      I+ A  + PF  + DFC+RVD + +NRR +E+L+
Sbjct: 827  ADGKRSRTIRYGLGAIKGSGQNAIEEILRAREEGPFIDIFDFCNRVDRRIVNRRTVEALI 886

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AGA D    +R QL+ S+    + A+    N       +F     + S    L      
Sbjct: 887  RAGAFDTLHANRAQLIASVSLAMEAAEQASANAL--QAGLF-DMGDSPSQGHELVDEPEW 943

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                + + E+  LGFY SGH  D YK  +R+   +   E           +A ++ S + 
Sbjct: 944  PEKKKLQEEKAALGFYLSGHLFDAYKDEVRRFVRQKIGELKEGRDK---LVAGVIASLRT 1000

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + T++G  +      +   + E   F
Sbjct: 1001 QMTQRGK-MLIALLDDGTGQCEVTVF 1025


>gi|107023251|ref|YP_621578.1| DNA polymerase III subunit alpha [Burkholderia cenocepacia AU 1054]
 gi|116690334|ref|YP_835957.1| DNA polymerase III subunit alpha [Burkholderia cenocepacia HI2424]
 gi|105893440|gb|ABF76605.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia AU 1054]
 gi|116648423|gb|ABK09064.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424]
          Length = 1177

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1044 (39%), Positives = 607/1044 (58%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + +++I+   AAD Q A+A+TD  N F  + F Q+A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   KGIKPIAGCDVWIANPDDRDKP----------SRLLLLVKDKVGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL     +GL+ L+G   G I  A    + + A +    + ++F    Y+
Sbjct: 110  YRGRAELDASWLDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAERWARVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q   LA + +LP+VAT+ + F++++D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAAALAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T D Y + + EM ++F+DLP A+ NTVEIA+RC+  L++  P LP F   +   
Sbjct: 230  RRQKRFTTDQYFRTQDEMAALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAI---AKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GLE RLAQ       +      Y +RL+FE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSKEGLEARLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++ + +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +      +
Sbjct: 526  LTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKAE 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D    N+ ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAEAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L A+KG G      I+ A  +K F  L DFC R+D + +NRR +E+L+ A
Sbjct: 826  GKRSRTIRYGLGAVKGSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R QL+ S+    + A   E N       +F     +      L      + 
Sbjct: 886  GAFDSLNPNRAQLIASVPLAMEAADQAEANAM--QAGLFDMGAES-PHAHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   +           +A ++ S + + 
Sbjct: 943  KRRLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKVGDLKEGRDK---LVAGIIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MLIALLDDGTGQCEITIF 1022


>gi|154509031|ref|ZP_02044673.1| hypothetical protein ACTODO_01548 [Actinomyces odontolyticus ATCC
            17982]
 gi|153798665|gb|EDN81085.1| hypothetical protein ACTODO_01548 [Actinomyces odontolyticus ATCC
            17982]
          Length = 1180

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/1064 (32%), Positives = 551/1064 (51%), Gaps = 46/1064 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL  HS YS+L+GA     + ++ A   QPAI +TD   LF A +F      AG+
Sbjct: 2    ADSFVHLHNHSEYSMLDGAAKTKAMAEEAARLGQPAIGLTDHGYLFGAFDFYTNCKNAGV 61

Query: 68   QPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            +PIIG +  +                        +   +   + L+     G   L  L 
Sbjct: 62   KPIIGLEAYVTPGTSRFDRQKVLWGEPWQRADDVSAGGSYNHLTLVAYNTTGMHNLFRLG 121

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S      Q  +  R     L +   EGLI+ TG  SG +           A       + 
Sbjct: 122  SYASTDGQFGKWPRADKELLSQFH-EGLIVFTGCPSGAVQTRLRLGQWDEAVAEAAELRD 180

Query: 177  LFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            +FG +  YV +  H    +R    QV+++A     PLVATN++ ++  ED +  D L+ +
Sbjct: 181  IFGAENFYVEVMDHGIDIERRTHQQVLEIAKLMNAPLVATNDAHYVKREDRKIQDALLCI 240

Query: 235  AHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
               + ++  DR +   D +Y+++  EM +++S+LP A ++T+EIA RC            
Sbjct: 241  NSGSRINDPDRFKFDGDGYYIRSSDEMRALWSELPGACDSTLEIAERCDVHFTTTKEGAN 300

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             ++        +++ +    +   GL  R   G         D R++  +E +VI +M F
Sbjct: 301  -YMPDFPVPEGEDKTSWFIKEVERGLRDRFPNG------IPDDVRKQAQYEEDVIIKMGF 353

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFL VAD+I WAK   I VGPGRGSGAGS+ AYAL IT+++PL   L+FERFLNP+R+
Sbjct: 354  PGYFLTVADYINWAKSQGIRVGPGRGSGAGSMVAYALKITELNPLEHGLIFERFLNPERI 413

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPDFD+DF + RRDEVI YV+ KYG +R++Q++T+G+++ K AL+D  R L   +   +
Sbjct: 414  SMPDFDVDFDERRRDEVIAYVKRKYGEDRISQVVTYGTIKTKQALKDSARILGKDFKVGE 473

Query: 474  RLCKL-IPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRH 524
            +L K   P      +++  I D+          FR+    +P    +++ +  LEGL R 
Sbjct: 474  QLTKALPPAIMGKDITVHGIFDEKDKRYAEASEFRKFYEENPDTHEVVQYALGLEGLTRQ 533

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HA  +++    L+ ++P+ +  +    +TQF+    E  GL+K DFLGL+ LT++  
Sbjct: 534  WGVHACAVIMSSHTLTDIIPIMKRPQDGAIITQFDYPTCETLGLLKMDFLGLRNLTVVSD 593

Query: 585  SLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +L+ +A       DL  + FDD +TY LL    TLG+FQL+  GMR  L+ M+PD  EDI
Sbjct: 594  ALENIALNGKPDPDLDHLTFDDKKTYELLGRGDTLGVFQLDGGGMRDLLKLMKPDNFEDI 653

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQ 697
             A+ +LYRPGP+  ++   Y  RKNG+++I  IHP +   L++    T G+I+YQEQVMQ
Sbjct: 654  SAVGALYRPGPMGANSHTNYALRKNGRQEITPIHPELAEPLEDILGTTFGLIVYQEQVMQ 713

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IAQ L+GYSL +AD+LR+AMGKK KE +D+Q + F  G   NG S+     +++++  F+
Sbjct: 714  IAQKLAGYSLGQADILRKAMGKKKKEVLDQQFKGFRQGMVANGYSEESIKALWDVVVPFS 773

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             Y FNK+H+AAY ++SY TA++K ++P E++AA +T   DN ++   +  + R  +I ++
Sbjct: 774  AYAFNKAHSAAYGLVSYWTAFLKANFPTEYMAALLTSTKDNKDRRALYLAECRHMDITVL 833

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876
            PP VN    +F      I + L AI+ VG      I+E  A+   F S +DF  +V    
Sbjct: 834  PPDVNASMGNFAPDGEAIRFGLNAIQNVGGPVVDAIVETRAEKGRFASFQDFLDKVPQVV 893

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             N+R ++SL+ AGA D  G++R  LL   D        V++N      ++F         
Sbjct: 894  CNKRTIQSLIRAGAFDSMGHTRRALLARCDEAVDAIIDVKRNEAIGQFDLFGALGEDEDT 953

Query: 937  ----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---AT 989
                 I +      +   +   E+ +LG Y S HPL   +  L +       + V     
Sbjct: 954  GSGLTIDIPDLPEFDRKTKLAAEREMLGLYVSDHPLRGVEAALARHQDYEIAQVVGSDGA 1013

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +    +++A ++     K T++G+     T  + +   +  FFP
Sbjct: 1014 MADRIVKIAGLISGVTTKVTKQGNAWAIATIEDLSGSVDVLFFP 1057


>gi|71279814|ref|YP_268312.1| DNA polymerase III subunit alpha [Colwellia psychrerythraea 34H]
 gi|71145554|gb|AAZ26027.1| DNA polymerase III, alpha subunit [Colwellia psychrerythraea 34H]
          Length = 1186

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1059 (39%), Positives = 605/1059 (57%), Gaps = 50/1059 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
             P F+HL+VHS YS+ +G   +  I+ K      PA+A+TD  NL   +++   A  AGI
Sbjct: 17   PPKFIHLRVHSDYSMCDGLKKVKPIVAKAVELNMPALALTDQTNLCGLVKYYHAAHGAGI 76

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIGC   +          +       +  IV+L +   GY+ + EL+S+ Y+    + 
Sbjct: 77   KPIIGCDFWV----------KSDELEDELSRIVVLTTNNVGYKNITELISKAYMRGHIQN 126

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I  SWL E   EGLI+L+GG  G I +A    ++++ ++ +  +++ F    ++ L 
Sbjct: 127  KAVIDKSWLVEY-KEGLILLSGGREGDIGKALLKGNTELVDEMVSFYQQHFDRCYFLELV 185

Query: 188  RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R    D        V+LA    LP+VATN  +FLS  D++AH++ +A+     +  K RP
Sbjct: 186  RTGRNDEENYIHLAVELAEKENLPVVATNEVMFLSPNDFDAHEIRVAIHDGFTLDDKRRP 245

Query: 247  -RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R + + YL++  EM  +FSD+PEAL N+VEIA+RC+  + +       ++  +      
Sbjct: 246  KRYSSEQYLRSEEEMCELFSDIPEALANSVEIAKRCNVTVTLGE-----YVLPDFPTEGL 300

Query: 306  EEENELRNKAVAGLEVRLAQ----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            E  +     +  GLE RL Q     A       + Y +RL  EL V+  M F GYFLIV 
Sbjct: 301  EINDFFIKVSEKGLEKRLDQLFDRQADDFAEIRKPYDERLAIELEVVNNMGFPGYFLIVM 360

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K NNIPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID
Sbjct: 361  EFIQWSKDNNIPVGPGRGSGAGSLVAYALDITDLDPLEYDLLFERFLNPERVSMPDFDID 420

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC DRRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 421  FCMDRRDEVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 480

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P   +  +A  ++ +  E    D  V  L+++ + LEG  R+A  HA G+VI    ++ 
Sbjct: 481  TPGMTL-AKAFEEEPKLPEVYAQDSDVKDLIDMCRILEGTTRNAGKHAGGVVISPTTITD 539

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT+LQ +++    +        +
Sbjct: 540  FAPLYCDDEGKNPVTQFDKNDVEDAGLVKFDFLGLRTLTILQWAIEMADAKLIKAGKEPI 599

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ I  +D  ++ LL    T  +FQLESSGM+  ++ ++PDC EDIIALV+L+RPGP+ 
Sbjct: 600  DITKIDLEDKASFKLLLASKTTAVFQLESSGMKSLIDKLKPDCFEDIIALVALFRPGPLQ 659

Query: 657  NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V  +  RK+G+E++        H  + P+L+ T G+I+YQEQVMQIAQ+L+GYSL  
Sbjct: 660  SGMVDNFIERKHGREEVSYPDATWQHEDLQPVLEPTYGIILYQEQVMQIAQVLAGYSLGG 719

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 720  ADMLRRAMGKKKPEEMAKQRAGFEQGAKDRGVDGELAMKIFDLVEKFAGYGFNKSHSAAY 779

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT WMKTH+P  F+AA M+ +MDN EKI     +     I ++PP VN     F 
Sbjct: 780  ALVSYQTLWMKTHFPAPFMAAVMSADMDNTEKIVTLVDECGNMEIDLLPPDVNAGQYKFT 839

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V  DN+I Y + A+KGVG      I+ A   D PF  L DFC+R+D KK N+RVLE L+ 
Sbjct: 840  VNSDNQIVYGIGAVKGVGEGPIEAIISARQSDGPFTDLFDFCARLDLKKTNKRVLEKLIK 899

Query: 888  AGALDCFGY------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            +GA+D  G             +R  L ++L    K A+   K  +    ++F       +
Sbjct: 900  SGAMDSLGPKYVQGKAKEQGANRAALFETLPEAIKAAEQHAKAESLGQNDLFGLINDEQT 959

Query: 936  D-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
            D + T ++          + E+  LG Y +GHP++ Y   ++K           T R   
Sbjct: 960  DSRQTFKEVRAWPEEKWLDGEKETLGLYLTGHPINRYLSEIKKYSSSRLVVMQPTGRDRQ 1019

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 +V+  +    ++G R   VT  + +   +   FP
Sbjct: 1020 AVAVGLVIGVRVLVNKRGRRWALVTLDDKSARMDIRLFP 1058


>gi|307250356|ref|ZP_07532305.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 4 str. M62]
 gi|306857631|gb|EFM89738.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 4 str. M62]
          Length = 1158

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1048 (38%), Positives = 604/1048 (57%), Gaps = 39/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  +A  
Sbjct: 1    MTQQ-RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +  + + +              + LL     GY  +  L+S+ Y    
Sbjct: 60   SGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAYQQGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              +   +  +WL E+  EG+I+L+GG +G + +A    +   A++ +  +++ F +  Y+
Sbjct: 110  V-EFPLVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENEAEADELVGFYQQYFPNHYYL 167

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  +   
Sbjct: 168  ALCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDP 227

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP + +P  Y ++  EM  +F+DLP+A+ENTV+IA RC+  +++       +       
Sbjct: 228  KRPKKYSPQQYFRSEQEMCVLFADLPQAVENTVQIAMRCNVTVRLGE-----YFLPNFPT 282

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLI
Sbjct: 283  GDLSTEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLI 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 343  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 402

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+ KLI
Sbjct: 403  VDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLI 462

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 463  PPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAI 521

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR       
Sbjct: 522  TDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKE 581

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP
Sbjct: 582  PVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGP 641

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +++ +V       + + +         H  + P+L  T GVI+YQEQVMQIAQ+L+GY+L
Sbjct: 642  LESGMVQNFIDRKHGHEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTL 701

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 702  GGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+    
Sbjct: 762  AYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSGKHR 821

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR  E L
Sbjct: 822  FSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGL 881

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+++L++  K +    K       ++F     T  + +       
Sbjct: 882  IMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTP 941

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +     E E+  LG Y SGHP+  +   L         E   T RG  + +A +++  
Sbjct: 942  KWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGS 1001

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++GSR+G  T  + + + +   F
Sbjct: 1002 RIAVTKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|188580262|ref|YP_001923707.1| DNA polymerase III, alpha subunit [Methylobacterium populi BJ001]
 gi|179343760|gb|ACB79172.1| DNA polymerase III, alpha subunit [Methylobacterium populi BJ001]
          Length = 1173

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 513/1050 (48%), Positives = 705/1050 (67%), Gaps = 33/1050 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHSSYSLLEG + + +++   AAD+QPA+A+TDTNNLF ALEFS+KA   GIQPI
Sbjct: 10   FVHLHVHSSYSLLEGGVKVADLVKAAAADRQPALALTDTNNLFGALEFSEKAAGTGIQPI 69

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G QL +  +         + P     +IVLL     GY  L+ L SR +       +  
Sbjct: 70   AGLQLTVCFE---APDPMARMPQAGCANIVLLAQDETGYGNLLRLGSRAHFDGPLGAAPN 126

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            + +S L E   +GLI LTGG +GP+D +     +  A +RL   K  FG DRLYV +QRH
Sbjct: 127  LAVSAL-EGNVDGLIGLTGGLTGPLDTSLRAGRADQAARRLEVLKDAFGEDRLYVEIQRH 185

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D    E ++++LA  + L +VATN   F    DY+AHD L+A+A   +VS + R R+
Sbjct: 186  GLDDERAVERELLRLADGNGLGIVATNEPFFAKPGDYDAHDALLAIAEGRLVSDERRRRL 245

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRC-------SFILQVHAPILPRFIEKECD 301
            TP H    R+ M+ +F DLP+AL  +VEIA RC         IL   A +         +
Sbjct: 246  TPRHAFTTRAAMMELFRDLPDALSASVEIAMRCAVRARTRKPILPNFASVAAGEAPPMAE 305

Query: 302  DIQK-----------EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             + +           +E  EL  +A AGLE+RL Q   A G+  +DYR RL FEL+VI +
Sbjct: 306  ALAEAADAPVQAVAADEPTELCRQAEAGLELRLKQHGTAPGFSEEDYRARLKFELDVIVK 365

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            MKF GYFLIV+DFI+WAK ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFERFLNP
Sbjct: 366  MKFPGYFLIVSDFIKWAKDHDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFERFLNP 425

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFDIDFC + R+ VIRYVQ +YG  +V QIITFG+L A+  LRDVGR L+MPY 
Sbjct: 426  ERVSMPDFDIDFCVEGRERVIRYVQQRYGERQVGQIITFGTLLARGVLRDVGRVLEMPYG 485

Query: 471  QVDRLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            QVD+L KL+P +PA+PV+  QAI  + + ++A   +P V RL+EIS+KLEGL+RHASTHA
Sbjct: 486  QVDKLTKLVPQNPANPVTLAQAIEGEPKLQQAIEEEPIVARLIEISKKLEGLHRHASTHA 545

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            AG+VIGDRPL +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+   D L
Sbjct: 546  AGVVIGDRPLEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRCCTDLL 605

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
             QRG++VDL+ IP DD +TY  +    T+ +FQ+ES+GMR+AL  MQ D +EDIIALV+L
Sbjct: 606  KQRGIEVDLAQIPLDDKKTYEPMGRGETVAVFQVESAGMRKALCEMQADRLEDIIALVAL 665

Query: 650  YRPGPIDNIVVYNNRKNGKEK----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            YRPGP+ NI VY  RK G++         HP+++P+LKET G+I+YQEQVM++A++L+GY
Sbjct: 666  YRPGPMANIPVYCERKLGRDAGNEASWYSHPMLEPILKETFGIIVYQEQVMEVAKVLAGY 725

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L EAD+LRRAMGKKIK EMD Q++RF+ G  ++GI++  A  IF+LLAKFADYGFNKSH
Sbjct: 726  TLGEADMLRRAMGKKIKAEMDAQRDRFVKGCLESGIAQAKANEIFDLLAKFADYGFNKSH 785

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            AAAYA+++YQTA++K +YPVEFLAA+MTL++DN +K+ +F QDA++  I + PPSVNT  
Sbjct: 786  AAAYALVTYQTAYLKANYPVEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPSVNTSG 845

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            V F V + RI Y+LAAIKGVG +    I+ A  DKPF  L  F  R++ + +N+R LE+L
Sbjct: 846  VVFDVKEGRILYALAAIKGVGRSAVESIVAARGDKPFKDLACFARRLNPRHVNKRTLENL 905

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            + AGALDC    R +   +++ + K AQ   +  T+   ++F     +    + +     
Sbjct: 906  IAAGALDCIEPDRARAWAAVEPMMKMAQGAAEAETSGITDMFGGV-ASADVALRIPPHEF 964

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI---RLAAMVV 1002
               + + + E   +GF+ SGHPLD Y PIL K+ ++ + +    +R  +    R+AA V+
Sbjct: 965  WTHTDKLKRECDAIGFFLSGHPLDEYGPILEKLRVQSWADFCRAVRAGSASVGRIAASVL 1024

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + +++T+ G+++G V  S+    +EA  F
Sbjct: 1025 DRSERRTKSGNKLGIVILSDQTGHFEAIIF 1054


>gi|258543019|ref|YP_003188452.1| DNA polymerase III subunit alpha [Acetobacter pasteurianus IFO
            3283-01]
 gi|256634097|dbj|BAI00073.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-01]
 gi|256637157|dbj|BAI03126.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-03]
 gi|256640209|dbj|BAI06171.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-07]
 gi|256643266|dbj|BAI09221.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-22]
 gi|256646321|dbj|BAI12269.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-26]
 gi|256649374|dbj|BAI15315.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-32]
 gi|256652360|dbj|BAI18294.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-01-42C]
 gi|256655418|dbj|BAI21345.1| DNA polymerase III alpha subunit [Acetobacter pasteurianus IFO
            3283-12]
          Length = 1139

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 488/1037 (47%), Positives = 666/1037 (64%), Gaps = 27/1037 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  F+HL+VHS+YSL +GA+ + +I         PA+ I D+ NLF ALEFSQ    
Sbjct: 1    MSYA-DFIHLRVHSAYSLSQGAIRVPDIAGLAKEMYMPAVGIADSGNLFGALEFSQYCTK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +GIQPIIG Q+         +  +   P      +VLL     G   L  L S  +    
Sbjct: 60   SGIQPIIGSQI--------GLPARNDKPGAPAEPVVLLAQNEAGLANLQFLSSAGFQNSD 111

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  + L  L E   EGL++LTGGS GP+ +      ++ AEK L    + FGDRL V
Sbjct: 112  P-ADPFVSLDLLCEK-AEGLLLLTGGSRGPLFQMLAEGQTEDAEKWLARVHEAFGDRLIV 169

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L RH    ++  E  V+ LA    LPLVATN   F + E YEA D L+ +A    +++K
Sbjct: 170  ELHRHGLAIEKAVEPGVLTLADRFGLPLVATNECFFPTPEMYEAQDALLCIAQGRTMAEK 229

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR RVTP+H+ K    M ++F+DLP+A +NT+EIARRC+  ++   P+LP   +      
Sbjct: 230  DRFRVTPEHWFKPPEMMRALFADLPDACDNTLEIARRCAIKVETRKPLLPVCPKVR---E 286

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E+  LR  A  GLE R++ G        + Y++RL FEL++I++M F GYF+IVADF
Sbjct: 287  GATEDETLRAMAWEGLERRMS-GMKLDAETIEKYKERLRFELDIISKMGFPGYFMIVADF 345

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK + IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFC
Sbjct: 346  IQWAKAHGIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFC 405

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QDRRDEVI YV+ +YG +RVAQIITFG LQA+AA+RDVGR L +PY  V+R+ +LIPN+P
Sbjct: 406  QDRRDEVIAYVRREYGADRVAQIITFGKLQARAAVRDVGRVLGLPYGMVNRVAELIPNNP 465

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A PV+  +AIA + + +E R  D ++ RLLEI+Q+LEGL+RHASTHAAG+VIGDRPL QL
Sbjct: 466  AKPVTLKEAIAGEPKLQEMRDNDEALRRLLEIAQQLEGLFRHASTHAAGVVIGDRPLVQL 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD +SD  VTQ+NMK++E+AGL+KFDFLGL TLT+L++ +DF+ + G  VDLS IP
Sbjct: 526  VPLYRDPKSDTLVTQYNMKFVEQAGLVKFDFLGLTTLTILKRGVDFIRRMGKDVDLSHIP 585

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD +TY +L    T G+FQ E +GMR  L+ M+P  IED+IA V+LYRPGP+ NI  Y 
Sbjct: 586  LDDPKTYEMLGRGDTAGVFQFEGAGMRDVLKQMRPTRIEDLIAAVALYRPGPMANIPDYC 645

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G E     H  I  +L+ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+
Sbjct: 646  RRKHG-EAWEPPHEEIRDILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIR 704

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EMD Q+E F  GA+K GI +  AV +F+L+AKFADYGFNKSHAAAYA +SYQTAWMK +
Sbjct: 705  SEMDHQREIFTEGATKRGIDRDKAVEVFDLMAKFADYGFNKSHAAAYAFVSYQTAWMKAN 764

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYY 837
            +PV FLAA M+L  +  EK+    Q+A + +I ++PP++N    DF V +       I Y
Sbjct: 765  HPVAFLAACMSLARERTEKLAALRQEAERMHIAVLPPNINKSEADFSVEEQPDGTYAIRY 824

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            +LAAIK VG      ++EA  +KPF +L DF  R+D K +NR  LE+L  AGA +C   +
Sbjct: 825  ALAAIKKVGYGAMESLVEARGEKPFKNLADFAIRIDPKHINRMQLENLAKAGAFECIDKN 884

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R ++ +S D I + A    +   +    +F        + + L +        R   E  
Sbjct: 885  RARVFRSADVILRRAHSQAQEAASGQIGLFGGPGEV--EPLRLVEGHDWPEFERLAMEAE 942

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRI 1015
             +GF+ + HPLD Y  +LR++G+    + +      G  +++A  VV K+++ TR G+++
Sbjct: 943  AIGFHMTAHPLDAYGSVLRRLGVTRTSQLLTAAELGGGRVKIAGCVVDKKERPTRTGNKM 1002

Query: 1016 GWVTFSEPAKEYEANFF 1032
             WV  S+ +   E   F
Sbjct: 1003 AWVRLSDASGGCEVTVF 1019


>gi|293192339|ref|ZP_06609450.1| DNA polymerase III, alpha subunit [Actinomyces odontolyticus F0309]
 gi|292820254|gb|EFF79248.1| DNA polymerase III, alpha subunit [Actinomyces odontolyticus F0309]
          Length = 1180

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/1064 (32%), Positives = 551/1064 (51%), Gaps = 46/1064 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL  HS YS+L+GA     + ++ A   QPAI +TD   LF A +F      AG+
Sbjct: 2    ADSFVHLHNHSEYSMLDGAAKTKAMAEEAARLGQPAIGLTDHGYLFGAFDFYTNCKNAGV 61

Query: 68   QPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            +PIIG +  +                        +   +   + L+     G   L  L 
Sbjct: 62   KPIIGLEAYVTPGTSRFDRQKVLWGEPWQRADDVSAGGSYNHLTLVAYNTTGMHNLFRLG 121

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S      Q  +  R     L +   EGLI+ TG  SG +           A       + 
Sbjct: 122  SYASTDGQFGKWPRADKELLSQFH-EGLIVFTGCPSGAVQTRLRLGQWDEAVAEAAELRD 180

Query: 177  LFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            +FG +  YV +  H    +R    QV+++A     PLVATN++ ++  ED +  D L+ +
Sbjct: 181  IFGAENFYVEVMDHGIDIERRTHQQVLEIAKLMNAPLVATNDAHYVKREDRKIQDALLCI 240

Query: 235  AHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
               + ++  DR +   D +Y+++  EM +++S+LP A ++T+EIA RC            
Sbjct: 241  NSGSRINDPDRFKFDGDGYYIRSSDEMRALWSELPGACDSTLEIAERCDVHFTTTKEGAN 300

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             ++        +++ +    +   GL  R   G         D R++  +E +VI +M F
Sbjct: 301  -YMPDFPVPEGEDKTSWFIKEVERGLRDRFPNG------IPDDVRKQAQYEEDVIIKMGF 353

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFL VAD+I WAK   I VGPGRGSGAGS+ AYAL IT+++PL   L+FERFLNP+R+
Sbjct: 354  PGYFLTVADYINWAKSQGIRVGPGRGSGAGSMVAYALKITELNPLEHGLIFERFLNPERI 413

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPDFD+DF + RRDEVI YV+ KYG +R++Q++T+G+++ K AL+D  R L   +   +
Sbjct: 414  SMPDFDVDFDERRRDEVIAYVKRKYGEDRISQVVTYGTIKTKQALKDSARILGKDFKVGE 473

Query: 474  RLCKL-IPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRH 524
            +L K   P      +++  I D+          FR+    +P    +++ +  LEGL R 
Sbjct: 474  QLTKALPPAIMGKDITVHGIFDEKDKRYAEASEFRKFYEENPDTHEVVQYALGLEGLTRQ 533

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HA  +++    L+ ++P+ +  +    +TQF+    E  GL+K DFLGL+ LT++  
Sbjct: 534  WGVHACAVIMSSHTLTDIIPIMKRPQDGAIITQFDYPTCETLGLLKMDFLGLRNLTVVSD 593

Query: 585  SLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +L+ +A       DL  + FDD +TY LL    TLG+FQL+  GMR  L+ M+PD  EDI
Sbjct: 594  ALENIALNGKPDPDLDHLTFDDKKTYELLGRGDTLGVFQLDGGGMRDLLKLMKPDNFEDI 653

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQ 697
             A+ +LYRPGP+  ++   Y  RKNG+++I  IHP +   L++    T G+I+YQEQVMQ
Sbjct: 654  SAVGALYRPGPMGANSHTNYALRKNGRQEITPIHPELAEPLEDILGTTFGLIVYQEQVMQ 713

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IAQ L+GYSL +AD+LR+AMGKK KE +D+Q + F  G   NG S+     +++++  F+
Sbjct: 714  IAQKLAGYSLGQADILRKAMGKKKKEVLDQQFKGFRQGMVANGYSEESIKALWDVVVPFS 773

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             Y FNK+H+AAY ++SY TA++K ++P E++AA +T   DN ++   +  + R  +I ++
Sbjct: 774  AYAFNKAHSAAYGLVSYWTAFLKANFPTEYMAALLTSTKDNKDRRALYLAECRHMDITVL 833

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876
            PP VN    +F      I + L AI+ VG      I+E  A+   F S +DF  +V    
Sbjct: 834  PPDVNASMGNFAPDGEAIRFGLNAIQNVGGPVVDAIVETRAEKGRFASFQDFLDKVPQVV 893

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             N+R ++SL+ AGA D  G++R  LL   D        V++N      ++F         
Sbjct: 894  CNKRTIQSLIRAGAFDSMGHTRRALLARCDEAVDAIIDVKRNEAIGQFDLFGALGEDEDT 953

Query: 937  ----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---AT 989
                 I +      +   +   E+ +LG Y S HPL   +  L +       + V     
Sbjct: 954  GSGLTIDIPDLPEFDRKTKLAAEREMLGLYVSDHPLRGVEAALARHQDYEIAQVVGSDGA 1013

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +    +++A ++     K T++G+     T  + +   +  FFP
Sbjct: 1014 MADRIVKIAGLISGVTTKVTKQGNAWAIATIEDMSGSVDVLFFP 1057


>gi|34558271|ref|NP_908086.1| DNA polymerase III subunit alpha [Wolinella succinogenes DSM 1740]
 gi|34483990|emb|CAE10986.1| DNA POLYMERASE III ALPHA SUBUNIT [Wolinella succinogenes]
          Length = 1178

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1058 (35%), Positives = 607/1058 (57%), Gaps = 46/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            + HL +H+ YSLL+GA  + ++  K+      A+++TD  N+F A++F       G++PI
Sbjct: 5    YTHLHLHTEYSLLDGANKIKSLAKKVKQLGMSAVSMTDHGNMFGAIDFYTAMKKEGVKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L     G         + L      GYQ L+ L S  ++ +      R
Sbjct: 65   IGIEAYLHNSDEL-----GDKSTKQRFHLCLYAKNEVGYQNLMYLSSMSFI-EGFYYYPR 118

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN----------SSQVAEKRLLTFKKLFGD 180
            I    L+E  +EGL+  +    G +      N            + A++  L ++++FG+
Sbjct: 119  INKKLLRE-HSEGLVCSSACLQGEVQWHLNTNSERNVKFGAKGYERAKEVALEYREIFGE 177

Query: 181  RLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ + RH   D+    + +++L+    + ++ATN++ +  +ED EAH+  M +A +  
Sbjct: 178  DFYLEIMRHGIGDQLFIDEPLLRLSLETGIKIIATNDTHYQLQEDAEAHEAFMCIAMNKN 237

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV-----HAPILP 293
             +  +R R +  + YLK+  +M  +F+D+PEAL NT EI  +C+  L +           
Sbjct: 238  FNDPNRLRHSVQEFYLKSPEQMEELFADIPEALLNTQEIVEKCNLELHLGNPTPPTFKFT 297

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
                K        +++    K   GL+ RL    +      ++YR+RL+ E+ +I +MKF
Sbjct: 298  EDYAKAEGLDFHTDDDYFAYKCREGLKKRLK---LVPETRHEEYRERLEREIEIINKMKF 354

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GY LIV DF++ AK   IPVGPGRGS AGS+ A+ L ITDIDPL+++LLFERFLNP+R+
Sbjct: 355  PGYMLIVWDFVRAAKDRGIPVGPGRGSAAGSLVAFCLEITDIDPLKYALLFERFLNPERV 414

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPD D+DFCQ RR E++ YV NKYG   VAQ+ITFG+LQAK  +RDV R + MPY + D
Sbjct: 415  SMPDIDMDFCQSRRGEILDYVVNKYGRYNVAQVITFGTLQAKGVIRDVARVMGMPYGEAD 474

Query: 474  RLCKLIPNDPAHPV-----------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             + KLIP++    +              A   + + +E   ++    ++ E +  LEGL 
Sbjct: 475  AMAKLIPDELGITLNGKGKEGTPDYKAGAFQKEPKIKELIDSNKEARKVWEFALLLEGLK 534

Query: 523  RHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
            R+A THAA +VI   + L    P+Y+    +   TQ++MK++E   LIKFDFLGLKTLT+
Sbjct: 535  RNAGTHAAAVVIDSQKELWHKAPLYKPSGDETIATQYSMKYLEDVDLIKFDFLGLKTLTV 594

Query: 582  LQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            ++ ++D +  R   ++D + +  +D   Y  + +  T+G+FQ+ES GM+   + ++P   
Sbjct: 595  IRGAMDMIKVRYSKEIDFNALDVNDPAVYETIQSGNTIGLFQVESKGMQDLNKRLKPTTF 654

Query: 641  EDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            EDIIA+++LYRPGP+++ +   + +RK+GK  I+   P ++P+LK T GVI+YQEQVMQI
Sbjct: 655  EDIIAVLALYRPGPMESGMLDDFIDRKHGKAPILYAFPELEPILKPTYGVIVYQEQVMQI 714

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
             Q + G+SL  AD++RRAMGKKIKEEMD+ K  F +GA K G  +  +  +F+L+ KFA 
Sbjct: 715  VQTIGGFSLGGADLVRRAMGKKIKEEMDRLKGEFANGAEKRGFDRQKSEELFDLIVKFAG 774

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            YGFNKSH+AAYA++++QT ++KT+YP EF+A+ +T E DN +K+ K+  +A++  I+++P
Sbjct: 775  YGFNKSHSAAYAMVTFQTTYLKTYYPHEFMASLLTSEQDNTDKVVKYVDEAKRLGIKVLP 834

Query: 819  PSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
            P ++   ++F V    G+  I + L AIKG G      I+E  A  PF++LEDF  R+D+
Sbjct: 835  PDISRSLLEFSVAEIEGEKVILFGLGAIKGAGEIALSKILEERAKAPFENLEDFLGRIDA 894

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            +K+N++ LESL+ +G++  FGYSR  LL+ ++ I + ++  E+ +     ++F   +   
Sbjct: 895  QKVNKKALESLIKSGSMVGFGYSRRALLEQIEAINEASKESERAKRMAENSLFGDSEEMI 954

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
              ++ +E F         E E+  LGFY SGHPLD ++P L ++      +      G+ 
Sbjct: 955  VARVEIENFEEYPLKRLLELEKETLGFYVSGHPLDDFRPELAEVNYTLSSQMEQIEDGSA 1014

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                  V     K ++KG+R G +   +     E   F
Sbjct: 1015 ALFIGKVEEVTTKFSKKGNRFGILNILDLHGNIEMMVF 1052


>gi|183222285|ref|YP_001840281.1| DNA polymerase III subunit alpha [Leptospira biflexa serovar Patoc
            strain 'Patoc 1 (Paris)']
 gi|189912335|ref|YP_001963890.1| DNA-directed DNA polymerase subunit alpha [Leptospira biflexa serovar
            Patoc strain 'Patoc 1 (Ames)']
 gi|167777011|gb|ABZ95312.1| DNA-directed DNA polymerase, alpha subunit [Leptospira biflexa
            serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167780707|gb|ABZ99005.1| DNA polymerase III alpha subunit [Leptospira biflexa serovar Patoc
            strain 'Patoc 1 (Paris)']
          Length = 1173

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1044 (34%), Positives = 571/1044 (54%), Gaps = 31/1044 (2%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            Q +E    F HL +H++YS+L+GA+ +++++ ++      ++AITD  N++ A+EF ++A
Sbjct: 7    QAME---DFAHLHLHTTYSMLDGAIRISDLMKRVKELGMSSVAITDHGNMYGAIEFYKEA 63

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                ++PIIGC+  +        T   +        I+LL     GYQ +I+L SR +  
Sbjct: 64   VKHEVKPIIGCEFYVTP-SRSAETELDEIADGGAYHIILLCKNEVGYQNIIKLASRSFT- 121

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDR 181
            +   +  RI    L E  +EGL+ LT   +G ++R         A        ++F  + 
Sbjct: 122  EGFYRKPRIDYDLL-ERHSEGLVCLTACLAGEVNRKILEGKEDKAYALAGRLHEIFRKED 180

Query: 182  LYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ +Q H   ++      V+  +    +PLV TN+S FL+++D EA D+L+ +     +
Sbjct: 181  FYLEIQDHGIPEQKTVAEAVIGFSKRTGIPLVLTNDSHFLTKDDREAQDILLRIGMRKNI 240

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              + R     + Y+K+  EM ++F +  +A  NT+ I  +CS   Q   P+LP F     
Sbjct: 241  DDEMRFGFNQNFYVKSPEEMKTLFPNHLDAYYNTLAIRDKCSLNFQFGNPLLPPFEVPPG 300

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D     ++ L      G++                 ++R +FE+  I  M F+GYFLIV
Sbjct: 301  FDT----DSYLEKLVWEGIQE-------KYKEITPIVKERTEFEMQTIRNMHFAGYFLIV 349

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D+I +A++  IPVGPGRGS AGS+ AYAL IT++DP+R++LLFERFLNPDR  MPD D 
Sbjct: 350  QDYINFARRTGIPVGPGRGSAAGSIIAYALGITNVDPIRYNLLFERFLNPDRKDMPDIDT 409

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC +RR+EVI Y++++YG  RV QIITFGSL AKAA++DV R   +P+S+V+ + KL P
Sbjct: 410  DFCVERREEVINYIKHRYGENRVGQIITFGSLAAKAAIKDVARVFNVPFSEVNEMSKLFP 469

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                  +  +A+      R+         ++  I+QKLEG YR    HAAG+VI    L 
Sbjct: 470  KKLGITI-QEAVETSKDLRDIAEKSELNKKVFSIAQKLEGNYRQVGRHAAGVVIAPTALE 528

Query: 541  QLVPM----YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
            ++VP+             VTQ++    E+ GLIK D LGLK LT +  +   + +R    
Sbjct: 529  EIVPLSTVSEPGRDGRSIVTQYDKNMSEQVGLIKMDILGLKNLTTIHHATKLIEKRHGIL 588

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLE-SSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +DL  IP DD  T+ LL     LGIFQL+ SSG+R      Q    E+I AL++LYRPGP
Sbjct: 589  IDLDKIPLDDPATFSLLRKANVLGIFQLDSSSGIRDLFAKAQVQKFEEIAALLALYRPGP 648

Query: 655  IDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            + + +   Y +RKNGK+K+V  H  +  +L ET GVI+YQEQVM I++++ G+S+ ++DV
Sbjct: 649  MGSGMLDDYLDRKNGKKKVVFPHESLAEVLGETYGVIVYQEQVMGISRIMGGFSVGDSDV 708

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LR+AM KK K ++   KE+F+ GA +  I++ +A  +FE L KF +YGFNKSH+ AYA +
Sbjct: 709  LRKAMAKKDKSKLPALKEKFVKGAIEKKINEKLATELFEQLEKFGEYGFNKSHSVAYAFV 768

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +YQTA++K +Y +E+L A ++ +   +  + K+  +A++  I+I+ P V    + F++ D
Sbjct: 769  TYQTAFLKANYSIEYLTALLSGDHSKITDVVKYINNAKEMGIRILGPDVKESGISFEITD 828

Query: 833  N-RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            +  + + L++IKGVG   A++I+    +   +  L DF  ++D++  N++VLESL   GA
Sbjct: 829  DTTVRFGLSSIKGVGELAAQNIIHNRNELGGYKQLSDFTKKLDTRLANKKVLESLAQGGA 888

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-VENSS 949
             D FGYSR  + +S D I  YA   +        ++F    G   + + L K     N  
Sbjct: 889  FDSFGYSRKTISESTDIILNYANKKQAEEKEGQFSLFGGVNGGSEENLNLPKDGIEWNDD 948

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 E+   G Y SGHPLD +   L+ +     E        + + +A ++  K  K T
Sbjct: 949  ELLRREKETTGLYLSGHPLDKFTEQLKSLNPTSIENLEEVRPKSKVEIAGVLSKKVVKLT 1008

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
            +K          +   E E   FP
Sbjct: 1009 KKKEEFVNFMLEDQTGEIECVAFP 1032


>gi|284008505|emb|CBA75016.1| DNA polymerase III subunit alpha [Arsenophonus nasoniae]
          Length = 1160

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1049 (39%), Positives = 611/1049 (58%), Gaps = 39/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL+VHS YS+++G   +N +++++A    PA+AITD  NL+  ++F   A A
Sbjct: 1    MAE-PRFIHLRVHSDYSIIDGLAKINPLVNRVAELGMPALAITDFTNLYGLIKFYGAAHA 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG    ++           +     V  + +L    +GY  L  L+S  Y    
Sbjct: 60   EGIKPIIGADFYLE----------SELLGDEVAHLTILARDNKGYHNLTLLISAAYQKGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL     EGL++L+GG  G + +     + Q+ E+ L  ++  F +  Y+
Sbjct: 110  GAIGPTIKREWLV-THKEGLLLLSGGCLGDVGKFLLRGNQQLVEQCLDFYQTHFPNNYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        VQLA    +P+VATNN  F++ +D+ AH++ +A+     ++ +
Sbjct: 169  ELVRTGRPDEESYLHAAVQLAAEKGVPVVATNNVRFINSDDFAAHEIRVAIHDGFTLADQ 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  YL++  EMV +F+D+PEALEN+VEIA+RC+ ++++       +   +   
Sbjct: 229  KRPKNYSPQQYLRSEQEMVELFADIPEALENSVEIAKRCNVMMRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L   A AGLE     L      +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMATEDFLIKCAKAGLEERLQFLYPNEKERAERRIEYDERLDTELRVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD+VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDQVIEHVAQMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P+DP   +    +  + + +E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PSDPGMTLEKAFVV-EPQLQEIYDADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +   P+Y D     P+TQF+   +E AGL+KFDFLGL+TLT++  +LD + QR  K +L+
Sbjct: 523  TDFAPLYCDPEGQNPLTQFDKNDVEYAGLVKFDFLGLRTLTIISWALDMINQRRAKQNLA 582

Query: 600  L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                  IP  D + + LL    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIATIPLTDQKCFDLLQRAETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +         +   H  +  +L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREAISYPDVEWQHASLQTVLEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM +Q+  F +GA KNGI   + + IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKKPEEMAQQRSIFEAGAVKNGIDGELGMKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+KTHYP EF+AA MT +MDN EK+     +  +  ++++PP +N+    
Sbjct: 763  AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVSLVDECWRMGLKVLPPDINSGLYH 822

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I+E+      F  + D C+RVD+KKLNRRV+E L
Sbjct: 823  FHVNDRGEIVYGIGAIKGVGEGPIEAIIESRQKGGYFKEIFDLCARVDTKKLNRRVMEKL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL++  K A    K       ++F    +     + +    +
Sbjct: 883  IMSGAFDHLGPHRAALMSSLEDALKAADQHAKAEAIGQTDMFGVLAEAPEQVEQSYASVA 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVS 1003
                 +  E E+  LG Y +GHP+  Y   + +       ++   T RG    +  + ++
Sbjct: 943  KWPEHLILEGERETLGLYLTGHPITAYLSEIERYTSGLRLKDVNPTPRGQMSTVVGLALT 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   +   F
Sbjct: 1003 AKVVTTKRGNRIGICTLDDRSGRLDIMLF 1031


>gi|237747737|ref|ZP_04578217.1| DNA polymerase III alpha subunit [Oxalobacter formigenes OXCC13]
 gi|229379099|gb|EEO29190.1| DNA polymerase III alpha subunit [Oxalobacter formigenes OXCC13]
          Length = 1153

 Score =  748 bits (1930), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1053 (38%), Positives = 604/1053 (57%), Gaps = 48/1053 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL++HS YS+++G + + +++   A D QPA+A+TD  NLF  ++F + A  
Sbjct: 1    MNNT-RFVHLRLHSEYSIVDGLVRIEDVIAAAAKDGQPAMALTDLANLFGLIKFYKAARK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PI GC + I    + +              ++LLV    GY  L EL+SR +L +Q
Sbjct: 60   KGVKPIGGCDVWITNDADREKP----------SRLLLLVKDRTGYLNLCELLSRSWLENQ 109

Query: 125  GKQSVRICLSWLQEIGTE----GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
             +    I + WL+E+  +    GLI L+G   G I  AF  +    AEK    +  +F D
Sbjct: 110  WRGRAEIRIEWLEELSKKTGDMGLIALSGAKQGDIGMAFEASGFDNAEKCARRWASIFPD 169

Query: 181  RLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
              Y+ +QR  H G ++Y     V+LA   +LP+VAT+   FLS+E++ AH+    ++   
Sbjct: 170  NFYIEIQRTGHSGMEQYLRHA-VELADKLQLPVVATHPVQFLSQEEFAAHEARTCISEGE 228

Query: 239  VVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            ++S K R        Y   + EM  +F+DLP A++N+VEIARRC+ +L++    LP F  
Sbjct: 229  ILSNKRRAHNFNERQYFYTQEEMAELFADLPGAIQNSVEIARRCNLVLELGHHKLPEFPT 288

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFS 354
             +        +  L ++A  GLE RL +    +         Y +RLD+E+  I  M FS
Sbjct: 289  PDGM----TLDEFLTSEAKHGLEKRLEELFPDEEERKTQRPRYDERLDYEIGTIINMGFS 344

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIVADFI+WAK N +PVGPGRGSGAGS+ AY+L IT++DPL ++L+FERFLNP+R+S
Sbjct: 345  GYFLIVADFIRWAKNNGVPVGPGRGSGAGSLVAYSLLITNLDPLAYNLIFERFLNPERVS 404

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFD+DFCQ  RD+VI+YV+++YG + V+QI TFG++ AKAA+RDVGR L + Y+  D 
Sbjct: 405  MPDFDVDFCQHGRDKVIQYVKDRYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFCDG 464

Query: 475  LCKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            + KLIP  P   V++     ++    E   ++  V +LL +++++EG+ R+   HA G++
Sbjct: 465  ISKLIPFKPGKQVTIAEAKKEEPLLAEREESEEEVKQLLALAEQVEGITRNVGMHAGGVL 524

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-- 591
            I    L+   P+Y        V+ F+   +E  GL+KFDFLGL TLT+L  ++ ++ Q  
Sbjct: 525  IAPGKLTDFCPLYTQGGEAGVVSHFDKSDVEAVGLVKFDFLGLTTLTILDLAVKYIRQLD 584

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  +L  IP DD  TY LL    T+ +FQLES GM+  L+  +PD  EDIIALV+LY
Sbjct: 585  PEMANFNLDTIPLDDKATYDLLIKAKTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+D I  +  RK+G EK          +L ET G+++YQEQVMQ+AQ++ GY+L  A
Sbjct: 645  RPGPMDLIPDFCRRKHG-EKFEYPDERTKGILSETYGIMVYQEQVMQMAQVIGGYTLGGA 703

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK   EM + ++ F  GA+KN +++  A  IF+L+ KFA YGFNKSHAAAYA
Sbjct: 704  DLLRRAMGKKDANEMARHRQIFRDGAAKNDLTEAKADEIFDLMEKFAGYGFNKSHAAAYA 763

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFK 829
            ++SYQTA++K H+   F+AA+M+L MD+ +K+K   +DA +   + I+PP +N     F 
Sbjct: 764  LLSYQTAFLKQHHAAAFMAANMSLAMDDTDKVKVLVEDAVEVCGLTILPPDINHSEYYFT 823

Query: 830  VGDNR----------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
                           I Y L A+KG G +    I++A  ++PF  L DFC RVD  ++NR
Sbjct: 824  PVGEAPSVSKKPVSAIRYGLGAVKGSGESAIEAIVKARKERPFTDLFDFCMRVDKHQINR 883

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            R +ESL+ AGA DCF   R  LL S+D         +   +    ++F  E+   +  + 
Sbjct: 884  RTIESLIRAGAFDCFNVDRAVLLASVD--LAIEAAEQAEASANQVSLFGEEEAVIN-TVE 940

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
              +        +   E+ VLGF  SGH  + Y    R+       E   +     +  A 
Sbjct: 941  YVQVPHWTEKHKLTEEKGVLGFCLSGHLFNAYAAEARQFAKTRIIELEPSRDPKWV--AG 998

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++   + + T++G  +  VT  + +   E   F
Sbjct: 999  VISGNRTQMTQRGKMM-IVTLDDGSGTIEVTIF 1030


>gi|227545586|ref|ZP_03975635.1| DNA-directed DNA polymerase [Bifidobacterium longum subsp. infantis
            ATCC 55813]
 gi|227213989|gb|EEI81826.1| DNA-directed DNA polymerase [Bifidobacterium longum subsp. infantis
            ATCC 55813]
 gi|291516113|emb|CBK69729.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
            longum F8]
          Length = 1189

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/1075 (32%), Positives = 548/1075 (50%), Gaps = 53/1075 (4%)

Query: 1    LTQYLEK-SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
            + + +     +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E  
Sbjct: 1    MVERMADYGNNFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMY 60

Query: 60   QKACAAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                A G++PIIG +  +  +                     +    +  + +     EG
Sbjct: 61   TNCVANGVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEG 120

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
               LI+  S   L  +  +  R+    L    ++G+I  +G  SG I         + A 
Sbjct: 121  LVNLIKASSVANLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFEEAL 179

Query: 169  KRLLTFKKLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            +    F+ +FG D  ++ L  H    +    + ++ +A   + PL+ATN+S ++  ED +
Sbjct: 180  RAAGEFQDIFGKDNFFIELMDHGLTIETQVTNDLLTIAKKLDAPLLATNDSHYVHAEDAQ 239

Query: 227  AHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            A D ++ +   + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ + 
Sbjct: 240  AQDAMLCINSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMF 299

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
              H            +    +E +    K   GLE R        G    D  ++ D+E 
Sbjct: 300  DDHEDGAFMPKFPCPEG--WDETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYEC 351

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             VI +M+F GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FE
Sbjct: 352  GVICQMQFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFE 411

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+S+PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +
Sbjct: 412  RFLNPERVSLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIM 471

Query: 466  QMPYSQVDRLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEIS 515
               +S  +++ K +P        +SL  I D +         FRE   +DP   R+ E +
Sbjct: 472  GYEFSVGEKITKALPPAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEA 531

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + +EGL R    HA   ++G  P++   P+  +       T F     E  GL+K DFLG
Sbjct: 532  KGIEGLIRQTGVHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLG 590

Query: 576  LKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L  LT++  +L  +       +D + IP DD ETY L++   TLG+FQL+S GMR  L+ 
Sbjct: 591  LSNLTIIHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKT 650

Query: 635  MQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGV 688
            ++PD   DI AL++LYRPGP+       Y  RKNG +KI  IHP ++  LK+    T G+
Sbjct: 651  LKPDNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGL 710

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            IIYQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  
Sbjct: 711  IIYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQA 770

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +
Sbjct: 771  VWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGE 830

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLE 866
            AR+  IQ++ P VN    ++    + + + L AI+ VG      I+         F +  
Sbjct: 831  ARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFM 890

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF  RV    LNRR++ESL+ AGA D    +R  LL   +        +++ +     ++
Sbjct: 891  DFIRRVPLTALNRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDL 950

Query: 927  FAHEKGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
            F+  +   ++      +T+      +   +   E+ +LG Y S HPL   + IL  +   
Sbjct: 951  FSDAEDGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREM 1010

Query: 982  GYEESVATIR----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 V   +    G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1011 SIAHLVDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065


>gi|239620845|ref|ZP_04663876.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp.
            infantis CCUG 52486]
 gi|239516421|gb|EEQ56288.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp.
            infantis CCUG 52486]
          Length = 1189

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/1075 (32%), Positives = 545/1075 (50%), Gaps = 53/1075 (4%)

Query: 1    LTQYLEK-SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
            + + +     +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E  
Sbjct: 1    MVERMADYGNNFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMY 60

Query: 60   QKACAAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                A G++PIIG +  +  +                     +    +  + +     EG
Sbjct: 61   TNCVANGVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEG 120

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
               LI+  S   L  +  +  R+    L    ++G+I  +G  SG I           A 
Sbjct: 121  LVNLIKASSVANLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEAL 179

Query: 169  KRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            +    F+ +FG D  ++ L  H    +      ++ +A     PL+ATN+S ++  ED +
Sbjct: 180  RAAGEFQDIFGKDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQ 239

Query: 227  AHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            A D ++ +   + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ + 
Sbjct: 240  AQDAMLCINSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMF 299

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
              H            +    +E +    K   GLE R        G    D  ++ D+E 
Sbjct: 300  DDHEDGAFMPKFPCPEG--WDETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYEC 351

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             VI +M+F GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FE
Sbjct: 352  GVICQMQFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFE 411

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+S+PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +
Sbjct: 412  RFLNPERVSLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIM 471

Query: 466  QMPYSQVDRLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEIS 515
               +S  +++ K +P        +SL  I D +         FRE   +DP   R+ E +
Sbjct: 472  GYEFSVGEKITKALPPAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDTKRITEEA 531

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + +EGL R    HA   ++G  P++   P+  +       T F     E  GL+K DFLG
Sbjct: 532  KGIEGLIRQTGVHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLG 590

Query: 576  LKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L  LT++  +L  +       +D + IP DD ETY L++   TLG+FQL+S GMR  L+ 
Sbjct: 591  LSNLTIIHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKT 650

Query: 635  MQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGV 688
            ++PD   DI AL++LYRPGP+       Y  RKNG +KI  IHP ++  LK+    T G+
Sbjct: 651  LKPDNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGL 710

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            IIYQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  
Sbjct: 711  IIYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQA 770

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +
Sbjct: 771  VWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGE 830

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLE 866
            AR+  IQ++ P VN    ++    + + + L AI+ VG      I+         F +  
Sbjct: 831  ARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFM 890

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF  RV    LNRR++ESL+ AGA D    +R  LL   +        +++ +     ++
Sbjct: 891  DFIRRVPLTALNRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDL 950

Query: 927  FAHEKGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
            F+  +   ++      +T+      +   +   E+ +LG Y S HPL   + IL  +   
Sbjct: 951  FSDAEDGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREM 1010

Query: 982  GYEESVATIR----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 V   +    G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1011 SIAHLVDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065


>gi|312883823|ref|ZP_07743542.1| DNA polymerase III subunit alpha [Vibrio caribbenthicus ATCC
            BAA-2122]
 gi|309368572|gb|EFP96105.1| DNA polymerase III subunit alpha [Vibrio caribbenthicus ATCC
            BAA-2122]
          Length = 1143

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1031 (39%), Positives = 602/1031 (58%), Gaps = 37/1031 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G   +  ++ K+A    PA+A+TD  NL   ++F   A ++G++PIIG         
Sbjct: 1    MVDGLSKVPALVKKVAEMGMPAVALTDFTNLCGLVKFYGSAHSSGVKPIIGADF------ 54

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q +     +  I +L +   GY+ L  L+S+ YL    +    I   WL E+ +
Sbjct: 55   ----LMQSEEFGEELTRITVLAADNLGYKNLTLLISKAYLRGHIQHHPVIDKKWLAEL-S 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-GYDRYRESQV 200
            +GLI+L+GG SG I +A    +  VA + +  +K+ F DR Y+ L R     +       
Sbjct: 110  QGLIVLSGGRSGEIGKALLKGNQHVASQCVDFYKEYFPDRFYLELTRTGRADEEAYLHFA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            ++LA   +LP+VATN  + L +  +EAH++ +A+     +    RP+  +   YL++  E
Sbjct: 170  LELAEITQLPVVATNEVVILDDSFFEAHEIRVAIHDGYTLEDPRRPKNYSSQQYLRSEQE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEALEN+VEIA+RC+  +++                  EE   L  K+  GL
Sbjct: 230  MCELFSDIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPTDGMEETEFLIKKSQQGL 284

Query: 320  EVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL          AQ   +Y +RL  EL VI  M F GYFLIV +FIQW+K N IPVGP
Sbjct: 285  EERLEFLFPDPNTRAQRRPEYDERLQVELEVINNMGFPGYFLIVMEFIQWSKDNAIPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V  
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L   +  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHGFGFVDRISKLVPPDPGMTLE-KAFQAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
               E    D  +  L+++ + LEG  R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  ALPELYNNDEEIKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L  +  R      + V +  IP  D  +++L
Sbjct: 524  QFDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKLPVVIESIPLQDQASFNL 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584  LQNAETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             I        H  +   L  T G+I+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EE
Sbjct: 644  AISYPDETWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNG++  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTHYP
Sbjct: 704  MAKQRGTFKEGAEKNGVNGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V +   I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECIRMKLKVLPPDINSGVYRFNVDETGAIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+ A      F  L DFC+R+D KK+N+RV+E L++AGALD  G  R  ++
Sbjct: 824  GVGEGPIEAILTAREKGGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHRAAMM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL++  K A    +  +    ++F    +     +    + +     V  E E+  LG 
Sbjct: 884  ASLNDAVKAASQHHQAESFGQTDLFGVLTQAPDEIEKKYTQVAPWPEKVWLEGERDTLGL 943

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y +GHP++ Y   L K      +++  T R  ++ ++ +V++ +   T++GSRIG +T  
Sbjct: 944  YLTGHPINAYLRELTKYTSCRLKDATPTRRDQSVTVSGLVIAARVMTTKRGSRIGIMTLD 1003

Query: 1022 EPAKEYEANFF 1032
            + +   E   F
Sbjct: 1004 DRSGRMEVMLF 1014


>gi|126725821|ref|ZP_01741663.1| DNA polymerase III subunit alpha [Rhodobacterales bacterium HTCC2150]
 gi|126705025|gb|EBA04116.1| DNA polymerase III subunit alpha [Rhodobacterales bacterium HTCC2150]
          Length = 1170

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 495/1062 (46%), Positives = 676/1062 (63%), Gaps = 53/1062 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+VHS YSLLEGA+ +  +   +     PA+A+TDTNNLF+ALE S+    
Sbjct: 1    MTNDPRFIHLRVHSEYSLLEGAMRVKKLAGLVKKSNMPAVALTDTNNLFAALEVSETLAK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPIIGCQ+DI  +     T     P      +V L     GY+ L++L S +YL D+
Sbjct: 61   EGLQPIIGCQVDIAAEVARGETPPAPAP------LVFLAQNEVGYENLMKLNSCLYL-DK 113

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                    ++ + +   +GLI LTGG+ GPI +     S   A+  +    ++FGDRLYV
Sbjct: 114  AGALPSATMAEVAQY-NDGLICLTGGADGPIGQLLQSGSLPAAKAMMSELAQVFGDRLYV 172

Query: 185  NLQRHRGYD------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G +         E   V++AY   LPLVATN+  F + E +EAHD LM ++   
Sbjct: 173  ELQRHPGAEGPQQAEAKTERGFVEMAYEMNLPLVATNDVYFPNTEMFEAHDALMCISQGA 232

Query: 239  VVSQKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             V Q D R ++T  HY K++ EM+++F+DLPEA+ENTVEIA+RC+F             +
Sbjct: 233  YVDQLDSRRQLTDQHYFKSQQEMITLFADLPEAIENTVEIAKRCAFK--------TYKRD 284

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    +E +ELR +A AGL+ RL    I      ++Y +RLDFEL +I  M F GYF
Sbjct: 285  PILPKFADDEVDELRLQAHAGLKARLE--VIPHATSVEEYEKRLDFELGIIEGMGFPGYF 342

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK + IPVGPGRGSGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPD
Sbjct: 343  LIVADFIKWAKDHEIPVGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPD 402

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RDVGR LQMPY QVDRL K
Sbjct: 403  FDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSK 462

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS++  +AD+ R RE   A+  V+RLL   Q++EGL R+ASTHAAG+VIGD
Sbjct: 463  MIPVEGVKPVSIEKALADEPRLREEAKAEEVVERLLRYGQQVEGLLRNASTHAAGVVIGD 522

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL  LVP+Y+D RSD+P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D +   G  +
Sbjct: 523  RPLDALVPLYQDPRSDMPATQFNMKWVEQAGLVKFDFLGLKTLTIVQNAVDLIKASGRSL 582

Query: 597  D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                               ++ IP DD  +Y L     T+ +FQ+ESSGM  AL  M+PD
Sbjct: 583  HVGADGRQLYEPLAGTENDINAIPLDDEASYELYAAAKTIAVFQVESSGMMDALRRMKPD 642

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDIIALV+LYRPGP++NI  +   KNG  +   +HP ID +L ETQG+I+YQEQVMQI
Sbjct: 643  CIEDIIALVALYRPGPMENIPKFCEVKNGLSERDKLHPTIDHILDETQGIIVYQEQVMQI 702

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ ++GYSL  AD+LRRAMGKK++E MD +K +FI G+S+NG+ +  A  +++LL KFA+
Sbjct: 703  AQEMAGYSLGGADLLRRAMGKKLQEAMDAEKPKFIKGSSENGVDEKKAREVWDLLDKFAN 762

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ------F 812
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  +  + R+       
Sbjct: 763  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDLHLTDKLAVYADEVRKPTDRGGM 822

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
             I+I+PP VN     F V + R+ Y+L A+K VG    R I  A  DKPF +L D   R 
Sbjct: 823  GIEIIPPCVNRSDAVFSVSEGRVVYALGALKNVGVEAMRLITGARGDKPFVTLFDLARRA 882

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D K++ +R +E L  AGA D    +R ++ +SLD +  Y+  + + R +   ++F  E G
Sbjct: 883  DLKRVGKRPMEMLARAGAFDELDRNRARVSRSLDALVSYSAAIHEQRASNQVSLFG-EAG 941

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                +  L        + R   E   +GFY SGHPLD Y   L++ G+    E+   + G
Sbjct: 942  DDLPEPRLTPCDDWLPAERLSEEFTSIGFYLSGHPLDDYMVALKRSGVMTLHEATQKVAG 1001

Query: 993  --NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                ++LA  +  +Q++K+ +G+R  +V  S+   +YE   F
Sbjct: 1002 GAAVVKLAGTISGRQERKSARGNRFAFVQLSDTTGQYEVTMF 1043


>gi|23336668|ref|ZP_00121872.1| COG0587: DNA polymerase III, alpha subunit [Bifidobacterium longum
            DJO10A]
          Length = 1189

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/1075 (32%), Positives = 547/1075 (50%), Gaps = 53/1075 (4%)

Query: 1    LTQYLEK-SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
            + + +     +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E  
Sbjct: 1    MVERMADYGNNFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMY 60

Query: 60   QKACAAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                A G++PIIG +  +  +                     +    +  + +     EG
Sbjct: 61   TNCVANGVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEG 120

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
               LI+  S   L  +  +  R+    L    ++G+I  +G  SG I           A 
Sbjct: 121  LVNLIKASSVANLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEAL 179

Query: 169  KRLLTFKKLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            +    F+ +FG D  ++ L  H    +    + ++ +A   + PL+ATN+S ++  ED +
Sbjct: 180  RAAGEFQDIFGKDNFFIELMDHGLTIETQVTNDLLTIAKKLDAPLLATNDSHYVHAEDAQ 239

Query: 227  AHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            A D ++ +   + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ + 
Sbjct: 240  AQDAMLCINSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMF 299

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
              H            +    +E +    K   GLE R        G    D  ++ D+E 
Sbjct: 300  DDHEDGAFMPKFPCPEG--WDETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYEC 351

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             VI +M+F GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FE
Sbjct: 352  GVICQMQFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFE 411

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+S+PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +
Sbjct: 412  RFLNPERVSLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIM 471

Query: 466  QMPYSQVDRLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEIS 515
               +S  +++ K +P        +SL  I D +         FRE   +DP   R+ E +
Sbjct: 472  GYEFSVGEKITKALPPAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEA 531

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + +EGL R    HA   ++G  P++   P+  +       T F     E  GL+K DFLG
Sbjct: 532  KGIEGLIRQTGVHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLG 590

Query: 576  LKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L  LT++  +L  +       +D + IP DD ETY L++   TLG+FQL+S GMR  L+ 
Sbjct: 591  LSNLTIIHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKT 650

Query: 635  MQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGV 688
            ++PD   DI AL++LYRPGP+       Y  RKNG +KI  IHP ++  LK+    T G+
Sbjct: 651  LKPDNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGL 710

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            IIYQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  
Sbjct: 711  IIYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQA 770

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +
Sbjct: 771  VWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGE 830

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLE 866
            AR+  IQ++ P VN    ++    + + + L AI+ VG      I+         F +  
Sbjct: 831  ARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFM 890

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF  RV    LNRR++ESL+ AGA D    +R  LL   +        +++ +     ++
Sbjct: 891  DFIRRVPLTALNRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDL 950

Query: 927  FAHEKGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
            F+  +   ++      +T+      +   +   E+ +LG Y S HPL   + IL  +   
Sbjct: 951  FSDAEDGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREM 1010

Query: 982  GYEESVATIR----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 V   +    G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1011 SIAHLVDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065


>gi|254560015|ref|YP_003067110.1| DNA polymerase III subunit alpha [Methylobacterium extorquens DM4]
 gi|254267293|emb|CAX23125.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens DM4]
          Length = 1173

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 513/1050 (48%), Positives = 703/1050 (66%), Gaps = 33/1050 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL VHSSYSLLEG +   +++   AAD+QPA+A+TDTNNLF ALEFS+ A  AGIQPI
Sbjct: 10   FIHLHVHSSYSLLEGGVKAGDLVKAAAADRQPALALTDTNNLFGALEFSEYAAKAGIQPI 69

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G QL I  +         + P     +IVLL     GY  L+ L SR +       +  
Sbjct: 70   AGLQLTICFE---APDPMARLPQAGCANIVLLAQDETGYGNLLRLGSRAHFDGPLGAAPN 126

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
            + +S L E   EGLI LTGG SGP+D +        A +RL   K  FG+  LYV +QRH
Sbjct: 127  LAVSAL-EGNVEGLIGLTGGLSGPLDTSLRAGRVDQAARRLEILKGAFGEEHLYVEIQRH 185

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               D    E ++++LA T+ L +VATN   F    DY+AHD L+A+A   +VS + R R+
Sbjct: 186  GLDDERAVERELLRLADTNGLGIVATNEPFFAKPGDYDAHDALLAIAEGRLVSDERRRRL 245

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI-------LQVHAPILPRFIEKECD 301
            TP H    R+ M+ +F DLP+AL  +VEIA RCS+        L   A +         D
Sbjct: 246  TPRHAFTTRAAMMELFRDLPDALSASVEIAMRCSYRARTRKPILPNFASVAAGEAPPMAD 305

Query: 302  DIQK-----------EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             + +           +E  EL  +A AGL++RL Q   A G+  +DYR RL FEL+VI +
Sbjct: 306  ALAEAAQTPVQAVAADEPTELCRQAEAGLKLRLKQHGTAPGFTEEDYRARLKFELDVIVK 365

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            MKF GYFLIV+DFI+WAK ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFERFLNP
Sbjct: 366  MKFPGYFLIVSDFIKWAKDHDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFERFLNP 425

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFDIDFC + R+ VIRYVQ +YG  +V QIITFG+L A+  LRDVGR L+MPY 
Sbjct: 426  ERVSMPDFDIDFCVEGRERVIRYVQQRYGERQVGQIITFGTLLARGVLRDVGRVLEMPYG 485

Query: 471  QVDRLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            QVD+L KL+P +PA+PV+  QAI  + + ++A   +P V RL+EIS+KLEGL+RHASTHA
Sbjct: 486  QVDKLTKLVPQNPANPVTLAQAIEGEPKLQQAIEEEPIVARLIEISKKLEGLHRHASTHA 545

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            AG+VIGDRPL +LVP+YRD ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+   D L
Sbjct: 546  AGVVIGDRPLEELVPLYRDPKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRCCTDLL 605

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
             QRG++VDL+ IP DD +TY  +    T+ +FQ+ES+GMR+AL  MQ D +EDIIALV+L
Sbjct: 606  KQRGIEVDLAQIPLDDKKTYEPMGRGETVAVFQVESAGMRKALCEMQADRLEDIIALVAL 665

Query: 650  YRPGPIDNIVVYNNRKNGKEK----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            YRPGP+ NI VY  RK G++         HP+++P+LKET G+I+YQEQVM++A++L+GY
Sbjct: 666  YRPGPMANIPVYCERKLGRDAGNEASWYSHPMLEPILKETFGIIVYQEQVMEVAKVLAGY 725

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L EAD+LRRAMGKKIK EMD Q++RF+ G ++NG++K  A  IF+LLAKFADYGFNKSH
Sbjct: 726  TLGEADMLRRAMGKKIKAEMDAQRDRFVKGCTENGLTKAKADEIFDLLAKFADYGFNKSH 785

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            AAAYA+++YQTA++K ++PVEFLAA+MTL++DN +K+ +F QDA++  I + PPSVNT  
Sbjct: 786  AAAYALVTYQTAYLKANHPVEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPSVNTSG 845

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            V F V + RI Y+LAAIKGVG +    I+ A  D PF  L  F  R++ + +N+R LE+L
Sbjct: 846  VVFDVREGRILYALAAIKGVGRSAVESIVAARGDTPFKDLACFARRLNPRHVNKRTLENL 905

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            + AGALDC    R +   +++ + K AQ   +  T+   ++F     +    + +     
Sbjct: 906  IAAGALDCIEPDRARAWAAVEPMMKMAQGAAEAETSGITDMFGGV-ASVDVALRIPPHEF 964

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI---RLAAMVV 1002
               + + + E   +GF+ SGHPLD Y PIL K+ ++ + +    +R       R+AA V+
Sbjct: 965  WTHTDKLKRECDAIGFFLSGHPLDEYGPILEKLRVQSWADFCRAVRAGTASVGRIAASVL 1024

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + +++T+ G+++G V  S+    +EA  F
Sbjct: 1025 DRSERRTKSGNKLGIVILSDQTGHFEAIIF 1054


>gi|294341044|emb|CAZ89439.1| DNA polymerase III subunit alpha [Thiomonas sp. 3As]
          Length = 1146

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1036 (39%), Positives = 593/1036 (57%), Gaps = 32/1036 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +VHL+ H+ YS+++GAL +++++   A D Q A+AITD NNLF+ + F + A  AG++PI
Sbjct: 3    YVHLRTHTEYSIVDGALRVDDMVPAAARDGQGALAITDFNNLFATVRFYKAALDAGVKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC + +                     ++LLV    GY  L +L+SR +L +Q +    
Sbjct: 63   IGCDVLL----------GSARHPGQFTRLLLLVQNRTGYLNLCDLLSRAWLDNQQRGRAV 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   WL+    EGLI L+G   G I +A     +  A         +F  R Y+ LQR  
Sbjct: 113  VQWEWLEGGLAEGLIALSGAHEGAIGQALLQGDTATARDLARQHAAVFEGRFYIELQRGG 172

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
                       V LA    LP+VAT+   FL  +D++AH+  + +A    +    R R  
Sbjct: 173  HAACEPHVQAAVPLAAELGLPVVATHPVQFLKADDFDAHEARVCIAEGETLGNPRRQRKF 232

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T   Y K+++EM ++F+D+P AL NTV IA+RC+ +L +  P LP F   +         
Sbjct: 233  TAQQYFKSQAEMEALFADVPSALANTVAIAQRCNLVLDLGKPQLPLFPTPQG----LTPA 288

Query: 309  NELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R +A  GLE RL      A         Y+QRL++EL +IA+M F GYFLIVADFI 
Sbjct: 289  EFFRQQAQDGLEQRLAVLYPQADQCEAARPRYQQRLEYELGIIAKMGFEGYFLIVADFIN 348

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N  PVGPGRGSGAGS+ AY+L ITD+DPL ++LLFERFLNP+R+SMPDFDIDFCQ+
Sbjct: 349  WAKNNGCPVGPGRGSGAGSLVAYSLRITDLDPLEYALLFERFLNPERVSMPDFDIDFCQE 408

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV+ KYG + V+QI TFG++ A+AA+RDVGR L + Y+  D + KLIP  P  
Sbjct: 409  NRDRVIDYVKEKYGVDAVSQIATFGTMAARAAVRDVGRVLDLSYTFCDGIAKLIPAKPGQ 468

Query: 486  PVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             +S   A+  +    +    +  V +LL+++Q+LEGL R+   HA G++I    L+   P
Sbjct: 469  HISLADALKQEPLLAQRYEEEEEVRQLLDLAQQLEGLPRNIGMHAGGVLIAPGKLTDFCP 528

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---VDLSLI 601
            +Y    S   V+QF+   +E AGL+KFDFLGL TLT+L+     + +         L  I
Sbjct: 529  LYAQPGSTDAVSQFDKDDVEAAGLVKFDFLGLATLTILELGAQLIRRNHPDRADFKLEDI 588

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD ++Y L+    T+ +FQLES GM+  L   +PD  EDIIALV+LYRPGP+D I  Y
Sbjct: 589  PLDDAKSYKLMAKGDTVAVFQLESRGMQGMLRDAKPDRFEDIIALVALYRPGPMDLIPTY 648

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK GKE +V   P +  +L+ET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMGKK 
Sbjct: 649  CARKAGKEDVVYPDPRMASVLEETYGIMVYQEQVMQVAQVIGGYSLGGADLLRRAMGKKK 708

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             EEM + +  F  GA+KNGI    A  IF+L+ KFA YGFNKSHAAAYA+++ QTAWMK 
Sbjct: 709  PEEMAQHRGIFAEGAAKNGIKPEKANEIFDLMEKFAGYGFNKSHAAAYALLAVQTAWMKA 768

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLA 840
            HYP EFLAA+M++ +D+ +K+K   +DA+   I ++PP VN     F   D   I Y+L 
Sbjct: 769  HYPAEFLAANMSIALDDTDKLKILVEDAQACGINVLPPDVNASQWRFDPVDSKTIRYALG 828

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIKG G      ++ A  ++PF SL DF  RVD  +LN+RVLE+L  AGA D     R  
Sbjct: 829  AIKGNGQAAVEAMIAARQERPFTSLFDFAERVDRTRLNKRVLEALAKAGAFDSLHPERAA 888

Query: 901  LLQSLDNIQKYAQWVEKNR-TNKHENIFAHEKGT----FSDKITLEKFSVENSSVRFENE 955
            ++ +++    YA   E  R      ++FA +        + +  L +    +   +   E
Sbjct: 889  VMAAVETAMDYAAQREAARQQAGLFDLFAADAADGGHNPAHEPRLPEVEPWDLRTKLSFE 948

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  +G+Y SGH  D     +R+       + V +     + +A +    +  ++++G RI
Sbjct: 949  KTAIGYYLSGHLFDASAEEVRRFAPTALMDLVDSRD--PVLIAGIAAGVRLVQSQRG-RI 1005

Query: 1016 GWVTFSEPAKEYEANF 1031
              +   + +   E   
Sbjct: 1006 AILALEDRSGAMEIVI 1021


>gi|33593326|ref|NP_880970.1| DNA polymerase III subunit alpha [Bordetella pertussis Tohama I]
 gi|33572682|emb|CAE42605.1| DNA polymerase III alpha subunit [Bordetella pertussis Tohama I]
          Length = 1163

 Score =  747 bits (1929), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/1055 (37%), Positives = 603/1055 (57%), Gaps = 45/1055 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +++ +   P FVHL+VHS +S+ +G + +++++ ++A   QPA+A+TD +N+F  ++F +
Sbjct: 1    MSEAVTNPPPFVHLRVHSEFSVSDGIVRISDLIKRVAKLGQPAVALTDLSNIFGLIKFYK 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  AG++P+ G  + +   D+ +              ++LLV   +GY  L EL++R +
Sbjct: 61   GARGAGVKPVAGSDVWLTNDDDREKP----------FRLLLLVRNHQGYLNLCELLTRSF 110

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            L +Q K    +   WLQ  G EGLI+L+G   G + +A    ++  A      + +LF  
Sbjct: 111  LENQYKGRAEVRREWLQ--GQEGLIVLSGARGGDVGQALEAGNAVTALSLARQWGQLFPG 168

Query: 181  RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQR     D       ++LA    LP+VAT+   FL  ++++AH+  + +A   +
Sbjct: 169  SYYIELQRAGFDGDETYTQAAMRLAAEAGLPVVATHPVQFLDRDEFQAHEARVCIAEGEI 228

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R  R T D YL +  EM   F+D+P AL NTVEIARRC+  L +  P LP F   
Sbjct: 229  LANPRRVRRYTQDQYLLSSEEMARRFADVPSALANTVEIARRCNLTLVLGKPRLPNFPTP 288

Query: 299  ECDDIQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +        ++ L   +  GLE     L      +      Y +RL +E   I +M F G
Sbjct: 289  DGV----TLDDYLVQLSEEGLEKRLQFLFPDEAERNAKRDQYYERLRWECKTIIQMGFPG 344

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV DFI W K N +PVGPGRGSGAGS+ AYAL ITD+DP+R+ LLFERFLNP+R+SM
Sbjct: 345  YFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSM 404

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQD R+ VI YV+ KYG E V+QI TFG+L AKA +RD GR L MPY   D L
Sbjct: 405  PDFDIDFCQDNRERVIDYVKMKYGREAVSQIATFGTLGAKAVVRDAGRVLDMPYLFCDAL 464

Query: 476  CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP +PA P +  + + D+  F++    +  V  L+++++ LEGL R    HA G++I
Sbjct: 465  SKLIPFNPADPWTLERTLKDEPAFKDRYEQEEEVRALVDLARPLEGLTRSIGMHAGGVLI 524

Query: 535  GDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-- 591
                L+   P+Y    + +  V+QF+   +E AGL+KFDFLGL+ LT+L  ++ F+ Q  
Sbjct: 525  APGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRFVRQFN 584

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  D+  +  DD   Y +L    T  +FQLES GM++ L+ ++P   EDIIA+++LY
Sbjct: 585  ADKRDFDVMALSLDDQAAYKVLCDANTTAVFQLESRGMKELLKKLRPSTFEDIIAMLALY 644

Query: 651  RPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+++ +   + NRK+G+  +   HP ++  L+ T GVI+YQEQVM I+Q++ GYSL 
Sbjct: 645  RPGPLESGMVDDFVNRKHGRAAVDYFHPDLEGTLRSTYGVIVYQEQVMLISQIIGGYSLG 704

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM K +E F  GA + G    +AV +F+L+ KFA YGFNKSH+AA
Sbjct: 705  GADLLRRAMGKKKPEEMAKHRELFEQGAREKGHDPDLAVKLFDLMEKFAGYGFNKSHSAA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+I+YQTAW+K ++P EFLAA+++ +MD+ +K++ F +DA+   ++++PP VN     F
Sbjct: 765  YALIAYQTAWLKAYHPTEFLAATLSSDMDDTDKVQIFVRDAQDNGVEVLPPDVNASGYRF 824

Query: 829  KVGDNR----------IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKL 877
            +   ++          + Y L A+KG G      I+ A     PF +L DFC RV    +
Sbjct: 825  EPVADKHTEQGKPPRTMRYGLGAVKGTGQGAVEEILRARQEGGPFANLFDFCRRVSKHAV 884

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NRR +E+L+ AGA D    +R  +L S+    + A+  +  R+    ++F  + G     
Sbjct: 885  NRRTIEALIKAGAFDTIEPNRAAMLVSVGTAMEAAE--QAARSANQSSLFGDDSGDVVAG 942

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
              L K +  N       E+  LG+YFSGH  D ++  +R++                  +
Sbjct: 943  -ELTKVAPWNLHTTLTEEKTALGYYFSGHLFDAWRDEVRRIVPMQLARLEPQRDLQ--WM 999

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++   +   TR+G  + +    +   + E + F
Sbjct: 1000 CGVLAGVRTMMTRRGK-MVFAVLDDGTAQIEISVF 1033


>gi|332178643|gb|AEE14332.1| DNA polymerase III, alpha subunit [Thermodesulfobium narugense DSM
            14796]
          Length = 1138

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1030 (39%), Positives = 612/1030 (59%), Gaps = 23/1030 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLL+GA  L++I+ K   D   A+A+TD  N++ AL+F   A    I+P
Sbjct: 2    SFVHLHVHSEYSLLDGASRLDDIILKAKNDNMQALALTDHGNMYGALKFYSLAKEHEIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC++ I   D  K T         +  ++L+    EGY+ L+ LVS  +L        
Sbjct: 62   LIGCEMYITD-DMTKQTRANGDLDTYLSHLILIAKDFEGYKNLVRLVSFGFLKG-FYYKP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI L  L E   +GLI+ +    G I +    N    A +   TFK+ FGD  Y+ +Q H
Sbjct: 120  RIDLKTLFEY-KKGLIVSSACMYGRIPQLILSNKKDQAVELAKTFKEQFGDDFYLEIQDH 178

Query: 190  RGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +  +    ++ ++    +PL+ATN+S + ++ED E HDVL+ +     V  ++R + 
Sbjct: 179  GLPEEKKLIPVIINMSQDLNIPLIATNDSHYTNKEDAEFHDVLLCIQTKKTVQDENRMKF 238

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D  Y K   EM  +FS   +A+ENT+ +A +CS  L +    +P+F   E     K E
Sbjct: 239  NTDSLYFKTSEEMKELFSYCKDAVENTLIVADKCSLELPIGKVTVPKFPCPEG----KSE 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L      GL  R        G   ++  +RL +EL++I +  + GYFLIV+D+I +A
Sbjct: 295  REYLNLLIEKGLNRRYK------GNITKEIEERLKYELDIIQKTGYEGYFLIVSDYINYA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+N I VGPGRGS AGS+ AY L ITDIDPL+++LLFERFLNP+R++ PD D+DFC ++R
Sbjct: 349  KENGIQVGPGRGSAAGSLVAYVLGITDIDPLKYNLLFERFLNPERVNPPDIDVDFCIEKR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +V+ Y+  +YG E VAQI TFG++ A+A +RDVGR L  P S VD+L KLIPN P    
Sbjct: 409  AQVLNYLVKRYGQENVAQIGTFGTMNARAVVRDVGRTLGKPLSIVDKLAKLIPNKPGSQA 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            +L+   +    ++   ++PS+  L E S KLEGL RH+S HAAG+VI   P+  L+P+ R
Sbjct: 469  TLKEAEELQEVKQFLNSNPSLKELWEKSIKLEGLTRHSSVHAAGVVISPFPIYDLIPLQR 528

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D+PVTQ+ M+ +EK+G +K D LGL+ LT++ K+L+ + + RG+KVD+  IP DD 
Sbjct: 529  PSEGDVPVTQWPMEDVEKSGFLKMDLLGLRNLTVIGKTLELIEKTRGIKVDIEDIPLDDP 588

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
            + Y LL    TLG+FQLESSGM+Q L+ ++PD  ED+IA+++LYRPGP+++ +V     R
Sbjct: 589  KVYELLERGETLGVFQLESSGMQQLLKEVKPDKFEDLIAILALYRPGPMNSGMVEQFIRR 648

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K+ KE +V IH  ++P+L ET GV+IYQEQ+MQ+A +L+G+SL EAD+LRRAMGKK  E 
Sbjct: 649  KHKKEPVVFIHKDVEPILSETYGVMIYQEQIMQLASILAGFSLGEADLLRRAMGKKKAEV 708

Query: 725  MDKQKERFISGASKNG-ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            M  QK +F+ GA   G IS+  A  IF+ +AKFA+YGFNKSH+A+YA+I+Y+TAW+K +Y
Sbjct: 709  MAAQKPKFVEGAINKGLISREQAEKIFDDMAKFAEYGFNKSHSASYALITYRTAWLKVYY 768

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
              E++AA ++    + +K+ ++ ++A++F ++++ P VN    +F V  N+I + L+AIK
Sbjct: 769  TPEYMAALLSSVSSDTDKVAEYIKEAKKFGVEVLSPDVNESGENFTVIGNKIRFGLSAIK 828

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+    +D  F +L DF  R  SK +N+++ E+L+ AGALD     R+ LL
Sbjct: 829  GVGKAAIDTILANRLSDGNFKNLRDFIYRTSSKSVNKKIYENLIKAGALDNLYKDRLNLL 888

Query: 903  QSLDNIQKYAQWVEK--NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
              LD +    +   K  N  +     F  E+    + I +      + S++   E+ VLG
Sbjct: 889  DQLDEVLALVKKSTKTDNEHSLFNEAFDEEELYIDNDIEIIPKKDFDPSLKLAFEKEVLG 948

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             Y SGHPL  YK ++  +                +++  +V +K+Q   + GS    +  
Sbjct: 949  LYVSGHPLKPYKFLINSISNFNISSLNEL-DTEKVKICGIVFNKKQVFKKDGSFFFVLNI 1007

Query: 1021 SEPAKEYEAN 1030
             +     E  
Sbjct: 1008 EDLTGSVECI 1017


>gi|322691499|ref|YP_004221069.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp.
            longum JCM 1217]
 gi|320456355|dbj|BAJ66977.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp.
            longum JCM 1217]
          Length = 1185

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/1064 (32%), Positives = 542/1064 (50%), Gaps = 52/1064 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E      A G++PI
Sbjct: 8    FVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKPI 67

Query: 71   IGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IG +  +  +                     +    +  + +     EG   LI+  S  
Sbjct: 68   IGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSVA 127

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             L  +  +  R+    L    ++G+I  +G  SG I         + A +    F+ +FG
Sbjct: 128  NLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFEEALRAAGEFQDIFG 186

Query: 180  -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    +      ++ +A     PL+ATN+S ++  ED +A D ++ +   
Sbjct: 187  KDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINSG 246

Query: 238  TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
            + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H        
Sbjct: 247  SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAFMPK 306

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                +    +E +    K   GLE R        G    D  ++ D+E  VI +M+F GY
Sbjct: 307  FPCPEG--WDETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFCGY 358

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+R+S+P
Sbjct: 359  FLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVSLP 418

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S  +++ 
Sbjct: 419  DIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKIT 478

Query: 477  KLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHAS 526
            K +P        +SL  I D +         FRE   +DP   R+ E ++ +EGL R   
Sbjct: 479  KALPPAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEAKGIEGLIRQTG 538

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HA   ++G  P++   P+  +       T F     E  GL+K DFLGL  LT++  +L
Sbjct: 539  VHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIHDTL 597

Query: 587  DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
              +       +D + IP DD ETY L++   TLG+FQL+S GMR  L+ ++PD   DI A
Sbjct: 598  KNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFNDISA 657

Query: 646  LVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIA 699
            L++LYRPGP+       Y  RKNG +KI  IHP ++  LK+    T G+IIYQEQV   A
Sbjct: 658  LIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQSAA 717

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            ++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  ++++L  F+ Y
Sbjct: 718  RILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPFSGY 777

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+  IQ++ P
Sbjct: 778  AFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQVLSP 837

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDSKKL 877
             VN    ++    + + + L AI+ VG      I+         F +  DF  RV    L
Sbjct: 838  DVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPLTAL 897

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NRR++ESL+ AGA D    +R  LL   +        +++ +     ++F+  +   ++ 
Sbjct: 898  NRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDGGAEA 957

Query: 938  -----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR- 991
                 +T+      +   +   E+ +LG Y S HPL   + IL  +        V   + 
Sbjct: 958  MGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVDRAKT 1017

Query: 992  ---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1018 MGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061


>gi|82703844|ref|YP_413410.1| DNA polymerase III, alpha subunit [Nitrosospira multiformis ATCC
            25196]
 gi|82411909|gb|ABB76018.1| DNA polymerase III, alpha subunit [Nitrosospira multiformis ATCC
            25196]
          Length = 1174

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1045 (40%), Positives = 619/1045 (59%), Gaps = 40/1045 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    +F+HL++HS YS+++G + ++  + K  A+  PA+A+TD +NLF  ++F Q+A  
Sbjct: 1    MSAPTTFIHLRLHSEYSVVDGIVRIDEAVAKAVAEGMPALALTDLSNLFGLIKFYQEARN 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PI+GC + I    +   +            I+LL  +  GY  L  L+SR Y  +Q
Sbjct: 61   KGLKPIVGCDVWISNDIDRDKS----------FRILLLCQSYPGYLALCRLLSRAYRENQ 110

Query: 125  GKQSVRICLSWL--QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             +    I  SWL   ++GTEGLI L+G + G I  A   N    A      + +LF  R 
Sbjct: 111  YRGRAEIRKSWLSASDLGTEGLIALSGANLGDIGLALIHNDLDQARTLAQEWTELFPGRF 170

Query: 183  YVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +QR    +      + + LA    LP+VAT+   +L+ EDY AH+  + ++   V+ 
Sbjct: 171  YIEVQRAGHANAEALVQRSLALAAALRLPVVATHPVQYLNPEDYRAHEARVCISQGYVLG 230

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             + RPR  T + Y K ++EM ++F+D+P AL NT+EIARRC+  L++    LP+F     
Sbjct: 231  DRRRPRHCTEEQYFKTQAEMSALFADIPSALANTMEIARRCNLALELGINRLPQFPTPN- 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                +  +  LRN+A  GLE R+         +      YR RLDFE + I +M F+GYF
Sbjct: 290  ---NESLDLYLRNQASTGLEKRMRALFPDPDRRAAEMPKYRARLDFEADTIVQMGFAGYF 346

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK+N++PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPD
Sbjct: 347  LIVADFINWAKQNDVPVGPGRGSGAGSLVAYSLGITDLDPLRYDLLFERFLNPERVSMPD 406

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQD R+ VI YV+ KYG E V+QI TFG++ AKA +RDVGR L +PY+ VD+L K
Sbjct: 407  FDIDFCQDGREHVIEYVKQKYGAESVSQIATFGTMAAKAVVRDVGRVLDLPYNFVDQLAK 466

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L+P +    +      ++ +  +   A+  V  LLE++++LEGL R+   HA G++I   
Sbjct: 467  LVPFELGMTLKKAR-EEEPQLNQRAEAEEEVRNLLELAERLEGLTRNVGMHAGGVLIAAG 525

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG---- 593
             ++   P+Y     +  V+Q +   +EK GL+KFDFLGL+TLT+L  S+ ++ QR     
Sbjct: 526  KITDFCPVYCADGGESVVSQLDKDDVEKVGLVKFDFLGLRTLTILDWSVRYIRQRKSGNT 585

Query: 594  ------VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
                      L  +P DD +TY L+     +GIFQ ES GM+  L+  +PD  ED+IALV
Sbjct: 586  GNDSETRSFSLENLPLDDPDTYALMRQGNAVGIFQFESRGMKDLLQKARPDRFEDLIALV 645

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +LYRPGP+  I  +  RK+GK  +  + P + P+L+ T G+++YQEQVMQIAQ++ GYSL
Sbjct: 646  ALYRPGPMSLIPEFIERKHGKRVVEYLDPRLKPILEPTYGIMVYQEQVMQIAQVIGGYSL 705

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM  Q++ F+SGA KNG+++  A  +F+L+ KFA YGFNKSHAA
Sbjct: 706  GSADLLRRAMGKKKPEEMALQRDIFVSGAVKNGLTEGDAAELFDLMEKFAGYGFNKSHAA 765

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA+I++QTA++K HYP EF++A+++ +MD+ +K+  F +D+    + ++PP +N     
Sbjct: 766  AYALIAFQTAYLKAHYPSEFMSATLSADMDDTDKVHIFFEDSIANGLAVLPPDINLSGYR 825

Query: 828  FK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F  V +  I Y L AIKG G +    I++A      F  L DFC RVD + +NRRV+ESL
Sbjct: 826  FVPVDEKTIRYGLGAIKGTGESAIAAIIQAREQGGAFSDLFDFCHRVDKRIVNRRVVESL 885

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            + AGA D     R  LL S+    + A+  +  R+    ++F  E G    +  L K  V
Sbjct: 886  IRAGAFDAIDTHRAALLASVGIALESAE--QAERSVNQVSLFGEEMGVIE-RPALVKVPV 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                   +NE+  LG Y SGHP + Y+  L           V         LA +V + +
Sbjct: 943  WPEKETLKNEKLALGLYLSGHPFNAYREELNHFVRTRLNRLVPQREPQ--LLAGIVYAIR 1000

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEAN 1030
             + TR+G R+G +   + + + E  
Sbjct: 1001 TQVTRRG-RMGVIVLDDGSNQVELV 1024


>gi|23464753|ref|NP_695356.1| DNA polymerase III subunit alpha [Bifidobacterium longum NCC2705]
 gi|23325323|gb|AAN23992.1| DNA polymerase III alpha subunit [Bifidobacterium longum NCC2705]
          Length = 1189

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/1075 (32%), Positives = 544/1075 (50%), Gaps = 53/1075 (4%)

Query: 1    LTQYLEK-SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
            + + +     +FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E  
Sbjct: 1    MVERMADYGNNFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMY 60

Query: 60   QKACAAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                A G++PIIG +  +  +                     +    +  + +     EG
Sbjct: 61   TNCVANGVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEG 120

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
               LI+  S   L  +  +  R+    L    ++G+I  +G  SG I           A 
Sbjct: 121  LVNLIKASSVANLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEAL 179

Query: 169  KRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            +    F+ +FG D  ++ L  H    +      ++ +A     PL+ATN+S ++  ED  
Sbjct: 180  RAAGEFQDIFGKDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAG 239

Query: 227  AHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            A D ++ +   + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ + 
Sbjct: 240  AQDAMLCINSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMF 299

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
              H            +    +E +    K   GLE R        G    D  ++ D+E 
Sbjct: 300  DDHEDGAFMPKFPCPEG--WDETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYEC 351

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             VI +M+F GYFL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FE
Sbjct: 352  GVICQMQFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFE 411

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+S+PD D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +
Sbjct: 412  RFLNPERVSLPDIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIM 471

Query: 466  QMPYSQVDRLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEIS 515
               +S  +++ K +P        +SL  I D +         FRE   +DP   R+ E +
Sbjct: 472  GYEFSVGEKITKALPPAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEA 531

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + +EGL R    HA   ++G  P++   P+  +       T F     E  GL+K DFLG
Sbjct: 532  KGIEGLIRQTGVHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLG 590

Query: 576  LKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L  LT++  +L  +       +D + IP DD ETY L++   TLG+FQL+S GMR  L+ 
Sbjct: 591  LSNLTIIHDTLKNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKT 650

Query: 635  MQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGV 688
            ++PD   DI AL++LYRPGP+       Y  RKNG +KI  IHP ++  LK+    T G+
Sbjct: 651  LKPDNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGL 710

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            IIYQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  
Sbjct: 711  IIYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQA 770

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +
Sbjct: 771  VWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGE 830

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLE 866
            AR+  IQ++ P VN    ++    + + + L AI+ VG      I+         F +  
Sbjct: 831  ARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFM 890

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF  RV    LNRR++ESL+ AGA D    +R  LL   +        +++ +     ++
Sbjct: 891  DFIRRVPLTALNRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDL 950

Query: 927  FAHEKGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
            F+  +   ++      +T+      +   +   E+ +LG Y S HPL   + IL  +   
Sbjct: 951  FSDAEDGGAEAMGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREM 1010

Query: 982  GYEESVATIR----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 V   +    G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1011 SIAHLVDRAKTMGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065


>gi|312129891|ref|YP_003997231.1| DNA polymerase iii, alpha subunit [Leadbetterella byssophila DSM
            17132]
 gi|311906437|gb|ADQ16878.1| DNA polymerase III, alpha subunit [Leadbetterella byssophila DSM
            17132]
          Length = 1198

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1078 (32%), Positives = 565/1078 (52%), Gaps = 66/1078 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL  H+ YSLL+GA S+  +  K   D+ PA+AITD  N+F   +F   A   G++PI
Sbjct: 3    FSHLHNHTQYSLLDGASSIKKLFAKAQQDEMPAVAITDHGNMFGVFDFVATAGKYGVKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+  +      K   + +         +LL   AEGY+ L +L S  Y+     +  R
Sbjct: 63   VGCEFYVVDDHTRKSFTKDQK--DVRYHQLLLAKNAEGYKNLTKLCSLGYMEGLYSKYPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I  + +++   +GLI  T      + +       + AE+    +   FG+  YV +QRH 
Sbjct: 121  ITKALIEKY-KDGLIATTCCIGALVPKTILKKGEEEAEQEFRWWLDRFGEDYYVEIQRHD 179

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--- 246
              ++ R    +++ A  + + ++A+N+S ++ + D+ AHD+L+ +     +S        
Sbjct: 180  MAEQIRVNEVLLKFAKKYNVKVIASNDSHYVDQSDWVAHDILLCINTGEKLSTPSNKEFS 239

Query: 247  -------------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
                               Y K  +EM  +FSD+PEA++NT EI  +   +      +LP
Sbjct: 240  DDAEGSTKGTRFAFYNDQFYFKTTAEMTQLFSDIPEAIDNTNEIVGKVDHLNLKKDILLP 299

Query: 294  RFIEKECD----DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
             F   +      D    +   LR+    G            G  + +  +RL+FEL+ I 
Sbjct: 300  NFPIPQEFKVHADDTLNQWEYLRHLTFEGARK-------RYGTVSPEAEERLNFELHTIK 352

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
             M F+GYFLIV DFI+  ++  + +GPGRGS AGS  AY + IT+IDP++++LLFERFLN
Sbjct: 353  TMGFAGYFLIVMDFIKAGRELGVMIGPGRGSAAGSAVAYCIGITNIDPIKYNLLFERFLN 412

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            PDR SMPD D DF  + R  VI YV +KYG  +VAQIIT+G++  K++++DV R + +P 
Sbjct: 413  PDRKSMPDIDTDFDDEGRQRVIDYVVDKYGKNQVAQIITYGTMATKSSVKDVARVMDLPL 472

Query: 470  SQVDRLCKLIPNDPA---------------------HPVSLQAIADDSRFREARLADPSV 508
            ++ + + KLIP+ P                        ++   I +  + R+        
Sbjct: 473  AEANHIAKLIPDKPGYGMNFQKLIHAPISGPKSLTEIGLNPDEIENVKQIRDMYEGKDLT 532

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
             ++L+ ++KLEG  R+   HAAGI+I    LS++VP+     SDL +TQF  K IE AG+
Sbjct: 533  AKVLKQAEKLEGTVRNTGIHAAGIIIAPYDLSEIVPVSVAKDSDLLITQFEGKVIEDAGV 592

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            IK DFLGL+ LT+++++L  + +   V++D+  IP DD ETY L     T  IFQ ES G
Sbjct: 593  IKMDFLGLRNLTIIKEALRMIKENYGVEIDIDNIPLDDEETYRLFQRGETNAIFQFESDG 652

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            M++ ++ +QPD  +D+IA+ +LYRPGPI  I  Y NRK+G+E I    P ++  L ET G
Sbjct: 653  MKKYMKELQPDRFDDLIAMNALYRPGPIGYIPNYINRKHGREPITYDLPEMEEHLAETYG 712

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            + +YQEQVM ++Q L+ ++  +AD LR+AMGKK KE +DK K +F+ G +KNG  + +  
Sbjct: 713  ITVYQEQVMLLSQKLANFTKGDADTLRKAMGKKQKEVLDKMKAKFMEGGAKNGHPEKVLD 772

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++     FA Y FNKSH+  YA ++YQTA++KTHY  E++A  +T ++ N+EKI  F +
Sbjct: 773  KVWTDWEAFAQYAFNKSHSTCYAFVAYQTAYLKTHYTAEYMAGVLTSQLGNIEKITFFME 832

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865
            + +   +Q++ P +N     F V     I + L  IKG G      I+E    +  F  +
Sbjct: 833  ECKALGLQVLGPDINESQKRFSVNKKHEIRFGLGGIKGTGDAAVDAIIEEREKNGQFKDI 892

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQWVEK 917
             DF +RV+ + +N++ LESL +AGA DCF    R             ++ + +YA  V++
Sbjct: 893  FDFITRVNLRTVNKKTLESLAYAGAFDCFEEIHRAIYFHVSEEGGTFIERLIRYANKVQE 952

Query: 918  NRTNKHENIFAHEKGTFS---DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
            ++ +    +F    G  +    K  +EK     +  +   E+ V+GFY SGHPLD +   
Sbjct: 953  DKMSTQNTLFGTLGGDTAFNIQKPKIEKVEEWGNIEKLRYEKEVVGFYISGHPLDQFAME 1012

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +               +     +  +V S   ++++ G++ G     +     E   F
Sbjct: 1013 MSLCRPLDNTLLEKENKDKEFTIGGVVTSANIRQSKNGNQFGIYRIEDYTGSLEIALF 1070


>gi|165976527|ref|YP_001652120.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 3 str. JL03]
 gi|165876628|gb|ABY69676.1| DNA polymerase III alpha subunit [Actinobacillus pleuropneumoniae
            serovar 3 str. JL03]
          Length = 1158

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1048 (38%), Positives = 604/1048 (57%), Gaps = 39/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  +A  
Sbjct: 1    MTQQ-RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +  + + +              + LL     GY  +  L+S+ Y    
Sbjct: 60   SGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAYQQGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              +   +  +WL E+  EG+I+L+G  +G + +A    +   A++ +  +++ F +  Y+
Sbjct: 110  V-EFPLVEKAWLAEL-NEGIIVLSGERNGDVGKALLKENEAEADELVGFYQQYFPNHYYL 167

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  +   
Sbjct: 168  ALCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDP 227

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP + +P  Y ++  EM ++F+DLP+A+ENTV+IA RC+  +++       +       
Sbjct: 228  KRPKKYSPQQYFRSEQEMCALFADLPQAIENTVQIAMRCNVTVRLGE-----YFLPNFPT 282

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLI
Sbjct: 283  GDLSTEDFLVKKSREGLEERLEFLFPDPEERKNKRSIYDERLQVELDVINQMGFPGYFLI 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 343  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 402

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+ KLI
Sbjct: 403  VDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLI 462

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 463  PPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAI 521

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR       
Sbjct: 522  TDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKE 581

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP
Sbjct: 582  PVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGP 641

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +++ +V       + N +         H  + P+L  T GVI+YQEQVMQIAQ+L+GY+L
Sbjct: 642  LESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTL 701

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 702  GGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+    
Sbjct: 762  AYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSGKHR 821

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR  E L
Sbjct: 822  FSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGL 881

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+++L++  K +    K       ++F     T  + +       
Sbjct: 882  IMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTP 941

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +     E E+  LG Y SGHP+  +   L         E   T RG  + +A +++  
Sbjct: 942  KWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGS 1001

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++GSR+G  T  + + + +   F
Sbjct: 1002 RIAVTKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|110681190|ref|YP_684197.1| DNA polymerase III subunit alpha [Roseobacter denitrificans OCh 114]
 gi|109457306|gb|ABG33511.1| DNA polymerase III, alpha subunit [Roseobacter denitrificans OCh 114]
          Length = 1183

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 493/1074 (45%), Positives = 671/1074 (62%), Gaps = 64/1074 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL+ HS YSLLEGAL L  +         PA+A+TD NN+F+ALEFS     
Sbjct: 1    MSTHPRFIHLRTHSEYSLLEGALRLKKLPSMCRDAGMPALALTDKNNMFAALEFSVAMSG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+GCQ+D+       +T Q          +VLL  +  GY+ L+ L S +Y+ D+
Sbjct: 61   AGVQPILGCQVDVAY-----VTAQPGERERAPAPVVLLAQSEAGYENLMRLNSCLYI-DK 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G    ++ LS L E    G+I LTGG  GP+ +         A+  +   K  F DRLY+
Sbjct: 115  GGALPQVTLSEL-ESNAGGIICLTGGPDGPVGQLLQLGQMPAAQALMDRLKAAFQDRLYI 173

Query: 185  NLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             LQRH G       +R  E   V++AY  +LPLVATN+  F + + YEAHD L+ +A   
Sbjct: 174  ELQRHPGESGQPEKERLTERGFVEMAYAMDLPLVATNDVYFPNSDMYEAHDALICIAEGA 233

Query: 239  V-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                Q DR R+T  HY K++SEMV++F+DLPEA+ENTVEIA+RC+              +
Sbjct: 234  YVDQQDDRRRLTNQHYFKSQSEMVALFADLPEAIENTVEIAKRCA--------FQAYRRD 285

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    +E  ELR +A AGL+ RL    I      +DY +RLDFEL +I  M F GYF
Sbjct: 286  PILPKFADDEVEELRKQAHAGLKARLE--VIPHAASVEDYTKRLDFELGIIEGMGFPGYF 343

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI+WAK+  IPVGPGRGSGAGS+ AYALT+TD+DPLR++LLFERFLNP+R+SMPD
Sbjct: 344  LIVADFIKWAKEQGIPVGPGRGSGAGSLVAYALTVTDLDPLRYNLLFERFLNPERVSMPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K
Sbjct: 404  FDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSK 463

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IP +   PVS++  +AD+ R RE    +  V RLL   Q++EGL R+ASTHAAG+VIGD
Sbjct: 464  MIPVEGVKPVSIEKALADEPRLREEAKNEEVVARLLNYGQQVEGLLRNASTHAAGVVIGD 523

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL  LVP+Y+D RS++P TQFNMKW+E+AGL+KFDFLGLKTLT++Q +++ +   G  +
Sbjct: 524  RPLDALVPLYQDPRSEMPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVEQIMASGRPL 583

Query: 597  D------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                               ++ IP DD  +Y L  +  T+ +FQ+ESSGM  AL+ M+P 
Sbjct: 584  HIAADGTELYEPAPGTENDINAIPLDDERSYKLYASAKTVAVFQVESSGMMDALKRMKPT 643

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            CIEDI+ALV+LYRPGP++NI  Y   KNG  ++ SIHPLID +L+ETQG+I+YQEQVMQI
Sbjct: 644  CIEDIVALVALYRPGPMENIPTYCEVKNGLRELQSIHPLIDDILEETQGIIVYQEQVMQI 703

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+++GYSL  AD+LRRAMGKKI EEM K++ +F  GA  NG+ K  A  +F+LL KFA+
Sbjct: 704  AQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEKGAVANGVDKDKAREVFDLLEKFAN 763

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIM 817
            YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  ++   +K+  + ++ R +  +  +
Sbjct: 764  YGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNCDIHLTDKLAIYFEEVRKRLELPWV 823

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA---------DKPFDSLEDF 868
            PP VN     FKV D  + Y+L A+K VG    + I +            DKPF +L D 
Sbjct: 824  PPCVNRSDATFKVADGALVYALGALKNVGVEAMKLITDGRRADPGDEGSPDKPFATLFDL 883

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              RVD K++ +R LE L  +GA D    +R ++  +LD +  Y+  + + + +   ++F 
Sbjct: 884  ARRVDLKRVGKRPLEMLARSGAFDALDANRRRVFGALDALVNYSAAIHEQKASNQVSLFG 943

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG-------IK 981
             E G    +  L        + R   E + +GFY SGHPLD Y   L++           
Sbjct: 944  -EAGDDLPEPRLHPVDDWQPAERLSEEFKAVGFYLSGHPLDDYMGQLKRKWGNDRGVPFM 1002

Query: 982  GYEESVATIRGN---NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +E    +      N RLA +V  +Q++K+ +G+R  +   S+P   YE   F
Sbjct: 1003 TLDELTEKVTERGAMNARLAGIVAGRQERKSARGNRFAFAQMSDPTGAYEVTLF 1056


>gi|303250150|ref|ZP_07336352.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 6 str. Femo]
 gi|307252740|ref|ZP_07534631.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 6 str. Femo]
 gi|302651213|gb|EFL81367.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 6 str. Femo]
 gi|306859772|gb|EFM91794.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 6 str. Femo]
          Length = 1158

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1048 (38%), Positives = 604/1048 (57%), Gaps = 39/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  +A  
Sbjct: 1    MTQQ-RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +  + + +              + LL     GY  +  L+S+ Y    
Sbjct: 60   SGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAYQQGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              +   +  +WL E+  EG+I+L+G  +G + +A    +   A++ +  +++ F +  Y+
Sbjct: 110  V-EFPLVEKAWLAEL-NEGIIVLSGERNGDVGKALLKENEAEADELVGFYQQYFPNHYYL 167

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  +   
Sbjct: 168  ALCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDP 227

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP + +P  Y ++  EM ++F+DLP+A+ENTV+IA RC+  +++       +       
Sbjct: 228  KRPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGE-----YFLPNFPT 282

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLI
Sbjct: 283  GDLSTEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLI 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 343  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 402

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+ KLI
Sbjct: 403  VDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLI 462

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 463  PPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAI 521

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR       
Sbjct: 522  TDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKE 581

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP
Sbjct: 582  PVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGP 641

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +++ +V       + N +         H  + P+L  T GVI+YQEQVMQIAQ+L+GY+L
Sbjct: 642  LESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTL 701

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 702  GGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+    
Sbjct: 762  AYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSGKHR 821

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR  E L
Sbjct: 822  FSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGL 881

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+++L++  K +    K       ++F     T  + +       
Sbjct: 882  IMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTP 941

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +     E E+  LG Y SGHP+  +   L         E   T RG  + +A +++  
Sbjct: 942  KWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGS 1001

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++GSR+G  T  + + + +   F
Sbjct: 1002 RIAVTKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|189439008|ref|YP_001954089.1| DNA polymerase III subunit alpha [Bifidobacterium longum DJO10A]
 gi|189427443|gb|ACD97591.1| DNA polymerase III alpha subunit [Bifidobacterium longum DJO10A]
          Length = 1185

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/1064 (32%), Positives = 543/1064 (51%), Gaps = 52/1064 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E      A G++PI
Sbjct: 8    FVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKPI 67

Query: 71   IGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IG +  +  +                     +    +  + +     EG   LI+  S  
Sbjct: 68   IGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSVA 127

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             L  +  +  R+    L    ++G+I  +G  SG I           A +    F+ +FG
Sbjct: 128  NLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 186

Query: 180  -DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    +    + ++ +A   + PL+ATN+S ++  ED +A D ++ +   
Sbjct: 187  KDNFFIELMDHGLTIETQVTNDLLTIAKKLDAPLLATNDSHYVHAEDAQAQDAMLCINSG 246

Query: 238  TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
            + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H        
Sbjct: 247  SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAFMPK 306

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                +    +E +    K   GLE R        G    D  ++ D+E  VI +M+F GY
Sbjct: 307  FPCPEG--WDETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFCGY 358

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+R+S+P
Sbjct: 359  FLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVSLP 418

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S  +++ 
Sbjct: 419  DIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKIT 478

Query: 477  KLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHAS 526
            K +P        +SL  I D +         FRE   +DP   R+ E ++ +EGL R   
Sbjct: 479  KALPPAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEAKGIEGLIRQTG 538

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HA   ++G  P++   P+  +       T F     E  GL+K DFLGL  LT++  +L
Sbjct: 539  VHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIHDTL 597

Query: 587  DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
              +       +D + IP DD ETY L++   TLG+FQL+S GMR  L+ ++PD   DI A
Sbjct: 598  KNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFNDISA 657

Query: 646  LVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIA 699
            L++LYRPGP+       Y  RKNG +KI  IHP ++  LK+    T G+IIYQEQV   A
Sbjct: 658  LIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQSAA 717

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            ++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  ++++L  F+ Y
Sbjct: 718  RILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPFSGY 777

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+  IQ++ P
Sbjct: 778  AFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQVLSP 837

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDSKKL 877
             VN    ++    + + + L AI+ VG      I+         F +  DF  RV    L
Sbjct: 838  DVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPLTAL 897

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NRR++ESL+ AGA D    +R  LL   +        +++ +     ++F+  +   ++ 
Sbjct: 898  NRRLVESLIKAGAFDSIDPNRRALLTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDGGAEA 957

Query: 938  -----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR- 991
                 +T+      +   +   E+ +LG Y S HPL   + IL  +        V   + 
Sbjct: 958  MGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVDRAKT 1017

Query: 992  ---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1018 MGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061


>gi|163782295|ref|ZP_02177293.1| DNA polymerase III alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882328|gb|EDP75834.1| DNA polymerase III alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 1167

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1060 (36%), Positives = 582/1060 (54%), Gaps = 60/1060 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +H+ YSLL+GA+ + +++ K       A+ ++D  NLF + +F +     GI+P
Sbjct: 7    DFVHLHLHTQYSLLDGAIKIEDLVKKAKEFGYRAVGMSDHGNLFGSFQFYKALKKEGIKP 66

Query: 70   IIGCQLDIDMQDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IIG +             +G            ++L+     G + L +L +  Y  +   
Sbjct: 67   IIGMEAYFTTGSRFDRKTKGSEDNITDKYNHHLILIAKNDTGLKNLFKLSTLAY-KEGFY 125

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               RI    L++ G EGLI LT    G        N +Q AE+ +  FK +FG+ L++ L
Sbjct: 126  YKPRIDYELLEKYG-EGLIALTACLKGVPTYYASINETQKAEEWVKKFKDIFGEDLFLEL 184

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ--- 242
            Q +   ++      ++++A  + + L+ATN+S +L+ ED EAH  LMA+     V     
Sbjct: 185  QSNDIDEQAVANRNLIEIAKKYGVELIATNDSHYLNPEDREAHTTLMAIQMKRTVHDMTK 244

Query: 243  -KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKE 299
               R      H+                     +                        + 
Sbjct: 245  GGFRCANDGLHFASPEEVWRKFEGKFDGWERALLNTLEVMDRTADSFDLFETSGYLLPEY 304

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                    E+ LR+ AV GL+ R+A+G   +    ++Y +RL+FEL+VI RM F+GYFLI
Sbjct: 305  QVPKDTTLEDHLRDLAVRGLKQRIAKG---QAKDTREYWERLEFELDVINRMGFAGYFLI 361

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI WAK N++PVGPGRGS AGS+ AY++ ITD+DP+R  LLFERFLNP+R+SMPD D
Sbjct: 362  VQDFINWAKNNSVPVGPGRGSAAGSLVAYSIGITDVDPIRHGLLFERFLNPERVSMPDID 421

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFCQD RD VI YV++KYG E VAQIIT+  ++AK  LRDV RAL +PYS  D+L KLI
Sbjct: 422  VDFCQDNRDRVIEYVKDKYGRENVAQIITYNVMKAKQTLRDVARALGLPYSTADQLAKLI 481

Query: 480  PNDP--AHPVSLQAIADDS--------------------RFREARLADPSVDRLLEISQK 517
            P        +SL+ +                        +FR+    +  +D+L++I+ +
Sbjct: 482  PQGDVQGTWLSLEEMYSTPMEVLKERYGAHRGDIEDNVNKFRKLCKENAEIDKLVQIALR 541

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL RH S HAAG+VI  +PLS L+P++ D R     TQF+M  +E  GL+K DFLGLK
Sbjct: 542  LEGLTRHTSLHAAGVVIAPKPLSDLIPLFYD-RDGAVATQFDMTKLEDMGLLKMDFLGLK 600

Query: 578  TLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            TLT L+   D + +R   +VD   +P DD + + LL    T G+FQLES GM++ L+ ++
Sbjct: 601  TLTELKGMRDLVKERRGEEVDFLSLPMDDPKVFELLQDGNTTGVFQLESRGMKELLKRLK 660

Query: 637  PDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
            PD  +DI+A+++LYRPGP+ +  +  Y NRK+GKE +    P ++ +LKET GVI+YQEQ
Sbjct: 661  PDSFDDIVAVLALYRPGPLKSGLVDRYINRKHGKEPVDYPFPELEEVLKETYGVIVYQEQ 720

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VM+++++L+G++  EAD LR+A+GKK K+ M++ +E+FI G+ + G  +     ++E + 
Sbjct: 721  VMRMSRVLAGFTPGEADTLRKAIGKKKKDLMEQMREKFIKGSVERGFPEDKITKLWEDIE 780

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
            KFA Y FNKSH+ AY  ISY TA+MK HYP EF A  +T E ++ + I    +DA+    
Sbjct: 781  KFASYSFNKSHSVAYGYISYWTAYMKAHYPAEFFAVKLTTEKNDNKFI-NLIKDAKIMGF 839

Query: 815  QIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
            +I+PP VN   V F +   R + + +  IKGVG   A+ I EA  D+ F  ++DF SRVD
Sbjct: 840  EILPPDVNRSDVGFIIEGEREVRFGIGRIKGVGEEAAKAITEARKDREFRGIQDFVSRVD 899

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             +K+N++VLE L+ AGA D  G  R +LL       + +   +   +    ++F   +  
Sbjct: 900  GRKVNKKVLECLIKAGAFDFTGTKRDELLD------RLSSSGKNMSSLAQNSLFGGTQKK 953

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
                I          +     E+ V+GFY SGHPLD Y+ +L        EE     +G+
Sbjct: 954  KKLDI----------NDILRMEKEVIGFYISGHPLDKYEKLLAGK-YTPIEELEGIGKGS 1002

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + LA  V + Q KKTR GS +  +   + +   E   FP
Sbjct: 1003 TLTLAGAVSNLQVKKTRNGSYMAILNLIDKSGMVEVVAFP 1042


>gi|159037409|ref|YP_001536662.1| DNA polymerase III subunit alpha [Salinispora arenicola CNS-205]
 gi|157916244|gb|ABV97671.1| DNA polymerase III, alpha subunit [Salinispora arenicola CNS-205]
          Length = 1177

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/1061 (32%), Positives = 534/1061 (50%), Gaps = 44/1061 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YS+L+GA  L ++  ++     PA+A+TD  N+  A +F ++A AAG+ P
Sbjct: 4    SFAHLHVHTEYSMLDGAARLKDLFAEVNRQGMPAVAMTDHGNMHGANDFYKQAMAAGVTP 63

Query: 70   IIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            I+G +  +  +                    +       + +      G   L +L SR 
Sbjct: 64   ILGIEAYVAPESRFHKQRVRWGRPEQKSDDVSGSGGYTHMTIWARNKVGLHNLFKLTSRS 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +      +  R+    L E   +GL+  TG  SG +           A K    ++ +FG
Sbjct: 124  FTEGFFVKWPRMDAELLAE-HADGLMATTGCPSGEVQTRLRLEQYDEALKAAARYQDIFG 182

Query: 180  -DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +  ++ +  H    +R    ++ ++++  ++P V TN++ +  +E  EAHDVL+ V  +
Sbjct: 183  KENFFLEVMDHGIDIERRVRQELAEISHKLDIPPVVTNDTHYTHQEQSEAHDVLLCVQTA 242

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
              VS  +R R     Y    ++ +         L+           +           + 
Sbjct: 243  ANVSDPNRFRFDGSGYYIKSADEMRAIDSSDLWLQGCRNTLLVAEKVDPTGMFDFRNLMP 302

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            +      + +E+  R +   GL  R   G        + + ++ ++EL VI +M F  YF
Sbjct: 303  RFPVPEGETDESWFRKETFKGLARRFPDGV------PETHVKQAEYELGVIIQMGFPSYF 356

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L+VADFIQWAK   I VGPGRGS AGS+ AYAL ITD+DPL   L+FERFLNP+R+SMPD
Sbjct: 357  LVVADFIQWAKGEGIAVGPGRGSAAGSLVAYALGITDLDPLPHGLIFERFLNPERVSMPD 416

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             DIDF + RR EVI+YV  K+G ++VAQI TFG+++AKAA++D  R L  PY+  DR+ K
Sbjct: 417  VDIDFDERRRGEVIKYVTEKWGEDKVAQIATFGTIKAKAAIKDSARVLGYPYAVGDRITK 476

Query: 478  LIPN-DPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
             +P       +             A+    R    +DP V ++++ ++ +EGL R    H
Sbjct: 477  AMPPAVMGKDIPLTGIFDPKHSRYAEAGEIRGLYESDPDVKKVIDTARGIEGLIRQTGVH 536

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAG+++   P+   +P+ R       +TQF+    E  GL+K DFLGL+ LT++  +L  
Sbjct: 537  AAGVIMSAEPIIDHIPLMRRDADGAIITQFDYPTCESLGLLKMDFLGLRNLTIIDDALKN 596

Query: 589  LA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            +    G  VDL  +P DD  TY LL+   TLG+FQL+   MR  L  M+PD  EDI A++
Sbjct: 597  IESNHGRTVDLLKLPLDDTPTYELLSRGDTLGVFQLDGGPMRSLLRTMKPDNFEDISAVL 656

Query: 648  SLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQVMQIAQL 701
            +LYRPGP+  ++   Y  RKNG ++I  IHP +   L+     T G+I+YQEQV + AQ+
Sbjct: 657  ALYRPGPMGANSHTNYALRKNGLQEITPIHPELAEPLEEILGPTYGLIVYQEQVQRAAQV 716

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            L+GYSL +AD+LRRAMGKK KE +DK+   F  G   NG S      ++++L  FADY F
Sbjct: 717  LAGYSLGKADLLRRAMGKKKKEVLDKEFVPFRDGMRGNGYSDEAIQTLWDILVPFADYAF 776

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NK+H A Y ++SY T ++K +YP E++AA +T   D+ +K+  +  + R+  IQ++PP V
Sbjct: 777  NKAHTAGYGLVSYWTGYLKANYPAEYMAALLTSVGDDKDKMALYLSECRRMGIQVLPPDV 836

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRR 880
            NT    F      I + LAAI+ VG      IM    +K  +    DF S+VD+   N++
Sbjct: 837  NTSAGPFTPVGRDIRFGLAAIRNVGANVVSAIMRCRGEKSAYTDFYDFLSKVDAVVCNKK 896

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             +ESL+ AGA D   + R  LL    +       V++       ++F           + 
Sbjct: 897  TIESLIKAGAFDSLDHPRRGLLAVHADAIDAYADVKRKEAVGQYDLFGAGFADPEVGTST 956

Query: 941  EKFS-----VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA---TIRG 992
                       +   +   E+ +LG Y S HPL   + +L K                 G
Sbjct: 957  TVMPAIVDGEWDKREKLAFEREMLGLYVSDHPLFGLEHVLGKEADTTIAALSEEGTIPDG 1016

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + LA ++   Q++ T++G      T  + A   E  FFP
Sbjct: 1017 TVVTLAGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFP 1057


>gi|296454472|ref|YP_003661615.1| DNA polymerase III subunit alpha [Bifidobacterium longum subsp.
            longum JDM301]
 gi|296183903|gb|ADH00785.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
            longum JDM301]
          Length = 1185

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/1064 (32%), Positives = 540/1064 (50%), Gaps = 52/1064 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E      A G++PI
Sbjct: 8    FVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKPI 67

Query: 71   IGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IG +  +  +                     +    +  + +     EG   LI+  S  
Sbjct: 68   IGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSVA 127

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             L  +  +  R+    L    ++G+I  +G  SG I           A +    F+ +FG
Sbjct: 128  NLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 186

Query: 180  -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    +      ++ +A     PL+ATN+S ++  ED +A D ++ +   
Sbjct: 187  KDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINSG 246

Query: 238  TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
            + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H        
Sbjct: 247  SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLAIAERCNVMFDDHEDGAFMPK 306

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                +    +E +    K   GLE R        G    D  ++ D+E  VI +M+F GY
Sbjct: 307  FPCPEG--WDETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFCGY 358

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+R+S+P
Sbjct: 359  FLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVSLP 418

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S  +++ 
Sbjct: 419  DIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKVT 478

Query: 477  KLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHAS 526
            K +P        +SL  I D +         FRE   +DP   R+ E ++ +EGL R   
Sbjct: 479  KALPPAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITEEAKGIEGLIRQTG 538

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HA   ++G  P++   P+  +       T F     E  GL+K DFLGL  LT++  +L
Sbjct: 539  VHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIHDTL 597

Query: 587  DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
              +       +D + IP DD ETY L++   TLG+FQL+S GMR  L+ ++PD   DI A
Sbjct: 598  KNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFNDISA 657

Query: 646  LVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIA 699
            L++LYRPGP+       Y  RKNG +KI  IHP ++  LK+    T G+IIYQEQV   A
Sbjct: 658  LIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQSAA 717

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            ++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  ++++L  F+ Y
Sbjct: 718  RILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPFSGY 777

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+  IQ++ P
Sbjct: 778  AFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQVLSP 837

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDSKKL 877
             VN    ++    + + + L AI+ VG      I+         F +  DF  RV    L
Sbjct: 838  DVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPLTAL 897

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NRR++ESL+ AGA D    +R  L    +        +++ +     ++F+  +   ++ 
Sbjct: 898  NRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDGGAEA 957

Query: 938  -----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR- 991
                 +T+      +   +   E+ +LG Y S HPL   + IL  +        V   + 
Sbjct: 958  MGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVDRAKT 1017

Query: 992  ---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1018 MGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061


>gi|219871559|ref|YP_002475934.1| DNA polymerase III subunit alpha [Haemophilus parasuis SH0165]
 gi|219691763|gb|ACL32986.1| DNA polymerase III subunit alpha [Haemophilus parasuis SH0165]
          Length = 1158

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1046 (39%), Positives = 601/1046 (57%), Gaps = 38/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S++ G   +  ++    A+   A+A+TD  N    + F  +A  +G
Sbjct: 2    SQPRFVHLKVHSDFSMINGLAKVKPLIKACVANNMVAMALTDFTNFCGLVRFYGEALGSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI+G  + +  +   +           +  + LL     GY  +  L+S+ Y      
Sbjct: 62   VKPIVGADVMVRPEPESE----------ELYELTLLAKNNTGYHNITLLLSKAYQQGYV- 110

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            +   +  +WL E   EG+I+L+GGS+G + +A    + Q AE+ L  +++ F +  Y++L
Sbjct: 111  EFPVVEKAWLAE-HNEGVILLSGGSNGDVGKALLKENQQEAEQLLAFYQRYFHNHYYLSL 169

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R    D  R   Q V  +    +PLVA N+ +FL + D+EAH++ +A+  S  +    R
Sbjct: 170  CRTGRSDEERYIQQAVTFSQKFAIPLVAVNDVMFLKQNDFEAHEIRVAIHDSFTLDDPKR 229

Query: 246  -PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              + +   Y ++  EM  +F+DLP+A+ENT+ IA+RC+  +++       +         
Sbjct: 230  PQKYSEQQYFRSEDEMCQLFADLPQAIENTLFIAQRCNVTIRLGE-----YFLPNFPTGD 284

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  KA  GLE RLA        +      Y +RL  EL+VI +M F GYFLIV 
Sbjct: 285  LSTEDFLVKKAKEGLEERLAFLFPDPDVRASKRSVYDERLQVELDVINQMGFPGYFLIVM 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 345  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PYS VDR+ KLIP 
Sbjct: 405  FCMDGRDRVIEHVSETYGCQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPP 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E    D  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 465  DPGMTL-AKAFEAEPKLPELYDTDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTAITD 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR        V
Sbjct: 524  FSPLYCDSYGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLEKEGKPPV 583

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD +T+ LL    T  +FQLES GM+  +  +QP   EDIIALV+L+RPGP++
Sbjct: 584  RIESIPLDDEKTFKLLKAAKTTAVFQLESRGMKDLISRLQPSNFEDIIALVALFRPGPLE 643

Query: 657  NIVVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+GKE I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 644  SGMVQNFIDRKHGKEPIAYPDAQYQHESLQPILEPTYGIIVYQEQVMQIAQVLAGYTLGG 703

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM  Q+  F  GA K GI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 704  ADLLRRAMGKKKPEEMAAQRATFEEGAKKQGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 763

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT EMDN +KI  F  +     + ++PP +N+    F 
Sbjct: 764  ALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDINSGKHRFS 823

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V +   I Y L AIKGVG      ++EA   D  F  L D  +RVD +K+NRR  E L+ 
Sbjct: 824  VNEKGEIVYGLGAIKGVGEGPIDAMLEARNKDGIFKDLFDLTARVDLRKVNRRTFEGLIM 883

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946
            AGA D  G  R  L+++L++  + +    K       ++F     T  + +         
Sbjct: 884  AGAFDKLGPHRAALMKNLEDALRASDQHNKMEALGQSDMFGVLTETPEEVQNAYANTPKW 943

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                  +NE+  LG Y SGHP+  +   L         E   T RG    +A +++  + 
Sbjct: 944  TEQTILDNEKATLGLYLSGHPVGRFLKELAHYAPNKLNEVQPTYRGQTTTVAGLIMGARI 1003

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T+KGSRIG  T  + + + +   F
Sbjct: 1004 ATTKKGSRIGIATIEDRSGKMDLTLF 1029


>gi|317481576|ref|ZP_07940612.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916936|gb|EFV38322.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA]
          Length = 1185

 Score =  746 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/1064 (32%), Positives = 543/1064 (51%), Gaps = 52/1064 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E      A G++PI
Sbjct: 8    FVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKPI 67

Query: 71   IGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IG +  +  +                     +    +  + +     EG   LI+  S  
Sbjct: 68   IGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSVA 127

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             L  +  +  R+    L    ++G+I  +G  SG I         + A +    F+ +FG
Sbjct: 128  NLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFEEALRAAGEFQDIFG 186

Query: 180  -DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    +    + ++ +A   + PL+ATN+S ++  ED +A D ++ +   
Sbjct: 187  KDNFFIELMDHGLTIETQVTNDLLTIAKKLDAPLLATNDSHYVHAEDAQAQDAMLCINSG 246

Query: 238  TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
            + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H        
Sbjct: 247  SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAFMPK 306

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                +    +E +    K   GLE R        G    D  ++ D+E  VI +M+F GY
Sbjct: 307  FPCPEG--WDETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFCGY 358

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+R+S+P
Sbjct: 359  FLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVSLP 418

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S  +++ 
Sbjct: 419  DIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKIT 478

Query: 477  KLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHAS 526
            K +P        +SL  I D +         FRE   +DP   R+ E ++ +EGL R   
Sbjct: 479  KALPPAATGGKDISLHDIFDPAAKRYAEAREFRELYDSDPDTKRITEEAKGIEGLIRQTG 538

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HA   ++G  P++   P+  +       T F     E  GL+K DFLGL  LT++  +L
Sbjct: 539  VHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIHDTL 597

Query: 587  DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
              +       +D + IP DD ETY L++   TLG+FQL+S GMR  L+ ++PD   DI A
Sbjct: 598  KNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFNDISA 657

Query: 646  LVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIA 699
            L++LYRPGP+       Y  RKNG +KI  IHP ++  LK+    T G+IIYQEQV   A
Sbjct: 658  LIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQSAA 717

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            ++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  ++++L  F+ Y
Sbjct: 718  RILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPFSGY 777

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+  IQ++ P
Sbjct: 778  AFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQVLSP 837

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDSKKL 877
             VN    ++    + + + L AI+ VG      I+         F +  DF  RV    L
Sbjct: 838  DVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPLTAL 897

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NRR++ESL+ AGA D    +R  L    +        +++ +     ++F+  +   ++ 
Sbjct: 898  NRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDGGAEA 957

Query: 938  -----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR- 991
                 +T+      +   +   E+ +LG Y S HPL   + IL  +        V   + 
Sbjct: 958  MGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVDRAKT 1017

Query: 992  ---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1018 MGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061


>gi|312132448|ref|YP_003999787.1| dnae [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773120|gb|ADQ02608.1| DnaE [Bifidobacterium longum subsp. longum BBMN68]
          Length = 1185

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/1064 (32%), Positives = 540/1064 (50%), Gaps = 52/1064 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E      A G++PI
Sbjct: 8    FVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKPI 67

Query: 71   IGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IG +  +  +                     +    +  + +     EG   LI+  S  
Sbjct: 68   IGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSVA 127

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             L  +  +  R+    L    ++G+I  +G  SG I           A +    F+ +FG
Sbjct: 128  NLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 186

Query: 180  -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    +      ++ +A     PL+ATN+S ++  ED +A D ++ +   
Sbjct: 187  KDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINSG 246

Query: 238  TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
            + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H        
Sbjct: 247  SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLAIAERCNVMFDDHEDGAFMPK 306

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                +    +E +    K   GLE R        G    D  ++ D+E  VI +M+F GY
Sbjct: 307  FPCPEG--WDETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFCGY 358

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+R+S+P
Sbjct: 359  FLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVSLP 418

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S  +++ 
Sbjct: 419  DIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKVT 478

Query: 477  KLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHAS 526
            K +P        +SL  I D +         FRE   +DP   R+ E ++ +EGL R   
Sbjct: 479  KALPPAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITEEAKGIEGLIRQTG 538

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HA   ++G  P++   P+  +       T F     E  GL+K DFLGL  LT++  +L
Sbjct: 539  VHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIHDTL 597

Query: 587  DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
              +       +D + IP DD ETY L++   TLG+FQL+S GMR  L+ ++PD   DI A
Sbjct: 598  KNIEANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFNDISA 657

Query: 646  LVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIA 699
            L++LYRPGP+       Y  RKNG +KI  IHP ++  LK+    T G+IIYQEQV   A
Sbjct: 658  LIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQSAA 717

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            ++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  ++++L  F+ Y
Sbjct: 718  RILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPFSGY 777

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+  IQ++ P
Sbjct: 778  AFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQVLSP 837

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDSKKL 877
             VN    ++    + + + L AI+ VG      I+         F +  DF  RV    L
Sbjct: 838  DVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPLTAL 897

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NRR++ESL+ AGA D    +R  L    +        +++ +     ++F+  +   ++ 
Sbjct: 898  NRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDGGAEA 957

Query: 938  -----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR- 991
                 +T+      +   +   E+ +LG Y S HPL   + IL  +        V   + 
Sbjct: 958  MGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVDRAKT 1017

Query: 992  ---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1018 MGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061


>gi|16126169|ref|NP_420733.1| DNA polymerase III subunit alpha [Caulobacter crescentus CB15]
 gi|221234940|ref|YP_002517376.1| DNA polymerase III subunit alpha [Caulobacter crescentus NA1000]
 gi|68565608|sp|Q9A700|DPO3A_CAUCR RecName: Full=DNA polymerase III subunit alpha
 gi|239977223|sp|B8GWS6|DPO3A_CAUCN RecName: Full=DNA polymerase III subunit alpha
 gi|13423381|gb|AAK23901.1| DNA polymerase III, alpha subunit [Caulobacter crescentus CB15]
 gi|220964112|gb|ACL95468.1| DNA polymerase III alpha subunit [Caulobacter crescentus NA1000]
          Length = 1143

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 486/1024 (47%), Positives = 671/1024 (65%), Gaps = 19/1024 (1%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+V S+YSLLEGA+  + I    A  + PA  + D  NLF ALE+S  A  AG+QPI
Sbjct: 9    FVHLRVRSAYSLLEGAIKADQIGKLAAEAKMPAAGLADRANLFGALEYSSYAKDAGVQPI 68

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC + +     + +       +   P+++LL     GY  L EL S  YL         
Sbjct: 69   IGCAIPV-----VGIGGGPTERWARAPTLMLLAQNERGYLNLSELSSIAYLDSAELPEPV 123

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +  + + E  +EGLI+L+GG+ GP+D  F    +  A   L    ++FGDR YV LQRH 
Sbjct: 124  VPWAKVAE-HSEGLILLSGGTDGPVDALFAAGKTAEASAALAEMHRVFGDRFYVELQRHG 182

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +   E  +V  AY H++PLVATN+  F     Y+AHD L+ ++    V Q +R RVT
Sbjct: 183  LPRQAAAEPGLVNWAYDHDVPLVATNDVYFAKPGFYDAHDALLCISDGAFVGQDERRRVT 242

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P+H+ K   EM  +F+DLPEA +NT++IARRC+             +        + E  
Sbjct: 243  PEHWFKPAEEMRKLFADLPEACDNTLDIARRCA----FMVHKRDPILPSFPTGDGRNEAE 298

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL ++A  GL++RL    +      ++Y +RLDFEL +I +M F GYFLIV+DFI+W K 
Sbjct: 299  ELEHQAREGLKMRLE--GLTLSAPEEEYWKRLDFELGIIKKMGFPGYFLIVSDFIKWGKA 356

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            + IPVGPGRGSGAGS+ A+ LTITD+DPLRF LLFERFLNP+R+SMPDFD+DFCQ+RR+E
Sbjct: 357  HGIPVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDVDFCQERREE 416

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS- 488
            VI YVQ KYG +RVAQIITFGSLQA+A LRDVGR +Q+P   VDRLCK++PN+PA PV+ 
Sbjct: 417  VISYVQEKYGRDRVAQIITFGSLQARAVLRDVGRVMQLPLGLVDRLCKMVPNNPAAPVTL 476

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             QAI  + R ++A+  D +V   L+++ +LEGL+R+ASTHAAG+VIGDRPL+QL P+Y+D
Sbjct: 477  AQAIDLEPRLKQAKKEDANVSACLDVALQLEGLFRNASTHAAGLVIGDRPLTQLTPLYKD 536

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
             RSDLP TQFNMKW+E AGL+KFDFLGLKTLT+L +++  L +RG ++DL  +PFDD +T
Sbjct: 537  PRSDLPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAVKHLKKRGFEIDLGKLPFDDAKT 596

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            Y LL +  T+G+FQLES GMR  L  M+   IE+I AL+SLYRPGP+DNI  + + K G+
Sbjct: 597  YELLASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMDNIDTFVDCKFGR 656

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            + + ++HP ++ +LKET GVI+YQEQVMQIAQ+L+GYSL EAD+LRRAMGKK KEEMD Q
Sbjct: 657  KPVDTLHPSLEAVLKETYGVIVYQEQVMQIAQILAGYSLGEADLLRRAMGKKKKEEMDLQ 716

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K RF+SGA +  + +  + +IFEL+AKFA YGFNKSHAAAYA ISYQTAW+K + PVEF 
Sbjct: 717  KIRFVSGAKEKNVPEEQSGSIFELVAKFAGYGFNKSHAAAYAFISYQTAWLKANTPVEFF 776

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            AASM+L++ N +K+  F QDAR+F I +  P VN    DF+V +  + Y+L AI+ VG  
Sbjct: 777  AASMSLDLSNTDKLAVFHQDARRFGITVRAPDVNRSGADFEVENGEVLYALGAIRNVGLE 836

Query: 849  TARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              +H++   A+  PF  + DF  R+D +++N+R +E+L  AGA D    +R Q++ S D 
Sbjct: 837  AMKHLVAVRAEGGPFRDVFDFVERIDPRQVNKRAIENLARAGAFDSIHKNRAQIVASADV 896

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +  +AQ    +R      +F  + G  + +  L K    N     + E   +GFY +GHP
Sbjct: 897  LIAHAQSCHADRQGGQGGLFGSDPG--AGRPRLSKTENWNQVDLLDEELSAVGFYLTGHP 954

Query: 968  LDVYKPILRKMGIKGYEESVATIR-GNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            L+    +LR+       E++A    G    R+  +V  +Q++ ++ G +  +V+ S+P  
Sbjct: 955  LEDMVGMLRRRRTVMLAEAMAQAEAGAEAFRMCGVVRRRQERASQSGEKFAFVSLSDPTG 1014

Query: 1026 EYEA 1029
            EYE 
Sbjct: 1015 EYEV 1018


>gi|167753692|ref|ZP_02425819.1| hypothetical protein ALIPUT_01973 [Alistipes putredinis DSM 17216]
 gi|167658317|gb|EDS02447.1| hypothetical protein ALIPUT_01973 [Alistipes putredinis DSM 17216]
          Length = 1287

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/1105 (31%), Positives = 555/1105 (50%), Gaps = 94/1105 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL VH+ YS+L+GA +++ ++ +  A    A+AITD  N++    F   A  AGI+
Sbjct: 70   PDFVHLHVHTQYSILDGAAAISPLIKRAKALGMKALAITDHGNMYGVKNFHDVATDAGIK 129

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+GC+  + +++  +     K        ++LL     GY  L ++VS  +  +     
Sbjct: 130  PILGCETYV-VRNRFEKDKDEKAGD----HLILLAKNLTGYHNLCKIVSYSFT-EGFYYK 183

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    L++   EGLI  +    G + +A   N  + AE+ +  FK +FGD  Y+ LQ 
Sbjct: 184  PRIDKKLLEQYH-EGLICCSACLGGEVPQAIMRNDMEEAEQVVRWFKSIFGDDYYLELQL 242

Query: 189  HRGYDRY-----------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            H   D                 +++L+    +  + +N+  F+  ED  AHD L+ +   
Sbjct: 243  HPSGDPRKDADVYENQLLVNKALLELSAKCGVKYICSNDVHFILAEDAVAHDHLICLNTG 302

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI------------- 284
              +   +R R T   YLK+  EM  +F D PEAL  T+EIA +                 
Sbjct: 303  RDLDDPNRMRYTFQEYLKSPEEMAQLFPDHPEALATTLEIADKVEEYKLTHAPLMPNFPP 362

Query: 285  ------------------LQVHAPILPRFIEKECDDIQKEEEN---------------EL 311
                              ++    +         +++    E                 L
Sbjct: 363  PPEFHMPFEELRESLVKKIEDQEELARIDACHSVEELDAWAEESKERSEKLMTAKQFCYL 422

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            ++    G  +R           +++  +R+ +EL+ I  M F GYFLIV D+I+ A++  
Sbjct: 423  KDLTYKGAHLRYG------AELSEEVEKRIRYELSTIEWMGFPGYFLIVWDYIRAAREMG 476

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGSV AY L IT+IDPL++ LLFERFLNP+R+S+PD D+DF +D RD+V+
Sbjct: 477  VSVGPGRGSAAGSVVAYCLKITNIDPLKYDLLFERFLNPERISLPDVDVDFDEDGRDDVL 536

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND------PAH 485
             Y  +KYG +RVAQI+TFG++  K A+RDV R  ++  S+ DRL KL+P+          
Sbjct: 537  HYCVHKYGQKRVAQIVTFGTMAPKLAIRDVARVQKLALSESDRLAKLVPDKVTPDKKAGE 596

Query: 486  PVSLQAIADDSRFREARLADPS-VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                    +       R +    +   L+ ++KLEG  R    HA G++IG   L    P
Sbjct: 597  TPFDFCYKESPELAAERESPNQLIRNTLKYAEKLEGSIRQTGVHACGVIIGQDDLENFAP 656

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            M     +DL V +F  K +E  GLIK DFLGL+TL++++ ++  +    G+ VD+  IP 
Sbjct: 657  MAIAKDADLNVVEFEGKEVESVGLIKMDFLGLRTLSIIKDAVTNVKNVHGIDVDIDNIPL 716

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  TY + +   T G+FQ ES GM++ L  ++P+  ED+IA+ +LYRPGP++ I  +  
Sbjct: 717  DDAPTYEVFSRGDTTGLFQFESPGMKKHLRNLKPNRFEDLIAMNALYRPGPMEYIPNFIA 776

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G E +      ++  L +T G+ +YQEQVM ++Q L+G++  EAD LR+AMGKK + 
Sbjct: 777  RKHGLEPVTYDIADMEEYLSDTYGITVYQEQVMLLSQKLAGFTGGEADTLRKAMGKKQRA 836

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +DK K +FI G SK G    I   I+     FA Y FNKSH+  YA I+YQT ++K HY
Sbjct: 837  VLDKMKPKFIEGCSKRGHDAKICEKIWGDWEAFASYAFNKSHSTCYAYIAYQTGYLKAHY 896

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAI 842
            P EF+AA ++  + ++++I  +  + ++  I+++ P +N    +F       + + LAA+
Sbjct: 897  PSEFMAALLSRNLSDIKQITLYMNECKRMGIRVLGPDINESLNNFSSNKAGDVRFGLAAV 956

Query: 843  KGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQ 900
            KGVG      I+     +  F  + DF  RV+   +NR+ LE++ +AG  D   G+ R +
Sbjct: 957  KGVGEAAVESIVAERNKNGKFKDIYDFFERVNYTAVNRKCLENIAYAGGFDSISGFHRCK 1016

Query: 901  LLQS----------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-ITLEKFSVENSS 949
               +          ++ + +Y Q  +  + N  +++F   +G    +   +      ++ 
Sbjct: 1017 FFGTDLRDSSSTTFIEQLVRYGQRFQSEKDNAQQSLFGGGEGVVDIQHPVIPACQDWSTL 1076

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQK 1007
                 E+ ++G Y S HPLD Y  I+R M      +       RG  I +A MV++ Q  
Sbjct: 1077 ETLGKEREMIGLYLSAHPLDDYAVIIRNMCKTQLSDLDNLESLRGQEIAVAGMVIATQNL 1136

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T+ G   G  T  +    +E   F
Sbjct: 1137 VTKTGKPWGKFTLEDYNGTHEFALF 1161


>gi|254419705|ref|ZP_05033429.1| DNA polymerase III, alpha subunit subfamily, putative [Brevundimonas
            sp. BAL3]
 gi|196185882|gb|EDX80858.1| DNA polymerase III, alpha subunit subfamily, putative [Brevundimonas
            sp. BAL3]
          Length = 1153

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 496/1037 (47%), Positives = 678/1037 (65%), Gaps = 24/1037 (2%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S  FVHL+V S+YSLLEGA+    +    A    PA+AI D  NLF ALEFSQ    AG
Sbjct: 6    NSQGFVHLRVRSAYSLLEGAIKAGKLGKLAADAGMPAVAIADRTNLFGALEFSQYTRDAG 65

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +QPII C L +       +       +   P++VLLV    G++ L  L S  YL     
Sbjct: 66   VQPIIACALPV-----FGIGGHQAVRWAKTPTVVLLVQNEAGWRNLCALSSSAYLDAGEM 120

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +    +    +EGLI+L+GG  GP+D  F    +      L T K  FGDR YV L
Sbjct: 121  AEPGVAWDQVVAR-SEGLILLSGGPDGPVDPLFAQGKTNEGAAALATMKSAFGDRFYVEL 179

Query: 187  QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRH   D  R E  +V+ AY HE PLVATN+  +      ++HD L+ +A      Q+DR
Sbjct: 180  QRHGLEDEKRAEPGLVEWAYAHETPLVATNDVYYAKAAQAKSHDALLCIADGAFTGQEDR 239

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R+T +H+ K+   M  +F+DLPEA +NT++IARRC+F++  HAPILPRF         +
Sbjct: 240  RRITGEHWFKSAEAMRDLFADLPEACDNTIDIARRCAFLVNTHAPILPRFDT----GAGR 295

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E +EL ++A  GL+VRL  G I       +Y  RL++E+ +I +M F GYFLIV+DFI+
Sbjct: 296  SEADELAHQAREGLKVRL--GQITPAVPEAEYWSRLEWEVGIIQQMGFPGYFLIVSDFIK 353

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK++ IPVGPGRGSGAGS+ A++LTITD+DPLRF LLFERFLNP+R+SMPDFDIDFCQ+
Sbjct: 354  WAKEHGIPVGPGRGSGAGSLVAWSLTITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQE 413

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI YVQ++YG +RVAQIITFG+LQA+A LRDVGR LQMP  QVDRLCK++PN+PA+
Sbjct: 414  RREEVIDYVQDRYGKDRVAQIITFGTLQARAVLRDVGRVLQMPLGQVDRLCKMVPNNPAN 473

Query: 486  PVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            PV+  QAI  + R +EAR A+P+V  LLE + +LEGLYR+ASTHAAGIVIGDRPL +LVP
Sbjct: 474  PVTLAQAIDLEPRLKEARDAEPAVRTLLETALELEGLYRNASTHAAGIVIGDRPLVELVP 533

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            +Y+D RS +P +QFNMKW+E AGL+KFDFLGLKTLT+L ++  +L +RG   D + +P D
Sbjct: 534  LYQDPRSTIPASQFNMKWVEPAGLVKFDFLGLKTLTVLDRARGYLERRGAAQDWNGLPLD 593

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY L+ +  T+G+FQLES GMR  L  M+   IE+I AL+SLYRPGP++ I  Y +R
Sbjct: 594  DARTYELMASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMEMIDTYIDR 653

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K G+ ++  +HP +  +L ET GVIIYQEQVM+IAQ+L+GYSL EAD+LRRAMGKK KEE
Sbjct: 654  KFGRAEVDYLHPSLKEVLTETYGVIIYQEQVMKIAQILAGYSLGEADLLRRAMGKKKKEE 713

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MD Q+ RF+ GA +  + +T + +IF+L+AKFA YGFNKSHAAAYA+IS+QT W+K ++P
Sbjct: 714  MDFQRARFVKGALEKTVPETQSGSIFDLVAKFAGYGFNKSHAAAYALISFQTGWLKANHP 773

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLA 840
            VEF AASM+L++ N +K+  F QDA++F++ ++PP +N    DF V  +     + Y+L 
Sbjct: 774  VEFFAASMSLDLSNTDKLAVFYQDAKRFDVPVLPPDLNRSSADFDVAWDDSRGVVLYALG 833

Query: 841  AIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AI+ VG    +H++E       F  + DF  RVD + +N+R LE L  AGA D    +R 
Sbjct: 834  AIRNVGLEAMKHVIEVRETGGRFADIFDFLERVDPRSVNKRALEGLAKAGAFDSIHPNRR 893

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            QL++  D +  Y Q V   R +   ++F  ++     +  L+         R ++E   +
Sbjct: 894  QLVEQADVLMAYCQSVAAERASSQVSLFGGDQAHVG-RPRLKSVEPWVGPERLDHELSAV 952

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRK-GSRIG 1016
            GFY SGHPLD     L++  +    E++          ++A +V  KQ++ + + G +  
Sbjct: 953  GFYLSGHPLDEMTSALKRKRVTFVAEAIPLAESGHEAFQMAGVVRRKQERASARTGEKFA 1012

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +VTFS+P  E+E   FP
Sbjct: 1013 FVTFSDPTGEFEC-LFP 1028


>gi|271964395|ref|YP_003338591.1| DNA polymerase III subunit alpha [Streptosporangium roseum DSM 43021]
 gi|270507570|gb|ACZ85848.1| DNA polymerase III alpha subunit [Streptosporangium roseum DSM 43021]
          Length = 1173

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1058 (33%), Positives = 534/1058 (50%), Gaps = 39/1058 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL VH+ YS+L+GA  L  +  ++     PAIAITD  N+  A +F ++A  AGI
Sbjct: 2    SDSFVHLHVHTEYSMLDGAARLKQMFKQVGDLGMPAIAITDHGNMHGAYDFYKQATGAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +P+IG +  +      +                +       + +    A+G   L++L S
Sbjct: 62   KPVIGIEAYVAPASRHQKKPVLWGEPHQKRDDVSAGGYYTHMTIWAKNAKGLTNLMKLSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
            R Y     ++  R+    L E  +EGL+  TG  SG +           A      F++L
Sbjct: 122  RAYTEGFVRKWARMDAETLAE-HSEGLMATTGCPSGEVQTRLRLGQYDEALAAAAKFQEL 180

Query: 178  FG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG D  Y+ +  H    +R     + +++    +P + TN+S +  E D  +HD L+ + 
Sbjct: 181  FGRDNYYLEIMDHGLDIERRVRDGLTRISRDLNIPPLVTNDSHYTYESDATSHDALLCIQ 240

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                ++  DR R     Y    ++ +          E           +           
Sbjct: 241  TGKQLADPDRFRFDGSGYYIKTADEMRAVDSSDLWAEGCRNTLLVAEKVDPTGMFGFKNL 300

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +          EE+  R +   G+E R  +G        +++R +++FE+NVI +M F  
Sbjct: 301  MPTFPIPEGDSEESWFRKEIWKGMERRFPEGVD------EEHRAQIEFEMNVILQMGFPS 354

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+VADFI WAK N I VGPGRGS AGS+ AYAL ITD+DPL   L+FERFLNPDR+SM
Sbjct: 355  YFLVVADFIMWAKNNGIRVGPGRGSAAGSLAAYALGITDLDPLPHGLIFERFLNPDRVSM 414

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD DIDF + RR +VIRYV  KYG ++VA I TFG+++AKAA++D  R L  PY+  D++
Sbjct: 415  PDVDIDFDERRRGDVIRYVTEKYGADKVAMIATFGTIKAKAAIKDAARVLGHPYALGDKV 474

Query: 476  CKLIPN-DPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
             K  P       +              +    R+    D  V   +++ + LEGL R   
Sbjct: 475  SKAFPPAVMGKDIPLSGIFDKDHPRYNEAGELRKLYDEDVDVKSAMDLGRGLEGLIRQTG 534

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HAAG+++    L+  +P+ R     + +TQF+    E  GL+K DFLGL+ LT++   L
Sbjct: 535  VHAAGVIMSSEVLTDYIPIMRRDSDGVIITQFDYPTCETLGLLKMDFLGLRNLTIIDDCL 594

Query: 587  DF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
                A  G K+DL  +P DD +TY LL    TLG+FQL+  GMR  L  M+PD  EDI A
Sbjct: 595  KMIEANTGTKIDLLKLPLDDRKTYELLGRGDTLGVFQLDGGGMRSLLRLMKPDNFEDISA 654

Query: 646  LVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQIA 699
            + +LYRPGP+  D+   Y  RKNG + I  IHP     +  +L  T G+I+YQEQVM IA
Sbjct: 655  VGALYRPGPMGADSHTNYALRKNGLQDITPIHPEFEESLQEILGTTHGLIVYQEQVMAIA 714

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q ++G+SL +AD+LRRAMGKK K E+DKQ E F  G   NG S      ++++L  F+DY
Sbjct: 715  QKVAGFSLGKADLLRRAMGKKKKSELDKQFESFEQGMKDNGYSAAAIKTLWDILLPFSDY 774

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNK+H+AAY ++SY TA++K +YP E++A  +T   D+ +K   +  + R+  I+++PP
Sbjct: 775  AFNKAHSAAYGLVSYWTAYLKANYPSEYMAGLLTSVKDDKDKSALYLNECRRMGIKVLPP 834

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLN 878
             VN    DF      + + L+AI+ VG      I+ A  +K  F   +DF  +V     N
Sbjct: 835  DVNDSDFDFTPRGTDVRFGLSAIRNVGGNVVDGIIAARREKTRFADFKDFLRKVPMVVCN 894

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            +RV+ESL+ AGA D F + R  L+   +        ++KN     +++F   +G      
Sbjct: 895  KRVIESLIKAGAFDSFAHERKGLVMVHEQAVDSIIGIKKNEAQGQDSLFGAVEGAEDQTF 954

Query: 939  TLEKFS-VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIRGNNI 995
             ++      + +   + E+ +LG Y S HPL   + IL                  G  +
Sbjct: 955  DVQIPPGEWDKTTLLQFEREMLGLYVSDHPLFGVEHILASGADCSIAALQDENRSDGQVV 1014

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +  ++   Q+K T+KG         +     E   FP
Sbjct: 1015 TVGGILSGVQRKVTKKGDTWVLTMLEDLEGAIEVMIFP 1052


>gi|320540046|ref|ZP_08039702.1| putative DNA polymerase III alpha subunit [Serratia symbiotica str.
            Tucson]
 gi|320029895|gb|EFW11918.1| putative DNA polymerase III alpha subunit [Serratia symbiotica str.
            Tucson]
          Length = 1162

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1051 (39%), Positives = 601/1051 (57%), Gaps = 41/1051 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P F+HL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  
Sbjct: 1    MAE-PRFIHLRVHSDYSMIDGLAKIGPLVKRAAALAMPALAITDFTNLCGLVKFYGSAHG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG  L +          Q       +  + +L + + GYQ L  L+SR Y    
Sbjct: 60   VGIKPIIGADLHV----------QSDVLGDELAQLTVLATNSAGYQNLTLLISRAYQRGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            G     I   WL E   EGL++L+G   G + +     +    E+ L  +++ F D  Y+
Sbjct: 110  GAAGPIIDRDWLIE-HREGLLLLSGARHGDVGKFLLRGNQPQVEQCLDFYQQYFPDCYYL 168

Query: 185  NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D        V LA    LP+VATN+  FL E+D++AH++ +A+     +   
Sbjct: 169  ELIRTGRPDEENYLHAAVTLATERGLPVVATNDVRFLEEDDFDAHEIRVAIHEGFTLDDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  +P  Y+++  +M  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 229  KRPRNYSPQQYMRSEDDMCELFADIPEALLNSVEIAKRCNVTIRLGE-----YFLPQFPT 283

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE     L      +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284  GDMTTEDFLVLKSKEGLEERLTFLFPDPEVRAQRRPEYDERLDVELKVINQMGFPGYFLI 343

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N++PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344  VMEFIQWSKDNHVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC ++RD VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404  VDFCMEKRDLVIDHVSEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIAKLV 463

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464  PPDPGMTLE-KAFAAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
            +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TL+++  +L+ +  R       
Sbjct: 523  TDFAPLYCDAEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLSIIDWALEMINARCAKSGEP 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP +D +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583  PIDIAAIPLNDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            + + +V       +   +     I   H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643  LQSGMVDNFIDRKHGREEISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK   EM KQ+  F  GA   GI   ++V IF+L+ KFA YGFNKSH+A
Sbjct: 703  GGADMLRRAMGKKNPVEMAKQRGGFEDGAKLRGIDGELSVKIFDLVEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    
Sbjct: 763  AYALVSYQTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYR 822

Query: 828  FKV-GDNRIYYSLAAIKGVGTTTARHIMEAS---ADKPFDSLEDFCSRVDSKKLNRRVLE 883
            F V  +  I Y + AIKGVG      I+EA        F  L D C+R D KKLNRR+LE
Sbjct: 823  FHVNNEGEIVYGIGAIKGVGEGPIEAIIEARNSGEQGYFKDLFDLCARSDIKKLNRRILE 882

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEK 942
             L+ +GALD  G  R  L+ SL +  K A    K       ++F          + +   
Sbjct: 883  KLIMSGALDRLGPHRAALMNSLGDALKAADQHAKAEAIGQVDMFGVLSEAPEQVEQSYAN 942

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMV 1001
                   V  + E+  LG Y +GHP+  Y   + +  G +  ++   T RG       +V
Sbjct: 943  VPRWQEQVVLDGERETLGLYLTGHPITQYLKEIERYAGGQRLKDMHPTDRGKMTTAVGLV 1002

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V+ +   T++G+RIG  T  + +   E   F
Sbjct: 1003 VAARVMVTKRGNRIGICTLDDRSGRLEVMLF 1033


>gi|167618438|ref|ZP_02387069.1| DNA polymerase III subunit alpha [Burkholderia thailandensis Bt4]
          Length = 1113

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1044 (39%), Positives = 607/1044 (58%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI GC + I  +D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   AGIKPIAGCDVWITNRDDRDKP----------SRLLLLVKNKRGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL+    +GL+ L+G   G I  A    +   A +    + ++F    Y+
Sbjct: 110  YRGRAELDASWLEGELADGLLALSGAQQGDIGLALAAGNEAAARRHAQRWAQVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LP F   +   
Sbjct: 230  RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GLE RLAQ       +      Y QRLDFE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSQEGLEKRLAQLYPDGAEREAQRDKYNQRLDFECGTIKKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++   +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLPPDINQSHYRFEPVAQAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ A
Sbjct: 826  GKPSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GALD    +R QLL S+    + A+    N       +F    G  + +  L      + 
Sbjct: 886  GALDSLHANRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + + 
Sbjct: 943  KRRLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022


>gi|257464972|ref|ZP_05629343.1| DNA polymerase III subunit alpha [Actinobacillus minor 202]
 gi|257450632|gb|EEV24675.1| DNA polymerase III subunit alpha [Actinobacillus minor 202]
          Length = 1157

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1045 (39%), Positives = 602/1045 (57%), Gaps = 38/1045 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            SP FVHL+VHS +S++ G   + +++   AAD   A+A+TD  N    ++F  ++ A+GI
Sbjct: 2    SPRFVHLKVHSDFSMINGLAKVKSLVKAAAADNMVAMALTDFTNFCGLVKFYGESLASGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIG  + +          + ++    V  + LL    +GY  +  L+S  Y       
Sbjct: 62   KPIIGADILV----------RSESESEEVYELTLLAKNNQGYHNITLLLSMAYQQGYV-D 110

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +  +WL E   EG+I+L+GG SG + +A    + + AE     +++ F +  Y ++ 
Sbjct: 111  LPLVEKAWLAEY-NEGIIVLSGGRSGDVGKALLKENVKEAENLTAFYQQYFPNHFYFSVC 169

Query: 188  RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R    D  R  S +V  A    +P+VA N+ +FL E+D++AH++ +A+  S  +    RP
Sbjct: 170  RTGRADEERYISAIVPFANQKGIPIVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRP 229

Query: 247  R-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +  +P  Y ++  EM  +F+DLP ALENT+EIA+RCS  +++                  
Sbjct: 230  KKYSPQQYFRSEEEMCRLFADLPSALENTIEIAKRCSVTVRLGEYF-----LPNFPTGDL 284

Query: 306  EEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E  L  K+  GLE RLA        +    + Y +RL  EL+VI +M F GYFLIV +
Sbjct: 285  TTEEFLIKKSEEGLEERLAFLFPDPEERASKREVYDKRLQVELDVINQMGFPGYFLIVME 344

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 345  FIQWSKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDF 404

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C D RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PYS VDR+ KLIP D
Sbjct: 405  CMDGRDRVIDHVAETYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPD 464

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +  +A A + +  E   +D  V  L+++++KLEG+ R+A  HA G+VI    ++  
Sbjct: 465  PGMTLE-KAFAAEPKLPELYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDF 523

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVD 597
             P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ +  R        V 
Sbjct: 524  SPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINARLTAEGKEPVR 583

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP +D +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+++
Sbjct: 584  IESIPLNDKKSFDLLLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLES 643

Query: 658  IVVYNNRKNGKEK-------IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V N       K           H  + P+L+ T GVI+YQEQVMQIAQ L+GY+L  A
Sbjct: 644  GMVQNFIDRKHGKEEVSYPDAQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGA 703

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM  Q+E F  GA +  I   +A+ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 704  DLLRRAMGKKKPEEMAAQREIFEKGAIEKNIDGELAMKIFDLVEKFAGYGFNKSHSAAYA 763

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQT W+K HYP EF+AA M+ EMDN +KI     +     + ++PP +N+    F V
Sbjct: 764  LVSYQTLWLKAHYPAEFMAAVMSSEMDNTDKIVGLYDECINMGLTVVPPDINSGKHHFSV 823

Query: 831  GD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             +   I Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR  ++L+ +
Sbjct: 824  NEKGEIVYGLGAIKGVGEGPIDAILEARQKDGIFKDLFDLTARVDLKKINRRTFDALIMS 883

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVEN 947
            G+LD  G  R  L+++L++  K +    K       ++F     T  + +         +
Sbjct: 884  GSLDKLGPHRAALMKNLEDALKASDQHTKMEALGQSDMFGVLTETPEEVQNAYANTPKWS 943

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              V  + E+  LG Y SGHP+  +   L         E   T RG  + +A +V+S +  
Sbjct: 944  EQVVLDGERATLGLYLSGHPIGRFLKELAHYAPVRLNELQPTYRGQMVTVAGIVMSYRVA 1003

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++GSRIG  T  + + + +   F
Sbjct: 1004 VTKRGSRIGIATIEDRSGKLDITLF 1028


>gi|167580315|ref|ZP_02373189.1| DNA polymerase III subunit alpha [Burkholderia thailandensis TXDOH]
          Length = 1094

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1044 (39%), Positives = 607/1044 (58%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI GC + I  +D+                ++LLV    GY  L +L+S+ +L +Q
Sbjct: 60   AGIKPIAGCDVWITNRDDRDKP----------SRLLLLVKNKRGYLNLCKLLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL+    +GL+ L+G   G I  A    +   A +    + ++F    Y+
Sbjct: 110  YRGRAELDASWLEGELADGLLALSGAQQGDIGLALAAGNEAAARRHAQRWAQVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LP F   +   
Sbjct: 230  RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GLE RLAQ    +         Y QRLDFE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSQEGLEKRLAQLYPDEAEREAQRDKYNQRLDFECGTIKKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++   +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLPPDINQSHYRFEPVAQAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ A
Sbjct: 826  GKPSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GALD    +R QLL S+    + A+    N       +F    G  + +  L      + 
Sbjct: 886  GALDSLHANRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + + 
Sbjct: 943  KRRLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022


>gi|83720422|ref|YP_441538.1| DNA polymerase III subunit alpha [Burkholderia thailandensis E264]
 gi|83654247|gb|ABC38310.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia thailandensis
            E264]
          Length = 1278

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1046 (39%), Positives = 607/1046 (58%), Gaps = 38/1046 (3%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
              +   P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A
Sbjct: 103  APMSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEA 161

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              AGI+PI GC + I  +D+                ++LLV    GY  L EL+S+ +L 
Sbjct: 162  RDAGIKPIAGCDVWITNRDDRDKP----------SRLLLLVKNKRGYLNLCELLSKAWLT 211

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +Q +    +  SWL+    +GL+ L+G   G I  A    +   A +    + ++F    
Sbjct: 212  NQYRGRAELDASWLEGELADGLLALSGAQQGDIGLALAAGNEAAARRHAQRWAQVFPGGF 271

Query: 183  YVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ LQR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++
Sbjct: 272  YLELQRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILA 331

Query: 242  QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               R  R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LP F   + 
Sbjct: 332  NPRRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDG 391

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYF 357
              +    ++ L   +  GLE RLAQ    +         Y QRLDFE   I +M F GYF
Sbjct: 392  MSL----DDYLVQLSQEGLEKRLAQLYPDEAEREAQRDKYNQRLDFECGTIKKMGFPGYF 447

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPD
Sbjct: 448  LIVADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPD 507

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + K
Sbjct: 508  FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAK 567

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP  P   V++   + ++   +E    +  V +LL+++Q++EGL R+   HA G++I  
Sbjct: 568  LIPFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAP 627

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593
              L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +     
Sbjct: 628  GKLTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 687

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPG
Sbjct: 688  ENWSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPG 747

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+L
Sbjct: 748  PMDLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 807

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++
Sbjct: 808  RRAMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLA 867

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            Y TAW+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+    
Sbjct: 868  YYTAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLPPDINQSHYRFEPVAQ 927

Query: 834  R-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                    I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+
Sbjct: 928  ADGKPSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALI 987

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AGALD    +R QLL S+    + A+    N       +F    G  + +  L      
Sbjct: 988  RAGALDSLHANRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAW 1044

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            +   R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + 
Sbjct: 1045 DDKRRLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRT 1101

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + T++G  +      +   + E   F
Sbjct: 1102 QMTQRGK-MVIALLDDGTGQCEVTVF 1126


>gi|326333480|ref|ZP_08199722.1| DNA polymerase III, alpha subunit [Nocardioidaceae bacterium Broad-1]
 gi|325948725|gb|EGD40823.1| DNA polymerase III, alpha subunit [Nocardioidaceae bacterium Broad-1]
          Length = 1194

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1073 (33%), Positives = 550/1073 (51%), Gaps = 53/1073 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
               SFVHL VH+ YS+L+GA  L+ +  + +  + PAIA+TD  N+  A +F +KA A  
Sbjct: 5    SKDSFVHLHVHTEYSMLDGASLLDGLFKRTSELEMPAIAMTDHGNMHGAYDFWKKAKAHD 64

Query: 67   IQPIIGCQLDIDM--------------QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            ++PIIG +  I                 D  +      +       + +     EG   L
Sbjct: 65   VKPIIGIEAYITPNTPRSERKRVRWGKGDAAQEGGDDVSGGGAYTHMTMWAENTEGMHNL 124

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
              L SR  L +      R+    L E  ++G+I+ TG  SG I         + A K   
Sbjct: 125  FRLSSRSSL-EGYYFKPRMDKEILAE-HSKGIIVSTGCPSGAIQTRLRLGQWEEALKEAG 182

Query: 173  TFKKLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              + +FG D +++ L  H    ++     +++L  T  +  VATN+S + + ED  AH+ 
Sbjct: 183  ELQDIFGKDNVFLELMDHGISIEKRVRDDLLKLGKTMGIRPVATNDSHYNNPEDAGAHEA 242

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            L+ V   + +++    +       +     +   +++ E       I    + +L     
Sbjct: 243  LLCVQSGSRMTEPPYSKGGKRFAFEGSGYYIKSAAEMRELWGRQDLIDACDNTLLIAERC 302

Query: 291  ILP------RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
             +        ++ +      + EE+ LR +   G+E+R            Q+ + R++FE
Sbjct: 303  DVEFTESTGGYMARADIPEGETEESWLRKETWRGIELRYPG-----EKLTQEVKDRVEFE 357

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            ++VI +  + GYFL+VADFIQW+K N I +GPGRGSGAGS+ AYAL ITD+DPL   L F
Sbjct: 358  IDVILQKGYPGYFLVVADFIQWSKNNGIRIGPGRGSGAGSIVAYALKITDLDPLEHGLFF 417

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R SMPDFDIDF   RR E I+YV  KYG E+VAQI TFG ++AK A++D  R 
Sbjct: 418  ERFLNPERPSMPDFDIDFDDHRRGETIKYVTEKYGAEKVAQIATFGRIKAKQAIKDAARI 477

Query: 465  LQMPYSQVDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEIS 515
            L   ++  DR+ K +P D     V          +   +   FR     DP V ++ E +
Sbjct: 478  LDHGFAIGDRITKALPPDVMGKGVPLKELFNPDHKRYGEGGDFRALHDTDPDVRKIYETA 537

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
              LEG  R    HAAG+++   P+  +VP+    +    VTQF     E  GL+K DFLG
Sbjct: 538  LGLEGQIRQTGIHAAGVIMASEPIIDIVPLMEPKQDGQVVTQFEYPTCEALGLVKMDFLG 597

Query: 576  LKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L  L  L+ +LD +   R + + L  +PFDD  TY L+    TLG+FQL+  GMR  L  
Sbjct: 598  LSNLHTLEDALDNIRANRDIDLVLEEVPFDDKPTYELMQRGDTLGVFQLDGGGMRALLRS 657

Query: 635  MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGV 688
            M PD   DI A+ +LYRPGP+  D+   Y +RKNG+E IV IHP ++  L     ET G+
Sbjct: 658  MLPDRFADITAVSALYRPGPMGADSHNKYAHRKNGREPIVPIHPELEEPLAEVLGETYGL 717

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQVM IAQ+L+G+SL +AD LRRAMGKK K E+DKQ   F +G  + G S++    
Sbjct: 718  IVYQEQVMSIAQVLAGFSLGQADNLRRAMGKKKKAELDKQYAGFQAGMLERGYSQSAIDT 777

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            I+E+L  F+DY FNKSH+AAY V++Y TA++K +YP E++AA +T   ++ +K+  +  +
Sbjct: 778  IWEILLPFSDYAFNKSHSAAYGVVTYWTAYLKANYPTEYMAALLTSVKNDKDKMAIYLNE 837

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLED 867
             R+  I ++PP VN    DF      I + L A++ VG      I+EA  +   F+   D
Sbjct: 838  CRRMKIAVLPPDVNESSHDFTAVGTDIRFGLTAVRNVGAQVVDGIVEARTSKGRFEDFND 897

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F ++V  +  N+RV+ESL+ AGA D   + R  L+   +        +++N     +++F
Sbjct: 898  FLAKVPDRVCNKRVIESLIKAGAFDDMKHLRRSLVAIHETAVDQYVDIKRNEAIGQDSLF 957

Query: 928  AHEKGTFSDK----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                     +    + + +    +      +E+ +LG Y S HPL   + +L        
Sbjct: 958  GGLDDGDGVEFGVSVAIPEMDEWDKMTLLGHEREMLGLYVSDHPLMGLEHVLANGTDCTI 1017

Query: 984  EESV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + +   +    + + ++ +V +  ++ T+KG     VT  +     E   FP
Sbjct: 1018 GQLMTDESRPHNSTVTVSGLVTNVNRRITKKGDAWATVTLEDLEGSVEVLLFP 1070


>gi|307257156|ref|ZP_07538928.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 10 str. D13039]
 gi|306864318|gb|EFM96229.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 10 str. D13039]
          Length = 1158

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1048 (38%), Positives = 604/1048 (57%), Gaps = 39/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  +A  
Sbjct: 1    MTQQ-RFVHLKVHSDFSMINGLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +  + + +              + LL     GY  +  L+S+ Y    
Sbjct: 60   SGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAYQQGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              +   +  +WL E+  EG+I+L+G  +G + +A    +   A++ +  +++ F +  Y+
Sbjct: 110  V-EFPLVEKAWLAEL-NEGIIVLSGERNGDVGKALLKENEAEADELVGFYQQYFPNHYYL 167

Query: 185  NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R  R  +     Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  +   
Sbjct: 168  ALCRTSRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDP 227

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP + +P  Y ++  EM ++F+DLP+A+ENTV+IA RC+  +++       +       
Sbjct: 228  KRPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGE-----YFLPNFPT 282

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLI
Sbjct: 283  GDLSTEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLI 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 343  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 402

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+ KLI
Sbjct: 403  VDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLI 462

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 463  PPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAI 521

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR       
Sbjct: 522  TDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKE 581

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP
Sbjct: 582  PVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGP 641

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +++ +V       + N +         H  + P+L  T GVI+YQEQVMQIAQ+L+GY+L
Sbjct: 642  LESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTL 701

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 702  GGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+    
Sbjct: 762  AYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSGKHR 821

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR  E L
Sbjct: 822  FSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGL 881

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+++L++  K +    K       ++F     T  + +       
Sbjct: 882  IMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTP 941

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +     E E+  LG Y SGHP+  +   L         E   T RG  + +A +++  
Sbjct: 942  KWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGS 1001

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++GSR+G  T  + + + +   F
Sbjct: 1002 RIAVTKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|212710382|ref|ZP_03318510.1| hypothetical protein PROVALCAL_01442 [Providencia alcalifaciens DSM
            30120]
 gi|212686964|gb|EEB46492.1| hypothetical protein PROVALCAL_01442 [Providencia alcalifaciens DSM
            30120]
          Length = 1144

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1032 (39%), Positives = 597/1032 (57%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K+AA   PA AITD  NL   ++F   A  AGI+PIIG    ++   
Sbjct: 1    MIDGLAKTGPLVKKVAAMGMPAFAITDFTNLCGLVKFYGAAHGAGIKPIIGADFYME--- 57

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                    +     V  + +L    EGYQ L  L+S  Y    G     I   WL +   
Sbjct: 58   -------SEQLGDEVAHLTVLARNNEGYQNLTLLISEAYQKGYGAIGPTIHRDWLVK-HK 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + +     +  + ++ L  ++  F D  Y+ L R    D        
Sbjct: 110  EGLILLSGGRKGDVGQFLLRGNQALVDESLEFYQTYFPDAYYLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+LA    LP+VATN+  F+   D++AH++ +A+     ++   RP+  +P  YL+   E
Sbjct: 170  VELATQRGLPVVATNDVCFIESSDFDAHEIRVAIHDGYTLADPKRPKNYSPQQYLRTEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEALEN+VEIA+RC+  +++           +      E E+ L  +A  GL
Sbjct: 230  MCELFSDIPEALENSVEIAKRCNVTIRLGEYF-----LPKFPTGDMETEDFLVMRAKEGL 284

Query: 320  E---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E     L      +     +Y +RL+ ELNVI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLKFLFPDEKVRAEKRPEYDERLEIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL   LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V  
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLELDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAQ 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-KAFEVEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D   + PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL-----IPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K +L       IP DD +++ +
Sbjct: 524  QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKNLDPIDIAAIPLDDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVNWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  G+ KNG+   +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGSIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V D   I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  + D C+RVD KK+NRRV+E L+ AGA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARQQGGIFKEIFDLCARVDIKKINRRVMEKLIMAGAFDHLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL++  K A    K       ++F    +     + +          V  + E+  LG 
Sbjct: 884  SSLEDALKAADQHAKAEAIGQGDMFGVLAEAPEQVESSYASVPKWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP+  Y   + +       ++   T RG    +  +V+S +   T++G+RIG  T 
Sbjct: 944  YLTGHPITRYLSEIERYTNGLRLKDVNPTPRGQVTTVVGLVLSAKVITTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   +   F
Sbjct: 1004 DDRSGRLDIMLF 1015


>gi|163846593|ref|YP_001634637.1| DNA polymerase III subunit alpha [Chloroflexus aurantiacus J-10-fl]
 gi|222524387|ref|YP_002568858.1| DNA polymerase III subunit alpha [Chloroflexus sp. Y-400-fl]
 gi|163667882|gb|ABY34248.1| DNA polymerase III, alpha subunit [Chloroflexus aurantiacus J-10-fl]
 gi|222448266|gb|ACM52532.1| DNA polymerase III, alpha subunit [Chloroflexus sp. Y-400-fl]
          Length = 1248

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/1055 (32%), Positives = 525/1055 (49%), Gaps = 46/1055 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS YSLL+G  +   I  + A     +IA+TD   ++ A+EF + A  AGI+P
Sbjct: 3    DFVHLHVHSEYSLLDGYATTKGITQRAAELGMDSIALTDHGVMYGAMEFYEAAKKAGIRP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG +  +          +G         ++LL     GY+ L++L +R +L   GK   
Sbjct: 63   IIGVEAYMAPGSLSDPMTKGAK---NYFHLLLLAQNEVGYRNLVKLTTRAHLDGMGKGVF 119

Query: 128  -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
               RI    L E   EGLI+ +   +G +         + A +    ++ L G DR Y+ 
Sbjct: 120  ARPRIDRQLL-EAHHEGLIVTSACLAGEVLHYLKAGDRRAAVETAAYYRDLLGPDRYYLE 178

Query: 186  LQRHR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            LQ H           ++V++     +PLVAT+++ F+  ED      +MA+  +   ++ 
Sbjct: 179  LQLHDNTPELEPLNDELVKIGRELGIPLVATSDAHFVRPEDKATQHKIMAMGMNMTYAEF 238

Query: 244  DRPRVTPDHYLKN---RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                   D                    E LENT  IA  C   L+     LP F     
Sbjct: 239  CAREYAMDESYHILSGEQMWERFKRYGTEPLENTRRIADMCRLKLEFGRVQLPVFELPPG 298

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D      + LR     GL  R        G    +Y  RL +EL+VI +  F  Y LIV
Sbjct: 299  HD----AASYLRLVCEEGLMRRF------NGQPPAEYMNRLAYELDVINQTGFPDYMLIV 348

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D++++A+   IP  P RGS   S+  YAL ITD+DP++  LLFERFL+P+R+ MPD D 
Sbjct: 349  WDYVKFARSRGIPCLP-RGSAGASLVLYALGITDVDPVKNKLLFERFLSPERLEMPDIDT 407

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR E++ Y+ +KYG E VAQIIT+G+L AKAA+RD+GR L +   +VDR+ KLIP
Sbjct: 408  DFADSRRQEILDYIADKYGRENVAQIITYGTLGAKAAIRDMGRVLGLDPGEVDRVAKLIP 467

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              P      QA+      ++     P +  L++ +QK+EG  R   THA G+V+   PL+
Sbjct: 468  ALPVGTTIAQALERVPELKQIYETQPHLRELIDEAQKVEGRMRSVGTHACGVVVSRTPLA 527

Query: 541  QLVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
            +LVP+ R  + +   +  F    + K GL+K D LGL  L+++ ++L ++ Q    ++ L
Sbjct: 528  ELVPLQRTTKDENALMAAFEGPTLAKMGLLKMDILGLTNLSVVAEALKYIEQTTGRRMWL 587

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD + +  L    T  +FQLES+GM + L  ++P  +ED+ A+V+LYRPGP++ I
Sbjct: 588  DEIPLDDPKVFEALGRGETKNVFQLESAGMTRYLMQLKPTRVEDLYAMVALYRPGPLEQI 647

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             VY   KN   +I  +HP+++P+L +T GVI+YQEQ+MQ+ Q ++ Y+L +A ++ +A+ 
Sbjct: 648  PVYIQNKNNPSQIRYLHPVLEPILSDTYGVIVYQEQIMQLLQTVADYTLGQAYIVIKAIS 707

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK +E M + +  F  G  + GISK IA  ++EL+  FA Y FN+ HA  Y ++SYQTAW
Sbjct: 708  KKNRELMAENEAIFKQGCQRKGISKEIADQLWELILPFAGYSFNRPHATLYGLLSYQTAW 767

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831
            +K +YPVE++ A +T     +E + K   +AR+  + ++PP VN     F +        
Sbjct: 768  LKVNYPVEYMTAVLTGAGGVIEDVTKAALEARRLGVAVLPPDVNRSHKGFTIEPLAQPLP 827

Query: 832  -----DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                    I + L AIK VG      I+ A  A  PF SLED C+RVD   LN+R LESL
Sbjct: 828  PGVTHQRGIRFGLMAIKNVGEGPVEAIIAAREAGGPFQSLEDLCARVDRHALNKRTLESL 887

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS- 944
            + AGALD    +R Q L  LD         +K R     ++F       +    + +   
Sbjct: 888  IKAGALDSLPGTRRQKLAILDQAVSAGIEAQKAREIGQSSLFDIFGEATTANPVVARIPL 947

Query: 945  ------VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
                    +       E+ +LG   S  P+      +   G        A   G  +   
Sbjct: 948  PLIVESPADQKEVLLWEKELLGLNISDDPIAKALEGVDLSGATELGSIDAEHIGETLTFV 1007

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++   ++  T+KG  +      +     E   FP
Sbjct: 1008 GVLSGVRRIATKKGETMLVANLEDLTGSIEIVVFP 1042


>gi|296447359|ref|ZP_06889286.1| DNA polymerase III, alpha subunit [Methylosinus trichosporium OB3b]
 gi|296255138|gb|EFH02238.1| DNA polymerase III, alpha subunit [Methylosinus trichosporium OB3b]
          Length = 1150

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 512/1040 (49%), Positives = 684/1040 (65%), Gaps = 21/1040 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL VH+++SL EGAL+++ ++     D+ PA+AITD+NNLF ALEFS+KA  
Sbjct: 1    MSAGVGFVHLHVHTAFSLREGALTISRLIGLAEKDEMPALAITDSNNLFGALEFSEKAAK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI   QL +D  D  +              IVL+  +  GY  LI L +  +L  +
Sbjct: 61   AGLQPIPAIQLTVDFGDGTQSLTADGRGN-----IVLIAKSEAGYANLIRLATCAWLGPE 115

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              ++  + +  L    +E LI LTGG  G +D        + A  RL   + LF  RLYV
Sbjct: 116  LGETPHVTMEQLSASSSE-LIALTGGPEGGLDTLLARGRPEQARARLEALEPLFDGRLYV 174

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   ++R  E Q++ LA+   LPLVA N   F + ED+EAHD L+ +A  TV    
Sbjct: 175  ELQRHGLDHERRVEPQLLDLAFRRGLPLVAANEPFFAAAEDHEAHDALLCIADGTVTGVA 234

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI---EKEC 300
            +R R++P HY K R EM+++F+DLPEA  +TVEIARR +       PI+PRF+   E   
Sbjct: 235  ERRRLSPQHYFKTRKEMLALFADLPEATASTVEIARRVAVRATKRKPIMPRFMRDGEGGG 294

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            + ++  E  ELR +A  GLE RLA    A G   + Y  RL FEL+ I +M+F GYFLIV
Sbjct: 295  EALEVIETRELRRQAQEGLEARLATHPPAPGQTRETYEARLAFELDTIEKMRFPGYFLIV 354

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI++AK   IPVGPGRGSGAGS+ AYALTITD+DPLRF L FERFLNP+RMSMPDFDI
Sbjct: 355  SDFIKYAKSKGIPVGPGRGSGAGSLVAYALTITDLDPLRFGLFFERFLNPERMSMPDFDI 414

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ RR+EVI YV+++YG +RVAQIITFGS  A+  LR VGR L+MP  QVD+L KL+P
Sbjct: 415  DFCQSRREEVIEYVRDRYGADRVAQIITFGSFLARGVLRSVGRVLEMPLGQVDKLAKLVP 474

Query: 481  NDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +PA PVS  +A+A + + REA   D  V RL +I+  LEGLY +ASTHAAG+VI DRPL
Sbjct: 475  QNPAKPVSLAEAVAGELKLREAIAEDGKVARLFKIAGSLEGLYSNASTHAAGVVIADRPL 534

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
              LVP+YRD +SD+P TQFNMKW ++AGLIKFDFLGLKTLT+L  ++D + +R    DL+
Sbjct: 535  DTLVPLYRDPKSDMPATQFNMKWADEAGLIKFDFLGLKTLTVLATAVDLVRRRVADFDLA 594

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP +D +TY +L    T+G+FQLES+GMR+AL  M+ D  EDIIALV+LYRPGP+ NI 
Sbjct: 595  AIPLEDPQTYEMLGRGETVGVFQLESAGMRKALVDMRADHFEDIIALVALYRPGPMANIP 654

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             Y   K G E+   IHP I+ +LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGK
Sbjct: 655  TYCAVKLGDEEADYIHPKIEHILKETFGVIIYQEQVMQIAQVLSGYSLGEADLLRRAMGK 714

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KIK EMD Q+ERF+SGA + G+    A  IF+LLAKFADYGFNKSHAAAYA+I++QTAW 
Sbjct: 715  KIKAEMDAQRERFVSGAVERGLEPAKASEIFDLLAKFADYGFNKSHAAAYALIAFQTAWF 774

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----R 834
            K HYPVEFLAASMTL+  N +K+ +F  +AR+  I + PPS+    VDF V         
Sbjct: 775  KAHYPVEFLAASMTLDKGNTDKLAEFRNEARRLGIAVEPPSIRRSGVDFDVAPGADGALA 834

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I Y+L+A+KGVG   A  I+ +  D+PF  L DF  R++ +++N++VLE+L   GA D  
Sbjct: 835  IRYALSAVKGVGEGQAASIVRSRGDEPFRGLGDFARRINPREVNKKVLENLACCGAFDEM 894

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
               R +++ +++ I   A    ++R      +F    G  S+++ L K     +S + + 
Sbjct: 895  ESDRARVVGAIETILAAANRTAEDRQLGQNALFG---GGPSEELALPKAEPWTASEKLKR 951

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKG 1012
            E    GF+ +GHPLD +  +L K  +  + E  A ++      RLAA+V+ + +++T+ G
Sbjct: 952  EFDAAGFFLTGHPLDSFAGVLAKRRLTRWAEFTAAVKRGATAARLAAVVLDRAERRTKSG 1011

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            S++G V  S+ + +YEA  F
Sbjct: 1012 SKMGIVQLSDDSGQYEAILF 1031


>gi|291285989|ref|YP_003502805.1| DNA polymerase III, alpha subunit [Denitrovibrio acetiphilus DSM
            12809]
 gi|290883149|gb|ADD66849.1| DNA polymerase III, alpha subunit [Denitrovibrio acetiphilus DSM
            12809]
          Length = 1179

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/1048 (37%), Positives = 603/1048 (57%), Gaps = 33/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQ-PAIAITDTNNLFSALEFSQKAC 63
            +  S  FVHL +H+ YSLL+GA+ + +++ KI      P + I+D   +   ++F ++A 
Sbjct: 1    MNNSKDFVHLHLHTQYSLLDGAILVGDLMQKIKEKGMTPMVGISDHGTMHGIVDFYRQAR 60

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            A  I+PI+GC++ +        T +          +VL     +G   L +LVS     +
Sbjct: 61   ANDIKPILGCEVYVAPDSRFNTTYE--RGQERNHHLVLQAVNNKGLSNLQKLVSLAQF-E 117

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182
                  R+    + +  +EGLI ++   +G I R    +    A      ++ +FG D  
Sbjct: 118  GFHYKPRVDKEIMAQY-SEGLIAMSACLAGEIPRKIIRDQYDEAVAAAHEYRDIFGKDNF 176

Query: 183  YVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++ +Q +   ++      +++++    +PLVATN+  +L++ D+ +H+VL+ +   + ++
Sbjct: 177  FLEIQENGIEEQLMVNRNIIKMSRDSGIPLVATNDCHYLNKGDHLSHEVLICIQTQSTIN 236

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              +R    +   ++K   EM + F ++P+AL NTVEIA RC+  +      LP +   E 
Sbjct: 237  SPNRFEIHSDQLWVKTPEEMWAAFGEVPDALTNTVEIANRCNTSITFGELHLPEYEVPEG 296

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              I     + L + A  GL  +LA+         Q Y  R+  E +VI    F+GYFLIV
Sbjct: 297  YTIS----SYLEHLARKGLHEKLAKIP---SEKHQIYYDRMQKEFDVIIGKNFAGYFLIV 349

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DF+ +++   IPVGPGRGSGAGS+ AY+L ITD+DP+ F+LLFERFLNP+R SMPDFDI
Sbjct: 350  WDFMNYSRSVGIPVGPGRGSGAGSLVAYSLGITDLDPIYFNLLFERFLNPERSSMPDFDI 409

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC   R++VI+YV+ KYG +RV+QIITFG L  ++ +RDVGR L++P   VD+L K IP
Sbjct: 410  DFCVKGREQVIKYVREKYGDDRVSQIITFGKLLGRSTVRDVGRVLEVPLPIVDKLAKAIP 469

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +DP   +  +A+  D   R+   A    + +L  + KLEGL R+   HAAGIVI D+PL+
Sbjct: 470  SDPGMTL-RKALKKDEDLRKVFQAAEQGELILNHAVKLEGLVRNTGMHAAGIVISDKPLN 528

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLS 599
            + VP+    +++  + QF    +E  GL+KFDFLGL  LT++ +++      RG  +D++
Sbjct: 529  EYVPL-CRGQNNEVIAQFEKDTLESVGLVKFDFLGLNNLTIIDEAIKQIKKNRGEDLDIA 587

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP D+ + Y LL+   T  +FQLESSGM+  L+ ++P+  EDIIALV+LYRPGP+++ +
Sbjct: 588  SIPLDNKKVYELLSRGDTTAVFQLESSGMKNLLKKLRPEQFEDIIALVALYRPGPMESGM 647

Query: 660  V--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            +  +  RK G+E+I  I P ++ +LKET+GV+IYQEQVMQIAQ++ GYSL  AD LRRAM
Sbjct: 648  LDSFVKRKYGEEEIDYIFPDLEEILKETRGVVIYQEQVMQIAQIIGGYSLGSADNLRRAM 707

Query: 718  GKKIKEEMDKQKERF-------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            GKK   EM+KQK+ F       I GA   G    +A ++F+ LAKFA YGFNKSH+AAYA
Sbjct: 708  GKKKAAEMEKQKQFFLYGDGDTIPGAKARGYDMKMAEDLFDKLAKFAGYGFNKSHSAAYA 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +ISYQTA++K  YPVE++AA ++ E+D  +KI  F ++ +   I ++PP++N   V+F++
Sbjct: 768  LISYQTAYLKALYPVEYMAAILSCEIDKGDKIVTFTEECKNMGIDVLPPNINKSGVNFEI 827

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                I++ L AIK VG       ++    +  F ++ DFC RVD +  N+RVLESLV AG
Sbjct: 828  EGTAIHFGLGAIKNVGFNAIEAALQERDKNGEFKNIYDFCERVDLRACNKRVLESLVKAG 887

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVE 946
            A DC G +R Q LQ ++   +  Q   K       +I A    E+    ++         
Sbjct: 888  AFDCSGKNRRQNLQVIERALEEGQRKHKMAEQGIMSIEAFLVDEESDEEEQFFFPDVEEM 947

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
              +   + E+ VL FY S HPL +Y  IL+   I    E        +I +  +V   ++
Sbjct: 948  PENELLKMEKEVLDFYISNHPLAIYNNILKTFTI-PIGEVANPDSEGDIVIGGLVKHVKR 1006

Query: 1007 KKT-RKGSRIGWVTFSEPAKEYEANFFP 1033
              T +KG ++ +    +   E E   FP
Sbjct: 1007 IVTKKKGEKMAFANVEDMDSEVEVVVFP 1034


>gi|257066179|ref|YP_003152435.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548]
 gi|256798059|gb|ACV28714.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548]
          Length = 1148

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1050 (34%), Positives = 584/1050 (55%), Gaps = 46/1050 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G   ++ +LD+       ++AITD   ++  +EF ++A   GI+PI
Sbjct: 5    FTHLHVHTEYSLLDGFSRIDLLLDRAKELGMDSLAITDHGQMYGVIEFYKQAKKRGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +   D+       +        ++LL    +GY+ LI++VS  Y ++      R
Sbjct: 65   IGCEVYVSENDHTIKEASNR----RYYHLILLAKNMDGYKNLIKIVSEAY-VNGFYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +   ++++  +E +I L+   +G + +    N  + A++    +++ FG    Y+ LQ H
Sbjct: 120  VSFDFIKKY-SEDIIALSACLNGEVSQRLIENDYESAKETAQRYEEAFGKGNFYLELQNH 178

Query: 190  RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++   ++ + ++    ++PLVATN+  ++++ED    DVL+ +    +V  +DR ++
Sbjct: 179  GIKEQNIVNRGLARIHEEEDIPLVATNDIHYINKEDAYYQDVLLCIQTGKLVKDEDRMKM 238

Query: 249  T-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + YLK+ +EM  +F     A+ENT +IA +C+     H P LP F +    +    +
Sbjct: 239  PASEFYLKSYNEMKELFGAYQGAIENTQKIADQCNVEFTFHEPHLPYFTK---VEEGLTD 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+     GL           G  ++  R R D E+ VIA M +  YFLIV DF+++A
Sbjct: 296  LEYLKKLVDQGLIK-------KYGSISEKIRSRADKEIKVIADMGYVDYFLIVWDFVRYA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++N+I VGPGRGS AGS+ +YAL IT IDPL++ L+FERFLNP+R+SMPD DIDF    R
Sbjct: 349  RENDIAVGPGRGSAAGSIVSYALDITQIDPLKYKLIFERFLNPERVSMPDIDIDFDYVLR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D+V+ YV   YG + V+QI+TFG +QA+ A+RDVGR L + Y++VD++ KLIP      +
Sbjct: 409  DKVVEYVNELYGRDHVSQIVTFGRMQARNAVRDVGRVLDISYAKVDKIAKLIPQAIGMTI 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A    S+F+E   +D    RL++ ++K+EGL RH S HAAG+VI    L+ ++P+  
Sbjct: 469  D-KAFDSSSKFKEIYESDVEAKRLIDTARKVEGLPRHTSIHAAGVVISKEVLTDIIPLAL 527

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
               +DL VTQ++M  IE+ GL+K DFLGL+ LT+++ ++  + + RG+ VDLS I  +D 
Sbjct: 528  S--NDLVVTQYDMTEIEELGLLKMDFLGLRNLTVIKNTIKDVKKNRGIDVDLSKIDVNDK 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
                      T+GIFQ ES+GMR  L+ ++P   +D+IA  SL+RPGP+D I  Y + KN
Sbjct: 586  NVIDQFNNAKTIGIFQFESAGMRNFLKNLKPTVFDDLIAANSLFRPGPMDEIPKYIHNKN 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
                +  I P + P+L  T G+I+YQEQVMQI Q L+GYSL EAD LRRAM KK    M+
Sbjct: 646  NPADVTFIDPALKPILDVTYGIIVYQEQVMQIVQKLAGYSLGEADNLRRAMSKKKMAVME 705

Query: 727  KQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            + +  F            I G  +NG+ ++ A  I++ +  FA Y FNKSH+AAY++++ 
Sbjct: 706  ENRGIFIKGKTDSSGNVVIPGCIRNGVDESSANQIYDEMISFAKYAFNKSHSAAYSLVAI 765

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YP E++A  ++  MD   K+  +  + +   I+++PP VN    +F V + +
Sbjct: 766  QTAYLKYYYPEEYMANLISSVMDQSSKLYLYVNETKALGIEVLPPDVNKSFAEFSVEEGK 825

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGA 890
            I + L+ IK VG+     I++A   D  F + +DF  RV   DS+ LN++ +ESL+ AGA
Sbjct: 826  IIFGLSGIKNVGSNLIDSIVKARKKDGKFTNFKDFLQRVDEIDSRSLNKKGIESLIKAGA 885

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D   Y+R  L+   +          K       N+         + + +++ +      
Sbjct: 886  FDSLKYTRSSLMAIYEKAISAVSDNRKINVKGQLNLLDDLADKPKEDVRIQEINEFPKKT 945

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMG--IKGYEESVA-----TIRGNNIRLAAMVVS 1003
            + + E+ VLGFY S HPL      L         Y++ +       +    + +A ++ +
Sbjct: 946  KLKLEKEVLGFYISDHPLSDLGDRLGDFVNFTTDYKDHIDDTRIHLLDNKFVSMAGVITN 1005

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K +  T+K   + + T  +     E   FP
Sbjct: 1006 KSEIMTKKRQLMCFATLEDMQGSIEIVIFP 1035


>gi|33865566|ref|NP_897125.1| DNA polymerase III subunit alpha [Synechococcus sp. WH 8102]
 gi|33632735|emb|CAE07547.1| DNA polymerase III, alpha subunit [Synechococcus sp. WH 8102]
          Length = 1172

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1049 (35%), Positives = 580/1049 (55%), Gaps = 33/1049 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  L  ++++      PAIA+TD   ++ A+E  +    + ++P
Sbjct: 2    AFVPLHNHSDYSLLDGASQLPAMVERAKELGMPAIALTDHGVMYGAIELLKLCKGSDLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          +          +V+L   A GY+ L++L S  +L     +  
Sbjct: 62   IIGNEMYVINGSIDDPQPK----KEKRYHLVVLAKNAVGYRNLVKLTSISHLRGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L+   +EGLI+ T    G + +A       VA      ++++FG+  Y+ 
Sbjct: 118  FSRACIDKHLLKTY-SEGLIISTACLGGELPQAILRGRPDVARNVARWYQEVFGEDFYLE 176

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V++A    + LVATN++ +LS++D EAHD L+ V    ++S + 
Sbjct: 177  IQDHGSPEDRIVNVELVRIAQELGIQLVATNDAHYLSKQDVEAHDALLCVLTGKLISDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R R T   Y+K   EM  +F D   P+ +   +      +  ++ +  +    + +    
Sbjct: 237  RLRYTGTEYIKTEEEMNRLFVDHLEPDVVRQAIANTVAVAEKVEDYDILGHYQMPRFPIP 296

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                    LR     GL  RL     +     ++Y +R+  EL ++ +M F  YFL+V D
Sbjct: 297  EGHTAVTYLREVTEQGLRERLE--LSSDASIPENYAERMAHELKIMEQMGFPTYFLVVWD 354

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I++A++  IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 355  YIRFAREQKIPVGPGRGSAAGSLVAYALGITNIDPVTNGLLFERFLNPERKSMPDIDTDF 414

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KLIP  
Sbjct: 415  CIERRSEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 474

Query: 483  PAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
               P  L+A+  +      FRE   +DP V R ++++ ++EG  +    HAAG+VI   P
Sbjct: 475  RGKPAKLKAMIGEESPTPEFREKYESDPVVKRWVDMAMRIEGTNKTFGVHAAGVVIAADP 534

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597
            L +LVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++ K+L+ +    G ++D
Sbjct: 535  LDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEVSSGTRLD 593

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               +P +D +T+ LL      GIFQLESSGMRQ +  ++P  +EDI ++++LYRPGP+D 
Sbjct: 594  PDKLPPEDADTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPGPLDA 653

Query: 658  --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  + NRK+G+E I   H +++P+L ET G+++YQEQ+M+IAQ L+GYSL +AD+LRR
Sbjct: 654  GLIPKFINRKHGREAIDFAHTILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQADLLRR 713

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK   EM K +  F+ GA++ G+ + ++  +F+ +  FA+Y FNKSH+ AY  ++YQ
Sbjct: 714  AMGKKKVAEMQKHRGIFVKGAAERGVDEAVSDELFDQMVLFAEYCFNKSHSTAYGAVTYQ 773

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYPV ++AA +T+     +K++++  +     I++MPP VN    DF    +RI
Sbjct: 774  TAYLKAHYPVAYMAALLTVNAGAADKVQRYIANCNAMGIEVMPPDVNASRTDFTPNGDRI 833

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L+A++ +G    R ++ +  +D PF SL D C R+ S  LNRR LESL+  GALD  
Sbjct: 834  LFGLSAVRNLGDGAIRQLIRSRDSDGPFRSLPDLCDRIPSSVLNRRGLESLIHCGALDSM 893

Query: 895  GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--------ITLEKFS 944
                +R QL+  LD +  +A    K+R +   N+F        +               +
Sbjct: 894  DPAANRAQLMADLDLLLDWASSRAKDRDSGQGNLFDLMAAPNDEDGASDLSLAPKAAPVA 953

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                + + + E+ +LGFY S HPL    P  R +   G            +    M+   
Sbjct: 954  DYGPAEKLKLEKELLGFYLSDHPLKQLTPSARLLAPIGLGALEEQPDKAKVSAVTMITEL 1013

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +Q  TRKG  +  +   + +   EA  FP
Sbjct: 1014 RQVTTRKGDGMAILQLEDLSGSCEAVVFP 1042


>gi|256827611|ref|YP_003151570.1| DNA-directed DNA polymerase III PolC [Cryptobacterium curtum DSM
            15641]
 gi|256583754|gb|ACU94888.1| DNA-directed DNA polymerase III PolC [Cryptobacterium curtum DSM
            15641]
          Length = 1165

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/1052 (32%), Positives = 539/1052 (51%), Gaps = 42/1052 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA----CAA 65
            +FVHL  H+ YSLL+GA  + +++ + A    PA+AITD   +    E            
Sbjct: 2    AFVHLHNHTEYSLLDGATHVKDMVQRAADLGMPAVAITDHGVMSGVPELEDACISVEKET 61

Query: 66   GIQ--PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            GI+  PI GC++     D LK     +   P +  ++LL  T EGY  L++LVS  + +D
Sbjct: 62   GIKVKPIFGCEIYFTTDDELK-----REGKPRLYHMILLAKTNEGYHNLVKLVSESH-VD 115

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRL 182
                  R   + L+   ++GLI  +   +G I R       + A         LF     
Sbjct: 116  NFYYKPRTTFAMLKRY-SKGLIGTSACIAGIIPRLLDLGQYEDAMSWARKLAGLFEPGDF 174

Query: 183  YVNLQRHRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            Y+ LQ                 Q+ Q+A    L  +ATN+  +L+ +D +A D+++ +  
Sbjct: 175  YLELQDQGVVTDLGHTQHELNVQLSQIAKECGLKTIATNDFHYLTHDDAKAQDIILCIGT 234

Query: 237  STVVSQKDRPRVTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
             + V   +R R + D +      EM +  +D PEA +NTVEIA +C+ +L+  + +    
Sbjct: 235  GSQVDDTNRMRFSNDQFYMKTEEEMRAALADFPEACDNTVEIAEKCNVVLERDSILPR-- 292

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAI----AKGYHAQDYRQRLDFELNVIARM 351
                     + E +  R +  +GL  R  +G +           +  +R + E  VI + 
Sbjct: 293  ---FPVPEGETEVSWFRKQCESGLVRRYGEGKVQTFQELAQVRPEVAERYEHEAQVIIKQ 349

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFLIV ++I WAK + I VGPGRGS AGS+  YA+ ITD+DPL + LLFERFL+ +
Sbjct: 350  GFPAYFLIVQEYIMWAKDHGIGVGPGRGSAAGSIVTYAMGITDLDPLPYGLLFERFLSEE 409

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+ MPD D+DF    R +VI +V+  YG + ++ +ITFG LQAK A+RD  R L  PY  
Sbjct: 410  RVEMPDIDVDFDDQHRQDVIDHVREFYGEDHISGVITFGKLQAKNAVRDAARVLGYPYGV 469

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             DRLCKLI N+    +  QA+  +   + A  ++     +++ +Q +EG  R    HA  
Sbjct: 470  GDRLCKLIGNELGITI-QQALETNPDLKAAYESEADAQAVIDAAQSIEGHVRGEGVHACA 528

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             +I   PL+  VP+ RD +    +TQ++  +  + GL+K DFLGL+TL ++ ++ D +  
Sbjct: 529  TIICRDPLADHVPVKRDTKGGGIITQYDGHYTPELGLLKMDFLGLRTLGVISRACDNVKA 588

Query: 592  RG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            R  + +D S I  +D E + L+      G+FQ+E +        M+P    DI+A ++L 
Sbjct: 589  RHGIDIDPSAISLEDPEAFKLMCGGNMDGLFQVEGNLYVTLFARMKPRRFSDIVASIALN 648

Query: 651  RPGPID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+    +  Y +R +GK ++V     + P+L+ET G I+YQEQ+MQI+  +SG+S  
Sbjct: 649  RPGPLQNGFVDDYVDRVSGKSQVVYYDDRLRPILEETYGTIVYQEQLMQISMRMSGFSAG 708

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            +AD LR+AMGKK  E M   +E +  GA  NG S  ++  I+    KFA Y FNKSH+A 
Sbjct: 709  KADKLRKAMGKKKLEVMKALEEDWNQGAVDNGYSLEVSKKIWSDAEKFAQYAFNKSHSAC 768

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YAV+  +TA++K HYP EF+AA ++  + N +K+  +        IQ++PP +N+  V+F
Sbjct: 769  YAVLVMRTAYLKAHYPNEFMAAVLSSYLGNNDKLIHYIASCAASGIQVLPPDINSSNVEF 828

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
               D  + + LA ++GVG      I+       P+ SL DF  R+DS+  NR+ LE+L+ 
Sbjct: 829  TPTDEGVRFGLAGVRGVGEKVVEEIIAERDTHGPYTSLHDFVHRLDSRCYNRKTLEALIK 888

Query: 888  AGALDCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIFAH----EKGTFSDKITLE 941
            AGA D  GY+R QL+  +D   + + A   +K+R     ++F      +   FS++    
Sbjct: 889  AGAFDSTGYTRKQLMYFIDETPLLESAAKRQKDRNCGQTSMFDLFGDSDDSGFSEETPAP 948

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-NNIRLAAM 1000
                 +       E+ +L  Y S HPL  Y  +L K+      +         N     M
Sbjct: 949  DGVEWDKRTLLAFEKDILKIYVSDHPLRPYAGLLSKLSKFRLGDLADREHDIKNATFVGM 1008

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + S   K T+KG+R+   T  +     EA  F
Sbjct: 1009 ISSVVTKLTKKGTRMATFTLEDTTGHVEAVCF 1040


>gi|290473672|ref|YP_003466544.1| DNA polymerase III subunit alpha [Xenorhabdus bovienii SS-2004]
 gi|289172977|emb|CBJ79748.1| DNA polymerase III, alpha subunit [Xenorhabdus bovienii SS-2004]
          Length = 1144

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1032 (39%), Positives = 591/1032 (57%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G     +++ K+A    PA AITD  NL   ++F   A +AGI+PIIG    ++   
Sbjct: 1    MIDGLAKTGSLIKKVAKLDMPAFAITDFTNLCGLVKFYGSAHSAGIKPIIGADFYVE--- 57

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                             + +L    EGYQ L  L+S  Y    G     I   WL +   
Sbjct: 58   -------SDLLGDEYAHLTILARNNEGYQNLTFLISEAYQKGYGAIGPTIKQEWLIKYKA 110

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
             GLI+L+GG  G + +     +  +A++ L  +++ F D  Y+ L R    D        
Sbjct: 111  -GLILLSGGRMGDVGKFLLRGNRAMADQCLDFYQEHFPDSYYLELIRTGRQDEENYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V++A    LP+VATN+  FL  +D+EAH++ +A+     ++   RP+  +P  YL++  E
Sbjct: 170  VEVAAEKNLPVVATNDVCFLESDDFEAHEIRVAIHDGYTMADPKRPKNYSPQQYLRSEQE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEAL+N+VEIA+RC+  +++           +        E+ L  K+  GL
Sbjct: 230  MCELFSDIPEALQNSVEIAKRCNVTIRLGEYF-----LPQFPTGDMSTEDYLVEKSKQGL 284

Query: 320  E---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E     L      +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EDRLNFLYPDPQIRAEKRSEYDERLDIELEVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITDIDPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDIDPLAFDLLFERFLNPERISMPDFDVDFCMEKRDQVIDHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +A A + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-KAFAAEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  QLPEIYEADEEVRVLIDMARKLEGVTRNAGKHAGGVVIAPTKITDFSPIYCDPEGLNPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL-----IPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +LD +  R    +L       IP DD  ++ +
Sbjct: 524  QFDKNDVEYAGLVKFDFLGLRTLTIINWALDMVNARRTHKNLEPIDITAIPLDDQISFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YNNR 664
            L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + +V       +   
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +     +   H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EE
Sbjct: 644  ELSYPDVEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKQPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA   GI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFEEGAISQGINGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V D   I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDESEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA   +  F  L D C+RVD+KKLNRRV+E L+ +GA D  G  R  L+
Sbjct: 824  GVGEGPIEAILEARQKEGHFKELFDLCARVDTKKLNRRVMEKLIMSGAFDRLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGF 961
             SL++  K A    K       ++F          +++          V  + E+  LG 
Sbjct: 884  SSLEDALKAADQHAKAEAIGQTDMFGVLAEKPEQVELSYASTPKWPEQVVLDGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP+  Y   + +       ++   T RG    +  +V++ +   T++G+RIG  T 
Sbjct: 944  YLTGHPITSYLKEIERYTNGLRLKDVSPTPRGQVTTVVGLVLASKILTTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   E   F
Sbjct: 1004 DDRSGRLEIMLF 1015


>gi|257139773|ref|ZP_05588035.1| DNA polymerase III subunit alpha [Burkholderia thailandensis E264]
          Length = 1174

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1044 (39%), Positives = 607/1044 (58%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI GC + I  +D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   AGIKPIAGCDVWITNRDDRDKP----------SRLLLLVKNKRGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL+    +GL+ L+G   G I  A    +   A +    + ++F    Y+
Sbjct: 110  YRGRAELDASWLEGELADGLLALSGAQQGDIGLALAAGNEAAARRHAQRWAQVFPGGFYL 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LP F   +   
Sbjct: 230  RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GLE RLAQ    +         Y QRLDFE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSQEGLEKRLAQLYPDEAEREAQRDKYNQRLDFECGTIKKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++   +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLPPDINQSHYRFEPVAQAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ A
Sbjct: 826  GKPSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GALD    +R QLL S+    + A+    N       +F    G  + +  L      + 
Sbjct: 886  GALDSLHANRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + + 
Sbjct: 943  KRRLQEEKAALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022


>gi|303253323|ref|ZP_07339472.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 2 str. 4226]
 gi|307248125|ref|ZP_07530153.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 2 str. S1536]
 gi|302648005|gb|EFL78212.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 2 str. 4226]
 gi|306855302|gb|EFM87477.1| DNA polymerase III subunit alpha [Actinobacillus pleuropneumoniae
            serovar 2 str. S1536]
          Length = 1158

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1048 (38%), Positives = 602/1048 (57%), Gaps = 39/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   FVHL+VHS +S++     +  ++    A+   A+A+TD +N    ++F  +A  
Sbjct: 1    MTQQ-RFVHLKVHSDFSMINSLAKVKPLVKAAVANNMVAMALTDFSNFCGLVKFYGEALG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +  + + +              + LL     GY  +  L+S+ Y    
Sbjct: 60   SGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAYQQGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              +   +  +WL E+  EG+I+L+G  +G + +A    +   A++ +  +++ F +  Y+
Sbjct: 110  V-EFPLVEKAWLAEL-NEGIIVLSGERNGDVGKALLKENEAEADELVGFYQQYFPNHYYL 167

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  +   
Sbjct: 168  ALCRTGRADEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDP 227

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP+  +P  Y ++  EM ++F+DLP+A+ENTV+IA RC+  +++               
Sbjct: 228  KRPKKYSPQQYFRSEQEMCALFADLPQAVENTVQIAMRCNVTVRLGEYF-----LPNFPT 282

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLI
Sbjct: 283  GDLSTEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLI 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 343  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 402

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+ KLI
Sbjct: 403  VDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLI 462

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 463  PPDPGMTL-AKAFDAEPKLPELYEADEEVKELIDMARKLEGVTRNAGKHAGGVVIAPTAI 521

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR       
Sbjct: 522  TDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKE 581

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP
Sbjct: 582  PVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGP 641

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +++ +V       + N +         H  + P+L  T GVI+YQEQVMQIAQ+L+GY+L
Sbjct: 642  LESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILDPTYGVIVYQEQVMQIAQVLAGYTL 701

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 702  GGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+    
Sbjct: 762  AYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSGKHR 821

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y L AIKGVG      I+EA   D  F  L D  +RVD KK+NRR  E L
Sbjct: 822  FSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFDLTARVDLKKINRRTFEGL 881

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+++L++  K +    K       ++F     T  + +       
Sbjct: 882  IMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTP 941

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +     E E+  LG Y SGHP+  +   L         E   T RG  + +A +++  
Sbjct: 942  KWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGS 1001

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++GSR+G  T  + + + +   F
Sbjct: 1002 RIAVTKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|213691712|ref|YP_002322298.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
            infantis ATCC 15697]
 gi|213523173|gb|ACJ51920.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
            infantis ATCC 15697]
          Length = 1185

 Score =  745 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/1064 (32%), Positives = 540/1064 (50%), Gaps = 52/1064 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E      A G++PI
Sbjct: 8    FVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKPI 67

Query: 71   IGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IG +  +  +                     +    +  + +     EG   LI+  S  
Sbjct: 68   IGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSVA 127

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             L  +  +  R+    L    ++G+I  +G  SG I           A +    F+ +FG
Sbjct: 128  NLEGRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 186

Query: 180  -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    +      ++ +A     PL+ATN+S ++  ED +A D ++ +   
Sbjct: 187  KDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINSG 246

Query: 238  TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
            + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H        
Sbjct: 247  SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAFMPK 306

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                +    +E +    K   GLE R        G    D  ++ D+E  VI +M+F GY
Sbjct: 307  FPCPEG--WDETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFCGY 358

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+R+S+P
Sbjct: 359  FLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVSLP 418

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S  +++ 
Sbjct: 419  DIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKVT 478

Query: 477  KLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHAS 526
            K +P        +SL  I D +         FRE   +DP   R+ E ++ +EGL R   
Sbjct: 479  KALPPAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITEEAKGIEGLIRQTG 538

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HA   ++G  P++   P+  +       T F     E  GL+K DFLGL  LT++  +L
Sbjct: 539  VHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIHDTL 597

Query: 587  DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
              +       +D + IP DD ETY L++   TLG+FQL+S GMR  L+ ++PD   DI A
Sbjct: 598  KNIVANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFNDISA 657

Query: 646  LVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIA 699
            L++LYRPGP+       Y  RKNG +KI  IHP ++  LK+    T G+IIYQEQV   A
Sbjct: 658  LIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQSAA 717

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            ++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  ++++L  F+ Y
Sbjct: 718  RILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPFSGY 777

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+  IQ++ P
Sbjct: 778  AFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQVLSP 837

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDSKKL 877
             VN    ++    + + + L AI+ VG      I+         F +  DF  RV    L
Sbjct: 838  DVNESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPLTAL 897

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NRR++ESL+ AGA D    +R  L    +        +++ +     ++F+  +   ++ 
Sbjct: 898  NRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDGGAEA 957

Query: 938  -----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR- 991
                 +T+      +   +   E+ +LG Y S HPL   + IL  +        V   R 
Sbjct: 958  MGDASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVDRART 1017

Query: 992  ---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1018 MGEGQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSVQCMFF 1061


>gi|258653337|ref|YP_003202493.1| DNA polymerase III subunit alpha [Nakamurella multipartita DSM 44233]
 gi|258556562|gb|ACV79504.1| DNA polymerase III, alpha subunit [Nakamurella multipartita DSM
            44233]
          Length = 1175

 Score =  745 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1061 (33%), Positives = 545/1061 (51%), Gaps = 40/1061 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  + SFVHL VH+ YS+L+GA  L  +  + A    PA+A+TD  N+F A +F ++A A
Sbjct: 1    MSNTDSFVHLHVHTEYSMLDGAARLGELFARTAELGMPALAMTDHGNVFGAHDFYRQARA 60

Query: 65   AGIQPIIGCQLDIDMQ-DNLKMT--------NQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            AG+ PIIG +  +         T        +   +       I LL  T +G   L  L
Sbjct: 61   AGVNPIIGMEAYLTPNTSRFDKTRVRWADGGDDDVSGAGAYTHITLLSETTQGMHNLFRL 120

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             SR  L +      R     L E  + GLI  TG  SG +       +   A      F+
Sbjct: 121  ASRASL-EGFFYKPRADRELLSEY-SAGLIGTTGCPSGEVQTWLRIGNYDKALASAAEFR 178

Query: 176  KLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             + G +  +V L  H    +      +++LA   +LP++ATN+  + ++ D  AH+ L+ 
Sbjct: 179  DILGKENYFVELMDHGLSIETRVRDGLIRLARDLQLPMIATNDLHYTNKADASAHEALLC 238

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            V     +   +R +   D +       +         L    +     +    V      
Sbjct: 239  VQSGKTLDDPNRFKFDADDFYLKSPAEMRALWADKYDLREACDNTLLIAERCSVAFDEAS 298

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             ++ +      + E+     +   GL +R   G         + R++ D+E+ VI  M F
Sbjct: 299  SYMPRFPVPAGETEQTWFVKEVDKGLAIRFPGG------IPPEVRKQADYEVGVITAMNF 352

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFL+VADFI WAK + I VGPGRGSGAGS+ AYA+ ITD++PL   L+FERFLNPDR+
Sbjct: 353  PGYFLVVADFINWAKDHGIRVGPGRGSGAGSMVAYAMRITDLNPLVHGLIFERFLNPDRV 412

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPDFD+DF + RR +VIRYV  +YG +RVAQI+T+G+++AK A++D  R L MP+S  D
Sbjct: 413  SMPDFDVDFDERRRGDVIRYVTERYGDDRVAQIVTYGTIKAKQAVKDSARVLGMPFSVGD 472

Query: 474  RLCK-LIPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRH 524
            R+ K + P      V L  I + S         FR     DP V ++++ ++ LEGL R 
Sbjct: 473  RITKVMPPPVMGKDVPLSKIFEPSDPRYNEGTEFRTLVDTDPDVRKVVDTARGLEGLKRQ 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HAAG+++   PL  L+P+ +  +    +TQF+    EK GLIK DFLGL+ LT+L  
Sbjct: 533  WGVHAAGVIMSSAPLLDLIPIMKREQDGAIITQFDYPTCEKLGLIKMDFLGLRNLTILDD 592

Query: 585  SLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            ++  +   R + + L  +P DD  TY LL+   TLG+FQL+   MR  L  M+PD  EDI
Sbjct: 593  AVGNIRANREIDLVLEDLPLDDKATYELLSRGDTLGVFQLDGGPMRALLRSMRPDNFEDI 652

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQ 697
             A+++LYRPGP+  ++   Y +RK G++ +  IHP     +  +L +T G+I+YQEQVM 
Sbjct: 653  SAVIALYRPGPMGANSHNEYADRKTGRKPVTPIHPELADALQDLLGDTYGLIVYQEQVMA 712

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IAQ L+GY+L  AD+LRRAMGKK K E+D Q E F  G +  G S      ++++L  F+
Sbjct: 713  IAQHLAGYTLGAADLLRRAMGKKKKAELDAQYETFSGGMAGRGYSPHAIKTLWDILLPFS 772

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            DY FNK+H+AAY ++SY TA++K +YP E++AA +T   D+ +K+  +  + R   I++M
Sbjct: 773  DYAFNKAHSAAYGMLSYWTAYLKANYPAEYMAALLTSVGDDKDKMAIYLAECRSMGIKVM 832

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876
             P VN    +F      I + L+AI+ VGT     I+    D   +    DF  +VD+  
Sbjct: 833  APDVNASVQNFAPVGTDIRFGLSAIRNVGTGVVASIVACRKDKGAYTDFYDFLDKVDATA 892

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             N++V+ESL+ AGA D  G+ R  LL            ++K       ++F         
Sbjct: 893  CNKKVVESLIKAGAFDSMGHPRKGLLMDHVRAIDEVLGLKKAEAIGQFDLFGEMSQEEKG 952

Query: 937  KITLEKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRG 992
                        ++ +R   E+ +LG Y SGHPL   + IL         + +       
Sbjct: 953  DTFRGNVPDTEWDTKLRLGFEREMLGLYVSGHPLAGVEHILSAQSDASIPDVLDGTIPDR 1012

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              I +  ++ + Q++ T+KG      T  + A   E  FFP
Sbjct: 1013 ALITVGGILTNLQRRLTKKGDPWASATLEDLAGGVEVAFFP 1053


>gi|320093964|ref|ZP_08025792.1| DNA-directed DNA polymerase III alpha subunit [Actinomyces sp. oral
            taxon 178 str. F0338]
 gi|319979098|gb|EFW10613.1| DNA-directed DNA polymerase III alpha subunit [Actinomyces sp. oral
            taxon 178 str. F0338]
          Length = 1179

 Score =  745 bits (1922), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/1066 (32%), Positives = 551/1066 (51%), Gaps = 46/1066 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL  HS YS+L+GA     +  + A   QPAI +TD   LF A +F     +
Sbjct: 1    MASDP-FVHLHNHSEYSMLDGAAKTQAMAQEAARLGQPAIGLTDHGYLFGAYDFYTNCVS 59

Query: 65   AGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
            AG++PIIG +  +                    +   +   +   + L+  + +G   L 
Sbjct: 60   AGVKPIIGLEAYVTPGTSRFDRHKVTWGEPWQRSDDVSAGGSYNHLTLIAYSTQGMHNLF 119

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             L S      Q  +  R     L +   EGLI+ TG  SG +           A      
Sbjct: 120  RLGSYASTDGQFGKWPRADKELLAKFH-EGLIVFTGCPSGAVQTRLRLGQWDEAVAEAAE 178

Query: 174  FKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             + +FG +  YV +  H    +R   SQV+++A     PLVATN+S ++ +ED +  D L
Sbjct: 179  LRDIFGPENFYVEVMDHGIDIERRVHSQVLEIARLMNAPLVATNDSHYVKKEDRKIQDAL 238

Query: 232  MAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + +     ++  DR +   D +++++  EM  ++ +LP A + T+EIA RC         
Sbjct: 239  LCINSGARINDPDRFKFDGDGYFIRSSQEMRELWRELPGACDATLEIAERCDVRFTTTKE 298

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                ++        +++ +    +   GL  R   G         D R++  +E +VI  
Sbjct: 299  GAN-YMPDFPVPEGEDKTSWFVKEVERGLNDRFPGG------IPDDVREQAQYEEDVIIS 351

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F GYFL VAD+I WAK   I VGPGRGSGAGS+ AYA+ IT+++PL   L+FERFLNP
Sbjct: 352  MGFPGYFLTVADYINWAKSQGIRVGPGRGSGAGSMVAYAMKITELNPLEHGLIFERFLNP 411

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFD+DF + RRDEVI YV+ KYG +R++Q++T+G+++ K AL+D  R L   + 
Sbjct: 412  ERISMPDFDVDFDERRRDEVIAYVKRKYGEDRISQVVTYGTIKTKQALKDSARILGKDFK 471

Query: 471  QVDRLCKL-IPNDPAHPVSLQAIADD--------SRFREARLADPSVDRLLEISQKLEGL 521
              ++L K   P      +S+  I D         + FR+    +P    +++ +  LEGL
Sbjct: 472  MGEQLTKALPPAIMGKDISVAGIFDQGDKRYGEAAEFRKFYEDNPDTHEVVQYALGLEGL 531

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R    HA  +++    L+ ++P+ +  +    +TQF+    E  GL+K DFLGL+ LT+
Sbjct: 532  TRQWGVHACAVIMSSHTLTDIIPIMKRPQDGAIITQFDYPTCETLGLLKMDFLGLRNLTV 591

Query: 582  LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +L+ +A       DL  I FDD +TY LL    TLG+FQL+  GMR  L+ M+PD  
Sbjct: 592  VSDALENIAINGKEDPDLDHIRFDDAKTYELLGRGDTLGVFQLDGGGMRDLLKLMKPDNF 651

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQ 694
            EDI A+ +LYRPGP+  ++   Y  RKNG+++I  IHP +   L+     T G+I+YQEQ
Sbjct: 652  EDISAVGALYRPGPMGANSHTNYALRKNGRQEITPIHPELAEPLEEILGTTFGLIVYQEQ 711

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VMQIAQ L+GY+L +AD+LR+AMGKK KE +D+Q + F  G   NG S+     +++++ 
Sbjct: 712  VMQIAQKLAGYTLGQADILRKAMGKKKKEVLDQQFKGFRQGMVDNGYSEESIKALWDVVV 771

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+ Y FNK+H+AAY ++SY TA++K +YP E++AA +T   DN ++   +  + R  +I
Sbjct: 772  PFSAYAFNKAHSAAYGLVSYWTAFLKANYPTEYMAALLTSTKDNKDRRALYLAECRHMDI 831

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVD 873
             ++PP VN    +F      I + L+A++ VG      I+ A  +   F S +DF  +V 
Sbjct: 832  TVLPPDVNASMGNFAPDGEAIRFGLSAVQNVGGPVVEAIVGAREEKGRFASFQDFLDKVP 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HE 930
                N+R ++SL+ AGA D  G++R  LL   D        V++N      ++F      
Sbjct: 892  QVVCNKRTIQSLIRAGAFDSMGHTRRALLARCDEAVDAVIDVKRNEAIGQFDLFGGLDDG 951

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---V 987
             G  S  I +      +   +   E+ +LG Y S HPL   +  L +       +     
Sbjct: 952  AGGSSLAIDIPDLPEFDRKQKLAAEREMLGLYVSDHPLRGLEGALARHQDYEIAQVVGSE 1011

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +    +++A +V     K T++G+     T  + +   E  FFP
Sbjct: 1012 GAMADRVVKIAGLVSGVTTKVTKQGNAWAIATIEDLSGSVEVLFFP 1057


>gi|288916170|ref|ZP_06410550.1| DNA polymerase III, alpha subunit [Frankia sp. EUN1f]
 gi|288352361|gb|EFC86558.1| DNA polymerase III, alpha subunit [Frankia sp. EUN1f]
          Length = 1178

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1068 (33%), Positives = 560/1068 (52%), Gaps = 50/1068 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S  FVHL VH+ YS+L+GA  L ++  +++    PA+AITD   ++ A +F ++A A
Sbjct: 1    MPNS--FVHLHVHTEYSMLDGAARLKDMFSEVSRQGMPAVAITDHGYMYGAYDFYRQATA 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG++PIIGC+  +  +  L                 +   +   + +      G   L  
Sbjct: 59   AGVKPIIGCEAYVAPESRLLKQRVRWGDPNQKSDDVSGGGSYTHMTMWARNETGLHNLFR 118

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L SR  +     +  R+    + E   EGL+  TG  SG +           A K    +
Sbjct: 119  LNSRASIEGHYIKWPRMDSEIIAE-HAEGLMATTGCPSGEVQTRLRLGHYDEALKAAAKY 177

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +++FG +  +  +  H    +R     ++ +A   ++  V TN+S +  E +   H  L+
Sbjct: 178  QEIFGRENFFCEIMDHGIEIERRVRDGLIDIARALDMRFVVTNDSHYTYESERATHSALL 237

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             V  ++ ++          +YLK+  +M +I  D  +A +   E     +  ++      
Sbjct: 238  CVQTASTIANPTFQFEGSGYYLKSAEQMYAI--DTSDAWQQGCETTLMIAERVEPAGMFT 295

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             R +         + EE+  R +  AG++ R   G        +++R R+++EL VI  M
Sbjct: 296  KRNLMPRFPVPDGETEESWFRKETWAGMDRRFPDGFD------EEHRTRVEYELGVILSM 349

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFL+VADFI WAK   IPVGPGRGS AGS+ A+AL ITD+DP+  SLLFERFLNPD
Sbjct: 350  GFPSYFLVVADFIMWAKNQGIPVGPGRGSAAGSMVAFALGITDLDPIPHSLLFERFLNPD 409

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR +VIRYV +K+G +R+AQI+T+G+++AKAA++D  R L  PY+ 
Sbjct: 410  RVSMPDIDIDFDERRRGDVIRYVTDKWGEDRIAQIVTYGTIKAKAAIKDSSRVLGYPYAV 469

Query: 472  VDRLCKLIPN-DPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DR+ K +P       +             ++    R    +D  V ++++ ++ LEGL 
Sbjct: 470  GDRITKAMPPAVMGKDIPLSGIFDPKHARYSEAGEIRSLYESDADVRKVIDTAKGLEGLI 529

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R A  HAAG+++   P+   +P++R       +TQF+    E  GL+K DFLGL+ LT++
Sbjct: 530  RQAGVHAAGVIMSAEPIIDHIPVWRRDADGAIITQFDYPTCETLGLLKMDFLGLRNLTVM 589

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  +   RG+KVDL  +  +D  +Y LL    TLG+FQL+   MR  L  M+PD  E
Sbjct: 590  DDAVRNVESNRGLKVDLMGLELNDPPSYELLARGDTLGVFQLDGGPMRSLLRMMRPDNFE 649

Query: 642  DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQV 695
            DI A+++LYRPGP+  ++ + Y  RKNG+++I  IHP +       L  T G+I+YQEQV
Sbjct: 650  DISAVLALYRPGPMGANSHINYALRKNGQQEITPIHPQLAEPLADILDTTYGLIVYQEQV 709

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M IAQ ++GY+L +AD+LRRAMGKK KE +DK+   F  G   NG S      ++++L  
Sbjct: 710  MAIAQRVAGYTLGQADLLRRAMGKKKKEILDKEFVPFSDGMKANGFSAEAIKMLWDILVP 769

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            F+DY FNK+H A Y ++SY TA++K ++P E++AA +T   D+ +K   +  + R+  I+
Sbjct: 770  FSDYAFNKAHTAGYGLVSYWTAYLKANFPAEYMAALLTSVRDDKDKSAIYLNECRRMGIR 829

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873
            ++PP VNT   D+   GDN I   LAAI+ VG      I+     K  F S  DF  +VD
Sbjct: 830  VLPPDVNTSDADYTAHGDNEIRVGLAAIRNVGVNVVESIVRNRKAKTRFASFPDFLDKVD 889

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +   N+R +ESL+ AGA D  G++R  L +  +        V+K       ++FA +   
Sbjct: 890  AVVCNKRTVESLIKAGAFDSLGHTRRGLAEKHEQAVDAVMGVKKKNAEGQFDLFAFDGEG 949

Query: 934  FSDKIT----LEKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              +       +++FS    + S+    E+ +LG Y S HPL   + IL            
Sbjct: 950  GEEDAAPIFGVQEFSDQEWDKSLLLSLEREMLGLYVSDHPLLGVEHILAAKADCSIAALN 1009

Query: 988  --ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  G+ + +  ++   Q+K T++G      T  +     E  FFP
Sbjct: 1010 GGEYPDGSVVTIGGIISGLQRKVTKQGKLWALATVEDMGGGLEVMFFP 1057


>gi|257068282|ref|YP_003154537.1| DNA polymerase III subunit alpha [Brachybacterium faecium DSM 4810]
 gi|256559100|gb|ACU84947.1| DNA polymerase III, alpha subunit [Brachybacterium faecium DSM 4810]
          Length = 1191

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1076 (35%), Positives = 561/1076 (52%), Gaps = 56/1076 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              S  FVHL VH+ YSLL+GA  ++ ++ +     QPA+AITD   LF A EF + A  A
Sbjct: 4    SSSDDFVHLHVHTDYSLLDGAAKIDKLVAETVRQGQPAVAITDHGYLFGAYEFYKAAKDA 63

Query: 66   GIQPIIGCQLDIDMQD-------------NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            GI+PIIG +  +                   ++     +       + LL  +  G   L
Sbjct: 64   GIKPIIGIEAYVTPGTSRHDRTRTQWGTREQQLAGDDVSARGAYTHMTLLSHSTTGMHNL 123

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
              L S   L  Q  +  R+    L +  ++GLI  TG  SG +           A K   
Sbjct: 124  FRLGSAASLEGQMGKWPRMDREILSQY-SDGLIATTGCPSGEVQTRLRLGQFDEAVKAAG 182

Query: 173  TFKKLFG-DRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             F+ +FG +  +V L  H      R S+ ++++A     PL+ATN+  +++E+D    DV
Sbjct: 183  EFQDIFGKEHYFVELMDHGLDIEKRVSKDLLEVAKAVGAPLLATNDLHYVTEQDATIQDV 242

Query: 231  LMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
            L+ +   + ++  DR +     +YLK+  +M  +F ++PEA +NT+ +A  C    +  A
Sbjct: 243  LLCINSGSRLNDPDRFKFGGSGYYLKSAQQMRELFREMPEACDNTLRVAEMCDVEFRTTA 302

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                 ++        ++EE+    +   GLE R   G         D ++R D+E++VI 
Sbjct: 303  EGAN-YMPHFPTPPGEDEESWFVKEVQRGLEYRYPAG------IPDDVQKRADYEVSVIL 355

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFL+V+D+I+WAK+ +I VGPGRGSGAGS+ AYA+ ITD+DPL   LLFERFLN
Sbjct: 356  QMGFPGYFLVVSDYIKWAKEQDIRVGPGRGSGAGSMVAYAMRITDLDPLEHGLLFERFLN 415

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            PDR+SMPDFD+DF   RR EVI YV+ KYG +R+AQ+ T+G ++ K +L+D  R L  P+
Sbjct: 416  PDRVSMPDFDVDFDDRRRGEVIEYVERKYGDDRIAQVATYGVMKTKNSLKDAARVLDYPF 475

Query: 470  SQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEG 520
            S  DRL K +P       +S++ I D           FR     DP V +++EI++ +EG
Sbjct: 476  SMGDRLSKALPPTVMGKDISVKGIFDPEDKRYAEAGEFRRIHDEDPDVQKVVEIAKGVEG 535

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R    HA  +++   PL  +VPM R       +TQF    +E  GL+K DFLGL+ LT
Sbjct: 536  LTRGWGVHACAVIMSSDPLVDIVPMMRRPSDGQIITQFEYPTLETLGLLKMDFLGLRNLT 595

Query: 581  LLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            +L  ++  +A+      DL  +PFDD  TY LL    TLG+FQL+ SGMR  L  M+PD 
Sbjct: 596  VLSDAVANMARNGKTPPDLETLPFDDPATYELLQKGDTLGVFQLDGSGMRTLLRQMKPDQ 655

Query: 640  IEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQE 693
              DI A+ +LYRPGP+       Y  RKNG ++I  IHP ++      L ET GV++YQE
Sbjct: 656  FGDITAVSALYRPGPMGMGSHTNYALRKNGLQEITPIHPELEEPLAEILDETYGVLVYQE 715

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ AQ ++GYSL EAD+LRRAMGKK K E+DKQ   F +G   NG S      ++E L
Sbjct: 716  QVMQTAQKVAGYSLGEADILRRAMGKKKKAELDKQYVSFEAGMKSNGYSDAAVQALWETL 775

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FADY FNKSH+AAY V+SY TA++K ++P E++AA +T   +N +++  +  D R   
Sbjct: 776  LPFADYAFNKSHSAAYGVVSYWTAYLKANHPTEYMAALLTSTQENRDRLGLYLGDCRHRG 835

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRV 872
            I ++PP VN   + F      I + L+AI+ VG      I++   +   F S  DF  +V
Sbjct: 836  ITVLPPDVNESDLYFSAVGEDIRFGLSAIRNVGAHVVEEIIKTREEKGAFTSFTDFLDKV 895

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--- 929
                 N+R +ESL+  GA D  G +R  L+   ++       V++       ++FA    
Sbjct: 896  PLSVCNKRTIESLIKGGAFDELGANRRSLVLIHEDAVDSVVDVKRKEAQGQYDLFADMFA 955

Query: 930  ---------EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                          +  IT+      +   +   E+ +LG Y S HPL   + ++ +   
Sbjct: 956  GAGGDGEESMASGSAATITVPDLPEWDRKEKLAFERNMLGLYVSDHPLYGLEHVIAQNSS 1015

Query: 981  KGYEESVA---TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                          G  + +A ++ S Q+K T+KG      T  +     +   FP
Sbjct: 1016 TSISALADDGAVQDGTMVTIAGLITSLQRKTTKKGDMWAIATVEDLEGSIDCLLFP 1071


>gi|296536131|ref|ZP_06898260.1| DNA-directed DNA polymerase III alpha subunit [Roseomonas cervicalis
            ATCC 49957]
 gi|296263543|gb|EFH10039.1| DNA-directed DNA polymerase III alpha subunit [Roseomonas cervicalis
            ATCC 49957]
          Length = 1147

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 476/1035 (45%), Positives = 659/1035 (63%), Gaps = 22/1035 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS+YSL EGA+    + +   A   PA+A+TDT N+F ALEFS+     G+QP
Sbjct: 3    SFVHLHVHSAYSLAEGAIKAEKLAELAKAGGMPAVALTDTANMFGALEFSKACSGKGVQP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GCQL +            + P      +V L   AEG + +  L S+ +L D      
Sbjct: 63   IMGCQLFLTRGAADDRPEVLRLPPDP---VVALAMDAEGLENVQRLSSQGFLRDDPSGRP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGS-SGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
             + L  L++    G+ +LTG S +GP+ R         A + L   K+ F GDRL V L 
Sbjct: 120  TVTLELLKQ-HAAGVTLLTGPSTTGPLGRLLLEGRRDAALRLLEELKESFGGDRLVVELT 178

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH    +R  +  +V LA    LPL A N+  F   E YEAHD L+ +A    +++ DR 
Sbjct: 179  RHGLEIERALDPALVALADAAGLPLAAANDIYFSKPEMYEAHDALLCIAEGRTLAEPDRR 238

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            RVTP+H+ K+   M ++F+DLPEA +NT+ IARRC+ + +   P LP   + +       
Sbjct: 239  RVTPEHFFKSAEAMRTLFADLPEACDNTLAIARRCAIMAENRKPELPICPKVQP---GMT 295

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E   +R+ A  GLE RL   A  +      YR RL+FEL++I +M FSGYFLIVADFIQW
Sbjct: 296  EAETVRDMAKRGLEARLDAQATPEAERP-TYRTRLEFELDIIEKMGFSGYFLIVADFIQW 354

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+  IPVGPGRGSGAGSV A+AL ITD+DPLRF LLFERFLNP+R+SMPDFDIDFCQDR
Sbjct: 355  AKQQGIPVGPGRGSGAGSVAAWALLITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQDR 414

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI+YV+ +YG +RVAQIITFG LQAKA +RDVGR + MPY QV+++ +LIP +PA P
Sbjct: 415  RDEVIQYVRREYGEDRVAQIITFGRLQAKAVVRDVGRVMGMPYGQVNKIAELIPFNPAKP 474

Query: 487  VS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V+  QA+  + R +E R AD  VDRL+E +  LEGLYR+ASTHAAG+VIG +PL   V +
Sbjct: 475  VTLQQALDGEPRLQEMRQADEMVDRLMETALVLEGLYRNASTHAAGVVIGRKPLIDTVAL 534

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            YRD RSD+ VTQ++MK++E A L+KFDFLGLKTLT+LQ++++ LA +G+ +DL+ +P DD
Sbjct: 535  YRDPRSDMLVTQYSMKYVENASLVKFDFLGLKTLTVLQRAVEILAGQGITIDLAALPLDD 594

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +TY +L    + G+FQ E  GMR+ L  M+PD  ED+IA VSLYRPGP+ NI  Y  RK
Sbjct: 595  AKTYEMLARGDSAGVFQFEGQGMRECLRMMRPDRFEDLIAAVSLYRPGPMANIPAYCARK 654

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G E    +HP +  +++ET G+++YQEQVMQI+Q ++GYSL  AD+LRRAMGKKI+ EM
Sbjct: 655  HG-EAWEPVHPAMRHLVEETYGILVYQEQVMQISQDVAGYSLGGADLLRRAMGKKIRSEM 713

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            + Q++ F+ GA KNG+ +  A  IF+L+ KFA+YGFNKSHAAAYA+++Y TA++K ++PV
Sbjct: 714  EAQRKIFVDGAVKNGVPEGKAGEIFDLMEKFAEYGFNKSHAAAYALVAYHTAYLKANHPV 773

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYYSLA 840
             FLAASMTL++D  EK+    Q+A +  I ++PP VN    +FKV         I ++LA
Sbjct: 774  AFLAASMTLDLDKTEKLANHMQEASRLGIPVLPPDVNRSAAEFKVETMEDGRQAIRFALA 833

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            A+K VG    + ++ A  A  PF S+ +F  RVD K LN+  LE+L  AGA D    +R 
Sbjct: 834  AVKRVGMQAMQDLVRARDAKGPFRSIAEFAGRVDPKLLNKMQLENLARAGAFDSLEKNRA 893

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            ++  + + + + AQ   + R +    +F     +  + + L          R   E   +
Sbjct: 894  RMTMAAEVVLRRAQSSAEERNSSQIGLFGG-GDSRPEPLRLPNVPDWPELERLTQEAEAV 952

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNI-RLAAMVVSKQQKKTRKGSRIGW 1017
            GF+ S HPLD YK +LRK+ +    +  A    G  + ++A  VV+ +++ TR GSR+ W
Sbjct: 953  GFHLSAHPLDTYKEVLRKLRVTSIAQLQAKAEAGAAVLKIAGTVVNSKERTTRTGSRMAW 1012

Query: 1018 VTFSEPAKEYEANFF 1032
            +  S+ +   E   F
Sbjct: 1013 LKLSDSSGSTEVTLF 1027


>gi|167856189|ref|ZP_02478926.1| DNA polymerase III subunit alpha [Haemophilus parasuis 29755]
 gi|167852678|gb|EDS23955.1| DNA polymerase III subunit alpha [Haemophilus parasuis 29755]
          Length = 1158

 Score =  744 bits (1920), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1046 (39%), Positives = 601/1046 (57%), Gaps = 38/1046 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+VHS +S++ G   +  ++    A+   A+A+TD  N    + F  +A  +G
Sbjct: 2    SQPRFVHLKVHSDFSMINGLAKVKPLIKACVANNMVAMALTDFTNFCGLVRFYGEALGSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI+G  + +  +   +           +  + LL     GY  +  L+S+ Y      
Sbjct: 62   VKPIVGADVMVRPEPESE----------ELYELTLLAKNNTGYHNITLLLSKAYQQGYV- 110

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            +   +  +WL E   +G+I+L+GG +G + +A    + Q AE+ L  +++ F +  Y++L
Sbjct: 111  EFPVVEKAWLAE-HNDGVILLSGGRNGDVGKALLKENQQEAEQLLAFYQRYFHNHYYLSL 169

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R     + +   Q V  +    +PLVA N+ +FL ++D+EAH++ +A+  S  +    R
Sbjct: 170  CRTGRSDEEHYIQQAVTFSQKFAIPLVAVNDVMFLKQDDFEAHEIRVAIHDSFTLDDPKR 229

Query: 246  -PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              + +   Y ++  EM  +F+DLP+A+ENT+ IA+RC+  +++       +        +
Sbjct: 230  PQKYSEQQYFRSEDEMCQLFADLPQAIENTLFIAQRCNVTIRLGE-----YFLPNFPTGE 284

Query: 305  KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+ L  KA  GLE RLA        +      Y +RL  EL+VI +M F GYFLIV 
Sbjct: 285  LSTEDFLVKKAKEGLEERLAFLFPDPDVRASKRSVYDERLQVELDVINQMGFPGYFLIVM 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 345  EFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC D RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PYS VDR+ KLIP 
Sbjct: 405  FCMDGRDRVIEHVSETYGCQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPP 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            DP   +  +A   + +  E    D  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 465  DPGMTL-AKAFEAEPKLPELYDTDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTAITD 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKV 596
              P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR        V
Sbjct: 524  FSPLYFDSYGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLEKEGKPLV 583

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +  IP DD + + LL    T  +FQLES GM+  +  +QP   EDIIALV+L+RPGP++
Sbjct: 584  RIESIPLDDEKAFKLLKAAKTTAVFQLESRGMKDLISRLQPSNFEDIIALVALFRPGPLE 643

Query: 657  NIVVYN--NRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            + +V N  +RK+GKE I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  
Sbjct: 644  SGMVQNFIDRKHGKEPIAYPDAQYQHESLQPILEPTYGIIVYQEQVMQIAQVLAGYTLGG 703

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM  Q+  F  GA K GI   +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 704  ADLLRRAMGKKKPEEMAAQRATFEEGAKKQGIDGELAMKIFDLVEKFAGYGFNKSHSAAY 763

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQT W+KTHYP EF+AA MT EMDN +KI  F  +     + ++PP +N+    F 
Sbjct: 764  ALVSYQTLWLKTHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDINSGKHRFS 823

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V +   I Y L AIKGVG      ++EA   D  F  L D  +RVD +K+NRR  E L+ 
Sbjct: 824  VNEKGEIVYGLGAIKGVGEGPIDAMLEARNKDGIFKDLFDLTARVDLRKVNRRTFEGLIM 883

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946
            AGA D  G  R  L+++L++  + +    K       ++F     T  + +         
Sbjct: 884  AGAFDKLGPHRAALMKNLEDALRASDQHNKMEALGQSDMFGVLTETPEEVQNAYANTPKW 943

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                  +NE+  LG Y SGHP+  +   L         E   T RG    +A +++  + 
Sbjct: 944  TEQTILDNEKATLGLYLSGHPVGRFLKELAHYAPNKLNEVQPTYRGQTTTVAGLIMGARI 1003

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T+KGSRIG  T  + + + +   F
Sbjct: 1004 ATTKKGSRIGIATIEDRSGKMDLTLF 1029


>gi|283783561|ref|YP_003374315.1| DNA polymerase III subunit alpha [Gardnerella vaginalis 409-05]
 gi|283441761|gb|ADB14227.1| DNA polymerase III subunit alpha [Gardnerella vaginalis 409-05]
          Length = 1188

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/1074 (32%), Positives = 547/1074 (50%), Gaps = 56/1074 (5%)

Query: 5    LEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            + +  + FVHL  H+ YSLL+GA  + +++ +      PA+AITD  N+  A E    A 
Sbjct: 1    MTQPETNFVHLHNHTHYSLLDGASKIPDLVARAKELGMPAVAITDHGNMHGAYEMWSTAV 60

Query: 64   AAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
             AGI+PIIG +  +  +                     +    +  + L      G   L
Sbjct: 61   KAGIKPIIGIEAYVTPETARQDKSRVHWGTEDQRADDVSGGGLITHMTLWAENDTGLTNL 120

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
            ++  S   L  +  +  R+    L    ++G+I  +G  SG I         + A +   
Sbjct: 121  LKASSVANLEGRVMRYPRMDKDVLSTY-SKGVIASSGCPSGIIQTRLRLGQFKEALRAAG 179

Query: 173  TFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             F+ +FG D  ++ L  H    +      ++++A     PL+ATN+  ++ EED EA D 
Sbjct: 180  EFQDIFGRDNFFIELMNHGLSIETRVTKDLLEIAKKLNAPLLATNDLHYVHEEDREAQDA 239

Query: 231  LMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
            ++ +   + +   DR +     +YLK+  +M  +F + PEA +NT+EIARRC+ +     
Sbjct: 240  MLCINSGSRLDDPDRFKFDGSGYYLKSAEQMRELFKEFPEACDNTLEIARRCNVMFDDGE 299

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                       +    +E +    K   GLE R             +  ++ D+E  VI 
Sbjct: 300  DGAFMPQFDCPEG--WDETSLFLKKVEEGLERRYNNN------IPMEVLKQADYECGVIC 351

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++  L+FERFLN
Sbjct: 352  QMQFCGYFLVVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPMKHGLIFERFLN 411

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+S+PD D+DF  D R +V+ YV  KYG ++VAQ + +G+++ K AL+D  R +   +
Sbjct: 412  PERVSLPDIDVDFDPDGRAKVLEYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGYEF 471

Query: 470  SQVDRLCK-LIPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEG 520
            S  +++ K L P      +SL  I D+          FRE    DP   R+ E ++ +EG
Sbjct: 472  SVGEKITKVLPPAKNGKDMSLHDIFDEKSKRYAEAREFREMYDTDPDTHRITEEAKGIEG 531

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R    HA   ++G  P++   P+  +       T F     E  GL+K DFLGL  LT
Sbjct: 532  LIRQTGVHACATIMGSEPITNTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLT 590

Query: 581  LLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            +++ +L  +       +D + IP DD  TY LL+   TLG+FQL+S GMR  L  ++PD 
Sbjct: 591  VIRDTLRNIENNGKDPIDYTKIPLDDKATYQLLSRGDTLGVFQLDSDGMRALLRTLKPDN 650

Query: 640  IEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQE 693
              DI AL++LYRPGP+D      Y  RKNG + I+ IHP     +  +L ET G+I+YQE
Sbjct: 651  FNDISALIALYRPGPMDMDSHTNYAKRKNGLQDIIPIHPEVAEPLKEVLDETYGLIVYQE 710

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QV   A++L+GYSL +ADVLRRAMGKK  E + K++  F  G   +G S+  A  ++++L
Sbjct: 711  QVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEQVPFFEGMKAHGYSEEAAQAVWDVL 770

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +  E  N +K   +  +AR+  
Sbjct: 771  VPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQNERTNKDKTALYLGEARRMG 830

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSR 871
            IQ++ P VN   +++    + + + L AI+ VG      I+         F +  DF  R
Sbjct: 831  IQVLQPDVNESVLEYSAVGDVVRFGLGAIRNVGDKAVNDIITEREGERGRFVNFMDFVQR 890

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--- 928
            V    LNRR++ESL+ AGA D    +R  L Q  D        +++ +     ++FA   
Sbjct: 891  VPISALNRRLVESLIKAGAFDSIDSNRRALFQICDPAIDSVIALKRKQAEGQFDLFADLD 950

Query: 929  ------HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
                   + G    +IT+      +   +   E+ +LG Y S HPL     +L  +    
Sbjct: 951  SSSDSDDDNGMGDMQITVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGLSAVLADLREMS 1010

Query: 983  YEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + +        G  + +A +V S  ++ +RKG+    VT  +     +  FF
Sbjct: 1011 IAQLIDRARTMSDGQQVTIAGLVTSVDRRVSRKGNAWAIVTVEDMESSIQCMFF 1064


>gi|153006392|ref|YP_001380717.1| DNA polymerase III, alpha subunit [Anaeromyxobacter sp. Fw109-5]
 gi|152029965|gb|ABS27733.1| DNA polymerase III, alpha subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 1217

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1090 (36%), Positives = 618/1090 (56%), Gaps = 77/1090 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL +H+ YSLL+GA+ + ++L  + A     +A+TD  NLF A++F +KA  AG++
Sbjct: 2    PDFVHLHLHTLYSLLDGAIRIKDLLKTVQAKGMKTVAVTDHGNLFGAVDFYKKAKDAGVK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G +  +          +          ++LL   AEG+  L  L S+ +  +     
Sbjct: 62   PIMGMEAYVAGDKG-----RHDRSERVGRHLILLAKNAEGWANLRFLSSKAFT-EGFYYD 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
             RI    L++  ++GL+ LT   +G + R         A +    ++ +F     ++ +Q
Sbjct: 116  PRIDKQLLRD-HSKGLVGLTACLAGEVPRLARQGDMDGARRVAREYRDIFEPGSFFLEVQ 174

Query: 188  RHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +   ++    +++ QL     +PLVAT ++ ++S +D +AH+VLM +A +       R 
Sbjct: 175  SNGMREQLDVNAKLAQLGRDEGIPLVATADAHYVSRQDAKAHEVLMCIASNKTFQDPKRL 234

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  T   ++++  +MV+   +  EA++NT+ IA  C+  LQ+    LPRF   +      
Sbjct: 235  RHETDGLFIQSPDDMVAALPEYREAIDNTIRIAEMCNVELQLGKSFLPRFQLPDGV---- 290

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             EE  +   A  GL+ R  +      +    YRQRL+ EL VI +M FSGYFLIV DFI 
Sbjct: 291  SEEEWIEKLAKDGLDARFREIDGKYPHDRDAYRQRLEMELGVIKKMGFSGYFLIVQDFIN 350

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            W K++ IPVGPGRGSGAGS+ A++L ITD+DPLR++LLFERFLNP+R+SMPDFD+DFCQ+
Sbjct: 351  WGKQHQIPVGPGRGSGAGSIVAWSLRITDLDPLRWNLLFERFLNPERVSMPDFDVDFCQN 410

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI YV+ KYG + V QIITFGSL+A++ +RDV R + +P+++ D++ KL+P+    
Sbjct: 411  RRDEVIDYVREKYGKDNVGQIITFGSLKARSVIRDVVRVMGLPFAEGDKIAKLVPDPVQG 470

Query: 486  PVSL--------QAIADDSRFREARLADPSVDRLL---------------EISQKLEGLY 522
                          +  + R  E       + + +               +I+  LEGL 
Sbjct: 471  KTPPLKELVFGSDKMPAEPRLEELYKKPTVISQWVDEKGVQHTVTTKDLLDIAMSLEGLN 530

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R A  HAAG+VI D+PL   VP Y+D +S++ V+QF  + +E AGL+KFDFLGLKTLT++
Sbjct: 531  RQAGLHAAGVVIADKPLWDYVPAYKDDKSEMLVSQFAKEEVEAAGLVKFDFLGLKTLTVI 590

Query: 583  QKSLDFLAQRGVKVDLS---LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
              +L  + Q   ++       IP DD + Y L++   T G+FQ+ESSG  + +  M+P  
Sbjct: 591  DDALRMVKQNHPEMKDFTAADIPIDDPKVYELISRGDTAGVFQMESSGFTEMVIKMKPSR 650

Query: 640  IEDIIALVSLYRPGPID--------NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
             ED+IA  +LYRPGP+D         + VY +RK+G+EK+V  HP ++P+L+ T GVI+Y
Sbjct: 651  FEDVIAAGALYRPGPLDQKLEDGRTMVDVYIDRKHGREKVVYDHPKLEPVLEPTYGVIVY 710

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVMQI+Q+L+GYSL +AD+LRRAMGKK  E M K++  F++GA K+G+ + +A  IF+
Sbjct: 711  QEQVMQISQVLAGYSLGQADLLRRAMGKKKAEVMAKERVGFLAGAVKSGVDEKVAGGIFD 770

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            L+ KFA YGFNKSH+AAY +++ QTAW+K HYPVEF+AA ++ E  N +K+     +AR 
Sbjct: 771  LMEKFAAYGFNKSHSAAYGLLTVQTAWLKAHYPVEFMAALISSEASNTDKVVLHISEARA 830

Query: 812  FNIQIMPPSVNTPCVDF-----------------KVGDNRIYYSLAAIKGVGTTTARHIM 854
              I+++PP VN    DF                      RI + L A++GVG +  + I+
Sbjct: 831  DGIEVLPPDVNESDKDFGAFGPAESARPSTGPGRAANKGRIRFGLGAVRGVGDSAVQAIL 890

Query: 855  EASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
            EA A+  PF +L D  SRVDSKK+N++V+E+LV +GALD  G  R QL   +D+      
Sbjct: 891  EARAEGGPFKTLYDLASRVDSKKINKKVVEALVKSGALDFEGVPRWQLFAGIDSAFAAGA 950

Query: 914  WVEKNRTNKHENIFAHEKGTF-SDKITLEK---------FSVENSSVRFENEQRVLGFYF 963
              + +R +   ++F          K    +                VR   E+  LGFY 
Sbjct: 951  SAQADRASGQASLFGALPAAQVEQKPRYPRPGDVVGELTVEEWPERVRLAFEKEALGFYL 1010

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSE 1022
            +GHPL  Y+  +R+              G+ + +  +V + +++  + KG+R G++T  +
Sbjct: 1011 TGHPLQGYEKEVRRYASTTCAAVANKRHGDKVSVVGVVAAVRERMNKEKGTRFGFLTLED 1070

Query: 1023 PAKEYEANFF 1032
                 E   +
Sbjct: 1071 LTGTVEVVCW 1080


>gi|322514110|ref|ZP_08067180.1| DNA-directed DNA polymerase III alpha subunit [Actinobacillus ureae
            ATCC 25976]
 gi|322120040|gb|EFX92016.1| DNA-directed DNA polymerase III alpha subunit [Actinobacillus ureae
            ATCC 25976]
          Length = 1158

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1048 (38%), Positives = 606/1048 (57%), Gaps = 39/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   FVHL+VHS +S++ G   +  ++    A+   A+A+TD +N    ++F  +A  
Sbjct: 1    MTQQ-RFVHLKVHSDFSMINGLAKVKPLVKTAVANNMVAMALTDFSNFCGLVKFYGEALG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +G++PIIG  + +  + + +              + LL     GY  +  L+S+ Y    
Sbjct: 60   SGLKPIIGADIFVRPEPDSE----------DFFELTLLAKNNTGYHNITLLLSKAYQQGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              +   +  +WL E+  EG+I+L+GG +G + +A    +   A++ +  +++ F +  Y+
Sbjct: 110  V-EFPVVEKAWLAEL-NEGIIVLSGGRNGDVGKALLKENEAEADELISFYQQYFPNHYYL 167

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +L R    D  R   Q V  +  H+LPLVA N+ +FL E+D++AH++ +A+  S  +   
Sbjct: 168  SLCRTGRMDEERYIQQAVPFSQKHQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDP 227

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RP + +P  + ++  EM ++F+DLP+A+ENT++IA RC+  +++       +       
Sbjct: 228  KRPKKYSPQQHFRSEQEMCTLFADLPQAVENTLQIAMRCNVTVRLGE-----YFLPNFPT 282

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 E+ L  K+  GLE RL         +      Y +RL  EL+VI +M F GYFLI
Sbjct: 283  GDLSTEDFLVKKSREGLEERLEFLFPDPEERKNKRSVYDERLQVELDVINQMGFPGYFLI 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 343  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLAFDLLFERFLNPERVSMPDFD 402

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+ KLI
Sbjct: 403  VDFCMDGRDRVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLI 462

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 463  PPDPGMTL-AKAFDAEPKLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAI 521

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR       
Sbjct: 522  TDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLAREGKE 581

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V +  IP DD +++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP
Sbjct: 582  PVRIESIPLDDKKSFDLLLASKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGP 641

Query: 655  IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +++ +V       + N +         H  + P+L  T GVI+YQEQVMQIAQ+L+GY+L
Sbjct: 642  LESGMVQNFIDRKHGNEEVSYPDAQYQHESLKPILAPTYGVIVYQEQVMQIAQVLAGYTL 701

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM  Q+E F  GA K G+   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 702  GGADLLRRAMGKKKPEEMAAQREIFEKGAIKQGVDGDLAMKIFDLVEKFAGYGFNKSHSA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT EMDN +KI  F  +     + ++PP VN+    
Sbjct: 762  AYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGFYDECINMGLTVVPPDVNSGKHR 821

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I Y L AIKGVG      I+EA   D  F  L    +RVD KK+NRR  ESL
Sbjct: 822  FSVNEKGEIVYGLGAIKGVGEGPVEAILEAREKDGIFKDLFYLTARVDLKKINRRTFESL 881

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+++L++  K +    K       ++F     T  + +       
Sbjct: 882  IMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEEVQNAYANTP 941

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +     E E+  LG Y SGHP+  +   L         E   T RG  + +A +++  
Sbjct: 942  KWSEQTILEGERTTLGLYLSGHPIGRFLKELSHYAPVRLNELQPTRRGQVVTVAGIIMGS 1001

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++GSR+G  T  + + + +   F
Sbjct: 1002 RIAITKRGSRLGIATIEDRSGKLDMTLF 1029


>gi|328947381|ref|YP_004364718.1| DNA polymerase III subunit alpha [Treponema succinifaciens DSM 2489]
 gi|328447705|gb|AEB13421.1| DNA polymerase III, alpha subunit [Treponema succinifaciens DSM 2489]
          Length = 1213

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/1081 (32%), Positives = 557/1081 (51%), Gaps = 67/1081 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YS+L+GA  ++ ++ +      PA+A+TD  N+F +L F +     GI PI
Sbjct: 19   FVHLHVHSDYSILDGASKIDTLVARAKELNMPALALTDHGNMFGSLNFEKLCHVNGINPI 78

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPT---VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +G +  +    + +  +              ++LL     GY+ +  L S  Y       
Sbjct: 79   VGEEFYVAWGSHTEHNDVPFGRNGKNSHYFHLILLCENQTGYKNMSWLSSIAYTEGLYYG 138

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              RI    L++   EGLI L+    G + +       + A +    +K+LFG DR Y+ +
Sbjct: 139  KPRIDFELLKKYH-EGLICLSACIQGELPQLLLNGREEDAYRVAKEYKELFGPDRYYIEI 197

Query: 187  QRHRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H   ++   +  +++L+   ++PLV TN+  + +++D EA D L  +    ++ +  +
Sbjct: 198  QDHGLDEQKEVAVNLIKLSKDLDIPLVLTNDVHYCNKDDAEAQDALRCIGFKKLLDEPHQ 257

Query: 246  PRVT--PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC--- 300
                   + YLK   EM  +F + PEA+ NT++IA  C+  +  +     +         
Sbjct: 258  TMGGGRKEWYLKTEQEMSILFPNYPEAMANTIKIANMCNLTIHQYTTPELKGCLPRFSLP 317

Query: 301  ------DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                  +D  + +++ +R     GL VR  +         Q  R+R ++EL +I +M FS
Sbjct: 318  IEFQKHEDYTENQDDYVRCLVEKGLRVRYPE-------ITQAIRRRCEYELGIIFKMGFS 370

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV +FI WAK++ IP+GPGRGSGAGS+ AY +TITDIDP RF L+FERFLNP+R+S
Sbjct: 371  GYFLIVWEFINWAKEHGIPIGPGRGSGAGSLVAYCMTITDIDPFRFKLIFERFLNPERVS 430

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFDID   D R  +I++ +  YG  +V  I+TFG+L+ K  L DVGR L +P S V +
Sbjct: 431  MPDFDIDMDFDFRQNIIQHTRETYGEPQVGHIVTFGTLKPKNCLADVGRILNIPLSIVTK 490

Query: 475  LCKLIPNDPAHPVSL---------------QAIADDSRFREARLADPSVDRLLEISQKLE 519
            +   IP++P   +                   I+++               +    +KLE
Sbjct: 491  VKACIPDNPKAKLKNALEPPTDKFPDGGQLIPISENPETTIGLDKKTFDRWIALC-KKLE 549

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R+   HA+G+VIG   L    P+++D ++     Q+ M  IE  GL+KFD+LGLKTL
Sbjct: 550  GLIRNTGLHASGMVIGLTALPDWAPVFKDPKTGEVAVQYTMDIIEPCGLVKFDYLGLKTL 609

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFD----DHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            +L++ + + + +     +      +    D ET+ L     ++ IFQ ES GM++ L   
Sbjct: 610  SLIRYAENIINKHKKPDEPEFKTENVSETDSETFDLFCRGDSVAIFQFESPGMQKILRQC 669

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
            QP C+E+++AL +LYRPGP+D I  Y   K   E +    P ++ +LKET GV++YQEQV
Sbjct: 670  QPRCVEELVALNALYRPGPLDYIPQYIEGKWKPETVHYPDPCLEGILKETYGVMVYQEQV 729

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            MQ+AQ ++G+SL  AD+LRRAMGKK  E +  +K  F  GA K G +K  A  IF+++  
Sbjct: 730  MQVAQKIAGFSLGGADMLRRAMGKKKLEVLMGKKVEFEEGAIKQGYTKEHADEIFDIMVP 789

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA YGFNKSHAAAY V++Y+T W+KTH   EF+AA++T E+ + + + ++ ++AR+  I 
Sbjct: 790  FAGYGFNKSHAAAYTVLAYRTGWLKTHKKAEFMAANLTNEITSTDTLPEYIEEARKMGIP 849

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874
            + PP VN     F V D  I + L  IKG+G   AR I+E    + P+ S  DF  R+ S
Sbjct: 850  VDPPDVNRSDSIFDVIDGHIVFGLKGIKGMGEGAARAIVEEREKNGPYKSFVDFIERLSS 909

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            K +N++ +E L+  GA D  G +R  L  + + + +Y      ++     ++F       
Sbjct: 910  KDVNKKAIEVLIKTGAFDNLGQNRATLTMNFERVIEYEDKKNASKEYGQASLFEDAGIKE 969

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--- 991
             +    E+        R   E+ ++G + SGHPLD YK  +        E      +   
Sbjct: 970  FEDFKFEECEDLPKMERLNMEKELIGCFVSGHPLDDYKTAIETCATCNSENIERWAKIDK 1029

Query: 992  -------------------GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                               G       M+   +   T+KG ++ +   ++     +  FF
Sbjct: 1030 AEKASLESSGRSSWQSRNSGKTYIAIGMLQDLKIIMTKKGKQMAFAKLADYKGFIDVTFF 1089

Query: 1033 P 1033
            P
Sbjct: 1090 P 1090


>gi|332042050|gb|EGI78388.1| DNA polymerase III, alpha subunit [Hylemonella gracilis ATCC 19624]
          Length = 1178

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/1052 (40%), Positives = 607/1052 (57%), Gaps = 46/1052 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +PSF HL++H+ +S+++GA  +++++   A D QPA+AITD NNLF A++F + A   G
Sbjct: 2    STPSFAHLRLHTEFSVVDGATRVDDVVATAAKDGQPALAITDLNNLFGAIKFYKAARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++P+IG  + ++            T       ++LLV   +GY  L EL++R +  +  K
Sbjct: 62   VKPVIGADIVLE---------GLGTDPLATSRLLLLVQNKQGYLNLSELLARAWTGNVHK 112

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                + L+WL+E+  EGLI+L+G  +G + +A     +  A    L F  LF  R Y+ L
Sbjct: 113  AQAIVKLAWLKELH-EGLIVLSGAQTGAVGQALVQGDTARAHDLALQFATLFPHRFYLEL 171

Query: 187  QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR  R  D    +  VQLA   +LP+VAT+   FL+EEDYEAH+  + +A   ++    R
Sbjct: 172  QRAGRADDEVHVNAAVQLAARLKLPVVATHPVQFLTEEDYEAHEARVCIAEGEILGNPRR 231

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R  T + Y K+ ++M ++F+DLP AL NT+EI +RC+  L +  P LP F       + 
Sbjct: 232  VRKFTKEQYFKSAAQMQALFADLPSALANTLEIGKRCNLTLVLGKPQLPNFPIPGGLSM- 290

Query: 305  KEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               E+  R  ++ GLE     L      +      Y +RL+FE+N I +M F GYFLIV 
Sbjct: 291  ---EDYFRKVSLEGLEERLSHLYPEPAKRDAERPRYLERLEFEINTILKMGFPGYFLIVG 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFIQWAK N  PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFIQWAKANGCPVGPGRGSGAGSLVAYALKITDLDPLAYKLLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  RD VI YV+ +YG E V+QI TFG++ A+AA+RDVGR + M Y+  D + KLIPN
Sbjct: 408  FCQANRDRVIEYVKERYGREAVSQIATFGTMAARAAIRDVGRVMDMSYTFCDGISKLIPN 467

Query: 482  DPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   +++   I +     E +  +  V  LLE++QKLEG+ R+   HA G++I    L+
Sbjct: 468  KPGQHITIDGAIKEVPELAERQAKEDEVKNLLELAQKLEGMTRNVGMHAGGVLIAPGKLT 527

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVD 597
               P+Y+   SD  V+Q++   +E  GL+KFDFLGL TLT+L+ + +F+ +R        
Sbjct: 528  DFCPLYQQPGSDAAVSQYDKDDVEAVGLVKFDFLGLATLTILEIAREFIMKRHPGQEHFS 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               IP DD  TY L     T  +FQ ES GM+  L   +P  +ED+IAL +LYRPGP+D 
Sbjct: 588  FEAIPLDDKATYQLFQDGKTEAVFQFESRGMQGMLRDAKPTRLEDLIALNALYRPGPMDL 647

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+E+I   HPL+  ML ET G+++YQEQVMQ AQ+L GYSL  AD+LRRAM
Sbjct: 648  IPSFVARKHGREEIEYPHPLVADMLSETYGIMVYQEQVMQTAQILGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM + +E F  GA++NGI++  A  IF+L+ KFA YGFNKSHAAAY++++Y TA
Sbjct: 708  GKKKAEEMAQHREIFRKGAAQNGIAQDKADEIFDLMEKFAGYGFNKSHAAAYSLLAYHTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIY 836
            W+K HY  EF  A+MT+EMD+ +K+K   +DA++  +   PP VN     F+ V D  I 
Sbjct: 768  WLKVHYTAEFFCANMTVEMDDTDKLKVLFEDAQKMGMHFEPPDVNRGHYRFEPVSDTVIR 827

Query: 837  YSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKKLNRRVLESLV 886
            Y L A+KG G      I+ A              PF SL DFC RVD  ++N+R +E+L+
Sbjct: 828  YGLGAVKGTGQQAIEAIVAAREGRGEGPAGSECGPFKSLYDFCKRVDRARINKRTVEALI 887

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-------AHEKGTFSDKIT 939
             AGA D    +R +LL S D  + +              +F           G+ + +  
Sbjct: 888  KAGAFDSLHLNRAELLASTD--RAFDFAAATAANANQGGLFDLMADDGGDSHGSSTQEPE 945

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
            L +        R  +E+  +GFYFSGH  D     +R+   +   E + T       LA 
Sbjct: 946  LVEALPWGVKERLSHEKTAVGFYFSGHLFDEVAHEVRRFAKRELAELIDTREPQ--LLAG 1003

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +V   +    ++G R+      + +   +A  
Sbjct: 1004 IVSDLRVINGQRG-RLALFKLDDKSAVLDARV 1034


>gi|117926508|ref|YP_867125.1| DNA polymerase III subunit alpha [Magnetococcus sp. MC-1]
 gi|117610264|gb|ABK45719.1| DNA polymerase III, alpha subunit [Magnetococcus sp. MC-1]
          Length = 1195

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 439/1074 (40%), Positives = 631/1074 (58%), Gaps = 57/1074 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL +H+ YSLL   + L   +++  + Q PA+A+TD  NLF A++F      
Sbjct: 1    MP--ASFVHLHLHTGYSLLTSTVRLKQAIERAQSLQMPALALTDQGNLFGAIQFYSGCLK 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+P++G QL +      K     K        ++LL    EG++ L+ L+++ +L D 
Sbjct: 59   AGIKPLLGAQLYLVPDHTNKEERVDKEVRDQ---VILLCRNEEGWKNLMRLIAKGHL-DG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD---- 180
                 RI L  L++  + GL+ L+ G+ G + R         AE        +FGD    
Sbjct: 115  SHGLPRIDLPLLKQ-HSAGLLALSAGAKGAVGRLLAQERPAEAEAAAAELAAIFGDDGQM 173

Query: 181  -RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
               ++ LQRH    +     Q V LA    LP+VA+ +  ++  ED  A D L  V    
Sbjct: 174  PNFHLELQRHGEPGEERLIQQTVVLAQKLNLPIVASCDIHYMDPEDANARDALYCVGAVR 233

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
             + +++RPR++  +     +EM   F+DLPEALENT  IA RC+  L++  P+LP F   
Sbjct: 234  TLYEENRPRLSDRYAFATPAEMAERFADLPEALENTRRIAMRCNLQLKLGTPMLPDFALP 293

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQ------GAIAKGYHAQDYRQRLDFELNVIARMK 352
                  +  E E+R ++ AGLE RL++       A       Q Y  RL +EL +I +M 
Sbjct: 294  PG----QTLEGEMRTQSEAGLEERLSKYVLPRFPAAEHAELRQRYHDRLTYELGIINQMG 349

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFLIV+DFI+W K ++IPVGPGRGSGAGS+ A++L+ITD+DP+R++LLFERFLNP+R
Sbjct: 350  FPGYFLIVSDFIKWGKDHHIPVGPGRGSGAGSLVAWSLSITDLDPIRYTLLFERFLNPER 409

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPDFD+DFC DRR+EVI YVQ KYG +RVAQIITFG++QAKA +RDVGR L+ PY +V
Sbjct: 410  VSMPDFDVDFCMDRREEVIGYVQQKYGEDRVAQIITFGTMQAKAVIRDVGRVLEFPYGRV 469

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            D++ KL+PN     +  +A+  + R R+    +  V  L+ ++  LEG  R   THAAG+
Sbjct: 470  DKIAKLVPNVLGITLK-EALEQEPRLRDMMEDEEEVGHLINLALALEGSPRSCGTHAAGV 528

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            VI + PL+  VP+YRD RS +PVTQFNM  +EKAGL+KFDFLGLKTLT++  +L  +  R
Sbjct: 529  VISNGPLTDTVPLYRDPRSSMPVTQFNMGDVEKAGLVKFDFLGLKTLTVIDNTLKIVNAR 588

Query: 593  GVK----------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
              +          +D++ I  +D   + LL    T G+FQLESSGMR+ L+ + PD  ED
Sbjct: 589  RAQEGERAEDRVPIDIAAIDIEDERAFRLLMDGRTKGVFQLESSGMREILKKLAPDTFED 648

Query: 643  IIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            IIALV+LYRPGP+ + +   +  RK+G+  +    P ++P+L+ET GVI+YQEQVM+IAQ
Sbjct: 649  IIALVALYRPGPLGSGMVDDFIARKHGRAVVEYPLPQLEPILRETYGVILYQEQVMKIAQ 708

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            +L+GYSL  AD+LRRAMGKK  EEM KQ+  F+ GA    I    A  IF+L+ KFA YG
Sbjct: 709  VLAGYSLGAADLLRRAMGKKKPEEMAKQRSIFMDGAKAQQIDPEKAGYIFDLMEKFAGYG 768

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSH+AAYA+ISYQTAW+K HYPV F+AA+++ +++N +K+  F ++    ++Q++PP 
Sbjct: 769  FNKSHSAAYALISYQTAWLKAHYPVAFMAATLSADINNTDKVVNFVRECHDMSVQVLPPD 828

Query: 821  VNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874
            VN   V F V      ++ + + LAAIK VG      +++A  +  PF SL D C R + 
Sbjct: 829  VNRSAVIFSVQPGAGDEDAVRFGLAAIKNVGEAPMAALVKAREEGGPFASLLDLCQRTEG 888

Query: 875  KKLNRRVLESLVFAGALDCFG-YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
              LNRR LE+L+ AGA D  G  +R  LL +L          +K++     N+F  E+  
Sbjct: 889  GNLNRRTLENLIKAGACDGLGKGNRAALLSALPEALNRGTQHQKDQKLGFMNLFGDEEAE 948

Query: 934  FSDKI---TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
             S+      L +        R E E+  LGFY S HPL  Y+  +   G+    E     
Sbjct: 949  NSESTANWKLPEVPDWPEEERLEREKEALGFYISSHPLRKYEAEMHDYGLMSLSELREKY 1008

Query: 991  ----------RGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                       G  ++R   +VV ++  +T+KG R+ +VT  +   + E   FP
Sbjct: 1009 GPTSQEPMGNDGRVSVRFTGVVVERKLHRTKKGDRMLFVTLEDMLGQMEGVVFP 1062


>gi|325478762|gb|EGC81873.1| putative DNA polymerase III subunit alpha [Anaerococcus prevotii
            ACS-065-V-Col13]
          Length = 1150

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1052 (34%), Positives = 584/1052 (55%), Gaps = 48/1052 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G   +N +LDK       +IAITD   ++ A+EF ++A A GI+PI
Sbjct: 5    FTHLHVHTEYSLLDGFSRINVLLDKCKELGMNSIAITDHGEMYGAIEFYKQAVARGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +   D+       +        ++LL    +GY+ LI++VS  Y ++      R
Sbjct: 65   IGCEVYVSENDHTIKEPNNR----RYYHLILLAKNNDGYKNLIKIVSEAY-VNGFYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +   ++++     L+ L+   +G + +       + A++  + ++  FG    ++ LQ H
Sbjct: 120  VSFDYIKK-HANNLVALSACLNGEVSQRLIEGDYEAAKETAIKYESTFGKGNYFLELQNH 178

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++      + ++     +PLVATN+  ++++ED    DVL  +    +V  +DR ++
Sbjct: 179  GIKEQNTVNRGLDKIHRDLNIPLVATNDIHYVNKEDAYYQDVLQCIQTGKLVKDEDRMKM 238

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + + YLK+  EM  +FS    A+ENT  I+  C+     H P LP F +    +    +
Sbjct: 239  PSNEFYLKSYDEMNELFSSYEGAIENTQVISDMCNVSFTFHEPHLPYFSK---VEEGLTK 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+     GL           G   +D R+R + E+N+I  M +  YFLIV DF+++A
Sbjct: 296  LQYLKKLVDQGL-------VQKYGVITEDIRKRSEMEINIIHNMGYVDYFLIVWDFVRYA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            + ++I VGPGRGS AGS+ +YAL IT IDP+++ LLFERFLNP+R+SMPD DIDF    R
Sbjct: 349  RDHDIAVGPGRGSAAGSIVSYALDITQIDPIKYDLLFERFLNPERVSMPDIDIDFDYVLR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D+V+ YV + YG + V+QI+TFG +QA+ A+RDVGR L + Y++VD++ KLIP      +
Sbjct: 409  DKVVDYVNDLYGRDHVSQIVTFGRMQARNAIRDVGRVLDISYAKVDKIAKLIPTTIGMTI 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A     +F+E   +D    RL++ ++K+EGL RH S HAAG+VI   PL+ ++P+  
Sbjct: 469  D-KAFDASPKFKEMYDSDVESKRLIDTARKVEGLPRHTSIHAAGVVISKDPLTDIIPLAL 527

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDH 606
               +DL VTQF+M  IE+ GL+K DFLGL+ LT+++ ++ D    RG++VDLS I  +D 
Sbjct: 528  S--NDLVVTQFDMTEIEELGLLKMDFLGLRNLTVIKNTIKDVRKNRGIEVDLSKIDVNDK 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
                      T+GIFQ ES GMR  L+ ++P   +D+IA  SL+RPGP+D I  Y + KN
Sbjct: 586  NVIDQFNKARTIGIFQFESPGMRNFLKNLKPTVFDDLIAANSLFRPGPMDEIPNYIHNKN 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              + +  I P + P+L  T G+I+YQEQVMQI Q L+GYSL EAD LRRAM KK    M+
Sbjct: 646  NPKDVKFIDPALRPILDVTYGIIVYQEQVMQIVQQLAGYSLGEADNLRRAMSKKKMSVME 705

Query: 727  KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
              ++ FI             G  +NG+++  A  I++ +  FA Y FNKSH+AAY++++ 
Sbjct: 706  ANRDIFIHGKVDSDGNIEIPGCIRNGVNEKAANQIYDEMISFAKYAFNKSHSAAYSLVAV 765

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YP E++A  ++  MD+  K+  +  +++   I+++PP VN    +F V + +
Sbjct: 766  QTAYLKHYYPEEYMANLISSVMDSSSKLYLYVNESKSLGIEVLPPDVNKSLAEFTVEEGK 825

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV---DSKKLNRRVLESLVFAGA 890
            I + L+ IK VG  T + I+ +   D  F   +DF  R+   DS+ LN++ +ESL+ AGA
Sbjct: 826  IIFGLSGIKNVGVNTIKSIVASRKKDGSFIDFDDFLQRIYEFDSRSLNKKAVESLIKAGA 885

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKGTFSDKITLEKFSVENS 948
             D  G++R  L+   +          K       ++F    E      K   +     N 
Sbjct: 886  FDSLGHNRASLMAHYEKAMDAVHENRKVNVKGQIDMFGGFTENKEKKTKTKYDNIKEYNK 945

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGI--KGYEESVA-----TIRGNNIRLAAMV 1001
              + + E+ VLGFY S HPL  YK +L K       Y +++       +    + +A ++
Sbjct: 946  KTKLKLEKEVLGFYISDHPLSEYKDVLDKEVNFSTDYRDNMNDFQIQKLDRKFVTMAGVI 1005

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              K +  T+KG  + + +  +     E   FP
Sbjct: 1006 TEKSEIMTKKGQLMSFASLEDMYGTIEIVIFP 1037


>gi|313156974|gb|EFR56406.1| putative DNA polymerase III subunit alpha [Alistipes sp. HGB5]
          Length = 1218

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/1098 (31%), Positives = 560/1098 (51%), Gaps = 81/1098 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL VH+ YS+L+GA ++  ++ +  A    AIAITD  N++    F   A  AG++
Sbjct: 2    PDFVHLHVHTQYSILDGAAAIKPLIKRAKALGMNAIAITDHGNMYGVKNFHDTATDAGVK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+GC++ + +++  +     K        ++LL    EGY  L ++VS  +  +     
Sbjct: 62   PILGCEVYV-VKNRFEKDKDEKAGD----HLILLAKNLEGYHNLCKMVSYSFT-EGFYYK 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    +++   EGLI  +    G + +A   N  + AE+ +  FK +FG+  Y+ LQ 
Sbjct: 116  PRIDKQLIEQYH-EGLICCSACLGGEVPQAIMHNDIEEAERVVQWFKNIFGEDYYLELQL 174

Query: 189  HRGYDRY-----------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            H   D                 +++LA  + +  + +N+  F+  ED  AHD L+ +   
Sbjct: 175  HPSGDPQKDADVYENQLRVNKVILELAAKYGVKYICSNDVHFILAEDAVAHDHLICLNTG 234

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
              +   +R R T   YLK+  EM ++F D PEAL  T+EIA +C      HAP++P F  
Sbjct: 235  RDLDDPNRMRYTFQEYLKSPEEMAALFPDHPEALATTLEIADKCEDYKLTHAPLMPNFPP 294

Query: 298  KECDDIQKEE---------------------------------ENELRNKAVAGLEVRLA 324
             E   I   E                                 + EL ++ +   +    
Sbjct: 295  PEDFPIALGELRESFVKKIEDEEMLAKIGACATVPELEELVAGDKELSDRLMVAKQYCYL 354

Query: 325  QGAIAKGYH-------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
            +    KG H        +   +R+ +EL+ I  M F GYFLIV D+I+ A++  + VGPG
Sbjct: 355  KDLTYKGAHMRYGDVLDEKTEERIKYELSTIEWMGFPGYFLIVWDYIRAAREMGVSVGPG 414

Query: 378  RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
            RGS AGSV AY L IT+IDPL++ LLFERFLNP+R+S+PD D+DF +D R +V+RY   K
Sbjct: 415  RGSAAGSVVAYCLKITNIDPLKYDLLFERFLNPERISLPDVDVDFDEDGRADVLRYCVQK 474

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND------PAHPVSLQA 491
            YG +RVAQI+TFG++  K A++DV R  ++  S+ DRL KL+P+                
Sbjct: 475  YGQKRVAQIVTFGTMAPKMAIKDVARVQKLALSESDRLSKLVPDKVTPDKKHGETPFDFV 534

Query: 492  IADDSRFREARLADPS-VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
              +       R +    +   L+ ++KLEG  R    HA G++IG   L +  PM     
Sbjct: 535  YKESPELAAERESPNQLIRNTLKYAEKLEGSIRQTGVHACGVIIGQDDLEKFAPMAIAKD 594

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
            ++L V +F  K +E  GLIK DFLGL+TL++++ +++ +    GV VD+  I  DD  TY
Sbjct: 595  AELNVVEFEGKEVESVGLIKMDFLGLRTLSIIKDAVENVKAVHGVDVDIDGISLDDAPTY 654

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             +     T G+FQ ES GM++ L  ++P+  ED+IA+ +LYRPGP++ I  +  RK+G+E
Sbjct: 655  EVFARGDTTGLFQFESPGMKKHLRNLKPNRFEDLIAMNALYRPGPMEYIPNFIARKHGQE 714

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +      ++  L +T G+ +YQEQVM ++Q L+G++  EAD LR+AMGKK ++ +DK K
Sbjct: 715  PVTYEIADMEEYLNDTYGITVYQEQVMLLSQKLAGFTGGEADTLRKAMGKKKRDVLDKMK 774

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FI G  + G  + I   I+     FA Y FNKSH+  YA ++YQT ++K HYP EF+A
Sbjct: 775  PKFIEGCKQRGHDEKICDKIWGDWEAFASYAFNKSHSTCYAYVAYQTGYLKAHYPSEFMA 834

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTT 848
            A ++  + +++++  +  + ++  I+++ P +N     F       + + L A+KGVG  
Sbjct: 835  ALLSRNLADIKQLTLYMNECKRMGIRVLGPDINESMRTFSSNKAGDVRFGLGAVKGVGEA 894

Query: 849  TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-- 904
                I+    A+  F  + D   RV+   +NR+  E+L +AG  D   G+ R +   +  
Sbjct: 895  AVESIIAERNANGRFKDIYDLMERVNFSAVNRKCFENLAYAGGFDSISGFHRGKFFGADA 954

Query: 905  --------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
                    ++ + +Y Q  +  + N  +++F         +  L   +  +       E+
Sbjct: 955  RDNTGVTFIEQLMRYGQRFQAEKNNAQQSLFGGGGHVDIQRPVLPACADWSQLETLAKER 1014

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSR 1014
             ++G Y S HPLD YK I+  M      E       +G  I +A MVVS Q   T+ G  
Sbjct: 1015 EMIGHYLSAHPLDDYKIIINHMCKTQLTELENLEALKGQEIAVAGMVVSVQNLITKTGKP 1074

Query: 1015 IGWVTFSEPAKEYEANFF 1032
             G     +    +E   F
Sbjct: 1075 WGKFVLEDYNGTHEFALF 1092


>gi|149919879|ref|ZP_01908355.1| DNA polymerase III, alpha subunit [Plesiocystis pacifica SIR-1]
 gi|149819326|gb|EDM78759.1| DNA polymerase III, alpha subunit [Plesiocystis pacifica SIR-1]
          Length = 1255

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/1126 (35%), Positives = 595/1126 (52%), Gaps = 107/1126 (9%)

Query: 1    LTQYLEKSP----SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL 56
            ++  +         F HL +H+ YSLL+GA+ +N++  K+      ++A+TD  N+F A+
Sbjct: 1    MSTDMTGDAAGVDDFAHLHLHTQYSLLDGAIRMNDLCGKVKERGMKSVAMTDHGNMFGAV 60

Query: 57   EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            +F Q+A A G++PI GC+  I   D    T++          IVLL     GYQ L  LV
Sbjct: 61   QFYQQAKAHGVKPIFGCEAYIADGDAPAKTDR------KNYHIVLLAKNEVGYQNLQRLV 114

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S  +L +    + RI    L+E  +EGL+ L+    G I R         A +R+  +  
Sbjct: 115  SYGHL-EGFYYNPRIDRKTLRE-HSEGLVGLSACLGGHISRMITGGDMDGARERIREYAD 172

Query: 177  LF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            +F     ++ LQ +         + + QL    ++P+VATN+  ++++ +  AH+VLM +
Sbjct: 173  IFEPGSYFLELQPNGMELQEKVNADLAQLGRDLDVPIVATNDCHYVNQSEAYAHEVLMCM 232

Query: 235  AHSTVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
                 ++ + R +    + ++K   +M   F   PEA+ N   IAR C+  L +  P LP
Sbjct: 233  GMGRTINDEKRLKHDCEEFFIKTPQQMWGYFERYPEAMHNAARIARMCNVELSLGKPELP 292

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQG-AIAKGYHAQDYRQRLDFELNVIARMK 352
             F   E  D    E   LR  A  GL+ R+ +  A+ K      Y +RL+ EL +I  MK
Sbjct: 293  DFKLPEGTD----EVEYLRKVAREGLDQRIRELRALGKAPDTDVYFERLERELGIIINMK 348

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFLIV DFI+ AKK  +PVGPGRGSGAGS+ AY++ ITDIDP+++ LLFERFLNP+R
Sbjct: 349  FPGYFLIVWDFIKEAKKMGVPVGPGRGSGAGSLVAYSMRITDIDPMQYDLLFERFLNPER 408

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPDFDIDFC DRR+EVI+YV + YG +RV QI TF SL+A+  LRDV R ++   ++ 
Sbjct: 409  VSMPDFDIDFCMDRREEVIQYVTDHYGKKRVGQIATFHSLKARGLLRDVCRVMEKLPAEA 468

Query: 473  DRLCKLIPNDPAHPVSLQA---------IADDSR-----------------FREARLADP 506
            + L K++P  P   +SL           +  +                    R    ADP
Sbjct: 469  NELAKMVPEGPKVSLSLCMADPKAIRAKMKKEPEKAGKLEGKLQIAEAATKLRLRCEADP 528

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
             V ++++I   LEGL RHA  HAAGIVIG+R L++ VP ++    D  VTQ+ M  +E+A
Sbjct: 529  GVKQIVDIGCSLEGLNRHAGMHAAGIVIGNRELTEHVPCFKA--DDKIVTQYTMNDVEQA 586

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL--------------IPFDDHETYHLL 612
            GL+KFDFLGLKTLT+++ ++D +        L                IP DD E Y ++
Sbjct: 587  GLVKFDFLGLKTLTVIKHAVDQINGLEGPWRLDPTQQGTADKPFDIDTIPMDDAEVYAMI 646

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN--RKNGKEK 670
            +   T G+FQLES+G ++ L+ ++PD  EDIIA V+LYRPGP++  +V      K+G+ K
Sbjct: 647  SRGETTGVFQLESTGFKKLLQKLKPDVFEDIIAAVALYRPGPLEGGMVDQFIECKHGRRK 706

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            I   H L+  +L+ET GV +YQEQVM  AQ+L+G+SL  AD++RRAMGKK  +EM++Q+ 
Sbjct: 707  IEYPHELLADVLRETYGVFVYQEQVMLAAQILAGFSLGGADLMRRAMGKKKVKEMERQRA 766

Query: 731  RFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             F+ G    N I    A  IF+L+ KFA YGFNKSH+AAY +I+YQTA++K HYP  F+ 
Sbjct: 767  LFVEGCESVNNIDAKKANEIFDLIDKFAGYGFNKSHSAAYGLITYQTAYLKHHYPEAFMC 826

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------------------- 830
              MT + D  E + KF  +AR  +I ++PP VN    DF V                   
Sbjct: 827  GLMTCDKDKSENVVKFIAEARSMDITVLPPDVNESASDFNVVVRDRPELSEEELKKKKQL 886

Query: 831  ------------------GDN--RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFC 869
                                    I + + A++ VG      I+ A   + PF ++ + C
Sbjct: 887  ARKSKKVRRRQAREDSRPEGKLLAIRFGMGAVRNVGGNAVDSILAAREEEGPFKNIFELC 946

Query: 870  SRVDSKKLNRRVLESLVFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
             RVD K++N+R LE LV +GA D    G  R  ++ ++++  +  Q  +++R +    +F
Sbjct: 947  RRVDLKRVNKRTLEGLVHSGAFDSVSEGQHRAGVVAAIESAVEQGQSSQRDRESGQGGLF 1006

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                          K        R  NE+  LGFY +GHPLD Y+  + +       E  
Sbjct: 1007 DAFSSDQVYVEEYPKVREWAPKQRLLNERDALGFYLTGHPLDRYQQDIDRHASVRIGELR 1066

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + G  + L  ++   +Q  T+ G  +G+    +     E   FP
Sbjct: 1067 KELAGQEVVLGGVITEMRQVTTKAGKTMGFFQLEDQFGRVEVIVFP 1112


>gi|310779267|ref|YP_003967600.1| DNA polymerase III catalytic subunit, DnaE type [Ilyobacter
            polytropus DSM 2926]
 gi|309748590|gb|ADO83252.1| DNA polymerase III catalytic subunit, DnaE type [Ilyobacter
            polytropus DSM 2926]
          Length = 1138

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1038 (37%), Positives = 607/1038 (58%), Gaps = 34/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++ +  FVHL +H+ YSLL+G   ++  LD+       ++AITD  N+F A+EF +KA +
Sbjct: 1    MKNN--FVHLHLHTEYSLLDGVGKIDEYLDRAKKLGMRSMAITDHGNMFGAVEFYKKALS 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI+G +  +      + + +          +VLL     GY+ L++L S  YL   
Sbjct: 59   KGIKPIVGMEAYLSEFSMEEKSGRN-------FHLVLLAKNETGYKNLMKLSSEAYLK-G 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF-FNSSQVAEKRLLTFKKLFG-DRL 182
                 RI    L +  ++G+I L+    G + +      S +  +K +  + ++FG +  
Sbjct: 111  FYYRPRIDKEILAQ-HSKGIIALSACMQGELSKRILDEESEEDLDKAVNEYVEIFGKEDF 169

Query: 183  YVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            YV LQ +           +  LA  H+L +VATN++ ++   D+   D+L+ V   + +S
Sbjct: 170  YVELQSNGIKKQEKLNDALYTLAKKHDLKVVATNDTHYVYYGDHTLQDILICVQTGSKIS 229

Query: 242  QKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             + R ++ T   +LK+R +M+        A++NTVEIA +C+  L+      P +    C
Sbjct: 230  DEKRMKIETDQLFLKSREQMLEELGKYDRAVDNTVEIADKCNLELEFGVFKFPEYKIPTC 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D  +     LR     GL+ R            +D  +R+++EL+VI +M ++GYF++V
Sbjct: 290  VDSIR---EFLRKLVYQGLKRRYKNDL------EKDVIERVEYELDVINKMDYAGYFVVV 340

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI +AKKN IPVGPGRGS AGS+ AY+L IT++DP++++L+FERFLNP+R+SMPD DI
Sbjct: 341  WDFIDYAKKNRIPVGPGRGSAAGSMVAYSLGITELDPMKYNLIFERFLNPERISMPDIDI 400

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D CQ+RR EVI YV  KYG +RVAQIITFG+++A+AA+RDVGR + +P  +VD++ KLIP
Sbjct: 401  DICQERRQEVIDYVGEKYGKDRVAQIITFGTMKARAAIRDVGRVMNVPLFKVDKIAKLIP 460

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
               +     +A+ +    RE    D     L+E S++LE   RHAS HAAG+VI   PL+
Sbjct: 461  PFFS---LDRALKEVEELREVYETDSESQELIEYSKRLENTVRHASIHAAGVVITKDPLT 517

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
              VP+Y D ++ +  TQ+ MK +E+ GL+K DFLGL+ LT+LQ+++D++ +    ++DL+
Sbjct: 518  DDVPLYSDTKTKVVSTQYQMKELEELGLLKMDFLGLRNLTILQRTVDYIREDTNEEIDLN 577

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP D  E Y LL    TLG+FQLES G+R+ L  ++PD  EDIIA+++LYRPGP+ + +
Sbjct: 578  KIPLDSLEVYRLLQKGDTLGVFQLESHGIRKLLMKLKPDRFEDIIAVLALYRPGPLGSGM 637

Query: 660  --VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
               +   KNG+  I   H  ++ +LKET GVI+YQEQVM+IA +++ Y+L EAD+LRRAM
Sbjct: 638  VDDFIEVKNGRAAIKYPHQSLEDVLKETYGVILYQEQVMKIANIMADYTLGEADLLRRAM 697

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK    M++ + +F+  A K G S+  A  IF L+ KFA YGFNKSH+AAYA+++Y TA
Sbjct: 698  GKKNMAIMEENRNKFVKRAVKKGYSEEKATEIFNLIDKFAGYGFNKSHSAAYALVAYWTA 757

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            + K  YP  + AA MT E +N+EK+  + +DA++  I +  P++N     F V  + + +
Sbjct: 758  YFKGCYPKHYYAALMTSERNNIEKLAVYVEDAKEHGIGVALPNINKISTRFIVDGDLVRF 817

Query: 838  SLAAIKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             ++AIK VG T    I  E + +  + + E+F +R   + +N++ LE+L+ +GALD    
Sbjct: 818  GMSAIKNVGETLIERIKAEHARNGDYTTFENFVTRGKKEGVNKKALEALILSGALDSIPG 877

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R Q  +S++    YA  V K    +  N+F   + T   K  +              E+
Sbjct: 878  NRRQKYESMEKALNYATKVMKEDDIQQMNLFGEARATIE-KFQMPSVEEYKMENLLTGEK 936

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRI 1015
              LGFYF+GHPLD Y+ +L+   +   ++ V+ +   +I+   MV + ++  T+K G  +
Sbjct: 937  EFLGFYFTGHPLDKYRQMLKVYRLTEIKDIVSDMP-VHIKTYGMVRNLKKVITKKSGQVM 995

Query: 1016 GWVTFSEPAKEYEANFFP 1033
            G     +      A  FP
Sbjct: 996  GVFDLEDYYGRIGAVVFP 1013


>gi|297243791|ref|ZP_06927721.1| DNA polymerase III, alpha subunit [Gardnerella vaginalis AMD]
 gi|296888212|gb|EFH26954.1| DNA polymerase III, alpha subunit [Gardnerella vaginalis AMD]
          Length = 1188

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/1074 (32%), Positives = 547/1074 (50%), Gaps = 56/1074 (5%)

Query: 5    LEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            + +  + FVHL  H+ YSLL+GA  + +++ +      PA+AITD  N+  A E    A 
Sbjct: 1    MTQPETNFVHLHNHTHYSLLDGASKIPDLVARAKELGMPAVAITDHGNMHGAYEMWSTAV 60

Query: 64   AAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
             AGI+PIIG +  +  +                     +    +  + L      G   L
Sbjct: 61   KAGIKPIIGIEAYVTPETARQDKSRVHWGTEDQRADDVSGGGLITHMTLWAENDTGLTNL 120

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
            ++  S   L  +  +  R+    L    ++G+I  +G  SG I         + A +   
Sbjct: 121  LKASSVANLEGRVMRYPRMDKDVLSTY-SKGVIASSGCPSGIIQTRLRLGQFKEALRAAG 179

Query: 173  TFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             F+ +FG D  ++ L  H    +      ++++A     PL+ATN+  ++ EED EA D 
Sbjct: 180  EFQDIFGRDNFFIELMNHGLSIETRVTKDLLEIAKKLNAPLLATNDLHYVHEEDREAQDA 239

Query: 231  LMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
            ++ +   + +   DR +     +YLK+  +M  +F + PEA +NT+EIARRC+ +     
Sbjct: 240  MLCINSGSRLDDPDRFKFDGSGYYLKSAEQMRELFKEFPEACDNTLEIARRCNVMFDDGE 299

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                       +    +E +    K   GLE R             +  ++ D+E  VI 
Sbjct: 300  DGAFMPQFDCPEG--WDETSLFLKKVEEGLERRYNNN------IPMEVLKQADYECGVIC 351

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++  L+FERFLN
Sbjct: 352  QMQFCGYFLVVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPMKHGLIFERFLN 411

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+S+PD D+DF  D R +V+ YV  KYG ++VAQ + +G+++ K AL+D  R +   +
Sbjct: 412  PERVSLPDIDVDFDPDGRAKVLEYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGYEF 471

Query: 470  SQVDRLCK-LIPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEG 520
            S  +++ K L P      +SL  I D+          FRE    DP   R+ E ++ +EG
Sbjct: 472  SVGEKITKVLPPAKNGKDMSLHDIFDEKSKRYAEAREFREMYDTDPDTHRITEEAKGIEG 531

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R    HA   ++G  P++   P+  +       T F     E  GL+K DFLGL  LT
Sbjct: 532  LIRQTGVHACATIMGSEPITNTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLT 590

Query: 581  LLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            +++ +L  +       +D + IP DD  TY LL+   TLG+FQL+S GMR  L  ++PD 
Sbjct: 591  VIRDTLRNIENNGKDPIDYTKIPLDDKATYQLLSRGDTLGVFQLDSDGMRALLRTLKPDN 650

Query: 640  IEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQE 693
              DI AL++LYRPGP+D      Y  RKNG + I+ IHP     +  +L ET G+I+YQE
Sbjct: 651  FNDISALIALYRPGPMDMDSHTNYAKRKNGLQDIIPIHPEVAEPLKEVLDETYGLIVYQE 710

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QV   A++L+GYSL +ADVLRRAMGKK  E + K++  F  G   +G S+  A  ++++L
Sbjct: 711  QVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEQVPFFEGMKAHGYSEEAAQAVWDVL 770

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +  E  N +K   +  +AR+  
Sbjct: 771  VPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQNERTNKDKTALYLGEARRMG 830

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSR 871
            IQ++ P VN   +++    + + + L AI+ VG      I+         F +  DF  R
Sbjct: 831  IQVLQPDVNESVLEYSAVGDVVRFGLGAIRNVGDKAVNDIITEREGERGRFVNFMDFVQR 890

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--- 928
            V    LNRR++ESL+ AGA D    +R  L Q  D        +++ +     ++FA   
Sbjct: 891  VPISALNRRLVESLIKAGAFDSIDSNRRALFQICDPAIDSVIALKRKQAEGQFDLFADLD 950

Query: 929  ------HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
                   + G    +IT+      +   +   E+ +LG Y S HPL     +L  +    
Sbjct: 951  SSSDSDDDNGMGDMQITVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGLSAVLADLREMS 1010

Query: 983  YEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + +        G  + +A +V S  ++ +RKG+    VT  +     +  FF
Sbjct: 1011 IAQLIDRARTMSDGQQVTIAGLVTSVDRRVSRKGNAWAIVTVEDMESSIQCMFF 1064


>gi|171742474|ref|ZP_02918281.1| hypothetical protein BIFDEN_01586 [Bifidobacterium dentium ATCC
            27678]
 gi|306822385|ref|ZP_07455764.1| DNA-directed DNA polymerase III alpha subunit [Bifidobacterium
            dentium ATCC 27679]
 gi|309802136|ref|ZP_07696245.1| putative DNA polymerase III subunit alpha [Bifidobacterium dentium
            JCVIHMP022]
 gi|171278088|gb|EDT45749.1| hypothetical protein BIFDEN_01586 [Bifidobacterium dentium ATCC
            27678]
 gi|304554383|gb|EFM42291.1| DNA-directed DNA polymerase III alpha subunit [Bifidobacterium
            dentium ATCC 27679]
 gi|308221216|gb|EFO77519.1| putative DNA polymerase III subunit alpha [Bifidobacterium dentium
            JCVIHMP022]
          Length = 1195

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/1081 (31%), Positives = 546/1081 (50%), Gaps = 63/1081 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S +FV L  H+ YSLL+GA  + +++ +      PA+ ITD  N+  A E    A  
Sbjct: 1    MATSGNFVQLHNHTHYSLLDGASKIPDLVKRAKELNMPAVGITDHGNMHGAYEMWSTAVN 60

Query: 65   AGIQPIIGCQLDIDMQ---------------------DNLKMTNQGKTPFPTVPSIVLLV 103
            AGI+PIIG +  +  +                     ++ K      +    +  + +  
Sbjct: 61   AGIKPIIGIEAYVTPETARQDPTRVSWDTNWNPDLDPNHRKRNPNDVSGGGLITHLTMWA 120

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
             T EG   L++  +   L  +  +  R+    L +  ++G+I  +G  SG I        
Sbjct: 121  ETDEGLVNLMKASTDANLEGRVMRYPRMDKEILSKY-SKGIIASSGCPSGIIQTRLLLGQ 179

Query: 164  SQVAEKRLLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLS 221
               A +     + +FG D  Y+    H    +R     ++ +A     PL+ATN+S ++ 
Sbjct: 180  FDEALRAAGELQDIFGRDNFYIEFMDHGLNIERQVTDGLLDIAKKLNAPLLATNDSHYVR 239

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
             ED  A D ++ +   + + +  R +     +YLK+  EM  +F DLPEA +NT+EIA R
Sbjct: 240  AEDAGAQDAMLCINSGSTLDEPGRFKFDGTGYYLKSAEEMRELFKDLPEACDNTLEIAER 299

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
            C+ +   H            +    +E +    K   GLE R        G    +  ++
Sbjct: 300  CNVMFDDHEDGAFMPQFDCPEG--WDETSLFLKKVEEGLEKRY------DGNPPIEVLKQ 351

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
             D+E  VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++ 
Sbjct: 352  ADYECGVICQMQFCGYFLVVADYINWAKTHGVMVGPGRGSAAGAMVAYAMGITELDPIQH 411

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             L+FERFLNP+R+S+PD D+DF  D R  V+ YV  KYG ++VAQ + +G+++ K AL+D
Sbjct: 412  GLIFERFLNPERVSLPDIDVDFDPDGRGRVLDYVGEKYGRDKVAQCVIYGTIKTKQALKD 471

Query: 461  VGRALQMPYSQVDRLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDR 510
              R +   +S  +R+ K +P        + L  I D +         FRE   +DP   R
Sbjct: 472  SARIMGFDFSMGERVTKALPPAQTGGKDIPLHDIFDPASKRYAEAREFRELYDSDPDAKR 531

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            + + +  +EGL R    HA   ++G  P++   P+  +       T       E  GL+K
Sbjct: 532  VTDEAMGIEGLIRQTGVHACATIMGSEPITNTSPL-LERTDGTVTTTLEYHTCETLGLVK 590

Query: 571  FDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             DFLGL  LT+++ +L+ +      ++D + IP DD  TY LL+   TLG+FQL+S GMR
Sbjct: 591  MDFLGLSNLTVIRDTLNNIEANGKDRIDHTRIPLDDKATYELLSRGDTLGVFQLDSDGMR 650

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLK 683
              L+ ++P    DI AL++LYRPGP+D      Y  RKNG +KI  IHP     +  +L 
Sbjct: 651  SLLKTLKPSNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKEVLD 710

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+I+YQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+
Sbjct: 711  ETYGLIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFAGMKEHGYSQ 770

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
              A  ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K  
Sbjct: 771  EAAQAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKDKTA 830

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA--DKP 861
             +  +AR+  IQ++ P VN    ++    + + + L AI+ VG      I++        
Sbjct: 831  LYLGEARRMGIQVLSPDVNESVFEYSAVGDVVRFGLGAIRNVGRNAVDDIIKERESGHGK 890

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + +  DF  RV    LNRR++ESL+ AGA D    +R  L    +        +++ +  
Sbjct: 891  YVNFPDFVRRVPLSALNRRLVESLIKAGAFDSVDPNRRALFTIHEAAINSVVGIKRKQAE 950

Query: 922  KHENIFAHEKGTFSDK------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
               ++F+    +          +++      +   +   E+ +LG Y S HPL   + +L
Sbjct: 951  GQFDLFSDLDDSAEQDGMGDAMVSVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQSVL 1010

Query: 976  RKMGIKGYEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
              +        +        G  + +A ++ +  ++ ++KG+    VT  +     +  F
Sbjct: 1011 SSLREMSIAHLIDRAGTMPDGQQVTVAGLITNVDRRVSKKGNPWAIVTIEDLESSIQCMF 1070

Query: 1032 F 1032
            F
Sbjct: 1071 F 1071


>gi|282599926|ref|ZP_05972365.2| DNA polymerase III, alpha subunit [Providencia rustigianii DSM 4541]
 gi|282567163|gb|EFB72698.1| DNA polymerase III, alpha subunit [Providencia rustigianii DSM 4541]
          Length = 1144

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1032 (39%), Positives = 595/1032 (57%), Gaps = 38/1032 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G      ++ K+A    PA+AITD  NL   ++F   A +AG++PIIG    ++   
Sbjct: 1    MIDGLAKTGPLVKKVAEMGMPALAITDFTNLCGLVKFYGAAHSAGVKPIIGADFYME--- 57

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                    +     V  + +L    EGYQ L  L+S  Y    G     I   WL +   
Sbjct: 58   -------SEQLGDDVAHLTVLARNNEGYQNLTLLISEAYQKGYGAIGPTIHRDWLVK-HK 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            EGLI+L+GG  G + +     +  + ++ +  ++  F    Y+ L R    D        
Sbjct: 110  EGLILLSGGRKGDVGQFLLRGNQALVDECIEFYETHFPGSYYLELIRTGRPDEESYLHAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            ++LA    LP+VATN   F+   D++AH++ +A+     +    RP+  +P  YL++  E
Sbjct: 170  IELATLRGLPVVATNEVCFIESRDFDAHEIRVAIHDGFTLVDPKRPKNYSPQQYLRSEEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+D+PEALEN+VEIA+RC+  +++           +      E E+ L   +  GL
Sbjct: 230  MCELFADIPEALENSVEIAKRCNVTIRLGEYF-----LPKFPTGDMETEDYLVMCSKKGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +     +Y +RLD ELNVI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285  EERLEFLFPDEKERAVKRIEYDERLDIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL   LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V  
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLELDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAQ 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLE-KAFEVEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D   + PVT
Sbjct: 464  QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL-----IPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  K +L       IP +D +++ +
Sbjct: 524  QFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKKNLEPIDIAAIPLEDKKSFDM 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
            L    T  +FQLES GM+  ++ +QPD  ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584  LQRSETTAVFQLESRGMKDLIKRLQPDSFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670  KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDVKWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+  F  GA KNGI   +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704  MAKQRSVFKDGAIKNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA MT +MDN EK+     +  +  ++++PP +N+    F V D   I Y + AIK
Sbjct: 764  AEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIK 823

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA      F  + D C+RVD KK+NRRV+E L+ AGA D  G  R  L+
Sbjct: 824  GVGEGPIEAIIEARQQGGIFKEIFDLCARVDIKKINRRVMEKLIMAGAFDHLGPHRAALM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             SL++  K A    K       ++F    +     + +          V  E E+  LG 
Sbjct: 884  SSLEDALKAADQHAKAEAIGQGDMFGVLAEAPEQVESSYASVPKWPEQVVLEGERETLGL 943

Query: 962  YFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y +GHP+  Y   + +       ++   T RG    +  +V+S +   T++G+RIG  T 
Sbjct: 944  YLTGHPITRYLSEIERYTNGLRLKDVNPTPRGQVTTVVGLVLSAKVITTKRGNRIGICTL 1003

Query: 1021 SEPAKEYEANFF 1032
             + +   +   F
Sbjct: 1004 DDRSGRLDIMLF 1015


>gi|114327944|ref|YP_745101.1| DNA polymerase III subunit alpha [Granulibacter bethesdensis CGDNIH1]
 gi|114316118|gb|ABI62178.1| DNA polymerase III alpha subunit [Granulibacter bethesdensis CGDNIH1]
          Length = 1143

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 490/1038 (47%), Positives = 653/1038 (62%), Gaps = 27/1038 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  + +FVHL+VHS+YSL EGA+  + I         PA+A+TD+ NLF  LEFSQ    
Sbjct: 1    MAHA-NFVHLRVHSAYSLSEGAIKTDKIPALARQMAMPAVAMTDSGNLFGILEFSQACAG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPIIGCQ+ +   +  +              +VLL     G   +  L S  +L  +
Sbjct: 60   KGVQPIIGCQIGLARPEQQQRLPPD--------QLVLLARDEAGLANIQRLSSLGFLQGE 111

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 ++ L  +     EG+++LTGG+SGP+ R         AE+ L   K+ F DR  +
Sbjct: 112  PGAKPQLPLETILA-HAEGVMLLTGGTSGPLARLLAEGQKGEAERLLAVLKEAFPDRTVI 170

Query: 185  NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L RH    ++  E  ++ LA    LPLVATN+  F   + YEAHD L+ +A   V+S+ 
Sbjct: 171  ELHRHGLRLEKAIEPGLIALADAAGLPLVATNDCYFAQPDMYEAHDALLCIAEGRVLSET 230

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR RVTPDH+ K    M ++FSDLPEA +NT+ IAR C  + +   P+LP   +      
Sbjct: 231  DRRRVTPDHWFKPPEMMRALFSDLPEACDNTIAIARSCVVMAETRKPLLPVCPKVH---E 287

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             + E+  +R  AV GLE R+ +   A       YR+RLD+EL+VIARM F GYFLIVADF
Sbjct: 288  GQTEDETVRAMAVEGLERRM-EDVGAGPEDRARYRERLDYELDVIARMGFPGYFLIVADF 346

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK N+IPVGPGRGSGAGSV A+ALTITD+DPLRF+LLFERFLNPDR+SMPDFDIDFC
Sbjct: 347  IQWAKANDIPVGPGRGSGAGSVVAWALTITDLDPLRFNLLFERFLNPDRISMPDFDIDFC 406

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QDRRDEVI YV+ +YG +RVAQIITFG LQAKAA+RDVGR L MP+ QV+++ +LIPN+P
Sbjct: 407  QDRRDEVISYVRGEYGGDRVAQIITFGKLQAKAAVRDVGRVLGMPFGQVNKVAELIPNNP 466

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A P +  +AI  + R ++ R +D +V RLLEI+ ++EGLYRHASTHAAG+VIGDRPL +L
Sbjct: 467  AKPPTLQEAIDGEPRLQQMRESDEAVKRLLEIALQIEGLYRHASTHAAGVVIGDRPLVEL 526

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD +SD  VTQF+MK +E AGL+KFDFLGL TLT+LQ+++ FLA  GV VDL+ +P
Sbjct: 527  VPLYRDPKSDFLVTQFSMKHVENAGLVKFDFLGLTTLTILQRAVKFLAGLGVSVDLAHVP 586

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  TY +L      G+FQ ES GMR  L  M+PD  ED+IA V+LYRPGP+ NI  Y 
Sbjct: 587  LDDERTYQMLQRGDAGGVFQFESQGMRDVLRQMRPDRFEDLIAAVALYRPGPMANIPAYC 646

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G E     H  I  +L ET G+++YQEQVMQIAQ L+GYSL  AD LRRAMGKKI+
Sbjct: 647  QRKHG-EAWEPPHEDIRDILGETYGIMVYQEQVMQIAQKLAGYSLGAADSLRRAMGKKIR 705

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EM+  +  F  GASK GI    +  IF+L+ KFADYGFNKSHAAAYA+++YQTA+MK +
Sbjct: 706  AEMETHRSIFAEGASKRGIPDAKSGEIFDLMVKFADYGFNKSHAAAYALVAYQTAYMKAN 765

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYY 837
            YP  FLAA M+L ++N +K+    Q+A +  I ++PP +N    DF+V         I Y
Sbjct: 766  YPEPFLAACMSLAINNTDKLAALRQEATRLGISVLPPDINCSAADFRVEQREDGRLAIRY 825

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            +LAAIK VG +    ++ A  ++ F  L DF +RVD ++LNR  +E+L  AGA D    +
Sbjct: 826  ALAAIKRVGLSAMEAVVAARGEQAFTDLADFAARVDPRQLNRMQIENLARAGAFDSLVPN 885

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  +  + D I + AQ   + + +    +FA       + + L          R   E  
Sbjct: 886  RAAVHGAADMILRRAQAASEEKNSGQIGLFAG--AGTPEPLRLPSCPDWPDMERLSFEAE 943

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRG-NNIRLAAMVVSKQQKKTRKGSR 1014
             +GF+ + HPLDVY   L+K+ +             G   +RLA  VV+ +++ TR GSR
Sbjct: 944  AIGFHLTAHPLDVYTVTLQKLRVLPSNRIEEHAARHGDQRVRLAGCVVNAKERTTRTGSR 1003

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + WV  S+    YE   F
Sbjct: 1004 MAWVRLSDAGGSYEITVF 1021


>gi|313677443|ref|YP_004055439.1| DNA polymerase iii, alpha subunit [Marivirga tractuosa DSM 4126]
 gi|312944141|gb|ADR23331.1| DNA polymerase III, alpha subunit [Marivirga tractuosa DSM 4126]
          Length = 1433

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/1075 (32%), Positives = 556/1075 (51%), Gaps = 68/1075 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ +S+L+    + ++++K      PAIA+TD  N+  A  F + A  AGI+PI
Sbjct: 246  FVHLHCHTQFSILQSTTEIPSMVNKAKEMGMPAIAMTDHGNMMGAYNFVRDANKAGIKPI 305

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+     QD        K         VLL     GY  L +L S  + ++      R
Sbjct: 306  VGCE-YFLTQDR-----NNKKNKDDGFQTVLLAKNKAGYHNLAKLSSIAF-VEGFYYVPR 358

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L +   E +I  TGG  G +           AE+  L +K+ FGD  YV L +H 
Sbjct: 359  IDREALVQY-KENIIATTGGLWGEVPFLILNAGEAQAEEAFLWWKEQFGDDFYVELNQHG 417

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-- 247
               ++     +++ A  +++   A NN+ + ++ED EA D+L+ V       ++ +P+  
Sbjct: 418  VPEEQKVNEVLLKFAKKYDVKYFAANNTYYTNKEDAEAQDILLCVKDGETTGEQGKPKKY 477

Query: 248  ------------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                           + Y+K+  EM  +F+D PEA+  T EIA +          +LP++
Sbjct: 478  VGKRGREYRFGLPNDEFYIKSPDEMKKLFADYPEAIACTAEIAEKIEGFELARDVLLPKY 537

Query: 296  IEKECDDIQKEEEN--------ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
               +     K+ EN         LR+    G + R  +          + ++RLDFEL  
Sbjct: 538  DIPQEFIDPKDAENGGNRGENAYLRHITYEGAKKRYPE-------ITAEIKERLDFELET 590

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I R  + GYFLIV DF   A++  + VGPGRGS AGS  AY   IT+IDP+++ LLFERF
Sbjct: 591  IERTGYPGYFLIVQDFTTAAREMGVSVGPGRGSAAGSAVAYCTAITNIDPIKYDLLFERF 650

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNPDR+S+PD DIDF    R +VI YV  KYG  +VAQI T+G++ AK+A+RD  R +++
Sbjct: 651  LNPDRVSLPDIDIDFDDHGRQKVIDYVIEKYGANQVAQITTYGTMAAKSAIRDTARVMEL 710

Query: 468  PYSQVDRLCKLIPNDPAHPVSL----------------QAIADDSRFREARLADPSVDRL 511
            P    DR+ KL+P+     +                  +AI+          A+ +  ++
Sbjct: 711  PLMDADRIAKLVPDIKLKALFDLASDKKKLSAKLKNNGEAISKAEELLNLAKANDASAKV 770

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
            +  ++ LEG  R+   HA G++I    +++ VP+     SD+  TQF+   +E AGL+K 
Sbjct: 771  INQARVLEGSVRNTGIHACGVIITPDDITKFVPVALAKDSDMYCTQFDNAVVENAGLLKM 830

Query: 572  DFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            DFLGLKTLTL++ ++  + +R     D    P DD +TY L     T+GIFQ ES GM++
Sbjct: 831  DFLGLKTLTLIKDAVRIVEERHGVKLDPDEFPIDDPKTYELFQKGETVGIFQYESPGMQK 890

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
             L  ++P    D+IA+ +LYRPGP++ I  +  RKNG E+I    P ++  L+ET G+ +
Sbjct: 891  YLRDLKPTEFSDLIAMNALYRPGPLEYIPNFVKRKNGLEEISYDLPEMEEYLQETYGITV 950

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVM ++Q L+G++  EADVLR+AMGKKI   +++ K +FI+  ++ G  K +   I+
Sbjct: 951  YQEQVMLLSQKLAGFTKGEADVLRKAMGKKIFALLEELKPKFINQGAEKGHPKDVLEKIW 1010

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            +    FA Y FNKSH+  YA ++YQTA++K HYP E++A+ ++  M  +  +  F ++ +
Sbjct: 1011 KDWEAFAAYAFNKSHSTCYAWVAYQTAYLKAHYPAEYMASVLSNNMGQITDVTFFMEECK 1070

Query: 811  QFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDF 868
            +  I+++ P VN     F V DN +I + LAAIKG G+     I++    +  +  + DF
Sbjct: 1071 RAGIEVLGPDVNESNSGFTVNDNGQIRFGLAAIKGAGSAAVESIIQERKSNGQYKDIFDF 1130

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQWVEKNRT 920
              R+  K +N++  ESL  AG  DCF  Y R Q L S       ++ I KYAQ ++  + 
Sbjct: 1131 AERIPLKSVNKKTFESLAMAGGFDCFKEYHRKQFLASDNGEGTLIEKIIKYAQKLQHEKD 1190

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
            +   ++F  E G       + +    +   +   E+ V+G + SGHPLD Y+  +     
Sbjct: 1191 SAQTSLFGGEGGVAIPPPRVAEMEPYSELEKLNIEKEVVGLFISGHPLDEYRFEMESFCN 1250

Query: 981  KGYEESVA---TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                E          N I++  +V +   ++T+ G   G +T  +    +    F
Sbjct: 1251 TQVSELNDIESLASKNEIKVGGIVTAVAHRQTKTGKPFGTLTLEDYGGSFTFFMF 1305


>gi|118594636|ref|ZP_01551983.1| DNA polymerase III, alpha subunit [Methylophilales bacterium
            HTCC2181]
 gi|118440414|gb|EAV47041.1| DNA polymerase III, alpha subunit [Methylophilales bacterium
            HTCC2181]
          Length = 1154

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1045 (39%), Positives = 607/1045 (58%), Gaps = 42/1045 (4%)

Query: 5    LEKS--PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            +  S  PSF+HL+ HS YS+ +G + +   + K      PA+ +TD +NLF A++F + A
Sbjct: 1    MSDSTQPSFIHLRCHSEYSITDGIVRIPEYIKKAVDTGMPALGLTDLSNLFGAVKFYKAA 60

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              +GI+PI+GC + I+ + N                + L     +GY  L EL+S+ +L 
Sbjct: 61   TQSGIKPILGCDVWIENETNP----------DQPYRMALFCQNQQGYIHLSELLSKAFLT 110

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +Q +    +  SW+     +GLI L+G   G I      N    A++ L  ++ +FGDR 
Sbjct: 111  NQSRGKAILKKSWVLNAH-DGLIALSGALKGNIGYLLDQNKIDEAQEELSAWRAIFGDRF 169

Query: 183  YVNLQRHRGY-----DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            Y+ +QR+              + + LA  +++PLVAT+   F+  +D+ AH+    +A  
Sbjct: 170  YLEIQRYGSDARKKKQEEYIQKAIFLAVNNQVPLVATHPIQFMHTDDFRAHESKTCIADG 229

Query: 238  TVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
             V++ + RP+  TP+ Y K   EM+ +F D+P A  NTV IA+RC+F  Q+    LP F 
Sbjct: 230  YVLADQRRPKDFTPEQYFKTPEEMLELFHDIPSATHNTVTIAKRCNFQFQLGEIFLPDFP 289

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKF 353
                  I    E+ L  +A  GL+ RL    I           Y  RL+FE+ VI  M +
Sbjct: 290  IPNGTKI----EDYLLIEAKKGLDQRLEDLYIDLKEREDQIPKYLDRLNFEVKVINEMGY 345

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
            +GYFLIVADFI W+K N+IPVGPGRGSGAGSV AY+L ITD+DPL ++LLFERFLNPDR+
Sbjct: 346  AGYFLIVADFINWSKSNHIPVGPGRGSGAGSVVAYSLGITDLDPLAYNLLFERFLNPDRV 405

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPDFDIDFCQ+ RD VI YV+ KYG + V+QI TFG++ AKA LRDVGR L +PY+ VD
Sbjct: 406  SMPDFDIDFCQEGRDRVIDYVKQKYGSDSVSQIATFGTMAAKAVLRDVGRVLDLPYNFVD 465

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
             + KL+P +    +   AI  + + ++    +  V  L +++ +LEGL R+ S HA G++
Sbjct: 466  TIAKLVPLELGITLK-DAIEKEPQIKDRIKKEEEVKELFDLALRLEGLVRNVSMHAGGVL 524

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            I    +S   P+Y    ++  V+QF+   +E  GL+KFDFLGL+TLT++  +L+      
Sbjct: 525  IAPTKISAFSPIYCQPGAEGIVSQFDKDDVEAVGLVKFDFLGLRTLTIVAMALENANHIR 584

Query: 594  VKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             +       L  IP DD  T+ LL    T  +FQLES GM+  L+  +PDC EDIIALV+
Sbjct: 585  SQKGEDPLQLESIPIDDKPTFDLLKASNTTAVFQLESRGMKDMLKQAKPDCFEDIIALVA 644

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RK+G++++   HP  + +LKET G+ +YQEQVMQIAQ+++GY+L 
Sbjct: 645  LYRPGPMDLIPDFCKRKHGQQQVKYPHPATESILKETYGIAVYQEQVMQIAQVVAGYTLG 704

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEMD Q+  F+ GA K+ +++  A ++F+LL KFA YGFNKSHAAA
Sbjct: 705  GADLLRRAMGKKKIEEMDAQRATFVEGALKHELNQRQATDLFDLLEKFAGYGFNKSHAAA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+I+YQT ++K HYP  F+AASM+ +M+N + +     D    NI ++PP++N     F
Sbjct: 765  YAMIAYQTGYLKAHYPSAFIAASMSADMNNTDNVHMLFDDCVLNNITLLPPNINKSEYKF 824

Query: 829  KVGDNR-IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
               D+  I Y L A+KG G +    I++   A+ PF SL DF +R+D +K+NR+  ESL+
Sbjct: 825  VPVDHESILYGLGAVKGTGLSAIDIIIDERNANGPFTSLFDFAARLDLRKVNRKAFESLI 884

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             +GA D    +R  LL S++     A+  + N       +F   + T   ++ L +  + 
Sbjct: 885  RSGAFDEIEPNRATLLASVNLAITKAE--QANAHQGQNALFEEFETT---EVPLVEVGLW 939

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                +   E+  LGFYFSGHP   Y+ ++R+       E   T R     +A ++ +   
Sbjct: 940  EERKQLAEEKIALGFYFSGHPFKFYEKMIRQFVPNKLSEL--TPRDATYLIAGIISTIHM 997

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANF 1031
            + T +G  I  VT  +     +   
Sbjct: 998  RMTSRGK-IAIVTLDDGVGRIDVVI 1021


>gi|269795562|ref|YP_003315017.1| DNA polymerase III subunit alpha [Sanguibacter keddieii DSM 10542]
 gi|269097747|gb|ACZ22183.1| DNA polymerase III, alpha subunit [Sanguibacter keddieii DSM 10542]
          Length = 1181

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1070 (35%), Positives = 573/1070 (53%), Gaps = 49/1070 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            ++    +S  FVHL VH+ YS+L+GA  L ++ ++     Q AIA TD   LF A +F +
Sbjct: 1    MSSAPPRSEDFVHLHVHTEYSMLDGAARLGDLFEETKRVGQSAIATTDHGYLFGAYDFWK 60

Query: 61   KACAAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
            +A  AG++PIIG +  +               +    +   +       + +     EG 
Sbjct: 61   QATDAGVKPIIGVEAYVTPGTSRFDNTRVRWGDASQASDDVSARGAYTHLTMWARNNEGM 120

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L    S   L  Q  +  R+    L+   + GLI  TG  SG +           A K
Sbjct: 121  HNLFRASSLASLEGQMGKWPRMDRDLLERY-SPGLIASTGCPSGEVQTRLRLGHYDEAVK 179

Query: 170  RLLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                 + +FG +  YV L  H    +      +++LA     P+VATN+  ++ +ED  +
Sbjct: 180  AAGELQDIFGKEYFYVELMDHGLDIETRVFKDLLRLAKDIGAPIVATNDLHYVRQEDSGS 239

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
             + L+A+   + ++  DR +   D +Y+K+ +EM  ++ +LPEA +NT+ IA +C     
Sbjct: 240  QEALLAINSGSTLTDPDRFKFDGDGYYVKSAAEMRRLWKELPEACDNTLVIAEQCEVSFN 299

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
              A  +P F     +D    E +    +   GL+ R   G         + R+R DFE  
Sbjct: 300  TAANYMPNFPAPAGED----ETSWFIKEVETGLQYRYPDG------IPTEVRERADFETK 349

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI +M F GYFL+VADFI W+K NNI VGPGRGSGAGS+ AYA+ ITD+DPL   L+FER
Sbjct: 350  VITQMGFPGYFLVVADFINWSKDNNIRVGPGRGSGAGSMVAYAMRITDLDPLVHGLIFER 409

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNPDR+SMPDFD+DF + RR EVIRYV +KYG +RVAQI+T+G+++AK AL+D  R L 
Sbjct: 410  FLNPDRVSMPDFDVDFDERRRGEVIRYVTDKYGEDRVAQIVTYGTIKAKQALKDSSRLLG 469

Query: 467  MPYSQVDRLCKLIPN-DPAHPVSLQAIADD--------SRFREARLADPSVDRLLEISQK 517
            +PY+  D+L K +P       +SL  I D           FR+   ADP   R++E+++ 
Sbjct: 470  LPYAMGDKLTKAMPPAIMGKDISLTGIFDPDDKRYSEAEEFRQVHAADPEAQRVVELAKG 529

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            +EGL R    HAAG+++   PL  ++P+ R ++    +TQF+    E+ GLIK DFLGL+
Sbjct: 530  IEGLKRQWGVHAAGVIMSSEPLIDIIPIMRRLQDGAVITQFDYPKCEELGLIKMDFLGLR 589

Query: 578  TLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT+L  +L+ +       +DL  +  DD  TY LL+   TLG+FQL+  GMR  L+ M+
Sbjct: 590  NLTILDDALENIVMNGKEAIDLESLTLDDPNTYALLSRGDTLGVFQLDGGGMRTLLKLMR 649

Query: 637  PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVII 690
            PD  EDI A+ +LYRPGP+  ++   Y  RKNG +++V IHP ++  L      T G+I+
Sbjct: 650  PDNFEDISAVGALYRPGPMGANSHTNYALRKNGLQEVVPIHPELEEPLAEVLGTTHGLIV 709

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVM IAQ+++G+SL +AD+LRRAMGKK K E+DKQ E F  G  + G S      ++
Sbjct: 710  YQEQVMSIAQIVAGFSLGQADILRRAMGKKKKSELDKQFEGFSGGMVERGYSMAAVKALW 769

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            ++L  F+DY FNK+H+AAY V+SY TA++K +YP E++AA +T   D+ +K   +  + R
Sbjct: 770  DILLPFSDYAFNKAHSAAYGVVSYWTAFLKANYPTEYMAALLTSVRDDKDKSALYLNECR 829

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFC 869
            +  I ++PP VN+   +F      I + L A++ VG      I+    A + F S  DF 
Sbjct: 830  RMGITVLPPDVNSSSANFTAVGKDIRFGLTAVRNVGANVVEAIVTTREAKQNFTSFTDFL 889

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             +V +   N+R +ESL+ AGA D   + R  L    +        V++       ++FA 
Sbjct: 890  DKVPAVVCNKRTIESLIKAGAFDSLDHPRRALQVVHEQAVDSVIGVKRKEAEGQFDLFAG 949

Query: 930  EKGTFSD----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                  D     + +              E+ +LG Y S HPL   + +L++       +
Sbjct: 950  FGDEADDGMSFSVDIPDLPDWEKKQLLAFEREMLGLYVSDHPLSGLEHVLQQAAEVSIAK 1009

Query: 986  SV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +       G+ + +A ++ S Q+K +++G+    VT  +     E  FF
Sbjct: 1010 LLTDEDRPDGSTVVIAGLITSLQRKMSKQGNPWAAVTIEDLDGGVEVMFF 1059


>gi|225351454|ref|ZP_03742477.1| hypothetical protein BIFPSEUDO_03049 [Bifidobacterium
            pseudocatenulatum DSM 20438]
 gi|225157798|gb|EEG71081.1| hypothetical protein BIFPSEUDO_03049 [Bifidobacterium
            pseudocatenulatum DSM 20438]
          Length = 1196

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/1082 (31%), Positives = 549/1082 (50%), Gaps = 64/1082 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S +FV L  H+ YSLL+GA  + +++ +      PA+ ITD  N+  A E    A  
Sbjct: 1    MATSGNFVQLHNHTHYSLLDGASKIPDLVRRAKELNMPAVGITDHGNMHGAYEMWSTAVK 60

Query: 65   AGIQPIIGCQLDIDMQD---------------------NLKMTNQGKTPFPTVPSIVLLV 103
             G++PIIG +  +  +                      + +      +    +  + +  
Sbjct: 61   EGVKPIIGIEAYVTPETARQDQTRVSWDTNWNPDIDPQHRRRNPNDVSGGGLITHLTMWA 120

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
             T EG   L++  +   L  +  +  R+    L +  ++G+I  +G  SG I        
Sbjct: 121  ETDEGLVNLMKASTDANLEGRVMRYPRMDKEILAKY-SKGIIASSGCPSGIIQTRLLLGQ 179

Query: 164  SQVAEKRLLTFKKLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLS 221
               A +     + +FG D  Y+    H    ++     ++ +A     PL+ATN+S ++ 
Sbjct: 180  FDEALRAAGELQDIFGRDNFYIEFMDHGLKIEKQVTDGLLDIAKKLNAPLLATNDSHYVR 239

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
             ED  + D ++ +   + + +  R +     +YLK+  EM  +F D+PEA +NT+EIA R
Sbjct: 240  AEDAGSQDAMLCINSGSTLDEPGRFKFDGTGYYLKSAEEMRELFKDIPEACDNTLEIAER 299

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
            C+ +   H            +    +E +    K   GLE R        G+   +  ++
Sbjct: 300  CNVMFDDHEDGAFMPQFDCPEG--WDETSLFLKKVEEGLERRY------DGHPPIEVLKQ 351

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
             D+E  VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++ 
Sbjct: 352  ADYECGVICQMQFCGYFLVVADYINWAKSHGVMVGPGRGSAAGAMVAYAMGITELDPIKH 411

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             L+FERFLNP+R+S+PD D+DF  D R  V+ YV +KYG ++VAQ + +G+++ K AL+D
Sbjct: 412  GLIFERFLNPERVSLPDIDVDFDPDGRGRVLDYVGDKYGRDKVAQCVIYGTIKTKQALKD 471

Query: 461  VGRALQMPYSQVDRLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDR 510
              R +   +S  +R+ K +P        + L  I + S         FRE   +DP V R
Sbjct: 472  SARIMGYEFSMGERITKALPPAQTGGKDIPLHDIFEPSSKRYAEAREFRELYDSDPDVKR 531

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            + + +  +EGL R    HA   ++G  P+S   P+  +       T       E  GL+K
Sbjct: 532  VTDEAMGIEGLIRQTGVHACATIMGSEPISNTSPL-LERTDGTVTTTLEYHTCETLGLVK 590

Query: 571  FDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             DFLGL  LT+++ +L+ +      ++D + IP DD  TY LL+   TLG+FQL+S GMR
Sbjct: 591  MDFLGLSNLTVIRDTLNNIEANGKTRIDHTKIPLDDRATYDLLSRGDTLGVFQLDSDGMR 650

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLK 683
              L+ ++P+   DI AL++LYRPGP+D      Y  RKNG +KI  IHP     +  +L 
Sbjct: 651  SLLKTLKPNNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKEVLD 710

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+I+YQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+
Sbjct: 711  ETYGLIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSQ 770

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
              A  ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K  
Sbjct: 771  EAAQAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKDKTA 830

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KP 861
             +  +AR+  IQ++ P VN    ++    + + + L AI+ VG      I++   +    
Sbjct: 831  LYLGEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGKAAVDAIVKERENDHGK 890

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + +  DF  RV  + LNRR++ESL+ AGA D    +R  L    +        +++ +  
Sbjct: 891  YVNFPDFIRRVPMEALNRRLVESLIKAGAFDSIDPNRRALFTIHEAAINSVVGLKRKQAE 950

Query: 922  KHENIFAHEKGTFSDK-------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
               ++F+  +    D        + +      +   +   E+ +LG Y S HPL   + I
Sbjct: 951  GQFDLFSDLEDAGEDDAGMGDAMVNVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQSI 1010

Query: 975  LRKMGIKGYEES----VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            L  +                 G  + +A ++ +  ++ ++KG+    VT  +     +  
Sbjct: 1011 LVSLREMSIAHLIDRAANMPDGQQVTVAGLITNVDRRMSKKGNPWAIVTIEDLESSIQCM 1070

Query: 1031 FF 1032
            FF
Sbjct: 1071 FF 1072


>gi|126440764|ref|YP_001058246.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 668]
 gi|126220257|gb|ABN83763.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 668]
          Length = 1274

 Score =  742 bits (1915), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1046 (39%), Positives = 605/1046 (57%), Gaps = 38/1046 (3%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
              +   P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A
Sbjct: 99   APMSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEA 157

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              AGI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L 
Sbjct: 158  RDAGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLT 207

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +Q +    +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    
Sbjct: 208  NQYRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGF 267

Query: 183  YVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ LQR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++
Sbjct: 268  YIELQRYGQPGAEAYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILA 327

Query: 242  QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               R  R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   + 
Sbjct: 328  NPRRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDG 387

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357
              +    ++ L   +  GL+ RL Q    +         Y QRLDFE   I +M F GYF
Sbjct: 388  MSL----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYF 443

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPD
Sbjct: 444  LIVADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPD 503

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + K
Sbjct: 504  FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAK 563

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP  P   V++   + ++   +E    +  V +LL+++Q++EGL R+   HA G++I  
Sbjct: 564  LIPFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAP 623

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593
              L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +     
Sbjct: 624  GKLTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 683

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPG
Sbjct: 684  ENWSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPG 743

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+L
Sbjct: 744  PMDLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 803

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++
Sbjct: 804  RRAMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLA 863

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            Y TAW+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+    
Sbjct: 864  YYTAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAE 923

Query: 834  R-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                    I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++
Sbjct: 924  ADGKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMI 983

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AGA D    +R QLL S+    + A+    N       +F    G  + +  L      
Sbjct: 984  RAGAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAW 1040

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            +   R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + 
Sbjct: 1041 DDKRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRT 1097

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + T++G  +      +   + E   F
Sbjct: 1098 QMTQRGK-MVIALLDDGTGQCEVTVF 1122


>gi|269219520|ref|ZP_06163374.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 848
            str. F0332]
 gi|269211099|gb|EEZ77439.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 848
            str. F0332]
          Length = 1175

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/1065 (32%), Positives = 543/1065 (50%), Gaps = 46/1065 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K   F HL VH+ YS+L+GA  +  ++ +  A  Q A+AITD    F A EF ++  A
Sbjct: 1    MAK--DFAHLHVHTEYSMLDGAAKIKKLVAQAKAQNQKAVAITDHGYCFGAYEFYKECKA 58

Query: 65   AGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
             G++PIIG +  +                        +       + LL    +G   L 
Sbjct: 59   QGVKPIIGVEAYMTPGTSRFGSDRVLWGEEGQRADDVSARGAYTHLTLLAYNNKGLHNLF 118

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             + SR  L  Q  +  R+ +  L+    EGLI   G  SG +           A +    
Sbjct: 119  RMDSRASLEGQMGKWPRMDMDLLETYH-EGLIATAGCPSGEVQTRLRLGQFDEAYEAAGR 177

Query: 174  FKKLFG-DRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             + LFG +  YV +  H    ++   ++++ LA   + PL+ATN+S ++   D    D +
Sbjct: 178  MQDLFGKENYYVEVMDHDNSIEKRVRNELLDLARKIDAPLIATNDSHYVEAGDAPIQDAM 237

Query: 232  MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + +   + +   DR       ++L++  EM  +F DLP A ENT+ +A RC+        
Sbjct: 238  LCINSGSTLQDPDRFTFDGTGYHLRSSEEMHELFGDLPGACENTLLVAERCNVSFTTADE 297

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                          ++  +    +   GL VR  +          D R+R D+E++VI +
Sbjct: 298  GANYMPV-FPVPEGEDLTSWFVKEVDRGLHVRFGE------RIPADVRERADYEVSVILQ 350

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F GYFL+V+D+I WAK+N I VGPGRGSGAGS+ AYAL IT++DP+R  LLFERFLNP
Sbjct: 351  MGFPGYFLVVSDYILWAKRNGIRVGPGRGSGAGSMVAYALQITELDPIRHGLLFERFLNP 410

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPD D+DF + RR EVI YV+ KYG E+V+Q++TFG+++ K AL+D  R L  P+ 
Sbjct: 411  ERVSMPDIDVDFDERRRGEVIEYVEKKYGAEKVSQVVTFGTIKTKQALKDSARVLGYPFE 470

Query: 471  QVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGL 521
              +R+ K +P       ++L  I ++          FR+    D    ++ E++Q L GL
Sbjct: 471  MGERMTKALPPTVQGKDIALADIHNEKAERFVEAGDFRQLVAGDQDASKVFELAQGLAGL 530

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R    HA  +++   PL  ++P+ +       +TQF     E+ G++K DFLGL  LT 
Sbjct: 531  TRQWGVHACAVLMCSEPLMDVIPIMKRPSDGATITQFEYPLCEELGVLKMDFLGLSNLTT 590

Query: 582  LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            ++ +LD +      +V +  +  DD  T+ LL    TLG+FQL+ SGMR  L+ M+P   
Sbjct: 591  IEDALDNIVYNGKERVAIEEVELDDQPTFELLQRADTLGVFQLDGSGMRALLKQMRPTEF 650

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPM----LKETQGVIIYQEQ 694
            EDI A+ +LYRPGP+      +        ++I  IHP ++      L  T G+I+YQEQ
Sbjct: 651  EDISAVSALYRPGPMGMNSHTSYALRKNGLQEIAPIHPELEEPLREILAPTYGLIVYQEQ 710

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VMQIA++ +G+++ +AD LR+AMGKK  + + KQ E F +G   NG SK     ++E+L 
Sbjct: 711  VMQIARVCAGFTMGQADTLRKAMGKKKLDVLQKQFEGFSAGMLANGYSKECVDRLWEILV 770

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y FNKSH+A Y VISY TA++K +YPVEF+AA +T + DN +K+  +  + R+  I
Sbjct: 771  PFAQYAFNKSHSACYGVISYWTAFLKANYPVEFMAALLTSKKDNKDKLALYLGECRRMGI 830

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVD 873
             ++ P VN    DF     ++ + L+A++ VG      I+        F S +DF  +V 
Sbjct: 831  TVLVPDVNDSDSDFSAVGEQVRFGLSAVRNVGANVVEGILGARREKGAFTSFQDFLDKVP 890

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             +  N+R +E LV AGA D  GYSR  LL  ++        ++KN      ++F      
Sbjct: 891  LQVCNKRAIECLVKAGAFDSMGYSRKALLAKVEEAVDSVVSLKKNEAAGQFDLFGGADVD 950

Query: 934  FSD--KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                  + +      +  V+ ++E+ +LG Y S HPL   + +L +         +    
Sbjct: 951  LGAGVDVVVPDIPEWDKKVKLDHERDMLGLYVSDHPLSGMEHVLDRAADTTIVRLMNEES 1010

Query: 992  GNN--IRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
                 + LA ++ S Q + ++K G     +   +     E NFFP
Sbjct: 1011 IQEGFVSLAGLITSVQPRVSKKNGKLWATIILEDLTGSAEINFFP 1055


>gi|311742780|ref|ZP_07716589.1| DNA-directed DNA polymerase III alpha subunit [Aeromicrobium marinum
            DSM 15272]
 gi|311314408|gb|EFQ84316.1| DNA-directed DNA polymerase III alpha subunit [Aeromicrobium marinum
            DSM 15272]
          Length = 1175

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1062 (33%), Positives = 539/1062 (50%), Gaps = 41/1062 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL VH+ YS+L+GA  L+ + ++ A    PAIA+TD  NL  A +F  KA A
Sbjct: 1    MPSDSSFVHLHVHTEYSMLDGASLLDGLFERTAELGMPAIAMTDHGNLHGAYDFYSKARA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQ---------GKTPFPTVPSIVLLVSTAEGYQRLIEL 115
             G++PIIG +  +    +     +                   + LL  + EG   L  L
Sbjct: 61   HGVKPIIGLEAYLTPNTHRSEKKRVQWNKGGDDDVAGGGAYTHMTLLAESTEGMHNLFRL 120

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             SR  L  Q     R     L     +GLI  TG  SG I       + + A +    F+
Sbjct: 121  SSRSSLEGQ-YYKPRADRELLHTY-AKGLIGTTGCPSGEIQTWLRIGNYEKARESAAEFQ 178

Query: 176  KLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             +FG +  ++ L  H    +      +++L     LP +ATN+S +   ED +AHD L+ 
Sbjct: 179  DIFGRENFFLELMDHGLDIETRVRDGLMRLKRDLALPAIATNDSHYTHPEDADAHDALIC 238

Query: 234  VAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            V+    +S  +R +     +Y+K+ +EM S++ D  E  E                    
Sbjct: 239  VSSGKTISDPNRLKFDGGGYYIKSAAEMRSLWEDKHEMPEACDNTLLIAERCQVEFTESN 298

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
              ++ +        EE+    +   G+  R  +        + + R+R + EL V+    
Sbjct: 299  GGYMARADVPAGHTEESWFVEEVWRGIHARYGE------TVSDEVRERTEMELQVVRDKG 352

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            + GY+L+VADFI WAK N I VGPGRGSGAGS+ AYAL ITD+ PL   L+FERFLNP+R
Sbjct: 353  YCGYYLVVADFIGWAKDNGIRVGPGRGSGAGSIAAYALRITDLCPLTHGLIFERFLNPER 412

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
             SMPDFDIDF + RR EVIRYV  KYG ERVA I TFG L++KAA++D  R L  P++  
Sbjct: 413  PSMPDFDIDFDERRRAEVIRYVSEKYGSERVAMIATFGRLKSKAAIKDANRVLDFPFAMG 472

Query: 473  DRLCKLIPND-PAH--------PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            +++ K +P D                    D   FR+   AD  V ++ + +  LEG  R
Sbjct: 473  EKITKALPADVMGKGVPLPALFDDKHSRYGDGKDFRDLHAADAEVRKIYDTALGLEGQIR 532

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
                HAAG+++   PL  +VP+ +  +    +TQF+    E  GL+K DFLGL+ LT+L 
Sbjct: 533  QWGVHAAGVIMSSEPLIDIVPIMKREQDGAIITQFDYPMCESLGLVKMDFLGLRNLTVLD 592

Query: 584  KSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             ++  +   RGV + L  + FDD E Y LL    TLG+FQL+   MR  L  MQPD  ED
Sbjct: 593  DAVSNIRSNRGVDLVLEDLTFDDPEAYALLGRGDTLGVFQLDGGPMRALLRQMQPDNFED 652

Query: 643  IIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQGVIIYQEQVM 696
            I A+++LYRPGP+  ++ V Y  RK GK+ I  IHP +     P+L  T G+I+YQEQVM
Sbjct: 653  ISAVIALYRPGPMGANSHVNYALRKTGKQPIDYIHPELTEALKPILGTTYGLIVYQEQVM 712

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
             IAQ L+G++L +AD LRRAMGKK +E ++K+   F +G  + G SK     ++++L  F
Sbjct: 713  SIAQELAGFTLGQADNLRRAMGKKKREVLEKEFVGFEAGMMERGYSKGAIKTLWDILVPF 772

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            ADY FNK+H+AAY VISY TA++K  YP E++AA +T    + +K   +  + R+  IQ+
Sbjct: 773  ADYAFNKAHSAAYGVISYWTAYLKARYPAEYMAALLTSTRGDKDKSAIYLGECRRLGIQV 832

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            +PP VN     F      I + L+AI+ VG      I+E      +    DF  +V    
Sbjct: 833  LPPDVNDSIGTFASVGEDIRFGLSAIRNVGDNVVAGIVEGRQAGAYTDFPDFLDKVPLHV 892

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGTFS 935
             N+R+L+SL+ +GA D  G+ R  L    D        +++N     +++F   +  +  
Sbjct: 893  CNKRMLDSLIKSGAFDSLGHRRRALTTIADEAVDAYVDLKRNAAIGQDSLFDGLDDASSG 952

Query: 936  DKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---ATIR 991
              I++         +     E+ +LG Y S HPL   + +LR        E +       
Sbjct: 953  ITISVPDQMPEWEKTQLLAFERDMLGLYVSDHPLRGLEHVLRASSDCSLGELMVDTERAD 1012

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            G+ + +  ++    ++ ++KG     +T  +     E   FP
Sbjct: 1013 GSTVTICGLITGVSRRMSKKGDTWASITVEDLEGGVEVMVFP 1054


>gi|330825578|ref|YP_004388881.1| DNA polymerase III subunit alpha [Alicycliphilus denitrificans K601]
 gi|329310950|gb|AEB85365.1| DNA polymerase III, alpha subunit [Alicycliphilus denitrificans K601]
          Length = 1182

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1057 (38%), Positives = 588/1057 (55%), Gaps = 59/1057 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   ++  +   A D QPA+A+TD NNLF A++F ++    G++PI
Sbjct: 2    FVHLRLHTEFSVVDGTTRIDEAVKAAAKDGQPALAVTDLNNLFGAVKFYKEGRGKGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++                    +VLLV   +GY  L EL++R +  +  K    
Sbjct: 62   VGAEVCLE-----------GDAGAPPSRMVLLVQNRQGYLNLSELLTRAWTRNVVKNLPL 110

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
                WL E+  EGLI+L G  +GP+ +A        A    L    +F  R Y+ +QR  
Sbjct: 111  CTWDWLAEL-NEGLIVLAGAQAGPVGQALMKGDDDGAAAVALRLAGIFPHRFYIEIQRAG 169

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
            R  D    +  VQLA   +LP+VAT+   F + + YEAH+  + +A   +++   R  R 
Sbjct: 170  RADDEAHVTTAVQLAARLQLPVVATHPVQFATADGYEAHEARVCIAEGEILANPRRVRRF 229

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + Y K+ +EM ++F+D+P A+ NT+EIA+RC+  L +  P LP F       I    E
Sbjct: 230  TREQYFKSGAEMQALFADVPSAIANTLEIAKRCNLTLVLGKPQLPDFPTPGGMAI----E 285

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R  +  GL+ RL      +    +    Y +RL+FEL  I +M F GYFLIV DFIQ
Sbjct: 286  EYFRVASYDGLKERLLHLFPDEAERERQRLRYEERLEFELGTILKMGFPGYFLIVGDFIQ 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N  PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ 
Sbjct: 346  WAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQA 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR + M Y+  D + KL+P  P  
Sbjct: 406  NRDRVIDYVKEKYGKDAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGQ 465

Query: 486  PVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
              +                A+  +    E    +  V  ++E++Q+LEG+ R+   HA G
Sbjct: 466  TYTLAYPPEPKKEGDKNNYALELEPMLYERVRKEEDVRTIIEMAQQLEGMTRNIGMHAGG 525

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            ++I    L+   P+Y+   S+  V+Q++   +E  GL+KFDFLGL TLT+L+ + DF+  
Sbjct: 526  VLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIARDFIRA 585

Query: 592  RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R           +P DD  TY L     T  +FQ ES GM+  L+  +P  +ED+IAL +
Sbjct: 586  RHKGQENFAFENVPLDDAPTYRLFADGMTEAVFQFESRGMQGMLKEARPSRLEDLIALNA 645

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  + NRK+GKE +   HPL++P+L ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 646  LYRPGPMDLIPTFVNRKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM + +  F  GA++ GIS+  A  +F+L+ KFA YGFNKSHAAA
Sbjct: 706  GADMLRRAMGKKKPEEMAEHRLIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHAAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTPCVD 827
            Y++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA +   I   PP +N     
Sbjct: 766  YSLLAYHTGWLKVHYTAEFYCANMTVEMDDTDKLKVLYEDAVKHFGITFEPPDINRGNYR 825

Query: 828  FK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKK 876
            F+ V D  I Y L A+KG G      I+ A              PF SL DFC RVD  +
Sbjct: 826  FEPVTDKVIRYGLGAVKGTGQQAIEAIVAAREGQGVGPQGGTRGPFKSLFDFCVRVDRSR 885

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKG 932
            +N+R +E+L+ AGA D    +R  L+ S+D    +A     N       +F        G
Sbjct: 886  INKRTVEALIKAGAFDALHLNRAALVASIDRAFDFANAQLAN--ANQGGLFDMMGDDAIG 943

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
            + + +  L + +      R   E+  +GFY SGH  D  +  +R+       E   +   
Sbjct: 944  SSTQEPDLVEATPWGIKERLMQEKTAVGFYLSGHLFDEVQQEVRRFVRTPMAELADSRET 1003

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                LA +V   +    ++G         + +   EA
Sbjct: 1004 Q--VLAGIVGDCRVITGQRGKL-ALFKLDDKSGVIEA 1037


>gi|90407915|ref|ZP_01216090.1| DNA polymerase III subunit alpha [Psychromonas sp. CNPT3]
 gi|90311006|gb|EAS39116.1| DNA polymerase III subunit alpha [Psychromonas sp. CNPT3]
          Length = 1170

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1044 (37%), Positives = 579/1044 (55%), Gaps = 30/1044 (2%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
               P F+HL+VHS +S+++G   +  ++   AA   PAIA+TD  N    ++F   A +A
Sbjct: 7    SHDPKFIHLRVHSDFSMVDGLTKVKALIANTAAMNMPAIALTDQTNFCGLVKFYTAAHSA 66

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G++P++G    +          Q +        I  L    EGY+ + EL+S+ Y     
Sbjct: 67   GVKPLVGVDFWV----------QSEILEKEQFRITALAMDNEGYKNITELISKAYFRGHV 116

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 +   WL+E    G+I+L+G   G + +       ++A +    ++  F  R Y+ 
Sbjct: 117  GGRAILDQDWLKEYNH-GIILLSGAKEGDLGKMLLKGHFELASEITQFYQTYFPQRYYLE 175

Query: 186  LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L R     +       ++ A  H+LP+VATN  +F ++  ++AH + + +     +  + 
Sbjct: 176  LIRTGRVKEETYIHHALEWAEKHQLPVVATNQVVFSNKTLFDAHVIRVCINQGYTLGDER 235

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP   + + YL++  EM  +FSD+PEAL+N+VEIA+RC+  L++    LP F   +   I
Sbjct: 236  RPHDYSEEQYLRSPEEMCELFSDIPEALQNSVEIAKRCNVTLRLGECFLPDFPT-QGKPI 294

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                    R    A LE    + +         Y +RL  EL VI  M F GYFLIV +F
Sbjct: 295  NDYFIEVSRQGLNARLEFLFDKNSADFAQIRAPYDERLRIELEVINSMGFPGYFLIVMEF 354

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL+  LLFERFLNP+R+SMPDFDIDFC
Sbjct: 355  IQWSKDNGIPVGPGRGSGAGSLVAYALNITDLDPLKLDLLFERFLNPERVSMPDFDIDFC 414

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RRDEVI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VD + KL+P  P
Sbjct: 415  MERRDEVIDHVAQLYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDSISKLVPPTP 474

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +S     ++ R +E       V  L+++ + LEG  R+A  HA G+VI    ++   
Sbjct: 475  GMTLSKA-FEEEPRLQERYDGSEEVRDLIDMCRTLEGTIRNAGKHAGGVVISPTTITDFA 533

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DL 598
            P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++Q +LD              ++
Sbjct: 534  PLYCDDEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIIQWALDMANAHKSDRGEEAIEI 593

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              I   + + + LL    T  +FQLES GM+  +  +QPD  ED+IALV+L+RPGP+ + 
Sbjct: 594  ERISLTEPKCFELLKRYETTSVFQLESRGMKDLIRRLQPDSFEDMIALVALFRPGPLGSG 653

Query: 659  VV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V  +  RK+G+E +        H  +  +L  T G+I+YQEQVMQIAQ+LSGY+L  AD
Sbjct: 654  MVDNFIERKHGREAVSYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQILSGYTLGGAD 713

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM KQ+  F  GA  NGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 714  MLRRAMGKKKPEEMAKQRSTFEQGAINNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYAL 773

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT WMKT YP  F+AA ++ +MDN +K+     + ++  + + PP VN     F V 
Sbjct: 774  VSYQTLWMKTFYPAYFMAAVLSADMDNTDKVVILVSECQRMGLNLCPPDVNEGQFKFNVD 833

Query: 832  DN-RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             N RI Y + A+KGVG      I+EA      F  L DFC+RVD K   +R++E L+ AG
Sbjct: 834  KNLRIIYGIGAVKGVGEGPINAIIEARTIGGDFRDLFDFCNRVDLKHCGKRIIEKLILAG 893

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENS 948
            ALD  G  R  L+++L      A   ++  +    ++F       +D +    K      
Sbjct: 894  ALDNLGPHRAALMENLPLALASATQHKRAESFGQCDLFGVLTTDSADIENRFSKVEKWPE 953

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
                  E+  LG Y +GHP++ Y+  +R    K   +  +  RG N R+A +++  +   
Sbjct: 954  KQWLAGEKETLGLYLTGHPINQYEAHIRAFHCKPIVDLSSDRRGQNSRIAGLIIGLRVMV 1013

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T+ G R+G +T  +     +   F
Sbjct: 1014 TKAGKRMGILTVDDRTARIDITIF 1037


>gi|320107146|ref|YP_004182736.1| DNA polymerase III subunit alpha [Terriglobus saanensis SP1PR4]
 gi|319925667|gb|ADV82742.1| DNA polymerase III, alpha subunit [Terriglobus saanensis SP1PR4]
          Length = 1173

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/1058 (37%), Positives = 601/1058 (56%), Gaps = 43/1058 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  F HL +H+ YSLL+GA  ++ +   +    Q A A+TD  N++ A+ F       G+
Sbjct: 2    AAEFTHLHLHTDYSLLDGACDVDKLAAHLKKTGQTAAAMTDHGNIYGAVHFFDAMEKKGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+GC+L +        T   +         ++L    EGY+ L+ L S   L +   +
Sbjct: 62   KPILGCELYLS------KTADHREMADGYNHFLVLAENEEGYKNLVRLTSEASL-NGFYR 114

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              R+   +L +  TEGLI  +G  +G +++    +  + A+K    F ++FG +  ++ +
Sbjct: 115  KPRVSKEFLSK-HTEGLIGFSGCLAGEVNQHLMGDRYEEAKKSAGMFSEMFGKNNFFLEI 173

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    D+     + ++     +PL+ATN+S ++  +D  AH++L+ V  +  ++  +R
Sbjct: 174  QDHGLEPDKKVCDALFKMEKELGIPLIATNDSHYVEADDSRAHEILLCVQTAGSMNDPNR 233

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R  T + Y+K   EM   F+  PE    T++   RC+  +Q      P F   E   ++
Sbjct: 234  FRFDTQEFYIKTAEEMHRTFAHAPEVCTRTMQFIDRCNLKMQKVKDPFPAFPVPEGMTLE 293

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAK--GYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
               E   R      LE  +A             +Y +RL+ EL  I +MKF GYF+IV D
Sbjct: 294  SYFEEICRKGLKKRLETSVAHLRERGLLRKTISEYEERLNTELACIKQMKFPGYFMIVWD 353

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI++A++ NIPVGPGRGS AGS+ AY + ITDIDPL+  LLFERFLNP+R+SMPD DIDF
Sbjct: 354  FIRYAREQNIPVGPGRGSAAGSLVAYVMEITDIDPLQHELLFERFLNPERVSMPDIDIDF 413

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR+EVI YV+ KYG+++VAQIITF ++ AKAA++DVGRAL MPY +VDR+ K+IP  
Sbjct: 414  CMNRREEVIEYVKRKYGNDQVAQIITFNTMAAKAAIKDVGRALDMPYGEVDRIAKMIPAT 473

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +    + D +   +A  +DP +  L++ +Q+LEGL R A  HAAG+VI  +PL++L
Sbjct: 474  IGISIEQA-MKDSTALGQAYDSDPRIKELIDAAQRLEGLVRGAGVHAAGVVIAPQPLTEL 532

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601
            VP+ R       VT ++MK I+K GL+K DFLGL TLT++   L  +   RGV+VD++ I
Sbjct: 533  VPVTRAKGEG-IVTAYDMKAIDKMGLLKMDFLGLTTLTVIDDCLKLIKLNRGVEVDMATI 591

Query: 602  PFDDHETYH-LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NI 658
            P DD  T+  +     T G+FQ ES GMR  L   +P  IED+ AL +LYRPGPI    I
Sbjct: 592  PLDDAVTFEKVFHRALTSGVFQFESGGMRDVLRRYKPTSIEDLTALNALYRPGPIQGGMI 651

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK G+  +  I P ++ +L+ET GVI+YQEQVMQI+ +++GYSL  AD+LRRAMG
Sbjct: 652  DDFIERKWGRRAVEYILPDLEGLLRETLGVIVYQEQVMQISSVIAGYSLGGADLLRRAMG 711

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM KQ++ F+SGA+     K  A  +F+L+ +FA YGFNKSH+AAYA+++Y TA+
Sbjct: 712  KKNAEEMAKQRDLFMSGAAAKKHPKDKAGQLFDLMEQFAGYGFNKSHSAAYALLAYHTAY 771

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +KTHYPVEF+AA +T E    E + K+  + R+  I + PP V     +F    + I + 
Sbjct: 772  LKTHYPVEFMAALLTSETSKPENVVKYISECRELGITVQPPDVQISDANFTPAGDVIRFG 831

Query: 839  LAAIKGVGTTTARHIMEAS----ADKP--FDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            L AIK VG      I++A     A+    F SL DFC +V+ K LN+RV ESL+ AGA+D
Sbjct: 832  LTAIKNVGGNAIECIIKARRELQAEGKTGFTSLWDFCEKVELKLLNKRVFESLIKAGAMD 891

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVENSS 949
             FG  R ++  ++D   + AQ  +++       +F          S +  L + +  +  
Sbjct: 892  SFGP-RARVFVAVDGAMERAQKSQRDAAAGQHGLFGIFDSGPTDVSPQDDLPQVAEWDEH 950

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT-------IRG------NNIR 996
             R +NE+ VLGF+ SGHP+D Y+  LR M +     +           RG      N I+
Sbjct: 951  TRLQNEKEVLGFFVSGHPMDKYREKLRNMKVIAASVACEMKPEPQIFRRGGQQEPQNEIQ 1010

Query: 997  LAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
            +A ++   +  K+++ G         +   + +   FP
Sbjct: 1011 IAGVITGLKVAKSKRSGEMYAQACLEDTTGKIDLIAFP 1048


>gi|148261382|ref|YP_001235509.1| DNA polymerase III subunit alpha [Acidiphilium cryptum JF-5]
 gi|146403063|gb|ABQ31590.1| DNA polymerase III, alpha subunit [Acidiphilium cryptum JF-5]
          Length = 1139

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 476/1037 (45%), Positives = 657/1037 (63%), Gaps = 27/1037 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL+VHS+YSL EGA+  + I      +  PA+AITDT+NLF ++EFSQ    
Sbjct: 1    MPHA-DFVHLRVHSAYSLSEGAIKPDKIATLARDNAMPAVAITDTSNLFGSIEFSQACMG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPI+GCQ+ +   D  ++             +VLL   A G+  L +L SR +L  +
Sbjct: 60   KGVQPIVGCQIGLARTDLPRLPPDP---------LVLLAKDATGFANLSKLSSRSFLDTE 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 +I L  L++   EGL +LTGG  GP+ R         A + L    + F DRL V
Sbjct: 111  PGLRPQISLDTLRD-HHEGLFLLTGGRFGPVGRLLGDGQRPEAARLLAALAETFPDRLAV 169

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L+RH    +R  E  ++ LA    LPLVATN   F +E  +EAHD L+ +A   V+S+ 
Sbjct: 170  ELERHDLPTERAVEPGLITLADEAGLPLVATNECFFATETMHEAHDALLCIAEGRVLSEA 229

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            +R RVTP H+ K  +EM   F+DLP+A +NT+ IARRC+       P+LP   +      
Sbjct: 230  ERRRVTPHHWFKPAAEMRRRFADLPDACDNTLAIARRCAIAAPTRKPLLPICPKVRD--- 286

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E   LR  A  GL +RLA         A+ YR+RL  EL +I +M F GYFLIVADF
Sbjct: 287  GATEAETLRAMAEEGLALRLAAMNADAATAAK-YRERLALELGIIEQMGFPGYFLIVADF 345

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK   IPVGPGRGSGAGS+ A+AL ITDIDP+ F+LLFERFLNP+R+SMPDFDIDFC
Sbjct: 346  IQWAKSQGIPVGPGRGSGAGSLAAWALLITDIDPIPFNLLFERFLNPERVSMPDFDIDFC 405

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            Q+RRDEVI YV+ +YG +RVAQIITFG LQA+AA+RDVGR L +PY QV+++ +++PN+P
Sbjct: 406  QERRDEVIAYVRREYGADRVAQIITFGKLQARAAVRDVGRVLGLPYGQVNKVAEIVPNNP 465

Query: 484  AHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A P+ L    D + R RE R +D SV RL+EI+ ++EGLYRHASTHAAG+VIGDRPL +L
Sbjct: 466  AKPIPLAEAVDAEPRLREMRDSDESVKRLIEIAMQVEGLYRHASTHAAGVVIGDRPLDEL 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+Y+D RSD+ +TQ++MK +E+AGL+KFDFLGL TLT++ ++L+FL   G  VD++ IP
Sbjct: 526  VPLYKDPRSDMLITQYSMKHVEQAGLVKFDFLGLTTLTIISRALNFLDGLGTPVDIAKIP 585

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD +TY +L+     G+FQ E+ G R  L  M+PD  ED+IA V+L RPGP+ NI  Y 
Sbjct: 586  LDDAKTYEMLSRAEAGGVFQFETQGFRDVLRQMRPDRFEDLIAAVALNRPGPMANIPAYC 645

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G+    S  P I  +L ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+
Sbjct: 646  ARKHGES-WESPDPSIHEILSETYGIMVYQEQVMQIAQKMAGYSLGAADLLRRAMGKKIR 704

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EM+ Q++ F+ GA   G ++  AV +F+L+AKFADYGFNKSHAAAYA++SYQTAW++ +
Sbjct: 705  AEMEAQRKIFVEGAVARGTAEAKAVEVFDLMAKFADYGFNKSHAAAYALVSYQTAWLRAN 764

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-----IYY 837
            +P  F+AASM+L   N EK+    QDA +  I ++PP +N    DF V         I Y
Sbjct: 765  HPAAFIAASMSLSQANHEKLAALKQDAVRIGIPVLPPDINASAADFTVERQADGTLAIRY 824

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            +LAAIK VG    + ++ A A++PF  L DF +RVD + LN+  +E L  AGA D    +
Sbjct: 825  ALAAIKRVGAGAMQDVVRARANRPFADLADFAARVDPRALNKAQIEQLARAGAFDRIDPN 884

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R ++    + + + AQ   ++R +   N+F        + + L       +  R   E  
Sbjct: 885  RARVAAGAELLVRRAQAEAESRASGQINLFGDAAAP--EPLPLPDVPDWPAFERLSFEAE 942

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
             +G++ + HPLD Y  +LR++G+      E+ A      ++LA  VV ++++ TR GSR+
Sbjct: 943  AVGYHLTAHPLDAYDTVLRRLGVVPSNLIEARAKAGIGRVKLAGAVVGRKERTTRTGSRM 1002

Query: 1016 GWVTFSEPAKEYEANFF 1032
             WV  S+ A  +E   F
Sbjct: 1003 AWVMLSDQAGGFEVTLF 1019


>gi|228471624|ref|ZP_04056398.1| DNA polymerase III, alpha subunit [Capnocytophaga gingivalis ATCC
            33624]
 gi|228277043|gb|EEK15729.1| DNA polymerase III, alpha subunit [Capnocytophaga gingivalis ATCC
            33624]
          Length = 1484

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1086 (32%), Positives = 553/1086 (50%), Gaps = 75/1086 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----- 61
            +S  F HL  HS +S+L+   S++++++  A +Q PA+A+TD  N+  A  F+++     
Sbjct: 252  QSAPFAHLHNHSQHSVLQSTASISDLVNAAAKEQMPAVALTDHGNMMGAFHFTKEVAKYN 311

Query: 62   ---------ACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
                     A   G       ++PIIGC+  +         +  KT       IVLL   
Sbjct: 312  KEAKAKNARAQEEGNAPTHTLLKPIIGCEFYVC------ENHLDKTKKDNGYQIVLLAKN 365

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
             EGYQ LI++ S  Y  +      RI    +Q    + +I L+G   G I        ++
Sbjct: 366  KEGYQNLIKMASIAYT-EGFYYVPRIDKEIVQRY-KDQVIALSGNLQGEIPSKILNQGNR 423

Query: 166  VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEED 224
             AE+ LL +K+LF D  Y+ L RH   D  R  + +++LA  H + LVATNN+ +++ +D
Sbjct: 424  QAEEALLWWKELFQDDFYIELMRHGQEDENRANTVLIELAKKHAIKLVATNNTYYINPKD 483

Query: 225  YEAHDVLMAVAHSTVV-------SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
              AHD+L+ V                       ++Y K+  +M  +F D+PEA+ +  EI
Sbjct: 484  ANAHDILLCVKDGEKQATSIGQGRGFRNGLPNEEYYFKSSEQMKELFKDIPEAILSIQEI 543

Query: 278  ARRCSFILQVHAPILPRFIEK------ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
              + +        +LP+F         +    +K E   LR+    G E           
Sbjct: 544  IDKITPYELARDILLPKFSIPKEFQVEDDPTGKKGENKYLRHLTYIGAEK-------RYK 596

Query: 332  YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
                + R+R+DFEL++I +  + GYFLIV DFI  A+   + VGPGRGS AGS  AY L 
Sbjct: 597  ELTDEIRERIDFELSIIEKTGYPGYFLIVEDFITAARNMGVSVGPGRGSAAGSAVAYCLG 656

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT+IDP+ + LLFERFLNPDR+SMPD DIDF  D R  V+ YV  KYG  +VAQI T+G+
Sbjct: 657  ITNIDPIAYDLLFERFLNPDRVSMPDIDIDFEDDGRGRVLDYVIGKYGANQVAQISTYGT 716

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-----------DSRFRE 500
            + AK+++RD  R L +P    D++ KL+PN     +      +            +  ++
Sbjct: 717  MAAKSSIRDTARVLDLPLKDADQIAKLVPNISLKKIFSLPDEELKEKVGSDFPKVTELKK 776

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
                     + ++ +  LEG  R+   HA G++I    ++  VP+     SDL VTQF+ 
Sbjct: 777  IAQGHDLAAKTVQQACILEGSVRNTGIHACGVIITPDDITNFVPVMLAKDSDLFVTQFDN 836

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLG 619
              +E AGL+K DFLGLKTLT+L+ ++  + +R     D+  IP DD  TY L     T+G
Sbjct: 837  SVVESAGLLKMDFLGLKTLTILKDAVSLIQKRHNITLDIEEIPLDDVPTYELFQRGETIG 896

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            IFQ ES GM++ +  ++P    D+IA+ +LYRPGP+D I  + +RK+GKE I      ++
Sbjct: 897  IFQYESPGMQKHMRELKPTVFGDLIAMNALYRPGPMDYIPSFIHRKHGKEPITYDLADME 956

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
              LK+T G+ +YQEQVM ++Q L+G++  EAD LR+AMGKK+K+ + + K +FI G  K 
Sbjct: 957  EYLKDTYGITVYQEQVMLLSQKLAGFTKGEADKLRKAMGKKLKDVLAEMKPKFIEGGGKK 1016

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G        I++    FA Y FNKSH+  YA I+YQTA++K +YP EF+AA ++  M+++
Sbjct: 1017 GHPAETLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKANYPAEFMAAVLSNNMNDI 1076

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA 858
            + I  F  +  +  I+++ P VN     F V  +  I + + A+KG+G      I+E   
Sbjct: 1077 KSISFFLSECHRMGIKVLSPDVNESEYKFTVNKEGAIRFGMGAVKGLGKAAVDTIVETRK 1136

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS--------LDNIQ 909
              P+ S+ D   R+D K  N++  ESLV AG  D F    R Q            L+ I 
Sbjct: 1137 SGPYKSVFDMVKRIDLKSANKKAFESLVLAGGFDSFPEVHRAQFFHQEPSENMVFLEKIL 1196

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +Y    +++  +   ++F     T   +  + K    +   +   E+ V+G Y SGHPLD
Sbjct: 1197 RYGAKAQESAKSIQLSLFGDSPETQFPEPKMPKTEEWSPMEKLHREKEVVGIYISGHPLD 1256

Query: 970  VYKPILRKMGIKGYEESV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            ++   L+ +  K   E            +R   ++   + K ++ G   G  T  + +  
Sbjct: 1257 IFHYQLKYLCNKEVIELAEGIERFENQEVRFGGIITKIEHKTSKTGKGWGLFTIEDYSGG 1316

Query: 1027 YEANFF 1032
             E   F
Sbjct: 1317 AEFRIF 1322


>gi|309812629|ref|ZP_07706373.1| putative DNA polymerase III subunit alpha [Dermacoccus sp. Ellin185]
 gi|308433324|gb|EFP57212.1| putative DNA polymerase III subunit alpha [Dermacoccus sp. Ellin185]
          Length = 1182

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1072 (34%), Positives = 552/1072 (51%), Gaps = 53/1072 (4%)

Query: 5    LEK-SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +   S SFVHL  H+ YS+L+GA  ++++  +      PAIA TD   LF A EF  K+ 
Sbjct: 1    MSSQSKSFVHLHNHTEYSMLDGAARIDDMFARAQEFGMPAIATTDHGYLFGAYEFWSKSR 60

Query: 64   AAGIQPIIGCQLDIDMQDN-----------LKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
               ++PIIG +  +    +                   +       + LL    EG   L
Sbjct: 61   KYDVKPIIGLEAYMTPGTHRTDKTRTTWGERGQEADDVSNRGLYTHMTLLAKNNEGMHNL 120

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
              + S+  L     +  R+    L   GT G+I  TG  SG I           A +   
Sbjct: 121  FRMGSQASLDQVYSKYPRLDRELLNAYGT-GIIGTTGCPSGEIQTRLRLGQYDKAREAAA 179

Query: 173  TFKKLFGD-RLYVNLQRHRGY---DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             F+ +FGD   Y  L  H      +R   S +++LA    LPL+ATN+  + ++ED   H
Sbjct: 180  EFRDIFGDGNFYCELMEHDLDVDIERRVRSDLLKLAKDLNLPLLATNDLHYTNKEDAVHH 239

Query: 229  DVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            D L+ +   + ++  +R +  + + YLK+  EM  +F D P+A +NT+ IA +C      
Sbjct: 240  DALLCINSGSRLTDPNRFKFGSHEFYLKSADEMRHLFRDHPDACDNTLLIAEQCEVSFTE 299

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                  R++ +      ++E +    +   GL  R  +G          Y      E +V
Sbjct: 300  GE---GRYMPRFPCPEGEDETSWFIKEVETGLRRRFPEGVPDYAVKQAKY------EQDV 350

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I    + GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD+DP+   L+FERF
Sbjct: 351  IIGKGYPGYFLVVADFINWAKRNGIRVGPGRGSGAGSMCAYAMGITDLDPVPHGLIFERF 410

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R SMPDFD+DF + RR EVIRYV +KYG +RV+ I+T+G+++AK A++D  R +  
Sbjct: 411  LNPERQSMPDFDVDFDERRRSEVIRYVVDKYGEDRVSYIVTYGTIKAKQAVKDASRVMDF 470

Query: 468  PYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKL 518
            P++  +++ K +P D     V L  + D+S         FRE   +DP+   + +    L
Sbjct: 471  PFAIGEQMTKAMPADVMGKGVPLAKMYDESHPRYAEGGEFRELIASDPTFKNIFDAGVGL 530

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R    HAAG+++   PL  ++P+ R ++    +TQF+    E  GL+K DFLGL+ 
Sbjct: 531  EGLKRQWGVHAAGVIMSSEPLIDVIPIMRRLQDGAVITQFDYPSCETLGLVKMDFLGLRN 590

Query: 579  LTLLQKSLDFLAQRGVKVDLSL---IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            LT+L  +L  +     +            D +TY LL    TLG+FQL+  GMRQ L  M
Sbjct: 591  LTILDDALKNIKANRDEDIDLDALSKDMTDAKTYDLLARGDTLGVFQLDGGGMRQLLRLM 650

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVI 689
            QPD  EDI A ++LYRPGP+  +    +  RKNGK++I  IHP     ++P+L  T G+I
Sbjct: 651  QPDNFEDISAALALYRPGPMGANAHTNFALRKNGKQQIDYIHPELTEALEPILNMTYGLI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            IYQEQVM+IAQ L+GY+L  AD+LRRAMGKK KE +D +   F  G   NG SK     +
Sbjct: 711  IYQEQVMEIAQKLAGYTLGNADLLRRAMGKKKKEVLDAEYVNFEKGMLDNGFSKESVQTL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            + +L  F+DY FNK+H AAY ++SY T ++K +YP E++AA +T   D+ +K   +  + 
Sbjct: 771  WSILLPFSDYAFNKAHTAAYGLVSYWTGYLKANYPAEYMAALLTSVRDDKDKSALYLNEC 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDF 868
            R   I+++PP VN    +F      I + L AI+ VG+     I+ A  +   F S EDF
Sbjct: 831  RHMGIKVLPPDVNESIGNFAAVGEDIRFGLEAIRNVGSNVVAAIIAAREEKGRFTSFEDF 890

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              +  +  LN+R +ESLV AGA D  G+ R  L+Q  ++        ++   +  +++FA
Sbjct: 891  LRKCPATVLNKRTVESLVKAGAFDDLGHQRQGLVQIHESYVDALIDEKRKEEHGQDSLFA 950

Query: 929  --HEKGTFSDKITLEKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
               +     +   L +      +   +   E+ +LG Y S HPL   +  L +       
Sbjct: 951  GFGDDAPGIEFAALPQIPPIEWDKQTKLAFEREMLGLYVSDHPLFGIEAALAQFSDTSVA 1010

Query: 985  ESV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +   A   G  + +A ++   Q K+T+KG      T  +     E  FFP
Sbjct: 1011 RLLAEDALPDGATVTIAGLITGLQIKRTKKGDLWAIATVEDMDGAIECLFFP 1062


>gi|217420148|ref|ZP_03451654.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 576]
 gi|217397452|gb|EEC37468.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 576]
          Length = 1234

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1046 (39%), Positives = 605/1046 (57%), Gaps = 38/1046 (3%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
              +   P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A
Sbjct: 59   APMSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEA 117

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              AGI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L 
Sbjct: 118  RDAGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLT 167

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +Q +    +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    
Sbjct: 168  NQYRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGF 227

Query: 183  YVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ LQR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++
Sbjct: 228  YIELQRYGQPGAEAYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILA 287

Query: 242  QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               R  R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   + 
Sbjct: 288  NPRRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDG 347

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357
              +    ++ L   +  GL+ RL Q    +         Y QRLDFE   I +M F GYF
Sbjct: 348  MSL----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYF 403

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPD
Sbjct: 404  LIVADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPD 463

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + K
Sbjct: 464  FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAK 523

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP  P   V++   + ++   +E    +  V +LL+++Q++EGL R+   HA G++I  
Sbjct: 524  LIPFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAP 583

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593
              L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +     
Sbjct: 584  GKLTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 643

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPG
Sbjct: 644  ENWSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPG 703

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+L
Sbjct: 704  PMDLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 763

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++
Sbjct: 764  RRAMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLA 823

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            Y TAW+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+    
Sbjct: 824  YYTAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAE 883

Query: 834  R-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                    I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++
Sbjct: 884  ADGKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMI 943

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AGA D    +R QLL S+    + A+    N       +F    G  + +  L      
Sbjct: 944  RAGAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAW 1000

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            +   R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + 
Sbjct: 1001 DDKRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRT 1057

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + T++G  +      +   + E   F
Sbjct: 1058 QMTQRGK-MVIALLDDGTGQCEVTVF 1082


>gi|182678571|ref|YP_001832717.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp. indica
            ATCC 9039]
 gi|182634454|gb|ACB95228.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp. indica
            ATCC 9039]
          Length = 1159

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 518/1060 (48%), Positives = 683/1060 (64%), Gaps = 50/1060 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAI-----------TDTNNLF 53
            +  S  F+HL VHS++SL EGA+ +  ++                        TDTNNLF
Sbjct: 1    MPGSVGFIHLHVHSAFSLREGAIKIEKLVKL-----------AAADAMPALALTDTNNLF 49

Query: 54   SALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
             ALEFS+K   +GIQPI G QL +D  D   M  +G+       ++VLL     GY  L+
Sbjct: 50   GALEFSEKLVKSGIQPIAGLQLTVDFGDGAAMAPRGEENGAGRANLVLLAQDEAGYVNLM 109

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             L SR +L         +    L     +GLI L+GG  GP+DRAF     + A  R   
Sbjct: 110  HLTSRAWLDPVPGDPPHVRFDQL-HGHADGLIALSGGPDGPLDRAFAAQRPEQAVLRAQH 168

Query: 174  FKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
               LF +RLYV LQRH    +R  E  ++ LAY   LPL ATN   F +  DYEAHD L+
Sbjct: 169  LAALFPNRLYVELQRHSLQAERSNEPLLLDLAYDRSLPLAATNEPYFAAASDYEAHDALL 228

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             +A   V+ +  R +++P+H LK R+EMV++F+DLPEA  NTVEIA RC++      PIL
Sbjct: 229  CIAEGAVLGEPQRRQLSPEHRLKTRTEMVALFADLPEATANTVEIAMRCAYRPLTRKPIL 288

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            PRF +    D   EE  ELR +A AGLE RLA    A G+   DYR RL FEL++I +M+
Sbjct: 289  PRFGDTGHAD---EEAKELRRQAEAGLEKRLAAHPPAPGFTEDDYRARLAFELDIIVKMQ 345

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFLIVADFI++AK  +IPVGPGRGSGAGS+ AYALTITD+DP+RF LLFERFLNP+R
Sbjct: 346  FPGYFLIVADFIKYAKSQDIPVGPGRGSGAGSLVAYALTITDLDPIRFGLLFERFLNPER 405

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPDFDIDFCQDRRDEVI YV+ +YG ++VAQIITFGS  A+  +R+VGR L+MP  QV
Sbjct: 406  VSMPDFDIDFCQDRRDEVIAYVRRRYGEDKVAQIITFGSFLARGVMRNVGRVLEMPLGQV 465

Query: 473  DRLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            D+L KL+P +PA PVS  QAI  + R +EA  ++P V R+L I++ LEGLY +ASTHAAG
Sbjct: 466  DKLAKLVPQNPAAPVSLKQAIEGEPRLQEAASSEPRVARMLTIAETLEGLYSNASTHAAG 525

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            IVIGDRPL  LVP+YRD +SD+P TQFNMKW+E AGL+KFDFLGLKTLT L   +  LA+
Sbjct: 526  IVIGDRPLEHLVPLYRDPKSDMPATQFNMKWVEPAGLVKFDFLGLKTLTTLSTCVKLLAK 585

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            RG+ VDL+ IP DD +TY +L    T+G+FQLES+GMR+AL  M+ D  EDIIALV+LYR
Sbjct: 586  RGIIVDLAKIPLDDQKTYAMLGRGETVGVFQLESAGMRKALVEMRADHFEDIIALVALYR 645

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+ NI  Y   K G+EK   IHP I+ +LKET GVIIYQEQVMQIAQ+LSGYSL EAD
Sbjct: 646  PGPMANIPTYCAVKLGEEKADYIHPKIEHILKETFGVIIYQEQVMQIAQVLSGYSLGEAD 705

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKKIK EMD Q+ RF++G+   G++K  A  IF+LLAKFADYGFNKSHAAAYA+
Sbjct: 706  LLRRAMGKKIKAEMDAQRSRFVTGSVDRGLTKKQADEIFDLLAKFADYGFNKSHAAAYAL 765

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            I+YQTAW K ++PVEFLAASMTL+  N +K+ +FC +AR+  I +  P +    VDF V 
Sbjct: 766  IAYQTAWFKANHPVEFLAASMTLDKSNTDKLAEFCNEARRLGIPVDRPCIQKSGVDFDVA 825

Query: 831  --GDNR-------------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                               I Y+L+AIKGVG+  A  ++ A A + F  L DF  R++ +
Sbjct: 826  LENKGAGQESKESENANLHIRYALSAIKGVGSAQAEALVAARAGRSFKDLSDFTHRLNPR 885

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            ++N+R+LE LV AGA D     R ++  +++ +   A    +        +F     +  
Sbjct: 886  EINKRMLECLVAAGAFDTLDKDRAKIFATIETLLAMANRRCEEEAAGQSVLFGGPAAS-- 943

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--- 992
              I   +      + R + E   +GF+ SGHPLD Y  IL ++ ++ +      ++    
Sbjct: 944  -AIIFPQTDPWPLAERLQREFDAVGFFLSGHPLDGYASILSRLKVQRWATFARQVKQGQA 1002

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  RLAA V+ +++++T+ G+++G V  S+ + +YEA  F
Sbjct: 1003 SAARLAATVLDRKERRTKSGTKMGIVQLSDQSGQYEAILF 1042


>gi|229817355|ref|ZP_04447637.1| hypothetical protein BIFANG_02617 [Bifidobacterium angulatum DSM
            20098]
 gi|229785144|gb|EEP21258.1| hypothetical protein BIFANG_02617 [Bifidobacterium angulatum DSM
            20098]
          Length = 1184

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/1070 (31%), Positives = 536/1070 (50%), Gaps = 52/1070 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S +FVHL  H+ YSLL+GA  +  +    A    PA+ ITD  N+  A E       
Sbjct: 1    MSDSGNFVHLHNHTHYSLLDGASKIPELAKYAADLSMPAVGITDHGNMHGAYEMYTNCVK 60

Query: 65   AGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
             G++PIIG +  +  +                     +    +  + L     EG   LI
Sbjct: 61   VGVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTLWAENDEGLVNLI 120

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +  S   L  + ++  R+    L    ++G+I  +G  SG I           A +    
Sbjct: 121  KASSVANLEGRVQRYPRMDKEVLSTY-SKGVICGSGCPSGIIQTRLALGQFDEALRAAGE 179

Query: 174  FKKLFG-DRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             + +FG D  ++ +  H      R    ++++A   + PL+ATN+S ++  ED EA D +
Sbjct: 180  LQDIFGKDNFFIEIMDHGLTIENRNIPGLLEIAKKLDAPLLATNDSHYVHAEDAEAQDAM 239

Query: 232  MAVAHSTVVSQKDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + +   + +   +R +     Y      EM  IF + P A +NT+EIA RC+ +   H  
Sbjct: 240  LCINSGSHLDDPNRFKFDGTGYYLKPAEEMREIFKEFPGACDNTLEIAERCNVMFDDHED 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                      +    +E +    K   GLE R            ++  ++ D+E  VI +
Sbjct: 300  GAFMPQFDCPEG--WDEASLFLKKVEEGLERRYDNNV------PEEVSKQADYECGVICQ 351

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M+F GYFL+VAD+IQWAK + I VGPGRGS AGS+ AYA+ IT++DPL+  L+FERFLNP
Sbjct: 352  MQFCGYFLVVADYIQWAKDHGIMVGPGRGSAAGSMVAYAMGITELDPLKHGLIFERFLNP 411

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+S+PD D+DF  + R  VI Y   KYG ++VAQ + +G ++ K AL+D  R +   ++
Sbjct: 412  ERVSLPDIDVDFDPEGRLHVIDYCGEKYGRDKVAQCVIYGVIKTKQALKDSARIMGYDFA 471

Query: 471  QVDRLCKLIPNDPAHPV---------SLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
              D++ K +P                + +  A+   FRE   +DP   ++++ ++ +EGL
Sbjct: 472  MGDKVTKALPPSKNGKDASLKEIFDPTSKHYAEAREFRELYESDPDAHKIIDKAKTIEGL 531

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R    HA   ++G  P++   P+ +    +   T F     E  GL+K DFLGL  LT+
Sbjct: 532  IRQTGVHACATIMGSEPITDTSPLLQR-VDNTVTTTFEYHTCETLGLVKMDFLGLSNLTV 590

Query: 582  LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +Q +L  +       VD + IP DD ETY LL    TLG+FQL+S GMR  L+ ++PD  
Sbjct: 591  IQDTLKNIVANGKDPVDYTKIPLDDKETYQLLARGDTLGVFQLDSDGMRALLKSLKPDNF 650

Query: 641  EDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQ 694
             DI AL++LYRPGP+D      Y  RKNG +KI  IHP ++  LK+    T G+I+YQEQ
Sbjct: 651  NDISALIALYRPGPMDMDSHNNYAKRKNGLQKIEPIHPELEEPLKQVLDETYGLIVYQEQ 710

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            V   A++L+GYSL +ADVLRRAMGKK  E + K+K  F  G  ++G S+  A  ++++L 
Sbjct: 711  VQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFQGMKEHGYSEEAAQAVWDVLV 770

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +    DN +K   +  +AR+  I
Sbjct: 771  PFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGTKDNKDKTALYLGEARRMGI 830

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRV 872
            Q++ P VN     +    + + + L AI+ VG      I+         F +  DF  RV
Sbjct: 831  QVLSPDVNESVYAYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGKRGKFVNFMDFVRRV 890

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
                LNRR++ESL+ AGA D    +R  L Q  +   +    +++       ++F+    
Sbjct: 891  PLSALNRRLVESLIKAGAFDSIDPNRRALYQIHETAIESVVGLKRKEAEGQFDLFSDMDD 950

Query: 933  TFSDK------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
                       +T+      +   +   E+ +LG Y S HPL     +L  +        
Sbjct: 951  ADEQDVMGDASVTVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMTAVLAGLREMSIAHL 1010

Query: 987  VATIR----GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   +    G  + +A +V +  ++ +++G+    VT  +     +  FF
Sbjct: 1011 IDRAKTMGEGQQVTIAGLVTNVDRRVSKRGNAWAIVTVEDLESSIQCMFF 1060


>gi|254513858|ref|ZP_05125919.1| putative DNA polymerase IIIalpha subunit subfamily [gamma
            proteobacterium NOR5-3]
 gi|219676101|gb|EED32466.1| putative DNA polymerase IIIalpha subunit subfamily [gamma
            proteobacterium NOR5-3]
          Length = 1168

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1046 (39%), Positives = 599/1046 (57%), Gaps = 42/1046 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              FVHL+VHS YSL +G + + ++  ++A  + PA+A+TD  N +  ++F + A +AG++
Sbjct: 2    SEFVHLRVHSEYSLKDGLVRIKSLAARVAELEMPAVAVTDVCNFYGLIKFHKAAVSAGVK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  + +                     + LLV   EGY  L  L+SR Y   Q    
Sbjct: 62   PIFGADVWVTDS----------LKSDDAYPLCLLVMNPEGYLNLTRLLSRAYREGQTLDG 111

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+   WL E G EGL+ L+ G++G + +A       +A +R+     +F  R Y+ L R
Sbjct: 112  PRVLWEWLSEAG-EGLLALSCGAAGEVGQALVNEKMDLARQRMERCLAVFPGRFYLELHR 170

Query: 189  HRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                 D       + LA     P+VATN+  F+   ++EAH+  + +A S V+    R R
Sbjct: 171  TGRVGDEEHVHAALDLATQFNCPVVATNDVRFIDASEFEAHEARVCIAESRVLDDPRRQR 230

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              + + YL++  EM  +F D+PEALENT+ IARRCS  +++    LP +   +       
Sbjct: 231  RYSQEQYLRSSEEMQELFEDIPEALENTLAIARRCSMEMELGRVCLPEYPVPDGM----T 286

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQ----DYRQRLDFELNVIARMKFSGYFLIVAD 362
             +   R  A  GL+ RL    I +  +AQ    +YR+RLDFEL+ I  M F GYFLIV D
Sbjct: 287  MDTFFRESAHRGLDERLQTLQIHRRENAQALEREYRERLDFELDTIIAMGFPGYFLIVMD 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK++ IPVGPGRGSGAGS+ AY+L+ITD+DP+ + LLFERFLNP+R+SMPDFD+DF
Sbjct: 347  FIRWAKEHGIPVGPGRGSGAGSLVAYSLSITDLDPIEYELLFERFLNPERVSMPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RRDEVI YV + YG E V+QIITFG+L AKA +RDV R     Y   DRL K+IP +
Sbjct: 407  CMERRDEVIDYVADLYGREAVSQIITFGTLAAKAVVRDVARVQGKSYGLGDRLSKMIPFE 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +  +AI  +   ++    D     + +++ +LEG+ R+   HA G+VI    L+  
Sbjct: 467  VGMTL-QKAIEQEESLQQFLRDDGEAQEIWDMAVQLEGITRNVGKHAGGVVIAPSELTDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-----AQRGVKVD 597
              +Y D      VTQF+   +E AGL+KFDFLGL+TLT++  +   +      Q    +D
Sbjct: 526  SALYCDGEGAGLVTQFDKNDVEDAGLVKFDFLGLRTLTIIDWAQGMINEIRARQDEPPLD 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++ IP DDH ++ LL +  T  +FQLES GM++ +  ++PDC EDIIALV+LYRPGP+ +
Sbjct: 586  INQIPLDDHASFELLRSAETTAVFQLESRGMKELIARLRPDCFEDIIALVALYRPGPLQS 645

Query: 658  IVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V       +   K         H L+ P+L+ T G+I+YQEQVMQIAQ+L+GY+L  A
Sbjct: 646  GMVDNFIDRKHGREKVSYPDAEYQHELLKPVLEPTYGIILYQEQVMQIAQILAGYTLGGA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM KQ+  F +GA+  G+   +A  +F+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DLLRRAMGKKKPEEMAKQRSVFAAGAAAKGVDADLATKLFDLVEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++SYQTAW+K+HYP  F+AA M+ E+DN +KI  F ++ R+  + +  P VN     F V
Sbjct: 766  LVSYQTAWLKSHYPAAFMAAVMSSELDNTDKIVVFIEECRRMGLTVRLPDVNEGRYMFTV 825

Query: 831  GD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             +   I Y L AIKG+G      ++E+  +  PF  L DFC+R D +KLNR+ LE+LV +
Sbjct: 826  SEAGEIVYGLGAIKGLGEGPVSGLLESREEHGPFHDLFDFCARTDPRKLNRKALEALVRS 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH----EKGTFSDKITLEKFS 944
            GA D  G  R  LL  +D+  + A+    NR     ++F       +        L    
Sbjct: 886  GAFDSLGTDRWILLAGIDDALRAAEQNAANRDAGMVDLFGETVQASREQGDPYAELRHIR 945

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                  R + E+  LG Y +GHP+D  +  +R+   +   +     RG N R+A +++S 
Sbjct: 946  PWTDRERLQGERDTLGLYVTGHPIDSCEDEIRRFVPQRLADLRPDNRG-NCRVAGLILSM 1004

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            +  K+ +GS +      + +   EA 
Sbjct: 1005 RAMKSARGS-MAVFVLDDRSARLEAT 1029


>gi|227500122|ref|ZP_03930193.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
 gi|227217837|gb|EEI83134.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
          Length = 1150

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1052 (34%), Positives = 585/1052 (55%), Gaps = 48/1052 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VH+ YSLL+G   ++ +LD+       +IAITD  +++ A+EF ++A    I+PI
Sbjct: 5    FTHLHVHTEYSLLDGFSRIDLLLDRAKELGMESIAITDHGSMYGAIEFYKQAKKRDIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ +  +D+    +  +        ++LL  + EGY+ LI++VS  Y ++      R
Sbjct: 65   IGCEVYVSEKDHKIKDSTNR----RYYHLILLAKSKEGYKNLIKIVSEAY-VNGFYYKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +   ++++     +I L+   +G +++    N  + A+K  L +++ FG    ++ LQ H
Sbjct: 120  VSFDFIKK-HAGDIIALSACLNGEVNQKILENDYEGAKKAALNYEEAFGKGNYFLELQNH 178

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               +     +++ ++     +PLVATN+  ++++ED+   DVL+ +    ++  +DR R+
Sbjct: 179  GIKEESLVNAKLNRIHQETAIPLVATNDVHYVNKEDFYYQDVLLCIQTGKLIKDEDRMRM 238

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + + YLK+  EM  IF+D  +AL NT  IA +C      H P LP F +    +     
Sbjct: 239  PSSEFYLKSYEEMEEIFADYEDALTNTKLIADQCKLEFTFHEPHLPYFSK---VEEGLSN 295

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+     GL           G   ++ R R D E+NVI+ M +  YFLIV DF+++A
Sbjct: 296  LEYLKKLVDQGLIK-------KYGKIDKEIRSRADMEINVISSMGYVDYFLIVWDFVRYA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            + N+I VGPGRGS AGS+ +YAL IT IDP++++L+FERFLNP+R+SMPD DIDF    R
Sbjct: 349  RDNDIAVGPGRGSAAGSIVSYALDITQIDPIKYNLIFERFLNPERVSMPDIDIDFDYVLR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D V+ YV + YG + V+QIITFG +QA+ A+RDVGR L + Y++VD++ KLIP+     +
Sbjct: 409  DRVVDYVNDVYGRDHVSQIITFGRMQARNAIRDVGRVLDISYAKVDKIAKLIPSTLGMTI 468

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A    S+F+E   +D    RL++ ++KLEGL RH S HAAG+VI    L+ ++P+  
Sbjct: 469  D-KAFEASSKFKEIYESDLEGKRLIDTARKLEGLPRHTSIHAAGVVISKEALTDIIPLAL 527

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
               +D  VTQF+M  IE+ GL+K DFLGL+ LT+++ ++  + + RG+ VDL  I  +D 
Sbjct: 528  S--NDQLVTQFDMTEIEELGLLKMDFLGLRNLTVIKNTIKDVKKNRGIDVDLGKIDVNDK 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +         T+GIFQ ES+GMR  L+ ++P   +D+IA  SL+RPGP+D I  Y + KN
Sbjct: 586  KVIEQFNKAKTIGIFQFESAGMRNFLKNLRPTVFDDLIAANSLFRPGPMDEIPKYIHNKN 645

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              + +  I P + P+L  T G+I+YQEQVMQI Q L+GYSL EAD LRRAM KK    M+
Sbjct: 646  NPKDVSFITPALKPILDVTYGIIVYQEQVMQIVQKLAGYSLGEADNLRRAMSKKKMAVME 705

Query: 727  KQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            + +E FI             G  +NG+ +  A  I++ +  FA Y FNKSH+AAY++++ 
Sbjct: 706  ENREIFIHGRLDEKGEVEIAGCVRNGVDELSANQIYDEMISFAKYAFNKSHSAAYSLVAV 765

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K +YP E++A  ++  MD   K+  +  + +   I+++PP VN    +F+V + R
Sbjct: 766  QTAYLKHYYPEEYMANLISSVMDQSTKLYLYVNETKALGIEVLPPDVNKSLAEFRVEEGR 825

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR---VDSKKLNRRVLESLVFAGA 890
            I + L+AIK +G      I+ A      F++ +DF  R   VD + LN++ +ESL+ AGA
Sbjct: 826  IIFGLSAIKNLGINMISAIVRARDKGGKFENFKDFLQRVDEVDQRALNKKGIESLIKAGA 885

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF--SDKITLEKFSVENS 948
             D  GY+R  L+   +          K       N+          SD + ++  +    
Sbjct: 886  FDRMGYNRSSLMAIYEKAMASVSENRKVNLKGQLNLLDDFSSVSKKSDDVKIQNINEYPK 945

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG------YEES-VATIRGNNIRLAAMV 1001
              + + E+ VLGFY S HPL      L               +  +  +    + +A ++
Sbjct: 946  KTKLKLEKEVLGFYISDHPLSDLADRLNDFVNFTSDYKDNLSDLEIQMLDKKFVSMAGVI 1005

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +K +  T+K   + +    +     E   FP
Sbjct: 1006 TNKSEIMTKKKQLMSFANLEDMYGSIEMVIFP 1037


>gi|134281214|ref|ZP_01767923.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 305]
 gi|226195389|ref|ZP_03790978.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pakistan
            9]
 gi|134247520|gb|EBA47605.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 305]
 gi|225932591|gb|EEH28589.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pakistan
            9]
          Length = 1234

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1046 (39%), Positives = 605/1046 (57%), Gaps = 38/1046 (3%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
              +   P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A
Sbjct: 59   APMSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEA 117

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              AGI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L 
Sbjct: 118  RDAGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLT 167

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +Q +    +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    
Sbjct: 168  NQYRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGF 227

Query: 183  YVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ LQR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++
Sbjct: 228  YIELQRYGQPGGEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILA 287

Query: 242  QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               R  R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   + 
Sbjct: 288  NPRRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDG 347

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357
              +    ++ L   +  GL+ RL Q    +         Y QRLDFE   I +M F GYF
Sbjct: 348  MSL----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYF 403

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPD
Sbjct: 404  LIVADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPD 463

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + K
Sbjct: 464  FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAK 523

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP  P   V++   + ++   +E    +  V +LL+++Q++EGL R+   HA G++I  
Sbjct: 524  LIPFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAP 583

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593
              L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +     
Sbjct: 584  GKLTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 643

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPG
Sbjct: 644  ENWSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPG 703

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+L
Sbjct: 704  PMDLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 763

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++
Sbjct: 764  RRAMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLA 823

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            Y TAW+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+    
Sbjct: 824  YYTAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAE 883

Query: 834  R-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                    I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++
Sbjct: 884  ADGKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMI 943

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AGA D    +R QLL S+    + A+    N       +F    G  + +  L      
Sbjct: 944  RAGAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAW 1000

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            +   R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + 
Sbjct: 1001 DDKRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRT 1057

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + T++G  +      +   + E   F
Sbjct: 1058 QMTQRGK-MVIALLDDGTGQCEVTVF 1082


>gi|14194701|sp|Q9XDH5|DPO3A_THEAQ RecName: Full=DNA polymerase III subunit alpha
 gi|116667773|pdb|2HPI|A Chain A, Eubacterial And Eukaryotic Replicative Dna Polymerases Are
            Not Homologous: X-Ray Structure Of Dna Polymerase Iii
 gi|116667774|pdb|2HPM|A Chain A, Eubacterial And Eukaryotic Replicative Dna Polymerases Are
            Not Homologous: X-Ray Structure Of Dna Polymerase Iii
 gi|5531686|gb|AAD44403.1| DNA polymerase III [Thermus aquaticus]
          Length = 1220

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1096 (38%), Positives = 602/1096 (54%), Gaps = 82/1096 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAA----DQQPAIAITDTNNLFSALEFSQ 60
            +     F HL  H+ +SLL+GA  L ++L  +      D  PA+A+TD  NLF A+EF +
Sbjct: 1    MGSKLKFAHLHQHTQFSLLDGAAKLQDLLKWVKETTPED--PALAMTDHGNLFGAVEFYK 58

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            KA A G++PIIG +  +  +       +GK        + LL     GYQ L+ L SR Y
Sbjct: 59   KATAMGVKPIIGYEAYVAAESRFDR-KRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAY 117

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            L +   +  RI    L+E   +GLI L+G     I +    +   +AE RL     +FGD
Sbjct: 118  L-EGFYEKPRIDREILRE-HAQGLIALSGCLGAEIPQFILQDRLDLAEARLNEDLSIFGD 175

Query: 181  RLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            R ++ +Q H   ++ + +QV+ + A  + L +VATN+  ++ +ED  AH+VL+A+   T 
Sbjct: 176  RFFIEIQNHGLPEQKKVNQVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTT 235

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIF----SDLPEALENTVEIARRCSFILQVHAPILPRF 295
            +   +R R   D +     E +           E  +NTVEIAR C   L +   ++ R 
Sbjct: 236  LDDPERWRFPCDEFYVKTPEEMRAMLPEAEWGDEPFDNTVEIARMCDVDLPIGDKMVYRI 295

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA--------------------- 334
              +      + E   LR     GL  R         Y                       
Sbjct: 296  -PRFPLPEGRTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLGTMPPHGDERALAEAL 354

Query: 335  --------------------------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
                                      +    R  +EL+VI RM F GYFLIV D+I WA+
Sbjct: 355  ARVEEKAWEELRKRLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWAR 414

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             + + VGPGRGS AGS+ AYA+ IT+IDPLRF LLFERFLNP+R+SMPD D DF    RD
Sbjct: 415  GHGVSVGPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERD 474

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI+YV+ +YG ++VAQI TFGSL +KAAL+DV R   +P+ + + L KLIP     P  
Sbjct: 475  RVIQYVRERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKP 534

Query: 489  -LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +AI      R     D  + +++E++ +LEGL RHAS HAAG+VI   PL+ LVP+ R
Sbjct: 535  LQEAIQVVPELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMR 594

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
            D +   PVTQ++M  +E  GL+K DFLGL+TLT L ++   + + +GV++D   +P DD 
Sbjct: 595  D-QEGRPVTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKESKGVELDYDRLPLDDP 653

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T+ LL+   T G+FQLES GM   + G++P  +EDIIALVSLYRPGP+++I  Y  R +
Sbjct: 654  KTFELLSRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRHH 713

Query: 667  GKEKIVS---IHPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            G+E +      H    + P+L ET G+ +YQEQ+MQIA  ++GYSL EAD+LRRAMGKK 
Sbjct: 714  GQEPVSYAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKR 773

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             EEM K +ERF+ GA + G+ +  A  +F++L  FA+YGFNKSHAAAY+++SYQTA++K 
Sbjct: 774  VEEMQKHRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKA 833

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEF+AA +++E  + +K+ ++ +DAR   I ++PP VN    DFKV    I + L+A
Sbjct: 834  HYPVEFMAALLSVERHDSDKVAEYIRDARALGIPVLPPDVNRSGFDFKVVGEEILFGLSA 893

Query: 842  IKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +K VG   AR I+E      PF SL DF  R+  + +N+R LESLV AGALD FG  R +
Sbjct: 894  VKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALDAFG-DRAR 952

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            LL SL+ + ++A    +   +    +FA  +     +  L + S  +       E+  LG
Sbjct: 953  LLASLEPLLRWAAETRERGRSGLVGLFAEVE-----EPPLVEASPLDEITMLRYEKEALG 1007

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             Y SGHP+  Y P LR++     EE             + L+ MV    +K TR G  + 
Sbjct: 1008 IYVSGHPVLRY-PGLREVASCTIEELSEFVRELPGKPKVLLSGMVEEVVRKPTRSGGMMA 1066

Query: 1017 WVTFSEPAKEYEANFF 1032
              T S+     E   F
Sbjct: 1067 RFTLSDETGALEVVVF 1082


>gi|319763344|ref|YP_004127281.1| DNA polymerase iii, alpha subunit [Alicycliphilus denitrificans BC]
 gi|317117905|gb|ADV00394.1| DNA polymerase III, alpha subunit [Alicycliphilus denitrificans BC]
          Length = 1182

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1057 (38%), Positives = 589/1057 (55%), Gaps = 59/1057 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   ++  +   A D QPA+A+TD NNLF A++F ++    G++PI
Sbjct: 2    FVHLRLHTEFSVVDGTTRIDEAVKAAAKDGQPALAVTDLNNLFGAVKFYKEGRGKGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++                    +VLLV   +GY  L EL++R +  +  K    
Sbjct: 62   VGAEVCLE-----------GDAGAPPSRMVLLVQNRQGYLNLSELLTRAWTRNVVKNLPL 110

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
                WL E+  EGLI+L G  +GP+ +A        A    L    +F  R Y+ +QR  
Sbjct: 111  CTWDWLAEL-NEGLIVLAGAQAGPVGQALMKGDDDGAAAVALRLAGIFPHRFYIEIQRAG 169

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
            R  D    +  VQLA   +LP+VAT+   F + + YEAH+  + +A   +++ + R  R 
Sbjct: 170  RADDEAHVTTAVQLAARLQLPVVATHPVQFATADGYEAHEARVCIAEGEILANQRRVRRF 229

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + Y K+ +EM ++F+D+P A+ NT+EIA+RC+  L +  P LP F       I    E
Sbjct: 230  TREQYFKSGAEMQALFADVPSAIANTLEIAKRCNLTLVLGKPQLPDFPTPGGMAI----E 285

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R  +  GL+ RL      +    +    Y +RL+FEL  I +M F GYFLIV DFIQ
Sbjct: 286  EYFRVASYDGLKERLLHLFPDEAERERQRLRYEERLEFELGTILKMGFPGYFLIVGDFIQ 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N  PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ 
Sbjct: 346  WAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQA 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR + M Y+  D + KL+P  P  
Sbjct: 406  NRDRVIDYVKEKYGKDAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGQ 465

Query: 486  PVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
              +                A+  +    E    +  V  ++E++Q+LEG+ R+   HA G
Sbjct: 466  TYTLAYPPEPKKEGDKNNYALELEPMLYERVRKEEDVRTIIEMAQQLEGMTRNIGMHAGG 525

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            ++I    L+   P+Y+   S+  V+Q++   +E  GL+KFDFLGL TLT+L+ + DF+  
Sbjct: 526  VLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIARDFIRA 585

Query: 592  RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R           +P DD  TY L     T  +FQ ES GM+  L+  +P  +ED+IAL +
Sbjct: 586  RHKGQENFAFENVPLDDAPTYRLFADGMTEAVFQFESRGMQGMLKEARPSRLEDLIALNA 645

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  + NRK+GKE +   HPL++P+L ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 646  LYRPGPMDLIPTFVNRKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM + +  F  GA++ GIS+  A  +F+L+ KFA YGFNKSHAAA
Sbjct: 706  GADMLRRAMGKKKPEEMAEHRLIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHAAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTPCVD 827
            Y++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA +   I   PP +N     
Sbjct: 766  YSLLAYHTGWLKVHYTAEFYCANMTVEMDDTDKLKVLYEDAVKHFGITFEPPDINRGNYR 825

Query: 828  FK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKK 876
            F+ V D  I Y L A+KG G      I+ A              PF SL DFC RVD  +
Sbjct: 826  FEPVTDKVIRYGLGAVKGTGQQAIEAIVAAREGQGVGPQGGTRGPFKSLFDFCVRVDRSR 885

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKG 932
            +N+R +E+L+ AGA D    +R  L+ S+D    +A     N       +F        G
Sbjct: 886  INKRTVEALIKAGAFDALHLNRAALVASIDRAFDFANAQLAN--ANQGGLFDMMGDDAIG 943

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
            + + +  L + +      R   E+  +GFY SGH  D  +  +R+       E   +   
Sbjct: 944  SSTQEPDLVEATPWGIKERLMQEKTAVGFYLSGHLFDEVQQEVRRFVRTPMAELADSRET 1003

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                LA +V   +    ++G         + +   EA
Sbjct: 1004 Q--VLAGIVGDCRVITGQRGKL-ALFKLDDKSGVIEA 1037


>gi|296136875|ref|YP_003644117.1| DNA polymerase III, alpha subunit [Thiomonas intermedia K12]
 gi|295796997|gb|ADG31787.1| DNA polymerase III, alpha subunit [Thiomonas intermedia K12]
          Length = 1146

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1036 (39%), Positives = 592/1036 (57%), Gaps = 32/1036 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +VHL+ H+ YS+++GAL +++++     D Q A+AITD NNLF+ + F + A  AG++PI
Sbjct: 3    YVHLRTHTEYSIVDGALRVDDMVPAAVRDGQGALAITDFNNLFATVRFYKAALDAGVKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC + +                     ++LLV    GY  L +L+SR +L +Q +    
Sbjct: 63   IGCDVLL----------GSARHPGQFTRLLLLVQNRTGYLNLCDLLSRAWLDNQQRGRAV 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   WL+    EGLI L+G   G I +A     +  A         +F  R Y  LQR  
Sbjct: 113  VQWEWLEGGLAEGLIALSGAHEGAIGQALLQGDTATARDLTRQHAAVFEGRFYFELQRGG 172

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
                       V LA    LP+VAT+   FL  +D++AH+  + +A    +    R R  
Sbjct: 173  HAACEPHVQAAVPLAAELGLPVVATHPVQFLKADDFDAHEARVCIAEGETLGNPRRQRKF 232

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T   Y K+++EM ++F+D+P AL NTV IA+RC+ +L +  P LP F   E         
Sbjct: 233  TAQQYFKSQAEMEALFADVPSALANTVAIAQRCNLVLDLGKPQLPLFPTPEG----LTPA 288

Query: 309  NELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R +A  GLE RL      A  +      Y+QRL++EL +IA+M F GYFLIVADFI 
Sbjct: 289  KFFRQQAQEGLEQRLAVLYPQADEREAARPRYQQRLEYELGIIAKMGFEGYFLIVADFIN 348

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N  PVGPGRGSGAGS+ AY+L ITD+DPL ++LLFERFLNP+R+SMPDFDIDFCQ+
Sbjct: 349  WAKNNGCPVGPGRGSGAGSLVAYSLRITDLDPLEYALLFERFLNPERVSMPDFDIDFCQE 408

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV+ KYG E V+QI TFG++ A+AA+RDVGR L + Y+  D + KLIP  P  
Sbjct: 409  NRDRVIDYVKEKYGVEAVSQIATFGTMAARAAVRDVGRVLDLSYTFCDGIAKLIPAKPGQ 468

Query: 486  PVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             +++   +  +    +    +  V +LL+++Q+LEGL R+   HA G++I    L+   P
Sbjct: 469  HITIADALKQEPLLAQRYEEEEEVRQLLDLAQQLEGLPRNIGMHAGGVLIAPGKLTDFCP 528

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---VDLSLI 601
            +Y    S   V+QF+   +E AGL+KFDFLGL TLT+L+     + +         L  I
Sbjct: 529  LYAQPGSTDAVSQFDKDDVEAAGLVKFDFLGLATLTILELGAQLIRRNHPDRADFKLEDI 588

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD ++Y L+    T+ +FQLES GM+  L   +PD  EDIIALV+LYRPGP+D I  Y
Sbjct: 589  PLDDPKSYKLMAKGDTVAVFQLESRGMQGMLRDAKPDRFEDIIALVALYRPGPMDLIPTY 648

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK GKE +V   P +  +L+ET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAMGKK 
Sbjct: 649  CARKAGKEDVVYPDPRMASVLEETYGIMVYQEQVMQVAQVIGGYSLGGADLLRRAMGKKK 708

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             EEM + +  F  GA+KNGI    A  IF+L+ KFA YGFNKSHAAAYA+++ QTAWMK 
Sbjct: 709  PEEMAQHRGIFAEGAAKNGIKPEKANEIFDLMEKFAGYGFNKSHAAAYALLAVQTAWMKA 768

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLA 840
            HYP EFLAA+M++ +D+ +K+K   +DA+   I ++PP VN     F   D   I Y+L 
Sbjct: 769  HYPAEFLAANMSIALDDTDKLKILVEDAQARGINVLPPDVNASQWRFDPVDSKTIRYALG 828

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIKG G      ++ A  ++PF SL DF  RVD  +LN+RVLE+L  AGA D     R  
Sbjct: 829  AIKGNGQAAVEAMIAARQERPFTSLFDFAERVDRTRLNKRVLEALAKAGAFDSLHPERAA 888

Query: 901  LLQSLDNIQKYA-QWVEKNRTNKHENIFAHEKGT----FSDKITLEKFSVENSSVRFENE 955
            ++ +++    YA Q     +     ++FA +        + +  L +    +   +   E
Sbjct: 889  VMAAVETAMDYATQREAARQQAGLFDLFAADAADGGHNPAHEPRLPEVEPWDLRTKLSFE 948

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  +G+Y SGH  D     +R+       + V +     + +A +    +  ++++G RI
Sbjct: 949  KTAIGYYLSGHLFDASAEEVRRFAPTALMDLVDSRD--PVLIAGIAAGVRLVQSQRG-RI 1005

Query: 1016 GWVTFSEPAKEYEANF 1031
              +   + +   E   
Sbjct: 1006 AILALEDRSGAMEIVI 1021


>gi|326404871|ref|YP_004284953.1| DNA polymerase III alpha subunit [Acidiphilium multivorum AIU301]
 gi|325051733|dbj|BAJ82071.1| DNA polymerase III alpha subunit [Acidiphilium multivorum AIU301]
          Length = 1139

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 476/1037 (45%), Positives = 658/1037 (63%), Gaps = 27/1037 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL+VHS+YSL EGA+  + I      +  PA+AITDT+NLF ++EFSQ    
Sbjct: 1    MPHA-DFVHLRVHSAYSLSEGAIKPDKIATLARDNAMPAVAITDTSNLFGSIEFSQACMG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPI+GCQ+ +   D  ++             +VLL   A G+  L +L SR +L  +
Sbjct: 60   KGVQPIVGCQIGLARTDLPRLPPDP---------LVLLAKDATGFANLSKLSSRSFLDTE 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 +I L  L++   EGL +LTGG  GP+ R         A + L    + F DRL V
Sbjct: 111  PGLRPQISLDTLRD-HHEGLFLLTGGRFGPVGRLLGDGQRPEAARLLAALAETFPDRLAV 169

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L+RH    +R  E  ++ LA    LPLVATN   F +E  +EAHD L+ +A   V+S+ 
Sbjct: 170  ELERHDLPTERAVEPGLITLADEAGLPLVATNECFFATETMHEAHDALLCIAEGRVLSEA 229

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            +R RVTP H+ K  +EM   F+DLP+A +NT+ IARRC+       P+LP   +      
Sbjct: 230  ERRRVTPHHWFKPAAEMRRRFADLPDACDNTLAIARRCAIAAPTRKPLLPICPKVRD--- 286

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E   LR  A  GL +RLA         A+ YR+RL  EL +I +M F GYFLIVADF
Sbjct: 287  GATEAETLRAMAEEGLALRLAAMNADAATAAK-YRERLALELGIIEQMGFPGYFLIVADF 345

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK   IPVGPGRGSGAGS+ A+AL ITDIDP+ F+LLFERFLNP+R+SMPDFDIDFC
Sbjct: 346  IQWAKSQGIPVGPGRGSGAGSLAAWALLITDIDPIPFNLLFERFLNPERVSMPDFDIDFC 405

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            Q+RRDEVI YV+ +YG +RVAQIITFG LQA+AA+RDVGR L +PY QV+++ +++PN+P
Sbjct: 406  QERRDEVIAYVRREYGADRVAQIITFGKLQARAAVRDVGRVLGLPYGQVNKVAEIVPNNP 465

Query: 484  AHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A P+ L    D + R RE R +D SV RL+EI+ ++EGLYRHASTHAAG+VIGDRPL++L
Sbjct: 466  AKPIPLAEAVDAEPRLREMRDSDESVKRLIEIAMQVEGLYRHASTHAAGVVIGDRPLNEL 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+Y+D RSD+ +TQ++MK +E+AGL+KFDFLGL TLT++ ++L+FL   G  VD++ IP
Sbjct: 526  VPLYKDPRSDMLITQYSMKHVEQAGLVKFDFLGLTTLTIISRALNFLDGLGTPVDIAKIP 585

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD +TY +L+     G+FQ E+ G R  L  M+PD  ED+IA V+L RPGP+ NI  Y 
Sbjct: 586  LDDAKTYEMLSRAEAGGVFQFETQGFRDVLRQMRPDRFEDLIAAVALNRPGPMANIPAYC 645

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G+    S  P I  +L ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+
Sbjct: 646  ARKHGES-WESPDPSIHEILSETYGIMVYQEQVMQIAQKMAGYSLGAADLLRRAMGKKIR 704

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EM+ Q++ F+ GA   G ++  AV +F+L+AKFADYGFNKSHAAAYA++SYQTAW++ +
Sbjct: 705  AEMEAQRKIFVEGAVARGTAEAKAVEVFDLMAKFADYGFNKSHAAAYALVSYQTAWLRAN 764

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-----IYY 837
            +P  F+AASM+L   N EK+    QDA +  I ++PP +N    DF V         I Y
Sbjct: 765  HPAAFIAASMSLSQANHEKLAALKQDAVRIGIPVLPPDINASAADFTVERQADGTLAIRY 824

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            +LAAIK VG    + ++ A A++PF  L DF +RVD + LN+  +E L  AGA D    +
Sbjct: 825  ALAAIKRVGAGAMQDVVRARANRPFADLADFAARVDPRALNKAQIEQLARAGAFDRIDPN 884

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R ++    + + + AQ   ++R +   N+F        + + L       +  R   E  
Sbjct: 885  RARVAAGAELLVRRAQAEAESRASGQINLFGDAAAP--EPLPLPDVPDWPAFERLSFEAE 942

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
             +G++ + HPLD Y  +LR++G+      E+ A      ++LA  VV ++++ TR GSR+
Sbjct: 943  AVGYHLTAHPLDAYDTVLRRLGVVPSNLIEARAKAGIGRVKLAGAVVGRKERTTRTGSRM 1002

Query: 1016 GWVTFSEPAKEYEANFF 1032
             WV  S+ A  +E   F
Sbjct: 1003 AWVMLSDQAGGFEVTLF 1019


>gi|300114836|ref|YP_003761411.1| DNA polymerase III subunit alpha [Nitrosococcus watsonii C-113]
 gi|299540773|gb|ADJ29090.1| DNA polymerase III, alpha subunit [Nitrosococcus watsonii C-113]
          Length = 1158

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 430/1042 (41%), Positives = 615/1042 (59%), Gaps = 30/1042 (2%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +PSFVHL++H+ YSL++  + +  ++        PAIA+TD +N+F+ ++F + A AAG+
Sbjct: 2    APSFVHLRLHTEYSLVDSLVRIRPLIQATREAGMPAIAVTDQSNVFAMIKFYRAAQAAGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIG  + +           G           LL     GY+ L  L+SR Y   Q + 
Sbjct: 62   KPIIGADIFLA----------GSGERSRASRFTLLCQNELGYRHLSGLLSRAYREGQYQG 111

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+   WLQ +  +GLI+L+GG  G + +A    +   A + L  ++ LF  R Y+ L 
Sbjct: 112  IPRLQWDWLQNL-NDGLIVLSGGREGDVGQALLSGNDIQAGRLLERWQALFPGRYYLELH 170

Query: 188  RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R     +       V LA  ++ P+VATN+  FL  +D+EAH+  + +     ++   R 
Sbjct: 171  RTGREGEEDYLHAAVALALAYDTPVVATNDVRFLRPQDFEAHEARVCIHEGRALNDPRRS 230

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  +   YL+  SEM  +F DLPEALENTVEIARRC+  L +    LP F   E   I+ 
Sbjct: 231  RHYSEQQYLRTPSEMAELFVDLPEALENTVEIARRCNLELTLGKYYLPNFPVPEDWSIEA 290

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                E R      L          K   +  Y  RL  EL VI +M F GYFLIVADFI+
Sbjct: 291  FLAAEARQGLEQRLAKLYPLETERKAEQS-AYEARLAEELAVINQMGFPGYFLIVADFIR 349

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAKKN IPVGPGRGSGAGS+ AYAL ITD+DPL F L+FERFLNP+R+S+PDFDIDFC +
Sbjct: 350  WAKKNEIPVGPGRGSGAGSLVAYALQITDLDPLAFDLIFERFLNPERVSLPDFDIDFCME 409

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRD VI YV   YG + V+QIIT+G++ AKA +RDVGR L  PY  VD++ KLIP D   
Sbjct: 410  RRDWVIDYVSQHYGRDHVSQIITYGTMAAKAVVRDVGRVLGHPYGFVDQIAKLIPFDLKM 469

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +  +A+A+    R     +  V  L+++++KLEGL R+A  HA G+VI  + L++ VP 
Sbjct: 470  TLD-KALAESEGLRSRYEGEEEVQFLVDLARKLEGLIRNAGKHAGGVVIAPKKLTEYVPY 528

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSL 600
            Y +  +   VTQF+   IE  GL+KFDFLGL+TLT+L  +L  + ++  +      DL+L
Sbjct: 529  YCEQGASGVVTQFDKDDIETIGLVKFDFLGLRTLTILDWALQAINRQRTQQGETLLDLAL 588

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV- 659
            +P DD ++Y LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP+ + + 
Sbjct: 589  LPMDDSKSYGLLKRCATTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMV 648

Query: 660  -VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y NRK+G+ ++   HP ++P+LK T GVI+YQEQVMQIAQ+L+GY+L EAD+LRRAMG
Sbjct: 649  DDYINRKHGRAQVDYPHPALEPILKPTYGVIVYQEQVMQIAQVLAGYTLGEADLLRRAMG 708

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM KQ+  F +GA    + +  A  IF+L+ KFA+YGFNKSH+AAYAVI+YQTA+
Sbjct: 709  KKKPEEMAKQRAIFTAGAKAREVDEKKATAIFDLMEKFAEYGFNKSHSAAYAVIAYQTAY 768

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYY 837
            +K HYP  ++AA ++ +MDN +K+K F ++     + ++PP VN     F   G+  I Y
Sbjct: 769  LKAHYPASYMAAVLSADMDNTDKVKAFVEECWAMKLDLLPPDVNASNYLFSAQGETAIRY 828

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L AIKGVG      I++A      + +L +FC R+D +K++RRVLE+LV AGALD  G 
Sbjct: 829  GLGAIKGVGAAALEGIIKAREQHGLYQNLFEFCRRIDLRKISRRVLEALVRAGALDSLGA 888

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENE 955
            +R  L  SL+     A+   +N +    ++F  +  +   +  +  +    +   R   E
Sbjct: 889  NRATLEASLEAALALAEQHCRNASLGQNDLFGLDLVSEDKEAGSYVETKEWDEEQRLALE 948

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG-----NNIRLAAMVVSKQQKKTR 1010
            +  LG Y SGHP+D YK  L+++      E +            I +A +V S +  K R
Sbjct: 949  KETLGLYLSGHPIDCYKQELKQIAPCRIAELIDRANNRQNRSQQIMIAGLVGSVRTNKAR 1008

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G R  ++T  + +   E   F
Sbjct: 1009 QGGRNAFITLEDGSARLEIKAF 1030


>gi|306818530|ref|ZP_07452253.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus mulieris
            ATCC 35239]
 gi|304648703|gb|EFM46005.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus mulieris
            ATCC 35239]
          Length = 1273

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/1074 (32%), Positives = 549/1074 (51%), Gaps = 52/1074 (4%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             + +  S  FVHL VH+ YS+L+GA  +  +++K A + Q A+AITD   LF A EF   
Sbjct: 1    MEGMASS-DFVHLHVHTDYSILDGAAKVARLVEKAAENGQSAVAITDHGYLFGAYEFYAA 59

Query: 62   ACAAGIQPIIGCQLDIDMQD-------------NLKMTNQGKTPFPTVPSIVLLVSTAEG 108
            A   G++PIIG +  +                   +      +       + LL  T EG
Sbjct: 60   AVKTGVKPIIGLEAYVTPGTSRFDTKRVHWGTLEQQKAGDDVSANGAYTHMTLLSRTTEG 119

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
               L  L S   +  Q  +  R+    LQ     GL+  +G  SG +           A 
Sbjct: 120  MHNLFRLGSLASIDGQMGKWPRLDRELLQRY-AGGLVGTSGCPSGEVQVKLRLGLYDEAL 178

Query: 169  KRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            +     + +FG +  Y+ L  H    +R     +++LA   + PL+ATN+S ++++ED E
Sbjct: 179  RTAGELQDIFGKEFFYIELMDHGLSIERRVREDLLRLAKALDAPLLATNDSHYVNKEDRE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE-MVSIFSDLPEALENTVEIARRCSFIL 285
              D ++ +     ++ ++R R     Y    S  M  +F DLP+A +NT+ +A +C    
Sbjct: 239  IQDAMLCINSGDQLNNENRFRFDGTDYYLRPSNEMRELFRDLPQACDNTLLVAEQCEVKF 298

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                     F+ K      + EE+    +   GL  R  QG        +  R+R D+E+
Sbjct: 299  STVD-DGASFMPKFQVPAGENEESWFVKEVERGLNYRYPQG------ITEAVRKRADYEV 351

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             +I +M F+GYFL+V+D+IQWAK+  I VGPGRGSGAGS+ AYA+ ITD+DPL+  LLFE
Sbjct: 352  GIILQMGFAGYFLVVSDYIQWAKQQGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLLFE 411

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+SMPD D+DF   RR EVI YV  KYG +++AQ++T+G+++ K AL+D  R  
Sbjct: 412  RFLNPERVSMPDIDVDFDDRRRAEVIEYVTRKYGKDKIAQVVTYGTIKTKQALKDAARIS 471

Query: 466  QMPYSQVDRLCKL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQ 516
               +S  + L K   P      +              +   FR+   +      +  ++ 
Sbjct: 472  GAAFSVGENLTKALPPAAMGKDIPLSQIYNKDHPRYKEAEEFRKVVASTGENQAIFSLAS 531

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             +EG+ R    HA  +++    L+ ++PM + ++    +TQF+    E  GL+K DFLGL
Sbjct: 532  GVEGMTRQWGVHACAVIMSSHTLTDIIPMMKRLQDGAIITQFDYPTCEHLGLLKMDFLGL 591

Query: 577  KTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            K LT++  +LD +        DL  +P DD  TY LL++  TLG+FQL+  GMR  L+ +
Sbjct: 592  KNLTIISDALDNIKLNGKTPPDLEHLPIDDRATYELLSSGETLGVFQLDGGGMRTLLKQL 651

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK--IVSIHPLIDPMLK----ETQGVI 689
            +P   +DI ALV+LYRPGP+      N          I  IHP +   LK     T G+I
Sbjct: 652  RPTEFDDISALVALYRPGPMGADSHTNYALRKNGAMGIKPIHPELADPLKDILGYTYGLI 711

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            IYQEQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ  +F  G   NG S+     +
Sbjct: 712  IYQEQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMLGNGYSEDCCKTL 771

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +++L  FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T +  + +K+  +  + 
Sbjct: 772  WDILVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQ-TDKDKLGMYLNEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDF 868
            R+  I+++PP VN     F      I + LA+I+ VG      I++       + S +DF
Sbjct: 831  RRMGIRVLPPDVNASVATFAPDGADIRFGLASIRNVGEGVVEGIIKSRRDKGAYTSFQDF 890

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
             ++V ++  N+R +ESL+ AGA D FG +R  L+   +        +++  +    ++FA
Sbjct: 891  LNKVPAEVCNKRAIESLIKAGAFDAFGVARRALVAVHEEAVDSVISLKRQESKGQFDLFA 950

Query: 929  HEKGTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
               G   D      + +          +   E+++LG Y S HPL   + +LR++     
Sbjct: 951  SLDGGGDDLLEGFSVEIPALKEWPKKDKLAFERQMLGLYVSDHPLSGMENVLRRLAADQI 1010

Query: 984  EESVA---TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
             E  +         +R+A ++ S + K +++ G         + +      FFP
Sbjct: 1011 IELTSEDGKPNDAEVRIAGLITSVEHKTSKRTGQPWAIARLEDMSGAINVLFFP 1064


>gi|227875268|ref|ZP_03993410.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
 gi|227844173|gb|EEJ54340.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243]
          Length = 1273

 Score =  740 bits (1910), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/1074 (32%), Positives = 549/1074 (51%), Gaps = 52/1074 (4%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             + +  S  FVHL VH+ YS+L+GA  +  +++K A + Q A+AITD   LF A EF   
Sbjct: 1    MEGMASS-DFVHLHVHTDYSILDGAAKVARLVEKAAENGQSAVAITDHGYLFGAYEFYAA 59

Query: 62   ACAAGIQPIIGCQLDIDMQD-------------NLKMTNQGKTPFPTVPSIVLLVSTAEG 108
            A   G++PIIG +  +                   +      +       + LL  T EG
Sbjct: 60   AVKTGVKPIIGLEAYVTPGTSRFDTKRVHWGTLEQQKAGDDVSANGAYTHMTLLSRTTEG 119

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
               L  L S   +  Q  +  R+    LQ     GL+  +G  SG +           A 
Sbjct: 120  MHNLFRLGSLASIDGQMGKWPRLDRELLQRY-AGGLVGTSGCPSGEVQVKLRLGLYDEAL 178

Query: 169  KRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            +     + +FG +  Y+ L  H    +R     +++LA   + PL+ATN+S ++++ED E
Sbjct: 179  RTAGELQDIFGKEFFYIELMDHGLSIERRVREDLLRLAKALDAPLLATNDSHYVNKEDRE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE-MVSIFSDLPEALENTVEIARRCSFIL 285
              D ++ +     ++ ++R R     Y    S  M  +F DLP+A +NT+ +A +C    
Sbjct: 239  IQDAMLCINSGDQLNNENRFRFDGTDYYLRPSNEMRELFRDLPQACDNTLLVAEQCEVKF 298

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                     F+ K      + EE+    +   GL  R  QG        +  R+R D+E+
Sbjct: 299  STVD-DGASFMPKFQVPAGENEESWFVKEVERGLNYRYPQG------ITEAVRKRADYEV 351

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             +I +M F+GYFL+V+D+IQWAK+  I VGPGRGSGAGS+ AYA+ ITD+DPL+  LLFE
Sbjct: 352  GIILQMGFAGYFLVVSDYIQWAKQQGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLLFE 411

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+SMPD D+DF   RR EVI YV  KYG +++AQ++T+G+++ K AL+D  R  
Sbjct: 412  RFLNPERVSMPDIDVDFDDRRRAEVIEYVTRKYGKDKIAQVVTYGTIKTKQALKDAARIS 471

Query: 466  QMPYSQVDRLCKL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQ 516
               +S  + L K   P      +              +   FR+   +      +  ++ 
Sbjct: 472  GAAFSVGENLTKALPPAAMGKDIPLSQIYNKDHPRYKEAEEFRKVVASTGENQAIFSLAS 531

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             +EG+ R    HA  +++    L+ ++PM + ++    +TQF+    E  GL+K DFLGL
Sbjct: 532  GVEGMTRQWGVHACAVIMSSHTLTDIIPMMKRLQDGAIITQFDYPTCEHLGLLKMDFLGL 591

Query: 577  KTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            K LT++  +LD +        DL  +P DD  TY LL++  TLG+FQL+  GMR  L+ +
Sbjct: 592  KNLTIISDALDNIKLNGKTPPDLEHLPIDDRATYELLSSGETLGVFQLDGGGMRTLLKQL 651

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK--IVSIHPLIDPMLK----ETQGVI 689
            +P   +DI ALV+LYRPGP+      N          I  IHP +   LK     T G+I
Sbjct: 652  RPTEFDDISALVALYRPGPMGADSHTNYALRKNGAMGIKPIHPELADPLKDILGYTYGLI 711

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            IYQEQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ  +F  G   NG S+     +
Sbjct: 712  IYQEQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMLGNGYSEDCCKTL 771

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +++L  FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T +  + +K+  +  + 
Sbjct: 772  WDILVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQ-TDKDKLGMYLNEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDF 868
            R+  I+++PP VN     F      I + LA+I+ VG      I++       + S +DF
Sbjct: 831  RRMGIRVLPPDVNASVATFAPDGADIRFGLASIRNVGEGVVEGIIKSRRDKGAYTSFQDF 890

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
             ++V ++  N+R +ESL+ AGA D FG +R  L+   +        +++  +    ++FA
Sbjct: 891  LNKVPAEVCNKRAIESLIKAGAFDAFGVARRALVAVHEEAVDSVISLKRQESKGQFDLFA 950

Query: 929  HEKGTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
               G   D      + +          +   E+++LG Y S HPL   + +LR++     
Sbjct: 951  SLDGGGDDLLEGFSVEIPALKEWPKKDKLAFERQMLGLYVSDHPLSGMENVLRRLAADQI 1010

Query: 984  EESVA---TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
             E  +         +R+A ++ S + K +++ G         + +      FFP
Sbjct: 1011 IELTSEDGKPNDAEVRIAGLITSVEHKTSKRTGQPWAIARLEDMSGAINVLFFP 1064


>gi|311063925|ref|YP_003970650.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum PRL2010]
 gi|310866244|gb|ADP35613.1| DnaE DNA polymerase III alpha subunit [Bifidobacterium bifidum
            PRL2010]
          Length = 1192

 Score =  740 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/1080 (31%), Positives = 552/1080 (51%), Gaps = 61/1080 (5%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             + +  +  FV L  H+ YSLL+GA  + +++ ++     PA+ ITD  N+  A E  + 
Sbjct: 1    MERMAGN--FVQLHNHTHYSLLDGASKVPDLVKRVKELGMPAVGITDHGNMHGAYELWRA 58

Query: 62   ACAAGIQPIIGCQLDIDMQD------------------NLKMTNQGKTPFPTVPSIVLLV 103
            A  +G++PIIG +  +  +                            +    +  + +  
Sbjct: 59   AVDSGVKPIIGIEAYVTPETARQDKTRVSWDTNWTPVPGHARNPDDVSGGGLITHLTMWA 118

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
               EG   LI+  S   L  +  +  R+    L    ++G+I  +G  SG I        
Sbjct: 119  ENDEGLVNLIKASSVANLEGRVMRYPRMDKEVLSTY-SKGVIASSGCPSGIIQTRLRLGQ 177

Query: 164  SQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLS 221
               A +    F+ +FG D  Y+ L  H    +      ++ +A     PL+ATN+S ++ 
Sbjct: 178  FDEALRAAGEFQDIFGKDNFYIELMDHGLSIESKVTGDLLTIAKKLGAPLLATNDSHYVM 237

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            E D +A D ++ +     +   +R +     +Y+K+  EM  +F D P+A +NT+EIA R
Sbjct: 238  EADKDAQDAMLCINSGATLDDPNRFKFEGSGYYIKSAEEMRELFKDHPDACDNTLEIAER 297

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
            C+ I   H            +    +E +    K   GLE R        G    +  ++
Sbjct: 298  CNVIFDDHEDGAFMPQFDCPEG--WDETSLFLKKVEEGLEKRY------DGNPPMEVLKQ 349

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
             D+E  VI +M+F GYFL+VAD+I WAK++ + VGPGRGS AG++ AYA+ IT++DPL+ 
Sbjct: 350  ADYECGVICQMQFCGYFLVVADYINWAKEHGVMVGPGRGSAAGAMVAYAMGITELDPLKH 409

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             L+FERFLNP+R+S+PD D+DF  + R  V+ YV +KYGH++VAQ + +G+++ K AL+D
Sbjct: 410  GLIFERFLNPERVSLPDIDVDFDPEGRMRVLGYVADKYGHDKVAQCVIYGTIKTKQALKD 469

Query: 461  VGRALQMPYSQVDRLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDR 510
              R +  P+    R+ + +P        +S+  I D S         +RE   +DP V R
Sbjct: 470  SARIMGFPFEMGTRITEALPPAATGGKDISVHDIFDPSAKRYAEAREYRELYDSDPEVKR 529

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            + E ++ +EGL R    HA   ++G  P++   P+  +       T F     E  GL+K
Sbjct: 530  ITEEAKGIEGLIRQTGVHACATIMGSAPITDTSPL-LERTDGTVTTTFEYHTCETLGLVK 588

Query: 571  FDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             DFLGL  LT+++ +L  +       +D + IP DD ETY LL+   TLG+FQL+S GMR
Sbjct: 589  MDFLGLSNLTVIRDTLTNIEHNGKGVIDYTKIPLDDRETYQLLSRGDTLGVFQLDSDGMR 648

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE--- 684
              L+ ++PD   DI AL++LYRPGP+       Y  RKNG +KI  IHP +D  LK+   
Sbjct: 649  SLLKTLKPDNFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELDEPLKQVLD 708

Query: 685  -TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T G+IIYQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+
Sbjct: 709  ETYGLIIYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSE 768

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
              A  I+E+L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N  K  
Sbjct: 769  EAAEAIWEILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKNKTA 828

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA--DKP 861
             +  +AR+  IQ++ P VN    ++    + + + L AI+ VG    + I+         
Sbjct: 829  LYLGEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGENAVKDIIAERETGRGK 888

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + +  DF  RV    LNRR++ESL+ AGA D    +R  L    ++       +++ +  
Sbjct: 889  YVNFMDFIRRVPLTALNRRLVESLIKAGAFDSIDPNRRALFTVHESAIDSVVGLKRKQAE 948

Query: 922  KHENIFAHEKGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
               ++F+  + + +D      + +      +   + + E+ +LG Y S HPL   + +L 
Sbjct: 949  GQFDLFSDTEDSSADAMGDATVAVPDIEEWDKKDKLKFERDMLGLYVSDHPLSGMQAVLA 1008

Query: 977  KMGIKGYEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             M        +        G  + LA ++ +  ++ ++KG+    VT  +     +  FF
Sbjct: 1009 GMREMSIAHLIDRAPTMPSGQQVTLAGLITNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1068


>gi|299136806|ref|ZP_07029989.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX8]
 gi|298601321|gb|EFI57476.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX8]
          Length = 1177

 Score =  740 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/1060 (37%), Positives = 602/1060 (56%), Gaps = 42/1060 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  F HL +H+ YSLL+GA  ++ +   +    Q + A+TD  N++ A+ F        +
Sbjct: 2    AAEFTHLHLHTDYSLLDGACDVDKLAKHLVKIGQTSAAMTDHGNIYGAVHFFDAMKKKNL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+GC+L +  +D+ +       P      +++L     GY+ L+ L S   L     +
Sbjct: 62   KPILGCELYVCKEDDHRREFAN--PDSKYNHMLVLAENEAGYRNLVRLTSEAALHG-FYK 118

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              R+  ++L +   EGLI  +G  +G + +       + A+K    ++ +FG    ++ +
Sbjct: 119  KPRVSKNFLAK-HVEGLIGFSGCLAGEVSQHLMEGDYEKAKKAAGDYETMFGRGNFFLEI 177

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    D+     + +L    ++PL+ATN+S ++ ++D  AH+VL+ V  +  ++   R
Sbjct: 178  QDHGLEPDKAVTEAMFRLEKDLDIPLIATNDSHYIEDQDSRAHEVLLCVQTAGSMNDPKR 237

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             +  T + Y+K+  EM  +FS  PE    T++   RC   L+      P+F   E +D+ 
Sbjct: 238  FKFDTQEFYIKSADEMHRLFSHAPEVCTRTMQFPERCQLELKAVKNPFPKFDVPEGEDLD 297

Query: 305  KEEENELRNKAVAGLE--VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
               E   R       E  V+  +          DY  RL+ E++ I +MKF GYF+IV D
Sbjct: 298  SYFEQVCRAGWRHRRETAVKHLEDRGILRKSIADYEARLNREIDCIKQMKFPGYFMIVWD 357

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI++AK+ +IPVGPGRGS AGS+ AY + ITD+DPL+  LLFERFLNP+R+SMPD DIDF
Sbjct: 358  FIRYAKQQSIPVGPGRGSAAGSLVAYVMEITDVDPLQNDLLFERFLNPERVSMPDVDIDF 417

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI+YV+ KYG ++VAQIITF ++ AKAA++DVGRAL MPY +VDR+ KLIP  
Sbjct: 418  CMNRRGEVIKYVREKYGEDQVAQIITFNTMAAKAAIKDVGRALDMPYGEVDRIAKLIPAT 477

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +    + D     +A    P +  L++ + +LEGL R A  HAAG+VI  +PL++L
Sbjct: 478  IGITIEQA-LKDSPPLAQAYED-PKIRELIDTALRLEGLVRGAGVHAAGVVIAPQPLTEL 535

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601
            VP+ R  + D  VT ++MK +EK GL+K DFLGL TLT++   L  +   RGV VD++ I
Sbjct: 536  VPVTR-TKDDAIVTSYDMKAVEKMGLLKMDFLGLTTLTVIDDCLKLIKSNRGVDVDMATI 594

Query: 602  PFDDHETYH-LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NI 658
            P DD ETY  +     T G+FQ ES GMR  L   +P  +ED+ AL +LYRPGPI    I
Sbjct: 595  PLDDAETYEKVYHRALTSGVFQFESGGMRDVLRRYKPTTVEDLTALNALYRPGPIQGGMI 654

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK G+  +  + P ++P+LKET GVI+YQEQVMQI+  ++GYSL  AD+LRRAMG
Sbjct: 655  DDFIERKWGRRAVEYLFPELEPILKETLGVIVYQEQVMQISSAIAGYSLGGADLLRRAMG 714

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM KQ+  F++GA++    K  A  +F+L+ +FA YGFNKSH+AAYA+++Y TAW
Sbjct: 715  KKNAEEMAKQRVLFMAGAAERKFHKDRAGQLFDLMEQFAGYGFNKSHSAAYALLAYHTAW 774

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +KTHYPVEF+AA +T E    E + K+  + R+ NI ++PP V     +F    + I + 
Sbjct: 775  LKTHYPVEFMAALLTSETSKPENVVKYIGECREINIPVVPPDVQISAANFTPAGDSIRFG 834

Query: 839  LAAIKGVGTTTARHIMEASAD------KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            LAAIK VG      I++A  +      + F SL +FC +VD + +N+RVLESL  AGALD
Sbjct: 835  LAAIKNVGHNAIDSIIKAREELQAAGKQGFVSLWEFCDKVDLRLMNKRVLESLCKAGALD 894

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH------EKGTFSDKITLEKFSVE 946
             FG  R ++  +LD   + AQ  +++       +F           +   + TL      
Sbjct: 895  AFGP-RARVFAALDKAMERAQKSQRDAAAGQSGLFGMFDDPGPSSASTGGEETLPPAPDW 953

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI------------RGNN 994
            +   R +NE+ VLGF+ SGHP+D Y+  LR M +     +                +GN 
Sbjct: 954  DEHTRLQNEKDVLGFFVSGHPMDKYREKLRNMKVVDTATACEMKPEPQVFRRGQAEQGNE 1013

Query: 995  IRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
            I++A ++   +  K+++ G         +   + +   FP
Sbjct: 1014 IQIAGVITGLKVAKSKRSGEMYAQAYLEDTVGKIDLIAFP 1053


>gi|328950095|ref|YP_004367430.1| DNA polymerase III, alpha subunit [Marinithermus hydrothermalis DSM
            14884]
 gi|328450419|gb|AEB11320.1| DNA polymerase III, alpha subunit [Marinithermus hydrothermalis DSM
            14884]
          Length = 1224

 Score =  740 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1092 (38%), Positives = 605/1092 (55%), Gaps = 83/1092 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIA-----ADQQPAIAITDTNNLFSALEFSQKACAA 65
            F HL  H+ YSLL+GA  L ++++ +          PA+A+TD  NL  A++F +KA AA
Sbjct: 3    FAHLHQHTQYSLLDGAAKLQDLIEWVKQVTPDE---PALAMTDHGNLHGAVDFYKKATAA 59

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G++PIIG +  +  +        GK        + +L     GYQ L  L SR YL +  
Sbjct: 60   GVKPIIGYEAYVAAESRFDR-KMGKGLDGGYFHLTILAENFTGYQNLCRLASRAYL-EGF 117

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                RI    L+E   EGLI+L+G     I +    +   +AE RL  + ++FGDR ++ 
Sbjct: 118  YMKPRIDRELLRE-HNEGLIVLSGCLGAEIPQFILQDRLDLAEDRLKEYLEIFGDRYFIE 176

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    D+   + + + A  + + +VATN+  ++ +ED EAH VL+A+   +     +
Sbjct: 177  IQDHGLPEDKKVNAVLKEFARKYGIGMVATNDGHYVKKEDAEAHAVLLAIQSKSTWDDPN 236

Query: 245  RPRVTPDHYLKNRSEMVSI----FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            R R   D +     E +           E  +NT+EIARRC+  L V   ++ R   +  
Sbjct: 237  RWRFPCDEFYVKSPEAMRAALPAEEWGDEIFDNTMEIARRCNVELPVGDKMVYRI-PRYP 295

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH------------------------AQD 336
                ++E   LR     GL  R         Y                          ++
Sbjct: 296  LPEGRDENQYLRELTFRGLLERYPDRVTEALYREFLKKLGRTPHGDAQALAAEIALLPKE 355

Query: 337  YRQ----------------------RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
             R+                      R ++EL+VI +M F GYFLIV D+I WAK   I V
Sbjct: 356  LREKAQAFLPKLEEGLEWDGWAILARAEYELSVIEQMGFPGYFLIVQDYINWAKNQGISV 415

Query: 375  GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
            GPGRGS AGS+ AYA+ IT+IDPL F+LLFERFLNP R++MPD D DF   RRDEVI+YV
Sbjct: 416  GPGRGSAAGSLVAYAIRITNIDPLEFNLLFERFLNPARVTMPDIDTDFSDVRRDEVIQYV 475

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            + +YG ++VAQI TFG++ +KAAL+DV R   MP+ + + L KLIP     P+ L   A+
Sbjct: 476  RERYGEDKVAQIATFGTMASKAALKDVARVFGMPHKRAEELAKLIPVQFGKPMPLAKAAE 535

Query: 495  D-SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                 R+A   D  V R+ E++++LEGL RHAS HAAG+VI   PL+ LVP+ RD     
Sbjct: 536  TIPEIRQAMEQDEQVRRVFEVARRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRDTSGTG 595

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLL 612
             VTQ++M  +E  GL+K DFLGL+TL+ L+++   + + +GV++D   IP DD +T+ LL
Sbjct: 596  VVTQYDMGSVEALGLLKMDFLGLRTLSFLEEAKRIIRESKGVELDYDRIPLDDAKTFELL 655

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
                T GIFQLESSGM   + G++P  I+DIIALVSLYRPGP+++I  Y  R +G+E + 
Sbjct: 656  GRGETKGIFQLESSGMSSTVRGLKPRRIQDIIALVSLYRPGPMEHIPTYIRRHHGREPVT 715

Query: 673  SIH-----PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
                      ++P+L+ET G+ +YQEQ+MQIA  ++GYSL EAD+LRRAMGKK  EEM K
Sbjct: 716  YAEFPHAAKYLEPILRETYGIPVYQEQIMQIASAVAGYSLGEADLLRRAMGKKKVEEMQK 775

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             + RF+ GA++ GI +  A  +F++L  FA+YGFNKSHAAAY+++SYQTA++K +YPVEF
Sbjct: 776  HRVRFVKGAAERGIPEDEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKANYPVEF 835

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +AA +T+E  N +K+ ++ +DAR   I ++PP +N    DF+V    I + L+A+K VG 
Sbjct: 836  MAALLTVERRNSDKVAEYIRDARAMGIAVLPPDINRSGFDFRVVGQEILFGLSAVKNVGE 895

Query: 848  TTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               RHI+E      PF SL DF  RVD  ++NRR  ESL+ AGA D FG  R ++L +L+
Sbjct: 896  GAVRHILEERDRGGPFKSLADFLKRVDLHQVNRRAAESLIKAGAFDAFGE-RGRMLAALE 954

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
            ++ K+AQ  ++++      +FA                  +   +   E+  L  Y +GH
Sbjct: 955  SLMKWAQAEKESQAAGMMGLFAGASTEPPLPEVPPL----DEVTKLRYEKEALSIYVTGH 1010

Query: 967  PLDVYKPILRKMGIKGYEES----VATIRGNNIR--LAAMVVSKQQKKTRKGSRIGWVTF 1020
            PL  Y+  LR+      EE          G   R  LA MV S  +K T+ G  +     
Sbjct: 1011 PLLNYEG-LREAATCTIEELPRWYAEQGNGRRARALLAGMVESVVRKPTKSGGMMARFNL 1069

Query: 1021 SEPAKEYEANFF 1032
            ++     E   F
Sbjct: 1070 ADETGAVEVVVF 1081


>gi|53718752|ref|YP_107738.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei K96243]
 gi|237811495|ref|YP_002895946.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei MSHR346]
 gi|254181269|ref|ZP_04887866.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1655]
 gi|254195140|ref|ZP_04901569.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei S13]
 gi|254261192|ref|ZP_04952246.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1710a]
 gi|52209166|emb|CAH35110.1| putative DNA polymerase III alpha subunit [Burkholderia pseudomallei
            K96243]
 gi|169651888|gb|EDS84581.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei S13]
 gi|184211807|gb|EDU08850.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1655]
 gi|237506197|gb|ACQ98515.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei MSHR346]
 gi|254219881|gb|EET09265.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1710a]
          Length = 1174

 Score =  740 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+
Sbjct: 110  YRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   
Sbjct: 230  RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GL+ RL Q    +         Y QRLDFE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++   +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ A
Sbjct: 826  GKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R QLL S+    + A+    N       +F    G  + +  L      + 
Sbjct: 886  GAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + + 
Sbjct: 943  KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022


>gi|18251957|gb|AAL66178.1|AF459434_1 DNA polymerase III alpha subunit [Saccharomonospora phage PIS 136]
          Length = 1206

 Score =  740 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/1067 (31%), Positives = 528/1067 (49%), Gaps = 54/1067 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ +S+L+GA  +  + D+      PA+A+TD  N+F A EF Q++   GI+P
Sbjct: 68   SFVHLHVHTEFSMLDGAAKMKPLFDEATRLGMPAVAMTDHGNMFGAYEFFQQSKKTGIKP 127

Query: 70   IIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVLLVSTAEGYQRL 112
            IIG +  +  +                           +       + +L   A G + L
Sbjct: 128  IIGIEAYVAPESRHHKKPVFWGHHGQRGADEFGEGGDVSGAGAYTHMTMLARNATGLRNL 187

Query: 113  IELV-SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
             +L  SR +     K   R+    + E   EG+I  TG  SG +         + A +  
Sbjct: 188  FKLSYSRAWRATTAK--PRMDRDLIAE-HAEGIIATTGCPSGEVQTRLRLGQPKEALQAA 244

Query: 172  LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
              F+ +FG +  ++ L  H    +R     ++ +A    L  VATN+S +++++  +AH 
Sbjct: 245  SDFRDIFGPENFFLELMDHGLPIERSVREGLLDIAKQLGLRPVATNDSHYVTQDQADAHS 304

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             L+ V     ++  +R +   D Y    +  +  + D          +            
Sbjct: 305  ALLCVQSGKTLNDPNRFKFDGDGYYLKSAAEMRAYWDTEVPGAADNTLLIASMVESYDDV 364

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                  + +      K +E  LR +    +  R   G        Q YR +L++EL VI 
Sbjct: 365  FAPTNRMPQAKIVPGKTDEQVLREEIEQFIPTRFPDGM------PQKYRDQLEWELEVII 418

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
               ++ YFL+V D ++WAK N I VGPGRGS AG++ +Y L I DIDPL+  L+FERFLN
Sbjct: 419  GKGYASYFLVVGDLVRWAKNNGIRVGPGRGSAAGALLSYILHIIDIDPLKHGLIFERFLN 478

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QM 467
            P+R S PD DIDF + RRDEVI Y +NKYG E  A++IT+G+++ KAA +D  R    Q 
Sbjct: 479  PERESPPDIDIDFDERRRDEVIEYAKNKYGSEYFAKVITYGTIKTKAAFKDAARVHLGQA 538

Query: 468  PYSQVDRLCKLIPNDPA---------HPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
             +S  DR  K +P   A              +  A+ +  R    +DP V ++ + ++ L
Sbjct: 539  GFSVADRFSKALPPPVAAKDIPLSGIMDPEHERYAEAAEVRSLIESDPEVSKIFDTARGL 598

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R+A  HA   +I   PL  ++P+++       +T ++    E  GL+K D LGL  
Sbjct: 599  EGLIRNAGVHACAHIISREPLLDVLPLWQRE-DGAIITGWDGPQCEGVGLLKIDILGLVN 657

Query: 579  LTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            +T +  +   +    GV++D   +P DD  T+ +L    +LG+FQLE  GM+  L+ MQP
Sbjct: 658  MTTIDDTARMVKANHGVEIDPLALPMDDATTFDMLGRGESLGVFQLEGGGMQALLKRMQP 717

Query: 638  DCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIY 691
               EDI+A V+LYRPGP+D    + Y +RKNG++K+  IHP ++      L ET G+I+Y
Sbjct: 718  TTFEDIVACVALYRPGPMDVDAHLHYADRKNGRQKVSPIHPELEEPLAEILSETYGLIVY 777

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQ+MQIAQ ++ Y+L +AD LRRAMGKK KE ++K+   F  G   NG S      +++
Sbjct: 778  QEQIMQIAQKVANYTLGQADTLRRAMGKKKKEVLEKEFAVFEEGMKANGFSGEAIKALWD 837

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  FA Y FNKSHAAAY +I+Y TA++K +YP E++AA +T   D  +K   +  + R+
Sbjct: 838  TILPFAGYAFNKSHAAAYGLITYWTAYLKANYPAEYMAALLTANADKKDKSAVYLAECRR 897

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
              ++++PP VN   V F   D  I + L AI+ VG   A  I+     +  F    DF +
Sbjct: 898  MGLKVLPPDVNDSAVQFSATDGNIRFGLGAIRNVGAGVAETIIRDREKEGRFTGFADFLT 957

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            +      ++RV+ESL+ AGA D  G++R  L    ++  +    ++K +     ++F   
Sbjct: 958  KASPSVCSKRVVESLIKAGAFDDLGHTRKALFIVHEDAVEVMSALKKQQAAGQFDLFGAA 1017

Query: 931  KGTFSDKITLEKF----SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
                 +   L             +    E+ +LG Y + HPLD  + +LRK   K     
Sbjct: 1018 PQPMEESSPLAHLKYDPEEWPPKILLSFEREMLGLYVTAHPLDGAEHLLRKWAPKPIATL 1077

Query: 987  V-ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V    +   I ++ +V S +++  +KG      T  +     E  FF
Sbjct: 1078 VHDAPKEGEITISGLVTSVERRLNKKGEPWAICTIEDLDASIEVLFF 1124


>gi|269956096|ref|YP_003325885.1| DNA polymerase III subunit alpha [Xylanimonas cellulosilytica DSM
            15894]
 gi|269304777|gb|ACZ30327.1| DNA polymerase III, alpha subunit [Xylanimonas cellulosilytica DSM
            15894]
          Length = 1181

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/1071 (32%), Positives = 543/1071 (50%), Gaps = 54/1071 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL VHS +S+L+GA  +  ++D++AA  Q A+AITD   LF A EF + A  
Sbjct: 1    MPATDEFVHLHVHSEFSMLDGAARIGELVDEVAAQGQKAVAITDHGYLFGAFEFWKTATN 60

Query: 65   AGIQPIIGCQLDIDMQD---------------NLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
             G++PIIG +  +                   + +      +       + L      G 
Sbjct: 61   KGVKPIIGVEAYVTPGTSRFDQKRQLYGQPLPDGRPDPDDVSARGAYTHMTLWARDNVGM 120

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L    S   L  Q  +  R+    LQ   + GL   TG  SG I         + A +
Sbjct: 121  HNLFRASSLASLEGQMGKWPRMDRDLLQRY-SPGLTATTGCPSGEIQTRLRLGQWEEALR 179

Query: 170  RLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                 + LFG +  YV L  H    +      +++LA     P+VATN+  ++ E D  +
Sbjct: 180  AAGELQDLFGREHFYVELMDHGLEIETRVTKDLLRLAQEIGAPIVATNDLHYVKEADATS 239

Query: 228  HDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
             + L+A+   + +   +R +     +Y+K+ +EM  +F +LPEA+ NT+ IA  C     
Sbjct: 240  QEALLAINSGSTLDDPNRFKFDGTGYYVKSSAEMARLFRELPEAISNTLLIAESCEVSFD 299

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
              A  +P F   + +D    E +    +   GL  R   G         D R R D+E+ 
Sbjct: 300  TQANYMPHFPVPDGED----EISWFVKEVENGLRRRYPDG------IPDDVRTRADYEVG 349

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI +M F GYFLIVADFI W+K+N I VGPGRGS AGS+ AYA+ IT++DP+ + LLFER
Sbjct: 350  VIIQMGFPGYFLIVADFINWSKRNGIRVGPGRGSAAGSMVAYAMGITELDPIPYDLLFER 409

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPD D+DF + RR E IRYV  KYG +RVAQI+T+G+++AK A++D  R L 
Sbjct: 410  FLNPERVSMPDVDVDFDERRRGEAIRYVTEKYGDDRVAQIVTYGTIKAKQAIKDSARLLG 469

Query: 467  MPYSQVDRLCKLIPN-DPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQK 517
             P++  ++L K +P       +             A+ + FR+    DP   R++E+++ 
Sbjct: 470  QPFAMGEKLTKAMPPAVMGKDIPLSGIFDPKHPRYAEAAEFRQVHDVDPEAQRVVELARG 529

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            +EGL R    HAAG+++   PL  ++P+ +  +    +TQF+    E  GLIK DFLGL+
Sbjct: 530  IEGLKRQWGVHAAGVIMSSEPLIDIIPIMKRPQDGAVITQFDYPTSEGLGLIKMDFLGLR 589

Query: 578  TLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT+L  +L+ +       V++  +  DD  TY LL    TLG+FQL+   MR  L  M+
Sbjct: 590  NLTILDDALENIVGNGKEPVEIEKVGLDDPTTYELLARGDTLGVFQLDGGPMRALLRQMR 649

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPM----LKETQGVII 690
            PD  ED+ A+++LYRPGP+      N        ++   IHP +       L  T G+I+
Sbjct: 650  PDNFEDVSAVIALYRPGPMGMNSHTNYALRKNGLQQNTPIHPELAEPLAEVLDTTYGLIV 709

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQV + AQ+L+GYSL +AD+LRRAMGKK KE +DK+   F +G  + G S      ++
Sbjct: 710  YQEQVQRAAQVLAGYSLGQADLLRRAMGKKKKEILDKEFVPFQAGMRERGYSDAAIQAVW 769

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            ++L  FA Y FNK+H+A Y ++SY TA++K +YP E++AA +    ++ +K+  +  + R
Sbjct: 770  DVLVPFAGYAFNKAHSAGYGLVSYWTAYLKANYPAEYMAALLQSTREDKDKLALYLNECR 829

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFC 869
            +  I ++PP VN     F      + + L+ ++ VG      I+    +   + S  DF 
Sbjct: 830  RMGITVLPPDVNVSAAKFTAVGKDVRFGLSGVRNVGANVVDAIVRTREEKGAYTSFTDFL 889

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             +V +   N+R +ESL+ AGA D    SR  LL   +        V++       ++FA 
Sbjct: 890  DKVPAVVCNKRTIESLIKAGAFDSLEASRRALLVVHEQAVDSVITVKRKEAEGQFDLFAG 949

Query: 930  EKGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
              G   D      + +      +   +   E+ +LG Y S HPL   + +L +       
Sbjct: 950  FGGDDDDAGMSFSVDVPDLPDWDKKQKLAFEREMLGLYVSDHPLSGLEHVLTRAADTSIA 1009

Query: 985  ESV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +        + + +A ++ S Q+K ++ G+    VT  +     E  FF
Sbjct: 1010 TLMGDEGRPENSTVTVAGLITSLQRKMSKNGNPWAAVTVEDLEGSVEVMFF 1060


>gi|167844904|ref|ZP_02470412.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei B7210]
          Length = 1109

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+
Sbjct: 110  YRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   
Sbjct: 230  RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GL+ RL Q    +         Y QRLDFE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++   +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ A
Sbjct: 826  GKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R QLL S+    + A+    N       +F    G  + +  L      + 
Sbjct: 886  GAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + + 
Sbjct: 943  KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022


>gi|167901900|ref|ZP_02489105.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei NCTC
            13177]
 gi|167910136|ref|ZP_02497227.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 112]
          Length = 1104

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+
Sbjct: 110  YRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   
Sbjct: 230  RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GL+ RL Q    +         Y QRLDFE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++   +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ A
Sbjct: 826  GKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R QLL S+    + A+    N       +F    G  + +  L      + 
Sbjct: 886  GAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + + 
Sbjct: 943  KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022


>gi|320457804|dbj|BAJ68425.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp.
            infantis ATCC 15697]
          Length = 1177

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/1061 (32%), Positives = 538/1061 (50%), Gaps = 52/1061 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H+ YSLL+GA  + ++  + A    PA+ ITD  N+  A E      A G++PIIG 
Sbjct: 3    LHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCVANGVKPIIGI 62

Query: 74   QLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
            +  +  +                     +    +  + +     EG   LI+  S   L 
Sbjct: 63   EAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSVANLE 122

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181
             +  +  R+    L    ++G+I  +G  SG I           A +    F+ +FG D 
Sbjct: 123  GRVMRYPRMDKEVLATY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFGKDN 181

Query: 182  LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             ++ L  H    +      ++ +A     PL+ATN+S ++  ED +A D ++ +   + +
Sbjct: 182  FFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAMLCINSGSRL 241

Query: 241  SQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
               DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H           
Sbjct: 242  DDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLVIAERCNVMFDDHEDGAFMPKFPC 301

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +    +E +    K   GLE R        G    D  ++ D+E  VI +M+F GYFL+
Sbjct: 302  PEG--WDETSLFLKKVEEGLEKRY------DGNPPLDVLKQADYECGVICQMQFCGYFLV 353

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+R+S+PD D
Sbjct: 354  VADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVSLPDID 413

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S  +++ K +
Sbjct: 414  VDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKVTKAL 473

Query: 480  PN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            P        +SL  I D +         FRE   +DP   R+ E ++ +EGL R    HA
Sbjct: 474  PPAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITEEAKGIEGLIRQTGVHA 533

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               ++G  P++   P+  +       T F     E  GL+K DFLGL  LT++  +L  +
Sbjct: 534  CATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIHDTLKNI 592

Query: 590  AQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
                   +D + IP DD ETY L++   TLG+FQL+S GMR  L+ ++PD   DI AL++
Sbjct: 593  VANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFNDISALIA 652

Query: 649  LYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIAQLL 702
            LYRPGP+       Y  RKNG +KI  IHP ++  LK+    T G+IIYQEQV   A++L
Sbjct: 653  LYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQSAARIL 712

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  +  ++++L  F+ Y FN
Sbjct: 713  AGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPFSGYAFN 772

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            K+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+  IQ++ P VN
Sbjct: 773  KAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQVLSPDVN 832

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDSKKLNRR 880
                ++    + + + L AI+ VG      I+         F +  DF  RV    LNRR
Sbjct: 833  ESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPLTALNRR 892

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--- 937
            ++ESL+ AGA D    +R  L    +        +++ +     ++F+  +   ++    
Sbjct: 893  LVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDGGAEAMGD 952

Query: 938  --ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR---- 991
              +T+      +   +   E+ +LG Y S HPL   + IL  +        V   R    
Sbjct: 953  ASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVDRARTMGE 1012

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            G  + LA +V +  ++ ++KG+    VT  +     +  FF
Sbjct: 1013 GQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSVQCMFF 1053


>gi|167814912|ref|ZP_02446592.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 91]
          Length = 1107

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+
Sbjct: 110  YRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   
Sbjct: 230  RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GL+ RL Q    +         Y QRLDFE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++   +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ A
Sbjct: 826  GKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R QLL S+    + A+    N       +F    G  + +  L      + 
Sbjct: 886  GAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + + 
Sbjct: 943  KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022


>gi|224282597|ref|ZP_03645919.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum NCIMB
            41171]
 gi|310287058|ref|YP_003938316.1| DNA polymerase III, alpha subunit [Bifidobacterium bifidum S17]
 gi|313139756|ref|ZP_07801949.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum NCIMB
            41171]
 gi|309250994|gb|ADO52742.1| DNA polymerase III, alpha subunit [Bifidobacterium bifidum S17]
 gi|313132266|gb|EFR49883.1| DNA polymerase III subunit alpha [Bifidobacterium bifidum NCIMB
            41171]
          Length = 1189

 Score =  739 bits (1908), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/1071 (32%), Positives = 549/1071 (51%), Gaps = 59/1071 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L  H+ YSLL+GA  + +++ ++     PA+ ITD  N+  A E  + A  +G++PI
Sbjct: 5    FVQLHNHTHYSLLDGASKVPDLVKRVKELGMPAVGITDHGNMHGAYELWRAAVDSGVKPI 64

Query: 71   IGCQLDIDMQD------------------NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            IG +  +  +                            +    +  + +     EG   L
Sbjct: 65   IGIEAYVTPETARQDKTRVSWDTNWTPVPGHARNPDDVSGGGLITHLTMWAENDEGLVNL 124

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
            I+  S   L  +  +  R+    L    ++G+I  +G  SG I           A +   
Sbjct: 125  IKASSVANLEGRVMRYPRMDKEVLSTY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAAG 183

Query: 173  TFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             F+ +FG D  Y+ L  H    +      ++ +A     PL+ATN+S ++ E D +A D 
Sbjct: 184  EFQDIFGKDNFYIELMDHGLSIESKVTGDLLTIAKKLGAPLLATNDSHYVMEADKDAQDA 243

Query: 231  LMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
            ++ +     +   +R +     +Y+K+  EM  +F D P+A +NT+EIA RC+ I   H 
Sbjct: 244  MLCINSGATLDDPNRFKFEGSGYYIKSAEEMRELFKDHPDACDNTLEIAERCNVIFDDHE 303

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                       +    +E +    K   GLE R        G    +  ++ D+E  VI 
Sbjct: 304  DGAFMPQFDCPEG--WDETSLFLKKVEEGLEKRY------DGNPPMEVLKQADYECGVIC 355

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M+F GYFL+VAD+I WAK++ + VGPGRGS AG++ AYA+ IT++DPL+  L+FERFLN
Sbjct: 356  QMQFCGYFLVVADYINWAKEHGVMVGPGRGSAAGAMVAYAMGITELDPLKHGLIFERFLN 415

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+S+PD D+DF  + R  V+ YV +KYGH++VAQ + +G+++ K AL+D  R +  P+
Sbjct: 416  PERVSLPDIDVDFDPEGRMRVLGYVADKYGHDKVAQCVIYGTIKTKQALKDSARIMGFPF 475

Query: 470  SQVDRLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
                R+ + +P        +S+  I D S         +RE   +DP V R+ E ++ +E
Sbjct: 476  EMGTRITEALPPAATGGKDISVHDIFDPSAKRYAEAREYRELYDSDPEVKRITEEAKGIE 535

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HA   ++G  P++   P+  +       T F     E  GL+K DFLGL  L
Sbjct: 536  GLIRQTGVHACATIMGSAPITDTSPL-LERTDGTVTTTFEYHTCETLGLVKMDFLGLSNL 594

Query: 580  TLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T+++ +L  +       +D + IP DD ETY LL+   TLG+FQL+S GMR  L+ ++PD
Sbjct: 595  TVIRDTLTNIEHNGKGVIDYTKIPLDDRETYQLLSRGDTLGVFQLDSDGMRSLLKTLKPD 654

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692
               DI AL++LYRPGP+       Y  RKNG +KI  IHP +D  LK+    T G+IIYQ
Sbjct: 655  NFNDISALIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELDEPLKQVLDETYGLIIYQ 714

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  A  I+E+
Sbjct: 715  EQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEAAEAIWEI 774

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N  K   +  +AR+ 
Sbjct: 775  LVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKNKTALYLGEARRM 834

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCS 870
             IQ++ P VN    ++    + + + L AI+ VG    + I+         + +  DF  
Sbjct: 835  GIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGENAVKDIIAERETGRGKYVNFMDFIR 894

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            RV    LNRR++ESL+ AGA D    +R  L    ++       +++ +     ++F+  
Sbjct: 895  RVPLTALNRRLVESLIKAGAFDSIDPNRRALFTVHESAIDSVVGLKRKQAEGQFDLFSDT 954

Query: 931  KGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            + + +D      + +      +   + + E+ +LG Y S HPL   + +L  M       
Sbjct: 955  EDSGADAMGDATVAVPDIEEWDKKDKLKFERDMLGLYVSDHPLSGMQAVLAGMREMSIAH 1014

Query: 986  SVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +        G  + LA ++ +  ++ ++KG+    VT  +     +  FF
Sbjct: 1015 LIDRAPTMPSGQQVTLAGLITNVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1065


>gi|167718737|ref|ZP_02401973.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei DM98]
          Length = 1103

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+
Sbjct: 110  YRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   
Sbjct: 230  RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GL+ RL Q    +         Y QRLDFE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++   +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ A
Sbjct: 826  GKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R QLL S+    + A+    N       +F    G  + +  L      + 
Sbjct: 886  GAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + + 
Sbjct: 943  KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022


>gi|126453191|ref|YP_001065485.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 1106a]
 gi|242315814|ref|ZP_04814830.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106b]
 gi|254298453|ref|ZP_04965905.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 406e]
 gi|126226833|gb|ABN90373.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106a]
 gi|157808232|gb|EDO85402.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 406e]
 gi|242139053|gb|EES25455.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106b]
          Length = 1174

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+
Sbjct: 110  YRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGGEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   
Sbjct: 230  RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GL+ RL Q    +         Y QRLDFE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++   +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ A
Sbjct: 826  GKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R QLL S+    + A+    N       +F    G  + +  L      + 
Sbjct: 886  GAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + + 
Sbjct: 943  KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022


>gi|56179800|gb|AAV82522.1| DNA polymerase III alpha subunit [Idiomarina loihiensis L2TR]
          Length = 1142

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/1031 (39%), Positives = 588/1031 (57%), Gaps = 37/1031 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G   +  I + +A    PA+AITD  N    + +  KA   G++P+IGC   +    
Sbjct: 1    MIDGLAKVGPICEAVAEAGMPALAITDQMNFCGLVRYYGKAHQLGLKPLIGCDFWV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q   P   +  +  L    EGYQ++ +L+S+ YL    K    I   WL+E   
Sbjct: 57   ------QADYPESEIFRLTALAMDNEGYQQITQLISKAYLRGNIKGKPVIDKDWLKE-HN 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-GYDRYRESQV 200
            EG+I+L+G   G + +A         +  L  +++ F DR Y+ L R     +     + 
Sbjct: 110  EGIILLSGSRQGDVGQALIKGHDSQLDAALDFYQQYFPDRYYLELVRTGRPQEENYLHKA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V LA    LP+VATN  +FL EED++AH++ +A+     +  K RP+  +P  YL++  E
Sbjct: 170  VALAGETGLPVVATNEVVFLKEEDFDAHEIRVAIHDGYQLEDKRRPKKYSPQQYLRSSEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+PEA+ENTVEIA+RC+  +++           +        E  L   +  GL
Sbjct: 230  MSELFSDIPEAIENTVEIAKRCNVTVRLGEYF-----LPKFPTGDLTTEEFLIKVSEEGL 284

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL      A  +     +Y +RL  EL VI  M F GYFLIV +FIQW+K N IPVGP
Sbjct: 285  EERLEFLFPDAEEREQKRPEYDERLKRELGVINDMGFPGYFLIVMEFIQWSKDNGIPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC DRRDEVI +V +
Sbjct: 345  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAD 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG E V+QIITFG++ AKAA+RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405  LYGREAVSQIITFGTMAAKAAIRDVGRVLAHPYGFVDRISKLIPGDPGMTL-AKAFEIEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +   A   D  V  ++++++ LEG+ R+A  HA G+VI    ++   P+Y D   + PVT
Sbjct: 464  QLGAAYDQDEEVKAIIDMARILEGVTRNAGKHAGGVVISPTKITDFSPLYCDDEGNNPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
            QF+   +E AGL+KFDFLGL+TLT++Q ++D + +R        +D++ I   D   + L
Sbjct: 524  QFDKDDVESAGLVKFDFLGLRTLTIIQWAVDMVNRRHAKSGKDPIDITSIDLTDPACFKL 583

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YNNR 664
            L    T  +FQLES GM++ ++ + PD  EDIIALV+L+RPGP+ + +V       +   
Sbjct: 584  LKKAETTAVFQLESRGMKELIKKLLPDSFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +         H  + P+L+ T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EE
Sbjct: 644  EISYPDAEYQHESLQPILEPTYGVILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEE 703

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+E F  GA++N I   +A  IF+L+ KFA YGFNKSH+AAYA++SYQT WMKTH+P
Sbjct: 704  MAKQREIFAKGAAQNNIDPELATKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWMKTHFP 763

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA M+ +MDN +KI     +  +  + ++PP VN     F V +  R+ Y + AIK
Sbjct: 764  AEFMAAVMSADMDNTDKIVTLADECERMGLDLLPPDVNKGEYKFTVDEQQRVVYGIGAIK 823

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I++A     PF  L DFC RVD K++N+R+L+ L+ AGA+D  G  R  L+
Sbjct: 824  GVGEAPIESIIKARQEGGPFRDLFDFCCRVDLKRMNKRILQRLIRAGAMDNLGPHRASLM 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             +L+   + A+           ++F        + +         + +V  E E+  LG 
Sbjct: 884  ATLEKAIRQAEQHLNAEKIGQSDMFGVLTTEPEAVEQEFVSVRKWSEAVWLEGERDTLGL 943

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y +GHP++ ++  L+            T +  +I +A +V+  +    ++G R   VT  
Sbjct: 944  YLTGHPINRFRAELKHYINSTLSNVTPTRKDESIAIAGLVIDVRVLTNKRGQRFAIVTLD 1003

Query: 1022 EPAKEYEANFF 1032
            +     +   F
Sbjct: 1004 DKTARMDVRLF 1014


>gi|313680738|ref|YP_004058477.1| DNA polymerase III subunit alpha [Oceanithermus profundus DSM 14977]
 gi|313153453|gb|ADR37304.1| DNA polymerase III, alpha subunit [Oceanithermus profundus DSM 14977]
          Length = 1222

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1087 (37%), Positives = 590/1087 (54%), Gaps = 75/1087 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAA---DQQPAIAITDTNNLFSALEFSQKACAAGI 67
            F HL  H+ +SLL+GA  L+ ++  +     D  PA+A TD  NLF A++F +KA AAG+
Sbjct: 3    FAHLHQHTQFSLLDGAAKLDELIQWVKQTTPDD-PALATTDHGNLFGAVQFYKKATAAGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIG +  +  +     T + K        + LL    +GYQ L+ L SR YL +    
Sbjct: 62   KPIIGYEAYVAAESRFDRTMR-KGLDGGYFHLTLLAKDFKGYQNLVRLASRAYL-EGFYM 119

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              RI    L+E   EG+I L+G     I +    +   +AE+RL  + ++FGDR ++ +Q
Sbjct: 120  KPRIDREILRE-HNEGIIALSGCLGAEIPQFILADREDLAEERLNEYLEIFGDRYFIEIQ 178

Query: 188  RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   ++    + + + A  + L +VATN+  ++ +ED  AH+VL+A+     ++ +DR 
Sbjct: 179  DHGLEEQKKVNAVLREFAQKYGLGMVATNDGHYVKQEDARAHEVLLAIQSKATLADEDRW 238

Query: 247  RVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            +   D  Y+K   EM     D P+ + +          +       +   I +      +
Sbjct: 239  KFPCDEFYVKTPEEMKKALPDWPDEIFSNSAEIAAMCNVELPVGDKMTYRIPRYPLPEGR 298

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHA------------------------------- 334
            +E   LR     GL  R         Y A                               
Sbjct: 299  DENQYLRELTFKGLLERYPDRVNPALYRAYLTRLEIEPAEDEEDLILQLARLDRKARERV 358

Query: 335  ---QDYR-----------QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                D R            R ++EL  I +M F GY LIV D+I WAK + I VGPGRGS
Sbjct: 359  DFFPDVRNVQEWDGWATLARAEYELGTIEQMGFPGYLLIVQDYINWAKNHGISVGPGRGS 418

Query: 381  GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
             AGS+ AYA+ IT+IDPL F LLFERFLNP R+SMPD D DF   RRDEVI YV+ +YG 
Sbjct: 419  AAGSLVAYAIRITNIDPLEFGLLFERFLNPARVSMPDIDTDFSDVRRDEVIDYVRERYGE 478

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQAIADDSRFR 499
            ++VAQI TFG+L +KAAL+DV R   + Y + ++L KLIP     P+   +A+      +
Sbjct: 479  DKVAQIATFGTLASKAALKDVARVYGLEYKRAEQLAKLIPVQFGKPLPLARAMEQIPELK 538

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
             A   D +V  +LEI+Q+LEGL RHAS HAAG+VI D PL+ LVP+ RD R D  VTQ++
Sbjct: 539  AAMRQDETVREVLEIAQRLEGLNRHASVHAAGVVIADEPLTNLVPLMRDTRGDGVVTQYD 598

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTL 618
            M  +E  GL+K DFLGL+TL+ L ++   + +      D   +P DD +T+ +L    T 
Sbjct: 599  MGSVEALGLLKMDFLGLRTLSFLDEAKRIVKESAGVELDYDNLPLDDPKTFEMLGRGDTK 658

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH--- 675
            G+FQLE +GM   ++  +P+ + DIIA+VSLYRPGP+DNI  Y  R++G+E +       
Sbjct: 659  GVFQLEGTGMTNTVKAFKPERLHDIIAIVSLYRPGPMDNIPTYLRRRHGQEPVSYAEFPH 718

Query: 676  --PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
               +++P+L ET G+ +YQEQ+MQIA  ++GY+L EAD+LRRAMGKK  EE+   ++RFI
Sbjct: 719  AAEMLEPILAETYGIPVYQEQIMQIASAVAGYTLGEADLLRRAMGKKKVEELKAHRDRFI 778

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +GA K G+    A  IF+LL  FA+YGFNKSHAAAY++ISYQTA++K H+PVEF+AA +T
Sbjct: 779  TGAEKRGVPPDEASRIFDLLEAFANYGFNKSHAAAYSLISYQTAYVKAHFPVEFMAALLT 838

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
            +E  N +K+ ++ +DA    I ++PP +N    DF+V    I + L+A+K VG      I
Sbjct: 839  VERRNSDKVAEYIRDAEAGGIHVLPPDINRSGADFRVVGREILFGLSAVKNVGEGAVESI 898

Query: 854  M-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            + E     PF SL DF  RVD   +N+R LESL+ AGA D FG  R Q+L +++ + K+A
Sbjct: 899  LNEREKGGPFRSLPDFLRRVDLHHVNKRALESLIKAGAFDAFGE-RGQMLDAMEGLLKWA 957

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
               ++        +F         +  L + +     +R   E+  LG Y +GHPL+ Y 
Sbjct: 958  AAEQQKAAGGLTGLFDD----GLTEPPLPETAPLEEVIRLRFEKEALGIYVTGHPLEHY- 1012

Query: 973  PILRKMGIKGYEESVATIR-----GNNIRL--AAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            P L +       E            + +R+  A MV    ++ TR G  +     ++ + 
Sbjct: 1013 PGLAEAATCQVTELARWYEQNSGSKSRVRVLLAGMVEQITRRSTRSGGMMARFNLADASG 1072

Query: 1026 EYEANFF 1032
              E   F
Sbjct: 1073 ALEVVVF 1079


>gi|120611898|ref|YP_971576.1| DNA polymerase III subunit alpha [Acidovorax citrulli AAC00-1]
 gi|120590362|gb|ABM33802.1| DNA polymerase III, alpha subunit [Acidovorax citrulli AAC00-1]
          Length = 1190

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1058 (39%), Positives = 599/1058 (56%), Gaps = 57/1058 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL++H+ +S+++G   ++ +    + D QPA+AITD +NLF A++F ++A   G++
Sbjct: 9    PMFVHLRLHTEFSVVDGTARIDEVAKAASKDGQPALAITDLHNLFGAIKFYKEARGKGVK 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            P++G ++ I+ +          T       I+LL    +GY  L E+++R +  +  K  
Sbjct: 69   PVLGAEVSIEPE----------TAGGPPGRILLLAQGRQGYLNLCEMLARAWTRNVVKNV 118

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                  WLQE+G + LI L+G  +GP+ +AF       A +  L    +F  R Y+ LQR
Sbjct: 119  PLCTWEWLQELGGD-LIALSGAQAGPVGQAFTRGDEAGAARVALRLAGIFPHRFYLELQR 177

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246
              R  D  +    VQLA    LP+VAT  + FL+ +DYEAH+  + +A   +++   R  
Sbjct: 178  AGRPEDESQVVAAVQLAARLNLPVVATQPTQFLTADDYEAHEARVCIAEGEILANPRRVR 237

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R T + Y K+ ++M ++F+D+P A+ NT+EIA+RCS  L +  P LP F       I   
Sbjct: 238  RFTREQYFKSSAQMEALFADVPTAIANTLEIAKRCSLTLVLGKPRLPDFPTPNGMPI--- 294

Query: 307  EENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             E   R  +  GLE     L      +      Y +RL+FEL  I +M F GYFLIV DF
Sbjct: 295  -EEYFRYASFEGLEERLKHLFPNEAEREKQRPRYVERLEFELGTILKMGFPGYFLIVGDF 353

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK+N  PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFC
Sbjct: 354  IQWAKQNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFC 413

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            Q  RD VI YV++KYG   V+QI TFG++ AKAA+RDVGR + M Y+  D + KL+P  P
Sbjct: 414  QSNRDRVIDYVKDKYGKNAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKP 473

Query: 484  AHPVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
                +                A+  +    E    +  V  ++E++QKLEG+ R+   HA
Sbjct: 474  GMSYTLAYPPEVKKEGDKNNYALELEPMLYERVRKEEDVKTVIEMAQKLEGMTRNIGMHA 533

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
             G++I    L+   P+Y+   S+  V+Q++   +E  GL+KFDFLGL TLT+L+ + +F+
Sbjct: 534  GGVLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFI 593

Query: 590  AQRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             +R           IP DD  TY L +   T  +FQ ES GM+  L+  +P  +ED+IAL
Sbjct: 594  MKRHKGQENFAFENIPLDDAPTYRLFSEGKTEAVFQFESRGMQGMLKEARPSRLEDLIAL 653

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
             +LYRPGP+D I  + NRK+GKE +   HPL++P+L ET G+++YQEQVMQ AQ+L GYS
Sbjct: 654  NALYRPGPMDLIPTFVNRKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYS 713

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM + +E F  GA++ GI +  A  +F+L+ KFA YGFNKSHA
Sbjct: 714  LGGADMLRRAMGKKKAEEMAEHREIFRKGAAEKGIGQDKADEVFDLMEKFAGYGFNKSHA 773

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAY++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA +  +   PP VN    
Sbjct: 774  AAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLYEDAMKMGLTFEPPDVNRGMY 833

Query: 827  DFK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSK 875
             F+ V D  I Y L A+KG G      I+ A              PF SL DFC+RVD  
Sbjct: 834  RFEPVTDKVIRYGLGAVKGTGQQAIEAIIAAREGRGVGPRGDTKGPFASLFDFCARVDRT 893

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEK 931
            +LN+R LE+L+ AGA D    +R  L+ S+D    +A  +  N       +F        
Sbjct: 894  RLNKRTLEALIKAGAFDAIEMNRASLVASIDRAFDFANSLIAN--ANQGGLFDMMGDDAH 951

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
            G+ +    L +        R   E+  +GFY SGH  D  +  +R+      EE   +  
Sbjct: 952  GSSTQDPALVEMLPWGVKERLTQEKTAVGFYLSGHLFDEVEKEVRRFVRTPIEELADSRE 1011

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 +A +V   +    ++G R+      + +   EA
Sbjct: 1012 PQ--IMAGIVSDFRVINGQRG-RLALFKLDDKSAMIEA 1046


>gi|289642708|ref|ZP_06474847.1| DNA polymerase III, alpha subunit [Frankia symbiont of Datisca
            glomerata]
 gi|289507451|gb|EFD28411.1| DNA polymerase III, alpha subunit [Frankia symbiont of Datisca
            glomerata]
          Length = 1187

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/1073 (30%), Positives = 541/1073 (50%), Gaps = 52/1073 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K  SFVHL VH+ YS+L+GA  +  +  + A    PA+ +TD  N+F + EF Q A  
Sbjct: 1    MSKGDSFVHLHVHTEYSMLDGAAKVGLLFAEAARLGMPAVGMTDHGNMFGSYEFHQAAKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVLLVSTAE 107
            AG++PIIG +  +  +                           +       + +L + ++
Sbjct: 61   AGVKPIIGIEAYVAPEARHHKKPVFWGDGGQRDADPDGEGGDVSGGGAYTHMTMLAANSK 120

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            G + L  L S   L D   +  R+    + E   EG+I  TG  SG +      N    A
Sbjct: 121  GLRNLFRLSSIASL-DGYYRKPRMDQELIAE-HAEGIIATTGCPSGVVQTRLRLNQFDRA 178

Query: 168  EKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
             +   T++ +FG +  ++ L  H    +R     ++ +A   +L  +ATN+S +++++  
Sbjct: 179  VEAAATYRDIFGPENYFLELMDHGLAIERKVRDGLLDIARRLDLRPLATNDSHYVTKDQA 238

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            ++H  L+ V     +    R R   D Y     E +    D          +        
Sbjct: 239  DSHSALLCVGTGKRLDDPKRFRFDGDGYYLKSPEEMRDMWDGQVPGACDSSLLIAERVQP 298

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                      + +      +++ + LR +   G+E R            Q+   R+++E+
Sbjct: 299  YDDVFAYVDRMPRFPVPEGEDQLSWLRKEVARGVEHRFGAN------PPQEVLDRVEYEI 352

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             VIA M F  YFL+VAD  ++A++  I VGPGRGS  GS+ +Y L +T++DP+   L+FE
Sbjct: 353  GVIANMGFPAYFLVVADICRYAREKGIRVGPGRGSATGSMVSYVLGVTELDPIEHRLIFE 412

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R++ PD D+DF + RR ++IRYV  +YG +RV QI+TFG+++AKAA++D  R L
Sbjct: 413  RFLNPERITPPDIDLDFDERRRGDMIRYVTERYGEDRVCQILTFGTIKAKAAIKDSCRVL 472

Query: 466  QMPYSQVDRLCKLIPND---PAHPVS------LQAIADDSRFREARLADPSVDRLLEISQ 516
              PY+  D++ K +P D      P+S       +  ++ +  R    +D  V ++++ ++
Sbjct: 473  GYPYALGDKITKAMPPDVFGKGIPLSGILDPAHERYSEAAEVRGLYESDQDVRKIVDTAR 532

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             LEGL R    HAAG+++   PL  ++P++R       +T F     E  GL+K DFLGL
Sbjct: 533  GLEGLTRGTGVHAAGVILCSEPLLDVLPIHRRDADGAIITGFPFPQCEDMGLLKMDFLGL 592

Query: 577  KTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            + LT++  ++      RG+ +DL  +P  D  T+ L+    TLG+FQL+   MR  L  M
Sbjct: 593  RNLTVIDDAIINVRKNRGIDIDLQKLPLADTPTFQLMARGDTLGVFQLDGGPMRSLLRLM 652

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVI 689
             P   EDI A+++LYRPGP+  ++ + Y +RKNG++ +  IH  +   L++    T  ++
Sbjct: 653  APTKFEDIAAVLALYRPGPMAANSHIEYADRKNGRKPVTPIHTELKDRLEDILGETYHLV 712

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVM IA+ L+GY+L  AD+LRRAMGKK KE +D     F++G ++N  S   A  +
Sbjct: 713  VYQEQVMTIARELAGYTLGRADLLRRAMGKKKKEVLDANHAEFMAGMAENSYSTEAAQAL 772

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +++L  F+ YGFNKSH A Y V+S+ TA++K ++P E++AA +T   D+ +K+  +  + 
Sbjct: 773  WDVLVPFSGYGFNKSHTAGYGVVSFWTAYLKANFPAEYMAALLTSVGDDKDKMAVYLAEC 832

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDF 868
            R+  I+++PP VN   + F   D+ I + L AI+ VG      I  +      + S  DF
Sbjct: 833  RKMGIRVLPPDVNESTLYFTPVDDDIRFGLGAIRNVGANVVASIAASRERKGDYASFPDF 892

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              +V+    N+RV++SL+ AGA D  G++R  L Q  ++        ++N      ++F 
Sbjct: 893  LEKVEIAVCNKRVVDSLIKAGAFDSLGHNRRALSQVHESAIDAVIGTKRNEAFGQFDLFG 952

Query: 929  HEKGTFSDKITLEKF------SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
                   D+            +    S     E+ +LG Y S HPL+  + IL +     
Sbjct: 953  GGGDDEPDESMKIGLGLDLSATEWPRSELLAQEREMLGLYVSSHPLEGTQRILDRNRDTR 1012

Query: 983  YEESVAT-IRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEANFFP 1033
              + + +      +++A ++    ++  +  G+    VT  +     E  FFP
Sbjct: 1013 IIDLLDSGRSEGEVQIAGVIAKIDRRVNKNNGNLWAIVTVEDLDASVEVLFFP 1065


>gi|167893446|ref|ZP_02480848.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 7894]
          Length = 1105

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+
Sbjct: 110  YRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGGEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   
Sbjct: 230  RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GL+ RL Q    +         Y QRLDFE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++   +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ A
Sbjct: 826  GKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R QLL S+    + A+    N       +F    G  + +  L      + 
Sbjct: 886  GAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + + 
Sbjct: 943  KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022


>gi|295675964|ref|YP_003604488.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1002]
 gi|295435807|gb|ADG14977.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1002]
          Length = 1196

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1046 (38%), Positives = 599/1046 (57%), Gaps = 39/1046 (3%)

Query: 5    LE--KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            +     P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A
Sbjct: 1    MSPMSDPRFVHLRVHSEFSIADGIVRLDDIVAAAAKDGQGALALTDLGNAFGLVRFYKEA 60

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               G++PI GC + I   D+                ++LLV    GY  L EL+S+  L 
Sbjct: 61   RGKGVKPIAGCDVWITNPDDRDKP----------SRLLLLVKDRRGYLNLCELLSKASLT 110

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +Q +    I   WL+    EGL+ L+G   G I  A    + + A++    + K+F    
Sbjct: 111  NQYRGRAEIEAGWLETGLGEGLLALSGAQQGDIGLALAAGNEEAAKRNARHWAKVFPGGF 170

Query: 183  YVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ LQR+          Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++
Sbjct: 171  YIELQRYGQPGGEQYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILA 230

Query: 242  QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               R  R T + Y + + EM ++F+D+P AL NTV+IA+RC+  L++  P LP F   + 
Sbjct: 231  NPRRQKRFTSEQYFRTQQEMATLFADIPSALANTVQIAKRCNLTLELGKPKLPLFPTPDG 290

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYF 357
              +    ++ L   +  GLE RL Q    +         Y QRL+FE   I +M F GYF
Sbjct: 291  MSL----DDYLVQLSKEGLEKRLEQLYPDEAERDAQRPTYYQRLEFECGTIIKMGFPGYF 346

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPD
Sbjct: 347  LIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPD 406

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ  RD VI+YV+ KYG   V+QI TFG++ AKAA+RD+GR L + Y   D + K
Sbjct: 407  FDIDFCQHGRDRVIQYVKEKYGANAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAK 466

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP  P   V++   + ++   +E    +  V +LLE++Q++EGL R+   HA G++I  
Sbjct: 467  LIPFKPGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAP 526

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593
              L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +     
Sbjct: 527  GKLTDFCPLYTQGDDSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 586

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L  +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPG
Sbjct: 587  QDWSLGQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPG 646

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  +  RK+G+E +    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+L
Sbjct: 647  PMDLIPSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 706

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  EEM + +E F  GA++NG+++  +  IF+L+ KFA YGFNKSHAAAYA+++
Sbjct: 707  RRAMGKKKPEEMAQHREIFAEGAARNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLA 766

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            Y TAW+K H+P EF+AA+M+L MD+ +K+K   +D     + ++PP VN     F+    
Sbjct: 767  YYTAWLKAHHPAEFMAANMSLAMDDTDKVKILFEDCLANKMAVLPPDVNLSAYRFEPVAE 826

Query: 834  R-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                    I Y L AIKG G      I+ A  D  F  + DFC+RVD + +NRR +E+L+
Sbjct: 827  ADGKRSRTIRYGLGAIKGSGQNAIEEILRAREDGRFIDIFDFCNRVDRRIVNRRTIEALI 886

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AGA D    +R QL+ S+    + A+    N       +F       S    L      
Sbjct: 887  RAGAFDTLHANRAQLIASVSLAMEAAEQAAANALQ--AGLF-DMGDAPSQGHELVDEPEW 943

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                + + E+  LGFY SGH  D YK  +R+   +   E           +A ++VS + 
Sbjct: 944  PEKRKLQEEKAALGFYLSGHLFDAYKDEVRRFVRQKIGELKEGRDK---LVAGVIVSLRT 1000

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + T++G  +      +   + E   F
Sbjct: 1001 QMTQRGK-MLIALLDDGTGQCEVTVF 1025


>gi|158314206|ref|YP_001506714.1| DNA polymerase III subunit alpha [Frankia sp. EAN1pec]
 gi|158109611|gb|ABW11808.1| DNA polymerase III, alpha subunit [Frankia sp. EAN1pec]
          Length = 1178

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1068 (33%), Positives = 564/1068 (52%), Gaps = 50/1068 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S  FVHL VH+ YS+L+GA  L ++ ++++    PA+AITD   ++ A +F ++A A
Sbjct: 1    MPNS--FVHLHVHTEYSMLDGAARLKDMFNEVSRQGMPAVAITDHGYMYGAYDFYKQATA 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG++PIIGC+  +  +  L                 +   +   + +    AEG   L  
Sbjct: 59   AGVKPIIGCEAYVAPESRLLKQRVRWGEPHQKSDDVSGGGSYTHMTIWARNAEGLHNLFR 118

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L SR  +     +  R+    + E    GL+  TG  SG +           A K   T+
Sbjct: 119  LNSRASIEGHYIKWPRMDQEIISE-HAAGLMATTGCPSGEVQTRLRLGQYDAALKAAATY 177

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            ++++G D  Y  +  H    +R     +V +A   ++  V TN+S +  E +   H  L+
Sbjct: 178  QEIYGRDNYYCEIMDHGIEIERRVRDGLVDIARALDMRFVVTNDSHYTYESERTTHAALL 237

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             V  ++ V+          ++LK+  +M +I  D  +A +   E     +  +       
Sbjct: 238  CVQTASTVANPSFQFEGSGYFLKSAEQMYAI--DTSDAWQQGCETTLMIAERVDPAGMFT 295

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             + +         + +E+  R +  AG+  R   G        +++R R+++EL VI  M
Sbjct: 296  KQNLMPRFPVPEGETDESWFRKETWAGMARRFPDGFD------EEHRARVEYELGVILAM 349

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFL+VADFI WAK   IPVGPGRGS AGS+ A+AL ITD+DP+  SLLFERFLNPD
Sbjct: 350  GFPSYFLVVADFIMWAKSQGIPVGPGRGSAAGSMVAFALGITDLDPIPHSLLFERFLNPD 409

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR +VIRYV  K+G +R+AQI+T+G+++AKAA++D  R L  PY+ 
Sbjct: 410  RVSMPDIDIDFDERRRGDVIRYVTEKWGDDRIAQIVTYGTIKAKAAIKDSSRVLGYPYAV 469

Query: 472  VDRLCKLIPN-DPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DR+ K +P       +             ++    R    +D  V ++++ ++ LEGL 
Sbjct: 470  GDRITKAMPPAVMGKDIPLGGIFDPKHPRYSEAGEIRGLYESDADVRKVIDTAKGLEGLI 529

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R A  HAAG+++   P+   +P++R       +TQF+    E  GL+K DFLGL+ LT++
Sbjct: 530  RQAGVHAAGVIMSAEPIIDHIPVWRRDADGAIITQFDYPTCENLGLLKMDFLGLRNLTVM 589

Query: 583  QKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++    A RG K+DL  +  +D  +Y LL    TLG+FQL+   MR  L  M+PD  E
Sbjct: 590  DDAVRNVEANRGFKIDLMGLELNDAASYELLARGDTLGVFQLDGGPMRSLLRMMRPDNFE 649

Query: 642  DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQV 695
            DI A+++LYRPGP+  ++ + Y  RKNG+++I  IHP +       L  T G+I+YQEQV
Sbjct: 650  DISAVLALYRPGPMGANSHINYALRKNGQQEITPIHPELAEPLADILDTTHGLIVYQEQV 709

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M IAQ ++GY+L +AD+LRRAMGKK KE +DK+   F  G   +G S+     ++++L  
Sbjct: 710  MAIAQKVAGYTLGQADLLRRAMGKKKKEILDKEFVPFSDGMKSSGFSEAAIKTLWDILVP 769

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            F+DY FNK+H A Y ++SY TA++K ++P E++AA +T   D+ +K   +  + R+  I+
Sbjct: 770  FSDYAFNKAHTAGYGLVSYWTAYLKANFPAEYMAALLTSVRDDKDKSAIYLNECRRMGIR 829

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873
            ++PP VNT   D+   GDN I   LAAI+ VG      I+     K  F S  DF  +VD
Sbjct: 830  VLPPDVNTSDADYTAHGDNEIRVGLAAIRNVGINVVESIVRNRKTKSRFTSFPDFLDKVD 889

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +   N+R +ESL+ AGA D  G++R  L++  +        V+K       ++FA +   
Sbjct: 890  AVACNKRTVESLIKAGAFDALGHTRRGLVEKHEQAVDAVMGVKKKNAEGQFDLFAFDGED 949

Query: 934  FSDKIT----LEKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              +       +++FS    + SV   +E+ +LG Y S HPL   + IL      G     
Sbjct: 950  AEEDTAPIFGVQEFSDQEWDKSVLLSHEREMLGLYVSDHPLLGVEHILAAKADCGIASLN 1009

Query: 988  --ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  G+ + +  ++ S Q+K T++G      T  +     E  FFP
Sbjct: 1010 GGDYPDGSVVTIGGIISSLQRKVTKQGKLWALATVEDLEGGLEVMFFP 1057


>gi|167823354|ref|ZP_02454825.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 9]
          Length = 1102

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+
Sbjct: 110  YRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGGEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   
Sbjct: 230  RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GL+ RL Q    +         Y QRLDFE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++   +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ A
Sbjct: 826  GKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R QLL S+    + A+    N       +F    G  + +  L      + 
Sbjct: 886  GAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + + 
Sbjct: 943  KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022


>gi|307700773|ref|ZP_07637798.1| DNA polymerase III subunit alpha [Mobiluncus mulieris FB024-16]
 gi|307613768|gb|EFN93012.1| DNA polymerase III subunit alpha [Mobiluncus mulieris FB024-16]
          Length = 1270

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/1071 (32%), Positives = 548/1071 (51%), Gaps = 52/1071 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S  FVHL VH+ YS+L+GA  +  +++K A + Q A+AITD   LF A EF   A  
Sbjct: 1    MASS-DFVHLHVHTDYSILDGAAKVARLVEKAAENGQSAVAITDHGYLFGAYEFYAAAVK 59

Query: 65   AGIQPIIGCQLDIDMQD-------------NLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
             G++PIIG +  +                   +      +       + LL  T EG   
Sbjct: 60   TGVKPIIGLEAYVTPGTSRFDTKRVHWGTLEQQKAGDDVSANGAYTHMTLLSRTTEGMHN 119

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L  L S   +  Q  +  R+    LQ     GL+  +G  SG +           A +  
Sbjct: 120  LFRLGSLASIDGQMGKWPRLDRELLQRY-AGGLVGTSGCPSGEVQVKLRLGLYDEALRTA 178

Query: 172  LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
               + +FG +  Y+ L  H    +R     +++LA   + PL+ATN+S ++++ED E  D
Sbjct: 179  GELQDIFGKEFFYIELMDHGLSIERRVREDLLRLAKALDAPLLATNDSHYVNKEDREIQD 238

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSE-MVSIFSDLPEALENTVEIARRCSFILQVH 288
             ++ +     ++ ++R R     Y    S  M  +F DLP+A +NT+ +A +C       
Sbjct: 239  AMLCINSGDQLNNENRFRFDGTDYYLRPSNEMRELFRDLPQACDNTLLVAEQCEVKFSTV 298

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                  F+ K      + EE+    +   GL  R  QG        +  R+R D+E+ +I
Sbjct: 299  D-DGASFMPKFQVPAGENEESWFVKEVERGLNYRYPQG------ITEAVRKRADYEVGII 351

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F+GYFL+V+D+IQWAK+  I VGPGRGSGAGS+ AYA+ ITD+DPL+  LLFERFL
Sbjct: 352  LQMGFAGYFLVVSDYIQWAKQQGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLLFERFL 411

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D+DF   RR EVI YV  KYG +++AQ++T+G+++ K AL+D  R     
Sbjct: 412  NPERVSMPDIDVDFDDRRRAEVIEYVTRKYGKDKIAQVVTYGTIKTKQALKDAARISGAA 471

Query: 469  YSQVDRLCKL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            +S  + L K   P      +              +   FR+   +      +  ++  +E
Sbjct: 472  FSVGENLTKALPPAAMGKDIPLSQIYNKDHPRYKEAEEFRKVVASTGENQAIFSLASGVE 531

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R    HA  +++    L+ ++PM + ++    +TQF+    E  GL+K DFLGLK L
Sbjct: 532  GMTRQWGVHACAVIMSSHTLTDIIPMMKRLQDGAIITQFDYPTCEHLGLLKMDFLGLKNL 591

Query: 580  TLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  +LD +        DL  +P DD  TY LL++  TLG+FQL+  GMR  L+ ++P 
Sbjct: 592  TIISDALDNIKLNGKTPPDLEHLPIDDRATYELLSSGETLGVFQLDGGGMRTLLKQLRPT 651

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK--IVSIHPLIDPMLK----ETQGVIIYQ 692
              +DI ALV+LYRPGP+      N          I  IHP +   LK     T G+IIYQ
Sbjct: 652  EFDDISALVALYRPGPMGADSHTNYALRKNGAMGIKPIHPELADPLKDILGYTYGLIIYQ 711

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ  +F  G   NG S+     ++++
Sbjct: 712  EQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMLGNGYSEDCCKTLWDI 771

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T +  + +K+  +  + R+ 
Sbjct: 772  LVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQ-TDKDKLGMYLNEVRRM 830

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSR 871
             I+++PP VN     F      I + LA+I+ VG      I++       + S +DF ++
Sbjct: 831  GIRVLPPDVNASVATFAPDGADIRFGLASIRNVGEGVVEGIIKSRRDKGAYTSFQDFLNK 890

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V ++  N+R +ESL+ AGA D FG +R  L+   +        +++  +    ++FA   
Sbjct: 891  VPAEVCNKRAIESLIKAGAFDAFGVARRALVAVHEEAVDSVISLKRQESKGQFDLFASLD 950

Query: 932  GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            G   D      + +          +   E+++LG Y S HPL   + +LR++      E 
Sbjct: 951  GGGDDLLEGFSVEIPALKEWPKKDKLAFERQMLGLYVSDHPLSGMENVLRRLAADQIIEL 1010

Query: 987  VA---TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
             +         +R+A ++ S + K +++ G         + +      FFP
Sbjct: 1011 TSEDGKPNDAEVRIAGLITSVEHKTSKRTGQPWAIARLEDMSGAINVLFFP 1061


>gi|269978157|ref|ZP_06185107.1| DNA polymerase III subunit alpha [Mobiluncus mulieris 28-1]
 gi|269933666|gb|EEZ90250.1| DNA polymerase III subunit alpha [Mobiluncus mulieris 28-1]
          Length = 1270

 Score =  738 bits (1906), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/1071 (32%), Positives = 548/1071 (51%), Gaps = 52/1071 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S  FVHL VH+ YS+L+GA  +  +++K A + Q A+AITD   LF A EF   A  
Sbjct: 1    MASS-DFVHLHVHTDYSILDGAAKVARLVEKAAENGQSAVAITDHGYLFGAYEFYAAAVK 59

Query: 65   AGIQPIIGCQLDIDMQD-------------NLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
             G++PIIG +  +                   +      +       + LL  T EG   
Sbjct: 60   TGVKPIIGLEAYVTPGTSRFDTKRVHWGTLEQQKAGDDVSANGAYTHMTLLSRTTEGMHN 119

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L  L S   +  Q  +  R+    LQ     GL+  +G  SG +           A +  
Sbjct: 120  LFRLGSLASIDGQMGKWPRLDRELLQRY-AGGLVGTSGCPSGEVQVKLRLGLYDEALRTA 178

Query: 172  LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
               + +FG +  Y+ L  H    +R     +++LA   + PL+ATN+S ++++ED E  D
Sbjct: 179  GELQDIFGKEFFYIELMDHGLSIERRVREDLLRLAKALDAPLLATNDSHYVNKEDREIQD 238

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSE-MVSIFSDLPEALENTVEIARRCSFILQVH 288
             ++ +     ++ ++R R     Y    S  M  +F DLP+A +NT+ +A +C       
Sbjct: 239  AMLCINSGDQLNNENRFRFDGTDYYLRPSNEMRELFRDLPQACDNTLLVAEQCEVKFSTV 298

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                  F+ K      + EE+    +   GL  R  QG        +  R+R D+E+ +I
Sbjct: 299  D-DGASFMPKFQVPAGENEESWFVKEVERGLNYRYPQG------ITEAVRKRADYEVGII 351

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F+GYFL+V+D+IQWAK+  I VGPGRGSGAGS+ AYA+ ITD+DPL+  LLFERFL
Sbjct: 352  LQMGFAGYFLVVSDYIQWAKQQGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLLFERFL 411

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D+DF   RR EVI YV  KYG +++AQ++T+G+++ K AL+D  R     
Sbjct: 412  NPERVSMPDIDVDFDDRRRAEVIEYVTRKYGKDKIAQVVTYGTIKTKQALKDAARISGAA 471

Query: 469  YSQVDRLCKL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            +S  + L K   P      +              +   FR+   +      +  ++  +E
Sbjct: 472  FSVGENLTKALPPAAMGKDIPLSQIYNKDHPRYKEAEEFRKVVASTGENQAIFSLASGVE 531

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R    HA  +++    L+ ++PM + ++    +TQF+    E  GL+K DFLGLK L
Sbjct: 532  GMTRQWGVHACAVIMSSHTLTDIIPMMKRLQDGAIITQFDYPTCEHLGLLKMDFLGLKNL 591

Query: 580  TLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  +LD +        DL  +P DD  TY LL++  TLG+FQL+  GMR  L+ ++P 
Sbjct: 592  TIISDALDNIKLNGKTPPDLEHLPIDDRATYELLSSGETLGVFQLDGGGMRTLLKQLRPT 651

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK--IVSIHPLIDPMLK----ETQGVIIYQ 692
              +DI ALV+LYRPGP+      N          I  IHP +   LK     T G+IIYQ
Sbjct: 652  EFDDISALVALYRPGPMGADSHTNYALRKNGAMGIKPIHPELADPLKDILGYTYGLIIYQ 711

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ  +F  G   NG S+     ++++
Sbjct: 712  EQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMLGNGYSEDCCKTLWDI 771

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T +  + +K+  +  + R+ 
Sbjct: 772  LVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQ-TDKDKLGMYLNEVRRM 830

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSR 871
             I+++PP VN     F      I + LA+I+ VG      I++       + S +DF ++
Sbjct: 831  GIRVLPPDVNASVATFAPDGADIRFGLASIRNVGEGVVEGIIKSRRDKGAYTSFQDFLNK 890

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V ++  N+R +ESL+ AGA D FG +R  L+   +        +++  +    ++FA   
Sbjct: 891  VPAEVCNKRAIESLIKAGAFDAFGVARRALVAVHEEAVDSVISLKRQESKGQFDLFASLD 950

Query: 932  GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            G   D      + +          +   E+++LG Y S HPL   + +LR++      E 
Sbjct: 951  GGGDDLLEGFSVEIPALKEWPKKDKLAFERQMLGLYVSDHPLSGMENVLRRLAADQIIEL 1010

Query: 987  VA---TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
             +         +R+A ++ S + K +++ G         + +      FFP
Sbjct: 1011 TSEDGKPNDAEVRIAGLITSVEHKTSKRTGQPWAIARLEDMSGAINVLFFP 1061


>gi|222111091|ref|YP_002553355.1| DNA polymerase iii subunit alpha [Acidovorax ebreus TPSY]
 gi|221730535|gb|ACM33355.1| DNA polymerase III, alpha subunit [Acidovorax ebreus TPSY]
          Length = 1179

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1057 (38%), Positives = 596/1057 (56%), Gaps = 59/1057 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   ++ ++   A D QPA+AITD NNLF A++F ++    G++PI
Sbjct: 2    FVHLRLHTEFSVVDGTTRIDEVVKAAAKDGQPALAITDLNNLFGAIKFYKEGRGKGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++ +                  +VLLV    GY  L EL++R +  +  +    
Sbjct: 62   LGAEIYLEGE-----------AAGAPSRMVLLVQNRTGYLNLSELLARAWTRNIVRNQAL 110

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
                WLQE+G +GLI L G  +GP+ +A        A +  L    +F  R Y+ +QR  
Sbjct: 111  CTWEWLQELG-DGLIALAGAQAGPVGQALMKGDDAGAAQLALRLAGIFPHRFYLEVQRAG 169

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
            R  D    +  VQLA    LP+VAT+   F + +DYEAH+  + +A   +++   R  R 
Sbjct: 170  RPDDEAHVTAAVQLAARLALPVVATHPVQFATPDDYEAHEARVCIAEGEILANPRRVRRF 229

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + Y K+ +EM ++F+D+P AL NTVE+A+RC+  L +  P LP F            E
Sbjct: 230  TREQYFKSSAEMEALFADVPSALANTVEVAKRCNVSLVLGKPQLPNFPIPGGM----TME 285

Query: 309  NELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R+ +  GLE     L      +      Y++RL+FEL  I +M F GYFLIV DFIQ
Sbjct: 286  QYFRHASHEGLEERLLHLYPDTAERDRQRPRYQERLEFELGTILKMGFPGYFLIVGDFIQ 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAKKN  PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ 
Sbjct: 346  WAKKNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQA 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV++KYG E V+QI TFG++ AKAA+RDVGR + M Y+  D + KL+P  P  
Sbjct: 406  NRDRVIDYVKDKYGKEAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGQ 465

Query: 486  PVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
              +                A+  +    E    +  V  ++E++QKLEG+ R+   HA G
Sbjct: 466  TYTLAYPPEPKKEGDKNNYALELEPILYERVRKEEDVRTIIEMAQKLEGMTRNIGMHAGG 525

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            ++I    L+   P+Y+   S+  V+Q++   +E  GL+KFDFLGL TLT+L+ + +F+ Q
Sbjct: 526  VLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMQ 585

Query: 592  RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R           IP DD  TY L +   T  +FQ ES GM+  L+  +P  +ED+IAL +
Sbjct: 586  RHKGQENFAFENIPLDDAATYKLFSDGKTEAVFQFESRGMQGMLKEARPSRLEDLIALNA 645

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  + NRK+GKE +   HPL++P+L ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 646  LYRPGPMDLIPSFVNRKHGKEVVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM + +  F  GA++ GIS+  A  +F+L+ KFA YGFNKSHAAA
Sbjct: 706  GADMLRRAMGKKKAEEMAEHRAIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHAAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTPCVD 827
            Y++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA +   +   PP +N     
Sbjct: 766  YSLLAYHTGWLKVHYTAEFYCANMTVEMDDTDKLKVLYEDAVKHFGMTFEPPDINRGNYR 825

Query: 828  FK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKK 876
            F+ V D  I Y L A+KG G      I+ A              PF SL DFC RVD  +
Sbjct: 826  FEPVTDKVIRYGLGAVKGTGQQAIEAIIAAREGQGVGPQGATRGPFKSLFDFCVRVDRTR 885

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKG 932
            +N+R +E+L+ AGA D    +R  L+ SLD   ++A     N       +F        G
Sbjct: 886  VNKRTVEALIKAGAFDALQLNRAALVASLDRAFEFANAQIAN--ANQGGLFDMMGDDAIG 943

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
            + + +  L          R   E+  +GFY SGH  D     +R+      +E V +   
Sbjct: 944  SSTQEPDLVDVMPWGIKERLMQEKTAVGFYLSGHLFDEVHQEVRRFVRTAIDELVDSRET 1003

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                +A +V   +    ++G R+      + +   EA
Sbjct: 1004 Q--VVAGIVSDYRVINGQRG-RLALFKLDDKSGVIEA 1037


>gi|221133300|ref|ZP_03559605.1| DNA polymerase III subunit alpha [Glaciecola sp. HTCC2999]
          Length = 1138

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/1027 (39%), Positives = 585/1027 (56%), Gaps = 32/1027 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G   +  +LD+      PA+A+TD  N+   ++F  +A   GI+PIIG    +    
Sbjct: 1    MMDGLNKVKPLLDECVNLSMPALALTDQMNMCGLVKFYSEAHNRGIKPIIGTDFWV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q  T  P +  + LL +   GY  +  L+S+ Y          I  +WL E   
Sbjct: 57   ------QDLTQSPNIFRLTLLATNNIGYNNITVLISKAYQRGHVNNRPVIDKAWLAE-HK 109

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG-YDRYRESQV 200
             G+I+L+G + G +  A   N+ + A + +  ++  F DR YV L R     +       
Sbjct: 110  AGIIILSGATRGDLGEALLKNNQKAAHQIVEFYQTHFPDRYYVELIRTGRVNENEYIRAA 169

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSE 259
            V  A  + LP+VATN   F++ E++ AH++ +++     +    RP+  +P  Y+++  E
Sbjct: 170  VAFAEQYALPVVATNEVCFIASENFAAHEIRVSIHDGYTLEDSRRPKHYSPQQYMRSAEE 229

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            MV +F D+PEA+ NTVEIA+RC+  +Q+                    E+ L   +  GL
Sbjct: 230  MVELFDDIPEAITNTVEIAKRCNVTVQLGTYF-----LPNFPTGDLSTEDFLVKVSKEGL 284

Query: 320  EVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL +    +    +   +Y +RLD EL VI +M F GYFLIV +FIQW+K N IPVGP
Sbjct: 285  ERRLLKLFPDETDRVEKRGEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 344

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFDIDFC DRRDEVI +V  
Sbjct: 345  GRGSGAGSLVAYALDITDLDPLEFDLLFERFLNPERVSMPDFDIDFCMDRRDEVIDHVAQ 404

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP+DP   +  +A   + 
Sbjct: 405  MYGREAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPSDPGMTL-AKAFDVEP 463

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            R  E   AD  V  LL +++ LEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464  RLGELENADDDVKELLTMARILEGVTRNAGKHAGGVVIAPTQITDFSPLYCDDEGRNPVT 523

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTK 615
            QF+   +E AGL+KFDFLGL+TLT++Q ++D + +  G +VD++ IP +D  ++ LL   
Sbjct: 524  QFDKNDVETAGLVKFDFLGLRTLTIIQWAIDMIKEMTGEEVDITQIPLEDPASFKLLQRA 583

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YNNRKNGK 668
             +  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+ + +V       +       
Sbjct: 584  ESTAVFQLESRGMKDLINRLRPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREAISY 643

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
                  H  +  +L+ T G+I+YQEQVMQIAQ ++GYSL  AD+LRRAMGKK  EEM+KQ
Sbjct: 644  PDANYQHECLQVILEPTYGIILYQEQVMQIAQEMAGYSLGGADLLRRAMGKKKPEEMEKQ 703

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  F  G+  N I   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTHYP  F+
Sbjct: 704  RSVFAEGSKNNNIDPDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPAYFM 763

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGT 847
            AA M+ +MDN +KI     + ++  I I PP +N+    F V +N  I Y + AIKGVG 
Sbjct: 764  AAVMSADMDNTDKIVTLADECQRMGITICPPDLNSGKYKFTVNENQEIVYGIGAIKGVGE 823

Query: 848  TTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 I++A      F  L DFC+++D KK+N+RVLE LV AGA+D  G  R  ++ SL 
Sbjct: 824  GPIEAIIQARNEHGVFSDLFDFCAKIDIKKVNKRVLEKLVLAGAMDNLGPHRAAIMASLQ 883

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
            +  + A    K  +    ++F         +       V +  V  + E+  LG Y +GH
Sbjct: 884  DALEAASQHAKAESFGQGDMFGLLTDADDAEQAFANVPVWSEKVWLDGEKETLGLYLTGH 943

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P++ Y   L         +   T + N + +A +V+  +    +KG R   VT  + +  
Sbjct: 944  PINRYLSELTHYTDSRINDLKPTGKENQVAIAGLVLGVRVMTNKKGRRWAIVTLDDKSGR 1003

Query: 1027 YEANFFP 1033
             +   FP
Sbjct: 1004 IDVRLFP 1010


>gi|300312866|ref|YP_003776958.1| DNA polymerase III subunit alpha [Herbaspirillum seropedicae SmR1]
 gi|300075651|gb|ADJ65050.1| DNA polymerase III (alpha chain) protein [Herbaspirillum seropedicae
            SmR1]
          Length = 1152

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1048 (38%), Positives = 601/1048 (57%), Gaps = 41/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P FVHL++HS YS+++G + +++I+   A D Q A+A+TD  NLF  + F ++A  
Sbjct: 1    MT-TPQFVHLRMHSEYSIVDGLVRIDDIVKAAAKDGQAALAVTDLANLFCMVRFYKEARG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PI GC L I    + +              +++L+    GY +L E++S+ +L +Q
Sbjct: 60   KGVKPIAGCDLWITNDADREKP----------FRLLVLIKNRHGYLQLCEVLSQAWLNNQ 109

Query: 125  GKQSVRICLSWLQEIGTE----GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
             K    + + WL  +  +    GLI L+G + G I +A    +   AE     + ++F  
Sbjct: 110  YKGRAEVRMEWLDALRHQEGGNGLIALSGAAMGDIGQAIDNGNLAQAEACARRWAEIFPG 169

Query: 181  RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQR    +   +  Q V L     LP VAT+   F S E++ AH+    +A   +
Sbjct: 170  AFYLELQRAGQANMEVQVRQSVALGAKLGLPCVATHPIQFQSPEEFIAHEARTCIAEGEI 229

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R  R     Y K+++EMV +F+DLP A+ NTVEIA+RC+ +LQ+  P LP F   
Sbjct: 230  MANARRVRRFNEQQYFKSQAEMVELFADLPGAVANTVEIAKRCNLVLQLGKPQLPDFPTP 289

Query: 299  ECDDIQKEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +   I    ++ L  +  AGLE     L      +      Y  RL+FE N I +MKF G
Sbjct: 290  DGMTI----DDFLVAQTKAGLEVRLKELFPNEAEREKQRPRYEARLEFENNTIIKMKFPG 345

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFIQWAK N +PVGPGRGSGAGS+ AY L ITD+DPLR++LLFERFLNP+R+SM
Sbjct: 346  YFLIVADFIQWAKNNGVPVGPGRGSGAGSLVAYCLLITDLDPLRYNLLFERFLNPERVSM 405

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQ+ RD VI+YV+++YG E V+QI TFG++ AK A+RDVGR L + Y+  D +
Sbjct: 406  PDFDIDFCQEGRDRVIQYVKDRYGKEAVSQIATFGTMAAKGAVRDVGRVLDLGYNFCDGI 465

Query: 476  CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP  P   V+   AI ++   +E    +  V +L+ ++Q++EG+ R+   HA G++I
Sbjct: 466  SKLIPFKPGKLVTLADAIEEEPLLKERLENEEEVKQLMGLAQQVEGIARNIGMHAGGVLI 525

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-- 592
                L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L +++ ++     
Sbjct: 526  APGKLTDFCPLYTQGGDSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIRMLDP 585

Query: 593  -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                 DL+ +P DD  +Y LLT   T+ +FQLES GM+  L+  +PD  EDIIALV+LYR
Sbjct: 586  AMADFDLAKLPLDDRPSYELLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYR 645

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+D I  +  RK+G E      P  + +L ET G+++YQEQVMQ+AQ++ GYSL  AD
Sbjct: 646  PGPMDLIPDFCKRKHG-EAFDYPDPRTEGILSETYGIMVYQEQVMQMAQVIGGYSLGGAD 704

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM K +E F  GA+KNG+ +  A  IF+L+ KFA YGFNKSHAAAYA+
Sbjct: 705  LLRRAMGKKKAEEMAKHRELFREGAAKNGLDQAKADEIFDLMEKFAGYGFNKSHAAAYAL 764

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI-QIMPPSVNTPCVDFKV 830
            +SY TA++K H+P  F+AA+++L M++ +K+K   +DA       I+PP +N     F  
Sbjct: 765  LSYYTAYLKAHHPAAFMAANLSLAMEDTDKVKILIEDAIDICKLAILPPDINKSDYRFMP 824

Query: 831  GDN------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
                     +I Y L A+KG G      I+EA    PF  L DF  RVD K++NRR ++S
Sbjct: 825  VGEPGKKATQIRYGLGAVKGAGQNAIEAILEARKSGPFKDLFDFAKRVDKKQINRRTIDS 884

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+ AGA DCF   R  L  S++   + A+  +  ++    ++F  +       +   +  
Sbjct: 885  LIRAGAFDCFKVDRAVLQASVNLAWESAE--QAEKSANQVSLFGGDDSDLEAPLEYVQVP 942

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +   R   E+  LGFY SGH    Y+  +R+           +       LA ++   
Sbjct: 943  PWSDKQRLTEEKGALGFYLSGHLFSAYEKEVRRFVRTKIASLEPSWEPR--SLAGIITGV 1000

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + + T++G  +   T  +     EA  +
Sbjct: 1001 RVQMTQRGKLV-ICTLDDGTGVIEATIY 1027


>gi|332044617|gb|EGI80811.1| DNA polymerase III, alpha subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 1453

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/1077 (32%), Positives = 543/1077 (50%), Gaps = 68/1077 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66
             FVHL  HS +S+L+  +S+ +I+   A    PA+A+TD  N+  A  F           
Sbjct: 260  DFVHLHNHSQFSVLQSTMSVADIVAVAAEHNMPAVALTDHANMMGAFHFVNAVNKHNKAV 319

Query: 67   ---------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
                     I+PI+GC+  +         +  K+       IVL+     GY  L +L S
Sbjct: 320  EGKTTDAKKIKPIVGCEFFVC------ENHLDKSRKDNGYQIVLIAKNKNGYHNLAKLSS 373

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
              +  D      RI    +++   E LI LTG   G +           AE+ L+ +K+ 
Sbjct: 374  HAFT-DGFYYVPRIDKKLIEQY-KEDLICLTGNLYGEVPSKVLNVGENQAEEALIWWKET 431

Query: 178  FGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            F D LYV L RH   D  R    ++ LA  H++ LVATNN+ +  +ED  AHD+L+ V  
Sbjct: 432  FQDDLYVELMRHNQEDENRVNPTLISLAKKHDVKLVATNNTYYAKQEDANAHDILLCVKD 491

Query: 237  STVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI----- 284
                +                ++Y K+   M +IF D+P+A+ N  E+  +         
Sbjct: 492  GEKQATPIGRGRGYRYGLPNQEYYFKSAEAMKNIFKDVPDAIINIQEVVDKIEGFQLARD 551

Query: 285  ---LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
                    P   +  E   D  ++ E   LR+    G + R  +        +++  +RL
Sbjct: 552  VLLPAFDIPEEFQHKEDLEDGGKRGENAFLRHLTYEGAKKRYGE------ELSEEVVERL 605

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            DFEL+VI +  + GYFLIV DFI+ A+  ++ VGPGRGS AGSV AY L IT+IDP++++
Sbjct: 606  DFELSVIEKTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSVVAYCLWITNIDPMKYN 665

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNPDR+SMPD DIDF  + R  V+ YV  KYG  +VAQIIT+G++ AK+++RD 
Sbjct: 666  LLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIEKYGSNQVAQIITYGTMAAKSSIRDT 725

Query: 462  GRALQMPYSQVDRLCKLIP-------------NDPAHPVSLQAIADDSRFREARLADPSV 508
             R L +P    DR+ KLIP              +       + +   +        +   
Sbjct: 726  ARVLDLPLFDADRIAKLIPTMSKLGKIFGLSEKELGSKFRAEDLEKINELLNISEGEDLQ 785

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
               + I++ LEG  R+   HA G++I    +++ VP+     SDL VTQF+   +E AGL
Sbjct: 786  AETVNIARSLEGSVRNTGIHACGVIITPDDITKFVPVSVAKDSDLYVTQFDNSVVEDAGL 845

Query: 569  IKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            +K DFLGLKTLTL++ ++  +  + G+ +D    P DD ETY L     T+G+FQ ES G
Sbjct: 846  LKMDFLGLKTLTLIKDTVKIVKAKHGITLDPENFPLDDEETYALFQRGETVGVFQYESPG 905

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            M++ L+ ++P   +D+IA+ +LYRPGP++ I  +  RK+G E I    P ++  LKET G
Sbjct: 906  MQKHLKDLKPTVFDDLIAMNALYRPGPMEYIPSFVRRKHGDEDIEYDLPAMEEYLKETYG 965

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            + +YQEQVM ++Q L+ ++  EADVLR+AMGKK    +DK K +FI  AS  G       
Sbjct: 966  ITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFIEQASAKGHDAKKLE 1025

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA ++  M++++++  F +
Sbjct: 1026 KIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNMNDIKQVTFFME 1085

Query: 808  DARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865
            + ++  + ++ P VN     F V  DN + + + AIKGVG      I++    D P+ S+
Sbjct: 1086 ECKRMKLPVLGPDVNESYYKFSVNKDNAVRFGMGAIKGVGHGAVMTIVDNRKKDGPYKSI 1145

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQWVEK 917
             D   R+D +  N++  E+L  AG  DCF    R Q           L+   KY    ++
Sbjct: 1146 FDIAKRIDLRAANKKAFENLALAGGFDCFTDTHRAQYFHKEGSDLTFLEKAIKYGAKHQE 1205

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
            N  +   ++F         +  +       +  +   E+ V+G Y SGHPLD ++  ++ 
Sbjct: 1206 NENSAQVSLFGGGSDVQIAEPEVPPCETWGTMEKLAQEREVVGVYISGHPLDDFRTEMKN 1265

Query: 978  MGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                              +I    +V   Q + +++G      T  +    +E   F
Sbjct: 1266 FCTGTIAYFNDLHEHVNKDITFGGVVTDVQHRVSKQGKGWALFTIEDYTDSFEFRIF 1322


>gi|110804236|ref|YP_687756.1| DNA polymerase III subunit alpha [Shigella flexneri 5 str. 8401]
 gi|110613784|gb|ABF02451.1| DNA polymerase III, alpha subunit [Shigella flexneri 5 str. 8401]
          Length = 1127

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1015 (40%), Positives = 597/1015 (58%), Gaps = 38/1015 (3%)

Query: 39   DQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS 98
               PA+AITD  NL   ++F      AGI+PI+G   ++          Q       +  
Sbjct: 1    MGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV----------QCDLLGDELTH 50

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            + +L +   GYQ L  L+S+ Y    G     I   WL E+  EGLI+L+GG  G + R+
Sbjct: 51   LTVLAANNTGYQNLALLISKAYQRGYGAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRS 109

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNS 217
                +S + ++ +  +++ F DR ++ L R    D        V+LA    LP+VATN+ 
Sbjct: 110  LLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDV 169

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVE 276
             F+   D++AH++ +A+     +    RPR  +P  Y+++  EM  +F+D+PEAL NTVE
Sbjct: 170  RFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVE 229

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYH 333
            IA+RC+  +++           +        E+ L  +A  GLE RLA        +   
Sbjct: 230  IAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKR 284

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
              +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL IT
Sbjct: 285  RPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKIT 344

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            D+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ 
Sbjct: 345  DLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMA 404

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
            AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + +  E   AD  V  L++
Sbjct: 405  AKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALID 463

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
            +++KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDF
Sbjct: 464  MARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDF 523

Query: 574  LGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            LGL+TLT++  +L+ + +R  K      D++ IP DD +++ +L    T  +FQLES GM
Sbjct: 524  LGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGM 583

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVS-----IHPLIDPM 681
            +  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E+I        H  +  +
Sbjct: 584  KDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKSV 643

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EEM KQ+  F  GA KNGI
Sbjct: 644  LEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGI 703

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
            +  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+AA MT +MDN EK
Sbjct: 704  NAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEK 763

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-AD 859
            +     +  +  ++I+PP +N+    F V  D  I Y + AIKGVG      I+EA    
Sbjct: 764  VVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKG 823

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
              F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K A    K  
Sbjct: 824  GYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAE 883

Query: 920  TNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
                 ++F    +     + +          V  + E+  LG Y +GHP++ Y   + + 
Sbjct: 884  AIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERY 943

Query: 979  -GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 944  VGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 998


>gi|254190629|ref|ZP_04897136.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pasteur
            52237]
 gi|157938304|gb|EDO93974.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pasteur
            52237]
          Length = 1174

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1044 (38%), Positives = 604/1044 (57%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+
Sbjct: 110  YRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGGEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T + + + + +M ++F+DLP A  NTVEIA+RC+  L++  P LPRF   +   
Sbjct: 230  RRQKRFTTEQFFRTQGDMAALFADLPSARANTVEIAKRCNLTLELGKPKLPRFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GL+ RL Q    +         Y QRLDFE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++   +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ A
Sbjct: 826  GKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R QLL S+    + A+    N       +F    G  + +  L      + 
Sbjct: 886  GAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + + 
Sbjct: 943  KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022


>gi|167918166|ref|ZP_02505257.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei BCC215]
          Length = 1111

 Score =  738 bits (1905), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+
Sbjct: 110  YRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   
Sbjct: 230  RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GL+ RL Q    +         Y QRLDFE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++   +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ A
Sbjct: 826  GKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R QLL S+    + A+    N       +F    G  + +  L      + 
Sbjct: 886  GAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + + 
Sbjct: 943  KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022


>gi|42523550|ref|NP_968930.1| hypothetical protein Bd2078 [Bdellovibrio bacteriovorus HD100]
 gi|39575756|emb|CAE79923.1| dnaE [Bdellovibrio bacteriovorus HD100]
          Length = 1179

 Score =  738 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1059 (38%), Positives = 603/1059 (56%), Gaps = 40/1059 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLLE A  +  I  K AA Q PA+A+TD  N+F A+EF        ++P
Sbjct: 2    SFVHLHVHSEYSLLEAACRVKAIAKKAAAMQMPAVALTDNGNMFGAVEFFFACKDNNVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G    I     L+              +V L    +GY+ L +L S  Y  +      
Sbjct: 62   ILGLDAYIAPGSRLEKKQDRDQVNTGPRRLVFLAQNNDGYRNLCKLSSIGYQ-EGFYWKP 120

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    +Q+   E LI LTGG  G +  +F       A  ++   K++F DRLY+ + R 
Sbjct: 121  RIDYEVIQQY-NENLICLTGGLRGEVAESFLREGPDAALAKIRQLKEIFNDRLYLEMCRT 179

Query: 190  RGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
               +       +++ +    +P+VA+N+  +++++D  A +VL+ +  +  +S + R R 
Sbjct: 180  GVAEWDRLNPFLLEASKITGVPVVASNDVHYMTQDDQMAQEVLICIGSNKTLSDESRFRL 239

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI--EKECDDIQK 305
             T + YLK   +M  +F+D+PEA+ NT++IA RC    ++                D   
Sbjct: 240  GTDEFYLKKPEQMTELFADVPEAIANTLQIAERCDVKFKLKDDQGKPIYHLPTFPTDDGL 299

Query: 306  EEENELRNKAVAG----LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              + ++  KA AG     E   A+G +       +Y +RL++EL +I RM F+GYFLIV 
Sbjct: 300  SLKEDIARKAKAGLLVRFEEAAARGEMIPEDKIPEYDKRLEYELGIIDRMGFNGYFLIVQ 359

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N+IPVGPGRGSGAGS+ AY L ITD+DPL   LLFERFLNP+R+SMPDFDID
Sbjct: 360  DFINWAKVNDIPVGPGRGSGAGSLVAYVLRITDLDPLPNFLLFERFLNPERISMPDFDID 419

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQDRR EVI+YV  KYG E V+QIIT+G LQA+AA++DVGR L M + +VD + KLIP 
Sbjct: 420  FCQDRRQEVIQYVTRKYGQESVSQIITYGKLQARAAIKDVGRVLGMTFPEVDAVTKLIPE 479

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +  +A+  + R  E    +P+V+ L++++Q++EG+ RHA  HAAG++I D  L +
Sbjct: 480  KLGINLK-EAMEMEPRIGEMMEMNPTVNTLMDLAQRVEGMVRHAGIHAAGVIIADGQLVR 538

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSL 600
              P+Y+       V Q++MK  EK GLIKFDFLGLKTLT +  +L  +   RG K+   +
Sbjct: 539  HAPLYKGA-DGEQVVQYDMKHAEKIGLIKFDFLGLKTLTHINHALKLILKNRGKKIQSQM 597

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP  D  T+ +++   T G+FQ E  G+  A   ++P    D+ A+ SLYRPGP+ NI  
Sbjct: 598  IPMTDAATFEMMSRGDTAGVFQFEGEGITDATRKIRPSSFADVTAITSLYRPGPMANIPD 657

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            + +RK+GK  +  +      +L ET G+++YQEQVM IA  ++GYSL EAD+LRRAMGKK
Sbjct: 658  FTDRKHGKAPVEYLLEDTREVLSETYGIMVYQEQVMGIASRIAGYSLGEADMLRRAMGKK 717

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            IKEEMD+ +ERF+ GA + G  K  + ++F+L+ KFADYGFNKSHAAAY+V++ QTAW+K
Sbjct: 718  IKEEMDQHRERFMKGAIERGHDKQRSSDLFDLMYKFADYGFNKSHAAAYSVVTIQTAWLK 777

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYP EF AA ++ E+ + EKI K+ +DA +  + +  PSVN     F V  + IY+ L 
Sbjct: 778  CHYPAEFFAALLSTELSDTEKIVKYSKDATKRGLTVRSPSVNFSDYLFDVHGDEIYFGLG 837

Query: 841  AIKGVGTTTARHIMEASAD---KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            AIKGVG      I+EA  +   K F+SL++F + +D++++N++V+E L+ AGA D FG  
Sbjct: 838  AIKGVGQNAVEAIIEARNNLPEKKFNSLDEFFNSIDTRRVNKKVIECLIKAGAFDGFGAH 897

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R QL+         A  ++K+R     ++F     +   K+TLE+      +     E+ 
Sbjct: 898  RAQLVAGYQKYLDRAIGLQKDREMGQSSLF-DLGPSTETKVTLEEVKPWARTASLTYEKE 956

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR-----------------------GNN 994
            VLGFY S HPL  +  +          +  A +                           
Sbjct: 957  VLGFYLSDHPLKGFDTLSELWTTCKVIDLPAQMPAPGSPEAEALKAAKKDWKNRDAGKKR 1016

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +A ++   ++  T+KG+R+ +    +     E   FP
Sbjct: 1017 VVVAGLITELRELITKKGTRMAFGKVEDLTGSCELVIFP 1055


>gi|33240201|ref|NP_875143.1| DNA polymerase III subunit alpha [Prochlorococcus marinus subsp.
            marinus str. CCMP1375]
 gi|33237728|gb|AAP99795.1| DNA polymerase III alpha subunit [Prochlorococcus marinus subsp.
            marinus str. CCMP1375]
          Length = 1168

 Score =  738 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1045 (36%), Positives = 588/1045 (56%), Gaps = 30/1045 (2%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L  HS YSLL+GA  L  ++ +      PA+A+TD   ++ A+E  +     GI+PI
Sbjct: 3    FVPLHNHSDYSLLDGASQLPLMVARAKELGFPALALTDHGVMYGAIELLKLCKKEGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ--- 127
            IG ++ +          +          +V+L   + GY+ L++L +  +L     +   
Sbjct: 63   IGNEMYVINGSISDPQPK----KEKRYHLVILAKNSTGYKNLVKLTTISHLKGMRGRGIF 118

Query: 128  -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I    L++  +EGLI+ T    G I +A       VA++    +K +FG+  Y+ +
Sbjct: 119  SRACIDKDLLKKY-SEGLIISTACLGGEIPQAILRGRLDVAKEVANWYKNVFGEDFYLEI 177

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q H    DR     + ++A    + LVATN++ +L+E D EAHD L+ V    +V  + R
Sbjct: 178  QDHGSIEDRIVNVAISKIANELNIELVATNDAHYLTENDVEAHDALLCVLTGKLVKDEKR 237

Query: 246  PRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R T   YLK+ S+M ++F D    E +   ++     +  ++ ++ +    + K     
Sbjct: 238  LRYTGTEYLKSESQMKNLFVDHLDEEVVTKAIKNTLMVASKVEEYSILGNYKMPKFPVPE 297

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                   L + +V GL  +L   +I       +Y +RL  E+ +I  M F  YFL+V D+
Sbjct: 298  GNTPIEYLESVSVNGLLEKLKLDSID--LIDNEYSERLSTEIKIIEEMGFPTYFLVVWDY 355

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++A++ +IPVGPGRGS AGS+ AY+L IT+IDP++  LLFERFLNP+R SMPD D DFC
Sbjct: 356  IKFAREQSIPVGPGRGSAAGSLVAYSLGITNIDPVKNGLLFERFLNPERKSMPDIDTDFC 415

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EVI YV   YG ++VAQIITF  + +KA L+DV R L +PY + D+L KLIP   
Sbjct: 416  IERRNEVIDYVTRMYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYREADQLAKLIPVVR 475

Query: 484  AHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
              P  L A+    +  S FR+    DP V + ++++ ++EG  +    HAAG+VI   PL
Sbjct: 476  GKPAKLDAMISKNSPSSEFRDKYEKDPLVKKWIDMAIRIEGTNKTFGVHAAGVVIASDPL 535

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
             +LVP+ ++      +TQ+ M+ IE  GL+K DFLGLK LT+L+++++ + +    +VDL
Sbjct: 536  DELVPLQKN-NDGQVITQYFMEDIESLGLLKMDFLGLKNLTMLERTVNLVEKSIGERVDL 594

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN- 657
              +  +D +TY LL+     GIFQLESSGMRQ +  +QP  +EDI ++++LYRPGP+D  
Sbjct: 595  DELSLEDKKTYELLSRGDLEGIFQLESSGMRQIVRDLQPSSLEDISSILALYRPGPLDAG 654

Query: 658  -IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             I  + NRK+G+E I   H  + P+L ET G++IYQEQ+M+IAQ L+GYSL +AD+LRRA
Sbjct: 655  LIPKFINRKHGREAIDFPHASLAPILGETYGIMIYQEQIMKIAQDLAGYSLGQADLLRRA 714

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK   EM K +  FI GA K G+   IA  +F+ +  FA+Y FNKSH+ AY  ++YQT
Sbjct: 715  MGKKKVSEMQKHRGFFIDGAKKKGVDSKIASELFDQMVLFAEYCFNKSHSTAYGAVTYQT 774

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K HYPV ++AA +T+   + +KI+++  +     I++MPP +N+  +DF   +NRI 
Sbjct: 775  AYLKAHYPVAYMAALLTVNSSSTDKIQRYISNCNSMGIEVMPPDINSSGIDFTPLENRIL 834

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            + L+A++ +G    R +++A   D  F SL D C R+ S  LNRR LESL+  GALD F 
Sbjct: 835  FGLSAVRNLGDGVIRQLIKARVNDGLFLSLADLCDRIPSNILNRRSLESLIHCGALDAFH 894

Query: 896  Y--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----HEKGTFSDKITLEKFSVENS 948
               +R QL++ LD I  +A    ++R +   N+F       EK   S           + 
Sbjct: 895  PESNRAQLVKDLDLIIDWAGARARDRASGQGNLFDLSSEKEEKSDISSAPQGPIVKDYHP 954

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
            + + + E+ +LGFY S HPL       + +              + + + AM+   +   
Sbjct: 955  TEKLKLEKELLGFYLSDHPLKQLSEPAKLIAPISLINLDDQRDKSKVSVIAMIKEMRIVN 1014

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            TRKG ++  +   +     EA  FP
Sbjct: 1015 TRKGDKMSILQIEDLTGSCEAVVFP 1039


>gi|121594197|ref|YP_986093.1| DNA polymerase III subunit alpha [Acidovorax sp. JS42]
 gi|120606277|gb|ABM42017.1| DNA polymerase III, alpha subunit [Acidovorax sp. JS42]
          Length = 1187

 Score =  738 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1057 (38%), Positives = 596/1057 (56%), Gaps = 59/1057 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   ++ ++   A D QPA+AITD NNLF A++F ++    G++PI
Sbjct: 10   FVHLRLHTEFSVVDGTTRIDEVVKAAAKDGQPALAITDLNNLFGAIKFYKEGRGKGVKPI 69

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++ +                  +VLLV    GY  L EL++R +  +  +    
Sbjct: 70   LGAEIYLEAE-----------AAGAPSRMVLLVQNRTGYLNLSELLARAWTRNIVRNQAL 118

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
                WLQE+G +GLI L G  +GP+ +A        A +  L    +F  R Y+ +QR  
Sbjct: 119  CTWEWLQELG-DGLIALAGAQAGPVGQALMKGDDAGAAQLALRLAGIFPHRFYLEVQRAG 177

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
            R  D    +  VQLA    LP+VAT+   F + +DYEAH+  + +A   +++   R  R 
Sbjct: 178  RPDDEAHVTAAVQLAARLALPVVATHPVQFATPDDYEAHEARVCIAEGEILANPRRVRRF 237

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + Y K+ +EM ++F+D+P AL NTVE+A+RC+  L +  P LP F            E
Sbjct: 238  TREQYFKSSAEMEALFADVPSALANTVEVAKRCNVSLVLGKPQLPNFPIPGGM----TME 293

Query: 309  NELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R+ +  GLE     L      +      Y++RL+FEL  I +M F GYFLIV DFIQ
Sbjct: 294  QYFRHASHEGLEERLLHLYPDTAERDRQRPRYQERLEFELGTILKMGFPGYFLIVGDFIQ 353

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAKKN  PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ 
Sbjct: 354  WAKKNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQA 413

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV++KYG E V+QI TFG++ AKAA+RDVGR + M Y+  D + KL+P  P  
Sbjct: 414  NRDRVIDYVKDKYGKEAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGQ 473

Query: 486  PVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
              +                A+  +    E    +  V  ++E++QKLEG+ R+   HA G
Sbjct: 474  TYTLAYPPEPKKEGDKNNYALELEPILYERVRKEEDVRTIIEMAQKLEGMTRNIGMHAGG 533

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            ++I    L+   P+Y+   S+  V+Q++   +E  GL+KFDFLGL TLT+L+ + +F+ Q
Sbjct: 534  VLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMQ 593

Query: 592  RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R           IP DD  TY L +   T  +FQ ES GM+  L+  +P  +ED+IAL +
Sbjct: 594  RHKGQENFAFENIPLDDAATYKLFSDGKTEAVFQFESRGMQGMLKEARPSRLEDLIALNA 653

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  + NRK+GKE +   HPL++P+L ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 654  LYRPGPMDLIPSFVNRKHGKEVVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLG 713

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM + +  F  GA++ GIS+  A  +F+L+ KFA YGFNKSHAAA
Sbjct: 714  GADMLRRAMGKKKAEEMAEHRAIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNKSHAAA 773

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTPCVD 827
            Y++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA +   +   PP +N     
Sbjct: 774  YSLLAYHTGWLKVHYTAEFYCANMTVEMDDTDKLKVLYEDAVKHFGMTFEPPDINRGNYR 833

Query: 828  FK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKK 876
            F+ V D  I Y L A+KG G      I+ A              PF SL DFC RVD  +
Sbjct: 834  FEPVTDKVIRYGLGAVKGTGQQAIEAIIAAREGQGVGPQGATRGPFKSLFDFCVRVDRTR 893

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKG 932
            +N+R +E+L+ AGA D    +R  L+ SLD   ++A     N       +F        G
Sbjct: 894  VNKRTVEALIKAGAFDALQLNRAALVASLDRAFEFANAQIAN--ANQGGLFDMMGDDAIG 951

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
            + + +  L          R   E+  +GFY SGH  D     +R+      +E V +   
Sbjct: 952  SSTQEPDLVDVMPWGIKERLMQEKTAVGFYLSGHLFDEVHQEVRRFVRTAIDELVDSRET 1011

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                +A +V   +    ++G R+      + +   EA
Sbjct: 1012 Q--VVAGIVSDYRVINGQRG-RLALFKLDDKSGVIEA 1045


>gi|206582064|pdb|3E0D|A Chain A, Insights Into The Replisome From The Crystral Structure Of
            The Ternary Complex Of The Eubacterial Dna Polymerase Iii
            Alpha-Subunit
 gi|206582065|pdb|3E0D|B Chain B, Insights Into The Replisome From The Crystral Structure Of
            The Ternary Complex Of The Eubacterial Dna Polymerase Iii
            Alpha-Subunit
          Length = 1220

 Score =  738 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/1096 (38%), Positives = 601/1096 (54%), Gaps = 82/1096 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAA----DQQPAIAITDTNNLFSALEFSQ 60
            +     F HL  H+ +SLL GA  L ++L  +      D  PA+A+TD  NLF A+EF +
Sbjct: 1    MGSKLKFAHLHQHTQFSLLNGAAKLQDLLKWVKETTPED--PALAMTDHGNLFGAVEFYK 58

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            KA A G++PIIG +  +  +       +GK        + LL     GYQ L+ L SR Y
Sbjct: 59   KATAMGVKPIIGYEAYVAAESRFDR-KRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAY 117

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            L +   +  RI    L+E   +GLI L+G     I +    +   +AE RL     +FGD
Sbjct: 118  L-EGFYEKPRIDREILRE-HAQGLIALSGCLGAEIPQFILQDRLDLAEARLNEDLSIFGD 175

Query: 181  RLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            R ++ +Q H   ++ + +QV+ + A  + L +VATNN  ++ +ED  AH+VL+A+   T 
Sbjct: 176  RFFIEIQNHGLPEQKKVNQVLKEFARKYGLGMVATNNGHYVRKEDARAHEVLLAIQSKTT 235

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIF----SDLPEALENTVEIARRCSFILQVHAPILPRF 295
            +   +R R   D +     E +           E  +NTVEIAR C   L +   ++ R 
Sbjct: 236  LDDPERWRFPCDEFYVKTPEEMRAMLPEAEWGDEPFDNTVEIARMCDVDLPIGDKMVYRI 295

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA--------------------- 334
              +      + E   LR     GL  R         Y                       
Sbjct: 296  -PRFPLPEGRTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLGTMPPHGDERALAEAL 354

Query: 335  --------------------------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
                                      +    R  +EL+VI RM F GYFLIV D+I WA+
Sbjct: 355  ARVEEKAWEELRKRLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWAR 414

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             + + VGPGRGS AGS+ AYA+ IT+IDPLRF LLFERFLNP+R+SMPD D DF    RD
Sbjct: 415  GHGVSVGPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERD 474

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI+YV+ +YG ++VAQI TFGSL +KAAL+DV R   +P+ + + L KLIP     P  
Sbjct: 475  RVIQYVRERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKP 534

Query: 489  -LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A   +   R     D  + +++E++ +LEGL RHAS HAAG+VI   PL+ LVP+ R
Sbjct: 535  LQEAFEAEPELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMR 594

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
            D +   PVTQ++M  +E  GL+K DFLGL+TLT L ++   + + +GV++D   +P DD 
Sbjct: 595  D-QEGRPVTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKESKGVELDYDRLPLDDP 653

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T+ LL+   T G+FQLES GM   + G++P  +EDIIALVSLYRPGP+++I  Y  R +
Sbjct: 654  KTFELLSRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRHH 713

Query: 667  GKEKIVS---IHPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            G+E +      H    + P+L ET G+ +YQEQ+MQIA  ++GYSL EAD+LRRAMGKK 
Sbjct: 714  GQEPVSYAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKR 773

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             EEM K +ERF+ GA + G+ +  A  +F++L  FA+YGFNKSHAAAY+++SYQTA++K 
Sbjct: 774  VEEMQKHRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKA 833

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEF+AA +++E  + +K+ ++ +DAR   I ++PP VN    DFKV    I + L+A
Sbjct: 834  HYPVEFMAALLSVERHDSDKVAEYIRDARALGIPVLPPDVNRSGFDFKVVGEEILFGLSA 893

Query: 842  IKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +K VG   AR I+E      PF SL DF  R+  + +N+R LESLV AGALD FG  R +
Sbjct: 894  VKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALDAFG-DRAR 952

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            LL SL+ + ++A    +   +    +FA  +     +  L + S  +       E+  LG
Sbjct: 953  LLASLEPLLRWAAETRERGRSGLVGLFAEVE-----EPPLVEASPLDEITMLRYEKEALG 1007

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             Y SGHP+  Y P LR++     EE             + L+ MV    +K TR G  + 
Sbjct: 1008 IYVSGHPVLRY-PGLREVASCTIEELSEFVRELPGKPKVLLSGMVEEVVRKPTRSGGMMA 1066

Query: 1017 WVTFSEPAKEYEANFF 1032
              T S+     E   F
Sbjct: 1067 RFTLSDETGALEVVVF 1082


>gi|254391618|ref|ZP_05006817.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC
            27064]
 gi|294812110|ref|ZP_06770753.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC
            27064]
 gi|197705304|gb|EDY51116.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC
            27064]
 gi|294324709|gb|EFG06352.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC
            27064]
          Length = 1179

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/1068 (31%), Positives = 538/1068 (50%), Gaps = 49/1068 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++           IA+TD  NL  A +F  +A  
Sbjct: 1    MSKPP-FTHLHVHTQYSLLDGAARLKDMFSACKDMGMSHIAMTDHGNLHGAYDFFHQAKG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AGI PIIG +  +  +                    +         +  +   G   L  
Sbjct: 60   AGITPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANRTGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EGLI  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETIAQW-SEGLIASTGCPSGELQTRLRLGQFDEALKAASEY 178

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG  R ++ L  H    +R     ++++    ++P + TN+S +  + +  AHD L+
Sbjct: 179  QDIFGKGRYFLELMDHGIEIERRVRDGLLEIGKKLDIPPLVTNDSHYTFDHEAGAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             +     +S  DR R     Y    ++ +    D  +A +         +  +       
Sbjct: 239  CIQTGKNLSDPDRFRFDGTGYYLKSTDQM-YAIDSSDAWQEGCRNTLLVAEQIDTSGMFE 297

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             + +  + +      E    + +   G+  R   G        +D +++ ++E++VI  M
Sbjct: 298  AKNLMPKFEIPAGFTEVTWFQEEVRTGMARRYPGGV------PEDRQRQAEYEMDVIVSM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAKKN I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIMWAKKNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G+++AK A++D  R L  PY+ 
Sbjct: 412  RISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYPYAM 471

Query: 472  VDRLCKLIPND---PAHPVS------LQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DRL K +P D      P+S          ++    R     +P V ++++ ++ +EGL 
Sbjct: 472  GDRLTKAMPADVLGKGIPLSGILDPAHPRYSEAGEIRGMYENEPDVKKVIDTARGVEGLV 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++   P++   P++      + +TQ++    E  GL+K DFLGL+ LT++
Sbjct: 532  RQMGVHAAGVIMSSEPITDHAPVWVRHSDGVTITQWDYPSCESLGLLKMDFLGLRNLTIM 591

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  +   +G+++++  IP DD  TY LL    TLG+FQ +   MR  L  M+PD  E
Sbjct: 592  DDAVKMVKANKGIELEMLSIPLDDPTTYELLCRGDTLGVFQFDGGPMRSLLRLMKPDNFE 651

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695
            DI A+ +LYRPGP+       Y  RKN +++I  IHP ++  LKE    T G+I+YQEQV
Sbjct: 652  DISAVSALYRPGPMGMNSHTNYALRKNKQQEITPIHPELEEPLKEVLDVTYGLIVYQEQV 711

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+++GYSL EAD+LRR MGKK  EE+ K    F +GA KNG S      ++++L  
Sbjct: 712  QKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFTIFQAGARKNGYSDEAVQALWDVLVP 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H++AY +++Y TA++K ++P E++AA +T   D+ +K   +  + R+  I+
Sbjct: 772  FAGYAFNKAHSSAYGLVTYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNECRRMGIK 831

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            ++PP+VN    +F   GD+ I + L+A++ VGT     I+        + S  DF  +V+
Sbjct: 832  VLPPNVNESQSNFAAQGDDVILFGLSAVRNVGTNVVESIIRCRKSKGKYSSFPDFLDKVE 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
                N+R +ESL+ AGA D  G++R  L+   + +      V++       ++F      
Sbjct: 892  VVVCNKRTVESLIKAGAFDELGHTRKGLVAHHEPMIDNVVAVKRKEAEGQFDLFGGMGDD 951

Query: 934  FSDKI------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
             +D+                 S     E+ +LG Y S HPL   + +L         +  
Sbjct: 952  SADEPGFGLDVEFSDV-EWEKSYLLAQEREMLGLYVSDHPLFGIEHVLSDKSDASISQLT 1010

Query: 988  --ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1011 GGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|194476714|ref|YP_002048893.1| DNA polymerase III subunit alpha [Paulinella chromatophora]
 gi|171191721|gb|ACB42683.1| DNA polymerase III subunit alpha [Paulinella chromatophora]
          Length = 1175

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1053 (34%), Positives = 571/1053 (54%), Gaps = 37/1053 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L  HS YSLL+GA  +  ++        PA+A+TD   ++ ++E  +   AAGI+P
Sbjct: 2    TFVPLHNHSDYSLLDGASQIPQMVKLAKELNMPALALTDHGVMYGSIELLKLCKAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          +          +V+L   A GY+ L+++ S  +L     +  
Sbjct: 62   IIGNEMYVINGSINDPQKK----KERRYHLVVLAKNALGYKNLVKITSISHLRGMRGRGI 117

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    L++  +EGLI+ T    G I ++        A +    ++K+FGD  Y+ 
Sbjct: 118  FARACIDKQLLEQY-SEGLIVSTACLGGEIPQSIINGQLDSAREIARWYQKIFGDDFYLE 176

Query: 186  LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR    ++V++A    + L+ATN++ +L+++D EAHD L+ +    +V+ + 
Sbjct: 177  IQDHGSLEDRTVNVEIVRIAEELGIELIATNDAHYLTKDDVEAHDALLCILTGKLVTDEK 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R R T   Y+K+  EM  +F D    +   N +   ++ +  +  +A +    +      
Sbjct: 237  RLRYTGTEYIKSEEEMGLLFRDHLDRDIACNAILNTKKVADKVGEYALLEDHQMPHFPLP 296

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                    L   +  GL +RL      K      Y +RL++EL VI  M F  YFL+V D
Sbjct: 297  SNHTPITYLTKISQQGLSLRLK--LSNKDKDDSTYHKRLNYELKVINEMGFPTYFLVVWD 354

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I++A++  I VGPGRGS AGS+ AY L IT+IDP+   L+FERFLNP+R SMPD D DF
Sbjct: 355  YIRFAREVGISVGPGRGSAAGSLVAYVLGITNIDPISNGLIFERFLNPERKSMPDIDTDF 414

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C +RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY + DRL KLIP  
Sbjct: 415  CIERRHEVISYVMQRYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGEADRLAKLIPVV 474

Query: 483  PAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
               P  L+ +  D      FRE    +PS+   + +++++EG  +    HAAG+VI   P
Sbjct: 475  RGKPAKLETMIADDSPVPEFREKYKNNPSIMHWVNMARRIEGTNKTFGVHAAGVVIAASP 534

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597
            L +LVP+  +      +TQ+ M+ IE  GL+K DFLGLK LT++ K+++ +    G  ++
Sbjct: 535  LDELVPLQLN-NDGQIITQYFMEDIESMGLLKMDFLGLKNLTMISKTVEIVRAASGEDLN 593

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  +P  D E + +L      GIFQLESSGMRQ +  ++P C+EDI ++++LYRPGP+D 
Sbjct: 594  MDRLPATDTEAFKILEDGDVEGIFQLESSGMRQIVRDLKPSCLEDISSILALYRPGPLDA 653

Query: 658  --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  + NRK+G E I   HP ++P+L ET G+++YQEQ+M+IAQ L+GYSL EAD+LRR
Sbjct: 654  GLIPKFINRKHGAEAINFTHPSLEPILGETYGIMVYQEQIMRIAQDLAGYSLGEADLLRR 713

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK   EM K +  FI GA + G+ + +A  +F+ +  FA+Y FNKSH+AAY  ++YQ
Sbjct: 714  AMGKKKTSEMQKHRNLFIKGAKERGVEEPLAKELFDQMVLFAEYCFNKSHSAAYGAVTYQ 773

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
             A++K HYP+ ++AA +T+     +K++++  +    +I++  P +N    DF     +I
Sbjct: 774  AAYLKAHYPIAYMAALLTVNSGTSDKVQRYIANCNDIDIEVTAPDINYSGYDFTPVKGKI 833

Query: 836  YYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L+A+K +G    R I E+ A    F SL D C RV   ++NRR LESL+  GA+D  
Sbjct: 834  LFGLSAVKNLGNGAIRQISESRAHYGQFLSLADMCDRVPIPQINRRGLESLINCGAMDSL 893

Query: 895  GY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE----------KGTFSDKITLEK 942
                +R QL+ +LD    +A    K+R     N+F             + +         
Sbjct: 894  EPTRNRAQLIANLDLTLDWANSRSKDRAIGQGNLFDLLVISAQGKKSIRASLVTAPKSSP 953

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                  + +   E+ ++GFY S HPL       + +           I  +  +++ +V+
Sbjct: 954  VLDYLPAEKLRLEKELVGFYLSDHPLKQLAQPAKLLPQISLSILQEQIDIDKAKVSLVVI 1013

Query: 1003 --SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 +K TRKG  +  +   +     EA  FP
Sbjct: 1014 LPEIHEKITRKGDLMAVLQLEDLTGCCEAVIFP 1046


>gi|71906199|ref|YP_283786.1| DNA polymerase III, alpha subunit [Dechloromonas aromatica RCB]
 gi|71845820|gb|AAZ45316.1| DNA polymerase III, alpha subunit [Dechloromonas aromatica RCB]
          Length = 1156

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/1049 (38%), Positives = 596/1049 (56%), Gaps = 42/1049 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             SP +VHL++HS YS+ +G + + + + + A D  PA+A+TD  NLF  ++F   A   G
Sbjct: 2    NSPRYVHLRLHSEYSVTDGIVRVGDAVKRAAGDSMPAMAMTDLGNLFGLVKFYTGARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI G  + I   D                 ++LLV    GYQ+L EL+++ YL++  +
Sbjct: 62   VKPIAGADVWITNPD----------APEDAYRLLLLVRNRVGYQQLCELLTKAYLVEGRR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   W  E+G++GLI L+G   G I  A    +  +A +R   ++ +F    Y+ +
Sbjct: 112  DRAEIRREWFAELGSDGLIALSGAHLGDIGEALLNGNFDLAGERAKAWEAIFPGAFYLEV 171

Query: 187  QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR+    +     Q   LA    LPLVAT+   F++ +D+ AH+  + +A   V+    R
Sbjct: 172  QRYGQPQQEAIVQQTADLAGELGLPLVATHPIQFMNRDDFRAHEARVCIAEGYVLGDTRR 231

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+  T + Y K ++EMV +F+DLPEALENT+EIA+RC+  + +    LP F         
Sbjct: 232  PKLYTEEQYFKTQAEMVELFADLPEALENTLEIAKRCNLTMTLGKNFLPDFPIPPGM--- 288

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGY---HAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              +   L  +A  GLEVRLA+             +Y +RL FE   I +M F GYFLIVA
Sbjct: 289  -TDGEYLVQEAKKGLEVRLAELYPDPEVRQQRRPEYDERLVFECKTILQMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI W KKN +PVGPGRGSGAGS+ AY+L ITDIDPL ++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWGKKNGVPVGPGRGSGAGSLVAYSLRITDIDPLEYALLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQD R  VI YV+  YG + V+QI TFG++ +KA +RDVGR   +PYS  DR+ KLIP 
Sbjct: 408  FCQDNRWRVIEYVREHYGADAVSQIATFGTMSSKAVIRDVGRVFGLPYSMCDRISKLIPI 467

Query: 482  DPAHPVS-LQAIADDSRFREARLAD---PSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                PVS  +A+  + + ++    D    ++  L +++ +LE L R+   HA G++I   
Sbjct: 468  VQNKPVSLAEALEQEPQLKQMMEGDGDGETIRELFDLAGRLEDLTRNVGMHAGGVLIAPG 527

Query: 538  PLSQLVPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595
             ++   P+Y+   +D  PV+QF+   +EKAGL+KFDFLGL+ LT+++ +++++ +  G K
Sbjct: 528  KITDFCPIYQATGADASPVSQFDKDDVEKAGLVKFDFLGLRNLTIIELAVEYIRRMTGEK 587

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +DL  + F D   Y +L    T  IFQ+ES GM++ L+ + PD  EDIIA+++LYRPGP+
Sbjct: 588  LDLMSLGFKDPAAYQILKDANTTAIFQVESEGMKKLLKKLAPDRFEDIIAVLALYRPGPL 647

Query: 656  DNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             + +V +     K  +KI   HP +   L  T GVI+YQEQVMQI+Q++ GY+L  AD+L
Sbjct: 648  GSGMVDDFILRKKGQQKIDYFHPDLTACLSPTYGVIVYQEQVMQISQIIGGYTLGGADML 707

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  EEM K +E    GA + G    +A  +F+L+ KFA+YGFNKSH AAYAV++
Sbjct: 708  RRAMGKKKPEEMAKHRETIAQGAKEKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAVVT 767

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD- 832
            Y TAW+K H+   F+AA+M+ ++DN + +K F +D     I+++ P VN     F+  D 
Sbjct: 768  YHTAWLKAHHCAAFMAATMSSDLDNTDSVKIFYEDTIANKIKVLGPDVNVSNYRFEPVDR 827

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I Y L A+KG G      I++A A+  PF  L DFC R D + +NRR  E+L+ AGA 
Sbjct: 828  GTIRYGLGAVKGTGEQAVNVILKARAEGGPFKDLFDFCMRCDKRMVNRRTTEALIKAGAF 887

Query: 892  DCF--------GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            D          G  R +LL ++     +A+  E+N      ++F                
Sbjct: 888  DTIAPEIAPGKGADRCKLLATVGVAMDFAEQAERNAM--QTSLFDMADVADEHAPEYVNV 945

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
               +   +   E+  LGF+FSGHP +  K  L +   +               +A +VV 
Sbjct: 946  RPWDEKTKLMEEKTALGFFFSGHPYNTCKKELSRFIRRPLNRLEPAKE--MTTIAGLVVG 1003

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + + TR+G  + +V   +     E + F
Sbjct: 1004 VRTQMTRRGK-MLFVQLDDGTGMVEVSVF 1031


>gi|257465914|ref|ZP_05630225.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
            25563]
 gi|315917070|ref|ZP_07913310.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
            25563]
 gi|313690945|gb|EFS27780.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
            25563]
          Length = 1144

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1033 (35%), Positives = 589/1033 (57%), Gaps = 31/1033 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +H+ YSLL+G   + + + +  + +  AIAITD  N+F ALEF QKA   G++P
Sbjct: 3    DFVHLHLHTEYSLLDGVGKIEDYMKRAKSLRMKAIAITDHGNMFGALEFYQKAQKYGLKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ +                     ++LL    EGYQ L++L S  YL +      
Sbjct: 63   IIGVEIYLS-------EYPLAEKKGRNFHLILLAENYEGYQNLMKLSSLAYL-EGFYYKP 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ-VAEKRLLTFKKLFG-DRLYVNLQ 187
            R+    L++  ++G+I L+   +G I       + +   E  +L ++ +FG +  Y+ +Q
Sbjct: 115  RLDKELLKKY-SKGIIALSACMNGEIASYILEGAEESKIEATILEYQDIFGKENFYLEVQ 173

Query: 188  RHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   + +     +       ++PLVATN++ ++++ ++   DV++ +   + +S + R 
Sbjct: 174  AHEEIEQQQVNEALYAFGKKMKIPLVATNDTHYVNKGEHILQDVIICIQTGSHLSDEKRM 233

Query: 247  RVTPDHYL--KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R+                +     EAL+N+VEIA+RC   + +H    P +   E     
Sbjct: 234  RIEMQDLYLKSYEEMYAVLGEQYQEALQNSVEIAKRCQLWIPMHEFQFPDYNLPEG---I 290

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               E  L+     GL  R  QG        +   +R+++EL++I +M ++GYF++V DFI
Sbjct: 291  SSLEEYLKKLTYEGLGKRYPQGLD------ERIVERVEYELSIINKMGYAGYFVVVWDFI 344

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+   IP+GPGRGS AGS+ AYAL IT +DPL + L+FERFLNP+R+SMPD DID CQ
Sbjct: 345  SFARSRKIPIGPGRGSAAGSLVAYALEITQLDPLEYRLIFERFLNPERISMPDIDIDICQ 404

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR E+I YV  KYG ++VAQI TFG+L+A+AA+RDVGR + +  S++D+  K IP   +
Sbjct: 405  ERRQEIIDYVVQKYGQDKVAQIATFGTLKARAAIRDVGRVMDVELSKIDKAAKCIPMFAS 464

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 + + ++   +     D  +  ++  + ++E   RH STHAAG++I  + L++ VP
Sbjct: 465  ---LREVLEENIELKTMYQQDVELKNVINTAMRIENKVRHISTHAAGVLITKKSLTESVP 521

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            +Y D ++ +  TQ+ MK +E+ GL+K DFLGL+TLT+LQ++ D++ +    K++LS IP 
Sbjct: 522  LYADSKNGIVSTQYQMKELEELGLLKIDFLGLRTLTILQRTQDYIEENTGKKIELSEIPL 581

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661
             D   Y +L+   + G+FQ+ES G+R  L+ +QP+   DI+AL+SLYRPGP+ + +   +
Sbjct: 582  QDKTVYEMLSKGDSFGVFQMESRGLRSILKRLQPNSFGDIVALLSLYRPGPLGSGMVDDF 641

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             +RK+GK+ I   HP ++ +LKET GVI+YQEQVM+IA +++ YSL EAD+LRRAMGKK 
Sbjct: 642  IDRKHGKKAIEYPHPSLEEVLKETYGVILYQEQVMKIANIMADYSLGEADLLRRAMGKKN 701

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E M + + +FI  + K G S+  A  IF+L+ KFA YGFNKSH+AAYA+I+Y TA+ K 
Sbjct: 702  VEIMHENRSKFIERSIKKGYSREKAEEIFDLIDKFAGYGFNKSHSAAYALIAYWTAYCKV 761

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP  F AA ++ E+ +++KI  +  DA+   ++I  P V  P   F V  ++I ++L+A
Sbjct: 762  HYPKYFYAALLSSEISDIDKISFYFADAKAHGVEIETPDVQFPSSRFVVKGDKILFALSA 821

Query: 842  IKGVGTT-TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK VGT  + +   E      F S EDF  R+  + LN++ LE+ ++AGALD    +R +
Sbjct: 822  IKNVGTGISEKIKEEREKKGEFRSYEDFVERMKKEGLNKKGLEAFIYAGALDSLSGNRHE 881

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             ++SLD +  Y Q   K    +  N+F   K     + +L +       V  E E+  LG
Sbjct: 882  KIESLDKVLDYVQRKAKADDIQQMNLFGDSKKNLV-QFSLSRIEEYPMEVLLEKEKEFLG 940

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +PLD Y+ + +      +           + L  ++ + ++ +T+KG  + +   
Sbjct: 941  FYVSANPLDRYESLYQSFDFDEFNIIKEENMEREVWLYGIIQNLKKTRTKKGDAMAFADL 1000

Query: 1021 SEPAKEYEANFFP 1033
                 +     FP
Sbjct: 1001 ENYQGQIPMVIFP 1013


>gi|257460063|ref|ZP_05625167.1| DNA polymerase III, alpha subunit [Campylobacter gracilis RM3268]
 gi|257442504|gb|EEV17643.1| DNA polymerase III, alpha subunit [Campylobacter gracilis RM3268]
          Length = 1381

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1066 (35%), Positives = 594/1066 (55%), Gaps = 53/1066 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              + HL +H+ YSLL+GA  ++ + + + +    A AITD  N+F A++F Q     GI+
Sbjct: 2    SDYTHLHLHTEYSLLDGANKVSELAELLQSRGTKACAITDHGNMFGAIDFYQTMKKHGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG +  +   D++     G         ++LL     GY+ L+ L SR +L D     
Sbjct: 62   PIIGIETYLHNHDDI-----GDKSDRQRYHLILLAKNETGYKNLMYLSSRAFL-DGFYYY 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF---------NSSQVAEKRLLTFKKLFG 179
             RI    L+E  +EGLI  +   +G ++                 + A+K  L +K++FG
Sbjct: 116  PRINKKILKE-HSEGLICSSACLAGEVEFHLNRSERNLKRGAGGYEAAKKAALEYKEIFG 174

Query: 180  DRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +  Y+ + RH   ++    + +++L+    + ++ATN++ +  ++  +AHDV   ++   
Sbjct: 175  EDFYLEIMRHGIGEQLNVDKDLIRLSREIGVKIIATNDAHYSRKDRAKAHDVYQCISMGK 234

Query: 239  VVSQKDRPRVTPDHYLKNRS-EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             ++  DR +     +      EM  +F+D+PE +ENT EI ++C+               
Sbjct: 235  TINDGDRLKHVVSEFYVKSDEEMRRLFADIPEVIENTAEIVQKCNLKFAFDEKDYAPTPP 294

Query: 298  KECDDIQKEE-----------------ENELR-NKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
                 I+                    ++ L  +    GL+ RL     A     + YR+
Sbjct: 295  NFKFTIEYAARLGLSLPQPDERYSFANDDFLFDHLCREGLKERLKFIDPA---KHEIYRE 351

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RL+ EL +I  M FSGY +IV DFI WAK ++IPVGPGRGS AGS+ AYAL ITD+DP+ 
Sbjct: 352  RLEKELAIIKNMHFSGYMVIVQDFINWAKDHDIPVGPGRGSAAGSICAYALRITDLDPIP 411

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            ++LLFERFLNP R+SMPD D+DFCQ RR EVI YV ++YG   VAQ+ TFG L A+  +R
Sbjct: 412  YNLLFERFLNPSRISMPDIDVDFCQARRGEVIDYVIDQYGKFNVAQVATFGKLLARGVIR 471

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            DV R   MP SQ D++ KLIP+     ++ QA   + + +E   ADP   ++ E +  LE
Sbjct: 472  DVARVCDMPLSQADKMAKLIPDKLGITLT-QAYDAEPKLKEFIDADPIAQQVWEFALGLE 530

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLK 577
            GL R+A  HAAG+VI + PL    P+++  + +    VTQ+   ++E   LIKFDFLGLK
Sbjct: 531  GLNRNAGMHAAGVVISNEPLWNKAPLFKQDKGEDARLVTQYTKNYLEDVDLIKFDFLGLK 590

Query: 578  TLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             L ++  +   + +R    +    I F+D +TY  + +  TLGIFQ+E +GM+     ++
Sbjct: 591  NLDVIDNAAKLVKRRYGRDIVWEEIDFNDRKTYETIQSGNTLGIFQIEGAGMQDLAMNLR 650

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            PD  EDIIA++SLYRPGP+D I  +   K+G+ K   I P +  +L+ T G+I+YQEQVM
Sbjct: 651  PDRFEDIIAMISLYRPGPMDLIPDFIRIKHGELKASYIFPELKEILEPTYGIIVYQEQVM 710

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            QI Q + G+SL +AD++RRAMGKK ++++   +E+++SGA + G     A  +F+L+ KF
Sbjct: 711  QIVQKVGGFSLGDADLVRRAMGKKDEKKLAHMREQYLSGAKELGFDVAKADELFDLIMKF 770

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A YGFNKSHAAAY++I++QTA++KT+YP EF+AA +T E  N +KI K+  +A +  I +
Sbjct: 771  ASYGFNKSHAAAYSMITFQTAYLKTYYPAEFMAALLTSEEGNTDKISKYIDEASRLGIGL 830

Query: 817  MPPSVNTPCVDFKVGDNR-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
            +PPS+N     F V D+        I Y L AIKGVG     +I+E  ++  F S++DF 
Sbjct: 831  LPPSINQSLRGFSVVDDENSKSGTSIIYGLGAIKGVGAAAIENILELQSEAKFQSIDDFA 890

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            SRVD+ ++N++V+ESL++AGA+DC G SR+ ++Q+++NI +  + + + + +   ++F  
Sbjct: 891  SRVDNFRVNKKVIESLIYAGAMDCLGKSRLAMIQNMENILEVMKKITEIKKDAASSLFGE 950

Query: 930  EKGTFSD-KITLEKFS-VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
            ++   S   ++              + EQ+ +G Y SGHPLD YK  +  +         
Sbjct: 951  DEDMTSGMSVSFVDTDKEFPQGEILKFEQQTVGVYLSGHPLDDYKEEIEGIDYTLSSAFS 1010

Query: 988  ATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                    +     +     + T+ G ++G +   +    +E   F
Sbjct: 1011 EIEGDSAEVLSVGRIEDLSTRMTKTGKKMGILNVLDLHGSFELAVF 1056



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL----AAMVVSKQQKKTRKGSRI 1015
            G + S +PL  Y   L  +      E        +  +       + +   + T+ G ++
Sbjct: 1114 GVFLSENPLKAYAAQLGAIAHTKSNEFDELAGDEDASVKILCVGKIENVHTRTTKSGKQM 1173

Query: 1016 GWVTFSEPAKEYEANFF 1032
              +T  + A  +E + F
Sbjct: 1174 ANLTVLDLAGSFEMSAF 1190


>gi|213963506|ref|ZP_03391759.1| putative DNA polymerase III, alpha subunit subfamily [Capnocytophaga
            sputigena Capno]
 gi|213953786|gb|EEB65115.1| putative DNA polymerase III, alpha subunit subfamily [Capnocytophaga
            sputigena Capno]
          Length = 1485

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/1085 (31%), Positives = 558/1085 (51%), Gaps = 78/1085 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--------- 61
            F HL  H+ +S+L+   S+ +++   A ++ PA+A+TD+ N+ +A  F Q          
Sbjct: 255  FAHLHNHTQHSILQSTTSIKDLVKVTAKEKMPAVALTDSGNMMAAFHFVQAVQGHNKEAE 314

Query: 62   -----ACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
                 A   G       I+PIIGC+ +I         +  KT       +V+L    +GY
Sbjct: 315  AKNKEAEEKGETPTETLIKPIIGCEFNIC------ENHLDKTRQDNGYQVVILAKNKQGY 368

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L ++ S            RI  + +++  ++ L++L+GG +G I        ++ AE+
Sbjct: 369  HNLTKMASIASTKG-FYYVPRIDKTIVEQYKSD-LMVLSGGMNGEIPSKILNIGTKQAEE 426

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             LL +K+ FG+  Y+ + RH   D  R    +V+ +  + + L+ATNN+ +L ++D  AH
Sbjct: 427  ALLWWKEQFGEDFYLEVMRHNQEDENRVNETLVEFSKKYGVKLIATNNTFYLHKKDANAH 486

Query: 229  DVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            D+L+ V                       ++Y K  +EM ++F D+PEA+ N  EI  + 
Sbjct: 487  DILLCVKDGEKQKTPIGRGRGYRFGMPNNEYYFKTSAEMKALFKDIPEAILNIQEIIDKV 546

Query: 282  SFILQVHAPILPRFIEKECD------DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
                     +LP+F   E          +K E N LR+    G + +  +          
Sbjct: 547  EPYGLARDILLPKFDIPEEFQVSDDLTGKKGENNYLRHLTYEGAKRKYPE-------ITD 599

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
            + R+RLDFEL++I +  + GYFLIV DFI  A++  + VGPGRGS AGS  A+ L IT++
Sbjct: 600  EVRERLDFELSIIEKTGYPGYFLIVQDFIAAARRMGVSVGPGRGSAAGSAVAFCLDITNM 659

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DP+++ LLFERFLNPDR+SMPD DIDF    R +VI YV +KYG  +VA+IIT+G + AK
Sbjct: 660  DPIKYDLLFERFLNPDRVSMPDIDIDFEDSGRQDVINYVIDKYGESQVARIITYGKMAAK 719

Query: 456  AALRDVGRALQMPYSQVDRLCKL----------IPNDPAHPVSLQAIADD----SRFREA 501
            +A++D  R L +P  + +RL  L          +       +  +  +++       +  
Sbjct: 720  SAIKDTARVLDVPLQESNRLAGLVPNGVSSLGKMFGWDDKTLKEKVRSEELLKVDELKRL 779

Query: 502  --RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
                 +    + ++ +  +EG  R+   HA G++I    ++  VP+     SDL VTQF+
Sbjct: 780  LAGEGEEESTQTIQQANIIEGSVRNTGIHACGVIITPDDITNFVPVALAKDSDLFVTQFD 839

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTL 618
               +E AGL+K DFLGL TLTL++ +++ + Q      D    P DD +TY L     T+
Sbjct: 840  NSVVESAGLLKMDFLGLSTLTLIKDTIENIKQTHNIELDAEAFPLDDKKTYELFQRGETV 899

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            GIFQ ES+GM++ +  ++P    D+IA+ +LYRPGP++ I  +  RK+G E I    P +
Sbjct: 900  GIFQYESTGMQKYMRELKPTVFADLIAMNALYRPGPLEYIPSFIKRKHGIEPIEYDLPDM 959

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +  LKET G+ +YQEQVM ++Q L+G++  EADVLR+AMGKK    + K K +FI+ AS+
Sbjct: 960  EEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQIAVLAKMKPKFITQASE 1019

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             G        I+    KFA Y FNKSH+  YA + YQTA++K +YP E++AA ++  M++
Sbjct: 1020 KGHDAQKLEKIWADWEKFAAYAFNKSHSTCYAWVGYQTAFLKANYPAEYMAAVLSNNMND 1079

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS 857
            ++ I  F ++  +  I+++PP VN     F V  +  I + + A+KGVG      I+E  
Sbjct: 1080 IKTITFFLEECHRMGIKVLPPDVNESLYKFTVNKNGDIRFGMGAVKGVGKAAVDTIVEQR 1139

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQ 909
             ++P+ S+ D   RVD K +N++  ES+  AG  D F    R Q   +       L+   
Sbjct: 1140 QERPYTSIFDLAKRVDYKSINKKAFESIALAGGFDSFTNVHRAQYFHAEADGIPFLEKAI 1199

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++    ++++ +   ++F  E      +  + K     +  +   E+ V+G Y SGHPLD
Sbjct: 1200 RFGTKYQESKNSAQMSLFGGESEVDVPEPAVPKCETWGNLEQLRREKEVVGIYISGHPLD 1259

Query: 970  VYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             +K  L         +           + +A MV   Q + ++ G   G++T  +    Y
Sbjct: 1260 DFKHELHNFCNISLSQLQDLNSFINRELTVAGMVADLQHRTSKNGKGFGFLTLEDYDGSY 1319

Query: 1028 EANFF 1032
            E   F
Sbjct: 1320 EFKLF 1324


>gi|167737755|ref|ZP_02410529.1| DNA polymerase III subunit alpha [Burkholderia pseudomallei 14]
          Length = 1103

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1044 (38%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+
Sbjct: 110  YRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   
Sbjct: 230  RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GL+ RL Q    +         Y QRLDFE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++   +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L AIKG G      ++ A  +KPF  L DFC R+D + +NRR +E+++ A
Sbjct: 826  GKRSRTIRYGLGAIKGSGQNAIEEVLRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R QLL S+    + A+    N       +F    G  + +  L      + 
Sbjct: 886  GAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + + 
Sbjct: 943  KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022


>gi|298346985|ref|YP_003719672.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
 gi|298237046|gb|ADI68178.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063]
          Length = 1226

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/1074 (32%), Positives = 555/1074 (51%), Gaps = 57/1074 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S  FVHL VH+ YS+L+GA  +  ++ K   +QQ A+AITD   LF A EF Q+   
Sbjct: 1    MPSS-DFVHLHVHTDYSILDGAAKIKRLVAKAVENQQKAVAITDHGYLFGAFEFYQECRN 59

Query: 65   AGIQPIIGCQLDIDMQD-------------NLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
            AGI+PIIG +  +                   +      +       + LL  T EG   
Sbjct: 60   AGIKPIIGLEAYVTPGTSRFDTTRVQWGTLEQQKAGDDVSARGAYTHMTLLSHTTEGMHN 119

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L  L S   L  Q  +  R     L+    EGLI   G  SG +         Q A +  
Sbjct: 120  LFRLGSYASLDGQMGKWPRADRELLERYH-EGLIGTAGCPSGEVQTRLRLGQYQEAVRAA 178

Query: 172  LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
               + +FG D  YV L  H    +      +++LA     P++ATN+S ++ +ED E  D
Sbjct: 179  GELQDIFGKDYFYVELMDHGLSIENRVRKDLLRLAREINAPIIATNDSHYVYKEDREIQD 238

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             ++ +     +S  DR R     Y      EM  +F+++PEAL+NT+ IA +C+      
Sbjct: 239  AMLCINSGDRLSNPDRFRFDGTDYYLRPSEEMHELFAEIPEALDNTLLIAEQCNVEFPDV 298

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                   +        ++E +    +   GL+ R   G       +++ R+R D+E+ +I
Sbjct: 299  KEGTFMPVFPV--PAGEDEVSWFIKEVERGLQYRFPNG------ISEEVRKRADYEVEII 350

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F  YFLIV+D+IQWAK N I VGPGRGSGAGS+ AYA+ ITD+DP++  LLFERFL
Sbjct: 351  VQMGFPSYFLIVSDYIQWAKDNGIRVGPGRGSGAGSMVAYAMRITDLDPIKHGLLFERFL 410

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D+DF   RR +VI YV  KYG ++V+Q++T+G++++K AL+D  R     
Sbjct: 411  NPERVSMPDIDVDFDDRRRQDVIDYVTRKYGKDKVSQVVTYGTIKSKQALKDAARISGAD 470

Query: 469  YSQVDRLCKLIPN-DPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLE 519
            +S+ ++L K +P       +              +   FR+    DP   ++ +++  +E
Sbjct: 471  FSKGEKLTKAMPPAVMGKDIPLSGMYNPQHPRYKEAEEFRKVVAEDPFNRQIFDLAAGVE 530

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R    HA  +++    L+ ++PM +  +    +TQF+    E  GL+K DFLGLK L
Sbjct: 531  GMVRQWGVHACAVIMSRETLTDVIPMMKRPQDGAMITQFDYPTCEHLGLLKMDFLGLKNL 590

Query: 580  TLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  +LD +        DL  +  DD  TY LL+T  TLG+FQL+  GMR  L+ ++P 
Sbjct: 591  TIISDALDNIKINGKTPPDLERLDVDDKATYELLSTGETLGVFQLDGGGMRTLLKQLRPT 650

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQ 692
              +DI ALV+LYRPGP+  ++   Y  RKNG +KI  IH  ++  LK     T G+IIYQ
Sbjct: 651  EFDDISALVALYRPGPMGANSHTNYAFRKNGLQKIEPIHSELEEPLKDILGYTYGLIIYQ 710

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ  +F  G  ++G S+     ++ +
Sbjct: 711  EQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMIEHGYSEDCCETLWGI 770

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T +  + +K+  +  + R+ 
Sbjct: 771  LVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQ-TDKDKLGMYLNEVRRM 829

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
             I+++PP VN     F    N I + LA+I+ VG      I++A  +   + S  DF  +
Sbjct: 830  GIKVLPPDVNQSYGVFAPDGNDIRFGLASIRNVGENVVAEIIKARQEKGAYTSFSDFLKK 889

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V ++  N+R + SL+ AGA D FG  R  L    +   +     ++  +N   ++FA  +
Sbjct: 890  VPAEVCNKRTIGSLIKAGAFDAFGAPRSALTAIHEQAVEAVVSTKRQESNGQFDLFAALE 949

Query: 932  GTFSDKI---------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
               ++            +   S    +     E+ +LG Y S HPL     +L  +    
Sbjct: 950  MEGTESPDNLLGSASIDIPDISEWPKNELLAFEREMLGMYVSDHPLSGMNRVLEGLAEDR 1009

Query: 983  YEESVATI---RGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
              +  +       + +++A +V +   K +++ G +       +     E  FF
Sbjct: 1010 IVDLTSDEGKGNDSPVKIAGLVTAVNVKISKRSGQQWAIAKIEDMTGSVEVLFF 1063


>gi|53725488|ref|YP_103508.1| DNA polymerase III subunit alpha [Burkholderia mallei ATCC 23344]
 gi|67640628|ref|ZP_00439428.1| DNA polymerase III, alpha subunit [Burkholderia mallei GB8 horse 4]
 gi|124383354|ref|YP_001026814.1| DNA polymerase III subunit alpha [Burkholderia mallei NCTC 10229]
 gi|126449054|ref|YP_001079902.1| DNA polymerase III subunit alpha [Burkholderia mallei NCTC 10247]
 gi|167000890|ref|ZP_02266691.1| DNA polymerase III, alpha subunit [Burkholderia mallei PRL-20]
 gi|254175785|ref|ZP_04882445.1| DNA polymerase III, alpha subunit [Burkholderia mallei ATCC 10399]
 gi|254202193|ref|ZP_04908556.1| DNA polymerase III, alpha subunit [Burkholderia mallei FMH]
 gi|254207520|ref|ZP_04913870.1| DNA polymerase III, alpha subunit [Burkholderia mallei JHU]
 gi|254359936|ref|ZP_04976206.1| DNA polymerase III, alpha subunit [Burkholderia mallei 2002721280]
 gi|52428911|gb|AAU49504.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia mallei ATCC
            23344]
 gi|124291374|gb|ABN00643.1| DNA polymerase III, alpha subunit [Burkholderia mallei NCTC 10229]
 gi|126241924|gb|ABO05017.1| DNA polymerase III, alpha subunit [Burkholderia mallei NCTC 10247]
 gi|147746440|gb|EDK53517.1| DNA polymerase III, alpha subunit [Burkholderia mallei FMH]
 gi|147751414|gb|EDK58481.1| DNA polymerase III, alpha subunit [Burkholderia mallei JHU]
 gi|148029176|gb|EDK87081.1| DNA polymerase III, alpha subunit [Burkholderia mallei 2002721280]
 gi|160696829|gb|EDP86799.1| DNA polymerase III, alpha subunit [Burkholderia mallei ATCC 10399]
 gi|238521386|gb|EEP84838.1| DNA polymerase III, alpha subunit [Burkholderia mallei GB8 horse 4]
 gi|243063197|gb|EES45383.1| DNA polymerase III, alpha subunit [Burkholderia mallei PRL-20]
          Length = 1174

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1044 (39%), Positives = 605/1044 (57%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    Y+
Sbjct: 110  YRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   +   
Sbjct: 230  RRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GL+ RL Q    +         Y QRLDFE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++   +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNDRFEPVAEAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++ A
Sbjct: 826  GKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R QLL S+    + A+    N       +F    G  + +  L      + 
Sbjct: 886  GAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + + 
Sbjct: 943  KRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022


>gi|212715528|ref|ZP_03323656.1| hypothetical protein BIFCAT_00426 [Bifidobacterium catenulatum DSM
            16992]
 gi|212660895|gb|EEB21470.1| hypothetical protein BIFCAT_00426 [Bifidobacterium catenulatum DSM
            16992]
          Length = 1196

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/1082 (30%), Positives = 550/1082 (50%), Gaps = 64/1082 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S +FV L  H+ YSLL+GA  + +++ +      PA+ ITD  N+  A E    A  
Sbjct: 1    MATSGNFVQLHNHTHYSLLDGASKIPDLVKRAKELNMPAVGITDHGNMHGAYEMWSTAVK 60

Query: 65   AGIQPIIGCQLDIDMQD---------------------NLKMTNQGKTPFPTVPSIVLLV 103
             G++PIIG +  +  +                      + +      +    +  + +  
Sbjct: 61   EGVKPIIGIEAYVTPETARQDQTRVSWDTNWNPDIDPQHRRRNPNDVSGGGLITHLTMWA 120

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
             T EG   L++  +   L  +  +  R+    L +  ++G+I  +G  SG I        
Sbjct: 121  ETDEGLVNLMKASTDANLEGRVMRYPRMDKEILAKY-SKGIIASSGCPSGIIQTRLLLGQ 179

Query: 164  SQVAEKRLLTFKKLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLS 221
               A +     + +FG D  Y+    H    ++     ++ +A     PL+ATN+S ++ 
Sbjct: 180  FDEALRAAGELQDIFGRDNFYIEFMDHGLKIEKQVTDGLLDIAKKLNAPLLATNDSHYVR 239

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
             ED  + D ++ +   + + +  R +     +YLK+  EM  +F D+PEA +NT+EIA R
Sbjct: 240  AEDAGSQDAMLCINSGSTLDEPGRFKFDGTGYYLKSAEEMRELFKDIPEACDNTLEIAER 299

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
            C+ +   H            +    +E +    K   GLE R        G+   +  ++
Sbjct: 300  CNVMFDDHEDGAFMPQFDCPEG--WDETSLFLRKVEEGLEQRY------DGHPPIEVLKQ 351

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
             D+E  VI +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++ 
Sbjct: 352  ADYECGVICQMQFCGYFLVVADYINWAKSHGVMVGPGRGSAAGAMVAYAMGITELDPIKH 411

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             L+FERFLNP+R+S+PD D+DF  D R  V+ YV +KYG ++VAQ + +G+++ K AL+D
Sbjct: 412  GLIFERFLNPERVSLPDIDVDFDPDGRGRVLDYVGDKYGRDKVAQCVIYGTIKTKQALKD 471

Query: 461  VGRALQMPYSQVDRLCKLIPN--DPAHPV--------SLQAIADDSRFREARLADPSVDR 510
              R +   +S  +R+ K +P        +        + +  A+   FRE   +DP   R
Sbjct: 472  SARIMGYEFSMGERITKALPPAQTGGKDIPLRDIFEPTSKRYAEAREFRELYDSDPDAKR 531

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            + + +  +EGL R    HA   ++G  P+S   P+  +       T       E  GL+K
Sbjct: 532  VTDEAMGIEGLIRQTGVHACATIMGSEPISNTSPL-LERTDGTVTTTLEYHTCETLGLVK 590

Query: 571  FDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             DFLGL  LT+++ +L+ +      ++D + IP DD  TY LL+   TLG+FQL+S GMR
Sbjct: 591  MDFLGLSNLTVIRDTLNNIEANGKERIDHTKIPLDDRATYDLLSRGDTLGVFQLDSDGMR 650

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLK 683
              L+ ++P+   DI AL++LYRPGP+D      Y  RKNG +KI  IHP     +  +L 
Sbjct: 651  SLLKTLKPNNFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKEVLD 710

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+I+YQEQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+
Sbjct: 711  ETYGLIVYQEQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSQ 770

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
              A  ++++L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K  
Sbjct: 771  EAAQAVWDILVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKDKTA 830

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS--ADKP 861
             +  +AR+  IQ++ P VN    ++    + + + L AI+ VG      I++    +   
Sbjct: 831  LYLGEARRMGIQVLSPDVNESVYEYSAVGDVVRFGLGAIRNVGKAAVDAIVKERDGSHGR 890

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + +  DF  RV  + LNRR++ESL+ AGA D    +R  L    +        +++ +  
Sbjct: 891  YVNFPDFIKRVPMEALNRRLVESLIKAGAFDSIDPNRRALFTIHEAAINSVVGLKRKQAE 950

Query: 922  KHENIFAHEKGTFSDK-------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
               ++FA  + +  D        +++      +   +   E+ +LG Y S HPL   + I
Sbjct: 951  GQFDLFADLEDSGEDDAGMGDAMVSVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQSI 1010

Query: 975  LRKMGIKGYEES----VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            L  +                 G  + +A ++ +  ++ ++KG+    VT  +     +  
Sbjct: 1011 LVSLSEMSIAHLIDRAANMPDGQQVTVAGLITNVDRRVSKKGNPWAIVTIEDLESSIQCM 1070

Query: 1031 FF 1032
            FF
Sbjct: 1071 FF 1072


>gi|121600233|ref|YP_992382.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia mallei SAVP1]
 gi|121229043|gb|ABM51561.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia mallei SAVP1]
          Length = 1686

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1046 (39%), Positives = 605/1046 (57%), Gaps = 38/1046 (3%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
              +   P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A
Sbjct: 511  APMSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEA 569

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              AGI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L 
Sbjct: 570  RDAGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLT 619

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +Q +    +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    
Sbjct: 620  NQYRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGF 679

Query: 183  YVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ LQR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++
Sbjct: 680  YIELQRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILA 739

Query: 242  QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               R  R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   + 
Sbjct: 740  NPRRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDG 799

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357
              +    ++ L   +  GL+ RL Q    +         Y QRLDFE   I +M F GYF
Sbjct: 800  MSL----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYF 855

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPD
Sbjct: 856  LIVADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPD 915

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + K
Sbjct: 916  FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAK 975

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP  P   V++   + ++   +E    +  V +LL+++Q++EGL R+   HA G++I  
Sbjct: 976  LIPFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAP 1035

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593
              L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +     
Sbjct: 1036 GKLTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 1095

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPG
Sbjct: 1096 ENWSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPG 1155

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+L
Sbjct: 1156 PMDLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 1215

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++
Sbjct: 1216 RRAMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLA 1275

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            Y TAW+K H+P EF+AA+MTL MD+ +K+K    D     + ++PP +N     F+    
Sbjct: 1276 YYTAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNDRFEPVAE 1335

Query: 834  R-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                    I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+++
Sbjct: 1336 ADGKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMI 1395

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AGA D    +R QLL S+    + A+    N       +F    G  + +  L      
Sbjct: 1396 RAGAFDSLHENRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAW 1452

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            +   R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + 
Sbjct: 1453 DDKRRLQEEKGALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRT 1509

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + T++G  +      +   + E   F
Sbjct: 1510 QMTQRGK-MVIALLDDGTGQCEVTVF 1534


>gi|113866925|ref|YP_725414.1| DNA polymerase III subunit alpha [Ralstonia eutropha H16]
 gi|113525701|emb|CAJ92046.1| DNA polymerase III alpha subunit [Ralstonia eutropha H16]
          Length = 1173

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1060 (39%), Positives = 610/1060 (57%), Gaps = 49/1060 (4%)

Query: 5    LE--KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            +    +P FVHL++HS YS+++G + L + +   AAD   A+A+TD  N F  + + ++A
Sbjct: 1    MSPMSAPRFVHLRLHSEYSIVDGIVRLEDAVKAAAADGMGALALTDLANAFGLIRYYKEA 60

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               G++P++G  + +   ++                ++LLV    GY  L  L+SR +L 
Sbjct: 61   RGKGVKPVVGADVWLTNAEDRDKP----------SRLLLLVQDRRGYLNLCMLLSRAWLG 110

Query: 123  DQGKQSVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            +Q +    I  +W  E G +      GLI L+G   G I  A    ++  A +    +  
Sbjct: 111  NQHRGRAEIDPAWFLEPGEDDLPLATGLIALSGAMGGDIGMALANGNADGARRAAQHWST 170

Query: 177  LFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            +F  R Y+ LQR           Q VQLA   +LP+VAT+   F++ +DY AH+  + +A
Sbjct: 171  VFAQRFYIELQRAGNAGTDAYVQQAVQLAAELQLPVVATHPVQFMTPDDYTAHEARVCIA 230

Query: 236  HSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
               +++   R  R T D Y K + EM ++F+D+P ALEN VEIARRC+  L++  P LP 
Sbjct: 231  EGELLANPRRTRRFTTDQYFKTQDEMCALFADIPSALENAVEIARRCNLTLELGKPRLPL 290

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARM 351
            F   +   +    ++ L   A  GLE RLA        +     +Y  RL+FE   I +M
Sbjct: 291  FPTPDGMSL----DDYLVYMAKDGLEKRLAVLFPDEAVRESKRPEYYARLEFETGTIIKM 346

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+
Sbjct: 347  GFPGYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPE 406

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y  
Sbjct: 407  RVSMPDFDIDFCQHGRDRVITYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYGF 466

Query: 472  VDRLCKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            VD + KLIP  P   V+++    ++    E    +  V +LLE++Q++EG+ R+   HA 
Sbjct: 467  VDGIAKLIPFKPGKLVTIEEAKKEEPLLTERESNEEEVRQLLELAQRVEGMTRNVGMHAG 526

Query: 531  GIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            G++I    L+   P+Y     +      V+Q++   +E AGL+KFDFLGL TLT+L  + 
Sbjct: 527  GVLIAPGRLTDFCPLYTQGAQNDGMSGVVSQYDKDDVEAAGLVKFDFLGLTTLTILDWAE 586

Query: 587  DFLAQ---RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
             ++ +        + S IP DD   + +L T  T+ +FQLES GM+  L+  +PD  EDI
Sbjct: 587  RYIRRLDPSKADWNCSHIPLDDGPAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDI 646

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            IALV+LYRPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ 
Sbjct: 647  IALVALYRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIG 706

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            GYSL  AD+LRRAMGKK  EEM + +  F  GA KNG+S   A +IF+L+ KFA YGFNK
Sbjct: 707  GYSLGGADLLRRAMGKKKPEEMAQHRVMFREGADKNGLSAQQADDIFDLMEKFAGYGFNK 766

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAAAYA+++Y TAW+K H+P EF+AA+M+L MD+ +K+K   +D +   + ++PP VN 
Sbjct: 767  SHAAAYALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYEDCKLNKLAVLPPDVNA 826

Query: 824  PCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                F   D   I Y L  IKG G      I+ A  ++PF  L DFC RVD +++NRR +
Sbjct: 827  SEYRFAPTDPKTIRYGLGGIKGSGQGAIEDILRAREERPFTDLFDFCERVDRRQVNRRTI 886

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLE 941
            E+L+ AGA D    +R QLL S+    + A+  +K  +    ++F          +  L 
Sbjct: 887  EALIRAGAFDSLNDNRAQLLASVPIAMEAAE--QKAESANQVSLFDLMGDAGDAHRPELL 944

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------GNNI 995
                 +     + E++ LG+YFSGH  D Y+  +R+            ++      G ++
Sbjct: 945  DEPRWSPKRTLQEEKQALGYYFSGHLFDAYRDEVRRFNKGTLAALEKEVQGNGGGFGRDV 1004

Query: 996  R---LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            R   +A ++   + + T++G  +  VT  +     E   F
Sbjct: 1005 RGKTIAGVISGVRTQMTQRGK-MVIVTLDDGTGLVEMTVF 1043


>gi|254282070|ref|ZP_04957038.1| DNA polymerase III, alpha subunit subfamily, putative [gamma
            proteobacterium NOR51-B]
 gi|219678273|gb|EED34622.1| DNA polymerase III, alpha subunit subfamily, putative [gamma
            proteobacterium NOR51-B]
          Length = 1142

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1034 (38%), Positives = 591/1034 (57%), Gaps = 41/1034 (3%)

Query: 17   HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
            H+ YSL++G + +  ++  +AA + PA+AITD  N +  ++  + A +AGI+ I+G    
Sbjct: 2    HTEYSLVDGLVKIKPLMSALAAAKMPAVAITDLTNFYGLIKAYKAAASAGIKLIVGADFW 61

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            +   D+    +          S+ LL     GYQ L  L++R +   Q      +  +WL
Sbjct: 62   VVDPDDPDRHH----------SLCLLAQDETGYQNLTTLITRAWRDGQHHGRASVQRAWL 111

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY-DRY 195
             +   EGLI L+GG  G + +       + A + L+ +++ F DR Y+ LQR     +  
Sbjct: 112  GD-HAEGLIALSGGRLGHVGQLLLLQHPEEARQALIDYQRDFPDRFYIELQRTGRPGEED 170

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYL 254
                 V LA   + P+VATN+  FL+  ++EAH+  + +     +    RPR  +   +L
Sbjct: 171  YIHAAVALAAELDCPVVATNDVRFLTPSEFEAHEARVCIGEGRTLDDPRRPRDYSEKQFL 230

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
            ++  EM ++FSD+PEA+ENTVEIARRCS  +++  P LP F   E    +   E+ L + 
Sbjct: 231  RSAEEMAALFSDIPEAIENTVEIARRCSVSIRLGEPFLPNFPVPE----EHSTESFLAHL 286

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
            A  GL VRL             Y++RLDFEL +I  M F GYFL+V DFI+WAK+  IPV
Sbjct: 287  ANEGLAVRLRALG---NPDPAPYQERLDFELKIINEMGFPGYFLVVMDFIRWAKQQGIPV 343

Query: 375  GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
            GPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP R+SMPDFD+DFC DRRDEVI YV
Sbjct: 344  GPGRGSGAGSLVAYALEITDLDPLTYDLLFERFLNPQRVSMPDFDVDFCMDRRDEVIDYV 403

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
             + YG E V+QIITFG++ AKA +RDV R    P+   D++ KLIP +    +    +  
Sbjct: 404  ADMYGREAVSQIITFGTMAAKAVVRDVARVQDKPFGLADKMSKLIPFEVGMTLEKA-LRQ 462

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
            +   ++    D +   + +++ +LEG  R+   HA G+VI    L+   P+Y D      
Sbjct: 463  EDAIKDLLREDSAAQEIWDMAVQLEGATRNVGKHAGGVVIAPSRLTDFSPLYCDEEGGGV 522

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY 609
            VTQ++   +E+AGL+KFDFLGL+TLT++  ++  + +R  +      D+S +P DD   +
Sbjct: 523  VTQYDKNDVEEAGLVKFDFLGLRTLTIIDWAVRMIDERRAREGEAKLDISTLPLDDPAVF 582

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YN 662
             +L    T  +FQLES GM++ ++ ++PDC EDIIALV+L+RPGP+ + +V       + 
Sbjct: 583  KVLQQAETTAVFQLESRGMKELIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHG 642

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              +         HP++ P+L+ T G+I+YQEQVMQIAQ L+GY+L  AD+LRRAMGKK  
Sbjct: 643  REQVSYPDAQYQHPVLQPILEPTYGIILYQEQVMQIAQELAGYTLGGADLLRRAMGKKKL 702

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            EEM KQ+  F  GAS+ GI   +A  IF+L+ KFA YGFNKSH+AAYA++SYQTAW+K H
Sbjct: 703  EEMAKQRSVFAEGASRKGIDPDLATRIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLKAH 762

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAA 841
            YP EF+AA M+ E+DN +K+     + +Q  I + PP  N     F V D   I Y L A
Sbjct: 763  YPAEFMAAVMSSELDNTDKLITLRDECKQLGITVRPPDANEGEYAFSVNDRGEIIYGLGA 822

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKG+G      I+ A    PF  L +FC R D +K+NRR +E+L+ +GALD  G  R  +
Sbjct: 823  IKGLGEGPVESILAARNAGPFVDLFEFCDRTDPRKVNRRAIEALINSGALDGLGVERWIM 882

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF---SDKITLEKFSVENSSVRFENEQRV 958
            + ++++  + A+    N      ++F                      +S      E+  
Sbjct: 883  MSAVEDALRAAEQAANNTAAGMGDLFGDVLAAGHRHDPYEHHRNARPWSSKRLLNGEKES 942

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +G + SGHP++ Y+  +RK   +   +  A    N+  +A ++VS +  +T++G  +  +
Sbjct: 943  IGSFLSGHPMEEYEAEVRKFASRRIRDLQA---DNSATVAGLIVSVRTIRTQRG-VLAVL 998

Query: 1019 TFSEPAKEYEANFF 1032
               + + + EA  F
Sbjct: 999  GIDDGSGQIEATVF 1012


>gi|78485459|ref|YP_391384.1| DNA polymerase III, alpha subunit [Thiomicrospira crunogena XCL-2]
 gi|78363745|gb|ABB41710.1| DNA polymerase III, alpha subunit [Thiomicrospira crunogena XCL-2]
          Length = 1158

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/1050 (39%), Positives = 606/1050 (57%), Gaps = 47/1050 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YS+++  + + + +      QQPA+A+TD  N+F+ ++F   A  AGI+PI
Sbjct: 4    FVHLHVHSEYSVVDSTIRVKSAISLAQKSQQPALALTDQMNMFALVKFYTAAMDAGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG----K 126
            IG  L I+ +D              V  +V L    +GY  L  L+S  YL +Q      
Sbjct: 64   IGSDLLIEAEDG------------NVFKVVCLCQNDQGYLNLSHLISMAYLKNQKVVQND 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I   WL E   EGLI+L+GG  G + +A       +A KR+  +   F DR Y+ L
Sbjct: 112  MKALIKQEWLAEF-NEGLIILSGGKDGDVGQAILAEKPNLAAKRVSWWASYFPDRFYLEL 170

Query: 187  QRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             R     +    +  V +A  +ELP+VATN+  F   ED++AH+V + +    ++   +R
Sbjct: 171  IRTGRDKEELYIAGAVDVAQRYELPVVATNDIRFEQAEDFDAHEVRVCIHDGYILDDPNR 230

Query: 246  P-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P R + + Y ++  EMV +F D+PEA+ENTVEIA+RC+  L +    LP F   E     
Sbjct: 231  PKRYSEEQYYRSSEEMVKLFEDIPEAIENTVEIAKRCNVSLTLGTYFLPDFPVPEG---- 286

Query: 305  KEEENELRNKAVAGLEVRLAQG-----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               +     ++  GL+ RL          A     + Y  RL FEL++I +M F GYF I
Sbjct: 287  LTLDEYFILESQKGLDERLNFLFGDLSPEAFAEKRKAYDDRLKFELDIITQMGFPGYFFI 346

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFIQW K + +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 347  VADFIQWGKNHQVPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 406

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC +RRDEVI YV  +YG + V+QI+TFG++ AKA +RDVGR L   Y  VD + KLI
Sbjct: 407  VDFCMERRDEVIDYVARQYGQDHVSQIVTFGTMAAKAVVRDVGRVLGNGYGMVDSIAKLI 466

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            PND    +   A+  + + +E    +  V  L++++ KLEG  R+   HA G+VIG +PL
Sbjct: 467  PNDLGIKL-QGALDQEEQLQERYDNEEDVRLLIDLALKLEGTVRNTGKHAGGVVIGPKPL 525

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----RGV 594
                P+  +      VTQ +   +E AGL+KFDFLGL+TLT++  +L F+ +        
Sbjct: 526  DHFCPVLCEPDGSSVVTQLDKNDVETAGLVKFDFLGLRTLTIIDWALHFINEGKQPGDEG 585

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V++  IP DD +T+ L+ T  T G+FQLESSGM+  +  ++PDC EDIIALV+L+RPGP
Sbjct: 586  FVEIERIPLDDSQTFDLIKTGKTTGVFQLESSGMQNLIVRLRPDCFEDIIALVALFRPGP 645

Query: 655  IDNIVVYNNRKNGKEK-------IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +++ +V N       K           H  +  +L+ T GVI+YQEQVMQIAQ+L+GY+L
Sbjct: 646  LESGMVDNFIARKHGKEKVSYPDAQYQHDSLKTILEPTYGVILYQEQVMQIAQVLAGYTL 705

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM KQ+  F  GA KN +   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 706  GGADMLRRAMGKKKPEEMAKQRSIFKDGAIKNNVDGDLAMKIFDLVEKFAGYGFNKSHSA 765

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQ+AW+KTHYP EF+AA ++ +MDN +K+     +     I +  PS+N   + 
Sbjct: 766  AYALVSYQSAWLKTHYPAEFMAAQISSDMDNTDKVVHMVNECYAMGIDVAQPSINEGEIH 825

Query: 828  FKV--GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
            FK   G   + Y L AIKGVG +    I+     + P+  L DFC RV ++K+N+RV+E+
Sbjct: 826  FKAIRGQKAVRYGLGAIKGVGESALEGIVAERKQNGPYQDLFDFCLRV-TRKVNKRVIEA 884

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKF 943
            L+ AGA+DC   +R  +L S+    + A+  +K+      ++F       ++ +  L   
Sbjct: 885  LISAGAMDCIHNNRQAMLDSVGMALQKAEQKQKDEEAGQTDLFGDVTSFEAENESKLVDV 944

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                  +R + E+ VLG Y +GHP+++Y+  L KM  +                A ++V 
Sbjct: 945  PEMPEKLRLKGEKDVLGLYMTGHPIEIYREELDKMVEQKLSALRPEKWNKK-WAAGLIVE 1003

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + K TR GSR+G++   +     +    P
Sbjct: 1004 ARNKVTRNGSRMGFLAIDDQTARLDVVLRP 1033


>gi|315604412|ref|ZP_07879478.1| DNA-directed DNA polymerase III alpha subunit [Actinomyces sp. oral
            taxon 180 str. F0310]
 gi|315314118|gb|EFU62169.1| DNA-directed DNA polymerase III alpha subunit [Actinomyces sp. oral
            taxon 180 str. F0310]
          Length = 1180

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/1064 (32%), Positives = 545/1064 (51%), Gaps = 46/1064 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL  HS YS+L+GA     + ++ A   QPAI +TD   LF A +F      AG+
Sbjct: 2    ADSFVHLHNHSEYSMLDGAAKTKAMAEEAARLGQPAIGLTDHGYLFGAYDFYTNCVNAGV 61

Query: 68   QPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            +PIIG +  +                    +   +   +   + L+  + EG   L  L 
Sbjct: 62   KPIIGLEAYVTPGTSRFDRQKVLWGEPWQRSDDVSAGGSYNHLTLVAYSTEGMLNLFRLG 121

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S      Q  +  R     L +   EGLI+ TG  SG +           A       + 
Sbjct: 122  SYASTDGQFGKWPRADKELLSQFH-EGLIVFTGCPSGAVQTRLRLGQWDEAVAEAAELRD 180

Query: 177  LFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            +FG +  YV +  H    +R    QV+ +A     PLVATN+S ++  +D +  D L+ +
Sbjct: 181  IFGPENFYVEVMDHGIDIERRTHQQVLDIAKLMNAPLVATNDSHYVKRDDRKIQDALLCI 240

Query: 235  AHSTVVSQKDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
               + ++  DR +   D Y      EM S++S+LP A ++T+EIA RC            
Sbjct: 241  NSGSRINDPDRFKFDGDGYYIRPSEEMRSLWSELPGACDSTLEIAERCDVRFTTTKEGAN 300

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
               E    D  +++ +    +   GL  R   G           R++  +E +VI  M F
Sbjct: 301  YMPEFPVPD-GEDKTSWFVKEVERGLRDRFPNG------IPDAVRKQAQYEEDVIISMGF 353

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFL VAD+I WAK   I VGPGRGSGAGS+ AYA+ IT+++PL   L+FERFLNP+R+
Sbjct: 354  PGYFLTVADYINWAKSQGIRVGPGRGSGAGSMVAYAMKITELNPLEHGLIFERFLNPERI 413

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPDFD+DF + RRDEVI YV+ KYG +R++Q++T+G+++ K AL+D  R L   +   +
Sbjct: 414  SMPDFDVDFDERRRDEVIAYVKRKYGEDRISQVVTYGTIKTKQALKDSARILGKDFKVGE 473

Query: 474  RLCKL-IPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRH 524
            +L K   P      +S+  I D+          FR+    +P    +++ +  LEGL R 
Sbjct: 474  QLTKALPPAIMGKDISVHGIFDEKDKRYAEAAEFRKFYEENPDTHEVVDYALGLEGLTRQ 533

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HA  +++    L+ ++P+ +  +    +TQF+    E  GL+K DFLGL+ LT++  
Sbjct: 534  WGVHACAVIMSSHTLTDIIPIMKRPQDGAIITQFDYPTCETLGLLKMDFLGLRNLTVVSD 593

Query: 585  SLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +L+ +A       DL  + FDD +TY LL    TLG+FQL+  GMR  L+ M+PD  EDI
Sbjct: 594  ALENIAINGKPDPDLDHLSFDDKKTYELLGRGETLGVFQLDGGGMRDLLKLMKPDNFEDI 653

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQVMQ 697
             A+ +LYRPGP+  ++   Y  RKNG+++I  IHP +   L+     T G+I+YQEQVMQ
Sbjct: 654  SAVGALYRPGPMGANSHTNYALRKNGRQEITPIHPELAEPLEEILGTTFGLIVYQEQVMQ 713

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IAQ L+GY+L +AD+LR+AMGKK KE +D+Q + F  G   NG S+     +++++  F+
Sbjct: 714  IAQKLAGYTLGQADILRKAMGKKKKEVLDQQFKGFRQGMIDNGYSEESIKALWDVVVPFS 773

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             Y FNK+H+AAY ++SY TA++K +YP E++AA +T   DN ++   +  + R  +I ++
Sbjct: 774  AYAFNKAHSAAYGLVSYWTAFLKANYPTEYMAALLTSTKDNKDRRALYLAECRHMDITVL 833

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876
            PP VN    +F      I + L AI+ VG      I+   A+   F S +DF  +V    
Sbjct: 834  PPDVNASMGNFAPDGEAIRFGLNAIQNVGGPVVDAIVGTRAEKGRFASFQDFLDKVPQVV 893

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             N+R ++SL+ AGA D  G++R  LL   D        V++N      ++F       S 
Sbjct: 894  CNKRTIQSLIRAGAFDSMGHTRRALLARCDEAVDAIIDVKRNEAIGQFDLFGALDEGSSS 953

Query: 937  ----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VAT 989
                 + +      +   +   E+ +LG Y S HPL   +  L +       +       
Sbjct: 954  GTGLAVDIPDLPEFDRKTKLAAEREMLGLYVSDHPLRGVEAALARHQDYEIAQVVGSEGA 1013

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +    +++A +V     K T++G+     T  + +   +  FFP
Sbjct: 1014 MADRIVKIAGLVSGVTTKVTKQGNAWAIATIEDLSGSVDVLFFP 1057


>gi|221632747|ref|YP_002521969.1| DNA polymerase III subunit alpha [Thermomicrobium roseum DSM 5159]
 gi|221155959|gb|ACM05086.1| DNA polymerase III alpha subunit [Thermomicrobium roseum DSM 5159]
          Length = 1166

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1053 (35%), Positives = 568/1053 (53%), Gaps = 49/1053 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   + HL +H+ +SLL+G   +   + +        +AI+D   L+  +++ +   A
Sbjct: 1    MARP--YAHLHLHTEFSLLDGLGRIPEYVGRARELGMEHLAISDHGVLYGIIDWYKAVRA 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+ PIIG +  +  +              T+  ++LL     GY+ L++L +R  L + 
Sbjct: 59   EGLHPIIGMEAYLAPRSVQDRDK-------TIYHLLLLAENERGYKNLLKLATRASL-EG 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 RI ++ L E   EGLI  +    GPI       + + A +  +  ++LFG DR Y
Sbjct: 111  FYYKPRIDMAMLAE-HAEGLIATSACLGGPIANNLLNGNHEAAREWGIRLRELFGPDRFY 169

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQ H   ++ R  S++V LA   +LPLV TN+  +L +ED    D+L+ +  ++ +  
Sbjct: 170  IELQDHGLPEQRRVNSELVALARELDLPLVVTNDVHYLRQEDASVQDLLICIQTNSTLDD 229

Query: 243  KDRPRVTPDHYLKN--RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              R RV  D               +++PEAL NTV IA RC   L+     LP       
Sbjct: 230  PKRMRVQSDQLYFKSAEEMWRLFGAEVPEALLNTVRIAERCEVELEFGRLHLPDPGIPAG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                   ++ L      G+  R  +         ++ R+RL++EL+VI +  FS Y LIV
Sbjct: 290  M----TADDYLAALCWEGIRQRYPE-------LTEEVRRRLEYELDVIRQTGFSSYMLIV 338

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DF ++A++  I  G  RGS A S+  YAL ITD+DPL   L+FERFLNP+R  MPD D+
Sbjct: 339  RDFAEFARQRGILYG-VRGSAAASIVLYALGITDVDPLANRLVFERFLNPERREMPDIDM 397

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  DRR EVI YV  KYG E VAQIITFG++ AKAA+RDVGRA+  P+++VDR+ +LIP
Sbjct: 398  DFADDRRHEVIEYVARKYGAEHVAQIITFGTMGAKAAIRDVGRAMGWPHAEVDRIARLIP 457

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +     +  +A+ +    R     DP    L++ ++KLEG+ RHA THAAG+VI   PL 
Sbjct: 458  SGVNMTLE-RALEESPELRHLYETDPRSRELIDNARKLEGIARHAGTHAAGVVISASPLV 516

Query: 541  QLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKV 596
            + VP+ R  R++    P TQF M+ + + GL+K DFLGL  LT+L  +++ + + RG  +
Sbjct: 517  EHVPLQRPARAEEGALPTTQFPMETVAEIGLLKMDFLGLANLTILANAVELIRETRGETI 576

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL  IP DD +T+ LL    T G+FQLES+GMR+ +  ++P  + ++ A+++LYRPGP+ 
Sbjct: 577  DLKQIPMDDRKTFELLAEGQTFGVFQLESAGMRRYIRELRPTSVAELAAMIALYRPGPMQ 636

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +I  Y   K+G E I   HP +  +L ET GVI+YQ+QV+ IA+  +GY+L EAD++R+A
Sbjct: 637  HIPRYCRAKHGLEPIQYPHPDLAEILDETYGVIVYQDQVLLIARKFAGYTLGEADIMRKA 696

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKKI E+M  ++ERFI+GA   G S+  A  IF L+  FA Y FNK+HA  YAV+SYQT
Sbjct: 697  MGKKIPEKMRAERERFIAGAIAKGYSEEDAERIFNLIEPFAGYAFNKAHATCYAVVSYQT 756

Query: 777  AWMKTHYPVEFLAASMTLEMDNV----EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            A++K +YPVE++ A +     +     ++I     + ++  I ++PP +N     F V  
Sbjct: 757  AYLKANYPVEYMTAILRNAPSHPSGTVKRIAAALAECQKLGISVLPPDINHSEATFTVEQ 816

Query: 833  -----NRIYYSLAAIKGVGTTTARHIMEASADKP---FDSLEDFCSRVDSKKLNRRVLES 884
                   I + LA +K VG      I+ A  ++P   F S E FC  +D   +NRR +ES
Sbjct: 817  LPDGSRAIRFGLAMVKHVGEAAVEAILAARNEQPGKVFRSFEHFCETIDWSVVNRRAVES 876

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL--EK 942
            L+  GALDCFG  R  LL  LD   + AQ  +K       ++F+      +  +      
Sbjct: 877  LIKCGALDCFG-DRKILLAQLDQAIQAAQARQKALRRGQMDLFSAVGHDQAAPLRFSRPD 935

Query: 943  FSVENSSVR--FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                +   R     E+ +LG Y S HPLD +  + R  G+    E      G  + L A+
Sbjct: 936  IEPPDIPTRTLLGWERELLGVYLSAHPLDEFVLLGRLRGLVQIAELDDESVGQTVELLAL 995

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +   ++  TR G  +  +   + +   EA  FP
Sbjct: 996  ISGVRKLTTRTGRVMAVLQLEDRSGTIEAVVFP 1028


>gi|260060780|ref|YP_003193860.1| DNA polymerase III subunit alpha [Robiginitalea biformata HTCC2501]
 gi|88784910|gb|EAR16079.1| DNA polymerase III, alpha subunit [Robiginitalea biformata HTCC2501]
          Length = 1453

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/1078 (32%), Positives = 545/1078 (50%), Gaps = 71/1078 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            F HL  HS +S+L+  + + +++   A  + PA+A+TD  N+  A  F ++  A      
Sbjct: 260  FAHLHNHSQFSVLQSTMGIKDLVAAAAEYRMPAVALTDHANMMGAFHFVREVKAHNSNLT 319

Query: 67   ----------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
                      + PIIGC+  +    N       K+       +V+L    +GY  L ++ 
Sbjct: 320  EEDRASGKRDLIPIIGCEFFVCEDRN------NKSVKDYGYQVVMLAKNKKGYHNLAKMS 373

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S  Y  +      RI    ++    E +I+LTG   G +         + AE+ LL +K+
Sbjct: 374  SIAYT-EGFYYVPRIDREVVERY-KEDVIVLTGNLYGEVPSKVLNQGEKQAEEALLWWKE 431

Query: 177  LFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             FG+ LYV + RH   D  R +Q +V LA  HE+ LVATNN+ +  +ED EAHD+L+ V 
Sbjct: 432  QFGEDLYVEVMRHGQEDEDRANQSLVALAKKHEVSLVATNNTYYRRKEDAEAHDILLCVK 491

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL--- 292
                 +            L N+        ++ E   +  E  +    I++   P     
Sbjct: 492  EGEKQATPIGRGRGYRFGLPNQEYYFKSPEEMKELFRDLPESIQSIEGIIEKIEPFDLAR 551

Query: 293  ------------PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
                         R  E   D  ++ E   LR+    G E          G   +  R+R
Sbjct: 552  DVLLPKFEIPEEFRVAEDAADGGKRGENAYLRHITFQGAEK-------RYGEITEAIRER 604

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            LDFEL+ I    + GYFLIV DFI+ A+   + VGPGRGS AGSV AY L IT+IDPL++
Sbjct: 605  LDFELSTIENSGYPGYFLIVEDFIREARNMGVSVGPGRGSAAGSVVAYCLGITNIDPLKY 664

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNPDR+SMPD DIDF  + R  V+ YV +KYG  +VAQIIT+G++ AK+++RD
Sbjct: 665  DLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIDKYGANQVAQIITYGTMAAKSSIRD 724

Query: 461  VGRALQMPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPS 507
              R L +P S+ DR+ KLIPN             +         +A  +           
Sbjct: 725  TARVLDLPLSEADRIAKLIPNMSKLAKIFGQDEAELKKKFRSDDLAKVNELLNLSEGSDL 784

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
              + + +++ LEG  R+   HA G++I    ++  VP+     SDL VTQF+   +E AG
Sbjct: 785  EAQTVNMARVLEGSLRNTGIHACGVIITPDDITNFVPVATAKDSDLYVTQFDNSVVENAG 844

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL-IPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGLKTLTL++ ++  +  R     +    P DD ETY L     T+GIFQ ES 
Sbjct: 845  LLKMDFLGLKTLTLIKDTVKIVKARHGIDLIPDDFPLDDAETYELFQRGETVGIFQYESP 904

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
            GM++ L+ ++P   +D+IA+ +LYRPGP++ I  +  RK+G+E+I    P ++  L+ET 
Sbjct: 905  GMQKHLKDLKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGQEEITYDLPEMEEYLQETY 964

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+ +YQEQVM ++Q L+G+S  EADVLR+AMGKKI   + K K +F+ G   NG  + + 
Sbjct: 965  GITVYQEQVMLLSQKLAGFSKGEADVLRKAMGKKIFALLQKLKPKFLDGGEANGHPRDVL 1024

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA ++  M++++++  F 
Sbjct: 1025 EKIWKDWEAFASYAFNKSHSTCYAYIAYQTAYLKAHYPAEYMAAVLSNNMNDIKQVTFFM 1084

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDS 864
            ++ R+  + ++ P VN     F V  DN++ + + AIKGVG +    I+E    + P+ S
Sbjct: 1085 EECRRMGLDVLGPDVNESYYKFAVNKDNQVRFGMGAIKGVGRSAVETIVENRKANGPYQS 1144

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDNIQKYAQWVE 916
            + D   R+D +  N++  E+L  AG  D  G   R Q           L+ + ++    +
Sbjct: 1145 IFDLAKRIDLRAANKKAFENLALAGGFDSLGNAHRAQYFDCGTDGVSFLEKVIRFGARFQ 1204

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
            ++  +   ++F         +  +       +    + E+ V+G Y SGHPLD +K  ++
Sbjct: 1205 ESENSSQVSLFGGSSEVQIAEPEIPPCEEWGTMETLKREKEVVGIYISGHPLDDFKTEIQ 1264

Query: 977  KMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                                + LA ++   Q + ++ G      T  + +  +E   F
Sbjct: 1265 AFCNTEIYALNDLSPYLNRELSLAGVITDVQHRVSKNGKGWAIFTLEDYSDAFEFKIF 1322


>gi|167569335|ref|ZP_02362209.1| DNA polymerase III subunit alpha [Burkholderia oklahomensis C6786]
          Length = 1174

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1044 (39%), Positives = 601/1044 (57%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F ++A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL+    EGL+ L+G   G I  A    +   A +    + K F    Y+
Sbjct: 110  YRGRAELDASWLEGEFAEGLLALSGAQQGDIGLALAAGNEAAARRHAERWAKTFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q V +A   +LP+VAT+   F++ +D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQFMTADDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T D + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LP F   +   
Sbjct: 230  RRQKRFTTDQFFRTQDDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GLE    +L      +      Y QRLDFE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSKEGLEKRLVQLYPDEAEREAQRDTYCQRLDFECGTIKKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++   +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPASFQMLKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+      ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVEYPDMRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG++   A  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAKHRELFREGAAKNGLTAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D     + ++ P +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLSPDINQSHYRFEPVAEAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ A
Sbjct: 826  GKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GALD    +R QLL S+    + A+    N       +F    G  + +  L      + 
Sbjct: 886  GALDSLHANRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGEPAHQHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + + 
Sbjct: 943  KRRLQEEKSALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MVIALLDDGTGQCEITVF 1022


>gi|152980633|ref|YP_001352224.1| DNA polymerase III alpha subunit [Janthinobacterium sp. Marseille]
 gi|151280710|gb|ABR89120.1| DNA polymerase III alpha subunit [Janthinobacterium sp. Marseille]
          Length = 1152

 Score =  736 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/1044 (38%), Positives = 601/1044 (57%), Gaps = 39/1044 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            SP F+HL++HS YS+++G + +++++   AAD QPA+AI+D  NLF  ++F ++A + GI
Sbjct: 3    SPQFIHLRLHSEYSIVDGLIRIDDVIQAAAADMQPALAISDLANLFGMVKFYKEARSNGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+GC + I   ++                ++LLV   +GY +L EL+S+ +L +  + 
Sbjct: 63   KPIVGCDVWISNDNDRDKP----------SRLLLLVKNKDGYLQLCELLSKAWLTNLHRG 112

Query: 128  SVRICLSWLQEIGTEG---LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
               I   WL+++  +G   LI+L+G   G +  A    +   AE+    + +LF    Y+
Sbjct: 113  RAEIRPEWLEQVAADGKNGLIVLSGAHFGDVGIAIDNGNLGAAERCAQRWAELFPGHFYI 172

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR    +      Q   LA    LPLVAT+   FL  E++ AH+    ++   +++  
Sbjct: 173  EVQRAGQPNMDGHVRQASVLAAKLGLPLVATHPVQFLGLEEFTAHEARTCISEGEILANP 232

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R       K ++EM  +F+D+P AL+N+VEIA+RC+ +L++  P LP F   +   
Sbjct: 233  RRIKRFNEQQRFKTQAEMAELFADMPNALQNSVEIAKRCNLVLELGKPKLPNFPTPDGSS 292

Query: 303  IQKEEENELRNKAVAG---LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            I    +  L  +A  G       L     A+  H + Y+ RL FE + I +M F GYFLI
Sbjct: 293  I----DEFLVKEAQRGLDQRMEHLYPDPAAREKHRERYQARLKFETDTIIKMGFPGYFLI 348

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD
Sbjct: 349  VADFIKWAKNNGVPVGPGRGSGAGSLVAYSLLITDLDPLQYNLLFERFLNPERVSMPDFD 408

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ+ RD VI+YV+++YG + V+QI TFG++ AK A+RDVGR L   Y+  D + KLI
Sbjct: 409  IDFCQEGRDRVIQYVKDQYGKDAVSQIATFGTMAAKGAVRDVGRVLDFGYNFCDGISKLI 468

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   I ++    E    +  V +LL+++Q++EG+ R+   HA G++I    
Sbjct: 469  PFKPGKLVTISDAIKEEPLLAERLENEEEVKQLLDLAQQVEGIARNIGMHAGGVLIAPGK 528

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L +++ ++         
Sbjct: 529  LTDFCPLYTQGGDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIKDLDPAMAD 588

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L  +P +D  +Y LLT   T+ +FQLES GM+  L+  +PD  EDIIALV+LYRPGP+
Sbjct: 589  FALEKLPLNDRPSYELLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPM 648

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G E+     P  + +L ET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 649  DLIPDFCRRKHG-ERFEYPDPRTESILSETYGIMVYQEQVMQMAQVIGGYSLGGADLLRR 707

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM + +E F +GASKN +S   A  IF+L+ KFA YGFNKSHAAAYA++SY 
Sbjct: 708  AMGKKKAEEMAEHRELFRAGASKNDLSAEKADEIFDLMEKFAGYGFNKSHAAAYALLSYH 767

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-IQIMPPSVNTPCVDFKVGD-- 832
            TA++K H+P  F+AA+++L MD+ +KIK   +DA     + ++PP +N     F      
Sbjct: 768  TAYLKAHHPAAFMAANLSLAMDDTDKIKILVEDAIDICGLSLLPPDINQSDYRFTPVGVP 827

Query: 833  ----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                 +I Y L A+KG G      ++EA  ++PF  L DF  RVD +++NRR ++SL+ A
Sbjct: 828  GKKATQIRYGLGAVKGSGKGAIDAVIEARKERPFTDLFDFAKRVDKRQINRRTIDSLIRA 887

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA DCF   R  LL S+          +        ++F  +           K S  + 
Sbjct: 888  GAFDCFDVDRAILLASV--AFAMECAEQAEAAANQVSLFGGDDSDLETPPEYVKVSPWSD 945

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              +   E+  LGFY SGH  + Y    R+           +       +A ++   + + 
Sbjct: 946  KQKLTEEKAALGFYLSGHLFNAYADEARRFARAKLSSLEPSREPR--TIAGVISGLRTQM 1003

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G RI  VT  + +   +   +
Sbjct: 1004 TQRG-RITIVTLDDGSATVDVTVY 1026


>gi|86141808|ref|ZP_01060332.1| DNA polymerase III, alpha subunit [Leeuwenhoekiella blandensis
            MED217]
 gi|85831371|gb|EAQ49827.1| DNA polymerase III, alpha subunit [Leeuwenhoekiella blandensis
            MED217]
          Length = 1460

 Score =  736 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/1085 (31%), Positives = 541/1085 (49%), Gaps = 77/1085 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-------A 62
             FVHL  HS +S+L+   S+++++      + PA+ ITD  N+  A  F +        A
Sbjct: 260  DFVHLHNHSQFSILQSTASVHDLVAAAKKHKMPAVGITDMGNMMGAFHFVKALTAHNKAA 319

Query: 63   CAAG--------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                              I+PI+G +L++         +  K+       IV L     G
Sbjct: 320  QKKNDELLEAGEEPTETIIKPIVGAELNVC------QDHTNKSQKDNGYQIVFLAKNKRG 373

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
            Y  L ++ S  Y  D      RI    ++    E +I+LTG   G +         + AE
Sbjct: 374  YHNLAKMASLAYT-DGFYYVPRIDRKIVERY-KEDIIVLTGNLYGEVPSKVLNVGEKQAE 431

Query: 169  KRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            + LL +K+ FGD LY+ + RH   D  R    +++ +  H++ LVATNN+ ++ +ED  A
Sbjct: 432  EALLWWKETFGDDLYIEVMRHGQEDEDRVNQTLIEFSKKHDVKLVATNNTFYIDKEDAPA 491

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ- 286
            HD+L+ V     V+            L N         ++     +  E       I+  
Sbjct: 492  HDILLCVKDGEKVATPKGRGRGYRFGLDNEEYYFKSADEMKALFTDLPEAISNVDEIVDK 551

Query: 287  --------------VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
                             P   +F E + D  ++ E   L++    G   R  +       
Sbjct: 552  VEAFVLARDVLLPAFTIPEEFQFEEDKQDGGKRGENKYLKHITFEGARQRYPE------- 604

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
               D  +RL+FEL+VI    + GYFLIV DFI+ A+   + VGPGRGS AGS  AY L I
Sbjct: 605  ITPDIEERLNFELSVIENTGYPGYFLIVEDFIREARNMGVSVGPGRGSAAGSAVAYCLGI 664

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T+IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV +KYG  +VAQIIT+G++
Sbjct: 665  TNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIDKYGANQVAQIITYGTM 724

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFR 499
             AK+++RD  R L +P S  DR+ KLIPN             D       + +   +   
Sbjct: 725  AAKSSIRDTARVLDLPLSDADRIAKLIPNMSKLAKIFGQSEADLKKKFRSEDLVKVNELL 784

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
                 D    + L  +++LEG  R+   HA G++I    ++  VP+     SDL VTQF+
Sbjct: 785  NLAEGDDLEGQTLRQARQLEGSVRNTGIHACGVIITPDDITNFVPVSIAKDSDLYVTQFD 844

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTL 618
               +E+AGL+K DFLGLKTLTL++ ++  +  +     D    P DD +TY L     T+
Sbjct: 845  NSVVEEAGLLKMDFLGLKTLTLIKDTVKLVKHKHGIDLDPDSFPLDDQKTYELFQRGDTV 904

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            GIFQ ES GM++ ++ ++P   ED+IA+ +LYRPGP++ I  +  RK+G+E+I    P +
Sbjct: 905  GIFQYESPGMQKHMQALKPTVFEDLIAMNALYRPGPMEYIPSFIARKHGEEEIQYDLPAM 964

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +  L+ET G+ +YQEQVM ++Q L+G+S  +ADVLR+AMGKKI   ++K K +F+ G  K
Sbjct: 965  EEYLEETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKIFALLEKLKPQFLDGGEK 1024

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NG  + I   I++    FA Y FNKSH+  YA I+YQTA+ K HYP E++AA ++  M++
Sbjct: 1025 NGHDRKILEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYCKAHYPAEYMAAVLSNNMND 1084

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEAS 857
            ++++  F ++ ++  ++++ P VN     F V D   + + + A+KGVG    + I+E  
Sbjct: 1085 IKQVTFFMEECKRMGLEVLGPDVNESFRKFTVNDRGAVRFGMGAVKGVGANAVKTIVENR 1144

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQ 909
             D P+ S+ D   R+D +  N++  ESL  AG  D F    R Q  +        L+   
Sbjct: 1145 EDGPYRSVFDLAKRIDLRAANKKAFESLALAGGFDSFMATHRAQYFKDEGDGITFLEKAV 1204

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            KY    ++N  +   ++F         +  +       +  +   E+ V+G Y SGHPLD
Sbjct: 1205 KYGAKFQENENSAQVSLFGEASEVQIPEPVVPPCEEWGTMEKLRREKEVVGIYISGHPLD 1264

Query: 970  VYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             +K  +         +   +       + +  ++   Q + ++ G      T  +  + +
Sbjct: 1265 DFKLEMDNFCNGKISDFNNLEMHLNRELTIGGVISDVQHRVSKNGKGWAAFTVEDFDESF 1324

Query: 1028 EANFF 1032
            E   F
Sbjct: 1325 EFRMF 1329


>gi|295112106|emb|CBL28856.1| DNA-directed DNA polymerase III (polc) [Synergistetes bacterium SGP1]
          Length = 1154

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1049 (35%), Positives = 589/1049 (56%), Gaps = 40/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   FVHL VH+ YSLL+GA+    +  K+A    PA+A+TD   ++ A+EF +   A
Sbjct: 1    MTRP--FVHLHVHTEYSLLDGAIRTKQLAAKVADWSVPAVAMTDHGVMYGAVEFYENCRA 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PI+GC++ +D   +     +GK        ++LL    EGY+ L++LVS     D 
Sbjct: 59   AGVKPILGCEIYVDPDGHRSREKKGKNN-----HLILLAENEEGYRNLVKLVSIANT-DG 112

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 RI    L      G+I  +   +G + +         A KR L ++ + G    +
Sbjct: 113  FYYKPRIDHDLLASCAR-GIIASSACLAGEVPQLVLQGREDEAAKRALLYQDIMGKGNYF 171

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-S 241
            + +  +   ++      ++++A    +PL+AT+++ +L+ EDYE H +L+ +        
Sbjct: 172  LEIMSNTLPEQAVVNKALIRIAKDTGIPLIATSDAHYLNAEDYEWHKILLRINTHADDTD 231

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                  V   +            +++PEAL+NTV IA RC   +++          +  +
Sbjct: 232  DAFGFSVNDFYLRSPEEMDAIFGAEVPEALDNTVAIAERCGVEMKLKTGHYMLPSLELQE 291

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             +    ++ L ++A AGL +RL            +Y +RL++ELNVI RM FS YFLIVA
Sbjct: 292  GM--TLDSHLEDEARAGLRMRLNADTP-----PAEYAERLEYELNVITRMGFSAYFLIVA 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
              IQ AK+  IP+GPGRGS AGS+ A++L IT++DPL+++LLFERFLNP+R+SMPD D D
Sbjct: 345  GIIQAAKERGIPIGPGRGSAAGSLVAWSLRITELDPLKYNLLFERFLNPERISMPDIDTD 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
                 R+++++++  +YG +RV+QIITFG ++++ A++DVGRA+ M Y+ +DR+ KLIP 
Sbjct: 405  VSDRGREQLLKHIVERYGSDRVSQIITFGRMKSRQAVKDVGRAVGMEYALMDRVAKLIPA 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            D       +A+       E    DP +  +L  ++ +EGL RHAS HAAG+VI   P++ 
Sbjct: 465  DARS--IREALERTPELTELAEEDPRIKNVLRTAEHIEGLARHASQHAAGVVITPVPITD 522

Query: 542  LVPMYRDVRS-----------DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            LVP+ R   +              VTQF M+ +EK GL+K DFLGL+TL++L+++++ + 
Sbjct: 523  LVPIRRIKSTAPSAPDGELDVTQTVTQFTMEPVEKLGLVKMDFLGLQTLSILEEAVENIR 582

Query: 591  QR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                   DL  +P DD  TY LL    T+G+FQLES G+R  L  ++ DC +D++A +++
Sbjct: 583  LNGKNPPDLLSLPMDDPATYKLLQEADTMGVFQLESDGIRGMLRKLRIDCFDDLVAALAM 642

Query: 650  YRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            YRPGP+D+ +V  Y   K+G+ K+   HPL++ +LK+T GVI+YQEQVMQ A +L+GY+L
Sbjct: 643  YRPGPLDSGMVDQYIKCKHGQAKLEYPHPLLEDVLKDTYGVILYQEQVMQSASVLAGYTL 702

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             EAD+LRRAMGKK  E M +Q+ +F+ GA + GI +  A  IF+L+ KFA YGFNKSH+A
Sbjct: 703  GEADLLRRAMGKKKVEVMQEQRAKFLDGARQKGIDEKTASGIFDLIEKFAGYGFNKSHSA 762

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMD-NVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AYA++SYQTA++K +Y  EF+A+ ++ +M    + +  + ++ RQ  I ++PP VN+   
Sbjct: 763  AYALVSYQTAYLKANYKAEFMASYLSSQMKSKKDVLGHYVREVRQSGISVLPPDVNSSME 822

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             F    + I + L A+  VG      I++A  + PF SL DF  RVD   +NR ++E+L+
Sbjct: 823  SFTAVGDVIRFGLGAVLRVGHNAVEAIVKAREEGPFKSLWDFLRRVDLHDMNRAMIENLI 882

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFS 944
             AGA D    +R +L+ +L +    AQ +         ++F    +      +  L    
Sbjct: 883  KAGAFDEITPNRARLVAALPDFILAAQKMAAG--GDQLSLFDAIGDDSGSDPEPDLPDVE 940

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                  + + E+ V G Y SGHP D  +  +RK       +          ++  +++S 
Sbjct: 941  EYGIYDKLDYEKEVTGLYISGHPFDSCEAQVRKYANCSIADLPLWRGKTAPKVGGLILSV 1000

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +K T+KG  +G +   +         FP
Sbjct: 1001 SEKTTKKGDLMGVLLLEDSESSVSMVAFP 1029


>gi|256819216|ref|YP_003140495.1| DNA polymerase III, alpha subunit [Capnocytophaga ochracea DSM 7271]
 gi|256580799|gb|ACU91934.1| DNA polymerase III, alpha subunit [Capnocytophaga ochracea DSM 7271]
          Length = 1485

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/1085 (30%), Positives = 545/1085 (50%), Gaps = 78/1085 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--------- 61
            F HL  H+ +S+L+   S+ +++   A ++ PA+A+TD+ N+ +A  F Q          
Sbjct: 255  FAHLHNHTQHSILQSTTSIKDLVKITAKEKMPAVALTDSGNMMAAFHFVQAVQAHNKEAE 314

Query: 62   -----ACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
                 A   G       I+PIIGC+ +I         +  ++       +V+L    +GY
Sbjct: 315  AKNKEAEEKGETPTETLIKPIIGCEFNIC------ENHLDRSRQDNGYQVVILAKNKQGY 368

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L ++ S            RI    +++  ++ LI+L+GG +G +        ++ AE+
Sbjct: 369  HNLTKMASIASTKG-FYYVPRIDKVIVEQYKSD-LIVLSGGMNGEVPSKILNIGTKQAEE 426

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             LL +K+ FG+  Y+ + RH   D  R    +V+ +  + + L+ATNN+ +L ++D  AH
Sbjct: 427  ALLWWKEQFGEDFYLEVMRHNQEDENRVNETLVEFSKKYGVKLIATNNTFYLHKKDANAH 486

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            D+L+ V                   + N        +++    ++  E       I+   
Sbjct: 487  DILLCVKDGEKQKTPIGRGRGYRFGMPNNEYYFKTSAEMKALFKDIPEAILNIQEIIDKV 546

Query: 289  API-------------LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
             P                 F  +E    +K E N LR+    G + +  +          
Sbjct: 547  EPYGLARDILLPKFDIPEEFQVEEDPTGKKGENNYLRHLTYEGAKRKYPE-------ITD 599

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
            + R+RLDFEL++I +  + GYFLIV DFI  A++ N+ VGPGRGS AGS  A+ L IT++
Sbjct: 600  EVRERLDFELSIIEKTGYPGYFLIVQDFIAAARRMNVSVGPGRGSAAGSAVAFCLDITNM 659

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DP+++ LLFERFLNPDR+SMPD DIDF    R +VI YV +KYG  +VA+IIT+G + AK
Sbjct: 660  DPIKYDLLFERFLNPDRVSMPDIDIDFEDSGRQDVINYVIDKYGESQVARIITYGKMAAK 719

Query: 456  AALRDVGRALQMPYSQVDRLCKL----------IPNDPAHPVSLQAIADD----SRFREA 501
            +A++D  R L +P  + +RL  L          +       +  +  +++       +  
Sbjct: 720  SAIKDTARVLDVPLQESNRLAGLVPNGVSSLGKMFGWDDKTLKEKVRSEELPKVDELKRL 779

Query: 502  --RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
                 +    + ++ +  +EG  R+   HA G++I    ++  VP+     SDL VTQF+
Sbjct: 780  LAGEGEEESTQTIQQANIIEGSVRNTGIHACGVIITPDDITNFVPVALAKDSDLFVTQFD 839

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTL 618
               +E AGL+K DFLGL TLTL++ +++ + Q      D    P DD +TY L     T+
Sbjct: 840  NSVVESAGLLKMDFLGLSTLTLIKDTIENIKQTHNIELDAEAFPLDDKKTYELFQRGETV 899

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            GIFQ ES+GM++ +  ++P    D+IA+ +LYRPGP++ I  +  RK+G E I    P +
Sbjct: 900  GIFQYESTGMQKYMRELKPTVFADLIAMNALYRPGPLEYIPSFIKRKHGIESIEYDLPDM 959

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +  LKET G+ +YQEQVM ++Q L+G++  EADVLR+AMGKK    + K K +FI+ AS+
Sbjct: 960  EEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQIAVLAKMKPKFITQASE 1019

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             G        I+    KFA Y FNKSH+  YA + YQTA++K +YP E++AA ++  M++
Sbjct: 1020 KGHDAQKLEKIWADWEKFAAYAFNKSHSTCYAWVGYQTAYLKANYPAEYMAAVLSNNMND 1079

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS 857
            ++ I  F ++  +  ++++PP VN     F V  +  I + + A+KGVG      I+E  
Sbjct: 1080 IKTITFFLEECHRMGVKVLPPDVNESLYKFTVNKNGDIRFGMGAVKGVGKAAVDTIVEQR 1139

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQ 909
             ++P+ S+ D   RVD K +N++  ES+  AG  D F    R Q   +       L+   
Sbjct: 1140 QERPYTSIFDLAKRVDYKSINKKAFESIALAGGFDSFTNVHRAQYFHAEADGIPFLEKAI 1199

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++    ++++ +   ++F  E      +  + K     +  +   E+ V+G Y SGHPLD
Sbjct: 1200 RFGTKYQESKNSAQMSLFGGESEVDIPEPAVPKCETWGNLEQLRREKEVVGIYISGHPLD 1259

Query: 970  VYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             +K  L+        E           + +A MV   Q +  + G   G+ T  +    Y
Sbjct: 1260 DFKHELQNFCNISLSELQDLQPFINRELTVAGMVADLQHRTAKNGKGYGFFTLEDYDGSY 1319

Query: 1028 EANFF 1032
            E   F
Sbjct: 1320 EFKLF 1324


>gi|257452286|ref|ZP_05617585.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
 gi|317058829|ref|ZP_07923314.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
 gi|313684505|gb|EFS21340.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
          Length = 1144

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1033 (35%), Positives = 588/1033 (56%), Gaps = 31/1033 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +H+ YSLL+G   + + + +  + +  AIAITD  N+F ALEF QKA   G++P
Sbjct: 3    DFVHLHLHTEYSLLDGVGKIEDYMKRAKSLRMKAIAITDHGNMFGALEFYQKAQKYGLKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ +                     ++LL    EGYQ L++L S  YL +      
Sbjct: 63   IIGMEIYLS-------EYPLAEKKGRNFHLILLAENYEGYQNLMKLSSLAYL-EGFYYKP 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ-VAEKRLLTFKKLFG-DRLYVNLQ 187
            R+    L++  ++G+I L+   +G I       + +   E  +L ++ +FG +  Y+ +Q
Sbjct: 115  RLDKELLKKY-SKGIIALSACMNGEIASYILEGAEESKIEATILEYQDIFGKENFYLEVQ 173

Query: 188  RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   ++      +        +PLVATN++ ++++ ++   DV++ +   + +S + R 
Sbjct: 174  AHEEIEQQKVNEALYTFGRKMNIPLVATNDTHYVNKGEHVLQDVIVCIQTGSHLSDEKRM 233

Query: 247  RVTPDHYL--KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            ++                +     EAL+N+VEIA+RC   + +H    P +   E     
Sbjct: 234  KIEMQDLYLKSYEEMYAVLGEQYQEALQNSVEIAKRCQLWIPMHEFQFPDYNLPEG---I 290

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               E  L+     GL  R  QG        +   +R+++EL++I +M ++GYF++V DFI
Sbjct: 291  SSLEEYLKKLTYEGLGKRYPQGLD------ERIIERVEYELSIINKMGYAGYFVVVWDFI 344

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+   IP+GPGRGS AGS+ AYAL IT +DPL + L+FERFLNP+R+SMPD DID CQ
Sbjct: 345  SFARSRKIPIGPGRGSAAGSLVAYALEITQLDPLEYHLIFERFLNPERISMPDIDIDICQ 404

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR E+I YV  KYG ++VAQI TFG+L+A+AA+RDVGR + +  +++D+  K IP   +
Sbjct: 405  ERRQEIIDYVVQKYGQDKVAQIATFGTLKARAAIRDVGRVMDVELAKIDKAAKCIPMFAS 464

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 + + ++   +     D  +  ++  + ++E   RH STHAAG++I  + L++ VP
Sbjct: 465  ---LKEVLEENIELKTMYQQDVELKNVINTAMRIENKVRHISTHAAGVLITKKSLTESVP 521

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            +Y D ++ +  TQ+ MK +E+ GL+K DFLGL+TLT+LQ++ D++ +    K++LS IP 
Sbjct: 522  LYADSKNGIVSTQYQMKELEELGLLKIDFLGLRTLTILQRTQDYIEENTGKKIELSEIPL 581

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661
             D   Y +L+   + G+FQ+ES G+R  L+ +QP+   DI+AL+SLYRPGP+ + +   +
Sbjct: 582  QDKTVYEMLSKGDSFGVFQMESKGLRSILKRLQPNSFGDIVALLSLYRPGPLGSGMVDDF 641

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             +RK+GK+ I   HP ++ +LKET GVI+YQEQVM+IA +++ YSL EAD+LRRAMGKK 
Sbjct: 642  IDRKHGKKAIEYPHPSLEEVLKETYGVILYQEQVMKIANIMADYSLGEADLLRRAMGKKN 701

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E M + + +FI  + K G S+  A  IF+L+ KFA YGFNKSH+AAYA+I+Y TA+ K 
Sbjct: 702  VEIMHENRSKFIERSIKKGYSQEKAEEIFDLIDKFAGYGFNKSHSAAYALIAYWTAYCKV 761

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP  F AA ++ E+ +++KI  +  DA+   ++I  P V  P   F V  ++I ++L+A
Sbjct: 762  HYPKYFYAALLSSEISDIDKISFYFADAKAHGVEIETPDVQFPSSRFVVKGDKILFALSA 821

Query: 842  IKGVGTT-TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK VGT  + +   E      F S EDF  R+  + LN++ LE+ ++AGALD    +R +
Sbjct: 822  IKNVGTGISEKIKEEREKKGEFRSYEDFVERMKKEGLNKKGLEAFIYAGALDSLSGNRHE 881

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             ++SLD +  Y Q   K    +  N+F   K     + +L +    +  V  E E+  LG
Sbjct: 882  KIESLDKVLDYVQRKAKADDIQQMNLFGDSKKNLV-QFSLSRTEEYSMEVLLEKEKEFLG 940

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            FY S +PLD Y+ + +                  + L  ++ + ++ +T+KG  + +   
Sbjct: 941  FYVSANPLDQYESLYQSFDFDELNLIKEENMEREVWLYGIIQNLKKTRTKKGDAMAFADL 1000

Query: 1021 SEPAKEYEANFFP 1033
                 +     FP
Sbjct: 1001 ENYQGQIPMVIFP 1013


>gi|253996658|ref|YP_003048722.1| DNA polymerase III subunit alpha [Methylotenera mobilis JLW8]
 gi|253983337|gb|ACT48195.1| DNA polymerase III, alpha subunit [Methylotenera mobilis JLW8]
          Length = 1160

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 427/1039 (41%), Positives = 624/1039 (60%), Gaps = 32/1039 (3%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              SPSFVHL+ HS YS+++G + +++ + +  +D+ PA+A+TD +NLF A++F + A   
Sbjct: 9    PASPSFVHLRCHSEYSVVDGIVRIDDYVKQAVSDKMPALALTDLSNLFGAVKFYKAARGK 68

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G++PIIGC + ++  +N ++             ++LL  +  GY  L  L+SR YL +Q 
Sbjct: 69   GVKPIIGCDIWLENTENRELP----------SRLLLLCQSHTGYLTLCHLLSRAYLTNQY 118

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            +       +W  E GTEGL++L+GG +G + +A    +  +A+K    +++LF +R Y+ 
Sbjct: 119  RGRAEFKRAWFAEAGTEGLLLLSGGLAGDVGQACAQGNVVLAKKLANEWQQLFPERFYLE 178

Query: 186  LQR-----HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            +QR      +  +      V  +A+   LP+VAT+   F S +DY AH+    +A   V+
Sbjct: 179  VQRIATDAGKASEEMYIQHVRHIAHELSLPIVATHPIQFTSPDDYRAHEARTCIAEGYVL 238

Query: 241  SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            + K RP+  T + Y K ++++ ++F+D+PEAL N+VEIA+RC+  L +    LP+F    
Sbjct: 239  ADKRRPQNFTTEQYFKTQADIAALFADMPEALANSVEIAKRCNLSLTLGKNYLPQFPTPN 298

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             + +     +E R   +A     L      +      Y  RLDFE NVI +M F+GYFLI
Sbjct: 299  NESLNDYLISEAR-LGLAKRLEVLFPNEEVRASKQDVYAARLDFETNVINQMGFAGYFLI 357

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGSV AY+L ITD+DPL ++LLFERFLNPDR+SMPDFD
Sbjct: 358  VADFINWAKNNGVPVGPGRGSGAGSVVAYSLGITDLDPLEYNLLFERFLNPDRVSMPDFD 417

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ+ RD VI YV+ KYG + V+QI TFG++ AKA +RDVGR L +P++ VD + KLI
Sbjct: 418  IDFCQEGRDRVIDYVKQKYGIDAVSQIATFGTMAAKAVIRDVGRVLDLPFNFVDGIAKLI 477

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P +    +S  A+  + +  E R  +  V  LLE++ +LEGL R+   HA G++I    +
Sbjct: 478  PLELGITLS-DALEKEPQLAERRENEEEVKELLELALRLEGLVRNIGMHAGGVLISPSKI 536

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
            +   P+Y        V+Q++   +E  GL+KFDFLGL+TLT+L  +L+   ++  + +L 
Sbjct: 537  ADFSPVYCQPDGASLVSQYDKDDVEAVGLVKFDFLGLRTLTILDMALENANKQRAERELP 596

Query: 600  L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                  +P DD  T+ LL T  T  +FQLES GM+  L+   PDC EDIIALV+LYRPGP
Sbjct: 597  PLFFETLPIDDKPTFQLLKTANTTAVFQLESRGMKDMLKQAMPDCFEDIIALVALYRPGP 656

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  Y  RK+GK+++   HPL +P+LKET G+ +YQEQVMQIAQ+++GYSL  AD+LR
Sbjct: 657  MDLIPDYCRRKHGKQRVEYPHPLTEPILKETYGIAVYQEQVMQIAQVVAGYSLGGADLLR 716

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK KEEMD Q++ F  GA+KN +++  A ++F+LL KFA YGFNKSHAAAYA+++Y
Sbjct: 717  RAMGKKKKEEMDAQRKIFTEGATKNNMTEQQASDLFDLLEKFAGYGFNKSHAAAYALVAY 776

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDN 833
             TA++KTHYP  FLAA+M+ +M+N + +  F  D     ++++PP VN     FK V  N
Sbjct: 777  HTAYLKTHYPAAFLAATMSADMNNTDSVHIFYDDCAPNQVEVLPPDVNESEFKFKPVSKN 836

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            +I Y L A+KG G+     I++A   D PF SL DFCSR+D +K+NRRV+ESL+ AGA D
Sbjct: 837  QILYGLGAVKGTGSAAIDVILQARAKDGPFTSLFDFCSRLDLRKVNRRVIESLIRAGAFD 896

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                +R  LL  +      A+    N  +   ++F            L   +      R 
Sbjct: 897  KLEPNRHALLAGVALAISAAEQT--NANSNQNSLFGEASDQSVH--VLPNVTPWPEQQRL 952

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LGFYFSGHP   Y+  L +             +     LA +V   + + T +G
Sbjct: 953  QEEKIALGFYFSGHPYWSYQKDLSQFISTTLANL--APKEQPQLLAGIVSGVRVRMTARG 1010

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
              +  V   +     E   
Sbjct: 1011 K-MAIVGLDDGTTRIEVVV 1028


>gi|163753129|ref|ZP_02160253.1| DNA polymerase III, alpha subunit [Kordia algicida OT-1]
 gi|161326861|gb|EDP98186.1| DNA polymerase III, alpha subunit [Kordia algicida OT-1]
          Length = 1460

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1091 (32%), Positives = 556/1091 (50%), Gaps = 77/1091 (7%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF---- 58
            + L+ +P F HL  HS +S+L+   S+++++          +A+TD  N+  A  F    
Sbjct: 255  EALKNAP-FSHLHNHSQFSVLQSTSSISDLVKAAGKYNMQGVALTDHANMMGAFHFVKEV 313

Query: 59   --SQKACAAGI---------------QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
                K+  A I               +PIIGC+  +         ++ KT       IVL
Sbjct: 314  SNYNKSIKAKIAEAEATGEAIDAQILKPIIGCEFFVC------ENHEDKTRKDNGYQIVL 367

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
            L     GY  L ++ S  Y         RI  + +++   E +I+LTG   G +      
Sbjct: 368  LAKNKNGYHNLAKMSSIAYTKG-FYYVPRIDKNVIEQY-KEDVIVLTGNLYGEVPNKVLN 425

Query: 162  NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFL 220
                 AE+ LL +K+ F D LYV + RH   D  R    +V+LA  HE+ LVATNNS ++
Sbjct: 426  IGESQAEEALLWWKETFQDDLYVEIMRHNQEDENRVNEVLVRLAKKHEVKLVATNNSYYI 485

Query: 221  SEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALEN 273
            ++ED  AHDVL+ V      +                ++Y K+  EM ++F DLP+A+ +
Sbjct: 486  AQEDATAHDVLLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSPDEMKTLFKDLPDAILS 545

Query: 274  TVEIARRCSFI--------LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
              EI  +                 P   +F E + D  ++ E   LR+    G +     
Sbjct: 546  IQEIVDKVEPFELARDVLLPAFDIPEEFQFEEDKIDGGKRGENKYLRHLTYEGAKK---- 601

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                 G    +  +RLDFEL  I    + GYFLIV DFI+ A+  ++ VGPGRGS AGSV
Sbjct: 602  ---RYGEITPEIEERLDFELGTIENTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSV 658

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT+IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV +KYG  +VAQ
Sbjct: 659  VAYCLWITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVIDKYGANQVAQ 718

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN------------DPAHPVSLQAIA 493
            IIT+G++ AK+++RD  R L +P S+ DR+ KLIPN            +       + + 
Sbjct: 719  IITYGTMAAKSSIRDTARVLDLPLSEADRIAKLIPNTKLAKIFGKSEAELKQKFRSEEVL 778

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
              +        D      + +++ LEG  R+   HA G++I    +++ VP+     SD+
Sbjct: 779  LINELINISEEDGLAAETVNMARVLEGSVRNTGIHACGVIITPDDITKFVPVALAKDSDM 838

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLL 612
              TQF+   +E AGL+K DFLGLKTLTL++ ++  +  +  V +D+  IP DD ETY L 
Sbjct: 839  YCTQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKLVKYKHDVDIDIENIPLDDEETYALF 898

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
                T+G+FQ ES GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RK+G+E I 
Sbjct: 899  QRGETVGVFQYESPGMQKHMKSLKPTTFADLIAMNALYRPGPMEYIPSFIRRKHGEEDIE 958

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
                     L+ET G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK K  +DK K +F
Sbjct: 959  YDLDACQEYLEETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQKAVLDKMKPKF 1018

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            IS AS  G ++     I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA +
Sbjct: 1019 ISQASAKGHAEDKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVL 1078

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTAR 851
            +  M++++ I  F ++ ++  + ++ P VN     F V D   + + + AIKGVG    +
Sbjct: 1079 SNNMNDIKTITFFMEECKRMKLDVLGPDVNESFYKFTVNDEGAVRFGMGAIKGVGHGAVK 1138

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS------ 904
             I++  ++  + S+ D   R+D +  N++  E+L  AG  D FG   R Q   +      
Sbjct: 1139 TIVKERSEGKYKSVFDLAKRIDLRAANKKAFENLALAGGFDSFGDTHRAQYFHTENDGIT 1198

Query: 905  -LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L+   KY    ++N+ +   ++F        ++  +       +  +   E+ V+G Y 
Sbjct: 1199 FLEKAVKYGAKFQENKNSAQVSLFGEASEVQIEEPKVPPCEEWGTMEKLAREKEVVGIYI 1258

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            SGHPLD +K  ++                    I  A +V   Q + ++ G      T  
Sbjct: 1259 SGHPLDDFKAEMKFFCKGDLSYFSRMEEYVNREIPFAGVVTEVQHRVSKNGKGWALFTVE 1318

Query: 1022 EPAKEYEANFF 1032
            + ++ YE   F
Sbjct: 1319 DYSESYEFRIF 1329


>gi|304389308|ref|ZP_07371273.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii
            subsp. curtisii ATCC 35241]
 gi|304327426|gb|EFL94659.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii
            subsp. curtisii ATCC 35241]
          Length = 1225

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/1074 (32%), Positives = 555/1074 (51%), Gaps = 57/1074 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S  FVHL VH+ YS+L+GA  +  ++ K   +QQ A+AITD   LF A EF Q+   
Sbjct: 1    MPSS-EFVHLHVHTDYSILDGAAKIKRLVAKAVENQQKAVAITDHGYLFGAFEFYQECRN 59

Query: 65   AGIQPIIGCQLDIDMQD-------------NLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
            AGI+PIIG +  +                   +      +       + LL  T EG   
Sbjct: 60   AGIKPIIGLEAYVTPGTSRFDTTRVQWGTLEQQKAGDDVSARGAYTHMTLLSHTTEGMHN 119

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L  L S   L  Q  +  R     L+    EGLI   G  SG +         Q A +  
Sbjct: 120  LFRLGSYASLDGQMGKWPRADRELLERYH-EGLIGTAGCPSGEVQTRLRLGQYQEAVRAA 178

Query: 172  LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
               + +FG D  YV L  H    +      +++LA     P++ATN+S ++ +ED E  D
Sbjct: 179  GELQDIFGKDYFYVELMDHGLSIENRVRKDLLRLAREINAPIIATNDSHYVYKEDREIQD 238

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             ++ +     +S  DR R     Y      EM  +F+++PEAL+NT+ IA +C+      
Sbjct: 239  AMLCINSGDRLSNPDRFRFDGTDYYLRPSEEMHELFAEIPEALDNTLLIAEQCNVEFPDV 298

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                   +        ++E +    +   GL+ R   G       +++ R+R D+E+ +I
Sbjct: 299  KEGTFMPVFPV--PAGEDEVSWFIKEVERGLQYRFPNG------ISEEVRKRADYEVEII 350

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F  YFLIV+D+IQWAK N I VGPGRGSGAGS+ AYA+ ITD+DP++  LLFERFL
Sbjct: 351  VQMGFPSYFLIVSDYIQWAKDNGIRVGPGRGSGAGSMVAYAMRITDLDPIKHGLLFERFL 410

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D+DF   RR +VI YV  KYG ++V+Q++T+G++++K AL+D  R     
Sbjct: 411  NPERVSMPDIDVDFDDRRRQDVIDYVTRKYGKDKVSQVVTYGTIKSKQALKDAARISGAD 470

Query: 469  YSQVDRLCKLIPN-DPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLE 519
            +S+ ++L K +P       +              +   FR+    DP   ++ +++  +E
Sbjct: 471  FSKGEKLTKAMPPAVMGKDIPLSGMYNPQHPRYKEAEEFRKVVAEDPFNRQIFDLAAGVE 530

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R    HA  +++    L+ ++PM +  +    +TQF+    E  GL+K DFLGLK L
Sbjct: 531  GMVRQWGVHACAVIMSRETLTDVIPMMKRPQDGAMITQFDYPTCEHLGLLKMDFLGLKNL 590

Query: 580  TLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  +LD +        DL  +  DD  TY LL+T  TLG+FQL+  GMR  L+ ++P 
Sbjct: 591  TIISDALDNIKINGKTPPDLERLDVDDKATYELLSTGETLGVFQLDGGGMRTLLKQLRPT 650

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQ 692
              +DI ALV+LYRPGP+  ++   Y  RKNG +KI  IH  ++  LK     T G+IIYQ
Sbjct: 651  EFDDISALVALYRPGPMGANSHTNYAFRKNGLQKIEPIHSELEEPLKDILGYTYGLIIYQ 710

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ  +F  G  ++G S+     ++ +
Sbjct: 711  EQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMIEHGYSEDCCETLWGI 770

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T +  + +K+  +  + R+ 
Sbjct: 771  LVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQ-TDKDKLGMYLNEVRRM 829

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
             I+++PP VN     F    N I + LA+I+ VG      I++A  +   + S  DF  +
Sbjct: 830  GIKVLPPDVNQSYGVFAPDGNDIRFGLASIRNVGENVVAEIIKARQEKGAYTSFSDFLKK 889

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V ++  N+R + SL+ AGA D FG  R  L    +   +     ++  +N   ++FA  +
Sbjct: 890  VPAEVCNKRTIGSLIKAGAFDAFGAPRSALTAIHEQAVEAVVSTKRQESNGQFDLFAALE 949

Query: 932  GTFSDKI---------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
               ++            +   S    +     E+ +LG Y S HPL     +L  +    
Sbjct: 950  MEGTESPDNLLGSASIDIPDISEWPKNELLAFEREMLGMYVSDHPLSGMNRVLEGLAEDR 1009

Query: 983  YEESVATI---RGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
              +  +       + +++A +V +   K +++ G +       +     E  FF
Sbjct: 1010 IVDLTSDEGKGNDSPVKIAGLVTAVNVKISKRSGQQWAIAKIEDMTGSVEVLFF 1063


>gi|124002816|ref|ZP_01687668.1| DNA polymerase III alpha subunit [Microscilla marina ATCC 23134]
 gi|123992044|gb|EAY31431.1| DNA polymerase III alpha subunit [Microscilla marina ATCC 23134]
          Length = 1403

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1049 (34%), Positives = 563/1049 (53%), Gaps = 41/1049 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VHS +S+L+   S+  ++        PAIA TD  N+ +A +   +     ++ I
Sbjct: 240  FSHLHVHSQFSILQSTASVGGLIKFAKEHGMPAIAFTDHGNMHAAFKAVGEGAKNDVKVI 299

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC+  +  +     T   K+      + VLL    E Y RL +L S  Y+        R
Sbjct: 300  IGCEFYVAQE--RTKTKFTKSDRDRRFNQVLLAKDQEAYHRLAKLSSLGYIEGYYAGFPR 357

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    ++E   EGLI LTG   G I           AE+    +  LFGD  YV + RH 
Sbjct: 358  IGKDLIEEYH-EGLIALTGNLQGEIPDLILNQGEHEAEEAFKWWHNLFGDDFYVEIMRHG 416

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--- 246
              +  R    +++ A  + +  +ATNN  ++ +ED +AHD L+ V  +   S        
Sbjct: 417  QEEEERVNEVLLKFAAKYGVKPIATNNVYYIGDEDADAHDSLLCVKGADKKSTPKMFTPD 476

Query: 247  ---------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                         ++Y+K   EM  +FSD+P ALE T EI  +CS I      ++P +  
Sbjct: 477  IKRRNLRYGMPNEEYYMKTPEEMNELFSDIPIALETTQEIVDKCSPIKLKRDILMPVYEM 536

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                     +++ LR+    G            G   ++ R+RLD ELN+I  M F GYF
Sbjct: 537  PSEF---ATQDDYLRHLTYEGATK-------RYGEITEEIRERLDHELNIIKSMGFPGYF 586

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI  A+   + VGPGRGS AGS  A+ + IT+IDP++++LLFERFLNP+R+SMPD
Sbjct: 587  LIVQDFINAARDMGVFVGPGRGSAAGSAVAFCIGITNIDPIKYNLLFERFLNPERVSMPD 646

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             DIDF  + R + I YV +KYG  +VAQIIT+G++ AK A++DV R L++P    ++L K
Sbjct: 647  VDIDFDDEGRQDAINYVIDKYGKNQVAQIITYGTMAAKMAIKDVARVLELPIPDSNKLAK 706

Query: 478  LIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
             +P+ P   +        + +   AR      +++L  ++ LEG  R    HAAG++I  
Sbjct: 707  YVPDKPGTKLKDAFAEVQELKDVLARPEGDLENQVLRQAKILEGSVRGTGIHAAGVIIAP 766

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-K 595
              L + +P+     +DL VTQF+ K IE AG++K DFLGLKTLT+++ +L  + +     
Sbjct: 767  DDLLKYIPVCTSKDADLLVTQFDGKVIEDAGMLKMDFLGLKTLTVIKDALRMIKKNYDID 826

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D+  IP DD  T  L     T+G FQ ES GMR  L+ ++P  IED+IA+ +LYRPGP+
Sbjct: 827  IDMDKIPLDDQATLELYQNGETVGTFQFESEGMRMYLKQLKPTNIEDLIAMNALYRPGPL 886

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  + NRK+G E++   H L++P+L  T G+++YQEQ+MQ AQ+L GYSL  AD+LRR
Sbjct: 887  QFIPNFINRKHGTEEVEYPHDLLEPILNNTYGIMVYQEQIMQTAQILGGYSLGGADLLRR 946

Query: 716  AMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AMGKK  EEMD+Q+  F+ GA + +GI +  +  +FE++ +FA YGFN+SH+AAY+V++Y
Sbjct: 947  AMGKKKLEEMDRQEVIFMKGAKEIHGIPEEKSRKVFEVMKEFAKYGFNRSHSAAYSVVAY 1006

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-N 833
            QTA++K +YP E++A+ +T  M+N++K+  F  + +   +QI+ P VN     F V    
Sbjct: 1007 QTAYLKANYPSEYMASVLTHNMNNIDKVTFFIDETKNMGLQILGPDVNESEQSFTVNPVG 1066

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            +I + L A+KG G     +I+E    + PF  + DF  RV+ + +N++  E    AGA D
Sbjct: 1067 QIRFGLGAVKGTGDAAVENIIEERKKNGPFKDMFDFARRVNLRTVNKKSFECFAQAGAFD 1126

Query: 893  CFG-YSRMQLLQS--------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
              G   R Q   +        L+ I K+    +K   N   ++F         +  +   
Sbjct: 1127 NLGKLHRAQFFAAMPNDTATFLERIIKFGNAYQKEIENAKTSLFGASGAVTIAQPKVPYT 1186

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
               +   +   E+ V+GFY SGHPLD Y+  ++K G    ++  +      + +A +V  
Sbjct: 1187 EPWSQLEKLNREKEVVGFYMSGHPLDRYRAGMKKFGAVALDKIESFQH-QEVTVACIVTK 1245

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            K+ ++T+ G      +  + +   +   F
Sbjct: 1246 KELRQTKNGKPFTSFSIEDYSTSMDLALF 1274


>gi|330817862|ref|YP_004361567.1| DNA polymerase III, alpha subunit [Burkholderia gladioli BSR3]
 gi|327370255|gb|AEA61611.1| DNA polymerase III, alpha subunit [Burkholderia gladioli BSR3]
          Length = 1179

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1045 (38%), Positives = 602/1045 (57%), Gaps = 39/1045 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++++   AAD Q A+A+TD  N F  + F Q+A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDLVKAAAADGQGALALTDLGNAFGLVRFYQEARG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   KGVKPIAGCDVWITNHDDRDKP----------SRLLLLVRDKAGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +   WL+    +GL+ L+G   G I  A    +++ A +    + ++F    Y+
Sbjct: 110  YRGRAEVDAQWLESELGQGLLALSGAQQGDIGIALAAGNAEAARRHAQRWARVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          +  +LA   +LP+VAT+   F+ +ED+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGGEAYVQEAAKLAAELQLPVVATHPLQFMGDEDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T +   + ++EM  +F+D+P A++NTVEIA+RC+  L++  P LP F   +   
Sbjct: 230  RRQKRFTIEQRFRTQAEMAELFADIPSAVQNTVEIAKRCNLKLELGKPKLPLFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GLE RL Q    +         Y QRL+FE N I +M F GYFLI
Sbjct: 290  L----DDYLVQLSQEGLEKRLVQLFPDEAERDAQRATYYQRLEFECNTIKKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++   +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---K 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  F+ +       
Sbjct: 526  LTDFCPLYAQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERFIRRLDPAKAD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---- 831
            TAW+K H+P EF+AA+MTL MD+ +K+K    D     ++++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCELNGLKVLPPDINQSEYRFEPVAEAD 825

Query: 832  ---DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                  I Y L A+KG G      I+ A  +   F  L DFC R+D + +NRR +E+L+ 
Sbjct: 826  GKRSKTIRYGLGAVKGSGQNAIEEILRARKEGGAFKDLFDFCERIDRRLVNRRTVEALIR 885

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGA D    +R QL+ S+    + A   E N       +F     +      L      +
Sbjct: 886  AGAFDVLTPNRAQLIASVPLAMEAADQAEANAM--QAGLFDMGAES-PHAHALVDEPAWD 942

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
               R + E+  LGFY SGH  D Y+  +R+       E           +A ++ S + +
Sbjct: 943  EKRRLQEEKGALGFYLSGHLFDAYREEVRRFARMKLGELKEGRDK---LVAGVIASLRTQ 999

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G  +      +   + E   F
Sbjct: 1000 MTQRGK-MIIALLDDGTGQCEITVF 1023


>gi|159900372|ref|YP_001546619.1| DNA polymerase III subunit alpha [Herpetosiphon aurantiacus ATCC
            23779]
 gi|159893411|gb|ABX06491.1| DNA polymerase III, alpha subunit [Herpetosiphon aurantiacus ATCC
            23779]
          Length = 1296

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/1057 (33%), Positives = 542/1057 (51%), Gaps = 48/1057 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS YSLL+G  +   I ++ A  Q  +IAITD   ++ A+EF   A  A ++P
Sbjct: 3    DFVHLHVHSEYSLLDGYATTKAIAERAAELQMDSIAITDHGVMYGAMEFYANAKKANVKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG +  I    N     +G         ++L+     GY+ L++L SR +L   GK   
Sbjct: 63   IIGMEAYIAPNSNKDPMVKGGK---NYYHLLLIAQNEVGYRNLVKLTSRSHLDGMGKGIF 119

Query: 128  -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
               RI    L++   EGLI+ +   +G + +       Q A + +  F+ LFG +  ++ 
Sbjct: 120  ARPRIDRQLLEQYH-EGLIVTSSCIAGEVIQQVQAKQRQKAIETVAWFRDLFGPENYFIE 178

Query: 186  LQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV---V 240
            LQ H           ++V++A    +PLVATN++ F+  ED + H  +MA+  +     +
Sbjct: 179  LQLHNNTPELVEINEELVRIANEMHVPLVATNDTHFVRREDLDTHSRVMAMGFNLTLQEL 238

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              K+       H +                +ENT  IA  C+  L      LP F   E 
Sbjct: 239  CSKNYQMDETYHIMSGDEMWDRYKIYGTAPMENTRRIADMCNLKLDFGRVELPEFDIPEG 298

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D      + LR     GL  R        G   ++Y QRL +EL+VI +  F  Y LIV
Sbjct: 299  HD----AASYLRLICEEGLIKRC------NGNPTEEYVQRLSYELDVINQTGFPDYMLIV 348

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D++++A+ N IP  P RGS   S+  Y L ITD+DP++  LLFERFL+P+R+ MPD D 
Sbjct: 349  WDYVKFARSNGIPCLP-RGSAGASLVLYCLGITDVDPVQNKLLFERFLSPERLEMPDIDT 407

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR E++ Y+  KYG E VAQIIT+G+L AKAALRD+GR L +P S+VDR+ KLIP
Sbjct: 408  DFADARRGEILDYIATKYGRENVAQIITYGTLGAKAALRDMGRVLDIPLSEVDRVAKLIP 467

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              P      +++      ++    DP +  L++ +QK+EG  +   THA G+V+   PL 
Sbjct: 468  TLPVGMTIAKSLDKVPELKQIYDTDPKLRELMDWAQKVEGRMKSVGTHACGVVVSRHPLE 527

Query: 541  QLVPMYRDVRSDLPVT-QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
             +VP+ R  + +  V   F    + K GL+K D LGL  L++  ++L  + Q     + L
Sbjct: 528  NMVPLQRTTKDEHGVMAAFEGPTLAKMGLLKMDILGLTNLSVAAEALQLIEQTTGKTMWL 587

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            S IP DD +T+  L    T+ +FQLES+GM + L  ++P  ++D+  +V+LYRPGP++ I
Sbjct: 588  SDIPLDDKKTFEALGRGETVDVFQLESAGMTRYLVQLKPTRVDDLYGMVALYRPGPLEQI 647

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             VY + KN    I  IHP++ P+L++T GVI+YQEQ+MQ+ Q ++ Y+L EA ++ +A+ 
Sbjct: 648  PVYIHNKNNPHAIKYIHPILKPILEDTYGVIVYQEQIMQLLQAVAEYTLGEAYIVIKAIS 707

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK KE M +   RF  G  + G+++  A  ++EL+  FA Y FN+ H+  Y ++SYQTAW
Sbjct: 708  KKNKELMAENSVRFKEGCLRKGLTQAQADELWELILPFAGYSFNRPHSTLYGLLSYQTAW 767

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------ 832
            +K +YP E++ A+++     ++++ K   +A +  + + PP VN     F + D      
Sbjct: 768  LKNNYPTEYMTATLSAASGEIDEVAKSVAEASRLGVAVSPPDVNGSKEGFTIVDIAGELP 827

Query: 833  ------NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                    I + L+AI+ VG    + I++      PF S+EDFC+RVD   LN+RV+ESL
Sbjct: 828  EGIKYNRGIRFGLSAIRNVGVGPIQAILKVRDESGPFSSIEDFCARVDRGVLNKRVMESL 887

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-ITLEKFS 944
            V  GA+D    +R Q L  LD         +K R     ++F    G       T+    
Sbjct: 888  VKCGAMDSLPGTRHQKLAILDRAISAGHETQKAREAGQNSLFDMLGGGEQTSTPTISPIP 947

Query: 945  VENSS-------VRFENEQRVLGFYFSGHPLDV-YKPILRKMGIKGYEESVATIRGNNIR 996
               ++            E+ +LG Y S HP+           G            G  IR
Sbjct: 948  FPPAATGLEMQRELLNWEKELLGMYISEHPMAQALANAPHDPGRISLGMIDKKHIGTTIR 1007

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            L  M+ + ++ +T+KG  +      +   E E   FP
Sbjct: 1008 LIGMINNTKRIQTKKGDSMLVGKVEDLEGEIEFVAFP 1044


>gi|315656561|ref|ZP_07909448.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii
            subsp. holmesii ATCC 35242]
 gi|315492516|gb|EFU82120.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii
            subsp. holmesii ATCC 35242]
          Length = 1226

 Score =  735 bits (1897), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/1074 (32%), Positives = 555/1074 (51%), Gaps = 57/1074 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S  FVHL VH+ YS+L+GA  +  ++ K   +QQ A+AITD   LF A EF Q+   
Sbjct: 1    MPSS-EFVHLHVHTDYSILDGAAKIKRLVAKAVENQQKAVAITDHGYLFGAFEFYQECRN 59

Query: 65   AGIQPIIGCQLDIDMQD-------------NLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
            AGI+PIIG +  +                   +      +       + LL  T EG   
Sbjct: 60   AGIKPIIGLEAYVTPGTSRFDTTRVQWGTLEQQKAGDDVSARGAYTHMTLLSHTTEGMHN 119

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L  L S   L  Q  +  R     L+    EGLI   G  SG +         Q A +  
Sbjct: 120  LFRLGSYASLDGQMGKWPRADRELLERYH-EGLIGTAGCPSGEVQTRLRLGQYQEAVRAA 178

Query: 172  LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
               + +FG D  YV L  H    +      +++LA     P++ATN+S ++ +ED E  D
Sbjct: 179  GELQDIFGKDYFYVELMDHGLSIENRVRKDLLRLAREINAPVIATNDSHYVYKEDREIQD 238

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             ++ +     +S  DR R     Y      EM  +F+++PEAL+NT+ IA +C+      
Sbjct: 239  AMLCINSGDRLSNPDRFRFDGTDYYLRPSEEMHELFAEIPEALDNTLLIAEQCNVEFPDV 298

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                   +        ++E +    +   GL+ R   G       +++ R+R D+E+ +I
Sbjct: 299  KEGTFMPVFPV--PAGEDEVSWFIKEVERGLQYRFPNG------ISEEVRKRADYEVEII 350

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F  YFLIV+D+IQWAK N I VGPGRGSGAGS+ AYA+ ITD+DP++  LLFERFL
Sbjct: 351  VQMGFPSYFLIVSDYIQWAKDNGIRVGPGRGSGAGSMVAYAMRITDLDPIKHGLLFERFL 410

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D+DF   RR +VI YV  KYG ++V+Q++T+G++++K AL+D  R     
Sbjct: 411  NPERVSMPDIDVDFDDRRRQDVIDYVTRKYGKDKVSQVVTYGTIKSKQALKDAARISGAD 470

Query: 469  YSQVDRLCKLIPN-DPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLE 519
            +S+ ++L K +P       +              +   FR+    DP   ++ +++  +E
Sbjct: 471  FSKGEKLTKAMPPAVMGKDIPLSGMYNPQHPRYKEAEEFRKVVAEDPFNRQIFDLAAGVE 530

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R    HA  +++    L+ ++PM +  +    +TQF+    E  GL+K DFLGLK L
Sbjct: 531  GMVRQWGVHACAVIMSRETLTDVIPMMKRPQDGAMITQFDYPTCEHLGLLKMDFLGLKNL 590

Query: 580  TLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  +LD +        DL  +  DD  TY LL+T  TLG+FQL+  GMR  L+ ++P 
Sbjct: 591  TIISDALDNIKINGNTPPDLERLDVDDKATYELLSTGETLGVFQLDGGGMRTLLKQLRPT 650

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQ 692
              +DI ALV+LYRPGP+  ++   Y  RKNG +KI  IH  ++  LK     T G+IIYQ
Sbjct: 651  EFDDISALVALYRPGPMGANSHTNYALRKNGLQKIEPIHSELEEPLKDILGYTYGLIIYQ 710

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ  +F  G  ++G S+     ++ +
Sbjct: 711  EQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMIEHGYSEDCCETLWGI 770

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T +  + +K+  +  + R+ 
Sbjct: 771  LVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQ-TDKDKLGMYLNEVRRM 829

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
             I+++PP VN     F    N I + LA+I+ VG      I++A  +   + S  DF  +
Sbjct: 830  GIKVLPPDVNQSYGVFAPDGNDIRFGLASIRNVGENVVAEIIKARQEKGAYTSFSDFLKK 889

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V ++  N+R + SL+ AGA D FG  R  L    +   +     ++  +N   ++FA  +
Sbjct: 890  VPAEVCNKRTIGSLIKAGAFDAFGAPRSALTAIHEQAVEAVVSTKRQESNGQFDLFAALE 949

Query: 932  GTFSDKI---------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
               ++            +   S    +     E+ +LG Y S HPL     +L  +    
Sbjct: 950  MEGTESPDNLLGSASIDIPDISEWPKNELLAFEREMLGMYVSDHPLSGMNRVLEGLAEDR 1009

Query: 983  YEESVATI---RGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
              +  +       + +++A +V +   K +++ G +       +     E  FF
Sbjct: 1010 IVDLTSDEGKGNDSPVKIAGLVTAVNVKISKRSGQQWAIAKIEDMTGSVEVLFF 1063


>gi|308235821|ref|ZP_07666558.1| DNA polymerase III subunit alpha [Gardnerella vaginalis ATCC 14018]
 gi|311114403|ref|YP_003985624.1| DNA-directed DNA polymerase III subunit alpha [Gardnerella vaginalis
            ATCC 14019]
 gi|310945897|gb|ADP38601.1| DNA-directed DNA polymerase III alpha subunit [Gardnerella vaginalis
            ATCC 14019]
          Length = 1183

 Score =  735 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/1062 (32%), Positives = 544/1062 (51%), Gaps = 50/1062 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YSLL+GA  + +++ +      PA+AITD  N+  A E    A  AGI+PI
Sbjct: 8    FVHLHNHTHYSLLDGASKIPDLVARAKELGMPAVAITDHGNMHGAYEMWSTAVKAGIKPI 67

Query: 71   IGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IG +  +  +                 +   +    +  + +     EG   L++  S  
Sbjct: 68   IGIEAYVTPETARQDKSRVHWGTEAQRSDDVSGGGLITHMTMWAENDEGLTNLLKASSIA 127

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             L  +  +  R+    L    ++G+I  +G  SG I           A +    F+ +FG
Sbjct: 128  NLEGRVMRYPRMDKDVLSRY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 186

Query: 180  -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    +      ++++A     PL+ATN+  ++ EED EA D ++ +   
Sbjct: 187  RDNFFIELMNHGLSIETRVTKDLLEIAKRLNAPLLATNDLHYVHEEDREAQDAMLCINSG 246

Query: 238  TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
            + +   DR +     +YLK+  +M  +F + PEA +NT+EIARRC+ +            
Sbjct: 247  SRLDDPDRFKFDGSGYYLKSAEQMRELFKEFPEACDNTLEIARRCNVMFDDGEDGAFMPQ 306

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                +    +E +    K   GLE R             +  ++ D+E  VI +M+F GY
Sbjct: 307  FDCPEG--WDETSLFLKKVEEGLERRYNNNV------PMEVLKQADYECGVICQMQFCGY 358

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++  L+FERFLNP+R+S+P
Sbjct: 359  FLVVADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPMKHGLIFERFLNPERVSLP 418

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  D R +V+ YV  KYG ++VAQ + +G+++ K AL+D  R +   +S  +++ 
Sbjct: 419  DIDVDFDPDGRAKVLEYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKIT 478

Query: 477  K-LIPNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHAST 527
            K L P      +S   I D+          FRE    DP   R+ E ++ +EGL R    
Sbjct: 479  KILPPPKNGKDMSFHDIFDEKSKRYAEAREFREMYDTDPDTKRITEEAKGIEGLIRQTGV 538

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            HA   ++G  P++   P+  +       T F     E  GL+K DFLGL  LT+++ +L 
Sbjct: 539  HACATIMGSEPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTVIRDTLK 597

Query: 588  FLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             +       +D + IP DD ETY LL    TLG+FQL+S GMR  L  ++PD   DI AL
Sbjct: 598  NVEHNGKEPIDYTKIPLDDKETYQLLARGDTLGVFQLDSDGMRALLRTLKPDNFNDISAL 657

Query: 647  VSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQIAQ 700
            ++LYRPGP+D      Y  RKNG ++I  IHP     +  +L ET G+I+YQEQV   A+
Sbjct: 658  IALYRPGPMDMDSHTNYAKRKNGLQEITPIHPEVAEPLKDVLGETYGLIVYQEQVQSAAR 717

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            +L+GYSL +ADVLRRAMGKK  E + K+K  F  G  ++G S+  A  ++++L  F+ Y 
Sbjct: 718  ILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFKGMKEHGYSEEAAQAVWDVLVPFSGYA 777

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNK+H+AAY +ISY TA++KTHYPVEF+AA +  E  N +K   +  +AR+  I+++ P 
Sbjct: 778  FNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQNERTNKDKTALYLGEARRMGIRVLQPD 837

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS--ADKPFDSLEDFCSRVDSKKLN 878
            +N   +++    + + + L A++ VG      I+         F   +DF +RV    LN
Sbjct: 838  INESVLEYSAVGDVVRFGLGAVRNVGDKAVNDIISERESERGKFIDFKDFVNRVSFAALN 897

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----HEKGTF 934
            RR++ESL+ +GA D     R  + +  + +      +++ +     ++FA     +    
Sbjct: 898  RRLVESLIKSGAFDSINPCRRAIFEICEPLIDSVISIKRRQAGGQFDLFADLDDSDSDLG 957

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--- 991
              +I +      +   +   E+ +LG Y S HPL     +L  +      + +   +   
Sbjct: 958  DAQINIPDVEEWDKKTKLNFEREMLGLYVSDHPLSGLSAVLAGLREMSIAQLLNRAKTMG 1017

Query: 992  -GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                + LA +V S  ++ ++KG+    VT  +     +  FF
Sbjct: 1018 ENQQVTLAGLVTSVDRRVSKKGNAWAIVTIEDMESSIQCMFF 1059


>gi|315655526|ref|ZP_07908425.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii
            ATCC 51333]
 gi|315490181|gb|EFU79807.1| DNA-directed DNA polymerase III alpha subunit [Mobiluncus curtisii
            ATCC 51333]
          Length = 1225

 Score =  735 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/1074 (32%), Positives = 555/1074 (51%), Gaps = 57/1074 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S  FVHL VH+ YS+L+GA  +  ++ K   +QQ A+AITD   LF A EF Q+   
Sbjct: 1    MPSS-EFVHLHVHTDYSILDGAAKIKRLVAKAVENQQKAVAITDHGYLFGAFEFYQECRN 59

Query: 65   AGIQPIIGCQLDIDMQD-------------NLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
            AGI+PIIG +  +                   +      +       + LL  T EG   
Sbjct: 60   AGIKPIIGLEAYVTPGTSRFDTTRVQWGTLEQQKAGDDVSARGAYTHMTLLSYTTEGMHN 119

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L  L S   L  Q  +  R     L+    EGLI   G  SG +         Q A +  
Sbjct: 120  LFRLGSYASLDGQMGKWPRADRELLERYH-EGLIGTAGCPSGEVQTRLRLGQYQEAVRAA 178

Query: 172  LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
               + +FG D  YV L  H    +      +++LA     P++ATN+S ++ +ED E  D
Sbjct: 179  GELQDIFGKDYFYVELMDHGLSIENRVRKDLLRLAREINAPVIATNDSHYVYKEDREIQD 238

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             ++ +     +S  DR R     Y      EM  +F+++PEAL+NT+ IA +C+      
Sbjct: 239  AMLCINSGDRLSNPDRFRFDGTDYYLRPSEEMHELFAEIPEALDNTLLIAEQCNVEFPDV 298

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                   +        ++E +    +   GL+ R   G       +++ R+R D+E+ +I
Sbjct: 299  KEGTFMPVFPV--PAGEDEVSWFIKEVERGLQYRFPNG------ISEEVRKRADYEVEII 350

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M F  YFLIV+D+IQWAK N I VGPGRGSGAGS+ AYA+ ITD+DP++  LLFERFL
Sbjct: 351  VQMGFPSYFLIVSDYIQWAKDNGIRVGPGRGSGAGSMVAYAMRITDLDPIKHGLLFERFL 410

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D+DF   RR +VI YV  KYG ++V+Q++T+G++++K AL+D  R     
Sbjct: 411  NPERVSMPDIDVDFDDRRRQDVIDYVTRKYGKDKVSQVVTYGTIKSKQALKDAARISGAD 470

Query: 469  YSQVDRLCKLIPN-DPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLE 519
            +S+ ++L K +P       +              +   FR+    DP   ++ +++  +E
Sbjct: 471  FSKGEKLTKAMPPAVMGKDIPLSGMYNPQHPRYKEAEEFRKVVAEDPFNRQIFDLAAGVE 530

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R    HA  +++    L+ ++PM +  +    +TQF+    E  GL+K DFLGLK L
Sbjct: 531  GMVRQWGVHACAVIMSRETLTDVIPMMKRPQDGAMITQFDYPTCEHLGLLKMDFLGLKNL 590

Query: 580  TLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  +LD +        DL  +  DD  TY LL+T  TLG+FQL+  GMR  L+ ++P 
Sbjct: 591  TIISDALDNIKINGKTPPDLERLDVDDKATYELLSTGETLGVFQLDGGGMRTLLKQLRPT 650

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQ 692
              +DI ALV+LYRPGP+  ++   Y  RKNG +KI  IH  ++  LK     T G+IIYQ
Sbjct: 651  EFDDISALVALYRPGPMGANSHTNYAFRKNGLQKIEPIHRELEEPLKDILGYTYGLIIYQ 710

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVM IAQ ++G++L +AD+LR+AMGKK K+ +DKQ  +F  G  ++G S+     ++ +
Sbjct: 711  EQVMAIAQKVAGFTLGQADILRKAMGKKKKDVLDKQYVKFHDGMIEHGYSEECCETLWGI 770

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FADY FNKSH+AAY +I+Y TA++K ++P E++AA +T +  + +K+  +  + R+ 
Sbjct: 771  LVPFADYAFNKSHSAAYGLIAYWTAYLKANFPTEYMAAVLTTQ-TDKDKLGMYLNEVRRM 829

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
             I+++PP VN     F    N I + LA+I+ VG      I++A  +   + S  DF  +
Sbjct: 830  GIKVLPPDVNQSYGVFAPDGNDIRFGLASIRNVGENVVAEIIKARQEKGAYTSFSDFLKK 889

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V ++  N+R + SL+ AGA D FG  R  L    +   +     ++  +N   ++FA  +
Sbjct: 890  VPAEVCNKRTIGSLIKAGAFDAFGAPRSALTAIHEQAVEAVVSTKRQESNGQFDLFAALE 949

Query: 932  GTFSDKI---------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
               ++            +   S    +     E+ +LG Y S HPL     +L  +    
Sbjct: 950  MEGTESPDNLLGSPSIDIPDISEWPKNELLAFEREMLGMYVSDHPLSGMNRVLEGLAEDR 1009

Query: 983  YEESVATI---RGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
              +  +       + +++A +V +   K +++ G +       +     E  FF
Sbjct: 1010 IVDLTSDEGKGNDSPVKIAGLVTAVNVKISKRSGQQWAIAKIEDMTGSVEVLFF 1063


>gi|167562082|ref|ZP_02354998.1| DNA polymerase III subunit alpha [Burkholderia oklahomensis EO147]
          Length = 1105

 Score =  735 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1044 (39%), Positives = 601/1044 (57%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F ++A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  SWL+    EGL+ L+G   G I  A    +   A +    + K F    Y+
Sbjct: 110  YRGRAELDASWLEGEFAEGLLALSGAQQGDIGLALAAGNEAAARRHAERWAKTFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+          Q V +A   +LP+VAT+   F++ +D+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQQAVTIAAELKLPVVATHPLQFMTADDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T D + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LP F   +   
Sbjct: 230  RRQKRFTTDQFFRTQDDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GLE    +L      +      Y QRLDFE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSKEGLEKRLVQLYPDEAEREAQRDTYCQRLDFECGTIKKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++   +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKEN 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPASFQMLKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+      ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVEYPDMRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG++   A  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAKHRELFREGAAKNGLTAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D     + ++ P +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNGLAVLSPDINQSHYRFEPVAEAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ A
Sbjct: 826  GKRSRTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEALIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GALD    +R QLL S+    + A+    N       +F    G  + +  L      + 
Sbjct: 886  GALDSLHANRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGEPAHQHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + + 
Sbjct: 943  KRRLQEEKSALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MVIALLDDGTGQCEITVF 1022


>gi|326316817|ref|YP_004234489.1| DNA polymerase III subunit alpha [Acidovorax avenae subsp. avenae
            ATCC 19860]
 gi|323373653|gb|ADX45922.1| DNA polymerase III, alpha subunit [Acidovorax avenae subsp. avenae
            ATCC 19860]
          Length = 1181

 Score =  735 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1056 (39%), Positives = 600/1056 (56%), Gaps = 57/1056 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   ++ +    + D QPA+AITD +NLF A++F ++A   G++P+
Sbjct: 2    FVHLRLHTEFSVVDGTTRIDEVAKAASKDGQPALAITDLHNLFGAIKFYKEARGKGVKPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ I+ +          T       I+LL    +GY  L E+++R +  +  K    
Sbjct: 62   LGAEVSIEPE----------TAGNPPGRILLLAQGRQGYLNLCEMLARAWTRNVVKNVPL 111

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
                WL+E+G + LI L+G  +GP+ +AF       A +  L    LF  R Y+ LQR  
Sbjct: 112  CTWEWLEELGGD-LIALSGAQAGPVGQAFTRGDDAGAARVALRLAGLFPHRFYLELQRAG 170

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
            R  D  +    VQLA    LP+VAT  + FL+ +DYEAH+  + +A   +++   R  R 
Sbjct: 171  RPEDESQVVAAVQLAARLNLPVVATQPTQFLTADDYEAHEARVCIAEGEILANPRRVRRF 230

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + Y K+ ++M ++F+D+P A+ NT+EIARRCS  L +  P LP F       I    +
Sbjct: 231  TREQYFKSSAQMEALFADVPTAIANTLEIARRCSLTLVLGKPRLPDFPTPNGMPI----D 286

Query: 309  NELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R  +  GLE     L +    +      Y +RL+FELN I +M F GYFLIV DFIQ
Sbjct: 287  EYFRYASFEGLEERLKHLFRNEAERDKQRPRYVERLEFELNTILKMGFPGYFLIVGDFIQ 346

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK+N  PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ 
Sbjct: 347  WAKENGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQS 406

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV++KYG   V+QI TFG++ AKAA+RDVGR + M Y+  D + KL+P  P  
Sbjct: 407  NRDRVIDYVKDKYGKNAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGM 466

Query: 486  PVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
              +                A+  +    E    +  V  ++E++QKLEG+ R+   HA G
Sbjct: 467  SYTLAYPPEVKKEGDKNNYALELEPMLYERVRKEEDVKTVIEMAQKLEGMTRNIGMHAGG 526

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            ++I    L+   P+Y+   S+  V+Q++   +E  GL+KFDFLGL TLT+L+ + +F+ +
Sbjct: 527  VLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMK 586

Query: 592  RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R           IP DD  TY L +   T  +FQ ES GM+  L+  +P  +ED+IAL +
Sbjct: 587  RHKGQENFAFENIPLDDAPTYRLFSEGKTEAVFQFESRGMQGMLKEARPSRLEDLIALNA 646

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  + NRK+GKE +   HPL++P+L ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 647  LYRPGPMDLIPTFVNRKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLG 706

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM + +E F  GA++ GI +  A  +F+L+ KFA YGFNKSHAAA
Sbjct: 707  GADMLRRAMGKKKAEEMAEHREIFRKGAAEKGIGQDKADEVFDLMEKFAGYGFNKSHAAA 766

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA +  +   PP VN     F
Sbjct: 767  YSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLYEDAMKMGLTFEPPDVNRGMYRF 826

Query: 829  K-VGDNRIYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKKL 877
            + V D  I Y L A+KG G      I+ A              PF SL DFC+RVD  +L
Sbjct: 827  EPVTDKVIRYGLGAVKGTGQQAIEAIIAAREGRGVGPRGDTKGPFASLFDFCARVDRTRL 886

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGT 933
            N+R LE+L+ AGA D    +R  L+ S+D    +A  +  N       +F        G+
Sbjct: 887  NKRTLEALIKAGAFDAIEMNRASLVASIDRAFDFANSLIAN--ANQGGLFDMMGDDSHGS 944

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
             +    L +        R   E+  +GFY SGH  D  +  +R+      EE   +    
Sbjct: 945  STQDPALVEMLPWGVKERLTQEKTAVGFYLSGHLFDEVEKEVRRFIRTPIEELADSREPQ 1004

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
               +A +V   +    ++G R+      + +   EA
Sbjct: 1005 --IMAGIVSDFRVINGQRG-RLALFKLDDKSAMIEA 1037


>gi|326335784|ref|ZP_08201964.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga sp.
            oral taxon 338 str. F0234]
 gi|325692023|gb|EGD33982.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga sp.
            oral taxon 338 str. F0234]
          Length = 1485

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/1086 (32%), Positives = 552/1086 (50%), Gaps = 75/1086 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----- 61
            +S  F HL  HS +S+L+   S+ +++   A +  PA+A+TD  N+  A  F+++     
Sbjct: 252  QSAPFAHLHNHSQHSVLQSTASIADLVTAAAKENMPAVALTDHGNMMGAFHFTKEVAKHN 311

Query: 62   --ACAAG--------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
              A A                I+PIIGC+  I         +  KT       +VLL   
Sbjct: 312  KEAKAKNAKLEEEGKPATHTLIKPIIGCEFYIC------ENHLDKTKKDNGYQVVLLAKN 365

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
             +GYQ LI++ S  Y  +      RI    +++   + LI+L+G   G I        ++
Sbjct: 366  KDGYQNLIKMASIAYT-EGFYYVPRIDKGIVEQY-KDQLIVLSGNLQGEIPSKILNLGNR 423

Query: 166  VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEED 224
             AE+ LL +K+ F +  Y+ L RH   +  R  + +++LA  H + LVATNN+ ++S +D
Sbjct: 424  QAEEALLWWKEHFQEDFYIELMRHGQENENRANAVLIELAKKHGVKLVATNNTYYISPQD 483

Query: 225  YEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
              AHD+L+ V      +                ++Y K+  +M  +F D+PEA+ +  EI
Sbjct: 484  ANAHDILLCVKDGEKQATTIGQGRGFRNGLPNEEYYFKSSQQMKELFKDIPEAILSIKEI 543

Query: 278  ARRCSFILQVHAPILPRFIEKEC------DDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
              + +        +LP+F   +          +K E   LR+    G +           
Sbjct: 544  IDKITPYELARNILLPKFSIPKEFQMEGDPTGKKGENKYLRHLTYLGAKK-------RYK 596

Query: 332  YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
                + R+RLDFEL++I +  + GYFLIV DFI  A+   + VGPGRGS AGS  AY L 
Sbjct: 597  ELTNEVRERLDFELSIIEKTGYPGYFLIVEDFITAARNMGVSVGPGRGSAAGSAVAYCLG 656

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT+IDP+++ LLFERFLNPDR+SMPD DIDF  D R  V+ YV  KYG  +VAQI T+G+
Sbjct: 657  ITNIDPIKYDLLFERFLNPDRVSMPDIDIDFEDDGRGRVLDYVIGKYGANQVAQIATYGT 716

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR-----------FRE 500
            + AK+++RD  R L +P  + D++ KLIPN     +      +               ++
Sbjct: 717  MAAKSSIRDTARVLDLPLKEADQIAKLIPNISLKKIFSLTDEELKEKVGSDLPKIDKLKK 776

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
                     + ++ +  LEG  R+   HA G++I    ++  VP+     SDL VTQF+ 
Sbjct: 777  IAEGHDLSAKTVQQACILEGSVRNTGIHACGVIITPDDITNFVPVMLAKDSDLFVTQFDN 836

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLG 619
              +E AGL+K DFLGLKTLT+L+ ++  + +R     D+  IP DD  TY L     T+G
Sbjct: 837  SVVESAGLLKMDFLGLKTLTILKDAVSLIQKRHGFELDIDHIPLDDKPTYALFQRGETIG 896

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            IFQ ES GM++ +  ++P    D+IA+ +LYRPGP+D I  + +RK G E I      ++
Sbjct: 897  IFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPMDYIPSFIHRKQGIEPITYDLADME 956

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
              LK+T G+ +YQEQVM ++Q L+G++  EAD LR+AMGKK+K+ + + K +FI G  K 
Sbjct: 957  EYLKDTYGITVYQEQVMLLSQKLAGFTKGEADKLRKAMGKKLKDVLAEMKPKFIEGGGKK 1016

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G    +   I++    FA Y FNKSH+  YA I+YQTA++K +YP EF+AA ++  M+++
Sbjct: 1017 GHPAEVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKANYPAEFMAAVLSNNMNDI 1076

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA 858
            + I  F  +  +  I+++ P VN     F V  +  I + + A+KG+G      I+E   
Sbjct: 1077 KSISFFLSECHRMGIKVLSPDVNESEYKFTVNKEGAIRFGMGAVKGLGKAAVDTIVETRK 1136

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS--------LDNIQ 909
               + S+ D   R+D K  N++  ESL  AG  D F    R Q            L+ I 
Sbjct: 1137 SGAYQSIFDMVKRIDLKSANKKAFESLALAGGFDSFPEVHRAQFFHQEPSENMVFLEKIL 1196

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +Y    +++  +   ++F     T   +  +      +   +   E+ V+G Y SGHPLD
Sbjct: 1197 RYGAKAQESAKSIQLSLFGDSPETQIPEPKMPYTEEWSPMEKLRREKEVVGIYISGHPLD 1256

Query: 970  VYKPILRKMGIKGYEESVATIRG---NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            ++K  L+ +  K   E    + G     +R   ++   + K ++ G   G  T  + +  
Sbjct: 1257 IFKYQLQYLCNKEVIELSGGLEGLENQVVRFGGIITKTEHKTSKTGKGWGIFTIEDYSGV 1316

Query: 1027 YEANFF 1032
             E   F
Sbjct: 1317 AEFRIF 1322


>gi|291457517|ref|ZP_06596907.1| DNA polymerase III, alpha subunit [Bifidobacterium breve DSM 20213]
 gi|291381352|gb|EFE88870.1| DNA polymerase III, alpha subunit [Bifidobacterium breve DSM 20213]
          Length = 1185

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/1064 (32%), Positives = 537/1064 (50%), Gaps = 52/1064 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L  H+ YSLL+GA  + ++  + A  + PA+ ITD  N+  A E      A G++PI
Sbjct: 8    FVQLHNHTHYSLLDGASKIPDLAKRAAELEMPAVGITDHGNMHGAYEMYTNCVANGVKPI 67

Query: 71   IGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IG +  +  +                     +    +  + +     EG   LI+  S  
Sbjct: 68   IGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNLIKASSVA 127

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             L  +  +  R+    L    ++G+I  +G  SG I           A +    F+ +FG
Sbjct: 128  NLEGRVMRYPRMDKEVLSTY-SKGVIASSGCPSGIIQTRLRLGQFDEALRAAGEFQDIFG 186

Query: 180  -DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             D  ++ L  H    +      ++ +A   + PL+ATN+S ++  ED  A D ++ +   
Sbjct: 187  KDNFFIELMDHGLTIENQVTDDLLTIAKKLDAPLLATNDSHYVHAEDAGAQDAMLCINSG 246

Query: 238  TVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
            + +   DR +     +Y+K   EM  +F D P+A +NT+ IA RC+ +   H        
Sbjct: 247  SRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLLIAERCNVMFDDHEDGAFMPQ 306

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                +    +E +    K   GLE R        G    +  ++ D+E  VI +M+F GY
Sbjct: 307  FPCPEG--WDETSLFLKKVEEGLEKRY------DGNPPLNVLKQADYECGVICQMQFCGY 358

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL+VAD+IQWAK + I VGPGRGS AG++ AY++ IT++DPL+  L+FERFLNP+R+S+P
Sbjct: 359  FLVVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVSLP 418

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  + R  VI Y   KYG ++VAQ + +G+++ K AL+D  R +   +S  +++ 
Sbjct: 419  DIDVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKVT 478

Query: 477  KLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHAS 526
            K +P        +SL  I D S         FRE   +DP   R+ E ++ +EGL R   
Sbjct: 479  KALPPAATGGKDISLHDIFDPSAKRYAEAREFREMYDSDPDAKRITEEAKGIEGLIRQTG 538

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HA   ++G  P++   P+  +       T F     E  GL+K DFLGL  LT++  +L
Sbjct: 539  VHACATIMGSAPITDTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTVIHDTL 597

Query: 587  DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
              +       +D + IP DD ETY L+    TLG+FQL+S GMR  L+ ++PD   DI A
Sbjct: 598  KNIEANGKPAIDYTKIPLDDAETYKLMARGDTLGVFQLDSDGMRSLLKTLKPDNFNDISA 657

Query: 646  LVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIA 699
            L++LYRPGP+       Y  RKNG +KI  IHP ++  LK+    T G+IIYQEQV   A
Sbjct: 658  LIALYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQSAA 717

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            ++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  A  ++++L  F+ Y
Sbjct: 718  RILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEAANAVWDILVPFSGY 777

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+  IQ++ P
Sbjct: 778  AFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQVLSP 837

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDSKKL 877
             VN     +    + + + L AI+ VG      I+         F +  DF  RV    L
Sbjct: 838  DVNESVYAYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPLTAL 897

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NRR++ESL+ AGA D    +R  L    +        +++ +     ++F+      ++ 
Sbjct: 898  NRRLVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDADDGGAEA 957

Query: 938  -----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR- 991
                 +T+      +   +   E+ +LG Y S HPL   + IL  +        +   + 
Sbjct: 958  MGDASVTVPDIEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLIDRAKT 1017

Query: 992  ---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               G  + LA ++    ++ ++KG+    VT  +     +  FF
Sbjct: 1018 MGEGQQVTLAGLITGVDRRVSKKGNPWAIVTIEDMESSIQCMFF 1061


>gi|283456439|ref|YP_003361003.1| DnaE DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
 gi|283103073|gb|ADB10179.1| DnaE DNA polymerase III alpha subunit [Bifidobacterium dentium Bd1]
          Length = 1188

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/1072 (31%), Positives = 541/1072 (50%), Gaps = 63/1072 (5%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H+ YSLL+GA  + +++ +      PA+ ITD  N+  A E    A  AGI+PIIG 
Sbjct: 3    LHNHTHYSLLDGASKIPDLVKRAKELNMPAVGITDHGNMHGAYEMWSTAVNAGIKPIIGI 62

Query: 74   QLDIDMQ---------------------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            +  +  +                     ++ K      +    +  + +   T EG   L
Sbjct: 63   EAYVTPETARQDPTRVSWDTNWNPDLDPNHRKRNPNDVSGGGLITHLTMWAETDEGLVNL 122

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
            ++  +   L  +  +  R+    L +  ++G+I  +G  SG I           A +   
Sbjct: 123  MKASTDANLEGRVMRYPRMDKEILSKY-SKGIIASSGCPSGIIQTRLLLGQFDEALRAAG 181

Query: 173  TFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              + +FG D  Y+    H    +R     ++ +A     PL+ATN+S ++  ED  A D 
Sbjct: 182  ELQDIFGRDNFYIEFMDHGLNIERQVTDGLLDIAKKLNAPLLATNDSHYVRAEDAGAQDA 241

Query: 231  LMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
            ++ +   + + +  R +     +YLK+  EM  +F DLPEA +NT+EIA RC+ +   H 
Sbjct: 242  MLCINSGSTLDEPGRFKFDGTGYYLKSAEEMRELFKDLPEACDNTLEIAERCNVMFDDHE 301

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                       +    +E +    K   GLE R        G    +  ++ D+E  VI 
Sbjct: 302  DGAFMPQFDCPEG--WDETSLFLKKVEEGLEKRY------DGNPPIEVLKQADYECGVIC 353

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M+F GYFL+VAD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++  L+FERFLN
Sbjct: 354  QMQFCGYFLVVADYINWAKTHGVMVGPGRGSAAGAMVAYAMGITELDPIQHGLIFERFLN 413

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+S+PD D+DF  D R  V+ YV  KYG ++VAQ + +G+++ K AL+D  R +   +
Sbjct: 414  PERVSLPDIDVDFDPDGRGRVLDYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGFDF 473

Query: 470  SQVDRLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLE 519
            S  +R+ K +P        + L  I D +         FRE   +DP   R+ + +  +E
Sbjct: 474  SMGERVTKALPPAQTGGKDIPLHDIFDPASKRYAEAREFRELYDSDPDAKRVTDEAMGIE 533

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HA   ++G  P++   P+  +       T       E  GL+K DFLGL  L
Sbjct: 534  GLIRQTGVHACATIMGSEPITNTSPL-LERTDGTVTTTLEYHTCETLGLVKMDFLGLSNL 592

Query: 580  TLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T+++ +L+ +      ++D + IP DD  TY LL+   TLG+FQL+S GMR  L+ ++P 
Sbjct: 593  TVIRDTLNNIEANGKDRIDHTRIPLDDKATYELLSRGDTLGVFQLDSDGMRSLLKTLKPS 652

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQ 692
               DI AL++LYRPGP+D      Y  RKNG +KI  IHP     +  +L ET G+I+YQ
Sbjct: 653  NFNDISALIALYRPGPMDMDSHTNYAKRKNGLQKITPIHPEVAEPLKEVLDETYGLIVYQ 712

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV   A++L+GYSL +ADVLRRAMGKK  E + K+K  F +G  ++G S+  A  ++++
Sbjct: 713  EQVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEKIPFFAGMKEHGYSQEAAQAVWDI 772

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  F+ Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +     N +K   +  +AR+ 
Sbjct: 773  LVPFSGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGASTNKDKTALYLGEARRM 832

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCS 870
             IQ++ P VN    ++    + + + L AI+ VG      I++        + +  DF  
Sbjct: 833  GIQVLSPDVNESVFEYSAVGDVVRFGLGAIRNVGRNAVDDIIKERESGHGKYVNFPDFVR 892

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            RV    LNRR++ESL+ AGA D    +R  L    +        +++ +     ++F+  
Sbjct: 893  RVPLSALNRRLVESLIKAGAFDSVDPNRRALFTIHEAAINSVVGIKRKQAEGQFDLFSDL 952

Query: 931  KGTFSDK------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
              +          +++      +   +   E+ +LG Y S HPL   + +L  +      
Sbjct: 953  DDSAEQDGMGDAMVSVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQSVLSSLREMSIA 1012

Query: 985  ESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +        G  + +A ++ +  ++ ++KG+    VT  +     +  FF
Sbjct: 1013 HLIDRAGTMPDGQQVTVAGLITNVDRRVSKKGNPWAIVTIEDLESSIQCMFF 1064


>gi|149177980|ref|ZP_01856577.1| DNA polymerase III alpha subunit [Planctomyces maris DSM 8797]
 gi|148843173|gb|EDL57539.1| DNA polymerase III alpha subunit [Planctomyces maris DSM 8797]
          Length = 1154

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1027 (34%), Positives = 561/1027 (54%), Gaps = 32/1027 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +L+GA  +  ++ K+      ++AITD  NL+ A++F Q   +  + PI+G +  I  + 
Sbjct: 1    MLDGASRIPEMVSKVKEAGMNSLAITDHGNLYGAMDFYQHCRSQDVNPILGLEAYIAPRS 60

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
              +              + LL    +G++ LI+L S  YL +      RI    L E  +
Sbjct: 61   RFEKGAS--RMKEASFHLTLLAQNRQGFENLIKLSSASYL-EGFYYKPRIDKEIL-EAHS 116

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-GYDRYRESQV 200
            EGLI+LTG ++G +         + AEK    ++K+FGDR+Y+ +Q       R      
Sbjct: 117  EGLILLTGCAAGELSHHILGEDWEEAEKLCAWYEKVFGDRVYMEIQNAGLEIQRQCLEGT 176

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSE 259
            V LA    LPLVATN++ ++ ++D EA DVL+ V+   VVS + R ++T    +++ + E
Sbjct: 177  VDLANRMGLPLVATNDAHYVDQKDAEAQDVLLCVSTRAVVSDEKRMKMTGDQFFVRTQDE 236

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M + F  L +A+  T E+A R             +F           +   LR      L
Sbjct: 237  MYNAFPGLEDAVARTQELAERV-----DIQMSDKKFYPVFQPPDNLTDTQYLRKLCEERL 291

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
             ++            Q +  RLD EL VI +M +S YFLIV DF+Q+A+   IP    RG
Sbjct: 292  PIKYGD------ELTQAHWDRLDLELGVIEQMGYSSYFLIVWDFVQFAENEGIP-CTARG 344

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            S  G++ A+ L ++ + PL++ LLFERFL+P R   PD DIDFC+DRR  VI Y + KYG
Sbjct: 345  SACGAIVAFLLGMSQVCPLKYDLLFERFLDPSRTEPPDIDIDFCRDRRQLVIDYTKQKYG 404

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + VAQI TFG+L+AKAA+RDVGRAL +P ++V+ + K+IP      +    + +    +
Sbjct: 405  EKSVAQIGTFGTLKAKAAIRDVGRALGVPLARVNEIAKMIPESLGIKLKDA-LKESPDLQ 463

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
             A   D  + RLL+++ +LEGL R A THAAG+V+ D PLS++VP+         +TQ++
Sbjct: 464  SAYDQDSEIKRLLDLAMQLEGLCRSAGTHAAGVVVADLPLSEVVPLQSITGKTDIITQWD 523

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
               +E  GL+K DFLGL+ LT+L K++      RG+ ++   +P DD ET+ LL    T 
Sbjct: 524  GPTVESVGLLKMDFLGLRNLTILDKAVQNVKKHRGIDINPHKLPLDDQETFELLQRGETK 583

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHP 676
            GIFQLES GMR  L  M+PD  EDIIA  +LYRPGP++  +V    + KN +  I  +HP
Sbjct: 584  GIFQLESGGMRDLLTKMKPDKFEDIIATSALYRPGPLEGGMVMQYVDVKNNRIPIPKVHP 643

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            ++D +L ET GV++YQEQVM+I   + G  LS A    +A+ KK  + +   +++++ GA
Sbjct: 644  IVDEILDETYGVMVYQEQVMRILNRVGGIELSAAYRCIKAISKKKLKIIADFRDQYLEGA 703

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
             K+G+   +A ++FE++ KFA YGFNKSH+ AY  ++Y TA++K HYP EF+AA ++  M
Sbjct: 704  KKSGVDVKLATDLFEMIEKFAGYGFNKSHSTAYGGVAYATAYLKAHYPKEFMAALLSCGM 763

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
            ++ E+I +   D R+  I+++PP +N   V+F V   +I + + AIKGVG      +++ 
Sbjct: 764  ESHERITEHVDDCRRMKIEVLPPDINRSEVEFSVDGEKIRFGMGAIKGVGEQVLEAVVKE 823

Query: 857  S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
               + PF SL + C RVD K LN+  LE+L+ AGAL+  G ++ QL+ +++   + A  +
Sbjct: 824  REENGPFTSLYNLCERVDPKTLNKSTLETLIKAGALNSLGGNQAQLMLTVERAVQSALNI 883

Query: 916  EKNRTNKHENIFA----HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
             ++R    +++F      E+    ++ +L +      + +   E+ V GFY + HPL   
Sbjct: 884  HRDRARGQKSLFGDETVDEETGAEEEASLPEAEDWPRAQKLGAEKEVFGFYLTSHPLAEM 943

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ----QKKTRKGS-RIGWVTFSEPAKE 1026
               L K       E         + LA MV S +    +K ++ G+ R       +P   
Sbjct: 944  GTSLTKYAQNQTNELAEMDDRVEVILAGMVSSIKMAATKKPSKNGNTRYVNFDLEDPHGL 1003

Query: 1027 YEANFFP 1033
                 +P
Sbjct: 1004 VRCIMWP 1010


>gi|260906536|ref|ZP_05914858.1| DNA polymerase III subunit alpha [Brevibacterium linens BL2]
          Length = 1185

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1074 (35%), Positives = 566/1074 (52%), Gaps = 58/1074 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K   FVHL VH+ YS+L+GA  L +++    A    AIA TD   LF A +F  +A A
Sbjct: 1    MPKD-DFVHLHVHTEYSMLDGAARLTDLMAATKASGMSAIATTDHGYLFGAFDFWSQATA 59

Query: 65   AGIQPIIGCQLDIDMQDNLK------------MTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            AGI+PIIG +  +    + +                  +       + LL     G + L
Sbjct: 60   AGIKPIIGVEAYVTPGTDRRDKTRVKWRTDESQKRDDLSGGGAYTHMTLLSRNNTGMRNL 119

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             +  S   L     +  RI    L+   +EGLI  TG  SG I         + A     
Sbjct: 120  FKASSYASLDSVFSKWPRIDQDLLETY-SEGLIATTGCPSGEIQVRLRLGQYEEARAAAG 178

Query: 173  TFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             ++++FG D  YV L  H    ++     +++L+   ++PLVATN+  +  E D +AH+ 
Sbjct: 179  KYREMFGKDNYYVELMDHGLSIEKRVTKDLIRLSKEMDIPLVATNDLHYTHESDAKAHEA 238

Query: 231  LMAVAHSTVVSQKDRPRVTPD-------HYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
            L+A+   + + +    +           +YLK+ +EM ++FS+ PEA +NT+EIA +C  
Sbjct: 239  LLAIQSGSKLIEPTYDQGGSRFAFSGSGYYLKSGAEMRALFSEFPEACDNTLEIAEKCEV 298

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                 A  +P+F     +D    E + L  +   GLE R   G         D R++ D+
Sbjct: 299  SFDTSANYMPKFPCPPGED----ETSWLVKEVQTGLEYRYPGG------IPDDVRKQADY 348

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL+VI  M F GYFL+VADFI W+K N I VGPGRGSGAGS+ AYA+ ITD+DPL+  L 
Sbjct: 349  ELDVIISMGFPGYFLVVADFINWSKDNGIRVGPGRGSGAGSMVAYAMRITDLDPLKHGLF 408

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNPDR+SMPDFD+DF   RR EVI YV  KYG ERVA I+T+G+++ K AL+D  R
Sbjct: 409  FERFLNPDRVSMPDFDVDFDDRRRGEVIDYVTRKYGDERVAMIVTYGTIKTKMALKDSAR 468

Query: 464  ALQMPYSQVDRLCKL-IPNDPAHPVSLQAIA--------DDSRFREARLADPSVDRLLEI 514
             L  P+S  +RL K   P + A  + L  I         +   FRE   +DP      E 
Sbjct: 469  VLGKPFSMGERLTKALPPAEMAKDIPLADIENAESKRYNEAGEFREFVDSDPDARETFET 528

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            ++ +EGL R    HAAG+++   P+  ++P+ R  +    +TQF+    E  GLIK DFL
Sbjct: 529  AKGIEGLKRQWGVHAAGVIMSSDPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKMDFL 588

Query: 575  GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+ LT++  +++ +   R   + L  +  DD   Y LL+   TLG+FQL+  G+R  L 
Sbjct: 589  GLRNLTIISDAVENIKANRDYDLGLEHLDLDDRGAYDLLSRGDTLGVFQLDGGGLRALLR 648

Query: 634  GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQG 687
             M+PD  EDI A ++LYRPGP+  D+   +  RKNG +++  IHP ++  L++    T G
Sbjct: 649  LMKPDNFEDISATIALYRPGPMGADSHTNFALRKNGLQEVTPIHPELEEPLEDILGTTYG 708

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +IIYQEQVM IAQ ++GYSL +AD+LRRAMGKK K E+DKQ+  F  G  + G S+  A 
Sbjct: 709  LIIYQEQVMAIAQKVAGYSLGQADILRRAMGKKKKSELDKQQVGFFGGMKERGYSEAAAQ 768

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++++L  F+DY FNK+H+AAY ++SY TA++K HY  E++AA +T   DN +K+  +  
Sbjct: 769  ALWDILLPFSDYAFNKAHSAAYGLVSYWTAFLKAHYTAEYMAALLTSVGDNKDKLAIYLN 828

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLE 866
            + R+  I ++PP VN   + F      I + + A++ VG      I+EA      + S  
Sbjct: 829  ECRRLGITVLPPDVNDSALHFTPVGEDIRFGMGAVRNVGANVVDGIVEARGEKGAYTSFT 888

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF  +V S   N+R +ESL+ AG  D  G +R  L++  +        V++   N   ++
Sbjct: 889  DFLDKVPSHVCNKRTIESLIKAGGFDSLGQTRRSLVEVHEEAVDSVIGVKRQEANGQFDL 948

Query: 927  FAHEKGTFSDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            FA   G   +    + +          +   E+ ++G Y S HPL+  + +L        
Sbjct: 949  FAGLGGDDDEPSFSVAIPDRPEWEKKEKLAFERDMIGLYVSDHPLNGLEGVLAAESEASI 1008

Query: 984  EESVA----TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
             E V        G+ +++  M+    +K ++  G     VT  +   E E  FF
Sbjct: 1009 AEVVDPESHRHDGSQVKICGMITQVSRKVSKNSGKPYAIVTVEDLNAEVEVMFF 1062


>gi|297194911|ref|ZP_06912309.1| DNA polymerase III subunit alpha [Streptomyces pristinaespiralis ATCC
            25486]
 gi|197723064|gb|EDY66972.1| DNA polymerase III subunit alpha [Streptomyces pristinaespiralis ATCC
            25486]
          Length = 1179

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/1068 (30%), Positives = 534/1068 (50%), Gaps = 49/1068 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ +         IA++D  NL  A +F   A  
Sbjct: 1    MTKPP-FTHLHVHTQYSLLDGAARLKDMFEACNEMGMTHIAMSDHGNLHGAYDFFHTAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +  + A G   L  
Sbjct: 60   AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANATGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  ++GLI  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETISQW-SQGLIASTGCPSGELQTRLRLGQFDEALKSASEY 178

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG DR ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEAAAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             +     +S  DR R     Y    S       D  +A +         +  +       
Sbjct: 239  CIQTGKNLSDPDRFRFDGTGYYLK-STDEMYAIDSSDAWQEGCRNTLLVAQQVDTEGMFE 297

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             + +  + D      E    + + + G+E R   G        +D ++++++E++VI +M
Sbjct: 298  AKNLMPKFDIPEGHTEVTWFKEEVMRGMERRFPGG------IPEDRQKQVEYEMDVIIQM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAK   I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+ 
Sbjct: 412  RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471

Query: 472  VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DRL K +P D     +        S    ++    R     +P V ++++ ++ +EGL 
Sbjct: 472  GDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRAMYENEPDVKKVIDTAKGVEGLV 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++    +++ VP++      + +TQ++    E  GL+K DFLGL+ LT++
Sbjct: 532  RQMGVHAAGVIMSSETITEHVPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  +   +G+ +++  +P DD +T+ LL    TLG+FQ +   MR  L  M+PD  E
Sbjct: 592  DDAIKMVKSNKGIDLEMLSLPLDDPKTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFE 651

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQV 695
            DI A+ +LYRPGP+       Y  RKN +++I  IHP ++      L  T G+I+YQEQV
Sbjct: 652  DISAVSALYRPGPMGMNSHTNYALRKNKQQEITPIHPELEEPLREVLDVTYGLIVYQEQV 711

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+++GYSL EAD+LRR MGKK  +E+ K    F  GA + G S      ++++L  
Sbjct: 712  QKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFVLFQKGAREKGYSDEAIQALWDVLVP 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H+AAY ++SY TA++K ++P E++AA +T   D+ +K   +  + R+  I+
Sbjct: 772  FAGYAFNKAHSAAYGLVSYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNECRRMGIK 831

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            ++PP+VN    +F   GD+ I + L A++ VG      I++       + S  DF  +V+
Sbjct: 832  VLPPNVNESMSNFAAQGDDVILFGLTAVRNVGQNVVESIIKTRKAKGKYSSFPDFLDKVE 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +   N+R +ESL+ AGA D  G++R  L+   + +      V++       ++F      
Sbjct: 892  AVVCNKRTIESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVAVKRKEAEGQFDLFGGMGEE 951

Query: 934  FSDKI------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
             SD+               + S     E+ +LG Y S HPL   + +L         +  
Sbjct: 952  ASDEPGFGLDVEFSDV-EWDKSYLLAQEREMLGLYVSDHPLFGIEHVLSDKTDAAISQLT 1010

Query: 988  --ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1011 GGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|209517596|ref|ZP_03266435.1| DNA polymerase III, alpha subunit [Burkholderia sp. H160]
 gi|209502009|gb|EEA02026.1| DNA polymerase III, alpha subunit [Burkholderia sp. H160]
          Length = 1189

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1046 (38%), Positives = 599/1046 (57%), Gaps = 39/1046 (3%)

Query: 5    LE--KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            +     P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F Q+A
Sbjct: 1    MSPMSDPRFVHLRVHSEFSIADGIVRLDDIVAAAAKDGQGALALTDLGNAFGLVRFYQEA 60

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               G++PI GC + I   D+                ++LLV    GY  L EL+S+  L 
Sbjct: 61   RGKGVKPIAGCDVWITNPDDRDKP----------SRLLLLVKDRRGYLNLCELLSKASLT 110

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +Q +    +   WL+    EGL+ L+G   G I  A    + + A +    + K+F    
Sbjct: 111  NQYRGRAEVEAGWLESGLGEGLLALSGAQQGDIGLALAAGNEEAARRNARHWAKVFPGGF 170

Query: 183  YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ LQR           Q V LA + +LP+VAT+   F++ +D+ AH+  + ++   +++
Sbjct: 171  YIELQRCGLPGGEQYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILA 230

Query: 242  QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               R  R T + Y +++ EM  +F+D+P AL NTV+IA+RC+  L++  P LP F   + 
Sbjct: 231  NPRRQKRFTAEQYFRSQQEMAELFADIPSALANTVQIAKRCNLKLELGKPKLPLFPTPDG 290

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYF 357
              +    ++ L   +  GLE RLAQ    +         Y QRL+FE   I +M F GYF
Sbjct: 291  MSL----DDYLVQLSKEGLEKRLAQLYPDEAERDAQRATYYQRLEFECGTIIKMGFPGYF 346

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK N +PVGPGRGSGAGS+ AYAL +TD+DPLR++LLFERFLNP+R+SMPD
Sbjct: 347  LIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPD 406

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ  RD VI+YV+ KYG   V+QI TFG++ AKAA+RD+GR L + Y   D + K
Sbjct: 407  FDIDFCQHGRDRVIQYVKEKYGANAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAK 466

Query: 478  LIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP  P   V++   + ++   +E    +  V +LLE++Q++EGL R+   HA G++I  
Sbjct: 467  LIPFKPGKHVTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAP 526

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593
              L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +     
Sbjct: 527  GKLTDFCPLYTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 586

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L  +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALV+LYRPG
Sbjct: 587  QDWSLGQVPLDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPG 646

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  +  RK+G+E +    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+L
Sbjct: 647  PMDLIPSFCARKHGREVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 706

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK  EEM K +E F  GA+ NG+++  +  IF+L+ KFA YGFNKSHAAAYA+++
Sbjct: 707  RRAMGKKKPEEMAKHREIFAEGAAVNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLA 766

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-- 831
            Y TAW+K H+P EF+AA+M+L MD+ +K+K   +D     + ++PP VN     F+    
Sbjct: 767  YYTAWLKAHHPAEFMAANMSLAMDDTDKVKILFEDCLANKMAVLPPDVNLSAYRFEPVAE 826

Query: 832  -DNR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             D +    I Y L AIKG G      I+ A  +  F  + DFC+RVD + +NRR +E+L+
Sbjct: 827  TDGKRSRTIRYGLGAIKGSGQNAIEEILRAREEGRFIDIFDFCNRVDRRIVNRRTIEALI 886

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AGA D    +R QL+ S+    + A+    N       +F       S    L      
Sbjct: 887  RAGAFDTLHPNRAQLIASVSLAMEAAEQAAANALQ--AGLF-DMGDAPSQGHELIDEPEW 943

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                + + E+  LGFY SGH  D YK  +R+   +   E           +A ++VS + 
Sbjct: 944  PEKRKLQEEKAALGFYLSGHLFDAYKDEVRRFVRQKIGELKEGRDK---LVAGVIVSLRT 1000

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + T++G  +      +   + E   F
Sbjct: 1001 QMTQRGK-MLIALLDDGTGQCEVTVF 1025


>gi|170781777|ref|YP_001710109.1| DNA polymerase III subunit alpha [Clavibacter michiganensis subsp.
            sepedonicus]
 gi|169156345|emb|CAQ01493.1| DNA polymerase III alpha chain [Clavibacter michiganensis subsp.
            sepedonicus]
          Length = 1170

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1061 (36%), Positives = 561/1061 (52%), Gaps = 46/1061 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++ SFVHL VHS YS+L+GA  +  ++   A    PA+AITD  N+F A +F ++A A
Sbjct: 1    MPRNDSFVHLHVHSEYSMLDGAARVGPLVQAAAEQGMPAVAITDHGNVFGAFDFWKQAKA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGK---------TPFPTVPSIVLLVSTAEGYQRLIEL 115
            AG++PIIG +  I    +     + +         +       + +L  T EG   L  L
Sbjct: 61   AGVKPIIGTEAYITPGTHRGDRTRIRWGNGGQDDVSGSGAYTHLTMLAETTEGMHNLFRL 120

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             SR  L +      R+    L     +GLI  TG  SG +           A K    F+
Sbjct: 121  SSRASL-EGYYFKPRMDRELLSTY-AKGLIATTGCPSGEVQTRLRLGQYDEAVKAAADFR 178

Query: 176  KLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             +FG +  +  +  H  G +R   + + +LA    LPLVATN+  +  E D  +H  L+ 
Sbjct: 179  DIFGAENYFCEVMDHGLGIERRIMTDLHRLAKDLGLPLVATNDLHYTHEHDATSHAALLC 238

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVHAPIL 292
            V   T +   +R +   D +    ++ +   F D  EA +NT+ IA RC       A  +
Sbjct: 239  VQSGTTLDDPNRFKFDADEFYLKTAQQMRHLFRDHEEACDNTLLIAERCDVQFNESANYM 298

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            PR+   E +     E+     +   GL  R  +G       + D R+R D+E+ VIA+M 
Sbjct: 299  PRYPVPEGE----SEQTWFVKEVERGLVRRYPRGF------SDDVRKRADYEVGVIAQMG 348

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFL+VADFI W+K+N I VGPGRGSGAGS+ AYA+ ITD+DPL   LLFERFLNPDR
Sbjct: 349  FPGYFLVVADFINWSKENGIRVGPGRGSGAGSMVAYAMGITDLDPLEHGLLFERFLNPDR 408

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPDFD+DF   RR EVIRYV +KYG ERVAQI+T+G+++AK AL+D  R L  P+S  
Sbjct: 409  VSMPDFDVDFDDRRRGEVIRYVTDKYGDERVAQIVTYGTIKAKQALKDSSRVLGYPFSMG 468

Query: 473  DRLCKLIPN-DPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            D+L K +P       +              +   FRE    DP   ++ E +Q +E L R
Sbjct: 469  DKLTKAMPPAIMGKDIPLSGILDTEHPRYREAGDFREVLAMDPEAQKVFETAQGIENLKR 528

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
                HAAG+++   PL  ++P+ +  +    VTQF+    E  GLIK DFLGL+ LT++ 
Sbjct: 529  QWGVHAAGVIMSSEPLIDIIPIMKREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTIID 588

Query: 584  KSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             +L+ +   RG K+ L  +  DD   Y LL    TLG+FQL+   MR  L  M+PD  ED
Sbjct: 589  DALNNIESNRGEKLVLEDLGLDDQGAYDLLARGDTLGVFQLDGGPMRSLLRMMKPDNFED 648

Query: 643  IIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQVM 696
            I A+++LYRPGP+  ++   Y  RKNG ++I  IHP ++      L  T G+I+YQEQVM
Sbjct: 649  ISAVIALYRPGPMGANSHTNYALRKNGLQEITPIHPELEEPLREVLGTTHGLIVYQEQVM 708

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
             +AQ L+G++L++AD+LRRAMGKK K E+DKQ E F  G   NG S      ++++L  F
Sbjct: 709  SVAQKLAGFTLAQADLLRRAMGKKKKSELDKQFEGFSQGMKDNGYSMAAVKALWDILLPF 768

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            +DY FNK+H+AAY V+SY TA++K HYP E++AA +T   D+ +K+  +  + R+  I++
Sbjct: 769  SDYAFNKAHSAAYGVVSYWTAYLKAHYPAEYMAALLTSVGDSKDKMALYLNECRRMGIKV 828

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSK 875
            +PP VN     F      I + L A++ VG      +  A      F+S +DF  +V   
Sbjct: 829  LPPDVNESIGFFAAAGADIRFGLGAVRNVGANVVEALRGARTEQGAFESFDDFLKKVPLP 888

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI-FAHEKGTF 934
              N+R +ESL+ AGA D  G +R  LL+  + +   +   ++   N      F       
Sbjct: 889  VANKRTVESLIKAGAFDSLGDTRRALLEVHEGMIDASVSDKRAAMNGQVGFDFDSLWDEP 948

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT---IR 991
                 + +        +   E+ +LG Y S HPL   +  L K+   G  E +AT   + 
Sbjct: 949  QHARKVPERPEWAKRDKLAFEREMLGLYVSDHPLAGLEIPLAKLASTGIAELLATDASMD 1008

Query: 992  GNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANF 1031
            G  + LA ++ S Q +  R  G++ G V   +   E    F
Sbjct: 1009 GETVTLAGLLTSVQHRTARNSGNQYGMVQLEDFGGEITCMF 1049


>gi|148242424|ref|YP_001227581.1| DNA polymerase III subunit alpha [Synechococcus sp. RCC307]
 gi|147850734|emb|CAK28228.1| DNA polymerase III alpha subunit [Synechococcus sp. RCC307]
          Length = 1179

 Score =  734 bits (1894), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1051 (35%), Positives = 570/1051 (54%), Gaps = 35/1051 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L  HS YSLL+GA  L  ++ +      PA+A+TD   ++ A+E  +    AGI+P
Sbjct: 6    SFVPLHNHSDYSLLDGATQLPAMVQRAVDLGMPAVALTDHGVMYGAIELLKLCSKAGIKP 65

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG ++ +          +          +V+L     GY+ L++L S  +L     +  
Sbjct: 66   IIGNEMYVVNGSIDDPQPK----KERRYHLVVLAKNNVGYRNLVKLTSISHLRGMRGRGI 121

Query: 128  --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                 I    LQ+  +EGLI+ T    G I +A       VA +    ++ L GD  Y+ 
Sbjct: 122  FARACIDKHLLQQY-SEGLIVATACLGGEIPQAILRGRMDVARQVASWYRDLLGDDFYLE 180

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +Q H    DR   + ++ L+    + L+ATN++ +LS +D EAHD L+ V    ++S + 
Sbjct: 181  IQDHGSPEDRIVNTGLLTLSRELGIQLIATNDAHYLSRDDVEAHDALLCVLTGKLLSDEK 240

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R R T   Y+K+R EM  +F D   A  ++  ++     +  ++ +  +    + +    
Sbjct: 241  RLRYTGTEYIKSREEMERLFVDHLPAEVVQQALDNTMSVAEKVEDYDILGRYQMPRFPIP 300

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                  + L      GL  RL     A     + Y +R+  EL ++ +M F  YFL+V D
Sbjct: 301  EGHTPVSYLHEVTEQGLRQRLQ--LDADSSIDELYGERMRHELKIMEQMGFPTYFLVVWD 358

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +I++A+ N IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 359  YIRFARDNGIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDIDTDF 418

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C  RR EVI YV  +YG ++VAQIITF  + +KA L+DV R L +PY   DRL KLIP  
Sbjct: 419  CIARRSEVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVV 478

Query: 483  PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
               P  L  +    + +  FR+   +DP V R +++++++EG  +    HAAG+VI   P
Sbjct: 479  RGKPAKLAQMISEDSPEPEFRQKYESDPQVKRWVDMARRIEGTNKTFGVHAAGVVIAADP 538

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVD 597
            L +LVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT+++K+L+   A+ G + D
Sbjct: 539  LDELVPLQRN-NDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIEKTLELVSAEHGDRPD 597

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               +P DD ETY LL      GIFQLES+GMRQ +  ++P  +EDI ++++LYRPGP+D 
Sbjct: 598  PDQLPADDPETYQLLARGDLEGIFQLESTGMRQIVRDLKPSSLEDISSILALYRPGPLDA 657

Query: 658  --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  + NRK+G+E I      + P+L+ET G+++YQEQ+M+IAQ L+GYSL EAD+LRR
Sbjct: 658  GLIPKFINRKHGREAIEFADAKLQPILQETYGIMVYQEQIMRIAQDLAGYSLGEADLLRR 717

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK   EM K +  F+ GAS+ G+   +A  +F+ +  FA+Y FNKSH+ AY  ++YQ
Sbjct: 718  AMGKKKVSEMQKHRGIFVEGASQRGVDAKVADELFDQMVLFAEYCFNKSHSTAYGAVTYQ 777

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI 835
            TA++K HYPV ++AA +T+     EK++++  ++    I ++PP VN   +DF     RI
Sbjct: 778  TAYLKAHYPVAYMAALLTVNAGVTEKVQRYIANSNAMGIAVLPPDVNRSGIDFTPVGQRI 837

Query: 836  YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR-VDSKKLNRRVLESLVFAGALDC 893
             + L+A++ +G      ++ +   D PF SL + C R     +LNRR LESL+ +GALD 
Sbjct: 838  LFGLSAVRNLGDGAIHALIASRQSDGPFTSLAELCDRMAGIGQLNRRSLESLIHSGALDA 897

Query: 894  FGY--SRMQLLQSLDNIQKYAQWVEKNRTN---------KHENIFAHEKGTFSDKITLEK 942
                 +R QL+  LD +  +A    ++R +            +       T +       
Sbjct: 898  LEPDGNRAQLMADLDLLLDWATARARDRASGQGNLLDLLGGGSEAEAASATPASAPKAAS 957

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                  + +   E+ ++GFY S HPL   +   R +   G            +    MV 
Sbjct: 958  VPDYAPTEKLRLEKELVGFYLSDHPLKQLQDTRRLLMPVGLGSLSEQSDRQRVSTLVMVP 1017

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +   TRKG R+  +   +     EA  FP
Sbjct: 1018 EMRVVTTRKGDRMAILQIEDLTGSAEAVVFP 1048


>gi|58038565|ref|YP_190529.1| DNA polymerase III subunit alpha [Gluconobacter oxydans 621H]
 gi|58000979|gb|AAW59873.1| DNA polymerase III alpha subunit [Gluconobacter oxydans 621H]
          Length = 1140

 Score =  733 bits (1893), Expect = 0.0,   Method: Composition-based stats.
 Identities = 471/1037 (45%), Positives = 646/1037 (62%), Gaps = 26/1037 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL+ HS+YSL +GA+ +  ++   A +  PA+A+TD+ NLF ALEFS    +
Sbjct: 1    MSHA-DFVHLRNHSAYSLSQGAIRIPELVSLAAKNGMPAVALTDSGNLFGALEFSLYCRS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPI+GCQ+ +  +           P      +V+L    EG   L  L S  +L   
Sbjct: 60   NGVQPIVGCQISLPPRST--------KPGAMSEPLVVLARNEEGLANLQILSSEGFLNGD 111

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  + + +L +    GL +LTGG+ GPI++         A+  L   ++ F   + V
Sbjct: 112  P-ADPSVAVDFLCQ-HAAGLFLLTGGNRGPINKLILEEQKSEAQALLSRLEEAFRGNIAV 169

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     ++  ES ++ +A   ++PLVATN   F   E +EAHD L+ +A    ++++
Sbjct: 170  ELNRFGEAGEQEVESVLIPMADQMDIPLVATNECFFPKPEMHEAHDALLCIAQGRTIAEE 229

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR  V+P  + K  +EM ++F DLPEA +NT+ IA++C+       P+LP   +      
Sbjct: 230  DRWHVSPQAWFKTPAEMRAVFHDLPEACDNTLIIAQKCAVAACTRKPLLPICPKVR---E 286

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               EE  LR  A  GLE RL     A     + Y +RL  EL++IARM F GYFLIVADF
Sbjct: 287  GSTEEETLRAMAWEGLEKRL-DAINAGEEKRKLYSERLQVELDIIARMGFPGYFLIVADF 345

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK ++IPVGPGRGSGAGS+ AYALTITDIDP+ F LLFERFLNP+R+SMPDFDIDFC
Sbjct: 346  IQWAKAHDIPVGPGRGSGAGSLVAYALTITDIDPIPFGLLFERFLNPERVSMPDFDIDFC 405

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QDRRDEVIRYV+ +YG  RVAQIITFG LQAKAA+RDVGR L +PY  V+R+ +LIPN+P
Sbjct: 406  QDRRDEVIRYVREEYGGSRVAQIITFGKLQAKAAVRDVGRVLGLPYGMVNRVAELIPNNP 465

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A PVS   AI  + R +E R +D S+ RL+EI+ +LEGLYRHASTHAAG+VIGDR L +L
Sbjct: 466  AKPVSLSDAIEGEPRLQEMRDSDESLKRLMEIALQLEGLYRHASTHAAGVVIGDRELVEL 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD +SD+ VTQ+NMK++E+AGL+KFDFLGL TLT+L++ LDFL ++G+ VDLS IP
Sbjct: 526  VPLYRDPKSDMLVTQYNMKYVEQAGLVKFDFLGLTTLTILKRGLDFLKEQGITVDLSRIP 585

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD +T+ +L    T G+FQ E +GMR  L+ M    +ED+IA VSLYRPGP+ NI  Y 
Sbjct: 586  LDDAKTFEMLAKGDTAGVFQFEGAGMRDMLKQMAASRLEDLIAGVSLYRPGPMANIPDYC 645

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G E     H  I  +L+ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI 
Sbjct: 646  RRKHG-EPWEPPHEEIRDILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIA 704

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EM+KQ+  F  GA+  GI +  AV +F+L+A+FADYGFNKSHAAAYA++SYQTAWMK +
Sbjct: 705  AEMEKQRAIFTEGATARGIPQEKAVEVFDLMARFADYGFNKSHAAAYALVSYQTAWMKAN 764

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYY 837
            +PV FLA  M+L  +  +K+   CQ+AR+ NI ++P  +N    DF +         I Y
Sbjct: 765  HPVAFLAGCMSLAREKTDKLAALCQEARRMNIPVLPVDINKSLADFSIETLEDGRQGIRY 824

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            +L+AIK VG    + ++    D+PF  L DF  R D K LN+  LESL  AGA D     
Sbjct: 825  ALSAIKRVGAAAMQSVVACRGDRPFQDLTDFAERCDPKSLNKIQLESLAKAGAFDSLLKE 884

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  +  S D + + AQ   + +      +F    G   + + L +        R   E  
Sbjct: 885  RHIVFSSADILLRRAQARAQEQQMGQAGLFGGA-GQEREILRLNEGRPWPDFERLSLEAS 943

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRI 1015
             +GF+ S HPLD Y+ +LR++G+          +     +++A  VV ++++ TR G ++
Sbjct: 944  AIGFHMSAHPLDAYRSVLRRLGVTPSNALENAAKTGTTRVKIAGCVVDRKERPTRTGKKM 1003

Query: 1016 GWVTFSEPAKEYEANFF 1032
             WV  S+     E   F
Sbjct: 1004 AWVNLSDSGGGCEVTLF 1020


>gi|167835967|ref|ZP_02462850.1| DNA polymerase III subunit alpha [Burkholderia thailandensis MSMB43]
          Length = 1095

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1044 (38%), Positives = 602/1044 (57%), Gaps = 38/1044 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A  
Sbjct: 1    MSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   AGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +  +WL+     GL+ L+G   G I  A    +   A +    + ++F    Y+
Sbjct: 110  YRGRAELDANWLEGDLAAGLLALSGAQQGDIGLALAAGNEAAARRHAQRWSQVFPGGFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH          Q V +A    LP+VAT+   +++ +D+ AH+  + ++   +++  
Sbjct: 170  ELQRHGQPGAEAYIQQAVTIAAELMLPVVATHPLQYMTADDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T + + + + +MV++F+DLP AL NTVEIA+RC+  L++  P LP F   +   
Sbjct: 230  RRQKRFTTEQFFRTQDDMVALFADLPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GLE    +L      +      Y QRLDFE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSQEGLEKRLVQLYPDEAEREAQRDKYSQRLDFECGTIKKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++   +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +       
Sbjct: 526  LTDFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKAD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+      ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVEYPDMRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM + +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMAQHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D     I ++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCDVNGIAVLPPDINQSHYRFEPVAQAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  I Y L AIKG G      I+ A  +KPF  L DFC R+D + +NRR +E+L+ A
Sbjct: 826  GKRSCTIRYGLGAIKGSGQNAIEEILRAREEKPFADLFDFCERIDRRIVNRRTIEALIRA 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GALD    +R QLL S+    + A+    N       +F    G  + +  L      + 
Sbjct: 886  GALDSLHANRAQLLASVPLAMEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDD 942

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              R + E+  LGFY SGH  D Y+  +R+   +   E           +A ++ S + + 
Sbjct: 943  KRRLQEEKSALGFYLSGHLFDAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQM 999

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T++G  +      +   + E   F
Sbjct: 1000 TQRGK-MVIALLDDGTGQCEVTVF 1022


>gi|229820885|ref|YP_002882411.1| DNA polymerase III, alpha subunit [Beutenbergia cavernae DSM 12333]
 gi|229566798|gb|ACQ80649.1| DNA polymerase III, alpha subunit [Beutenbergia cavernae DSM 12333]
          Length = 1190

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1076 (33%), Positives = 550/1076 (51%), Gaps = 56/1076 (5%)

Query: 5    LEKS---PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            +  +     FVHL VH+ YS+L+GA  + +++ ++ A  Q A+AITD   LF A +F ++
Sbjct: 1    MPSAAPGSDFVHLHVHTDYSMLDGAARVPDLVAEVKAQGQSAVAITDHGYLFGAYDFWKR 60

Query: 62   ACAAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            A AAGI+PIIG +  +                                + L+  T  G  
Sbjct: 61   ARAAGIKPIIGLEAYVTPGTARQDRSRVRWGERDQVGDDVAGGGAYTHLTLVSETTAGMH 120

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L  + S   L +      RI    +    ++GLI  +G  SG I           A + 
Sbjct: 121  NLFRMGSLASL-EGYYFKPRIDRELMTRY-SDGLIAFSGCPSGEIQTRLRLGQWDEAVRA 178

Query: 171  LLTFKKLFG-DRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
                + +FG D  Y+ L  H    ++    Q+++LA     PLVATN+  ++ +ED  AH
Sbjct: 179  AAELQDIFGKDSFYIELMDHSLELEKRVAKQLMELAAHLGAPLVATNDLHYVRDEDEHAH 238

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            ++L+ V  ++++S     +      L      V   +++        E       I +  
Sbjct: 239  ELLLCVQSNSLMSDPTYEQGGNRFALSGDGYYVRSSAEMRRLFAELPEACDNTLAIAERC 298

Query: 289  APILP----RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                     R++        ++E +    +   GL  R  +         +D  Q+  +E
Sbjct: 299  EVEFTEQVGRYMPHFPVPPGEDEISLFVKEVERGLVSRFGEHV------PEDVAQQAKYE 352

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            + VI    ++GY+L+VADFI WAK+N+I VGPGRGSGAGS+ AYA+ IT++DPL   L+F
Sbjct: 353  IEVITSKGYAGYYLVVADFINWAKRNSIRVGPGRGSGAGSMAAYAMGITELDPLSNGLIF 412

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+RMS+PDFDIDF + RR EVIRYV  KYG E VA I+T+G+++AK +L+D GR 
Sbjct: 413  ERFLNPERMSLPDFDIDFDERRRGEVIRYVTQKYGEENVASIVTYGTIKAKQSLKDSGRV 472

Query: 465  LQMPYSQVDRLCKLIPND-PAHPVS--------LQAIADDSRFREARLADPSVDRLLEIS 515
            L  P++  ++L K +P       VS         +  A+ + FR     DP   ++ + +
Sbjct: 473  LGYPFAMGEKLTKAMPPALMGKDVSLSGIFDPEDKRYAEAAEFRTLYETDPDARKVTDAA 532

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + +EGL R    HAAGI+I   PL  ++P+ R       +TQ +    E  GL+K DFLG
Sbjct: 533  KGIEGLKRQWGVHAAGIIISSEPLIDVIPIMRRDSDGAIITQIDFPAGEDLGLVKMDFLG 592

Query: 576  LKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L+ LT+L+ +L  +       V +  +P DD  TY LL    TLG+FQL+ SGMRQ L  
Sbjct: 593  LRNLTILEDALVNIGINGKPDVVIEDVPLDDAATYELLGRAETLGVFQLDGSGMRQLLRL 652

Query: 635  MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGV 688
            M+PD  EDI A+ +LYRPGP+  ++   Y  RKNG + IV IHP     ++ +L  T G+
Sbjct: 653  MRPDNFEDISAVGALYRPGPMGANSHTNYALRKNGLQDIVPIHPELAGPLEEVLGPTYGL 712

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQVM IAQ L+GY+L EAD+LRRAMGKK KE +DK+   F +G  + G S+     
Sbjct: 713  IVYQEQVMAIAQHLAGYTLGEADLLRRAMGKKKKEILDKEYVPFSNGMKERGYSEGAIKA 772

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++++L  F+DY FNK+H+AAY +ISY TA++K +Y VE++AA +T   D+ +K   +  +
Sbjct: 773  LWDVLVPFSDYAFNKAHSAAYGLISYWTAYLKVNYRVEYMAALLTSTRDDKDKSALYLNE 832

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLED 867
             R   I ++PP VN    +F      I + LAA++ VG      I +A  +   F S  D
Sbjct: 833  CRHLGITVLPPDVNDSAANFTPVGEDIRFGLAAVRNVGANVVEAIAKAREEKGAFTSFTD 892

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F  +V +   N+R +ESLV AGA D  G++R  LL   +        V++       ++F
Sbjct: 893  FLDKVPAVVCNKRTIESLVKAGAFDALGHTRRSLLLVHEQAVDAVIGVKRKEAEGQFDLF 952

Query: 928  AHEKGTFSD--------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
            A   G   D         + +      +   +   E+++LG Y S HPL   + +L    
Sbjct: 953  ASLGGPADDAAGSVASFAVEIPDLPEWDKKQKLSFERQMLGLYVSDHPLAGVEHVLTAAA 1012

Query: 980  IKGYEESV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   +   A   G+ + +A ++ S Q K +++G+    V   +     E  FF
Sbjct: 1013 DVSVATLLADEARPDGSTVTIAGLITSLQVKVSKQGNPWAAVVIEDLEGSIEVMFF 1068


>gi|319948506|ref|ZP_08022638.1| DNA polymerase III subunit alpha [Dietzia cinnamea P4]
 gi|319437803|gb|EFV92791.1| DNA polymerase III subunit alpha [Dietzia cinnamea P4]
          Length = 1181

 Score =  733 bits (1891), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/1063 (29%), Positives = 520/1063 (48%), Gaps = 48/1063 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ +S+L+G   ++ +  + +    PA+ +TD  N++ A +F ++A   G++PI
Sbjct: 5    FVHLHNHTEFSMLDGMAQIDPLFAEASRLGMPAVGMTDHGNMYGASDFYKQAKKTGVKPI 64

Query: 71   IGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            IG +  +  +   +                        + ++   A G + L  L S   
Sbjct: 65   IGIEAYVAPESRFEKKRILWGEKHQKSDDVAGSGAYTHMTMVAENATGLRNLFRLSSLAS 124

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179
               Q  +  R+    L E  +EG+I  +G  SG I         + A +    ++ +FG 
Sbjct: 125  YEGQLGKWARMDAEILAEY-SEGIIATSGCPSGEIQTRLRLGHIKEAYEAAEKWQSIFGK 183

Query: 180  DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            D  ++ L  H    +R     +++L     +P + TN+  +++ E   AH+ ++ V    
Sbjct: 184  DNFFLELMDHGIDIERRVREDLLKLGRDLGMPPLVTNDCHYVTREQAHAHEAMLCVQTGK 243

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
             ++ ++R +   D Y    ++ +    D          +                  + K
Sbjct: 244  TLADENRFKFDGDGYYLKSAQEMRAQWDSEVPGACDNTLWIAERVQPYDDIWTPRDRMPK 303

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  + E+  L  +   GL+ R   G        Q+Y +R +FEL VI    + GYFL
Sbjct: 304  FPVPEGETEDTWLAKEVHKGLQWRFPDGV------PQEYIERANFELEVIKGKGYPGYFL 357

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D I+ A+   I VGPGRGS AG++ AYAL IT+IDP+   LLFERFLNP+R S PD 
Sbjct: 358  VVGDLIEHARSIGIKVGPGRGSAAGALVAYALKITNIDPIEHGLLFERFLNPERPSAPDI 417

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQVDRLC 476
            DIDF   RR E+IRY  +K+G +++AQ+ITFG+++ KAA++D  R    Q  Y+  DR+ 
Sbjct: 418  DIDFDDRRRGEMIRYASDKWGADKIAQVITFGTIKTKAAIKDAARVNFGQPGYAIADRIT 477

Query: 477  KL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
            K   P   A  +          +   + +  R+    DP V R+ + ++ LEG+ R A  
Sbjct: 478  KALPPAIMAKDIPLSGITDPKHERYGEAAEVRQLLETDPDVKRIYDTARGLEGMVRQAGV 537

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            HA  +++   PL  ++PM++  +    +T ++    E  GL+K DFLGL+ LT++   L+
Sbjct: 538  HACAVIMSSEPLLDVIPMWKRAQDGAIITGWDYPSCEDIGLLKMDFLGLRNLTVIGDCLE 597

Query: 588  FLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             +   RG ++DL  +  DD  TY LL    TLG+FQL+S GMR+ L+ M+P    DI+A 
Sbjct: 598  NIKLNRGEEIDLDTLSTDDQATYDLLARGDTLGVFQLDSGGMRELLKRMKPTGFNDIVAA 657

Query: 647  VSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQVMQIAQ 700
            ++LYRPGP+       Y +RKNGK+++V IHP ++      L ET G+I+YQEQ+M I++
Sbjct: 658  LALYRPGPMGMGTHWNYADRKNGKQELVPIHPELEEPLREILGETHGLIVYQEQIMAISR 717

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
             L+GY+  EAD  R+AMGKK  E +  + E+F  G  + G SK     ++  +  FA Y 
Sbjct: 718  ELAGYTAGEADGFRKAMGKKKAEVLAAEYEKFSGGMFERGFSKEAVDALWGTIEPFASYA 777

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSHAA Y ++S+ T ++K +YP E++AA +T   D+ +K   +  + RQ  I+++PPS
Sbjct: 778  FNKSHAAGYGLVSFWTGYLKANYPAEYMAALLTSVGDDKDKAALYLSNCRQMGIKVLPPS 837

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNR 879
            VN    +F      I + L A++ VG      I+ A  A   F    D+ +++D     +
Sbjct: 838  VNESLTNFASVGKDIRFGLGAVRNVGAQVVDSIVAAREAKGEFTDFSDYLAKIDQTACTK 897

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--- 936
            +V ESL+ AGA D  G+ R  L     +  +     +K       ++F     T +D   
Sbjct: 898  KVTESLIKAGAFDSLGHPRKGLFLVHADAVESVMSTKKAEAVGQFDLFGGGDDTAADTGF 957

Query: 937  ----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATI 990
                 + +      ++  +   E+ +LG Y SGHPLD  +  L                 
Sbjct: 958  GDVFAVRVPD-EEWDTKQKLALEREMLGLYVSGHPLDGLEAALEAKTDTNIATIHEGELP 1016

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G  + +  ++    ++  + G     VT  +     E  FFP
Sbjct: 1017 HGTAVTIGGIISGVDRRVNKNGEPWAIVTIEDFNGSVEVLFFP 1059


>gi|254466532|ref|ZP_05079943.1| DNA polymerase III, alpha subunit subfamily, putative
            [Rhodobacterales bacterium Y4I]
 gi|206687440|gb|EDZ47922.1| DNA polymerase III, alpha subunit subfamily, putative
            [Rhodobacterales bacterium Y4I]
          Length = 1148

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 486/1038 (46%), Positives = 664/1038 (63%), Gaps = 51/1038 (4%)

Query: 28   SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTN 87
             L  + D       PAIA+TDTNNLFSALEFS  A  AG+QPIIGCQ+D+          
Sbjct: 2    RLKKLPDLCKKHGMPAIAVTDTNNLFSALEFSVSASGAGVQPIIGCQVDL----RFAEPA 57

Query: 88   QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIML 147
             G+ P P  P +VLL  +  GY+ L++L S +YL  QG +   + L  L+   + G+I L
Sbjct: 58   PGERPKPPAP-LVLLAQSEAGYEHLMKLNSCLYLR-QGGELPHVTLEELESY-SGGVICL 114

Query: 148  TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY------DRYRESQVV 201
            +GG  GP+ R         AE  +   K +F DRLYV LQRH G       ++  E   V
Sbjct: 115  SGGPDGPVGRLLQMGQRPAAEALMQRLKAIFPDRLYVELQRHPGEHGQPEAEKQTERGHV 174

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEM 260
            ++AY   LPLVATN+  F   E +EAHD ++ +A    V Q + R R+T  HY K++ EM
Sbjct: 175  EMAYAMGLPLVATNDVYFPDTEMFEAHDAMICIAEGAYVDQVEPRRRLTAQHYFKSQEEM 234

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
            V++F+DLPEA+ENTVEIARRC+F+            +        +E  ELR  A  GL+
Sbjct: 235  VALFADLPEAIENTVEIARRCAFMAY--------RRDPILPKFADDEVAELRRIANEGLQ 286

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
             RLA   I      ++Y++RLDFEL +I  M F GYFLIVADFIQWAK ++IPVGPGRGS
Sbjct: 287  QRLA--VIPHAVSVEEYQERLDFELGIIEGMGFPGYFLIVADFIQWAKDHDIPVGPGRGS 344

Query: 381  GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
            GAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDIDFC DRR+EVI+YVQ KYG 
Sbjct: 345  GAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIKYVQEKYGR 404

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA-IADDSRFR 499
            ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL KLIP +   P+S+   + ++ R  
Sbjct: 405  DKVGQIITFGALLSKAAVRDMGRVLQMPYGQVDRLSKLIPVEGVKPMSIADALKEEPRLS 464

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
            E    +P VDRLL   Q++EGL R A THAAG+VIGDRPL  LVP+YRD RSD+P TQFN
Sbjct: 465  EEARNEPVVDRLLTYGQQVEGLLRSAGTHAAGVVIGDRPLDALVPLYRDPRSDMPATQFN 524

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL------------------SLI 601
            MKW+E+AGL+KFDFLGLKTLT++Q ++D + Q G  + +                  + I
Sbjct: 525  MKWVEQAGLVKFDFLGLKTLTVIQNAMDLIFQSGRDLHIAADGTQLYEPPEGAENQINAI 584

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD  TY L +   T+ +FQ+ES+GM  AL+ M+P CIEDI+ALV+LYRPGP++NI VY
Sbjct: 585  PLDDKVTYDLYSRAKTVAVFQVESTGMMDALKRMKPTCIEDIVALVALYRPGPMENIPVY 644

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               KNG+ +I S+HPLID +L+ETQG+I+YQEQVMQIAQ+++ Y+L  AD+LRRAMGKKI
Sbjct: 645  CEVKNGQREITSVHPLIDHILEETQGIIVYQEQVMQIAQVMANYTLGGADLLRRAMGKKI 704

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            KE MD ++ +F  GA++NG+ K  A  +F+LL KFA+YGFNKSHAAAYAV+SYQT W+K 
Sbjct: 705  KEAMDAERPKFEKGAAENGVDKKKASEVFDLLEKFANYGFNKSHAAAYAVVSYQTGWLKA 764

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
            ++PVEF+A  M  ++   +K+  + ++ ++   ++ +PP +N     F V +  + Y+L 
Sbjct: 765  NHPVEFMAGVMNCDIHLTDKLAIYFEEVKKGLGLKYVPPCINRSLATFNVVNGELVYALG 824

Query: 841  AIKGVGTTTARHIMEASA----DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            A+K VG    R + EA      ++PF ++ DF  RV+ KK+ +R LE L  AGA D    
Sbjct: 825  ALKNVGLDVMRLVAEARKENGYERPFVNVFDFARRVNLKKVGKRPLEMLARAGAFDQLDS 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R ++ +SL  +  Y+  V   R +   ++F  E G    +  L        + R   E 
Sbjct: 885  NRRRVFESLGALVDYSAAVHDQRNSSQVSLFG-EAGEDLPEPRLPSVPDWLPAERLSEEF 943

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSR 1014
            + +GFY SGHPLD Y P L++  +   +E  A         ++A +V  +Q++K+ +G+R
Sbjct: 944  KAIGFYLSGHPLDDYMPALKRKDVMTLDEVTAKAERGPFMAKMAGVVAGRQERKSARGNR 1003

Query: 1015 IGWVTFSEPAKEYEANFF 1032
              +   S+P+  +E   F
Sbjct: 1004 FAFAQLSDPSGAFEVTLF 1021


>gi|300726853|ref|ZP_07060283.1| DNA polymerase III, alpha subunit [Prevotella bryantii B14]
 gi|299775966|gb|EFI72546.1| DNA polymerase III, alpha subunit [Prevotella bryantii B14]
          Length = 1235

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1116 (33%), Positives = 551/1116 (49%), Gaps = 103/1116 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62
             FVHL VH+ YS+L+G   +  ++DK   D    +AITD   +F   EF           
Sbjct: 3    DFVHLHVHTHYSILDGQSKIPRLVDKAIQDGMKGMAITDHGVMFGIKEFVDYCSGVNKGR 62

Query: 63   CAAGI---QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
               G+   +PIIGC++ +          +      +   +++L    EGY+ LI+LVSR 
Sbjct: 63   KKEGLEPFKPIIGCEMYVAHHRLEDKVKENG--DQSGYHLIVLAKNYEGYKNLIKLVSRS 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            + +D      R     L++   EGLI+ +   +G +           A + L  + ++FG
Sbjct: 121  W-VDGYYYRPRTDRVDLEKYH-EGLIVCSACIAGEVPAKIIKGDIAGAREALEWYHRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            +  Y+ LQRH   D             +     ++  A  + + L+ +N+  F  +E  E
Sbjct: 179  EDYYLELQRHEVKDPVIMANREAFPLQQKANKVLIDFAKEYGIKLICSNDVHFEDKETAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++    +    R R +   + K R EM  +FSD+PEAL NT++I  +      
Sbjct: 239  AHDHLLCLSTGKDLDDPMRMRYSKQEWFKTREEMNEVFSDVPEALSNTLDILDKVEMYSI 298

Query: 287  VHAPILPRFIEKECDDIQ------------------------------------------ 304
             H PI+P F   E    +                                          
Sbjct: 299  DHGPIMPFFPIPESFGTEDDIRKKFSTEDLLKEFSSDENGDNTLPREDGLKKIESLGGWD 358

Query: 305  -----KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 K E   L   A  G +              Q+ ++ ++FEL+V+  M F GYFLI
Sbjct: 359  KVYRIKYEAEYLAKLAYDGAKKLYGDPL------PQNVKEHVNFELHVMKTMGFPGYFLI 412

Query: 360  VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V+DFI+ A++   + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD 
Sbjct: 413  VSDFIRAAREELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R +V+R+V +KYGHE  A IIT+ S+  K +++DV R  ++P  + + LCK 
Sbjct: 473  DTDFDDDGRGKVLRWVMDKYGHENCAHIITYSSMATKNSIKDVARVEKLPLDRSNALCKA 532

Query: 479  IPNDPAHPVSLQ---AIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP+     + +    AI      REA  + DP     ++ ++ LEG  R    HA G +I
Sbjct: 533  IPDRLPDGLKMNLTNAIKCTPELREAESSSDPRERNTIKYAKMLEGTVRGTGIHACGFII 592

Query: 535  GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               P+S  VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ L+++   +
Sbjct: 593  CRDPISNWVPVSTADDPDFPGLKTAVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVV 652

Query: 590  AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             Q   V+VDL  IP DD  TY L     T+G FQ ES+GM++ L  ++P   ED+IA+ +
Sbjct: 653  KQTTGVEVDLDNIPIDDELTYKLYQEGRTIGTFQFESAGMQKYLRELKPTVFEDLIAMNA 712

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RKNG+E+I    P ++  LK+T G+ +YQEQVM +++ L+ ++  
Sbjct: 713  LYRPGPMDYIPSFIARKNGREEIKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLASFTRG 772

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E+D LR+AMGKK K  +D+ K +F+    +NG    +   I+    KFA Y FNKSHA  
Sbjct: 773  ESDALRKAMGKKKKAIVDQMKPKFLKQGQENGHDPKVLEKIWGDWEKFASYAFNKSHATC 832

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ ++YQTA+MK HYP EF+AA MT     + +I K  ++ +   IQ + P VN     F
Sbjct: 833  YSWVAYQTAYMKAHYPAEFMAALMTRRFSQITEITKLMEECKSMGIQTLGPDVNESYSGF 892

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V D   I + L+AIKG+G   A  I+     + P+ S+ DF  RVD   +NR+  ESL 
Sbjct: 893  GVNDKGEIRFGLSAIKGMGGNAAASIVAERQKNGPYKSIFDFAERVDFGSVNRKAFESLA 952

Query: 887  FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
             +G  D FG  R Q   +       LD + KY Q  +  +     ++F            
Sbjct: 953  LSGGFDGFGLRREQYFGTSAKGEVFLDTLVKYGQLFQAEQMEAQTSLFGGADAIEIATPP 1012

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIR 996
            + +    ++  +   E+ ++G Y S HPLD Y  +L  M      E        +  +I 
Sbjct: 1013 IPEGEQWSTIEKLNRERDLVGIYISAHPLDDYSIVLNSMCNTHCTEIEDKAELAKKEDIV 1072

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            L  +V   + K T+ G   G+VT  +     E  FF
Sbjct: 1073 LGGIVTGVKSKFTKNGKPCGFVTIEDFEGSGELAFF 1108


>gi|328907421|gb|EGG27187.1| DNA polymerase III subunit alpha [Propionibacterium sp. P08]
          Length = 1190

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/1077 (31%), Positives = 539/1077 (50%), Gaps = 59/1077 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S  FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +  
Sbjct: 1    MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59

Query: 65   AG------IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVL 101
                    ++PIIG +  +                    D      +  +       + +
Sbjct: 60   YDGDQNPLVKPIIGIEAYVAPSTRTSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                 EG   L  L S     +      R+    + +   +G+I  TG  SG +      
Sbjct: 120  WAKDPEGLHNLFRLSSLAS-YEGYYMKPRMDRELMSQYP-DGIIASTGCPSGEVQTRLRL 177

Query: 162  NSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
               + A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S +
Sbjct: 178  GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLRLAKKLDIPLLVTNDSHY 237

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            ++E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ + 
Sbjct: 238  VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDYPEACDNTLLLT 297

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
                   +V   +         +   + +E+ LR K   GL+ +            ++  
Sbjct: 298  EMIGSYDEVFKHVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVL 349

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RL+ EL+VI  + FS YFLIV+D    A+   +PVGPGRGS AGS+ AY   I  I+PL
Sbjct: 350  ERLETELSVIEPLGFSSYFLIVSDICSAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPL 409

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               LLFERFLNP+R++ PD D+DF   +RD+VI YV  KYG E  +Q+ TFG ++AKAA+
Sbjct: 410  EHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTYKYGAEYTSQVNTFGKIKAKAAV 469

Query: 459  RDVGRALQMPYSQVDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVD 509
            +D  R L  P+S  D++ K +P D     V        S +   +   FR+    +P V 
Sbjct: 470  KDANRILGYPFSLGDKITKAMPPDVMGKGVPLDKIFDPSHERYGEGQEFRQLVADNPDVA 529

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            ++++ ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ GL+
Sbjct: 530  KVVDTARGLEGLIRGTGVHACAFILSSAPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLM 589

Query: 570  KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K DFLGL+ L ++   +  +   RG+ VDL  +  DD  TY +L    TLG+FQL+ + M
Sbjct: 590  KMDFLGLRNLGIMDHCIKIIKDNRGIDVDLKDLALDDTATYEMLARGDTLGVFQLDGTAM 649

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPML 682
            R  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP +    D +L
Sbjct: 650  RSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEIL 709

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
              T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G S
Sbjct: 710  APTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYS 769

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
                  +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +K+
Sbjct: 770  DDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKM 829

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861
              +  D R  +I ++PP VN   ++F      I + L A++ VG      I+ A   + P
Sbjct: 830  AMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRAREENGP 889

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
                  F  RV     N+R++ESL+ AGA D  G+SR  L+   +        +++N+ N
Sbjct: 890  APDFFTFLDRVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAIYEQAVDAVIDIKRNQVN 949

Query: 922  KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
              +++F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L   
Sbjct: 950  GQDDLFGMGDDSQPSQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAE 1009

Query: 979  GIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  E V           +A MV    ++ T+ G     VT  +         FP
Sbjct: 1010 SDISVAELVNPEAHHEGRYTVAGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066


>gi|313837783|gb|EFS75497.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL037PA2]
 gi|314927335|gb|EFS91166.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL044PA1]
 gi|314972435|gb|EFT16532.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL037PA3]
          Length = 1219

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/1073 (31%), Positives = 536/1073 (49%), Gaps = 58/1073 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-- 66
              FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +      
Sbjct: 33   SDFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGD 92

Query: 67   ----IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVLLVST 105
                ++PIIG +  +                    D      +  +       + +    
Sbjct: 93   QNPLVKPIIGIEAYVAPSTRTSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTMWAKD 152

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
             EG   L  L S     +      R+    + +   +G+I  TG  SG +         +
Sbjct: 153  PEGLHNLFRLSSLAS-YEGYYMKPRMDRELMSQYP-DGIIASTGCPSGEVQTRLRLGQFE 210

Query: 166  VAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEE 223
             A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S +++E+
Sbjct: 211  EACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLRLAKKLDIPLLVTNDSHYVTED 270

Query: 224  DYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
              +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ +     
Sbjct: 271  QADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDYPEACDNTLLLTEMIG 330

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
               +V   +         +   + +E+ LR K   GL+ +            ++  +RL+
Sbjct: 331  SYDEVFKHVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVLERLE 382

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             EL+VI  + FS YFLIV+D    A+   +PVGPGRGS AGS+ AY   I  I+PL   L
Sbjct: 383  TELSVIEPLGFSSYFLIVSDICSAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPLEHGL 442

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R++ PD D+DF   +RD+VI YV  KYG E  +Q+ TFG ++AKAA++D  
Sbjct: 443  LFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTYKYGAEYTSQVNTFGKIKAKAAVKDAN 502

Query: 463  RALQMPYSQVDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLE 513
            R L  P+S  D++ K +P D     V        S +   +   FR+    +P V ++++
Sbjct: 503  RILGYPFSLGDKITKAMPPDVMGKGVPLDKIFDPSHERYGEGQEFRQLVADNPDVAKVVD 562

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ GL+K DF
Sbjct: 563  TARGLEGLIRGTGVHACAFILSSAPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLMKMDF 622

Query: 574  LGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL+ L ++   +  +   RG+ VDL  +  DD  TY +L    TLG+FQL+ + MR  L
Sbjct: 623  LGLRNLGIMDHCIKIIKDNRGIDVDLKDLALDDTATYEMLARGDTLGVFQLDGTAMRSLL 682

Query: 633  EGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQ 686
              M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP +    D +L  T 
Sbjct: 683  RLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEILAPTY 742

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
             +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G S    
Sbjct: 743  HLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYSDDAI 802

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +K+  + 
Sbjct: 803  QTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKMAMYL 862

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865
             D R  +I ++PP VN   ++F      I + L A++ VG      I+ A   + P    
Sbjct: 863  ADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRAREENGPAPDF 922

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
              F  RV     N+R++ESL+ AGA D  G+SR  L+   +        +++N+ N  ++
Sbjct: 923  FTFLDRVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAIYEQAVDAVIDIKRNQVNGQDD 982

Query: 926  IFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
            +F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L       
Sbjct: 983  LFGMGDDSQPSQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAESDIS 1042

Query: 983  YEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              E V           +A MV    ++ T+ G     VT  +         FP
Sbjct: 1043 VAELVNPEAHHEGRYTVAGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1095


>gi|82946509|dbj|BAE51373.1| DNA polymerase III, alpha subunit [Magnetospirillum magneticum AMB-1]
          Length = 1118

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 481/1011 (47%), Positives = 661/1011 (65%), Gaps = 31/1011 (3%)

Query: 41   QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
             PA+ ITDT NLF ALEFS     AGIQPI+G Q+ I  +D    +  G+ P P    +V
Sbjct: 1    MPAVGITDTANLFGALEFSTSCSDAGIQPIVGAQIAIRREDG-GPSKDGRKPEPDT--LV 57

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            LL     GY  L++LVS+ +L     ++ ++ L  L E  ++GLI+LTGG +GP+ R   
Sbjct: 58   LLCQNEAGYLNLLKLVSKAFLETDAGETPQVTLHDL-ETRSDGLIVLTGGPAGPVGRLLA 116

Query: 161  FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLF 219
               ++ AE  L    + F  R YV L RH    +   E  +V LAY H+LPLVATN + F
Sbjct: 117  DGQTEKAEIVLARLARAFAGRCYVELMRHNLEVEDRIEPLLVSLAYKHDLPLVATNEAFF 176

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
                 YEAHD L+ +A    +SQ +R R+TP+HY K+  EM ++F+DLPEA +NT+ IAR
Sbjct: 177  ADRGMYEAHDALVCIAEGAYISQDERRRLTPEHYFKSPEEMRALFADLPEACDNTLVIAR 236

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--- 336
            RC+F          + I          E   LR K   GLE RL +    +G    +   
Sbjct: 237  RCAF-----GVAKRKPILPPYRMDGLTEAEVLRKKTWEGLEARLEKHVFKEGMTDDEKEH 291

Query: 337  ----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
                YR+R++FELNVI  M F GYFLIV+DFIQW+K   IPVGPGRGSGAGS  A+ALTI
Sbjct: 292  AAKPYRERIEFELNVIEEMGFPGYFLIVSDFIQWSKAQEIPVGPGRGSGAGSAVAWALTI 351

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            TD+DPLR+ LLFERFLNP+R+SMPDFDIDFCQDRR+E IRYVQ KYG+ +VAQIITFG L
Sbjct: 352  TDLDPLRWGLLFERFLNPERVSMPDFDIDFCQDRREETIRYVQGKYGYSQVAQIITFGKL 411

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRL 511
            QA+A LRDVGR LQMPY QVDR+CKL+PN+PA+P++  QA+  +   +E +  D +V  L
Sbjct: 412  QARAVLRDVGRVLQMPYGQVDRICKLVPNNPANPMTLEQALESEPLLKEQKERDEAVSHL 471

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
            ++++ KLEGLYRHASTHAAG+VIGDRPL +LVP+YRD RSD+PVTQFNMKW+E AGL+KF
Sbjct: 472  IDLAMKLEGLYRHASTHAAGVVIGDRPLDELVPLYRDPRSDMPVTQFNMKWVESAGLVKF 531

Query: 572  DFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            DFLGLKTLT++  ++  + +   + +DLS IP DD ++Y LL+     G+FQLESSGMR 
Sbjct: 532  DFLGLKTLTVMVTAVKHVKKTKGIDIDLSAIPLDDAKSYELLSRGDAAGVFQLESSGMRD 591

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
             L  M P+ +ED+IA+V+LYRPGP+D I  Y   K+GKE+   +HPL++P+LKET G+++
Sbjct: 592  VLRKMGPNRLEDLIAVVALYRPGPMDQIPRYIACKHGKEEPDYMHPLLEPILKETFGIMV 651

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVMQIAQ+LSGYSL  AD+LRRAMGKK +EEMD+Q+ +F+ GA+   +    A  IF
Sbjct: 652  YQEQVMQIAQVLSGYSLGGADLLRRAMGKKDREEMDRQRAKFVEGATARAVDGGQASMIF 711

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            + +AKFA+YGFNKSHAAAYA+I+YQTAW+K +YP EF+AA+MT EM N +K+  F Q+  
Sbjct: 712  DKVAKFAEYGFNKSHAAAYALIAYQTAWLKANYPAEFMAATMTYEMSNTDKLNSFRQELD 771

Query: 811  QFNIQIMPPSVNTPCVDFKVG-----DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDS 864
            +  I+++PP +N     F V       + + Y+LAA+K VG    + +++       F  
Sbjct: 772  RLGIKLLPPDINASQPTFSVEVLPDGGSAVRYALAALKNVGEAAMKSLVDERERGGRFKD 831

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            + DF +R+DSK LNRR LE++V AG  D    +R +L ++ D + +YA    ++R +   
Sbjct: 832  VGDFAARMDSKVLNRRQLENMVKAGVFDSLDKNRGRLFKNADTLCRYAASAAEDRDSSQM 891

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            ++     G+ +  + LE     +   +   E   +GFY S HPLD Y   ++++ +    
Sbjct: 892  SLLG---GSNAPTLKLESGPDWSPHEKLNQEFEAVGFYLSAHPLDAYAKSMKRLNVLKIA 948

Query: 985  ESVATIR---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            E    ++      +RLA  ++SKQ++ + KGSR  ++ FS+ +  +E   F
Sbjct: 949  ELPRHLQSGGKGRVRLAGSLLSKQERVSAKGSRYAFLQFSDASGMFEVTCF 999


>gi|148273031|ref|YP_001222592.1| DNA polymerase III subunit alpha [Clavibacter michiganensis subsp.
            michiganensis NCPPB 382]
 gi|147830961|emb|CAN01906.1| dnaE2 [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
          Length = 1170

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1061 (36%), Positives = 562/1061 (52%), Gaps = 46/1061 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++ SFVHL VHS YS+L+GA  +  ++   A  + PA+AITD  N+F A +F ++A A
Sbjct: 1    MPRNDSFVHLHVHSEYSMLDGAARVGPLVQAAAEQKMPAVAITDHGNVFGAFDFWKQAKA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGK---------TPFPTVPSIVLLVSTAEGYQRLIEL 115
            AG++PIIG +  I    +     + +         +       + +L  T EG   L  L
Sbjct: 61   AGVKPIIGTEAYITPGTHRGDRTRIRWGNGGQDDVSGSGAYTHLTMLAETTEGMHNLFRL 120

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             SR  L +      R+    L     +GLI  TG  SG +           A K    F+
Sbjct: 121  SSRASL-EGYYFKPRMDRELLSTY-AKGLIATTGCPSGEVQTRLRLGQYDEAVKAAADFR 178

Query: 176  KLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             +FG +  +  +  H  G +R   + + +LA    LPLVATN+  +  E D  +H  L+ 
Sbjct: 179  DIFGAENYFCEVMDHGLGIERRIMTDLHRLAKDLGLPLVATNDLHYTHEHDATSHAALLC 238

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVHAPIL 292
            V   T +   +R +   D +    ++ +   F D  EA +NT+ IA RC       A  +
Sbjct: 239  VQSGTTLDDPNRFKFDADEFYLKTAQQMRHLFRDHEEACDNTLLIAERCDVQFNESANYM 298

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            PR+   E +     E+     +   GL  R  +G       + D R+R D+E+ VIA+M 
Sbjct: 299  PRYPVPEGE----SEQTWFVKEVERGLVRRYPRGF------SDDVRKRADYEVGVIAQMG 348

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFL+VADFI W+K+N I VGPGRGSGAGS+ AYA+ ITD+DPL   LLFERFLNPDR
Sbjct: 349  FPGYFLVVADFINWSKENGIRVGPGRGSGAGSMVAYAMGITDLDPLEHGLLFERFLNPDR 408

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPDFD+DF   RR EVIRYV +KYG ERVAQI+T+G+++AK AL+D  R L  P+S  
Sbjct: 409  VSMPDFDVDFDDRRRGEVIRYVTDKYGDERVAQIVTYGTIKAKQALKDSSRVLGYPFSMG 468

Query: 473  DRLCKLIPN-DPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            D+L K +P       +              +   FRE    DP   ++ E +Q +E L R
Sbjct: 469  DKLTKAMPPAIMGKDIPLSGILDTDHPRYREAGDFREVLAMDPEAQKVFETAQGIENLKR 528

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
                HAAG+++   PL  ++P+ +  +    VTQF+    E  GLIK DFLGL+ LT++ 
Sbjct: 529  QWGVHAAGVIMSSEPLIDIIPIMKREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTIID 588

Query: 584  KSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             +L+ +   RG K+ L  +  DD   Y LL    TLG+FQL+   MR  L  M+PD  ED
Sbjct: 589  DALNNIESNRGEKLVLEDLGLDDQGAYDLLARGDTLGVFQLDGGPMRSLLRMMKPDNFED 648

Query: 643  IIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQVM 696
            I A+++LYRPGP+  ++   Y  RKNG ++I  IHP ++      L  T G+I+YQEQVM
Sbjct: 649  ISAVIALYRPGPMGANSHTNYALRKNGLQEITPIHPELEEPLREVLGTTHGLIVYQEQVM 708

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
             +AQ L+G++L++AD+LRRAMGKK K E+DKQ E F  G   NG S      ++++L  F
Sbjct: 709  SVAQKLAGFTLAQADLLRRAMGKKKKSELDKQFEGFSQGMKDNGYSMAAVKALWDILLPF 768

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            +DY FNK+H+AAY V+SY TA++K HYP E++AA +T   D+ +K+  +  + R+  I++
Sbjct: 769  SDYAFNKAHSAAYGVVSYWTAYLKAHYPAEYMAALLTSVGDSKDKMALYLNECRRMGIKV 828

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSK 875
            +PP VN     F      I + L A++ VG      +  A      F+S +DF  +V   
Sbjct: 829  LPPDVNESIGFFAAAGADIRFGLGAVRNVGANVVEALRGARTEQGAFESFDDFLKKVPLP 888

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI-FAHEKGTF 934
              N+R +ESL+ AGA D  G +R  LL+  + +   +   ++   N      F       
Sbjct: 889  VANKRTVESLIKAGAFDSLGDTRRALLEVHEGMIDASVSDKRAAMNGQVGFDFDSLWDEP 948

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT---IR 991
                 + +        +   E+ +LG Y S HPL   +  L K+   G  E +AT   + 
Sbjct: 949  QHARKVPERPEWAKRDKLAFEREMLGLYVSDHPLAGLEIPLAKLASTGIAELLATDASMD 1008

Query: 992  GNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANF 1031
            G  + LA ++ S Q +  R  G++ G V   +   E    F
Sbjct: 1009 GETVTLAGLLTSVQHRTARNSGNQYGMVQLEDFGGEITCMF 1049


>gi|261337490|ref|ZP_05965374.1| DNA polymerase III, alpha subunit [Bifidobacterium gallicum DSM
            20093]
 gi|270277885|gb|EFA23739.1| DNA polymerase III, alpha subunit [Bifidobacterium gallicum DSM
            20093]
          Length = 1185

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/1071 (30%), Positives = 551/1071 (51%), Gaps = 53/1071 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++  FVHL  H+ YSLL+GA  + N++ +       A+ ITD  N+  A E   +A A
Sbjct: 1    MTQTADFVHLHNHTHYSLLDGASKIPNLVRRTKELGMNAVGITDHGNMHGAYELWSEAVA 60

Query: 65   AGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
             G++PI+G +     +              +      +    +  + L     EG   L+
Sbjct: 61   NGVKPILGIEAYATPETSRFDKSRVHWGTEEQRRDDVSGGGLITHLTLWAENDEGLVNLL 120

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +  S   L  +  +  R+    LQ    +G+I  +G  SG +           A +    
Sbjct: 121  KASSVANLEGRVMRYPRMDKEVLQTY-AKGIICGSGCPSGIVQTRLRLGQFDEALRAAGE 179

Query: 174  FKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             + +FG +  Y+ L  H    +R   + ++ +A   + PL+ATN+S ++  ED  A D +
Sbjct: 180  LQDIFGKENFYIELMDHNLSIERKVTNDLLTIAKKLDAPLLATNDSHYVMPEDASAQDAM 239

Query: 232  MAVAHSTVVSQKDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + +   + + +  R +   + Y      EM  +F +LPEA +NT+E+A RC+ I   H  
Sbjct: 240  LCINSGSTLDEPGRFKFEGEGYYLRPAEEMRELFKELPEACDNTLEVAERCNVIFDDHED 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                      +    +E +    K   GLE R        G   ++  ++ D+E  +I +
Sbjct: 300  GAFMPEFDCPEG--WDETSLFLRKVEEGLEKRY------DGNPPEEVLKQADYECGIICQ 351

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M+F GYFL+VAD+I WAK++++ VGPGRGS AG++ AYA+ ITD+DPL+  L+FERFLNP
Sbjct: 352  MQFCGYFLVVADYINWAKEHDVMVGPGRGSAAGAMVAYAMGITDLDPLQHGLIFERFLNP 411

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+S+PD D+DF  + R  V+ YV +KYGH++VAQ + +G+++ K AL+D  R +   +S
Sbjct: 412  ERVSLPDIDVDFDPEGRMRVLDYVADKYGHDKVAQCVIYGTIKTKQALKDSARIMGYEFS 471

Query: 471  QVDRLCKLIPN--DPAHPVSLQAI--------ADDSRFREARLADPSVDRLLEISQKLEG 520
              +R+ K +P        ++++ I        A+   +RE   +D  V R+ + +  +EG
Sbjct: 472  MGERVTKALPPAQTGGKDIAIRDIFNPDAKRYAEAREYRELYDSDADVKRITDQAMGIEG 531

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R    HA   ++G +P++   P+  +       T F     E  GL+K DFLGL  LT
Sbjct: 532  LIRQTGVHACATIMGSKPITDTSPL-LERTDGTVTTTFEYHTCETLGLVKMDFLGLSNLT 590

Query: 581  LLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  +L  +       +D + IP DD  T+ LL++  TLG+FQL+S GMR  L+ ++PD 
Sbjct: 591  VIHDTLKNIENNGKESIDYTKIPLDDKATFELLSSGETLGVFQLDSDGMRSLLKMLRPDN 650

Query: 640  IEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQE 693
              DI AL++LYRPGP+       Y  RKNG+++I  IHP     ++P+LKET G+I+YQE
Sbjct: 651  FSDISALIALYRPGPMGMDSHTNYAKRKNGQQQIDPIHPEVAEALEPILKETYGLIVYQE 710

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            Q+   A++L+GYSL +ADVLRRAMGKK  E + K+K  F  G   +G S+  A  ++++ 
Sbjct: 711  QIQFAARILAGYSLGKADVLRRAMGKKKPEVLAKEKVPFFQGMKDHGYSEEAAQAVWDVF 770

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNK+H+AAY +ISY TA++K HYPVEF+AA +    +N +K   +  +AR+  
Sbjct: 771  LPFAGYAFNKAHSAAYGLISYWTAYLKAHYPVEFMAALLQNAKNNKDKTALYLGEARRMG 830

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSR 871
            I+++ P VN    ++    + + + L A++ VG +  + I+    +    + +  D+  R
Sbjct: 831  IKVLSPDVNESLYEYSAVGDVVRFGLGAVRNVGESAVQDIIAERNNGKGKYVNFMDYIQR 890

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V    LNRR++ESL+ AGA D    +R  L Q  +        +++ +     ++FA   
Sbjct: 891  VPLPALNRRLVESLIKAGAFDSIEPNRRALFQVHEAAIDSYVNIKRKQAEGQFDLFADLD 950

Query: 932  GTF------SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            G          +I +      +   +   E+ +LG Y S HPL   + +L  +       
Sbjct: 951  GDEKSDTMGDARIDIPDIEEWDKKTKLNFEREMLGLYVSDHPLSGMQSVLAGLREMSIAR 1010

Query: 986  SVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +           + +A +V   ++K +++G+    +T  +     +   F
Sbjct: 1011 LIDRAPQMEDRTQVTIAGLVTHVERKVSKRGNAWALITVEDMESSIQCMLF 1061


>gi|325102919|ref|YP_004272573.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145]
 gi|324971767|gb|ADY50751.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145]
          Length = 1454

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1085 (32%), Positives = 552/1085 (50%), Gaps = 77/1085 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL  H+ +S+L+   S+  ++     ++  A+AITD  N+  A  F           
Sbjct: 257  DFVHLHNHTQFSILQSTTSIAELVKAAVKNKMQAVAITDHANMMGAFHFVNNVLNHNKSA 316

Query: 61   -----KACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                 +A   G       I+PI+GC+  +         ++ KT       IVLL     G
Sbjct: 317  QAKNTEAEEKGETPTEQIIKPILGCEFFVCDN------HKDKTRKDNGYQIVLLAKNKNG 370

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
            Y  L ++ S  Y  D      RI  + +++   E +I+L+G   G I           AE
Sbjct: 371  YHNLAKMSSLAYT-DGFYYVPRIDRAIVEKY-KEDIIVLSGNLYGEIPNKILNVGEIQAE 428

Query: 169  KRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              L+ +K  F D  Y+ + RH   D  R    +++LA  H++ L+ATNN+ +++++D  A
Sbjct: 429  DALIWWKNTFKDDFYIEVMRHGQEDENRVNQTLIKLARKHQVKLIATNNTYYINKKDAHA 488

Query: 228  HDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            HD+L+ V     ++                ++Y K++ EM  +F DLPEA+ N  EI  +
Sbjct: 489  HDILLCVKDGEKINTPIGRGRGFRFGMPNQEYYFKSQDEMKKLFQDLPEAIVNIQEIVDK 548

Query: 281  CSFILQVHAPILPRFIEKE--------CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
                      +LP+F   E         D  ++ E   L +    G + R  +       
Sbjct: 549  IEIFKLQRDVLLPKFDIPEEFQVAEDEIDGGKRGENKYLHHLTYEGAKRRYPE------- 601

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
              Q+ R+RLDFEL  I R  + GYFLIV DFI+ A+   + VGPGRGS AGS  AY L I
Sbjct: 602  ITQEIRERLDFELATIERTGYPGYFLIVQDFIKAARDMGVSVGPGRGSAAGSAVAYCLGI 661

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T++DP+ + LLFERFLNPDR+SMPD DIDF  + R +V++YV +KYG  +VAQIIT+G++
Sbjct: 662  TNLDPIAYDLLFERFLNPDRVSMPDIDIDFDDEGRGDVMKYVIDKYGANQVAQIITYGTM 721

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA------------IADDSRFRE 500
             AK+++RD  R L +P  + D++ KLIPN   + +                +    + +E
Sbjct: 722  AAKSSIRDTARVLDLPLFEADKIAKLIPNLKLNKIFNMDDQALRSVLRSEELEGVQQLKE 781

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
                       ++ ++ LEG  R+   HA G++I    ++  VP+     SDL VTQF+ 
Sbjct: 782  LASGSDLSAETIQQAKVLEGSVRNTGIHACGVIITPDDITNFVPVSIAKDSDLYVTQFDN 841

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLG 619
              +E AGL+K DFLGLKTLTL++ ++  +  R     D    P DD +TY L     T+G
Sbjct: 842  SVVESAGLLKMDFLGLKTLTLIKDTVKLVKYRTGIELDPDKFPIDDVKTYELFQRGETVG 901

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            IFQ ES GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RKNG+E I       +
Sbjct: 902  IFQYESPGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGEEPITYDLDACE 961

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
              LKET G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK K+ +DK K +FI  A +N
Sbjct: 962  EYLKETYGITVYQEQVMLLSQKLANFTKGEADVLRKAMGKKQKDVLDKMKPKFIKQAGEN 1021

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G  + +   I++    FA Y FNKSH+  YA ++YQTA++K HYP E++AA ++  M+++
Sbjct: 1022 GHDEKVLEKIWKDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEYMAAVLSNNMNDI 1081

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASA 858
            +++  F ++ ++  ++++ P VN     F V D   I + + AIKGVG      I+E   
Sbjct: 1082 KQVTFFMEECKRMGLEVLSPDVNESFYKFTVNDKYAIRFGMGAIKGVGAGAVETIIENRK 1141

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQK 910
               + S+ D   R+D +  N++  E+L+ AG  DCF G  R Q           ++   K
Sbjct: 1142 SGQYKSIFDLAKRIDLRAANKKAFENLILAGGFDCFEGTHRAQYFFDDGDGSILMEKAIK 1201

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            Y    ++N  +   ++F         + TL       +  +   E+ V+G Y SGHPLD 
Sbjct: 1202 YGAKYKENENSSQASLFGGGSAVEIPEPTLPACDEWGTMEKLAKEKDVVGIYISGHPLDD 1261

Query: 971  YKPILRKMGIKGYEESVATIRGN---NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            YK +L K    G       I        ++  +V S +   T+ G    +         Y
Sbjct: 1262 YKFVLEKYCSAGNLNIFNDIDKGLDFQFKVGGIVSSVRHMVTKDGRGWAFFKLEGYDDGY 1321

Query: 1028 EANFF 1032
            E   +
Sbjct: 1322 EFAIY 1326


>gi|237745551|ref|ZP_04576031.1| DNA polymerase III [Oxalobacter formigenes HOxBLS]
 gi|229376902|gb|EEO26993.1| DNA polymerase III [Oxalobacter formigenes HOxBLS]
          Length = 1153

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1049 (37%), Positives = 602/1049 (57%), Gaps = 40/1049 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++ + SFVHL++HS YS+++G + +++++   A D QPA+A+TD +NLF  ++F + A  
Sbjct: 1    MKNT-SFVHLRLHSEYSIVDGLVRIDDVVGAAAKDGQPALALTDLSNLFGLIKFYKAARK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PI GC + I    + +              ++LLV    GY  L EL+SR +L +Q
Sbjct: 60   KGVKPIAGCDVWITNDVDREKP----------SRLLLLVKDRRGYLNLCELLSRAWLENQ 109

Query: 125  GKQSVRICLSWLQEIGTE----GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
             +    I + WL+E+       GLI L+G   G I  A      + A+K  L +  +F  
Sbjct: 110  YRGRAEIRIEWLEELARRDSETGLIALSGAKQGDIGMALDSTGFENAKKCALRWAGIFPG 169

Query: 181  RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ +QR           Q  +LA   +LP+VAT+   FLS + + AH+    ++   V
Sbjct: 170  NFYIEIQRTGQLGMEQYVRQAAELAEKLQLPVVATHPVQFLSPDQFRAHEARTCISEGEV 229

Query: 240  VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +S K R R         +++EM  +F+DLP AL+N VEIARRC+ +L++    LP F   
Sbjct: 230  LSNKKRARLFNEHQCFLSQTEMAQLFADLPGALQNAVEIARRCNLVLELGHHKLPLFPTP 289

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            +   + +  E+E R+  +      L      +      Y +RL++E+  I  M FSGYFL
Sbjct: 290  DGMTLDEFLESEARH-GLEKRLEVLFPDEEERKARRPVYDERLNYEIQTIINMGFSGYFL 348

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVADFI+WAK N +PVGPGRGSGAGS+ AY+L IT++DP+ ++L+FERFLNP+R+SMPDF
Sbjct: 349  IVADFIRWAKNNGVPVGPGRGSGAGSLVAYSLLITNLDPIAYNLIFERFLNPERVSMPDF 408

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFCQ  RD VI+YV+ +YG + V+QI TFG++ AKAA+RDVGR L + Y+  D + KL
Sbjct: 409  DIDFCQHGRDRVIQYVKERYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFCDGISKL 468

Query: 479  IPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP  P   V++     ++    E   ++  V +LL +++++EG+ R+   HA G++I   
Sbjct: 469  IPFKPGKQVTIADAKKEEPLLAEREQSEEEVKQLLGLAEQVEGITRNVGMHAGGVLIAPG 528

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GV 594
             L+   P+Y        V+QF+ K +E+ GL+KFDFLGL TLT+L  ++ ++ Q      
Sbjct: 529  KLTDFCPLYTQDGESGVVSQFDKKDVEEIGLVKFDFLGLTTLTILDLAVKYIHQLDPAMS 588

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              +L  IP +D ET+ LLT   T+ +FQLES GM+  L+  +PD  EDIIALV+LYRPGP
Sbjct: 589  GFELDTIPLNDKETFDLLTRAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGP 648

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +  RK+G E           +L ET G++IYQEQVMQ+AQ++ GY+L  AD+LR
Sbjct: 649  MDLIPDFCRRKHG-EAFEYPDERAKDILSETYGIMIYQEQVMQMAQVIGGYTLGGADLLR 707

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK   EM + ++ F  GA+KN + +  A  IF+L+ KFA YGFNKSHA AYA++SY
Sbjct: 708  RAMGKKDAAEMARHRQIFRDGAAKNNLPEAKADEIFDLMEKFAGYGFNKSHATAYALLSY 767

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVGDN 833
            QTA++K H+   F+AA+M+L MD+ +K++   +DA     ++I+PP +N+    FK    
Sbjct: 768  QTAYLKKHHAAAFMAANMSLAMDDTDKVRVLVEDAVDVCGLEILPPDINSSDFYFKPVGE 827

Query: 834  ----------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                      +I Y L A+KG G +    I++A  ++PF  L DFC RVD +++NRR +E
Sbjct: 828  PPSVSKKPVTQIRYGLGAVKGSGESAIEAIVQARKERPFRDLFDFCVRVDKRQINRRTIE 887

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            SL+ AGA DCF   R  LL S+          +   +    ++F  E+ T  + +   + 
Sbjct: 888  SLIRAGAFDCFKEDRAVLLASVG--LAIEAAEQAEASANQVSLFG-EEDTVLNAVEYVRV 944

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                   R   E+ VLGF  SGH    Y    R+       E  A+     +  A +V  
Sbjct: 945  PHWTEKSRLTEEKGVLGFCLSGHLFHAYAGEARQFAKSRISELEASREPRWV--AGIVAG 1002

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + + +++G  +  V+  + +   E   F
Sbjct: 1003 TRAQMSQRGKMMV-VSLDDGSATIEVTVF 1030


>gi|298252640|ref|ZP_06976434.1| DNA polymerase III, alpha subunit [Gardnerella vaginalis 5-1]
 gi|297533004|gb|EFH71888.1| DNA polymerase III, alpha subunit [Gardnerella vaginalis 5-1]
          Length = 1178

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/1063 (32%), Positives = 540/1063 (50%), Gaps = 55/1063 (5%)

Query: 15   QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
              H+ YSLL+GA  + +++ +      PA+AITD  N+  A E    A  AGI+PIIG +
Sbjct: 2    HNHTHYSLLDGASKIPDLVARAKELGMPAVAITDHGNMHGAYEMWSTAVKAGIKPIIGIE 61

Query: 75   LDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
              +  +                     +    +  + L      G   L++  S   L  
Sbjct: 62   AYVTPETARQDKSRVHWGTEDQRADDVSGGGLITHMTLWAENDTGLTNLLKASSVANLEG 121

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182
            +  +  R+    L    ++G+I  +G  SG I         + A +    F+ +FG D  
Sbjct: 122  RVMRYPRMDKDVLSTY-SKGVIASSGCPSGIIQTRLRLGQFKEALRAAGEFQDIFGRDNF 180

Query: 183  YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++ L  H    +      ++++A     PL+ATN+  ++ EED EA D ++ +   + + 
Sbjct: 181  FIELMNHGLSIETRVTKDLLEIAKKLNAPLLATNDLHYVHEEDREAQDAMLCINSGSRLD 240

Query: 242  QKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              DR +     +YLK+  +M  +F + PEA +NT+EIARRC+ +                
Sbjct: 241  DPDRFKFDGSGYYLKSAEQMRELFKEFPEACDNTLEIARRCNVMFDDGEDGAFMPQFDCP 300

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +    +E +    K   GLE R             +  ++ D+E  VI +M+F GYFL+V
Sbjct: 301  EG--WDETSLFLKKVEEGLERRYNNN------IPMEVLKQADYECGVICQMQFCGYFLVV 352

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            AD+I WAK + + VGPGRGS AG++ AYA+ IT++DP++  L+FERFLNP+R+S+PD D+
Sbjct: 353  ADYINWAKAHGVMVGPGRGSAAGAMVAYAMGITELDPMKHGLIFERFLNPERVSLPDIDV 412

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK-LI 479
            DF  D R +V+ YV  KYG ++VAQ + +G+++ K AL+D  R +   +S  +++ K L 
Sbjct: 413  DFDPDGRAKVLEYVGEKYGRDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKITKVLP 472

Query: 480  PNDPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            P      +SL  I D+          FRE    DP   R+ E ++ +EGL R    HA  
Sbjct: 473  PAKNGKDMSLHDIFDEKSKRYAEAREFREMYDTDPDTHRITEEAKGIEGLIRQTGVHACA 532

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             ++G  P++   P+  +       T F     E  GL+K DFLGL  LT+++ +L  +  
Sbjct: 533  TIMGSEPITNTSPL-LERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTVIRDTLRNIEN 591

Query: 592  R-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +D + IP DD  TY LL+   TLG+FQL+S GMR  L  ++PD   DI AL++LY
Sbjct: 592  NGKDPIDYTKIPLDDKATYQLLSRGDTLGVFQLDSDGMRALLRTLKPDNFNDISALIALY 651

Query: 651  RPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQIAQLLSG 704
            RPGP+D      Y  RKNG + I+ IHP     +  +L ET G+I+YQEQV   A++L+G
Sbjct: 652  RPGPMDMDSHTNYAKRKNGLQDIIPIHPEVAEPLKEVLDETYGLIVYQEQVQSAARILAG 711

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            YSL +ADVLRRAMGKK  E + K++  F  G   +G S+  A  ++++L  F+ Y FNK+
Sbjct: 712  YSLGKADVLRRAMGKKKPEVLAKEQVPFFEGMKAHGYSEEAAQAVWDVLVPFSGYAFNKA 771

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+AAY +ISY TA++KTHYPVEF+AA +  E  N +K   +  +AR+  IQ++ P VN  
Sbjct: 772  HSAAYGLISYWTAYLKTHYPVEFMAALLQNERTNKDKTALYLGEARRMGIQVLQPDVNES 831

Query: 825  CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDSKKLNRRVL 882
             +++    + + + L AI+ VG      I+         F +  DF  RV    LNRR++
Sbjct: 832  VLEYSAVGDVVRFGLGAIRNVGDKAVNDIITEREGERGRFVNFMDFVQRVPISALNRRLV 891

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---------HEKGT 933
            ESL+ AGA D    +R  L Q  D        +++ +     ++FA          + G 
Sbjct: 892  ESLIKAGAFDSIDSNRRALFQICDPAIDSVIALKRKQAEGQFDLFADLDSSSDSDDDNGM 951

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA----T 989
               +IT+      +   +   E+ +LG Y S HPL     +L  +      + +      
Sbjct: 952  GDMQITVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGLSAVLADLREMSIAQLIDRARTM 1011

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              G  + +A +V S  ++ +RKG+    VT  +     +  FF
Sbjct: 1012 SDGQQVTIAGLVTSVDRRVSRKGNAWAIVTVEDMESSIQCMFF 1054


>gi|289450822|ref|YP_003474944.1| DNA polymerase III subunit alpha [Clostridiales genomosp. BVAB3 str.
            UPII9-5]
 gi|289185369|gb|ADC91794.1| DNA polymerase III, alpha subunit [Clostridiales genomosp. BVAB3 str.
            UPII9-5]
          Length = 1325

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1056 (35%), Positives = 570/1056 (53%), Gaps = 46/1056 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +H+ YSLL GA  ++ +  +IA     A AITD   ++ ALEF Q      I+P
Sbjct: 3    DFVHLHMHTEYSLLSGANRISELPRRIAELGMSACAITDHGVMYGALEFYQACRKENIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC++ + +   L    +          ++LL     G + L +LV+  Y  +      
Sbjct: 63   IIGCEVYVALNGRL---AKDGVADRRTAHLILLAENNCGLRNLNKLVTLSYT-EGFYGKP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L     EGLI L+G   G I  A        A +    ++ +FG +  ++ +Q 
Sbjct: 119  RVDHELLALYH-EGLIALSGCIEGEIPLALRRGDFAGACELARQYQDIFGSENFFLEMQA 177

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                ++    S ++++A    +P VATN+  ++ + D  AH++L+ +     ++ + RPR
Sbjct: 178  TGLPEQNMVNSGLIRIAKKLGIPPVATNDCHYMQQTDATAHEILLCIKTGKKLNDEHRPR 237

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + +   Y+K+ SEM + F DLPEAL NTV IA RC    +     LP+F + E      +
Sbjct: 238  IGSDQLYIKSPSEMAAAFPDLPEALANTVRIAERCKAEFEFGVLHLPKFKQPEEF---SD 294

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L  K  AGLE RLAQ A A     + Y +RL +EL+VI  M ++ Y+LIV DFI +
Sbjct: 295  SVAYLTTKCRAGLERRLAQAAFA---PRETYEERLKYELSVINSMGYTDYYLIVWDFIDY 351

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+N I VGPGRGSGAGS+ A+ L IT+IDPLR++L+FERFLN +R+SMPDFDIDFC +R
Sbjct: 352  AKRNGIFVGPGRGSGAGSLAAFCLGITNIDPLRYNLIFERFLNAERVSMPDFDIDFCFER 411

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EVI YV  KYG ERV Q+ITFG++ AKA +RDV R L  P  + D+L K+IP      
Sbjct: 412  RQEVIDYVYRKYGTERVCQVITFGTMAAKAVVRDVARVLDYPLPETDKLAKMIPGVLGMT 471

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +A+  ++  +     DP V +L++ +Q LEGL RHASTHAAG++I   P+    P+ 
Sbjct: 472  LK-KALNINADLKMLYEKDPQVRQLIDYAQILEGLPRHASTHAAGVIICGEPVVNYAPL- 529

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                 +  V Q+   +IE  GL+KFDFLGL+TLT+L+ +   +    G ++D   +   D
Sbjct: 530  -AKNDEALVVQYTKNYIESIGLLKFDFLGLRTLTVLRDAAAAIKVNYGREIDFDQLDLAD 588

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             + +++L    T G+FQLESSGM   ++ ++P  +EDIIA +SLYRPGP++ I  Y   +
Sbjct: 589  EKVFNMLGRGETDGVFQLESSGMTSFIKELRPTSLEDIIAGISLYRPGPMEQIPRYVAAR 648

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK--- 722
            +    I   HPL+ P+L+ T G I+YQEQVMQI + L+G+S+  AD++RRAM KK     
Sbjct: 649  HNPALISYDHPLLRPILQVTYGCIVYQEQVMQIVRDLAGFSMGMADIVRRAMAKKKPKEL 708

Query: 723  --------EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
                          K   + G   NG+ + +   IF  +  FA Y FNK HAA+YA+++Y
Sbjct: 709  ATYEGLFLFGGHDFKGNKVPGCIANGVEENVGRKIFNEVLAFAGYAFNKPHAASYAIVAY 768

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-N 833
             TAW++ +YP EF+AA +   + ++ K   + Q  RQ  I+++P +VN   V F     N
Sbjct: 769  YTAWLRLYYPTEFMAAILNSFIGDLSKAAHYVQACRQLGIEVLPLNVNYSQVKFATEGKN 828

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            +I ++L AIK VG    R ++    A+  F    DF  R  +  LNR++ ESL+ AGALD
Sbjct: 829  KIRFALGAIKNVGFGAIREVVAEREANGLFKDPGDFWRRTANLSLNRKMQESLIRAGALD 888

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVENSSV 950
            CF   R +LL ++            +      ++F   +G      +         +S  
Sbjct: 889  CFNIDRARLLTAVVTYLNTVSAGSGSCLAGQFSLFDGPEGESISVAEPVYLPVKAFSSLE 948

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE-------------ESVATIRGNNIRL 997
            +   EQ ++G Y +GHPL  Y+  +    +                 +      G++++ 
Sbjct: 949  KLMMEQELIGLYLTGHPLADYRAQVAAFSVADSSWLLPSVDEQGQVIDERRAADGDSVKF 1008

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             A V+S  ++ TR+ +++  +   +    +E   FP
Sbjct: 1009 MAFVLSVTERITRQSTKMARIVAEDFISRFEVVAFP 1044


>gi|134093726|ref|YP_001098801.1| DNA polymerase III subunit alpha [Herminiimonas arsenicoxydans]
 gi|133737629|emb|CAL60672.1| DNA polymerase III, alpha subunit [Herminiimonas arsenicoxydans]
          Length = 1153

 Score =  731 bits (1886), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/1042 (38%), Positives = 600/1042 (57%), Gaps = 34/1042 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            SP F+HL++HS YS+++G + +++++   AAD QP++AITD  NLF  ++F ++A + GI
Sbjct: 3    SPQFIHLRLHSEYSIVDGLVRIDDVIAAAAADAQPSLAITDLANLFGMVKFYKEARSKGI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI+GC + I   ++                ++LLV    GY +L EL+S+ +L +  + 
Sbjct: 63   KPIVGCDVWISNDNDRDKP----------SRLLLLVKNKTGYLQLCELLSKAWLTNLHRG 112

Query: 128  SVRICLSWLQEIGTE----GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
               I   WL+++  E    GLI+L+G   G I  A    +   AE+    +  +F    Y
Sbjct: 113  RAEIRPEWLEQLAAEGKPNGLIVLSGAHFGDIGMAIDNGNLAAAERHAKRWADMFPGHFY 172

Query: 184  VNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +QR    +      Q   LA    LPLVAT+   FL + ++ AH+    ++   +++ 
Sbjct: 173  IEVQRAEQPNMDAHVRQASVLAAKLNLPLVATHPVQFLDQNEFTAHEARTCISEGEILAN 232

Query: 243  KDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              R  R         ++EM  +F+D+P AL+N+VEIA+RC+ +L++  P LP F   +  
Sbjct: 233  PRRIKRFNERQRFTTQAEMAELFADMPNALQNSVEIAKRCNLMLELGKPKLPNFPTPDGS 292

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             I +    E   + + G    L      +  + + Y+ RL FE + I  M F GYFLIVA
Sbjct: 293  SIDEFLVKE-AQRGLEGRLQHLYPDPEQREKNRERYQARLKFETDTIIHMGFPGYFLIVA 351

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFDID
Sbjct: 352  DFIKWAKNNGVPVGPGRGSGAGSLVAYSLLITDLDPLQYNLLFERFLNPERVSMPDFDID 411

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ+ RD VI+YV+++YG + V+QI TFG++ AK A+RDVGR L   Y+  D + KLIP 
Sbjct: 412  FCQEGRDRVIQYVKDQYGKDAVSQIATFGTMAAKGAVRDVGRVLDFGYNFCDGISKLIPF 471

Query: 482  DPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P   V++  AI ++    E    +  V +LLE++QK+EG+ R+   HA G++I    L+
Sbjct: 472  KPGKLVTIADAIKEEPLLAERLENEEEVKQLLELAQKVEGIARNIGMHAGGVLIAPGKLT 531

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVD 597
               P+Y        V+Q++   +E  GL+KFDFLGL TLT+L +++ ++           
Sbjct: 532  DFCPLYTQGGDSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIKDLDPAMADFS 591

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  +P +D  +Y LLT   T+ +FQLES GM+  L+  +PD  EDIIALV+LYRPGP+D 
Sbjct: 592  LEKLPLNDRPSYDLLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDL 651

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G E+     P  + +L ET G+++YQEQVMQ+AQ++ GYSL  AD+LRRAM
Sbjct: 652  IPDFCRRKHG-ERFEYPDPRTEAILSETYGIMVYQEQVMQMAQVIGGYSLGGADLLRRAM 710

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM + +E F +GA+KN +S   A  IF+L+ KFA YGFNKSHAAAYA++SY TA
Sbjct: 711  GKKKAEEMAQHRELFRAGAAKNDLSAEKADEIFDLMEKFAGYGFNKSHAAAYALLSYHTA 770

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCVDFKVGD---- 832
            ++K H+P  F+AA+++L MD+ +KIK   +D      + ++PP +N     F        
Sbjct: 771  YLKAHHPAAFMAANLSLAMDDTDKIKILVEDTLDVCGLTLLPPDINQSDYRFTPVGVPGK 830

Query: 833  --NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               +I Y L A+KG G      I+ A   KPF  L DFC RVD +++NRR ++SL+ AGA
Sbjct: 831  KATQIRYGLGAVKGSGKGAIDAIVNARQGKPFVDLFDFCKRVDKRQINRRTIDSLIRAGA 890

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             DCF   R  LL S+    + A+  +   +    ++F  +           K S  +   
Sbjct: 891  FDCFNIDRAVLLASVGFAMECAE--QAEASANQVSLFGGDDSDMETPPEYVKASPWSDKQ 948

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            +   E+  LGFY SGH  D Y   +R+           +       +A ++   + + T+
Sbjct: 949  KLTEEKAALGFYLSGHLFDAYAEEVRRFARTKLSNLEPSREPR--TIAGVISGVRTQMTQ 1006

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G R+  VT  + +   +   +
Sbjct: 1007 RG-RMIIVTLDDGSATVDVTVY 1027


>gi|154148261|ref|YP_001407070.1| DNA polymerase III subunit alpha [Campylobacter hominis ATCC BAA-381]
 gi|153804270|gb|ABS51277.1| DNA polymerase III subunit alpha [Campylobacter hominis ATCC BAA-381]
          Length = 1213

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1072 (35%), Positives = 581/1072 (54%), Gaps = 56/1072 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              F HL +H+ YSLL+G   ++N+   +      A+AITD  N+F A+EF +     GI+
Sbjct: 2    SEFTHLHLHTEYSLLDGVNKIDNLAKILKERGTKAVAITDHGNMFGAIEFYKTMKKNGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG +  I   D L               ++LL     GY+ LI L S+ +L D     
Sbjct: 62   PIIGMEAYIHNHDKL-----DDKSDKQRFHLILLAKNEIGYKNLIYLSSKAFL-DGFYYY 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF---------FNSSQVAEKRLLTFKKLFG 179
             RI  + L+    EG+I      +G I                  + A+K  L +K++FG
Sbjct: 116  PRINKNLLRA-HHEGIICNAACIAGEIGFHLNLSERNIKRGAKGYEGAKKAALEYKEIFG 174

Query: 180  DRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            D  Y+ + RH    + R    +++L+    + L+A+N++ + ++  ++  D+ + ++  +
Sbjct: 175  DDFYLEIMRHGYTSQLRIDDDLIRLSRETGIKLIASNDAHYTNQAGHDLQDIFVCLSTGS 234

Query: 239  VVSQKDRPRVTPDHYLKNRS-EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            V+S   R   T          EM  IF+D+PE +ENT EIA +C+       P       
Sbjct: 235  VLSDPKRMHHTVRQLYVKTDEEMKEIFADIPEVIENTQEIANKCNLSFAFDDPNYHPTAP 294

Query: 298  KECDDIQK---------EEENELRNKAVAGLEVRLAQGAIAKG------YHAQDYRQRLD 342
                  +K         E   E   K    L   L +  + K          + Y+ RL+
Sbjct: 295  NFKFTREKANLINLTLPEANEEYSKKNDDLLFETLCRDGLTKRLEFIAPEKHEIYKARLE 354

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ +I +M F GY LIV DFI WAK ++IPVGPGRGS AGS+ AY+L ITD+DP+ ++L
Sbjct: 355  KEIQIIEKMGFGGYMLIVQDFINWAKDHDIPVGPGRGSAAGSLCAYSLRITDLDPIPYNL 414

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNPDR+SMPD D+DF Q RR+EV  YV NKYG E VAQ+ TFG L A+  +RDV 
Sbjct: 415  LFERFLNPDRISMPDIDVDFAQARREEVFEYVSNKYGKENVAQVATFGKLLARGVIRDVA 474

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPV-----------SLQAIADDSRFREARLADPSVDRL 511
            R  +MP  + D + KL+P      +              A   + + ++    DP   ++
Sbjct: 475  RVCEMPLYKADAMAKLVPEQLGITLNGEGEPGSEKYKPGAFQLEPKIKDLVEQDPLAKKV 534

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM--YRDVRSDLPVTQFNMKWIEKAGLI 569
             + S  LEGL R+   HAAG+VI + PL   VP+           +TQ+   ++E   LI
Sbjct: 535  WDYSLGLEGLNRNTGMHAAGVVISNDPLWNKVPLFRQTKSDDGHYITQYTKLYLEDVDLI 594

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRGVKVD-LSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            KFDFLGLK L ++  ++  + +R  K      I F+D +TY  + +  T GIFQ+ES GM
Sbjct: 595  KFDFLGLKNLDVIANAIKLIKRRYNKDIVWENIDFNDKKTYETIQSGNTFGIFQIESPGM 654

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            ++   G++PDC EDIIA++S++RPGP++ I  +  RK+G+ K+  I P I  +L+ T G+
Sbjct: 655  QKLATGLKPDCFEDIIAMISIFRPGPMELIPDFIARKHGEAKVEYIMPEIKEILEPTYGI 714

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQVMQI Q + G+SL EAD++RRAM KK ++++   +E+++ GA K G     A  
Sbjct: 715  IVYQEQVMQIVQKIGGFSLGEADLVRRAMSKKDEKKLAHMREQYLDGAKKLGFDTNKANE 774

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            +F+L+ KFA YGFNKSHAAAY++I++QTA++KT+YP EF+AA +T E  N +K+  +  +
Sbjct: 775  LFDLIMKFASYGFNKSHAAAYSMITFQTAYLKTYYPAEFMAALLTSEESNADKVLTYIDE 834

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDN-------RIYYSLAAIKGVGTTTARHIMEASADKP 861
            A++  I I+PPS+N    +F V D+        I Y L AIKGVG     +I+E   +KP
Sbjct: 835  AKRLGITILPPSINKSIREFSVTDDENAPSKTAIIYGLGAIKGVGLAGIENIIELRDEKP 894

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F++++DF SRVD+ K+N++V+E+L  AGA+DC G +R  LLQ+ +NI    +     R  
Sbjct: 895  FETIDDFASRVDNFKVNKKVIEALTCAGAMDCLGKTRKALLQNSENIVDAMKKAAILRDE 954

Query: 922  KHENIFAHEKGTFSDKITLEKF-SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
               ++   ++  F  K+  E            + EQ+ +G Y SGHPLD +K  +  +  
Sbjct: 955  ATSSLNFGDESFFDIKVNFEDTKEEFKRKELLKLEQQSIGIYLSGHPLDDFKDEISSINY 1014

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +   T  G  I     + S  +K T+ G ++G ++  +    +E   F
Sbjct: 1015 TSTTDFENTDDG-EILCVGKIESITKKITKSGKQMGIISVLDFGGIFEMTAF 1065


>gi|325954953|ref|YP_004238613.1| DNA polymerase III subunit alpha [Weeksella virosa DSM 16922]
 gi|323437571|gb|ADX68035.1| DNA polymerase III, alpha subunit [Weeksella virosa DSM 16922]
          Length = 1463

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1089 (32%), Positives = 554/1089 (50%), Gaps = 78/1089 (7%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK---- 61
            E +P F HL  H+ +S+L+  +++ +++   A    PA+AITD  N+  A  F       
Sbjct: 257  ENAP-FSHLHNHTQFSILQSTITIKDLVKATAKQNMPAVAITDHGNMMGAFHFVDAVYEH 315

Query: 62   ------------ACAAG-----IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS 104
                        A   G     I+PI+G +  +         +  KT       IV L  
Sbjct: 316  NQQVEEKNKELEAQGLGPTEKTIKPIVGVEFFVC------ENHLDKTKKDNGYQIVFLAK 369

Query: 105  TAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS 164
               GY  L ++ S+  + D      RI    +++   EGLI+L+G   G I         
Sbjct: 370  NKVGYHNLAKMASKGNI-DGFYYVPRIDREVIRQ-HKEGLIVLSGNLQGEIPNKILNIGE 427

Query: 165  QVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEE 223
            + AE+ L  +K+ FGD  Y+ L RH   D  R    ++Q A  H + L+ATNN+ ++ +E
Sbjct: 428  RQAEEALEWWKEEFGDDFYIELMRHGQEDEDRVNQTLIQFAMKHNVKLIATNNTYYIDKE 487

Query: 224  DYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
            D  AHD+L+ V  +   S                ++Y K+  EM ++F D+P A+ N  E
Sbjct: 488  DSNAHDILLCVRDAEKQSTPIGRGRGFRFGFPNQEYYFKSSEEMKNLFRDIPHAIINIQE 547

Query: 277  IARRCSFI--------LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
            I  +             +   P      E E D  ++ E   LR     G +        
Sbjct: 548  IVDKVEEYKLRRDVLLPKFTIPEEFIHAEDEQDGGKRGENAYLRFLTYEGAKR------- 600

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
                   +  +RLDFEL  I R  + GYFLIV DFI  A++  + VGPGRGS AGS  AY
Sbjct: 601  RYETITSEIEERLDFELTTIERTGYPGYFLIVQDFIAAAREMGVSVGPGRGSAAGSAVAY 660

Query: 389  ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
             L IT++DP+ + LLFERFLNPDR+SMPD DIDF  + R  V+ YV NKYG  +VAQIIT
Sbjct: 661  CLGITNLDPIEYDLLFERFLNPDRVSMPDIDIDFDDEGRSLVMDYVINKYGANQVAQIIT 720

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND------------PAHPVSLQAIADDS 496
            +G++ AK+++RD  R L +P  + D++ KLIPN               + +  + + +  
Sbjct: 721  YGTMAAKSSIRDTARVLDLPLYEADKIAKLIPNMKLSKIFQLDEKVLRNELRPEDLENVL 780

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
              +     +    + ++ +Q LEG  R+   HA G++I    ++  VP+     SDL +T
Sbjct: 781  ELKRLSDGNDLTAQTIQQAQILEGSVRNTGVHACGVIITPDDITNFVPVTTAKDSDLYLT 840

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTK 615
            QF+    E AGL+K DFLGLKTLTL++ ++  +  R     D   IP DD++TY L    
Sbjct: 841  QFDNSVAEFAGLLKMDFLGLKTLTLIKDTIKLVKLRHDIDIDPDQIPIDDNKTYELFQRG 900

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
             T+GIFQ ES GM++ +  ++P    D+IA+ +LYRPGP++ I  +  RK G E+I    
Sbjct: 901  ETIGIFQYESPGMQKHMRDLKPTVFADLIAMNALYRPGPMEYIPSFIRRKAGIEEITYDL 960

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
               +  L ET G+ +YQEQVM ++Q L+ +S  +ADVLR+AMGKK K  +DK K +FI  
Sbjct: 961  DACEEYLSETYGITVYQEQVMLLSQKLADFSKGDADVLRKAMGKKQKAVLDKMKPKFIEQ 1020

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A+  G    I   I+     FA Y FNKSH+  YA I+YQTA++K HYP E++AA ++  
Sbjct: 1021 AAAKGHDPKILEKIWTDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNN 1080

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIM 854
            M++++++  F ++ ++  I+++ P VN     F V  +N I + + A+KGVG+   + I+
Sbjct: 1081 MNDIKQVTFFMEECKRMGIKVLNPDVNESISKFNVNENNAIRFGMEAVKGVGSAAVKAII 1140

Query: 855  EAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ------SLDN 907
                 +  F S+ DF  RVD + +N++ +E+L+ AGA D FG+ R +         +L+ 
Sbjct: 1141 AEREKNGDFSSIFDFVKRVDLRVVNKKTIENLILAGAFDQFGFHRGRYFYQEDGTTNLEK 1200

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSSVRFENEQRVLGFYFSGH 966
            I KY    +  + +   ++F    GT  D +  L      +       E+ V+G + S H
Sbjct: 1201 IIKYGGNYQAQKNSAQTSLFGGLDGTVEDIVPQLPDCDKWSIVQELYKEKEVIGMFISSH 1260

Query: 967  PLDVYKPILRKMGIKGYEESVATI---RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            PLD YK  ++ +      + +       G  + +  ++ +   + ++ G   G  TFS+ 
Sbjct: 1261 PLDEYKDEIKLISNMTLGQLIGREGEVSGRELSMCGIMSNVMHRISKNGKEYGSFTFSDY 1320

Query: 1024 AKEYEANFF 1032
            +  Y+   F
Sbjct: 1321 SDSYDFMIF 1329


>gi|183602396|ref|ZP_02963762.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
            lactis HN019]
 gi|219683289|ref|YP_002469672.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
            lactis AD011]
 gi|241191250|ref|YP_002968644.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
            lactis Bl-04]
 gi|241196656|ref|YP_002970211.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
            lactis DSM 10140]
 gi|183218315|gb|EDT88960.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
            lactis HN019]
 gi|219620939|gb|ACL29096.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
            lactis AD011]
 gi|240249642|gb|ACS46582.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
            lactis Bl-04]
 gi|240251210|gb|ACS48149.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
            lactis DSM 10140]
 gi|289177365|gb|ADC84611.1| DNA polymerase III alpha subunit [Bifidobacterium animalis subsp.
            lactis BB-12]
 gi|295794243|gb|ADG33778.1| DNA polymerase III subunit alpha [Bifidobacterium animalis subsp.
            lactis V9]
          Length = 1188

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/1074 (31%), Positives = 530/1074 (49%), Gaps = 56/1074 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S  FV L  H+ YSLL+GA  + +++         A+ ITD  N+  A E   +A  
Sbjct: 1    MTNSADFVQLHNHTHYSLLDGASKIPDLVKYTKELGMGAVGITDHGNMHGAYEMYTEAVK 60

Query: 65   AGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
              ++PIIG +  +  +                     +    +  + L     EG + LI
Sbjct: 61   QDVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTLWAEDDEGLRNLI 120

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
               S   L  +  +  R+    L    ++G+I  +G  SG +           A +    
Sbjct: 121  RASSVANLEGRVMRYPRMDKEVLSTY-SKGVICGSGCPSGIVQTRLRLGQFDEALRAAGE 179

Query: 174  FKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             + ++G D  ++ L  H    +R     ++++A     PL+ATN+S ++ EED  A D +
Sbjct: 180  LQDIYGKDNFFIELMDHNLEIERKVTKDLLEIAKKLGAPLLATNDSHYVHEEDAGAQDAM 239

Query: 232  MAVAHSTVVSQKDRPRVTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + +   + +   DR +   + Y      +M  +F DLPEA +NT+E+A RC+ +   H  
Sbjct: 240  LCINSGSHLDDPDRFKFDGEGYYMRSAQQMRELFRDLPEACDNTIEVAERCNVMFDDHED 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                      +    +E +    K   GLE R      A          + D+E  VI +
Sbjct: 300  GAFMPKFPCPEG--WDETSLFLKKVEEGLERRYEGNVPAH------VLAQADYECGVICQ 351

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M+F GYFL+VAD+IQWAK + I VGPGRGS AGS+ AYA+ IT++DPL   L+FERFLNP
Sbjct: 352  MQFPGYFLVVADYIQWAKDHGIMVGPGRGSAAGSMVAYAMGITELDPLEHGLIFERFLNP 411

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+S+PD D+DF  + R +VI Y  +KYGH++VAQ + +G+++ K AL+D  R +   +S
Sbjct: 412  ERVSLPDIDVDFDPEGRLKVIEYCGDKYGHDKVAQCVIYGTIKTKQALKDSARIMGYEFS 471

Query: 471  QVDRLCKLIPN--DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEG 520
              + + K +P        V L  I D           +RE   ++P   R+ + +  +EG
Sbjct: 472  MGELVTKALPPAATGGKDVPLHDIFDPGAKRYAEAREYRELYESNPDAKRITDEAMGIEG 531

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R    HA   ++G  P++   P+  +       T F     E  GL+K DFLGL  LT
Sbjct: 532  LIRQTGVHACATIMGSEPITDTSPL-LERTDGTVTTTFEYHTCETLGLVKMDFLGLSNLT 590

Query: 581  LLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  +L  +       +D + IP DD ETY LL+   TLG+FQL+S GMR  L+ ++PD 
Sbjct: 591  VIGDTLRNIEANGKEPIDHTKIPLDDKETYELLSRGDTLGVFQLDSDGMRALLKQLKPDN 650

Query: 640  IEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQE 693
              DI AL++LYRPGP+       Y  RKNG +KI  IHP +       L ET G+IIYQE
Sbjct: 651  FNDISALIALYRPGPMSMDSHTNYAKRKNGLQKIEPIHPELAEPLKEVLDETYGLIIYQE 710

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QV   A++L+GYSL +ADVLRRAMGKK  E + K++  F  G  ++G S+  A  ++++L
Sbjct: 711  QVQSAARILAGYSLGKADVLRRAMGKKKPEVLAKEQVPFFEGMKEHGYSREAAQAVWDVL 770

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              F+ Y FNK+H+AAY +ISY TA++KTHYP EF+AA +     N +K   +  +AR+  
Sbjct: 771  VPFSGYAFNKAHSAAYGLISYWTAYLKTHYPAEFMAALLQGASTNKDKTALYLGEARRMG 830

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSR 871
            I+++ P VN     +    + + + L AI+ VG      I+         + +  DF  R
Sbjct: 831  IKVLSPDVNESVYAYSAVGDVVRFGLGAIRNVGEKAVADIIAERQGSHGRYVNFMDFIRR 890

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V    LNRR++ESL+ AGA D    +R  L Q  +        +++ +     ++FA   
Sbjct: 891  VPLTALNRRLVESLIKAGAFDSIDPNRRALYQIHEAAIDSVTDLKRKQATGQFDLFADLD 950

Query: 932  GTFSD---------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
                D          I++      +   +   E+ +LG Y S HPL   + +L  +    
Sbjct: 951  AGADDGEAEALGDVSISVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQSVLASLRDMS 1010

Query: 983  YEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + +         + + +A ++ +   + ++KG+R   VT  +     +   F
Sbjct: 1011 IAQLIDRAPTMPERSQVMVAGLITNVDSRVSKKGNRWAIVTIEDMESSIQCLLF 1064


>gi|83858389|ref|ZP_00951911.1| DNA polymerase III subunit alpha [Oceanicaulis alexandrii HTCC2633]
 gi|83853212|gb|EAP91064.1| DNA polymerase III subunit alpha [Oceanicaulis alexandrii HTCC2633]
          Length = 1150

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 491/1039 (47%), Positives = 679/1039 (65%), Gaps = 23/1039 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P FVHL+V S YSLLEGA+ +            PA A+TD+NNLF ALEFS+    
Sbjct: 1    MSDAP-FVHLRVRSPYSLLEGAIRIKETAALCKTFSMPAAALTDSNNLFGALEFSEVLSG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPIIG  L I +++       G+   P    +VLL  +  GY  L++L S  YL   
Sbjct: 60   EGVQPIIGVTLSIQVEE----PRPGERSRPDGT-LVLLAQSELGYANLMKLSSAAYLDVA 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  + +  + E  ++GLI LTGG  G ++R      +  A++ L   +  F DRLY+
Sbjct: 115  ATDEPHVPIDRVLE-HSDGLICLTGGFDGVLNRFVCAGRTGPAQELLDRLRARFPDRLYL 173

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQRH   D    E  +V  AY  +LPLVATN   F   E Y+AHD L+ ++    VS +
Sbjct: 174  ELQRHGRADDVTAEDWLVDRAYALDLPLVATNEPHFPRSELYQAHDALLCISEGAYVSME 233

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR ++T +H  K+ + M   F+DLPEA+ NTVEIA+RC+F  +   PILP F  +     
Sbjct: 234  DRRKLTAEHDFKSGAAMADRFADLPEAIANTVEIAQRCAFRPRTSKPILPSFPTE----G 289

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             + E  ELR +++AGLE RL++  I      + Y +RLD+EL +I RM F GYFLIV+DF
Sbjct: 290  DRNEAEELRARSIAGLEDRLSK--IELADTREAYFERLDYELGIIERMGFPGYFLIVSDF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK ++IPVGPGRGSGAGS+ A+ALTIT++DPLRF LLFERFLNP+R+SMPDFD+DFC
Sbjct: 348  IQWAKAHDIPVGPGRGSGAGSLVAWALTITNLDPLRFGLLFERFLNPERVSMPDFDVDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QDRR EVIRYVQ +YG +RVAQIITFG+LQA+A +RDVGR LQ+P+  VDR+ K +PN+P
Sbjct: 408  QDRRGEVIRYVQERYGQDRVAQIITFGTLQARAVVRDVGRVLQLPFGLVDRIAKQVPNNP 467

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A P++  +A+  + + +E +  D  VDRL+ ++ +LEGL+R+ASTHAAG+VIGDRPL++L
Sbjct: 468  AQPITLAEAVKTEPKLQEMQRNDEMVDRLINVALQLEGLFRNASTHAAGVVIGDRPLTEL 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601
            VP+Y+D RSDLP TQFNMKW+E AGL+KFDFLGLKTLT++ ++L ++      + D+  I
Sbjct: 528  VPLYQDPRSDLPATQFNMKWVEPAGLVKFDFLGLKTLTVISRALSYIESAGLDRPDMDAI 587

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
               D  TY LL    ++G+FQLES+GMR  L  ++PD IEDIIAL+SLYRPGP+ NI VY
Sbjct: 588  SLTDPATYELLGVGASIGVFQLESTGMRDTLRKLKPDSIEDIIALISLYRPGPMKNIDVY 647

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             +RK G+ +   +HP ++P+LKET GVIIYQEQVMQIAQ+LSGYSL EAD+LRRAMGKK 
Sbjct: 648  VDRKFGRAEPDYLHPDLEPVLKETYGVIIYQEQVMQIAQILSGYSLGEADLLRRAMGKKK 707

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            KEEMD+Q+ RF  GA K G+S+  A  IF+L+A+FA YGFNKSHAAAYA+I+YQT W+K 
Sbjct: 708  KEEMDQQRVRFNEGAEKRGVSREKANYIFDLVAEFAGYGFNKSHAAAYALIAYQTGWLKA 767

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            ++P  F+A  M+L+  N EK+  F Q+A++  ++++PP VN    DF + D +I Y+L A
Sbjct: 768  NHPAAFMAGLMSLDSANTEKLAVFFQEAKRIGLEVLPPDVNASEADFSLEDGKIRYALGA 827

Query: 842  IKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            I+ VG +   H+ +      PF  + DF  RVD +++N+R  E+L  AGA D     R +
Sbjct: 828  IRNVGYSAMEHVADVRKAGGPFRDVFDFAERVDPRQVNKRAFENLARAGAFDTLEPDRAK 887

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIF---AHEKGTFSDKITLEKFSVENSSVRFENEQR 957
             L S + +   +Q  +  R +   ++F       GT  ++  L +    +   R + E  
Sbjct: 888  ALASAEILLSVSQNAQSERDSAQASLFGGGGEGGGTKLERPNLPEPEPWDPVRRLDEELA 947

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKT-RKGSR 1014
             +G+Y SGHPLD   P L + G+  + +  +         RLAA+V  +Q+K + R G +
Sbjct: 948  AIGYYLSGHPLDDMMPALGRRGVVVFADLPSKAAEGARAARLAAVVRRRQEKVSQRSGEK 1007

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
              +VT S+P+ E+EA   P
Sbjct: 1008 FAFVTLSDPSGEFEALVPP 1026


>gi|298246262|ref|ZP_06970068.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963]
 gi|297553743|gb|EFH87608.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963]
          Length = 1172

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/1053 (31%), Positives = 551/1053 (52%), Gaps = 48/1053 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F HL VH+ YSLL+G   +  ++ +        +AITD   ++ ALEF +   A G+ P
Sbjct: 4    DFAHLHVHTEYSLLDGLSHIKKLVQQTKELGMQHLAITDHGAMYGALEFYKACRAGGVHP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIGC+  +       M +  K        ++L+     GY+ L++L +     +      
Sbjct: 64   IIGCEAYLT----EDMQDHSKRFSDDYYHLLLIAKNNTGYRNLMKLTTIANT-EGYHLRP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            RI    L +   EGLI+ +G  S  I +       Q A++    ++ +FG + LY+ +Q 
Sbjct: 119  RIDKKVLAQY-AEGLIVTSGCLSAEIPKLLLAGKQQEAQQAARWYQDVFGPENLYLEIQE 177

Query: 189  HRG--------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            H G                + Q+     +PL+ATN+  ++  ED ++HDVL+ +     +
Sbjct: 178  HHGVWDNDTPSPQARLNQMLYQMHKDLHIPLIATNDLHYIRAEDAQSHDVLLCIQTGRQI 237

Query: 241  SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
              + R +  + ++YLK+ +EM+ +F +LP+AL NTV +A +C      H   LP+     
Sbjct: 238  DAQKRFKFDSREYYLKSPAEMLQLFPELPDALSNTVRLAEQCEVDPLAHKASLPQVQIP- 296

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                     + L    + G++          G   +  +++LD+E ++I +M ++ YFL+
Sbjct: 297  --PQYASANDYLYALCLEGVKY-------RFGELTEPIKRQLDYEFSIIMQMGYATYFLV 347

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D++ +A+ + I     RGS AGS+ AY L IT++DPLR+ LLFERFLNP+R  MPD D
Sbjct: 348  VWDYVNYARSHGIR-CSARGSAAGSLLAYVLGITNVDPLRYQLLFERFLNPERADMPDID 406

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  DRR+EVI YV  KYG + VAQ++TF ++ AK +++DV RA+       DR+ +LI
Sbjct: 407  MDFPDDRREEVINYVAQKYGVDHVAQMVTFNTMAAKQSVKDVARAMGR-QDVGDRITRLI 465

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P  P   +   ++            +P    +++ + +LEG  R+   HAAG++I   PL
Sbjct: 466  PTGPRITL-RGSLESVRDLTSTYEQNPEAREIIDQALELEGAVRNTGIHAAGVIISSEPL 524

Query: 540  SQLVPMYRDV---RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595
                P+        S   +TQF    +E+ GL+KFDFLGL  LT++  +L F+ + RG +
Sbjct: 525  ELFAPLQLRDFRDASKGFITQFEQSHLEELGLVKFDFLGLSNLTIVDNTLKFIKEARGEE 584

Query: 596  VDLSLIPFD----------DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            +D+  +P D            + + LL+   T GIFQLE + MR+ ++ ++P  +EDI+A
Sbjct: 585  IDMEKLPLDLTGDPKQDRKRAKAFELLSAGETTGIFQLEGAKMREYIKQLKPTSVEDIMA 644

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +++LYRPGP+++I  + + K+G+  +  +   +   L+E+ G+I+YQ+QV+ IA  L+G+
Sbjct: 645  MIALYRPGPMESIPYFIDAKHGRRAVQYLDERLKTWLEESYGIIVYQDQVLLIAVNLAGF 704

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            S  + +  R+A+ KKI  E++  K  FI G   NG+S  IA  +FE +  F  YGFNK+H
Sbjct: 705  SWGKVNKFRKALSKKIMHEVEGYKGDFIQGCIHNGMSPKIAEELFEQIKPFGGYGFNKAH 764

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            AA+YAV+++ TA++K +Y  EF+AA+MT E  +  KI     + ++  ++I+ P VN   
Sbjct: 765  AASYAVVAFSTAYLKANYTAEFMAATMTTEAADARKIANAIAECKRMGVKILGPDVNKSS 824

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLES 884
              F V +  + + L AIKG+G      I+EA  A  PF SL DFC+RV+ + + +  LE+
Sbjct: 825  KGFTVEEGGVRFGLLAIKGIGDAPIDAIIEARQAKGPFKSLADFCTRVNPQSVGKGALET 884

Query: 885  LVFAGALDCFG-YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLE- 941
            L  AGALD  G   R  LL SL+   +Y +   + + +   ++F   +    D   +L  
Sbjct: 885  LAKAGALDSLGRGQRHILLASLERAMQYGKGEREAQEHGLLSLFGDIEEHGGDLAFSLAT 944

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK-GYEESVATIRGNNIRLAAM 1000
                       + E+ ++G Y + HPL     IL   G+     +    + G  + +  M
Sbjct: 945  NVEEIPMQQLLDWERELIGVYITQHPLTHLSDILASKGVTHHLGQITDELNGQKVIVGGM 1004

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +   ++  T+KG  +  +   +         FP
Sbjct: 1005 IKEARRITTKKGDDMCVIQLEDMYGTVGVTVFP 1037


>gi|86742845|ref|YP_483245.1| DNA polymerase III subunit alpha [Frankia sp. CcI3]
 gi|86569707|gb|ABD13516.1| DNA polymerase III, alpha subunit [Frankia sp. CcI3]
          Length = 1249

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/1072 (30%), Positives = 535/1072 (49%), Gaps = 52/1072 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  + SFVHL VH+ YS+L+GA     +  + A    PA+ +TD  N+F A EF Q A +
Sbjct: 1    MP-TDSFVHLHVHTEYSMLDGAAKTGLLFKEAAKLGMPAVGMTDHGNMFGAYEFYQGAKS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVLLVSTAE 107
            AG++PIIG +  +  +                           +       + +L + A 
Sbjct: 60   AGVKPIIGIEAYLAPESRHHKRPVLWGERSQRDVDPAGEGGDVSGGGAYTHMTMLAANAA 119

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            G + L  L S   + +   +  R+    + +  +EG+I  TG  SG +           A
Sbjct: 120  GLRNLFRLSSIASI-EGYYRKPRMDHELVSQY-SEGIIATTGCPSGEVQTRLRLGQFDKA 177

Query: 168  EKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
                 T++++FG D  ++ L  H    +R     ++ +     L  +ATN+S +++++  
Sbjct: 178  LAAAATYQEVFGADNFFLELMDHGLPIERSVRQGLLDIGDKLGLRPLATNDSHYVTQDQA 237

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
             +H+VL+ V     +    R +     Y    SE +    D          +        
Sbjct: 238  GSHEVLLCVGTGKKLDDPTRFKFDGSGYYLKSSEEMRNLWDSEVPGACDSSLLIAERVES 297

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                      + +      + + + LR +   GL  R   G  A      D  +R+D+E+
Sbjct: 298  YDDVFKFVDRMPRYPVPAGETQLSWLRKEIDRGLTWRFPAGVPA------DVVERVDYEV 351

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             VI +M F  YFL+VAD  ++A+   I +GPGRGS  GS+ AY L IT+++P+  +L+FE
Sbjct: 352  GVIDKMGFPAYFLVVADICKFARDRGIGLGPGRGSATGSMIAYILGITELNPIEHALIFE 411

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+S PD D+DF + RR EVIRY+  +YG +RVAQI TFG+++AKAA++D  R L
Sbjct: 412  RFLNPERISPPDIDLDFDERRRGEVIRYITEQYGEDRVAQINTFGTIKAKAAIKDSCRVL 471

Query: 466  QMPYSQVDRLCKLIPND---PAHPV------SLQAIADDSRFREARLADPSVDRLLEISQ 516
               Y+  D++ K +P D      P+      + +   + +  R     D  V ++++ ++
Sbjct: 472  GYDYALGDKISKAMPPDVMGQGIPLAGIFDPNHERYGEAAEVRAQYETDTKVRKVIDTAR 531

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             LEGL R    HAAG+++   PL  ++P++R       +T F     E+ GL+K D LGL
Sbjct: 532  GLEGLTRGTGVHAAGVILCSEPLLDVLPIHRRDNDGAIITGFPFPQCEEMGLLKMDCLGL 591

Query: 577  KTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            + LT++  +++ + + R V +DLS +P +D + + LL    TLG+FQL+   MR  L  M
Sbjct: 592  RNLTVIGDAIEAVKRNRNVDIDLSTLPLEDAKAFELLARGDTLGVFQLDGGPMRNLLRLM 651

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVI 689
             P    DI A+++LYRPGP+  ++ + Y +RKNG+++I+ IHP     ++P+L ET  ++
Sbjct: 652  APTKFGDIAAVLALYRPGPMAANSHIEYADRKNGRKEILPIHPELAEALEPILGETYHLV 711

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVM IA+ L+GYSL  AD+LRRAMGKK KE +DK+  RF +G  + G +      +
Sbjct: 712  VYQEQVMAIARELAGYSLGGADLLRRAMGKKKKEILDKEFARFSAGMKERGYTDAAVQAL 771

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +++L  F+ YGFNKSH A Y V+S+ TA++K +YP EF+AA +T   D+ +K+  +  + 
Sbjct: 772  WDVLVPFSGYGFNKSHTAGYGVVSFWTAYLKANYPAEFMAALLTSVGDDKDKMAVYLAET 831

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDF 868
            R+  IQ++PP VN   + F    + I + L A++ VG      I  A      ++S  DF
Sbjct: 832  RRMGIQVLPPDVNESDLRFGAVGDSIRFGLGAVRNVGENVVASIAAARRRKGAYESFADF 891

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              +VD    N+R ++SL+ AGA D  G+ R  L+   +N        ++       ++F 
Sbjct: 892  LQKVDIGVCNKRTIDSLIKAGAFDSLGHHRRVLVNVHENAIDAVIITKRAEAIGQFDLFG 951

Query: 929  HEKGTFSDKITLEKF------SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
                   ++                       E+ +LG Y S HPL+  +  L +     
Sbjct: 952  DGGAGEEEESPGLGLDLDLSGPEWPKKELLAQERDMLGLYVSSHPLEGAERALDRHRDTR 1011

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
              +      G  +++A ++    ++  +        VT  +     E  FFP
Sbjct: 1012 IVDLAEANDGTTVQIAGIISKIDRRINKNTAKAWAIVTVEDLDASVEVLFFP 1063


>gi|297571263|ref|YP_003697037.1| DNA polymerase III subunit alpha [Arcanobacterium haemolyticum DSM
            20595]
 gi|296931610|gb|ADH92418.1| DNA polymerase III, alpha subunit [Arcanobacterium haemolyticum DSM
            20595]
          Length = 1182

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1063 (34%), Positives = 567/1063 (53%), Gaps = 47/1063 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL VH+ YSLL+GA  +N ++ ++A  +QPA+AITD   LF A E  + A AAGI+P
Sbjct: 5    SFAHLHVHTDYSLLDGAAKINKLVAEVARLEQPAVAITDHGYLFGAYEMYKAATAAGIKP 64

Query: 70   IIGCQLDIDMQ-DNLKMTNQ----------GKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            IIG +  +         T Q            +       + LL     G   L  + S 
Sbjct: 65   IIGLEAYMTPGTSRFDQTRQLWGTPAQRSDDVSARGAYTHMTLLSENNTGMHNLFRMNSL 124

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L  Q  +  R+    L+    +GLI   G  SG I           A K     + +F
Sbjct: 125  ASLEGQMGKWPRMDRELLETYH-DGLIGTAGCPSGEIQTRLRLGQWDEALKAAGELQDIF 183

Query: 179  G-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            G D  YV +  H    +R  ++ ++++A     PL+ATN+S ++  ED +  D ++ +  
Sbjct: 184  GKDNFYVEVMDHGLDIERRVQNDLLKIARMIGAPLIATNDSHYVKREDRDIQDAMLCINS 243

Query: 237  STVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
             + +   DR +   D +Y+K+  EM   F DLPEA++NT+ +A RC+   Q  A  +  +
Sbjct: 244  GSTLMDPDRFKFDGDGYYIKSSEEMHRQFEDLPEAIDNTLVVAERCNVSFQTTADGIS-Y 302

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            + +      ++E +   N+  AGL  R        G      R+R D+E+ VI  M F G
Sbjct: 303  MPEFPVPPGEDETSWFINQVEAGLLKRY------NGTVPAHVRERADYEVGVITSMGFPG 356

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+V+D+I+WAKKN I VGPGRGSGAGS+ AYAL IT +DP++  LLFERFLNP+R+S+
Sbjct: 357  YFLVVSDYIKWAKKNGIRVGPGRGSGAGSMVAYALEITQLDPIKHELLFERFLNPERVSL 416

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DF   RRDEVI+YV+ KYG ++VAQ++T+G+++ K AL+D  R L MP+   D+L
Sbjct: 417  PDIDVDFDDRRRDEVIKYVEEKYGSDKVAQVVTYGTIKTKQALKDAARVLGMPFQMGDQL 476

Query: 476  CKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHAS 526
             K +P D     ++++ I +           FRE   ++    R+ + +  LEG+ R   
Sbjct: 477  TKALPPDVQGKSIAVKDIYNPEAARYNEAGEFREFVDSNAEAKRVFDFALGLEGMTRQTG 536

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HA  +++    L+ ++P+ + ++    +TQF     E+ GL+K DFLGL  LT+++ +L
Sbjct: 537  VHACAVIMSSTALTDVIPIMKRLQDGAIITQFEYPQCEELGLVKMDFLGLSNLTVIEGAL 596

Query: 587  DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
              +        ++  IP DD ETY LL    TLGIFQL+S GMRQ L+ M+PD   DI A
Sbjct: 597  TNIRNNGKEAPNIDEIPLDDVETYELLARAETLGIFQLDSPGMRQLLKQMKPDTFADISA 656

Query: 646  LVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQIA 699
            + +LYRPGP+  ++   Y  RKNG ++   IHP     ++ +L  T G+I++QEQVM+IA
Sbjct: 657  VSALYRPGPMGANSHTNYALRKNGLQEKTPIHPELATALEDILGNTHGLIVFQEQVMRIA 716

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q L+G++L +AD+LR+AMGKK  + + KQ + F  G   +G S      ++++L  FA Y
Sbjct: 717  QKLAGFTLGQADILRKAMGKKKADVLQKQFKGFAQGMRDHGYSDECINTLWDILVPFAQY 776

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSH+ AYA+++YQTA++K HYP E++A+ +T   +N  K+  +  D R+  I++  P
Sbjct: 777  AFNKSHSEAYALVTYQTAYLKAHYPSEYMASLLTSNQNNKTKVATYLADTRRMGIRVNVP 836

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLN 878
             VN     +    N +   L++++ VG      I+E   +   + S +DF  +V +  LN
Sbjct: 837  DVNKSMDVYSAVGNEVRVGLSSVRNVGKNVVDGIIETRKEKGEYTSFQDFLDKVPAAVLN 896

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK- 937
            +R +E L+ AGA D  GYSR  L+   +   +    V++N      ++F           
Sbjct: 897  KRAVECLIKAGAFDSLGYSRRALVSIHEEAIEAVLPVKRNEAGGQFDLFGGLGENNPIAQ 956

Query: 938  ---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK---MGIKGYEESVATIR 991
               + +      +   +   E+ +LG Y S HPL   +  L +     + G +     + 
Sbjct: 957  SFNVEIPDLPEWDKKEKLNIERDMLGLYVSDHPLSGLEAFLDRVADHTVLGIQNDENPVD 1016

Query: 992  GNNIRLAAMVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFFP 1033
            G  + +A ++ S Q + + + G      T  +     E NFFP
Sbjct: 1017 GQMVTVAGLITSVQTRISQKNGKTWATATIEDFTGSIEVNFFP 1059


>gi|86742759|ref|YP_483159.1| DNA polymerase III subunit alpha [Frankia sp. CcI3]
 gi|86569621|gb|ABD13430.1| DNA polymerase III, alpha subunit [Frankia sp. CcI3]
          Length = 1183

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/1072 (30%), Positives = 535/1072 (49%), Gaps = 52/1072 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  + SFVHL VH+ YS+L+GA     +  + A    PA+ +TD  N+F A EF Q A +
Sbjct: 1    MP-TDSFVHLHVHTEYSMLDGAAKTGLLFKEAAKLGMPAVGMTDHGNMFGAYEFYQGAKS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVLLVSTAE 107
            AG++PIIG +  +  +                           +       + +L + A 
Sbjct: 60   AGVKPIIGIEAYLAPESRHHKRPVLWGERSQRDVDPAGEGGDVSGGGAYTHMTMLAANAA 119

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            G + L  L S   + +   +  R+    + +  +EG+I  TG  SG +           A
Sbjct: 120  GLRNLFRLSSIASI-EGYYRKPRMDHELVSQY-SEGIIATTGCPSGEVQTRLRLGQFDKA 177

Query: 168  EKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
                 T++++FG D  ++ L  H    +R     ++ +     L  +ATN+S +++++  
Sbjct: 178  LAAAATYQEVFGADNFFLELMDHGLPIERSVRQGLLDIGDKLGLRPLATNDSHYVTQDQA 237

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
             +H+VL+ V     +    R +     Y    SE +    D          +        
Sbjct: 238  GSHEVLLCVGTGKKLDDPTRFKFDGSGYYLKSSEEMRNLWDSEVPGACDSSLLIAERVES 297

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                      + +      + + + LR +   GL  R   G  A      D  +R+D+E+
Sbjct: 298  YDDVFKFVDRMPRYPVPAGETQLSWLRKEIDRGLTWRFPAGVPA------DVVERVDYEV 351

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             VI +M F  YFL+VAD  ++A+   I +GPGRGS  GS+ AY L IT+++P+  +L+FE
Sbjct: 352  GVIDKMGFPAYFLVVADICKFARDRGIGLGPGRGSATGSMIAYILGITELNPIEHALIFE 411

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+S PD D+DF + RR EVIRY+  +YG +RVAQI TFG+++AKAA++D  R L
Sbjct: 412  RFLNPERISPPDIDLDFDERRRGEVIRYITEQYGEDRVAQINTFGTIKAKAAIKDSCRVL 471

Query: 466  QMPYSQVDRLCKLIPND---PAHPV------SLQAIADDSRFREARLADPSVDRLLEISQ 516
               Y+  D++ K +P D      P+      + +   + +  R     D  V ++++ ++
Sbjct: 472  GYDYALGDKISKAMPPDVMGQGIPLAGIFDPNHERYGEAAEVRAQYETDTKVRKVIDTAR 531

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             LEGL R    HAAG+++   PL  ++P++R       +T F     E+ GL+K D LGL
Sbjct: 532  GLEGLTRGTGVHAAGVILCSEPLLDVLPIHRRDNDGAIITGFPFPQCEEMGLLKMDCLGL 591

Query: 577  KTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            + LT++  +++ + + R V +DLS +P +D + + LL    TLG+FQL+   MR  L  M
Sbjct: 592  RNLTVIGDAIEAVKRNRNVDIDLSTLPLEDAKAFELLARGDTLGVFQLDGGPMRNLLRLM 651

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVI 689
             P    DI A+++LYRPGP+  ++ + Y +RKNG+++I+ IHP     ++P+L ET  ++
Sbjct: 652  APTKFGDIAAVLALYRPGPMAANSHIEYADRKNGRKEILPIHPELAEALEPILGETYHLV 711

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVM IA+ L+GYSL  AD+LRRAMGKK KE +DK+  RF +G  + G +      +
Sbjct: 712  VYQEQVMAIARELAGYSLGGADLLRRAMGKKKKEILDKEFARFSAGMKERGYTDAAVQAL 771

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +++L  F+ YGFNKSH A Y V+S+ TA++K +YP EF+AA +T   D+ +K+  +  + 
Sbjct: 772  WDVLVPFSGYGFNKSHTAGYGVVSFWTAYLKANYPAEFMAALLTSVGDDKDKMAVYLAET 831

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDF 868
            R+  IQ++PP VN   + F    + I + L A++ VG      I  A      ++S  DF
Sbjct: 832  RRMGIQVLPPDVNESDLRFGAVGDSIRFGLGAVRNVGENVVASIAAARRRKGAYESFADF 891

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              +VD    N+R ++SL+ AGA D  G+ R  L+   +N        ++       ++F 
Sbjct: 892  LQKVDIGVCNKRTIDSLIKAGAFDSLGHHRRVLVNVHENAIDAVIITKRAEAIGQFDLFG 951

Query: 929  HEKGTFSDKITLEKF------SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
                   ++                       E+ +LG Y S HPL+  +  L +     
Sbjct: 952  DGGAGEEEESPGLGLDLDLSGPEWPKKELLAQERDMLGLYVSSHPLEGAERALDRHRDTR 1011

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
              +      G  +++A ++    ++  +        VT  +     E  FFP
Sbjct: 1012 IVDLAEANDGTTVQIAGIISKIDRRINKNTAKAWAIVTVEDLDASVEVLFFP 1063


>gi|297565291|ref|YP_003684263.1| DNA polymerase III subunit alpha [Meiothermus silvanus DSM 9946]
 gi|296849740|gb|ADH62755.1| DNA polymerase III, alpha subunit [Meiothermus silvanus DSM 9946]
          Length = 1262

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1098 (35%), Positives = 568/1098 (51%), Gaps = 90/1098 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIA-----ADQQPAIAITDTNNLFSALEFSQKACAA 65
            F HL  H+ +SLL+GA  L +++  +          P +A+TD  NLF A++F + A  A
Sbjct: 30   FAHLHQHTQFSLLDGAARLKDLIKWVKQVSPEE---PMLAMTDHGNLFGAVQFYKYATEA 86

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
             ++PIIG +  +  +       QGK        + LL    EGYQ L  L SR YL +  
Sbjct: 87   EVKPIIGYEAYVAAESRFDR-KQGKGLDGGYFHLTLLAKDFEGYQNLCRLASRAYL-EGF 144

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYV 184
                RI    L+E    G+I L+G     I +       + AE+RLL +  +FGD R ++
Sbjct: 145  YGKPRIDREILRE-HNAGIIALSGCLGAEIPQFILQERHEDAERRLLEYLSIFGDKRYFI 203

Query: 185  NLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +Q H   ++ + ++V+ + A  + L +VATN+  ++ +ED EAH V++AV         
Sbjct: 204  EVQDHGLPEQKKVNRVLKEFADKYGLGIVATNDGHYVRKEDAEAHAVVLAVQSKATWDDP 263

Query: 244  DRPRVTPDHYLKNRSEMVS---------IFSDLPEALENTVEIARRCSFILQVHAPILPR 294
            +R +   D +     + +                E  +N++EI R C+  L         
Sbjct: 264  NRWKFPCDEFYVKTPQEMRSTLEGERELWGKRFDELFDNSLEIGRMCNVELVPKKVQYRI 323

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH--------------------- 333
                  +   + E   LR    +GL  R         Y                      
Sbjct: 324  PKYPLPEG--RTEVTYLRELTFSGLLKRYPDRVTDDLYREFLRRLGRPVPHGDGEVLAKA 381

Query: 334  ------------------------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
                                      +   R  +EL V+ RM F GY LIV DFI WAK 
Sbjct: 382  LAELEDLEATRAYLPELKEGTPWGPWEILSRAVYELAVVERMGFPGYLLIVQDFINWAKS 441

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I VGPGRGS AGS+ AYA  IT+IDPL + LLFERFLNP R+SMPD D DF   RR E
Sbjct: 442  QGISVGPGRGSAAGSLVAYATRITNIDPLAYDLLFERFLNPARVSMPDIDTDFSDARRGE 501

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS- 488
            VI YV+++YG E VAQI TFG+L +KAA++D  R   +P  + D L KLIP     P   
Sbjct: 502  VIEYVRSRYGDEMVAQIGTFGTLASKAAIKDAARVFGLPVKKADELAKLIPVVFGKPTPL 561

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +AI      R     DP V R++E+++KLEGL R +S HAAG+VI D PL   +P+ R 
Sbjct: 562  EKAIETIPDLRAEMEKDPLVARVMEVAKKLEGLNRQSSVHAAGVVISDVPLQDYIPLMRA 621

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
               +  VTQ++M  +E  G +K DFLGL+TL+ L +    + + +GV +D   IP DD +
Sbjct: 622  GDGEGKVTQYDMGSVEALGFLKMDFLGLRTLSFLDECKRIVKESKGVDIDYDAIPIDDEK 681

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T GIFQL+S+GM   + G++P  I+DIIAL +LYRPGP++NI  Y  R +G
Sbjct: 682  TFELLGRGETKGIFQLDSAGMTSTVRGLKPRRIQDIIALGALYRPGPMENIPTYIRRHHG 741

Query: 668  KEKIVSIH-----PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            +E +           ++P+L+ET G+ +YQEQ+MQIA   +GYSL EAD+LRRAMGKK  
Sbjct: 742  REAVAYPQFPNAAKYLEPILRETYGIPVYQEQIMQIASAAAGYSLGEADLLRRAMGKKKM 801

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            EEM K + +F  GA++ GI +  A  +F+LL  FA+YGFNKSH+AAYA+++YQTA++K H
Sbjct: 802  EEMVKHRAQFKKGAAQRGIPEDEADRLFDLLEAFANYGFNKSHSAAYAILTYQTAYVKAH 861

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YPVEF AA +T+E  + +K+ ++ + AR   ++++PP +N     F      + + L+A+
Sbjct: 862  YPVEFHAALLTVERHDSDKVAEYIRAARAMGVEVLPPDINRSSFSFSAVGQNVLFGLSAV 921

Query: 843  KGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K VG      I+        F SL DF  RVDS   N+RV ESL+ AGA D  G  R Q+
Sbjct: 922  KNVGEAPTEAIIRERERGGRFKSLPDFLKRVDSAVANKRVAESLIKAGAFDELGE-RGQM 980

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L +LD++ K+AQ   ++  +    +FA  +     + TL K    +   R   E+  LG 
Sbjct: 981  LAALDDLLKWAQAERESANSGMMGLFADAQS----EPTLPKVPPLDEITRLRYEKEALGI 1036

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGN-------NIRLAAMVVSKQQKKTRKGSR 1014
            Y +GHPL  Y+  LR+      E+                + LA +V    +K T+ G  
Sbjct: 1037 YVTGHPLQRYEG-LREAASCTIEDLPDYFHSQKNGKSRIRVLLAGLVEGIVRKPTKSGGM 1095

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            +      +     E   F
Sbjct: 1096 MCKFMLGDETGAVEVVAF 1113


>gi|313201481|ref|YP_004040139.1| DNA polymerase III subunit alpha [Methylovorus sp. MP688]
 gi|312440797|gb|ADQ84903.1| DNA polymerase III, alpha subunit [Methylovorus sp. MP688]
          Length = 1133

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1022 (39%), Positives = 609/1022 (59%), Gaps = 34/1022 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +++G + + + +   AAD+ PA+A+TD +NLF A++F + A   G++P++GC L ++ + 
Sbjct: 1    MVDGTVRIGDYVKAAAADRMPALALTDLSNLFGAVKFYKSARGKGLKPVLGCDLWLENET 60

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N                ++LL  T  GY +L EL+SR YL +Q +    I   WL E G 
Sbjct: 61   NRDQP----------YRLLLLCQTHAGYLKLCELLSRAYLENQHRGRAEIKRQWLVEAGG 110

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-GYDRYRESQV 200
            EGLIML+G  +G + +A    + Q A      +  LF +R Y+ LQR       +  S+ 
Sbjct: 111  EGLIMLSGAMAGDVGQAILQGNQQAALALAQQWAALFPNRFYIELQRAGHAQQEFYISRA 170

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSE 259
            + LA   +LP+VAT+   F+  +D++AH+  + +A   V++   RP+  TP+ + K ++E
Sbjct: 171  LALAGELDLPVVATHPVQFMQADDFKAHEARVCIAEGYVLADNRRPKHFTPEQFFKTQAE 230

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR---NKAV 316
            M ++F+D+P+AL N+VEIA+RC+  L +    LP+F     + +    +  L       +
Sbjct: 231  MATLFADVPQALANSVEIAKRCNLTLTLGKNYLPQFPTPNGESL----DEYLVVQAKLGL 286

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                  L      +      Y  RL+FE N+I +M F GYFLIVADFI WAK N +PVGP
Sbjct: 287  EKRLQVLYPDEAVRDAKRPVYLTRLEFETNIIIQMGFPGYFLIVADFINWAKNNGVPVGP 346

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGSV AY+L ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ+ RD VI YV++
Sbjct: 347  GRGSGAGSVVAYSLGITDLDPLQYALLFERFLNPERVSMPDFDIDFCQEGRDRVIDYVKH 406

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            KYG   V+QI TFG++ AKA +RDVGR L +P++ VD + KLIPN+    +S   +  + 
Sbjct: 407  KYGLASVSQIATFGTMAAKAVIRDVGRVLDLPFNFVDGIAKLIPNELGITLSDA-LEKEP 465

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            + +E R  +  V+ LLE++ +LEGL R+   HA G++I    +S   P+Y     +  V+
Sbjct: 466  QLKERREQEEEVNELLELALRLEGLTRNIGMHAGGVLISPGKISDFSPIYCQQNGESLVS 525

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-----QRGVKVDLSLIPFDDHETYHL 611
            Q++   +E  GL+KFDFLGL+TLT+L  +L+        +    +D   +P +D  TY L
Sbjct: 526  QYDKDDVEAVGLVKFDFLGLRTLTILAMALENANVQRALKELPPLDFETLPINDKPTYQL 585

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
            L +  T  +FQLES GM+  L+  +PDC EDIIALV+LYRPGP+D I  +  RK+G++++
Sbjct: 586  LKSANTTAVFQLESRGMKDMLKQAKPDCFEDIIALVALYRPGPMDLIPDFCRRKHGQQRV 645

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
               HP  +P+LKET G+++YQEQVMQIAQ+++GYSL  AD+LRRAMGKK KEEMD Q+  
Sbjct: 646  EYPHPATEPILKETYGIMVYQEQVMQIAQVVAGYSLGGADLLRRAMGKKKKEEMDAQRAV 705

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            F+ GA KNG  +  A  +F+L+ KFA YGFNKSHAAAYA+++Y TA++K HYP  FLAA+
Sbjct: 706  FVEGAVKNGTPEKQAAELFDLMEKFASYGFNKSHAAAYALVAYHTAYLKAHYPAAFLAAT 765

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTA 850
            M+ +M+N + +  F  D     ++++ P +N     FK + D ++ Y L A+KG G    
Sbjct: 766  MSADMNNTDSVHIFYDDCAANGVEVLAPDINQSEFRFKPISDKQVLYGLGAVKGTGWAAI 825

Query: 851  RHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
              I+ A  A+ PF  L DFC R+D +K+NRRV+ESL+ AGA D    +R  LL  +    
Sbjct: 826  EVILAAREAEGPFKDLFDFCRRLDLRKVNRRVIESLIRAGAFDKLEPNRAALLAGVSLAI 885

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
              A+  +    +   ++F     + +   TL K +  +   + + E+  LGFYFSGHP +
Sbjct: 886  SAAE--QSGAASGQNSLFGEMSDSVAH--TLPKVNAWSEQEKLQQEKSALGFYFSGHPYE 941

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
             YK  L               +     LA +V+  + + T++G  +  VT  +     E 
Sbjct: 942  GYKRELATFVRTTLGNLK--PQDQPQLLAGVVMGIRIRMTQRGK-MAIVTLDDATSRIEI 998

Query: 1030 NF 1031
              
Sbjct: 999  VV 1000


>gi|72160451|ref|YP_288108.1| DNA polymerase III subunit alpha [Thermobifida fusca YX]
 gi|71914183|gb|AAZ54085.1| DNA polymerase III, alpha subunit [Thermobifida fusca YX]
          Length = 1188

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/1075 (31%), Positives = 549/1075 (51%), Gaps = 55/1075 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL VH+ YS+L+GA  L  + ++ A    PA+A+TD  N+F + EF Q +  
Sbjct: 1    MTNDP-FVHLHVHTEYSMLDGAAKLKPLFEEAARLGMPAVAMTDHGNMFGSYEFWQTSKE 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN----------------QGKTPFPTVPSIVLLVSTAEG 108
            +G++PIIG +  +  +                       +  +       + +    A+G
Sbjct: 60   SGVKPIIGIEAYVAPESRFHKQRVFWGTGKTGDEAAEGGKDVSGGGRYLHLTMWARNAKG 119

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
             + L  L S     +      R+ L  + +  +EG+++ TG  SG +         + A 
Sbjct: 120  LRNLFRLSSLASF-EGYYTKPRMDLELMAQY-SEGIMVTTGCPSGGVQTRLRLGQEREAI 177

Query: 169  KRLLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            +     + +FG D ++V L  H    +R   S ++ +A    L  V TN+S +++E+   
Sbjct: 178  EYAGKLRDIFGRDSVFVELMDHGLDIEREVRSGLLTVAKKLGLRPVVTNDSHYVTEDQAA 237

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS---IFSDLPEALENTVEIARRCSF 283
            AHD L+AV     +    R R     Y    +E +     F +  E   NT+ IA +   
Sbjct: 238  AHDALLAVGVGKNLDDPTRFRFNGTGYYLKSAEEMRSLNTFDEWLEGCRNTLWIAEQVED 297

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                        + K      + + + LR +    +  R   G       +++ R+R++ 
Sbjct: 298  GAYDDVFRPRDLMPKFPVPEGETQASWLRKEIERCIPNRYPNG------PSREVRERIEH 351

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL++I RM F  YFL+VAD  Q+A+++ I +GPGRGS  GS+ AY L ITD+DPL  SLL
Sbjct: 352  ELSIIERMGFPAYFLVVADICQYARRSGIALGPGRGSATGSMVAYVLGITDLDPLEHSLL 411

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+R+SMPD D+DF + +R ++IRYV  +YG +RVAQI+TFG+++AKAA++D  R
Sbjct: 412  FERFLNPERVSMPDIDLDFDERKRGDMIRYVTERYGEDRVAQILTFGTIKAKAAIKDATR 471

Query: 464  ALQMPYSQVDRLCKLIPNDPAH---------PVSLQAIADDSRFREARLADPSVDRLLEI 514
             L  PY+  D++ K  P                S     + +  R+   ++P V ++ E 
Sbjct: 472  ILGYPYALGDKITKAFPPAVGGKEIPLSAVFDESHPRYNEAAELRQLIESNPDVRKVYET 531

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            +  LEGL R    HAAG+++   PL  ++P+++       +T F     E+ GL+K DFL
Sbjct: 532  ASGLEGLTRGTGVHAAGVILSAEPLLDVIPLHKRETDGAIITGFPYPQCEEMGLLKMDFL 591

Query: 575  GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+ LT++  ++  +    G +++LS +P D+ +TY LL+   TLG+FQL+   MR  L+
Sbjct: 592  GLRNLTVIDDAIQNIKANEGKEINLSALPLDNKKTYELLSRGDTLGVFQLDGGPMRALLK 651

Query: 634  GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKET----QG 687
             M+P    DI A+++LYRPGP+  +    Y +R NG+++I  IHP +   L         
Sbjct: 652  RMEPKKFGDIAAVLALYRPGPMAANAHNDYADRSNGRQEITPIHPELKEALDPILAESFH 711

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQVM IAQ L+GY+L  AD+LRRAMGKK KE ++K+  +F  G    G SK    
Sbjct: 712  LIVYQEQVMAIAQQLAGYTLGGADLLRRAMGKKKKEALEKEYTKFSEGMLSRGFSKEAMQ 771

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             +++++  F+ Y FNKSH A Y +ISY TA++K ++P  ++AA +T   D+ +K+  +  
Sbjct: 772  ALWDVMLPFSGYAFNKSHTAGYGMISYWTAYLKANHPASYMAALLTSVADDKDKMAVYLA 831

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLE 866
            + R+  I+++PP VN   + F    N I + L A++ VG      I++   +   F S  
Sbjct: 832  ECRKMGIRVLPPDVNESGLQFTPVGNDIRFGLGAVRNVGANVVESILKTREEKGKFTSFV 891

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF S+++    N+RV+ESL+ AGA D  G+SR+ L +  +         +K   +   ++
Sbjct: 892  DFLSKIELTVCNKRVIESLIKAGAFDSLGHSRLDLYRHHEAAVDAVLSSKKQEAHGQFDL 951

Query: 927  FAHEKGTFSDKITLEKF------SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
            F         +     F         +   +   E+ +LG Y S HPL   + IL +   
Sbjct: 952  FGGGDEEDGGESAPLGFSINWTGEEWDRKTKLAFEREMLGLYVSSHPLAGAERILARASD 1011

Query: 981  KGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                + V       + +R+A ++   +++  + G++    T  +     EA FFP
Sbjct: 1012 APLLDVVNGERRNNDEVRIAGLISKVEKRINKAGNQWAIATVEDLDASIEALFFP 1066


>gi|305433235|ref|ZP_07402391.1| DNA-directed DNA polymerase III alpha subunit [Campylobacter coli
            JV20]
 gi|304443936|gb|EFM36593.1| DNA-directed DNA polymerase III alpha subunit [Campylobacter coli
            JV20]
          Length = 1200

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1061 (35%), Positives = 589/1061 (55%), Gaps = 52/1061 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   + G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELAKTLKEQGATSVAMTDHGNMFGAIDFYQTMRSEGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   +++               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGLEAYLHNHEDI-----SDKSSRQRFHLCLYAKNEVGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180
            I    L+E  +EGLI  +    G ++                  + A++  L +KK+FGD
Sbjct: 118  INKKLLEE-HSEGLICSSACLQGEVNWHLNIHSERNVRFGAKGYEAAKEAALWYKKVFGD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRAIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++  DR R +  + Y+K+ ++M  +F+D+PEA+ENT EIA +C+  L +           
Sbjct: 237  LNDPDRLRHSVHEFYVKSPAQMSELFADIPEAIENTQEIANKCNLELNL-----GNPTPP 291

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY----------------HAQDYRQRLD 342
                 ++  +    +    G E       +                      ++Y+ RL+
Sbjct: 292  NFKFTREYAKEYNISLPEEGKEFSFDNDDVVFDELCKKGLEERLKFVDISKHEEYKTRLE 351

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+N+I +MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ AY+L ITD+DP+ +SL
Sbjct: 352  VEINIIKKMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVAYSLKITDLDPIPYSL 411

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L A+  +RDV 
Sbjct: 412  LFERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLARGVIRDVA 471

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            R   M     D L KLIP +    +       + + +E     P    + E ++ LEGL 
Sbjct: 472  RVCDMSIPDADELAKLIPEELKITLDAA-YEKEPKIKEFIERHPKGPEVWEYAKALEGLN 530

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            R+A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT
Sbjct: 531  RNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLT 590

Query: 581  LLQKSLDFLAQRGVKVDLSL-IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            L+  ++  + +R  K  +   I  +D + Y  + +  TLGIFQ+ES GM+     ++P+ 
Sbjct: 591  LINNAIKLIKKRYNKDIIWEAIDVNDAKVYKTIQSGNTLGIFQIESGGMQNLNARLKPER 650

Query: 640  IEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             EDIIA+++LYRPGP+++ +   + +RK+G +KI      ++ +L+ T G+I+YQEQVMQ
Sbjct: 651  FEDIIAVLALYRPGPMESGMLDDFIDRKHGLKKIEYPFDTLESVLEPTYGIIVYQEQVMQ 710

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            I Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A  ++EL+ KFA
Sbjct: 711  IVQIIGGFSLGGADVVRRAMGKKDPEKMKKLKSEFADGAEKQGYDRVKAEELWELIVKFA 770

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++
Sbjct: 771  GYGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLL 830

Query: 818  PPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            PPSVN    +F       G + I Y L AIK VG     +++EA     F +++DF SR+
Sbjct: 831  PPSVNKAIREFSAVEQEDGKDAIVYGLGAIKSVGIPAVENLLEARERGEFKNIDDFLSRI 890

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            +  K+N+R LESL+ AGA D FGY+R  L  ++DN+ + ++ +   R N   ++F  ++ 
Sbjct: 891  EPTKINKRTLESLIKAGAFDEFGYTRKCLFDNMDNLTEGSKKMADARKNAASSLFGEDEL 950

Query: 933  TFSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
            T   ++ +  K        + E E+ +LG Y SGHPLD +    +++      +      
Sbjct: 951  TVGLQVNIVAKNEEFEVMEKLEFEKEILGIYVSGHPLDRFYDKFKEIDYVKSIDFSTLKG 1010

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               I     + S +   ++   R G +   +    +E   F
Sbjct: 1011 SGEILSIGKIESFKSMMSKNNKRYGRLEILDFYSTFEVTVF 1051


>gi|314967462|gb|EFT11561.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL037PA1]
          Length = 1190

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/1077 (31%), Positives = 541/1077 (50%), Gaps = 59/1077 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S  FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +  
Sbjct: 1    MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59

Query: 65   AG------IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVL 101
                    I+PIIG +  +                    D      +  +       + +
Sbjct: 60   YDGDQNPLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                +EG   L  L S     +      R+    + +  + G+I  TG  SG +      
Sbjct: 120  WAKDSEGLHNLFRLSSLAS-YEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRL 177

Query: 162  NSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
               + A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S +
Sbjct: 178  GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            ++E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ + 
Sbjct: 238  VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
                   +V   +         +   + +E+ LR K   GL+ +            ++  
Sbjct: 298  EMIGSYDEVFKYVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVL 349

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RL+ EL+VI  + FS YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  I+PL
Sbjct: 350  ERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPL 409

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++AKAA+
Sbjct: 410  EHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAAV 469

Query: 459  RDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVD 509
            +D  R L  P++  D++ K +P D     V L  I D S         FR+    +P V 
Sbjct: 470  KDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDVA 529

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ GL+
Sbjct: 530  KVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLM 589

Query: 570  KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K DFLGL+ L ++   +  +   RG+ VDL  I  DD  TY +L    TLG+FQL+ + M
Sbjct: 590  KMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGTAM 649

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPML 682
            R  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP +    D +L
Sbjct: 650  RSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEIL 709

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
              T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G S
Sbjct: 710  APTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYS 769

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
                  +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +K+
Sbjct: 770  DDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKM 829

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861
              +  D R  +I ++PP VN   ++F      I + L AI+ VG      I+ A   + P
Sbjct: 830  AMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRAREENGP 889

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
                  F  +V     N+R++ESL+ AGA D  G+SR  L+   +        +++N+ N
Sbjct: 890  APDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYEQAVDAVIDIKRNQAN 949

Query: 922  KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
              +++F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L   
Sbjct: 950  GQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAE 1009

Query: 979  GIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  E V           +  MV    ++ T+ G     VT  +         FP
Sbjct: 1010 SDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066


>gi|57167730|ref|ZP_00366870.1| DNA polymerase III, alpha subunit [Campylobacter coli RM2228]
 gi|57020852|gb|EAL57516.1| DNA polymerase III, alpha subunit [Campylobacter coli RM2228]
          Length = 1200

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1061 (35%), Positives = 589/1061 (55%), Gaps = 52/1061 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   + G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELAKTLKEQGATSVAMTDHGNMFGAIDFYQTMRSEGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   +++               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGLEAYLHNHEDI-----SDKSSRQRFHLCLYAKNEVGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180
            I    L+E  +EGLI  +    G ++                  + A++  L +KK+FGD
Sbjct: 118  INKKLLEE-HSEGLICSSACLQGEVNWHLNIHSERNVRFGAKGYEAAKEAALWYKKVFGD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRAIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++  DR R +  + Y+K+ ++M  +F+D+PEA+ENT EIA +C+  L +           
Sbjct: 237  LNDPDRLRHSVHEFYVKSPAQMSELFADIPEAIENTQEIANKCNLELNL-----GNPTPP 291

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY----------------HAQDYRQRLD 342
                 ++  +    +    G E       +                      ++Y+ RL+
Sbjct: 292  NFKFTREYAKEYNISLPEEGKEFSFDNDDVVFDELCKKGLEERLKFVDISKHEEYKTRLE 351

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+N+I +MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ AY+L ITD+DP+ +SL
Sbjct: 352  VEINIIKKMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVAYSLKITDLDPIPYSL 411

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L A+  +RDV 
Sbjct: 412  LFERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLARGVIRDVA 471

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            R   M     D L KLIP +    +       + + +E     P    + E ++ LEGL 
Sbjct: 472  RVCDMSIPDADELAKLIPEELKITLDAA-YEKEPKIKEFIERHPKGPEVWEYAKALEGLN 530

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            R+A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT
Sbjct: 531  RNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLT 590

Query: 581  LLQKSLDFLAQRGVKVDLSL-IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            L+  ++  + +R  K  +   I  +D + Y  + +  TLGIFQ+ES GM+     ++P+ 
Sbjct: 591  LINNAIKLIKKRYNKDIIWEAIDVNDAKVYKTIQSGNTLGIFQIESGGMQNLNARLKPER 650

Query: 640  IEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             EDIIA+++LYRPGP+++ +   + +RK+G +KI      ++ +L+ T G+I+YQEQVMQ
Sbjct: 651  FEDIIAVLALYRPGPMESGMLDDFIDRKHGLKKIEYPFDTLESVLEPTYGIIVYQEQVMQ 710

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            I Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A  ++EL+ KFA
Sbjct: 711  IVQIIGGFSLGGADVVRRAMGKKDPEKMKKLKSEFADGAEKQGYDRVKAEELWELIVKFA 770

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++
Sbjct: 771  GYGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLL 830

Query: 818  PPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            PPSVN    +F       G + I Y L AIK VG     +++EA     F +++DF SR+
Sbjct: 831  PPSVNKAIREFSAVEQEDGKDAIVYGLGAIKSVGIPAVENLLEARERGEFKNIDDFLSRI 890

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            +  K+N+R LESL+ AGA D FGY+R  L  ++DN+ + ++ +   R N   ++F  ++ 
Sbjct: 891  EPTKINKRTLESLIKAGAFDEFGYTRKCLFDNMDNLTEGSKKMADARKNAASSLFGEDEL 950

Query: 933  TFSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
            T   ++ +  K        + E E+ +LG Y SGHPLD +    +++      +      
Sbjct: 951  TVGLQVNIVAKNEEFEVMEKLEFEKEILGIYVSGHPLDRFYDKFKEIDYVKSIDFSTLKG 1010

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               I     + S +   ++   R G +   +    +E   F
Sbjct: 1011 SGEILSIGKIESFKSMMSKNNKRYGRLEILDFYSTFEVTVF 1051


>gi|315224650|ref|ZP_07866473.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga
            ochracea F0287]
 gi|314945278|gb|EFS97304.1| DNA-directed DNA polymerase III alpha subunit [Capnocytophaga
            ochracea F0287]
          Length = 1485

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/1085 (30%), Positives = 545/1085 (50%), Gaps = 78/1085 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            F HL  H+ +S+L+   S+ +++   A ++ PA+A+TD+ N+ +A  F Q          
Sbjct: 255  FGHLHNHTQHSILQSTTSIKDLVKITAKEKMPAVALTDSGNMMAAFHFVQAVQGHNKEAE 314

Query: 67   -----------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
                             I+PIIGC+ +I         +  ++       +V+L    +GY
Sbjct: 315  AKNKEAEEKSETPTETLIKPIIGCEFNIC------ENHLDRSRQDNGYQVVILAKNKQGY 368

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L ++ S            RI  + +++  ++ LI+L+GG +G +        ++ A++
Sbjct: 369  HNLTKMASIASTKG-FYYVSRIDKAIVEQYKSD-LIVLSGGMNGEVPSKILNIGTKQAKE 426

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             LL +K+ FG+  Y+ + RH   D  R    +V+ +  + + L+ATNN+ +L ++D  AH
Sbjct: 427  ALLWWKEQFGEDFYLEVMRHNQEDENRVNETLVEFSRKYGVKLIATNNTFYLHKKDANAH 486

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            D+L+ V                   + N        +++    ++  E       I+   
Sbjct: 487  DILLCVKDGEKQKTPIGRGRGYRFGMPNNEYYFKTTAEMKTLFKDIPEAILNIQEIIDKV 546

Query: 289  API-------------LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
             P                 F  +E    +K E N LR+    G + +  +          
Sbjct: 547  EPYGLARDILLPKFDIPEEFQVEEDPTGKKGENNYLRHLTYEGAKRKYPE-------ITD 599

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
            + R+RLDFEL++I +  + GYFLIV DFI  A++ N+ VGPGRGS AGS  A+ L IT++
Sbjct: 600  EVRERLDFELSIIEKTGYPGYFLIVQDFIAAARRMNVSVGPGRGSAAGSAVAFCLDITNM 659

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DP+++ LLFERFLNPDR+SMPD DIDF    R +VI YV +KYG  +VA+IIT+G + AK
Sbjct: 660  DPIKYDLLFERFLNPDRVSMPDIDIDFEDSGRQDVINYVIDKYGESQVARIITYGKMAAK 719

Query: 456  AALRDVGRALQMPYSQVDRLCKL----------IPNDPAHPVSLQAIADD----SRFREA 501
            +A++D  R L +P  + +RL  L          + +     +  +  +++       +  
Sbjct: 720  SAIKDTARVLDVPLQESNRLASLVPNGVSSLGKMFSWDDKTLKEKVRSEELPKVDELKRL 779

Query: 502  --RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
                 +    + ++ +  +EG  R+   HA G++I    ++  VP+     SDL VTQF+
Sbjct: 780  LAGEGEEDSTQTIQQANIIEGSVRNTGIHACGVIITPDDITNFVPVALAKDSDLFVTQFD 839

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTL 618
               +E AGL+K DFLGL TLTL++ +++ + Q      D    P DD +TY L     T+
Sbjct: 840  NSVVESAGLLKMDFLGLSTLTLIKDTIENIKQTHNIELDAEAFPLDDKKTYELFQRGETV 899

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            GIFQ ES+GM++ +  ++P    D+IA+ +LYRPGP++ I  +  RK+G E I    P +
Sbjct: 900  GIFQYESTGMQKYMRELKPTVFADLIAMNALYRPGPLEYIPSFIKRKHGIEPIEYDLPDM 959

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +  LKET G+ +YQEQVM ++Q L+G++  EADVLR+AMGKK    + K K +FIS AS+
Sbjct: 960  EEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQIAVLAKMKPKFISQASE 1019

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             G        I+    KFA Y FNKSH+  YA + YQTA++K +YP E++AA ++  M++
Sbjct: 1020 RGHDTQKLEKIWTDWEKFAAYAFNKSHSTCYAWVGYQTAYLKANYPAEYMAAVLSNNMND 1079

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS 857
            ++ I  F ++  +  I+++PP VN     F V  +  I + + A+KGVG      I+E  
Sbjct: 1080 IKTITFFLEECHRMGIKVLPPDVNESLYKFTVNKNGDIRFGMGAVKGVGKAAVDTIVEQR 1139

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQ 909
             ++P+ S+ D   RVD K +N++  ES+  AG  D F    R Q   +       L+   
Sbjct: 1140 QERPYTSIFDLAKRVDYKSINKKAFESIALAGGFDSFTNVHRAQYFHAEADGVPFLEKAI 1199

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++    ++++ +   ++F  E      +  + K     +  +   E+ V+G Y SGHPLD
Sbjct: 1200 RFGTKYQESKNSAQMSLFGGESEVDIPEPAVPKCETWGNLEQLRREKEVVGIYISGHPLD 1259

Query: 970  VYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             +K  L+        E           + +A MV   Q +  + G   G+ T  +    Y
Sbjct: 1260 DFKHELQNFCNISLSELQDLQPFINRELTVAGMVADLQHRTAKNGKGYGFFTLEDYDGSY 1319

Query: 1028 EANFF 1032
            E   F
Sbjct: 1320 EFKLF 1324


>gi|315931919|gb|EFV10874.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni
            327]
          Length = 1088

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1058 (36%), Positives = 587/1058 (55%), Gaps = 47/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180
            I    L++  +EGLI  +    G ++                  + A++  L +KK+F D
Sbjct: 118  INKKLLED-HSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV--HAPILPRFI 296
            ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +    P   +F 
Sbjct: 237  LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296

Query: 297  EKECDDIQKEEENE------------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
             +   D       E                   GLE RL           ++Y+QRL+ E
Sbjct: 297  REYAKDHNITLPEETKEFSFDNDDIVFEELCKKGLEERLK---FIDESKHEEYKQRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354  INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KL+P +    +       + + +E     P    + E ++ LEGL R+
Sbjct: 474  CDMSIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583  QKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R  K  +   I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            S+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D  
Sbjct: 833  SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893  KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952

Query: 936  DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++    K        +   E+ +LG Y SGHPLD +   +  +      +  +      
Sbjct: 953  VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I     +   +   ++   R G +   +    ++A  F
Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050


>gi|162148792|ref|YP_001603253.1| DNA polymerase III subunit alpha [Gluconacetobacter diazotrophicus
            PAl 5]
 gi|161787369|emb|CAP56964.1| putative DNA polymerase III subunit alpha [Gluconacetobacter
            diazotrophicus PAl 5]
          Length = 1142

 Score =  728 bits (1879), Expect = 0.0,   Method: Composition-based stats.
 Identities = 482/1038 (46%), Positives = 653/1038 (62%), Gaps = 26/1038 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL+VHS+YSL +GA+ +  I       + PA+AITDT NLF ALEFSQ    
Sbjct: 1    MPHA-DFVHLRVHSAYSLSQGAIRIPEIASLAQDMRMPAVAITDTGNLFGALEFSQYCSG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPIIGCQ+         +  +   P      +VLL     G   L  L S+ +L   
Sbjct: 60   KGVQPIIGCQV--------GLPPRNDKPGAPAEPVVLLAQDETGLMNLQYLSSQGFLTGD 111

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  + L  L E   EGLI+LTGG+ GP+ R           + L      FGDRL V
Sbjct: 112  T-AEPTVTLDVLCER-AEGLILLTGGTRGPLFRMLADGQQDEVAQWLERLHAAFGDRLAV 169

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L RH    ++  E  ++ LA    LPLVATN   F   E YEAHD L+ +A    ++++
Sbjct: 170  ELHRHGLPVEKAVEPGMIALADRMGLPLVATNECFFPRPEMYEAHDALLCIAQGRTMAER 229

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR RVTP+H+ K  + M  +F+DLPEA +NT+ IARRC+  ++   P+LP   + +    
Sbjct: 230  DRWRVTPEHWFKPPAMMRDLFADLPEACDNTLAIARRCAVRVETRKPLLPVCPKVQP--- 286

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               EE  LR  A  GL  RLA+  +      Q YR RL FEL++IA+M F GYF+IVADF
Sbjct: 287  GATEEQTLRAMAEDGLARRLARMDMD-DATRQVYRDRLTFELDIIAKMGFPGYFMIVADF 345

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK ++IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFC
Sbjct: 346  IQWAKAHDIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFC 405

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QDRRDEVIRYV+ +YG +RVAQIITFG LQA+AA+RDVGR L +P+  V+++ +LIPN+P
Sbjct: 406  QDRRDEVIRYVRGEYGPDRVAQIITFGKLQARAAVRDVGRVLGLPFGMVNKVAELIPNNP 465

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A PV+  QAI  + R +E R  D ++ RL+EI+ +LEGLYRHASTHAAG+VIGDR L +L
Sbjct: 466  AKPVTLKQAIDGEPRLQEMRDTDEAIRRLMEIALQLEGLYRHASTHAAGVVIGDRQLVEL 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD +SD+ VTQ+NMK++E+AGL+KFDFLGL TLT+LQ++  FL    V VDL+ +P
Sbjct: 526  VPLYRDPKSDMLVTQYNMKFVEQAGLVKFDFLGLTTLTILQRACQFLKGLDVTVDLTTLP 585

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  TY +L    T G+FQ E +GMR  L+ M+P  +ED+IA V+LYRPGP+ NI  Y 
Sbjct: 586  LDDAPTYEMLARGDTGGVFQFEGAGMRDVLKQMRPTRLEDLIAAVALYRPGPMANIPDYC 645

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G E     H  I  +L+ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+
Sbjct: 646  RRKHG-EAWEPPHEEIRSILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIR 704

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EMDKQ+E F  GA   GI    A  +F+L+AKFADYGFNKSHAAAYA++SYQTAWMK +
Sbjct: 705  AEMDKQREIFTEGAVGRGIDPEKAAEVFDLMAKFADYGFNKSHAAAYALVSYQTAWMKAN 764

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---DNR--IYY 837
            +PV FLAA M+L  +  +K+    Q+A +  I ++PP +N    DF V    D R  I Y
Sbjct: 765  HPVPFLAACMSLAREKTDKLAALRQEAERLGIPVLPPDINASGPDFTVERLADGRLGIRY 824

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            +LAA+K VG      ++ +  D+PF  L D  +RVD ++LN+  +E+L  AGA D    +
Sbjct: 825  ALAAVKKVGFAAMEALVASRGDRPFADLSDLAARVDPRQLNKMQIENLAKAGAFDTVVPN 884

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENEQ 956
            R  +  + + + + A    +   +    +F     T + +   L   +      R   E 
Sbjct: 885  RALVAAAAETVLRRANTKAQEAASGQIGLFGGGGPTPAPEPLRLPDVTDWPEFERLGMEA 944

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSR 1014
              +GF+ + HPLD Y  +LR++G        A  +     +++A  VV ++++ TR GS+
Sbjct: 945  EAIGFHLTAHPLDSYGLLLRRLGAVRATALEAAAQAGLTRVKIAGCVVDRKERPTRTGSK 1004

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + WV  S+ +   E   F
Sbjct: 1005 MAWVRLSDSSGGCEVTLF 1022


>gi|209545459|ref|YP_002277688.1| DNA polymerase III subunit alpha [Gluconacetobacter diazotrophicus
            PAl 5]
 gi|209533136|gb|ACI53073.1| DNA polymerase III, alpha subunit [Gluconacetobacter diazotrophicus
            PAl 5]
          Length = 1142

 Score =  728 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 482/1038 (46%), Positives = 653/1038 (62%), Gaps = 26/1038 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL+VHS+YSL +GA+ +  I       + PA+AITDT NLF ALEFSQ    
Sbjct: 1    MPHA-DFVHLRVHSAYSLSQGAIRIPEIASLAQDMRMPAVAITDTGNLFGALEFSQYCSG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPIIGCQ+         +  +   P      +VLL     G   L  L S+ +L   
Sbjct: 60   KGVQPIIGCQV--------GLPPRNDKPGAPAEPVVLLAQDETGLMNLQYLSSQGFLTGD 111

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  + L  L E   EGLI+LTGG+ GP+ R           + L      FGDRL V
Sbjct: 112  T-AEPTVTLDVLCER-AEGLILLTGGTRGPLFRMLADGQQDEVAQWLERLHAAFGDRLAV 169

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L RH    ++  E  ++ LA    LPLVATN   F   E YEAHD L+ +A    ++++
Sbjct: 170  ELHRHGLPVEKAVEPGMIALADRMGLPLVATNECFFPRPEMYEAHDALLCIAQGRTMAER 229

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR RVTP+H+ K  + M  +F+DLPEA +NT+ IARRC+  ++   P+LP   + +    
Sbjct: 230  DRWRVTPEHWFKPPAMMRDLFADLPEACDNTLAIARRCAVRVETRKPLLPVCPKVQP--- 286

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               EE  LR  A  GL  RLA+  +      Q YR RL FEL++IA+M F GYF+IVADF
Sbjct: 287  GATEEQTLRAMAEDGLARRLARMDMD-DATRQVYRDRLTFELDIIAKMGFPGYFMIVADF 345

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK ++IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFC
Sbjct: 346  IQWAKAHDIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFC 405

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QDRRDEVIRYV+ +YG +RVAQIITFG LQA+AA+RDVGR L +P+  V+++ +LIPN+P
Sbjct: 406  QDRRDEVIRYVRGEYGPDRVAQIITFGKLQARAAVRDVGRVLGLPFGMVNKVAELIPNNP 465

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A PV+  QAI  + R +E R  D ++ RL+EI+ +LEGLYRHASTHAAG+VIGDR L +L
Sbjct: 466  AKPVTLKQAIDGEPRLQEMRDTDEAIRRLMEIALQLEGLYRHASTHAAGVVIGDRQLVEL 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD +SD+ VTQ+NMK++E+AGL+KFDFLGL TLT+LQ++  FL    V VDL+ +P
Sbjct: 526  VPLYRDPKSDMLVTQYNMKFVEQAGLVKFDFLGLTTLTILQRACQFLKGLDVTVDLTTLP 585

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  TY +L    T G+FQ E +GMR  L+ M+P  +ED+IA V+LYRPGP+ NI  Y 
Sbjct: 586  LDDAPTYEMLARGDTGGVFQFEGAGMRDVLKQMRPTRLEDLIAAVALYRPGPMANIPDYC 645

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G E     H  I  +L+ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+
Sbjct: 646  RRKHG-EAWEPPHEEIRSILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIR 704

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EMDKQ+E F  GA   GI    A  +F+L+AKFADYGFNKSHAAAYA++SYQTAWMK +
Sbjct: 705  AEMDKQREIFTEGAVGRGIDPEKAAEVFDLMAKFADYGFNKSHAAAYALVSYQTAWMKAN 764

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---DNR--IYY 837
            +PV FLAA M+L  +  +K+    Q+A +  I ++PP +N    DF V    D R  I Y
Sbjct: 765  HPVPFLAACMSLAREKTDKLAALRQEAERLGIPVLPPDINASGPDFTVERLADGRLGIRY 824

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            +LAA+K VG      ++ +  D+PF  L D  +RVD ++LN+  +E+L  AGA D    +
Sbjct: 825  ALAAVKKVGFAAMEALVASRGDRPFADLSDLAARVDPRQLNKMQIENLAKAGAFDTVVPN 884

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENEQ 956
            R  +  + + + + A    +   +    +F     T + +   L   +      R   E 
Sbjct: 885  RALVAAAAETVLRRANTQAQEAASGQIGLFGGGGPTPAPEPLRLPDVTDWPEFERLGMEA 944

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVVSKQQKKTRKGSR 1014
              +GF+ + HPLD Y  +LR++G        A  +     +++A  VV ++++ TR GS+
Sbjct: 945  EAIGFHLTAHPLDSYGLLLRRLGAVRATALEAAAQAGLTRVKIAGCVVDRKERPTRTGSK 1004

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + WV  S+ +   E   F
Sbjct: 1005 MAWVRLSDSSGGCEVTLF 1022


>gi|148926683|ref|ZP_01810364.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
            CG8486]
 gi|145845202|gb|EDK22297.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
            CG8486]
          Length = 1200

 Score =  728 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1058 (35%), Positives = 586/1058 (55%), Gaps = 47/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180
            I    L++  +EGLI  +    G ++                  + A++  L +KK+F D
Sbjct: 118  INKKLLED-HSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL------------- 285
            ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L             
Sbjct: 237  LNDPDRIRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296

Query: 286  -QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
             +          E+  +     ++         GLE RL           ++Y+QRL+ E
Sbjct: 297  REYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLEERLK---FIDESKHEEYKQRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354  INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KL+P +    +       + + +E     P    + E ++ LEGL R+
Sbjct: 474  CDMSIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583  QKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R  K  +   I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKNIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRVKAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            S+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D  
Sbjct: 833  SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893  KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952

Query: 936  DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++    K        + E E+ +LG Y SGHPLD +   +  +      E         
Sbjct: 953  VQVNFTPKNEEFEVMEKLEYEKEILGIYVSGHPLDRFYEQINAIDYVKSLEFEGLKNNGE 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I     +   +   ++   R G +   +    ++A  F
Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050


>gi|157415005|ref|YP_001482261.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. jejuni
            81116]
 gi|157385969|gb|ABV52284.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
            81116]
 gi|307747643|gb|ADN90913.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. jejuni
            M1]
          Length = 1200

 Score =  728 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1058 (36%), Positives = 587/1058 (55%), Gaps = 47/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180
            I    L++  +EGLI  +    G ++                  + A++  L +KK+F D
Sbjct: 118  INKKLLED-HSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV--HAPILPRFI 296
            ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +    P   +F 
Sbjct: 237  LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296

Query: 297  EKECDDIQKEEENE------------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
             +   D       E                   GLE RL           ++Y+QRL+ E
Sbjct: 297  REYAKDHNITLPEETKEFSFDNDDIVFEELCKKGLEERLK---FIDESKHEEYKQRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354  INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KL+P +    +       + + +E     P    + E ++ LEGL R+
Sbjct: 474  CDMSIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583  QKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R  K  +   I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            S+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D  
Sbjct: 833  SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893  KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952

Query: 936  DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++    K        +   E+ +LG Y SGHPLD +   +  +      +  +      
Sbjct: 953  VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I     +   +   ++   R G +   +    ++A  F
Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050


>gi|86153288|ref|ZP_01071492.1| DNA polymerase III, alpha subunit subfamily, putative [Campylobacter
            jejuni subsp. jejuni HB93-13]
 gi|121613428|ref|YP_001000414.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. jejuni
            81-176]
 gi|85843014|gb|EAQ60225.1| DNA polymerase III, alpha subunit subfamily, putative [Campylobacter
            jejuni subsp. jejuni HB93-13]
 gi|87249433|gb|EAQ72393.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni
            81-176]
          Length = 1200

 Score =  728 bits (1878), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1058 (36%), Positives = 589/1058 (55%), Gaps = 47/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180
            I    L++  +EGLI  +    G ++                  + A++  L +KK+F D
Sbjct: 118  INKKLLED-HSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV-----HAPILP 293
            ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +           
Sbjct: 237  LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLDLNLGNPTPPNFKFT 296

Query: 294  RFIEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            R   K+ + I  EE  E                GLE RL           ++Y+QRL+ E
Sbjct: 297  REYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEERLK---FIDESKHEEYKQRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354  INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KL+P +    +       + + +E     P    + E ++ LEGL R+
Sbjct: 474  CDMSIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583  QKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R  K  +   I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            S+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D  
Sbjct: 833  SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893  KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952

Query: 936  DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++    K        +   E+ +LG Y SGHPLD +   +  +      +  +      
Sbjct: 953  VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I     +   +   ++   R G +   +    ++A  F
Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050


>gi|281421262|ref|ZP_06252261.1| DNA polymerase III, alpha subunit [Prevotella copri DSM 18205]
 gi|281404797|gb|EFB35477.1| DNA polymerase III, alpha subunit [Prevotella copri DSM 18205]
          Length = 1236

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1117 (32%), Positives = 548/1117 (49%), Gaps = 104/1117 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62
             FVHL VH+ YS+L+G   + +++DK   D    +A+TD   +F   E +          
Sbjct: 3    DFVHLHVHTQYSILDGQSKIPHLVDKAIKDGMKGMAVTDHGVMFGIKELTDYCGKINKDR 62

Query: 63   CAAGI---QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
               G+   +PIIGC++ +      K   +      +   +++L     GY+ LI+LVS  
Sbjct: 63   KKEGLEPFKPIIGCEMYVAR--RTKADREKDKGDMSGYHLIVLAKNYNGYKNLIKLVSNS 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            + +D      R   + L++   E LI+ +   +G +         + A +    +  LFG
Sbjct: 121  W-VDGYYMRPRTDRADLEKYH-EDLIVCSACIAGEVPSKILHGDLEGAREACQWYHNLFG 178

Query: 180  DRLYVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
            D  Y+ LQRH+  D              +    +++++A    + LV TN+  F  +E  
Sbjct: 179  DDYYLELQRHKVPDDPSLLANREAYELQQRANKELIKMAREFNIKLVCTNDCHFEDKETA 238

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            EAHD L+ +A    +   +R R +   + K R EM  +FSD+PEAL NT+E+  +     
Sbjct: 239  EAHDHLLCIATGKDLDDPNRMRYSKQEWFKTRQEMNEVFSDIPEALSNTLEVLDKVEIYS 298

Query: 286  QVHAPILPRFIEKECDDIQ----------------------------------------- 304
              H PI+P F   E    +                                         
Sbjct: 299  IDHGPIMPFFPIPESFGTEEQLRQKVSEEDLYKEFTSDENGKNPLPPEEGQKVIDRLGGY 358

Query: 305  ------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  K E   LR+ A  G +              +D  + ++FEL+V+  M F GYFL
Sbjct: 359  DKIYRIKFEAEYLRHLAYEGAKKLYGDPL------PEDVDEHVNFELHVMKTMGFPGYFL 412

Query: 359  IVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            IV+DFI+ A++   + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD
Sbjct: 413  IVSDFIRAAREELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPD 472

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D DF  D R +V+R+V +KYGHE  A IIT+GS+  K +++DV R  ++P  + + LCK
Sbjct: 473  IDTDFDDDGRGKVLRWVMDKYGHENCAHIITYGSMATKNSIKDVARVEKLPLDKANALCK 532

Query: 478  LIP---NDPAHPVSLQAIADDSRFREA-RLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
             IP    D A      AI      REA    DP     ++ ++ LEG  R    HA G +
Sbjct: 533  AIPDRLPDGAKMNLTNAIKYTPELREAEFSNDPRESNTIKYAKMLEGTIRGTGIHACGFI 592

Query: 534  IGDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            I   P+S  VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ ++++   
Sbjct: 593  ICRDPISNWVPVSTADDPDFPGLKTAVTQYDGHVIETTGLIKMDFLGLKTLSEMKEACKV 652

Query: 589  LAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            + Q     VDL  IP DD  TY L     T+G FQ ES GM++ L  ++P   ED+IA+ 
Sbjct: 653  IKQTTGDVVDLDTIPIDDELTYQLYQRGQTIGTFQFESPGMQKYLRELKPTVFEDLIAMN 712

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +LYRPGP+D I  +  RKNGK+ I    P ++  LK+T G+ +YQEQVM +++ L+ ++ 
Sbjct: 713  ALYRPGPMDYIPDFIARKNGKQAITYDIPCMEKYLKDTYGITVYQEQVMLLSRQLASFTR 772

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             E+D LR+AMGKK K  +D  K +FI    +NG    +   I+    KFA Y FNKSHA 
Sbjct: 773  GESDALRKAMGKKKKAIVDAMKPKFIKQGQENGHDPKVLEKIWGDWEKFASYAFNKSHAT 832

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
             Y+ ++YQTA++K HYP E++AA MT     + +I K  ++ +   I+ + P VN     
Sbjct: 833  CYSWVAYQTAYLKAHYPAEYMAALMTRRFAQITEITKLMEECQSMGIKTLGPDVNESYRV 892

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +   I + L+AIKG+G   A  I+     + P+ S+ DF  RVD   +NR+  E+L
Sbjct: 893  FGVNEHGEIRFGLSAIKGMGAPAADAIVAERLKNGPYKSIFDFAERVDYSSVNRKAFETL 952

Query: 886  VFAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
              +G  D FG  R Q           LD + +Y Q  ++ +     ++F   +       
Sbjct: 953  ALSGGFDSFGIRREQFFGKNNKGETFLDTLVRYGQLFQQEQHEAANSLFGGTEAIEIATP 1012

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNI 995
             +      ++  R   E+ ++G Y S HPLD Y  IL  +      E        +  ++
Sbjct: 1013 PIPDAESWSTIERLNRERELVGIYLSAHPLDEYSIILNSLCNTHCSELGDKQELAKKEDV 1072

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             L  ++   + K T+ G   G+VT  +     E   F
Sbjct: 1073 VLGGIITGVKSKFTKTGKPCGFVTLEDFEGSGELALF 1109


>gi|297161306|gb|ADI11018.1| DNA polymerase III subunit alpha [Streptomyces bingchenggensis BCW-1]
          Length = 1181

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/1070 (31%), Positives = 535/1070 (50%), Gaps = 51/1070 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ +         IA+TD  NL  A +F Q+A  
Sbjct: 1    MTKPP-FTHLHVHTQYSLLDGAARLKDMFNACQEMGMTHIAMTDHGNLHGAYDFYQQATG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AGI PIIG +  +  +                    +         +  S   G   L  
Sbjct: 60   AGITPIIGIEAYVAPESRRYKRRVQWGQPHQKRDDVSGSGGYTHKTIWASNKAGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y+     +  R+    + +  +EGLI  TG  SG +           A K    +
Sbjct: 120  LSSDAYMEGYFVKWPRMDKETIAQW-SEGLIASTGCPSGELQTRLRLGQFDEALKAASEY 178

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG DR ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIEIERRVRDGLLEVGKKLGIPPLVTNDSHYTYSREAVAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             V     +S  DR R     Y    S       D  +A +         +  +       
Sbjct: 239  CVQTGKNLSDPDRFRFDGTGYYLK-STDEMYAIDSSDAWQEGCRNTLLVAEQIDATGWFE 297

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             R +    D      E +  + +   G+E R   G        +D +++ ++E++VI +M
Sbjct: 298  KRDLMPRFDVPEGFTEVSWFQEEVKRGMERRYPAGV------PEDRQKQAEYEMDVIIQM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIDHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VAQI T+G+++AK A++D  R L  PY+ 
Sbjct: 412  RVSMPDVDIDFDERRRGEVIRYVTEKYGADKVAQIGTYGTIKAKNAIKDSARVLGYPYAM 471

Query: 472  VDRLCKLIPND---PAHPVS------LQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DR+ K +P D      P+S          ++ +  R     +  V ++++ ++ +EGL 
Sbjct: 472  GDRITKAMPADVLGKGIPLSGITDDKHPRYSEAAEVRGMYENEADVKKVIDTARGIEGLV 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++    +++ VP++        VTQ++    E  GL+K DFLGL+ LT++
Sbjct: 532  RQMGVHAAGVIMSSETVTEHVPVFSPKNDGQVVTQWDYPTCESLGLLKMDFLGLRNLTIM 591

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  +   +GV + L  +P DD +TY LL    TLG+FQ +   MR  L  M+PD  E
Sbjct: 592  DDAVKMVRANKGVDLKLLELPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRMMKPDNFE 651

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQV 695
            DI A+ +LYRPGP+     + Y  RKN +++I  IHP ++  LK     T G+++YQEQV
Sbjct: 652  DISAVSALYRPGPMGMNSHINYALRKNAQQEITPIHPELEEPLKEVLGITYGLVVYQEQV 711

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+L+GYSL +AD+LRRAMGKK KE +DK+   F  G  + G S      ++++L  
Sbjct: 712  QKAAQVLAGYSLGQADLLRRAMGKKKKEVLDKEFVPFQKGCRERGYSDAAIQAVWDVLVP 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+  I+
Sbjct: 772  FAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVRDDKDKSAIYLNECRRMGIK 831

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            ++ P+VN    +F   GD+ I + L A++ VG      I+        + S  D+  +V+
Sbjct: 832  VLTPNVNESEANFAAQGDDVILFGLTAVRNVGANVVEAIIRGRKSKGKYSSFPDYLDKVE 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F    G 
Sbjct: 892  AVVCNKRTTESLIKAGAFDEMGHTRKGLTAHYETMIDNVVAVKRKEAEGQFDLFGGMGGD 951

Query: 934  FSD--------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
             S          +        + +     E+ +LG Y S HPL   + +L         +
Sbjct: 952  DSGGDGPGFGLDVEFSDI-EWDKAYLLAQEREMLGLYVSDHPLFGIEHVLNDKADAAIAQ 1010

Query: 986  SV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    G  + +  ++   Q+K T++G+     T  + A   +  FFP
Sbjct: 1011 LTGGEHADGAIVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIDCMFFP 1060


>gi|167646770|ref|YP_001684433.1| DNA polymerase III subunit alpha [Caulobacter sp. K31]
 gi|167349200|gb|ABZ71935.1| DNA polymerase III, alpha subunit [Caulobacter sp. K31]
          Length = 1143

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 493/1042 (47%), Positives = 674/1042 (64%), Gaps = 48/1042 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNI--------------LDKIAADQQPAIAITDTNNLFSAL 56
            FVHL+V S+YSLLEGA+  + I              +              D NNLF AL
Sbjct: 9    FVHLRVRSAYSLLEGAIKADKIPGLAAAAGMPAAGLV--------------DRNNLFGAL 54

Query: 57   EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            E+S  +   G+QPIIGC L +       +       +   P+I LLV    GY  L EL 
Sbjct: 55   EYSVYSKDYGVQPIIGCALAVS-----GVGAGPTERWARTPTITLLVQNERGYLNLSELS 109

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S  YL         +  + + E   EGLI+L+GG+ GP+D       +   E  L+  ++
Sbjct: 110  SMAYLESGEMAEPVVPWAKVVE-HAEGLILLSGGTDGPVDALLAAGKTAEGEAALVEMQR 168

Query: 177  LFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             FGDR YV LQRH    +   E  +V  AY H+ PLVATN+  +   E Y+AHD L+ ++
Sbjct: 169  AFGDRFYVELQRHGLPRQAAAEPGLVHWAYEHDAPLVATNDVYYAKPELYDAHDALLCIS 228

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                V Q +R RVTP+H+ K+ ++M  +F+DLPEA +NT++IARRC+F++Q   PILP F
Sbjct: 229  DGAFVGQDERRRVTPEHWFKSSADMRKLFADLPEACDNTLDIARRCAFMVQKRDPILPSF 288

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
               +     + E  EL ++A  GL  RL    +      + Y  RLDFEL++I +M F G
Sbjct: 289  PTGDG----RSEPEELTHQAKEGLRKRL--DGLELAVDEKVYWDRLDFELSIIIKMGFPG 342

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV+DFI+WAK++ IPVGPGRGSGAGS+ A+ LTITD+DPLRF LLFERFLNP+R+SM
Sbjct: 343  YFLIVSDFIKWAKEHGIPVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSM 402

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQ+RR+EVI YVQ KYG +RVAQIITFGSLQA+A LRDVGR +Q+P   VDRL
Sbjct: 403  PDFDIDFCQERREEVIVYVQEKYGRDRVAQIITFGSLQARAVLRDVGRVMQLPLGLVDRL 462

Query: 476  CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            CK++PN+PA PV+  QAI  + R ++AR  D +V   L+++ +LEGL+R+ASTHAAG+VI
Sbjct: 463  CKMVPNNPAAPVTLAQAIEIEPRLKQARDEDGNVKACLDVALQLEGLFRNASTHAAGVVI 522

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
            GDRPL+QL P+Y+D RSDLP TQFNMKW+E AGL+KFDFLGLKTLT+L +++  L +RG 
Sbjct: 523  GDRPLTQLTPLYKDPRSDLPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAVKHLKKRGE 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +DLS +PFDD +TY LL +  T+G+FQLES GMR  L  M+   IE+I AL+SLYRPGP
Sbjct: 583  IIDLSRLPFDDTKTYELLASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGP 642

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +DNI  + + K  ++ +  +HP ++ +LKET GVI+YQEQVMQIAQ+L+GYSL EAD+LR
Sbjct: 643  MDNIDTFVDCKFDRKPVDYLHPSLEVVLKETYGVIVYQEQVMQIAQILAGYSLGEADLLR 702

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK KEEMD QK RF++GA +  + +  + +IFEL+AKFA YGFNKSHAAAYA+I+Y
Sbjct: 703  RAMGKKKKEEMDLQKIRFVAGAKEKDVPEAQSGSIFELVAKFAGYGFNKSHAAAYALIAY 762

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTAW+K + PVEFLAASM+L++ N +K+  F QDAR+F+I + PP VN    DF+V +  
Sbjct: 763  QTAWLKANTPVEFLAASMSLDLSNTDKLAVFHQDARRFDIVVRPPDVNRSGADFEVENGE 822

Query: 835  IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            + Y+L A++ VG    +H++    +  PF  + DF  RVD K +N+R +E+L  AGA D 
Sbjct: 823  VLYALGAVRNVGLEAMKHLVAIREEGGPFRDIFDFVERVDPKLVNKRAIENLARAGAFDS 882

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R Q+  S D +  + Q +  +R      +F  +    + +  L+K    +     +
Sbjct: 883  LSKNRAQIFASADVLIAHGQSIAADRQGGQHALFGGDPA--AGRPRLKKTEPWSQVDLLD 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNI-RLAAMVVSKQQKKTRK 1011
             E   +GFY +GHPLD    +LR+       E       G    R+  +V  +Q++ ++ 
Sbjct: 941  EELAAVGFYLTGHPLDDMVGVLRRRRTHMLTEVIPRAEAGMEAFRMCGVVRRRQERASQS 1000

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G R  +V+ S+P+ EYE   FP
Sbjct: 1001 GERFAFVSLSDPSGEYEV-LFP 1021


>gi|86151776|ref|ZP_01069990.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni
            260.94]
 gi|85841405|gb|EAQ58653.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni
            260.94]
          Length = 1200

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1058 (36%), Positives = 588/1058 (55%), Gaps = 47/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F  ++F Q   A G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGVIDFYQTMKAQGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180
            I    L++  +EGLI  +    G ++                  + A++  L +KK+F D
Sbjct: 118  INKKLLED-HSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV-----HAPILP 293
            ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +           
Sbjct: 237  LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLDLNLGNPTPPNFKFT 296

Query: 294  RFIEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            R   K+ + I  EE  E                GLE RL           ++Y+QRL+ E
Sbjct: 297  REYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEERLK---FIDESKHEEYKQRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354  INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KL+P +    +       + + +E     P    + E ++ LEGL R+
Sbjct: 474  CDMSIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583  QKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R  K  +   I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            S+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D  
Sbjct: 833  SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893  KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952

Query: 936  DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++    K        +   E+ +LG Y SGHPLD +   +  +      +  +      
Sbjct: 953  VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I     +   +   ++   R G +   +    ++A  F
Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050


>gi|315108557|gb|EFT80533.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL030PA2]
          Length = 1190

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/1077 (31%), Positives = 539/1077 (50%), Gaps = 59/1077 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S  FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +  
Sbjct: 1    MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59

Query: 65   AG------IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVL 101
                    I+PIIG +  +                    D      +  +       + +
Sbjct: 60   YDGDQNPLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                +EG   L  L S     +      R+    + +  + G+I  TG  SG +      
Sbjct: 120  WAKDSEGLHNLFRLSSLAS-YEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRL 177

Query: 162  NSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
                 A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S +
Sbjct: 178  GQFDEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            ++E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ + 
Sbjct: 238  VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
                   +V   +         +   + +E+ LR K   GL+ +            ++  
Sbjct: 298  EMIGSYDEVFKYVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVL 349

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RL+ EL+VI  + FS YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  I+PL
Sbjct: 350  ERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPL 409

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++AKAA+
Sbjct: 410  EHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAAV 469

Query: 459  RDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVD 509
            +D  R L  P++  D++ K +P D     V L  I D S         FR+    +P V 
Sbjct: 470  KDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDVA 529

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ GL+
Sbjct: 530  KVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLM 589

Query: 570  KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K DFLGL+ L ++   +  +   RG+ VDL  I  DD  TY +L    TLG+FQL+ + M
Sbjct: 590  KMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGTAM 649

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPML 682
            R  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP +    D +L
Sbjct: 650  RSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEIL 709

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
              T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G S
Sbjct: 710  APTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYS 769

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
                  +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +K+
Sbjct: 770  DDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKM 829

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861
              +  D R  +I ++PP VN   ++F      I + L AI+ VG      I+ A   + P
Sbjct: 830  AMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRAREENGP 889

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
                  F  +V     N+R++ESL+ AGA D  G+SR  L+            +++N+ N
Sbjct: 890  APDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQAN 949

Query: 922  KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
              +++F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L   
Sbjct: 950  GQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAE 1009

Query: 979  GIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  E V           +  MV    ++ T+ G     VT  +         FP
Sbjct: 1010 SDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066


>gi|283956127|ref|ZP_06373614.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
            1336]
 gi|283792447|gb|EFC31229.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
            1336]
          Length = 1200

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1058 (36%), Positives = 588/1058 (55%), Gaps = 47/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180
            I    L++  +EGLI  +    G ++                  + A++  L +KK+F D
Sbjct: 118  INKKLLEKY-SEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGISDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV--HAPILPRFI 296
            ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +    P   +F 
Sbjct: 237  LNDPDRIRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296

Query: 297  EKECDDIQKEEENE------------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
             +   D       E                   GLE RL           ++Y+QRL+ E
Sbjct: 297  REYAKDHNITLPEETKEFSFDNDDIVFEELCKKGLEERLK---FIDESKHKEYKQRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354  INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KL+P +    +       + + +E     P    + E ++ LEGL R+
Sbjct: 474  CDMSIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583  QKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R  K  +   I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESDGMQSLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            S+N    +F      G++ I Y L AIK VG     +++EA  D  F  + DF  ++D  
Sbjct: 833  SINKAIREFSALEQDGNDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893  KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952

Query: 936  DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++    K        +   E+ +LG Y SGHPLD +   +  +      +  +      
Sbjct: 953  VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I     +   +   ++   R G +   +    ++A  F
Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050


>gi|289425264|ref|ZP_06427041.1| DNA polymerase III subunit alpha [Propionibacterium acnes SK187]
 gi|295130708|ref|YP_003581371.1| DNA polymerase III, alpha subunit [Propionibacterium acnes SK137]
 gi|289154242|gb|EFD02930.1| DNA polymerase III subunit alpha [Propionibacterium acnes SK187]
 gi|291376065|gb|ADD99919.1| DNA polymerase III, alpha subunit [Propionibacterium acnes SK137]
 gi|313772287|gb|EFS38253.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL074PA1]
 gi|313792016|gb|EFS40117.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL110PA1]
 gi|313802034|gb|EFS43268.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL110PA2]
 gi|313810152|gb|EFS47873.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL083PA1]
 gi|313812820|gb|EFS50534.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL025PA1]
 gi|313827619|gb|EFS65333.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL063PA2]
 gi|313830483|gb|EFS68197.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL007PA1]
 gi|313833519|gb|EFS71233.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL056PA1]
 gi|313838855|gb|EFS76569.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL086PA1]
 gi|314962672|gb|EFT06772.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL082PA1]
 gi|314973483|gb|EFT17579.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL053PA1]
 gi|314976163|gb|EFT20258.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL045PA1]
 gi|314983815|gb|EFT27907.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL005PA1]
 gi|315077888|gb|EFT49939.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL053PA2]
 gi|315080513|gb|EFT52489.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL078PA1]
 gi|315096030|gb|EFT68006.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL038PA1]
 gi|327326310|gb|EGE68100.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL096PA2]
 gi|327445796|gb|EGE92450.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL043PA2]
 gi|327448221|gb|EGE94875.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL043PA1]
 gi|327453265|gb|EGE99919.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL092PA1]
 gi|328760728|gb|EGF74294.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL099PA1]
          Length = 1190

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/1077 (31%), Positives = 540/1077 (50%), Gaps = 59/1077 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S  FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +  
Sbjct: 1    MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59

Query: 65   AG------IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVL 101
                    I+PIIG +  +                    D      +  +       + +
Sbjct: 60   YDGDQNPLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                +EG   L  L S     +      R+    + +  + G+I  TG  SG +      
Sbjct: 120  WAKDSEGLHNLFRLSSLAS-YEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRL 177

Query: 162  NSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
               + A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S +
Sbjct: 178  GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            ++E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ + 
Sbjct: 238  VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
                   +V   +         +   + +E+ LR K   GL+ +            ++  
Sbjct: 298  EMIGSYDEVFKYVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVL 349

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RL+ EL+VI  + FS YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  I+PL
Sbjct: 350  ERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPL 409

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++AKAA+
Sbjct: 410  EHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAAV 469

Query: 459  RDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVD 509
            +D  R L  P++  D++ K +P D     V L  I D S         FR+    +P V 
Sbjct: 470  KDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDVA 529

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ GL+
Sbjct: 530  KVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLM 589

Query: 570  KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K DFLGL+ L ++   +  +   RG+ VDL  I  DD  TY +L    TLG+FQL+ + M
Sbjct: 590  KMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGTAM 649

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPML 682
            R  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP +    D +L
Sbjct: 650  RSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEIL 709

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
              T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G S
Sbjct: 710  APTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYS 769

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
                  +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +K+
Sbjct: 770  DDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKM 829

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861
              +  D R  +I ++PP VN   ++F      I + L AI+ VG      I+ A   + P
Sbjct: 830  AMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRAREENGP 889

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
                  F  +V     N+R++ESL+ AGA D  G+SR  L+            +++N+ N
Sbjct: 890  APDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQAN 949

Query: 922  KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
              +++F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L   
Sbjct: 950  GQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAE 1009

Query: 979  GIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  E V           +  MV    ++ T+ G     VT  +         FP
Sbjct: 1010 SDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066


>gi|317057698|ref|YP_004106165.1| DNA polymerase III subunit alpha [Ruminococcus albus 7]
 gi|315449967|gb|ADU23531.1| DNA polymerase III, alpha subunit [Ruminococcus albus 7]
          Length = 1141

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1040 (34%), Positives = 563/1040 (54%), Gaps = 38/1040 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              FVHL +HS YSLL+GA  ++ +  ++    Q A A+TD  N+F+A+EF     AAGI+
Sbjct: 2    SDFVHLHLHSEYSLLDGACRIDRLAARLKEVGQTACAVTDHGNMFAAIEFYNTMRAAGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+GC++ +         ++   P      ++LL     GY+ LI++VS  Y  +     
Sbjct: 62   PILGCEVYVARGSREDKDHREGKP----YHLILLCENETGYRNLIKMVSLGYT-EGFYSR 116

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
             RI L  L++   +GLI L+G  +G +       + + AE+  L ++ +FG D  ++ +Q
Sbjct: 117  PRIDLELLRKYH-DGLICLSGCVAGELSTKIANGNYKGAEETALLYRDIFGADNYFIEIQ 175

Query: 188  RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            +HR   ++     +++L+    +PL  TN+  +L  ED +A  VLM ++ +T        
Sbjct: 176  KHRDPVEQRVMPSLIRLSQDTGIPLCLTNDCHYLRREDSQAQQVLMCISTATTTDDPAIS 235

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              + + Y+K+  EM  ++  +PEA+ NTV IA RC   ++  + +LP        D   +
Sbjct: 236  FASDEFYVKSAEEMAELYPAIPEAMLNTVRIADRCDVEIKFGSTVLPY----FGIDGVSD 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LRN    GL              +++  +R+++EL+VI  M ++ Y+LIV DFI +
Sbjct: 292  NAAYLRNMCREGLYR-------RYDEPSEEALERMEYELSVINGMGYTDYYLIVWDFINY 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK ++IPVGPGRGSGAGS+ AY + ITDIDPLR+ LLFERFLNP+R++MPDFDIDFC + 
Sbjct: 345  AKSHDIPVGPGRGSGAGSLCAYCIGITDIDPLRYDLLFERFLNPERVTMPDFDIDFCVEG 404

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R  VI YV  KYG + VAQI TFG+L AK ALRD  RA+  PY+  DRL K  P      
Sbjct: 405  RQRVIDYVVEKYGADHVAQIATFGTLGAKQALRDAARAMGEPYATGDRLAKAAPRSM--- 461

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   ++      R+   +D  + ++++ +  +EG+ R+ STHAAG+VI   P+   VP+Y
Sbjct: 462  LLSDSVEKIPELRDMYNSDMKLRKIIDTAILIEGMPRNVSTHAAGVVITKEPVDFYVPLY 521

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
               R     TQ+ M  +E+ GL+K DFLGL  LT+++   D + +     D+  IP DD 
Sbjct: 522  --ARDGAVSTQYTMTVLERLGLLKIDFLGLSNLTIIKHCCDEIKKTHPDFDIEHIPLDDK 579

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y +L+   T G+FQ ES GM   +  ++P  IED+IA++SLYRPGP+D+I  Y   ++
Sbjct: 580  AVYDMLSRGETEGVFQFESGGMTATIMKLRPSGIEDLIAVLSLYRPGPMDSIPNYIRCRH 639

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              + +   HP++ P+L+ T G I+YQEQVMQI + L+GYS + AD++RRAM KK  + ++
Sbjct: 640  DPKLVRYKHPMLKPILEVTYGCIVYQEQVMQIFRSLAGYSFARADLVRRAMSKKKADVLE 699

Query: 727  K------QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                     +  + GA  NG+ +  A +IF+ +  FA Y FNKSHA AYA ++Y+TA++K
Sbjct: 700  NERKAFVWGDEEVCGAVANGVPEKTANDIFDEMTSFASYAFNKSHATAYATVAYRTAYLK 759

Query: 781  THYPVEFLAASMTLEMDN-VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
             H+  E+ ++ MT  ++   EK+  +   AR+  + ++PP +N     F    + I + L
Sbjct: 760  CHFFKEYFSSLMTDAINESTEKLYGYISAARKRGVAVLPPDINKSIGGFSGEGDSIRFGL 819

Query: 840  AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
              IKG+G+ +   I+        F +L+DFC R+  + ++ + +E+L+ AGA+D    +R
Sbjct: 820  LGIKGLGSNSIAAIIRERTLGGDFLNLQDFCRRMQGRDIHTKAVEALIKAGAMDPLPLNR 879

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             + L +   I         +R     + F      G   DK  ++   + +  +      
Sbjct: 880  HEKLINCGIIMGDLSRAASDRLEGQLDFFGSGGASGDGLDKPMIDAEELTSEELLLYE-H 938

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT---IRGNNIRLAAMVVSKQQKKTRKGS 1013
              LG Y S HP+D  +P  R  G       +       G    +  MV  K+   T+KG 
Sbjct: 939  EALGMYLSAHPIDTCEPFARAAGFTSVRTILEAGLKGEGRTADILVMVTRKRSIATKKGD 998

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
             + +    +   E E   FP
Sbjct: 999  MMCFAACEDKTGEMEVIVFP 1018


>gi|327330381|gb|EGE72130.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL097PA1]
          Length = 1190

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/1077 (31%), Positives = 539/1077 (50%), Gaps = 59/1077 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S  FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +  
Sbjct: 1    MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59

Query: 65   AG------IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVL 101
                    I+PIIG +  +                    D      +  +       + +
Sbjct: 60   YDGDQNPLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                +EG   L  L S     +      R+    + +  + G+I  TG  SG +      
Sbjct: 120  WAKDSEGLHNLFRLSSLAS-YEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRL 177

Query: 162  NSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
               + A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S +
Sbjct: 178  GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            ++E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ + 
Sbjct: 238  VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
                   +V   +         +   + +E+ LR K   GL+ +            ++  
Sbjct: 298  EMIGSYDEVFKYVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVL 349

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RL+ EL+VI  + FS YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  I+PL
Sbjct: 350  ERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPL 409

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++AKAA+
Sbjct: 410  EHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAAV 469

Query: 459  RDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVD 509
            +D  R L  P++  D++ K +P D     V L  I D S         FR+    +P V 
Sbjct: 470  KDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDVA 529

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            +++  ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ GL+
Sbjct: 530  KVVATAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLM 589

Query: 570  KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K DFLGL+ L ++   +  +   RG+ VDL  I  DD  TY +L    TLG+FQL+ + M
Sbjct: 590  KMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGTAM 649

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPML 682
            R  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP +    D +L
Sbjct: 650  RSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEIL 709

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
              T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G S
Sbjct: 710  APTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYS 769

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
                  +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +K+
Sbjct: 770  DDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKM 829

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861
              +  D R  +I ++PP VN   ++F      I + L AI+ VG      I+ A   + P
Sbjct: 830  AMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRAREENGP 889

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
                  F  +V     N+R++ESL+ AGA D  G+SR  L+            +++N+ N
Sbjct: 890  APDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQAN 949

Query: 922  KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
              +++F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L   
Sbjct: 950  GQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAE 1009

Query: 979  GIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  E V           +  MV    ++ T+ G     VT  +         FP
Sbjct: 1010 SDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066


>gi|289428306|ref|ZP_06429993.1| DNA polymerase III, alpha subunit [Propionibacterium acnes J165]
 gi|289158455|gb|EFD06671.1| DNA polymerase III, alpha subunit [Propionibacterium acnes J165]
 gi|313807645|gb|EFS46132.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL087PA2]
 gi|313818682|gb|EFS56396.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL046PA2]
 gi|313825324|gb|EFS63038.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL063PA1]
 gi|314925061|gb|EFS88892.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL036PA3]
 gi|314960402|gb|EFT04504.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL002PA2]
 gi|314978578|gb|EFT22672.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL072PA2]
 gi|314987996|gb|EFT32087.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL005PA2]
 gi|314989806|gb|EFT33897.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL005PA3]
 gi|315084184|gb|EFT56160.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL027PA2]
 gi|315085527|gb|EFT57503.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL002PA3]
 gi|315088416|gb|EFT60392.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL072PA1]
 gi|327331815|gb|EGE73552.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL096PA3]
 gi|327443592|gb|EGE90246.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL013PA2]
 gi|328753347|gb|EGF66963.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL020PA1]
          Length = 1190

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/1077 (31%), Positives = 540/1077 (50%), Gaps = 59/1077 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S  FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +  
Sbjct: 1    MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59

Query: 65   AG------IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVL 101
                    I+PIIG +  +                    D      +  +       + +
Sbjct: 60   YDGDQNPLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                +EG   L  L S     +      R+    + +  + G+I  TG  SG +      
Sbjct: 120  WAKDSEGLHNLFRLSSLAS-YEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRL 177

Query: 162  NSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
               + A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S +
Sbjct: 178  GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            ++E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ + 
Sbjct: 238  VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
                   +V   +         +   + +E+ LR K   GL+ +            ++  
Sbjct: 298  EMIGSYDEVFKYVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVL 349

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RL+ EL+VI  + FS YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  I+PL
Sbjct: 350  ERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPL 409

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++AKAA+
Sbjct: 410  EHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAAV 469

Query: 459  RDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVD 509
            +D  R L  P++  D++ K +P D     V L  I D S         FR+    +P V 
Sbjct: 470  KDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDVA 529

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ GL+
Sbjct: 530  KVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLM 589

Query: 570  KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K DFLGL+ L ++   +  +   RG+ VDL  I  DD  TY +L    TLG+FQL+ + M
Sbjct: 590  KMDFLGLRNLGIMDHCIKIIKANRGIDVDLKSIALDDKTTYEMLARGDTLGVFQLDGTAM 649

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPML 682
            R  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP +    D +L
Sbjct: 650  RSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEIL 709

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
              T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G S
Sbjct: 710  APTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYS 769

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
                  +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +K+
Sbjct: 770  DDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKM 829

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861
              +  D R  +I ++PP VN   ++F      I + L AI+ VG      I+ A   + P
Sbjct: 830  AMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRAREENGP 889

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
                  F  +V     N+R++ESL+ AGA D  G+SR  L+            +++N+ N
Sbjct: 890  APDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQAN 949

Query: 922  KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
              +++F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L   
Sbjct: 950  GQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAE 1009

Query: 979  GIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  E V           +  MV    ++ T+ G     VT  +         FP
Sbjct: 1010 SDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066


>gi|315926833|gb|EFV06207.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni
            DFVF1099]
          Length = 1088

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1058 (35%), Positives = 586/1058 (55%), Gaps = 47/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGIEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180
            I    L++  +EGLI  +    G ++                  + A++  L +KK+F D
Sbjct: 118  INKKLLEDY-SEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL------------- 285
            ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L             
Sbjct: 237  LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296

Query: 286  -QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
             +          E+  +     ++         GLE RL           ++Y+QRL+ E
Sbjct: 297  REYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLEERLK---FIDESKHEEYKQRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354  INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KL+P +    +       + + +E     P    + E ++ LEGL R+
Sbjct: 474  CDMSIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIDRHPKGLEVWEYARALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583  QKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R  K  +   I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            S+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D  
Sbjct: 833  SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893  KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952

Query: 936  DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++    K        +   E+ +LG Y SGHPLD +   +  +      +  +      
Sbjct: 953  VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I     +   +   ++   R G +   +    ++A  F
Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050


>gi|328881766|emb|CCA55005.1| DNA polymerase III alpha subunit [Streptomyces venezuelae ATCC 10712]
          Length = 1179

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/1068 (31%), Positives = 533/1068 (49%), Gaps = 49/1068 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ +         IA++D  NL  A +F   A  
Sbjct: 1    MTKPP-FTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHSAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +  +   G   L  
Sbjct: 60   AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANNTGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EGLI  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGELQTRLRLGQFDEALKSASEY 178

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG DR ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEAAAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             +     +S  DR R     Y    S       D  +A +         +  +      +
Sbjct: 239  CIQTGKNLSDPDRFRFDGTGYYLK-STDEMYAVDSSDAWQEGCRNTLLVAEQVSTDGMFV 297

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             + +  + D      E    R + + G+  R   G        +D  +++++E++ I  M
Sbjct: 298  EKNLMPKFDIPEGYTEVTWFREETMRGMHRRFPDG------IPEDRMKQVEYEMDTIISM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAKK  I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIMWAKKQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+ 
Sbjct: 412  RISMPDVDIDFDERRRVEVIRYVTEKYGSDKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471

Query: 472  VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DRL K +P D     +        S    ++    R     +P V ++++ ++ +EGL 
Sbjct: 472  GDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRAMYENEPDVKKVIDTARGVEGLV 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ LT++
Sbjct: 532  RQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  +   +G+ +DL  +P DD +T+ LL    TLG+FQ +   MR  L  M+PD  E
Sbjct: 592  DDAVKMVKANKGIDLDLLALPLDDPKTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFE 651

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695
            DI A+ +LYRPGP+       Y  RKNG+++I  IHP ++  L+E    T G+I+YQEQV
Sbjct: 652  DISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEKPLEEVLAVTYGLIVYQEQV 711

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+++GYSL EAD+LRR MGKK  EE+ K    F +GA K G S      ++++L  
Sbjct: 712  QKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFVIFEAGAKKKGFSDEAIKALWDVLVP 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H+AAY ++SY TA++K +YP E++A  +T   D+ +K   +  + R+  I+
Sbjct: 772  FAGYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAGLLTSVKDDKDKSAVYLNECRRMGIK 831

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            ++PP+VN    +F   GD+ I + L+A++ VGT     I++       + +  DF  +V+
Sbjct: 832  VLPPNVNESESNFAAQGDDVILFGLSAVRNVGTNVVESIIKTRKAKGKYSTFPDFLDKVE 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +   N+R +ESL+ AGA D  G++R  L+   + +      V++       ++F      
Sbjct: 892  AVVCNKRTIESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVAVKRKEAEGQFDLFGGMGDE 951

Query: 934  FSDKI------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
             +D+                 S     E+ +LG Y S HPL   + +L         +  
Sbjct: 952  STDEPGFGLDVEFSDV-EWEKSYLLAQEREMLGLYVSDHPLFGIEHVLSDKTDAAISQLT 1010

Query: 988  --ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1011 GGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|167005356|ref|ZP_02271114.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. jejuni
            81-176]
          Length = 1169

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1058 (36%), Positives = 589/1058 (55%), Gaps = 47/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180
            I    L++  +EGLI  +    G ++                  + A++  L +KK+F D
Sbjct: 118  INKKLLED-HSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV-----HAPILP 293
            ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +           
Sbjct: 237  LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLDLNLGNPTPPNFKFT 296

Query: 294  RFIEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            R   K+ + I  EE  E                GLE RL           ++Y+QRL+ E
Sbjct: 297  REYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEERLK---FIDESKHEEYKQRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354  INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KL+P +    +       + + +E     P    + E ++ LEGL R+
Sbjct: 474  CDMSIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583  QKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R  K  +   I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            S+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D  
Sbjct: 833  SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893  KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952

Query: 936  DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++    K        +   E+ +LG Y SGHPLD +   +  +      +  +      
Sbjct: 953  VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I     +   +   ++   R G +   +    ++A  F
Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050


>gi|313820452|gb|EFS58166.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL036PA1]
 gi|313822742|gb|EFS60456.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL036PA2]
          Length = 1190

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/1077 (31%), Positives = 540/1077 (50%), Gaps = 59/1077 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S  FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +  
Sbjct: 1    MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59

Query: 65   AG------IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVL 101
                    I+PIIG +  +                    D      +  +       + +
Sbjct: 60   YDGDQNPLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                +EG   L  L S     +      R+    + +  + G+I  TG  SG +      
Sbjct: 120  WAKDSEGLHNLFRLSSLAS-YEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRL 177

Query: 162  NSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
               + A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S +
Sbjct: 178  GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            ++E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ + 
Sbjct: 238  VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
                   +V   +         +   + +E+ LR K   GL+ +            ++  
Sbjct: 298  EMIGSYDEVFKYVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVL 349

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RL+ EL+VI  + FS YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  I+PL
Sbjct: 350  ERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPL 409

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++AKAA+
Sbjct: 410  EHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAAV 469

Query: 459  RDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVD 509
            +D  R L  P++  D++ K +P D     V L  I D S         FR+    +P V 
Sbjct: 470  KDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDVA 529

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ GL+
Sbjct: 530  KVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLM 589

Query: 570  KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K DFLGL+ L ++   +  +   RG+ VDL  I  DD  TY +L    TLG+FQL+ + M
Sbjct: 590  KMDFLGLRNLGIMDHCIKIIKANRGIDVDLKSIALDDKTTYEMLARGDTLGVFQLDGTAM 649

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPML 682
            R  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP +    D +L
Sbjct: 650  RSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEIL 709

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
              T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G S
Sbjct: 710  APTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYS 769

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
                  +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +K+
Sbjct: 770  DDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKM 829

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861
              +  D R  +I ++PP VN   ++F      I + L AI+ VG      I+ A   + P
Sbjct: 830  AMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRAREENGP 889

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
                  F  +V     N+R++ESL+ AGA D  G+SR  L+            +++N+ N
Sbjct: 890  APDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQAN 949

Query: 922  KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
              +++F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L   
Sbjct: 950  GQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAE 1009

Query: 979  GIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  E V           +  MV    ++ T+ G     VT  +         FP
Sbjct: 1010 SDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066


>gi|33151745|ref|NP_873098.1| DNA polymerase III subunit alpha [Haemophilus ducreyi 35000HP]
 gi|33147966|gb|AAP95487.1| DNA polymerase III alpha subunit [Haemophilus ducreyi 35000HP]
          Length = 1158

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1048 (39%), Positives = 608/1048 (58%), Gaps = 39/1048 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P FVHL+VHS +S++ G   +  ++   AA Q  A+A+TD +N    ++F  ++  
Sbjct: 1    MTQ-PRFVHLKVHSDFSMINGLAKVKALVKTAAAKQMAAMALTDFSNFCGLVKFYGESLT 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PIIG  + +          +       +  + LL    +GY  +  L+SR Y    
Sbjct: 60   AGLKPIIGADIYV----------RSDPTSEDIFELTLLAKNNQGYHNITVLLSRAYQQGY 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              +   +  +WL E+  EG+I+L+GG SG + +A    + Q A   +  +++ F D  Y+
Sbjct: 110  V-EFPIVEKAWLAEL-NEGIIVLSGGRSGDVGKALLKENEQEAATLVAFYQQYFADHYYL 167

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +L R    D  R   Q VQ A  ++LPLVA N+ +FL E+D++AH++ +A+  S  +   
Sbjct: 168  SLCRTGRSDEERYLQQAVQFAKKYQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDP 227

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  + +P  Y ++  EM ++F+DLP+AL N+++IA RC+  +++       +       
Sbjct: 228  KRPQKYSPQQYFRSEEEMCALFADLPQALMNSIQIAMRCNVTIRLGE-----YFLPNFPT 282

Query: 303  IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +   E+ L  K+  GLE RLA     A  +      Y +RL  EL+VI +M F GYFLI
Sbjct: 283  GELSTEDFLIKKSQEGLEERLAFLFPDAETRKNKRSVYDERLQVELDVINQMGFPGYFLI 342

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL+F LLFERFLNP+R+SMPDFD
Sbjct: 343  VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLQFDLLFERFLNPERISMPDFD 402

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFC D RD VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY+ VDR+ KLI
Sbjct: 403  VDFCMDGRDHVIEHVADTYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLI 462

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 463  PADPGMTL-AKAFEAEPKLPELYNADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAI 521

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
            +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +L+ + QR       
Sbjct: 522  TDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLTREGKP 581

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             + +  IP DD  ++ LL    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP
Sbjct: 582  PIRIENIPLDDKPSFKLLLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGP 641

Query: 655  IDNIVVYNN-------RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +++ +V N         +         H  + P+L+ T G+I+YQEQVMQIAQ L+GY+L
Sbjct: 642  LESGMVQNFIDRKHGIEEVSYPDAQYQHECLKPILEPTYGIIVYQEQVMQIAQELAGYTL 701

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              AD+LRRAMGKK  EEM  Q++ F  GA + GI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 702  GSADLLRRAMGKKKPEEMAAQRDIFEKGAIEKGIDGQLAIKIFDLVEKFAGYGFNKSHSA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA++SYQT W+K HYP EF+AA MT EMDN +KI     +     + ++PP VN+    
Sbjct: 762  AYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVGLYDECINMGLTVVPPDVNSGKHR 821

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V +  +I Y L AIKGVG      I+EA      F  L D  +RVD KK+NRR  ESL
Sbjct: 822  FSVNEKGQIVYGLGAIKGVGEGPIEAILEARNKGGIFKDLFDLTARVDLKKINRRTFESL 881

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + +GA D  G  R  L+++L++  K +    K       ++F     T    +       
Sbjct: 882  IMSGAFDKLGPHRAALMKNLEDALKASDQHSKMEALGQSDMFGVLTETPEQVQKAYANTP 941

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +     E E+  LG Y SGHP+  +   L         E   T RG  + +A ++V+ 
Sbjct: 942  KWSEQAVLEGERTTLGLYLSGHPIGRFLKELAHYAPTRLNELQPTRRGQMVTVAGIIVAS 1001

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   T++GSR+G  T  + A + +   F
Sbjct: 1002 RIAVTKRGSRLGIATLEDRAGKIDITLF 1029


>gi|256379743|ref|YP_003103403.1| DNA polymerase III subunit alpha [Actinosynnema mirum DSM 43827]
 gi|255924046|gb|ACU39557.1| DNA polymerase III, alpha subunit [Actinosynnema mirum DSM 43827]
          Length = 1176

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/1061 (32%), Positives = 526/1061 (49%), Gaps = 42/1061 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SF HL VH+ YS+L+GA  L ++  +       A AITD  N++ A +F ++A AAG+
Sbjct: 2    SDSFAHLHVHTEYSMLDGAAKLKDMFAECERLGMTAAAITDHGNMYGAYDFFRQATAAGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +P+IG +  +  +                    +         +   T +G   L++  S
Sbjct: 62   KPVIGIEAYMAPESRFNKKRVTWGDPGQKADDVSASGAYTHQTIWARTVDGLHNLMKCSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
            R     Q  +  R+    L E  ++GL+  TG  SG +         + A +    ++++
Sbjct: 122  RASTEGQLGKWPRMDAELLAE-HSKGLMATTGCPSGEVQTRLRLGHEKEAIEAAGKWREI 180

Query: 178  FG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            +G D  +V L  H    +R     +V +A   ++P V TN+S +   ED EAH+ L+ V 
Sbjct: 181  YGADNFFVELMDHGIELERRVRDGLVDIARKLDIPFVVTNDSHYTYAEDREAHEALLCVQ 240

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                +    R +     Y     + +          E           +           
Sbjct: 241  TGKTLQDPSRFKFDGTGYYLKSPQEMYAIDSSDAWQEGCRNTLLVAEKVDTTDMFAFQNL 300

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            + +        E +  R +   G+  R  +G        + + ++++FE+ VI +M F  
Sbjct: 301  MPRYPVPEGMTEADYFREQVWEGMRRRFPEGVD------EVHTKQVEFEIGVILQMGFPS 354

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+VADFI WAK+N I VGPGRGS AG++ AYA+ ITD+DPL   L+FERFLNPDR+S 
Sbjct: 355  YFLVVADFINWAKENGIRVGPGRGSAAGALIAYAMGITDLDPLAHGLIFERFLNPDRVSP 414

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR--ALQMPYSQVD 473
            PD DIDF + RR +VIRYV +K+G ++VAQ+ITFG+++AKAA++D  R    Q  Y+  D
Sbjct: 415  PDIDIDFDERRRGDVIRYVTDKWGDDKVAQVITFGTIKAKAAIKDSARVLYGQPGYAVAD 474

Query: 474  RLCKLIPN-DPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            R+ K +P       +          +  A+ S  R     DP V  +++  + LEGL R+
Sbjct: 475  RISKAMPPAVMGKDIPLSGIFDPQHKRYAEASEVRGLYDTDPQVKEIIDTGRGLEGLIRN 534

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            A  HA  +++   PL   +P+++  +    +TQF+    E  GL+K DFLGL  LT +  
Sbjct: 535  AGVHACAVIMSAEPLMDHIPVWKRPQDGSIITQFDYPTCETLGLLKMDFLGLSNLTTIDD 594

Query: 585  SLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +L  +A      VDL  +   D +TY LL+   TLG+FQL+   MR  L  M+PD  EDI
Sbjct: 595  ALKNMAINGKEPVDLDKLELTDKKTYQLLSKGDTLGVFQLDGGPMRDLLRLMRPDNFEDI 654

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQ 697
             A+ +LYRPGP+  ++   Y  RKN  ++I  IHP +   L++    T G+I+YQEQVM 
Sbjct: 655  SAVGALYRPGPMGANSHTNYALRKNKLQEITPIHPSLAEALEDILGTTYGLIVYQEQVMA 714

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IAQ L+GY+L +AD+LRRAMGKK KE +DK+   F +G   NG        ++E+L  FA
Sbjct: 715  IAQKLAGYTLGQADLLRRAMGKKKKEILDKEFAGFEAGMLANGFPADAIKTLWEILVPFA 774

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            DY FNK+H+AAY ++SY TA++K +YP EF+AA +T   DN +K   +  + R+  I ++
Sbjct: 775  DYAFNKAHSAAYGLVSYWTAYLKANYPAEFMAALLTTNSDNKDKSAIYLAECRRMGITVL 834

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876
            PP VN    +F      + + L AI+ VG      I++A  +   F    DF  +VD+  
Sbjct: 835  PPDVNESEREFVAVGEDVRFGLGAIRNVGANVVDAIIKARKEKGRFTDFSDFLRKVDATV 894

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             N++V+ESL+ AGA D   + R  L              +K       ++F       + 
Sbjct: 895  CNKKVVESLIKAGAFDSLNHPRKGLHMVHVEAVDAIMLTKKEEARGQFDLFGDGGDDGNG 954

Query: 937  KITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRG 992
             +   +       S  +   E+ +LG Y SGHPL+  + +L           +      G
Sbjct: 955  SVFDVRIPEEHWESKHQLTLEREMLGLYVSGHPLNGVEQVLDSYSDASIARILEGDVADG 1014

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + L  ++ S  ++  + G         + A   E  FFP
Sbjct: 1015 TQVTLGGILASVTRRVNKNGEPWASAMLEDLAGGIEVLFFP 1055


>gi|311895500|dbj|BAJ27908.1| putative DNA polymerase III subunit alpha [Kitasatospora setae
            KM-6054]
          Length = 1175

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/1063 (30%), Positives = 533/1063 (50%), Gaps = 43/1063 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P + HL VH+ YS+L+GA  L  +  ++    Q  +A+TD  N++ A EF ++A A
Sbjct: 1    MSDQP-YAHLHVHTEYSMLDGAARLKQLFAEVGRLGQTHVAMTDHGNMYGAAEFHKQAVA 59

Query: 65   AGIQPIIGCQLDIDMQDN----------LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AGI P+IG +  +  +                    +         +     EG   L +
Sbjct: 60   AGITPVIGIEAYVAPESRSNTKRILWGQPHQKRDDVSASGAYTHKTIWARNKEGLHNLFK 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L SR Y      +  R+    + E    GL+  TG  SG +           A +    +
Sbjct: 120  LTSRSYAEGWLVKWPRMDKEIIAE-HAAGLMATTGCPSGEVQTRLRLGQFDEALRSAGEY 178

Query: 175  KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +++FG +  ++ L  H    +      +V++     +P V TN+S + +E D  AHD+L+
Sbjct: 179  QEIFGRENYFLELMDHGLEIEGRVRDGLVEIGRRLNIPPVVTNDSHYTTEADAGAHDLLL 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             V     +S  DR R     Y    +  +          E         +  +       
Sbjct: 239  CVQTGKNLSDPDRFRFDGTGYYVKSAAEMYGLDSSDIWQEGCRNSQLLVAERVDTTGMFE 298

Query: 293  PRFIEKECDDIQ--KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             + +       +    E    R K   G++ R   G        +++R+  ++E++ I +
Sbjct: 299  FKNLMPRFPIPEGFGSEAEFFRAKVWEGMDRRFPGGYD------EEHRELAEYEMDTIVQ 352

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F  YFL+VADFI WAK   I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP
Sbjct: 353  MGFPAYFLVVADFIMWAKSQGIAVGPGRGSAAGSLVAYAMGITDLDPIPHGLIFERFLNP 412

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPD DIDF + RR +VIRYV  K+G ++VA I+T+G+++AKAA++D  R L  PY+
Sbjct: 413  ERVSMPDVDIDFDERRRADVIRYVTEKWGSDKVAMIVTYGTIKAKAAIKDSSRVLGYPYA 472

Query: 471  QVDRLCKLIPND---PAHPVS------LQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
              DR+ K +P D      P+S           +    R     DP V ++++ ++ +EGL
Sbjct: 473  MGDRITKAMPPDVMGKGIPLSGITDSAHPRYGEAGEIRALYENDPDVKKVIDTARGIEGL 532

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R    HAAG+++   PL+  +P++      + +TQF+    E  GL+K DFLGL+ LT+
Sbjct: 533  IRQPGVHAAGVIMSAEPLTDHIPVWTRHTDGVTITQFDYPTCEGLGLLKMDFLGLRNLTI 592

Query: 582  LQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  ++      +GV+++L  +P DD   Y LL    TLG+FQL+   MR  L  M+PD  
Sbjct: 593  MDDAVKAIERNKGVRIELLQLPLDDKPAYELLARGDTLGVFQLDGGPMRSLLRLMKPDNF 652

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQ 694
            EDI A+++LYRPGP+  ++   Y  RKNG+++I  IHP +       L+ T G+I+YQEQ
Sbjct: 653  EDISAVLALYRPGPMGVNSHTNYALRKNGQQEITPIHPELAEPLREVLEPTYGLIVYQEQ 712

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            V + AQ+L+GYSL +AD+LRRAMGKK KE ++ +   F  G  + G S      ++++L 
Sbjct: 713  VQKAAQILAGYSLGQADLLRRAMGKKKKEILEAEFVPFQRGCRERGYSDAAIQAVWDVLV 772

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+ Y FNK+H A Y ++SY TA++K +YP E+++A +T   D+ +K   +  + R+  I
Sbjct: 773  PFSGYAFNKAHTAGYGLVSYWTAYLKANYPAEYMSALLTSVKDDKDKSAVYLNECRKMGI 832

Query: 815  QIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRV 872
            Q++PP VN    DF       + + L AI+ VG      ++        + S  DF  +V
Sbjct: 833  QVLPPDVNESDADFTPHGSETVRFGLTAIRNVGGPVVESMIRTRKAKGKYTSFPDFLEKV 892

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HE 930
            +S   N+R +ESL+ AGA D  G++R  L    + +      +++       ++F    +
Sbjct: 893  ESVVCNKRTVESLIKAGAFDSLGHTRKGLSAQFEPMIDNVVGIKRKEAEGQFDLFETVSD 952

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
            + +F   +   +       V   +E+ +LG Y S HPL   + +L         +     
Sbjct: 953  EPSFGLDVVFAE-DEWEKPVLLTHEREMLGLYVSSHPLHGIEHVLADKADCAVADLAERP 1011

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G  + +  ++   Q+K T++G+     T  + A   +  FFP
Sbjct: 1012 DGVTVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIDCMFFP 1054


>gi|86149829|ref|ZP_01068058.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni
            CF93-6]
 gi|88596922|ref|ZP_01100158.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni
            84-25]
 gi|218562357|ref|YP_002344136.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. jejuni
            NCTC 11168]
 gi|14194692|sp|Q9PPI9|DPO3A_CAMJE RecName: Full=DNA polymerase III subunit alpha
 gi|85839647|gb|EAQ56907.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni
            CF93-6]
 gi|88190611|gb|EAQ94584.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni
            84-25]
 gi|112360063|emb|CAL34855.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
            NCTC 11168]
 gi|284925974|gb|ADC28326.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. jejuni
            IA3902]
 gi|315930589|gb|EFV09621.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. jejuni
            305]
          Length = 1200

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1058 (35%), Positives = 586/1058 (55%), Gaps = 47/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGIEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180
            I    L++  +EGLI  +    G ++                  + A++  L +KK+F D
Sbjct: 118  INKKLLEDY-SEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL------------- 285
            ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L             
Sbjct: 237  LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296

Query: 286  -QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
             +          E+  +     ++         GLE RL           ++Y+QRL+ E
Sbjct: 297  REYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLEERLK---FIDESKHEEYKQRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354  INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KL+P +    +       + + +E     P    + E ++ LEGL R+
Sbjct: 474  CDMSIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIDRHPKGLEVWEYARALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583  QKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R  K  +   I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            S+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D  
Sbjct: 833  SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893  KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952

Query: 936  DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++    K        +   E+ +LG Y SGHPLD +   +  +      +  +      
Sbjct: 953  VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I     +   +   ++   R G +   +    ++A  F
Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050


>gi|307331654|ref|ZP_07610761.1| DNA polymerase III, alpha subunit [Streptomyces violaceusniger Tu
            4113]
 gi|306882680|gb|EFN13759.1| DNA polymerase III, alpha subunit [Streptomyces violaceusniger Tu
            4113]
          Length = 1181

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/1070 (31%), Positives = 528/1070 (49%), Gaps = 51/1070 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ +         IA+TD  NL  A +F Q+A  
Sbjct: 1    MTKPP-FTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMTDHGNLHGAYDFYQQATG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +  +   G   L  
Sbjct: 60   AGVTPIIGIEAYVAPESRRYKRRVQWGQPHQKRDDVSGSGGYTHKTIWAADKTGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y+     +  R+    + +  +EGLI  TG  SG +           A K    +
Sbjct: 120  LSSDAYMEGYFVKWPRMDKETIAQW-SEGLIASTGCPSGELQTRLRLGQFDEAVKAASEY 178

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG DR ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIEIERRVRDGLLEVGKKLGIPPLVTNDSHYTYSRESVAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             V     +S  DR R     Y    S       D  +A +         +  +       
Sbjct: 239  CVQTGKNLSDPDRFRFDGTGYYLK-STDEMYAIDSSDAWQEGCRNTLLVAEQIDATGWFE 297

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             R +    D      E    + +   G+  R   G        +D ++  ++E++VI +M
Sbjct: 298  KRDLMPRFDVPEGYTEVTWFQEEVRKGMARRFPGGV------PEDRQKLAEYEMDVIIQM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAK N I VGPGRGS AGS+ +YA+ ITD+DP+   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVSYAMGITDLDPVEHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYGH++VAQI T+G+++AK A++D  R L  PY+ 
Sbjct: 412  RVSMPDVDIDFDERRRGEVIRYVTEKYGHDKVAQIGTYGTIKAKNAIKDSARVLGYPYAM 471

Query: 472  VDRLCKLIPND---PAHPVSLQAIADDS------RFREARLADPSVDRLLEISQKLEGLY 522
             DR+ K +P D      P+S                R     +P V ++++ ++ +EGL 
Sbjct: 472  GDRITKAMPADVLGKGIPLSGITDEKHPRYSEAGEVRGMYENEPDVKKVIDTARGIEGLV 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++    ++  VP++        VTQ++    E  GL+K DFLGL+ LT++
Sbjct: 532  RQMGVHAAGVIMSSETVTDHVPVFSPKNDGQVVTQWDYPTCESLGLLKMDFLGLRNLTIM 591

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  +   +G+ + +  +  DD +T+ LL    TLG+FQ +   MR  L  M+PD  E
Sbjct: 592  DDAVKMVRANKGIDLKMLDLSLDDPKTFELLCRGDTLGVFQFDGGPMRSLLRMMKPDNFE 651

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQV 695
            DI A+ +LYRPGP+     + Y  RKNG+++I  IHP ++  LK     T G+I+YQEQV
Sbjct: 652  DISAVSALYRPGPMGMNSHINYALRKNGQQEITPIHPELEEPLKEVLGITHGLIVYQEQV 711

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+L+GYSL +AD+LRRAMGKK +E +DK+   F  G      S      ++++L  
Sbjct: 712  QKAAQVLAGYSLGQADLLRRAMGKKKQEVLDKEFVPFQKGMRDRDYSDQAIQAVWDVLVP 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+  I+
Sbjct: 772  FAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVRDDKDKSAVYLNECRRMGIK 831

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            ++PP+VN    +F   GD+ I + L A++ VG      I+        + S  D+  +V+
Sbjct: 832  VLPPNVNESEANFTAQGDDVILFGLTAVRNVGQNVVEAIIRGRKAKGKYASFPDYLDKVE 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F    G 
Sbjct: 892  AVVCNKRTTESLIKAGAFDEMGHTRKGLTAHYEALIDNVVAVKRKEAEGQFDLFGGMAGD 951

Query: 934  FSD--------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
              D         +          +     E+ +LG Y S HPL   + +L +        
Sbjct: 952  GGDGEGPGFGLDVEFSDV-EWEKTYLLAQEREMLGLYVSDHPLFGIEHVLNEKADAAISA 1010

Query: 986  SV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1011 LTGGEHADGAIVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1060


>gi|283953915|ref|ZP_06371444.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
            414]
 gi|283794520|gb|EFC33260.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
            414]
          Length = 1200

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1058 (36%), Positives = 589/1058 (55%), Gaps = 47/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGIEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180
            I    L+E  +EGLI  +    G ++                  + A++  L +KK+F D
Sbjct: 118  INKKLLEEY-SEGLICSSACLQGEVNWHLNTYNERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  ++   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKDRAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV-----HAPILP 293
            ++   R R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +           
Sbjct: 237  LNDPGRIRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296

Query: 294  RFIEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            R   KE + I  EE  E                GLE RL           ++Y+QRL+ E
Sbjct: 297  REYAKEYNIILPEETKEFSFDNDDIVFEELCKKGLEERLK---FINESKHEEYKQRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354  INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KL+P +    +       + + +E          + E ++ LEGL R+
Sbjct: 474  CDMSIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIERHHKGFEVWEYAKALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583  QKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R  K  +   I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESDGMQSLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIKYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G ++T A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKIDFADGAEKQGYNRTEAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            S+N    +F      G + I Y L AIK VG     +++EA  +  F  + DF  ++D  
Sbjct: 833  SINKAIREFSALEQDGRDAIIYGLGAIKSVGIPAVENLLEARQNGEFKDINDFLGKIDPT 892

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893  KVNRRTLESLIKAGAFDEFGFTRKALFDNMENLSEVSRKMAEVRKNAASSLFGEEELTSG 952

Query: 936  DKIT-LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++  + K        + E E+ +LG Y SGHPLD +   +  +      +         
Sbjct: 953  VQVNFIPKNEEFEVMEKLEYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFENLKNNGE 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I     +   +   ++   R G +   +    ++   F
Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRLEILDYYSSFDTTVF 1050


>gi|288929494|ref|ZP_06423338.1| DNA polymerase III, alpha subunit [Prevotella sp. oral taxon 317 str.
            F0108]
 gi|288328999|gb|EFC67586.1| DNA polymerase III, alpha subunit [Prevotella sp. oral taxon 317 str.
            F0108]
          Length = 1249

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1110 (32%), Positives = 571/1110 (51%), Gaps = 91/1110 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66
             FVHL VH+ YS+L+G  S+  ++DK  A+    +A+TD  N+F   EF           
Sbjct: 17   DFVHLHVHTYYSILDGQSSIQRLVDKAIANGMGGMALTDHGNMFGTKEFFNYCKKVNGKR 76

Query: 67   -------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                    +PIIGC++ +          +      +   +++L     GY+ L +LVSR 
Sbjct: 77   KEEGLPEFKPIIGCEMYVARHRKTDKVKENGDM--SGYHLIVLAKNYTGYKNLTKLVSRA 134

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            + +D      R     L+    EGLI+ +   +G + R    N  + A +    + ++FG
Sbjct: 135  W-VDGYYMRPRTDREDLETYH-EGLIVCSACIAGEVPRKILRNDIEGAREAAQWYHRVFG 192

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     ++++A    + +V TN++ F+ +E+ E
Sbjct: 193  DDYYLELQRHEVKDPHIRANREAFPLQQRANKVMLEMAEEMGIKVVCTNDAHFVDQENAE 252

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++    +    R   +   + K R EM  +F DLP+A+ NTVEI  +      
Sbjct: 253  AHDHLLCLSTGKDLDDPTRMLYSKQEWFKTREEMNEVFGDLPQAMRNTVEILNKVETYSI 312

Query: 287  VHAPILPRFIEKECDDIQKE-----EENELRNKA------------VAGLEVRLAQGAIA 329
             H+PI+P F   E    +++      E EL ++               G E     G   
Sbjct: 313  DHSPIMPFFPIPEDFGTEEQWRQRISEKELYDEFTSDENGQNQLPPEEGEEKIKKLGGYE 372

Query: 330  KGYH------------------------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            K Y                          ++ R+R++FEL+++  M F GYFLIV DFI 
Sbjct: 373  KLYRIKFEADYLAKLAYDGAKKLYGEPLTEEVRERVNFELHIMKTMGFPGYFLIVQDFIN 432

Query: 366  WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             A+   ++ VGPGRGS AGSV AY L IT IDP+++ LLFERFLNPDR+S+PD D DF  
Sbjct: 433  TAQNELDVMVGPGRGSAAGSVVAYCLGITKIDPIKYDLLFERFLNPDRISLPDIDTDFDD 492

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D R  V+ +V++KYGH++VA IIT+G++  K +++DVGR  ++P   V+ LCKLIP+   
Sbjct: 493  DGRGRVLEWVEDKYGHDKVAHIITYGTMATKNSIKDVGRVEKVPLKIVNDLCKLIPDKLP 552

Query: 485  HPVSL---QAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              + +    AI      REA  + D  +   +  ++ LEG  R    HA G +I    +S
Sbjct: 553  DGLKMSVANAIKAIPELREAEASADEGLRNTMMYAKMLEGTVRGTGIHACGTIICRDAIS 612

Query: 541  QLVPMYR-----DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV 594
              VP+       D    L  TQ++   IE+ GLIK DFLGLKTL++L+++++ +    G 
Sbjct: 613  DWVPVSTAEDKADPGHKLLCTQYDGHVIEETGLIKMDFLGLKTLSILKEAVENVRLSTGK 672

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             ++L  IP DD  TY L     T+G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP
Sbjct: 673  TINLEEIPIDDPLTYKLYCEGRTIGTFQFESAGMQKYLRELQPTVFEDLIAMNALYRPGP 732

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +  RK    ++    P ++  LK+T G+ +YQEQVM +++ L+ ++  ++D LR
Sbjct: 733  MDYIPEFIARKRDPSRVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGQSDTLR 792

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +AMGKK+  +MDK +  F  G  KNG  K +   I+E   KFA Y FNKSHA  Y+ +++
Sbjct: 793  KAMGKKLIAQMDKLETLFYEGGMKNGHPKEVLNKIWEDWKKFASYAFNKSHATCYSWVAF 852

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-N 833
            QTA+ K HYP E++AA M+  + N+ +I KF  + R   I+ + P VN   + F V    
Sbjct: 853  QTAYFKAHYPAEYMAAVMSRNLANISEITKFMDECRVMGIKTLGPDVNESRLKFSVNKHG 912

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I + LAAIKG+G   A+ I++    + P+ S+ D   RV+   +N++ +ESL  +G  D
Sbjct: 913  EIRFGLAAIKGMGDAAAQAIIQEREKNGPYTSVFDMVQRVNLSSVNKKAIESLALSGGFD 972

Query: 893  CFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              G +R   L +       +DN+ +Y Q  +  +     ++F            + +   
Sbjct: 973  SLGIARENYLGTDSKGATFIDNLTRYGQLFQMEQQQMQNSLFGASNAVEVSTPPVPQAER 1032

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIRLAAMVV 1002
             +S  R   E+ ++G Y S HPLD YK +L+ M   G  E    +A ++   + LA MV 
Sbjct: 1033 WSSIERLNKERDLVGIYLSAHPLDDYKIVLQSMCNTGCNELEDRMALVQKAEVTLAGMVT 1092

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T+ G   G+VT  + +   E  FF
Sbjct: 1093 NTRSAVTKTGKPCGFVTIEDYSGSGELAFF 1122


>gi|57237020|ref|YP_178822.1| DNA polymerase III subunit alpha [Campylobacter jejuni RM1221]
 gi|57165824|gb|AAW34603.1| DNA polymerase III, alpha subunit [Campylobacter jejuni RM1221]
 gi|315058181|gb|ADT72510.1| DNA polymerase III alpha subunit [Campylobacter jejuni subsp. jejuni
            S3]
          Length = 1200

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/1055 (36%), Positives = 587/1055 (55%), Gaps = 41/1055 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180
            I    L++  +EGLI  +    G ++                  + A++  L +KK+F D
Sbjct: 118  INKKLLEDY-SEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV-----HAPILP 293
            ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +           
Sbjct: 237  LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA------KGYHAQDYRQRLDFELNV 347
            R   K+ + I  EE  E        +   L +  +            ++Y+QRL+ E+N+
Sbjct: 297  REYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLKERLKFIDESKHEEYKQRLEVEINI 356

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLFERF
Sbjct: 357  IKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLFERF 416

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R   M
Sbjct: 417  LNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARVCDM 476

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
                 D L KL+P +    +       + + +E     P    + E ++ LEGL R+A  
Sbjct: 477  SIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIDRHPKGPEVWEYARALEGLNRNAGM 535

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++  +
Sbjct: 536  HAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVINNA 595

Query: 586  LDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            +  + +R  K  +   I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  EDII
Sbjct: 596  IKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFEDII 655

Query: 645  ALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            A+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI Q++
Sbjct: 656  AVLALYRPGPMESGMLDDFIDRKHGLKNIEYPFDSLEKVLEPTYGVIVYQEQVMQIVQII 715

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
             G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA YGFN
Sbjct: 716  GGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRVKAEDLWELIVKFAGYGFN 775

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            KSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PPS+N
Sbjct: 776  KSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPPSIN 835

Query: 823  TPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
                +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D  K+N
Sbjct: 836  KAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPTKIN 895

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            RR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T   ++
Sbjct: 896  RRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSGVQV 955

Query: 939  TL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
                K        +   E+ +LG Y SGHPLD +   +  +      E         I  
Sbjct: 956  NFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLEFEGLKNNGEILS 1015

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +   +   ++   R G +   +    ++A  F
Sbjct: 1016 IGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050


>gi|302383614|ref|YP_003819437.1| DNA polymerase III subunit alpha [Brevundimonas subvibrioides ATCC
            15264]
 gi|302194242|gb|ADL01814.1| DNA polymerase III, alpha subunit [Brevundimonas subvibrioides ATCC
            15264]
          Length = 1162

 Score =  726 bits (1875), Expect = 0.0,   Method: Composition-based stats.
 Identities = 498/1045 (47%), Positives = 679/1045 (64%), Gaps = 28/1045 (2%)

Query: 2    TQYLEKSPS---FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
             Q +  +P+   FVHL+V S+YSLLEGA+    +    A    PA+ + D  NLF ALEF
Sbjct: 10   VQAISDTPAQTGFVHLRVRSAYSLLEGAIKAGKVGKLAADAGMPAVGVADRVNLFGALEF 69

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            S+ A + G+QP+I C L +      +     K P      +VL+     G++ L  L S 
Sbjct: 70   SEAAKSVGVQPLIACALPVTGIGGKRTERWAKVPT-----VVLICQDEPGWRNLCALSSS 124

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             YL D G +   +    +    + GLI+L+GG  GP+D  F  N      + L      F
Sbjct: 125  AYL-DAGDEEPNVTWDQVVA-HSAGLILLSGGPDGPVDPLFVQNKPAEGARALAAMAGAF 182

Query: 179  GDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            GDR YV LQRH   D     + +V+ AY H++PLVATN+  +  +    +HD L+ +A  
Sbjct: 183  GDRFYVELQRHGRPDEAAAERGLVEWAYGHDVPLVATNDVHYARQNQARSHDALLCIADG 242

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                Q+DR R+T  H+ +  +EM ++F+DLPEA ++T+EIARRC+F+++ H PILPRF  
Sbjct: 243  AFTGQEDRRRITDQHFFRTAAEMRTLFADLPEACDSTIEIARRCAFLVKTHPPILPRFDT 302

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             +     + E +EL ++A  GL+ RL    +       DY  RL++E+ +I +M F GYF
Sbjct: 303  GDG----RTEPDELMHQAREGLKARLK--LVTPSAPEADYWTRLEWEVGIITQMGFPGYF 356

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV+DFI+WAK + IPVGPGRGSGAGS+ A+ALTITD+DPLRF LLFERFLNP+R+SMPD
Sbjct: 357  LIVSDFIKWAKSHGIPVGPGRGSGAGSLVAWALTITDLDPLRFGLLFERFLNPERVSMPD 416

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ+RR+EVI YVQ +YG +RVAQIITFG+LQA+A LRDVGR LQMP  QVDRL K
Sbjct: 417  FDIDFCQERREEVITYVQERYGKDRVAQIITFGTLQARAVLRDVGRVLQMPLGQVDRLAK 476

Query: 478  LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +IPN+PA+P +  QAI  + R REAR AD +V  LLE + +LEGLYR+ASTHAAGIVIGD
Sbjct: 477  MIPNNPANPTTLAQAIEIEPRLREARDADRAVATLLETALELEGLYRNASTHAAGIVIGD 536

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL +L P+Y+D RSD+P TQFNMKW+E AGL+KFDFLGLKTLT+L ++  +L++RG   
Sbjct: 537  RPLVELTPLYQDPRSDIPATQFNMKWVEPAGLVKFDFLGLKTLTVLDRAHGYLSRRGAAQ 596

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D +L+P DD +TY L+ +  T+G+FQLES GMR  L  M+   IE+I AL+SLYRPGP++
Sbjct: 597  DFNLLPLDDGKTYELMASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPME 656

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             I  Y +RK G+ ++  +HP +  +L ET GVIIYQEQVM+IAQ+L+GYSL EAD+LRRA
Sbjct: 657  MIDTYIDRKFGRAEVDYLHPSLTEVLTETYGVIIYQEQVMKIAQILAGYSLGEADLLRRA 716

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK KEEMD QK RFI GAS+  + +  + +IFEL+AKFA YGFNKSHAAAYA+ISYQT
Sbjct: 717  MGKKKKEEMDFQKARFIKGASEKSVPEQQSDSIFELVAKFAGYGFNKSHAAAYALISYQT 776

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GD 832
             W+K ++PVEF AASM+L++ N +K+  F QDAR+F + +  P VNT   DF V    G 
Sbjct: 777  GWLKANHPVEFFAASMSLDLSNTDKLAVFYQDARKFGVPVRAPDVNTSSADFDVTWEEGT 836

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              + Y+L AI+ VG    +H++E       F  + DF  RVD + +N+R LE L  AGA 
Sbjct: 837  GAVLYALGAIRNVGLEAMKHVVEVRETGGRFADIFDFLERVDPRAVNKRALEGLAKAGAF 896

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R QL +  D +  Y Q V  +RT+   ++F  ++   S +  L+         R
Sbjct: 897  DSIHPNRRQLFEQADTLMAYCQSVAADRTSSQVSLFGADQAGAS-RPRLKSVEPWVGPER 955

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKT 1009
             + E   +GFY SGHPL+  +  LR+  +    E+V      +    +A +V  +Q++ +
Sbjct: 956  LDQELSAVGFYLSGHPLEDMEGALRRKRVTFVAEAVQRAEQGHDAFMMAGVVRRRQERAS 1015

Query: 1010 -RKGSRIGWVTFSEPAKEYEANFFP 1033
             + G +  +VTFS+P  E+E   FP
Sbjct: 1016 AKNGEKFAFVTFSDPTGEFEC-LFP 1039


>gi|329908024|ref|ZP_08274797.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium
            IMCC9480]
 gi|327546808|gb|EGF31739.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium
            IMCC9480]
          Length = 1177

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1045 (38%), Positives = 608/1045 (58%), Gaps = 38/1045 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  SP F HL++HS YS+++G + +++++D  AAD QP++AITD  NLF  ++F + A  
Sbjct: 28   MT-SPQFTHLRLHSEYSIVDGLIRIDDVVDAAAADSQPSLAITDLANLFGMVKFYKAARK 86

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIGC + I   D+                ++LL   A GY +L EL+S+ +L + 
Sbjct: 87   KGIKPIIGCDVWITNDDDRDKP----------SRLLLLAKNAAGYLQLCELISQAWLSNL 136

Query: 125  GKQSVRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             +    I   WL+++    GLI L G   G +  A    +   AE+    + ++F    Y
Sbjct: 137  HRGRAEIRTEWLEKLSPANGLIALAGAHFGDVGIAIENGNLPAAERNAQRWSRIFPGHFY 196

Query: 184  VNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +QR    ++  +  Q+V LA   +LP+VAT+   FL++E++ AH+    ++   +++ 
Sbjct: 197  IEIQRAGQPNQEAQVRQLVALAARLQLPVVATHPIQFLTKEEFIAHEARTCISEGEMLAN 256

Query: 243  KDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              R  R         ++EM  +F+DLP AL+N+ EIA+RC+  LQ+  P LP F   E  
Sbjct: 257  SRRVRRFNDRQCFTTQAEMAGLFADLPAALQNSNEIAKRCNLTLQLGKPRLPDFPTPEGM 316

Query: 302  DIQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
             I     + L  +A +GLE    +L      +    Q Y  RLDFE N I +M F GYFL
Sbjct: 317  TIG----DFLVAEARSGLERRLLQLYPDETKREAERQRYADRLDFETNTIIKMGFPGYFL 372

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVADFIQWAK N +PVGPGRGSGAGS+ AY+L+ITD+DPL ++LLFERFLNP+R+SMPDF
Sbjct: 373  IVADFIQWAKNNGVPVGPGRGSGAGSLVAYSLSITDLDPLEYNLLFERFLNPERVSMPDF 432

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFCQ+ RD VI+YV+++YG E V+QI TFG++ AK A+RDVGR L M Y+  D + KL
Sbjct: 433  DIDFCQEGRDRVIQYVKDRYGKEAVSQIATFGTMAAKGAIRDVGRVLDMGYNFCDGISKL 492

Query: 479  IPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IP  P   V++  AI ++    E +  +  V +LL+++Q++EG+ R+   HA G+VI   
Sbjct: 493  IPFKPGKQVTIADAILEEPLLAERQENEDEVRQLLDLAQQVEGIARNIGMHAGGVVIAPG 552

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GV 594
             L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  ++ ++ +      
Sbjct: 553  KLTDFCPLYTQGGDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAVRYIKRLDPAMA 612

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               L  +P +D  +Y LLT   T+ +FQLES GM+  L+  +PD  EDIIALV+LYRPGP
Sbjct: 613  DFSLEKLPLNDKASYDLLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGP 672

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +  RK+G E+     P  + +L ET G+++YQEQVMQ+AQ++ GYSL  AD+LR
Sbjct: 673  MDLIPDFCRRKHG-ERFDYPDPRTEGILSETYGIMVYQEQVMQMAQVVGGYSLGGADLLR 731

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM + ++ F  GA+K+G+S+  A  IF+L+ KFA YGFNKSHAAAYA+++Y
Sbjct: 732  RAMGKKKAEEMAEHRQIFRDGAAKDGLSEAKADEIFDLMEKFAGYGFNKSHAAAYALLAY 791

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-IQIMPPSVNTPCVDFKVGD- 832
             TA++K H+P  F+AA+++L MD+ EKI+   +D      + ++PP +N     F     
Sbjct: 792  HTAYLKAHHPAAFMAANLSLAMDDTEKIRILVEDVIDVCAMTLLPPDINQSDYRFTPVGE 851

Query: 833  -----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                  +I Y L A+KG G      I+ A A  PF  L DF  RVD +++NRR ++SL+ 
Sbjct: 852  PGKRAKQIRYGLGAVKGSGQGAIEAIVAARASGPFTDLFDFAKRVDKRQVNRRTVDSLIR 911

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGA DCF   R  LL S+    + A+      +    ++F  +      +    K +   
Sbjct: 912  AGAFDCFEVDRAVLLASVALALEAAEQH--EASINQVSLFGGDDSDLDTQPEYLKVAPWT 969

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
               R   E+  LGFY SGH  + Y   +R+           +       +A ++VS + +
Sbjct: 970  DKQRLTEEKTALGFYLSGHLFNSYAEEVRRFARTKLSSLEPSRDPR--MIAGIIVSLRVQ 1027

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G  +  VT  + +   +   +
Sbjct: 1028 MTQRGK-MVIVTLDDSSATVDVTVY 1051


>gi|317124660|ref|YP_004098772.1| DNA polymerase III subunit alpha [Intrasporangium calvum DSM 43043]
 gi|315588748|gb|ADU48045.1| DNA polymerase III, alpha subunit [Intrasporangium calvum DSM 43043]
          Length = 1197

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/1087 (32%), Positives = 544/1087 (50%), Gaps = 68/1087 (6%)

Query: 5    LEKSPS------FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
            +   P+      FVHL VH+ YS+L+GA  + ++  + A    PA+A TD   +F A EF
Sbjct: 1    MSTDPAPRPDQNFVHLHVHTEYSMLDGAARIGDLFTEAARMGMPALATTDHGYVFGAYEF 60

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNL---------KMTNQGKTPFPTVPSIVLLVSTAEGY 109
             +KA   G++PIIG +  I    +                 +       + +L    +G 
Sbjct: 61   WKKAKGTGVKPIIGVEAYITPGTHRADRTKVSWGDGGRDDVSGSGAYTHMTMLAENNDGM 120

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L  + S   L     +  RI    L   G +GLI+ TG  S  I     F     A +
Sbjct: 121  HNLFRMSSIASLDQVYTKWPRIDRELLSSYG-KGLIVTTGCPSSEIQTKLRFGMYDAARE 179

Query: 170  RLLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                 + +FG D ++V L  H    +R  + ++++LA   +LPL+ATN+  +   ED +A
Sbjct: 180  VAGELRDIFGRDNVFVELMDHGLDIERRTQRELIRLARDLDLPLLATNDLHYTRAEDAKA 239

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQ 286
            H  L+ V   + +   +R +   + +    ++ +   + +LPEA +NT+ +A RC     
Sbjct: 240  HAALLCVQSGSTLMDPNRFKFDAEDFYLKSAQEMRHLWRELPEACDNTLLVAERCEVSFT 299

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
                   RF+ +      ++E +    +   GL+ R  +G           R++  FE +
Sbjct: 300  EGE---GRFMPRFPVPEGEDETSWFIKEVETGLQRRFPEGVPDYA------RKQAAFEED 350

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI    +SGYFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD+DP+   L+FER
Sbjct: 351  VIVSKGYSGYFLVVADFINWAKRNGIRVGPGRGSGAGSMCAYAMGITDLDPIPHGLIFER 410

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+RMSMPDFD+DF + RR EVI+YV  KYG ERVAQI+T+G+++AK A++D  R + 
Sbjct: 411  FLNPERMSMPDFDVDFDERRRGEVIKYVTEKYGSERVAQIVTYGTIKAKQAVKDAARVMG 470

Query: 467  MPYSQVDRLCKLIPND-PAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQK 517
             P+S  ++L K +P D     V          +   + S FR     +   + +++ ++ 
Sbjct: 471  HPFSVGEQLTKAMPPDVMGKGVPLAEIYNPEHKRYNEGSEFRALVQTERHFEEVVDAAKG 530

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R    HAAG+++   PL  ++P+ + ++    +TQF+    E  GL+K DFLGL+
Sbjct: 531  LEGLKRQWGVHAAGVIMSSEPLIDVIPIMKRLQDGQVITQFDYPSCEALGLVKMDFLGLR 590

Query: 578  TLTLLQKSLDFLAQRGVKVDLSL---IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
             LT+L  +++ +                  D  TY LL    TLG+FQL+  GMR  L  
Sbjct: 591  NLTILDDAIENIKANRDLDIDLDALSKDMTDRATYDLLGRGDTLGVFQLDGGGMRALLRL 650

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK--------------IVSIHPLIDP 680
            MQPD  EDI A ++LYRPGP+      N       K                 +   ++P
Sbjct: 651  MQPDNFEDISAALALYRPGPMGVNAHTNFALRKNGKQALTPLDPKLEGKLQPEMVAALEP 710

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +L  T G++IYQEQVM+IAQ L+GY+L  AD+LRRAMGKK KE +D +   F  G  + G
Sbjct: 711  ILGTTYGLVIYQEQVMEIAQKLAGYTLGNADLLRRAMGKKKKEVLDAEYVPFSDGMKQKG 770

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             ++     ++E+L  F+DY FNK+H AAY ++SY T ++K +YP E++AA +T   D+ +
Sbjct: 771  FNEASVKALWEVLVPFSDYAFNKAHTAAYGLVSYWTGYLKANYPAEYMAALLTSVRDDKD 830

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD- 859
            K   +  + R   I+++PP VN    +F      I + +AAI+ VG      +++A  + 
Sbjct: 831  KSALYLNECRHMGIKVLPPDVNESVANFAAVGTDIRFGMAAIRNVGVPVVEAVIKAREEK 890

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
              F S +DF S+V +   N+R +ESL+ AGA D  G SR  +++  +        V+K  
Sbjct: 891  GAFASFKDFLSKVPAVVCNKRTIESLIKAGAFDSLGESRRGMVEVHERYVDALVEVKKQE 950

Query: 920  TNKHENIFA--------HEKGTFSDKITLEKFS--VENSSVRFENEQRVLGFYFSGHPLD 969
                +++F            G       L        + +     E+ +LG Y S HPL 
Sbjct: 951  AIGQDSLFGAFDMGDQSGSTGGAGAFDGLPGVPSLEWDKATLLSFEREMLGLYVSDHPLF 1010

Query: 970  VYKPILRKMGIKGYEESV---ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
              + IL+                  G  + +A ++ S Q K+T+KG      T  +    
Sbjct: 1011 GIEHILQSHADTSIASLTGDDPKPDGTPVTVAGLITSLQLKRTKKGDLWAIATVEDLDGA 1070

Query: 1027 YEANFFP 1033
             E  FFP
Sbjct: 1071 IECLFFP 1077


>gi|205355560|ref|ZP_03222331.1| DNA polymerase III alpha chain [Campylobacter jejuni subsp. jejuni
            CG8421]
 gi|205346794|gb|EDZ33426.1| DNA polymerase III alpha chain [Campylobacter jejuni subsp. jejuni
            CG8421]
          Length = 1200

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1058 (36%), Positives = 589/1058 (55%), Gaps = 47/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180
            I    L++  +EGLI  +    G ++                  + A++  L +KK+F D
Sbjct: 118  INKKLLED-HSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV-----HAPILP 293
            ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +           
Sbjct: 237  LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFT 296

Query: 294  RFIEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            R   K+ + I  EE  E                GLE RL           ++Y+QRL+ E
Sbjct: 297  REYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEERLK---FIDESKHEEYKQRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354  INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KL+P +    +       + + +E     P    + E ++ LEGL R+
Sbjct: 474  CDMSIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIDRHPKGLEVWEYARALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583  QKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R  K  +   I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKNIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRVKAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            S+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D  
Sbjct: 833  SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893  KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952

Query: 936  DKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++    K        +   E+ +LG Y SGHPLD +   +  +      +  +      
Sbjct: 953  VQVNFTPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGE 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I     +   +   ++   R G +   +    ++A  F
Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050


>gi|50955139|ref|YP_062427.1| DNA polymerase III subunit alpha [Leifsonia xyli subsp. xyli str.
            CTCB07]
 gi|50951621|gb|AAT89322.1| DNA polymerase III, alpha subunit [Leifsonia xyli subsp. xyli str.
            CTCB07]
          Length = 1171

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1062 (35%), Positives = 570/1062 (53%), Gaps = 51/1062 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL VHS YS+L+GA  +  ++D       PA+A+TD  N+F A +F + A  AGI
Sbjct: 2    ADSFVHLHVHSEYSMLDGAARVKPLIDAAVEQGMPAVAVTDHGNMFGAFDFWRTAIDAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGK---------TPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            +PIIG +  +    +     + +         +       + LL +T EG   L  + S 
Sbjct: 62   KPIIGTEAYLTPGTHRTDKTRIRWGDGGGDDVSGSGAYTHMTLLAATTEGMHNLFRMSSL 121

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              + +      R+    L +   +G+I  TG  SG +         + A+K    F+ +F
Sbjct: 122  ASI-EGYYFKPRMDRELLSQY-AKGIIATTGCPSGEVQTRLRLGQYEEAKKAAAEFRDIF 179

Query: 179  G-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            G +  Y  +  H  G +R   S +++LA    LPLVATN+  +    D ++H  L+ V  
Sbjct: 180  GKENFYAEIMDHGLGIERRIMSDLIRLAKELGLPLVATNDLHYTHAADAKSHAALLCVQS 239

Query: 237  STVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
             + +   +R +    + YLK   +M  +F D P+A +NT+ IA R        A  +PRF
Sbjct: 240  GSTLDDPNRFKFDADEFYLKTSEQMRQLFRDHPDACDNTLTIAERVDVRFDTAANYMPRF 299

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                 +     E+     +   GL  R + G         + R++ D+E+ VI++M F G
Sbjct: 300  PVPAGE----TEQTWFVKEVERGLAERYSNGV------TPEVRKQADYEIGVISQMGFPG 349

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+VADFI W+K N I VGPGRGSGAGS+ AYA+ ITD+DPLR  L+FERFLNPDR+SM
Sbjct: 350  YFLVVADFINWSKDNGIRVGPGRGSGAGSMAAYAMRITDLDPLRHGLIFERFLNPDRVSM 409

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFD+DF   RR EVI+YV +KYG ERVAQI+T+G+++AK AL+D  R L  P+   ++L
Sbjct: 410  PDFDVDFDDRRRGEVIKYVTDKYGEERVAQIVTYGTIKAKQALKDSSRVLGFPFGMGEKL 469

Query: 476  CKLI-PNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
             K + P      +              +    R    +DP    + + +  LE L R   
Sbjct: 470  TKAMPPPVMGKDIPLTGIFDKQHPRYKEALDIRAVVESDPEAKTVFDTALGLENLKRQWG 529

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HAAG+++   PL  ++P+ +  +    VTQF+    E  GLIK DFLGL+ LT++  +L
Sbjct: 530  VHAAGVIMSSDPLIDVIPIMKREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTIINDAL 589

Query: 587  DF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            D   A RG K+ L  +  DD   Y LL+   TLG+FQL+   MR  L  M+PD  EDI A
Sbjct: 590  DNIEANRGEKLVLENLELDDRAAYELLSRGDTLGVFQLDGGPMRSLLRLMKPDNFEDISA 649

Query: 646  LVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQIA 699
            L++LYRPGP+  ++   Y  RKNG+++I  IHP     +  +L  + G+IIYQEQVM IA
Sbjct: 650  LIALYRPGPMGANSHTNYALRKNGQQEITPIHPELAQPLQDILSTSYGLIIYQEQVMAIA 709

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q ++G+SL +AD+LRRAMGKK K E+DKQ E F  G  +NG S      ++E+L  F+DY
Sbjct: 710  QKVAGFSLGQADILRRAMGKKKKSELDKQFEGFSQGMVENGYSVAAVNKLWEILLPFSDY 769

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNK+H+AAY VISY TA++K HYP E++AA +T   D+ +K+  +  + R+  I+++PP
Sbjct: 770  AFNKAHSAAYGVISYWTAYLKAHYPAEYMAALLTSVGDSKDKMALYLNECRRMGIEVLPP 829

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878
             VN   + F      I + + A++ VG      + EA      F+S  DF SRV     N
Sbjct: 830  DVNESSLYFAAVGEDIRFGMGAVRNVGANVVEGVREARESSGRFESFHDFLSRVPVHAAN 889

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK-----HENIFAHEKGT 933
            +R +ESL+ AGA D  GY+R  L++  ++  + A  ++++  N       ++++  ++  
Sbjct: 890  KRTVESLIKAGAFDSLGYTRRALVEVHEDAVESAVKIKRSEANGDVGFDFDSLWGDDEPN 949

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--- 990
             S    + +        +   E+ +LG Y S HPL   +  L K+      + VA+    
Sbjct: 950  RSQH-HIPERPEWVKRDKLAFEREMLGLYVSDHPLAGLELHLAKLASTSIADLVASETVQ 1008

Query: 991  RGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEANF 1031
             G  + +A +V S Q +  +  G++ G +   +   E  A F
Sbjct: 1009 DGETVVIAGLVTSVQHRVAKASGNQYGMIQVEDFGGEMTAMF 1050


>gi|239940546|ref|ZP_04692483.1| DNA polymerase III subunit alpha [Streptomyces roseosporus NRRL
            15998]
 gi|239987031|ref|ZP_04707695.1| DNA polymerase III subunit alpha [Streptomyces roseosporus NRRL
            11379]
 gi|291443979|ref|ZP_06583369.1| DNA polymerase III subunit alpha [Streptomyces roseosporus NRRL
            15998]
 gi|291346926|gb|EFE73830.1| DNA polymerase III subunit alpha [Streptomyces roseosporus NRRL
            15998]
          Length = 1178

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/1066 (30%), Positives = 528/1066 (49%), Gaps = 46/1066 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ +         IA+TD  NL  A +F   A  
Sbjct: 1    MTKPP-FTHLHVHTQYSLLDGAARLKDMFEAANEMGMTHIAMTDHGNLHGAYDFFHSAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            A + PIIG +  +  +                    +         +  S   G   L  
Sbjct: 60   ADVTPIIGIEAYVAPESRKHKRKVQWGQPHQKRDDVSGSGGYTHKTIWASNKTGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EGLI  TG  SG +           A +    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDY 178

Query: 175  KKLFGDR-LYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            K +FG+   ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  KDIFGEGKYFLELMDHGIEIERRVRDGLLEIGKKLNIPPLVTNDSHYTYAHEATAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             +     +S  DR R     Y    +       D  +A +         +  +       
Sbjct: 239  CIQTGKNLSDPDRFRFDGTGYYLK-TTDEMYAVDSSDAWQEGCRNTLLVAQQIDTTGMFE 297

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             + +  + +      E    + +   G+  R   G         D ++++++E+++I +M
Sbjct: 298  AKNLMPKFEIPEGFTEITWFQEEVRRGMARRFPNGV------PDDRQKQVEYEMDIIIQM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+ 
Sbjct: 412  RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471

Query: 472  VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DRL K +P D     +             ++    R     +P V ++++ ++ +EGL 
Sbjct: 472  GDRLTKAMPADVLGKGIDLNGITDPKHPRYSEAGEIRGMYENEPDVKKVIDTAKGVEGLV 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ LT++
Sbjct: 532  RQMGVHAAGVIMSSEPIVDHAPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  +   +G+ +++  +P DD +TY LL    TLG+FQ +   MR  L  MQPD  E
Sbjct: 592  DDAIKMVKSNKGIDLEMLSLPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQPDNFE 651

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695
            DI A+ +LYRPGP+       Y  RKNG+++I  IHP ++  LKE    T G+I+YQEQV
Sbjct: 652  DISAVSALYRPGPMGMNSHTNYAERKNGRQEITPIHPELEEPLKEVLGLTYGLIVYQEQV 711

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+++GYSL EAD+LRR MGKK  EE+ K    F  GA + G S      ++++L  
Sbjct: 712  QKAAQIVAGYSLGEADILRRVMGKKKPEELAKNFVLFEKGAKEKGFSDAAIKALWDVLVP 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+  I+
Sbjct: 772  FAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMRIK 831

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            ++PP+VN    +F   GD+ I + L A++ VG      I+ +      + S  DF  +V+
Sbjct: 832  VLPPNVNESLSNFAAQGDDVILFGLTAVRNVGQNVVDSIIRSRKAKGKYSSFPDFLDKVE 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +   N+R +ESL+ AGA D  G++R  L+   + +      V++       ++F   +  
Sbjct: 892  AVVCNKRTIESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGGGEEE 951

Query: 934  FSDKITLEKFS----VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-- 987
              +                +     E+ +LG Y S HPL   + +L         +    
Sbjct: 952  SGEPGFGLDVEFSDVEWEKAYLLAQEREMLGLYVSDHPLFGLEHVLSDKADASISQLTGG 1011

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                G+ + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1012 DYSDGSVVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1057


>gi|260913108|ref|ZP_05919590.1| DNA-directed DNA polymerase III alpha subunit [Pasteurella dagmatis
            ATCC 43325]
 gi|260632695|gb|EEX50864.1| DNA-directed DNA polymerase III alpha subunit [Pasteurella dagmatis
            ATCC 43325]
          Length = 1143

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/1031 (38%), Positives = 581/1031 (56%), Gaps = 38/1031 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            ++ G   +  ++     +   A+ +TD  N    + F  +A ++GI+PIIG  + +    
Sbjct: 1    MINGIAKVKPLVKACVENNMVAMGLTDFTNFCGLVRFYGEALSSGIKPIIGADVLV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  +          + LL     GYQ +  L+S+ Y     +    I   WL E   
Sbjct: 57   ------KSALCGDERFELTLLAKNNTGYQNITLLLSKAY-ERGYQDLPYIDQEWLIE-HR 108

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV- 200
            EGLI+L+GG +G + +     +    E  +  +++ F +  Y++L R   ++  R   + 
Sbjct: 109  EGLIILSGGHNGDVGKKLLKGNQAEIESAVHFYQEYFPEHFYLSLSRTGRHEEERYVSLA 168

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            ++ A    LP+VATN+ LFL EED+EAH++ +A+  S  +    RP+  T   Y ++  E
Sbjct: 169  IKYAEQKGLPVVATNDVLFLEEEDFEAHEIRVAIHDSYTLDDPKRPKIYTSQQYFRSEQE 228

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +FSD+P ALENT+ IA+RC+  +++           +        E  L  K+  GL
Sbjct: 229  MCELFSDVPSALENTLLIAQRCNVTIRLGEYF-----LPKFPTGDLSTEAFLVKKSKEGL 283

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGP
Sbjct: 284  EERLQVLFPDEKVRQERRSEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 343

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D RD VI +V  
Sbjct: 344  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 403

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A A + 
Sbjct: 404  TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFAAEP 462

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            + +    +D  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 463  QLQVVYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVISPGLITDFSPLYCDSEGKHPVT 522

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYHL 611
             F+   +E AGL+KFDFLGL+TLT+++ +LD +  R        VD+S IP DD E++ L
Sbjct: 523  HFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINTRLAKEGKPLVDISTIPLDDPESFEL 582

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK--- 668
            L    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP+++ +V N         
Sbjct: 583  LKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGNE 642

Query: 669  ----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                      H  + P+L+ T GVI+YQEQVMQIAQ L+GY+L  AD+LRRAMGKK  EE
Sbjct: 643  PVAYPDPEYQHESLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEE 702

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M  Q+E F  GA + G+   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTHYP
Sbjct: 703  MAAQREIFEKGAIQKGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYP 762

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIK 843
             EF+AA MT EMDN +KI     +  +  +++ PP +NT    F V +N  I Y + AIK
Sbjct: 763  AEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVAPPDINTGKHHFSVNENSEIVYGIGAIK 822

Query: 844  GVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      ++ A      F  L D C+RVD KK+NRR  ESL+ +GA D  G  R  L 
Sbjct: 823  GVGEGPIEALISAREQGGIFKDLFDLCARVDLKKINRRTFESLILSGAFDKLGPHRAALS 882

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGF 961
            ++L++  K +    K+      ++F        D +         +  V  + E+  LG 
Sbjct: 883  KNLEDALKASDQHAKDEALGQTDMFGVLTERHEDVEKAYASTPRWSEKVILDGERETLGL 942

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y S HP+  Y   L        ++     RG    ++ +VV+ +   T+KG+R+G  T  
Sbjct: 943  YLSSHPISPYIKELEHYSSTRLKDLAPNYRGQLSTVSGLVVASRVAITKKGNRLGIATLD 1002

Query: 1022 EPAKEYEANFF 1032
            + +   +   F
Sbjct: 1003 DRSGRLDITLF 1013


>gi|119505681|ref|ZP_01627751.1| DNA polymerase III subunit alpha [marine gamma proteobacterium
            HTCC2080]
 gi|119458493|gb|EAW39598.1| DNA polymerase III subunit alpha [marine gamma proteobacterium
            HTCC2080]
          Length = 1153

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1040 (38%), Positives = 586/1040 (56%), Gaps = 38/1040 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +SL++G + +  ++ ++AA   PA+A+TD  N +  ++  + A  AG++ I
Sbjct: 4    FVHLRLHTEFSLVDGLVRIPKLMGEVAAQGMPAVAVTDATNFYGLIKAYKAAQRAGLKLI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  L ++  D+                I LL    +GYQ L  L+S+ +   Q   S R
Sbjct: 64   VGVDLWVEDADDRDRPKP----------ISLLAMNEQGYQNLTLLISKAWREGQYHGSPR 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL +   EG++ L+ G  G   +       + A   L  +   F +R Y+ + R  
Sbjct: 114  IERDWL-DAHAEGVLALSAGCQGEFGQLLNNGHVEEARASLKRWMATFPERFYIEVHRTG 172

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
               +       V+LA   E P+VATN+  FL+  ++EAH+  + + +   +    RPR  
Sbjct: 173  RIGEEDFLHAAVELAAEMECPIVATNDVRFLNTSEFEAHEARVCIGYGRTLDDPRRPREY 232

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   YL+   EM  +FSDLPE+L NTVEIARRCS  + +  P LP F   +   I    E
Sbjct: 233  SEQQYLRTPEEMAELFSDLPESLANTVEIARRCSVTIPLGEPSLPDFPVPDGTTI----E 288

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L   +  GL  RL Q  +       +Y+QRLDFEL VI  M F GYFL+V DFI+W K
Sbjct: 289  DFLSQLSHDGLSRRLEQLQLTDPDTLSEYKQRLDFELGVINEMGFPGYFLVVMDFIRWGK 348

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  IPVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP R+SMPDFD+DFC DRRD
Sbjct: 349  QQGIPVGPGRGSGAGSLVAYVLEITDLDPLAYDLLFERFLNPQRVSMPDFDVDFCMDRRD 408

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV + YG E V+QIITFG++ AKA +RDV R    PY   D++ KLIP +    + 
Sbjct: 409  EVIEYVADTYGREAVSQIITFGTMAAKAVVRDVARVQDKPYGLADKMSKLIPFEVGITLE 468

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+  +    +    D S   + +++ +LEG+ R+   HA G+VI    L+   P+Y D
Sbjct: 469  -KAVEQEEALAQLLKEDGSAQEIWDMAIQLEGVTRNVGKHAGGVVIAPSRLTDFSPLYCD 527

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----RGVKVDLSLIPF 603
                  VTQ++   +E+AGL+KFDFLGL+TLT++  ++  + +     +  K+D+S IP 
Sbjct: 528  EAGGGLVTQYDKNDVEEAGLVKFDFLGLRTLTIIDWAVAMINKARGHEQPEKLDISEIPL 587

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD   + LL +  T  +FQLES GM+  ++ +QPD  EDIIALV+L+RPGP+ + +V N 
Sbjct: 588  DDSRVFTLLKSAETTAVFQLESRGMKDLIKRLQPDSFEDIIALVALFRPGPLQSGMVDNF 647

Query: 664  RKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
                              H  + P+L+ T G+I+YQEQVMQIAQ L+GY+L  AD+LRRA
Sbjct: 648  INRKHGREALAYPDASYQHSSLQPILEPTYGIILYQEQVMQIAQELAGYTLGGADLLRRA 707

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK  EEM KQ+  F  GASK GI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT
Sbjct: 708  MGKKKPEEMAKQRSVFEEGASKKGIDPNLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQT 767

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRI 835
            AW+KTH+P EF+AA M+ E+DN +K+     + +   + +  P VN     F V   N I
Sbjct: 768  AWLKTHFPAEFMAAVMSSELDNTDKLLTLRDECKSMGVPLRLPGVNEGAYLFTVNAANEI 827

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y L AIKG+G     +++ A  AD  F  L D CSR D +K+NRR LE+L+ +GALD F
Sbjct: 828  VYGLGAIKGLGEGPVENLLAARVADGAFKDLFDLCSRTDPRKVNRRALEALIKSGALDGF 887

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK--FSVENSSVRF 952
            G  R   L +LD+  + A+    N      ++F     T       E             
Sbjct: 888  GVERWIQLAALDDALRAAEQTVANDEAGMTDLFGDVAPTADGDPYAEHRGVRPWTLKEIL 947

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              E+  +G + SGHP+  Y+  +RK   +   +       +N  +A ++V  +  KT++G
Sbjct: 948  NGEKESVGSFLSGHPIQEYEAEVRKFAPRRLRDLQP---DSNTTVAGLIVDIRTIKTQRG 1004

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
              +  +   +   + E+  +
Sbjct: 1005 -VMAVLKLDDNTGQIESTVY 1023


>gi|86130781|ref|ZP_01049380.1| DNA polymerase III, alpha subunit [Dokdonia donghaensis MED134]
 gi|85818192|gb|EAQ39352.1| DNA polymerase III, alpha subunit [Dokdonia donghaensis MED134]
          Length = 1463

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1085 (32%), Positives = 555/1085 (51%), Gaps = 77/1085 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--------- 61
            F HL  HS +S+L+   S+ +I+   AA + PA+A+TD  N+  A  F++          
Sbjct: 262  FAHLHNHSQFSILQSTASVQDIVKAAAAQKMPAVAMTDMGNMMGAFHFTKAVKSHNAGVK 321

Query: 62   -----ACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
                 A  AG       ++ IIGC+ ++ +       ++ K+       IV+L     GY
Sbjct: 322  KANAAAVEAGEDPEGVPLKAIIGCEFNVCVD------HKNKSQKDNGYQIVILAKNKNGY 375

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
            Q L ++ S  Y  D      RI  + + +   + LI+LTG   G +           AE+
Sbjct: 376  QNLCKMASIAYT-DGFYYVPRIDRNVIMQY-RDDLIVLTGNLYGEVPSKILNVGENQAEE 433

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             L+ +K+ FGD LY+ L RH   D  R    ++ L+  H +  VA+NN+ ++ + D +AH
Sbjct: 434  ALIWWKEQFGDDLYIELMRHGQEDEDRVMPVLIALSRKHNIKTVASNNTFYIDKSDADAH 493

Query: 229  DVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            DVL+ V     V+                ++Y K+  EM  +F+D+PEA+ N  E+  + 
Sbjct: 494  DVLLCVKDGEKVATPKGRGRGYRYGLPNDEYYFKSGEEMKILFADVPEAILNVQEVVDKI 553

Query: 282  SFILQVHAPILPRFIEKE--------CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
                     +LP F   +         D  ++ E   LR+    G + R  +        
Sbjct: 554  EPYELARDVLLPAFDIPQEFVSPEDAIDGGKRGENAFLRHLVYEGAKKRYGE------EL 607

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
            +++  +RLDFEL+VI +  + GYFLIV DFI+ A+  ++ VGPGRGS AGSV AY L IT
Sbjct: 608  SEEVTERLDFELDVIEKTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSVAAYCLWIT 667

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            +IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V++YV +KYG  +VAQIIT+G++ 
Sbjct: 668  NIDPMKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMQYVIDKYGANQVAQIITYGTMA 727

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIP-------------NDPAHPVSLQAIADDSRFRE 500
            AK+++RD  RAL +     DR+ KLIP              +         +        
Sbjct: 728  AKSSIRDTSRALDLSLGDADRIAKLIPTMSKLRKIFGKTDAELRSSFRSDDLPKVQELIN 787

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
                D    ++L  +++LEG  R+   HA G++I    ++  VP+     SDL VTQF+ 
Sbjct: 788  IETQDNLEGQMLRQARQLEGSVRNTGIHACGVIITPDDITNFVPVALAKDSDLYVTQFDN 847

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLG 619
              +E+AGL+K DFLGLKTLTL++ ++  +  R     D    P DD +TY L     T+G
Sbjct: 848  SVVEEAGLLKMDFLGLKTLTLIKDTVKLVKYRHNVDLDPENFPLDDEKTYELFQRGDTVG 907

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            IFQ ES GM++ ++ ++P   ED+IA+ +LYRPGP++ I  +  RK+G+E+I    P ++
Sbjct: 908  IFQYESPGMQKHMQSLKPTVFEDLIAMNALYRPGPMEYIPSFVRRKHGEEEIEYDLPAME 967

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
              LKET G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK    +DK K +FI  AS  
Sbjct: 968  EYLKETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFIEQASAK 1027

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G        I++    FA Y FNKSH+  YA I+YQTA++K HYP E+LAA ++  M+++
Sbjct: 1028 GHDPEKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYLKAHYPAEYLAAVLSNNMNDI 1087

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASA 858
            +++  F ++A++  ++++ P VN     F V DN  + + + A+KGVGT     I+E   
Sbjct: 1088 KQVTFFMEEAKRMGLEVLGPDVNESFRKFTVNDNGAVRFGMGAVKGVGTGAVATIVENRK 1147

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY--SRMQLLQS-------LDNIQ 909
            D  + S+ DF  RVD +  N++  ESL  AG  D       R Q           L+   
Sbjct: 1148 DGKYKSVFDFARRVDLRAANKKAFESLALAGGFDELDGDTHRAQFFNDNGDGITFLEKAV 1207

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            KY    ++N  +   ++F         +  +       +  + + E+ V+G Y SGHPLD
Sbjct: 1208 KYGARYQENENSSQVSLFGESSEVQIPEPEVPPCEEWGTMEKLKREKEVVGVYISGHPLD 1267

Query: 970  VYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             +K  +                     +    ++   Q + ++ G      T  +    +
Sbjct: 1268 DFKTEMETFCNATVAHFNQMEAFVNRELTFGGVITDVQHRVSKNGKGWAAFTVEDFTDSF 1327

Query: 1028 EANFF 1032
            E   F
Sbjct: 1328 EFRMF 1332


>gi|87118611|ref|ZP_01074510.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121]
 gi|86166245|gb|EAQ67511.1| DNA polymerase III, alpha subunit [Marinomonas sp. MED121]
          Length = 1136

 Score =  726 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1019 (38%), Positives = 583/1019 (57%), Gaps = 31/1019 (3%)

Query: 32   ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKT 91
            +L   A    PA+A+TD NNL   + F + A  +GI+PI G  + I+    L+  +    
Sbjct: 4    LLGATAGLNMPAVAMTDENNLCGFVRFYKGAMGSGIKPICGADVVIEADGELEENH---- 59

Query: 92   PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS 151
                   + LL  T +GY+ +IE++S+ Y L Q +    +  +W+ E   E +I+++G  
Sbjct: 60   ------RLTLLAMTNKGYKNIIEVISKGYQLGQFEGRPIVQRAWV-EAHQEDVILISGAQ 112

Query: 152  SGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELP 210
             G + +        +A+++L  + ++F +R YV LQR  R  +      VV LA     P
Sbjct: 113  YGDVGQYLALQKPTLAKQKLERWMQIFPNRFYVELQRTSRIGEEDYIHAVVPLATELACP 172

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPE 269
            +VATN+  FL  ED+E+H+  + +     +    R  R + + YLK+  EM ++F D+PE
Sbjct: 173  VVATNDVRFLKREDFESHEARVCIHDGVTLDDPRRKKRYSEEQYLKSADEMQALFDDIPE 232

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            ALENTVEIA+RC+  + +    LP F   E   +                +  + +    
Sbjct: 233  ALENTVEIAKRCNVDVLLGKYFLPDFPVPEGMTMDVFFSELSFKGLEERFDFLVKKYGDR 292

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                 Q+Y  RLDFELN+I +M F GYFLIV DFIQWAK N+IPVGPGRGSGAGS+ AYA
Sbjct: 293  IADKKQEYWDRLDFELNIINQMGFPGYFLIVMDFIQWAKDNDIPVGPGRGSGAGSLVAYA 352

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L ITD+DPL + LLFERFLNP+R+SMPDFDIDFC D RD+VI YV   YG + V+QIITF
Sbjct: 353  LKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDNRDKVIDYVAQTYGRDAVSQIITF 412

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G++ AKA +RDV R    PYS  D+L KLIP +    +  +A+ ++   +E    D    
Sbjct: 413  GAMAAKAVVRDVARVQGKPYSLGDKLSKLIPFEIGMTL-NKALEEEPMLKEFIENDEEAG 471

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
             ++E++  LEG+ R+   HA G+VI    L+   P+Y +      VTQ++   +E+AGL+
Sbjct: 472  DVMEMALSLEGVVRNFGKHAGGVVIAPTKLTDFSPLYCEEDGSGLVTQYDKNDVEEAGLV 531

Query: 570  KFDFLGLKTLTLLQKSLDFL-----AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            KFDFLGLKTLT++  ++  +      +    +D++LI  +D  TY +L    T  +FQLE
Sbjct: 532  KFDFLGLKTLTVVDWAMKNINDIQAREGKPALDITLIDLEDKPTYDMLQRAETTAVFQLE 591

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK-------EKIVSIHPL 677
            S GM++ ++ + P   EDI+ALV+LYRPGP+ + +V +                   H  
Sbjct: 592  SRGMKELIKKLLPSRFEDIVALVALYRPGPLGSGMVDDFINRKHGRSELAFPHPDYQHDD 651

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            + P+L+ T G+I+YQEQVMQIAQ+L+ +SL  AD+LRRAMGKK  E M +Q+  F+ GA 
Sbjct: 652  LIPVLEPTYGIILYQEQVMQIAQVLARFSLGGADLLRRAMGKKKPEVMAEQRLLFMEGAG 711

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            K  IS+ ++ NIF+L+ KFA YGFNKSH+AAYA++SYQTAW+K HYP  F+AA ++ +M 
Sbjct: 712  KYDISEELSGNIFDLMEKFAGYGFNKSHSAAYALVSYQTAWLKHHYPAPFMAAVLSADMQ 771

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA 856
            N +KI  F ++ R   +Q+  P+VN     F V     I Y L AIKGVG      I +A
Sbjct: 772  NTDKIVIFIEECRAMKLQLELPNVNESVYKFTVNRAGAIVYGLGAIKGVGEGPIEAITQA 831

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
              + PF+ + DFC R+  KK+N+RV+E+L+ +GALD  G +R  L  S+D   K A  + 
Sbjct: 832  REEGPFEHIFDFCKRIG-KKVNKRVMEALIRSGALDQIGPNRATLFASIDEALKRADRIA 890

Query: 917  KNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
            K+      ++F    E+ T      +       S  R + E+  LG Y +GHP+D Y+  
Sbjct: 891  KDEDAGMMDLFGVAVEESTEGAYDEIGIQHEWPSRQRLDGEKDTLGLYVTGHPIDDYEKE 950

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +R+       +       + I +A ++V  +  K++KG  I +VT  + +   E   FP
Sbjct: 951  IRRFARSRIVDLQPKRGDSQI-MAGLIVEMRITKSKKGGNIAFVTLDDRSARIEVTVFP 1008


>gi|153951559|ref|YP_001398338.1| DNA polymerase III subunit alpha [Campylobacter jejuni subsp. doylei
            269.97]
 gi|152939005|gb|ABS43746.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp. doylei
            269.97]
          Length = 1200

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1058 (35%), Positives = 584/1058 (55%), Gaps = 47/1058 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F A++F Q   A G++PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELALTLKKQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64   IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180
            I    L++   EGLI  +    G ++                  + A++  L +KK+F D
Sbjct: 118  INKKLLEDY-NEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV--HAPILPRFI 296
            ++  DR R +  + Y+K+  +M  +F D+PEA+ENT E+A++C+  L +    P   +F 
Sbjct: 237  LNDPDRMRHSVHEFYVKSPEQMSELFVDIPEAIENTQEVAQKCNLELNLGNPTPPNFKFT 296

Query: 297  EKECDDIQKEEENE------------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
             +   D       E                   GLE RL           ++Y+QRL+ E
Sbjct: 297  REYAKDHNITLPEETKEFSFDNDDIVFEELCKKGLEERLK---FIDESKHEEYKQRLEVE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354  INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
              M     D L KL+P +    +       + + +E     P    + E ++ LEGL R+
Sbjct: 474  CDMSIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533  AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583  QKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R  K  +   I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653  DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A ++++L+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWDLIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E + V+KI  +  + ++ NI+++PP
Sbjct: 773  GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENKVDKIAVYIDEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            S+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D  
Sbjct: 833  SINKAIREFSALEQDGKDAIIYGLGAIKSVGIAPVENLLEARQDGEFKDINDFLGKIDPA 892

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            K+NRR LE+L+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893  KINRRTLENLIKAGAFDEFGFTRKALFDNIENLTEASRKIAEVRKNAASSLFGEEELTSG 952

Query: 936  DKIT-LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             ++  + K        +   E+ +LG Y SGHPLD +   +  +      +         
Sbjct: 953  VQVNFIPKNEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFEGLKNNGE 1012

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            I     +   +   ++   R G +   +    ++A  F
Sbjct: 1013 ILSIGKIEDFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050


>gi|227484665|ref|ZP_03914981.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
 gi|227237385|gb|EEI87400.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
          Length = 1148

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/1063 (33%), Positives = 573/1063 (53%), Gaps = 62/1063 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F HL +H+ YSLL+G   ++ +LD+       ++AITD   ++  +EF ++A  
Sbjct: 1    MTTK--FTHLHLHTEYSLLDGFTRIDELLDRCKELGMDSVAITDHGQMYGVIEFYKQAQK 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIGC++ +  +D+       +        ++LL     GY+ L+++VS  Y ++ 
Sbjct: 59   RGIKPIIGCEVYVSERDHKIKDPTNR----RYYHLILLAENNTGYKNLVKIVSEAY-VNG 113

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 R+   ++ +  TEGLI L+   +G +++         AE+  L ++K FG    +
Sbjct: 114  FYYKPRVSFDFI-KNHTEGLIALSACLNGEVNQRILEGDMGGAEETALKYEKAFGKGSFF 172

Query: 184  VNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +Q H   ++ + +Q ++ L     + +VATN+  ++++ED    DVL+ +    ++  
Sbjct: 173  LEVQDHGMAEQKKVNQGIKYLHKKLGIEMVATNDVHYINKEDSYYQDVLLCIQTGALIKD 232

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            ++R R+ T + YLK+   M +IF D   A+ENT +IA RC   ++ H P LP + +    
Sbjct: 233  ENRMRMPTREFYLKDADTMATIFKDYERAIENTRKIADRCQVEIKFHQPHLPYYTK---V 289

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                   + L+     GL  +  Q          +  +R   E++VI  M +  YFLIV 
Sbjct: 290  PEGLTNLDYLKLLVNDGLAQKYDQ-------VTDEIVKRAKMEIDVINSMGYVDYFLIVW 342

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DF+ +A+KN+I VGPGRGS AGS+ +YAL IT IDPL+++L+FERFLNP+R+SMPD DID
Sbjct: 343  DFVNYARKNDIAVGPGRGSAAGSLVSYALDITQIDPLKYNLIFERFLNPERVSMPDIDID 402

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F    RD+V+ YV + YG + V+QI+TFG +QA+ A+RDVGR L + Y +VD + K IP 
Sbjct: 403  FDYVLRDKVVEYVNDLYGRDHVSQIVTFGRMQARNAIRDVGRVLDIAYGKVDTIAKQIPA 462

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +  +A+ +   FR +   D    RL++ ++KLE L RH S HAAG+VI   PL+ 
Sbjct: 463  TIGMTID-KALVESDAFRASYEKDAEGKRLIDTAKKLEALPRHTSIHAAGVVISKDPLTD 521

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSL 600
            ++P+     +D  V+QF+M  IE+ GL+K DFLGL+ LT+++ ++  + +      D+  
Sbjct: 522  IIPLALS--NDQVVSQFDMTEIEELGLLKMDFLGLRNLTVIKDTIKDIKKNYGVDLDIRK 579

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            I  +D           T+G+FQ ES+GMR  L+ ++P   +D+IA  SL+RPGP+D I  
Sbjct: 580  IDVNDVNVIKQFNQAKTIGLFQFESAGMRAFLKNLKPTVFDDLIAANSLFRPGPMDEIPK 639

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y + KN  + +  +   + P+L  T G+I+YQEQVMQI Q L+GYSL EAD LRRAM KK
Sbjct: 640  YIHNKNNPDDVTFLDEKLKPILGVTYGIIVYQEQVMQIVQQLAGYSLGEADNLRRAMSKK 699

Query: 721  IKEEMDKQKERF------------ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
                M++ ++ F            I GA +NG+ + +A  I++ +  FA Y FNKSH+AA
Sbjct: 700  KMAVMEENRDVFINGKVGEDGKVIIPGAVRNGVDRQVANTIYDEMISFAKYAFNKSHSAA 759

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y++++ QTA++K +YP E++A  ++  MD   K+  +  + ++  I+++ P +N     F
Sbjct: 760  YSLVAVQTAYLKHYYPEEYMANLISSVMDQSGKLYSYVSETKRLGIEVLAPDINKSYGSF 819

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV---DSKKLNRRVLES 884
            KV D +I + L+ IK VG      I++A      F + ++F  RV   D + LN++ +ES
Sbjct: 820  KVADKKIIFGLSGIKNVGLNLIDSIVKARDEGGAFTNFKNFLERVEDYDPRALNKKGIES 879

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+ AGA D  GY+R  L+   +          K       N+           I +    
Sbjct: 880  LIKAGAFDSLGYTRSSLMAIFEKAINTVHDNNKINVTGQINLLDMASAKEDTDIDMPNID 939

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDV--------------YKPILRKMGIKGYEESVATI 990
                 V+ + E+ VLGFY S HPL                Y+  L +  +          
Sbjct: 940  EYPKKVKLKLEKEVLGFYISEHPLSERSLALSNIVNFTTNYREELGENRLASL------- 992

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G  + +A ++ +K++  T+K   + + +  +     E   FP
Sbjct: 993  DGKFVTMAGIINNKKELTTKKRDLMAFASLEDMYGNIEMVIFP 1035


>gi|88862980|gb|ABD53857.1| DNA polymerase III, alpha subunit [Jannaschia sp. CCS1]
          Length = 1155

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 493/1046 (47%), Positives = 660/1046 (63%), Gaps = 59/1046 (5%)

Query: 28   SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTN 87
             +  +   +A    PA+A+TDTNN+F ALEFS+ A  AG+QPIIGCQ+D++ +    +  
Sbjct: 2    KVKKMPGIVADAGMPAVAVTDTNNMFCALEFSEMAKKAGVQPIIGCQIDLEYE----VIA 57

Query: 88   QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIML 147
             G+ P      IVLL     GY+ L++L S +YL   G  S  + LS L E   EGLI L
Sbjct: 58   PGEKPRAPAA-IVLLAQNRAGYENLMKLNSALYLRGDGT-SPHVTLSELAE-HAEGLICL 114

Query: 148  TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY------DRYRESQVV 201
            +GG  GP+ R         AE  L T   ++ DRLYV LQRH G       ++  E   V
Sbjct: 115  SGGPDGPVGRHLRAAQMPKAESLLKTLAAIYPDRLYVELQRHPGEGGLPEAEKLTERGHV 174

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEM 260
            +LAY   LPLVATN+  F   E YEAHD ++ VA    V Q + R R+TP HY K+  EM
Sbjct: 175  ELAYALGLPLVATNDVYFPKSEIYEAHDAMLCVAQGAYVDQSEPRRRLTPQHYFKSADEM 234

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
             ++F+DLPEALENT+EIA+RC+F  +          +        +E  ELR  A  GL+
Sbjct: 235  AALFADLPEALENTIEIAQRCAFRAE--------MHDPILPKFADDEVAELRRMANEGLK 286

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
             RL    I      +DY+ RLDFEL +I  M F GYFLIVADFIQW+K   IPVGPGRGS
Sbjct: 287  ERLR--VIPHAASVEDYQARLDFELEIIEGMGFPGYFLIVADFIQWSKDQEIPVGPGRGS 344

Query: 381  GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
            GAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDIDFC DRR+EVIRYVQ KYG 
Sbjct: 345  GAGSLVAYALTITDLDPLRYSLLFERFLNPERISMPDFDIDFCMDRREEVIRYVQEKYGR 404

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA-IADDSRFR 499
            +RV QIITFG+L +KAA+RDVGR LQMP+ QVDRL K+IP +   PVS+   I D+ RF 
Sbjct: 405  DRVGQIITFGALLSKAAVRDVGRVLQMPFGQVDRLSKMIPVEGVKPVSIAQAIKDEPRFI 464

Query: 500  EARLADPSV---------DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            E                  RL++ ++K+EGL R+ASTHAAG+VIGDRPL +LVP+YRD R
Sbjct: 465  EEMRESEQDKRDGRVNPTRRLMDYAEKIEGLLRNASTHAAGVVIGDRPLDELVPLYRDPR 524

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD------------- 597
            SD+P TQFNMKW+E AGL+KFDFLGLKTLT++Q ++D +   G ++              
Sbjct: 525  SDMPATQFNMKWVEPAGLVKFDFLGLKTLTVVQNAIDLIHTSGRQLHEGPDGTTLYEPPE 584

Query: 598  -----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                 ++LIP DD  +Y L  +  T+ +FQ+ESSGM  AL  M+PDCIEDIIALV+LYRP
Sbjct: 585  GTENQINLIPLDDKASYDLYASAKTVAVFQVESSGMMDALRRMKPDCIEDIIALVALYRP 644

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP++NI  +   KNG  +   +HP +D +L ETQG+I+YQEQVMQIAQ ++GYSL  AD+
Sbjct: 645  GPMENIPKFCEVKNGLSERERLHPTVDHLLDETQGIIVYQEQVMQIAQEMAGYSLGGADM 704

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKKI+E MD ++ +F++GA +NG+ +  A+  + LL KFA+YGFNKSHAAAYAV+
Sbjct: 705  LRRAMGKKIQEAMDAERPKFLAGAKENGVDEAKALETWALLDKFANYGFNKSHAAAYAVV 764

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SYQTAW+K ++PVEF+AA M  ++   +K+  + Q+  +  I+ + P VN     F V D
Sbjct: 765  SYQTAWLKANHPVEFMAAVMNCDIHLTDKLAVYKQEVDRMGIETLAPCVNRSAATFTVED 824

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASAD----KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             ++ Y+L A+K VG    + I+E        KP+ +L D   RVD K++ +R LE LV A
Sbjct: 825  GKVLYALGALKNVGVEAMKMIVEGRQTDQGVKPYATLFDLARRVDLKRVGKRSLEMLVRA 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GA D    +R  +L SLD +  Y+  V    ++   ++F    G    +  L        
Sbjct: 885  GAFDELDRNRRHVLDSLDGLTAYSAAVHDQASSNQVSLFGDA-GDDLPEPRLSSAPDWLP 943

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQ 1006
            + R   E + +GFYFSGHPLD Y+P L++ G+    E  A ++      ++A  V  KQ+
Sbjct: 944  NERLAAEHQAVGFYFSGHPLDDYQPALKRRGVMTLAEVEARVQQGPFVAKMAGAVSVKQE 1003

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +K+++G+R  +V+ S+P   YE   F
Sbjct: 1004 RKSQRGNRFAFVSLSDPTGLYEITIF 1029


>gi|34496366|ref|NP_900581.1| DNA-directed DNA polymerase III subunit alpha [Chromobacterium
            violaceum ATCC 12472]
 gi|34102219|gb|AAQ58585.1| DNA-directed DNA polymerase III, alpha subunit [Chromobacterium
            violaceum ATCC 12472]
          Length = 1144

 Score =  725 bits (1872), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1037 (36%), Positives = 577/1037 (55%), Gaps = 31/1037 (2%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P FVHL++HS +S+ +G + L++ + + A +Q PA+ ++D  NLF  ++F +     G
Sbjct: 2    NAPRFVHLRLHSEFSITDGIVRLDDAVKRAAKEQMPALGVSDLMNLFGMVKFYKSCRNKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+   + ++ +++                ++L     EGY+RL EL++  +  +Q +
Sbjct: 62   IKPIVSADIWLENEEDRDKP----------YRLMLTAKNREGYRRLCELLTEAFSHNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                I  +WL       L+ L+G   G +  A        A +R   ++ LF    Y+ +
Sbjct: 112  GRAEIKRAWLASGDNSNLLCLSGAHLGDVGIALSMGQRDEARRRAEYWESLFPGAFYLEI 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR             + LA    LP+VAT+   F+ +ED++AH+  + +A    +  K R
Sbjct: 172  QRVDSAQVENVVQATLWLAGETGLPVVATHPIQFMEKEDFKAHEARVCIAEGYTLGDKRR 231

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            PR  +   Y  +  +MV  F+D+PEAL NTVEIA+RC+  + +    LP F   +   + 
Sbjct: 232  PRSFSECQYFLSAEQMVERFADIPEALANTVEIAKRCNISVVLGKNYLPLFPTPDGMSL- 290

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L ++A  GLE RL Q    +    +   DY  RL FE + I +M F GYFLIVA
Sbjct: 291  ---DDFLVHEAKRGLEERLKQLYPDEAERQEKRPDYDARLKFECDTIIQMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFIQW K N  PVGPGRGSGAGS+ AY+L+ITD+DPL+++LLFERFLNP+R+SMPDFD+D
Sbjct: 348  DFIQWGKANGCPVGPGRGSGAGSLVAYSLSITDLDPLKYALLFERFLNPERVSMPDFDVD 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ+ R  VI Y + KYG E V+QI TFG++ +K+ +RDVGR L +P+   DRL KLIP 
Sbjct: 408  FCQENRWRVIEYTRRKYGEEAVSQIATFGTMSSKSVIRDVGRVLDLPFGLCDRLSKLIPL 467

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +   P+SL+            +       L+E++  LE L R    HA G++I    L+ 
Sbjct: 468  EANKPLSLEKAMQVEPQIGEIIESEGAQELIELAMTLEDLTRGIGMHAGGVLIAPGRLTD 527

Query: 542  LVPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
              P+Y        PV+QF+   +E+ GL+KFDFLGL+ LT+++ +  ++    G  VD++
Sbjct: 528  FCPLYIASGDGASPVSQFDKDDVEQIGLVKFDFLGLRNLTIIELAQKYIKDLTGEDVDVA 587

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +P DD   Y +  T  T  +FQ ES+GM++ L   +P   E+IIA V+LYRPGP+D I 
Sbjct: 588  HLPLDDKPAYKVFATANTTAVFQFESTGMKKMLVEAKPSKFEEIIAFVALYRPGPMDLIP 647

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R +G  K   +HPL++P+L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGK
Sbjct: 648  DFIQRMHG-AKFEYLHPLLEPVLAPTYGIMVYQEQVMQSAQVIGGYSLGGADLLRRAMGK 706

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  EEM  Q+  F+ GA+K  I +  A  IF+ + KFA YGFNKSHAAAYA+++Y TAW+
Sbjct: 707  KKVEEMVAQRAMFVQGAAKQDIPEAKANEIFDYMEKFAGYGFNKSHAAAYALVAYHTAWL 766

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDAR--QFNIQIMPPSVNTPCVDFK-VGDNRIY 836
            K H+   ++AA+M+ E+DN +++K F  D +  +  +  +PP VN     F  V    I 
Sbjct: 767  KAHHCAAYMAATMSTELDNTDQLKVFYDDCQDPKNGVTFLPPDVNHGFYRFVPVSRKEIR 826

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y+L AIKG G +   HI+E   A  PF  L DFC R D K +N+RV+E+L+ AGA D   
Sbjct: 827  YALGAIKGTGESAVNHIVEVREAGGPFTDLFDFCKRTDKKLVNKRVIEALIRAGAFDAIE 886

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R  L  ++    + A+    N       +F       +  + +      + +V+   E
Sbjct: 887  PNRALLFANVGLAMEAAEQAHAN--ANQGGLFDMFGDDVAPAVEMAATRPWSDAVKLAEE 944

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  +GFY S HP   Y+  +R            T R     LA  V   + K   +G  +
Sbjct: 945  KLAIGFYLSDHPFSAYEKEVRGFIKTTLSRL--TPRKEPQLLAGFVTGIRVKVGNRGK-M 1001

Query: 1016 GWVTFSEPAKEYEANFF 1032
             +V   +   + E + F
Sbjct: 1002 AFVQLDDGTAKLEVSLF 1018


>gi|282862139|ref|ZP_06271202.1| DNA polymerase III, alpha subunit [Streptomyces sp. ACTE]
 gi|282563164|gb|EFB68703.1| DNA polymerase III, alpha subunit [Streptomyces sp. ACTE]
          Length = 1179

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/1068 (31%), Positives = 532/1068 (49%), Gaps = 49/1068 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ +         IA+TD  NL  A +F   A  
Sbjct: 1    MSKPP-FTHLHVHTQYSLLDGAARLKDMFEAANTMGMSHIAMTDHGNLHGAYDFFHSAQK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +  + + G   L +
Sbjct: 60   AGVTPIIGIEAYVAPESRKHKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFK 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EGLI  TG  SG +           A +    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDY 178

Query: 175  KKLFGD-RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            K +FG+ R ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  KDIFGEGRYFLELMDHGIEIERRVRDGLLEIGRKLGIPPLVTNDSHYTYAHEATAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             +     +S  DR R     Y    +       D  +A +         +  +       
Sbjct: 239  CIQTGKNLSDPDRFRFDGTGYYLK-TTDEMYAVDSSDAWQEGCANTLLVAQQIDTTGMFE 297

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             R +  + +      E    + +   G+  R   G        +D +++ ++E+++I +M
Sbjct: 298  KRDLMPKFEIPDGFTEVTWFQEEVRVGMARRYPGGV------PEDRQKQAEYEMDIIIQM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPITHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+ 
Sbjct: 412  RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471

Query: 472  VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DRL K +P D     +              +    R     +P V ++++ ++ +EGL 
Sbjct: 472  GDRLTKAMPADVLGKGIDLSGITDPKHPRYGEAGEIRGMYENEPDVKKVIDTAKGVEGLV 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ LT++
Sbjct: 532  RQMGVHAAGVIMSSEPIVDHAPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  +   +G+ +++  +P DD +TY LL    TLG+FQ +   MR  L  MQPD  E
Sbjct: 592  DDAIKMVKANKGIDLEMLALPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQPDNFE 651

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695
            DI A+ +LYRPGP+       Y  RKNG+++I  IHP ++  LKE    T G+I+YQEQV
Sbjct: 652  DISAVSALYRPGPMGMNSHTNYAERKNGRQEITPIHPELEEPLKETLGLTYGLIVYQEQV 711

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+++GYSL EAD+LRR MGKK  EE+ K    F +GA KNG S      ++++L  
Sbjct: 712  QKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFVLFQAGAKKNGYSDAAIQALWDVLVP 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+  I+
Sbjct: 772  FAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMGIK 831

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            ++PP+VN    +F   GD+ I + L A++ VG      I+        + +  DF  +V+
Sbjct: 832  VLPPNVNESESNFAAQGDDVILFGLTAVRNVGQNVVDSIIRCRKAKGKYSTFPDFLDKVE 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +   N+R +ESL+ AGA D  G++R  L+   + +      V++       ++F      
Sbjct: 892  AVVCNKRTVESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGGMGEE 951

Query: 934  FSDKI------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
             SD+                 S     E+ +LG Y S HPL   + +L         +  
Sbjct: 952  ESDEPGFGLDVEFSDI-EWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKSDASISQLT 1010

Query: 988  --ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1011 GGEHADGAIVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|311745732|ref|ZP_07719517.1| DNA polymerase III, alpha subunit [Algoriphagus sp. PR1]
 gi|126575175|gb|EAZ79525.1| DNA polymerase III, alpha subunit [Algoriphagus sp. PR1]
          Length = 1428

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1073 (32%), Positives = 548/1073 (51%), Gaps = 66/1073 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VHS YS+L+    +  ++ K      PAIA+TD  N+ +A  F ++A +  I+PI
Sbjct: 244  FTHLHVHSQYSVLQATSEIPAMVAKAKEMGMPAIAMTDHGNMMAAFHFVKEALSNDIKPI 303

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+ ++          + K+        VL+     GY  L +L S   + +      R
Sbjct: 304  LGCEFNLC------RDRKNKSSKDDGYQTVLIAKNKAGYHNLAKLASYANI-EGFYYLPR 356

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    LQ+     LI  TGG  G I           AE+  L +K+ FG+  YV L RH 
Sbjct: 357  IDKEVLQQY-KGDLIATTGGLWGEIPFLILNVGETQAEEAFLWWKEQFGEDFYVELCRHG 415

Query: 191  GYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP--- 246
              +       +++ A  H++   A NNS + ++ D +AHD+L+ V    +V +  +    
Sbjct: 416  IPEEEKVNEVLLEFAKKHDVKYFAANNSYYTNKADAKAHDILLCVKDGELVEKPKKYIGK 475

Query: 247  --------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI--------LQVHAP 290
                        ++Y+K+  EM  +F+DLPEA+E T EI  +                 P
Sbjct: 476  RGREFRYGFPNDEYYIKSPEEMKKLFADLPEAIECTAEITDKIEPYKLAREVLLPAFDIP 535

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
               +  E E D  ++ E   LR+    G +               +  +RLDFEL  I  
Sbjct: 536  DEFKHPEDEVDGGKRGENAFLRHLTYEGAKK-------RYEEITPEIEERLDFELKTIEN 588

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              + GYFLIV DFI  A+K  + VGPGRGS AGS  AY   IT+IDP+ ++LLFERFLNP
Sbjct: 589  TGYPGYFLIVQDFIVEARKLGVSVGPGRGSAAGSAVAYCTGITNIDPIAYNLLFERFLNP 648

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            DR+S+PD DIDF    R +VI YV  KYG  +VAQIIT+G++ AK+A+RD  R L +P +
Sbjct: 649  DRVSLPDIDIDFDDHGRQKVIDYVIKKYGANQVAQIITYGTMAAKSAIRDTARVLNLPLA 708

Query: 471  QVDRLCKLIPNDPAHPVSL----------------QAIADDSRFREARLADPSVDRLLEI 514
               RL  L+P+     +                  + IA                + +  
Sbjct: 709  DAGRLANLVPDIKLKALFGLAGNRAALSDKLKGQGELIAKADELIRISKGQDESAKTINQ 768

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            +  LEG  R+   HA G++I    ++  VP+     SD+  TQF+   +E AGL+K DFL
Sbjct: 769  ATMLEGSVRNLGIHACGVIITPDDITNFVPVALAKDSDMVCTQFDNSVVESAGLLKMDFL 828

Query: 575  GLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GLKTLTL++ ++  + +R     D    P DD +TY L     T+GIFQ ES+GM++ + 
Sbjct: 829  GLKTLTLIKDAVKIVKERHGIELDPEKFPIDDVKTYELFQRGETVGIFQYESAGMQKYMR 888

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
             ++P    D+IA+ +LYRPGP++ I  +  RK+G+E I      ++  L ET G+ +YQE
Sbjct: 889  ELKPTVFADLIAMNALYRPGPLEYIPSFIRRKHGEEPITYDLDDMEEYLNETYGITVYQE 948

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVM ++Q L+G++  EADVLR+AMGKK+K+ +DK K +F++ A++ G  K+    I++  
Sbjct: 949  QVMLLSQKLAGFTKGEADVLRKAMGKKLKDVLDKMKPKFVNQAAEKGHDKSKLEKIWKDW 1008

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNKSH+  YA ++YQTA++K HYP E+LA+ ++  M+++ ++  F ++ ++  
Sbjct: 1009 EAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEYLASVLSNNMNDISQVTFFMEECKRSG 1068

Query: 814  IQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR 871
            I ++ P VN     F V  +  I + +AAIKG G+     I++    + PF +L DF  R
Sbjct: 1069 IPVLGPDVNESKNGFTVNAEGEIRFGMAAIKGAGSAAVDEIIKEREENGPFKNLFDFAKR 1128

Query: 872  VDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQWVEKNRTNKH 923
            V+SK LN++ +E+L  AG  DCF  + R Q L++       ++   KYAQ V++   +  
Sbjct: 1129 VNSKALNKKTMEALAMAGGFDCFPEHHRRQYLEAADGDLTLIEKATKYAQKVQQEEESAQ 1188

Query: 924  ENIFAHEKGTFS-DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
             ++F    G+      ++      +   +   E+ V+G Y SGHPLD Y+  +       
Sbjct: 1189 VSLFGGSSGSMDIPLPSVAPMEPFSQLQQLNIEKEVVGLYISGHPLDQYRLEIESFTNAN 1248

Query: 983  YEESVAT---IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +            I+LA  V S   + T+ G   G +T  +    +    F
Sbjct: 1249 LPDLNDIDSFKNKKEIKLAGSVSSFAHRTTKNGKPFGTLTMEDYHGGFTFFLF 1301


>gi|260910104|ref|ZP_05916781.1| DNA-directed DNA polymerase III alpha subunit [Prevotella sp. oral
            taxon 472 str. F0295]
 gi|260635608|gb|EEX53621.1| DNA-directed DNA polymerase III alpha subunit [Prevotella sp. oral
            taxon 472 str. F0295]
          Length = 1235

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1110 (33%), Positives = 571/1110 (51%), Gaps = 91/1110 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66
             FVHL VH+ YS+L+G  S+  ++DK  A+    +A+TD  N+F   EF           
Sbjct: 3    DFVHLHVHTYYSILDGQSSIQRLVDKAIANGMGGMALTDHGNMFGTKEFYNYCKKVNAKR 62

Query: 67   -------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                    +PIIGC++ +          +      +   +++L     GY+ LI+LVSR 
Sbjct: 63   KEEGLPAFKPIIGCEMYVARHRKTDKVKENGDM--SGYHLIVLAKNYTGYKNLIKLVSRA 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            + +D      R     L+    EGLI+ +   +G + R    N  + A +    + ++FG
Sbjct: 121  W-VDGYYMRPRTDREDLETYH-EGLIVCSACIAGEVPRKILRNDIEGAREAAQWYHRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     ++++A    + +V TN++ F+ +E+ E
Sbjct: 179  DDYYLELQRHEVKDPYIRANREAYPLQQRANKVMLEMAEEMGINVVCTNDAHFVDQENAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++    +    R   +   + K R EM  +F DLP+A+ NTVEI  +      
Sbjct: 239  AHDHLLCLSTGKDLDDPTRMLYSKQEWFKTREEMNEVFGDLPQAMRNTVEILNKVETYSI 298

Query: 287  VHAPILPRFIEKECDDIQK--------------------------EEENELRNKAVAGLE 320
             H+PI+P F   E    ++                           EE E + K + G E
Sbjct: 299  DHSPIMPFFPIPEDFGTEEQWRERISEKELYDEFTSDENGQNQLPPEEGEDKIKKLGGYE 358

Query: 321  VRLAQGAIAK---------------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    A                   +++ R+R++FEL+++  M F GYFLIV DFI 
Sbjct: 359  KLYRIKFEADYLAKLAYDGAKRLYGEPLSEEVRERVNFELHIMKTMGFPGYFLIVQDFIN 418

Query: 366  WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             A+   ++ VGPGRGS AGSV AY L IT IDP+++ LLFERFLNPDR+S+PD D DF  
Sbjct: 419  TAQNELDVMVGPGRGSAAGSVVAYCLGITKIDPIKYDLLFERFLNPDRISLPDIDTDFDD 478

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D R  V+ +V++KYGH++VA IIT+G++  K +++DVGR  ++P   V+ LCKLIP+   
Sbjct: 479  DGRGRVLEWVEDKYGHDKVAHIITYGTMATKNSIKDVGRVEKVPLKIVNDLCKLIPDKLP 538

Query: 485  HPVSL---QAIADDSRFREARLA-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              + +    AI      REA  + D  +   +  ++ LEG  R    HA G +I    +S
Sbjct: 539  DGMKMSVANAIKAIPELREAEASADEGLRNTMMYAKMLEGTVRGTGIHACGTIICRDAIS 598

Query: 541  QLVPMYR-----DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV 594
              VP+       D    L  TQ++   IE+ GLIK DFLGLKTL++L+++++ +    G 
Sbjct: 599  DWVPVSTAEDKADPGHKLLCTQYDGHVIEETGLIKMDFLGLKTLSILKEAVENVRISTGE 658

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +DL  IP DD +TY L     T+G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP
Sbjct: 659  TIDLEKIPIDDPKTYQLYCEGRTIGTFQFESAGMQKYLRELQPSVFEDLIAMNALYRPGP 718

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +  RK    K+    P ++  LK+T G+ +YQEQVM +++ L+ ++  ++D LR
Sbjct: 719  MDYIPDFIARKRDPSKVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGQSDTLR 778

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +AMGKK+  +MDK +  F  G  KNG  K +   I+E   KFA Y FNKSHA  Y+ +++
Sbjct: 779  KAMGKKLIAQMDKLETLFYEGGMKNGHPKEVLNKIWEDWKKFASYAFNKSHATCYSWVAF 838

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-N 833
            QTA+ K HYP E++AA M+  + N+  I KF  + R   I+ + P VN   + F V    
Sbjct: 839  QTAYFKAHYPAEYMAAVMSRNLANIADITKFMDECRAMGIKTLGPDVNESRLKFSVNKHG 898

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I + LAAIKG+G   A+ I++    + P+ S+ D   RV+   +N++ +ESL  +G  D
Sbjct: 899  EIRFGLAAIKGMGDAAAQAIIQEREKNGPYTSVFDMVQRVNLSSVNKKAIESLALSGGFD 958

Query: 893  CFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
             FG +R     +       +DN+ +Y Q  +  +     ++F            + +   
Sbjct: 959  SFGIARESYFGTDSKGSTFIDNLTRYGQLFQMEQQQMRNSLFGDSNAVEVATPPVPQAER 1018

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIRLAAMVV 1002
             +S  R   E+ ++G Y S HPLD YK +L+ M   G  E    +A ++   + LA MV 
Sbjct: 1019 WSSIERLNKERDLVGIYLSAHPLDDYKIVLQAMCNTGCNELEDKMALVQKAEVTLAGMVT 1078

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +   T+ G   G+VT  + +   E  FF
Sbjct: 1079 NTRSAVTKMGKPCGFVTIEDYSGSGELAFF 1108


>gi|238028202|ref|YP_002912433.1| DNA polymerase III subunit alpha [Burkholderia glumae BGR1]
 gi|237877396|gb|ACR29729.1| DNA polymerase III, alpha subunit [Burkholderia glumae BGR1]
          Length = 1182

 Score =  725 bits (1870), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/1045 (38%), Positives = 596/1045 (57%), Gaps = 39/1045 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL+VHS +S+ +G + L++I+   AAD Q A+A+TD  N F  + F ++A +
Sbjct: 1    MAD-PRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNAFGLVRFYKEARS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L +Q
Sbjct: 60   KGIKPIAGCDVWITNHDDRDKPA----------RLLLLVRDKSGYLNLCELLSKAWLTNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I   WL+     GL+ L+G   G I  A    +++ A +    + ++F    Y+
Sbjct: 110  YRGRAEIDPQWLESELGGGLLALSGAQQGDIGIALAAGNNESARRHAQRWARVFPGSFYI 169

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR+            V+LA   +LP+VAT+   F+ +ED+ AH+  + ++   +++  
Sbjct: 170  ELQRYGQPGAEAYIQDAVKLAAELKLPVVATHPLQFMEDEDFTAHEARVCISEGDILANP 229

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T +   + ++EM  +F+DLP A+ NTVEIA+RC+  +++  P LP F   +   
Sbjct: 230  RRQKRFTTEQRFRTQAEMAELFADLPSAVLNTVEIAKRCNLTIELGKPKLPLFPTPDGMS 289

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ L   +  GLE    +L      +      Y QRLDFE   I +M F GYFLI
Sbjct: 290  L----DDYLVQLSKEGLEKRLVQLYPDEAERDAQRDTYYQRLDFECGTITKMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + KLI
Sbjct: 406  IDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLI 465

Query: 480  PNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P  P   V++   + ++   +E    +  V +LL+++Q++EGL R+   HA G++I    
Sbjct: 466  PFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVK 595
            L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  F+ +       
Sbjct: 526  LTDFCPLYAQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERFIRRLDPTKAD 585

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPGP+
Sbjct: 586  WSLAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPM 645

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 646  DLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRR 705

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+KNG+++  +  IF+L+ KFA YGFNKSHAAAYA+++Y 
Sbjct: 706  AMGKKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYY 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K H+P EF+AA+MTL MD+ +K+K    D     I+++PP +N     F+      
Sbjct: 766  TAWLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVLNGIKVLPPDINQSEYRFEPVGEAD 825

Query: 835  ------IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                  I Y L A+KG G      I+ A     PF  L DFC R+D + +NRR +E+L+ 
Sbjct: 826  GKRSKTIRYGLGAVKGSGQNAIEEILRARREGGPFKDLFDFCERIDRRMVNRRTVEALIR 885

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGA D    +R QLL S+          +         +F     +      L      +
Sbjct: 886  AGAFDSLTPNRAQLLASVP--LAMEAAEQAAANAMQAGLFDMGAES-PHAHALVDEPAWD 942

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
               R + E+  LGFY SGH  D Y+  +R+       E           +A ++ S + +
Sbjct: 943  DKRRLQEEKGALGFYLSGHLFDAYRAEVRRFARMKLGELKEGRDK---LVAGVIASLRTQ 999

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T++G  +      +   + E   F
Sbjct: 1000 MTQRGK-MIIALLDDGTGQCEITVF 1023


>gi|257064824|ref|YP_003144496.1| DNA-directed DNA polymerase III PolC [Slackia heliotrinireducens DSM
            20476]
 gi|256792477|gb|ACV23147.1| DNA-directed DNA polymerase III PolC [Slackia heliotrinireducens DSM
            20476]
          Length = 1166

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/1055 (32%), Positives = 541/1055 (51%), Gaps = 45/1055 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE---FSQKACAA- 65
            +FVHL  H+ YS+L+GA  +  ++ + A    PA+AITD   +    E     +      
Sbjct: 2    AFVHLHNHTEYSMLDGATKIKAMVRRAADLGMPAVAITDHGVMCGVPELCDAVEAVKKET 61

Query: 66   GI--QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            G+  +PI GC++       +     G      +  ++LL     GY  L+ +VS  ++ D
Sbjct: 62   GVYVKPIYGCEVYFTEDREI-----GTRKKSPLYHLILLAKNNVGYHNLLHIVSESHM-D 115

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRL 182
                  R  +  L++  +EG+I  T   SG + R     +   A      F  +F     
Sbjct: 116  NFFYKPRTTIDVLEKY-SEGIIGTTACMSGIVQRRLDDRNYADALAWTKRFADIFAPGDF 174

Query: 183  YVNLQ------RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            YV LQ      R     +   +Q+ Q+A    L  +ATN+  +L+ ED  A D+++ +  
Sbjct: 175  YVELQDQGLTSRGGLTQKEINTQLTQIAQELGLKTIATNDFHYLTREDAAAQDIMLCIGT 234

Query: 237  STVVSQKDRPRVTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
             ++   ++R R + D +      EM     D PEA +NT+E+A +C   L+  + +    
Sbjct: 235  GSLRDDENRMRFSNDEFYMKTEEEMREALKDFPEACDNTIEVAEKCFVELERDSVLPRFP 294

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVR----LAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +          EE   R +   GLE R      +  I+ G H     +R ++E +VI + 
Sbjct: 295  LPP-----GYTEEQLFREECEKGLERRYGPDWREIKISDGMHDVSVLERYEYEASVIVQQ 349

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFLIV ++I+WAK++ I VGPGRGS AG++  YA+ ITD++PL   LLFERFL+P+
Sbjct: 350  GFPAYFLIVQEYIRWAKEHGIGVGPGRGSAAGAICTYAMGITDLEPLSNGLLFERFLSPE 409

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+ MPD D+DF  +RR EVI +V+  YG + +A +ITFG LQAK A+RD  R L  PY+ 
Sbjct: 410  RVEMPDIDVDFEDERRQEVIDHVREFYGADHIAGVITFGKLQAKNAVRDAARVLGHPYNT 469

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             DRLCK+I ++    +   AI ++    +    +P    +L+ +  +EG  R    HA  
Sbjct: 470  GDRLCKVIGDELGIKLK-DAIENNPDLAKIYKEEPESREILDSAMSIEGNIRGEGVHACA 528

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             +I   PL   VP+ RD +    +TQ++  +  + GL+K DFLGL+TL +L ++   +  
Sbjct: 529  TIICRDPLVDHVPVKRDTKGGGMITQYDGHYTPELGLLKMDFLGLRTLGVLSRACRNVKD 588

Query: 592  RG-VKVDLSLIPFDDHETYHLLT---TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            R  + +    IP DD   Y L+         G+FQ+ES+        M+P    DI+A +
Sbjct: 589  RFGITIVPDEIPIDDEGAYKLMRLETPYSMDGLFQVESALYVSLFARMKPRTFSDIVASI 648

Query: 648  SLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +L RPGP++   + +Y +R+ G++ +      + P+L+ET G I+YQEQ+MQI+  +SG+
Sbjct: 649  ALNRPGPLENGFVDLYVDRRMGRKPVSYYDDRLKPLLEETYGTIVYQEQIMQISMAMSGF 708

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            S  +AD LR+AMGKK  E M + K+ + +GA +NG S  IA  I+    +FA Y FNKSH
Sbjct: 709  SAGKADKLRKAMGKKRIEVMMQLKDDWCNGAVENGFSLEIAERIWHDAEEFAKYAFNKSH 768

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAYAV+  +TA+MK HYP E++AA ++  M + +K+ K+     +  I ++PP +N+  
Sbjct: 769  SAAYAVLVCRTAYMKAHYPYEYMAAVLSSYMGSADKLIKYISSCTRNGIPVLPPDINSSN 828

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLES 884
            ++F   +  I + LA ++GVG   A  I+       PF SL DF +RVD K  NR+ LE+
Sbjct: 829  LEFTPLEEGIRFGLAGVRGVGAAVAESIIAERDEGGPFTSLHDFVNRVDGKCYNRKTLEA 888

Query: 885  LVFAGALDCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIF----AHEKGTFSDKI 938
            LV AGA D  GY+R QL+  +D   + +     +++R N   ++F      E   F + I
Sbjct: 889  LVKAGAFDSTGYTRKQLMYFIDETSLLEDVAKRQRDRENGQVSMFDLFGDMEDSGFEEDI 948

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRL 997
                    +       E+ +L  Y S HPL  Y+  LR +      +         N   
Sbjct: 949  PAPDGVEWDKRTLLAFEKSILKIYVSDHPLSQYERSLRSISKFQLGDLADHKGDIKNGVF 1008

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++ + Q K T+KG ++      +     +   F
Sbjct: 1009 CGLISTVQIKMTKKGKKMATFVMEDTTGFVDCVCF 1043


>gi|157693324|ref|YP_001487786.1| DNA polymerase III DnaE [Bacillus pumilus SAFR-032]
 gi|157682082|gb|ABV63226.1| DNA-directed DNA polymerase III alpha subunit [Bacillus pumilus
            SAFR-032]
          Length = 1111

 Score =  724 bits (1869), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1026 (35%), Positives = 569/1026 (55%), Gaps = 39/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+VHLQVHS YSLL  A  +  ++ K       A+A+TD + ++  +EF ++     I+P
Sbjct: 2    SYVHLQVHSGYSLLSSAAKVKELVLKAKELGYKALALTDDHVMYGTVEFYKECKKHDIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG    + + +                 +VLL    EGYQ LI++ S +    + K   
Sbjct: 62   VIGLTASVFIDEQ----------ETEAYPLVLLAKNNEGYQNLIKISSVL----KSKSKA 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
             +   WL+     GLI +T G SG I+     +  + A       K +FG+  +Y+ LQ 
Sbjct: 108  GLKEKWLKSYHR-GLIAITPGVSGYIETLLQHDQIEEAHHAAKQLKHIFGEGHVYIALQP 166

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                D    +++  ++   ++PLVAT +  ++  ED  A+  L A+     + + +  R 
Sbjct: 167  F-QQDESLVAKLRDVSKMADIPLVATGDVHYIKREDKMAYTCLKAIKAGQQLPEVEEDRA 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                      EM   ++   E L  TVEIA RC   L +    LP +   +    Q   +
Sbjct: 226  EKHFRTF--EEMKEWYTQDTELLTRTVEIADRCEVDLNLGQTKLPSYPTPD----QSTAD 279

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     G++ R              Y +RL++EL++I +M FS YFLIV DF+++A 
Sbjct: 280  QFLRKVCAEGMKQRKI-------ASNDAYVKRLEYELSIIQKMNFSDYFLIVWDFMKYAH 332

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I  GPGRGS AGS+ AY L ITD+DPL   LLFERFLNP+R+SMPD DIDF   RRD
Sbjct: 333  DQGIVTGPGRGSAAGSLVAYVLFITDVDPLCHGLLFERFLNPERISMPDIDIDFPDTRRD 392

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+I YV++KYG   VAQI+TFG+L AKAALRDVGR + +     DRL KLIP+ P   + 
Sbjct: 393  EIISYVKDKYGDMHVAQIVTFGTLAAKAALRDVGRVMGIDSKAADRLAKLIPSKPGTTLK 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
               +      +        + ++ + + K+EGL RH STHAAG+V+ + PL+++VP+  D
Sbjct: 453  EA-LTASPELKTMLQQSEELSQVFQTALKVEGLPRHTSTHAAGVVLSEEPLTEIVPIQ-D 510

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFLAQRGVKVDLSLIPFDDHE 607
                + +TQ+ M ++E  GL+K DFLGL+ LTL++        Q  V ++ S I ++D +
Sbjct: 511  GHDGVYLTQYAMNYLEDLGLLKMDFLGLRNLTLIESIKNQIERQENVHINFSDISYEDQK 570

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL+   T GIFQLES GMRQ L  ++P  +EDI+A+ +LYRPGP++NI ++ +RK+G
Sbjct: 571  TFELLSAGDTTGIFQLESQGMRQVLRRLKPSSLEDIVAVNALYRPGPMENIPLFIDRKHG 630

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            + K+   HP +  +LK+T GVI+YQEQ+M IA  ++G+ L EAD+LRRA+ KK K+ +D+
Sbjct: 631  RVKVSYPHPDLYDILKDTYGVIVYQEQIMLIAAKMAGFQLGEADLLRRAVSKKDKKVLDE 690

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ G  K      IA ++++L+ KFA+YGFN+SHA AY++I +Q A++K HYP+ F
Sbjct: 691  ERSHFVEGCLKKEYPVNIANDVYDLIVKFANYGFNRSHAVAYSMIGFQLAYLKAHYPLYF 750

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +   +T  + N +K+ ++  +A++  I ++ PS+N     F V    I YSL AIK VG 
Sbjct: 751  MCGLLTSVIGNQDKVAQYFYEAKEKGISVLKPSINKSEFPFTVEKGEIRYSLRAIKNVGV 810

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            +  + I  A  +KPF+ L DFC+RV +K +NR+ +E+L+F+GA+D    +R  LL S+D 
Sbjct: 811  SAVKDIYRARQEKPFEDLFDFCARVSAKSVNRKTIEALIFSGAMDELYPNRASLLASIDI 870

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
               +  ++     +   +       TFS K    +          + E+  LG Y S HP
Sbjct: 871  ALDHVSFLN---PDDQLDFLGDT--TFSIKPKYAEIEELPLVDLLQFEKEALGLYLSNHP 925

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            +  Y+  LR+ G        + I+   + +  ++   +  +T+ G  + +VTF +   E 
Sbjct: 926  VQAYRDRLRENGAVEIIRLSSFIK-RKVSMGGLLTKVKSIRTKNGQSMAFVTFGDETGEM 984

Query: 1028 EANFFP 1033
            E   FP
Sbjct: 985  EGVVFP 990


>gi|312888892|ref|ZP_07748454.1| DNA polymerase III, alpha subunit [Mucilaginibacter paludis DSM
            18603]
 gi|311298633|gb|EFQ75740.1| DNA polymerase III, alpha subunit [Mucilaginibacter paludis DSM
            18603]
          Length = 1195

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/1067 (33%), Positives = 564/1067 (52%), Gaps = 48/1067 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL VH+ +SLL+GA  ++ +  K AAD   A+AITD  N+F   +F  +A    ++
Sbjct: 2    PDFSHLHVHTQFSLLDGAADISKLYKKAAADGMKALAITDHGNMFGVFKFVAEAGKHNVK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+GC+  +    + K   + K         + L   AEGY+ LI+L S  Y+     + 
Sbjct: 62   PIVGCEFYVVDDRHKKQFTKEKKDVRR--HQLFLAKNAEGYKNLIKLCSLGYMEGLYSKW 119

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             RI    + +   +GLI  +      + +A    + + AE     +  LFG+  Y+ LQR
Sbjct: 120  PRIDKELILKYH-KGLIATSCCIGASVPQAILKATEEEAETEFKWWLDLFGEDYYIELQR 178

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK---- 243
            H   ++    + +++ A  + +  + +N+S ++ ++D  AHD+L+ V    + S      
Sbjct: 179  HEIPEQTIINNTLLKYAKKYNVKTICSNDSHYVDQQDSNAHDILLCVNTGDMQSTPIATD 238

Query: 244  -------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
                            Y K ++EM  +F D+PE+L+NT EI  +   +      +LP F 
Sbjct: 239  EEGGKGYRFGFPNDQFYFKTQAEMGQLFHDIPESLDNTNEIVDKVDVLKLKRDIMLPNFP 298

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                  I    E++  N+      +            + +  +R++FEL  I  M F+GY
Sbjct: 299  IPPEFAIHTGPESDTLNQWEYLKHLTFTGAKERYIDISLETEERINFELFTIRTMGFAGY 358

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFI+  +   + +GPGRGS AGSV AY   IT+IDP++++LLFERFLNPDR SMP
Sbjct: 359  FLIVADFIKHGRDIGVFIGPGRGSAAGSVVAYCTGITNIDPMKYNLLFERFLNPDRKSMP 418

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D DF  + R +VI YV  KYG  +VAQIIT+GS+ A+ +++DVGR L MP S+V+ + 
Sbjct: 419  DIDTDFDDEGRQKVIDYVVEKYGKNQVAQIITYGSMAARTSIQDVGRVLDMPLSEVNLMK 478

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KL+P+     +   AI      +     +    ++L  ++KLEG  R+   HAAGI+I  
Sbjct: 479  KLVPDTLGITLK-DAIEQVPELKAILEGNDLRSQVLRAAEKLEGSVRNTGVHAAGIIIAP 537

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              L+ +VP+     SDL VTQ++ + IE AG+IK DFLGLKTLT+++ +L  + Q    +
Sbjct: 538  DDLTNIVPVAVAKDSDLLVTQYDGRVIEDAGVIKMDFLGLKTLTIIKGALRMIKQNHGRE 597

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D+  I  DD +TY L     T G FQ ES GM+  L  ++PD  ED+IA+ +LYRPGPI
Sbjct: 598  IDIDYIDLDDQKTYELYQRGDTNGTFQFESDGMQMYLRDLKPDKFEDLIAMNALYRPGPI 657

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            + I  +  RK+G E I    P ++  L ET G+ +YQEQVM ++Q L+G+S  +ADVLR+
Sbjct: 658  EYIPNFIKRKHGLEPITYDLPDMEEYLAETYGITVYQEQVMLLSQKLAGFSKGDADVLRK 717

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  E ++K + +F+SGA+  G  K     I+     FA Y FNKSH+  YA+++YQ
Sbjct: 718  AMGKKQIEILNKMEAQFVSGATAKGHPKDKLTKIWNDWKAFAQYAFNKSHSTCYALVAYQ 777

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834
            TA++K HYP E++A+ +  + +  EKI  F ++ R+    ++ P VN   V F   G+  
Sbjct: 778  TAYLKAHYPSEYMASVLNNQNNM-EKISFFMEECRRMGTLVLGPDVNESSVLFTATGNGN 836

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L+ IKGVG      I+E    +  F S+ +F  R ++K +NR+  E++V++GA D 
Sbjct: 837  IRFGLSGIKGVGDKAVESIIEERDKNGAFTSVYEFAQRSNTKAVNRKSYENMVYSGAFDS 896

Query: 894  FGYSRMQLLQ--------SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            FG+ R Q            ++ + KYA   +  + +   ++F     ++  + T+ +   
Sbjct: 897  FGFKRAQFFAKTENGVLSGIERLTKYANDYQNTQNSSQSSLFGGSVASYIPEPTMPEAEE 956

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-----VATIRG-------- 992
                 + + E+ V+G Y +GHPLD YK  L +       +      +    G        
Sbjct: 957  FPLIEKLKYEKEVIGIYLTGHPLDNYKIELERFCKHTVADLKLIQRMKNKEGGEETEIAF 1016

Query: 993  -------NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   + + +  ++ S Q K T+ G   G   F +    YE   F
Sbjct: 1017 NNLRRTASELSIGGLLSSVQHKTTKTGKPFGTFVFEDYFDSYEFALF 1063


>gi|54023768|ref|YP_118010.1| DNA polymerase III subunit alpha [Nocardia farcinica IFM 10152]
 gi|54015276|dbj|BAD56646.1| putative DNA polymerase III alpha subunit [Nocardia farcinica IFM
            10152]
          Length = 1196

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/1065 (29%), Positives = 518/1065 (48%), Gaps = 45/1065 (4%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              S SFVHL  H+ YS+L+GA  ++ +  +       A+ +TD  N++ A EF   A   
Sbjct: 17   ASSGSFVHLHNHTEYSMLDGAAKISPLFTEAKRLGMTAVGMTDHGNMYGASEFYNSAKKH 76

Query: 66   GIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            G++PIIG +  I                       +       + ++   A G + L +L
Sbjct: 77   GLKPIIGIEAYIAPGSRFDTKRVQWGDPGQKGDDVSGSGAYTHMTMVAENATGLRNLFKL 136

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S   +  Q  +  R+    + +   EG+I  TG  SG +         + A +    ++
Sbjct: 137  SSLASIEGQLGKWARMDAEIIAQ-HAEGIIATTGCPSGEVQTRLRLGHEREALEAAAKWQ 195

Query: 176  KLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            ++FG D  ++ +  H    +R     ++ +     +P +ATN+  ++ E D   H+ L+ 
Sbjct: 196  EIFGPDNFFLEVMDHGLSIERRVREGLLDIGRKLGIPPLATNDCHYVYESDAANHEALLC 255

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            V     +S   R +     Y     + +    D          +                
Sbjct: 256  VQTGKTLSDPTRFKFDGSGYYLKSGDEMRAIWDAEVPGACDNTLLIGERVQSYDAVWEHR 315

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
              +        + + + L  + + GLE R   G        ++Y +R ++EL+VI  M F
Sbjct: 316  DRMPIFPVPEGETQASWLHKEVMRGLERRFPNGV------PEEYLRRAEYELDVICEMGF 369

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL+V D I  A++  I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R+
Sbjct: 370  PAYFLVVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERV 429

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPD DIDF   RR E++RY   K+G +RVAQ+ITFG+++ KAA++D  R          
Sbjct: 430  SMPDIDIDFDDRRRGEMVRYATEKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGFAI 489

Query: 474  R-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
                        + K IP         +   + +  RE    +P V ++ E ++ LEGL 
Sbjct: 490  ADQISKALPPPIMAKDIPLSGIMDPEHERYKEAAEVRELIANNPDVAKIYETARGLEGLI 549

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R+A  HA  +++   PL   +P+++  +    +T ++    E  GL+K DFLGL+ LT++
Sbjct: 550  RNAGVHACAVIMSSEPLMDAIPLWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVI 609

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              +LD +   RG+ +D+  +P DD  TY LL+   TLG+FQL+ S MR  L  MQP   E
Sbjct: 610  GDALDNIKANRGIDLDMDNLPLDDPATYELLSRGDTLGVFQLDGSAMRDLLRRMQPTGFE 669

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQV 695
            DI+A+++LYRPGP+       Y +RKNG++++  IHP ++  LK    +T G+I+YQEQ+
Sbjct: 670  DIVAVLALYRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKDILADTYGLIVYQEQI 729

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            MQIAQ ++GYSL  AD+LRRAMGKK  E ++ + E F +G  +NG SK     +++ +  
Sbjct: 730  MQIAQKVAGYSLGRADILRRAMGKKKAEVLEAEFEGFEAGMLENGFSKPAIKALWDTILP 789

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSHAA Y ++S+ TA++K +YP E++A  +T   D+ +K   +  D R+  I 
Sbjct: 790  FAGYAFNKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLSDCRRLGIT 849

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDS 874
            ++PP VN    +F      I + L A++ VG      I++A  +K  F    D+ +++D+
Sbjct: 850  VLPPDVNESEQNFASVGKDIRFGLGAVRNVGANVVASIIQARKEKSKFTDFSDYLNKIDA 909

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
                ++V ESL+ AGA D  G+ R  L+    +        +K       ++F       
Sbjct: 910  IACTKKVTESLIKAGAFDSLGHPRKGLMLIHSDAIDAVMATKKAEAIGQFDLFGGMDADE 969

Query: 935  SDK----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-- 988
            S      + +       +  +   E+ +LG Y SGHPL+  + +L           +   
Sbjct: 970  SVTSVFNVKVPD-EEWETKHKLALEREMLGLYVSGHPLNGVEHVLAAQADTQIPAILEGD 1028

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               G  + +  ++ S  ++  + G         +     E  FFP
Sbjct: 1029 VKDGAQVTIGGILASVNRRINKNGLAWASAQLEDLTGGIEVLFFP 1073


>gi|304321355|ref|YP_003854998.1| DNA polymerase III subunit alpha [Parvularcula bermudensis HTCC2503]
 gi|303300257|gb|ADM09856.1| DNA polymerase III, alpha subunit [Parvularcula bermudensis HTCC2503]
          Length = 1152

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 516/1041 (49%), Positives = 671/1041 (64%), Gaps = 27/1041 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+  FVHL +HSSYSL EGA+ ++  L      Q PA+A+TDTNNLF ALE ++   A
Sbjct: 1    MAKT--FVHLHLHSSYSLAEGAIPVSKALQLAKGHQMPALAVTDTNNLFGALEVAEILSA 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPI G +L +  +         +     + SIVLL   A G++RL+ L S  +L   
Sbjct: 59   EGVQPIPGIELKVATES----AEPVRDEAGNLASIVLLAQNAVGFERLMALSSEAFLTPL 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              ++  + LS + +  TEGLI L+GG+ GPIDR         A   L      F  R YV
Sbjct: 115  EGETTGVPLSAVLQR-TEGLICLSGGALGPIDRLLAEGRCSEALALLDRMAAAFPQRFYV 173

Query: 185  NLQRHRGYDRY-------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             LQRH  +DR         E  +V+ AY   LP+VATNN  F S  D+ AHD L+ +A  
Sbjct: 174  ELQRHPHHDRTDQQGRYPEERALVEAAYARSLPIVATNNVYFPSPADHAAHDALLCIAGG 233

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
              +S+ DR  V+ DHY K+  EM  +F DLPEA+E TVE+A+RC+F  + H PI      
Sbjct: 234  RYLSEVDRRLVSEDHYFKSAEEMSGLFKDLPEAIETTVEVAQRCAFRPRTHQPI-----L 288

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                     E  ELR +A  GL  RLA   I      QDY  RL+ EL +I +M F GYF
Sbjct: 289  PSFAGDLAGEVAELRRQAEEGLAARLAD--IPAAAPHQDYYDRLERELGIIEKMGFPGYF 346

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFIQWAK   IPVGPGRGSGAGS+ AYALTITD+DPLRF LLFERFLNP+R+SMPD
Sbjct: 347  LIVADFIQWAKSAGIPVGPGRGSGAGSLVAYALTITDLDPLRFHLLFERFLNPERVSMPD 406

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQDRRDEVI YV+++YG +RVAQIITFG LQA+A LRDVGR LQMP+ QVDRLCK
Sbjct: 407  FDIDFCQDRRDEVIAYVRDRYGADRVAQIITFGKLQARAVLRDVGRVLQMPFGQVDRLCK 466

Query: 478  LIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            ++PN+PA+PV+L+   D + RFRE R  DP V  L++ + +LEGLYRHASTHAAG+VIGD
Sbjct: 467  MVPNNPANPVTLKEAVDGEPRFREERERDPMVGTLIDTALRLEGLYRHASTHAAGVVIGD 526

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            RPL++LVP+YRD RSD+P TQ+NMKW+E AGL+KFDFLGLKTLT++Q++LDFL   G  +
Sbjct: 527  RPLTELVPLYRDSRSDMPATQYNMKWVEPAGLVKFDFLGLKTLTVIQRALDFLKADGTDL 586

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D+S IP DD  TY +L     +G+FQLES+GMR  L+G+Q DC+EDIIALVSLYRPGP+D
Sbjct: 587  DISAIPLDDPATYDMLGRGAAIGVFQLESAGMRATLKGLQADCLEDIIALVSLYRPGPMD 646

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            NI  Y  RK G+E    +HPL++ +LKET GVIIYQEQVMQIAQ+L+GYSL EAD+LRRA
Sbjct: 647  NIPTYIERKAGREPPDYLHPLLEDVLKETYGVIIYQEQVMQIAQILAGYSLGEADLLRRA 706

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK KEEMDKQK RF+ GA++ G+S   A  IFEL+AKFA YGFNKSHAAAYA +SYQT
Sbjct: 707  MGKKKKEEMDKQKIRFVDGAAEKGVSAAKAEGIFELVAKFAGYGFNKSHAAAYAWVSYQT 766

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K ++P  FLAASM+L+    +K+  F  +A++  + + PP VN    DF V    + 
Sbjct: 767  AYLKANHPAAFLAASMSLDQSLTDKLSVFVAEAKRCGVVVEPPCVNESQADFAVSGETLR 826

Query: 837  YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            Y+L A+K VG    + +    A   PF  L D   RVD +K+ +R LE L  AGA D  G
Sbjct: 827  YALGALKNVGAEGMQVLTTERARGGPFRDLYDLAERVDLRKVGKRSLEQLARAGAFDALG 886

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFEN 954
              R   + + D + +Y+    + R +    +F    +G    +  L +     +  R E 
Sbjct: 887  VDRASAMAAADFLLRYSAAAAEERGSAQAGLFGGMAEGESLARPALPQCPPWPNVERLEQ 946

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI---RGNNIRLAAMVVSKQQKKTRK 1011
            E+  LGFY SGHPLD +  +L   G   Y +  + +      ++ LA  V    +++++ 
Sbjct: 947  ERTALGFYMSGHPLDDFDSLLAAKGAVSYADIASVVGEGESRHVCLAGAVNEVTRRRSKS 1006

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G    WV  S+ + ++E   F
Sbjct: 1007 GKPFAWVRLSDRSGDFEVTVF 1027


>gi|182439233|ref|YP_001826952.1| DNA polymerase III subunit alpha [Streptomyces griseus subsp. griseus
            NBRC 13350]
 gi|178467749|dbj|BAG22269.1| putative DNA polymerase III alpha subunit [Streptomyces griseus
            subsp. griseus NBRC 13350]
          Length = 1178

 Score =  724 bits (1868), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/1066 (30%), Positives = 531/1066 (49%), Gaps = 46/1066 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ +         IA+TD  NL  A +F   A  
Sbjct: 1    MTKPP-FTHLHVHTQYSLLDGAARLKDMFEAANEMGMTHIAMTDHGNLHGAYDFFHSAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            A + PIIG +  +  +                    +         +  S   G   L  
Sbjct: 60   ADVTPIIGIEAYVAPESRKHKRKVQWGQPHQKRDDVSGSGGYTHKTIWASNKTGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EGLI  TG  SG +           A +    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDY 178

Query: 175  KKLFGD-RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            K +FG+ R ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  KDIFGEGRYFLELMDHGIEIERRVRDGLLEIGKKLNIPPLVTNDSHYTYAHEATAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             +     +S  DR R     Y    +       D  +A +         +  +       
Sbjct: 239  CIQTGKNLSDPDRFRFDGTGYYLK-TTDEMYAVDSSDAWQEGCANTLLVAQQIDTTGMFE 297

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             + +  + +      E    + +   G+  R   G         D ++++++E+++I +M
Sbjct: 298  AKNLMPKFEIPDGFTEVTWFQEEVRVGMARRFPNGV------PDDRQKQVEYEMDIIIQM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+ 
Sbjct: 412  RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471

Query: 472  VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DRL K +P D     +             ++    R    ++P V ++++ ++ +EGL 
Sbjct: 472  GDRLTKAMPADVLGKGIDLNGITDPKHPRYSEAGEIRGMYESEPDVKKVIDTAKGVEGLV 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ LT++
Sbjct: 532  RQMGVHAAGVIMSSEPIVDHAPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  +   +G+ +++  +P DD +TY LL    TLG+FQ +   MR  L  MQPD  E
Sbjct: 592  DDAIKMVKSNKGIDLEMLALPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQPDNFE 651

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695
            DI A+ +LYRPGP+       Y  RKNG+++I  IHP ++  LKE    T G+I+YQEQV
Sbjct: 652  DISAVSALYRPGPMGMNSHTNYAERKNGRQEITPIHPELEEPLKEVLGLTYGLIVYQEQV 711

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+++GYSL EAD+LRR MGKK  EE+ K    F  GA + G S     +++++L  
Sbjct: 712  QKAAQIVAGYSLGEADILRRVMGKKKPEELAKNFVLFEKGAKEKGFSDAAIKSLWDVLVP 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+  I+
Sbjct: 772  FAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMGIK 831

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            ++PP+VN    +F   GD+ I + L AI+ VG      I+ +      + +  DF  +V+
Sbjct: 832  VLPPNVNESLSNFAAQGDDVILFGLTAIRNVGQNVVDSIIRSRKAKGKYSTFPDFLDKVE 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +   N+R +ESL+ AGA D  G++R  L+   + +      V++       ++F   +  
Sbjct: 892  AVVCNKRTVESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGGGEEE 951

Query: 934  FSDKITLEKFS----VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-- 987
              +                +     E+ +LG Y S HPL   + +L         + +  
Sbjct: 952  SGEPGFGLDVEFSDIEWEKAYLLAQEREMLGLYVSDHPLFGLEHVLSDKADSSISQLMGG 1011

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1012 DYGDGAIVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1057


>gi|314918129|gb|EFS81960.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL050PA1]
          Length = 1190

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/1077 (31%), Positives = 540/1077 (50%), Gaps = 59/1077 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S  FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +  
Sbjct: 1    MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59

Query: 65   AG------IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVL 101
                    I+PIIG +  +                    D      +  +       + +
Sbjct: 60   YDGDQNPLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                +EG   L  L S     +      R+    + +  + G+I  TG  SG +      
Sbjct: 120  WAKDSEGLHDLFRLSSLAS-YEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRL 177

Query: 162  NSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
               + A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S +
Sbjct: 178  GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            ++E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ + 
Sbjct: 238  VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
                   +V   +         +   + +E+ LR K   GL+ +            ++  
Sbjct: 298  EMIGSYDEVFKYVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVL 349

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RL+ EL+VI  + FS YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  I+PL
Sbjct: 350  ERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPL 409

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++AKAA+
Sbjct: 410  EHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAAV 469

Query: 459  RDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVD 509
            +D  R L  P++  D++ K +P D     V L  I D S         FR+    +P V 
Sbjct: 470  KDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDVA 529

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ GL+
Sbjct: 530  KVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLM 589

Query: 570  KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K DFLGL+ L ++   +  +   RG+ VDL  I  DD  TY +L    TLG+FQL+ + M
Sbjct: 590  KMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGTAM 649

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPML 682
            R  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E ++ IHP +    D +L
Sbjct: 650  RSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPVIPIHPELKEDLDEIL 709

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
              T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G S
Sbjct: 710  APTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYS 769

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
                  +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +K+
Sbjct: 770  DDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKM 829

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861
              +  D R  +I ++PP VN   ++F      I + L AI+ VG      I+ A   + P
Sbjct: 830  AMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRAREENGP 889

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
                  F  +V     N+R++ESL+ AGA D  G+SR  L+            +++N+ N
Sbjct: 890  APDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQAN 949

Query: 922  KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
              +++F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L   
Sbjct: 950  GQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAE 1009

Query: 979  GIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  E V           +  MV    ++ T+ G     VT  +         FP
Sbjct: 1010 SDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066


>gi|149926718|ref|ZP_01914978.1| DNA polymerase III subunit alpha [Limnobacter sp. MED105]
 gi|149824647|gb|EDM83863.1| DNA polymerase III subunit alpha [Limnobacter sp. MED105]
          Length = 1176

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/1069 (37%), Positives = 590/1069 (55%), Gaps = 61/1069 (5%)

Query: 5    LEKSP-----SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
            +  S      +FVHL++H+ +S+L+G + +   +   A    PA+AI+D +NLF  ++F 
Sbjct: 1    MTNSSPTLPSTFVHLRMHTEFSVLDGMVRVGEAVKAAAGCGMPALAISDLSNLFGLIKFY 60

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
             KA  AG++PI  C + I+   + +              ++LLV   +GY +L EL+SR 
Sbjct: 61   GKARGAGVKPIAACDVWIESDRDEEQPA----------RMLLLVQNHKGYLQLCELLSRA 110

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +L +Q +    +   W  E+G +GLI ++G +S  I +     +   AE     F K F 
Sbjct: 111  FLRNQKRGKATLKFEWFDEVGCDGLIAISGFASSDIGQFLLGGNMARAEDSARKFLKHFE 170

Query: 180  DRLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             R Y+ LQR           +  QLA   +LP+VAT+   FL  ED+ AH+  + +A   
Sbjct: 171  GRYYIELQRDGSTQAENLVNLSCQLAAKLQLPVVATHPIQFLKPEDFRAHEARVCIAQGE 230

Query: 239  VVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            ++S   RPR  T   Y K   EM  +F+D+P A+ N++ IA+RC+  L++  P LP F  
Sbjct: 231  ILSNPRRPRRFTEQQYFKTAQEMAELFADIPSAIRNSIRIAQRCNLTLELGKPKLPAFPT 290

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFS 354
             +        ++ L + +  GLE RLA    +     +   +Y  RL  E + I  M F 
Sbjct: 291  PDGM----TLDDYLVHLSKEGLEKRLAHLFPSIEEREKMRPEYEARLKIECDTIIGMGFP 346

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV DFI W KKN +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+S
Sbjct: 347  GYFLIVQDFINWGKKNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYDLLFERFLNPERVS 406

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFDIDFCQD RD VI YV+  YG + V+QI TFG+L AKA +RD GR L MPY   D 
Sbjct: 407  MPDFDIDFCQDNRDRVIDYVKQNYGRDAVSQIATFGTLGAKAVIRDAGRVLDMPYMYCDG 466

Query: 475  LCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            L KLIP  PA P    +A+AD+  FRE    +     ++ +++ LEGL R+   HA G++
Sbjct: 467  LSKLIPQTPADPWDLDRAMADEPTFRERVENEDEAKEIIAVARPLEGLTRNVGMHAGGVL 526

Query: 534  IGDRPLSQLVPMYRDVRS-DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            I    L+   P+Y    S D  V+Q++   +E  GL+KFDFLGL+ LT+L  ++ ++ + 
Sbjct: 527  IAPGKLTDFCPLYCADGSTDSVVSQYDKDDVEAVGLVKFDFLGLRNLTILDWAVRWVREN 586

Query: 593  G---VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                    L  +P DD   Y L +   T  +FQ ES   +   + ++PD  EDIIAL++L
Sbjct: 587  YEDQRDFRLEDLPLDDPAVYQLFSDGNTTAVFQSESRSAKDLEKKLKPDNFEDIIALMAL 646

Query: 650  YRPGPIDNIVVYNNRKNGK--------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
             RPGP+ + +V +     K              HP ++ +LK T GVI+YQEQVM +AQ+
Sbjct: 647  NRPGPLGSGMVDDFIARKKETSKTGKGRAEWYFHPKLEGILKSTYGVIVYQEQVMLVAQI 706

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            L+GYSL  AD+LRRAMGKK  EEM KQ+E F +GA++ G+   +A  +F+L+ KFA+YGF
Sbjct: 707  LAGYSLGGADLLRRAMGKKKPEEMAKQREIFTTGATERGVDPAVAKQLFDLMEKFAEYGF 766

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI------- 814
            NKSH+AAYA+I+Y TAW+K HYP EF+AASM+ +MD+ +K+K F +DA            
Sbjct: 767  NKSHSAAYALIAYHTAWLKAHYPAEFMAASMSSDMDDTDKVKIFVEDAMAMCQVPGKKAG 826

Query: 815  ---QIMPPSVNTPCVDFKVGD-------NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFD 863
                ++ P VN     F           + I Y L A+KG G      I+    A+ PF 
Sbjct: 827  TTVTMLGPDVNESNFRFTAVRIDGEKRASAIRYGLGAVKGTGQAACEAIVAERNANGPFT 886

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
            SL DF  RVDSK++NRRV+E+L+ AGA D     R +LL S     ++A       +   
Sbjct: 887  SLFDFVKRVDSKQINRRVIEALIRAGAFDALNPDRAKLLASSGQAMEWAAQQAATASQ-- 944

Query: 924  ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
             ++F  + G  +    L +    +   + + E+  LG+YFSGH     +  +R+      
Sbjct: 945  VSLFGEDLGGDAP-PELVEVPTWSEREKLQQEKAALGYYFSGHLFKADEANVRQFVKLRL 1003

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++         + +A ++ S +   T++G  +  V   +   + E + F
Sbjct: 1004 KDLSPGRD--MVWMAGVIASLRTMMTKRGK-MAIVLLDDSTAQVELSIF 1049


>gi|314923593|gb|EFS87424.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL001PA1]
 gi|314966638|gb|EFT10737.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL082PA2]
 gi|314981367|gb|EFT25461.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL110PA3]
 gi|315092033|gb|EFT64009.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL110PA4]
 gi|315103640|gb|EFT75616.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL050PA2]
 gi|315105689|gb|EFT77665.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL030PA1]
 gi|327327462|gb|EGE69238.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL103PA1]
          Length = 1190

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/1077 (31%), Positives = 539/1077 (50%), Gaps = 59/1077 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S  FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +  
Sbjct: 1    MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59

Query: 65   AG------IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVL 101
                    ++PIIG +  +                    D      +  +       + +
Sbjct: 60   YDGDQNPLVKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                +EG   L  L S     +      R+    + +    G+I  TG  SG +      
Sbjct: 120  WAKDSEGLHNLFRLSSLAS-YEGYYMKPRMDRELMGQYP-GGIIASTGCPSGEVQTRLRL 177

Query: 162  NSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
               + A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S +
Sbjct: 178  GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            ++E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ + 
Sbjct: 238  VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
                   +V   +         +   + +E+ LR K   GL+ +            ++  
Sbjct: 298  EMIGSYDEVFKYVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVL 349

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RL+ EL+VI  + F+ YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  I+PL
Sbjct: 350  ERLETELSVIEPLGFASYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPL 409

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++AKAA+
Sbjct: 410  EHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAAV 469

Query: 459  RDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVD 509
            +D  R L  P++  D++ K +P D     V L  I D S         FR+    +P V 
Sbjct: 470  KDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDVA 529

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ GL+
Sbjct: 530  KVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLM 589

Query: 570  KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K DFLGL+ L ++   +  +   RG+ VDL  I  DD  TY +L    TLG+FQL+ + M
Sbjct: 590  KMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGTAM 649

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPML 682
            R  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP +    D +L
Sbjct: 650  RSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEIL 709

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
              T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G S
Sbjct: 710  APTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYS 769

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
                  +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +K+
Sbjct: 770  DDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKM 829

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861
              +  D R  +I ++PP VN   ++F      I + L A++ VG      I+ A   + P
Sbjct: 830  AMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRAREENGP 889

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
                  F  +V     N+R++ESL+ AGA D  G+SR  L+            +++N+ N
Sbjct: 890  APDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQAN 949

Query: 922  KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
              +++F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L   
Sbjct: 950  GQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAE 1009

Query: 979  GIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  E V           +  MV    ++ T+ G     VT  +         FP
Sbjct: 1010 SDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066


>gi|313764330|gb|EFS35694.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL013PA1]
 gi|313815868|gb|EFS53582.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL059PA1]
 gi|314915320|gb|EFS79151.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL005PA4]
 gi|314920206|gb|EFS84037.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL050PA3]
 gi|314931729|gb|EFS95560.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL067PA1]
 gi|314955630|gb|EFT00032.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL027PA1]
 gi|314958026|gb|EFT02129.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL002PA1]
 gi|315098658|gb|EFT70634.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL059PA2]
 gi|315101339|gb|EFT73315.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL046PA1]
 gi|327450658|gb|EGE97312.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL087PA3]
 gi|327454004|gb|EGF00659.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL083PA2]
 gi|328753262|gb|EGF66878.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL025PA2]
 gi|328754076|gb|EGF67692.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL087PA1]
          Length = 1190

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/1077 (31%), Positives = 540/1077 (50%), Gaps = 59/1077 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S  FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +  
Sbjct: 1    MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59

Query: 65   AG------IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVL 101
                    I+PIIG +  +                    D      +  +       + +
Sbjct: 60   YDGDQNPLIKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                +EG   L  L S     +      R+    + +  + G+I  TG  SG +      
Sbjct: 120  WAKDSEGLHDLFRLSSLAS-YEGYYMKPRMDRELMGQY-SGGIIASTGCPSGEVQTRLRL 177

Query: 162  NSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
               + A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S +
Sbjct: 178  GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            ++E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ + 
Sbjct: 238  VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
                   +V   +         +   + +E+ LR K   GL+ +            ++  
Sbjct: 298  EMIGSYDEVFKYVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVL 349

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RL+ EL+VI  + FS YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  I+PL
Sbjct: 350  ERLETELSVIEPLGFSSYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPL 409

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++AKAA+
Sbjct: 410  EHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAAV 469

Query: 459  RDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVD 509
            +D  R L  P++  D++ K +P D     V L  I D S         FR+    +P V 
Sbjct: 470  KDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDVA 529

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ GL+
Sbjct: 530  KVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLM 589

Query: 570  KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K DFLGL+ L ++   +  +   RG+ VDL  I  DD  TY +L    TLG+FQL+ + M
Sbjct: 590  KMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGTAM 649

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPML 682
            R  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E ++ IHP +    D +L
Sbjct: 650  RSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPVIPIHPELKEDLDEIL 709

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
              T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G S
Sbjct: 710  APTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYS 769

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
                  +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +K+
Sbjct: 770  DDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKM 829

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861
              +  D R  +I ++PP VN   ++F      I + L AI+ VG      I+ A   + P
Sbjct: 830  AMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAIRNVGANAVAEIIRAREENGP 889

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
                  F  +V     N+R++ESL+ AGA D  G+SR  L+            +++N+ N
Sbjct: 890  APDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQAN 949

Query: 922  KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
              +++F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L   
Sbjct: 950  GQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAE 1009

Query: 979  GIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  E V           +  MV    ++ T+ G     VT  +         FP
Sbjct: 1010 SDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066


>gi|315092840|gb|EFT64816.1| DNA polymerase III subunit alpha [Propionibacterium acnes HL060PA1]
          Length = 1190

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/1077 (31%), Positives = 539/1077 (50%), Gaps = 59/1077 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S  FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +  
Sbjct: 1    MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59

Query: 65   AG------IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVL 101
                    ++PIIG +  +                    D      +  +       + +
Sbjct: 60   YDGDQNPLVKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                +EG   L  L S     +      R+    + +    G+I  TG  SG +      
Sbjct: 120  WAKDSEGLHNLFRLSSLAS-YEGYYMKPRMDRELMGQYP-GGIIASTGCPSGEVQTRLRL 177

Query: 162  NSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
               + A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S +
Sbjct: 178  GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            ++E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ + 
Sbjct: 238  VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
                   +V   +         +   + +E+ LR K   GL+ +            ++  
Sbjct: 298  EMIGSYDEVFKYVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVL 349

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RL+ EL+VI  + F+ YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  I+PL
Sbjct: 350  ERLETELSVIEPLGFASYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPL 409

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++AKAA+
Sbjct: 410  EHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAAV 469

Query: 459  RDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVD 509
            +D  R L  P++  D++ K +P D     V L  I D S         FR+    +P V 
Sbjct: 470  KDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDVA 529

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ GL+
Sbjct: 530  KVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLM 589

Query: 570  KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K DFLGL+ L ++   +  +   RG+ VDL  I  DD  TY +L    TLG+FQL+ + M
Sbjct: 590  KMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGTAM 649

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPML 682
            R  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP +    D +L
Sbjct: 650  RSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEIL 709

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
              T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G S
Sbjct: 710  APTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYS 769

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
                  +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +K+
Sbjct: 770  DDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKM 829

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861
              +  D R  +I ++PP VN   ++F      I + L A++ VG      I+ A   + P
Sbjct: 830  AMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRAREENGP 889

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
                  F  +V     N+R++ESL+ AGA D  G+SR  L+            +++N+ N
Sbjct: 890  APDFFTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQAN 949

Query: 922  KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
              +++F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L   
Sbjct: 950  GQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAE 1009

Query: 979  GIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  E V           +  MV    ++ T+ G     VT  +         FP
Sbjct: 1010 SDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066


>gi|94309699|ref|YP_582909.1| DNA polymerase III subunit alpha [Cupriavidus metallidurans CH34]
 gi|93353551|gb|ABF07640.1| DNA polymerase III alpha subunit [Cupriavidus metallidurans CH34]
          Length = 1176

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1054 (38%), Positives = 613/1054 (58%), Gaps = 45/1054 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P FVHL++HS YS+++G + L++ +   A D   A+A+TD  N F  + F ++A   G
Sbjct: 11   SAPRFVHLRLHSEYSIVDGIVRLDDAVKAAARDGMGALALTDLANAFGLIRFYKEARGGG 70

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++P++G  + +   ++                ++LLV    GY  L  L+SR +L +Q +
Sbjct: 71   VKPVVGADVWLTNAEDRDKPA----------RMLLLVQDRIGYLNLCTLLSRAWLGNQHR 120

Query: 127  QSVRICLSWLQEIGTEGL------IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                    WL E G EGL      I L+G   G + +A    + + A +    + ++F  
Sbjct: 121  GRAEFEPGWLGEPGEEGLPLATGLIALSGAMGGDVGQALANGNVEAARRAAEHWARVFPQ 180

Query: 181  RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            R Y+ LQR           Q VQLA + +LP+VAT+   F++ +D+ AH+  + +A   +
Sbjct: 181  RYYIELQRAGQPGTDAYVPQAVQLAASMQLPVVATHPVQFMTPDDFTAHEARVCIAEGEL 240

Query: 240  VSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R R  T D Y K + EM ++F+D+P AL+N+VEIA+RC+  L++  P LP F   
Sbjct: 241  LANPRRTRKFTTDQYFKTQDEMTALFADIPSALQNSVEIAKRCNLTLELGKPRLPLFPTP 300

Query: 299  ECDDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +   +    ++ L   A  GLE R+         +     +Y  RL+FE   I +M F G
Sbjct: 301  DGMSL----DDYLVFMAKEGLEKRMLVLFPDEAERESKRAEYYARLEFETGTIIKMGFPG 356

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM
Sbjct: 357  YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPERVSM 416

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y  VD +
Sbjct: 417  PDFDIDFCQHGRDRVITYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYGFVDGV 476

Query: 476  CKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP  P   V+L+    ++    E    +  V +LLE++Q++EG+ R+   HA G++I
Sbjct: 477  AKLIPFKPGKLVTLEEAKKEEPALAERERTEEEVRQLLELAQRVEGMTRNVGMHAGGVLI 536

Query: 535  GDRPLSQLVPMYRDVRSDL--PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
                L+   P+Y      +   V+Q++   +E AGL+KFDFLGL TLT+L  +  ++ + 
Sbjct: 537  APGRLTDFCPLYTQGTDGMSGVVSQYDKDDVEAAGLVKFDFLGLTTLTILDWAERYIRRL 596

Query: 592  --RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                   + S IP DD   + +L +  T+ +FQLES GM+  L+  +PD  EDIIALV+L
Sbjct: 597  DPSKADWNCSQIPLDDSPAFDILKSANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVAL 656

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            YRPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  
Sbjct: 657  YRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGG 716

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM K ++ F  GA KNG++   A +IF+L+ KFA YGFNKSHAAAY
Sbjct: 717  ADLLRRAMGKKKPEEMAKHRDMFREGADKNGLTAQQADDIFDLMEKFAGYGFNKSHAAAY 776

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A+++Y TAW+K H+P EF+AA+M+L MD+ +K+K   +D R   I+++PP VN     F 
Sbjct: 777  ALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYEDCRLNKIEVLPPDVNASEYRFA 836

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              D   I Y L  IKG G      I+ A  ++PFD L DFC RVD +++NRR +E+L+ A
Sbjct: 837  PTDAKTIRYGLGGIKGSGQGAIEDILRAREERPFDDLFDFCERVDRRQVNRRTIEALIRA 896

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVEN 947
            GA D    +R QLL S+    + A   +K  +    ++F   +    S +  L       
Sbjct: 897  GAFDSLNDNRAQLLASVSIAMEAAD--QKAESANQVSLFDLMDDAGASHRPELVDEPRWT 954

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------GNNIR---LA 998
                 + E++ LG+YFSGH  D  +  +R+            ++      G ++R   +A
Sbjct: 955  PKRTLQEEKQALGYYFSGHLFDASRDEVRRFVKGTLAALEKEVQGNGGGYGRDVRGKVIA 1014

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++   + + T++G  I  +   +   + E   F
Sbjct: 1015 GVITGIRTQMTQRGKLIIVL-LDDGTAQIEMTVF 1047


>gi|154491985|ref|ZP_02031611.1| hypothetical protein PARMER_01616 [Parabacteroides merdae ATCC 43184]
 gi|154088226|gb|EDN87271.1| hypothetical protein PARMER_01616 [Parabacteroides merdae ATCC 43184]
          Length = 1266

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1146 (32%), Positives = 575/1146 (50%), Gaps = 134/1146 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-ACAAG--- 66
            F+HL VH+ YSLL+G  S++ ++DK   D  PAIA+TD   +F   EF  K +   G   
Sbjct: 4    FIHLHVHTQYSLLDGQASIDALIDKAQKDGMPAIAVTDHGVMFGIKEFFNKVSKKNGKPL 63

Query: 67   -----------------------------------------IQPIIGCQLDIDMQDNLKM 85
                                                      +PI GC+           
Sbjct: 64   GAIKDYEKELKELKSKTELTAEEQARLEEIPAKIEEEKKKIFKPIFGCECYCARNGRHSK 123

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
                     +   +++L     GY+ LI++VS  +  +      RI    L++   E LI
Sbjct: 124  LAS--QNDRSGWHLIVLAKNLNGYKNLIKMVSLSWT-EGFYGRPRIDKELLEKYH-EDLI 179

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR--------- 196
            + +    G I +         AE+ +L FK LFG+  Y+ +QRH  +D            
Sbjct: 180  ICSACIGGEIPQHILNGRMDKAEESVLWFKNLFGEDYYLEIQRHETHDPNAAQDVYPHQV 239

Query: 197  --ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                 +++LA  H + ++ATN+  F++ ED EAHD L+ ++    +   +R R T   ++
Sbjct: 240  TANKAILELARKHNIKVIATNDVHFVNAEDAEAHDRLICLSTGKDLDDPNRMRYTKQEWM 299

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE-------- 306
            K  +EM +IFSD+PEAL NT+EIA +  F    H PI+P F   E    ++E        
Sbjct: 300  KTTAEMNTIFSDIPEALSNTLEIADKVEFYSIDHGPIMPTFAIPEDFGTEEEYRQKFTEQ 359

Query: 307  ---------------------------------------EENELRNKAVAGLEVRLAQGA 327
                                                   E + L+     G ++      
Sbjct: 360  DLFDEFTRDENGNVVLSEEAAHDKIKKLGGYEKLYRIKLEADYLKKITYDGAKICYGDDL 419

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVT 386
                    + ++RL+FEL+++  M F GYFLIV DFI+ A++   + VGPGRGS AGS  
Sbjct: 420  ------NDEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSAV 473

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AY L IT IDP+++ LLFERFLNPDR+S+PD D DF  D R EV+R+V  KYG ERVA I
Sbjct: 474  AYCLGITRIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAHI 533

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP---NDPAHPVSLQAIADDSRFREARL 503
            IT+G++  K+A++DV R  ++P ++ +RL KL+P    D        AI      +EA  
Sbjct: 534  ITYGTMATKSAIKDVARVQKLPLAESNRLAKLVPDKIPDMKKFKLKDAINYVPELKEAAT 593

Query: 504  -ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQF 558
              DP     L+ +Q LEG  R+   HA G++IG   +S +VP+     +D   ++ VTQ+
Sbjct: 594  GNDPLARDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQY 653

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGT 617
                IE+ GLIK DFLGLKTL++++++++ +        D+  I  +D  TY L     T
Sbjct: 654  EGSVIEETGLIKMDFLGLKTLSIIKEAIENIRLTTGHDLDIDHISLEDPATYKLYCDGKT 713

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
             G FQ ES+GM++ L+ +QP   ED+IA+ +LYRPGP+D I  +  RK GKE+I    P+
Sbjct: 714  TGTFQFESAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIPV 773

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+ E+M+  K +F++G  
Sbjct: 774  MERYLKDTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGGK 833

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
             NG  +     I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA ++  + 
Sbjct: 834  TNGYKEETLQKIWSDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPSEYMAAVLSRSLS 893

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIM-E 855
            N+  I KF  + +   IQ++ P VN   + F V  N+ I + L A+KGVG    ++I+ E
Sbjct: 894  NIVDITKFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGEAAVQNIIEE 953

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNI 908
               + P+  + DF  RV+    N++ +ESL  AGA D FG  R Q           L+ +
Sbjct: 954  RRKNGPYKDIFDFVERVNLTACNKKNIESLALAGAFDNFGIQREQFFAETGKGEIFLETL 1013

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +Y    + +++    ++F  +      K  + K    +   R   E+ ++G Y S HPL
Sbjct: 1014 VRYGNKFQTDKSTATNSLFGGDAFIAIAKPEIPKCERWSDLERLNKEKELVGIYLSAHPL 1073

Query: 969  DVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            D Y+ IL  +   G  E        G ++    +V   ++  T+KG+  G +   +    
Sbjct: 1074 DEYRIILTYVCNTGMAEINDKENLVGKDLLFGGIVTDFREGMTKKGNPYGIIKIEDFTGS 1133

Query: 1027 YEANFF 1032
             E   F
Sbjct: 1134 GEIALF 1139


>gi|326801307|ref|YP_004319126.1| DNA polymerase III subunit alpha [Sphingobacterium sp. 21]
 gi|326552071|gb|ADZ80456.1| DNA polymerase III, alpha subunit [Sphingobacterium sp. 21]
          Length = 1493

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/1117 (31%), Positives = 560/1117 (50%), Gaps = 109/1117 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------SQKAC 63
             +VHL  H+ +S+L+  +S+ +++   A  + PA+AITD  N+  A  F        KA 
Sbjct: 259  DYVHLHNHTQFSILQSTISVADLVKAAAKHRMPAVAITDHANMMGAFHFVSNVLNHNKAA 318

Query: 64   AAG---------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
             A                I+PI+GC+  +         +  KT       IV+L     G
Sbjct: 319  EAKNKTAVENGEEPSEVIIKPIVGCEFFVCDN------HADKTRKDNGYQIVMLAKNKAG 372

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
            Y  L ++ S  Y  D      RI    +++   E +I+L+G   G I           AE
Sbjct: 373  YHNLAKMSSLAYT-DGFYYVPRIDRKIIEQY-KENIIVLSGNLYGEIPNKLLNMGENQAE 430

Query: 169  KRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            + L+ +K+ FG+  Y+ L RH   D  R  + +V+LA  H + L+ATNN+ ++++ED  +
Sbjct: 431  EALIWWKETFGEDFYIELMRHGQEDENRINASLVELARKHGVKLIATNNTYYINKEDAHS 490

Query: 228  HDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            HD+L+ V  +  ++                ++Y K+  EM  +F+D+PEA+ N  EI  +
Sbjct: 491  HDILLCVRDAEKLATPKGRGRGFRYGLPNEEYYFKSGEEMKKLFTDIPEAIANIQEIVDK 550

Query: 281  CSFILQVHAPILPRFIEK--------ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
                      +LP+F           + D  ++ E   LR+    G   R ++       
Sbjct: 551  VEVYSLYRNVLLPKFDIPEEFQVTEDQLDGGKRGENKYLRHLTYVGAAKRYSE------- 603

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
               + R+RLDFEL  I +  + GYFLIV DFI  A++  + VGPGRGS AGS  AY L I
Sbjct: 604  ITPEIRERLDFELQTIEKTGYPGYFLIVQDFIAAAREIGVSVGPGRGSAAGSAVAYCLGI 663

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T+IDP+ + LLFERFLNPDR+SMPD DIDF  + R  V+ YV NKYG  +VAQIIT+G++
Sbjct: 664  TNIDPIAYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGANQVAQIITYGTM 723

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA------------IADDSRFRE 500
             AK+++RD  R L +P  + D++ KL+PN   + +                +        
Sbjct: 724  AAKSSIRDTARVLDLPLFEADKIAKLVPNLKLNKLFNMDAQALKSALRTEELESVRELIN 783

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
                +      +  ++ LEG  R+   HA G++I    ++  VP+     S+L VTQF+ 
Sbjct: 784  LANGNDLGAETIRQAKALEGSVRNTGIHACGVIITPDDITNFVPVSTAKDSELYVTQFDN 843

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLG 619
              +E AGL+K DFLGLKTLTL++ ++  +        +    P DD +TY L     T+G
Sbjct: 844  SVVESAGLLKMDFLGLKTLTLIKDTVSLVKHTKGIELNPDFFPIDDVKTYELFQRGETVG 903

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            IFQ ES GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RKNG+E I       +
Sbjct: 904  IFQYESPGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFIRRKNGEEPITYDLEACE 963

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
              LKET G+ +YQEQVM ++Q L+G++  EADVLR+AMGKK ++ +DK K +F+  A++ 
Sbjct: 964  EYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQRDVLDKMKPKFVQQAAEK 1023

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G  + +   I++    FA Y FNKSH+  YA ++YQTA++K HYP E++AA ++  M+++
Sbjct: 1024 GHDEKVLEKIWKDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEYMAAVLSNNMNDI 1083

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASA 858
            ++I  F ++ ++  + ++ P VN     F V D   I + + A+KGVG      I+    
Sbjct: 1084 KQISFFMEECKRMGLTVLGPDVNESFYKFTVNDQGAIRFGIGAVKGVGAGAVDTIVSNRD 1143

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS--------LDNIQK 910
            +  + S+ DF  R + + +N++V ESLV++GA DCFG +R Q            ++ + K
Sbjct: 1144 EGKYLSIADFARRSNPRTINKKVYESLVYSGAFDCFGINRAQFFHVPEGLSQNGIERLIK 1203

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            Y    + N+ N   ++F         + +L          +   E+ V+  Y +GHP+D 
Sbjct: 1204 YTNDYQYNKNNAAMSLFGGTSDADIPEPSLPPCPEWGLMEKLRYEKNVVSMYITGHPMDD 1263

Query: 971  YKPILRKMGIKGYEESV-----------------------------------ATIRGNNI 995
            Y+  L         +                                     A I+  ++
Sbjct: 1264 YRLELEYFCQHKVSQLHLIDKMKAGAGKDADNGQDAGLESPEEGVEDVKTEFAKIKNKDL 1323

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +  MV +     T+ G   G +TF + +  YE   F
Sbjct: 1324 VVGGMVTAVYHGMTKTGKPYGRMTFEDYSDSYEMALF 1360


>gi|257092573|ref|YP_003166214.1| DNA polymerase III subunit alpha [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
 gi|257045097|gb|ACV34285.1| DNA polymerase III, alpha subunit [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
          Length = 1156

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/1043 (38%), Positives = 598/1043 (57%), Gaps = 36/1043 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++P F+HL++HS YS+ +G + L++ + + A    PA+A++D  N+F  ++F   A +
Sbjct: 1    MLEAP-FIHLRLHSEYSITDGIVRLDDAVARAAGYGMPALALSDLANVFGLVKFYSSARS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI+G  + I    +                ++LL  +  GY +L EL+SR YL  +
Sbjct: 60   KGIKPILGSDVCIANDGDPDRP----------YRLLLLCRSRPGYLQLCELLSRAYLAPR 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I    L+E+G +GLI L+G ++G +  A    + ++A  R   ++K F    Y+
Sbjct: 110  VRGRAEITRRMLEEVGVDGLIALSGAAAGDVGEALLQGNQELAANRAARWEKTFPGAFYL 169

Query: 185  NLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR+    +    +    LA    LPLVAT+   FL  +D++AH+  + +A   ++   
Sbjct: 170  EVQRYGQAQQEALVAATADLAGELGLPLVATHPIQFLERDDFKAHEARVCIAEGYMLGDA 229

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  T + Y K+  EM+++F DLPEAL N+VEIA+RC+  + +    LP F       
Sbjct: 230  RRPRLHTEEQYFKSADEMLALFGDLPEALANSVEIAKRCNLQITLGKSYLPDFPTPAGV- 288

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLI 359
                 ++ LR +AVAGLE+RL Q          +   Y  RL  E + I +M F GYFLI
Sbjct: 289  ---TLDDFLRQQAVAGLEIRLQQLFPDPDVRTAERAPYDARLQLETDTIVQMGFPGYFLI 345

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N+ PVGPGRGSGAGSV AYAL ITD+DPLR++LLFERFLNP+R+SMPDFD
Sbjct: 346  VADFINWAKHNSCPVGPGRGSGAGSVVAYALGITDLDPLRYALLFERFLNPERVSMPDFD 405

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQD R  VI YV+ KYG   V+QI+TFG++ +KA +RDVGR L +PY+  D+L KLI
Sbjct: 406  IDFCQDNRWRVIEYVRQKYGAAAVSQIVTFGTMSSKAVIRDVGRVLDLPYNFCDQLSKLI 465

Query: 480  PNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            P +   P+S  +AIA + + +     +  V  L  ++ +LE L R+   HA G++I    
Sbjct: 466  PVETNKPLSLAKAIAAEPQLQARIDDEEEVRDLFALAARLEDLTRNVGMHAGGVLIAPGK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            L+   P+Y        V+QF+   +EK GL+KFDFLGL+ LT+++ +L ++ Q  GV+ D
Sbjct: 526  LTDFCPVY-SADGGSVVSQFDKDDVEKVGLVKFDFLGLRNLTIIELALKYVEQLSGVRPD 584

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ + FDD + Y +L    T  IFQ+ES GM++ +  + PD  EDIIA+++LYRPGP+ +
Sbjct: 585  LATMAFDDPQAYQILKDGNTTAIFQVESEGMKKLVRKLAPDRFEDIIAVLALYRPGPLGS 644

Query: 658  IVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V +     K  +KI      +   L+ T GVI+YQEQVMQIAQ++ GY+L  AD+LRR
Sbjct: 645  GMVDDFILRKKGQQKIEYYIDDLKACLEPTYGVIVYQEQVMQIAQIIGGYTLGAADLLRR 704

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM   ++    GA K G  + +A+ +F+L+ KFA+YGFNKSH AAYAV++Y 
Sbjct: 705  AMGKKKAEEMALHRDLMREGARKKGYDEKLAMQLFDLMEKFAEYGFNKSHTAAYAVVTYH 764

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NR 834
            TAW+K H+   F+AA+++ +MD  + +K F  DA    ++I+ P VN     F   D + 
Sbjct: 765  TAWLKAHHCAAFMAATLSSDMDVTDTVKIFHDDAINNGLRILGPDVNASEYRFMPVDRST 824

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            + Y L A+KG G      I++   A   F  L DFC RVD + +NRR +E+L+ AGA D 
Sbjct: 825  VRYGLGAVKGTGEQAVNAILKTRSAAGAFRDLFDFCRRVDKRLVNRRTIEALIRAGAFDS 884

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK----ITLEKFSVENSS 949
                R +LL S+    + A+  E+N      ++F   +    +         + +  +  
Sbjct: 885  LDSHRARLLASVGIAMEAAEQAERNAM--QVSLFDIFEAGGEEDREHGPQYVEVARWSER 942

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
             +   E+  LGFYFSGHP    +  + +          A        LA +VV  + K T
Sbjct: 943  QKLNEEKLALGFYFSGHPFHSVQAEVSRFVRTRLAALEARKEVQ--WLAGLVVGVRSKLT 1000

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
             +G  + +V   + +   E + F
Sbjct: 1001 ARGK-MVFVQLDDGSTSLEVSVF 1022


>gi|89890044|ref|ZP_01201555.1| DNA polymerase III [Flavobacteria bacterium BBFL7]
 gi|89518317|gb|EAS20973.1| DNA  polymerase III [Flavobacteria bacterium BBFL7]
          Length = 1450

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/1078 (31%), Positives = 531/1078 (49%), Gaps = 71/1078 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            F HL  HS +S+L+   S+ +++   A +   A+A+TD  N+  A  F +   A      
Sbjct: 257  FAHLHSHSQFSILQSTASVQDLVKAAAVNDMSAVAMTDHANMMGAFHFVKAVKAHNASLV 316

Query: 67   -----------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
                       ++P+IGC+  +    N       K+       IVLL     GY  + ++
Sbjct: 317  NDDDNELQKKPLKPVIGCEFFVCEDMN------DKSHKDNGYQIVLLAKNKNGYLNIAKM 370

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S+ Y +D      RI    +QE   E +I+LTG   G +           AE+ LL +K
Sbjct: 371  SSKAY-VDGFYYVPRIDKKLIQEF-KEDVIVLTGNMYGEVPSKILNIGENQAEEALLWWK 428

Query: 176  KLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            + FGD LYV + RH   D  R    ++ L+  H + +VATNN+ ++ +ED  AHD+L+ V
Sbjct: 429  EEFGDDLYVEIMRHGQEDEDRANEVLISLSRKHNVKMVATNNTYYIHKEDANAHDILLCV 488

Query: 235  AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                  +          + L N+       +++    ++  E     S +L    P    
Sbjct: 489  KDGEKQATPIGRGRGYRYGLPNQEYYYKSATEMKLLFKDLPEAILNISEVLDKIEPFELA 548

Query: 295  FIE---------------KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
                               E D+ ++ E   LR+    G +       I  G    +  +
Sbjct: 549  RDVLLPKFDIPEQFLDAQDEHDNEKRGENAYLRHLTYEGAK-------IRYGEITPEIEE 601

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RLDFEL  I +  + GYFLI  DFI+ A+  ++ VGPGRGS AGSV AY L IT++DP+ 
Sbjct: 602  RLDFELETIRKTGYPGYFLITWDFIKAARDMDVAVGPGRGSAAGSVVAYCLWITNVDPIH 661

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            + LLFERFLNPDR+SMPD DIDF  + R +V+ YV  KYG  +VAQIIT+G++ AK+++R
Sbjct: 662  YDLLFERFLNPDRVSMPDIDIDFDDENRYKVMDYVIEKYGASQVAQIITYGTMAAKSSIR 721

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPA-------------HPVSLQAIADDSRFREARLADP 506
            D  RAL +P ++ D + KLIP+                     +        R       
Sbjct: 722  DTARALDLPLNEADHIAKLIPDFSKLKKIFALEDNEVRSKFRGEDADMVEELRGIAAGSD 781

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
                 L  ++ LEG  R+   HA G++I   PL+  VP+     SDL VTQF+ + +E A
Sbjct: 782  LAAETLRQARILEGSVRNTGVHACGVIITPAPLTNFVPVATAKNSDLYVTQFDNEVVESA 841

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GL+K DFLGLKTL+ ++ ++  + +R     D+  IP DD +TY L     T+GIFQ ES
Sbjct: 842  GLLKMDFLGLKTLSQIKDTVAIIKERHHIDLDIESIPLDDAKTYELFQEGKTVGIFQYES 901

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
            +GM++ +  ++P    D+IA+ +LYRPGP++ I  + +RK+G ++I      ++  L ET
Sbjct: 902  AGMQKYMRDLKPTQFADLIAMNALYRPGPLEYIPDFIDRKHGVKEISYDLDGMEEYLSET 961

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+ +YQEQVM ++Q L+ +S  EADVLR+AMGKK    + K K +F+     NG  + I
Sbjct: 962  YGITVYQEQVMLLSQKLANFSKGEADVLRKAMGKKQMATLQKMKPKFLDNGESNGHDREI 1021

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               +++    FA Y FNKSH+  YA I YQTA++K +YP EF+AA+++  M+ ++ + KF
Sbjct: 1022 LEKVWKDWEAFASYAFNKSHSTCYAWIGYQTAYLKANYPAEFMAATLSNNMNQIKDVTKF 1081

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
              + +   + ++ P VN     F V     + + + A+KG+G      I+E   D P+ S
Sbjct: 1082 MDECKHMGLPVLGPDVNESNYKFTVNKHGAVRFGMGAVKGLGHGAVMTIIENRKDGPYKS 1141

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGY-SRMQLLQS-------LDNIQKYAQWVE 916
            + D   R+D +  N++  E+L  +G  D  G  +R Q           L+ + KYAQ  +
Sbjct: 1142 IFDMAKRIDLRAANKKSFEALALSGGFDGLGGENRAQYFHQSDNGQIFLEQVVKYAQKYQ 1201

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
            +N  +   ++F         +  L       +  + + E+ V+G Y SGHPLD YK  + 
Sbjct: 1202 ENENSAQVSLFGEASDVQIPEPELPICEDWGTMEKLKREKEVVGIYISGHPLDDYKKEME 1261

Query: 977  KMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 G             ++    ++   Q + T+     G  T  +    +E   F
Sbjct: 1262 FFCNTGLSSLKDLHGLVNRDLTFCGVISDVQHRITKTNKGWGMFTVEDYEDSFEFRLF 1319


>gi|302877644|ref|YP_003846208.1| DNA polymerase III, alpha subunit [Gallionella capsiferriformans
            ES-2]
 gi|302580433|gb|ADL54444.1| DNA polymerase III, alpha subunit [Gallionella capsiferriformans
            ES-2]
          Length = 1204

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1094 (36%), Positives = 589/1094 (53%), Gaps = 81/1094 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  SP FVHL++HS YS+ +G   ++  +D   AD  PA+A+TD +N    ++F +K   
Sbjct: 1    MP-SPVFVHLRLHSEYSITDGMARIDEAVDAAIADGMPALALTDLSNFSGLVKFYKKTRG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++P+ G  + I  +                  ++LL  ++EGY RL  L+SR YL +Q
Sbjct: 60   KGLKPVAGVDVFITNE----------ADRDRPYRLLLLCQSSEGYLRLCRLLSRAYLSNQ 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             ++   +   W ++ GTEGLI L+G   G +  A    +   A +    +  LF DR Y+
Sbjct: 110  YRERAELRREWFKDEGTEGLIALSGAHLGDVGCALMSGNVAEARRYAQGWAALFEDRYYI 169

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR    D          LA   +LP+VAT+   FL+  D++AH+  + +A   V++ K
Sbjct: 170  EVQRAGFADEAAYVDAATALAAGLDLPVVATHPVQFLTSADFKAHEARVCIAEGYVLNDK 229

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R +  T   Y K ++EM  +F+DLPEAL+N+VEIARRC+  L +  P LP F     + 
Sbjct: 230  RREKAFTAQQYFKTQAEMSELFADLPEALQNSVEIARRCNLTLVLGKPRLPDFPTPSGES 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +     +E        +       A       Q Y +RL FE+N I +M F GYFLIVAD
Sbjct: 290  LDDFMLSESERGLADRMAFLYPDEAERAEKFPQ-YHERLLFEINTIIKMGFPGYFLIVAD 348

Query: 363  FIQWAK-------KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            FI+WAK        N +PVGPGRGSGAGS+ AY L ITD+DPLR+ LLFERFLNP+R+SM
Sbjct: 349  FIRWAKAYRSDAFPNGVPVGPGRGSGAGSLVAYCLLITDLDPLRYELLFERFLNPERVSM 408

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFD+DFCQD R+ VI YV+ KYG   V+QI TFG++ +KA +RDVGR ++ PY   DRL
Sbjct: 409  PDFDVDFCQDGRELVIDYVKQKYGAACVSQIATFGTMASKAVIRDVGRVMEFPYGLCDRL 468

Query: 476  CKLIPNDPAHPVSLQAI-ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             K IP +   PVSLQ     +        ++  V  LLE++ +LE L R+   HA G+VI
Sbjct: 469  SKAIPLEGVKPVSLQKAREMEPEINAIAESEEGVPELLELAMRLEDLTRNVGMHAGGVVI 528

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA---- 590
                L+   P+Y        V+QF+   +E  GL+KFDFLGL+TLT++  ++  +     
Sbjct: 529  APGKLTDFCPLYCADGGASVVSQFDKDDVEAIGLVKFDFLGLRTLTIIDWAVRHIHRLQA 588

Query: 591  ------------------------------------QRGVKVDLSLIPFDDHETYHLLTT 614
                                                       +  IP DD  +Y LL  
Sbjct: 589  RDRKGLPRTTNETTTELLREGSRIEDQTQVSTQSSVHNPQLFSIEAIPLDDKPSYDLLKK 648

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIV 672
              T  +FQLES GM+  ++ +QPD  EDI+ALV+L+RPGP+++ +   + +RK+G+    
Sbjct: 649  CNTTAVFQLESRGMKDLIKRLQPDTFEDIVALVALFRPGPLESGMVDDFVDRKHGRATAD 708

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
              HP ++  LK T GVI+YQEQVMQI+Q++ GY+L  AD+LRRAMGKK   EM +Q++ F
Sbjct: 709  YFHPELEASLKPTYGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKDPAEMARQRDIF 768

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            +SGA    I K +A  +F+L+  FA YGFNKSH+AAYA+++YQTA++K H+P  F+AA++
Sbjct: 769  VSGALNREIDKDLATRLFDLMEMFAGYGFNKSHSAAYALVAYQTAYLKAHHPAAFMAATL 828

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTAR 851
            + ++DN EK++ F  D  Q  I I+ P VN+    F    +  I Y L AIKG G     
Sbjct: 829  SGDLDNTEKVRTFYADTLQQGITILLPDVNSSGYAFSPTDEKTISYGLGAIKGTGEAAIA 888

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
             I++A A  PF  L DFC RVD + +NRR +E+L+ AGA D     R  L+ S+D     
Sbjct: 889  SIVKARATGPFKDLFDFCRRVDKRAVNRRTIETLIRAGAFDSINDHRAALMASVDAALAS 948

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
            A   ++ R+   +++F  +                +   +   E+  LG Y  GHP   Y
Sbjct: 949  AD--QQARSINQDSLFGEDDADAVLIEQKSDVPRWSLREQLAFEKVSLGIYLGGHPYQEY 1006

Query: 972  KPILRKMGIKGYEESVAT-------------IRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +  L         +                  RG  +RLA +V   + ++TR+G R+  +
Sbjct: 1007 EKELTNFIKVRLGDLTPAFLGKNSGSGGYVSRRGVQVRLAGIVSGLRLQQTRRG-RMAVI 1065

Query: 1019 TFSEPAKEYEANFF 1032
            T  + + + E   F
Sbjct: 1066 TLDDGSAQIELTVF 1079


>gi|303237320|ref|ZP_07323890.1| DNA polymerase III, alpha subunit [Prevotella disiens FB035-09AN]
 gi|302482707|gb|EFL45732.1| DNA polymerase III, alpha subunit [Prevotella disiens FB035-09AN]
          Length = 1238

 Score =  723 bits (1866), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1114 (31%), Positives = 540/1114 (48%), Gaps = 95/1114 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62
             ++HL VH+ YS+L+G   +  ++DK   +    +AITD   +F   EFS          
Sbjct: 3    DYIHLHVHTHYSILDGQSKVPYLVDKAIKNGMKGMAITDHGVMFGIKEFSDYCASINKQR 62

Query: 63   CAAG---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
               G    +PI GC++ +  +       +      +   +++L     GY+ LI+LVSR 
Sbjct: 63   KKNGEEPFKPIFGCEMYVARRRKEDKVKE--MHDNSGYHLIVLAKNYTGYKNLIKLVSRS 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            + +D      R     L++   EGLI+ T   +G + R       + A++ +  +KK+FG
Sbjct: 121  W-VDGYYYRPRTDREDLEKYH-EGLIVSTACLAGEVPRNIMRGDIEGAKEAVQWYKKVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     ++QL     +  + TN+  F  +E  E
Sbjct: 179  DDFYLELQRHEVKDPTLKANREAFPLQQKVNHVLLQLGKEFGVKCICTNDCHFEDKETAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++    ++   R R +   + K R EM  +F DLPE L NT+EI  +  F   
Sbjct: 239  AHDHLLCLSTQEDLNSPTRMRYSKQEWFKTREEMNEVFQDLPEVLSNTIEILEKVEFYSI 298

Query: 287  VHAPILPRFIEKECDDIQKE--------------------------EENELRNKAVAGLE 320
             + PI+P F   E    ++E                          EE E   K + G E
Sbjct: 299  DNGPIMPFFPIPENFGTEEEWRKKFTEQQLYDEFTTDEHGENQLSPEEGEAVIKRLGGYE 358

Query: 321  VRLAQGAIAK---------------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    A                     D  + + FEL+V+  M F GYFLIV DFI 
Sbjct: 359  KMYRIKFEADYLAKLAHDGAKKLYGDPIPDDVEKAIIFELHVMKTMGFPGYFLIVQDFIN 418

Query: 366  WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             A+   N+ VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D DF  
Sbjct: 419  AARTELNVMVGPGRGSAAGSVVAYCLGITRIDPLKYDLLFERFLNPDRVNLPDIDTDFDD 478

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D R +V+++V  KYG E  A IIT+ ++  K +++DV R   +P    + LCK IP    
Sbjct: 479  DGRGKVLQWVMEKYGPENCAHIITYSTMATKNSIKDVARVEGLPLDVSNNLCKAIPERLP 538

Query: 485  HPVSLQ---AIADDSRFREA-RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              + +    AIA   R +EA    D      ++ ++ LEG  R    HA G +I   P+S
Sbjct: 539  DGMKMNLKNAIACTPRLQEAEVSEDDRERNTIKYAKMLEGTVRGTGIHACGFIICRNPIS 598

Query: 541  QLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594
            + VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ ++++   + Q    
Sbjct: 599  EWVPVSTATDPDFPDQKVPVTQYDGHVIETTGLIKMDFLGLKTLSEIKEACKVIKQTTGD 658

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             VD+  IP DD  TY L     T+G FQ ES GM++ L  + P   ED+IA+ +LYRPGP
Sbjct: 659  IVDIDNIPIDDELTYQLYQKGQTIGTFQFESPGMQKYLRELHPTVFEDLIAMNALYRPGP 718

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +  RK+    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  E+D LR
Sbjct: 719  MDYIPDFIKRKHDPSLVTYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGESDALR 778

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +AMGKK K  +D+ K +F+    +NG    I   I+    KFA Y FNKSHA  Y+ ++Y
Sbjct: 779  KAMGKKKKAIVDQMKPKFLKQGQENGHDPKILEKIWTDWEKFASYAFNKSHATCYSWVAY 838

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833
            QTA++K HYP EF+AA MT     + +I K  ++ +   I  + P VN   + F V    
Sbjct: 839  QTAYLKAHYPAEFMAALMTRRFSQITEITKLMEECKSLKISTLGPDVNESMMGFGVNKKG 898

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I + L+AIKG+GT  A  I++    + P+ S+ DF  R+D   +NR+  ESL ++G  D
Sbjct: 899  EIRFGLSAIKGMGTGAAIAIVKEREKNGPYKSIYDFAERIDLSNVNRKAFESLAYSGGFD 958

Query: 893  CFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
             F   R             LD + +YAQ  ++ + +   ++F  +      +    K   
Sbjct: 959  SFELQREDYFSVTSKGVMFLDALVRYAQLYQQEKASMQNSLFGGDDEVEIARPVAAKNER 1018

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------EESVATIRGNNIRLAA 999
              S  +   E+ ++G Y S HPLD Y  IL  +            +     +   I    
Sbjct: 1019 WPSIEKLNKERELVGIYLSAHPLDEYSVILNHLCNTHTEEIGRGADLAELSKREEISFGG 1078

Query: 1000 MVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFF 1032
            ++ +  ++ + + G   G+VT  +     E   F
Sbjct: 1079 IITAVNERFSQKTGKPFGFVTIEDFEGSGELALF 1112


>gi|73542219|ref|YP_296739.1| DNA polymerase III subunit alpha [Ralstonia eutropha JMP134]
 gi|72119632|gb|AAZ61895.1| DNA polymerase III, alpha subunit [Ralstonia eutropha JMP134]
          Length = 1175

 Score =  723 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1061 (38%), Positives = 612/1061 (57%), Gaps = 51/1061 (4%)

Query: 5    LEK--SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            + +  +P FVHL+VHS YS+++G + L++ +   A+D   A+A+TD  N F  + F ++A
Sbjct: 1    MSRMSAPRFVHLRVHSEYSVVDGIVRLDDAVKAAASDGMGALALTDLANAFGLIRFYKEA 60

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               G++P++G  + +  +D+                ++LLV    GY  L  L+SR +L 
Sbjct: 61   RGGGVKPVVGADVWLANEDDRDKPA----------RLLLLVQDRVGYLNLCTLLSRAWLT 110

Query: 123  DQGKQSVRICLSWLQEIG------TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            +Q +    I   W +E G        GLI L+G   G +  A    +   A +    +  
Sbjct: 111  NQHRGRAEIEPGWFEEPGEGGQPLATGLIALSGAMGGDVGMALANGNVDAARRAAAHWAA 170

Query: 177  LFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            +F  R Y+ LQR  H G D Y   Q V LA   +LP+VAT+   F++ +D+ AH+  + +
Sbjct: 171  VFPQRFYIELQRAGHPGTDAYV-QQAVHLAAEMQLPVVATHPVQFMTPDDFTAHEARVCI 229

Query: 235  AHSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            A   +++   R  R T D Y K + EM ++F+D+P AL+N VEIARRC+  L++  P LP
Sbjct: 230  AEGELLANPRRTRRFTTDQYFKTQDEMCALFADIPSALQNAVEIARRCNLTLELGKPRLP 289

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
             F   +   +    ++ L   A  GLE RL+        +     +Y  RL+FE   I +
Sbjct: 290  LFPTPDGMSL----DDYLVFMAKDGLEKRLSVLFPNEAEREAKRPEYYARLEFETGTIIK 345

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F GYFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP
Sbjct: 346  MGFPGYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNP 405

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y 
Sbjct: 406  ERVSMPDFDIDFCQHGRDRVITYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYG 465

Query: 471  QVDRLCKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
             VD + KLIP  P   V+++    ++    E    +  V +LLE++Q++EG+ R+   HA
Sbjct: 466  FVDGIAKLIPFKPGKLVTIEEAKKEEPLLTERENNEEEVRQLLELAQRVEGMTRNVGMHA 525

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
             G++I    L+   P+Y     +      V+Q++   +E AGL+KFDFLGL TLT+L  +
Sbjct: 526  GGVLIAPGRLTDFCPLYTQGGQNDGMSGVVSQYDKDDVEAAGLVKFDFLGLTTLTILDWA 585

Query: 586  LDFLAQ---RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
              ++ +        + S IP DD   + +L T  T+ +FQLES GM+  L+  +PD  ED
Sbjct: 586  ERYIRRLDPSKADWNCSHIPLDDGPAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFED 645

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            IIALV+LYRPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++
Sbjct: 646  IIALVALYRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQII 705

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
             GYSL  AD+LRRAMGKK  EEM + +  F  GA KNG++   A +IF+L+ KFA YGFN
Sbjct: 706  GGYSLGGADLLRRAMGKKKPEEMAQHRVMFREGADKNGLNAEQADDIFDLMEKFAGYGFN 765

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            KSHAAAYA+++Y TAW+K H+P EF+AA+M+L MD+ +K+K   +D +   I ++PP VN
Sbjct: 766  KSHAAAYALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYEDCKLNKIAVLPPDVN 825

Query: 823  TPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                 F   D   I Y L  IKG G      I+ A  ++PF  L DFC RVD +++NRR 
Sbjct: 826  ASEYRFAPTDAKTIRYGLGGIKGSGQGAIEDILRAREERPFKDLFDFCERVDRRQVNRRT 885

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITL 940
            +E+L+ AGA D    +R QLL S+    + A   +K  +    ++F   +    + +  L
Sbjct: 886  IEALIRAGAFDSLNNNRAQLLASVSIAMEAAD--QKAESANQVSLFDLMDDAGEAHRPEL 943

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------GNN 994
                        + E++ LG+YFSGH  D  +  +R+            ++      G +
Sbjct: 944  IDEPAWTPKRTLQEEKQALGYYFSGHLFDACRDEVRRFVKSTLAGLEKEVQGNGGGFGRD 1003

Query: 995  IR---LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +R   +A ++   + + T++G  +  V   +     E   F
Sbjct: 1004 VRGKTIAGVIAGVRTQMTQRGK-MIIVQLDDGTGVVEMTVF 1043


>gi|167750256|ref|ZP_02422383.1| hypothetical protein EUBSIR_01230 [Eubacterium siraeum DSM 15702]
 gi|167656818|gb|EDS00948.1| hypothetical protein EUBSIR_01230 [Eubacterium siraeum DSM 15702]
          Length = 1109

 Score =  723 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/997 (35%), Positives = 550/997 (55%), Gaps = 21/997 (2%)

Query: 39   DQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS 98
              Q A+A+TD   ++ +++F  +    GI+ IIGC++ +  +     + +          
Sbjct: 1    MGQTAVALTDHGVMYGSIDFYNECVENGIKAIIGCEVYVAPRTRFDKSTKSDM---KPHH 57

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            +VLL    EGY+ L +LV+  Y  +      R+    L+   ++GLI L+   SG + R 
Sbjct: 58   LVLLCKDNEGYKNLSKLVTLGYT-EGFYNKPRVDRELLRRY-SKGLICLSACISGELART 115

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNS 217
                    A   +  ++++FG+  Y+ LQ H   ++ R    ++++A      LVATN++
Sbjct: 116  LLDGRLADAVTLVKEYREIFGEDYYIELQSHGISEQERILPYLLRVAKDTGTQLVATNDA 175

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
             ++ +ED     VL  +A +T +  K+  +   D +     + +        A +NTV+I
Sbjct: 176  HYVEKEDSYVQRVLTCIATNTTLDDKNSMQFATDEFYLKSEDEMKALGFPQSAYDNTVKI 235

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
            A +C+        ILP F  +  D+     E     +   GL  R            ++ 
Sbjct: 236  AEKCNVSFTFGHTILPFFKAEGYDNN----EIYFNAQVRKGLVKRYGDPV------PKEV 285

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
              R ++E++VI +M F  YFLIVADFI +AK+N I VGPGRGSGAGSV AY L ITDIDP
Sbjct: 286  LDRAEYEMSVIKKMGFIDYFLIVADFIGYAKRNGIAVGPGRGSGAGSVCAYCLGITDIDP 345

Query: 398  LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
            +RF+LLFERFLNP+R++MPDFD+DFC  RR EVI YV  KYG + VAQIITFG++ A+ A
Sbjct: 346  IRFNLLFERFLNPERVTMPDFDVDFCYIRRQEVIDYVVRKYGRDHVAQIITFGTMAARGA 405

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
            +RD GRA+ +PY +VD + KLIP      +    +  +    +   +D  V  L+E ++K
Sbjct: 406  IRDAGRAMGLPYGKVDTVAKLIPMSMHSTIDGA-LKSEKELVKLASSDSEVSLLIETAKK 464

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            +EG+ R+ S HAAGIVI   P++  VP+Y++      +TQ+ M  IE+ GL+K DFLGL+
Sbjct: 465  IEGMARNTSIHAAGIVITRDPVADYVPLYQNS-EGEVMTQYTMTAIERLGLLKMDFLGLR 523

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
             LT++Q     + +     D+  IP +D ETY ++++ GTLG+FQ ES+GM   L  M+P
Sbjct: 524  YLTVIQDCCKLVVKSCPDFDIEKIPENDAETYDMMSSGGTLGVFQFESAGMTSLLSRMKP 583

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
              +ED+ A +SLYRPGP+D+I  Y   +   EKI   HPL+  +L  T G I+YQEQVM 
Sbjct: 584  RSVEDLTAALSLYRPGPMDSIPTYLANRRNPEKIRYKHPLLKGILDVTYGCIVYQEQVMM 643

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            I ++L+GYS   AD++RRAM KK  E M K++  F+ GA  N + + +A  IF+ +  FA
Sbjct: 644  ICRVLAGYSYGRADIVRRAMAKKKPEVMVKERATFVEGAVANNVDRQVAEEIFDDMMSFA 703

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             Y FNKSHAAAY++++Y+TA+++ HY  E++ A +T  +    K  ++  D  Q  ++++
Sbjct: 704  SYAFNKSHAAAYSLLAYRTAYLRCHYYKEYMVALLTSVIGWGGKTAEYIGDLAQHGLKLL 763

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            PP VN     F   ++ I + L AIK VG      I+E     PF SL DFC R+  K +
Sbjct: 764  PPHVNYSETGFSCENDGIRFGLLAIKNVGANMIADIIEERTKHPFKSLFDFCERMSDKNI 823

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            N+R LESL+  GA D  G +R +++ SL+ +       +++      ++   +       
Sbjct: 824  NKRALESLIKCGAFDGLGNNRREMMISLELMLDT--LSQRHDLEGQMSLMGEDDAADEGA 881

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-SVATIRGNNIR 996
              ++     + +     E+ +LG Y SGHP D +  I R+ G +       +     N+R
Sbjct: 882  FQIKPADEYSHAQLLSYEKEMLGIYISGHPADPFYRIARESGYENIGSILESNKDKQNVR 941

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + A++ S +   T+ G  +G++   + + E E   FP
Sbjct: 942  VTALLTSVRNHITKSGKTMGFIVIEDASGEIECLVFP 978


>gi|312196291|ref|YP_004016352.1| DNA polymerase III subunit alpha [Frankia sp. EuI1c]
 gi|311227627|gb|ADP80482.1| DNA polymerase III, alpha subunit [Frankia sp. EuI1c]
          Length = 1178

 Score =  723 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/1065 (33%), Positives = 562/1065 (52%), Gaps = 48/1065 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL VH+ YS+L+GA  L ++  +++  Q PA+AITD   ++ A +F ++A AAG+
Sbjct: 2    SDSFVHLHVHTEYSMLDGAARLKDMFTEVSRQQMPAVAITDHGYMYGAYDFHKQATAAGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +PIIGC+  I  +  L                 +   +   + +    AEG   L  L S
Sbjct: 62   KPIIGCEAYIAPESRLLKQRVRWGEPHQKSDDVSGSGSYTHMTIWARNAEGLHNLFRLNS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
            R  +     +  R+    + E  + GL+  TG  SG +         ++A K   T++++
Sbjct: 122  RASIEGHYIKWPRMDREIISE-HSAGLMATTGCPSGEVQTRLRLGQPELALKAAATYQEI 180

Query: 178  FG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG +  +  +  H    +R     +V +A    +  V TN+S +  E + E H  L+ V 
Sbjct: 181  FGPENYFCEIMDHGIEIERRVRDGLVDIARKLNMRFVVTNDSHYTYESERETHSALLCVQ 240

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
             ++ V+          ++LK+  +M +I  D  +A     +     +  +          
Sbjct: 241  TASTVANPSFQFEGSGYFLKSADQMRAI--DYSDAWREGCDTTLLIAERVDTTGMFPKHN 298

Query: 296  IEK-ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            +         + EE+  R + + G+E R   G        + +R ++++E+ VI +M F 
Sbjct: 299  LMPVYPTPEGETEESFFRAEVLRGMERRFPGGID------EKHRTQVEYEIGVILQMGFP 352

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFL+VADFI WAK N I VGPGRGS AGS+ AYAL ITD+DPL   L+FERFLNP+R+S
Sbjct: 353  SYFLVVADFIMWAKNNGIAVGPGRGSAAGSLIAYALGITDLDPLPHGLIFERFLNPERVS 412

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPD DIDF   RR +VIRYV  K+G +R+AQI+T+G+++AKAA++D  R L  PY+  DR
Sbjct: 413  MPDIDIDFDDRRRADVIRYVTEKWGEDRIAQIVTYGTIKAKAAIKDSARVLGYPYAVGDR 472

Query: 475  LCKLIPND-PAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
            + K +P       +             ++    R    +D  V ++++ ++ LEGL R A
Sbjct: 473  ITKAMPPMVMGKDIPLPGIFDPNHPRFSEAGEIRALYESDADVRKVIDTAKGLEGLIRQA 532

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
              HAAG+++   P+   +P++R     + +TQF+    E  GL+K DFLGL+ LT++  +
Sbjct: 533  GVHAAGVIMSAEPIIDHIPVWRRDADGVIITQFDYPTCENLGLLKMDFLGLRNLTVMDDA 592

Query: 586  LDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            +  +   RG+K+DL  +  DD  TY LL+   TLG+FQL+   +R  L  M+PD  EDI 
Sbjct: 593  VRNVESNRGIKIDLLSLGLDDKTTYELLSRGDTLGVFQLDGGPLRSLLRLMRPDNFEDIS 652

Query: 645  ALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQI 698
            A+++LYRPGP+  ++   Y  RKNG+++I+ IHP     +D +L  T G+I+YQEQVM I
Sbjct: 653  AVIALYRPGPMGANSHTNYALRKNGQQEIIPIHPELGTALDEVLGTTYGLIVYQEQVMAI 712

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ++ GYSL +AD+LRRAMGKK KE +DK+   F +G   NG S      ++++L  F+D
Sbjct: 713  AQVVGGYSLGQADLLRRAMGKKKKEILDKEFAPFSAGMKANGYSDAAIKTLWDILVPFSD 772

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            Y FNK+H+AAY ++SY TA++K +YP E++AA +T   D+ +K   +  + R+  I+++P
Sbjct: 773  YAFNKAHSAAYGLVSYWTAYLKANYPAEYMAALLTSVRDDKDKSAIYLNECRRMGIKVLP 832

Query: 819  PSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKK 876
            P VN    D+   G++ I   LAAI+ VG      I        P+ S  DF  +V++  
Sbjct: 833  PDVNISDADYTAHGESEIRVGLAAIRNVGINVVESITRTRRTKSPYTSFPDFLDKVEAVV 892

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             N+R +ESL+ AGA D FG++R  L++  +        V+K       ++FA        
Sbjct: 893  CNKRTIESLIKAGAFDSFGHTRRGLVEKHEQAVDAVMAVKKKTAEGQFDLFAFGGDDEDG 952

Query: 937  KI-TLEKF-------SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
                              + +V   NE+ +LG Y S HPL   + +L           V 
Sbjct: 953  SPLETPGLGVGEFSEKEWDKAVLLSNEREMLGLYVSDHPLSGVEHVLAAKADTTVANLVD 1012

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               G  + +  ++ S Q+K T++G      T  +     E  FFP
Sbjct: 1013 YPDGAVVTIGGIISSLQRKVTKQGKVWALTTIEDLEGGLEVMFFP 1057


>gi|90415809|ref|ZP_01223742.1| DNA polymerase III, alpha subunit [marine gamma proteobacterium
            HTCC2207]
 gi|90332183|gb|EAS47380.1| DNA polymerase III, alpha subunit [marine gamma proteobacterium
            HTCC2207]
          Length = 1132

 Score =  723 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/1017 (38%), Positives = 581/1017 (57%), Gaps = 39/1017 (3%)

Query: 41   QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
             PA+A+TD NN F+A++F +    +GI+PI+G  L +  +       Q          +V
Sbjct: 1    MPAVALTDFNNFFAAVKFYKATQGSGIKPILGTDLLVLDESGEGSPTQ----------LV 50

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            LLV    GY  L +L+S+ Y   Q +    I  SWL E  ++GLI L+GG SG I  A  
Sbjct: 51   LLVKDQTGYANLTKLISKAYQDGQRQGVPHIKKSWLGEF-SDGLIALSGGRSGEIGVALV 109

Query: 161  FNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
             N    A   L  F  LFGDR Y+ LQR     +       V LA  +  P+VATN+  F
Sbjct: 110  SNRLDDAATALEEFTALFGDRFYLELQRTGRPEEEDYLHAAVDLAARYNCPVVATNDVRF 169

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            +S++++EAH+  + +     +    R  R +   YL++  EMV +FSD+PEALEN+VEIA
Sbjct: 170  ISKDEFEAHEARVCIHEGRALDDPRRERRFSEQQYLRSPEEMVELFSDIPEALENSVEIA 229

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
            RRCS  +++    LP +   E   I +    E +      LEV     A       + Y 
Sbjct: 230  RRCSIDIRLGEYFLPDYPIPEGMTINEFFTLESKKGLQNRLEVLYDTSAPDFPEIQKRYM 289

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RL+FEL +I +M+F GYFLIV DFI WAK N IPVGPGRGSGAGS+ AY+L ITD+DPL
Sbjct: 290  ERLEFELKIIIQMEFPGYFLIVMDFIGWAKTNLIPVGPGRGSGAGSLVAYSLLITDLDPL 349

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
             + LLFERFLNP+R+SMPDFDIDFC + RD VI YV  +YG + V+QI+TFG++ AKA +
Sbjct: 350  EYDLLFERFLNPERVSMPDFDIDFCMEGRDRVIAYVAEQYGRDAVSQIVTFGTMAAKAVV 409

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
            RDV R     Y   D+L KLIP +    +  +A+  +   ++    D     +  ++ +L
Sbjct: 410  RDVARVQGKSYGLADKLSKLIPFEVGMTLE-KAVEQEETLKQFLDEDDEAGEIWGMALQL 468

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EG+ R+   HA G+VI    ++   P+Y D      VTQF+   +E AGL+KFDFLGL+T
Sbjct: 469  EGVARNCGKHAGGVVIAPTLITDFSPIYCDETGAGVVTQFDKNDVEDAGLVKFDFLGLRT 528

Query: 579  LTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            LT++  ++  +      +     ++  IP DD  TY L+    T  +FQLES GM++ ++
Sbjct: 529  LTIIDWAVRMINADRSNIGEEPLEIDKIPLDDQPTYGLMQRAETTAVFQLESRGMKELIK 588

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQ 686
             + PD  EDIIALV+L+RPGP+ + +V +     K             H  + P L+ T 
Sbjct: 589  KLGPDRFEDIIALVALFRPGPLQSGMVDDFINRKKGRAEVSYPHSQYQHECLKPALEPTY 648

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+I+YQEQVMQIAQ + GY+L  AD+LRRAMGKK  +EM KQ+E F+ GA   G +K +A
Sbjct: 649  GIILYQEQVMQIAQEMGGYTLGGADLLRRAMGKKNADEMAKQRELFMDGAIGKGFTKELA 708

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
             NIF+L+ KFA YGFNKSH+AAYA+++YQTAW+K HYP +F+AA+++ +MD  +K+  F 
Sbjct: 709  SNIFDLMEKFAGYGFNKSHSAAYALVAYQTAWLKQHYPAQFMAATISSDMDKTDKVVTFI 768

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDS 864
             + R  N++++PP VN     F V   NR+ Y L AIKG+G     +I+ A     PF  
Sbjct: 769  DECRAMNLELLPPDVNGGQFHFSVDQQNRVIYGLGAIKGLGEGPVSNILAARNEGGPFKD 828

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALD------CFGYSRMQLLQSLDNIQKYAQWVEKN 918
            L DFC+RVD +K+N+R +E+L+ +GA D        GY R  +L ++D   K A+   +N
Sbjct: 829  LFDFCARVDGRKVNKRAIEALIRSGAFDEVGPEGEIGYRRAVMLAAMDQAVKLAEQHARN 888

Query: 919  RTNKHENIFAH---EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
             ++   ++F +   E  +  +  +       +   R   E+  LG Y +GHP+D Y+  L
Sbjct: 889  TSSGMGDLFGNSIVESASDINYTSYGAARSLSGRERLNGERDTLGLYLTGHPIDEYEEEL 948

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +KM      +           ++ M+++ +  K ++G    ++T  + +   E + F
Sbjct: 949  QKMHPNRISKLRPAKV--LATVSGMIIAMRVMKNKRGENFAFITLDDKSGRLELSIF 1003


>gi|320011307|gb|ADW06157.1| DNA polymerase III, alpha subunit [Streptomyces flavogriseus ATCC
            33331]
          Length = 1179

 Score =  723 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/1068 (31%), Positives = 535/1068 (50%), Gaps = 49/1068 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ +         IA+TD  NL  A +F   A  
Sbjct: 1    MSKPP-FTHLHVHTQYSLLDGAARLKDMFEACNDMGMSHIAMTDHGNLHGAYDFFHSAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +  + + G   L +
Sbjct: 60   AGVTPIIGIEAYVAPESRKHKRKVQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFK 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EGLI  TG  SG +           A +    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDY 178

Query: 175  KKLFGD-RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            K +FG+ R ++ L  H    +R     ++++    ++P + TN+S +    +  AHD L+
Sbjct: 179  KDIFGEGRYFLELMDHGIEIERRVRDGLLEIGRKLDIPPLVTNDSHYTYANEATAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             +     +S  DR R     Y    +       D  +A +         +  +       
Sbjct: 239  CIQTGKNLSDPDRFRFDGTGYYLK-TTDEMYGVDSSDAWQEGCANTLLVAQQIDTTGMFE 297

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             R +  + D      E    + +  AG+  R   G        +D +++ ++E+++I +M
Sbjct: 298  KRDLMPKFDIPEGFTEITWFQEEVRAGMGRRYPGGV------PEDRQKQAEYEMDIIIQM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPITHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+ 
Sbjct: 412  RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471

Query: 472  VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DRL K +P D     +             ++    R     +P V ++++ ++ +EGL 
Sbjct: 472  GDRLTKAMPADVLGKGIDLNGITDPKHPRYSEAGEIRGMYENEPDVRKVIDTAKGVEGLV 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ LT++
Sbjct: 532  RQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  +   +GV +++  +P DD +TY LL    TLG+FQ +   MR  L  MQPD  E
Sbjct: 592  DDAIKMVKANKGVDLEMLSLPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQPDNFE 651

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695
            DI A+ +LYRPGP+       Y  RKN +++I  IHP ++  LKE    T G+I+YQEQV
Sbjct: 652  DISAVSALYRPGPMGMNSHTNYAERKNARQEITPIHPELEEPLKEVLGLTYGLIVYQEQV 711

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+++GYSL EAD+LRR MGKK  +E+ K    F +GA KNG S      ++++L  
Sbjct: 712  QKAAQIVAGYSLGEADILRRVMGKKKADELAKNFVLFEAGAKKNGFSDAAIKALWDVLVP 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+  I+
Sbjct: 772  FAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMGIK 831

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            ++PP+VN    +F   GD+ I + L A++ VG+     I+        + +  DF  +V+
Sbjct: 832  VLPPNVNESESNFAAQGDDVILFGLTAVRNVGSNVVDSIIRCRKAKGKYSTFPDFLDKVE 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +   N+R +ESL+ AGA D  G++R  L+   + +      V++       ++F      
Sbjct: 892  AVVCNKRTVESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGGMGDE 951

Query: 934  FSDKI------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
             SD+                 S     E+ +LG Y S HPL   + +L         +  
Sbjct: 952  SSDEPGFGLDVEFSDI-EWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKSDAAISQLT 1010

Query: 988  --ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1011 GGEHADGAIVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|116332230|ref|YP_801948.1| DNA-directed DNA polymerase, alpha subunit [Leptospira borgpetersenii
            serovar Hardjo-bovis JB197]
 gi|116125919|gb|ABJ77190.1| DNA-directed DNA polymerase, alpha subunit [Leptospira borgpetersenii
            serovar Hardjo-bovis JB197]
          Length = 1147

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1012 (35%), Positives = 571/1012 (56%), Gaps = 28/1012 (2%)

Query: 33   LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92
            +  +  +   ++A+TD  N+F A+EF  +A   GI+PIIG +  +   +  + T   K  
Sbjct: 1    MQHVKENGMSSVAMTDHGNMFGAVEFYNEATKQGIKPIIGSEFYVSP-NRKQETEMVKIA 59

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
              +   ++LL    EGY+ LI L S+ Y  +   +  RI    L +    GL+ LT   +
Sbjct: 60   DGSAYHLILLAKNEEGYKNLIRLSSKSYT-EGFYKKARIDYDLLAQ-HNGGLVCLTACLA 117

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRHRGYDRY-RESQVVQLAYTHELP 210
            G ++R         + +      ++F  +  Y+ +Q H   ++     Q+        +P
Sbjct: 118  GEVNRKILEGKIDESFQLAGKLNEIFRKEDFYMEIQNHGIPEQMTVAKQIYDFGKRTGIP 177

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
            LV TN+S FL ++D EA D+L+ +     ++         + Y+K+  EM  +F ++PEA
Sbjct: 178  LVVTNDSHFLKKDDQEAQDILLRIGMQKRITDPMEFGFNGEFYVKSPDEMARVFPEIPEA 237

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
              NT+EI+ +    LQ    +LP F   E  D     ++ L      G+  +        
Sbjct: 238  FYNTLEISNKVDLKLQFGNYLLPEFEVPEGYD----ADSYLEKLIWEGIGRKYPN----- 288

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
               + + + R+ FELN I  MKF+GYFLIV D+I +AK+N IPVGPGRGS AGS+ AYAL
Sbjct: 289  --LSPEIKDRVVFELNTIKNMKFAGYFLIVQDYINYAKRNGIPVGPGRGSAAGSIVAYAL 346

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             IT+++PL+ +LLFERFLNPDR  MPD D DFC +RR+EVI Y++ +YG E+V QIITF 
Sbjct: 347  GITNVEPLQHNLLFERFLNPDRKDMPDIDTDFCVERREEVINYIRRRYGEEKVGQIITFN 406

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            SL AKAAL+DV R L +P+ + + + K  PN     +  +A+   S  +     D    +
Sbjct: 407  SLAAKAALKDVARVLNLPFGEANEMTKAFPNKLGMSI-AEALTTSSELKNFSEKDDINHK 465

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEK 565
            +  I+Q+LEG YR    HAAG+VI   PL ++VP+      + P     VTQ++   +E 
Sbjct: 466  IFAIAQRLEGNYRQPGRHAAGVVISPYPLEEVVPLSTVAEKERPGSRSIVTQYDKNNLES 525

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             GLIK D LGLK LT L  ++  + +R  V++DL  IP++D  TY LL    TLGIFQLE
Sbjct: 526  IGLIKMDILGLKNLTTLDYAIKLIERRRGVRIDLDEIPYNDANTYALLRKANTLGIFQLE 585

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPML 682
            S+G+   +   Q +  ++I+AL++LYRPGP+   +   Y +RK+G++++   HP  +P+L
Sbjct: 586  STGITDLVAKSQVNNFDEIVALIALYRPGPMGEGMLDEYLDRKSGRKQVTYPHPSCEPIL 645

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            KET GV +YQEQVM I++++ G+S+ ++DVLR+AM KK  + M+K K +F+ GA K GI 
Sbjct: 646  KETFGVPVYQEQVMSISRVVGGFSVGDSDVLRKAMAKKKADLMEKLKYQFVEGAVKQGIQ 705

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
            + +A + FE L +F  YGFNKSH+ AYA+I+YQTA++K +Y +E+L A +  +      I
Sbjct: 706  EKVAKDFFEQLERFGGYGFNKSHSVAYAIITYQTAYLKANYTIEYLTALLASDHGKTTDI 765

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEAS-ADK 860
             K+  +AR+  I+I+ P V+     F V D+  I + L+A+KGVG T A  I+EA     
Sbjct: 766  VKYINNAREMGIRILNPDVSESQASFNVIDDATIRFGLSAMKGVGETAANSIIEARDKAG 825

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             F +L+DF   +D++ +N++V E+L+ AGALD FGY+R  L +S+D+I  +AQ  ++   
Sbjct: 826  NFKTLQDFALNIDTRLINKKVFEALIQAGALDSFGYTRKCLFESVDSILTFAQREQERTN 885

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                ++F   + +F+  +  +         +   E+ + G Y SGHPLD Y+  L+ +  
Sbjct: 886  EGQFSLFGVGESSFTLNLPKDAL-EWEIDEKLRREKAIAGLYLSGHPLDKYEKQLKSLRT 944

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               E+      G+ + +A ++ SK  K +++          +   E E   F
Sbjct: 945  IPIEKFDNLKSGSKVEVAGIISSKNIKLSKRNEEFANFKLEDRTGEIECVAF 996


>gi|189485028|ref|YP_001955969.1| DNA polymerase III subunit alpha [uncultured Termite group 1
            bacterium phylotype Rs-D17]
 gi|170286987|dbj|BAG13508.1| DNA polymerase III subunit alpha [uncultured Termite group 1
            bacterium phylotype Rs-D17]
          Length = 1174

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1061 (35%), Positives = 588/1061 (55%), Gaps = 52/1061 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALS-------LNNILDK-IAADQQPAIAITDTNNLFSALEFS 59
            +  FVHL  H+ YSLL+GA            + +      + PA+AITD  N++ A+EF 
Sbjct: 2    AAEFVHLHNHTEYSLLDGACRLIDDKGKPGELFNLIAKEYKMPALAITDHGNMYGAMEFY 61

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFP--TVPSIVLLVSTAEGYQRLIELVS 117
              A  +GI+PIIGC++ +  +      N  +          + LL    EGYQ L+ +VS
Sbjct: 62   LAAKQSGIKPIIGCEIYVAPKSRFDKKNINRITEDNVNYHHLTLLAKDFEGYQNLMRIVS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
              +  +      R+    L++    GLI L+G  +G +  A    + + A+   + ++ +
Sbjct: 122  AGFT-EGFYYKPRVDKEVLKKY-RCGLIALSGCLAGEVASALVKGNKKKAQNAAIEYRDI 179

Query: 178  F-GDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F  D  Y+ +  +     +     +++L+ +  +PLVATN+  FL +ED E HD+L+ + 
Sbjct: 180  FDKDNFYIEIMDNGLETQKKIIPSLIELSKSAAIPLVATNDCHFLKKEDAEVHDILLCIG 239

Query: 236  HSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
               ++++  R    +   Y ++  +M+  FS +PEA++NT+EIA + +  +     +LP+
Sbjct: 240  TGKMLNETKRLHFDSDLFYYRSAEDMIKTFSSVPEAIKNTLEIAEKTNLEINTDKLLLPQ 299

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            F   +     K +   L      GL       A        ++ +RL  EL+VI +M F+
Sbjct: 300  FPIPK---EYKSDSEYLETLCRRGL-------AARYDTIKPEHEERLKHELSVINKMGFA 349

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFLIV+DFI++AK + IPVGPGRGSG+G++ AY L ITDI PL++ LLFERFLNPDR S
Sbjct: 350  SYFLIVSDFIKYAKDHRIPVGPGRGSGSGAMVAYTLGITDICPLKYGLLFERFLNPDRRS 409

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPD DIDF    RDEVI+YV+ KYG E+ AQIITFGS+Q++  ++DV R +    ++ + 
Sbjct: 410  MPDLDIDFADYGRDEVIQYVRRKYGEEKCAQIITFGSMQSRLVIKDVARVMGFTPAESNN 469

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            + KLIP + +     +A+   +   +   AD  + +L+  SQKLEGL RH   HAAG+VI
Sbjct: 470  IAKLIPQNASI---AEALQASTDLSKLVKADEKIAKLIAASQKLEGLKRHTGVHAAGMVI 526

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             ++ ++   P+ +    D+  TQ++   + + GL+K DFLGLKTLT++   + F+ ++  
Sbjct: 527  ANKEITSYSPLAKGS-KDIVTTQYDGGVLPQLGLLKIDFLGLKTLTIIDDCVKFIREKNP 585

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              +L  IP DD +TY LL    T+GIFQLES GMR  ++ ++P  I+DIIAL++LYRPGP
Sbjct: 586  SFNLDNIPLDDKKTYELLGEAKTMGIFQLESIGMRDLIKKLKPSNIDDIIALIALYRPGP 645

Query: 655  IDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            + + +   + NRK+G+ KIV  HPL + +LK+T GVI+YQEQVM+++  L+G++  EAD 
Sbjct: 646  MGSGMLDNFVNRKHGRTKIVYDHPLQESILKDTYGVILYQEQVMKMSVALAGFTPGEADS 705

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LR+AM KKI E ++KQ+E+F+ G  + G++K I+  IF  +  F  YGFNKSH+AAY +I
Sbjct: 706  LRKAMSKKIPEVIEKQREKFVRGTKEKGVNKKISEKIFNNIVAFGGYGFNKSHSAAYGII 765

Query: 773  SYQTAWMKTHYPVEFLAASMTLE-------MDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            SY+TA++K +YP+E++ A    E        +   K+  +  DA  F+I+++PP V    
Sbjct: 766  SYKTAYLKANYPLEYITALCNNEIGRPATKNNEESKLVAYLGDALAFDIKVLPPDVQYSD 825

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADK---PFDSLEDFCSRVDSKKLNRRV 881
              FK  D  I + + A+K VG      I ++   +     F    DF  R+D K +N++ 
Sbjct: 826  GKFKTEDKNIRFGMLAVKNVGKGVTDSIEQSRIENGQLKSFKDWVDFLQRIDLKSINKKA 885

Query: 882  LESLVFAGALDCFGYS----RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            LESL+ AG  D FG      R +L+Q++D+    A  V++ R +    +F + K    D 
Sbjct: 886  LESLIKAGVFDSFGKDKFTIRGRLIQNIDSYADKAAKVKQYRESLQGFLFDNVKTITDDI 945

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL---RKMGIKGYEESVATIRGNN 994
            ++L++            E+ VLGFY SGHPL   K  +       +    +         
Sbjct: 946  LSLQEVKPLEPLEALNFEKEVLGFYISGHPLTHRKKDIIAYSNYRLDKLPQLKENADRKT 1005

Query: 995  IRLAAMVVSKQ--QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +R+A M+VS +     TRK          +      A  FP
Sbjct: 1006 VRIAGMIVSVKKLTSTTRK-EPYARFKIEDLHGNVNALLFP 1045


>gi|302526214|ref|ZP_07278556.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4]
 gi|302435109|gb|EFL06925.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4]
          Length = 1174

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/1066 (31%), Positives = 528/1066 (49%), Gaps = 51/1066 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PSFVHL VH+ YS+L+GA  +  +  + A    PA+ +TD  N++   EF Q +   GI+
Sbjct: 2    PSFVHLHVHTEYSMLDGAAKIGPLFAEAARLGMPAVGMTDHGNMYGGDEFFQTSKKHGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVLLVSTAEGYQR 111
            PIIG +  +  +                           +       + ++   A G + 
Sbjct: 62   PIIGIEAYVAPESRFHKKPVFWGQASQRGSDEFGEGGDVSGGGAYTHMTMVAGNATGLRN 121

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L +L S   +     +  R+    + E   EG+I  TG  SG +         + A +  
Sbjct: 122  LFKLSSLASIQG-YYRKPRMDRELIAE-NAEGIIATTGCPSGEVQTRLRLGQREAAIQAA 179

Query: 172  LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
              +K +FG    Y+ L  H    +R     ++++    +LP +ATN+S +++++  + H 
Sbjct: 180  SDYKDIFGAGNFYLELMDHGLPIERSVREGLLEIGKLLDLPPLATNDSHYVTKDQADTHS 239

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             L+ V     ++   R +   D Y    ++ +  + D          +            
Sbjct: 240  ALLCVQAGKTLNDPTRFKFDGDGYFLKSAQEMREYWDKEVPGAADNTLLIAERVESYEDV 299

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                  +          E   L ++ ++GLE RL  G         +YR+R ++EL VI 
Sbjct: 300  YAHKDRMPVFDVPEGHTEATWLHHEVMSGLEHRLPDGV------PDEYRERAEYELEVIV 353

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
               F GYFLI AD +  A++  I VGPGRGS AGS+ AYAL IT++DP+R  LLFERFLN
Sbjct: 354  EKGFPGYFLITADLMTHAREAGIRVGPGRGSAAGSLVAYALRITNLDPIRHGLLFERFLN 413

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QM 467
            P+R+SMPD D+DF   RR E+IRY   KYG +R+AQ+ITFG+++ KAA++D  R    Q 
Sbjct: 414  PERVSMPDIDMDFDDRRRGEMIRYATEKYGSDRIAQVITFGTIKTKAAIKDSARVHFGQP 473

Query: 468  PYSQVDRLCKLIPNDPAHPV---------SLQAIADDSRFREARLADPSVDRLLEISQKL 518
             Y+  DR+ K +P   A              +  A+ +  R     D     + E ++ L
Sbjct: 474  GYAIADRISKALPPPVAAKDIPLSGIVDAKHERYAEAAEVRALVETDEECKTIFETARGL 533

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R+A  HA  +++   PL   +P++R       +T ++    E  GL+K DFLGL+ 
Sbjct: 534  EGLIRNAGVHACAVIMSSEPLLNAIPLWRRD-DGSIITGWDYPSCEAIGLLKMDFLGLRN 592

Query: 579  LTLLQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  ++D   A RG  +DL  +  DD ET+ LL    +LG+FQL+   MR  L  M+P
Sbjct: 593  LTVIGDAIDNIQANRGEDIDLDRLAIDDPETFALLVRGDSLGVFQLDGGAMRDLLRRMRP 652

Query: 638  DCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIY 691
               EDI+A+ +LYRPGP+       Y +RKN ++ I  IHP ++      L ET G+++Y
Sbjct: 653  TGFEDIVAVNALYRPGPMAMNTHNNYADRKNKRQAIEPIHPELEEPLREILAETHGLVVY 712

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQ+MQIAQ ++GYS+  ADVLRRAMGKK KE ++K+ E F +G   NG S      +++
Sbjct: 713  QEQIMQIAQKVAGYSMGRADVLRRAMGKKKKEVLEKEFEGFRAGMIDNGFSAEAVQALWD 772

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  FA Y FNKSHAA YA++ Y TA++K +Y  E++AA +T   DN +K   +  + R+
Sbjct: 773  TILPFAGYAFNKSHAAGYALVGYWTAYLKANYTAEYMAALLTSVGDNKDKSAIYLSECRR 832

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
              I+++PP VN   + F    N I + L A++ VG      I++   +   + S  DF  
Sbjct: 833  LGIKVLPPDVNESALRFAAVGNDIRFGLGAVRNVGANVVESIIKTREEKGKYSSFTDFLD 892

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            + +    N+RV+ESL+ AGA D  G++R+ ++Q  ++  +    +++       ++F  E
Sbjct: 893  KSELVACNKRVIESLIKAGAFDSMGHTRLSMIQVHEDAVEAVVPLKRQEAMGQFDLFGGE 952

Query: 931  KGTFSDKITLE---KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                +                      E+ +LG Y S HPLD  + +LRK   +     +
Sbjct: 953  SEEPASSPLAHVKFTAEEWPRKQLLAQERDMLGLYVSAHPLDGAEGVLRKHAPRPIAAII 1012

Query: 988  ATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                    + +A ++ S +++  +KG      T  +     E  FF
Sbjct: 1013 DNPPKEGELVVAGLITSLERRVNKKGEPWAICTVEDLDASLEVLFF 1058


>gi|295394749|ref|ZP_06804964.1| DNA-directed DNA polymerase III alpha subunit [Brevibacterium
            mcbrellneri ATCC 49030]
 gi|294972345|gb|EFG48205.1| DNA-directed DNA polymerase III alpha subunit [Brevibacterium
            mcbrellneri ATCC 49030]
          Length = 1178

 Score =  722 bits (1864), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/1064 (33%), Positives = 540/1064 (50%), Gaps = 46/1064 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  FVHL VH+ YS+L+GA  L +++         A+A TD   LF A +F  +A  AGI
Sbjct: 2    ADDFVHLHVHTEYSMLDGAARLGDLMAATNELGMRALATTDHGYLFGAFDFWNQATKAGI 61

Query: 68   QPIIGCQLDIDMQ------------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            +PIIG +  +                +    +   +       + LL     G Q L + 
Sbjct: 62   KPIIGVEAYVTPGTARNDKTVVKWRTDESQRSDDVSGGGRYTHMTLLSRNNRGMQNLFKA 121

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S   L        R+    LQ   + GLI  TG  SG +         + A K    ++
Sbjct: 122  SSLASLDSALGNRPRLDRELLQNY-SNGLIATTGCPSGEVQTRLRLGQYEEARKAAGEYR 180

Query: 176  KLFGDRLYV-NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            ++FG   Y   L  H    +R     +++LA    LPLVATN+  +  E D  AH+ L+A
Sbjct: 181  EIFGADYYFCELMDHGLEIERRVTKDLLRLAKELNLPLVATNDLHYTHESDATAHEALLA 240

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            +   + + +    +             +   +++    +   E       I  +      
Sbjct: 241  LQSGSKLLEPTYEQGGSRFAFSGTGYYLKSPAEMRHLFKELPEACDNTLKIADMCEVSFD 300

Query: 294  ---RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                ++ K      ++E + L  +   GL  R  QG         + R++ D+EL++I +
Sbjct: 301  TSANYMPKFPTPEGEDETSWLIKEVDKGLHYRYPQG------IPDEVRKQADYELDIIIK 354

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F GYFL+VADFI W+K N I VGPGRGSGAGS+ AYA+ ITD+DPL+  L+FERFLNP
Sbjct: 355  MGFPGYFLVVADFINWSKDNGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLIFERFLNP 414

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFD+DF   RR EVI YV  KYG E VA I+T+G+++ K AL+D  R L  P+S
Sbjct: 415  ERVSMPDFDVDFDDRRRSEVIDYVTQKYGSEYVAMIVTYGTIKTKQALKDAARVLGHPFS 474

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSR---------FREARLADPSVDRLLEISQKLEGL 521
              + L K +P             ++           FR     +     + E ++ LEGL
Sbjct: 475  MGEELTKALPPAAMAKDIPLTDIENPEAPRYNEAGDFRNLLATNEQAREVFETARGLEGL 534

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R    HAAG+++   P+  ++P+ R  +    +TQF+    E  GLIK DFLGL+ LT+
Sbjct: 535  KRQWGVHAAGVIMSSEPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKMDFLGLRNLTI 594

Query: 582  LQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +L+     R V++DL  +  DD +TY LL    TLG+FQL+  G++  L  MQPD  
Sbjct: 595  ISDALENIQRNRDVEIDLERLELDDEDTYKLLARGDTLGVFQLDGGGLQGLLRLMQPDNF 654

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQ 694
            EDI A ++LYRPGP+  D+   Y  RKNG ++I  IHP +       L  T G+IIYQEQ
Sbjct: 655  EDISATLALYRPGPMGADSHTNYAKRKNGLQEITPIHPELAEPLKEILDTTYGLIIYQEQ 714

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VM IAQ ++GYSL +AD+LRRAMGKK K E+DKQ+  F  G  + G S+  A  ++++L 
Sbjct: 715  VMAIAQKVAGYSLGQADILRRAMGKKKKAELDKQQVGFFGGMKERGYSEEAAQALWDILL 774

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+DY FNK+H+AAY V+SY TA++K HYP E++AA +T   DN +K+  +  + R+ +I
Sbjct: 775  PFSDYAFNKAHSAAYGVVSYWTAYLKAHYPAEYMAALLTSVGDNKDKLAVYLGECRKMHI 834

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873
             ++PP VN   ++F    N I + + A++ VG      I+E+      F S  DF  +V 
Sbjct: 835  TVLPPDVNESELNFTPVGNDIRFGMGAVRNVGHNVVDGIVESRTEKGAFTSFSDFLDKVP 894

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            S   N+R +ESL+ +GA D  G++R  L++  +        V++       ++FA   G 
Sbjct: 895  SHVCNKRTVESLIKSGAFDSLGHTRRALVEIHEEAVDSVVGVKRQEAAGQFDLFAGLGGD 954

Query: 934  FSD--KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT-- 989
             +    + +      +   +   E+ ++G Y S HPL+  + ++         + ++   
Sbjct: 955  DAASFSVPIPDRVEWDKKEKLAFEREMIGLYVSDHPLNGLEGVIASESDLPLVDLISQGR 1014

Query: 990  IRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
              G+ I +  M+ S  ++ ++  G     VT  +     E  FF
Sbjct: 1015 SEGSTITVCGMITSLVRRVSKNSGRPYAIVTIEDLEASIEVLFF 1058


>gi|302550775|ref|ZP_07303117.1| DNA-directed DNA polymerase subunit III alpha [Streptomyces
            viridochromogenes DSM 40736]
 gi|302468393|gb|EFL31486.1| DNA-directed DNA polymerase subunit III alpha [Streptomyces
            viridochromogenes DSM 40736]
          Length = 1179

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/1067 (31%), Positives = 530/1067 (49%), Gaps = 47/1067 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ +         IA++D  NL  A +F   A  
Sbjct: 1    MSKPP-FTHLHVHTQYSLLDGAARLKDMFNACNEMGMSHIAMSDHGNLHGAYDFFHTAQK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +    + G   L  
Sbjct: 60   AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTMWAVNSTGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EG++  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETIAQW-SEGIVASTGCPSGEVQTRLRLGHFDEALKAAADY 178

Query: 175  KKLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG DR ++ L  H     +R    ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIEIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEASAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             +     +S  DR R     Y    S       D  +A +      R  + ++       
Sbjct: 239  CIQTGKNLSDPDRFRFDGTGYYLK-STDEMYAIDSSDAWQEGCANTRLIAEMVDTTGMFE 297

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             R +  + D      E +  R + + G+  R   G         D  +++++E++ I  M
Sbjct: 298  KRDLMPKFDIPEGYTEVSWFREETLRGMHRRFPDG------IPDDRMKQVEYEMDTIISM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAKK  I VGPGRGS AGS+ AYAL ITD+DP+   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIMWAKKQGIAVGPGRGSAAGSIVAYALGITDLDPIPHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G+++AK A++D  R L  PY+ 
Sbjct: 412  RISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYPYAM 471

Query: 472  VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DRL K +P D     +             ++    R     +P V ++++ ++ +EGL 
Sbjct: 472  GDRLTKAMPADVLGKGINLDGITNPEHPRYSEAGEIRAMYENEPDVKKVIDTAKGVEGLV 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++    ++  VP++      + +TQ++    E  GL+K DFLGL+ LT++
Sbjct: 532  RQMGVHAAGVIMSSETITDHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGLRNLTIM 591

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  +   +G+ +DL  +P DD  T+ LL    TLG+FQ +   MR  L  M+PD  E
Sbjct: 592  DDAVKMVKSNKGIDIDLLSLPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFE 651

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQV 695
            DI A+ +LYRPGP+       Y  RKNG+++I  IHP ++      L  T G+I+YQEQV
Sbjct: 652  DISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLREVLDVTHGLIVYQEQV 711

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+++GYSL EAD+LRR MGKK  EE+ K    F  GA K G S      ++++L  
Sbjct: 712  QKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFVLFQEGARKKGFSDEAIQALWDVLVP 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H+AAY ++SY TA++K ++P E++AA +T   D+ +K   +  + R+  I+
Sbjct: 772  FAGYAFNKAHSAAYGLVSYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNECRRMGIK 831

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            ++PP VN    +F   GD+ I + L+A++ VGT     I+        + S  D+  +V+
Sbjct: 832  VLPPDVNESMSNFAAQGDDVILFGLSAVRNVGTNVVESIIRCRKAKGKYVSFPDYLDKVE 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F      
Sbjct: 892  AVVCNKRTTESLIKAGAFDAMGHTRKGLTAHYEPMIDNVVAVKRKEAEGQFDLFGGMGED 951

Query: 934  FSDKITLE-----KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987
             S +              + +     E+ +LG Y S HPL   + IL      G  +   
Sbjct: 952  ESSEPGFGLDVEFSPDEWDKTYLLAQEREMLGLYVSDHPLFGLEHILSDKADAGISQLTG 1011

Query: 988  -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G+ + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1012 GDYSDGSVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|254360522|ref|ZP_04976671.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica
            PHL213]
 gi|153091062|gb|EDN73067.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica
            PHL213]
          Length = 1142

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/1031 (39%), Positives = 589/1031 (57%), Gaps = 38/1031 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            ++ G   + +++   AA+   A+ +TD  N    ++F  +A  AGI+PIIG  + +  + 
Sbjct: 1    MINGLAKVKSLVKTAAANNMVAMGLTDFINFCGLVKFYGEALGAGIKPIIGADVYVRTES 60

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                             + LL    +GY  + +++S+ Y      +   +   WL E+  
Sbjct: 61   G----------NEDYFELTLLAKNNKGYHNITQILSKAYQQGYV-EFPMVEREWLAEL-N 108

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQV 200
            EG+I+L+GG  G + +A    + Q AE++L  +++ + +  Y+++ R    D  R   Q 
Sbjct: 109  EGIIILSGGRMGDVGKALLKENRQEAEEKLAFYQQYYPNHFYLSVCRTGRADEERYIKQA 168

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+ +  + +PLVA N+ +FL E+D++AH++ +A+  S  +    RP+  +P  Y +   E
Sbjct: 169  VEFSQKNAIPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPKQYFRTEEE 228

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+DLP AL NTVEIA+RCS  +++                +   E+ L  K+  GL
Sbjct: 229  MCKLFADLPSALANTVEIAKRCSVTVRLGEYF-----LPNFPTGELSTEDFLVKKSKEGL 283

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +      Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGP
Sbjct: 284  EERLEFLFPDPEERANKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 343

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D RD VI +V  
Sbjct: 344  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 403

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PYS VDR+ KLIP DP   +  +A A + 
Sbjct: 404  TYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPGMTLE-KAFAAEP 462

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 463  KLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLHPVT 522

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYHL 611
             F+   +E AGL+KFDFLGL+TLT+++ +L+ + +R        + +  IP DD +++ L
Sbjct: 523  HFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINERLAREGKEPIRIETIPLDDKKSFAL 582

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK- 670
            L    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+++ +V N       K 
Sbjct: 583  LLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGKE 642

Query: 671  ------IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                      H  + P+L+ T GVI+YQEQVMQIAQ L+GY+L  AD+LRRAMGKK  EE
Sbjct: 643  EVSYPDPQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEE 702

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M  Q+E F  GA   GI   +A  IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 703  MAAQREVFEKGAEAKGIDGKLAGQIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 762

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA MT EMDN +KI  F  +     + ++PP VN+    F V +   I Y L AIK
Sbjct: 763  AEFMAAVMTSEMDNTDKIVGFYDECMNMGLTVVPPDVNSGKHRFSVNEKGEIVYGLGAIK 822

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+ A   +  F  L D  +RVD KK+NRR  ESL+ +GA D  G  R  L+
Sbjct: 823  GVGEGPIEAILAARQKEGKFKDLFDLTARVDLKKINRRTFESLIMSGAFDKLGPHRAALM 882

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGF 961
            ++L++  K +    K       ++F     T  + +         +  V  + E+  LG 
Sbjct: 883  KNLEDALKASDQHAKMEELGQSDMFGVLTETPEEVQNAYANTPKWSEQVILDGERATLGL 942

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y SGHP+  +   L         E   T RG    ++ +V++ +   T++GSRIG  T  
Sbjct: 943  YLSGHPIGRFLKELSHYAPNRLNELQPTFRGQMTTVSGIVMASRVAVTKRGSRIGIATIE 1002

Query: 1022 EPAKEYEANFF 1032
            + + + +   F
Sbjct: 1003 DRSGKLDITLF 1013


>gi|302533930|ref|ZP_07286272.1| DNA polymerase III subunit alpha [Streptomyces sp. C]
 gi|302442825|gb|EFL14641.1| DNA polymerase III subunit alpha [Streptomyces sp. C]
          Length = 1180

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/1069 (31%), Positives = 535/1069 (50%), Gaps = 50/1069 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+P F HL VH+ YSLL+GA  L ++           IA++D  NL  A +F   A  
Sbjct: 1    MTKTP-FTHLHVHTQYSLLDGAARLKDMFAACNEMGMTHIAMSDHGNLHGAYDFFHSAQK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AGI PIIG +  +  +                    +         +  + A G   L  
Sbjct: 60   AGITPIIGIEAYVAPESRRNKRRIQWGQPHQKRDDVSGSGGYTHKTIWAANATGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y      +  R+    + +  +EGLI  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLTKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAIKAASDY 178

Query: 175  KKLFGD-RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            K +FG+ R ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  KDIFGEGRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEAGAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             +     +S  DR R     Y    S       D  +A +       + +  +       
Sbjct: 239  CIQTGKNLSDPDRFRFDGSGYYLK-STEEMYAIDSSDAWQEGCANTWKVAEQVDTEGMFK 297

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             R +  + D      E    R + + G+  R   G        +D  +++++E++ I  M
Sbjct: 298  FRNLMPKFDIPDGYTEVTWFREETMRGMHRRFPGG------IPEDRMKQVEYEMDTIISM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAK   I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G+++AK A++D  R L  PY+ 
Sbjct: 412  RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYPYAM 471

Query: 472  VDRLCKLIPND---PAHPV------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DRL K +P D      P+      S    ++    R     +P V ++++ ++ +EGL 
Sbjct: 472  GDRLTKAMPADVLGKGIPLSGILDPSHPRYSEAGEIRGMYENEPDVKKVIDTARGVEGLV 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++    ++  VP++      + +TQ++    E  GL+K DFLGL+ LT++
Sbjct: 532  RQMGVHAAGVIMSSERITDHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGLRNLTIM 591

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  +   +G+ +DL  +P DD +T+ LL    TLG+FQ +   MR  L  M+PD  E
Sbjct: 592  DDAVKMVKANKGIDIDLLALPLDDPKTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFE 651

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695
            DI A+ +LYRPGP+       Y  RKN ++ I  IHP ++  L+E    T G+I+YQEQV
Sbjct: 652  DISAVSALYRPGPMGMNSHTNYALRKNKQQDITPIHPELEKPLEEVLAVTYGLIVYQEQV 711

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+++GYSL EAD+LRR MGKK  EE+ K    F +GA KNG S      ++++L  
Sbjct: 712  QKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFTIFQAGARKNGYSDQAIQALWDVLVP 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H+AAY ++SY TA++K +YP E++A  +T   D+ +K   +  + R+  I+
Sbjct: 772  FAGYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAGLLTSVKDDKDKSAIYLNECRRMGIK 831

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            ++PP+VN    +F   GD+ I + L A++ VG      I++       + S  DF  +V+
Sbjct: 832  VLPPNVNESESNFAAQGDDVILFGLTAVRNVGQNVVDSIIKTRKSKGKYSSFPDFLDKVE 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------ 927
            +   N+R +ESL+ AGA D  G++R  L+   +++      V++       ++F      
Sbjct: 892  AVVCNKRTVESLIKAGAYDEMGHTRKGLVAHHESMIDNVVAVKRKEAEGQFDLFGGMGDE 951

Query: 928  -AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
               ++  F   +          S     E+ +LG Y S HPL   + +L      G  + 
Sbjct: 952  DGGDEPGFGLDVEFSDV-EWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKTDAGISQL 1010

Query: 987  V--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1011 TGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1059


>gi|224827306|ref|ZP_03700398.1| DNA polymerase III, alpha subunit [Lutiella nitroferrum 2002]
 gi|224600481|gb|EEG06672.1| DNA polymerase III, alpha subunit [Lutiella nitroferrum 2002]
          Length = 1147

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1039 (36%), Positives = 568/1039 (54%), Gaps = 32/1039 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL++HS +S+ +G + L++ + +      PAI ++D  NLF  ++F +     G
Sbjct: 2    NPPRFVHLRLHSEFSVYDGIVRLDDAVKRAKQHGMPAIGMSDLMNLFGMVKFYKACRGNG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+     I   D+                ++L      GY RL +L+++  L +Q +
Sbjct: 62   IKPIVSVDALISNDDDRDKP----------SRLLLTAKNRAGYLRLCDLLTQAVLHNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +   WL+      LI L+G   G +  A       VAE+R   +  LF D  Y+ +
Sbjct: 112  GRAELKREWLENGDNSQLICLSGAHLGDVGMALANGQRDVAERRARYWAGLFPDNFYLEV 171

Query: 187  QRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR           Q + LA    LP+VAT+   F+  +D++AH+  + +A    +  K R
Sbjct: 172  QRLDNPQIEGVVQQTLWLAGETGLPVVATHPIQFMDPDDFKAHEARVCIAEGYTLGDKRR 231

Query: 246  PRVTPDHYLK-NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            P+   +     +  EM+  F D+PEALEN+VEIARRC+  +Q+    LP F   E     
Sbjct: 232  PKNFAECQYFLSTEEMIERFHDIPEALENSVEIARRCNITVQLGKNYLPDFPTPEGM--- 288

Query: 305  KEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L + +  GLE    +L      +      Y  RL  E + I +M F GYFLIVA
Sbjct: 289  -TLDDYLVHLSKEGLETRLEKLYPDPEVRAAERPRYDARLKIECDTIVQMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N  PVGPGRGSGAGS+ A++L ITDIDPL ++LLFERFLNP+R+SMPDFD+D
Sbjct: 348  DFIVWAKNNGCPVGPGRGSGAGSLVAFSLGITDIDPLAYALLFERFLNPERVSMPDFDVD 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQD R  VI YV+ KYG E V+QI TFG++ AKA +RDVGR L +PY   D + KLIP 
Sbjct: 408  FCQDNRYRVIEYVRQKYGAEAVSQIATFGTMAAKAVVRDVGRVLDLPYMFCDGVSKLIPA 467

Query: 482  DPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P    S   A+  +   +E    +  +  L E+++KLEGL R    HA G++I    ++
Sbjct: 468  APGKQYSLDDAVEMEPILKERLENEEELRELWELAKKLEGLTRGIGMHAGGVLIAPGKIT 527

Query: 541  QLVPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--VKVD 597
               P+Y+    D +PV+  +   +E+ GL+KFDFLGL+ LT++  ++ ++         D
Sbjct: 528  DFCPVYQAAGDDAVPVSMLDKDDVEQIGLVKFDFLGLRNLTIIDLAVKYIKALDPAFDTD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+L+ F D   Y +L    T  +FQLES GM++ LE ++PD  EDIIA+++LYRPGP+ +
Sbjct: 588  LNLLEFTDPAAYQILQKANTTAVFQLESDGMKRLLEKLKPDRFEDIIAVLALYRPGPLGS 647

Query: 658  IVVYNNRKNG--KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V +       K+++   HP +   L+ T GVI+YQEQVMQI+Q++ GY+L  AD+LRR
Sbjct: 648  GMVDDFILRKAGKQEVDYFHPDLTACLEPTYGVIVYQEQVMQISQIIGGYTLGGADMLRR 707

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM + + +   GA+  G    +A  +F+L+AKFA+YGFNKSH AAYAV+SYQ
Sbjct: 708  AMGKKKPEEMAEHRGKIAQGAAAKGYDPKLAEQLFDLMAKFAEYGFNKSHTAAYAVVSYQ 767

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NR 834
            TAW+K H+   F+AA+M+ E+DN +++K F  D+    ++ +PP VN     F   D   
Sbjct: 768  TAWLKAHHCAAFMAATMSSELDNTDQLKVFYDDSIANKLKFLPPDVNESFYRFVPVDRQH 827

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L A+KG G     HI+       PF  L DFC R D + +N+R +ESL+ AGA D 
Sbjct: 828  IRYALGAVKGTGEAAVEHIVAVRQEGGPFTDLFDFCRRTDKRTVNKRTIESLIRAGAFDA 887

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R +L  ++    + A+    N       +F       +  + + +      +V+  
Sbjct: 888  IEPNRAKLFANVGLAMEAAEQEAANANQG--GLFDMFDADSAPTVEMVEVKPWPPAVQLA 945

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+  +G+Y SGHP   Y+  +R            T R     +A  V   + K   +G 
Sbjct: 946  EEKLAIGYYLSGHPFSAYEKEVRGFIKTPLSRI--TPRKEPQLIAGFVTGLRTKVGNRGK 1003

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + ++   + + + E + F
Sbjct: 1004 -MAFIQLDDGSAKREVSVF 1021


>gi|291302505|ref|YP_003513783.1| DNA polymerase III subunit alpha [Stackebrandtia nassauensis DSM
            44728]
 gi|290571725|gb|ADD44690.1| DNA polymerase III, alpha subunit [Stackebrandtia nassauensis DSM
            44728]
          Length = 1179

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/1069 (32%), Positives = 547/1069 (51%), Gaps = 53/1069 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K   FVHL VH+ YS+L+GA  +  +  ++      +IA+TD  N++ A EF Q+A  
Sbjct: 1    MSK--DFVHLHVHTEYSMLDGAAKMRPMFAEVERLGMSSIAMTDHGNMYGAYEFYQEAKK 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             GI+PIIG +  +   D                   +       + +  +   G + L++
Sbjct: 59   TGIKPIIGIEAYLAPGDRAHKKPVRWGRPDQKSDDVSGGGAYTHMTMWAANGSGLRNLLK 118

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  Q  R+    L +   EG+I  TG  SG +      +    A      +
Sbjct: 119  LSSLASFEGQ-YQKPRMDAELLSKY-AEGIIATTGCPSGEVQTRLRLDQPDEALAAAAKY 176

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG D  ++ L  H    +      ++ ++    LPL+ATN+S ++ + D + H  L+
Sbjct: 177  QDIFGKDNFFLELMDHGLDIETRVREGLLDISKKLGLPLLATNDSHYVHQHDSDNHAALL 236

Query: 233  AVAHSTVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
             V     ++  +R   + D +Y+K+ +EM  ++S+LPEA +NT+ IA R     +V A +
Sbjct: 237  CVQSGKTLTDPNRFAFSGDGYYIKSPAEMRELWSELPEACDNTLLIAERIESYEEVFAEV 296

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
                     +   + E+  LR         R   G        Q+Y+ R+D EL V++ M
Sbjct: 297  DRMPRFPLKEG--ETEDILLRRDVEKYTPNRFPDGL------TQEYKDRIDRELGVMSAM 348

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             FSGYFL+V D ++WAK   IP GPGRGS  GS+ AY L ITD+DP+  SL+FERFLNP+
Sbjct: 349  GFSGYFLVVGDLVRWAKSQKIPTGPGRGSATGSLVAYILQITDLDPIEHSLIFERFLNPE 408

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPY 469
            R+S PD D+DF + RR EV++Y   K+G E VAQ+ITFG+++ KAAL+D  RA   Q  +
Sbjct: 409  RVSPPDIDLDFDERRRGEVMQYTVEKWGEENVAQVITFGTIKTKAALKDAARAHLGQPGF 468

Query: 470  SQVDRLCKLIPNDPAH---------PVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            +  +R+ K +P   A            + +   + +  R     +P V ++ + ++ LEG
Sbjct: 469  AVAERIAKALPPPVAAQDIPLSGIVDPNHERYNEAAEVRALVENEPEVKQIFDTARGLEG 528

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R+A  HA  ++I   PL   VP++        +T ++    E  GL+K DFLGL+ LT
Sbjct: 529  LIRNAGVHACAVIISSVPLLGQVPLWMRP-DGSVITGWDYPSCEAMGLLKMDFLGLRNLT 587

Query: 581  LLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  ++D + +          I  DD +T+ LL    + G+FQ E +GM+  L+ MQP  
Sbjct: 588  VIGDAIDNVKRNHGVELSTETITLDDPKTFELLCRGESAGVFQFEGAGMQDLLKRMQPKK 647

Query: 640  IEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQE 693
              DI A+ +LYRPGP+  +  + Y  R NG++    IHP     ++P+L ET  +++YQE
Sbjct: 648  FGDIAAISALYRPGPMAANAHLNYAERANGRQSPEPIHPELKDALEPILGETFHLLVYQE 707

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVM IAQ L+GY+L  AD+LRRAMGKK KE ++K+ E+F +G + NG S      +++++
Sbjct: 708  QVMAIAQQLAGYTLGGADLLRRAMGKKKKEIIEKEFEKFSNGMTANGYSMEACQTLWDVM 767

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNKSH A Y +++Y TA++K +YP E++AA +T   DN +K   +  D R+  
Sbjct: 768  LPFAGYAFNKSHTAGYGLVTYWTAYLKANYPAEYMAALLTSVGDNKDKSALYLADCRKLG 827

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV 872
            I+++PP VN    +F      I + L AI+ VGT     I+    A   ++S  DF  + 
Sbjct: 828  IKVLPPDVNESRRNFSAVGGDIRFGLGAIRNVGTGVVDSIVATREAKGNYESFSDFLQKS 887

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            +    N+RV+ESL+ AGA D   +SR  L +  + + +    V++       ++F     
Sbjct: 888  ELPVCNKRVIESLIKAGAFDSLKHSRKALCERHEVLVESIVGVKRKEAEGQFDLFGGMLT 947

Query: 933  TFSDKITLEK------FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
                                      E E+ +LG Y SGHPL+  + ILRK       + 
Sbjct: 948  PDQPDAATPGGDTDFSGDDWPRKTTLEFEREMLGLYVSGHPLEGAEMILRKNSENRIADL 1007

Query: 987  V--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +      G ++ +A ++ S +++ T++G      T  +     E  FFP
Sbjct: 1008 LTSDIPDGTSVTIAGIISSLERRVTKQGKPWAKATVEDLDAAIECLFFP 1056


>gi|50842630|ref|YP_055857.1| DNA polymerase III subunit alpha [Propionibacterium acnes KPA171202]
 gi|50840232|gb|AAT82899.1| DNA polymerase III alpha subunit [Propionibacterium acnes KPA171202]
          Length = 1220

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/1073 (31%), Positives = 536/1073 (49%), Gaps = 58/1073 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-- 66
              FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +      
Sbjct: 34   SDFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKKYDGD 93

Query: 67   ----IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVLLVST 105
                ++PIIG +  +                    D      +  +       + +    
Sbjct: 94   QNPLVKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTMWAKD 153

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
            +EG   L  L S     +      R+    + +    G+I  TG  SG +         +
Sbjct: 154  SEGLHNLFRLSSLAS-YEGYYMKPRMDRELMGQYP-GGIIASTGCPSGEVQTRLRLGQFE 211

Query: 166  VAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEE 223
             A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S +++E+
Sbjct: 212  EACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHYVTED 271

Query: 224  DYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
              +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ +     
Sbjct: 272  QADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLTEMIG 331

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
               +V   +         +   + +E+ LR K   GL+ +            ++  +RL+
Sbjct: 332  SYDEVFKYVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVLERLE 383

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             EL+VI  + F+ YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  I+PL   L
Sbjct: 384  TELSVIEPLGFASYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPLEHGL 443

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++AKAA++D  
Sbjct: 444  LFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAAVKDAN 503

Query: 463  RALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLE 513
            R L  P++  D++ K +P D     V L  I D S         FR+    +P V +++E
Sbjct: 504  RILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDVAKVVE 563

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ GL+K DF
Sbjct: 564  TAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLMKMDF 623

Query: 574  LGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL+ L ++   +  +   RG+ VDL  I  DD  TY +L    TLG+FQL+ + MR  L
Sbjct: 624  LGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGTAMRSLL 683

Query: 633  EGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPMLKETQ 686
              M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP +    D +L  T 
Sbjct: 684  RLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEILAPTY 743

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
             +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G S    
Sbjct: 744  HLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYSDDAI 803

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +K+  + 
Sbjct: 804  QTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKMAMYL 863

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865
             D R  +I ++PP VN   ++F      I + L A++ VG      I+ A   + P    
Sbjct: 864  ADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRAREENGPAPDF 923

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
              F  +V     N+R++ESL+ AGA D  G+SR  L+            +++N+ N  ++
Sbjct: 924  FTFLDQVSLTVCNKRLIESLIKAGAFDSMGHSRRGLMAVYGQAVDAVIDIKRNQANGQDD 983

Query: 926  IFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
            +F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L       
Sbjct: 984  LFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAESDIS 1043

Query: 983  YEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              E V           +  MV    ++ T+ G     VT  +         FP
Sbjct: 1044 VAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1096


>gi|114800101|ref|YP_760471.1| DNA polymerase III subunit alpha [Hyphomonas neptunium ATCC 15444]
 gi|114740275|gb|ABI78400.1| DNA polymerase III, alpha subunit [Hyphomonas neptunium ATCC 15444]
          Length = 1140

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 459/1033 (44%), Positives = 635/1033 (61%), Gaps = 26/1033 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F+HL + SS+SLLE  ++  ++         PA+A+TD N LF ALE S K   
Sbjct: 1    MTK-PVFIHLAIRSSFSLLESMITPADLAKWCKQYSMPAMAVTDRNCLFGALELSIKLSD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPI+ C  D+              P   +  +        GY+RL+ L SR YL + 
Sbjct: 60   YGVQPIMACCFDVTDGS----------PKAELFRLTAYAQDDVGYKRLMFLSSRAYL-EA 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 R+   +L E  TEGLI+LTGG+ G + R         A   L T    +  R YV
Sbjct: 109  DDGVPRLHKKYLLE-NTEGLILLTGGAEGEVARHILKGRLADARTELSTLATAYPGRCYV 167

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             + RH   +  + E+ +V+LAY   LPLVAT+++ FL  ED  AHD +M +A+   + Q 
Sbjct: 168  EITRHGTQEEIKSETGLVELAYELGLPLVATHDARFLKPEDVTAHDAMMCIANGQYLGQD 227

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR RV PD YLK+  EM  +F+DLPEA+ NT EIA RCS   +       + I       
Sbjct: 228  DRKRVEPDQYLKSPEEMEVLFADLPEAIANTSEIAIRCSVRAET-----RKPILPNFSKE 282

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             + E  EL  +A  GLE RLA+         Q Y  RL++EL +I RM F GYFLIV+DF
Sbjct: 283  GRSEGEELALQARQGLEERLAEADRLYAE-RQVYLDRLEYELGIIDRMGFPGYFLIVSDF 341

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N IPVGPGRGSGAGS+ A+ L ITD+DPLRF LLFERFLNP+R+SMPDFD+DFC
Sbjct: 342  IKWAKANGIPVGPGRGSGAGSLVAWVLLITDLDPLRFDLLFERFLNPERVSMPDFDVDFC 401

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            Q+RR EVIRYV+ KYG + VA IITFG+LQAKA +RDVGR +QMPY QVDRL KLIP +P
Sbjct: 402  QERRGEVIRYVREKYGADSVAMIITFGTLQAKAVVRDVGRVMQMPYGQVDRLAKLIPFNP 461

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A P +  +AIA + +F +   AD  V  L++ ++ LEG+YR+A THAAG+VI DRPL +L
Sbjct: 462  AKPPTLDEAIAAEPKFDDEIAADARVGELIDTARALEGMYRNAGTHAAGVVIADRPLVEL 521

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+Y D R+DLP TQFNMK+ E AGL+KFDFLGLKTLT++ ++L+F+ + G  V  +   
Sbjct: 522  VPLYNDPRADLPATQFNMKYAEMAGLVKFDFLGLKTLTVIDRALNFIRRDGGDVGPAWRS 581

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  TY L+ +  TLG+FQLE +GMR  L  ++P+ IED+IA++SLYRPGP++NI VY 
Sbjct: 582  MDDPATYELMASGETLGVFQLEGAGMRDTLRRVRPNNIEDLIAIISLYRPGPMENIPVYV 641

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              K     +   HP + P+L+ T GV +YQEQVM++AQ ++GYSL EAD+LRRAMGKK  
Sbjct: 642  QGKEDPASVRYQHPDLKPVLEATYGVPVYQEQVMRMAQEIAGYSLGEADLLRRAMGKKKL 701

Query: 723  EEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            EEM  Q+ RF+   A+  G+  ++A  IF+ + KFA YGFNKSHAAAYA+I Y TA++K 
Sbjct: 702  EEMIAQRRRFVEGAAANKGMKDSLANEIFDTMEKFAGYGFNKSHAAAYALIGYHTAFLKC 761

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP EFLAASM+L++ N +K+  F Q+A++  + ++ P +N+   DF V ++ I Y+L A
Sbjct: 762  HYPKEFLAASMSLDIGNTDKLAAFFQEAKRLRLHVLAPDINSSQPDFDVNEDGIVYALGA 821

Query: 842  IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IKGVG    +H+        PF  L DF  RVD K +N++ LESL  +GALDC   +R +
Sbjct: 822  IKGVGVEAMKHVSAVRSEGGPFKDLYDFAERVDPKHVNKKALESLAKSGALDCLEGNRAR 881

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +   +  + +Y     ++R+     +F   +     +          +  + + E + +G
Sbjct: 882  VFAVVPMLAQYCASHAEDRSGGQGGLFGESEPAL--RPEFPPSRPWTAQQKLDEEFKSIG 939

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            FYFSGHPLD     + +  +    E       G  + +  +V ++  K +++G +  ++T
Sbjct: 940  FYFSGHPLDDVLTSIDRDRVTLAMEVHERAGDGKPLEMIGIVRTRNDKPSKRGGKFAFLT 999

Query: 1020 FSEPAKEYEANFF 1032
             S+P  E E   F
Sbjct: 1000 ISDPTGELEMMVF 1012


>gi|194017300|ref|ZP_03055912.1| DNA polymerase III subunit alpha [Bacillus pumilus ATCC 7061]
 gi|194011168|gb|EDW20738.1| DNA polymerase III subunit alpha [Bacillus pumilus ATCC 7061]
          Length = 1111

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1026 (36%), Positives = 574/1026 (55%), Gaps = 39/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+VHLQVHS YSLL  A  +  ++ K       A+A+TD + ++  +EF ++    GI+P
Sbjct: 2    SYVHLQVHSGYSLLSSAAKVKELVLKAKELGCKALALTDDHVMYGTVEFYKECKKHGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG    + + +                 +VLL    EGYQ LI++ S +    + K   
Sbjct: 62   VIGLTASVFIDEQ----------ETEAYPLVLLAKNNEGYQNLIKISSVL----KSKSKA 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
             +   WL+     GLI +T G SG I+     +  + A       K +FG+  +Y+ LQ 
Sbjct: 108  GLKEKWLKSYHR-GLIAMTPGVSGYIETLLQHDQLEEAHDAAKQLKHIFGEGHVYIALQP 166

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                D     ++  ++ + ++PLVAT +  +++ ED  A+  L A+     + + +  R 
Sbjct: 167  F-QQDESLAGKLRDVSKSADIPLVATGDVHYINLEDKTAYMCLKAIKAGQQLPEVEEDRA 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                      EM   ++   E L  TVEIA RC   L +    LP +   +    Q   +
Sbjct: 226  EKHFRTF--EEMKEWYTQDTELLSRTVEIADRCEVDLNLGQTKLPSYPTPD----QSTAD 279

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR   V G++ R              Y +RL++EL++I +M FS YFLIV DF+++A 
Sbjct: 280  QFLRKVCVEGMKQRKI-------ASNDAYVKRLEYELSIIQKMNFSDYFLIVWDFMKYAH 332

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I  GPGRGS AGS+ AY L ITD+DPLR  LLFERFLNP+R+SMPD DIDF   RRD
Sbjct: 333  DQGIVTGPGRGSAAGSLVAYVLFITDVDPLRHGLLFERFLNPERISMPDIDIDFPDTRRD 392

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+I YV++KYG   VAQI+TFG+L AKAALRDVGR + +     DRL KLIP+ P   + 
Sbjct: 393  EIISYVKDKYGDMHVAQIVTFGTLAAKAALRDVGRVMGIDSKAADRLAKLIPSKPGTTLK 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
               +A     +        + ++ + + K+EGL RH STHAAG+V+ + PL+++VP+  D
Sbjct: 453  EA-LAASPELKAMLQQSEELRQVFQTALKVEGLPRHTSTHAAGVVLSEEPLTEIVPIQ-D 510

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFLAQRGVKVDLSLIPFDDHE 607
                + +TQ+ M ++E  GL+K DFLGL+ LTL++        Q  V ++ S I ++D +
Sbjct: 511  GHDGVYLTQYAMNYLEDLGLLKMDFLGLRNLTLIESIKNQIERQENVHINFSDISYEDQK 570

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL+   T GIFQLES GMRQ L  ++P  +EDI+A+ +LYRPGP++NI ++ +RK+G
Sbjct: 571  TFELLSAGDTTGIFQLESQGMRQVLRRLKPSSLEDIVAVNALYRPGPMENIPLFIDRKHG 630

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            + K+   HP +  +LK+T GVI+YQEQ+M IA  ++G+ L EAD+LRRA+ KK K+ +D+
Sbjct: 631  RVKVSYPHPDLYDILKDTYGVIVYQEQIMLIAAKMAGFQLGEADLLRRAVSKKDKKVLDE 690

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ G  K      IA ++++L+ KFA+YGFN+SHA AY++I +Q A++K HYP+ F
Sbjct: 691  ERSHFVEGCLKKEYPVNIANDVYDLIVKFANYGFNRSHAVAYSMIGFQLAYLKAHYPLYF 750

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +   +T  + N +K+ ++  +A++  I ++ PS+N     F V    I YSL AIK VG 
Sbjct: 751  MCGLLTSVIGNEDKVAQYFYEAKEKGISVLKPSINKSEFPFTVEKGEIRYSLRAIKNVGV 810

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            +  + I  A  +KPF+ L DFC+RV +K +NR+ +E+L+F+GA+D    +R  LL S+D 
Sbjct: 811  SAVKDIYRARQEKPFEDLFDFCARVSAKSVNRKTIEALIFSGAMDELYPNRASLLASIDI 870

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
               +  ++     +   +       TFS K    +          + E+  LG Y S HP
Sbjct: 871  ALDHVSFLN---PDDQLDFLGDT--TFSIKPKYAEIEELPLVDLLQFEKEALGLYLSNHP 925

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            +  Y+  LR+ G        + I+   + +  ++   +  +T+ G  + ++TF +   E 
Sbjct: 926  VQAYRDRLRENGAVDIIRLSSYIK-RKVSMGGLLTKVKSIRTKNGQSMAFITFGDETGEM 984

Query: 1028 EANFFP 1033
            E   FP
Sbjct: 985  EGVVFP 990


>gi|284045058|ref|YP_003395398.1| DNA polymerase III subunit alpha [Conexibacter woesei DSM 14684]
 gi|283949279|gb|ADB52023.1| DNA polymerase III, alpha subunit [Conexibacter woesei DSM 14684]
          Length = 1178

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/1046 (33%), Positives = 552/1046 (52%), Gaps = 42/1046 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL VHS YSLL+GA  ++ +  + AA  QPA+ +TD   +  ++E  +      I+P++
Sbjct: 10   AHLHVHSEYSLLDGACKIDALAARAAAFDQPALGLTDHGVMNGSVEMYKACKKHDIKPLL 69

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC++ +    + +     +        + LL     GY+ L++L S  YL    +    +
Sbjct: 70   GCEVYVVDDRHFRAGRAERN------HLTLLAQNDVGYRNLVKLSSTGYLEGLHRGKPGV 123

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR 190
                + +  +EG+I LTG  +    +    +    A   +     +FG +++Y  +Q++ 
Sbjct: 124  DFEIMSQ-HSEGIIALTGCLASRFCQRLVNDRPDEARAHVDDLMNIFGREQVYFEVQKNG 182

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D+ +    +V++A     PLV T +  +L  EDY  H  L+ V   + +++      T
Sbjct: 183  IADQDKANEGIVRIAREVGRPLVGTGDVHYLRREDYHHHTALLCVQTKSTLAEPKMTFDT 242

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + YLK+  EM   F++ P+AL  T+E+A RC   + +   ++P +     +    EE  
Sbjct: 243  NEFYLKSNQEMADAFAEWPDALPTTLEVAERCQVEIPLGGQLIPSYPTPNGE----EERA 298

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR   + GL +R      A         +R++ EL VI +M F+ YFLIV DF++++K+
Sbjct: 299  YLRQLVLDGLHLRYGNPPPAAAV------ERMEMELAVIDKMGFNAYFLIVWDFVRYSKE 352

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N + VGPGRGS AGS+ AY L ITD+DPL + LLFERFLNP+R+SMPD DIDF    R+ 
Sbjct: 353  NGVAVGPGRGSAAGSIVAYCLAITDVDPLAYDLLFERFLNPERVSMPDIDIDFSVRGRER 412

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL-IPNDPAHPVS 488
            VIRYV  KYG E VAQIITFG +  +AA RD  R L   Y   D+L KL        P S
Sbjct: 413  VIRYVTEKYGRESVAQIITFGKMFPRAATRDAARVLGHDYGAGDKLAKLIPDPIMGRPPS 472

Query: 489  LQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                       R    ++P   +++++++ LEG+ R++S HAA +VI DRPL+ +VP+  
Sbjct: 473  FDDCLQPGEPLRGEVDSNPVSRQIVDVARGLEGIVRNSSIHAAAVVIADRPLTDIVPLQL 532

Query: 548  DVRS--------DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
                           VTQ++MK +E+ GL+K DFLGL+ L +++ +LD + +  G + D+
Sbjct: 533  ADAGTDDRGDKVYRTVTQYSMKPVEELGLLKMDFLGLRNLDVIEDALDIIERSTGTRPDM 592

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD +TY ++    ++G+FQ ES GMR+ L+ ++P  +ED+IAL +LYRPG +D I
Sbjct: 593  TTLPLDDGKTYDMIARGDSVGVFQFESEGMRETLKKVRPTELEDLIALNALYRPGAMDQI 652

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y   K   E I      + P+L+ T GVI+YQEQ MQIA+ L+G+S ++AD LR+A+G
Sbjct: 653  PTYARGKRNPESISYPDERLRPILESTNGVIVYQEQAMQIAKSLAGFSGAKADDLRKAIG 712

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK +  M + K  FI G   +  S+ +   ++    K ADY FNK+HAA YA+I+Y+TAW
Sbjct: 713  KKNRAAMAELKPEFIEGCRASRTSEQVIEWLWATNEKSADYSFNKAHAACYALIAYRTAW 772

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K ++P E++AA ++  MD  +K+  F     Q  I+I+PP VN    DF V D  I + 
Sbjct: 773  LKANHPAEYMAALISSVMDTKDKVPFFVAQTEQMGIEILPPDVNESDHDFMVVDGNIRFG 832

Query: 839  LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L A+KGVG      I  A   D PF SL DFC RVD K +N++ +E+L+  GA    G S
Sbjct: 833  LDAVKGVGYAAVEGIKRAREEDGPFTSLWDFCERVDGKAVNKKAIEALIKCGAFSSTGAS 892

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-----------FSDKITLEKFSVE 946
            R  +L  L+  Q   Q  +++      +IF                  +           
Sbjct: 893  RKGMLGVLEQAQAAGQKAQQDALIGQGSIFDLGPEPGAANGAAASAFAAPSHPGIPAEEF 952

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            + +     E+  +G + S HPL   +  +R        E      G+ + +  ++   ++
Sbjct: 953  DQAEMLAAEKESIGLFISAHPLKAVREAMRVKVDCTLAELSDRKDGDWVTVGGIITQCKR 1012

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +T++G  + + T  +     E   F
Sbjct: 1013 LRTKRGDHMMFATLDDLEGTVEILIF 1038


>gi|84495994|ref|ZP_00994848.1| DNA polymerase III subunit alpha [Janibacter sp. HTCC2649]
 gi|84382762|gb|EAP98643.1| DNA polymerase III subunit alpha [Janibacter sp. HTCC2649]
          Length = 1204

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/1077 (32%), Positives = 544/1077 (50%), Gaps = 64/1077 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YS+L+GA  + ++ ++      PA+A+TD   L+ A EF +KA   G++PI
Sbjct: 16   FVHLHVHTEYSMLDGAARIGDLFNRAGELGMPALAMTDHGYLYGAHEFWRKAQGTGVKPI 75

Query: 71   IGCQLDIDM------------QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            IG +  I               D         +       + LL    +G + L  + S+
Sbjct: 76   IGLEAYITPGTHRTDKTRVKWGDERTRQGDDVSGSGAYTHMTLLAKNNDGLRNLFRMDSQ 135

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L     +  RI    L +   +GLI  TG  S  I          +A++    ++ LF
Sbjct: 136  ASLDQVYAKWPRIDRELL-DAHGKGLIATTGCPSSEIQTRLRLGQYDLAKQAASDYRDLF 194

Query: 179  G-DRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            G +  +  +  H    +R     +++LA    LPL+ATN+S +   ED  AH  L+ V  
Sbjct: 195  GAENYFCEVMDHQNEIERRTIKDLLRLAKELNLPLLATNDSHYTYPEDATAHGALLCVQS 254

Query: 237  STVVSQKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
             + +   +R +   D +YLK+ +EM   + + P+A +NT+ +A  C            R+
Sbjct: 255  GSTLMDPNRFKFDGDGYYLKSAAEMRHTWREFPQACDNTLLVADMCEVSFTEGE---GRY 311

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            + +      + EE+    +   GL  R      A        +++ D+E+++I+   ++ 
Sbjct: 312  MPRFDCPPGESEESWFVKEVQRGLSARFEGEIPAYA------QKQADYEVDIISSKGYAS 365

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD+DP+   L+FERFLNP+RMSM
Sbjct: 366  YFLVVADFINWAKENGIRVGPGRGSGAGSMCAYAMRITDLDPIPHGLIFERFLNPERMSM 425

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDF + RR EVIRYV  KYG +RVAQI+T+G+++AK A++D  R +  P++  D+L
Sbjct: 426  PDFDIDFDERRRGEVIRYVTEKYGSDRVAQIVTYGTIKAKQAVKDSARVMGHPFNVGDQL 485

Query: 476  CKLIPND-PAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
             K +P D     V             A+ + FR     +P    ++E ++ LEGL R   
Sbjct: 486  TKAMPADVMGKGVPLSGIYDPEHPRYAEGNEFRALVETEPHFKEVVETAKGLEGLKRQWG 545

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HAAG+++   PL  ++P+ + ++    +TQF+    E  GL+K DFLGL+ LT+L  ++
Sbjct: 546  VHAAGVIMSSEPLIDVIPIMKRLQDGQILTQFDYPTCETLGLVKMDFLGLRNLTILDDAI 605

Query: 587  DFLA---QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            + +       + +D       D  TY LL +  TLG+FQL+  GMR  L+ MQPD  EDI
Sbjct: 606  ENVKTNRNEDLDLDALSKDMTDKATYRLLASGDTLGVFQLDGGGMRTLLKLMQPDNFEDI 665

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEK--------------IVSIHPLIDPMLKETQGVI 689
             A ++LYRPGP+      N       K                 +   + P+L  T G++
Sbjct: 666  SAALALYRPGPMGVNAHTNFALRKNGKQELTPLDPQLKGKLQQEMIDALGPILGTTYGLV 725

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            IYQEQVM+IAQ L+GY+L  AD+LRRAMGKK KE +DK+   F +G    G ++     +
Sbjct: 726  IYQEQVMEIAQQLAGYTLGNADLLRRAMGKKKKEVLDKEYVPFSTGMKAKGFNEASIAAL 785

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            + +L  F+DY FNK+H AAY ++SY TA++K +YP E++A  +T   D+ +K   +  + 
Sbjct: 786  WGVLVPFSDYAFNKAHTAAYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKSALYLGEC 845

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDF 868
            R+  I+++PP VN     F      I + +AAI+ VG      I+ A  +   F S  DF
Sbjct: 846  RRMGIKVLPPDVNDSVARFAAVGTDIRFGMAAIRNVGHNVVEAIIGAREEKGAFTSFRDF 905

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
             S+  +   N+R +ESL+  GA D  G SR  LL+  +        +++      +++F 
Sbjct: 906  LSKCPAVVCNKRTIESLIKGGAFDGLGESRAGLLRIHEEYVDAFVSIKRQEAIGQDSLFG 965

Query: 929  HEKGTFSDK---------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                   D          +T       + S     E+ +LG Y S HPL   + IL++  
Sbjct: 966  AFGDEGGDGAGGDATMMGLTSVPTVEWDKSTLLTFEREMLGLYVSDHPLFGVEHILQQHA 1025

Query: 980  IKGYEESVA---TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    A      G  + +A ++   Q K+T+KG      T  +     E  FFP
Sbjct: 1026 DTAIATLSAEDGKPEGTMVTVAGLITGLQIKRTKKGDLWAIATVEDLEGAVECLFFP 1082


>gi|261492352|ref|ZP_05988914.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica
            serotype A2 str. BOVINE]
 gi|261312035|gb|EEY13176.1| DNA-directed DNA polymerase III alpha subunit [Mannheimia haemolytica
            serotype A2 str. BOVINE]
          Length = 1142

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/1031 (38%), Positives = 588/1031 (57%), Gaps = 38/1031 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            ++ G   + +++    A+   A+ +TD  N    ++F  +A  AGI+PIIG  + +    
Sbjct: 1    MINGLAKVKSLVKTAVANNMVAMGLTDFTNFCGLVKFYGEALGAGIKPIIGADVYV---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  + +        + LL    +GY  + +++S+ Y      +   +   WL E+  
Sbjct: 57   ------RTEAGSEDYFELTLLAKNNKGYHNITQILSKAYQQGYI-EFPMVEREWLAEL-N 108

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQV 200
            EG+I+L+GG  G + +A    + Q AE+++  +++ + +  Y+++ R    D  R   Q 
Sbjct: 109  EGIIILSGGRMGDVGKALLKENRQEAEEKVAFYQQYYPNHFYLSVCRTGRADEERYIKQA 168

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
            V+ +  + +PLVA N+ +FL E+D++AH++ +A+  S  +    RP+  +P  Y +   E
Sbjct: 169  VEFSQKNAIPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPKKYSPKQYFRTEEE 228

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+DLP AL NTVEIA+RCS  +++                +   E+ L  K+  GL
Sbjct: 229  MCKLFADLPSALANTVEIAKRCSVTVRLGEYF-----LPNFPTGELSTEDFLVKKSKEGL 283

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RL         +      Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGP
Sbjct: 284  EERLEFLFPDPEERANKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 343

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D RD VI +V  
Sbjct: 344  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 403

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PYS VDR+ KLIP DP   +  +A A + 
Sbjct: 404  TYGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPGMTLE-KAFAAEP 462

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 463  KLPELYEADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLHPVT 522

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYHL 611
             F+   +E AGL+KFDFLGL+TLT+++ +L+ + +R        + +  I  DD +++ L
Sbjct: 523  HFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINERLAREGKEPIRIETISLDDKKSFAL 582

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK- 670
            L    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+++ +V N       K 
Sbjct: 583  LLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGKE 642

Query: 671  ------IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                      H  + P+L+ T GVI+YQEQVMQIAQ L+GY+L  AD+LRRAMGKK  EE
Sbjct: 643  EVSYPDPQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEE 702

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M  Q+E F  GA   GI   +A  IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 703  MAAQREVFEKGAEAKGIDGKLAGQIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 762

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA MT EMDN +KI  F  +     + ++PP VN+    F V +   I Y L AIK
Sbjct: 763  AEFMAAVMTSEMDNTDKIVGFYDECMNMGLTVVPPDVNSGKHRFSVNEKGEIVYGLGAIK 822

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+ A   +  F  L D  +RVD KK+NRR  ESL+ +GA D  G  R  L+
Sbjct: 823  GVGEGPIEAILAARQKEGKFKDLFDLTARVDLKKINRRTFESLIMSGAFDKLGPHRAALM 882

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGF 961
            ++L++  K +    K       ++F     T  + +         +  V  + E+  LG 
Sbjct: 883  KNLEDALKASDQHAKMEELGQSDMFGVLTETPEEVQNAYANTPKWSEQVILDGERATLGL 942

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y SGHP+  +   L         E   T RG    ++ +V++ +   T++GSRIG  T  
Sbjct: 943  YLSGHPIGRFLKELSHYAPNRLNELQPTFRGQMTTVSGIVMASRVAVTKRGSRIGIATIE 1002

Query: 1022 EPAKEYEANFF 1032
            + + + +   F
Sbjct: 1003 DRSGKLDITLF 1013


>gi|282853897|ref|ZP_06263234.1| DNA polymerase III subunit alpha [Propionibacterium acnes J139]
 gi|282583350|gb|EFB88730.1| DNA polymerase III subunit alpha [Propionibacterium acnes J139]
          Length = 1190

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/1077 (31%), Positives = 539/1077 (50%), Gaps = 59/1077 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S  FVHL  H+ YS+L+GA S   +  ++A    PA+A+TD  N+F A EF Q +  
Sbjct: 1    MARS-DFVHLHTHTEYSMLDGAASNEKLFAEVARQGMPAVAMTDHGNMFGAYEFFQISKK 59

Query: 65   AG------IQPIIGCQLDIDM-----------------QDNLKMTNQGKTPFPTVPSIVL 101
                    ++PIIG +  +                    D      +  +       + +
Sbjct: 60   YDGDQNPLVKPIIGIEAYVAPSTRKSRVQEFWGTSRDAGDPDAEGGKDVSGGGRYTHMTM 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                +EG   L  L S     +      R+    + +    G+I  TG  SG +      
Sbjct: 120  WAKDSEGLHNLFRLSSLAS-YEGYYMKPRMDRELMGQYP-GGIIASTGCPSGEVQTRLRL 177

Query: 162  NSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
               + A +    ++ +FG +  +  L  H    ++   S +++LA   ++PL+ TN+S +
Sbjct: 178  GQFEEACQAASDYRDIFGRENYFCELMDHGVPIEKQVRSDLLKLAKKLDIPLLVTNDSHY 237

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            ++E+  +AHD L+ V         +R R     +Y+K+  +M ++F D PEA +NT+ + 
Sbjct: 238  VTEDQADAHDSLLCVGVGRNKDDPNRFRFNGSGYYIKSSEQMRALFPDHPEACDNTLLLT 297

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
                   +V   +         +   + +E+ LR K   GL+ +            ++  
Sbjct: 298  EMIGSYDEVFKYVDRMPQFDVPEG--ETQESWLRKKLQEGLDEKFGPN------PPKEVL 349

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RL+ EL+VI  + F+ YFL+V+D    A+   +PVGPGRGS AGS+ AY   I  I+PL
Sbjct: 350  ERLETELSVIEPLGFASYFLVVSDICNAARSMGVPVGPGRGSAAGSLVAYLTGIIAINPL 409

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TFG ++AKAA+
Sbjct: 410  EHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGAEYTSQVNTFGKIKAKAAV 469

Query: 459  RDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVD 509
            +D  R L  P++  D++ K +P D     V L  I D S         FR+    +P V 
Sbjct: 470  KDANRILGYPFALGDKITKAMPPDVMGKGVPLDKIFDSSHERYGEGQEFRQLVADNPDVA 529

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            +++E ++ LEGL R    HA   ++   PL  LVPM++  +  + +  F    +E+ GL+
Sbjct: 530  KVVETAKGLEGLIRGTGVHACAFILSSTPLLDLVPMHKRDKDGMIIAGFAYPQLEEMGLM 589

Query: 570  KFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K DFLGL+ L ++   +  +   RG+ VDL  I  DD  TY +L    TLG+FQL+ + M
Sbjct: 590  KMDFLGLRNLGIMDHCIKIIKANRGIDVDLKNIALDDKTTYEMLARGDTLGVFQLDGTAM 649

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPML 682
            R  L  M P C +DI+A+++LYRPGP+  +  + Y  RKN +E I+ IHP +    D +L
Sbjct: 650  RSLLRLMGPTCFDDIVAVLALYRPGPMGANAHISYAQRKNNREPIIPIHPELKEDLDEIL 709

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
              T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +++    F +G  ++G S
Sbjct: 710  APTYHLIVYQEQIMSIARKLAGYTLGGADLLRRAMGKKKKHILEENFIPFQAGMREHGYS 769

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
                  +++++  FA Y FNKSHAA Y ++SY TA++K +YP E+ AA +T   D+ +K+
Sbjct: 770  DDAIQTLWDVMVPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYGAALLTSVGDDKDKM 829

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861
              +  D R  +I ++PP VN   ++F      I + L A++ VG      I+ A   + P
Sbjct: 830  AMYLADMRAQHINVLPPDVNASSLEFTAVGEDIRFGLGAVRNVGANAVAEIIRAREENGP 889

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
                  F  +V     N+R++ESL+ AGA D  G+SR  L+            +++N+ N
Sbjct: 890  APDFFTFLDQVSLTVCNKRLIESLIKAGAFDFMGHSRRGLMAVYGQAVDAVIDIKRNQAN 949

Query: 922  KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
              +++F     +   ++ +E+       + S +   E+ +LG Y S HPL   +  L   
Sbjct: 950  GQDDLFGMGDDSQPTQMGVERVVPDDDWDRSTKLAFEREMLGLYVSDHPLRGLEAALEAE 1009

Query: 979  GIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  E V           +  MV    ++ T+ G     VT  +         FP
Sbjct: 1010 SDISVAELVNPEGHHEGRYTVVGMVTQIVRRTTKNGDIWASVTLEDLDASITIACFP 1066


>gi|119717274|ref|YP_924239.1| DNA polymerase III subunit alpha [Nocardioides sp. JS614]
 gi|119537935|gb|ABL82552.1| DNA polymerase III, alpha subunit [Nocardioides sp. JS614]
          Length = 1183

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1063 (33%), Positives = 546/1063 (51%), Gaps = 47/1063 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ YS+L+GA  L+ +  ++A  Q PAIA+TD  NL  A +F  KA   G++P
Sbjct: 8    SFVHLHVHTEYSMLDGASLLDGLFSRVADLQMPAIAMTDHGNLHGAFDFYSKARKHGVKP 67

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPT--------------VPSIVLLVSTAEGYQRLIEL 115
            IIG +  I          + +                      + +     EG   L  L
Sbjct: 68   IIGIEAYITPGTGRGERRRVRWGKGDAAEEGGDDVAGGGAYTHMTMWAENTEGMHNLFRL 127

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
               +  L+      R+    LQ+  ++G+I+ TG  SG I           A +     +
Sbjct: 128  S-SLSSLEGYFYKPRMDREILQQ-HSKGIIVSTGCPSGAIQTRLRLGQWDEAVREAGELQ 185

Query: 176  KLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             +FG + +++ L  H    ++     +++L     +P +ATN+S + + +D +AHD L+ 
Sbjct: 186  DIFGRENVFLELMDHGISIEKRVRDDLLRLGRQLGIPPLATNDSHYNNPDDADAHDALIC 245

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            VA    +S  +R +     Y       +       + +E                     
Sbjct: 246  VASGKRLSDTNRLKFDGGGYYIKSPAEMRQLWTQHDLVEACDNTLAIAERCEVEFVESTG 305

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             ++ +      + E++  R +   G+E R     +      Q+ + R++ EL +I++  +
Sbjct: 306  GYMARADVPAGETEDSWFRKEVWRGIEARYPGDRL-----TQEVKDRVEMELAIISQKGY 360

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GY+L+VADFIQW+K+N I VGPGRGSGAGS+ AYAL+ITD+ PL   L FERFLNP+R 
Sbjct: 361  CGYYLVVADFIQWSKRNGIRVGPGRGSGAGSIAAYALSITDLCPLEHGLFFERFLNPERP 420

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPDFDIDF   RR EVI+YV  KYG +RVAQI TFG L+AKAA++D  R L   ++  D
Sbjct: 421  SMPDFDIDFDDHRRGEVIKYVTEKYGADRVAQIATFGRLKAKAAIKDAARVLDFGFAISD 480

Query: 474  RLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            R+ K +P D     V          +   +   FR    +DP V R+ + +  LEG  R+
Sbjct: 481  RITKALPADVMGKGVALKDIFDPGHKRYGEGGEFRSLHDSDPDVRRIYDTAVGLEGQIRN 540

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HAAG+++   PL  +VP+    +    +TQF+    E  GL+K DFLGL  L +L  
Sbjct: 541  WGVHAAGVIMSSEPLINVVPIMARPQDGAIITQFDYPMCESLGLVKMDFLGLSNLHILDD 600

Query: 585  SLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            ++    A RG +V L  +PFDD  TY L+    TLG+FQL+  GMR  L  MQPD   DI
Sbjct: 601  AVANIEANRGEQVVLEELPFDDRATYELMGRGDTLGVFQLDGGGMRALLRSMQPDQFADI 660

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQGVIIYQEQVMQ 697
             A+ +LYRPGP+  D+   Y  RKNG+E I  IHP     ++P+L ET G+I+YQEQVM 
Sbjct: 661  TAVSALYRPGPMGADSHNKYARRKNGREPIEPIHPALAEALEPVLGETYGLIVYQEQVMA 720

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IAQ+L+G++L  AD LRRAMGKK KEE+DKQ   F SG  + G  +     ++ +L  F+
Sbjct: 721  IAQVLAGFTLGAADNLRRAMGKKKKEELDKQYAGFQSGMLERGFPQAAIDTLWAILLPFS 780

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            DY FNKSH+AAY VI+Y TA++K +YP E++AA +T   D+ +K+  +  + R+  IQ++
Sbjct: 781  DYAFNKSHSAAYGVITYWTAYLKANYPAEYMAALLTSAKDDKDKLAIYLNECRRMKIQVL 840

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876
            PP VN    +F    N I + L A++ VG+     I+ A  +   ++   DF S+V ++ 
Sbjct: 841  PPDVNESAHNFTPVGNDIRFGLTAVRNVGSNVVDGIVAAREEKGRYEDFNDFLSKVPAQV 900

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT--- 933
             N+RV ESL+ AGA D   + R  L    +        +++      +++F         
Sbjct: 901  CNKRVFESLILAGAFDDMKHKRRALHLKHEEAVDRYVGLKRE-DEGQDSLFGGSGSDDVV 959

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---ATI 990
            F   I L      +       E+ +LG Y S HPL   + +L         + +      
Sbjct: 960  FDVSIALPDVDEWDKMTLLSREREMLGLYVSDHPLLGLEHVLANSSDCSIGQLMLDEDRP 1019

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G+++ ++ +V S Q+K T++G     VT  +     +   FP
Sbjct: 1020 DGSSVTISGLVTSVQRKITKRGDAWAMVTVEDLDGAIDVLLFP 1062


>gi|239931832|ref|ZP_04688785.1| DNA polymerase III subunit alpha [Streptomyces ghanaensis ATCC 14672]
 gi|291440200|ref|ZP_06579590.1| DNA polymerase III subunit alpha [Streptomyces ghanaensis ATCC 14672]
 gi|291343095|gb|EFE70051.1| DNA polymerase III subunit alpha [Streptomyces ghanaensis ATCC 14672]
          Length = 1179

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/1068 (31%), Positives = 540/1068 (50%), Gaps = 49/1068 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ +         IA++D  NL  A +F   A  
Sbjct: 1    MSKPP-FTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHSAQK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +      G   L  
Sbjct: 60   AGVTPIIGIEAYVAPESRRNKRKILWGQPHQKRDDVSGSGGYTHKTMWAVNRTGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EG++  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETIAQW-SEGIVASTGCPSGEVQTRLRLGHFDEALKAAADY 178

Query: 175  KKLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG DR ++ L  H     +R    ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIDIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEATAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             +     +S  DR +     Y    S       D  +A +   +  R  + ++       
Sbjct: 239  CIQTGKNLSDPDRFKFDGTGYYLK-STDEMYAIDSSDAWQEGCDNTRLIAEMVDTTGMFE 297

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             R +  + D      E +  R + + G+  R   G         D  +++++E++ I  M
Sbjct: 298  KRDLMPKFDIPEGYTEVSWFREETMRGMHRRFPDG------IPDDRMKQVEYEMDTIISM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAKK  I VGPGRGS AGS+ AYAL ITD+DP+   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIMWAKKQGIAVGPGRGSAAGSIVAYALGITDLDPIPHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G+++AK A++D  R L  PY+ 
Sbjct: 412  RISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYPYAM 471

Query: 472  VDRLCKLIPND---PAHPV------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DR+ K +P D      P+      S    ++    R     +P V ++++ ++ +EGL 
Sbjct: 472  GDRITKAMPADVLGKGIPLSGITDPSHPRYSEAGEVRSMYENEPDVKKVIDTARGVEGLV 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++    +++ VP++      + +TQ++    E  GL+K DFLGL+ LT++
Sbjct: 532  RQMGVHAAGVIMSSETITEHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGLRNLTIM 591

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  +   +G+ +DL  +P DD  T+ LL    TLG+FQ +   MR  L  M+PD  E
Sbjct: 592  DDAVKMVKANKGIDIDLLSLPLDDPTTFDLLQRGDTLGVFQFDGGPMRSLLRLMKPDNFE 651

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695
            DI A+ +LYRPGP+       Y  RKNG+++I  IHP ++  LKE    T G+I+YQEQV
Sbjct: 652  DISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEVLDVTYGLIVYQEQV 711

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+++GYSL EAD+LRR MGKK  EE++K    F +GA KNG S      ++++L  
Sbjct: 712  QKAAQIIAGYSLGEADILRRVMGKKKPEELEKNFVIFQAGARKNGYSDEAIQALWDVLVP 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H+AAY ++SY TA++K ++P E++AA +T   D+ +K   +  + R+  I+
Sbjct: 772  FAGYAFNKAHSAAYGLVSYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNECRRMGIR 831

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            ++PP+VN    +F   GD+ I + L+A++ VGT     I++       + S  D+  +VD
Sbjct: 832  VLPPNVNESEANFAAQGDDVILFGLSAVRNVGTNVVESIIKCRKAKGKYTSFPDYLDKVD 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F      
Sbjct: 892  AVVCNKRTTESLIKAGAFDSMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGMGEE 951

Query: 934  FSD------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
             S        +T       + +     E+ +LG Y S HPL   + +L      G  +  
Sbjct: 952  ESGEPGFGLDVTFTD-DEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGISQLT 1010

Query: 988  --ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1011 GGDFGDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|256838875|ref|ZP_05544385.1| DNA polymerase III alpha subunit [Parabacteroides sp. D13]
 gi|256739794|gb|EEU53118.1| DNA polymerase III alpha subunit [Parabacteroides sp. D13]
          Length = 1267

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1146 (32%), Positives = 574/1146 (50%), Gaps = 134/1146 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA----- 65
            F+HL VH+ YSLL+G  S++ ++DK   D   AIA+TD   +F   EF  K         
Sbjct: 4    FIHLHVHTQYSLLDGQASIDALIDKAYKDGMRAIAVTDHGVMFGIKEFFNKVSKKNSKPL 63

Query: 66   GI----------------------------------------QPIIGCQLDIDMQDNLKM 85
            GI                                        +PIIGC+           
Sbjct: 64   GIIKDSEKELKPLLAKDAPTDEEQQRITELQKQIAEAKASIFKPIIGCECYCARNGRHSK 123

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
                     +   +++L     GY+ LI++VS  +  +      RI    L++   E LI
Sbjct: 124  LASQDDR--SGWHLIVLAKNKNGYKNLIKMVSLSWT-EGFYGRPRIDKELLEKYH-EDLI 179

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-----------R 194
            + +    G I +         AE+ +  FK LFG+  Y+ +QRH  +D           +
Sbjct: 180  ICSACLGGEIPQHIMHGRIDKAEESIKWFKNLFGEDYYLEMQRHETHDPNADCTIFPHQQ 239

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                 +++LA+ H + L+ATN+  F++ +D EAHD L+ ++    +    R R +   ++
Sbjct: 240  EVNKVLIELAHKHNIKLIATNDVHFVNADDAEAHDRLICLSTGKDLDDPKRMRYSKQEWM 299

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE-------- 306
            K  +EM +IF+D+PEAL NT+EIA +  F      PI+P F   E    ++         
Sbjct: 300  KTTAEMNTIFADIPEALSNTLEIADKIEFYSIDSGPIMPTFAIPEEFGTEESYRQKLTEH 359

Query: 307  ---------------------------------------EENELRNKAVAGLEVRLAQGA 327
                                                   E + L      G +       
Sbjct: 360  DLFEEFTRDENGNVVLSEEEAHSKIKKLGGYDKLYRIKLEADYLAKLTYDGAKELYGDPL 419

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVT 386
                    + ++RL+FEL+++  M F GYFLIV DFI+ A++   + VGPGRGS AGS  
Sbjct: 420  D------DEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSAV 473

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AY L IT IDP+++ LLFERFLNPDR+S+PD D DF  D R EV+R+V  KYG ERVA I
Sbjct: 474  AYCLGITKIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAHI 533

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP---NDPAHPVSLQAIADDSRFREARL 503
            IT+G++  K+A++DV R  ++P S+ +RL KL+P    D        AI      +EA  
Sbjct: 534  ITYGTMATKSAIKDVARVQKLPLSESNRLAKLVPDKIPDMKKFKLGDAIKYVPELKEAAN 593

Query: 504  -ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQF 558
              DP     L+ +Q LEG  R+   HA G++IG   +S +VP+     +D   ++ VTQ+
Sbjct: 594  GNDPLARDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQY 653

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGT 617
                IE+ GLIK DFLGLKTL++++++++ +        D+  I  +D +TY L     T
Sbjct: 654  EGSVIEETGLIKMDFLGLKTLSIIKEAIENVKLTTGHDLDIDHISLEDPKTYKLYCDGKT 713

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
             G FQ ES+GM++ L+ +QP   ED+IA+ +LYRPGP+D I  +  RK GKE+I    P+
Sbjct: 714  TGTFQFESAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIPV 773

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+ E+M+  K +F++G  
Sbjct: 774  MERYLKDTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGGQ 833

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
             NG  +     I+    KFA Y FNKSHA  Y+ ++YQTA++K ++P E++AA ++  + 
Sbjct: 834  ANGYKEETLNKIWSDWEKFASYAFNKSHATCYSWVAYQTAYLKANFPSEYMAAVLSRSLS 893

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEA 856
            N+  I KF  + +   IQ++ P VN   + F V  N+ I + L A+KGVG +  ++I+E 
Sbjct: 894  NITDITKFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGESAVQNIIEE 953

Query: 857  S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNI 908
               + P+ S+ DF  RV+    N++ +ES+  AGA D FG  R Q           LD +
Sbjct: 954  RKKNGPYKSIFDFVERVNLTACNKKNIESMALAGAFDNFGIQREQFFTDSGKGELFLDTL 1013

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +Y    + +++    ++F  +      K  + +    +   R   E+ ++G Y S HPL
Sbjct: 1014 VRYGNKYQMDKSTAVNSLFGGDALIAIAKPEIPQCERWSDLERLNKEKELVGIYLSAHPL 1073

Query: 969  DVYKPILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            D Y+ IL+ +   G  E       +G  + L  +V   ++  T+ G   G +   +    
Sbjct: 1074 DEYRIILKYVCNTGMVELNERETLQGREVLLGGIVTGFREGMTKNGKPYGILKIEDFTGS 1133

Query: 1027 YEANFF 1032
             E   F
Sbjct: 1134 GEIPLF 1139


>gi|150010065|ref|YP_001304808.1| DNA polymerase III subunit alpha [Parabacteroides distasonis ATCC
            8503]
 gi|262382633|ref|ZP_06075770.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_33B]
 gi|298374425|ref|ZP_06984383.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_19]
 gi|149938489|gb|ABR45186.1| DNA polymerase III alpha subunit [Parabacteroides distasonis ATCC
            8503]
 gi|262295511|gb|EEY83442.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_33B]
 gi|298268793|gb|EFI10448.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_19]
          Length = 1267

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1146 (32%), Positives = 574/1146 (50%), Gaps = 134/1146 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA----- 65
            F+HL VH+ YSLL+G  S++ ++DK   D   AIA+TD   +F   EF  K         
Sbjct: 4    FIHLHVHTQYSLLDGQASIDALIDKAYKDGMRAIAVTDHGVMFGIKEFFNKVSKKNSKPL 63

Query: 66   GI----------------------------------------QPIIGCQLDIDMQDNLKM 85
            GI                                        +PIIGC+           
Sbjct: 64   GIIKDSEKELKPLLAKDAPTDEEQQRITELQKQIAEAKASIFKPIIGCECYCARNGRHSK 123

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
                     +   +++L     GY+ LI++VS  +  +      RI    L++   E LI
Sbjct: 124  LASQDDR--SGWHLIVLAKNKNGYKNLIKMVSLSWT-EGFYGRPRIDKELLEKYH-EDLI 179

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-----------R 194
            + +    G I +         AE+ +  FK LFG+  Y+ +QRH  +D           +
Sbjct: 180  ICSACLGGEIPQHIMHGRIDKAEESIKWFKNLFGEDYYLEMQRHETHDPNADCTIFPHQQ 239

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                 +++LA+ H + L+ATN+  F++ +D EAHD L+ ++    +    R R +   ++
Sbjct: 240  EVNKVLIELAHKHNIKLIATNDVHFVNADDAEAHDRLICLSTGKDLDDPKRMRYSKQEWM 299

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE-------- 306
            K  +EM +IF+D+PEAL NT+EIA +  F      PI+P F   E    ++         
Sbjct: 300  KTTAEMNTIFADIPEALSNTLEIADKIEFYSIDSGPIMPTFAIPEEFGTEESYRQKLTEH 359

Query: 307  ---------------------------------------EENELRNKAVAGLEVRLAQGA 327
                                                   E + L      G +       
Sbjct: 360  DLFEEFTRDENGNVVLSEEEAHSKIKKLGGYDKLYRIKLEADYLAKLTYDGAKELYGDPL 419

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVT 386
                    + ++RL+FEL+++  M F GYFLIV DFI+ A++   + VGPGRGS AGS  
Sbjct: 420  ------NDEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSAV 473

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AY L IT IDP+++ LLFERFLNPDR+S+PD D DF  D R EV+R+V  KYG ERVA I
Sbjct: 474  AYCLGITKIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAHI 533

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP---NDPAHPVSLQAIADDSRFREARL 503
            IT+G++  K+A++DV R  ++P S+ +RL KL+P    D        AI      +EA  
Sbjct: 534  ITYGTMATKSAIKDVARVQKLPLSESNRLAKLVPDKIPDMKKFKLGDAIKYVPELKEAAN 593

Query: 504  -ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQF 558
              DP     L+ +Q LEG  R+   HA G++IG   +S +VP+     +D   ++ VTQ+
Sbjct: 594  GNDPLARDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQY 653

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGT 617
                IE+ GLIK DFLGLKTL++++++++ +        D+  I  +D +TY L     T
Sbjct: 654  EGSVIEETGLIKMDFLGLKTLSIIKEAIENVKLTTGHDLDIDHISLEDPKTYKLYCDGKT 713

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
             G FQ ES+GM++ L+ +QP   ED+IA+ +LYRPGP+D I  +  RK GKE+I    P+
Sbjct: 714  TGTFQFESAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIPV 773

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+ E+M+  K +F++G  
Sbjct: 774  MERYLKDTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGGQ 833

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
             NG  +     I+    KFA Y FNKSHA  Y+ ++YQTA++K ++P E++AA ++  + 
Sbjct: 834  ANGYKEETLNKIWSDWEKFASYAFNKSHATCYSWVAYQTAYLKANFPSEYMAAVLSRSLS 893

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEA 856
            N+  I KF  + +   IQ++ P VN   + F V  N+ I + L A+KGVG +  ++I+E 
Sbjct: 894  NITDITKFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGESAVQNIIEE 953

Query: 857  S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNI 908
               + P+ S+ DF  RV+    N++ +ES+  AGA D FG  R Q           LD +
Sbjct: 954  RKKNGPYKSIFDFVERVNLTACNKKNIESMALAGAFDNFGIQREQFFTDSGKGELFLDTL 1013

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +Y    + +++    ++F  +      K  + +    +   R   E+ ++G Y S HPL
Sbjct: 1014 VRYGNKYQMDKSTAVNSLFGGDALIAIAKPEIPQCERWSDLERLNKEKELVGIYLSAHPL 1073

Query: 969  DVYKPILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            D Y+ IL+ +   G  E       +G  + L  +V   ++  T+ G   G +   +    
Sbjct: 1074 DEYRIILKYVCNTGMVELNERETLQGREVLLGGIVTGFREGMTKNGKPYGILKIEDFTGS 1133

Query: 1027 YEANFF 1032
             E   F
Sbjct: 1134 GEIPLF 1139


>gi|326779885|ref|ZP_08239150.1| DNA polymerase III, alpha subunit [Streptomyces cf. griseus
            XylebKG-1]
 gi|326660218|gb|EGE45064.1| DNA polymerase III, alpha subunit [Streptomyces cf. griseus
            XylebKG-1]
          Length = 1178

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/1066 (30%), Positives = 530/1066 (49%), Gaps = 46/1066 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ +         IA+TD  NL  A +F   A  
Sbjct: 1    MTKPP-FTHLHVHTQYSLLDGAARLKDMFEAANEMGMTHIAMTDHGNLHGAYDFFHSAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            A + PIIG +  +  +                    +         +  S   G   L  
Sbjct: 60   ADVTPIIGIEAYVAPESRKHKRKVQWGQPHQKRDDVSGSGGYTHKTIWASNKTGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EGLI  TG  SG +           A +    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDY 178

Query: 175  KKLFGDR-LYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            K +FG+   ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  KDIFGEGKYFLELMDHGIEIERRVRDGLLEIGKKLNIPPLVTNDSHYTYAHEATAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             +     +S  DR R     Y    +       D  +A +         +  +       
Sbjct: 239  CIQTGKNLSDPDRFRFDGTGYYLK-TTDEMYAVDSSDAWQEGCANTLLVAQQIDTTGMFE 297

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             + +  + +      E    + +   G+  R   G         D ++++++E+++I +M
Sbjct: 298  AKNLMPKFEIPDGFTEVTWFQEEVRVGMARRFPNGV------PDDRQKQVEYEMDIIIQM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+ 
Sbjct: 412  RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471

Query: 472  VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DRL K +P D     +             ++    R    ++P V ++++ ++ +EGL 
Sbjct: 472  GDRLTKAMPADVLGKGIDLNGITDPKHPRYSEAGEIRGMYESEPDVKKVIDTAKGVEGLV 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ LT++
Sbjct: 532  RQMGVHAAGVIMSSEPIVDHAPVWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  +   +G+ +++  +P DD +TY LL    TLG+FQ +   MR  L  MQPD  E
Sbjct: 592  DDAIKMVKSNKGIDLEMLALPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRQMQPDNFE 651

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695
            DI A+ +LYRPGP+       Y  RKNG+++I  IHP ++  LKE    T G+I+YQEQV
Sbjct: 652  DISAVSALYRPGPMGMNSHTNYAERKNGRQEITPIHPELEEPLKEVLGLTYGLIVYQEQV 711

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+++GYSL EAD+LRR MGKK  EE+ K    F  GA + G S     +++++L  
Sbjct: 712  QKAAQIVAGYSLGEADILRRVMGKKKPEELAKNFVLFEKGAKEKGFSDAAIKSLWDVLVP 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+  I+
Sbjct: 772  FAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMGIK 831

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            ++PP+VN    +F   GD+ I + L AI+ VG      I+ +      + +  DF  +V+
Sbjct: 832  VLPPNVNESLSNFAAQGDDVILFGLTAIRNVGQNVVDSIIRSRKAKGKYSTFPDFLDKVE 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +   N+R +ESL+ AGA D  G++R  L+   + +      V++       ++F   +  
Sbjct: 892  AVVCNKRTVESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVQVKRKEAEGQFDLFGGGEEE 951

Query: 934  FSDKITLEKFS----VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-- 987
              +                +     E+ +LG Y S HPL   + +L         + +  
Sbjct: 952  SGEPGFGLDVEFSDIEWEKAYLLAQEREMLGLYVSDHPLFGLEHVLSDKADSSISQLMGG 1011

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1012 DYGDGAIVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1057


>gi|115380319|ref|ZP_01467326.1| DNA polymerase III alpha subunit [Stigmatella aurantiaca DW4/3-1]
 gi|115362676|gb|EAU61904.1| DNA polymerase III alpha subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 1058

 Score =  721 bits (1860), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/1006 (39%), Positives = 573/1006 (56%), Gaps = 37/1006 (3%)

Query: 52   LFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
            +F+ ++F +KA  AGI+PIIG +  +          +          ++L+   AEGY  
Sbjct: 1    MFATIDFYKKAKDAGIKPIIGMEAYVA-----GTKGREDRSEKVAHHLILVAQNAEGYAN 55

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L  L S  Y+ D      RI    L +  ++GL  LT    G +  A F      A +  
Sbjct: 56   LRYLSSTAYM-DGFYYHPRIDKKVLAQ-HSKGLFALTACLGGEVTSACFRGDMDHARRAA 113

Query: 172  LTFKKLF-GDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
              +K +F     ++ +Q +   ++ +    + QL+   ++PL AT ++ ++  ED  AH+
Sbjct: 114  TEYKDIFEPGHFFLEVQSNGIPEQDKANENLKQLSRDLDIPLCATADAHYIKREDARAHE 173

Query: 230  VLMAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            +LM +A    +S   R R + D  Y+ +  EM+  F D PEA+ NT  IA +C+  L++ 
Sbjct: 174  LLMCIASGKTLSDGKRLRHSTDKLYVTSPQEMLEFFRDTPEAVHNTQVIADQCNLELKLG 233

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLDFELNV 347
             P+LP F   +        ++ +   A  GL  R  +   A      + YR RL+ ELNV
Sbjct: 234  KPMLPTFKVPD----SHTPDSFMAELAFEGLHERFKELHHAGAKFDPEMYRARLNLELNV 289

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I +M FSGYFLIV DFI WAKK NIPVGPGRGSGAGS+ AYAL ITD+DPL ++LLFERF
Sbjct: 290  IQKMGFSGYFLIVQDFINWAKKANIPVGPGRGSGAGSLVAYALRITDLDPLPYNLLFERF 349

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+SMPDFDIDFCQDRRDEVI+YV  KYG   V QIITFGSL+AK+ LRDV R   +
Sbjct: 350  LNPERVSMPDFDIDFCQDRRDEVIKYVSQKYGEMNVGQIITFGSLKAKSVLRDVCRVFGL 409

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS----------VDRLLEISQK 517
            P+S+ DR+ KL+P      +    I  ++R +E      +             +LEI+  
Sbjct: 410  PFSEGDRIAKLVPEVLGITLKEA-IEQEARLKEMMEKPSNVGEVEGKPVTTKDVLEIALA 468

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL+R    HAAG+VI D+PL + VP+Y+       +TQF    +E AGL+KFDFLGLK
Sbjct: 469  LEGLHRQPGMHAAGVVIADKPLWEFVPVYQPPGEKTLITQFAKDEVEAAGLVKFDFLGLK 528

Query: 578  TLTLLQKSLDFLAQRGVKVD---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            TLT++Q +LD + +            IP  D   + L+    T G+FQ+ESSG  + +  
Sbjct: 529  TLTVIQNALDLINRNPPNGKKLERQDIPLHDELMWKLMADGDTAGVFQMESSGFTEMVMK 588

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            ++P C ED+IA  +LYRPGP+D+ +V  + NRK+G+E +   HP ++P+LK+T GVI+YQ
Sbjct: 589  LKPSCFEDVIAAGALYRPGPLDSGMVDVFINRKHGREPVTYPHPALEPVLKDTYGVIVYQ 648

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQI+Q+L GY+L  AD+LRRAMGKK  E M  ++  F+ G  KN +   +A  IF+L
Sbjct: 649  EQVMQISQVLGGYTLGRADLLRRAMGKKKAEVMQAERAGFLEGCKKNNVDLKVAGEIFDL 708

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA+YGFNKSH+AAY +I+  TAW+K H+PVEF+AA +T E DN +K+ +   +AR+ 
Sbjct: 709  MEKFAEYGFNKSHSAAYGLITIHTAWLKAHFPVEFMAALLTSEKDNTDKVVRHIGEAREA 768

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
              Q++PP VN   + F   D +I + L AI GVG      I+EA  D  F  L DFC RV
Sbjct: 769  GHQVLPPDVNQSDMAFGAVDGKIRFGLGAINGVGEGAIESIVEARKDGFFKGLFDFCERV 828

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            DS+++N++VLE+LV AGA D     R QL ++++         +K++     ++F    G
Sbjct: 829  DSRRVNKKVLEALVKAGAFDFEKRPRRQLFETIERAMNRGSASQKDKAAGQSSLFGMLAG 888

Query: 933  TFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              +      K    +        R   E+  +GFY SGHPL  Y   L++   +      
Sbjct: 889  PAAGGGGGMKDDYAQVEEWPEKERLAFEKDAIGFYVSGHPLHQYDKELKRYA-RPVTSVQ 947

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               R   I +  +V + +++ T+ G R+ WVT  + +   E   FP
Sbjct: 948  RARRDEKITVGGIVAALRERPTKTGKRMAWVTLEDLSGSIELVCFP 993


>gi|325286607|ref|YP_004262397.1| DNA polymerase III subunit alpha [Cellulophaga lytica DSM 7489]
 gi|324322061|gb|ADY29526.1| DNA polymerase III, alpha subunit [Cellulophaga lytica DSM 7489]
          Length = 1479

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/1105 (31%), Positives = 550/1105 (49%), Gaps = 94/1105 (8%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-------- 58
            +S  F HL  H+ +S+L+  +S+ +++   A +  PA+A+TD  N+  A  F        
Sbjct: 257  ESAEFSHLHNHTQFSILQSTISVPDLIKATAKNNMPAVAMTDHANMMGAFHFVNGVLNHN 316

Query: 59   -------------SQKACAA----------------GIQPIIGCQLDIDMQDNLKMTNQG 89
                          +                      I PIIGC+  +         +  
Sbjct: 317  KGVKSRNDANEIRYEATQENRLEEGEEPLHEFIPEKEITPIIGCEFQVCED------HTN 370

Query: 90   KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG 149
            K+       IV L     GY  L ++ S  + +D      RI    +++   E LI+LTG
Sbjct: 371  KSQKDNGYQIVFLAKNKNGYHNLAKMSSIAF-VDGKYYVPRIDKKIIEQY-KEDLIVLTG 428

Query: 150  GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHE 208
               G +           AE  LL +K+ FGD LY+ + RH   D  R +Q +++ A  H 
Sbjct: 429  NLYGEVPSLVLNVGENQAEDALLWWKEQFGDDLYMEIMRHGQEDEDRVNQVLIKFAKKHN 488

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMV 261
            + LVATNN+ ++ +E+  AHD+L+ V      S                ++Y K+  EM 
Sbjct: 489  VKLVATNNTYYVEKENAYAHDILLCVKDGEKQSTPIGRGRGYRYGLPNQEYYFKSSDEMK 548

Query: 262  SIFSDLPEALENTVEIARRCSFI--------LQVHAPILPRFIEKECDDIQKEEENELRN 313
             +F D+PEA+ N  E+  +                 P    F E + D  ++ E   LR+
Sbjct: 549  ELFKDIPEAITNIQEVVDKIETFTLARDVLLPAFDIPEEFVFEEDKIDGGKRGENKFLRH 608

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
                G +       I  G    +  +RLDFEL VI +  + GYFLIV DFI+ A+K ++ 
Sbjct: 609  LTYEGAK-------IRYGEITPEIDERLDFELKVIEKTGYPGYFLIVEDFIRAARKMDVS 661

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS  AY L IT++DP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ Y
Sbjct: 662  VGPGRGSAAGSAVAYCLWITNLDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDY 721

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA--------- 484
            V +KYG  +VAQIIT+G++ AK+++RD  RAL +P    DR+ KLIPN            
Sbjct: 722  VIDKYGSNQVAQIITYGTMAAKSSIRDTARALDLPLGDADRMAKLIPNMSKLKKIIGVDE 781

Query: 485  ----HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                   + + +A  +   E    D      L  +  LEG  R+   HA G++I    ++
Sbjct: 782  KTLKSKFNSEELAKINELLEISEGDDLESETLNQAYVLEGSVRNTGIHACGVIITPDDIT 841

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLS 599
            + VP+     SD+  TQF+   +E AGL+K DFLGLKTLTL++ ++  +  + GV++D  
Sbjct: 842  KFVPVALAKDSDMYCTQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKIVKAKHGVELDPE 901

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
              P DD +TY L     T+G+FQ ES GM++ +  ++P    D+IA+ +LYRPGP++ I 
Sbjct: 902  NFPLDDQKTYELFQRGETVGVFQYESPGMQKHMRSLKPTVFADLIAMNALYRPGPMEYIP 961

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RK+G E+I+      +  L ET G+ +YQEQVM ++Q L+ ++  EADVLR+AMGK
Sbjct: 962  SFIARKHGTEEIIYDLDACEEYLAETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGK 1021

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K K  +DK K +FI  AS  G +      I++    FA Y FNKSH+  YA I+YQTA+ 
Sbjct: 1022 KQKHVLDKMKPKFIEQASAKGHAVDKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYC 1081

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYS 838
            K HYP E++AA ++  M++++ +  F ++ ++  ++++ P VN     F V D   + + 
Sbjct: 1082 KAHYPAEYMAAVLSNNMNDIKTVTFFMEECKRMGLEVLGPDVNESYYKFAVNDAGAVRFG 1141

Query: 839  LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-Y 896
            + A+KGVG      I+E    D P+ S+ D   R+D +  N+R  E+L  AG  D FG  
Sbjct: 1142 MGAVKGVGRGAVETIVENRKKDGPYKSVFDLAKRIDLRAANKRAFENLTLAGGFDSFGDT 1201

Query: 897  SRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
             R Q L         L+ + KY    ++++ +   ++F         +  +       + 
Sbjct: 1202 HRAQYLHDEGDGITFLEKVMKYGSKFQESQNSSQVSLFGEASDVQIPEPVVPPCEEWGTM 1261

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQK 1007
             +   E+ V+G Y SGHPLD +K  ++     G        +     + +A ++   Q +
Sbjct: 1262 EKLRKEKEVVGIYISGHPLDDFKSEIKSFCNSGIAAVHNMEQYVNKELSIAGVITDVQHR 1321

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++ G      +  +    Y+   F
Sbjct: 1322 VSKNGKGWAMFSMEDYTDSYDFRIF 1346


>gi|295136252|ref|YP_003586928.1| DNA polymerase III subunit alpha-1 [Zunongwangia profunda SM-A87]
 gi|294984267|gb|ADF54732.1| DNA polymerase III subunit alpha-1 [Zunongwangia profunda SM-A87]
          Length = 1462

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/1085 (30%), Positives = 538/1085 (49%), Gaps = 78/1085 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--------- 61
            F HL  HS +S+L+  +S+ ++++       PA+A+TD  N+  A  F ++         
Sbjct: 262  FAHLHNHSQFSVLQSTISIADLVNAAGEQNMPAVALTDHANMMGAFHFVKEVGAYNKNVQ 321

Query: 62   ------------ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
                        A A  ++ IIGC+  +         +  K+       +V+L    +GY
Sbjct: 322  AKNEEAEANGEPAQAKELKAIIGCEFFVC------ENHTDKSRKDNGYQVVMLAKNKKGY 375

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L ++ S+ Y  D      RI    +++   E +I+LTG   G +         + AE+
Sbjct: 376  HNLAKMSSKAYT-DGFYYVPRIDKEVVKQY-KEDVIVLTGNLYGEVPSKILNVGEKQAEE 433

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             LL +K+ FGD LY+ + RH   D  R +Q +++ +  H++ L+ATNN+ +  ++D  AH
Sbjct: 434  ALLWWKEEFGDDLYIEIMRHNQEDENRVNQVLIEFSKKHDIKLIATNNTYYWKKDDANAH 493

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            D+L+ V      +          + L N+        ++    ++  E       I+   
Sbjct: 494  DILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKTAEEMKNLFKDLPEAISNIKEIVDKI 553

Query: 289  APILPRFIE---------------KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
             P                       + D  ++ E   L++    G E          G  
Sbjct: 554  EPFELARDVLLPAFTIPEEFLVEEDKVDGGKRGENAYLKHITYKGAEE-------RYGEI 606

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
                ++RLDFEL+VI    + GYFLIV DFI+ A+  ++ VGPGRGS AGS  AY L IT
Sbjct: 607  TPAIKERLDFELSVIENTGYPGYFLIVEDFIREARNLDVSVGPGRGSAAGSAVAYCLGIT 666

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            +IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV  KYG  +VAQIIT+G++ 
Sbjct: 667  NIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIGKYGANQVAQIITYGTMA 726

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA------------IADDSRFREA 501
            AK+++RD  R L +P S  DR+ KLIPN     +                +   +     
Sbjct: 727  AKSSIRDTARVLDLPLSDADRIAKLIPNTKLGKIFGMDEKALKAKFRSEEVDSINELLNI 786

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
               D    + +  ++ LEG  R+   HA G++I    ++  VP+     SDL VTQF+  
Sbjct: 787  AEGDDLEAQTVNQARVLEGSVRNTGIHACGVIITPSDITNYVPVSVAKDSDLYVTQFDNS 846

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGI 620
             +E AGL+K DFLGLKTLTL++ ++  +  R          P DD ETY L     T+GI
Sbjct: 847  VVESAGLLKMDFLGLKTLTLIKDTIKIVKGRHNIDLVPDEFPLDDEETYKLFQRGETVGI 906

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
            FQ ES GM++ ++ ++P   +D+IA+ +LYRPGP++ I  +  RK+G E+I    P ++ 
Sbjct: 907  FQYESPGMQKHMQALKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGDEEISYDLPDMEE 966

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
             LKET G+ +YQEQVM ++Q L+G++  EAD+LR+AMGKK+   + + K +FI G    G
Sbjct: 967  YLKETYGITVYQEQVMLLSQKLAGFTKGEADMLRKAMGKKLVALLAQLKPKFIGGGEAKG 1026

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
                +   I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA ++  M++++
Sbjct: 1027 HPTEVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNMNDIK 1086

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASAD 859
            ++  F ++ ++  + ++ P VN     F V  +  + + + AIKGVG      I+E    
Sbjct: 1087 QVTFFMEECKRMKLNVLGPDVNESYYKFSVNKDYAVRFGMGAIKGVGAGAVATIVENRKG 1146

Query: 860  --KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQ 909
               P+ S+ D   R+D +  N++  E+L  AG  DCF    R Q           L+ + 
Sbjct: 1147 EAGPYRSIFDMAKRIDLRAANKKAFENLALAGGFDCFKETHRAQYFHDEGDGMSFLEKVV 1206

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            K+A   ++N  +   ++F         + ++       +  +   E+ V+G Y SGHPLD
Sbjct: 1207 KFAAKFQENENSSQVSLFGEASEVQIPEPSVPPCEEWGTMEKLRREKEVVGIYISGHPLD 1266

Query: 970  VYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             +K  ++        +  A  +     I    ++   Q + ++ G      T  +  + Y
Sbjct: 1267 DFKKEIQYFCNGSLSDFRALEKVVNREISFGGVISDVQHRMSKMGKGWAMFTVEDYNESY 1326

Query: 1028 EANFF 1032
            E   F
Sbjct: 1327 EFRMF 1331


>gi|46202448|ref|ZP_00208519.1| COG0587: DNA polymerase III, alpha subunit [Magnetospirillum
            magnetotacticum MS-1]
          Length = 1115

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 478/1008 (47%), Positives = 666/1008 (66%), Gaps = 31/1008 (3%)

Query: 44   IAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
            + I+DT NLF ALEFS     AGIQPI+G Q+ I  +D    +  G+ P P    +VLL 
Sbjct: 1    MGISDTGNLFGALEFSTSCSDAGIQPIVGAQIAIRREDG-GPSKDGRKPEPDT--LVLLC 57

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
                GY  L++LVS+ +L     ++ ++ L  L E  ++GLI+LTGG +GP+ R      
Sbjct: 58   QNEAGYLNLLKLVSKAFLETDAGETPQVTLHDL-ETRSDGLIILTGGPAGPVGRLLADGQ 116

Query: 164  SQVAEKRLLTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSE 222
            ++ AE  L    + F  R YV + RH+   +   E  +V LAY H+LPLVATN + F   
Sbjct: 117  AEKAEIVLARLARAFAGRCYVEIMRHKLEVEDRIEPMLVSLAYKHDLPLVATNEAFFADR 176

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
              YEAHD L+ +A    +SQ +R R+TP+HY K+  EM ++F+DLPEA +NT+ IARRC+
Sbjct: 177  GMYEAHDALVCIAEGAYISQDERRRLTPEHYFKSPQEMRALFADLPEACDNTLVIARRCA 236

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD------ 336
            F          + I          E   LR K + GL+ RLA+     G    +      
Sbjct: 237  F-----GVAKRKPILPPYRMDGLTEAEVLRKKTLEGLDDRLAKHVFKDGMTDDEKDHAAK 291

Query: 337  -YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
             YR+R++FEL VI +M F GYFLIV+DFIQW+K + IPVGPGRGSGAGS  A+ALTITD+
Sbjct: 292  PYRERIEFELGVIEQMGFPGYFLIVSDFIQWSKAHEIPVGPGRGSGAGSAVAWALTITDL 351

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DPLR+ LLFERFLNP+R+SMPDFDIDFCQDRR+E IRYVQ KYG+ +VAQIITFG LQA+
Sbjct: 352  DPLRWGLLFERFLNPERVSMPDFDIDFCQDRREETIRYVQAKYGYSQVAQIITFGKLQAR 411

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEI 514
            A LRDVGR LQMPY QVDR+CKL+PN+PA+P++  QA+ ++   +E +  D +V  L+++
Sbjct: 412  AVLRDVGRVLQMPYGQVDRICKLVPNNPANPMTLEQALENEPLLKEQKERDETVSHLIDL 471

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            + KLEGLYRHASTHAAG+VIGDRPL +LVP+YRD RSD+PVTQFNMKW+E AGL+KFDFL
Sbjct: 472  AMKLEGLYRHASTHAAGVVIGDRPLDELVPLYRDPRSDMPVTQFNMKWVESAGLVKFDFL 531

Query: 575  GLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GLKTLT++  ++  + + +G+ +DLS IP DD ++Y LL+     G+FQLESSGMR  L 
Sbjct: 532  GLKTLTVMVTAVKHVKKSKGIDIDLSAIPLDDAKSYELLSRGDAAGVFQLESSGMRDVLR 591

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
             M P+ +ED+IA+V+LYRPGP+D I  Y   K+GKE+   +HPL++P+LKET G+++YQE
Sbjct: 592  KMGPNRLEDLIAVVALYRPGPMDQIPRYIACKHGKEEPDYMHPLLEPILKETFGIMVYQE 651

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQIAQ+LSGYSL  AD+LRRAMGKK +EEMD+Q+ +F+ GA+   +    A  IF+ +
Sbjct: 652  QVMQIAQVLSGYSLGGADLLRRAMGKKDREEMDRQRAKFVEGATARAVDGGQASMIFDKV 711

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
            AKFA+YGFNKSHAAAYA+I+YQTAW+K +YP EF+AA+MT EM N +K+  F Q+  +  
Sbjct: 712  AKFAEYGFNKSHAAAYALIAYQTAWLKANYPAEFMAATMTYEMSNTDKLNSFRQELDRLG 771

Query: 814  IQIMPPSVNTPCVDFKVG-----DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLED 867
            I+++PP +N+    F V       + + Y+LAA+K VG    + ++E       F  + D
Sbjct: 772  IKLLPPDINSSQPTFSVELLPDGGSAVRYALAALKNVGEAAMKSLVEERDRGGRFKDMGD 831

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F +R+DSK LNRR LE++V AG  D    +R +L ++ D + +YA    ++R +   ++ 
Sbjct: 832  FAARMDSKVLNRRQLENMVKAGVFDSIDKNRGRLFKNADTLCRYAAQAAEDRQSSQMSLL 891

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                G+ +  + LE     +   +   E   +GFY S HPLD Y   ++++ +    E  
Sbjct: 892  G---GSNAPTLKLESGPDWSPHEKLNQEFEAVGFYLSAHPLDAYAKSMKRLNVLKIAELP 948

Query: 988  ATIR---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++      +RLA  ++SKQ++ + KGSR  ++ FS+ +  +E   F
Sbjct: 949  RHLQSGGKGRVRLAGSLLSKQERVSAKGSRYAFLQFSDASGMFEVTCF 996


>gi|218264823|ref|ZP_03478511.1| hypothetical protein PRABACTJOHN_04221 [Parabacteroides johnsonii DSM
            18315]
 gi|218221765|gb|EEC94415.1| hypothetical protein PRABACTJOHN_04221 [Parabacteroides johnsonii DSM
            18315]
          Length = 1266

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1146 (32%), Positives = 574/1146 (50%), Gaps = 134/1146 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-ACAAG--- 66
            F+HL VH+ YSLL+G  S++ ++DK   D  PAIA+TD   +F   EF  K +   G   
Sbjct: 4    FIHLHVHTQYSLLDGQASIDALIDKAQKDGMPAIAVTDHGVMFGIKEFFNKVSKKNGKPL 63

Query: 67   -----------------------------------------IQPIIGCQLDIDMQDNLKM 85
                                                      +PI GC+           
Sbjct: 64   GAIKDYEKELKELKSKTELTSEEQARLEEIPAKIEEEKKKIFKPIFGCECYCARNGRHSK 123

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
                     +   +++L     GY+ LI++VS  +  +      RI    L++   E LI
Sbjct: 124  LAS--QNDRSGWHLIVLAKNLNGYKNLIKMVSLSWT-EGFYGRPRIDKELLEKYH-EDLI 179

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR--------- 196
            + +    G I +         AE+ +L FK LFG+  Y+ +QRH  +D            
Sbjct: 180  ICSACIGGEIPQHILNGRMDKAEESVLWFKNLFGEDYYLEIQRHETHDPNAAQDVYPHQV 239

Query: 197  --ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                 +++LA  H++ ++ATN+  F++ ED EAHD L+ ++    +   +R R T   ++
Sbjct: 240  TANKVILELARKHDIKVIATNDVHFVNAEDAEAHDRLICLSTGKDLDDPNRMRYTKQEWM 299

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE-------- 306
            K  +EM ++FSD+PEAL NT+EIA +  F    H PI+P F   E    ++         
Sbjct: 300  KTTAEMNTLFSDIPEALSNTLEIADKVEFYSIDHGPIMPTFAIPEDFGTEEGYRRKFTEQ 359

Query: 307  ---------------------------------------EENELRNKAVAGLEVRLAQGA 327
                                                   E + L+     G ++      
Sbjct: 360  DLFDEFTRDENGNVVLSEEAAHDKIKKLGGYEKLYRIKLEADYLKKITYDGAKICYGD-- 417

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVT 386
                    + ++RL+FEL+++  M F GYFLIV DFI+ A++   + VGPGRGS AGS  
Sbjct: 418  ----ELNDEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSAV 473

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AY L IT IDP+++ LLFERFLNPDR+S+PD D DF  D R EV+R+V  KYG ERVA I
Sbjct: 474  AYCLGITRIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAHI 533

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP---NDPAHPVSLQAIADDSRFREARL 503
            IT+G++  K+A++DV R  ++P ++ +RL KL+P    D        AI      +EA  
Sbjct: 534  ITYGTMATKSAIKDVARVQKLPLAESNRLAKLVPDKIPDMKKFKLKDAINYVPELKEAAT 593

Query: 504  -ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQF 558
              DP     L+ +Q LEG  R+   HA G++IG   +S +VP+     +D   ++ VTQ+
Sbjct: 594  GNDPLARDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQY 653

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGT 617
                IE+ GLIK DFLGLKTL++++++++ +        D+  I  +D  TY L     T
Sbjct: 654  EGSVIEETGLIKMDFLGLKTLSIIKEAIENIRLTTGHELDIDHISLEDPATYKLYCDGKT 713

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
             G FQ ES+GM++ L+ +QP   ED+IA+ +LYRPGP+D I  +  RK GKE+I    P+
Sbjct: 714  TGTFQFESAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIPV 773

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+ E+M+  K +F++G  
Sbjct: 774  MERYLKDTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGGK 833

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
             NG  +     I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA ++  + 
Sbjct: 834  TNGYKEETLQKIWSDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPSEYMAAVLSRSLS 893

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIM-E 855
            N+  I KF  + +   IQ++ P VN   + F V  N+ I + L A+KGVG    ++I+ E
Sbjct: 894  NIVDITKFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGEAAVQNIIEE 953

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNI 908
               + P+  + DF  RV     N++ +ESL  AGA D FG  R Q           L+ +
Sbjct: 954  RRKNGPYKDIFDFVERVSLTACNKKNIESLALAGAFDNFGIQREQFFAETGKGEIFLETL 1013

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +Y    + +++    ++F  +      K  + K    +   R   E+ ++G Y S HPL
Sbjct: 1014 VRYGNKFQTDKSTATNSLFGGDAFIAIAKPEIPKCERWSDLERLNKEKELVGIYLSAHPL 1073

Query: 969  DVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            D Y+ IL  +   G  E        G ++    +V   ++  T+KG+  G +   +    
Sbjct: 1074 DEYRIILTYVCNTGMAEINDKENLVGKDLLFGGIVTDFREGMTKKGNPYGIIKIEDFTGS 1133

Query: 1027 YEANFF 1032
             E   F
Sbjct: 1134 GEIALF 1139


>gi|254382569|ref|ZP_04997927.1| DNA polymerase III subunit alpha [Streptomyces sp. Mg1]
 gi|194341472|gb|EDX22438.1| DNA polymerase III subunit alpha [Streptomyces sp. Mg1]
          Length = 1180

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/1069 (31%), Positives = 531/1069 (49%), Gaps = 50/1069 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+P F HL VH+ YSLL+GA  L ++ +         IA++D  NL  A +F   A  
Sbjct: 1    MTKTP-FTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHTAQK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            +G+ PIIG +  +  +                    +         +  + + G   L  
Sbjct: 60   SGVTPIIGIEAYVAPESRRNKRRIQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y      +  R+    + +  +EGLI  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLTKWPRMDKETISQW-SEGLIASTGCPSGELQTRLRLGQFDEALKSASEY 178

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG DR ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYASEATAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             +     +S  DR R     Y    S       D  +A +      +  +  +       
Sbjct: 239  CIQTGKNLSDPDRFRFDGTGYYLK-STEEMYAIDSSDAWQEGCANTKLVADQIDTEGMFK 297

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             R +  + D      E +  R + + G+  R   G         D  ++ ++E++ I  M
Sbjct: 298  FRNLMPKFDIPEGHTEVSWFREETMRGMHRRYPGG------IPDDRLKQAEYEMDTIISM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAK   I VGPGRGS AGS+ AYA+ ITD+DPL   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLDPLTHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G+++AK A++D  R L  PY+ 
Sbjct: 412  RVSMPDVDIDFDERRRVEVIRYVTEKYGQDKVAMIGTYGTIKAKNAIKDSARVLGYPYAM 471

Query: 472  VDRLCKLIPND---PAHPVS------LQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DRL K +P D      P+S           +    R     +P V ++++ ++ +EGL 
Sbjct: 472  GDRLTKAMPADVLGKGIPLSGILDPQHPRYGEAGEIRGMYENEPDVKKVIDTARGVEGLV 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++    ++  VP++      + +TQ++    E  GL+K DFLGL+ LT++
Sbjct: 532  RQMGVHAAGVIMSSETITDHVPVWVRHTDQVTITQWDYPSCESLGLLKMDFLGLRNLTIM 591

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  +   +G+ +DL  +P DD +T+ LL    TLG+FQ +   MR  L  M+PD  E
Sbjct: 592  DDAVKMVKANKGIDIDLLALPLDDPKTFELLGRGDTLGVFQFDGGPMRSLLRLMKPDNFE 651

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQV 695
            DI A+ +LYRPGP+       Y  RKN +++I  IHP     ++ +L  T G+I+YQEQV
Sbjct: 652  DISAVSALYRPGPMGMNSHTNYALRKNKQQEITPIHPELEGPLEEVLAVTYGLIVYQEQV 711

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+++GYSL EAD+LRR MGKK  EE+ K    F  GA K G S      ++++L  
Sbjct: 712  QKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFVIFEGGAKKKGFSDQAIKALWDVLVP 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H+AAY ++SY TA++K ++P E++A  +T   D+ +K   +  + R+  I+
Sbjct: 772  FAGYAFNKAHSAAYGLVSYWTAYLKANFPAEYMAGLLTSVKDDKDKSAIYLNECRRMGIK 831

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            ++PP+VN    +F   GD+ I + L A++ VG      I++       + +  DF  +V+
Sbjct: 832  VLPPNVNESEPNFAAQGDDVILFGLTAVRNVGNNVVDSIIKTRKAKGKYSTFPDFLDKVE 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------ 927
            +   N+R +ESL+ AGA D  G++R  L+   + +      V++       ++F      
Sbjct: 892  AVVCNKRTVESLIKAGAFDEMGHTRKGLVAHHEPMIDNVVAVKRKEAEGQFDLFGAMGDE 951

Query: 928  -AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
               ++  F   +          S     E+ +LG Y S HPL   + +L      G  + 
Sbjct: 952  AGGDEPGFGLDVEFSDV-EWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKTDAGISQL 1010

Query: 987  V--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1011 TGGEHSDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1059


>gi|312140121|ref|YP_004007457.1| DNA polymerase iii alpha subunit dnae1 [Rhodococcus equi 103S]
 gi|311889460|emb|CBH48777.1| DNA polymerase III alpha subunit DnaE1 [Rhodococcus equi 103S]
          Length = 1178

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/1063 (29%), Positives = 523/1063 (49%), Gaps = 45/1063 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL  H+ YS+L+GA  +  +  +       A+ +TD  N++ A EF   A   GI
Sbjct: 2    ADSFVHLHNHTEYSMLDGAAKVGPLFKEAERLGMTAVGMTDHGNMYGASEFYNSAKKHGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +PIIG +  +  +                    +       + ++   + G + L +L S
Sbjct: 62   KPIIGIEAYVAPESRFNTKRVLWGDPSQKSDDVSGSGAYTHMTMVAENSTGLRNLFKLSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +  Q  +  R+    L     EG+I  TG  SG I         + A +    ++++
Sbjct: 122  LASIEGQLGKWPRMD-EELIATHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI 180

Query: 178  FG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            +G D  ++ L  H    +R     ++ +     +P +ATN+  +++++  E H+ L+ + 
Sbjct: 181  WGKDNFFLELMDHGLSIERRVREGLLSIGRQLGIPPLATNDCHYVTKDAAENHEALLCIQ 240

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                +S   R +   D Y    +E +    D          +                  
Sbjct: 241  TGKTLSDPTRFKFDGDGYYLKSAEEMRAIWDSEVPGACDNSVLIGERVQPYEDVWQHRDR 300

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +        + + + L  + + GL+ R   G        ++Y +R ++E+ VI +M F  
Sbjct: 301  MPIFPVPEGETQASWLHKEVMRGLDRRFPAG------PPREYIERAEYEIGVINQMGFPA 354

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+V D I  A++  I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R+SM
Sbjct: 355  YFLVVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERVSM 414

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR- 474
            PD DIDF   RR E++RY  +K+G ++VAQ+ITFG+++ KAA++D  R            
Sbjct: 415  PDIDIDFDDRRRGEMVRYATDKWGSDKVAQVITFGTIKTKAAIKDSARVQFGQPGFAIAD 474

Query: 475  --LCKLIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
                 L P   A  +S         +   +    R    ++P V ++ + ++ LEGL R+
Sbjct: 475  QITKALPPPIMAKDISVSGITDPEHERYKEAVEVRALIDSNPDVAKIYQTAKGLEGLIRN 534

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            A  HA  +++   PL+  +P+++  +    +T ++    E  GL+K DFLGL+ LT++  
Sbjct: 535  AGVHACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGD 594

Query: 585  SLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +++ +   RGV +DL  +P +D  TY LL    TLG+FQL+ S MR  L  MQP   EDI
Sbjct: 595  AIENIKANRGVDIDLDTLPLEDPATYELLARGDTLGVFQLDGSAMRDLLRRMQPTGFEDI 654

Query: 644  IALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQVMQ 697
            +A+++LYRPGP+       Y +RKNG++ +  IHP ++  LK    +T G+I+YQEQ+MQ
Sbjct: 655  VAVLALYRPGPMGMNAHNDYADRKNGRQDVKPIHPELEEPLKEILADTFGLIVYQEQIMQ 714

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IAQ ++GYSL +AD+LRRAMGKK KE +D+  + F  G   NG S+     +++ +  FA
Sbjct: 715  IAQKVAGYSLGQADLLRRAMGKKKKEILDEAYDGFAEGMKANGFSQAAITALWDTVLPFA 774

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             Y FNKSHAA Y ++S+ TA++K +YP E++A  +T   D+ +K   +  D R+  I ++
Sbjct: 775  GYAFNKSHAAGYGLVSFWTAYLKANYPSEYMAGLLTSVGDDKDKAAVYLSDCRKMGITVL 834

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876
            PP VN   VDF      I + L A++ VG      I+ A  +   F    D+ +++D+  
Sbjct: 835  PPDVNASRVDFASVGEDIRFGLGAVRNVGANVVGSIIAAREEKGSFTDFSDYLNKIDALA 894

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             +++V ESL+ AG  D  G+ R  L+    +        +K       ++F  +    S 
Sbjct: 895  CSKKVTESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAMGQFDLFGGDDADESI 954

Query: 937  K----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TI 990
                 + +      +S  +   E+ +LG Y SGHPL+  + +L           +     
Sbjct: 955  TSVFNVKVPD-EEWDSKHKLALEREMLGLYVSGHPLNGVEHVLAAQSDTSIPVILEGDIK 1013

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G  + +  ++ S  ++  + G         + +   E  FFP
Sbjct: 1014 DGTQVTVGGILASVNRRINKNGLTWASAQLEDLSGGIEVLFFP 1056


>gi|325674398|ref|ZP_08154086.1| DNA-directed DNA polymerase III alpha subunit [Rhodococcus equi ATCC
            33707]
 gi|325554658|gb|EGD24332.1| DNA-directed DNA polymerase III alpha subunit [Rhodococcus equi ATCC
            33707]
          Length = 1178

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/1063 (29%), Positives = 523/1063 (49%), Gaps = 45/1063 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL  H+ YS+L+GA  +  +  +       A+ +TD  N++ A EF   A   GI
Sbjct: 2    ADSFVHLHNHTEYSMLDGAAKVGPLFKEAERLGMTAVGMTDHGNMYGASEFYNSAKKHGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +PIIG +  +  +                    +       + ++   + G + L +L S
Sbjct: 62   KPIIGIEAYVAPESRFNTKRVLWGDPSQKSDDVSGSGAYTHMTMVAENSTGLRNLFKLSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +  Q  +  R+    L     EG+I  TG  SG I         + A +    ++++
Sbjct: 122  LASIEGQLGKWPRMD-EELIATHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI 180

Query: 178  FG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            +G D  ++ L  H    +R     ++ +     +P +ATN+  +++++  E H+ L+ + 
Sbjct: 181  WGKDNFFLELMDHGLSIERRVREGLLSIGRQLGIPPLATNDCHYVTKDAAENHEALLCIQ 240

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                +S   R +   D Y    +E +    D          +                  
Sbjct: 241  TGKTLSDPTRFKFDGDGYYLKSAEEMRAIWDSEVPGACDNSVLIGERVQPYEDVWQHRDR 300

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +        + + + L  + + GL+ R   G        ++Y +R ++E+ VI +M F  
Sbjct: 301  MPIFPVPEGETQASWLHKEVMRGLDRRFPAG------PPREYIERAEYEIGVINQMGFPA 354

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+V D I  A++  I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R+SM
Sbjct: 355  YFLVVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERVSM 414

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR- 474
            PD DIDF   RR E++RY  +K+G ++VAQ+ITFG+++ KAA++D  R            
Sbjct: 415  PDIDIDFDDRRRGEMVRYATDKWGSDKVAQVITFGTIKTKAAIKDSARVQFGQPGFAIAD 474

Query: 475  --LCKLIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
                 L P   A  +S         +   +    R    ++P V ++ + ++ LEGL R+
Sbjct: 475  QITKALPPPIMAKDISVSGITDPEHERYKEAVEVRALIDSNPDVAKIYQTAKGLEGLIRN 534

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            A  HA  +++   PL+  +P+++  +    +T ++    E  GL+K DFLGL+ LT++  
Sbjct: 535  AGVHACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGD 594

Query: 585  SLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +++ +   RGV +DL  +P +D  TY LL    TLG+FQL+ S MR  L  MQP   EDI
Sbjct: 595  AIENIKANRGVDIDLDTLPLEDPATYELLARGDTLGVFQLDGSAMRDLLRRMQPTGFEDI 654

Query: 644  IALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQVMQ 697
            +A+++LYRPGP+       Y +RKNG++ +  IHP ++  LK    +T G+I+YQEQ+MQ
Sbjct: 655  VAVLALYRPGPMGMNAHNDYADRKNGRQDVKPIHPELEEPLKEILADTFGLIVYQEQIMQ 714

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IAQ ++GYSL +AD+LRRAMGKK KE +D+  + F  G   NG S+     +++ +  FA
Sbjct: 715  IAQKVAGYSLGQADLLRRAMGKKKKEILDEAYDGFAEGMKANGFSQAAITALWDTVLPFA 774

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             Y FNKSHAA Y ++S+ TA++K +YP E++A  +T   D+ +K   +  D R+  I ++
Sbjct: 775  GYAFNKSHAAGYGLVSFWTAYLKANYPSEYMAGLLTSVGDDKDKAAVYLSDCRKMGITVL 834

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876
            PP VN   VDF      I + L A++ VG      I+ A  +   F    D+ +++D+  
Sbjct: 835  PPDVNASRVDFASVGEDIRFGLGAVRNVGANVVGSIIAAREEKGSFTDFSDYLNKIDALA 894

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             +++V ESL+ AG  D  G+ R  L+    +        +K       ++F  +    S 
Sbjct: 895  CSKKVTESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAMGQFDLFGGDDADESI 954

Query: 937  K----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TI 990
                 + +      +S  +   E+ +LG Y SGHPL+  + +L           +     
Sbjct: 955  TSVFNVKVPD-EEWDSKHKLALEREMLGLYVSGHPLNGVEHVLAAQSDTSIPVILEGDIK 1013

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G  + +  ++ S  ++  + G         + +   E  FFP
Sbjct: 1014 DGTQVTVGGILASVNRRINKNGLTWASAQLEDLSGGIEVLFFP 1056


>gi|255012661|ref|ZP_05284787.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_7]
          Length = 1281

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1153 (31%), Positives = 577/1153 (50%), Gaps = 137/1153 (11%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            Y+E    F+HL VH+ YSLL+G  S++ ++DK   D   AIA+TD   +F   EF  K  
Sbjct: 14   YME---PFIHLHVHTQYSLLDGQASIDALIDKAYKDGMRAIAVTDHGVMFGIKEFFNKVS 70

Query: 64   AA-----GI----------------------------------------QPIIGCQLDID 78
                   GI                                        +PIIGC+    
Sbjct: 71   KKNSKPLGIIKDSEKELKPLLAKDAPTDEEQQRITELQKQIAEAKASIFKPIIGCECYCA 130

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
                            +   +++L     GY+ LI++VS  +  +      RI    L++
Sbjct: 131  RNGRHSKLASQDDR--SGWHLIVLAKNKNGYKNLIKMVSLSWT-EGFYGRPRIDKELLEK 187

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD----- 193
               E LI+ +    G I +         AE+ +  FK LFG+  Y+ +QRH  +D     
Sbjct: 188  YH-EDLIICSACLGGEIPQHIMHGRIDKAEESIKWFKNLFGEDYYLEMQRHETHDPNADC 246

Query: 194  ------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                  +     +++LA+ + + L+ATN+  F++ +D EAHD L+ ++    +    R R
Sbjct: 247  TIFPHQQEVNKVLIELAHKYNIKLIATNDVHFVNADDAEAHDRLICLSTGKDLDDPKRMR 306

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE- 306
             +   ++K  +EM +IF+D+PEAL NT+EIA +  F      PI+P F   E    ++  
Sbjct: 307  YSKQEWMKTTAEMNTIFADIPEALSNTLEIADKIEFYSIDSGPIMPTFAIPEEFGTEESY 366

Query: 307  ----------------------------------------------EENELRNKAVAGLE 320
                                                          E + L      G +
Sbjct: 367  RQKLTEHDLFEEFTRDENGNVVLSEEEAHSKIKKLGGYDKLYRIKLEADYLAKLTYDGAK 426

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRG 379
                           + ++RL+FEL+++  M F GYFLIV DFI+ A++   + VGPGRG
Sbjct: 427  ELYGDPL------NDEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRG 480

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            S AGS  AY L IT IDP+++ LLFERFLNPDR+S+PD D DF  D R EV+R+V  KYG
Sbjct: 481  SAAGSAVAYCLGITKIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYG 540

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP---NDPAHPVSLQAIADDS 496
             ERVA IIT+G++  K+A++DV R  ++P S+ +RL KL+P    D        AI    
Sbjct: 541  AERVAHIITYGTMATKSAIKDVARVQKLPLSESNRLAKLVPDKIPDMKKFKLGDAIKYVP 600

Query: 497  RFREARL-ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRS 551
              +EA    DP     L+ +Q LEG  R+   HA G++IG   +S +VP+     +D   
Sbjct: 601  ELKEAANGNDPLARDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGE 660

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            ++ VTQ+    IE+ GLIK DFLGLKTL++++++++ +        D+  I  +D +TY 
Sbjct: 661  EMLVTQYEGSVIEETGLIKMDFLGLKTLSIIKEAIENVKLTTGHDLDIDHISLEDPKTYK 720

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T G FQ ES+GM++ L+ +QP   ED+IA+ +LYRPGP+D I  +  RK GKE+
Sbjct: 721  LYCDGKTTGTFQFESAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEE 780

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            I    P+++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+ E+M+  K 
Sbjct: 781  IKYDIPVMERYLKDTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKS 840

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            +F++G   NG  +     I+    KFA Y FNKSHA  Y+ ++YQTA++K ++P E++AA
Sbjct: 841  KFMAGGQANGYKEETLNKIWSDWEKFASYAFNKSHATCYSWVAYQTAYLKANFPSEYMAA 900

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTT 849
             ++  + N+  I KF  + +   IQ++ P VN   + F V  N+ I + L A+KGVG + 
Sbjct: 901  VLSRSLSNITDITKFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGESA 960

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS---- 904
             ++I+E    + P+ S+ DF  RV+    N++ +ES+  AGA D FG  R Q        
Sbjct: 961  VQNIIEERKKNGPYKSIFDFVERVNLTACNKKNIESMALAGAFDNFGIQREQFFTDSGKG 1020

Query: 905  ---LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
               LD + +Y    + +++    ++F  +      K  + +    +   R   E+ ++G 
Sbjct: 1021 ELFLDTLVRYGNKYQMDKSTAVNSLFGGDALIAIAKPEIPQCERWSDLERLNKEKELVGI 1080

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPLD Y+ IL+ +   G  E       +G  + L  +V   ++  T+ G   G + 
Sbjct: 1081 YLSAHPLDEYRIILKYVCNTGMVELNERETLQGREVLLGGIVTGFREGMTKNGKPYGILK 1140

Query: 1020 FSEPAKEYEANFF 1032
              +     E   F
Sbjct: 1141 IEDFTGSGEIPLF 1153


>gi|256396217|ref|YP_003117781.1| DNA polymerase III subunit alpha [Catenulispora acidiphila DSM 44928]
 gi|256362443|gb|ACU75940.1| DNA polymerase III, alpha subunit [Catenulispora acidiphila DSM
            44928]
          Length = 1189

 Score =  720 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/1064 (32%), Positives = 527/1064 (49%), Gaps = 44/1064 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL VH+ YS+L+GA  L ++    ++   PA+A+TD  N+  A +F+++A AAGI
Sbjct: 2    SDSFVHLHVHTEYSMLDGAARLKDMFKHASSLGMPAVAMTDHGNMHGAADFTKQAMAAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +PI+G +  +  +                    +         +      G Q L +L S
Sbjct: 62   KPILGIEAYVAPESRYNAKPVRWGQPHQKSDDVSGGGLYGHATIWAQNVTGLQNLTKLSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
            R +     ++  R+    + E  + GL+  TG  SG +           A      ++++
Sbjct: 122  RAFTEGFARKYPRMDAELMAE-HSAGLMATTGCPSGFVQTRLRLGHFDEALAAAGQYQEI 180

Query: 178  FG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG +  Y+ L  H    +      ++ +     +P V TN+S +   E+  AHD L+ + 
Sbjct: 181  FGKENFYLELMDHGLDIETRVREGLLDIGRKLNIPPVVTNDSHYTYREESAAHDALLCIQ 240

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
             ++ ++  DR R   D Y    ++ +   +      E           +           
Sbjct: 241  TASNIADPDRFRFGGDGYYLKSADEMRAINTDDIWQEGCRNTLAIAEKVNPEGMFAYRNL 300

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            + +        E+   R  A  GL  R   G        + Y  RL+FEL+VI  M F  
Sbjct: 301  MPRLEAPDGLTEDQWFRKLAYDGLNKRFPAGVPD----EKVYHARLEFELDVILSMGFPS 356

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YF++VADFI WAK N I VGPGRGS AGS+ A++L ITD+DP+ F LLFERFLNPDR++ 
Sbjct: 357  YFIVVADFINWAKDNGIAVGPGRGSAAGSLVAWSLGITDVDPIPFDLLFERFLNPDRVTP 416

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD DIDF   RR +VIRYV  KYG ++VA I TFG ++AKAA++D  R L  P++  DR+
Sbjct: 417  PDIDIDFDDRRRSDVIRYVTEKYGEDKVAMIATFGRIKAKAAIKDSSRILGYPFAMGDRI 476

Query: 476  CKLIPND-PAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
             K +P D     +              +    R     D  V ++++  + +EGL R   
Sbjct: 477  TKAMPPDVMGKSMPLSGVFDSNHPRYGEAGEIRGMYEQDADVKKVIDTGRGVEGLIRQPG 536

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HAAG++I    ++  VP+       + +TQF+    E+ GLIK DFLGL+ LT++  +L
Sbjct: 537  VHAAGVIISPETITDHVPVMMRPADGVIITQFDYPTCEEIGLIKMDFLGLRNLTIITDAL 596

Query: 587  DFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            + +     K  +    P DD  TY LL    TLG+FQL+   +R  L  M+PD  ED+ A
Sbjct: 597  NNVETTTGKRLNTLEFPLDDPLTYELLCKGDTLGVFQLDGGPLRSLLRQMRPDNFEDVSA 656

Query: 646  LVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQIA 699
            +++LYRPGP+  ++ + Y  RKN ++ I  IHP     +  +L  + G+IIYQEQVM  A
Sbjct: 657  IIALYRPGPMGANSHINYAERKNNRQPITPIHPELEAPLKEVLGVSYGLIIYQEQVMAAA 716

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            ++L+GYSL++AD+LRRAMGKK KE +DK+   F  G + NG S      ++++L  FADY
Sbjct: 717  RVLAGYSLAQADLLRRAMGKKKKEVLDKEYVGFEKGMADNGYSAQATKAVWDVLVPFADY 776

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSH+ AY  I+YQTA++K HYP E++AA +T    + ++   +  + R+  I+++PP
Sbjct: 777  AFNKSHSVAYGFIAYQTAYLKAHYPAEYMAALLTSTATDKDRSAIYLGECRRMGIKVLPP 836

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878
             VN     F      I + L AI+ VG      I+        F S  DF ++VD    N
Sbjct: 837  DVNDSLHQFTPVGTDIRFGLGAIRNVGENVVTSIIATRKAKGRFTSFNDFLAKVDLPVCN 896

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            +R +ESL+ AGA D  G+SR  L++  +        V+K      +++F        + I
Sbjct: 897  KRTIESLIKAGAFDSLGHSRRGLIEQHERAIDSVVDVKKQEALGQDSLFGSLMDGGQEAI 956

Query: 939  T------LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VAT 989
            T             +  V    E+ +LG Y S HPL   + +L                 
Sbjct: 957  TGGIELAFSDI-EWDKKVLLGFEREMLGLYVSDHPLSGVENLLASKADCSIASLTGENDR 1015

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              G+ + +A +V    +K T++G+     +  +     E  FFP
Sbjct: 1016 ADGSIVTIAGLVAGLARKVTKQGNTWAAASVEDLEGGIETMFFP 1059


>gi|146299070|ref|YP_001193661.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101]
 gi|146153488|gb|ABQ04342.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101]
          Length = 1510

 Score =  720 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/1094 (31%), Positives = 554/1094 (50%), Gaps = 85/1094 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS------- 59
            K+  F HL  H+ +S+L+  + + NI+   A +  PA+A+TDT N+  A  F        
Sbjct: 257  KAAKFAHLHNHTQFSVLQSTIGIGNIVAATAKNGMPAVAMTDTGNMMGAFHFVSAVMNHN 316

Query: 60   -------QKACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
                   +    AG       I+PI+GC+ +I         +  K+       +VLL   
Sbjct: 317  KAASGKNKALVEAGEEPTETEIKPIVGCEFNIC------ENHLDKSKKDNGYQVVLLAKN 370

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
              GY  L ++ S  Y  +      RI  + +++     +++L+G   G I          
Sbjct: 371  KAGYHNLAKMASIAYT-EGFYYVPRIDKNIVEKY-KGDIMVLSGNLYGEIPSKILNIGEN 428

Query: 166  VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEED 224
             AE+ L+ +K+ FG+  Y+ + RH   D  R    +++ +  H + L+ATNN+ +L++ED
Sbjct: 429  QAEEALIWWKEQFGEDFYLEVMRHNQEDENRVNKTLIEFSQKHNVKLIATNNTYYLNKED 488

Query: 225  YEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
              AHD+L+ V      +                ++Y K+ +EM  +F+DLPEA+ N  E+
Sbjct: 489  ANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSEAEMKKLFADLPEAIINIQEV 548

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEEN--------ELRNKAVAGLEVRLAQGAIA 329
              +          +LP+F   +   + ++EE+         LR+  + G +         
Sbjct: 549  IDKVEGYSLYRDVLLPKFEIPDEFMVPEDEEDGGVRGENKYLRHLTMEGAKR-------R 601

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
             G   +  ++RLDFEL  I+   + GYFLIV DFI  A+K ++ VGPGRGS AGS  AY 
Sbjct: 602  YGEITESIQERLDFELMTISNSGYPGYFLIVQDFIAEARKMDVSVGPGRGSAAGSAVAYC 661

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L IT+IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV NKYG ++VAQIIT+
Sbjct: 662  LGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGQKQVAQIITY 721

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-----------------LQAI 492
            G +  K+A+RD  R L +P  + DR+ KLIP       +                     
Sbjct: 722  GKMATKSAIRDTARVLDLPLFEADRIAKLIPGMMPSKWNLARFISESEEEVKKALRSDEF 781

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
             +          D      ++ ++ LEG  R+   HA G++I    ++  VP+     SD
Sbjct: 782  DNVKELIAIANEDDLAGETIQQAKILEGSMRNTGIHACGVIITPSDITNYVPVTTAKDSD 841

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHL 611
            L VTQF+    E AGL+K DFLGLKTLTL++ ++  +  R     D    P DD ETY L
Sbjct: 842  LYVTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRTGIDLDPDNFPIDDEETYAL 901

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
                 T+GIFQ ES GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RKNG E+I
Sbjct: 902  FQRGETVGIFQYESPGMQKYMKDLKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGDEEI 961

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
                      L ET G+ +YQEQVM ++Q L+G++  EADVLR+AMGKK K+ +DK K +
Sbjct: 962  KYDLDACAEYLSETYGITVYQEQVMLLSQSLAGFTKGEADVLRKAMGKKQKDVLDKMKPK 1021

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            F+  A++ G    I   I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA 
Sbjct: 1022 FVEQAAQKGHDAKILEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAV 1081

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTA 850
            ++  M++++++  F ++ ++  +Q++ P VN     F V D+  + + + AIKGVG+   
Sbjct: 1082 LSNNMNDIKQVSFFMEECKRMGLQVLGPDVNESYYKFTVNDDYAVRFGMGAIKGVGSGAV 1141

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS----- 904
              I+E   D  + S+ D   R+D +  N++ +E+L  AG  D F G +R Q         
Sbjct: 1142 ETIVENRKDGRYKSIFDLAKRIDLRAANKKAIENLALAGGFDSFEGTTRAQYFHDDGDGI 1201

Query: 905  --LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
               +   +Y    ++N  +   ++F         +  +      ++  +   E+ V+G Y
Sbjct: 1202 TFYEKAMRYGSKFQENENSSQVSLFGEASEVQIAEPVVPPCEDWSTMEKLAKEKEVVGIY 1261

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             SGHPLD ++  ++       E   +     G N+  A ++ + Q +  + G        
Sbjct: 1262 ISGHPLDDFRFEMKYFCNARLEALKSMNEYVGKNLNFAGIINNVQHRVAKNGKGWAAFNL 1321

Query: 1021 S--EPAKEYEANFF 1032
               + +  YE   F
Sbjct: 1322 EGYDES--YEFKIF 1333


>gi|229543549|ref|ZP_04432609.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
 gi|229327969|gb|EEN93644.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
          Length = 1114

 Score =  720 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1027 (37%), Positives = 587/1027 (57%), Gaps = 38/1027 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHLQV ++YSLLE  +S+        A     +AITD N ++ A  F +     GI+P
Sbjct: 2    RFVHLQVQTAYSLLESTISIPEWAAYAKALHYDTLAITDRNVMYGAFPFYKACRENGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG   DI                 T   +VLL     GY+ L+++ S +          
Sbjct: 62   IIGMTADI----------MSSFEPDTAYPVVLLAKNETGYRHLMKISSAIQTRP----EP 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I + WL+   ++GLI  T G  G I++A        AE+  + ++ +FG   Y+ L+ +
Sbjct: 108  GIFIKWLRAY-SDGLIAFTPGLEGEIEQALLRGDEARAEEVAVLYRDIFGPSFYLALENN 166

Query: 190  RGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                 +     +  L+    +P VA  N  +L +ED  AH+VL A+     ++ ++RPR 
Sbjct: 167  GTVQAKKVLPDMHALSEKLGIPEVAAANVKYLKKEDAFAHEVLRAIKAGVKLTDENRPRP 226

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +  H  K + EM  +F+D PEAL NT +IA  CS  ++    +LP F         +  
Sbjct: 227  ESGTHDFKPQEEMEQLFADFPEALANTEKIADACSVEIKTGQRLLPAFPVPGG----QTA 282

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L      GL  R+           + Y  RL++EL +I  M+FS YFLIV DF+++A
Sbjct: 283  DAFLEEVCRKGLAARVPN-------LEERYTDRLEYELKIIQEMQFSDYFLIVWDFMKYA 335

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +++ I  GPGRGS AGS+ AYAL ITD+DP+++ LLFERFLNP+R+SMPD D DF   +R
Sbjct: 336  REHGILTGPGRGSAAGSLVAYALYITDVDPVQYGLLFERFLNPERISMPDIDSDFPDHKR 395

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+IRYV  KYG + VAQIITFG+  AKAA RDV R   +   ++++L + IP+ P   +
Sbjct: 396  DEMIRYVAEKYGRQHVAQIITFGTFAAKAAARDVARIFGLSAKELEQLSRFIPSQPGMTL 455

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                    S FRE         +L E +  LEGL RH STHAAG++I   PL+ ++P+  
Sbjct: 456  KKA-YEASSAFREWIGQSDQHRKLFETALLLEGLPRHVSTHAAGVIISGEPLTGIIPVQ- 513

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
            +    + +TQ+ M  +E+ GL+K DFLGL+ LT+L+  L  + +  G K+ L  +P DD 
Sbjct: 514  EGHDGIFLTQYPMNHLEEIGLLKMDFLGLRNLTILEHILTGIEKGTGRKIRLQDVPLDDP 573

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T+ L ++  T GIFQ ES GMR+ LE ++P   EDI+A+ +LYRPGP++NI  Y  RK+
Sbjct: 574  QTFRLFSSGNTTGIFQFESDGMRKVLERLKPTEFEDIVAVNALYRPGPMENIPAYIERKH 633

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G + +   HP + P+L++T GVI+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +E +D
Sbjct: 634  GLKPVEYPHPDLQPILEKTYGVIVYQEQIMQIASKMAGFSLGEADLLRRAVSKKKREILD 693

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +Q+  FI+GA K G  +  A  I++ + +FA+YGFN+SHA AY++++ + A++K HYP+ 
Sbjct: 694  EQRLHFINGAQKKGYERKTANTIYDFIVRFANYGFNRSHAVAYSMLACRLAYLKAHYPLY 753

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+A+ +T  + N +KI ++ ++A+Q  I+++PPSV      F V +  I YSLAAIKG+G
Sbjct: 754  FMASLLTSVIGNEDKIAQYIREAQQMGIRVLPPSVQHSHYPFTVENGAIRYSLAAIKGIG 813

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
              + + +++    +PF SL D   RV  K LNR++LE+  F+GA+D FG  R  LL S+D
Sbjct: 814  YASIKELLKERKRRPFKSLFDLVLRV--KGLNRKILEAFAFSGAMDEFGKDRAVLLASID 871

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
               ++A+ ++ +  +   ++F  E   FS +    +    +   +   E++ LG Y SGH
Sbjct: 872  VALEHAEIMKPD--DGQADLF-FEDEAFSIEPNYVETEPISLMDKLAFEKQYLGLYLSGH 928

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P   Y+P   + G+    +    +    IR  A +   +  +T++GS + ++  S+   E
Sbjct: 929  PAGQYRPGWDEAGVLAVSKLQPGM--RKIRFGACITDTRTIRTKQGSLMAFLRMSDETDE 986

Query: 1027 YEANFFP 1033
             E   FP
Sbjct: 987  IECVVFP 993


>gi|124267439|ref|YP_001021443.1| DNA polymerase III subunit alpha [Methylibium petroleiphilum PM1]
 gi|124260214|gb|ABM95208.1| DNA polymerase III, alpha subunit [Methylibium petroleiphilum PM1]
          Length = 1174

 Score =  720 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1053 (39%), Positives = 589/1053 (55%), Gaps = 41/1053 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  SPSFVHL+ H+ YS+++G L +++++   AAD+QPA+AITD +NLF A++F   A  
Sbjct: 1    MTSSPSFVHLRTHTEYSVVDGMLRVDDMVAAAAADEQPALAITDLSNLFGAIKFYGAARG 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QP+IG  L ++ + + K              ++LLV    GY  L EL+S  +  + 
Sbjct: 61   KGVQPLIGADLWLEAESDEKQP----------SRLLLLVQNRTGYLNLCELISHAWTENL 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    +    L +   +GLI L+G   G +  A     +  AE + L    LF  R Y+
Sbjct: 111  QRHQACVAWPQLAK-HGDGLIALSGADLGAVGLALLAGDAVRAEAQALRLAALFPGRFYL 169

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR     +  +   VV LA    LP+VAT+   FLS +D+EAH+  + +A    ++  
Sbjct: 170  ELQRAGQAGNEAQVRAVVPLAAKLGLPVVATHPVQFLSADDFEAHEARVCIAEGETLTNP 229

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R T + + K  ++MV +F+D+P A+ NT+ IARRC   L +  P LP F     D 
Sbjct: 230  RRVKRFTREQHFKTAAQMVELFADIPSAIANTLAIARRCHLTLTLGKPQLPDFPTPIVDG 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLI 359
             +   ++  R+ + AGL  RLAQ    +    +    Y +RLDFE+  I +M F GYFLI
Sbjct: 290  QRMAPDDYFRHASHAGLNERLAQLYPNEDERERHRARYVERLDFEIETILKMGFPGYFLI 349

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N  PVGPGRGSGAGS+ AYAL ITD+DPL ++LLFERFLNPDR+SMPDFD
Sbjct: 350  VADFINWAKGNGCPVGPGRGSGAGSLVAYALKITDLDPLAYNLLFERFLNPDRVSMPDFD 409

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAALRDVGR L M Y  VD + KL+
Sbjct: 410  IDFCQGNRDRVIDYVKQKYGRDAVSQIATFGTMAAKAALRDVGRVLGMGYGHVDSIAKLV 469

Query: 480  PNDPAHPVS------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
            P  P   V+            + A  +     +    +  V  LL +++++EG  R+   
Sbjct: 470  PAPPGKTVTLKRPGDRPDPGLIYARKEAPEIEQREQKEEEVAELLALAERVEGTVRNIGM 529

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QK 584
            HA G++I    ++   P+Y+   SD  V+Q++   +E  GL+KFDFLGL TLT+L   + 
Sbjct: 530  HAGGVLIAPGKITDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILELAKD 589

Query: 585  SLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
             +              I  DD +TY LL+   T+ +FQLES GM+  L   +P   EDII
Sbjct: 590  FIRTRHADRADFAFENIALDDRKTYQLLSEGKTVAVFQLESRGMQGMLREARPSVFEDII 649

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            ALV+LYRPGP+D I  +  RK+GKE++   HPL+  +L+ET G+++YQEQVMQ+AQ L G
Sbjct: 650  ALVALYRPGPMDLIPSFCARKHGKEEVDYPHPLMREVLEETYGIMVYQEQVMQVAQRLGG 709

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            YSL  AD+LRRAMGKK  EEM K +  F  GA+KNGI   +A  IF+L+ KFA YGFNKS
Sbjct: 710  YSLGGADLLRRAMGKKKAEEMAKHRVIFAEGAAKNGIGAGLANEIFDLMEKFAGYGFNKS 769

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAAAYA+++Y TAW K HY  EF AA+M++ +D+ +K+K F  DA    +    P VN  
Sbjct: 770  HAAAYALLAYHTAWAKVHYLAEFTAANMSVALDDTDKLKIFHDDAVSLGVVFEAPDVNAG 829

Query: 825  CVDFKV------GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKL 877
               F+          R+ Y L AIKG G      I+       P+ SL DF +RVD  ++
Sbjct: 830  GYRFEPVAPQGKERGRVRYGLGAIKGTGQGAIEAIVDARREGGPYKSLFDFAARVDRSRV 889

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            N+RV+E+L+  GA D     R  L+ S+    +YA     N        F       +++
Sbjct: 890  NKRVVEALIKGGAFDALEADRAVLMASVPLAFEYADTQAANADQGGLFDFGDSHAASTNE 949

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
              L      +   R  +E+  LGFY SGH  D  +  +R+   +   + + +       L
Sbjct: 950  PDLVATEAWSIKERLTHEKAALGFYLSGHLFDECETEVRQFARRRIADLLDSREPQ--LL 1007

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            A +V   +    ++G R+      + ++  EA 
Sbjct: 1008 AGIVTELRVVNGQRG-RVAIFKLDDKSETIEAV 1039


>gi|227540116|ref|ZP_03970165.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
            33300]
 gi|227239977|gb|EEI89992.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
            33300]
          Length = 1474

 Score =  720 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/1099 (30%), Positives = 531/1099 (48%), Gaps = 92/1099 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----------- 59
            F HL  HS +S+L+  +S+  ++D    ++ PA+A+TD  N+  A  F            
Sbjct: 259  FAHLHNHSQFSVLQSTISIGGLVDAAVKNKMPAVALTDHGNMMGAFHFVSRVLGHNKDAE 318

Query: 60   ---QKACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
               Q+    G       I+PI+GC+  I         +  K+       +V L     GY
Sbjct: 319  TKNQELIDNGEAPTETIIKPIVGCEFFICED------HLDKSRKDNGYQVVFLAKNKNGY 372

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L ++ S  Y         RI    +++   E +I+L+G   G I           AE+
Sbjct: 373  HNLAKMSSVAYTKG-FYYVPRIDKKVVEQY-KEDIIVLSGNLQGEIPNKILNIGENQAEE 430

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             L+ +K+ FG+  Y+ + RH   D  R    +V LA  H + ++ TNN+ ++++ D  AH
Sbjct: 431  ALIWWKEQFGEDFYIEVMRHGQEDENRVNETLVSLARRHGVKVIGTNNTYYVNKADAHAH 490

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            D+L+ V     +S            L N+        ++ +   +  E       I+   
Sbjct: 491  DILLCVKDGEKLSTPKGRGRGFRFGLPNQEYYFKSAPEMKKVFADLPEAIVNIQEIIDKV 550

Query: 289  API---------------LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
                                +  E   D  ++ E   L +    G E R A+        
Sbjct: 551  EIFKLNRDVLLPKFEIPEQFQVQEDNEDGGKRGENKYLAHLTYVGAEKRYAE-------I 603

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
              D R+RLDFEL  I +  + GYFLIV DFI  A+   + VGPGRGS AGS  AY L IT
Sbjct: 604  TDDIRERLDFELATIEKTGYPGYFLIVQDFIAEARNMGVSVGPGRGSAAGSAVAYCLGIT 663

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            +IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V++YV +KYG  +VAQIIT+G++ 
Sbjct: 664  NIDPIQYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMQYVIDKYGASQVAQIITYGTMA 723

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA------------IADDSRFREA 501
            AK++++D  R L +P ++ + + KLIPN     +                +    +    
Sbjct: 724  AKSSIKDTARVLDLPLAEANEIAKLIPNLKLSKIFNMDEKALKEALRAEELEAVHKLISL 783

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
                      ++ ++ LEG  R+   HA G++I    ++  VP+     SDL VTQF+  
Sbjct: 784  ADGAGLEAETIKQARVLEGSMRNTGIHACGVIITPDDITNFVPVSLAKDSDLYVTQFDNS 843

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGI 620
             +E AGL+K DFLGLKTLTL++ ++  +  R     D    P DD  TY L     T+G+
Sbjct: 844  VVESAGLLKMDFLGLKTLTLIKDTVANVKLRHNLDLDPDNFPIDDQLTYELFQRGETIGV 903

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
            FQ ES GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RK+G E IV      + 
Sbjct: 904  FQYESPGMQKHMKDLKPTVFADLIAMNALYRPGPMEYIPSFIKRKHGIEPIVYDLDACEE 963

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
             LKET G+ +YQEQVM ++Q L+G+S  +ADVLR+AMGKK K  +DK K +F++ A + G
Sbjct: 964  YLKETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKQKAVLDKMKPKFVAQAVEKG 1023

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             +  +   I+     FA Y FNKSH+  YA ++YQTA++K H+P E++AA ++  M++++
Sbjct: 1024 HNAKVLEKIWTDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHFPAEYMAAVLSNNMNDIK 1083

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD 859
            ++  F ++ R+  ++++ P VN     F V D   I + + A+KGVG      I++    
Sbjct: 1084 QVTFFMEECRRMGLEVLGPDVNESHYKFTVNDRGAIRFGMGAVKGVGAGAVDTIVQTREG 1143

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKY 911
             P+ S+ D   R+D +  N++  ESL +AG  D F    R Q           L+   K+
Sbjct: 1144 NPYKSVFDMAKRIDLRAANKKAFESLAYAGGFDSFKDTHRAQYFHVDGDNSTGLEKAVKF 1203

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
             Q  ++N ++   ++F         +  L          + + E+ V+G Y + HPLD Y
Sbjct: 1204 GQRHKENESSAQASLFGGGGSAELPEPVLAPCPQWGLIEKLKYEKDVIGIYLTSHPLDNY 1263

Query: 972  KPILRKMGIKGYEESV------------------ATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            K  ++        E                      I+   + +  ++ +   + ++ G 
Sbjct: 1264 KFEIKHFCQNNVSELQLINKVKASEVEEDVLLEFNKIKNKEVIIGGIIAAANHRVSKNGK 1323

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
              G +   + +  +E   F
Sbjct: 1324 PFGILVIEDYSDSFEMMVF 1342


>gi|146281926|ref|YP_001172079.1| DNA polymerase III subunit alpha [Pseudomonas stutzeri A1501]
 gi|145570131|gb|ABP79237.1| DNA polymerase III, alpha chain [Pseudomonas stutzeri A1501]
          Length = 1131

 Score =  720 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1019 (39%), Positives = 580/1019 (56%), Gaps = 55/1019 (5%)

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            N+ S ++F + A  AGI+PI G  + +   D              +  + LL    +GY+
Sbjct: 3    NMCSLVKFYKTAQGAGIKPICGADIWLAGCDE----------DGPLSRLTLLAMNPKGYR 52

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L EL+SR +   Q    V I   W++E   EGLI L+G   G I  A       +A  R
Sbjct: 53   NLTELISRGWTEGQRNDLVIIEREWVKE-AAEGLIALSGAKEGEIGHALLNGDEALAASR 111

Query: 171  LLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            L  ++++F DR Y+ +QR +R  D       V LA     PLVATN+  FL +ED+EAH+
Sbjct: 112  LAEWREVFADRFYLEVQRTNRVNDEEHLHAAVALAERSGAPLVATNDVRFLKQEDFEAHE 171

Query: 230  VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              + +     +    RPR  +   YLK   EM  +F+DLPEALENTVEIA+RC+  +Q+ 
Sbjct: 172  TRVCIGEGRTLDDPRRPRTYSDQQYLKTPEEMAELFADLPEALENTVEIAKRCNIEVQLG 231

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRL----AQGAIAKGYHAQDYRQRLDFE 344
               LP F   E   I    ++ LR  +  GLE RL     +         Q Y  RL+FE
Sbjct: 232  TYFLPNFPVPEGMTI----DDYLRQVSFEGLEERLEVLLPKDTPDYEAKKQVYIDRLEFE 287

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L  I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLF
Sbjct: 288  LGTIIQMGFPGYFLIVMDFIKWAKNNGVPVGPGRGSGAGSLVAYVLKITDLDPLAYDLLF 347

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPDFD+DFC D RD VI YV   YG   V+QIITFG++ AKA +RDV R 
Sbjct: 348  ERFLNPERISMPDFDVDFCMDGRDRVIDYVAEAYGRNAVSQIITFGTMAAKAVVRDVARV 407

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
                Y   DRL K+IP +    +      ++   R+    D     + E++ KLEG+ R 
Sbjct: 408  QGKSYGLADRLSKMIPFEVGMTLEKAYEMEEP-LRDFLAVDEDAREIWEMALKLEGITRG 466

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HA G+VI    L+   P+  D      VTQF+   +E+AGL+KFDFLGL+TLT+++ 
Sbjct: 467  TGKHAGGVVIAPTKLTDFAPIACDEEGGGLVTQFDKDDVEQAGLVKFDFLGLRTLTIIKW 526

Query: 585  SLDFLAQRG-----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            +L+ + +         V++  IP DD  TY LL    T  +FQLES GM++ ++ ++PDC
Sbjct: 527  ALETINREQAKKGLEPVNIDFIPLDDKPTYQLLQKAETTAVFQLESRGMKELIKKLKPDC 586

Query: 640  IEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQ 692
            +ED+IALV+L+RPGP+ + +   + NRK+G+ ++   HP      ++P+LK T G+I+YQ
Sbjct: 587  LEDLIALVALFRPGPLQSGMVDDFINRKHGRAEVSYPHPDYQYAGLEPVLKPTYGIILYQ 646

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVMQIAQ+++GY+L  AD+LRRAMGKK  EEM KQ+  FI G + NGI   +A NIF+L
Sbjct: 647  EQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAKQRGGFIEGCANNGIDADLAGNIFDL 706

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + KFA YGFNKSH+AAY ++SYQTAW+K H+P  F+AA ++ +M N +K+    ++ R  
Sbjct: 707  VEKFAGYGFNKSHSAAYGLVSYQTAWLKAHHPSPFMAAVLSADMHNTDKVVILIEECRSM 766

Query: 813  NIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
             ++I PP VN     F V  D RI Y L A+KGVG      I E  A+  PF  L DFC+
Sbjct: 767  KLRIDPPDVNVSEFKFTVNDDGRIVYGLGAVKGVGEGPVDAIAECRAEGGPFKDLFDFCA 826

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWV 915
            R+D K++N+R LE+L+ +GALD  G                +R  LL +++   + A+  
Sbjct: 827  RIDLKRINKRTLEALIRSGALDRLGPYFFEEAKAYQANIDRNRAVLLAAMEEAVQAAEQT 886

Query: 916  EKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
             ++  + H ++F          +          +   R + E+  LG Y +GHP+D Y+ 
Sbjct: 887  ARSAESGHMDLFGGLFAEPEADVYGNHRNARELSLKERLKGEKDTLGLYLTGHPIDEYEG 946

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +R+   +   +           +A ++V+ +  K +KG ++G++T  + +   EA+ F
Sbjct: 947  EIRRFARQRIIDLRPARGEQ--TIAGLIVNLRVMKNKKGDKMGFITLDDRSGRIEASLF 1003


>gi|225012068|ref|ZP_03702505.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium MS024-2A]
 gi|225003623|gb|EEG41596.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium MS024-2A]
          Length = 1436

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/1068 (32%), Positives = 557/1068 (52%), Gaps = 61/1068 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            FVHL  HS +S+L+    ++ +++  A+ + PA+AITD  NL  A  F +   A      
Sbjct: 253  FVHLHNHSQFSVLQATSRISQLVEATASYKMPAVAITDHANLMGAFHFIKAIKAHNKDLE 312

Query: 67   ----IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                I+PIIGC+  +         +  ++       +V L    +GY  L ++ S  Y +
Sbjct: 313  EAQQIKPIIGCEFYVCDD------HTDRSRRDDGYQMVFLAKNKKGYHNLAKMTSMAY-V 365

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +      RI    +++   E LI+L+G   G +         + AE+ L  +   F +  
Sbjct: 366  NGFYYVPRIDREIVKQY-KEDLIVLSGNMYGELASKILNLGDRQAEEALQWWYSEFKEDF 424

Query: 183  YVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ L RH      R  + +V+LA  +++PL+ATNN+ +  +E+  AHD+L+ V      +
Sbjct: 425  YIELMRHGEEGEDRANAVLVKLALQYDIPLIATNNTYYTKKEEANAHDILLCVKEGEKQA 484

Query: 242  QK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                            ++Y K+  EM ++F+D+PEA+ N   +  +          +LP+
Sbjct: 485  TPIGRGRGFRYGFPNHEYYYKSPEEMKALFADIPEAITNIGALIDKIESFDLAREVLLPK 544

Query: 295  FIEKECD------DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
            F   E        D +K E   L      G E          G  +++ ++R+DFEL VI
Sbjct: 545  FEIPESYQIHEDSDGKKGENKYLHYLTYQGAEK-------RYGTLSEEIKERIDFELGVI 597

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
            A+  + GYFLIV D I  A+  ++ VGPGRGS AGSV AY L IT+IDP+++ LLFERFL
Sbjct: 598  AKTGYPGYFLIVQDLIAAARDLDVSVGPGRGSAAGSVVAYCLKITNIDPIKYDLLFERFL 657

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NPDR+SMPD DIDF  + R +V+ YV  KYG  +VAQIIT+G++ AK+++RD  R L +P
Sbjct: 658  NPDRVSMPDIDIDFDDEGRSKVMDYVIKKYGSNQVAQIITYGTMAAKSSIRDTARVLDLP 717

Query: 469  YSQVDRLCKLIPN------------DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
              + DR+ KL+PN            +    +    +   +  +     D      ++ + 
Sbjct: 718  LGEADRIAKLLPNIKLAKLFSSSDKELKETLRNDEVLRVNEIKNLADEDSLSGETIQQAI 777

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             LEG  R+  THA G++I    ++Q VP+     SDL VTQF+   +E AGL+K DFLGL
Sbjct: 778  VLEGSLRNTGTHACGVIITPDDITQFVPVATAKDSDLYVTQFDNSVVEDAGLLKMDFLGL 837

Query: 577  KTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            KTLTL++ ++  +  +  + +D    P DD +TY L     T+GIFQ ES+GM++ L+ +
Sbjct: 838  KTLTLIKDTVKLVKYKHNIDLDPDTFPLDDEKTYELFQRGDTVGIFQYESAGMQKYLKDL 897

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
            +P    D+IA+ +LYRPGP++ I  + +RKNG E+I    P++   L+ET G+ +YQEQV
Sbjct: 898  KPTVFADLIAMNALYRPGPLEYIPSFVDRKNGNEEISYDLPVMAEYLEETYGITVYQEQV 957

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M ++Q L+G+S  +ADVLR+AMGKKI   + K K +FI G   NG  + I   I++    
Sbjct: 958  MLLSQKLAGFSKGDADVLRKAMGKKIFALLQKLKPQFIEGGKNNGHPEEILEKIWKDWEA 1017

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSH+  YA+I YQTA++K HYP E++AA ++  M +++++  F ++ R+  + 
Sbjct: 1018 FAAYAFNKSHSTCYALIGYQTAYLKAHYPAEYMAAVLSNNMSDIKQVTFFMEECRRLGLN 1077

Query: 816  IMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
            ++ P VN     F V D   I + + AIKGVG      I+E   D+ ++S+ D   R+D 
Sbjct: 1078 VLGPDVNESFYKFAVNDQQAIRFGMGAIKGVGKGAVDTIIEHRKDQRYESIFDLVKRIDL 1137

Query: 875  KKLNRRVLESLVFAGALDCF-GYSRMQLLQ-------SLDNIQKYAQWVEKNRTNKHENI 926
            +  N++  E+L  AG  D F    R Q           L+ + ++    ++N  +   ++
Sbjct: 1138 RAANKKAFENLALAGGFDSFLNVKRAQYFNPDGDGVTFLEKVLRFGSKYQENLNSSQTSL 1197

Query: 927  FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            F  E  +    +T+       + +R + E+ V+G Y S HPLD +   +         + 
Sbjct: 1198 FGEETNSTYQDLTIPDCEAWTNLIRLKKEKEVVGIYISSHPLDDFTHEIEHFVTLSLNQL 1257

Query: 987  VATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             A  +       +  +V   Q  ++R G         + + +YE   F
Sbjct: 1258 GALDQLVNREFSIGGIVNEIQHLESRNGKGWARFIVEDFSDQYEFRIF 1305


>gi|206895524|ref|YP_002247456.1| DNA polymerase III subunit alpha [Coprothermobacter proteolyticus DSM
            5265]
 gi|206738141|gb|ACI17219.1| DNA polymerase III subunit alpha [Coprothermobacter proteolyticus DSM
            5265]
          Length = 1128

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1039 (37%), Positives = 582/1039 (56%), Gaps = 56/1039 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL VHS+YSLL+G      ++ +      PAIAITD    +  +EF  +A  
Sbjct: 1    MANQ--FVHLHVHSAYSLLDGVTLPKKLVQRAKDLGMPAIAITDHGVTYGLVEFVSEAQR 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI+G +     +D  K              +VLLV  A G++ L  L+++ YL + 
Sbjct: 59   LGIKPIVGVEGYQAQRDRKKRE---GNKDKEPFHLVLLVKNALGFRNLNILLTKAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 R     L++   EGLI  +   +G I RA      + A +    ++ +FG    Y
Sbjct: 115  FYYRPRFDWELLEQYH-EGLIASSACLAGAIPRALLEGDEKKALELAGRYQDIFGKGNFY 173

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +  H   D+ R    +V+L+    +PL+ TN+  +   E+Y   DVLMA+A    ++ 
Sbjct: 174  LEIMDHNLADQQRVNKAIVELSKRTGIPLLVTNDVHYGRPEEYSIQDVLMAIATGATLND 233

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             +R +  T   YLK+  EM   FS+ PEAL N++ IA    F+L +    LP+F   E  
Sbjct: 234  PNRFKYETDQMYLKSADEMWERFSETPEALLNSLAIAEMVDFMLPLGEQHLPKFSVPEG- 292

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                 E + LR     GL  R           +++   R+++EL+VI +M F+GYFLIV 
Sbjct: 293  ---YTENSYLRKLTQDGLLKRYGDN------PSKEVLDRMEYELSVIEKMGFAGYFLIVQ 343

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D+I WAK   IPVGPGRGS AGS+ AY   ITD+DPL++ LLFERFLNP+R+SMPD D+D
Sbjct: 344  DYINWAKSQGIPVGPGRGSAAGSLVAYLTGITDVDPLQYGLLFERFLNPERISMPDIDVD 403

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC  RRDEV+RYV+NKYG E VAQI TFG+L A+AA+RDVGR L +P + VDRL K IP 
Sbjct: 404  FCARRRDEVLRYVRNKYGEENVAQIATFGTLAARAAIRDVGRVLGVPLALVDRLSKSIPQ 463

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +      L         +     +P + R+LEI++++EGL RHASTHAAG+VI D+PL +
Sbjct: 464  NM----ELAHAEKLDDVKNLISQNPDLARVLEIAKQVEGLPRHASTHAAGVVIADKPLYE 519

Query: 542  LVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
             V +            TQ     +EK GL+K DFLGL+ +T++  +L ++ +R  + VDL
Sbjct: 520  YVALQASSDEAGINVTTQLAKDDVEKLGLLKMDFLGLRNMTVISDALRWIKERYGIDVDL 579

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +  DD + Y +L+   T+ +FQLESSG R  L+ ++P   E+IIA  +LYRPG + + 
Sbjct: 580  NKLSKDDSKVYEMLSAGETVAVFQLESSGFRSFLKDLKPTRFEEIIAAEALYRPGTLGSG 639

Query: 659  VV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             V  Y +RK+G+E +   H  + P+L+ET G+I+YQEQ+MQIA +++GYSL EADVLRRA
Sbjct: 640  GVKSYVDRKHGREPVDYFHDDLKPILEETYGIIVYQEQIMQIASVIAGYSLGEADVLRRA 699

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            + KK +EE+ K +E F+S   + G ++     I+E +  FA+YGFNKSH+AAYA ++Y T
Sbjct: 700  ISKKKEEEILKLREDFVSRGVQRGYARETVEKIYETIVHFAEYGFNKSHSAAYAHVTYYT 759

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRI 835
            AW+K++YP E+ AA +   +DN EK+K +  +AR+  I+I+PP VN     F    +N I
Sbjct: 760  AWLKSYYPTEYFAALLASFVDNTEKLKVYISEARRLGIKILPPDVNKSEHYFIPEGENEI 819

Query: 836  YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             + L  IK VG      I++  A   PF S +DF  RV+ + +N++V ESL+ AGA D  
Sbjct: 820  RFGLLGIKNVGLAAVEEILKTRATGGPFSSFQDFLLRVNDRVVNKKVTESLIRAGAFDSL 879

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            G  R  LL+ L                  + +F   + T +D ++L+             
Sbjct: 880  G-DRKSLLRQLSTGITT------------QTLF-QIEDTSNDDLSLDPMED--------- 916

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+  LG Y + HPL+ Y  IL    +    +SV  I G  +++   V S + +K+R  ++
Sbjct: 917  EREYLGLYITTHPLERYMAILSNQNLTAL-DSVGEIDG-LVQVGGFVSSTRVRKSRNNNQ 974

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
                T  +   + E    P
Sbjct: 975  YMTFTLEDLTSQVEVTVLP 993


>gi|255034240|ref|YP_003084861.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053]
 gi|254946996|gb|ACT91696.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053]
          Length = 1216

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/1096 (31%), Positives = 550/1096 (50%), Gaps = 85/1096 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL  H+ +SLL+GA  +  +  K   D  PA+AITD  N+F   EF  +    GI+PI
Sbjct: 3    FSHLHCHTQFSLLDGAADIKKLFKKAKEDNMPAVAITDHGNMFGVFEFVAEGNKQGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+  +    +++   + K         +LL     GY+ L+++ S  ++     +  R
Sbjct: 63   VGCEFYVVEDRHVRQFTKDKK--DVRHHQLLLAKDEIGYKNLVKMCSLGFIEGMYGKYPR 120

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    + +   +GLI  T      I +       + AE+    +  LFGD  YV LQRH 
Sbjct: 121  IDKDLIVQYH-KGLIATTCCIGAIIPKTIIRQGEEAAEREFKWWLDLFGDDFYVELQRHD 179

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK------ 243
              D+Y     +++ A  + + ++ +N+S ++  +D+ AHD+L+ +      S        
Sbjct: 180  IRDQYIVNEVLIKFARKYNVKIICSNDSHYVDRDDWNAHDILLCINTGDKQSTPSAKDFD 239

Query: 244  ---------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                              Y K  SEM+ +F+DLPE+L+NT EI  +   +      +LP 
Sbjct: 240  DEKGIPKGSRFAFYNDQFYFKKTSEMLQLFNDLPESLDNTNEIVDKIKTLDLRKDILLPN 299

Query: 295  FIEKECDDIQKEEE---------------NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
            F   +        E                 LR+    G                 +  +
Sbjct: 300  FPIPDEFKTHTLSEMVGKKELTADVLNQWEYLRHLTFEGARK-------KYDVVTPEIEE 352

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RL+FEL  I  M F GYFLIVADFI   +K  + +GPGRGS AGS  AYA+ IT+IDP++
Sbjct: 353  RLNFELQTIRNMGFPGYFLIVADFIDAGRKMGVFIGPGRGSAAGSAVAYAIGITNIDPVK 412

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            + LLFERFLNPDR+SMPD D DF  D R +VI YV  KYG+ +VAQI+T+G++ AK+A++
Sbjct: 413  YDLLFERFLNPDRISMPDIDTDFDDDGRQKVIDYVVKKYGYNQVAQIVTYGTMAAKSAIK 472

Query: 460  DVGRALQMPYSQVDRLCKLIPNDP----------------------AHPVSLQAIADDSR 497
            DV R + +P    + L KL+P+ P                         +S   + +  R
Sbjct: 473  DVARVMDLPLPDANMLAKLVPDKPTYNMTLNRIFTAPLEGEGSLMKKEGISPDELENVKR 532

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
             R   + +     +L+ +++LEG  R+   HAAGI+I    L++++P+     SD  +TQ
Sbjct: 533  MRAIAVGNDLQASVLQEARRLEGTVRNTGIHAAGIIIAPSDLTEIIPVSTSKDSDFLITQ 592

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKG 616
            +  K IE AG+IK DFLGL+ L++++++L  +       + +  +P DD + + L     
Sbjct: 593  YQGKIIEDAGVIKMDFLGLRNLSIIKEALRMIKNNYGHDIVIDDVPLDDPKVFELFQRGE 652

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            T  IFQ ES GM++ +  + PD  E +IA+ +LYRPGPI  I  +  RKNG+E++    P
Sbjct: 653  TNAIFQFESDGMKKYMRDLIPDRFEHLIAMNALYRPGPIAYIPNFIRRKNGQEEVTYDLP 712

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
             ++  L +T G+ +YQEQVM ++Q L+G++  +AD LR+AMGKK  E ++K K  F+ G 
Sbjct: 713  ELEEYLADTYGITVYQEQVMLLSQKLAGFTKGQADTLRKAMGKKQIETLNKLKGDFMKGG 772

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
            ++ G+       I+     FA Y FNKSH+  YA ++YQTA++K HYP E++AA +T  +
Sbjct: 773  TEKGLDAKKLEKIWTDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYPAEYMAAVLTSSL 832

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIME 855
             +++KI  F ++ +  ++ ++ P +N     F V     I + LA +KG G      I+E
Sbjct: 833  GSIDKITFFMEECKNLSLPVLGPDINESERQFSVNKKGEIRFGLAGVKGSGDAAVESIIE 892

Query: 856  AS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS--------L 905
                  PF  + DF +RV+ + +N++ LESL +AGA DCF  Y R Q   +        +
Sbjct: 893  ERAKGGPFKDVFDFMTRVNLRTVNKKTLESLAYAGAFDCFTDYHRAQYFTAEQGENGTFI 952

Query: 906  DNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
            + + +YA      +++   ++F    + G+   K         +   +   EQ V+GFY 
Sbjct: 953  EKLIRYANNYHAEKSSAQASLFGMLGDSGSTLAKPKAADIGPWDDLAKLRYEQEVVGFYI 1012

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNN--------IRLAAMVVSKQQKKTRKGSRI 1015
            SGHPLD ++  L        ++ +    G          I +A +V S Q++ ++ GS  
Sbjct: 1013 SGHPLDTFRAELDNFCNCTLDKVMEINEGERAPKYYGKDINVAGIVTSAQERMSKNGSLF 1072

Query: 1016 GWVTFSEPAKEYEANF 1031
                  +     E   
Sbjct: 1073 MIFKIEDYQGAMEMLI 1088


>gi|241763389|ref|ZP_04761444.1| DNA polymerase III, alpha subunit [Acidovorax delafieldii 2AN]
 gi|241367431|gb|EER61742.1| DNA polymerase III, alpha subunit [Acidovorax delafieldii 2AN]
          Length = 1198

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1062 (38%), Positives = 594/1062 (55%), Gaps = 55/1062 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
               P FVHL++H+ +S+++G   ++++    A D QPA+AITD NNLF A++F ++A   
Sbjct: 13   TMEPMFVHLRLHTEFSVVDGTNRIDDLAKAAAKDGQPALAITDLNNLFGAIKFYKEARGK 72

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G++PI+G ++ ++ +                  +++LV   +GY  L EL++R +  +  
Sbjct: 73   GVKPILGAEIFLEGE-----------AGAAPSRMLVLVQGRQGYLNLSELLARAWTRNVV 121

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            K        WLQE+G EGLI + G  +GP+ +A        A    L    +F  R Y+ 
Sbjct: 122  KAQAICTWDWLQELG-EGLIAIAGAQAGPVGQALMKGDDAGAAALALRLAGIFPHRFYIE 180

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +QR  R  D       VQLA    LP+VAT+   F + +DYEAH+  + +A   ++  + 
Sbjct: 181  VQRAGRADDEAHVVAAVQLAARLHLPVVATHPVQFATADDYEAHEARVCIAEGEILGNQR 240

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R R  T + Y K+ ++M ++F+DLP AL N+VEIARRC+  L +  P LP F     +  
Sbjct: 241  RVRKFTREQYFKSSAQMQALFADLPTALANSVEIARRCNITLVLGKPQLPNFPIPPVNGQ 300

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                ++  R+ +  GLE RL         +      Y +RL+FEL  I +M F GYFLIV
Sbjct: 301  VLSVDDYFRHVSFEGLEERLRLLFPDEARRNVERPRYVERLEFELGTILKMGFPGYFLIV 360

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFIQWAK +  PVGPGRGSGAGS+ AYAL ITD+DPL ++LLFERFLNP+R+SMPDFDI
Sbjct: 361  GDFIQWAKTHGCPVGPGRGSGAGSLVAYALKITDLDPLEYNLLFERFLNPERVSMPDFDI 420

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR + M Y+  D + KL+P
Sbjct: 421  DFCQSNRDRVIDYVKEKYGKDAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVP 480

Query: 481  NDPAHPVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
              P    +                A+  +    E    +  V  ++E++QKLEG+ R+  
Sbjct: 481  GKPGMSYTLQYPPEVKKDGDKNNYALELEPLLYERVRKEEDVKTVIEMAQKLEGMTRNIG 540

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HA G++I    L+   P+Y+   S+  V+Q++   +E  GL+KFDFLGL TLT+L+ + 
Sbjct: 541  MHAGGVLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAR 600

Query: 587  DFLAQRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +F+ +R           IP DD  TY L +   T  +FQ ES GM+  L   +P  +ED+
Sbjct: 601  EFIMKRHKGQENFAYENIPLDDGPTYRLFSEGKTEAVFQFESRGMQGMLREARPSRLEDL 660

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            IAL +LYRPGP+D I  + NRK+GKE +   HPL++P+L ET G+++YQEQVMQ AQ+L 
Sbjct: 661  IALNALYRPGPMDLIPTFVNRKHGKEPVEYPHPLVEPVLSETYGIMVYQEQVMQTAQVLG 720

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            GYSL  AD+LRRAMGKK  EEM + +  F  GA++ GIS+  A  +F+L+ KFA YGFNK
Sbjct: 721  GYSLGGADMLRRAMGKKKAEEMAEHRAIFRKGAAEKGISQDKADEVFDLMEKFAGYGFNK 780

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVN 822
            SHAAAY++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA++   +   PP VN
Sbjct: 781  SHAAAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDAKKNFGLTFEPPDVN 840

Query: 823  TPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSR 871
                 F+ V D  I Y L A+KG G      I+ A              PF SL DFC R
Sbjct: 841  RGMYRFEPVTDKVIRYGLGAVKGTGQQAIEAIVAAREGRGEGPQGSTKGPFKSLFDFCVR 900

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--- 928
            VD  +LN+R +E+L+ AGA D    +R  ++ S+D    +A     N       +F    
Sbjct: 901  VDRARLNKRTVEALIKAGAFDALNLNRAAMVASIDRAFDFAAATLANV--NQGGLFDMMG 958

Query: 929  -HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                G+ + +  L          R   E+  +GFY SGH  D     +R+      +E +
Sbjct: 959  EDAHGSSTQEPDLVDAVPWGIKERLTQEKTAVGFYLSGHLFDEVAQEVRRFVRTQIDELL 1018

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
             +       LA ++   +    ++G   G     + +   EA
Sbjct: 1019 DSREPQ--ILAGIISDFRVINGQRGKL-GLFRLDDKSGVIEA 1057


>gi|317503779|ref|ZP_07961791.1| DNA-directed DNA polymerase III alpha subunit [Prevotella salivae DSM
            15606]
 gi|315665076|gb|EFV04731.1| DNA-directed DNA polymerase III alpha subunit [Prevotella salivae DSM
            15606]
          Length = 1235

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1116 (31%), Positives = 549/1116 (49%), Gaps = 103/1116 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62
             F+HL VH+ YS+L+G   ++ ++DK   +    +A+TD   +F   EF+          
Sbjct: 3    DFIHLHVHTYYSILDGQSKISRLVDKAVENGMKGMALTDHGVMFGIKEFADYCAGVNKKR 62

Query: 63   CAAGI---QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
             A G+   +PI GC++ +          +      +   +++L     GY+ LI+LVS+ 
Sbjct: 63   KAEGLEPFKPIFGCEMYVAHHRLHDKVKEHG--DNSGYHLIVLAKNYNGYKNLIKLVSKS 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            ++ D      R   + L++   E LI+ +   +G +         + A +    + ++FG
Sbjct: 121  WI-DGYYYRPRTDRTELEKYH-EDLIVCSACIAGEVPSKIIKGDLEGAREACEWYHRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     +++ A  + + ++ TN+  F  +E  E
Sbjct: 179  DDYYLELQRHEVKDPTILANREAFPLQQKANKVLLEFAKEYGIKVICTNDVHFEDKETAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++    +   +R R +   + K+R EM  +FSD+PEAL NT+EI  +      
Sbjct: 239  AHDHLLCLSTGKDLDDPNRMRYSKQEWFKSREEMNEVFSDVPEALTNTLEILNKVEHYSI 298

Query: 287  VHAPILPRFIEKECDDIQKE---------------------------------------- 306
             H PI+P F   E    ++E                                        
Sbjct: 299  EHGPIMPFFPIPESFGTEEEWKLKFSEADLYKEFTSDENGENQLSPEEGQKVIERLGGYD 358

Query: 307  -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E + L   A  G +               + ++ ++FEL+V+  M F GYFLI
Sbjct: 359  KIYRIKFEADYLAKLAHDGAKKLYGDP------IPSNVQEHINFELHVMKTMGFPGYFLI 412

Query: 360  VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V DFI  A+   ++ VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD 
Sbjct: 413  VQDFINAARTELDVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R +V+R+V +KYGHE  A IIT+ S+  K +++DV R  ++P  + + LCK 
Sbjct: 473  DTDFDDDGRGKVLRWVMDKYGHENCAHIITYASMATKNSIKDVARVEKLPLDKSNFLCKA 532

Query: 479  IPNDPAHPVSLQ---AIADDSRFREARLADP-SVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP+     + +    AI      R+A ++        ++ ++ LEG  R    HA G +I
Sbjct: 533  IPDRLPDGLKMNLTNAIKCTPELRDAEVSQDLRERNTIKYAKMLEGTVRGTGIHACGFII 592

Query: 535  GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               P+S  VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ L+++   +
Sbjct: 593  CRDPISNWVPVSTADDPDYPGFKTAVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVV 652

Query: 590  AQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             +      DL  IP DD  TY L     T+G FQ ES GM++ L  + P   ED+IA+ +
Sbjct: 653  KKTKNIDVDLDTIPIDDELTYQLYQQGRTIGTFQFESPGMQKYLRELHPTVFEDLIAMNA 712

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RKN   ++    P ++  LK+T G+ +YQEQVM +++ L+ ++  
Sbjct: 713  LYRPGPMDYIPDFIKRKNDPTQVSYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E+D LR+AMGKK K  +D  K +FI   ++NG    I   I+    KFA Y FNKSHA  
Sbjct: 773  ESDALRKAMGKKKKAIVDAMKPKFIKQGTENGHDPKILEKIWGDWEKFASYAFNKSHATC 832

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ ++YQTA+MK H+P E++AA MT     + +I K  ++ +   I  + P VN    +F
Sbjct: 833  YSWVAYQTAYMKAHFPAEYMAALMTRRFSQITEITKLMEECQSMKIATLGPDVNESYSEF 892

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V     I + L+AIKG+G   A+ I++   A+ PF  + DF  R+D   +NR+  ESL 
Sbjct: 893  GVNKRGEIRFGLSAIKGMGEMAAQSIVKEREANGPFKDIYDFAQRIDFSNVNRKAFESLA 952

Query: 887  FAGALDCFGYSRMQLLQ-------SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
             +G  D F Y R Q           LD + +Y Q  ++ +     ++F  E      +  
Sbjct: 953  LSGGFDGFEYRREQYFAPGMKGDVFLDTLVRYGQLYQQEQREARNSLFGGESAVEISRPI 1012

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIR 996
              KF   ++  R   E+ ++G Y S HPLD Y  IL+ +      E       ++   I 
Sbjct: 1013 PGKFEEWSTIERLNRERDLVGIYLSAHPLDEYGVILKSLCNTHCTELDKKEELVKKEEIS 1072

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  +V   + K T+ G   G+VT  +     E  FF
Sbjct: 1073 IGGIVTGVKSKFTKTGKPCGFVTIEDFEGSGELAFF 1108


>gi|15616854|ref|NP_240067.1| DNA polymerase III alpha chain [Buchnera aphidicola str. APS
            (Acyrthosiphon pisum)]
 gi|11132275|sp|P57332|DPO3A_BUCAI RecName: Full=DNA polymerase III subunit alpha
 gi|25288552|pir||A84958 DNA-directed DNA polymerase (EC 2.7.7.7) alpha chain [imported] -
            Buchnera sp. (strain APS)
 gi|10038918|dbj|BAB12953.1| DNA polymerase III alpha chain [Buchnera aphidicola str. APS
            (Acyrthosiphon pisum)]
          Length = 1161

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1049 (39%), Positives = 614/1049 (58%), Gaps = 41/1049 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL VHS YS+++G     +++ K A+   PAIAITD NNL+  ++F   A   G
Sbjct: 2    NEPKFIHLHVHSDYSMIDGLSKPEDLVKKAASLNMPAIAITDYNNLYGVIKFYNMAHKLG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG  ++                   +  + LL ST EGY+ LI L+SR Y      
Sbjct: 62   LKPIIGITVNF----------FSDLINNQLTKLTLLASTQEGYKNLILLISRAYQKGYVH 111

Query: 127  QS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
             + V I   W  EI  +GLI+L+GG  G + +      S +    L  ++K F D  Y+ 
Sbjct: 112  NNHVTIEKKWFSEI-NKGLILLSGGPQGELGKVLLNGQSSLISICLSFYQKYFPDSYYLE 170

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQK 243
            L R +R  +       V L+ +  +P+VATN+  FLS+ED++ H + +A+     +   K
Sbjct: 171  LFRTNRDNEETYLHLAVDLSLSTGVPIVATNDVCFLSQEDFKIHKIRIAINEGEILQHSK 230

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             +   +   +LK   EM  +FSD+PEAL N+VEIA+RC+  +        ++   +    
Sbjct: 231  IQNNYSNQQFLKTTEEMSDLFSDIPEALINSVEIAKRCNVFI-----HSGKYFLPQFRTG 285

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ---RLDFELNVIARMKFSGYFLIV 360
            +   E  L  +A  G++ RL    +    +   Y Q   RLD EL VI +M F GYFLIV
Sbjct: 286  KISVEKYLIKEAYKGIKKRLNSRYLDIEKYKDIYSQYINRLDMELTVINKMGFPGYFLIV 345

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQWAK NNIPVGPGRGSGAGS+ AYAL IT++DPL F+LLFERFLNP+R+SMPDFDI
Sbjct: 346  MEFIQWAKDNNIPVGPGRGSGAGSLVAYALNITEVDPLSFNLLFERFLNPERISMPDFDI 405

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC ++RD+VI +V   YG   VAQIITFG+L AKA +RDVGR L  PY  +++L KL+P
Sbjct: 406  DFCMEKRDQVIDHVSEIYGKNAVAQIITFGTLTAKAVIRDVGRVLGYPYGFINKLSKLVP 465

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   +  +A + +S        +  V  L++I++KLEG  R+   HA G+VI    ++
Sbjct: 466  LDPGITLK-EAFSKESELFNLYKNNEDVKNLIDIAKKLEGTNRNIGKHAGGVVISPTKIT 524

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-----LAQRGVK 595
               P+Y D + + PVTQF+   IE  GL+KFDFLGL+TLT++  +++         +   
Sbjct: 525  DFCPLYCDEKGNNPVTQFDKNDIEYIGLVKFDFLGLRTLTIISYAVEMINTKLNLNKKRT 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            ++++ IP DD + + LL    T G+FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+
Sbjct: 585  ININSIPLDDAKCFKLLKNSETTGVFQLESYGMKDLIKRLQPDCFEDMIALVALFRPGPL 644

Query: 656  DNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V       +             H L+ P+L+ T G+I+YQEQVM+IAQ+LSGY+L 
Sbjct: 645  QSGMVDNFINRKHGRENISYPDHKWQHILLKPILESTYGIILYQEQVMEIAQVLSGYTLG 704

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAM KK  ++M +Q+  F  GAS NGI K +++ IF+LL KFA YGFNKSH+ A
Sbjct: 705  SADILRRAMSKKNLKDMSEQRAIFEEGASNNGIDKKLSIKIFDLLEKFAGYGFNKSHSVA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+K+HYP EF+AA+MT ++DN EKI     ++    ++I+PP++N    +F
Sbjct: 765  YALVSYQTLWLKSHYPAEFIAAAMTSDIDNTEKIVILINESLNMGVKIIPPNINLSKYEF 824

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886
             V D   I Y L AIKG+G  + + +++   +   F  L D C R+DS+K+ RRVLE L+
Sbjct: 825  YVNDQGDIVYGLGAIKGIGKNSVQVLIKEREENKFFHDLFDLCMRIDSQKITRRVLEKLI 884

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFS 944
             +G+ DCF  +R  LLQS+D+    ++   + ++ K +++F   +   +   K  L    
Sbjct: 885  MSGSCDCFDKNRNYLLQSIDDAINASKESFRIKSFKQDSLFGIFQNELNQVKKNNLVNL- 943

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILR-KMGIKGYEESVATIRGNNIRLAAMVVS 1003
            V     + +NE +VLGFY +GHP++ YK  L   +      +     R   I +A ++VS
Sbjct: 944  VCPEKNKLQNEYQVLGFYLTGHPINQYKKELECYVNGVKLSQLKFIKRNKKILVAGIIVS 1003

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + K T+  +RI  +   +     E   F
Sbjct: 1004 IKIKITKNKNRIAILVLDDNTSRLEVVIF 1032


>gi|301308097|ref|ZP_07214051.1| DNA polymerase III, alpha subunit [Bacteroides sp. 20_3]
 gi|300833567|gb|EFK64183.1| DNA polymerase III, alpha subunit [Bacteroides sp. 20_3]
          Length = 1267

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1146 (31%), Positives = 574/1146 (50%), Gaps = 134/1146 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA----- 65
            F+HL VH+ YSLL+G  S++ ++DK   D   AIA+TD   +F   EF  K         
Sbjct: 4    FIHLHVHTQYSLLDGQASIDALIDKAYKDGMRAIAVTDHGVMFGIKEFFNKVSKKNSKPL 63

Query: 66   GI----------------------------------------QPIIGCQLDIDMQDNLKM 85
            GI                                        +PIIGC+           
Sbjct: 64   GIIKDSEKELKPLLTKDAPTDEEQQRITELQKQIAEAKASIFKPIIGCECYCARNGRHSK 123

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
                     +   +++L     GY+ LI++VS  +  +      RI    L++   + LI
Sbjct: 124  LASQDDR--SGWHLIVLAKNKNGYKNLIKMVSLSWT-EGFYGRPRIDKELLEKYHKD-LI 179

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-----------R 194
            + +    G I +         AE+ +  FK LFG+  Y+ +QRH  +D           +
Sbjct: 180  ICSACLGGEIPQHIMHGRIDKAEESIKWFKNLFGEDYYLEMQRHETHDPNADCTIFPHQQ 239

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                 +++LA+ H + L+ATN+  F++ +D EAHD L+ ++    +    R R +   ++
Sbjct: 240  EVNKVLIELAHKHNIKLIATNDVHFVNADDAEAHDRLICLSTGKDLDDPKRMRYSKQEWM 299

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE-------- 306
            K  +EM +IF+D+PEAL NT+EIA +  F      PI+P F   E    ++         
Sbjct: 300  KTTAEMNTIFADIPEALSNTLEIADKIEFYSIDSGPIMPTFAIPEEFGTEESYRQKLTEH 359

Query: 307  ---------------------------------------EENELRNKAVAGLEVRLAQGA 327
                                                   E + L      G +       
Sbjct: 360  DLFEEFTRDENGNVVLSEEEAHSKIKKLGGYDKLYRIKLEADYLAKLTYDGAKELYGDPL 419

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVT 386
                    + ++RL+FEL+++  M F GYFLIV DFI+ A++   + VGPGRGS AGS  
Sbjct: 420  ------NDEVKERLNFELHIMKTMGFPGYFLIVQDFIRAAREELGVSVGPGRGSAAGSAV 473

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AY L IT IDP+++ LLFERFLNPDR+S+PD D DF  D R EV+R+V  KYG ERVA I
Sbjct: 474  AYCLGITKIDPIKYDLLFERFLNPDRISLPDIDTDFDDDGRGEVLRWVTEKYGAERVAHI 533

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP---NDPAHPVSLQAIADDSRFREARL 503
            IT+G++  K+A++DV R  ++P S+ +RL KL+P    D        AI      +EA  
Sbjct: 534  ITYGTMATKSAIKDVARVQKLPLSESNRLAKLVPDKIPDMKKFKLGDAIKYVPELKEAAN 593

Query: 504  -ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY----RDVRSDLPVTQF 558
              DP     L+ +Q LEG  R+   HA G++IG   +S +VP+     +D   ++ VTQ+
Sbjct: 594  GNDPLARDTLKYAQMLEGNVRNTGVHACGVIIGRYDISDVVPVSTAKDKDTGEEMLVTQY 653

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGT 617
                IE+ GLIK DFLGLKTL++++++++ +        D+  I  +D +TY L     T
Sbjct: 654  EGSVIEETGLIKMDFLGLKTLSIIKEAIENVKLTTGHDLDIDHISLEDPKTYKLYCDGKT 713

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
             G FQ ES+GM++ L+ +QP   ED+IA+ +LYRPGP+D I  +  RK GKE+I    P+
Sbjct: 714  TGTFQFESAGMQKYLKELQPSKFEDLIAMNALYRPGPMDYIPSFIARKQGKEEIKYDIPV 773

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+ E+M+  K +F++G  
Sbjct: 774  MERYLKDTYGITVYQEQVMLLSRLLANFTRGESDALRKAMGKKLIEKMNHLKSKFMAGGQ 833

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
             NG  +     I+    KFA Y FNKSHA  Y+ ++YQTA++K ++P E++AA ++  + 
Sbjct: 834  ANGYKEETLNKIWSDWEKFASYAFNKSHATCYSWVAYQTAYLKANFPSEYMAAVLSRSLS 893

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEA 856
            N+  I KF  + +   IQ++ P VN   + F V  N+ I + L A+KGVG +  ++I+E 
Sbjct: 894  NITDITKFMDECKAMGIQVLGPDVNESILKFSVDKNKNIRFGLGAVKGVGESAVQNIIEE 953

Query: 857  S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNI 908
               + P+ S+ DF  RV+    N++ +ES+  AGA D FG  R Q           LD +
Sbjct: 954  RKKNGPYKSIFDFVERVNLTACNKKNIESMALAGAFDNFGILREQFFTDSGKGELFLDTL 1013

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +Y    + +++    ++F  +      K  + +    +   R   E+ ++G Y S HPL
Sbjct: 1014 VRYGNKYQMDKSTAVNSLFGGDALIAIAKPEIPQCERWSDLERLNKEKELVGIYLSAHPL 1073

Query: 969  DVYKPILRKMGIKGYEESVATI--RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            D Y+ IL+ +   G  E       +G  + L  +V   ++  T+ G   G +   +    
Sbjct: 1074 DEYRIILKYVCNTGMVELNERETLQGREVLLGGIVTGFREGMTKNGKPYGILKIEDFTGS 1133

Query: 1027 YEANFF 1032
             E   F
Sbjct: 1134 GEIPLF 1139


>gi|297538821|ref|YP_003674590.1| DNA polymerase III subunit alpha [Methylotenera sp. 301]
 gi|297258168|gb|ADI30013.1| DNA polymerase III, alpha subunit [Methylotenera sp. 301]
          Length = 1169

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/1047 (39%), Positives = 611/1047 (58%), Gaps = 41/1047 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K P FVHL+ HS YS+++G + +++ + +   D+ PA+A+TD +NLF A++F + A   G
Sbjct: 10   KQPIFVHLRCHSEYSIVDGIVRIDDYVKQALNDKMPALALTDLSNLFGAIKFYKTARGKG 69

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI+GC + ++                    ++LL  +  GY  L +L+SR YL +Q +
Sbjct: 70   IKPILGCDIWLEN----------TANRDQPTRLLLLCQSHAGYLLLCQLLSRAYLSNQYR 119

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                    W  E GTEGLIML+G  +G + +A   ++  +A K   +++ LF DR Y+ +
Sbjct: 120  GRAEFKREWFVECGTEGLIMLSGAIAGDVGQACTQDNLALATKLAQSWENLFPDRFYLEV 179

Query: 187  QRHRG--------------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            QR                        QV  +A++  LP+VAT+   F++ +D+ AH+   
Sbjct: 180  QRTASVAESSTPESNALQHQQENYIQQVRSIAHSLNLPIVATHPIQFITPDDFRAHEART 239

Query: 233  AVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
             ++   V++   RP+  T + Y K +++M ++F D+PEAL N+VEIA+RC+ +L +    
Sbjct: 240  CISEGYVLADTRRPKNFTTEQYFKPQADMATLFEDIPEALTNSVEIAKRCNLMLTLGKNY 299

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            LP F     + + +    E R   +  LEV      +        Y  RLDFE  VI +M
Sbjct: 300  LPNFPTPNNESLNEYLIAEARRGLLQRLEVLYPNEEVRAAKKP-AYDARLDFETKVINQM 358

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F+GYFLIVADFIQWAK N +PVGPGRGSGAGSV AY+L ITD+DPL ++LLFERFLNPD
Sbjct: 359  GFAGYFLIVADFIQWAKGNGVPVGPGRGSGAGSVVAYSLKITDLDPLEYNLLFERFLNPD 418

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPDFDIDFCQ+ RD VI YV+ KYG + V+QI TFG++ AKA +RDVGR L +P+  
Sbjct: 419  RVSMPDFDIDFCQEGRDRVIDYVKQKYGLDAVSQIATFGTMAAKAVIRDVGRVLDLPFYF 478

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            VD + KLIP +    +S  A+  + +  E R  +  +  LLE++ +LEGL R+   HA G
Sbjct: 479  VDGISKLIPLELGITLS-DALVKEPQLAERRENEEELKELLELALRLEGLVRNIGMHAGG 537

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            ++I    +S   P+Y        V+Q++   +E  GL+KFDFLGL+TLT+L+ +L    +
Sbjct: 538  VLISPGKISDFSPVYCQADGASLVSQYDKDDVEAVGLVKFDFLGLRTLTILELALANANK 597

Query: 592  RGVKVDL-----SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            +     L       +P +D  T+ LL T  T  +FQLES GM+  L+   PDC EDIIAL
Sbjct: 598  QRATEGLAPLSFETLPLNDKPTFQLLKTANTTAVFQLESKGMKDMLKQALPDCFEDIIAL 657

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            V+LYRPGP+D I  +  RK+GK+++   HPL +P+LKET G+ +YQEQVMQIAQ+++GYS
Sbjct: 658  VALYRPGPMDLIPDFCRRKHGKQRVEYPHPLTEPILKETYGIAVYQEQVMQIAQVVAGYS 717

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEMD Q++ F+ GA+KN +++  A+ +F+LL KFA YGFNKSHA
Sbjct: 718  LGGADLLRRAMGKKKVEEMDAQRKTFVEGATKNNMTERQAMELFDLLEKFAGYGFNKSHA 777

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA+++YQTA++K HYP  FLA++M+ +M+N + ++ F +D     ++I+ P VN    
Sbjct: 778  AAYALVAYQTAYLKAHYPAAFLASTMSADMNNTDSVRIFYEDCAPNQVKILSPDVNQSEY 837

Query: 827  DFK-VGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLES 884
             F  +  N++ Y L A+KG G      I+     D PF  L DFC+R+D +K+NRRV+ES
Sbjct: 838  KFTPISKNQVLYGLGAVKGTGQAAIEVILQARRKDGPFKDLFDFCNRLDLRKVNRRVVES 897

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L+ AGA D    SR  LL  +      A+    N  +   ++F       ++   L    
Sbjct: 898  LIRAGAFDKLSPSRNALLAGVAMAMAAAEQNSAN--SNQNSLFGEVADKAAN--ILPMVP 953

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                  R + E+  LGFYFSGHP   ++  L +             +     LA +V   
Sbjct: 954  DWTEQQRLQEEKAALGFYFSGHPYWAFQKDLSQFISTTLANL--APKEQPQLLAGIVSGV 1011

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            + + T +G  I  V   +     E   
Sbjct: 1012 RIRMTGRGK-IAIVGLDDGTTRLEVVV 1037


>gi|219681609|ref|YP_002467995.1| DNA polymerase III alpha chain [Buchnera aphidicola str. 5A
            (Acyrthosiphon pisum)]
 gi|257471295|ref|ZP_05635294.1| DNA polymerase III alpha chain [Buchnera aphidicola str. LSR1
            (Acyrthosiphon pisum)]
 gi|219624452|gb|ACL30607.1| DNA polymerase III alpha chain [Buchnera aphidicola str. 5A
            (Acyrthosiphon pisum)]
          Length = 1161

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1049 (39%), Positives = 615/1049 (58%), Gaps = 41/1049 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL VHS YS+++G     +++ K A+   PAIAITD NNL+  ++F   A   G
Sbjct: 2    NEPKFIHLHVHSDYSMIDGLSKPEDLVKKAASLNMPAIAITDYNNLYGVIKFYNMAHKLG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG  ++                   +  + LL ST EGY+ LI L+SR Y      
Sbjct: 62   LKPIIGITVNF----------FSDLINNQLTKLTLLASTQEGYKNLILLISRAYQKGYVH 111

Query: 127  QS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
             + V I   W  EI  +GLI+L+GG  G + +      S +    L  ++K F D  Y+ 
Sbjct: 112  NNHVTIEKKWFSEI-NKGLILLSGGPQGELGKVLLNGQSSLISICLSFYQKYFPDSYYLE 170

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQK 243
            L R +R  +       V L+ +  +P+VATN+  FLS+ED++ H + +A+     +   K
Sbjct: 171  LFRTNRDNEETYLHLAVDLSLSTGVPIVATNDVCFLSQEDFKIHKIRIAINEGEILQHSK 230

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             +   +   +LK   EM  +FSD+PEAL N+VEIA+RC+  +        ++   +    
Sbjct: 231  IQNNYSNQQFLKTTKEMSDLFSDIPEALINSVEIAKRCNVFI-----HSGKYFLPQFRTG 285

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ---RLDFELNVIARMKFSGYFLIV 360
            +   E  L  +A  G++ RL    +    +   Y Q   RLD EL VI +M F GYFLIV
Sbjct: 286  KISVEKYLIKEAYKGIKKRLNSRYLDIEKYKDIYSQYINRLDMELTVINKMGFPGYFLIV 345

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQWAK NNIPVGPGRGSGAGS+ AYAL IT++DPL F+LLFERFLNP+R+SMPDFDI
Sbjct: 346  MEFIQWAKDNNIPVGPGRGSGAGSLVAYALNITEVDPLSFNLLFERFLNPERISMPDFDI 405

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC ++RD+VI +V   YG   VAQIITFG+L AKA +RDVGR L  PY  +++L KL+P
Sbjct: 406  DFCMEKRDQVIDHVSEIYGKNAVAQIITFGTLTAKAVIRDVGRVLGYPYGFINKLSKLVP 465

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   +  +A + +S        +  V  L++I++KLEG  R+   HA G+VI    ++
Sbjct: 466  LDPGITLK-EAFSKESELFNLYKNNEDVKNLIDIAKKLEGTNRNIGKHAGGVVISPTKIT 524

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-----LAQRGVK 595
               P+Y D + + PVTQF+   IE  GL+KFDFLGL+TLT++  +++         +   
Sbjct: 525  DFCPLYCDEKGNNPVTQFDKNDIEYVGLVKFDFLGLRTLTIISYAVEMINTKLNLNKKRT 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            ++++ IP DD + ++LL    T G+FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+
Sbjct: 585  ININSIPLDDAKCFNLLKNSETTGVFQLESYGMKDLIKRLQPDCFEDMIALVALFRPGPL 644

Query: 656  DNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V       +             H L+ P+L+ T G+I+YQEQVM+IAQ+LSGY+L 
Sbjct: 645  QSGMVDNFINRKHGRENISYPDHKWQHILLKPILESTYGIILYQEQVMEIAQVLSGYTLG 704

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAM KK  ++M +Q+  F  GAS NGI K +++ IF+LL KFA YGFNKSH+ A
Sbjct: 705  SADILRRAMSKKNLKDMSEQRAIFEEGASNNGIDKKLSIKIFDLLEKFAGYGFNKSHSVA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+K+HYP EF+AA+MT ++DN EKI     ++    ++I+PP++N    +F
Sbjct: 765  YALVSYQTLWLKSHYPAEFIAAAMTSDIDNTEKIVILINESLNMGVKIIPPNINLSKYEF 824

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886
             V D   I Y L AIKG+G  + + +++   +   F  L D C R+DS+K+ RRVLE L+
Sbjct: 825  YVNDQGDIVYGLGAIKGIGKNSVQVLIKEREENKFFHDLFDLCMRIDSQKITRRVLEKLI 884

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFS 944
             +G+ DCF  +R  LLQS+D+    ++   + ++ K +++F   +   +   K  L    
Sbjct: 885  MSGSCDCFDKNRNYLLQSIDDAINASKESFRIKSFKQDSLFGIFQNELNQVKKNNLVNL- 943

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILR-KMGIKGYEESVATIRGNNIRLAAMVVS 1003
            V     + +NE +VLGFY +GHP++ YK  L   +      +     R   I +A ++VS
Sbjct: 944  VCPEKNKLQNEYQVLGFYLTGHPINQYKKELECYVNGVKLSQLKFIRRNKKILVAGIIVS 1003

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + K T+  +RI  +   +     E   F
Sbjct: 1004 IKIKITKNKNRIAILVLDDNTSRLEVVIF 1032


>gi|111223805|ref|YP_714599.1| DNA polymerase III subunit alpha [Frankia alni ACN14a]
 gi|111151337|emb|CAJ63049.1| DNA polymerase III alpha subunit [Frankia alni ACN14a]
          Length = 1177

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1067 (33%), Positives = 562/1067 (52%), Gaps = 49/1067 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S  FVHL VH+ YS+L+GA  L ++  +++  Q PA+AITD   ++ A +F ++A A
Sbjct: 1    MSNS--FVHLHVHTEYSMLDGAARLKDMFSEVSRQQMPAVAITDHGYMYGAYDFHKQATA 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG++PIIGC+  +  +  L                 +   +   + +    A+G + L  
Sbjct: 59   AGVKPIIGCEAYVAPESRLLKQRVRWGEPHQKSDDVSGGGSYTHMTMWARNADGLKNLFR 118

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L SR  +     +  R+    + E   +GL+  TG  SG +           A +   T+
Sbjct: 119  LNSRASIEGHYIKWPRMDQEIIAE-HADGLMATTGCPSGIVQTRLRLGQYDAALQAAATY 177

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +++FG +  +  +  H    +R     +V +A   ++  V TN+S +  E + +AH  L+
Sbjct: 178  QEIFGKENFFCEIMDHGLDIERRVRDGLVDIARALDMRFVVTNDSHYTYEHERDAHAALL 237

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             V  ++ V+          ++LK+  EM  I  D  +  +   E     +  +       
Sbjct: 238  CVQTASTVANPSFQFEGSGYFLKSAEEMYGI--DSSDIWQEGCETTLLIAERVDPTGMFA 295

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
               +         + EE+  R +  AG++ R  QG         ++R+R+++E+ VI +M
Sbjct: 296  KHNLMPRFPVPDGETEESWFRAETWAGMDRRFPQGFD------DEHRERVEYEIRVILQM 349

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFL+VADFI WAK   IPVGPGRGS AGS+ A+AL ITD+DP+  SLLFERFLNP+
Sbjct: 350  GFPSYFLVVADFIMWAKAQGIPVGPGRGSAAGSMVAFALGITDLDPIPHSLLFERFLNPE 409

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR +VIRYV  ++G +R+AQI+TFG+++AKAA++D  R L  PY+ 
Sbjct: 410  RVSMPDIDIDFDERRRGDVIRYVTERWGDDRIAQIVTFGTIKAKAAIKDSSRVLGYPYAV 469

Query: 472  VDRLCKLIPN-DPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DR+ K +P       +             ++    R    +D  V +++E ++ LEGL 
Sbjct: 470  GDRITKAMPPAVMGKDIPLGGIFDPKHPRFSEAGEIRGLYESDADVKKVIETAKGLEGLI 529

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R A  HAAG+++   P+   +P++R       +TQF+    E  GL+K DFLGL+ LT++
Sbjct: 530  RQAGVHAAGVIMSAEPIIDHIPVWRRDADGAIITQFDYPTCETLGLLKMDFLGLRNLTVM 589

Query: 583  QKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++    A RG+ +DL  +  DD   Y LL    TLG+FQL+   MR  L  M+PD  E
Sbjct: 590  DDAVRNVEANRGITIDLLGLTLDDPAAYELLGRGDTLGVFQLDGGPMRSLLRMMRPDNFE 649

Query: 642  DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQEQV 695
            DI A+++LYRPGP+  ++ + Y  RKNG+++I  IHP +      +L  T G+I+YQEQV
Sbjct: 650  DISAVLALYRPGPMGANSHINYALRKNGQQEITPIHPELSEALADILDTTYGLIVYQEQV 709

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M IAQ ++GYSL  AD+LRRAMGKK KE +DK+   F  G   +G S+     ++++L  
Sbjct: 710  MAIAQKVAGYSLGGADLLRRAMGKKKKEILDKEFVPFSEGMKNSGYSEAAIKTLWDILVP 769

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            F+DY FNK+H A Y ++SY TA++K +YP E++AA +T   D+ +K   +  + R+  I+
Sbjct: 770  FSDYAFNKAHTAGYGLVSYWTAYLKANYPAEYMAALLTSVRDDKDKSAIYLNECRRMGIR 829

Query: 816  IMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873
            ++PP VN+   D+       I   LAAI+ VGT     I+     K  F S  DF  +VD
Sbjct: 830  VLPPDVNSSNADYTAHGAAEIRVGLAAIRNVGTNVVESIVRTRKSKSRFVSFPDFLDKVD 889

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +   N+R +ESL+ AGA D  G++R  L++  +        V+K       ++FA +   
Sbjct: 890  AVVCNKRTIESLIKAGAFDALGHTRRGLVERHEQAVDAVMGVKKKNAEGQFDLFALDADD 949

Query: 934  FSDKITLEKF-----SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987
                  +           + +V+  +E+ +LG Y S HPL   + IL             
Sbjct: 950  DPGAAPVFGVQEFSDQEWDKAVKLSHEREMLGLYVSDHPLREVEHILTARADCSIAALTG 1009

Query: 988  -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G+ + +A ++ S Q+K T++G      T  + A   E  FFP
Sbjct: 1010 GEYADGSTVTIAGIISSLQRKVTKQGKLWALTTVEDLAGGLEVMFFP 1056


>gi|300771841|ref|ZP_07081712.1| DNA-directed DNA polymerase III alpha subunit [Sphingobacterium
            spiritivorum ATCC 33861]
 gi|300761227|gb|EFK58052.1| DNA-directed DNA polymerase III alpha subunit [Sphingobacterium
            spiritivorum ATCC 33861]
          Length = 1474

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/1099 (30%), Positives = 532/1099 (48%), Gaps = 92/1099 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----------- 59
            F HL  HS +S+L+  +S+  ++D    ++ PA+A+TD  N+  A  F            
Sbjct: 259  FAHLHNHSQFSVLQSTISIGGLVDAAVKNKMPAVALTDHGNMMGAFHFVSRVLGHNKDAE 318

Query: 60   ---QKACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
               Q+    G       ++PI+GC+  I         +  K+       +V L     GY
Sbjct: 319  TKNQELIDNGEAPTETIVKPIVGCEFFICED------HLDKSRKDNGYQVVFLAKNKNGY 372

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L ++ S  Y         RI    +++   E +I+L+G   G I           AE+
Sbjct: 373  HNLAKMSSVAYTKG-FYYVPRIDKKVVEQY-KEDIIVLSGNLQGEIPNKILNIGENQAEE 430

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             L+ +K+ FG+  Y+ + RH   D  R    +V LA  H + ++ TNN+ ++++ D  AH
Sbjct: 431  ALIWWKEQFGEDFYIEVMRHGQEDENRVNETLVSLARRHGVKVIGTNNTYYVNKADAHAH 490

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            D+L+ V     +S            L N+       S++ +   +  E       I+   
Sbjct: 491  DILLCVKDGEKLSTPKGRGRGFRFGLPNQEYYFKSASEMKKVFADLPEAIVNIQEIIDKV 550

Query: 289  API---------------LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
                                +  E   D  ++ E   L +    G E R A+        
Sbjct: 551  EIFKLNRDVLLPKFEIPEQFQVQEDNEDGGKRGENKYLAHLTYVGAEKRYAE-------I 603

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
              D R+RLDFEL  I +  + GYFLIV DFI  A+   + VGPGRGS AGS  AY L IT
Sbjct: 604  TDDIRERLDFELATIEKTGYPGYFLIVQDFIAEARNMGVSVGPGRGSAAGSAVAYCLGIT 663

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            +IDP+++ LLFERFLNPDR+SMPD DIDF  + R +V++YV +KYG  +VAQIIT+G++ 
Sbjct: 664  NIDPIQYDLLFERFLNPDRVSMPDIDIDFDDEGRGKVMQYVIDKYGASQVAQIITYGTMA 723

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA------------IADDSRFREA 501
            AK++++D  R L +P S  + + KLIPN     +                +    +    
Sbjct: 724  AKSSIKDTARVLDLPLSDANEIAKLIPNLKLSKIFNMDEKALKEALRAEELEAVHKLISL 783

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
                      ++ ++ LEG  R+   HA G++I    ++  VP+     SDL VTQF+  
Sbjct: 784  ADGAGLEAETIKQARVLEGSMRNTGIHACGVIITPDDITNFVPVSLAKDSDLYVTQFDNS 843

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGI 620
             +E AGL+K DFLGLKTLTL++ ++  +  R     D    P DD  TY L     T+G+
Sbjct: 844  VVESAGLLKMDFLGLKTLTLIKDTVANVKLRHNLDLDPDNFPIDDQLTYELFQRGETIGV 903

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
            FQ ES GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RK+G E IV      + 
Sbjct: 904  FQYESPGMQKHMKDLKPTVFADLIAMNALYRPGPMEYIPSFIKRKHGIEPIVYDLDACEE 963

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
             LKET G+ +YQEQVM ++Q L+G+S  +ADVLR+AMGKK K  +DK K +F+S A + G
Sbjct: 964  YLKETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKQKAVLDKMKPKFVSQAVEKG 1023

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             +  +   I+     FA Y FNKSH+  YA ++YQTA++K H+P E++AA ++  M++++
Sbjct: 1024 HNAKVLEKIWTDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHFPAEYMAAVLSNNMNDIK 1083

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD 859
            ++  F ++ R+  ++++ P VN     F V D   I + + A+KGVG      I++    
Sbjct: 1084 QVTFFMEECRRMGLEVLGPDVNESHYKFTVNDRGAIRFGMGAVKGVGAGAVDTIVQTREG 1143

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKY 911
             P+ S+ D   R+D +  N++  ESL +AG  D F    R Q           L+   ++
Sbjct: 1144 NPYKSVFDMAKRIDLRAANKKAFESLAYAGGFDSFKETHRAQYFHVDGDNSTGLEKAVRF 1203

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
             Q  ++N ++   ++F         +  L          + + E+ V+G Y + HPLD Y
Sbjct: 1204 GQRHKENESSAQASLFGGGGSAELPEPVLAPCPQWGLIEKLKYEKDVIGIYLTSHPLDNY 1263

Query: 972  KPILRKMGIKGYEESV------------------ATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            K  ++        E                      I+   + +  ++ +   + ++ G 
Sbjct: 1264 KFEIKHFCQNNVSELQLINKVKASEVEEDVLLEFNKIKNKEVIIGGIIAAANHRVSKNGK 1323

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
              G +   + +  +E   F
Sbjct: 1324 PFGILVIEDYSDSFEMMVF 1342


>gi|302561148|ref|ZP_07313490.1| DNA polymerase III, alpha subunit [Streptomyces griseoflavus Tu4000]
 gi|302478766|gb|EFL41859.1| DNA polymerase III, alpha subunit [Streptomyces griseoflavus Tu4000]
          Length = 1179

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/1067 (31%), Positives = 533/1067 (49%), Gaps = 47/1067 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ D         IA++D  NL  A +F   A  
Sbjct: 1    MSKPP-FTHLHVHTQYSLLDGAARLKDMFDACNEMGMSHIAMSDHGNLHGAYDFFHSAQK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +    + G   L  
Sbjct: 60   AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTMWAVNSTGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EG++  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETIAQW-SEGIVASTGCPSGEVQTRLRLGHFDEALKAAADY 178

Query: 175  KKLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG DR ++ L  H     +R    ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIDIEHRVRDGLLEIGRKLGIPPLVTNDSHYTYAHEAVAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             +     +S  DR +     Y    S       D  +A +      R  + ++       
Sbjct: 239  CIQTGKNLSDPDRFKFDGTGYYLK-STDEMYAIDSSDAWQQGCANTRLIAEMVDTTGMFE 297

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             R +  + D      E +  + +   G+E R   G        +D +++ D+E++VI +M
Sbjct: 298  KRDLMPKFDIPQGYTEVSWFKEEVRRGMERRFPGGV------PEDRQKQADYEMDVIIQM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+ 
Sbjct: 412  RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471

Query: 472  VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DRL K +P D     +        S    ++    R     +P V ++++ ++ +EGL 
Sbjct: 472  GDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRAMYENEPDVKKVIDTAKGVEGLV 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ LT++
Sbjct: 532  RQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  +   +GV +DL  +P DD +T+ LL    TLG+FQ +   MR  L  M+PD  E
Sbjct: 592  DDAVKMVKANKGVDLDLLSLPLDDPKTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFE 651

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQV 695
            DI A+ +LYRPGP+       Y  RKN  ++I  IH  ++      L  T G+I+YQEQV
Sbjct: 652  DISAVSALYRPGPMGMDSHTNYALRKNKLQEITPIHKELEEPLREVLDVTYGLIVYQEQV 711

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+++GYSL EAD+LRR MGKK  EE+ K    F +GA KNG S      ++++L  
Sbjct: 712  QKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFTIFQAGARKNGYSDEAIQALWDVLVP 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H+AAY ++SY TA++K ++P E++A  +T   D+ +K   +  + R+  I+
Sbjct: 772  FAGYAFNKAHSAAYGLVSYWTAYLKANHPAEYMAGLLTSVKDDKDKSAVYLNECRRMGIK 831

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVD 873
            ++PP+VN    +F   GD+ I + L+A++ VGT     I++   A   + S  D+  +VD
Sbjct: 832  VLPPNVNESMSNFAAQGDDVILFGLSAVRNVGTNVVESIIKCRRAKGKYTSFPDYLDKVD 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F      
Sbjct: 892  AVVCNKRTTESLIKAGAFDEMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGMGEA 951

Query: 934  FSDKITLE-----KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987
             S +              + +     E+ +LG Y S HPL   + +L      G  +   
Sbjct: 952  ESSEPGFGLDVTFTDDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGISQLTG 1011

Query: 988  -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1012 GDFGDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSLECMFFP 1058


>gi|332169580|gb|AEE18835.1| DNA polymerase III, alpha subunit [Krokinobacter diaphorus 4H-3-7-5]
          Length = 1463

 Score =  718 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1085 (32%), Positives = 558/1085 (51%), Gaps = 77/1085 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            F HL  HS +S+L+   S+ +I+   A  + PA+A+TD  N+  A  F++   +      
Sbjct: 262  FAHLHNHSQFSILQSTASVQDIVKAAALHKMPAVAMTDMGNMMGAFHFTKAVKSHNAFAK 321

Query: 67   -----------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
                             ++ IIGC+ ++ +       ++ K+       IV+L     GY
Sbjct: 322  AENAKLTEAGEAEEHVPLKAIIGCEFNVCVD------HKNKSQKDNGYQIVILAKNKNGY 375

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
            Q L ++ S  Y  D      RI    +++   E LI+LTG   G +         + AE+
Sbjct: 376  QNLCKMASIAYT-DGFYYVPRIDKQVIEQY-KEDLIVLTGNLYGEVPSKILNVGEKQAEE 433

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             L+ +K+ FGD LYV + RH   D  R    ++ L+  H++ L+A+NN+ ++ + D +AH
Sbjct: 434  ALIWWKEQFGDDLYVEIMRHGQEDEDRVMPVLITLSRKHDVKLIASNNTFYIDKSDADAH 493

Query: 229  DVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            DVL+ V     V+                ++Y K+  EM ++F+D+PEA+ N  E+  + 
Sbjct: 494  DVLLCVKDGEKVATPKGRGRGYRFGLPNDEYYFKSADEMKTLFADVPEAILNVQEVVNKI 553

Query: 282  SFILQVHAPILPRFIEKE--------CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
                     +LP F   E         D  ++ E   L++    G + R  +        
Sbjct: 554  ESYELARDVLLPAFDIPEEFVSPEDAIDGGKQGENAFLKHLVYEGAKKRYGE------EL 607

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
            +++  +RLDFEL+VI +  + GYFLIV DFI+ A+  ++ VGPGRGS AGSV AY L IT
Sbjct: 608  SEEVIERLDFELDVIEKTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSVAAYCLWIT 667

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            +IDPL++ LLFERFLNPDR+SMPD DIDF  + R  V++YV +KYG  +VAQIIT+G++ 
Sbjct: 668  NIDPLKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMQYVIDKYGANQVAQIITYGTMA 727

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIP-------------NDPAHPVSLQAIADDSRFRE 500
            AK+++RD  RAL +     DR+ KLIP              +         +        
Sbjct: 728  AKSSIRDTSRALDLSLGDADRIAKLIPTMSKLRKIFGKTDAELRSAFRSDDLPKVQELIT 787

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
               AD    ++L  +++LEG  R+   HA G++I    ++  VP+     SDL VTQF+ 
Sbjct: 788  LEQADNLEGQMLRQARQLEGSVRNTGIHACGVIITPSDITNFVPVALAKDSDLYVTQFDN 847

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLG 619
              +E+AGL+K DFLGLKTLTL++ ++  +  R     D    P DD +TY L     T+G
Sbjct: 848  SVVEEAGLLKMDFLGLKTLTLIKDTVKLVKYRHDVDLDPESFPLDDEKTYELFQRGDTVG 907

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            IFQ ES GM++ ++ ++P   ED+IA+ +LYRPGP++ I  +  RK+G+E+I    P ++
Sbjct: 908  IFQYESPGMQKHMQSLKPTVFEDLIAMNALYRPGPMEYIPSFVRRKHGEEEIEYDLPAME 967

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
              LKET G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK    +DK K +FI  AS  
Sbjct: 968  EYLKETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFIEQASAK 1027

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G        I++    FA Y FNKSH+  YA I+YQTA++K HYP E+LAA ++  M+++
Sbjct: 1028 GHDPEKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYLKAHYPAEYLAAVLSNNMNDI 1087

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASA 858
            +++  F ++A++  ++++ P VN     F V DN  + + + A+KGVGT     I+E   
Sbjct: 1088 KQVTFFMEEAKRMGLEVLGPDVNESFRKFTVNDNGAVRFGMGAVKGVGTGAVATIVENRK 1147

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS--RMQLLQS-------LDNIQ 909
            D  + S+ DF  RVD +  N++  ESL  AG  D    +  R Q           L+   
Sbjct: 1148 DGNYKSVFDFARRVDLRAANKKAFESLALAGGFDELDRNTHRAQFFNHDGDGITFLEKAV 1207

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            KY    ++N  +   ++F         +  +       +  + + E+ V+G Y SGHPLD
Sbjct: 1208 KYGARYQENENSSQVSLFGESSEVQIPEPEVPPCEEWGTMEKLKREKEVVGVYISGHPLD 1267

Query: 970  VYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             +K  +                     +    ++   Q + ++ G      T  +    +
Sbjct: 1268 DFKTEMETFCNATVAHFSQMESFINRELTFGGVISDVQHRVSKNGKGWAAFTVEDFTDTF 1327

Query: 1028 EANFF 1032
            E   F
Sbjct: 1328 EFRMF 1332


>gi|187250629|ref|YP_001875111.1| DNA polymerase III subunit alpha [Elusimicrobium minutum Pei191]
 gi|186970789|gb|ACC97774.1| DNA polymerase III, alpha subunit [Elusimicrobium minutum Pei191]
          Length = 1167

 Score =  718 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1051 (35%), Positives = 604/1051 (57%), Gaps = 48/1051 (4%)

Query: 11   FVHLQVHSSYSLLEGALS-----LNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            FVHL  HS YSLL+G L       +  L ++AAD   A+AITD  N++ A++F + A AA
Sbjct: 3    FVHLHNHSEYSLLDGMLRLSEKGPSKFLKQVAADGFKAMAITDHGNMYGAMDFYKNAAAA 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PIIGC+  I    +       +        + LL    EGYQ L+ L+S+ +L D  
Sbjct: 63   GIKPIIGCEAYITNGSHKNK----EKGLDKTFHLTLLAKDYEGYQNLMALISKAWL-DGF 117

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184
                RI    L +   +G++ L+G   G + +     +   A +   T++ + G    Y+
Sbjct: 118  YYHPRIDKDILAQ-HAKGIMALSGCLKGEVSQELLNGTFAQACEYAKTYESILGKGNYYI 176

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L  H   +      ++++++ +  +P+VATN+  +  +ED++AHD+ M ++    +   
Sbjct: 177  ELMDHGIEEEQIILPKLIEVSKSTGIPVVATNDCHYEKQEDWQAHDIHMCISMGKTLDDP 236

Query: 244  DRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +R + +    Y K+  EM  +FS +PEA+ NT+E+A +C+ ++     +LP F       
Sbjct: 237  NRLKSSTHELYFKSAQEMAELFSYIPEAVSNTLEVAEKCNVVMPKSGFVLPVFDIP---P 293

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
               + ++ ++N    GL  +++      G    +Y++RLD+EL VI +M FS YFLIVAD
Sbjct: 294  SFSDTDSYIKNLCQEGLAKKMS------GIIPPNYQERLDYELGVIGKMGFSSYFLIVAD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI +A++N+IPVGPGRGSGAGS+ AY+L IT +DP++  LLFERFLNPDR+SMPD DIDF
Sbjct: 348  FIDYARQNHIPVGPGRGSGAGSIVAYSLNITKVDPIKNGLLFERFLNPDRLSMPDLDIDF 407

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              + R++VI YV+NKYG   VAQIITFG+++AK A++DV R L +P S+ +R+ KLIPND
Sbjct: 408  SDEGREQVINYVRNKYGETNVAQIITFGTMKAKMAVKDVARVLNIPVSESNRITKLIPND 467

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +   AI      ++   ++P   +L + ++KLEGL RHA  HAAGIV+    +S+ 
Sbjct: 468  LGTTID-SAIETVKELKQEIASNPQTAKLFDFAKKLEGLKRHAGIHAAGIVVTREEVSKY 526

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
             P+ R  +  +          +  GL+K DFLGL+TLT++  ++D +   RG+ +D+  I
Sbjct: 527  APLARGSKEAITTQYEGGILADDLGLLKIDFLGLRTLTIIDNAVDIIKNMRGIDIDIDNI 586

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
            P D+ +TY LL++  TLGIFQLES GMR  ++ ++P    DI ALV+LYRPGP+++ ++ 
Sbjct: 587  PLDNKKTYELLSSAKTLGIFQLESGGMRDLVKRLKPSEFSDISALVALYRPGPMESGMLE 646

Query: 661  -YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RK G+EKI    PL++P+LKET G ++YQEQ+M++++LL G++  +AD LR+AMGK
Sbjct: 647  SFVRRKAGQEKITYDTPLMEPVLKETYGTMVYQEQIMELSKLLGGFTPGQADSLRKAMGK 706

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K  +EM+K +  F++G +   I+   A  IFE ++KFA YGFNKSH+ AYA++SYQTA++
Sbjct: 707  KKVDEMEKARVNFVNGCAGKKINPKTADKIFEQMSKFAGYGFNKSHSVAYALVSYQTAYL 766

Query: 780  KTHYPVEFLAASMTLEMDN--------VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            K +YP+EF+ + +T E+ +          KI  + ++A++   + + P VN    +F + 
Sbjct: 767  KANYPIEFMCSLLTNEIGHNAIGSDDKENKIVTYIEEAKKMGFETLGPDVNHSKENFSIE 826

Query: 832  D----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            +      I + L A+K VGT  A  I+ A  D+P+   +D   R+D K  N++ +ESL+ 
Sbjct: 827  EVNGKEIIRFGLEAVKNVGTEAAASIVSARGDRPYCGFQDLLERIDLKASNKKTIESLIK 886

Query: 888  AGALDCF------GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF---SDKI 938
            AGALD          +R  +L  ++++ +    +++ + +   ++F  +   F     K 
Sbjct: 887  AGALDSLIPGKTPNSARAVMLAEMEDMLEITAKIKEEKESSICSLFGEDSSAFVSVKKKE 946

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
            T             E E+ VLGFY SGHPL  YK  + K+     EE         + + 
Sbjct: 947  TKTAPRPLKQEQLLEMEKEVLGFYNSGHPLAKYKKHMDKIKSVTIEEINENNIKGAVNIL 1006

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
             ++   ++++ ++          +   +  A
Sbjct: 1007 GIITRVKKRQNKRKEDWAQFIIEDETGQMSA 1037


>gi|323344416|ref|ZP_08084641.1| DNA-directed DNA polymerase III alpha subunit [Prevotella oralis ATCC
            33269]
 gi|323094543|gb|EFZ37119.1| DNA-directed DNA polymerase III alpha subunit [Prevotella oralis ATCC
            33269]
          Length = 1235

 Score =  718 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1110 (33%), Positives = 549/1110 (49%), Gaps = 91/1110 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62
             +VHL VH+ YS+L+G   ++ ++DK  AD    +A+TD   +F   EFS          
Sbjct: 3    DYVHLHVHTYYSILDGQSKISYLVDKAIADGMRGMALTDHGAMFGIKEFSDYCEGVNKKR 62

Query: 63   CAAG---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
             A G    +PI GC++ +  +          +   +   +++L     GY+ LI+LVSR 
Sbjct: 63   KAEGKEPFKPIFGCEMYVARRHKEDKEK--DSGDKSGYHLIVLAKNYNGYKNLIKLVSRS 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            + +D      R     L+    E LI+ +   +G +         + A K L  +K++FG
Sbjct: 121  W-VDGYYYRPRTDHDDLERYH-EDLIVCSACIAGEVPSKILKGDIEGARKSLEWYKRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            +  Y+ LQRH   D                   +++ A  + + L+ TN+  F  +E  E
Sbjct: 179  EDFYLELQRHEVKDPSLIANRTTYPLQEKVNKILIEFAKEYGIKLICTNDVHFEDKETAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++    +   +R R T   + K R+EM  +F D+PE L NT+EI  +      
Sbjct: 239  AHDHLLCISTQADLDDPNRMRYTKQEWFKTRAEMNEVFYDMPEVLSNTLEILDKVEIYSI 298

Query: 287  VHAPILPRFIEK--------------------------ECDDIQKEEENELRNKAVAGLE 320
             H PI+P F                               +++   EE ELR + + G +
Sbjct: 299  GHDPIMPFFPIPEDFGTEELWRQKFTKEDLYKEFCSDENGENMMSPEEGELRIRHLGGYD 358

Query: 321  VRLAQGAIAK---------------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    A                    Q+  +R+ FEL+V+  M F GYFLIV DFI 
Sbjct: 359  KIYRIKFEADYLAKLAYDGAKKVYGSPMPQEVIERVKFELHVMKTMGFPGYFLIVQDFIN 418

Query: 366  WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             A+    + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+S+PD D DF  
Sbjct: 419  AARNELEVMVGPGRGSAAGSVVAYCLGITQIDPLKYDLLFERFLNPDRISLPDIDTDFDD 478

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D R  V+++V +KYGHE  A IIT+ S+  K +++DV R  ++P  + + LCK IP+   
Sbjct: 479  DGRGRVLQWVMDKYGHENCAHIITYSSMATKNSIKDVARVEKLPLEKSNALCKAIPDRLP 538

Query: 485  HPVSLQ---AIADDSRFREARL-ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              + +    AI      +EA    DP     ++ ++ LEG  R    HA G +I   P+S
Sbjct: 539  DGMKMNLTNAIYCTPELKEAEASTDPRERNTIKYAKMLEGTVRGTGIHACGFIICRDPIS 598

Query: 541  QLVPMYRDVRSDL-----PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594
              VP+      D      PVTQ++   IE  GLIK DFLGLKTL+ L++++  +    G+
Sbjct: 599  NWVPVSTADDPDFKDKKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEAVKDVKISLGI 658

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VDL  IP DD  TY L     T+G FQ ES GM++ L  + P   ED+IA+ +LYRPGP
Sbjct: 659  EVDLDHIPLDDELTYKLYQEGRTIGTFQFESPGMQKHLRELHPTVFEDLIAMNALYRPGP 718

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +  RK+    +    P ++  LK+T G+ +YQEQVM +++ L+G++  E+D LR
Sbjct: 719  MDYIPDFIRRKHDSSLVQYDIPCMEKYLKDTYGITVYQEQVMLLSRQLAGFTRGESDALR 778

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +AMGKK K  +D  K +FI G  K G    +   I+    KFA Y FNKSHA  Y+ ++Y
Sbjct: 779  KAMGKKKKAIVDAMKPKFIEGGKKKGHDPKVLEKIWTDWEKFASYAFNKSHATCYSWVAY 838

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833
            QTA+MK HYP E++AA MT    ++++I K   + +  NI  + P VN   ++F V    
Sbjct: 839  QTAYMKAHYPAEYMAAIMTRRRSDIKEITKLMDECKSMNIATLGPDVNESYLEFGVNKKG 898

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I + LAAIKG+G   A  I++    +  +  + DF  RVD   +NR+  ESL  +G  D
Sbjct: 899  EIRFGLAAIKGMGDAAAEAIIKEREKNGIYKDIFDFAQRVDFSYVNRKAFESLAVSGGFD 958

Query: 893  CFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
             FG  R Q L         LD + +Y Q  +  +T    ++F            + +   
Sbjct: 959  DFGLRREQYLGVNTKGDMFLDTLVRYGQMYQAGQTEAQNSLFGDADAIEIATPPIPQGEE 1018

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIRLAAMVV 1002
             ++  R   E+ ++G Y S HPLD +  IL  M      E        + N I +  +V 
Sbjct: 1019 WSTIERLNRERELVGIYLSAHPLDDFSIILNSMCNTHCSELDNKAELAKKNEITIGGIVT 1078

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + K T+ G   G+VT  +     E  FF
Sbjct: 1079 GVKSKFTKTGKPCGFVTIEDYEGSGELAFF 1108


>gi|29832685|ref|NP_827319.1| DNA polymerase III subunit alpha [Streptomyces avermitilis MA-4680]
 gi|29609805|dbj|BAC73854.1| putative DNA polymerase III alpha subunit [Streptomyces avermitilis
            MA-4680]
          Length = 1179

 Score =  718 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/1067 (31%), Positives = 531/1067 (49%), Gaps = 47/1067 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ +         IA++D  NL  A +F   A  
Sbjct: 1    MSKPP-FTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHTAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +  +   G   L +
Sbjct: 60   AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANRTGLHNLFK 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EGLI  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGELQTRLRLGQFDEALKSAAEY 178

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +++FG DR ++ L  H    +R     ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QEIFGKDRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYANEATAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             +     +S  DR R     Y    S       D  +A +         +  +       
Sbjct: 239  CIQTGKNLSDPDRFRFDGTGYYLK-STDEMYAIDSSDAWQEGCANTLLVAEQIDTSGMFE 297

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             + +  + D      E    + +   G+E R   G         D +++ ++E++VI +M
Sbjct: 298  AKNLMPKFDIPEGFTEVTWFQEEVRRGMERRFPGGV------PDDRQKQAEYEMDVIIQM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAKK  I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIMWAKKQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+ 
Sbjct: 412  RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471

Query: 472  VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DRL K +P D     +        S    ++    R     +P V ++++ ++ +EGL 
Sbjct: 472  GDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRAMYENEPDVKKVIDTAKGVEGLV 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ LT++
Sbjct: 532  RQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  +   +G+ +DL  +P DD +T+ LL    TLG+FQ +   MR  L  M+PD  E
Sbjct: 592  DDAVKMVKSNKGIDLDLLSLPLDDPKTFELLQRGETLGVFQFDGGPMRSLLRLMKPDNFE 651

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695
            DI A+ +LYRPGP+       Y  RKNG ++I  IH  ++  L+E    T G+I+YQEQV
Sbjct: 652  DISAVSALYRPGPMGMDSHTNYALRKNGLQEITPIHKELEEPLQEVLAVTYGLIVYQEQV 711

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+++GYSL EAD+LRR MGKK  +E+ K    F  GA K G S      ++++L  
Sbjct: 712  QKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFVLFQEGAQKKGYSDEAIQALWDVLVP 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H+AAY ++SY TA++K +YP E++A  +T   D+ +K   +  + R+  I+
Sbjct: 772  FAGYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAGLLTSVKDDKDKSAVYLNECRRMGIK 831

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            ++PP VN    +F   GD+ I + L+A++ VGT     I+++      + S  D+  +V+
Sbjct: 832  VLPPDVNESMSNFAAQGDDVILFGLSAVRNVGTNVVESIIKSRKAKGKYASFPDYLDKVE 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F      
Sbjct: 892  AVACNKRTTESLIKAGAFDTMGHTRKGLTAQFEPMIDNVVQVKRKEAEGQFDLFGGMGEE 951

Query: 934  FSDKITLE-----KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987
             SD+                +     E+ +LG Y S HPL   + +L      G  +   
Sbjct: 952  ESDEPGFGLDVVFTDDEWEKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIAQLTG 1011

Query: 988  -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1012 GEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSLECMFFP 1058


>gi|294790529|ref|ZP_06755687.1| DNA polymerase III, alpha subunit [Scardovia inopinata F0304]
 gi|294458426|gb|EFG26779.1| DNA polymerase III, alpha subunit [Scardovia inopinata F0304]
          Length = 1187

 Score =  718 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/1074 (31%), Positives = 545/1074 (50%), Gaps = 56/1074 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S  FVHL  H+ YS L+GA+ +  ++  +    Q A+ ITD  N+  A E  + A  
Sbjct: 1    MTSSSDFVHLHNHTDYSTLDGAVPVKKLVQVVKDQGQKAVGITDHGNMHGAYELWRTAVD 60

Query: 65   AGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
             GI+PIIG +  I                 +      +   +   + L     +G   L+
Sbjct: 61   QGIKPIIGIEAYITPGTARGDKTRVHWGTKEQHADDVSANGSYTHMTLWAQNDQGLVNLL 120

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +  S   L     ++ R+    L     +G+I  TG  SG +         + A +    
Sbjct: 121  KASSVANLEGLMGRNPRMDRDVLNTYH-QGIIATTGCPSGAVQTRLRLGQYEQALREARE 179

Query: 174  FKKLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
             + ++G +  YV +  H    ++   + ++++A     PLVATN+S +  EED +A D L
Sbjct: 180  LQDIYGKENFYVEIMDHGLTIEKRVINDLIRIADNIGAPLVATNDSHYGLEEDAKAQDAL 239

Query: 232  MAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + +   + ++  +R       +Y+K+  +M  +F D P+A +NT+EIA RC+ +   H  
Sbjct: 240  LCINSGSRLTDPNRFHFDGSGYYIKSAQQMRELFKDFPQACDNTLEIAERCNVMFDDHED 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                F+ +       +  +   +    GLE R   G  A+        ++ D+E  VI +
Sbjct: 300  GA--FMPEFDCPQGWDATSLFLHDVEQGLERRYPDGVPAQ------VARQADYECGVICQ 351

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M+F GYFL+VAD+I WAK + + VGPGRGS AGS+ +YA+ IT++DPL+  L+FERFLNP
Sbjct: 352  MQFCGYFLVVADYINWAKTHGVMVGPGRGSAAGSMVSYAMGITELDPLKHGLIFERFLNP 411

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+S+PD D+DF    R++V++YV +KYG ++VAQ +T+G+++ K AL+D  R L   + 
Sbjct: 412  ERVSLPDIDVDFDPAGREKVLQYVTHKYGADKVAQCVTYGTIKTKQALKDSARILDYEFQ 471

Query: 471  QVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLEISQKLEGL 521
              + + K +P                     A+   FR+    +P V ++ E ++ +EGL
Sbjct: 472  MGETITKALPGSVGGKDISLHDIFDPHAKRYAEAQEFRDLYNDNPDVQKITEEAKGIEGL 531

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R    HA   ++  +P++   P+ +        T F     E  GL+K DFLGL  LT+
Sbjct: 532  IRQTGVHACATIMASQPIANTSPLLKR-TDGTITTTFEYHTCETLGLVKMDFLGLANLTV 590

Query: 582  LQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            ++++L+ +       VDL  IP DD  TY LL++  TLG+FQL+S GM+  L+ ++PD  
Sbjct: 591  IKETLNNIKANGKPAVDLEKIPIDDKPTYDLLSSGHTLGVFQLDSDGMQSLLKQLKPDNF 650

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQ 694
             DI AL++LYRPGP+  D+   Y  RKNG ++I  IHP ++      L ET G+I+YQEQ
Sbjct: 651  NDISALIALYRPGPMDVDSHNNYAKRKNGLQEIKPIHPELEKPLASVLDETYGLIVYQEQ 710

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            V   A++L+GYSL  ADVLRRAMGKK  E + K+K  F  G  ++G S+  A  ++++L 
Sbjct: 711  VQSAARILAGYSLGRADVLRRAMGKKKPEVLAKEKVPFFEGMKEHGYSQEAAQAVWDVLV 770

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y FNK+H+AAY +ISY TA++KTHYPVEF+AA +  E  N +K   +  + R+ NI
Sbjct: 771  PFAGYAFNKAHSAAYGLISYWTAYLKTHYPVEFMAALLQGERTNKDKTALYLGECRRMNI 830

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA----DKPFDSLEDFCS 870
            Q++PP VN     +    N I + L A++ VG      I+           F S  D+ +
Sbjct: 831  QVLPPDVNESVSHYSAVGNDIRFGLGAVRNVGDKIVDAIVHEREKSGGKGKFLSFLDWIN 890

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            R+    LN+R +ESL+  GA D    +R  L    +        +++       ++FA  
Sbjct: 891  RMPVSVLNKRTVESLIKGGAFDSIDPNRRALFTIHEAAIDQVVPLKRKEAEGQFDLFADA 950

Query: 931  KGTF--------SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
                           I++ +    +   +   E+ +LG Y S HPL     +L  +    
Sbjct: 951  GDPSSSSADALGDANISVPQIDEWDKKTKLNFEREMLGLYVSDHPLSGLASVLANLSDMS 1010

Query: 983  YEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + +         N + +AA++ +  ++ +++G     VT  +     +  FF
Sbjct: 1011 IPQLLNKASTMPDRNQVTIAALITAVDRRVSKQGKPWAIVTLEDLEGSIQCLFF 1064


>gi|296125094|ref|YP_003632346.1| DNA polymerase III, alpha subunit [Brachyspira murdochii DSM 12563]
 gi|296016910|gb|ADG70147.1| DNA polymerase III, alpha subunit [Brachyspira murdochii DSM 12563]
          Length = 1240

 Score =  718 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1036 (35%), Positives = 583/1036 (56%), Gaps = 34/1036 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNI--------------LDKIAADQQPAIAITDTNNLFSA 55
            SFVHL VH+ YS+L+GA  + ++              +D+    + PAIAITD  N+F  
Sbjct: 2    SFVHLHVHTQYSILDGASRIKSLYSKKDKKKRLIPGLIDRAVELEMPAIAITDHGNMFGV 61

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            +EF  +A   GI P+IGC+L +  +       +  +   +   ++LL    EGY  L +L
Sbjct: 62   MEFFSEAKDKGIIPVIGCELYVAPKTRFDKKIEN-SEEKSAMHLILLAKDKEGYDNLCKL 120

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            V+  Y  +      R+    +++   +GLI L+    G I  A      + A K    +K
Sbjct: 121  VTFGYT-EGFYYRPRVDHELIEKY-NKGLICLSACMGGEIPIAIRKKDYKQASKLAEYYK 178

Query: 176  KLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
             +FG+  Y+ LQ H   +     S + +LA  H + +V TN+  ++ +ED +AH++L+A+
Sbjct: 179  SIFGNDFYIELQDHNIPEEKSLNSALYKLANHHSIEMVVTNDVHYVLKEDAKAHEILLAI 238

Query: 235  AHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
                 +    R +  + + +LK++ EM+  F+ LP+A ENTV+IA +C     ++     
Sbjct: 239  QTKATLDSPRRYKFPSNEFHLKSKEEMMKSFAKLPKAFENTVKIAEQCR---DLNIMTKT 295

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             ++        + E   LRN  + GL               ++  +RL+ EL VI++M F
Sbjct: 296  YYMPNYELPNGETETTALRNMCMEGLNKHYNNN------IPKEAMERLEMELGVISKMGF 349

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFL+V DFI +A+ +++ VGPGRGS AGS+ A+A  IT ++PL ++LLFERFLNP+R 
Sbjct: 350  EGYFLVVQDFINYARNHDVAVGPGRGSAAGSIVAFATGITKVNPLDYNLLFERFLNPERK 409

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPD D+DF  D+R+ +I YV+ KYG + VAQI TFG+L  ++ +RDV R + +  +  D
Sbjct: 410  SMPDIDVDFQDDKREVIIDYVKEKYGKDNVAQIATFGALGGRSVIRDVCRVMGIDLATAD 469

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            RL K IPND +  V +    D + FR+   +   +  + EIS +L+GL R+   HAAG++
Sbjct: 470  RLAKGIPNDVSRVVDIYDHPDCAEFRKEVESSRELKNMYEISTRLDGLVRNVGLHAAGVI 529

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            I   P+  L P+Y+D ++     Q+ M ++E AGLIK DFLG+K L L++ ++  + +R 
Sbjct: 530  ISSHPIMDLAPVYQDSKTGTRACQYEMTYVESAGLIKMDFLGIKNLRLIKDAVKDIKERY 589

Query: 594  -VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
              ++D+  IP DD   Y +     T G+FQ ES GMRQ L  +QP   +D+++ V+LYRP
Sbjct: 590  GTEIDIDKIPLDDEAVYDIFRKADTGGVFQFESPGMRQMLINIQPTGFDDLVSSVALYRP 649

Query: 653  GPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GP+++ +   Y +RKN +++IV  HP ++P+LKE+QGV+IYQEQ+M I++++ G++ +EA
Sbjct: 650  GPLNSGMDKDYADRKNKRKEIVYKHPDLEPILKESQGVLIYQEQIMAISRVIGGFTAAEA 709

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D LR+AMGKKI E+M+  +E+FI+G  + G  K +   +F+ +  FA+YGFNKSH+  YA
Sbjct: 710  DDLRKAMGKKIVEKMNSMEEKFINGGLERGYDKELLTYLFDTMKGFAEYGFNKSHSVCYA 769

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +I+YQ A++K HYP+E+  A +   + + +KI  +  + +Q NI I+  SV      F  
Sbjct: 770  LIAYQEAYIKAHYPMEYYVALLNTVIADTDKISLYLNEVKQKNIDIVTASVFESNALFSQ 829

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             + +I Y+L A+KGVG   A  I E    +  F +LEDF  RVD   +NR+V E+L+  G
Sbjct: 830  KNGKIVYALHAVKGVGLHAALAIEEEREKNGQFKNLEDFVKRVDVHLVNRKVYETLIKCG 889

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVEN 947
            A   FG++   LL SLD I  +A   +K   +    +F    E  + S  + +EK     
Sbjct: 890  AFSEFGHTESALLASLDAILAHASNYQKETLSGQTMLFDSMSEDDSGSASLVIEKQVEYA 949

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            S++  ENE+ VLGF    HP   Y   +         +       +   L  +V+S  + 
Sbjct: 950  SNILMENEKEVLGFSLRYHPFARYISKIDYKYFNNTLDIDNLKDKDEFSLPCVVMSVTES 1009

Query: 1008 KTRKGSRIGWVTFSEP 1023
             T+K + +  +   + 
Sbjct: 1010 TTKKNTPMLTLKVIDL 1025


>gi|219682166|ref|YP_002468550.1| DNA polymerase III alpha chain [Buchnera aphidicola str. Tuc7
            (Acyrthosiphon pisum)]
 gi|219621899|gb|ACL30055.1| DNA polymerase III alpha chain [Buchnera aphidicola str. Tuc7
            (Acyrthosiphon pisum)]
 gi|311085980|gb|ADP66062.1| DNA polymerase III alpha chain [Buchnera aphidicola str. LL01
            (Acyrthosiphon pisum)]
 gi|311086554|gb|ADP66635.1| DNA polymerase III alpha chain [Buchnera aphidicola str. TLW03
            (Acyrthosiphon pisum)]
          Length = 1161

 Score =  718 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1049 (39%), Positives = 614/1049 (58%), Gaps = 41/1049 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL VHS YS+++G     +++ K A+   PAIAITD NNL+  ++F   A   G
Sbjct: 2    NEPKFIHLHVHSDYSMIDGLSKPEDLVKKAASLNMPAIAITDYNNLYGVIKFYNMAHKLG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG  ++                   +  + LL ST EGY+ LI L+SR Y      
Sbjct: 62   LKPIIGITVNF----------FSDLINNQLTKLTLLASTQEGYKNLILLISRAYQKGYVH 111

Query: 127  QS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
             + V I   W  EI  +GLI+L+GG  G + +      S +    L  ++K F D  Y+ 
Sbjct: 112  NNHVTIEKKWFSEI-NKGLILLSGGPQGELGKVLLNGQSSLISICLSFYQKYFPDSYYLE 170

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQK 243
            L R +R  +       V L+ +  +P+VATN+  FLS+ED++ H + +A+     +   K
Sbjct: 171  LFRTNRDNEETYLHLAVDLSLSTGVPIVATNDVCFLSQEDFKIHKIRIAINEGEILQHSK 230

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             +   +   +LK   EM  +FSD+PEAL N+VEIA+RC+  +        ++   +    
Sbjct: 231  IQNNYSNQQFLKTTKEMSDLFSDIPEALINSVEIAKRCNVFI-----HSGKYFLPQFRTG 285

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ---RLDFELNVIARMKFSGYFLIV 360
            +   E  L  +A  G++ RL    +    +   Y Q   RLD EL VI +M F GYFLIV
Sbjct: 286  KISVEKYLIKEAYKGIKKRLNSRYLDIEKYKDIYSQYINRLDMELTVINKMGFPGYFLIV 345

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQWAK NNIPVGPGRGSGAGS+ AYAL IT++DPL F+LLFERFLNP+R+SMPDFDI
Sbjct: 346  MEFIQWAKDNNIPVGPGRGSGAGSLVAYALNITEVDPLSFNLLFERFLNPERISMPDFDI 405

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC ++RD+VI +V   YG   VAQIITFG+L AKA +RDVGR L  PY  +++L KL+P
Sbjct: 406  DFCMEKRDQVIDHVSEIYGKNAVAQIITFGTLTAKAVIRDVGRVLGYPYGFINKLSKLVP 465

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   +  +A + +S        +  V  L++I++KLEG  R+   HA G+VI    ++
Sbjct: 466  LDPGITLK-EAFSKESELFNLYKNNEDVKNLIDIAKKLEGTNRNIGKHAGGVVISPTKIT 524

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-----LAQRGVK 595
               P+Y D + + PVTQF+   IE  GL+KFDFLGL+TLT++  +++         +   
Sbjct: 525  DFCPLYCDEKGNNPVTQFDKNDIEYVGLVKFDFLGLRTLTIISYAVEMINTKLNLNKKRT 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            ++++ IP DD + ++LL    T G+FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+
Sbjct: 585  ININSIPLDDAKCFNLLKNSETTGVFQLESYGMKDLIKRLQPDCFEDMIALVALFRPGPL 644

Query: 656  DNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V       +             H L+ P+L+ T G+I+YQEQVM+IAQ+LSGY+L 
Sbjct: 645  QSGMVDNFINRKHGRENISYPDHKWQHILLKPILESTYGIILYQEQVMEIAQVLSGYTLG 704

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAM KK  ++M +Q+  F  GA  NGI K +++ IF+LL KFA YGFNKSH+ A
Sbjct: 705  SADILRRAMSKKNLKDMSEQRAIFEEGALNNGIDKKLSIKIFDLLEKFAGYGFNKSHSVA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+K+HYP EF+AA+MT ++DN EKI     ++    ++I+PP++N    +F
Sbjct: 765  YALVSYQTLWLKSHYPAEFIAAAMTSDIDNTEKIVILINESLNMGVKIIPPNINLSKYEF 824

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886
             V D   I Y L AIKG+G  + + +++   +   F  L D C R+DS+K+ RRVLE L+
Sbjct: 825  YVNDQGDIVYGLGAIKGIGKNSVQVLIKEREENKFFHDLFDLCMRIDSQKITRRVLEKLI 884

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFS 944
             +G+ DCF  +R  LLQS+D+    ++   + ++ K +++F   +   +   K  L    
Sbjct: 885  MSGSCDCFDKNRNYLLQSIDDAINASKESFRIKSFKQDSLFGIFQNELNQVKKNNLVNL- 943

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILR-KMGIKGYEESVATIRGNNIRLAAMVVS 1003
            V     + +NE +VLGFY +GHP++ YK  L   +      +     R   I +A ++VS
Sbjct: 944  VCPEKNKLQNEYQVLGFYLTGHPINQYKKELECYVNGVKLSQLKFIKRNKKILVAGIIVS 1003

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + K T+  +RI  +   +     E   F
Sbjct: 1004 IKIKITKNKNRIAILVLDDNTSRLEVVIF 1032


>gi|46446023|ref|YP_007388.1| DNA polymerase III subunit alpha [Candidatus Protochlamydia
            amoebophila UWE25]
 gi|46399664|emb|CAF23113.1| putative DNA polymerase III, alpha chain [Candidatus Protochlamydia
            amoebophila UWE25]
          Length = 1252

 Score =  718 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1089 (35%), Positives = 598/1089 (54%), Gaps = 66/1089 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  SP FVHL+ HS YS+L+ + S++++  +   +   +IA+TD  NLF  ++F +    
Sbjct: 1    MISSP-FVHLRTHSQYSILDASASISDLSQRAFQEGMSSIALTDHGNLFGIVDFYKACKE 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              ++ IIGC+L +     L+ T            + LL     GYQ L +L S  Y+ + 
Sbjct: 60   VKVKSIIGCELYVAPGSRLEKTKVYGQR--AAYHLTLLAQNNRGYQNLAKLSSSGYI-EG 116

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 R+    L++  +EGLI L+G     +       + +  +  LL ++++F DR Y+
Sbjct: 117  FYYYPRVDHDLLRK-HSEGLICLSGSLGTLLAHEILQGNVKSIQDHLLWYQEVFKDRFYL 175

Query: 185  NLQRHRG-------------------------YDRYRESQVVQLAYTHELPLVATNNSLF 219
            +LQRH                             +     ++ L+  H +PLVATN+  +
Sbjct: 176  DLQRHEMAAEDIQQDGLYQESWLVQQYQDYFNRQQKVNEALIALSREHHIPLVATNDVHY 235

Query: 220  LSEEDYEAHDVLMAVAHSTV----------------VSQKDRPRVTPDHYLKNRSEMVSI 263
            +  ED+ AH++L+ +                      + K +   + ++Y K+  +M  +
Sbjct: 236  IDREDWRAHEILLNIQSGEPCEIWEKDAYGTPKFRIPNPKRQTYPSHEYYFKSSQQMEQL 295

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEK-------ECDDIQKEEENELRNKAV 316
            F D+PEA+ NT +IA +C   +       P ++         E D+ +KE EN L     
Sbjct: 296  FKDVPEAIINTQKIAEQCLVEIDFKTKHYPVYLPPSLENRPFEKDEQKKEVENYLWKLCE 355

Query: 317  AGLEVRLA-------QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             G+  R         Q            R+RL++E+++I     S Y LIV DFI WAK+
Sbjct: 356  EGISNRYTIERLAKVQEIYPDRNPLDVVRERLNYEMSIIVPKGMSDYLLIVWDFINWAKR 415

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N IP+GPGRGSGAGS+  Y + ITDI+PLRF L FERF+NP+R+S PD D+D C DRR E
Sbjct: 416  NGIPMGPGRGSGAGSIVLYLIGITDIEPLRFHLFFERFINPERISYPDIDVDICMDRRGE 475

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI Y   KYG + VAQIITFG+++AK AL+DVGR L +P S+V+ + KL+P D    +  
Sbjct: 476  VIAYTLQKYGKDNVAQIITFGTMKAKMALKDVGRVLSVPLSKVNEIAKLVPEDLNITLDK 535

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
              +  D   R+    D  V RL+++++KLEG  R+   HAAGI+I   PL+ L+P+    
Sbjct: 536  A-LEKDQDLRQLYENDEEVGRLIDLAKKLEGSIRNTGIHAAGIIISGVPLTNLIPICNSK 594

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
             SD+PVTQF+MK +E  G++K DFLGLKTLT +Q  ++ +    G ++D   +P DD  T
Sbjct: 595  DSDIPVTQFSMKPVEAVGMLKVDFLGLKTLTAIQICVNAVKASTGKEIDWINLPLDDKPT 654

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + LL    TLGIFQLES GM+     +  D  E+IIA+ +LYRPGP+D I  + NRK+G+
Sbjct: 655  FDLLNQGKTLGIFQLESGGMQDLARQLHLDRFEEIIAVGALYRPGPMDMIPSFINRKHGR 714

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E I + HP +  +L ET G+++YQEQVMQIA  L+ +SL E DVLRRAMGKK  ++M KQ
Sbjct: 715  EAIENDHPWMKDILAETYGIMVYQEQVMQIASKLANFSLGEGDVLRRAMGKKDMDQMAKQ 774

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E+F  GA +N I    ++ IF+ + KFA YGFNKSHAAAY  +SY TA++K +YP E++
Sbjct: 775  REKFRLGALENQIDNQTSMLIFDKMEKFAAYGFNKSHAAAYGYLSYVTAYLKANYPGEWM 834

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            A+ MT + D++ K+ KF ++ +  NI ++PP +N     F+     I +++  IKGVG  
Sbjct: 835  ASLMTCDRDDLSKVAKFIRECQSMNIPMLPPDINEAGEIFQATKQGIRFAMTGIKGVGAG 894

Query: 849  TARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
                I++      PF +  +F  R+D+KK+ ++V+ESLV AG+ D  G++R  L+ S+D 
Sbjct: 895  VVEAIVQERQKRGPFKNFYEFFKRIDTKKVGKKVVESLVEAGSFDFTGWARDALVMSIDP 954

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF--SVENSSVRFENEQRVLGFYFSG 965
            + + +   +K +     ++FA      +++        +  +       E+ +LGF+ +G
Sbjct: 955  MYESSSKEQKEQAMGFMSLFAKMDDEMTNQFRKPPEVKNKTSRQDLLRKEKALLGFFLTG 1014

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ-QKKTRKGSRIGWVTFSEPA 1024
            HP+D YK IL+++                 R A +V S Q +  ++   +   +T S+  
Sbjct: 1015 HPMDEYKDILQRLSCVPLRRLDQLNHDAVFRSAFIVESLQIRIASKSQKKFAILTISDGM 1074

Query: 1025 KEYEANFFP 1033
            +  E   +P
Sbjct: 1075 ERQELPIWP 1083


>gi|296164423|ref|ZP_06846997.1| DNA-directed DNA polymerase III alpha subunit [Mycobacterium
            parascrofulaceum ATCC BAA-614]
 gi|295900205|gb|EFG79637.1| DNA-directed DNA polymerase III alpha subunit [Mycobacterium
            parascrofulaceum ATCC BAA-614]
          Length = 1181

 Score =  718 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1067 (30%), Positives = 519/1067 (48%), Gaps = 46/1067 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S SFVHL  H+ YS+L+GA  +  +L ++     PA+ +TD  N+F A EF   A  
Sbjct: 1    MNQSSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNAATK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AGI+PIIG +  I                       +   +   + ++   A G + L +
Sbjct: 61   AGIKPIIGVEAYIAPGSRFDTRRIQWGDPGQKSDDVSGSGSYTHLTMVAENATGLRNLFK 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   EG+I  TG  SG +         + A +    +
Sbjct: 121  LSSLASFEGQLGKWSRMDAELIAE-HAEGIIATTGCPSGEVQTRLRLGHDREALESAAKW 179

Query: 175  KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +++FG D  ++ L  H    ++     ++++     +P +ATN+  +++ +    H+ L+
Sbjct: 180  REIFGADNYFLELMDHGLSIEQRVREGLLEIGRKLGIPPLATNDCHYVTRDAAHNHEALL 239

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             V     +S  +R +   D Y    +  +    D          +               
Sbjct: 240  CVQTGKTLSDPNRFKFDGDGYYLKSAAEMRRLWDDQIPGACDSTLLIAERVQPYDDVWAQ 299

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
               +         ++ + L ++ +AGL  R   G        QDY  R ++E+ VI    
Sbjct: 300  RDRMPIFPVPEGHDQASWLHHEVMAGLRRRFPSGV------GQDYIDRAEYEIKVICDKG 353

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F  YFLIVAD I +A+  +I VGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R
Sbjct: 354  FPSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPER 413

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYS 470
             S PD DIDF   RR E++RY  +K+G +RVAQ+ITFG+++ KAAL+D  R    Q  ++
Sbjct: 414  PSAPDIDIDFDDRRRGEMVRYAADKWGQDRVAQVITFGTIKTKAALKDSARIHYGQPGFA 473

Query: 471  QVDRLCKL-IPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
              DR+ K   P   A  +          +   + +  R     DP V  + + ++ LEGL
Sbjct: 474  IADRITKALPPPIMAKDIPLSGITDPEHERYKEAAEVRGLIETDPDVRTIYQTARGLEGL 533

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+ LT+
Sbjct: 534  IRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTI 593

Query: 582  LQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +L+ +   RGV +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQP   
Sbjct: 594  IGDALENIKANRGVDLDLESVPLDDEPTYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEF 653

Query: 641  EDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQ 694
             DI+A+++LYRPGP+       Y +RKN ++ I  IHP ++      L ET G+I+YQEQ
Sbjct: 654  NDIVAVLALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILSETYGLIVYQEQ 713

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            +M IAQ ++ Y++ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++ + 
Sbjct: 714  IMFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFQEGMTANGFSEKAVKALWDTIL 773

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  I
Sbjct: 774  PFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGI 833

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873
             ++PP VN   V+F      I + L A++ VG      +++       F    D+ +++D
Sbjct: 834  TVLPPDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIKTRNEKGKFTDFSDYLNKID 893

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
                N++V ESL+ AGA D   ++R  L     +        +K       ++F    G 
Sbjct: 894  ISACNKKVTESLIKAGAFDSLSHARKGLFLVHTDAVDSVLGTKKAEAIGQFDLFGGSDGE 953

Query: 934  FS-----DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987
                     I + +        +   E+ +LG Y SGHPL+    +L           + 
Sbjct: 954  AGCTDSVFTIKVPE-DEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQTDTQIPAILD 1012

Query: 988  -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  + +R+  ++ S  ++  + G         +     E  FFP
Sbjct: 1013 GDVPNESQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1059


>gi|297621741|ref|YP_003709878.1| DNA polymerase III, alpha subunit [Waddlia chondrophila WSU 86-1044]
 gi|297377042|gb|ADI38872.1| DNA polymerase III, alpha subunit [Waddlia chondrophila WSU 86-1044]
          Length = 1236

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1084 (34%), Positives = 585/1084 (53%), Gaps = 67/1084 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L VHS YS+L+ + S+  I  K      PA+A+TD  NLF A++F +     G++PI
Sbjct: 2    FVPLHVHSQYSILDASASVKAIAAKAKEFGMPAVALTDHGNLFGAVDFYKSCKGNGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC++ I     L+   +            LL    EGY  L  L SR +L +      R
Sbjct: 62   IGCEVYIAPNSRLEKKKERGER--AAFHQTLLAKNDEGYHNLCALSSRGFL-EGFYYFPR 118

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I +  L+E    GLI L+G  S  + +A    +    ++    + ++FG+  Y+ LQRH 
Sbjct: 119  IDMELLKERSR-GLICLSGCMSSKLSQAILDGAGDECDRLADWYLEVFGEDFYIELQRHP 177

Query: 191  GYDR-------------------------YRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
              +                               ++++A    +  VATN+S ++   D+
Sbjct: 178  MSEASLHEGGMYQESWLIQQYQGYIEKQNRLNDALLEIAERKGILYVATNDSHYIERSDW 237

Query: 226  EAHDVLMAVAHSTV----------------VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            +AH+VL+ V                      + K R   + + Y K+  EM  +F DLPE
Sbjct: 238  QAHEVLLNVQSGEPVEIWEKDSLGNPKFRVPNPKRRTYSSHEFYFKSPDEMGELFKDLPE 297

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE-------ENELRNKAVAGLEVR 322
            AL NT+ IA +C+  L       P ++    ++ +  +       E  LR     G+  R
Sbjct: 298  ALSNTLAIADKCTMELDFETKHYPVYVPPSIENTEYTDAERVESVEKFLRQLCAEGIPKR 357

Query: 323  LAQGAIA-------KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
                 +             +   +RL+ E++VIA      Y LIV DFI WAK + IPVG
Sbjct: 358  YTPERLEKVKEVYPDRDPLEVVHERLEEEMSVIAPKGMCDYLLIVWDFINWAKNHGIPVG 417

Query: 376  PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
            PGRGSGAGS+  Y + ITDI+PLRF+L FERF+NP+R+S PD D+D C DRR +VI+Y  
Sbjct: 418  PGRGSGAGSIVLYLIGITDIEPLRFNLFFERFINPERLSYPDIDVDICMDRRGDVIQYTL 477

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
            +KYG + VAQIITFG+++AK  LRDVGR L +P ++V+ + KL+P+D    +    +  D
Sbjct: 478  DKYGKDNVAQIITFGTMKAKMVLRDVGRVLSVPLAKVNEIAKLVPDDLNITLETA-LEKD 536

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
               R+    D    RL+++ +KLEG  R+   HAAGI+I   PL   +P+     +++P 
Sbjct: 537  HDLRQLYEQDEETRRLVDLGKKLEGSIRNTGIHAAGIIICGDPLVNHIPVCVAKDAEMPA 596

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTT 614
            TQ++MK  E+ G++K DFLGLKTLT +Q  ++ + +R   ++D   +P D+ + ++LL  
Sbjct: 597  TQYSMKPAEQVGMLKVDFLGLKTLTAIQTCVNAIKERVGEQIDWVNLPLDNEKAFNLLNQ 656

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
              TLG+FQLES GM+     +  D  E+IIA+ +LYRPGP+D I  + NRK+G+E+I   
Sbjct: 657  GKTLGVFQLESGGMQDLARQLHLDKFEEIIAVSALYRPGPMDMIPSFINRKHGREEIDYD 716

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            HP +  +L ET G+++YQEQVMQIAQ L+ YSL E DVLRRAMGKK  E+M  Q+E+F  
Sbjct: 717  HPWMKEILAETYGIMVYQEQVMQIAQKLANYSLGEGDVLRRAMGKKDAEQMAAQREKFRL 776

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            GA +NGIS+ +++NIF+ + KFA YGFNKSHAAAY+ I+Y TA++K +YP E++AA MT 
Sbjct: 777  GALENGISENVSMNIFDKMEKFAAYGFNKSHAAAYSYIAYVTAFLKANYPEEWMAALMTC 836

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
            +  ++ K+ KF ++ +   I+++PP VN     F      I ++++ IKGVGT+    I+
Sbjct: 837  DRHDLTKLSKFIRECQAMQIKMLPPDVNEAGTTFMASKEGIRFAMSGIKGVGTSVVEAIV 896

Query: 855  EAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
                    F+SL  F  R+DS K+ ++V+E+LV AG  D  G+SR QL  S++ + + A 
Sbjct: 897  AEREKGGRFESLYQFIKRIDSSKVGKKVIENLVEAGCFDFTGWSRDQLRMSVEPMFESAM 956

Query: 914  WVEKNRTNKHENIF---AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
              +K       ++F            +         +  +    E+ +LGF+ +GHP++ 
Sbjct: 957  KEKKEEKAGVRSLFELMGENNENLFAEPPKVNMPTPSRQIYL-KEKELLGFFLTGHPMNS 1015

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK-KTRKGSRIGWVTFSEPAKEYEA 1029
            +K IL ++                 R A +V + +    ++   +   +  S+  + +E 
Sbjct: 1016 FKDILERLSCIALRNVETLDHQTVFRSAFLVETVRTLFSSKSQRKFAILMVSDGIESFEL 1075

Query: 1030 NFFP 1033
              +P
Sbjct: 1076 PIWP 1079


>gi|329940921|ref|ZP_08290201.1| DNA polymerase III subunit alpha [Streptomyces griseoaurantiacus
            M045]
 gi|329300215|gb|EGG44113.1| DNA polymerase III subunit alpha [Streptomyces griseoaurantiacus
            M045]
          Length = 1179

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/1067 (31%), Positives = 536/1067 (50%), Gaps = 47/1067 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F HL VH+ YS+L+GA  L ++ D         IA++D  NL  A +F   A  
Sbjct: 1    MSNKP-FTHLHVHTQYSMLDGAARLKDMFDACNEMGMTHIAMSDHGNLHGAYDFFHSAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +  + A G   L  
Sbjct: 60   AGVTPIIGIEAYVAPESRRNKRKIRWGQPHQKRDDVSGSGGYTHKTIWAADAGGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EGLI  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGELQTRLRLGQFDEALKSAADY 178

Query: 175  KKLFG-DRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG DR ++ L  H     +R  + ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIDIEHRVREGLLEIGKKLGIPPLVTNDSHYTYAHEASAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             +     +S  DR +     Y    ++ +    D  +A +         +  +       
Sbjct: 239  CIQTGKNLSDPDRFKFDGTGYYLKSADEM-YAIDSSDAWQEGCRNTLLVAEQIDTTGMFE 297

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             R +  + D      E    + +   G+E R   G        +D ++++++E++VI +M
Sbjct: 298  KRDLMPKFDIPEGYTEVTWFKEEVRRGMERRFPGG------IPEDRQKQVEYEMDVIIQM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+ 
Sbjct: 412  RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471

Query: 472  VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DR+ K +P D     +        +    ++    R     +P V ++++ ++ +EGL 
Sbjct: 472  GDRITKAMPADVLGKGIDLNGITDPTHPRYSEAGEVRGMYENEPDVKKVIDTAKGVEGLV 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++    +++ VP++      + +TQ++    E  GL+K DFLGL+ LT++
Sbjct: 532  RQMGVHAAGVIMSSETITEHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGLRNLTIM 591

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  +   +G  +DL  +P DD  T+ LL    TLG+FQ +   MR  L  M+PD  E
Sbjct: 592  DDAVKMVKSNKGRDIDLLSLPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFE 651

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQV 695
            DI A+ +LYRPGP+       Y  RKNG ++I  IHP     +  +L  T G+I+YQEQV
Sbjct: 652  DISAVSALYRPGPMGMDSHTNYALRKNGLQEITPIHPELEAPLKEVLDVTYGLIVYQEQV 711

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+++GYSL EAD+LRR MGKK  +E+ K    F +GA KNG S      ++++L  
Sbjct: 712  QKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFTIFQAGAKKNGYSDEAIQALWDVLVP 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H+AAY ++SY TA++K +YP E++AA +T   D+ +K   +  + R+  I+
Sbjct: 772  FAGYAFNKAHSAAYGLVSYWTAFLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMGIK 831

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            ++PP+VN    +F   GD+ I + L+A++ VGT     I+ +      + S  D+  +V+
Sbjct: 832  VLPPNVNESESNFAAQGDDVILFGLSAVRNVGTNVVDSIIRSRKAKGKYASFPDYLDKVE 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F      
Sbjct: 892  AVVCNKRTTESLIKAGAFDSMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGMGEG 951

Query: 934  FSDKITLE-----KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987
             + +              + +     E+ +LG Y S HPL   + +L      G  +   
Sbjct: 952  DTSEPGFGLDVEFSPDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIAQLTG 1011

Query: 988  -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1012 GDFGDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSLECMFFP 1058


>gi|311087135|gb|ADP67215.1| DNA polymerase III alpha chain [Buchnera aphidicola str. JF99
            (Acyrthosiphon pisum)]
          Length = 1161

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1049 (39%), Positives = 615/1049 (58%), Gaps = 41/1049 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P F+HL VHS YS+++G     +++ K A+   PAIAITD NNL+  ++F   A   G
Sbjct: 2    NEPKFIHLHVHSDYSMIDGLSKPEDLVKKAASLNMPAIAITDYNNLYGVIKFYNMAHKLG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PIIG  ++                   +  + LL ST EGY+ LI L+SR Y      
Sbjct: 62   LKPIIGITVNF----------FSDLINNQLTKLTLLASTQEGYKNLILLISRAYQKGYVH 111

Query: 127  QS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
             + V I   W  EI  +GLI+L+GG  G + +      S +    L  ++K F D  Y+ 
Sbjct: 112  NNHVTIEKKWFSEI-NKGLILLSGGPQGELGKVLLNGQSSLISICLSFYQKYFPDSYYLE 170

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQK 243
            L R +R  +       V L+ +  +P+VATN+  FLS+ED++ H + +A+     +   K
Sbjct: 171  LFRTNRDNEETYLHLAVDLSLSTGVPIVATNDVCFLSQEDFKIHKIRIAINEGEILQHSK 230

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             +   +   +LK   EM  +FSD+PEAL N+VEIA+RC+  +        ++   +    
Sbjct: 231  IQNNYSNQQFLKTTKEMSDLFSDIPEALINSVEIAKRCNVFI-----HSGKYFLPQFRTG 285

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ---RLDFELNVIARMKFSGYFLIV 360
            +   E  L  +A  G++ RL    +    +   Y Q   RLD EL VI +M F GYFLIV
Sbjct: 286  KISVEKYLIKEAYKGIKKRLNSRYLDIEKYKDIYSQYINRLDMELTVINKMGFPGYFLIV 345

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FIQWAK NNIPVGPGRGSGAGS+ AYAL IT++DPL F+LLFERFLNP+R+SMPDFDI
Sbjct: 346  MEFIQWAKDNNIPVGPGRGSGAGSLVAYALNITEVDPLSFNLLFERFLNPERISMPDFDI 405

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC ++RD+VI +V   YG   VAQIITFG+L AKA +RDVGR L  PY  +++L KL+P
Sbjct: 406  DFCMEKRDQVIDHVSEIYGKNAVAQIITFGTLTAKAVIRDVGRVLGYPYGFINKLSKLVP 465

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   +  +A + +S        +  V  L++I++KLEG  R+   HA G+VI    ++
Sbjct: 466  LDPGITLK-EAFSKESELFNLYKNNEDVKNLIDIAKKLEGTNRNIGKHAGGVVISPTKIT 524

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-----LAQRGVK 595
               P+Y D + + PVTQF+   IE  GL+KFDFLGL+TLT++  +++         +   
Sbjct: 525  DFCPLYCDEKGNNPVTQFDKNDIEYVGLVKFDFLGLRTLTIISYAVEMINTKLNLNKKRT 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            ++++ IP DD + ++LL    T G+FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+
Sbjct: 585  ININSIPLDDAKCFNLLKNSETTGVFQLESYGMKDLIKRLQPDCFEDMIALVALFRPGPL 644

Query: 656  DNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V       +             H L+ P+L+ T G+I+YQEQVM+IAQ+LSGY+L 
Sbjct: 645  QSGMVDNFINRKHGRENISYPDHKWQHILLKPILESTYGIILYQEQVMEIAQVLSGYTLG 704

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAM KK  ++M +Q+  F  GAS NGI K +++ IF+LL KFA YGFNKSH+ A
Sbjct: 705  SADILRRAMSKKNLKDMSEQRAIFEEGASNNGIDKKLSIKIFDLLEKFAGYGFNKSHSVA 764

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+K+HYP EF+AA+MT ++DN EKI     ++    ++I+PP++N    +F
Sbjct: 765  YALVSYQTLWLKSHYPAEFIAAAMTSDIDNTEKIVILINESLNMGVKIIPPNINLSKYEF 824

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLV 886
             V D   I Y L AIKG+G  + + +++   +   F  L D C R+DS+K+ RRVLE L+
Sbjct: 825  YVNDQGDIVYGLGAIKGIGKNSVQVLIKEREENKFFHDLFDLCMRIDSQKITRRVLEKLI 884

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD--KITLEKFS 944
             +G+ DCF  +R  LLQS+D+    ++   + ++ K +++F   +   +   K  L    
Sbjct: 885  MSGSCDCFDKNRNYLLQSIDDAINASKESFRIKSFKQDSLFGIFQNELNQVKKNNLVNL- 943

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILR-KMGIKGYEESVATIRGNNIRLAAMVVS 1003
            V     + +NE +VLGFY +GHP++ YK  L   +      +     R   I +A ++VS
Sbjct: 944  VCPEKNKLQNEYQVLGFYLTGHPINQYKKELECYVNGVKLSQLKFIKRNKKILVAGIIVS 1003

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + K T+  +RI  +   +     E   F
Sbjct: 1004 IKIKITKNKNRIAILVLDDNTSRLEVVIF 1032


>gi|294628828|ref|ZP_06707388.1| DNA polymerase III, alpha subunit [Streptomyces sp. e14]
 gi|292832161|gb|EFF90510.1| DNA polymerase III, alpha subunit [Streptomyces sp. e14]
          Length = 1179

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/1067 (31%), Positives = 535/1067 (50%), Gaps = 47/1067 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ D         IA++D  NL  A +F   A  
Sbjct: 1    MSKPP-FTHLHVHTQYSLLDGAARLKDMFDACNEMGMTHIAMSDHGNLHGAYDFFHTAQK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +    + G   L  
Sbjct: 60   AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTMWAVNSTGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EG++  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETIAQW-SEGIVASTGCPSGEVQTRLRLGQFDEALKSAADY 178

Query: 175  KKLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG DR ++ L  H     +R    ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIDIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEATAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             +     +S  DR +     Y    S       D  +A +         + ++      +
Sbjct: 239  CIQTGKNLSDPDRFKFDGTGYYLK-STDEMYAIDSSDAWQEGCANTLLVAEMVDTTGMFV 297

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             R +  + D      E    + +   G+E R   G        +D ++++++E++VI +M
Sbjct: 298  KRDLMPKFDIPEGYTEVTWFKEEVRRGMERRFPGG------IPEDRQKQVEYEMDVIIQM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAK N I VGPGRGS AGS+ AYAL ITD+DP+   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYALGITDLDPIPHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+ 
Sbjct: 412  RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471

Query: 472  VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DR+ K +P D     +        S    ++    R     +P V ++++ ++ +EGL 
Sbjct: 472  GDRITKAMPADVLGKGIDLDGITNPSHPRYSEAGEVRAMYENEPDVKKVIDTAKGVEGLV 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++    +++ VP++      + +TQ++    E  GL+K DFLGL+ LT++
Sbjct: 532  RQMGVHAAGVIMSSETITEHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGLRNLTIM 591

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  +   +G+ +DL  +P DD  T+ LL    TLG+FQ +   MR  L  M+PD  E
Sbjct: 592  DDAVKMVKSNKGIDIDLLALPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFE 651

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQV 695
            DI A+ +LYRPGP+       Y  RKNG ++I  IHP     +  +L  T G+I+YQEQV
Sbjct: 652  DISAVSALYRPGPMGMDSHTNYALRKNGLQEITPIHPELEAPLKEVLDVTYGLIVYQEQV 711

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+++GYSL EAD+LRR MGKK  +E+ K    F +GA KNG S      ++++L  
Sbjct: 712  QKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFTIFQAGAKKNGYSDEAIQALWDVLVP 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H+AAY ++SY TA++K ++P E++AA +T   D+ +K   +  + R+  I+
Sbjct: 772  FAGYAFNKAHSAAYGLVSYWTAYLKANHPAEYMAALLTSVKDDKDKSAVYLNECRRMGIK 831

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            ++PP+VN    +F   GD+ I + L+A++ VGT     I+        + S  D+  +V+
Sbjct: 832  VLPPNVNESESNFAAQGDDVILFGLSAVRNVGTNVVESIIRTRKAKGKYSSFPDYLDKVE 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F      
Sbjct: 892  AVVCNKRTTESLIKAGAFDTMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGMGEE 951

Query: 934  FSDKITLE-----KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987
             S +              + +     E+ +LG Y S HPL   + +L      G  +   
Sbjct: 952  TSSEPGFGLDVEFSPDEWDKTYLLAQEREMLGLYVSDHPLFGLENVLADKADAGISQLTG 1011

Query: 988  -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1012 GEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|325982112|ref|YP_004294514.1| DNA polymerase III, alpha subunit [Nitrosomonas sp. AL212]
 gi|325531631|gb|ADZ26352.1| DNA polymerase III, alpha subunit [Nitrosomonas sp. AL212]
          Length = 1167

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/1045 (39%), Positives = 610/1045 (58%), Gaps = 38/1045 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P+F+HL++HS YS+L+  + +++++ K  ADQ PA+A+TD  NLF  ++F Q A  
Sbjct: 1    MPIKPAFIHLRMHSEYSILDSTIRIHDVVKKAVADQMPALALTDLANLFGLVKFYQAAYK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI+GC + I  + +                +++L  T  GY  L  L+SR Y  +Q
Sbjct: 61   NGIKPILGCDIWIANESDRSKPI----------RLLVLCQTHAGYLLLSRLLSRAYRENQ 110

Query: 125  GKQSVRICLSWLQ--EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             +    I  SWLQ  + GTEGLI L+G   G I  +   N+   AE ++  +  LF DR 
Sbjct: 111  FQNRAEIKESWLQPDDWGTEGLIALSGARLGDIGLSLLQNNILQAEIQVQKWATLFPDRF 170

Query: 183  YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +QR     +       + LA    LP+VAT    FL+ EDY+AH+  + +A   ++ 
Sbjct: 171  YLEIQRDGHANEAMLVQHSLALAKKFNLPVVATQAVQFLNVEDYQAHEARVCIAEGYILE 230

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K R +  T   Y K ++EM  +F+D+P AL NT+EIA+RC+ IL++    LP F     
Sbjct: 231  DKRRQKNFTQQQYFKTQTEMTQLFADIPAALTNTIEIAKRCNLILELGVNRLPLFPTPN- 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYF 357
                +  +  LR++A  GL  R+                Y+ RL+FE+N I +M F+GYF
Sbjct: 290  ---NESLDQYLRSQAELGLIKRMTSLFPDAEMRNDRITQYQSRLEFEVNTIIQMGFAGYF 346

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK NN+PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPD
Sbjct: 347  LIVADFINWAKHNNVPVGPGRGSGAGSLVAYSLGITDLDPLRYDLLFERFLNPERISMPD 406

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQDRR+ VI YV+ +YG  +V+QI TFG++ AKA +RD+GR + +PY+ VD+L K
Sbjct: 407  FDIDFCQDRRELVIEYVKQRYGIGKVSQIATFGTMAAKAVIRDIGRVMDLPYNFVDQLAK 466

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            LIP +    +       + +  +       V  LLE+++ LEG+ R+   HA G++I   
Sbjct: 467  LIPFEIGMTLKKAR-QLEPQLNQRAEE-EDVRNLLELAESLEGITRNVGMHAGGVLIASS 524

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-- 595
             ++   P+Y     D  V+Q +   +EK GL+KFDFLGL+TLT+L +++ ++ Q      
Sbjct: 525  EITDFCPIYCTESGDSVVSQLDKDDVEKIGLVKFDFLGLRTLTILDRAVGYIRQLHPNID 584

Query: 596  ------VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                    L  +P DD  TY L+     +GIFQ ES GM   L+  +PD  EDIIALV+L
Sbjct: 585  SPESRLFSLETLPLDDDATYALMRKGNAVGIFQFESRGMIDLLQKAKPDHFEDIIALVAL 644

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            YRPGP+D I  + +RK+G+++I  + P ++P+L  T G++IYQEQVMQIAQ++ GYSL  
Sbjct: 645  YRPGPMDLIPEFIDRKHGRKQIEYLDPRLEPILGPTYGIMIYQEQVMQIAQVIGGYSLGS 704

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM +Q++ F+SGA  NG+S+  A  +F L+ KFA YGFNKSHAAAY
Sbjct: 705  ADLLRRAMGKKKVEEMAQQRDIFVSGAINNGLSEDKATELFGLMEKFAGYGFNKSHAAAY 764

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A+I++QTA++K HYP EF+AA ++ +MD+ +K+  F +D+    I I+PP +N     F 
Sbjct: 765  ALIAFQTAYLKAHYPAEFMAACLSADMDDTDKVHIFVEDSIANGIIILPPDINLSDYRFI 824

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
              D   I + L A+KG G +    I+       PF  L DFC+RVD +  NRRV+ESL+ 
Sbjct: 825  PVDSKNIRFGLGAVKGTGESAVNSIIAVRRQTGPFTDLFDFCNRVDRRIANRRVMESLIR 884

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
             GA D    +R  L+ S+    + A+    ++++   N+F         +  L +    +
Sbjct: 885  VGAFDIINPNRASLMASVGLAIESAEQT--SQSSNQINLFGETSSDAQMQPQLIQAESWH 942

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
               +   E+  LG+YFSGHP D Y   L+       +            LA ++ S + +
Sbjct: 943  DREKLHQEKIGLGYYFSGHPFDTYASELKHFICTRLDRLNPQREPQ--LLAGIIHSIRTQ 1000

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             TR+G  +G +   +     E   F
Sbjct: 1001 MTRRGK-MGVINLDDGKARIEVVIF 1024


>gi|325270548|ref|ZP_08137148.1| DNA-directed DNA polymerase III alpha subunit [Prevotella multiformis
            DSM 16608]
 gi|324987124|gb|EGC19107.1| DNA-directed DNA polymerase III alpha subunit [Prevotella multiformis
            DSM 16608]
          Length = 1239

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/1120 (31%), Positives = 536/1120 (47%), Gaps = 107/1120 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66
             +VHL VH++YS+L+G   +  ++DK  AD    +AITD   +F   EFS          
Sbjct: 3    DYVHLHVHTNYSILDGQSKVTRLVDKAVADGMKGMAITDHGVMFGIKEFSDYCAKVNKGR 62

Query: 67   -------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                    +P+ GC++ +  +              +   +++L     GY+ LI+LVS+ 
Sbjct: 63   KEKGEAPFKPVFGCEMYVARRSMHDKDK--GMHDNSGYHLIVLAKNHHGYKNLIKLVSKA 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            + +D      R     L++   E LI+ +   +G I      +  + A +    + ++FG
Sbjct: 121  W-VDGYYYKPRTDREQLEKYH-EDLIVCSACIAGEIPSKIIHDDIEGAREACEWYHRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     +++ A  + + ++ TN+  F  +E  E
Sbjct: 179  DDFYLELQRHEVKDPTLAANREAYPLQQKANRVLLRFAREYGIKVICTNDCHFEDKETAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++ +  +    R R +   + K R EM  +FSD+PEAL NT+EI  +      
Sbjct: 239  AHDHLLCISTNEDLDDPKRMRYSKQEWFKTRQEMNEVFSDIPEALTNTLEILDKVEIYSI 298

Query: 287  VHAPILPRFIEKECDDIQKE---------------------------------------- 306
             H PI+P F   E    + E                                        
Sbjct: 299  DHGPIMPFFPIPEDFGTEGEWREKFSEDDLYREFTTDENGEHPLPPEEGQKVIARLGGYE 358

Query: 307  -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E + L   A  G +             + + +  + FEL+V+  M F GYFLI
Sbjct: 359  KIYRIKFEADYLAKLAYDGAKRLYGDPL------SDEVKNHIRFELHVMKTMGFPGYFLI 412

Query: 360  VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V DFI  A++   + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD 
Sbjct: 413  VQDFINAAREKLGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R +V+++V +KYGHE  A IIT+ ++  K +++DV R  ++P    + LCK 
Sbjct: 473  DTDFDDDGRGKVLQWVMDKYGHENCAHIITYSTMATKNSIKDVARVERLPLDVANGLCKA 532

Query: 479  IPNDPAHPVSLQ---AIADDSRFREA-RLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP+     + +    AI    R ++A    D      ++ ++ LEG  R    HA G +I
Sbjct: 533  IPDRLPDGMKMNLTNAIRCTPRLQDAEVSEDARERNTIKYAKMLEGTVRGTGIHACGFII 592

Query: 535  GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               P+   VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ L+++   +
Sbjct: 593  CRNPIDDWVPVSTASDPDFPEQKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVI 652

Query: 590  AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             Q     VDL  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +
Sbjct: 653  RQTTGDVVDLDNIPIDDELTYRLYQRGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNA 712

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RK+    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  
Sbjct: 713  LYRPGPMDYIPDFIKRKHDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E+D LR+AMGKK K  +D+ K +FI    +NG    I   I+    KFA Y FNKSHA  
Sbjct: 773  ESDALRKAMGKKKKAIVDQMKPKFIRQGQENGHDPQILEKIWSDWEKFASYAFNKSHATC 832

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ ++YQTA++K HYP E++AA MT     + +I K  ++ +   I  + P VN     F
Sbjct: 833  YSWVAYQTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKAMKIATLGPDVNESRTGF 892

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V     I + LAAIKG+G + A  I+    A+ P+  + DF  RVD   +NR+  ESL 
Sbjct: 893  GVNGKGEIRFGLAAIKGMGASAAESIVREREANGPYKDIYDFAERVDLSNVNRKAFESLA 952

Query: 887  FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            ++G  D FG  R Q           LD I +Y Q  +  +  +  ++F            
Sbjct: 953  YSGGFDSFGLQREQYFAETGKGSLFLDTIVRYGQLYQAEKAEQQNSLFGGMDAVEVMHPV 1012

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------EESVATIRGN 993
              K     +  +   E+ ++G Y S HPLD Y  IL  M            +  A    +
Sbjct: 1013 APKTENWPAIEKLNKERELVGIYLSAHPLDEYSVILNNMCNTRCPQIGRDADLAALSALD 1072

Query: 994  NIRLAAMVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFF 1032
             +    +V +  ++ + + G   G+VT  +     E   F
Sbjct: 1073 EVTFGGIVTAVNERFSQKTGKPFGFVTIEDFNGSGELALF 1112


>gi|317488485|ref|ZP_07947036.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA]
 gi|325831887|ref|ZP_08164984.1| putative DNA polymerase III subunit alpha [Eggerthella sp. HGA1]
 gi|316912417|gb|EFV33975.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA]
 gi|325486208|gb|EGC88660.1| putative DNA polymerase III subunit alpha [Eggerthella sp. HGA1]
          Length = 1153

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/1048 (30%), Positives = 534/1048 (50%), Gaps = 44/1048 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA----CAA 65
            +FVHL  H+ YSLL+G   + +++ + A    PA+AI+D   +    +  +         
Sbjct: 2    AFVHLHNHTEYSLLDGHTHIYDMVKRAADLDMPAVAISDHGVMSGVPQLCEMCDKVEAET 61

Query: 66   G--IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            G  ++PI GC++     + L+   +     P +  ++LL  T EGY  L++LVS  + +D
Sbjct: 62   GKRVKPIYGCEVYFTTDEELRKDTK-----PKLYHLLLLAKTNEGYHNLVKLVSESH-VD 115

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRL 182
                  R   S LQ+ G +G+I  +   +G I +         A +    F   F     
Sbjct: 116  NFYYKPRTTFSMLQKYG-KGIIGSSACIAGIIPKLLDNRQVDEAVEWAKKFASCFEPGDF 174

Query: 183  YVNLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            Y+ LQ                  +  +A    L  +ATN+  +L+ ED  A D ++ +  
Sbjct: 175  YIELQNQGIRTDAGFTQTELNHMLTDVAKAAGLKTIATNDFHYLTREDARAQDYMLCIGT 234

Query: 237  STVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                +  +R R      Y+K   EM     D PEA + TVE+A + + +L+  + +    
Sbjct: 235  GAAFNDANRMRFENDQFYMKTEEEMREALKDFPEACDTTVEVAEKVNVVLERDSILPR-- 292

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                     + EE+  R +   GL               Q+ ++R D+E+ +I +  F  
Sbjct: 293  ---FPLPEGETEESYFRKRVQEGLVKHYGNPV------PQEAQERADYEMGIIIQQGFPA 343

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV ++I+WA+   I VGPGRGS AG++ AYA+ IT +DPL   LLFERFL+P+R+ M
Sbjct: 344  YFLIVQEYIEWARSQGIGVGPGRGSAAGAIVAYAMDITALDPLSNGLLFERFLSPERVEM 403

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DF Q RR+EVI ++++ YG + V+Q+ITFG+LQAK A+RD  R L  PYS  D++
Sbjct: 404  PDIDVDFEQGRREEVINHIKDVYGEDHVSQVITFGTLQAKNAVRDAARVLDYPYSTGDKI 463

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             K+I ++    +    +A +   ++A   +  V  +++ +  +EG  R    HA   +I 
Sbjct: 464  TKMIGDELGITIDKA-LATNPDLKKAYETEEDVKAVIDAALSIEGHVRGEGVHACATIIC 522

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
              P++  VPM RD +    +TQ++  +  + GL+K DFLGL+TL +L  +   + QR   
Sbjct: 523  RDPMADHVPMKRDTKGGGIITQYDGHYTPELGLLKMDFLGLRTLDVLTIACRNIEQRFGT 582

Query: 596  VDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              +   IP DD   + L+ +    G+FQ+E +        + P    DI+A ++L RPGP
Sbjct: 583  KVIPEDIPIDDEGAFKLMQSGNMDGLFQVEGALYVSLFARLPPTRFSDIVASIALNRPGP 642

Query: 655  IDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +++ +   Y    +GK  I      + P+L+ET G ++YQEQ+MQI+  +SG+S  +AD 
Sbjct: 643  LESGMVEDYIKVASGKTSIHYYDERLRPILEETYGTMVYQEQIMQISMAMSGFSAGKADK 702

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LR+AMGKK  + M   +E + +GA +NG    IA  I+E   KFA Y FNKSH+AAYA++
Sbjct: 703  LRKAMGKKKLDVMRALQEDWNTGAVENGYPLEIAKQIWEDAEKFAKYAFNKSHSAAYAIL 762

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
              +TA++K HYP +F+AA ++  M N +++ ++        I ++PP +N+   +F   D
Sbjct: 763  VMRTAYLKAHYPNDFMAAVLSSYMGNTDRLIRYIASCNHSGIPVLPPDINSSNAEFTPTD 822

Query: 833  NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              + + L  ++GVG   A  I+E   A+ PF SL DF +R+D+K  NR+ LE+L+  GA 
Sbjct: 823  EGVRFGLVGVRGVGANVAEAIIEEREANGPFTSLHDFVNRLDAKCYNRKTLEALIKGGAF 882

Query: 892  DCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKFSV 945
            D  GY+R QL+  +D   + + A   +K+R +   ++F          F +++       
Sbjct: 883  DSTGYTRKQLMYFVDETPLLESASKRQKDRESGQVSMFDLFGDDPDSGFEEEVPEPDGVE 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-TIRGNNIRLAAMVVSK 1004
                     E+ ++  Y S HPL  Y+  + +M      +    T    +     M+ + 
Sbjct: 943  WPKRQLLTFEKEIMKIYVSDHPLRPYEGTIARMTKFSLGDLAERTKEIKSAVFVGMISNV 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              K T++G+++   T  +     E   F
Sbjct: 1003 VTKLTKRGTKMATFTLEDTTGHVECICF 1030


>gi|257790804|ref|YP_003181410.1| DNA polymerase III, alpha subunit [Eggerthella lenta DSM 2243]
 gi|257474701|gb|ACV55021.1| DNA polymerase III, alpha subunit [Eggerthella lenta DSM 2243]
          Length = 1153

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/1048 (30%), Positives = 534/1048 (50%), Gaps = 44/1048 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA----CAA 65
            +FVHL  H+ YSLL+G   + +++ + A    PA+AI+D   +    +  +         
Sbjct: 2    AFVHLHNHTEYSLLDGHTHIYDMVKRAADLDMPAVAISDHGVMSGVPQLCEMCDKVEAET 61

Query: 66   G--IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            G  ++PI GC++     + L+   +     P +  ++LL  T EGY  L++LVS  + +D
Sbjct: 62   GKRVKPIYGCEVYFTTDEELRKDTK-----PKLYHLLLLAKTNEGYHNLVKLVSESH-VD 115

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRL 182
                  R   S LQ+ G +G+I  +   +G I +         A +    F   F     
Sbjct: 116  NFYYKPRTTFSMLQKYG-KGIIGSSACIAGIIPKLLDNRQVDEAVEWAKKFASCFEPGDF 174

Query: 183  YVNLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            Y+ LQ                  +  +A    L  +ATN+  +L+ ED  A D ++ +  
Sbjct: 175  YIELQNQGIRTDAGFTQTELNHMLTDVAKAAGLKTIATNDFHYLTREDARAQDYMLCIGT 234

Query: 237  STVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                +  +R R      Y+K   EM     D PEA + TVE+A + + +L+  + +    
Sbjct: 235  GAAFNDANRMRFENDQFYMKTEEEMREALKDFPEACDTTVEVAEKVNVVLERDSILPR-- 292

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                     + EE+  R +   GL               Q+ ++R D+E+ +I +  F  
Sbjct: 293  ---FPLPEGETEESYFRKRVQEGLVKHYGNPV------PQEAQERADYEMGIIIQQGFPA 343

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV ++I+WA+   I VGPGRGS AG++ AYA+ IT +DPL   LLFERFL+P+R+ M
Sbjct: 344  YFLIVQEYIEWARSQGIGVGPGRGSAAGAIVAYAMDITALDPLSNGLLFERFLSPERVEM 403

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DF Q RR+EVI ++++ YG + V+Q+ITFG+LQAK A+RD  R L  PYS  D++
Sbjct: 404  PDIDVDFEQGRREEVISHIKDVYGEDHVSQVITFGTLQAKNAVRDAARVLDYPYSTGDKI 463

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             K+I ++    +    +A +   ++A   +  V  +++ +  +EG  R    HA   +I 
Sbjct: 464  TKMIGDELGITIDKA-LATNPDLKKAYETEEDVKAVIDAALSIEGHVRGEGVHACATIIC 522

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
              P++  VPM RD +    +TQ++  +  + GL+K DFLGL+TL +L  +   + QR   
Sbjct: 523  RDPMADHVPMKRDTKGGGIITQYDGHYTPELGLLKMDFLGLRTLDVLTIACRNIEQRFGT 582

Query: 596  VDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              +   IP DD   + L+ +    G+FQ+E +        + P    DI+A ++L RPGP
Sbjct: 583  KVIPEDIPIDDEGAFKLMQSGNMDGLFQVEGALYVSLFARLPPTRFSDIVASIALNRPGP 642

Query: 655  IDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +++ +   Y    +GK  I      + P+L+ET G ++YQEQ+MQI+  +SG+S  +AD 
Sbjct: 643  LESGMVEDYIKVASGKTSIHYYDERLRPILEETYGTMVYQEQIMQISMAMSGFSAGKADK 702

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LR+AMGKK  + M   +E + +GA +NG    IA  I+E   KFA Y FNKSH+AAYA++
Sbjct: 703  LRKAMGKKKLDVMRALQEDWNTGAVENGYPLEIAKQIWEDAEKFAKYAFNKSHSAAYAIL 762

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
              +TA++K HYP +F+AA ++  M N +++ ++        I ++PP +N+   +F   D
Sbjct: 763  VMRTAYLKAHYPNDFMAAVLSSYMGNTDRLIRYIASCNHSGIPVLPPDINSSNAEFTPTD 822

Query: 833  NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              + + L  ++GVG   A  I+E   A+ PF SL DF +R+D+K  NR+ LE+L+  GA 
Sbjct: 823  EGVRFGLVGVRGVGANVAEAIIEEREANGPFTSLHDFVNRLDAKCYNRKTLEALIKGGAF 882

Query: 892  DCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKFSV 945
            D  GY+R QL+  +D   + + A   +K+R +   ++F          F +++       
Sbjct: 883  DSTGYTRKQLMYFVDETPLLESASKRQKDRESGQVSMFDLFGDDPDSGFEEEVPEPDGVE 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-TIRGNNIRLAAMVVSK 1004
                     E+ ++  Y S HPL  Y+  + +M      +    T    +     M+ + 
Sbjct: 943  WPKRQLLTFEKEIMKIYVSDHPLRPYEGTIARMTKFSLGDLAERTKEIKSAVFVGMISNV 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              K T++G+++   T  +     E   F
Sbjct: 1003 VTKLTKRGTKMATFTLEDTTGHVECICF 1030


>gi|295107511|emb|CBL05054.1| DNA polymerase III, alpha subunit [Gordonibacter pamelaeae 7-10-1-b]
          Length = 1154

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/1048 (31%), Positives = 540/1048 (51%), Gaps = 44/1048 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA----CAA 65
            +FVHL  H+ YSLL+G   + +++ + A    PA+AI+D   +    +  +         
Sbjct: 2    AFVHLHNHTEYSLLDGHTHIYDMVKRAADLGMPAVAISDHGVMSGVPQLCEMCDKVEEET 61

Query: 66   G--IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            G  ++PI GC++     + LK     +   P +  ++LL  T EGY  L++LVS  + +D
Sbjct: 62   GKRVKPIYGCEVYFTTDEELK-----RDGKPKLYHLLLLAKTNEGYHNLVKLVSESH-VD 115

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRL 182
                  R   S LQ+ G +G+I  +   +G I +         A      F   F     
Sbjct: 116  NFYYKPRTTFSMLQKYG-KGIIGSSACIAGIIPKLLDNRQFDDAVAWANKFASCFEPGDF 174

Query: 183  YVNLQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            Y+ LQ                  +  +A    L  +ATN+  +L++ED +A D ++ VA 
Sbjct: 175  YIELQNQGIRTDAGFTQTELNHMLTDVARAAGLKTIATNDFHYLTKEDAKAQDYMLCVAQ 234

Query: 237  STVVSQKDRPRVTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
               V+ + R R + D +      EM     D PEA + TVE+A +   +L+  + +    
Sbjct: 235  GAAVNDEKRMRFSNDEFYMKSEEEMREALKDFPEACDTTVEVAEKVDVVLERDSILPR-- 292

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                     + EE+  R +   GL               Q+ ++R D+E+ +I +  F  
Sbjct: 293  ---FPLPEGETEESYFRRRVQEGLVKHYG------SPVPQEAQERADYEMGIIIQQGFPA 343

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV ++I+WA+   I VGPGRGS AG++ AYA+ IT +DPL   LLFERFL+P+R+ M
Sbjct: 344  YFLIVQEYIEWARSQGIGVGPGRGSAAGAIVAYAMDITALDPLSNGLLFERFLSPERVEM 403

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DF Q RR+EVI ++++ YG + V+Q+ITFG+LQAK A+RD  R L  PY+  DR+
Sbjct: 404  PDIDVDFEQGRREEVINHIKDVYGEDHVSQVITFGTLQAKNAVRDAARVLDYPYNTGDRI 463

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            CKLI ++    +    +A +   ++A   +  V  +++ ++ +EG  R    HA   +I 
Sbjct: 464  CKLIGDELGITIDKA-LATNPDLKKAYETEEDVKAVIDAAKSIEGHVRGEGVHACATIIC 522

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594
              P++  VPM RD +    +TQ++  +  + GL+K DFLGL+TL +L  +   + QR   
Sbjct: 523  RDPMADHVPMKRDTKGGGIITQYDGHYTPELGLLKMDFLGLRTLDVLSIACRNVEQRFGT 582

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            KV    IP DD   + L+ +    G+FQ+E +        + P    DI+A ++L RPGP
Sbjct: 583  KVVPEEIPIDDEAAFKLMQSGNMDGLFQVEGALYVSLFARLPPTRFSDIVASIALNRPGP 642

Query: 655  IDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +++ +   Y    +GK +I      + P+L+ET G ++YQEQ+MQI+  +SG+S  +AD 
Sbjct: 643  LESGMVDDYVKVASGKTQIHYYDDRLRPILEETYGTMVYQEQIMQISMAMSGFSAGKADK 702

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LR+AMGKK  + M   +E + +GA +NG S  IA  I+E   KFA Y FNKSH+AAYA++
Sbjct: 703  LRKAMGKKKLDVMRALQEDWNTGAVENGFSLAIAKQIWEDAEKFAKYAFNKSHSAAYAIL 762

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
              +TA++K HYP +F+AA ++  M N +++ ++          ++PP +N+   +F   D
Sbjct: 763  VMRTAYLKAHYPNDFMAAVLSSYMGNTDRLIRYIASCNHNGTPVLPPDINSSNAEFTPTD 822

Query: 833  NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + I + L  ++GVG   A  I+E   A+ P+ SL DF +R+D+K  NR+ LE+L+  GA 
Sbjct: 823  DGIRFGLVGVRGVGANVAEAIIEEREANGPYTSLHDFVNRLDAKCYNRKTLEALIKGGAF 882

Query: 892  DCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKFSV 945
            D  GY+R QL+  +D   + + A   +K+R     ++F          F +++       
Sbjct: 883  DSTGYTRKQLMYFVDETPLLESASKRQKDRDRGQVSMFDLFGDDPDSGFEEEVPEPDGVE 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-TIRGNNIRLAAMVVSK 1004
                     E+ ++  Y S HPL  Y+  + +M      +    T    +     M+ + 
Sbjct: 943  WPKRQLLSYEKEIMKIYVSDHPLRPYEGTIARMTKFQLGDLAERTKEIKSATFVGMISTV 1002

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              K T++G+++   T  +     E   F
Sbjct: 1003 VTKLTKRGTKMATFTLEDTTGHIECICF 1030


>gi|184201117|ref|YP_001855324.1| DNA polymerase III subunit alpha [Kocuria rhizophila DC2201]
 gi|183581347|dbj|BAG29818.1| DNA polymerase III alpha subunit [Kocuria rhizophila DC2201]
          Length = 1184

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1072 (34%), Positives = 561/1072 (52%), Gaps = 56/1072 (5%)

Query: 5    LEKS---PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            +  +     F HL VH+ YS+L+GA  LN++ ++       ++A TD   +F A +F  K
Sbjct: 1    MTSATGKKGFTHLHVHTEYSMLDGAARLNDLFEECHRLGMDSLATTDHGFVFGAFDFWNK 60

Query: 62   ACAAGIQPIIGCQLDIDMQ----DNLKMTNQGKTPFP-----TVPSIVLLVSTAEGYQRL 112
            A AAGI+PIIG +  +       D  ++                  + LL  ++EG Q L
Sbjct: 61   ARAAGIKPIIGVEAYLTPGTARQDRTRVKFADGGRDDVSGAGAYTHMTLLAQSSEGMQNL 120

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
                ++  L  Q     R+    L + G +GLI  TG  SG +           A K   
Sbjct: 121  FRASTKASLEGQLY-KPRMDRELLNQYG-KGLIATTGCPSGEVQTRLRLGQYDEAVKAAA 178

Query: 173  TFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             F+ +FG +  Y  L  H  G ++     +++LA    LPLVATN+  +   ED ++H  
Sbjct: 179  EFRDIFGAENFYCELMDHGLGIEKRVTQDLLRLAKELNLPLVATNDLHYTHAEDAKSHAA 238

Query: 231  LMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
            L+ V   + +    R +    + YLK+  +M  +F D P+A +NT+EIA RC       A
Sbjct: 239  LLCVQSGSTLQDPKRFKFDADEFYLKSPEQMRELFRDFPDACDNTLEIAERCEVEFDTSA 298

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              +PRF   E +D    E +    +   GL  R  +G         D R++ ++E  +I 
Sbjct: 299  NYMPRFPTPEGED----ETSWFIKEVEKGLHYRFPEG------IPDDVREQAEYEKKIII 348

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFL+VADFI W+K N I VGPGRGSGAGS+ AYA+ IT+++PL   L+FERFLN
Sbjct: 349  QMGFPGYFLVVADFINWSKDNGIRVGPGRGSGAGSMVAYAMRITELNPLAHGLIFERFLN 408

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            PDR+SMPDFD+DF   RR EVI YV  KYG ERVA I+T+G+++AK AL+D  R L  P+
Sbjct: 409  PDRVSMPDFDVDFDDRRRSEVIHYVTEKYGDERVAMIVTYGTIKAKQALKDSSRVLGYPF 468

Query: 470  SQVDRLCKLIPND---------PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            S  +RL K +P D           +    +   +    RE    DP   ++ E +Q LEG
Sbjct: 469  SMGERLTKAMPPDVMGKGISLQDVYDKDAKRYDEAGELREVLEDDPESMKVFETAQGLEG 528

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R    HAAG+++   PL  ++P+ R  +    +TQF+    E  GLIK DFLGL+ LT
Sbjct: 529  LKRQWGVHAAGVIMSSDPLIDIIPLMRREQDGQVITQFDYPTCEGLGLIKMDFLGLRNLT 588

Query: 581  LLQKSLDFLA--QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            ++  +L+ +A  + G  +DL  +P DD  +Y LL    TLG+FQL+   MRQ L+ M+PD
Sbjct: 589  IISDALENIALNRDGFVLDLEHLPIDDPGSYELLARGDTLGVFQLDGGPMRQLLKLMRPD 648

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQ 692
              EDI A ++LYRPGP+  ++   Y  RKNG ++I  IHP +   L++    T G+I+YQ
Sbjct: 649  NFEDISATIALYRPGPMGANSHTNYALRKNGAQEITPIHPELAEPLEDILGTTYGLIVYQ 708

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQVM IAQ ++GYSL +AD+LRRAMGKK K E+DKQ + F  G    G S+     ++++
Sbjct: 709  EQVMAIAQKVAGYSLGQADILRRAMGKKKKAELDKQYQGFHQGMVDRGYSEAAIKALWDI 768

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  F+DY FNK+H+AAY ++SY TA++K HYP E++AA +T   D+ +K+  +  + R  
Sbjct: 769  LLPFSDYAFNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKLAMYLTECRHM 828

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR 871
             I ++PP VN   ++F      I + + A++ VG    + +++A      F S  DF ++
Sbjct: 829  GITVLPPDVNESELNFTPVGTDIRFGMGAVRNVGANVVQAMVDARNEQGKFTSFNDFLAK 888

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH--ENIF-- 927
            V +   N+R +ES++ AGA D  G++R  L+   +   +     +K   N     +IF  
Sbjct: 889  VPAVVCNKRTIESMIKAGAFDQLGHTRRSLVMCHEQAVEDVVAQKKKEDNGEFTFDIFSM 948

Query: 928  --AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
              + +    +  + +              E+ +LG Y S HPL      L +        
Sbjct: 949  GGSEDDEQETFSVEVPDVPEWERKDLLAFEREMLGLYVSDHPLRGLDDALGQYTDTAIAP 1008

Query: 986  SV----ATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEANFF 1032
             +        G  + +  M+ S  ++  +  G+    V   + +   E  FF
Sbjct: 1009 LLTEENTRPDGAVVTIGGMITSLSRRIAKSSGNAYARVELEDRSGSIEVMFF 1060


>gi|89900825|ref|YP_523296.1| DNA polymerase III subunit alpha [Rhodoferax ferrireducens T118]
 gi|89345562|gb|ABD69765.1| DNA polymerase III, alpha subunit [Rhodoferax ferrireducens T118]
          Length = 1185

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1055 (38%), Positives = 595/1055 (56%), Gaps = 51/1055 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL++H+ +S+++G   + + +   AAD QPA+AITD +NLF A++F + A   G++P+
Sbjct: 2    FIHLRLHTEFSVVDGTNRIGDSVKAAAADGQPALAITDLSNLFGAIKFYKAARKCGVKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG ++ ++                        V   +GY  L EL++R +     K    
Sbjct: 62   IGAEIWLEGLGQDASALSRLLLL---------VQNKQGYLNLSELLARAWTQQGNKAQAS 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
            + L WL+E+G EGLI+L+G  +GP+ +A        A    L    +F  R Y+ LQR  
Sbjct: 113  VKLDWLKELG-EGLIVLSGAQAGPVGQALLQGDVARALDAALQLAGVFTHRFYLELQRAG 171

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
            R  D       VQLA    LP+VAT+   F   +D+EAH+  + +A   ++S   R  R 
Sbjct: 172  RPDDEAHVVATVQLAARAGLPVVATHPIQFAGPDDFEAHEARVCIADGEILSNPRRVRRF 231

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + Y K+ ++M ++F+D+P AL NT+EIARRC+  L +  P LP F   E +  +   +
Sbjct: 232  TREQYFKSSAQMQALFADVPSALANTLEIARRCNLTLVLDKPQLPDFPTPEVNGQRMTPD 291

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +  R  +  GL+ R+A          Q+   Y  RL+FELN I +M F GYFLIV DFI 
Sbjct: 292  DYFRYASHEGLKERMAHLYPDAAQRGQEMPRYLARLEFELNTIVKMGFPGYFLIVGDFIN 351

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N  PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPDFDIDFCQ 
Sbjct: 352  WAKNNGCPVGPGRGSGAGSLVAYSLKITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQT 411

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA- 484
             R+ VI YV++KYG + V+QI+TFG++ A+AA+RDVGR L M Y+  D + KLIPN P  
Sbjct: 412  NRNLVIDYVKSKYGKDAVSQIVTFGTMAARAAVRDVGRVLDMSYTFCDGISKLIPNKPGV 471

Query: 485  -------------HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                            ++ A+  +    E    +  V  LLE+++KLEGL R+   HA G
Sbjct: 472  SVSLQLPPPDRKKDDKTVYAVEAEPLLAEREAKEEDVKTLLELARKLEGLTRNVGMHAGG 531

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            ++I    L+   P+Y+   SD  V+QF+   +E  GL+KFDFLGL TLT+L+ + DF+ +
Sbjct: 532  VLIAPGKLTDFCPLYQQPGSDSAVSQFDKYDVEAIGLVKFDFLGLATLTILEIARDFIIE 591

Query: 592  RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R           +P DD   Y L     T  +FQ ES GM+  L+  +P  +ED+IAL +
Sbjct: 592  RHRGQENFAFENLPLDDMRVYKLFQEGKTEAVFQFESRGMQGMLKDAKPTRLEDLIALNA 651

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RK+G+E +   HPL+  ML ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 652  LYRPGPMDLIPSFVARKHGREVVEYPHPLVAEMLSETYGIMVYQEQVMQTAQILGGYSLG 711

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  +EM +Q++ F  GA+KN I++  A  +F+L+ KFA YGFNKSHAAA
Sbjct: 712  GADMLRRAMGKKDADEMARQRQIFRDGAAKNNINQAKADEVFDLMEKFAGYGFNKSHAAA 771

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y++++Y TAW+K HY  EF  A+MT+EMD+ +K+K   +DA +  +   PP VN     F
Sbjct: 772  YSLLAYHTAWLKVHYTAEFFCANMTVEMDDTDKLKVLYEDALKMGLTFEPPDVNRGGSRF 831

Query: 829  K-VGDNRIYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKKL 877
            + + D  I Y L+AIKG G      I+ A              PF SL DFC RVD  ++
Sbjct: 832  EPISDKVIRYGLSAIKGSGQQAIEAIVAAREGRGVGPSGDVAGPFKSLFDFCVRVDRSRV 891

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK---GTF 934
            N+R +E+L+ AGA D    +R  LL S D   ++      N       +F  +    G+ 
Sbjct: 892  NKRTVEALIKAGAFDAIQLNRASLLASTDLAFEFGAAALAN--ANQGGLFDMDDDAQGSS 949

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
            + +  L +        R   E+  +GFY SGH  D     +R+   +  ++ +       
Sbjct: 950  TQEPELVQAVPWGVKERLTFEKTAVGFYLSGHLFDEVALEVRRFAKRQIDDLIDIREPQ- 1008

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              LA ++   +    ++G         + +   EA
Sbjct: 1009 -LLAGIITDFRVINGQRGKL-ALFKLDDKSGVIEA 1041


>gi|260222868|emb|CBA32866.1| DNA polymerase III subunit alpha [Curvibacter putative symbiont of
            Hydra magnipapillata]
          Length = 1244

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1054 (38%), Positives = 597/1054 (56%), Gaps = 50/1054 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   +++++   A D QPA+AITD NNLF A++F +     G++P+
Sbjct: 57   FVHLRLHTEFSVVDGTTRIDDVIKMAAKDGQPALAITDLNNLFGAIKFYKGGRGKGVKPV 116

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG ++ ++                 V  I+LLV   +GY  + EL++R +  +  K    
Sbjct: 117  IGAEIVLE---------GLGGDATAVTRIILLVQNKQGYLNISELIARAFTQNVVKNQAV 167

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
            I ++WL+E+  EGLI L+G  +GP+ +A     +  A    L    +F  R Y+ LQR  
Sbjct: 168  IKMAWLKEL-NEGLIALSGAQAGPVGQALVQGDTARAHDVALQLAGVFPHRFYIELQRAG 226

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
            R  D       V+LA   +LP+VAT+   F  ++D+EAH+  + +A   ++S   R  R 
Sbjct: 227  RADDEAHVVAAVKLAARMKLPVVATHPIQFAEQDDFEAHEARICIADGEILSNPKRVRRF 286

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + Y K+ ++M ++F+D+P A+ NT+EIA+RCS  L +  P LP F     +  +   E
Sbjct: 287  TREQYFKSAAQMEALFADIPSAIANTMEIAKRCSLTLVLGKPQLPAFPTPLVNGQRMTPE 346

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R  +  GL+ R+      +     +   Y +RL+FEL  I +M F GYFLIV DFI 
Sbjct: 347  EYFRYASFEGLKERMVHLYPNEQEREAEMPRYVERLEFELGTILKMGFPGYFLIVGDFIN 406

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N  PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDFCQ 
Sbjct: 407  WAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQT 466

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             R+ VI YV++KYG + V+QI TFG++ A+  +RDVGR L M Y+  D + KLIPN P  
Sbjct: 467  NRNLVIDYVKDKYGKDAVSQIATFGTMAARGVVRDVGRVLDMSYTFCDGISKLIPNKPGT 526

Query: 486  PVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             V+              + A   +    E    +  V  LLE+++KLEG+ R+   HA G
Sbjct: 527  NVTLQLPPTDGKKSDKYVYATEAEPILAEREAKEEDVKTLLEMARKLEGMTRNIGMHAGG 586

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            ++I    L+   P+Y+   S+  V+Q++   +E  GL+KFDFLGL TLT+L+ + +F+ +
Sbjct: 587  VLIAPGKLTDFCPLYQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAAEFIRK 646

Query: 592  RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R     K     +P DD + Y L +   T  +FQ ES GM+  L   +P  +ED+IAL +
Sbjct: 647  RHPGQEKFAYENLPLDDPKVYKLFSEGKTEAVFQFESRGMQGMLRDAKPSRLEDLIALNA 706

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RK+G+E++   HP +  ML ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 707  LYRPGPMDLIPSFVARKHGREQVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGYSLG 766

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             AD+LRRAMGKK KEEMD+ +  F +GA   +GI +  A  +F+L+ KFA YGFNKSHAA
Sbjct: 767  GADLLRRAMGKKKKEEMDEHRGIFRAGAFKTHGIPEEKADEVFDLMEKFAGYGFNKSHAA 826

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AY++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA +  +   PP++N     
Sbjct: 827  AYSLLAYHTGWIKVHYTAEFFCANMTVEMDDTDKLKVLFEDAEKMGLSFEPPNINRGNYR 886

Query: 828  FK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD-------KPFDSLEDFCSRVDSKKLNR 879
            F+ + +  I Y L AIKG G      I+ A           PF SL DF  RVD  +LN+
Sbjct: 887  FEPISNKEIRYGLGAIKGTGEQAILAIVAAREGRGPTEEAGPFKSLFDFARRVDRTRLNK 946

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFS 935
            R +E+L+ AGA D    +R +L+ S+D  + +              +F      + G+ +
Sbjct: 947  RCVEALIKAGAFDTLHLNRAELVASMD--RAFEFAAASAANANQVGLFDMGGDDDHGSST 1004

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
             +  L +        R   E+  +GFY SGH  D     +RK   +  EE   +      
Sbjct: 1005 QEPDLVEVMPWGVKERLTQEKTAVGFYLSGHLFDEVATEVRKFAKRPIEELQDSREPQ-- 1062

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
             LA +V   +    ++G         + +   EA
Sbjct: 1063 LLAGIVTELRVINGQRGKL-ALFKLDDKSAMIEA 1095


>gi|294827603|ref|NP_710439.2| DNA polymerase III subunit alpha [Leptospira interrogans serovar Lai
            str. 56601]
 gi|293385447|gb|AAN47457.2| DNA polymerase III alpha subunit [Leptospira interrogans serovar Lai
            str. 56601]
          Length = 1136

 Score =  716 bits (1849), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1004 (37%), Positives = 574/1004 (57%), Gaps = 28/1004 (2%)

Query: 41   QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
              ++A+TD  N+F A+EF  +A   GI+PIIG +  +   +  + T   K        ++
Sbjct: 1    MSSVAMTDHGNMFGAVEFYNEAIKQGIKPIIGSEFYVSP-NRKQETEMVKIADGNAYHLI 59

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            LL    EGY+ LI L S+ Y  +   +  RI    L    +EGL+ LT   +G ++R   
Sbjct: 60   LLAKNEEGYKNLIRLSSKSYT-EGFYKKARIDYDLLDRY-SEGLVCLTACLAGEVNRKIL 117

Query: 161  FNSSQVAEKRLLTFKKLF-GDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSL 218
                  + +      ++F  +  Y+ +Q H   ++     QV +      +PLV TN+S 
Sbjct: 118  EGKIDESFQLAGKLNEIFRKEDFYMEIQNHGIPEQMTVAKQVYEFGKKTGIPLVVTNDSH 177

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            FL + D EA D+L+ +     ++         + Y+KN  EM  IF ++PEA  NT+EI+
Sbjct: 178  FLKKNDQEAQDILLRIGMQKRITDPMEFGFNGEFYVKNGDEMAKIFPEIPEAFYNTLEIS 237

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
             + +  LQ    +LP F   E  D     ++ L      G+E +           + + +
Sbjct: 238  NKVNLKLQFGNYLLPEFEVPEGYD----ADSYLEKLIWEGIERKYPN-------LSPEIK 286

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +R+ FELN I  MKF+GYFLIV D+I +AK+N IPVGPGRGS AGS+ AYAL IT+++PL
Sbjct: 287  ERVIFELNTIKNMKFAGYFLIVQDYINYAKRNGIPVGPGRGSAAGSIVAYALGITNVEPL 346

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
            + +LLFERFLNPDR  MPD D DFC +RR+EVI Y++ +YG E+V QIITF SL AKAAL
Sbjct: 347  QHNLLFERFLNPDRKDMPDIDTDFCVERREEVINYIRRRYGEEKVGQIITFNSLAAKAAL 406

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
            +DV R L +P+ + + + K  PN     +S +A++  S  +     D    ++  I+Q+L
Sbjct: 407  KDVARVLNLPFGEANEMTKAFPNKLGMSIS-EALSTSSELKNFSEKDDINHKIFAIAQRL 465

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDF 573
            EG YR    HAAG+VI   PL ++VP+      + P     VTQ++   +E  GLIK D 
Sbjct: 466  EGNYRQPGRHAAGVVISPYPLEEVVPLSTVAEKEKPGVRAIVTQYDKNNLESIGLIKMDI 525

Query: 574  LGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGLK LT L  ++  + QR  ++++L  I +DD  TY LL    TLGIFQLES+G+   +
Sbjct: 526  LGLKNLTTLDYAIKLIEQRRGIRINLDEISYDDANTYSLLRKANTLGIFQLESTGITDLV 585

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
               Q    ++I+AL++LYRPGP+   +   Y +RK+GK+++   HP  +P+LKET GV +
Sbjct: 586  AKSQVSNFDEIVALIALYRPGPMGEGMLDEYLDRKSGKKQVTYPHPSCEPILKETFGVPV 645

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVM I++++ G+S+ ++DVLR+AM KK  + MDK K +F+ GA K GI + +A ++F
Sbjct: 646  YQEQVMSISRVVGGFSVGDSDVLRKAMAKKKADLMDKLKVQFVEGAVKQGIQEKVAKDLF 705

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            E L +F  YGFNKSH+ AYA+I+YQTA++K +Y +E+L A +  +      I K+  +AR
Sbjct: 706  EQLERFGGYGFNKSHSVAYAIITYQTAYLKANYTIEYLTALLASDHGKTTDIVKYINNAR 765

Query: 811  QFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDF 868
            +  IQI+ P V+     F V DN  I + L+A+KGVG T A  I++A      F +L+DF
Sbjct: 766  EMGIQILNPDVSESQASFSVIDNTTIRFGLSAMKGVGETAANSIIQARTKVGSFRTLQDF 825

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
               +D++ +N++V E+L+ AGALD FGY+R  L +S+D+I  +AQ  ++       ++F 
Sbjct: 826  ALNIDTRLINKKVFEALIQAGALDSFGYTRKCLFESVDSILTFAQKEQERANEGQFSLFG 885

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
            +E+ +FS  +  +         + + E+ + G Y SGHPLD Y+  L+ +     E+   
Sbjct: 886  NEESSFSLNLPKDAL-EWEIDEKLKREKAIAGLYLSGHPLDKYEKQLKSLKTIPIEKFDD 944

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               G  + +A ++ SK  K +++          +   E E   F
Sbjct: 945  LKSGTKVEVAGVISSKNIKLSKRNEEFANFKLEDRTGEIECVAF 988


>gi|294787463|ref|ZP_06752716.1| DNA polymerase III, alpha subunit [Parascardovia denticolens F0305]
 gi|315226967|ref|ZP_07868755.1| DNA-directed DNA polymerase III alpha subunit [Parascardovia
            denticolens DSM 10105]
 gi|294484819|gb|EFG32454.1| DNA polymerase III, alpha subunit [Parascardovia denticolens F0305]
 gi|315121099|gb|EFT84231.1| DNA-directed DNA polymerase III alpha subunit [Parascardovia
            denticolens DSM 10105]
          Length = 1189

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/1076 (30%), Positives = 534/1076 (49%), Gaps = 58/1076 (5%)

Query: 5    LEK--SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            + +    SFVHL  H+ YS L+GA+ +  ++       Q A+ ITD  N+  A E  + A
Sbjct: 1    MTRVADSSFVHLHNHTDYSTLDGAVPVKKMVAVAKDLGQKAVGITDHGNMHGAYEMWRTA 60

Query: 63   CAAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
              AGI+PIIG +  I                 +  +   +   +   + +      G   
Sbjct: 61   VDAGIKPIIGIEAYITPGTARGDKTRVHWGTKEQHSDDVSANGSYTHMTMWAQDDTGLVN 120

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L++  S   L     ++ R+    LQ    +G+I  TG  SG +         + A +  
Sbjct: 121  LLKASSVANLEGLMGKNPRMDRDILQTYH-QGIIATTGCPSGAVQTRLRLGQYKEALREA 179

Query: 172  LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
               + +FG +  YV +  H    +      ++++A     PLVATN+  +  E D  A D
Sbjct: 180  GELQDIFGKENFYVEIMDHGLEIETRVTQDLLRIAKEIGAPLVATNDCHYGLESDAAAQD 239

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVH 288
             L+ +   + ++  DR R     Y    ++ +   F + P+A +NT+EIA RC+ +   +
Sbjct: 240  ALLCINSGSRLTDSDRFRFNGSGYFLKSAQQMRDLFKEFPQACDNTLEIAERCNVMFDDY 299

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                        +    +  +   +    GLE R   G        +D  ++ D+E  VI
Sbjct: 300  EDGAFMPEFDCPEG--WDATSLFLHDVEQGLEKRYPAGV------PEDVAKQADYECGVI 351

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +M+F GYFL+VAD+I WAK + + VGPGRGS AGS+ AYA+ IT++DP++  L+FERFL
Sbjct: 352  CQMQFCGYFLVVADYINWAKTHGVMVGPGRGSAAGSMVAYAMGITELDPIKHGLIFERFL 411

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+S+PD D+DF    R++V+RYV  KYG ++VAQ +T+G+++ K AL+D  R +   
Sbjct: 412  NPERVSLPDIDVDFDPAGREKVLRYVTEKYGSDKVAQCVTYGTIKTKQALKDSARIMDYD 471

Query: 469  YSQVDRLCKLIPNDPAH---------PVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            +   + + K +P               ++ +   +   FR+    +P V ++ E ++ +E
Sbjct: 472  FQMGETMTKALPGAVGGKDISLHDIFDLTAKRYPEAQEFRDLYNENPDVQKITEEAKGIE 531

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R    HA   ++  +P++   P+ +        T F     E  GL+K DFLGL  L
Sbjct: 532  GLIRQTGVHACATIMASQPITNTSPLMKR-TDGTVTTTFEYHTCETLGLVKMDFLGLANL 590

Query: 580  TLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++++++  +       +DL  IP DD  TY LL++  TLG+FQL+S GM+  L+ ++PD
Sbjct: 591  TVIKEAIKNIHDNGKGDIDLEKIPIDDKATYDLLSSGHTLGVFQLDSDGMQSLLKQLKPD 650

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQ 692
               DI AL++LYRPGP+  D+   Y  RKNG ++I  IHP ++      L ET G+I+YQ
Sbjct: 651  NFNDISALIALYRPGPMDVDSHNNYAKRKNGLQEITPIHPELEKPLAQVLDETYGLIVYQ 710

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV   A++L+GYSL  ADVLRRAMGKK  E + K+K  F +G  ++G S+  A  ++++
Sbjct: 711  EQVQSAARILAGYSLGRADVLRRAMGKKKPEVLAKEKIPFFAGMKEHGYSEEAAQAVWDV 770

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  FA Y FNK+H+AAY ++SY TA++KTHYPVEF+AA +  E  N +K   +  + R+ 
Sbjct: 771  LVPFAGYAFNKAHSAAYGLVSYWTAYLKTHYPVEFMAALLQGERSNKDKTALYLGECRRM 830

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS----ADKPFDSLEDF 868
            NI+++PP VN     +      I + L A++ VG      I+           F +  D+
Sbjct: 831  NIKVLPPDVNESVGHYSAVGKDIRFGLGAVRNVGDKVVDAIVAERDKAGGKGKFVNFLDW 890

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
             +R+  + LN+R +ESL+  GA D    +R  L             +++       ++FA
Sbjct: 891  INRMPVEVLNKRTVESLIKGGAFDSIDPNRRALFTIHQTAIDQVIPLKRKEAEGQFDLFA 950

Query: 929  HEKGTF--------SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
              +              I++      +   +   E+ +LG Y S HPL     +L  +  
Sbjct: 951  DSEEDDSASAAALGDANISVPPIDEWDKKTKLNFEREMLGLYVSDHPLSGLASVLASLSD 1010

Query: 981  KGYEESVA----TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                + +           I +A +V    ++ ++ G     VT  +     +A FF
Sbjct: 1011 MSIAQLLNRAATMPEKAQITIAGLVTGVDRRVSKAGKPWAIVTLEDLEGSIQALFF 1066


>gi|291276386|ref|YP_003516158.1| DNA polymerase III subunit alpha [Helicobacter mustelae 12198]
 gi|290963580|emb|CBG39412.1| DNA polymerase III, alpha chain [Helicobacter mustelae 12198]
          Length = 1184

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1061 (35%), Positives = 585/1061 (55%), Gaps = 49/1061 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+ HL +H+ YS+L+GA  + N++ ++      ++++TD  N+F A+EF +   A GI+P
Sbjct: 2    SYTHLHLHTEYSMLDGANKIKNLIQRLKELGMSSVSMTDHGNMFGAIEFYKSMKAEGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +   + L               + L      GY+ L+ L S  ++ +      
Sbjct: 62   IIGMEAYVHNYEEL-----NSKEGKQRFHLCLYAKNEVGYKNLMFLSSMAFI-EGFYYYP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFF---------FNSSQVAEKRLLTFKKLFGD 180
            RI    L+E  +EGL+  +    G ++                 ++A++  L ++ +FG+
Sbjct: 116  RISKKLLRE-HSEGLVASSACLGGEVNFHLNTSERNKKRGAKGIEMAKEVALEYRDIFGE 174

Query: 181  RLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ + RH    +     + ++++    + L+ATN++ ++S++D++  +V+  +     
Sbjct: 175  DFYLEIMRHGINHQENIDDLIIRISQETGIKLIATNDAHYISQKDHKMQEVVQTLGQGKT 234

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++  +R + T  + Y+K+  EM  IF+D+PEAL NT EI  +C+  +++           
Sbjct: 235  LNDPNRLKHTVFEFYVKSSEEMERIFADIPEALRNTQEIVEKCNLEIELKDEKTNPPTPP 294

Query: 299  ECDDIQKEE----------ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                 ++             +    K+  GLE  L    I      Q YR RL+ E+ +I
Sbjct: 295  TFIFTKEYAKLEGQEIDNDADFFAYKSRQGLEEYLK---IIPQEKHQIYRDRLEEEIRII 351

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +MKF GY LIV DFI +AK  NIPVGPGRGS AGS+ A+ L ITDIDP++++LLFERFL
Sbjct: 352  TQMKFPGYMLIVWDFIHFAKSQNIPVGPGRGSAAGSLVAFCLKITDIDPMKYNLLFERFL 411

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD D DFCQ RR EVI Y+  KYG   VAQ+ITFG L AK A+RDV R L MP
Sbjct: 412  NPERVSMPDIDTDFCQRRRGEVIEYMIQKYGKYNVAQVITFGKLLAKNAIRDVARVLDMP 471

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
                D   KLIPN     +     A + +  E    +P    + E + +LEGL R+A  H
Sbjct: 472  LKDADAFAKLIPNQLGIKLEDAH-ALEPKIEEFMNQNPKARDVWEYALQLEGLNRNAGKH 530

Query: 529  AAGIVI-GDRPLSQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            AA IV+  ++ L    P+       D  VTQ++MK++E   LIKFDFLGLKTLT++  +L
Sbjct: 531  AAAIVLDSEKELWHKTPLCTVGKSDDSLVTQYSMKYLEPVDLIKFDFLGLKTLTVVHDAL 590

Query: 587  DFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            + + +R   ++D   +  DD + Y  + +  TLGIFQ+ESS  +   + ++P   EDIIA
Sbjct: 591  ELIKKRYGKEIDFLSVDVDDKKVYETIQSGDTLGIFQIESSMFQGLNKRIKPSNFEDIIA 650

Query: 646  LVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            +++L RPGP+++ +   + NRK+G E+I  +   ++P+LK T G I+YQEQVMQI Q + 
Sbjct: 651  IIALGRPGPMESGMVDDFINRKHGLEEITYMFDALEPILKPTYGTIVYQEQVMQIVQTIG 710

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G+SL  AD++RRAMGKKIKEEM++ K  F +GA KNG  +  A +++EL+ KFA YGFNK
Sbjct: 711  GFSLGGADLVRRAMGKKIKEEMERLKSDFATGAEKNGFDRAKAEDLWELIVKFAGYGFNK 770

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAYA+I++QTA++KT+Y  EF+AA ++ E   +E + K+  + ++ ++  M P VN 
Sbjct: 771  SHSAAYAMITFQTAYLKTYYKEEFMAALLSSESGKIESVAKYINEVKKMDMDFMSPHVNI 830

Query: 824  PCVDFKVGD--------NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874
               +F V +         +I + L+AIKGVG    ++I+        F SLEDF SRVD 
Sbjct: 831  SEKNFGVANFEHEGMGIKKIIFGLSAIKGVGDEPIQNIISVREKGGDFKSLEDFISRVDF 890

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
             K+ +RVLE L+ +G LD  GYSR  +L++LD I +  +  +K + +  + +F   +   
Sbjct: 891  SKITKRVLEPLIKSGGLDGLGYSRACMLKNLDAICEAGRRKDKAKESMAQGLFGGLEDEV 950

Query: 935  SDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIR 991
               +  +   F         + E   LG Y SGHPL+ Y+  +  + G            
Sbjct: 951  EQNVRFDFSNFEEFPLRDLLDLEFECLGIYVSGHPLEEYRESIEGLQGFVPSVSLGEVEE 1010

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   +A  V    +K ++     G+V   +   + E  FF
Sbjct: 1011 DSYCLIAGKVSEITRKMSKSNKPYGYVNLLDLYGKIEIMFF 1051


>gi|15646069|ref|NP_208251.1| DNA polymerase III subunit alpha [Helicobacter pylori 26695]
 gi|2494191|sp|P56157|DPO3A_HELPY RecName: Full=DNA polymerase III subunit alpha
 gi|2314638|gb|AAD08502.1| DNA polymerase III alpha-subunit (dnaE) [Helicobacter pylori 26695]
          Length = 1211

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1078 (34%), Positives = 585/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  ++      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     N+             A+K    +
Sbjct: 115  FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +    KA  GL+ RL    +        Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLNFEDDASYFAYKAREGLKERL---VLVPKEKHDQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F   +G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMEGGTKEQVVLDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGIADILDRYGKFELMLF 1068


>gi|167765014|ref|ZP_02437135.1| hypothetical protein BACSTE_03408 [Bacteroides stercoris ATCC 43183]
 gi|167697683|gb|EDS14262.1| hypothetical protein BACSTE_03408 [Bacteroides stercoris ATCC 43183]
          Length = 1274

 Score =  716 bits (1848), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1147 (31%), Positives = 570/1147 (49%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF+          
Sbjct: 12   DFVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 71

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC A I        +PIIGC++ +       
Sbjct: 72   KGEIKDLKKRIAGIESGEIECEDKEAEIAACRAKITEAENKLFKPIIGCEMYVA---RRT 128

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVSR + +       R   + L++   EGL
Sbjct: 129  MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTMG-YYMRPRTDRNELEKYH-EGL 186

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +    +  + AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 187  IVCSACIGGEVPKKIINDQLEEAEEAIRWYKNLFGDDYYLELQRHKATVSRANHEAYPLQ 246

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +   +++++ A  + + ++ +N+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 247  QKANAKLLEYARKYNIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 306

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    ++E       
Sbjct: 307  MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEEYRRKYTE 366

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L   A  G +      
Sbjct: 367  KDLFDEFTQDENGNVVLDEEAAKAKIKRLGGYEKLYRIKLEADYLAKLAFDGAKRLYGDP 426

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                   + + ++RL FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS 
Sbjct: 427  L------SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSA 480

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V  KYG E+VA 
Sbjct: 481  VAYCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAH 540

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL 503
            IIT+G++  K A++DV R  ++P S+ DRL KL+P+           AIA     + A  
Sbjct: 541  IITYGTMATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQAAEA 600

Query: 504  -ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558
              DP V   L+ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+
Sbjct: 601  SPDPLVRDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 660

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL++++++++ +   RG+ +D+  I   D  TY L     T
Sbjct: 661  EGSVIEDTGLIKMDFLGLKTLSIIKEAVENVRLHRGLSLDIDKISIKDPATYKLYCDGRT 720

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+
Sbjct: 721  IGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPI 780

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI+G  
Sbjct: 781  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQ 840

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + 
Sbjct: 841  KNGHDAKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLS 900

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA 856
            ++  I K   + +   I+++ P VN   + F V  +  I + L A+KGVG    + IME 
Sbjct: 901  DITTITKLMDECKSMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVQSIMEE 960

Query: 857  S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907
               + P+  + DF  RV+    N++ LE L  AG  D F    R Q           ++ 
Sbjct: 961  RAKNGPYTGIFDFVQRVNLNACNKKNLECLALAGGFDSFPELKREQYFAVNTKNEVFIET 1020

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E         + +    +   R   E+ ++G Y S HP
Sbjct: 1021 LVRYGNRYQADKAAAVNSLFGGENVVDIATPEIPQAERWSDLDRLNKERDLVGIYLSAHP 1080

Query: 968  LDVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y  +L  +      E      + G  I +  +V S ++  ++ G+  G     + + 
Sbjct: 1081 LDEYAVVLEYVCNTHMAELEDKTALVGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSG 1140

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1141 SAELPFF 1147


>gi|187929482|ref|YP_001899969.1| DNA polymerase III subunit alpha [Ralstonia pickettii 12J]
 gi|309781742|ref|ZP_07676475.1| DNA polymerase III subunit alpha [Ralstonia sp. 5_7_47FAA]
 gi|187726372|gb|ACD27537.1| DNA polymerase III, alpha subunit [Ralstonia pickettii 12J]
 gi|308919383|gb|EFP65047.1| DNA polymerase III subunit alpha [Ralstonia sp. 5_7_47FAA]
          Length = 1172

 Score =  716 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1061 (38%), Positives = 607/1061 (57%), Gaps = 53/1061 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             SP FVHL++HS YS+++G + L++ +   A D   A+A+TD  N F  + F ++A   G
Sbjct: 2    NSPRFVHLRLHSEYSVVDGNVRLDDAVKAAAKDGMGALALTDLANAFGLVRFYKEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI+G  + I   D                 ++LLV   +GY  L +L++R +L +Q +
Sbjct: 62   VKPIVGADVWITNHDERDKP----------TRLLLLVRDKQGYLNLCQLLARAWLSNQHR 111

Query: 127  QSVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                I   W  E G E      GL+ L+G  +G I       +  +A K    + ++F  
Sbjct: 112  GRAEIAPEWFDEPGVENAPLATGLLALSGAMAGDIGMTLANGNDALARKLATNWSRVFPG 171

Query: 181  RLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
              Y+ LQR  H G + Y   Q V+LA   +LP+VAT+   F++ +D+ AH+    +A   
Sbjct: 172  AFYIELQRAGHAGTEAYI-QQAVKLASAMQLPVVATHPVQFMTPDDFTAHEARTCIAEGE 230

Query: 239  VVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            +++   R  R T + Y K + EM ++F+D+P AL N+V+IA+RC+  L++  P LP F  
Sbjct: 231  LLANPRRARRFTTEQYFKTQDEMCALFADIPSALANSVQIAQRCNLKLELGKPKLPLFPT 290

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
             +   +    ++ L   A  GLE R+         +     +Y  RL+FE   I +M F 
Sbjct: 291  PDGMSL----DDYLVQLAKEGLEKRMEVLFPDEAVRESKRAEYYARLEFETGTIIKMGFP 346

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+S
Sbjct: 347  GYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVS 406

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFDIDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD 
Sbjct: 407  MPDFDIDFCQHGRDRVIQYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDG 466

Query: 475  LCKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            + KLIP  P   V+L+    ++    E    +  V +LLE++Q++EG+ R+   HA G++
Sbjct: 467  VAKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVL 526

Query: 534  IGDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK---SLDFL 589
            I    L+   P+Y +       V+Q++   +E  GL+KFDFLGL TLT+L      +  L
Sbjct: 527  IAPGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRML 586

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                   + S IP  D + + +L T  T+ +FQLES GM+  L+  +PD  EDIIALV+L
Sbjct: 587  DPSKADWNCSHIPLTDKKAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVAL 646

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            YRPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  
Sbjct: 647  YRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGG 706

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM + +  F +GA+K+G+S   A  IF+L+ KFA YGFNKSHAAAY
Sbjct: 707  ADLLRRAMGKKKAEEMAEHRALFRAGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAY 766

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDF 828
            A+++Y TAW+K H+P EF+AA+M+L MD+ +K+K    DAR +  + ++PP +N     F
Sbjct: 767  ALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDARGKNGLTVLPPDINASQYRF 826

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
               D   I Y L  +KG G      I+ A  D PF  L DFC RVD +++NRR +E+LV 
Sbjct: 827  APTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVR 886

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSV 945
            AGA D    +R QLL S+          +K       ++F    G  +++    L     
Sbjct: 887  AGAFDSLNANRAQLLASIG--LAMEAAEQKAAAANQVSLFDLMSGDDAEQHRPELVDEPA 944

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA------------TIRGN 993
              +  + + E++ LGFY SGH  D  +  +R+       +                    
Sbjct: 945  WTTKRKLQEEKQALGFYLSGHLFDECRDEVRRFARTTLADLAREVTDKGNGGGYGNRDAR 1004

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE--YEANFF 1032
            N  +A ++V ++ + T++G  +  V   + +     E   F
Sbjct: 1005 NKTVAGVIVGQRTQMTQRGK-MLIVMLDDGSASEATEVTVF 1044


>gi|118475097|ref|YP_892396.1| DNA polymerase III subunit alpha [Campylobacter fetus subsp. fetus
            82-40]
 gi|118414323|gb|ABK82743.1| DNA polymerase III alpha subunit [Campylobacter fetus subsp. fetus
            82-40]
          Length = 1331

 Score =  716 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1068 (36%), Positives = 596/1068 (55%), Gaps = 54/1068 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              F HL +H+ YSLL+GA  +  +  ++      + AITD  N++ AL+F +   A GI+
Sbjct: 2    SDFTHLHLHTEYSLLDGANKIKVLAKRLKELNIKSCAITDHGNMYGALDFYKTMKAEGIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG +  I   +++      +        + L      GYQ L+ L S  Y+       
Sbjct: 62   PIIGLEAYIHNHEDISNKESRQR-----FHLCLFAKNEVGYQNLMYLSSMSYIKG-YYYH 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF---------FNSSQVAEKRLLTFKKLFG 179
             RI    L+E  +EGL+  +   +G ++                 + A++  L +K +FG
Sbjct: 116  PRINKKLLRE-HSEGLVCSSACLAGEVNFHLNLSDRNLKRGAGGYESAKRVALEYKDIFG 174

Query: 180  DRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            D  Y+ + RH   D+ R    +++L+    + L+ATN++ + +++   A  + + ++ + 
Sbjct: 175  DDFYLEIMRHGIGDQQRIDDDIIRLSMETGIKLIATNDAHYTTKDSAVAQKIFVYISANK 234

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
                K R +V  + Y K+  EM +IF+D+PE +ENT EI  +C+  +++     P F   
Sbjct: 235  NFDDKVREQVLSEFYAKSADEMSAIFADMPEVIENTNEIVEKCNLEIKLGDATPPNFKFT 294

Query: 296  -----------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                          + +   + +      +   GLE RL     +     Q Y+ RLD E
Sbjct: 295  QEYAKERGIILPHPQNEYDLENDSFLFEYECKQGLEKRLEFIDPS---KHQIYKDRLDLE 351

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            +N I  MKF GY LIVADFI  AK+  IPVGPGRGS AGS+ AYAL ITDIDPL ++LLF
Sbjct: 352  INTINNMKFPGYMLIVADFINEAKRRGIPVGPGRGSAAGSLVAYALRITDIDPLPYNLLF 411

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFCQ+RR EVI YV  KYG   VAQ+ TFG L AK  +RDV R 
Sbjct: 412  ERFLNPERISMPDIDVDFCQNRRGEVIDYVIEKYGEYNVAQVATFGKLLAKGVIRDVARV 471

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQA----------IADDSRFREARLADPSVDRLLEI 514
            + MPYS+ D + KLIP++    +                 + +  E    +    ++ E 
Sbjct: 472  MGMPYSEADAMAKLIPDELGITLKAHKNKKGDMEDGAFEKEPKIGELIAKNDLAKQVWEY 531

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR--SDLPVTQFNMKWIEKAGLIKFD 572
            S +LEGL R+   HAAGIVI +  L +  P+++     +   VTQ+   ++E   LIKFD
Sbjct: 532  SCELEGLNRNPGMHAAGIVISNEELWKKAPLWKQSNAEAGHYVTQYTKDYLEDVDLIKFD 591

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +   + +R     L   I F+D +TY  + +  TLGIFQ+ESSGM+  
Sbjct: 592  FLGLKTLTVIDNAKKLIKERFGVDILWEKIDFNDQKTYETIQSGNTLGIFQIESSGMQSL 651

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
               ++PDC EDIIA+++LYRPGP+++ +   + + K+GK+KI      + P+L+ T GVI
Sbjct: 652  AAKLRPDCFEDIIAMIALYRPGPLNSGMVDDFIDIKHGKKKIEYAFAALKPILEPTYGVI 711

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQ+ Q + G+SL  AD++RRAM KK ++EM   K +++ GA +NG  +  A  +
Sbjct: 712  VYQEQVMQVVQTVGGFSLGGADLVRRAMSKKKEDEMLHLKTQYLEGAKRNGFDEGKADAL 771

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            FEL+ KFA+YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +N++KI K+  + 
Sbjct: 772  FELIMKFAEYGFNKSHSAAYALITFQTAYLKTYYPAEFMAALLTSEENNIDKIIKYIDEI 831

Query: 810  RQFNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
            ++ NI+++PP+VN    +F V    G + I Y +AAIKGVG      I++A  D PF+S+
Sbjct: 832  KRLNIKLLPPNVNYSVREFSVIQKDGSDSIIYGMAAIKGVGVGAVEDIIKAREDGPFESV 891

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
            + F S+ D   +NRRV ESL+ +GA D FG++R  L+ +L+ I + ++ +   + N   +
Sbjct: 892  DSFISKTDCTTVNRRVFESLIKSGAFDDFGFTRKMLIHNLETIIENSKRISDIKKNATNS 951

Query: 926  IFAHEKGTFSDKITLEKF-SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            +F+ +       + L       +     + EQ +LG Y SGHPLD Y+  + K+      
Sbjct: 952  LFSDDDSMSEISVDLVNIKDEFDKKEILKFEQEILGVYVSGHPLDEYRDKIDKINYTVSS 1011

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            E      G+ I +   +     K T+ G ++  +   +     EA  F
Sbjct: 1012 EFENVEDGSEILVVGKIEDTTTKITKTGKKMAIINILDIHGNIEATAF 1059



 Score = 47.1 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 5/62 (8%), Positives = 20/62 (32%)

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            ++     +     ++     + + I +   +     + T+ G  +  +   + +   E  
Sbjct: 1123 FQNYFDTIKHATIKDIPNLTKESEILIIGKMSHINIRTTKSGMEMAILNIVDISGNSEMI 1182

Query: 1031 FF 1032
             F
Sbjct: 1183 AF 1184


>gi|319647332|ref|ZP_08001554.1| DnaE protein [Bacillus sp. BT1B_CT2]
 gi|317390679|gb|EFV71484.1| DnaE protein [Bacillus sp. BT1B_CT2]
          Length = 1127

 Score =  716 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1025 (37%), Positives = 585/1025 (57%), Gaps = 36/1025 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQVHS YSLL  A S+ ++  K       A+A+TD   ++ A+EF +     GI+PI
Sbjct: 16   FVHLQVHSGYSLLNSAASVEDLTAKAKELGYSAMALTDDEVMYGAVEFYKSCKKRGIKPI 75

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    +   +  +++            +VLL  T +GYQ L+++ S +    Q K    
Sbjct: 76   IGLTASVLTDEKEQLS----------YPLVLLAKTNKGYQNLLKISSVL----QSKSKTG 121

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
            I   WL+    EGLI LT G +  ++        + A+   L    +FG+   Y++ Q +
Sbjct: 122  IKEKWLKSYH-EGLIALTTGGTSHVEALLKEGLIEEAKDAALRCLSIFGEGSFYLSYQPY 180

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
            +G D     ++++L+    +P+ AT +  ++ +ED  A+  L A+     +++  +    
Sbjct: 181  KG-DPLLSERILELSEHTGIPIAATGDVRYIEKEDAAAYTCLKAIKAGEKLNEDMKAEGD 239

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                LK  +EM+ I+ D P+ALENTV+IA RC   L +    LP++         K  ++
Sbjct: 240  LHLELKPPAEMLDIYRDRPDALENTVKIADRCQVDLSLGQTRLPKYPAPSG----KNADD 295

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L      GL+              ++Y +RL +EL VI  M FS YFLIV DF+++A  
Sbjct: 296  YLAELCFLGLKK-------RFEAAPKEYVERLKYELKVIRDMAFSDYFLIVWDFMKFAHD 348

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I  GPGRGS AGS+ AY L ITD+DPL+  LLFERFLNP+R+SMPD DIDF   RRDE
Sbjct: 349  NGIITGPGRGSAAGSLVAYTLFITDVDPLKHKLLFERFLNPERISMPDIDIDFPDTRRDE 408

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+YV+NKYG   VAQI TFG+L AKAALRDVGR + +   + D+L KLIP+ P   +  
Sbjct: 409  VIQYVKNKYGALHVAQITTFGTLAAKAALRDVGRVMGISPKEADQLAKLIPSKPGVTLKE 468

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
               A      +       +  + + +QK+EGL RH S HAAG+V+ + PL+ ++P+  + 
Sbjct: 469  AR-ALSPELDKRLNGSKKLQDIFKTAQKIEGLPRHTSIHAAGVVLSEEPLTNIIPVQ-EG 526

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
               + +TQ++M ++E  GL+K DFLGL+ LTL++     + +   V +D S IP+DD +T
Sbjct: 527  HGGVYLTQYSMGYLEDLGLLKMDFLGLRNLTLIESIKTLIEKSERVTIDFSAIPYDDEQT 586

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + LL    T GIFQLES+GMR  L+ ++P  +EDI+A+ +LYRPGP++NI +Y  RK+G+
Sbjct: 587  FKLLAEGDTTGIFQLESAGMRNVLKRLKPSSLEDIVAVNALYRPGPMENIPLYIERKHGR 646

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
              +   H  +  +LK+T GVI+YQEQ+M IA  ++G+ L EAD+LRRA+GKK KE +D +
Sbjct: 647  VPVSYPHEDLADILKDTYGVIVYQEQIMMIASRMAGFRLGEADLLRRAVGKKNKEILDTE 706

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  FISG  K G S   A  +++L+ KFA+YGFN+SHA AY++I YQ A++K HYP+ F+
Sbjct: 707  RNHFISGCLKKGYSVQAANEVYDLIVKFANYGFNRSHAVAYSMIGYQLAYLKAHYPLYFM 766

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +T  + N EK+ ++  +A+   + ++ PS+N     F V +  + YSL A+KGVG  
Sbjct: 767  CGLLTSAIGNEEKLAQYIYEAKGKGLNVLGPSINKSGYPFVVENGALRYSLRAVKGVGIA 826

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
              + I  A  +KPF  L DFC R   K +NR+ +E+L+FAGA+D FG +R  LL S+D  
Sbjct: 827  AVKEIYRARKEKPFADLFDFCVRTSVKSVNRKTIEALIFAGAMDEFGENRATLLASVDVA 886

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             ++A+    +  N     F  E    + K    +           +E+  LG YFS HPL
Sbjct: 887  LEHAELFAGD--NDQLGFFLDE--GLTIKPKYAETEEMPLVDLLAHEKETLGIYFSDHPL 942

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             V++  L + G     + +A+ R     L  ++   +  +T+ G  + ++  S+ + E E
Sbjct: 943  SVHRKKLDRAGALPIIQLLASGR-KKAALGGLLTRMKTIRTKTGQTMAFLELSDESGEME 1001

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 1002 AVVFP 1006


>gi|52081424|ref|YP_080215.1| DNA polymerase III DnaE [Bacillus licheniformis ATCC 14580]
 gi|52786800|ref|YP_092629.1| DNA polymerase III DnaE [Bacillus licheniformis ATCC 14580]
 gi|52004635|gb|AAU24577.1| DNA polymerase III (alpha subunit) [Bacillus licheniformis ATCC
            14580]
 gi|52349302|gb|AAU41936.1| DnaE [Bacillus licheniformis ATCC 14580]
          Length = 1114

 Score =  716 bits (1847), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1025 (37%), Positives = 585/1025 (57%), Gaps = 36/1025 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQVHS YSLL  A S+ ++  K       A+A+TD   ++ A+EF +     GI+PI
Sbjct: 3    FVHLQVHSGYSLLNSAASVEDLTAKAKELGYSAMALTDDEVMYGAVEFYKSCKKRGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    +   +  +++            +VLL  T +GYQ L+++ S +    Q K    
Sbjct: 63   IGLTASVLTDEKEQLS----------YPLVLLAKTNKGYQNLLKISSVL----QSKSKTG 108

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
            I   WL+    EGLI LT G +  ++        + A+   L    +FG+   Y++ Q +
Sbjct: 109  IKEKWLKSYH-EGLIALTTGGTSHVEALLKEGLIEEAKDAALRCLSIFGEGSFYLSYQPY 167

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
            +G D     ++++L+    +P+ AT +  ++ +ED  A+  L A+     +++  +    
Sbjct: 168  KG-DPLLSERILELSEHTGIPIAATGDVRYIEKEDAAAYTCLKAIKAGEKLNEDMKAEGD 226

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                LK  +EM+ I+ D P+ALENTV+IA RC   L +    LP++         K  ++
Sbjct: 227  LHLELKPPAEMLDIYRDRPDALENTVKIADRCQVDLSLGQTRLPKYPAPSG----KNADD 282

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L      GL+              ++Y +RL +EL VI  M FS YFLIV DF+++A  
Sbjct: 283  YLAELCFLGLKK-------RFEAAPKEYVERLKYELKVIRDMAFSDYFLIVWDFMKFAHD 335

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I  GPGRGS AGS+ AY L ITD+DPL+  LLFERFLNP+R+SMPD DIDF   RRDE
Sbjct: 336  NGIITGPGRGSAAGSLVAYTLFITDVDPLKHKLLFERFLNPERISMPDIDIDFPDTRRDE 395

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+YV+NKYG   VAQI TFG+L AKAALRDVGR + +   + D+L KLIP+ P   +  
Sbjct: 396  VIQYVKNKYGALHVAQITTFGTLAAKAALRDVGRVMGISPKEADQLAKLIPSKPGVTLKE 455

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
               A      +       +  + + +QK+EGL RH S HAAG+V+ + PL+ ++P+  + 
Sbjct: 456  AR-ALSPELDKRLNGSKKLQDIFKTAQKIEGLPRHTSIHAAGVVLSEEPLTNIIPVQ-EG 513

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
               + +TQ++M ++E  GL+K DFLGL+ LTL++     + +   V +D S IP+DD +T
Sbjct: 514  HGGVYLTQYSMGYLEDLGLLKMDFLGLRNLTLIESIKTLIEKSERVTIDFSAIPYDDEQT 573

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + LL    T GIFQLES+GMR  L+ ++P  +EDI+A+ +LYRPGP++NI +Y  RK+G+
Sbjct: 574  FKLLAEGDTTGIFQLESAGMRNVLKRLKPSSLEDIVAVNALYRPGPMENIPLYIERKHGR 633

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
              +   H  +  +LK+T GVI+YQEQ+M IA  ++G+ L EAD+LRRA+GKK KE +D +
Sbjct: 634  VPVSYPHEDLADILKDTYGVIVYQEQIMMIASRMAGFRLGEADLLRRAVGKKNKEILDTE 693

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  FISG  K G S   A  +++L+ KFA+YGFN+SHA AY++I YQ A++K HYP+ F+
Sbjct: 694  RNHFISGCLKKGYSVQAANEVYDLIVKFANYGFNRSHAVAYSMIGYQLAYLKAHYPLYFM 753

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +T  + N EK+ ++  +A+   + ++ PS+N     F V +  + YSL A+KGVG  
Sbjct: 754  CGLLTSAIGNEEKLAQYIYEAKGKGLNVLGPSINKSGYPFVVENGALRYSLRAVKGVGIA 813

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
              + I  A  +KPF  L DFC R   K +NR+ +E+L+FAGA+D FG +R  LL S+D  
Sbjct: 814  AVKEIYRARKEKPFADLFDFCVRTSVKSVNRKTIEALIFAGAMDEFGENRATLLASVDVA 873

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             ++A+    +  N     F  E    + K    +           +E+  LG YFS HPL
Sbjct: 874  LEHAELFAGD--NDQLGFFLDE--GLTIKPKYAETEEMPLVDLLAHEKETLGIYFSDHPL 929

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             V++  L + G     + +A+ R     L  ++   +  +T+ G  + ++  S+ + E E
Sbjct: 930  SVHRKKLDRAGALPIIQLLASGR-KKAALGGLLTRMKTIRTKTGQTMAFLELSDESGEME 988

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 989  AVVFP 993


>gi|114770394|ref|ZP_01447932.1| DNA polymerase III subunit alpha [alpha proteobacterium HTCC2255]
 gi|114549231|gb|EAU52114.1| DNA polymerase III subunit alpha [alpha proteobacterium HTCC2255]
          Length = 1128

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 463/1017 (45%), Positives = 654/1017 (64%), Gaps = 29/1017 (2%)

Query: 28   SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTN 87
             +  +   +  +Q PA+A+TDTNN+F ALEFS+ A   G+QPI+GCQ+++         +
Sbjct: 2    HVKKLPSAVIKEQMPAVALTDTNNMFGALEFSEIASIEGVQPIVGCQMNLAYMTADNPRD 61

Query: 88   QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIML 147
            +   P P    IVLL  +  GY  L++L S ++L     +   I  + LQ+   +GLI L
Sbjct: 62   RNPLPLP----IVLLAQSEIGYLNLMKLSSCLFLESGD-EPAHITTTQLQKY-NDGLICL 115

Query: 148  TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY-------DRYRESQV 200
            TGG+ GP+ +         A+  L    ++F +R YV +QRH          ++  E   
Sbjct: 116  TGGALGPVGQLLQDGHIDKAKILLKHLSEIFLNRTYVEIQRHGSDGEKYTLEEQKTEKYF 175

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNRSE 259
            +++AY+ ELPLVATN+  F + E Y AHD L+ ++  + V Q+D R R+TP+HY K+  E
Sbjct: 176  LEMAYSMELPLVATNDVYFPNREMYAAHDALLCISEGSYVDQQDGRRRLTPEHYFKSSGE 235

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M+ +F DLPEA++NT+EIA+RC+F +                   ++E  ELR +A  GL
Sbjct: 236  MIELFKDLPEAIDNTIEIAKRCAFKVYKRD--------PILPKFAEDEVQELRRQANEGL 287

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
            + RL    I        Y+ RL+FEL++I  M F GYFLIVADFI+W+K N+IPVGPGRG
Sbjct: 288  KKRLE--VIQHATTVDVYQDRLNFELDIIEGMGFPGYFLIVADFIRWSKSNDIPVGPGRG 345

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            SGAGS+ AYALTITD+DPLR+SLLFERFLNP+R+SMPDFDIDFC DRR+EVIRYVQ KYG
Sbjct: 346  SGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRYVQGKYG 405

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA-IADDSRF 498
             +RV QIITFG L +KAA+RDVGR LQMPY QVDRL KLIP +   PVS++  +A++ + 
Sbjct: 406  RDRVGQIITFGGLLSKAAIRDVGRVLQMPYGQVDRLSKLIPVEGVKPVSIEKALAEEPQL 465

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
            RE   ++  VDR+L+ +Q++EGL R+ASTHAAG+VI DRP+ +LVP+Y+D RSD+P TQF
Sbjct: 466  REMAKSEEVVDRMLKYAQQVEGLLRNASTHAAGVVIADRPIDELVPLYQDPRSDMPATQF 525

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
            NMKW+E+AGL+KFDFLGLKTLT+++ ++D + +RG+ V++  I  +D  T+ L  +  T+
Sbjct: 526  NMKWVEQAGLVKFDFLGLKTLTVVKGAVDLIRKRGINVNIDAIDLEDKATFDLYASAKTV 585

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
             +FQ+ESSGM  AL  M+P+CIEDI+ALV+LYRPGP++NI  Y + KNG+     +HP I
Sbjct: 586  AVFQVESSGMMDALRRMKPNCIEDIVALVALYRPGPMENIPQYCDVKNGRADRELMHPSI 645

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            D +L+ETQG+I+YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+ EMDK++ +F+ GA  
Sbjct: 646  DHLLEETQGIIVYQEQVMQIAQEMAGYSLGGADLLRRAMGKKIQAEMDKERPKFLEGAFN 705

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NG+    A  +++LL KFA+YGFNKSHAAAYAV+SYQTAW+K +YPVEF+A+ M  ++  
Sbjct: 706  NGVEPKKAEEVWDLLDKFANYGFNKSHAAAYAVVSYQTAWLKANYPVEFMASVMNCDLHL 765

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
             +K+  +  + ++  I+I+PP +N     F V D  I Y+L  +K VG+   R   +A  
Sbjct: 766  TDKLHVYFDEVKRLGIEIIPPCINRSEALFSVNDGMIAYALGGLKNVGSDAMRLFTDARI 825

Query: 859  DKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
            +   F  L D   RVD +++ +R LE L+ +GA D    +R ++ +SLD +  Y+    +
Sbjct: 826  NGGLFLDLIDVARRVDLRRVGKRPLEMLIRSGAFDQLDSNRKKVFESLDALVGYSSATHE 885

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
               +    +F            L          R   E + +GFY SGHPLD Y   L++
Sbjct: 886  EMNSSQGGLFGDAGEDL-PAPRLPMPEDWLPIERLTEEHKAIGFYLSGHPLDDYMGALKR 944

Query: 978  MGIKGYEESVATIRGNNI--RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              I    E     +G  I  ++A  V  KQ +K+ KG+R  +   ++P   YE   F
Sbjct: 945  KNILTLHELEQKAQGGKIIAKIAGSVSGKQVRKSAKGNRFAFAQLTDPTGAYEVTIF 1001


>gi|317129921|ref|YP_004096203.1| DNA polymerase III subunit alpha [Bacillus cellulosilyticus DSM 2522]
 gi|315474869|gb|ADU31472.1| DNA polymerase III, alpha subunit [Bacillus cellulosilyticus DSM
            2522]
          Length = 1128

 Score =  715 bits (1845), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1032 (34%), Positives = 586/1032 (56%), Gaps = 40/1032 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSLL     L  ++ +       A+AITD + ++  + F +      I+P
Sbjct: 2    SFVHLHVHSEYSLLRSTGKLEELVKQAKHLGYEALAITDIDAMYGVIPFYKACLKNNIKP 61

Query: 70   IIGCQL-DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIG +L  +  QD +K  +           ++ L    EGYQ LI L +R          
Sbjct: 62   IIGVELAYVKNQDEVKKDHH---------RLLFLAENNEGYQSLIRLTTRAQEKSSSFG- 111

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
              +    L +  + G+I ++  + G + +  +      A +     + +FG + +++ LQ
Sbjct: 112  PYVTYEEL-QANSNGVIAISPFAEGLVQQYIYDKQDASALQHFEWLQSIFGKENVFLELQ 170

Query: 188  RHRGYDRYRESQVVQLA-----YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
             H   +     +++ ++         + ++A+N+  F  +E ++AH  + ++     + +
Sbjct: 171  NHWRQEER--EKLLAISNWLKGKEDAIRVIASNHIHFTHKEQHDAHRAIQSIRLGIKLDE 228

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                  + ++YLK+  EM  +F    EA  NT+ +A +C+  +++   ILP F       
Sbjct: 229  LPHDYSSSEYYLKSIDEMHHLFKKDGEASRNTLRVADKCNVKIELGNMILPHFPLPN--- 285

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             +      LR     G++ R           +++  +RLD+EL VI+ MK+  YFLIVAD
Sbjct: 286  -ETTATEYLRELCYKGIQERYEN-------PSEETWKRLDYELEVISEMKYEDYFLIVAD 337

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            F+++A +  I  GPGRGS AGS+ AY L IT++DP+++ L+FERFLN +R+SMPD DIDF
Sbjct: 338  FMRYAHEKKILTGPGRGSSAGSIVAYVLKITNVDPMKYGLIFERFLNRERISMPDIDIDF 397

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RRDEVIRYV+ KYG   VAQIITFG+L AKAA+RDVGR L +    +D++ K IP+ 
Sbjct: 398  PDNRRDEVIRYVKEKYGRTHVAQIITFGTLAAKAAIRDVGRVLGIELPIIDKISKSIPSR 457

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +    + + +  +    ++  V  L  I++++EGL RH+S HAAGIV+   PL+ +
Sbjct: 458  PNITLENA-LKESTVLQGMIESEEKVAELFTIAKEVEGLPRHSSIHAAGIVMSKEPLTNV 516

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601
            VP+      ++ +TQF M  IE  GL+K DFLGL+ L+ +++ L  +  Q+ + ++L+ I
Sbjct: 517  VPLQ-IGNDEMYLTQFPMGDIEDIGLLKMDFLGLRNLSFIEQILKLIHNQQHIDIELNNI 575

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            PF D  T+ LL    T G+FQLES+GMR  L+ ++P   EDI+A+ +LYRPGP++NI VY
Sbjct: 576  PFHDVNTFTLLGKGQTSGVFQLESTGMRSVLKRLKPTEFEDIVAVNALYRPGPMENIPVY 635

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R + +EK+   HP ++ +L  T GV+IYQEQ+MQIA  ++G+SL EAD+LRRA+GKK 
Sbjct: 636  IRRLHKEEKVTYPHPSLEEILSPTYGVLIYQEQIMQIASKMAGFSLGEADILRRAVGKKK 695

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            ++ +++Q+++F+ G+   G  +  A  ++ L+ +FADYGF +SHA AY++I+Y  A++K 
Sbjct: 696  RDVLEEQRQKFVQGSISKGYDEKEANEMYNLILRFADYGFPRSHAVAYSIIAYYLAYLKA 755

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +Y +EF+ A M   + + +K+ ++  +AR+  +++ PPS+      F + +  I+  L A
Sbjct: 756  NYQLEFMTALMGSVIHHHDKLGEYITEARRSGMKVHPPSIQQSEAQFSIKNKDIWIGLHA 815

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IK VG    + I+E  A   FDSL D C+R+ ++ L +R L++L+ AGALDC    R QL
Sbjct: 816  IKNVGVQAVQAILEERAKSDFDSLFDLCARIPTRLLPKRALDALIVAGALDCIHDDRAQL 875

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L S+D+  +Y + + +   N    +F  E      +         +S  R   E++VLGF
Sbjct: 876  LASVDDAIEYGEKLREQEKNAQTELFIEE----VKQPEYMSVPPLSSKDRLNFEKQVLGF 931

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y SGHP++    ++   G     +  A  + + +R+A M+   +  KT+KG ++ +   S
Sbjct: 932  YASGHPIESELALVESFGRLSVID--AKEKKSTLRIAGMIEDVKVIKTKKGDQMAFAQLS 989

Query: 1022 EPAKEYEANFFP 1033
            +   E +  FFP
Sbjct: 990  DETGEIDLTFFP 1001


>gi|160898940|ref|YP_001564522.1| DNA polymerase III subunit alpha [Delftia acidovorans SPH-1]
 gi|160364524|gb|ABX36137.1| DNA polymerase III, alpha subunit [Delftia acidovorans SPH-1]
          Length = 1194

 Score =  715 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1058 (38%), Positives = 589/1058 (55%), Gaps = 58/1058 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   +N I+   A D Q A+A+TD NNLF  ++F ++  A G++P+
Sbjct: 19   FVHLRLHTEFSVVDGTNRINAIVKAAAEDGQVALAVTDFNNLFGGVKFYREGRAKGVKPV 78

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ I+ ++   ++            I++LV +  GY  L EL++R +  +  K    
Sbjct: 79   LGAEIQIEGENGAAVS-----------RIIVLVQSPLGYHNLSELLARGWTRNVVKGQAV 127

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
               +WLQE+G EGLI+L G  +GP+ +A        A         +F  R ++ LQR  
Sbjct: 128  HTWAWLQELG-EGLIVLAGAQAGPVGQALMRGDEAGAAAVAQRLASMFPHRFFIELQRAG 186

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRV 248
            R  D       VQLA    LP+VAT+   F   +DYEAH+  + +A   +++   R  R 
Sbjct: 187  RPDDEAHVLAAVQLADRLNLPVVATHPIQFFGPDDYEAHEARVCIAEGEILANPKRVRRF 246

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T D + K  ++M ++F+D+P A+ NTVEIARRCS  L +  P LP F   +        +
Sbjct: 247  TRDQHFKTAAQMQALFADIPSAIANTVEIARRCSLTLVLGKPQLPNFPVPDGM----TMD 302

Query: 309  NELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R+++  GLE     L      +      Y +RL+FE+  I +M F GYFLIV DFI+
Sbjct: 303  EFFRSESFNGLEDRLTHLYPDPAKREAQRPRYVERLEFEIGTILKMGFPGYFLIVGDFIK 362

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N  PVGPGRGSGAGS+ AY L ITD+DPL ++LLFERFLNP+R+SMPDFD+DFCQ 
Sbjct: 363  WAKLNGCPVGPGRGSGAGSLVAYVLKITDLDPLEYNLLFERFLNPERVSMPDFDVDFCQA 422

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV+  YG + V+QI TFG++ A+AA+RDVGR L M Y+  D + KLIPN P  
Sbjct: 423  NRDRVIDYVKQLYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGL 482

Query: 486  PVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             V+                AI  +    E    +  V  L+E++QKLEG+ R+   HA G
Sbjct: 483  HVTLKYPPNPKKEGDKYTYAIEAEPMLAERIEKEEDVKTLIEMAQKLEGMTRNIGMHAGG 542

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI    L+   P+Y+   SD  V  ++   +E  GL+KFDFLGL TLT+L+ + +F+ +
Sbjct: 543  VVIAPGKLADFCPLYQQPGSDSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIIK 602

Query: 592  RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R           IP DD  TY L +   T  +FQ ES GM+  L   +P  +ED+IAL +
Sbjct: 603  RHKGQENFAFENIPLDDARTYQLFSEGKTEAVFQFESRGMQGMLRDAKPSRLEDLIALNA 662

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RK+GKE +   HPL++ +L ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 663  LYRPGPMDLIPSFVARKHGKEVVEYPHPLVEQVLAETYGIMVYQEQVMQTAQVLGGYSLG 722

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM   +  F  GA+K GIS+  A  +F+L+ KFA YGFNKSHAAA
Sbjct: 723  GADLLRRAMGKKKVEEMVMHRGIFREGAAKQGISEEKADEVFDLMEKFAGYGFNKSHAAA 782

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y++++Y TAW+K HY  EF   +MT+EMDN +K+K   +DA +  I   PP VN     F
Sbjct: 783  YSLLAYHTAWLKVHYTAEFYCGNMTVEMDNTDKLKVLYEDALKMGISFEPPDVNRGMYRF 842

Query: 829  K-VGDNRIYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKKL 877
            + V D  I Y L AIKG G      I+ A              PF SL DFC RVD  +L
Sbjct: 843  EPVTDKVIRYGLGAIKGTGQQAIEAIVAAREGRGVGPRGADKGPFKSLADFCVRVDRTRL 902

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGT 933
            N+R LE+L+  GA D    +R  L+ S+D+  ++      N       +F        G+
Sbjct: 903  NKRTLEALIKGGAFDAIELNRASLVASIDHAFEFGNKTLAN--ANQGGLFDMMGDDAVGS 960

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
             + +  L +        R   E+  +GFY SGH  D  +  +R+       E   +    
Sbjct: 961  STQEPPLVEALPWGVKERLTQEKTAVGFYLSGHLFDEVEKEVRRFVRTPLAELRDSREPQ 1020

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
               LA ++   +    ++G R+G     + +   EA+ 
Sbjct: 1021 --TLAGIISDFRAINGQRG-RLGLFKIDDGSGVIEASV 1055


>gi|294084089|ref|YP_003550847.1| DNA polymerase III subunit alpha [Candidatus Puniceispirillum marinum
            IMCC1322]
 gi|292663662|gb|ADE38763.1| DNA polymerase III, alpha subunit [Candidatus Puniceispirillum
            marinum IMCC1322]
          Length = 1153

 Score =  715 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 485/1051 (46%), Positives = 663/1051 (63%), Gaps = 40/1051 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL++H++YSL E  L + N+   ++ D QPA AITDTNN+F ALEFS+    
Sbjct: 1    MPTN--FVHLRLHTAYSLAESTLRIKNLARLVSEDAQPAAAITDTNNMFGALEFSKAMVN 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPI+G QL+I                     +VLL     GY  L  L+S   L  +
Sbjct: 59   VGVQPIMGAQLNITDS-------------QGTGEVVLLAQNETGYVNLSHLLSDALLNSE 105

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGG-SSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
               +       L    +EGLI+L+GG   G +          +A+ RL     +   R+Y
Sbjct: 106  ANANPHCNFDALAAR-SEGLILLSGGVMDGFVGLPASDGRQSLAKSRLQALNTIMQGRVY 164

Query: 184  VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + LQRH  G ++  E  +V LA   +LPLVATN+  F S +    HD L+ +     VS+
Sbjct: 165  IELQRHGLGAEQVAEPILVALADNLDLPLVATNDCRFDSPKMAGPHDALICIGTGRKVSE 224

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP----ILPRFIEK 298
            ++R + +P+HY K+  +M  +F D+PEA+ NTV IA+RCS++    AP            
Sbjct: 225  ENRIKYSPNHYFKSGKQMTDLFVDIPEAIANTVTIAKRCSYMSPERAPILPAFTAGTDVT 284

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E   + ++ E+ L ++ +          A AK   A+ Y+ RL FEL VI +M F GYFL
Sbjct: 285  EDVALARQAEDGLAHR-LERYVYSDDMDAAAKADIAKPYQDRLAFELGVINQMGFPGYFL 343

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVADFIQWAK   IPVGPGRGSGAGSV A+AL+ITD+DPLR+ LLFERFLNP+R+SMPDF
Sbjct: 344  IVADFIQWAKNAAIPVGPGRGSGAGSVVAWALSITDLDPLRWGLLFERFLNPERVSMPDF 403

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFCQDRRDEVI YVQ KYG +RVAQIITFGSLQA+AALRDVGR L+MPY QVDR+ KL
Sbjct: 404  DIDFCQDRRDEVITYVQEKYGKDRVAQIITFGSLQARAALRDVGRVLEMPYGQVDRIAKL 463

Query: 479  IPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            IPN+PA+P ++   +  ++  R  R  D  V  L+++S  LEGLYRHASTHAAG+VIGDR
Sbjct: 464  IPNNPANPTTIAQALESEADLRAERNQDEQVADLIDMSLSLEGLYRHASTHAAGLVIGDR 523

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            PL+ LVP+YRD RSD+PVTQFNMKW+E+AGL+KFDFLGLKTLT+LQ++++F+AQRG++++
Sbjct: 524  PLADLVPLYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLQRAVEFIAQRGIEIN 583

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  IP DD +T+ +L+   T+G+FQLES+GMR  L G++PD  EDIIA+V+LYRPGP++N
Sbjct: 584  LDAIPLDDIKTFEMLSAGDTVGVFQLESAGMRDVLRGLKPDRFEDIIAVVALYRPGPMEN 643

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y  RK+   +I  +HP ++P+L ET G++IYQEQV Q AQ+L+GY+L  AD+LRRAM
Sbjct: 644  IPDYVARKHDPSQITYMHPDLEPVLNETYGIMIYQEQVQQAAQVLAGYTLGAADILRRAM 703

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKKIK EMD Q+  F++GA  N IS+ +A +IF+ +A FA YGFNKSHAAAYA++SYQTA
Sbjct: 704  GKKIKAEMDAQRATFVNGAVDNAISEKLASDIFDTIAAFAGYGFNKSHAAAYALVSYQTA 763

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN---- 833
            ++K +YPVEFLAASM L+  N EK+  F Q+ +Q  I I PP VN     F+V  +    
Sbjct: 764  YLKANYPVEFLAASMALDAGNTEKLAVFRQECQQKGITIKPPCVNHSFAGFRVEPDNNHP 823

Query: 834  -------RIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESL 885
                    I Y+L AIK VG      + E       F+ L DF  R+     NRR +E+L
Sbjct: 824  ESDNDKLAIRYALGAIKNVGAEAMARLTEKRDAGSKFEHLMDFLERLPRDASNRRQMENL 883

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            V AGALDC   +R +LL ++D +  +A+ + +++ +   N+F  +  + +  + L     
Sbjct: 884  VRAGALDCLHANRHELLNNIDYLLAHAETLRRDKESNQNNLFGDDTDSMASSLRLTPCED 943

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT----IRGNNIRLAAMV 1001
                 R + E   LG Y S HPLD Y   L K+ I    E             + LA  +
Sbjct: 944  WVPMDRLKEEFDALGLYLSAHPLDGYGNQLAKLRIITASELNRQIEAGRPPQRVNLAGSI 1003

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              KQ + +++G++  +V F++    +E  FF
Sbjct: 1004 TGKQVRVSQRGNKFAFVQFTDQTGVFETTFF 1034


>gi|281423616|ref|ZP_06254529.1| DNA polymerase III, alpha subunit [Prevotella oris F0302]
 gi|281402168|gb|EFB32999.1| DNA polymerase III, alpha subunit [Prevotella oris F0302]
          Length = 1235

 Score =  715 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1116 (31%), Positives = 545/1116 (48%), Gaps = 103/1116 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62
             F+HL VH+ YS+L+G   ++N+++K   +    +AITD   +F   EF+          
Sbjct: 3    DFIHLHVHTYYSVLDGQSKISNLVNKAVENGMKGMAITDHGVMFGIKEFADYCAGVNKKR 62

Query: 63   CAAGI---QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
             A G+   +PI+GC++ +          +      +   +++L     GY+ LI+LVS+ 
Sbjct: 63   KADGLEPFKPILGCEMYVARHRLQDKVKEHG--DNSGYHLIVLAKNYNGYKNLIKLVSKS 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            ++ +      R     L++   E LI+ +   +G +      +  + A +    + ++FG
Sbjct: 121  WM-EGYYYRPRTDRVELEKYH-EDLIVCSACIAGEVPSKIIKDDLEGAREACEWYHRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     +++ A  + + ++ TN+  F  +E  E
Sbjct: 179  DDYYLELQRHEVKDPTILANREAFPLQQKANKVLLEFAKEYGIKVICTNDVHFEDKETAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++    +   +R R +   + K R EM  IFSD+PEAL NT+EI  +      
Sbjct: 239  AHDHLLCLSTGKDLDDPNRMRYSKQEWFKTREEMNDIFSDVPEALSNTLEIFDKVELYSI 298

Query: 287  VHAPILPRFIEKECDDIQKE---------------------------------------- 306
             H PI+P F   E    ++                                         
Sbjct: 299  EHGPIMPFFPIPESFGTEEGWRKKFTEADLYREFTSDENGENPLSQEEGQKVIDRLGGYD 358

Query: 307  -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E + L   A  G +               + R+ ++FEL+V+  M F GYFLI
Sbjct: 359  KIYRIKFEADYLAKLAYDGAKRLYGDPV------PDNVREHINFELHVMKTMGFPGYFLI 412

Query: 360  VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V DFI  A+ +  + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD 
Sbjct: 413  VQDFINAARTDLGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R +V+R+V +KYGHE  A IIT+ S+  K +++DV R  ++P  + + LCK 
Sbjct: 473  DTDFDDDGRGKVLRWVMDKYGHENCAHIITYASMATKNSIKDVARVERLPLDKSNFLCKA 532

Query: 479  IPNDPAHPVSLQ---AIADDSRFREA-RLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP+     + +    AI      REA    DP     ++ ++ LEG  R    HA G +I
Sbjct: 533  IPDRLPDGLKMNLTNAIKCTPELREAEVSQDPRERNTIKYAKMLEGTVRGTGIHACGFII 592

Query: 535  GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               P+S  VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ L+++   +
Sbjct: 593  CRDPISNWVPVSTADDPDFPGLKTAVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVV 652

Query: 590  AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             +     +DL  IP DD  TY L     T+G FQ ES GM++ L  + P   ED+IA+ +
Sbjct: 653  KKTVGDDIDLDNIPIDDELTYQLYQQGRTIGTFQFESPGMQKYLRELHPTVFEDLIAMNA 712

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RKN    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  
Sbjct: 713  LYRPGPMDYIPDFIKRKNDPTLVTYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E+D LR+AMGKK K  +D  K +FI    +NG    +   I+    KFA Y FNKSHA  
Sbjct: 773  ESDALRKAMGKKKKAIVDAMKPKFIKQGQENGHDPKVLEKIWGDWEKFASYAFNKSHATC 832

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ ++YQTA+MK HYP E++AA MT     + +I K  ++ +   I  + P VN    +F
Sbjct: 833  YSWVAYQTAYMKAHYPAEYMAALMTRRFSQITEITKLMEECQSMKIATLGPDVNESYSEF 892

Query: 829  KVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V     I + L+AIKG+G T A  I++    + P+  + DF  RVD   +NR+  ESL 
Sbjct: 893  GVNKKGEIRFGLSAIKGMGETAALSIVKERETNGPYKDIYDFAERVDYGCVNRKAFESLA 952

Query: 887  FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
             +G  D F + R Q   +       LD + +Y Q  ++ +     ++F  E      +  
Sbjct: 953  LSGGFDGFEFRREQYFAAGMKGDVFLDTLVRYGQLYQQEQREAKNSLFGGESAVEISRPV 1012

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIR 996
                   ++  R   E+ ++G Y S HPLD Y  IL+ M      E        +   I 
Sbjct: 1013 PGNAEDWSTIERLNRERDLVGIYLSAHPLDEYGVILKSMCNTHCVEIDKKEELAKKEEIS 1072

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  +V   + K T+ G   G+VT  +     E  FF
Sbjct: 1073 IGGIVTGVKSKFTKNGKPCGFVTLEDFEGSGELAFF 1108


>gi|313204257|ref|YP_004042914.1| DNA polymerase iii, alpha subunit [Paludibacter propionicigenes WB4]
 gi|312443573|gb|ADQ79929.1| DNA polymerase III, alpha subunit [Paludibacter propionicigenes WB4]
          Length = 1265

 Score =  715 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1125 (33%), Positives = 584/1125 (51%), Gaps = 107/1125 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66
            SFVHL VHS YS+L+G  +++ ++DK +     A+A+TD  N+F   EF   A       
Sbjct: 3    SFVHLHVHSHYSVLDGMSTISGLVDKASKSGMHAVALTDHGNMFGVKEFFNYAKKKNGKV 62

Query: 67   -----------------------------------IQPIIGCQLDIDMQDNLKMTNQGKT 91
                                                +PIIGC+  +  +  L       T
Sbjct: 63   KGQIADLQKQLKAEGLTEEEKTSILEQIEEAKHKIFKPIIGCEAYVARRGRLSKE---GT 119

Query: 92   PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS 151
               +   +VLL    +GYQ L +LVS  ++ +      RI    L++  +EGLI  +   
Sbjct: 120  EDRSGYHLVLLAKNKKGYQNLCKLVSMSWI-EGMYYRPRIDHDILEKY-SEGLIASSACL 177

Query: 152  SGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY---------DRYR--ESQV 200
             G I +     +   AEK ++ +KK+FGD  Y+ LQRH+           D+      ++
Sbjct: 178  GGEIHKKVESGNMDEAEKSVMWYKKVFGDDFYIELQRHKTDKPNADYSTFDKQMRQNEEL 237

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
            ++LA      +VATN+  F+ EE  EAH+ L+ ++    +   +R R T   +LK+  +M
Sbjct: 238  IKLARKTNTKIVATNDVHFVEEEHGEAHERLICLSTGKDLDDPNRMRYTKQEWLKSPEQM 297

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ-----KEEENELRNKA 315
              IF+D+PEAL NT+EIA +  F       ++P F   E    +     K  E  LR++ 
Sbjct: 298  WQIFADIPEALNNTLEIAEKVEFFDIDSNAMMPVFPIPESFGTEEQYRAKFSEEMLRSEF 357

Query: 316  VAGLEVRLAQGAIAKGYHAQDY---------------------RQRLDFELNVIARMKFS 354
              G +         +     DY                     ++R+DFEL V+  M F 
Sbjct: 358  GEGFDRLGGYEKAVRVKLEADYLTKLAYEGAAVRYGSELTADQKERIDFELEVMKTMGFP 417

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV DFI+ A+   + VGPGRGS AGSV AY L ITDIDPL++ LLFERFLNPDR+S
Sbjct: 418  GYFLIVQDFIRAARDMKVSVGPGRGSAAGSVVAYCLRITDIDPLKYDLLFERFLNPDRIS 477

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPD DIDF  D R +V+R+V  KYG ERVA IIT+G++  K++++DV R  ++P S+ DR
Sbjct: 478  MPDIDIDFDDDGRGQVLRWVTEKYGKERVAHIITYGTMATKSSIKDVARVQRLPLSEADR 537

Query: 475  LCKLIPNDP--------AHPVSLQAIADDSRFREARLADP-SVDRLLEISQKLEGLYRHA 525
            L KLIP+                  +      + AR +   ++   L  ++ LEG  R  
Sbjct: 538  LTKLIPDKFPEGADGKAPKITISNCLKYVPEMQTARNSSDLNLANTLRYAEMLEGTVRQT 597

Query: 526  STHAAGIVIGDRPLSQLVPMYRDV----RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
              HA G++IG   L+ LVP+   +      ++ VTQ+    IE+ GLIK DFLGLKTL++
Sbjct: 598  GVHACGVIIGADDLTNLVPLSTAMDKETNEEMLVTQYEGSVIEEIGLIKMDFLGLKTLSI 657

Query: 582  LQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            ++++L  + + +G+ +D+  IP DD +TY L +   T+G FQ ES+GM++ L  +QP   
Sbjct: 658  IKEALSNIKKSKGIDLDIDSIPIDDCKTYELFSKGLTVGTFQFESAGMQKHLINLQPTQF 717

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            ED+IA+ +LYRPGP+  I  + NRK+G+EKI    P+++  LK+T G+ +YQEQVM +++
Sbjct: 718  EDLIAMNALYRPGPMQYIPQFVNRKHGREKIEYPFPIMENRLKDTYGITVYQEQVMLLSR 777

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI-SKTIAVNIFELLAKFADY 759
             L+G++  ++D LR+AMGKK+ ++M+  K +F+ G  KNG   K     I+   A+FA Y
Sbjct: 778  DLAGFTRGQSDELRKAMGKKLIDKMEALKVKFMDGCEKNGFGPKAKLEQIWSDWAEFAKY 837

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSHA  Y+ I+YQTA++K HYP EF+AA++T   D++ ++ KF  + +   + ++ P
Sbjct: 838  AFNKSHATCYSWIAYQTAYLKAHYPAEFMAANLTRNKDDITEVGKFMDECKNLGMNVLGP 897

Query: 820  SVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKL 877
             VN   + F V  D  + + L AIKGVG      I+    A+  + S+ +   RV+    
Sbjct: 898  DVNESDLTFTVNADGNVRFGLGAIKGVGEGAVEAIVNERNANGKYTSMFNLIERVNLTAC 957

Query: 878  NRRVLESLVFAGALDCF-GYSRMQLL-------QSLDNIQKYAQWVEKNRTNKHENIFAH 929
            N+R +ESL  +GA D F    R QL        Q L++I +Y    + +      ++F  
Sbjct: 958  NKRAMESLALSGAFDSFSDVHREQLFVENSKGEQVLESILRYGNKYQTDLAMTKNSLFGG 1017

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
                   K  +      +   +   E+ ++G Y S HPLD Y+  +  +      +    
Sbjct: 1018 LDSVEITKPEIPYAPEWSPLEKLNKERDLIGMYLSAHPLDEYEFEINHICNATTVDLKDL 1077

Query: 990  --IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++G  +++  MV + +   ++ G+  G  T  + A  +E   F
Sbjct: 1078 SSLQGKGLKIGGMVTNFRHGTSKAGNPYGIFTLEDYAGAFEFALF 1122


>gi|224538019|ref|ZP_03678558.1| hypothetical protein BACCELL_02908 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224520366|gb|EEF89471.1| hypothetical protein BACCELL_02908 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1264

 Score =  715 bits (1844), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/1140 (31%), Positives = 574/1140 (50%), Gaps = 122/1140 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF----------- 58
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF           
Sbjct: 3    DFVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNGGP 62

Query: 59   --------------------------------SQKACAAG--IQPIIGCQLDIDMQDNLK 84
                                            ++ A A     +PIIGC++ +       
Sbjct: 63   KGEIKDLKKRIAGIESGEIACEDKDAELADCRAKLAEAENKLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVSR +  +      R   + L++   EGL
Sbjct: 120  MDKKEGKPDQSGWHLIVLAKNEKGYHNLIKLVSRAWT-EGYYMRPRTDRNELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +    +  + AE+ +  +K LFG+  Y+ LQRH+              
Sbjct: 178  IVCSACIGGEVPKKILNDQLEDAEEAVRWYKNLFGEDYYLELQRHKATVPRANHEAYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +   +++++ A  + + L+ +N+  F++EE  EAHD L+ ++    +    R   T   +
Sbjct: 238  QRANAKLIEFAKKYNIKLICSNDVHFVNEEHAEAHDRLICLSTGKDLDDPKRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK-------- 305
            +K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    ++        
Sbjct: 298  MKTKAEMNELFADIPEALSNTLEILNKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 357

Query: 306  ------------------EEENELRNKAVAGLEVRLAQGAIAK---------------GY 332
                              EE  + + K + G E        A                  
Sbjct: 358  KDLFDEFTQDENGNVVLSEEAAKAKIKRLGGYEKLYRIKLEADYLAKLTFDGAKIFYGDP 417

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
             +++  +RL FEL ++  M F GYFLIV DFI   +   + VGPGRGS AGS  AY L I
Sbjct: 418  LSEEVMERLKFELYIMKTMGFPGYFLIVQDFIAAGRNMGVSVGPGRGSAAGSAVAYCLQI 477

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T IDP+++ LLFERFLNPDR+S+PD DIDF  D R EV+R+V  KYG E+VA IIT+G++
Sbjct: 478  TKIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTQKYGQEKVAHIITYGTM 537

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL-ADPSVD 509
              K A++DV R  ++P S+ DRL KL+P+           AI      + A    DP V 
Sbjct: 538  ATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIDYVPELQAAEASPDPLVR 597

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEK 565
              L+ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+    IE 
Sbjct: 598  DTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIED 657

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             GLIK DFLGLKTL++++++++ +   R +++++  +P DD  TY L +   T+G FQ E
Sbjct: 658  TGLIKMDFLGLKTLSIIKEAVENIRLHRKLELNIDKVPIDDPATYKLYSDGRTIGTFQFE 717

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            S+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK+
Sbjct: 718  SAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLKD 777

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  KNG    
Sbjct: 778  TYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDPK 837

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I K
Sbjct: 838  VLEKIWGDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSNITDITK 897

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862
               + +   I+++ P VN   + F V  +  I + L A+KGVG     +IME    + PF
Sbjct: 898  LMDECKAMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVLNIMEEREKNGPF 957

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQW 914
              + DF  RV+    N++ LE L  AG  D F    R Q           ++ + +Y   
Sbjct: 958  KGIFDFVQRVNLTACNKKNLECLALAGGFDEFPELKREQYFAVNSKNEVFMETLVRYGNR 1017

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
             + ++     ++F  E         + +    +   R   E+ ++G Y S HPLD Y  +
Sbjct: 1018 YQADQAAAANSLFGGENVVDIATPEIPEAERWSDLDRLNRERDLVGIYLSAHPLDEYSVV 1077

Query: 975  LRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            L+ +      E    A + G  I +  +V S ++  ++ G+  G     + +   E  FF
Sbjct: 1078 LQHVCNTRMAELEDKAALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAELPFF 1137


>gi|134102263|ref|YP_001107924.1| DNA polymerase III subunit alpha [Saccharopolyspora erythraea NRRL
            2338]
 gi|291003774|ref|ZP_06561747.1| DNA polymerase III subunit alpha [Saccharopolyspora erythraea NRRL
            2338]
 gi|133914886|emb|CAM04999.1| DNA polymerase III alpha subunit [Saccharopolyspora erythraea NRRL
            2338]
          Length = 1194

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/1076 (31%), Positives = 528/1076 (49%), Gaps = 57/1076 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FVHL VH+ YS+L+GA  +  +  +    + PA+ +TD  N+F A EF Q+A  
Sbjct: 1    MPVDP-FVHLHVHTEYSMLDGAAKVGALFAEAQRLEMPAVGMTDHGNMFGADEFYQQAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVLLVSTAE 107
             GI+PIIG +  +                              +       + +L   A 
Sbjct: 60   TGIKPIIGIEAYLAPGSRFHKKPVFWGEAKQRGTDEYGEGGDVSGAGAYTHMTMLARNAT 119

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            G + L  L SR  +  Q  +  R+    + E   EG+I  TG  SG +           A
Sbjct: 120  GLRNLFTLSSRASMEGQ-YRKPRMDRELVAEY-AEGIIATTGCPSGEVQTRLRLRQFDEA 177

Query: 168  EKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
             +    +K +FG +  ++ L  H    +R     ++++A    L  VATN+S +++ +  
Sbjct: 178  MQAASDYKDIFGAENFFLELMDHGLPIERSVREGLLKIAKELGLKPVATNDSHYVTADQA 237

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            E+H  L+ V     ++ + R +   D Y    +  +  + D          +        
Sbjct: 238  ESHGALLCVQSGKTLNDESRFKFDGDGYYLKSAAEMREYWDKEVPGAADNTLLIAERVES 297

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                      + +  D   K E   L  +    L  R  +GA       Q+   R+  EL
Sbjct: 298  YEDVWSFQDRMPRVTDGSGKTERQLLEAEVEQYLPTRYPEGA------TQECLDRIKVEL 351

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            +V+    +  YFL+V D  +WAK   I VGPGRGS AGS+ AY L IT++DPL   L+FE
Sbjct: 352  DVLDTKGYCAYFLVVGDLTRWAKSQGIHVGPGRGSAAGSLLAYILHITNLDPLEHGLIFE 411

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R S PD D+DF   RRDEV++Y  +KYG ++VAQ+ITFG ++ KAA++D  R  
Sbjct: 412  RFLNPERDSPPDIDLDFDDRRRDEVLQYAIDKYGRDKVAQVITFGKIKTKAAIKDSARVH 471

Query: 466  Q--MPYSQVDRLCKLIPNDPAHPVS---------LQAIADDSRFREARLADPSVDRLLEI 514
                 ++  D++ K +P   A              +  A+ +  R     DPSV ++ + 
Sbjct: 472  HGQPGFAIADKISKALPPPIAAKDIPLSGIVDPQHERYAEAAEVRNLIETDPSVSQIFDT 531

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            ++ LEGL R+A  HA  +++  +PL   VP+         +T ++    E  GL+K DFL
Sbjct: 532  ARGLEGLIRNAGVHACAVILSSQPLMGTVPL-WARDDGSIITGWDYPSCEAIGLLKMDFL 590

Query: 575  GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL  LT+L  +L  +      ++DLS +  DD +TY LL    +LG+FQLE  GMR+ L+
Sbjct: 591  GLSNLTILGDALKMVKANHDREIDLSNLGLDDAKTYELLARGESLGVFQLEGGGMRELLK 650

Query: 634  GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQG 687
             MQP    DI+A  +LYRPGP+  +    Y +RKNGK+ +  IHP +D  LK+    T G
Sbjct: 651  RMQPTEFADIVACNALYRPGPMEVNAHNDYADRKNGKKPVEPIHPDLDEPLKDILSETYG 710

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQ+M IAQ ++GYSL  AD+LRRAMGKK KE +D++ E F +G  + G       
Sbjct: 711  LIVYQEQIMAIAQKVAGYSLGRADILRRAMGKKKKEVLDQEFEGFQAGMREQGFRDEAID 770

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++  +  FA Y FNKSHAA YA+++Y TA++K +YP E++AA +T   DN +K+  +  
Sbjct: 771  KLWATVLPFAGYAFNKSHAAGYALVAYWTAYLKANYPAEYMAALLTSNGDNKDKMAVYLA 830

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLE 866
            + R+  ++++ P VN    DF    + I + L+A++ VG+     I +   D   + S  
Sbjct: 831  ECRRMGVKVLSPDVNDSLNDFTAVGSDIRFGLSAVRNVGSNVVASIAKVREDKGRYSSFT 890

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF  + ++   N+RV+ESL+ AGA D  G++RM L Q  +        +++ +     ++
Sbjct: 891  DFLDKSETVACNKRVIESLIKAGAFDSLGHTRMSLAQHHEAAVDAVIGLKRQQALGQFDL 950

Query: 927  FAHEKGTFSDKITLE------KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
            F        ++ +                     E+ +LG Y S HPLD  + +L     
Sbjct: 951  FGGGDDAGGEESSSPLAHLQFTPDEWPRKQMLSYEREMLGLYVSAHPLDGAERLLAPYQD 1010

Query: 981  KGYEESVATIR---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G  E V   R    + +++A M+   Q++  + G     VT  +     E  FFP
Sbjct: 1011 TGIAELVGGEREAGKDQVKIAGMISGIQRRINKNGHPWAIVTLEDLDASVEVLFFP 1066


>gi|41407355|ref|NP_960191.1| DNA polymerase III subunit alpha [Mycobacterium avium subsp.
            paratuberculosis K-10]
 gi|41395707|gb|AAS03574.1| DnaE1 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 1177

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/1063 (30%), Positives = 520/1063 (48%), Gaps = 42/1063 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S SFVHL  H+ YS+L+GA  +  +L ++     PA+ +TD  N+F A EF   A  
Sbjct: 1    MNHS-SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNAATK 59

Query: 65   AGIQPIIGCQLDIDMQDNLK----------MTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AGI+PIIG +  I                       +   +   + ++   A G + L +
Sbjct: 60   AGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMVAENAAGLRNLFK 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   +G+I  TG  SG +         + A +    +
Sbjct: 120  LSSLASFEGQLGKWSRMDAELIAE-HADGIIATTGCPSGEVQTRLRLGQDREALESAAKW 178

Query: 175  KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +++FG D  ++ L  H    ++     ++++     +P +ATN+  +++ +    H+ L+
Sbjct: 179  REIFGADNFFLELMDHGLSIEQRVRDGLLEIGRKLNIPPLATNDCHYITRDAAHNHEALL 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             V     +S  +R +   D Y    +  +    D          +               
Sbjct: 239  CVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDAEVPGACDSTLLIAERVQSYAEVWTP 298

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
               +         ++ + L ++ +AGL  R   G        QDY  R ++E+ VI    
Sbjct: 299  RDRMPVFPVPEGHDQASWLHHEVMAGLRRRFPDGV------GQDYIDRAEYEIKVICDKG 352

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F  YFLIVAD I +A+  +I VGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R
Sbjct: 353  FPSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPER 412

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYS 470
             S PD DIDF   RR E++RY  +K+G +RVAQ+ITFG+++ KAAL+D  R    Q  ++
Sbjct: 413  PSAPDIDIDFDDRRRGEMVRYAADKWGSDRVAQVITFGTIKTKAALKDSARIHYGQPGFA 472

Query: 471  QVDRLCKL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
              DR+ K   P   A  +        S +   + +  R     DP V  + + ++ LEGL
Sbjct: 473  IADRITKALPPPIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGL 532

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+ LT+
Sbjct: 533  IRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTI 592

Query: 582  LQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +LD +   RG+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQP   
Sbjct: 593  IGDALDNIKANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEF 652

Query: 641  EDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQ 694
             DI+A+++LYRPGP+       Y +RKNG++ I  IHP ++      L ET G+I+YQEQ
Sbjct: 653  NDIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLREILAETYGLIVYQEQ 712

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            +M IAQ ++ Y++ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++ + 
Sbjct: 713  IMFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTIL 772

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  I
Sbjct: 773  PFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGI 832

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873
             ++PP VN   V+F      I + L A++ VG      +++       F    D+ +++D
Sbjct: 833  TVLPPDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIKTRNEKGKFTDFSDYLNKID 892

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
                N++V ESL+ AGA D   ++R  L     +        +K       ++F  + G 
Sbjct: 893  ISACNKKVTESLIKAGAFDSLKHARKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGDGGC 952

Query: 934  FSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATI 990
                 T++          +   E+ +LG Y SGHPL+    +L           +     
Sbjct: 953  TESVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTQIPAILDGDVP 1012

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                +R+  ++ S  ++  + G         +     E  FFP
Sbjct: 1013 NETQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1055


>gi|114776907|ref|ZP_01451950.1| hypothetical protein SPV1_11846 [Mariprofundus ferrooxydans PV-1]
 gi|114552993|gb|EAU55424.1| hypothetical protein SPV1_11846 [Mariprofundus ferrooxydans PV-1]
          Length = 1169

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1039 (39%), Positives = 611/1039 (58%), Gaps = 23/1039 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P F HL VHS +SLL   L + ++L K+A  +QPA+A+TD  NLF A+EF  KA  
Sbjct: 1    MRFAP-FAHLHVHSDFSLLGSTLKIGDLLHKVAELRQPAVALTDYGNLFGAIEFYSKAMR 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI+GC++ I      +++   +   P  P +VLL     G++ L++LVS  YL D 
Sbjct: 60   MGIKPIMGCEVFICEDHTKRISEGPR--GPRFPQLVLLARNNHGWKNLLKLVSISYL-DG 116

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LY 183
                 R+    L E   +GLI ++ G +G I++       + A K  + ++ +F +   +
Sbjct: 117  FYYKPRVGKPLLSE-HADGLIAISSGWNGEIEQHLQRGDIEGARKVAIAYRDMFHEGCFF 175

Query: 184  VNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +QR +          +++LA+  ++PLVA+NN+ FL  ED+EA   + A+  +  ++ 
Sbjct: 176  IEIQRQNGSGQEQINELLIELAHELDIPLVASNNAHFLEREDFEAFQAMQALQQNRTLND 235

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                  TP++YLK+  EM  +F D+PEALENTV IA RC+  LQ     LP F   E  +
Sbjct: 236  DVSGHFTPEYYLKSYEEMQELFEDIPEALENTVHIANRCNVDLQFGNYQLPDFQPPEDME 295

Query: 303  IQKEEENELRNKAVAG-LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            +       +R +++ G  +   A  A       + Y  RL FEL+VI  M F GYFLIV+
Sbjct: 296  LS----AYMRQQSMEGLDDRWPAILAGDPDAVRETYDARLAFELDVIENMGFPGYFLIVS 351

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK   IPVGPGRGSGAGS+ AY L ITD+DP+++ LLFERFLNP+R+SMPDFDID
Sbjct: 352  DFITWAKHQGIPVGPGRGSGAGSLVAYCLKITDLDPIKYGLLFERFLNPERVSMPDFDID 411

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC  RR+E IRYV +KYG ++VAQIITFGS++AKA +RDVGR L M  ++V+ + KL+PN
Sbjct: 412  FCMSRREEAIRYVTHKYGEDKVAQIITFGSMKAKAVIRDVGRVLPMELAKVNMIAKLVPN 471

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            D    +    + D+ +  +    D  V RL  ++++LEG +R+A  HAAG++IG R L  
Sbjct: 472  DLKMTLEKA-LVDEPKLAKMVKEDVEVARLFALAKRLEGSHRNAGKHAAGVIIGRRELVD 530

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKV 596
              P+++    +  V Q++M  +EK GLIKFDFLGLKTLT++  ++  + Q          
Sbjct: 531  TAPLFKVAGEEGKVVQWDMANVEKVGLIKFDFLGLKTLTVIDIAVKLVRQYESGDAAKHF 590

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ IP  D  T+ L+    T  +FQ+ESSGMR  L  ++PDC EDIIALV+LYRPGP++
Sbjct: 591  DITTIPMHDEATFQLMQRGQTGAVFQVESSGMRDLLTRLKPDCFEDIIALVALYRPGPLE 650

Query: 657  NIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +V  +   K+G++ I    P +  +L+ET GVI+YQEQVMQIAQLL+G+SL +AD+LR
Sbjct: 651  SGMVDTFIECKHGRQAIEYPLPQLKTILQETNGVILYQEQVMQIAQLLAGFSLGQADMLR 710

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM +Q++ F++GA K  +    A ++F+L+ KFA YGFNKSH+AAYA+ISY
Sbjct: 711  RAMGKKKAEEMAEQRKIFMAGAEKQKVDLDKAEHMFDLMEKFAGYGFNKSHSAAYALISY 770

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K HYP  F+AA+M+ +M N +K+     D R   I ++ P +N    +F+   + 
Sbjct: 771  QTAFLKAHYPRAFMAATMSCDMGNTDKLALLVTDCRNMGIDVLQPHINESDWEFRPEGDC 830

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y L  IKGVG    R +++    +  F S ED   R  ++ LN+R+LE+++ AGAL  
Sbjct: 831  IRYGLGGIKGVGEAALRAVIDERKTNGEFTSFEDMIMRAPARTLNKRILEAMIRAGALQG 890

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                +   L+ L  + +      K   +    +F   +   +D          +     +
Sbjct: 891  LIPHQRAALEGLGEVLENLSRKRKEFASNQSFLFTVAEPESADG-GFPTLPAWSPGESLQ 949

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ VLGFY +GHPL+ +      +G     E      G  I +   + S +Q +  +G+
Sbjct: 950  AEREVLGFYLTGHPLEAWLKRTTGLGDCNLSELKEREEGAEIVVPVGISSIRQYQGGRGT 1009

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + +V   +   + E   F
Sbjct: 1010 -MAFVQLEDLHGQAEMVCF 1027


>gi|329957519|ref|ZP_08297994.1| DNA polymerase III, alpha subunit [Bacteroides clarus YIT 12056]
 gi|328522396|gb|EGF49505.1| DNA polymerase III, alpha subunit [Bacteroides clarus YIT 12056]
          Length = 1265

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1141 (31%), Positives = 571/1141 (50%), Gaps = 123/1141 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNGGP 62

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC A I        +PIIGC++ +       
Sbjct: 63   KGEIKDLKKRIAGIESGEIACEDKEAEIAACKAKITEAENKLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L     GY  LI+LVSR + +       R   + L++   EGL
Sbjct: 120  MDKKEGKPDQSGYHLIVLAKNETGYHNLIKLVSRAWTMG-YYMRPRTDRNELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +    +  + AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 178  IVCSACIGGEVPKKIINDQLEEAEEAIRWYKNLFGDDYYLELQRHKATVPRANHEAYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +   +++++ A  + + ++ +N+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  QKANAKLLEYARKYNIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK-------- 305
            +K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    ++        
Sbjct: 298  MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 357

Query: 306  ------------------EEENELRNKAVAGLEVRLAQGAIAK---------------GY 332
                              EE  + + K + G E        A                  
Sbjct: 358  KDLFDEFTQDENGKVVLDEEAAKAKIKRLGGYEKLYRIKLEADYLAKLAFDGAKRIYGDP 417

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
             + + ++RL FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS  AY L 
Sbjct: 418  LSDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V  KYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL-ADPSV 508
            +  K A++DV R  ++P S+ DRL KL+P+           AIA     + A    DP V
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQAAEASPDPLV 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIE 564
               L+ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+    IE
Sbjct: 598  RDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   RG+ +D+  I  +D  TY L     T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENVRLHRGLALDIDKISINDPATYKLYCDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPGTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPIMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI+G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQKNGHDA 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + ++  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLSDITTIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861
            K   + +   I+++ P VN   + F V  +  I + L A+KGVG    + IME    + P
Sbjct: 898  KLMDECKSMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVQSIMEEREKNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            +  + DF  RV+    N++ LE L  AG  D F    R Q           ++ + +Y  
Sbjct: 958  YTGIFDFVQRVNLNACNKKNLECLALAGGFDSFPELKREQYFAVNAKNEVFIETLVRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
              + ++     ++F  E         +      +   R   E+ ++G Y S HPLD Y  
Sbjct: 1018 RYQADKAAAVNSLFGGENVVDIATPEILPAERWSDLDRLNKERDLVGIYLSAHPLDEYSV 1077

Query: 974  ILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +L  +      E      + G  I +  +V + ++  ++ G+  G     + +   E  F
Sbjct: 1078 VLEHVCNTHMAELEDKTLLVGREITMGGIVTTVRRGISKNGNPYGIAKIEDYSGSAELPF 1137

Query: 1032 F 1032
            F
Sbjct: 1138 F 1138


>gi|121998235|ref|YP_001003022.1| DNA polymerase III subunit alpha [Halorhodospira halophila SL1]
 gi|121589640|gb|ABM62220.1| DNA polymerase III, alpha subunit [Halorhodospira halophila SL1]
          Length = 1183

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/1070 (37%), Positives = 593/1070 (55%), Gaps = 58/1070 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E  P FVHL++HS +SL++G + +N  +        PA+AITD +NLF  ++F + A AA
Sbjct: 3    EDPPPFVHLRLHSEFSLVDGIVRINEAVSAAREAGMPAVAITDQSNLFGMVKFYRAALAA 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G++PIIG  + +             T       + LL     GY+ L  L+SR Y     
Sbjct: 63   GVKPIIGGDVWLADD----------TVEFGYARLTLLCRDRGGYRALSRLLSRAYREGAC 112

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYV 184
                 I   WL +    GL+ L+GG+ G I +A        A +     ++ FG+   Y+
Sbjct: 113  GDIPVIRREWL-QADAGGLLALSGGAQGDIGQALLRGDEATARRYAEEHRRTFGEDGFYL 171

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     D       V LA   +LP+VATN+  F+  EDY+AH+V + +     +   
Sbjct: 172  ELHRLGRPGDERHLHAAVALAADEDLPVVATNDVRFMRPEDYDAHEVRVCIHQGRTLDDP 231

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +RPR  T   Y  + ++M   FSDLPEALE +V IA RCS  L++    LP F   E   
Sbjct: 232  NRPRHYTEQQYFADAADMAERFSDLPEALETSVRIAERCSVDLELDTNYLPDFPVPEG-- 289

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFL 358
                  + LR ++  GL  RL Q  +A+   A +    Y +RLD EL VI +M F GYFL
Sbjct: 290  --HTVASFLRAESERGLTQRLEQRGLAEDEDADEVEATYHRRLDHELAVIEQMGFPGYFL 347

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVADFI+WA+ N+IPVGPGRGSGAGS+ AYAL IT++DPLR+ LLFERFLNP+R+SMPDF
Sbjct: 348  IVADFIRWARDNHIPVGPGRGSGAGSLVAYALGITNLDPLRYDLLFERFLNPERVSMPDF 407

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC +RRDEVI YV ++YG E+V+QI T G++ A+A +RDVGR     +  +DR+ KL
Sbjct: 408  DVDFCMERRDEVIEYVSDRYGAEKVSQIATHGTMAARAVVRDVGRVYGHAFGYMDRIAKL 467

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP +    +  +A+  +   R     D ++  L++ ++ LEG+ R+   HA G+VI    
Sbjct: 468  IPFEIGMTLD-KALEQEEDLRAEYDNDENIRELIDTARSLEGMARNVGKHAGGVVIAPTD 526

Query: 539  LSQLVPMYRDVRS------DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD----- 587
            L+   P+YRD             T F+   +E  GL+KFDFLGL+TLT++  ++      
Sbjct: 527  LTDFSPLYRDPEEREDAEAWKVATHFDKDDVEAVGLVKFDFLGLRTLTIIDWTVQAVNRI 586

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
               +    +D+  IP DD  T+ LL    T  +FQLES GM++ ++ +QPD  EDI+ALV
Sbjct: 587  LEQRGERALDIDGIPLDDSATFDLLKRCATTAVFQLESRGMKELIKRLQPDSFEDIVALV 646

Query: 648  SLYRPGPIDNIVVYNNRKNGKEK--------IVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            +L+RPGP+ + +V +  +    +            HP + P+L+ T GVI+YQEQV +IA
Sbjct: 647  ALFRPGPLQSGMVDDFVERKHGRSAVAGYPTRELHHPDLMPVLQPTYGVILYQEQVQRIA 706

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q+L+GYSL EAD+LRRAMGKK  EEM KQ+ +F+ GA   G+S+  A  IF+L+ KFA Y
Sbjct: 707  QVLAGYSLGEADLLRRAMGKKKPEEMAKQRAKFLEGAQARGLSEGHATGIFDLMEKFAGY 766

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA++SYQTAW+K H+P  F+A+ ++ +MDN +K+  F  +AR   ++++PP
Sbjct: 767  GFNKSHSAAYALLSYQTAWLKCHFPAPFMASVLSSDMDNTDKVVIFLDEARAMGLEVLPP 826

Query: 820  SVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKL 877
             VN     F+ V +  I Y L AIKGVG +    ++    A  PF  + D C RVD+ + 
Sbjct: 827  DVNRSDKPFRAVDERTIVYGLGAIKGVGESALDAVLGERDAHGPFGDVFDLCRRVDTGRA 886

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NRRVLE+L  +G+LD    +R   +  +      A+ V +++     ++F          
Sbjct: 887  NRRVLEALCRSGSLDSLVPNRATGMAQIPAALAAAEQVTRDQAAGQTDLFGGPAEAVIAP 946

Query: 938  ----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES------- 986
                  + +        R   E+  LG + +GHP+D Y+  L  +     +         
Sbjct: 947  GGAGEEVAEEPEWPEEERLAAEKATLGLFLTGHPIDRYEHELPYLATDRLQRLASGAGGS 1006

Query: 987  ---VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   RG ++  A +VV+ + + T  G R+  +T  +     E   FP
Sbjct: 1007 GGDGNGGRGRSVTAAGLVVALRVRSTSTGGRLATLTLDDRTGRIEVVLFP 1056


>gi|302345204|ref|YP_003813557.1| putative DNA polymerase III subunit alpha [Prevotella melaninogenica
            ATCC 25845]
 gi|302149818|gb|ADK96080.1| putative DNA polymerase III subunit alpha [Prevotella melaninogenica
            ATCC 25845]
          Length = 1239

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/1120 (31%), Positives = 540/1120 (48%), Gaps = 107/1120 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66
             +VHL VH++YS+L+G   +  ++DK  AD    +AITD   +F   EF+          
Sbjct: 3    DYVHLHVHTNYSILDGQSKVTRLVDKAIADGMKGMAITDHGVMFGIKEFADYCAKVNKGR 62

Query: 67   -------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                    +PI GC++ +  +              +   +++L     GY+ LI+LVS  
Sbjct: 63   KEKGEEPFKPIFGCEMYVARRTMHDKDKS--MHDNSGYHLIVLAKNYTGYKNLIKLVSNA 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            + +D      R     L++   EGLI+ T   +G +      +  + A +    + ++FG
Sbjct: 121  W-VDGYYYRPRTDREQLEKYH-EGLIVCTACIAGEVPNKIIHDDIEGAREACEWYHRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     +++ A  + + +V TN+  F  +E  E
Sbjct: 179  DDFYLELQRHEVKDPSLVANREAYPLQQKANKVLMKFAQEYGIKIVCTNDCHFEDKETAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++ +  +    R R +   + K R+EM  IFSD+PEA+ NT+EI  +      
Sbjct: 239  AHDHLLCLSTNEDLDDPKRMRYSKQEWFKTRAEMNEIFSDIPEAMTNTLEILNKVETYDI 298

Query: 287  VHAPILPRFIEKECDDIQKE---------------------------------------- 306
             H PI+P F   E    ++E                                        
Sbjct: 299  NHGPIMPFFPIPEDFGTEEEWKKKFTEEDLYKEFTTDENGENPLPPEEGQKVIDRLGGYE 358

Query: 307  -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E + L   A  G +             + + +  + FEL+V+  M F GYFLI
Sbjct: 359  KMYRIKFEADYLAKLAYDGAKKLYGDPL------SDEVKNHIRFELHVMKTMGFPGYFLI 412

Query: 360  VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V DFI  A++  ++ VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD 
Sbjct: 413  VQDFINAARQELDVMVGPGRGSAAGSVVAYCLGITQIDPLKYDLLFERFLNPDRVNLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R  V+++V +KYGHE  A IIT+ ++  K +++DV R  ++P    + LCK 
Sbjct: 473  DTDFDDDGRGRVLQWVMDKYGHENCAHIITYSTMATKNSIKDVARVEKLPVDVSNALCKA 532

Query: 479  IPNDPAHPVSLQ---AIADDSRFREARLADPSV-DRLLEISQKLEGLYRHASTHAAGIVI 534
            IP    + + +    AI      + A +++       ++ ++ LEG  R    HA G +I
Sbjct: 533  IPERLPNGMKMNLTNAIKCTPELQNAEVSEDIRERNTIKYAKMLEGTVRGTGIHACGFII 592

Query: 535  GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               P+ + VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ L+++   +
Sbjct: 593  CRNPIDEWVPISTATDPDFPEKKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVV 652

Query: 590  AQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             Q RG  +DL  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +
Sbjct: 653  KQTRGDVIDLEKIPIDDELTYQLYQRGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNA 712

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RK+    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  
Sbjct: 713  LYRPGPMDYIPDFIKRKHDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E+D LR+AMGKK+K  +DK K +FI    +NG    I   I+    KFA Y FNKSHA  
Sbjct: 773  ESDALRKAMGKKMKAIVDKMKPKFIKQGQENGHDPQILEKIWSDWEKFASYAFNKSHATC 832

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ ++YQTA+MK HYP E++AA MT     + +I K  ++ +   I  + P VN   + F
Sbjct: 833  YSWVAYQTAYMKAHYPAEYMAALMTRRFSQITEITKLMEECKALKIATLGPDVNESQIGF 892

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V     I + L+AIKG+G + A  I+     + P+  + DF  RVD   +NR+  ESL 
Sbjct: 893  GVNKHGEIRFGLSAIKGMGASAADSIVRERMENGPYKDIYDFAERVDLSNVNRKAFESLA 952

Query: 887  FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            ++G  D FG  R Q           LD I +Y Q  +  +  +  ++F            
Sbjct: 953  YSGGFDSFGLQREQYFAVTAKGDLFLDTIVRYGQLFQAEKAQQQNSLFGGMDAIDVVHPI 1012

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------EESVATIRGN 993
              K        +   E+ ++G Y S HPLD Y  +L  M                  + +
Sbjct: 1013 APKAEKWPVIEKLNKERELVGIYLSAHPLDEYSVVLNNMCNTRCSMIGRNANMTELAKAD 1072

Query: 994  NIRLAAMVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFF 1032
             +    +V S  ++ + + G   G+VT  +     E   F
Sbjct: 1073 EVTFGGIVTSVNERFSQKTGKPFGFVTIEDFEGTGELALF 1112


>gi|218129192|ref|ZP_03457996.1| hypothetical protein BACEGG_00767 [Bacteroides eggerthii DSM 20697]
 gi|217988570|gb|EEC54890.1| hypothetical protein BACEGG_00767 [Bacteroides eggerthii DSM 20697]
          Length = 1265

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1147 (31%), Positives = 565/1147 (49%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNGGP 62

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC   I        +PIIGC++ +       
Sbjct: 63   KGEIKDLKKRIAGIESGEIACEDKEAEIAACKEKIAEAENKLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVSR + +       R   + L++   EGL
Sbjct: 120  MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTMG-YYMRPRTDRNELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G I +    +    AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 178  IVCSACIGGEIPKKIINDQLDEAEEAVRWYKNLFGDDFYLELQRHKATVPRANHEAYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +   +++++ A  + + ++ +N+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  QKANAKLLEYAKKYGIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    ++        
Sbjct: 298  MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRKKYTE 357

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L   A  G +      
Sbjct: 358  KDLFDEFTQDENGNVVLDEDAAKAKIKRLGGYDKLYRIKLEADYLAKLAFDGAKRLYGDP 417

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                   + + ++RL FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS 
Sbjct: 418  L------SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSA 471

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V  KYG E+VA 
Sbjct: 472  VAYCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAH 531

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL 503
            IIT+G++  K A++DV R  ++P S+ DRL KL+P+           AIA     + A  
Sbjct: 532  IITYGTMATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQVAEA 591

Query: 504  -ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558
              DP V   L+ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+
Sbjct: 592  SPDPLVRDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL++++++++ +   RGVK+D+  I   D  TY L     T
Sbjct: 652  EGSVIEDTGLIKMDFLGLKTLSIIKEAVENVRLHRGVKLDIDKISIKDPATYKLYCDGRT 711

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+
Sbjct: 712  IGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPI 771

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI+G  
Sbjct: 772  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQ 831

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + 
Sbjct: 832  KNGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLS 891

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA 856
            ++  I K   + +   I+++ P VN   + F V  +  I + L A+KGVG      IME 
Sbjct: 892  DITTITKLMDECKSMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVHSIMEE 951

Query: 857  S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907
               + P+  + DF  RV+    N++ LE L  AG  D F    R Q           ++ 
Sbjct: 952  REKNGPYTGIFDFVQRVNLNSCNKKNLECLALAGGFDSFPELKREQYFAVNAKNEVFIET 1011

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E         +      +   R   E+ ++G Y S HP
Sbjct: 1012 LVRYGNRYQADKAAAVNSLFGGENVVDIATPEILPAERWSDLDRLNRERDLVGIYLSAHP 1071

Query: 968  LDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y  +L  +      E        G  I +  +V S ++  ++ G+  G     + + 
Sbjct: 1072 LDEYSVVLEHVCNTHMAELEDKAALVGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSG 1131

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1132 SAELPFF 1138


>gi|207091746|ref|ZP_03239533.1| DNA polymerase III subunit alpha [Helicobacter pylori HPKX_438_AG0C1]
          Length = 1211

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1078 (34%), Positives = 584/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  ++      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     N+             A+K    +
Sbjct: 115  FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +K   GL+ RL    +        Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAKNEGLDFEDDASYFAHKVREGLKERL---ILVPKEKHDQYQERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|111018082|ref|YP_701054.1| DNA polymerase III subunit alpha [Rhodococcus jostii RHA1]
 gi|110817612|gb|ABG92896.1| DNA-directed DNA polymerase III alpha subunit [Rhodococcus jostii
            RHA1]
          Length = 1178

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/1063 (29%), Positives = 521/1063 (49%), Gaps = 45/1063 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL  H+ YS+L+GA  +  + ++       A+ +TD  N++ A EF  +A   GI
Sbjct: 2    ADSFVHLHNHTEYSMLDGAAKVGPLFEEAERLGMSAVGMTDHGNMYGASEFYNEAKKQGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +PIIG +  I  +                    +       + ++   A G + L +L S
Sbjct: 62   KPIIGIEAYIAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +  Q  +  R+    L     EG+I  TG  SG I         + A +    ++++
Sbjct: 122  LASIEGQLGKWARMD-EELIATHHEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI 180

Query: 178  FG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            +G D  ++ L  H    +R     +++++   E+P +ATN+  ++++E  E H+ L+ + 
Sbjct: 181  WGKDNFFLELMDHGLSIERRVREGLLEISKKLEIPPLATNDCHYVTKEAAENHEALLCIQ 240

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                +S   R +   D Y    +  +    D          +                  
Sbjct: 241  TGKTLSDPTRFKFDGDGYYLKPAAEMRALWDDQVPGACDNTLLIAERVQSYDDVWAHHDR 300

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +        + +   LR + + GL+ R   G        ++Y  R D+E+ VI  M F  
Sbjct: 301  MPIFPVPEGETQGTWLRKEVMRGLDRRFPDG------PPEEYLARADYEIGVILEMGFPA 354

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+V D I  A++  I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R+SM
Sbjct: 355  YFLVVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERVSM 414

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR- 474
            PD DIDF   RR E++RY  +K+G +RVAQ+ITFG+++ KAA++D  R            
Sbjct: 415  PDIDIDFDDRRRGEMVRYATDKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGFAIAD 474

Query: 475  --LCKLIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
                 L P   A  +S         +   +    R    ++P V ++ + ++ LEGL R+
Sbjct: 475  QITKALPPPIMAKDISVSGITDPNHERYKEAVEVRALIDSNPDVAKIYQTAKGLEGLIRN 534

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            A  HA  +++   PL   +P+++  +    +T ++    E  GL+K DFLGL+ LT++  
Sbjct: 535  AGVHACAVIMSSEPLMDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGD 594

Query: 585  SLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            ++D +   RG+ +DL  +  DD  TY LL+   TLG+FQL+ S MR  L  MQP   EDI
Sbjct: 595  AIDNIKANRGIDLDLDTLALDDQATYELLSRGDTLGVFQLDGSAMRDLLRRMQPTGFEDI 654

Query: 644  IALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQVMQ 697
            +A+++LYRPGP+       Y +RKNG++++  IHP ++  LK    +T G+I+YQEQ+MQ
Sbjct: 655  VAVLALYRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKEILADTYGLIVYQEQIMQ 714

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IAQ ++GYSL +AD+LRRAMGKK    +++    F  G   N  S+     +++ +  FA
Sbjct: 715  IAQKVAGYSLGQADILRRAMGKKKLSVLEEAYAGFREGMLANEFSEPAIKALWDTILPFA 774

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             Y FNKSHAA Y ++S+ T ++K +YP E++A  +T   D+ +K   +  D R+  I ++
Sbjct: 775  GYAFNKSHAAGYGLVSFWTGYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKMGITVL 834

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKK 876
            PP VN   V+F      I + + A++ VG      I++A  +K  F    D+ +++D+  
Sbjct: 835  PPDVNESEVNFASVGEDIRFGMGAVRNVGANVVGSIIKARKEKSKFVDFSDYLNKIDAAA 894

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             +++V ESL+ AG  D  G+ R  L+    +        +K       ++F  +    S 
Sbjct: 895  CSKKVTESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAIGQFDLFGGDDADESI 954

Query: 937  K----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TI 990
                 + +      +S  R   E+ +LG Y SGHPL+  + +L           +     
Sbjct: 955  SSVFNVKIPD-EEWDSKHRLALEREMLGLYVSGHPLNGVEHVLSAQSDTAIPTILEGDIK 1013

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G  + +  ++ S  ++  + G         +     E  FFP
Sbjct: 1014 DGTQVTVGGILASVNRRINKNGLTWASAQLEDLTGGIEVLFFP 1056


>gi|317475168|ref|ZP_07934435.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA]
 gi|316908621|gb|EFV30308.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA]
          Length = 1274

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1147 (31%), Positives = 566/1147 (49%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF+          
Sbjct: 12   DFVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNGGP 71

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC   I        +PIIGC++ +       
Sbjct: 72   KGEIKDLKKRIAGIESGEIACEDKEAEIAACKEKIAEAENKLFKPIIGCEMYVA---RRT 128

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVSR + +       R   + L++   EGL
Sbjct: 129  MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTMG-YYMRPRTDRNELEKYH-EGL 186

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G I +    +    AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 187  IVCSACIGGEIPKKIINDQLDEAEEAVRWYKNLFGDDFYLELQRHKATVPRANHEAYPLQ 246

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +   +++++ A  + + ++ +N+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 247  QKANAKLLEYAKKYGIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 306

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    ++E       
Sbjct: 307  MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEEYRKRYTE 366

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L   A  G +      
Sbjct: 367  KDLFDEFTQDENGNVVLDEDAAKAKIKRLGGYDKLYRIKLEADYLAKLAFDGAKRLYGDP 426

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                   + + ++RL FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS 
Sbjct: 427  L------SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSA 480

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V  KYG E+VA 
Sbjct: 481  VAYCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAH 540

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL 503
            IIT+G++  K A++DV R  ++P S+ DRL KL+P+           AIA     + A  
Sbjct: 541  IITYGTMATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQAAEA 600

Query: 504  -ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558
              DP V   L+ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+
Sbjct: 601  SPDPLVRDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 660

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL++++++++ +   RGVK+D+  I   D  TY L     T
Sbjct: 661  EGSVIEDTGLIKMDFLGLKTLSIIKEAVENVRLHRGVKLDIDKISIKDPATYKLYCDGRT 720

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+
Sbjct: 721  IGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPI 780

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI+G  
Sbjct: 781  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQ 840

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + 
Sbjct: 841  KNGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLS 900

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA 856
            ++  I K   + +   I+++ P VN   + F V  +  I + L A+KGVG      IME 
Sbjct: 901  DITTITKLMDECKSMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVHSIMEE 960

Query: 857  S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907
               + P+  + DF  RV+    N++ LE L  AG  D F    R Q           ++ 
Sbjct: 961  REKNGPYTGIFDFVQRVNLNSCNKKNLECLALAGGFDSFPELKREQYFAVNAKNEVFIET 1020

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E         +      +   R   E+ ++G Y S HP
Sbjct: 1021 LVRYGNRYQADKAAAVNSLFGGENVVDIATPEILPAERWSDLDRLNRERDLVGIYLSAHP 1080

Query: 968  LDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y  +L  +      E        G  I +  +V S ++  ++ G+  G     + + 
Sbjct: 1081 LDEYSVVLEHVCNTHMAELEDKAALVGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSG 1140

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1141 SAELPFF 1147


>gi|229490423|ref|ZP_04384264.1| DNA polymerase III, alpha subunit family [Rhodococcus erythropolis
            SK121]
 gi|229322713|gb|EEN88493.1| DNA polymerase III, alpha subunit family [Rhodococcus erythropolis
            SK121]
          Length = 1178

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/1063 (30%), Positives = 526/1063 (49%), Gaps = 45/1063 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL  H+ YS+L+GA  +  + ++ A  +  A+ +TD  N++ A +F  +A +AGI
Sbjct: 2    ADSFVHLHNHTEYSMLDGAAKVGAMFEEAARLEMTAVGMTDHGNMYGASQFYNEAKSAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +PIIG +  I  +                    +       + ++   A G + L +L S
Sbjct: 62   KPIIGIEAYIAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +  Q  +  R+    L     EG+I  TG  SG I         + A +    ++++
Sbjct: 122  LASIEGQLGKWPRMD-EELIAAHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI 180

Query: 178  FG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            +G D  ++ L  H    +R     ++ +     +P +ATN+  +++++  E H+ L+ + 
Sbjct: 181  WGPDNFFLELMDHGLSIERRVREGLLDIGKQLGIPPLATNDCHYVTKDAAENHEALLCIQ 240

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                +S   R +   D Y    +  +    D          +A                 
Sbjct: 241  TGKTLSDPTRFKFDGDGYYLKSAAEMRAIWDNEVPGACDNTVAIGERVQSYEDVWAFHDR 300

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +          ++  LR + + GL+ R   G        Q+Y  R D+E+ VI  M F  
Sbjct: 301  MPIFPVPEGHTQQTFLRAEVMRGLDRRFPSG------PPQEYLARADYEIGVINEMGFPA 354

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+V D I  AK   I VGPGRGS AGS+ AYA+ IT+IDP+ + LLFERFLNP+R+SM
Sbjct: 355  YFLVVGDLINHAKDVGIRVGPGRGSAAGSLVAYAMGITNIDPIPYGLLFERFLNPERVSM 414

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR- 474
            PD DIDF   RR E++RY  +K+G+++VAQ+ITFG+++ KAA++D  R            
Sbjct: 415  PDIDIDFDDRRRGEMVRYATDKWGNDKVAQVITFGTIKTKAAIKDSARVQFGKPGFAIAD 474

Query: 475  --LCKLIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
                 L P   A  +S         +   +    R    + P V ++ + +  LEGL R+
Sbjct: 475  QITKALPPPIMAKDISVSGITDPKHERYKEAVEVRALIDSSPDVAKIYKTAVGLEGLIRN 534

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            A  HA  +++   PL+  +P+++  +    +T ++    E  GL+K DFLGL+ LT++  
Sbjct: 535  AGVHACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGD 594

Query: 585  SLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +L+ +   RG+ +DL  +P DD  TY LL    TLG+FQL+  GMR+ L+ MQP    DI
Sbjct: 595  TLENIKANRGIDLDLDTLPMDDAATYELLARGDTLGVFQLDGGGMRELLKLMQPTGFGDI 654

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQVMQ 697
            +A ++LYRPGP+  D  + Y  RKN  E +  IHP ++      L ET G+IIYQEQ+MQ
Sbjct: 655  VAALALYRPGPMGVDAHISYAKRKNALEDVKPIHPELEEPLAEILSETYGLIIYQEQIMQ 714

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            +AQ ++GY+L +AD+LRRAMGKK   E++K    F  G   N  S+     +++ +  FA
Sbjct: 715  LAQKVAGYTLGQADLLRRAMGKKKLSELEKAYAGFRQGMLDNNFSEAAIKALWDTVLPFA 774

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             Y FNKSH+A Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  I ++
Sbjct: 775  GYAFNKSHSAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKSAIYLADCRKLGITVL 834

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKK 876
            PP VN   VDF    + I + + +++ VG      I++A  +K  F    D+  ++D+  
Sbjct: 835  PPDVNESRVDFATVGDDIRFGMGSVRNVGANVVASIIKARTEKSKFTDFSDYLGKIDAMA 894

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             N++V ESL+ AGA D  G+ R  L+    +        +K       ++F   +   S 
Sbjct: 895  CNKKVTESLIKAGAFDSLGHPRKGLMLVHADAIDSVMSTKKAEAIGQFDLFGGAEADESI 954

Query: 937  ----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TI 990
                 + +      +S  R   E+ +LG Y SGHPL+  + ILR+         +     
Sbjct: 955  TSVFDVKIPD-EEWDSKHRLALEREMLGLYVSGHPLNGVEHILRQQSDTSIAAILEGGVQ 1013

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G  + L  ++ S  ++  + G     V   +     E  FFP
Sbjct: 1014 DGAQVTLGGIIASVDRRVNKNGLTWCIVQLEDLVGGIEVLFFP 1056


>gi|226307018|ref|YP_002766978.1| DNA polymerase III alpha subunit [Rhodococcus erythropolis PR4]
 gi|226186135|dbj|BAH34239.1| DNA polymerase III alpha subunit [Rhodococcus erythropolis PR4]
          Length = 1202

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/1063 (30%), Positives = 527/1063 (49%), Gaps = 45/1063 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL  H+ YS+L+GA  +  + ++ A  +  A+ +TD  N++ A +F  +A +AGI
Sbjct: 26   ADSFVHLHNHTEYSMLDGAAKVGAMFEEAARLEMTAVGMTDHGNMYGASQFYNEAKSAGI 85

Query: 68   QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +PIIG +  I  +                    +       + ++   A G + L +L S
Sbjct: 86   KPIIGIEAYIAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSS 145

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +  Q  +  R+    L     EG+I  TG  SG I         + A +    ++++
Sbjct: 146  LASIEGQLGKWPRMD-EELIAAHAEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI 204

Query: 178  FG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            +G D  ++ L  H    +R     ++ +     +P +ATN+  +++++  E H+ L+ + 
Sbjct: 205  WGPDNFFLELMDHGLSIERRVREGLLDIGKQLGIPPLATNDCHYVTKDAAENHEALLCIQ 264

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                +S   R +   D Y    +  +    D          +A                 
Sbjct: 265  TGKTLSDPTRFKFDGDGYYLKSAAEMRAIWDNEVPGACDNTVAIGERVQSYEDVWAFHDR 324

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +          ++  LR + + GL+ R   G        Q+Y  R D+E+ VI  M F  
Sbjct: 325  MPIFPVPEGHTQQTFLRAEVMRGLDRRFPSG------PPQEYLARADYEIGVINEMGFPA 378

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+V D I  AK   I VGPGRGS AGS+ AYA+ IT+IDP+ + LLFERFLNP+R+SM
Sbjct: 379  YFLVVGDLINHAKDVGIRVGPGRGSAAGSLVAYAMGITNIDPIPYGLLFERFLNPERVSM 438

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR- 474
            PD DIDF   RR E++RY  +K+G+++VAQ+ITFG+++ KAA++D  R            
Sbjct: 439  PDIDIDFDDRRRGEMVRYATDKWGNDKVAQVITFGTIKTKAAIKDSARVQFGKPGFAIAD 498

Query: 475  --LCKLIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
                 L P   A  +S         +   +    R    + P V ++ + +  LEGL R+
Sbjct: 499  QITKALPPPIMAKDISVSGITDPKHERYKEAVEVRALIDSSPDVAKIYKTAVGLEGLIRN 558

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            A  HA  +++   PL+  +P+++  +    +T ++    E  GL+K DFLGL+ LT++  
Sbjct: 559  AGVHACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGD 618

Query: 585  SLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +L+ +   RG+ +DL  +P DD  TY LL    TLG+FQL+  GMR+ L+ MQP    DI
Sbjct: 619  TLENIKANRGIDLDLDTLPMDDAATYELLARGDTLGVFQLDGGGMRELLKLMQPTGFGDI 678

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQVMQ 697
            +A ++LYRPGP+  D  + Y  RKN  E +  IHP ++      L ET G+IIYQEQ+MQ
Sbjct: 679  VAALALYRPGPMGVDAHISYAKRKNALEDVKPIHPELEEPLAEILSETYGLIIYQEQIMQ 738

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            +AQ ++GY+L +AD+LRRAMGKK   E++K    F  G   N  S+     +++ +  FA
Sbjct: 739  LAQKVAGYTLGQADLLRRAMGKKKLSELEKAYAGFRQGMLDNNFSEAAIKALWDTVLPFA 798

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             Y FNKSH+A Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  I ++
Sbjct: 799  GYAFNKSHSAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKSAIYLADCRKLGITVL 858

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKK 876
            PP VN   VDF    + I + + +++ VG      I++A  +K  F    D+  ++D+  
Sbjct: 859  PPDVNESRVDFATVGDDIRFGMGSVRNVGANVVASIIKARTEKSKFTDFSDYLGKIDAMA 918

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             N++V ESL+ AGA D  G+ R  L+    +        +K       ++F   +   S 
Sbjct: 919  CNKKVTESLIKAGAFDSLGHPRKGLMLVHADAIDSVMSTKKAEAIGQFDLFGGAEADESI 978

Query: 937  ----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TI 990
                 + + +    +S  R   E+ +LG Y SGHPL+  + ILR+         +     
Sbjct: 979  TSVFDVKIPE-EEWDSKHRLALEREMLGLYVSGHPLNGVEHILRQQSDTSIAAILEGGVQ 1037

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G  + L  ++ S  ++  + G     V   +     E  FFP
Sbjct: 1038 DGAQVTLGGIIASVDRRVNKNGLTWCIVQLEDLVGGIEVLFFP 1080


>gi|228470784|ref|ZP_04055632.1| DNA polymerase III, alpha subunit family [Porphyromonas uenonis 60-3]
 gi|228307457|gb|EEK16462.1| DNA polymerase III, alpha subunit family [Porphyromonas uenonis 60-3]
          Length = 1272

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/1132 (30%), Positives = 557/1132 (49%), Gaps = 115/1132 (10%)

Query: 5    LEKSPS-----------FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
            ++ +P            +V L VHS YS+L+G   +  I+DK  A   P IA+TD   ++
Sbjct: 1    MDNTPDTPHSPSAGTRMYVPLHVHSHYSILDGMAPVEKIVDKAVACGMPGIALTDHGAMY 60

Query: 54   SALEFSQKA------------CAAG------------------------------IQPII 71
                F+  A             + G                               + II
Sbjct: 61   GIKNFTNYANDKINGDKLSQIKSLGKQIKELEADAANAEEVARLQEEVKTIERSLFKAII 120

Query: 72   GCQLDID-------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            GC++ +         +D     N  ++   +   ++LL    +GY+ LI++VS  +    
Sbjct: 121  GCEVYVARRSLELKDKDAKDPDNPTRSIDRSGYHLILLAKNLKGYRNLIKMVSIAW-EHG 179

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    L E   EG+I  +    G I +       + A +    +++ FG+  Y+
Sbjct: 180  EYYKPRIDKKLLTE-HHEGIIASSACLGGEIAQHILHGRLEEARETARWYQETFGEDYYL 238

Query: 185  NLQRHRGYD-----------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             +  H   D           +    +V+++     + ++ATN++ FL+EED EAHD L+ 
Sbjct: 239  EIMLHPNSDPLGGQETYQKQQLVAQEVLKIGQELGIKVIATNDTHFLNEEDAEAHDHLIC 298

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            +  ++ +S  +R R T   +LK+  EM ++F+D P+ LENT+E+  +  +    HAP++P
Sbjct: 299  MTTNSPISDPNRMRYTKQEWLKSPEEMTALFADYPDVLENTLEVCDKVEYYSIDHAPLMP 358

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             F   E       E++ LR+    G + R             + ++R+D EL VI  M F
Sbjct: 359  HFELPEGF---ASEDDYLRHLTYEGAKKRYGDPV------PPEVQERIDMELGVIQNMGF 409

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFL+V DFI  A+K  + VGPGRGS AGS  AY L+IT I+P+++ LLFERFLNPDR+
Sbjct: 410  PGYFLVVQDFIAAARKLGVRVGPGRGSAAGSAVAYCLSITQIEPIKYGLLFERFLNPDRI 469

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPD DIDF    R  V+ +V NKYG + V+ IIT  ++  K A++ V R  ++P  Q +
Sbjct: 470  SMPDIDIDFDDKNRWRVLDWVTNKYGRDHVSNIITLTTMATKGAIKGVARVEELPLDQAN 529

Query: 474  RLCKLIPNDPAHPVSL----QAIADDSRFREA-RLADPSVDRLLEISQKLEGLYRHASTH 528
            RLCKLIP+ P   V        + ++  FREA    +  +   +  +++LEG       H
Sbjct: 530  RLCKLIPDRPPEGVKHLNLEWMVQNNQEFREASVSQNEQLANTIRYARQLEGTASTTGVH 589

Query: 529  AAGIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            A G++I   P+S +VP+      D      V Q+  K IE  GLIK DFLGL+TL+++  
Sbjct: 590  ACGVIISGPPVSDVVPLSTAIDPDTNERKLVAQYEGKVIEPTGLIKMDFLGLQTLSIIND 649

Query: 585  SLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +L+ +    G+ +D+  IP DD +T+ L +   T+G FQ ES GMR+ L+ ++P   +D+
Sbjct: 650  ALENIKVSYGIDLDIDTIPVDDPKTFELYSQGDTVGTFQFESPGMRKYLQQLEPTEFKDL 709

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            +A+ +LYRPGP+DNI  +  RK+G+++I    P ++P LK+T G+ +YQEQVM ++++L 
Sbjct: 710  VAMNALYRPGPMDNIPTFIERKHGRQEITYDLPEMEPYLKDTYGITVYQEQVMILSRVLG 769

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
             ++  ++D LR+AMGKK ++EM K + +F+      G  +     I++   KFA Y FNK
Sbjct: 770  DFTRGDSDSLRKAMGKKKEKEMAKYRIKFVENGVTKGHPRETLERIYDGWQKFASYAFNK 829

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+  YA ++YQTA++K HYP +F+AA +T   +  +K+ K+ ++ +   +++  P VN 
Sbjct: 830  SHSVCYAWVAYQTAYLKAHYPAQFMAALLTCNQNKSDKLTKYLEEVQHMGLEVKGPDVNE 889

Query: 824  PCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRV 881
                F    D  I + L  I  VG + A  I++   +   +  + DF  R D    +RR 
Sbjct: 890  SFTAFSANKDGVIRFGLGGISHVGLSVAEAIIKERKEQGAYQDVYDFFQRTDLTNCSRRA 949

Query: 882  LESLVFAGALDCFGYSRMQLLQSLD-----------------NIQKYAQWVEKNRTNKHE 924
            LE+L+ +GA D FG  R      +                   + +Y + +E  RT    
Sbjct: 950  LEALILSGAFDSFGIDREVYFAPIAKSGVSGLSYGKDETFLTALMQYGKILESERTQVQA 1009

Query: 925  NIFAHEKGT--FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
            ++F     +      I  +     ++  R   EQ  +G Y S HPLD Y   +  +    
Sbjct: 1010 SLFGDSDPSVKLPKPIPPKDVEPWSNLERLTKEQSYIGMYLSAHPLDPYAFAIEYLCNCP 1069

Query: 983  YEESVATIR-G-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +       G   +  A +V   +Q  ++K      +   + +   E   F
Sbjct: 1070 ASDLAQFAELGLTQLTCAGLVTKVRQGISKKNEPYAIIQIEDASGSGEIPLF 1121


>gi|118463133|ref|YP_882406.1| DNA polymerase III subunit alpha [Mycobacterium avium 104]
 gi|118164420|gb|ABK65317.1| DNA polymerase III alpha subunit [Mycobacterium avium 104]
          Length = 1177

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/1063 (30%), Positives = 521/1063 (49%), Gaps = 42/1063 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S SFVHL  H+ YS+L+GA  +  +L ++     PA+ +TD  N+F A EF   A  
Sbjct: 1    MNHS-SFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNAATK 59

Query: 65   AGIQPIIGCQLDIDMQDNLK----------MTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AGI+PIIG +  I                       +   +   + ++   A G + L +
Sbjct: 60   AGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMVAENAAGLRNLFK 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   +G+I  TG  SG +         + A +    +
Sbjct: 120  LSSLASFEGQLGKWSRMDAELIAE-HADGIIATTGCPSGEVQTRLRLGQDREALESAAKW 178

Query: 175  KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +++FG D  ++ L  H    ++     ++++     +P +ATN+  +++ +    H+ L+
Sbjct: 179  REIFGADNFFLELMDHGLSIEQRVRGGLLEIGRKLNIPPLATNDCHYVTRDAAHNHEALL 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             V     +S  +R +   D Y    +  +    D          +               
Sbjct: 239  CVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDAEVPGACDSTLLIAERVQSYAEVWTP 298

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
               +         ++ + L ++ +AGL  R   G        QDY  R ++E+ VI    
Sbjct: 299  RDRMPVFPVPEGHDQASWLHHEVMAGLRRRFPDGV------GQDYIDRAEYEIKVICDKG 352

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F  YFLIVAD I +A+  +I VGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R
Sbjct: 353  FPSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPER 412

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYS 470
             S PD DIDF   RR E++RY  +K+G +RVAQ+ITFG+++ KAAL+D  R    Q  ++
Sbjct: 413  PSAPDIDIDFDDRRRGEMVRYAADKWGSDRVAQVITFGTIKTKAALKDSARIHYGQPGFA 472

Query: 471  QVDRLCKL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
              DR+ K   P   A  +        S +   + +  R     DP V  + + ++ LEGL
Sbjct: 473  IADRITKALPPPIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGL 532

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+ LT+
Sbjct: 533  IRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTI 592

Query: 582  LQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +LD +   RG+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQP   
Sbjct: 593  IGDALDNIKANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEF 652

Query: 641  EDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQ 694
             DI+A+++LYRPGP+       Y +RKNG++ I  IHP ++      L ET G+I+YQEQ
Sbjct: 653  NDIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLREILAETYGLIVYQEQ 712

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            +M IAQ ++ Y++ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++ + 
Sbjct: 713  IMFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTIL 772

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  I
Sbjct: 773  PFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGI 832

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVD 873
             ++PP VN   V+F      I + L A++ VG      +++   +   F    D+ +++D
Sbjct: 833  TVLPPDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIKTREEKGKFTDFSDYLNKID 892

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
                N++V ESL+ AGA D   ++R  L     +        +K       ++F  + G 
Sbjct: 893  ISACNKKVTESLIKAGAFDSLKHARKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGDGGC 952

Query: 934  FSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATI 990
                 T++          +   E+ +LG Y SGHPL+    +L           +     
Sbjct: 953  TESVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTQIPAILDGDVP 1012

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                +R+  ++ S  ++  + G         +     E  FFP
Sbjct: 1013 NETQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1055


>gi|120437353|ref|YP_863039.1| DNA polymerase III subunit alpha-1 [Gramella forsetii KT0803]
 gi|117579503|emb|CAL67972.1| DNA polymerase III subunit alpha-1 [Gramella forsetii KT0803]
          Length = 1461

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/1084 (32%), Positives = 550/1084 (50%), Gaps = 77/1084 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--------- 61
            F HL  HS +S+L+  +S+ +++   A +   A+A+TD  N+  A  F ++         
Sbjct: 262  FAHLHNHSQFSVLQSTISIPDLIAAAADEDMNAVALTDHANMMGAFHFVKEIGTYNKSVK 321

Query: 62   -----ACAAG------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
                 A   G      ++ I+GC+  +         +  K+       +V+L     GY 
Sbjct: 322  EHNATAEENGEDLKKPLKGIVGCEFFVC------ENHADKSRKDNGYQVVMLAKNKNGYH 375

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L ++ S+ Y  D      RI    ++E   E +I+LTG   G +         + AE+ 
Sbjct: 376  NLAKMSSKAYT-DGFYYVPRIDKEVIREY-KEDIIVLTGNLYGEVPSKILNLGEKQAEEA 433

Query: 171  LLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            L+ +K+ FGD LY+ + RH   D  R    +V+ +  H++ L+ATNN+ +  +ED  AHD
Sbjct: 434  LVWWKEEFGDDLYIEMMRHDQEDENRVNPVLVEFSKKHDVKLIATNNTYYWKQEDANAHD 493

Query: 230  VLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
            +L+ V      +                ++Y K+ S+M  +F DLP A+ N  EI  +  
Sbjct: 494  ILLCVKDGEKQATPIGRGRGYRYGLPNTEYYFKSGSQMKKLFKDLPNAISNIQEIVDKVE 553

Query: 283  FILQVHAPILPRFIEKEC--------DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
                    +LP F   E         D  ++ E   L++    G + R            
Sbjct: 554  SFELARDVLLPAFEIPEEFLSEEDLADGGKRGENAFLKHITFEGAKKRYPD-------IT 606

Query: 335  QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
             +  +RL+FEL+VI    + GYFLIV DFI+ A++  + VGPGRGS AGSV AY L IT+
Sbjct: 607  PEIEERLNFELSVIENTGYPGYFLIVEDFIRAAREMGVSVGPGRGSAAGSVVAYCLWITN 666

Query: 395  IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
            IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV  KYG  +VAQIIT+G++ A
Sbjct: 667  IDPMKYDLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIKKYGANQVAQIITYGTMAA 726

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA------------IADDSRFREAR 502
            K+++RD  R L +P    DR+ KLIPN     +                I   +      
Sbjct: 727  KSSIRDTARVLDLPLMDSDRIAKLIPNTKLGKLFAMDDKTIKSKFRGDEIEKINELFNIS 786

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
              D      +  ++ LEG  R+   HA G++I    ++  VP+     SDL VTQF+   
Sbjct: 787  EGDDLEAETVNQARILEGSVRNTGIHACGVIITPGDITNYVPVSVAKDSDLYVTQFDNSV 846

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIF 621
            +E AGL+K DFLGLKTLTL++ ++  +  R     D    P DD ETY L     T+GIF
Sbjct: 847  VESAGLLKMDFLGLKTLTLIKDTVKIVKGRHDIDLDPDSFPLDDEETYKLFQRGETVGIF 906

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            Q ES GM++ ++ ++P   +D+IA+ +LYRPGP++ I  +  RK+G E+I    P ++  
Sbjct: 907  QYESPGMQKHMQSLKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGDEEISYDLPEMEEY 966

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            L+ET G+ +YQEQVM ++Q L+G+S  EAD+LR+AMGKK+   + + K +FI G ++ G 
Sbjct: 967  LEETYGITVYQEQVMLLSQKLAGFSKGEADMLRKAMGKKLVALLAQLKPKFIEGGNEKGH 1026

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
               +   I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA ++  M++++ 
Sbjct: 1027 PAEVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNMNDIKS 1086

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS--A 858
            +  F ++ ++  + ++ P VN     F V  DN + + + AIKGVG+     I+E     
Sbjct: 1087 VTFFMEECKRMKLNVLGPDVNESYYKFSVNKDNAVRFGMGAIKGVGSGAVATIVENRKTK 1146

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY-SRMQLLQS-------LDNIQK 910
            + P+ S+ D   R+D +  N++  E+L  AG  D FG   R Q           L+ + K
Sbjct: 1147 EGPYRSIFDMAKRIDLRSANKKAFENLALAGGFDGFGNTHRAQYFHDDGNGMSFLEKVVK 1206

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            YAQ  ++++ +   ++F         +  +       +  +   E+ V+G Y SGHPLD 
Sbjct: 1207 YAQKFQESQNSSQVSLFGEASDVQIPEPEVPGCEEWGTMEKLRREKEVVGIYISGHPLDD 1266

Query: 971  YKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            +K  +         +           + L  +VV  Q + ++ G      T  +  + YE
Sbjct: 1267 FKIEMSYFSNGKLSDCRDLESVVNRELTLGCVVVDVQHRVSKNGKGWAIFTVEDYDESYE 1326

Query: 1029 ANFF 1032
               F
Sbjct: 1327 FKIF 1330


>gi|188993898|ref|YP_001928150.1| DNA polymerase III alpha subunit [Porphyromonas gingivalis ATCC
            33277]
 gi|188593578|dbj|BAG32553.1| DNA polymerase III alpha subunit [Porphyromonas gingivalis ATCC
            33277]
          Length = 1228

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1110 (32%), Positives = 571/1110 (51%), Gaps = 99/1110 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            FVHL VHS +SLL+G  ++N+++DK  AD  P IA+TD   +F   EF            
Sbjct: 4    FVHLHVHSQFSLLDGQAAINDLVDKAIADGMPGIALTDHGAMFGIKEFYNYVEKKNSGHN 63

Query: 67   --------------------------------------------IQPIIGCQLDIDMQDN 82
                                                         +PI+GC+     +  
Sbjct: 64   ATLKDCRRELDQLNDSKSADMLTDEERNRIVKLQQKIEETKKLLFKPILGCEAYCARRTR 123

Query: 83   LKMTNQGKTPF-------PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
                NQ   P+        +   ++LL     GY+ LI++VS  +   Q     RI    
Sbjct: 124  FDKDNQIPDPYHPRRSIDASGWHLILLAKNLRGYKNLIKMVSYSWTEGQ-YYRPRIDREL 182

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR----- 190
            LQ+   EG+I+ +    G I +         AE+ +L FK+LFGD  Y+ +QRH      
Sbjct: 183  LQKYH-EGIIVSSACLGGEIPQHIMAGEIAKAEEAILWFKELFGDDYYLEVQRHETHNPL 241

Query: 191  ------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                     +     +++L     + ++ATN+  F +EED EAHD L+ ++    +   +
Sbjct: 242  GNQDVFPQQQRVNRVILELGKKLGVKVIATNDVHFCNEEDAEAHDRLICLSTGKDLDDPN 301

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R T   ++K  +EM +IF DLPE L NT+EI  +  F    +  ++P F         
Sbjct: 302  RMRYTKQEWMKTTAEMSAIFEDLPETLSNTLEILDKVEFYSIDNKALMPDFPIP---PEY 358

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K++++ LR     G   +  +        + + ++R+DFEL  I  M F GYFLIV DFI
Sbjct: 359  KDDDDYLRFLTYEGARRKYGEDL------SDEIKERIDFELETIKGMGFPGYFLIVQDFI 412

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
              A+   + VGPGRGS AGS  AY L ITDIDP+++ LLFERFLNPDR+SMPD D+DF  
Sbjct: 413  AAARSMGVSVGPGRGSAAGSAVAYCLGITDIDPIKYHLLFERFLNPDRISMPDIDVDFDD 472

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP- 483
            D R E++R+V  KYG ERVA IIT+G++  K++++DV R  ++P  + +RL KL+P+   
Sbjct: 473  DGRAEILRWVTEKYGKERVAHIITYGTMATKSSIKDVARVQRLPLPESNRLAKLVPDKIP 532

Query: 484  --AHPVSLQAIADDSRFREARLADPS-VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                    +AI      ++A L+    +   L+ +Q LEG  R+   HA GI+IG   +S
Sbjct: 533  GEKKVNLKKAIEFVPELKQASLSSDKVMRDTLKYAQMLEGNVRNTGVHACGIIIGKTDIS 592

Query: 541  QLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
             +VP+      D      VTQ+    IE+ GLIK DFLGLKTL++++++L  + +R    
Sbjct: 593  DVVPVSTAPDKDTKEELLVTQYEGSVIEQTGLIKMDFLGLKTLSIIKEALVNIKRRHGID 652

Query: 597  -DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             ++  IP DD  TY L +   T+G FQ ES GM++ L  +QP   ED+IA+ +LYRPGP+
Sbjct: 653  LNIDTIPLDDPLTYKLYSDGRTIGTFQFESGGMQKYLRELQPSAFEDLIAMNALYRPGPM 712

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+E I    P ++  LKET GV +YQEQVM +++ L+G++  ++D LR+
Sbjct: 713  DYIPSFIARKHGREPIDYDLPEMEEYLKETYGVTVYQEQVMLLSRKLAGFTRGQSDELRK 772

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK+ E+M+  K +F+ G +KNG  + +   I+    KFA Y FNKSHA  Y+ ++YQ
Sbjct: 773  AMGKKLIEKMNVLKVKFLEGGNKNGHPEEVLEKIWTDWEKFASYAFNKSHATCYSWVAYQ 832

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNR 834
            TA++K +YP E++A +++  ++N+ +I K   + +   I ++ P VN   + F V  +  
Sbjct: 833  TAYLKANYPAEYMAGALSRNLNNITEITKLMDECKSMKIGVLVPDVNESEMKFSVNANGD 892

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L+A+KGVG+     I+    A+  +  + DF  R++    NR+ +ESL  AGA D 
Sbjct: 893  IRFGLSAVKGVGSGAVEQIIAEREANGLYKDIFDFVERINLSACNRKTMESLALAGAFDS 952

Query: 894  FGYSRMQLLQS---------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            F  SR + +           +  + +Y   V++ + ++  ++F  E+     +       
Sbjct: 953  FALSREEYMAPPLTGREESYIQALMRYGSVVQEEKHSQSNSLFGEEEDLMIPRPQPSPTE 1012

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIRGNNIRLAAMVV 1002
              N   R   E+ ++G Y S +P+  Y+ IL         +     ++ G N+ LA +V 
Sbjct: 1013 PWNDLERLNKERELVGLYLSSNPMAQYQVILDHYCNTHAADLTDPDSLVGKNLVLAGIVT 1072

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               Q  +R  +    +T  + +   E   F
Sbjct: 1073 KAFQGISRSNNPYSKITLEDLSGTGEIPLF 1102


>gi|217031799|ref|ZP_03437302.1| hypothetical protein HPB128_199g7 [Helicobacter pylori B128]
 gi|298735572|ref|YP_003728093.1| DNA polymerase III subunit alpha [Helicobacter pylori B8]
 gi|216946451|gb|EEC25053.1| hypothetical protein HPB128_199g7 [Helicobacter pylori B128]
 gi|298354757|emb|CBI65629.1| DNA polymerase III subunit alpha [Helicobacter pylori B8]
          Length = 1211

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1078 (34%), Positives = 584/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  ++      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     N+             A+K    +
Sbjct: 115  FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQKEEEN----------ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +   +              +KA  GL+ RL    +        Y++RL+
Sbjct: 294  NPPTPPSFKFTKSYAKEEGLNFEDDASYFAHKAREGLKERL---ILVPKEKHDQYQERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++ +  ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNDTARQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYALKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F   +G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMEGGIKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|189468209|ref|ZP_03016994.1| hypothetical protein BACINT_04605 [Bacteroides intestinalis DSM
            17393]
 gi|189436473|gb|EDV05458.1| hypothetical protein BACINT_04605 [Bacteroides intestinalis DSM
            17393]
          Length = 1264

 Score =  713 bits (1841), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/1140 (31%), Positives = 574/1140 (50%), Gaps = 122/1140 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF----------- 58
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF           
Sbjct: 3    DFVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 59   ---SQKACA--AGI-----------------------------QPIIGCQLDIDMQDNLK 84
                +      AGI                             +PIIGC++ +       
Sbjct: 63   KGEIKDLKKRMAGIESGEIACDDKEAELADCRAKIAEAENKLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVSR +         R   + L++   EGL
Sbjct: 120  MDKKEGKPDQSGWHLIVLAKNEKGYHNLIKLVSRAWTKG-YYMRPRTDRNELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +    +  + AE+ +  +K LFG+  Y+ LQRHR              
Sbjct: 178  IVCSACIGGEVPKKIINDQLEDAEEAIRWYKNLFGEDYYLELQRHRATIPRANHEAYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +   +++++ A  + + L+ +N+  F++EE  EAHD L+ ++    +   +R   T   +
Sbjct: 238  QKANAKLIEFAKKYNIKLICSNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK-------- 305
            +K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    ++        
Sbjct: 298  MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 357

Query: 306  ------------------EEENELRNKAVAGLEVRLAQGAIAK---------------GY 332
                              EE+ + + K + G E        A                  
Sbjct: 358  KDLFDEFTQDENGNVVLSEEDAKAKIKRLGGYEKLYRIKLEADYLAKLTFDGAKIFYGDP 417

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
             +++  +RL FEL+++  M F GYFLIV DFI   +   + +GPGRGS AGS  AY L I
Sbjct: 418  LSEEVMERLKFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAVAYCLQI 477

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T IDP+++ LLFERFLNPDR+S+PD DIDF  D R EV+R+V  KYG E+VA IIT+G++
Sbjct: 478  TKIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTQKYGQEKVAHIITYGTM 537

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL-ADPSVD 509
              K A++DV R  ++P S+ DRL KL+P+           AI      + A    DP V 
Sbjct: 538  ATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIDYVPELQAAEASPDPLVR 597

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEK 565
              L+ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+    IE 
Sbjct: 598  DTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIED 657

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             GLIK DFLGLKTL++++++++ +   RG+ +++  +P DD  TY L +   T+G FQ E
Sbjct: 658  TGLIKMDFLGLKTLSIIKEAVENVRLHRGLALNIDKVPIDDPATYKLYSDGRTIGTFQFE 717

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            S+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK+
Sbjct: 718  SAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLKD 777

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  KNG    
Sbjct: 778  TYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDPK 837

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I K
Sbjct: 838  VLEKIWGDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSNITDITK 897

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862
               + +   I+++ P VN   + F V  +  I + L A+KGVG     +IME    +  F
Sbjct: 898  LMDECKSMGIKVLGPDVNESNLKFTVNPEGNIRFGLGAVKGVGEGAVLNIMEEREKNGSF 957

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQW 914
              + DF  RV+    N++ LE L  AG  D F    R Q           L+ + +Y   
Sbjct: 958  KGIFDFVQRVNLTACNKKNLECLALAGGFDEFPELRREQYFAVNSKNEVFLETLVRYGNR 1017

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
             + ++     ++F  +         + +    +   R   E+ ++G Y S HPLD Y  +
Sbjct: 1018 YQADQAAAANSLFGGDNVVDIATPEIPEAERWSDLDRLNKERDLVGIYLSAHPLDEYSVV 1077

Query: 975  LRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            L+ +      E      + G  I +  +V S ++  ++ G+  G     + +   E  FF
Sbjct: 1078 LQHVCNTRMAELEDKTALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGSAELPFF 1137


>gi|239816093|ref|YP_002945003.1| DNA polymerase III, subunit alpha [Variovorax paradoxus S110]
 gi|239802670|gb|ACS19737.1| DNA polymerase III, alpha subunit [Variovorax paradoxus S110]
          Length = 1172

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1050 (39%), Positives = 600/1050 (57%), Gaps = 45/1050 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   ++ ++   AAD+QPA+AITD NNLF A++F ++  + G++P+
Sbjct: 2    FVHLRLHTEFSVVDGTNRIDEVVKAAAADKQPALAITDLNNLFGAVKFYKQGRSKGVKPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ--S 128
            IG ++ I+                 +  IVLLV   EGY  L EL++R +  + G+    
Sbjct: 62   IGAEIFIE---------GLGKEPGVLTRIVLLVQNMEGYLHLSELLARAWTQNVGRGQSQ 112

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                L WLQE+   GLI L+G  +GP+         + A +  L    +F  R Y+ LQR
Sbjct: 113  AACKLEWLQEL-QGGLIALSGAQAGPLGAPLLQGQEERAAELALQLAGMFPHRFYIELQR 171

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D       V+LA    LP+VAT+   F   +DYEAH+  + ++   ++    R R
Sbjct: 172  AGRPEDEPHVIAAVKLAARLRLPVVATHPVQFAERQDYEAHEARVCISEGEILGNPRRVR 231

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + Y K+ +EM ++F+D+P AL NTVEIA+RC+  L +  P LP F      +  + 
Sbjct: 232  KFTEEQYFKSSAEMQALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFISEGVRM 291

Query: 307  E-ENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +   R ++  GLE     L      +      Y +RL+FE+N I  M F GYFLIV D
Sbjct: 292  PIDEFFRQESFLGLEERLAHLYPDPARREAERPRYVERLEFEINTILNMGFPGYFLIVGD 351

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK N  PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 352  FIKWAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDF 411

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI YV++KYG + V+QI TFG++ A+AA+RDVGR L M Y   D + KLIPN 
Sbjct: 412  CQGNRDRVIDYVKDKYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNK 471

Query: 483  PAHPVSLQA--------------IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            P  PV++Q               I  + +       +  V  L+E++QKLEG+ R+   H
Sbjct: 472  PGQPVTIQYPPNPKVEGDKNNYAIEMEPQLAARIEKEEEVRMLVELAQKLEGMTRNIGMH 531

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            A G++I    L+   P+Y+   SD  V+Q++   +E  GL+KFDFLGL TLT+L+ + +F
Sbjct: 532  AGGVLIAPGKLTDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAKEF 591

Query: 589  LAQRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            + +R           I  DD ETY L +   T  +FQ ES GM+  L+  +P  +ED+IA
Sbjct: 592  IVKRHKGQENFAYENIKLDDRETYKLFSEGKTEAVFQFESRGMQGMLKDARPTRLEDLIA 651

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            L +LYRPGP+D I  +  RK+G+E++   HP +  ML ET G+++YQEQVMQ AQ+L GY
Sbjct: 652  LNALYRPGPMDLIPSFVARKHGREEVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGY 711

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGAS-KNGISKTIAVNIFELLAKFADYGFNKS 764
            SL  AD+LRRAMGKK  EEM + +E+F +GA   +GI +  A  IF+L+ KFA YGFNKS
Sbjct: 712  SLGGADLLRRAMGKKKLEEMAEHREKFRAGALSTHGIPQDKADEIFDLMEKFAGYGFNKS 771

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNT 823
            HAAAY++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA++   I   PP VN 
Sbjct: 772  HAAAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDAQKNFGITFEPPDVNR 831

Query: 824  PCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRV 881
                F+ V D  I Y L A+KG G      ++ A  +  PF SL DFC R+D +++N+R 
Sbjct: 832  GNYRFEPVTDKVIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLFDFCVRIDRQRINKRT 891

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-GTFSDKITL 940
            +E+L+ AGA D    +R  L+ S+D  + +             +IF   + G+ + +  L
Sbjct: 892  VEALIKAGAFDSIQQNRASLIASVD--RAFEFAAATEANAAQVDIFGDSEHGSATQEPEL 949

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
               +      R   E+  +GFY SGH  D     +R+   +   + + T       +A +
Sbjct: 950  VDATPWGVKERLTFEKTAVGFYLSGHLFDEVAHEVRRFCKREIGDLMDTREQQ--VIAGI 1007

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            V   +    ++G R+      + +   +A 
Sbjct: 1008 VSDFRVINGQRG-RLAIFKLDDKSDAIDAT 1036


>gi|254779972|ref|YP_003058079.1| DNA polymerase III subunit alpha [Helicobacter pylori B38]
 gi|254001885|emb|CAX30135.1| DNA polymerase III alpha subunit [Helicobacter pylori B38]
          Length = 1211

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1078 (34%), Positives = 585/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  ++      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     N+             A+K    +
Sbjct: 115  FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +KA  GL+ RL    +        Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQKEGLDFEDDASYFAHKAREGLKERL---ILVPKEKHDQYQERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++    R+ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNEVAKRVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V          + +I + L A+KGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMGGGIKEQVVLDMTDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|296332089|ref|ZP_06874553.1| DNA polymerase III DnaE [Bacillus subtilis subsp. spizizenii ATCC
            6633]
 gi|305675516|ref|YP_003867188.1| DNA polymerase III subunit alpha [Bacillus subtilis subsp. spizizenii
            str. W23]
 gi|296150860|gb|EFG91745.1| DNA polymerase III DnaE [Bacillus subtilis subsp. spizizenii ATCC
            6633]
 gi|305413760|gb|ADM38879.1| DNA polymerase III, alpha subunit [Bacillus subtilis subsp.
            spizizenii str. W23]
          Length = 1115

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1026 (37%), Positives = 583/1026 (56%), Gaps = 37/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQVHS YSLL  A ++  ++ +       ++A+TD + ++ A++F +   A GI P
Sbjct: 2    SFVHLQVHSGYSLLNSAAAVEELVSEAERLGYASLALTDDHVMYGAIQFYKACKARGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    +   DN                +VLL  +  GYQ L+++ S +    +G    
Sbjct: 62   IIGLTASVFTDDN----------GLEAYPLVLLAKSNTGYQNLLKISSVLQSKSKGGLKP 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
                 WL     EG+I +T G  G I+        + A +  L F+ +FG    Y + Q 
Sbjct: 112  ----KWLHSY-REGIIAITPGEKGYIEMLLEEGLFEQAAQAALEFQSIFGKGAFYFSYQP 166

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +G  +    Q+++L+    +P+ AT +  ++ +ED  A+  L A+     ++      +
Sbjct: 167  FKGN-QALSEQILRLSEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLTDAPAEDL 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             PD  LK   EM +I+ + PEAL+ +VEIA++C   + +    LP F            +
Sbjct: 226  -PDLDLKPLEEMQNIYREHPEALQESVEIAKQCRVDVSLGQTRLPSFPTPNG----TSAD 280

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L +  +AGL           G   + Y +RL +EL VI RMKFS YFLIV DF+++A 
Sbjct: 281  DYLTDICMAGLR-------SRFGTPDERYLRRLQYELGVIKRMKFSDYFLIVWDFMKYAH 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I  GPGRGS AGS+ AY L ITD+DP+   LLFERFLNP+R+SMPD DIDF   RRD
Sbjct: 334  DKGIVTGPGRGSAAGSLVAYVLYITDVDPINHHLLFERFLNPERISMPDIDIDFPDTRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YVQ KYG   VAQIITFG+L AKAALRDVGR   +   + D+L KLIP  P   + 
Sbjct: 394  EVIQYVQQKYGAMHVAQIITFGTLAAKAALRDVGRVFGVSPKEADQLAKLIPARPGMTLD 453

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                    +  +       + ++  +++K+EGL RH STHAAG+V+ + PL+ +VP+  +
Sbjct: 454  EAR-KQSPQLDKRLRESSLLQQVYMVARKIEGLPRHTSTHAAGVVLSEEPLTDVVPLQ-E 511

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK-SLDFLAQRGVKVDLSLIPFDDHE 607
                + +TQ+ M  +E  GL+K DFLGL+ LTL++  +     +  +K+DLS I + D +
Sbjct: 512  GHEGIYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESITSMIEKEENIKIDLSSISYRDDK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL+   T GIFQLES+GMR  L+ ++P  +EDI+A+ +LYRPGP++NI ++ +RK+G
Sbjct: 572  TFSLLSKGDTTGIFQLESAGMRSVLKRLKPSGLEDIVAVNALYRPGPMENIPLFIDRKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +  +   H  +  +L++T GVI+YQEQ+M IA  ++G+SL EAD+LRRA+ KK K+ +D+
Sbjct: 632  RAPVHYPHEDLRSILEDTYGVIVYQEQIMVIASRMAGFSLGEADLLRRAVSKKKKDILDQ 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ G  K   S   A  +++L+ KFA+YGFN+SHA AY++I  Q A++K HYP+ F
Sbjct: 692  ERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHYPLYF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +   +T  + N +KI ++  +A+   I+I+PPSVN     F V D  + YSL AIK VG 
Sbjct: 752  MCGLLTSVIGNEDKIAQYLYEAKGSGIRILPPSVNKSSYPFTVEDGAVRYSLRAIKSVGI 811

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            +  + I +A  +KPF+ L DFC RV SK +NR+ LE+L+F+GA+D FG +R  LL S+D 
Sbjct: 812  SAVKDIYKARKEKPFEDLFDFCFRVPSKSVNRKTLEALIFSGAMDEFGQNRATLLASIDV 871

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              ++ +    +  +    +F  E  +FS K    +            E+  LG YFS HP
Sbjct: 872  ALEHTELFAAD--DDQMGLFLDE--SFSIKPKYVETEELPLVDLLAFEKETLGIYFSNHP 927

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L  Y+  L   G     ++    +   + L  ++   +  +T+ G  + ++T S+   E 
Sbjct: 928  LSAYRKQLAAHGAVSILQAQQAFK-RQLSLGVLLSKIKTIRTKTGQNMAFLTLSDETGEM 986

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 987  EAVVFP 992


>gi|290961179|ref|YP_003492361.1| DNA polymerase III subunit alpha [Streptomyces scabiei 87.22]
 gi|260650705|emb|CBG73821.1| DNA polymerase III alpha chain [Streptomyces scabiei 87.22]
          Length = 1179

 Score =  713 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/1067 (31%), Positives = 531/1067 (49%), Gaps = 47/1067 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ D         IA++D  NL  A +F   A  
Sbjct: 1    MSKPP-FTHLHVHTQYSLLDGAARLKDMFDACNEMGMTHIAMSDHGNLHGAYDFFHTAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +  +   G   L +
Sbjct: 60   AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANRTGLHNLFK 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EGLI  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGELQTRLRLGQFDEAVKAASEY 178

Query: 175  KKLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG DR ++ L  H     +R    ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIDIEHRVREDLLRVGKKLGIPPLVTNDSHYTYAHEATAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             +     +S  DR +     Y    S       D  +A +         +  +       
Sbjct: 239  CIQTGKNLSDPDRFKFDGTGYYLK-STEEMYAVDSSDAWQEGCANTLLVAEQIDTSGMFE 297

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             R +  + D      E    R + + G+  R   G         D  +++++E++ I  M
Sbjct: 298  ARNLMPKFDIPEGFTEVTWFREETMRGMHRRFPDG------IPDDRMKQVEYEMDTIISM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAKK  I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIMWAKKQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+ 
Sbjct: 412  RISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471

Query: 472  VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DRL K +P D     +        S    ++    R     +P V ++++ ++ +EGL 
Sbjct: 472  GDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRSMYENEPDVKKVIDTAKGVEGLV 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ LT++
Sbjct: 532  RQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  +   +G+ +++  +P DD +T+ LL    TLG+FQ +   MR  L  MQPD  E
Sbjct: 592  DDAIKMVKANKGIDLEMLALPLDDPKTFELLCRGDTLGVFQFDGGPMRSLLRQMQPDNFE 651

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695
            DI A+ +LYRPGP+     + Y  RKN +++I  IH  ++  L+E    T G+I+YQEQV
Sbjct: 652  DISAVSALYRPGPMGMNSHINYAERKNKRQEITPIHKELEEPLEEVLAVTYGLIVYQEQV 711

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+++GYSL EAD+LRR MGKK  EE+ K    F +GA +NG S      ++++L  
Sbjct: 712  QKAAQIIAGYSLGEADILRRVMGKKKPEELAKNFTIFQAGAKRNGYSDEAIQALWDVLVP 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H+AAY ++SY TA++K +YP E++AA +T   D+ +K   +  + R+  I+
Sbjct: 772  FAGYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMKIK 831

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            ++PP+VN    +F   GD+ I + L A++ VGT     I+ +      + S  D+  +V+
Sbjct: 832  VLPPNVNESEHNFAAQGDDVILFGLEAVRNVGTNVVESIIRSRKAKGKYASFPDYLDKVE 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +   N+R  ESL+ AGA D  G++R  L    D++      V++       ++F      
Sbjct: 892  AVACNKRTTESLIKAGAFDTMGHTRKGLTAHFDSMIDNVVAVKRKEAEGQFDLFGGMGEE 951

Query: 934  FSDKITLE-----KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987
             S +                +     E+ +LG Y S HPL   + +L      G  +   
Sbjct: 952  ESSEPGFGLDVEFTTDEWEKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIAQLTG 1011

Query: 988  -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1012 GEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|226940314|ref|YP_002795388.1| DNA-directed DNA polymerase III, alpha subunit [Laribacter
            hongkongensis HLHK9]
 gi|226715241|gb|ACO74379.1| DNA-directed DNA polymerase III, alpha subunit [Laribacter
            hongkongensis HLHK9]
          Length = 1147

 Score =  713 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1039 (36%), Positives = 585/1039 (56%), Gaps = 32/1039 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P F+HL++HS +S+ +G   + + + + A ++ PA+ ++D  NLF  ++F +     G
Sbjct: 2    NTPRFIHLRLHSEFSVTDGITRIGDAVKRAALERMPALGLSDLMNLFGMVKFYKACLGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI+     ++                     +L+     GY RL EL++  Y L+Q +
Sbjct: 62   VKPIVAVDAWLENP----------ADRDQPSRCLLIAMNTAGYHRLSELLTDAYRLNQYR 111

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +   WL     E LI ++G   G   +A    + ++A+     + + F  R Y+ +
Sbjct: 112  GRAELQREWLTREACENLIFVSGAQHGDTGQALLAGNLELAQALARDWAQRFPGRCYLEI 171

Query: 187  QRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QR    +      +++ LA    LP+VAT+   FL  +D+ AH+  + +A   ++    R
Sbjct: 172  QRTGKPEADTCTERMLWLAGETGLPVVATHPVQFLDRDDFMAHEARVCIAEGEMLGNPKR 231

Query: 246  PRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R  T + Y K+  EM ++F+D+PEALEN+VEIARRC+  + +    LP F   +   + 
Sbjct: 232  VRHYTEEQYFKSTDEMAALFADVPEALENSVEIARRCNIEILLGKNFLPDFPTPDGLSL- 290

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVA 361
               ++ L  ++  GL  R+       G    +   YR+RL FEL+ I +M F GYFLIVA
Sbjct: 291  ---DDYLIKRSEEGLVERMQALYPDAGQREAEMPRYRERLKFELDTIIQMGFPGYFLIVA 347

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK N  PVGPGRGSGAGS+ A+++ ITDI+PL ++LLFERFLNP+R+SMPDFDID
Sbjct: 348  DFINWAKANGCPVGPGRGSGAGSLVAFSIGITDINPLDYALLFERFLNPERVSMPDFDID 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQD R  VI YV+ +YG + V+QI TFG++ AKA +RDVGR L +PYS  D L KLIP 
Sbjct: 408  FCQDNRWRVIEYVRERYGADAVSQIATFGTMAAKAVVRDVGRVLDLPYSFCDGLSKLIPA 467

Query: 482  DPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             P    S   A+  +   +E    +  V +L  +++KLEGL R+   HA G++I    ++
Sbjct: 468  APGKQYSLDDAVEMEPILKERLEKEEEVSQLWALAKKLEGLTRNIGMHAGGVLIAPGKIT 527

Query: 541  QLVPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--D 597
               PMY+    D  PV+  +   +E  GL+KFDFLGL+ LT++  +++++         D
Sbjct: 528  DFCPMYQASGDDASPVSMLDKGDVEDVGLVKFDFLGLRNLTIIDLAVNYIKALDPAFDLD 587

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +PF D   Y +L    T  +FQLES GM++ LE ++PD  EDIIA+++LYRPGP+ +
Sbjct: 588  LNHMPFTDPAAYRVLQQANTTAVFQLESEGMKKLLEKLKPDRFEDIIAVLALYRPGPLGS 647

Query: 658  IVVYNNRKNG--KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V +       K+++   HP +   L  T GVI+YQEQVMQI+Q++ GY+L  AD+LRR
Sbjct: 648  GMVDDFILRKAGKQEVDYFHPDLTACLDPTYGVIVYQEQVMQISQIIGGYTLGGADMLRR 707

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +  F  GA K G  K +A ++F+L+AKFA+YGFNKSH AAYAV+SYQ
Sbjct: 708  AMGKKKPEEMAKHRGIFCEGAEKKGYPKALAEHLFDLMAKFAEYGFNKSHTAAYAVVSYQ 767

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NR 834
            TAW+K HYP  F+AA+M+ E+DN ++++ F  D+    ++ +PP +N     F   D  R
Sbjct: 768  TAWLKAHYPSAFMAATMSSELDNTDQLRVFYDDSLANQLEFLPPDINESVYRFVPVDARR 827

Query: 835  IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G     HI     +   F  L DFC R D + +NRR +E+L+ AGA D 
Sbjct: 828  IRYALGAIKGTGQAAVEHIEAVRKEGGRFTDLFDFCRRTDKRIVNRRTIEALIRAGAFDT 887

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R +L+ +++     A+  ++ +      +F     + +  + + +    + + R  
Sbjct: 888  LEPNRARLIANVELAMTMAE--QEAQNANQGGLFDLLDTSAAPAVEMMQVRPWDEATRLT 945

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+  +GF+ SGHP   +   +R++                  LA  ++  + K   +G 
Sbjct: 946  EEKTAIGFFLSGHPFHAHADTVRRLVKTPLNRIAPKKEPQ--WLAGTIMGVRTKVGNRGK 1003

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + +V   +   + E +FF
Sbjct: 1004 -MAFVQLDDGTAKLEVSFF 1021


>gi|254468287|ref|ZP_05081693.1| DNA polymerase III, alpha subunit [beta proteobacterium KB13]
 gi|207087097|gb|EDZ64380.1| DNA polymerase III, alpha subunit [beta proteobacterium KB13]
          Length = 1156

 Score =  713 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1042 (39%), Positives = 604/1042 (57%), Gaps = 38/1042 (3%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
                 F+HL+ HS YS+ +G + L + +      +  ++AI+D +N+F+A++F + A + 
Sbjct: 4    NSESKFIHLRCHSEYSITDGIVRLGDYVSLAKELELESLAISDLSNIFAAVKFFKLATSN 63

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PIIG  + I   DN                ++L+    +GY  L +L+SR Y  +Q 
Sbjct: 64   GIKPIIGADVYIQNDDNRDQP----------SRLLLICQNKQGYLNLSKLLSRAYTENQY 113

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            +    I   WL      GLI L+G + G I +         A       K+ F DR Y+ 
Sbjct: 114  RDRPEIKFEWLFSDFNHGLICLSGFNFGAIGQNLLSQKKDKAIHIAKQLKEAFDDRFYLE 173

Query: 186  LQRHRGYDRYRES-----QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            +QR+    +  E       + QL Y  ++PLVAT    F+ +ED++AH+    +A   V+
Sbjct: 174  VQRYEVEKKVEEQENLVLAIAQLGYDLDIPLVATQPIQFIKKEDFQAHEAKTCIADGYVL 233

Query: 241  SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
              + RP+  T + Y K  +EM  +F D+P A+ NT+EI++RC+F  ++    LP F   E
Sbjct: 234  GDQRRPKNFTAEQYFKTPAEMAVLFEDIPSAISNTLEISKRCNFEFELGNVFLPDFPIPE 293

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY---HAQDYRQRLDFELNVIARMKFSGY 356
                       L N A+ GLE +L              + Y  RL FE+NVI +M ++GY
Sbjct: 294  G----LTVNEYLENTAIEGLEKKLKNLYPEVKDFKTQEKKYLDRLHFEINVINQMGYAGY 349

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIVADFI WAK+NN+PVGPGRGSGAGSV A+AL ITD+DPL ++LLFERFLNP+R+SMP
Sbjct: 350  FLIVADFINWAKENNVPVGPGRGSGAGSVVAFALGITDLDPLSYNLLFERFLNPERVSMP 409

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFCQ+ RD VI YV+ +YG++ V+QI+TFG++ A+A +RDVGR L +P+  VD + 
Sbjct: 410  DFDIDFCQEGRDRVIEYVKERYGYDAVSQIVTFGTMAARAVIRDVGRVLDLPFPFVDGIA 469

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KLIP +    +    I  + + ++    +  V  L +++ KLEGL R+   HA G++I  
Sbjct: 470  KLIPMELGISLKDA-IEKEEQIQQRIKNEEEVKELFDLALKLEGLVRNVGMHAGGVLIAP 528

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--- 593
              +S   P+Y     +  V+QF+   +E  GLIKFDFLGL+TLT+L  +L+   +     
Sbjct: 529  GKISDYSPLYCQEGGEGMVSQFDKDDVESIGLIKFDFLGLRTLTILSMALNNANKMRATE 588

Query: 594  --VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                + L  IP DD ET+  L+   T  +FQLES GM+  L+  +PDC EDIIALV+LYR
Sbjct: 589  GKPPIYLDDIPLDDEETFEWLSNANTTAVFQLESRGMKDMLKQAKPDCFEDIIALVALYR 648

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+D I  +  RK+G++ +   HP  + +LKET G+ +YQEQVMQIAQ ++GY+L  AD
Sbjct: 649  PGPMDLIPDFCKRKHGQQLVSYPHPSTEGILKETYGIAVYQEQVMQIAQTVAGYTLGGAD 708

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEMD Q+E FI GA++NG+ K  A N+F+LL KFA YGFNKSHAAAYA 
Sbjct: 709  LLRRAMGKKKVEEMDAQREVFIQGATQNGLEKQQASNLFDLLEKFAGYGFNKSHAAAYAK 768

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV- 830
            I+YQTA++K HY   F+AASM+ +M+N + I     D     I+++PPS+N     F+  
Sbjct: 769  IAYQTAYLKRHYTSSFIAASMSADMNNTDNIALLFDDCVLNKIKLLPPSINNSVFRFQPL 828

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D  I Y L AIKG G      I+E    + P+ SL +FC+R+D +K+NR+V+ESL+ AG
Sbjct: 829  NDKEILYGLGAIKGTGLAAIEVILEDRNSNGPYQSLFEFCARLDLRKVNRKVIESLIRAG 888

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A D    +R  LL S++     A+  + +     +++F  E     +          +S 
Sbjct: 889  AFDELEKNRASLLASINQAISLAEQSKSH--MGQDSLFGEEAN--KEVTNYVATDEWDSK 944

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
             +   E+  LGFY+SGHP   YK ++R M  +   ++  +       L+ +V++ + + T
Sbjct: 945  RQIYEEKVALGFYYSGHPFSHYKEMVRAMYPQSLRDARPSNNNQ--WLSGVVMAARNRMT 1002

Query: 1010 RKGSRIGWVTFSEPAKEYEANF 1031
            ++G  I  VT  +     +   
Sbjct: 1003 QRGK-IAIVTLDDGEGRLDMIV 1023


>gi|256825465|ref|YP_003149425.1| DNA polymerase III subunit alpha [Kytococcus sedentarius DSM 20547]
 gi|256688858|gb|ACV06660.1| DNA polymerase III, alpha subunit [Kytococcus sedentarius DSM 20547]
          Length = 1183

 Score =  713 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/1063 (33%), Positives = 535/1063 (50%), Gaps = 53/1063 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YS+L+GA  ++++         PAIA TD  ++F A EF  K+     +PI
Sbjct: 10   FVHLHNHTEYSMLDGAARIDDMFTVADEMGMPAIASTDHGSVFGAYEFWSKSRKFETKPI 69

Query: 71   IGCQLDIDMQDNL---------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            +G +  +    +                 +       + +   T EG   L    S   +
Sbjct: 70   VGVEAYLTPGTHRTDKTRVKFGDGGRNDVSGSGAYTHMTMWAETTEGMHNLFRASSLASI 129

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-D 180
             +      R+    L   G +G+I  TG  SG +           A++    F+ +FG D
Sbjct: 130  -EGFYFKPRMDRELLDRYG-KGIIATTGCPSGEVQTRLRLGQYDKAKEAAAEFRDIFGKD 187

Query: 181  RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              +  L  H    +R   + +++LA   +LPLVATN+  +  +ED +AH  L+ V   + 
Sbjct: 188  NFFCELMDHGLDIERQVRADLLKLAKELDLPLVATNDLHYTHKEDAKAHGALLCVQSGST 247

Query: 240  VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +   +R +  + + YLK+ +EM  ++ ++PEA +NT+ IA RC+           R++ +
Sbjct: 248  LMDPNRFKFDSDEFYLKSAAEMRHLWREVPEACDNTLLIAERCNVEFTEGE---GRYMPR 304

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                   +E +   ++   GL  R  +G          Y      E +VI    + GYFL
Sbjct: 305  FPCPDGHDETSWFISEVQTGLARRFPEGVPDYALKQAAY------EQDVIINKGYPGYFL 358

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD+DP+   L+FERFLNP+R SMPDF
Sbjct: 359  VVADFINWAKENGIRVGPGRGSGAGSMCAYAMGITDLDPIPHGLIFERFLNPERASMPDF 418

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF + RR EVI+YV  KYG +RVA I+T+G+++AK AL+D  R +  P++  ++L K 
Sbjct: 419  DVDFDERRRPEVIKYVTEKYGSDRVAMIVTYGTIKAKQALKDASRVMGFPFATGEKLTKA 478

Query: 479  IPN-DPAHPVSLQAIADDS--------RFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            +P       + L  I D+          FRE    DP    + + +  LEGL R    HA
Sbjct: 479  MPPAVMGKDIPLSGIFDEKHPRYAEAIDFRELHANDPEAREVFDTAVGLEGLKRQWGVHA 538

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS---L 586
            AG+++   PL  L+P+ R       +TQF+    E  GL+K DFLGL+ LT+L  +   +
Sbjct: 539  AGVIMASEPLIDLIPIMRREADGQIITQFDYPSCETLGLVKMDFLGLRNLTILDDAIANI 598

Query: 587  DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            +   +  + +D       D   Y LL    TLG+FQL+  GMR  L  MQPD  EDI A 
Sbjct: 599  EMNREETIDLDALSKDMTDPAAYKLLARGDTLGVFQLDGGGMRSLLRLMQPDNFEDISAA 658

Query: 647  VSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQIAQ 700
            ++LYRPGP+  +    +  RKNGK+ +  IHP     ++P+LK T G+IIYQEQVM+IAQ
Sbjct: 659  LALYRPGPMGANAHTNFALRKNGKQPVDYIHPELTEALEPILKMTYGLIIYQEQVMEIAQ 718

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
             L+GY+L  AD+LRRAMGKK KE +D +   F +G   NG SK     ++ +L  F+DY 
Sbjct: 719  KLAGYTLGNADLLRRAMGKKKKEVLDAEYVNFEAGMLANGYSKDAVETLWGILLPFSDYA 778

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNK+H AAY V+SY TA++K +Y  E++AA +T   D+ +K   +  + R+  I+++PP 
Sbjct: 779  FNKAHTAAYGVVSYWTAYLKANYRAEYMAALLTSVRDDKDKSALYLGECRRMGIKVLPPD 838

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNR 879
            VN    +F      I + L AI+ VG    R I+    +   F S EDF  +  +   N+
Sbjct: 839  VNESIANFAAVGQDIRFGLEAIRNVGGNVVRAIVATREEKGKFTSFEDFLRKCPAVVCNK 898

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-- 937
            R ++SL+ AGA D  G+ R  L    +         +K +    E++FA   G   D   
Sbjct: 899  RTIDSLIKAGAFDDLGHQRQALATVHEAYVDALVGEKKEQERGQESLFASLMGDGGDDAS 958

Query: 938  -----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA---T 989
                   +      +       E+ +LG Y S HPL   +  L +          +    
Sbjct: 959  SIGGMPAIPDL-EWDKQTLLAFEREMLGLYVSDHPLFGIEHALSRASDTSIAHLNSEDGR 1017

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              G  + +A ++     K+ ++G      T  +     E  FF
Sbjct: 1018 PDGAEVTIAGLITQVVTKRNKRGELWAIATVEDLEGSIECLFF 1060


>gi|194288945|ref|YP_002004852.1| DNA polymerase III subunit alpha [Cupriavidus taiwanensis LMG 19424]
 gi|193222780|emb|CAQ68783.1| DNA polymerase III, alpha subunit [Cupriavidus taiwanensis LMG 19424]
          Length = 1170

 Score =  713 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/1057 (39%), Positives = 616/1057 (58%), Gaps = 49/1057 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P FVHL++HS YS+++G + L++ +   AAD   A+A+TD  N F  + + ++A   G
Sbjct: 2    SAPRFVHLRLHSEYSIVDGIVRLDDAVKAAAADGMGALALTDLANAFGLIRYYKEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++P++G  + +   ++                ++LLV    GY  L  L+SR +L +Q +
Sbjct: 62   VKPVVGADVWLTNAEDRDKPA----------RLLLLVQDRRGYLNLCMLLSRAWLGNQHR 111

Query: 127  QSVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                I  +W QE G +      GLI L+G   G I  A    ++  A +    +  +F  
Sbjct: 112  GRAEIDPAWFQEPGEDDLPLATGLIALSGAMGGDIGMALANGNADGARRAAQHWAAVFPQ 171

Query: 181  RLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            R Y+ LQR  H G D Y   Q VQLA + +LP+VAT+   F++ +DY AH+  + +A   
Sbjct: 172  RFYIELQRAGHAGTDAYV-QQAVQLAASLQLPVVATHPVQFMTPDDYTAHEARVCIAEGE 230

Query: 239  VVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            +++   R  R T D Y K + EM ++F+D+P ALEN VEIARRC+  L++  P LP F  
Sbjct: 231  LLANPRRTRRFTTDQYFKTQDEMCALFADIPSALENAVEIARRCNLTLELGKPRLPLFPT 290

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
             +   +    ++ L   A  GLE RLA        +     +Y  RL+FE   I +M F 
Sbjct: 291  PDGMSL----DDYLVFMAKEGLEKRLAVLFPDEAVREAKRPEYYARLEFETGTIIKMGFP 346

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+S
Sbjct: 347  GYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYALLFERFLNPERVS 406

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y  VD 
Sbjct: 407  MPDFDIDFCQHGRDRVITYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYGFVDG 466

Query: 475  LCKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            + KLIP  P   V+++    ++    E    +  V +LLE++Q++EG+ R+   HA G++
Sbjct: 467  IAKLIPFKPGKLVTIEEAKKEEPLLTERERNEEEVRQLLELAQRVEGMTRNVGMHAGGVL 526

Query: 534  IGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            I    L+   P+Y     +      V+Q++   +E AGL+KFDFLGL TLT+L  +  ++
Sbjct: 527  IAPGKLTDFCPLYTQGGQNDGMSGVVSQYDKDDVEAAGLVKFDFLGLTTLTILDWAERYI 586

Query: 590  AQ---RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             +        + S IP DD   + +L T  T+ +FQLES GM+  L+  +PD  EDIIAL
Sbjct: 587  RRLDPSKADWNCSHIPLDDGPAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIAL 646

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            V+LYRPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYS
Sbjct: 647  VALYRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYS 706

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L  AD+LRRAMGKK  EEM + +  F  GA KNG+S   A +IF+L+ KFA YGFNKSHA
Sbjct: 707  LGGADLLRRAMGKKKPEEMAQHRVMFREGADKNGLSAQQADDIFDLMEKFAGYGFNKSHA 766

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA+++Y TAW+K H+P EF+AA+M+L MD+ +K+K   +D +   I ++PP VN    
Sbjct: 767  AAYALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYEDCKLNKIAVLPPDVNASEY 826

Query: 827  DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
             F   D   I Y L  IKG G      I+ A  ++PF  L DFC RVD +++NRR +E+L
Sbjct: 827  RFAPTDPKTIRYGLGGIKGSGQGAIEDILRAREERPFTDLFDFCERVDRRQVNRRTIEAL 886

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFS 944
            + AGA D    +R QLL S+    + A+  +K  +    ++F          +  L    
Sbjct: 887  IRAGAFDSLNDNRAQLLASVPIAMEAAE--QKAESANQVSLFDLMGDAGDAHRPELLDEP 944

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------GNNIR-- 996
              +     + E++ LG+YFSGH  D Y+  +R+            ++      G ++R  
Sbjct: 945  RWSPKRTLQEEKQALGYYFSGHLFDAYRDEVRRFNKGTLAGLEKEVQGNGGGFGRDVRGK 1004

Query: 997  -LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +A ++   + + T++G  +  VT  +     E   F
Sbjct: 1005 TIAGVISGMRTQMTQRGK-MLIVTLDDGTGLVEMTVF 1040


>gi|255007521|ref|ZP_05279647.1| DNA polymerase III alpha subunit [Bacteroides fragilis 3_1_12]
 gi|313145215|ref|ZP_07807408.1| DNA polymerase III alpha subunit [Bacteroides fragilis 3_1_12]
 gi|313133982|gb|EFR51342.1| DNA polymerase III alpha subunit [Bacteroides fragilis 3_1_12]
          Length = 1264

 Score =  713 bits (1839), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1146 (30%), Positives = 563/1146 (49%), Gaps = 134/1146 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF----------- 58
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F+  EF           
Sbjct: 3    DFVHLHVHTQYSLLDGQASVSALVDKAIKDGMKGIAVTDHGNMFAIKEFTNYVNKKNGGP 62

Query: 59   ---------SQKACAAG-------------------------IQPIIGCQLDIDMQDNLK 84
                        A  AG                          +PIIGC++ +       
Sbjct: 63   KGEIKDLKKWIAAIEAGEVDCADKEAEIADCKAKIVEAEGRLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVSR +         R   + L++   EGL
Sbjct: 120  MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKG-YYMRPRTDRNELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+              
Sbjct: 178  IICSACLGGEVPKKITQGLLAEAEEAIQWYKNLFGDDYYLEMQRHKATVPKANHEAYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ A  + + L+ TN+  F++EE  EAHD L+ ++    +   +R   T   +
Sbjct: 238  VNVNKHLIEYAKKYNVKLICTNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMYYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    ++        
Sbjct: 298  MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 357

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L+     G +      
Sbjct: 358  KDLFDEFTQDENGNVVLSEEAAKDKIKRLGGYDKLYRIKLEADYLKKLTFDGAKKFYGDP 417

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                   + + ++RL FEL+++  M F GYFLIV DFI   +   + +GPGRGS AGS  
Sbjct: 418  L------SPEVKERLVFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAV 471

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AY L IT IDP+++ LLFERFLNPDR+S+PD DIDF  D R EV+R+V  KYG E+VA I
Sbjct: 472  AYCLQITKIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGQEKVAHI 531

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL- 503
            IT+G++  K A++DV R  ++P ++ DRL KL+P+           AI      + A   
Sbjct: 532  ITYGTMATKLAIKDVARVQKLPLAESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEAS 591

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFN 559
             DP V   ++ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+ 
Sbjct: 592  PDPLVRDTMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYE 651

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTL 618
               IE  GLIK DFLGLKTL++++++++ +   +G+++D+  I  +D  TY L +   T+
Sbjct: 652  GSVIEDTGLIKMDFLGLKTLSIIKEAVENIRLSKGMELDIDSISIEDPATYKLYSDGRTI 711

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P++
Sbjct: 712  GTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVM 771

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  K
Sbjct: 772  EKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRK 831

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N
Sbjct: 832  NGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSN 891

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EA 856
            +  I K   + +   +Q + P VN   + F    +  I + L A+KGVG    + IM E 
Sbjct: 892  ITDITKLMDECKAMGVQTLGPDVNESNLKFTANRNGNIRFGLGAVKGVGEAAVQSIMEER 951

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNI 908
              + PF  + DF  RV+    N++ +E L  AG  D F    R Q           L+ +
Sbjct: 952  RENGPFKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNAKGETFLETL 1011

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +Y    + ++     ++F  +         +      N   R   E+ ++G Y S HPL
Sbjct: 1012 MRYGNRYQADKAAAVNSLFGGDNVIDIATPEILPAERWNDLERLNKERELVGIYLSAHPL 1071

Query: 969  DVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            D Y  +L  +      E    A + G  I +  +V S ++  ++ G+  G     + +  
Sbjct: 1072 DEYAIVLEHVCNTRMIELDDKAALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGS 1131

Query: 1027 YEANFF 1032
             E  FF
Sbjct: 1132 AEIPFF 1137


>gi|225619527|ref|YP_002720784.1| DNA polymerase III subunit alpha [Brachyspira hyodysenteriae WA1]
 gi|225214346|gb|ACN83080.1| DNA polymerase III, alpha subunit [Brachyspira hyodysenteriae WA1]
          Length = 1236

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1035 (35%), Positives = 576/1035 (55%), Gaps = 34/1035 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNI--------------LDKIAADQQPAIAITDTNNLFSA 55
            SFVHL VH+ YS+L+GA  + ++              +D+      P IA+TD  N+F A
Sbjct: 2    SFVHLHVHTQYSILDGAARIKSLYSKKDKTKRLIPGLIDRAKELGMPGIAMTDHGNMFGA 61

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            +EF  +A   GI PIIGC++ +  +       +  +   +   ++LL    EGY  L +L
Sbjct: 62   MEFFSEAKDKGIIPIIGCEVYVAPKTRFDKKIEN-SEEKSAMHLILLAKDKEGYNNLCKL 120

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            V+  Y  +      R+    +++   +GLI L+    G I  A      + A K    +K
Sbjct: 121  VTFGYT-EGFYYRPRVDHELIEKY-NKGLICLSACMGGEIPIAIRKKDYKQASKLAEYYK 178

Query: 176  KLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
             +FG+  Y+ LQ H   +     S + QLA  H + LV TN+  ++S+ED +AH++L+A+
Sbjct: 179  SIFGNDFYIELQDHNIPEEKALNSALYQLAKHHNIELVVTNDVHYVSKEDAKAHEILLAI 238

Query: 235  AHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
                 +    R +  + + +LK   EM+  F+ LP+A ENTV+IA +C     ++     
Sbjct: 239  QTKATLDSPRRYKFPSNEFHLKTEEEMMKSFAKLPKAFENTVKIAEQCQ---DLNIMTKT 295

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             ++        + E   LRN  + GL               ++   RL+ EL VI +M F
Sbjct: 296  YYMPNYELPNGETETTALRNMCMDGLNKYYNNN------IPKEAMDRLEMELGVIGKMGF 349

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFL+V DFI +A+ +++ VGPGRGS AGS+ A+A  IT ++PL ++LLFERFLNP+R 
Sbjct: 350  EGYFLVVQDFINYARNHDVAVGPGRGSAAGSIVAFATGITKVNPLDYNLLFERFLNPERK 409

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPD D+DF  D+R+ +I YV+ KYG + V+QI TFG+L  ++ +RDV R + +  +  D
Sbjct: 410  SMPDIDVDFQDDKREVIIDYVKEKYGKDNVSQIATFGALGGRSVIRDVCRVMGIDLATAD 469

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            RL K IP+D    V +    D +   +    +  +  + EIS +L+GL R+   HAAG++
Sbjct: 470  RLAKSIPDDVKRVVDIYDHPDCAALVKEIEGNRELKNMYEISTRLDGLVRNVGLHAAGVI 529

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            I   P+  L P+Y+D ++     Q+ M ++E AGLIK DFLG+K L L++ ++  +  R 
Sbjct: 530  ISSHPIMDLAPVYQDSKTGTRACQYEMTYVESAGLIKMDFLGIKNLRLIKDAIKDIKDRY 589

Query: 594  -VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +++D+  IP DD   Y +     T G+FQ ES GMRQ L  +QP   +D+++ V+LYRP
Sbjct: 590  GIEIDIDKIPLDDEAVYDIFRKADTGGVFQFESPGMRQMLINIQPTGFDDLVSSVALYRP 649

Query: 653  GPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GP+++ +   Y +RKN +++IV  HP ++P+LKE+QGV+IYQEQ+M I++++ G++ +EA
Sbjct: 650  GPLNSGMDKDYADRKNKRKEIVYKHPDLEPILKESQGVLIYQEQIMAISRVIGGFTAAEA 709

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D LR+AMGKKI E+M+  +E+FI G  + G  K +   +F+ +  FA+YGFNKSH+  YA
Sbjct: 710  DDLRKAMGKKIVEKMNSMEEKFIKGGLERGYDKELLTYLFDTMKGFAEYGFNKSHSVCYA 769

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +I+YQ A++K HYP+E+  A +   + + +KI  +  + +Q NI+I+  SV      F  
Sbjct: 770  LIAYQEAYIKAHYPMEYYVALLNTVIADTDKISLYLNEIKQKNIEIVTASVFESDALFSQ 829

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             D +I Y+L A+KGVG   A  I E    +  F +LEDF  RVD   +NR+V E+L+  G
Sbjct: 830  KDGKIVYALHAVKGVGIHAALAIQEEREKNGQFKNLEDFVKRVDVHLVNRKVYETLIKCG 889

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVEN 947
            A   FG++   LL SLD I  +A   +K   +    +F    E  + S  + +EK     
Sbjct: 890  AFSEFGHTESALLSSLDAILAHASNYQKETLSGQTMLFDSMSEDDSGSASLVIEKQVEYA 949

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            S++  ENE+ VLGF    HP   Y   +         +       +   L  +V+S  + 
Sbjct: 950  SNILMENEKEVLGFSLRYHPFARYITKIDYKYFHNTLDIDNLKDKDEFLLPCVVMSASET 1009

Query: 1008 KTRKGSRIGWVTFSE 1022
             T+K + +  +   +
Sbjct: 1010 TTKKNTPMITLKVID 1024


>gi|34539911|ref|NP_904390.1| DNA polymerase III subunit alpha [Porphyromonas gingivalis W83]
 gi|34396222|gb|AAQ65289.1| DNA polymerase III, alpha subunit [Porphyromonas gingivalis W83]
          Length = 1228

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1110 (32%), Positives = 570/1110 (51%), Gaps = 99/1110 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            FVHL VHS +SLL+G  ++N+++DK  AD  P IA+TD   +F   EF            
Sbjct: 4    FVHLHVHSQFSLLDGQAAINDLVDKAIADGMPGIALTDHGAMFGIKEFYNYVEKKNSGHN 63

Query: 67   --------------------------------------------IQPIIGCQLDIDMQDN 82
                                                         +PI+GC+     +  
Sbjct: 64   ATLKDCRRELDQLNDSKSADMLTDEERNRIVKLQQKIEETKKLLFKPILGCEAYCARRTR 123

Query: 83   LKMTNQGKTPF-------PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
                NQ   P+        +   ++LL     GY+ LI++VS  +   Q     RI    
Sbjct: 124  FDKDNQIPDPYHPRRSIDASGWHLILLAKNLRGYKNLIKMVSYSWTEGQ-YYRPRIDKEL 182

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR----- 190
            LQ+   EG+I+ +    G I +         AE+ +L FK+LFGD  Y+ +QRH      
Sbjct: 183  LQKYH-EGIIVSSACLGGEIPQHIMAGEIAKAEEAILWFKELFGDDYYLEIQRHETHNPL 241

Query: 191  ------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                     +     +++L     + ++ATN+  F +EED EAHD L+ ++    +   +
Sbjct: 242  GNQDVFPQQQRVNRVILELGKKLGVKVIATNDVHFCNEEDAEAHDRLICLSTGKDLDDPN 301

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R R T   ++K  +EM +IF DLPE L NT+EI  +       +  ++P F         
Sbjct: 302  RMRYTKQEWMKTTAEMSAIFEDLPETLSNTLEILDKVELYSIDNKALMPDFPIP---PEY 358

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K++++ LR     G   +  +        + + ++R+DFEL  I  M F GYFLIV DFI
Sbjct: 359  KDDDDYLRFLTYEGARRKYGEDL------SDEIKERIDFELETIKGMGFPGYFLIVQDFI 412

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
              A+   + VGPGRGS AGS  AY L ITDIDP+++ LLFERFLNPDR+SMPD D+DF  
Sbjct: 413  AAARSMGVSVGPGRGSAAGSAVAYCLGITDIDPIKYHLLFERFLNPDRISMPDIDVDFDD 472

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP- 483
            D R E++R+V  KYG ERVA IIT+G++  K++++DV R  ++P  + +RL KL+P+   
Sbjct: 473  DGRAEILRWVTEKYGKERVAHIITYGTMATKSSIKDVARVQRLPLLESNRLAKLVPDKIP 532

Query: 484  --AHPVSLQAIADDSRFREARLADPS-VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                    +AI      ++A L+    +   L+ +Q LEG  R+   HA GI+IG   +S
Sbjct: 533  GEKKVNLKKAIEFVPELKQASLSSDKVMRDTLKYAQMLEGNVRNTGVHACGIIIGKTDIS 592

Query: 541  QLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
             +VP+      D      VTQ+    IE+ GLIK DFLGLKTL++++++L  + +R    
Sbjct: 593  DVVPVSTAPDKDTKEELLVTQYEGSVIEQTGLIKMDFLGLKTLSIIKEALVNIKRRHGID 652

Query: 597  -DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             ++  IP DD  TY L +   T+G FQ ES GM++ L  +QP   ED+IA+ +LYRPGP+
Sbjct: 653  LNIDTIPLDDPLTYKLYSDGRTIGTFQFESGGMQKYLRELQPSAFEDLIAMNALYRPGPM 712

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +  RK+G+E I    P ++  LKET GV +YQEQVM +++ L+G++  ++D LR+
Sbjct: 713  DYIPSFIARKHGREPIDYDLPEMEEYLKETYGVTVYQEQVMLLSRKLAGFTRGQSDELRK 772

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK+ E+M+  K +F+ G +KNG  + +   I+    KFA Y FNKSHA  Y+ ++YQ
Sbjct: 773  AMGKKLIEKMNVLKVKFLEGGNKNGHPEEVLEKIWTDWEKFASYAFNKSHATCYSWVAYQ 832

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNR 834
            TA++K +YP E++A +++  ++N+ +I K   + +   I ++ P VN   + F V  +  
Sbjct: 833  TAYLKANYPAEYMAGALSRNLNNITEITKLMDECKSMKIGVLVPDVNESEMKFSVNANGD 892

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I + L+A+KGVG+     I+    A+  +  + DF  R++    NR+ +ESL  AGA D 
Sbjct: 893  IRFGLSAVKGVGSGAVEQIIAEREANGLYKDIFDFVERINLSACNRKTMESLALAGAFDS 952

Query: 894  FGYSRMQLLQS---------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            F  SR + +           +  + +Y   V++ + ++  ++F  E+     +       
Sbjct: 953  FALSREEYMAPPLTGREESYIQALMRYGSVVQEEKHSQSNSLFGEEEDLMIPRPQPSPTE 1012

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIRGNNIRLAAMVV 1002
              N   R   E+ ++G Y S +P+  Y+ IL         +     ++ G N+ LA +V 
Sbjct: 1013 PWNDLERLNKERELVGLYLSSNPMAQYQVILDHYCNTHAADLTDPDSLVGKNLVLAGIVT 1072

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               Q  +R  +    +T  + +   E   F
Sbjct: 1073 KAFQGISRSNNPYSKITLEDLSGTGEIPLF 1102


>gi|317011593|gb|ADU85340.1| DNA polymerase III subunit alpha [Helicobacter pylori SouthAfrica7]
          Length = 1211

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1078 (34%), Positives = 586/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++K+ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKKTKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----ASKETKQRFHLCLFAKNQEGYENLMYLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     N+             A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRRYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +KA  GL+ RL    +      + Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLDFEDDASYFAHKAREGLKERL---ILVPKEKHEQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNDIAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHQISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V          + +I + L AIKGVG+   ++I+E     
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGSEPIKNIIEERTKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + +LEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKNLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F   +    +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMESETREQVILDMVDLGEHDAKTLLEYEYETLGIHVSGNPLDEFKEEVK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|282859320|ref|ZP_06268432.1| DNA polymerase III, alpha subunit [Prevotella bivia JCVIHMP010]
 gi|282587900|gb|EFB93093.1| DNA polymerase III, alpha subunit [Prevotella bivia JCVIHMP010]
          Length = 1241

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/1122 (30%), Positives = 541/1122 (48%), Gaps = 109/1122 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66
             ++HL VH+ YS+L+G   +NN++DK   D    +AITD   +F   EF+          
Sbjct: 3    DYIHLHVHTHYSILDGQSKINNLVDKAIKDGMKGMAITDHGVMFGIKEFADYCAKKNKER 62

Query: 67   -------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                    +PI GC++ +  +       +      +   +V+L     GY+ LI+LVS  
Sbjct: 63   KANGEEPFKPIFGCEMYVARRKQTDKVKE--MHDNSGYHLVVLAKNYNGYKNLIKLVSNA 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            + +D      R     L++   E LI+ T   +G I         + A +  L +K LFG
Sbjct: 121  W-VDGYYYRPRTDREQLEKYH-EDLIVCTACLAGEIPAKIRKGDIEGAREACLWYKNLFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            +  Y+ LQRH   D             +     ++Q +  + + LV TN+S F  +E  E
Sbjct: 179  EDFYLELQRHEVTDPTLIANREAYPLQQQVNKVLMQFSKEYGIKLVCTNDSHFEDKETAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++ +  +    R R +   + K R EM  +F D+PEA+ NT+EI  +      
Sbjct: 239  AHDHLLCLSTNEDLDDPKRMRYSKQEWFKTREEMNQVFEDVPEAMANTIEILNKVEMYNI 298

Query: 287  VHAPILPRFIEKECDDIQKE---------------------------------------- 306
             H PI+P F   E    ++E                                        
Sbjct: 299  DHGPIMPFFPIPEDFGTEEEWRQKFSEEDLLKEFTSDENGENPLPEDEAKKVIERLGGYE 358

Query: 307  -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E + L   +  G +             +++   R+ FEL+V+  M F GYFLI
Sbjct: 359  KIYRIKFEADYLAKLSYDGAKRLYGDQL------SEEVDSRIRFELHVMKTMGFPGYFLI 412

Query: 360  VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V DFI  A+    + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD 
Sbjct: 413  VQDFINAAENELGVIVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R +V+++V +KYGHE  A IIT+ ++  K +++DV R  ++P  + + LCK 
Sbjct: 473  DTDFDDDGRGKVLQWVMDKYGHENCAHIITYSTMATKNSIKDVARVEKLPLDRSNALCKA 532

Query: 479  IPNDPAHPVSLQ---AIADDSRFREAR-LADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP+     + +    AI+     +EA    +      ++ ++ LEG  R    HA G +I
Sbjct: 533  IPDRLPDGLKMNLKNAISCTPMLQEAMVSENERERNTIKYAKMLEGTVRGTGIHACGFII 592

Query: 535  GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               P+   VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ L+++   +
Sbjct: 593  CRNPIDDWVPVSTATDPDYPDQKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVI 652

Query: 590  AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             Q    ++D+  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +
Sbjct: 653  KQTTGKEIDIEKIPIDDELTYQLYQKGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNA 712

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RK+    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  
Sbjct: 713  LYRPGPMDYIPDFIKRKHDPTLVQYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E+D LR+AMGKK K  +D  K +FI    +NG    +   I+    KFA Y FNKSHA  
Sbjct: 773  ESDALRKAMGKKKKNIVDAMKPKFIKQGQENGHDPKVLEKIWSDWEKFASYAFNKSHATC 832

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ ++YQTA++K HYP E++AA MT     + +I K  ++ +   I+ + P VN   + F
Sbjct: 833  YSWVAYQTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKALKIETLGPDVNESQIGF 892

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V     I + L+AIKG+GT  A +I++    + P+  + DF  RVD   +NR+V+E+L 
Sbjct: 893  GVNKRGEIRFGLSAIKGIGTGAAENIVKERETNGPYKDIFDFVERVDLSSINRKVIENLA 952

Query: 887  FAGALDCFG-YSRMQLL--------QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            ++G  D  G  +R +            LD + +Y Q  + ++     ++F         +
Sbjct: 953  YSGGFDSLGTITRREEYFGVNSKGEAFLDTLLRYGQLYQTSKAEAANSLFGGFDSIPVAR 1012

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------ 991
              +       +  +   E+ ++G Y S HPLD +  +L  +      +            
Sbjct: 1013 PAVPPAEAWANIEKLNKERELVGIYLSAHPLDEFSVVLNHLCNTHCSQISRNADMVALAK 1072

Query: 992  GNNIRLAAMVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFF 1032
               +    +V + ++  + + G    +VT  +     E   F
Sbjct: 1073 TEELTFGGIVTNVREAFSQKTGKPYAFVTIEDFEGVGEIALF 1114


>gi|21220545|ref|NP_626324.1| DNA polymerase III subunit alpha [Streptomyces coelicolor A3(2)]
 gi|256788317|ref|ZP_05526748.1| DNA polymerase III subunit alpha [Streptomyces lividans TK24]
 gi|289772211|ref|ZP_06531589.1| DNA-directed DNA polymerase subunit III alpha [Streptomyces lividans
            TK24]
 gi|14194704|sp|Q9Z618|DPO3A_STRCO RecName: Full=DNA polymerase III subunit alpha
 gi|4324655|gb|AAD16978.1| DNA polymerase III alpha subunit [Streptomyces coelicolor A3(2)]
 gi|5596809|emb|CAB51456.1| DNA polymerase III alpha chain [Streptomyces coelicolor A3(2)]
 gi|289702410|gb|EFD69839.1| DNA-directed DNA polymerase subunit III alpha [Streptomyces lividans
            TK24]
          Length = 1179

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/1067 (31%), Positives = 536/1067 (50%), Gaps = 47/1067 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ D         IA++D  NL  A +F   A  
Sbjct: 1    MSKPP-FTHLHVHTQYSLLDGAARLKDMFDACNEMGMSHIAMSDHGNLHGAYDFFHSAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +  + ++G   L  
Sbjct: 60   AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTMWATNSKGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EG++  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETISQW-SEGIVASTGCPSGEVQTRLRLGHFDEALKAAADY 178

Query: 175  KKLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG DR ++ L  H     +R    ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIEIEHRVRDGLLEIGRKLGIPPLVTNDSHYTYAHEATAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             +     +S  DR R     Y    S       D  +A +      R  + ++       
Sbjct: 239  CIQTGKNLSDPDRFRFDGTGYYLK-STDEMYAIDSSDAWQEGCANTRLIAEMIDTTGMFE 297

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             R +  + D      E    + +   G+E R   G        +D +++ ++E++VI +M
Sbjct: 298  KRDLMPKFDIPEGFTEITWFQEEVRRGMERRFPGGV------PEDRQKQAEYEMDVIIQM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAK   I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+ 
Sbjct: 412  RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471

Query: 472  VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DRL K +P D     +        +    ++    R    ++P V ++++ ++ +EGL 
Sbjct: 472  GDRLTKAMPADVLGKGIDLNGITDPTHPRYSEAGEIRSMYESEPDVKKVIDTAKGVEGLV 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ LT++
Sbjct: 532  RQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  +   +G+ +DL  +P DD  T+ LL    TLG+FQ +   MR  L  M+PD  E
Sbjct: 592  DDAVKMVKSNKGIDLDLLSLPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFE 651

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695
            DI A+ +LYRPGP+       Y  RKNG ++I  IH  ++  L+E    T G+I+YQEQV
Sbjct: 652  DISAVSALYRPGPMGMDSHTNYALRKNGLQEITPIHKELEEPLQEVLAVTYGLIVYQEQV 711

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+++GYSL EAD+LRR MGKK  +E+ K    F +GA KNG S      ++++L  
Sbjct: 712  QKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFVLFQAGARKNGYSDEAIQALWDVLVP 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H+AAY ++SY T ++K +YP E++AA +T   D+ +K   +  + R+  I+
Sbjct: 772  FAGYAFNKAHSAAYGLVSYWTGYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMGIK 831

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            ++PP+VN    +F   GD+ I + L+A++ VGT     I++       + S  D+  +V+
Sbjct: 832  VLPPNVNESMSNFAAQGDDVILFGLSAVRNVGTNVVESIIKCRKAKGKYASFPDYLDKVE 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F      
Sbjct: 892  AVVCNKRTTESLIKAGAFDEMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGMGDE 951

Query: 934  FSDKITLE-----KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987
             SD+              + +     E+ +LG Y S HPL   + +L      G  +   
Sbjct: 952  QSDEPGFGLDVVFGEDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGISQLTG 1011

Query: 988  -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1012 GDFGDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSLECMFFP 1058


>gi|15612418|ref|NP_224071.1| DNA polymerase III subunit alpha [Helicobacter pylori J99]
 gi|11132624|sp|Q9ZJF9|DPO3A_HELPJ RecName: Full=DNA polymerase III subunit alpha
 gi|4155965|gb|AAD06929.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
          Length = 1211

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1078 (34%), Positives = 586/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     N+             A++    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +KA  GL  RL    +      + Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLSFEDDASYFAHKAREGLRERL---ILVPEEKHEQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNEVAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V          + +I + L A+KGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F   +G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMEGGIKEQVVLDMVDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|238063859|ref|ZP_04608568.1| DNA polymerase III, alpha subunit [Micromonospora sp. ATCC 39149]
 gi|237885670|gb|EEP74498.1| DNA polymerase III, alpha subunit [Micromonospora sp. ATCC 39149]
          Length = 1179

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/1068 (32%), Positives = 525/1068 (49%), Gaps = 56/1068 (5%)

Query: 10   SFVHLQVHSSYSLLEG------ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            SF HL VH+ YS+L+G        S             PA+A+TD  N+  A +F ++A 
Sbjct: 4    SFAHLHVHTEYSMLDGCGPGSRTSSPRP-----TGSGMPAVAMTDHGNMHGANDFYKQAM 58

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLI 113
            AAGI PI+G +  +  +                    +    +  + +  +   G   L 
Sbjct: 59   AAGITPILGVEAYVAPESRYHKARVKWGRPEQKSDDVSGNGAITHMTMWAANKTGLHNLF 118

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             L SR  +     +  R+ +  + E   EG++  TG  SG +           A K    
Sbjct: 119  TLNSRASMEGHYVKWPRMDMELIAE-HAEGIMATTGCPSGAVQTRLRLGQFDEALKVASA 177

Query: 174  FKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            ++ +FG D  ++ L  H    +R     + ++     +P V TN+S +  E   EAHDVL
Sbjct: 178  YQDIFGRDNYFLELMDHGLDIERRVRDGLTEIGKKLGIPPVVTNDSHYTHEAQAEAHDVL 237

Query: 232  MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
            + V   + ++  +R R     Y    +E +         LE           +       
Sbjct: 238  LCVQTGSNIADPNRFRFEGGGYFIKSAEQMRAVDSSQLWLEGCRNTLLVAEKVDPAGMFE 297

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
                + +      + EE+  R +   GL  R   G         +Y      EL VI +M
Sbjct: 298  FHNLMPRFPVPEGETEESWFRKETFKGLARRFPGGVPEGHVVQAEY------ELGVIIQM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFL+VADFI WAK   I VGPGRGS AGS+ AYAL ITD+DP+   L+FERFLNP+
Sbjct: 352  GFPSYFLVVADFIGWAKSQGIAVGPGRGSAAGSLVAYALGITDLDPIPHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVI+YV +K+G ++VAQI TFG+++AKAA++D  R L  PY+ 
Sbjct: 412  RVSMPDVDIDFDERRRGEVIKYVTDKWGEDKVAQIATFGTIKAKAAIKDSARVLGYPYAV 471

Query: 472  VDRLCKLIPN-DPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DR+ K +P       +             A+    R    +DP V ++++ ++ +EGL 
Sbjct: 472  GDRITKAMPPAVMGKDIPLSGIFDPKHPRYAEAGEIRGLYESDPDVKKVIDTAKGIEGLI 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++   P+ + +P+ R     + +TQF+    E  GL+K DFLGL+ LT++
Sbjct: 532  RQTGVHAAGVIMSAEPIIEHIPLMRRDSDGVIITQFDYPTCESLGLLKMDFLGLRNLTII 591

Query: 583  QKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++       G  +DL  +  DD   Y LL    TLG+FQL+   MR  L  M+PD  E
Sbjct: 592  DDAVKNIQLNHGKDLDLLGLDLDDKAAYELLARGDTLGVFQLDGGPMRSLLRLMKPDNFE 651

Query: 642  DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPML----KETQGVIIYQEQV 695
            DI A+++LYRPGP+  D+   Y  RKNG ++I  IHP ++  L      T G+I+YQEQV
Sbjct: 652  DISAVLALYRPGPMGVDSHTNYALRKNGLQEITPIHPELEEPLREILAPTHGLIVYQEQV 711

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+L+GY+L +AD+LRRAMGKK KE +DK+   F  G  + G S      ++++L  
Sbjct: 712  QRAAQILAGYTLGQADLLRRAMGKKKKEILDKEFVPFRDGCRERGYSDEAIQAVWDVLVP 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H+AAY ++SY TA++K HYP E++AA +T   D+ +K+  +  + R+  IQ
Sbjct: 772  FAGYAFNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKMALYLSECRRMGIQ 831

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874
            ++PP VNT    F      I + LAAI+ VG      IM    D   +    DF ++VD+
Sbjct: 832  VLPPDVNTSAGPFTPVGKDIRFGLAAIRNVGANVVASIMRCRQDKGEYADFYDFLAKVDA 891

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA------ 928
               N++ +ESL+ AGA D  G++R  LL    +       V++       ++F       
Sbjct: 892  VVCNKKTIESLIKAGAFDVMGHTRKGLLAVHADAIDAYADVKRKEAVGQYDLFGAGFGDA 951

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
               G  +  +     +  +   +   E+ +LG Y S HPL   + +L             
Sbjct: 952  EAAGGSTTVMPTIGEAEWDKRDKLAFEREMLGLYVSDHPLFGLEHVLGAAADTTIAALSE 1011

Query: 989  ---TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  G  + LA ++   Q++ T++G      T  + A   E  FFP
Sbjct: 1012 EGTVPDGAVVTLAGILSGVQRRVTKQGRAWASATLEDLAGGVETLFFP 1059


>gi|270294536|ref|ZP_06200738.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270276003|gb|EFA21863.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1265

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1147 (31%), Positives = 566/1147 (49%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   -------------------KA--CAAGI---------------QPIIGCQLDIDMQDNLK 84
                               +     A I               +PI+GC++ +       
Sbjct: 63   KGEIKDLKKRIAGIESGEIECEDKEAEIADCRAKMAEAESKLFKPIVGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVS  +         R   S L++   EGL
Sbjct: 120  MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +    +  + AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 178  IVCSACIGGEVPKKIINDQLEEAEEAVRWYKNLFGDDYYLELQRHKATVPRANHEAYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +   +++++LA  +++ ++ +N+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  QKANAKLLELARKYDIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K ++EM ++F D+PEAL NT+EI  +  +    HAPI+P F   E    ++        
Sbjct: 298  MKTKAEMNALFEDVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 357

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L   A  G +      
Sbjct: 358  KDLFDEFTQDENGKVVLDEDAANAKIKRLGGYDKLYRIKLEADYLAKLAFDGAKKLYGDP 417

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                   + + ++RL FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS 
Sbjct: 418  L------SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSA 471

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V  KYG E+VA 
Sbjct: 472  VAYCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAH 531

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL 503
            IIT+G++  K A++DV R  ++P S+ DRLCKL+P+           AIA     + A  
Sbjct: 532  IITYGTMATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEA 591

Query: 504  -ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558
              DP V   ++ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+
Sbjct: 592  SPDPLVRDTMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL+++++++  +   RG+++D+  I   D  TY L     T
Sbjct: 652  EGSVIEDTGLIKMDFLGLKTLSIIKEAVANVRLHRGLELDIDKISISDPATYKLYCDGRT 711

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+
Sbjct: 712  IGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPI 771

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FISG  
Sbjct: 772  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFISGGQ 831

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + 
Sbjct: 832  KNGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLA 891

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA 856
            N+  I K   + +   I  + P VN   + F V  +  I + L A+KGVG    + IME 
Sbjct: 892  NITDITKLMDECKAMGINTLGPDVNESNLKFTVNKEGNIRFGLGAVKGVGEGAVQSIMEE 951

Query: 857  S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907
               + PF  + DF  RV+    N++ LE L  AG  D F    R Q           L+ 
Sbjct: 952  REKNGPFKGIFDFVQRVNLTACNKKNLECLALAGGFDSFPELKREQYFAVNSKNEVFLET 1011

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E         +      +   R   E+ ++G Y S HP
Sbjct: 1012 LVRYGNRYQADQAAAANSLFGGENVVDIATPEIPVAERWSDLDRLNRERDLVGIYLSAHP 1071

Query: 968  LDVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y  +L  +      E      + G  I +  +V + ++  ++ G+  G     + + 
Sbjct: 1072 LDEYSVVLEHVCNTHMAELEDKTALVGREITMGGIVTAVRRGISKNGNPYGIAKIEDYSG 1131

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1132 SAELPFF 1138


>gi|315639407|ref|ZP_07894567.1| DNA-directed DNA polymerase III alpha subunit [Campylobacter
            upsaliensis JV21]
 gi|315480512|gb|EFU71156.1| DNA-directed DNA polymerase III alpha subunit [Campylobacter
            upsaliensis JV21]
          Length = 1197

 Score =  711 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1060 (35%), Positives = 592/1060 (55%), Gaps = 49/1060 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YS+L+GA  L  +   +      ++A+TD  N+F A++F Q   + G++PI
Sbjct: 4    FTHLHLHTEYSMLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMRSHGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D+L               + L      GY+ L+ L S+ Y+        R
Sbjct: 64   IGLEAYLHNMDDL-----SDKSSRQRFHLCLYAKNEIGYKNLMYLSSQSYIHGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180
            I    L++  +EGLI  +    G ++                  + A++  L +K++FGD
Sbjct: 118  INKKLLEK-HSEGLICSSACLQGEVNWHLNIYNERNVRFGAKGYEAAKEAALWYKRVFGD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+   ++ ++ATN++ +  +E  EAH+V M +     
Sbjct: 177  DFYFEIMRHGINDQRAIDDDIIRLSKELDIKIIATNDTHYTFKERAEAHEVFMCIGMGKR 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF--- 295
            ++  DR R +  + Y+K   +M  +F+D+PEA+ NT ++A +C+  L++  P  P F   
Sbjct: 237  LNDPDRMRHSVKEFYVKTSEQMSELFADIPEAISNTQDLANKCNLELKLGDPTPPNFKFT 296

Query: 296  -----------IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                        +++ +   + ++    +    GLE RL            +Y+ RL+ E
Sbjct: 297  REYAKEFDITLPQEKVEFSFENDDLVFEHLCRKGLEERLK---FVDEGKHDEYKARLETE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            + +I  MKFSGY LIV DFI+ AK  NIPVGPGRGS AGS+ AYAL ITDIDPL ++LLF
Sbjct: 354  IKIIKEMKFSGYMLIVHDFIKVAKDKNIPVGPGRGSAAGSLVAYALKITDIDPLPYNLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFC+DRRDEVI YV +KYG ++VAQ+ TF  L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCRDRRDEVIDYVIDKYGSDKVAQVSTFNKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L +    VD   KL+P +    +  +A   + + +E     P    L E ++ LEGL R+
Sbjct: 474  LDISLQDVDEFIKLVPEELKITLD-EAYEKEPKIKEFIEKHPKGKELWEYAKALEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L    P++R  ++D    +TQ++   +E   LIKFDFLGLKTLTL+
Sbjct: 533  AGMHAAGLVISNESLWNKTPLFRQSKNDERHLITQYSKDHLEDVDLIKFDFLGLKTLTLI 592

Query: 583  QKSLDFLAQRGVKVD-LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R  K      I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  HNAIKLIKERYNKDIVWESIDVNDSKVYKTIQSGNTLGIFQIESDGMQSLNARLKPENFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            D+IA+++LYRPGP+++ +   + +RK+G +KI+    ++  +L+ T GVI+YQEQVMQI 
Sbjct: 653  DLIAVLALYRPGPMESGMLDDFIDRKHGLKKIIYPFDVLKEVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K+ F +GA K G ++  A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMAKLKDEFANGAEKQGYNRAKAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAY +I++QTA++KT+YP EF+AA +T E + +E +  + ++ ++ NI+++PP
Sbjct: 773  GFNKSHSAAYGLITFQTAYLKTYYPSEFMAALLTSEQNKIENVAMYIEEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKVGD-----NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873
             +N    +F           I Y L AIK VG     +++E    +  F  L DF S++D
Sbjct: 833  RINKAISEFSAIKQEDGTEAIVYGLGAIKSVGGPAIENVLELRSKNGDFKDLHDFLSKID 892

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            + K+NRR LE  + AG+ D FG++R  L  +LD + + A+ + + R N   ++F  E+  
Sbjct: 893  TAKINRRTLEGFIKAGSFDDFGFTRKCLFNNLDTLAESARKMAEVRKNSASSLFGAEELN 952

Query: 934  FSDKITL-EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               KI +    S   +  +   E+ +LG Y SGHPLD +   +  +      +      G
Sbjct: 953  ADTKINIVVDNSEFEAMEKLGYEKEILGIYISGHPLDKFFEEINGIEYTKSIDFENLKGG 1012

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              I     V + +   ++ G R G +   +    +E   F
Sbjct: 1013 GEILSIGKVENFKSLMSKSGKRYGILEILDFYSSFEVTIF 1052


>gi|210135627|ref|YP_002302066.1| DNA polymerase III subunit alpha [Helicobacter pylori P12]
 gi|210133595|gb|ACJ08586.1| DNA polymerase III alpha-subunit [Helicobacter pylori P12]
          Length = 1211

 Score =  711 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1078 (34%), Positives = 586/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     N+             A++    +
Sbjct: 115  FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +KA  GL+ RL    +      + Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAKNEGLSFEDDASYFAHKAREGLKERL---ILVPKEKHEQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+ MPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVGMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++ +  ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNDTARQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWYKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  +D + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMNDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E +  +  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVACYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V          + +I + L A+KGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F   +G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMEGGVKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|91216678|ref|ZP_01253643.1| DNA polymerase III alpha subunit [Psychroflexus torquis ATCC 700755]
 gi|91185147|gb|EAS71525.1| DNA polymerase III alpha subunit [Psychroflexus torquis ATCC 700755]
          Length = 1452

 Score =  711 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1078 (32%), Positives = 555/1078 (51%), Gaps = 69/1078 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-- 66
             SFVHL  H+ +S+L+  +++ +++   A    PA+AITD  N+  A  F          
Sbjct: 260  SSFVHLHNHTQFSVLQSTMAVPDLVAAAAKHNMPAVAITDHANMMGAFHFVNAVKKHNSA 319

Query: 67   -----------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
                       I+PIIGC+  +         +  +T       +V+L    +GY  L ++
Sbjct: 320  IANDSENTSQPIKPIIGCEFFVCED------HTDRTHKDNGYQMVILAKNKKGYHNLAKM 373

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S  +         RI    L E   + LI+L+G   G I           AE+ L+ +K
Sbjct: 374  SSMGFTKG-FYYIPRIDKK-LIETYKDDLIVLSGSLYGEIASKLLNLGENQAEESLVWWK 431

Query: 176  KLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            + FGD  YV + RH+  D  R    +++LA  H++ LVATNN+ +  ++D  AHD+L+ V
Sbjct: 432  ETFGDDFYVEIMRHQQEDEERANEALIRLANKHDINLVATNNTYYADQKDANAHDILLCV 491

Query: 235  AHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
                  +                 +Y K+  EM S+F DLP+A+ NT  IA +       
Sbjct: 492  KEGEKQATPIGRGRGYRYGLPNDQYYFKSAEEMKSLFKDLPQAISNTEAIANKVEAFELA 551

Query: 288  HAPILPRFIEKEC--------DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
               +LP F+  E         D  ++ E   L++    G +          G  +++ + 
Sbjct: 552  REVLLPAFVIPEQFLDEADKTDAGKRGENAYLKHLTFEGAKR-------RYGELSEEIKD 604

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RLDFEL+VIA   + GYFLIV DFI+ A+K  + VGPGRGS AGS  AY L IT+IDP++
Sbjct: 605  RLDFELSVIANTGYPGYFLIVEDFIREARKMGVSVGPGRGSAAGSAVAYCLKITNIDPIK 664

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            + LLFERFLNP+R+SMPD DIDF  + R +V+ YV  KYG  +VAQIIT+G++ AK+A+R
Sbjct: 665  YDLLFERFLNPERVSMPDIDIDFDDEGRSKVMDYVIEKYGQNQVAQIITYGTMAAKSAIR 724

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL------- 512
            D  R L +P  + DR+ KLIP+             + R +        V  L+       
Sbjct: 725  DTARVLDLPLYEADRIAKLIPDMSKLGKIFSMNEKEIRKKFRSEEVDKVLELIAISEQDS 784

Query: 513  ------EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
                    ++ LEG  R+   HA G++I    +++ VP+     S+L VTQF+   +E A
Sbjct: 785  PEAETVNQARILEGSVRNTGIHACGVIITPDDITKFVPVSVAKDSNLYVTQFDNSVVEDA 844

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GL+K DFLGLKTLTL++ +++ +  R     D    P DD +TY L     T+GIFQ ES
Sbjct: 845  GLLKMDFLGLKTLTLIKDTVEIVKARHEVDLDPEAFPLDDEKTYELFQRGETVGIFQYES 904

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
             GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RK+G+E I    P +   L+ET
Sbjct: 905  LGMQKHMKDLKPTVFGDLIAMNALYRPGPMEYIPSFIKRKHGEEDISYDLPEMQEYLEET 964

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK+K+ + K K +FI+ A  NG ++  
Sbjct: 965  YGITVYQEQVMLLSQKLASFTKGEADVLRKAMGKKLKDVLAKLKPKFINQAKDNGHNEEK 1024

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               I++    FA Y FNKSH+  YA ++YQTA++K HYP E++AA ++  M +++K+  F
Sbjct: 1025 LEKIWKDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYPAEYMAAVLSNNMSDIKKVSFF 1084

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
             ++ ++  + ++ P VN     F V  D+ + + + AIKGVG      I+E      + S
Sbjct: 1085 MEECKRMRLPVLGPDVNESYYKFSVNKDDAVRFGMGAIKGVGGGAVNTIVEHRKKGHYLS 1144

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGY-SRMQLLQS-------LDNIQKYAQWVE 916
            + D   R+D +  N++  ESL +AGA D  G   R Q  Q+       L+ + KYA   +
Sbjct: 1145 IFDLSKRIDLRAANKKAFESLAYAGAFDSLGEVHRAQYFQATDGDLTFLEKVIKYAARYQ 1204

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
            +N+ +   ++F         +  +      +S    + E+ V+G + SGHPLD +K  + 
Sbjct: 1205 ENKNSSQVSLFGESSEVQIPEPEVPPCEPWHSMRTLKAEKEVVGLFLSGHPLDDFKLEIN 1264

Query: 977  KMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   +E           + LA +V     K ++ G         +  + +E   F
Sbjct: 1265 SFCRSNLKEVAEIENHLNKELSLAGVVTDVNHKVSKTGKGFATFVLEDYNESHEFWIF 1322


>gi|163744574|ref|ZP_02151934.1| DNA polymerase III, alpha subunit [Oceanibulbus indolifex HEL-45]
 gi|161381392|gb|EDQ05801.1| DNA polymerase III, alpha subunit [Oceanibulbus indolifex HEL-45]
          Length = 1161

 Score =  711 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 494/1052 (46%), Positives = 667/1052 (63%), Gaps = 59/1052 (5%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +LEGAL L  +         PA+A+TD+NN+F+ALEFS     AG+QPIIGCQ+D+    
Sbjct: 1    MLEGALRLKKLPGMCRDAGMPALALTDSNNMFAALEFSVAMAGAGVQPIIGCQVDVAY-- 58

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                   G+ P P  P +VLL  +  GY+ L++L S +YL D+G     + L  L+ +  
Sbjct: 59   --VEVQPGEKPRPPAP-VVLLAQSELGYENLMKLNSCLYL-DKGGAVAEVTLDELEALSA 114

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR------GYDRY 195
            + +I LTGG  GP+           AE  +   K  FGDRLYV LQRH         +R 
Sbjct: 115  D-IICLTGGPMGPVGMLLQGGQRPAAETLMARLKAAFGDRLYVELQRHPVDGGQPEPERL 173

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV-VSQKDRPRVTPDHYL 254
             E   V++AY  ++PLVATN+  F   + YEAHD L+ ++       Q+ R R+T  HY 
Sbjct: 174  TERGFVEMAYAMDIPLVATNDVYFPKPDMYEAHDALICISEGAYVDQQQPRRRLTAQHYF 233

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
            K+++EM ++F+DLPEAL NTVEIA+RC+F+            +        +E  ELR  
Sbjct: 234  KSQAEMATLFADLPEALSNTVEIAKRCAFMAY--------RRDPILPKFADDEVAELRRM 285

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
            A  GL+ RLA   I      +DY++RLDFEL +I  M F GYFLIVADFIQWAK NNIPV
Sbjct: 286  ANEGLKARLA--VIPHAVSVEDYQKRLDFELGIIEGMGFPGYFLIVADFIQWAKDNNIPV 343

Query: 375  GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
            GPGRGSGAGS+ AYALT+TD+DPLR+SLLFERFLNP+R+SMPDFDIDFC DRR+EVIRYV
Sbjct: 344  GPGRGSGAGSLVAYALTVTDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRYV 403

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA-IA 493
            Q KYG ++V QIITFG+L +KAA+RD+GR LQMPY QVDRL K+IP +   PVS++  +A
Sbjct: 404  QEKYGRDKVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPVSIEKALA 463

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            D+ R RE    +  V RLL   Q++EGL R+ASTHAAG+VIGDRPL QLVP+Y+D RSD+
Sbjct: 464  DEPRLREEAKNEEVVARLLNYGQQVEGLLRNASTHAAGVVIGDRPLDQLVPLYQDPRSDM 523

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ------------------RGVK 595
            P TQFNMKW+E+AGL+KFDFLGLKTLT++Q ++D +                     G  
Sbjct: 524  PATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAVDQIKAGGRHLHIAADGTEIYQPPEGHI 583

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             D++ IP DD  TY L ++  T+ +FQ+ESSGM  AL+ M+P CIEDI+ALV+LYRPGP+
Sbjct: 584  DDIATIPLDDKATYKLYSSAKTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPM 643

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            +NI  Y   KNG+ ++ S+HP ID +L+ETQG+I+YQEQVMQIAQ+++GYSL  AD+LRR
Sbjct: 644  ENIPTYCEVKNGQRELESVHPSIDYILEETQGIIVYQEQVMQIAQVMAGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKKI EEM K++ +F  GA  NG+ K  A  +F+LL KFA+YGFNKSHAAAYAV+SYQ
Sbjct: 704  AMGKKIAEEMAKERPKFEKGAMANGVDKKKAAEVFDLLEKFANYGFNKSHAAAYAVVSYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNR 834
            TAW+K ++PVEF+A  M  ++   +K+  + ++ R +  +  +PP VN     FKV D  
Sbjct: 764  TAWLKANHPVEFMAGVMNCDIHLTDKLAVYFEEVRKRLELPWVPPCVNRSDASFKVVDGA 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA----DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            + Y+L A+K VG    R + E       DKPF +L D   RVD K++ +R LE LV +GA
Sbjct: 824  LVYALGALKNVGLEAMRLVTEGRKVEGVDKPFATLYDLARRVDLKRVGKRPLEMLVRSGA 883

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R ++ QSLD +  Y+  + + + +   ++F  E G    +  +       S+ 
Sbjct: 884  FDQLDSNRRRVFQSLDGLVSYSAAIHEQKASNQVSLFG-EAGDDLPEPRMLPCDDWQSAE 942

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRK-------MGIKGYEESVATIRGN---NIRLAAM 1000
            R   E + +GFY SGHPLD Y   LR+       +     +E    +      N RLA +
Sbjct: 943  RLAEEFKAVGFYLSGHPLDDYMVPLRRKWARETGLPFLTLDELTEKVSTRGAMNARLAGV 1002

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V  +Q++K+ +G+R  +   S+    YE   F
Sbjct: 1003 VAGRQERKSARGNRFAFAQLSDTTGGYEVTLF 1034


>gi|148654277|ref|YP_001274482.1| DNA polymerase III subunit alpha [Roseiflexus sp. RS-1]
 gi|148566387|gb|ABQ88532.1| DNA polymerase III, alpha subunit [Roseiflexus sp. RS-1]
          Length = 1279

 Score =  711 bits (1836), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/1061 (32%), Positives = 548/1061 (51%), Gaps = 56/1061 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS YSLL+G  + + I  +       +IA+TD   ++  +EF   A  AGI+P
Sbjct: 3    DFVHLHVHSEYSLLDGYAATSAIAARAVELGMDSIALTDHGVMYGVMEFYASAKKAGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG +  +        T++G         ++LL     GY+ L+ L +R +L   GK   
Sbjct: 63   IIGLEAYMAPGSRRDATSRGAK---NYYHLLLLAKDEVGYRNLVRLTTRAHLDGMGKGVF 119

Query: 128  -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
               RI    L++   +GLI+ +   +G + +         A +    ++ L G D  ++ 
Sbjct: 120  ARPRIDRELLEQYH-DGLIVTSACIAGEVIQRLTEKQKDQAREIAAWYRDLLGPDNYFLE 178

Query: 186  LQRHR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV---V 240
            LQ H           ++V++     +PLV TN++ F+  ED EAH +++A+ ++     +
Sbjct: 179  LQLHENTPELEEINDELVRIGKELGIPLVVTNDTHFVRPEDLEAHKMILALGYNMTLKEL 238

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              K+       H +                LENT  IA RC+  L+     LP     E 
Sbjct: 239  CAKNYQMDATYHIMSGEEMWRRFKKYGTTPLENTRRIAERCNLTLEFGRVQLPTIDIPEG 298

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D      + LR     GL  R        G+  ++Y +RL +EL+VI +  F  Y LIV
Sbjct: 299  HD----AASYLRLVCEEGLMRRF------NGHPPEEYVKRLAYELDVINQTGFPDYMLIV 348

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D++++A+   IP  P RGS   S+  Y L ITD+DP++  LLFERFL+P+R+ MPD DI
Sbjct: 349  WDYVKFARARGIPCLP-RGSAGASLILYCLGITDVDPVKNKLLFERFLSPERLEMPDIDI 407

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR EV+ Y+  KYG E  AQIIT+G+L AKAALRD+GR L++P ++VDR+ +LIP
Sbjct: 408  DFADSRRHEVLEYIAAKYGRENTAQIITYGTLGAKAALRDIGRVLEIPLNEVDRVARLIP 467

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              P      QA+      ++    +P + RL++ +QK+EG  +   THA G+V+   PL 
Sbjct: 468  ALPVGTTIAQALERVPELKQIYTTNPDLARLIDWAQKVEGRMKSVGTHACGVVVSRTPLE 527

Query: 541  QLVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
             +VP+ R  + +   +  F    ++K GL+K D LGL  L+++ ++L+++AQ    K++L
Sbjct: 528  DIVPLQRTTKDENALMAAFEGPTLQKMGLLKMDVLGLTNLSVVAEALEYIAQTTGRKMEL 587

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD + +  L+   T  +FQLES GM + L  ++P  +ED+ A+V+LYRPGP++ I
Sbjct: 588  ADIPLDDPKVFEALSRGETTNVFQLESPGMTRYLMQLKPTRVEDLYAMVALYRPGPLEQI 647

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             VY + KN  + I  +HP++ P+L++T GVI+YQEQ+M++ Q ++ Y+L +A ++ +A+ 
Sbjct: 648  PVYIHNKNNPQDIKYLHPILKPILEDTYGVIVYQEQIMRLLQEVADYTLGQAYIVIKAIS 707

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK K+ M + + +F  G  + G+++  A  +++L+  FA Y FN+ H+  Y ++SYQTAW
Sbjct: 708  KKDKKLMAENEVKFKQGCLRKGLTQEQADQLWDLILPFAGYSFNRPHSTLYGLLSYQTAW 767

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GD 832
            +K +YPVE++AA +       E I K   + RQ  + ++ P +N   +DF +       D
Sbjct: 768  LKVNYPVEYMAAVLKGAGGVTEDIAKAVNECRQRGVPVLGPDINASALDFTIREFRDPSD 827

Query: 833  NRIY----YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             +I     + LAAIK VG      I+    A+ PF SL+D C RVD   LN+RVLESL+ 
Sbjct: 828  GQIRRGILFGLAAIKNVGAGPIEAILRERDANGPFRSLDDLCERVDRHALNKRVLESLIK 887

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS--- 944
            AGALD    +R Q L  LD   +     +KNR     ++F +        I+        
Sbjct: 888  AGALDPLPGTRRQKLAILDTALEAGARAQKNRETGQIDMFGNIVADTDASISAIPLPTIN 947

Query: 945  --VENSSVRFENEQRVLGFYFSGHPLDVYKPI-LRKMGIKGYEESVATIR--------GN 993
               ++   +   E+ +LG  FS  P    + + L    I       A           G 
Sbjct: 948  ETPDDRKEQLAWEKELLGVVFSSDP----RKVALADAAIDNRVPLAALRDPEGLQEYMGK 1003

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA-KEYEANFFP 1033
                A M+   +   T+KG  +      +      E   FP
Sbjct: 1004 VHTFAGMLTRVRAISTKKGDSMLVAALEDEHEDVVELVAFP 1044


>gi|262202886|ref|YP_003274094.1| DNA polymerase III subunit alpha [Gordonia bronchialis DSM 43247]
 gi|262086233|gb|ACY22201.1| DNA polymerase III, alpha subunit [Gordonia bronchialis DSM 43247]
          Length = 1180

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/1069 (30%), Positives = 533/1069 (49%), Gaps = 50/1069 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S  FVHL  H+ YS+L+GA  +  +  +       AI +TD  N+F A EF   A  
Sbjct: 1    MTDS--FVHLHNHTEYSMLDGAAKVAPLFAEAKRLGMTAIGMTDHGNMFGASEFYNTAVK 58

Query: 65   AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
              I+PIIG +  +                   +   +       + ++   A G + L +
Sbjct: 59   NDIKPIIGIEAYVAPASRFETKRVTWGTRDQKDDDVSGSGAYTHMTMVAENATGLRNLFK 118

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S   +  Q  +  R+    + E   EG+I  TG  SG +         + A +    +
Sbjct: 119  LSSLASIEGQLGKWARMDADIIAEY-AEGIIATTGCPSGEVQTRLRLGHEREALEAAAKW 177

Query: 175  KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +++FG +  Y+ L  H    +R     ++++     +  + TN+  +++++  ++H+ L+
Sbjct: 178  QEIFGKENFYLELMEHGLEIERRVRDGLLEVGRKLGIKPLVTNDCHYVTKDHAKSHEALL 237

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAP 290
             V     +S   R +   D Y    +  +    D  +P A +NT+EI  R      V   
Sbjct: 238  CVQTGKTLSDPTRFKFDGDGYYLKSAAEMRELWDSVVPGACDNTLEIGERVQSYADVFTH 297

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +    +   + ++  LR +   GL  R   G        ++Y++R ++EL+VI +
Sbjct: 298  RDRMPVFPVPEG--ESQQTWLRKEVAKGLAERRFAG----AEVPREYQERANYELDVIIQ 351

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F  YFL+V D I+ A++  I VGPGRGS AGS+ A+AL IT+IDP+   LLFERFLNP
Sbjct: 352  MGFPAYFLVVGDLIRHAQEVGIRVGPGRGSAAGSLVAWALGITNIDPIPHGLLFERFLNP 411

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468
            +R+SMPD DIDF   RR E++RY  +++G ++VAQ+ITFG+++ KAA++D  R    Q  
Sbjct: 412  ERVSMPDIDIDFDDRRRGEMVRYATDRWGSDKVAQVITFGTIKTKAAIKDSARVQFGQPG 471

Query: 469  YSQVDR---------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            +S  DR         + K IP         +   + +  R     DP V ++ + +  LE
Sbjct: 472  FSIADRITKALPPPIMAKDIPVWGITDPDHERFNEAAEVRSLIETDPDVKKIYDTALGLE 531

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R+A  HA  +++   PL+  +P++R  +    +T ++    E  GL+K DFLGL+ L
Sbjct: 532  GLIRNAGVHACAVIMSSEPLTDAIPVWRRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNL 591

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  +++ +   RG  +DL   P DD +TY LL    TLG+FQL+   MR+ L+ MQP 
Sbjct: 592  TVIGDAIENIKINRGFDLDLDDAPLDDPKTYELLARGDTLGVFQLDGGAMRELLKRMQPT 651

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQ 692
              EDI+A+++LYRPGP+       Y +RKNG++++  IHP +   LK    +T G+I+YQ
Sbjct: 652  GFEDIVAVLALYRPGPMGMNAHNDYADRKNGRQEVKPIHPELAEPLKEILADTYGLIVYQ 711

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQ+MQIAQ ++GYSL  AD+LRRAMGKK  E +  + E F +G   NG S      +++ 
Sbjct: 712  EQIMQIAQKVAGYSLGRADILRRAMGKKKAEVLAAEFEGFEAGMKANGFSGPAIKALWDT 771

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  FA Y FNKSHAA Y ++S+ TA++K +YP E++A  +T   D+ +K   +  D R+ 
Sbjct: 772  ILPFAGYAFNKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAIYLADCRKL 831

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
             I ++PP VN    +F      I + LAAI+ VG+     I+ A  +   F S  D+  +
Sbjct: 832  GITVLPPDVNESQRNFAAVGTDIRFGLAAIRNVGSGVVSSILAAREEKGKFTSFSDYLGK 891

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            +D    N++V ESL+ AGA D   + R  L        +     +K       ++F    
Sbjct: 892  IDVTACNKKVTESLIKAGAFDSLAHPRKGLFLVHGEAVESVLGTKKAEAIGQFDLFGDAG 951

Query: 932  GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            G          + +      ++  +   E+ +LG Y SGHPL   +  +           
Sbjct: 952  GADDTMAEVFAVKVPD-EEWDTKHKLAIEREMLGLYVSGHPLSGVEHAIAAHTDTSITTL 1010

Query: 987  V--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +      G  I +  ++ S  ++  +KG     VT  +     E  FFP
Sbjct: 1011 LEGNIADGAQITIGGIISSVTRRVNKKGEPWAAVTLEDMVGGVEVYFFP 1059


>gi|15677663|ref|NP_274824.1| DNA polymerase III, alpha subunit [Neisseria meningitidis MC58]
 gi|14194679|sp|Q9JXZ2|DPO3A_NEIMB RecName: Full=DNA polymerase III subunit alpha
 gi|7227081|gb|AAF42162.1| DNA polymerase III, alpha subunit [Neisseria meningitidis MC58]
 gi|316984432|gb|EFV63405.1| DNA polymerase III subunit alpha [Neisseria meningitidis H44/76]
 gi|325139647|gb|EGC62186.1| DNA polymerase III, alpha subunit [Neisseria meningitidis CU385]
 gi|325200888|gb|ADY96343.1| DNA polymerase III, alpha subunit [Neisseria meningitidis H44/76]
          Length = 1144

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1038 (38%), Positives = 585/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+PI    + I   D                  +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPIGAADVRIGNPD----------APDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARTAALKYAAWFPDAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  MELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A    +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSLDDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L K
Sbjct: 406  FDVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465

Query: 478  LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S  +A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLSLEKAMETEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  IDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    D +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++     +        +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLDRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQVEIMV 1014


>gi|295839452|ref|ZP_06826385.1| DNA polymerase III, alpha subunit [Streptomyces sp. SPB74]
 gi|197698735|gb|EDY45668.1| DNA polymerase III, alpha subunit [Streptomyces sp. SPB74]
          Length = 1181

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/1069 (31%), Positives = 536/1069 (50%), Gaps = 49/1069 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F HL VH+ YSLL+GA  L ++           IA++D  NL  A +F  +A  
Sbjct: 1    MSAKTPFTHLHVHTQYSLLDGAARLKDMFQACNEMGMTHIAMSDHGNLHGAYDFFHQAKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +  + + G   L +
Sbjct: 61   AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFK 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EGLI  TG  SG +         + A K    +
Sbjct: 121  LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQPEEALKAAADY 179

Query: 175  KKLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG DR ++ L  H     +R    ++++     +P + TN+S +    +  AHD L+
Sbjct: 180  QDIFGKDRYFLELMDHGIDIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHESVAHDALL 239

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             +     +S  DR R     Y    +       D  +A +         +  +       
Sbjct: 240  CIQTGKNLSDPDRFRFDGTGYYLK-TTDEMYAIDSSDAWQEGCRNTLLVAEQVDTTGMFE 298

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             R +  + D      E    + +   G+E R   G         D +++ ++E++VI +M
Sbjct: 299  KRDLMPKFDIPEGFTEITWFQEEVRRGMERRFPAGV------PDDRQRQAEYEMDVIIQM 352

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+
Sbjct: 353  GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLNPE 412

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+ 
Sbjct: 413  RISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 472

Query: 472  VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DR+ K +P D     +        +    ++    R     +P V ++++ ++ +EGL 
Sbjct: 473  GDRITKAMPADVLGKGIDLDGITNPTHPRYSEAGEVRGMYENEPDVKKVIDTAKGVEGLV 532

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++   P+    P++     ++ +TQ++    E  GL+K DFLGL+ LT++
Sbjct: 533  RQMGVHAAGVIMSSEPIIDHAPVWVRHTDNVTITQWDYPQCESLGLLKMDFLGLRNLTIM 592

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  +   +G ++DL  IP DD +TY LL    TLG+FQ +   MR  L  M+PD  E
Sbjct: 593  DDAVKMVKSNKGRELDLLAIPLDDPKTYELLCRGDTLGVFQFDGGPMRSLLRLMKPDNFE 652

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695
            DI A+ +LYRPGP+       Y  RKNG+++I  IHP ++  LKE    T G+I+YQEQV
Sbjct: 653  DISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEVLGLTYGLIVYQEQV 712

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+++GYSL EAD+LRR MGKK  +E++K    F +GA KNG S      ++++L  
Sbjct: 713  QKAAQIVAGYSLGEADILRRVMGKKKADELEKNFVLFQAGARKNGYSDEAIQALWDVLVP 772

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+  I+
Sbjct: 773  FAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAAVLTSVRDDKDKSAVYLNECRRMGIR 832

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            ++PP VN    +F   GD+ I + L A++ VG      I+ +      + S  D+  +V+
Sbjct: 833  VLPPDVNESLANFAAQGDDVILFGLTAVRNVGQNVVESIIRSRKAKGKYASFPDYLDKVE 892

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------ 927
            +   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F      
Sbjct: 893  AVVCNKRTTESLIKAGAFDQLGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGMGDD 952

Query: 928  -AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
               ++  F   +T         S     E+ +LG Y S HPL   + +L      G  + 
Sbjct: 953  DGKDEPGFGLDVTFGD-DEWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIGQL 1011

Query: 987  V--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1012 TGGDFGDGAVVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1060


>gi|60680202|ref|YP_210346.1| putative DNA polymerase III alpha subunit [Bacteroides fragilis NCTC
            9343]
 gi|60491636|emb|CAH06388.1| putative DNA polymerase III alpha subunit [Bacteroides fragilis NCTC
            9343]
          Length = 1264

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/1146 (30%), Positives = 565/1146 (49%), Gaps = 134/1146 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F+  EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFAIKEFTNYVNKKNGGP 62

Query: 61   -----------KACAAG-------------------------IQPIIGCQLDIDMQDNLK 84
                        A  AG                          +PIIGC++ +       
Sbjct: 63   KGEIKDLKKRIAAIEAGEVECADKDAEIADCKAKIADAEGRLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVSR +         R   + L++   EGL
Sbjct: 120  MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKG-YYMRPRTDRNELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+              
Sbjct: 178  IICSACLGGEVPKKITQGLLAEAEEAIQWYKNLFGDDYYLEMQRHKATVPKANHEAYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ +  + + L+ TN+  F++EE  EAHD L+ ++    +   +R   T   +
Sbjct: 238  VNVNKHLIEYSKKYNVKLICTNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMYYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    ++        
Sbjct: 298  MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 357

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L+     G +      
Sbjct: 358  KDLFDEFTQDENGNVVLSEEAAKDKIKRLGGYDKLYRIKLEADYLKKLTFDGAKKFYGDP 417

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                   + + ++RL FEL+++  M F GYFLIV DFI   +   + +GPGRGS AGS  
Sbjct: 418  L------SPEVKERLVFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAV 471

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AY L IT IDP+++ LLFERFLNPDR+S+PD DIDF  D R EV+R+V  KYG E+VA I
Sbjct: 472  AYCLQITKIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGQEKVAHI 531

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL- 503
            IT+G++  K A++DV R  ++P ++ DRL KL+P+           AI      + A   
Sbjct: 532  ITYGTMATKLAIKDVARVQKLPLAESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEAS 591

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFN 559
             DP V   ++ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+ 
Sbjct: 592  PDPLVRDTMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYE 651

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTL 618
               IE  GLIK DFLGLKTL++++++++ +   +G+++D+  I  +D  TY L +   T+
Sbjct: 652  GSVIEDTGLIKMDFLGLKTLSIIKEAVENIRLSKGMELDIDSISIEDPATYKLYSDGRTI 711

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P++
Sbjct: 712  GTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVM 771

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  K
Sbjct: 772  EKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRK 831

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N
Sbjct: 832  NGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSN 891

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS 857
            +  I K   + +   +Q + P VN   + F V  +  I + L A+KGVG    + IME  
Sbjct: 892  ITDITKLMDECKMMGVQTLGPDVNESNLKFTVNRNGNIRFGLGAVKGVGEAAVQSIMEER 951

Query: 858  A-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNI 908
              + PF  + DF  RV+    N++ +E L  AG  D F    R Q           L+ +
Sbjct: 952  KENGPFKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGETFLETL 1011

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +Y    + ++     ++F  +         +      N   R   E+ ++G Y S HPL
Sbjct: 1012 MRYGNRYQADKAAAVNSLFGGDNVIDIATPEILPAERWNDLERLNKERELVGIYLSAHPL 1071

Query: 969  DVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            D Y  +L  +      E    + + G  I +  +V S ++  ++ G+  G     + +  
Sbjct: 1072 DEYAIVLEHVCNTHMSELDDKSALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGS 1131

Query: 1027 YEANFF 1032
             E  FF
Sbjct: 1132 AEIPFF 1137


>gi|253563964|ref|ZP_04841421.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_2_5]
 gi|265765339|ref|ZP_06093614.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_16]
 gi|251947740|gb|EES88022.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_2_5]
 gi|263254723|gb|EEZ26157.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_1_16]
          Length = 1273

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/1146 (30%), Positives = 565/1146 (49%), Gaps = 134/1146 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F+  EF+          
Sbjct: 12   DFVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFAIKEFTNYVNKKNGGP 71

Query: 61   -----------KACAAG-------------------------IQPIIGCQLDIDMQDNLK 84
                        A  AG                          +PIIGC++ +       
Sbjct: 72   KGEIKDLKKRIAAIEAGEVECADKDAEIADCKAKIADAEGRLFKPIIGCEMYVA---RRT 128

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVSR +         R   + L++   EGL
Sbjct: 129  MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKG-YYMRPRTDRNELEKYH-EGL 186

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+              
Sbjct: 187  IICSACLGGEVPKKITQGLLAEAEEAIQWYKNLFGDDYYLEMQRHKATVPKANHEAYPLQ 246

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ +  + + L+ TN+  F++EE  EAHD L+ ++    +   +R   T   +
Sbjct: 247  VNVNKHLIEYSKKYNVKLICTNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMYYTKQEW 306

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    ++        
Sbjct: 307  MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 366

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L+     G +      
Sbjct: 367  KDLFDEFTQDENGNVVLSEEAAKDKIKRLGGYDKLYRIKLEADYLKKLTFDGAKKFYGDP 426

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                   + + ++RL FEL+++  M F GYFLIV DFI   +   + +GPGRGS AGS  
Sbjct: 427  L------SPEVKERLVFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAV 480

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AY L IT IDP+++ LLFERFLNPDR+S+PD DIDF  D R EV+R+V  KYG E+VA I
Sbjct: 481  AYCLQITKIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGQEKVAHI 540

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL- 503
            IT+G++  K A++DV R  ++P ++ DRL KL+P+           AI      + A   
Sbjct: 541  ITYGTMATKLAIKDVARVQKLPLAESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEAS 600

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFN 559
             DP V   ++ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+ 
Sbjct: 601  PDPLVRDTMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYE 660

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTL 618
               IE  GLIK DFLGLKTL++++++++ +   +G+++D+  I  +D  TY L +   T+
Sbjct: 661  GSVIEDTGLIKMDFLGLKTLSIIKEAVENIRLSKGMELDIDSISIEDPATYKLYSDGRTI 720

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P++
Sbjct: 721  GTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVM 780

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  K
Sbjct: 781  EKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRK 840

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N
Sbjct: 841  NGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSN 900

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS 857
            +  I K   + +   +Q + P VN   + F V  +  I + L A+KGVG    + IME  
Sbjct: 901  ITDITKLMDECKMMGVQTLGPDVNESNLKFTVNRNGNIRFGLGAVKGVGEAAVQSIMEER 960

Query: 858  A-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNI 908
              + PF  + DF  RV+    N++ +E L  AG  D F    R Q           L+ +
Sbjct: 961  KENGPFKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGETFLETL 1020

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +Y    + ++     ++F  +         +      N   R   E+ ++G Y S HPL
Sbjct: 1021 MRYGNRYQADKAAAVNSLFGGDNVIDIATPEILPAERWNDLERLNKERELVGIYLSAHPL 1080

Query: 969  DVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            D Y  +L  +      E    + + G  I +  +V S ++  ++ G+  G     + +  
Sbjct: 1081 DEYAIVLEHVCNTHMSELDDKSALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGS 1140

Query: 1027 YEANFF 1032
             E  FF
Sbjct: 1141 AEIPFF 1146


>gi|318057575|ref|ZP_07976298.1| DNA polymerase III subunit alpha [Streptomyces sp. SA3_actG]
 gi|318078654|ref|ZP_07985986.1| DNA polymerase III subunit alpha [Streptomyces sp. SA3_actF]
          Length = 1181

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/1069 (31%), Positives = 536/1069 (50%), Gaps = 49/1069 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F HL VH+ YSLL+GA  L ++           IA++D  NL  A +F  +A  
Sbjct: 1    MSAKTPFTHLHVHTQYSLLDGAARLKDMFQACNEMGMTHIAMSDHGNLHGAYDFFHQAKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +  + + G   L +
Sbjct: 61   AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFK 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EGLI  TG  SG +         + A K    +
Sbjct: 121  LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQPEEALKAAADY 179

Query: 175  KKLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG DR ++ L  H     +R    ++++     +P + TN+S +    +  AHD L+
Sbjct: 180  QDIFGKDRYFLELMDHGIDIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHESVAHDALL 239

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             +     +S  DR R     Y    +       D  +A +         +  +       
Sbjct: 240  CIQTGKNLSDPDRFRFDGTGYYLK-TTDEMYAIDSSDAWQEGCRNTLLVAEQIDTTGMFE 298

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             R +  + +      E    + +   G+E R   G         D +++ ++E++VI +M
Sbjct: 299  KRDLMPKFEIPDGFTEITWFQEEVRRGMERRYPAGV------PDDRQKQAEYEMDVIIQM 352

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+
Sbjct: 353  GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLNPE 412

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+ 
Sbjct: 413  RISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 472

Query: 472  VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DR+ K +P D     +        +    ++    R     +P V ++++ ++ +EGL 
Sbjct: 473  GDRITKAMPADVLGKGIDLDGITNPTHPRYSEAGEVRGMYENEPDVKKVIDTAKGVEGLV 532

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++   P+    P++     ++ +TQ++    E  GL+K DFLGL+ LT++
Sbjct: 533  RQMGVHAAGVIMSSEPIIDHAPVWVRHTDNVTITQWDYPQCESLGLLKMDFLGLRNLTIM 592

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  +   +G ++DL  IP DD +TY LL    TLG+FQ +   MR  L  M+PD  E
Sbjct: 593  DDAVKMVKSNKGRELDLLAIPLDDPKTYDLLCRGDTLGVFQFDGGPMRSLLRLMKPDNFE 652

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695
            DI A+ +LYRPGP+       Y  RKNG+++I  IHP ++  LKE    T G+I+YQEQV
Sbjct: 653  DISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEVLGLTYGLIVYQEQV 712

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+++GYSL EAD+LRR MGKK  +E++K    F +GA KNG S      ++++L  
Sbjct: 713  QKAAQIVAGYSLGEADILRRVMGKKKADELEKNFVLFQAGARKNGYSDEAIQALWDVLVP 772

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+  I+
Sbjct: 773  FAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAAVLTSVRDDKDKSAVYLNECRRMGIR 832

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            ++PP VN    +F   GD+ I + L A++ VG      I+ +      + S  D+  +V+
Sbjct: 833  VLPPDVNESLANFAAQGDDVILFGLTAVRNVGQNVVDSIIRSRKAKGKYASFPDYLDKVE 892

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------ 927
            +   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F      
Sbjct: 893  AVVCNKRTTESLIKAGAFDQLGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGMGDD 952

Query: 928  -AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
               ++  F   +T         S     E+ +LG Y S HPL   + +L      G  + 
Sbjct: 953  DGKDEPGFGLDVTFGD-DEWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIGQL 1011

Query: 987  V--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1012 TGGDFGDGAVVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1060


>gi|120403761|ref|YP_953590.1| DNA polymerase III subunit alpha [Mycobacterium vanbaalenii PYR-1]
 gi|119956579|gb|ABM13584.1| DNA polymerase III, alpha subunit [Mycobacterium vanbaalenii PYR-1]
          Length = 1182

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1063 (30%), Positives = 516/1063 (48%), Gaps = 45/1063 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  +  +L +    + PAI +TD  N+F A EF   A  AGI+P
Sbjct: 4    SFVHLHNHTEYSMLDGAAKVKPMLAEAQRLEMPAIGMTDHGNMFGASEFYNAATDAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIG +  I      +                +   +   + ++   A G + L +L S  
Sbjct: 64   IIGIEAYIAPASRFETKRVLWGDPSQKSDDVSGGGSYTHMTMVAENATGLRNLFKLSSLA 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
                Q  +  R+    + E   EG+I  TG  SG +         + A +    ++++FG
Sbjct: 124  SFEGQLGKWARMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHDREALEAAARWREIFG 182

Query: 180  -DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +  ++ L  H    +R     ++ +     +P +ATN+  +++ +  + H+ L+ +   
Sbjct: 183  PENFFLELMDHGLDIERRVREGLLDIGQKLGIPPLATNDCHYVTRDAAQNHEALLCIQTG 242

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
              +S  +R +   D Y    +  +    D          +                  + 
Sbjct: 243  KTLSDPNRFKFDGDGYFLKSAAEMRALWDGQVPGACDSTLLIAERVQSYADVWTPKDRMP 302

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    ++ + L ++ + GL+ R   GA       Q+Y  R  +E+ VI    F  YF
Sbjct: 303  IFPVPEGHDQGSWLTHEVMTGLQERRFHGAP----VPQEYIDRAQYEIKVICDKGFPAYF 358

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVAD I +A+   I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R S PD
Sbjct: 359  LIVADLINYARSVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERPSAPD 418

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQVDRL 475
             DIDF   RR E++RY  NK+G +RVAQ+ITFG+++ KAAL+D  R    Q  ++  DR+
Sbjct: 419  IDIDFDDRRRGEMLRYAANKWGSDRVAQVITFGTIKTKAALKDSARVHYGQPGFAIADRI 478

Query: 476  CKL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
             K   P   A  +        + +   + +  R     DP V  + E ++ LEGL R+A 
Sbjct: 479  TKALPPPIMAKDIPVSGITDPTHERYKEAAEVRALIDTDPDVRTIYETARGLEGLVRNAG 538

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HA  +++   PL   +P+++  +    +T ++    E  GL+K DFLGL+ LT++   +
Sbjct: 539  VHACAVIMSSEPLIDAIPLWKRPQDGAVITGWDYPSCEAIGLLKMDFLGLRNLTIIGDCI 598

Query: 587  DFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            + +   RG+ VDL  +  DD + Y LL    TLG+FQL+   MR  L  MQP    DI+A
Sbjct: 599  ENIKANRGIDVDLESLTLDDPKAYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEFNDIVA 658

Query: 646  LVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIA 699
            +++LYRPGP+       Y +RKNG++ I  IHP ++  LK+    T G+I+YQEQ+M IA
Sbjct: 659  VLALYRPGPMGMNAHNDYADRKNGRQAIKPIHPELEEPLKDILSETYGLIVYQEQIMFIA 718

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q ++ YS+ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++ +  FA Y
Sbjct: 719  QKVASYSMGKADALRKAMGKKKLEVLEAEYQGFKEGMTANGFSEKAVKALWDTILPFAGY 778

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  I ++PP
Sbjct: 779  AFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRRLGITVLPP 838

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLN 878
             VN    +F    + I + L A++ VG      ++    +   F    D+ +++D    N
Sbjct: 839  DVNESVQNFASVGDDIRFGLGAVRNVGANVVSSLVATRKEKGKFADFSDYLNKIDIAACN 898

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK- 937
            ++V ESLV AGA D  G+ R  L     +        +K       ++F    G+ +D  
Sbjct: 899  KKVTESLVKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGADGSGADAG 958

Query: 938  -----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATI 990
                 I +          +   E+ +LG Y SGHPL+    +L           +     
Sbjct: 959  DSAFTIKVPD-EEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTQIPAILDGDVA 1017

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                +R+  ++ S  ++  + G         +     E  FFP
Sbjct: 1018 NDTQVRVGGILASVNRRVNKNGLPWASAQIEDLTGGIEVLFFP 1060


>gi|302518507|ref|ZP_07270849.1| DNA polymerase III subunit alpha [Streptomyces sp. SPB78]
 gi|302427402|gb|EFK99217.1| DNA polymerase III subunit alpha [Streptomyces sp. SPB78]
          Length = 1181

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/1069 (31%), Positives = 535/1069 (50%), Gaps = 49/1069 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F HL VH+ YSLL+GA  L ++           IA++D  NL  A +F  +A  
Sbjct: 1    MSAKTPFTHLHVHTQYSLLDGAARLKDMFQACNEMGMTHIAMSDHGNLHGAYDFFHQAKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +  + + G   L +
Sbjct: 61   AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFK 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EGLI  TG  SG +         + A K    +
Sbjct: 121  LSSDAYAEGWLQKWPRMDKETISQW-SEGLIASTGCPSGEVQTRLRLGQPEEALKAAADY 179

Query: 175  KKLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG DR ++ L  H     +R    ++++     +P + TN+S +    +  AHD L+
Sbjct: 180  QDIFGKDRYFLELMDHGIDIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHESVAHDALL 239

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             +     +S  DR R     Y    +       D  +A +         +  +       
Sbjct: 240  CIQTGKNLSDPDRFRFDGTGYYLK-TTDEMYAIDSSDAWQEGCRNTLLVAEQIDTTGMFE 298

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             R +  + +      E    + +   G+E R   G         D +++ ++E++VI +M
Sbjct: 299  KRDLMPKFEIPDGFTEITWFQEEVRRGMERRYPAGV------PDDRQKQAEYEMDVIIQM 352

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+
Sbjct: 353  GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLNPE 412

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+ 
Sbjct: 413  RISMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 472

Query: 472  VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DR+ K +P D     +        +    ++    R     +P V ++++ ++ +EGL 
Sbjct: 473  GDRITKAMPADVLGKGIDLDGITNPTHPRYSEAGEVRGMYENEPDVKKVIDTAKGVEGLV 532

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++   P+    P++     ++ +TQ++    E  GL+K DFLGL+ LT++
Sbjct: 533  RQMGVHAAGVIMSSEPIIDHAPVWVRHTDNVTITQWDYPQCESLGLLKMDFLGLRNLTIM 592

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  +   +G ++DL  I  DD +TY LL    TLG+FQ +   MR  L  M+PD  E
Sbjct: 593  DDAVKMVKSNKGRELDLLAIQLDDPKTYDLLCRGDTLGVFQFDGGPMRSLLRLMKPDNFE 652

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695
            DI A+ +LYRPGP+       Y  RKNG+++I  IHP ++  LKE    T G+I+YQEQV
Sbjct: 653  DISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEVLGLTYGLIVYQEQV 712

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+++GYSL EAD+LRR MGKK  +E++K    F +GA KNG S      ++++L  
Sbjct: 713  QKAAQIVAGYSLGEADILRRVMGKKKADELEKNFVLFQAGARKNGYSDEAIQALWDVLVP 772

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+  I+
Sbjct: 773  FAGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAAVLTSVRDDKDKSAVYLNECRRMGIR 832

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            ++PP VN    +F   GD+ I + L A++ VG      I+ +      + S  D+  +V+
Sbjct: 833  VLPPDVNESLANFAAQGDDVILFGLTAVRNVGQNVVDSIIRSRKAKGKYASFPDYLDKVE 892

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------ 927
            +   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F      
Sbjct: 893  AVVCNKRTTESLIKAGAFDQLGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGMGDD 952

Query: 928  -AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
               ++  F   +T         S     E+ +LG Y S HPL   + +L      G  + 
Sbjct: 953  DGKDEPGFGLDVTFGD-DEWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIGQL 1011

Query: 987  V--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1012 TGGDFGDGAVVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1060


>gi|109946747|ref|YP_663975.1| DNA polymerase III subunit alpha [Helicobacter acinonychis str.
            Sheeba]
 gi|109713968|emb|CAJ98976.1| DNA polymerase III, alpha chain [Helicobacter acinonychis str.
            Sheeba]
          Length = 1209

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1076 (34%), Positives = 589/1076 (54%), Gaps = 58/1076 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKETKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSMTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMYLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN----------SSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     N              A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNSERNRRYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ + R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDQGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +KA  GL+ RL    +      + YR+RL+
Sbjct: 294  NPPTPPSFKFTKTYAQNEGLDFEDDASYFAHKAREGLKERL---ILVPKEKHEQYRERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKERGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++ +  ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNDTARQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHQIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A+N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMAGNKAKFVEGAKNLGHDGQKAINL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKV-------GDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
            R   I++MPP +N+   DF V        + +I + L AIKGVG+   ++I+E      +
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNEKVEKKIVFGLGAIKGVGSEPIKNIIEERTKGDY 890

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             +LEDF SR+D  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K     
Sbjct: 891  KNLEDFISRMDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDVGRAKDKANEMM 950

Query: 923  H--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
                ++F   +    +++ L+       ++ +  E E   LG + SG+PLD +K  ++  
Sbjct: 951  QGGNSLFGAMESETREQVILDMADLGEHDAKMLLEYEYETLGIHVSGNPLDEFKEEIKGF 1010

Query: 979  -GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
              +    +      G+   L   ++  ++K  ++ G   G     +   ++E  FF
Sbjct: 1011 KNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTAEILDRYGKFELMFF 1066


>gi|188528231|ref|YP_001910918.1| DNA polymerase III subunit alpha [Helicobacter pylori Shi470]
 gi|188144471|gb|ACD48888.1| DNA polymerase III subunit alpha [Helicobacter pylori Shi470]
          Length = 1211

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1078 (34%), Positives = 584/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     N+             A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +    KA  GL+ RL    +        Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLNFEDDASYFAYKAREGLKERL---VLVPKEKHDQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGEPEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|74316876|ref|YP_314616.1| DNA polymerase III subunit alpha [Thiobacillus denitrificans ATCC
            25259]
 gi|74056371|gb|AAZ96811.1| DNA polymerase III, alpha subunit [Thiobacillus denitrificans ATCC
            25259]
          Length = 1141

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1039 (38%), Positives = 588/1039 (56%), Gaps = 35/1039 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL++H+ YS+++G + ++  + +      PA+ ++D +N F  ++F + A  
Sbjct: 1    MTD-PRFIHLRLHTEYSIVDGLVRVDEAVKRAREIAMPALGVSDLSNTFGWVKFYRAARG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PI GC + +    +                ++LLV   EGY+RL EL++R Y  + 
Sbjct: 60   AGVKPIFGCDVWVSNATDRNRP----------SRLLLLVQHREGYRRLCELLTRAYQENL 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I  SWL E    GL+ L+GG  G + +A   +   VA      +  LF  R Y+
Sbjct: 110  HRGRAEIDPSWLAE-NNGGLLALSGGDGGNVAQAIIDDKPAVARAAAEAWAALFPGRYYL 168

Query: 185  NLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR       R    ++ +     LP VAT+   FL+ +D++AH+  + +A   ++   
Sbjct: 169  ELQRFGQAHTERLIDGLLDIGAELGLPAVATHPIQFLAADDFKAHEARVCIAEGMMLGDP 228

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  T + Y K   EM ++F+DLPEAL N+VEIA+RC+  L++    LP F   +   
Sbjct: 229  RRPRPFTAEQYFKTPDEMAALFADLPEALANSVEIAKRCNLTLELGKSKLPDFPTPDGMG 288

Query: 303  IQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            +    ++ +R +A  GL  R+A        +     +Y +RL+FEL  I +M F GYFLI
Sbjct: 289  L----DDYMRQRAYEGLAERMAHLYPDEAERAAKRPEYTERLEFELGTIIQMGFPGYFLI 344

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFI WAK N +PVGPGRGSGAGS+ AY L ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 345  VADFINWAKNNGVPVGPGRGSGAGSLVAYCLRITDLDPLAYDLLFERFLNPERVSMPDFD 404

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQD RD VI+YV++KYGH  V+QI TFG++ AKA LRDVGR L +PY  VD+  KL+
Sbjct: 405  IDFCQDGRDRVIQYVKDKYGHAAVSQIATFGTMAAKAVLRDVGRVLDLPYLFVDKFVKLV 464

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            PN+    ++      + +  E    +  +  LL +++KLEG+ R+   HA G++I    L
Sbjct: 465  PNELGISLAEAR-EKEPQIDERARNEEELAELLPLAEKLEGITRNVGMHAGGVLIAPGKL 523

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--GVKVD 597
            +   P+Y+   SD  V+QF+   +E  GL+KFDFLGL+TLT+L +++ F+ +        
Sbjct: 524  TDFCPLYQAEGSDAAVSQFDKDDVEAIGLVKFDFLGLRTLTILAEAVRFVQRHEDRKDFR 583

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  +P DD   Y L     T  +FQ ES   +   + ++ DC EDIIAL++L RPGP+ +
Sbjct: 584  LEDLPLDDPAVYRLFADGNTTAVFQSESRSAKDLEKRLKGDCFEDIIALMALNRPGPLGS 643

Query: 658  IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +   +  RK GK+K    HP ++P+LK T G+I+YQEQVM +AQ+L+GYSL  AD+LRR
Sbjct: 644  GMVDDFIARKQGKQKPEYFHPDLEPVLKSTYGIIVYQEQVMLVAQILAGYSLGGADMLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM KQ+  F+ GA K G+   IA  +F+L+ KFA+YGFNKSH+AAYA+++Y 
Sbjct: 704  AMGKKKPEEMAKQRAIFLEGADKRGVDVKIAERLFDLMEKFAEYGFNKSHSAAYALVAYH 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNR 834
            TAW+K +YP EF+AA+M+ EM + +K++ F +D R   + ++PP +N     F  V    
Sbjct: 764  TAWLKAYYPAEFMAATMSSEMSDTDKVRIFYEDCRANGLTMLPPDINLSGYRFDPVSRTE 823

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y L AIKG G      I+    A+ P+  L D   RVD + LNRRVLE+LV AGA D 
Sbjct: 824  IRYGLGAIKGSGEAAIGAIVAERGANGPYKGLFDLARRVDKRYLNRRVLEALVKAGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                R  L+ S+    + A      R+     +F        +   L          +  
Sbjct: 884  LSDHRASLMASIGVALETADRA--ARSGGQVGLFGEVLEGGGED--LVDVPYWPEQEKLL 939

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+  LG++FSGHP   Y   +     +  +          + LA + VS + + TR+G 
Sbjct: 940  QEKSALGYFFSGHPFTAYLAEVSGFAKRRLDSLEPARE--PVMLAGVAVSLRTQMTRRGK 997

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             +  +   +   + E   F
Sbjct: 998  -MLILLLDDATAQVEVVIF 1015


>gi|116670142|ref|YP_831075.1| DNA polymerase III subunit alpha [Arthrobacter sp. FB24]
 gi|116610251|gb|ABK02975.1| DNA polymerase III, alpha subunit [Arthrobacter sp. FB24]
          Length = 1185

 Score =  711 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1073 (34%), Positives = 548/1073 (51%), Gaps = 56/1073 (5%)

Query: 5    LEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +  S  SFVHL  H+ YS+L+GA  L  + D+      PA+A TD   LF A +F +KA 
Sbjct: 1    MTSSNDSFVHLHTHTEYSMLDGAARLGELFDETERLGMPALATTDHGYLFGAFDFWRKAT 60

Query: 64   AAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
              GI+PIIG +  +                        +   +   + LL     G + L
Sbjct: 61   DKGIKPIIGVEAYVTPGTARGDKSRVRWGEESQRKDDVSGGGSYTHMTLLSYNNVGMRNL 120

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
                S   L     +  R+    L    +EGLI  TG  SG +         + A +   
Sbjct: 121  FRASSIASLDSVFGKWPRLDRELLNTY-SEGLIATTGCPSGEVQTRLRLGQYREALEAAA 179

Query: 173  TFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             F+ +FG +  +  L  H    +R     +++LA    LPLVATN+  +  E D +AH+ 
Sbjct: 180  EFRDIFGAENYFCELMDHGLDIERRVTGDLLRLAKDLNLPLVATNDLHYTHEHDAKAHEA 239

Query: 231  LMAVAHSTVVSQKDRP-------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
            L+A+   + + +                +YLK+  EM  +F D PEA +NT+ IA RC  
Sbjct: 240  LLAIQSGSTLLEPTYDNGGSRFAFSGSGYYLKSPQEMRELFRDHPEACDNTLLIAERCEV 299

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                 A  +PRF   E +D    E + L  +   GL  R  QG           R++ D+
Sbjct: 300  SFNTGANYMPRFPCPEGED----ETSWLVKEVDKGLHYRYPQG------IPDKVRKQADY 349

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL VI  M F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPL   L+
Sbjct: 350  ELEVITSMGFPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLDPLHHGLI 409

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNPDR+SMPDFD+DF   RR EVI YV  KYG ERVA I+T+G+++ K AL+D  R
Sbjct: 410  FERFLNPDRVSMPDFDVDFDDRRRSEVIDYVTRKYGDERVAMIVTYGTIKTKQALKDSSR 469

Query: 464  ALQMPYSQVDRLCKL-IPNDPAHPVSLQAIA--------DDSRFREARLADPSVDRLLEI 514
             L  P+S  + L K   P   A  + L  I         +   FR+    DP   ++ E 
Sbjct: 470  VLGYPFSMGETLTKALPPAVMAKDIPLADIQNKEAKRYSEAGDFRQLISTDPEAAKVFET 529

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            +  +EGL R    HAAG+++   P+  ++P+ R  +    +TQF+    E  GLIK DFL
Sbjct: 530  ALGIEGLKRQWGVHAAGVIMSSDPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKMDFL 589

Query: 575  GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+ LT++  +L+ +   RG+ +DL  +  DD  +Y LL    TLG+FQL+   MR  L+
Sbjct: 590  GLRNLTIISDALENIKMNRGIDLDLETLELDDTASYELLARGDTLGVFQLDGGPMRSLLK 649

Query: 634  GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQG 687
             M+PD  EDI A+++LYRPGP+  +    Y  RKN  ++++ IHP ++  L E    T G
Sbjct: 650  LMKPDNFEDISAVLALYRPGPMGANAHTDYALRKNKIQEVIPIHPELEEPLSEILGGTYG 709

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQVM +AQ L+GY+L +AD+LRRAMGKK K E+DKQ   F  G   NG S     
Sbjct: 710  LIVYQEQVMAVAQKLAGYTLGQADILRRAMGKKKKSELDKQFAGFSQGMQDNGYSMAAVK 769

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++++L  F+DY FNK+H+AAY VISY TA++K HY  E++AA +T   D+ +K   +  
Sbjct: 770  TLWDILLPFSDYAFNKAHSAAYGVISYWTAYLKAHYAPEYMAALLTSVGDDKDKSAIYLN 829

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLE 866
            + R+  I ++PP VN   ++F    N I + + AI+ VG      ++ A   +  + S +
Sbjct: 830  ECRRMGITVLPPDVNESALNFTPVGNDIRFGMGAIRNVGVNAVEAMVAAREKEGAYTSFK 889

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            D+  +V +   N+R +ESL+ AGA D   + R  L    +        +++N      ++
Sbjct: 890  DYLMKVPAVVCNKRTIESLIKAGAFDSLNHHRRALAMIHEEAIDSVITLKRNEAIGQFDL 949

Query: 927  FAHEKGTFSDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            FA      S+    I +          +   E+ +LG Y S HPL   + +L +   +  
Sbjct: 950  FAGFDEAESEASLSIEIPDLPEWEKKDKLSFERDMLGLYVSDHPLQGLEGLLSQHADQSI 1009

Query: 984  EESVAT---IRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +A      G  I +A M+ S  ++     G+        +     E  FF
Sbjct: 1010 TSIIAEDGPHDGAIITIAGMITSLSRRIAKASGNAYARAEIEDLGGSIEVMFF 1062


>gi|319794191|ref|YP_004155831.1| DNA polymerase iii, alpha subunit [Variovorax paradoxus EPS]
 gi|315596654|gb|ADU37720.1| DNA polymerase III, alpha subunit [Variovorax paradoxus EPS]
          Length = 1172

 Score =  711 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/1050 (38%), Positives = 598/1050 (56%), Gaps = 45/1050 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   ++ ++   AAD+QPA+AITD NNLF A++F ++    G++P+
Sbjct: 2    FVHLRLHTEFSVVDGTNRIDEVIKAAAADKQPALAITDLNNLFGAVKFYKQGRGKGVKPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ--S 128
            IG ++ I+                 +  +VLLV   EGY  L EL++R +  + G+    
Sbjct: 62   IGAEIFIE---------GLGKEPGVLTRLVLLVQNMEGYLSLSELLARAWTQNVGRGQSQ 112

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                L WL+E+ + GLI L+G  +GP+         + A +  L    +F  R Y+ LQR
Sbjct: 113  AACKLEWLEEL-SGGLIALSGAQAGPLGVPLLQGQGERAAELALKLAGMFPHRFYIELQR 171

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D       V+LA   +LP+VAT+   F   +DYEAH+  + ++   ++    R R
Sbjct: 172  AGRPEDEPHVIAAVKLAARLKLPVVATHPVQFAERQDYEAHEARVCISEGEILGNPRRVR 231

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T + Y K+ +EM ++F+D+P AL NTVEIA+RC+  L +  P LP F      +  + 
Sbjct: 232  KFTEEQYFKSTAEMQALFADVPSALANTVEIAKRCNLTLVLGKPQLPDFPTPFVSEGVRM 291

Query: 307  E-ENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              ++  R ++  GLE     L   A  +      Y +RL+FE+N I  M F GYFLIV D
Sbjct: 292  PIDDFFRQESFEGLEVRLAHLYPDAAKRDAERPRYVERLEFEINTILNMGFPGYFLIVGD 351

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK+N  PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFDIDF
Sbjct: 352  FIKWAKENGCPVGPGRGSGAGSLVAYALKITDLDPLEYKLLFERFLNPERVSMPDFDIDF 411

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI YV++KYG   V+QI TFG++ A+AA+RDVGR L M Y   D + KLIPN 
Sbjct: 412  CQGNRDRVIDYVKDKYGRNAVSQIATFGTMAARAAIRDVGRVLDMSYMFCDGISKLIPNK 471

Query: 483  PAHPVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
            P   V+                AI  + +  +    +  V  L+E++QKLEG+ R+   H
Sbjct: 472  PGMSVTLQYPPEKKIEGDKNNYAIEMEPQLAQRIEKEEEVRMLVELAQKLEGMTRNIGMH 531

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT---LTLLQKS 585
            A G++I    L+   P+Y+   SD  V+Q++   +E  GL+KFDFLGL T   L + +  
Sbjct: 532  AGGVLIAPGKLTDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAKDF 591

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            +    +         IP  D  TY L +   T  +FQ ES GM+  L+  +P  +ED+IA
Sbjct: 592  IVARHKGQENFAFENIPLKDAATYRLFSEGKTEAVFQFESRGMQGMLKDARPTRLEDLIA 651

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            L +LYRPGP+D I  +  RK+G+E++   HP +  ML ET G+++YQEQVMQ AQ+L GY
Sbjct: 652  LNALYRPGPMDLIPSFVARKHGREEVEYPHPAVAEMLSETYGIMVYQEQVMQTAQILGGY 711

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKS 764
            SL  AD+LRRAMGKK  EEM + +E+F +GA + +GI +  A  IF+L+ KFA YGFNKS
Sbjct: 712  SLGGADLLRRAMGKKKLEEMAEHREKFRAGALATHGIPQDKADEIFDLMEKFAGYGFNKS 771

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNT 823
            HAAAY++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DA++   I   PP VN 
Sbjct: 772  HAAAYSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKLLFEDAQKNFGITFEPPDVNR 831

Query: 824  PCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRV 881
                F+ V D  I Y L A+KG G      ++ A  +  PF SL DFC R+D +++N+R 
Sbjct: 832  GNYRFEPVTDKVIRYGLGAVKGTGQLAVEAVVRAREEGGPFKSLFDFCVRIDRQRINKRT 891

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-GTFSDKITL 940
            +E+L+ AGA D    +R  L+ S+D   ++A            +IF   + G+ + +  L
Sbjct: 892  VEALIKAGAFDAIQQNRAALIASVDRAFEFASATA--ANAAQVDIFGDAEHGSATAEPDL 949

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
               +      R   E+  +GFY SGH  D     +R+   +   + + +       +A +
Sbjct: 950  VDATPWGVKERLTLEKTAIGFYLSGHLFDEVSHEVRRFCKREIGDLLDSRDQQ--VIAGI 1007

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            V   +    ++G R+      + ++  +A 
Sbjct: 1008 VSDFRVINGQRG-RLAIFKLDDKSESIDAT 1036


>gi|160891291|ref|ZP_02072294.1| hypothetical protein BACUNI_03740 [Bacteroides uniformis ATCC 8492]
 gi|317481161|ref|ZP_07940236.1| DNA polymerase III [Bacteroides sp. 4_1_36]
 gi|156859512|gb|EDO52943.1| hypothetical protein BACUNI_03740 [Bacteroides uniformis ATCC 8492]
 gi|316902657|gb|EFV24536.1| DNA polymerase III [Bacteroides sp. 4_1_36]
          Length = 1265

 Score =  711 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1147 (31%), Positives = 566/1147 (49%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   -------------------KA--CAAGI---------------QPIIGCQLDIDMQDNLK 84
                               +     A I               +PI+GC++ +       
Sbjct: 63   KGEIKDLKKRIAGIESGEIECEDKEAEIADCRAKMAEAESKLFKPIVGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVS  +         R   S L++   EGL
Sbjct: 120  MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +    +  + AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 178  IVCSACIGGEVPKKIINDQLEEAEEAVRWYKNLFGDDYYLELQRHKATVPRANHEAYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +   +++++LA  +++ ++ +N+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  QKANAKLLELARKYDIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K ++EM ++F D+PEAL NT+EI  +  +    HAPI+P F   E    ++        
Sbjct: 298  MKTKAEMNALFEDVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 357

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L   A  G +      
Sbjct: 358  KDLFDEFTQDENGKVVLDEDAANAKIKRLGGYDKLYRIKLEADYLAKLAFDGAKKLYGDP 417

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                   + + ++RL FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS 
Sbjct: 418  L------SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSA 471

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V  KYG E+VA 
Sbjct: 472  VAYCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAH 531

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL 503
            IIT+G++  K A++DV R  ++P S+ DRLCKL+P+           AIA     + A  
Sbjct: 532  IITYGTMATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEA 591

Query: 504  -ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558
              DP V   ++ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+
Sbjct: 592  SPDPLVRDTMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL+++++++  +   RG+++D+  I   D  TY L     T
Sbjct: 652  EGSVIEDTGLIKMDFLGLKTLSIIKEAVANVRLHRGLELDIDKISISDPATYKLYCDGRT 711

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+
Sbjct: 712  IGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPI 771

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FISG  
Sbjct: 772  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFISGGQ 831

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + 
Sbjct: 832  KNGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLA 891

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA 856
            N+  I K   + +   I  + P VN   + F V  +  I + L A+KGVG    + IME 
Sbjct: 892  NITDITKLMDECKAMGINTLGPDVNESNLKFTVNKEGNIRFGLGAVKGVGEGAVQSIMEE 951

Query: 857  S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907
               + PF  + DF  RV+    N++ LE L  AG  D F    R Q           L+ 
Sbjct: 952  REKNGPFKGIFDFVQRVNLTACNKKNLECLALAGGFDSFPELKREQYFAVNSKNEVFLET 1011

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E         +      +   R   E+ ++G Y S HP
Sbjct: 1012 LVRYGNRYQADQAAAANSLFGGENVVDIATPEIPVAERWSDLDRLNRERDLVGIYLSAHP 1071

Query: 968  LDVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y  +L  +      E      + G  I +  +V + ++  ++ G+  G     + + 
Sbjct: 1072 LDEYSVVLEHVCNTHMTELEDKTALVGREITMGGIVTAVRRGISKNGNPYGIAKIEDYSG 1131

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1132 SAELPFF 1138


>gi|126663019|ref|ZP_01734017.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium BAL38]
 gi|126624677|gb|EAZ95367.1| DNA polymerase III, alpha subunit [Flavobacteria bacterium BAL38]
          Length = 1512

 Score =  711 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/1092 (32%), Positives = 556/1092 (50%), Gaps = 81/1092 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K  ++ HL  H+ +S+L+  +++N+++   A  + PA+A+TDT N+  A  F        
Sbjct: 257  KDAAYAHLHNHTQFSVLQSTIAINDLVKASAKFKMPAVAMTDTGNMMGAFHFVSAVMNHN 316

Query: 67   ---------------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
                                 I+PI+GC+ +I      K              +VLL   
Sbjct: 317  KAAKAKIEAAIEAGEEPTEIEIKPIVGCEFNICDDHKDKTKKDNGN------QVVLLAKN 370

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
             +GY  L ++ S  Y  D      RI    + +   E +++L+G   G I          
Sbjct: 371  KKGYHNLAKMSSIAYT-DGFYYVPRIDRKIVAQY-KEDIMVLSGNLYGEIPSKILNVGES 428

Query: 166  VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEED 224
             AE+ L+ +K+ FG   Y+ L RH+  D  R    ++  A  H + L+ATNN+ ++++ED
Sbjct: 429  QAEEALIWWKEQFGSDFYLELMRHKQEDENRVNQTLIAFAKKHNVKLIATNNTYYVNKED 488

Query: 225  YEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
              AHD+L+ V      +                ++Y K+  EM  +F+DLPEA+ N  EI
Sbjct: 489  ANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSGDEMKQLFADLPEAIINIQEI 548

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEEN--------ELRNKAVAGLEVRLAQGAIA 329
              +          +LP+F   +  ++ ++ E+         LR+    G E R  +    
Sbjct: 549  IDKVEAYSLYRDVLLPKFKIPDEFEVPEDAEDGGVRGENNYLRHLTYLGAEKRYPE---- 604

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                  D ++RLDFEL  I+   + GYFLIV DFI  A+K ++ VGPGRGS AGS  AY 
Sbjct: 605  ---LTDDIKERLDFELLTISNSGYPGYFLIVQDFIAEARKMDVSVGPGRGSAAGSAVAYC 661

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L IT+IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV NKYG  +VAQIIT+
Sbjct: 662  LGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGSNQVAQIITY 721

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI--ADDSRFREARLADPS 507
            G +  K+A+RD  R L +P  + DR+ KLIP       +L      D+S  ++A  ++  
Sbjct: 722  GKMATKSAIRDTARVLDLPLFEADRIAKLIPGMMPSKWNLARFLAEDESEVKKALRSEEF 781

Query: 508  VD---------------RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
                               ++ ++ LEG  R+   HA G++I    ++  VP+     SD
Sbjct: 782  DKVKELIEIANSEDLAGETIQQAKVLEGSMRNTGIHACGVIITPSDITNFVPVTTAKDSD 841

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHL 611
            L VTQF+    E AGL+K DFLGLKTLTL++ ++  +  R     D    P DD +TY L
Sbjct: 842  LYVTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRLGIDLDPDNFPIDDEKTYEL 901

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
                 T+G+FQ ES GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RKNG+E+I
Sbjct: 902  FQRGETVGVFQYESPGMQKYMKDLKPTVFADLIAMNALYRPGPLEYIPSFVRRKNGEEEI 961

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
                   +  L ET G+ +YQEQVM ++Q L+G+S  +ADVLR+AMGKK  E ++K K +
Sbjct: 962  KYDLEACEEYLGETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKQIEVLNKMKPQ 1021

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            FI+ A++ G    +   I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA 
Sbjct: 1022 FINQAAEKGHDPVVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAV 1081

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTA 850
            ++  M++++++  F ++ ++  +Q++ P VN     F V +N  + + + A+KGVG    
Sbjct: 1082 LSNNMNDIKQVSFFMEECKRMGLQVLGPDVNESYYKFTVNENYAVRFGMGAVKGVGANAV 1141

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS----- 904
              I++   + P+ S+ D   ++D +  N++  ESL  AG  D F    R Q         
Sbjct: 1142 DTIVQNRKEAPYKSIFDVAKKIDLRAANKKAFESLALAGGFDGFTDTHRAQYFHHDGDGI 1201

Query: 905  --LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              L+   +Y    ++N  +   ++F         +  +      ++  +   E+ V+G Y
Sbjct: 1202 TFLEKAIRYGSKFQENENSSQVSLFGDASEVQIAEPIVPPCDDWSTMEKLAKEKEVVGIY 1261

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             SGHPLD YK  ++       E   +  +  G N+    +V + Q +  + G+  G    
Sbjct: 1262 ISGHPLDDYKYEMKYFCNAKLESLKSLEQHVGKNLSFGGIVTNVQHRTAKNGNGWGSFVL 1321

Query: 1021 SEPAKEYEANFF 1032
                + YE   F
Sbjct: 1322 EGYEESYEFRIF 1333


>gi|240949503|ref|ZP_04753843.1| DNA polymerase III subunit alpha [Actinobacillus minor NM305]
 gi|240296076|gb|EER46737.1| DNA polymerase III subunit alpha [Actinobacillus minor NM305]
          Length = 1142

 Score =  711 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/1031 (38%), Positives = 586/1031 (56%), Gaps = 38/1031 (3%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            ++ G   + +++    AD   A+A+TD  N    ++F  ++ ++G++PIIG  + +  + 
Sbjct: 1    MINGLAKVKSLVKTAVADNMVAMALTDFTNFCGLVKFYGESLSSGLKPIIGADILVRPEP 60

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
              +           V  + LL    +GY  +  L+S  Y          +  +WL E   
Sbjct: 61   ESE----------EVYELTLLAKNNQGYHNITLLLSMAYQQGYV-DLPLVEKAWLAEY-N 108

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQV 200
            EG+I+L+GG SG + +A    + + AE     +++ F +  Y ++ R    D  R  S V
Sbjct: 109  EGIIVLSGGRSGDVGKALLKENVKEAENLTAFYQQYFPNHFYFSICRTGRADEERYISAV 168

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PRVTPDHYLKNRSE 259
            V  A    +P+VA N+ +FL E+D+EAH++ +A+  S  +    R  + +P  Y ++  E
Sbjct: 169  VPFANQKGIPIVAVNDVVFLKEDDFEAHEIRVAIHDSYTLDDPKRLKKYSPQQYFRSEEE 228

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F+DLP ALENT+EIA+RCS  +++                    E  L  K+  GL
Sbjct: 229  MCRLFADLPSALENTIEIAKRCSVTVRLGEYF-----LPNFPTGDLTTEAFLIKKSEEGL 283

Query: 320  EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            E RLA        +    + Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGP
Sbjct: 284  EERLAFLFPDPEERASKREVYDKRLKVELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGP 343

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D RD VI +V  
Sbjct: 344  GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDHVAE 403

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             YG + V+QIITFG++ AKA +RDVGR L  PYS VDR+ KLIP DP   +  +A A + 
Sbjct: 404  TYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRISKLIPPDPGMTLE-KAFAAEP 462

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
            +  E   +D  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 463  KLTELYDSDEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDSEGLHPVT 522

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVDLSLIPFDDHETYHL 611
             F+   +E AGL+KFDFLGL+TLT+++ +L+ +  R        V +  IP +D +++ L
Sbjct: 523  HFDKNDVEYAGLVKFDFLGLRTLTIIKWALEMINARLTAEGKEPVRIESIPLNDKKSFDL 582

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK- 670
            L    T  +FQLES GM+  +  ++PDC EDIIALV+L+RPGP+++ +V N       K 
Sbjct: 583  LLAAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGKE 642

Query: 671  ------IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                      H  + P+L+ T GVI+YQEQVMQIAQ L+GY+L  AD+LRRAMGKK  EE
Sbjct: 643  EVSYPDAQYQHECLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEE 702

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M  Q+E F  GA    I   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 703  MAAQREIFEKGAIDKNIDGDLAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 762

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
             EF+AA M+ EMDN +KI     +     + ++PP +N+    F V +   I Y L AIK
Sbjct: 763  AEFMAAVMSSEMDNTDKIVGLYDECINMGLTVVPPDINSGKHHFSVNEKGEIVYGLGAIK 822

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      I+EA   +  F  L D  +RVD KK+NRR  ++L+ +G+LD  G  R  L+
Sbjct: 823  GVGEGPIDAILEARQKEGIFKDLFDLTARVDLKKINRRTFDALIMSGSLDKLGPHRAALM 882

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGF 961
            ++L++  K +    K       ++F     T  + +         +  V  + E+  LG 
Sbjct: 883  KNLEDALKASDQHTKMEALGQSDMFGVLTETPEEVQNAYANTPKWSEQVVLDGERATLGL 942

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y SGHP+  +   L         E   T RG  + +A +V+S +   T++GSRIG  T  
Sbjct: 943  YLSGHPIGRFLKELAHYAPVRLNELQPTYRGQMVTVAGIVMSYRVAVTKRGSRIGIATIE 1002

Query: 1022 EPAKEYEANFF 1032
            + + + +   F
Sbjct: 1003 DRSGKLDITLF 1013


>gi|297199041|ref|ZP_06916438.1| DNA polymerase III subunit alpha [Streptomyces sviceus ATCC 29083]
 gi|197716004|gb|EDY60038.1| DNA polymerase III subunit alpha [Streptomyces sviceus ATCC 29083]
          Length = 1179

 Score =  711 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/1067 (31%), Positives = 537/1067 (50%), Gaps = 47/1067 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F HL VH+ YSLL+GA  L ++ +         IA++D  NL  A +F   A  
Sbjct: 1    MSKPP-FTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHTAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG+ PIIG +  +  +                    +         +    + G   L +
Sbjct: 60   AGVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTMWAVNSTGLHNLFK 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S  Y     ++  R+    + +  +EG++  TG  SG +           A K    +
Sbjct: 120  LSSDAYAEGWLQKWPRMDKETISQW-SEGIVASTGCPSGELQTRLRLGQYDEALKAAADY 178

Query: 175  KKLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG DR ++ L  H     +R    ++++     +P + TN+S +    +  AHD L+
Sbjct: 179  QDIFGKDRYFLELMDHGIEIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEATAHDALL 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             +     +S  DR R     Y    S       D  +A +         + ++       
Sbjct: 239  CIQTGKNLSDPDRFRFDGTGYYLK-STDEMYAVDSSDAWQEGCANTLLVAEMVDTTGMFE 297

Query: 293  PRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             + +  + D      E    + +   G+E R   G        +D +++ D+E++VI +M
Sbjct: 298  AKNLMPKFDIPEGYTEVTWFKEEVRRGMERRFPGGV------PEDRQKQADYEMDVIIQM 351

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+
Sbjct: 352  GFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPE 411

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+ 
Sbjct: 412  RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471

Query: 472  VDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DRL K +P D     +        S    ++    R     +P V ++++ ++ +EGL 
Sbjct: 472  GDRLTKAMPADVLGKGIDLNGITDPSHPRYSEAGEIRSMYENEPDVKKVIDTAKGVEGLV 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ LT++
Sbjct: 532  RQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIM 591

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  +   +G+ +++  +P DD +T+ LL    TLG+FQ +   MR  L  MQPD  E
Sbjct: 592  DDAIKMVKANKGIDLEMLALPLDDPKTFELLCRGDTLGVFQFDGGPMRSLLRQMQPDNFE 651

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695
            DI A+ +LYRPGP+     + Y  RKNG+++I  IH  ++  L+E    T G+I+YQEQV
Sbjct: 652  DISAVSALYRPGPMGMNSHINYAERKNGRQEITPIHKELEEPLEEVLAVTYGLIVYQEQV 711

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
             + AQ+++GYSL EAD+LRR MGKK  +E+ K    F +GA KNG S      ++++L  
Sbjct: 712  QKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFTIFQAGAQKNGYSDEAIQALWDVLVP 771

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNK+H+AAY ++SY TA++K +YP E++AA +T   D+ +K   +  + R+  I+
Sbjct: 772  FAGYAFNKAHSAAYGLVSYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMKIK 831

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            ++PP+VN    +F   GD+ I + L A++ VGT     I+ +      + S  D+  +V+
Sbjct: 832  VLPPNVNESEHNFAAQGDDVILFGLEAVRNVGTNVVESIIRSRKAKGKYASFPDYLDKVE 891

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +   N+R  ESL+ AGA D  G++R  L    D++      V++       ++F      
Sbjct: 892  AVACNKRTTESLIKAGAFDTMGHTRKGLTAHFDSMIDNVVAVKRKEAEGQFDLFGGMGEA 951

Query: 934  FSDKITLE-----KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987
             S +              + +     E+ +LG Y S HPL   + +L      G  +   
Sbjct: 952  DSSEPGFGLDVEFTTDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIAQLTG 1011

Query: 988  -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1012 GEHADGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1058


>gi|261393166|emb|CAX50778.1| DNA polymerase III alpha subunit [Neisseria meningitidis 8013]
          Length = 1144

 Score =  711 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/1038 (38%), Positives = 583/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+PI    + I   D                  +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPIGAADVRIGNPD----------APDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAVALKYAAWFPDAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M   FSDLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPSQFFIPPETMAERFSDLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A    +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSLDDYLVKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++  D+L K
Sbjct: 406  FDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSK 465

Query: 478  LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+    A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  VDVGTIPLDDQTAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    D +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMNNAD--QKAANTNQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++              +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQVEIMV 1014


>gi|315585849|gb|ADU40230.1| DNA-directed DNA polymerase III alpha subunit [Helicobacter pylori
            35A]
          Length = 1211

 Score =  711 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1078 (34%), Positives = 583/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     ++             A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIRMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +    KA  GL+ RL    +        Y++RL+
Sbjct: 294  NPPTPPSFKFTKSYAQNEGLNFEDDASYFAYKAREGLKERL---VLVPKEKHDQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDTQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E +  +  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVACYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|224025746|ref|ZP_03644112.1| hypothetical protein BACCOPRO_02487 [Bacteroides coprophilus DSM
            18228]
 gi|224018982|gb|EEF76980.1| hypothetical protein BACCOPRO_02487 [Bacteroides coprophilus DSM
            18228]
          Length = 1265

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1147 (31%), Positives = 578/1147 (50%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---------- 59
             FVHL VH+ YS+L+G  S+  ++DK  A+    IA+TD  ++F   EF           
Sbjct: 3    DFVHLHVHTQYSILDGQASIPRLVDKAIANGMRGIAVTDHGDMFGIKEFFNYVNKKNGGT 62

Query: 60   -----------------------------------QKACAAGIQPIIGCQLDIDMQDNLK 84
                                               + A     +PIIGC++ +      +
Sbjct: 63   NGEIKDLKKKIAALESGKAESENPEAELAACKEQLEAARKKLFKPIIGCEMYVA---RRR 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            + ++      +   +V+L    +GY  LI+LVS+ +         R   + L++   EGL
Sbjct: 120  LEDKDGKQDQSGYHLVVLAKNLKGYHNLIKLVSKAWTKG-FYMRPRTDRAELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG-----------YD 193
            I+ +    G + R       + AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 178  IVCSACLGGEVPRRISAGQLEEAEEAIRWYKNLFGDDYYLELQRHKATVPRANHETFKLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                 ++++ A  +++ LV TN+  F+ EE+ EAHD L+ ++    +   +R   T   +
Sbjct: 238  EVVNQKLIEYARKYDIKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K R EM  IF+D+PEAL NTV+I  +  F    HAPI+P F+  E    ++E       
Sbjct: 298  MKTREEMNEIFADVPEALSNTVDICDQVEFYSIDHAPIMPTFVIPESFGTEEEYRKKFTE 357

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L   A  G   R  + 
Sbjct: 358  KDLFDEFTQDENGNVVMDEASAKAKIERLGGYEKLYRIKLEADYLAKLAYDGARRRYGE- 416

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                    ++ ++R+ FEL+++  M F GYFLIV DFI  A++  ++ VGPGRGS AGS 
Sbjct: 417  -----ELDEEVQERIKFELHIMKTMGFPGYFLIVQDFISAAREKLDVSVGPGRGSAAGSA 471

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R  V+ +V  KYG E+VA 
Sbjct: 472  VAYCLGITQIDPIKYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAH 531

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREA-R 502
            IIT+G++  K A++DV R  ++P S+ DRLCKLIP+           AIA     + A  
Sbjct: 532  IITYGTMATKLAIKDVARVQKLPLSESDRLCKLIPDKIPDKKLNLPNAIAYVPELQAAEV 591

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558
             +DP +   ++ ++ LEG  R+   HA G +I    ++  VP+      +    + VTQ+
Sbjct: 592  SSDPILRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL++++++L+ +   +G+ +++  IP DD  TY L +   T
Sbjct: 652  EGSVIEDTGLIKMDFLGLKTLSIIKEALENIKNSKGIVLNIDEIPIDDPATYRLYSDGRT 711

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+
Sbjct: 712  IGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPI 771

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  
Sbjct: 772  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGK 831

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA+M+  + 
Sbjct: 832  KNGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAATMSRNIS 891

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-E 855
            N+ +I K   +++   I+++ P VN   + F V     I + L AIKGVG +  + I+ E
Sbjct: 892  NITEITKLMDESKATGIRVLGPDVNESLLKFSVNRRGDIRFGLGAIKGVGESAVQSILSE 951

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS-------LDN 907
               + P+ S+ DF  RV+    NR+ +E+L  AG  D FG   R             ++ 
Sbjct: 952  REKNGPYKSIFDFVQRVNLSACNRKNIENLALAGGFDSFGNIKREDFFMKNSKDETFVET 1011

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E         +      +   R   E+ ++G Y S HP
Sbjct: 1012 LVRYGSKYQMDKAAAINSLFGGEHEVEVATPEIISAPAWSDLERLNKERELVGIYLSAHP 1071

Query: 968  LDVYKPILRKMGIKGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y  +L  +     EE      ++  ++ L  +V   ++  T+ G   G     + + 
Sbjct: 1072 LDEYAVVLENVCNVHMEELSNLTPLQNRDLILGGIVTGVREGYTKSGKPYGIAKVEDYSG 1131

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1132 VAEFAFF 1138


>gi|325996713|gb|ADZ52118.1| DNA polymerase III alpha subunit [Helicobacter pylori 2018]
 gi|325998307|gb|ADZ50515.1| DNA polymerase III alpha subunit [Helicobacter pylori 2017]
          Length = 1211

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1078 (34%), Positives = 584/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ LI L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLIFLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     N+             A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +KA  GL+ RL    +        Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAKEEGLDFEDDASYFAHKAREGLKERL---ILVPKEKHDQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNEIAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKIGVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N    DF V          + +I + L AIKGVG    ++I+E     
Sbjct: 831  RALEIEVMPPHINYSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERTKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F   +G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMEGGIKEQVVLDMVDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|208435328|ref|YP_002266994.1| DNA polymerase III alpha-subunit [Helicobacter pylori G27]
 gi|208433257|gb|ACI28128.1| DNA polymerase III alpha-subunit [Helicobacter pylori G27]
          Length = 1211

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1078 (34%), Positives = 584/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  ++      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     N+             A++    +
Sbjct: 115  FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +KA  GL+ RL    +        Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLDFEDDASYFAHKAREGLKERL---ILVPKEKHDQYQERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIGVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERISMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++ +  ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNDTARQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++ +LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELESILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V          + +I + L A+KGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L  LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLAHLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQVVLDMVDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|307638113|gb|ADN80563.1| DNA polymerase III alpha subunit [Helicobacter pylori 908]
          Length = 1211

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1078 (34%), Positives = 585/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ LI L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLIFLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     N+             A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +KA  GL+ RL    +        Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAKEEGLDFEDDASYFAHKAREGLKERL---ILVPKEKHDQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNEIAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKIGVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E     
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERTKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F   +G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMEGGIKEQVVLDMVDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|220912350|ref|YP_002487659.1| DNA polymerase III subunit alpha [Arthrobacter chlorophenolicus A6]
 gi|219859228|gb|ACL39570.1| DNA polymerase III, alpha subunit [Arthrobacter chlorophenolicus A6]
          Length = 1185

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1073 (34%), Positives = 552/1073 (51%), Gaps = 56/1073 (5%)

Query: 5    LEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +  S  SFVHL  H+ YS+L+GA  L  + D+      PA+A TD   LF A +F QKA 
Sbjct: 1    MTSSNDSFVHLHTHTEYSMLDGAARLGELFDETERLGMPALATTDHGYLFGAFDFWQKAQ 60

Query: 64   AAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            A GI+PIIG +  +                        +   +   + LL     G + L
Sbjct: 61   AKGIKPIIGVEAYVTPGTARGDKTRVRWGEENQRKDDISGGGSYTHMTLLSYNNVGMRNL 120

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
                S   L     +  R+    L    +EGLI  TG  SG +         + A +   
Sbjct: 121  FRASSIASLDSVFGKWPRLDRELLNTY-SEGLIATTGCPSGEVQTRLRLGQYREAVEAAA 179

Query: 173  TFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             F+ +FG +  +  L  H    +R     +++LA    LPLVATN+  +  E D +AH+ 
Sbjct: 180  EFRDIFGAENYFCELMDHGLDIERRVTGDLLRLAKELNLPLVATNDLHYTHEHDAKAHEA 239

Query: 231  LMAVAHSTVVSQKDRP-------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
            L+A+   + + +                +YLK+  EM  +F D PEA +NT+ IA RC  
Sbjct: 240  LLAIQSGSTLLEPTYDNGGSRFAFSGSGYYLKSPQEMRELFRDHPEACDNTLLIAERCEV 299

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                +A  +PRF     +D    E + L  +   GL+ R  +G         + R++ D+
Sbjct: 300  SFNTNANFMPRFPCPPGED----ETSWLVKEVDKGLQYRYPKG------IPDEVRKQADY 349

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL VI  M F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPLR  L+
Sbjct: 350  ELGVITSMGFPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLDPLRHGLI 409

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNPDR+SMPDFD+DF   RR EVI YV  KYG ERVA I+T+G+++ K AL+D  R
Sbjct: 410  FERFLNPDRVSMPDFDVDFDDRRRSEVIDYVTRKYGDERVAMIVTYGTIKTKQALKDSSR 469

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR---------FREARLADPSVDRLLEI 514
             L  P+S  ++L K +P          A   +           FR+    DP   ++ E 
Sbjct: 470  VLGYPFSMGEQLTKALPPAVMAKDIPLADIQNPESKRYSEAGDFRQLVSTDPEAAKVFET 529

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            +  +EGL R    HAAG+++   P+  ++P+ R  +    +TQF+    E  GLIK DFL
Sbjct: 530  ALGIEGLKRQWGVHAAGVIMSSDPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKMDFL 589

Query: 575  GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+ LT++  +L+ +   RG+ +DL  +  DD  +Y LL    TLG+FQL+   MR  L+
Sbjct: 590  GLRNLTIISDALENIKMNRGIDLDLENLELDDAPSYELLARGDTLGVFQLDGGPMRSLLK 649

Query: 634  GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQG 687
             M+PD  EDI A+++LYRPGP+  +    Y  RKNG ++++ IHP ++  LKE    T G
Sbjct: 650  LMKPDNFEDISAVLALYRPGPMGANAHTDYALRKNGIQEVIPIHPELEEPLKEILGGTYG 709

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQVM +AQ L+GYSL +AD+LRRAMGKK K E+DKQ   F  G   NG S     
Sbjct: 710  LIVYQEQVMAVAQKLAGYSLGQADILRRAMGKKKKSELDKQFAGFSQGMQDNGYSMAAVK 769

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++++L  F+DY FNK+H+AAY VISY TA++K HY  E++AA +T   D+ +K   +  
Sbjct: 770  TLWDILLPFSDYAFNKAHSAAYGVISYWTAYLKAHYAPEYMAALLTSVGDDKDKSAIYLN 829

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLE 866
            + R+  I ++PP VN   ++F      I + + AI+ VG      ++ A   +  F S +
Sbjct: 830  ECRRMGITVLPPDVNESALNFTPVGTDIRFGMGAIRNVGVNAVEAMVAARESEGAFTSFK 889

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            D+  +V +   N+R +ESL+ +GA D  G+ R  L    +        +++N      ++
Sbjct: 890  DYLMKVPAVVCNKRTIESLIKSGAFDSLGHHRRALAMIHEEAIDSVITLKRNEAIGQFDL 949

Query: 927  FAHEKGTFSDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            FA  +   S+    I +          +   E+ +LG Y S HPL   + +L +      
Sbjct: 950  FAGFEEAESEASLSIEIPDLPEWEKKDKLSFERDMLGLYVSDHPLQGLEGVLSQHAEMSI 1009

Query: 984  EESVAT---IRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +       G  + +A M+ S  ++     G+        +     E  FF
Sbjct: 1010 TTILGEDGPQDGAILTIAGMITSLSRRIAKASGNAYARAEVEDLGGSIEVMFF 1062


>gi|308183558|ref|YP_003927685.1| DNA polymerase III subunit alpha [Helicobacter pylori PeCan4]
 gi|308065743|gb|ADO07635.1| DNA polymerase III subunit alpha [Helicobacter pylori PeCan4]
          Length = 1211

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1078 (34%), Positives = 585/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     ++             A++    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKRIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +KA  GL+ RL    +        Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAKEEGLDFEDDASYFAHKAREGLKERL---ILVPKEKHDQYQERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQVILDMTDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|311899295|dbj|BAJ31703.1| putative DNA polymerase III subunit alpha [Kitasatospora setae
            KM-6054]
          Length = 1183

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/1068 (32%), Positives = 544/1068 (50%), Gaps = 52/1068 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SF HL VH+ YS+L+GA     +  +      PAIA++D  N+F A EF   A  + +
Sbjct: 2    ADSFAHLHVHTEYSMLDGAAKNGKLFAEAERLGMPAIAMSDHGNMFGAYEFFHAAAKSAV 61

Query: 68   QPIIGCQLDIDMQDNLKMT------------------NQGKTPFPTVPSIVLLVSTAEGY 109
            +PIIG +  +                            +  +       + +    A G 
Sbjct: 62   KPIIGIEAYVAPSSRFLKKQVFWAPGGQRPTGSDGEGGKDVSGGGRYTHMTMWAQNATGL 121

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
            + L +L S   + +      R+    +      G+I  TG  SG +         + A K
Sbjct: 122  RNLFKLSSLASM-EGYYMKPRMDRELIAA-NATGIIATTGCPSGEVQTRLRLGQYEEAVK 179

Query: 170  RLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                ++ +FG +  ++ L  H    +R   + +++LA    +PL+ATN+S +++ +  +A
Sbjct: 180  AAGAYQDIFGKENYFLELMDHGLSIERDVRADLLRLAKELGIPLLATNDSHYVTADQADA 239

Query: 228  HDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            HD L+ V         +R +     +Y+K   EM  +F DLPEA +NT+ IA R     +
Sbjct: 240  HDSLLCVGVGKNKDDPNRFKFNGSGYYVKTSEEMRELFRDLPEACDNTLAIAERIESYEE 299

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
            V   +         +   + + + LR K  AGL+ R           +Q+   R++ E+ 
Sbjct: 300  VFTYVDRMPQFDVPEG--ETQASFLRKKIAAGLQHRYGDN------PSQEVLDRVELEMG 351

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI  M F  YFL+VAD  Q+ + N IPVGPGRGS AGS+ +Y   IT +DPL   LLFER
Sbjct: 352  VITPMGFDAYFLVVADICQYGRDNGIPVGPGRGSAAGSMVSYLTGITQLDPLEHDLLFER 411

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R++ PD DIDF   +RD+++RYV +KYG    AQ+ TFG+++AKAA++D  R L 
Sbjct: 412  FLNPERINPPDVDIDFDDRQRDQMVRYVTDKYGSAYTAQVNTFGTIKAKAAVKDANRILG 471

Query: 467  MPYSQVDRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQK 517
             P+S  DR+ K +P D     V              + +  R     +P V ++++    
Sbjct: 472  YPFSMGDRITKAMPPDVMGKGVPLADLFNEKHPRYNEGTEIRSLYENEPDVKKIIDTGLG 531

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            +EGL R    HAA +++   PL +L+P++   +    +T F+    E  GLIK DFLGL+
Sbjct: 532  IEGLIRGTGVHAAAVILSSTPLLELIPLHMRDKDGTIITGFDYPSCEAMGLIKMDFLGLR 591

Query: 578  TLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             L ++   +  +   RGV VD+  IP DD  TY LL    TLG+FQL+   MR  L  M+
Sbjct: 592  NLGIIDHCIKIVKANRGVDVDIDNIPIDDPTTYQLLARGDTLGVFQLDGGPMRALLRLMK 651

Query: 637  PDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVII 690
            P    DI A+ +LYRPGP+       Y  RKNG+++I+ IHP ++  LK     T G+I+
Sbjct: 652  PTEFADISAVSALYRPGPMGMNSHTNYALRKNGQQEIIPIHPELEEPLKEVLGPTYGLIV 711

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQV + AQ+L+GYSL +AD+LRRAMGKK KE ++K+   F +G  + G S      ++
Sbjct: 712  YQEQVQRAAQVLAGYSLGQADLLRRAMGKKKKEVLEKEFVPFHAGCKERGYSDEAIQAVW 771

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            ++L  FA Y FNKSH+AAY ++SYQTA++K +YP E++AA +T   D+ +K+  +  + R
Sbjct: 772  DVLVPFAGYAFNKSHSAAYGLVSYQTAYLKANYPAEYMAALLTSVADDKDKMAIYLAECR 831

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFC 869
               I+I+ P VN   VDF    + + + L A++ VG      ++    A   + S  DF 
Sbjct: 832  AMGIRILSPDVNESVVDFTAVGSDVRFGLKAVRNVGVPVIESLVATREAKGKYTSFADFL 891

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             +V+    N+R ++SLV AGA D  G++R+ L    ++       V+K +    +++FA 
Sbjct: 892  DKVELVVCNKRTVDSLVKAGAFDSLGHTRLSLSTVHESAIDAVTGVKKQQAIGQDDLFAM 951

Query: 930  EKGTFSDKITLE---KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
              G  +  I L+                E+ +LG Y S HPLD  + IL K       + 
Sbjct: 952  LGGDDTPAIGLDFQLTDREWPRKQLLGLEREMLGLYVSSHPLDGAEHILTKNRDVSLVDL 1011

Query: 987  VAT-IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +      +RL+ ++    ++  + G+    +T ++     E  FFP
Sbjct: 1012 LNSGRTEGEVRLSGLITGVDRRINKAGNAWAIITLADRDGSIEVLFFP 1059


>gi|296140319|ref|YP_003647562.1| DNA polymerase III subunit alpha [Tsukamurella paurometabola DSM
            20162]
 gi|296028453|gb|ADG79223.1| DNA polymerase III, alpha subunit [Tsukamurella paurometabola DSM
            20162]
          Length = 1183

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/1071 (30%), Positives = 527/1071 (49%), Gaps = 51/1071 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL  H+ YS+L+GA  ++ +  +       A+ ++D  N+F A +F   A  
Sbjct: 1    MPAQDSFVHLHNHTEYSMLDGAAKVDPLFAEAKRLGMTAVGMSDHGNMFGASDFYNTAVK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
              I+PIIG +  I  +                    +       + ++   A G + L +
Sbjct: 61   YDIKPIIGIEAYIAPESRFNTKRVRWGDPSQKSDDVSGSGAYTHMTMVAENATGLRNLFK 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S   +  Q  +  R+    + E   EG+I  TG  SG +         Q A +    +
Sbjct: 121  LSSLASIEGQLGKWSRMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHEQEALEAAAKW 179

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +++FG +  Y+ L  H    +R     ++++     +  +ATN+  +++++  E+H  L+
Sbjct: 180  QEIFGKENFYLELMDHGIDIERRVREGLLEIGRKLGIKPLATNDCHYVTKDKAESHGALL 239

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAP 290
             +     +S   R +   D Y    ++ +    D     A ++TVEI  R     +V   
Sbjct: 240  CIQTGKTLSDPTRFQFDGDGYYLKSAQEMRELWDAQVPGACDSTVEIGERVQSYKEVWEH 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                      ++    +E+ L ++ + GL  R   G         DY +R  +EL+VI  
Sbjct: 300  KDRMPRFPVPEN--HTQESFLESEVMDGLNRRFPDG------PPPDYVERARYELSVINE 351

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F  YFL+V D I  A +  I VGPGRGS AGS+ A+AL IT+IDP+   LLFERFLNP
Sbjct: 352  MGFPAYFLVVGDLIAHAHEVGIRVGPGRGSAAGSLVAWALGITNIDPIPHGLLFERFLNP 411

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR--ALQMP 468
            +R+SMPD DIDF   RR E+I Y   K+G ++VAQ+ITFG+++ KAA++D  R    Q  
Sbjct: 412  ERVSMPDIDIDFDDRRRGEMITYASEKWGSDKVAQVITFGTIKTKAAIKDSARVIYGQPG 471

Query: 469  YSQVDRLCKL-IPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLE 519
            YS  DR+ K   P   A  +S         +   +    R+    DP V ++ +++  LE
Sbjct: 472  YSIADRITKALPPPIMAKDISVKGITDPAHERYKEAVEVRQLIETDPDVKKIYDMALGLE 531

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL R+A  HA  +++   PL+  +P+++  +    +T ++    E  GL+K DFLGL+ L
Sbjct: 532  GLIRNAGVHACAVIMSCDPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNL 591

Query: 580  TLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  +L  +   RG+ +D+  +P DD  TY LL    TLG+FQL+   MR  L  MQP 
Sbjct: 592  TVIGDALANIKHNRGIDLDMDQLPLDDETTYQLLQRGNTLGVFQLDGGPMRDLLRRMQPT 651

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQ 692
              EDI+A+ +LYRPGP+  +    Y +RKNG++++  IHP ++      L ET G+I+YQ
Sbjct: 652  KFEDIVAVGALYRPGPMGVNAHNDYADRKNGRQQVKPIHPELEEPLAEILSETFGLIVYQ 711

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQ+MQIAQ ++GYSL +AD+LRRAMGKK KE +D+    F  G   NG S+     ++E 
Sbjct: 712  EQIMQIAQKVAGYSLGQADLLRRAMGKKKKEILDEAYGGFQQGMLDNGFSQPAITALWET 771

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  FA Y FNKSHAAAY ++SY TA++K +YP E++AA +T   D+ +K   +  D R+ 
Sbjct: 772  VLPFAGYAFNKSHAAAYGLVSYWTAYLKANYPAEYMAALLTSVGDDKDKAAIYLGDCRRL 831

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
             I ++PP VN     F      I + + +++ VG      I+    +   F S  D+ ++
Sbjct: 832  GITVLPPDVNESFHAFTSVGEDIRFGMGSVRNVGEGVVASIVNTREEKGNFTSFSDYLAK 891

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            ++    +++V ESL+ AG  D   + R  L     +  +     +K       ++F    
Sbjct: 892  IEVAACSKKVTESLIKAGGFDSLEHPRKGLFLVHSDAIESVLSTKKAEAVGQFDLFGSMG 951

Query: 932  GTFSDKITLEKF-------SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                    ++            +   +   E+ +LG Y S HPLD  + ++         
Sbjct: 952  DEGGGTEPIDDVFTIKVPDEEWDGKHKLALEREMLGLYVSAHPLDGVEHVIAAQTDTPIP 1011

Query: 985  ESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              V      G  + +  ++ S  ++  + G+        + +   E  FFP
Sbjct: 1012 AIVEGDVKDGTQVTVGGILQSVNRRVNKNGAPFASAQIEDLSGGIEVFFFP 1062


>gi|198274347|ref|ZP_03206879.1| hypothetical protein BACPLE_00491 [Bacteroides plebeius DSM 17135]
 gi|198272837|gb|EDY97106.1| hypothetical protein BACPLE_00491 [Bacteroides plebeius DSM 17135]
          Length = 1265

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1147 (31%), Positives = 575/1147 (50%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---------- 59
             FVHL VH+ YS+L+G  S+  ++DK  A+    IA+TD  ++F   EF           
Sbjct: 3    DFVHLHVHTQYSILDGQASIPRLVDKAMANGMRGIAVTDHGDMFGIKEFFNYVNKKNGGT 62

Query: 60   -----------------------------------QKACAAGIQPIIGCQLDIDMQDNLK 84
                                               + A     +PI GC++ +      +
Sbjct: 63   NGEIKDLKKKIAALESGKEESENPEAEIAACKEQLEAAKKKLFKPIFGCEMYVA---RRR 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            + ++   P  +   +V+L    +GY  LI+LVS+ +         R   + L++   EGL
Sbjct: 120  LEDKEGKPDQSGYHLVVLAKNLKGYHNLIKLVSKAWTKG-FYMRPRTDRAELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + R       + AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 178  IVCSACLGGEVPRRITAGQFEEAEEAIRWYKNLFGDDYYLELQRHKATVARANHEVYPMQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +    ++++ A  + + LV TN+  F+ EE+ EAHD L+ ++    +   +R   T   +
Sbjct: 238  QVVNEKLIEYAKKYNIKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K R EM  +F+D+PEAL NTVEI  +  F    HAPI+P F   E    ++E       
Sbjct: 298  MKTREEMNEVFADVPEALSNTVEICDKVEFYSIDHAPIMPTFAIPEDFGTEEEYRKKFTE 357

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L   A  G + R  + 
Sbjct: 358  KDLFDEFTRDENGNVVMDEAAAKAKIERLGGYEKLYRIKLEADYLAKLAYDGAKRRYGEN 417

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                   +++ ++R+ FEL+++  M F GYFLIV DFI  A+   ++ VGPGRGS AGS 
Sbjct: 418  L------SEEVQERIKFELHIMKTMGFPGYFLIVQDFINAARHQLDVSVGPGRGSAAGSA 471

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R  V+ +V  KYG E+VA 
Sbjct: 472  VAYCLGITQIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAH 531

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREA-R 502
            IIT+G++  K A++DV R  ++P S+ DRLCKLIP+           AIA     +EA  
Sbjct: 532  IITYGTMATKLAIKDVARVQKLPLSESDRLCKLIPDKLPDKKLNLPNAIAYVPELQEAEV 591

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558
              +P +   ++ ++ LEG  R+   HA G +I    ++  VP+      +    + VTQ+
Sbjct: 592  SPNPVLRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL++++++++ + Q +G+ +++  +P DD  TY L +   T
Sbjct: 652  EGSVIEDTGLIKMDFLGLKTLSIIKEAIENIRQSKGIVLNIDEVPIDDPATYRLYSEGRT 711

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+
Sbjct: 712  IGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPI 771

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  
Sbjct: 772  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGK 831

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA+M+  + 
Sbjct: 832  KNGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAATMSRNIS 891

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-E 855
            N+ +I K   + +   ++++ P VN   + F V     I + L AIKGVG +  + I+ E
Sbjct: 892  NITEITKLMDECKSMGVKVLGPDVNESNLKFSVNYRGDIRFGLGAIKGVGESAVQSILDE 951

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL------QSLDNI 908
               +  F ++ DF  RV+    NR+ +E+L  AG  D F G  R          +S  +I
Sbjct: 952  RRKNGEFKNIFDFVQRVNLSACNRKNIENLALAGGFDSFSGIKREDFFVKNAKDESFSDI 1011

Query: 909  Q-KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +Y    + ++     ++F  E         +      +   R   E+ ++G Y S HP
Sbjct: 1012 LVRYGNKYQLDKAAAANSLFGGEHEVEVATPEIVPAPSWSDLERLNKERDLVGIYLSAHP 1071

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD +  IL  +      E        N  + L  +V   ++  T+ G   G     + + 
Sbjct: 1072 LDEFAVILENVCNVHMAELTDLTPLQNHDLVLGGIVTGVREGYTKTGKPYGIAKVEDYSG 1131

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1132 TAEFAFF 1138


>gi|261838735|gb|ACX98501.1| DNA polymerase III alpha subunit [Helicobacter pylori 51]
          Length = 1211

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1078 (34%), Positives = 585/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     ++             A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +KA  GL+ RL    +        Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLNFEDDASYFAHKAREGLKERL---VLVPKEKHDQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKSELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGDNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|53712001|ref|YP_097993.1| DNA polymerase III subunit alpha [Bacteroides fragilis YCH46]
 gi|52214866|dbj|BAD47459.1| DNA polymerase III alpha subunit [Bacteroides fragilis YCH46]
          Length = 1294

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/1146 (30%), Positives = 565/1146 (49%), Gaps = 134/1146 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F+  EF+          
Sbjct: 33   DFVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFAIKEFTNYVNKKNGGP 92

Query: 61   -----------KACAAG-------------------------IQPIIGCQLDIDMQDNLK 84
                        A  AG                          +PIIGC++ +       
Sbjct: 93   KGEIKDLKKRIAAIEAGEVECADKDAEIADCKAKIADAEGRLFKPIIGCEMYVA---RRT 149

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVSR +         R   + L++   EGL
Sbjct: 150  MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKG-YYMRPRTDRNELEKYH-EGL 207

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+              
Sbjct: 208  IICSACLGGEVPKKITQGLLAEAEEAIQWYKNLFGDDYYLEMQRHKATVPKANHEAYPLQ 267

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ +  + + L+ TN+  F++EE  EAHD L+ ++    +   +R   T   +
Sbjct: 268  VNVNKHLIEYSKKYNVKLICTNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMYYTKQEW 327

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    ++        
Sbjct: 328  MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 387

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L+     G +      
Sbjct: 388  KDLFDEFTQDENGNVVLSEEAAKDKIKRLGGYDKLYRIKLEADYLKKLTFDGAKKFYGDP 447

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                   + + ++RL FEL+++  M F GYFLIV DFI   +   + +GPGRGS AGS  
Sbjct: 448  L------SPEVKERLVFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAV 501

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AY L IT IDP+++ LLFERFLNPDR+S+PD DIDF  D R EV+R+V  KYG E+VA I
Sbjct: 502  AYCLQITKIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGQEKVAHI 561

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL- 503
            IT+G++  K A++DV R  ++P ++ DRL KL+P+           AI      + A   
Sbjct: 562  ITYGTMATKLAIKDVARVQKLPLAESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEAS 621

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFN 559
             DP V   ++ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+ 
Sbjct: 622  PDPLVRDTMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYE 681

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTL 618
               IE  GLIK DFLGLKTL++++++++ +   +G+++D+  I  +D  TY L +   T+
Sbjct: 682  GSVIEDTGLIKMDFLGLKTLSIIKEAVENIRLSKGMELDIDSISIEDPATYKLYSDGRTI 741

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P++
Sbjct: 742  GTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVM 801

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  K
Sbjct: 802  EKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRK 861

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N
Sbjct: 862  NGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSN 921

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS 857
            +  I K   + +   +Q + P VN   + F V  +  I + L A+KGVG    + IME  
Sbjct: 922  ITDITKLMDECKMMGVQTLGPDVNESNLKFTVNRNGNIRFGLGAVKGVGEAAVQSIMEER 981

Query: 858  A-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNI 908
              + PF  + DF  RV+    N++ +E L  AG  D F    R Q           L+ +
Sbjct: 982  KENGPFKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGETFLETL 1041

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +Y    + ++     ++F  +         +      N   R   E+ ++G Y S HPL
Sbjct: 1042 MRYGNRYQADKAAAVNSLFGGDNVIDIATPEILPAERWNDLERLNKERELVGIYLSAHPL 1101

Query: 969  DVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            D Y  +L  +      E    + + G  I +  +V S ++  ++ G+  G     + +  
Sbjct: 1102 DEYAIVLEHVCNTHMSELDDKSALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGS 1161

Query: 1027 YEANFF 1032
             E  FF
Sbjct: 1162 AEIPFF 1167


>gi|317013227|gb|ADU83835.1| DNA polymerase III subunit alpha [Helicobacter pylori Lithuania75]
          Length = 1211

 Score =  710 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1078 (34%), Positives = 585/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     N+             A++    +
Sbjct: 115  FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K   + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGHLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +KA  GL+ RL    +        Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLDFEDDASYFAHKAREGLKERL---ILVPKEKHDQYQERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK+ +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKSVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V          + +I + L A+KGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   ++I L+       ++    E E   LG + SG+PLD ++  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQIILDMTDLGEHDAKTLLECEYETLGIHVSGNPLDEFEEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|297380684|gb|ADI35571.1| DNA polymerase III, alpha subunit [Helicobacter pylori v225d]
          Length = 1211

 Score =  710 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1078 (34%), Positives = 584/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     ++             A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +    KA  GL+ RL    +        Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLSFEDDASYFAYKAREGLKERL---VLVPKEKHDQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|317010167|gb|ADU80747.1| DNA polymerase III subunit alpha [Helicobacter pylori India7]
          Length = 1211

 Score =  710 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1078 (34%), Positives = 585/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     N+             A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +    KA  GL+ RL    +        Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNERLDFEDDASYFAYKAREGLKERL---ILVPKEKHDQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V          + +I + L A+KGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F   +G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMEGGTKEQVILDMTDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|298369652|ref|ZP_06980969.1| DNA polymerase III, alpha subunit [Neisseria sp. oral taxon 014 str.
            F0314]
 gi|298282209|gb|EFI23697.1| DNA polymerase III, alpha subunit [Neisseria sp. oral taxon 014 str.
            F0314]
          Length = 1144

 Score =  710 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/1038 (37%), Positives = 585/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+P+    + I                      +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPVGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARSAALKYAAWFPDAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNIHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A    +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSLDDYLVKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P++  D+L K
Sbjct: 406  FDVDFCQSNRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSK 465

Query: 478  LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+    A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  VDVGKIPLDDQAAYKIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VQLIDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++              +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQIEIMV 1014


>gi|288800747|ref|ZP_06406204.1| DNA polymerase III, alpha subunit [Prevotella sp. oral taxon 299 str.
            F0039]
 gi|288332208|gb|EFC70689.1| DNA polymerase III, alpha subunit [Prevotella sp. oral taxon 299 str.
            F0039]
          Length = 1236

 Score =  710 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1111 (32%), Positives = 569/1111 (51%), Gaps = 92/1111 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62
             FVHL VH+ YS+L+G  ++  ++DK   +    +AITD  N+F   EF           
Sbjct: 3    DFVHLHVHTYYSILDGQSNIQKLVDKAINNGMRGLAITDHGNMFGIKEFYNYCNKVNGKR 62

Query: 63   CAAGI---QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
               G+   +PI+GC++ +          +          +++L    +GY+ LI+LVSR 
Sbjct: 63   KEEGLPPFKPILGCEMYVARNKKESKIKENGDMGGK--HLIVLAKNFQGYKNLIKLVSRS 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            + +D      R     L+    EGLI+ +   +G +         + A +    FK++FG
Sbjct: 121  W-VDGFYMRPRTDHEDLERYH-EGLIVCSACIAGEVPSKVLKGDYEGAREAARWFKRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     ++++A   ++ +V TN+  F+ ++D E
Sbjct: 179  DDYYLELQRHEVKDPSQRANRQTYPLQQKANKALLEIAKELDIKVVCTNDVHFIEKDDAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++ +  ++  +R   T   + K++ EM  +F DLPEA++NT EI  +      
Sbjct: 239  AHDHLICLSTNKDLNDPNRLLYTKQEWFKSKEEMNEVFGDLPEAMQNTCEILDKIELYSI 298

Query: 287  VHAPILPRFIEKECDDIQKE-----EENELRNKA------------VAGLEVRLAQGAIA 329
             HAPI+P +   E    +++      E +L  +               G +     G I 
Sbjct: 299  DHAPIMPFYPIPEDFGTEEDLRSSISEEDLFKEFTSDENGQNPLPLEEGKKKIEKLGGIE 358

Query: 330  KGYH------------------------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            K Y                           +  +R+ FEL+++  M F GYFLIV DFI 
Sbjct: 359  KLYRVKFEADYLGKLAYDGAKKLYGEPLTDEVDERIKFELHIMKTMGFPGYFLIVQDFIN 418

Query: 366  WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             A+    + VGPGRGS AGSV AY L IT IDP+++ LLFERFLNPDR+S+PD D DF  
Sbjct: 419  TARNELGVMVGPGRGSAAGSVVAYCLGITKIDPIKYDLLFERFLNPDRISLPDIDTDFDD 478

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D R  V+ +V+NKYGHE  A IIT+G++  K +L+DV R  ++P  Q + LCK IP+   
Sbjct: 479  DGRGLVLEWVENKYGHENCAHIITYGTMATKNSLKDVARVERVPLDQANYLCKSIPDKLP 538

Query: 485  HPVSL---QAIADDSRFREARL-ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + + +    A+A     ++A    D  V   ++ ++KLEG  R    HA G +I   P+S
Sbjct: 539  NDLKMNLTNAVASIPELKQAEESPDEKVRNTIKYAKKLEGTVRGTGVHACGFIICRDPIS 598

Query: 541  QLVPMY-----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV 594
              VP+       D    L  TQ++   IE  GLIK DFLGLKTL++L++++D +   +G+
Sbjct: 599  DWVPISIAEDKTDPGHKLRCTQYDGHVIEDTGLIKMDFLGLKTLSILKEAVDNIQFTKGI 658

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            K+DL  IP DD  TY L +   T+G FQ ES GM++ L  +QP   ED+IA+ +LYRPGP
Sbjct: 659  KIDLDNIPIDDALTYELYSAGKTIGTFQFESPGMQKHLRSLQPTVFEDLIAMNALYRPGP 718

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +  RK    KI    P ++  LK+T G+ +YQEQVM +A+ L+G++  ++D LR
Sbjct: 719  MDYIPDFIERKKDPSKIQYDIPCMEKYLKDTYGITVYQEQVMLLARQLAGFTRGQSDTLR 778

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +AMGKK+  +MDK +  F  G  KNG  + +   I+E   KFA Y FNKSHA  Y+ +S+
Sbjct: 779  KAMGKKLIAQMDKLETLFYEGGVKNGHDQKVLNKIWEDWKKFASYAFNKSHATCYSWVSF 838

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTA++K HYP E++AA ++  ++N+ ++ KF  + R   I+++ P VN     F    + 
Sbjct: 839  QTAYLKAHYPAEYMAAVLSRNLNNITEVIKFIDECRALGIKVLGPDVNESRQKFSANKDG 898

Query: 835  -IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I + L+AIKG+G   A+ I+E    + P+ ++ DF  RV+   +N++ LE L  +GALD
Sbjct: 899  IIRFGLSAIKGMGDAAAQSIVEERTKNGPYKNIYDFIERVNINAVNKKALELLALSGALD 958

Query: 893  CF-GYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
             F    R Q L         +D + +Y Q  +  +     ++F  +        T  ++ 
Sbjct: 959  GFKELKREQYLTKNIKGEPFIDLLVRYGQRYQSEQNQSQNSLFGGDDAAEIPHPTPPEWE 1018

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIRLAAMV 1001
              +       E+  +G Y S HPLD +  ++  +      E    +A     N+ L  +V
Sbjct: 1019 EWSHIELLNRERDCIGIYLSAHPLDEFSMVINNLCNANCNELADNLALASKENVALGGIV 1078

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               + + T+KG   G+VT  +         F
Sbjct: 1079 TLSEARTTKKGLPCGFVTIEDFNGSGRLALF 1109


>gi|207723766|ref|YP_002254164.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
            MolK2]
 gi|206588970|emb|CAQ35932.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
            MolK2]
          Length = 1174

 Score =  710 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1062 (38%), Positives = 607/1062 (57%), Gaps = 53/1062 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             SP FVHL++HS YS+++G + L+  +   AAD   A+A+TD  N F  + F ++A   G
Sbjct: 2    NSPRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++P++G  + I   D                 ++LLV   +GY  L  L++R +L +Q +
Sbjct: 62   VKPVVGADVWITNHDERDKP----------SRLLLLVRNKQGYLNLCTLLARAWLSNQHR 111

Query: 127  QSVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                I   W  E G E      GL+ L+G   G +  A    +  +A K    + ++F  
Sbjct: 112  GRAEIAPEWFDEPGVEDAPLATGLLALSGAMGGDVGMALANGNEALARKLATHWSRVFPQ 171

Query: 181  RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQR           Q V+LA + +LP+VAT+   F++++D+ AH+  + +A   +
Sbjct: 172  AFYIELQRAGQAGTEAYIQQAVKLAASMQLPVVATHPVQFMTQDDFTAHEARVCIAEGDL 231

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R  R + + Y K + EM ++F+D+P AL NTV+IA+RC+  L++  P LP F   
Sbjct: 232  LANPRRTRRFSTEQYFKKQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTP 291

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +   +    ++ L + A  GLE R+      A  +     +Y  RL+FE   I +M F G
Sbjct: 292  DGMSL----DDYLVHLAKDGLEKRMEVLFPDAAVREAKRPEYYARLEFETGTIIKMGFPG 347

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM
Sbjct: 348  YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD +
Sbjct: 408  PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467

Query: 476  CKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP  P   V+L+    ++    E    +  V +LLE++Q++EG+ R+   HA G++I
Sbjct: 468  AKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527

Query: 535  GDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK---SLDFLA 590
                L+   P+Y +       V+Q++   +E  GL+KFDFLGL TLT+L      +  L 
Sbjct: 528  APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLD 587

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  + S IP +D   + +L    T+ +FQLES GM+  L+  +PD  EDIIALV+LY
Sbjct: 588  PSKADWNCSHIPLNDKPAFDILKAANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  A
Sbjct: 648  RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM + +E F  GA+K+G+S   A  IF+L+ KFA YGFNKSHAAAYA
Sbjct: 708  DLLRRAMGKKKAEEMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYA 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDFK 829
            +++Y TAW+K H+P EF+AA+M+L MD+ +K+K    DA  +  ++++PP +N     F 
Sbjct: 768  LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDAAGKNGLKVLPPDINASLYRFT 827

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              D   I Y L  +KG G      I+ A  D PF  L DFC RVD +++NRR +E+LV A
Sbjct: 828  PTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVE 946
            GA D    +R QLL S+          +K       ++F    G  +++    L   +  
Sbjct: 888  GAFDSLNDNRAQLLVSIG--LAMEAAEQKAAAANQVSLFDLMSGEDAEEHRPELLDEAPW 945

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------------TIRG 992
            ++  + + E++ LGFY SGH  D  +  +R+       +                     
Sbjct: 946  STKRKLQEEKQALGFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNGNGGGYGNRDA 1005

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE--YEANFF 1032
             N  ++ ++V  + + T++G  +  V   + ++    E   F
Sbjct: 1006 RNKTVSGVIVGLRTQMTQRGK-MIVVMLDDGSQSEATEVTVF 1046


>gi|301161727|emb|CBW21267.1| putative DNA polymerase III alpha subunit [Bacteroides fragilis 638R]
          Length = 1294

 Score =  710 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/1146 (30%), Positives = 565/1146 (49%), Gaps = 134/1146 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F+  EF+          
Sbjct: 33   DFVHLHVHTQYSLLDGQASVSALVDKAMKDGMKGIAVTDHGNMFAIKEFTNYVNKKNGGP 92

Query: 61   -----------KACAAG-------------------------IQPIIGCQLDIDMQDNLK 84
                        A  AG                          +PIIGC++ +       
Sbjct: 93   KGEIKDLKKRIAAIEAGEVECADKDAEIADCKAKIADAEGRLFKPIIGCEMYVA---RRT 149

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVSR +         R   + L++   EGL
Sbjct: 150  MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKG-YYMRPRTDRNELEKYH-EGL 207

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+              
Sbjct: 208  IICSACLGGEVPKKITQGLLAEAEEAIQWYKNLFGDDYYLEMQRHKATVPKANHEAYPLQ 267

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ +  + + L+ TN+  F++EE  EAHD L+ ++    +   +R   T   +
Sbjct: 268  VNVNKHLIEYSKKYNVKLICTNDVHFVNEEHAEAHDRLICLSTGKDLDDPNRMYYTKQEW 327

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K ++EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    ++        
Sbjct: 328  MKTKAEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRQKYTE 387

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L+     G +      
Sbjct: 388  KDLFDEFTQDENGNVVLSEEAAKDKIKRLGGYDKLYRIKLEADYLKKLTFDGAKKFYGDP 447

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                   + + ++RL FEL+++  M F GYFLIV DFI   +   + +GPGRGS AGS  
Sbjct: 448  L------SPEVKERLVFELHIMKTMGFPGYFLIVQDFIAAGRNMGVSIGPGRGSAAGSAV 501

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AY L IT IDP+++ LLFERFLNPDR+S+PD DIDF  D R EV+R+V  KYG E+VA I
Sbjct: 502  AYCLQITKIDPIKYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGQEKVAHI 561

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL- 503
            IT+G++  K A++DV R  ++P ++ DRL KL+P+           AI      + A   
Sbjct: 562  ITYGTMATKLAIKDVARVQKLPLAESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEAS 621

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFN 559
             DP V   ++ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+ 
Sbjct: 622  PDPLVRDTMKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYE 681

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTL 618
               IE  GLIK DFLGLKTL++++++++ +   +G+++D+  I  +D  TY L +   T+
Sbjct: 682  GSVIEDTGLIKMDFLGLKTLSIIKEAVENIRLSKGMELDIDSISIEDPATYKLYSDGRTI 741

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P++
Sbjct: 742  GTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVM 801

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  K
Sbjct: 802  EKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRK 861

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N
Sbjct: 862  NGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPAEYMAAVMSRSLSN 921

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS 857
            +  I K   + +   +Q + P VN   + F V  +  I + L A+KGVG    + IME  
Sbjct: 922  ITDITKLMDECKMMGVQTLGPDVNESNLKFTVNRNGNIRFGLGAVKGVGEAAVQSIMEER 981

Query: 858  A-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNI 908
              + PF  + DF  RV+    N++ +E L  AG  D F    R Q           L+ +
Sbjct: 982  KENGPFKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGETFLETL 1041

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +Y    + ++     ++F  +         +      N   R   E+ ++G Y S HPL
Sbjct: 1042 MRYGNRYQADKAAAVNSLFGGDNVIDIATPEILPAERWNDLERLNKERELVGIYLSAHPL 1101

Query: 969  DVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            D Y  +L  +      E    + + G  I +  +V S ++  ++ G+  G     + +  
Sbjct: 1102 DEYAIVLEHVCNTHMSELDDKSALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSGS 1161

Query: 1027 YEANFF 1032
             E  FF
Sbjct: 1162 AEIPFF 1167


>gi|253572097|ref|ZP_04849501.1| DNA polymerase III alpha subunit [Bacteroides sp. 1_1_6]
 gi|251838277|gb|EES66364.1| DNA polymerase III alpha subunit [Bacteroides sp. 1_1_6]
          Length = 1267

 Score =  710 bits (1831), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1142 (31%), Positives = 565/1142 (49%), Gaps = 124/1142 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC A I        +PIIGC++ +       
Sbjct: 63   KGEIKDLKKRIAGIEAGTVECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVS  +         R   S L+    EGL
Sbjct: 120  MDLKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELERYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+              
Sbjct: 178  IVCSACLGGEVPKRITAGQFDEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  + + A  + + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKYLQEYARKYNIKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK-------- 305
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    ++        
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKYTE 357

Query: 306  ------------------EEENELRNKAVAGLEV---------------RLAQGAIAKGY 332
                              EEE + + K + G E                      I    
Sbjct: 358  KDLFDEFTQDENGNVVLSEEEGQAKIKRLGGYEKLYRIKLEGDYLAKLAFDGAKRIYGDP 417

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
             +++ ++RL+FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS  AY L 
Sbjct: 418  LSEEVKERLNFELYIMKTMGFPGYFLIVQDFINAARSELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRL KL+P+           AI      + A  + DP V
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIE 564
               L+ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+    IE
Sbjct: 598  RDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R +++D+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRSLEIDVDQIDITDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKP 861
            K   + +   IQ + P VN   + F V  D  I + L A+KGVG    + I+E    + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVQSIVEERNTNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              ++++     ++F            + +         R   E+ ++G Y S HPLD + 
Sbjct: 1018 RYQEDKRAAINSLFGGANVVDIATPEIPQGVERWGDLERLNKERDLVGIYLSAHPLDEFA 1077

Query: 973  PILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +      +    A + G  I +  +V S ++  ++ G+  G     + +   E  
Sbjct: 1078 IVLDHVCNTRMADLEDKAALAGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137

Query: 1031 FF 1032
            F+
Sbjct: 1138 FW 1139


>gi|154687056|ref|YP_001422217.1| DNA polymerase III DnaE [Bacillus amyloliquefaciens FZB42]
 gi|154352907|gb|ABS74986.1| DnaE [Bacillus amyloliquefaciens FZB42]
          Length = 1115

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1026 (36%), Positives = 592/1026 (57%), Gaps = 38/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQVHS YSLL  A S+  ++ +       ++A+TD N ++ A+EF +   + GI+P
Sbjct: 5    SFVHLQVHSGYSLLNSAASVKELVTQAKELGYSSLALTDENVMYGAIEFYKACKSNGIKP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    I   D     +           ++LL  T  GYQ L+++ S +  + +G    
Sbjct: 65   IIGLTASIYTDDTELEAHP----------LILLAETNTGYQNLVKISSALQSMAKGGMK- 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
                 W++    EGLI +T G +G I+        + A +    F++LFGD R Y+  Q 
Sbjct: 114  ---RKWMKSYH-EGLIAITPGENGYIESLLQTGKFEEAVRAAEGFRELFGDGRFYLGYQP 169

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +G++   E  +++L+   E+ + A  +  ++ +ED +A+  L A+        +     
Sbjct: 170  FKGHETLSEE-ILRLSAETEIAVCAAGDVRYIKKEDQDAYRCLCAIKAGEKWEDQSGNLP 228

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                YL+   EM  +++  PEA+E    IAR+C   + +    LP F   +     K  +
Sbjct: 229  DL--YLRAPEEMAELYTRHPEAIEAAARIARQCRVDVSLGQTQLPSFPAPDG----KSAD 282

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L      GL        +  G   +   +RL++EL+VI RMKFS YFLIV DF+++A 
Sbjct: 283  DYLAEICHEGLR-------LRFGTPDERAVRRLEYELDVIRRMKFSDYFLIVWDFMKYAH 335

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ AY+L ITD+DPL+ SLLFERFLNP+R+SMPD DIDF   RRD
Sbjct: 336  EKGIVTGPGRGSAAGSLVAYSLFITDVDPLKHSLLFERFLNPERISMPDIDIDFPDTRRD 395

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YVQNKYG   VAQIITFG+L AKAALRD GR   +   + D+L +LIP+ P   + 
Sbjct: 396  EVIQYVQNKYGAMHVAQIITFGTLAAKAALRDTGRVFGISPKEADQLARLIPSKPGMTLE 455

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                   ++          + ++ +I++K+EGL RH STHAAG+V+   PLS++VP+  +
Sbjct: 456  EAR-RQSAQLNRRLSESAVLHKVFQIARKIEGLPRHTSTHAAGVVLSKEPLSEVVPLQ-E 513

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHE 607
                + +TQ+ M  +E  GL+K DFLGL+ LTL++        +   K+D S I + D +
Sbjct: 514  GHDGVYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESIKTMIEKETNTKIDFSEISYQDEK 573

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL+   T GIFQLESSGMR  L+ ++P  +EDI+A+ +LYRPGP++NI ++ +RK+G
Sbjct: 574  TFSLLSNGDTTGIFQLESSGMRNVLKRLKPSRLEDIVAVNALYRPGPMENIPLFIDRKHG 633

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            + ++   H  +  +L +T GVI+YQEQ+M IA  ++G+SL EAD+LRRA+ KK K+ +D+
Sbjct: 634  RARVEVPHEDVRNILSDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKQKDILDR 693

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ G  K   S   A  +++L+ KFA+YGFN+SHA AY++I YQ A++K HYP+ F
Sbjct: 694  ERSHFVEGCLKKEYSVVTANEVYDLIVKFANYGFNRSHAVAYSMIGYQLAYLKAHYPLYF 753

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +   +T  + N +KI ++  +A+   IQ++PPS+N     F   +  + YSL A+K VG 
Sbjct: 754  MCGLLTSVIGNEDKISQYLHEAKGSGIQVLPPSINKSGFPFAPENGAVRYSLRAVKNVGV 813

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            +  + I +A   KPF+ L DFC RV +K +NR+ +E+L+F+GA+D F  +R  LL S+D 
Sbjct: 814  SAVKDIYKARTHKPFEDLFDFCFRVPAKSVNRKTIEALIFSGAMDEFNQNRAALLASVDV 873

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              ++A+    +  +    +F   + +FS K    +        +   E+  LG YFS HP
Sbjct: 874  ALEHAELFRAD--DDQMGLF--LEESFSIKPKYVEAEEFPLVDKLRFEKEALGVYFSSHP 929

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L  ++ +L+K G +    +    +G  + + A++   +  +T+ G  + ++T S+   E 
Sbjct: 930  LSAFRDLLKKRGAQAITAARQMPKGQ-LSIGALLAGIKTIRTKTGQHMAFLTLSDETGEM 988

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 989  EAVVFP 994


>gi|308064219|gb|ADO06106.1| DNA polymerase III subunit alpha [Helicobacter pylori Sat464]
          Length = 1211

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1078 (34%), Positives = 582/1078 (53%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++                    A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTYNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +    KA  GL+ RL    +        Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLNFEDDASYFAYKAREGLKERL---FLVPKEKHDQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSVAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQVILDMTDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|281358509|ref|ZP_06244989.1| DNA polymerase III, alpha subunit [Victivallis vadensis ATCC BAA-548]
 gi|281314991|gb|EFA99024.1| DNA polymerase III, alpha subunit [Victivallis vadensis ATCC BAA-548]
          Length = 1187

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1039 (35%), Positives = 573/1039 (55%), Gaps = 19/1039 (1%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL +H+ YS+L+GA ++  +L      +  A+AITD   +    EF Q    
Sbjct: 1    MPS--DFVHLHLHTHYSMLDGACTVKGLLQLAQEHEMNAMAITDHGYMGGVEEFHQVLSG 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI PIIG +  +   D ++  +  K        ++LL    +GY  L +++S     D 
Sbjct: 59   AGINPIIGVEAYVAPGD-MRDFDSNKPFNRGGFHLILLCENEDGYSSLCKMMSAAN-KDG 116

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 RI    +++   +GLI  +    G I + +     + AE+ L  +  +FG D  +
Sbjct: 117  FHYKPRIDKELMRQYH-KGLICTSACIGGEISQYYLQGDVKRAEQALGEYLDIFGRDNFF 175

Query: 184  VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L  H   +  +    +V+LA  ++L L+ATN+  ++ +ED EAH++++ +     +++
Sbjct: 176  IELMDHGMEEERKCNKFLVELAKKNDLRLIATNDVHYMRKEDAEAHEIMLCIQTGARLAE 235

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA--PILPRFIEKEC 300
            K      P+ Y K+ +EM  +F +LPE++ NT  IA RCS            P+F   + 
Sbjct: 236  KHFRFPAPEFYFKSEAEMKELFRELPESITNTRLIAERCSMKFHYVPEVNHYPKFYMPDG 295

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                + +  E+    +        +         +   +R+++EL VI +  F  YF +V
Sbjct: 296  RLADRNDLREVCYDNMEYRYGFDPRKTPELDDRQKKILERMEYELGVIEKTGFISYFFVV 355

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+ AK  +IPVGPGRGSGAGS+ AY   ITDIDPLRF+L FERFLNP+R+S PDFD+
Sbjct: 356  SDFIRHAKGQDIPVGPGRGSGAGSLVAYLTRITDIDPLRFNLFFERFLNPERVSPPDFDV 415

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC+ RR EVI YV+ +YG + VAQI T+G L+AKA ++DV R L   +   +RL K+IP
Sbjct: 416  DFCERRRGEVIDYVRGRYGFDSVAQICTYGQLKAKAVVKDVARVLGCDFEFGNRLSKMIP 475

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   +  +A+  +    E    DP + ++ + ++ LEGL R    HAAG++IGD+ L 
Sbjct: 476  EDPKMTLD-KAVEQNKELAEKIETDPMIAKVWKFAKVLEGLNRQTGIHAAGVIIGDQRLD 534

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
             LVP+ R   SD  V  F     E+ GL+K DFLGLKTLT+++ +LD + +   + +D  
Sbjct: 535  NLVPLAR-SASDSMVVPFPAHPCEEQGLLKMDFLGLKTLTIIKDALDMIKKDYGIVIDTM 593

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD +T+ +L    T+ +FQLES GM+        + +E IIAL+++YRPGP+  I 
Sbjct: 594  KIPLDDPKTFEMLQRGDTVAVFQLESGGMQNLCRSFGVETLEHIIALLAIYRPGPMQFIP 653

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RK G+EKI+  HPL++  LKET G+++YQEQ+MQ+ Q+L+G++L  AD+LRRA+GK
Sbjct: 654  DFIRRKKGEEKIIYDHPLMEDCLKETYGIMLYQEQIMQVVQVLAGFTLGGADILRRAIGK 713

Query: 720  KIKEEMDKQKERFISGASKNGI-SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K  + + KQKE+F  G  +     + +A  I+E +  FA YGFNKSH+AAY  + YQTA+
Sbjct: 714  KKVDVLAKQKEKFFKGCKETNNIDEKLADQIWEKIKLFAGYGFNKSHSAAYGFVCYQTAY 773

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YPV+F+AA +  E+++ E+I       ++  I ++PP VN+  + F   +  I + 
Sbjct: 774  LKANYPVQFMAAILNGEIESAERIAFMINTCKEMGINVLPPDVNSSDIRFSTDNGNIRFG 833

Query: 839  LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L AIKGVG   A  I+E+   D  F++  DFC R     +N R+LE L  AGALD  G  
Sbjct: 834  LGAIKGVGEVAASQIIESRQKDGKFETFLDFCERCG-SNVNSRMLEHLTRAGALDGLGLR 892

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK---ITLEKFSVENSSVRFEN 954
            R Q+L   + +  +A    ++R     ++F    G  +D    + +      +     ++
Sbjct: 893  RSQILAIAEPMMAFAAGRARDRAAGQGSLFDLLDGGDADDACSVPIPDIPEFDKEDILKS 952

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GS 1013
            E+ +LGFY +GHPLD Y  ++R                  IR+A MV +  QK ++  G 
Sbjct: 953  EKELLGFYVTGHPLDPYAELVRTYSTVPIRSLEELNDNAQIRIAGMVNTFTQKLSKNSGK 1012

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            + G +   +     E   +
Sbjct: 1013 QFGILLLEDLDASCECMIY 1031


>gi|260592651|ref|ZP_05858109.1| DNA polymerase III, alpha subunit [Prevotella veroralis F0319]
 gi|260535421|gb|EEX18038.1| DNA polymerase III, alpha subunit [Prevotella veroralis F0319]
          Length = 1239

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1114 (31%), Positives = 545/1114 (48%), Gaps = 95/1114 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62
             ++HL VH++YS+L+G   +  ++DK  AD    +AITD   +F   EFS          
Sbjct: 3    DYIHLHVHTNYSILDGQSKVTRLVDKAIADGMKGMAITDHGVMFGIKEFSDYCAKVNKER 62

Query: 63   CAAG---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
               G    +PI GC++ +  +              +   +++L     GY+ LI+LVS  
Sbjct: 63   KKNGEEPFKPIFGCEMYVARRTMHDKDKS--MHDNSGYHLIVLAKNYNGYKNLIKLVSHA 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            + +D      R   + L++   E LI+ +   +G I           A +    + ++FG
Sbjct: 121  W-VDGYYYRPRTDRAELEKYH-EDLIVCSACIAGEIPSKIIHGDIDGAREACEWYHRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     ++Q A  + + +V TN+  F  +E  E
Sbjct: 179  DDFYLELQRHEVKDPTILANREAFPLQQKANKVLLQFAKEYGIKVVCTNDCHFEDKETAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ +A +  +    R R +   + K+R EM  +FSD+PEAL NT+E+  +      
Sbjct: 239  AHDHLLCLATNEDLDDPKRMRYSKQEWFKSRQEMNDVFSDIPEALTNTLEVLDKVEIYSI 298

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNK-----------------AVAGLEVRLAQGAIA 329
             H PI+P F   E    ++E E +   +                    G +V    G   
Sbjct: 299  DHGPIMPFFPIPESFGTEEEWEKKFTEEDLYKEFTTDENGENPLSPEEGQKVIERLGGYE 358

Query: 330  KGYH------------------------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            K Y                         + + +  + FEL+V+  M F GYFLIV DFI 
Sbjct: 359  KIYRIKFEADYLAKLAYDGAKKLYGDPLSDEVKSHIRFELHVMKTMGFPGYFLIVQDFIN 418

Query: 366  WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             A++   + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD D DF  
Sbjct: 419  AARQELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDIDTDFDD 478

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D R  V+++V +KYGHE  A IIT+G++  K +++DV R  ++P +  + LCK IP+   
Sbjct: 479  DGRGRVLQWVMDKYGHENCAHIITYGTMATKNSIKDVARVEKLPIAIANELCKAIPDRLP 538

Query: 485  HPVSLQ---AIADDSRFREARLADPSV-DRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              + +    AI    + ++A +++       ++ ++ LEG  R+   HA G +I   P+ 
Sbjct: 539  DGMKMNLANAIKCTPQLQDAEVSEDIRERNTIKYARMLEGTVRNTGIHACGFIICRNPID 598

Query: 541  QLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594
              VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ L+++   + Q    
Sbjct: 599  DWVPVSTATDPDFPEKKVPVTQYDGHVIEATGLIKMDFLGLKTLSELKEACKVIRQTTGD 658

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +DL  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +LYRPGP
Sbjct: 659  IIDLDNIPIDDELTYQLYQKGQTIGTFQFESAGMQKYLRELHPTVFEDLIAMNALYRPGP 718

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +  RKN    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  E+D LR
Sbjct: 719  MDYIPDFIKRKNDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLASFTRGESDALR 778

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +AMGKK K  +D+ K +FI     NG    I   I+    KFA Y FNKSHA  Y+ ++Y
Sbjct: 779  KAMGKKKKAIVDQMKPKFIKQGQANGHDPQILEKIWSDWEKFASYAFNKSHATCYSWVAY 838

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833
            QTA++K HYP E++AA MT     + +I K  ++ +   I  + P +N   + F V    
Sbjct: 839  QTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKALKIATLGPDINESQIGFGVNKKG 898

Query: 834  RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I + LAAIKG+GT+ A  I+ E   + P+  + DF  RVD   +NR+  ESL ++G  D
Sbjct: 899  EIRFGLAAIKGMGTSAAESIVSEREKNGPYKDIYDFAERVDLSNVNRKAFESLAYSGGFD 958

Query: 893  CFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
             FG  R Q           LD I +Y Q  +  +  +  ++F              K   
Sbjct: 959  SFGLQREQFFGVSGRDSVFLDIIVRYGQLFQTEKAEQQNSLFGGMDAVAVMHPVAPKTEK 1018

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------EESVATIRGNNIRLAA 999
              +  +   E+ ++G Y S HPLD Y  +L  M            +     + + +    
Sbjct: 1019 WPTIEKLNKERELVGVYLSAHPLDEYSVVLNNMCNTHCSMIGRNADMTKLSQTDEVTFGG 1078

Query: 1000 MVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFF 1032
            +V S  ++ + + G   G+VT  +     E   F
Sbjct: 1079 IVTSVNERFSQKTGKPFGFVTIEDFEGTGELALF 1112


>gi|29347640|ref|NP_811143.1| DNA polymerase III subunit alpha [Bacteroides thetaiotaomicron
            VPI-5482]
 gi|29339541|gb|AAO77337.1| DNA polymerase III alpha subunit [Bacteroides thetaiotaomicron
            VPI-5482]
          Length = 1267

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1142 (31%), Positives = 566/1142 (49%), Gaps = 124/1142 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC A I        +PIIGC++ +       
Sbjct: 63   KGEIKDLKKRIAGIEAGTVECEDKEAEVAACKAKIVEAENKLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVS  +         R   S L++   EGL
Sbjct: 120  MDLKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+              
Sbjct: 178  IVCSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  + + A  + + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKYLQEYARKYNIKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK-------- 305
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    ++        
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKYTE 357

Query: 306  ------------------EEENELRNKAVAGLEV---------------RLAQGAIAKGY 332
                              EEE + + K + G E                      I    
Sbjct: 358  KDLFDEFTQDENGNVVLSEEEGQAKIKRLGGYEKLYRIKLEGDYLAKLAFDGAKRIYGDP 417

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
             +++ ++RL+FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS  AY L 
Sbjct: 418  LSEEVKERLNFELYIMKTMGFPGYFLIVQDFINAARSELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRL KL+P+           AI      + A  + DP V
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIE 564
               L+ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+    IE
Sbjct: 598  RDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R +++D+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRSLEIDVDQIDITDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKP 861
            K   + +   IQ + P VN   + F V  D  I + L A+KGVG    + I+E    + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVQSIVEERNTNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              ++++     ++F            + +         R   E+ ++G Y S HPLD + 
Sbjct: 1018 RYQEDKRAAINSLFGGANVVDIATPEIPQGVERWGDLERLNKERDLVGIYLSAHPLDEFA 1077

Query: 973  PILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +      +    A + G  I +  +V S ++  ++ G+  G     + +   E  
Sbjct: 1078 IVLDHVCNTRMADLEDKAALAGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137

Query: 1031 FF 1032
            F+
Sbjct: 1138 FW 1139


>gi|171057667|ref|YP_001790016.1| DNA polymerase III subunit alpha [Leptothrix cholodnii SP-6]
 gi|170775112|gb|ACB33251.1| DNA polymerase III, alpha subunit [Leptothrix cholodnii SP-6]
          Length = 1188

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1061 (37%), Positives = 592/1061 (55%), Gaps = 51/1061 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL+ H+ YS+++G L ++ I+   A D QPA+AITD  NLF A++F ++A   G++P
Sbjct: 2    SFVHLRTHTEYSVVDGTLRIDEIVKTAAKDGQPALAITDLANLFGAIKFYKEANKRGVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  + ++ +                  ++LLV    GY  L E++SR ++ +  +   
Sbjct: 62   IIGADIWLEPEGI-----GAAGEVRPATRLLLLVQNEPGYLNLCEILSRAWVQNVQRNQA 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +   WL E+   GLI L+GG  G + ++     +  A +       +F  R Y+ +QR 
Sbjct: 117  WVKWEWLDEL-NGGLIALSGGLMGCVGQSLAQGDTVRAAELARKLAAIFPRRFYLEVQRA 175

Query: 190  R--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
               G+D    +  V LA   +LP+VAT+   +L+ +D++AH+  + VA    ++   RPR
Sbjct: 176  GLPGHDALVLAT-VPLAAQLQLPVVATHPIQYLAPDDFDAHEARVCVAEGETIANPKRPR 234

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                D + K ++EM ++F+D+P AL NT+EIARRCS  L +  P LP F      D    
Sbjct: 235  RFGRDQHFKTQAEMEALFADVPTALANTLEIARRCSLRLVLGKPQLPNFPTPTLADGSSM 294

Query: 307  E-ENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              E+  R  +  GLE RL         +      Y +RL+FEL  I +M F GYFLIV+D
Sbjct: 295  PMEDYFRQLSYEGLEERLALLYPKPEKRDAERARYLERLEFELTTILKMGFPGYFLIVSD 354

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+WAK N  PVGPGRGSGAGS+ AY L+ITD+DPL ++LLFERFLNP+R+SMPDFDIDF
Sbjct: 355  FIRWAKANGCPVGPGRGSGAGSLVAYVLSITDLDPLHYNLLFERFLNPERVSMPDFDIDF 414

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD VI YV+++YG   V+QI TFG++ AKAALRD+GR L M Y  VD + KLIP  
Sbjct: 415  CQGNRDRVIDYVKDRYGRPAVSQIATFGTMAAKAALRDIGRVLGMGYGHVDSIAKLIPAP 474

Query: 483  PAHPVSLQAIADDSRFRE---------------ARLADPSVDRLLEISQKLEGLYRHAST 527
            P   V+L  + + +  R+                   +  V  LL ++ ++EG+ R+   
Sbjct: 475  PGKSVTLARVPEKAEDRDGGVIYARLEAPELEEREKNEEEVAELLSLAMRVEGMVRNIGM 534

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QK 584
            HA G++I    ++   P+Y+   SD  V+Q++   +E  GL+KFDFLGL TLT+L   ++
Sbjct: 535  HAGGVLIAPGKITDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILELAKE 594

Query: 585  SLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
             +    +         IP DD   Y L +   T  +FQ ES GM++ L+  +P  +ED+I
Sbjct: 595  FIVARHENRKDFAFETIPLDDAAVYKLFSDGLTEAVFQFESGGMQRMLKDAKPSRLEDLI 654

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            AL +LYRPGP+D I  +  RK+GKE +   HP+++ +L ET G+++YQEQVMQ AQ+L G
Sbjct: 655  ALNALYRPGPMDLIPSFVARKHGKEPVEYPHPMVEWVLSETYGIMVYQEQVMQTAQVLGG 714

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            YSL  AD+LRRAMGKK  EEM + +  F  GA+ N IS+  A  IF+L+ KFA YGFNKS
Sbjct: 715  YSLGGADMLRRAMGKKKAEEMAEHRAIFRKGAAGNNISQDKADEIFDLMEKFAGYGFNKS 774

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAAAY++++Y TAW+K H+  EF AA+MT+E+D+ +K++   QDA +F +Q   P VN  
Sbjct: 775  HAAAYSLLAYHTAWIKVHHTAEFFAANMTIELDDTDKLRVLRQDALKFGVQFESPDVNVG 834

Query: 825  CVDFKVGDNR-----IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
               F+    +     I Y L AIKG G      I+ A     PF S+ DFC+RVD K +N
Sbjct: 835  VYRFEPAPGKAGNKLIRYGLGAIKGTGQGAIEAIIAARNEGGPFRSIFDFCARVDRKSIN 894

Query: 879  RRVLESLVFAGALDCFGYS----RMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHE 930
            +RV+E+LV AGA D         R +LL S+    +YA    +        +F      +
Sbjct: 895  KRVIEALVKAGAFDKLHPKGLDGRAELLASVGLALEYA--GTQAAHADQSGLFDFGGGDD 952

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
             G+ + +         +   R  +E+  +G++ SGH  D     +R+   +  E+   + 
Sbjct: 953  HGSSTREPDYVAAETWDVKQRLSHEKIAIGYFLSGHLFDQVAAEVRQFAKRRIEDLSDSR 1012

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                  LA +V   +     +G  +      +     EA  
Sbjct: 1013 DPQ--TLAGIVTDLRIVNGHRGK-VAIFKLDDKTAAIEAVV 1050


>gi|298383490|ref|ZP_06993051.1| DNA polymerase III, alpha subunit [Bacteroides sp. 1_1_14]
 gi|298263094|gb|EFI05957.1| DNA polymerase III, alpha subunit [Bacteroides sp. 1_1_14]
          Length = 1267

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1142 (31%), Positives = 566/1142 (49%), Gaps = 124/1142 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC A I        +PIIGC++ +       
Sbjct: 63   KGEIKDLKKRIAGIEAGTVECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVS  +         R   S L++   EGL
Sbjct: 120  MDLKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+              
Sbjct: 178  IVCSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  + + A  + + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKYLQEYARKYNIKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK-------- 305
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    ++        
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKYTE 357

Query: 306  ------------------EEENELRNKAVAGLEV---------------RLAQGAIAKGY 332
                              EEE + + K + G E                      I    
Sbjct: 358  KDLFDEFTQDENGNVVLSEEEGQAKIKRLGGYEKLYRIKLEGDYLAKLAFDGAKRIYGDP 417

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
             +++ ++RL+FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS  AY L 
Sbjct: 418  LSEEVKERLNFELYIMKTMGFPGYFLIVQDFINAARSELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRL KL+P+           AI      + A  + DP V
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIE 564
               L+ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+    IE
Sbjct: 598  RDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R +++D+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRSLEIDVDQIDITDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKP 861
            K   + +   IQ + P VN   + F V  D  I + L A+KGVG    + I+E    + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVQSIVEERNTNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FKGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              ++++     ++F            + +         R   E+ ++G Y S HPLD + 
Sbjct: 1018 RYQEDKRAAINSLFGGANVVDIATPEIPQGVERWGDLERLNKERDLVGIYLSAHPLDEFA 1077

Query: 973  PILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +      +    A + G  I +  +V S ++  ++ G+  G     + +   E  
Sbjct: 1078 IVLDHVCNTRMADLEDKAALAGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137

Query: 1031 FF 1032
            F+
Sbjct: 1138 FW 1139


>gi|83746496|ref|ZP_00943547.1| DNA polymerase III alpha subunit [Ralstonia solanacearum UW551]
 gi|207743808|ref|YP_002260200.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
            IPO1609]
 gi|83726827|gb|EAP73954.1| DNA polymerase III alpha subunit [Ralstonia solanacearum UW551]
 gi|206595208|emb|CAQ62135.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
            IPO1609]
          Length = 1176

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1064 (38%), Positives = 607/1064 (57%), Gaps = 55/1064 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             SP FVHL++HS YS+++G + L+  +   AAD   A+A+TD  N F  + F ++A   G
Sbjct: 2    NSPRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++P++G  + I   D                 ++LLV   +GY  L  L++R +L +Q +
Sbjct: 62   VKPVVGADVWITNHDERDKP----------SRLLLLVRNKQGYLNLCTLLARAWLSNQHR 111

Query: 127  QSVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                I   W  E G E      GL+ L+G   G +  A    +  +A K    + ++F  
Sbjct: 112  GRAEIAPEWFDEPGVEDAPLSTGLLALSGAMGGDVGMALANGNEALARKLATHWSRVFPQ 171

Query: 181  RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQR           Q V+LA + +LP+VAT+   F++++D+ AH+  + +A   +
Sbjct: 172  AFYIELQRAGQAGTEAYIQQAVKLAASMQLPVVATHPVQFMTQDDFTAHEARVCIAEGDL 231

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R  R + + Y K + EM ++F+D+P AL NTV+IA+RC+  L++  P LP F   
Sbjct: 232  LANPRRTRRFSTEQYFKKQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTP 291

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +   +    ++ L + A  GLE R+      A  +     +Y  RL+FE   I +M F G
Sbjct: 292  DGMSL----DDYLVHLAKDGLEKRMEVLFPDAAVREAKRPEYYARLEFETGTIIKMGFPG 347

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM
Sbjct: 348  YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD +
Sbjct: 408  PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467

Query: 476  CKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP  P   V+L+    ++    E    +  V +LLE++Q++EG+ R+   HA G++I
Sbjct: 468  AKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527

Query: 535  GDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK---SLDFLA 590
                L+   P+Y +       V+Q++   +E  GL+KFDFLGL TLT+L      +  L 
Sbjct: 528  APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLD 587

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  + S IP +D   + +L    T+ +FQLES GM+  L+  +PD  EDIIALV+LY
Sbjct: 588  PSKADWNCSHIPLNDKPAFDILKAANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  A
Sbjct: 648  RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM + +E F  GA+K+G+S   A  IF+L+ KFA YGFNKSHAAAYA
Sbjct: 708  DLLRRAMGKKKAEEMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYA 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDFK 829
            +++Y TAW+K H+P EF+AA+M+L MD+ +K+K    DA  +  ++++PP +N     F 
Sbjct: 768  LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDAAGKNGLKVLPPDINASLYRFT 827

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              D   I Y L  +KG G      I+ A  D PF  L DFC RVD +++NRR +E+LV A
Sbjct: 828  PTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVE 946
            GA D    +R QLL S+          +K       ++F    G  +++    L   +  
Sbjct: 888  GAFDSLNDNRAQLLVSIG--LAMEAAEQKAAAANQVSLFDLMSGEDAEEHRPELLDEAPW 945

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA----------------TI 990
            ++  + + E++ LGFY SGH  D  +  +R+       +                     
Sbjct: 946  STKRKLQEEKQALGFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNGNGNGGGYGNR 1005

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE--YEANFF 1032
               N  ++ ++V  + + T++G  +  V   + ++    E   F
Sbjct: 1006 DARNKTVSGVIVGLRTQMTQRGK-MIVVMLDDGSQSEATEVTVF 1048


>gi|217033909|ref|ZP_03439333.1| hypothetical protein HP9810_870g41 [Helicobacter pylori 98-10]
 gi|216943672|gb|EEC23117.1| hypothetical protein HP9810_870g41 [Helicobacter pylori 98-10]
          Length = 1211

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1078 (34%), Positives = 584/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     ++             A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIRMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +    KA  GL+ RL    +        Y++RL+
Sbjct: 294  NPPTPPSFKFTKTYAQNEGLSFEDDASYFAYKAREGLKERL---VLVPKEKHDQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPITYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K++F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQAIGGFSLGEADLIRRAMGKKDAQIMADNKDKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E     
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGEPEKKIVFGLGAIKGVGGEPIKNIIEERTKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|119962046|ref|YP_947481.1| DNA polymerase III subunit alpha [Arthrobacter aurescens TC1]
 gi|119948905|gb|ABM07816.1| DNA polymerase III, alpha subunit [Arthrobacter aurescens TC1]
          Length = 1186

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1071 (34%), Positives = 549/1071 (51%), Gaps = 55/1071 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              + SFVHL  H+ YS+L+GA  L  + D+      PA+A TD   LF A +F +KA   
Sbjct: 4    SSNDSFVHLHTHTEYSMLDGAARLGELFDETERLGMPALATTDHGYLFGAFDFWRKATDK 63

Query: 66   GIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            GI+PIIG +  +               +        +   +   + LL     G + L  
Sbjct: 64   GIKPIIGVEAYVTPGTARGDKERVRWGDESQRKDDVSGGGSYTHMTLLSYNNVGMRNLFR 123

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
              S   L     +  R+    L    +EGLI  TG  SG +         + A +    F
Sbjct: 124  ASSIASLDSVFGKWPRLDRELLNTY-SEGLIATTGCPSGEVQTKLRLGQYREAVEAAAEF 182

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG +  +  L  H    +R     +++LA    LPLVATN+  +  E D +AH+ L+
Sbjct: 183  RDIFGAENYFCELMDHGLDIERRVTGDLLRLAKELNLPLVATNDLHYTHEHDAKAHEALL 242

Query: 233  AVAHSTVVSQKDRP-------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            A+   + + +                +YLK+  EM  +F D PEA +NT+ IA RC    
Sbjct: 243  AIQSGSTLLEPTYDNGGSRFAFSGSGYYLKSPQEMRELFRDHPEACDNTLLIAERCEVSF 302

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
               A  +PRF     +D    E + L  +   GL+ R  QG           R++ D+EL
Sbjct: 303  NTGANYMPRFPCPPGED----ETSWLVKEVDTGLKYRYPQG------IPDKVRKQADYEL 352

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             VI  M F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPL+  L+FE
Sbjct: 353  GVITSMGFPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLDPLQHGLIFE 412

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNPDR+SMPDFD+DF   RR EVI YV  KYG ERVA I+T+G+++ K AL+D  R L
Sbjct: 413  RFLNPDRVSMPDFDVDFDDRRRSEVIDYVTKKYGDERVAMIVTYGTIKTKQALKDSSRVL 472

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR---------FREARLADPSVDRLLEISQ 516
              P+S  ++L K +P          A   +           FR+    DP   ++ E + 
Sbjct: 473  GYPFSMGEQLTKALPPAVMAKDIPLADIQNPESKRYSEAGDFRQLIATDPEAAKVFETAL 532

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             +EGL R    HAAG+++   P+  ++P+ R  +    +TQF+    E  GLIK DFLGL
Sbjct: 533  GIEGLKRQWGVHAAGVIMSSDPIIDVIPIMRRFQDGQVITQFDYPTSEGLGLIKMDFLGL 592

Query: 577  KTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            + LT++  +L+ +   RGV +DL  +  DD  +Y LL    TLG+FQL+   MR  L+ M
Sbjct: 593  RNLTIISDALENIKMNRGVDLDLENLELDDAASYELLARGDTLGVFQLDGGPMRSLLKLM 652

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVI 689
            +PD  EDI A+++LYRPGP+  +    Y  RKNG ++++ IHP ++  LKE    T G+I
Sbjct: 653  KPDNFEDISAVLALYRPGPMGANAHTDYALRKNGIQEVIPIHPELEEPLKEILGGTFGLI 712

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVM +AQ L+GYSL +AD+LRRAMGKK K E+DKQ   F  G   NG S      +
Sbjct: 713  VYQEQVMAVAQKLAGYSLGQADILRRAMGKKKKSELDKQFAGFSQGMQDNGYSMAAVKTL 772

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +++L  F+DY FNK+H+AAY VISY TA++K HY  E++AA +T   D+ +K   +  + 
Sbjct: 773  WDILLPFSDYAFNKAHSAAYGVISYWTAYLKAHYAPEYMAALLTSVGDDKDKSAIYLNEC 832

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDF 868
            R+  I ++PP VN   ++F      I + + AI+ VG      ++ A   +  + S +DF
Sbjct: 833  RRMGITVLPPDVNESSLNFTPVGTDIRFGMGAIRNVGVNVVDAMVAARKSEGKYTSFKDF 892

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              +V +   N+R +ESL+ AGA D  G+ R  L    +        +++N      ++FA
Sbjct: 893  LLKVPAVVCNKRTIESLIKAGAFDSLGHHRRALAMIHEEAIDSVITLKRNEAIGQFDLFA 952

Query: 929  HEKGTFSDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
              +    +      +          +   E+ +LG Y S HPL   + +L +   +    
Sbjct: 953  GFEDQEPEASLTTEIPDLPEWEKKDKLSFERDMLGLYVSDHPLQGLEGVLSQHAEQSITS 1012

Query: 986  SVAT---IRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +A      G  + +A M+ S  ++     G+        +     E  FF
Sbjct: 1013 IIAEDGPHDGAIVTIAGMITSLSRRIAKASGNAYARAEIEDLGASMEVMFF 1063


>gi|308062724|gb|ADO04612.1| DNA polymerase III subunit alpha [Helicobacter pylori Cuz20]
          Length = 1211

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1078 (34%), Positives = 584/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     ++             A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +    KA  GL+ RL    +        Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLSFEDDASYFAYKAREGLKERL---VLVPKEKHDQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            IYQEQVMQI Q + G+SL E+D++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  IYQEQVMQIVQTIGGFSLGESDLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQVILDMVDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|169629781|ref|YP_001703430.1| DNA polymerase III subunit alpha [Mycobacterium abscessus ATCC 19977]
 gi|169241748|emb|CAM62776.1| DNA polymerase III alpha subunit [Mycobacterium abscessus]
          Length = 1185

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/1068 (29%), Positives = 503/1068 (47%), Gaps = 44/1068 (4%)

Query: 5    LEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +  S  SFVHL  H+ YS+L+GA  +  +L ++      A+ +TD  N++ A EF   A 
Sbjct: 1    MSSSNSSFVHLHNHTEYSMLDGAAKIKPMLAEVERLGMSAVGMTDHGNMYGASEFYNVAA 60

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLI 113
            A G++PIIG +  I                       +   +   + ++   A G + L 
Sbjct: 61   ATGVKPIIGIEAYIAPASRFDTKRVFWGDPGQKSDDVSGSGSYTHMTMVAENATGLRNLF 120

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +L S      Q  +  R+    + E  + G+I  TG  SG +           A      
Sbjct: 121  KLSSLASFEGQLGKWARMDADLIAEHAS-GIIATTGCPSGEVQTRLRLGQESEALAAAAK 179

Query: 174  FKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            ++ +FG D  ++ L  H    +R     ++++     +P +ATN+  +++++    H+ L
Sbjct: 180  WQDIFGKDNFFLELMDHGLSIERRVREGLLEVGKKLGIPPLATNDCHYVTKDHAHNHEAL 239

Query: 232  MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
            + V     +S   R +   D Y    +  +    D          +              
Sbjct: 240  LCVQTGKTLSDPTRFKFDGDGYYLKPASEMRDLWDDAVPGACDNTLLIAERVQSYEDVWN 299

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
                +        +++++ LR +   GLE R        G    +Y  R  +EL+VI + 
Sbjct: 300  FKDRMPIFPVPEGEDQDSWLRKEVDRGLERRFEGVP---GGVPDEYFTRAHYELDVIKQK 356

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F  YFL+V D +  AK+  I VGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+
Sbjct: 357  GFPAYFLVVGDLVSHAKEVGIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPE 416

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R S PD DIDF   RR E++RY   K+G +RVAQ+ITFG+++ KAAL+D  R        
Sbjct: 417  RPSAPDIDIDFDDRRRGEMVRYATEKWGSDRVAQVITFGTIKTKAALKDSARIHYGQPGF 476

Query: 472  VDR-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
                          + K IP         +   + +  R     DP V  + + +  LEG
Sbjct: 477  AIADRITKALPPPIMAKDIPVWGITNPEHERYKEAAEVRTLIDTDPDVRNIYQTALGLEG 536

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R+A  HA  +++   PL+  +P+++  +    +T ++    E  GL+K DFLGL+ LT
Sbjct: 537  LIRNAGVHACAVIMSSEPLTDAIPLWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLT 596

Query: 581  LLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  +LD +   RG+ +DL  +P DD  TY LL+   TLG+FQL+   MR  L  MQP  
Sbjct: 597  VIGDALDNIKANRGIDLDLDHLPLDDPATYELLSRGDTLGVFQLDGGPMRDLLRRMQPTG 656

Query: 640  IEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQE 693
              DI+A+++LYRPGP+       Y +RKNG++ I  IHP ++  LK+    T G+I+YQE
Sbjct: 657  FNDIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLKDILAETFGLIVYQE 716

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            Q+M IAQ ++ YS+ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++ +
Sbjct: 717  QIMFIAQKVASYSMGKADALRKAMGKKKLEVLEAEYKGFYEGMTNNGFSEKAVKALWDTI 776

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNKSHAA Y ++S+ TA++K +YP E++A  +T   D+ +K   +  D R+  
Sbjct: 777  LPFAGYAFNKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRRLG 836

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRV 872
            I ++PP VN    +F      I Y L  ++ VG    + ++    +   F    D+  ++
Sbjct: 837  ITVLPPDVNESVHNFASVGEDIRYGLGGVRNVGANVVQSLIATREEKGAFTDFSDYLHKI 896

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D    N++V ESLV AGA D  G+ R  L     +        +K       ++F     
Sbjct: 897  DIAACNKKVTESLVKAGAFDSLGHPRKGLFLVQSDAVDSVLGTKKAEAMGQFDLFGGGGE 956

Query: 933  TFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                      I +          +   E+ +LG Y SGHPL+    +L +         +
Sbjct: 957  DSVPASDIFAIKVPD-DEWEEKHKLALEREMLGLYVSGHPLNGVAHLLSRQTDTQIPAIL 1015

Query: 988  --ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                     +++  ++ S  ++  + G         +     E  FFP
Sbjct: 1016 DGEVANDAVVKVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVLFFP 1063


>gi|317178164|dbj|BAJ55953.1| DNA polymerase III subunit alpha [Helicobacter pylori F16]
          Length = 1211

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1078 (34%), Positives = 583/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     ++             A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +    KA  GL+ RL    +        Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLSFEDDASYFAYKAREGLKERL---VLVPKEKHDQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIGVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E     
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGEPEKKIVFGLGAIKGVGGEPIKNIIEERTKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|291296502|ref|YP_003507900.1| DNA polymerase III subunit alpha [Meiothermus ruber DSM 1279]
 gi|290471461|gb|ADD28880.1| DNA polymerase III, alpha subunit [Meiothermus ruber DSM 1279]
          Length = 1257

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/1096 (36%), Positives = 579/1096 (52%), Gaps = 87/1096 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIA-----ADQQPAIAITDTNNLFSALEFSQKACAA 65
            F HL  H+ +SLL+GA  L ++L  +          P +A+TD  N+F A++F + A   
Sbjct: 22   FAHLHQHTQFSLLDGAARLKDLLKWVKQVSPEE---PMLAMTDHGNMFGAVQFYKYATEL 78

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G++PIIG +  +  +       QGK        + LL    EGYQ L  L SR YL +  
Sbjct: 79   GVKPIIGYEAYVAAESRFDR-KQGKGLDGGYFHLTLLAQNMEGYQNLSRLASRAYL-EGF 136

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184
                RI    L+E    G+I L+G     I +       + AEKRL  +  +FG +R ++
Sbjct: 137  YGKPRIDREILRE-HNAGIIALSGCLGAEIPQFILQERFEDAEKRLQEYLAIFGPERYFI 195

Query: 185  NLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +Q H   ++++ ++V+ + A  + L LVATN+  ++ ++D EAH VL+AV         
Sbjct: 196  EIQNHGLAEQHKVNRVLKEFADKYGLGLVATNDGHYVKKDDAEAHAVLLAVQSKATWDDP 255

Query: 244  DRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRC------SFILQVHAPILPRFI 296
            +R +   D  Y+K+  EM   F D      + ++              +++    +   I
Sbjct: 256  NRWKFPCDEFYVKSPQEMRQTFEDERNLWGSRMDELFDNSVNIGRMCEVELVPKKVQYRI 315

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLA-------------------------------- 324
             K      + E    R     GL  R                                  
Sbjct: 316  PKYPLPEGRTEVVYFRELTFNGLLKRYPDRVTPELYREFLRKLGRPVPHGDGEVLALELA 375

Query: 325  --QGAIAKGYHAQDYRQ-----------RLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
              +   A   H  + R+           R  +EL V+ RM F GY LIV+DFI WAK N 
Sbjct: 376  RIEDLEATRAHLPELREGIQWDGWAILSRAIYELTVVERMGFPGYLLIVSDFINWAKNNG 435

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I VGPGRGS AGS+  YA  IT+IDPL ++LLFERFLNP R+SMPD D DF   RR EVI
Sbjct: 436  ISVGPGRGSAAGSLVTYATRITNIDPLEYNLLFERFLNPARVSMPDIDTDFSDVRRGEVI 495

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQ 490
             YV+ +YG E VAQI TFG+L +KAA++D  R   +P  + D L KLIP     P+   +
Sbjct: 496  EYVRQRYGDEMVAQIGTFGTLASKAAIKDAARVFGLPVKKADELAKLIPVTFGKPMPLDK 555

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            AI      R     DP V R+LE++QKLEGL R +S HAAG+VI D PL   +P+ R   
Sbjct: 556  AIETIPDLRAEMEKDPLVKRVLEVAQKLEGLSRQSSVHAAGVVISDVPLRDYIPLMRAGD 615

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
            +   VTQ++M  +E  G +K DFLGL+TL+ L +    + + +GV++D   +P DD +T+
Sbjct: 616  TGAKVTQYDMGSVEALGFLKMDFLGLRTLSFLDECKRIIKESKGVELDYDNLPIDDAKTF 675

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQL+S+GM  A+ G++P  I+DIIAL +LYRPGP++NI  Y  R +G+E
Sbjct: 676  ELLGRGETKGVFQLDSAGMTSAVRGLKPRRIQDIIALGALYRPGPMENIPTYIRRHHGRE 735

Query: 670  KIVSIH-----PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++           I P+L+ET G+ +YQEQ+MQIA  ++GYSL EAD+LRRAMGKK  EE
Sbjct: 736  EVSYPQFPNAEKFIRPILEETYGIPVYQEQIMQIATAVAGYSLGEADLLRRAMGKKKMEE 795

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQ+ +F  GA+KNGI    A  +F+LL  FA+YGFNKSHAAAYA+++YQTA++K H+P
Sbjct: 796  MVKQRAQFKEGAAKNGIPAEEADRLFDLLEAFANYGFNKSHAAAYAILTYQTAYVKAHFP 855

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEF AA +T+E  + +K+ ++ + AR   ++++PP +N     F+  +  + + L+A+K 
Sbjct: 856  VEFFAAVLTVERHDSDKVAEYIRAARTAGVEVLPPDINQSGFSFRALEKSVLFGLSAVKN 915

Query: 845  VGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG T    I+       P+ SL DF  R+D    N+RV+ESL+ AGA D FG  R  +L 
Sbjct: 916  VGETPTELILRERERGGPYKSLPDFLRRLDGTVANKRVVESLIKAGAFDAFGP-RGPMLA 974

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
            +LD++ K+AQ   +   +    +F         +  +      ++  +   E+  LG Y 
Sbjct: 975  ALDDLLKWAQAEREQAQSGMMGLFGESL-----EPVIPAVPQLDAITQLRMEKEALGIYV 1029

Query: 964  SGHPLDVYKPILRKMGIKGY-------EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            +GHPL  Y+  LR+              E         + LA MV    +K T+ G  + 
Sbjct: 1030 TGHPLSRYQG-LREAASCTIEELPQAFAELKGNRNRARLLLAGMVEGIVRKPTKSGGMLV 1088

Query: 1017 WVTFSEPAKEYEANFF 1032
              T ++     E   F
Sbjct: 1089 RFTLADETGAVEVVAF 1104


>gi|300690877|ref|YP_003751872.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum PSI07]
 gi|299077937|emb|CBJ50577.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum PSI07]
          Length = 1174

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1062 (38%), Positives = 603/1062 (56%), Gaps = 53/1062 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             SP FVHL++HS YS+++G + L+  +   AAD   A+A+TD  N F  + F ++A   G
Sbjct: 2    NSPRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++P++G  + I   D                 ++LLV   +GY  L  L++R +L +Q +
Sbjct: 62   VKPVVGADVWITNHDERDKPG----------RLLLLVRNKQGYLNLCMLLARAWLSNQHR 111

Query: 127  QSVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                I   W  E G E      GL+ L+G   G I  A    +  +A K    +  +F +
Sbjct: 112  GRAEIAPEWFGEPGVEDAPLATGLLALSGAMGGDIGMALANGNEALARKLAAQWSSVFPE 171

Query: 181  RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQR           + V+LA +  LP+VAT+   F++ +D+ AH+  + +A   +
Sbjct: 172  AFYIELQRAGQAGTEAYVQRAVKLAASMHLPVVATHPVQFMTPDDFTAHEARVCIAEGDL 231

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R  R T D Y K + EM ++F+D+P AL N V+IA+RC+  L++  P LP F   
Sbjct: 232  LANPRRARRFTTDQYFKTQDEMCALFADIPSALANAVQIAQRCNLTLELGKPKLPLFPTP 291

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +   +    ++ L + A  GLE R+         +     +Y  RL+FE   I +M F G
Sbjct: 292  DGMSL----DDYLAHLAKQGLEQRMEVLFPDPAVREAKRPEYYARLEFETGTIIKMGFPG 347

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM
Sbjct: 348  YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD +
Sbjct: 408  PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467

Query: 476  CKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP  P   V+L+    ++    E    +  V +LLE++Q++EG+ R+   HA G++I
Sbjct: 468  AKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527

Query: 535  GDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK---SLDFLA 590
                L+   P+Y +       V+Q++   +E  GL+KFDFLGL TLT+L      +  L 
Sbjct: 528  APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLD 587

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  + S IP  D   + +L T  T+ +FQLES GM+  L+  +PD  EDIIALV+LY
Sbjct: 588  PSRADWNCSHIPLTDKAAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  A
Sbjct: 648  RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM + +  F +GA+K+G++   A  IF+L+ KFA YGFNKSHAAAYA
Sbjct: 708  DLLRRAMGKKKAEEMAEHRALFRAGAAKDGLTTEKADEIFDLMEKFAGYGFNKSHAAAYA 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDFK 829
            +++Y TAW+K H+P EF+AA+M+L MD+ +K+K    DA  +  ++++PP +N     F 
Sbjct: 768  LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDAEGKNGLKVLPPDINASQYRFT 827

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              D   + Y L  +KG G      I+ A  D PF  L DFC RVD +++NRR +E+LV A
Sbjct: 828  PTDAKTLRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVE 946
            GA D    +R QLL S+          +K       ++F    G  +++    L   +  
Sbjct: 888  GAFDSLNDNRAQLLVSIG--LAMEAAEQKAAAANQVSLFDLMSGDDAEEHRPELLDEAPW 945

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--------------TIRG 992
             +  + + E++ LGFY SGH  D  +  +R+       +                 +   
Sbjct: 946  TTKRKLQEEKQALGFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNGNGGGYGSRDA 1005

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE--YEANFF 1032
             N  +A ++V  + + T++G  +  V   + ++    E   F
Sbjct: 1006 RNKTVAGVIVGLRTQMTQRGK-MIVVMLDDGSQSEATEVTVF 1046


>gi|160885119|ref|ZP_02066122.1| hypothetical protein BACOVA_03117 [Bacteroides ovatus ATCC 8483]
 gi|156109469|gb|EDO11214.1| hypothetical protein BACOVA_03117 [Bacteroides ovatus ATCC 8483]
          Length = 1268

 Score =  708 bits (1828), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1142 (31%), Positives = 565/1142 (49%), Gaps = 124/1142 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC A I        +PIIGC++ +       
Sbjct: 63   KGEVKDLKKRIAGIEAGTIECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L     GY  LI+LVS  +         R   S L++   EGL
Sbjct: 120  MDLKEGKPDQSGYHLIVLAKNETGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +         AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 178  IICSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLELQRHKATVPRANHECYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ A    + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKHLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK--------------- 298
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P F                  
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357

Query: 299  -----------ECDDIQKEEENELRNKAVAGLEV---------------RLAQGAIAKGY 332
                         + +  EE+ + + K + G +                      I    
Sbjct: 358  KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
              ++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS  AY L 
Sbjct: 418  LTEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRLCKL+P+           AIA     + A  + DP +
Sbjct: 538  MATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEASSDPLL 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIE 564
               ++ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R V+VD+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDISDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPIMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKP 861
            K   + +   IQ + P VN   + F V  D  I + L A+KGVG    + IM E   + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGDIRFGLGAVKGVGEAAVQSIMEERRKNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              + ++     ++F  E         + +     +   R   E+ ++G Y S HPLD + 
Sbjct: 1018 RYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077

Query: 973  PILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +      +        G  I +  +V S ++  ++ G+  G     + +   E  
Sbjct: 1078 IVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137

Query: 1031 FF 1032
            F+
Sbjct: 1138 FW 1139


>gi|328554543|gb|AEB25035.1| DNA polymerase III DnaE [Bacillus amyloliquefaciens TA208]
 gi|328912947|gb|AEB64543.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens LL3]
          Length = 1112

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1026 (36%), Positives = 591/1026 (57%), Gaps = 38/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQV S YSLL  A S+  I+ +       ++A+TD N ++ A+EF +   + GI+P
Sbjct: 2    SFVHLQVRSGYSLLNSAASVKEIVTQAKELGYSSLALTDENVMYGAIEFYKACKSHGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    I   +                 +VLL  T  GYQ L+++ S +  + +G    
Sbjct: 62   IIGLTASIYTDETELEARP----------LVLLAETNTGYQNLLKISSALQSIAKGGMK- 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
                 W++    EGLI +T G +G I+        + A +    F++LFG+ R Y+  Q 
Sbjct: 111  ---RKWMKSYH-EGLIAITPGENGYIESLLQAGEFEEAVRVAEGFRELFGEGRFYLGYQP 166

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +G++   E  +++L+   E+ + A  +  ++ +ED +A+  L A+        +     
Sbjct: 167  FKGHETLSEE-ILRLSAETEIAVCAAGDVRYIKKEDQDAYRCLCAIKAGEKWEDQSGDLP 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                YL+   EM +I+   PEA++    +A++C   + +    LP F   +     K  +
Sbjct: 226  DL--YLRPPEEMENIYMKNPEAVKAAARVAQQCQVDVSLGQTQLPSFPAPDG----KSAD 279

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L      GL        +  G   +   +RL++EL+VI RMKFS YFLIV DF+++A 
Sbjct: 280  DYLAEVCHEGLR-------LRFGTPDERAVRRLEYELDVIRRMKFSDYFLIVWDFMKYAH 332

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ AY+L ITD+DPL+ SLLFERFLNP+R+SMPD DIDF   RRD
Sbjct: 333  EKGIVTGPGRGSAAGSLVAYSLFITDVDPLKHSLLFERFLNPERISMPDIDIDFPDTRRD 392

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YVQNKYG   VAQIITFG+L AKAALRD GR   +   + D+L +LIP+ P   + 
Sbjct: 393  EVIQYVQNKYGSMHVAQIITFGTLAAKAALRDTGRVFGISPKEADQLARLIPSKPGMTLE 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                   ++          + ++ +I++K+EGL RH STHAAG+V+   PLS++VP+  +
Sbjct: 453  EAR-RQSAQLNRRLSESAVLHKVFQIARKIEGLPRHTSTHAAGVVLSKEPLSEVVPLQ-E 510

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHE 607
                + +TQ+ M  +E  GL+K DFLGL+ LTL++        +   K+D S I + D +
Sbjct: 511  GHDGVYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESIKTMIEKETNTKIDFSEISYQDEK 570

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL+   T GIFQLESSGMR  L+ ++P  +EDI+A+ +LYRPGP++NI ++ +RK+G
Sbjct: 571  TFSLLSNGDTTGIFQLESSGMRNVLKRLKPSRLEDIVAVNALYRPGPMENIPLFIDRKHG 630

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            + ++   H  +  +L +T GVI+YQEQ+M IA  ++G+SL EAD+LRRA+ KK K+ +D+
Sbjct: 631  RARVEVPHEDVRNILSDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKQKDILDR 690

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ G  K   S   A  +++L+ KFA+YGFN+SHA AY++I YQ A++K HYP+ F
Sbjct: 691  ERSHFVEGCLKKEYSVVTANEVYDLIVKFANYGFNRSHAVAYSMIGYQLAYLKAHYPLYF 750

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +   +T  + N +KI ++  +A+   +Q++PPSVN     F   +  + YSL AIK VG 
Sbjct: 751  MCGLLTSVIGNEDKISQYLHEAKGSGLQVLPPSVNKSGFPFAPENGAVRYSLRAIKNVGV 810

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            +  + I +A   KPF+ L DFC RV +K +NR+ +E+L+F+GA+D F  +R  LL S+D 
Sbjct: 811  SAVKDIYKARTHKPFEDLFDFCFRVPAKSVNRKTIEALIFSGAMDEFNQNRAALLASVDV 870

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              ++A+    +  +    +F   + +FS K    +        +   E+  LG YFS HP
Sbjct: 871  ALEHAELFRAD--DDQMGLF--LEESFSIKPKYVEAEEFPLVDKLRFEKEALGVYFSSHP 926

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L  ++ +L+K G +    ++   +G  + + A++   +  +T+ G  + ++T S+   E 
Sbjct: 927  LSAFRNLLKKRGAQAIATALQMPKGQ-LSIGALLAGIKTIRTKTGQHMAFLTLSDETGEM 985

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 986  EAVVFP 991


>gi|15608685|ref|NP_216063.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis H37Rv]
 gi|15841014|ref|NP_336051.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis CDC1551]
 gi|31792733|ref|NP_855226.1| DNA polymerase III subunit alpha [Mycobacterium bovis AF2122/97]
 gi|121637469|ref|YP_977692.1| DNA polymerase III subunit alpha [Mycobacterium bovis BCG str.
            Pasteur 1173P2]
 gi|148661343|ref|YP_001282866.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis H37Ra]
 gi|148822771|ref|YP_001287525.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis F11]
 gi|167968102|ref|ZP_02550379.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis H37Ra]
 gi|215411208|ref|ZP_03420016.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis
            94_M4241A]
 gi|215426890|ref|ZP_03424809.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis T92]
 gi|215430440|ref|ZP_03428359.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis EAS054]
 gi|215445744|ref|ZP_03432496.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis T85]
 gi|218753267|ref|ZP_03532063.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis GM 1503]
 gi|219557457|ref|ZP_03536533.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis T17]
 gi|224989943|ref|YP_002644630.1| DNA polymerase III subunit alpha [Mycobacterium bovis BCG str. Tokyo
            172]
 gi|253799398|ref|YP_003032399.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            KZN 1435]
 gi|254231775|ref|ZP_04925102.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis C]
 gi|254364418|ref|ZP_04980464.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis str. Haarlem]
 gi|254550566|ref|ZP_05141013.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis '98-R604
            INH-RIF-EM']
 gi|260186497|ref|ZP_05763971.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis CPHL_A]
 gi|260200607|ref|ZP_05768098.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis T46]
 gi|260204831|ref|ZP_05772322.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis K85]
 gi|289443001|ref|ZP_06432745.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            T46]
 gi|289447158|ref|ZP_06436902.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            CPHL_A]
 gi|289554661|ref|ZP_06443871.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            KZN 605]
 gi|289569583|ref|ZP_06449810.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            T17]
 gi|289574231|ref|ZP_06454458.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            K85]
 gi|289750114|ref|ZP_06509492.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            T92]
 gi|289753634|ref|ZP_06513012.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis EAS054]
 gi|289757663|ref|ZP_06517041.1| DNA polymerase III subunit alpha DnaE1 [Mycobacterium tuberculosis
            T85]
 gi|289761710|ref|ZP_06521088.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis GM 1503]
 gi|294996513|ref|ZP_06802204.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 210]
 gi|297634115|ref|ZP_06951895.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis KZN
            4207]
 gi|297731102|ref|ZP_06960220.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis KZN
            R506]
 gi|298525059|ref|ZP_07012468.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis
            94_M4241A]
 gi|306775736|ref|ZP_07414073.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu001]
 gi|306779560|ref|ZP_07417897.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu002]
 gi|306784291|ref|ZP_07422613.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu003]
 gi|306788659|ref|ZP_07426981.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu004]
 gi|306792998|ref|ZP_07431300.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu005]
 gi|306797377|ref|ZP_07435679.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu006]
 gi|306803258|ref|ZP_07439926.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu008]
 gi|306807837|ref|ZP_07444505.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu007]
 gi|306967657|ref|ZP_07480318.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu009]
 gi|307079560|ref|ZP_07488730.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu011]
 gi|307084125|ref|ZP_07493238.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu012]
 gi|313658434|ref|ZP_07815314.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis KZN
            V2475]
 gi|54036990|sp|P63978|DPO3A_MYCBO RecName: Full=DNA polymerase III subunit alpha
 gi|54040951|sp|P63977|DPO3A_MYCTU RecName: Full=DNA polymerase III subunit alpha
 gi|1403495|emb|CAA98315.1| PROBABLE DNA POLYMERASE III (ALPHA CHAIN) DNAE1 (DNA
            NUCLEOTIDYLTRANSFERASE) [Mycobacterium tuberculosis
            H37Rv]
 gi|13881224|gb|AAK45865.1| DNA polymerase III, alpha subunit [Mycobacterium tuberculosis
            CDC1551]
 gi|31618323|emb|CAD96241.1| Probable DNA polymerase III (alpha chain) dnaE1 [Mycobacterium bovis
            AF2122/97]
 gi|121493116|emb|CAL71587.1| Probable DNA polymerase III (alpha chain) dnaE1 [Mycobacterium bovis
            BCG str. Pasteur 1173P2]
 gi|124600834|gb|EAY59844.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis C]
 gi|134149932|gb|EBA41977.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis str. Haarlem]
 gi|148505495|gb|ABQ73304.1| DNA polymerase III subunit alpha DnaE1 [Mycobacterium tuberculosis
            H37Ra]
 gi|148721298|gb|ABR05923.1| DNA polymerase III alpha subunit dnaE1 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis F11]
 gi|224773056|dbj|BAH25862.1| DNA polymerase III subunit alpha [Mycobacterium bovis BCG str. Tokyo
            172]
 gi|253320901|gb|ACT25504.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            KZN 1435]
 gi|289415920|gb|EFD13160.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            T46]
 gi|289420116|gb|EFD17317.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            CPHL_A]
 gi|289439293|gb|EFD21786.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            KZN 605]
 gi|289538662|gb|EFD43240.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            K85]
 gi|289543337|gb|EFD46985.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            T17]
 gi|289690701|gb|EFD58130.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            T92]
 gi|289694221|gb|EFD61650.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis EAS054]
 gi|289709216|gb|EFD73232.1| DNA polymerase III (alpha chain) dnaE1 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis GM 1503]
 gi|289713227|gb|EFD77239.1| DNA polymerase III subunit alpha DnaE1 [Mycobacterium tuberculosis
            T85]
 gi|298494853|gb|EFI30147.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis
            94_M4241A]
 gi|308215828|gb|EFO75227.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu001]
 gi|308327494|gb|EFP16345.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu002]
 gi|308330956|gb|EFP19807.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu003]
 gi|308334777|gb|EFP23628.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu004]
 gi|308338566|gb|EFP27417.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu005]
 gi|308342267|gb|EFP31118.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu006]
 gi|308345762|gb|EFP34613.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu007]
 gi|308350062|gb|EFP38913.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu008]
 gi|308354716|gb|EFP43567.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu009]
 gi|308362582|gb|EFP51433.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu011]
 gi|308366247|gb|EFP55098.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            SUMu012]
 gi|323719995|gb|EGB29107.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            CDC1551A]
 gi|326903177|gb|EGE50110.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            W-148]
 gi|328459148|gb|AEB04571.1| DNA polymerase subunit III alpha dnaE1 [Mycobacterium tuberculosis
            KZN 4207]
          Length = 1184

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/1069 (30%), Positives = 526/1069 (49%), Gaps = 47/1069 (4%)

Query: 5    LEKSP---SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            +  S    SFVHL  H+ YS+L+GA  +  +L ++     PA+ +TD  N+F A EF   
Sbjct: 1    MSGSSAGSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNS 60

Query: 62   ACAAGIQPIIGCQLDIDMQDNLK----------MTNQGKTPFPTVPSIVLLVSTAEGYQR 111
            A  AGI+PIIG +  I                       +   +   + ++   A G + 
Sbjct: 61   ATKAGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRN 120

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L +L S      Q  +  R+    + E   EG+I+ TG  SG +         + A +  
Sbjct: 121  LFKLSSHASFEGQLSKWSRMDAELIAE-HAEGIIITTGCPSGEVQTRLRLGQDREALEAA 179

Query: 172  LTFKKLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
              ++++ G D  ++ L  H    +R     ++++     +P +ATN+  +++ +    H+
Sbjct: 180  AKWREIVGPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHE 239

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             L+ V     +S  +R +   D Y    +  +    D          +            
Sbjct: 240  ALLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADV 299

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                  +         ++ + LR++  AGL  R   G          YR+R  +E++VI 
Sbjct: 300  WTPRDRMPVFPVPDGHDQASWLRHEVDAGLRRRFPAG------PPDGYRERAAYEIDVIC 353

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
               F  YFLIVAD I +A+   I VGPGRGS AGS+ AYAL ITDIDP+   LLFERFLN
Sbjct: 354  SKGFPSYFLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLN 413

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QM 467
            P+R SMPD DIDF   RR E++RY  +K+GH+RVAQ+ITFG+++ KAAL+D  R    Q 
Sbjct: 414  PERTSMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQP 473

Query: 468  PYSQVDRLCKL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKL 518
             ++  DR+ K   P   A  +        S +   + +  R     DP V  + + ++ L
Sbjct: 474  GFAIADRITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGL 533

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+ 
Sbjct: 534  EGLIRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRN 593

Query: 579  LTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  ++D +   RG+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQP
Sbjct: 594  LTIIGDAIDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQP 653

Query: 638  DCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIY 691
               ED++A+++LYRPGP+       Y +RKN ++ I  IHP ++      L ET G+I+Y
Sbjct: 654  TGFEDVVAVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVY 713

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQ+M+IAQ ++ YSL+ AD+LR+AMGKK +E ++K+ E F  G   NG S      +++
Sbjct: 714  QEQIMRIAQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWD 773

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  FADY FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+
Sbjct: 774  TILPFADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRK 833

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
              I ++PP VN   ++F      I Y L A++ VG      +++   D   F    D+ +
Sbjct: 834  LGITVLPPDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLN 893

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-H 929
            ++D    N++V ESL+ AGA D  G++R  L     +        +K       ++F  +
Sbjct: 894  KIDISACNKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSN 953

Query: 930  EKGTFSDKITL---EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            + GT +                  +   E+ +LG Y SGHPL+    +L           
Sbjct: 954  DDGTGTADPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAI 1013

Query: 987  V--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +         +R+  ++ S  ++  + G         +     E  FFP
Sbjct: 1014 LDGDVPNDAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1062


>gi|317508659|ref|ZP_07966315.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974]
 gi|316253062|gb|EFV12476.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974]
          Length = 1180

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/1067 (30%), Positives = 535/1067 (50%), Gaps = 51/1067 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL  H+ YS+L+G   +N + ++ A    PA+ +TD  N++ A EF + A   G+
Sbjct: 2    ADSFVHLHNHTEYSMLDGHAQVNAMFEEAARLGMPAVGMTDHGNMWGAAEFYRAAKKYGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQ----------GKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +PIIG +  +          +            +       + ++   A+G   L++L S
Sbjct: 62   KPIIGIEAYLAPSSRFSTKREFWGQPSQRSDDVSGSGAYTHMTMVAKDAQGLHNLMKLSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +  Q  +  R+    L E G  G+I  TG  SG +         + A +    F+++
Sbjct: 122  LASIEGQLGKWPRMDAEILAEHGR-GIIATTGCPSGEVQTKLRLGQFEEACEAAGRFQEI 180

Query: 178  FG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG +  Y+ L  H    +R     +++L    ++P +ATN+  ++ +E    H++L+ V 
Sbjct: 181  FGKENFYLELMDHGIDIERRVREDLLRLGERLKIPPLATNDCHYVKQEHARGHEILLCVQ 240

Query: 236  HSTVVSQKDRPRVTPDHYLKNRS--EMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
                +S   R +   D Y    +     +  S +P A +NT+ +A +     +V      
Sbjct: 241  TGKTMSDPGRFKFDGDGYYLKSAELMRAAWDSQVPGACDNTLRVAEQVGSYDEVWEKRDR 300

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
              +    D   +++ + L  +   GLE R   G       A++YR R  FEL+VI +  F
Sbjct: 301  MPVFPVPDG--EDQNSWLAKEVDRGLERRFPDGV------AEEYRARAAFELDVIKQKGF 352

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFL+V D I +A+   I VGPGRGS AGS+ +YAL IT++DP+   LLFERFLNP+R 
Sbjct: 353  PSYFLVVGDLIAYARSVGIRVGPGRGSAAGSLVSYALGITNLDPIEHGLLFERFLNPERP 412

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            S PD DIDF   RR E+IRY   K+G +RVAQ+ITFG+++ KAA++D  R L        
Sbjct: 413  SAPDIDIDFDDRRRGEMIRYASEKWGADRVAQVITFGTIKTKAAIKDSARVLHGQPGFSI 472

Query: 474  R-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
                        + K IP         +   + +  RE   +DP V ++ E +  LEGL 
Sbjct: 473  ADRITKALPPAIMAKDIPLSGITDPEHERYKEAAEIRELIASDPDVAKIYETALSLEGLI 532

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R+A  HA  I++ + PL   +P+++  +    +T ++    E  GL+K DFLGL+ LT++
Sbjct: 533  RNAGVHACAIIMSNEPLIDTIPLWKRAQDGAIITGWDYPSCEDIGLLKMDFLGLRNLTVI 592

Query: 583  QKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              +++ + Q RG+++DL  +P  D  T+ LL+   TLG+FQL+   MR  L  M+P    
Sbjct: 593  GDAIENIRQNRGIELDLETVPLTDPATFALLSRGETLGVFQLDGGPMRDLLRRMRPTGFG 652

Query: 642  DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQV 695
            DI+A++SLYRPGP+  +    Y +RKNG+++I  IHP ++  LK    ET G+I+YQEQ+
Sbjct: 653  DIVAVLSLYRPGPMGVNAHNDYADRKNGRQQIKPIHPELEEPLKEILAETYGLIVYQEQI 712

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M IAQ ++ YS+ +AD LR+AMGKK  E +  + E F +G   NG S+     +++ +  
Sbjct: 713  MFIAQKVASYSMGKADALRKAMGKKKLEVLQAEYEGFAAGMLGNGFSEAAIKALWDTVLP 772

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FADY FNKSHAA Y +++Y TA++K +YP E++AA +T   D+ +K   +  D R+  I 
Sbjct: 773  FADYAFNKSHAACYGLVAYWTAYLKANYPAEYMAALLTSVGDDKDKAAVYLADCRKMGIT 832

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874
            ++ P VN   VDF      I + L+A++ VG      I+    A+  F S  D+ ++ D 
Sbjct: 833  VLAPDVNKSRVDFAAVGEDILFGLSAVRNVGVGLVESIIRTREAEGAFTSFSDYLAKADI 892

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
               N++ +ESL+ AG  D  G+ R  L              +K       ++F+    + 
Sbjct: 893  AACNKKAVESLIKAGGFDALGHPRKGLYLVHAEAVDAVMGTKKAEAQGQYDLFSDFFESG 952

Query: 935  SDKIT------LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV- 987
            S ++       +      +   +   E+ +LG Y SGHPL   +  L           + 
Sbjct: 953  SPELASTFETQIPD-EEWDMKQKLALEREMLGLYVSGHPLAGLEQALAAATDVSIRSILD 1011

Query: 988  -ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G ++++  ++    ++  + G+        +     E   FP
Sbjct: 1012 GEVKDGTSVKVGGVLSGVNRRVNKNGAPYASAQLEDLVGGIEVFLFP 1058


>gi|308174617|ref|YP_003921322.1| DNA polymerase III subunit alpha [Bacillus amyloliquefaciens DSM 7]
 gi|307607481|emb|CBI43852.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens DSM 7]
          Length = 1115

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1026 (36%), Positives = 591/1026 (57%), Gaps = 38/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQV S YSLL  A S+  I+ +       ++A+TD N ++ A+EF +   + GI+P
Sbjct: 5    SFVHLQVRSGYSLLNSAASVKEIVTQAKELGYSSLALTDENVMYGAIEFYKACKSHGIKP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    I   +                 +VLL  T  GYQ L+++ S +  + +G    
Sbjct: 65   IIGLTASIYTDETELEARP----------LVLLAETNTGYQNLLKISSALQSIAKGGMK- 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
                 W++    EGLI +T G +G I+        + A +    F++LFG+ R Y+  Q 
Sbjct: 114  ---RKWMKSYH-EGLIAITPGENGYIESLLQAGEFEEAVRVAEGFRELFGEGRFYLGYQP 169

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +G++   E  +++L+   E+ + A  +  ++ +ED +A+  L A+        +     
Sbjct: 170  FKGHETLSEE-ILRLSAETEIAVCAAGDVRYIKKEDQDAYRCLCAIKAGEKWEDQSGDLP 228

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                YL+   EM +I+   PEA++    +A++C   + +    LP F   +     K  +
Sbjct: 229  DL--YLRPPEEMENIYMKNPEAVKAAARVAQQCQVDVSLGQTQLPSFPAPDG----KSAD 282

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L      GL        +  G   +   +RL++EL+VI RMKFS YFLIV DF+++A 
Sbjct: 283  DYLAEVCHEGLR-------LRFGTPDERAVRRLEYELDVIRRMKFSDYFLIVWDFMKYAH 335

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ AY+L ITD+DPL+ SLLFERFLNP+R+SMPD DIDF   RRD
Sbjct: 336  EKGIVTGPGRGSAAGSLVAYSLFITDVDPLKHSLLFERFLNPERISMPDIDIDFPDTRRD 395

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YVQNKYG   VAQIITFG+L AKAALRD GR   +   + D+L +LIP+ P   + 
Sbjct: 396  EVIQYVQNKYGSMHVAQIITFGTLAAKAALRDTGRVFGISPKEADQLARLIPSKPGMTLE 455

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                   ++          + ++ +I++K+EGL RH STHAAG+V+   PLS++VP+  +
Sbjct: 456  EAR-RQSAQLNRRLSESAVLHKVFQIARKIEGLPRHTSTHAAGVVLSKEPLSEVVPLQ-E 513

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHE 607
                + +TQ+ M  +E  GL+K DFLGL+ LTL++        +   K+D S I + D +
Sbjct: 514  GHDGVYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESIKTMIEKETNTKIDFSEISYQDEK 573

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL+   T GIFQLESSGMR  L+ ++P  +EDI+A+ +LYRPGP++NI ++ +RK+G
Sbjct: 574  TFSLLSNGDTTGIFQLESSGMRNVLKRLKPSRLEDIVAVNALYRPGPMENIPLFIDRKHG 633

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            + ++   H  +  +L +T GVI+YQEQ+M IA  ++G+SL EAD+LRRA+ KK K+ +D+
Sbjct: 634  RARVEVPHEDVRNILSDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKQKDILDR 693

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ G  K   S   A  +++L+ KFA+YGFN+SHA AY++I YQ A++K HYP+ F
Sbjct: 694  ERSHFVEGCLKKEYSVVTANEVYDLIVKFANYGFNRSHAVAYSMIGYQLAYLKAHYPLYF 753

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +   +T  + N +KI ++  +A+   +Q++PPSVN     F   +  + YSL AIK VG 
Sbjct: 754  MCGLLTSVIGNEDKISQYLHEAKGSGLQVLPPSVNKSGFPFAPENGAVRYSLRAIKNVGV 813

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            +  + I +A   KPF+ L DFC RV +K +NR+ +E+L+F+GA+D F  +R  LL S+D 
Sbjct: 814  SAVKDIYKARTHKPFEDLFDFCFRVPAKSVNRKTIEALIFSGAMDEFNQNRAALLASVDV 873

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              ++A+    +  +    +F   + +FS K    +        +   E+  LG YFS HP
Sbjct: 874  ALEHAELFRAD--DDQMGLF--LEESFSIKPKYVEAEEFPLVDKLRFEKEALGVYFSSHP 929

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L  ++ +L+K G +    ++   +G  + + A++   +  +T+ G  + ++T S+   E 
Sbjct: 930  LSAFRNLLKKRGAQAIATALQMPKGQ-LSIGALLAGIKTIRTKTGQHMAFLTLSDETGEM 988

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 989  EAVVFP 994


>gi|17546924|ref|NP_520326.1| DNA polymerase III subunit alpha [Ralstonia solanacearum GMI1000]
 gi|17429224|emb|CAD15912.1| probable dna polymerase III (alpha chain) protein [Ralstonia
            solanacearum GMI1000]
          Length = 1173

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1061 (38%), Positives = 606/1061 (57%), Gaps = 52/1061 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             SP FVHL++HS YS+++G + L+  +   AAD   A+A+TD  N F  + F ++A   G
Sbjct: 2    NSPRFVHLRLHSEYSVVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI+G  + I   D                 ++LLV   +GY  L  L++R +L +Q +
Sbjct: 62   VKPIVGADVWITNHDERDKP----------SRLLLLVRNKQGYLNLCMLLARAWLSNQHR 111

Query: 127  QSVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                +   W  E G E      GL+ L+G   G I  A    +  +A K    + ++F  
Sbjct: 112  GRAEVAPEWFGEPGVEEAPMATGLLALSGAMGGDIGMALANGNEALARKLATQWSQVFPA 171

Query: 181  RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQR           Q V+LA + +LP+VAT+   F++ +D+ AH+  + +A   +
Sbjct: 172  SFYIELQRAGNAGTEAYVQQAVKLAASMQLPVVATHPVQFMTPDDFTAHEARVCIAEGDL 231

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R  R T D Y K + EM ++F+D+P AL NT +IA+RC+  L++  P LP F   
Sbjct: 232  LANPRRTRRFTTDQYFKTQDEMCALFADIPSALANTAQIAQRCNLTLELGKPKLPLFPTP 291

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +   +    ++ L + A  GLE R+A        +     +Y  RL+FE   I +M F G
Sbjct: 292  DGMSL----DDYLVHLAKDGLEKRMAVLFPDEAVREAKRPEYYARLEFETGTIIKMGFPG 347

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM
Sbjct: 348  YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD +
Sbjct: 408  PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467

Query: 476  CKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP  P   V+++    ++    E    +  V +LLE++Q++EG+ R+   HA G++I
Sbjct: 468  AKLIPFKPGKLVTIEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527

Query: 535  GDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA--- 590
                L+   P+Y +       V+Q++   +E  GL+KFDFLGL TLT+L  +  ++    
Sbjct: 528  APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRTLD 587

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  + S IP  D   + +L T  T+ +FQLES GM+  L+  +PD  EDIIALV+LY
Sbjct: 588  PSRADWNCSHIPLTDKAAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  A
Sbjct: 648  RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM + +E F  GA+K+G+S   A  IF+L+ KFA YGFNKSHAAAYA
Sbjct: 708  DLLRRAMGKKKAEEMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYA 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDFK 829
            +++Y TAW+K H+P EF+AA+M+L MD+ +K+K    DAR +  + ++PP +N     F 
Sbjct: 768  LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDARGKNGLAVLPPDINASQYRFT 827

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              D   I Y L  +KG G      I+ A  D PF  L DFC RVD +++NRR +E+LV A
Sbjct: 828  PTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVE 946
            GA D    +R QLL S+          +K       ++F       +++    L   +  
Sbjct: 888  GAFDSLNANRAQLLVSIG--LAMEAAEQKAAAANQVSLFDLMGSDDAEQHRPELLDEAPW 945

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------------TIRGN 993
            ++  + + E++ LGFY SGH  D  +  +R+       +                +    
Sbjct: 946  STKRKLQEEKQALGFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNNGGGYGSRDAR 1005

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE--YEANFF 1032
            N  +A ++V  + + T++G  +  V   + ++    E   F
Sbjct: 1006 NKTVAGVIVGLRTQMTQRGK-MIVVMLDDGSQSEATEVTVF 1045


>gi|317179636|dbj|BAJ57424.1| DNA polymerase III subunit alpha [Helicobacter pylori F30]
          Length = 1211

 Score =  708 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1078 (34%), Positives = 583/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     ++             A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +    KA  GL+ RL    +        Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLNFEDDASYFAYKAREGLKERL---VLVPKEKHDQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E     
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERTKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|237718270|ref|ZP_04548751.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_2_4]
 gi|299147818|ref|ZP_07040881.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_23]
 gi|229452454|gb|EEO58245.1| DNA polymerase III alpha subunit [Bacteroides sp. 2_2_4]
 gi|298514001|gb|EFI37887.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_23]
          Length = 1268

 Score =  708 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1142 (31%), Positives = 562/1142 (49%), Gaps = 124/1142 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC A I        +PIIGC++ +       
Sbjct: 63   KGEVKDLKKRIAGIEAGTIECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L     GY  LI+LVS  +         R   S L++   EGL
Sbjct: 120  MDLKEGKPDQSGYHLIVLAKNETGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +         AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 178  IICSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLELQRHKATVPRANHECYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ A    + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKHLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    ++    +   
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYREKFTE 357

Query: 314  KAVAGLEVRLAQGA-----------------------------------------IAKGY 332
            K +     +   G                                          I    
Sbjct: 358  KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
              ++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS  AY L 
Sbjct: 418  LTEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRLCKL+P+           AIA     + A  + DP +
Sbjct: 538  MATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEASSDPLL 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIE 564
               ++ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R V+VD+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDISDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKP 861
            K   + +   IQ + P VN   + F V  D  I + L A+KGVG    + IM E   + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGDIRFGLGAVKGVGEAAVQSIMEERRKNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              + ++     ++F  E         + +     +   R   E+ ++G Y S HPLD + 
Sbjct: 1018 RYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077

Query: 973  PILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +      +        G  I +  +V S ++  ++ G+  G     + +   E  
Sbjct: 1078 IVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137

Query: 1031 FF 1032
            F+
Sbjct: 1138 FW 1139


>gi|293368783|ref|ZP_06615387.1| putative DNA polymerase III subunit alpha [Bacteroides ovatus SD CMC
            3f]
 gi|292636088|gb|EFF54576.1| putative DNA polymerase III subunit alpha [Bacteroides ovatus SD CMC
            3f]
          Length = 1268

 Score =  708 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1142 (31%), Positives = 565/1142 (49%), Gaps = 124/1142 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC A I        +PIIGC++ +       
Sbjct: 63   KGEVKDLKKRIAGIEAGTIECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L     GY  LI+LVS  +         R   S L++   EGL
Sbjct: 120  MDLKEGKPDQSGYHLIVLAKNETGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +         AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 178  IICSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLELQRHKATVPRANHECYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ A    + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKHLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK--------------- 298
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P F                  
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357

Query: 299  -----------ECDDIQKEEENELRNKAVAGLEV---------------RLAQGAIAKGY 332
                         + +  EE+ + + K + G +                      I    
Sbjct: 358  KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
              ++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS  AY L 
Sbjct: 418  LTEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRLCKL+P+           AIA     + A  + DP +
Sbjct: 538  MATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEASSDPLL 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIE 564
               ++ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R V+VD+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDISDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKP 861
            K   + +   IQ + P VN   + F V  D  I + L A+KGVG    + IM E   + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGDIRFGLGAVKGVGEAAVQSIMEERRKNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              + ++     ++F  E         + +     +   R   E+ ++G Y S HPLD + 
Sbjct: 1018 RYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077

Query: 973  PILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +      +        G  I +  +V S ++  ++ G+  G     + +   E  
Sbjct: 1078 IVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137

Query: 1031 FF 1032
            F+
Sbjct: 1138 FW 1139


>gi|319901087|ref|YP_004160815.1| DNA polymerase III, alpha subunit [Bacteroides helcogenes P 36-108]
 gi|319416118|gb|ADV43229.1| DNA polymerase III, alpha subunit [Bacteroides helcogenes P 36-108]
          Length = 1265

 Score =  708 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1147 (31%), Positives = 564/1147 (49%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF----------- 58
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF           
Sbjct: 3    DFVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSAP 62

Query: 59   ---SQKACA--AGI-----------------------------QPIIGCQLDIDMQDNLK 84
                ++     AGI                             +P+IGC++ +       
Sbjct: 63   RGEIKELKKRIAGIESGEIECEDREMEIAGCRAKIAEAESKLFKPVIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVS  +         R   + L++   EGL
Sbjct: 120  MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRNELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +    +  + AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 178  IICSACIGGEVPKKIINDRLEEAEEAIRWYKNLFGDDYYLELQRHKATVPRANHEAYPMQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +   +++++ A  + + ++ +N+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  QKANAKLLEYAKKYNIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K ++EM ++F D+PEAL NT+EI  +  +    HAPI+P F   E    ++E       
Sbjct: 298  MKTKAEMNALFEDIPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEEYRKKYSE 357

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L   A  G +      
Sbjct: 358  KDLFDEFTQDENGNVVLDEDAAKAKIKRLGGYEKLYRIKLEADYLAKLAFDGAKKLYGDP 417

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                   + + ++R+ FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS 
Sbjct: 418  L------SDEVKERMIFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSA 471

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V  KYG E+VA 
Sbjct: 472  VAYCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTEKYGQEKVAH 531

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL 503
            IIT+G++  K A++DV R  ++P S+ DRL KL+P+           AI      + A  
Sbjct: 532  IITYGTMATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLKNAIEYVPELQAAEA 591

Query: 504  -ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558
              DP V   L+ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+
Sbjct: 592  SPDPLVRDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL+++++++  +   RGV++D+  I   D  TY L     T
Sbjct: 652  EGSVIEDTGLIKMDFLGLKTLSIIKEAVANVRLHRGVELDIDKISIKDPATYKLYCDGRT 711

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+
Sbjct: 712  IGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPI 771

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI+G  
Sbjct: 772  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQ 831

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + 
Sbjct: 832  KNGHEPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLS 891

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA 856
            N+  I K   + +   I  + P VN   + F V  +  I + L A+KGVG    + IME 
Sbjct: 892  NITDITKLMDECKAMGINTLGPDVNESNLKFTVNREGNIRFGLGAVKGVGEGAVQSIMEE 951

Query: 857  S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907
               + P+  + DF  RV+    N++ +E L  AG  D F    R Q           ++ 
Sbjct: 952  REKNGPYKGIFDFVQRVNLNACNKKNIECLALAGGFDSFPELKREQYFAVNSKNEIFIET 1011

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E         +      +   R   E+ ++G Y S HP
Sbjct: 1012 LVRYGNRYQADQAAAANSLFGGENVVDIATPEILPAERWSDLDRLNRERDLVGIYLSAHP 1071

Query: 968  LDVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y  +L  +      E      + G  I +  +V S ++  ++ G+  G     + + 
Sbjct: 1072 LDEYAVVLEHVCNTRMAEVEDKQALVGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSG 1131

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1132 SAEFPFF 1138


>gi|317014874|gb|ADU82310.1| DNA polymerase III subunit alpha [Helicobacter pylori Gambia94/24]
          Length = 1211

 Score =  708 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1078 (34%), Positives = 585/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     ++             A++    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKRIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +    KA  GL+ RL    +        Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAKEEGLDFEDDASYFAYKAREGLKERL---ILVPKEKHDQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNEVAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V          + +I + L A+KGVG    ++I+E  A  
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F   +G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMEGGTKEQVILDMADLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|299066194|emb|CBJ37378.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum CMR15]
          Length = 1173

 Score =  708 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1061 (38%), Positives = 604/1061 (56%), Gaps = 52/1061 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             SP FVHL++HS YS+++G + L+  +   AAD   A+A+TD  N F  + F ++A   G
Sbjct: 2    NSPRFVHLRLHSEYSVVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++P++G  + I   D                 ++LLV   +GY  L  L++R +L +Q +
Sbjct: 62   VKPVVGADVWITNHDERDKP----------SRLLLLVRNKQGYLNLCMLLARAWLSNQHR 111

Query: 127  QSVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                I   W  E G E      GL+ L+G   G I  A    +  +A K    + ++F  
Sbjct: 112  GRAEIAPEWFGEPGVEAAPMATGLLALSGAMGGDIGMALANGNEALARKLATQWSQVFPA 171

Query: 181  RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQR           Q V+LA + +LP+VAT+   F++ +++ AH+  + +A   +
Sbjct: 172  SFYIELQRAGNAGTEAYVQQAVKLAASMQLPVVATHPVQFMTPDEFTAHEARVCIAEGDL 231

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R  R T D Y K + EM ++F+D+P AL NTV+IA+RC+  L++  P LP F   
Sbjct: 232  LANPRRTRRFTTDQYFKTQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTP 291

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +   +    ++ L   A  GLE R+         +     +Y  RL+FE   I +M F G
Sbjct: 292  DGMSL----DDYLVQLAKEGLEKRMEVLFPDEAVREAKRPEYYARLEFETGTIIKMGFPG 347

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM
Sbjct: 348  YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD +
Sbjct: 408  PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467

Query: 476  CKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP  P   V+L+    ++    E    +  V +LLE++Q++EG+ R+   HA G++I
Sbjct: 468  AKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527

Query: 535  GDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK---SLDFLA 590
                L+   P+Y +       V+Q++   +E  GL+KFDFLGL TLT+L      +  L 
Sbjct: 528  APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLD 587

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  + S IP  D   + +L T  T+ +FQLES GM+  L+  +PD  EDIIALV+LY
Sbjct: 588  PSKADWNCSHIPLTDKAAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  A
Sbjct: 648  RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM + +E F  GA+K+G+S   A  IF+L+ KFA YGFNKSHAAAYA
Sbjct: 708  DLLRRAMGKKKAEEMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYA 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDFK 829
            +++Y TAW+K H+P EF+AA+M+L MD+ +K+K    DAR +  + ++PP +N     F 
Sbjct: 768  LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDARGKNALAVLPPDINASQYRFT 827

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              D   I Y L  +KG G      I+ A  D PF  L DFC RVD +++NRR +E+LV A
Sbjct: 828  PTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVE 946
            GA D    +R QLL S+          +K       ++F       +++    L   +  
Sbjct: 888  GAFDSLNANRAQLLVSIG--LAMEAAEQKAAAANQVSLFDLMGSDDAEQHRPELLDEAPW 945

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-------------TIRGN 993
            ++  + + E++ LGFY SGH  D  +  +R+       +                +    
Sbjct: 946  STKRKLQEEKQALGFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNNGGGYGSRDAR 1005

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE--YEANFF 1032
            N  +A ++V  + + T++G  +  V   + ++    E   F
Sbjct: 1006 NKTVAGVIVGLRTQMTQRGK-MIVVMLDDGSQSEATEVTVF 1045


>gi|163841216|ref|YP_001625621.1| DNA polymerase III subunit alpha [Renibacterium salmoninarum ATCC
            33209]
 gi|162954692|gb|ABY24207.1| DNA polymerase III alpha subunit [Renibacterium salmoninarum ATCC
            33209]
          Length = 1176

 Score =  708 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1065 (34%), Positives = 557/1065 (52%), Gaps = 49/1065 (4%)

Query: 5    LEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +  +  SFVHL  H+ YS+L+GA  L ++ +  A     ++A TD   +F A +F  KA 
Sbjct: 1    MTGTESSFVHLHNHTEYSMLDGAARLTDLFEHTAELGMNSLATTDHGFVFGAFDFWSKAK 60

Query: 64   AAGIQPIIGCQLDIDMQ----DNLKMTNQGKTPFP-----TVPSIVLLVSTAEGYQRLIE 114
             AGI+PIIG +  +       D  ++     +            + L   T +G   L  
Sbjct: 61   NAGIKPIIGVEAYLTPGTAHNDRTRVKWGDGSGKDVAGAGAYTHMTLWSETTQGMHNLFR 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            + S   L +      R+    LQ  G +GLI  TG  SG +         + A +    F
Sbjct: 121  MSSLASL-EGYLYKPRMDRDLLQTYG-KGLIASTGCPSGEVPTKLGLGLYKEAVQAASDF 178

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + +FG    Y  L  H    +R  ++ +++LA    LPLVATN+  +   ED  AH  L+
Sbjct: 179  QDIFGKGNFYCELMDHGLDIERNVKADLLKLAKELNLPLVATNDLHYTHAEDASAHAALL 238

Query: 233  AVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
             V   + ++   R +    + YLK+  EM  +F D P+A +NT+ IA RC       A  
Sbjct: 239  CVQSGSTLADPKRFKFDADEFYLKSPLEMRELFRDFPDACDNTLLIAERCEVAFDTGASY 298

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            +PRF   E +     E++    +   GL  R   G         D R++ +FE+ VI +M
Sbjct: 299  MPRFPVPEGE----NEQSWFVKEVEKGLHYRYPGG------IPADVRKQAEFEVGVITQM 348

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPL+  L+FERFLNP+
Sbjct: 349  GFPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLDPLKHGLIFERFLNPE 408

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPDFD+DF   RR EVIRYV  KYG ERVA I+T+G+++AK AL+D  R L  PYS 
Sbjct: 409  RVSMPDFDVDFDDRRRGEVIRYVTEKYGDERVAMIVTYGTIKAKQALKDSSRVLGYPYST 468

Query: 472  VDRLCKLIPND---------PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             +RL K +P D           H    +  ++    RE    DP   ++ + +  +EGL 
Sbjct: 469  GERLTKAMPPDVMGKGMALTDVHNKEAKRYSEAEELRELIKTDPDSQKVFDTAIGIEGLK 528

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R    HAAG+++   PL  ++P+ R  +    +TQF+    E  GLIK DFLGL+ LT++
Sbjct: 529  RQWGVHAAGVIMSSDPLIDIIPIMRREQDGQIITQFDYPTCEGLGLIKMDFLGLRNLTII 588

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              +++ +   R   +DL  +  DD  +Y LL    TLG+FQL+   MR  L+ M+PD  E
Sbjct: 589  SDAIENIKLNRDFDLDLEGLELDDVPSYELLARGDTLGVFQLDGGPMRSLLKLMKPDNFE 648

Query: 642  DIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQV 695
            DI A+++LYRPGP+  ++   Y  RKN  ++I  IHP ++  L++    T G+I+YQEQV
Sbjct: 649  DISAVLALYRPGPMGVNSHTNYALRKNKLQEITPIHPELEAPLEDILGTTYGLIVYQEQV 708

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M  AQ L+G+SL +AD+LRRAMGKK K E+DKQ+  F +G   NG S+     ++++L  
Sbjct: 709  MAAAQKLAGFSLGQADILRRAMGKKKKSELDKQQADFFAGMKTNGYSQAAMDALWKVLES 768

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FADY FNK+H AAY +ISY TA++K HY  E++AA +T   D+ +K+  +  + R+  I 
Sbjct: 769  FADYAFNKAHTAAYGLISYWTAYLKEHYAAEYMAALLTSVGDDKDKLAIYLNECRRMGIT 828

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874
            ++PP VN   V+F   D  I + + AI+ VG    + ++ A  +   F++  D+  +V +
Sbjct: 829  VLPPDVNESSVNFTPVDTDIRFGMGAIRNVGANVVQAMVGAREEKGAFENFSDYLLKVPA 888

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
               N+R +ESL+ AGA D  G+ R  L+   +        +++N      ++FA      
Sbjct: 889  VVCNKRTIESLIKAGAFDSLGHPRRALVAVHEEAIDSVVVLKRNEAVGQFDLFAGFSDEE 948

Query: 935  SDK---ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---A 988
            ++      +          +   E+ +LG Y S HPL   + +L +         +    
Sbjct: 949  AEPGFSTDVPDLPEWEKKDKLAFERDMLGLYVSDHPLRGLEGVLSQHAEHTISYLIGEDG 1008

Query: 989  TIRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               G  + +A M+ S  ++     G+        +     E  FF
Sbjct: 1009 LSDGAIVTIAGMITSLSRRIAKASGNAYARAEIEDLGASMEVMFF 1053


>gi|308185224|ref|YP_003929357.1| DNA polymerase III subunit alpha [Helicobacter pylori SJM180]
 gi|308061144|gb|ADO03040.1| DNA polymerase III subunit alpha [Helicobacter pylori SJM180]
          Length = 1211

 Score =  708 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1078 (34%), Positives = 583/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +++  +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKEDKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL   
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYLK-G 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     N+             A++    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +KA  GL+ RL    +        Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLNFEDDASYFAHKAREGLKERL---ILVPKEKHDQYQERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWYKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V          + +I + L A+KGVG    ++I+E     
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERTKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F   +G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMEGGIKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|118469839|ref|YP_887493.1| DNA polymerase III subunit alpha [Mycobacterium smegmatis str. MC2
            155]
 gi|118171126|gb|ABK72022.1| DNA polymerase III alpha subunit [Mycobacterium smegmatis str. MC2
            155]
          Length = 1184

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/1062 (30%), Positives = 515/1062 (48%), Gaps = 41/1062 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S SFVHL  H+ YS+L+GA  +  +L +    + PAI +TD  N+F A EF   A  AG
Sbjct: 8    SSGSFVHLHNHTEYSMLDGAAKITPMLAEAQRLEMPAIGMTDHGNMFGASEFYNSATKAG 67

Query: 67   IQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            I+PIIG +  I                       +       + ++   A G + L +L 
Sbjct: 68   IKPIIGIEAYIAPGSRFDTKRVTWGDPGQKGDDVSGSGAYTHMTMVAENATGLRNLFKLS 127

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S      Q  +  R+    + E   EG+I  TG  SG +         + A +    +++
Sbjct: 128  SLASFEGQLGKWSRMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHEREALEAAAKWRE 186

Query: 177  LFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            +FG +  ++ L  H    +R     ++++     +P +ATN+  +++ E    H+ L+ V
Sbjct: 187  IFGPENFFLELMDHGLDIERRVREGLLEIGRKLGIPPLATNDCHYVTREAARNHEALLCV 246

Query: 235  AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                 +S   R +   D Y    +E +    D          +                 
Sbjct: 247  QTGKTLSDPTRFKFDGDGYFLKSAEEMRALWDSQVPGACDSTLLIGERVQSYADVWEPRD 306

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
             +         ++ + L ++  AGLE R   G +      ++Y  R ++E+ VI    F 
Sbjct: 307  RMPVFPVPEGHDQASWLTHEVKAGLERRFRGGPV-----PEEYTTRAEYEIKVICDKGFP 361

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFLIVAD I +A+   I VGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R S
Sbjct: 362  SYFLIVADLINYARSVGIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERPS 421

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQV 472
             PD DIDF   RR E++RY  N++G ERVAQ+ITFG+++ KAAL+D  R    Q  ++  
Sbjct: 422  APDIDIDFDDRRRGEMLRYAANRWGSERVAQVITFGTIKTKAALKDSARVNFGQPGFAIA 481

Query: 473  DRLCKL-IPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            DR+ K   P   A  +          +   + +  R     DP V  + E ++ LEGL R
Sbjct: 482  DRITKALPPPIMAKDIPLSGITDPNHERYKEAAEVRGLIDTDPDVRTIYETARGLEGLVR 541

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
            +A  HA  +++   PL   +P+++  +    +T ++    E  GL+K DFLGL+ LT++ 
Sbjct: 542  NAGVHACAVIMSSEPLIDAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTIIG 601

Query: 584  KSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             ++  +   RG+ +DL  +P DD   Y LL+   TLG+FQL+   MR  L  MQP    D
Sbjct: 602  DAIANIKANRGIDLDLETLPLDDPAAYELLSRGDTLGVFQLDGGPMRDLLRRMQPTGFND 661

Query: 643  IIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVM 696
            I+A+++LYRPGP+       Y +RKNG++ I  IHP ++  LK+    T G+I+YQEQ+M
Sbjct: 662  IVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLKDILAETYGLIVYQEQIM 721

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
             IAQ ++ Y++ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++ +  F
Sbjct: 722  FIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFKEGMTANGFSEGAVKALWDTILPF 781

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A Y FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  I +
Sbjct: 782  AGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRRLGITV 841

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSK 875
            +PP VN    +F    + I + L AI+ VG      +++       F    D+ +++D  
Sbjct: 842  LPPDVNESEHNFASVGDDIRFGLGAIRNVGANVVSSLIKTRTEKGKFTDFSDYLNKIDIT 901

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
              N++V ESL+ AGA D  G+ R  L     +        +K       ++F   + T +
Sbjct: 902  ACNKKVTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGGEDTGT 961

Query: 936  DKITLEKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIR 991
            D +   K          +   E+ +LG Y SGHPL+    +L           +      
Sbjct: 962  DAVFTIKVPDEEWEDKHKLALEREMLGLYVSGHPLNGVAHLLANQVDTQIPAILDGDVAN 1021

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               + +  ++ S  ++  + G         +     E  FFP
Sbjct: 1022 DAQVLVGGILASVNRRVNKNGLPWASAQLEDLTGGIEVLFFP 1063


>gi|260772237|ref|ZP_05881153.1| DNA polymerase III alpha subunit [Vibrio metschnikovii CIP 69.14]
 gi|260611376|gb|EEX36579.1| DNA polymerase III alpha subunit [Vibrio metschnikovii CIP 69.14]
          Length = 1109

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/997 (40%), Positives = 577/997 (57%), Gaps = 37/997 (3%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F   A + GI+PIIG    +          +       +  I +L     GY+ L  L
Sbjct: 1    MKFYGTAHSCGIKPIIGADFTL----------RSDEFADELTKITILAKNNIGYKNLTLL 50

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +S  YL    +    I   WL +   EGLI+L+GG +G I RA    +  +AEK +  ++
Sbjct: 51   ISEAYLRGHVQHQPVIDKQWLVK-HAEGLIILSGGKNGEIGRALLKGNQALAEKCVEFYQ 109

Query: 176  KLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
              F D  Y+ L R    D        + LA   +LP+VATN  +FL+ E ++AH++ +A+
Sbjct: 110  TYFADHFYLELVRTGRADEESYLHFALDLAEQTQLPVVATNEVVFLNAEQFDAHEIRVAI 169

Query: 235  AHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
                 +    RP+  +P  YL+   EM  +F+D+P+ALEN+VEIA+RC+  +++      
Sbjct: 170  HDGYTLEDPRRPKNYSPQQYLRTEQEMCELFADIPQALENSVEIAKRCNVTVRLGEYF-- 227

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
                          E  L  K+  GLE RL         +     +Y +RLD EL VI +
Sbjct: 228  ---LPNFPTGGLAIEEFLVVKSKQGLEERLEFLFPDPQVRAERRPEYDERLDIELQVINQ 284

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 285  MGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 344

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFD+DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+ 
Sbjct: 345  ERVSMPDFDVDFCMDKRDQVIDHVAELYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFG 404

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
             VDR+ KLIP DP   +  +A   +   +E   AD  V  L++  + LEG  R+A  HA 
Sbjct: 405  FVDRISKLIPPDPGMTLE-KAFKAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAG 463

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L  + 
Sbjct: 464  GVVISPTTITDFAPLYCDAEGHHPVTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGLIN 523

Query: 591  QRGV-----KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             R        + +  IP  D  ++ LL    T  +FQLES GM++ ++ ++PDC EDIIA
Sbjct: 524  PRRTALGEEPLRIEAIPLQDEASFRLLQKSETTAVFQLESRGMKELIKRLKPDCFEDIIA 583

Query: 646  LVSLYRPGPIDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQI 698
            LV+L+RPGP+ + +V  + +RK+G+E I        H  +  +L+ T G+I+YQEQVMQI
Sbjct: 584  LVALFRPGPLQSGMVDNFIDRKHGREVISYPDEKWQHESLKEILEPTYGIILYQEQVMQI 643

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A+ IF+L+ KFA 
Sbjct: 644  AQVLAGYTLGGADMLRRAMGKKKPEEMAKQRAIFKEGAENNGVDGELAMKIFDLVEKFAG 703

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            YGFNKSH+AAYA++SYQT W+KTHYP EF+AA MT +MDN EK+     + ++  + ++P
Sbjct: 704  YGFNKSHSAAYALVSYQTLWLKTHYPAEFMAAVMTADMDNTEKVVGLVDECQRMGLTVLP 763

Query: 819  PSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKK 876
            P +N+    F V  +  I Y + AIKGVG      I+++   +  F  L DFC+R+D KK
Sbjct: 764  PDINSGLYSFNVDENGAIVYGIGAIKGVGEGPIEAILDSRSKNGYFKDLFDFCARIDLKK 823

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            +N+RV+E L+ AGALD  G  R  ++ SLD+  K A    +       ++F        +
Sbjct: 824  VNKRVIEKLILAGALDRLGPHRAAMMASLDDAVKAASQHHQAEAFGQADMFGVLTDAPEE 883

Query: 937  -KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
             +    +       V  E E+  LG Y +GHP++ Y   L K       E+  T R  ++
Sbjct: 884  VEQKYTQVPPWPEKVWLEGERETLGLYLTGHPINQYLKELPKYTSCRLNEATPTRRDQSL 943

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             LA +V++ +   T++GSRIG +T  + +   E   +
Sbjct: 944  TLAGLVIAARVMTTKRGSRIGLMTLDDRSGRIEVMLY 980


>gi|254480316|ref|ZP_05093564.1| DNA polymerase III, alpha subunit subfamily, putative [marine gamma
            proteobacterium HTCC2148]
 gi|214039878|gb|EEB80537.1| DNA polymerase III, alpha subunit subfamily, putative [marine gamma
            proteobacterium HTCC2148]
          Length = 1135

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1025 (38%), Positives = 577/1025 (56%), Gaps = 43/1025 (4%)

Query: 33   LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92
            + ++A    PA+A+TD +N +  ++  + A +AG+QPI G  L +   D+ + +      
Sbjct: 1    MSRVAELGMPAVAVTDVSNFYGLVKVHKSAFSAGVQPIFGTDLRVLDADDPEKS------ 54

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  + LL     GY  L  L+SR Y   Q      +  +WL+E   EG+I L+ G+ 
Sbjct: 55   ----YPLCLLAMNQTGYHNLTLLISRSYTEGQYLGVPYVQKAWLEEC-AEGVIALSAGAR 109

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPL 211
            G + +A     S++A  R   +  L+  R Y+ L R     D       V LA   + P+
Sbjct: 110  GDVGQAIIGEKSELAVARAKYWMALYPQRFYLELHRTGREGDETHLHGAVNLAAQLQCPV 169

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEA 270
            VATN+  FL   ++EAH+  + +     +    R R  T   YL++  EM  +F+D+PEA
Sbjct: 170  VATNDVRFLDASEFEAHEARVCIGEGRTLDDPRRARSYTEQQYLRSPEEMTELFADIPEA 229

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL----EVRLAQG 326
            L NTV+IARRC+ +L++  P LP +   E        +   R  +  GL    E      
Sbjct: 230  LANTVQIARRCNVVLELGKPYLPDYPVPEGM----TMDEFFRQLSHDGLDARLEALFDSS 285

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
            A       + YR+RL+FEL  I +M F GYFLIV DFI+WAK+++IPVGPGRGSGAGS+ 
Sbjct: 286  ADDFPAKQKQYRERLEFELETIIQMGFPGYFLIVMDFIRWAKQHDIPVGPGRGSGAGSLV 345

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AYA+ ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI YV + YG E V+QI
Sbjct: 346  AYAMEITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDYVADTYGREAVSQI 405

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
            ITFG++ AKA +RDV R     Y   D+L KLIP +    +  +A+  +   +E    D 
Sbjct: 406  ITFGTMAAKAVVRDVARVQGKSYGLADKLSKLIPFEVGMTLE-KALEQEEALKEFLAEDE 464

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
                + +++++LEG+ R    HA G+VI    L+   P++ D      VTQ++   +E A
Sbjct: 465  QAQEIWDMAEQLEGVTRGVGKHAGGVVIAPSKLTDFSPLFCDESGSGLVTQYDKGDVEDA 524

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLA-----QRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            GL+KFDFLGL+TLT++  ++  +           +D+  IP DD  ++ LL +  T  +F
Sbjct: 525  GLVKFDFLGLRTLTIIDWAVKMINTVRDTDGQAPLDIMQIPLDDQPSFTLLKSAKTTAVF 584

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK-------EKIVSI 674
            QLESSGM+  +E +QPDC EDI+ALV+L+RPGP+ + +V N                   
Sbjct: 585  QLESSGMKDLIERLQPDCFEDIVALVALFRPGPLQSGMVDNFINRKHGREELSFPDAKWQ 644

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            H  + P+L+ T G+I+YQEQVMQIAQ L+GY+L  AD+LRRAMGKK  EEM KQ+  F  
Sbjct: 645  HEWLKPILQPTYGIILYQEQVMQIAQELAGYTLGGADMLRRAMGKKKPEEMAKQRTIFEE 704

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            GA   G+   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTHYP  F+AA M+ 
Sbjct: 705  GAKSKGVDSELAMRIFDLVEKFAGYGFNKSHSAAYALVSYQTCWLKTHYPAPFMAAVMSS 764

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHI 853
            E+DN +KI  F  + ++  + +  P VN     F V     I Y L AIKG+G      I
Sbjct: 765  ELDNTDKIVVFVDECKRMKLSLKLPDVNEGQYMFTVNAQGDIIYGLGAIKGLGEGPVEII 824

Query: 854  MEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            +     D PF  L DFC+R D +K+NR+ +E+L+ +GALD  G +R  L+ S+++  K A
Sbjct: 825  LATRETDGPFTDLFDFCARTDPRKVNRKAIEALIRSGALDSLGETRWVLMASMEDALKAA 884

Query: 913  QWVEKNRTNKHENIFAH-----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +    NR    +++F       E GT        K        R   E+  LG Y +GHP
Sbjct: 885  EQSASNRDAGIDDLFGEVVPSQENGTEDVYAGFRKVRPWTDKERLGGERDTLGLYITGHP 944

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            +D Y+  +RK   K   +     +GN + +  ++++ +   T++G+ +  +T  + + + 
Sbjct: 945  IDEYQVEIRKFAPKRIVDVRPDKQGNQLLV-GLIMATRTMNTQRGT-MAVLTLDDSSAQM 1002

Query: 1028 EANFF 1032
            E   F
Sbjct: 1003 EVTLF 1007


>gi|261879187|ref|ZP_06005614.1| DNA-directed DNA polymerase III alpha subunit [Prevotella bergensis
            DSM 17361]
 gi|270334182|gb|EFA44968.1| DNA-directed DNA polymerase III alpha subunit [Prevotella bergensis
            DSM 17361]
          Length = 1239

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1120 (31%), Positives = 548/1120 (48%), Gaps = 107/1120 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------ 63
             FVHL VH+ YS+L+G   +  ++DK  +D    +AITD   ++   E            
Sbjct: 3    DFVHLHVHTHYSVLDGQSKVRKLVDKAISDGMKGMAITDHGVMYGIKELFDYCATINKKR 62

Query: 64   -AAGI---QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
             + G+   +PI+GC++ +   +      +      +   +++L    +GY+ LI+LVSR 
Sbjct: 63   ASEGLDPFKPILGCEMYVAHHNKEDKVREDG--DASGYHLIVLAKNYKGYKNLIKLVSRA 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            ++        R   + L++   EGLI+ +   +G +         + A +    + +LFG
Sbjct: 121  WVHG-YYYKPRTDRTDLEKYH-EGLIICSACIAGEVPSKILKGDIEGAREACEWYHRLFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     +++ A  + + +V TN+  F  ++  E
Sbjct: 179  DDFYLELQRHEVKDPSIRANREVFPLQQKANQVMMEFAKEYGIKVVCTNDCHFEDQDTAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++ S  +    R   T   + K+R EM  IFSD+PEAL NTVEI  +      
Sbjct: 239  AHDHLLCLSTSKDLDDPFRLMYTKQEWFKSREEMNEIFSDIPEALRNTVEILDKVELYSI 298

Query: 287  VHAPILPRFIEKECDDIQKE---------------------------------------- 306
              +PI+P F   +    ++E                                        
Sbjct: 299  NSSPIMPYFPIPKEFGTEEELRKKYTEEDLFREFTTDENGQNPLPEEEAHKVIDRLGGYD 358

Query: 307  -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E + L   A  G +               + R+ ++FEL+V+  M F GYFLI
Sbjct: 359  KIYRIKLEADYLGKLAFDGAKKNYGDPV------PDNVREHINFELHVMKTMGFPGYFLI 412

Query: 360  VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V DFI  A+    + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD 
Sbjct: 413  VQDFIAAARNELGVWVGPGRGSAAGSVVAYCLGITRIDPLKYDLLFERFLNPDRVNLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R +V+R+V +KYG E  A IIT+ S+  K ++ DV R  ++P  + + L K 
Sbjct: 473  DTDFDDDGRGKVLRWVMDKYGEENCAHIITYSSMATKNSIADVARVERLPLERANMLKKA 532

Query: 479  IP---NDPAHPVSLQAIADDSRFREARL-ADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP    D        AI      REA    DP     ++ +++LEG  R    HA G +I
Sbjct: 533  IPDRLPDGKKMNLRNAIEYTPELREAEASTDPRERNTIKYAKQLEGTVRGTGIHACGFII 592

Query: 535  GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               P+ + VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ L+++   +
Sbjct: 593  CRDPIDEWVPVSTADDPDFPELKCAVTQYDGHVIEDTGLIKMDFLGLKTLSELKEACKVV 652

Query: 590  AQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             + RGVKVD+  IP DD  TY L     T+G FQ ES GM++ L  + P   ED+IA+ +
Sbjct: 653  ERTRGVKVDIDKIPIDDELTYKLYQQGRTIGTFQFESPGMQKYLRELHPTVFEDLIAMNA 712

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RKN    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  
Sbjct: 713  LYRPGPMDYIPDFIKRKNDPSLVTYDIPCMEQYLKDTYGITVYQEQVMLLSRQLANFTRG 772

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E+D LR+AMGKK K  +D+ K +F+     NG  K +   I+    KFA Y FNKSHA  
Sbjct: 773  ESDALRKAMGKKKKAIVDQMKPKFLKQGMANGHDKNVLEKIWNDWEKFASYAFNKSHATC 832

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ ++YQTA++K HYP E++AA MT    ++ +I K  ++ +  +I  + P VN   V+F
Sbjct: 833  YSWVAYQTAYLKAHYPAEYMAALMTRRFADIGEITKLMEECKAMDIPTLGPDVNESYVEF 892

Query: 829  KVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V     I + L+AIKG+G+  A  I++    + P+  + DF  RV  + +NR+ +ESL 
Sbjct: 893  GVNKKGEIRFGLSAIKGMGSGAADAIVKERQKNGPYKDIYDFVGRVSLRDINRKAMESLA 952

Query: 887  FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKI 938
             +G  DCFG  R Q +Q        LD++ ++ Q  ++++     ++F            
Sbjct: 953  LSGGFDCFGLMREQYMQVNAKGDVFLDSLVRFGQQYQQDKMESANSLFGGMVSEIAIATP 1012

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------G 992
               K    ++  +   E+ ++G Y S HPLD Y  +L  +      E+            
Sbjct: 1013 PAPKAEEWSAIEKLGKEKELVGIYLSAHPLDDYILVLDNLCNTSCTEAGNRENYAELSMR 1072

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +    +V    Q+  ++G   G VT  +     E   F
Sbjct: 1073 QEVTFGGIVTKVTQRFNKRGEPFGIVTIEDFGGPGEIALF 1112


>gi|300703510|ref|YP_003745112.1| DNA polymerase III subunit alpha [Ralstonia solanacearum CFBP2957]
 gi|299071173|emb|CBJ42487.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum CFBP2957]
          Length = 1176

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1064 (38%), Positives = 605/1064 (56%), Gaps = 55/1064 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL++HS YS+++G + L+  +   AAD   A+A+TD  N F  + F ++A   G
Sbjct: 2    NPPRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++P++G  + I   D                 ++LLV   +GY  L  L++R +L +Q +
Sbjct: 62   VKPVVGADVWITNHDERDKP----------SRLLLLVRNKQGYLNLCTLLARAWLSNQHR 111

Query: 127  QSVRICLSWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                I   W  E G E      GL+ L+G   G +  A    +  +A K    + ++F  
Sbjct: 112  GRAEIAPEWFDEPGVEDAPLATGLLALSGAMGGDVGMALANGNEALARKLATHWSRVFPQ 171

Query: 181  RLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ LQR           Q V+LA + +LP+VAT+   F++++D+ AH+  + +A   +
Sbjct: 172  AFYIELQRAGQAGTEAYIQQAVKLAASMQLPVVATHPVQFMTQDDFTAHEARVCIAEGDL 231

Query: 240  VSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R  R + + Y K + EM ++F+D+P AL NTV+IA+RC+  L++  P LP F   
Sbjct: 232  LANPRRTRRFSTEQYFKKQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTP 291

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +   +    ++ L + A  GLE R+      A  +     +Y  RL+FE   I +M F G
Sbjct: 292  DGMSL----DDYLVHLAKDGLEKRMEVLFPDAAVREAKRPEYYARLEFETGTIIKMGFPG 347

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SM
Sbjct: 348  YFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSM 407

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFCQ  RD VI YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD +
Sbjct: 408  PDFDIDFCQHGRDRVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGV 467

Query: 476  CKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             KLIP  P   V+L+    ++    E    +  V +LLE++Q++EG+ R+   HA G++I
Sbjct: 468  AKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLI 527

Query: 535  GDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK---SLDFLA 590
                L+   P+Y +       V+Q++   +E  GL+KFDFLGL TLT+L      +  L 
Sbjct: 528  APGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLD 587

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  + S IP  D   + +L    T+ +FQLES GM+  L+  +PD  EDIIALV+LY
Sbjct: 588  PSKADWNCSHIPLTDKPAFDILKAANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALY 647

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  A
Sbjct: 648  RPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGA 707

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM + +E F  GA+K+G+S   A  IF+L+ KFA YGFNKSHAAAYA
Sbjct: 708  DLLRRAMGKKKAEEMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYA 767

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDFK 829
            +++Y TAW+K H+P EF+AA+M+L MD+ +K+K    DA  +  ++++PP +N     F 
Sbjct: 768  LLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDAAGKNGLKVLPPDINASLYRFT 827

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              D   I Y L  +KG G      I+ A  D PF  L DFC RVD +++NRR +E+LV A
Sbjct: 828  PTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRA 887

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSVE 946
            GA D    +R QLL S+          +K       ++F    G  +++    L   +  
Sbjct: 888  GAFDSLNDNRAQLLVSIG--LAMEAAEQKAAAANQVSLFDLMSGEDAEEHRPELLDEAPW 945

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA----------------TI 990
             +  + + E++ LGFY SGH  D  +  +R+       +                   + 
Sbjct: 946  TTKRKLQEEKQALGFYLSGHLFDECRDEVRRFARTTLADLAREVNGNGNGNGNGGGYGSR 1005

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE--YEANFF 1032
               N  ++ ++V  + + T++G  +  V   + ++    E   F
Sbjct: 1006 DARNKTVSGVIVGLRTQMTQRGK-MIVVMLDDGSQSEATEVTVF 1048


>gi|255319195|ref|ZP_05360412.1| DNA polymerase III subunit alpha [Acinetobacter radioresistens SK82]
 gi|262379698|ref|ZP_06072854.1| DNA polymerase subunit III [Acinetobacter radioresistens SH164]
 gi|255303588|gb|EET82788.1| DNA polymerase III subunit alpha [Acinetobacter radioresistens SK82]
 gi|262299155|gb|EEY87068.1| DNA polymerase subunit III [Acinetobacter radioresistens SH164]
          Length = 1188

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1039 (36%), Positives = 583/1039 (56%), Gaps = 47/1039 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ +S+ E  + + +++     D+ PA+A+TD +NL +A++F  K    GI+PI
Sbjct: 3    FVHLGIHTEFSITESIVRVPDLVKAAQKDEMPALALTDLSNLHAAVKFYGKCLGKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++  ++                + LL  T  G++ L ELVS  Y+  Q      
Sbjct: 63   LGSEIRLNDAEH---------------RMTLLAMTNTGWRNLTELVSEGYIRGQQLDIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
            +   W+ +   + LI L G  +  + +    ++ Q AE  L  +   FG+R+Y+ L R +
Sbjct: 108  VQKEWILDQNQD-LIALLG-MNSDVGKMLITSNPQKAEPLLEEWIAKFGNRVYLALTRTN 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     + V+LA  + + +VA N+  F++ +D+EAH+  + +A   V+    RP+  
Sbjct: 166  RPGEDDFIIEAVKLAQKYNIGVVAHNDVHFMTRDDFEAHEARVCIADGYVLGDNRRPKTY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ Y K+  EM  +FSD+P A+ENT  IA+RC+  LQ+    LP +   E        +
Sbjct: 226  SPEQYFKSSEEMTELFSDIPSAIENTYHIAKRCNVTLQLGKYFLPDYPIPEG----YTID 281

Query: 309  NELRNKAVAGLEV------RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE          +         + Y +R+++E+N+I  M F GYFLIV D
Sbjct: 282  TFFAHLSKEGLEERLNFLYPPEERDEYWPEIRKPYDERIEYEINIINSMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWSKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYELLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG + V+QI TFG++ AK A+RDV R L   Y   DR+ KLIP  
Sbjct: 402  CIAGRDRVIDYVARTYGRDAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKLIPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537
            P      +++  + + ++      + D      + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGLSLEESLQAEPQLKDIVTNPSNPDYDDASEIWEMALKLEGITRNTGKHAGGVVISPT 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596
             ++    +  D      V QF+   +E AGL+KFDFLGL+ LT+++ ++  + +R     
Sbjct: 522  KITDFSAVMCDADGTARVAQFDKDDVEAAGLVKFDFLGLRNLTVIEDAVKNINKRIKSDK 581

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ IP +D + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  PLDIAAIPLEDKDAYLVFANANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +   +    +   +HPL++ +L+ T G+++YQEQVMQ AQ  +GY+L  AD+LR
Sbjct: 642  MDLIPDFI-HRMHGGEFEYLHPLLEGVLEPTYGIMVYQEQVMQAAQYCAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ FI GA+K  I +  A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRKIFIEGAAKKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDN 833
            QTAW+K HYP EFLAA M+ EM N + +     D R+ N++++PPSVN     F  + + 
Sbjct: 761  QTAWLKAHYPAEFLAAVMSSEMQNTDNVVFLIDDCRKNNLEVLPPSVNMSIYQFHAIDEK 820

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L AIKGVG    + ++++     P+  L DFC R+D KK+N+R LE+L+ AGALD
Sbjct: 821  TIVYGLGAIKGVGEAAMQSVIDSRNQQGPYKDLFDFCHRIDLKKINKRTLEALIRAGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A    +NR     ++F   +     +   +     +  VR 
Sbjct: 881  CLGIERADLMAQLPEAVQAADQARQNRETGIMDLFGEVE--EIQRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y +GHP++VY+P L+        E   T RG     A +V+       R  
Sbjct: 939  KGEKDTLGLYLTGHPINVYRPELKSFVPSRLNELTPTRRGVTTVFAGLVIDVANFPNR-- 996

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
                 +T  +     E + 
Sbjct: 997  ---VMITLDDGTARVEVSC 1012


>gi|317182665|dbj|BAJ60449.1| DNA polymerase III subunit alpha [Helicobacter pylori F57]
          Length = 1211

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1078 (34%), Positives = 581/1078 (53%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +++  +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKEDKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     ++             A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDDQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +    KA  GL+ RL    +        Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLNFEDDASYFAYKAREGLKERL---VLVPKEKHDQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITSMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQAIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+ A +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMVAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E     
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERTKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|222823894|ref|YP_002575468.1| DNA polymerase III, alpha chain [Campylobacter lari RM2100]
 gi|222539116|gb|ACM64217.1| DNA polymerase III, alpha chain [Campylobacter lari RM2100]
          Length = 1197

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1061 (34%), Positives = 582/1061 (54%), Gaps = 52/1061 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L  +   + A    ++A+TD  N+F A++F +   A GI+PI
Sbjct: 4    FTHLHLHTEYSLLDGANKLKELAKTLKAQGATSVAMTDHGNMFGAIDFYKTMRAEGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D++               + L      GY+ L+ L S+ Y+        R
Sbjct: 64   IGLEAYLHNHDDI-----SDKSSRQRFHLCLFAKNEIGYKNLMYLSSQSYIHGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180
            I    L E  ++GLI  +    G I+                  + A++  L +KK+FGD
Sbjct: 118  INKKLL-EAHSDGLICSSACLQGEINWHLNTKNERNIKFGAKGYEGAKEAALWYKKVFGD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ + RH   D+   +  +++LA   ++ ++ATN++ +  +E   AH+V M +A    
Sbjct: 177  DFYLEIMRHGIDDQKFIDDSIIKLAKELDIKIIATNDTHYTFKERAAAHEVFMCIAMGVK 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +    R R    + Y+K   +M  +F+D+PEA+ENT EIA +C+  L++           
Sbjct: 237  LDDPGRLRHEVHEFYVKTPEQMSELFADIPEAIENTQEIANKCNLELKLGD-----PTPP 291

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY----------------HAQDYRQRLD 342
                 ++  +    N A    E       I   Y                  Q+Y+ RLD
Sbjct: 292  NFKFTREYAKKYSLNLAQEDQEFSFDNDDIVFEYLCKKGLEERLQFIDESKHQEYKDRLD 351

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+++I  MKFSGY LIV DFI  AK+ +IPVGPGRGS AGS+ +Y L ITD+DP+ ++L
Sbjct: 352  LEISIIKNMKFSGYMLIVHDFIAAAKEKDIPVGPGRGSAAGSLVSYCLKITDLDPIPYNL 411

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG E+VAQ+ITFG L AK  +RDV 
Sbjct: 412  LFERFLNPERVSMPDIDVDFCQDRRGEVIDYVIDKYGAEKVAQVITFGKLLAKGVIRDVA 471

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            R   M     D L KL+P +    +  +A   + +  E   + P   ++ + ++ LEGL 
Sbjct: 472  RVCDMSIPDADALAKLVPEELKITLE-KAYEQEPKIAEFVNSHPKGRQVWDFAKALEGLN 530

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            R+A  HAAG+VI +  L    P++R  ++D    VTQ++ +++E   LIKFDFLGLKTLT
Sbjct: 531  RNAGLHAAGVVISNEALWNKAPLFRQSKNDERHLVTQYSKEYLEDVDLIKFDFLGLKTLT 590

Query: 581  LLQKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  ++  + +R  K  +   I  +D + Y  + +  TLGIFQ+ES GM+     ++P+ 
Sbjct: 591  VIDNAIKLVKKRYGKDVIWEKIDMNDPKVYKTIQSGNTLGIFQIESGGMQSLNARLKPER 650

Query: 640  IEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             ED+IA+++LYRPGP+D+ +   + + K+G++        + P+L+ T GVI+YQEQVMQ
Sbjct: 651  FEDLIAVLALYRPGPLDSGMVDDFIDIKHGRKAATYAFDDLKPILENTYGVIVYQEQVMQ 710

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            I Q + G+SL  AD +RRAMGKK +E +D  K  ++ GA K G  +  A ++FEL+ KFA
Sbjct: 711  IVQKIGGFSLGGADNVRRAMGKKKREILDNLKAEYLEGAKKQGYDEKKADDLFELILKFA 770

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            +YGFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E  NV+K+ K+ ++ ++ NI+++
Sbjct: 771  EYGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEESNVDKVAKYIEEMKRMNIKLL 830

Query: 818  PPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            PPSVN    +F       G   I Y L AIK VG     +IM    ++ F   +DF S +
Sbjct: 831  PPSVNKAQREFSATKLEDGSEAIIYGLGAIKSVGIPAIENIMTIRKEEGFSDFDDFISSI 890

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D  K+N++ +E+L  +GA D FGY+R  L+ +L+ I + ++ + + + N   ++F  E+ 
Sbjct: 891  DPTKINKKTIENLAKSGAFDEFGYTRKCLVDNLELISETSRKIAEVKRNSTASLFGEEEI 950

Query: 933  TFSDKITLEKFS-VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                K+ L           +   E+ +LG Y SGHPLD +   +  +      +      
Sbjct: 951  AADIKVGLHDSKVEFELMEKLGYEKEILGIYVSGHPLDKFASQIEGIDYFKSMDFETLKG 1010

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               + +   +   +   ++ G R       +    ++   F
Sbjct: 1011 EGELLVVGKIEDFKSMMSKSGKRYAKAVVLDFYSSFDMIIF 1051


>gi|305665420|ref|YP_003861707.1| DNA polymerase III subunit alpha [Maribacter sp. HTCC2170]
 gi|88710175|gb|EAR02407.1| DNA polymerase III alpha subunit [Maribacter sp. HTCC2170]
          Length = 1478

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/1102 (30%), Positives = 539/1102 (48%), Gaps = 95/1102 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------------ 58
            F HL  H+ +S+L+  +S+ +++     +  PA+A+TD  N+  A  F            
Sbjct: 261  FAHLHNHTQFSILQSTISVADLVQATVKNNMPAVAMTDHANMMGAFHFVNGVINHNKGVI 320

Query: 59   ---------SQKAC-----------------AAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92
                      +                       I PI+GC+  +         +  KT 
Sbjct: 321  SRNEEKQKRYEATQNGTLEEGQEPLEELPTLEKEITPIVGCEFQVCED------HTDKTQ 374

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  IV+L     GY  L ++ S  + +D      RI    +++   E +I+LTG   
Sbjct: 375  KDNGYQIVMLAKNKNGYHNLAKMSSIAF-VDGKYYVPRIDKRIIEQY-KEDVIVLTGNLY 432

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPL 211
            G +         + AE  L+ +K+ FGD LY+ L RH   D  R +Q ++Q A  + + L
Sbjct: 433  GEVPSKVLNVGEKQAEDALIWWKETFGDDLYIELMRHNQEDETRVNQVLIQFAKKYNIKL 492

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIF 264
            +A+NN+ +  +E+  AHD+L+ V      +                ++Y K+  EM  +F
Sbjct: 493  IASNNTYYTEKENANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSSEEMKELF 552

Query: 265  SDLPEALENTVEIARRCSFI--------LQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             D+PEA+ N  E+  +                 P   +F E   D  ++ E   LR+   
Sbjct: 553  KDIPEAITNIQEVIDKVETYTLARDVLLPAFDIPKEFQFEEDRADGGKRGENKYLRHITY 612

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             G +               +  +RLDFEL VI    + GYFLIV DFI+ A+  N+ VGP
Sbjct: 613  EGAKK-------RYEEITPEIDERLDFELKVIENTGYPGYFLIVEDFIRAARDMNVSVGP 665

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGS AGS  AY L IT++DP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV +
Sbjct: 666  GRGSAAGSAVAYCLWITNLDPIKYDLLFERFLNPDRISMPDIDIDFDDEGRGRVMDYVID 725

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA------------ 484
            KYG  +VAQIIT+G++ AK+++RD  RAL +P    DR+ KLIPN               
Sbjct: 726  KYGSNQVAQIITYGTMAAKSSIRDTARALDLPLGDADRMAKLIPNMSKLKKIIGVDDAVL 785

Query: 485  -HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                + + +   +        +      L  +  LEG  R+   HA G++I    +++ V
Sbjct: 786  KSKFNSEELLKVNELLNIAEGEGLESETLNQAYVLEGSVRNTGIHACGVIITPDDITKFV 845

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP 602
            P+     S++  TQF+   +E AGL+K DFLGLKTLTL++ ++  +  + G+++D    P
Sbjct: 846  PVALAKDSEMYCTQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKIVKAKHGIELDPENFP 905

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD +TY L     T+G+FQ ES GM++ +  ++P    D+IA+ +LYRPGP++ I  + 
Sbjct: 906  LDDEKTYELFQRGETVGVFQYESPGMQKHMRSLKPTVFADLIAMNALYRPGPMEYIPSFI 965

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G E+IV      +  L ET G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK K
Sbjct: 966  ARKHGTEEIVYDLDACEEYLAETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQK 1025

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              +DK K +FI  AS  G +      I++    FA Y FNKSH+  YA I+YQTA+ K H
Sbjct: 1026 HVLDKMKPKFIEKASAKGHAVDKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYCKAH 1085

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAA 841
            YP E++AA ++  M++++++  F ++ ++  ++++ P VN     F V  +N + + + A
Sbjct: 1086 YPAEYMAAVLSNNMNDIKQVTFFMEECKRMGLEVLGPDVNESYYKFAVNQNNAVRFGMGA 1145

Query: 842  IKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY-SRM 899
            IKGVG      I+E    + P+ S+ D   R+D +  N++  ESL  AG  D FG   R 
Sbjct: 1146 IKGVGRGAVETIVENRKEEGPYKSVFDMAKRIDLRASNKKAFESLAVAGGFDSFGATHRA 1205

Query: 900  QLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            Q   +       L+ + K     ++N+ +   ++F         +  +       +  + 
Sbjct: 1206 QYFHTEGDGVTFLEKVIKSGSKYQENKNSSQMDMFGGMSEAQIPEPVVPPCEEWGTMEKL 1265

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTR 1010
              E+ V+G Y SGHPLD +K  +               +     I  A ++   Q +  +
Sbjct: 1266 RREKEVVGIYISGHPLDDFKSEINAFTNGTISCFTDLPKYVNREISFAGVITDVQHRIAK 1325

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
             G      T  +    +E   F
Sbjct: 1326 NGKGWALFTLEDYMDTFEFRIF 1347


>gi|317181143|dbj|BAJ58929.1| DNA polymerase III subunit alpha [Helicobacter pylori F32]
          Length = 1211

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1078 (34%), Positives = 583/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     ++             A+K    +
Sbjct: 115  FYYFPRINKKLLRE-HSKGIIASSACLQGEVNYHLNTHNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +    KA  GL+ RL    +        Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAQNEGLNFEDDASYFAYKAREGLKERL---VLVPKEKHDQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKSTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQAIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V          + +I + L AIKGVG    ++I+E     
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERTKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F    G   +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMDGGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|294055954|ref|YP_003549612.1| DNA polymerase III, alpha subunit [Coraliomargarita akajimensis DSM
            45221]
 gi|293615287|gb|ADE55442.1| DNA polymerase III, alpha subunit [Coraliomargarita akajimensis DSM
            45221]
          Length = 1243

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1096 (33%), Positives = 569/1096 (51%), Gaps = 73/1096 (6%)

Query: 5    LEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            + +    FVHL VH+ +SLL+G   ++ +  + A     A++ITD   L+    F ++A 
Sbjct: 1    MPEKDREFVHLHVHTDHSLLDGCSRVDRLCSRAAELGMKALSITDHGVLYGLTSFFKQAE 60

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
              GI+P++GC++ +  ++ L   N+ +    +   + LL     GYQ L ++VS+ +   
Sbjct: 61   KHGIKPLLGCEIYLVYEEKLAEVNELRAKQKSR-HMGLLARNFTGYQNLCKIVSKAHTQG 119

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
               ++ R  L  L    +EGLI  +G  +  I +    +  + A +    F  +FG   +
Sbjct: 120  -FYRNPRTDLETLAA-HSEGLIGFSGCLAAVIPQYLLEDKFEEAREAAAKFIDIFGKEFF 177

Query: 184  V-NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            +  L  H   ++      ++++A   +L +VATN+  ++++ D++ HD ++ +     V+
Sbjct: 178  IIELMDHGIPEQRKIIPGLLKIATEFDLKVVATNDVHYVNDADWQPHDSMLCIQTGAKVA 237

Query: 242  QKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             + R R      YLK+R EM   F ++PEA+ NT  IA  C   L       P +     
Sbjct: 238  DEKRMRYDAQQFYLKSREEMDLAFKEVPEAITNTSGIAEMCEVKLPFGVDHYPVYERPIE 297

Query: 301  DDIQKEEEN---------------------------------------ELRNKAVAGLEV 321
             D   + EN                                        L     AGL  
Sbjct: 298  IDSGSDHENFERVLDIYVEKKNEILVRDGKDPIELNAETRAKHKSNGLYLFELCKAGLNE 357

Query: 322  RLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
            R      A              Y ++L++EL +IA   F  YFLIV DFI WA++++IPV
Sbjct: 358  RYGTNYDACRADWDNSSEADKRYCEQLEYELAIIAGTGFVDYFLIVWDFINWAREHDIPV 417

Query: 375  GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
            GPGRGSGAG + AY L ITDIDPL F LLFER LN +R+S PDFD+DFC  RRD V+ YV
Sbjct: 418  GPGRGSGAGCLVAYVLKITDIDPLSFGLLFERMLNLERVSPPDFDVDFCMRRRDLVVNYV 477

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            ++KYG +RVA IITFG+  AK  +RD+ R   + +S+ ++L K+IP++    +   ++  
Sbjct: 478  RDKYGKDRVANIITFGTFGAKMVVRDLARVNDIEFSEANKLAKMIPDELNISLD-DSVKK 536

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
                ++    +P    ++E  + +EG+ R+   HA G++I D+ ++ L+P+    +    
Sbjct: 537  SPELQQELKVNPVAQTIIEQGRVIEGMVRNTGKHACGVIIADQDITNLIPVTL--QEGDL 594

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA--QRGVKVDLSLIPFDDHETYHLL 612
             TQ+     E  GL+K DFLGLKTLT++  +   +   +R    D+  +   D  TY LL
Sbjct: 595  TTQYPKGPSEDLGLLKMDFLGLKTLTVIDDAQTNVRNTRRMPDFDIEKVSLKDQPTYDLL 654

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
             +  T  +FQLES GM+Q    +     E+IIAL++LYRPGP+  I  +   K     + 
Sbjct: 655  NSGRTTAVFQLESGGMQQLCRQIGLSSFEEIIALIALYRPGPMQFIPQFIEGKKDPSTVQ 714

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
              HPL+  +++ET GV++YQEQVMQ AQ+++GY+L  AD+LRRAMGKKIKE MD QK+ F
Sbjct: 715  IPHPLLKDLVQETYGVLVYQEQVMQSAQIIAGYTLGGADILRRAMGKKIKEVMDAQKQVF 774

Query: 733  ISGAS-KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            I GA   N I +  A +IF LL KFA YGFNKSH+AAYA++SY+TA++K +YPVEF+AA 
Sbjct: 775  IDGAKATNNIDRKTAESIFALLEKFAQYGFNKSHSAAYAMLSYRTAFLKANYPVEFMAAV 834

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNRIYYSLAAIKGVGT 847
            +T E  N +K+  F ++    N+ ++ P VN     F       ++ I + +AAIKGVG 
Sbjct: 835  LTSEQGNADKLSNFLEECNAMNVPVLSPDVNASGATFTPIINGDESSIRFGMAAIKGVGE 894

Query: 848  TTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
              A  I+E    D P++S  DF +R   K +NRRV+E+L+  GA D  G+ R  LL  LD
Sbjct: 895  GAALVIIEERDKDGPYESFTDFITRSSDKAVNRRVIEALIKTGAFDSLGHDRAHLLHDLD 954

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT------LEKFSVENSSVRFENEQRVLG 960
                 A    K+R     ++F                    K      + + ++E+ +LG
Sbjct: 955  AELAEADSRRKDREAGQASLFDMLGNDAGIAEEDQTRKTPPKIPEMPMAEKLQHEKDLLG 1014

Query: 961  FYFSGHPLDVYKPI-LRKMGIKGYEESVATIRG-NNIRLAAMVVSKQQKKTRKGSR-IGW 1017
            FY SGHP+D Y  + +     +  ++           RL  +V + Q K TRK SR +  
Sbjct: 1015 FYISGHPMDAYAGLDMAIDSFQNADDLKRNFDDRQTYRLGGIVSNLQIKYTRKDSRQMAV 1074

Query: 1018 VTFSEPAKEYEANFFP 1033
               +   + YE   FP
Sbjct: 1075 FNVATRTQNYELIMFP 1090


>gi|288926043|ref|ZP_06419972.1| DNA polymerase III, alpha subunit [Prevotella buccae D17]
 gi|288337263|gb|EFC75620.1| DNA polymerase III, alpha subunit [Prevotella buccae D17]
          Length = 1240

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/1120 (31%), Positives = 541/1120 (48%), Gaps = 107/1120 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62
             FVHL VH+ YS+L+G   + N++ K   D    +A+TD   +F   EF+          
Sbjct: 3    DFVHLHVHTYYSILDGQSKIANLVKKAVDDGMRGMALTDHGVMFGIKEFADICAGLNKER 62

Query: 63   CAAG---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
               G    +PI GC++ +          +      +   +++L     GY+ LI+LVSR 
Sbjct: 63   KKEGKEPFKPIFGCEMYVARHRKEDKVKEHG--DNSGYHLIVLAKNYNGYKNLIKLVSRS 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            + +D      R     L++   E LI+ +   +G +           A +    + ++FG
Sbjct: 121  W-VDGYYYRPRTDREDLEKYH-EDLIVCSACIAGEVPAKILKGDIAGAREACEWYHRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     +++ A  + + L+ TN+  F  +E  E
Sbjct: 179  DDYYLELQRHEVTDPTVLANRETYPLQQRANKVLIEFAKEYGIKLICTNDCHFEDKETAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++    ++  +R R +   + K++ EM  IFSD+P+AL NT+EI  +  F   
Sbjct: 239  AHDHLLCLSTQADLNDPNRMRYSKQEWFKSKQEMNDIFSDIPDALTNTLEILDKVEFYSI 298

Query: 287  VHAPILPRFIEKECDDIQ------------------------------------------ 304
             H PI+P F   E    +                                          
Sbjct: 299  EHGPIMPFFPIPEDFGTEEQWRQKFSKEELYKEFTCDEKGENQLSPEDGQAVIDRLGGYD 358

Query: 305  -----KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 K E + L   A  G +             +++ ++ +DFEL+V+  M F GYFLI
Sbjct: 359  KIYRIKFEADYLGKLAYDGAKKLYGDPL------SEEVKEHIDFELHVMKTMGFPGYFLI 412

Query: 360  VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V DFI  A++   + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD 
Sbjct: 413  VQDFINAAREELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R  V+++V +KYGHE  A IIT+ S+  K +++DV R  ++P  + + LCK 
Sbjct: 473  DTDFDDDGRGRVLQWVMDKYGHENCAHIITYASMATKNSIKDVARVEKLPLERSNALCKA 532

Query: 479  IP---NDPAHPVSLQAIADDSRFREA-RLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP    D A      AI      +EA    D      ++ ++ LEG  R    HA G +I
Sbjct: 533  IPDRLPDGAKMNLTNAIKYTPELQEAAVSIDERERNTIKYAKMLEGTVRGTGIHACGFII 592

Query: 535  GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               P+S  VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ L+++   +
Sbjct: 593  CRNPISDWVPISTADDPDFPDKKTAVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVV 652

Query: 590  AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             Q     VDL  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +
Sbjct: 653  KQTTGDVVDLDNIPIDDELTYKLYQEGRTIGTFQFESAGMQKYLRELHPTVFEDLIAMNA 712

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RKN    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  
Sbjct: 713  LYRPGPMDYIPDFIKRKNDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E+D LR+AMGKK K  +D  K +FI    +NG    +   I+    KFA Y FNKSHA  
Sbjct: 773  ESDALRKAMGKKKKAIVDAMKPKFIKQGQENGHDPQVLEKIWSDWEKFASYAFNKSHATC 832

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ ++YQTA++K HYP EF+AA MT     + +I K  ++ +  NI  + P VN     F
Sbjct: 833  YSWVAYQTAYLKAHYPAEFMAALMTRRFSQITEITKLMEECKSMNISTLGPDVNESYSGF 892

Query: 829  KVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V     I + L+AIKG+GT  A  I+ E   + P+  + DF  RVD   +NR+  ESL 
Sbjct: 893  GVNRKGEIRFGLSAIKGMGTAAAEAIVSEREKNGPYKDIFDFAQRVDYSCVNRKAFESLA 952

Query: 887  FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
             +G  D FG  R Q +         LD++ +Y Q  + ++     ++F            
Sbjct: 953  LSGGFDGFGLQREQYMGVNSKGEVFLDSLVRYGQRYQLDQQQATNSLFGGMDMVEIATPP 1012

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------EESVATIRGN 993
            + K  V ++  +   E+ ++G Y S HPLD Y  IL+ +            +  A     
Sbjct: 1013 VPKGEVWSTIEKLNKERDLVGIYLSAHPLDEYTVILKSICNTKCMEVGRDSDKKALAERE 1072

Query: 994  NIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
             +    +V +  ++ + K     G+VT  +     E   F
Sbjct: 1073 ELTFGGIVTNVSERFSAKTNKPFGFVTIEDFDAPGELALF 1112


>gi|260174216|ref|ZP_05760628.1| DNA polymerase III alpha subunit [Bacteroides sp. D2]
 gi|315922485|ref|ZP_07918725.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696360|gb|EFS33195.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1268

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1142 (31%), Positives = 565/1142 (49%), Gaps = 124/1142 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC A I        +PIIGC++ +       
Sbjct: 63   KGEVKDLKKRIAGIEAGTIECEDKEAEIAACKAKIVEAENKLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L     GY  LI+LVS  +         R   S L++   EGL
Sbjct: 120  MDLKEGKPDQSGYHLIVLAKNETGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +         AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 178  IICSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLELQRHKATVPRANHECYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ A    + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKHLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK--------------- 298
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P F                  
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357

Query: 299  -----------ECDDIQKEEENELRNKAVAGLEV---------------RLAQGAIAKGY 332
                         + +  EE+ + + K + G +                      I    
Sbjct: 358  KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
              ++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS  AY L 
Sbjct: 418  LTEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRLCKL+P+           AIA     + A  + DP +
Sbjct: 538  MATKMAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEASSDPLL 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIE 564
               ++ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R ++VD+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRNIEVDVDAIDISDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +F+ G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFVEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKP 861
            K   + +   IQ + P VN   + F V  D  I + L A+KGVG    + IM E   + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGDIRFGLGAVKGVGEAAVQSIMEERRQNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              + ++     ++F  E         + +     +   R   E+ ++G Y S HPLD + 
Sbjct: 1018 RYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077

Query: 973  PILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +      +        G  I +  +V S ++  ++ G+  G     + +   E  
Sbjct: 1078 IVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137

Query: 1031 FF 1032
            F+
Sbjct: 1138 FW 1139


>gi|163732864|ref|ZP_02140309.1| DNA polymerase III, alpha subunit [Roseobacter litoralis Och 149]
 gi|161394224|gb|EDQ18548.1| DNA polymerase III, alpha subunit [Roseobacter litoralis Och 149]
          Length = 1138

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/1029 (46%), Positives = 652/1029 (63%), Gaps = 55/1029 (5%)

Query: 41   QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
             PA+A+TD NN+F+ALEFS     AG+QPI+GCQ+D+       +T Q          +V
Sbjct: 1    MPALALTDKNNMFAALEFSVAMSGAGVQPILGCQVDVAY-----VTAQPGEKERAPAPVV 55

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            LL     GY+ L+ L S +Y+ D+G    ++ LS L EI  +G+I LTGG  GP+ +   
Sbjct: 56   LLAQNETGYENLMRLNSCLYI-DKGGALPQVTLSEL-EINADGIICLTGGPDGPVGQLLQ 113

Query: 161  FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY------DRYRESQVVQLAYTHELPLVAT 214
                  A+  +   K  F DRLYV LQRH G       +R  E   V++AY  +LPLVAT
Sbjct: 114  LGQMPAAQALMDRLKAAFQDRLYVELQRHPGESGQPEKERLTERGFVEMAYAMDLPLVAT 173

Query: 215  NNSLFLSEEDYEAHDVLMAVAHSTV-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALEN 273
            N+  F   + YEAHD L+ +A       Q DR R+T  HY K++SEM+++F+DLPEA+EN
Sbjct: 174  NDVYFPKSDMYEAHDALICIAEGAYVDQQDDRRRLTNQHYFKSQSEMIALFADLPEAIEN 233

Query: 274  TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
            TVEIA+RC+F             +        +E  ELR +A AGL+ RL    I     
Sbjct: 234  TVEIAKRCAF--------QAYRRDPILPKFADDEVEELRKQAHAGLKARLE--VIPHATS 283

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
             +DY +RLDFEL +I  M F GYFLIVADFI+WAK+  IPVGPGRGSGAGS+ AYALT+T
Sbjct: 284  VEDYTKRLDFELGIIEGMGFPGYFLIVADFIKWAKEQGIPVGPGRGSGAGSLVAYALTVT 343

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            D+DPLR++LLFERFLNP+R+SMPDFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L 
Sbjct: 344  DLDPLRYNLLFERFLNPERVSMPDFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALL 403

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLL 512
            +KAA+RD+GR LQMPY QVDRL K+IP +   PVS++  +AD+ R RE    +  V RLL
Sbjct: 404  SKAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPVSIEKALADEPRLREEAKNEEVVARLL 463

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
               Q++EGL R+ASTHAAG+VIGDRPL  LVP+Y+D RS++P TQFNMKW+E+AGL+KFD
Sbjct: 464  NYGQQVEGLLRNASTHAAGVVIGDRPLDALVPLYQDPRSEMPATQFNMKWVEQAGLVKFD 523

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDL------------------SLIPFDDHETYHLLTT 614
            FLGLKTLT++Q +++ +   G  + +                  + IP DD  +Y L  +
Sbjct: 524  FLGLKTLTVIQNAVEQIMASGRPLHIAADGTELYAPAAGTENDINAIPLDDERSYKLYAS 583

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
              T+ +FQ+ESSGM  AL+ M+P CIEDI+ALV+LYRPGP++NI  Y   KNG   + SI
Sbjct: 584  AKTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPMENIPTYCEVKNGLRALESI 643

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            HPLID +L+ETQG+I+YQEQVMQIAQ+++GYSL  AD+LRRAMGKKI EEM K++ +F  
Sbjct: 644  HPLIDDILEETQGIIVYQEQVMQIAQVMAGYSLGGADLLRRAMGKKIAEEMAKERPKFEK 703

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            GA  NG+ K  A  +F+LL KFA+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  
Sbjct: 704  GAVANGVDKDKAREVFDLLEKFANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNC 763

Query: 795  EMDNVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
            ++   +K+  + ++ R +  +  +PP VN     FKV +  + Y+L A+K VG    + I
Sbjct: 764  DIHLTDKLAIYFEEVRKRLELPWVPPCVNRSAATFKVEEGALIYALGALKNVGVEAMKLI 823

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
             E   DKPF +L D   RVD K++ +R LE L  +GA D    +R ++  +LD +  Y+ 
Sbjct: 824  TEGRGDKPFATLFDLARRVDLKRVGKRPLEMLARSGAFDALDANRRRVFGALDALVNYSA 883

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
             + + + +   ++F  E G    +  L        + R   E + +GFY SGHPLD Y  
Sbjct: 884  AIHEQKASNQVSLFG-EAGDDLPEPRLHPVDDWQPAERLSEEFKAVGFYLSGHPLDDYMG 942

Query: 974  ILRKMG-------IKGYEESVATIRGN---NIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
             L++             +E    +      N RLA +V  +Q++K+ +G+R  +   S+P
Sbjct: 943  QLKRKWGNDRGVPFMTLDELTEKVTERGAMNARLAGIVAGRQERKSARGNRFAFAQMSDP 1002

Query: 1024 AKEYEANFF 1032
               YE   F
Sbjct: 1003 TGAYEVTLF 1011


>gi|32266769|ref|NP_860801.1| DNA polymerase III subunit alpha [Helicobacter hepaticus ATCC 51449]
 gi|32262821|gb|AAP77867.1| DNA-dependent DNA polymerase III [Helicobacter hepaticus ATCC 51449]
          Length = 1218

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1084 (36%), Positives = 596/1084 (54%), Gaps = 71/1084 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL +H+ YSLL+GA  +  +  +I      ++AITD  N+F AL+F       G+ P
Sbjct: 2    SFTHLHLHTEYSLLDGANKIKFLAKRIRELGMESVAITDHGNMFGALDFYVSMKEEGLNP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +   D L     G         + L      GY+ L+ L S+ ++ +      
Sbjct: 62   IIGMEAYLHNGDTL-----GDKTIKQRFHLCLFAKNEIGYKNLMYLSSQSFI-EGFYYYP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFG 179
            RI  + L+E  +EGL+  +    G I+                  +VA++  L +K +FG
Sbjct: 116  RINKALLRER-SEGLVCSSACLQGEINWQLNTSNQRNVRFGAKGYEVAKEVALEYKDIFG 174

Query: 180  DRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +  Y+ L RH   D+   + Q+++L    ++ ++ATN++ +  +ED  A +V M VA   
Sbjct: 175  EDFYLELMRHGINDQLFIDEQILKLGRELDIKVIATNDTHYSLQEDASAQEVAMCVAMGK 234

Query: 239  VVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP---- 293
              + KDR + +  + Y+K+  EM  +F D+PE LENT EIA++C   L +    +     
Sbjct: 235  TFNDKDRLKHSVKEFYVKSPQEMQKLFCDVPEVLENTQEIAQKCQLHLDLKNIEIKNKHT 294

Query: 294  -----RFIEKECDDIQKEEENELRN---------------------KAVAGLEVRLAQGA 327
                 +         +      L+                      K   GLE RL    
Sbjct: 295  GEILLKNTPATPPTFKHTTNYALKENLPQILNCSLESIDDAVYFAFKCRQGLEERLKHIP 354

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
                     Y++RL+ E+ VI+ MKF GY LIV DF+ +AK+NNIPVGPGRGS AGS+ A
Sbjct: 355  T---ESHPIYKKRLEHEIEVISSMKFPGYMLIVWDFVNFAKQNNIPVGPGRGSAAGSLVA 411

Query: 388  YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
            Y+L IT+IDPL++ LLFERFLNP+R+SMPD D+DFCQ RR E+I YV N YG   VAQ+I
Sbjct: 412  YSLKITNIDPLKYDLLFERFLNPERVSMPDIDMDFCQRRRGEMIEYVANTYGKFNVAQVI 471

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA----------IADDSR 497
            TFGSL AK  +RDV R L MPY+  D   KLIP +    ++                +SR
Sbjct: 472  TFGSLLAKGVIRDVARVLNMPYNDADAFAKLIPAELGITLTKHIGKDGKEKDGAWEKESR 531

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVT 556
             +E     P   ++ + +  LEGL R+A THAA IVI     L   VP+Y + + +   T
Sbjct: 532  IKELVEKSPLAKQVWDYALLLEGLKRNAGTHAAAIVIDSQEELWHKVPLYTNDKMNGVAT 591

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTK 615
            Q++M W+E   LIKFDFLGLKTLT++  +++ + +R   ++D S +  DD++ Y  + + 
Sbjct: 592  QYSMNWLEPVDLIKFDFLGLKTLTVIDDAINLIKKRYEKEIDFSTMEMDDYKVYETIQSG 651

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
             TLG+FQ+ES GM+   + ++P   ED++A++SLYRPGP+D I  +  RK+G  KI  + 
Sbjct: 652  NTLGLFQIESEGMQAIAKRLKPSNFEDVVAMISLYRPGPMDLIDDFVARKHGLVKIEYLI 711

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
              ++P+LK T GVI+YQEQVMQI Q + G+SL  AD++RRAMGKK  +EM + K+ F  G
Sbjct: 712  DALEPILKPTYGVIVYQEQVMQIVQTIGGFSLGGADLVRRAMGKKKLDEMLRLKKEFADG 771

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A K G ++  A +++E++ KFA YGFNKSHAAAY +I+YQTA++KT+Y  EF+AA +T E
Sbjct: 772  AQKQGYNRAKAEDLWEIIVKFAGYGFNKSHAAAYGMITYQTAYLKTYYEHEFMAAMLTSE 831

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----NRIYYSLAAIKGVGTTTAR 851
             + +E I K+  + +   I+I+PP VN    +F VG+     +I + L+AIKG+G     
Sbjct: 832  TNKIESIAKYIDEVKSLGIEIVPPHVNISENNFGVGEFDGVKKIIFGLSAIKGLGDAPIE 891

Query: 852  HIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
            +I+E    +  + SLEDF +RVD  KL +R LE L+ +G LD  GYSR  +L+ +D +  
Sbjct: 892  NIIEEREKNGAYKSLEDFVARVDFSKLTKRSLEPLIKSGGLDNLGYSRKSMLEYIDILCD 951

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
              +   K +   H ++F  ++   +  + +      +     + E   +G Y SGHPLD 
Sbjct: 952  KGREKSKAQEMIHNSLFGEDEVEINIYLPITHKGEYDIRTLLDYEYECMGIYISGHPLDD 1011

Query: 971  YKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYE 1028
            +K  L+ + GI    E       +   L   V+S +++ ++K     G + F +   + E
Sbjct: 1012 FKDKLKNIKGIIKSLELENLEFNSVCMLVGKVLSIKRRISKKSNKPFGSIDFLDYGGKIE 1071

Query: 1029 ANFF 1032
               F
Sbjct: 1072 IMVF 1075


>gi|215403402|ref|ZP_03415583.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 02_1987]
 gi|289745303|ref|ZP_06504681.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 02_1987]
 gi|289685831|gb|EFD53319.1| DNA polymerase III subunit alpha [Mycobacterium tuberculosis 02_1987]
          Length = 1184

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/1069 (30%), Positives = 526/1069 (49%), Gaps = 47/1069 (4%)

Query: 5    LEKSP---SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            +  S    SFVHL  H+ YS+L+GA  +  +L ++     PA+ +TD  N+F A EF   
Sbjct: 1    MSGSSAGSSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNS 60

Query: 62   ACAAGIQPIIGCQLDIDMQDNLK----------MTNQGKTPFPTVPSIVLLVSTAEGYQR 111
            A  AGI+PIIG +  I                       +   +   + ++   A G + 
Sbjct: 61   ATKAGIKPIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRN 120

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L +L S      Q  +  R+    + E   EG+I+ TG  SG +         + A +  
Sbjct: 121  LFKLSSHASFEGQLSKWSRMDAELIAE-HAEGIIITTGCPSGEVQTRLRLGQDREALEAA 179

Query: 172  LTFKKLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
              ++++ G D  ++ L  H    +R     ++++     +P +ATN+  +++ +    H+
Sbjct: 180  AKWREIVGPDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHE 239

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             L+ V     +S  +R +   D Y    +  +    D          +            
Sbjct: 240  ALLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADV 299

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                  +         ++ + LR++  AGL  R   G          YR+R  +E++VI 
Sbjct: 300  WTPRDRMPVFPVPDGHDQASWLRHEVDAGLRRRFPAG------PPDGYRERAAYEIDVIC 353

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
               F  YFLIVAD I +A+   I VGPGRGS AGS+ AYAL ITDIDP+   LLFERFLN
Sbjct: 354  SKGFPSYFLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLN 413

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QM 467
            P+R SMPD DIDF   RR E++RY  +K+GH+RVAQ+ITFG+++ KAAL+D  R    Q 
Sbjct: 414  PERTSMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQP 473

Query: 468  PYSQVDRLCKL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKL 518
             ++  DR+ K   P   A  +        S +   + +  R     DP V  + + ++ L
Sbjct: 474  GFAIADRITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGL 533

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+ 
Sbjct: 534  EGLIRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRN 593

Query: 579  LTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LT++  ++D +   RG+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQP
Sbjct: 594  LTIIGDAIDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQP 653

Query: 638  DCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIY 691
               ED++A+++LYRPGP+       Y +RKN ++ I  IHP ++      L ET G+I+Y
Sbjct: 654  TGFEDVVAVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVY 713

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQ+M+IAQ ++ YSL+ AD+LR+AMGKK +E ++K+ E F  G   NG S      +++
Sbjct: 714  QEQIMRIAQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWD 773

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  FADY FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+
Sbjct: 774  TILPFADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRK 833

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
              I ++PP VN   ++F      I Y L A++ VG      +++   D   F    D+ +
Sbjct: 834  LGITVLPPDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLN 893

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-H 929
            ++D    N++V ESL+ AGA D  G++R  L     +        +K       ++F  +
Sbjct: 894  KIDILACNKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSN 953

Query: 930  EKGTFSDKITL---EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            + GT +                  +   E+ +LG Y SGHPL+    +L           
Sbjct: 954  DDGTGTADPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAI 1013

Query: 987  V--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +         +R+  ++ S  ++  + G         +     E  FFP
Sbjct: 1014 LDGDVPNDAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1062


>gi|319944370|ref|ZP_08018644.1| DNA-directed DNA polymerase III alpha subunit [Lautropia mirabilis
            ATCC 51599]
 gi|319742331|gb|EFV94744.1| DNA-directed DNA polymerase III alpha subunit [Lautropia mirabilis
            ATCC 51599]
          Length = 1203

 Score =  706 bits (1823), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1047 (37%), Positives = 602/1047 (57%), Gaps = 37/1047 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL++ S YS+++  + L+  +    AD Q A+A++D +NLF  ++F ++A   G+Q
Sbjct: 43   PGFVHLRMRSEYSVVDSIVRLDEAVAAAVADGQMALALSDASNLFGWVKFYKQASGKGLQ 102

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI    + I   +N                ++L+ +   GY+RL EL+SR +L ++ K  
Sbjct: 103  PICAADVWITNAENRDRP----------YRLLLIAANNAGYRRLCELLSRAWLENEYKGH 152

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +   WL    T GLI L+G   G + +     +   A +    +   F D  Y+ +QR
Sbjct: 153  AELLPEWLTAETTGGLIALSGAGGGEVGQFLLAGNHARAVEAAQHWAAAFPDAFYLEVQR 212

Query: 189  HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-P 246
                +    ++   +LA   +LPLVAT+   FL EED+ AH+  + +A   V++   R  
Sbjct: 213  DGTPEAESCTRATARLAVELDLPLVATHPIQFLREEDFRAHEARVCIAEGEVLADPKRVR 272

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R  P  Y + R+EM+++F+DLP AL N+VEIARRC+  L++  P LP +   E   I   
Sbjct: 273  RFQPTQYFRTRAEMMALFADLPAALANSVEIARRCAVTLRLGNPQLPIYPTPEGVSI--- 329

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADF 363
             E  L ++A  GL  RL +        AQ   +Y  RL  E   I +M F GYFLIVADF
Sbjct: 330  -EEYLVHQAEDGLAKRLEKLYPDPEVRAQKAPEYEARLKRECETIIKMGFPGYFLIVADF 388

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I WAK+N +PVGPGRGSGAGS+ A++L ITD+DPL ++LLFERFLNP+R+SMPDFDIDFC
Sbjct: 389  IVWAKQNGVPVGPGRGSGAGSLVAFSLGITDLDPLPYALLFERFLNPERVSMPDFDIDFC 448

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QD R +VI YV+ KYG++ V+QI TFG++ +KA +RD GR L MPY+  D+L KLIP + 
Sbjct: 449  QDNRGKVIEYVRRKYGYDAVSQIATFGTMASKAVIRDAGRVLDMPYNFCDQLSKLIPIEQ 508

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A P+S  +A+  + +  E    +  V  L  +++ LE + R+   HA G++I    L+  
Sbjct: 509  AKPLSLDKALKAEPQLAERLANEEEVAELFALARPLEDMTRNIGMHAGGVLIAPGKLTDF 568

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GVKVD 597
             P+YR   +D  V+Q++   +E  GL+KFDFLGL+ LT++  ++ ++ +R        VD
Sbjct: 569  CPLYRAPGTDSVVSQYDKDDVEAVGLVKFDFLGLRNLTIIDLAVRYVNERRAREGQEPVD 628

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  + FDD   Y +L    T+ IFQ+ES GM++ L  +QPD  EDIIA+++LYRPGP+ +
Sbjct: 629  LDNLGFDDQAAYQILRDGNTVAIFQVESDGMKKLLRKLQPDRFEDIIAVLALYRPGPLGS 688

Query: 658  IVVYNNRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V +     + +  I   HP +   L+ T GVI+YQEQVMQI+Q+++GY+L  AD+LRR
Sbjct: 689  GMVDDFILRKRGEQAIDYFHPDLKDCLEPTYGVIVYQEQVMQISQIIAGYTLGGADLLRR 748

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM KQ++ F+ GA+  G    +A  +F+L+ KFA+YGFNKSH AAYAV++YQ
Sbjct: 749  AMGKKKAEEMAKQRKTFMEGAAAKGQDPDLASQLFDLMEKFAEYGFNKSHTAAYAVVTYQ 808

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834
            TAW+K HYP EF+AA+++ +MD+ +K++ F +DA+   +++ PP +N     F+      
Sbjct: 809  TAWLKAHYPAEFMAATLSSDMDDTDKVQIFVRDAQANQVEVQPPDINASAYRFEPAAPRA 868

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y L  +KGVG +   +++ A  A  PF  L DFC R+D K +NRR +E+LV AGA D 
Sbjct: 869  IRYGLGGVKGVGQSAIENVVAAREAGGPFIDLFDFCERIDRKLINRRTIEALVRAGAFDR 928

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF---SVENSSV 950
                R +LL ++    + A+   + +      +F       +D+    ++      +   
Sbjct: 929  LDPDRARLLANVPQAMEAAEQKAREQAAGQGGLFDDAFFGGTDEAPAREWLPAERWDDRQ 988

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----NNIRLAAMVVSKQQ 1006
            R   E+  LG++ +GH  D  +  +R+       +    +        + +A +V     
Sbjct: 989  RLLEEKSALGYFLTGHLFDACRDEVRRFVKTRIGDLEKIVGKHFGSTPVTVAGIVSGLST 1048

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              TR+G  +  V   + +   E   FP
Sbjct: 1049 AMTRRGK-MVRVMLDDGSGTEEIAVFP 1074


>gi|239978950|ref|ZP_04701474.1| DNA polymerase III subunit alpha [Streptomyces albus J1074]
 gi|291450830|ref|ZP_06590220.1| DNA polymerase III subunit alpha [Streptomyces albus J1074]
 gi|291353779|gb|EFE80681.1| DNA polymerase III subunit alpha [Streptomyces albus J1074]
          Length = 1182

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/1066 (31%), Positives = 529/1066 (49%), Gaps = 46/1066 (4%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
               P F HL VH+ YSLL+GA  L ++ D         IA++D  NL  A +F   A  A
Sbjct: 4    TSKPPFTHLHVHTQYSLLDGAARLKDMFDACNEMGMTHIAMSDHGNLHGAYDFFHSAEKA 63

Query: 66   GIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            G+ PIIG +  +  +                    +         +  + + G   L  L
Sbjct: 64   GVTPIIGIEAYVAPESRRTKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANSTGLHNLFRL 123

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S  Y     ++  R+    + +  +EGLI  TG  SG +         + A +    ++
Sbjct: 124  SSDAYSEGWLQKWPRMDKESISQW-SEGLIASTGCPSGEVQTRLRLGQEEEALRAAAEYQ 182

Query: 176  KLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            ++FG DR ++ L  H    +R     ++ +     +P + TN+S +    +  AHD L+ 
Sbjct: 183  EIFGKDRYFLELMDHGIEIERRVRQGLLDIGKKLGIPPLVTNDSHYTYSHESVAHDALLC 242

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            +     +S  DR R     Y    S       D  +A +         +  +        
Sbjct: 243  IQTGKNLSDPDRFRFDGTGYYLK-STEEMYAIDSSDAWQEGCRNTLLVAEQIDTTGMFEK 301

Query: 294  RFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            R +  + D      E    + +   G+  R   G        +D +++ ++E++VI +M 
Sbjct: 302  RDLMPKFDIPDGFTEVTWFQEEVRRGMARRFPAGV------PEDRQRQAEYEMDVIIQMG 355

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFL+VADFI WAK N I VGPGRGS AGS+ AYA+ ITD+DP+   L+FERFLNP+R
Sbjct: 356  FPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLNPER 415

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPD DIDF + RR EVIRYV  KYG ++VA I T+G ++AK A++D  R L  PY+  
Sbjct: 416  VSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAMG 475

Query: 473  DRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            DRL K +P D     +             ++    R     +P V ++++ ++ +EGL R
Sbjct: 476  DRLTKAMPADVLGKGIDLDGITNPKHPRYSEAGEIRGMYENEPDVKKVIDTAKGVEGLVR 535

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
                HAAG+++   P+    P++      + +TQ++    E  GL+K DFLGL+ LT++ 
Sbjct: 536  QMGVHAAGVIMSSEPIVDHAPLWTRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIMD 595

Query: 584  KSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             +     A +G+ +DL  +P DD +T+ LL    TLG+FQ +   MR  L  M+PD  ED
Sbjct: 596  DARKMVEANKGIDLDLLALPLDDPKTFELLCRGDTLGVFQFDGGPMRSLLRLMKPDNFED 655

Query: 643  IIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVM 696
            I A+ +LYRPGP+       Y  RKNG+++I  IHP ++  LKE    T G+I+YQEQV 
Sbjct: 656  ISAVSALYRPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEILGLTYGLIVYQEQVQ 715

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            + AQ+++GYSL EAD+LRR MGKK  EE+ K    F  GA K G S      ++++L  F
Sbjct: 716  KAAQIIAGYSLGEADILRRVMGKKKPEELAKNFVLFQEGAKKKGFSDEAIQALWDVLVPF 775

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A Y FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+  I++
Sbjct: 776  AGYAFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVKDDKDKSAVYLNECRRMKIKV 835

Query: 817  MPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDS 874
            +PP VN    +F    D+ I + L A++ VGT     I+ A      F S  D+  ++++
Sbjct: 836  LPPDVNESVHNFAAQSDDVILFGLEAVRNVGTNVVESIIRARKAKGKFSSFPDYLDKIEA 895

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            +  N+R  ESL+ AGA D  G++R  L    + +      V++       ++F       
Sbjct: 896  QACNKRTTESLIKAGAFDALGHTRKGLTAHYEPMIDNVVAVKRKEAEGQFDLFGGMGDDN 955

Query: 935  SDKITLE-----KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-- 987
            +D+              + +     E+ +LG Y S HPL   + +L      G  +    
Sbjct: 956  ADEPGFGLDIEFTDEEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGIGQLTGG 1015

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 1016 DFGDGAVVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 1061


>gi|329961868|ref|ZP_08299882.1| DNA polymerase III, alpha subunit [Bacteroides fluxus YIT 12057]
 gi|328531308|gb|EGF58152.1| DNA polymerase III, alpha subunit [Bacteroides fluxus YIT 12057]
          Length = 1273

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/1147 (31%), Positives = 567/1147 (49%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF----------- 58
             FVHL VH+ YSLL+G  S++ ++DK   D    IA+TD  N+F   EF           
Sbjct: 11   DFVHLHVHTQYSLLDGQASVSRLVDKAMKDGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 70

Query: 59   ---SQKACA--AGI-----------------------------QPIIGCQLDIDMQDNLK 84
                +      AGI                             +P+IGC++ +       
Sbjct: 71   KGEIKDLKKRIAGIESGEIECEDREAEIAGCRAKIAEAENKLFKPVIGCEMYVA---RRT 127

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVSR +         R   + L++   EGL
Sbjct: 128  MDKKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSRAWTKG-YYMRPRTDRNELEKYH-EGL 185

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +    +  + AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 186  IVCSACIGGEVPKKIINDRLEEAEEAVRWYKNLFGDDYYLELQRHKATVQRANHEAYPLQ 245

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +   +++++ A  + + ++ +N+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 246  QKANAKLLEYARKYNIKVICSNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 305

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K ++EM ++F D+PEAL NT+EI  +  +    HAPI+P F   E    ++E       
Sbjct: 306  MKTKAEMNALFEDVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEEFGTEEEYRAKYSE 365

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L   A  G +      
Sbjct: 366  KDLFDEFTQDENGKVVLDEEAAKAKIKRLGGYEKLYRIKLEADYLAKLAFDGAKRLYGDP 425

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                   + + ++RL FEL ++  M F GYFLIV DFI  A+    + VGPGRGS AGS 
Sbjct: 426  L------SDEVKERLVFELYIMKTMGFPGYFLIVQDFINAARTQLGVSVGPGRGSAAGSA 479

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V +KYG E+VA 
Sbjct: 480  VAYCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTDKYGQEKVAH 539

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL 503
            IIT+G++  K A++DV R  ++P S+ DRL KL+P+           AIA     + A  
Sbjct: 540  IITYGTMATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQAAEA 599

Query: 504  -ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558
              DP V   L+ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+
Sbjct: 600  SPDPLVRDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 659

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL++++++++ +   RG+K+D+  I   D  TY L     T
Sbjct: 660  EGSVIEDTGLIKMDFLGLKTLSIIKEAVENVRLHRGLKLDIDKISITDPATYKLYCDGRT 719

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+
Sbjct: 720  IGTFQFESAGMQKYLRELQPGTFEDLIAMNALYRPGPMDYIPDFIDRKWGRKPIEYDIPI 779

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI+G  
Sbjct: 780  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIAGGQ 839

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + 
Sbjct: 840  KNGHDPKVLEKIWADWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAAVMSRSLS 899

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA 856
            N+  I K   + +   I  + P VN   + F V  +  I + L A+KGVG    + IME 
Sbjct: 900  NITDITKLMDECKAMGINTLGPDVNESNLKFTVNKEGNIRFGLGAVKGVGEGAVQSIMEE 959

Query: 857  S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907
               + P+  + DF  RV+    N++ +E L  AG  D F    R Q           ++ 
Sbjct: 960  REKNGPYKGIFDFVQRVNLNACNKKNIECLALAGGFDSFPELKREQYFAVNSKNEVFIET 1019

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E         +      +   R   E+ ++G Y S HP
Sbjct: 1020 LVRYGNRYQADQAAAANSLFGGENVVDIATPEILPAERWSDLDRLNRERDLVGIYLSAHP 1079

Query: 968  LDVYKPILRKMGIKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y  +L  +      E      + G  I +  +V S ++  ++ G+  G     + + 
Sbjct: 1080 LDEYAVVLEHVCNTRMSEIEDKQALVGREITMGGIVTSVRRGISKNGNPYGIAKIEDYSG 1139

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1140 SAEFPFF 1146


>gi|226360211|ref|YP_002777989.1| DNA polymerase III subunit alpha [Rhodococcus opacus B4]
 gi|226238696|dbj|BAH49044.1| DNA polymerase III alpha subunit [Rhodococcus opacus B4]
          Length = 1178

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/1063 (29%), Positives = 523/1063 (49%), Gaps = 45/1063 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SFVHL  H+ YS+L+GA  +  + ++    +  A+ +TD  N++ A EF   A   GI
Sbjct: 2    ADSFVHLHNHTEYSMLDGAAKVGPLFEEAERLEMSAVGMTDHGNMYGASEFYNVAKKQGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +PIIG +  +  +                    +       + ++   A G + L +L S
Sbjct: 62   KPIIGIEAYVAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +  Q  +  R+    L     EG+I  TG  SG I         + A +    ++++
Sbjct: 122  LASIEGQLGKWARMD-EELIATHHEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI 180

Query: 178  FG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            +G D  ++ L  H    +R     +++++ T  +P +ATN+  +++++  E H+ L+ + 
Sbjct: 181  WGKDNFFLELMDHGLSIERRVREGLLEISKTLGIPPLATNDCHYVTKDAAENHEALLCIQ 240

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                +S   R +   D Y    +  +    D          +                  
Sbjct: 241  TGKTLSDPTRFKFDGDGYFLKSAAEMRALWDDQVPGACDNTLLIAERVQSYDDVWAHHDR 300

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +        + +   LR + + GL+ R   G        ++Y  R D+E+ VI  M F  
Sbjct: 301  MPIFPVPEGETQGTWLRKEVMRGLDRRFPSG------PPEEYLARADYEIGVILEMGFPA 354

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+V D I  A++  I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R+SM
Sbjct: 355  YFLVVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERVSM 414

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR- 474
            PD DIDF   RR E++RY  +K+G +RVAQ+ITFG+++ KAA++D  R            
Sbjct: 415  PDIDIDFDDRRRGEMVRYATDKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGFAIAD 474

Query: 475  --LCKLIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
                 L P   A  +S         +   +    R    ++P V ++ + ++ LEGL R+
Sbjct: 475  QITKALPPPIMAKDISVSGITDPNHERYKEAVEVRALIDSNPDVAKIYQTAKGLEGLIRN 534

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            A  HA  +++   PL   +P+++  +    +T ++    E  GL+K DFLGL+ LT++  
Sbjct: 535  AGVHACAVIMSSEPLMDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGD 594

Query: 585  SLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            ++D +   RG+++DL  +  DD  TY LL+   TLG+FQL+ S MR  L  MQP   EDI
Sbjct: 595  AIDNIKANRGIELDLDTLELDDTATYELLSRGDTLGVFQLDGSAMRDLLRRMQPTGFEDI 654

Query: 644  IALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQVMQ 697
            +A+++LYRPGP+       Y +RKNG++++  IHP ++  LK    +T G+I+YQEQ+MQ
Sbjct: 655  VAVLALYRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKEILADTYGLIVYQEQIMQ 714

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IAQ ++GYSL +AD+LRRAMGKK    +++    F  G   N  S+     +++ +  FA
Sbjct: 715  IAQKVAGYSLGQADILRRAMGKKKLSVLEEAYAGFREGMLANEFSEPAIKALWDTILPFA 774

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             Y FNKSHAA Y ++S+ T ++K +YP E++A  +T   D+ +K   +  D R+  I ++
Sbjct: 775  GYAFNKSHAAGYGLVSFWTGYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKMGITVL 834

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKK 876
            PP VN   V+F      I + + A++ VG      I++A  +K  F    D+ +++D+  
Sbjct: 835  PPDVNESEVNFASVGEDIRFGMGAVRNVGANVVGSIIKARKEKSKFVDFSDYLNKIDAAA 894

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             +++V ESL+ AG  D  G+ R  L+    +        +K       ++F  +    S 
Sbjct: 895  CSKKVTESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAIGQFDLFGGDDADESI 954

Query: 937  K----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TI 990
                 + + +    +S  R   E+ +LG Y SGHPL+  + +L           +     
Sbjct: 955  ASVFNVKIPE-EEWDSKHRLALEREMLGLYVSGHPLNGVEHVLSAQSDTAIPTILEGDIK 1013

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G  + +  ++ S  ++  + G         +     E  FFP
Sbjct: 1014 DGTQVTVGGILASVNRRINKNGLTWASAQLEDLTGGIEVLFFP 1056


>gi|257055090|ref|YP_003132922.1| DNA polymerase III subunit alpha [Saccharomonospora viridis DSM
            43017]
 gi|256584962|gb|ACU96095.1| DNA polymerase III, alpha subunit [Saccharomonospora viridis DSM
            43017]
          Length = 1193

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/1079 (31%), Positives = 537/1079 (49%), Gaps = 60/1079 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL VH+ YS+L+GA  +  + ++ +    PA+ +TD  N++ A +F Q+A  
Sbjct: 1    MSND-SFVHLHVHTEYSMLDGAAKIAPLFEEASRLGMPAVGMTDHGNMYGADDFYQQAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVLLVSTAE 107
            AGI+PIIG +  +  +                           +       + +L   A 
Sbjct: 60   AGIKPIIGIEAYVAPESRFHKKPVFWGNTGQRSTDEFGEGGDVSGGGAYTHMTMLAENAT 119

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            G + L  L S   + +   +  R+    + E   EG+I  TG  SG +           A
Sbjct: 120  GLRNLFTLSSLASM-EGYYRKPRMDRELIAEY-AEGIIATTGCPSGEVQTRLRLGQKDEA 177

Query: 168  EKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
             +    ++ +FG +  ++ L  H    +R     ++++     L  +ATN+S +++++  
Sbjct: 178  LQAAADYRDIFGAENFFLELMDHGLAIERSVREGLLEIGKKLGLQPLATNDSHYVTKDQA 237

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            E+H  L+ V     +S   R +   D Y    ++ +  + D          +        
Sbjct: 238  ESHSALLCVQSGKTLSDPTRFKFDGDGYYLKSAQEMREYWDTEVPGATDSTLLIAERVQS 297

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                      + K        EE+ L ++ + GL  R   G          Y +R +FEL
Sbjct: 298  YEEVYAHRDRMPKFEVPEGHTEESWLHHEVMRGLRWRFPDG------IPDGYVERAEFEL 351

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             VIA+  F  YFL+VAD I +A+   I VGPGRGS AGS+ AYAL IT++DP+  +LLFE
Sbjct: 352  EVIAQKGFPSYFLVVADLINYARSVGIRVGPGRGSAAGSLVAYALGITNLDPIPQNLLFE 411

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R SMPD DIDF   RR E++RY   KYG +RVAQ+ITFG+++ KAA++D  R  
Sbjct: 412  RFLNPERASMPDIDIDFDDRRRGEMVRYATEKYGADRVAQVITFGTIKTKAAIKDAARVH 471

Query: 466  --QMPYSQVDRLCKL-IPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEI 514
              Q  Y+  D++ K   P   A  +          +   + +  R     DP V  + E 
Sbjct: 472  FGQPGYAIADKISKALPPPIMAKDIPLSGIVDPEHERYPEAAEVRSLIENDPEVKTIFET 531

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            ++ LEGL R+A  HA  +++   PL   +P+++       +T ++    E  GL+K DFL
Sbjct: 532  ARGLEGLIRNAGVHACAVIMSSEPLLGTIPLWQRD-DGAIITGWDYPSCEAIGLLKMDFL 590

Query: 575  GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+ LT++  ++D +   RG ++DL  +  DD E Y LL    TLG+FQL+   MR  L 
Sbjct: 591  GLRNLTVIGDAIDNIRANRGEEIDLDRLGLDDPEAYKLLGRGDTLGVFQLDGGAMRDLLR 650

Query: 634  GMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQG 687
             MQP   EDIIA+++LYRPGP+       Y +RKNG+++I  IHP ++  LK+    T G
Sbjct: 651  RMQPTGFEDIIAVLALYRPGPMGMNAHNDYADRKNGRQQIKPIHPELEEPLKDILAETYG 710

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQ+MQIAQ ++GYS+  ADVLRRAMGKK KE ++K+ E F +G  +NG S     
Sbjct: 711  LIVYQEQIMQIAQKVAGYSMGRADVLRRAMGKKKKEVLEKEFEGFRAGMKENGFSDEAIQ 770

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             +++ +  FA Y FNKSHAA Y ++SY TA++K +YP E++AA +T   DN +K   +  
Sbjct: 771  ALWDTILPFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAALLTSVGDNKDKSAVYLS 830

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLE 866
            + R+  I+++PP VN     F    + I + L AI+ VG      I+        + S  
Sbjct: 831  ECRRLGIRVLPPDVNESGRRFAAVGDDIRFGLGAIRNVGANVVDSIIATREKKGKYTSFT 890

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF    +    N+RV+ESL+ AGA D FG++R+ +++  ++       +++       ++
Sbjct: 891  DFLDSSELVVCNKRVIESLIKAGAFDSFGHTRLSMMRVHEDAVDAVVPLKRQEAMGQFDL 950

Query: 927  FAHEKGTFSDKITLE-----------KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            F    G       ++                    +   E+ +LG Y S HPLD  + IL
Sbjct: 951  FQGFGGGGDGDTAVQTASSPLAHLKFDDEEYPRKQKLAYEREMLGLYVSAHPLDGAERIL 1010

Query: 976  RKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            RK   +     +A       I +A ++ S +++  +KG      T  +     E  FFP
Sbjct: 1011 RKHAKRPIAAILADPPKEGEIEIAGLITSLERRVNKKGEPWAICTVEDMDASLEVLFFP 1069


>gi|108563880|ref|YP_628196.1| DNA polymerase III subunit alpha [Helicobacter pylori HPAG1]
 gi|107837653|gb|ABF85522.1| DNA polymerase III alpha-subunit [Helicobacter pylori HPAG1]
          Length = 1211

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1078 (34%), Positives = 584/1078 (54%), Gaps = 60/1078 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++++ +F HL +H+ YSLL+GA  +  +  +I      ++++TD  N+F A++F      
Sbjct: 1    MKENKAFTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  I   DNL               + L     EGY+ L+ L S  YL + 
Sbjct: 61   EGIKPIIGMEAYIHNDDNL-----SSKETKQRFHLCLFAKNQEGYENLMFLSSMAYL-EG 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E  ++G+I  +    G ++     N+             A+K    +
Sbjct: 115  FYYFPRINKKLLKE-HSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEY 173

Query: 175  KKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +++F D  Y+ + RH   D+   + QV++++    L ++ATN++ +    D +A +V M 
Sbjct: 174  QEIFEDDFYLEIMRHGILDQRFIDEQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMC 233

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA    ++ K R + +  + Y+K+  EM  +F+D+PEALENT EIA +C   + +     
Sbjct: 234  VAMGKTLNDKGRLKHSVHEFYIKSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293

Query: 293  PRFIEKECDDIQ----------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                       +          +++ +   +KA  GL+ RL    +        Y++RL+
Sbjct: 294  NPPTPPSFKFTKAYAKNEGLNFEDDASYFAHKAREGLKERL---ILVPKEKHDQYKERLE 350

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             E+ VI  MKF GY LIV DFI++AK+  IPVGPGRGS AGS+ A+AL ITDIDPL++ L
Sbjct: 351  KEIEVITNMKFPGYMLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDL 410

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPD D DFCQ RR E+I Y+  KYG   VAQ+ITF  + AK  +RDV 
Sbjct: 411  LFERFLNPERVSMPDIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVA 470

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDRLLE 513
            R L MPY + D   KLIPN     +                + + +E   ++    ++ E
Sbjct: 471  RVLDMPYKEADDFAKLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWE 530

Query: 514  ISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             S  LE L R+A  HAA +V+   + L    P++   ++   VTQ++MK++E   LIKFD
Sbjct: 531  YSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFD 590

Query: 573  FLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + +  T+GIFQ+ES   +  
Sbjct: 591  FLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGL 650

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             + ++P   EDIIA+++L RPGP+++ +   + NRK+G E I      ++P+LK T G I
Sbjct: 651  NKRLRPSSFEDIIAIIALGRPGPMESGMVDDFVNRKHGIEPIAYAFKELEPILKPTYGTI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI Q + G+SL EAD++RRAMGKK  + M   K +F+ GA   G     A N+
Sbjct: 711  VYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANL 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  EF+AA +T E + +E + ++  + 
Sbjct: 771  WDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEV 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADK 860
            R   I++MPP +N+   DF V          + +I + L A+KGVG    ++I+E     
Sbjct: 831  RALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERVKG 890

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + SLEDF SRVD  KL ++ LE LV +G+LD  GY+R  +L +LD I    +  +K   
Sbjct: 891  DYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANE 950

Query: 921  NKH--ENIFAHEKGTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                  ++F   +    +++ L+       ++    E E   LG + SG+PLD +K  ++
Sbjct: 951  MMQGGNSLFGAMECGTKEQVILDMIDLGEHDAKTLLECEYETLGIHVSGNPLDEFKEEIK 1010

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 1011 GFKNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 1068


>gi|291485359|dbj|BAI86434.1| DNA polymerase III DnaE [Bacillus subtilis subsp. natto BEST195]
          Length = 1115

 Score =  706 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1026 (37%), Positives = 589/1026 (57%), Gaps = 37/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQVHS YSLL  A ++  ++ +       ++A+TD + ++ A++F +   A GI P
Sbjct: 2    SFVHLQVHSGYSLLNSAAAVEELVSEADRLGYASLALTDDHVMYGAIQFYKACKARGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    +   D+                +VLL  +  GYQ L+++ S +    +G    
Sbjct: 62   IIGLTASVFTDDSEL----------EAYPLVLLAKSNTGYQNLLKISSVLQSKSKGGLKP 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
                 WL     EG+I +T G  G I+        + A +  L F+ +FG    Y + Q 
Sbjct: 112  ----KWLHSY-REGIIAITPGEKGYIETLLEGGLFEQAAQASLEFQSIFGKGAFYFSYQP 166

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +G  +    Q+++L+    +P+ AT +  ++ +ED  A+  L A+     ++      +
Sbjct: 167  FKGN-QVLSEQILKLSEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLTDAPAEDL 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             PD  LK   EM +I+ + PEAL+ +VEIA +C   + +    LP F   +        +
Sbjct: 226  -PDLDLKPLEEMQNIYREHPEALQASVEIAEQCRVDVSLGQTRLPSFPTPDG----TSAD 280

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L +  + GL           G   + Y +RL +EL+VI RMKFS YFLIV DF++ A 
Sbjct: 281  DYLTDICMEGLR-------SRFGKPDERYLRRLQYELDVIKRMKFSDYFLIVWDFMKHAH 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ AY L ITD+DP++  LLFERFLNP+R+SMPD DIDF   RRD
Sbjct: 334  EKGIVTGPGRGSAAGSLVAYVLYITDVDPIKHHLLFERFLNPERVSMPDIDIDFPDTRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YVQ KYG   VAQIITFG+L AKAALRDVGR   +   + D+L KLIP+ P   + 
Sbjct: 394  EVIQYVQQKYGAMHVAQIITFGTLAAKAALRDVGRVFGVSPKEADQLAKLIPSRPGMTLD 453

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                    +  +       + ++  I++K+EGL RHASTHAAG+V+ + PL+ +VP+  +
Sbjct: 454  EAR-QQSPQLDKRLRESSLLQQVYSIARKIEGLPRHASTHAAGVVLSEEPLTDVVPLQ-E 511

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK-SLDFLAQRGVKVDLSLIPFDDHE 607
                + +TQ+ M  +E  GL+K DFLGL+ LTL++  +     +  +K+DLS I + D +
Sbjct: 512  GHEGIYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESITSMIEKEENIKIDLSSISYSDDK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL+   T GIFQLES+GMR  L+ ++P  +EDI+A+ +LYRPGP++NI ++ +RK+G
Sbjct: 572  TFSLLSKGDTTGIFQLESAGMRSVLKRLKPSGLEDIVAVNALYRPGPMENIPLFIDRKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +  +   H  +  +L++T GVI+YQEQ+M IA  ++G+SL EAD+LRRA+ KK KE +D+
Sbjct: 632  RAPVHYPHEDLRSILEDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKKKEILDR 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ G  K   S   A  +++L+ KFA+YGFN+SHA AY++I  Q A++K HYP+ F
Sbjct: 692  ERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHYPLYF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +   +T  + N +KI ++  +A+   I+I+PPSVN     F V +  + YSL AIK VG 
Sbjct: 752  MCGLLTSVIGNEDKISQYLYEAKGSGIRILPPSVNKSSFPFTVENGSVRYSLRAIKSVGV 811

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            +  + I +A  +KPF+ L DFC RV SK +NR++LE+L+F+GA+D FG +R  LL S+D 
Sbjct: 812  SAVKDIYKARKEKPFEDLFDFCFRVPSKSVNRKMLEALIFSGAMDEFGQNRATLLASIDV 871

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              ++A+    +  +    +F  E  +FS K    +            E+  LG YFS HP
Sbjct: 872  ALEHAELFAAD--DDQMGLFLDE--SFSIKPKYVETEELPLVDLLAFEKETLGIYFSNHP 927

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L  ++  L   G     ++   ++   + L  ++   +  +T+ G  + ++T S+   E 
Sbjct: 928  LSAFRKQLTAQGAVSILQAQRAVK-RQLSLGVLLSKIKTIRTKTGQNMAFLTLSDETGEM 986

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 987  EAVVFP 992


>gi|16079975|ref|NP_390801.1| DNA polymerase III DnaE [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310864|ref|ZP_03592711.1| DNA polymerase III DnaE [Bacillus subtilis subsp. subtilis str. 168]
 gi|221315190|ref|ZP_03596995.1| DNA polymerase III DnaE [Bacillus subtilis subsp. subtilis str. NCIB
            3610]
 gi|221320107|ref|ZP_03601401.1| DNA polymerase III DnaE [Bacillus subtilis subsp. subtilis str.
            JH642]
 gi|221324389|ref|ZP_03605683.1| DNA polymerase III DnaE [Bacillus subtilis subsp. subtilis str. SMY]
 gi|6166145|sp|O34623|DPO3A_BACSU RecName: Full=DNA polymerase III subunit alpha
 gi|2293260|gb|AAC00338.1| DNA-polymerase III alpha-chain [Bacillus subtilis]
 gi|2635388|emb|CAB14883.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp. subtilis
            str. 168]
          Length = 1115

 Score =  706 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1026 (37%), Positives = 589/1026 (57%), Gaps = 37/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQVHS YSLL  A ++  ++ +       ++A+TD + ++ A++F +   A GI P
Sbjct: 2    SFVHLQVHSGYSLLNSAAAVEELVSEADRLGYASLALTDDHVMYGAIQFYKACKARGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    +   D+                +VLL  +  GYQ L+++ S +    +G    
Sbjct: 62   IIGLTASVFTDDSEL----------EAYPLVLLAKSNTGYQNLLKISSVLQSKSKGGLKP 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
                 WL     EG+I +T G  G I+        + A +  L F+ +FG    Y + Q 
Sbjct: 112  ----KWLHSY-REGIIAITPGEKGYIETLLEGGLFEQAAQASLEFQSIFGKGAFYFSYQP 166

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +G  +    Q+++L+    +P+ AT +  ++ +ED  A+  L A+     ++      +
Sbjct: 167  FKGN-QVLSEQILKLSEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLTDAPAEDL 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             PD  LK   EM +I+ + PEAL+ +VEIA +C   + +    LP F   +        +
Sbjct: 226  -PDLDLKPLEEMQNIYREHPEALQASVEIAEQCRVDVSLGQTRLPSFPTPDG----TSAD 280

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L +  + GL           G   + Y +RL +EL+VI RMKFS YFLIV DF++ A 
Sbjct: 281  DYLTDICMEGLR-------SRFGKPDERYLRRLQYELDVIKRMKFSDYFLIVWDFMKHAH 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ AY L ITD+DP++  LLFERFLNP+R+SMPD DIDF   RRD
Sbjct: 334  EKGIVTGPGRGSAAGSLVAYVLYITDVDPIKHHLLFERFLNPERVSMPDIDIDFPDTRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YVQ KYG   VAQIITFG+L AKAALRDVGR   +   + D+L KLIP+ P   + 
Sbjct: 394  EVIQYVQQKYGAMHVAQIITFGTLAAKAALRDVGRVFGVSPKEADQLAKLIPSRPGMTLD 453

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                    +  +       + ++  I++K+EGL RHASTHAAG+V+ + PL+ +VP+  +
Sbjct: 454  EAR-QQSPQLDKRLRESSLLQQVYSIARKIEGLPRHASTHAAGVVLSEEPLTDVVPLQ-E 511

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK-SLDFLAQRGVKVDLSLIPFDDHE 607
                + +TQ+ M  +E  GL+K DFLGL+ LTL++  +     +  +K+DLS I + D +
Sbjct: 512  GHEGIYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESITSMIEKEENIKIDLSSISYSDDK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL+   T GIFQLES+GMR  L+ ++P  +EDI+A+ +LYRPGP++NI ++ +RK+G
Sbjct: 572  TFSLLSKGDTTGIFQLESAGMRSVLKRLKPSGLEDIVAVNALYRPGPMENIPLFIDRKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +  +   H  +  +L++T GVI+YQEQ+M IA  ++G+SL EAD+LRRA+ KK KE +D+
Sbjct: 632  RAPVHYPHEDLRSILEDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKKKEILDR 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ G  K   S   A  +++L+ KFA+YGFN+SHA AY++I  Q A++K HYP+ F
Sbjct: 692  ERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHYPLYF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +   +T  + N +KI ++  +A+   I+I+PPSVN     F V +  + YSL AIK VG 
Sbjct: 752  MCGLLTSVIGNEDKISQYLYEAKGSGIRILPPSVNKSSFPFTVENGSVRYSLRAIKSVGV 811

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            +  + I +A  +KPF+ L DFC RV SK +NR++LE+L+F+GA+D FG +R  LL S+D 
Sbjct: 812  SAVKDIYKARKEKPFEDLFDFCFRVPSKSVNRKMLEALIFSGAMDEFGQNRATLLASIDV 871

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              ++A+    +  +    +F  E  +FS K    +            E+  LG YFS HP
Sbjct: 872  ALEHAELFAAD--DDQMGLFLDE--SFSIKPKYVETEELPLVDLLAFEKETLGIYFSNHP 927

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L  ++  L   G     ++   ++   + L  ++   +  +T+ G  + ++T S+   E 
Sbjct: 928  LSAFRKQLTAQGAVSILQAQRAVK-RQLSLGVLLSKIKTIRTKTGQNMAFLTLSDETGEM 986

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 987  EAVVFP 992


>gi|57505669|ref|ZP_00371595.1| DNA polymerase III, alpha subunit [Campylobacter upsaliensis RM3195]
 gi|57015942|gb|EAL52730.1| DNA polymerase III, alpha subunit [Campylobacter upsaliensis RM3195]
          Length = 1197

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1060 (35%), Positives = 590/1060 (55%), Gaps = 49/1060 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YS+L+GA  L  +   +      ++A+TD  N+F A++F Q   + G++PI
Sbjct: 4    FTHLHLHTEYSMLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMRSHGLKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   D+L               + L      GY+ L+ L S+ Y+        R
Sbjct: 64   IGLEAYLHNMDDL-----SDKSSRQRFHLCLYAKNEMGYKNLMYLSSQSYIHGLYYY-PR 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180
            I    L++  +EGLI  +    G ++                  + A +  L +K++FGD
Sbjct: 118  INKKLLEK-HSEGLICSSACLQGEVNWHLNIHNERNVRFGAKGYEAAREAALWYKRVFGD 176

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y  + RH   D+   +  +++L+   ++ ++ATN++ +  +E  EAH+V M +     
Sbjct: 177  DFYFEIMRHGINDQRAIDDDIIRLSKELDIKIIATNDTHYTFKERAEAHEVFMCIGMGKR 236

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI-- 296
            ++  DR R +  + Y+K   +M  +F+D+PEA+ NT ++A +C+  L++  P  P F   
Sbjct: 237  LNDPDRMRHSVKEFYVKTSEQMSELFADIPEAISNTQDLANKCNLELKLGDPTPPNFKFT 296

Query: 297  ------------EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                        ++  +   + ++    +    GLE RL            +Y+ RL+ E
Sbjct: 297  REYAKEFNVALAQENVEFSFENDDLVFEHLCRKGLEERLK---FIDESKHDEYKARLETE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            + +I  MKFSGY LIV DFI+ AK  NIPVGPGRGS AGS+ AYAL ITDIDPL ++LLF
Sbjct: 354  IKIIKEMKFSGYMLIVHDFIKVAKDKNIPVGPGRGSAAGSLVAYALKITDIDPLPYNLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R+SMPD D+DFC+DRRDEVI YV +KYG ++VAQ+ TF  L AK  +RDV R 
Sbjct: 414  ERFLNPERVSMPDIDVDFCRDRRDEVINYVIDKYGSDKVAQVSTFNKLLAKGVIRDVARV 473

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L +    VD   KL+P +    +  +A   + + +E     P    L E ++ LEGL R+
Sbjct: 474  LDISLQDVDEFIKLVPEELKITLD-EAYEKEPKIKEFIEKHPKGKELWEYAKSLEGLNRN 532

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            A  HAAG+VI +  L    P++R  ++D    +TQ++   +E   LIKFDFLGLKTLTL+
Sbjct: 533  AGVHAAGLVISNESLWNKTPLFRQSKNDERHLITQYSKDHLEDVDLIKFDFLGLKTLTLI 592

Query: 583  QKSLDFLAQRGVKVD-LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++  + +R  K      I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593  HNAIKLIKERYNKDIVWESIDVNDSKVYKTIQSGNTLGIFQIESDGMQSLNARLKPENFE 652

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            D+IA+++LYRPGP+++ +   + +RK+G +KI+    ++  +L+ T GVI+YQEQVMQI 
Sbjct: 653  DLIAVLALYRPGPMESGMLDDFIDRKHGLKKIIYPFDVLKEVLEPTYGVIVYQEQVMQIV 712

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ G+SL  ADV+RRAMGKK  E+M K K+ F +GA K G ++  A +++EL+ KFA Y
Sbjct: 713  QIIGGFSLGGADVVRRAMGKKDPEKMAKLKDEFANGAEKQGYNRAKAEDLWELIVKFAGY 772

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAY +I++QTA++KT+YP EF+AA +T E + +E +  + ++ ++ NI+++PP
Sbjct: 773  GFNKSHSAAYGLITFQTAYLKTYYPSEFMAALLTSEQNKIENVAMYIEEMKKMNIKLLPP 832

Query: 820  SVNTPCVDFKVGD-----NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873
             +N    +F           I Y L AIK VG     +++E    +  F  L DF S++D
Sbjct: 833  RINKAISEFSAIKQEDGTEAIVYGLGAIKSVGGPAIENVLELRSKNGDFKDLHDFLSKID 892

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            + K+NRR LE  + AG+ D FG++R  L  +LD + + A+ + + R N   ++F  E+  
Sbjct: 893  TAKINRRTLEGFIKAGSFDDFGFTRKCLFNNLDTLAESARKMAEVRKNSASSLFGAEELN 952

Query: 934  FSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               KI +    S   +  +   E+ +LG Y SGHPLD +   +  +      +      G
Sbjct: 953  ADTKINIVMDNSEFEAMEKLGYEKEILGIYISGHPLDKFFEEINGIEYTKSIDFENLKGG 1012

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              I     V + +   ++ G R G +   +    +E   F
Sbjct: 1013 GEILSIGKVENFKSLMSKSGKRYGILEILDFYSSFETTIF 1052


>gi|295689601|ref|YP_003593294.1| DNA polymerase III subunit alpha [Caulobacter segnis ATCC 21756]
 gi|295431504|gb|ADG10676.1| DNA polymerase III, alpha subunit [Caulobacter segnis ATCC 21756]
          Length = 1143

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 486/1046 (46%), Positives = 673/1046 (64%), Gaps = 48/1046 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNI--------------LDKIAADQQPAIAITDTNNL 52
            ++  FVHL+V S+YSLLEGA+  + I               D+               NL
Sbjct: 5    EADGFVHLRVRSAYSLLEGAIKADQIGKLAAAAGMPAAGLADRA--------------NL 50

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F ALE+S  A  AG+QPIIGC L +     + +       +   P+++LL    +GY  L
Sbjct: 51   FGALEYSSYAKDAGVQPIIGCALPV-----VGIGGGPTERWARAPTVMLLAQNEQGYLNL 105

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             EL S  YL         +  + + E  ++GLI+L+GG+ GP+D  F    +  A   L 
Sbjct: 106  SELSSIAYLDSAELPEPVVPWAKVVEY-SDGLILLSGGTDGPVDALFAAGKAAEASAALA 164

Query: 173  TFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
               ++FGDR YV LQRH    +   E  +V  AY +++PLVATN+  F   + YEAHD L
Sbjct: 165  EMHRVFGDRFYVELQRHGLPKQAAAEPGLVNWAYENDVPLVATNDVYFAKSQFYEAHDAL 224

Query: 232  MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
            + +A    V Q +R RVT +H+ K  ++M  +F+DLPEA +NT++IARRC+         
Sbjct: 225  LCIADGAFVGQDERRRVTSEHWFKPPADMRKLFADLPEACDNTLDIARRCA----FMVHK 280

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
                +        + E  ELR++A  GL++RL    +      ++Y +RL+FEL++I +M
Sbjct: 281  RAPILPSFPTGDGRNEAEELRHQAREGLKMRL--DGLTLSAPEEEYWKRLEFELDIIEKM 338

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFLIV+DFI+W K + IPVGPGRGSGAGS+ A+ LTITD+DPLRF LLFERFLNP+
Sbjct: 339  GFPGYFLIVSDFIKWGKAHGIPVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPE 398

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPDFD+DFCQ+RR+EVI YVQ KYG +RVAQIITFGSLQA+A LRDVGR +Q+P   
Sbjct: 399  RVSMPDFDVDFCQERREEVISYVQEKYGRDRVAQIITFGSLQARAVLRDVGRVMQLPLGL 458

Query: 472  VDRLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            VDRLCK++PN+PA PV+  QAI  + R R+AR  D +V   L ++ +LEGL+R+ASTHAA
Sbjct: 459  VDRLCKMVPNNPAAPVTLAQAIDIEPRLRQARDEDANVANCLNVALQLEGLFRNASTHAA 518

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+VIGDRPL+QL P+Y+D RSDLP TQFNMKW+E AGL+KFDFLGLKTLT+L +++  L 
Sbjct: 519  GVVIGDRPLTQLTPLYKDPRSDLPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAVKHLK 578

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            +RG ++DL  +PFDD +TY LL +  T+G+FQLES GMR  L  M+   IE+I AL+SLY
Sbjct: 579  KRGFEIDLGKLPFDDTKTYELLASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLY 638

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+DNI  + + K G++ + ++HP ++ +LKET GVI+YQEQVMQIAQ+L+GYSL EA
Sbjct: 639  RPGPMDNIDTFVDCKFGRKPVDTLHPSLEGVLKETYGVIVYQEQVMQIAQILAGYSLGEA 698

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK KEEMD QK RF+SGA +  + +  + +IFEL+AKFA YGFNKSHAAAYA
Sbjct: 699  DLLRRAMGKKKKEEMDLQKIRFVSGAKEKNVPEEQSGSIFELVAKFAGYGFNKSHAAAYA 758

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ISYQTAW+K + PVEF AASM+L++ N +K+  F QDAR+F I +  P VN    DF+V
Sbjct: 759  FISYQTAWLKANTPVEFFAASMSLDLSNTDKLAVFHQDARRFGITVRAPDVNRSGADFEV 818

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +  + Y+L AI+ VG    +H++    +  PF  + DF  R+D +++N+R +E+L  AG
Sbjct: 819  ENGEVLYALGAIRNVGLDAMKHLVAVREEGGPFRDIFDFVERIDPRQVNKRAIENLARAG 878

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A D F  +R Q++ S D +  +AQ    +R      +F  + G  + +  L K    N  
Sbjct: 879  AFDSFHKNRAQIVASADVLIAHAQSCHADRQGGQGGLFGSDPG--AGRPRLAKTENWNQV 936

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-ATIRGNNI-RLAAMVVSKQQK 1007
               + E   +GFY +GHPL+    +LR+       E++     G    R+  MV  +Q++
Sbjct: 937  DLLDEELSAVGFYLTGHPLEDMVGMLRRRRTAMLAEAMVQAEAGMEAFRMCGMVRRRQER 996

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             ++ G +  +V+ S+P  EYE   FP
Sbjct: 997  ASQSGEKFAFVSLSDPTGEYEV-LFP 1021


>gi|282880114|ref|ZP_06288834.1| putative DNA polymerase III subunit alpha [Prevotella timonensis CRIS
            5C-B1]
 gi|281305987|gb|EFA98027.1| putative DNA polymerase III subunit alpha [Prevotella timonensis CRIS
            5C-B1]
          Length = 1235

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1110 (32%), Positives = 563/1110 (50%), Gaps = 91/1110 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS-------QKA 62
             +VHL VH+ YS+L+G   +  ++DK  AD    +AITD  N+F   EF        +K 
Sbjct: 3    DYVHLHVHTYYSILDGQSPIKRLVDKAVADGMQGMAITDHGNMFGIKEFFDYTNSVNKKL 62

Query: 63   CAAG---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
             A G    +PI GC++ +  +       +      +   +++L     GY+ LI+LVSR 
Sbjct: 63   KAEGKQPFKPIFGCEMYVARRTKQDKVKE--MGDMSGYHLIVLAKNYNGYKNLIKLVSRS 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            + +D      R   + L++   E LI+ +   +G + R       +   + +  +K++FG
Sbjct: 121  W-VDGYYMRPRTDRADLEKYH-EDLIVSSACLAGEVPRKILKGDMEGVRETIEWYKRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            +  Y+ +QRH   D             +     +++LA  + + ++ TN+  F+ +++ E
Sbjct: 179  EDYYLEIQRHEVKDPHIRANREAYPLQQRANKVILELAKEYGVKVICTNDVHFVDQDNAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++    +    R   +   + K R+EM  +F DLPE L NT+EI  +      
Sbjct: 239  AHDHLLCLSTGKDLDDPTRMLYSKQEWFKTRAEMNQVFDDLPEVLTNTLEILDKVEAYSI 298

Query: 287  VHAPILPRFIEKECDDIQKEEENEL--------------------------RNKAVAGLE 320
             H PI+P F   +    ++E E +                           R + + G E
Sbjct: 299  NHDPIMPNFPIPKSFGTEEEWEQKFSKEDLYREFTTDENGENPLSEADALKRIEHLGGYE 358

Query: 321  VRLAQGAIAKGYH---------------AQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    A                   +++   R+ FEL+V+  M F GYFLIV+DFI+
Sbjct: 359  KMYRIKFEADYLEQLTYEGARKIYGDSFSKEIDDRIRFELHVMKTMGFPGYFLIVSDFIR 418

Query: 366  WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             A++  ++ VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+S+PD D DF  
Sbjct: 419  AAREELSVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRISLPDIDTDFDD 478

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D R +V+++V +KYGHE  A IIT+GS+  K +++DV R  ++P ++ + LCK IP+   
Sbjct: 479  DGRGKVLKWVMDKYGHENCAHIITYGSMATKNSIKDVARVEKLPLNRSNALCKAIPDRLP 538

Query: 485  HPVSLQ---AIADDSRFREARLADPSVD-RLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              + +    AI      R+A  +    +   ++ ++ LEG  R    HA G +I   P+S
Sbjct: 539  DGLKMNLINAIKCTPELRDAEASTDIRESNTIKYAKMLEGTVRGTGIHACGFIICRDPIS 598

Query: 541  QLVPMYRDVRSDL-----PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
              VP+      D        TQ++   IE+ GLIK DFLGLKTL+ L++++  +   RG+
Sbjct: 599  DWVPISTADDPDFKDEKTNCTQYDGHVIEETGLIKMDFLGLKTLSELKEAVKNVKLTRGI 658

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +DL  IP DD  TY L     T+G FQ ESSGM+  L  + P    D+IA+ +LYRPGP
Sbjct: 659  DIDLDNIPIDDELTYQLYQEGRTIGTFQFESSGMQNYLRQLCPTKFGDLIAMNALYRPGP 718

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +DNI  +  RK G E I    P+++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR
Sbjct: 719  MDNIPSFIARKKGLEPISYPIPIMEKYLKDTYGITVYQEQVMLLSRLLANFTRGESDALR 778

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +AMGKK K  +D  K +FI G  KNG    I   I+    KFA Y FNKSHAA Y+ +++
Sbjct: 779  KAMGKKKKAIVDAMKPKFIEGGKKNGYDPKILDAIWADWEKFASYAFNKSHAACYSWVAF 838

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833
            QTA++K HYP EF+AA M+   D + ++ K   + +  NI  + P VN     F V    
Sbjct: 839  QTAYLKAHYPAEFMAAIMSRRKDQITEVSKLMDECKSMNIATLGPDVNESYEKFGVNHHG 898

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I + LAAIKG+G   A+ I++   A   +  + DF  RVD   +NR+  ESL  +G  D
Sbjct: 899  EIRFGLAAIKGMGNAAAKAIIDEREAHGTYKDIFDFVQRVDFTNVNRKAFESLALSGGFD 958

Query: 893  CFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
             FG  R     +       ++ + +Y Q  +  ++    ++F  E         + K  +
Sbjct: 959  SFGLPRESYFTANAKGELFVETLVRYGQLYQTKKSELEHSLFGGENAVEIATPAIPKPEL 1018

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIRLAAMVV 1002
             ++  R   E  ++G Y S HPLD Y  +L+ M      E        + +NI    M+ 
Sbjct: 1019 WSNIERLNKEHELVGIYLSAHPLDEYSIVLKTMCNTQCCELADRAELSKKSNIVFGGMIT 1078

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + K T+ G   G+VT  + +   E  FF
Sbjct: 1079 DVKDKFTKTGKPCGFVTIEDFSGSGELAFF 1108


>gi|189461926|ref|ZP_03010711.1| hypothetical protein BACCOP_02593 [Bacteroides coprocola DSM 17136]
 gi|189431320|gb|EDV00305.1| hypothetical protein BACCOP_02593 [Bacteroides coprocola DSM 17136]
          Length = 1265

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/1147 (31%), Positives = 569/1147 (49%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---------- 59
             FVHL VH+ YS+L+G  S+  ++DK  A+    IA+TD  ++F   EF           
Sbjct: 3    DFVHLHVHTQYSILDGQASIPRLVDKAIANGMRGIAVTDHGDMFGIKEFFNYVNKKNGGT 62

Query: 60   -----------------------------------QKACAAGIQPIIGCQLDIDMQDNLK 84
                                               + A     +PIIGC++ +      +
Sbjct: 63   NGEIKDLKKKIAALESGKAESENPEVDLAACREQLEAAKKKLFKPIIGCEMYVA---RRR 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            +T++      +   +V+L    +GY  LI+LVS+ +  +      R     L++   EGL
Sbjct: 120  LTDKEGKADQSGYHLVVLAKNLKGYHNLIKLVSKAWT-EGFYMRPRTDRVELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG-----------YD 193
            I+ +    G I R         AE+ +  +K LFGD  Y+ LQRH+              
Sbjct: 178  IVCSACLGGEIPRRITAGQFAEAEEAIQWYKNLFGDDFYLELQRHKATVPRANHETYKLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                 ++V+ +  + + LV TN+  F+ EE+ EAHD L+ ++    +   +R   T   +
Sbjct: 238  EVVNQKLVEYSKKYNIKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K R EM  +F+D+PEAL NT +I  +  F    +API+P F   E    ++E       
Sbjct: 298  MKTREEMNEVFADVPEALANTCDICDQVEFYSIDNAPIMPTFAIPEDFGTEEEYRKKFTE 357

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L   A  G   R  + 
Sbjct: 358  KDLFDEFTQDENGNVVMDEASAKAKIERLGGYEKLYRIKLEADYLAKLAYDGARRRYGEH 417

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                     + ++R+ FEL+++  M F GYFLIV DFI  A+   ++ VGPGRGS AGS 
Sbjct: 418  L------EDEVKERIKFELHIMKTMGFPGYFLIVQDFISAARNQLDVSVGPGRGSAAGSA 471

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R  V+ +V  KYG E+VA 
Sbjct: 472  VAYCLGITQIDPIKYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAH 531

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREA-R 502
            IIT+G++  K A++DV R  ++P S+ DRLCKL+P+           AIA     + A  
Sbjct: 532  IITYGTMATKLAIKDVARVQKLPLSESDRLCKLVPDKIPDKKLNLPNAIAYVPELQAAEV 591

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558
             +DP +   ++ ++ LEG  R+   HA G +I    ++  VP+      +    + VTQ+
Sbjct: 592  SSDPVLRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL++++++L+ + Q +G+ +++  IP DD  TY L +   T
Sbjct: 652  EGSVIEDTGLIKMDFLGLKTLSIIKEALENIKQSKGIILNIDEIPIDDPATYRLYSEGRT 711

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK G++ I    P+
Sbjct: 712  IGTFQFESAGMQKYLRELQPTTFEDLIAMNALYRPGPMDYIPDFIDRKQGRKPIEYDIPV 771

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  
Sbjct: 772  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGK 831

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    I   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA+M+  + 
Sbjct: 832  KNGHDPKILEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAATMSRNIS 891

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA 856
            N+ +I K   +++   + ++ P VN   + F V     I + L AIKGVG +  + I+  
Sbjct: 892  NITEITKLMDESKATGVNVLGPDVNESSLKFSVNRHGDIRFGLGAIKGVGESAVQSILTE 951

Query: 857  S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907
               + PF  + DF  RV+    NR+ +E+L  AGA D F    R             ++ 
Sbjct: 952  RQKNGPFKDIFDFVQRVNLSACNRKNIENLALAGAFDSFPNIHREDFFVKNAKDETFVEV 1011

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E         + + S  +   R   E+ ++G Y S HP
Sbjct: 1012 LVRYGNKYQMDKAAAANSLFGGEHEVEIATPEIVRASAWSDLERLNKERELVGIYLSAHP 1071

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD +  IL  +      +        N  + L  +V   ++  T+ G   G     + + 
Sbjct: 1072 LDEFSVILENVCNTHMAQLSDLTPLQNHDLTLGGIVTGVREGYTKTGKPFGVAKVEDYSG 1131

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1132 TAEFAFF 1138


>gi|294787965|ref|ZP_06753209.1| DNA polymerase III, alpha subunit [Simonsiella muelleri ATCC 29453]
 gi|294484258|gb|EFG31941.1| DNA polymerase III, alpha subunit [Simonsiella muelleri ATCC 29453]
          Length = 1151

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1038 (36%), Positives = 564/1038 (54%), Gaps = 30/1038 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++  ++ L++HS +S+++G + L  +    A    PA+ +TD  N F  L+F +    
Sbjct: 1    MAQAH-YIPLRIHSEFSIIDGTIRLKELAQTAAKFGLPALGLTDLMNTFGLLKFYKICRN 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G  + I                      +LL+   +GY RL EL+++ +    
Sbjct: 60   AGIKPIMGADVRIHNPHKP----------DNPYRALLLIRNEKGYTRLSELLTQAHTHQH 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              Q   +   WL E    GLI L+G   G +           A+     +   F +  Y+
Sbjct: 110  NHQPPELLEDWLAEGDNSGLICLSGAHMGEVGSQLMLGHDDAAQIAAQKYATWFPNAFYL 169

Query: 185  NLQRHRGYDRY--RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
             LQR      +    S  +++A   +LP+VAT+ + FL   D+ AHD  + +A+   ++ 
Sbjct: 170  ELQRLPEKPEWETYVSGSLKIAAKLDLPVVATHAAQFLQPNDFLAHDTRVCIANGWTLTD 229

Query: 243  KDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              RPR      Y     EM+S F+D+PEAL+N+VEIA+RC+  L +    LP+F   +  
Sbjct: 230  PKRPREFVASQYFIQPDEMLSRFADIPEALQNSVEIAKRCNLTLTLGKNFLPQFPTPDGM 289

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            ++  +    L N  +      L      +     +Y+ RLDFELN I +M F GYFLIV 
Sbjct: 290  NLD-DYIIHLSNLGLQERLDTLYPNETERAQRLPEYQARLDFELNTIIQMGFPGYFLIVQ 348

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK+N  PVGPGRGSGAGS+ AY+L ITD+DPL++SLLFERFLNP+R+SMPDFDID
Sbjct: 349  DFINWAKQNGCPVGPGRGSGAGSLVAYSLKITDLDPLKYSLLFERFLNPERVSMPDFDID 408

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FCQ  R  VI YV+ KYG + V+QI+TFG+L +K+ +RDVGR LQ+P+   D+L KL+P 
Sbjct: 409  FCQANRGRVIEYVREKYGKDAVSQIVTFGTLSSKSVIRDVGRVLQLPFGLCDKLSKLVPI 468

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                P+ L+            + +   + L++++ KLE L R+   HA G++I    +S 
Sbjct: 469  VQNKPLHLEKAIATEPEMMQIVKEEEAEELMDLAMKLEDLTRNLGMHAGGVLIAPGKISD 528

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR----GVKVD 597
               +Y+      PV+ ++   +E+ GL+KFDFLGL+ LT+++ + +F+ Q         D
Sbjct: 529  FCGVYQADEHASPVSMYDKGDVEEIGLVKFDFLGLRNLTIIEMAQNFIKQTTGKDIDVND 588

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +++ P DD   Y +     T  +FQ ESSGM++ L   +   +E+IIA VSLYRPGP+D 
Sbjct: 589  VNIAPLDDQAAYQIFRDANTTAVFQFESSGMKKMLSQARTTNLEEIIAFVSLYRPGPMDL 648

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +   +    K   +HPL+ P+L+ T G+++YQEQVMQ AQ++ GYSL  AD+LRRAM
Sbjct: 649  IPDFIA-RMKGAKFEYMHPLLAPVLEPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRRAM 707

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  EEM K ++ F  GA+K GI++  A  IF+ + KFA YGFNKSHAAAYA +S+QTA
Sbjct: 708  GKKKVEEMVKHRDIFAQGAAKQGINREKADEIFDYMEKFAGYGFNKSHAAAYAYVSFQTA 767

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ--FNIQIMPPSVNTPCVDFKVGDNR- 834
            W+K HYP EF+AA+M+ E+DN +++K F  DAR     I  +PP VN     F   + + 
Sbjct: 768  WLKAHYPAEFMAATMSSELDNTDQLKIFYDDARSKLNGITFLPPDVNESYYRFVPNNQKQ 827

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I+ A      F +L DFC RV  + +NRR +E+L+  GA D 
Sbjct: 828  IRYALGAIKGTGEAAVNAIVAARESGGKFKNLFDFCERVGKQHINRRTIEALIRGGAFDG 887

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL +++   + A   +K        +F        +   L +    + S +  
Sbjct: 888  LETNRALLLANVELALQNAD--QKANNANQGGLFDMLDDAIEELEMLPE-KAWSESQKLA 944

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E++ +GFY SGHP + ++  +R+       +           +A      +    + G 
Sbjct: 945  EEKQAIGFYLSGHPFEPHRAEVRQFSKTPLAQLRPAQHTQ--LIAGFATQIRTIMGKNGK 1002

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I   T  +     E   
Sbjct: 1003 FIAI-TLEDNTASQEVIV 1019


>gi|183982382|ref|YP_001850673.1| DNA polymerase III, alpha subunit, DnaE1 [Mycobacterium marinum M]
 gi|183175708|gb|ACC40818.1| DNA polymerase III, alpha subunit, DnaE1 [Mycobacterium marinum M]
          Length = 1180

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/1062 (29%), Positives = 514/1062 (48%), Gaps = 41/1062 (3%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              S SFVHL  H+ YS+L+GA  +  +L ++     PAI +TD  N+F A EF   A  A
Sbjct: 4    SSSRSFVHLHNHTEYSMLDGAAKITPMLAEVERLDMPAIGMTDHGNMFGASEFYNSATKA 63

Query: 66   GIQPIIGCQLDIDMQDNLK----------MTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            G++PIIG +  +                       +   +   + ++   A G + L +L
Sbjct: 64   GVKPIIGVEAYVAPGSRFDTRRITWGDPSQKGDDVSGSGSYTHLTMVAENATGLRNLFKL 123

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S      Q  +  R+    + E   EG+I  TG  SG +         + A +    ++
Sbjct: 124  SSLASFEGQLGKWSRMDAELVAE-HAEGIIATTGCPSGEVQTRLRLGHDREALESAAKWR 182

Query: 176  KLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            ++FG D  ++ L  H    +R     ++++    ++P +ATN+  +++ +    H+ L+ 
Sbjct: 183  EIFGADNYFLELMDHGLSIERRVREGLIEIGRKLDIPPLATNDCHYVTRDAAHNHEALLC 242

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            V     +S  +R +   D Y    +  +    D          +                
Sbjct: 243  VQTGKTLSDPNRFKFDGDGYYLKSAAEMRQLWDDDIPGACDSTLLIAERVQSYADVWTPR 302

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
              +         +  + L ++ +AGL  R   G        QDY  R ++E+ VI    F
Sbjct: 303  DRMPIFPVPEGHDPASWLHHEVMAGLRRRFPSGL------GQDYIDRAEYEIKVICDKGF 356

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFLIVAD I +A+  +I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R 
Sbjct: 357  PSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERP 416

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQ 471
            S PD DIDF   RR E++RY  +K+G +RVAQ+ITFG+++ KAAL+D  R    Q  ++ 
Sbjct: 417  SAPDIDIDFDDRRRGEMVRYAADKWGQDRVAQVITFGTIKTKAALKDSARIHYGQPGFAI 476

Query: 472  VDRLCKL-IPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DR+ K   P   A  +          +   + +  R     DP V  + + ++ LEGL 
Sbjct: 477  ADRITKALPPPIMAKDIPLSGITDPAHERFKEAAEVRGLIETDPDVRTIYQTARGLEGLI 536

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+ LT++
Sbjct: 537  RNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTII 596

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              +++ +   RG+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQP    
Sbjct: 597  GDAIENIKANRGIDLDLESLPLDDKPTYELLGRGETLGVFQLDGGPMRDLLRRMQPTEFN 656

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQV 695
            DI+A+++LYRPGP+       Y +RKN ++ +  IHP ++      L ET G+I+YQEQ+
Sbjct: 657  DIVAVLALYRPGPMGMNAHNDYADRKNNRQAVKPIHPELEEPLREILSETYGLIVYQEQI 716

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M IAQ ++ Y++ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++ +  
Sbjct: 717  MFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTILP 776

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  I 
Sbjct: 777  FAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGIT 836

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874
            ++PP VN   V+F      I + L A++ VG      ++        F    D+ +++D 
Sbjct: 837  VLPPDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIGTRSGKGKFTDFSDYLNKIDI 896

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
               N++V ESL+ AGA D  G+ R  L     +        +K       ++F       
Sbjct: 897  SACNKKVTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGSDSGA 956

Query: 935  SDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIR 991
                T++          +   E+ +LG Y SGHPL+    +L           +      
Sbjct: 957  DAVFTIKVPEDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVSN 1016

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +R+  ++ +  ++  + G         +     E  FFP
Sbjct: 1017 DAQVRVGGILAAVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1058


>gi|298247514|ref|ZP_06971319.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963]
 gi|297550173|gb|EFH84039.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963]
          Length = 1173

 Score =  705 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/1057 (30%), Positives = 551/1057 (52%), Gaps = 47/1057 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++    F HL VH+ YSLL+G   +  ++ +        +AITD   ++ ALEF +   A
Sbjct: 1    MQNFTDFAHLHVHTEYSLLDGFSRIKTLVKQAKELGMKHLAITDHGAMYGALEFYKACKA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              I+P++G +  +    N+K   +G+        ++LL     GY+ L+++++       
Sbjct: 61   NDIRPVLGVEAYLTEDMNVKAKKRGQR---DYTHLLLLAKNNTGYRNLMKMMTIANTEGM 117

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 RI  +   +   EG+I  +    G + +         A+  +  ++ + G    Y
Sbjct: 118  YANHARIDKNIFSQY-AEGIIATSSCLGGEVPQLLLEGKENEAKNIIRWYQDVLGRGNYY 176

Query: 184  VNLQRHRGYD--------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            + +Q H G++              +  L    ++P++ TN+  ++ + D  AH+VL+ V 
Sbjct: 177  LEIQEHHGHEKNGTPSPQDKLNKMLYGLHKELDVPMIVTNDLHYVQDTDAHAHEVLLCVQ 236

Query: 236  HSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
              + +S  +R    + +++L++  +M+ +F +L + L NTV +A +C      +   LP+
Sbjct: 237  TGSTLSDPNRFAFDSNEYFLRSPQQMLDLFPELHDGLLNTVRLAEQCEVDPLAYKAQLPK 296

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                         +  L  + + G+           G   +  +++LD+EL++I +  F 
Sbjct: 297  VDIP---PQYGTPDEFLYAQCLEGIRY-------RFGELTEPLKRQLDYELSIIVQKGFV 346

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFL+VAD+++WA++  I     RGS AGS+ A+ L IT++DPLR+ LLFERFLNP+R  
Sbjct: 347  PYFLVVADYVRWAREQGIR-CLARGSAAGSLVAFTLGITNVDPLRYQLLFERFLNPERDD 405

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPD D+DF  DRR+EVIRY+  KYGHE VAQ++TF S+ AK +++DV R++       D+
Sbjct: 406  MPDIDMDFPDDRREEVIRYLGEKYGHECVAQMVTFNSMAAKQSVKDVARSMGR-QDLGDK 464

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            + +LIP  P   +   ++ D     +    D     LL+++ KLEG  R    HAAG+++
Sbjct: 465  ISRLIPTGPKITL-QGSLNDVRDLNDLYQHDGEAKDLLDMALKLEGSVRSTGVHAAGVLV 523

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
             + PL   VP+ +        TQ+    +E+ GLIK+D LGL  LT+L  ++ F+ + RG
Sbjct: 524  ANEPLVNFVPLQKR--EGRISTQYEHSHLEEIGLIKYDILGLSNLTILDNAVKFIKESRG 581

Query: 594  VKVDLSLIPFDD----------HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
              ++L  +P D            + Y LL    T G+FQLES+ MR+ ++ ++P CIEDI
Sbjct: 582  EDINLEKLPLDPTGDPELDRKRQKAYELLAAGETTGVFQLESAKMREYIKMLKPTCIEDI 641

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
             A+V+LYRPGP+D+I  + + K+G++K+  + P +   L+E+ GVI+YQ+QV+ IA  L+
Sbjct: 642  TAMVALYRPGPMDSIPDFVDAKHGRKKVTYLDPRLSQWLEESYGVIVYQDQVLLIAVNLA 701

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G+S  + +  R+A+ KKI  E++  K  F+ G  KNG+ + +A  +FE +  F  YGFNK
Sbjct: 702  GFSWGKVNKFRKALSKKIMHEVEGYKGDFLKGCVKNGVKQEVAETLFEQILPFGGYGFNK 761

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            +HAA+YAV+S+ TA++K +Y  EF+AA+MT E  + +KI     + ++  ++++ P VN 
Sbjct: 762  AHAASYAVVSFYTAYLKANYTAEFMAATMTAEAADAKKIANAIAECKRMGVEVLGPDVNK 821

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVL 882
                F + +  I + L AIKG+G      I+ A A+  PF SL DFC+RVD+  + +  +
Sbjct: 822  SQKGFAIENGGIRFGLLAIKGIGDGPIDGIIRARAEGGPFKSLGDFCTRVDAHAVGKGAI 881

Query: 883  ESLVFAGALDCFGYS---RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KI 938
            E+L+  GA+D    S   R  LL S++   +Y +     +     ++F   +      + 
Sbjct: 882  ETLIKVGAMDSLMPSENQRHILLASVERAVQYGKSERSAKERGLVSLFGDLEEVGGSLEF 941

Query: 939  TLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK-GYEESVATIRGNNIR 996
            +L             E E+ ++G Y + HPL     I  + G      +    +    + 
Sbjct: 942  SLSTNAQEIPRKQLLEWERELIGVYIAKHPLAYLSDIFVERGATHTIGQVTEELDTKKVT 1001

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  M+   ++  T+KG  +  V   +         FP
Sbjct: 1002 VGGMIKEARRITTKKGDDMCVVQLEDMYGTLGITIFP 1038


>gi|258546181|ref|ZP_05706415.1| DNA polymerase III, alpha subunit [Cardiobacterium hominis ATCC
            15826]
 gi|258518606|gb|EEV87465.1| DNA polymerase III, alpha subunit [Cardiobacterium hominis ATCC
            15826]
          Length = 1177

 Score =  705 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1060 (38%), Positives = 600/1060 (56%), Gaps = 55/1060 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +HS +SL +  L +  I+D   +    AIA+TD NNL+ AL+F +KA AAGI+PI+
Sbjct: 5    THLHIHSEFSLSDSILRVGEIVDFAKSQGAEAIALTDRNNLYGALKFYKKARAAGIKPIL 64

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC L +   D                 ++LL    +G+  L ELVS  Y  DQ  Q V +
Sbjct: 65   GCDLTVRDSDGTDN------------QLILLAQNLKGFIHLCELVSFAYQYDQDHQGVAV 112

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             +        EGLI L+GG  G + R      +Q AEKR   ++ +F DR Y+ L RH  
Sbjct: 113  HIERFTPTQCEGLIALSGGIDGDLARFLRRRDAQGAEKRAAFWQGIFPDRYYLQLARHGQ 172

Query: 192  Y-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-T 249
              +               +  VATN + F + +DY+ H+V + +++  + +   RPR  T
Sbjct: 173  PGEAEYFDWCRDAGRKLGIAAVATNLACFPTADDYDVHEVRVCISNGWLRADDKRPRYFT 232

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              ++  + + M   F+D P+ L NT  +A RC+  L +    LP F   +  +I    E 
Sbjct: 233  QKYHFTSDAVMAERFADAPQILANTHAVAARCNLELTLGKNYLPDFPLPDGVNI----ET 288

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             L + A +GLE+RLAQ    +   A     Y +RL  EL VI +M F GYFLIVADFIQW
Sbjct: 289  FLIDSAKSGLELRLAQLFPDEAERAAKRAPYDERLAIELGVINQMGFPGYFLIVADFIQW 348

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK ++IPVGPGRGSGAGS+ AYAL ITD+DPL + L FERFLNP+R+SMPDFD+DFC +R
Sbjct: 349  AKDHDIPVGPGRGSGAGSLVAYALKITDLDPLAYDLFFERFLNPERVSMPDFDVDFCMER 408

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVI YV +KYG +RV+QI T G++ AKA LRDVGR L +PY  VD+L   +P      
Sbjct: 409  RDEVIEYVSHKYGAQRVSQIATHGTMAAKAVLRDVGRVLGVPYPVVDKLVATVPPVLGIT 468

Query: 487  VSL-----QAIADDSRFR-----EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            +           D    R     E    D  +  +++I  +LEGL R+   HA G+VI  
Sbjct: 469  LPDALGRSTKSQDKPELRSEAMQELYEKDEEMRDIIDIGLQLEGLARNVGKHAGGVVIAP 528

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---- 592
              L+    +Y +       TQF+   IE  GL+KFDFLGL+TLT++  +L  +  R    
Sbjct: 529  TKLTDFSALYSESAGAGIATQFDKDDIEAMGLVKFDFLGLRTLTVIDWALGHINARRTRE 588

Query: 593  -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                +D++ +P DD +TY LL +  T  +FQLESSGM++ +  ++PD  EDIIALV+L+R
Sbjct: 589  GQPPLDIATLPLDDPQTYALLQSTRTTAVFQLESSGMKELIRKLRPDTFEDIIALVALFR 648

Query: 652  PGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+ + +   + NRK+G  ++   HP ++ +L+ T GV++YQEQVMQ+AQ L+ YSL E
Sbjct: 649  PGPLGSGMVDDFINRKHGLAEVEYPHPDLEGILQTTYGVMVYQEQVMQVAQKLANYSLGE 708

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD LRRAMGKK  EEM + K+ F+S A + G+ +  A +IF+L+AKFA+YGFNKSH+AAY
Sbjct: 709  ADNLRRAMGKKKAEEMARNKDIFVSRAVERGVPEKQATDIFDLMAKFAEYGFNKSHSAAY 768

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQTAW+K HYP E +AA +T E++ ++KI +F  +AR   + ++PP +N     F 
Sbjct: 769  ALLSYQTAWLKAHYPAELMAAVLTSEIEKIDKIVRFINEARDMGLTVIPPCINRSQYTFT 828

Query: 830  VGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            V +   I Y L A+KGVG      ++E    +  + SLED C R+D KKLNR+ LE+L+ 
Sbjct: 829  VSERGEIIYGLGAVKGVGEAAINILLEERAKNGDYTSLEDLCRRLDLKKLNRKTLETLIR 888

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT---LEKFS 944
            AG+ D    +R  L  +++   K A+   +NR     ++F     +  D+     +    
Sbjct: 889  AGSFDNIEPNRGALFAAVEQAIKLAEQHHRNRHQGQGDMFGLFGDSSRDQPPSLIMNPEE 948

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKP-ILRKMGIKGYEESVA--------TIRGN-- 993
              +       E++ LG + S HP+D  +  +L+    +   +           T RG+  
Sbjct: 949  AWDLRQTLAEEKQTLGLFLSAHPIDEARDTLLQISRGRNLAQLQENMENWQRPTRRGDSI 1008

Query: 994  NIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
             + LA +V+  +   ++K G+ + ++T  + +   E   F
Sbjct: 1009 EVILAGVVIEARSMVSKKNGNPMIFLTIDDRSGRQEIGVF 1048


>gi|325962960|ref|YP_004240866.1| DNA-directed DNA polymerase III PolC [Arthrobacter phenanthrenivorans
            Sphe3]
 gi|323469047|gb|ADX72732.1| DNA-directed DNA polymerase III PolC [Arthrobacter phenanthrenivorans
            Sphe3]
          Length = 1185

 Score =  705 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1073 (34%), Positives = 547/1073 (50%), Gaps = 56/1073 (5%)

Query: 5    LEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +  S  SFVHL  H+ YS+L+GA  L  + D+      PA+A TD   LF A +F +KA 
Sbjct: 1    MTSSNDSFVHLHTHTEYSMLDGAARLGELFDETERLGMPALATTDHGYLFGAFDFWKKAT 60

Query: 64   AAGIQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
              GI+PIIG +  +                        +   +   + LL     G + L
Sbjct: 61   DKGIKPIIGVEAYVTPGTARGDKSRVRWGEEHQRKDDISGGGSYTHMTLLSYNNAGMRNL 120

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
                S   L     +  R+    L    +EGLI  TG  SG I         + A +   
Sbjct: 121  FRASSIASLDAVFGKWPRLDRELLNTY-SEGLIATTGCPSGEIQTRLRLGQYREALEAAA 179

Query: 173  TFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             F+ +FG +  +  L  H    +R     +++LA    LPLVATN+  +  E D +AH+ 
Sbjct: 180  EFRDIFGAENYFCELMDHGLDIERRVTGDLLRLAKDLNLPLVATNDLHYTHEHDAKAHEA 239

Query: 231  LMAVAHSTVVSQKDRP-------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
            L+A+   + + +                +YLK+  EM  +F D P+A +NT+ IA RC  
Sbjct: 240  LLAIQSGSTLLEPTYDNGGSRFAFSGSGYYLKSPQEMRELFRDHPDACDNTLLIAERCEV 299

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                 A  +PRF     +D    E + L  +   GLE R   G         + R + D+
Sbjct: 300  SFNTGANYMPRFPCPPGED----ETSWLVKEVAKGLEYRYPGGV------PDNVRAQADY 349

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL VI  M F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD+DPLR  L+
Sbjct: 350  ELGVITSMGFPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLDPLRHGLI 409

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNPDR+SMPDFD+DF   RR EVI YV  KYG ERVA I+T+G+++ K AL+D  R
Sbjct: 410  FERFLNPDRVSMPDFDVDFDDRRRPEVIDYVTRKYGDERVAMIVTYGTIKTKQALKDSSR 469

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR---------FREARLADPSVDRLLEI 514
             L  P+S  ++L K +P          A   +           FR+    DP   ++ E 
Sbjct: 470  VLGYPFSMGEQLTKALPPAVMAKDIPLADIQNPEAKRYGEAGDFRQLISTDPEAAKVFET 529

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            +  +EGL R    HAAG+++   P+  ++P+ R ++    +TQF+    E  GLIK DFL
Sbjct: 530  ALGIEGLKRQWGVHAAGVIMSSDPIIDVIPIMRRIQDGQVITQFDYPTCEGLGLIKMDFL 589

Query: 575  GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+ LT++  +L+ +   RG+ +DL  +  DD  +Y LL    TLG+FQL+   MR  L+
Sbjct: 590  GLRNLTIISDALENIKLNRGIDLDLENLELDDAPSYELLARGDTLGVFQLDGGPMRSLLK 649

Query: 634  GMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQG 687
             M+PD  EDI A+++LYRPGP+  +    Y  RKNG + ++ IHP ++  L E    T G
Sbjct: 650  LMKPDNFEDISAVLALYRPGPMGANAHTDYALRKNGIQPVIPIHPELEEPLSEILGGTYG 709

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQVM +AQ L+GYSL +AD+LRRAMGKK K E+DKQ   F  G   NG S     
Sbjct: 710  LIVYQEQVMAVAQKLAGYSLGQADILRRAMGKKKKSELDKQFAGFSQGMQDNGYSMEAVK 769

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++++L  F+DY FNK+H+AAY VISY TA++K HY  E++AA +T   D+ +K   +  
Sbjct: 770  TLWDILLPFSDYAFNKAHSAAYGVISYWTAYLKAHYAPEYMAALLTSVGDDKDKSAIYLN 829

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLE 866
            + R+  I ++PP VN   ++F    N I + + AI+ VG      ++ A   +  F S +
Sbjct: 830  ECRRMGITVLPPDVNESALNFTPVGNDIRFGMGAIRNVGVNVVEAMVAARESEGAFTSFK 889

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            D+  +V +   N+R +ESL+ +GA D  G+ R  L    +        +++N      ++
Sbjct: 890  DYLMKVPAVVCNKRTIESLIKSGAFDSLGHHRRALAMIHEEAIDSVITLKRNEAIGQFDL 949

Query: 927  FAH---EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            FA     +   S  I +          +   E+ +LG Y S HPL   + +L +      
Sbjct: 950  FAGFEEAESESSLSIEIPDLPEWEKKDKLSFERDMLGLYVSDHPLQGLEGLLSQHAEMSI 1009

Query: 984  EESVAT---IRGNNIRLAAMVVSK-QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +       G  I +A M+ S  ++     G+        +     E  FF
Sbjct: 1010 TSVLGEDGPQDGAIITIAGMITSLSRRIAKASGNAYARAEVEDLGGSMEVMFF 1062


>gi|221067306|ref|ZP_03543411.1| DNA polymerase III, alpha subunit [Comamonas testosteroni KF-1]
 gi|220712329|gb|EED67697.1| DNA polymerase III, alpha subunit [Comamonas testosteroni KF-1]
          Length = 1177

 Score =  705 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/1058 (37%), Positives = 589/1058 (55%), Gaps = 58/1058 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   +N ++   A D Q A+AITD NNLF  ++F ++    G++P+
Sbjct: 2    FVHLRLHTEFSVVDGTTRVNAMIKAAAEDGQVAMAITDFNNLFGGIKFYREGRGKGVKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++                    +++LV + +GY  + EL++R +  +  +   +
Sbjct: 62   LGAEIVLE-----------GLGDAPPSRVIVLVQSRQGYHNIAELLARGWTRNVVRDQAQ 110

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
                WLQE+G EGLI+L+G  +GP+  A      + A +       +F  R Y+ LQR  
Sbjct: 111  HKWEWLQELG-EGLIVLSGAQAGPVGIALTRGDEKGAAEIAQRLATMFPHRFYIELQRAG 169

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  D       V+LA    LP+VAT+   +   +DYEAH+  + +A   ++    R R  
Sbjct: 170  RPDDESHVLAAVKLASRLNLPVVATHPIQYAKPDDYEAHEARVCIAEGEILGNAKRVRKF 229

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T D Y K  +EM  +F D+P A+ENTVEIARRCS  L++  P LP F       +    +
Sbjct: 230  TRDQYFKTAAEMEQLFCDIPSAIENTVEIARRCSLTLELGNPQLPNFPVPAGMSM----D 285

Query: 309  NELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R+++  GLE     L   A  +      Y +RL+FEL  I +M F GYFLIV+DFI+
Sbjct: 286  EFFRHESYQGLEERLVHLYPDAAKRDAQRARYVERLEFELGTIMKMGFPGYFLIVSDFIK 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N  PVGPGRGSGAGS+ AY L +TD+DPL ++LLFERFLNP+R+SMPDFD+DFCQ 
Sbjct: 346  WAKANGCPVGPGRGSGAGSLVAYVLKVTDLDPLEYNLLFERFLNPERVSMPDFDVDFCQQ 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV+++YG + V+QI TFG++ A+AA+RDVGR L M Y+  D + KLIPN P  
Sbjct: 406  NRDRVIDYVKDRYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGL 465

Query: 486  PVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             V+                AI ++    E    +  V  L+E++Q LEG+ R+   HA G
Sbjct: 466  HVTLKYPPNPPKEGDKYTYAIKEEPILAERIEREEDVKTLIEMAQSLEGMTRNIGMHAGG 525

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI    L+   P+Y+   S   V  ++   +E  GL+KFDFLGL TLT+L+ + +F+ +
Sbjct: 526  VVIAPGRLADFCPLYQQPGSTSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIMK 585

Query: 592  RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R           IP DD+ TY L +   T  +FQ ES GM+Q L+  +P  +ED+IAL +
Sbjct: 586  RHKGQENFQFENIPLDDYPTYKLFSDGKTEAVFQFESRGMQQMLKEAKPSRLEDLIALNA 645

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RK+G+E +   HPL++ +L ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 646  LYRPGPMDLIPTFIARKHGQEVVEYPHPLVESVLAETYGIMVYQEQVMQTAQVLGGYSLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM K +  F  GA+KNG+S+  A  +F+L+ KFA YGFNKSHAAA
Sbjct: 706  GADLLRRAMGKKKVEEMVKHRGIFREGAAKNGLSEEKADEVFDLMEKFAGYGFNKSHAAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y++++Y T W+K HY  EF   +MT+EMDN +K+K   +DA +  I    P VN     F
Sbjct: 766  YSLLAYHTGWLKVHYTAEFYCGNMTVEMDNTDKLKVLYEDALKMGITFEMPDVNRGVHRF 825

Query: 829  K-VGDNRIYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKKL 877
            + V D  I Y L AIKG G      I+ A              PF SL DFC RVD  ++
Sbjct: 826  EPVTDKVIRYGLGAIKGTGQAAIEAIVAARNGEGTGPNGHETGPFKSLFDFCLRVDRSRI 885

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGT 933
            N+R +E+L+  GA D    +R  L+ +LD    +A     N       +F        G+
Sbjct: 886  NKRTVEALIKGGAFDSIDMNRASLMATLDTAFGFAATSIAN--ADQGGLFDMMGDDALGS 943

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
             + +  +          +   E+  +GFY +GH  D  +  +R+       E   +    
Sbjct: 944  STAEPPMADVLPWGVKEKLTLEKTAIGFYLTGHLFDEVEAEVRRFVRTPIGEMRDSREPQ 1003

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
               +A ++   +    ++G    + T  + +   EA+ 
Sbjct: 1004 --TMAGIIGGLRTINGQRGKLSIF-TLDDKSAVIEASV 1038


>gi|325860343|ref|ZP_08173463.1| DNA polymerase III, alpha subunit [Prevotella denticola CRIS 18C-A]
 gi|325482149|gb|EGC85162.1| DNA polymerase III, alpha subunit [Prevotella denticola CRIS 18C-A]
          Length = 1239

 Score =  705 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/1120 (30%), Positives = 533/1120 (47%), Gaps = 107/1120 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66
             +VHL VH+ YS+L+G   +  ++DK  AD    +A+TD   +F   EFS          
Sbjct: 3    DYVHLHVHTDYSVLDGQSKVTRLVDKAVADGMKGMAVTDHGVMFGIKEFSDYCAKVNKGR 62

Query: 67   -------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                    +P+ GC++ +  +              +   +++L     GY+ LI+LVS+ 
Sbjct: 63   KEKGEAPFKPVFGCEMYVARRTMHDKDKS--MHDNSGYHLIVLAKNYHGYKNLIKLVSKA 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            + +D      R     L++   E LI+ +   +G I      +  + A +    + ++FG
Sbjct: 121  W-VDGYYYKPRTDREQLEKYH-EDLIVCSACIAGEIPNKIIHDDIEGAREACEWYHRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     +++ A  + + ++ TN+  F  +E  E
Sbjct: 179  DDFYLELQRHEVKDPTLVANREAYPLQQKANKVLLRFAEEYGIKVICTNDCHFEDKETAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++ +  +    R R +   + K R EM  +FSD+PEAL NT+EI  +      
Sbjct: 239  AHDHLLCLSTNEDLDDPKRMRYSKQEWFKTRQEMNEVFSDIPEALTNTLEILDKVEIYSI 298

Query: 287  VHAPILPRFIEKECDDIQKE---------------------------------------- 306
             H PI+P F   E    ++E                                        
Sbjct: 299  DHGPIMPFFPIPEDFGTEEEWRKKFSEDDLYREFTTDENGEHPLPAEEGQKVIRRLGGYE 358

Query: 307  -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E + L   A  G       G +     + + +  + FEL+V+  M F GYFLI
Sbjct: 359  KIYRIKFEADYLAKLAYDGA------GKLYGDPLSDEVKSHIRFELHVMKTMGFPGYFLI 412

Query: 360  VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V DFI  A++   + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD 
Sbjct: 413  VQDFINAAREKLGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R +V+++V +KYGHE  A IIT+ ++  K ++RDV R  ++     + LCK 
Sbjct: 473  DTDFDDDGRGKVLQWVMDKYGHENCAHIITYSTMATKNSIRDVARVEKLSLDVSNGLCKA 532

Query: 479  IPNDPAHPVSLQ---AIADDSRFREA-RLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP+     + +    AI    R +EA    D      ++ ++ LEG  R    HA G +I
Sbjct: 533  IPDRLPDGMKMNLTNAIKCTPRLQEAEVSEDARERNTIKYAKMLEGTVRGTGIHACGFII 592

Query: 535  GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               P+   VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ L+++   +
Sbjct: 593  CRNPIDDWVPVSTASDPDFPEKKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVI 652

Query: 590  AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             Q     VDL  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +
Sbjct: 653  RQTTGDVVDLDNIPIDDELTYQLYQRGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNA 712

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RKN    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  
Sbjct: 713  LYRPGPMDYIPDFIKRKNDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E+D LR+AMGKK K  +D+ K +FI    +NG    +   I+    KFA Y FNKSHA  
Sbjct: 773  ESDALRKAMGKKKKAIVDQMKPKFIKQGQENGHDPQVLEKIWSDWEKFASYAFNKSHATC 832

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ ++YQTA++K HYP E++AA MT     + +I K  ++ +   I  + P +N   + F
Sbjct: 833  YSWVAYQTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKAMKITTLGPDINESQIGF 892

Query: 829  KVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V     I + LAAIKG+G + A  I+     +  +  + DF  RVD   +NR+  ESL 
Sbjct: 893  GVNSRGEIRFGLAAIKGMGASAAESIVREREKNGLYKDIYDFAERVDISNVNRKAFESLA 952

Query: 887  FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            ++G  D FG  R Q           LD I +Y Q  +  +  +  ++F            
Sbjct: 953  YSGGFDSFGLQREQYFAETGKGSLFLDTIVRYGQLYQAEKAQQQNSLFGGMDAVEVMHPV 1012

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN------ 993
              K     +  +   E+ ++G Y S HPLD Y  +L  M      +              
Sbjct: 1013 APKTEKWPAIEKLNKERELVGIYLSAHPLDEYSVVLDNMCNTHCSQIGRNADMEVLSKVD 1072

Query: 994  NIRLAAMVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFF 1032
             +    +V +  ++ + + G   G+VT  +     E   F
Sbjct: 1073 EVTFGGIVTAVSERFSQKTGKPFGFVTIEDFKGSGELALF 1112


>gi|88856521|ref|ZP_01131178.1| DNA polymerase III subunit alpha [marine actinobacterium PHSC20C1]
 gi|88814175|gb|EAR24040.1| DNA polymerase III subunit alpha [marine actinobacterium PHSC20C1]
          Length = 1174

 Score =  705 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1061 (33%), Positives = 547/1061 (51%), Gaps = 49/1061 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             + SFVHL VHS YS+L+GA  +  +LD       PAIAITD  N+F A +F + A A G
Sbjct: 6    NNDSFVHLHVHSEYSMLDGAARVGPLLDAAVEQGMPAIAITDHGNMFGAYDFWKSATARG 65

Query: 67   IQPIIGCQLDIDMQ-----------DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            I+PIIG +  I                   T            + LL    EG   L  +
Sbjct: 66   IKPIIGTEAYITPGTARGDKTRVRWGGSHQTRDDVGGSGAYTHMTLLSQNNEGMHNLFRM 125

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S+  + +      R+    L +  ++G+I  TG   G +           A +    F+
Sbjct: 126  SSKASI-EGFYFKPRMDRELLSQY-SKGIIATTGCVGGEVQTKLRLGLYDEARQAAADFQ 183

Query: 176  KLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             +FG +  +  +  H    +R     +++LA   ++PL+ATN+  +    D  AH  L+ 
Sbjct: 184  DIFGKENFFAEIMDHGIDIERRTILDLIKLAKELDMPLLATNDLHYTHSHDATAHAALLC 243

Query: 234  VAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            V  ++ +   +R +  + + YLK+ +EM S+F + PEA +NT+ IA RC    +      
Sbjct: 244  VQSASTLDDPNRFKFDSNEFYLKSAAEMRSLFREHPEACDNTLLIAERCEVSFE-----G 298

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
               + +      + E      +   G+  R           +  +  +  +E++VI +M 
Sbjct: 299  RDLMPRFPVPEGETEATWFEKEVAKGMNKRF------NNAPSDAHLAQAKYEVDVIQQMG 352

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFL+VADFI+WAK   I VGPGRGS AGS+ +YA+ IT++DPL   L+FERFLNP+R
Sbjct: 353  FPGYFLVVADFIEWAKAQGIRVGPGRGSAAGSMASYAVGITELDPLAHGLIFERFLNPER 412

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPD D+DF   RR EVIRYV  KYG +RVAQI+T+G+++AK AL+D  R L MPYS  
Sbjct: 413  VSMPDVDVDFDDRRRGEVIRYVTEKYGDDRVAQIVTYGTIKAKQALKDSARVLGMPYSVG 472

Query: 473  DRLCKLIPN-DPAHPVSLQ--------AIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            ++L K +P       +SL            + +  R     D    ++ + +  LEGL R
Sbjct: 473  EKLTKAMPPAIMGKDISLHDVRNKDAPRYKEAADIRGIVDTDAEAAKVFDTAVGLEGLKR 532

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
                HAAG+V+   PL  ++P+ R       +TQF+   +E  GLIK DFLGL+ LT+++
Sbjct: 533  QWGVHAAGVVLSAEPLLDVLPIMRREDDGAIITQFDQPPLESLGLIKMDFLGLRNLTVIE 592

Query: 584  KSLDFLAQRGVKVDLSLIPF--DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
             +L  +        +        D +TY LL    TLG+FQL+   MR  L+ ++P   E
Sbjct: 593  DALTMIKANTGSPLVIEDLDLDADQKTYDLLARGDTLGVFQLDGGPMRALLKQLKPTNFE 652

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPMLK----ETQGVIIYQEQV 695
            DI A+++LYRPGP+               E I +IHP ++  LK     T G+I+YQEQV
Sbjct: 653  DISAVIALYRPGPMGMNSHTKYALRKNGLEDIDAIHPELEEPLKEILGTTFGLIVYQEQV 712

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M +AQ ++G++L +ADVLRRAMGKK KEE+DKQ   F SG  +NG SK     ++E L  
Sbjct: 713  MSVAQKVAGFTLGQADVLRRAMGKKKKEELDKQFIGFESGMLENGFSKEAVKVLWETLMP 772

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FADY FNK+H+A Y V+SY TA++K +YP E++AA +T   D+ +K+  +  + R+  I+
Sbjct: 773  FADYAFNKAHSAGYGVLSYWTAYLKANYPAEYMAALLTSVGDSKDKLGMYLSECRRMGIK 832

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874
            ++ P VN   V+F      I + L A++ VG +    I+ A      F+S  D+  +V  
Sbjct: 833  VLAPDVNESTVNFTAVSGDIRFGLGAVRNVGASVVEQIVRARTEKGRFESFHDYLRKVSI 892

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            +  N+R +ESL+ +GA D  G +R  LL+  ++    A  +++N  N   ++F       
Sbjct: 893  QVANKRTVESLIKSGAFDSLGATRRGLLEIHEDACDSAVSLKRNEANGQVDLFGGIFDFD 952

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA---TIR 991
             D   + +    +   +   E+ +LG Y S HPL   +  L K       E ++      
Sbjct: 953  GDDDGVPERPEWSKRDKLAFEREMLGLYVSDHPLSGLELQLAKHQDATITEVLSGDVVAD 1012

Query: 992  GNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANF 1031
            G+++ +A +V S Q +  R  G++ G VT  +   E    F
Sbjct: 1013 GDHVSIAGLVTSVQHRVARNSGNQYGIVTVEDFGGEISVMF 1053


>gi|269216173|ref|ZP_06160027.1| DNA polymerase III, alpha subunit [Slackia exigua ATCC 700122]
 gi|269130432|gb|EEZ61510.1| DNA polymerase III, alpha subunit [Slackia exigua ATCC 700122]
          Length = 1194

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/1062 (30%), Positives = 533/1062 (50%), Gaps = 50/1062 (4%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +     FVHL  H+ YS+L+GA  + +++ + A    PA+AITD   +    E      
Sbjct: 22   AMP----FVHLHNHTEYSMLDGATHVKDMVRRAADLDMPAVAITDHGVMCGVPELCDACA 77

Query: 64   A------AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            A        ++PI GC++       +    +       +  +++L   +EGY  L+ LVS
Sbjct: 78   AVERETGKKVKPIYGCEIYFTEDPEVGTKKRS-----PLYHMIMLAKNSEGYHNLLHLVS 132

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
              ++ D      R  L  +++   +G++  +   +G I R         A +   TFK +
Sbjct: 133  ESHM-DNYYYKPRTTLDMIKK-HAKGIVATSACIAGIIPRRLRERDVAGAREWAQTFKDI 190

Query: 178  F-GDRLYVNLQRHRGYDRY------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            F     Y+ LQ                 Q+  LA+   L  +ATN+  +L+ ED +A D+
Sbjct: 191  FEPGDFYIELQDQGISTEEGFSQHELNVQLSNLAHDLGLETIATNDFHYLTREDAKAQDI 250

Query: 231  LMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
            ++ +   +    ++R R    + Y+K   EM     D PEA +NTV++A +CS  L+  +
Sbjct: 251  MLCIGTGSNYDDENRMRFANDEFYMKTEEEMREALRDFPEACDNTVKVAEKCSVELERDS 310

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI-----AKGYHAQDYRQRLDFE 344
             +               EE   R +   GL  R                  D  +R ++E
Sbjct: 311  ILPR-----FPLPEGYTEEMLFREECEKGLIHRYGNNGEITTMDELRAARPDVVERYEYE 365

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
              VI +  F  YFLIV ++I+WAK N I VGPGRGS AG++  YA+ ITD++PL   LLF
Sbjct: 366  AGVIIQQGFPAYFLIVQEYIRWAKDNGIGVGPGRGSAAGAICTYAMGITDLEPLDNGLLF 425

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFL+P+R+ MPD D+DF    R +VI +V++ YG + +A +ITFG LQAK A+RD  R 
Sbjct: 426  ERFLSPERVEMPDIDVDFDDQHRQDVIDHVRDFYGADHIAGVITFGKLQAKNAVRDAARV 485

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L  PY   D++CK I ++    +    + ++   ++    D     +++ ++ +EG  R 
Sbjct: 486  LGHPYGVGDKICKTIGDELGITLDDA-LENNVDLKKMYDDDADTRDIIDAARSIEGNIRG 544

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HA   +I   PL   VP+ RD +    +TQ++  +  + GL+K DFLGL+TL +L +
Sbjct: 545  EGVHACATIICRDPLVDHVPVKRDTKGGGMITQYDGHYTPELGLLKMDFLGLRTLGVLSR 604

Query: 585  SLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGI---FQLESSGMRQALEGMQPDCI 640
            +   +  R   ++    IP +D E + L+  +   G+   FQ+E +        + P   
Sbjct: 605  ACKNVKARHGLEIRPDEIPIEDAEAFRLMRGEMRWGMDGLFQVEGALYVSLFSRLPPRRF 664

Query: 641  EDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
             DI+A ++L RPGP+++ +   Y    NG  +I      + P+L+ET G ++YQEQ+MQI
Sbjct: 665  SDIVASIALNRPGPLESGMVDDYVKVANGTTEIHYYDDRLRPILEETYGTMVYQEQIMQI 724

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            +  +SG+S  +AD LR+AMGKK  + M + +  +  GA +NG S  IA  I+E   KFA 
Sbjct: 725  SMAMSGFSAGKADRLRKAMGKKKLDIMRQLQADWNEGAVENGYSLEIAKQIWEDAEKFAK 784

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            Y FNKSH+AAYA++  +TA++K HYP EF+AA ++  M N +++ K+        I ++P
Sbjct: 785  YAFNKSHSAAYALLVMRTAYLKAHYPYEFMAAVLSSYMGNADRLIKYISSCTHSGIPVLP 844

Query: 819  PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKL 877
            P VNT  ++F   +  I + LA ++G+G   A+ I++   A+ P+ SL DF +R+D+K  
Sbjct: 845  PDVNTSNLEFTPLEEGIRFGLAGVRGIGEAVAQSIIDEREANGPYSSLHDFVNRLDAKCY 904

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDN--IQKYAQWVEKNRTNKHENIFAH----EK 931
            NR+ LE+LV +GA D  GY+R QL+  +D+  + + A   +K+R     ++F        
Sbjct: 905  NRKTLEALVKSGAFDSTGYTRKQLMHFIDDTPLLESAAKRQKDRDAGQVSMFDLFADVPD 964

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI- 990
              F D +        +  +    E+ +L  Y S HPL  Y+  L  +      +      
Sbjct: 965  SGFDDDVPAPDGIEWDKRMLLAYEKEILKIYVSDHPLRPYERSLESVTKYHLGDLAEHKG 1024

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               N   A +V S   K TRKG+++      +     E   F
Sbjct: 1025 DIKNAVFAGLVASVTVKMTRKGTKMANFDLEDTTGHMECVCF 1066


>gi|254821473|ref|ZP_05226474.1| DNA polymerase III subunit alpha [Mycobacterium intracellulare ATCC
            13950]
          Length = 1177

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/1063 (30%), Positives = 520/1063 (48%), Gaps = 42/1063 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S SFVHL  H+ YS+L+GA  +  +L ++   Q PA+ +TD  N+F A EF   A  
Sbjct: 1    MNHS-SFVHLHNHTEYSMLDGAAKIAPMLAEVDRLQMPAVGMTDHGNMFGASEFYNAATK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AGI+PIIG +  I                       +   +   + ++  T  G + L +
Sbjct: 60   AGIKPIIGVEAYIAPASRFDTRRILWGDPGQKSDDVSGSGSYTHMTMVAETPTGLRNLFK 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   EG+I  TG  SG +         + A +    +
Sbjct: 120  LSSLASFEGQLGKWSRMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHDREALESAAKW 178

Query: 175  KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +++FG D  ++ L  H    ++     ++++     +P +ATN+  +++ +    H+ L+
Sbjct: 179  REIFGADNYFLELMDHGLSIEQRVRDGLLEIGRKLGIPPLATNDCHYVTRDAAHNHEALL 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             V     +S  +R +   D Y    +  +    D          +               
Sbjct: 239  CVQTGKTLSDPNRFKFDGDGYYLKSAAEMRRIWDDEVPGACDSTLLIAERVQPYDEVWAP 298

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
               +         ++ + L ++ +AGL  R   G        QDY  R ++E+ VI    
Sbjct: 299  RDRMPIFPVPEGHDQASWLHHEVMAGLARRFPSGV------GQDYIDRAEYEIKVICDKG 352

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F  YFLIVAD I +A+  +I VGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R
Sbjct: 353  FPSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPER 412

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYS 470
             S PD DIDF   RR E++RY  +K+G +RVAQ+ITFG+++ KAAL+D  R    Q  ++
Sbjct: 413  PSAPDIDIDFDDRRRGEMVRYAADKWGSDRVAQVITFGTIKTKAALKDSARIHYGQPGFA 472

Query: 471  QVDRLCKL-IPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
              DR+ K   P   A  +          +   + +  R     DP V  + + ++ LEGL
Sbjct: 473  IADRITKALPPPIMAKDIPLSGITDPAHERYKEAAEVRGLIETDPDVRTIYQTARGLEGL 532

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+ LT+
Sbjct: 533  IRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTI 592

Query: 582  LQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +LD +   RG+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQP   
Sbjct: 593  IGDALDNIKANRGIDLDLESVPLDDGPTYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEF 652

Query: 641  EDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQ 694
             DI+A+++LYRPGP+       Y +RKNG++ I  IHP ++      L ET G+I+YQEQ
Sbjct: 653  NDIVAVLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLREILSETYGLIVYQEQ 712

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            +M IAQ ++ Y++ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++ + 
Sbjct: 713  IMFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTIL 772

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             FA Y FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  I
Sbjct: 773  PFAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGI 832

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVD 873
             ++PP VN   V+F      I + L A++ VG      ++        F    D+ +++D
Sbjct: 833  TVLPPDVNESLVNFASVGTDIRFGLGAVRNVGANVVGSLISTRNGKGKFTDFSDYLNKID 892

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
                N++V ESL+ AGA D  G++R  L     +        +K       ++F  + G 
Sbjct: 893  IAACNKKVTESLIKAGAFDSLGHARKGLFLVHTDAVDSVLGTKKAEAIGQFDLFGGDDGC 952

Query: 934  FSDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATI 990
                 T++          +   E+ +LG Y SGHPL+    +L           +     
Sbjct: 953  TEAVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTQIPAILDGDVP 1012

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                +R+  ++ S  ++  + G         +     E  FFP
Sbjct: 1013 NETQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1055


>gi|28572411|ref|NP_789191.1| DNA polymerase III subunit alpha [Tropheryma whipplei TW08/27]
 gi|28410542|emb|CAD66928.1| DNA polymerase III alpha subunit [Tropheryma whipplei TW08/27]
          Length = 1164

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1060 (35%), Positives = 555/1060 (52%), Gaps = 49/1060 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +  Y+    SFVHL VH+ YS+L+GA    +++ K A D+ PAIAITD  N F A +F +
Sbjct: 1    MRDYM----SFVHLHVHTDYSMLDGAARTEDLMRKAAEDKMPAIAITDHGNTFGAFDFWK 56

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMT---------NQGKTPFPTVPSIVLLVSTAEGYQR 111
             A    I PIIG +  +    N K               +       + LL    EG   
Sbjct: 57   TAKTYDINPIIGMEAYLTPGTNRKEKVRKFFASGGPDDVSAGGAYTHLTLLSQNNEGMHN 116

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L +L S   + +      RI +  L +  + GLI  TG  SG I           A +  
Sbjct: 117  LFKLSSLASI-EGYYFKPRIDIELLNQY-SNGLIATTGCPSGEIQTRLRLGQYSEARQAA 174

Query: 172  LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
               + +FG +  Y  +  H    ++     +++LA    LPL+ATN+  +++ ED  +H 
Sbjct: 175  AQMRDIFGPENYYCEVMDHNLEIEKAVMPDLLRLAGDLGLPLLATNDLHYVNSEDSASHA 234

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVH 288
             L+ V   + ++  +R +   D +    S  + I F DLPEA +NT+ +A RC       
Sbjct: 235  ALLCVQSGSTINDPNRFKFDSDEFYLKSSSEMRILFEDLPEACDNTLLVAERCHINFDTQ 294

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
               +PRF   E +     E +   ++   G+  R   G       ++   ++ ++E+ V+
Sbjct: 295  RSFMPRFSVPEGE----TENSWFASEVKRGIASRYPNG------PSRRVIEQAEYEIRVV 344

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
                ++GYFLIVADFI WAK N I VGPGRGSGA S+ AYA+ ITD+DPL   L+FERFL
Sbjct: 345  QEAGYAGYFLIVADFINWAKLNGIRVGPGRGSGAASMAAYAMRITDLDPLEHGLIFERFL 404

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP R+SMPDFDIDF + RR EVI YV  KYG + VAQI+TF +++AK AL+D  R L  P
Sbjct: 405  NPARISMPDFDIDFDERRRGEVIDYVTKKYGSDHVAQIVTFATIKAKQALKDSARVLSYP 464

Query: 469  YSQVDRLCKLIPN-DPAHPVSLQAIADD--------SRFREARLADPSVDRLLEISQKLE 519
            YS  +RL K +P       + L+AI D         S  R+   +D  + ++   ++ LE
Sbjct: 465  YSFGERLTKAMPPAVMGREIPLRAIFDTTHSRHREASEVRQMIESDYEMQQIFNTAKGLE 524

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
             L R  + HAAG+++ D P+  ++P+ +       VTQF+    E  GL+K DFLGL+ L
Sbjct: 525  NLKRQWAVHAAGVIMSDAPIIDIIPIMKRESDGHIVTQFDYASCESLGLVKMDFLGLRNL 584

Query: 580  TLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  +L  + Q +  KVDL  +P DD E Y LL    TLG+FQL+S  +RQ LE MQPD
Sbjct: 585  TIIDDALANIRQNKNTKVDLENLPLDDPEVYKLLRRADTLGVFQLDSGPIRQLLELMQPD 644

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQ 692
              +DI A ++LYRPGP+   +   Y  RKN K++I  IHP +      +L  T G+I+YQ
Sbjct: 645  SFDDISAAIALYRPGPMGARSHTNYALRKNRKQEIDHIHPELTKDLSVLLSSTYGLIVYQ 704

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV+ IAQ L+G++L EADVLR AMGKK K+E+D+Q  +F +G  K G S      ++ +
Sbjct: 705  EQVIGIAQKLAGFTLEEADVLRWAMGKKKKDELDRQYNKFANGMRKAGYSDGATEALWNV 764

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  F+DY FNK+HA AY +ISY TA++K HYP E++AA +T    + +K+  + Q+ R  
Sbjct: 765  LLPFSDYAFNKAHATAYGLISYWTAYLKAHYPTEYMAALLTSVETSRDKLGLYLQECRHM 824

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
             I+++ P +N     F      I + L AIK VG      I+E   D PF SL DF  R+
Sbjct: 825  CIKVLLPDINVSRSGFTPSGENILFGLGAIKNVGANLIDDILEVREDGPFVSLIDFVQRM 884

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
                LNRR + SL+ AGA D    +R  L+    ++ +  Q   +       ++      
Sbjct: 885  PHSVLNRRSVMSLIQAGAFDSIHPNRRSLMDIHRSVLENCQANARRSD---VSLLDGLLD 941

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
             +    +       N+  R + E+ +LG Y S HPLD  +  L K       E ++    
Sbjct: 942  EYEG-FSPPDIPDWNNRERLKYEREMLGMYVSSHPLDGLEDSLLKFRDCSIAECISRKPQ 1000

Query: 993  NNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANF 1031
            + IR+A ++ S + K  R+ G R       + + E +   
Sbjct: 1001 DVIRVAGLITSVEHKVARRTGMRYAHAILEDTSGEIQIML 1040


>gi|284035464|ref|YP_003385394.1| DNA polymerase III subunit alpha [Spirosoma linguale DSM 74]
 gi|283814757|gb|ADB36595.1| DNA polymerase III, alpha subunit [Spirosoma linguale DSM 74]
          Length = 1205

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/1097 (31%), Positives = 542/1097 (49%), Gaps = 95/1097 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKI---------AADQQPAIAITDTNNLFSALEFSQK 61
            F HL  H+ YSLL+G         +           AD  PA+AITD  N+F   EF  +
Sbjct: 3    FSHLHCHTQYSLLDG---------QADIKKLIKKAKADNMPAVAITDHGNMFGVFEFVAE 53

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A   GI+PI+GC+  +    + K     K         +LL   A+GY+ L +L S  Y+
Sbjct: 54   ASKQGIKPIVGCEFYVVEDHHKKQF--TKEQKDVRYHQLLLAKNAQGYKNLAKLCSLGYM 111

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                 +  R+    + +   EGLI  T      + +       +  E     +   FG+ 
Sbjct: 112  EGLYGKYPRVTKELIDQY-KEGLIASTCCIGASVPKTILKKGEEAGEIEFKWWLDRFGED 170

Query: 182  LYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             YV LQRH   D+      +++ A  + + ++A+N+S ++ ++D+ AHD+L+ V  +   
Sbjct: 171  YYVELQRHEIPDQIKANEVLIKFARKYNVKIIASNDSHYVDQDDWVAHDILLCVNTNEKQ 230

Query: 241  SQKDRP---------------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            S                      +   Y KN  EM ++F DLPEA++NT EI  +   + 
Sbjct: 231  STPSMKDFSDDDVMPKNTRFAFFSDQFYFKNTQEMTTLFKDLPEAIDNTNEIVGKVETLK 290

Query: 286  QVHAPILPRFIEK----ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
                 +LP F       +  D    +   LR+    G + R               ++RL
Sbjct: 291  LKRDIMLPNFPIPKEFQQHTDDVLNQWEYLRHLTYEGAKERYVDILP-------HIQERL 343

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            DFEL  I  M F+GYFLIVADFI+  +   + +GPGRGS AGS  AY   IT+IDP+++ 
Sbjct: 344  DFELFTIRTMGFAGYFLIVADFIKAGRDLGVMIGPGRGSAAGSAVAYCTGITNIDPIKYD 403

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNPDR SMPD D DF  + R +VI YV  KYG  +VAQI+T+G++ +K++++DV
Sbjct: 404  LLFERFLNPDRKSMPDIDTDFDDEGRQKVIDYVVQKYGKAQVAQIVTYGTMASKSSIKDV 463

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS------------------------- 496
             R + +P    + + KL+P+ P + ++L+ I +D                          
Sbjct: 464  ARVMDLPLQDANAVVKLVPDKPTYNMTLKRIFEDPIDGPGGLSSVIQPDEVENVKRMRAL 523

Query: 497  -------RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                         +    V  +L+ ++KLEG  R+   HAAGI+I    LS +VP+    
Sbjct: 524  EAGDKSAAQAMRIVDFEKVSAVLKQARKLEGTVRNTGLHAAGIIIAPSDLSDIVPVSTSK 583

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-LSLIPFDDHET 608
             ++L +TQ+  K IE AG+IK DFLGL+ LT++++ L  + Q       +  IP DD ET
Sbjct: 584  DTNLIITQYEGKVIEDAGVIKMDFLGLRNLTIIKECLRLIKQNHDVTIAIDDIPLDDEET 643

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            Y L     T  +FQ ES GM++ ++ ++PD   D+IA+ +LYRPGPI  I  Y NRK+G+
Sbjct: 644  YKLFQRGETNAVFQFESDGMKKHMKDLKPDRFGDLIAMNALYRPGPIAYIPNYINRKHGR 703

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E++    P ++  L +T G+ +YQEQ+M ++Q L  ++  +ADVLR+AMGKK K  +DK 
Sbjct: 704  EEVKYDMPEMEEYLADTYGITVYQEQLMLLSQKLGNFTKGDADVLRKAMGKKDKATLDKM 763

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K +F+ G + N +   +   ++     FA Y FNKSH+  YA ++YQTA++K HY  E++
Sbjct: 764  KGKFMDGCAANNLPLKVCEKVWTDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYTSEYM 823

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGT 847
            AA +T  +  ++KI  F ++ +   + ++ P VN     F V     I + L  IKG G 
Sbjct: 824  AAVLTSCLGTIDKITFFMEECKNLGLPLLGPDVNESERFFGVNKKGEIRFGLGGIKGAGD 883

Query: 848  TTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQS- 904
                 I+E      P+  + DF  RV+ + +N++  ESL +AGA D    Y R Q  +  
Sbjct: 884  AAVEAIIEERKAGGPYKDIFDFAVRVNLRTVNKKTWESLAYAGAFDSIDEYHRAQYFEMA 943

Query: 905  -------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVENSSVRFENE 955
                   LD + +YA      +    +++F           +      +  N   + + E
Sbjct: 944  EGDTSPFLDKVIRYANNYHAEKAAAQQSLFGAMMNGEPMIARPKPPIVTEWNQIEKLKYE 1003

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            + V+GFY +GHPLD +K  L        ++   T +   I++A +V S Q K  + G+  
Sbjct: 1004 KDVVGFYITGHPLDEFKLELDGFCNCTLDKIYETRQP-EIKVAGIVSSMQTKIAKNGNPF 1062

Query: 1016 GWVTFSEPAKEYEANFF 1032
                  +     E   F
Sbjct: 1063 CIFKIEDYNTSIELALF 1079


>gi|315606343|ref|ZP_07881359.1| DNA-directed DNA polymerase III alpha subunit [Prevotella buccae ATCC
            33574]
 gi|315252034|gb|EFU32007.1| DNA-directed DNA polymerase III alpha subunit [Prevotella buccae ATCC
            33574]
          Length = 1240

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/1120 (31%), Positives = 541/1120 (48%), Gaps = 107/1120 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62
             FVHL VH+ YS+L+G   + N++ K   D    +A+TD   +F   EF+          
Sbjct: 3    DFVHLHVHTYYSILDGQSKIANLVKKAVDDGMRGMALTDHGVMFGIKEFADICAGLNKER 62

Query: 63   CAAG---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
               G    +PI GC++ +          +      +   +++L     GY+ LI+LVSR 
Sbjct: 63   KKEGKEPFKPIFGCEMYVARHRKEDKVKEHG--DNSGYHLIVLAKNYNGYKNLIKLVSRS 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            + +D      R     L++   E LI+ +   +G +           A +    + ++FG
Sbjct: 121  W-VDGYYYRPRTDREDLEKYH-EDLIVCSACIAGEVPAKILKGDIAGAREACEWYHRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     +++ A  + + L+ TN+  F  +E  E
Sbjct: 179  DDYYLELQRHEVTDPTVLANRETYPLQQRANKVLIEFAKEYGIKLICTNDCHFEDKETAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++    ++  +R R +   + K++ EM  IFSD+P+AL NT+EI  +  F   
Sbjct: 239  AHDHLLCLSTQADLNDPNRMRYSKQEWFKSKQEMNDIFSDIPDALTNTLEILDKVEFYSI 298

Query: 287  VHAPILPRFIEKECDDIQ------------------------------------------ 304
             H PI+P F   E    +                                          
Sbjct: 299  EHGPIMPFFPIPEDFGTEEQWRQKFSKEELYKEFTCDEKGENQLSPEDGQAVIDRLGGYD 358

Query: 305  -----KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 K E + L   A  G +             +++ ++ +DFEL+V+  M F GYFLI
Sbjct: 359  KIYRIKFEADYLGKLAYDGAKKLYGDPL------SEEVKEHIDFELHVMKTMGFPGYFLI 412

Query: 360  VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V DFI  A++   + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD 
Sbjct: 413  VQDFINAAREKLGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R  V+++V +KYGHE  A IIT+ S+  K +++DV R  ++P  + + LCK 
Sbjct: 473  DTDFDDDGRGRVLQWVMDKYGHENCAHIITYASMATKNSIKDVARVEKLPLERSNALCKA 532

Query: 479  IP---NDPAHPVSLQAIADDSRFREA-RLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP    D A      AI      +EA    D      ++ ++ LEG  R    HA G +I
Sbjct: 533  IPDRLPDGAKMNLTNAIKYTPELQEAAVSIDERERNTIKYAKMLEGTVRGTGIHACGFII 592

Query: 535  GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               P+S  VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ L+++   +
Sbjct: 593  CRNPISDWVPISTADDPDFPDKKTAVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVV 652

Query: 590  AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             Q     VDL  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +
Sbjct: 653  KQTTGDVVDLDNIPIDDELTYKLYQEGRTIGTFQFESAGMQKYLRELHPTVFEDLIAMNA 712

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RKN    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  
Sbjct: 713  LYRPGPMDYIPDFIKRKNDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E+D LR+AMGKK K  +D  K +FI    +NG    +   I+    KFA Y FNKSHA  
Sbjct: 773  ESDALRKAMGKKKKAIVDAMKPKFIKQGQENGHDPQVLEKIWSDWEKFASYAFNKSHATC 832

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ ++YQTA++K HYP EF+AA MT     + +I K  ++ +  NI  + P VN     F
Sbjct: 833  YSWVAYQTAYLKAHYPAEFMAALMTRRFSQITEITKLMEECKSMNISTLGPDVNESYSGF 892

Query: 829  KVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V     I + L+AIKG+GT  A  I+ E   + P+  + DF  RVD   +NR+  ESL 
Sbjct: 893  GVNRKGEIRFGLSAIKGMGTAAAEAIVSEREKNGPYKDIFDFAQRVDYSCVNRKAFESLA 952

Query: 887  FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
             +G  D FG  R Q +         LD++ +Y Q  + ++     ++F            
Sbjct: 953  LSGGFDGFGLQREQYMGVNSKGEVFLDSLVRYGQRYQLDQQQATNSLFGGMDMVEIATPP 1012

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY------EESVATIRGN 993
            + K  V ++  +   E+ ++G Y S HPLD Y  IL+ +            +  A     
Sbjct: 1013 VPKGEVWSTIEKLNKERDLVGIYLSAHPLDEYTVILKSICNTKCMEVGRDSDKKALAERE 1072

Query: 994  NIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
             +    +V +  ++ + K     G+VT  +     E   F
Sbjct: 1073 ELTFGGIVTNVSERFSAKTNKPFGFVTIEDFDVPGELALF 1112


>gi|156740220|ref|YP_001430349.1| DNA polymerase III subunit alpha [Roseiflexus castenholzii DSM 13941]
 gi|156231548|gb|ABU56331.1| DNA polymerase III, alpha subunit [Roseiflexus castenholzii DSM
            13941]
          Length = 1272

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/1057 (32%), Positives = 546/1057 (51%), Gaps = 48/1057 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VHS YSLL+G  +   I  +       +IA+TD   ++ A+EF   A  AGI+P
Sbjct: 3    DFVHLHVHSEYSLLDGYAATGAIAARAVELGMDSIALTDHGVMYGAMEFYTNAKKAGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG +  +      + T++G         ++LL     GY+ L+ L +R +L   GK   
Sbjct: 63   IIGLEAYMAPGSRREATSRGAKH---YYHLLLLAKDEIGYRNLVRLTTRAHLDGMGKGVF 119

Query: 128  -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
               RI  + L++   EGLI+ +   +G + +       + A +    ++ L G D  ++ 
Sbjct: 120  ARPRIDRALLEQ-HHEGLIVTSACIAGEVIQRLKEEQKEQAREIAAYYRDLLGPDNYFLE 178

Query: 186  LQRHR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            LQ H           ++V++     +PLV TN++ F+  ED +AH +++A+ ++  + + 
Sbjct: 179  LQLHDNTPELEAINDELVRIGKELGIPLVVTNDTHFVRPEDVDAHKMILALGYNMTLKEL 238

Query: 244  DRPRVTP---DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               +       H +                LENT  IA RC+  L+     LP     E 
Sbjct: 239  CAKQYEMDATYHIMSGEEMWRRFKKYGTTPLENTRRIAERCNLNLEFGRVQLPTIDIPEG 298

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D      + LR     GL  R        G   + Y +RL++EL+VI +  F  Y LIV
Sbjct: 299  HD----ASSYLRFVCEEGLMRRF------NGNPPEAYMKRLEYELDVINQTGFPDYMLIV 348

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D++++A+   IP  P RGS   S+  Y L ITD+DP++  LLFERFL+P+R+ MPD DI
Sbjct: 349  WDYVKFARARGIPCLP-RGSAGASLILYCLGITDVDPVKNKLLFERFLSPERLEMPDIDI 407

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR EV+ Y+  +YG E  AQIIT+G+L AKAA+RD+GR L +P S+VDR+ +LIP
Sbjct: 408  DFADSRRHEVLEYIAERYGRENTAQIITYGTLGAKAAIRDIGRVLDIPLSEVDRVARLIP 467

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              P      QA+      ++    +P +  L++ +QK+EG  +   THA G+V+   PL 
Sbjct: 468  ALPVGTTIAQALERVPELKQIYETNPELANLIDWAQKVEGRMKSVGTHACGVVVSRTPLE 527

Query: 541  QLVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
            ++VP+ R  + +   +  F    ++K GL+K D LGL  L+++ ++L ++AQ     ++L
Sbjct: 528  EIVPLQRTTKDENALMAAFEGPTLQKMGLLKMDVLGLTNLSVVAEALQYIAQTTGKTMEL 587

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP DD + +  L    T  +FQLES GM + L  ++P  +ED+ A+V+LYRPGP++ I
Sbjct: 588  ADIPLDDPKVFEALGRGETTNVFQLESPGMTRYLMQLKPTRVEDLYAMVALYRPGPLEQI 647

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             VY + KN  + I  +HP++ P+L++T GVI+YQEQ+M++ Q ++ Y+L +A ++ +A+ 
Sbjct: 648  PVYIHNKNHPQDITYLHPILKPILEDTYGVIVYQEQIMRLLQEVADYTLGQAYIVIKAIS 707

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK K+ M + + +F  G  + G+++  A  ++EL+  FA Y FN+ H+  Y ++SYQTAW
Sbjct: 708  KKDKKLMAENEVKFKQGCLRKGLTQEQADQLWELILPFAGYSFNRPHSTLYGLLSYQTAW 767

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR---- 834
            +K +YPVE++AA +       + I K   + RQ  + ++ P++N    DF + + R    
Sbjct: 768  LKVNYPVEYMAAVLKGAGGATDDIAKAVNECRQRGVPVLGPNINDSAFDFTIREFRDPSD 827

Query: 835  ------IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                  I + LAAIK VG      I+    A  PF SLED C RVD   LN+RVLESL+ 
Sbjct: 828  GNLKRGILFGLAAIKNVGAGPIEAILRERDAGGPFRSLEDVCERVDRHALNKRVLESLIK 887

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
             GALD    +R Q L+ LD   +     +KNR     ++F       ++ I      V  
Sbjct: 888  CGALDALPGNRWQKLEILDAAMEAGARAQKNRETGQIDMFGGLVSQAAEVIAALPLPVIE 947

Query: 948  S-----SVRFENEQRVLGFYFSGHP--LDVYKPILRK---MGIKGYEESVATIRGNNIRL 997
                    +   E+ +LG  FS  P    + +  +     +      E +    G     
Sbjct: 948  ETAERRKEKLAWEKELLGVVFSSDPRKTALERANIEHRVPLAAIRNAEGLPDYLGKVHTF 1007

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEP-AKEYEANFFP 1033
            A M+   +   T+KG  +   T  +      E   FP
Sbjct: 1008 AGMLTRVRMIATKKGDTMLVATLEDENEDTVELVAFP 1044


>gi|321312457|ref|YP_004204744.1| DNA polymerase III DnaE [Bacillus subtilis BSn5]
 gi|320018731|gb|ADV93717.1| DNA polymerase III DnaE [Bacillus subtilis BSn5]
          Length = 1115

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/1026 (37%), Positives = 588/1026 (57%), Gaps = 37/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQVHS YSLL  A ++  ++ +       ++A+TD + ++ A++F +   A GI P
Sbjct: 2    SFVHLQVHSGYSLLNSAAAVEELVSEADRLGYASLALTDDHVMYGAIQFYKACKARGINP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    +   D+                +VLL  +  GYQ L+++ S +    +G    
Sbjct: 62   IIGLTASVFTDDSEL----------EAYPLVLLAKSNTGYQNLLKISSVLQSKSKGGLKP 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
                 WL     EG+I +T G  G I+        + A +  L F+ +FG    Y + Q 
Sbjct: 112  ----KWLHSY-REGIIAITPGEKGYIETLLEGGLFEQAAQASLEFQSIFGKGAFYFSYQP 166

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +G  +    Q+++L+    +P+ AT +  ++ +ED  A+  L A+     ++      +
Sbjct: 167  FKGN-QVLSEQILKLSEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLTDAPAEDL 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             PD  LK   EM +I+ + PEAL+ +VEIA +C   + +    LP F   +        +
Sbjct: 226  -PDLDLKPLEEMQNIYREHPEALQASVEIAEQCRVDVSLGQTRLPSFPTPDG----TSAD 280

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L +  + GL           G   + Y +RL +EL+VI RMKFS YFLIV DF++ A 
Sbjct: 281  DYLTDICMEGLR-------SRFGKPDERYLRRLQYELDVIKRMKFSDYFLIVWDFMKHAH 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ AY L ITD+DP++  LLFERFLNP+R+SMPD DIDF   RRD
Sbjct: 334  EKGIVTGPGRGSAAGSLVAYVLYITDVDPIKHHLLFERFLNPERVSMPDIDIDFPDTRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YVQ KYG   VAQIITFG+L AKAALRDVGR   +   + D+L KLIP+ P   + 
Sbjct: 394  EVIQYVQQKYGAMHVAQIITFGTLAAKAALRDVGRVFGVSPKEADQLAKLIPSRPGMTLD 453

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                    +  +       + ++  I++K+EGL RHASTHAAG+V+ + PL+ +VP+  +
Sbjct: 454  EAR-QQSPQLDKRLRESSLLQQVYSIARKIEGLPRHASTHAAGVVLSEEPLTDVVPLQ-E 511

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK-SLDFLAQRGVKVDLSLIPFDDHE 607
                + +TQ+ M  +E  GL+K DFLGL+ LTL++  +     +  +K+DLS I + D +
Sbjct: 512  GHEGIYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESITSMIEKEENIKIDLSSISYSDDK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL+   T GIFQLES+GMR  L+ + P  +EDI+A+ +LYRPGP++NI ++ +RK+G
Sbjct: 572  TFSLLSKGDTTGIFQLESAGMRSVLKRLTPSGLEDIVAVNALYRPGPMENIPLFIDRKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +  +   H  +  +L++T GVI+YQEQ+M IA  ++G+SL EAD+LRRA+ KK KE +D+
Sbjct: 632  RAPVHYPHEDLRSILEDTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKKKEILDR 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ G  K   S   A  +++L+ KFA+YGFN+SHA AY++I  Q A++K HYP+ F
Sbjct: 692  ERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHYPLYF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +   +T  + N +KI ++  +A+   I+I+PPSVN     F V +  + YSL AIK VG 
Sbjct: 752  MCGLLTSVIGNEDKISQYLYEAKGSGIRILPPSVNKSSFPFTVENGSVRYSLRAIKSVGV 811

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            +  + I +A  +KPF+ L DFC RV SK +NR++LE+L+F+GA+D FG +R  LL S+D 
Sbjct: 812  SAVKDIYKARKEKPFEDLFDFCFRVPSKSVNRKMLEALIFSGAMDEFGQNRATLLASIDV 871

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              ++A+    +  +    +F  E  +FS K    +            E+  LG YFS HP
Sbjct: 872  ALEHAELFAAD--DDQMGLFLDE--SFSIKPKYVETEELPLVDLLAFEKETLGIYFSNHP 927

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L  ++  L   G     ++   ++   + L  ++   +  +T+ G  + ++T S+   E 
Sbjct: 928  LSAFRKQLTAQGAVSILQAQRAVK-RQLSLGVLLSKIKTIRTKTGQNMAFLTLSDETGEM 986

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 987  EAVVFP 992


>gi|329296121|ref|ZP_08253457.1| DNA polymerase III subunit alpha [Plautia stali symbiont]
          Length = 1125

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1013 (39%), Positives = 579/1013 (57%), Gaps = 38/1013 (3%)

Query: 41   QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
             PAIAITD  NL   + F   A +AGI+PI+G    +                  +  + 
Sbjct: 1    MPAIAITDYTNLCGLVRFYGSAHSAGIKPIVGADFQVA----------SDLMGDELTQLT 50

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            +L +   GYQ L  L+SR Y    G     I   WL E+G    I+L+GG  G + R+  
Sbjct: 51   VLAANNTGYQNLTLLISRAYQRGYGIAGPIIDRDWLLELGEGL-ILLSGGRRGDVGRSLL 109

Query: 161  FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLF 219
              ++ +  + L  +++ F +R Y+ L R    D        V+LA    +P+VATN   F
Sbjct: 110  RGNNALVAQCLSFYQQHFPNRYYLELTRTGRPDEEAYLHAAVELAIAESVPVVATNEVCF 169

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS-EMVSIFSDLPEALENTVEIA 278
            L+EED++AH++ +A+     +    RPR            EM  +FSD+PEALEN+VEIA
Sbjct: 170  LNEEDFDAHEIRVAIHDGYTLDDPKRPRNYSPQQYMRSEGEMCELFSDIPEALENSVEIA 229

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA---KGYHAQ 335
            +RC+  +++           +        E+ L  K+  GLE RLA        +     
Sbjct: 230  KRCNVTVRLGEYF-----LPQFPTGDMSTEDFLVMKSREGLEERLAFLFPDEQVRAKRRP 284

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
            +Y +RLD ELNVI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+
Sbjct: 285  EYDERLDIELNVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGSLVAYALKITDL 344

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V   YG + V+QIITFG++ AK
Sbjct: 345  DPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAEMYGRDAVSQIITFGTMAAK 404

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
            A +RDVGR L  PY  V+R+ KLIP DP   +  +A   + +  E   AD  V  L++++
Sbjct: 405  AVIRDVGRVLGHPYGFVERISKLIPPDPGMTLE-KAFQAEPQLPEIYEADEEVKALIDMA 463

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            +KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLG
Sbjct: 464  RKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDENGQFPVTQFDKNDVEYAGLVKFDFLG 523

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSL-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            L+TLT++  +L  +  R  K  L       IP DD +++ +L    T  +FQLES GM+ 
Sbjct: 524  LRTLTIIDWALKMINPRREKQGLPPINIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKD 583

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YNNRKNGKEKIVSIHPLIDPMLK 683
             ++ ++PDC ED+IALV+L+RPGP+ + +V       +         I   H  + P+L+
Sbjct: 584  LIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDIQWQHESLKPVLE 643

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EEM KQ+  F  GA K GI+ 
Sbjct: 644  PTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFQDGAEKMGING 703

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+AA MT ++DN EK+ 
Sbjct: 704  ELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADIDNTEKVV 763

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861
                +  +  ++++PP +N+    F V  D  I Y + AIKGVG      I+EA      
Sbjct: 764  GLVDECWRMGLKVLPPDINSGLYPFHVNDDGEIVYGIGAIKGVGEGPIEAILEARNQGGY 823

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F  L D C+R D+KK+NRRV+E L+ +GA D  G  R  L+ +L N  K A    K    
Sbjct: 824  FKELFDLCARTDTKKINRRVMEKLIMSGAFDRLGPHRAALISALGNALKAADQHAKAEAT 883

Query: 922  KHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-G 979
               ++F    +     + +    +     V+ + E+  LG Y +GHP++ Y   + +  G
Sbjct: 884  GQADMFGVLAEEPEQVEQSYAAITPWPEQVQLDGERETLGLYLTGHPINQYLKEIERYVG 943

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                ++   T RG     A +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 944  GMRLKDMHPTERGKVTVAAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 996


>gi|28493477|ref|NP_787638.1| DNA polymerase III subunit alpha [Tropheryma whipplei str. Twist]
 gi|28476519|gb|AAO44607.1| DNA polymerase III alpha chain [Tropheryma whipplei str. Twist]
          Length = 1164

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1060 (35%), Positives = 555/1060 (52%), Gaps = 49/1060 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +  Y+    SFVHL VH+ YS+L+GA    +++ K A D+ PAIAITD  N F A +F +
Sbjct: 1    MRDYM----SFVHLHVHTDYSMLDGAARTEDLMRKAAEDKMPAIAITDHGNTFGAFDFWK 56

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMT---------NQGKTPFPTVPSIVLLVSTAEGYQR 111
             A    I PIIG +  +    N K               +       + LL    EG   
Sbjct: 57   TAKTYDINPIIGMEAYLTPGTNRKEKVRKFFASGGPDDVSAGGAYTHLTLLSQNNEGMHN 116

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L +L S   + +      RI +  L +  + GLI  TG  SG I           A +  
Sbjct: 117  LFKLSSLASI-EGYYFKPRIDIELLNQY-SNGLIATTGCPSGEIQTRLRLGQYSEARQAA 174

Query: 172  LTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
               + +FG +  Y  +  H    ++     +++LA    LPL+ATN+  +++ ED  +H 
Sbjct: 175  AQMRDIFGPENYYCEVMDHNLEIEKAVMPDLLRLAGDLGLPLLATNDLHYVNSEDSASHA 234

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVH 288
             L+ V   + ++  +R +   D +    S  + I F DLPEA +NT+ +A RC       
Sbjct: 235  ALLCVQSGSTINDPNRFKFDSDEFYLKSSSEMRILFEDLPEACDNTLLVAERCHINFDTQ 294

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
               +PRF   E +     E +   ++   G+  R   G       ++   ++ ++E+ V+
Sbjct: 295  RSFMPRFSVPEGE----TENSWFASEVKRGIASRYPNG------PSRRVIEQAEYEIRVV 344

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
                ++GYFLIVADFI WAK N I VGPGRGSGA S+ AYA+ ITD+DPL   L+FERFL
Sbjct: 345  QEAGYAGYFLIVADFINWAKLNGIRVGPGRGSGAASMAAYAMRITDLDPLEHGLIFERFL 404

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP R+SMPDFDIDF + RR EVI YV  KYG + VAQI+TF +++AK AL+D  R L  P
Sbjct: 405  NPARISMPDFDIDFDERRRGEVIDYVTKKYGSDHVAQIVTFATIKAKQALKDSARVLSYP 464

Query: 469  YSQVDRLCKLIPN-DPAHPVSLQAIADD--------SRFREARLADPSVDRLLEISQKLE 519
            YS  +RL K +P       + L+AI D         S  R+   +D  + ++   ++ LE
Sbjct: 465  YSFGERLTKAMPPAVMGREIPLRAIFDTTHSRHREASEVRQMIESDYEMQQIFNTAKGLE 524

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
             L R  + HAAG+++ D P+  ++P+ +       VTQF+    E  GL+K DFLGL+ L
Sbjct: 525  NLKRQWAVHAAGVIMSDAPIIDIIPIMKRESDGHIVTQFDYASCESLGLVKMDFLGLRNL 584

Query: 580  TLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  +L  + Q +  KVDL  +P DD E Y LL    TLG+FQL+S  +RQ LE MQPD
Sbjct: 585  TIIDDALANIRQNKNTKVDLENLPLDDPEVYKLLRRADTLGVFQLDSGPIRQLLELMQPD 644

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGVIIYQ 692
              +DI A ++LYRPGP+   +   Y  RKN K++I  IHP +      +L  T G+I+YQ
Sbjct: 645  SFDDISAAIALYRPGPMGARSHTNYALRKNRKQEIDHIHPELTKDLSVLLSSTYGLIVYQ 704

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV+ IAQ L+G++L EADVLR AMGKK K+E+D+Q  +F +G  K G S      ++ +
Sbjct: 705  EQVIGIAQKLAGFTLEEADVLRWAMGKKKKDELDRQYNKFANGMRKAGYSDGATEALWNV 764

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  F+DY FNK+HA AY +ISY TA++K HYP E++AA +T    + +K+  + Q+ R  
Sbjct: 765  LLPFSDYAFNKAHATAYGLISYWTAYLKAHYPTEYMAALLTSVETSRDKLGLYLQECRHM 824

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
             I+++ P +N     F      I + L AIK VG      I+E   D PF SL DF  R+
Sbjct: 825  CIKVLLPDINVSRSGFTPSGENILFGLGAIKNVGANLIDDILEVREDGPFVSLIDFVQRM 884

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
                LNRR + SL+ AGA D    +R  L+    ++ +  Q   +       ++      
Sbjct: 885  PHSVLNRRSVMSLIQAGAFDSIHPNRRSLMDIHRSVLENCQANARRSD---VSLLDGLLD 941

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
             +    +       ++  R + E+ +LG Y S HPLD  +  L K       E ++    
Sbjct: 942  EYEG-FSPPDIPDWDNRERLKYEREMLGMYVSSHPLDGLEDSLLKFRDCSIAECISRKPQ 1000

Query: 993  NNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANF 1031
            + IR+A ++ S + K  R+ G R       + + E +   
Sbjct: 1001 DVIRVAGLITSVEHKVARRTGMRYAHAILEDTSGEIQIML 1040


>gi|332177029|gb|AEE12719.1| DNA polymerase III, alpha subunit [Porphyromonas asaccharolytica DSM
            20707]
          Length = 1272

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/1125 (30%), Positives = 547/1125 (48%), Gaps = 109/1125 (9%)

Query: 6    EKSPS-----FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
              SPS     +V L VHS YS+L+G   +  ++DK  A   P IA+TD   ++    F+ 
Sbjct: 8    PHSPSAGTRMYVPLHVHSHYSILDGMAPVEKLVDKAVACGMPGIALTDHGAMYGIKNFTN 67

Query: 61   KA-------CAAGIQ-----------------------------------PIIGCQLDID 78
             A         A I+                                    I+GC++ + 
Sbjct: 68   YANDKINGDKLAQIKSLRKQIKELEAEASNADEIARIEGEIKTIEQSLFKAIVGCEVYVA 127

Query: 79   -------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
                    +D     N  ++   +   ++LL    +GY+ LI++VS  +         RI
Sbjct: 128  RRSLELKDKDAKDPDNPTRSIDRSGYHLILLAKNLQGYRNLIKMVSIAW-EHGEYYKPRI 186

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L E   EG+I  +    G I +         A K  L +K+ FG+  Y+ +  H  
Sbjct: 187  DKKLLSE-HHEGIIASSACLGGEIAQHILHGRLDEARKTALWYKETFGEDYYLEIMLHPN 245

Query: 192  YDR-----------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             D                +V+++     + ++ATN++ FL+EED EAHD L+ +  ++ +
Sbjct: 246  SDPLGGQETYHKQLQVAQEVIKMGQELGIKVIATNDTHFLNEEDAEAHDHLICMTTNSPI 305

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            S  +R R T   +LK+  EM ++F+D P+ LENT+EI  +  +    HAP++P F   E 
Sbjct: 306  SDPNRMRYTKQEWLKSPEEMTALFADYPDVLENTLEICNKVEYYSIDHAPLMPHFELPEG 365

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                  E++ LR+    G + R             + ++R+D EL VI  M F GYFL+V
Sbjct: 366  F---ASEDDYLRHLTYEGAKKRYGDPV------PPEVQERIDMELGVIQNMGFPGYFLVV 416

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI  A++  + VGPGRGS AGS  AY L+IT I+P+++ LLFERFLNPDR+SMPD DI
Sbjct: 417  QDFIAAARQLGVRVGPGRGSAAGSAVAYCLSITQIEPIKYGLLFERFLNPDRISMPDIDI 476

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF    R  V+ +V NKYG + V+ IIT  ++  K A++ V R  ++P  Q +RLCKLIP
Sbjct: 477  DFDDKNRWRVLEWVTNKYGRDHVSNIITLTTMATKGAIKGVARVEELPLDQANRLCKLIP 536

Query: 481  NDPAHPVSL----QAIADDSRFREA-RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            +     V        + ++  FREA    +  +   +  +++LEG       HA G++I 
Sbjct: 537  DRAPEGVKHLTLDWMVQNNQEFREASVSQNEQLANTIRYARQLEGTASTTGVHACGVIIS 596

Query: 536  DRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
              P+S +VP+      D      V Q+  K IE  GLIK DFLGL+TL+++  +L  +  
Sbjct: 597  GPPVSDVVPLSTAIDPDTNERKLVAQYEGKVIEPTGLIKMDFLGLQTLSIINDALQNIKM 656

Query: 592  RGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  D+  IP DD +T+ L +   T+G FQ ES GMR+ L+ ++P   +D++A+ +LY
Sbjct: 657  SYGIDLDIDTIPVDDPKTFELYSRGDTVGTFQFESPGMRKYLQQLEPTEFKDLVAMNALY 716

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+DNI  +  RK G+++I    P ++P LK+T G+ +YQEQVM ++++L  ++  ++
Sbjct: 717  RPGPMDNIPTFIERKLGRQEITYDLPEMEPYLKDTYGITVYQEQVMILSRVLGDFTRGDS 776

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D LR+AMGKK ++EM K + +F+      G  +     I++   KFA Y FNKSH+  YA
Sbjct: 777  DSLRKAMGKKKEKEMAKYRIKFVENGVAKGHPRDTLERIYDGWQKFASYAFNKSHSVCYA 836

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++YQTA++K HYP +F+AA +T      +K+ K+ ++ +   +++  P VN     F  
Sbjct: 837  WVAYQTAYLKAHYPAQFMAALLTCNQSKSDKLTKYLEEVQHMGLEVKGPDVNESFTAFSA 896

Query: 831  G-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              +  I + L  I  VG + A  I++   +   +  + DF  R D    +RR LE+L+ +
Sbjct: 897  NKEGVIRFGLGGISHVGLSVAEAIIQEREEHGAYQDVYDFFQRTDLSNCSRRALEALILS 956

Query: 889  GALDCFGYSRMQLLQSLD-----------------NIQKYAQWVEKNRTNKHENIFAHEK 931
            GA D FG  R      +                   + +Y + +E  RT    ++F    
Sbjct: 957  GAFDNFGIEREVYFAPIAKSGVSSLSYGKDETFLTALMQYGKILESERTQVQASLFGDSD 1016

Query: 932  GTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
             +      L        +   R   EQ  +G Y S HPLD Y  I+  +      E    
Sbjct: 1017 PSVKLPKPLPPKDVEPWSHLERLTKEQTYIGMYLSAHPLDPYAFIIEYLCNCPASELDQF 1076

Query: 990  IR-G-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               G   +  A +V   +Q  +++      +   + +   E   F
Sbjct: 1077 AELGLTQLTCAGLVTKVRQGISKRNEPYAIIQIEDTSGTGEIPLF 1121


>gi|282879110|ref|ZP_06287869.1| putative DNA polymerase III subunit alpha [Prevotella buccalis ATCC
            35310]
 gi|281298752|gb|EFA91162.1| putative DNA polymerase III subunit alpha [Prevotella buccalis ATCC
            35310]
          Length = 1235

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1110 (32%), Positives = 554/1110 (49%), Gaps = 91/1110 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62
             FVHL VH+ YS+L+G   +  ++DK  AD    +AITD  N+F   EF   A       
Sbjct: 3    DFVHLHVHTYYSILDGQSPVKRLVDKAVADGMRGLAITDHGNMFGIKEFFDYANTVNKQL 62

Query: 63   CAAG---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
             A G    +PI GC++ +  +              +   +++L     GY+ LI+LVS  
Sbjct: 63   KADGKQPFKPIFGCEMYVARRSRFDKVK--DMGDMSGYHLIVLAKNYRGYKNLIKLVSHA 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +  +      R     L++   E LI+ +   +G + R         A + +  +K++FG
Sbjct: 121  W-EEGYYMRPRTDREELEKYH-EDLIVCSACLAGEVPRKIIAGDMAGAREAVEWYKRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ +QRH   D             +     +  LA  + + +V TN+  F+ +E+ E
Sbjct: 179  DDYYLEIQRHEVKDPSIRANREAYPMQQRANQVIFNLAKEYGVKVVCTNDVHFVDKENAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++    +    R   +   + K R EM SIFSD+PE + NT+EI  +      
Sbjct: 239  AHDHLLCLSTGKDLDDPTRMLYSKQEWFKTREEMNSIFSDVPETMANTLEILNKVETYSI 298

Query: 287  VHAPILPRFIEKECDDIQK------EEENELRN--------------------KAVAGLE 320
             H PI+P F   E    ++       EE+ LR                       + G E
Sbjct: 299  NHDPIMPNFPIPESFGKEEDWKQKFTEEDLLREFTTDENGENPMSEEDAQKRVDHLGGYE 358

Query: 321  VRLAQGAIAK---------------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    A                    ++   R+ FEL+V+  M F GYFLIV+DFI+
Sbjct: 359  KMYRIKFEADYLQHLAYEGAKPLYGDPLPKEVDDRIRFELHVMKTMGFPGYFLIVSDFIR 418

Query: 366  WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             A++   + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+S+PD D DF  
Sbjct: 419  AAREELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRISLPDIDTDFDD 478

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D R +V+++V +KYGHE  A IIT+GS+  K +++DV R  ++P  + + LCK IP    
Sbjct: 479  DGRGKVLKWVMDKYGHENCAHIITYGSMATKNSIKDVARVEKLPLERANALCKAIPERLP 538

Query: 485  HPVSLQ---AIADDSRFREARLADPSVD-RLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              + +    AI      + A ++    +   ++ ++ LEG  R    HA G +I   P+S
Sbjct: 539  DKMKMNLNNAIKCTPELQMAEVSTDIRESNTIKYAKMLEGTVRGTGIHACGFIICRDPIS 598

Query: 541  QLVPMYRDVRSDL-----PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
              VP+      D        TQ++   IE+ GLIK DFLGLKTL+ L++++  +   + +
Sbjct: 599  DWVPVSTADDPDFKDEKTNCTQYDGHVIEETGLIKMDFLGLKTLSELKEAVKNVKLTKNI 658

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +DL  IP DD  TY L     T+G FQ ES+GM+  L  + P   ED+IA+ +LYRPGP
Sbjct: 659  DIDLDKIPIDDELTYKLYQEGRTIGTFQFESAGMQNYLRQLSPTKFEDLIAMNALYRPGP 718

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +DNI  +  RK G+E+I    P+++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR
Sbjct: 719  MDNIPSFIARKKGEEEITYPIPVMERYLKDTYGITVYQEQVMLLSRLLANFTRGESDALR 778

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +AMGKK K  +D  K +FI G  KNG  + +   I+    KFA Y FNKSHAA Y+ +++
Sbjct: 779  KAMGKKKKAIVDAMKPKFIEGGKKNGYDENVLDKIWADWEKFASYAFNKSHAACYSWVAF 838

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833
            QTA++K HYP EF+AA M+   D + +I K   + +   I  + P VN     F V    
Sbjct: 839  QTAYLKAHYPAEFMAAIMSRRKDQITEISKLMDECKSLRIATLGPDVNESYQKFGVNHKG 898

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I + LAAIKG+G   A  I++   A   +  + DF  RVD  ++NR+  ESL  +G  D
Sbjct: 899  EIRFGLAAIKGMGDAAATAIIQEREAHGLYQDIFDFAHRVDFTQVNRKAFESLALSGGFD 958

Query: 893  CFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
             FG  R     +       +D + +Y Q  +  ++    ++F            + K  +
Sbjct: 959  SFGIPRESYFTANSKGELFIDTLVRYGQLYQNKKSEIEHSLFGGVDAVEIATPPIPKPEL 1018

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNIRLAAMVV 1002
             ++  +   E  ++G Y S HPLD +  +L+ M      E        +  ++  A M+ 
Sbjct: 1019 WSNIEKLNREHDLVGIYLSAHPLDEFSIVLKSMCNTSCTELGDKAELAKKADVVFAGMIT 1078

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + K TR G   G+VT  + +   E  FF
Sbjct: 1079 EVKDKFTRTGKPCGFVTIEDFSGTGEIAFF 1108


>gi|241663600|ref|YP_002981960.1| DNA polymerase III subunit alpha [Ralstonia pickettii 12D]
 gi|240865627|gb|ACS63288.1| DNA polymerase III, alpha subunit [Ralstonia pickettii 12D]
          Length = 1172

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1061 (38%), Positives = 609/1061 (57%), Gaps = 53/1061 (4%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             SP FVHL++HS YS+++G + L++ +   A D   A+A+TD  N F  + F ++A   G
Sbjct: 2    NSPRFVHLRLHSEYSVVDGNVRLDDAVKAAAKDGMGALALTDLANAFGLVRFYKEARGKG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++PI+G  + I   D                 ++LLV   +GY  L +L++R +L +Q +
Sbjct: 62   VKPIVGADVWITNHDERDKP----------TRLLLLVRDKQGYLNLCQLLARAWLSNQHR 111

Query: 127  QSVRICLSWLQEIGTEG------LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                I   W  E G E       L+ L+G  +G I  A    +  +A K    + ++F  
Sbjct: 112  GRAEIAPEWFDEPGVENAPLAAGLLALSGAMAGDIGVALANGNEALARKLATHWSRVFPG 171

Query: 181  RLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
              Y+ LQR  H G + Y   Q V+LA   +LP+VAT+   F++ +D+ AH+    +A   
Sbjct: 172  AFYIELQRAGHAGTEAYI-QQAVKLASAMQLPVVATHPVQFMTPDDFTAHEARTCIAEGE 230

Query: 239  VVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            +++   R  R T + Y K + EM ++F+D+P AL N V+IA+RC+  L++  P LPRF  
Sbjct: 231  LLANPRRARRFTTEQYFKTQDEMCALFADIPSALANAVQIAQRCNLKLELGKPKLPRFPT 290

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
             +   +    ++ L   A  GLE R+         +     +Y  RL+FE   I +M F 
Sbjct: 291  PDGMSL----DDYLVQLAKEGLEKRMEVLFPDEAVRESKRAEYYARLEFETGTIIKMGFP 346

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIVADFI WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+S
Sbjct: 347  GYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVS 406

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFDIDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RDVGR L + Y+ VD 
Sbjct: 407  MPDFDIDFCQHGRDRVIQYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDG 466

Query: 475  LCKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            + KLIP  P   V+L+    ++    E    +  V +LLE++Q++EG+ R+   HA G++
Sbjct: 467  VAKLIPFKPGKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVL 526

Query: 534  IGDRPLSQLVPMY-RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK---SLDFL 589
            I    L+   P+Y +       V+Q++   +E  GL+KFDFLGL TLT+L      +  L
Sbjct: 527  IAPGKLTDFCPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRML 586

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                   + S IP  D + + +L T  T+ +FQLES GM+  L+  +PD  EDIIALV+L
Sbjct: 587  DPSKADWNCSHIPLTDKKAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVAL 646

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            YRPGP+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  
Sbjct: 647  YRPGPMDLIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGG 706

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM + +  F +GA+K+G+S   A  IF+L+ KFA YGFNKSHAAAY
Sbjct: 707  ADLLRRAMGKKKAEEMAEHRALFRAGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAY 766

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-QFNIQIMPPSVNTPCVDF 828
            A+++Y TAW+K H+P EF+AA+M+L MD+ +K+K    DAR +  + I+PP +N     F
Sbjct: 767  ALLAYYTAWLKAHHPAEFMAANMSLAMDDTDKVKILYDDARGKNGLTILPPDINASQYRF 826

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
               D   I Y L  +KG G      I+ A  D PF  L DFC RVD +++NRR +E+LV 
Sbjct: 827  APTDAKTIRYGLGGVKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVR 886

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK--ITLEKFSV 945
            AGA D    +R QLL S+          +K       ++F    G  +++    L     
Sbjct: 887  AGAFDSLNDNRAQLLASIG--LAMEAAEQKAAAANQVSLFDLMSGDDAEQHRPELVDEPA 944

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA------------TIRGN 993
             ++  + + E++ LGFY SGH  D Y+  +R+       +                    
Sbjct: 945  WSTKRKLQEEKQALGFYLSGHLFDEYRDEVRRFARTTLADLAREVTDKGNGGGYGNRDAR 1004

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE--YEANFF 1032
            N  +A ++V ++ + T++G  +  V   + +     E   F
Sbjct: 1005 NKTVAGVIVGQRTQMTQRGK-MLIVMLDDGSASEATEVTVF 1044


>gi|296116516|ref|ZP_06835126.1| DNA polymerase III subunit alpha [Gluconacetobacter hansenii ATCC
            23769]
 gi|295976728|gb|EFG83496.1| DNA polymerase III subunit alpha [Gluconacetobacter hansenii ATCC
            23769]
          Length = 1142

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 471/1038 (45%), Positives = 658/1038 (63%), Gaps = 26/1038 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  + +F+HL+VHS+YSL +GA+ +  I+      + P +AITDT N+F ALEFSQ    
Sbjct: 1    MSHA-NFIHLRVHSAYSLSQGAIRVPEIISLAHEMRMPGVAITDTGNMFGALEFSQYCSK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GIQPIIGCQ+ +          +   P      +VLL     G   L  L S  +L   
Sbjct: 60   KGIQPIIGCQIAL--------PARCDKPGSPAEPMVLLARNETGLMNLQYLSSAGFLQ-H 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  + L  L +   +GL ++TGG+ GP+ R         A + L      FG  + V
Sbjct: 111  ETDEPTVPLDILCDR-ADGLFLMTGGTRGPLFRMLAEGLEADAARLLARLHAAFGRYMAV 169

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L RH    +R  E  ++ LA    +PLVATN   F   + YEAHD L+ +A    ++++
Sbjct: 170  ELHRHGLSVERAVEPGMIALADRAGIPLVATNECFFPRPDMYEAHDALLCIAQGRTMAEQ 229

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR RVTP+H+ K    M  +F+DLPEA +NT+EIAR C+  ++   P+LP   +      
Sbjct: 230  DRWRVTPEHWFKPPHMMRELFADLPEACDNTLEIARLCAIKVETRKPLLPVCPKVAP--- 286

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E+  LR+ A  GLE RLA+  I      Q Y +RL FEL++IARM F GYF+IVADF
Sbjct: 287  GATEDETLRSMARDGLERRLARMDID-EQTRQTYEERLAFELDIIARMGFPGYFMIVADF 345

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK ++IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFC
Sbjct: 346  IQWAKAHDIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFC 405

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QDRRDEVIRYV+ +YG +RVAQIITFG LQA+AA+RDVGR L + +  V+++ +LIPN+P
Sbjct: 406  QDRRDEVIRYVRQEYGPDRVAQIITFGKLQARAAVRDVGRVLGLSFGMVNKVAELIPNNP 465

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A PV+  QAI  + R +E R  D ++ RL+EI+ +LEGL+RHASTHAAG+VIGDR L +L
Sbjct: 466  AKPVTLKQAIDGEPRLQEMRDNDETLRRLMEIALQLEGLFRHASTHAAGVVIGDRELVEL 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD +SD+ VTQ+NMK++E+AGL+KFDFLGL TLT+LQ++  FL + GV VDL+ +P
Sbjct: 526  VPLYRDPKSDMLVTQYNMKFVEQAGLVKFDFLGLTTLTILQRAAQFLERLGVTVDLAALP 585

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  TY +L    T G+FQ E +GMR  L+ M+P  +ED+IA V+LYRPGP+ NI  Y 
Sbjct: 586  LDDALTYDMLARGDTGGVFQFEGAGMRDVLKQMRPTRLEDLIAAVALYRPGPMANIPDYC 645

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G E     H  I  +L ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+
Sbjct: 646  RRKHG-EAWEPPHEEIRDILSETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIR 704

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EMD+Q+  F  GA+K GI    AV +F+L+AKFADYGFNKSHAAAYA++SYQTAWMK +
Sbjct: 705  AEMDQQRVIFTEGATKRGIEHDKAVEVFDLMAKFADYGFNKSHAAAYALVSYQTAWMKAN 764

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYY 837
            +PV FLAA M+L  +  EK+    Q+A +  I+++PP +N    DF V      +  I Y
Sbjct: 765  HPVAFLAACMSLAREKTEKLAALRQEAERLGIKVLPPDINASDADFTVEKLPDGEYGIRY 824

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            +LAA+K VG +  + ++    ++PF  + D  +R+D + +N+  LE+L  AGA D    +
Sbjct: 825  ALAAVKKVGLSAMQALVAVRGERPFADMTDIAARIDPRNVNKMQLENLARAGAFDTILPN 884

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTN-KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R Q   +++ + + AQ   +   + +        + T  + + L          R   E 
Sbjct: 885  RAQACAAVETVLRRAQSHAQEAASGQIGLFGGGGEATAQETLRLPSVPDWPEFDRLNMEA 944

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYE--ESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
              +GF+ + HPLD Y P++R++G+      E+ A      +++A  VV ++++ TR G++
Sbjct: 945  DAIGFHLTAHPLDSYGPLMRRLGVVKSTGLETAAAAGITRVKIAGCVVDRKERPTRTGNK 1004

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + WV  S+ +   E  FF
Sbjct: 1005 MAWVRLSDASGGCEVTFF 1022


>gi|89100367|ref|ZP_01173231.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
 gi|89084886|gb|EAR64023.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
          Length = 1119

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1029 (37%), Positives = 602/1029 (58%), Gaps = 40/1029 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF+HL V+S+YSLL   +S+  ++ +       AIA+TD N ++  ++F ++     I+P
Sbjct: 2    SFIHLHVYSAYSLLTSTVSVEQLVARAKQKGFSAIALTDRNVMYGTVQFYKECLKHSIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG   DI+     K  +           +VLL    +G+Q L+++ S +     G    
Sbjct: 62   IIGLCADIESAGGEKGPSP----------LVLLAQNQDGFQNLLKISSTLQTKADGG--- 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
             I + WL+   + GLI LT G  G I++       + A + +  + ++FG DR Y+  Q 
Sbjct: 109  -IPVKWLKHYSS-GLIALTPGLEGEIEQYIAGGEEEKALEAIRLYTEIFGKDRFYLAYQD 166

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +      ++ +L+  H     A N   +  +ED  A + L+A+ +   +  ++R R
Sbjct: 167  HGLPEEKKINRKLKELSVNHGFQTAAANQVFYAEKEDAFAQECLLAIKNGDKLQDENRFR 226

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              + ++YLK   EM  +F++  EALENT++I  +C+ +L++    LP++   E D     
Sbjct: 227  LQSDEYYLKTAEEMSEVFTESTEALENTIKIMEQCNVMLELDKKHLPKYPVPEGD----- 281

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L      G   R  +        ++ +RQRL +EL +I +MKFS YFLIV DFI++
Sbjct: 282  ADTLLEELCWKGFAERYPE-------ASEVHRQRLLYELGIIKKMKFSDYFLIVWDFIKF 334

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++N I  GPGRGS AGS+ +Y L ITD DP+   LLFERFLNP+R+SMPD DIDF   R
Sbjct: 335  SRENGILTGPGRGSAAGSMVSYVLYITDADPIEHELLFERFLNPERISMPDIDIDFPDHR 394

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEVIRYV  KYG   VAQIITFG+L AKAA+RD GR   +   +++++ +LIP+ P   
Sbjct: 395  RDEVIRYVAKKYGELHVAQIITFGTLAAKAAMRDTGRVFGLNAKELEQVSRLIPSRPGTN 454

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +      +  + R          RL E + K+EGL RH STHAAG+VI + PL  +VP+ 
Sbjct: 455  LKTA-YKESEQLRAFTAESSLNKRLFETALKIEGLPRHTSTHAAGVVISEFPLVNVVPIQ 513

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDD 605
            +     + +TQ++M+ +E AGL+K DFLGL+ L+L++  L     + G K D+  IP DD
Sbjct: 514  QG-HEGVYLTQYSMEHLEAAGLLKMDFLGLRNLSLIETILSSIQRKTGKKPDIKKIPLDD 572

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +TY LL++  T G+FQLES GMR  L+ ++P   EDI+A+ +LYRPGP++NI  + NRK
Sbjct: 573  EKTYRLLSSGETTGVFQLESDGMRNVLKKLKPTRFEDIVAVNALYRPGPMENIPSFINRK 632

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKE I   HP + P L++T GVI+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK K+ +
Sbjct: 633  HGKEPISYPHPDLKPYLEKTYGVIVYQEQIMQIASKMAGFSLGEADLLRRAVSKKQKDVL 692

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F SGA  +G  +  A  +++L+ +FA+YGFN+SHA AY+ I+YQ A++K +YP+
Sbjct: 693  DRERAHFASGAVSSGYDEKTAQEVYDLIVRFANYGFNRSHAVAYSFIAYQLAYLKANYPL 752

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F+AA ++    N +K+ ++ ++ +   + ++PPS+N+    F+     I YSLAA+KG+
Sbjct: 753  NFMAALLSQASGNEDKLAQYIRELKHLGLTLLPPSINSSGYSFQAESGGIRYSLAAVKGI 812

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G +  + +  A   K F+ L DFC RV +K   R++LE+ V +G+ D FG  R  LL +L
Sbjct: 813  GASVLKDVFHARRQKRFEDLFDFCIRVPAKSATRKILEAFVHSGSFDEFGEDRAVLLATL 872

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D   ++A+ V+ +  +  E+ F+ ++  FS K    +        + + E+  LG Y S 
Sbjct: 873  DIAIEHAELVKPDE-SGQEDFFSEDE--FSIKPKYAENDPIRIEDKLQYEKEYLGLYLSD 929

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            HP+ VY      +G+    +      G+  IR AA +   ++ +T+KG  + +++ ++ +
Sbjct: 930  HPVSVYAASFASLGVT---QLADMEPGSRNIRTAAYLSEVKKIRTKKGEAMAFLSLNDQS 986

Query: 1025 KEYEANFFP 1033
             E EA  FP
Sbjct: 987  GEMEAVVFP 995


>gi|118617195|ref|YP_905527.1| DNA polymerase III subunit alpha [Mycobacterium ulcerans Agy99]
 gi|118569305|gb|ABL04056.1| DNA polymerase III, alpha subunit, DnaE1 [Mycobacterium ulcerans
            Agy99]
          Length = 1180

 Score =  703 bits (1815), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/1062 (29%), Positives = 514/1062 (48%), Gaps = 41/1062 (3%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              S SFVHL  H+ YS+L+GA  +  +L ++     PAI +TD  N+F A EF   A  A
Sbjct: 4    SSSRSFVHLHNHTEYSMLDGAAKITPMLAEVERLDMPAIGMTDHGNMFGASEFYNSATKA 63

Query: 66   GIQPIIGCQLDIDMQDNLK----------MTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            G++PIIG +  +                       +   +   + ++   A G + L +L
Sbjct: 64   GVKPIIGVEAYVAPGSRFDTRRITWGDPSQKGDDVSGSGSYTHLTMVAENATGLRNLFKL 123

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S      Q  +  R+    + E   EG+I  TG  SG +         + A +    ++
Sbjct: 124  SSLASFEGQLGKWSRMDAELVAE-HAEGIIATTGCPSGEVQTRLRLGHDREALESAAKWR 182

Query: 176  KLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            ++FG D  ++ L  H    +R     ++++    ++P +ATN+  +++ +    H+ L+ 
Sbjct: 183  EIFGADNYFLELMDHGLSIERRVREGLIEIGRKLDIPPLATNDCHYVTRDAAHNHEALLC 242

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            V     +S  +R +   D Y    +  +    D          +                
Sbjct: 243  VQTGKTLSDPNRFKFDGDGYYLKSAAEMRQLWDDDIPGACDSTLLIAERVQSYADVWTPR 302

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
              +         +  + L ++ +AGL  R   G        QDY  R ++E+ VI    F
Sbjct: 303  DRMPIFPVPEGHDPASWLHHEVMAGLRRRFPSGL------GQDYIDRAEYEIKVICDKGF 356

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFLIVAD I +A+  +I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R 
Sbjct: 357  PSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERP 416

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQ 471
            S PD DIDF   RR E++RY  +K+G +RVAQ+ITFG+++ KAAL+D  R    Q  ++ 
Sbjct: 417  SAPDIDIDFDDRRRGEMVRYAADKWGQDRVAQVITFGTIKTKAALKDSARIHYGQPGFAI 476

Query: 472  VDRLCKL-IPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DR+ K   P   A  +          +   + +  R     DP V  + + ++ LEGL 
Sbjct: 477  ADRITKALPPPIMAKDIPLSGITDPAHERFKEAAEVRGLIETDPDVRTIYQTARGLEGLI 536

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+ LT++
Sbjct: 537  RNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTII 596

Query: 583  QKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              +++   A RG+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQP    
Sbjct: 597  GDAIENIEANRGIDLDLESLPLDDKPTYELLGRGETLGVFQLDGGPMRDLLRRMQPTEFN 656

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQV 695
            DI+A+++LYRPGP+       Y +RKN ++ +  IHP ++      L ET G+I+YQEQ+
Sbjct: 657  DIVAVLALYRPGPMGMNAHNDYADRKNNRQAVKPIHPELEEPLREILSETYGLIVYQEQI 716

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M IAQ ++ Y++ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++ +  
Sbjct: 717  MFIAQKVASYTMGKADALRKAMGKKKLEVLEAEYKGFYEGMTANGFSEKAVKALWDTILP 776

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  I 
Sbjct: 777  FAGYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGIT 836

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874
            ++PP VN   V+F      I + L A++ VG      ++        F    D+ +++D 
Sbjct: 837  VLPPDVNESLVNFASVGQDIRFGLGAVRNVGANVVGSLIGTRSGKGKFTDFSDYLNKIDI 896

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
               N++V ESL+ AGA D  G+ R  L     +        +K       ++F       
Sbjct: 897  SACNKKVTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGSDSGA 956

Query: 935  SDKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIR 991
                T++          +   E+ +LG Y SGHPL+    +L           +      
Sbjct: 957  DAVFTIKVPEDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLATQVDTAIPAILDGDVSN 1016

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +R+  ++ +  ++  + G         +     E  FFP
Sbjct: 1017 DAQVRVGGILAAVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1058


>gi|325300436|ref|YP_004260353.1| DNA polymerase III, alpha subunit [Bacteroides salanitronis DSM
            18170]
 gi|324319989|gb|ADY37880.1| DNA polymerase III, alpha subunit [Bacteroides salanitronis DSM
            18170]
          Length = 1265

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1147 (31%), Positives = 573/1147 (49%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YS+L+G  S++ ++DK  A+    IAITD  ++F   EF           
Sbjct: 3    DFVHLHVHTQYSILDGQASISRLVDKAMANGMKGIAITDHGDMFGIKEFFNYVNKKNGGT 62

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC   I        +PIIGC++ +      +
Sbjct: 63   NGEIKDLKKKVAALESGKVESENPEADIAACKEQIEVAKKKLFKPIIGCEMYVA---RNR 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            +T++   P      +++L    +GY  LI+LVS+ +         R   + L++   EGL
Sbjct: 120  LTDKNGKPDQGGYHLIVLAKNLKGYHNLIKLVSKAWTQG-FYMRPRTDRAELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG-----------YD 193
            I+ +    G + R         AE+ +  +K LFG+  Y+ LQRH+              
Sbjct: 178  IVCSACLGGEVPRRITAGQFAEAEEAIQWYKNLFGEDYYLELQRHKATVPRANHETYKLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                 ++++ A  +++ LV TN+  F+ EE+ EAHD L+ ++ S  +   +R   T   +
Sbjct: 238  EVVNKKLIEYARKYDIKLVCTNDVHFVDEENAEAHDRLICLSTSKDLDDPNRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K R EM +IFSD+PEAL NT E+  +  F    HAPI+P F   E    ++E       
Sbjct: 298  MKTREEMNAIFSDVPEALVNTCEVCDKVEFYSIDHAPIMPTFSIPEEFGTEEEYRKRYSE 357

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L   A  G   R    
Sbjct: 358  KDLFDEFTQDENGNVVMSEADAKAKIERLGGYEKLYRIKLEADYLAKLAYEGARRRYGAD 417

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                     + ++R+ FEL+++  M F GYFLIV DFI  A+   ++ VGPGRGS AGS 
Sbjct: 418  L------TDEVKERIKFELHIMKTMGFPGYFLIVQDFIAAARNQLDVSVGPGRGSAAGSA 471

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R  V+ +V  KYG E+VA 
Sbjct: 472  VAYCLGITQIDPIKYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAH 531

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREA-R 502
            IIT+G++  K A++DV R  ++P S+ DRLCKLIP+           AIA     + A  
Sbjct: 532  IITYGTMATKLAIKDVARVQKLPLSESDRLCKLIPDKIPDKKLNLPNAIAYVPELQAAEV 591

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558
             +DP +   ++ ++ LEG  R+   HA G +I    ++  VP+      +    + VTQ+
Sbjct: 592  SSDPVLRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE+ GLIK DFLGLKTL++++++++ +   +G+++++  IP DD  TY L     T
Sbjct: 652  EGSVIEETGLIKMDFLGLKTLSIIKEAIENIRHSKGIELNIDEIPIDDPATYQLYGEGQT 711

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  ++P   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+
Sbjct: 712  IGTFQFESAGMQKYLRELEPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPI 771

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  
Sbjct: 772  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGK 831

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG        I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA+M+  + 
Sbjct: 832  KNGHDPKTLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAATMSRNVS 891

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHI-ME 855
            N+ +I K   + +   I+++ P VN   + F V     I + L AIKGVG +  + I +E
Sbjct: 892  NITEITKLMDECKAMGIRVLGPDVNESSMKFSVNYHGDIRFGLGAIKGVGESAVQSILVE 951

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907
               +  F ++ DF  RV+    NR+ +E+L  AG  D F G  R             ++ 
Sbjct: 952  REKNGVFKNIFDFVQRVNLSACNRKNIENLALAGGFDSFSGIKREDFFVKNAKDETFVEI 1011

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E+        +      +   R   E+ ++G Y S HP
Sbjct: 1012 LVRYGNRYQVDKAAAVNSLFGGEQAVEIATPEIVHAPAWSDLERLNKERELVGIYLSAHP 1071

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y  IL  +      +        N  + L  +V   ++  TR G   G     + + 
Sbjct: 1072 LDEYAVILENVCNARMSQLADLTPLQNHDLTLGGVVTGVREGYTRTGKPYGVAKLEDYSG 1131

Query: 1026 EYEANFF 1032
              +  FF
Sbjct: 1132 TADFAFF 1138


>gi|327314343|ref|YP_004329780.1| DNA polymerase III subunit alpha [Prevotella denticola F0289]
 gi|326944718|gb|AEA20603.1| DNA polymerase III, alpha subunit [Prevotella denticola F0289]
          Length = 1239

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/1120 (30%), Positives = 533/1120 (47%), Gaps = 107/1120 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66
             +VHL VH+ YS+L+G   +  ++DK  AD    +A+TD   +F   EFS          
Sbjct: 3    DYVHLHVHTDYSVLDGQSKVTRLVDKAVADGMKGMAVTDHGVMFGIKEFSDYCAKVNKGR 62

Query: 67   -------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                    +P+ GC++ +  +              +   +++L     GY+ LI+LVS+ 
Sbjct: 63   KEKGEAPFKPVFGCEMYVARRTMHDKDKS--MHDNSGYHLIVLAKNYHGYKNLIKLVSKA 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            + +D      R     L++   E LI+ +   +G I      +  + A +    + ++FG
Sbjct: 121  W-VDGYYYKPRTDREQLEKYH-EDLIVCSACIAGEIPSKIIHDDIEGAREACEWYHRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     +++ A  + + ++ TN+  F  +E  E
Sbjct: 179  DDFYLELQRHEVKDPTLVANREAYPLQQKANKVLLRFAEEYGIKVICTNDCHFEDKETAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++ +  +    R R +   + K R EM  +FSD+PEAL NT+EI  +      
Sbjct: 239  AHDHLLCLSTNEDLDDPKRMRYSKQEWFKTRQEMNEVFSDIPEALTNTLEILDKVEIYSI 298

Query: 287  VHAPILPRFIEKECDDIQKE---------------------------------------- 306
             H PI+P F   E    ++E                                        
Sbjct: 299  DHGPIMPFFPIPEDFGTEEEWRKKFSEDDLYREFTTDENGEHPLPAEEGQKVIRRLGGYE 358

Query: 307  -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E + L   A  G       G +     + + +  + FEL+V+  M F GYFLI
Sbjct: 359  KIYRIKFEADYLAKLAYDGA------GKLYGDPLSDEVKSHIRFELHVMKTMGFPGYFLI 412

Query: 360  VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V DFI  A++   + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD 
Sbjct: 413  VQDFINAAREKLGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R +V+++V +KYGHE  A IIT+ ++  K ++RDV R  ++     + LCK 
Sbjct: 473  DTDFDDDGRGKVLQWVMDKYGHENCAHIITYSTMATKNSIRDVARVEKLSLDVSNGLCKA 532

Query: 479  IPNDPAHPVSLQ---AIADDSRFREA-RLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP+     + +    AI    R +EA    D      ++ ++ LEG  R    HA G +I
Sbjct: 533  IPDRLPDGMKMNLTNAIKCTPRLQEAEVSEDARERNTIKYAKMLEGTVRGTGIHACGFII 592

Query: 535  GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               P+   VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ L+++   +
Sbjct: 593  CRNPIDDWVPVSTASDPDFPEKKVPVTQYDGHVIESTGLIKMDFLGLKTLSELKEACKVI 652

Query: 590  AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             Q     VDL  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +
Sbjct: 653  RQTTGDVVDLDNIPIDDELTYQLYQRGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNA 712

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RKN    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  
Sbjct: 713  LYRPGPMDYIPDFIKRKNDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E+D LR+AMGKK K  +D+ K +FI    +NG    +   I+    KFA Y FNKSHA  
Sbjct: 773  ESDALRKAMGKKKKAIVDQMKPKFIKQGQENGHDPQVLEKIWSDWEKFASYAFNKSHATC 832

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ ++YQTA++K HYP E++AA MT     + +I K  ++ +   I  + P +N   + F
Sbjct: 833  YSWVAYQTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKAMKITTLGPDINESQIGF 892

Query: 829  KVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V     I + LAAIKG+G + A  I+     +  +  + DF  RVD   +NR+  ESL 
Sbjct: 893  GVNSRGEIRFGLAAIKGMGASAAESIVREREKNGLYKDIYDFAERVDISNVNRKAFESLA 952

Query: 887  FAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            ++G  D FG  R Q           LD I +Y Q  +  +  +  ++F            
Sbjct: 953  YSGGFDSFGLQREQYFAETGKGSLFLDTIVRYGQLYQAEKAQQQNSLFGGMDAVEVMHPV 1012

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN------ 993
              K     +  +   E+ ++G Y S HPLD Y  +L  M      +              
Sbjct: 1013 APKTEKWPAIEKLNKERELVGIYLSAHPLDEYSVVLDNMCNTHCSQIGRNADMEVLSKVD 1072

Query: 994  NIRLAAMVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFF 1032
             +    +V +  ++ + + G   G+VT  +     E   F
Sbjct: 1073 EVTFGGIVTAVSERFSQKTGKPFGFVTIEDFKGAGELALF 1112


>gi|297626372|ref|YP_003688135.1| DNA polymerase III alpha subunit [Propionibacterium freudenreichii
            subsp. shermanii CIRM-BIA1]
 gi|296922137|emb|CBL56705.1| DNA polymerase III alpha subunit [Propionibacterium freudenreichii
            subsp. shermanii CIRM-BIA1]
          Length = 1190

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/1080 (32%), Positives = 550/1080 (50%), Gaps = 62/1080 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S +F HL VH+ YS+L+GA S + +  ++A    PA+A+TD  N+F A EF Q A  
Sbjct: 1    MA-SKNFAHLHVHTEYSMLDGAASNDKLFAEVARQGMPAVAMTDHGNMFGAYEFYQTAKK 59

Query: 65   AG------IQPIIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVL 101
                    ++PIIG +  +     L  +                  +  +       + +
Sbjct: 60   YDGEQNPLVKPIIGIEAYVAPSTRLSRSPEFWGNRRDTGSPDTEGGKDVSGGGRYTHMTM 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
            L + A G   L +L S     +      R+    + +  +EG+I  TG  SG +      
Sbjct: 120  LAANATGLHNLFKLSSLAS-YEGYYMKPRMDRELIAKY-SEGIIGSTGCPSGEVQTRLRL 177

Query: 162  NSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLF 219
               + A +    ++ + G +  Y  L  H    +    + +++LA   +LPL+ATN+S +
Sbjct: 178  GQFEEACEAAAAYQDILGKENYYCELMDHGVDIEHQVRADLLRLAKRLKLPLLATNDSHY 237

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            ++E+  + HD L+ +         DR R     +Y+K  +EM ++F  L EA +NT+ IA
Sbjct: 238  VTEDQADDHDNLLCIGVGRNKDDPDRFRFNGSGYYIKTAAEMRALFPGLEEAADNTLAIA 297

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
             R     +V + +    + +      + +E+ LR K   GL+             +    
Sbjct: 298  ERIESYEEVFSYVDR--MPQFDVPAGETQESWLRKKVKIGLKKHYGDH------PSDAVM 349

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +R++ EL VI  + FS YFL+V+D    A+K  +PVGPGRGS AGS+ AY   I  IDPL
Sbjct: 350  ERVETELKVIEPLGFSSYFLVVSDICDAARKMGVPVGPGRGSAAGSIIAYLTDIIAIDPL 409

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               LLFERFLNP+R++ PD D+DF   +RD+VI YV +KYG E  +Q+ TF  ++AKAA+
Sbjct: 410  EHGLLFERFLNPERVNPPDIDLDFDDRQRDKVIDYVTHKYGEEYTSQVNTFNKIKAKAAV 469

Query: 459  RDVGRALQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVD 509
            +D  R L  P+S  DR+ K +P D     V L  + D+S         FR    +DP V 
Sbjct: 470  KDANRILGYPFSLGDRITKAMPPDVMGKGVPLNKLFDESNGRYSEGQEFRNLYNSDPDVK 529

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            R+++    +EGL R +  HA   ++    L  LVPM++  +  + +  F    +E+ GL+
Sbjct: 530  RVVDTGMGIEGLIRGSGVHACAFILSSEKLLNLVPMHKRDKDGMIIAGFAYPQLEEMGLM 589

Query: 570  KFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K DFLGL+ L ++   +  + + RG  VDL  +P DD  TY L+    TLG+FQL+   M
Sbjct: 590  KMDFLGLRNLGIMDHCVKNIKRNRGEDVDLQKLPLDDAATYELMARGDTLGVFQLDGGAM 649

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLI----DPML 682
            R  L  M P C +DIIA+++LYRPGP+  +  + Y +RKNG+  IV IHP +    D +L
Sbjct: 650  RSLLRQMGPTCFDDIIAVIALYRPGPMGANAHIEYADRKNGRRPIVPIHPELKDDLDEIL 709

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
              T  +I+YQEQ+M IA+ L+GY+L  AD+LRRAMGKK K  +D+  + F  G   NG S
Sbjct: 710  APTYHLIVYQEQIMAIARKLAGYTLGGADLLRRAMGKKKKYILDENFKPFQKGMRDNGYS 769

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
                  +++++  FA Y FNKSHA  YA++SY TA++K +YP E+ AA +T   D+ +K+
Sbjct: 770  DESMQALWDVMVPFAGYAFNKSHATGYALVSYWTAYLKANYPAEYGAALLTSVGDDKDKM 829

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KP 861
              +  D R   I+++ P VN    +F      I + L AI+ VG +    I+EA  D  P
Sbjct: 830  ALYLSDMRAQRIKVLAPDVNASEKEFTAVGEDIRFGLGAIRNVGDSVVGGIVEARTDHGP 889

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
                 +F   V     N+R +ESL+ AGA D  G+SR  L+   +        +++N+ N
Sbjct: 890  AHDFFEFLDNVPLSVCNKRCIESLIKAGAFDSMGHSRRALMDVFETAVDGVIDLKRNQAN 949

Query: 922  KHENIFAHEKGTFSDKIT-----LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL- 975
              +++F    G  ++        +      +   +   E+ +LG Y S HPL   + +L 
Sbjct: 950  GQDDLFGDLGGGDAESDPAMNHTVPDIPDWDKRTKLAFEREMLGLYVSDHPLRGLEHVLS 1009

Query: 976  --RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              R +G+    E  A   G+   +  M+   Q+K+T+KG+    +   +     +   FP
Sbjct: 1010 AERTIGLGQIAEQGAEADGHVEVICGMITQVQRKQTKKGAFWAIIDVEDLDASMQVLIFP 1069


>gi|153808691|ref|ZP_01961359.1| hypothetical protein BACCAC_02990 [Bacteroides caccae ATCC 43185]
 gi|149128517|gb|EDM19735.1| hypothetical protein BACCAC_02990 [Bacteroides caccae ATCC 43185]
          Length = 1268

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1142 (31%), Positives = 565/1142 (49%), Gaps = 124/1142 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVARLVDKAMQNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC A I        +PIIGC++ +       
Sbjct: 63   KGEIKDLKKRLVGIEAGSIECEDKEAEVAACKAKIVEAENKLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +      +   +++L     GY  LI+LVS  +         R   S L++   EGL
Sbjct: 120  MDLKEGKQDQSGYHLIVLAKNETGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            ++ +    G I +    +    AE+ +  +K LFGD  Y+ +QRH+              
Sbjct: 178  MVCSACLGGEIPKRITNDQFAEAEEAIQWYKNLFGDDFYLEMQRHKATVPRANHECYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ +    + LV TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VKVNKYLMEYSKKFNVKLVCTNDVHFVDEENAEAHDRLICLSTGKDMDDPTRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            +K R EM  +F+D+PEAL NT+E+  +  +    HAPI+P F   E    ++E   +   
Sbjct: 298  MKTREEMNELFADVPEALSNTLELLDKVEYYSIDHAPIMPTFAIPEDFGTEEEYRQKFTE 357

Query: 314  KA-----------------VAGLEVRLAQGAIAKGYH----------------------- 333
            K                    G       G   K Y                        
Sbjct: 358  KDLYDEFTQDEHGNVVLSEEDGKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417

Query: 334  -AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
              ++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS  AY L 
Sbjct: 418  LTEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRL KL+P+           AI      + A  + DP V
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIE 564
               ++ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R +++D+  I  +D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRSLEIDVDQIDINDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861
            K   + +   IQ + P VN   + F V  D  I + L A+KGVG    + IME    + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVQSIMEERKKNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q   +       L+ + +Y  
Sbjct: 958  FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAANSKGELFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              + ++     ++F  E         + +     +   R   E+ ++G Y S HPLD + 
Sbjct: 1018 RYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077

Query: 973  PILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +      E    A + G  I +  +V S ++  ++ G+  G     + +   E  
Sbjct: 1078 IVLEHVCNTRMSELEDKAALAGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137

Query: 1031 FF 1032
            F+
Sbjct: 1138 FW 1139


>gi|150004438|ref|YP_001299182.1| DNA polymerase III alpha subunit [Bacteroides vulgatus ATCC 8482]
 gi|294775512|ref|ZP_06741024.1| putative DNA polymerase III subunit alpha [Bacteroides vulgatus
            PC510]
 gi|149932862|gb|ABR39560.1| DNA polymerase III alpha subunit [Bacteroides vulgatus ATCC 8482]
 gi|294450657|gb|EFG19145.1| putative DNA polymerase III subunit alpha [Bacteroides vulgatus
            PC510]
          Length = 1265

 Score =  703 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/1147 (30%), Positives = 572/1147 (49%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---------- 59
             FVHL VH+ YS+L+G  S+  ++DK  AD    IA+TD  ++F   EF           
Sbjct: 3    DFVHLHVHTQYSILDGQASIPRLVDKAMADGMKGIAVTDHGDMFGIKEFFNYVNKKNSST 62

Query: 60   -----------------------------------QKACAAGIQPIIGCQLDIDMQDNLK 84
                                               + A     +PI GC++ +      +
Sbjct: 63   NSEIKDLKKRIAGLEKGTVECDNPETELVACKEKLETAKKKLFKPIFGCEMYVA---RRR 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            + N+   P  +   +V+L    +GY  LI+LVS+ +  +      R     L++   EGL
Sbjct: 120  LFNKEGKPDQSGYHLVVLAKNEKGYHNLIKLVSKAWT-EGFYMRPRTDRVELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG-----------YD 193
            I+ T   +G + R       + AE+ +  +K++FGD  Y+ LQRH+              
Sbjct: 178  IVCTACIAGEVPRNIIAGKYEEAEEAIQWYKRVFGDDFYLELQRHKATVPRANHEAYKLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +    ++++ +    + LV TN+  F+ EE+ EAHD L+ ++    +   +R   +   +
Sbjct: 238  QIANEKLIEYSKKFNVKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYSKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K R+EM  +F+D+PEAL NTV+I  +  F    HAPI+P F   E    ++        
Sbjct: 298  MKTRAEMNEVFADVPEALSNTVDICDQVEFYSIDHAPIMPTFAIPEDFGTEEGYRKKYTE 357

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L+  A+ G   R  + 
Sbjct: 358  KDLFDEFTQDENGNVVMSEEAAKAKIEKLGGYDKLYRIKLEADYLKKLALEGAHKRYGE- 416

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                   +++ ++R+ FEL+++  M F GYFLIV DFI+ A++  ++ VGPGRGS AGS 
Sbjct: 417  -----VLSEEVQERIKFELHIMKTMGFPGYFLIVQDFIRAAREELDVSVGPGRGSAAGSA 471

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+ + LLFERFLNPDR+S+PD D+DF  D R  V+ +V  KYG E+VA 
Sbjct: 472  VAYCLGITKIDPIAYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAH 531

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREA-R 502
            IIT+G++  K A++DV R  ++P S+ DRLCKL+P+           AIA     + A  
Sbjct: 532  IITYGTMATKLAIKDVARVQKLPLSESDRLCKLVPDKIPDKKMNLPNAIAYVPELQAAEV 591

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558
              DP +   ++ ++ LEG  R+   HA G +I    ++  VP+      +    + VTQ+
Sbjct: 592  SPDPILRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL++++++++ +   +G+ +D+  +   D  TY L +   T
Sbjct: 652  EGSVIEDTGLIKMDFLGLKTLSIIKEAIENIKHSKGIILDIDEVDISDPPTYALYSEGRT 711

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  ++P   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+
Sbjct: 712  IGTFQFESAGMQKYLRELEPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPI 771

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  
Sbjct: 772  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGR 831

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA+M+  + 
Sbjct: 832  KNGHDPKVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAATMSRNIS 891

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA 856
            N+ +I K   +++   I    P VN   + F V     I + L AIKGVG +  + I+E 
Sbjct: 892  NITEITKLMDESKATGIMTKGPDVNESYLKFSVNRKGDIRFGLGAIKGVGESAVQSILEE 951

Query: 857  SA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907
               +  +  + DF  RV+    NR+ +E+L  AGA D F G  R              + 
Sbjct: 952  RERNGEYKDIFDFVQRVNLSACNRKNIENLALAGAFDSFTGIKREDFFVKNAKDETFTEV 1011

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E         +          R   E+ ++G Y S HP
Sbjct: 1012 LVRYGNKYQMDKAAAANSLFGGENQVDIATPEIIPSPAWGDLERLNKERDLVGIYLSAHP 1071

Query: 968  LDVYKPILRKMGIKGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y  IL  +      E      ++  ++ +  +V + ++  T+ G   G     + + 
Sbjct: 1072 LDEYAVILENVCNVHMAELADLTPLQNRDLTMGGIVTAVREGYTKTGKPYGIAKVEDYSG 1131

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1132 SAEFAFF 1138


>gi|262369729|ref|ZP_06063057.1| DNA polymerase subunit III [Acinetobacter johnsonii SH046]
 gi|262315797|gb|EEY96836.1| DNA polymerase subunit III [Acinetobacter johnsonii SH046]
          Length = 1189

 Score =  703 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1037 (37%), Positives = 580/1037 (55%), Gaps = 47/1037 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ +S+ E  + + +++    A+  PA+AITD +NL +A++F  K    GI+PI
Sbjct: 3    FVHLGIHTEFSITESIVRIPDLVKAAKAEGMPALAITDLSNLHAAVKFYGKCLDNGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++  ++                + LL  +  G++ L ELVS  ++  Q      
Sbjct: 63   MGSEVRLNDAEH---------------RVTLLAMSNVGWRNLTELVSEGFIRGQQLDIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E   + LI L G     + +    ++ Q AE  L  +   FG+R+Y+ L R  
Sbjct: 108  VAKDWILEQNHD-LIALLG-MRSDVGKMLCTSNPQKAEPLLEEWIAKFGNRVYLALCRTE 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     + ++LA  + + +VA N+  F+ E D+EAH+  + +A   V+    RP+  
Sbjct: 166  RSGEDDFNYEALKLAKKYNIGVVAHNDVHFMKEIDFEAHEARVCIADGYVLGDNRRPKDY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ Y K+  +M  +F+D+P A+ENT +IA+RC+  LQ+    LP +   E        +
Sbjct: 226  SPEQYFKSGQQMAELFADIPSAIENTYQIAKRCNVTLQLGKYFLPDYPIPEG----HTID 281

Query: 309  NELRNKAVAGLEVRLAQGAIA------KGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE RL                 ++Y  RL++E+  I +M F GYFLIV D
Sbjct: 282  TYFAHLSKEGLEERLDFLYPPETRDEYWPEKRKEYDDRLEYEIGTILKMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWSKGNGVPVGPGRGSGAGSLVAYSLKITDLDPLPYGLLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG + V+QI TFG++ AK A+RDV R L   Y   DR+ K+IP  
Sbjct: 402  CIAGRDRVIDYVARTYGRDAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMIPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537
            P      ++I  + + ++      + D      + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGLSLEESIEAEPQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVISPT 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV--- 594
             ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +R     
Sbjct: 522  KITDFSAVLCDADGTGRVAQYDKDDVESAGLVKFDFLGLRNLTVIEDAVKNINKRIQLDV 581

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D++ IP DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  PLDIAFIPLDDKDAYLIFANANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +   +    +   +HPL++ +L+ T G+++YQEQVMQ AQ  +GYSL  AD+LR
Sbjct: 642  MDLIPDFI-HRMHGGEFEYLHPLLEGVLEPTYGIMVYQEQVMQAAQYCAGYSLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ F  GA+K  I +  A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRQIFTEGAAKKDIDQATANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            QTAW+K HYP EFLAA M+ EM N + +     D R  +I+++PPSVN     F   D++
Sbjct: 761  QTAWLKAHYPAEFLAAVMSSEMQNTDNVVFLIDDCRHNDIEVLPPSVNMSIYQFHASDDK 820

Query: 835  -IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L AIKGVG    + ++++   D P+  L DFC R+D KK+N+R LE+L+ +GALD
Sbjct: 821  TIVYGLGAIKGVGEAAMQSVIDSRIQDGPYRDLFDFCHRIDLKKINKRTLEALIRSGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A     NR     ++F   +     +   +     +  VR 
Sbjct: 881  CLGIERSSLMAQLPEAVQAADQARSNRETGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y +GHP+DVY+  L+        E   T RG     A +VV          
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRTELKAFIPNKINELTPTRRGVTTVFAGLVVDVANFP---- 994

Query: 1013 SRIGWVTFSEPAKEYEA 1029
            +R+  VT  +     E 
Sbjct: 995  NRMM-VTLDDGTSRIEV 1010


>gi|300784068|ref|YP_003764359.1| DNA polymerase III subunit alpha [Amycolatopsis mediterranei U32]
 gi|299793582|gb|ADJ43957.1| DNA polymerase III subunit alpha [Amycolatopsis mediterranei U32]
          Length = 1195

 Score =  703 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/1080 (30%), Positives = 525/1080 (48%), Gaps = 60/1080 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL VH+ YS+L+GA  +  +  + A    PA+ +TD  N++   EF Q++  
Sbjct: 1    MSND-SFVHLHVHTEYSMLDGAAKIAPLFAEAARLGMPAVGMTDHGNMYGGDEFYQQSKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVLLVSTAE 107
             G++PIIG +  I  +                           +       + +L   A 
Sbjct: 60   HGLKPIIGIEAYIAPESRFHKKPVFWGQSNQRGSDELGEGGDVSGAGAYTHMTMLAQNAT 119

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            G + L +L S   +     +  R+    + E  + G+I  TG  SG +         + A
Sbjct: 120  GLRNLFKLSSLASMQ-GYYRKPRMDRELIAENHS-GIIATTGCPSGEVQTRLRLGQKEAA 177

Query: 168  EKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
             +    +K +FG D  ++ L  H    +R     ++++    +L  +ATN+S +++++  
Sbjct: 178  IQAASDYKDIFGADNFFLELMDHGLPIERSVREGLLEVGRLLDLKPIATNDSHYVTKDQA 237

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            + H  L+ V     ++   R +   D Y    +  +  + D          +        
Sbjct: 238  DTHSALLCVQAGKTLNDPTRFKFDGDGYYLKSAAEMREYWDKEVPGAADTTLMIAERVES 297

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                      +         ++   LR +   GL+ R   G        + Y +R++ EL
Sbjct: 298  YEDVYSHKDRLPFFEVPEGYDQGGWLREEVQRGLKWRFPDGVPD-----EYYNERIEIEL 352

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            +VI    F  YFLIVAD I +A+K  I VGPGRGS AGS+ AY L IT++DP+   LLFE
Sbjct: 353  DVIIGKGFPAYFLIVADLISYARKVGIRVGPGRGSAAGSLVAYVLGITNLDPIPQKLLFE 412

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+SMPD DIDF   RR E+IRY  +KYG ++VAQ+ITFG+++ KAA++D  R  
Sbjct: 413  RFLNPERVSMPDIDIDFDDRRRGEMIRYATDKYGSDKVAQVITFGTIKTKAAIKDSARVH 472

Query: 466  --QMPYSQVDRLCKL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEI 514
              Q  Y+  D++ K   P   A  +          +   + +  R     D     + E 
Sbjct: 473  FGQPGYAIADKISKALPPPIMAKDIPLSGIVDNKHERYGEAAEVRALVETDDECKTIFET 532

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            ++ LEGL R+A  HA  +++   PL+  +P+++       +T ++    E  GL+K DFL
Sbjct: 533  ARGLEGLIRNAGVHACAVIMSCDPLTDAIPLWQRD-DGSIITGWDYPSCEAIGLLKMDFL 591

Query: 575  GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+ LT++  ++D +   RGV VDL  +  DD ETY LL    TLG+FQL+   MR  L 
Sbjct: 592  GLRNLTVIGDAIDNIKANRGVDVDLDTLGVDDPETYKLLARGDTLGVFQLDGGPMRDLLR 651

Query: 634  GMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQG 687
             M+P   +DI+A+ +LYRPGP+       Y +RKN ++K+  IHP +D      L +T G
Sbjct: 652  RMEPTVFDDIVAVGALYRPGPMGMNAHNDYADRKNNRQKVKPIHPELDEPLREILADTYG 711

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA-----SKNGIS 742
            +I+YQEQ+M I Q ++GY++  ADVLRRAMGKK KE +DK+ E F +G         G S
Sbjct: 712  LIVYQEQIMHIGQKVAGYTMGRADVLRRAMGKKKKEVLDKEYEGFEAGMRASDLRPGGFS 771

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
                  +++ +  FA Y FNKSHAAAY +ISY TA++K ++  E++AA +T   DN +K 
Sbjct: 772  PEAIKALWDTILPFAGYAFNKSHAAAYGLISYWTAYLKANFRAEYMAALLTSVGDNKDKS 831

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KP 861
              +  + R+  I+++PP VN   + F    + I + L A++ VG      I++   +   
Sbjct: 832  AVYLSECRRLGIKVLPPDVNESALRFAAVGDDIRFGLGAVRNVGANVVESIIKTREEKGK 891

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + S  DF  + +    N+RV+ESL+ AG  D  G++R+ ++Q  ++  +    +++    
Sbjct: 892  YASFTDFLDKSELVACNKRVIESLIKAGGFDSLGHTRLSMIQVHEDAVEAVVPLKRQEAM 951

Query: 922  KHENIFAHEKGTFSDKITLEKF-------SVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
               ++F           +                      E+ +LG Y S HPLD  + I
Sbjct: 952  GQFDLFGFGGDEGEAAPSSSPLAHLKFGEEEYPRKQLLAYEREMLGLYVSAHPLDGAERI 1011

Query: 975  LRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            LRK   K     +        + ++ ++ S +++  +KG      T  +     E  FFP
Sbjct: 1012 LRKHAPKPIASILNDPPKEGELVISGLITSLERRVNKKGEPWAICTVEDMDASLEVLFFP 1071


>gi|298483654|ref|ZP_07001829.1| DNA polymerase III, alpha subunit [Bacteroides sp. D22]
 gi|298270224|gb|EFI11810.1| DNA polymerase III, alpha subunit [Bacteroides sp. D22]
          Length = 1268

 Score =  703 bits (1813), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1142 (31%), Positives = 564/1142 (49%), Gaps = 124/1142 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVARLVDKAMQNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC A I        +P+IGC++ +       
Sbjct: 63   KGEVKDLKKRIAGIEAGTIECADKEAEIAACKAKIVEAENKLFKPVIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVS  +         R   S L++   EGL
Sbjct: 120  MDLKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+              
Sbjct: 178  IVCSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ A    + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKYLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK--------------- 298
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P F                  
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357

Query: 299  -----------ECDDIQKEEENELRNKAVAGLEV---------------RLAQGAIAKGY 332
                         + +  EE+ + + K + G +                      I    
Sbjct: 358  KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
             +++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS  AY L 
Sbjct: 418  LSEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRL KL+P+           AI      + A  + DP V
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIE 564
               ++ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R V+VD+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDICDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861
            K   + +   IQ + P VN   + F V  D  I + L A+KGVG      IME    + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVHSIMEERSKNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              + ++     ++F  E         + +     +   R   E+ ++G Y S HPLD + 
Sbjct: 1018 RYQADKAAAFNSLFGGENVIDVATPEIPQGVERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077

Query: 973  PILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +      +        G  I +  +V S ++  ++ G+  G     + +   E  
Sbjct: 1078 IVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137

Query: 1031 FF 1032
            F+
Sbjct: 1138 FW 1139


>gi|254882838|ref|ZP_05255548.1| DNA polymerase III alpha subunit [Bacteroides sp. 4_3_47FAA]
 gi|319643401|ref|ZP_07998027.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_1_40A]
 gi|254835631|gb|EET15940.1| DNA polymerase III alpha subunit [Bacteroides sp. 4_3_47FAA]
 gi|317385030|gb|EFV65983.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_1_40A]
          Length = 1265

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/1147 (30%), Positives = 572/1147 (49%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---------- 59
             FVHL VH+ YS+L+G  S+  ++DK  AD    IA+TD  ++F   EF           
Sbjct: 3    DFVHLHVHTQYSILDGQASIPRLVDKAMADGMKGIAVTDHGDMFGIKEFFNYVNKKNSST 62

Query: 60   -----------------------------------QKACAAGIQPIIGCQLDIDMQDNLK 84
                                               + A     +PI GC++ +      +
Sbjct: 63   NSEIKDLKKRIAGLEKGTVECDNPEAELVACKEKLETAKKKLFKPIFGCEMYVA---RRR 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            + N+   P  +   +V+L    +GY  LI+LVS+ +  +      R     L++   EGL
Sbjct: 120  LFNKEGKPDQSGYHLVVLAKNEKGYHNLIKLVSKAWT-EGFYMRPRTDRVELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG-----------YD 193
            I+ T   +G + R       + AE+ +  +K++FGD  Y+ LQRH+              
Sbjct: 178  IVCTACIAGEVPRNIIAGKYEEAEEAIQWYKRVFGDDFYLELQRHKATVPRANHEAYKLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +    ++++ +    + LV TN+  F+ EE+ EAHD L+ ++    +   +R   +   +
Sbjct: 238  QIANEKLIEYSKKFNVKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYSKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K R+EM  +F+D+PEAL NTV+I  +  F    HAPI+P F   E    ++        
Sbjct: 298  MKTRAEMNEVFADVPEALSNTVDICDQVEFYSIDHAPIMPTFAIPEDFGTEEGYRKKYTE 357

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L+  A+ G   R  + 
Sbjct: 358  KDLFDEFTQDENGNVVMSEEAAKAKIEKLGGYDKLYRIKLEADYLKKLALEGAHKRYGE- 416

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                   +++ ++R+ FEL+++  M F GYFLIV DFI+ A++  ++ VGPGRGS AGS 
Sbjct: 417  -----VLSEEVQERIKFELHIMKTMGFPGYFLIVQDFIRAAREELDVSVGPGRGSAAGSA 471

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+ + LLFERFLNPDR+S+PD D+DF  D R  V+ +V  KYG E+VA 
Sbjct: 472  VAYCLGITKIDPIAYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAH 531

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREA-R 502
            IIT+G++  K A++DV R  ++P S+ DRLCKL+P+           AIA     + A  
Sbjct: 532  IITYGTMATKLAIKDVARVQKLPLSESDRLCKLVPDKIPDKKMNLPNAIAYVPELQAAEV 591

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558
              DP +   ++ ++ LEG  R+   HA G +I    ++  VP+      +    + VTQ+
Sbjct: 592  SPDPILRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL++++++++ +   +G+ +D+  +   D  TY L +   T
Sbjct: 652  EGSVIEDTGLIKMDFLGLKTLSIIKEAIENIKHSKGIILDIDEVDISDPPTYALYSEGRT 711

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  ++P   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+
Sbjct: 712  IGTFQFESAGMQKYLRELEPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPI 771

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  
Sbjct: 772  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGR 831

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA+M+  + 
Sbjct: 832  KNGHDPKVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAATMSRNIS 891

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA 856
            N+ +I K   +++   I    P VN   + F V     I + L AIKGVG +  + I+E 
Sbjct: 892  NITEITKLMDESKATGIMTKGPDVNESYLKFSVNRKGDIRFGLGAIKGVGESAVQSILEE 951

Query: 857  SA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907
               +  +  + DF  RV+    NR+ +E+L  AGA D F G  R              + 
Sbjct: 952  RERNGEYKDIFDFVQRVNLSACNRKNIENLALAGAFDSFTGIKREDFFVKNAKDETFTEV 1011

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E         +          R   E+ ++G Y S HP
Sbjct: 1012 LVRYGNKYQMDKAAAANSLFGGENQVDIATPEIIPSPAWGDLERLNKERDLVGIYLSAHP 1071

Query: 968  LDVYKPILRKMGIKGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y  IL  +      E      ++  ++ +  +V + ++  T+ G   G     + + 
Sbjct: 1072 LDEYAVILENVCNVHMAELADLTPLQNRDLTMGGIVTAVREGYTKTGKPYGIAKVEDYSG 1131

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1132 SAEFAFF 1138


>gi|108800053|ref|YP_640250.1| DNA polymerase III subunit alpha [Mycobacterium sp. MCS]
 gi|119869179|ref|YP_939131.1| DNA polymerase III subunit alpha [Mycobacterium sp. KMS]
 gi|126435686|ref|YP_001071377.1| DNA polymerase III subunit alpha [Mycobacterium sp. JLS]
 gi|108770472|gb|ABG09194.1| error-prone DNA polymerase, DnaE-like / DNA polymerase III, alpha
            subunit [Mycobacterium sp. MCS]
 gi|119695268|gb|ABL92341.1| error-prone DNA polymerase, DnaE-like protein [Mycobacterium sp. KMS]
 gi|126235486|gb|ABN98886.1| error-prone DNA polymerase, DnaE-like / DNA polymerase III, alpha
            subunit [Mycobacterium sp. JLS]
          Length = 1191

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/1062 (30%), Positives = 520/1062 (48%), Gaps = 43/1062 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YS+L+GA  +  +L +    + PAI +TD  N+F A EF   A  AGI+PI
Sbjct: 12   FVHLHNHTEYSMLDGAAKVKPMLAEAQRLEMPAIGMTDHGNMFGASEFYNAATDAGIKPI 71

Query: 71   IGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            IG +  I      +                +   +   + ++   A G + L +L S   
Sbjct: 72   IGIEAYIAPASRFETKRVLWGDPSQKSDDVSGSGSYTHMTMVAENATGLRNLFKLSSLAS 131

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179
               Q  +  R+    + E   EG+I  TG  SG +         + A +    ++++FG 
Sbjct: 132  FEGQLGKWSRMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHQREALEAAAKWREIFGP 190

Query: 180  DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
               ++ L  H    +R     ++++     +P +ATN+  +++ +  + H+ L+ +    
Sbjct: 191  QNFFLELMDHGLDIERRVREGLLEIGQKLGIPPLATNDCHYVTRDASQNHEALLCIQTGK 250

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
             +S   R +   D Y    +  +    D          +                  +  
Sbjct: 251  TLSDPTRFKFDGDGYYLKSAAEMRALWDSQVPGACDSTLLIAERVQSYADVWAPRDRMPI 310

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                   ++ + L ++ +AGL+ R +  A++ G    DY +R ++E+ VI    F  YFL
Sbjct: 311  FPVPEGHDQASWLHHEVMAGLKRRFS--AVSGGVVPNDYIERAEYEIKVICDKGFPSYFL 368

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVAD I +AK  +I VGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R S PD 
Sbjct: 369  IVADLINYAKSVDIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERPSAPDI 428

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQVDRLC 476
            DIDF   RR E++RY  NK+G +RVAQ+ITFG+++ KAAL+D  R    Q  ++  DR+ 
Sbjct: 429  DIDFDDRRRGEMLRYAANKWGSDRVAQVITFGTIKTKAALKDSARVHYGQPGFAIADRIT 488

Query: 477  KL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
            K   P   A  +        + +   + +  R     DP V  + E ++ LEGL R+A  
Sbjct: 489  KALPPPIMAKDIPVSGITDPTHERYKEAAEVRALIDTDPDVRTIYETARGLEGLVRNAGV 548

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            HA  +++   PL   +P++R  +    +T ++    E  GL+K DFLGL+ LT++   ++
Sbjct: 549  HACAVIMSSEPLIDAIPLWRRPQDGAVITGWDYPSCEAIGLLKMDFLGLRNLTIIGDCIE 608

Query: 588  FLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             +   RGV +DL  +  DD + Y LL    TLG+FQL+   MR  L  MQP    DI+A+
Sbjct: 609  NIKANRGVDLDLESLALDDPKAYELLGRGDTLGVFQLDGGPMRDLLRRMQPTEFNDIVAV 668

Query: 647  VSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQVMQIAQ 700
            ++LYRPGP+       Y +RKNG++ I  IHP ++  LK    ET G+I+YQEQ+M IAQ
Sbjct: 669  LALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLKEILAETYGLIVYQEQIMFIAQ 728

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
             ++ Y++ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++ +  FA Y 
Sbjct: 729  KVASYTMGKADALRKAMGKKKLEVLEAEYQGFREGMTANGFSEAAVKALWDTILPFAGYA 788

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  I ++PP 
Sbjct: 789  FNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRRLGITVLPPD 848

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNR 879
            VN    +F    + I + L A++ VG      ++   A+   +    D+ +++D    N+
Sbjct: 849  VNESVQNFASVGDDIRFGLGAVRNVGANVVASLVNTRAEKGKYSDFSDYLNKIDIAACNK 908

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-- 937
            +V ESL+ AGA D  G+ R  L     +        +K       ++F    G+ +D   
Sbjct: 909  KVTESLIKAGAFDSLGHPRKGLFLIHTDAVDSVLGTKKAEAMGQFDLFGSGDGSGADAGD 968

Query: 938  ----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIR 991
                I +          +   E+ +LG Y SGHPL+    +L           +      
Sbjct: 969  SAFSIKVPD-EEWEDKHKLALEREMLGLYVSGHPLNGVAHLLANQVDTQIPAILDGDVAN 1027

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               + +  ++ S  ++  + G         +     E  FFP
Sbjct: 1028 DAQVLVGGILASVNRRVNKNGLPWASAQLEDLTGGIEVLFFP 1069


>gi|325135612|gb|EGC58229.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M0579]
          Length = 1144

 Score =  702 bits (1812), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1038 (38%), Positives = 585/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+PI    + I                      +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A    +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSLDDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQKRLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L K
Sbjct: 406  FDVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465

Query: 478  LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S  +A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLSLEKAMETEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + D +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIKNTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  IDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    D +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++  +   +       +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQVEIMV 1014


>gi|300780861|ref|ZP_07090715.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium
            genitalium ATCC 33030]
 gi|300532568|gb|EFK53629.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium
            genitalium ATCC 33030]
          Length = 1185

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/1069 (29%), Positives = 513/1069 (47%), Gaps = 48/1069 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K  SFVHL  H+ +S+L+G   ++ + ++++    PA+ +TD  N+F +  F ++   
Sbjct: 1    MAKKSSFVHLHNHTEFSMLDGMAKVDLLAEEVSRQGMPAVGMTDHGNMFGSNAFYRRMTD 60

Query: 65   AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AGI+PIIG +  +  +                    +         +L   A G + L  
Sbjct: 61   AGIKPIIGIEAYMAPESRFNKKRVLWGTPDQKGDDVSASGAYLHQTMLAENATGLRNLFR 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   +G+I  TG  SG +           A +    +
Sbjct: 121  LSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQYDQALEAAAMW 179

Query: 175  KKLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++G D  ++ L  H    +R     ++++    +LP + TN+  ++ E    AH+ ++
Sbjct: 180  QDIYGKDNYFLELMDHGLTIERRVREDLLRIGEALDLPPLVTNDCHYVLESQAPAHEAML 239

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAP 290
             V     +   DR +     Y    +E +    D       +NT+ +A R     ++ A 
Sbjct: 240  CVQTGKTLLDPDRFKFDGTGYYIKSAEQMRNDWDDMVPDGCDNTLWVAERVGDYGELWAE 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +        +     LR +   GL+ R            +DYR R D+E++VI  
Sbjct: 300  HPHDRMPIATVPEGETPTTWLRKEVHRGLDERF-----EGKEVPEDYRTRADYEIDVIDM 354

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I+ A+   I VGPGRGS AGS+ AYALTIT+IDP+   LLFERFLNP
Sbjct: 355  KGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGSLVAYALTITNIDPMEHGLLFERFLNP 414

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R S PD DIDF   RR E++ Y    +G +++AQ+ITFG+++ K A++D  +       
Sbjct: 415  ERPSAPDIDIDFDDRRRGEMLTYAAENWGEDKIAQVITFGTVKTKQAIKDSAKVNFGQEG 474

Query: 471  QVDR---LCKLIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLE 519
                      L P   A  +             ++ +  R     DP V ++ E ++ LE
Sbjct: 475  FQKADRINAALPPAIMAKDIPLSGITDPEHDRYSEATEVRSMIETDPDVAKIYETARGLE 534

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R A  HA  +++   PL   +PM++       +T ++    E  GL+K DFLGL+ L
Sbjct: 535  GVVRQAGVHACAVIMASVPLMDHIPMWKRPADGALITGWDYPACEAIGLLKMDFLGLRNL 594

Query: 580  TLLQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  +++     RG  +DL  +  D+   Y LL+   TLG+FQL+  GM++ L+ M+P 
Sbjct: 595  TVIGDAIENIEKNRGETIDLEALDTDNEAVYELLSRGDTLGVFQLDGGGMQELLKRMKPT 654

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQ 692
               DI+A ++LYRPGP+  +    Y +RKNG++ I  IHP ++      L ET G+I+YQ
Sbjct: 655  GFNDIVASLALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEPLKEILDETYGLIVYQ 714

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQ+M I+Q ++ Y+  +AD  R+AMGKK  E + ++ E+F  G   NG SK     ++  
Sbjct: 715  EQIMNISQKVANYTAGQADGFRKAMGKKKPEVLAQEYEKFSQGMFDNGYSKAAVDALWGT 774

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  FA Y FNKSHAA YA++SY TA++K +Y  E++AA +T   D  +K   +  D R  
Sbjct: 775  IEPFASYAFNKSHAAGYALVSYWTAYLKANYAAEYMAALLTSVGDKKDKSAIYLADCRHL 834

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSR 871
             I ++PP +N     F   D  I Y LAAI+ VG      IME       F +  D+  +
Sbjct: 835  GISVLPPDINESEETFMAVDKDIRYGLAAIRNVGAEVVESIMESRRTKGAFTNFSDYLDK 894

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---- 927
            +D    N+R+ ESL+ AGA D   + R  LL   D+        +K       ++F    
Sbjct: 895  IDLLPCNKRITESLIKAGAFDSLDHPRKGLLLVSDDAVDSVLTTKKAADKGQFDLFSAFG 954

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              ++ T +  I +          +   E+ +LG Y SGHPLD ++  +         + +
Sbjct: 955  GDQEATNAFSIEVPD-DEWEKKHKLALEREMLGLYVSGHPLDGFEEAIDAQTDTPLPKIL 1013

Query: 988  --ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
                  G+ + +  ++    ++ ++K GS    VT  +    + E   F
Sbjct: 1014 EGEMRHGDEVTIGGIISGVDRRYSKKDGSPWAIVTLEDHHGAQVEVLLF 1062


>gi|308389929|gb|ADO32249.1| putative DNA polymerase III, alpha subunit [Neisseria meningitidis
            alpha710]
          Length = 1144

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1038 (37%), Positives = 586/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+PI    + I                      +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A+   +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSRDDYLIKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L K
Sbjct: 406  FDVDFCQANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465

Query: 478  LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S   A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLSLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + D +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIKNTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  IDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    D +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++  +   +       +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQVEIMV 1014


>gi|237714902|ref|ZP_04545383.1| DNA polymerase III alpha subunit [Bacteroides sp. D1]
 gi|262406830|ref|ZP_06083379.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229445227|gb|EEO51018.1| DNA polymerase III alpha subunit [Bacteroides sp. D1]
 gi|262355533|gb|EEZ04624.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|295084710|emb|CBK66233.1| DNA polymerase III, alpha subunit [Bacteroides xylanisolvens XB1A]
          Length = 1268

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1142 (31%), Positives = 565/1142 (49%), Gaps = 124/1142 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVARLVDKAMQNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   ----------------------------KACAAGI--------QPIIGCQLDIDMQDNLK 84
                                         AC A I        +P+IGC++ +       
Sbjct: 63   KGEVKDLKKRIAGIEAGTIECADKEAEIAACKAKIVEAENKLFKPVIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVS  +         R   S L++   EGL
Sbjct: 120  MDLKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+              
Sbjct: 178  IVCSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ A    + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKYLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK--------------- 298
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P F                  
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357

Query: 299  -----------ECDDIQKEEENELRNKAVAGLEV---------------RLAQGAIAKGY 332
                         + +  EE+ + + K + G +                      I    
Sbjct: 358  KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
             +++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS  AY L 
Sbjct: 418  LSEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRL KL+P+           AI      + A  + DP V
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIE 564
               ++ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R V+VD+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDICDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861
            K   + +   IQ + P VN   + F V  D  I + L A+KGVG      IME    + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVHSIMEERSKNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSV-ENSSVRFENEQRVLGFYFSGHPLDVYK 972
              + ++     ++F  E         + + +   +   R   E+ ++G Y S HPLD + 
Sbjct: 1018 RYQADKAAAFNSLFGGENVIDVATPEIPQGAERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077

Query: 973  PILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +      +        G  I +  +V S ++  ++ G+  G     + +   E  
Sbjct: 1078 IVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137

Query: 1031 FF 1032
            F+
Sbjct: 1138 FW 1139


>gi|84500130|ref|ZP_00998396.1| DNA polymerase III, alpha subunit [Oceanicola batsensis HTCC2597]
 gi|84392064|gb|EAQ04332.1| DNA polymerase III, alpha subunit [Oceanicola batsensis HTCC2597]
          Length = 1134

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 484/1025 (47%), Positives = 655/1025 (63%), Gaps = 51/1025 (4%)

Query: 41   QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
             PA+A+TDTNN+FSALEFS  A   GIQPIIGCQ+D+   D       G+ P    P +V
Sbjct: 1    MPAVAVTDTNNMFSALEFSVTASGEGIQPIIGCQVDLMYLDRQ----PGEKPKAPAP-VV 55

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            LL  +  GY+ L+ L S +YL  +  Q  ++ L  L+E  +  +I LTGG  GP+     
Sbjct: 56   LLAQSEAGYENLMRLNSCLYLT-KPGQLPQVTLDELREF-SGDVICLTGGPDGPVGMLLQ 113

Query: 161  FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY------DRYRESQVVQLAYTHELPLVAT 214
                  A+  +   +++FGDRLYV LQRH G       +R  E   V++AY  ELPLVAT
Sbjct: 114  ARQRPAAQTLMDRLREMFGDRLYVELQRHPGEGGLPEKERLTERGFVEMAYAMELPLVAT 173

Query: 215  NNSLFLSEEDYEAHDVLMAVAHSTV-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALEN 273
            N+  F  E  YEAHD L+ +A       Q+ R R+T  HY K   EM ++F+DLPEALEN
Sbjct: 174  NDVYFPKEGMYEAHDALICIADGAYVDQQEPRRRLTAQHYFKTPEEMATLFADLPEALEN 233

Query: 274  TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
            TVEIARRC+F+            +        +E  ELR  A AGL+ RLA   I     
Sbjct: 234  TVEIARRCAFMAY--------RRDPILPKFADDEVAELRRMANAGLQARLA--VIPHAVS 283

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
             ++Y++RLDFEL +I  M F GYFLIVADFIQWAK ++IPVGPGRGSGAGS+ AYALTIT
Sbjct: 284  PEEYQERLDFELGIIEGMGFPGYFLIVADFIQWAKDHDIPVGPGRGSGAGSLVAYALTIT 343

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            D+DPLR+SLLFERFLNP+R+SMPDFDIDFC DRR+EVIRYVQ KYG ++V QIITFG+L 
Sbjct: 344  DLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRYVQEKYGRDKVGQIITFGALL 403

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLL 512
            +KAA+RD+GR LQMPY QVDRL K+IP +   PVS+   +  + R R     +  V RLL
Sbjct: 404  SKAAVRDIGRVLQMPYGQVDRLSKMIPVEGVKPVSISDALKQEERLRAEARNEEVVKRLL 463

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            +   ++EGL R+ASTHAAG+VIGDRPL +LVP+Y+D RSD+P TQFNMKW+E+AGL+KFD
Sbjct: 464  DYGMEVEGLLRNASTHAAGVVIGDRPLDRLVPLYQDPRSDMPATQFNMKWVEQAGLVKFD 523

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVD------------------LSLIPFDDHETYHLLTT 614
            FLGLKTLT++Q +++ +   G  +                   ++ IP DD +TY L + 
Sbjct: 524  FLGLKTLTVIQNAIEQIHAGGRDLHTAADGAQIYEPFPGAENQINAIPLDDAKTYELYSR 583

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
              T+ +FQ+ESSGM  AL+ M+P CIEDI+ALV+LYRPGP++NI  Y   KNG+ +I S+
Sbjct: 584  AKTVAVFQVESSGMMDALKRMKPTCIEDIVALVALYRPGPMENIPTYCEVKNGQREIESV 643

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            HPLID +L+ETQG+I+YQEQVMQIAQ ++GY+L  AD+LRRAMGKKIKE MD ++ +F  
Sbjct: 644  HPLIDHILEETQGIIVYQEQVMQIAQEMAGYTLGGADLLRRAMGKKIKEAMDAERPKFEK 703

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            GA++ G+ K  A  +F+LL KFA+YGFNKSHAAAYAV+SYQTAW+K ++PVEF+A  M  
Sbjct: 704  GAAEKGVEKKKASEVFDLLEKFANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAGVMNC 763

Query: 795  EMDNVEKIKKFCQDA-RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
            ++   EK+  + ++  +Q  +  +PP VN     F V D  + Y+L A+K VG    R +
Sbjct: 764  DIHLTEKLAIYFEEVKKQLGLPYIPPCVNRSDSAFTVKDGALVYALGALKNVGLDAMRLV 823

Query: 854  MEAS----ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            +E       DKPF +L DF  RV+ K++ +R LE +  AGA D    +R ++  SLD + 
Sbjct: 824  VEGRRVDGEDKPFVNLFDFARRVELKRVGKRPLEMMARAGAFDVLDPNRRRVFDSLDALV 883

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +Y+  + + + +   ++F         +  L        + R   E + +GFY SGHPLD
Sbjct: 884  QYSAAIWEQKQSSQVSLFGDAGEDL-PEPRLSPVQDWLPAERLAEEFKAIGFYLSGHPLD 942

Query: 970  VYKPILRKMGIKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             Y   L++  IK  +E      G     ++A +V  +Q++K+ +G+R  +V  S+    Y
Sbjct: 943  DYSAALKRKDIKTLDEVWQMASGGALIAKMAGVVAGRQERKSARGNRFAFVQISDRTGAY 1002

Query: 1028 EANFF 1032
            E   F
Sbjct: 1003 ECTVF 1007


>gi|255311363|ref|ZP_05353933.1| DNA polymerase III subunit alpha [Chlamydia trachomatis 6276]
 gi|255317664|ref|ZP_05358910.1| DNA polymerase III subunit alpha [Chlamydia trachomatis 6276s]
          Length = 1237

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1074 (34%), Positives = 567/1074 (52%), Gaps = 60/1074 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L  HS YS+L+   S+   + K    Q PA+A+TD  NLF A+EF +      I+PII
Sbjct: 4    IPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKPII 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+L +          + K+       ++LL    EGY+ L  L S  Y  +      RI
Sbjct: 64   GCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT-EGFYYVPRI 120

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L +  ++GLI L+   SG + +A    S +  EK LL ++ LF +  +  +Q H+ 
Sbjct: 121  DRDLLSQ-HSKGLICLSACLSGSVAQAALE-SEEDLEKDLLWYQDLFQEDFFSEVQLHKS 178

Query: 192  YDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             +                            V+  +    +P VATN+  +L+ +D+ AH+
Sbjct: 179  SEEKVALFEETWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWLAHE 238

Query: 230  VLM----------AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            +L+          A  ++ + + K +   + + Y K+  E+  +F+  PE + NT  +A 
Sbjct: 239  ILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEIAELFAAHPETITNTCIVAE 298

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQGAIAK- 330
            RC   L       P ++ +         E E        L      GL  +     +   
Sbjct: 299  RCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELLRHI 358

Query: 331  ------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                         ++RL  E ++I       Y LIV D I WAK + IPVGPGRGSGAGS
Sbjct: 359  AKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGAGS 418

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            V  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + VA
Sbjct: 419  VMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKDNVA 478

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            QIITFG+++AK A++DVGR L  P ++V+ + K IP+  A   S   +  D   R+  + 
Sbjct: 479  QIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITSA--LEADPELRQLYVD 536

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++MK +E
Sbjct: 537  DAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKPVE 596

Query: 565  KAGLIKFDFLGLKTLTLLQ-KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              G++K DFLGLKTLT +   +     + G+ +  + IP DD  T+ LL    T+GIFQ+
Sbjct: 597  SVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGIFQM 656

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES GM+   + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++P+LK
Sbjct: 657  ESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPILK 716

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S A+ NGI  
Sbjct: 717  ETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANGIDP 776

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
            +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ 
Sbjct: 777  SIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEKVG 836

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862
            K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E    + P+
Sbjct: 837  KLIQEAHSMNILVLPPDINESGQDFEATQKGIRFSLGAVKGVGMSIVDSIVEEREKNGPY 896

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             SL+DF  R D KK+ ++ LE+LV AG  DCF  ++   L  L+++       +K     
Sbjct: 897  KSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEAATG 956

Query: 923  HENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                F+ +          ++ E     +     + E+ +LG Y + HP+D  + +L  + 
Sbjct: 957  VLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLPFLS 1016

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFF 1032
            +    +      G  IR   ++     K  + +  +   +  S+    YE   +
Sbjct: 1017 VVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKKFALLQVSDEVDSYELPIW 1070


>gi|149371985|ref|ZP_01891304.1| DNA polymerase III, alpha subunit [unidentified eubacterium SCB49]
 gi|149355125|gb|EDM43686.1| DNA polymerase III, alpha subunit [unidentified eubacterium SCB49]
          Length = 1476

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/1099 (31%), Positives = 545/1099 (49%), Gaps = 92/1099 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------SQKAC- 63
            F HL  HS YS+L+   S  ++++   AD Q A+A+TD+ N+  A  F         A  
Sbjct: 262  FAHLHNHSQYSILQSTSSTQDLVNAAIADNQRAVALTDSGNMMGAFHFSRAVNNHNAAKL 321

Query: 64   ----------------AAGI---------QPI-----IGCQLDIDMQDNLKMTNQGKTPF 93
                            A            +PI     +GC+  +         +  K+  
Sbjct: 322  KEYEAALAAYEAVDDTATDFEGQVPDKPEKPIPVTAIVGCEFFVC------QDHLDKSNK 375

Query: 94   PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSG 153
                 IV+L     GY  L ++ S  +  +      RI    +++   + +I+L+GG  G
Sbjct: 376  DNGYQIVILAKNKAGYHNLAKMSSIAFT-EGFYYVPRIDREVIKKY-RDDIIILSGGMYG 433

Query: 154  PIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLV 212
             I           AE+ LL +K+ FGD  Y+ + RH   D  R    ++  +  H++ L+
Sbjct: 434  EISSKILNVGENQAEEALLWWKEEFGDDFYLEILRHGQEDEDRVNQTIIDFSRKHDVKLI 493

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFS 265
            A NN+ ++ +E   AHD+L+ V      +                ++Y K++ EM  IF 
Sbjct: 494  AANNTYYIDKESANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSQDEMKLIFK 553

Query: 266  DLPEALENTVEIARRCSFI--------LQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
            DLPEA+ N  E+  +                 P   +  E E D  ++ E   L++    
Sbjct: 554  DLPEAIINIAEVIEKIEPYSLQRDVLLPVFDIPDEFKVAEDEIDGGKRGENAFLKHLTYI 613

Query: 318  GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
            G +          G    + ++RLDFEL+VIA   + GYFLI  DFI+ A+K ++ VGPG
Sbjct: 614  GAKE-------RYGEITDEIKERLDFELDVIANTGYPGYFLITEDFIREARKLDVSVGPG 666

Query: 378  RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
            RGS AGSV AY L IT+IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V++YV +K
Sbjct: 667  RGSAAGSVVAYCLKITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMQYVIDK 726

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-------------DPA 484
            YG  +VAQIIT+G++ AK+++RD  R L +P ++ D + KLIPN             +  
Sbjct: 727  YGGNQVAQIITYGTMAAKSSIRDTARVLDLPLNEADHVAKLIPNMTKLAKVFGYSEKELK 786

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                   +                   +  ++KLEG  R+   HA G++I    ++  VP
Sbjct: 787  QKFRSDELPKVLELIATSEGTDLTAETINQAKKLEGSVRNTGIHACGVIITPSDITNYVP 846

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPF 603
            +     SDL VTQF+   +E AGL+K DFLGLKTLTL++ ++  +  +     D    P 
Sbjct: 847  VSTAKDSDLYVTQFDNSVVEDAGLLKMDFLGLKTLTLIKDTVKLVKHKHGIDLDPDNFPL 906

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  TY L     T+GIFQ ES+GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  
Sbjct: 907  DDVPTYELFQRGETVGIFQYESAGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFIR 966

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RKNG+E+I    P ++  LKET G+ +YQEQVM ++Q L+ +S  +ADVLR+AMGKK K 
Sbjct: 967  RKNGEEEIEYDLPAMEEYLKETYGITVYQEQVMLLSQKLANFSKGDADVLRKAMGKKQKA 1026

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +DK K RFI  A  NG        I++    FA Y FNKSH+  YA I+YQTA++K HY
Sbjct: 1027 VLDKMKPRFIENAVGNGHDAEKLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHY 1086

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAI 842
            P E++AA ++  M +++++  F ++ ++  ++I+ P VN     F V D   + + + AI
Sbjct: 1087 PAEYMAAVLSNNMRDIKQVTFFMEECKRMGLEILGPDVNESFFKFSVNDRGAVRFGMGAI 1146

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KGVG      I+E   +  + S+ D   R+D +  N++  E+L  AG  D F   R Q L
Sbjct: 1147 KGVGANAVATIVENREEAKYKSIFDMAKRIDLRSANKKAFENLALAGGFDSFNAHRAQYL 1206

Query: 903  QS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
                     L+ + KYA   ++++ +   ++F         +  +       +  +   E
Sbjct: 1207 HQDADGQTFLEKVLKYANKYQESKNSSQVSLFGESSDVQIPEPEVPPCEEWGTMKKLRQE 1266

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGS 1013
            + V+G Y SGHPLD +K  +R        +     +  G  +    +V   Q ++++ G 
Sbjct: 1267 REVVGVYISGHPLDDFKIEMRSFANCKVADFNELEQHVGKEMSFGGIVADVQHRESKAGK 1326

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
                 T  +    YE   F
Sbjct: 1327 GWAIFTVEDYDDSYEFKIF 1345


>gi|15605274|ref|NP_220060.1| DNA polymerase III subunit alpha [Chlamydia trachomatis D/UW-3/CX]
 gi|14194664|sp|O84549|DPO3A_CHLTR RecName: Full=DNA polymerase III subunit alpha
 gi|3328984|gb|AAC68147.1| DNA Pol III Alpha [Chlamydia trachomatis D/UW-3/CX]
 gi|297748675|gb|ADI51221.1| DNA polymerase III alpha subunit [Chlamydia trachomatis D-EC]
 gi|297749555|gb|ADI52233.1| DNA polymerase III alpha subunit [Chlamydia trachomatis D-LC]
          Length = 1237

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1074 (34%), Positives = 573/1074 (53%), Gaps = 60/1074 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L  HS YS+L+   S+   + K    Q PA+A+TD  NLF A+EF +      I+PII
Sbjct: 4    IPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKPII 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+L +          + K+       ++LL    EGY+ L  L S  Y  +      RI
Sbjct: 64   GCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT-EGFYYVPRI 120

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L +  ++GLI L+   SG + +A    S +  EK LL ++ LF +  +  +Q H+ 
Sbjct: 121  DRDLLSQ-HSKGLICLSACLSGSVAQAALE-SEEDLEKDLLWYQDLFQEDFFSEVQLHKS 178

Query: 192  YDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             +                            V+  +    +P VATN+  +L+ +D+ AH+
Sbjct: 179  SEEKVALFEETWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWLAHE 238

Query: 230  VLM----------AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            +L+          A  ++ + + K +   + + Y K+  E+  +F+  PE + NT  +A 
Sbjct: 239  ILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEIAELFAAHPETITNTCIVAE 298

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQ---GAI 328
            RC   L       P ++ +         E E        L      GL  +      G I
Sbjct: 299  RCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELLGHI 358

Query: 329  AKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            AK +  +D     ++RL  E ++I       Y LIV D I WAK + IPVGPGRGSGAGS
Sbjct: 359  AKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGAGS 418

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            V  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + VA
Sbjct: 419  VMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKDNVA 478

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            QIITFG+++AK A++DVGR L  P ++V+ + K IP+  A   S   +  D   R+  + 
Sbjct: 479  QIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITSA--LEADPELRQLYVD 536

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++MK +E
Sbjct: 537  DAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKPVE 596

Query: 565  KAGLIKFDFLGLKTLTLLQ-KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              G++K DFLGLKTLT +   +     + G+ +  + IP DD  T+ LL    T+GIFQ+
Sbjct: 597  SVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGIFQM 656

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES GM+   + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++P+LK
Sbjct: 657  ESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPILK 716

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S A+ NGI  
Sbjct: 717  ETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANGIDP 776

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
            +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ 
Sbjct: 777  SIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEKVG 836

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862
            K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E    + P+
Sbjct: 837  KLIQEAHSMNILVLPPDINESGQDFEATQKGIRFSLGAVKGVGMSIVDSIVEEREKNGPY 896

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             SL+DF  R D KK+ ++ LE+LV AG  DCF  ++   L  L+++       +K     
Sbjct: 897  KSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEAATG 956

Query: 923  HENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                F+ +          ++ E     +     + E+ +LG Y + HP+D  + +L  + 
Sbjct: 957  VLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLPFLS 1016

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFF 1032
            +    +      G  IR   ++     K  + +  +   +  S+    YE   +
Sbjct: 1017 VVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKKFALLQVSDEVDSYELPIW 1070


>gi|299533528|ref|ZP_07046905.1| DNA polymerase III, alpha subunit [Comamonas testosteroni S44]
 gi|298718486|gb|EFI59466.1| DNA polymerase III, alpha subunit [Comamonas testosteroni S44]
          Length = 1177

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1058 (38%), Positives = 591/1058 (55%), Gaps = 58/1058 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   +N ++   A D Q A+AITD NNLF  ++F ++    G++P+
Sbjct: 2    FVHLRLHTEFSVVDGTTRVNAMIKAAAEDGQVAMAITDFNNLFGGIKFYREGRGKGVKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++                    I++LV + +GY  + EL++R +  +  +   +
Sbjct: 62   LGAEIMLE-----------GLGDAPPSRIIVLVQSKQGYHNIAELLARGWTRNVVRDQAQ 110

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
                WLQE+G EGLI+L+G  +GP+  A      + A +       +F  R Y+ LQR  
Sbjct: 111  HKWEWLQELG-EGLIVLSGAQAGPVGIALTRGDEKGAAEIAQRLATMFPHRFYIELQRAG 169

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  D       V+LA    LP+VAT+   +   +DYEAH+  + +A   ++    R R  
Sbjct: 170  RADDESHVLAAVKLASRLNLPVVATHPIQYAKPDDYEAHEARVCIAEGEILGNAKRVRKF 229

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T D Y K  +EM  +F+D+P A+ENTVEIARRCS  L++  P LP F       +    +
Sbjct: 230  TRDQYFKTTAEMEQLFADIPSAIENTVEIARRCSLTLELGNPQLPNFPVPSGMSM----D 285

Query: 309  NELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R+++  GLE     L   A  +      Y +RL+FEL  I +M F GYFLIV+DFI+
Sbjct: 286  EFFRHESYQGLEERLVHLYPDAAKRDAQRSRYVERLEFELGTIMKMGFPGYFLIVSDFIK 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N  PVGPGRGSGAGS+ AY L +TD+DPL ++LLFERFLNP+R+SMPDFD+DFCQ 
Sbjct: 346  WAKANGCPVGPGRGSGAGSLVAYVLKVTDLDPLEYNLLFERFLNPERVSMPDFDVDFCQQ 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV+++YG + V+QI TFG++ A+AA+RDVGR L M Y+  D + KLIPN P  
Sbjct: 406  NRDRVIDYVKDRYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGL 465

Query: 486  PVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             V+                AI ++    E    +  V  L+E++Q LEG+ R+   HA G
Sbjct: 466  HVTLKYPPNPPKEGDKYTYAIKEEPILAERIEREEDVKTLIEMAQSLEGMTRNIGMHAGG 525

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI    L+   P+Y+   S   V  ++   +E  GL+KFDFLGL TLT+L+ + +F+ +
Sbjct: 526  VVIAPGRLADFCPLYQQPGSTSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIMK 585

Query: 592  RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R           IP DD+ TY L +   T  +FQ ES GM+Q L+  +P  +ED+IAL +
Sbjct: 586  RHKGQENFQFENIPLDDYPTYKLFSDGKTEAVFQFESRGMQQMLKEAKPSRLEDLIALNA 645

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RK+G+E +   HPL++ +L ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 646  LYRPGPMDLIPTFIARKHGQEVVEYPHPLVESVLAETYGIMVYQEQVMQTAQVLGGYSLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM K +  F  GA+KNG+S+  A  +F+L+ KFA YGFNKSHAAA
Sbjct: 706  GADLLRRAMGKKKVEEMVKHRGIFREGAAKNGLSEEKADEVFDLMEKFAGYGFNKSHAAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y++++Y T W+K HY  EF   +MT+EMDN +K+K   +DA +  I    P VN     F
Sbjct: 766  YSLLAYHTGWLKVHYTAEFYCGNMTVEMDNTDKLKVLYEDALKMGITFEMPDVNRGVYRF 825

Query: 829  K-VGDNRIYYSLAAIKGVGTTTARHIMEAS----------ADKPFDSLEDFCSRVDSKKL 877
            + V D  I Y L AIKG G      I+ A              PF SL DFC RVD  ++
Sbjct: 826  EPVTDKVIRYGLGAIKGTGQAAIEAIVAARNGEGTGPNGHEKGPFKSLFDFCLRVDRSRI 885

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGT 933
            N+R +E+L+  GA D    +R  L+ +LD    +A     N       +F        G+
Sbjct: 886  NKRTVEALIKGGAFDTIDMNRASLMATLDTAFGFAATSIAN--ADQGGLFDMMGDDALGS 943

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
             + +  +          +   E+  +GFY +GH  D  +  +R+       E   +    
Sbjct: 944  STAEPPMADVLPWGVKEKLTLEKTAIGFYLTGHLFDEVEAEVRRFVRTPIGEMRDSREPQ 1003

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
               +A ++   +    ++G R+   T  + +   EA+ 
Sbjct: 1004 --TMAGIIGGLRTINGQRG-RLSIFTLDDKSAVIEASV 1038


>gi|264678275|ref|YP_003278182.1| DNA polymerase III subunit alpha [Comamonas testosteroni CNB-2]
 gi|262208788|gb|ACY32886.1| DNA polymerase III, alpha subunit [Comamonas testosteroni CNB-2]
          Length = 1177

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/1058 (38%), Positives = 591/1058 (55%), Gaps = 58/1058 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   +N ++   A D Q A+AITD NNLF  ++F ++    G++P+
Sbjct: 2    FVHLRLHTEFSVVDGTTRVNAMIKAAAEDGQVAMAITDFNNLFGGIKFYREGRGKGVKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++                    I++LV + +GY  + EL++R +  +  +   +
Sbjct: 62   LGAEIMLE-----------GLGDAPPSRIIVLVQSKQGYHNIAELLARGWTRNVVRDQAQ 110

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
                WLQE+G EGLI+L+G  +GP+  A      + A +       +F  R Y+ LQR  
Sbjct: 111  HKWEWLQELG-EGLIVLSGAQAGPVGIALTRGDEKGAAEIAQRLATMFPHRFYIELQRAG 169

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  D       V+LA    LP+VAT+   +   +DYEAH+  + +A   ++    R R  
Sbjct: 170  RADDESHVLAAVKLASRLNLPVVATHPIQYAKPDDYEAHEARVCIAEGEILGNAKRVRKF 229

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T D Y K  +EM  +F+D+P A+ENTVEIARRCS  L++  P LP F       +    +
Sbjct: 230  TRDQYFKTAAEMEQLFADIPSAIENTVEIARRCSLTLELGNPQLPNFPVPSGMSM----D 285

Query: 309  NELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R+++  GLE     L   A  +      Y +RL+FEL  I +M F GYFLIV+DFI+
Sbjct: 286  EFFRHESYQGLEERLVHLYPDAAKRDAQRSRYVERLEFELGTIMKMGFPGYFLIVSDFIK 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N  PVGPGRGSGAGS+ AY L +TD+DPL ++LLFERFLNP+R+SMPDFD+DFCQ 
Sbjct: 346  WAKANGCPVGPGRGSGAGSLVAYVLKVTDLDPLEYNLLFERFLNPERVSMPDFDVDFCQQ 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV+++YG + V+QI TFG++ A+AA+RDVGR L M Y+  D + KLIPN P  
Sbjct: 406  NRDRVIDYVKDRYGRDAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGL 465

Query: 486  PVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             V+                AI ++    E    +  V  L+E++Q LEG+ R+   HA G
Sbjct: 466  HVTLKYPPNPPKEGDKYTYAIKEEPILAERIEREEDVKTLIEMAQSLEGMTRNIGMHAGG 525

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI    L+   P+Y+   S   V  ++   +E  GL+KFDFLGL TLT+L+ + +F+ +
Sbjct: 526  VVIAPGRLADFCPLYQQPGSTSAVAMYDKDDVEAVGLVKFDFLGLATLTILEIAREFIMK 585

Query: 592  RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R           IP DD+ TY L +   T  +FQ ES GM+Q L+  +P  +ED+IAL +
Sbjct: 586  RHKGQENFQFENIPLDDYPTYKLFSDGKTEAVFQFESRGMQQMLKEAKPSRLEDLIALNA 645

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RK+G+E +   HPL++ +L ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 646  LYRPGPMDLIPTFIARKHGQEVVEYPHPLVESVLAETYGIMVYQEQVMQTAQVLGGYSLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM K +  F  GA+KNG+S+  A  +F+L+ KFA YGFNKSHAAA
Sbjct: 706  GADLLRRAMGKKKVEEMVKHRGIFREGAAKNGLSEEKADEVFDLMEKFAGYGFNKSHAAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y++++Y T W+K HY  EF   +MT+EMDN +K+K   +DA +  I    P VN     F
Sbjct: 766  YSLLAYHTGWLKVHYTAEFYCGNMTVEMDNTDKLKVLYEDALKMGITFEMPDVNRGVYRF 825

Query: 829  K-VGDNRIYYSLAAIKGVGTTTARHIMEAS----------ADKPFDSLEDFCSRVDSKKL 877
            + V D  I Y L AIKG G      I+ A              PF SL DFC RVD  ++
Sbjct: 826  EPVTDKVIRYGLGAIKGTGQAAIEAIVAARNGEGTGPNGHEKGPFKSLFDFCLRVDRSRI 885

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGT 933
            N+R +E+L+  GA D    +R  L+ +LD    +A     N       +F        G+
Sbjct: 886  NKRTVEALIKGGAFDTIDMNRASLMATLDTAFGFAATSIAN--ADQGGLFDMMGDDALGS 943

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
             + +  +          +   E+  +GFY +GH  D  +  +R+       E   +    
Sbjct: 944  STAEPPMADVLPWGVKEKLTLEKTAIGFYLTGHLFDEVEAEVRRFVRTPIGEMRDSREPQ 1003

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
               +A ++   +    ++G R+   T  + +   EA+ 
Sbjct: 1004 --TMAGIIGGLRTINGQRG-RLSIFTLDDKSAVIEASV 1038


>gi|21672514|ref|NP_660581.1| DNA polymerase III alpha chain [Buchnera aphidicola str. Sg
            (Schizaphis graminum)]
 gi|25008381|sp|Q8K9S3|DPO3A_BUCAP RecName: Full=DNA polymerase III subunit alpha
 gi|21623135|gb|AAM67792.1| DNA polymerase III alpha chain [Buchnera aphidicola str. Sg
            (Schizaphis graminum)]
          Length = 1161

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1044 (38%), Positives = 614/1044 (58%), Gaps = 39/1044 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHS YS+++G     +++ K       A++ITD NNL+ A++F   A   G++PI
Sbjct: 6    FVHLHVHSDYSIVDGLSKPEDLIKKSVNLGMKALSITDFNNLYGAIKFYNAAHKWGLKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSV 129
            IG  +              +     +  + LL +  +GY+ LI L+SR Y      ++ V
Sbjct: 66   IGVTVKF----------FSELIKNELTELTLLATNQDGYKNLILLISRAYKKGYFCEKYV 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   WL E+   GLI+L+GG  G I +      + +    L  ++K F    Y+ L R 
Sbjct: 116  TIEKKWLSELNN-GLILLSGGCQGEIGKTLLRGQTSLISDCLHFYEKYFSGFYYLELIRT 174

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247
            +R  +    S  V L+Y+  +P+VATN+  FL++ED++ H + +A+     +   K +  
Sbjct: 175  YRENEEKYLSLAVDLSYSQNIPVVATNDVCFLNKEDFKIHKIRIAINEGVRLKESKIQNN 234

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   +LK   EM  +FSD+PEA+ N+VEI++RC+  ++       ++   + +  +   
Sbjct: 235  YSKHQFLKTEKEMCFLFSDIPEAIINSVEISKRCNVFIK-----SGQYFLPQFNTRKISI 289

Query: 308  ENELRNKAVAGLEVRLAQGAIAKG-YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            EN L  K+  GL+ RL              Y+ RLD EL +I +M F  YFLIV +FIQW
Sbjct: 290  ENYLIQKSNKGLKKRLESNFKKVDKEIFLKYKNRLDTELGIINKMGFPSYFLIVMEFIQW 349

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK NNIPVGPGRGSGAGS+ AY L IT++DPL F LLFERFLNP+R+S+PDFDIDFC ++
Sbjct: 350  AKDNNIPVGPGRGSGAGSLVAYVLNITEVDPLFFDLLFERFLNPERISLPDFDIDFCMEK 409

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD VI +V + YG E VAQIITFG++ AKA +RDVGR L  PY  ++ L KL+P DP   
Sbjct: 410  RDRVIEHVVHTYGRESVAQIITFGTMTAKAVIRDVGRVLGYPYGFINNLSKLVPLDPGIT 469

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A + +S       +D  +  L+++S+KLEG+ R+   HA G+VI    ++   P+Y
Sbjct: 470  LK-DAFSKNSELYTLYKSDEDIQNLIDVSKKLEGVNRNVGKHAGGVVISPSKITDFCPVY 528

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----RGVKVDLSLI 601
             D + + PVTQF+   IE  GL+KFDFLGL+TLT++  +++ + +         ++++ I
Sbjct: 529  CDEKGNNPVTQFDKNDIEYVGLLKFDFLGLRTLTIINCAVNMINKNLLLSNKKTININSI 588

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV- 660
            P ++ + + LL    T GIFQLES GM+  ++ +QPDC EDIIAL++L+RPGP+ + +V 
Sbjct: 589  PLNESKCFLLLKKCETTGIFQLESYGMKDLVKRLQPDCFEDIIALIALFRPGPLQSGMVD 648

Query: 661  -YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
             + NRK+G E+I        H L+ P+L+ T G+I+YQEQVMQIAQ+L+GY+L +AD+LR
Sbjct: 649  NFINRKHGYEEISYPDHKWQHILLKPVLESTYGIILYQEQVMQIAQILAGYTLGKADILR 708

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAM KK  ++M +Q+  FI GA KNGI++ +A+ IF+LL KFA YGFNKSH+ AYA++SY
Sbjct: 709  RAMSKKNIKDMAEQRSIFIEGAQKNGINRKLAIKIFDLLEKFAGYGFNKSHSVAYALVSY 768

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-N 833
            QT W+K HYP EF+A++MT ++DN +KI     ++ Q  I+I+PP++N    +F V    
Sbjct: 769  QTLWLKAHYPSEFMASAMTSDIDNTDKIVMLVNESIQMGIKIIPPNINLSKYEFYVDHTK 828

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L A+KG+G     ++++    +  F  L D C R D  K+ R+VLE L+ +G+ D
Sbjct: 829  NIVYGLGAVKGIGRNPILNLVQEREKNGLFSDLFDLCMRTDPNKITRKVLEKLIMSGSCD 888

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF--SVENSSV 950
            CF  +R  LL  +++  K ++   K +  + E++F   K   +          S  +   
Sbjct: 889  CFNKNRNYLLSLIEDAIKASKEHFKIKKFQQESLFGSFKEELNILKKNNNLLNSFSDEEK 948

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILR-KMGIKGYEESVATIR-GNNIRLAAMVVSKQQKK 1008
            + ENE +VLG Y +GHP+D Y   L+  +    + +          I +A +VVS + K 
Sbjct: 949  KLENEHKVLGLYLTGHPIDRYAEELKYYLNNSTFSKLKLFNHTKKKIMVAGIVVSIKTKV 1008

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T+  +RI  +   +     E   F
Sbjct: 1009 TKNKNRIVILILDDSTGLLEVVIF 1032


>gi|255693699|ref|ZP_05417374.1| putative DNA polymerase III alpha subunit [Bacteroides finegoldii DSM
            17565]
 gi|260620516|gb|EEX43387.1| putative DNA polymerase III alpha subunit [Bacteroides finegoldii DSM
            17565]
          Length = 1268

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1148 (31%), Positives = 568/1148 (49%), Gaps = 136/1148 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVARLVDKAMKNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   -------------------KA--CAAGI---------------QPIIGCQLDIDMQDNLK 84
                               +     A I               +PIIGC++ +       
Sbjct: 63   KGEVKDLKKRIAGIEAGTIECEDKEAEIADCKAKIVEAESKLFKPIIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +      +   +++L    +GY  LI+LVS  +         R   S L++   EGL
Sbjct: 120  MDLREGKLDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G I +    +    AE+ +  +K LFGD  Y+ +QRH+              
Sbjct: 178  IVCSACLGGEIPKRITNDQFAEAEEAIQWYKNLFGDDFYLEMQRHKATVPRANHECYPMQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ A  + + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VKVNKYLMEYAQKYNIKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPTRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P F   E    ++E       
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEEYRAKFTE 357

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L   A  G +    + 
Sbjct: 358  KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                   +++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS 
Sbjct: 418  L------SEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSA 471

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA 
Sbjct: 472  VAYCLGITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAH 531

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL 503
            IIT+G++  K A++DV R  ++P S+ DRL KL+P+           AIA     + A  
Sbjct: 532  IITYGTMATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLPNAIAYVPELQAAEA 591

Query: 504  A-DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558
            + DP V   L+ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+
Sbjct: 592  SSDPLVRDTLKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL++++++++ +   R ++VD+  I  +D  TY L +   T
Sbjct: 652  EGSVIEDTGLIKMDFLGLKTLSIIKEAVENIRLSRAIEVDVDQIDINDPATYKLYSDGRT 711

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+
Sbjct: 712  IGTFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPV 771

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  
Sbjct: 772  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGR 831

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + 
Sbjct: 832  KNGHDPKVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRSLS 891

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA 856
            N+  I K   + +   IQ + P VN   + F V  D  I + L A+KGVG    + IME 
Sbjct: 892  NITDITKLMDECKAMGIQTLGPDVNESNLKFTVNRDGNIRFGLGAVKGVGEAAVQSIMEE 951

Query: 857  S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907
               + PF  + DF  RV+    N++ +E L  AG  D F    R Q           L+ 
Sbjct: 952  REKNGPFTGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLET 1011

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGH 966
            + +Y    + ++     ++F  E         + +     +   R   E+ ++G Y S H
Sbjct: 1012 LMRYGNRYQADKAAAVNSLFGGENVIDVATPEIPQGVERWSDLDRLNRERDLVGIYLSAH 1071

Query: 967  PLDVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            PLD +  +L  +      +    A + G  I +  +V S ++  ++ G+  G     + +
Sbjct: 1072 PLDEFSIVLEHVCNTRMADLEDKAALAGREITMGGIVTSVRRGISKNGNPYGIAKIEDYS 1131

Query: 1025 KEYEANFF 1032
               E  F+
Sbjct: 1132 GSTEIPFW 1139


>gi|325129568|gb|EGC52392.1| DNA polymerase III, alpha subunit [Neisseria meningitidis OX99.30304]
          Length = 1144

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1038 (37%), Positives = 584/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+PI    + I                      +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RP   TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPHDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A    +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSLDDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQKRLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L K
Sbjct: 406  FDVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465

Query: 478  LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S  +A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLSLEKAMETEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + D +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIKNTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  IDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    D +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++  +   +       +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQVEIMV 1014


>gi|121611396|ref|YP_999203.1| DNA polymerase III subunit alpha [Verminephrobacter eiseniae EF01-2]
 gi|121556036|gb|ABM60185.1| DNA polymerase III, alpha subunit [Verminephrobacter eiseniae EF01-2]
          Length = 1186

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/1055 (38%), Positives = 576/1055 (54%), Gaps = 58/1055 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   ++ +    AAD QPA+AITD NNLF A++F +   + G++PI
Sbjct: 2    FVHLRMHTEFSVVDGTNRIDEVARAAAADGQPALAITDLNNLFGAVKFYKATRSQGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ +                     +++LV + +GY  L EL++R +     K    
Sbjct: 62   VGAEIFL-----------PGPAGAAPARLIVLVQSHQGYLNLSELLTRAWTRGVVKNQAL 110

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
               +WL+E+  EGLI+L G  +GP+ +A        A +  L    +F  R ++ LQR  
Sbjct: 111  CHWAWLEEL-AEGLIVLAGAQAGPVGQALLKGDDAGAAETALRLAGMFPHRFFIELQRAG 169

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  D    +    LA    LP+VAT+   F   +DYEAH+  + +A   +++   R R  
Sbjct: 170  RADDESHVAAAAALAARLRLPVVATHPVQFARADDYEAHEARICIAEGDILANPRRQRKF 229

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T D Y K+ +EM  +F+DLP AL NTVEIARRC+  L +  P LP F       I    E
Sbjct: 230  TRDQYFKSAAEMQRLFADLPSALANTVEIARRCNLTLVLGKPQLPDFPTPGGMPI----E 285

Query: 309  NELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R  +V GLE     L      +      Y  RL+FE+  I  M F+GYFLIV DFIQ
Sbjct: 286  AYFRVASVNGLEQRLLCLYPEPAQREQQRPRYLARLEFEIGTIVEMGFAGYFLIVGDFIQ 345

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WA+ N  PVGPGRGSGAGS+ AYA+ ITD+DPL + LLFERFLNP+R+SMPDFDIDFCQ 
Sbjct: 346  WARNNGCPVGPGRGSGAGSLVAYAMGITDLDPLEYKLLFERFLNPERVSMPDFDIDFCQA 405

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV++KYG + V+QI TFG++ AKAA+RDVGR + M Y+  D + KL+P  P  
Sbjct: 406  NRDRVIDYVKDKYGKDAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGIAKLVPAKPGI 465

Query: 486  PVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
              +                 +  + +  E    +  V  ++E++QKLEGL R+   HA G
Sbjct: 466  SYTLQYPPNPKKEGDKNHYVLELEPQLAERMRKEEDVRTVIEMAQKLEGLTRNIGMHAGG 525

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL---TLLQKSLDF 588
            ++I    L+   P+Y+   S   V+Q++   +E  GL+KFDFLGL TL    L ++ +  
Sbjct: 526  VLIAPGKLTDFCPLYQPPGSASAVSQYDKDDVEAIGLVKFDFLGLATLTILQLAREFIVG 585

Query: 589  LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
              +         I  DD  TY L +   T  +FQ ES GM+  L+  +P  + D+IAL +
Sbjct: 586  RHKGQQDFSYDAIALDDGPTYRLFSEGQTEAVFQFESRGMQGMLKEARPSRLGDLIALNA 645

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  + NRKNGKE ++  HPL++ +L ET G+++YQEQVMQ AQLL GYSL 
Sbjct: 646  LYRPGPMDLIPSFINRKNGKEPVLYPHPLVESVLAETYGIMVYQEQVMQTAQLLGGYSLG 705

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM + +  F  GA++ G+S+  A  +F+L+ KFA YGFNKSHAAA
Sbjct: 706  GADMLRRAMGKKKAEEMAEHRAIFRKGAAEKGLSQEKADEVFDLMEKFAGYGFNKSHAAA 765

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y++++Y T W+K HY  EF  A+MT+EMD+ +K+K   +DAR+  +   PP VN     F
Sbjct: 766  YSLLAYHTGWLKVHYTAEFFCANMTVEMDDTDKLKVLFEDARKMGLAFEPPDVNRGGHRF 825

Query: 829  KVGDNR-IYYSLAAIKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKKL 877
            +   N+ I Y L AIKG G      I+ A              PF SL DFC RVD  +L
Sbjct: 826  EPVSNKIIRYGLGAIKGTGQQAIEAIVAAREGRGEGPRGACSGPFKSLFDFCVRVDRARL 885

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGT 933
            N+R +E+L+ AGA D     R  L+ S+D    +A     N      ++F    A   G+
Sbjct: 886  NKRTVEALIKAGAFDSIERHRAALVASIDRAFDFAAATLANV--NQGSLFDMMGADAHGS 943

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
               +  L   +      +   E+  +GFY SGH  D     +R+      +E   +    
Sbjct: 944  SQQEPELVGAAPWGIREQLMQEKTAVGFYLSGHLFDEVAAEVRRFVRTAIDELTDSREPQ 1003

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
               LA +V   +    ++G         +     E
Sbjct: 1004 --VLAGIVCDLRVINGQRGKL-ALFRLDDKTGVIE 1035


>gi|114330405|ref|YP_746627.1| DNA polymerase III, alpha subunit [Nitrosomonas eutropha C91]
 gi|114307419|gb|ABI58662.1| DNA polymerase III, alpha subunit [Nitrosomonas eutropha C91]
          Length = 1166

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1052 (39%), Positives = 610/1052 (57%), Gaps = 47/1052 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P FVHL++HS YS+++G + +   + K      PA+A+TD +NLF  ++F Q AC 
Sbjct: 1    MLINPVFVHLRLHSEYSVVDGIVRIEEAVAKARDTGMPALALTDLSNLFGLVKFYQHACK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI GC + I  +++                ++LL  +  GY  L  L+SR Y  + 
Sbjct: 61   AGIKPIAGCDVWISNENDADRP----------FRLLLLCQSFSGYLLLSRLLSRAYRENM 110

Query: 125  GKQSVRICLSWLQE-IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             +    +   W +E  GTEGLI L+GG  G ++R    +           +  LF +R Y
Sbjct: 111  QRGRAELKKDWFREGAGTEGLIALSGGEQGEVERLLLADPDAATTAA-QEWAALFPERFY 169

Query: 184  VNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +QR  R  +      +++L    +LP+VAT+   F+  ED+ AH+  + +A   V+  
Sbjct: 170  LEIQRCGRPDEEVTNHAMLELVSGLKLPVVATHPVQFMQPEDFRAHEARVCIAQGYVLGD 229

Query: 243  KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            + RPR  T   Y K  +EM  +F D+PEAL N+VEIARRCS +L++    LP F      
Sbjct: 230  RRRPREFTEQQYFKTAAEMSELFGDVPEALANSVEIARRCSLMLELGVNRLPDFPTPAGI 289

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIA---KGYHAQDYRQRLDFELNVIARMKFSGYFL 358
             +    E  LR++A AGL VR+ Q       +      Y+ RLDFE+  I +M F+GYFL
Sbjct: 290  SV----EQYLRDRAQAGLVVRMTQLFPEAAQRDEKYPAYQARLDFEVETIIQMGFAGYFL 345

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV+DFI WAK++++PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDF
Sbjct: 346  IVSDFISWAKQHDVPVGPGRGSGAGSLVAYSLDITDLDPLRYDLLFERFLNPERVSMPDF 405

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFCQDRR++VI YV+++YG E VAQI TFG++ AKA +RDVGR L +PY+ VD+L KL
Sbjct: 406  DIDFCQDRREQVIEYVRDRYGAESVAQIATFGTMAAKAVVRDVGRVLDLPYNFVDQLAKL 465

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            +P +    +  +A   +    +   A+  V  LLE++++LEGL R+   HA G++I    
Sbjct: 466  VPFELGMTL-HKAREIEPLLNQRAEAEEDVRNLLELAERLEGLTRNVGMHAGGVLIAPGK 524

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG----- 593
            ++   P+Y     D  V+Q++   +EK GL+KFDFLGL+TLT+L +++  + Q       
Sbjct: 525  ITDFCPVYCADSGDAVVSQYDKDDVEKIGLVKFDFLGLRTLTILDRAVADIRQYQLASLG 584

Query: 594  -----------VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
                        +  L  I  +D  T+ L+    T+GIFQ ES GM+  L+  +PD  ED
Sbjct: 585  GKDAGEQSVEENRFSLGDISLEDAATFALMAKGNTVGIFQFESRGMKDLLQKAKPDRFED 644

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            +IALV+LYRPGP+D I  +  RK+GK ++  + P + P+L  T G++IYQEQVMQIAQ++
Sbjct: 645  LIALVALYRPGPMDLIPDFIERKHGK-RVEYLDPRLQPILGPTYGIMIYQEQVMQIAQVI 703

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
             GYSL  AD+LRRAMGKK  EEM +Q+  F+ GA +NG+ +  AV +F L+ KFA YGFN
Sbjct: 704  GGYSLGGADLLRRAMGKKKVEEMAQQRAVFVEGAIRNGMMEADAVTLFSLMEKFAGYGFN 763

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            KSHAAAYA+I+YQTA++K HYP EF+AA M+ +MD+ +K+  F +D +   I I+PP +N
Sbjct: 764  KSHAAAYALIAYQTAYLKAHYPAEFMAACMSSDMDDTDKVNVFYEDCKLNGIAILPPDIN 823

Query: 823  TPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRR 880
                 F   D   I Y L AIKG G      I+ A      F  L DFC RVD + +NRR
Sbjct: 824  QSAYYFVPVDRKTIRYGLGAIKGTGEAAISAIVRAREQGIAFTGLFDFCQRVDRRIVNRR 883

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             +E+L+ AGA D    +R  L+ S+    +YA+    + T    ++F  +      +  +
Sbjct: 884  TIEALIRAGAFDTVEANRAALMASVGMALEYAE--HCSLTASQVSLF-DDNADLLQQPVI 940

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
             + +      + + E+  LGFY SGHP D Y   L +                   +A +
Sbjct: 941  TEIAQWPEKEKLQYEKMSLGFYLSGHPYDSYAKELSRFIPARLGRIAPGREPQ--LIAGV 998

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + + + + +R+G  +  VT  +     E   +
Sbjct: 999  IYAIRTQMSRRGK-MAIVTLDDGMARVELVVY 1029


>gi|94676467|ref|YP_588968.1| DNA polymerase III, alpha subunit [Baumannia cicadellinicola str. Hc
            (Homalodisca coagulata)]
 gi|94219617|gb|ABF13776.1| DNA polymerase III, alpha subunit [Baumannia cicadellinicola str. Hc
            (Homalodisca coagulata)]
          Length = 1163

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1045 (37%), Positives = 595/1045 (56%), Gaps = 39/1045 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PSF+HL++HS YS+++G + +++++ K  +   PA+A+TD  NL+  ++F + A + GI+
Sbjct: 4    PSFIHLRIHSDYSIIDGLIKVSSLVKKAVSLNMPALALTDVTNLYGIIKFYKAANSVGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG                       +  + +L +   GYQ L  L+S+ Y    G   
Sbjct: 64   PIIGADF----------LMYNPILGGELTELTILATNYIGYQCLTMLISQAYRRGYGAAG 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I   WL +   +GLI+L+G   G + +    +  Q  +K L  + + F DR Y+ L R
Sbjct: 114  PVIDRDWLIQ-HNQGLIILSGARKGDVGKLLLNDKMQQVKKCLAFYHRYFPDRYYLELIR 172

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQKDRP 246
                 +    +  V LA  + LP+VATN+  F+S +D++AH++ +A+ +   + + K   
Sbjct: 173  TGRLNEEKYLNLAVLLAKKNGLPVVATNDVRFISSDDFQAHNIRVAIHNGCLLDNVKQSY 232

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   Y+++  EM  +F D+PEAL N+VEIA RC+  +++       +   +       
Sbjct: 233  DYSSQQYIRSEQEMCELFKDIPEALANSVEIAIRCNVTIRLGE-----YFLPQFYTGNIS 287

Query: 307  EENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              + L   A  GLE RLA      I    +   Y QRLD EL VI  M F GYFLIV +F
Sbjct: 288  TNSYLIKCARQGLEERLAFLFPDLIQLKDNRLPYDQRLDQELQVINGMGFPGYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQW+K N+IPVGPGRGSGAGS+ AYAL ITDI+PL F LLFERFLNP+R+SMPDFDIDFC
Sbjct: 348  IQWSKDNSIPVGPGRGSGAGSLVAYALKITDINPLPFDLLFERFLNPERISMPDFDIDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PYS V+++ KL+P+DP
Sbjct: 408  MEKRDLVINHVAETYGRDAVSQIITFGTMAAKAVIRDVGRVLGYPYSFVNKISKLVPHDP 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A+A   + R+    D +V  L+++++KLEG+ R+   HA G+VI    ++   
Sbjct: 468  GITLD-KALAIAPQLRQIYNVDENVTLLIDLARKLEGVTRNVGKHAGGVVIAPTKITDFA 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV----KVDLS 599
            P+Y D     P+TQF+   IE AGL+KFDFLGL+TLT++ ++L+ + +        ++++
Sbjct: 527  PLYYDSEGKCPLTQFDKNDIEYAGLVKFDFLGLRTLTIINRALEMINKHIHSKLNPIEIT 586

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD +++ +L    T  IFQLES G+++ +  +QPDC EDIIAL++L+RPGP+ + +
Sbjct: 587  TIPLDDKKSFDMLLCADTTAIFQLESRGIKELIRRLQPDCFEDIIALIALFRPGPLQSGM 646

Query: 660  VYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            V N               I   HP + P+L+ T G+I+YQEQVMQIA++L+GY+L EAD+
Sbjct: 647  VDNFINRKHGRETICYPDIQWQHPSLQPILEPTYGIILYQEQVMQIARILAGYTLGEADL 706

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK  +EM KQ+  F  GA K GI   +A+ IF+L+ KFA YGFNKSH+ AYA++
Sbjct: 707  LRRAMGKKEPKEMVKQRAIFKIGAEKMGIESKLAMKIFDLVEKFAGYGFNKSHSTAYALV 766

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SYQT W+K HYP +F+A++MT ++DN++K+     +  +  I ++PP++N     F V  
Sbjct: 767  SYQTLWLKAHYPSQFMASAMTADIDNIDKLAILVYECLRMGITVLPPNINISHYYFHVNK 826

Query: 833  N-RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            N +I Y L AIKG+G      I+EA      F +L D C R  +KKLNRR+LE L+ +GA
Sbjct: 827  NSQIIYGLGAIKGLGEGPITTILEARNTGGKFSNLLDLCIRTCTKKLNRRILEKLIISGA 886

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT---FSDKITLEKFSVEN 947
             D  G  R  L+  L+   K A    K       ++F+ +             +     +
Sbjct: 887  CDQLGSHRAALMNELETALKTADQYTKLNMIGQIDMFSTQADKQCILDYSHKSKNIQPWS 946

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAAMVVSKQQ 1006
              V  + EQ  LG Y + HP+  Y   ++        ++         I +  +++S + 
Sbjct: 947  KQVILKGEQETLGLYLTSHPIIEYLYEIKFYTKGLRLKDIPLITCSKKITVVGLLLSIRN 1006

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANF 1031
              T     +   T  +     +   
Sbjct: 1007 IITNNNQSLSICTIDDMTGHLDIAI 1031


>gi|296393842|ref|YP_003658726.1| DNA polymerase III subunit alpha [Segniliparus rotundus DSM 44985]
 gi|296180989|gb|ADG97895.1| DNA polymerase III, alpha subunit [Segniliparus rotundus DSM 44985]
          Length = 1179

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/1065 (30%), Positives = 527/1065 (49%), Gaps = 47/1065 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL  H+ YSLL+G   ++ +  + A  + PA+ +TD  N++ + EF + +   G+
Sbjct: 2    SDSFVHLHNHTEYSLLDGHAQVDAMFQEAARLKMPAVGMTDHGNMWGSAEFYKASKKHGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQ----------GKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            +PIIG +  +          +            +       + ++   A+G + L++L S
Sbjct: 62   KPIIGIEAYLAPSSRFSTKREFWGEPGQRSDDVSGSGAYTHMTMVAKDAQGLRNLMKLSS 121

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
                  Q  +  R+    L E G  G+I  TG  SG +         + A +    F+++
Sbjct: 122  LASFEGQLGKWPRMDAELLAEHGR-GVIATTGCPSGEVQTKLRLGQFEAACEAAGRFQEI 180

Query: 178  FG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG +  Y+ L  H    +R     +++L    ++P +ATN+  ++ +E    H++L+ V 
Sbjct: 181  FGKENFYLELMDHGIDIERRVREDLLRLGERLKIPPLATNDCHYVRQEHARGHEILLCVQ 240

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                +S   R +   D Y    ++M+    D          +              +   
Sbjct: 241  TGKTMSDPGRFKFDGDGYYLKPADMMRAAWDSEVPGACDNTLLIAEQVGSYDEVWEVRDR 300

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +        +++ + LR++   GL+ R   G       + +YR R  FEL+VI +  F  
Sbjct: 301  MPVFPVPDGEDQNSWLRHEVDRGLQRRFPDGV------SDEYRARAAFELDVIKQKGFPS 354

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV D I +A+   I VGPGRGS AGS+ +YAL IT++DP++  LLFERFLNP+R S 
Sbjct: 355  YFLIVGDLIAYARSVGIRVGPGRGSAAGSLVSYALGITNLDPIKHGLLFERFLNPERPSA 414

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR- 474
            PD DIDF   RR E+IRY   K+G +RVAQ+ITFG+++ KAAL+D  R L          
Sbjct: 415  PDIDIDFDDRRRGEMIRYASEKWGADRVAQVITFGTIKTKAALKDSARVLHGQPGFAIAD 474

Query: 475  --LCKLIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
                 L P   A  +          +   + +  RE    DP V ++ E +  LEGL R+
Sbjct: 475  RITKALPPAIMAKDIPLSGITNPEHERYKEATEIRELIANDPDVAKIYETALSLEGLIRN 534

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            A  HA  I++ + PL + +P+++  +    +T ++    E  GL+K DFLGL+ LT++  
Sbjct: 535  AGVHACAIIMSNEPLIETIPLWKRPQDGAIITGWDYPSCEDIGLLKMDFLGLRNLTVIGD 594

Query: 585  SLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +++ + Q RGV++DL   P DD  T+ LL+   TLG+FQL+   MR  L  M+P    DI
Sbjct: 595  AIENIRQNRGVELDLENAPLDDPATFALLSRGETLGVFQLDGGPMRDLLRRMKPTGFGDI 654

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQVMQ 697
            +A++SLYRPGP+  +    Y +RKNG+++I  IHP ++  LK    ET G+I+YQEQ+M 
Sbjct: 655  VAVLSLYRPGPMGVNAHNDYADRKNGRQQIKPIHPELEEPLKEILSETYGLIVYQEQIMF 714

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IAQ ++GYS+ +AD LR+AMGKK  E +  + E F  G   NG S+     +++ +  FA
Sbjct: 715  IAQKVAGYSMGKADALRKAMGKKKLEVLQAEYEGFSQGMRGNGFSEAAVKALWDTVLPFA 774

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            DY FNKSHAA YA+++Y T ++K +YP E++AA +T   D+ +K   +  D R+  I ++
Sbjct: 775  DYAFNKSHAACYALVAYWTGYLKANYPAEYMAALLTSVGDDKDKAAVYLADCRKMGITVL 834

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKK 876
             P VN   VDF      I + L+ ++ VG      I+     +  F S  D+ ++ D   
Sbjct: 835  APDVNKSRVDFAAVGEDILFGLSGVRNVGVGLVESIIRTRESEGAFTSFSDYLAKADITA 894

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             N++ +ESL+ AG  D  G+ R  L              +K       ++F+    + S 
Sbjct: 895  CNKKAVESLIKAGGFDALGHPRKGLYLVHTEAVDAVMSTKKAEAQGQYDLFSDFFESGSP 954

Query: 937  KIT------LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--A 988
            ++T      +      +   +   E+ +LG Y SGHPL   +  L           +   
Sbjct: 955  ELTATFEVQIPD-EEWDMKQKLALEREMLGLYVSGHPLAGLEQALAAATDVSIRSILDGE 1013

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               G N+++  ++    ++  + G+        +     E   FP
Sbjct: 1014 VKDGTNVKVGGVLSGVNRRVNKNGAPYASAQLEDLVGGIEVFLFP 1058


>gi|212693673|ref|ZP_03301801.1| hypothetical protein BACDOR_03193 [Bacteroides dorei DSM 17855]
 gi|237708836|ref|ZP_04539317.1| DNA polymerase III alpha subunit [Bacteroides sp. 9_1_42FAA]
 gi|237724269|ref|ZP_04554750.1| DNA polymerase III alpha subunit [Bacteroides sp. D4]
 gi|265755905|ref|ZP_06090372.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_1_33FAA]
 gi|212663785|gb|EEB24359.1| hypothetical protein BACDOR_03193 [Bacteroides dorei DSM 17855]
 gi|229437457|gb|EEO47534.1| DNA polymerase III alpha subunit [Bacteroides dorei 5_1_36/D4]
 gi|229457262|gb|EEO62983.1| DNA polymerase III alpha subunit [Bacteroides sp. 9_1_42FAA]
 gi|263233983|gb|EEZ19584.1| DNA polymerase III alpha subunit [Bacteroides sp. 3_1_33FAA]
          Length = 1265

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/1147 (30%), Positives = 571/1147 (49%), Gaps = 135/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---------- 59
             FVHL VH+ YS+L+G  S+  ++DK  AD    IA+TD  ++F   EF           
Sbjct: 3    DFVHLHVHTQYSILDGQASIPRLVDKAMADGMKGIAVTDHGDMFGIKEFFNYVNKKNSST 62

Query: 60   -----------------------------------QKACAAGIQPIIGCQLDIDMQDNLK 84
                                               + A     +PI GC++ +      +
Sbjct: 63   NGEIKDLKKRIAGLEKGTVECDNPEAELVACKEKLEAAKRKLFKPIFGCEMYVA---RRR 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            + N+   P  +   +V+L    +GY  LI+LVS+ +  +      R     L++   EGL
Sbjct: 120  LFNKEGKPDQSGYHLVVLAKNEKGYHNLIKLVSKAWT-EGFYMRPRTDRVELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG-----------YD 193
            I+ T   +G + R       + AE+ +  +K++FGD  Y+ LQRH+              
Sbjct: 178  IVCTACIAGEVPRNIIAGKYEEAEEAIQWYKRVFGDDFYLELQRHKATVPRANHEAYKLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +    ++++ +    + LV TN+  F+ EE+ EAHD L+ ++    +   +R   +   +
Sbjct: 238  QIANEKLIEYSRKFNVKLVCTNDVHFVDEENAEAHDRLICLSTGKDLDDPNRMLYSKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE------- 306
            +K R+EM  +F+D+PEAL NTV+I  +  F    HAPI+P F   E    ++        
Sbjct: 298  MKTRAEMNEVFADVPEALSNTVDICDQVEFYSIDHAPIMPTFAIPEDFGTEEGYRKKYTE 357

Query: 307  ----------------------------------------EENELRNKAVAGLEVRLAQG 326
                                                    E + L+  A+ G   R  + 
Sbjct: 358  KDLFDEFTQDENGNVVMSEEAAKAKIEKLGGYDKLYRIKLEADYLKKLALEGAHKRYGE- 416

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSV 385
                    ++ ++R+ FEL+++  M F GYFLIV DFI+ A++  ++ VGPGRGS AGS 
Sbjct: 417  -----VLNEEVQERIKFELHIMKTMGFPGYFLIVQDFIRAAREELDVSVGPGRGSAAGSA 471

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY L IT IDP+ + LLFERFLNPDR+S+PD D+DF  D R  V+ +V  KYG E+VA 
Sbjct: 472  VAYCLGITKIDPIAYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTEKYGQEKVAH 531

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREA-R 502
            IIT+G++  K A++DV R  ++P S+ DRLCKL+P+           AIA     + A  
Sbjct: 532  IITYGTMATKLAIKDVARVQKLPLSESDRLCKLVPDKIPDKKMNLTNAIAYVPELQAAEV 591

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQF 558
              DP +   ++ ++ LEG  R+   HA G +I    ++  VP+      +    + VTQ+
Sbjct: 592  SPDPILRDTIKYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQY 651

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617
                IE  GLIK DFLGLKTL++++++++ +   +G+ +D+  +   D  TY L +   T
Sbjct: 652  EGSVIEDTGLIKMDFLGLKTLSIIKEAIENIKHSKGIILDIDEVDISDPPTYALYSEGRT 711

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +G FQ ES+GM++ L  ++P   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+
Sbjct: 712  IGTFQFESAGMQKYLRELEPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPI 771

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++  LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  
Sbjct: 772  MEKYLKDTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGR 831

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KNG    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA+M+  + 
Sbjct: 832  KNGHDPKVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAFLKANYPAEYMAATMSRNIS 891

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA 856
            N+ +I K   +++   I    P VN   + F V     I + L AIKGVG +  + I+E 
Sbjct: 892  NITEITKLMDESKATGIMTKGPDVNESYLKFSVNRKGDIRFGLGAIKGVGESAVQSILEE 951

Query: 857  SA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDN 907
               +  +  + DF  RV+    NR+ +E+L  AGA D F G  R              + 
Sbjct: 952  RERNGEYKDIFDFVQRVNLSACNRKNIENLALAGAFDSFTGIKREDFFVKNAKDETFTEV 1011

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +Y    + ++     ++F  E         +          R   E+ ++G Y S HP
Sbjct: 1012 LVRYGNKYQMDKAAAANSLFGGENQVDIATPEIIPSPAWGDLERLNKERDLVGIYLSAHP 1071

Query: 968  LDVYKPILRKMGIKGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            LD Y  IL  +      E      ++  ++ +  +V + ++  T+ G   G     + + 
Sbjct: 1072 LDEYAVILENVCNVHMAELADLTPLQNRDLTMGGIVSAVREGYTKTGKPYGIAKVEDYSG 1131

Query: 1026 EYEANFF 1032
              E  FF
Sbjct: 1132 SAEFAFF 1138


>gi|325127575|gb|EGC50498.1| DNA polymerase III, alpha subunit [Neisseria meningitidis N1568]
          Length = 1144

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1038 (37%), Positives = 586/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+PI    + I                      +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F++ +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TPD +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPDQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A    +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSRDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L K
Sbjct: 406  FDVDFCQANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465

Query: 478  LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S   A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLSLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  IDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    D +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VRLVDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++     +        +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLDRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQVEIMV 1014


>gi|239828024|ref|YP_002950648.1| DNA polymerase III subunit alpha [Geobacillus sp. WCH70]
 gi|239808317|gb|ACS25382.1| DNA polymerase III, alpha subunit [Geobacillus sp. WCH70]
          Length = 1104

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1026 (38%), Positives = 590/1026 (57%), Gaps = 41/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL V S YSLL     +++++ K    Q  A+A+TD N L+ A+ F  +    GI+P
Sbjct: 3    SFVHLHVRSCYSLLTSPAKISDLVKKAKDLQFSALALTDENVLYGAIPFYMECKRYGIRP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG   DI ++              +   +VLL     GYQ LI++ S +    Q     
Sbjct: 63   IIGMITDIVLEG------------ESTYPLVLLAKNETGYQHLIKISSTIQTKTQEG--- 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL      GLI LT G SG I+     N    A++ L  +K++FGD  Y+++QR 
Sbjct: 108  -IPEKWLWHY-RGGLIALTPGKSGQIETLLAHNEITKAKQLLERYKQIFGDDFYLSVQRG 165

Query: 190  RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E Q++ L+     PLVATN+  ++ +ED      L+A+    V+        
Sbjct: 166  ENKQQEPYEQQLIHLSNETNTPLVATNDVQYIEKEDAFVQHCLLAIKQGAVIKTGMAT-- 223

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + YL +  EM   FSDLPEA+EN+ +IA +C   + +    LP++   E    ++  +
Sbjct: 224  DGERYLTSPEEMKKRFSDLPEAVENSRKIADQCHLHISLDTLKLPKYPVPE----KENAD 279

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR   + GL              +  Y +RL++EL+VI +M FS YFLIV DF+ +A+
Sbjct: 280  HYLRRLCLKGLYE-------RVSSPSDAYIKRLEYELDVIQQMDFSDYFLIVWDFMNFAR 332

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            K  I  GPGRGS AGS+ AY L ITDIDP+++ LLFERFLNP+R+SMPD DIDF  DRR+
Sbjct: 333  KKGIVTGPGRGSAAGSLVAYTLYITDIDPIQYGLLFERFLNPERVSMPDIDIDFPDDRRE 392

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YV NKYG + VAQIITFG+  AKAALRD+G+ LQ+   +++ + K +PN     + 
Sbjct: 393  EVIQYVANKYGQQYVAQIITFGTFGAKAALRDIGKVLQIDSKEMENIIKYVPNKHGITI- 451

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +       FR+A  A   + + + I+ K+EGL RH STHAAG++I   PLSQ+VP+ + 
Sbjct: 452  QEVYHQSFAFRQAVQASSLLKQWIAIAMKVEGLPRHTSTHAAGVIISSEPLSQIVPLQQG 511

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHE 607
               +L +TQ+ M  +E+ GL+K DFLGL+TLTLL+        Q G  +D+  IP DD +
Sbjct: 512  -HGELYLTQYPMDVLERLGLLKMDFLGLRTLTLLEHICRLIQQQTGKTIDVRSIPLDDRK 570

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY L++   T GIFQLES GM+  L+ ++P   EDI+A+ +LYRPGPID I  Y  RK+G
Sbjct: 571  TYELVSKGDTNGIFQLESDGMKHVLKQLKPSQFEDIVAVNALYRPGPIDYIPSYIKRKHG 630

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E +  +HP + P+L  T GV+IYQEQ+MQIA  ++G+SL +AD+LRRA+ KK KE +D+
Sbjct: 631  EENVSYLHPDLAPILAPTYGVLIYQEQIMQIAANIAGFSLGKADLLRRAVAKKKKEILDQ 690

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+  F+ G    G  +  A ++++++ +FA+YGFN+SHA AY+++SYQ A++K HYP+ F
Sbjct: 691  QRNEFVQGCIDQGYDEGFANDVYDMIVRFANYGFNRSHAVAYSMLSYQLAYLKAHYPLYF 750

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A +T  + + EK+  +  +AR+  I+I+PPS+N     F V   +I YSLAAIK VG 
Sbjct: 751  YTALLTSVIGDEEKVSLYIYEARRKQIEILPPSINQSRYSFSVEHEKIRYSLAAIKHVGI 810

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               + I++     PF    DFC R+  K +NR+ +ESL+ +G  D FG  R  LL S+D 
Sbjct: 811  AAVKAIVQERKKGPFADFFDFCVRLFGKGINRKTIESLILSGCFDEFGIERASLLASIDV 870

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              ++AQ V          +F+      S K    +    +   +   E+ +LG Y S HP
Sbjct: 871  ALEHAQLVGPYVEEG---LFSD----ISLKPKYVEAPSLSLEEKLMYEKELLGVYVSPHP 923

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
               Y+ + R  G++     +       +++   +V +++ +T+ G  + + T S+ + E 
Sbjct: 924  TSAYRKVFRLDGVRSVMSVIREKTDFPVKVGVYIVEERKTRTKTGKEMAFFTVSDESGEM 983

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 984  DVVAFP 989


>gi|76789282|ref|YP_328368.1| DNA polymerase III subunit alpha [Chlamydia trachomatis A/HAR-13]
 gi|76167812|gb|AAX50820.1| DNA polymerase III alpha subunit [Chlamydia trachomatis A/HAR-13]
          Length = 1237

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1074 (34%), Positives = 572/1074 (53%), Gaps = 60/1074 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L  HS YS+L+   S+   + K    Q PA+A+TD  NLF A+EF +      I+PII
Sbjct: 4    IPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKPII 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+L +          + K+       ++LL    EGY+ L  L S  Y  +      RI
Sbjct: 64   GCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT-EGFYYVPRI 120

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L +  ++GLI L+   SG + +A    S +  EK LL ++ LF +  +  +Q H+ 
Sbjct: 121  DRDLLSQ-HSKGLICLSACLSGSVAQAALE-SEEDLEKDLLWYQDLFQEDFFSEVQLHKS 178

Query: 192  YDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             +                            V+  +    +P VATN+  +L+ +D+ AH+
Sbjct: 179  SEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWLAHE 238

Query: 230  VLM----------AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            +L+          A  ++ + + K +   + + Y K+   M  +F+  PE + NT  +A 
Sbjct: 239  ILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQGMAELFAAHPETITNTCIVAE 298

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQ---GAI 328
            RC   L       P ++ +         E E        L      GL  +      G I
Sbjct: 299  RCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELLGHI 358

Query: 329  AKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            AK +  +D     ++RL  E ++I       Y LIV D I WAK + IPVGPGRGSGAGS
Sbjct: 359  AKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGAGS 418

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            V  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + VA
Sbjct: 419  VMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKDNVA 478

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            QIITFG+++AK A++DVGR L  P ++V+ + K IP+  A   S   +  D   R+  + 
Sbjct: 479  QIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITSA--LEADPELRQLYVD 536

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++MK +E
Sbjct: 537  DAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKPVE 596

Query: 565  KAGLIKFDFLGLKTLTLLQ-KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              G++K DFLGLKTLT +   +     + G+ +  + IP DD  T+ LL    T+GIFQ+
Sbjct: 597  SVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGIFQM 656

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES GM+   + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++P+LK
Sbjct: 657  ESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPILK 716

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S A+ NGI  
Sbjct: 717  ETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANGIDP 776

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
            +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ 
Sbjct: 777  SIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEKVG 836

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862
            K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E    + P+
Sbjct: 837  KLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKNGPY 896

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             SL+DF  R D KK+ ++ LE+LV AG  DCF  ++   L  L+++       +K     
Sbjct: 897  KSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEAATG 956

Query: 923  HENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                F+ +          ++ E     +     + E+ +LG Y + HP+D  + +L  + 
Sbjct: 957  VLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLPFLS 1016

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFF 1032
            +    +      G  IR   ++     K  + +  +   +  S+    YE   +
Sbjct: 1017 VVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKKFALLQVSDEVDSYELPIW 1070


>gi|145224220|ref|YP_001134898.1| DNA polymerase III subunit alpha [Mycobacterium gilvum PYR-GCK]
 gi|315444554|ref|YP_004077433.1| DNA polymerase III subunit alpha [Mycobacterium sp. Spyr1]
 gi|145216706|gb|ABP46110.1| DNA polymerase III, alpha subunit [Mycobacterium gilvum PYR-GCK]
 gi|315262857|gb|ADT99598.1| DNA polymerase III, alpha subunit [Mycobacterium sp. Spyr1]
          Length = 1183

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1062 (30%), Positives = 516/1062 (48%), Gaps = 42/1062 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  +  +L +    + PAI +TD  N+F A EF   A  AGI+P
Sbjct: 4    SFVHLHNHTEYSMLDGAAKVKPMLAEAQRLEMPAIGMTDHGNMFGASEFYNAATDAGIKP 63

Query: 70   IIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIG +  I                       +   +   + ++   A G + L +L S  
Sbjct: 64   IIGIEAYIAPASRFDTKRVLWGDPGQKSDDVSGSGSYTHMTMVAENATGLRNLFKLSSLA 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
                Q  +  R+    + E   EG+I  TG  SG +         + A +    ++++FG
Sbjct: 124  SFEGQLGKWSRMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHDREALEAAARWREIFG 182

Query: 180  -DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +  ++ L  H    +R     ++++     +P +ATN+  +++ +  + H+ L+ +   
Sbjct: 183  PENFFLELMDHGLDIERRVREGLLEIGQKLGIPPLATNDCHYVTRDASQNHEALLCIQTG 242

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
              +S  +R +   D Y    +  +    D          +                  + 
Sbjct: 243  KTLSDPNRFKFDGDGYYLKSAAEMRALWDGQVPGACDSTLLIAERVQPYTDVWAPKDRMP 302

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                    ++ + L ++ +AGLE R +  A A G    +Y +R D+E+ VI    F  YF
Sbjct: 303  VFPVPEGHDQGSWLTHEVMAGLERRFS--AAAGGQVPPEYIERADYEIKVICDKGFPAYF 360

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVAD I +AK   I VGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R S PD
Sbjct: 361  LIVADLINYAKSVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERPSAPD 420

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQVDRL 475
             DIDF   RR E++RY  NK+G +RVAQ+ITFG+++ KAAL+D  R    Q  ++  DR+
Sbjct: 421  IDIDFDDRRRGEMLRYAANKWGSDRVAQVITFGTIKTKAALKDSARVHYGQPGFAIADRI 480

Query: 476  CKL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
             K   P   A  +        + +   + +  R     DP V  + E ++ LEGL R+A 
Sbjct: 481  TKALPPPIMAKDIPVSGITDPTHERYKEAAEVRALIDTDPDVRTIYETARGLEGLVRNAG 540

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HA  +++   PL   +P+++  +    +T ++    E  GL+K DFLGL+ LT++   +
Sbjct: 541  VHACAVIMSSEPLIDAIPLWKRPQDGAVITGWDYPSCEAIGLLKMDFLGLRNLTIIGDCI 600

Query: 587  DFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            + +   RGV VDL  +  DD + Y LL    TLG+FQL+ S MR  L  MQP    DI+A
Sbjct: 601  ENIKANRGVDVDLESLALDDPKAYELLGRGDTLGVFQLDGSAMRDLLRRMQPTEFNDIVA 660

Query: 646  LVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIA 699
            +++LYRPGP+       Y +RKNG++ I  IHP ++  LK+    T G+I+YQEQ+M IA
Sbjct: 661  VLALYRPGPMGMNAHNDYADRKNGRQPIKPIHPELEEPLKDILAETYGLIVYQEQIMFIA 720

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q ++ YS+ +AD LR+AMGKK  E ++ + + F  G + NG S+     +++ +  FA Y
Sbjct: 721  QKVASYSMGKADALRKAMGKKKLEVLEAEYKGFKEGMTANGFSEGAVKALWDTILPFAGY 780

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSHAA Y ++SY TA++K +Y  E++A  +T   D+ +K   +  D R+  I ++PP
Sbjct: 781  AFNKSHAAGYGLVSYWTAYLKANYQAEYMAGLLTSVGDDKDKAAIYLADCRRLGITVLPP 840

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLN 878
             VN    +F    + I + L A++ VG      ++    +   +    D+ +++D     
Sbjct: 841  DVNESVQNFASVGDDIRFGLGAVRNVGANVVASLVSTREEKGKYTDFSDYLNKIDITACT 900

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK- 937
            ++V ESL+ AGA D  G+ R  L     +        +K       ++F           
Sbjct: 901  KKVTESLIKAGAFDSLGHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGGDDDGDTGD 960

Query: 938  ----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIR 991
                I +          +   E+ +LG Y SGHPL+    +L           +      
Sbjct: 961  SAFTIKVPD-EEWEDKHKLALEREMLGLYVSGHPLNGIAHLLTAQVDTQIPAILEGAIPN 1019

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +R+  ++ S  ++  + G         + +   E  FFP
Sbjct: 1020 DAQVRVGGILASVNRRVNKNGLPWASAQIEDLSGGIEVLFFP 1061


>gi|224438383|ref|ZP_03659310.1| DNA polymerase III subunit alpha [Helicobacter cinaedi CCUG 18818]
 gi|313144825|ref|ZP_07807018.1| DNA polymerase III subunit alpha [Helicobacter cinaedi CCUG 18818]
 gi|313129856|gb|EFR47473.1| DNA polymerase III subunit alpha [Helicobacter cinaedi CCUG 18818]
          Length = 1144

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1082 (34%), Positives = 589/1082 (54%), Gaps = 67/1082 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  + N+  +I      ++A+TD  N+F AL+F       G+ PI
Sbjct: 3    FTHLHLHTEYSLLDGANKIKNLAKRIRELGMESVAVTDHGNMFGALDFYVSMKEEGLNPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  I   D L               + L      GY+ L+ L S+ ++ +      R
Sbjct: 63   IGMEAYIHNGDEL-----NDKSIKQRFHLCLFAKNEVGYKNLMYLSSQAFI-NGFYYYPR 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTFKKLFGD 180
            I    L+E  +EGL+  +    G ++     N+           ++A++  L +K +FG+
Sbjct: 117  INKRLLRER-SEGLVCSSACLQGEVNWQLNTNNPRNVQFGAKGYEMAKEVALEYKDIFGE 175

Query: 181  RLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ + RH   D+     Q+++L    ++ ++ATN++ +  ++D +A ++ M VA    
Sbjct: 176  DFYLEIMRHGINDQLFLDEQILRLGRELDIKVIATNDTHYTFQKDAKAQEIAMCVAMGKT 235

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE- 297
            ++ KDR + +  + Y+K+  +M  +F D+PE LENT EIA++C   L +    +      
Sbjct: 236  LNDKDRLKHSVKEFYVKSPQQMAQLFLDVPEVLENTQEIAQKCRLNLNLKNIEIKNKHTG 295

Query: 298  -------KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY------------------ 332
                          K  +   + + +  +     +      Y                  
Sbjct: 296  EVILEHSPATPPNFKRTQEYAKKENLPQILNCELESIDDAAYFAFKCREGLKERLEHIAE 355

Query: 333  -HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
               Q Y+ RL+ E+ +I  MKF GY LIV DF+ +AK+N IPVGPGRGS AGS+ AYAL 
Sbjct: 356  SKHQTYKDRLEREIEIINSMKFPGYMLIVWDFVNFAKQNGIPVGPGRGSAAGSLVAYALK 415

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT+IDPL++ LLFERFLNP+R+SMPD D+DF Q+RR E+I YV N YG   VAQ++TF S
Sbjct: 416  ITNIDPLKYDLLFERFLNPERVSMPDIDMDFSQERRQELIEYVSNTYGKFNVAQVVTFNS 475

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA----------IADDSRFREA 501
            L AK  +RDV R L MP    D   KLIPN+    ++ QA             + + +E 
Sbjct: 476  LLAKGVIRDVARVLDMPLKDADGFAKLIPNELGITLTKQAGKDGKEKDGAWEKEPKIKEL 535

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNM 560
               +P   ++ + +  LEGL R+   HAA IVI  +  L   VP+Y + + +    Q++M
Sbjct: 536  VERNPLAKQVWDYAVLLEGLKRNTGLHAAAIVIDSNDELWNKVPLYTNDKMNGVAVQYSM 595

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLG 619
             W+E   LIKFDFLGLKTL ++  ++  + +R  V +D S +  +D + Y  + +  TLG
Sbjct: 596  NWLEPVDLIKFDFLGLKTLDVISDAIKLVKKRYGVDIDFSTMDMEDSKVYETIQSGSTLG 655

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL 677
            +FQ+ES GM+   + ++P   EDIIA+++LYRPGP+++ +   + NRK+G   I      
Sbjct: 656  LFQIESEGMQALAKRLKPSNFEDIIAMLALYRPGPMESGMLDDFVNRKHGLASITYAFNA 715

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            ++P+LK T GVI+YQEQVMQI Q + G+SL  AD++RRAMGKK  +EM + K+ F  GA 
Sbjct: 716  LEPILKPTYGVIVYQEQVMQIVQTIGGFSLGGADLVRRAMGKKKLDEMLRLKKEFADGAE 775

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            K G ++T A +++EL+ KFA YGFNKSH+AAYA+I+YQTA++KT+Y  EF+AA +T E  
Sbjct: 776  KQGYNRTKAEDLWELIVKFAGYGFNKSHSAAYAMITYQTAYLKTYYEHEFMAAMLTSETR 835

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----NRIYYSLAAIKGVGTTTARHI 853
             VE + K+  + +   I+I+PP +N    DF VG+     +I + L+AIKG+G +   +I
Sbjct: 836  KVESVAKYINEVKSLGIEIIPPHINISENDFGVGEFDGVKKIIFGLSAIKGLGESPIENI 895

Query: 854  M-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            + +   +  + ++EDF +RVD  K+ +R LE L+ +G LD  G+SR  +L+++D +    
Sbjct: 896  ITDREKNGEYKNVEDFIARVDFSKMTKRSLEPLIKSGGLDGLGFSRHTMLENIDLLCDKG 955

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
            +  +K       ++F       +  + ++     +     + E   +G Y SGHPLD +K
Sbjct: 956  REKDKAHEMMSNSLFGEGGVEINVHLPIQDKPEYDIRTLLDYEYECMGIYISGHPLDDFK 1015

Query: 973  PILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEAN 1030
              L K+ G+    E       +   L   ++  ++K ++K G   G + F +   + E  
Sbjct: 1016 EKLDKIKGVVKSVELEDLELNSTCMLVGKILDIKRKISKKTGKPFGTIDFLDYGGKIEFM 1075

Query: 1031 FF 1032
             F
Sbjct: 1076 VF 1077


>gi|308752748|gb|ADO46231.1| DNA polymerase III, alpha subunit [Hydrogenobacter thermophilus TK-6]
          Length = 1158

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1067 (36%), Positives = 578/1067 (54%), Gaps = 71/1067 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL +H+ YSLL+GA+ + ++  K       A+AITD  NLF  LEF +    
Sbjct: 1    MLTMAEFVHLHLHTQYSLLDGAIKIKDLAKKARELGYKAVAITDHGNLFGILEFYRSMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
             GI+PIIG +             +             ++L+     G + L++L S  Y 
Sbjct: 61   EGIKPIIGMEAYFTTGSRHDRKGKASEDNITDRYNHHLILIAMNDTGLKNLMQLSSISYQ 120

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             +      RI    L +   EGLI +T    G           + A   +  FK LFG+ 
Sbjct: 121  -EGFYYKPRIDYEVLSQ-HCEGLIAITACLKGVPTHYASLGDEEKATHWVKKFKDLFGEN 178

Query: 182  LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            LY+ LQ ++  ++   ++ ++ +A    + L+ATN+S +L+ +D  AH VLMAV     +
Sbjct: 179  LYLELQSNQLPEQEIANRILINIAKKMGVKLIATNDSHYLNPDDRLAHQVLMAVQMKKTL 238

Query: 241  SQKDR----PRVTPDHYLKNRSEMVSIFS----DLPEALENTVEIARRCSFILQVHAPIL 292
             +  +           +     E+   F        EAL+NT+E+A +     ++     
Sbjct: 239  MEIKQESAIKCSNEGLHFAGPEEVWEKFKGKFEGWEEALKNTLEVAEKVQDSFELLE--N 296

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
              ++  + D   K     LR+ AV GL  R+ QG       + +Y  RL++EL V+ RM 
Sbjct: 297  RGYLFPKYDTEDKTTAEFLRHLAVKGLRQRIQQGL---AKDSPEYWNRLEYELEVVFRMG 353

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFLIV DFI WAK  +IPVGPGRGS AGS+ A++L ITDIDP++  LLFERFLNP+R
Sbjct: 354  FEGYFLIVQDFINWAKSQSIPVGPGRGSAAGSLLAFSLGITDIDPIKHGLLFERFLNPER 413

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPD D+DFC ++RD+VI YV++KYG E VAQIIT+  ++AK  LRDV RAL +PYS  
Sbjct: 414  ISMPDIDVDFCMEKRDKVIEYVKSKYGEENVAQIITYNVMKAKQTLRDVARALGVPYSVA 473

Query: 473  DRLCKLIPNDP--AHPVSLQAIADDS--------------------RFREARLADPSVDR 510
            D L KLIP        +SL+ +                        +FR+    +P +  
Sbjct: 474  DSLAKLIPQGDVQGTWLSLEEMYLVPIKELLDKYGHHRRDIEDHVSKFRKMCSENPEIKT 533

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            L+EI+ KLEGL RH S HAAG+VI   PL + +P+Y D +  +  TQF+M  +E+ GLIK
Sbjct: 534  LVEIALKLEGLTRHTSLHAAGVVISPLPLRERIPLYYD-KDQVLATQFDMVNLEELGLIK 592

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             DFLGLKTLT L++    + +R    ++   +P DD   Y LL    T G+FQLES GM+
Sbjct: 593  MDFLGLKTLTELERMKQLVEERHKVSINYLSLPLDDPLVYELLRKGNTTGVFQLESVGMK 652

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
              L+ ++PD  +DI+A+++LYRPGP+ +  +  Y NRK+GKE++  I P ++P+LK+T G
Sbjct: 653  NLLKRLEPDSFDDIVAVLALYRPGPLKSGLVDSYINRKHGKEQVDYIFPELEPVLKDTYG 712

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I+YQEQVM+I+Q+L+G++  +AD LR+A+GKK KE M + KE+FI GA + G ++   +
Sbjct: 713  IIVYQEQVMKISQVLAGFTPGQADTLRKAIGKKKKEVMQEMKEKFIRGALERGYNQEKVI 772

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++  + +FA Y FNKSH+ AY  ISY TA+MK HYP EF    ++ E  + + I    +
Sbjct: 773  KLWNDIEEFASYSFNKSHSVAYGYISYWTAYMKAHYPEEFFVVKLSTEKSDKKFI-NLIK 831

Query: 808  DARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            DA+ F  +I+ P +N   VDF +    +I + LA IKGVG  TAR I+EA  +  +  L 
Sbjct: 832  DAKSFGFEILQPDINESHVDFTIESKGKIRFGLARIKGVGEDTARSIVEAR-NGRWKGLG 890

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF   +D +K+N+RVLE+L+ AGA D  G SR       + +  Y     K       ++
Sbjct: 891  DFLKSIDQRKVNKRVLEALIKAGAFDFTGESR-------EKLLSYMDKASKGGVLPLGDL 943

Query: 927  FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            F  +     D                + E+ VLG Y S HP+D ++ +L   G   + E 
Sbjct: 944  FGTKVEQKVDP--------------LKYEKEVLGIYISKHPVDPFEKLLS--GKVKWLEE 987

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  ++        +V   + KKT+ G+ +      +      A  FP
Sbjct: 988  LEELQEGTYNFVGVVSDLKVKKTKNGTYMATFNLIDKTGIGHAVAFP 1034


>gi|255348923|ref|ZP_05380930.1| DNA polymerase III subunit alpha [Chlamydia trachomatis 70]
 gi|255503463|ref|ZP_05381853.1| DNA polymerase III subunit alpha [Chlamydia trachomatis 70s]
 gi|255507141|ref|ZP_05382780.1| DNA polymerase III subunit alpha [Chlamydia trachomatis D(s)2923]
 gi|289525590|emb|CBJ15068.1| DNA polymerase III alpha subunit [Chlamydia trachomatis Sweden2]
 gi|296435150|gb|ADH17328.1| DNA polymerase III subunit alpha [Chlamydia trachomatis E/150]
 gi|296438870|gb|ADH21023.1| DNA polymerase III subunit alpha [Chlamydia trachomatis E/11023]
          Length = 1237

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1074 (34%), Positives = 573/1074 (53%), Gaps = 60/1074 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L  HS YS+L+   S+   + K    Q PA+A+TD  NLF A+EF +      I+PII
Sbjct: 4    IPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKPII 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+L +          + K+       ++LL    EGY+ L  L S  Y  +      RI
Sbjct: 64   GCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT-EGFYYVPRI 120

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L +  ++GLI L+   SG + +A    S +  EK LL ++ LF +  +  +Q H+ 
Sbjct: 121  DRDLLSQ-HSKGLICLSACLSGSVAQAALE-SEEDLEKDLLWYQDLFQEDFFSEVQLHKS 178

Query: 192  YDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             +                            V+  +    +P VATN+  +L+ +D+ AH+
Sbjct: 179  SEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWLAHE 238

Query: 230  VLM----------AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            +L+          A  ++ + + K +   + + Y K+  E+  +F+  PE + NT  +A 
Sbjct: 239  ILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEIAELFAAHPETITNTCIVAE 298

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQ---GAI 328
            RC   L       P ++ +         E E        L      GL  +      G I
Sbjct: 299  RCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELLGHI 358

Query: 329  AKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            AK +  +D     ++RL  E ++I       Y LIV D I WAK + IPVGPGRGSGAGS
Sbjct: 359  AKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGAGS 418

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            V  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + VA
Sbjct: 419  VMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKDNVA 478

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            QIITFG+++AK A++DVGR L  P ++V+ + K IP+  A   S   +  D   R+  + 
Sbjct: 479  QIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITSA--LEADPELRQLYVD 536

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++MK +E
Sbjct: 537  DAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKPVE 596

Query: 565  KAGLIKFDFLGLKTLTLLQ-KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              G++K DFLGLKTLT +   +     + G+ +  + IP DD  T+ LL    T+GIFQ+
Sbjct: 597  SVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGIFQM 656

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES GM+   + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++P+LK
Sbjct: 657  ESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPILK 716

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S A+ NGI  
Sbjct: 717  ETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANGIDP 776

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
            +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ 
Sbjct: 777  SIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEKVG 836

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862
            K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E    + P+
Sbjct: 837  KLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKNGPY 896

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             SL+DF  R D KK+ ++ LE+LV AG  DCF  ++   L  L+++       +K     
Sbjct: 897  KSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEAATG 956

Query: 923  HENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                F+ +          ++ E     +     + E+ +LG Y + HP+D  + +L  + 
Sbjct: 957  VLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLPFLS 1016

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFF 1032
            +    +      G  IR   ++     K  + +  +   +  S+    YE   +
Sbjct: 1017 VVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKKFALLQVSDEVDSYELPIW 1070


>gi|166154760|ref|YP_001654878.1| DNA polymerase III subunit alpha [Chlamydia trachomatis 434/Bu]
 gi|166155635|ref|YP_001653890.1| DNA polymerase III subunit alpha [Chlamydia trachomatis
            L2b/UCH-1/proctitis]
 gi|301336034|ref|ZP_07224278.1| DNA polymerase III subunit alpha [Chlamydia trachomatis L2tet1]
 gi|165930748|emb|CAP04245.1| DNA polymerase III alpha subunit [Chlamydia trachomatis 434/Bu]
 gi|165931623|emb|CAP07199.1| DNA polymerase III alpha subunit [Chlamydia trachomatis
            L2b/UCH-1/proctitis]
          Length = 1237

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1074 (34%), Positives = 573/1074 (53%), Gaps = 60/1074 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L  HS YS+L+   S+   + K    Q PA+A+TD  NLF A+EF +      I+PII
Sbjct: 4    IPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKPII 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+L +          + K+       ++LL    EGY+ L  L S  Y  +      RI
Sbjct: 64   GCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT-EGFYYVPRI 120

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L +  ++GLI L+   SG + +A    S +  EK LL ++ LF +  +  +Q H+ 
Sbjct: 121  DRDLLSQ-HSKGLICLSACLSGSVAQAALE-SEEDLEKDLLWYQDLFQEDFFSEVQLHKS 178

Query: 192  YDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             +                            V+  +    +P VATN+  +L+ +D+ AH+
Sbjct: 179  SEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWLAHE 238

Query: 230  VLM----------AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            VL+          A  ++ + + K +   + + Y K+  EM  +F+  PE + NT  +A 
Sbjct: 239  VLLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEMAELFAAHPETITNTCIVAE 298

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQ---GAI 328
            RC   L       P ++ +         E E        L      GL  +      G I
Sbjct: 299  RCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELLGHI 358

Query: 329  AKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            AK +  +D     ++RL  E ++I       Y LIV D I WAK + IPVGPGRGSGAGS
Sbjct: 359  AKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGAGS 418

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            V  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + VA
Sbjct: 419  VMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKDNVA 478

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            QIITFG+++AK A++DVGR L  P ++V+ + K IP+  A   S   +  D   ++  + 
Sbjct: 479  QIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITSA--LEADPELKQLYVD 536

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++MK +E
Sbjct: 537  DAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKPVE 596

Query: 565  KAGLIKFDFLGLKTLTLLQ-KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              G++K DFLGLKTLT +   +     + G+ +  + IP DD  T+ LL    T+GIFQ+
Sbjct: 597  SVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGIFQM 656

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES GM+   + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++P+LK
Sbjct: 657  ESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPILK 716

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S A+ NGI  
Sbjct: 717  ETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANGIDP 776

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
            +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ 
Sbjct: 777  SIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEKVG 836

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862
            K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E    + P+
Sbjct: 837  KLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKNGPY 896

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             SL+DF  R D KK+ ++ LE+LV AG  DCF  ++   L  L+++       +K     
Sbjct: 897  KSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEAATG 956

Query: 923  HENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                F+ +          ++ E     +     + E+ +LG Y + HP+D  + +L  + 
Sbjct: 957  VLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLPFLS 1016

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFF 1032
            +    +      G  IR   ++     K  + +  +   +  S+    YE   +
Sbjct: 1017 VVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKKFALLQVSDEVDSYELPIW 1070


>gi|326382578|ref|ZP_08204269.1| DNA polymerase III subunit alpha [Gordonia neofelifaecis NRRL
            B-59395]
 gi|326198697|gb|EGD55880.1| DNA polymerase III subunit alpha [Gordonia neofelifaecis NRRL
            B-59395]
          Length = 1178

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/1063 (31%), Positives = 530/1063 (49%), Gaps = 48/1063 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL  H+ YS+L+GA  ++ +  +       AI +TD  N+F A EF   A   GI+P
Sbjct: 4    SFVHLHNHTEYSMLDGAAKMSPLFSEAERLGMTAIGMTDHGNMFGASEFYNTAKKHGIKP 63

Query: 70   IIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            IIG +  I  +                +   +       + ++   A G + L +L S  
Sbjct: 64   IIGIEAYIAPESRFNTKRVLWGTRDQKSDDVSGSGAYTHMTMVAENATGLRNLFKLSSLA 123

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             +  Q  +  R+    + E   EG+I  TG  SG +           A +    ++++FG
Sbjct: 124  SIEGQLGKWARMDAEIIAE-HAEGIIATTGCPSGEVQTRLRLGHDAEALEAAGKWQEIFG 182

Query: 180  -DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +  Y+ L  H    ++   S ++ +     +  + TN+  +++    E+H+ L+ +   
Sbjct: 183  KENFYLELMEHGLEIEQRVRSGLLDVGRKLGIKPLVTNDCHYVTRGHAESHEALLCLQTG 242

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAPILPRF 295
              +S   R +   D Y    +E +    D       ++T+EI  R     +V+       
Sbjct: 243  KTLSDPTRFKFDGDGYYLKSAEEMRALWDDVVPGGCDSTLEIGERVQSYEEVYTHHDRMP 302

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            I    D     +E  L  + +AGL+ R        G    +Y  R ++EL+VI +M F  
Sbjct: 303  IFPVPDGF--TQETWLAREVMAGLDRRF------DGNPPGEYVTRAEYELSVINQMGFPA 354

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+V D I  A +  I VGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R+SM
Sbjct: 355  YFLVVGDLIAHALEVGIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERVSM 414

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQVD 473
            PD DIDF   RR E+I Y   K+GH++VAQ+ITFG+++ KAA++D  R    Q  ++  D
Sbjct: 415  PDIDIDFDDRRRGEMITYASQKWGHDKVAQVITFGTIKTKAAIKDSARVQFGQPGFAIAD 474

Query: 474  R---------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            R         + K IP         +  A+ +  R     DP V R+ + +  LEGL R+
Sbjct: 475  RITKALPPPIMAKDIPVWGITDPEHERYAEATEVRTLIETDPDVKRIYDTALGLEGLVRN 534

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            A  HA  +++   PL+  +P+++  +    +T ++    E  GL+K DFLGL+ LT++  
Sbjct: 535  AGVHACAVIMSSEPLTDAIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGD 594

Query: 585  SLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +++ +   RG+ +DL  +P +D ++Y LL    TLG+FQL+ S MR  L  M+P   EDI
Sbjct: 595  AIENIKTNRGIDLDLDKLPLEDPKSYELLARGDTLGVFQLDGSAMRDLLRRMEPTGFEDI 654

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQVMQ 697
            +A+++LYRPGP+  +    Y +RKNG++++  IHP ++  LK    ET G+I+YQEQ+MQ
Sbjct: 655  VAVLALYRPGPMGVNAHNDYADRKNGRQEVKPIHPELEEPLKEILAETFGLIVYQEQIMQ 714

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IAQ ++GYSL +AD+LRRAMGKK KE +D+  + F  G   NG S+     +++ +  FA
Sbjct: 715  IAQKVAGYSLGQADLLRRAMGKKKKEILDEAYDGFAEGMRGNGFSQEAITALWDTVLPFA 774

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             Y FNKSHAA Y ++S+ TA++K +YP E++A  +T   D+ +K   +  D R+  I ++
Sbjct: 775  GYAFNKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAIYLADCRKMGITVL 834

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKK 876
            PP VN    DF      I + LAAI+ VG+     I+ A  +   + +  D+  ++D + 
Sbjct: 835  PPDVNASRADFAAVGEDIRFGLAAIRNVGSGVVSSIISAREEKGAYTNFSDYLGKIDVQA 894

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             +++V ESL+ AG  D  G+ R  L              +K       ++F         
Sbjct: 895  CSKKVTESLIKAGGFDSLGHDRKGLFLVHSEAIDAVISTKKAEAIGQFDLFGGVGDDGGG 954

Query: 937  KITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TI 990
               +           +  +   E+ +LG Y SGHPL   +  +           +     
Sbjct: 955  ASDVFAVKVPEDEWETKHKLALERDMLGLYVSGHPLAGLEHAIAAQTDTSITSLLEGSVA 1014

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G  I +  ++ S  ++  +KG     V   +     E  FFP
Sbjct: 1015 DGAQITIGGIISSVTRRVNKKGEPWAAVQLEDMVGGVEVYFFP 1057


>gi|254804357|ref|YP_003082578.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha14]
 gi|254667899|emb|CBA04031.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha14]
          Length = 1144

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1038 (37%), Positives = 583/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+PI    + I                      +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A+   +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSLDDYLIKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L K
Sbjct: 406  FDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465

Query: 478  LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+    A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  IDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++  +   +       +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQVEIMV 1014


>gi|237804896|ref|YP_002889050.1| DNA polymerase III subunit alpha [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273196|emb|CAX10109.1| DNA polymerase III alpha subunit [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 1237

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1074 (34%), Positives = 572/1074 (53%), Gaps = 60/1074 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L  HS YS+L+   S+   + K    Q PA+A+TD  NLF A+EF +      I+PII
Sbjct: 4    IPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKPII 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+L +          + K+       ++LL    EGY+ L  L S  Y  +      RI
Sbjct: 64   GCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT-EGFYYVPRI 120

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L +  ++GLI L+   SG + +A    S +  EK LL ++ LF +  +  +Q H+ 
Sbjct: 121  DRDLLSQ-HSKGLICLSACLSGSVAQAALE-SEEDLEKDLLWYQDLFQEDFFSEVQLHKS 178

Query: 192  YDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             +                            V+  +    +P VATN+  +L+ +D+ AH+
Sbjct: 179  SEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWLAHE 238

Query: 230  VLM----------AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            +L+          A  ++ + + K +   + + Y K+   M  +F+  PE + NT  +A 
Sbjct: 239  ILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQGMAELFAAHPETITNTCIVAE 298

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQ---GAI 328
            RC   L       P ++ +         E E        L      GL  +      G I
Sbjct: 299  RCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELLGHI 358

Query: 329  AKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            AK +  +D     ++RL  E ++I       Y LIV D I WAK + IPVGPGRGSGAGS
Sbjct: 359  AKKFPGEDPLTLVKERLKLESSIIIPKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGAGS 418

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            V  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + VA
Sbjct: 419  VMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKDNVA 478

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            QIITFG+++AK A++DVGR L  P ++V+ + K IP+  A   S   +  D   R+  + 
Sbjct: 479  QIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITSA--LEADPELRQLYVD 536

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++MK +E
Sbjct: 537  DAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKPVE 596

Query: 565  KAGLIKFDFLGLKTLTLLQ-KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              G++K DFLGLKTLT +   +     + G+ +  + IP DD  T+ LL    T+GIFQ+
Sbjct: 597  SVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGIFQM 656

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES GM+   + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++P+LK
Sbjct: 657  ESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPILK 716

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S A+ NGI  
Sbjct: 717  ETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANGIDP 776

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
            +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ 
Sbjct: 777  SIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEKVG 836

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862
            K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E    + P+
Sbjct: 837  KLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKNGPY 896

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             SL+DF  R D KK+ ++ LE+LV AG  DCF  ++   L  L+++       +K     
Sbjct: 897  KSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEAATG 956

Query: 923  HENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                F+ +          ++ E     +     + E+ +LG Y + HP+D  + +L  + 
Sbjct: 957  VLTFFSLDSMARDPVRITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLPFLS 1016

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFF 1032
            +    +      G  IR   ++     K  + +  +   +  S+    YE   +
Sbjct: 1017 VVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKKFALLQVSDEVDSYELPIW 1070


>gi|294647200|ref|ZP_06724799.1| putative DNA polymerase III subunit alpha [Bacteroides ovatus SD CC
            2a]
 gi|294809189|ref|ZP_06767905.1| putative DNA polymerase III subunit alpha [Bacteroides xylanisolvens
            SD CC 1b]
 gi|292637487|gb|EFF55906.1| putative DNA polymerase III subunit alpha [Bacteroides ovatus SD CC
            2a]
 gi|294443583|gb|EFG12334.1| putative DNA polymerase III subunit alpha [Bacteroides xylanisolvens
            SD CC 1b]
          Length = 1268

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/1142 (31%), Positives = 563/1142 (49%), Gaps = 124/1142 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--------- 60
             FVHL VH+ YSLL+G  S+  ++DK   +    IA+TD  N+F   EF+          
Sbjct: 3    DFVHLHVHTQYSLLDGQASVARLVDKAMQNGMKGIAVTDHGNMFGIKEFTNYVNKKNSGP 62

Query: 61   -------------------KA--CAAGI---------------QPIIGCQLDIDMQDNLK 84
                               +     A I               +P+IGC++ +       
Sbjct: 63   KGEVKDLKKRIAGIEAGTIECADKEAEIATCKAKIVEAENKLFKPVIGCEMYVA---RRT 119

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
            M  +   P  +   +++L    +GY  LI+LVS  +         R   S L++   EGL
Sbjct: 120  MDLKEGKPDQSGYHLIVLAKNEKGYHNLIKLVSHAWTRG-YYMRPRTDRSELEKYH-EGL 177

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------GYD 193
            I+ +    G + +         AE+ +  +K LFGD  Y+ +QRH+              
Sbjct: 178  IVCSACLGGEVPKRITAGQFAEAEEAIQWYKNLFGDDYYLEMQRHKATVPRANHECYPLQ 237

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +++ A    + L+ TN+  F+ EE+ EAHD L+ ++    +    R   T   +
Sbjct: 238  VNVNKYLIEYAKKFNVKLICTNDVHFVDEENAEAHDRLICLSTGKDLDDPSRMLYTKQEW 297

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK--------------- 298
            +K R EM  +F+D+PEAL NT+EI  +  +    HAPI+P F                  
Sbjct: 298  MKTREEMNELFADVPEALSNTLEILDKVEYYSIDHAPIMPTFAIPEDFGTEEGYRAKFTE 357

Query: 299  -----------ECDDIQKEEENELRNKAVAGLEV---------------RLAQGAIAKGY 332
                         + +  EE+ + + K + G +                      I    
Sbjct: 358  KDLFDEFTQDEHGNVVLSEEDAKAKIKRLGGYDKLYRIKLEGDYLAKLAFDGAKRIYGEP 417

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALT 391
             +++ ++R++FEL ++  M F GYFLIV DFI  A+K   + VGPGRGS AGS  AY L 
Sbjct: 418  LSEEVKERMNFELYIMKTMGFPGYFLIVQDFINAARKELGVSVGPGRGSAAGSAVAYCLG 477

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT IDP+++ LLFERFLNPDR+S+PD D+DF  D R EV+R+V NKYG E+VA IIT+G+
Sbjct: 478  ITKIDPIQYDLLFERFLNPDRISLPDIDVDFDDDGRGEVLRWVTNKYGQEKVAHIITYGT 537

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARLA-DPSV 508
            +  K A++DV R  ++P S+ DRL KL+P+           AI      + A  + DP V
Sbjct: 538  MATKLAIKDVARVQKLPLSESDRLAKLVPDKIPDKKLNLRNAIEYVPELQAAEASSDPLV 597

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIE 564
               ++ ++ LEG  R    HA G +I    ++  VP+      +    + VTQ+    IE
Sbjct: 598  RDTIKYAKMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVIE 657

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              GLIK DFLGLKTL++++++++ +   R V+VD+  I   D  TY L +   T+G FQ 
Sbjct: 658  DTGLIKMDFLGLKTLSIIKEAVENIRLSRNVEVDVDAIDICDPATYKLYSDGRTIGTFQF 717

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  + +RK+G++ I    P+++  LK
Sbjct: 718  ESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIDRKHGRKPIEYDIPVMEKYLK 777

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+++++D  K +FI G  KNG   
Sbjct: 778  DTYGITVYQEQVMLLSRLLADFTRGESDALRKAMGKKLRDKLDHMKPKFIEGGRKNGHDP 837

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA M+  + N+  I 
Sbjct: 838  KVLEKIWTDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPPEYMAAVMSRSLSNITDIT 897

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861
            K   + +   IQ + P VN   + F V  D  I + L A+KGVG      IME    + P
Sbjct: 898  KLMDECKAMGIQTLGPDVNESNLKFTVNHDGNIRFGLGAVKGVGEAAVHSIMEERSKNGP 957

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQ 913
            F  + DF  RV+    N++ +E L  AG  D F    R Q           L+ + +Y  
Sbjct: 958  FLGIFDFVQRVNLNACNKKNMECLALAGGFDSFPELKREQYFAVNSKGEVFLETLMRYGN 1017

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              + ++     ++F  E         + +     +   R   E+ ++G Y S HPLD + 
Sbjct: 1018 RYQADKAAAFNSLFGGENVIDVATPEIPQGVERWSDLDRLNRERDLVGIYLSAHPLDEFS 1077

Query: 973  PILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +L  +      +        G  I +  +V S ++  ++ G+  G     + +   E  
Sbjct: 1078 IVLEHVCNTRMADLEDKAALVGREITMGGIVTSVRRGVSKNGNPYGIAKIEDYSGSTEIP 1137

Query: 1031 FF 1032
            F+
Sbjct: 1138 FW 1139


>gi|302525308|ref|ZP_07277650.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4]
 gi|302434203|gb|EFL06019.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4]
          Length = 1195

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/1082 (31%), Positives = 528/1082 (48%), Gaps = 64/1082 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    SFVHL VH+ YS+L+GA  +  +  + A    PA+ +TD  N++   EF Q +  
Sbjct: 1    MSND-SFVHLHVHTEYSMLDGAAKIGPLFAEAARLGMPAVGMTDHGNMYGGDEFFQTSKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVLLVSTAE 107
             GI+PIIG +  +  +                           +       + ++   A 
Sbjct: 60   HGIKPIIGIEAYVAPESRFHKKPVFWGQASQRGSDEFGEGGDVSGGGAYTHMTMVAGNAT 119

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            G + L +L S   +     +  R+    + E   EG+I  TG  SG +         + A
Sbjct: 120  GLRNLFKLSSLASIQ-GYYRKPRMDRELIAE-NAEGIIATTGCPSGEVQTRLRLGQREAA 177

Query: 168  EKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
             +    +K +FG    Y+ L  H    +R     ++++    +LP +ATN+S +++++  
Sbjct: 178  IQAASDYKDIFGAGNFYLELMDHGLPIERSVREGLLEIGKLLDLPPLATNDSHYVTKDQA 237

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            + H  L+ V     ++   R +   D Y    ++ +  + D          +        
Sbjct: 238  DTHSALLCVQAGKTLNDPTRFKFDGDGYFLKSAQEMREYWDKEVPGAADNTLLIAERVES 297

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                      +          E   LR++   GL+ R   G          Y +R D+EL
Sbjct: 298  YEDVYAHKDRMPVFDVPEGHTEATWLRHQVAEGLKWRFPDG------IPDGYEERCDYEL 351

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            NVI    F  YFLIVAD IQ A++  I VGPGRGS AG++ AYAL IT++DP+   LLFE
Sbjct: 352  NVIEGKGFPAYFLIVADLIQHAREVGILVGPGRGSAAGALVAYALGITNLDPIPQKLLFE 411

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+RMSMPD DIDF   RR E+IRY  +KYG +RVAQ+ITFG+++ KAA++D  R  
Sbjct: 412  RFLNPERMSMPDIDIDFDDRRRGEMIRYATDKYGADRVAQVITFGTIKTKAAIKDSARVH 471

Query: 466  --QMPYSQVDRLCKL-IPNDPAHPV--------SLQAIADDSRFREARLADPSVDRLLEI 514
              Q  YS  D++ K   P   A  +          +  A+ +  R     D     + E 
Sbjct: 472  FGQPGYSIADKISKALPPPIMAKDIPLSGIVDSKHERYAEAAEVRTLVETDEECKTIFET 531

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            ++ LEGL R+A  HA  +++   PL+  +P+++       +T ++    E  GL+K DFL
Sbjct: 532  ARGLEGLIRNAGVHACAVIMSSEPLTDAIPVWQRD-DGSIITGWDYPSCEAIGLLKMDFL 590

Query: 575  GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+ LT++  +L+ +   RG ++DL  + FDD E Y LL    TLG+FQL+   MR  L 
Sbjct: 591  GLRNLTVIGDALENIKANRGEEIDLDRLGFDDPEAYKLLGRGDTLGVFQLDGGAMRDLLR 650

Query: 634  GMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQG 687
             M P   EDIIA+++LYRPGP+       Y +RKN +++I  IHP ++      L ET G
Sbjct: 651  RMLPTGFEDIIAVLALYRPGPMGMNAHNDYADRKNNRQQIKPIHPQLEEPLREILSETYG 710

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN-----GIS 742
            +I+YQEQ+MQIAQ ++GY++  AD LRRAMGKK KE ++K+ E F  G   +     G S
Sbjct: 711  LIVYQEQIMQIAQKVAGYTMGRADTLRRAMGKKKKEVLEKEYEGFEEGMKSSPLVEGGFS 770

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
                  +++ +  FA Y FNKSHAAAY +I+Y TA++K +Y  E++AA +T   DN +K 
Sbjct: 771  PEAVKALWDTILPFAGYAFNKSHAAAYGLIAYWTAYLKANYTAEYMAALLTSVGDNKDKS 830

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KP 861
              +  + R+  I+++PP VN   + F    N I + L A++ VG      I++   +   
Sbjct: 831  AIYLSECRRLGIKVLPPDVNESALRFAAVGNDIRFGLGAVRNVGANVVESIIKTREEKGK 890

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + S  DF  + +    N+RV+ESL+ AGA D  G++R+ ++Q  ++  +    +++    
Sbjct: 891  YSSFTDFLDKSELVACNKRVIESLIKAGAFDSMGHTRLSMIQVHEDAVEAVVPLKRQEAM 950

Query: 922  KHENIFAHEKGTFSDKITLE----------KFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
               ++F    G                                E+ +LG Y S HPLD  
Sbjct: 951  GQFDLFGSFGGGDDAAEAAPSSSPLAHLKFGEEEYPRKQLLAYEREMLGLYVSAHPLDGA 1010

Query: 972  KPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            + ILRK   K     +A       + ++ ++ S +++  +KG      T  +     E  
Sbjct: 1011 ERILRKHAPKPIAALLADPPKEGEVVISGLLTSLERRVNKKGEPWAICTVEDMDAAIEVL 1070

Query: 1031 FF 1032
            FF
Sbjct: 1071 FF 1072


>gi|313886877|ref|ZP_07820581.1| DNA polymerase III, alpha subunit [Porphyromonas asaccharolytica
            PR426713P-I]
 gi|312923674|gb|EFR34479.1| DNA polymerase III, alpha subunit [Porphyromonas asaccharolytica
            PR426713P-I]
          Length = 1287

 Score =  700 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/1125 (30%), Positives = 547/1125 (48%), Gaps = 109/1125 (9%)

Query: 6    EKSPS-----FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
              SPS     +V L VHS YS+L+G   +  ILDK  A   P IA+TD   ++    F+ 
Sbjct: 22   PHSPSAGTRMYVPLHVHSHYSILDGMAPVEKILDKAVACGMPGIALTDHGAMYGIKNFTN 81

Query: 61   KA-------CAAGIQ-----------------------------------PIIGCQLDID 78
             A         A I+                                    I+GC++ + 
Sbjct: 82   YANDKINGDKLAQIKSLRKQIKELEADASNADEIARIKGEIKTIEQSLFKAIVGCEVYVA 141

Query: 79   -------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
                    +D     N  ++   +   ++LL    +GY+ LI++VS  +         RI
Sbjct: 142  RRSLELKDKDAKDPDNPTRSIDRSGYHLILLAKNLQGYRNLIKMVSIAW-EHGEYYKPRI 200

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L E   EG+I  +    G I +         A K  L +K+ FG+  Y+ +  H  
Sbjct: 201  DKKLLSE-HHEGIIASSACLGGEIAQHILHGRLDEARKTALWYKETFGEDYYLEIMLHPN 259

Query: 192  YDR-----------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             D                +V+++     + ++ATN++ FL+EED EAHD L+ +  ++ +
Sbjct: 260  SDPLGGQETYHKQLQVAQEVIKMGQELGIKVIATNDTHFLNEEDAEAHDHLICMTTNSPI 319

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            S  +R R T   +LK+  EM ++F+D P+ LENT+EI  +  +    HAP++P F   E 
Sbjct: 320  SDPNRMRYTKQEWLKSPEEMTALFADYPDVLENTLEICNKVEYYSIDHAPLMPHFELPEG 379

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                  E++ LR+    G + R             + ++R+D EL VI  M F GYFL+V
Sbjct: 380  F---ASEDDYLRHLTYEGAKKRYGDPV------PPEVQERIDMELGVIQNMGFPGYFLVV 430

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI  A++  + VGPGRGS AGS  AY L+IT I+P+++ LLFERFLNPDR+SMPD DI
Sbjct: 431  QDFIAAARQLGVRVGPGRGSAAGSAVAYCLSITQIEPIKYGLLFERFLNPDRISMPDIDI 490

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF    R  V+ +V NKYG + V+ IIT  ++  K A++ V R  ++P  Q +RLCKLIP
Sbjct: 491  DFDDKNRWRVLEWVTNKYGRDHVSNIITLTTMATKGAIKGVARVEELPLDQANRLCKLIP 550

Query: 481  NDPAHPVSL----QAIADDSRFREA-RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            +     V        + ++  FREA    +  +   +  +++LEG       HA G++I 
Sbjct: 551  DRAPEGVKHLTLDWMVQNNQEFREASVSQNEQLANTIRYARQLEGTASTTGVHACGVIIS 610

Query: 536  DRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
              P+S +VP+      D      V Q+  K IE  GLIK DFLGL+TL+++  +L  +  
Sbjct: 611  GPPVSDVVPLSTAIDPDTNERKLVAQYEGKVIEPTGLIKMDFLGLQTLSIINDALQNIKM 670

Query: 592  RGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                  D+  IP DD +T+ L +   T+G FQ ES GMR+ L+ ++P   +D++A+ +LY
Sbjct: 671  SYGIDLDIDTIPVDDPKTFELYSRGDTVGTFQFESPGMRKYLQQLEPTEFKDLVAMNALY 730

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+DNI  +  RK G+++I    P ++P LK+T G+ +YQEQVM ++++L  ++  ++
Sbjct: 731  RPGPMDNIPTFIERKLGRQEITYDLPEMEPYLKDTYGITVYQEQVMILSRVLGDFTRGDS 790

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D LR+AMGKK ++EM K + +F+      G  +     I++   KFA Y FNKSH+  YA
Sbjct: 791  DSLRKAMGKKKEKEMAKYRIKFVENGVAKGHPRDTLERIYDGWQKFASYAFNKSHSVCYA 850

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++YQTA++K HYP +F+AA +T      +K+ K+ ++ +   +++  P VN     F  
Sbjct: 851  WVAYQTAYLKAHYPAQFMAALLTCNQSKSDKLTKYLEEVQHMGLEVKGPDVNESFTAFSA 910

Query: 831  G-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              +  I + L  I  VG + A  I++   +   +  + DF  R D    +RR LE+L+ +
Sbjct: 911  NKEGVIRFGLGGISHVGLSVAEAIIQEREEHGAYQDVYDFFQRTDLSNCSRRALEALILS 970

Query: 889  GALDCFGYSRMQLLQSLD-----------------NIQKYAQWVEKNRTNKHENIFAHEK 931
            GA D FG  R      +                   + +Y + +E  RT    ++F    
Sbjct: 971  GAFDNFGIEREVYFAPIAKSGVSSLSYGKDETFLTALMQYGKILESERTQVQASLFGDSD 1030

Query: 932  GTFSDKITLE--KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
             +      L        +   R   EQ  +G Y S HPLD Y  I+  +      E    
Sbjct: 1031 PSVKLPKPLPPKDVEPWSHLERLTKEQTYIGMYLSAHPLDPYAFIIENLCNCPASELDQF 1090

Query: 990  IR-G-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               G   +  A +V   +Q  +++      +   + +   E   F
Sbjct: 1091 AELGLTQLTCAGLVTKVRQGISKRNEPYAIIQIEDTSGTGEIPLF 1135


>gi|325141631|gb|EGC64093.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 961-5945]
 gi|325141663|gb|EGC64124.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 961-5945]
 gi|325141697|gb|EGC64157.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 961-5945]
          Length = 1144

 Score =  700 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1038 (37%), Positives = 584/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKTCRG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+PI    + I                      +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A+   +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSLDDYLIKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L K
Sbjct: 406  FDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465

Query: 478  LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+    A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  VDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++  +   +       +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQVEIMV 1014


>gi|296313886|ref|ZP_06863827.1| DNA polymerase III, alpha subunit [Neisseria polysaccharea ATCC
            43768]
 gi|296839514|gb|EFH23452.1| DNA polymerase III, alpha subunit [Neisseria polysaccharea ATCC
            43768]
          Length = 1144

 Score =  700 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1038 (37%), Positives = 582/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+PI    + I                      +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169

Query: 184  VNLQRHR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR           S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPECPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A    +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSLDDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L K
Sbjct: 406  FDVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465

Query: 478  LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+    A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKSTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  VDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLVDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++  +   +       +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQIEIMI 1014


>gi|237802974|ref|YP_002888168.1| DNA polymerase III subunit alpha [Chlamydia trachomatis B/Jali20/OT]
 gi|231274208|emb|CAX11002.1| DNA polymerase III alpha subunit [Chlamydia trachomatis B/Jali20/OT]
          Length = 1237

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1074 (34%), Positives = 573/1074 (53%), Gaps = 60/1074 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L  HS YS+L+   S+N  + K    Q PA+A+TD  NLF A+EF +      I+PII
Sbjct: 4    IPLHCHSQYSILDATCSINKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKPII 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+L +          + K+       ++LL    EGY+ L  L S  Y  +      RI
Sbjct: 64   GCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT-EGFYYVPRI 120

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L +  ++GLI L+   SG + +A    S +  EK LL ++ LF +  +  +Q H+ 
Sbjct: 121  DRDLLSQ-HSKGLICLSACLSGSVAQAALE-SEEDLEKDLLWYQDLFQEDFFSEVQLHKS 178

Query: 192  YDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             +                            V+  +    +P VATN+  +L+ +D+ AH+
Sbjct: 179  SEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWLAHE 238

Query: 230  VLM----------AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            +L+          A  ++ + + K +   + + Y K+   M  +F+  PE + NT  +A 
Sbjct: 239  ILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQGMAELFAAHPETITNTCIVAE 298

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQ---GAI 328
            RC   L       P ++ +         E E        L      GL  +      G I
Sbjct: 299  RCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELLGHI 358

Query: 329  AKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            AK +  +D     ++RL  E ++I       Y LIV D I WAK + IPVGPGRGSGAGS
Sbjct: 359  AKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGAGS 418

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            V  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + VA
Sbjct: 419  VMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKDNVA 478

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            QIITFG+++AK A++DVGR L  P ++V+ + K IP+  A   S   +  D   R+  + 
Sbjct: 479  QIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITSA--LEADPELRQLYVD 536

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++MK +E
Sbjct: 537  DAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKPVE 596

Query: 565  KAGLIKFDFLGLKTLTLLQ-KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              G++K DFLGLKTLT +   +     + G+ +  + IP DD  T+ LL    T+GIFQ+
Sbjct: 597  SVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGIFQM 656

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES GM+   + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++P+LK
Sbjct: 657  ESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPILK 716

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S A+ NGI  
Sbjct: 717  ETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANGIDP 776

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
            +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ 
Sbjct: 777  SIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEKVG 836

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862
            K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E    + P+
Sbjct: 837  KLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKNGPY 896

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             SL+DF  R D KK+ ++ LE+LV AG  DCF  ++   L  L+++       +K     
Sbjct: 897  KSLQDFVQRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEAATG 956

Query: 923  HENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                F+ +          ++ E     +     + E+ +LG Y + HP+D  + +L  + 
Sbjct: 957  VLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLPFLS 1016

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFF 1032
            +    +      G  IR   ++     K  + +  +   +  S+    YE   +
Sbjct: 1017 VVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKKFALLQVSDEVDSYELPIW 1070


>gi|288819165|ref|YP_003433513.1| DNA polymerase III alpha subunit [Hydrogenobacter thermophilus TK-6]
 gi|288788565|dbj|BAI70312.1| DNA polymerase III alpha subunit [Hydrogenobacter thermophilus TK-6]
          Length = 1155

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1061 (36%), Positives = 577/1061 (54%), Gaps = 71/1061 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ YSLL+GA+ + ++  K       A+AITD  NLF  LEF +     GI+PI
Sbjct: 4    FVHLHLHTQYSLLDGAIKIKDLAKKARELGYKAVAITDHGNLFGILEFYRSMKKEGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            IG +             +             ++L+     G + L++L S  Y  +    
Sbjct: 64   IGMEAYFTTGSRHDRKGKASEDNITDRYNHHLILIAMNDTGLKNLMQLSSISYQ-EGFYY 122

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              RI    L +   EGLI +T    G           + A   +  FK LFG+ LY+ LQ
Sbjct: 123  KPRIDYEVLSQ-HCEGLIAITACLKGVPTHYASLGDEEKATHWVKKFKDLFGENLYLELQ 181

Query: 188  RHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
             ++  ++   ++ ++ +A    + L+ATN+S +L+ +D  AH VLMAV     + +  + 
Sbjct: 182  SNQLPEQEIANRILINIAKKMGVKLIATNDSHYLNPDDRLAHQVLMAVQMKKTLMEIKQE 241

Query: 246  ---PRVTPDHYLKNRSEMVSIFS----DLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                      +     E+   F        EAL+NT+E+A +     ++       ++  
Sbjct: 242  SAIKCSNEGLHFAGPEEVWEKFKGKFEGWEEALKNTLEVAEKVQDSFELLE--NRGYLFP 299

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            + D   K     LR+ AV GL  R+ QG       + +Y  RL++EL V+ RM F GYFL
Sbjct: 300  KYDTEDKTTAEFLRHLAVKGLRQRIQQGL---AKDSPEYWNRLEYELEVVFRMGFEGYFL 356

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV DFI WAK  +IPVGPGRGS AGS+ A++L ITDIDP++  LLFERFLNP+R+SMPD 
Sbjct: 357  IVQDFINWAKSQSIPVGPGRGSAAGSLLAFSLGITDIDPIKHGLLFERFLNPERISMPDI 416

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC ++RD+VI YV++KYG E VAQIIT+  ++AK  LRDV RAL +PYS  D L KL
Sbjct: 417  DVDFCMEKRDKVIEYVKSKYGEENVAQIITYNVMKAKQTLRDVARALGVPYSVADSLAKL 476

Query: 479  IPNDP--AHPVSLQAIADDS--------------------RFREARLADPSVDRLLEISQ 516
            IP        +SL+ +                        +FR+    +P +  L+EI+ 
Sbjct: 477  IPQGDVQGTWLSLEEMYLVPIKELLDKYGHHRRDIEDHVSKFRKMCSENPEIKTLVEIAL 536

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            KLEGL RH S HAAG+VI   PL + +P+Y D +  +  TQF+M  +E+ GLIK DFLGL
Sbjct: 537  KLEGLTRHTSLHAAGVVISPLPLRERIPLYYD-KDQVLATQFDMVNLEELGLIKMDFLGL 595

Query: 577  KTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            KTLT L++    + +R    ++   +P DD   Y LL    T G+FQLES GM+  L+ +
Sbjct: 596  KTLTELERMKQLVEERHKVSINYLSLPLDDPLVYELLRKGNTTGVFQLESVGMKNLLKRL 655

Query: 636  QPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
            +PD  +DI+A+++LYRPGP+ +  +  Y NRK+GKE++  I P ++P+LK+T G+I+YQE
Sbjct: 656  EPDSFDDIVAVLALYRPGPLKSGLVDSYINRKHGKEQVDYIFPELEPVLKDTYGIIVYQE 715

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVM+I+Q+L+G++  +AD LR+A+GKK KE M + KE+FI GA + G ++   + ++  +
Sbjct: 716  QVMKISQVLAGFTPGQADTLRKAIGKKKKEVMQEMKEKFIRGALERGYNQEKVIKLWNDI 775

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             +FA Y FNKSH+ AY  ISY TA+MK HYP EF    ++ E  + + I    +DA+ F 
Sbjct: 776  EEFASYSFNKSHSVAYGYISYWTAYMKAHYPEEFFVVKLSTEKSDKKFI-NLIKDAKSFG 834

Query: 814  IQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
             +I+ P +N   VDF +    +I + LA IKGVG  TAR I+EA  +  +  L DF   +
Sbjct: 835  FEILQPDINESHVDFTIESKGKIRFGLARIKGVGEDTARSIVEAR-NGRWKGLGDFLKSI 893

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
            D +K+N+RVLE+L+ AGA D  G SR       + +  Y     K       ++F  +  
Sbjct: 894  DQRKVNKRVLEALIKAGAFDFTGESR-------EKLLSYMDKASKGGVLPLGDLFGTKVE 946

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               D                + E+ VLG Y S HP+D ++ +L   G   + E +  ++ 
Sbjct: 947  QKVDP--------------LKYEKEVLGIYISKHPVDPFEKLLS--GKVKWLEELEELQE 990

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   +V   + KKT+ G+ +      +      A  FP
Sbjct: 991  GTYNFVGVVSDLKVKKTKNGTYMATFNLIDKTGIGHAVAFP 1031


>gi|262376213|ref|ZP_06069443.1| DNA polymerase subunit III [Acinetobacter lwoffii SH145]
 gi|262308814|gb|EEY89947.1| DNA polymerase subunit III [Acinetobacter lwoffii SH145]
          Length = 1190

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1037 (37%), Positives = 580/1037 (55%), Gaps = 47/1037 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ +S+ E  + + +++     +Q PA+A+TD +NL +A++F  K  + GI+PI
Sbjct: 3    FVHLGIHTEFSITESIVRIPDLVKAAEEEQMPALALTDLSNLHAAVKFYGKCLSKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++  ++                + LL  T  G++ L ELVS  ++  Q      
Sbjct: 63   LGSEIRLNDAEH---------------RMTLLAMTNTGWRNLTELVSEGFISGQQLDIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   W+     E +I L G     + +    ++ Q AE  L  + + FG+R+Y+ L R  
Sbjct: 108  VQKQWILNQP-EDMIALLG-MHSDVGKMLMSSNPQKAEPLLEEWVEKFGNRVYLALTRTN 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      + V+LA  + + +VA N+  F++ +DYEAH+  + +A   V+    RP+  
Sbjct: 166  RPDEDNFILEAVKLAKKYNIGVVAHNDVHFMTRDDYEAHEARVCIADGYVLGDNRRPKTY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ Y K+  EM ++FSD+P A+ENT  IA+RC+  LQ+    LP +   E        +
Sbjct: 226  SPEQYFKSAEEMTALFSDIPSAIENTYHIAKRCNVTLQLGKYFLPDYPIPEG----HTID 281

Query: 309  NELRNKAVAGLEV------RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE          Q         + Y +R+++E+N+I  M F GYFLIV D
Sbjct: 282  TFFAHLSKEGLEERLNFLYPPEQRDEDWPEIRKPYDERIEYEINIINSMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWSKSNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYELLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG + V+QI TFG++ AK A+RDV R L   Y   DR+ K+IP  
Sbjct: 402  CIAGRDRVIDYVARTYGRDAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMIPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537
            P     L+++  + + ++      + D      + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGLSLLESLEAEPQLKDIVTNPSNPDHDDAAEIWEMALKLEGITRNTGKHAGGVVISPT 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596
             ++    +  D      V QF+   +E AGL+KFDFLGL+ LT+++ ++  + +R     
Sbjct: 522  KITDFSAVMCDADGTGRVAQFDKDDVESAGLVKFDFLGLRNLTVIEDAVKNINKRIKADK 581

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ I  +D + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  PLDIAYIQLEDKDAYLVFANANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +   +        +HPL++ +L+ T G+++YQEQVMQ AQ  +GY+L  AD+LR
Sbjct: 642  MDLIPDFI-HRMHGGDFEYLHPLLEGVLEPTYGIMVYQEQVMQAAQYCAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ FI GASK  I +  A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRQIFIEGASKKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDN 833
            QTAW+K HYP EFL+A +T EM N + +     D R+ N++++PPSVN     F  + + 
Sbjct: 761  QTAWLKAHYPAEFLSAVLTSEMQNTDNVVFLIDDCRKNNLEVLPPSVNMSLYQFHAIDEQ 820

Query: 834  RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L AIKGVG    + ++++ A + PF  L DFC R+D KK+N+R LE+L+ +GALD
Sbjct: 821  TIVYGLGAIKGVGEAAMQSVIDSRAQEGPFRDLFDFCHRIDLKKINKRTLEALIRSGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A+    NR     ++F   +                  VR 
Sbjct: 881  CLGIDRADLMAQLPEAVQAAEQARSNRETGIMDLFGEVEEVQRKPSK--PVKPWADEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y +GHP+DVY+  L+        E   T RG     A +VV          
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRNELKAFVPCQINELTPTRRGVTTVFAGLVVDIANFP---- 994

Query: 1013 SRIGWVTFSEPAKEYEA 1029
            +R+  +T  +     E 
Sbjct: 995  NRMM-MTLDDGTARIEI 1010


>gi|256423694|ref|YP_003124347.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588]
 gi|256038602|gb|ACU62146.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588]
          Length = 1214

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1095 (32%), Positives = 555/1095 (50%), Gaps = 87/1095 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-------- 62
            F HL VH+ YSLL+GA  + ++  K  A  QPA+AITD  N+F A +F  +A        
Sbjct: 3    FSHLHVHTQYSLLDGAADIKSLYKKAMASNQPALAITDHGNMFGAFQFVAEAYNNRLNPE 62

Query: 63   ----CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
                    ++PI+GC+  +   +N       +         VLL    EGY+ LI+L S 
Sbjct: 63   DPKDKRLKVKPIVGCEFYVV--ENRFKRAFTREEKDIRNHQVLLAKNDEGYRNLIKLCSL 120

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             Y+     +  RI    + +   +GLI  T      + RA      +  E+    +  +F
Sbjct: 121  GYIEGLYGKYPRIDKELILQYH-KGLIATTCCLGASVPRAILKKGEEAGEEEFKWWLDIF 179

Query: 179  GDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            G+  YV LQRH   ++      +++ A  H + ++A+N+S ++ + D  AHD+L+ +   
Sbjct: 180  GEDYYVELQRHGIPEQEKVNESLIKFASKHNVKIIASNDSHYVDQADANAHDILLCINTG 239

Query: 238  TVVSQKDRP---------------RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
               S                          Y K   EM ++F DLP+A++NT EI  +  
Sbjct: 240  EKKSTPTMKDFSDDDVSMKNKRFAFYNDQFYFKTTEEMTALFQDLPQAIDNTNEIVDKVE 299

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
             +      +LP F           ++  LR+  + G                 +  +R++
Sbjct: 300  LLDLKRDILLPNFPIPPPF---LTQDQYLRHITMEGAHK-------KYAEVTAEVEERIN 349

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            FEL+VI  M F+GYFLIV+DFI+  +   + +GPGRGS AGS  AY + IT+IDP++++L
Sbjct: 350  FELSVIENMGFAGYFLIVSDFIKAGRDLGVFIGPGRGSAAGSAVAYCIGITNIDPIKYNL 409

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R SMPD D DF  + R +VI YV NKYG  +VAQIIT+G++ AK +++DV 
Sbjct: 410  LFERFLNPERKSMPDIDTDFDDEGRQKVIDYVVNKYGKNQVAQIITYGTMAAKMSIKDVA 469

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQA---------------------IADDSRFREA 501
            R + +P  + + L K++P+ P   +                         + +  R RE 
Sbjct: 470  RVMDLPLVESNMLAKMVPDKPGIQLDRIFNAPIDEGEKSLAEKEGLGPEDLENVKRLREL 529

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
                     +L  +  LEG  R+   HAAGI+I  + L  L+P+     SDL VTQF   
Sbjct: 530  IKGQDLQGEVLREACVLEGSVRNTGIHAAGIIIAPKDLYDLIPVSTAKDSDLLVTQFEGS 589

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
             IE AG+IK DFLGLKTLT+++ +L+ +    G+ + +  IP DD +TY L     T   
Sbjct: 590  IIESAGVIKMDFLGLKTLTIIKGALELIRTNHGIDISIDDIPLDDAKTYELYQKGETNAT 649

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
            FQ ES+GM++ L  ++PD  +D+IA+ +LYRPGP++ I ++  RK+G E+ V     ++ 
Sbjct: 650  FQFESAGMQKYLRELKPDRFDDLIAMNALYRPGPLEYIPLFIRRKHGLEETVYDLAEMEE 709

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
             L +T G+ +YQEQVM ++Q L+ +S  +ADVLR+AMGKK K  +DK K++F+ G + NG
Sbjct: 710  YLNDTYGITVYQEQVMLLSQKLANFSKGDADVLRKAMGKKQKAVLDKMKKQFMEGCAANG 769

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
                +   ++     FA Y FNKSH+  YA ++YQTA++K HYP E++AA +     N+E
Sbjct: 770  HDLKVCDKVWTDWEAFASYAFNKSHSTCYAFVAYQTAYLKAHYPAEYMAAVLN-NASNIE 828

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD 859
            KI  F ++A++  I ++PP VN     F V    +I + LA +KGVG     +I+E    
Sbjct: 829  KITFFMEEAKRMGIDVLPPDVNESFKGFAVNKQGQIRFGLAGLKGVGEAAVENILEERQK 888

Query: 860  KP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQ--------SLDNIQ 909
               + ++ +   RV+ + +N++ LE+L  +GA DCF    R Q            LD I 
Sbjct: 889  GSNYKNIFEMIKRVNQRAVNKKSLEALAMSGAFDCFPELHRAQYFHKPDNDNTTGLDKIV 948

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            K+ Q V         ++F  +     +   +         ++  NE+ V G Y SGHPLD
Sbjct: 949  KFGQQVSAGAATTMSSLFGADDMPEVEPPKIPPCDPWPLILKLNNEREVTGIYISGHPLD 1008

Query: 970  VYKPILRKMGIKGYEESVATI------------RGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             Y+   R   +   +E V               R  N RLA  V   Q++ +R   + G 
Sbjct: 1009 DYRFESRYYNMNTVQELVEYQADLQAPGNAKSGRERNFRLAVYVTGAQERISRNNRQFGI 1068

Query: 1018 VTFSEPAKEYEANFF 1032
            +T  + + ++E   +
Sbjct: 1069 MTIEDYSGKFEFALW 1083


>gi|319409850|emb|CBY90162.1| DNA polymerase III alpha subunit [Neisseria meningitidis WUE 2594]
          Length = 1144

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1038 (37%), Positives = 584/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKTCRG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+PI    + I                      +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A+   +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSLDDYLIKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L K
Sbjct: 406  FDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465

Query: 478  LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+    A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  VDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++  +   +       +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQVEIMV 1014


>gi|121634255|ref|YP_974500.1| DNA polymerase III, alpha subunit [Neisseria meningitidis FAM18]
 gi|120865961|emb|CAM09698.1| putative DNA polymerase III, alpha subunit [Neisseria meningitidis
            FAM18]
 gi|325197670|gb|ADY93126.1| DNA polymerase III, alpha subunit [Neisseria meningitidis G2136]
          Length = 1144

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1038 (37%), Positives = 585/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+P+    + I   D                  +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPVGAADVWIGNPD----------APDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A+   +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSLDDYLIKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L K
Sbjct: 406  FDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465

Query: 478  LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+    A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  IDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++  +   +       +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQVEIMV 1014


>gi|227488551|ref|ZP_03918867.1| DNA polymerase III subunit alpha [Corynebacterium glucuronolyticum
            ATCC 51867]
 gi|227543156|ref|ZP_03973205.1| DNA polymerase III subunit alpha [Corynebacterium glucuronolyticum
            ATCC 51866]
 gi|227091445|gb|EEI26757.1| DNA polymerase III subunit alpha [Corynebacterium glucuronolyticum
            ATCC 51867]
 gi|227180965|gb|EEI61937.1| DNA polymerase III subunit alpha [Corynebacterium glucuronolyticum
            ATCC 51866]
          Length = 1188

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/1072 (30%), Positives = 519/1072 (48%), Gaps = 51/1072 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S SFVHL  H+ YS+L+G   ++ + +++     PA+ +TD  N+F +  F +K  A
Sbjct: 1    MSNS-SFVHLHNHTEYSMLDGMAKVDLLAEEVKRQGMPAVGMTDHGNMFGSDAFYRKMTA 59

Query: 65   AGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             GI+PIIG +  +                       +         ++     G + L  
Sbjct: 60   EGIKPIIGIETYMAPDSRFNKKRVLWGEPHQKRDDVSASGAYLHQTMIAENVTGLKNLFH 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   EG+I  TG  SG +           A      +
Sbjct: 120  LSSMASYEGQLGKWPRMDAELISE-HAEGIIATTGCPSGDVQTRLRLGQFDEALAAAARW 178

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++G D  ++ L  H    +R    Q++++     LP + TN+  ++ +     H+ ++
Sbjct: 179  QDIYGKDNFFLELMDHGLDIERRVRDQLLEIGKRLNLPPLVTNDCHYVLQSQSHDHEAML 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--ALENTVEIARRCSFILQVHAP 290
             V     +   DR +   D Y    +  +    D     A +NT+ IA R     ++  P
Sbjct: 239  CVQTGKTLQDPDRFKFGGDGYYIKTAAQMRDTWDNMVPGACDNTLWIAERVGDYSEIWEP 298

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +        +   + L ++ + GL+ R            Q+Y  R  +E+ VI  
Sbjct: 299  HTHDRMPIADVPEGETPTSWLTHEVMEGLKRRFPD-----SEVPQEYIDRAKYEIEVIDF 353

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I+ A+   I VGPGRGS AGS+ AYA+TIT+IDP+   LLFERFLNP
Sbjct: 354  KGYPSYFLIVAELIKHARSVGIRVGPGRGSAAGSLVAYAMTITNIDPMEHGLLFERFLNP 413

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468
            +R S PD DIDF   RR E+I Y   ++G +++AQ+ITFG+++ K AL+D  R    Q  
Sbjct: 414  ERPSAPDIDIDFDDRRRSEMITYAAERWGADKIAQVITFGTVKTKQALKDSARVQFGQPG 473

Query: 469  YSQVDRLCK-LIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLE 519
            Y   DR+ K L P      ++         +   +    R+    DP V ++ E ++ LE
Sbjct: 474  YQIADRVTKLLPPAIMGKDITLKGIVDPNDKRYNEAGEVRQLIETDPDVRKIFETARGLE 533

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R A  HA  +++   PL + +PM++  +    +T +     E  GL+K DFLGL+ L
Sbjct: 534  GVVRQAGVHACAVIMACVPLMEHIPMWKRAQDGAIITGWPYPACEAIGLLKMDFLGLRNL 593

Query: 580  TLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T+L  +L+ + + RG  V L  + +D  E Y LL    TLG+FQL+  GMR+ L  M+P 
Sbjct: 594  TVLNDALENIKENRGETVVLEDLTYDAPEVYDLLGRGDTLGVFQLDGGGMRELLRRMKPT 653

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQ 692
              +DI+A ++LYRPGP+     + Y +RKNGK+ I  IHP +   L+    +T G+I+YQ
Sbjct: 654  GFDDIVAALALYRPGPMGMNAHMDYADRKNGKKPIEPIHPELAEPLEEILHDTYGLIVYQ 713

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQ+M+I+Q ++ YS  EAD  R+AMGKK  E + KQ  +F  G   NG S+     ++  
Sbjct: 714  EQIMKISQKVANYSAGEADTFRKAMGKKKPEVLKKQYAKFSGGMKDNGYSQDAIDALWGT 773

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  FA Y FNKSHAA Y+V+SY TA+MKT Y  E++AA +T   DN +K   +  D R  
Sbjct: 774  IEPFASYAFNKSHAAGYSVVSYWTAYMKTFYTQEYMAALLTSVGDNKDKSAIYLADCRHL 833

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
             I+++PP VN    +F+   + + + L A++ VG      I++   +   F S  D+  +
Sbjct: 834  GIKVLPPDVNASLQNFQAVGDDVRFGLGAVRNVGADVVDSIVKTRKEKGDFTSFSDYLDK 893

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            +++   N+RV ESL+ AGA D  G+ R  L    ++        +K       ++FA   
Sbjct: 894  IETLPCNKRVTESLIKAGAFDSLGHPRKGLALIHEDAVDSVISTKKAADKGQFDLFAGLG 953

Query: 932  GTFSDKITLEKF-------SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            G  S                  +   +   E+ +LG Y SGHPLD Y+  L         
Sbjct: 954  GGDSAGGVEPSVFDVQVPDEEWDRKHKLALEREMLGLYVSGHPLDGYEAALAAQTDTELT 1013

Query: 985  ESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
              +      G  +++  ++ S  ++ +++ GS    VT  +      E   F
Sbjct: 1014 TILGGELKHGREVKIGGIISSVDRRVSKRDGSPWAIVTIEDHNGASVELLVF 1065


>gi|325133602|gb|EGC56263.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M13399]
 gi|325143829|gb|EGC66145.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M01-240013]
 gi|325206743|gb|ADZ02196.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M04-240196]
          Length = 1144

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/1038 (37%), Positives = 583/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+PI    + I                      +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPGQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A    +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSRDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L K
Sbjct: 406  FDVDFCQANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465

Query: 478  LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S  +A+  + + +E        D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLSLEKAMEAEPQIQELIEV-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  IDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    D +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L      + S +  
Sbjct: 884  IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDLPRWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++     +        +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLDRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQVEIMV 1014


>gi|38234155|ref|NP_939922.1| DNA polymerase III subunit alpha [Corynebacterium diphtheriae NCTC
            13129]
 gi|38200417|emb|CAE50105.1| DNA polymerase III alpha subunit [Corynebacterium diphtheriae]
          Length = 1186

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/1070 (29%), Positives = 522/1070 (48%), Gaps = 49/1070 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K  SFVHL  H+ YS+L+G   ++ + +++     PA+ +TD  N+F +  F +   A
Sbjct: 1    MAKKSSFVHLHNHTEYSMLDGMAKVDMLAEEVVRQGMPAVGMTDHGNMFGSDAFYRAMKA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG++PIIG +  +     L                 +         +L    EG   L  
Sbjct: 61   AGVKPIIGIEAYMAPGSRLHKERVRWGEPHQKSDDVSASGAYLHQTMLAENVEGLHNLFY 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E    G+I  TG  SG +           A +    +
Sbjct: 121  LSSMASYEGQLGKWPRMDAELIAE-HATGIIATTGCPSGDVQTRLRLGQFDQALEAAAMW 179

Query: 175  KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++G +  ++ L  H    +    S+++++    +LP + TN+  ++ E    AH+ ++
Sbjct: 180  QDIYGKENYFLELMDHGLEIENRVRSELLEIGRKLDLPPLVTNDCHYVLESQAPAHEAML 239

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAP 290
             V     +S  DR +     Y    +E +    D  +P+A +NT+ IA R     ++  P
Sbjct: 240  CVQTGKTLSDPDRFKFDGSGYYIKTAEQMRETWDSLVPQACDNTLWIAERVQDYGEIWEP 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +            + LR++   GL +R   GA+      Q+Y +R +FE++VI  
Sbjct: 300  HPHDRMPIADVPEGHTPTSWLRHEVHEGLRMRFNGGAV-----PQNYLERAEFEIDVIDM 354

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LLFERFLNP
Sbjct: 355  KGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHGLLFERFLNP 414

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R S PD DIDF   RR E+IRY   ++G +++AQ+ITFG+++ K AL+D  R       
Sbjct: 415  ERPSAPDIDIDFDDRRRGEMIRYAAQRWGEDKIAQVITFGTVKTKQALKDSARVQYGQEG 474

Query: 471  QVDR-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                           + K IP             +    R     DP V ++ + ++ LE
Sbjct: 475  YKMADRITKELPPAIMAKDIPLSGIMDPEHPRYGEAGEVRHLIETDPDVRKIYDTARGLE 534

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R A  HA  +++   PL + +PM++       +T +     E  GL+K DFLGL+ L
Sbjct: 535  GVVRQAGVHACAVIMASVPLLEHIPMWKRANDGALITGWPYPACEAIGLLKMDFLGLRNL 594

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++   L+ +   R  ++DL  +  DD   Y LL++  TLG+FQL+S GM++ L+ MQP 
Sbjct: 595  TVIGDCLENIKINRNEELDLEALQTDDPNVYKLLSSGDTLGVFQLDSGGMQELLKRMQPT 654

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQ 692
               DI+A ++LYRPGP+  +    Y +RKNG++ I  IHP ++      L+ET G+I+YQ
Sbjct: 655  GFNDIVASLALYRPGPMGVNAHWDYADRKNGRKPIEPIHPELEEPLKEILEETYGLIVYQ 714

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQ+M+I++ L+ Y+  EAD  R+AMGKK  E + K+ ++F  G   NG SK     ++  
Sbjct: 715  EQIMEISRKLANYTAGEADGFRKAMGKKKPEVLAKEYKKFSEGMFSNGYSKAAVDALWGT 774

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  FA Y FNKSHAA Y ++SY TA++K +Y  E++AA +T   D  +K   +  + R  
Sbjct: 775  IEPFASYAFNKSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVADKKDKSAIYLSNCRHL 834

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
            +I ++ P VN   ++F      I + L A++ VG      I++A  +   F    D+  +
Sbjct: 835  DISVLSPDVNESHLNFMPVGEDIRFGLGAVRNVGEDVVAAIIKAREEKGAFTDFSDYLDK 894

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            +D    N+RV ESL+ AGA D   + R  LL   ++        +K       ++FA   
Sbjct: 895  IDITACNKRVTESLIKAGAFDSMDHPRKGLLLIHEDAVDAVTSTKKAADKGQFDLFAGLG 954

Query: 932  GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
                +      + +   +  +   +   E+ +LG Y SGHPLD Y+  L           
Sbjct: 955  ADAEEVNNVFAVQIPD-AQWDKKHQLALEREMLGLYVSGHPLDGYEEALEAQTDTPLTTI 1013

Query: 987  V--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
            +      G  + +  ++    ++ ++K GS    VT  +    + +   F
Sbjct: 1014 LSGELRNGAEVTIGGIISGVDRRYSKKDGSPWAIVTVEDHHGAQVDLLVF 1063


>gi|325201527|gb|ADY96981.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M01-240149]
 gi|325207506|gb|ADZ02958.1| DNA polymerase III, alpha subunit [Neisseria meningitidis NZ-05/33]
          Length = 1144

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/1038 (37%), Positives = 585/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+PI    + I                      +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPGQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A    +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSRDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L K
Sbjct: 406  FDVDFCQANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465

Query: 478  LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+    A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  IDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    D +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++  +   +       +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQVEIMV 1014


>gi|254458525|ref|ZP_05071950.1| DNA polymerase III, alpha subunit [Campylobacterales bacterium GD 1]
 gi|207084833|gb|EDZ62120.1| DNA polymerase III, alpha subunit [Campylobacterales bacterium GD 1]
          Length = 1167

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1049 (34%), Positives = 573/1049 (54%), Gaps = 66/1049 (6%)

Query: 41   QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
              ++A+TD  N+F A++F  +  AA I+PIIG +  I   + L               I 
Sbjct: 1    MTSVAMTDHGNMFGAIDFYHQMKAADIKPIIGMEGYIHNGETL-----DDKSTKQRFHIC 55

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            L     +GY+ L+ L S+ ++ +      RI    L    +EGLI  +    G ++    
Sbjct: 56   LFAKNKKGYENLMYLSSKAFI-EGMYYFPRINKKELAA-HSEGLICTSACLQGEVNWHLN 113

Query: 161  FNS----------SQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHEL 209
              +           + A+   L +K++FGD  Y+ L RH   D+   ++++++++    +
Sbjct: 114  LANERNVRNGALGYEGAKAVALEYKEIFGDDFYLELMRHGIGDQLFIDNEILKISKETGI 173

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLP 268
             +VATN++ +    D + H+  M +  + +    +R R +  + YLK+  +M  +F+D+P
Sbjct: 174  KIVATNDTHYTYPGDAQYHEAFMCIGMNKLYDDPNRMRHSVHEFYLKSPEQMARLFADIP 233

Query: 269  EALENTVEIARRCSFILQVHAPILPRFIEKECD---------------DIQKEEENELRN 313
            EAL +T EI  +           +P   +   +                +  +   E + 
Sbjct: 234  EALAHTQEIVDKIEDFSITVKEPIPPNFKFTPEYAANDGLAINHEDDAPLSADASAEDKK 293

Query: 314  KAVAGLEVRLAQGA-------------IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            K  +G++   A+               I       +YR+RL+FE+N+I  MKF GY LIV
Sbjct: 294  KWFSGIDKNDAEYFTFCCKRGLDNRLKIVPQEKHDEYRERLEFEINIINSMKFPGYMLIV 353

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DF++ AK   I VGPGRGS AGS+ AY+L ITDIDP+++ LLFERFLNP+R+SMPD D+
Sbjct: 354  WDFVKVAKDRGIAVGPGRGSAAGSLVAYSLDITDIDPMKYDLLFERFLNPERVSMPDIDM 413

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF Q RR EVI YV  KYG  +VAQIITFGSL AK  +RDV R L MP SQ D++ KLIP
Sbjct: 414  DFMQARRGEVIDYVVEKYGRNQVAQIITFGSLLAKGVIRDVARVLDMPLSQADKMAKLIP 473

Query: 481  NDPAHPVSLQA---------IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            ++    ++ +             + + RE   +D +  R+ E ++KLEGL R++  HAAG
Sbjct: 474  DELGITLNGKTKNGEFIDGAFQKEPKLRELIDSDANSKRVWEFAKKLEGLKRNSGIHAAG 533

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI +  L    P+Y+       VTQ+++ ++E   LIKFDFLGLKTL ++  ++  + +
Sbjct: 534  VVISNEELWYKTPIYKPSGETTFVTQYSLNYLEDVDLIKFDFLGLKTLDVIDNAIKLVKR 593

Query: 592  RGVKVDLSLIPF-DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            R  K  +      +D + Y ++ T  T+G+FQ+ESSGM+   + ++PD  ED+IA+++LY
Sbjct: 594  RFDKDVIWNQIDENDPKVYEVIRTGETVGMFQIESSGMQDLNKRLKPDSFEDLIAVLALY 653

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+++ ++  +  RK+G+E I      ++ +L +T GVI+YQEQVMQI Q + G+SL 
Sbjct: 654  RPGPMESGMLDSFIERKHGRETIEYTFDTMETILGKTYGVIVYQEQVMQIVQTIGGFSLG 713

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             +D++RRAMGK  K++M      F  GA K G     A  +F+L+ KFA YGFNKSH+AA
Sbjct: 714  YSDIIRRAMGK--KKDMSVFNHEFSDGAQKQGYDYDKASKLFDLIEKFAGYGFNKSHSAA 771

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++++QTAW+KT+YP EF+AA +T + DN EK+ ++  + R+  I++ PP VN   ++F
Sbjct: 772  YAMVTFQTAWLKTYYPNEFMAALLTSDKDNTEKVVRYIDEVRRMGIELAPPDVNDSYLEF 831

Query: 829  KV----GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLE 883
                    + I + L AIKGVG      I++    D  F S+E+F +R+D  K+N+R +E
Sbjct: 832  SAITKDEKDIILFGLGAIKGVGGAAVESIIQTREEDGEFTSIENFVNRIDPSKVNKRFVE 891

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            S + +G  D FGYSR  LL  ++ I   A+     R N   ++F  ++   + K++L+  
Sbjct: 892  SSIKSGGFDRFGYSRKALLDQIELIVDTAKDASTARKNAVGSLFGDDEEITTVKLSLKNS 951

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                     E E+  LGFY SGHPLD Y+  L ++      E      G        V  
Sbjct: 952  DEYELKEILEFEKDTLGFYVSGHPLDEYRDKLDELNYSLSSELEGIKDGTFAIFIGKVEE 1011

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             Q+K ++KG++ G V+  +     E   F
Sbjct: 1012 IQKKVSKKGNQFGIVSLMDFHGNIEIMLF 1040


>gi|332108545|gb|EGJ09769.1| DNA polymerase III, alpha subunit [Rubrivivax benzoatilyticus JA2]
          Length = 1169

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1047 (39%), Positives = 581/1047 (55%), Gaps = 43/1047 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ H+ YS+++G L +++      AD QPA+AITD +NLF A++F +    AG++PI
Sbjct: 3    FVHLRTHTEYSVVDGTLRIDDAAGAAKADGQPALAITDLSNLFGAIKFYKACRGAGVKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + +D                    + LLV    GY  L EL++R +  +  +    
Sbjct: 63   VGVDVWMDP--------LPDAAERQPTRLALLVQDRGGYLNLCELLARAWTKNVQRNQAW 114

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   WL E+ + GLI L+G   G + +A      Q A         +F  R Y+ LQR  
Sbjct: 115  VKWEWLHEL-SGGLIALSGADMGAVGQALLAGDEQRAAAAARELASIFPGRFYLELQRAG 173

Query: 191  GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248
                       V LA    LP+VAT+   FL  +D+EAH+  + +A    ++   R  R 
Sbjct: 174  LPTHEAHVRAAVPLAARLGLPVVATHPIQFLEPDDFEAHEARVCIAEGETLANPKRIKRF 233

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + + K  ++M S+F+D+P A+ NTVEIARRCS  L +  P LP F   +   I    +
Sbjct: 234  TREQHFKTAAQMESLFADVPSAIANTVEIARRCSLTLVLGKPRLPDFPTPDGSPI----D 289

Query: 309  NELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               R  +  GLE RL         +     +Y +RL+FEL+ I +M F GYFLIV+DFI 
Sbjct: 290  VYFRKASHEGLEKRLVALFPKEEEREKRRPEYVERLEFELDTILKMGFPGYFLIVSDFIV 349

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N  PVGPGRGSGAGS+ AYAL ITD+DPL++ LLFERFLNP+R+SMPDFDIDFCQ 
Sbjct: 350  WAKANGCPVGPGRGSGAGSLVAYALFITDLDPLQYKLLFERFLNPERVSMPDFDIDFCQG 409

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VIRYV+ KYG + V QI TFG++ AKAALRDVGR L M Y  VD + KLIP  P  
Sbjct: 410  NRDRVIRYVKEKYGRDAVGQIATFGTMAAKAALRDVGRVLGMGYGHVDSIAKLIPAPPGK 469

Query: 486  PVS------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
             V+            + A  ++        A+  V  LL ++ ++EG+ R+   HA G++
Sbjct: 470  TVTLAKVPEKPDPGIIYARQEEPEIDRREAAEEEVAELLSLATRVEGMVRNIGMHAGGVL 529

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL---QKSLDFLA 590
            I    ++   P+Y+   SD  V+Q++   +E  GL+KFDFLGL TLT+L   ++ +    
Sbjct: 530  IAPGKITDFCPLYQQPGSDSAVSQYDKDDVEAIGLVKFDFLGLATLTILELARQFIVARR 589

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                      +P DD   Y L +   T  +FQ ES GM+  L   +P  +ED+IAL +LY
Sbjct: 590  PNMKDFSYETLPLDDQRVYKLFSDGLTEAVFQFESRGMQGMLREAKPSRLEDLIALNALY 649

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+D I  +  RK+GKE +   HPL++ +L ET GV++YQEQVMQ AQ+L GYSL  A
Sbjct: 650  RPGPMDLIPTFVARKHGKETVEYPHPLLETVLGETYGVMVYQEQVMQTAQVLGGYSLGGA 709

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKK  EEM + +  F  GA+K  I +  A  +F+L+ KFA YGFNKSHAAAY+
Sbjct: 710  DLLRRAMGKKKPEEMAQHRVIFREGAAKKDIPEAKADEVFDLMEKFAGYGFNKSHAAAYS 769

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK- 829
            +++Y TAW+K H   EF AA+MT+E DN +K+K    DA+ F I+  PP VNT  + F+ 
Sbjct: 770  LLAYHTAWIKVHCTAEFFAANMTIEADNTDKLKVLLADAKLFGIRFDPPDVNTGTLRFEP 829

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASAD------KPFDSLEDFCSRVDSKKLNRRVLE 883
            + D RI Y L A+KG G      I+ A          PF SL DFC+RVD +++N+RV+E
Sbjct: 830  IEDKRIRYGLGAVKGTGAGAIEAIVAAREGRAGDGGGPFRSLFDFCARVDRQRVNKRVVE 889

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            +L+ AGA D     R   L S+    ++A     N+       F    G+ + +  L   
Sbjct: 890  ALIKAGAFDSLHADRAATLASVGLAFEWADTQAANKDQGGLFDFGDAHGSSTQEPALVAV 949

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
               +   R   E+  +GFY SGH  D  +  +RK   +   E V +    ++  A +V  
Sbjct: 950  EPWSVRERLMQEKIAIGFYLSGHLFDACRDEVRKFVRRDIVELVDSREPQSV--AGIVSE 1007

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +    ++G R+      + ++  EA 
Sbjct: 1008 LRVINGQRG-RVAIFKLDDGSEAIEAV 1033


>gi|296436078|gb|ADH18252.1| DNA polymerase III subunit alpha [Chlamydia trachomatis G/9768]
 gi|296437006|gb|ADH19176.1| DNA polymerase III subunit alpha [Chlamydia trachomatis G/11222]
 gi|296437939|gb|ADH20100.1| DNA polymerase III subunit alpha [Chlamydia trachomatis G/11074]
 gi|297140439|gb|ADH97197.1| DNA polymerase III subunit alpha [Chlamydia trachomatis G/9301]
          Length = 1237

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1074 (34%), Positives = 572/1074 (53%), Gaps = 60/1074 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L  HS YS+L+   S+   + K    Q PA+A+TD  NLF A+EF +      I+PII
Sbjct: 4    IPLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKPII 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+L +          + K+       ++LL    EGY+ L  L S  Y  +      RI
Sbjct: 64   GCELYVAPSSRFDKKKERKSRVAN--HLILLCKDEEGYRNLCLLSSLAYT-EGFYYVPRI 120

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L +  ++GLI L+   SG + +A    S +  EK LL ++ LF +  +  +Q H+ 
Sbjct: 121  DRDLLSQ-HSKGLICLSACLSGSVAQAALE-SEEDLEKDLLWYQDLFQEDFFSEVQLHKS 178

Query: 192  YDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             +                            V+  +    +P VATN+  +L+ +D+ AH+
Sbjct: 179  SEEKVALFEEAWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWLAHE 238

Query: 230  VLM----------AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            +L+          A  ++ + + K +   + + Y K+  E+  +F+  PE + NT  +A 
Sbjct: 239  ILLNVQSREPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEIAELFAAHPETITNTCIVAE 298

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQ---GAI 328
            RC   L       P ++ +         E E        L      GL  +      G I
Sbjct: 299  RCHLELDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELLGHI 358

Query: 329  AKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            AK +  +D     ++RL  E ++I       Y LIV D I WAK + IPVGPGRGSGAGS
Sbjct: 359  AKKFPGEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGAGS 418

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            V  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + VA
Sbjct: 419  VMLFLLGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKDNVA 478

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            QIITFG+++AK A++DVGR L  P ++V+ + K IP+  A   S   +  D   R+  + 
Sbjct: 479  QIITFGTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITSA--LEADPELRQLYVD 536

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++MK +E
Sbjct: 537  DAEAAEVIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKPVE 596

Query: 565  KAGLIKFDFLGLKTLTLLQ-KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              G++K DFLGLKTLT +   +     + G+ +  + IP DD  T+ LL    T+GIFQ+
Sbjct: 597  SVGMLKVDFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGIFQM 656

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES GM+   + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++P+LK
Sbjct: 657  ESRGMQDLAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPILK 716

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S A+ NGI  
Sbjct: 717  ETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANGIDP 776

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
            +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ 
Sbjct: 777  SIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEKVG 836

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862
            K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E    + P+
Sbjct: 837  KLIQEAHSMNILVLPPDINESGQDFEATQEGIRFSLGAVKGVGMSIVDSIVEEREKNGPY 896

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             SL+DF  R D KK+ ++ LE+LV AG  D F  ++   L  L+++       +K     
Sbjct: 897  KSLQDFVQRADFKKVTKKQLENLVDAGTFDRFEPNKDLALAILNDLYDTFSREKKEAATG 956

Query: 923  HENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                F+ +          ++ E     +     + E+ +LG Y + HP+D  + +L  + 
Sbjct: 957  VLTFFSLDSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLPFLS 1016

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFF 1032
            +    +      G  IR   ++     K  + +  +   +  S+    YE   +
Sbjct: 1017 VVPARDFEGLPHGTIIRTVFLIDKVTTKISSAEQKKFALLQVSDEVDSYELPIW 1070


>gi|261378286|ref|ZP_05982859.1| DNA polymerase III, alpha subunit [Neisseria cinerea ATCC 14685]
 gi|269145377|gb|EEZ71795.1| DNA polymerase III, alpha subunit [Neisseria cinerea ATCC 14685]
          Length = 1144

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1038 (38%), Positives = 583/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+PI    + I                      +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M   FSDLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPSQFFIPPETMAERFSDLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A+   +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSLDDYLVKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++  D+L K
Sbjct: 406  FDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSK 465

Query: 478  LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+    A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  VDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYCFTPYPNMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESIITARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VRLVDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++              +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQIEIMV 1014


>gi|330994074|ref|ZP_08318004.1| DNA polymerase III subunit alpha [Gluconacetobacter sp. SXCC-1]
 gi|329759020|gb|EGG75534.1| DNA polymerase III subunit alpha [Gluconacetobacter sp. SXCC-1]
          Length = 1144

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 478/1040 (45%), Positives = 663/1040 (63%), Gaps = 28/1040 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FVHL+VHS+YSL +GA+ +  ++      + PA+AITDT N+F ALEFSQ    
Sbjct: 1    MSHA-DFVHLRVHSAYSLSQGAIRVPELVALAHDMRMPAVAITDTGNMFGALEFSQYCGK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPIIGCQL         + ++   P      +VLL   AEG   L  L S  +L   
Sbjct: 60   KGVQPIIGCQL--------GLPSRSDKPGMPAEHVVLLARNAEGLANLQFLSSAGFLQT- 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  + L  L E    GL +LTGGS GP+         + A + +      +G  + V
Sbjct: 111  VTDEPTVTLDLLCER-AGGLFLLTGGSRGPLFHMLAEGQEREATRFMERLHAAYGRYMAV 169

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L RH    +R  E  ++ +A    LPLVATN   F   + YEAHD L+ +A    ++++
Sbjct: 170  ELHRHGQAAERAVEPGMIAMADRMGLPLVATNECFFPKPDMYEAHDALLCIAQGRTMAER 229

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR RVTP+H+ K    M  +F+DLPEA +NT+EIAR C+  ++   P+LP   + +    
Sbjct: 230  DRWRVTPEHWFKPAEAMRELFADLPEACDNTLEIARLCAIKVETCKPLLPMCPKVQP--- 286

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             K E+  LRN A  GL  RL++  +      + Y +RL FEL++IA M F GYF+IVADF
Sbjct: 287  GKTEDETLRNMARTGLARRLSRMDVD-EETRRKYEERLAFELDIIANMGFPGYFMIVADF 345

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK+++IPVGPGRGSGAGS+ A+ALTITDIDP+ F+LLFERFLNP+R+SMPDFDIDFC
Sbjct: 346  IQWAKEHDIPVGPGRGSGAGSLAAWALTITDIDPIPFNLLFERFLNPERVSMPDFDIDFC 405

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            QDRRDEVIRYV+N+YG +RVAQIITFG LQA+AA+RDVGR L +P+  V+R+ +LIPN+P
Sbjct: 406  QDRRDEVIRYVRNEYGADRVAQIITFGKLQARAAVRDVGRVLGLPFGMVNRVAELIPNNP 465

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A PV+  QAI  + R +E R  D ++ RLLEI Q+LEGL+RHASTHAAG+VIGDR L +L
Sbjct: 466  AQPVTLKQAIEGEPRLQEMRDEDEAIRRLLEIGQQLEGLFRHASTHAAGVVIGDRELVEL 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD +SD+ VTQ+NMK++E+AGL+KFDFLGL TLT+LQ+++ FL   GV VDLS +P
Sbjct: 526  VPLYRDPKSDMLVTQYNMKFVEQAGLVKFDFLGLTTLTILQRAVQFLHGMGVAVDLSALP 585

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  TY +L    T G+FQ E +GMR  L+ M+P  +ED+IA V+LYRPGP+ NI  Y 
Sbjct: 586  LDDPLTYEMLARGDTGGVFQFEGAGMRDVLKQMRPTRLEDLIAAVALYRPGPMANIPDYC 645

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G E     H  I  +L+ET G+++YQEQVMQIAQ ++GYSL  AD+LRRAMGKKI+
Sbjct: 646  RRKHG-EAWEPPHEEIRDILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIR 704

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            EEMD+Q+E F  GA K GI +  A  +F+L+AKFADYGFNKSHAAAYA++SYQTAWMK +
Sbjct: 705  EEMDRQREIFTEGAMKRGIEREKAAEVFDLMAKFADYGFNKSHAAAYALVSYQTAWMKAN 764

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRIY 836
            +PV F+AA M+L  +  +K+    Q+A +  I ++PP +N    DF V          I 
Sbjct: 765  HPVAFIAACMSLAREKTDKLAGLRQEADRLGIPLLPPDINASGADFTVEKLPDGGGYAIR 824

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            Y+LAA+K VG    + ++    D+PF  LED  +R+D +++N+  LE+L  AGA D    
Sbjct: 825  YALAAVKKVGLGAMQSLVAVRGDRPFVDLEDLAARLDPRQVNKMQLENLARAGAFDTILP 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL--EKFSVENSSVRFEN 954
            +R +   + + + + AQ   +   +    +F       + +  L   + +      R   
Sbjct: 885  NRARACGAAETVMRRAQANAQQAASGQIGLFGGGGDGPAAREPLRMPRVADWPEFERLNM 944

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN--NIRLAAMVVSKQQKKTRKG 1012
            E   +GF+ +GHPLD Y P++R++G        A  +     +++A  VV ++++ TR G
Sbjct: 945  EADAIGFHLTGHPLDSYGPLMRRLGAVRATGLEAAAQAGIVRVKIAGCVVDRKERPTRTG 1004

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            +++ WV  S+ +   E  FF
Sbjct: 1005 NKMAWVRLSDASGGCEITFF 1024


>gi|241759501|ref|ZP_04757605.1| DNA polymerase III, alpha subunit [Neisseria flavescens SK114]
 gi|241320283|gb|EER56616.1| DNA polymerase III, alpha subunit [Neisseria flavescens SK114]
          Length = 1144

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1038 (37%), Positives = 582/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+PI    + I                      +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPIGAVDVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F +  Y
Sbjct: 110  RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPNAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A+   +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSLDDYLVKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L K
Sbjct: 406  FDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465

Query: 478  LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+    A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  VDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VQLIDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++              +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQIEIMV 1014


>gi|226953025|ref|ZP_03823489.1| DNA polymerase III, alpha chain [Acinetobacter sp. ATCC 27244]
 gi|226836232|gb|EEH68615.1| DNA polymerase III, alpha chain [Acinetobacter sp. ATCC 27244]
          Length = 1187

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1035 (36%), Positives = 576/1035 (55%), Gaps = 39/1035 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ +S+ E  + + +++     D+ PA+A+TD +NL +A++F +     GI+PI
Sbjct: 3    FVHLGIHTEFSITESIVRIPDLVKAAINDEMPALALTDLSNLHAAVKFYEACLKKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + ++  ++                  LL  +  G++ L E+VSR ++  Q      
Sbjct: 63   LGSVIRLNDAEH---------------RATLLAMSNTGWRNLTEIVSRGFIEGQQLSIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E  +E LI+L G     + +    ++ Q AE  L  + + FG+R+Y+ L R  
Sbjct: 108  VQKEWVLE-QSEDLIILLG-QHSDVGKMLCSSNPQKAEPLLEAWIEKFGNRVYLALTRTE 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     + V+LA  +++ +VA N+  F+ ++D+ AH+  + +A   V+    RP+  
Sbjct: 166  RAGEEDFIQEAVKLAAKYQIGVVAHNDIHFIEKDDFYAHEARVCIADGYVLGDDKRPKNY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ Y K   +M  +FSD+P A+ENT  +A+RC+  LQ+    LP F   +   I    E
Sbjct: 226  SPEQYFKTGQQMSELFSDIPSAIENTYYVAQRCNVALQLGTYFLPDFPIPDGYTIDTYFE 285

Query: 309  NELRNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +  R      L       +         + Y +R+ +E+++I +M F GYFLIV DFIQW
Sbjct: 286  HLSRQGLEERLNHLYPISERDEDWEDIRKPYDERIKYEVDIILKMGFPGYFLIVMDFIQW 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DFC   
Sbjct: 346  AKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAG 405

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD VI YV   YG + V+QI TFG++ AK A+RDV R L   Y   DR+ K++P  P   
Sbjct: 406  RDRVIEYVAQNYGRQAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLGV 465

Query: 487  VSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                AI  + + ++      + D      + E++ KLEG+ R+   HA G+VI    ++ 
Sbjct: 466  DLATAIDMEPQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIAPGKITD 525

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD---L 598
               +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +R        +
Sbjct: 526  YSAVLCDPDGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIKSETPLEI 585

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP+D I
Sbjct: 586  ANVPLDDKDAYLVFAEANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMDLI 645

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   +    +   +HPL++ +L+ T G+++YQEQVMQ AQ  +GY+L  AD+LRRAMG
Sbjct: 646  PDFI-HRMHGGEFEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMG 704

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM KQ++ FI GA++  I +  A +IF+ + KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 705  KKKPEEMVKQRQIFIKGAAEKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAW 764

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYY 837
            +K HYP EF+AA ++ EM N + I     D R   ++++PPSVN     F   D R I Y
Sbjct: 765  LKAHYPSEFMAAVLSSEMQNTDSIVFLIDDCRNNKLEVLPPSVNMSLYHFHASDERTIVY 824

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L AIKGVG    + ++++   + P+  L DFC R+D KK+N+R LE+L+ AGALDC G 
Sbjct: 825  GLGAIKGVGEQAMQSVIDSRIKEGPYKDLFDFCHRIDLKKINKRTLEALIRAGALDCLGI 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R  L+  L    + A+    NR     ++F   +     +   +     +  VR + E+
Sbjct: 885  ERSSLMAQLPEAVQAAEQARSNRETGIMDLFGEVEEV--QRKPAKPVKPWSDEVRLKGEK 942

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              LG Y +GHP+DVY+  L+        E   T RG     A +VV       R      
Sbjct: 943  DTLGLYLTGHPIDVYRQELKAFIPAKLNELTPTRRGVTTVFAGLVVDIANFPNR-----I 997

Query: 1017 WVTFSEPAKEYEANF 1031
             +T  +     E + 
Sbjct: 998  MITLDDGTARVEISC 1012


>gi|229496705|ref|ZP_04390419.1| DNA polymerase III, alpha subunit family [Porphyromonas endodontalis
            ATCC 35406]
 gi|229316602|gb|EEN82521.1| DNA polymerase III, alpha subunit family [Porphyromonas endodontalis
            ATCC 35406]
          Length = 1251

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/1123 (30%), Positives = 560/1123 (49%), Gaps = 112/1123 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            FVHL VHS +S+L+G  S++ ++ K   D  P IA+TD   +F    F  +         
Sbjct: 4    FVHLHVHSQFSILDGQASVSALVKKAIGDGMPGIALTDHGVMFGIKTFFDECNKVNSKHR 63

Query: 67   -----------------------------------------IQPIIGCQLDIDMQDNLKM 85
                                                      +PI GC+     +     
Sbjct: 64   SRISALKKEIKELQKKESPTPEDKEEIEKLEQEISEVERQMFKPIFGCEAYCARRTRFDK 123

Query: 86   T-------NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
                    N  ++   +   ++LL    +GY  L ++VS  +  +      RI    L++
Sbjct: 124  DKDVPDPYNPSRSIDRSGWHLILLAKNKQGYLNLCKMVSASFT-EGEYYRPRIDKDLLEQ 182

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR---- 194
               EG+I+++    G + +       + AE+ +  FK +FG+  Y+ +Q H+  D     
Sbjct: 183  YH-EGVIVMSACLGGEVPQHILGGHPERAEETVRWFKNIFGEDYYLEVQLHQTDDPNANR 241

Query: 195  -------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                        +  +A    + +VATN+  F+++ED  AHD+L+ +     +    R R
Sbjct: 242  ETFVQQLAVNEVIYDIAERTGVKVVATNDVHFVNQEDATAHDMLICLGTKRDLDDPQRMR 301

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   +LK + EM ++F+D PE L NT+EI  +  F    +  ++P F   E  D   + 
Sbjct: 302  YSQQEWLKTQEEMNAVFADRPELLSNTLEILNKVEFYTIENPALMPDFPLPEGFD---DA 358

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L++    G ++R            ++ ++R+DFELN I  M F GYFLIV D IQ A
Sbjct: 359  DKYLQHLTYEGAKMRYGDP------IPEEVKERIDFELNTIKSMGFPGYFLIVQDLIQAA 412

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   + VGPGRGS AGS  AY L IT++DPL++ LLFERFLNPDR+S+PD DIDF    R
Sbjct: 413  RDMGVCVGPGRGSAAGSAVAYCLKITNLDPLKYGLLFERFLNPDRISLPDIDIDFDDSGR 472

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +++++   KYGH+ VAQIITFG ++AK+++ DV R   +P  +  R+ KLIP+  +   
Sbjct: 473  AKILQWATEKYGHKNVAQIITFGEMKAKSSIADVARLKHIPVEESRRITKLIPDKFSDSD 532

Query: 488  SLQAIAD------------------DSRFREA-RLADPSVDRLLEISQKLEGLYRHASTH 528
                                         ++    ++  +    + +QKLEG  R+   H
Sbjct: 533  MELIHKTPGYENAKGNVTIELSTLVVPELKKLQVGSNTQIQDTFKYAQKLEGSIRNIGVH 592

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            A G++IG   +S ++P+      +   + +TQ+  K IE  GLIK DFLGLKTL+++++ 
Sbjct: 593  ACGVIIGKYDISDVIPISTSFDENGEKVLITQYEGKVIESTGLIKMDFLGLKTLSIIREG 652

Query: 586  LDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            L+ +  R    +D+  IP DD +T+ L      +GIFQ ES+GM++ L  +QPD  E +I
Sbjct: 653  LENVKHRFHKDIDIDHIPLDDEKTFKLFCEGRMVGIFQFESAGMQKYLRELQPDRFELLI 712

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            A+ +LYRPGP+  I  Y  R++G+E+I+   P    +L+ET GV +YQEQVM +++ L+ 
Sbjct: 713  AMNALYRPGPMKYIPQYIARRHGREEIIYDVPETKEILEETFGVTVYQEQVMLLSRSLAN 772

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            ++  ++D LR+AMGKK  EEM+K K  F+ G  +NG SK +   I+     FA Y FNKS
Sbjct: 773  FTRGQSDSLRKAMGKKKIEEMEKLKADFLKGGVENGHSKEVLEKIWMDWEDFAKYAFNKS 832

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAA Y+ ++YQTA++K HYP EF+A +++  + N  +I K  ++ +   I+++ P VN  
Sbjct: 833  HAACYSWLAYQTAYLKAHYPSEFMAGNLSCNLSNAPEIAKLMKECKAMGIRLLSPDVNES 892

Query: 825  CVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVL 882
               F V  +  I + L+ IKGV  TT   ++E    + PF S+ DF +R+  + +NR+ +
Sbjct: 893  MQKFSVNSNGDIRFGLSGIKGVNQTTIDKLIEDREQNGPFTSIYDFVARIPRQFINRKTM 952

Query: 883  ESLVFAGALDCFGYSRMQLLQ---------SLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            E+   +GA D FG  R               +  +  Y + V++  +++   +F   +  
Sbjct: 953  EAFALSGAFDSFGIERESFFAPPVNSREDSFIATLLAYGRIVQEESSSQSMGLFGESEEL 1012

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK----GYEESVAT 989
               +  + +    N+  +   E  ++G Y S +PL+ Y+ IL K+         ++ +  
Sbjct: 1013 SIPEPEVPQAEPWNNLTKLSKEYELVGIYISSNPLEPYRLILDKLCTVKLDDLDKKDLEE 1072

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   +  A +V +  +  T+     G  T  + +  +E   F
Sbjct: 1073 FKDTRMVFAGLVTNVMEGLTKTNKPYGRFTLEDLSGSHEFALF 1115


>gi|260555310|ref|ZP_05827531.1| DNA polymerase subunit III alpha [Acinetobacter baumannii ATCC 19606]
 gi|193077117|gb|ABO11893.2| DNA polymerase III alpha chain [Acinetobacter baumannii ATCC 17978]
 gi|260411852|gb|EEX05149.1| DNA polymerase subunit III alpha [Acinetobacter baumannii ATCC 19606]
          Length = 1187

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1039 (36%), Positives = 581/1039 (55%), Gaps = 47/1039 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + +++     D+ PA+A+TD +NL +A++F       GI+PI
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVKTAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + ++                      LL  +  G++ L E+VSR ++  Q      
Sbjct: 63   LGSTIRLN---------------DAQHRATLLAMSDIGWKGLTEIVSRGFIEGQQLSIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E   + +I+L G     + +    ++ Q AE  L  + + FG+R+Y+ L R  
Sbjct: 108  VQKEWVLEQHQD-IIVLLG-QHSDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTRTD 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     +  +LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   RPR  
Sbjct: 166  RPGEEDFIQEAAKLAAKYNIGVVAHNDVHFIEKEDFEAHEARVCIADGYVLADDRRPRLY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ Y K   EM+ +FSD+P A+ENT +IA+RC+  L++    LP +   +   I    +
Sbjct: 226  SPEQYFKTSDEMIELFSDIPSAIENTYQIAKRCNVTLKLGTYFLPEYPIPDGFTI----D 281

Query: 309  NELRNKAVAGLEV------RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE        + +         + Y +R+D+E+ +I +M F GYFLIV D
Sbjct: 282  TYFEHLSKEGLEERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ K++P  
Sbjct: 402  CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537
            P       AI  + + ++      + D      + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGVDLATAIEMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPG 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596
             ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +      
Sbjct: 522  KITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSND 581

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              ++S +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  PLNISHVPLDDPKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +   +    +   +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L  AD+LR
Sbjct: 642  MDLIPDFI-HRMHGGEFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ F+ GA + GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TAW+K HYP EF+AA M+ EM N + +     D R   ++++PPSVN     F   D++
Sbjct: 761  HTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYHFHASDDK 820

Query: 835  -IYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L AIKGVG    + +++      P+  L DFC R+D KK+N+R LE+L+ AGALD
Sbjct: 821  TIVYGLGAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A+    NR +   ++F   +     +   +     +  VR 
Sbjct: 881  CLGIERSSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+          
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNEITATRRGVTTVYAGLVLDVANFP---- 994

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
            +R+  V   +     E + 
Sbjct: 995  NRVVIV-LDDGTARIEVSC 1012


>gi|255065760|ref|ZP_05317615.1| DNA polymerase III, alpha subunit [Neisseria sicca ATCC 29256]
 gi|255050078|gb|EET45542.1| DNA polymerase III, alpha subunit [Neisseria sicca ATCC 29256]
          Length = 1144

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1038 (37%), Positives = 584/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+P+    + I                      +L++    GY RL EL++  Y+  +
Sbjct: 60   AGIKPVGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKE 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNIHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A    +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSLDDYLVKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P++  D+L K
Sbjct: 406  FDVDFCQSNRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSK 465

Query: 478  LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+    A+  + + +E        D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLGLDDAMKAEPQIQELIEV-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  VDVGKIPLDDQAAYKIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VQLIDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++              +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQIEIMV 1014


>gi|312109934|ref|YP_003988250.1| DNA polymerase III subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|311215035|gb|ADP73639.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y4.1MC1]
          Length = 1104

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1026 (38%), Positives = 593/1026 (57%), Gaps = 41/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL V S YSLL     +N+++ K    Q PA+A+TD N L+ A+ F  +    GIQP
Sbjct: 2    SFVHLHVRSCYSLLTSPAKINDLVKKAKDLQFPALALTDENVLYGAIPFYIECKRNGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG   DI ++                  +VLL     GYQ L+++ S +    +     
Sbjct: 62   IIGMITDIVLEG------------EEAYPLVLLAKNETGYQHLMKISSTIQTKTREG--- 106

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL    + GLI LT G SG I+          A++ L  +K++FG+  Y+++QR 
Sbjct: 107  -IPEKWLWHYRS-GLIALTPGKSGQIETLLAHGEIIKAKQVLERYKQIFGENFYLSVQRG 164

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                    E Q++ L      PLVATN+  ++ +ED   H  L+AV   T    +     
Sbjct: 165  ENKRKEPYEQQLIALGEETNTPLVATNDVQYIEKEDAFVHRCLLAVKQGT--VIETETAA 222

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + YL    EM   FSDLP A+EN+ +IA +C   ++  +  LP++        ++  +
Sbjct: 223  AGERYLTPPEEMTERFSDLPAAVENSGKIAEQCHLDIEFGSLKLPKYPVP----TKESAD 278

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR   + GL  R+          +  YR+RL++EL+VI +M FS YFLIV DF+ +A+
Sbjct: 279  DYLRRLCMEGLHERVP-------SPSDRYRERLEYELSVIRQMGFSDYFLIVWDFMNFAR 331

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            K  I  GPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDF  DRR+
Sbjct: 332  KQGIVTGPGRGSAAGSLVAYTLYITNVDPIQYGLLFERFLNPERVSMPDIDIDFPDDRRE 391

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YV NKYG + VAQIITFG+  AKAALRD+G+ LQ+   ++  + K +PN     + 
Sbjct: 392  EVIQYVANKYGQQYVAQIITFGTFGAKAALRDIGKVLQIDAKEMASILKHVPNKHGITI- 450

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A    + FR+A  +   + R +  + K+EGL RH STHAAG++I   PLSQ+VP+ + 
Sbjct: 451  QEAYDQSAAFRQAVQSSALIKRWVATAMKVEGLPRHTSTHAAGVIISSEPLSQIVPLQQG 510

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
               +L +TQ+ M  +E+ GL+K DFLGL+TLTLL+     + Q+    +D+  IP  D +
Sbjct: 511  -HGELYLTQYPMDVLERLGLLKMDFLGLRTLTLLEHICRLIRQQTGETIDVREIPLHDRK 569

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY L++   T GIFQLES GM++ L+ ++P   EDI+A+ +LYRPGPID I  Y  RK+G
Sbjct: 570  TYELVSEGDTNGIFQLESDGMKRVLKQLKPSQFEDIVAVNALYRPGPIDYIPSYIRRKHG 629

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +EK   +HP + P+L  T GV+IYQEQ+MQIA  ++G+SL +AD+LRRA+ KK KE +D+
Sbjct: 630  EEKAAYLHPDLAPILAPTYGVLIYQEQIMQIAAKIAGFSLGKADLLRRAVAKKKKEILDQ 689

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+  FI G  + G  ++ A ++++++ +FADYGFN+SHA AY+++SYQ A++K HYP+ F
Sbjct: 690  QRNAFIKGCMEKGYDESFANDLYDMIVRFADYGFNRSHAVAYSMLSYQLAYLKAHYPLYF 749

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
             AA +T  + + EK+  +  +ARQ  I+++PPSVN     F V   +I YSLAA+K VG 
Sbjct: 750  YAALLTSVIGDEEKVALYVYEARQKRIELLPPSVNQSRYSFSVEQGKIRYSLAAVKHVGA 809

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               + I++     PF    DFC R+  K +NR+ +ESLV +G  D FG  R  LL S+D 
Sbjct: 810  AAVKAIVQERKKGPFSDFFDFCVRLFGKGINRKTIESLVLSGCFDEFGVERAALLASIDV 869

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              ++AQ V         +         S K    +    +   +  +E+ +LG Y S HP
Sbjct: 870  ALEHAQLVGPYVEEGMFS-------DISLKPKYVEAPAFSLEEKLMHEKELLGVYVSPHP 922

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
               ++ + R  G +     +       ++    +  +++ +T+KG  + ++T S+ + E 
Sbjct: 923  TSAHRKMFRLAGARPVMSIIREKADRLVKAGVYIAQERKTRTKKGEEMSFLTISDESGEM 982

Query: 1028 EANFFP 1033
            +A  FP
Sbjct: 983  DAVAFP 988


>gi|218767589|ref|YP_002342101.1| putative DNA polymerase III, alpha subunit [Neisseria meningitidis
            Z2491]
 gi|14194676|sp|Q9JVX8|DPO3A_NEIMA RecName: Full=DNA polymerase III subunit alpha
 gi|121051597|emb|CAM07897.1| putative DNA polymerase III, alpha subunit [Neisseria meningitidis
            Z2491]
          Length = 1144

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/1038 (38%), Positives = 585/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+PI    + I   D                  +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPIGAADVRIGNPD----------APDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M   FSDLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPSQFFIPPETMAERFSDLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A    +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSLDDYLVKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++  D+L K
Sbjct: 406  FDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSK 465

Query: 478  LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+    A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  VDVGTIPLDDQTAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    D +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESITSARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++  +   +       +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQVEIMV 1014


>gi|295399508|ref|ZP_06809490.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
            C56-YS93]
 gi|294978974|gb|EFG54570.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
            C56-YS93]
          Length = 1104

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1026 (38%), Positives = 593/1026 (57%), Gaps = 41/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL V S YSLL     +++++ K    Q PA+A+TD N L+ A+ F  +    GIQP
Sbjct: 2    SFVHLHVRSCYSLLTSPAKISDLVKKAKDLQFPALALTDENVLYGAIPFYIECKRNGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG   DI ++                  +VLL     GYQ L+++ S +    +     
Sbjct: 62   IIGMITDIVLEG------------EEAYPLVLLAKNETGYQHLMKISSTIQTKTREG--- 106

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   WL    + GLI LT G SG I+          A++ L  +K++FG+  Y+++QR 
Sbjct: 107  -IPEKWLWHYRS-GLIALTPGKSGQIETLLAHGEIIKAKQVLERYKQIFGENFYLSVQRG 164

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                    E Q++ L      PLVATN+  ++ +ED   H  L+AV   T    +     
Sbjct: 165  ENKRKEPYEQQLIALGEETNTPLVATNDVQYIEKEDAFVHRCLLAVKQGT--VIETETAA 222

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + YL    EM   FSDLP A+EN+ +IA +C   ++  +  LP++        ++  +
Sbjct: 223  AGERYLTPPEEMTERFSDLPAAVENSGKIAEQCHLDIEFGSLKLPKYPVP----TKESAD 278

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR   + GL  R+          +  YR+RL++EL+VI +M FS YFLIV DF+ +A+
Sbjct: 279  DYLRRLCMEGLHERVP-------SPSDRYRERLEYELSVIRQMGFSDYFLIVWDFMNFAR 331

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            K  I  GPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDF  DRR+
Sbjct: 332  KQGIVTGPGRGSAAGSLVAYTLYITNVDPIQYGLLFERFLNPERVSMPDIDIDFPDDRRE 391

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YV NKYG + VAQIITFG+  AKAALRD+G+ LQ+   ++  + K +PN     + 
Sbjct: 392  EVIQYVANKYGQQYVAQIITFGTFGAKAALRDIGKVLQIDAKEMASILKHVPNKHGITI- 450

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A    + FR+A  +   + R +  + K+EGL RH STHAAG++I   PLSQ+VP+ + 
Sbjct: 451  QEAYDQSAAFRQAVQSSALIKRWVATAMKVEGLPRHTSTHAAGVIISSEPLSQIVPLQQG 510

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
               +L +TQ+ M  +E+ GL+K DFLGL+TLTLL+     + Q+    +D+  IP  D +
Sbjct: 511  -HGELYLTQYPMDVLERLGLLKMDFLGLRTLTLLEHICRLIRQQTGEMIDVREIPLHDRK 569

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY L++   T GIFQLES GM++ L+ ++P   EDI+A+ +LYRPGPID I  Y  RK+G
Sbjct: 570  TYELVSEGDTNGIFQLESDGMKRVLKQLKPSQFEDIVAVNALYRPGPIDYIPSYIRRKHG 629

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +EK   +HP + P+L  T GV+IYQEQ+MQIA  ++G+SL +AD+LRRA+ KK KE +D+
Sbjct: 630  EEKAAYLHPDLAPILAPTYGVLIYQEQIMQIAAKIAGFSLGKADLLRRAVAKKKKEILDQ 689

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+  FI G  + G  ++ A ++++++ +FADYGFN+SHA AY+++SYQ A++K HYP+ F
Sbjct: 690  QRNAFIKGCMEKGYDESFANDLYDMIVRFADYGFNRSHAVAYSMLSYQLAYLKAHYPLYF 749

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
             AA +T  + + EK+  +  +ARQ  I+++PPSVN     F V   +I YSLAA+K VG 
Sbjct: 750  YAALLTSVIGDEEKVALYVYEARQKRIELLPPSVNQSRYSFSVEQGKIRYSLAAVKHVGA 809

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               + I++     PF    DFC R+  K +NR+ +ESLV +G  D FG  R  LL S+D 
Sbjct: 810  AAVKAIVQERKKGPFSDFFDFCVRLFGKGINRKTIESLVLSGCFDEFGVERAALLASIDV 869

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              ++AQ V         +         S K    +    +   +  +E+ +LG Y S HP
Sbjct: 870  ALEHAQLVGPYVEEGMFS-------DISLKPKYVEAPAFSLEEKLMHEKELLGVYVSPHP 922

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
               ++ + R  G +     +       ++    +  +++ +T+KG  + ++T S+ + E 
Sbjct: 923  TSAHRKMFRLAGARPVMSIIREKADRLVKAGVYIAQERKTRTKKGEEMSFLTISDESGEM 982

Query: 1028 EANFFP 1033
            +A  FP
Sbjct: 983  DAVAFP 988


>gi|169633232|ref|YP_001706968.1| DNA polymerase III, alpha chain [Acinetobacter baumannii SDF]
 gi|169152024|emb|CAP00899.1| DNA polymerase III, alpha chain [Acinetobacter baumannii]
          Length = 1187

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1039 (36%), Positives = 582/1039 (56%), Gaps = 47/1039 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + +++     D+ PA+A+TD +NL +A++F       GI+PI
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVKTAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + ++                      LL  +  G++ L E+VSR ++  Q      
Sbjct: 63   LGSTIRLN---------------DAQHRATLLAMSDIGWKGLTEIVSRGFIEGQQLSIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E   + +I+L G     + +    ++ Q AE  L  + + FG+R+Y+ L R  
Sbjct: 108  VQKEWVLEQHQD-IIVLLG-QHSDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTRTD 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     +  +LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   RPR  
Sbjct: 166  RPGEEDFIQEAAKLAAKYNIGVVAHNDVHFIEKEDFEAHEARVCIADGYVLADDRRPRLY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ Y K   EM+ +FSD+P A+ENT +IA+RC+  L++    LP +   +   I    +
Sbjct: 226  SPEQYFKTSDEMIELFSDIPSAIENTYQIAKRCNVTLKLGTYFLPEYPIPDGFTI----D 281

Query: 309  NELRNKAVAGLEV------RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GL+        + +         + Y +R+D+E+ +I +M F GYFLIV D
Sbjct: 282  TYFEHLSKEGLKERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ K++P  
Sbjct: 402  CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537
            P       AI  + + ++      + D      + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGVDLATAIEMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPG 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GV 594
             ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +      
Sbjct: 522  KITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNSDSND 581

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +++S +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  PLNISHVPLDDPKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +   +    +   +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L  AD+LR
Sbjct: 642  MDLIPDFI-HRMHGGEFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ F+ GA + GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TAW+K HYP EF+AA M+ EM N + +     D R   ++++PPSVN     F   D++
Sbjct: 761  HTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYHFHASDDK 820

Query: 835  -IYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L AIKGVG    + +++      P+  L DFC R+D KK+N+R LE+L+ AGALD
Sbjct: 821  TIVYGLGAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A+    NR +   ++F   +     +   +     +  VR 
Sbjct: 881  CLGIERSSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+          
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNEITATRRGVTTVYAGLVLDVANFP---- 994

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
            +R+  V   +     E + 
Sbjct: 995  NRVVIV-LDDGTARIEVSC 1012


>gi|239504052|ref|ZP_04663362.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB900]
          Length = 1187

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1039 (36%), Positives = 580/1039 (55%), Gaps = 47/1039 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + +++     D+ PA+A+TD +NL +A++F       GI+PI
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVKTAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + ++                      LL  +  G++ L E+VSR ++  Q      
Sbjct: 63   LGSTIRLN---------------DAQHRATLLAMSDIGWKGLTEIVSRGFIEGQQLSIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E   + +I+L G     + +    ++ Q AE  L  + + FG+R+Y+ L R  
Sbjct: 108  VQKEWVLEQHQD-IIVLLG-QHSDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTRTD 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     +  +LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   RPR  
Sbjct: 166  RPGEEDFIQEAAKLAAKYNIGVVAHNDVHFIEKEDFEAHEARVCIADGYVLADDRRPRLY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ Y K   EM+ +FSD+P A+ENT +IA+RC+  L++    LP +   +   I    +
Sbjct: 226  SPEQYFKTSDEMIELFSDIPSAIENTYQIAKRCNVTLKLGTYFLPEYPIPDGFTI----D 281

Query: 309  NELRNKAVAGLEV------RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE        + +         + Y +R+D+E+ +I +M F GYFLIV D
Sbjct: 282  TYFEHLSKEGLEERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ K++P  
Sbjct: 402  CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537
            P       AI  + + ++      + D      + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGVDLATAIEMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPG 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596
             ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +      
Sbjct: 522  KITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSND 581

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              ++S +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  PLNISHVPLDDPKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +   +    +   +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L  AD+LR
Sbjct: 642  MDLIPDFI-HRMHGGEFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ F+ GA + GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TAW+K HYP EF+AA M+ EM N + +     D R   + ++PPSVN     F   D++
Sbjct: 761  HTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLDVLPPSVNMSTYHFHASDDK 820

Query: 835  -IYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L AIKGVG    + +++      P+  L DFC R+D KK+N+R LE+L+ AGALD
Sbjct: 821  TIVYGLGAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A+    NR +   ++F   +     +   +     +  VR 
Sbjct: 881  CLGIERSSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+          
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNEITATRRGVTTVYAGLVLDVANFP---- 994

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
            +R+  V   +     E + 
Sbjct: 995  NRVVIV-LDDGTARIEVSC 1012


>gi|169796248|ref|YP_001714041.1| DNA polymerase III, alpha chain [Acinetobacter baumannii AYE]
 gi|184157823|ref|YP_001846162.1| DNA polymerase III subunit alpha [Acinetobacter baumannii ACICU]
 gi|213157018|ref|YP_002319063.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB0057]
 gi|215483703|ref|YP_002325924.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB307-0294]
 gi|294838019|ref|ZP_06782702.1| DNA polymerase III DnaE [Acinetobacter sp. 6013113]
 gi|294843569|ref|ZP_06788252.1| DNA polymerase III DnaE [Acinetobacter sp. 6014059]
 gi|294859019|ref|ZP_06796788.1| DNA polymerase III DnaE [Acinetobacter sp. 6013150]
 gi|301347827|ref|ZP_07228568.1| DNA polymerase III DnaE [Acinetobacter baumannii AB056]
 gi|301511111|ref|ZP_07236348.1| DNA polymerase III DnaE [Acinetobacter baumannii AB058]
 gi|301595112|ref|ZP_07240120.1| DNA polymerase III DnaE [Acinetobacter baumannii AB059]
 gi|169149175|emb|CAM87054.1| DNA polymerase III, alpha chain [Acinetobacter baumannii AYE]
 gi|183209417|gb|ACC56815.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii ACICU]
 gi|213056178|gb|ACJ41080.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB0057]
 gi|213988216|gb|ACJ58515.1| DNA polymerase III subunit alpha [Acinetobacter baumannii AB307-0294]
 gi|322508138|gb|ADX03592.1| DNA polymerase III, alpha chain [Acinetobacter baumannii 1656-2]
 gi|323517712|gb|ADX92093.1| DNA polymerase III, alpha subunit [Acinetobacter baumannii
            TCDC-AB0715]
          Length = 1187

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1039 (36%), Positives = 581/1039 (55%), Gaps = 47/1039 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + +++     D+ PA+A+TD +NL +A++F       GI+PI
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVKTAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + ++                      LL  +  G++ L E+VSR ++  Q      
Sbjct: 63   LGSTIRLN---------------DAQHRATLLAMSDIGWKGLTEIVSRGFIEGQQLSIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E   + +I+L G     + +    ++ Q AE  L  + + FG+R+Y+ L R  
Sbjct: 108  VQKEWVLEQHQD-IIVLLG-QHSDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTRTD 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     +  +LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   RPR  
Sbjct: 166  RPGEEDFIQEAAKLAAKYNVGVVAHNDVHFIEKEDFEAHEARVCIADGYVLADDRRPRLY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ Y K   EM+ +FSD+P A+ENT +IA+RC+  L++    LP +   +   I    +
Sbjct: 226  SPEQYFKTSDEMIELFSDIPSAIENTYQIAKRCNVTLKLGTYFLPEYPIPDGFTI----D 281

Query: 309  NELRNKAVAGLEV------RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE        + +         + Y +R+D+E+ +I +M F GYFLIV D
Sbjct: 282  TYFEHLSKEGLEERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ K++P  
Sbjct: 402  CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537
            P       AI  + + ++      + D      + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGVDLATAIEMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPG 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596
             ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +      
Sbjct: 522  KITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSND 581

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              ++S +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  PLNISHVPLDDPKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +   +    +   +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L  AD+LR
Sbjct: 642  MDLIPDFI-HRMHGGEFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ F+ GA + GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TAW+K HYP EF+AA M+ EM N + +     D R   ++++PPSVN     F   D++
Sbjct: 761  HTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYHFHASDDK 820

Query: 835  -IYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L AIKGVG    + +++      P+  L DFC R+D KK+N+R LE+L+ AGALD
Sbjct: 821  TIVYGLGAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A+    NR +   ++F   +     +   +     +  VR 
Sbjct: 881  CLGIERSSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+          
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRQELKAFIPAKLNEITATRRGVTTVYAGLVLDVANFP---- 994

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
            +R+  V   +     E + 
Sbjct: 995  NRVVIV-LDDGTARIEVSC 1012


>gi|162452023|ref|YP_001614390.1| DNA polymerase III, alpha subunit [Sorangium cellulosum 'So ce 56']
 gi|161162605|emb|CAN93910.1| DNA polymerase III, alpha subunit [Sorangium cellulosum 'So ce 56']
          Length = 1212

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1076 (37%), Positives = 595/1076 (55%), Gaps = 61/1076 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL VHS YSLL+G+L + ++  +  +    A+A+TD  N+F A++  +     GI  I
Sbjct: 5    FIHLHVHSQYSLLDGSLRVKDLAARAKSLGMRAVALTDHGNMFGAIQHYKACKDQGIGAI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVP--SIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IGC++++            ++     P   +VLL ++ EGY+ L+ +VS+ ++      +
Sbjct: 65   IGCEVNVARSWGTAAGQVSRSGVDETPVDHLVLLAASEEGYKNLVRIVSQGHVDPASGLA 124

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQ 187
              + L  + +    GLI LTG   G + +           + L   +  F    LYV LQ
Sbjct: 125  PSVRLDTVAQ-HNAGLIGLTGCMGGVVAQRILEQGEGEGREALSRLRDCFQPGSLYVELQ 183

Query: 188  RHRGYDRYRESQVVQLAY-THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-R 245
             H   ++   + ++  A     LPLVATN++ F + ED E    L  +A +   ++    
Sbjct: 184  DHGLVEQSVLNGILARAAGDLGLPLVATNDAHFGAREDGEGQLYLSCIAANRTFAEASAA 243

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF-ILQVHAPILPRFIEKECDDIQ 304
               + + +LK   EM+ +F D P+A+ +T+EIA RCS   L++  P+LP F         
Sbjct: 244  HHGSFEMFLKPADEMMHLFRDHPQAVRSTLEIAERCSTLKLKLGKPMLPTFPLPSGF--- 300

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQD-YRQRLDFELNVIARMKFSGYFLIVADF 363
             +  +  R+ A  GL  RLAQ A       +  YR RLD ELNVI +M F GYFLIV DF
Sbjct: 301  ADSASYFRHVAHDGLTKRLAQIAQTGRKVDEATYRARLDVELNVIVQMDFPGYFLIVWDF 360

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I++AK + IPVGPGRGSGAGS+ AYA+ ITD+DPL ++LLFERFLNP+R+SMPDFD+DFC
Sbjct: 361  IKYAKDHGIPVGPGRGSGAGSLVAYAMEITDLDPLPYNLLFERFLNPERVSMPDFDVDFC 420

Query: 424  QDRRDEVIRYVQNKYGHE----RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
             DRRDEVI YV  KY  E     V QI TF  L+A++ ++DV RA+  P ++  ++  LI
Sbjct: 421  MDRRDEVISYVTKKYSKEADKPSVGQIATFHELKARSVIKDVARAMAFPANEAQKIASLI 480

Query: 480  PNDPA--HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            P           +A+  + + +  + +DP+V  LL+ +QKLEGL RHA  HAAG+VI + 
Sbjct: 481  PQKSPGIMYTIPEALEIEPKLKALKESDPTVAELLKQAQKLEGLTRHAGMHAAGVVISEG 540

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV--- 594
            PL   VP +++   +  VTQ+     E AGL+KFDFLGLKTLT++  ++  +  R     
Sbjct: 541  PLWDHVPCFKN--GEQLVTQYYKDDAELAGLVKFDFLGLKTLTVIDIAVRLVNARPDLAA 598

Query: 595  ----KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                + D++ +P DD  TY LL +  T G+FQLESSGM+Q  + ++PD  EDI+A V+LY
Sbjct: 599  KEGKRFDVNTVPLDDTATYALLQSGETTGVFQLESSGMQQLFKDLKPDAFEDIVAAVALY 658

Query: 651  RPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+   +   + + K+G++ I  +HPL+D +L+ T GVI+YQEQVMQIAQ L+GY+L 
Sbjct: 659  RPGPLGTGMVKDFVDCKHGRKPIEKMHPLVDELLQPTYGVIVYQEQVMQIAQKLAGYTLG 718

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQK  F+ G+ KNG+    A  IF LL  FA YGFNKSH+AA
Sbjct: 719  GADLLRRAMGKKKPEEMAKQKATFVDGSLKNGVKAEDAERIFGLLEYFAGYGFNKSHSAA 778

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+++YQTA++K HYPVEFL A MT + D +EK+ +   + R + ++I+PP +N    DF
Sbjct: 779  YALLTYQTAYLKAHYPVEFLCALMTADRDKIEKVVRIIAEGRAWGVEILPPEINESKTDF 838

Query: 829  KVG--------------------------DNRIYYSLAAIKGVGTTTARHIMEAS-ADKP 861
             V                           D +I + + AI+GVG +    I+EA  A   
Sbjct: 839  TVVYSAKPATNGKRVAGTRRGGSRVRDPYDPKIRFGMGAIRGVGESALEAILEARDAGGV 898

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CF---GYSRMQLLQSLDNIQKYAQWVEK 917
            F  L DF  RVD +++N+ V E+LV  GA D      G SR +    +D   + ++   K
Sbjct: 899  FADLFDFAERVDPRRVNKGVFEALVQCGAFDASLHARGISRARAFAGIDRALERSRSASK 958

Query: 918  NRTNKHENIFAHEKGTFSDKI-TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
             R +    +FA        ++         +       E++ LGFY SGHPLD Y   L 
Sbjct: 959  ERNSAQIGLFAAVASKSEVRLDDYPTAEDWDLRETLSREKQSLGFYVSGHPLDRYGVDLN 1018

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEANF 1031
            +  +              +R+  MV   +++  +  G +I +    +     E   
Sbjct: 1019 RFDVTAVSALAGMDAWARVRVGGMVEGYRERIFKGGGGKIAFFVLEDTTGRVEVKV 1074


>gi|88802679|ref|ZP_01118206.1| putative DNA polymerase III alpha subunit [Polaribacter irgensii
            23-P]
 gi|88781537|gb|EAR12715.1| putative DNA polymerase III alpha subunit [Polaribacter irgensii
            23-P]
          Length = 1445

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/1071 (32%), Positives = 550/1071 (51%), Gaps = 64/1071 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            F HL  H+ YS+L+  + +  I+   A D  PA+A+TDT N+ +A  F            
Sbjct: 260  FSHLHNHTQYSVLQSTMEIGQIVKAAADDNMPAVAMTDTANMMAAFHFVSAILNHNKTAK 319

Query: 67   --IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              ++PI+GC+ ++         ++ K+       +VLL     GY  L ++ S  + +D 
Sbjct: 320  TPMKPIVGCEFNVCGD------HKNKSQKDNGFQVVLLAKNKRGYHNLAKMSSIAF-VDG 372

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    +++   E +I+LTG   G +         + AE+ L+ +K+ F D LY+
Sbjct: 373  FYYVPRIDREIIKKY-KEDIIVLTGNLYGEVPSKILNLGEKQAEEALIWWKEEFKDDLYI 431

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L RH   D       ++  +  H + ++ATNN+ +L ++D  AHD+L+ V      +  
Sbjct: 432  ELMRHDQQDEKIVNETLLTFSKKHNIKVIATNNTFYLEKKDANAHDILLCVKEGEKQATP 491

Query: 244  -------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI--------LQVH 288
                          ++Y K+  EM ++F+DLPEA+ N  EI  +                
Sbjct: 492  IGKGRGYRYGLPNQEYYFKSSEEMKTLFADLPEAISNIQEIVDKIEIYTLARDVLLPAFD 551

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             P   + I  E D  ++ E N L++    G E          G      ++RLDFEL+VI
Sbjct: 552  IPDEFKDIADESDKGKRGENNFLKHLTFVGAEK-------RYGDITASIKERLDFELSVI 604

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +  + GYFLIV DFI+ A+  ++ VGPGRGS AGSV AY L IT+IDP+++ LLFERFL
Sbjct: 605  EKTGYPGYFLIVEDFIREARNMDVAVGPGRGSAAGSVVAYCLWITNIDPIKYDLLFERFL 664

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF  + R  V+ YV NKYG  +VAQIIT+G++ AK+++RD  R L +P
Sbjct: 665  NPERVSMPDIDIDFDDEGRGRVMDYVINKYGANQVAQIITYGTMAAKSSIRDTARVLDLP 724

Query: 469  YSQVDRLCKLIP---------NDPAHPVSLQAIADDS-----RFREARLADPSVDRLLEI 514
              + DR+ KLIP         +DP     +  +  +        R     +  V   +  
Sbjct: 725  LFEADRIAKLIPLIKLKNIFGDDPKSKGKVAGLRSEEKQLVEELRSMSFGNDLVSETINK 784

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            +  LEG  R+   HA G++I    ++  VP+     SD+ VTQF+   +E AGL+K DFL
Sbjct: 785  ATMLEGSVRNTGIHACGVIITPGDITNYVPVALAKDSDMYVTQFDNSVVESAGLLKMDFL 844

Query: 575  GLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GLKTLTL++ ++  +  R     D    P DD +TY L     T+GIFQ ES GM++ + 
Sbjct: 845  GLKTLTLIKDTVKIVKARHNVDLDPDSFPLDDVKTYELFQRGETVGIFQYESPGMQKHMR 904

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
             ++P    D+IA+ +LYRPGP++ I  + NRK+G E I    P ++  L ET G+ +YQE
Sbjct: 905  SLKPTVFADLIAMNALYRPGPMEYIPSFINRKHGTEDIAYDLPAMEEYLAETYGITVYQE 964

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVM ++Q L+ ++  EADVLR+AMGKK    ++K K +F+  AS+ G        I++  
Sbjct: 965  QVMLLSQKLADFTKGEADVLRKAMGKKQIAVLNKMKPKFLEQASEKGHDAEKLEKIWKDW 1024

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNKSH+  YA I+YQTA++K HYP E++A+ ++  M++++ +  F ++ ++  
Sbjct: 1025 EAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMASVLSNNMNDIKSVSFFMEECKRME 1084

Query: 814  IQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
            + +  P +N   + F V D   + + +AA+KGVG    R I++   +   + S+ D   R
Sbjct: 1085 LPVFGPDLNESFLKFSVNDEGAVRFGMAAVKGVGAGAVRAIIKEREEHGNYTSIFDLAKR 1144

Query: 872  VDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQWVEKNRTNKH 923
            VD +  N++  +SLV AGA D F    R Q   +       L+   KY    ++N  +  
Sbjct: 1145 VDLRAANKKSFDSLVKAGAFDSFEDTHRAQYFHTDEKGLTFLERAMKYGSKYQENENSAQ 1204

Query: 924  ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR--KMGIK 981
             ++F         +  + +     +      E+ V+G Y S HPLD +K  L+     +K
Sbjct: 1205 VSMFGEASSVQFPEPDIPECDTWGTMELLSQEKEVIGIYISAHPLDDFKNELKFCNASLK 1264

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++  ++     N+  A ++   Q + ++ G      T  +     E   F
Sbjct: 1265 YFKADLSKFINLNMAFAGIITDVQHRVSKAGKGWAMFTAEDYGDSNEFRIF 1315


>gi|294674564|ref|YP_003575180.1| DNA polymerase III subunit alpha [Prevotella ruminicola 23]
 gi|294473595|gb|ADE82984.1| DNA polymerase III, alpha subunit [Prevotella ruminicola 23]
          Length = 1243

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1119 (32%), Positives = 543/1119 (48%), Gaps = 109/1119 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62
             FVHL VH+ YS+L+G  S+  ++DK   D    +AITD  ++F   EF           
Sbjct: 3    DFVHLHVHTYYSILDGQSSIKKLVDKAIGDGMKGMAITDHGDMFGIKEFHDICNGVNKQR 62

Query: 63   CAAGI---QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
               G+   +PI GC++ +  + ++ +             +++L     GY+ LI+LVS  
Sbjct: 63   KKDGLEPFKPIFGCEMYVARRGDMMLKE--GKEDLGGYHLIVLAKNEHGYKNLIKLVSNS 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            + +D      R     L++   E LI+ +   +G +         + A K +   K L+G
Sbjct: 121  W-VDGFYNRPRTDHKQLEKYH-EDLIVCSACIAGEVPAKILKGDIEGARKAIEWHKNLWG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     +++LA  + + LV TN+S F+ +E+ E
Sbjct: 179  DDYYLELQRHEVTDPNIRANRETFPLQQQANKVLIELAKEYGVKLVCTNDSHFVDKENAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ +A    +    R   +   + K + EM  IFSD+PEAL NTVEI  +      
Sbjct: 239  AHDHLLCLATGKDLDDPTRMLYSKQEWFKTQQEMNDIFSDVPEALANTVEILNKVETYSL 298

Query: 287  VHAPILPRFIEKECDDIQKE---------------------------------------- 306
               PI+P F   E    ++E                                        
Sbjct: 299  DADPIMPFFPIPESFGTEEEWRQKFTEQQLFEEFTTDENGENPLDPEAAEKKIKKLGGYD 358

Query: 307  -------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   E + L   A  G E R            +D  +R+ FEL+++  M F GYFLI
Sbjct: 359  KIYRIKFEADYLAKLAYEGAERRYGNP------IPKDVEERVKFELHIMKTMGFPGYFLI 412

Query: 360  VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V DFI  A+    + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+S+PD 
Sbjct: 413  VQDFINSARDELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRISLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R +V+++V +KYGHE  A IIT+ S+  K +++DV R   +P +  + LCK 
Sbjct: 473  DTDFDDDGRGKVLKWVMDKYGHENCAHIITYASMATKNSIKDVARVENVPLAISNALCKA 532

Query: 479  IPND----PAHPVSLQ---AIADDSRFREARL-ADPSVDRLLEISQKLEGLYRHASTHAA 530
            IP+           +    AI      +EA    DP +   ++ ++ LEG  R    HA 
Sbjct: 533  IPDRLPEVDGKTPKMNLTNAIKAVPELQEAEASTDPHIANTMKYAKMLEGTVRGTGIHAC 592

Query: 531  GIVIGDRPLSQLVPMYRDVRSDL-----PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            G +I   P+S  VP+      D        TQ++   IE  GLIK DFLGLKTL+ L+++
Sbjct: 593  GFIICRDPISDHVPVSTADDPDFKGTKTNCTQYDGHVIESTGLIKMDFLGLKTLSELKEA 652

Query: 586  LDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
               + + RG+ VDL  IP DD +TY L     T+G FQ ES GM++ L  + P   ED+I
Sbjct: 653  CANIKRTRGIDVDLDTIPIDDPKTYELYQQGRTVGTFQFESQGMQKYLRELHPTVFEDLI 712

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            A+ +LYRPGP+D I  +  RKNG+E I      ++  LK+T G+ +YQEQVM +++ L+ 
Sbjct: 713  AMNALYRPGPMDYIPSFIARKNGREPITYDIDCMEKYLKDTYGITVYQEQVMLLSRQLAD 772

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            ++  E+D LR+AMGKK K+ +D  K +FI G  KNG    +   I+    KFA Y FNKS
Sbjct: 773  FTRGESDALRKAMGKKKKDIVDAMKPKFIEGGKKNGHDPKVLEKIWADWEKFASYAFNKS 832

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAA Y+ ++YQTA++K +YP E++AA M+   D + +I K   + +Q  I  + P VN  
Sbjct: 833  HAACYSWVAYQTAYLKANYPAEYMAAIMSRRRDQITEITKLMDECKQMGIATLGPDVNES 892

Query: 825  CVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVL 882
               F V     I + L AIKG+G + A  I++    + P+  + DF  RV+   +NR+  
Sbjct: 893  YEKFGVNHHGEIRFGLGAIKGMGDSAALSIIDEREKNGPYKDIYDFAQRVNFSAVNRKAF 952

Query: 883  ESLVFAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            ESL  +G  D FG  R             ++ + +Y Q  ++ +     ++F        
Sbjct: 953  ESLALSGGFDSFGIRREDYFAKNPKGETFIEMLCRYGQLYQQEQAEMKNSLFGMFGEGVE 1012

Query: 936  DKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA---TI 990
                    +    +   R   E+ ++G Y S HPLD YK IL  +      E        
Sbjct: 1013 IAQPQPPKNDIRWSDIERLNKERELVGIYLSAHPLDEYKIILDNLCNTKCTELADIAKLA 1072

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
               ++ L  +V +++   T+ G   G VT  +     E 
Sbjct: 1073 DREDVILGGIVTAQKTGFTKTGKPYGVVTIEDFDGSGEI 1111


>gi|240167939|ref|ZP_04746598.1| DNA polymerase III subunit alpha [Mycobacterium kansasii ATCC 12478]
          Length = 1183

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/1065 (31%), Positives = 523/1065 (49%), Gaps = 44/1065 (4%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              S SFVHL  H+ YS+L+GA  +N +L ++   Q PAI +TD  N+F A EF   A  A
Sbjct: 4    SSSRSFVHLHNHTEYSMLDGAAKINPMLAEVERLQMPAIGMTDHGNMFGASEFYNSATQA 63

Query: 66   GIQPIIGCQLDIDMQDNLK----------MTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            GI+PIIG +  I                       +   +   + ++   A G + L +L
Sbjct: 64   GIKPIIGVEAYIAPASRFDTRRIFWGDPSQKADDISGSGSYTHLTMMAENATGLRNLFKL 123

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S      Q  +  R+    + E   EG+I+ TG  SG +         + A +    ++
Sbjct: 124  SSLASFEGQLSKWSRMDAELIAE-HAEGIIITTGCPSGEVQTRLRLGQEREALEAAARWR 182

Query: 176  KLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            ++ G +  ++ L  H    +R     ++ +  T  +P +ATN+  +++ +    H+ L+ 
Sbjct: 183  EIVGPENYFLELMDHGLTIERRVREGLLHIGRTLNIPPLATNDCHYVTRDAAHNHEALLC 242

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            V     +S  +R +   D Y    +  +    D          +                
Sbjct: 243  VQTGKTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPR 302

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
              +         +  + LR++  AGL  R   G  A       Y  R D+E++VI    F
Sbjct: 303  DRMPVFPVPDGHDPASWLRHEVAAGLRRRFPDGPPAS------YVTRADYEIDVICAKGF 356

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              YFLIVAD I +AK   I VGPGRGS AGS+ AYAL ITDIDP+   LLFERFLNP+R 
Sbjct: 357  PSYFLIVADLIGYAKSVGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERT 416

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQ 471
            SMPD DIDF   RR E++RY  +K+GH+RVAQ+ITFG+++ KAAL+D  R    Q  ++ 
Sbjct: 417  SMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAI 476

Query: 472  VDRLCKL-IPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
             DR+ K   P   A  +          +   + +  R     DP V  + + +  LEGL 
Sbjct: 477  ADRITKALPPAIMAKDIPLSGITDPAHERYKEAAEVRGLIETDPDVRTIYQTALGLEGLI 536

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R+A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+ LT++
Sbjct: 537  RNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTII 596

Query: 583  QKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              ++D +   +G+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQP   E
Sbjct: 597  GDAIDNIKANKGIDLDLESVPLDDKPTYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFE 656

Query: 642  DIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQV 695
            DI+A+++LYRPGP+       Y +RKNG++ I  IHP +   L+    ET G+I+YQEQ+
Sbjct: 657  DIVAVLALYRPGPMGQNAHNDYADRKNGRQAIKPIHPELAEPLEEILAETYGLIVYQEQI 716

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M+IAQ ++GYSL+ AD+LR+AMGKK +E +DK+ E F  G   NG S      +++ +  
Sbjct: 717  MRIAQKVAGYSLARADILRKAMGKKKREVLDKEYEGFAQGMQANGFSSGAIKALWDTILP 776

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FADY FNKSHAA Y ++SY TA++K +YP E++A  +T   D+ +K   +  D R+  I 
Sbjct: 777  FADYAFNKSHAAGYGLVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGIT 836

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874
            ++PP VN   ++F      I Y L A++ VG      +++  +D   F    D+ +++D 
Sbjct: 837  VLPPDVNESGLNFASVGEDIRYGLGAVRNVGANVVGSLIQTRSDKGKFTDFSDYLNKIDI 896

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
               N++V ESL+ AGA D  G++R  L     +        +K       ++F       
Sbjct: 897  SACNKKVTESLIKAGAFDSLGHARKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGSDDGT 956

Query: 935  SDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--A 988
                 +              +   E+ +LG Y SGHPL+    +L           +   
Sbjct: 957  GAADPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAGQVDTAIPAILDGD 1016

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  +R+  ++ S  ++  + G         +     E  FFP
Sbjct: 1017 VPNDTQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1061


>gi|302531855|ref|ZP_07284197.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4]
 gi|302440750|gb|EFL12566.1| DNA polymerase III subunit alpha [Streptomyces sp. AA4]
          Length = 1190

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/1074 (31%), Positives = 539/1074 (50%), Gaps = 57/1074 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SFVHL VH+ YS+L+GA  +  +L +     QPAIA+TD   + +A EF + A  + +
Sbjct: 2    SDSFVHLHVHTEYSMLDGAAKVKPLLAEAERLGQPAIAMTDHGTMSAAAEFYRVAKNSPV 61

Query: 68   QPIIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVLLVSTAEGYQ 110
            +PIIG +  +  +                           +   +   + +    A+G +
Sbjct: 62   KPIIGIEAYVAPESRFHKKPVFWGQASQRGSDEFGEGGDVSGSGSYTHMTMWAENADGLR 121

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L+++ S     +   +  R+    + E    G++  TG  SG +         + A + 
Sbjct: 122  NLLKMSSLASF-EGYYRKPRMDRDLIAENHR-GIMATTGCPSGEVQTRLRLGQREQAIQA 179

Query: 171  LLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
               +K +FG D  ++ L  H    +R     ++++    +L  VATN+S +++++  EAH
Sbjct: 180  ASDYKDIFGADNFFLELMDHGLPIERSVREGLLEIGKLLDLKPVATNDSHYVTQDQAEAH 239

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              L+ V     +S   R +   D Y    +E +  + D          +           
Sbjct: 240  SALLCVQAGKTLSDPTRFKFDGDGYYLKSAEAMREYWDKEVPGAAQNTLLIAERVQSYAD 299

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                   + +      K E++ LR +    +  R   G        Q+Y+ R+D EL ++
Sbjct: 300  VFDFHDRMPRFPVPEGKTEDDLLREEVEKFVPTRFPDG------PTQEYKDRIDRELGIM 353

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
            A+M FS YFL+V D ++WAK+  I VGPGRGS  GS+ AY L ITD+DP+  SLLFERFL
Sbjct: 354  AKMGFSAYFLVVGDLVRWAKEQRIRVGPGRGSATGSLVAYILHITDLDPIEHSLLFERFL 413

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--Q 466
            NP+R+S PD D+DF   RR EV++Y  +K+G E VAQ+ITFG+++ KAA++D  R    Q
Sbjct: 414  NPERVSPPDIDLDFDDRRRGEVLQYTIDKWGAENVAQVITFGTIKTKAAIKDAARVHFGQ 473

Query: 467  MPYSQVDRLCKLIPNDPA---------HPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
              +S  D++ K +P   A              +   + S  R     DP V ++++ ++ 
Sbjct: 474  PGFSIADKITKALPPPIAAQDIPLSGIFDPKHERYGEASEVRTLTETDPEVKQIMDTARG 533

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R+A  HA  +++   PL  ++P++R       +T F+    E  GL+K DFLGL 
Sbjct: 534  LEGLIRNAGVHACAVILSSEPLLDVIPLWRRD-DGATITGFDYPSCEDMGLLKMDFLGLS 592

Query: 578  TLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            TLT+++ ++  +    G ++DL+ +  DD +TY LL+   TLG+FQL+ + MR  L  M 
Sbjct: 593  TLTIIEDTIQAVKDNHGREIDLATLALDDKKTYELLSRGDTLGVFQLDGAAMRSLLRAMA 652

Query: 637  PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVII 690
            P    DI A+++LYRPGP+  +  + Y  R NG++KI  IHP     ++P+L ET  +++
Sbjct: 653  PTHFGDIAAVLALYRPGPMAANAHIDYAERSNGRQKISPIHPELKDALEPILGETYHLLV 712

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVM IAQ L+GY+L  AD+LRRAMGKK KE ++K+ E+F  G    G S      ++
Sbjct: 713  YQEQVMAIAQQLAGYTLGGADLLRRAMGKKKKEIIEKEFEKFREGMLGKGFSAEACQTLW 772

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            +++  FA Y FNKSH A Y ++SY TA++K +YP EF+AA +T    N +K   +  + R
Sbjct: 773  DVMLPFAGYAFNKSHTAGYGLVSYWTAYLKANYPAEFMAAQLTSNSGNKDKSAIYLAECR 832

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFC 869
            +  I+++PP VN   + F+   + I + L A++ VGT     I++   +   +    DF 
Sbjct: 833  RMGIKVLPPCVNESNLRFRAVGSDIRFGLGAVRNVGTNVVDSIVKTRQEKGLYTGFVDFL 892

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             + +    N+RV ESL+ AGA D FG +R+ ++   +   +    +++       ++F  
Sbjct: 893  DKSELPVCNKRVTESLIKAGAFDAFGLTRLSMIAVHEEAVEAVVPLKRQEAMGQFDLFGT 952

Query: 930  EKGTFSDKITLEKFS---------VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                 S ++                         E+ +LG Y S HPLD  + ILR+   
Sbjct: 953  GGDESSAEVAAASSPLAHVKFGPDEYPRKQLLAYERDMLGLYVSAHPLDGAERILRQHAP 1012

Query: 981  KGYEESV-ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            K     V    +   I L+ M+ S  ++  +KG     V   +     E  FFP
Sbjct: 1013 KPIAVLVDDAPKEGEIVLSGMISSVDRRVNKKGEPWAIVVVEDLDASMEVLFFP 1066


>gi|325929585|ref|ZP_08190699.1| DNA polymerase III, alpha subunit [Xanthomonas perforans 91-118]
 gi|325540095|gb|EGD11723.1| DNA polymerase III, alpha subunit [Xanthomonas perforans 91-118]
          Length = 1196

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1082 (38%), Positives = 602/1082 (55%), Gaps = 78/1082 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 110  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRDSLAGRLFNEGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   Y+K+  EM ++F+D+P+A++NT  +A+RC+  +++  
Sbjct: 228  RVCISSGRVLDDPKRPREYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   E     +  ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I 
Sbjct: 288  YFLPAYPVPE----DETLDSWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIPN     +                  +    +  V  L++++++LE L R
Sbjct: 464  GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLTR 523

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PLS+  P++ +   D     PVTQF+   +E  GL+KFDFLGL+TL
Sbjct: 524  NAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 583

Query: 580  TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  +  R        VD++ IP DD  TY  +  +  T  +FQ ESSGMR+ L+
Sbjct: 584  TIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQE
Sbjct: 644  DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQE 703

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L+
Sbjct: 704  QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 763

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R   
Sbjct: 764  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823

Query: 814  IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871
            + + PP VN     F+    + I Y L AIKGVG      I+E      P+ +L DFC+R
Sbjct: 824  LTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 883

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F    
Sbjct: 884  VGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943

Query: 932  GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
             +    ++ L +            E+  LGFY SGHP D ++  +R++           +
Sbjct: 944  PSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVRELVGCDLGALEKIL 1003

Query: 991  RGNN--------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                                      LA  VV  ++    KG    +V   +     E +
Sbjct: 1004 ASQQRGGGGGGGDGEKRAWRPEVSAILAGQVVGVRR----KGDSQVFVQLEDGRGRVECS 1059

Query: 1031 FF 1032
             F
Sbjct: 1060 AF 1061


>gi|294650615|ref|ZP_06727970.1| DNA-directed DNA polymerase III alpha subunit [Acinetobacter
            haemolyticus ATCC 19194]
 gi|292823498|gb|EFF82346.1| DNA-directed DNA polymerase III alpha subunit [Acinetobacter
            haemolyticus ATCC 19194]
          Length = 1187

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1035 (36%), Positives = 576/1035 (55%), Gaps = 39/1035 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ +S+ E  + + +++     D+ PA+A+TD +NL +A++F +     GI+PI
Sbjct: 3    FVHLGIHTEFSITESIVRIPDLVKAAINDEMPALALTDLSNLHAAVKFYEACLKKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + ++  ++                  LL  +  G++ L E+VSR ++  Q      
Sbjct: 63   LGSVIRLNDAEH---------------RATLLAMSNTGWRNLTEIVSRGFIEGQQLSIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E  +E LI+L G     + +    ++ Q AE  L  + + FG+R+Y+ L R  
Sbjct: 108  VQKEWVLE-QSEDLIILLG-QHSDVGKMLCSSNPQKAEPLLEAWIEKFGNRVYLALTRTE 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     + V+LA  +++ +VA N+  F+ ++D+ AH+  + +A   V+    RP+  
Sbjct: 166  RAGEEDFIQEAVKLAAKYQIGVVAHNDIHFIEKDDFYAHEARVCIADGYVLGDDKRPKNY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ Y K   +M  +FSD+P A+ENT  +A+RC+  LQ+    LP F   +   I    E
Sbjct: 226  SPEQYFKTGQQMSELFSDIPSAIENTYYVAQRCNVALQLGTYFLPDFPIPDGYTIDTYFE 285

Query: 309  NELRNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +  R      L       +         + Y +R+ +E+++I +M F GYFLIV DFIQW
Sbjct: 286  HLSRQGLEERLNHLYPISERDEDWEDIRKPYDERIKYEVDIILKMGFPGYFLIVMDFIQW 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DFC   
Sbjct: 346  AKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAG 405

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD VI YV   YG + V+QI TFG++ AK A+RDV R L   Y   DR+ K++P  P   
Sbjct: 406  RDRVIEYVAQNYGRQAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLGV 465

Query: 487  VSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                AI  + + ++      + D      + E++ KLEG+ R+   HA G+VI    ++ 
Sbjct: 466  DLATAIDMEPQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIAPGKITD 525

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD---L 598
               +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +R        +
Sbjct: 526  YSAVLCDPDGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIKSETPLEI 585

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP+D I
Sbjct: 586  ANVPLDDKDAYLVFAEANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMDLI 645

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   +    +   +HPL++ +L+ T G+++YQEQVMQ AQ  +GY+L  AD+LRRAMG
Sbjct: 646  PDFI-HRMHGGEFEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMG 704

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM KQ++ FI GA++  I +  A +IF+ + KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 705  KKKPEEMVKQRQIFIKGAAEKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAW 764

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYY 837
            +K HYP EF+AA ++ EM N + I     D R   ++++PPSVN     F   D R I Y
Sbjct: 765  LKAHYPSEFMAAVLSSEMQNTDSIVFLIDDCRNNKLEVLPPSVNMSLYHFHASDERTIVY 824

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L AIKGVG    + ++++   + P+  L DFC R+D KK+N+R LE+L+ AGALDC G 
Sbjct: 825  GLGAIKGVGEQAMQSVIDSRIKEGPYKDLFDFCHRIDLKKINKRTLEALIRAGALDCLGI 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R  L+  L    + A+    NR     ++F   +     +   +     +  VR + E+
Sbjct: 885  ERSSLMTQLPEAVQAAEQARSNRETGIMDLFGEVEEV--QRKPAKPVKPWSDEVRLKGEK 942

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              LG Y +GHP+DVY+  L+        E   T RG     A +VV       R      
Sbjct: 943  DTLGLYLTGHPIDVYRQELKAFIPAKLNELTPTRRGVTTVFAGLVVDIANFPNR-----I 997

Query: 1017 WVTFSEPAKEYEANF 1031
             +T  +     E + 
Sbjct: 998  MITLDDGTARVEISC 1012


>gi|307565570|ref|ZP_07628050.1| DNA polymerase III, alpha subunit [Prevotella amnii CRIS 21A-A]
 gi|307345729|gb|EFN91086.1| DNA polymerase III, alpha subunit [Prevotella amnii CRIS 21A-A]
          Length = 1241

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/1122 (30%), Positives = 540/1122 (48%), Gaps = 109/1122 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------- 62
             ++HL VH+ YS+L+G   ++N++DK   D    +AITD   +F   EF+          
Sbjct: 3    DYIHLHVHTHYSILDGQSKVSNLVDKAINDGMKGMAITDHGVMFGIKEFADYCATKNKER 62

Query: 63   CAAG---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
             A G    +PI GC++ +  +       +      +   +++L     GY+ LI+LVS+ 
Sbjct: 63   KAKGEEPFKPIFGCEMYVARRKLTDKVKE--MHDNSGYHLIVLAKNYNGYKNLIKLVSKS 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            + +D      R     L++   E LI+ +   +G I         + A +  L +KKLFG
Sbjct: 121  W-VDGYYYRPRTDREQLEKYH-EDLIICSACLAGEIPSKIRKGDIEGAREACLWYKKLFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            D  Y+ LQRH   D             +     ++Q A  + + LV TN+  F  +E  E
Sbjct: 179  DDFYLELQRHEVTDPNLIANREAFPLQQQVNRVLMQFAKDYNIKLVCTNDCHFEDKETAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++ +  +    R R +   + K R EM  IFSD+PEAL NT+EI  +      
Sbjct: 239  AHDHLLCLSTNDDLDDPKRMRYSKQEWFKTREEMNQIFSDVPEALSNTIEILNKIEIYDI 298

Query: 287  VHAPILPRFIEKECDDIQ------------------------------------------ 304
             H PI+P F   E    +                                          
Sbjct: 299  NHGPIMPFFPIPEDFGTEAQWREKFSKEDLYHEFTSDENGENQLPEQEANKVIDRLGGYE 358

Query: 305  -----KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 K E + L   A  G                ++   R+ FEL+V+  M F GYFLI
Sbjct: 359  KIYRIKFEADYLAKLAYDGACRLYGDPL------PEEVNSRIRFELHVMKTMGFPGYFLI 412

Query: 360  VADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V DFI  A+    + VGPGRGS AGSV AY L IT IDPL++ LLFERFLNPDR+++PD 
Sbjct: 413  VQDFINAAENELGVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRVNLPDI 472

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D DF  D R +V+++V +KYGHE+ A IIT+ ++  K +++DV R  ++P  + + LCK 
Sbjct: 473  DTDFDDDGRGKVLQWVMDKYGHEKCAHIITYSTMATKNSIKDVARVEKLPLERSNALCKA 532

Query: 479  IPNDPAHPVSLQ---AIADDSRFREAR-LADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            IP+   + + +    AI+     +EA    +      ++ ++ LEG  R    HA G +I
Sbjct: 533  IPDRLPNGMKMNLKNAISCTPMLQEAMVSENERERNTIKYAKMLEGTIRGTGIHACGFII 592

Query: 535  GDRPLSQLVPMYRDVRSDLP-----VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
               P+   VP+      D P     VTQ++   IE  GLIK DFLGLKTL+ L+++   +
Sbjct: 593  CRNPIDDWVPVSTATDPDFPDKKVPVTQYDGHVIETTGLIKMDFLGLKTLSELKEACKVI 652

Query: 590  AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             Q     +D+  IP DD  TY L     T+G FQ ES+GM++ L  + P   ED+IA+ +
Sbjct: 653  RQTTGKVIDIEKIPIDDALTYQLYQKGQTVGTFQFESAGMQKYLRELHPTVFEDLIAMNA 712

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  +  RKN    +    P ++  LK+T G+ +YQEQVM +++ L+ ++  
Sbjct: 713  LYRPGPMDYIPDFIKRKNDPSLVQYDIPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRG 772

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E+D LR+AMGKK K  +D  K +FI    +NG    I   I+    KFA Y FNKSHA  
Sbjct: 773  ESDALRKAMGKKKKNIVDAMKPKFIKQGQENGHDPKILEKIWSDWEKFASYAFNKSHATC 832

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y+ ++YQTA++K HYP E++AA MT     + +I K  ++ +   I+ + P VN   + F
Sbjct: 833  YSWVAYQTAYLKAHYPAEYMAALMTRRFSQITEITKLMEECKALKIETLGPDVNESQIGF 892

Query: 829  KVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             V     I + L+AIKG+GT  A +I++    + P+  + +F  RVD   +NR+V+ESL 
Sbjct: 893  GVNKHGEIRFGLSAIKGIGTGAAENIVKEREKNGPYKDIFNFIERVDLCSINRKVIESLA 952

Query: 887  FAGALDCFGY--SRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            ++G  D  G    R +           LD + +Y Q  +  +     ++F         +
Sbjct: 953  YSGGFDNLGPIKCREEYFGVNAKGEVFLDTLLRYGQLFQTAKAEAANSLFGGFDSVPVTR 1012

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES------VATIR 991
              +       +  +   E+ ++G Y S HPLD +  +L  +      +           +
Sbjct: 1013 PAIPVTEKWATIEKLNKERELVGIYLSAHPLDEFAVVLNHLCNTHCSQIHRNADMAELAK 1072

Query: 992  GNNIRLAAMVVSKQQKKT-RKGSRIGWVTFSEPAKEYEANFF 1032
               I    +V   ++  + +      +++  +     E   F
Sbjct: 1073 TEEITFGGIVTKVKESFSQKTNKPYAFISIEDFEGTAEIALF 1114


>gi|304388354|ref|ZP_07370467.1| DNA-directed DNA polymerase III alpha subunit [Neisseria meningitidis
            ATCC 13091]
 gi|304337671|gb|EFM03827.1| DNA-directed DNA polymerase III alpha subunit [Neisseria meningitidis
            ATCC 13091]
          Length = 1144

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1038 (38%), Positives = 585/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+PI    + I   D                  +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPIGAADVWIGNPD----------APDKPFRAMLIIRNDAGYLRLSELLTEAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  MELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TPD +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPDQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A    +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSRDDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L K
Sbjct: 406  FDVDFCQANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465

Query: 478  LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S   A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLSLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  IDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    D +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMNNAD--QKAANTNQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++              +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQVEIMV 1014


>gi|21230815|ref|NP_636732.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv.
            campestris str. ATCC 33913]
 gi|66769186|ref|YP_243948.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv.
            campestris str. 8004]
 gi|21112417|gb|AAM40656.1| DNA polymerase III alpha chain [Xanthomonas campestris pv. campestris
            str. ATCC 33913]
 gi|66574518|gb|AAY49928.1| DNA polymerase III alpha chain [Xanthomonas campestris pv. campestris
            str. 8004]
          Length = 1196

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1081 (38%), Positives = 604/1081 (55%), Gaps = 77/1081 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDLPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDVTPWRMTLLCRDREGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 110  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRDSLAGRLFAEGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFAAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   YLK+  EM ++F+D+P+A++NT+ +A+RC+  +++  
Sbjct: 228  RVCISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADVPDAIDNTLALAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   E     +  ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I 
Sbjct: 288  YFLPAYPVPE----DETLDSWIRSQSRDGLAARLEKNPIAPGKTRQDYVDRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIPN     +                  +    +  V  L++++++LE L R
Sbjct: 464  GLVDSVAKLIPNILGITLKDAMGEGKDTEMASPELIQRYQVEDDVRDLMDLARQLEDLTR 523

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PLS+  P++ +         PVTQF+   +E+ GL+KFDFLGL+TL
Sbjct: 524  NAGKHAGGVVIAPEPLSEFCPLFAEHDEGGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTL 583

Query: 580  TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  +  R        VD++ IP DD  TY  +  +  T  +FQ ESSGMR+ L+
Sbjct: 584  TIIDWAVKAINVRHARAGIDPVDITAIPLDDAPTYKGVFASGNTGAVFQFESSGMRRLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +N RK+G++ I+   P  + +LK+T G+++YQE
Sbjct: 644  DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQDIIYPDPRTEAILKDTYGIMVYQE 703

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L+
Sbjct: 704  QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAQKADEIFDLM 763

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R   
Sbjct: 764  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823

Query: 814  IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR 871
            + ++PP VN     F+    + I Y L AIKGVG      I+E    + P+ +L DFC+R
Sbjct: 824  LTVLPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERLRNGPYTTLLDFCTR 883

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F    
Sbjct: 884  VGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943

Query: 932  GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
             +    ++ L +            E+  LGFY SGHP D ++  +R++           +
Sbjct: 944  PSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHRDEVRELVGCDLSALDKIL 1003

Query: 991  RGNN-------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                                     LA  VV  ++    KG    +V   +     E + 
Sbjct: 1004 ASQQRGGGGGGDGEKRAWRPEVSAILAGQVVGVRR----KGDSQVFVQLEDGRGRVECSA 1059

Query: 1032 F 1032
            F
Sbjct: 1060 F 1060


>gi|254671593|emb|CBA09263.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha153]
          Length = 1144

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1038 (37%), Positives = 583/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+PI    + I                      +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPGQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A    +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSRDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L K
Sbjct: 406  FDVDFCQANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465

Query: 478  LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S   A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLSLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  IDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    D +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMNNAD--QKAANTNQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++              +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQVEIMV 1014


>gi|325204784|gb|ADZ00238.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M01-240355]
          Length = 1144

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1038 (37%), Positives = 583/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLVAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+PI    + I                      +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPGQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A    +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSRDDYLIKLSNKGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV++KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L K
Sbjct: 406  FDVDFCQANRGRVIEYVRDKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465

Query: 478  LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S   A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLSLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  IDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    D +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMNNAD--QKAANTNQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++              +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQVEIMV 1014


>gi|319639431|ref|ZP_07994181.1| DNA polymerase III subunit alpha [Neisseria mucosa C102]
 gi|317399326|gb|EFV79997.1| DNA polymerase III subunit alpha [Neisseria mucosa C102]
          Length = 1144

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1038 (37%), Positives = 586/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALCISDLMNEFGLVKFYKACRG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+PI    + I                      +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +      ++   A    L +   F D  Y
Sbjct: 110  RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNSNEDAARAAALKYAAWFPDAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F++ +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357
              +    ++ L   +  GL+ R+ Q    +   A    +Y++RLDFELN+I +MKF GYF
Sbjct: 290  LSL----DDYLVKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV+ KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L K
Sbjct: 406  FDVDFCQANRGRVIEYVREKYGADAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465

Query: 478  LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S  +A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLSLEKAMEAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKTTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  VDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VQLIDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++              +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQIEIMV 1014


>gi|269469110|gb|EEZ80658.1| DNA polymerase III, alpha subunit [uncultured SUP05 cluster
            bacterium]
          Length = 1150

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1051 (37%), Positives = 597/1051 (56%), Gaps = 45/1051 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL  HS YS+    + +  ++DK       AIA+TD  NLF+A++F QK+ +
Sbjct: 1    MPNI-DFVHLHCHSEYSVKNSLIRIPKLIDKTKDLGMKAIALTDVGNLFAAVKFYQKSIS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI G +L +  +                 S++LL    +GY  L EL+S  YL  Q
Sbjct: 60   NGIKPIFGAELTVKDK-------------AQNFSVLLLCQDRQGYANLSELISLSYLHGQ 106

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              + V I    L     +GLIM+   +   +      N +  A +++  +  +F DR Y+
Sbjct: 107  SVEGVSITTEQLVN-HHQGLIMIAPHTRSDVAHHLMANQALEAREKVQFWASVFTDRFYL 165

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            ++QR     D       ++L     +PLVATN+  FL   DY+AH+  + ++   ++   
Sbjct: 166  SVQRTGRANDEKYLHLCLELGLESGIPLVATNDVEFLVASDYQAHEARICISQGKLLDDA 225

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R +  + + YLK+  EM ++FSDLP+ L N+VEIA+RC+   ++H              
Sbjct: 226  RREKFYSAEQYLKSADEMAALFSDLPQLLANSVEIAKRCNLHFELHKKNYLPNF---PVP 282

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                       ++ AGL  R          + + Y +RL FEL VI +M F GYFLIVAD
Sbjct: 283  EGLSIAQFFEQESKAGLGKR----LEKIKANRKIYDERLTFELGVIVQMDFPGYFLIVAD 338

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI W++ N+IPVGPGRGSGAGS+ AYAL IT++DP++  LLFERFLNP+R+SMPDFDIDF
Sbjct: 339  FIAWSRNNDIPVGPGRGSGAGSLVAYALGITNVDPIKHELLFERFLNPERVSMPDFDIDF 398

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C DRRDEVI YV  KYG E+V+QIIT+G + AK  +RDVGR L  PY   DR+ K IPND
Sbjct: 399  CTDRRDEVITYVAKKYGQEKVSQIITYGKMAAKGVVRDVGRVLGHPYGFSDRISKSIPND 458

Query: 483  PAHPVSL-------------QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
                +S              +        ++   ++ SV  L+++S +LEGL R+  THA
Sbjct: 459  LKINLSRALGIFDQKDSKEDKDKWYSEELKQRYDSEESVTALIDLSLELEGLVRNVGTHA 518

Query: 530  AGIVIGDRPLSQLVPMYRDV-RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
             G++I    +S   P+Y+    SD  V+QF+MK +E  GL+KFDFLGL  LT++ K++  
Sbjct: 519  GGVLIAPSKISDFCPIYKGPGESDGVVSQFDMKDVEALGLVKFDFLGLSNLTVIDKTVKM 578

Query: 589  LAQRGVKVDLSLIP---FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            +  +G+  +L  I     DD   Y LL    T GIFQLES GMR  L+ ++ D  EDI+A
Sbjct: 579  IHAKGLSDELIDIDALSLDDKAVYKLLQRSDTTGIFQLESDGMRGYLKKLKADSFEDIVA 638

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEK-IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            +++LYRPGP+   +V +       +     HP+++ +LK T GV +YQEQVM+ AQ+++G
Sbjct: 639  MLALYRPGPLGAGMVDDYINVKHGEDAKYPHPMLEEILKPTNGVFLYQEQVMKSAQVMAG 698

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            YSL  AD+LRRAMGKKI  EM+KQ++ F+ GA+K  I K  A  IF+L+ KF+ YGFNKS
Sbjct: 699  YSLGGADLLRRAMGKKIASEMEKQRDVFVKGAAKKKIKKEKANEIFDLIDKFSGYGFNKS 758

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+ AYA ISYQTAW+K HYP  F+A+ ++ +MD+ +KI     + +   + +  P+V   
Sbjct: 759  HSVAYAYISYQTAWLKAHYPAAFMASVLSDKMDDTDKIAFTIGEVQNMGLIVNGPNVCES 818

Query: 825  CVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVL 882
              +F + D++ I Y L AIKGVG    + ++    A   +  L +FC+R++ K LN+R +
Sbjct: 819  DYEFSIKDDKTIVYGLGAIKGVGEALVQTLVAEREAGGEYKDLFEFCARIEKKSLNKRAI 878

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E+L+++GA D FG  R  LL++     K A+  + ++TN    +F   +     +++ + 
Sbjct: 879  EALIYSGAFDVFGVDRASLLKTYPKAVKQAEQRQNDQTNGQNTLFNSIQEHAEYELSYDP 938

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                +   R + E+ V+G+YF  HP D YK  L+++G+   +++V       +R+ A++ 
Sbjct: 939  CPRFSFKERLKLEKSVMGYYFYDHPTDEYKDDLKRIGVTLPKDTV-LRNNKEVRVLALIS 997

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +   TR G ++  +   + + +  A  FP
Sbjct: 998  ELRYITTRSGDQMASIIIEDGSTKLSAVIFP 1028


>gi|71898629|ref|ZP_00680799.1| DNA polymerase III alpha subunit [Xylella fastidiosa Ann-1]
 gi|71731576|gb|EAO33637.1| DNA polymerase III alpha subunit [Xylella fastidiosa Ann-1]
          Length = 1193

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1078 (37%), Positives = 622/1078 (57%), Gaps = 74/1078 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             + SFVHL +H+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  L I   ++                + LL     GY  L
Sbjct: 62   FALIKFYKAAETVGIKPISGADLLIAEPEHTPWG------------MTLLCRDHTGYLNL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
             +L+SR +L     +  V +   W+++   + L  L G     + + F    + +AE++L
Sbjct: 110  SQLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIG-RHSLVGQLFAKGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R     +       +Q+A    +P++A+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + +A   ++    RPR  +   YL++  EM ++F+D+P+AL+NT  +A+RC+  +++  
Sbjct: 228  RVCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +         +  ++ +R ++  GLE RL +  +A G   +DY  RL+FEL+ I 
Sbjct: 288  YFLPNYPVPN----DETLDSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M FSGYFLIVADFIQW K+  IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC +RRDEVI YV  KYG ERV+QIIT+G++ AKA +RDVGR L  PY
Sbjct: 404  PERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADD------SRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIP+     +       +      +   +   A+  V  LL ++++LE L R
Sbjct: 464  GLVDSVAKLIPSTLGITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTR 523

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PL++  P++ +   +     PVTQF+   +E+ GL+KFDFLGL+TL
Sbjct: 524  NAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTL 583

Query: 580  TLLQKSLDFLAQRGVKVDLSLI-----PFDDHETY-HLLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  + +R  +  +  +     P DD  TY  +  +  T  +FQ ESSGMR+ L+
Sbjct: 584  TIIDWAVKAINKRHARACIDPVDITALPLDDIPTYKDVFASGNTSAVFQFESSGMRRLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +  RK+G ++ +   P    +LK+T G+++YQE
Sbjct: 644  DARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQE 703

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K G+    A  IF+L+
Sbjct: 704  QVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLM 763

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  +AR  N
Sbjct: 764  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNLN 823

Query: 814  IQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
            ++++ P++N     F+    + I Y L AIKGVG +    I++      P+ SL DFC+R
Sbjct: 824  LKVLRPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCTR 883

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-E 930
            V S KLNRR LE+++ AGALD  G +R  ++  L  + K  + + + R +   ++F + +
Sbjct: 884  VTSAKLNRRALEAMIQAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNAD 943

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE----- 985
             GT + ++ L +      +     E+  LG YFSGHP D Y+  ++++            
Sbjct: 944  PGTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALER 1003

Query: 986  -SVATIRGN----------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +  RGN          N  LA +VVS ++    KG    +V   +     E + F
Sbjct: 1004 ILGSQQRGNGEKRTWQSEVNTILAGLVVSVRR----KGDSQVFVQLEDGRGRIECSAF 1057


>gi|237785363|ref|YP_002906068.1| DNA polymerase III subunit alpha [Corynebacterium kroppenstedtii DSM
            44385]
 gi|237758275|gb|ACR17525.1| DNA polymerase III, alpha subunit [Corynebacterium kroppenstedtii DSM
            44385]
          Length = 1199

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/1080 (28%), Positives = 523/1080 (48%), Gaps = 56/1080 (5%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +   +  S SFVHL  H+ YS+L+G   ++ ++D++     PA+ +TD  N+F +  F +
Sbjct: 4    MIANMANS-SFVHLHNHTEYSMLDGMAKVDLLVDEVKRQNMPAVGMTDHGNMFGSDAFYR 62

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQ 110
               A  I+PIIG +  +                       +         ++   A G +
Sbjct: 63   AMTANDIKPIIGVECYMAPDSRFNKKRVRWGEAHQKRDDVSASGAYLHQTMIAENATGLK 122

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L  L S      Q  +  R+    + E  +EG+I  T   SG +           A K 
Sbjct: 123  NLFYLSSMASYEGQLGKWPRMDAELIAE-HSEGIIATTACPSGEVQTRLRLGQFDEALKA 181

Query: 171  LLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
               ++ ++G D  ++ L  H    ++   ++++++     +P + TN+  +++++   +H
Sbjct: 182  AAKWQDIYGKDNYFLELMDHGIEIEQRVRNELLEIGRKLNIPPLVTNDCHYVTKDQARSH 241

Query: 229  DVLMAVAHSTVVSQK------DRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARR 280
            +V++ V   + +++       +R     D Y    +  +    D       +NT+ IA R
Sbjct: 242  EVMLCVQTGSTMNEPTLDQGGNRFAFNGDGYYLKSAREMRDTWDDMVPGGCDNTLLIAER 301

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
                 ++  P     + K          + L ++   GL+ R     +      Q+Y  R
Sbjct: 302  VGDYSEIWEPHTHDRMPKYDVPEGYTPTSWLTHEVEQGLKKRFEGQPV-----PQEYTDR 356

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
              +E+ VI    +  YFL+VAD I+ A++  I VGPGRGS AGS+ AYALTIT+IDPL+ 
Sbjct: 357  AKYEIGVIDFKGYPSYFLVVADLIKHARRVGIRVGPGRGSAAGSLVAYALTITNIDPLQH 416

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNP+R S PD DIDF   RR E+IRY  + +G ++VAQ+ITFG+++ K AL+D
Sbjct: 417  GLLFERFLNPERPSAPDIDIDFDDRRRGEMIRYAADNWGEDKVAQVITFGTVKTKQALKD 476

Query: 461  VGRALQMPYSQVDR---LCKLIPNDPAHPVS--------LQAIADDSRFREARLADPSVD 509
              RA                L     A  +             ++ +  R+    DP V 
Sbjct: 477  SARAHFGQPGFQMAERITKALPAPIMAKDIPLSGIVDPEHPRYSEAAEVRQLIETDPDVK 536

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            ++ + ++ LEG+ R A  HA  +++   PL   +PM++  +    +T +     E  GL+
Sbjct: 537  KIFDTARGLEGVVRQAGVHACAVIMASVPLLDHIPMWKRAQDGAIITGWPYPACEAIGLL 596

Query: 570  KFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K DFLGL+ LT++   ++ + + RG  +DL  +   D  TY LL+   TLG+FQL+S GM
Sbjct: 597  KMDFLGLRNLTVIGDCIENIKENRGEDLDLEGLSVVDEPTYELLSRGDTLGVFQLDSGGM 656

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKE-- 684
            R+ L+ M P    DI+A ++LYRPGP+     ++  +RKNG+EKI  IHP ++  L++  
Sbjct: 657  RELLKRMGPTEFSDIVAALALYRPGPMGEGAHWSYADRKNGREKITPIHPELEEPLRDIL 716

Query: 685  --TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
              T G+I+YQEQ+M+I+Q ++ YS  +AD  R+AMGKK  E + K++  F +G  +NG S
Sbjct: 717  AETYGLIVYQEQIMKISQKVANYSAGQADSFRKAMGKKKPEVLAKERVSFEAGMKENGYS 776

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
                  +++++  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K 
Sbjct: 777  DDAINTLWKVILPFAGYAFNKSHAAGYGLVSFWTAYLKANYTAEYMAALLTSVSDKKDKS 836

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKP 861
              +  D R   I ++ P VN+    F+     I + L A++ VG      I+        
Sbjct: 837  AIYLSDCRHLGIDVLSPDVNSSKYTFQSVGKDIRFGLGAVRNVGEDVVESIVSTRREKGA 896

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F    D+ +++D+   NRRV ESL+ AGA D  G+ R  L    ++        +K    
Sbjct: 897  FKDFTDYLNKIDTIACNRRVTESLIKAGAFDSMGHPRKGLYLIHEDAVDSVISTKKAADK 956

Query: 922  KHENIFAHEKGTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
               ++FA   G   ++     I +      +   +   E+ +LG Y S HPLD Y+  L 
Sbjct: 957  GQFDLFAGLGGEAEEEDSAFSIEVPD-QEWDRKHKLALEREMLGLYVSEHPLDGYEETLA 1015

Query: 977  KMGIKGYEESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
                      +        +I +  ++ +  ++ ++K GS    VT  +      +   F
Sbjct: 1016 AQTDTPLTTVLSGELKDKQDIVIGGIISAVDRRFSKKDGSPWAIVTIEDHNGASVDILVF 1075


>gi|325131475|gb|EGC54182.1| DNA polymerase III, alpha subunit [Neisseria meningitidis M6190]
 gi|325137580|gb|EGC60161.1| DNA polymerase III, alpha subunit [Neisseria meningitidis ES14902]
          Length = 1144

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/1038 (37%), Positives = 584/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+P+    + I   D                  +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPVGAADVWIGNPD----------APDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+L     LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLVEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A+   +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSLDDYLIKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L K
Sbjct: 406  FDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465

Query: 478  LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+    A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  IDVGKIPLDDQVAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++  +   +       +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQVEIMV 1014


>gi|319440285|ref|ZP_07989441.1| DNA polymerase III subunit alpha [Corynebacterium variabile DSM
            44702]
          Length = 1188

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/1072 (29%), Positives = 508/1072 (47%), Gaps = 51/1072 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++KS SFVHL  H+ YS+L+G   ++ +  +++    PA+ +TD  N+F +  F     A
Sbjct: 1    MKKS-SFVHLHNHTEYSMLDGMAKVDLLAQEVSRQGMPAVGMTDHGNMFGSDAFYHAMTA 59

Query: 65   AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            A I+PIIG +  +     L          +                ++   A G   L  
Sbjct: 60   ADIKPIIGIETYMAPDSRLIKDRIKWGQPEQKRDDVAGGGYYLHQTMMAENATGLHNLFR 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   EG+I  TG  SG +           A +    +
Sbjct: 120  LSSLASYEGQVSKYPRMDAEIVAE-HAEGIIATTGCPSGDVQTRLRLGQFDKALEAAAMW 178

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++G D  ++ L  H    ++     ++++    ELP + TN+  ++ ++  + H+V++
Sbjct: 179  QDIYGKDNYFLELMDHGLDIEKRVRDDLLEIGKRLELPPLVTNDCHYVLQKQAKPHEVML 238

Query: 233  AVAHSTVVSQK------DRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFI 284
             V     + +        R   + D Y    +EM+  + D       +NT+ IA R    
Sbjct: 239  CVQTGATLEEPTLDEGGKRFAFSGDGYYIKPAEMLREYWDPIVPDGCDNTLWIAERVQDY 298

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
             ++        + K          + L ++   GL  R   G        Q+Y  R  +E
Sbjct: 299  GELWEEHTHDRMPKYDVPEGHTPTSWLTSEVHDGLIERFNGG-----EVPQEYLDRAKYE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            ++VI    +  YFL+VAD I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   L+F
Sbjct: 354  IDVIDMKGYPSYFLVVADLIKHARSIGISVGPGRGSAAGALVAYALTITNIDPIEHGLMF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R S PD DIDF  DRR E+IRY    +G ++VAQ+ITFG+++ K A++D  RA
Sbjct: 414  ERFLNPERPSAPDIDIDFADDRRSEMIRYAAENWGEDKVAQVITFGTVKTKQAIKDASRA 473

Query: 465  LQMPYSQVDR-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
                                   K IP             + +  R     DP V  + +
Sbjct: 474  HHGQPGFQIADRITKALPPAQAAKDIPLSGIMDPEHPRYGEAAEIRTLIETDPVVKEIYD 533

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             +  LEG+ R A  HA  +++   PL   +PM++       +T +     E  GL+K DF
Sbjct: 534  DALGLEGVVRQAGVHACAVIMASVPLMDHIPMWKRPADGAYITGWPYPACEAIGLLKMDF 593

Query: 574  LGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL+ LT++   +  + + RG   DL  +  DD  +Y LL    TLGIFQL+S GM++ L
Sbjct: 594  LGLRNLTVIADCIKNIKRNRGEDFDLENLETDDPASYELLARGDTLGIFQLDSGGMQELL 653

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPML----KETQ 686
            + M+P    DI+A ++LYRPGP+       Y +RKNG++ I  IHP +   +    +ET 
Sbjct: 654  KRMKPTGFNDIVASLALYRPGPMGVGAHWDYADRKNGRKPIEPIHPELAESIKDILEETY 713

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+I+YQEQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + K+  +F +G   NG S    
Sbjct: 714  GLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAKEFGKFSAGMKSNGYSDEAI 773

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++ +  FA Y FNKSHAA Y ++S+ TA++K HY  E++AA +T   D  +K   + 
Sbjct: 774  KALWDTVLPFAGYAFNKSHAAGYGLVSFWTAYLKEHYTAEYMAALLTSVADKKDKSAIYL 833

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSL 865
             D R   ++++ P VN     F+     I + L A++ VG      I++A  +   F   
Sbjct: 834  ADCRHLGVKVLSPDVNESAYTFQSVGEDIRFGLGAVRNVGEDVVDSIVKAREEKGKFTDF 893

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             D+  ++D+   N+RV +SL+ AGA D  G+ R  L    ++        +K       +
Sbjct: 894  SDYLDKIDATACNKRVTDSLIKAGAFDSLGHPRKGLNLIHEDAVDAVTSTKKAAAKGQFD 953

Query: 926  IFAHEKGTFSDKITLEKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            +FA      +      +      +       E+ +LG Y SGHPLD ++  L        
Sbjct: 954  LFAGLSEEETGDAFKVEVPDQEWDRKHALTLEKEMLGLYVSGHPLDGFEASLDAQIDTPL 1013

Query: 984  EESV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP-AKEYEANFF 1032
               +         +++  ++ S  ++  +KG+    VT  +  + + E   F
Sbjct: 1014 TTVLSGELPDRKTVKVGGIISSVDRRVDKKGNPWAIVTIEDQHSAQAELLVF 1065


>gi|21242159|ref|NP_641741.1| DNA polymerase III subunit alpha [Xanthomonas axonopodis pv. citri
            str. 306]
 gi|21107574|gb|AAM36277.1| DNA polymerase III alpha chain [Xanthomonas axonopodis pv. citri str.
            306]
          Length = 1196

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1082 (38%), Positives = 601/1082 (55%), Gaps = 78/1082 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 110  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRDSLAGRLFNEGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGRDGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   Y+K+  EM ++F+D+P+A++NT  +A+RC+  +++  
Sbjct: 228  RVCISSGRVLDDPKRPRDYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   E     +  +  +R+++  GL  RL +  IA G   QDY  RL+FEL+ I 
Sbjct: 288  YFLPAYPVPE----DETLDTWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIPN     +                  +    +  V  L++++++LE L R
Sbjct: 464  GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLTR 523

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PLS+  P++ +   D     PVTQF+   +E  GL+KFDFLGL+TL
Sbjct: 524  NAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 583

Query: 580  TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  +  R        VD++ IP DD  TY  +  +  T  +FQ ESSGMR+ L+
Sbjct: 584  TIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQE
Sbjct: 644  DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQE 703

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L+
Sbjct: 704  QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 763

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R   
Sbjct: 764  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823

Query: 814  IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871
            + + PP VN     F+    + I Y L AIKGVG      I+E      P+ +L DFC+R
Sbjct: 824  LTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 883

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F    
Sbjct: 884  VGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943

Query: 932  GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
             +    ++ L +            E+  LGFY SGHP D ++  +R++           +
Sbjct: 944  PSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHRDEVRELVGCDLGALEKIL 1003

Query: 991  RGNN--------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                                      LA  VV  ++    KG    +V   +     E +
Sbjct: 1004 ASQQRGGGGGGGDGEKRAWRPEVGAILAGQVVGVRR----KGDSQVFVQLEDGRGRVECS 1059

Query: 1031 FF 1032
             F
Sbjct: 1060 AF 1061


>gi|188992333|ref|YP_001904343.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv.
            campestris str. B100]
 gi|167734093|emb|CAP52299.1| DNA polymerase III alpha subunit [Xanthomonas campestris pv.
            campestris]
          Length = 1219

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1082 (38%), Positives = 604/1082 (55%), Gaps = 78/1082 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 24   STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDLPALAVTDLNNL 83

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 84   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 131

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 132  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRDSLAGRLFAEGRADLAEQQL 189

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 190  ADWQRVFGDGLHLELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFAAHEA 249

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   YLK+  EM ++F+D+P+A++NT+ +A+RC+  +++  
Sbjct: 250  RVCISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADVPDAIDNTLALAQRCNIEMRLGT 309

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   E     +  ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I 
Sbjct: 310  YFLPAYPVPE----DETLDSWIRSQSRDGLAARLEKNPIAPGKTRQDYVDRLEFELDTII 365

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 366  KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 425

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 426  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 485

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIPN     +                  +    +  V  L++++++LE L R
Sbjct: 486  GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPELIQRYQVEDDVRDLMDLARQLEDLTR 545

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PLS+  P++ +         PVTQF+   +E+ GL+KFDFLGL+TL
Sbjct: 546  NAGKHAGGVVIAPEPLSEFCPLFAEHDEGGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTL 605

Query: 580  TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  +  R        VD++ IP DD  TY  +  +  T  +FQ ESSGMR+ L+
Sbjct: 606  TIIDWAVKAINVRHARAGIDPVDITAIPLDDAPTYKGVFASGNTGAVFQFESSGMRRLLK 665

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +N RK+G++ I+   P  + +LK+T G+++YQE
Sbjct: 666  DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQDIIYPDPRTEAILKDTYGIMVYQE 725

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L+
Sbjct: 726  QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAQKADEIFDLM 785

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R   
Sbjct: 786  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 845

Query: 814  IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR 871
            + ++PP VN     F+    + I Y L AIKGVG      I+E    + P+ +L DFC+R
Sbjct: 846  LTVLPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERLRNGPYTTLLDFCTR 905

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F    
Sbjct: 906  VGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 965

Query: 932  GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
             +    ++ L +            E+  LGFY SGHP D ++  +R++           +
Sbjct: 966  PSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHRDEVRELVGCDLSALDKIL 1025

Query: 991  RGNN--------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                                      LA  VV  ++    KG    +V   +     E +
Sbjct: 1026 ASQQRGGGGGGGDGEKRAWRPEVSAILAGQVVGVRR----KGDSQVFVQLEDGRGRVECS 1081

Query: 1031 FF 1032
             F
Sbjct: 1082 AF 1083


>gi|217970003|ref|YP_002355237.1| DNA polymerase III subunit alpha [Thauera sp. MZ1T]
 gi|217507330|gb|ACK54341.1| DNA polymerase III, alpha subunit [Thauera sp. MZ1T]
          Length = 1174

 Score =  695 bits (1794), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1047 (39%), Positives = 600/1047 (57%), Gaps = 40/1047 (3%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P FVHL++HS YS+ +G + L+  +   AAD  PA+ ++D  NLF  ++F + A   
Sbjct: 15   PSAPRFVHLRLHSEYSITDGIVQLDQAIAAAAADGMPALGVSDLANLFGMVKFYKGARGK 74

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI+PI+G    I  +                  ++L+     GY +L EL++R YL ++ 
Sbjct: 75   GIKPIVGVDAWIRNEAERDKPQ----------RVLLICKNRAGYGQLCELLTRAYLENKH 124

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            +    +   W +      L+ L+G  SG I  A    +  +AE+    + +LF D  Y+ 
Sbjct: 125  RGRAEMRREWFENGAASALLCLSGAMSGDIGAAIAAGNLALAEQLAADWARLFPDAFYIE 184

Query: 186  LQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +QR  H G + Y     V+LA    LP+VAT+   FL  ED++AH+  + +A   V++ K
Sbjct: 185  IQRAGHPGTESYIRHA-VELAGRLGLPVVATHPVQFLKREDFKAHEARVCIAQGYVLADK 243

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  T + YLK+++EM  +F+DLPEALEN VEIARRCS  +Q+    LP F   E   
Sbjct: 244  RRPRDFTEEQYLKSQAEMCELFADLPEALENAVEIARRCSLTVQLGKNFLPLFPTPEGM- 302

Query: 303  IQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 ++ L  +A  GLE RLAQ       +      Y QRL FE + I +M F GYFLI
Sbjct: 303  ---TLDDFLVAEAKKGLEERLAQLYPHPEERERQRPRYEQRLKFETDTIIQMGFPGYFLI 359

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFIQW K N +PVGPGRGSGAGS+ AY+L ITDIDPL ++LLFERFLNP+R+SMPDFD
Sbjct: 360  VADFIQWGKNNGVPVGPGRGSGAGSLVAYSLKITDIDPLEYALLFERFLNPERVSMPDFD 419

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQD R  VI YV+ +YG + V+QI TFG++ +KA +RDVGR L +PY   DRL KLI
Sbjct: 420  IDFCQDNRYRVIEYVRERYGKDAVSQIATFGTMASKAVVRDVGRVLDLPYGLCDRLSKLI 479

Query: 480  PNDPAHPVS-LQAIADDSRFREAR---LADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            P + A PVS  +A   + +  E         SV  L  ++Q LEGL R+   HA G++I 
Sbjct: 480  PIEGAKPVSLNKAYEMEPQIGEMMADGNDGESVRDLWSLAQPLEGLSRNVGMHAGGVLIA 539

Query: 536  DRPLSQLVPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
               L+   P+Y     D  PV+QF+   +E  GL+KFDFLGL+ LT+++ +L+++A+  G
Sbjct: 540  PGKLTDFCPLYIADGDDATPVSQFDKDDVEAVGLVKFDFLGLRNLTIIELALEYVARLEG 599

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             + DL  + F+D   Y +L    T  IFQ+ES GM++ L+ + PD  EDIIA+++LYRPG
Sbjct: 600  SRPDLMSLGFEDPAAYQILKDANTTAIFQVESDGMKKLLKKLAPDRFEDIIAVLALYRPG 659

Query: 654  PIDNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+ + +V +     K  ++I   HP +   L+ T GVI+YQEQVMQI+Q++ GY+L  AD
Sbjct: 660  PLGSGMVDDFILRKKGQQEIDYFHPDLKACLEPTYGVIVYQEQVMQISQIIGGYTLGGAD 719

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  +EM K +     GA + G    +A  +F+L+ KFA+YGFNKSH AAYAV
Sbjct: 720  MLRRAMGKKKADEMAKHRATIAEGAKQKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAV 779

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++Y TAW+K H+   F+AA+M+ ++DN + +K F +D     I+++PP VN     F   
Sbjct: 780  VTYHTAWLKAHHCAAFMAATMSSDLDNTDTVKIFYEDTLANGIKVLPPDVNASDYRFVPV 839

Query: 832  DNR-IYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            D + I Y L A+KGVG    R I+ A      F  L DFC RVD + +NRRV+E+L+ AG
Sbjct: 840  DRKIIRYGLGAVKGVGEPAVRAILAAHEKGGDFRDLFDFCERVDRRMVNRRVIEALIRAG 899

Query: 890  ALDCF----GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            A+D      G  R QL+ ++    + A+    N       +F              K   
Sbjct: 900  AMDTLPGHKGLDRAQLMATVALAMEAAEQAAANAMQG--GLFDLMPEAAGAAPEFAKVRA 957

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                 R + E+  +GF+ SGHP + +KP +R+   +   +   +       LA +V+ ++
Sbjct: 958  WTERERLKEEKLAIGFFLSGHPFNAFKPEVRRFVRRTLAQLEPSRDIT--MLAGVVMEQR 1015

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             K   +G  + +V   +  +  E   +
Sbjct: 1016 TKVGNRGK-MAFVLLDDGTEPREVTVY 1041


>gi|309378417|emb|CBX22970.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 1144

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1038 (37%), Positives = 584/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+P+    + I                      +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPVGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A    +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSLDDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++  D+L K
Sbjct: 406  FDVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSK 465

Query: 478  LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S   A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLSLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  VDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ K   IHPL++ +L  T G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-KFQYIHPLLEGILDPTYGIMVYQEQVMQVAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    D +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLVDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   + ++     +        +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVCQIAPTKLDRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQVEIMV 1014


>gi|294666388|ref|ZP_06731634.1| DNA polymerase III subunit alpha [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 10535]
 gi|292603830|gb|EFF47235.1| DNA polymerase III subunit alpha [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 10535]
          Length = 1196

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1082 (38%), Positives = 601/1082 (55%), Gaps = 78/1082 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 110  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRDSLAGRLFNEGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGRDGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   Y+K+  EM ++F+D+P+A++NT  +A+RC+  +++  
Sbjct: 228  RVCISSGRVLDDPKRPRDYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   E     +  ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I 
Sbjct: 288  YFLPAYPVPE----DETLDSWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIPN     +                  +    +  V  L++++++LE L R
Sbjct: 464  GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLTR 523

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PLS+  P++ +   D     PVTQF+   +E  GL+KFDFLGL+TL
Sbjct: 524  NAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 583

Query: 580  TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  +  R        VD++ IP DD  TY  +  +  T  +FQ ESSGMR+ L+
Sbjct: 584  TIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQE
Sbjct: 644  DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQE 703

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L+
Sbjct: 704  QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 763

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R   
Sbjct: 764  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823

Query: 814  IQIMPPSVNTPCVDF-KVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871
            + + PP VN     F     + I Y L AIKGVG      I+E      P+ +L DFC+R
Sbjct: 824  LTVKPPRVNESAYMFAAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 883

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F    
Sbjct: 884  VGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943

Query: 932  GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
             +    ++ L +            E+  LGFY SGHP D ++  +R++           +
Sbjct: 944  PSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVRELVGCDLGALEKIL 1003

Query: 991  RGNN--------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                                      LA  VV  ++    KG    +V   +     E +
Sbjct: 1004 ASQQRGGGDGGGDGEKRAWRPEVSAILAGQVVGVRR----KGDSQVFVQLEDGRGRVECS 1059

Query: 1031 FF 1032
             F
Sbjct: 1060 AF 1061


>gi|294625959|ref|ZP_06704571.1| DNA polymerase III subunit alpha [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 11122]
 gi|292599754|gb|EFF43879.1| DNA polymerase III subunit alpha [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 11122]
          Length = 1196

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1082 (38%), Positives = 601/1082 (55%), Gaps = 78/1082 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 110  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRDSLAGRLFNEGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGRDGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   Y+K+  EM ++F+D+P+A++NT  +A+RC+  +++  
Sbjct: 228  RVCISSGRVLDDPKRPRDYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   E     +  ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I 
Sbjct: 288  YFLPAYPVPE----DETLDSWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIPN     +                  +    +  V  L++++++LE L R
Sbjct: 464  GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLTR 523

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PLS+  P++ +   D     PVTQF+   +E  GL+KFDFLGL+TL
Sbjct: 524  NAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 583

Query: 580  TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  +  R        VD++ IP DD  TY  +  +  T  +FQ ESSGMR+ L+
Sbjct: 584  TIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQE
Sbjct: 644  DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQE 703

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L+
Sbjct: 704  QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 763

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R   
Sbjct: 764  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823

Query: 814  IQIMPPSVNTPCVDF-KVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871
            + + PP VN     F     + I Y L AIKGVG      I+E      P+ +L DFC+R
Sbjct: 824  LTVKPPRVNESAYMFAAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 883

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F    
Sbjct: 884  VGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943

Query: 932  GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
             +    ++ L +            E+  LGFY SGHP D ++  +R++           +
Sbjct: 944  PSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVRELVGCDLGALEKIL 1003

Query: 991  RGNN--------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                                      LA  VV  ++    KG    +V   +     E +
Sbjct: 1004 ASQQRGGGGGGGDGEKRAWRPEVSAILAGQVVGVRR----KGDSQVFVQLEDGRGRVECS 1059

Query: 1031 FF 1032
             F
Sbjct: 1060 AF 1061


>gi|313669043|ref|YP_004049327.1| DNA polymerase III, alpha subunit [Neisseria lactamica ST-640]
 gi|313006505|emb|CBN87969.1| putative DNA polymerase III, alpha subunit [Neisseria lactamica
            020-06]
          Length = 1144

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1038 (38%), Positives = 585/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+P+    + I                      +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPVGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      MV  F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPGQFFIPPETMVERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A    +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSLDDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++  D+L K
Sbjct: 406  FDVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSK 465

Query: 478  LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S   A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLSLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  VDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ K   IHPL++ +L  T G+++YQEQVMQ+AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-KFQYIHPLLEGILDPTYGIMVYQEQVMQVAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    D +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLVDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   + ++     +        +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVCQIAPTKLDRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQVEIMV 1014


>gi|325916626|ref|ZP_08178889.1| DNA polymerase III, alpha subunit [Xanthomonas vesicatoria ATCC
            35937]
 gi|325537180|gb|EGD08913.1| DNA polymerase III, alpha subunit [Xanthomonas vesicatoria ATCC
            35937]
          Length = 1195

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1080 (38%), Positives = 602/1080 (55%), Gaps = 76/1080 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 110  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRDSLAGRLFSEGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   YLK+  EM ++F+D+P+A++NT  +A+RC+  +++  
Sbjct: 228  RVCISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADIPDAIDNTQALAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   E     +  ++ +R+++  GL  RL +  IA G   +DY  RL+FEL+ I 
Sbjct: 288  YFLPAYPVPE----DETLDSWIRSQSREGLAARLEKSPIAPGKTRKDYVDRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIPN     +                  +    +  V  L++++++LE L R
Sbjct: 464  GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLTR 523

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PLS+  P++ +   D     PVTQF+   +E  GL+KFDFLGL+TL
Sbjct: 524  NAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 583

Query: 580  TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  +  R        VD++ IP DD  TY  +  +  T  +FQ ESSGMR+ L+
Sbjct: 584  TIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQE
Sbjct: 644  DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQE 703

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L+
Sbjct: 704  QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 763

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R   
Sbjct: 764  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823

Query: 814  IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871
            + + PP VN     F+    + I Y L AIKGVG      I+E      P+ +L DFC+R
Sbjct: 824  LTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 883

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F    
Sbjct: 884  VGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943

Query: 932  GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
             +    ++ L +            E+  LGFY SGHP D ++  +R++           +
Sbjct: 944  PSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVRELVGCDLGALEKIL 1003

Query: 991  RGNN------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                                    LA  V+  ++    KG    +V   +     E + F
Sbjct: 1004 ASQQRGGGGGDGEKRAWRPEVSAILAGQVIGVRR----KGDSQVFVQLEDGRGRVECSAF 1059


>gi|71276388|ref|ZP_00652665.1| DNA polymerase III alpha subunit [Xylella fastidiosa Dixon]
 gi|71162850|gb|EAO12575.1| DNA polymerase III alpha subunit [Xylella fastidiosa Dixon]
          Length = 1193

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1078 (37%), Positives = 622/1078 (57%), Gaps = 74/1078 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             + SFVHL +H+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  L I   ++                + LL     GY  L
Sbjct: 62   FALIKFYKAAETVGIKPISGADLLIAEPEHTPWG------------MTLLCRDHTGYLNL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
             +L+SR +L     +  V +   W+++   + L  L G     + + F    + +AE++L
Sbjct: 110  SQLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIG-RHSLVGQLFAKGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R     +       +Q+A    +P++A+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + +A   ++    RPR  +   YL++  EM ++F+D+P+AL+NT  +A+RC+  +++  
Sbjct: 228  RVCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +         +  ++ +R ++  GLE RL +  +A G   +DY  RL+FEL+ I 
Sbjct: 288  YFLPNYPVPN----DETLDSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M FSGYFLIVADFIQW K+  IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC +RRDEVI YV  KYG ERV+QIIT+G++ AKA +RDVGR L  PY
Sbjct: 404  PERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADD------SRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIP+     +       +      +   +   A+  V  LL ++++LE L R
Sbjct: 464  GLVDSVAKLIPSTLGITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTR 523

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PL++  P++ +   +     PVTQF+   +E+ GL+KFDFLGL+TL
Sbjct: 524  NAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTL 583

Query: 580  TLLQKSLDFLAQRGVKVDLSLI-----PFDDHETY-HLLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  + +R  +  +  +     P DD  TY  +  +  T  +FQ ESSGMR+ L+
Sbjct: 584  TIIDWAVKAINKRHARACIDPVDITALPLDDLPTYKDIFASGNTSAVFQFESSGMRRLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +  RK+G ++ +   P    +LK+T G+++YQE
Sbjct: 644  DARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQE 703

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K G+    A  IF+L+
Sbjct: 704  QVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLM 763

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  +AR  N
Sbjct: 764  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNLN 823

Query: 814  IQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
            ++++ P++N     F+    + I Y L AIKGVG +    I++      P+ SL DFC+R
Sbjct: 824  LKVLRPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCTR 883

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-E 930
            V S KLNRR LE+++ AGALD  G +R  ++  L  + K  + + + R +   ++F + +
Sbjct: 884  VTSAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNAD 943

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE----- 985
             GT + ++ L +      +     E+  LG YFSGHP D Y+  ++++            
Sbjct: 944  PGTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALER 1003

Query: 986  -SVATIRGN----------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +  RGN          N  LA +VVS ++    KG    +V   +     E + F
Sbjct: 1004 ILSSQQRGNGEKRTWQPEVNTILAGLVVSVRR----KGDSQVFVQLEDGRGRIECSAF 1057


>gi|78047019|ref|YP_363194.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv.
            vesicatoria str. 85-10]
 gi|78035449|emb|CAJ23094.1| DNA polymerase III alpha chain [Xanthomonas campestris pv.
            vesicatoria str. 85-10]
          Length = 1196

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1082 (38%), Positives = 602/1082 (55%), Gaps = 78/1082 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 110  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRDSLAGRLFNEGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   Y+K+  EM ++F+D+P+A++NT  +A+RC+  +++  
Sbjct: 228  RVCISSGRVLDDPKRPREYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   E     +  ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I 
Sbjct: 288  YFLPAYPVPE----DETLDSWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIPN     +                  +    +  V  L++++++LE L R
Sbjct: 464  GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLTR 523

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PLS+  P++ +   D     PVTQF+   +E  GL+KFDFLGL+TL
Sbjct: 524  NAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 583

Query: 580  TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  +  R        VD++ IP DD  TY  +  +  T  +FQ ESSGMR+ L+
Sbjct: 584  TIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQE
Sbjct: 644  DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQE 703

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L+
Sbjct: 704  QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 763

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R   
Sbjct: 764  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823

Query: 814  IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871
            + + PP VN     F+    + I Y L AIKGVG      I+E      P+ +L DFC+R
Sbjct: 824  LTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 883

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V + +LNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F    
Sbjct: 884  VGTARLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943

Query: 932  GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
             +    ++ L +            E+  LGFY SGHP D ++  +R++           +
Sbjct: 944  PSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVRELVGCDLGALEKIL 1003

Query: 991  RGNN--------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                                      LA  VV  ++    KG    +V   +     E +
Sbjct: 1004 ASQQRGGGGGGGDGEKRAWRPEVSAILAGQVVGVRR----KGDSQVFVQLEDGRGRVECS 1059

Query: 1031 FF 1032
             F
Sbjct: 1060 AF 1061


>gi|15827612|ref|NP_301875.1| DNA polymerase III subunit alpha [Mycobacterium leprae TN]
 gi|221230089|ref|YP_002503505.1| DNA polymerase III subunit alpha [Mycobacterium leprae Br4923]
 gi|14194699|sp|Q9X7F0|DPO3A_MYCLE RecName: Full=DNA polymerase III subunit alpha
 gi|4539136|emb|CAB39586.1| putative DNA polymerase III alpha chain [Mycobacterium leprae]
 gi|13093163|emb|CAC31588.1| DNA polymerase III, [alpha] subunit [Mycobacterium leprae]
 gi|219933196|emb|CAR71302.1| DNA polymerase III, [alpha] subunit [Mycobacterium leprae Br4923]
          Length = 1177

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/1061 (30%), Positives = 521/1061 (49%), Gaps = 41/1061 (3%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
               SFVHL  H+ YS+L+GA  +  +  ++   Q PA+ +TD  N+F A EF   A  AG
Sbjct: 2    NQSSFVHLHNHTEYSMLDGAAKITPMFAEVERLQMPAVGMTDHGNMFGASEFYNTAIKAG 61

Query: 67   IQPIIGCQLDIDMQDNLK----------MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            I+PIIG +  I                       +       + ++   A G + L +L 
Sbjct: 62   IKPIIGVEAYIAPGSRFDTRRITWGDPSQKADDVSAGGAYTHLTMVAENAAGLRNLFKLS 121

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S      Q  +  R+    + E   EG+I+ TG  SG +         + A +    +++
Sbjct: 122  SLASFEGQLSKWSRMDAELIGEY-AEGIIVTTGCPSGEVQTRLRLGHDREALESAAKWRE 180

Query: 177  LFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            + G D  ++ L  H    ++     ++ +     +P +ATN+  +++ +    H+ L+ V
Sbjct: 181  IVGPDNYFLELMDHGLSIEQRVREGLLNIGRKLNIPPLATNDCHYVTRDAVHNHEALLCV 240

Query: 235  AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                 +S  +R +   D Y    +  +    D          +                 
Sbjct: 241  QTGKTLSDPNRFKFHGDGYYLKSAAEMRQLWDDEVPGACDSTLLIAERVQSYADVWEPRN 300

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
             +      +  ++ + LR++  AGL+ R   G          Y +R  +E++VI    F 
Sbjct: 301  RMPVFPVPVGHDQASWLRHEVDAGLKRRFPDG------PPNGYVERAAYEIDVICDKGFP 354

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFLIVAD +  A+   I VGPGRGS AGS+ AYAL ITDIDP+   LLFERFLNP+R S
Sbjct: 355  AYFLIVADLVNHARSVGIRVGPGRGSAAGSLAAYALGITDIDPIPHGLLFERFLNPERTS 414

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMPYSQV 472
            MPD DIDF   RR E++RY  +K+GH+RVAQ+ITFG+++ KAAL+D  R    Q  ++  
Sbjct: 415  MPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAMA 474

Query: 473  DRLCKL-IPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            DR+ K   P   A  +          +   + +  R     D  V  + + ++ LEGL R
Sbjct: 475  DRITKALPPAIMAKDIPLSGITDPAHERFKEAAEVRSLIETDSDVRIIYQTARGLEGLIR 534

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
            +A  HA  +++   PL++ +P+++  +    +T ++    E  GL+K DFLGL+ LT++ 
Sbjct: 535  NAGVHACAVILSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIG 594

Query: 584  KSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             +++ +   RG+ +DL  +P DD  TY LL    TLG+FQL+   MR  L  MQP   ED
Sbjct: 595  DAIENIKTNRGIDLDLESVPLDDQATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFED 654

Query: 643  IIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQVM 696
            I+A+++LYRPGP+       Y +RKN ++ I  IHP ++      L ET G+I+YQEQ+M
Sbjct: 655  IVAVLALYRPGPMGMNAHNDYADRKNNRQVIKPIHPELEEPLREILAETYGLIVYQEQIM 714

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            +IAQ ++GYSL+ AD+LR+AMGKK +E ++K+ E F  G   NG S      +++++  F
Sbjct: 715  RIAQKVAGYSLARADILRKAMGKKKREVLEKEFEGFSEGMQANGFSVHAIKALWDIILPF 774

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            ADY FNKSHAA Y +ISY TA++K ++  E++A  +T   D+ +K   +  D R+F I +
Sbjct: 775  ADYAFNKSHAAGYGLISYWTAYLKANFAGEYMAGLLTSVGDDKDKAAVYLADCRKFGITV 834

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSK 875
            +PP VN   +DF      I Y L A++ VG      +++   A   F    D+ +++D  
Sbjct: 835  LPPDVNESVLDFASVGADIRYGLGAVRNVGANVVGSLIKTRNAKGKFADFSDYLNKIDIT 894

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
              N++V ESL+ AGA D  G+SR  L     +        +K       ++F    G   
Sbjct: 895  SCNKKVTESLIKAGAFDSLGHSRKGLFLVHADAVDSVLGTKKAEAIGQFDLFGGTDGGTD 954

Query: 936  DKITLE-KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRG 992
               T++          +   E+ +LG Y SGHPL+    +L           +       
Sbjct: 955  AVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPTILDGGVSND 1014

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +R+  ++ +  ++  + G         +     E  FFP
Sbjct: 1015 TQVRVGGILAAVNRRVNKNGIPWASAQLDDLTGGIEVMFFP 1055


>gi|261381235|ref|ZP_05985808.1| DNA polymerase III, alpha subunit [Neisseria subflava NJ9703]
 gi|284795857|gb|EFC51204.1| DNA polymerase III, alpha subunit [Neisseria subflava NJ9703]
          Length = 1144

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/1038 (38%), Positives = 585/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+++G + +  ++ K      PA+ I+D  N F  ++F +    
Sbjct: 1    MTE-PTYIPLRLHTEFSIIDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+PI    + I                      +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSSDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPSQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357
              +    ++ L   +  GL+ R+ Q    +   A+   +Y++RLDFELN+I +MKF GYF
Sbjct: 290  LSL----DDYLVKLSNEGLQERMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L K
Sbjct: 406  FDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465

Query: 478  LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S  +A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLSLEKAMEAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  VDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L   S+ + S +  
Sbjct: 884  IEPNRAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VQLIDASMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   + ++              +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVHQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + +   E   
Sbjct: 998  -IAFVSLEDLSGLVEIMV 1014


>gi|195953981|ref|YP_002122271.1| DNA polymerase III, alpha subunit [Hydrogenobaculum sp. Y04AAS1]
 gi|195933593|gb|ACG58293.1| DNA polymerase III, alpha subunit [Hydrogenobaculum sp. Y04AAS1]
          Length = 1201

 Score =  695 bits (1793), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/1085 (36%), Positives = 577/1085 (53%), Gaps = 76/1085 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +H+ YSLL+GA+ + ++  K       A+AITD  NLF  + F ++  A GI+P
Sbjct: 3    DFVHLHLHTQYSLLDGAIKIKDLAKKAKEYGYKAVAITDHGNLFGTMSFYKEMKANGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            IIG +         +   +G            I+LL     G + L++L S  ++ +   
Sbjct: 63   IIGMEAYFTTGKRTEHKGKGSEDNITDRINHHIILLAKNDTGLKNLMKLSSIAFI-EGFY 121

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               RI    L++   EGLI LT    G         + ++A   +  FK +FGD LY+ L
Sbjct: 122  YKPRIDYEVLEQ-HAEGLIALTACLKGVPTFYAAQGNEEMAYNWVKKFKDIFGDDLYLEL 180

Query: 187  Q-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q  H          ++ +A  + +   ATN+  +L EED  AH+VLMA+     + +   
Sbjct: 181  QSNHIPAQETANKTLIDIAKRYNVKFAATNDCHYLLEEDLRAHNVLMAIQMKKTLQELGE 240

Query: 246  PRVTPDHYLKNRSEMVS------IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                    +   S           +S+  +AL NTVEI+ + +  L +      +F E  
Sbjct: 241  DAFGHYDGMHFASYEEMVKKFEGKWSEWEKALLNTVEISEKVADSLSIFEDKSYKFPEFF 300

Query: 300  -CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              DDI     + LRN AV GL+ R+ +  I+K    ++Y  RL++EL VI  M F  YFL
Sbjct: 301  KGDDINVNISSYLRNLAVEGLKSRIQKSQISKNIPEKEYWDRLNYELEVIQNMGFDSYFL 360

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV+DFI W+K NNIPVGPGRGS AGS+ A+AL ITD+DPL+  L+FERFLNP+R+SMPD 
Sbjct: 361  IVSDFINWSKSNNIPVGPGRGSAAGSLVAFALNITDVDPLKHGLIFERFLNPERISMPDI 420

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DFC D RD+VI YV+ KYG + VAQIIT+ +++AK  LRDV RA+ M Y   D L KL
Sbjct: 421  DVDFCMDNRDKVIEYVKEKYGKDSVAQIITYNTMKAKQTLRDVARAMGMAYKDADVLAKL 480

Query: 479  IP--NDPAHPVSLQAIADDS-------------------RFREARLADPSVDRLLEISQK 517
            IP  N     +SL+ +                       +FR+    DP +  L+EIS K
Sbjct: 481  IPQGNVQGTWLSLEEMYITPIEELMERYGHRGDIEDNVKKFRDLAKKDPQIKELVEISIK 540

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRD----VRSDLPVTQFNMKWIEKAGLIKFDF 573
            LEGL RH S HAAGIVI  +PL +L P+Y D      +    TQ++M  +E+ GL+K DF
Sbjct: 541  LEGLTRHTSLHAAGIVIAPKPLIELAPLYLDKSVKDDTGNIATQYDMAHLEELGLVKMDF 600

Query: 574  LGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGLKTLT L K  + + Q   V +D   + F++ E Y  L T  T+G+FQLES GMR+ +
Sbjct: 601  LGLKTLTELWKMKELVKQNKGVDIDFLSLDFNNKEIYEFLATGETIGVFQLESKGMRELI 660

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG--KEKIVSIHPLIDPMLKETQGVII 690
            + ++PD  EDI+A ++LYRPGPI + +V         KEK+V     ++ +LKET G+I+
Sbjct: 661  KRLKPDRFEDIVAALALYRPGPIKSGMVDKFINRKLGKEKVVYEFEELEEVLKETYGLIV 720

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQ+M I+ +L+G+++ EAD LR+A+GKK  + M K K+ FI  + + G  K     ++
Sbjct: 721  YQEQIMFISNILAGFTMGEADNLRKAIGKKKADLMAKIKDDFIRRSCERGYPKDKIEKLW 780

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
              + +FA Y FNKSH+ AY  IS+ TA++K +YP EF A   + E  + + I    +DA+
Sbjct: 781  SEIEEFASYSFNKSHSVAYGYISFWTAYVKLYYPDEFYAVKFSTENSDKKFI-NLLKDAK 839

Query: 811  QFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHI--MEASADKPFDSLED 867
             F I+++PP VN   VDFK+     I + L  IKGVG  TARHI  M+    + F S +D
Sbjct: 840  SFGIKVLPPDVNKSDVDFKIEVPRHIRFGLGRIKGVGEDTARHIKSMQEKIGRDFLSFQD 899

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCF-----GYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
            F    D++K+N++VLE+L  AGA D         +R   L  L          +   +  
Sbjct: 900  FTKNTDNRKVNKKVLEALSKAGAFDSLIEKSGYKNREDFLSRL-------LNSQDISSIA 952

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG-IK 981
              ++F  +    +     E+    +S    + E+ VLGFY SGHPLD Y  IL     I 
Sbjct: 953  QRSLFGIKASKST-----EQMEQSSSIDILKLEKEVLGFYISGHPLDKYSWILSHNKDIT 1007

Query: 982  GYEES---------VATIRGNNI----RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
              E+          + +  G N      +  ++   Q KKT+ GS +      +     E
Sbjct: 1008 NIEDIDFDNMPNQAIDSEAGQNASAEYTIVGVISDLQIKKTKNGSYMAIFNLVDKTDIVE 1067

Query: 1029 ANFFP 1033
               FP
Sbjct: 1068 VVVFP 1072


>gi|298372024|ref|ZP_06982014.1| DNA polymerase III, alpha subunit [Bacteroidetes oral taxon 274 str.
            F0058]
 gi|298274928|gb|EFI16479.1| DNA polymerase III, alpha subunit [Bacteroidetes oral taxon 274 str.
            F0058]
          Length = 1320

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1159 (30%), Positives = 573/1159 (49%), Gaps = 146/1159 (12%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66
            SFVHL VHSS+S+L+G   + +++DK    + P IA+TD  +++   EF           
Sbjct: 2    SFVHLHVHSSFSVLDGMSRIEDLVDKAIKYEMPGIALTDHGSMYGIKEFLDYVKKVKKSA 61

Query: 67   -------------------IQPIIGCQLDIDMQD----------NLKMTNQGKTPFPTVP 97
                                +PI+G +     +            L+  N+      +  
Sbjct: 62   KEQLQKGKISEEECARIQSFKPILGVEAYCAARTLYDKDKNKKLFLERKNKDIIVDMSGF 121

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             ++LL    +GYQ L +LVS  + +D   Q  RI  + L+   +EGLI+ +    G I +
Sbjct: 122  HLLLLAKNKKGYQNLCKLVSISW-VDGFYQKPRIDKNVLKTY-SEGLIVSSACLGGEIPQ 179

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG-----------YDRYRESQVVQLAYT 206
                N    AE+ +  F+ +FGD  Y+ +Q H+              +    ++ +LA  
Sbjct: 180  YILNNEIDKAEETINWFRSVFGDDFYLEVQLHKPTRPEISNETYLNQQRVNEEIYRLARK 239

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
                +VATN+  F+  E  +AH+ L+ ++    +S  DR   T + Y+K   +M  +F++
Sbjct: 240  TGTKVVATNDIHFVEAEHADAHERLVCLSTGKKISDTDRMLYTKEEYMKTPEQMRELFAE 299

Query: 267  LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE-------------------- 306
             PE ++NT+E+  +        +PI+P+F   E     +                     
Sbjct: 300  HPEVIDNTLEVLSKVELFSLDSSPIMPKFDIPEEFGTVEGYRQQFTEQDLIAEFSRTAEN 359

Query: 307  --------------------------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
                                      E + L      G + R A             R+R
Sbjct: 360  KPLDEEQAAKRIAELGGVEKLYRIKLEADYLTKITYDGAKERYAD-------ITDQIRER 412

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            +DFELN I  M F GYFLIV DF+  A++ N+ VGPGRGS AGSV AY L IT+IDP ++
Sbjct: 413  IDFELNTIKSMGFPGYFLIVQDFVAAARQMNVWVGPGRGSAAGSVVAYCLKITNIDPFKY 472

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNPDR+S+PD DIDF  D   +V+ +V +KYG E VA II +G++  K A+ D
Sbjct: 473  DLLFERFLNPDRISLPDIDIDFDNDGLSQVLEWVTHKYGKECVAHIINYGTMATKLAITD 532

Query: 461  VGRALQMPYSQVDRLCKLIPNDP--------AHPVSLQA---IADDSRFREARLADPSVD 509
            VGR  ++P ++V+   K+IP+               +     +      +      P++ 
Sbjct: 533  VGRIQEIPLNEVNNFKKIIPDSLENYKDEKTGKTPKMNISNILKYSKEVQRWCKEKPAIA 592

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL-------PVTQFNMKW 562
             +++ + +LEG  R    HA GI+I    L+  VP+      D         VTQ++   
Sbjct: 593  EMMKYADQLEGTVRQTGVHACGIIIAPDDLTNFVPLSTAKEKDKSKKDTEVLVTQYDGHV 652

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            IE+ GLIK DFL LKTL+++++++  + + + + +D++ I ++D  T+ L     T+G+F
Sbjct: 653  IEQIGLIKMDFLALKTLSIMKETVANIKKSKNIDLDINNIDWNDKATFELFAQGNTIGVF 712

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            Q ES+GMR+ L  ++P  IED+IA+ +LYRPGP+D I  + +RK+G+  I    P+++  
Sbjct: 713  QFESTGMRKYLMQLKPTSIEDLIAMNALYRPGPMDYIPDFIDRKHGRMPITYDIPIMEQY 772

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            LK+T G+ +YQEQVM +++ L+G++  ++D LR+AMGKKIK  + + K +FI G   NG 
Sbjct: 773  LKDTYGITVYQEQVMLLSRQLAGFTRGQSDQLRKAMGKKIKAMLMELKPKFIDGGVGNGH 832

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
             + I   I+E   KFA Y FNKSH+  YAV++YQTA++KTHYP EF+AA++TL    + +
Sbjct: 833  DRNILEKIWEDWEKFASYAFNKSHSTCYAVLAYQTAYLKTHYPAEFMAANLTLNKGKITE 892

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-D 859
            + KF ++ +   I ++ P VN   + F V     I + L  IK VG  T   I+E    +
Sbjct: 893  VNKFMEECKIMKIPVLLPDVNESDMLFTVNTKGEIRFGLGGIKNVGEATVEGIIEERKNN 952

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS---LDNIQKYAQWV 915
              F S+ DF  RV+ K  N++ +ES   +GALD F    R    QS   ++N+ ++ +  
Sbjct: 953  GSFKSIFDFLERVNLKSCNKKAIESFALSGALDSFTDMKREDYFQSEETINNLMEWGRKA 1012

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            +  R++   ++F  E+   +      K    +   R  +E+ ++G Y S HPLD Y+ I+
Sbjct: 1013 QAGRSSLQNSLFGEEEFDHT-YPQFPKAEAWSDLKRLNSEKDLIGIYLSAHPLDEYRSII 1071

Query: 976  RKMGIKGYEES----------VATIRGNNIR------------LAAMVVSKQQKKTRKGS 1013
            +        E           + TI  N I             +  ++V    + ++KG+
Sbjct: 1072 QYGCSHSIAELKSIETELKQELDTIPNNEILSARIKARQVDFCVGGIIVHTSIQTSQKGN 1131

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            + G     +   + E   F
Sbjct: 1132 QYGIFVLEDYTDQIEFRLF 1150


>gi|260550635|ref|ZP_05824844.1| DNA polymerase subunit III alpha [Acinetobacter sp. RUH2624]
 gi|260406346|gb|EEW99829.1| DNA polymerase subunit III alpha [Acinetobacter sp. RUH2624]
          Length = 1186

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1038 (36%), Positives = 578/1038 (55%), Gaps = 46/1038 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + +++     D+ PA+A+TD +NL +A++F       GI+PI
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVKAAVKDEMPALALTDLSNLHAAVKFYNSCLKKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + ++                      LL  +  G++ L E+VSR ++  Q      
Sbjct: 63   LGSTIRLN---------------DAQHRATLLAMSDIGWKGLTEIVSRGFIEGQQLSIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E   + +I+L G     + +    ++ Q AE  L  + + FG+R+Y+ L R  
Sbjct: 108  VQKEWVLEQHQD-IIVLLG-QHSDVGQMLCSSNPQKAEPLLEEWIEKFGNRVYLALTRTD 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     +  +LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   RPR  
Sbjct: 166  RAGEEDFIQEAAKLAAKYNIGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADDRRPRLY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ + K   EM+ +FSD+P A+ENT  IA+RC+  L++    LP +   +   I    +
Sbjct: 226  SPEQHFKTSDEMIELFSDIPSAIENTYHIAKRCNVSLKLGTYFLPEYPIPDGFTI----D 281

Query: 309  NELRNKAVAGLEV------RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE        + +         + Y +R+D+E+ +I +M F GYFLIV D
Sbjct: 282  TYFEHLSKEGLEERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ K++P  
Sbjct: 402  CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537
            P       AI  + + ++      + D      + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGVDLATAIEMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPG 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +      
Sbjct: 522  KITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRGNDP 581

Query: 598  LS--LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            L+   +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP+
Sbjct: 582  LNISHVPLDDPKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGPM 641

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +   +        +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L  AD+LRR
Sbjct: 642  DLIPDFI-HRMHGGDFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLRR 700

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM KQ++ F+ GA + GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y 
Sbjct: 701  AMGKKKPEEMVKQRQIFLEGAGQKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAYH 760

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K HYP EF+AA M+ EM N + +     D R   ++++PPSVN     F   D++ 
Sbjct: 761  TAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYHFHASDDKT 820

Query: 835  IYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y L AIKGVG    + +++      P+  L DFC R+D KK+N+R LE+L+ AGALDC
Sbjct: 821  IVYGLGAIKGVGEQAMQSVIDSRRQQGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDC 880

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
             G  R  L+  L    + A+    NR +   ++F   +     +   +     +  VR +
Sbjct: 881  LGIERSSLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRLK 938

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+          +
Sbjct: 939  GEKDTLGLYLTGHPIDVYRQELKAFIPAKLNEITATRRGVTTVYAGLVLDVANFP----N 994

Query: 1014 RIGWVTFSEPAKEYEANF 1031
            R+  V   +     E + 
Sbjct: 995  RVVIV-LDDGTARIEVSC 1011


>gi|50085210|ref|YP_046720.1| DNA polymerase III alpha [Acinetobacter sp. ADP1]
 gi|49531186|emb|CAG68898.1| DNA polymerase III, alpha chain [Acinetobacter sp. ADP1]
          Length = 1187

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1039 (36%), Positives = 583/1039 (56%), Gaps = 47/1039 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ +S+ E  + + +++     D  PA+A+TD +NL +A++F       GI+PI
Sbjct: 3    FVHLGIHTEFSITESIVRIPDLIKAAVQDDMPALALTDLSNLHAAVKFYTSCLKKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + ++  ++                I LL  T +G++ L E+VSR ++  Q      
Sbjct: 63   LGSVVRLNDPEH---------------RITLLAMTNDGWKGLTEIVSRGHIEGQQLSIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E   + +I+L G     + +    ++ Q AE  L  +++ FG+R+Y+ L R  
Sbjct: 108  VQKEWILEQHQD-IIVLLG-QHSDVGKMLCSSNPQKAEPLLQAWQEKFGNRVYIALTRTQ 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     + V+LA  + + +VA N+  F+  +D++AH+  + +A   V++   RPR  
Sbjct: 166  RAGEEDYMVEAVKLAAKYNIGVVAHNDVHFIERDDFDAHEARVCIADGYVLADHRRPRIY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            + + Y K  SEM  +FSD+P A+ENT  IA+RC+  LQ+    LP +   +   I    +
Sbjct: 226  SSEQYFKTASEMEELFSDIPSAIENTYYIAQRCNVSLQLGTYFLPDYPIPDGFTI----D 281

Query: 309  NELRNKAVAGLEVRLAQGAI------AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE RL                 + Y +R+++E+ +I +M F GYFLIV D
Sbjct: 282  TYFEHLSKEGLEERLNHLYPIETRDQDWPEIRKPYDERIEYEVGIILKMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWAKSNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ K++P  
Sbjct: 402  CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537
            P      QAI  + + ++      + D      + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGVDLKQAIEMEPQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIAPG 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596
             ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +R     
Sbjct: 522  KITDYSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIQSEI 581

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              D++ +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  PLDIANVPLDDKDAYLVFADANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +   +    +   +HPL++ +L+ T G+++YQEQVMQ AQ  +GY+L  AD+LR
Sbjct: 642  MDLIPDFI-HRMHGGEFEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ FI GA++  I +  A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRQIFIKGAAEKEIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TAW+K HYP EF+AA ++ EM N + I     D R   ++++PPSVN     F   D R
Sbjct: 761  HTAWLKAHYPAEFMAAVLSSEMQNTDSIVFLIDDCRNNALEVLPPSVNMSLYHFHASDER 820

Query: 835  -IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L AIKGVG    + ++++   + P+  L DFC R+D KK+N+R LE+L+ AGALD
Sbjct: 821  TIVYGLGAIKGVGEQAMQSVIDSRIKNGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C    R  L+  L    + A+   +NR     ++F   +     +   +     +  VR 
Sbjct: 881  CLQIERSSLMAQLPEAVQAAEQARQNRETGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y +GHP+DVY+P L+        E   T RG     A +V+          
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRPELKSFIPAKLNEVTPTRRGVTTVFAGLVLDVANFP---- 994

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
            +R+   T  +     E + 
Sbjct: 995  NRMVI-TLDDGTARIEVSC 1012


>gi|212550708|ref|YP_002309025.1| DNA polymerase III alpha subunit [Candidatus Azobacteroides
            pseudotrichonymphae genomovar. CFP2]
 gi|212548946|dbj|BAG83614.1| DNA polymerase III alpha subunit [Candidatus Azobacteroides
            pseudotrichonymphae genomovar. CFP2]
          Length = 1229

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1100 (33%), Positives = 570/1100 (51%), Gaps = 83/1100 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            FVHL VHS YS L+G  S+  ++DK    +  A+A+TD  N+F   EF            
Sbjct: 4    FVHLHVHSYYSQLDGMSSITGLVDKACHYRMKALALTDHGNMFGIKEFYDCIKKKNKNLH 63

Query: 67   ----IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                I+PI+G +  +  +     + +  +       ++LL    +GY+ L +LVS  ++ 
Sbjct: 64   KDQKIKPILGVEAYVARRTRFDKSKKVDS---NGWHLILLAKNKQGYKNLCKLVSISWI- 119

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF-FNSSQVAEKRLLTFKKLFGDR 181
            +      RI    L++  +EGLI  +    G I +      ++Q AE+ +L FKK+F + 
Sbjct: 120  EGFYYRPRIDKECLEQY-SEGLIATSACLGGEIPQKILERENTQEAEQAILWFKKVFEND 178

Query: 182  LYVNLQRHRGYDRY-----------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             Y+ LQRH+                    +++LA T +  ++ TN+  F+ EE  EAHD 
Sbjct: 179  FYLELQRHQTNKENSDQTVFLKQTVVNQSLLKLAKTTDTKIICTNDVHFIEEEHAEAHDR 238

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            L+ +     ++   R R T   + K+  EM +IFSDLPE+L NTVEIA +          
Sbjct: 239  LICLGTGKYLNDPKRMRYTKQEWFKSIEEMNAIFSDLPESLGNTVEIADKIEPYNIDLET 298

Query: 291  ILPRFIEKECDDIQKEE-----ENELRNKAVA----------GLEVRLAQGAIAK----- 330
            ++P F   E    ++       E  LR +             G    +     A      
Sbjct: 299  VMPIFSIPESFATEETYCTKYTEETLRQEFNKEDKSRFDKLGGYNKVIRIKLEADYLKEL 358

Query: 331  ----------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                              +RL+FEL  +  M F GYFLIV DFIQ A+   + VGPGRGS
Sbjct: 359  TLQKAKNRYGNPIPNAILERLEFELETMKTMGFPGYFLIVQDFIQAARNMGVSVGPGRGS 418

Query: 381  GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
             AGSV AY L ITDIDPL++ LLFERFLNPDR+SMPD DIDF  D R +++R+V  KYG 
Sbjct: 419  VAGSVVAYCLEITDIDPLKYDLLFERFLNPDRISMPDIDIDFDDDGRMDIVRWVTKKYGK 478

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS--------LQAI 492
            E+VA I+T+G++  K+++RDVGR   +  ++ ++L KLIP+      S           I
Sbjct: 479  EKVAHIVTYGTMATKSSIRDVGRVQGLSMTETEKLTKLIPDRLPEDESGQIPKINIKNCI 538

Query: 493  ADDSRFRE-ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM----YR 547
               S  RE     + ++   L+ ++ LEG  R    HA GI+IG   L+  +P+     +
Sbjct: 539  KYISELREVRYSNNKNLSDTLKYAEMLEGTVRQTGIHACGIIIGADDLTNFLPLATVKEK 598

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D+ VTQ+    IE  GLIK DFLGLKTL++++ ++  + + +   +D++ IP DD 
Sbjct: 599  RTNEDILVTQYEGSMIESIGLIKMDFLGLKTLSIIKNTIANVKRSKNKTIDINHIPNDDK 658

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             TY L +   T+G+FQ ESSGM++ L  ++P   ED+IA+ +LYRPGP+  I  + NRK+
Sbjct: 659  LTYELYSRGQTIGVFQFESSGMQKYLRELRPTQFEDLIAMNALYRPGPMAYIPDFINRKH 718

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             K  I+   P ++  LKET G+ +YQEQVM +++ L+G+S  ++D LR+AMGKK+K +M+
Sbjct: 719  EKNSIIYDFPEMESRLKETYGITVYQEQVMLLSRDLAGFSRGQSDELRKAMGKKLKNKME 778

Query: 727  KQKERFISGASKNGI-SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +  ++FI GA+KNG   K     I+    KFA+Y FNKSHA  Y+ ISYQTA++K HYP 
Sbjct: 779  QFHDKFIQGATKNGFGPKKKLEKIWNDWTKFAEYAFNKSHATCYSWISYQTAYLKVHYPA 838

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844
            EFLAA++T   DN+ +I KF  + R   I+++ P +N   ++F V  +  I + L  IKG
Sbjct: 839  EFLAANLTHNRDNIVEITKFIDECRAMGIRVLGPDINESELNFTVNKEGHIRFGLGGIKG 898

Query: 845  VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL 902
            VG      I++    +  F ++ DF  R++    N++ +ESL  +G  D F G  R Q  
Sbjct: 899  VGKNAVETIVKEREENGAFKNIFDFIERINLTACNKKSIESLSLSGTFDSFIGIKREQFF 958

Query: 903  QS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
                     ++ + +Y    + ++ +   ++F +       K+ +      N+  R   E
Sbjct: 959  AENSNGETFIETLIRYGNKFQLDKNSDIGSLFGNSDPMGIAKLEIPLKDEWNNIERLNKE 1018

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR---GNNIRLAAMVVSKQQKKTRKG 1012
            + +LG Y S HPLD Y  IL+ +      +         G  + L  MV + ++  T+ G
Sbjct: 1019 KDLLGVYVSSHPLDEYYLILKYICTLRINDFEKAKITQCGQELILGGMVTNYREGHTKAG 1078

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
            S  G +   +     E   F
Sbjct: 1079 SSFGILKLEDFTGSREIPLF 1098


>gi|302544658|ref|ZP_07297000.1| DNA polymerase III, alpha subunit [Streptomyces hygroscopicus ATCC
            53653]
 gi|302462276|gb|EFL25369.1| DNA polymerase III, alpha subunit [Streptomyces himastatinicus ATCC
            53653]
          Length = 1180

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/1072 (31%), Positives = 527/1072 (49%), Gaps = 51/1072 (4%)

Query: 5    LEKSPS--FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            + +  +  F HL VH+ YSLL+GA  L ++           IA+TD  NL  A +F Q+A
Sbjct: 1    MPQPATRPFTHLHVHTQYSLLDGAARLKDMFKACQQMGMSHIAMTDHGNLHGAYDFFQQA 60

Query: 63   CAAGIQPIIGCQLDIDMQDNLKM----------TNQGKTPFPTVPSIVLLVSTAEGYQRL 112
             AA I PIIG +  +  +                    +         +  +   G   L
Sbjct: 61   TAAAITPIIGIEAYVAPESRRSKRKVRWGQPHQKRDDVSGSGGYTHKTIWAADRTGLHNL 120

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
              L S  Y     ++  R+    + E    GLI  TG  SG +           A K   
Sbjct: 121  FRLSSDAYAHGWLQKWPRMDKEVIAE-HAAGLIASTGCPSGEVQTRLRLGQFDEALKAAS 179

Query: 173  TFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             ++ +FG DR ++ L  H    +R     ++++     +P + TN+S +    + +AHD 
Sbjct: 180  AYQDIFGRDRYFLELMDHGIEIERRVRDGLLEVGRKLGIPPLVTNDSHYTYAHESQAHDA 239

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            L+ +     ++  DR R     Y    ++ +    D  +A +         +  + V   
Sbjct: 240  LLCIQTGKSLAVADRFRFDGTGYYLKSADEM-YAIDSSDAWQEGCRNTLLVAEQVDVTGW 298

Query: 291  ILPRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
               R +    D      E    R +   G+  R   G        +D  +   +E++VI 
Sbjct: 299  FAKRDLMPRFDVPEGYTEVTWFREEVRRGMARRFPGGV------PEDREKLAAYEMDVII 352

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFL+VADFI WAK N I VGPGRGS AGS+ +YAL ITD+DP+   L+FERFLN
Sbjct: 353  QMGFPGYFLVVADFIMWAKNNGIAVGPGRGSAAGSIVSYALGITDLDPVEHGLIFERFLN 412

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPD DIDF + RR EVIRYV  KYG ++VA I T+G+++AK A++D  R L  PY
Sbjct: 413  PERVSMPDVDIDFDERRRGEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYPY 472

Query: 470  SQVDRLCKLIPND---PAHPVS------LQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            +  DR+ K +P D      P+S           +    R     DP V ++++ ++ +EG
Sbjct: 473  AMGDRITKAMPADVFGKGIPLSGITDPEHPRYGEAGEVRSMYEGDPDVKKVIDTARGVEG 532

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L R    HAAG+++   P+   VP++      + +TQ++    E  GL+K DFLGL+ LT
Sbjct: 533  LVRQMGVHAAGVIMSSEPVVDHVPVWVRHTDGVTITQWDYPTCESLGLLKMDFLGLRNLT 592

Query: 581  LLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++  ++  +   +G+ + L  +P DD  T+ LL    TLG+FQ + S MR  L  M+P  
Sbjct: 593  IMDDAVKLVRANKGIDLKLLDLPLDDPTTFALLGRGDTLGVFQFDGSAMRSLLRLMKPSH 652

Query: 640  IEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHP----LIDPMLKETQGVIIYQE 693
             EDI A+ +LYRPGP+     + Y  RKNG+++I  IHP     +  +L  T G+++YQE
Sbjct: 653  FEDITAVTALYRPGPMGMNSHINYALRKNGQQEITPIHPGVEDALKEVLDITYGLVVYQE 712

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QV + AQ+L+GYSL +AD+LRRAMGKK +E +DK+   F  G    G S      ++++L
Sbjct: 713  QVQKAAQVLAGYSLGQADLLRRAMGKKKQEVLDKEFIPFRDGCRARGYSDDAVQAVWDVL 772

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y +NK+HAAAYA++SY TA++K ++P E++AA +T   D+ +K   +  + R+  
Sbjct: 773  VPFAGYAYNKAHAAAYALVSYWTAYLKANFPAEYMAALLTSVRDDKDKSAVYLNECRKMG 832

Query: 814  IQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSR 871
            I+++PP VN    DF   GD+ I + L A++ VG      I+    A   + S  DF  +
Sbjct: 833  IKVLPPDVNESEADFTPRGDDTIVFGLTAVRNVGQNVVDSIIRRRRAAGRYASFPDFLDK 892

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V++   N+R +ESL+ AG  D  G++R  L    + +      V++       ++F    
Sbjct: 893  VEAVACNKRTIESLIKAGGFDALGHTRKGLTARYEPMVDTVVAVKRKEAEGQFDLFGGGY 952

Query: 932  GTFSDKITLEKF--------SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            G  S                     +     E+ +LG Y S HPL   + +L        
Sbjct: 953  GDGSGDGDSPALGLDVEFPDDEWEKAYLLAQEREMLGLYVSDHPLFGVEHLLSDRADAAI 1012

Query: 984  EESV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +        G  + +  +V   Q+K T++G+     T  + A   +  FFP
Sbjct: 1013 AQLTGGEHADGAIVTIGGIVSGLQRKMTKQGNAWAIATVEDLAGSLDCLFFP 1064


>gi|257453752|ref|ZP_05619033.1| DNA polymerase III subunit alpha [Enhydrobacter aerosaccus SK60]
 gi|257448844|gb|EEV23806.1| DNA polymerase III subunit alpha [Enhydrobacter aerosaccus SK60]
          Length = 1189

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/1059 (36%), Positives = 601/1059 (56%), Gaps = 65/1059 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVH  +H+ +S+ +  + +  ++    AD Q A+AI+D +NL++ ++F +    AGI+P
Sbjct: 2    AFVHFGIHTEFSITDSIVRIKALVKAAKADNQLALAISDLSNLYATVKFYKACLDAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ ++                    + LL S   GY+ L  +VS+ ++  Q     
Sbjct: 62   IIGSEVWLENDSTT---------------VTLLASNQVGYKNLTNIVSKGFVDGQVMGKP 106

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I   W+ E  +EG+I+L       + +A      + A+  L  ++  F DR+Y  ++R 
Sbjct: 107  IIQRDWIFER-SEGVIVLF-TEKSDVGQAMLSAHPEKADSLLQQWQTTFADRVYFAIKRT 164

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R  +     Q ++++   ++P++A N+  FL+E+D+EAH+  + +A+S V++  +RPR 
Sbjct: 165  QRANEDRFIEQAIRMSNAFDVPIIAHNDVRFLTEDDFEAHEARVCIANSQVLADPNRPRD 224

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +P+ YLK + +M ++FSD+P  ++NT+++A+RC+ I+ +    LP F   E D I    
Sbjct: 225  YSPEQYLKTQDKMTALFSDMPAVIDNTLDLAKRCNVIIHMGHHDLPEFPIPEGDTI---- 280

Query: 308  ENELRNKAVAGLEVRLAQGAI------AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            E   R  A  GLE RL +         +     + Y +RL+FEL  I  M F GYFLIV 
Sbjct: 281  ETFFRRTAQEGLEKRLEKLYPIEKRDDSWAEKRKPYDERLEFELTTILNMGFPGYFLIVM 340

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+W+K N++PVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPDFD+D
Sbjct: 341  DFIRWSKANDVPVGPGRGSGAGSLVAYSLNITDLDPLEYDLLFERFLNPERVSMPDFDVD 400

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC + RD VI YV  KYG E V+QIITFG++ AKA +RDV R     Y   D++ KLIP 
Sbjct: 401  FCIEGRDRVIDYVAQKYGREAVSQIITFGTMAAKAVVRDVARVQGKSYGLADKISKLIPK 460

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGD 536
             P   +   A+  + + ++      ++D      + E++ +LEG+ R    HA G++I  
Sbjct: 461  TPGISL-ADAVEAEPQLKDLLNNPDNMDYEDANEIWEMAVRLEGITRGVGKHAGGVLIAP 519

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---- 592
              ++    +Y D     PV+QF+   +E  GL+KFDFLGL+ LT++  ++  +  R    
Sbjct: 520  TKITDYSAIYCDE-EGHPVSQFDKDDVEAVGLVKFDFLGLRNLTVINAAVKNINARRAKE 578

Query: 593  -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                +DL  +P DD  TY LL    T  +FQLES+GM++ L  ++P  IED+IA+ +LYR
Sbjct: 579  QQPPLDLETLPLDDKPTYSLLQDAHTTAVFQLESTGMKKYLAKLKPTNIEDVIAMCALYR 638

Query: 652  PGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+D  +V  Y +RK+G+E+++  H  ++P+L+ T GVI+YQEQVMQI+Q ++GYSL  
Sbjct: 639  PGPLDAGMVDMYIDRKHGREEVIYDHDRLEPILENTYGVIVYQEQVMQISQAMAGYSLGG 698

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQ+  F+ GA   GI   +A  +F+L+ KFA YGFNKSH+AAY
Sbjct: 699  ADMLRRAMGKKKPEEMAKQRSIFVEGAIGQGIDDKLAGGVFDLMEKFAGYGFNKSHSAAY 758

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTPCVDF 828
             V++YQTA++K +YP EF+AA +T +M+N + +  F  D R+   +++  PSVN     F
Sbjct: 759  GVLAYQTAYLKHYYPAEFMAAVITSDMNNTDGVVFFINDCRENFGLKVENPSVNHSNWAF 818

Query: 829  K-VGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
              +    I Y L  IKGVG      I+EA  A   F  L DFC RVD++K+N+R LE+LV
Sbjct: 819  VPINPTTIVYGLGGIKGVGEGAVESIVEARNAGGEFTDLYDFCRRVDTRKVNKRTLEALV 878

Query: 887  FAGALDCFGYS-------------RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             AG  D F                R  LL  L    + A+    N +    ++F+  +  
Sbjct: 879  KAGCFDSFAPKLRPDLPADEAYHIRGALLAELPKAVQAAEQQRSNDSLGMIDLFSDIQEV 938

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
             +    L +  V   + R + E+  LG Y +GHP+D Y+  L++   K   +   T  G 
Sbjct: 939  TAP-PPLPREPVWTDAERLKGEKDTLGLYLTGHPIDSYRDELKRYTPKTLGDLSETSYGE 997

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +  A +++       R       +T  +     E + +
Sbjct: 998  TVFFAGLILDVANFGNRS-----VITLDDGTGRIEVSCY 1031


>gi|237750345|ref|ZP_04580825.1| DNA polymerase subunit III [Helicobacter bilis ATCC 43879]
 gi|229373875|gb|EEO24266.1| DNA polymerase subunit III [Helicobacter bilis ATCC 43879]
          Length = 1268

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1077 (34%), Positives = 591/1077 (54%), Gaps = 65/1077 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  L+ +  +I      ++A+TD  N+F A+EF +    AGI+PI
Sbjct: 9    FTHLHLHTEYSLLDGANKLDVLAKRIKELGMNSVAMTDHGNMFGAIEFYKIMKKAGIKPI 68

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  I  +++L      K+P      I L     EGY+ L+ L S+ ++     ++ R
Sbjct: 69   IGIEAYIHNKEDLG----DKSPNTPKFHICLYAKNEEGYKNLMYLSSQSFIQG-FYRTSR 123

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF-----------------FNSSQVAEKRLLT 173
            I    L+E  ++G+I  +   +G I                            A++ +  
Sbjct: 124  INKKILREY-SKGIICSSACLNGEISWNLNLSPYMDSKKRDKKIIMGAKGYDGAKEAIHE 182

Query: 174  FKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            ++ +FGD  Y+ + RH   D+   ++ +++L+      L+ATN++ + ++ED    +  M
Sbjct: 183  YQDIFGDDFYIEIMRHGIADQRFIDNDLLRLSLETGAKLIATNDAHYTNKEDSSMQEAAM 242

Query: 233  AVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
             +A +T ++   R R T  + Y+K+  +M+ +F D+PEA+ NT EIA +C   + +    
Sbjct: 243  MIAMATDINDPKRLRHTVQEFYIKSPKQMLDLFMDIPEAVFNTQEIADKCDLTIDLKDDK 302

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG------YHAQDYRQRLDFEL 345
             P          +  E   L  +  A       +  + K          + Y +RL  E+
Sbjct: 303  NPPTPPSFKFAKEYAENEGLTIQDEAEYFAYKCKQGLVKRLEQVEKDKHEIYHKRLQEEI 362

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            ++I +MKF GY LIV DFI +AK+N IPVGPGRGS AGS+ AY L ITD+DP++++LLFE
Sbjct: 363  DIITQMKFPGYMLIVWDFINYAKQNKIPVGPGRGSAAGSLVAYCLEITDVDPIKYNLLFE 422

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+SMPD D DFCQ RR E+  Y++ KYG   VAQ+ITFG + A+  +RDV R  
Sbjct: 423  RFLNPERISMPDIDTDFCQRRRPEMFEYMKAKYGEYNVAQVITFGKMLARGVIRDVARIY 482

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQA---------IADDSRFREARLADPSVDR------ 510
             M     DR  KLIP+     +                + + +E      +         
Sbjct: 483  GMSIPNADRFAKLIPSKLGITLKGYNKNGNFIEGAYELEPKIQELITEGDNDRDEKNRGL 542

Query: 511  ---LLEISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVR-SDLPVTQFNMKWIEK 565
               + E++ +LE L R+   HAA +V+  ++ L   VP+Y   R   + VTQ++MK++E 
Sbjct: 543  ARKVWEMALRLEKLNRNTGKHAAALVVDSEKELWHKVPLYVSERTKGVMVTQYSMKYLEP 602

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
              LIKFDFLGLKTLT++Q +LD +       ++LS +  +D + Y  L +  TLGIFQLE
Sbjct: 603  VDLIKFDFLGLKTLTVIQDALDIIKDTNNIDINLSTLDVNDEKVYRTLRSGNTLGIFQLE 662

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPML 682
            SSGM++    +QP  I+D IAL++L+RPGP+D+ +   Y NRK+G+  +      ++P+L
Sbjct: 663  SSGMQEFNRRLQPSGIDDAIALLALFRPGPMDSGMSDEYINRKHGRSPVSYTFKELEPIL 722

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            K T GVI+YQEQVMQI Q++ G+SL EAD++RRAMGKK  + M + + +F  GA KNG  
Sbjct: 723  KNTYGVIVYQEQVMQIVQVIGGFSLGEADLVRRAMGKKDAQIMAENRTKFADGAEKNGFD 782

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
            +T A  +F+ +AKFA+YGFNKSH+AAY ++++QTA++KT+Y  EF+AA ++ E   +E +
Sbjct: 783  RTKAEELFDQIAKFAEYGFNKSHSAAYGILTFQTAYLKTYYEHEFMAAMLSSESHKIEAV 842

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEAS 857
              +  +AR   I+I+PP VNT   +F V     G  +I + L AIKG G    + I++  
Sbjct: 843  ATYIDEARAMGIEILPPHVNTSQTNFSVIIDSNGKKKIVFGLNAIKGAGEGALQSIIDDR 902

Query: 858  AD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
                 F +LEDF ++ D K+++++VLE LV +G+LD  GY+R  +L +LD I    + + 
Sbjct: 903  KQKGAFKNLEDFITKADFKRISKKVLEPLVKSGSLDNLGYTRASMLDNLDYICDLGRRMS 962

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
            + R+     +F  E+     ++ ++     ++    E E   LG Y SGHPLD ++  + 
Sbjct: 963  RERSGG--GLFGAEE--LCPELQIKPLPELHNKSLLEYEYESLGIYLSGHPLDDFRSEIE 1018

Query: 977  KM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++  +    E      G+ + L   +   Q+K ++     G     + + +     F
Sbjct: 1019 QIKNVVKIAELENIADGSRVMLIGKLEDLQRKMSKNNRTYGTAKIMDFSGKQPLTLF 1075


>gi|103486667|ref|YP_616228.1| DNA polymerase III, alpha subunit [Sphingopyxis alaskensis RB2256]
 gi|98976744|gb|ABF52895.1| DNA polymerase III, alpha subunit [Sphingopyxis alaskensis RB2256]
          Length = 1162

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 467/1041 (44%), Positives = 637/1041 (61%), Gaps = 26/1041 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  SP FV L+V SSY++LEGA+    I         PAIA+ D N L+  + F +   A
Sbjct: 1    MAFSP-FVPLRVFSSYTMLEGAIEPKAIAKAARDRGFPAIAVADRNGLYGVMAFGEACQA 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+QPI+G  L +      +   +     P +  + L    A GY  L  LVS  +L   
Sbjct: 60   AGVQPIVGALLSVA-----RPGQRLANGAPLIDWLALYAQDARGYHNLCALVSAAHLGRP 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +Q   + LS +    T+GLI LTGG  G + R         AE  +   + LFG+RLY+
Sbjct: 115  VEQEPHVALSDMT-GRTDGLICLTGGGEGALARLLAGEQQSAAEDYMEQLEALFGERLYI 173

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     +   E+ ++ +AY   LPLVATN + F+  + + AHD ++ +A S  V  +
Sbjct: 174  ELSRRGDATEAAAENALIDMAYARALPLVATNPANFVEPQFHAAHDAMLCIAQSAYVESE 233

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR    P+ +LK    M   FSDLPEA+ NT+ IA+RC+F+         + I       
Sbjct: 234  DRRVSNPEAWLKPAEAMEDAFSDLPEAIRNTLVIAQRCAFMAPK-----RKPILPSLAGD 288

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++ E  +L+  A AGL+ RLA          Q Y +RLD+E++VI +M F GYFLIVADF
Sbjct: 289  REGEAAQLKADAHAGLDARLAHYPDLTDEERQAYVERLDYEIDVITQMGFPGYFLIVADF 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK  +IPVGPGRGSGAGSV A+ALTITD+DPL+  LLFERFLNP+R+SMPDFDIDFC
Sbjct: 349  IKWAKAQDIPVGPGRGSGAGSVVAWALTITDLDPLKLGLLFERFLNPERVSMPDFDIDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            + RR EVIRYVQ KYG + VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P
Sbjct: 409  ETRRGEVIRYVQEKYGRDTVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHP 468

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              P +  +A+   S        D  V RL +++++LEGL RH+STHAAG+VIGDRPL QL
Sbjct: 469  TDPWTLERALNGVSELMTEYKQDDGVRRLFDMARQLEGLPRHSSTHAAGVVIGDRPLDQL 528

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD RSD+PVTQF+MK++E AGL+KFDFLGLKTL++L+++   LA RG+ VDL  + 
Sbjct: 529  VPLYRDPRSDMPVTQFDMKYVETAGLVKFDFLGLKTLSVLKEARRLLALRGIDVDLDTLR 588

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +DD + Y LL    T+G+FQLES GMR+ L  ++P    DIIALV+LYRPGP+DNI ++ 
Sbjct: 589  WDDAQVYELLQRGDTVGVFQLESEGMRRTLSAVKPTSFGDIIALVALYRPGPMDNIPLFG 648

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RKNG+E I   HPL++ +L ET G+ +YQEQVMQ AQ+L+GYSL  AD+LRRAMGKKI+
Sbjct: 649  ARKNGREPIAYPHPLLEGILAETYGIFVYQEQVMQAAQILAGYSLGGADLLRRAMGKKIQ 708

Query: 723  EEMDKQKERFISGASKNGI-SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             EMD Q+E F+ G  ++       A  +F+L+ KFA YGFNKSHAAAYA++SYQTAW+K 
Sbjct: 709  AEMDAQRETFVKGCGEHNQIDAKTANELFDLIDKFAGYGFNKSHAAAYALLSYQTAWLKA 768

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----DNRIYY 837
            H+P EF AASM+ +    +K+  F  D R+  I I PPS+N    DF VG       + Y
Sbjct: 769  HHPHEFFAASMSFDSHQTDKLSVFIDDMRRLGIDIAPPSINESEADFSVGRTDDGLAVRY 828

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            +L A+KGVG      ++    A   F SL+DF SR+D K LNRR +E+L  AGA DC   
Sbjct: 829  ALGALKGVGEKAMEALVAERQARGDFASLDDFASRIDPKLLNRRQIEALAGAGAFDCVEP 888

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R +     + +   A      R+     +F  +    +  + L        + R   E+
Sbjct: 889  DRPRAFAGAEALLACANSSAHERSTGQGGLFGGD-IAIAPTLQLPAAEPWTLAERMTREK 947

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEES---VATIRGNNI--RLAAMVVSKQQKKTRK 1011
               GFYFS HP++ Y+ IL   G + Y +    V    G  I   +AAMV S + + +++
Sbjct: 948  EAFGFYFSAHPVEQYEAILSARGARSYGDICENVEMTPGTRIPMVMAAMVESARARVSQR 1007

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G+R   +T S+ + +++++ F
Sbjct: 1008 GNRFLNLTLSDRSGQFQSSCF 1028


>gi|285018805|ref|YP_003376516.1| DNA polymerase III, alpha chain protein [Xanthomonas albilineans GPE
            PC73]
 gi|283474023|emb|CBA16524.1| probable dna polymerase III, alpha chain protein [Xanthomonas
            albilineans]
          Length = 1198

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1083 (37%), Positives = 603/1083 (55%), Gaps = 79/1083 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  F HL +H+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFAHLHIHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDLPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  L I                     + +L    +GY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADLLIADGS------------QAPWRLTVLCRNRDGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R +L     +  V +   WL + G++ L  L  G +    R        +AE++L
Sbjct: 110  SRLLTRAWLEGHRSEGGVALRPEWL-QSGSDNLFAL-AGRNSLAGRLASEGRHDLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R     +       +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRIFGDGLHLELTRTGRDGEEAFNQFALHAAGMRGLPVVASNDVRFLYASDFAAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   YLK+  EM ++F+D+P+AL+NT+ +A+RC+  +Q+  
Sbjct: 228  RVCISSGRVLDDPKRPREYSDQQYLKSAEEMAALFADIPDALDNTLALAQRCNLQMQLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   +     +  ++ +R+++  GL  RL +  +A G   QDY +RL+FEL+ I 
Sbjct: 288  YFLPAYPVPD----DETLDSWIRSQSRDGLAARLEKHPLAPGKTRQDYVERLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFLIVADFIQW K+  IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFPGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG +RV+QIIT+G++ AKA +RD GR L  PY
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRDRVSQIITYGTMAAKAVVRDCGRVLGFPY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIPN     +                  +   ++  V  L++++++LE L R
Sbjct: 464  GLVDGVAKLIPNILGITLKDAMGEGKDSEMAAPELIQRYQSEEDVRDLIDLARQLEDLTR 523

Query: 524  HASTHAAGIVIGDRPLSQLVPMYR----DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PLS   P++     D     PVTQF+   +E+ GL+KFDFLGL+TL
Sbjct: 524  NAGKHAGGVVIAPTPLSDFCPLFAEHDVDHLGKNPVTQFDKDDVEQVGLVKFDFLGLRTL 583

Query: 580  TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  +  R        V+++ IP DD  TY  +  +  T  +FQ ESSGMR+ L+
Sbjct: 584  TIIDWAVKAINVRHARAGIPAVEITAIPLDDVPTYKDIFASGSTGAVFQFESSGMRRLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +N RK+G++ I+   P  + +LK+T G+++YQE
Sbjct: 644  DAKPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQAILYPDPRTEAILKDTYGIMVYQE 703

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K G+ +  A  IF+L+
Sbjct: 704  QVMQMAQIVGGYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVGEAKADEIFDLM 763

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R   
Sbjct: 764  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823

Query: 814  IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871
            + + PP +N     F+    + I Y L AIKGVG      I+        + SL DFC+R
Sbjct: 824  LTVRPPRINASAYMFEAATPDTIQYGLGAIKGVGRGACEAIVAERERGGAYISLMDFCTR 883

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V+S KLN+R LE+L+ AGA+D    +R  L+  L  + K  + + + R +   ++F +  
Sbjct: 884  VESAKLNKRTLEALIHAGAMDGLDSNRATLMLQLPEVMKATEQMARERASGQNSLFGNAD 943

Query: 932  GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--- 987
             +     + L +            E+  LGFY SGHP D Y+  +R++            
Sbjct: 944  TSAPALHLNLPESKEWPLGQLLAGERETLGFYLSGHPFDPYREEVRELVGCDLGALEKIC 1003

Query: 988  ATIRGNNIR------------------LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            A   G   R                  LA +VV  ++    KG    +V   +     E 
Sbjct: 1004 AQSNGGRGRSGEGDGEKRAWRPEVSAILAGLVVGVRR----KGDSQVFVQLEDGRGRIEC 1059

Query: 1030 NFF 1032
            + F
Sbjct: 1060 SAF 1062


>gi|149278873|ref|ZP_01885008.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39]
 gi|149230492|gb|EDM35876.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39]
          Length = 1477

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1101 (32%), Positives = 562/1101 (51%), Gaps = 94/1101 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----------- 59
            F HL  H+ +S+L+  +++  ++   AA + PA+A+TD  N+  A  F            
Sbjct: 261  FAHLHNHTQFSVLQSTINIPALIKATAAAKMPAVAMTDRANMMGAFHFVAQVINHNKGVD 320

Query: 60   ---QKACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
               Q A   G       I+PI+GC+  +         ++ K        +V L     GY
Sbjct: 321  ARNQAAIEKGEVPEEVPIKPIVGCEFFVC------ENHEDKKRKDDGYQVVFLAKNKAGY 374

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              L ++ S  Y         RI  + +++   + +I+L+G   G I         + AE+
Sbjct: 375  HNLAKMSSIAYTKG-FYYVPRIDKAVVEQY-KDDIIVLSGNLYGEISSKLLNLGEKQAEE 432

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             LL +K  FG+  YV L RH   D       ++ LA  HE+ L+ATNNS +++++D  AH
Sbjct: 433  ALLWWKSQFGEDFYVELMRHSQEDEDIVNVSLMALAKKHEVKLIATNNSYYINKKDANAH 492

Query: 229  DVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            D+L+ V      +                ++Y K+  EM ++F+D+PEA+ N  E+  + 
Sbjct: 493  DILLCVKDGEKQATPIGRGRGFRYGLPNQEYYFKSPEEMKNLFADVPEAILNIKEVIDKI 552

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEEN--------ELRNKAVAGLEVRLAQGAIAKGYH 333
                     +LP+F   E   + ++EE+         LR+    G +          G  
Sbjct: 553  ESYKLAREVLLPKFDIPEEFLVAEDEEDGGKRGENKFLRHLTYVGAKK-------RYGEI 605

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
              D  +RLDFEL  I +  + GYFLIV DFI  A+  ++ VGPGRGS AGS  AY L IT
Sbjct: 606  TDDIAERLDFELQTIEKTGYPGYFLIVQDFIAEARNLDVSVGPGRGSAAGSAVAYCLGIT 665

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            +IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV  KYG  +VAQIIT+G++ 
Sbjct: 666  NIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVIKKYGANQVAQIITYGTMA 725

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPND------------PAHPVSLQAIADDSRFREA 501
            AK++++D  R L +P  + +++ KLIPN                 +           +  
Sbjct: 726  AKSSVKDTARVLDLPLFEAEKIAKLIPNMKLAKIFNLDEKTLKGALRPDEYEKVVELKML 785

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
               +    + LE +Q LEG  R+   HA G++I    ++  VP+     SDL VTQF+  
Sbjct: 786  ATNNDLGAKTLEQAQILEGSLRNTGIHACGVIITPSDITNFVPVSTAKDSDLYVTQFDNS 845

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGI 620
             +E AGL+K DFLGLKTLTL++ ++  +  R     D    P DD +TY L     T+GI
Sbjct: 846  VVESAGLLKMDFLGLKTLTLIKDTVKLVKFRHNIDLDPDNFPIDDAKTYELFQRGETIGI 905

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
            FQ ES+GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RKNG+E+I       + 
Sbjct: 906  FQYESTGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGEEEIKYDLDACEE 965

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
             LKET G+ +YQEQVM ++Q L+G++  EADVLR+AMGKK K+ +DK K +FI+ A++ G
Sbjct: 966  YLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQKDVLDKMKPKFIAQAAEKG 1025

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
               +I   I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA ++  M +++
Sbjct: 1026 HQASILEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNMSDIK 1085

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARH-IMEASA 858
            ++  F ++ +Q  + ++ P VN   + F V    ++ + L+ IKGVG       I+E + 
Sbjct: 1086 QVAFFMEECKQMGVSVLGPDVNESDIKFSVNISGQVRFGLSGIKGVGDKAVESIIIERNE 1145

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL--------QSLDNIQK 910
               + S+ DF  R +++ +N++  ES V++GA DCF Y R Q            ++ + K
Sbjct: 1146 SGLYKSVYDFAKRSNTRTVNKKAYESFVYSGAFDCFSYHRAQYFFVGINDKMNGIEKMIK 1205

Query: 911  YAQWVEKNRTNKHENIFAHEKGT-FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +A   + N  +   ++F          + +L      +   R + E+  +G + SGHPLD
Sbjct: 1206 FANDFQNNEASSQSSLFGAAAADMMISEPSLPVAPEWSLIDRLKYEKDAIGIFLSGHPLD 1265

Query: 970  VYKPILRKMGIKGYEESV------------------ATIRGNNIRLAAMVVSKQQKKTRK 1011
             YK  L++      +                      TI+   + +  +VV   Q+ T+ 
Sbjct: 1266 NYKLELKEFCQHKVKHLSLVNKIRTGDSNEEVLAEFETIKNRELVVGGLVVLATQRITKT 1325

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G   G +TF +     E   F
Sbjct: 1326 GKPFGIITFEDYDDTCELALF 1346


>gi|21234220|ref|NP_639831.1| DNA polymerase III subunit alpha [Streptomyces coelicolor A3(2)]
 gi|13620707|emb|CAC36747.1| putative DNA polymerase III, alpha chain (EC 2.7.7.7) [Streptomyces
            coelicolor A3(2)]
          Length = 1213

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/1084 (30%), Positives = 542/1084 (50%), Gaps = 66/1084 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG- 66
            + SFVHL  H+ YS+L+GA  L  +  ++     PA+A++D  N+F A EF Q A   G 
Sbjct: 15   ADSFVHLHNHTEYSMLDGAQKLKPMFAEVDRQGMPAVAMSDHGNMFGAYEFQQVAKGFGS 74

Query: 67   IQPIIGCQLDIDMQDNLKMTN------------------QGKTPFPTVPSIVLLVSTAEG 108
            ++PIIG +  +                            +  +       + +  + A+G
Sbjct: 75   VKPIIGIEAYVAPSSRRNRRQEFWGPGGQRAVSDDGEGSKDVSGGGRFTHMTMWATGAQG 134

Query: 109  YQRLIELVSRMYLLDQGK-QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
             + L  + +      Q      R+ +  + E   EG++  TG  SG +      N    A
Sbjct: 135  LRNLFYMSTEASYTGQFPAGKPRMDMELIAE-HAEGVVATTGCPSGAVQTRLRLNQYDEA 193

Query: 168  EKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
             +    ++ +FG +  ++ L  H    +R     +++LA    LPL+ATN++ ++ E   
Sbjct: 194  RQVASAYQDIFGKENYFLELMDHGLSIERDVREGLLRLARELSLPLLATNDAHYIHESQA 253

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
            +AHD L+ +      + + R R +   +YLK  +EM ++F++LPEA +NT+ IA R    
Sbjct: 254  DAHDNLLCIGVGKNKADEKRFRFSGSGYYLKTAAEMRALFAELPEACDNTLLIAERVGSY 313

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
             +V   +       +  D  + +E+ LR + + GL +R             +  +R + E
Sbjct: 314  DEVFDNVDEMPQFPDVPD-GETQESWLRKEVLTGLAMRYGDPV------PTEVLERFETE 366

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            ++VI  M FS YFL+VAD  ++A+ N +PVGPGRGS  GS+ AYA  IT++ PL   LLF
Sbjct: 367  MSVIGPMGFSSYFLVVADICKYARDNGVPVGPGRGSATGSIVAYATRITELCPLEHGLLF 426

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R++ PD D+DF   +RD+++RYV  KYG E  A + TFG ++AK A++D  R 
Sbjct: 427  ERFLNPERINPPDVDLDFDDRQRDKMVRYVTEKYGDEYTAMVNTFGKIKAKNAIKDSSRI 486

Query: 465  LQMPYSQVDRLCKLIPND-PAHPVSLQAIADDS--------RFREARLADPSVDRLLEIS 515
            L  P+S  +R+ K +P D     + L  I D            R     +P V  +++ +
Sbjct: 487  LGYPFSHGERITKALPPDIMGKSIPLDGIFDPEHPRHGEAGEIRTMYENEPDVKTVIDTA 546

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + +EGL R    HAA +++    L+  +P++      + +T F+    E  GL+K DFLG
Sbjct: 547  RGVEGLTRGTGVHAAAVILSKTRLTDRIPLHMRASDGVKITGFDYPSCENMGLVKMDFLG 606

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFD-----------DHETYHLLTTKGTLGIFQLE 624
            L+ L ++  +++ + +       ++ P D           D +T+ LL    T G+FQL+
Sbjct: 607  LRNLGVIDHAIENIRENRGVRLATVDPMDGDSGTVVIPLDDKKTFELLGRGDTFGVFQLD 666

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPML 682
              GMR  L+ M+P   EDI A ++LYRPGP+  +    Y  R+NGK++   IHP +  +L
Sbjct: 667  GGGMRALLKLMEPSRFEDIAAALALYRPGPMAANAHTNYALRQNGKQEPDPIHPELKEVL 726

Query: 683  KE----TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
                  T  ++I+QEQ+M IA++L+GY+L  AD+LRRAMGKK  E +  + E+F  G   
Sbjct: 727  DPILGSTHHLLIFQEQIMAIARILAGYTLGGADMLRRAMGKKKPEVLAAEWEKFHDGMKA 786

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            N  S+     I++++  F+ Y FNKSH A Y ++SY TA++K +YP E++AA +T   D+
Sbjct: 787  NDYSEEAIKAIWDVMLPFSGYAFNKSHTAGYGLVSYWTAYLKANYPAEYMAALLTSVGDD 846

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
             +K   +  DAR+  + ++PP VN    +F    + + + L +++ VG      ++ A  
Sbjct: 847  KDKAGIYLADARKLGVTVLPPDVNESVAEFTAVGDDVRFGLRSVRNVGDNVIDTVITARK 906

Query: 859  -DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
                F S  DF  + D   LN+R +ESL+ AGA D  G++R  L    +        ++K
Sbjct: 907  TKGKFTSFADFLDKADLPALNKRAVESLIKAGAFDSLGHTRRGLCAVHETAIDAVVPLKK 966

Query: 918  NRTNKHENIFAHEKGTFSDKITLE-------KFSVENSSVRFENEQRVLGFYFSGHPLDV 970
                  +++FA   G   D                 +       E+ +LG Y S HPLD 
Sbjct: 967  AAAYGQDDLFAGLGGGTGDDGESGFGLDVRIDDGEWSRKQLLSTEREMLGMYVSAHPLDG 1026

Query: 971  YKPILRKMGIKGYEESVAT-IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
             + IL         + +A+      +RL+ ++   Q K T++G+    V  ++     E 
Sbjct: 1027 TEHILAAHRDTTIPDLLASGRTEGTVRLSGLITGVQNKVTKQGNAWAIVNLADRDGTIEV 1086

Query: 1030 NFFP 1033
             FFP
Sbjct: 1087 LFFP 1090


>gi|225076963|ref|ZP_03720162.1| hypothetical protein NEIFLAOT_02015 [Neisseria flavescens
            NRL30031/H210]
 gi|224951716|gb|EEG32925.1| hypothetical protein NEIFLAOT_02015 [Neisseria flavescens
            NRL30031/H210]
          Length = 1144

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/1038 (37%), Positives = 578/1038 (55%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKTCRG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+PI    + I                      +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGMNLLNGNEDAARAAALKYAAWFPDAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K R    TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPCDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A    +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSLDDYLIKLSNEGLQERMVQLYPDEAERAVKMPEYQKRLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L K
Sbjct: 406  FDVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465

Query: 478  LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+    A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + D +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIKNTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  IDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYCFTPYPNMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMNNAD--QKAANANQGGLFDMMEDAIEP-VRLVDTPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++              +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQIEIMV 1014


>gi|297562140|ref|YP_003681114.1| DNA polymerase III subunit alpha [Nocardiopsis dassonvillei subsp.
            dassonvillei DSM 43111]
 gi|296846588|gb|ADH68608.1| DNA polymerase III, alpha subunit [Nocardiopsis dassonvillei subsp.
            dassonvillei DSM 43111]
          Length = 1186

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/1071 (30%), Positives = 538/1071 (50%), Gaps = 53/1071 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            + SF HL VH+ YS+L+GA  L  +  + A    PA+A+TD  N+F A EF Q++   G+
Sbjct: 2    ADSFAHLHVHTEYSMLDGAAKLKPLFKEAARLGMPAVAMTDHGNMFGAYEFYQQSKGTGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTN-----------------QGKTPFPTVPSIVLLVSTAEGYQ 110
             PIIG +  +  +                        +  +       + +L    +G +
Sbjct: 62   TPIIGIEAYVAPESRFHKKRVFWGRSSGSDDASAEGGKDISGGGRYLHMTMLAQNEKGLR 121

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L  + S   + +      R+ L  + E  +EG+I+ TG  SG +         + A   
Sbjct: 122  NLFRMSSLASM-EGYYMKPRMDLELMSEY-SEGIIVSTGCPSGGVQTRLRLGQEKEAVAY 179

Query: 171  LLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
                + +FG + +++ L  H    ++     ++++    ++P + TN+S ++ E    AH
Sbjct: 180  AAGLQDIFGKENVFLELMDHGVPIEKEVRDGLLRVGRELDIPPLVTNDSHYVYESQASAH 239

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS---IFSDLPEALENTVEIARRCSFIL 285
            D L+AV     +    R R     Y    +E +     F +  +   NT+ +A R     
Sbjct: 240  DALLAVGVGKNLDDPTRFRFNGSGYYLKSAEEMRGILNFEEWEQGCRNTLLVAERIDPGA 299

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                      +        + + + L  +    L  R   G         + RQR+DFEL
Sbjct: 300  YDAVFAHRDLMPVFPVPEGETQASWLAKEVERLLPTRYPDG------INGEIRQRVDFEL 353

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             +I  M F  YFL+VAD  Q+A+KN I +GPGRGS AGS+ AY L ITD+DPL   LLFE
Sbjct: 354  GIINEMGFPAYFLVVADICQYARKNGIALGPGRGSAAGSMIAYVLGITDLDPLEHGLLFE 413

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R++MPD D+DF + RR E+I YV   YG ERVAQI+TFG+++AKAA++D  R L
Sbjct: 414  RFLNPERVTMPDVDLDFDERRRGEMIEYVTRLYGAERVAQILTFGTIKAKAAVKDSTRIL 473

Query: 466  QMPYSQVDRLCKLIPNDPAHP---------VSLQAIADDSRFREARLADPSVDRLLEISQ 516
             MPYS  D++ K  P                  +   + +  R     D  V +++E ++
Sbjct: 474  GMPYSVGDQITKAFPAAVGGKEIPLEAVTNTEHERYGETTELRNLIDNDAQVAKVMETAR 533

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             +EGL R    HAAG+++   PL  ++P+++       +T F     E  GL+K DFLGL
Sbjct: 534  GIEGLTRGTGVHAAGVILSKEPLLDVIPLHKRDTDGAIITGFPYPQCEDMGLLKMDFLGL 593

Query: 577  KTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            + LT++  ++  + +  G+ +DL  +P DD +TY LL+   TLG+FQL+   MR  L+ M
Sbjct: 594  RNLTIMDDAVKSIKEAEGIDIDLGKLPLDDRKTYQLLSRGDTLGVFQLDGGAMRNLLKRM 653

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVI 689
            +P    DI A++SLYRPGP+  +    Y +R NG++++  IHP     ++P+L ET  ++
Sbjct: 654  EPKKFGDIAAVLSLYRPGPMAANAHNDYADRSNGRQEVTPIHPELKDALEPILGETFHLL 713

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQ+M IAQ L+GY+L  AD++RRAMGKK KE +++++ +F  GA   G SK     +
Sbjct: 714  VYQEQIMAIAQQLAGYTLGGADLMRRAMGKKKKEALEEEEAKFFPGAEARGFSKEATQAL 773

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++++  FA Y FNKSHAA YA++SY TA++K ++P  ++AA +T   D+ +K+  +  + 
Sbjct: 774  WDVMLPFAGYAFNKSHAAGYALVSYWTAYLKANHPAAYMAALLTSVSDDKDKMAVYLAEC 833

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDF 868
            R   I+++PP VN   + F      I + + A++ VG      I+        F S  DF
Sbjct: 834  RTQGIKVLPPDVNESGLRFTPVGKDIRFGMGAVRNVGANVVNSIIRTRTEKGKFSSFTDF 893

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
             S+++    N+RV+ESL+ AG  D  G  R +L +  +         +K   +   ++F 
Sbjct: 894  LSKIELAACNKRVIESLIKAGGFDSLGQPRRELYRHHETAVDGMISSKKQEAHGQFDLFG 953

Query: 929  HEKGTFSDKITLE---KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                  S  I L         +   +   E+ +LG Y S HPL   + +L +       +
Sbjct: 954  GGDDGDSTPIGLNINWGDEEWDRKTKLAFEREMLGLYVSSHPLAGAERVLARSRDTSIAQ 1013

Query: 986  SVA---TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             VA         +R++ ++    ++  + G++    T  +     E  FFP
Sbjct: 1014 IVAGEMARERGEVRISGLISKVDKRTNKAGNQWAIATVEDLDASMEVLFFP 1064


>gi|261401655|ref|ZP_05987780.1| DNA polymerase III, alpha subunit [Neisseria lactamica ATCC 23970]
 gi|269208234|gb|EEZ74689.1| DNA polymerase III, alpha subunit [Neisseria lactamica ATCC 23970]
          Length = 1144

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/1038 (37%), Positives = 583/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +   +
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+P+    + I                      +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPVGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTEAYVGKD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A    +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSLDDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++  D+L K
Sbjct: 406  FDVDFCQSNRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSK 465

Query: 478  LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S   A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLSLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKSTTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  VDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    D +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I  A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLVDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   + ++     +        +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVCQIAPTKLDRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDLSGQVEIMV 1014


>gi|225025259|ref|ZP_03714451.1| hypothetical protein EIKCOROL_02156 [Eikenella corrodens ATCC 23834]
 gi|224942017|gb|EEG23226.1| hypothetical protein EIKCOROL_02156 [Eikenella corrodens ATCC 23834]
          Length = 1143

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/1038 (37%), Positives = 594/1038 (57%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P ++ L+ H+ +S+ +G L +  ++ K +A   PA+ I+D  N F  ++F +    
Sbjct: 1    MT-APVYIPLRQHTEFSITDGTLRIKELVKKASAFGLPALGISDLMNTFGLVKFYKACRG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+P++G  + +   +N +               +LLV    GY+RL EL++R Y+   
Sbjct: 60   AGIKPVVGADVWVANPENPEQP----------FRAMLLVRNEAGYRRLCELLTRAYVGTD 109

Query: 125  GK-QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                   +   WL E G EGLI L+G   G + R         A      + + F D  Y
Sbjct: 110  RNVAHAELEPQWLAEGGNEGLICLSGAHLGEVGRQLMNGHDSAACAAAQKYAQWFPDAFY 169

Query: 184  VNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR      +    S  ++LA    LP+VAT+ + FL+ +D++AHD  + +A   V++
Sbjct: 170  LELQRLPEKPEWETSVSGSLKLAAELGLPVVATHPAQFLNPDDFKAHDARVCIAGGWVLA 229

Query: 242  QKDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR      Y  +  E+ + F+DLPEAL+NTVEIA+RC+  L +    LP+F   + 
Sbjct: 230  DKRRPRDFVAGQYFASPEEVAARFADLPEALQNTVEIAKRCNLTLTLGKNFLPQFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357
              +    ++ L + +  GL  RLA     +    Q   +Y+ RLDFEL  I +M F GYF
Sbjct: 290  MSL----DDYLAHLSNQGLRERLAALYPDEAEREQKLPEYQARLDFELGTIVQMGFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK N  PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPD
Sbjct: 346  LIVADFINWAKNNGCPVGPGRGSGAGSLVAYSLKITDLDPLRYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ+ R  VI YV+ KYG E V+QI+TFG+L +KA +RDVGR L++P+   DRL K
Sbjct: 406  FDIDFCQNNRGRVIEYVRQKYGFEAVSQIVTFGTLSSKAVIRDVGRVLELPFGVCDRLSK 465

Query: 478  LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S  +A+  +    +    + + + +    +KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLSLEKAMEAEPEIAKVLEEEEAEELMELA-KKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + +F+AQ    +
Sbjct: 525  GKISDFCPVYQADESASPVSMYDKGDVEDIGLVKFDFLGLRNLTIIEMAQEFIAQTTGER 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D++ I   D + Y +     T  +FQ ES+GM++ L       +E+IIA VSLYRPGP+
Sbjct: 585  IDVNHIDLTDQQAYEVFRKANTTAVFQFESTGMKKMLAQANTTKLEEIIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            D I  +   +    +   +H L++P+L+ T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DLIPDFIA-RMKGARFEYMHLLLEPVLQPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GI++  A  IF+ + KFA YGFNKSHAAAYA+++YQ
Sbjct: 704  AMGKKKPEEMAKHREIFAEGAAKQGIAREKADEIFDYMEKFAGYGFNKSHAAAYALVAYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNR 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  DAR   I+ +PP VN     F+    +R
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKLFYDDARDNGIRFLPPDVNHSGYHFQPDAQHR 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I+ A  +   F SL DFC RV  + +NRR +E+LV  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVEAIVAAREEGGAFKSLFDFCERVSRQHINRRTIEALVRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R +LL ++D     A+  ++        +F   +   +  + +        +    
Sbjct: 884  IEPNRARLLANIDLAMSNAE--QQEENANQGGLFDMVEDAIAP-LEMIDVPAWGEAELLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E++ +GFYFSGHP    +  +R+       +       +N+R+A    + +    ++G 
Sbjct: 941  EEKQAIGFYFSGHPFGPAEKEVRQFAPTRLSQLKP---NDNVRVAGFATAIRSMVGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I ++T  +   + E   
Sbjct: 998  -IAFITLEDTGGKAEVMV 1014


>gi|294011725|ref|YP_003545185.1| DNA polymerase III alpha subunit [Sphingobium japonicum UT26S]
 gi|292675055|dbj|BAI96573.1| DNA polymerase III alpha subunit [Sphingobium japonicum UT26S]
          Length = 1178

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 469/1046 (44%), Positives = 635/1046 (60%), Gaps = 32/1046 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FV L+V SS+++LEGA+    I  +  A   PA AITD N L+ ++ FS     
Sbjct: 1    MPHA-GFVPLRVFSSFTMLEGAIDPKKIAKQAKALGFPAAAITDRNGLYGSMAFSDACKG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPIIG  + +   D                   L    A GY  L  LVS  +L   
Sbjct: 60   EGVQPIIGAMVGVSRPDRPANAAPVHDWIA------LYAQDAAGYDNLCALVSMAHLDRP 113

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             ++   I L  L E  T+GLI LT G  G + R F  +    A       + LF  RLY+
Sbjct: 114  VEEVPHISLDML-EGRTDGLIALTAGGEGALARLFAEDQPAAALAYAKRLEALFPGRLYI 172

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             + R     +   E +++ LAY  +LPLVATN + F     +EAHDV++ +A S  V   
Sbjct: 173  EICRRFDPIEGKAEPELLDLAYARDLPLVATNPTCFAEPHFHEAHDVMLCIADSAYVETP 232

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR   +PD ++K  +EM  +F DLPEAL NT+ +A+RC+           + I       
Sbjct: 233  DRRTSSPDAWMKPAAEMKRLFDDLPEALANTLVVAQRCAVAAPK-----RKPILPSLAGD 287

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             + E   LR +A AGLE RLA+  IA     + Y +RL FE ++I +M F GYFLIVADF
Sbjct: 288  IEGEAKMLREQATAGLEARLAKAGIADEEARKPYFERLKFETDIIIQMGFPGYFLIVADF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK  +IPVGPGRGSGAGSV A+ALTITD+DPL+  LLFERFLNP+R+SMPDFDIDFC
Sbjct: 348  IKWAKDKDIPVGPGRGSGAGSVVAWALTITDLDPLQLGLLFERFLNPERVSMPDFDIDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            + RR EVIRYVQ KYG + VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P
Sbjct: 408  ETRRGEVIRYVQQKYGADHVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHP 467

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              P +  +++   + FR     D  V RL++ + KLEG  RH+STHAAG+VIGDRPLSQL
Sbjct: 468  TDPWTLERSLNGVAEFRAEYDNDAQVKRLIDYAMKLEGFPRHSSTHAAGVVIGDRPLSQL 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD RSD+PVTQF+MK++E AGL+KFDFLGLKTL++LQK++  LA RGV++DL+ + 
Sbjct: 528  VPLYRDPRSDMPVTQFDMKYVEGAGLVKFDFLGLKTLSVLQKAVQLLAGRGVEIDLNSLG 587

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +DD   Y LL    T+G+FQLES GMR+ L  ++P    DIIALVSLYRPGP+DNI ++ 
Sbjct: 588  WDDPAVYELLQRGDTVGVFQLESEGMRKTLAAVRPTNFGDIIALVSLYRPGPMDNIPMFG 647

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RKNG+E+I   H L+ P+L+ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKKIK
Sbjct: 648  RRKNGQEEIEYPHILLKPILEETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKIK 707

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EMD Q+ RF+ G +K+ I+   A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K H
Sbjct: 708  AEMDAQRARFVEGCAKSDIAAAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAH 767

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----------- 831
            YP EF AASM  ++   +K+  F  D R+  +  + P +N    DF V            
Sbjct: 768  YPAEFYAASMAFDIHLTDKLTVFVDDMRRMGLTCLAPDINRSLADFSVEAVDCEGDDPRL 827

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               + Y+L  +KGVG      ++    A   F SL+DF  R++ + LNRR LESL  AGA
Sbjct: 828  GFAVRYALGGLKGVGEKAMEQLVAEREAGGSFKSLDDFADRIEPRLLNRRQLESLAAAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D     R  +  + + I   A    + R +    +F   +   +D + +      +++ 
Sbjct: 888  FDGVHPDRAGVHAAAETILSVASSAAEARESGQGGLFGDVETPHAD-VRVPPHQTWSTAD 946

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNI--RLAAMVVSKQQ 1006
            R   E+   GFYFS HP+D Y+ +    G K Y    A     G      +AAMV   + 
Sbjct: 947  RMAQEKEAFGFYFSAHPVDRYRHLAEARGAKSYGAICAEPVAEGGRANGVMAAMVEDVRW 1006

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++TR+G+R    TFS+ + +++A+ F
Sbjct: 1007 RETRRGARYAAATFSDSSGQFQASCF 1032


>gi|300858796|ref|YP_003783779.1| DNA polymerase III subunit alpha [Corynebacterium pseudotuberculosis
            FRC41]
 gi|300686250|gb|ADK29172.1| DNA polymerase III alpha subunit [Corynebacterium pseudotuberculosis
            FRC41]
 gi|302206501|gb|ADL10843.1| DNA polymerase III subunit alpha [Corynebacterium pseudotuberculosis
            C231]
 gi|302331056|gb|ADL21250.1| DNA polymerase III subunit alpha [Corynebacterium pseudotuberculosis
            1002]
 gi|308276743|gb|ADO26642.1| DNA polymerase III subunit alpha [Corynebacterium pseudotuberculosis
            I19]
          Length = 1186

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/1070 (30%), Positives = 531/1070 (49%), Gaps = 49/1070 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K  SFVHL  H+ YS+L+G   ++ + +++     PA+ +TD  N+F +  F +    
Sbjct: 1    MAKKSSFVHLHNHTEYSMLDGMAKVDMLAEEVLRQGMPAVGMTDHGNMFGSDAFYRTMKK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG++PIIG +  +        T              +         +L   AEG + L  
Sbjct: 61   AGVKPIIGIEAYMAPDSRFNKTRVRWGEPHQKSDDVSASGAYLHQTMLAENAEGLRNLFY 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E  + G+I  TG  SG +           A +    +
Sbjct: 121  LSSMASYEGQLGKWPRMDADLIAEHAS-GIIATTGCPSGDVQTRLRLGQFDQALEAAAMW 179

Query: 175  KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++G +  ++ L  H    +    S+++++    +LP + TN+  ++ E    AH+ ++
Sbjct: 180  QDIYGKENYFLELMDHGLEIENRVRSELLEIGRKLDLPPLVTNDCHYVLESQAPAHEAML 239

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQVHAP 290
             V     +S  DR +     Y    +E +    D  +PEA +NT+ IA R     ++   
Sbjct: 240  CVQTGKTLSDPDRFKFDGSGYYIKTAEQMREMWDSLVPEACDNTLWIAERVQDYGEIWEE 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +            + LR++ + GL VR   G        Q Y  R ++E++VI  
Sbjct: 300  HTHDRMPIADVPEGHTPTSWLRHEVLEGLRVRFNGG-----EVPQSYIDRAEYEISVIDM 354

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LLFERFLNP
Sbjct: 355  KGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHDLLFERFLNP 414

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR--ALQMP 468
            +R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K A++D  R    Q  
Sbjct: 415  ERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQAIKDSARVQYGQPG 474

Query: 469  YSQVDR---------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            Y   DR         + K IP             +    R     DP V ++ + ++ LE
Sbjct: 475  YQIADRITKELPPAIMAKDIPLSGIMDPEHPRYGEAGEVRNLIETDPDVKKIYDTARGLE 534

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R A  HA  +++   PL + +PM++       +T +     E  GL+K DFLGL+ L
Sbjct: 535  GVVRQAGVHACAVIMASVPLLEHIPMWKRAADGALITGWPYPACEAIGLLKMDFLGLRNL 594

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++   ++ +   R   VDL  +  DD + Y LL++  TLG+FQL+S GM++ L+ MQP 
Sbjct: 595  TVIGDCIENIKINRKETVDLEELTTDDPKVYELLSSGDTLGVFQLDSGGMQELLKRMQPT 654

Query: 639  CIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQ 692
               DI+A ++LYRPGP+  +    Y +RKNG++ I  IHP +D      L ET G+I+YQ
Sbjct: 655  GFHDIVASLALYRPGPMGVNAHWDYADRKNGRKPIEPIHPELDEPLREILDETYGLIVYQ 714

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + KQ ++F+ G   NG SK     ++  
Sbjct: 715  EQIMRISQKVANYTAGEADGFRKAMGKKQPEVLAKQYDKFLEGMLSNGYSKGAVDALWGT 774

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  FA Y FNKSHAA Y ++SY TA++K +Y  E++AA +T   D  +K   +  + R  
Sbjct: 775  IEPFASYAFNKSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVADKKDKSAIYLSNCRHL 834

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
             I ++ P VN   ++F    N I + L A++ VG      I++A  +   F    D+  +
Sbjct: 835  GISVLSPDVNESRLNFLPVGNDIRFGLGAVRNVGEDVVNSIVKARQEKGGFSDFSDYLDK 894

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            +D+   N+RV ESL+ AGA D  G+ R  LL   ++        +K       ++FA   
Sbjct: 895  IDTVACNKRVTESLIKAGAFDSLGHPRKGLLLIHEDAVDSVISTKKAADKGQFDLFAGFG 954

Query: 932  GTFSD-----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            G  +       + + + +  +   +   E+ +LG Y SGHPLD Y+  L           
Sbjct: 955  GDDASMGNAFAVQIPE-AQWDRKHQLALEREMLGLYVSGHPLDGYEEALDAQTDTQLTTI 1013

Query: 987  V--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
            +      G  +++  ++ S  ++ ++K GS    VT  +    + +   F
Sbjct: 1014 LAGELRNGAEVQIGGIISSVDRRYSKKDGSPWAIVTIEDHHGAQVDLLVF 1063


>gi|309790186|ref|ZP_07684758.1| DNA polymerase III, alpha subunit [Oscillochloris trichoides DG6]
 gi|308227771|gb|EFO81427.1| DNA polymerase III, alpha subunit [Oscillochloris trichoides DG6]
          Length = 1269

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/1068 (32%), Positives = 533/1068 (49%), Gaps = 70/1068 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F+HL VHS YSLL+G  S   I  + A     +IA+TD   ++ A+EF   A  AGI+P
Sbjct: 3    DFIHLHVHSEYSLLDGYASTKAIAGRAAELGMDSIALTDHGVMYGAMEFYDAAKKAGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-- 127
            IIG +  +      + T +G         ++LL     GY+ L+ L +R +L    K   
Sbjct: 63   IIGMEAYMAPGSRTEATTRGGK---NYFHLLLLAKNEVGYRNLVRLTTRAHLDGMAKGVF 119

Query: 128  -SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
               RI    L++   EGL++ +   +G + +       + A +    ++ L G +  ++ 
Sbjct: 120  ARPRIDRELLEQYH-EGLVVTSACIAGEVIQQLTAQQRKQAVETAAYYRDLLGAENYFLE 178

Query: 186  LQRHR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV--- 240
            LQ H           ++V++     +PLV TN++ F+  ED E    +MA+  +      
Sbjct: 179  LQLHENTPELEGINDELVRIGEELGIPLVVTNDTHFVRAEDVETQHRVMAMGMNMTHQEF 238

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              K        H +                LENT  IA  C+  L      LP+F   E 
Sbjct: 239  CNKGFKMDESYHIMSGEEMWAKFKRYGTAPLENTRRIADMCNLKLDFGRVQLPQFDLPEG 298

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D      + LR     GL  R        G    +Y  RLD EL+VI    F  Y LIV
Sbjct: 299  HD----AASYLRLVCEEGLMKRC------NGNPPANYIARLDDELDVINATGFPDYMLIV 348

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D++++A+   IP  P RGS   S+  Y L ITD+DP++  LLFERFL+ +R+ MPD D 
Sbjct: 349  WDYVKYARSRGIPCLP-RGSAGASLVLYCLGITDVDPVQNKLLFERFLSRERLEMPDIDT 407

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR E++ Y+  KYG E VAQIIT+G+L AKAALRD+GR L +  S+VDR+ KLIP
Sbjct: 408  DFADSRRGEILDYIAGKYGRENVAQIITYGTLGAKAALRDMGRVLGVELSEVDRVAKLIP 467

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            + P      QA+      ++     P +  +++ ++K+EG  R+  THA G+V+   PL 
Sbjct: 468  SLPVGVTISQALERVPELKQIYTTQPHLAEVIDWAKKVEGRMRNVGTHACGVVVSRTPLE 527

Query: 541  QLVPMYRDVRSDLPVT-QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
            ++VP+ R  + +  V   F    + K GL+K D LGL  L+++ ++L+++ +  G+K++L
Sbjct: 528  EMVPLQRTTKDEHAVMASFEGPTLAKMGLLKMDILGLTNLSVVAEALNYIERSTGIKMEL 587

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D +T+  L    T  +FQLES+GM + L  ++P  ++D+ A+V+LYRPGP++ I
Sbjct: 588  ADIPLEDKKTFEALGRGETKNVFQLESAGMTRYLMQLKPTRVDDLYAMVALYRPGPLEQI 647

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y   KN    I  +HP++ P+L++T GVI+YQEQ+MQ+ Q ++ Y+L +A ++ +A+ 
Sbjct: 648  PHYIQGKNDPANITYLHPILKPILEDTYGVIVYQEQIMQLLQTVADYTLGQAYIVIKAIS 707

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK KE M +   +F  G  K GIS  +A  ++EL+  FA Y FN+ HA  Y ++SYQTAW
Sbjct: 708  KKNKELMAENGAKFKEGCLKKGISAQVADELWELILPFAGYSFNRPHATLYGLLSYQTAW 767

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831
            +K +YPVE++AA +T     +E + K   + R+  + ++PP VN     F++        
Sbjct: 768  LKVNYPVEYMAAVLTGAGGVIEDVAKAALETRRLGVALLPPDVNHSQKGFEIEPIQGQLP 827

Query: 832  -----DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                  N I + LAAIK VG      I+EA      F +LED C+RVD   +N+RVLESL
Sbjct: 828  NGVRYQNAIRFGLAAIKNVGEGPLDAILEARTEGGAFSTLEDLCARVDRNAINKRVLESL 887

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-------AHEKGTFSDKI 938
            + AGALD    +R Q L  LD     A   +K R     ++F        ++      +I
Sbjct: 888  IKAGALDSLPGTRRQKLTVLDQAISAATEAQKARDVGQASLFDMMGESSGNDGSINVPRI 947

Query: 939  TLEKFSVENSSVR-------------FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
             L   +   + ++               N+           P+      +   GI    E
Sbjct: 948  NLPPITTTPADMKEELLWERELLGLNITND-----------PVSQALTGVNWTGITRLNE 996

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  G + +   ++   +   T+KG  +      +     E   FP
Sbjct: 997  ITEEHIGKSFKFIGLLSGVRHISTKKGDAMLVGVVDDATGTIEMVVFP 1044


>gi|170729407|ref|YP_001774840.1| DNA polymerase III subunit alpha [Xylella fastidiosa M12]
 gi|167964200|gb|ACA11210.1| DNA-directed DNA polymerase [Xylella fastidiosa M12]
          Length = 1193

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1078 (37%), Positives = 622/1078 (57%), Gaps = 74/1078 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             + SFVHL +H+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  L I   ++                + LL     GY  L
Sbjct: 62   FALIKFYKAAETVGIKPISGADLLIAEPEHTPWG------------MTLLCRDHAGYLNL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
             +L+SR +L     +  V +   W+++   + L  L G     + + F    + +AE++L
Sbjct: 110  SQLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIG-RHSLVGQLFAKGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R     +       +Q+A    +P++A+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + +A   ++    RPR  +   YL++  EM ++F+D+P+AL+NT  +A+RC+  +++  
Sbjct: 228  RVCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +         +  ++ +R ++  GLE RL +  +A G   +DY  RL+FEL+ I 
Sbjct: 288  YFLPNYPVPN----DETLDSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M FSGYFLIVADFIQW K+  IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC +RRDEVI YV  KYG ERV+QIIT+G++ AKA +RDVGR L  PY
Sbjct: 404  PERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADD------SRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIP+     +       +      +   +   A+  V  LL ++++LE L R
Sbjct: 464  GLVDSVAKLIPSTLGITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTR 523

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PL++  P++ +   +     PVTQF+   +E+ GL+KFDFLGL+TL
Sbjct: 524  NAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTL 583

Query: 580  TLLQKSLDFLAQRGVKVDLSLI-----PFDDHETY-HLLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  + +R  +  +  +     P DD  TY  +  +  T  +FQ ESSGMR+ L+
Sbjct: 584  TIIDWAVKAINKRHARACIDPVDITALPLDDLPTYKDIFASGNTSAVFQFESSGMRRLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +  RK+G ++ +   P    +LK+T G+++YQE
Sbjct: 644  DARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQE 703

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K G+    A  IF+L+
Sbjct: 704  QVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLM 763

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  +AR  N
Sbjct: 764  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNLN 823

Query: 814  IQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
            ++++ P++N     F+    + I Y L AIKGVG +    I++      P+ SL DFC+R
Sbjct: 824  LKVLRPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCTR 883

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-E 930
            V S KLNRR LE+++ AGALD  G +R  ++  L  + K  + + + R +   ++F + +
Sbjct: 884  VTSAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNAD 943

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE----- 985
             GT + ++ L +      +     E+  LG YFSGHP D Y+  ++++            
Sbjct: 944  PGTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALER 1003

Query: 986  -SVATIRGN----------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +  RGN          N  LA +VVS ++    KG    +V   +     E + F
Sbjct: 1004 ILSSQQRGNGEKRTWQPEVNTILAGLVVSMRR----KGDSQVFVQLEDGRGRIECSAF 1057


>gi|238020460|ref|ZP_04600886.1| hypothetical protein GCWU000324_00342 [Kingella oralis ATCC 51147]
 gi|237867440|gb|EEP68446.1| hypothetical protein GCWU000324_00342 [Kingella oralis ATCC 51147]
          Length = 1156

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/1032 (38%), Positives = 579/1032 (56%), Gaps = 33/1032 (3%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L+ HS +S+ +  + +++ +    A+  PA+A+TD  N F  L+F +    AGI+PI 
Sbjct: 4    IPLRAHSEFSITDSIIRISDYVAAARAENYPALALTDLMNTFGLLKFYKACRKAGIKPIC 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY-LLDQGKQSVR 130
            G  + I+  +  +  ++           VLL+   +GY RL EL++  +   D+ K + +
Sbjct: 64   GADVRIENPEQPEKPHRA----------VLLIRNEQGYIRLNELLTAAFEADDRNKHTPQ 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            I  +WL +    GL+ L+G   G +       +   A      +   F +  Y+ LQR  
Sbjct: 114  INQAWLAQGDNSGLLCLSGAQMGEVGSHLMLGNEDKAHAAAQKYAAWFPNAFYLELQRLP 173

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             +       S  +++A   +LP+VAT+ + FL  EDY+AHD  + +A    +    RP  
Sbjct: 174  EKPDWEISVSGSLKIAQALQLPVVATHPTQFLQREDYKAHDARVCIAGGWTLIDPKRPHD 233

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             TP  +     E  + F+D+PEAL N+ EIA+RC+  L +    LP F   +  D+    
Sbjct: 234  FTPGQHFLTPDEFAARFADIPEALANSQEIAKRCNLTLTLGKNFLPLFPTPDGMDLN--- 290

Query: 308  ENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             + LR+ A  GL+ RL         +     +Y+ RLDFEL++I +M+F GYFLIV DFI
Sbjct: 291  -DYLRHLANEGLQERLAVLYPNEAERAQRQPEYQARLDFELDIIIKMQFPGYFLIVQDFI 349

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAK N  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 350  NWAKNNGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDIDFCQ 409

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
              R  VI YV+ KYG + V+QI+TFG++ +KA +RDVGR LQ+P++  DRL KLIP +  
Sbjct: 410  ANRGRVIEYVREKYGKQAVSQIVTFGAMSSKAVIRDVGRVLQLPFALCDRLSKLIPLEAN 469

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             P+ L+         E  + +   D LL ++ KLE L R+   HA G++I    +S    
Sbjct: 470  KPLHLKDALAAEPEIEQIIREEEADELLNLAMKLEDLTRNLGMHAGGVLIAPSKISDFCG 529

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            +Y+   +  PV+ F+   +E+ GL+KFDFLGL+ LT+++ + +F+ Q     VD+S IP 
Sbjct: 530  VYQADENASPVSMFDKGDVEEIGLVKFDFLGLRNLTIIEMAQNFIRQTTGEHVDVSHIPL 589

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD   Y +     T  +FQ ESSGM++ L       +E+IIA VSLYRPGP+D I  +  
Sbjct: 590  DDQVAYKIFRDANTTAVFQFESSGMKKMLAQANTTNLEEIIAFVSLYRPGPMDLIPDFIE 649

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             +    K   +HPL++P+L+ T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGKK  E
Sbjct: 650  -RMKGAKFEYMHPLLEPVLEPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRRAMGKKKPE 708

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM K +E F  GA+K GIS+  A  IF+ + KFA YGFNKSHAAAYA +SYQTAW+K HY
Sbjct: 709  EMVKHREIFAEGAAKQGISREKADEIFDYMEKFAGYGFNKSHAAAYAYVSYQTAWLKAHY 768

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQ--FNIQIMPPSVNTPCVDFKVG-DNRIYYSLA 840
            P EF+AA+M+ E+DN +++K F  DA+     I+ +PP VN     F      +I Y+L 
Sbjct: 769  PAEFMAATMSSELDNTDQLKVFFDDAQSKLNGIRFLPPDVNESFYRFIPNAQKQIRYALG 828

Query: 841  AIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AIKG G      I+ A      F  L DFC RV  +  NRRVLE+L+  GA D    +R 
Sbjct: 829  AIKGTGEAAVNAIVAARESGGKFTDLFDFCERVGKQHANRRVLEALIRGGAFDSIEPNRA 888

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
             LL ++D     AQ  +K        +F   +   +D + L+     N + +   E++ +
Sbjct: 889  MLLGNIDLAI--AQAEQKADNANQGGLFDMVEDALAD-VPLQYIEPWNEATKLAEEKQAI 945

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            GFY SGHP   Y   +R           A   G   RLA    S +   T+ G  I  + 
Sbjct: 946  GFYLSGHPFAPYASEVRAFAPTPLGSLKA-KDGTQ-RLAGFATSIRSIMTKNGKMIAVL- 1002

Query: 1020 FSEPAKEYEANF 1031
              +   + E   
Sbjct: 1003 LEDDTAKQEVII 1014


>gi|307292876|ref|ZP_07572722.1| DNA polymerase III, alpha subunit [Sphingobium chlorophenolicum L-1]
 gi|306880942|gb|EFN12158.1| DNA polymerase III, alpha subunit [Sphingobium chlorophenolicum L-1]
          Length = 1178

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 466/1046 (44%), Positives = 634/1046 (60%), Gaps = 32/1046 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  FV L+V SS+++LEGA+    I  +  A   PA AITD N L+ ++ FS     
Sbjct: 1    MPHA-GFVPLRVFSSFTMLEGAIDPKKIAKQAKALGFPAAAITDRNGLYGSMAFSDACKG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QP+IG  + +   D                   L    A GY  L  LVS  +L   
Sbjct: 60   EGVQPVIGAMVGVARPDRPANAPPVHDWIA------LYAQDAAGYDNLCALVSMAHLERP 113

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             ++   I L+ L E  T+GLI LT G  G + R F  +    A       + LF DRLY+
Sbjct: 114  VEEVPHISLAML-EGRTDGLIALTAGGEGALARLFAEDQPAAALAYAKRLEALFPDRLYI 172

Query: 185  NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             + R     +   E +++ LAY   LPLVATN + F     +EAHDV++ +A S  V   
Sbjct: 173  EICRRLDPVEGKAEPELLDLAYARNLPLVATNPTCFAEPHFHEAHDVMLCIADSAYVETP 232

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR   +PD ++K  +EM  +F DLPEAL NT+ +A+RC+           + I       
Sbjct: 233  DRRTSSPDAWMKPAAEMKRLFEDLPEALANTLVVAQRCAVAAPK-----RKPILPSLAGD 287

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             + E   LR +A  GLE RLA+  I      + Y  RL FE ++I +M F GYFLIVADF
Sbjct: 288  IEGEAKMLREQAAEGLEARLAKAGIIDEEARKPYFDRLKFETDIIIQMGFPGYFLIVADF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK  +IPVGPGRGSGAGSV A+ALTITD+DPL+  LLFERFLNP+R+SMPDFDIDFC
Sbjct: 348  IKWAKDQDIPVGPGRGSGAGSVVAWALTITDLDPLQLGLLFERFLNPERVSMPDFDIDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            + RR EVIRYVQ KYG + VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P
Sbjct: 408  ETRRGEVIRYVQQKYGADHVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHP 467

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              P +  +++   + FR     D  V RL++ + KLEG  RH+STHAAG+VIGDRPLSQL
Sbjct: 468  TDPWTLERSLNGVAEFRAEYDNDNQVRRLIDYAMKLEGFPRHSSTHAAGVVIGDRPLSQL 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD RSD+PVTQF+MK++E AGL+KFDFLGLKTL++LQK++  LA RGV++DL+ + 
Sbjct: 528  VPLYRDPRSDMPVTQFDMKYVEGAGLVKFDFLGLKTLSVLQKAVQLLAGRGVEIDLNSLG 587

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +DD   Y LL    T+G+FQLES GMR+ L  ++P    DIIALVSLYRPGP+DNI ++ 
Sbjct: 588  WDDPAVYELLQRGDTVGVFQLESEGMRKTLAAVRPTNFGDIIALVSLYRPGPMDNIPMFG 647

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RKNG+E+I   H L+ P+L+ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKKIK
Sbjct: 648  RRKNGQEEIEYPHILLKPILEETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKIK 707

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EMD Q+ RF+ G +++ I+   A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K H
Sbjct: 708  AEMDAQRARFVEGCARSDIATGKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAH 767

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----------- 831
            YP EF AASM  ++   +K+  F  D R+  +  + P +N    DF V            
Sbjct: 768  YPAEFYAASMAFDIHLTDKLTVFVDDMRRMGLACLAPDINRSQADFSVEAIEQEGDDPRL 827

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               + Y+L  +KGVG      ++    A  PF SL+DF  R++ + LNRR LESL  AGA
Sbjct: 828  GFAVRYALGGLKGVGEKAMEQLVAEREAGGPFKSLDDFADRIEPRLLNRRQLESLAAAGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D     R  +  + + I   A    + R +    +F   +   +D + +      +++ 
Sbjct: 888  FDGVYADRAGVHAAAETILSVASSAAEARESGQGGLFGDVETPHAD-VRIPPHQTWSTAD 946

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNI--RLAAMVVSKQQ 1006
            R   E+   GFYFS HP+D Y+ +    G K Y    A     G      +AAMV   + 
Sbjct: 947  RMAQEKDAFGFYFSAHPVDRYRHLAEARGAKSYGAICAEPVAEGGRANGVMAAMVEDVRW 1006

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++T++G+R    TFS+ + +++A+ F
Sbjct: 1007 RETKRGARYAAATFSDSSGQFQASCF 1032


>gi|289662892|ref|ZP_06484473.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv.
            vasculorum NCPPB702]
          Length = 1196

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1082 (37%), Positives = 601/1082 (55%), Gaps = 78/1082 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 110  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRDSLAGRLFSEGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+ A+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGRDGEERFNQFALNAAGVRGLPVAASNDVRFLYASDFNAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   Y+K+  EM ++F+D+P+A++NT  +A+RC+  +++  
Sbjct: 228  RVCISSGRVLDDPKRPRDYSDQQYMKSSEEMAALFADIPDAIDNTYALAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   E     +  ++ +R+++  GL  RL +  +A G   QDY  RL+FEL+ I 
Sbjct: 288  YFLPAYPVPE----DETLDSWIRSQSRDGLAARLEKSPLAPGKTRQDYVDRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIPN     +                  +    +  V  L++++++LE L R
Sbjct: 464  GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLTR 523

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PLS+  P++ +   D     PVTQF+   +E  GL+KFDFLGL+TL
Sbjct: 524  NAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 583

Query: 580  TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  +  R        VD++ IP DD  TY  +  +  T  +FQ ESSGMR+ L+
Sbjct: 584  TIIDWAVKAINVRHARAGIDPVDITTIPLDDMPTYKGVFASGSTGAVFQFESSGMRRLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQE
Sbjct: 644  DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEAILKDTYGIMVYQE 703

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L+
Sbjct: 704  QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 763

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R   
Sbjct: 764  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823

Query: 814  IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871
            + + PP VN     F+    + I Y L AIKGVG      I+E      P+ +L DFC+R
Sbjct: 824  LTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 883

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F    
Sbjct: 884  VGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943

Query: 932  GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
             +    ++ L +            E+  LGFY SGHP D ++  +R++           +
Sbjct: 944  PSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVRELVGCDLGALEKIL 1003

Query: 991  RGNN--------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                                      +A  V+  ++    KG    +V   +     E +
Sbjct: 1004 ASQQRGGGGGGGDGEKRAWRPEVSAIVAGQVIGVRR----KGDSQVFVQLEDGRGRVECS 1059

Query: 1031 FF 1032
             F
Sbjct: 1060 AF 1061


>gi|300741276|ref|ZP_07071297.1| DNA polymerase III, alpha subunit [Rothia dentocariosa M567]
 gi|300380461|gb|EFJ77023.1| DNA polymerase III, alpha subunit [Rothia dentocariosa M567]
          Length = 1180

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1069 (34%), Positives = 547/1069 (51%), Gaps = 54/1069 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K   F HL VH+ YS+L+GA  L ++          ++A +D   LF A +F ++A A
Sbjct: 1    MAK-KGFAHLHVHTEYSMLDGAARLGDLFQYARELGMDSMATSDHGFLFGAFDFWRQAKA 59

Query: 65   AGIQPIIGCQLDIDMQDNL---------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
              I+PIIG +  +    +            +    +       + +   T EG   L   
Sbjct: 60   NDIKPIIGVEAYLTPGTHRTDRSRVRWGDGSRDDVSGGGAYTHMTMWAETTEGMHNLFRA 119

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S   L  Q     R+    LQ   ++GLI  TG  SG I         Q A      F+
Sbjct: 120  SSVASLEGQLY-KPRMDREVLQTY-SKGLIATTGCPSGEIQTRLRLGQYQEAVAAAAEFR 177

Query: 176  KLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             +FG D  Y  +  H    +R  ++ + +LA    LP VATN+  +  +ED+ AH  L+ 
Sbjct: 178  DIFGKDNFYCEVMDHGLDIERNVQADLHRLAKELNLPFVATNDLHYTRQEDHTAHAALLC 237

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            V   + ++   R +    + YL++  EM  IF D+P A ENT+EIA RC+      A  +
Sbjct: 238  VQSGSTLTDPKRFKFDADNFYLRSPEEMYQIFGDVPGACENTLEIAERCNVEFNTKANYM 297

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P F   E +     EE+    +   GL  R   G           R++ ++E+ VI  M 
Sbjct: 298  PNFPVPEGE----NEESWFVKEVERGLHYRFPNGV------PDKVREQAEYEVGVITSMG 347

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD++PL   L+FERFLNPDR
Sbjct: 348  FPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLNPLNHDLIFERFLNPDR 407

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPDFD+DF   RR EVI YV  KYG ++VAQI+TFG+++AK AL+D  R +  PYS  
Sbjct: 408  VSMPDFDVDFDDRRRAEVIDYVTEKYGEDKVAQIVTFGTIKAKQALKDASRVMDQPYSVG 467

Query: 473  DRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDR--LLEISQKLEGL 521
            +RL K +P D     +          +  ++    R             + E ++ LEGL
Sbjct: 468  ERLTKAMPPDVMGKNIALANVYNPEDKRYSEAGDLRALIEDPVDKIYGEVFETAKGLEGL 527

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R    HAAG+++  + L+ ++P+ R       +TQF+    E  GLIK DFLGL+ LT+
Sbjct: 528  KRQWGVHAAGVIMSSKNLTDVIPVMRREADGQVITQFDYPTCEGLGLIKMDFLGLRNLTI 587

Query: 582  LQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +LD +   RG+++DL  +  DD E+Y LL    TLG+FQL+   MR  L+ M+P+  
Sbjct: 588  ISDALDNVKMNRGIEIDLENLEVDDKESYRLLARGDTLGVFQLDGGPMRSLLKLMEPEEF 647

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQ 694
            E I A+++LYRPGP+  ++   Y  RKNGK++I  IHP ++      L  T G+I+YQEQ
Sbjct: 648  EHISAVLALYRPGPMGANSHTNYALRKNGKQEIQPIHPELEEPLAEILDTTYGLIVYQEQ 707

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VM IAQ ++ Y+L EAD+LRRAMGKK K E+DKQ E F  G   NG S+     ++++L 
Sbjct: 708  VMAIAQKVANYTLGEADLLRRAMGKKKKAELDKQYEAFHDGMISNGYSEGAVKALWDILL 767

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+DY FNK+H AAY ++SY TA++K HYP E++AA +T   DN +K+  +  + R   I
Sbjct: 768  PFSDYAFNKAHTAAYGLVSYWTAYLKAHYPQEYMAALLTSVGDNKDKLALYLNECRAMGI 827

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVD 873
             ++PP VN   + F      I + + AI+ VG      ++ A  +   F+S  DF  +V 
Sbjct: 828  TVLPPDVNESTLTFAPVGKDIRFGMGAIRNVGANVVDGMIAAREEKGHFESFNDFLKKVP 887

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----H 929
                N+R +ESL+ AGA D   ++R  L    ++    A  V++       ++F      
Sbjct: 888  LVVCNKRTIESLIKAGAFDELKHTRRSLSLVHESAVDAAVSVKRKEAAGQFDLFGSLGMD 947

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA- 988
            +       +T+          +   E+ +LG Y S HPL   +  L         + +  
Sbjct: 948  DALGDDLSVTVPDIPDWERREKLNFEREMLGLYVSDHPLRGLERALSDAATASVHDIIDE 1007

Query: 989  ---TIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAK-EYEANFF 1032
                  G  + +A M+ S  ++  +  G++   V   + +       FF
Sbjct: 1008 DSHIRDGEVVTIAGMLTSVSRRIAKSSGNQYASVELEDSSGATLTVMFF 1056


>gi|71900814|ref|ZP_00682933.1| DNA polymerase III alpha subunit [Xylella fastidiosa Ann-1]
 gi|71729435|gb|EAO31547.1| DNA polymerase III alpha subunit [Xylella fastidiosa Ann-1]
          Length = 1193

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1078 (37%), Positives = 621/1078 (57%), Gaps = 74/1078 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             + SFVHL +H+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  L I   ++                + LL     GY  L
Sbjct: 62   FALIKFYKAAETVGIKPISGADLLIAEPEHPPWG------------MTLLCRDHAGYLNL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
             +L+SR +L     +  V +   W+++   + L  L G       + F    + +AE++L
Sbjct: 110  SQLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIG-RHSLAGQLFAKGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R     +       +Q+A    +P++A+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + +A   ++    RPR  +   YL++  EM ++F+D+P+AL+NT  +A+RC+  +++  
Sbjct: 228  RVCIASGRMLDDPKRPRTYSEQQYLRSSEEMATLFADIPDALDNTRTLAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +         +  ++ +R ++  GLE RL +  +A G   +DY  RL+FEL+ I 
Sbjct: 288  YFLPNYPVPN----DETLDSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M FSGYFLIVADFIQW K+  IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC +RRDEVI YV  KYG ERV+QIIT+G++ AKA +RDVGR L  PY
Sbjct: 404  PERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADD------SRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIP+     +       +      +   +   A+  V  LL ++++LE L R
Sbjct: 464  GLVDSVAKLIPSTLGITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTR 523

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PL++  P++ +   +     PVTQF+   +E+ GL+KFDFLGL+TL
Sbjct: 524  NAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTL 583

Query: 580  TLLQKSLDFLAQRGVKVDLSLI-----PFDDHETY-HLLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  + +R  +  +  +     P DD  TY  +  +  T  +FQ ESSGMR+ L+
Sbjct: 584  TIIDWAVKAINKRHARACIDPVDITALPLDDLPTYKDIFASGNTSAVFQFESSGMRRLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +  RK+G ++ +   P    +LK+T G+++YQE
Sbjct: 644  DARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQE 703

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K G+    A  IF+L+
Sbjct: 704  QVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLM 763

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  +AR  N
Sbjct: 764  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNLN 823

Query: 814  IQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
            ++++ P++N     F+    + I Y L AIKGVG +    I++      P+ SL DFC+R
Sbjct: 824  LKVLRPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCTR 883

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-E 930
            V S KLNRR LE+++ AGALD  G +R  ++  L  + K  + + + R +   ++F + +
Sbjct: 884  VTSAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNAD 943

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE----- 985
             GT + ++ L +      +     E+  LG YFSGHP D Y+  ++++            
Sbjct: 944  PGTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALER 1003

Query: 986  -SVATIRGN----------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +  RGN          N  LA +VVS ++    KG    +V   +     E + F
Sbjct: 1004 ILSSQQRGNGEKRTWQPEVNTILAGLVVSVRR----KGDSQVFVQLEDGRGRIECSAF 1057


>gi|313901726|ref|ZP_07835155.1| DNA polymerase III, alpha subunit [Thermaerobacter subterraneus DSM
            13965]
 gi|313468014|gb|EFR63499.1| DNA polymerase III, alpha subunit [Thermaerobacter subterraneus DSM
            13965]
          Length = 1162

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/1091 (30%), Positives = 521/1091 (47%), Gaps = 93/1091 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  HS+YS L+GA  +  ++++ AA   PA+A+TD +N+  A+EF + A AAGI+PI
Sbjct: 2    FVHLHCHSAYSFLDGASPVQALVERAAALGMPALALTDHDNVAGAVEFDRAARAAGIKPI 61

Query: 71   IGCQLDIDMQD----------------------------------------------NLK 84
             G ++ + + +                                                 
Sbjct: 62   QGAEVTLLLDEPAGPAGVRPARPRPAAGAGPGGARPAGGGLGTGGKPGGGGPGGPGDAAP 121

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE------ 138
                   P P    +VLL +  +GY RL  L++R +L D+ + S  +  + L E      
Sbjct: 122  RPAAEGRPEPVTAHLVLLATGPQGYARLCRLLTRAHL-DRPRGSPALPWTVLLEEVAPGG 180

Query: 139  --IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH-RGYDR 194
              +   GLI L+G   GP+ +A        A +R    +  FG +  ++ LQ      +R
Sbjct: 181  EPLAGHGLIALSGCRQGPVLQALLRGDRATALERARQLRDAFGRENFFLELQGGWLPGNR 240

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHY 253
                 +  LA    + LVATN+  + + + +  HD+L  V     V +    R    D+ 
Sbjct: 241  ALNRALADLAEHLGVGLVATNDVHYATRDRFAVHDLLACVRLGIPVDEPHPQRHLNADND 300

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            LK+   M  +F+  P+ALE T+ IA RC+  L       P F            E  LR 
Sbjct: 301  LKSPRAMARMFAGYPQALEATLAIAERCAPALPEGGVPRPAFPLPPGVR----AEAYLRE 356

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            +   G            G      RQRL+ EL++I +++ + YFL+V D  ++A++  I 
Sbjct: 357  QVERGALW-------RYGRITPRIRQRLEHELSIIEKLQLADYFLLVWDVARYARQQGIR 409

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
               GRGS A S  AY L ITD+D +   LLFERFL+ +R   PD DIDF    RD+V  Y
Sbjct: 410  CA-GRGSAADSAVAYCLGITDVDAIERGLLFERFLSLERAEQPDIDIDFDARYRDQVADY 468

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            V+ +YG E VA + T+ +  A+ ALRD G+ L  P + +DR+ K +P   +  +  +A+A
Sbjct: 469  VEQRYGPEHVATVCTYQTYHARGALRDFGKVLGFPEAVIDRIAKRVPYYLSRQL-GRALA 527

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            +    R+  L    + RL+ + +   GL RH  TH  G+VI  RPLS L P+ R      
Sbjct: 528  EVPELRDLDLPRERLKRLVALCEAAAGLPRHMGTHLGGLVISRRPLSDLSPLQR-SAKGR 586

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT 613
             + QF+ + +E+ GL+K D L L+TL  +++++  + +R    D   IP DD  TY LL 
Sbjct: 587  RILQFDKRGVEELGLVKLDLLSLRTLGAVEEAVRVIRRRNPSFDYDHIPLDDRATYRLLG 646

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK--EKI 671
            T  T+G FQLES   R     ++P+ +ED++A V++ RPGPI   +V       +  E +
Sbjct: 647  TGETVGAFQLESPAQRALQPRLRPENLEDVVASVAIIRPGPIKGDMVEPFLARRRGQEPV 706

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKE 730
              +HP ++P+L++T GV+++QEQV++IA  ++G++  EAD LRR M   +  EEM+    
Sbjct: 707  TYLHPKLEPILRKTWGVVLFQEQVIEIATAIAGFTPGEADRLRRVMTHARSPEEMEDIGR 766

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+  A + G+ + +A  IF ++  +A YGF ++HAAA+ V +Y+TA++  HYP E+ AA
Sbjct: 767  HFLRRARQQGVGEEVAQAIFRMIQGYASYGFCEAHAAAFGVTAYKTAYLLAHYPAEWYAA 826

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++L+            +A +  IQI+P  +NT  V F      I   L A+KG+G   A
Sbjct: 827  LLSLQPMGYYPPNTLGVEAARRGIQILPLDINTSQVAFTATPGTIRIGLRAVKGLGDEPA 886

Query: 851  RHIMEASA-DKPFDSLEDFCSRVDSKK-------LNRRVLESLVFAGALDCFGYSRMQLL 902
              I+       PF  L DF  R+ ++        L+R  + +L+ AGA D    +R  LL
Sbjct: 887  AAIVAERERGGPFRHLMDFLLRLAARGGTAAGPVLDREQVAALIRAGAFDGLHANRRALL 946

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              LD     A+           ++       +S  +     +      ++  E+ VLG  
Sbjct: 947  WGLDEALATARQ-----AAGGGDLAQGLAAAWSPPV----VADFPDLEKWAMEREVLGID 997

Query: 963  F-SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
                H L + + +L   G +          G  +R A + V   +  TR G  I ++T  
Sbjct: 998  VHRRHLLAMLREVLEARGYRPAAALRGLPPGVPVRAAGIPVRPHRPPTRSGRVIVFLTLE 1057

Query: 1022 EPAKEYEANFF 1032
            +     +   F
Sbjct: 1058 DETGLVDVTVF 1068


>gi|311113352|ref|YP_003984574.1| DNA-directed DNA polymerase III subunit alpha [Rothia dentocariosa
            ATCC 17931]
 gi|310944846|gb|ADP41140.1| DNA-directed DNA polymerase III alpha subunit [Rothia dentocariosa
            ATCC 17931]
          Length = 1180

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1069 (34%), Positives = 547/1069 (51%), Gaps = 54/1069 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K   F HL VH+ YS+L+GA  L ++          ++A +D   LF A +F ++A A
Sbjct: 1    MAK-KGFAHLHVHTEYSMLDGAARLGDLFQYARELGMDSMATSDHGFLFGAFDFWRQAKA 59

Query: 65   AGIQPIIGCQLDIDMQDNL---------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
              I+PIIG +  +    +            +    +       + +   T EG   L   
Sbjct: 60   NDIKPIIGVEAYLTPGTHRTDRSRVRWGDGSRDDVSGGGAYTHMTMWAETTEGMHNLFRA 119

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S   L  Q     R+    LQ   ++GLI  TG  SG I         Q A      F+
Sbjct: 120  SSVASLEGQLY-KPRMDREVLQTY-SKGLIATTGCPSGEIQTRLRLGQYQEAVAAAAEFR 177

Query: 176  KLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             +FG D  Y  +  H    +R  ++ + +LA    LP VATN+  +  +ED+ AH  L+ 
Sbjct: 178  DIFGKDNFYCEVMDHGLDIERNVQADLHRLAKELNLPFVATNDLHYTRQEDHTAHAALLC 237

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            V   + ++   R +    + YL++  EM  IF D+P A ENT+EIA RC+      A  +
Sbjct: 238  VQSGSTLTDPKRFKFDADNFYLRSPEEMYQIFGDVPGACENTLEIAERCNVEFNTKANYM 297

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P F   E +     EE+    +   GL  R   G           R++ ++E+ VI  M 
Sbjct: 298  PNFPVPEGE----NEESWFVKEVERGLHYRFPNGV------PDKVREQAEYEVGVITSMG 347

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFL+VADFI WAK N I VGPGRGSGAGS+ AYA+ ITD++PL   L+FERFLNPDR
Sbjct: 348  FPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYAMRITDLNPLNHDLIFERFLNPDR 407

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPDFD+DF   RR EVI YV  KYG ++VAQI+TFG+++AK AL+D  R +  PYS  
Sbjct: 408  VSMPDFDVDFDDRRRAEVIDYVTEKYGEDKVAQIVTFGTIKAKQALKDASRVMDQPYSVG 467

Query: 473  DRLCKLIPND-PAHPV--------SLQAIADDSRFREARLADPSVDR--LLEISQKLEGL 521
            +RL K +P D     +          +  ++    R             + E ++ LEGL
Sbjct: 468  ERLTKAMPPDVMGKNIALANVYNPEDKRYSEAGDLRALIEDPVDKIYGEVFETAKGLEGL 527

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R    HAAG+++  + L+ ++P+ R       +TQF+    E  GLIK DFLGL+ LT+
Sbjct: 528  KRQWGVHAAGVIMSSKNLTDVIPVMRREADGQVITQFDYPTCEGLGLIKMDFLGLRNLTI 587

Query: 582  LQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +LD +   RG+++DL  +  DD E+Y LL    TLG+FQL+   MR  L+ M+P+  
Sbjct: 588  ISDALDNVKMNRGIEIDLENLEVDDKESYRLLARGDTLGVFQLDGGPMRSLLKLMEPEEF 647

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQ 694
            E I A+++LYRPGP+  ++   Y  RKNGK++I  IHP ++      L  T G+I+YQEQ
Sbjct: 648  EHISAVLALYRPGPMGANSHTNYALRKNGKQEIQPIHPELEEPLAEILDTTYGLIVYQEQ 707

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VM IAQ ++ Y+L EAD+LRRAMGKK K E+DKQ E F  G   NG S+     ++++L 
Sbjct: 708  VMAIAQKVANYTLGEADLLRRAMGKKKKAELDKQYEAFHDGMISNGYSEGAVKALWDILL 767

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+DY FNK+H AAY ++SY TA++K HYP E++AA +T   DN +K+  +  + R   I
Sbjct: 768  PFSDYAFNKAHTAAYGLVSYWTAYLKAHYPQEYMAALLTSVGDNKDKLALYLNECRAMGI 827

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVD 873
             ++PP VN   + F      I + + AI+ VG      ++ A  +   F+S  DF  +V 
Sbjct: 828  TVLPPDVNESTLTFAPVGKDIRFGMGAIRNVGANVVDGMIAAREEKGHFESFNDFLKKVP 887

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----H 929
                N+R +ESL+ AGA D   ++R  L    ++    A  V++       ++F      
Sbjct: 888  LVVCNKRTIESLIKAGAFDELKHTRRSLSLVHESAVDAAVSVKRKEAAGQFDLFGSLGMD 947

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA- 988
            +       +T+          +   E+ +LG Y S HPL   +  L         + +  
Sbjct: 948  DALGDDLSVTVPDIPDWERREKLNFEREMLGLYVSDHPLRGLERALSDAATASVHDIIDE 1007

Query: 989  ---TIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAK-EYEANFF 1032
                  G  + +A M+ S  ++  +  G++   V   + +       FF
Sbjct: 1008 DSHIRDGEVVTIAGMLTSVSRRIAKSSGNQYASVELEDSSGATLTVMFF 1056


>gi|85374223|ref|YP_458285.1| DNA polymerase III alpha subunit [Erythrobacter litoralis HTCC2594]
 gi|84787306|gb|ABC63488.1| DNA polymerase III alpha subunit [Erythrobacter litoralis HTCC2594]
          Length = 1163

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 452/1045 (43%), Positives = 624/1045 (59%), Gaps = 36/1045 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P FV L+V SSYS+LEGA+    +         PAIAI D N L+ A+ F+     
Sbjct: 1    MAFAP-FVPLRVLSSYSMLEGAIDPKALAKLAKERGFPAIAICDRNGLYGAVAFAGACRD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GIQPIIG  + +            +     +  + L      GY  L  LVS+ +L   
Sbjct: 60   EGIQPIIGALVGVA-----------RPGSDAIDHLPLYAQDEAGYLNLCHLVSKAHLERP 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    + L    +  TEGLI LTG S G + +         AE      + LF +RLYV
Sbjct: 109  VELVPHVSLDDF-DGRTEGLIALTGASEGGVTQLLAEGQKDHAEAYCDRLQALFPERLYV 167

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     ++  E  +V LAY  +LPLVATN + F     ++AHD ++ +A S  + ++
Sbjct: 168  ELSRRGNAVEQAAEEALVDLAYARDLPLVATNPANFAEPGFHKAHDAMLCIAGSYKIHEE 227

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DRPR     ++K+   M  IF DLPEA  NT+ IA+RC++            I       
Sbjct: 228  DRPRTDQQAWVKSDRMMGEIFEDLPEATANTLVIAQRCAYAPP-----YRDPILPSLAGD 282

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             + EE  LR  +  GLE RL           ++Y +RLD+E+ +I RM F GYFLIVADF
Sbjct: 283  LEGEERMLRELSTKGLEKRLEPYEDLSDEDREEYFERLDYEIGIINRMGFPGYFLIVADF 342

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK + IPVGPGRGSGAGS+ A+ALTITD+DP+R  LLFERFLNP+R+SMPDFDIDFC
Sbjct: 343  IQWAKDHGIPVGPGRGSGAGSLVAWALTITDLDPIRLGLLFERFLNPERVSMPDFDIDFC 402

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            + RR EVIRYVQ +YGH++VAQIITFG L+A+A LRDVGR +   Y++ DRLCK++PN P
Sbjct: 403  ETRRGEVIRYVQERYGHDKVAQIITFGKLKARAVLRDVGRIVDYGYNRTDRLCKMVPNHP 462

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              P +  +A+   + F+     D     L++++ +LEGL R++STHAAG+VIGDRPLSQL
Sbjct: 463  TDPWTLPRALNGSAEFKAEYSNDNDTKALIDLAMQLEGLPRNSSTHAAGVVIGDRPLSQL 522

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD RSD+PVTQF+MK +E +GL+KFDFLGLKTL++LQK++D L +RG+ VDL  + 
Sbjct: 523  VPLYRDPRSDMPVTQFDMKHVESSGLVKFDFLGLKTLSVLQKAVDLLEKRGIDVDLGALA 582

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +DD   Y L+ +  T+G+FQLES GMR+ L  ++P   EDIIALVSLYRPGP+DNI ++ 
Sbjct: 583  WDDPAVYELMKSGNTVGVFQLESEGMRRTLTAVKPTKFEDIIALVSLYRPGPMDNIPLFG 642

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G E I   HP ++ +L ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKK +
Sbjct: 643  KRKAGLEPIEYPHPKLEEILAETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKNQ 702

Query: 723  EEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             EMDKQ+  F+   A  + I    A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K 
Sbjct: 703  AEMDKQRAIFVEGCAKVSDIDADKANELFDLINKFAGYGFNKSHAAAYALLAYQTAWLKA 762

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQF-----NIQIMPPSVNTPCVDFKVG----D 832
            HYP EF AASM  +M   EK+  F  DAR++      I + PP +N    +F V      
Sbjct: 763  HYPEEFYAASMCFDMHQSEKLAVFVDDARRYPLVEGGIVVAPPDINASEAEFTVERTDDG 822

Query: 833  NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              + Y+LA I+ VG      I+    A+  F+SL D   R+    +N R LE+L+ AGAL
Sbjct: 823  YAVRYALAGIRNVGEKAMDAIVREREANGVFESLGDLFDRLPQGAMNSRQLEALIAAGAL 882

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R +L  ++D +   A    + RT+  E +F  +     D + L+     +   R
Sbjct: 883  DGLEPNRGKLAANVDLLLATADAAIRERTSGQEALFGGDLAA-EDTLRLKDAEDWDRPTR 941

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV--ATIRG--NNIRLAAMVVSKQQK 1007
               E+   GFYFS HP++ ++ +    G + Y   +      G  +   +AAMV      
Sbjct: 942  MAKERENFGFYFSEHPVEHFRDVASANGARPYASLMTGGAPAGGRSKAMMAAMVEKVNIG 1001

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             TR+G++     FS+ + ++ A  F
Sbjct: 1002 TTRRGAQFVRADFSDSSGQFSAACF 1026


>gi|229087161|ref|ZP_04219310.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-44]
 gi|228696133|gb|EEL48969.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-44]
          Length = 1109

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1027 (35%), Positives = 582/1027 (56%), Gaps = 48/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HLQ  + +SLL+ A  ++ I+ +       ++AITD N ++  + F +     GIQPI
Sbjct: 3    FAHLQCQTVFSLLKSACKIDEIVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I   +                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSGEE-----------EGTYPLVLLAENEIGYQNLLKISSAIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GL+ ++ G  G I++       ++AE+    ++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLVAISPGKDGEIEQLLLQGRDELAEEVARAYQNMFG-SFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++ Q A    +P+VATN+  ++++ D    + L++V   T ++  DRPR  
Sbjct: 166  IQDELFLQEKLPQFASEIGIPMVATNDVRYVNQSDALVQECLLSVQGGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+ +EM ++FS   EAL+NTV IA RC   +      LP+F         +  +
Sbjct: 226  TDQYYLKSSAEMGALFSHEEEALQNTVRIAERCHVEIPFQVNQLPKFPVP----SNETSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+                +R+RL+ EL VI+RM FS YFLIV DF+++A 
Sbjct: 282  AYLRRICDEGLQK-------RYAVIETVHRERLNHELAVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +++I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  EHDILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P  ++D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGPLRVAQIVTFGTLAAKAAIRDIARVMGLPPREIDIFSKLIPSKIGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                      RE    +   +R+ EI++++EG+ RH S HAAG+++   PL+  V +  +
Sbjct: 455  EAYEESVP-LREFVQGNLLHERVFEIAKRVEGMPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+  + +E+ GL+K DFLGL+ LTLL+  L   + + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPAEVLEELGLLKMDFLGLRNLTLLENILDFIVTKTGKQIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L  ++P+  EDI+A+ +LYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRSLKPNEFEDIVAVNALYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K +I  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK +E +D+
Sbjct: 633  KCQIQYLHPDLKPILENTYGVIVYQEQIMQIASRLAGFSLGEADLLRRAVSKKNREILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +YP+EF
Sbjct: 693  ERKHFVQGCLRNGYDETAAEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYPLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++   +++PPS++    +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFRVLPPSLHRSSYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E     PF  L +FC R+ +K +  R LE+ ++AG  D F  SR  L  S+  
Sbjct: 813  ATVTAVIEERERNPFQDLFEFCLRMPAKFVTERNLEAFIWAGCFDDFQVSRTTLFNSMKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA            ++          K    +    +   +  NE+  LGFY S +P
Sbjct: 873  ALEYA------------SLARELGEESVPKSVYVQGEELSFIEQLNNEKEALGFYLSSYP 920

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  +++++ I    +  A  +   + R    +   +  +T+K  ++ ++TF +   E
Sbjct: 921  TAQYAKLVKELEIPSIAQ--AMRQKRKVQRAIVYITGVKVIRTKKMQKMAFITFCDQNDE 978

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 979  MEAVVFP 985


>gi|319953453|ref|YP_004164720.1| DNA polymerase iii, alpha subunit [Cellulophaga algicola DSM 14237]
 gi|319422113|gb|ADV49222.1| DNA polymerase III, alpha subunit [Cellulophaga algicola DSM 14237]
          Length = 1479

 Score =  692 bits (1786), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/1103 (31%), Positives = 543/1103 (49%), Gaps = 96/1103 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------- 60
            F HL  H+ +S+L+  +S+  ++   A  + PA+A+TD  N+  A  F            
Sbjct: 261  FSHLHNHTQFSILQSTISIPALISAAAKAKMPAVAMTDHANMMGAFHFVSGVINHNKGVV 320

Query: 61   ----------KACAAG-IQ-----------------PIIGCQLDIDMQDNLKMTNQGKTP 92
                      +A   G ++                 PIIGC+  +         +  K+ 
Sbjct: 321  SRNEENLIRFEATKNGTLKEGEEALEELPEPEIEITPIIGCEFQVCED------HTNKSQ 374

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  IV+L  T +GY  L ++ S  + +       RI    +++   E +I+LTG   
Sbjct: 375  KDNGYQIVMLAKTKKGYLNLAKMSSIAF-VSGKYYVPRIDRKVVEQY-KEDIIVLTGNLY 432

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPL 211
            G +           AE+ LL +K+ FG  LY+ + RH   D  R +Q ++Q A  H++ L
Sbjct: 433  GEVPSKVLNVGENQAEEALLWWKETFGADLYIEIMRHGQEDEDRANQVLIQFAKKHDVKL 492

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIF 264
            +ATNN+ ++ +E+  AHD+L+ V      +                ++Y K+  +M  +F
Sbjct: 493  LATNNTYYVDKENAHAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSSDQMKELF 552

Query: 265  SDLPEALENTVEIARRCSFI--------LQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             D+PEA+ N  E+  +                 P   +F E + D  ++ E   LR+   
Sbjct: 553  KDIPEAIINIQEVVDKVETFTLARDVLLPAFDIPEEFQFAEDKLDKGKRGENKFLRHITY 612

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             G +          G       +RLDFEL VI +  + GYFLIV DFI+ A+  ++ VGP
Sbjct: 613  EGAKK-------RYGEITPAIDERLDFELKVIEKTGYPGYFLIVEDFIRAARAMDVSVGP 665

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGS AGS  AY L IT++DP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV N
Sbjct: 666  GRGSAAGSAVAYCLWITNLDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVIN 725

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA------------ 484
            KYG  +VAQIIT+G++ AK+A+RD  RAL +P    DR+ KLIP+               
Sbjct: 726  KYGANQVAQIITYGTMAAKSAIRDTARALDLPLQDSDRMAKLIPDMSKLKKIIGVDEKIL 785

Query: 485  -HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                  + +   +        D      L  +  LEG  R+   HA G++I    +++ V
Sbjct: 786  KSKFRAEDLIKINELLAISEGDGLEAETLNQAYILEGSVRNTGIHACGVIITPDDITKFV 845

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP 602
            P+     S++  TQF+   +E AGL+K DFLGLKTLTL++ ++  +  + GV +D    P
Sbjct: 846  PVALAKDSEMYCTQFDNSVVEDAGLLKMDFLGLKTLTLIKDTVKIVKAKHGVTLDPENFP 905

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD +TY L     T+G+FQ ES GM++ +  ++P    D+IA+ +LYRPGP++ I  + 
Sbjct: 906  LDDVKTYELFQRGETVGVFQYESPGMQKHMRALKPTVFADLIAMNALYRPGPMEYIPSFI 965

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK+G E+IV      +  L ET G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK K
Sbjct: 966  ARKHGTEEIVYDLDANEEYLAETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQK 1025

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              +DK K +FI  AS  G +      I++    FA Y FNKSH+  YA I+YQTA+ K H
Sbjct: 1026 YVLDKMKPKFIEQASAKGHAADKLEKIWKDWEAFAAYAFNKSHSTCYAWIAYQTAYCKAH 1085

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAA 841
            YP E++AA ++  M++++++  F ++ ++  + ++ P VN     F V D   + + + A
Sbjct: 1086 YPAEYMAAVLSNNMNDIKQVTFFMEECKRMGLDVLGPDVNESYYKFAVNDAGAVRFGMGA 1145

Query: 842  IKGVGTTTARHIMEASAD--KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSR 898
            +KGVG      I+E   D   PF S+ DF  R+D +  N++  ESL  AG  D FG   R
Sbjct: 1146 VKGVGRGAVETIVEHRKDEEGPFKSVFDFAKRIDLRAANKKAFESLAVAGGFDSFGDTHR 1205

Query: 899  MQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
             Q   +       L+   KY    +++  +   ++F         +  +       +  +
Sbjct: 1206 AQYFHAEGDGVTFLEKTIKYGAKFQESENSSQVSLFGEASDVQIPEPEVPPCEEWGTMEK 1265

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKT 1009
               E+ V+G Y SGHPLD +K  ++                    +  A ++   Q + +
Sbjct: 1266 LRREKEVVGIYISGHPLDDFKSEVKSFCNASLSNLNDLESIVNREVSFAGVIADVQHRVS 1325

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
            + G      T  +    +E   F
Sbjct: 1326 KNGKGWAMFTMEDYTDTFEFRIF 1348


>gi|330444096|ref|YP_004377082.1| DNA polymerase III subunit alpha [Chlamydophila pecorum E58]
 gi|328807206|gb|AEB41379.1| DNA polymerase III alpha subunit [Chlamydophila pecorum E58]
          Length = 1241

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1076 (33%), Positives = 573/1076 (53%), Gaps = 59/1076 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S++ L  HS YS+L+    + +++ +  A   PAIA+TD  NLF A++F +      I+P
Sbjct: 2    SWIPLHCHSQYSILDATCPIKDLVAQAKAYDIPAIALTDHGNLFGAIDFYKTCVQQEIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC+  I          + ++       ++LL    +GY+ L  L S  ++ +      
Sbjct: 62   ILGCECYIAPGSRFDKKKEKRSRV--AHHLILLCKNEQGYRNLCLLSSLAFI-EGFYYVP 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI    L++  +EGL+ L+   S  +  A    S +  EK L  +++LF +  +  +Q H
Sbjct: 119  RIDKELLKK-HSEGLVCLSACLSSSVSEAALE-SEEALEKELRWYQELFKENYFSEVQLH 176

Query: 190  RGYDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +  +                          + V++++    +P VATN+  +L  ED++A
Sbjct: 177  KMSEEKIASLPEEWLKQEYYNFIDKQTRVNTAVLEVSKRLGIPSVATNDIHYLHPEDWQA 236

Query: 228  HDVLMAVAHSTVVSQKDRPRV----------TPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            H++L+ +     +    +             + + Y K+  +M+ +F+D+PE + NT+E+
Sbjct: 237  HEILLNIQSGETIRTAKQNTYIPNPKRKTYSSREFYFKSPQQMLELFADVPEVIANTLEV 296

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEEN--------ELRNKAVAGLEVRLAQ---- 325
            A+ C           P ++ +     +   E          LR     GL     +    
Sbjct: 297  AKLCDVHFDFSKKHYPIYLPETLKTKEHYTEQDRYEASALFLRQLCEKGLSKYTPEVLAH 356

Query: 326  --GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                       +  +QR++ E+++I       Y LIV D I WAK +NIPVGPGRGSGAG
Sbjct: 357  IAKKFPNQDPLELVKQRMEMEMSIIIPKGMCDYLLIVWDIIHWAKAHNIPVGPGRGSGAG 416

Query: 384  SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
            SV  + L IT+I+P+RF L FERF+NP+R+S PD DID C + R+EVI Y   K+G + V
Sbjct: 417  SVMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMEGREEVINYAIEKHGKDNV 476

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
            AQIITFG+++AK A++DVGR L MP S+V+ + K IP   A     +++  D    +  +
Sbjct: 477  AQIITFGTMKAKMAIKDVGRTLDMPLSKVNTIAKHIPELNA--TLAKSLETDPDLHQLYI 534

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWI 563
             D    ++++++ +LEG  R+   HAAG++I   PL+  +P+     S +  TQF+MK  
Sbjct: 535  DDVEAAQVIDMAMRLEGSIRNTGVHAAGVIICGEPLTNHIPVCISKDSSMITTQFSMKPA 594

Query: 564  EKAGLIKFDFLGLKTLTLLQ-KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            E  G++K D LGLKTLT +         +   ++ +  +P DD  T+ LL    T+G+FQ
Sbjct: 595  ESVGMLKVDLLGLKTLTSIHLAMSAIYQKTQKRLHMETLPLDDKMTFSLLHQGKTMGVFQ 654

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
            +ES GM++  + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++ +L
Sbjct: 655  MESKGMQELAKNLRPDSFEEIIAICALYRPGPMDMIPSFINRKHGKENIDYDHPLMESIL 714

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            KET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  ++M +++ +F   A+ NGI 
Sbjct: 715  KETYGIMVYQEQVMQIAGALANYSLGEGDVLRRAMGKKDHQQMVQERSKFCERAANNGID 774

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
              IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D+VEK+
Sbjct: 775  PDIATIIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPQEWLAALLTCDSDDVEKV 834

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKP 861
             K  ++A+  NI I+PP +N     F   +  I ++L AIKGVG +   H+++      P
Sbjct: 835  GKLIREAQSMNIPILPPHINISSNHFVATNEGIRFALGAIKGVGKSFIEHLVKERELHGP 894

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + S++DF  R +  K++++ +ESLV AG  DCF  +R   L SLD +       +K    
Sbjct: 895  YRSIQDFIQRSNFTKISKKNMESLVDAGCFDCFEPNRDLALASLDALYNTVSKEKKEAAT 954

Query: 922  KHENIFAHEKGTFSDKITLEKFSV---ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
                 F+ +     + + +               + E+ +LG Y + HP+D ++    ++
Sbjct: 955  GVMTFFSLDSMHEQNPLPVAAPKDVVFRTKKELLKKEKELLGIYLTEHPMDAFRETFPRL 1014

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG-SRIGWVTFSEPAKEYEANFFP 1033
             +  + E      G  IR   ++     K + KG  +   +  S+    YE   +P
Sbjct: 1015 SVVPFGEFENLSHGAVIRTVFIIDKITTKFSSKGQKKFAILRVSDGMDSYELPVWP 1070


>gi|300933332|ref|ZP_07148588.1| DNA polymerase III subunit alpha [Corynebacterium resistens DSM
            45100]
          Length = 1189

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/1073 (28%), Positives = 511/1073 (47%), Gaps = 52/1073 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S SFVHL  H+ YS+L+G   ++ +  +      PA+ +TD  N+F A  F +   A
Sbjct: 1    MSGS-SFVHLHNHTEYSMLDGMAKVDMLAAEAKRQGMPAVGMTDHGNMFGADAFYRAMTA 59

Query: 65   AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            A I+PIIG +  I  +             +  +   +         ++   A G + L  
Sbjct: 60   ADIKPIIGIEAYIAPESRFNQNRVRWGNPEQKSDDVSASGAYLHQTMIAENATGLRNLFY 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   EG+I  TG  SG +           A +    +
Sbjct: 120  LSSLASYEGQLGKWPRMDAELIAE-HAEGIIATTGCPSGDVQTRLRLGQFDEALEAAAKW 178

Query: 175  KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++G D  ++ L  H    +R     ++++    +LP + TN+  ++ E    AH+V++
Sbjct: 179  QDIYGKDNFFLELMDHGLEIERRVREDLLEIGRRLDLPPLVTNDCHYVLESQAAAHEVML 238

Query: 233  AVAHSTVVSQK--------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
             V   + + +              T  +             ++P+  +NT+ +A R    
Sbjct: 239  CVQTGSTLDEPTLDEGGKRFAFSGTGYYLRTAEDLRAQWDKEVPKGCDNTLWVAERVQDY 298

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
             +V        +        +     L ++ + GLE R     +       +Y  R  +E
Sbjct: 299  SEVWEEHPFDRMPIADVPEGETPTTWLTHEVMKGLEDRFPGKPV-----PTEYIDRAKYE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            + VI    +  YFLIVA+ I++A+   I VGPGRGS AGS+ AYALTIT+IDP+   LLF
Sbjct: 354  IEVIDMKGYPSYFLIVAELIKYARSVGIRVGPGRGSAAGSLVAYALTITNIDPMEHGLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K A++D  RA
Sbjct: 414  ERFLNPERPSAPDIDIDFDDRRRGEMIRYASDRWGEDKIAQVITFGTVKTKQAIKDSARA 473

Query: 465  LQMPYSQVDR-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
                                 + K IP         +   + +  R     DP V+++ +
Sbjct: 474  HYGQAGFQMADRITKALPPAIMAKDIPLSGIMDPEHERYNEAAEVRNLIETDPDVNKIYQ 533

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             ++ LEG+ R A  HA  +++   PL   +PM++  +    +T +     E  GL+K DF
Sbjct: 534  DARGLEGVVRQAGVHACAVIMSSVPLLDCIPMWKRKQDGALITGWPYPACEAIGLLKMDF 593

Query: 574  LGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL+ LT++  +L+ +   R   +DL  +  +D  TY LL    TLG+FQL+S GM++ L
Sbjct: 594  LGLRNLTVIGDALENIKANRDFDLDLENLSTEDEPTYELLARGETLGVFQLDSGGMQELL 653

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPM----LKETQ 686
            + M+P    DI+A ++LYRPGP+     +   +RKNG++ IV IHP ++      L+ET 
Sbjct: 654  KRMKPTGFNDIVAALALYRPGPMGVGAHWEYADRKNGRKPIVPIHPELEEPLQEILEETY 713

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+I+YQEQ+M+I+Q ++ Y+  +AD  R+AMGKK  E ++K+   F SG   NG S    
Sbjct: 714  GLIVYQEQIMKISQKVANYTAGQADGFRKAMGKKKPEVLEKEFVNFESGMKDNGFSDAAI 773

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++ +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K   + 
Sbjct: 774  KTLWDTILPFAGYAFNKSHAAGYGLVSFWTAYLKANYAPEYMAALLTSVADKKDKSAIYL 833

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSL 865
             D R   I+++ P VN     F+     I + L A++ VG      I+ +  +   F   
Sbjct: 834  ADCRHLGIRVLSPDVNESAYTFQSVGEDIRFGLGAVRNVGEEVVESIIRSREEKGAFKDF 893

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             D+  +++    ++RV ESL+ AGA D  G+ R  L+   ++        +K       +
Sbjct: 894  SDYLDKIEIAAASKRVTESLIKAGAFDSLGHPRKGLVLVHEDAVDAVTSTKKAAAKGQFD 953

Query: 926  IFAHEKGTFS-DKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
            +FA      +   +          +       E+ +LG Y SGHPLD ++  L       
Sbjct: 954  LFAGFGDDEAVGDVFRVDVPDQNWDRKHELAMERDMLGLYVSGHPLDGFEDALDAQVDTP 1013

Query: 983  YEESV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK-EYEANFF 1032
                +         +++  ++ S +++  R G+     T  +    + E   F
Sbjct: 1014 LTTVLSGELPNNREVKIGGIISSVERRVDRNGNPWVICTLEDQHGAQVELLVF 1066


>gi|227548935|ref|ZP_03978984.1| DNA polymerase III subunit alpha [Corynebacterium lipophiloflavum DSM
            44291]
 gi|227078960|gb|EEI16923.1| DNA polymerase III subunit alpha [Corynebacterium lipophiloflavum DSM
            44291]
          Length = 1186

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/1070 (29%), Positives = 515/1070 (48%), Gaps = 49/1070 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+ SFVHL  H+ +S+L+G   ++ + D++     PA+ +TD  N+F +  F ++   
Sbjct: 1    MAKNSSFVHLHNHTEFSMLDGMAKVDLLADEVIRQGMPAVGMTDHGNMFGSNAFYRRMVE 60

Query: 65   AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG++PIIG +  +  +                    +         +L   A G + L +
Sbjct: 61   AGVKPIIGIEAYMAPESRFNKKRVLWGTPDQKRDDVSASGAYLHQTMLAENATGLRNLFK 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L +      Q  +  R+    + E   +G+I  TG  SG +           A +    +
Sbjct: 121  LSTLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFDAALEAAAMW 179

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++G D  ++ L  H  + +R     ++++    ELP + TN+  ++ E    AH+ ++
Sbjct: 180  QDIYGKDNYFLELMDHGLHIERRVRDDLLKIGEILELPPLVTNDCHYVLESQAPAHEAML 239

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAP 290
             V     +  +DR +     Y    +  +    D       +NT+ IA R     ++   
Sbjct: 240  CVQTGKTMMDQDRFKFDGTGYYIKSAAQMREIWDSTVPDGCDNTLWIAERVGDYSELWEE 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +        +     LR + + GLE R            Q+Y  R ++E++VI  
Sbjct: 300  HPHDRMPVADVPEGETPTTWLRKEVMRGLEERFPG-----SEVPQEYIDRANYEVDVIDM 354

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I+ A++  I VGPGRGS AG++ AYALTIT+IDP+   LLFERFLNP
Sbjct: 355  KGYPSYFLIVAEIIKHAREIGIRVGPGRGSAAGALVAYALTITNIDPIEHGLLFERFLNP 414

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R S PD DIDF   RR E+I Y   ++G +++AQ+ITFG+++ K A++D  +       
Sbjct: 415  ERPSAPDIDIDFDDRRRGEMITYAAERWGEDKIAQVITFGTVKTKQAIKDAAKVWFGQPG 474

Query: 471  QVDR---LCKLIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLE 519
                      L P   A  +          +   + +  R     DP V ++ E ++ LE
Sbjct: 475  FQMADRINSALPPAIMAKDIPLVGITDPEHERYPEAAEVRTLIETDPDVAKIYETARGLE 534

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R A  HA  +++   PL + +PM++       +T ++    E  GL+K DFLGL+ L
Sbjct: 535  GVVRQAGVHACAVIMASVPLMEHIPMWKRPADGALITGWDYPACEAIGLLKMDFLGLRNL 594

Query: 580  TLLQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++  ++      RGV +DL  +  D+   Y LL+   TLG+FQL+S GM+  L+ M+P 
Sbjct: 595  TVIGDAMANIEKNRGVTIDLETLDIDNAAVYELLSRGDTLGVFQLDSGGMQDLLKRMKPT 654

Query: 639  CIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQ 692
               DI+A ++LYRPGP+       Y +RKNG++ I  IHP ++      L ET G+I+YQ
Sbjct: 655  GFNDIVASLALYRPGPMGVKAHEAYADRKNGRKPITPIHPELEEPLREILDETYGLIVYQ 714

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + ++  +F  G   NG SK     ++  
Sbjct: 715  EQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAEEYSKFSEGMFSNGFSKDAVDALWGT 774

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  FA Y FNKSHAA YA++SY TA++K +Y  E++AA +T   D  +K   +  D R  
Sbjct: 775  IEPFASYAFNKSHAAGYALVSYWTAYLKANYTAEYMAALLTSVGDKKDKSAIYLADCRHL 834

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSR 871
             I ++ P +N    +F    + I Y LAA++ VG      I E       F S  D+  +
Sbjct: 835  GISVLQPDINESEENFMAVGSDIRYGLAAVRNVGVEVVESIKETRRTKGAFTSFSDYLDK 894

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            ++    N+R+ ESL+ AGA D  G+ R  L+   ++        +K       ++FA   
Sbjct: 895  IELLACNKRITESLIKAGAFDSLGHPRKGLMLVQEDAVDSVLTTKKAADKGQFDLFASFA 954

Query: 932  GTFSDK-----ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            G    +     I +      +       E+ +LG Y SGHPLD Y+  +         + 
Sbjct: 955  GEDGAEQAVFTIDVPD-DEWDRKHTLALEREMLGLYVSGHPLDGYEEAIDAQTNTALTDI 1013

Query: 987  V--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
            +      G  + +  ++ S  ++ ++K GS    VT  +    + E   F
Sbjct: 1014 LSGEMRDGAEVTIGGLISSVDRRFSKKDGSPWAIVTIEDHHGAQVEVLMF 1063


>gi|289670237|ref|ZP_06491312.1| DNA polymerase III subunit alpha [Xanthomonas campestris pv.
            musacearum NCPPB4381]
          Length = 1195

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1081 (38%), Positives = 603/1081 (55%), Gaps = 77/1081 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 110  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRDSLAGRLFGEGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGRDGEERFNQFALNAAGVRGLPVVASNDVRFLYASDFNAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   Y+K+  EM ++F+D+P+A++NT  +A+RC+  +++  
Sbjct: 228  RVCISSGRVLDDPKRPRDYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   E     +  ++ +R+++  GL  RL +  +A G   QDY  RL+FEL+ I 
Sbjct: 288  YFLPAYPVPE----DETLDSWIRSQSRDGLAARLEKSPLAPGKTRQDYVDRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFLIVADFIQW K  +IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFPGYFLIVADFIQWGKNQSIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIPN     +                  +    +  V  L++++++LE L R
Sbjct: 464  GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLTR 523

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PLS+  P++ +   D     PVTQF+   +E  GL+KFDFLGL+TL
Sbjct: 524  NAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 583

Query: 580  TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  +  R        VD++ IP DD  TY  +  +  T  +FQ ESSGMR+ L+
Sbjct: 584  TIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFASGSTGAVFQFESSGMRRLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQE
Sbjct: 644  DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEAILKDTYGIMVYQE 703

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L+
Sbjct: 704  QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 763

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R   
Sbjct: 764  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823

Query: 814  IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871
            + + PP VN     F+    + I Y L AIKGVG      I+E      P+ +L DFC+R
Sbjct: 824  LTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGLGACEAIVEERQRGGPYTTLLDFCTR 883

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F    
Sbjct: 884  VGTAKLNRRTLEAMINAGAMDGLGKNRASLILQLPEVMKATEQMARERASGQNSLFGGPD 943

Query: 932  GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
             +    ++ L +            E+  LGFY SGHP D ++  +R++           +
Sbjct: 944  PSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVRELVGCDLGALEKIL 1003

Query: 991  RGNN-------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                                     LA  V+  ++    KG    +V   +     E + 
Sbjct: 1004 ASQQRGGGGGGDGEKRAWRPEVSAILAGQVIGVRR----KGDSQVFVQLEDGRGRVECSA 1059

Query: 1032 F 1032
            F
Sbjct: 1060 F 1060


>gi|327402957|ref|YP_004343795.1| DNA polymerase III subunit alpha [Fluviicola taffensis DSM 16823]
 gi|327318465|gb|AEA42957.1| DNA polymerase III, alpha subunit [Fluviicola taffensis DSM 16823]
          Length = 1463

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/1079 (31%), Positives = 546/1079 (50%), Gaps = 80/1079 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--------- 61
            FVHL  H+ +++L+  +++  ++ +      PA+A+TD  N+ +A  F +          
Sbjct: 258  FVHLHNHTQFTILQSTMNVKGLVKQAVKHNMPAVALTDIGNMMAAFHFEKAIAGINSEIE 317

Query: 62   -----ACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
                 A   G       + PIIGC++ +            K+       +V +    +GY
Sbjct: 318  AERKEAEENGQTISKKPLLPIIGCEMYVC------RDRLDKSVKDNGSLVVFIAKNKKGY 371

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
              LI+L S  +  +      RI  S +++   E LI+LTGG +G I         + AE+
Sbjct: 372  HNLIKLASISHT-EGMYYVPRIDKSAVEQYH-EDLIVLTGGLNGEIPSLLLNVGEKQAEE 429

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             L+ +K LFG+ LYV + RH   D  R  + +++LA  HE+ LVATNN+ + S ED   H
Sbjct: 430  ALVWWKNLFGEDLYVEIMRHGQEDENRVNASLIKLAQKHEVKLVATNNTFYGSREDANTH 489

Query: 229  DVLMAVAHS---TVVSQKDRPRV----TPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            D+L+ V      T    K R         ++Y K+  EM  +F DLPEA+E+  EI  + 
Sbjct: 490  DILLCVRDGEQVTTPKGKGRNFRFGLENEEYYFKSADEMKELFLDLPEAIESISEILGKI 549

Query: 282  SFILQ--------VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
                            P   +  +   D  ++ E   LR+    G   R  +        
Sbjct: 550  EHYPLAREVLLPAFDIPDEFKDPQDAIDGGKRGENAFLRHLTYEGAAKRYPE-------I 602

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
              + R RLDFEL  + +  + GYFLIV DF Q A+   + VGPGRGS AGS  AY   IT
Sbjct: 603  TDEIRDRLDFELATVEKTGYPGYFLIVQDFCQAARDMGVAVGPGRGSAAGSAVAYCTGIT 662

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            ++DP+ + LLFERFLNPDR+SMPD DIDF  + R  VI +V  KYG  +VAQIIT+G++ 
Sbjct: 663  NVDPIAYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVIDWVIEKYGSNQVAQIITYGTMA 722

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA---------------IADDSRF 498
            AK+++RD GR L +P    + L KLIP++                        +A+    
Sbjct: 723  AKSSIRDAGRVLDLPLMDTNLLAKLIPDNFTLDAIFNWEEPKLAEKLANSPQDLANVQEL 782

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
            R          ++L  +Q++EG  R+   HA G++I    ++  VP+     + +  TQF
Sbjct: 783  RAVSKGTDMRAQVLRQAQRIEGSVRNTGIHACGVIITPDDITNFVPVSLAKDTGMWCTQF 842

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGT 617
            +    E+AGL+K DFLGLKTLTL++ ++  + +R     D    P DD +TY L     T
Sbjct: 843  DNSVAEEAGLLKMDFLGLKTLTLIKDAVKNVKKRHDIDLDPDTFPIDDEKTYELFQRGET 902

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            +GIFQ ES GM++ +  ++P    D+IA+ +LYRPGP++ I  +  RKNG+++I      
Sbjct: 903  VGIFQYESPGMQKYMRELRPSVFADLIAMNALYRPGPLEYIPDFIKRKNGEQEIKYDLDA 962

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
             +  LKET G+ +YQEQVM ++Q L+G+S  +ADVLR+AMGKK +  +DK K +F+    
Sbjct: 963  CEEFLKETYGITVYQEQVMLLSQKLAGFSKGDADVLRKAMGKKQRYILDKMKPQFVEQGQ 1022

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            + G    +   I++    FA Y FNKSH+  YA I+YQTA++K +YP EF+A+ ++  ++
Sbjct: 1023 ERGHDPVVLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKANYPAEFMASVLSNNLN 1082

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEA 856
            ++ ++  F ++ R+  I+++ P VN    +F V     I + L  IKG+G+    +I+E 
Sbjct: 1083 DIAQVSFFMEECRRMGIEVLGPDVNESAYEFTVNQHGAIRFGLGGIKGLGSGPVENIIEN 1142

Query: 857  S-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQ-------SLDN 907
               +  F S+ +   R++ + +N++ +ES+ +AG  D F G  R Q           ++N
Sbjct: 1143 RQEEGSFQSIFEMTKRLNLRIVNKKAMESMAYAGCFDSFKGAHRAQYFALDAGGKTFIEN 1202

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              KY   ++ N  +   ++F         + T+      N   +   E+ V+G + SGHP
Sbjct: 1203 ALKYGNSLQDNENSAQVSMFGESADVKMPEPTIPNSEEWNLLYKLNREKEVVGIFISGHP 1262

Query: 968  LDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            LD ++  +        E         G +  + A++   Q   T+ G   G +   + +
Sbjct: 1263 LDDFRVEIEAFCNGNVELLSNVKNHLGRDFTIPAIITDAQHLTTKTGKPFGLILIEDYS 1321


>gi|283458361|ref|YP_003362984.1| DNA polymerase III subunit alpha [Rothia mucilaginosa DY-18]
 gi|283134399|dbj|BAI65164.1| DNA polymerase III, alpha subunit [Rothia mucilaginosa DY-18]
          Length = 1180

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1069 (33%), Positives = 553/1069 (51%), Gaps = 54/1069 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  F HL VH+ YS+L+GA  L ++          ++A +D   LF A +F ++A A
Sbjct: 1    MA-TKEFTHLHVHTEYSMLDGAARLGDLFTYAKELGMKSMATSDHGFLFGAFDFWRQAKA 59

Query: 65   AGIQPIIGCQLDIDMQDNL---------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
              I+PIIG +  +    +            +    +       + +   T EG   L   
Sbjct: 60   HDIKPIIGVEAYLTPGTHRTDRSRVRWGDGSRDDVSGGGAYTHMTMWAETTEGMHNLFRA 119

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S   L  Q     R+    LQ   ++GLI  TG  SG +           A +    F+
Sbjct: 120  SSIASLEGQLY-KPRMDREVLQTY-SKGLIATTGCPSGEVQTRLRLGQFDEAVQAASEFR 177

Query: 176  KLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             +FG D  Y  +  H    +R  +  + +LA    LP VATN+  +  +ED+ AH  L+ 
Sbjct: 178  DIFGKDNFYCEVMDHGLDIERNVQEDLHRLAKKLNLPFVATNDLHYTRQEDHTAHAALLC 237

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            V   + ++   R +    + YL++  EM ++F D+P A ENT+EIA RC+      A  +
Sbjct: 238  VQSGSTLTDPKRFKFDADNFYLRSAEEMYALFGDIPGACENTLEIAERCNVEFNTKANYM 297

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P F   E +     EE+    +   GL  R   G           R++ ++E+ VI  M 
Sbjct: 298  PNFPVPEGE----NEESWFVKEVEKGLHYRFPDGV------PDKVRKQAEYEVGVITSMG 347

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD++PL   L+FERFLNPDR
Sbjct: 348  FPGYFLVVADFINWAKRNGIRVGPGRGSGAGSMVAYAMRITDLNPLDHDLIFERFLNPDR 407

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPDFD+DF   RR EVI YV  KYG E+VAQI+TFG+++AK AL+D  R +  PYS  
Sbjct: 408  VSMPDFDVDFDDRRRGEVIDYVTEKYGEEKVAQIVTFGTIKAKQALKDASRVMDQPYSVG 467

Query: 473  DRLCKLIPND-PAHPVSLQAIADDSRFREA----------RLADPSVDRLLEISQKLEGL 521
            +RL K +P D     ++L  + ++   R A             D    ++ E ++ LEGL
Sbjct: 468  ERLTKAMPPDVMGKNIALANVYNEEDKRYAEAADLRALIDDPVDKIYGQVFETAKGLEGL 527

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R    HAAG+++  + L  ++P+ R       +TQF+    E  GLIK DFLGL+ LT+
Sbjct: 528  KRQWGVHAAGVIMSSKDLVDVIPVMRREADGQVITQFDYPTCEGLGLIKMDFLGLRNLTI 587

Query: 582  LQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +++ +   RG+ +DL  +P DD E+Y LL    TLG+FQL+   MR  L+ M+P+  
Sbjct: 588  ISDAVENIKANRGIDLDLESLPLDDPESYRLLARGDTLGVFQLDGGPMRSLLKLMEPEEF 647

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQ 694
            E I A+++LYRPGP+  ++   Y  RKNGK++I  IHP ++      L  T G+I+YQEQ
Sbjct: 648  EHISAVLALYRPGPMGANSHTNYALRKNGKQEIEPIHPELEEPLKDILDTTYGLIVYQEQ 707

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VM IAQ ++ Y+L EAD+LRRAMGKK K E+DKQ   F  G   NG S+     ++++L 
Sbjct: 708  VMAIAQKVANYTLGEADLLRRAMGKKKKAELDKQYATFHDGMISNGYSEGAIKALWDILL 767

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+DY FNK+H AAY ++SY TA++K HYP E++AA +T   DN +K+  +  + R   I
Sbjct: 768  PFSDYAFNKAHTAAYGLVSYWTAYLKAHYPQEYMAALLTSVGDNKDKLALYLNECRAMGI 827

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVD 873
             ++ P VN   + F    + I + + AI+ VG      ++ A  +   ++S  DF  +V 
Sbjct: 828  TVLAPDVNESTLTFAPVGDDIRFGMGAIRNVGANVVEGMIAAREEKGRYESFNDFLKKVP 887

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----H 929
             +  N+R +ESL+ AGA D  G++R  L    +     A  V++       ++F      
Sbjct: 888  LQVCNKRTIESLIKAGAFDDLGHTRRSLSLIHEAAVDAAVAVKRKEAAGQFDLFGSLGMD 947

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA- 988
            +       +T+      +   +   E+ +LG Y S HPL   +  L         + +  
Sbjct: 948  DALGDELTVTIPDVPEWDRREKLNFERDMLGLYVSDHPLRGLERALSDAASHSVHDIIGE 1007

Query: 989  ---TIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAK-EYEANFF 1032
                  G  + +A M+    ++  +  G++   V   +P+       FF
Sbjct: 1008 DSHVRDGETVTIAGMLTGVSRRIAKSSGNQYASVELEDPSGATITVMFF 1056


>gi|150024446|ref|YP_001295272.1| DNA polymerase III, alpha and epsilon subunits [Flavobacterium
            psychrophilum JIP02/86]
 gi|149770987|emb|CAL42454.1| Probable DNA polymerase III, alpha and epsilon subunits
            [Flavobacterium psychrophilum JIP02/86]
          Length = 1508

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/1100 (31%), Positives = 554/1100 (50%), Gaps = 86/1100 (7%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +TQ L  +  F HL  H+ +S+L+  +S+  ++   A ++  A+A+TD  NL  A  F +
Sbjct: 252  ITQNLANAK-FAHLHNHTQFSVLQSTISVAKLVAAAAKNKMSAVAMTDHANLMGAFHFVR 310

Query: 61   --------KACAA-------------GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
                     A                 ++PI+GC+  +         ++ K+       +
Sbjct: 311  DVLNQNKTAAKKNATAIENGEEATEVEMKPIVGCEFFVCDN------HKDKSKKDNGYQV 364

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            V L    +GY  L ++ S  Y  +      RI  + +++   E +I+L+G   G I    
Sbjct: 365  VFLAKNKKGYHNLAKMSSIAYT-EGFYYVPRIDRNVIEQY-KEDIIVLSGNLYGEIPSKI 422

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSL 218
                   AE+ LL +K  F D  Y+ L RH   D  R    ++  A  HE+ L+ATNN+ 
Sbjct: 423  LNLGENQAEEALLWWKSKFKDDFYLELMRHNQEDENRVNQTLISFANKHEVKLIATNNTF 482

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            ++S++D  AHD+L+ V      +                ++Y K+  EM  +FSDLP+A+
Sbjct: 483  YISKDDANAHDILLCVKEGEKQATPIGRGRGYRFGLPNQEYYFKSGEEMKQLFSDLPDAI 542

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEK--------ECDDIQKEEENELRNKAVAGLEVRL 323
             N  EI  +          +LP+F           + D   + E   L +    G + R 
Sbjct: 543  VNIQEIVDKIEIYSLYRDVLLPKFEIPTEFLVPEDQTDGGVRGENKYLHHLTYQGAKRRY 602

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
            A+          +  +R+DFEL  I    + GYFLIV DFI  A+K ++ VGPGRGS AG
Sbjct: 603  AE-------ITPEIEERIDFELLTIQNSGYPGYFLIVQDFIAEARKMDVSVGPGRGSAAG 655

Query: 384  SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
            SV AY L IT+IDPL ++LLFERFLNPDR+S+PD DIDF  + R +V+ YV  KYG ++V
Sbjct: 656  SVVAYCLGITNIDPLLYNLLFERFLNPDRVSLPDIDIDFDDEGRSKVMDYVIEKYGKKQV 715

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
            AQIIT+G++ AK+A+RD  R L +P  + D++ KL+P       +L    +D+     ++
Sbjct: 716  AQIITYGTMAAKSAIRDTARVLDLPLFEADKIAKLLPGMLPGKWNLARFMNDTEVEIKKV 775

Query: 504  ADPSVDRLL-----------------EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              P     +                 + +Q LEG  R+   HA G++I    ++  VP+ 
Sbjct: 776  LRPEDFDRMKELILLSKEEDLGGETIQQAQILEGNLRNTGIHACGVIITPSDITNFVPVT 835

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDD 605
                SDL VTQF+    E AGL+K DFLGLKTLTL++ ++  +  R     D    P DD
Sbjct: 836  TAKDSDLYVTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRTGIQLDPDTFPIDD 895

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +TY L     T+GIFQ ES+GM++ ++ ++P    D+IA+ +LYRPGPI  I  +  RK
Sbjct: 896  VKTYELFQRGETVGIFQYESAGMQKYMKELKPTVFNDLIAMNALYRPGPIAYIPSFIKRK 955

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+E I       + +LK+T G+ +YQEQVM ++Q L+ +S  +ADVLR+AMGKK ++ +
Sbjct: 956  NGEEPIEYDLEACEELLKDTYGITVYQEQVMLLSQRLADFSKGDADVLRKAMGKKQRDVL 1015

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            DK K +F+S A   G ++     I++    FA+Y FNKSH+  YA I+YQTA++K +YP 
Sbjct: 1016 DKMKPKFVSQAVAKGHAEDKLEKIWKDWEAFAEYAFNKSHSTCYAWIAYQTAYLKANYPA 1075

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKG 844
            E++AA ++  M +++++  F ++ ++  + ++ P VN     F V D+  + + + A+KG
Sbjct: 1076 EYMAAVLSNNMSDIKQVSFFMEECKRMGLAVLGPDVNESFYKFTVNDDYAVRFGIGAVKG 1135

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY-SRMQLLQ 903
            VG      I+E   D  + S+ D   RVD +  N++ +E+L+ AG  DCF    R Q   
Sbjct: 1136 VGMGAVNTIVENRKDGSYKSIFDLAKRVDQRAANKKAIENLILAGGFDCFENTHRAQYFH 1195

Query: 904  S-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +        +   ++    ++N  +   ++F         +  +      N+  +   E+
Sbjct: 1196 TDGDNLTFYEKAIRFGAKFQENENSSQVSLFGDTSDVQISEPLIPPCEEWNTMEKLAKEK 1255

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSR 1014
             V+G Y SGHPLD YK  ++       E      +  G N+    +V + Q +  + G  
Sbjct: 1256 EVVGIYISGHPLDDYKFEMKYFCNNKLESLKNLEQFVGKNLAFGGIVTNVQHRTAKNGKG 1315

Query: 1015 IGWVTFS--EPAKEYEANFF 1032
                     +     E   F
Sbjct: 1316 WATFVLEGYDENN--EFRIF 1333


>gi|28198096|ref|NP_778410.1| DNA polymerase III subunit alpha [Xylella fastidiosa Temecula1]
 gi|182680724|ref|YP_001828884.1| DNA polymerase III subunit alpha [Xylella fastidiosa M23]
 gi|32129492|sp|Q87EY0|DPO3A_XYLFT RecName: Full=DNA polymerase III subunit alpha
 gi|28056156|gb|AAO28059.1| DNA polymerase III alpha chain [Xylella fastidiosa Temecula1]
 gi|182630834|gb|ACB91610.1| DNA polymerase III, alpha subunit [Xylella fastidiosa M23]
 gi|307579189|gb|ADN63158.1| DNA polymerase III subunit alpha [Xylella fastidiosa subsp.
            fastidiosa GB514]
          Length = 1193

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1078 (37%), Positives = 619/1078 (57%), Gaps = 74/1078 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             + SFVHL +H+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  L I   ++                + LL     GY  L
Sbjct: 62   FALIKFYKAAETVGIKPISGADLLIAEPEHPPWG------------MTLLCRDHAGYLNL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
             +L+SR +L     +  V +   W+++   + L  L G       +      + +AE++L
Sbjct: 110  SQLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIG-RHSLAGQLLAKGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++ +FGD L++ L R     +       +Q+A    +P++A+N+  FL + D+ AH+ 
Sbjct: 168  ADWQHVFGDGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVQSDFLAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + +A   ++    RPR  +   YL++  EM ++F+D+P+AL+NT  +A+RC+  +++  
Sbjct: 228  RVCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFADIPDALDNTRTLAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +         +  ++ +R ++  GLE RL +  +A G   +DY  RL+FEL+ I 
Sbjct: 288  YFLPNYPVPN----DETLDSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M FSGYFLIVADFIQW K+  IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC +RRDEVI YV  KYG ERV+QIIT+G++ AKA +RDVGR L  PY
Sbjct: 404  PERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADD------SRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIP+     +       +      +   +   A+  V  LL ++++LE L R
Sbjct: 464  GLVDSVAKLIPSTLGITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTR 523

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PL++  P++ +   +     PVTQF+   +E+ GL+KFDFLGL+TL
Sbjct: 524  NAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTL 583

Query: 580  TLLQKSLDFLAQRGVKVDLSLI-----PFDDHETY-HLLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  + +R  +  +  +     P DD  TY  +  +  T  +FQ ESSGMR+ L+
Sbjct: 584  TIIDWAVKAINKRHARACIDPVDITALPLDDIPTYKDVFASGNTSAVFQFESSGMRRLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +  RK+G ++ +   P    +LK+T G+++YQE
Sbjct: 644  DARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQE 703

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K G+    A  IF+L+
Sbjct: 704  QVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLM 763

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  +AR  N
Sbjct: 764  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNLN 823

Query: 814  IQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
            ++++ P++N     F+    + I Y L AIKGVG +    I++      P+ SL DFC+R
Sbjct: 824  LKVLRPNINHSAYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCTR 883

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-E 930
            V S KLNRR LE+++ AGALD  G +R  ++  L  + K  + + + R +   ++F + +
Sbjct: 884  VTSAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNAD 943

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE----- 985
             GT   ++ L +      +     E+  LG YFSGHP D Y+  ++++            
Sbjct: 944  PGTPVIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALER 1003

Query: 986  -SVATIRGN----------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +  RGN          N  LA +VVS ++    KG    +V   +     E + F
Sbjct: 1004 ILGSQQRGNGEKRTWQPEVNTILAGLVVSVRR----KGDSQVFVQLEDGRGRIECSAF 1057


>gi|262277280|ref|ZP_06055073.1| DNA polymerase III subunit alpha [alpha proteobacterium HIMB114]
 gi|262224383|gb|EEY74842.1| DNA polymerase III subunit alpha [alpha proteobacterium HIMB114]
          Length = 1139

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 436/1032 (42%), Positives = 653/1032 (63%), Gaps = 29/1032 (2%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L++HS +S+ EGA+ ++ +++        A+ + D+ NL  ALEFS +    GIQP+IG 
Sbjct: 8    LKIHSQFSICEGAIKIDKLVNYCKEHSVTAVGLCDSENLSGALEFSSQLKKEGIQPLIGT 67

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-SVRIC 132
            ++ I    + K+T    +         L      GY+ L++L S+ YL  Q       I 
Sbjct: 68   KIYIKENVDGKITYGTAS---------LYAKNQIGYKNLLKLSSKSYLDLQEHDDKPNIN 118

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG- 191
            L+ L++   EG+I+L GGS          N  +     +   K +F D +Y+ +QRH   
Sbjct: 119  LNILKKYH-EGIIILIGGSFSFFSDLLVKNKDEYCFNEVKKLKDIFNDNIYIEIQRHNES 177

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
            +++  E ++++L+    +PL+ATN   +L ++ Y AHD  + V     V++K+R + +  
Sbjct: 178  HEKQLEKKLIKLSSDTSIPLIATNEVFYLEQDSYNAHDAFICVGEKNYVNEKNRLKYSNQ 237

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            HY K  SE  ++F+DLP+ALEN      + ++  +         +     +  K+    L
Sbjct: 238  HYFKKTSEFENLFADLPDALENNKNFKYKFNYFPKK-----SNPLLPSFSENGKDTNQIL 292

Query: 312  RNKAVAGLEVRLAQGAIAK-------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            ++KA  GLE RL +    +           ++Y  RL++E+NVI++MKFSGYFLIV+D+I
Sbjct: 293  KDKAEKGLEERLEKYVYPRLGATTDKDEIKKNYFDRLNYEVNVISKMKFSGYFLIVSDYI 352

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAK NNIPVGPGRGSGAGS+ A+ L+ITD+DP+RF L+FERFLNPDR+SMPDFDIDFCQ
Sbjct: 353  NWAKSNNIPVGPGRGSGAGSLVAWCLSITDLDPIRFGLIFERFLNPDRISMPDFDIDFCQ 412

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + RDEVI YV++KY + +VAQIITFG LQA+ ALRD+GR L +PY +VD+LCK+IP DP+
Sbjct: 413  EGRDEVINYVKDKYPN-KVAQIITFGKLQARMALRDIGRVLGLPYGRVDQLCKMIPFDPS 471

Query: 485  HPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             P+S  ++IA + R +EA   DP + +L+  + KLEGLYR+ +THAAG+VIGDR L ++V
Sbjct: 472  RPLSLAESIAIEPRLQEAEKNDPIIKKLINYALKLEGLYRNVATHAAGVVIGDRNLDEIV 531

Query: 544  PMYRD--VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            P+Y+D      +PVTQF+MK  E+AGL+KFDFLGLKTLT+++K+++F+ +     D+S I
Sbjct: 532  PLYKDLSSTLPIPVTQFDMKSSEEAGLVKFDFLGLKTLTVIKKTIEFIQKDKADFDISKI 591

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
               D +T+ LL++  T+GIFQLESSGMR+ L+ ++P+  EDIIALV+LYRPGP+ NI  Y
Sbjct: 592  NLSDQKTFELLSSGETMGIFQLESSGMREVLKQLKPNKFEDIIALVALYRPGPMQNIPTY 651

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             +RK+ KE++  IHP ++ +LKET GVIIYQEQVMQIAQ LS +S S+AD+LR+AMGKK 
Sbjct: 652  ISRKHEKEEVDYIHPKLENILKETYGVIIYQEQVMQIAQALSSFSASKADILRKAMGKKK 711

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              EM++QK+ FI GA KNGIS+   + IF+L+ KFA YGFNKSHAAAYA+I++QTA++KT
Sbjct: 712  SVEMERQKKDFIDGAVKNGISRDQVIYIFQLVEKFAQYGFNKSHAAAYALIAFQTAYLKT 771

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP+ F  ASM  E+ N +K+  F ++ ++  I I PP++N    +F   D  IYY+L+A
Sbjct: 772  HYPIYFFCASMNTELSNTDKLNLFYEELKRLKIDIRPPNINFSYAEFLPRDKTIYYALSA 831

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +K VG  T   I+ E   +  F+S+ +F SRV+SK LN+  LE L+ +G+LD    +R +
Sbjct: 832  VKAVGYDTISKIVYEREKNGKFNSISEFLSRVESKNLNKLQLEGLIKSGSLDILDNNRKK 891

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L +++    K ++  +K   N+ + +F++E       I        + + + + E   +G
Sbjct: 892  LFENVPEYIKQSKSSDKVNDNEQDQLFSNEMENDQTNIQEFNILDWDKNEKIKKEFESIG 951

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            F+   HPL     +L+K  +  ++E        +  +A  ++S Q+KKT KG+    +  
Sbjct: 952  FFVGEHPLKSNLQVLKKYNVSSHQELKNNNALKDAMIAGTLISIQEKKTAKGNPYAIIKL 1011

Query: 1021 SEPAKEYEANFF 1032
             +    YE   F
Sbjct: 1012 VDLGSMYELFIF 1023


>gi|227833468|ref|YP_002835175.1| DNA polymerase III, alpha subunit [Corynebacterium aurimucosum ATCC
            700975]
 gi|227454484|gb|ACP33237.1| DNA polymerase III, alpha subunit [Corynebacterium aurimucosum ATCC
            700975]
          Length = 1190

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/1074 (27%), Positives = 512/1074 (47%), Gaps = 53/1074 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+ SFVHL  H+ +S+L+G   ++ + D++     PA+ +TD  N++ +  F Q+  +
Sbjct: 1    MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVLRQGMPAVGMTDHGNMYGSNAFYQRMTS 60

Query: 65   AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG++PIIG +  +  +                    +         +L     G + L +
Sbjct: 61   AGVKPIIGIEAYLAPESRFNKKRVLWGTPDQKRDDVSASGAYLHQTMLAENETGLRNLFK 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   EG+I  TG  SG +           A +    +
Sbjct: 121  LSSLASYEGQLGKWPRMDAELIAE-HAEGIIATTGCPSGDVQTRLRLGQFNEALEAAAMW 179

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++G D  ++ L  H    ++     ++++    +LP + TN+  ++ E    +H+ ++
Sbjct: 180  QDIYGKDNFFLELMDHGLDIEKRTRDGLLEIGRKLDLPPLVTNDCHYVLESQAPSHEAML 239

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAP 290
             V         DR +     Y    +  +    D    EA +NT+ IA R      +   
Sbjct: 240  CVQTGKTFMDPDRFKFDGTGYYIKSAAQMRELWDHMVPEACDNTLWIAERVQDYGAIWEE 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +            + L ++ + GL+          G   Q+Y  R ++E++VI  
Sbjct: 300  HTHDRMPIADVPEGYTPTSWLTHEVMEGLK-----DRFNGGDVPQEYIDRAEYEISVIDM 354

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LLFERFLNP
Sbjct: 355  KGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPIEHGLLFERFLNP 414

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R S PD DIDF   RR E+I Y   ++G ++VAQ+ITFG+++ K A++D  +       
Sbjct: 415  ERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKDSAKVHFGQPG 474

Query: 471  QVDR-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                           + K IP         +  ++ +  R+    DP V ++ E ++ LE
Sbjct: 475  FQMADRINGALPPAIMAKDIPLAGIMDPEHERYSEATEVRQMIETDPDVKKIYETARGLE 534

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R A  HA  +++    L   +PM++       +T ++    E  GL+K DFLGL+ L
Sbjct: 535  GVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMDFLGLRNL 594

Query: 580  TLLQKSLDFLAQRG----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            T++   L+ + +         DL     +  + Y LL+   TLG+FQL+S GM++ L+ M
Sbjct: 595  TVIGDCLENIKKNRGEEVHLEDLHADDPNASKVYDLLSRGDTLGVFQLDSGGMQELLKRM 654

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVI 689
            +P   +DI+A ++LYRPGP+  +    Y +RKNG+++I  IHP ++      L ET G+I
Sbjct: 655  KPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLKEILDETYGLI 714

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + +Q ++F  G   NG SK     +
Sbjct: 715  VYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMKDNGYSKEAMDAL 774

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +  +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K   +  D 
Sbjct: 775  WGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKSAIYLADC 834

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDF 868
            R   I+++ P VN     F+     I + + AI+ VG      I++       F S  D+
Sbjct: 835  RHLGIRVLSPDVNESVETFQAVGEDIRFGMGAIRNVGGEVVDSIVKTRREKGAFTSFSDY 894

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              +++    ++RV ESL+ AGA D   + R  L+   ++     Q  +K       ++FA
Sbjct: 895  LDKIELAACSKRVTESLIKAGAFDSLEHPRKGLMLIHEDAVDSVQTTKKAADKGQFDLFA 954

Query: 929  HEKGTFSDK------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
               G           I + +    +       E+ +LG Y SGHPLD ++  L       
Sbjct: 955  GFGGDDQGDSVSAFAIDIPE-ENWDRKHELALEREMLGLYVSGHPLDGFEEALNAQTDTP 1013

Query: 983  YEESVATI--RGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
              + +      G  + +  ++    ++ +++ GS    V+  +    + +   F
Sbjct: 1014 ITKILNGEVGNGQELVIGGIISGVDRRFSKRDGSPWAIVSIEDHNGAQVDILVF 1067


>gi|298207508|ref|YP_003715687.1| putative DNA polymerase III alpha subunit [Croceibacter atlanticus
            HTCC2559]
 gi|83850144|gb|EAP88012.1| putative DNA polymerase III alpha subunit [Croceibacter atlanticus
            HTCC2559]
          Length = 1454

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/1074 (30%), Positives = 539/1074 (50%), Gaps = 70/1074 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-------- 61
            +F HL  HS +S+L+  +S+ +++D   A+  P +A+TD  N+  A  F +         
Sbjct: 261  TFSHLHNHSQFSVLQSTMSIQDLVDNAIANNMPGVALTDHANMMGAFHFVRAVNTYNKSL 320

Query: 62   -----ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
                      ++ I+GC+  +    N       K+       IV+L  T +GY  L ++ 
Sbjct: 321  AGSEDLDKKPLKAIVGCEFQVCEDHN------DKSRQDNGYQIVMLAKTKKGYHNLAKMA 374

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S  Y  +      RI  + +++   E +I+LTG   G +         + AE+ LL +K 
Sbjct: 375  SIAYT-EGFYYVPRIDRAVVEKY-KEDVIVLTGNLYGEVPSKVLNVGEKQAEESLLWWKS 432

Query: 177  LFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             F + LY+ + RH   D  R    +++LA  H++ +VA+NN+ + ++ D  AHD+L+ V 
Sbjct: 433  HFEEDLYMEIMRHDQEDERRANEVLIKLAKAHDIKIVASNNTYYTAKGDANAHDILLCVK 492

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL--- 292
                 S+         + L N+        ++    ++  E       ++          
Sbjct: 493  DGEKQSKPIGRGRGYRYGLPNQEYYFKSNDEMKALFKDLPEAITNTQDVVNKIEGFDLAR 552

Query: 293  ------------PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
                         +  +   D  ++ E   L++    G +          G    + ++R
Sbjct: 553  DVLLPAFEIPEKFKDSKDLDDGGKRGENAFLKHLTYEGAKE-------RYGEITPEIKER 605

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            LDFEL++I +  + GYFLIV DFI+ A+  ++ VGPGRGS AGS  AY L IT+IDP+++
Sbjct: 606  LDFELSIIEKTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSAVAYCLKITNIDPIKY 665

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNPDR+SMPD DIDF  + R  V+ YV  KYG ++VAQIIT+G++ AK+A+RD
Sbjct: 666  DLLFERFLNPDRVSMPDIDIDFDDEGRSRVMDYVIKKYGSDQVAQIITYGTMAAKSAIRD 725

Query: 461  VGRALQMPYSQVDRLCKLIPN-------------DPAHPVSLQAIADDSRFREARLADPS 507
             GR L +P  + D++ KLIP+             + +     +              +  
Sbjct: 726  TGRVLDLPLHETDKIAKLIPDMTKLGKIFGVDEKELSRKFRSEDFEGVKELLSISGGNDL 785

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
              + +  ++ LEG  R+   HA G++I    +S  VP+ R    +L +TQF+   +E AG
Sbjct: 786  QAQTVNQARVLEGSVRNTGVHACGVIITPDDISNFVPIARSKDGELYITQFDNSVVEDAG 845

Query: 568  LIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFLGLKTLTL++ ++  +  + GV++D    P DD +TY L     T+GIFQ ES 
Sbjct: 846  LLKMDFLGLKTLTLIKDTVKIVKAKHGVQLDPDSFPLDDEKTYELFQRGETVGIFQYESP 905

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
            GM++ ++ ++P   +D+IA+ +LYRPGP++ I  +  RK+G E I    P ++  LKET 
Sbjct: 906  GMQKHMQSLKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGDEDIEYDLPAMEEYLKETY 965

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+ +YQEQVM ++Q L+ ++  EAD+LR+AMGKK K  +DK K +FI  AS  G      
Sbjct: 966  GITVYQEQVMLLSQKLADFTKGEADILRKAMGKKQKAVLDKMKPKFIEQASAKGHDAEKL 1025

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA ++  M N++++  F 
Sbjct: 1026 EKVWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNMSNIKQVTFFM 1085

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDS 864
            ++ R+  + ++ P VN     F V  +  I + +AAIKGVG++    I+     +  F S
Sbjct: 1086 EECRRMKLDVLGPDVNESFRKFSVNKEGAIRFGMAAIKGVGSSAVESIVAERKENGHFKS 1145

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQWVE 916
            + D   R+D +  N++  E+L  AG  D F    R Q           L+ + +YA   +
Sbjct: 1146 IFDMAKRIDLRAANKKAFENLALAGGFDSFQDTHRAQYFLDEGDGITFLEKVIRYAAKYQ 1205

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
            +N+ +   ++F         +  +       +  +   E+ V+G Y SGHPLD Y   ++
Sbjct: 1206 ENKNSSQVSLFGEASEVQIPEPVVPPCEEWGTMEKLRKERDVVGMYISGHPLDDYNIEMK 1265

Query: 977  KMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                          +     + LA ++   +   T+        T  +    YE
Sbjct: 1266 SFCNANLNYLEDLQQVLNAELSLACILTDIRHLTTKTNKGWAIFTAEDYHNTYE 1319


>gi|325267457|ref|ZP_08134113.1| DNA-directed DNA polymerase III alpha subunit [Kingella denitrificans
            ATCC 33394]
 gi|324981098|gb|EGC16754.1| DNA-directed DNA polymerase III alpha subunit [Kingella denitrificans
            ATCC 33394]
          Length = 1153

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1040 (37%), Positives = 576/1040 (55%), Gaps = 37/1040 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P ++ L+ HS +S+ +G + +  +    A    PA+A+TD  N F  L+F +    
Sbjct: 10   MNAIP-YIPLRAHSEFSITDGIIRVGELAKTAAEYGYPAVALTDLMNTFGLLKFYKACRK 68

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PI+G ++ I                      +LL+    GY RL EL++  +  + 
Sbjct: 69   AGVKPILGAEVRIANP----------KQPAQPFRALLLIRNHSGYVRLGELLTLAHTDEY 118

Query: 125  GKQ-SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                + ++   WL E    GLI L+G   G I +A      + A +    +   F    Y
Sbjct: 119  RDLIAPQLQEEWLAEGDNSGLICLSGAQWGEIGQALLAGHEEQALQAAQKYAAWFEQAFY 178

Query: 184  VNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + +QR   +       +  V+LA   +LP+VAT+ + FL  ED+ AHD  + +A   V++
Sbjct: 179  LEVQRLPDKPEWETVVAGSVRLAEQLDLPVVATHATQFLQREDFTAHDARVCIAGGWVLA 238

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               RP   +   Y  +  EM   F+DLP AL N++EIA+RC+  L++    LP F   E 
Sbjct: 239  DDKRPHDFSDSQYFAHPEEMAERFADLPAALANSLEIAKRCNVELELGKNFLPDFPTPEG 298

Query: 301  DDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
              +     + L   A  GL  R+         +     +Y+ RLDFEL  I +M F GYF
Sbjct: 299  MPLN----DYLCVLANQGLRERMEVLYPDEAERNAKMPEYQARLDFELQTIIQMGFPGYF 354

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK+N  PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 355  LIVQDFINWAKQNGCPVGPGRGSGAGSLVAYALKITDLDPLKYALLFERFLNPERVSMPD 414

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ  R  VI YV+ KYG E V+QI+TFG+L +KA +RDVGR LQ+P+   DRL K
Sbjct: 415  FDIDFCQANRGRVIEYVREKYGKEAVSQIVTFGTLSSKAVIRDVGRVLQLPFGLCDRLSK 474

Query: 478  LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            L+P +   P+    A+  +   R    A+ + + L     KLE L R+   HA G++I  
Sbjct: 475  LVPVEANKPLGLQAALEAEPEIRTLIEAEEAEELLTLA-LKLEDLTRNLGMHAGGVLIAP 533

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595
              ++    +Y+      PV+ ++   +E+ GL+KFDFLGL+ LT+++ +  F+ Q RG  
Sbjct: 534  GRIADFCGVYQADEHSSPVSMYDKGDVEEIGLVKFDFLGLRNLTIIEMAQQFIRQTRGED 593

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D++ I  DD   Y +     T  +FQ ESSGM+Q L+       E++IA VSLYRPGP+
Sbjct: 594  IDVNRIALDDQAAYQIFRDANTTAVFQFESSGMKQMLKTAHTTKFEELIAFVSLYRPGPM 653

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            +NI  +   +    K   +HPL++P+L+ T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 654  ENIPDFVA-RMKGAKFEYMHPLLEPVLEPTYGIMVYQEQVMQAAQVIGGYSLGGADLLRR 712

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K  I +  A  IF+ + KFA YGFNKSHAAAYA +SYQ
Sbjct: 713  AMGKKKPEEMVKHREIFAEGAAKQNIDRAKADEIFDYMEKFAGYGFNKSHAAAYAYVSYQ 772

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ--FNIQIMPPSVNTPCVDFKVG-D 832
            TAW+K HYP EF+AA+M+ E+DN +++K F  DA++    I+ +PP +N     F    +
Sbjct: 773  TAWLKAHYPAEFMAATMSSELDNTDQLKVFFDDAQRPVNGIRFLPPDINQSFYRFIPNAN 832

Query: 833  NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            N I Y+L AIKG G      I+    A+  F  L DFC R+  K +NRR +E+L+  GA 
Sbjct: 833  NEIRYALGAIKGTGEAVVNQIVAEREANGAFTGLLDFCERMG-KHINRRSVEALIRGGAF 891

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R  LL ++D   + A+  +K+++     +F        D I ++     + +V+
Sbjct: 892  DALEPNRAMLLANVDLALQNAE--QKHQSANQGGLFDMFDDV-IDDIQMQPAPAWSEAVQ 948

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               E+  +GFY SGHP   Y+  +R++      +      G   R+A    S +   T++
Sbjct: 949  LAEEKTAIGFYLSGHPFSPYREEVRRVAPVSLAKLSEQ-DGTQ-RVAGFATSIRSIMTKR 1006

Query: 1012 GSRIGWVTFSEPAKEYEANF 1031
            G  +  +   +   + E   
Sbjct: 1007 GKMLAIM-LEDDEAKQEVLV 1025


>gi|262184456|ref|ZP_06043877.1| DNA polymerase III subunit alpha [Corynebacterium aurimucosum ATCC
            700975]
          Length = 1193

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/1077 (27%), Positives = 512/1077 (47%), Gaps = 53/1077 (4%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
               + K+ SFVHL  H+ +S+L+G   ++ + D++     PA+ +TD  N++ +  F Q+
Sbjct: 1    MSRMAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVLRQGMPAVGMTDHGNMYGSNAFYQR 60

Query: 62   ACAAGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
              +AG++PIIG +  +  +                    +         +L     G + 
Sbjct: 61   MTSAGVKPIIGIEAYLAPESRFNKKRVLWGTPDQKRDDVSASGAYLHQTMLAENETGLRN 120

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L +L S      Q  +  R+    + E   EG+I  TG  SG +           A +  
Sbjct: 121  LFKLSSLASYEGQLGKWPRMDAELIAE-HAEGIIATTGCPSGDVQTRLRLGQFNEALEAA 179

Query: 172  LTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
              ++ ++G D  ++ L  H    ++     ++++    +LP + TN+  ++ E    +H+
Sbjct: 180  AMWQDIYGKDNFFLELMDHGLDIEKRTRDGLLEIGRKLDLPPLVTNDCHYVLESQAPSHE 239

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQV 287
             ++ V         DR +     Y    +  +    D    EA +NT+ IA R      +
Sbjct: 240  AMLCVQTGKTFMDPDRFKFDGTGYYIKSAAQMRELWDHMVPEACDNTLWIAERVQDYGAI 299

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                    +            + L ++ + GL+          G   Q+Y  R ++E++V
Sbjct: 300  WEEHTHDRMPIADVPEGYTPTSWLTHEVMEGLK-----DRFNGGDVPQEYIDRAEYEISV 354

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I    +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LLFERF
Sbjct: 355  IDMKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPIEHGLLFERF 414

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R S PD DIDF   RR E+I Y   ++G ++VAQ+ITFG+++ K A++D  +    
Sbjct: 415  LNPERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKDSAKVHFG 474

Query: 468  PYSQVDR-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
                              + K IP         +  ++ +  R+    DP V ++ E ++
Sbjct: 475  QPGFQMADRINGALPPAIMAKDIPLAGIMDPEHERYSEATEVRQMIETDPDVKKIYETAR 534

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             LEG+ R A  HA  +++    L   +PM++       +T ++    E  GL+K DFLGL
Sbjct: 535  GLEGVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMDFLGL 594

Query: 577  KTLTLLQKSLDFLAQRG----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            + LT++   L+ + +         DL     +  + Y LL+   TLG+FQL+S GM++ L
Sbjct: 595  RNLTVIGDCLENIKKNRGEEVHLEDLHADDPNASKVYDLLSRGDTLGVFQLDSGGMQELL 654

Query: 633  EGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQ 686
            + M+P   +DI+A ++LYRPGP+  +    Y +RKNG+++I  IHP ++      L ET 
Sbjct: 655  KRMKPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLKEILDETY 714

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+I+YQEQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + +Q ++F  G   NG SK   
Sbjct: 715  GLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMKDNGYSKEAM 774

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              ++  +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K   + 
Sbjct: 775  DALWGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKSAIYL 834

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME-ASADKPFDSL 865
             D R   I+++ P VN     F+     I + + AI+ VG      I++       F S 
Sbjct: 835  ADCRHLGIRVLSPDVNESVETFQAVGEDIRFGMGAIRNVGGEVVDSIVKTRREKGAFTSF 894

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             D+  +++    ++RV ESL+ AGA D   + R  L+   ++     Q  +K       +
Sbjct: 895  SDYLDKIELAACSKRVTESLIKAGAFDSLEHPRKGLMLIHEDAVDSVQTTKKAADKGQFD 954

Query: 926  IFAHEKGTFSDK------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
            +FA   G           I + +    +       E+ +LG Y SGHPLD ++  L    
Sbjct: 955  LFAGFGGDDQGDSVSAFAIDIPE-ENWDRKHELALEREMLGLYVSGHPLDGFEEALNAQT 1013

Query: 980  IKGYEESVATI--RGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
                 + +      G  + +  ++    ++ +++ GS    V+  +    + +   F
Sbjct: 1014 DTPITKILNGEVGNGQELVIGGIISGVDRRFSKRDGSPWAIVSIEDHNGAQVDILVF 1070


>gi|295706863|ref|YP_003599938.1| DNA polymerase III subunit alpha [Bacillus megaterium DSM 319]
 gi|294804522|gb|ADF41588.1| DNA polymerase III, alpha subunit [Bacillus megaterium DSM 319]
          Length = 1116

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1009 (36%), Positives = 583/1009 (57%), Gaps = 37/1009 (3%)

Query: 27   LSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMT 86
            + ++ +++        AIA+TD N ++  + F +    AGI+PIIG  L I   +  +  
Sbjct: 19   VRIHELVETAKKMNYEAIALTDENVMYGVIPFYKACVKAGIKPIIGLTLSILEHEESER- 77

Query: 87   NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM 146
                        +VLL    +GY+ L++L S +   ++      +   WL    + GLI 
Sbjct: 78   ---------AYPLVLLAENDKGYENLLKLSSLVQTKEKHG----VNKKWLHHY-SGGLIA 123

Query: 147  LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYT 206
            +T G +G ++     N  Q A++ L  FKK++   LY+++QRH   + +   Q+ +LA  
Sbjct: 124  ITPGVTGEVETLLAENKFQDAKRVLQFFKKVYSQSLYISIQRHGQDETFINQQLTELAAE 183

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
              +PLVATN   +L +ED +A++ L+A+     + S ++    + ++Y K+  EM  +F 
Sbjct: 184  ENIPLVATNQVKYLKKEDRDAYECLVAIRDGEKLHSDEEVKSKSSEYYFKSPDEMEDLFH 243

Query: 266  DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
            D    +E +++IARRC   + +    +P++               LR     GL+ R+  
Sbjct: 244  DQHFLIEESIKIARRCELEISLGVMSIPKYPVP----PSVTSSTYLRTLCEKGLQERVQ- 298

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                     + Y +RLD+ELN+I  M+FS YFLIV DF+ +A ++ I  GPGRGS AGS+
Sbjct: 299  ------VITEQYEERLDYELNIIENMRFSDYFLIVWDFMNYAHEHGILTGPGRGSAAGSL 352

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             +YAL IT++DP++  LLFERFLNP+R+SMPD DIDF  ++RD+VI+YV  KYG   VAQ
Sbjct: 353  VSYALRITNVDPIQHQLLFERFLNPERISMPDIDIDFPDNKRDQVIQYVAQKYGGLHVAQ 412

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
            IITFG+L AKAA+RDVGR +      ++++ K IP  P   +    + D    ++    +
Sbjct: 413  IITFGTLAAKAAVRDVGRVMGFDQEALNKMSKAIPTKPGTTLKSA-LRDSRVLQDYLSEN 471

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
             +  +   I+ K+EGL RH STHAAG+VI ++PL+Q V +  +   D+ +TQ+ M+ ++ 
Sbjct: 472  EARKQWYNIAMKIEGLPRHTSTHAAGVVISEKPLTQSVAVQ-EGHDDVYLTQYPMEALQD 530

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             GL+K DFLGL+ LT+L   L  + +   +   LS IPF+D +T+ LL+   T GIFQLE
Sbjct: 531  VGLLKMDFLGLRNLTILDHILKKIERDMNRKLSLSHIPFNDQKTFELLSKGDTTGIFQLE 590

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            S GMR+ L+ ++P  +EDI+A+ +LYRPGP++NI  Y  RK+G EK++  HP +  +L+ 
Sbjct: 591  SDGMRRVLQQLKPTELEDIVAVNALYRPGPMENIPTYIKRKHGVEKVIYDHPTLKDILQS 650

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T GVI+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +  +D+++  FI G+ K G   +
Sbjct: 651  THGVIVYQEQIMQIASKMAGFSLGEADLLRRAVSKKERAVLDRERAHFIQGSKKKGYDLS 710

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +A  +++L+ +FADYGFN+SHA AY++++YQ A++K HYP++F +A +T  + N  KI +
Sbjct: 711  VANRVYDLIVRFADYGFNRSHAVAYSMVAYQLAYLKAHYPLQFFSALLTSVIGNEGKIAQ 770

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
            +  + ++  IQ++PPS+N     F V    I YSLAAIK +G    + I E    K F+ 
Sbjct: 771  YINELKRNKIQVLPPSINKSMYSFNVEGESIRYSLAAIKHIGAAAMQEITEERKKKRFED 830

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            L DFC+RV  K +N++ LE+L+ +G  D FG +R  LL ++D   ++A  V  +      
Sbjct: 831  LFDFCARVSQKAVNKKGLEALILSGGFDEFGENRATLLATIDVAFEHASLVLPDDDFG-- 888

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
              F  E   FS K    +        R + E+ +LGFY S HP   Y+ +     +    
Sbjct: 889  --FGDE---FSLKPKYMEKEELKIEDRLQYEKDMLGFYLSSHPASQYEALNSFYSVVSLH 943

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +      G  + L   V+  +  +T+KG ++ ++  ++ + E E   FP
Sbjct: 944  DMKEYASGKAVSLLVFVLEIRVIRTKKGEQMAFLRITDESGEGEVVAFP 992


>gi|305681335|ref|ZP_07404142.1| DNA polymerase III subunit alpha [Corynebacterium matruchotii ATCC
            14266]
 gi|305659540|gb|EFM49040.1| DNA polymerase III subunit alpha [Corynebacterium matruchotii ATCC
            14266]
          Length = 1203

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/1073 (30%), Positives = 517/1073 (48%), Gaps = 47/1073 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +   + K  SFVHL  H+ YS+L+G   ++ + ++       A+ +TD  N+F +  F +
Sbjct: 14   MMASMAKKSSFVHLHNHTEYSMLDGMAKIDMLAEEATRLGMSAVGMTDHGNMFGSDSFYR 73

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQ----------GKTPFPTVPSIVLLVSTAEGYQ 110
                AGI+PIIG +  +       M  Q            +         ++  TAEG  
Sbjct: 74   AMTKAGIKPIIGIEAYLAPGSRFDMKRQRWGDESQKSDDVSASGAYLHQTMIAETAEGLH 133

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L  L S      Q  +  R+    + E    G+I  TG  SG I           A + 
Sbjct: 134  NLFYLSSMASYEGQLGKWPRMDAELIAE-HATGIIGTTGCPSGDIQTRLRLGQFDKALET 192

Query: 171  LLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
               ++ ++G D  ++ L  H    +    S+++++    +LP + TN+  ++ E    AH
Sbjct: 193  AAMWQDIYGRDNFFLELMDHGLNIENRVRSELLEIGRKLDLPPLVTNDCHYVLESQAHAH 252

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQ 286
            +V++ V     +S  DR +     Y    +E +    D   P+A +NT+ IA R      
Sbjct: 253  EVMLCVQTGKTMSDPDRFKFDGTGYFVKSAEQMRELWDDLVPDACDNTLWIAERVQDYSS 312

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
            +        +              LR++ + GL                +Y +R ++E+ 
Sbjct: 313  IWEAHPYDRMPIADVPEGHTPTTWLRHQVLDGLR-----DRFDGAEVPANYIERAEYEIG 367

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI    +  YFLIVA+ I+ A+   I VGPGRGS AGS+ AYALTIT+IDP+   LLFER
Sbjct: 368  VIDMKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGSLVAYALTITNIDPIHHGLLFER 427

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR--A 464
            FLNP+R S PD DIDF   RR E+IRY   ++G +++AQ+ITFG+++ K A++D  R   
Sbjct: 428  FLNPERPSAPDIDIDFDDRRRGEMIRYASERWGEDKIAQVITFGTVKTKQAIKDSARALY 487

Query: 465  LQMPYSQVDRLCK-LIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEIS 515
             Q  Y   DR+ K L P   A  +S             +    R+    DP V ++ + +
Sbjct: 488  GQPGYQIADRITKVLPPPIMAKDISLAGIMDPEHDRYTEAGEVRQLIETDPDVRQIYDTA 547

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + LEG+ R A  HA  +++   PL   +PM++       +T +     E  GL+K DFLG
Sbjct: 548  RGLEGVVRQAGVHACAVIMASVPLLDCIPMWKRAADGALITGWPYPACEAIGLLKMDFLG 607

Query: 576  LKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L+ LT++  +L+ +   R   +DL  +   D   Y LL    TLG+FQL+S GM++ L+ 
Sbjct: 608  LRNLTVIGDALENIKINRDETIDLENLAITDPNVYKLLARGDTLGVFQLDSGGMQELLKR 667

Query: 635  MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGV 688
            MQP    DI+A ++LYRPGP+  +  + Y +RKNG++ I  IHP ++     +L ET G+
Sbjct: 668  MQPTEFNDIVAALALYRPGPMGVNAHLDYADRKNGRKPITPIHPELEEALKDILDETYGL 727

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQ+M+I++ ++ Y+  EAD  R+AMGKK  E +  + E+F +G   NG SK     
Sbjct: 728  IVYQEQIMEISRRVANYTAGEADGFRKAMGKKKPEVLAAEYEKFSAGMFSNGYSKDAVDA 787

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++  +  FA Y FNKSHAA Y ++SY TA++K +Y  E++AA +T   D  +K   +  +
Sbjct: 788  LWGTIEPFASYAFNKSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVSDKKDKSAIYLAN 847

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLED 867
             R   I ++ P VN    +F      I + L A++ VG      I+        +    D
Sbjct: 848  CRHLGIAVLSPDVNESAYNFLPVGQDIRFGLGAVRNVGEDVVASIVRERKAKGLYKDFTD 907

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            +  ++D    N+RV ESL+ AGA D  GYSR  L+   ++    A   +K       ++F
Sbjct: 908  YLEKIDLTACNKRVTESLIKAGAFDSMGYSRKGLMMVFEDAVDAAIGPKKAMDKGQFDLF 967

Query: 928  AHEKGTFSDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            +   G       +          +   +   E+ +LG Y SGHPLD ++  L        
Sbjct: 968  SALGGESEVTENVFSISVPDDTWDRKHQLALERDMLGLYVSGHPLDGFEEALDAQVDTSL 1027

Query: 984  E--ESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
                S     G  +++  ++ +  ++ ++K GS    VT  +    + E   F
Sbjct: 1028 SVVASEELKNGAEVQIGGIISAVDRRVSKKDGSPWAIVTIEDQHGVQVEMLVF 1080


>gi|15835446|ref|NP_297205.1| DNA polymerase III subunit alpha [Chlamydia muridarum Nigg]
 gi|270285627|ref|ZP_06195021.1| DNA polymerase III subunit alpha [Chlamydia muridarum Nigg]
 gi|301337023|ref|ZP_07225225.1| DNA polymerase III subunit alpha [Chlamydia muridarum MopnTet14]
 gi|14194688|sp|Q9PJJ7|DPO3A_CHLMU RecName: Full=DNA polymerase III subunit alpha
 gi|7190859|gb|AAF39632.1| DNA polymerase III, alpha subunit [Chlamydia muridarum Nigg]
          Length = 1237

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1077 (35%), Positives = 579/1077 (53%), Gaps = 66/1077 (6%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L  HS YS+L+   S+   + K      PA+A+TD  NLF A++F +      I+PII
Sbjct: 4    IPLHCHSQYSILDATCSIKKFVAKAVEYHIPALALTDHGNLFGAVDFYKTCKQNAIKPII 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+L +          + K+       ++LL    EGY+ L  L S  Y  +      RI
Sbjct: 64   GCELYVAPSSRFDKKKERKSQVAN--HLILLCKDEEGYRNLCLLSSLAYT-EGFYYFPRI 120

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L++  ++GLI L+   SG I +A    S +  EK LL ++ LF +  +  +Q H+ 
Sbjct: 121  DRELLKQ-HSKGLICLSACLSGSIAQAALE-SEEALEKDLLWYQDLFQEDFFSEVQLHKS 178

Query: 192  YDRYRE----------------------SQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             +                            V+ ++    +  VATN+  +L  +D+ AH+
Sbjct: 179  SEEKIALFEEEWLRQNYYQFIEKQLKVKDAVLTVSKRLGISSVATNDIHYLDPDDWLAHE 238

Query: 230  VLMAVA---------HSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            +L+ V           +T V    R    + + Y K+  EM  +F+D PE + NT+ +A 
Sbjct: 239  ILLNVQSREPIRTAKQNTYVPNPKRKTYPSREFYFKSPQEMAELFADHPETISNTLIVAD 298

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQ---GAI 328
            RC+  L       P ++ ++        E E        L      GL+ +      G I
Sbjct: 299  RCNLELDFVTKHYPIYVPEDLQKKGSYSEEERYNASSAFLEQLCEQGLKTKYTPELLGHI 358

Query: 329  AKGYHAQD----YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            A+ +  +D     ++RL  E  +I       Y LIV D I WAK + IPVGPGRGSGAGS
Sbjct: 359  AQKFPEKDPLTVVKERLSLESTIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGAGS 418

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            V  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R++VI Y   ++G E VA
Sbjct: 419  VMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMIGREKVINYAIERHGKENVA 478

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            QIITFG+++AK A++DVGR L  P S+V+ + K IP+  A   S   +  D   R+  + 
Sbjct: 479  QIITFGTMKAKMAIKDVGRTLDTPLSKVNLIAKKIPDLNATIASA--LESDPDLRQLYID 536

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            D     ++++++KLEG  R+   HAAG++I   PL+  +P+     S +  TQ++MK +E
Sbjct: 537  DAEAAEIIDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKPVE 596

Query: 565  KAGLIKFDFLGLKTLTLLQ-KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              G++K DFLGLKTLT +   +     + G+ +  + +P +D  T+ LL    T+GIFQ+
Sbjct: 597  SVGMLKVDFLGLKTLTSIHVATKAIYKKTGILLQAATLPLNDRNTFSLLHQGKTMGIFQM 656

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES GM++  + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++P+LK
Sbjct: 657  ESRGMQELAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPILK 716

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  E+M K++E+F S AS NGI  
Sbjct: 717  ETFGIMVYQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRASANGIDP 776

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
            +IA  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ 
Sbjct: 777  SIATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEKVG 836

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862
            K  Q+A   NI ++PP +N    DF+     I +SL A+KGVG +    I+E    + P+
Sbjct: 837  KLIQEAHSMNIPVLPPDINESGQDFEATQEGIRFSLGAVKGVGVSIVDSIVEEREKNGPY 896

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             SL+DF  R D KK+ ++ LESLV AG+ +CF  ++   +  L+++       +K     
Sbjct: 897  RSLQDFVQRSDFKKVTKKQLESLVDAGSFNCFEPNKDLAIAILNDLYDTFSREKKEAATG 956

Query: 923  HENIFAHEKGTFSD---KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                F+    T       I+ E     +     + E+ +LG Y + HP+D  K +L  + 
Sbjct: 957  VLTFFSLNSMTKDPVKVTISPENIVRRSDKELLKREKELLGVYLTAHPMDAVKHLLPFLS 1016

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKT----RKGSRIGWVTFSEPAKEYEANFF 1032
            +   ++      G+ +R   ++     K +    +K      +  S+    YE   +
Sbjct: 1017 VVQSKDFEGLPHGSVVRTVFLIDKVTTKISSVEHKK---FALLQVSDEEDSYELPIW 1070


>gi|262372309|ref|ZP_06065588.1| DNA polymerase subunit III [Acinetobacter junii SH205]
 gi|262312334|gb|EEY93419.1| DNA polymerase subunit III [Acinetobacter junii SH205]
          Length = 1187

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1035 (36%), Positives = 578/1035 (55%), Gaps = 39/1035 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ +S+ E  + + +++    A++ PA+AITD +NL +A++F       GI+PI
Sbjct: 3    FVHLGIHTEFSITESIVRIPDLVKAAVAEEMPALAITDLSNLHAAVKFYGACLGKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + ++  ++                  LL  +  G++ L E+VSR ++  Q      
Sbjct: 63   MGSVIRLNDAEH---------------RATLLAMSNTGWRNLTEIVSRGFIEGQQLSVPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E   E LI+L G     + +    ++ Q AE  L  +   FG+R+Y++L R  
Sbjct: 108  VQKEWVLE-QAEDLIILLG-QHSDVGKMLCSSNPQKAEPLLEDWISKFGNRVYLSLTRTD 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     + V+LA  +++ +VA N+  F+ ++D+ AH+  + +A   V+    RP+  
Sbjct: 166  RVGEEDFIVEAVKLAAKYQIGVVAHNDIHFIEQDDFYAHEARVCIADGYVLGDDKRPKPY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ Y K   +M  +FSD+P A+ENT +IA+RC+  LQ+    LP F   +   I    E
Sbjct: 226  SPEQYFKTAEQMSELFSDIPSAIENTYQIAKRCNVALQLGTYFLPDFPIPDGYTIDTYFE 285

Query: 309  NELRNKAVAGLEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +  R      L       +         + Y +R+ +E+++I +M F GYFLIV DFIQW
Sbjct: 286  HLSREGLEERLNHLYPIDERDEDWPDIRKPYDERIKYEVDIILKMGFPGYFLIVMDFIQW 345

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DFC   
Sbjct: 346  AKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAG 405

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ K++P  P   
Sbjct: 406  RDRVIEYVAQNYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLGV 465

Query: 487  VSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
               QAI  + + ++      + D      + E++ KLEG+ R+   HA G+VI    ++ 
Sbjct: 466  DLKQAIELEPQLKDIVTNPANPDHDDAAEIWEMALKLEGITRNTGKHAGGVVIAPGKITD 525

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV---DL 598
               +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +R       ++
Sbjct: 526  YSAVICDPDGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIQSDVPLNI 585

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP+D I
Sbjct: 586  ANVPLDDKDAYLVFAEANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMDLI 645

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   +    +   +HPL++ +L+ T G+++YQEQVMQ AQ  +GY+L  AD+LRRAMG
Sbjct: 646  PDFI-HRMHGGEFEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMG 704

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM KQ++ FI GA++  I +  A +IF+ + KFA YGFNKSHAAAYA+++Y TAW
Sbjct: 705  KKKPEEMVKQRQIFIKGAAEKDIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAW 764

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYY 837
            +K HYP EF+AA M+ EM N + +     D R   ++++PPSVN     F  + +  I Y
Sbjct: 765  LKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNKLEVLPPSVNMSLYHFHAIDERTIVY 824

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L AIKGVG    + ++++   D P+  L DFC R+D KK+N+R LE+L+ AGALDC G 
Sbjct: 825  GLGAIKGVGEQAMQSVIDSRIKDGPYKDLFDFCHRIDLKKINKRTLEALIRAGALDCLGI 884

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R  L+  L    + A+    NR     ++F   +     +   +     +  VR + E+
Sbjct: 885  ERSSLMAQLPEAVQAAEQARSNRETGIMDLFGEVEEV--QRKPAKPVKPWSDEVRLKGEK 942

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              LG Y +GHP+DVY+  L+        E   T RG     A +V+       R      
Sbjct: 943  DTLGLYLTGHPIDVYRSELKAFIPAKLNEVTPTRRGVTTVFAGLVLDVANFPNR-----I 997

Query: 1017 WVTFSEPAKEYEANF 1031
             +T  +     E + 
Sbjct: 998  MITLDDGTARIEVSC 1012


>gi|304383785|ref|ZP_07366243.1| DNA-directed DNA polymerase III alpha subunit [Prevotella marshii DSM
            16973]
 gi|304335041|gb|EFM01313.1| DNA-directed DNA polymerase III alpha subunit [Prevotella marshii DSM
            16973]
          Length = 1238

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1113 (31%), Positives = 557/1113 (50%), Gaps = 94/1113 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66
             FVHL VH+ YS+L+G  S+ N+++K  A+    +AITD  N+F   EF           
Sbjct: 3    DFVHLHVHTYYSILDGQSSIENLVEKAVANGMKGMAITDHGNMFGTKEFYNYCKGVNARL 62

Query: 67   -------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                    +PIIGC++ +      K     +    +   +++L     GY+ LI+LVSR 
Sbjct: 63   KAEGKPAFKPIIGCEMYVA--HRKKTDKVFEKGDRSGYHLIVLAKNYTGYKNLIKLVSRS 120

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            + +D      R     L+    EGLI+ +   +G + R       + A + +  + ++FG
Sbjct: 121  W-VDGFYMRPRTDREDLERFH-EGLIVCSACIAGEVPRKILSGDMEGAREAVEWYHRVFG 178

Query: 180  DRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            +  Y+ +QRH   D             +     ++ L   + + ++ TN++ F+ +E+ E
Sbjct: 179  EDYYLEMQRHEVKDPHVKANRETFPQQQRANKVLLTLGKEYGIKVICTNDAHFVDQENAE 238

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            AHD L+ ++    +   +R   T   + K R EM  +F+D PEAL NT+EI  +      
Sbjct: 239  AHDHLLCLSTGKDLDDPNRLIYTKQEWFKTREEMNEVFADQPEALTNTLEILDKVEVYSI 298

Query: 287  VHAPILPRFIEKECDDIQKE--------------------------EENELRNKAVAGLE 320
               PI+P F   E    +++                          EE E + + + G +
Sbjct: 299  DSLPIMPFFPIPESFGTEEDIRRRYTKEQLFEEFTRDENGNEILSREEAEQKIEKLGGYD 358

Query: 321  VRLAQGAIAK---------------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                    A                    ++  +R+ FEL+++  M F GYFLIV DFI 
Sbjct: 359  KLYRIKFEADYLAKLAYDGAKPLYGDPLPEEVAERIKFELHIMKTMGFPGYFLIVQDFIN 418

Query: 366  WAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             A+ N  + VGPGRGS AGSV AY L IT IDP+++ LLFERFLNPDR+S+PD D DF  
Sbjct: 419  SARNNLGVLVGPGRGSAAGSVVAYCLGITKIDPIKYDLLFERFLNPDRISLPDIDTDFDD 478

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D R +V+ +V++KYGH++VA IIT+G++  K +++DV R  ++P  Q + LCK+IP+   
Sbjct: 479  DGRGKVLEWVEDKYGHDKVAHIITYGTMATKNSIKDVARVERLPLEQANYLCKVIPDRLP 538

Query: 485  HPVSLQ---AIADDSRFREARL-ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              + +    AI      REA    D  +   ++ ++ LEG  R    HA G +I    +S
Sbjct: 539  DGMKMNLTNAIKAVPELREAEASPDERLSNTMKYAKMLEGTVRGTGIHACGTIICRDAIS 598

Query: 541  QLVPMY-----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV 594
              VP+       D    L  TQ++   IE+ GLIK DFLGLKTL++L+++++ +    G 
Sbjct: 599  DWVPVSVAEDKADPGHKLLCTQYDGHVIEETGLIKMDFLGLKTLSILKEAVENIRISTGD 658

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +DL  IP DD  TY L     T+G FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP
Sbjct: 659  VIDLDHIPIDDKLTYQLYCEGRTIGTFQFESAGMQKYLRELQPSVFEDLIAMNALYRPGP 718

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +  RK    KI    P ++  LK+T G+ +YQEQVM +++ L+ ++  ++D LR
Sbjct: 719  MDYIPDFIARKRDNSKIKYDLPCMEKYLKDTYGITVYQEQVMLLSRQLANFTRGQSDTLR 778

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +AMGKK  ++M+  +  F  G +KNG  K +   I+E   KFA Y FNKSHA  Y+ +++
Sbjct: 779  KAMGKKQIDKMNHLEGLFYEGGAKNGYPKEVLSKIWEDWKKFASYAFNKSHATCYSWVAF 838

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DN 833
            QTA++K HYP E++AA M+  ++N+ +I KF  + +   I  + P VN     F V    
Sbjct: 839  QTAYLKAHYPAEYMAAVMSRNLNNIAEITKFMDECKAMGISTLGPDVNESRQKFSVNKKG 898

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I + LAAIKG+G   A  I+     + PF  + D   R++   +NR+ LESLV +G LD
Sbjct: 899  EIRFGLAAIKGMGDAAADAIIAERDKNGPFKDVFDVVQRINLNAVNRKALESLVLSGGLD 958

Query: 893  CFGYSRMQLLQ-------SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
             F  +R             LD + +Y Q  +  +     ++F   +       ++     
Sbjct: 959  SFRIARESFFAPDNRGNQFLDTLIRYGQLYQMEQNEAQNSLFGGTEAVEIATPSVPSAEP 1018

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES------VATIRGNNIRLAA 999
             +   R   E+ ++G Y S HPLD +  I   +      E           + + +    
Sbjct: 1019 WSPPERLNRERDLVGIYLSAHPLDDFGMIFHNLCNTACTEVGQDGRREELSKRDELIFGG 1078

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V S + K T+ G   G+VT  +     E  FF
Sbjct: 1079 IVTSNKSKFTKTGKPCGFVTLEDFEGSGELAFF 1111


>gi|62184719|ref|YP_219504.1| DNA polymerase III subunit alpha [Chlamydophila abortus S26/3]
 gi|62147786|emb|CAH63532.1| putative DNA polymerase III alpha subunit [Chlamydophila abortus
            S26/3]
          Length = 1248

 Score =  690 bits (1780), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1075 (33%), Positives = 563/1075 (52%), Gaps = 60/1075 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L  HS YS+L+   S+ + + K    Q P++A+TD  NL+ A+EF ++     I+PII
Sbjct: 10   IPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEFYKECQQNDIKPII 69

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC++ +          + K+       ++LL     GY+ L  L S  +  +      RI
Sbjct: 70   GCEVYVAPSSRFDKKKEKKSRV--AHHLILLCKNELGYRNLCLLSSLAFT-EGFYYFPRI 126

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L +   EGLI L+   S  + +A    S +  EK L  ++ LFG+  Y  +Q H+ 
Sbjct: 127  DRELLSQ-HAEGLICLSACLSSSVAQAALE-SEEALEKDLRWYQNLFGEDFYSEIQLHKM 184

Query: 192  YDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             +                            V+  +    +  VATN+  ++  +D+ AH+
Sbjct: 185  SEEKIASLGEEWLKHEYYQFIDSQTKVNQAVLDASKRLGIRSVATNDIHYIHADDWLAHE 244

Query: 230  VLMAVAHSTVVSQKDRPRV----------TPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            +L+ V     +    +             + ++Y K+  EM  +F+D PE + NT+E+A 
Sbjct: 245  ILLNVQLGETIRIAKQNTYIPNPKRKTFRSREYYFKSPEEMARLFADHPETITNTLEVAD 304

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQGAIAK- 330
            +C+  L + +   P ++ +     Q   E E        LR     GL  +     +A  
Sbjct: 305  KCNLHLNLSSKHYPIYVPEFLKSKQNYTEEERYAASAAFLRELCEKGLSTKYTPEKLAHI 364

Query: 331  ------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                      +  ++RL+ E+++I       Y LIV D I WAK N IPVGPGRGSGAGS
Sbjct: 365  SKKFPDRDPLELVKERLEMEMSIIIPKGMCDYLLIVWDIIYWAKDNGIPVGPGRGSGAGS 424

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            V  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + VA
Sbjct: 425  VMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDNVA 484

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            QIITFG+++AK A++DVGR L +P S+V+ + K IP    +    +A+  D    E    
Sbjct: 485  QIITFGTMKAKMAVKDVGRTLDVPLSKVNHIAKHIPE--LNTTLAKALETDPHLNELYTN 542

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            D    ++++++ +LEG  R+   HAAG++I    L+  +P+     S +  TQF+MK +E
Sbjct: 543  DAEAAQVIDMAMRLEGSIRNTGVHAAGVIICGDRLTNHIPICISKDSTMITTQFSMKPVE 602

Query: 565  KAGLIKFDFLGLKTLTLLQ-KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              G++K DFLGLKTLT +         + G  ++++ +P DD  T+ LL    T+GIFQ+
Sbjct: 603  SVGMLKVDFLGLKTLTSIHIAMRAIEKKTGKLLEMASLPLDDKTTFALLHQGKTMGIFQM 662

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES GM++  + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++ +LK
Sbjct: 663  ESKGMQELAKNLRPDSFEEIIAIGALYRPGPMDMIPSFINRKHGKEIIEYDHPLMESILK 722

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  ++M K++ RF   A KNGI  
Sbjct: 723  ETYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAMGKKDIDQMLKERTRFCERARKNGIDA 782

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +A  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EKI 
Sbjct: 783  ELATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTSDSDDIEKIG 842

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862
            K   +A   +I I+PP +N    DF   D  I +++ AI+G+G      I+E      P+
Sbjct: 843  KLIHEAHSMDICILPPDINESGTDFVATDKGIRFAMGAIRGIGKGLVESIIEEREKHGPY 902

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             S+ DF  R D KK+ ++  E+L+ AG  D F   R     +L+++       +K     
Sbjct: 903  QSIRDFIQRSDLKKVTKKHTENLIDAGCFDVFEPDRDVAQATLESLYDSISKEKKEAATG 962

Query: 923  HENIFAHEKGTFSDKITLEKFS---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                F+         I L   +     +     + E+ +LG Y + HP+D  K IL ++ 
Sbjct: 963  VMTFFSLNAMHQKHPIPLTPATNVVRRSKKDILKKEKELLGIYLTEHPMDAVKDILPRLS 1022

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFFP 1033
            +    E      G  IR   ++     + + KG R    +  ++    YE   +P
Sbjct: 1023 VVSPGEFANLPHGAVIRTIFIIDKVTTRISSKGQRKFALLRVNDGVDSYELPIWP 1077


>gi|289705613|ref|ZP_06502003.1| DNA polymerase III subunit alpha [Micrococcus luteus SK58]
 gi|289557663|gb|EFD50964.1| DNA polymerase III subunit alpha [Micrococcus luteus SK58]
          Length = 1198

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/1067 (32%), Positives = 534/1067 (50%), Gaps = 52/1067 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YS+L+GA  L+++  +       ++AITD   LF A +F  KA AAG++PI
Sbjct: 17   FVHLHTHTEYSMLDGAAKLDDLFAEAQRLGMDSLAITDHGYLFGAYDFWSKAKAAGVKPI 76

Query: 71   IGCQLDIDMQDNLKMTNQ------------GKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            IG +  +      +   +              +       + LL  T EG   L  + S 
Sbjct: 77   IGLEAYVAPGHQHRTDKEKTRWGEPHQRGDDVSGGGAYTHMTLLSETTEGMHNLFRMGSI 136

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L     +  R+    L +  ++GLI  TG  SG +         + A +    F+ +F
Sbjct: 137  ASLDSVYAKWPRLDRELLSQY-SKGLIATTGCPSGEVQTRLRLGQYREAMQAASDFRDIF 195

Query: 179  G-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            G D  Y  +  H    +R   + + +LA    LP VATN+  +  E D +AH+ L+A+  
Sbjct: 196  GKDNYYCEVMHHGLDIERRVVTDLRRLAKDLGLPFVATNDLHYTHEHDAKAHEALLALQS 255

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP--- 293
             + +++    +             +     + E      E       I +          
Sbjct: 256  GSKLNEPSYDQGGSRFAFSGTEYYLKSPRQMRELFAELPEACDNTLLIAERCEVEFDTKA 315

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             ++        ++E + L  +  +GL  R   G           R++ D+EL+VI  M F
Sbjct: 316  NYMPVFPTPEGEDETSWLIKEVASGLAYRYPDGV------PDHVRKQADYELDVIISMGF 369

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYAL ITD+DPL+  L+FERFLNPDR+
Sbjct: 370  PGYFLVVADFINWAKENGIRVGPGRGSGAGSMVAYALRITDLDPLKHGLIFERFLNPDRV 429

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPDFD+DF   RR EVI YV  KYG ERV  I+T+G+++ K AL+D  R +  P+S  +
Sbjct: 430  SMPDFDVDFDDRRRSEVIDYVTRKYGDERVTMIVTYGTIKTKQALKDSARVMDQPFSMGE 489

Query: 474  RLCKL-IPNDPAHPVSLQAIADDSR--------FREARLADPSVDRLLEISQKLEGLYRH 524
             L K   P   A  + L+ I D +         FRE    DP    + E ++ LEGL R 
Sbjct: 490  SLTKALPPAVMAKDIPLKDIEDPAAPRYGEAAPFRELVATDPVAKEVFETAKGLEGLKRQ 549

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HAAG+++   P+  ++P+ R ++    +TQF+    E  GLIK DFLGL+ LT++  
Sbjct: 550  WGVHAAGVIMSSAPVIDVIPIMRRLQDGQVITQFDYPMAESLGLIKMDFLGLRNLTIISD 609

Query: 585  SLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +++ +        DL  +  DD   Y LL    TLG+FQL+   MR  L+ M+PD  EDI
Sbjct: 610  AIENVKANQGVDLDLETLDVDDPAAYELLARGDTLGVFQLDGGPMRSLLKMMRPDNFEDI 669

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQVMQ 697
             A ++LYRPGP+  ++   Y  RKNG+++I  IHP ++      L  T G+I+YQEQVM 
Sbjct: 670  SATIALYRPGPMGANSHTNYALRKNGQQEITPIHPELEEPLREILDTTYGLIVYQEQVMA 729

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IAQ ++GYSL +AD+LRRAMGKK K E+DKQ E F  G    G S+     ++++L  F+
Sbjct: 730  IAQKVAGYSLGQADILRRAMGKKKKSELDKQYEAFHQGMLDRGYSEAAVKALWDILLPFS 789

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            DY FNK+H+AAY ++SY TA++K HYP E++AA +T   D+ +K+  +  + R   I ++
Sbjct: 790  DYAFNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKLAMYLNECRHMGITVL 849

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKK 876
            PP VN   + F      I + + A++ VG    + +++   D   +    DF ++V    
Sbjct: 850  PPDVNESHLTFTPVGRDIRFGMGAVRNVGANVVKGMVQGREDGGSYTGFGDFLAKVPLVV 909

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH--ENIFA-----H 929
             N+R +ES++ AGA D  GY+R  LL   +         ++   +     ++FA      
Sbjct: 910  CNKRTIESMIKAGAFDSLGYARRALLAVHEEAVDATVAQKRKEDHGEFTFDLFALGGNDE 969

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
            +    +D + +          +   E+ +LG Y S HPL     +L +         +  
Sbjct: 970  DDSDAADGVAVPDLPEWAKKEKLAFEREMLGLYVSDHPLQGLDGVLAQHADVQISRVLDD 1029

Query: 990  ---IRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEANFF 1032
                 G  + +A ++ + +++  +  G+        +     +  FF
Sbjct: 1030 DGPADGAIVTIAGLITTLERRIAKSSGNAYARCEIEDLGGSMDVMFF 1076


>gi|297153520|gb|ADI03232.1| DNA polymerase III subunit alpha [Streptomyces bingchenggensis BCW-1]
          Length = 1233

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/1085 (30%), Positives = 544/1085 (50%), Gaps = 66/1085 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S  FVHL  H+ YS+L+GA  L  +  ++A    PAIA++D  N+F A EF+Q A  
Sbjct: 36   MPDS--FVHLHNHTEYSMLDGAQKLKPMFGEVARQGMPAIAMSDHGNMFGAYEFAQVAKG 93

Query: 65   -AGIQPIIGCQLDIDMQDNLKMTN------------------QGKTPFPTVPSIVLLVST 105
              GI+PIIG +  +                            +  +       + +    
Sbjct: 94   FEGIKPIIGIEAYVAPSSRFVRKQEFWGPGGRRATSADGEGSKDVSGGGRFTHLTMWARN 153

Query: 106  AEGYQRLIELVSRMYLLDQGK-QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS 164
            ++G + L  L ++     Q      R+    + +   +G+I  TG  SG +      N  
Sbjct: 154  SQGLRNLFWLSTQASYEGQFPAGKPRMDRELIADRP-DGIIATTGCPSGEVQTRLRLNQY 212

Query: 165  QVAEKRLLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSE 222
              A+     ++++FG +  ++ L  H    +R     +++LA    +PL+ATN++ +++E
Sbjct: 213  AEAKAAAAAYQEIFGRENYFLELMDHGLDIEREVREGLLRLATELNIPLLATNDAHYVTE 272

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            +  +AHD L+ +          R R     +YLK  +EM S+FS+LPEA +NT+ IA R 
Sbjct: 273  DQADAHDSLLCIGVGKNKDDPGRFRFNGSGYYLKTAAEMRSLFSELPEACDNTLLIAERI 332

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
                +V   +             + +E+ LR + + GL +R            Q    R 
Sbjct: 333  ESYDEVFDYVDEMPRFP-GVPEGETQESWLRKEVLEGLAMRYG------APVPQHILDRF 385

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + E++VI  M FS YFL+VAD  + A++N IP+GPGRGS  GS+ AYA  IT++ PL   
Sbjct: 386  ETEMSVIGPMGFSSYFLVVADICRHARENKIPLGPGRGSCTGSIVAYATRITELCPLEHG 445

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R++ PD D+DF   +RD ++RYV  KYG E  A + TFG ++AK A++D 
Sbjct: 446  LLFERFLNPERINPPDVDLDFDDRQRDRMVRYVTEKYGEEYTAMVNTFGKIKAKNAIKDS 505

Query: 462  GRALQMPYSQVDRLCKLIPNDPAH---------PVSLQAIADDSRFREARLADPSVDRLL 512
             R L  PYS  +R+ K +P D              S +   +    R+    +  V R++
Sbjct: 506  SRILGYPYSHGERITKALPPDQNGKSAPLAAVFDSSHERYGEAGEIRQMYDNEQDVKRVI 565

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
            + ++ +EGL R    HAA +++    L+  +P++      + +T F+    E  GLIK D
Sbjct: 566  DTARGVEGLTRGTGVHAAAVILSKTKLTDRIPLHMRASDGVKITGFDYPSCEAMGLIKMD 625

Query: 573  FLGLKTLTLLQKSLDFLAQRGV-----------KVDLSLIPFDDHETYHLLTTKGTLGIF 621
            FLGL+ L ++ ++++ + +                   +IP DD  TY LL    T G+F
Sbjct: 626  FLGLRNLGVIDQAIENIRENRGTSLATVDPLDGDPSTVVIPLDDATTYRLLAEGNTFGVF 685

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLID 679
            QL+  GMR  L+ M+P   EDI A+ +LYRPGP+  +    Y +RK G+++I  IHP + 
Sbjct: 686  QLDGGGMRVLLKQMEPTRFEDIAAVNALYRPGPMAANAHTNYAHRKTGRQEITPIHPELR 745

Query: 680  ----PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
                P+L  T  +++YQEQ+M IA+ L+GY+L  AD+LRRAMGKK  E +  + ++F SG
Sbjct: 746  DALEPILGNTFHLLVYQEQIMAIARELAGYTLGGADLLRRAMGKKKPEVLAAEWDKFHSG 805

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
               NG  +     +++++  F+ Y FNKSH A Y ++SY TA++K +YP E++AA +T  
Sbjct: 806  MRGNGYGEEAIKALWDVMLPFSGYAFNKSHTAGYGLVSYWTAYLKANYPAEYMAALLTSV 865

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM- 854
             D+ +K   +  DAR+  ++++ P VN    +F    + + + L +++ VG      ++ 
Sbjct: 866  GDDKDKAAIYLADARKNGVRVLQPDVNESVAEFTAVGDDVRFGLRSVRNVGDNVIEAVID 925

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
                   F S  DF  +VD   LN+R  ESL+ AG  D  G+SR  L    ++       
Sbjct: 926  ARRRKGKFSSFADFLDKVDLPALNKRAAESLIKAGTFDSLGHSRKGLTAIHEDAIDAIIP 985

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITL-----EKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            V+K  +   +++FA   G  S +           +          E+ +LG Y S HPLD
Sbjct: 986  VKKAASFGQDDLFADLGGEGSSEPAFGLDFPVDDTEWPRRQLLATEREMLGLYVSAHPLD 1045

Query: 970  VYKPILRKMGIKGYEESVAT-IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
              + IL +       E +A+     +++L+ ++   Q K T++G+    V  ++     E
Sbjct: 1046 GAEHILSRARDCSIAELLASGRTTGDVQLSGLITGIQLKMTKQGNAWAIVNLADRDAGIE 1105

Query: 1029 ANFFP 1033
              FFP
Sbjct: 1106 VLFFP 1110


>gi|225021950|ref|ZP_03711142.1| hypothetical protein CORMATOL_01982 [Corynebacterium matruchotii ATCC
            33806]
 gi|224945236|gb|EEG26445.1| hypothetical protein CORMATOL_01982 [Corynebacterium matruchotii ATCC
            33806]
          Length = 1203

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/1073 (30%), Positives = 516/1073 (48%), Gaps = 47/1073 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +   + K  SFVHL  H+ YS+L+G   ++ + ++       A+ +TD  N+F +  F +
Sbjct: 14   MMASMAKKSSFVHLHNHTEYSMLDGMAKIDMLAEEATRLGMSAVGMTDHGNMFGSDSFYR 73

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQ----------GKTPFPTVPSIVLLVSTAEGYQ 110
                AGI+PIIG +  +       M  Q            +         ++  TAEG  
Sbjct: 74   AMTKAGIKPIIGIEAYLAPGSRFDMKRQRWGDESQKSDDVSASGAYLHQTMIAETAEGLH 133

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L  L S      Q  +  R+    + E    G+I  TG  SG I           A + 
Sbjct: 134  NLFYLSSMASYEGQLGKWPRMDAELIAE-HATGIIGTTGCPSGDIQTRLRLGQFDKALET 192

Query: 171  LLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
               ++ ++G D  ++ L  H    +    S+++++    +LP + TN+  ++ E    AH
Sbjct: 193  AAMWQDIYGRDNFFLELMDHGLNIENRVRSELLEIGRRLDLPPLVTNDCHYVLESQAHAH 252

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQ 286
            +V++ V     +S  DR +     Y    +E +    D   P+A +NT+ IA R      
Sbjct: 253  EVMLCVQTGKTMSDPDRFKFDGTGYFVKSAEQMRELWDDLVPDACDNTLWIAERVQDYSS 312

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
            +        +              LR++ + GL                +Y +R ++E+ 
Sbjct: 313  IWEAHPYDRMPIADVPEGHTPTTWLRHQVLDGLR-----DRFDGAEVPANYIERAEYEIG 367

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI    +  YFLIVA+ I+ A+   I VGPGRGS AGS+ AYALTIT+IDP+   LLFER
Sbjct: 368  VIDMKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGSLVAYALTITNIDPIHHGLLFER 427

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR--A 464
            FLNP+R S PD DIDF   RR E+IRY   ++G +++AQ+ITFG+++ K A++D  R   
Sbjct: 428  FLNPERPSAPDIDIDFDDRRRGEMIRYASERWGEDKIAQVITFGTVKTKQAIKDSARALY 487

Query: 465  LQMPYSQVDRLCK-LIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEIS 515
             Q  Y   DR+ K L P   A  +S             +    R+    DP V ++ + +
Sbjct: 488  GQPGYQIADRITKVLPPPIMAKDISLAGIMDPEHDRYTEAGEVRQLIETDPDVRQIYDTA 547

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + LEG+ R A  HA  +++   PL   +PM++       +T +     E  GL+K DFLG
Sbjct: 548  RGLEGVVRQAGVHACAVIMASVPLLDCIPMWKRAADGALITGWPYPACEAIGLLKMDFLG 607

Query: 576  LKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L+ LT++  +L+ +   R   +DL  +   D   Y LL    TLG+FQL+S GM++ L  
Sbjct: 608  LRNLTVIGDALENIKINRDETIDLENLAITDPNVYKLLARGDTLGVFQLDSGGMQELLRR 667

Query: 635  MQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDP----MLKETQGV 688
            MQP    DI+A ++LYRPGP+  +  + Y +RKNG++ I  IHP ++     +L ET G+
Sbjct: 668  MQPTEFNDIVAALALYRPGPMGVNAHLDYADRKNGRKPITPIHPELEEALKDILDETYGL 727

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            I+YQEQ+M+I++ ++ Y+  EAD  R+AMGKK  E +  + E+F +G   NG SK     
Sbjct: 728  IVYQEQIMEISRRVANYTAGEADGFRKAMGKKKPEVLAAEYEKFSAGMFSNGYSKDAVDA 787

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++  +  FA Y FNKSHAA Y ++SY TA++K +Y  E++AA +T   D  +K   +  +
Sbjct: 788  LWGTIEPFASYAFNKSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVSDKKDKSAIYLAN 847

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLED 867
             R   I ++ P VN    +F      I + L A++ VG      I+        +    D
Sbjct: 848  CRHLGIAVLSPDVNESAYNFLPVGQDIRFGLGAVRNVGEDVVASIVRERKAKGLYKDFTD 907

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            +  ++D    N+RV ESL+ AGA D  GYSR  L+   ++    A   +K       ++F
Sbjct: 908  YLEKIDLTACNKRVTESLIKAGAFDSMGYSRKGLMMVFEDAVDAAIGPKKAMDKGQFDLF 967

Query: 928  AHEKGTFSDKITL----EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            +   G       +          +   +   E+ +LG Y SGHPLD ++  L        
Sbjct: 968  SALGGESEVTENVFSISVPDDTWDRKHQLALERDMLGLYVSGHPLDGFEEALDAQVDTSL 1027

Query: 984  E--ESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
                S     G  +++  ++ +  ++ ++K GS    VT  +    + E   F
Sbjct: 1028 SVVASEELKNGAEVQIGGIISAVDRRVSKKDGSPWAIVTIEDQHGVQVEMLVF 1080


>gi|239917850|ref|YP_002957408.1| DNA-directed DNA polymerase III PolC [Micrococcus luteus NCTC 2665]
 gi|281413657|ref|ZP_06245399.1| DNA polymerase III subunit alpha [Micrococcus luteus NCTC 2665]
 gi|239839057|gb|ACS30854.1| DNA-directed DNA polymerase III PolC [Micrococcus luteus NCTC 2665]
          Length = 1198

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/1067 (32%), Positives = 534/1067 (50%), Gaps = 52/1067 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YS+L+GA  L+++  +       ++AITD   LF A +F  KA AAG++PI
Sbjct: 17   FVHLHTHTEYSMLDGAAKLDDLFAEAQRLGMDSLAITDHGYLFGAYDFWSKAKAAGVKPI 76

Query: 71   IGCQLDIDMQDNLKMTNQ------------GKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            IG +  +      +   +              +       + LL  T EG   L  + S 
Sbjct: 77   IGLEAYVAPGQQHRTDKEKTRWGEPHQRGDDVSGGGAYTHMTLLSETTEGMHNLFRMGSI 136

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              L     +  R+    L +  ++GLI  TG  SG +         + A +    F+ +F
Sbjct: 137  ASLDSVYAKWPRLDRELLSQY-SKGLIATTGCPSGEVQTRLRLGQYREAMQAASDFRDIF 195

Query: 179  G-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            G D  Y  +  H    +R   + + +LA    LP VATN+  +  E D +AH+ L+A+  
Sbjct: 196  GKDNYYCEIMHHGLDIERRVVTDLRRLAKDLGLPFVATNDLHYTHEHDAKAHEALLALQS 255

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP--- 293
             + +++    +             +     + E      E       I +          
Sbjct: 256  GSKLNEPSYDQGGSRFAFSGTEYYLKSPRQMRELFAELPEACDNTLLIAERCEVEFDTKA 315

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             ++        ++E + L  +  +GL  R   G           R++ D+EL+VI  M F
Sbjct: 316  NYMPVFPTPEGEDETSWLIKEVASGLAYRYPDGV------PDHVRKQADYELDVIISMGF 369

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYAL ITD+DPL+  L+FERFLNPDR+
Sbjct: 370  PGYFLVVADFINWAKENGIRVGPGRGSGAGSMVAYALRITDLDPLKHGLIFERFLNPDRV 429

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            SMPDFD+DF   RR EVI YV  KYG ERV  I+T+G+++ K AL+D  R +  P+S  +
Sbjct: 430  SMPDFDVDFDDRRRSEVIDYVTRKYGDERVTMIVTYGTIKTKQALKDSARVMDQPFSMGE 489

Query: 474  RLCKL-IPNDPAHPVSLQAIADDSR--------FREARLADPSVDRLLEISQKLEGLYRH 524
             L K   P   A  + L+ I D +         FRE    DP    + E ++ LEGL R 
Sbjct: 490  SLTKALPPAVMAKDIPLKDIEDPAAPRYGEAAPFRELIATDPVAKEVFETAKGLEGLKRQ 549

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
               HAAG+++   P+  ++P+ R ++    +TQF+    E  GLIK DFLGL+ LT++  
Sbjct: 550  WGVHAAGVIMSSVPVIDVIPIMRRLQDGQVITQFDYPMAESLGLIKMDFLGLRNLTIISD 609

Query: 585  SLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            +++ +        DL  +  DD   Y LL    TLG+FQL+   MR  L+ M+PD  EDI
Sbjct: 610  AIENVKANQGVDLDLETLDVDDPAAYELLARGDTLGVFQLDGGPMRSLLKMMRPDNFEDI 669

Query: 644  IALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQVMQ 697
             A ++LYRPGP+  ++   Y  RKNG+++I  IHP ++      L  T G+I+YQEQVM 
Sbjct: 670  SATIALYRPGPMGANSHTNYALRKNGQQEITPIHPELEEPLREILDTTYGLIVYQEQVMA 729

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IAQ ++GYSL +AD+LRRAMGKK K E+DKQ E F  G    G S+     ++++L  F+
Sbjct: 730  IAQKVAGYSLGQADILRRAMGKKKKSELDKQYEAFHQGMLDRGYSEAAVKALWDILLPFS 789

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            DY FNK+H+AAY ++SY TA++K HYP E++AA +T   D+ +K+  +  + R   I ++
Sbjct: 790  DYAFNKAHSAAYGLVSYWTAYLKAHYPAEYMAALLTSVGDDKDKLAMYLNECRHMGITVL 849

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKK 876
            PP VN   + F      I + + A++ VG    + +++   D   +    DF ++V    
Sbjct: 850  PPDVNESHLTFTPVGRDIRFGMGAVRNVGANVVKGMVQGREDGGSYTGFGDFLAKVPLVV 909

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH--ENIFA-----H 929
             N+R +ES++ AGA D  GY+R  LL   +         ++   +     ++FA      
Sbjct: 910  CNKRTIESMIKAGAFDSLGYARRALLAVHEEAVDATVAQKRKEDHGEFTFDLFAPGGGDE 969

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
            +    +D + +          +   E+ +LG Y S HPL     +L +         +  
Sbjct: 970  DDSDAADGVAVPDLPEWAKKEKLAFEREMLGLYVSDHPLQGLDGVLAQHADVQISRVLDD 1029

Query: 990  ---IRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEANFF 1032
                 G  + +A ++ + +++  +  G+        +     +  FF
Sbjct: 1030 DGPADGAIVTIAGLITTLERRIAKSSGNAYARCEIEDLGGSMDVMFF 1076


>gi|296117566|ref|ZP_06836150.1| DNA polymerase III, alpha subunit [Corynebacterium ammoniagenes DSM
            20306]
 gi|295969297|gb|EFG82538.1| DNA polymerase III, alpha subunit [Corynebacterium ammoniagenes DSM
            20306]
          Length = 1192

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/1072 (28%), Positives = 516/1072 (48%), Gaps = 50/1072 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+ SFVHL  H+ +S+L+G   ++ + ++++  + PA+ +TD  N+F +  F ++   
Sbjct: 4    MAKNSSFVHLHNHTEFSMLDGMAKVDLLAEEVSRQEMPAVGMTDHGNMFGSDAFYRRMTK 63

Query: 65   AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG++PIIG +  +                       +         +L   A G   L +
Sbjct: 64   AGVKPIIGIEAYMAPGSRFNKKRQLWGTPDQKRDDVSASGAYLHQTMLAENATGLSNLFK 123

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   +G+I  TG  SG +           A +    +
Sbjct: 124  LSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFDEALEAAAMW 182

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++G D  ++ L  H    ++     ++++    +LP + TN+  ++ E    +H+ ++
Sbjct: 183  QDIYGRDNYFLELMDHGLDIEKRTRDGLLEIGRKLDLPPLVTNDCHYVLESQAPSHEAML 242

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAP 290
             V     +   DR +     Y    +E +    D       +NT+ IA R      +   
Sbjct: 243  CVQTGKTLMDPDRFKFDGTGYYIKTAEQMRELWDHMVPDGCDNTLWIAERVESYDSLWEE 302

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +              L ++ + GL+              ++Y +R ++E++VI  
Sbjct: 303  HSHDRMPVADVPEGHTPTTWLTHEVMEGLK-----DRFDGKEVPEEYIKRAEYEISVIDM 357

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LLFERFLNP
Sbjct: 358  KGYPSYFLIVAEIIKHARSIGIWVGPGRGSAAGALVAYALTITNIDPIEHDLLFERFLNP 417

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R S PD DIDF   RR E+I+Y   ++G +++AQ+ITFG+++ K A++D  +       
Sbjct: 418  ERPSAPDIDIDFDDRRRGEMIQYAAERWGEDKIAQVITFGTVKTKQAIKDAAKVHFGQPG 477

Query: 471  QVDR---LCKLIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLE 519
                      L P   A  +          +  ++ +  R+    DP V ++ + ++ LE
Sbjct: 478  FQMADRINGALPPAVMAKDIPLAGITDPEHERYSEAAEVRQMVETDPDVKKIYDTARGLE 537

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R A  HA  +++    L   +PM++       +T ++    E  GL+K DFLGL+ L
Sbjct: 538  GVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMDFLGLRNL 597

Query: 580  TLLQKSLDFLAQRGVKV----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            T++  +L  + +         DL        + Y LL++  TLG+FQL+S GM++ L+ M
Sbjct: 598  TVIGDALANIKKNRGIDLNLEDLHADDPQVSKVYDLLSSGDTLGVFQLDSGGMQELLKRM 657

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVI 689
            +P   +DI+A ++LYRPGP+  +    Y +RKNG+++I  IHP ++  L     ET G+I
Sbjct: 658  KPTGFKDIVASLALYRPGPMGVNAHWNYADRKNGRQEITPIHPELEEPLSEILGETYGLI 717

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQ+M+I+Q L+ Y+  EAD  R+AMGKK  E + ++ E+F  G   NG SK     +
Sbjct: 718  VYQEQIMRISQKLANYTAGEADGFRKAMGKKKPEVLAQEYEKFSQGMFTNGYSKGAVDAL 777

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +  +  FA Y FNKSHAA Y ++S+ TA++K ++  E++AA +T   D  +K   +  D 
Sbjct: 778  WGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYFAPEYMAALLTSVADKKDKSAIYLADC 837

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDF 868
            R   I+++PP VN    DF+   + I + + AI+ VG+     I+EA  D   F S  D+
Sbjct: 838  RHLGIKVLPPDVNESAEDFEAVGDDIRFGMGAIRNVGSEVVESIIEARRDKGAFKSFSDY 897

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              ++      +RV ESL+ AGA D  G+ R  L+   ++     Q  +K       ++FA
Sbjct: 898  LDKISLVACTKRVTESLIKAGAFDSLGHPRKGLMLIQEDAVDSVQSTKKAADKGQFDLFA 957

Query: 929  HEKGTFSDKIT--LEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
               G   + ++           +       E+ +LG Y SGHPLD ++  L         
Sbjct: 958  SFGGDDGESVSSFAIDIPEESWDRKHELALEREMLGLYVSGHPLDGFEDALAAQTDTALT 1017

Query: 985  ESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
              V      G  + +  ++    ++ +++ GS    VT  +    + E   F
Sbjct: 1018 TVVAGEMRNGQEMVIGGIISGVDRRFSKRDGSPWAIVTIEDHHGAQVEILVF 1069


>gi|255326240|ref|ZP_05367326.1| DNA polymerase III subunit alpha [Rothia mucilaginosa ATCC 25296]
 gi|255296694|gb|EET76025.1| DNA polymerase III subunit alpha [Rothia mucilaginosa ATCC 25296]
          Length = 1180

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1069 (34%), Positives = 553/1069 (51%), Gaps = 54/1069 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  F HL VH+ YS+L+GA  L ++          ++A +D   LF A +F ++A A
Sbjct: 1    MA-TKEFTHLHVHTEYSMLDGAARLGDLFTHAKELGMKSMATSDHGFLFGAFDFWRQAKA 59

Query: 65   AGIQPIIGCQLDIDMQDNL---------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
              I+PIIG +  +    +            +    +       + +   T EG   L   
Sbjct: 60   HDIKPIIGVEAYLTPGTHRTDRSRVRWGDGSRDDVSGGGAYTHMTMWAETTEGMHNLFRA 119

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
             S   L  Q     R+    LQ   ++GLI  TG  SG +           A +    F+
Sbjct: 120  SSIASLEGQLY-KPRMDREVLQTY-SKGLIATTGCPSGEVQTRLRLGQFDEAVQAASEFR 177

Query: 176  KLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             +FG D  Y  +  H    +R  +  + +LA    LP VATN+  +  +ED+ AH  L+ 
Sbjct: 178  DIFGKDNFYCEVMDHGLDIERNVQEDLHRLAKKLNLPFVATNDLHYTRQEDHTAHAALLC 237

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            V   + ++   R +    + YL++  EM ++F D+P A ENT+EIA RC+      A  +
Sbjct: 238  VQSGSTLTDPKRFKFDADNFYLRSAEEMYALFGDIPGACENTLEIAERCNVEFNTKANYM 297

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P F   E +     EE+    +   GL  R  QG           R++ ++E+ VI  M 
Sbjct: 298  PNFPVPEGE----NEESWFVKEVEKGLHYRFPQGV------PDTVRKQAEYEVGVITSMG 347

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F GYFL+VADFI WAK+N I VGPGRGSGAGS+ AYA+ ITD++PL   L+FERFLNPDR
Sbjct: 348  FPGYFLVVADFINWAKRNGIRVGPGRGSGAGSMVAYAMRITDLNPLDHDLIFERFLNPDR 407

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPDFD+DF   RR EVI YV  KYG E+VAQI+TFG+++AK AL+D  R +  PYS  
Sbjct: 408  VSMPDFDVDFDDRRRGEVIDYVTEKYGEEKVAQIVTFGTIKAKQALKDASRVMDQPYSVG 467

Query: 473  DRLCKLIPND-PAHPVSLQAIADDSRFREA----------RLADPSVDRLLEISQKLEGL 521
            +RL K +P D     ++L  + ++   R A             D    ++ E ++ LEGL
Sbjct: 468  ERLTKAMPPDVMGKNIALANVYNEEDKRYAEAADLRALIEDPVDKIYGQVFETAKGLEGL 527

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R    HAAG+++  + L  ++P+ R       +TQF+    E  GLIK DFLGL+ LT+
Sbjct: 528  KRQWGVHAAGVIMSSKDLVDVIPVMRREADGQVITQFDYPTCEGLGLIKMDFLGLRNLTI 587

Query: 582  LQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +++ +   RG+ +DL  +  DD E+Y LL    TLG+FQL+   MR  L+ M+P+  
Sbjct: 588  ISDAVENIKSNRGIDLDLESLSLDDPESYRLLARGDTLGVFQLDGGPMRSLLKLMEPEEF 647

Query: 641  EDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVIIYQEQ 694
            E I A+++LYRPGP+  ++   Y  RKNGK++I  IHP ++      L  T G+I+YQEQ
Sbjct: 648  EHISAVLALYRPGPMGANSHTNYALRKNGKQEIEPIHPELEEPLKDILDTTYGLIVYQEQ 707

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VM IAQ ++ Y+L EAD+LRRAMGKK K E+DKQ   F  G   NG S+     ++++L 
Sbjct: 708  VMAIAQKVANYTLGEADLLRRAMGKKKKAELDKQYATFHDGMISNGYSEGAIKALWDILL 767

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+DY FNK+H AAY ++SY TA++K HYP E++AA +T   DN +K+  +  + R   I
Sbjct: 768  PFSDYAFNKAHTAAYGLVSYWTAYLKAHYPQEYMAALLTSVGDNKDKLALYLNECRAMGI 827

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVD 873
             ++ P VN   + F    + I + + AI+ VG      ++ A  +   ++S  DF  +V 
Sbjct: 828  TVLAPDVNESTLTFAPVGDDIRFGMGAIRNVGANVVEGMIAAREEKGRYESFNDFLKKVP 887

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----H 929
             +  N+R +ESL+ AGA D  G++R  L    +     A  V++       ++F      
Sbjct: 888  LQVCNKRTIESLIKAGAFDDLGHTRRSLSLIHEAAVDAAVAVKRKEAAGQFDLFGSLGMD 947

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA- 988
            +       +T+      +   +   E+ +LG Y S HPL   +  L         + +  
Sbjct: 948  DALGDELTVTIPDVPEWDRREKLNFERDMLGLYVSDHPLRGLERALSDAASHSVHDIIGE 1007

Query: 989  ---TIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAK-EYEANFF 1032
                  G  + LA M+    ++  +  G++   V   +P+       FF
Sbjct: 1008 DSHVRDGETVTLAGMLTGVSRRIAKSSGNQYASVELEDPSGATITVMFF 1056


>gi|298244334|ref|ZP_06968140.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963]
 gi|297551815|gb|EFH85680.1| DNA polymerase III, alpha subunit [Ktedonobacter racemifer DSM 44963]
          Length = 1170

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1054 (30%), Positives = 540/1054 (51%), Gaps = 50/1054 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  F HL VH+ YSLL+G   +  ++ +  A     +AITD   ++ A+EF  +    GI
Sbjct: 2    ASDFAHLHVHTEYSLLDGLSRIPTLIKQAKALGMEHLAITDHGAMYGAMEFYLECQKQGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
             P+IG +  +    N K              +VLL  T  GY+ L++L +  +       
Sbjct: 62   HPVIGMEAYLVDDVNYKPKKSN-----AYWHLVLLAHTQAGYENLMKLTTLGFTQGLYYG 116

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-QVAEKRLLTFKKLFG-DRLYVN 185
              RI    L +   EGLI  +    G I            A + +  ++ +FG +  Y+ 
Sbjct: 117  KPRIDKKML-KNHAEGLIATSSCLGGEIPELLVERQDMDSARRAVRWYQDVFGPENFYLE 175

Query: 186  LQRH---RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
             Q+H           + + Q+  +  +P + TN+  +++++   AHD+ + +        
Sbjct: 176  FQQHYGKGSPQDACNTGLYQIYQSMHVPAILTNDLHYVNKDQANAHDLFLCIQMGNRYDD 235

Query: 243  KDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             DR R  + +++LK+  EM  ++ D+P+ L NTV +A RC          LP F      
Sbjct: 236  PDRFRFDSDEYFLKSPQEMALLYPDIPDVLRNTVLLAERCQIDPTAKKAGLPTFDIPAGF 295

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                  ++ L +  + G            G  +   ++++D+E ++I +  F+ YFLI  
Sbjct: 296  P---SPDDYLYDLCLKGARW-------RFGEVSTSVQEQIDYEFSIIKQKGFASYFLIQQ 345

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D   +A+ + I     RGS AGS+ AY L IT++DPLR+ LLFERF+NP+R  MPD D+D
Sbjct: 346  DVTNYARDHGI-TCLARGSAAGSLIAYCLGITNVDPLRYGLLFERFMNPERNDMPDIDMD 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            +   RR+EVI Y   +YG E+ AQ++TF +L AK +++DV RAL       +R+ +LIP 
Sbjct: 405  YPDSRREEVINYTMQRYGLEKTAQMVTFNTLAAKGSVKDVARALGKT-DLGERITRLIPT 463

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P   +   ++ D +  R     +  V  +++ +++LEGL R    HAAG+++  RPL++
Sbjct: 464  GPKVTL-QSSLDDVAELRMLYTQNGEVSEIIDFARQLEGLNRSTGVHAAGVLLSARPLNE 522

Query: 542  LVPMYRDVRSDLP---VTQFNMKWIEKA-GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            +VP+ R    D     V  +  KW+E   GLIK+DFLGL  L++L+++L+F+A+   +  
Sbjct: 523  IVPLSRKDPKDPTTPLVCGYEHKWLEDNLGLIKYDFLGLANLSVLREALNFVARTQGEEL 582

Query: 598  LSLIPF-----------DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            L                   + + +L+    + +FQLES+ MR+ L+ ++P CIEDI+A+
Sbjct: 583  LLEHIPVDPTPDPVLRERREKAFAMLSRGDAIAVFQLESAKMREYLKQLKPTCIEDIMAM 642

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            V+LYRPGP+D+I  +   K+G++KI  + P +   L E+ GVI+YQ+QV+QIA  L+G+S
Sbjct: 643  VALYRPGPMDSIPEFVACKHGRKKIEYLDPRLSEWLAESYGVIVYQDQVLQIANNLAGFS 702

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
              + +  R+A+ KK  EE++  K  FI G   NG+    A  +FEL+  F  YGFNK+HA
Sbjct: 703  WGKVNKFRKALSKKKMEEVEGYKGDFIQGCVNNGMKAAAAEKLFELVLPFGGYGFNKAHA 762

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A+Y V++Y TA++K +YP E++AA++T +  + +++  F  +A +  ++++ P +N   +
Sbjct: 763  ASYGVVAYYTAYLKANYPAEYMAAALTADAGDSKQVAVFIAEAHKMGVKVLGPDINKSEL 822

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
             F V +  I + L AIKG+G      I+ A   + PF SL DFC RV    + + V+E+L
Sbjct: 823  GFSVEEGNIRFGLLAIKGIGEGPITEILRARTDNGPFTSLVDFCVRV---GVGKGVIENL 879

Query: 886  VFAGALDCFGYS--RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-TLEK 942
            + AGALD       R QLL S++    Y +   + R  +  ++F          + +L +
Sbjct: 880  IKAGALDSLEGEGKRHQLLASVETAITYGKRERQAREREVFSLFKDLASAPVPLVFSLVE 939

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRGN-NIRLAA 999
             +  +     + E+ ++G Y S HPL     +          E +      G   I L  
Sbjct: 940  AAEISRKQLLDWEKELIGIYISPHPLTYLAHLFDGRVTHSTTELLEKGAEVGKGTITLGG 999

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            ++ + +   T+KG  +   T  +         FP
Sbjct: 1000 VITNIRAFSTKKGDMMCSFTLEDAQGGMVVTVFP 1033


>gi|122879149|ref|YP_200601.6| DNA polymerase III subunit alpha [Xanthomonas oryzae pv. oryzae
            KACC10331]
 gi|188577178|ref|YP_001914107.1| DNA polymerase III subunit alpha [Xanthomonas oryzae pv. oryzae
            PXO99A]
 gi|188521630|gb|ACD59575.1| DNA polymerase III, alpha subunit subfamily, putative [Xanthomonas
            oryzae pv. oryzae PXO99A]
          Length = 1196

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1082 (38%), Positives = 601/1082 (55%), Gaps = 78/1082 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVEIDMPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 110  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRDSLAGRLFSEGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGRECEERFNQFALNAAGVRGLPVVASNDVRFLYASDFNAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   YLK+  EM ++F+D+P+A++NT  +A+RC+  +++  
Sbjct: 228  RVCISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   +     +  ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I 
Sbjct: 288  YFLPAYPVPD----DETLDSWIRSQSRDGLAARLEKSPIAPGKTRQDYVDRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
             M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  NMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIPN     +                  +    +  V  L++++++LE L R
Sbjct: 464  GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPELIQRYQVEDDVRDLMDLARQLEDLTR 523

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PLS+  P++ +   D     PVTQF+   +E  GL+KFDFLGL+TL
Sbjct: 524  NAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 583

Query: 580  TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  +  R        VD++ IP DD  TY  +     T  +FQ ESSGMR+ L+
Sbjct: 584  TIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFALGNTGAVFQFESSGMRRLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQE
Sbjct: 644  DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQE 703

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L+
Sbjct: 704  QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 763

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R   
Sbjct: 764  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823

Query: 814  IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871
            + + PP VN     F+    + I Y L AIKGVG      I+E      P+ +L DFC+R
Sbjct: 824  LTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 883

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F    
Sbjct: 884  VGTTKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943

Query: 932  GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
             +    ++ L +           +E+  LGFY SGHP D ++  +R++           +
Sbjct: 944  PSAPAMRLDLPESKEWPLGQLLTSERETLGFYLSGHPFDPHREEVRELVGCDLGALEKIL 1003

Query: 991  RGNN--------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                                      LA  V+  ++    KG    +V   +     E +
Sbjct: 1004 ASQQRGAGGGGGDGEKRAWRPEVSAILAGQVIGVRR----KGDSQVFVQLEDGRGRVECS 1059

Query: 1031 FF 1032
             F
Sbjct: 1060 AF 1061


>gi|58426179|gb|AAW75216.1| DNA polymerase III alpha chain [Xanthomonas oryzae pv. oryzae
            KACC10331]
          Length = 1321

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1082 (38%), Positives = 601/1082 (55%), Gaps = 78/1082 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 127  STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVEIDMPALAVTDLNNL 186

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 187  FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 234

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 235  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRDSLAGRLFSEGRADLAEQQL 292

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 293  ADWQRVFGDGLHLELTRTGRECEERFNQFALNAAGVRGLPVVASNDVRFLYASDFNAHEA 352

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   YLK+  EM ++F+D+P+A++NT  +A+RC+  +++  
Sbjct: 353  RVCISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 412

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   +     +  ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I 
Sbjct: 413  YFLPAYPVPD----DETLDSWIRSQSRDGLAARLEKSPIAPGKTRQDYVDRLEFELDTII 468

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
             M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 469  NMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 528

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 529  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 588

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIPN     +                  +    +  V  L++++++LE L R
Sbjct: 589  GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPELIQRYQVEDDVRDLMDLARQLEDLTR 648

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PLS+  P++ +   D     PVTQF+   +E  GL+KFDFLGL+TL
Sbjct: 649  NAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 708

Query: 580  TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  +  R        VD++ IP DD  TY  +     T  +FQ ESSGMR+ L+
Sbjct: 709  TIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFALGNTGAVFQFESSGMRRLLK 768

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQE
Sbjct: 769  DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQE 828

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L+
Sbjct: 829  QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 888

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R   
Sbjct: 889  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 948

Query: 814  IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871
            + + PP VN     F+    + I Y L AIKGVG      I+E      P+ +L DFC+R
Sbjct: 949  LTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 1008

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F    
Sbjct: 1009 VGTTKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 1068

Query: 932  GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
             +    ++ L +           +E+  LGFY SGHP D ++  +R++           +
Sbjct: 1069 PSAPAMRLDLPESKEWPLGQLLTSERETLGFYLSGHPFDPHREEVRELVGCDLGALEKIL 1128

Query: 991  RGNN--------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                                      LA  V+  ++    KG    +V   +     E +
Sbjct: 1129 ASQQRGAGGGGGDGEKRAWRPEVSAILAGQVIGVRR----KGDSQVFVQLEDGRGRVECS 1184

Query: 1031 FF 1032
             F
Sbjct: 1185 AF 1186


>gi|84623509|ref|YP_450881.1| DNA polymerase III subunit alpha [Xanthomonas oryzae pv. oryzae MAFF
            311018]
 gi|84367449|dbj|BAE68607.1| DNA polymerase III alpha chain [Xanthomonas oryzae pv. oryzae MAFF
            311018]
          Length = 1196

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1082 (38%), Positives = 601/1082 (55%), Gaps = 78/1082 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVEIDMPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 110  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRDSLAGRLFSEGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGRECEERFNQFALNAAGVRGLPVVASNDVRFLYASDFNAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   YLK+  EM ++F+D+P+A++NT  +A+RC+  +++  
Sbjct: 228  RVCISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   +     +  ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I 
Sbjct: 288  YFLPAYPVPD----DETLDSWIRSQSRDGLAARLEKSPIAPGKTRQDYVDRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
             M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  NMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIPN     +                  +    +  V  L++++++LE L R
Sbjct: 464  GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPELIQRYQVEDDVRDLMDLARQLEDLTR 523

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PLS+  P++ +   D     PVTQF+   +E  GL+KFDFLGL+TL
Sbjct: 524  NAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 583

Query: 580  TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  +  R        VD++ IP DD  TY  +     T  +FQ ESSGMR+ L+
Sbjct: 584  TIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFALGNTGAVFQFESSGMRRLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQE
Sbjct: 644  DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQE 703

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L+
Sbjct: 704  QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 763

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R   
Sbjct: 764  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823

Query: 814  IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871
            + + PP VN     F+    + I Y L AIKGVG      I+E      P+ +L DFC+R
Sbjct: 824  LTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 883

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F    
Sbjct: 884  VGTTKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943

Query: 932  GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
             +    ++ L +           +E+  LGFY SGHP D ++  +R++           +
Sbjct: 944  PSAPAMRLDLPESKEWPLGQLLTSERETLGFYLSGHPFDPHREEVRELVGCDLGALEKIL 1003

Query: 991  RGNN--------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                                      LA  V+  ++    KG    +V   +     E +
Sbjct: 1004 ASQQRGGGGGGGDGEKRAWRPEVSAILAGQVIGVRR----KGDSQVFVQLEDGRGRVECS 1059

Query: 1031 FF 1032
             F
Sbjct: 1060 AF 1061


>gi|306836456|ref|ZP_07469431.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium
            accolens ATCC 49726]
 gi|304567675|gb|EFM43265.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium
            accolens ATCC 49726]
          Length = 1190

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/1073 (28%), Positives = 514/1073 (47%), Gaps = 51/1073 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+ SFVHL  H+ +S+L+G   ++ + D++     PA+ +TD  N++ +  F ++  +
Sbjct: 1    MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVVKQNMPAVGMTDHGNMYGSDAFYKRMTS 60

Query: 65   AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG++PIIG +  +  +                    +         ++   A G + L  
Sbjct: 61   AGVKPIIGIEAYMAPESRFNKKRVLWGTPDQKRDDVSASGAYLHQTMIAENATGLRNLFT 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   +G+I  TG  SG +           A +    +
Sbjct: 121  LSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFNEALEAAAMW 179

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++G D  ++ L  H    ++     ++++    +LP + TN+  ++ E    AH+ ++
Sbjct: 180  QDIYGKDNFFLELMDHGLDIEKRTRDGLLEIGRKLDLPPLVTNDCHYVLESQAPAHEAML 239

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAP 290
             V         DR +     Y    +  +    D       +NT+ IA R     +V   
Sbjct: 240  CVQTGKTFMDPDRFKFGGTGYYIKSAAQMRDTWDDLIPDGCDNTLWIAERVQDYSEVWEE 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +            + L ++ + GL+ R            ++Y +R  +E++VI  
Sbjct: 300  HTHDRMPIADVPEGHTPTSWLTHEVMEGLQRRFPG-----RDVPEEYIERAKYEISVIEM 354

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I++A+   I VGPGRGS AG++ AYALTIT+IDPL   LLFERFLNP
Sbjct: 355  KGYPSYFLIVAELIKYARSVGIRVGPGRGSAAGALVAYALTITNIDPLEHDLLFERFLNP 414

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R S PD DIDF   RR E+I Y   ++G ++VAQ+ITFG+++ K A++D  +       
Sbjct: 415  ERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKDSAKVHFGQPG 474

Query: 471  QVDR-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                           + K IP         +  ++ +  R+    DP V ++ + ++ LE
Sbjct: 475  FQMADRINGALPPAIMAKDIPLRGITDPDHERYSEAAEVRQMVETDPDVKKIYDTARGLE 534

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R A  HA  +++    L   +PM++       +T ++    E  GL+K DFLGL+ L
Sbjct: 535  GVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMDFLGLRNL 594

Query: 580  TLLQKSLDFLAQRG----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            T++  +++ + +          L        + Y LL+   TLG+FQL+S GM++ L+ M
Sbjct: 595  TVIGDAIENIKRNRGEEVQLEQLHADDPKVSKVYDLLSRGDTLGVFQLDSGGMQELLKRM 654

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVI 689
            +P   +DI+A ++LYRPGP+  +    Y +RKNG+++I  IHP ++      L ET G+I
Sbjct: 655  KPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLKEILDETYGLI 714

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + +Q ++F SG  +NG SK+    +
Sbjct: 715  VYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWSGMQENGYSKSAMDAL 774

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +  +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K   +  D 
Sbjct: 775  WGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKSAIYLSDC 834

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDF 868
            R   I ++PPSVN    DF+     I + + AI+ VG+     I+ +      F S  D+
Sbjct: 835  RHLGINVLPPSVNESEEDFQAVGEDIRFGMGAIRNVGSEVVESIIASRKAKGAFTSFSDY 894

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              ++D    ++RV E+L+ AGA D F   R  L+   ++     Q  +K       ++FA
Sbjct: 895  LDKIDLAACSKRVTEALIKAGAFDDFQQPRKGLMLIHEDAVDAVQTTKKAADKGQFDLFA 954

Query: 929  HEKGTFSDKIT---LEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
               G                   +       E+ +LG Y SGHPLD ++  L        
Sbjct: 955  GFGGGDDASSEGAFAIDVPDDSWDRKHELALEREMLGLYVSGHPLDGFEEALAAQTNTPL 1014

Query: 984  EESVA--TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
             + +      G  + +  ++    ++ +++ GS    VT  +    + E   F
Sbjct: 1015 TKILNDEVHNGQELIIGGIISGVDRRFSKRDGSPWAIVTVEDHNGAQVEILVF 1067


>gi|227503307|ref|ZP_03933356.1| DNA polymerase III subunit alpha [Corynebacterium accolens ATCC
            49725]
 gi|227075810|gb|EEI13773.1| DNA polymerase III subunit alpha [Corynebacterium accolens ATCC
            49725]
          Length = 1190

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/1073 (27%), Positives = 513/1073 (47%), Gaps = 51/1073 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+ SFVHL  H+ +S+L+G   ++ + D++     PA+ +TD  N++ +  F ++  +
Sbjct: 1    MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVVKQNMPAVGMTDHGNMYGSDAFYKRMTS 60

Query: 65   AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG++PIIG +  +  +                    +         ++   A G + L  
Sbjct: 61   AGVKPIIGIEAYMAPESRFNKKRVLWGTPDQKRDDVSASGAYLHQTMIAENATGLRNLFT 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   +G+I  TG  SG +           A +    +
Sbjct: 121  LSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFNEALEAAAMW 179

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++G D  ++ L  H    ++     ++++    +LP + TN+  ++ E    AH+ ++
Sbjct: 180  QDIYGKDNFFLELMDHGLDIEKRTRDGLLEIGRKLDLPPLVTNDCHYVLESQAPAHEAML 239

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAP 290
             V         DR +     Y    +  +    D       +NT+ IA R     +V   
Sbjct: 240  CVQTGKTFMDPDRFKFGGTGYYIKSAAQMRDTWDDLIPDGCDNTLWIAERVQDYSEVWEE 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +            + L ++ + GL+ R            ++Y +R  +E++VI  
Sbjct: 300  HPHDRMPIADVPEGHTPTSWLTHEVMEGLQQRFPG-----RDVPEEYIERAKYEISVIEM 354

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I++A+   I VGPGRGS AG++ AYALTIT+IDPL   LLFERFLNP
Sbjct: 355  KGYPSYFLIVAELIKYARSVGIRVGPGRGSAAGALVAYALTITNIDPLEHDLLFERFLNP 414

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R S PD DIDF   RR E+I Y   ++G ++VAQ+ITFG+++ K A++D  +       
Sbjct: 415  ERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKDSAKVHFGQPG 474

Query: 471  QVDR-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                           + K IP         +  ++ +  R+    DP V ++ + ++ LE
Sbjct: 475  FQMADRINGALPPAIMAKDIPLRGITDPDHERYSEAAEVRQMVETDPDVKKIYDTARGLE 534

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R A  HA  +++    L   +PM++       +T ++    E  GL+K DFLGL+ L
Sbjct: 535  GVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMDFLGLRNL 594

Query: 580  TLLQKSLDFLAQRG----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            T++  +++ + +          L        + Y LL+   TLG+FQL+S GM++ L+ M
Sbjct: 595  TVIGDAIENIKRNRGEEVQLEQLHADDPKVSKVYDLLSRGDTLGVFQLDSGGMQELLKRM 654

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVI 689
            +P   +DI+A ++LYRPGP+  +    Y +RKNG+++I  IHP ++      L ET G+I
Sbjct: 655  KPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLKEILDETYGLI 714

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + +Q ++F  G  +NG SK+    +
Sbjct: 715  VYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMQENGYSKSAMDAL 774

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +  +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K   +  D 
Sbjct: 775  WGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKSAIYLSDC 834

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDF 868
            R   I ++PPSVN    DF+     I + + AI+ VG+     I+ +      F S  D+
Sbjct: 835  RHLGINVLPPSVNESEEDFQAVGEDIRFGMGAIRNVGSEVVESIIASRKAKGAFTSFSDY 894

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              ++D    ++RV E+L+ AGA D F   R  L+   ++     Q  +K       ++FA
Sbjct: 895  LDKIDLAACSKRVTEALIKAGAFDDFQQPRKGLMLIHEDAVDAVQTTKKAADKGQFDLFA 954

Query: 929  HEKGTFSDKIT---LEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
               G                   +       E+ +LG Y SGHPLD ++  L        
Sbjct: 955  GFGGGDDASSEGAFAIDVPDDSWDRKHELALEREMLGLYVSGHPLDGFEEALAAQTNTPL 1014

Query: 984  EESVA--TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
             + +      G  + +  ++    ++ +++ GS    VT  +    + E   F
Sbjct: 1015 TKILNDEVHNGQELIIGGIISGVDRRFSKRDGSPWAIVTVEDHNGAQVEILVF 1067


>gi|166712747|ref|ZP_02243954.1| DNA polymerase III subunit alpha [Xanthomonas oryzae pv. oryzicola
            BLS256]
          Length = 1196

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/1082 (38%), Positives = 605/1082 (55%), Gaps = 78/1082 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVEIDMPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G +    R F    + +AE++L
Sbjct: 110  SRLLTRAWMEGHRPEGGVAIHPEWLQAGHA-NLFAL-AGRNSLAGRLFSEGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N++ FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGREGEERFNQFALNAAGVRGLPVVASNDARFLYASDFNAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   YLK+  EM ++F+D+P+A++NT  +A+RC+  +++  
Sbjct: 228  RVCISSGRVLDDPKRPRDYSDQQYLKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   E     +  ++ +R+++  GL  RL +  IA G   QDY  RL+FEL+ I 
Sbjct: 288  YFLPAYPVPE----DETLDSWIRSQSRDGLAARLEKSPIAPGKTRQDYVDRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
             M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  NMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIPN     +                  +    +  V  L++++++LE L R
Sbjct: 464  GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPELIQRYQVEDDVRDLMDLARQLEDLTR 523

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PLS+  P++ +   D     PVTQF+   +E  GL+KFDFLGL+TL
Sbjct: 524  NAGKHAGGVVIAPEPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTL 583

Query: 580  TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  +  R        VD++ IP DD  TY  +  +  T  +FQ ESSGMR+ L+
Sbjct: 584  TIIDWAVKAINVRHARAGIDPVDITTIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +LK+T G+++YQE
Sbjct: 644  DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEIILKDTYGIMVYQE 703

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L+
Sbjct: 704  QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLM 763

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R   
Sbjct: 764  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823

Query: 814  IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871
            + + PP VN     F+    + I Y L AIKGVG      I+E      P+ +L DFC+R
Sbjct: 824  LTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTR 883

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V + KLNRR LE+++ AGA+D  G +R  L+  L  + K  + + + R +   ++F    
Sbjct: 884  VGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943

Query: 932  GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
             + S  ++ L +           +E+  LGFY SGHP D ++  +R++           +
Sbjct: 944  PSASAMRLDLPESKEWPLGQLLTSERETLGFYLSGHPFDPHREEVRELVGCDLGALEKIL 1003

Query: 991  RGNN--------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                                      LA  V+  ++    KG    +V   +     E +
Sbjct: 1004 ASQQRGGGGGGGDGEKRAWRPEVSAILAGQVIGVRR----KGDSQVFVQLEDGRGRVECS 1059

Query: 1031 FF 1032
             F
Sbjct: 1060 AF 1061


>gi|329118563|ref|ZP_08247267.1| DNA-directed DNA polymerase III alpha subunit [Neisseria
            bacilliformis ATCC BAA-1200]
 gi|327465298|gb|EGF11579.1| DNA-directed DNA polymerase III alpha subunit [Neisseria
            bacilliformis ATCC BAA-1200]
          Length = 1142

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1038 (37%), Positives = 574/1038 (55%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P ++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F+ ++F +    
Sbjct: 1    MT-APVYIPLRLHTEFSITDGMVRIKEVVKKAQEYGFPALGISDLMNEFALVKFYKACRG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+P+    + I                      +L++    GY RL EL++  Y+ + 
Sbjct: 60   AGIKPVGAADVWI----------GNPAAPDKPFRAMLIIRNEAGYLRLSELLTAAYVGEG 109

Query: 125  GK-QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                   +   WL      GLI L+G   G +       +   A    L +   F +  Y
Sbjct: 110  RNLHHAELNPEWLDSGDNSGLICLSGAHLGEMGVNLLNGNEDAARAAALKYAAWFPNAFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNIHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A    +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSLDDYLVKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++  D+L K
Sbjct: 406  FDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSK 465

Query: 478  LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+    A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + D +       
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQDNIKATTGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  VDVGTIPLDDQAAYKIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEDILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I  +PP +N     F    N+ 
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGITFLPPDINESSYRFVPDGNKQ 823

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I+ A  A   F  L DFC RV    +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESIIAAREAGGKFTGLLDFCERVGKDHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  L+ ++D   + A   +K        +F          + L      + S +  
Sbjct: 884  IEPNRAMLMANIDLAMENAD--QKAANANQGGLFDMMDDAIEP-VKLSAAPAWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y+  +R+               +++R+A      +    + G 
Sbjct: 941  EEKTVIGFYLSGHPFAPYEQEIRRFAPVSLGRLKTQ---DSVRVAGFATGVRTMNGKSG- 996

Query: 1014 RIGWVTFSEPAKEYEANF 1031
            R   V   + +   E + 
Sbjct: 997  RFAIVQLEDRSGFAEVSV 1014


>gi|300871757|ref|YP_003786630.1| DNA polymerase III subunit alpha [Brachyspira pilosicoli 95/1000]
 gi|300689458|gb|ADK32129.1| DNA polymerase III, alpha subunit [Brachyspira pilosicoli 95/1000]
          Length = 1208

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1029 (35%), Positives = 572/1029 (55%), Gaps = 34/1029 (3%)

Query: 17   HSSYSLLEGALSLNNI--------------LDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            H+ YS+L+GA  + ++              +D+      PAIA+TD  N+F A+EF  +A
Sbjct: 2    HTQYSILDGAARIKSLYSKVDKTKRLIPGLIDRAKELDMPAIAMTDHGNMFGAMEFFSEA 61

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               GI PIIGC++ +  +          +   +   +VLL    EGY  L +LV+  Y  
Sbjct: 62   KDKGIIPIIGCEVYVAPKTRFDK-KLDNSEEKSAMHLVLLAKDKEGYNNLCKLVTFGYT- 119

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +      R+    +++   +GLI L+    G I  A      + A K    +K +FG+  
Sbjct: 120  EGFYYRPRVDHELIEKY-NKGLICLSACMGGEIPIAIRKKDYKQASKLAEYYKSIFGEDF 178

Query: 183  YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ LQ H    D+   S + +LA  H + LV TN+  ++S+ED +AH++L+A+     + 
Sbjct: 179  YIELQDHGLAEDKTLNSALYKLANHHNIELVVTNDVHYVSKEDAKAHEILLAIQTKATLD 238

Query: 242  QKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               R +  + + +LK   EM   F+ LP+A ENTV+IA +C     ++      ++    
Sbjct: 239  SPRRYKFPSNEFHLKTEEEMKKSFAKLPKAFENTVKIAEQCK---DLNIMTKTYYMPNYE 295

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                + E   LR   + GL               ++  +RLD EL VIA+M F GYFL+V
Sbjct: 296  LPNGETETTALRKMCIEGLNKHYNND------IPKEAMERLDMELGVIAKMGFEGYFLVV 349

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             DFI +A+ +++ VGPGRGS AGS+ A+A  IT ++PL ++LLFERFLNP+R SMPD D+
Sbjct: 350  QDFINYARNHDVAVGPGRGSAAGSIVAFASGITKVNPLDYNLLFERFLNPERKSMPDIDV 409

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  D+R+ VI YV NKYG + V+QI TFG+L  ++ +RDV R + +  +  DRL K IP
Sbjct: 410  DFQDDKREVVIDYVTNKYGKDNVSQIATFGALGGRSVIRDVCRVMGIDLATADRLAKSIP 469

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
            +D    V +    D + FR+       +  + EIS +L+GL R+   HAAG++I   P++
Sbjct: 470  DDIKRVVDIYDHPDCAEFRKEIDNSRELKNMYEISMRLDGLVRNVGLHAAGVIISSHPIA 529

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
             L P+Y+D ++     Q+ M ++E AGLIK DFLG+K L L++ ++  + +R   ++D+ 
Sbjct: 530  DLAPVYQDSKTGTRACQYEMTYVESAGLIKMDFLGIKNLRLIKDAIKDIKERYGKEIDID 589

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD   Y +     T G+FQ ES GMRQ L  +QP   +D+++ V+L+RPGP+ + +
Sbjct: 590  KIPLDDEAVYKIFRHADTGGVFQFESPGMRQMLLNIQPTAFDDLVSSVALFRPGPLKSGM 649

Query: 660  --VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
               Y +RKN +++IV  HP ++P+LKE+QGV+IYQEQ+M I++ + G++ +EAD LR+AM
Sbjct: 650  DKDYADRKNKRKEIVYKHPDLEPILKESQGVLIYQEQIMAISRAIGGFTAAEADDLRKAM 709

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKKI E+M+  +E+FISG  + G  + +   +F+ +  FA+YGFNKSH+  YA+I+YQ A
Sbjct: 710  GKKIVEKMNSMREKFISGGLERGYDEELLNYLFDTMKGFAEYGFNKSHSVCYALIAYQEA 769

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYY 837
            ++K HYP+E+  A +   + + +KI  +  + +Q NI+++  SV      F   + +I Y
Sbjct: 770  YIKAHYPMEYYVALLNTVIADTDKIALYLNEIKQKNIEVVTASVFESDALFSQKNGKIVY 829

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            +L A+KGVG   A  I E    +  F +LEDF  RVD   +NR+V E+L+  GA   FG+
Sbjct: 830  ALHAVKGVGLQAALAIQEERENNGQFKNLEDFVKRVDVHLVNRKVYETLIKCGAFSDFGH 889

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFEN 954
            +   L+ SLD I  +A   +K   +    +F    E  T S  + +EK     +++  EN
Sbjct: 890  TESALISSLDAILAHASNYQKETLSGQTMLFDSMSEDDTGSASLVIEKQVEYANNILMEN 949

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E+ VLGF    HP   Y   +         E           + A++++  +  T+K S 
Sbjct: 950  EKEVLGFSLRYHPFARYITKIDYKYFNNLLELEELEDKYEFSIPAILMNISEGTTKKNSP 1009

Query: 1015 IGWVTFSEP 1023
            +  +   + 
Sbjct: 1010 MLILKVIDL 1018


>gi|229093701|ref|ZP_04224800.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-42]
 gi|228689586|gb|EEL43394.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-42]
          Length = 1108

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1027 (36%), Positives = 583/1027 (56%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFG-NFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPAFINRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAGRCRVEIPFHVNQLPKFPVP----SNETND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+          G   + +  RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  MYLRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+LV++G  D FG SR  L +SL  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEALVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|152976985|ref|YP_001376502.1| DNA polymerase III DnaE [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025737|gb|ABS23507.1| DNA polymerase III, alpha subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 1109

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1026 (34%), Positives = 575/1026 (56%), Gaps = 46/1026 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + YSLL+ A  ++ ++ +       A+AITD N ++  + F +     GI+PI
Sbjct: 3    FVHLQCQTVYSLLKSACKIDELVARAKELGFSALAITDENVMYGVIPFYKACKKMGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    +  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASVFNEEE-----------ERAYPLVLLAENEVGYQNLLKISSTIMTKSKDG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GL  ++ G  G I++       + AE+   T++ +FG   Y+++Q H 
Sbjct: 108  IPKKWLVHY-AKGLTAISPGKDGEIEQLLLQGKDERAEEVARTYQNMFG-HFYMSVQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++ +      +P+VATN+  ++++ D    + L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKIEEFVRNMNIPIVATNDVRYINQNDALVQECLLSVQSGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+ +EM ++FS + EAL NT+ IA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSAEMEALFSHVEEALRNTIHIAERCHVEIPFHVNQLPKFPVP----TNETSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL           G   + +  RL  EL VI+RM FS YFLIV DF+++A 
Sbjct: 282  AYLRRMCEEGLYK-------RYGTPKEVHVNRLYHELEVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N I  GPGRGS AGS+ AY L ITDIDP+ ++LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENRILTGPGRGSAAGSLVAYVLEITDIDPIAYNLLFERFLNPERVTLPDIDIDFPDVRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDLFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    R+    +   +R+ EI++++EGL RH S HAAG+++   PL++ + +  +
Sbjct: 455  EA-YEESEALRDFIQGNLLYERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTKSIAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  L       G ++D+  +   D +
Sbjct: 513  GHNDVYVTQYPADVLEELGLLKMDFLGLRNLTLLENILTFITTTTGKQIDIRNVSLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+ + SLYRPGP++ I V+   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVVVNSLYRPGPMEQIPVFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +  I  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +++
Sbjct: 633  RRNIQYLHPDLKPILESTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKSRDILEE 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +YP++F
Sbjct: 693  ERKHFVQGCLQNGYDQTSAEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYPLQF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS++     F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKITQYIRETKRKGFCVLPPSLHRSGYHFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E     PF  L +FC R+  K +  R LE+ V++G  D F  SR  L  S+  
Sbjct: 813  ATVTALIEEREKAPFQDLFEFCLRMPVKFVTERNLEAFVWSGCFDDFQVSRTTLFNSIKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA            ++          K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYA------------SLARELGEESVPKSVYVQGKELSFIEQLNKEKETLGFYLSSYP 920

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
               Y  +++++ I    +++   +G   R    +   +  +T+K  ++ +VTF +   E 
Sbjct: 921  TAQYASLVKELEIPSLAQAMRQ-KGKVQRAIVYITRVKIIRTKKMQKMAFVTFCDQNDEM 979

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 980  EAVVFP 985


>gi|283856496|ref|YP_163273.2| DNA polymerase III subunit alpha [Zymomonas mobilis subsp. mobilis
            ZM4]
 gi|283775500|gb|AAV90162.2| DNA polymerase III, alpha subunit [Zymomonas mobilis subsp. mobilis
            ZM4]
          Length = 1174

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/1047 (43%), Positives = 638/1047 (60%), Gaps = 32/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P FV L++ S +++LEGA+   +I         PA  I D N L+  + FS     
Sbjct: 1    MPYTP-FVPLRIFSGFTMLEGAIEPKDITQHAKKMGFPAAGICDRNGLYGVMTFSDSGKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPIIG  L +         +  +     +P   L     +GY  L  LVS  +L   
Sbjct: 60   DGVQPIIGSLLAVARPLRGGEASGQELKIDWLP---LYAQDEDGYNNLCALVSHAHLGRP 116

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    + + +L++  ++GL+ LTGG  G + R         AE  L   +K+F DRLY+
Sbjct: 117  LELPPHVSMEFLEQ-HSQGLLALTGGKEGALARLLAEEQQSEAEAYLTLLQKIFPDRLYI 175

Query: 185  NLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R          + ++ LAY   +PLVATN   FL  + + AHD ++ +A S  V   
Sbjct: 176  ELSRRSEEIEEAAEEGLIDLAYDRNIPLVATNPVCFLEADFHPAHDAMLCIADSAYVDSP 235

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR   +P+ ++K+  EM  +F D+PEA++N++ IA+RC+    V      + I       
Sbjct: 236  DRRHSSPEAWMKSGEEMARLFEDIPEAIQNSLVIAQRCAVAAPV-----RKPILPSLAGD 290

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++ E   LR  A AGLE RLA          + Y +RL +ELN+I  M F GYFLIVADF
Sbjct: 291  REGETLMLRKDAWAGLEARLAAMTTP--VDRKAYEERLQYELNIIENMGFPGYFLIVADF 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N IPVGPGRGSGAGSV A+ALTIT++DPLR  LLFERFLNP+R+SMPDFDIDFC
Sbjct: 349  IKWAKSNQIPVGPGRGSGAGSVVAWALTITNLDPLRLGLLFERFLNPERVSMPDFDIDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            + RR EVI YVQ+KYG + VAQIITFG ++A+A L+D GR LQM Y QVDRL KL+P+  
Sbjct: 409  ETRRSEVISYVQHKYGLDHVAQIITFGRMKARAVLKDTGRVLQMSYGQVDRLAKLVPSQA 468

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            + P +  +A+        A   +  V RLL+++ KLEGL RH+STHAAG+VIGDRPL QL
Sbjct: 469  SDPWTLDRALNGVPEIASAYENEEDVHRLLDLAMKLEGLPRHSSTHAAGVVIGDRPLHQL 528

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD RSD PVTQF+MK++EK GL+KFDFLGLKTL++L K++  L  RGV+VDL  IP
Sbjct: 529  VPLYRDPRSDFPVTQFDMKYVEKTGLVKFDFLGLKTLSVLNKAVQMLKARGVEVDLDHIP 588

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD   + LL    T+G+FQLES GMR+ L  ++P   EDIIALV+LYRPGP+DNI  + 
Sbjct: 589  LDDEAVFELLKQGDTVGVFQLESEGMRRTLAAVKPTRFEDIIALVALYRPGPMDNIPSFG 648

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RKNG E+IV  HPL++P+LKET G+I+YQEQVMQ AQ+L+GYSL EAD+LRRAMGKKI+
Sbjct: 649  ARKNGGEEIVYPHPLLEPVLKETYGIIVYQEQVMQAAQVLAGYSLGEADLLRRAMGKKIQ 708

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EMD Q+ RF+ G+ K+ I++  A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K H
Sbjct: 709  SEMDAQRSRFVEGSKKHDITENQANQLFDLIDKFAGYGFNKSHAAAYALVAYQTAWLKAH 768

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            Y  EF AA+M  +M   +K++ F  D R+  ++ +PP +N    DF V D  + Y+L A+
Sbjct: 769  YRAEFYAAAMCFDMALTDKLQVFVDDMRRSGLRYLPPDINRSQSDFTVEDGCVRYALGAL 828

Query: 843  KGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KGVG      I +    +  F SL+DF +R++ + LNRR LESL  AGA D  G  R  +
Sbjct: 829  KGVGEKAMDDICQEREKNGAFKSLDDFANRINPEHLNRRQLESLASAGAFDSLGVDRCAV 888

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             QS + I   A  + + R +    +F  E+      I L +  + + + R   E+   GF
Sbjct: 889  KQSSEMIIGTAANIHRMRKSGQGGLFGMEEMAM-PSIKLPEDKIWSLTERMNAEKEAFGF 947

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATI--------------RGNNI--RLAAMVVSKQ 1005
            +FS HP+D Y+ +L  + I+   +                   R   I  ++AAM+   +
Sbjct: 948  FFSSHPIDNYRSLLSSLRIRSRADINRLAPPSYPQDDENPQDYRKKRIATQMAAMIEDVR 1007

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + + +G R   V  S+ + ++ A+ F
Sbjct: 1008 WRDSARGRRYMMVAASDASGQFFASCF 1034


>gi|325923963|ref|ZP_08185552.1| DNA polymerase III, alpha subunit [Xanthomonas gardneri ATCC 19865]
 gi|325545546|gb|EGD16811.1| DNA polymerase III, alpha subunit [Xanthomonas gardneri ATCC 19865]
          Length = 1196

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1082 (38%), Positives = 601/1082 (55%), Gaps = 78/1082 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             +  FVHL VH+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  + I             TP  T   + LL    EGY  L
Sbjct: 62   FALVKFYKAAEGVGIKPIAGADVMIA------------TPDMTPWRMTLLCRDREGYLSL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
              L++R ++     +  V I   WLQ      L  L  G      R F    + +AE++L
Sbjct: 110  SRLLTRAWMEGHRPEGGVAIHPEWLQSGHV-NLFAL-AGRDSLAGRLFGEGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++++FGD L++ L R       R +Q  +  A    LP+VA+N+  FL   D+ AH+ 
Sbjct: 168  ADWQRVFGDGLHLELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + ++   V+    RPR  +   YLK+  EM ++F+D+P+A++NT  +A+RC+  +++  
Sbjct: 228  RVCISSGRVLDDPKRPREYSDQQYLKSADEMAALFADVPDAIDNTHALAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +   E     +  ++ +R++A  GL  RL +  IA G   QDY  RL+FEL+ I 
Sbjct: 288  YFLPAYPVPE----DETLDSWIRSQARDGLAARLEKSPIASGKTRQDYVDRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L   Y
Sbjct: 404  PERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFTY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIPN     +                  +    +  V  L++++++LE L R
Sbjct: 464  GLVDSVAKLIPNILGITLKDAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLTR 523

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PLS+  P++ +          VTQF+   +E  GL+KFDFLGL+TL
Sbjct: 524  NAGKHAGGVVIAPEPLSEFCPLFAEHDEGGRGKNQVTQFDKDDVEAVGLVKFDFLGLRTL 583

Query: 580  TLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  +  R        VD++ +P DD  TY  +  +  T  +FQ ESSGMR+ L+
Sbjct: 584  TIIDWAVKAINVRHARAGIDPVDITTLPLDDVPTYKGVFASGNTGAVFQFESSGMRRLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +N RK+G+++I+   P  + +LK+T G+++YQE
Sbjct: 644  DARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIIYPDPRTEAILKDTYGIMVYQE 703

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++  YSL  AD+LRRAMGKK+  EM K +E F  GA+K G+S   A  IF+L+
Sbjct: 704  QVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAHKADEIFDLM 763

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  + R   
Sbjct: 764  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLG 823

Query: 814  IQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871
            + + PP VN     F+    + I Y L AIKGVG      I+E      P+ +L DFC+R
Sbjct: 824  LTVKPPRVNESAYMFEAATPDTIQYGLGAIKGVGQGACEAIIEERQRGGPYTTLLDFCTR 883

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V + KLNRR LE++V AGA+D  G +R  L+  L  + K  + + + R +   ++F    
Sbjct: 884  VGTAKLNRRTLEAMVNAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPD 943

Query: 932  GTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
             +    ++ L +            E+  LGFY SGHP D ++  +R++           +
Sbjct: 944  PSAPALRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHRDEVRELVGCDLGALEKIL 1003

Query: 991  RGNN--------------------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                                      LA +VV  ++    KG    +V   +     E +
Sbjct: 1004 ASQQRGGGGGGGDGEKRAWRPEVSAILAGLVVGVRR----KGDSQVFVQLEDGRGRVECS 1059

Query: 1031 FF 1032
             F
Sbjct: 1060 AF 1061


>gi|171463884|ref|YP_001797997.1| DNA polymerase III, alpha subunit [Polynucleobacter necessarius
            subsp. necessarius STIR1]
 gi|171193422|gb|ACB44383.1| DNA polymerase III, alpha subunit [Polynucleobacter necessarius
            subsp. necessarius STIR1]
          Length = 1205

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1071 (36%), Positives = 587/1071 (54%), Gaps = 67/1071 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P FVHL+VHS +S+ +G + +++ +     D   A+AITD +NLF  + F   A ++GI+
Sbjct: 4    PRFVHLRVHSEFSITDGVVRIDDAVAAAVKDGMGALAITDLSNLFGLVRFYTAARSSGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  + I    +    +           ++LLV    GY  L EL+SR  L +Q +  
Sbjct: 64   PITGADVWISNPQDPDQPH----------RLLLLVQNHSGYLNLCELLSRASLDNQSRGR 113

Query: 129  VRICLSWLQEIGTE------------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
              +  +W  E   +            GLI L+G   G +  A     +  A+     ++K
Sbjct: 114  AEVDSAWFSEPAAKTEDKAAKRTLPYGLIALSGARMGEVGAALLAGQADQAKIVARRYEK 173

Query: 177  LFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            LF    Y+ +QR     D         LA   +LP+VAT+   F+   D+ AH+  + +A
Sbjct: 174  LFPKSFYIEVQRGGNPQDERHLQLACHLASELDLPVVATHPVQFMQRSDFTAHEARVCIA 233

Query: 236  HSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
               ++    R  +   + Y   + EM   F+DLP AL N+VEIA+RC+  L +  P LP 
Sbjct: 234  EGELLGNPRRTKKFNEEQYFLTQEEMEKRFADLPVALANSVEIAKRCNLSLVLGQPRLPD 293

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARM 351
            F            +  L  ++  GLE  + +        A++   Y +RL FE+  I++M
Sbjct: 294  FPTPPG----ITLDEYLLAQSEVGLERHMERNFPDPEERAKEMARYHERLVFEVKTISQM 349

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFLIVADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+
Sbjct: 350  GFPGYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPE 409

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPDFDIDFCQ  RD VI+YV++KYG + V+QI TFG++ A+AA+RDVGR L+  Y+ 
Sbjct: 410  RVSMPDFDIDFCQHGRDRVIQYVKDKYGKDAVSQIATFGTMAARAAIRDVGRVLEQGYNF 469

Query: 472  VDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            VD + KL+PN P   ++++     + +  E    +  V +LL ++Q+LEG+ R+   HA 
Sbjct: 470  VDGIAKLVPNKPGQYMTIEMAKKKEKQLAEREKNEDEVRQLLSLAQQLEGMTRNVGMHAG 529

Query: 531  GIVIGDRPLSQLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            G++I    L+   P+Y    +D  S   ++QF+   +E  GL+KFDFLGL TLT+L  + 
Sbjct: 530  GVLIAPGRLTDFCPLYTQESKDQDSSSVISQFDKDDVEAVGLVKFDFLGLTTLTILAAAE 589

Query: 587  DFLAQ---RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
             ++          ++  IP DD + + +L    T+ +FQLES GM+  L   +PD  EDI
Sbjct: 590  RWIKALHADRRDWNIGEIPLDDEKAFDVLKRANTVAVFQLESRGMQGMLREAKPDRFEDI 649

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            IALV+LYRPGP+D I  +  RK+G++K+    P I+P+L+ET G+++YQEQVMQ+AQ++ 
Sbjct: 650  IALVALYRPGPMDLIPDFIERKHGRQKVEYPDPRIEPVLRETYGIMVYQEQVMQMAQMIG 709

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            GYSL  AD+LRRAMGKK  EEM + ++ F  GA   GIS+  A  I++L+ +FA YGFNK
Sbjct: 710  GYSLGGADMLRRAMGKKKPEEMAQHRKIFSDGAKAGGISEGKANEIYDLMERFAGYGFNK 769

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAAAYA+++YQTAW+K +YP EF+AA+++L MD+ +K+K    D    NI++  P +NT
Sbjct: 770  SHAAAYALLAYQTAWLKAYYPAEFMAANLSLAMDDTDKVKILYDDCLVNNIRVFSPDINT 829

Query: 824  PCVDFKVGD----------NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRV 872
               +F              + + Y L A++G G      I++A     PF  L DFC+RV
Sbjct: 830  GVYEFTPLRAPDAAPDSPISHVRYGLGAVRGTGEAAIESIVKARETGGPFKDLFDFCARV 889

Query: 873  DSKKLNRRVLESLVFAGALDCF-------GYS----RMQLLQSLDNIQKYAQWVEKNRTN 921
            D +++NRR +E+L+ AGA D         G +    R  LL SL          +   + 
Sbjct: 890  DRRQVNRRAIEALMRAGAFDDLYRDSVPAGGNLYDIRSTLLASLAR--AIEAAEQAEASI 947

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
               ++F            L +  V +   R + E+  LG   +GH  D Y+        +
Sbjct: 948  YQVSLFEVAGEENRHLPELVREPVWSEKKRLQEEKTALGLCLTGHMFDAYRDETSHFIRQ 1007

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +      G +  +A ++ S +    ++G R+   T  +     E   +
Sbjct: 1008 PLSKVTE---GKDQLIAGIITSARMLTGQRG-RMMIATIDDGTAALEVTLY 1054


>gi|145588791|ref|YP_001155388.1| DNA polymerase III, alpha subunit [Polynucleobacter necessarius
            subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047197|gb|ABP33824.1| DNA polymerase III, alpha subunit [Polynucleobacter necessarius
            subsp. asymbioticus QLW-P1DMWA-1]
          Length = 1204

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1075 (36%), Positives = 591/1075 (54%), Gaps = 68/1075 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  SP FVHL++HS +S+ +G + +++ +     D+  A+A+TD +NLF  + F   A +
Sbjct: 1    MA-SPRFVHLRIHSEFSITDGVVRIDDAVATAVKDEMGALALTDLSNLFGLVRFYTAARS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PI G  + +    +    +           ++LLV    GY  L +L+S+  L +Q
Sbjct: 60   GGIKPIAGADVWVSNPQDPDQPH----------RLLLLVQNHSGYLNLCQLLSKASLDNQ 109

Query: 125  GKQSVRICLSWLQEIG------------TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             +    + L+W  E                GLI L+   +G +  A   +   +A+   L
Sbjct: 110  SRGRAEVDLAWFSEPAAKAEDKAAKRTMAYGLIALSAARNGEVGAALLADQEDMAKAAAL 169

Query: 173  TFKKLFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
              +KLF    Y+ +QR     D         LA   +LP+VAT+   F+   D+ AH+  
Sbjct: 170  RLEKLFPKSFYIEIQRGGHPQDEKHLQLACHLASELKLPVVATHPVQFMQRSDFIAHEAR 229

Query: 232  MAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + +A   ++    R +    + Y   + EM   F+DLP A+ N+VEIA+RC+  L +  P
Sbjct: 230  VCIAEGELLGNPRRQKKFNDEQYFLTQEEMEKRFADLPAAIANSVEIAKRCNLSLVLGQP 289

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNV 347
             LP F            ++ L  ++  GLE  + +        A++   Y  RL FE+  
Sbjct: 290  RLPDFPTPPG----ITLDDYLLQQSEVGLERHMEKNFPDPEERAKEMSRYHDRLVFEVKT 345

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I++M F GYFLIVADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERF
Sbjct: 346  ISQMGFPGYFLIVADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERF 405

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+SMPDFDIDFCQ  RD VI+YV++KYG + V+QI TFG++ A+AA+RDVGR L+ 
Sbjct: 406  LNPERVSMPDFDIDFCQHGRDRVIQYVKDKYGKDAVSQIATFGTMAARAAIRDVGRVLEQ 465

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIA-DDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
             Y+ VD + KL+PN P   ++++    ++ +  E    +  V +LL ++Q+LEG+ R+  
Sbjct: 466  GYNFVDGIAKLVPNKPGQYMTIEMAKKEEKQLAEREKNEDEVRQLLSLAQQLEGMTRNVG 525

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
             HA G++I    L+   P+Y     D      ++QF+   +E  GL+KFDFLGL TLT+L
Sbjct: 526  MHAGGVLIAPGRLTDFCPLYTQESKDQDSSSVISQFDKDDVEAIGLVKFDFLGLTTLTIL 585

Query: 583  QKSLDFLAQ---RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
              +  ++          D+  IP DD + + +L    T+ +FQLES GM+  L   +PD 
Sbjct: 586  AAAERWIKALHADRKDWDIGEIPLDDEKAFDVLKKANTVAVFQLESRGMQGMLREAKPDR 645

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
             EDIIALV+LYRPGP+D I  +  RK+G++K+    P I+P+L+ET G+++YQEQVMQ+A
Sbjct: 646  FEDIIALVALYRPGPMDLIPDFIERKHGRQKVEYPDPRIEPVLRETYGIMVYQEQVMQMA 705

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ GYSL  AD+LRRAMGKK  EEM + ++ F  GA   GIS+  A  I++L+ +FA Y
Sbjct: 706  QMIGGYSLGGADMLRRAMGKKKPEEMAQHRKIFSDGAKAGGISEAKANEIYDLMERFAGY 765

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSHAAAYA+++YQTAW+K +YP EF+AA+++L MD+ +K+K    D     I++  P
Sbjct: 766  GFNKSHAAAYALLAYQTAWLKAYYPAEFMAANLSLAMDDTDKVKILYDDCLVNQIRVFSP 825

Query: 820  SVNTPCVDFKVGD----------NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDF 868
             +NT   +F              + I Y L A++G G      I++A  AD PF  L DF
Sbjct: 826  DINTGVYEFTPLRAPDATPDSPISHIRYGLGAVRGTGEAAIESIVKAREADGPFKDLFDF 885

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCF-------GYS----RMQLLQSLDNIQKYAQWVEK 917
            C+RVD +++NRR +E+L+ AGA D         G +    R  LL SL          + 
Sbjct: 886  CARVDRRQVNRRAIEALMRAGAFDSLYRDSVPAGGNLYDIRSTLLASLAR--AIEAAEQA 943

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
              +    ++F            L +  + +   R + E+  LG   +GH  D Y+     
Sbjct: 944  EASIHQVSLFEVAGEEHRHLPELVREPIWSEKKRLQEEKASLGLCLTGHMFDAYRDETAH 1003

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +   + V    G +  +A ++ S +    ++G R+   T  +     E   +
Sbjct: 1004 FIRQPLSKLVE---GKDQLVAGIITSARMLTGQRG-RMMIATIDDGTAAVEVTLY 1054


>gi|25028585|ref|NP_738639.1| DNA polymerase III subunit alpha [Corynebacterium efficiens YS-314]
 gi|23493870|dbj|BAC18839.1| putative DNA polymerase III alpha subunit [Corynebacterium efficiens
            YS-314]
          Length = 1204

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1072 (29%), Positives = 526/1072 (49%), Gaps = 51/1072 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K  SFVHL  H+ YS+L+G   ++ + D++   Q PA+ ITD  N++ +  F +K   
Sbjct: 17   MAKQSSFVHLHNHTEYSMLDGMAKIDMLADEVNRQQMPAVGITDHGNMYGSNAFYRKMTE 76

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG++PIIG +  +  +                    +         +L   A G + L  
Sbjct: 77   AGVKPIIGIEAYLAPESRFNKERVRWGEPHQKSDDVSASGAYLHQTMLAENATGLRNLFY 136

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   EG+I  TG  SG +           A +    +
Sbjct: 137  LSSMASYEGQLGKWPRMDAEIIAER-AEGIIATTGCPSGDVQTRLRLGQFNEALEAAAMW 195

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++G D  ++ L  H    +    S+++++     LP + TN+  ++ E   +AH+ ++
Sbjct: 196  QDIYGRDNYFLELMDHGLDIENRVRSELLEIGRKLNLPPLVTNDCHYVLESQAQAHEAML 255

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAP 290
             V     +  +DR +     Y    +E +    D       +NT+ IA R     ++   
Sbjct: 256  CVQTGKTLHDEDRFKFDGSGYYIKTAEQMRSLWDDTVPDGCDNTLWIAERVQDYGEIWEE 315

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +            + L ++ +AGLE R     +      Q+Y +R ++E++VI  
Sbjct: 316  HPHDRMPVADVPEGHTPTSWLHHEVMAGLEDRFPGQQV-----PQEYIERAEYEISVIDM 370

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LLFERFLNP
Sbjct: 371  KGYPSYFLIVAEIIKHARSIGIWVGPGRGSAAGALVAYALTITNIDPIEHGLLFERFLNP 430

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468
            +R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K A++D  R    Q  
Sbjct: 431  ERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQAIKDSARVQFGQPG 490

Query: 469  YSQVDRLCK-LIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLE 519
            Y   DR+ K L P   A  +          +   +    R     DP V ++ + ++ LE
Sbjct: 491  YQIADRITKVLPPPIMAKDIPLSGITDPEHERYNEAGEVRALIETDPDVRKIYDTARGLE 550

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R A  HA  +++  +PL + +PM++       +T ++    E  GL+K DFLGL+ L
Sbjct: 551  GVVRQAGVHACAVIMSSQPLLECIPMWKRPADGAYITGWDYPACEAIGLLKMDFLGLRNL 610

Query: 580  TLLQKSLDFLAQRGVKV--DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            T++  +++ +         DL  +  +D ETY LL+   TLGIFQL+  GM++ L+ MQP
Sbjct: 611  TVIGDAIENIKANRDGKVVDLENLSIEDEETYKLLSRGETLGIFQLDGGGMQELLKRMQP 670

Query: 638  DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIY 691
                DI+A ++LYRPGP+  +    Y +RKNG++ I  IHP ++  L     ET G+I+Y
Sbjct: 671  TGFNDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEPLAEILGETYGLIVY 730

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQ+M+I+Q ++ Y+  +AD  R+AMGKK  E + K+   F +G   NG S      +++
Sbjct: 731  QEQIMKISQKVANYTAGQADGFRKAMGKKKPEVLAKEFAAFEAGMKANGFSADAIKTLWD 790

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  FA Y FNKSHAA Y ++S+ TA++K HY  E++AA +T   DN +K   +  D R 
Sbjct: 791  TILPFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDKTAIYLADCRH 850

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCS 870
              I+++ P +N   ++F      I Y L AI+ VG+     I+E       F    D+  
Sbjct: 851  LGIRVLSPDINESALNFMPVGTDIRYGLGAIRNVGSEVVDSIIETRQSKGMFRDFSDYLD 910

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            ++D+   N+R+ ESL+ AGA D  G++R  L+   ++        +K       ++FA  
Sbjct: 911  KIDTLPCNKRITESLIKAGAFDSLGHTRKGLMLVYEDAVDSVIATKKAADKGQFDLFASF 970

Query: 931  KGTFSDKI------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                 D++       +      +       E+ +LG Y SGHPLD Y+  L         
Sbjct: 971  GAEAEDEVGGFFQIAVPD-DKWDRKHELALEREMLGLYVSGHPLDGYEDALAAQIDTPLT 1029

Query: 985  ESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
              +      G  + +  ++    ++ ++K GS    VT  +      E   F
Sbjct: 1030 TIIAGELRHGAEVTVGGIISGVDRRFSKKDGSPWAIVTMEDHNGASVELLVF 1081


>gi|299770508|ref|YP_003732534.1| DNA polymerase III DnaE [Acinetobacter sp. DR1]
 gi|298700596|gb|ADI91161.1| DNA polymerase III DnaE [Acinetobacter sp. DR1]
          Length = 1187

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1039 (36%), Positives = 579/1039 (55%), Gaps = 47/1039 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + ++++    DQ PA+A+TD +NL +A++F       GI+P+
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVNAAVKDQMPALALTDLSNLHAAVKFYNACLKKGIKPL 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + +D                      LL  +  G++ L E+VSR ++  Q      
Sbjct: 63   LGSTIRLD---------------DAQHRATLLAMSDVGWKSLTEIVSRGFIEGQQLSIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E   + +I+L G     + +    ++ Q A   L  + + FG+R+Y+ L R  
Sbjct: 108  VKKEWVLEQHQD-IIVLLG-QHSDVGQMLCSSNPQKAAPLLEAWLEKFGNRVYLALTRTD 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     +  +LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   RPR  
Sbjct: 166  RPGEEDFIQEAAKLAAQYNVGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADNRRPRIY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ + K   EM+ +FSD+P A+ENT  IA+RC+  LQ+    LP +   +   I    +
Sbjct: 226  SPEQHFKTSDEMIELFSDIPSAIENTYHIAKRCNVKLQLGTYFLPDYPIPDGFTI----D 281

Query: 309  NELRNKAVAGLEV------RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE        + +         + Y +R+D+E+ +I +M F GYFLIV D
Sbjct: 282  TYFEHLSKVGLEERLNYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ K++P  
Sbjct: 402  CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537
            P       AI  + + ++      + D      + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGVDLATAIDMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGVTRNTGKHAGGVVIAPG 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596
             ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +      
Sbjct: 522  KITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSND 581

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              ++  +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  QLNILHVPLDDAKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +   +        +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L  AD+LR
Sbjct: 642  MDLIPDFI-HRMHGGDFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ F+ GA++ GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRQIFLEGAAEKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDN 833
             TAW+K HYP EF+AA MT EM N + +     D R  N++++PPSVN     F    D 
Sbjct: 761  HTAWLKAHYPAEFMAAVMTSEMQNTDSVVFLIDDCRNNNLEVLPPSVNMSTYHFHASNDK 820

Query: 834  RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L AIKGVG    + ++++     P+  L DFC R+D KK+N+R LE+L+ AGALD
Sbjct: 821  TIVYGLGAIKGVGEQAMQSVIDSRRQFGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A+    NR +   ++F   +     +   +     +  VR 
Sbjct: 881  CLGIERASLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+          
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRQELKAFIPVKLNEITATRRGVTTVYAGLVIDVANFP---- 994

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
            +R+  V   +     E + 
Sbjct: 995  NRVVIV-LDDGTARIEVSC 1012


>gi|260753893|ref|YP_003226786.1| DNA polymerase III subunit alpha [Zymomonas mobilis subsp. mobilis
            NCIMB 11163]
 gi|258553256|gb|ACV76202.1| DNA polymerase III, alpha subunit [Zymomonas mobilis subsp. mobilis
            NCIMB 11163]
          Length = 1174

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/1047 (43%), Positives = 639/1047 (61%), Gaps = 32/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P FV L++ S +++LEGA+   +I         PA  I D N L+  + FS     
Sbjct: 1    MPYTP-FVPLRIFSGFTMLEGAIEPKDITQHAKKMGFPAAGICDRNGLYGVMTFSDSGKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPIIG  L +         +  +     +P   L     +GY  L  LVS  +L   
Sbjct: 60   DGVQPIIGSLLAVARPLRGGEASGQELKIDWLP---LYAQDEDGYNNLCALVSHAHLGRP 116

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    + + +L++  ++GL+ LTGG  G + R         AE  L   +K+F DRLY+
Sbjct: 117  LELPPHVSMEFLEQ-HSQGLLALTGGKEGALARLLAEEQQSEAEAYLTLLQKIFPDRLYI 175

Query: 185  NLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R          + ++ LAY  ++PLVATN   FL  + + AHD ++ +A S  V   
Sbjct: 176  ELSRRSEEIEEAAEEGLIDLAYDRDIPLVATNPVCFLEADFHPAHDAMLCIADSAYVDSP 235

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR   +P+ ++K+  EM  +F D+PEA++N++ IA+RC+    V      + I       
Sbjct: 236  DRRHSSPEAWMKSGEEMARLFEDIPEAIQNSLVIAQRCAVAAPV-----RKPILPSLAGD 290

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++ E   LR  A AGLE RLA          + Y +RL +ELN+I  M F GYFLIVADF
Sbjct: 291  REGETLMLRKDAWAGLEARLAAMTTP--VDRKAYEERLQYELNIIENMGFPGYFLIVADF 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N IPVGPGRGSGAGSV A+ALTIT++DPLR  LLFERFLNP+R+SMPDFDIDFC
Sbjct: 349  IKWAKSNQIPVGPGRGSGAGSVVAWALTITNLDPLRLGLLFERFLNPERVSMPDFDIDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            + RR EVI YVQ+KYG + VAQIITFG ++A+A L+D GR LQM Y QVDRL KL+P+  
Sbjct: 409  ETRRSEVISYVQHKYGLDHVAQIITFGRMKARAVLKDTGRVLQMSYGQVDRLAKLVPSQA 468

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            + P +  +A+        A   +  V RLL+++ KLEGL RH+STHAAG+VIGDRPL QL
Sbjct: 469  SDPWTLDRALNGVPEIASAYENEEDVHRLLDLAMKLEGLPRHSSTHAAGVVIGDRPLHQL 528

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD RSD PVTQF+MK++EK GL+KFDFLGLKTL++L K++  L  RGV+VDL  IP
Sbjct: 529  VPLYRDPRSDFPVTQFDMKYVEKTGLVKFDFLGLKTLSVLNKAVQMLKARGVEVDLDHIP 588

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD   + LL    T+G+FQLES GMR+ L  ++P   EDIIALV+LYRPGP+DNI  + 
Sbjct: 589  LDDEAVFELLKQGDTVGVFQLESEGMRRTLAAVKPTRFEDIIALVALYRPGPMDNIPSFG 648

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RKNG E+IV  HPL++P+LKET G+I+YQEQVMQ AQ+L+GYSL EAD+LRRAMGKKI+
Sbjct: 649  ARKNGGEEIVYPHPLLEPVLKETYGIIVYQEQVMQAAQVLAGYSLGEADLLRRAMGKKIQ 708

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EMD Q+ RF+ G+ K+ I++  A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K H
Sbjct: 709  SEMDAQRSRFVEGSKKHDITENQANQLFDLIDKFAGYGFNKSHAAAYALVAYQTAWLKAH 768

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            Y  EF AA+M  +M   +K++ F  D R+  ++ +PP +N    DF V D  + Y+L A+
Sbjct: 769  YRAEFYAAAMCFDMALTDKLQVFVDDMRRSGLRYLPPDINRSQSDFTVEDGCVRYALGAL 828

Query: 843  KGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KGVG      I +    +  F SL+DF +R++ + LNRR LESL  AGA D  G  R  +
Sbjct: 829  KGVGEKAMDDICQEREKNGAFKSLDDFANRINPEHLNRRQLESLASAGAFDSLGVDRCAV 888

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             QS + I   A  + + R +    +F  E+      I L +  + + + R   E+   GF
Sbjct: 889  KQSSEMIIGTAANIHRMRKSGQGGLFGMEEMAM-PSIKLPEDKIWSLTERMNAEKEAFGF 947

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATI--------------RGNNI--RLAAMVVSKQ 1005
            +FS HP+D Y+ +L  + I+   +                   R   I  ++AAM+   +
Sbjct: 948  FFSSHPIDNYRSLLSGLRIRSRADINRLAPPSYPQDDENPQDYRKKRIATQMAAMIEDVR 1007

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + + +G R   V  S+ + ++ A+ F
Sbjct: 1008 WRDSARGRRYMMVAASDASGQFFASCF 1034


>gi|59800539|ref|YP_207251.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae FA
            1090]
 gi|240013392|ref|ZP_04720305.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            DGI18]
 gi|240120463|ref|ZP_04733425.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            PID24-1]
 gi|59717434|gb|AAW88839.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae FA
            1090]
          Length = 1144

 Score =  688 bits (1774), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1038 (37%), Positives = 584/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+P+    + I                      +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPVGAADVWI----------GNPNAPDKPFRAMLVIRNDAGYLRLSELLTEAYVGQD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDTFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F++ +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A    +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSLDDCLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV+ KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L K
Sbjct: 406  FDVDFCQANRGRVIEYVREKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465

Query: 478  LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S   A+    + +E   A+ + + +  +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLSLDDAMKAQPQIQELLEAEEADELI-TLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +    G  
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTAGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  VDVGKIPLDDQTAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNR 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    D +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPDMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++              +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDSSGQAEIMV 1014


>gi|240079974|ref|ZP_04724517.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            FA19]
 gi|268596113|ref|ZP_06130280.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
 gi|268549901|gb|EEZ44920.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
          Length = 1144

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1038 (37%), Positives = 584/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+P+    + I                      +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPVGAADVWI----------GNPNAPDKPFRAMLVIRNDAGYLRLSELLTEAYVGQD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDTFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F++ +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A    +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSLDDCLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV+ KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L K
Sbjct: 406  FDVDFCQANRGRVIEYVREKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465

Query: 478  LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S   A+    + +E   A+ + + +  +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLSLDDAMKAQPQIQELLEAEEADELI-TLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +    G  
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTAGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  VDVGKIPLDDQTAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++              +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDSSGQAEIMV 1014


>gi|194097697|ref|YP_002000738.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            NCCP11945]
 gi|239998209|ref|ZP_04718133.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            35/02]
 gi|240015834|ref|ZP_04722374.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            FA6140]
 gi|240112181|ref|ZP_04726671.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            MS11]
 gi|240114926|ref|ZP_04728988.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            PID18]
 gi|240117214|ref|ZP_04731276.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            PID1]
 gi|240122764|ref|ZP_04735720.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            PID332]
 gi|240124957|ref|ZP_04737843.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            SK-92-679]
 gi|240127469|ref|ZP_04740130.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            SK-93-1035]
 gi|254492986|ref|ZP_05106157.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae 1291]
 gi|260441259|ref|ZP_05795075.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            DGI2]
 gi|268594063|ref|ZP_06128230.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268598240|ref|ZP_06132407.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae MS11]
 gi|268600585|ref|ZP_06134752.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID18]
 gi|268602902|ref|ZP_06137069.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID1]
 gi|268681369|ref|ZP_06148231.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID332]
 gi|268683537|ref|ZP_06150399.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae SK-92-679]
 gi|268685843|ref|ZP_06152705.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae SK-93-1035]
 gi|291044605|ref|ZP_06570314.1| DNA polymerase III [Neisseria gonorrhoeae DGI2]
 gi|293397724|ref|ZP_06641930.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae F62]
 gi|193932987|gb|ACF28811.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            NCCP11945]
 gi|226512026|gb|EEH61371.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae 1291]
 gi|268547452|gb|EEZ42870.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
 gi|268582371|gb|EEZ47047.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae MS11]
 gi|268584716|gb|EEZ49392.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID18]
 gi|268587033|gb|EEZ51709.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID1]
 gi|268621653|gb|EEZ54053.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae PID332]
 gi|268623821|gb|EEZ56221.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae SK-92-679]
 gi|268626127|gb|EEZ58527.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae SK-93-1035]
 gi|291011499|gb|EFE03495.1| DNA polymerase III [Neisseria gonorrhoeae DGI2]
 gi|291611670|gb|EFF40739.1| DNA polymerase III subunit alpha [Neisseria gonorrhoeae F62]
 gi|317163496|gb|ADV07037.1| putative DNA polymerase III, alpha subunit [Neisseria gonorrhoeae
            TCDC-NG08107]
          Length = 1144

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/1038 (37%), Positives = 584/1038 (56%), Gaps = 35/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    
Sbjct: 1    MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
            AGI+P+    + I                      +L++    GY RL EL++  Y+  D
Sbjct: 60   AGIKPVGAADVWI----------GNPNAPDKPFRAMLVIRNDAGYLRLSELLTEAYVGQD 109

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110  RNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDTFY 169

Query: 184  VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            + LQR   R       S  V+LA    LP+VAT+ + F++ +D+ AH+  + +A   V++
Sbjct: 170  LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMNRDDFNAHEARVCIAGGWVLT 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             K RPR  TP  +      M+  F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230  DKKRPRDFTPSQFFIPPETMLERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357
                   ++ L   +  GL+ R+ Q    +   A    +Y++RLDFELN+I +MKF GYF
Sbjct: 290  ----LSLDDCLIKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346  LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FD+DFCQ  R  VI YV+ KYG + V+QI+TFG++ +KA +RDVGR L++P+   D+L K
Sbjct: 406  FDVDFCQANRGRVIEYVREKYGAQAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465

Query: 478  LIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP +   P+S   A+    + +E   A+ + + +  +++KLE L R    HA G++I  
Sbjct: 466  LIPLEANKPLSLDDAMKAQPQIQELLEAEEADELI-TLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVK 595
              +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +    G  
Sbjct: 525  GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTAGDI 584

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585  VDVGKIPLDDQTAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645  DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704  AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834
            TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +
Sbjct: 764  TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823

Query: 835  IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            I Y+L AIKG G      I+ A      F  L DFC RV  + +NRR LE+L+  GA D 
Sbjct: 824  IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R  LL ++D     A   +K        +F   +      + L    + + S +  
Sbjct: 884  IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFDMMEDAIEP-VRLIDAPMWSESEKLA 940

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E+ V+GFY SGHP   Y   +R++              +++RLA  V + +    ++G 
Sbjct: 941  EEKTVIGFYLSGHPFGPYAQEVRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK 997

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             I +V+  + + + E   
Sbjct: 998  -IAFVSLEDSSGQAEIMV 1014


>gi|190573488|ref|YP_001971333.1| DNA polymerase III subunit alpha [Stenotrophomonas maltophilia K279a]
 gi|190011410|emb|CAQ45028.1| putative DNA polymerase III, alpha chain [Stenotrophomonas
            maltophilia K279a]
          Length = 1196

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/1082 (37%), Positives = 602/1082 (55%), Gaps = 77/1082 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTN 50
            +  S  FVHL VH+ +SL +  + +                +L +      PA+A+TD N
Sbjct: 1    MSNS-RFVHLHVHTEFSLADSTIRVPAKPDQADPKKAKQANLLSRSVELGLPALAVTDLN 59

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            NLF+ ++F + A   GI+PI G  + I  +                  + LL    EGY 
Sbjct: 60   NLFALVKFYKAAEGVGIKPIAGADVLIAEEG------------QDPWRMTLLCRDREGYL 107

Query: 111  RLIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
             L  L++R ++     +  V I   WL + G   L  L  G      R       ++AE+
Sbjct: 108  SLSRLLTRAWMEGHRPEGGVAIHPDWL-KAGNANLFAL-AGRQSLAGRLALDGKHELAEQ 165

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAY-THELPLVATNNSLFLSEEDYEAH 228
            +L  ++++FGD L++ L R         +Q   +A     LP+VA+N+  FL+  D+ AH
Sbjct: 166  QLADWQRVFGDGLHLELTRTGREGEETFNQFALMAAGQRGLPVVASNDVRFLAPTDFSAH 225

Query: 229  DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            +  + ++   V+    RPR  +   YLK+  EM ++F+D+P+A++NT+ +A RC+  +++
Sbjct: 226  EARVCISTGRVLDDPKRPREYSDQQYLKSAEEMCALFADIPDAIDNTLALAERCNIEMRL 285

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                LP +   +     +  +  ++  +  GLE RL +  +A G   +DY +RL+FELN 
Sbjct: 286  GTYFLPNYPVPD----DETLDTWIQKMSRDGLEERLEKNPLAPGKTREDYFERLEFELNT 341

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I +M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERF
Sbjct: 342  IIKMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALKITDLDPLPYNLLFERF 401

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L  
Sbjct: 402  LNPERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDSGRVLGF 461

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIA---------DDSRFREARLADPSVDRLLEISQKL 518
            PY  VD + KLIPN     +                     +    +  V  L++++ +L
Sbjct: 462  PYGLVDGVSKLIPNILGIHLKDALGKGKEGPSSEMASPELIQRYETEDDVRDLIDLALQL 521

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFL 574
            E L R+A  HA G+VIG  PLS+  P+Y +   +     PVTQF+   +E+ GL+KFDFL
Sbjct: 522  EDLTRNAGKHAGGVVIGPEPLSEFCPLYAEHDENGLGKNPVTQFDKNDVEEVGLVKFDFL 581

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSL-----IPFDDHETY-HLLTTKGTLGIFQLESSGM 628
            GL+TLT++  ++  + +R  +  +       IP DD  TY  +     T  +FQ ESSGM
Sbjct: 582  GLRTLTIIDWAVKAINKRHERAGIPPVDIAAIPLDDTPTYKDIFANGNTGAVFQFESSGM 641

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            R+ L+  +PD  ED+IALVSLYRPGP+D I  +N RK+G+E+I+   P  + +LK+T G+
Sbjct: 642  RRLLKDARPDRFEDLIALVSLYRPGPMDLIPSFNARKHGQEEIIYPDPRTEAILKDTYGI 701

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++YQEQVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K+G+ +  A  
Sbjct: 702  MVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKDGVDEAKADA 761

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            IF+L+ KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ ++DN +K+  F  +
Sbjct: 762  IFDLMEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDLDNTDKVVGFLDE 821

Query: 809  ARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLE 866
             R   + ++PP VN     F+ V  + I Y L AIKGVG      ++E      PF  L 
Sbjct: 822  VRNLGLTVLPPKVNQSAFMFEAVTPDTIQYGLGAIKGVGQGACEAVVEERLKGGPFKDLL 881

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DFC+RV S KLNRR LE+++  GALD  G +R  L+  L  + K    + + R +   ++
Sbjct: 882  DFCTRVGSAKLNRRTLEAMINCGALDELGRNRASLMLQLPEVIKATDQMARERASGQNSL 941

Query: 927  FAH-EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM------- 978
            F   +    + ++ L +        R   E+  LGFY SGHP D ++  +R +       
Sbjct: 942  FGGPDPSATTIQLDLPEAEEWPLLQRLNGERDTLGFYLSGHPFDPWRDDVRDLVGNDLGS 1001

Query: 979  --GIKGYEESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
               I                      LA  VV  ++    KG    ++   +     E +
Sbjct: 1002 VEKIWSANSGGGGGGEKRWRPEVQTVLAGQVVGVRR----KGESQIFIQLEDGRGRVECS 1057

Query: 1031 FF 1032
             F
Sbjct: 1058 AF 1059


>gi|259507641|ref|ZP_05750541.1| DNA polymerase III, alpha subunit [Corynebacterium efficiens YS-314]
 gi|259164820|gb|EEW49374.1| DNA polymerase III, alpha subunit [Corynebacterium efficiens YS-314]
          Length = 1188

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/1072 (29%), Positives = 526/1072 (49%), Gaps = 51/1072 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K  SFVHL  H+ YS+L+G   ++ + D++   Q PA+ ITD  N++ +  F +K   
Sbjct: 1    MAKQSSFVHLHNHTEYSMLDGMAKIDMLADEVNRQQMPAVGITDHGNMYGSNAFYRKMTE 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG++PIIG +  +  +                    +         +L   A G + L  
Sbjct: 61   AGVKPIIGIEAYLAPESRFNKERVRWGEPHQKSDDVSASGAYLHQTMLAENATGLRNLFY 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   EG+I  TG  SG +           A +    +
Sbjct: 121  LSSMASYEGQLGKWPRMDAEIIAER-AEGIIATTGCPSGDVQTRLRLGQFNEALEAAAMW 179

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++G D  ++ L  H    +    S+++++     LP + TN+  ++ E   +AH+ ++
Sbjct: 180  QDIYGRDNYFLELMDHGLDIENRVRSELLEIGRKLNLPPLVTNDCHYVLESQAQAHEAML 239

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAP 290
             V     +  +DR +     Y    +E +    D       +NT+ IA R     ++   
Sbjct: 240  CVQTGKTLHDEDRFKFDGSGYYIKTAEQMRSLWDDTVPDGCDNTLWIAERVQDYGEIWEE 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +            + L ++ +AGLE R     +      Q+Y +R ++E++VI  
Sbjct: 300  HPHDRMPVADVPEGHTPTSWLHHEVMAGLEDRFPGQQV-----PQEYIERAEYEISVIDM 354

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LLFERFLNP
Sbjct: 355  KGYPSYFLIVAEIIKHARSIGIWVGPGRGSAAGALVAYALTITNIDPIEHGLLFERFLNP 414

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468
            +R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K A++D  R    Q  
Sbjct: 415  ERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQAIKDSARVQFGQPG 474

Query: 469  YSQVDRLCK-LIPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLE 519
            Y   DR+ K L P   A  +          +   +    R     DP V ++ + ++ LE
Sbjct: 475  YQIADRITKVLPPPIMAKDIPLSGITDPEHERYNEAGEVRALIETDPDVRKIYDTARGLE 534

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R A  HA  +++  +PL + +PM++       +T ++    E  GL+K DFLGL+ L
Sbjct: 535  GVVRQAGVHACAVIMSSQPLLECIPMWKRPADGAYITGWDYPACEAIGLLKMDFLGLRNL 594

Query: 580  TLLQKSLDFLAQRGVKV--DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            T++  +++ +         DL  +  +D ETY LL+   TLGIFQL+  GM++ L+ MQP
Sbjct: 595  TVIGDAIENIKANRDGKVVDLENLSIEDEETYKLLSRGETLGIFQLDGGGMQELLKRMQP 654

Query: 638  DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIY 691
                DI+A ++LYRPGP+  +    Y +RKNG++ I  IHP ++  L     ET G+I+Y
Sbjct: 655  TGFNDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEPLAEILGETYGLIVY 714

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQ+M+I+Q ++ Y+  +AD  R+AMGKK  E + K+   F +G   NG S      +++
Sbjct: 715  QEQIMKISQKVANYTAGQADGFRKAMGKKKPEVLAKEFAAFEAGMKANGFSADAIKTLWD 774

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  FA Y FNKSHAA Y ++S+ TA++K HY  E++AA +T   DN +K   +  D R 
Sbjct: 775  TILPFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDKTAIYLADCRH 834

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCS 870
              I+++ P +N   ++F      I Y L AI+ VG+     I+E       F    D+  
Sbjct: 835  LGIRVLSPDINESALNFMPVGTDIRYGLGAIRNVGSEVVDSIIETRQSKGMFRDFSDYLD 894

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            ++D+   N+R+ ESL+ AGA D  G++R  L+   ++        +K       ++FA  
Sbjct: 895  KIDTLPCNKRITESLIKAGAFDSLGHTRKGLMLVYEDAVDSVIATKKAADKGQFDLFASF 954

Query: 931  KGTFSDKI------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                 D++       +      +       E+ +LG Y SGHPLD Y+  L         
Sbjct: 955  GAEAEDEVGGFFQIAVPD-DKWDRKHELALEREMLGLYVSGHPLDGYEDALAAQIDTPLT 1013

Query: 985  ESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
              +      G  + +  ++    ++ ++K GS    VT  +      E   F
Sbjct: 1014 TIIAGELRHGAEVTVGGIISGVDRRFSKKDGSPWAIVTMEDHNGASVELLVF 1065


>gi|325121909|gb|ADY81432.1| DNA polymerase III, alpha chain [Acinetobacter calcoaceticus PHEA-2]
          Length = 1187

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1039 (36%), Positives = 583/1039 (56%), Gaps = 47/1039 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + ++++    DQ PA+A+TD +NL +A++F       GI+P+
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVNAAVKDQMPALALTDLSNLHAAVKFYNSCLKKGIKPL 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + +D                      LL  +  G++ L E+VSR ++  Q      
Sbjct: 63   LGSTIRLD---------------DAQHRATLLAMSNVGWKSLTEIVSRGFIEGQQLSIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E   + +I+L G     + +    ++ Q A   L  + + FG+R+Y+ L R  
Sbjct: 108  VKKEWVLEQHQD-IIVLLG-QHSDVGQMLCSSNPQKAAPLLEAWIEKFGNRVYLALTRTD 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     +  +LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   RPR  
Sbjct: 166  RPGEEDFIQEAAKLAAQYNVGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADDRRPRLY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ + K   EM+ +FSD+P A+ENT  IA+RC+  LQ+    LP +   +   I    +
Sbjct: 226  SPEQHFKTSDEMIELFSDIPSAIENTYNIAKRCNVSLQLGTYFLPDYPIPDGFTI----D 281

Query: 309  NELRNKAVAGLEV------RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE        + + +       + Y +R+D+E+ +I +M F GYFLIV D
Sbjct: 282  TYFEHLSKVGLEERLDYLYPVEKRSEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ K++P  
Sbjct: 402  CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537
            P       AI  + + ++      + D      + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGVDLATAIEMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPG 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +     D
Sbjct: 522  KITDFSAVLCDEDGTSRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSND 581

Query: 598  ---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               +S +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  PLIISHVPLDDAKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +   +        +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L  AD+LR
Sbjct: 642  MDLIPDFI-HRMHGGDFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ F++GA++ GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRQIFLAGAAEKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TAW+K HYP EF+AA M+ EM N + +     D R   ++++PPSVN     F   D++
Sbjct: 761  HTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYHFHASDDK 820

Query: 835  -IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L AIKGVG    + ++++     P+  L DFC R+D KK+N+R LE+L+ AGALD
Sbjct: 821  TIVYGLGAIKGVGEQAMQSVIDSRRQFGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A+    NR +   ++F   +     +   +     +  VR 
Sbjct: 881  CLGIERASLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+          
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRQELKAFIPVKLNEITATRRGVTTVYAGLVIDVANFP---- 994

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
            +R+  V   +     E + 
Sbjct: 995  NRVVIV-LDDGTARIEVSC 1012


>gi|227504715|ref|ZP_03934764.1| DNA polymerase III subunit alpha [Corynebacterium striatum ATCC 6940]
 gi|227198725|gb|EEI78773.1| DNA polymerase III subunit alpha [Corynebacterium striatum ATCC 6940]
          Length = 1190

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/1073 (27%), Positives = 515/1073 (47%), Gaps = 51/1073 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+ SFVHL  H+ +S+L+G   ++ + D++   + PA+ +TD  N++ +  F +K  +
Sbjct: 1    MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVVRQEMPAVGMTDHGNMYGSNAFYKKMTS 60

Query: 65   AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG++PIIG +  +  +                    +         +L   A G + L +
Sbjct: 61   AGVKPIIGIEAYMAPESRFNKKRVLWGTPDQKRDDVSASGAYLHQTMLAENATGLKNLFK 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   EG+I  TG  SG +           A +    +
Sbjct: 121  LSSLASYEGQLGKWPRMDAELIAE-HAEGIIATTGCPSGDVQTRLRLGQFDEALEAAAMW 179

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++G D  ++ L  H    ++     ++++    +LP + TN+  ++ E    +H+ ++
Sbjct: 180  QDIYGKDNFFLELMDHGLDIEKRTRDGLLEIGRKLDLPPLVTNDCHYVLESQAPSHEAML 239

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAP 290
             V         DR +     Y    +  +    D       +NT+ IA R     ++   
Sbjct: 240  CVQTGKTFMDPDRFKFDGTGYYIKSAAQMREIWDDMIPDGCDNTLWIAERVQDYGEIWEE 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +            + L ++ + GL     Q         ++Y +R ++E++VI  
Sbjct: 300  HTHDRMPIADVPEGHTPTSWLTHEVMEGL-----QDRFPGKEVPEEYVKRAEYEISVIDM 354

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LLFERFLNP
Sbjct: 355  KGYPSYFLIVAELIKHARSVGIRVGPGRGSAAGALVAYALTITNIDPIEHDLLFERFLNP 414

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R S PD DIDF   RR E+I+Y  +++G ++VAQ+ITFG+++ K A++D  +       
Sbjct: 415  ERPSAPDIDIDFDDRRRGEMIQYAADRWGEDKVAQVITFGTVKTKQAIKDSAKVHFGQPG 474

Query: 471  QVDR-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                           + K IP         +  ++ +  R+    DP V ++ E ++ LE
Sbjct: 475  FQMADRINGALPPAIMAKDIPLAGIMDPEHERYSEATEVRQMIETDPDVKKIYETARGLE 534

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R A  HA  +++    L   +PM++       +T ++    E  GL+K DFLGL+ L
Sbjct: 535  GVVRQAGVHACAVIMASVRLMDHIPMWQRPADGAYITGWDYPACEAIGLLKMDFLGLRNL 594

Query: 580  TLLQKSLDFLAQRG----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            T++   L+ + +         ++     +  + Y LL+   TLG+FQL+S GM++ L+ M
Sbjct: 595  TVIGDCLENIKKNRGEEIHLEEIHADDPNVSKVYELLSRGETLGVFQLDSGGMQELLKRM 654

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVI 689
            +P   +DI+A ++LYRPGP+  +    Y +RKNG+++I  IHP ++      L ET G+I
Sbjct: 655  KPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLREILDETYGLI 714

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + +Q ++F  G  +NG SK     +
Sbjct: 715  VYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMQENGYSKDAMDAL 774

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +  +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K   +  D 
Sbjct: 775  WGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKSAIYLSDC 834

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDF 868
            R   I ++ P VN    +F+     I + + AI+ VG+     I++   +   + S  D+
Sbjct: 835  RHLGIHVLSPDVNESVENFQAVGEDIRFGMGAIRNVGSEVVESIVKTRKEKGAYTSFSDY 894

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              +++     +RV ESL+ AGA D   + R  L+   ++     Q  +K       ++FA
Sbjct: 895  LDKIELTACTKRVTESLIKAGAFDSMEHPRKGLMLIHEDAVDAVQTTKKAADKGQFDLFA 954

Query: 929  HEKGTFSDKIT---LEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
               G    ++             +       E+ +LG Y SGHPLD ++  L        
Sbjct: 955  GFGGEEQAEVASAFAIDIPDENWDRKHELALEREMLGLYVSGHPLDGFEEALEAQTDTPL 1014

Query: 984  EESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
             + +      G  + +  ++    ++ +++ GS    V   +    + +   F
Sbjct: 1015 PKILSGEVYNGQELVIGGIISGVDRRFSKRDGSPWAIVNMEDHNGAQVDILVF 1067


>gi|294501515|ref|YP_003565215.1| DNA polymerase III subunit alpha [Bacillus megaterium QM B1551]
 gi|294351452|gb|ADE71781.1| DNA polymerase III, alpha subunit [Bacillus megaterium QM B1551]
          Length = 1118

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1011 (36%), Positives = 579/1011 (57%), Gaps = 39/1011 (3%)

Query: 27   LSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMT 86
            + ++ +++        AIA+TD N ++  + F +    AGI+PIIG  L I   +  +  
Sbjct: 19   VRIHELVETAKKMNYEAIALTDENVMYGVIPFYKACVKAGIKPIIGLTLSILEHEESER- 77

Query: 87   NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM 146
                        +VLL    +GY+ L++L S +   ++      +   WL    + GLI 
Sbjct: 78   ---------AYPLVLLAENDKGYENLLKLSSLVQTKEKHG----VNKKWLHHY-SGGLIA 123

Query: 147  LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYT 206
            +T G +G I+     N  Q A++ L  FKK++   LY+++QRH   + +   Q+ +LA  
Sbjct: 124  ITPGVTGEIETLLAENKLQDAKQVLQFFKKVYSQSLYISIQRHGQDEAFINQQLTELAAE 183

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS---QKDRPRVTPDHYLKNRSEMVSI 263
              +PLVATN   +L +ED +A++ L A+     +     ++    + ++Y K+  EM  +
Sbjct: 184  ENIPLVATNQVKYLKKEDRDAYECLAAIRDGEKLHSDEDEEVKSKSSEYYFKSPDEMEDL 243

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            F D    +E +++IARRC   + +    +P++               LR     GL+   
Sbjct: 244  FHDQHFLIEESIKIARRCELEISLGVMSIPKYPVP----PSVTSSAYLRTLCEKGLQE-- 297

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                       + Y +RLD+ELN+I  M+FS YFLIV DF+ +A ++ I  GPGRGS AG
Sbjct: 298  -----RFQVITEQYEERLDYELNIIENMRFSDYFLIVWDFMNYAHEHGILTGPGRGSAAG 352

Query: 384  SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
            S+ +YAL IT++DP++  LLFERFLNP+R+SMPD DIDF  ++RD+VI+YV  KYG   V
Sbjct: 353  SLVSYALRITNVDPIQHQLLFERFLNPERISMPDIDIDFPDNKRDQVIQYVTQKYGALHV 412

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
            AQIITFG+L AKAA+RDVGR +      ++++ K IP  P   +    + D    ++   
Sbjct: 413  AQIITFGTLAAKAAVRDVGRVMGFDQEALNKMSKAIPTKPGTTLKSA-LRDSRVLQDYLS 471

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWI 563
             + +  +   I+ K+EGL RH STHAAG+VI ++PL+Q V +  +   D+ +TQ+ M+ +
Sbjct: 472  ENEARKQWYNIAMKIEGLPRHTSTHAAGVVISEKPLTQSVAVQ-EGHDDVYLTQYPMEAL 530

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQ 622
            +  GL+K DFLGL+ LT+L   L  + +   +   LS IPF+D +T+ LL+   T GIFQ
Sbjct: 531  QDVGLLKMDFLGLRNLTILDHILKKIERDMNRKLSLSHIPFNDQKTFELLSKGDTTGIFQ 590

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
            LES GMR+ L+ ++P  +EDI+A+ +LYRPGP++NI  Y  RK+G EK++  HP +  +L
Sbjct: 591  LESDGMRRVLQQLKPTELEDIVAVNALYRPGPMENIPTYIKRKHGVEKVIYDHPTLKDIL 650

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
            + T GVI+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK +  +D+++  FI G+ K G  
Sbjct: 651  QSTHGVIVYQEQIMQIASKMAGFSLGEADLLRRAVSKKERAVLDRERAHFIQGSKKKGYD 710

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
             ++A  +++L+ +FADYGFN+SHA AY++++YQ A++K HYP++F +A +T  + N  KI
Sbjct: 711  LSVANRVYDLIVRFADYGFNRSHAVAYSMVAYQLAYLKAHYPLQFFSALLTSVIGNEGKI 770

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
             ++  + ++  IQ++PPS+N     F V    I YSLAAIK +G    + I E    K F
Sbjct: 771  AQYINELKRKKIQVLPPSINKSMYSFNVEGESIRYSLAAIKHIGAAAMQEITEERKKKRF 830

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
            + L DFC+RV  K +N++ LE+L+ +G  D FG +R  LL ++D   ++A  V  +    
Sbjct: 831  EDLFDFCARVSQKAVNKKALEALILSGGFDEFGENRATLLATIDVAFEHASLVLPDDDFG 890

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
                F  E   FS K    +        R + E+ +LGFY S HP   Y+ +     +  
Sbjct: 891  ----FGAE---FSLKPKYMEKEELKIEDRLQYEKDMLGFYLSSHPASQYEALNSFYSVVS 943

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +      G  + L   V+  +  +T+KG ++ ++  ++ + E E   FP
Sbjct: 944  LHDMKEYASGKAVSLLVFVLEIRVIRTKKGEQMAFLRITDESGEGEVVAFP 994


>gi|296283776|ref|ZP_06861774.1| DNA polymerase III, alpha subunit [Citromicrobium bathyomarinum
            JL354]
          Length = 1155

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 455/1041 (43%), Positives = 634/1041 (60%), Gaps = 33/1041 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P FV L+V S++S+LEGA+    I         PAIA+ D N L+ ++ F+Q    
Sbjct: 1    MAFAP-FVPLRVLSAFSMLEGAIEPKAIAKLATERGFPAIAMCDRNGLYGSVPFAQACIE 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPI+G  L +   D              +  + L V    G+  L  LVS  +L   
Sbjct: 60   NGVQPIVGALLGVARPD-----------SDQIDHLPLYVQDDAGWLNLCRLVSAAHLERP 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +Q   + L+ L+   T+GLI LTG S G + R         A + L   + LF  RLY+
Sbjct: 109  LEQVPHVPLAALEGY-TDGLIALTGASEGAVTRLLAQGQGVHAARYLDRLEALFPQRLYI 167

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     +   E  ++ LAY  +LPLVATN + F     Y+AHD ++ +A+S  + ++
Sbjct: 168  ELARRGEPTEVAAEEALLDLAYARDLPLVATNPANFAEPHFYKAHDAMLCIANSRKLWEE 227

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DRPR     Y+K+   M  +F+DLPEAL NT+ IA+RC+F     API            
Sbjct: 228  DRPRSAKAAYVKSAPMMQELFADLPEALANTLTIAQRCAFAPPQRAPI-----LPSLAGD 282

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             + E   L   A  GL+ RLA          Q Y +RLD+E+ +I  M F GYFLIVADF
Sbjct: 283  LEGEAKMLAEDARRGLDARLAIYEDLSDEERQTYYERLDYEVGIIHNMGFPGYFLIVADF 342

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK +NIPVGPGRGSGAGS+ A++LTITD+DP+R  LLFERFLNP+R+SMPDFDIDFC
Sbjct: 343  IKWAKDHNIPVGPGRGSGAGSLVAWSLTITDLDPIRLGLLFERFLNPERVSMPDFDIDFC 402

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            + RR EVIRYVQ KYG ++VAQIITFG ++A+A LRD GR L M Y QVDRLCK++PN P
Sbjct: 403  ETRRGEVIRYVQEKYGADKVAQIITFGKMKARAVLRDCGRILDMSYGQVDRLCKMVPNHP 462

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              P S  +A+   + F+     D  V  L++++ +LEGL R++STHAAG+VIGDRPL++L
Sbjct: 463  TDPWSLPRALNGAAEFKGEYDNDNEVRTLVDLAMQLEGLPRNSSTHAAGVVIGDRPLAEL 522

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD RSD+PVTQF+MK +E AGL+KFDFLGLKTL++LQK++D L +RG++ DL  + 
Sbjct: 523  VPLYRDPRSDMPVTQFDMKVVEGAGLVKFDFLGLKTLSVLQKAVDLLKRRGIECDLGTVS 582

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +DD   Y L+    T+G+FQLES GMR+ L  ++P   EDIIALVSLYRPGP+DNI ++ 
Sbjct: 583  WDDKAVYDLMQRGDTVGVFQLESEGMRRTLTAVKPTKFEDIIALVSLYRPGPMDNIPLFG 642

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G E I   H  ++ +LKET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKK +
Sbjct: 643  KRKAGVEPIEYPHAKLEGILKETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKNQ 702

Query: 723  EEMDKQKERFISGASKNGISKTIA-VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             EMDKQ++RFI G  K    +      +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K 
Sbjct: 703  AEMDKQRQRFIDGCKKVSDIEANEASALFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKA 762

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----DNRIYY 837
            HYP EF AA+M  +MD  EK+  F  DAR+  I++  P +N    +F V        + Y
Sbjct: 763  HYPEEFYAAAMCFDMDQSEKLAVFVDDARRNGIEVAAPDLNRSEAEFSVERTDDGYAVRY 822

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LA ++ VG      I+    A   F+SL+DF SR+    +N R LE+L+ AGA D    
Sbjct: 823  GLAGLRNVGEKAMDAIVAEREAHGWFESLDDFFSRLPKGAMNSRQLEALIAAGAFDHLEP 882

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R QL  ++D +   A    + R++  E +F +E  + +  + ++     + + R   E+
Sbjct: 883  NRGQLTANVDLLLAVADAAIRERSSGQEGLFGNE-DSANQGLRMKDAEDWSRAERMAKER 941

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESV-----ATIRGNNIRLAAMVVSKQQKKTRK 1011
               GFYFS HP++ ++ +    G + Y   +        RG  + +AAMV   ++ +TR+
Sbjct: 942  ETFGFYFSAHPIEQFRDVASANGARSYSSLMTGGPAGEARGRAV-IAAMVEGAKRGQTRR 1000

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G       FS+   ++ A  F
Sbjct: 1001 GKDFIRADFSDSTGQFSAACF 1021


>gi|217962084|ref|YP_002340654.1| DNA polymerase III DnaE [Bacillus cereus AH187]
 gi|229141330|ref|ZP_04269868.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST26]
 gi|217066627|gb|ACJ80877.1| DNA polymerase III, alpha subunit [Bacillus cereus AH187]
 gi|228642111|gb|EEK98404.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST26]
          Length = 1108

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1027 (36%), Positives = 581/1027 (56%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    N    AE+    ++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLENKESQAEEVARAYQNMFG-NFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+          G   + +  RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  MYLRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  IHP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYIHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPTLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|222098066|ref|YP_002532123.1| DNA polymerase iii dnae [Bacillus cereus Q1]
 gi|221242124|gb|ACM14834.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
          Length = 1108

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1027 (35%), Positives = 583/1027 (56%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMFG-NFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----ANETND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+          G   + + +RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  MYLRRVCEEGLQK-------RYGTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  IHP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYIHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPTLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|42783781|ref|NP_981028.1| DNA polymerase III DnaE [Bacillus cereus ATCC 10987]
 gi|42739711|gb|AAS43636.1| DNA polymerase III, alpha subunit [Bacillus cereus ATCC 10987]
          Length = 1108

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1027 (35%), Positives = 582/1027 (56%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARMYQNMFG-NFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPAFISKINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+          G   + + +RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  MYLRRVCEEGLQK-------RYGTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPTLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|324328496|gb|ADY23756.1| DNA polymerase III DnaE [Bacillus thuringiensis serovar finitimus
            YBT-020]
          Length = 1108

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1027 (36%), Positives = 584/1027 (56%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++  K              +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEEEKP-----------YPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMFG-NFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----ANETND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+          G   + +  RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  TYLRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ Q+   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIMQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|91761976|ref|ZP_01263941.1| DNA polymerase III alpha subunit [Candidatus Pelagibacter ubique
            HTCC1002]
 gi|91717778|gb|EAS84428.1| DNA polymerase III alpha subunit [Candidatus Pelagibacter ubique
            HTCC1002]
          Length = 1138

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1033 (40%), Positives = 631/1033 (61%), Gaps = 32/1033 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL++H+ YS+ EGA+ ++N+ D     + P + I+DT+NL  ALEF++     G QPI
Sbjct: 9    FNHLKIHTQYSICEGAIKIDNLKDFCKEKKIPCLGISDTSNLCGALEFAENISKVGTQPI 68

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG Q+    +D   +             + L+     GY+R+IEL SR YL +       
Sbjct: 69   IGTQIYFRFEDTTGL-------------LPLIALNENGYKRIIELSSRSYLENDALSDPH 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + +  L  I TEG+ +L+G   G   + F         K   +    F D  Y+ +QRH 
Sbjct: 116  LDVKDLL-IDTEGVSLLSGTIQGLFGKLFEKGRLDEISKLYRSLSSKFNDNFYLEIQRHG 174

Query: 191  GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              +     +  ++ +   ++P++ATN   +L+ + +EAHD L  +   T V++K+R + +
Sbjct: 175  DQNEIAFEKFNLEQSLKIQIPIIATNEVYYLTPDMHEAHDALTCIGSKTYVNEKNRIKYS 234

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              HY K+  EM  +FSDLPEALEN   +  +C+F  Q   P+LP    ++        + 
Sbjct: 235  NQHYFKSNEEMSKLFSDLPEALENNFNLPFKCNFRPQFSKPVLPNISSEKG----GSADE 290

Query: 310  ELRNKAVAGLEVRL------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             L+  ++ GL+ +        +  +        Y+ RLD EL +I  MK+  YFLIV+D+
Sbjct: 291  ILKKDSLDGLKEKFLKVFKVEENNLKTDDKFLKYKDRLDHELKIIIEMKYPSYFLIVSDY 350

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N+IPVGPGRGSGAGS+ A+ L+ITD+DP++F+L+FERFLNPDR+SMPDFDIDFC
Sbjct: 351  IKWAKNNDIPVGPGRGSGAGSLVAWCLSITDVDPIKFNLIFERFLNPDRVSMPDFDIDFC 410

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            +++RD V +Y+  KY  + VA IITFG L+A+  +RDVGR L +PY  VD + K+IP DP
Sbjct: 411  EEKRDLVFKYLTTKYK-DSVAHIITFGKLKARMVIRDVGRVLGLPYGFVDSISKMIPFDP 469

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            + P S  + I  + R ++    DP V +L ++S KLEGL R+ +THAAG+VI DR L+++
Sbjct: 470  SRPQSLTECINSEPRLQKLVNEDPRVKKLTDLSLKLEGLNRNVATHAAGVVIADRKLTEV 529

Query: 543  VPMYRDVRSDLPV--TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            VP+Y+D  +DL +  TQF+M   E AGLIKFDFLGLKTLT++ ++   + ++     +  
Sbjct: 530  VPLYKDAAADLLLPSTQFDMYSAENAGLIKFDFLGLKTLTVINRTQKLINKKVKDFKIED 589

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            I FDD + + LL++  T+G+FQ+ES+GMR+AL  M+P+ IEDIIALV+LYRPGP+ NI +
Sbjct: 590  IDFDDQKVFELLSSGNTVGLFQVESAGMREALLQMKPNHIEDIIALVALYRPGPMSNIPI 649

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            YN+ K+G++    +HPL++ +LK T GVIIYQEQVMQIAQ LSG++  EAD+LRRAMGKK
Sbjct: 650  YNDCKHGRQTPDYLHPLLEDILKPTYGVIIYQEQVMQIAQKLSGFTAGEADILRRAMGKK 709

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             + E++KQK+ FI+GA KNGISK +A +IF  +  FA+YGFNKSHAAAYA+ISYQTA++K
Sbjct: 710  KRAELEKQKQGFIAGALKNGISKEVAASIFLKIEPFAEYGFNKSHAAAYAIISYQTAFLK 769

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
            T+YP EF AASMT+++ N  K+ +F ++ ++ NI+++ P +N    DF+  DN  YY+L 
Sbjct: 770  TYYPKEFFAASMTMDISNQNKLGEFHEELKRINIKVIRPDINKCFADFQFDDNNFYYALG 829

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK VG     ++++    +  F S+ DF +RV+ K +N+  LE LV AGA D    +R 
Sbjct: 830  GIKSVGYEAISNVVKERNENGDFKSINDFLNRVNPKDINKLQLEGLVKAGAFDNIDNNRQ 889

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
             L  S+ N     + + +N+     ++F  ++   ++ +            R   E   +
Sbjct: 890  ALFNSIPNFILKTKNIYENKAANQIDLFGSDEEQDNEIVL--NIEDWKFEDRLSREFEAI 947

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            GF+ S HPL+ +K I     I  Y +           +AA ++   ++KT KG+  G + 
Sbjct: 948  GFFISDHPLNQFKEIFDDYKIVDYAQFNLDDTIKEANIAATLLKITERKTAKGNSYGVIK 1007

Query: 1020 FSEPAKEYEANFF 1032
            F++    +E   F
Sbjct: 1008 FTDLTSVFELFIF 1020


>gi|206977128|ref|ZP_03238027.1| DNA polymerase III, alpha subunit [Bacillus cereus H3081.97]
 gi|206744613|gb|EDZ56021.1| DNA polymerase III, alpha subunit [Bacillus cereus H3081.97]
          Length = 1108

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1027 (35%), Positives = 583/1027 (56%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMFG-NFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----ANETND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+          G   + + +RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  MYLRRVCEEGLQK-------RYGTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|229099065|ref|ZP_04229999.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-29]
 gi|228684293|gb|EEL38237.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-29]
          Length = 1108

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1027 (35%), Positives = 582/1027 (56%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------EKSYPLVLLAEDEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+   T++ +F D  Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKEDQAEEVACTYQNMF-DNFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPEFISKVNVPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS   EA+ NTV+IA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHTEEAIYNTVKIAERCKVEIPFHVNQLPKFPVP----SNETND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL           G   + + +RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  TYLRRACEEGLHK-------RYGTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERQHFVQGCLRNGYDETSADKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQKSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ +K +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALLEERESKMFEDLFEFCLRMPAKFVTERNLEAFVWSGCFDDFGISRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRNKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVVFP 984


>gi|293608355|ref|ZP_06690658.1| DNA polymerase III [Acinetobacter sp. SH024]
 gi|292828928|gb|EFF87290.1| DNA polymerase III [Acinetobacter sp. SH024]
          Length = 1187

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1039 (36%), Positives = 583/1039 (56%), Gaps = 47/1039 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + ++++    DQ PA+A+TD +NL +A++F       GI+P+
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVNAAVKDQMPALALTDLSNLHAAVKFYNSCLKKGIKPL 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + +D                      LL  +  G++ L E+VSR ++  Q      
Sbjct: 63   LGSTIRLD---------------DAQHRATLLAMSNVGWKSLTEIVSRGFIEGQQLSIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E   + +I+L G     + +    ++ Q A   L  + + FG+R+Y+ L R  
Sbjct: 108  VQKEWVLEQHQD-IIVLLG-QHSDVGQMLCSSNPQKAAPLLEAWIEKFGNRVYLALTRTD 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     +  +LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   RPR  
Sbjct: 166  RPGEEDFIQEAAKLAAQYNVGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADDRRPRLY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ + K  +EM+ +FSD+P A+ENT  IA+RC+  LQ+    LP +   +   I    +
Sbjct: 226  SPEQHFKTSNEMIELFSDIPSAIENTYNIAKRCNVSLQLGTYFLPDYPIPDGFTI----D 281

Query: 309  NELRNKAVAGLEV------RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE        + +         + Y +R+D+E+ +I +M F GYFLIV D
Sbjct: 282  TYFEHLSKVGLEERLDYLYPVEKRGEDWPEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ K++P  
Sbjct: 402  CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537
            P       AI  + + ++      + D      + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGVDLATAIEMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGITRNTGKHAGGVVIAPG 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +     D
Sbjct: 522  KITDFSAVLCDEDGTSRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSND 581

Query: 598  ---LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               +S +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  PLIISHVPLDDAKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +   +        +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L  AD+LR
Sbjct: 642  MDLIPDFI-HRMHGGDFEYLHPLLEGVLEPTYGIMVYQEQVMQTAQICAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ F++GA++ GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRQIFLAGAAEKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TAW+K HYP EF+AA M+ EM N + +     D R   ++++PPSVN     F   D++
Sbjct: 761  HTAWLKAHYPAEFMAAVMSSEMQNTDSVVFLIDDCRNNGLEVLPPSVNMSTYHFHASDDK 820

Query: 835  -IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L AIKGVG    + ++++     P+  L DFC R+D KK+N+R LE+L+ AGALD
Sbjct: 821  TIVYGLGAIKGVGEQAMQSVIDSRRQFGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A+    NR +   ++F   +     +   +     +  VR 
Sbjct: 881  CLGIERASLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+          
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRQELKAFIPVKLNEITATRRGVTTVYAGLVIDVANFP---- 994

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
            +R+  V   +     E + 
Sbjct: 995  NRVVIV-LDDGTARIEVSC 1012


>gi|229076107|ref|ZP_04209075.1| DNA polymerase III subunit alpha [Bacillus cereus Rock4-18]
 gi|228706970|gb|EEL59175.1| DNA polymerase III subunit alpha [Bacillus cereus Rock4-18]
          Length = 1108

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1027 (35%), Positives = 583/1027 (56%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKYGIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------EKSYPLVLLAEDEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS   EA+ NTV+IA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHTEEAIYNTVKIAERCKVEIPFHVNQLPKFPVP----SNETND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL           G   + + +RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  TYLRRVCEEGLHK-------RYGAPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERQHFVQGCLRNGYDETSADKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQKSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ +K +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALLEERESKMFEDLFEFCLRMPAKFVTERNLEAFVWSGCFDDFGISRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRNKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVVFP 984


>gi|228935912|ref|ZP_04098722.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            andalousiensis BGSC 4AW1]
 gi|228823680|gb|EEM69502.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            andalousiensis BGSC 4AW1]
          Length = 1108

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1027 (35%), Positives = 582/1027 (56%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFG-NFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+          G   + +  RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  MYLRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|94498252|ref|ZP_01304812.1| DNA polymerase III, alpha subunit [Sphingomonas sp. SKA58]
 gi|94422254|gb|EAT07295.1| DNA polymerase III, alpha subunit [Sphingomonas sp. SKA58]
          Length = 1181

 Score =  686 bits (1769), Expect = 0.0,   Method: Composition-based stats.
 Identities = 463/1050 (44%), Positives = 629/1050 (59%), Gaps = 36/1050 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  + +FV L++ SS+++LEGA+    I  +  A   PA AITD N L+ ++ FS     
Sbjct: 1    MSHA-AFVPLRIFSSFTMLEGAIDPKKIAKQARALGFPAAAITDRNGLYGSMAFSDACKG 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPIIG  L +          Q          I L    A GY  +  LVS  +L   
Sbjct: 60   EGVQPIIGAMLGVLRPGRPANAAQVHDW------ITLYAQDARGYDNICALVSMAHLDRP 113

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             ++   + L  L E  T+G+I LT G  G + R F  +    A       + LF DRLYV
Sbjct: 114  VEEVPHVTLDAL-EGRTDGVIALTAGGEGALARLFAEDQPDAALAYAERLEALFPDRLYV 172

Query: 185  NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             + R     +   E+ ++ LAY   LPLVATN + F     +EAHDV++ +A S  V   
Sbjct: 173  EICRRLDPVEGKAEAALLDLAYDRGLPLVATNPTCFTEPHFHEAHDVMLCIADSAYVDTA 232

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR + +PD ++K  +EM  +F DLPEAL NT+ +A+RC+           + I       
Sbjct: 233  DRRKSSPDAWMKPAAEMKRLFEDLPEALANTLVVAQRCAVAAPK-----RKPILPSLAGD 287

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             + E   LR++A  GLE RL +  I      + Y +RL FE ++I +M F GYFLIVADF
Sbjct: 288  IEGEAAMLRDQAAEGLEARLEKAGILGEEMRRPYYERLKFETDIIIQMGFPGYFLIVADF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK+ +IPVGPGRGSGAGS+ A+ALTITD+DPL+  LLFERFLNP+R+SMPDFDIDFC
Sbjct: 348  IKWAKEQDIPVGPGRGSGAGSLVAWALTITDLDPLQLGLLFERFLNPERVSMPDFDIDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            + RR EVIRYVQ KYG + VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P
Sbjct: 408  ETRRGEVIRYVQQKYGADHVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHP 467

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              P +  +++   S F+     D  V RL++ + KLEG  RH+STHAAG+VIGDRPLSQL
Sbjct: 468  TDPWTLERSLNGVSEFKAEYDNDNQVKRLIDYAMKLEGFPRHSSTHAAGVVIGDRPLSQL 527

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD RSD+PVTQF+MK++E AGL+KFDFLGLKTL++LQK++  L+ RGV VDL  + 
Sbjct: 528  VPLYRDPRSDMPVTQFDMKYVEGAGLVKFDFLGLKTLSVLQKAVQLLSARGVTVDLDTLA 587

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +DD   Y LL    T+G+FQLES GMR+ L  ++P    DIIALVSLYRPGP+DNI ++ 
Sbjct: 588  WDDTAVYDLLQRGDTVGVFQLESEGMRKTLAAVRPTNFGDIIALVSLYRPGPMDNIPMFG 647

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RKNG+E I   H L+ P+L+ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKKIK
Sbjct: 648  RRKNGQEDIEYPHILLKPILEETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKIK 707

Query: 723  EEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             EMD Q+ RF+   A+K+ I    A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K 
Sbjct: 708  AEMDAQRARFVEGCAAKSDIPAAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKA 767

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------- 831
            HYP EF A SM  ++   EK+  F  D R+  +  + P +N    DF V           
Sbjct: 768  HYPAEFYAGSMAFDIHLTEKLTVFVDDMRRMGLTCLAPDINRSEADFTVEPVAYEGEDAR 827

Query: 832  -DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                + Y+L  +KGVG      ++E       F SL+DF  R++ + LNRR LESL  AG
Sbjct: 828  LGFAVRYALGGLKGVGEKAMEQLVEERNKGGAFKSLDDFADRIEPRLLNRRQLESLAAAG 887

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A D     R  +  + + I   A      R +    +F   +   +D + +        +
Sbjct: 888  AFDGIHADRAGVHAAAETILSVASSNAAARESGQGGLFGDVETPHAD-VRIPPHQAWTVA 946

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES------VATIRGNNIRL-AAMVV 1002
             R   E+   GFYFS HP+D YK +    G + Y              G  + + AAMV 
Sbjct: 947  DRMAQEKEAFGFYFSAHPVDRYKHLADARGARSYGLICQSPMPAPNAEGRAMTIMAAMVE 1006

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + ++T++G+R    TFS+ + +++A+ F
Sbjct: 1007 DVRWRETKRGARYASATFSDQSGQFQASCF 1036


>gi|311741557|ref|ZP_07715381.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium
            pseudogenitalium ATCC 33035]
 gi|311303727|gb|EFQ79806.1| DNA-directed DNA polymerase III alpha subunit [Corynebacterium
            pseudogenitalium ATCC 33035]
          Length = 1194

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1077 (27%), Positives = 519/1077 (48%), Gaps = 51/1077 (4%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +   + K+ SFVHL  H+ +S+L+G   ++ + D++   + PA+ +TD  N++ +  F +
Sbjct: 1    MMSRMAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVVRQEMPAVGMTDHGNMYGSDAFYR 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            +   AG++PIIG +  +  +                    +         ++   A G +
Sbjct: 61   RMTGAGVKPIIGIEAYMAPESRFNKKRVLWGTPDQKRDDVSASGAYLHQTMIAENATGLR 120

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
             L  L S      Q  +  R+    + E   +G+I  TG  SG +           A + 
Sbjct: 121  NLFTLSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFNEALEA 179

Query: 171  LLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
               ++ ++G D  ++ L  H    ++     ++++    +LP + TN+  ++ E    AH
Sbjct: 180  AAMWQDIYGKDNFFLELMDHGLDIEKRTRDGLLEIGRKLDLPPLVTNDCHYVLESQAPAH 239

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQ 286
            + ++ V         DR +     Y    +  +    D       +NT+ IA R     +
Sbjct: 240  EAMLCVQTGKTFMDPDRFKFGGTGYYIKSAAQMRETWDDMIPDGCDNTLWIAERVQDYGE 299

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
            +        +            + L ++ + GL+ R     +      ++Y +R  +E++
Sbjct: 300  IWEEHTHDRMPIADVPEGHTPTSWLTHEVMEGLQKRFPGQDV-----PEEYIERAKYEIS 354

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI    +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDPL   LLFER
Sbjct: 355  VIEMKGYPSYFLIVAELIKHARSVGIRVGPGRGSAAGALVAYALTITNIDPLEHDLLFER 414

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R S PD DIDF   RR E+I Y   ++G ++VAQ+ITFG+++ K A++D  +   
Sbjct: 415  FLNPERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKDSAKVHF 474

Query: 467  MPYSQVDR-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
                               + K IP         +  ++ +  R+   +DP V ++ + +
Sbjct: 475  GQPGFQMADRINGALPPAIMAKDIPLKGITDPDHERYSEAAEVRQMVESDPDVKKIYDTA 534

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + LEG+ R A  HA  +++    L   +PM++       +T ++    E  GL+K DFLG
Sbjct: 535  RGLEGVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMDFLG 594

Query: 576  LKTLTLLQKSLDFLAQRG----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            L+ LT++  +++ + +          L        + Y LL+   TLG+FQL+S GM++ 
Sbjct: 595  LRNLTVIGDAIENIKRNRGEEIHLEQLHADDPKVSKVYDLLSRGDTLGVFQLDSGGMQEL 654

Query: 632  LEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKET 685
            L+ M+P   +DI+A ++LYRPGP+  +    Y +RKNG+++I  IHP ++      L ET
Sbjct: 655  LKRMKPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLKEILDET 714

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+I+YQEQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + +Q ++F  G  +NG SK+ 
Sbjct: 715  YGLIVYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMQENGYSKSA 774

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               ++  +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K   +
Sbjct: 775  MDALWGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKSAIY 834

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDS 864
              D R   I+++PPSVN    DF+     I + + AI+ VG+     I+++  D   F S
Sbjct: 835  LSDCRHLGIKVLPPSVNESEEDFQAVGEDIRFGMGAIRNVGSEVVESIIKSRHDKGAFTS 894

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
              D+  +++     +RV E+L+ AGA D   + R  L+   ++     Q  +K       
Sbjct: 895  FSDYLDKIELAACTKRVTEALIKAGAFDDLNHPRKGLMLIHEDAVDAVQTTKKAADKGQF 954

Query: 925  NIFAHEKGTFSDKIT---LEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
            ++FA   G   D  +            +       E+ +LG Y SGHPLD ++  L    
Sbjct: 955  DLFAGIGGGEDDAASNAFALDIPEDNWDRKHELALEREMLGLYVSGHPLDGFEEALAAQT 1014

Query: 980  IKGYEESVA--TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
                 + +      G  + +  ++    ++ +++ GS    VT  +    + E   F
Sbjct: 1015 DTPLTKILNDEVHNGQELIIGGIISGVDRRFSKRDGSPWAIVTVEDHNGAQVEILVF 1071


>gi|229118095|ref|ZP_04247454.1| DNA polymerase III subunit alpha [Bacillus cereus Rock1-3]
 gi|228665318|gb|EEL20801.1| DNA polymerase III subunit alpha [Bacillus cereus Rock1-3]
          Length = 1108

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1027 (35%), Positives = 581/1027 (56%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------EKSYPLVLLAEDEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+   T++ +F D  Y+ LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKEDQAEEVACTYQNMF-DNFYMCLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPEFISKVNVPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS   EA+ NTV+IA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHTEEAIYNTVKIAERCKVEIPFHVNQLPKFPVP----SNETND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL           G   + + +RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  TYLRRACEEGLHK-------RYGTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERQHFVQGCLRNGYDETSADKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQKSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ +K +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALLEERESKMFEDLFEFCLRMPAKFVTERNLEAFVWSGCFDDFGISRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRNKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVVFP 984


>gi|320102869|ref|YP_004178460.1| DNA polymerase III subunit alpha [Isosphaera pallida ATCC 43644]
 gi|319750151|gb|ADV61911.1| DNA polymerase III, alpha subunit [Isosphaera pallida ATCC 43644]
          Length = 1243

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/950 (36%), Positives = 538/950 (56%), Gaps = 29/950 (3%)

Query: 4   YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +   P FVHL  HS YSLL+GA  + +++ +  +    A+A+TD  NL +A+EF +++ 
Sbjct: 8   AMSHRP-FVHLHCHSHYSLLDGASKIPDLIARAKSLGMNALAVTDHGNLHAAMEFLRESK 66

Query: 64  AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
           AA  QPIIG +  +           G     T   + LL   AEG++ L+ L S+ +L +
Sbjct: 67  AADFQPIIGLEAYVAPGHRASKIPGGCNGQETSFHLTLLARDAEGFRNLMRLSSKAFL-E 125

Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182
                 RI    L E  ++GLI L+G +S         +  + AE+    + K+FG +  
Sbjct: 126 GFYYKPRIDKEIL-ERHSKGLICLSGCASSEFSDFLLHDRFEEAERLAAWYLKVFGPENF 184

Query: 183 YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
           ++ +Q +     +  E + + LA    LPLVAT+++ +L+ ED  AHDVL+ +      +
Sbjct: 185 FIEIQNNGVAIQKECEEKSIDLARRMGLPLVATSDAHYLTREDAPAHDVLLCINTGKTFN 244

Query: 242 QKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              R R  T + ++++  EM        +AL+ + +IA R  +             +   
Sbjct: 245 DPTRMRFETDEFFIRSPEEMYRAMPGHEDALKRSADIAARIDYSGLDLGTRRFPVFKP-- 302

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
               +  E  LR     GL  R             +  +RL+ EL +I RM F+ YFLIV
Sbjct: 303 -PTGQTPEEYLRALCQRGLVERYGNN------PPPEATRRLEHELEIILRMGFASYFLIV 355

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            DF+++A++  IP    RGS  G++ +Y L ++ +DPL + LLFERFL+P+R   PD DI
Sbjct: 356 WDFVRFARERGIP-NSARGSACGALVSYVLHLSHVDPLTYDLLFERFLDPNRSEAPDIDI 414

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           D CQ+RR EVI YV+NKYG E VAQI TFG+L A+A LRDVGR L +P S+VD++ KL+P
Sbjct: 415 DLCQERRYEVIEYVRNKYGVENVAQIGTFGTLAARAVLRDVGRVLGIPLSKVDQVAKLVP 474

Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                 +  QAI  +   R     DP V R+L+  ++LEGL R+  THAAG+VI DRPL 
Sbjct: 475 QVLNISLD-QAIKQEPELRRLGELDPEVGRMLDYGRRLEGLVRNVGTHAAGVVIADRPLI 533

Query: 541 QLVPMY----RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK- 595
           +LVP+     +D   ++  TQ++M  +EKAGL+K DFLGL+ LT+L +++  +  R  + 
Sbjct: 534 ELVPLQKLPNKDKEKEVVTTQWDMGDVEKAGLLKMDFLGLRNLTILDRAVRLIRARHPRL 593

Query: 596 -VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              +  +P DD +T+ LL    T G+FQLES+G+R  L  M+PD   DIIA  +LYRPGP
Sbjct: 594 DFRIENLPLDDPDTFALLQKGETKGVFQLESAGIRDLLIKMKPDVFNDIIATNALYRPGP 653

Query: 655 ID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           ++   +  Y + K+G+++    HP++  +L+ET GV++YQEQVM+I   L G  LS A  
Sbjct: 654 LNGGMVDDYIDCKHGRKQPNYPHPVMREILEETHGVMVYQEQVMRILNRLGGIELSAAYQ 713

Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
             +A+ KK  E + K K +F++GA + G++K  A  IF+L+  F  YGFNKSH+ AYA++
Sbjct: 714 CIKAISKKKTEVIAKNKAQFVAGAVERGLAKEKAEEIFDLIEYFGGYGFNKSHSTAYALV 773

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMD--NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
           +YQTA++K H+P E++AA ++ E+D    +K+ +  +D R+  I+++PP +N+   +F V
Sbjct: 774 AYQTAYLKAHFPTEYMAALLSSEIDGAERDKLVEHIEDCRRMGIEVLPPDINSGEAEFAV 833

Query: 831 GD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            D  +I +SLAAIKGVG      I++   +  PF  + DF  RV S+ +    +E L+ A
Sbjct: 834 VDQGKIAFSLAAIKGVGIKAVEAIVKERNERGPFAHIGDFLERVPSQVVTSSTVEILIKA 893

Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
           GA D  G +R QLL +L  + + AQ  +++R     N+F           
Sbjct: 894 GAFDHLGGNRAQLLAALPRLVQAAQTAQEDRKRGQRNLFDAIADDPPKPF 943



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             S++   E++VLGFY S HPL  +  ++R +     ++         I L  M+ S Q K
Sbjct: 1004 DSLKLAEEKKVLGFYMSSHPLTRHAAMIRALASHSIDQLADVPEKTEIILGGMIASMQIK 1063

Query: 1008 ---KTRKG-SRIGWVTFSEPAKEYEANFFP 1033
               K+R G +R+  +TF +      A  +P
Sbjct: 1064 TVQKSRSGLTRMAKLTFEDLTGSMPAMLWP 1093


>gi|322379743|ref|ZP_08054053.1| DNA polymerase III subunit alpha [Helicobacter suis HS5]
 gi|321147814|gb|EFX42404.1| DNA polymerase III subunit alpha [Helicobacter suis HS5]
          Length = 1212

 Score =  685 bits (1768), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1056 (34%), Positives = 583/1056 (55%), Gaps = 45/1056 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  +  +  KI      +++++D  N+F A++F       GI+PI
Sbjct: 19   FTHLHLHTEYSLLDGANKIKVLAKKIKELGMESVSMSDHGNMFGAIDFYTCMKKEGIKPI 78

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  I    NL     G         + L     EGY  L+ L S+ +L +      R
Sbjct: 79   IGMEAYIHNSTNL-----GDKQSKQRFHLCLYAKDLEGYHNLMYLSSQAFL-EGFYYFPR 132

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180
            I    L+E   +GLI  +    G I+                    A++    ++ +FG+
Sbjct: 133  INKKLLKER-CKGLICSSACLQGEINWHLNTLSEKNKKYGAKGYDEAKRVAEEYQSIFGE 191

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ + RH   ++   E Q+++L+    + L+ATN++ + ++ED  A ++ M VA    
Sbjct: 192  DFYMEIMRHGIANQLFIEDQILKLSLETGIKLIATNDTHYTNQEDASAQEIAMCVAMGKT 251

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R R +  + Y+K+ ++M  +F+D+PEALENT EIA++C   + +     P    +
Sbjct: 252  LNDPTRLRHSVHEFYIKSPAQMAKLFADIPEALENTQEIAQKCQLEIDLKDESNPPTPPR 311

Query: 299  ECDDIQ---------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                 +         KE+     +KA  GL+ RL    I +      Y +RL++E+ VI 
Sbjct: 312  FKFTQEYALSEGLDIKEDAPYFAHKAREGLKKRLEMVDIKEHAR---YEERLEYEIKVIT 368

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
             M+F+GY LIV DF+++A++NNIPVGPGRGS AGS+ A+ L ITDIDPL++ LLFERFLN
Sbjct: 369  DMRFAGYMLIVWDFVRYARENNIPVGPGRGSAAGSLVAFCLQITDIDPLKYDLLFERFLN 428

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPD D DFCQ RR E++ Y+  KYG   VAQ+ITF  + AK  +RDV R L MPY
Sbjct: 429  PERVSMPDIDTDFCQRRRGEMLDYMIAKYGKYNVAQVITFNKMLAKGVIRDVARVLDMPY 488

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
             + D + KLIPN     +  +A   + + +           + + S +LE L R A  HA
Sbjct: 489  KEADEMAKLIPNRLGITL-QEAYDLEPKIQTLLQTSTLAKEVWDFSLRLENLNRSAGKHA 547

Query: 530  AGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            A +V+  +R L    P+Y   R+   VTQ++MK++E   LIKFDFLGLKTLT++  +L+ 
Sbjct: 548  AALVVDSERELWYKTPLYTSERTGGIVTQYSMKYLEAIDLIKFDFLGLKTLTVIHDALNI 607

Query: 589  LAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            + +    K+D   +  DD + Y  +    T+GIFQ+ES   +   + ++P   EDIIA++
Sbjct: 608  IKKYSHEKIDFLRVDMDDPKVYATIQEGNTVGIFQIESGMFQTLNKRLRPSRFEDIIAII 667

Query: 648  SLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +L RPGP+++ +   + NRK+G   I  +   ++P+L+ T G IIYQEQVMQI Q ++G+
Sbjct: 668  ALGRPGPMESGMVDDFVNRKHGSAPITYMFDALEPILRPTYGTIIYQEQVMQIVQTIAGF 727

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            SL EAD++RRAMGKK  + M   + +F+ GA K G     A  +F+L+ KFA YGFNKSH
Sbjct: 728  SLGEADLIRRAMGKKDAQIMADNRAKFVEGAEKKGFDCNKAGELFDLIVKFAGYGFNKSH 787

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAYA++++QTA++KTHY   F+AA ++ E  +++ +  + ++A    I+I  P VN   
Sbjct: 788  SAAYAMLTFQTAYLKTHYKHAFMAAMLSSECRHIDSVAYYVEEANSMGIEIKRPHVNVSD 847

Query: 826  VDFKVGDNR----IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRR 880
            V F+V D      I + L AIKG G      ++E       F  LED  S++D  K ++R
Sbjct: 848  VQFRVQDQEGERVIIFGLEAIKGAGEGPLGMLVELREKYGKFKDLEDLISKIDFSKFSKR 907

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KGTFSDKI 938
            +LE L+ +G+LD  GY+R  +L++LD I +  +  +K+       +FA+   +      +
Sbjct: 908  ILEPLIKSGSLDNLGYNRRTMLENLDLICEEGRRKDKSNAQMSGGLFANLSTEDQEKAHL 967

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRL 997
            TL+ +   + S   + E   +G YFSGHPLD +K  ++ +  +    + +    G+    
Sbjct: 968  TLKIYDEYDDSTLLDFEYECMGLYFSGHPLDAFKDQIKALKNVAKSRDILRLEIGSQATF 1027

Query: 998  AAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
               ++  ++K  +K G   G  +  + +  ++   F
Sbjct: 1028 IGKILELKRKIGKKSGKPYGEASIVDLSGRFDLLLF 1063


>gi|71083603|ref|YP_266322.1| DNA polymerase III subunit alpha [Candidatus Pelagibacter ubique
            HTCC1062]
 gi|71062716|gb|AAZ21719.1| DNA polymerase III alpha subunit [Candidatus Pelagibacter ubique
            HTCC1062]
          Length = 1138

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/1033 (40%), Positives = 630/1033 (60%), Gaps = 32/1033 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL++H+ YS+ EGA+ ++N+ D     + P + I+DT+NL  ALEF++     G QPI
Sbjct: 9    FNHLKIHTQYSICEGAIKIDNLKDFCKEKKIPCLGISDTSNLCGALEFAENISKVGTQPI 68

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG Q+    +D   +             + L+     GY+R+IEL SR YL +       
Sbjct: 69   IGTQIYFKFEDTTGL-------------LPLIALNENGYKRIIELSSRSYLENDALSDPH 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + +  L  I TEG+ +L+G   G   + F         K   +    F D  Y+ +QRH 
Sbjct: 116  LDVKELL-IDTEGVSLLSGTIQGLFGKLFEKGRLDEISKLYRSLSSKFNDNFYLEIQRHG 174

Query: 191  GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              +     +  ++ +   ++P++ATN   +L+ + +EAHD L  +   T V++K+R + +
Sbjct: 175  DQNEIAFEKFNLEQSLKIQIPIIATNEVYYLTPDMHEAHDALTCIGSKTYVNEKNRIKYS 234

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              HY K+  EM  +FSDLPEALEN   +  +C+F  Q   P+LP    ++        + 
Sbjct: 235  NQHYFKSNEEMSKLFSDLPEALENNFNLPFKCNFRPQFSKPVLPNISSEKG----GSADE 290

Query: 310  ELRNKAVAGLEVRL------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             L+  ++ GL+ +        +  +        Y+ RLD EL +I  MK+  YFLIV+D+
Sbjct: 291  ILKKDSLDGLKEKFQKVFKIEENNLKTDDKFLKYKDRLDHELKIIIEMKYPSYFLIVSDY 350

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N+IPVGPGRGSGAGS+ A+ L+ITD+DP++F+L+FERFLNPDR+SMPDFDIDFC
Sbjct: 351  IKWAKNNDIPVGPGRGSGAGSLVAWCLSITDVDPIKFNLIFERFLNPDRVSMPDFDIDFC 410

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            +++RD V +Y+  KY  + VA IITFG L+A+  +RDVGR L +PY  VD + K+IP DP
Sbjct: 411  EEKRDLVFKYLTTKYK-DSVAHIITFGKLKARMVIRDVGRVLGLPYGFVDSISKMIPFDP 469

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            + P S  + I  + R ++    DP V +L ++S KLEGL R+ +THAAG+VI DR L+++
Sbjct: 470  SRPQSLTECINSEPRLQKLVNEDPRVKKLTDLSLKLEGLNRNVATHAAGVVIADRKLTEV 529

Query: 543  VPMYRDVRSDLPV--TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            VP+Y+D  +DL +  TQF+M   E AGLIKFDFLGLKTLT++ ++   + ++     +  
Sbjct: 530  VPLYKDAAADLLLPSTQFDMYSAENAGLIKFDFLGLKTLTVINRTQKLINKKVKDFKIED 589

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            I FDD + + LL++  T+G+FQ+ES+GMR+AL  M+P+ IEDIIALV+LYRPGP+ NI +
Sbjct: 590  IDFDDQKVFELLSSGNTVGLFQVESAGMREALLQMKPNHIEDIIALVALYRPGPMSNIPI 649

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            YN+ K+G++    +HPL++ +LK T GVIIYQEQVMQIAQ LSG++  EAD+LRRAMGKK
Sbjct: 650  YNDCKHGRQTPDYLHPLLEDILKPTYGVIIYQEQVMQIAQKLSGFTAGEADILRRAMGKK 709

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             + E++KQK+ FI+GA KNGISK +A +IF  +  FA+YGFNKSHAAAYA+ISYQTA++K
Sbjct: 710  KRAELEKQKQGFIAGALKNGISKEVAASIFLKIEPFAEYGFNKSHAAAYAIISYQTAFLK 769

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
            T+YP EF AASMT+++ N  K+ +F ++ ++ NI+++ P +N    DF+  DN  YY+L 
Sbjct: 770  TYYPKEFFAASMTMDISNQNKLGEFHEELKRINIKVIRPDINKCFADFQFDDNNFYYALG 829

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK VG     ++++    +  F S+ DF +RV+ K +N+  LE LV AGA D    +R 
Sbjct: 830  GIKSVGYEAISNVVKERNENGDFKSINDFLNRVNPKDINKLQLEGLVKAGAFDNIDNNRQ 889

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
             L  S+ N     + + +N+     ++F  +    ++ +            R   E   +
Sbjct: 890  ALFNSIPNFILKTKNIYENKAANQIDLFGSDDEQDNEIVL--NIEDWKFEDRLSREFEAI 947

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            GF+ S HPL+ +K I     I  Y +           +AA ++   ++KT KG+  G + 
Sbjct: 948  GFFISDHPLNQFKEIFDDYKIVDYAQFNLNDTIKEANIAATLLKITERKTAKGNSYGVIK 1007

Query: 1020 FSEPAKEYEANFF 1032
            F++    +E   F
Sbjct: 1008 FTDLTSVFELFIF 1020


>gi|196047476|ref|ZP_03114687.1| DNA polymerase III, alpha subunit [Bacillus cereus 03BB108]
 gi|225866581|ref|YP_002751959.1| DNA polymerase III, alpha subunit [Bacillus cereus 03BB102]
 gi|196021691|gb|EDX60387.1| DNA polymerase III, alpha subunit [Bacillus cereus 03BB108]
 gi|225787407|gb|ACO27624.1| DNA polymerase III, alpha subunit [Bacillus cereus 03BB102]
          Length = 1107

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1027 (35%), Positives = 582/1027 (56%), Gaps = 50/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEE------------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 106

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG   Y++LQ H 
Sbjct: 107  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFG-NFYMSLQHHA 164

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 165  IQDELLLQEKLPAFINRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 224

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F         +  +
Sbjct: 225  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETND 280

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+          G   + +  RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 281  MYLRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 334  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 394  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 453

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 454  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 511

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +
Sbjct: 512  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 572  TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 632  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 692  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 752  MTALLSSAIGNEDKIMQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 811

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 812  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 871

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 872  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 918

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 919  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 976

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 977  MEAVLFP 983


>gi|229124170|ref|ZP_04253362.1| DNA polymerase III subunit alpha [Bacillus cereus 95/8201]
 gi|228659472|gb|EEL15120.1| DNA polymerase III subunit alpha [Bacillus cereus 95/8201]
          Length = 1108

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1027 (35%), Positives = 582/1027 (56%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFG-NFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+          G   + +  RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  MYLRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|30249925|ref|NP_841995.1| dnaE1; DNA polymerase III (alpha chain) protein [Nitrosomonas
            europaea ATCC 19718]
 gi|30139032|emb|CAD85889.1| dnaE1; DNA polymerase III (alpha chain) protein [Nitrosomonas
            europaea ATCC 19718]
          Length = 1169

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/1055 (39%), Positives = 605/1055 (57%), Gaps = 50/1055 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P F+HL++HS YS+++G + +   + K      PA+A+TD +NLF  ++F Q A  
Sbjct: 1    MPIDPVFIHLRLHSEYSVVDGIVRVEEAVAKARDVGMPALALTDLSNLFGLVKFYQCAFK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI GC + +  +++                ++LL  +  GY  L  L+SR Y  + 
Sbjct: 61   AGIKPIAGCDVWVTNENDADRP----------FRLLLLCQSFSGYLLLSRLLSRAYRENM 110

Query: 125  GKQSVRICLSWLQE--IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             +    +  SW +E   GTEGLI L+GG  G +++         A      +  LF  R 
Sbjct: 111  CRGRAELKKSWFREEDAGTEGLIALSGGGQGEVEQLLLA-DPPAAVTAAQQWADLFPGRF 169

Query: 183  YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +QR  R  +      ++ LA + +LP+VAT+   F+  ED+ AH+  + +A   V+ 
Sbjct: 170  YLEIQRCGRPNEETSGYALLDLASSLKLPVVATHPVQFMRPEDFRAHEARVCIAQGYVLG 229

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             + RP+  T   Y K  +EM  +F D+PEAL N+VEIARRCS +L++    LP F     
Sbjct: 230  DRRRPKEFTGQQYFKTPAEMGELFRDVPEALANSVEIARRCSLMLELGVNRLPDFPTPAG 289

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
              +    E  LR  A  GLE RL Q     + +      Y+ RLDFE+  I +M F+GYF
Sbjct: 290  ISV----EQHLRELAQTGLEARLLQSFPQVLQRDERRPIYQMRLDFEVETIIQMGFAGYF 345

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK++++PVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 346  LIVADFIGWAKQHDVPVGPGRGSGAGSLVAYSLGITDLDPLLYDLLFERFLNPERVSMPD 405

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQDRR++VI YV+++YG E VAQI TFG++ AKA +RDVGR L +PY+ VD+L K
Sbjct: 406  FDIDFCQDRREQVIEYVRDRYGAESVAQIATFGTMAAKAVVRDVGRVLDLPYNFVDQLAK 465

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            L+P +    +       +    +    +  V  LLE++++LEGL R+   HA G++I   
Sbjct: 466  LVPFELGMTLRKAR-EIEPLLNQRAEEEEDVRNLLELAERLEGLTRNVGMHAGGVLIAPG 524

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG---- 593
             ++   P+Y     D  V+Q++   +EK GL+KFDFLGL+TLT+L +++  + Q      
Sbjct: 525  KITDFCPVYCADSGDAVVSQYDKDDVEKVGLVKFDFLGLRTLTILDRAVADIRQYRAASP 584

Query: 594  --------------VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
                              L  I  +D  T+ L+    T+GIFQ ES GM+  L+  +PD 
Sbjct: 585  GSAVAEPDVQSAEESHFSLESISLEDAATFSLMAKGNTVGIFQFESRGMKDLLQRARPDR 644

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
             ED+IALV+LYRPGP+D I  +  RK+GK ++  + P + P+L  T G++IYQEQVMQIA
Sbjct: 645  FEDLIALVALYRPGPMDLIPDFIERKHGK-RVDYLDPRLQPILGPTYGIMIYQEQVMQIA 703

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q++ GYSL  AD+LRRAMGKK  EEM +Q+  F+ GA +N +++  AV +F L+ KFA Y
Sbjct: 704  QVIGGYSLGGADLLRRAMGKKKVEEMAQQRAVFVEGAIRNEMAEADAVTLFGLMEKFAGY 763

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSHAAAYA+I+YQTA++KTHYP EF+AA M+ +MD+ +K+  F +D +   I I+PP
Sbjct: 764  GFNKSHAAAYALIAYQTAYLKTHYPAEFMAACMSSDMDDTDKVNVFYEDCKLNGIVILPP 823

Query: 820  SVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKL 877
             +N     F   D++ I Y L A+KG G      I++       F  L DFC RVD + +
Sbjct: 824  DINESGYYFVPVDHKTIRYGLGAVKGSGEAAISAIVQVREQGSTFTGLFDFCRRVDRRIV 883

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NRR +E+L+ AGA D    +R  LL+S+ N  +YA+    +      ++F  E       
Sbjct: 884  NRRTIEALIRAGAFDSVETNRAALLESVGNAMEYAEQC--SLAASQVSLF-DENTDLIQP 940

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
              +   +      + +NE+  LGFY SGHP D Y   L           V         +
Sbjct: 941  PAITGVAQWPEREKLQNEKMALGFYLSGHPYDSYARELSCFIPVRLSRIVPGREPQ--LI 998

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A ++ + + + +R+G  +  VT  +     E   +
Sbjct: 999  AGVIYAIRTQMSRRGK-MAIVTLDDGLARVEVVVY 1032


>gi|9105008|gb|AAF83017.1|AE003874_1 DNA polymerase III, alpha chain [Xylella fastidiosa 9a5c]
          Length = 1212

 Score =  685 bits (1767), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1081 (37%), Positives = 618/1081 (57%), Gaps = 75/1081 (6%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDT 49
             +  S SFVHL +H+ +SL +  + +                +L +      PA+A+TD 
Sbjct: 19   GMSTS-SFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDL 77

Query: 50   NNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
            NNLF+ ++F + A   GI+PI G  L I   ++                + LL     GY
Sbjct: 78   NNLFALIKFYKAAETVGIKPISGADLLIAEPEHTPWG------------MTLLCRDHAGY 125

Query: 110  QRLIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
              L +L+SR +L     +  V +   W+++   + L  L G       + F    + +AE
Sbjct: 126  LNLSQLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIG-RHSLAGQLFAKGRADLAE 183

Query: 169  KRLLTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            ++L  ++ +FG+ L++ L R     +       +Q+A    +P++A+N+  FL   D+ A
Sbjct: 184  QQLADWQHVFGNGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLA 243

Query: 228  HDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            H+  + +A   ++    RPR  +   YL++  EM ++F+D+P+AL+NT  +A+RC+  ++
Sbjct: 244  HEARVCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMR 303

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
            +    LP +         +  ++ +R ++  GLE RL +  +A G   +DY  RL+FEL+
Sbjct: 304  LGTYFLPNYPVPN----DETLDSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELD 359

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
             I +M FSGYFLIVADFIQW K+  IP+GPGRGSGAGS+ A+ L ITD+DPL ++LLFER
Sbjct: 360  TIIKMGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWTLLITDLDPLPYNLLFER 419

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPDFDIDFC +RRDEVI YV  KYG ERV+QIIT+G++ AKA +RDVGR L 
Sbjct: 420  FLNPERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLG 479

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADD------SRFREARLADPSVDRLLEISQKLEG 520
             PY  VD + KLIPN     +       +      +   +   A+  V  LL ++++LE 
Sbjct: 480  FPYGLVDSIAKLIPNTLGITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLED 539

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGL 576
            L R+A  HA G+VI   PL++  P++ +   +     PVTQF+   +E+ GL+KFDFLGL
Sbjct: 540  LTRNAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGL 599

Query: 577  KTLTLLQKSLDFLAQRGVKVDLSLI-----PFDDHETY-HLLTTKGTLGIFQLESSGMRQ 630
            +TLT++  ++  + +R  +  +  +     P DD  TY  +  +  T  +FQ ESSGMR+
Sbjct: 600  RTLTIIDWAVKAINKRHARACIDPVDITALPLDDIPTYKDIFASGNTSAVFQFESSGMRR 659

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
             L+  +PD  ED+IALVSLYRPGP+D I  +  RK+G ++ +   P    +LK+T G+++
Sbjct: 660  LLKDARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMV 719

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K G+    A  IF
Sbjct: 720  YQEQVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIF 779

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            +L+ KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  +AR
Sbjct: 780  DLMEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEAR 839

Query: 811  QFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDF 868
              N++++ P++N     F+    + I Y L AIKGVG +    I++      P+ SL +F
Sbjct: 840  NLNLKVLRPNINHSVYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLNF 899

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
            C+RV S KLNRR LE+++ AGALD  G +R  ++  L  + K  + + + R +    +F 
Sbjct: 900  CTRVASAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNPLFG 959

Query: 929  H-EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE-- 985
            + +  T + ++ L +      +     E+  LG YFSGHP D Y+  ++++         
Sbjct: 960  NADPSTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSA 1019

Query: 986  ----SVATIRGN----------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                  +  RGN          N  LA +VVS ++    KG    +V   +     E + 
Sbjct: 1020 LERILGSQQRGNGEKRTWHPEVNTILAGLVVSVRR----KGDSQVFVQLEDGRGRIECSA 1075

Query: 1032 F 1032
            F
Sbjct: 1076 F 1076


>gi|301056108|ref|YP_003794319.1| DNA polymerase III subunit alpha [Bacillus anthracis CI]
 gi|300378277|gb|ADK07181.1| DNA polymerase III subunit alpha [Bacillus cereus biovar anthracis
            str. CI]
          Length = 1108

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1027 (35%), Positives = 582/1027 (56%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFG-NFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+          G   + +  RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  MYLRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|77747494|ref|NP_297497.2| DNA polymerase III subunit alpha [Xylella fastidiosa 9a5c]
 gi|14194684|sp|Q9PGU4|DPO3A_XYLFA RecName: Full=DNA polymerase III subunit alpha
          Length = 1193

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/1078 (37%), Positives = 617/1078 (57%), Gaps = 74/1078 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNL 52
             + SFVHL +H+ +SL +  + +                +L +      PA+A+TD NNL
Sbjct: 2    STSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNL 61

Query: 53   FSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
            F+ ++F + A   GI+PI G  L I   ++                + LL     GY  L
Sbjct: 62   FALIKFYKAAETVGIKPISGADLLIAEPEHTPWG------------MTLLCRDHAGYLNL 109

Query: 113  IELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
             +L+SR +L     +  V +   W+++   + L  L G       + F    + +AE++L
Sbjct: 110  SQLISRGWLEGHRPEGGVAVHPDWVRD-HHKNLFALIG-RHSLAGQLFAKGRADLAEQQL 167

Query: 172  LTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
              ++ +FG+ L++ L R     +       +Q+A    +P++A+N+  FL   D+ AH+ 
Sbjct: 168  ADWQHVFGNGLHLELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEA 227

Query: 231  LMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
             + +A   ++    RPR  +   YL++  EM ++F+D+P+AL+NT  +A+RC+  +++  
Sbjct: 228  RVCIASGRMLDDPKRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMRLGT 287

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              LP +         +  ++ +R ++  GLE RL +  +A G   +DY  RL+FEL+ I 
Sbjct: 288  YFLPNYPVPN----DETLDSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTII 343

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +M FSGYFLIVADFIQW K+  IP+GPGRGSGAGS+ A+ L ITD+DPL ++LLFERFLN
Sbjct: 344  KMGFSGYFLIVADFIQWGKQQGIPIGPGRGSGAGSLVAWTLLITDLDPLPYNLLFERFLN 403

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPDFDIDFC +RRDEVI YV  KYG ERV+QIIT+G++ AKA +RDVGR L  PY
Sbjct: 404  PERVSMPDFDIDFCMERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPY 463

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADD------SRFREARLADPSVDRLLEISQKLEGLYR 523
              VD + KLIPN     +       +      +   +   A+  V  LL ++++LE L R
Sbjct: 464  GLVDSIAKLIPNTLGITLKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTR 523

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +A  HA G+VI   PL++  P++ +   +     PVTQF+   +E+ GL+KFDFLGL+TL
Sbjct: 524  NAGKHAGGVVIAPNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTL 583

Query: 580  TLLQKSLDFLAQRGVKVDLSLI-----PFDDHETY-HLLTTKGTLGIFQLESSGMRQALE 633
            T++  ++  + +R  +  +  +     P DD  TY  +  +  T  +FQ ESSGMR+ L+
Sbjct: 584  TIIDWAVKAINKRHARACIDPVDITALPLDDIPTYKDIFASGNTSAVFQFESSGMRRLLK 643

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +PD  ED+IALVSLYRPGP+D I  +  RK+G ++ +   P    +LK+T G+++YQE
Sbjct: 644  DARPDRFEDLIALVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQE 703

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K G+    A  IF+L+
Sbjct: 704  QVMQMAQIVGGYSLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLM 763

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ +MDN +K+  F  +AR  N
Sbjct: 764  EKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNLN 823

Query: 814  IQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
            ++++ P++N     F+    + I Y L AIKGVG +    I++      P+ SL +FC+R
Sbjct: 824  LKVLRPNINHSVYMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLNFCTR 883

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-E 930
            V S KLNRR LE+++ AGALD  G +R  ++  L  + K  + + + R +    +F + +
Sbjct: 884  VASAKLNRRALEAMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNPLFGNAD 943

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE----- 985
              T + ++ L +      +     E+  LG YFSGHP D Y+  ++++            
Sbjct: 944  PSTPAIQLDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALER 1003

Query: 986  -SVATIRGN----------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +  RGN          N  LA +VVS ++    KG    +V   +     E + F
Sbjct: 1004 ILGSQQRGNGEKRTWHPEVNTILAGLVVSVRR----KGDSQVFVQLEDGRGRIECSAF 1057


>gi|196032965|ref|ZP_03100378.1| DNA polymerase III, alpha subunit [Bacillus cereus W]
 gi|196040926|ref|ZP_03108224.1| DNA polymerase III, alpha subunit [Bacillus cereus NVH0597-99]
 gi|218905831|ref|YP_002453665.1| DNA polymerase III, alpha subunit [Bacillus cereus AH820]
 gi|228948329|ref|ZP_04110612.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            monterrey BGSC 4AJ1]
 gi|195994394|gb|EDX58349.1| DNA polymerase III, alpha subunit [Bacillus cereus W]
 gi|196028380|gb|EDX66989.1| DNA polymerase III, alpha subunit [Bacillus cereus NVH0597-99]
 gi|218538695|gb|ACK91093.1| DNA polymerase III, alpha subunit [Bacillus cereus AH820]
 gi|228811316|gb|EEM57654.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            monterrey BGSC 4AJ1]
          Length = 1108

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1027 (35%), Positives = 582/1027 (56%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFG-NFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+          G   + +  RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  MYLRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|241761529|ref|ZP_04759616.1| DNA polymerase III, alpha subunit [Zymomonas mobilis subsp. mobilis
            ATCC 10988]
 gi|241373837|gb|EER63370.1| DNA polymerase III, alpha subunit [Zymomonas mobilis subsp. mobilis
            ATCC 10988]
          Length = 1174

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/1047 (43%), Positives = 638/1047 (60%), Gaps = 32/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P FV L++ S +++LEGA+   +I         PA  I D N L+  + FS     
Sbjct: 1    MPYTP-FVPLRIFSGFTMLEGAIEPKDITQHAKKMGFPAAGICDRNGLYGVMTFSDSGKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPIIG  L +         +  +        + L     +GY  L  LVS  +L   
Sbjct: 60   DGVQPIIGSLLAVARPLRGGEASGQELKIDW---LSLYAQDEDGYNNLCALVSHAHLGRP 116

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    + + +L++  ++GL+ LTGG  G + R         AE  L   +K+F DRLY+
Sbjct: 117  LELPPHVSMEFLEQ-HSQGLLALTGGKEGALARLMAEEQQSEAEAYLTLLQKIFPDRLYI 175

Query: 185  NLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R          + ++ LAY  ++PLVATN   FL  + + AHD ++ +A S  V   
Sbjct: 176  ELSRRSEEIEEAAEEGLIDLAYDRDIPLVATNPVCFLEADFHPAHDAMLCIADSAYVDSP 235

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DR   +P+ ++K+  EM  +F D+PEA++N++ +A+RC+    V      + I       
Sbjct: 236  DRRHSSPEAWMKSGEEMARLFEDIPEAIQNSLVVAQRCAVAAPV-----RKPILPSLAGD 290

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            ++ E   LR  A AGLE RLA          + Y +RL +ELN+I  M F GYFLIVADF
Sbjct: 291  REGETLMLRKDAWAGLEARLAAMTTP--VDRKAYEERLQYELNIIENMGFPGYFLIVADF 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N IPVGPGRGSGAGSV A+ALTIT++DPLR  LLFERFLNP+R+SMPDFDIDFC
Sbjct: 349  IKWAKSNQIPVGPGRGSGAGSVVAWALTITNLDPLRLGLLFERFLNPERVSMPDFDIDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            + RR EVI YVQ+KYG + VAQIITFG ++A+A L+D GR LQM Y QVDRL KL+P+  
Sbjct: 409  ETRRSEVISYVQHKYGLDHVAQIITFGRMKARAVLKDTGRVLQMSYGQVDRLAKLVPSQA 468

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            + P +  +A+        A   +  V RLL+++ KLEGL RH+STHAAG+VIGDRPL QL
Sbjct: 469  SDPWTLDRALNGVPEIASAYENEEDVHRLLDLAMKLEGLPRHSSTHAAGVVIGDRPLHQL 528

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD RSD PVTQF+MK++EK GL+KFDFLGLKTL++L K++  L  RGV+VDL  IP
Sbjct: 529  VPLYRDPRSDFPVTQFDMKYVEKTGLVKFDFLGLKTLSVLNKAVQMLKARGVEVDLDHIP 588

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD   + LL    T+G+FQLES GMR+ L  ++P   EDIIALV+LYRPGP+DNI  + 
Sbjct: 589  LDDEAVFELLKQGDTVGVFQLESEGMRRTLAAVKPTRFEDIIALVALYRPGPMDNIPSFG 648

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RKNG E+IV  HPL++P+LKET G+I+YQEQVMQ AQ+L+GYSL EAD+LRRAMGKKI+
Sbjct: 649  ARKNGGEEIVYPHPLLEPVLKETYGIIVYQEQVMQAAQVLAGYSLGEADLLRRAMGKKIQ 708

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             EMD Q+ RF+ G+ K+ I++  A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K H
Sbjct: 709  SEMDAQRSRFVEGSKKHDITENQANQLFDLIDKFAGYGFNKSHAAAYALVAYQTAWLKAH 768

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            Y  EF AA+M  +M   +K++ F  D R+  ++ +PP +N    DF V D  + Y+L A+
Sbjct: 769  YRAEFYAAAMCFDMALTDKLQVFVDDMRRSGLRYLPPDINRSQSDFTVEDGCVRYALGAL 828

Query: 843  KGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KGVG      I +    +  F SL+DF +R++ + LNRR LESL  AGA D  G  R  +
Sbjct: 829  KGVGEKAMDDICQEREKNGAFKSLDDFANRINPEHLNRRQLESLASAGAFDSLGVDRCAV 888

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             QS + I   A  + + R +    +F  E+      I L +  + + + R   E+   GF
Sbjct: 889  KQSSEMIIGTAANIHRMRKSGQGGLFGMEEMAM-PSIKLPEDKIWSLTERMNAEKEAFGF 947

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATI--------------RGNNI--RLAAMVVSKQ 1005
            +FS HP+D Y+ +L  + I+   +                   R   I  ++AAM+   +
Sbjct: 948  FFSSHPIDNYRSLLSGLRIRSRADINRLAPPSYPQDDENPQDYRKKRIATQMAAMIEDVR 1007

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + + +G R   V  S+ + ++ A+ F
Sbjct: 1008 WRDSARGRRYMMVAASDASGQFFASCF 1034


>gi|254524078|ref|ZP_05136133.1| DNA polymerase III, alpha subunit subfamily, putative
            [Stenotrophomonas sp. SKA14]
 gi|219721669|gb|EED40194.1| DNA polymerase III, alpha subunit subfamily, putative
            [Stenotrophomonas sp. SKA14]
          Length = 1196

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/1082 (37%), Positives = 603/1082 (55%), Gaps = 77/1082 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTN 50
            +  S  FVHL VH+ +SL +  + +                +L +      PA+A+TD N
Sbjct: 1    MSNS-RFVHLHVHTEFSLADSTIRVPAKPDQADPKKAKQANLLSRSVELGLPALAVTDLN 59

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            NLF+ ++F + A   GI+PI G  + I  +                  + LL    EGY 
Sbjct: 60   NLFALVKFYKAAEGVGIKPIAGADVLIAEEG------------QDPWRMTLLCRDREGYL 107

Query: 111  RLIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
             L  L++R ++     +  V +   WL + G   L  L  G      R       ++AE+
Sbjct: 108  SLSRLLTRAWMEGHRPEGGVAVHPDWL-KAGNANLFAL-AGRQSLAGRLALDGKHELAEQ 165

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAY-THELPLVATNNSLFLSEEDYEAH 228
            +L  ++++FGD L++ L R         +Q   +A     LP+VA+N+  FLS  ++ AH
Sbjct: 166  QLADWQRVFGDGLHLELTRTGREGEETFNQFALMAAGQRGLPVVASNDVRFLSPSNFSAH 225

Query: 229  DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            +  + ++   V+    RPR  +   YLK+  EM ++F+D+P+A++NT+ +A RC+  +++
Sbjct: 226  EARVCISTGRVLDDPKRPREYSDQQYLKSAEEMCALFADIPDAIDNTLALAERCNIEMRL 285

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                LP +   +     +  +  ++  +  GLE RL +  +A G   ++Y +RL+FELN 
Sbjct: 286  GTYFLPNYPVPD----DETLDTWIQKMSRDGLEERLEKNPLAPGKTREEYFERLEFELNT 341

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I +M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERF
Sbjct: 342  IIKMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALKITDLDPLPYNLLFERF 401

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L  
Sbjct: 402  LNPERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDSGRVLGF 461

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIA---------DDSRFREARLADPSVDRLLEISQKL 518
            PY  VD + KLIPN     +                     +    +  V  L++++ +L
Sbjct: 462  PYGLVDGVSKLIPNILGIHLKDALGKGKEGPGSEMASPELIQRYETEDDVRDLIDLALQL 521

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFL 574
            E L R+A  HA G+VIG  PLS+  P+Y +   +     PVTQF+   +E+ GL+KFDFL
Sbjct: 522  EDLTRNAGKHAGGVVIGPEPLSEFCPLYAEHDENGLGKNPVTQFDKNDVEEVGLVKFDFL 581

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSL-----IPFDDHETY-HLLTTKGTLGIFQLESSGM 628
            GL+TLT++  ++  + +R  +  +       IP DD  TY  +     T  +FQ ESSGM
Sbjct: 582  GLRTLTIIDWAVKAINKRHERAGIPPVDIAAIPLDDTPTYKDIFANGNTGAVFQFESSGM 641

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            R+ L+  +PD  ED+IALVSLYRPGP+D I  +N RK+G+E+I+   P  + +LK+T G+
Sbjct: 642  RRLLKDARPDRFEDLIALVSLYRPGPMDLIPSFNARKHGQEEIIYPDPRTEAILKDTYGI 701

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++YQEQVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K+G+ +  A  
Sbjct: 702  MVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKDGVDEAKADA 761

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            IF+L+ KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ ++DN +K+  F  +
Sbjct: 762  IFDLMEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDLDNTDKVVGFLDE 821

Query: 809  ARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLE 866
             R   + ++PP VN     F+ V  + I Y L AIKGVG      +++       +  L 
Sbjct: 822  VRNLGLTVLPPKVNQSAFMFEAVTPDTIQYGLGAIKGVGQGACEAVVDERLKGGEYKDLL 881

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DFC+RV S KLNRR LE+++  GALD  G++R  L+  L  + K    + + R +   ++
Sbjct: 882  DFCTRVGSAKLNRRTLEAMINCGALDELGHNRASLMLQLPEVIKATDQMARERASGQNSL 941

Query: 927  FAH-EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM------- 978
            F   +    + ++ L +        R   E+  LGFY SGHP D ++  +R +       
Sbjct: 942  FGGPDPSATTIQLDLPEAEEWPLLQRLNGERDTLGFYLSGHPFDPWRDDVRDLVGNDLGS 1001

Query: 979  --GIKGYEESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
               I        +             LA  VV  ++    KG    ++   +     E +
Sbjct: 1002 VEKIWSANSGGGSGGEKRWRPEVQTVLAGQVVGVRR----KGESQIFIQLEDGRGRVECS 1057

Query: 1031 FF 1032
             F
Sbjct: 1058 AF 1059


>gi|30264675|ref|NP_847052.1| DNA polymerase III DnaE [Bacillus anthracis str. Ames]
 gi|47530144|ref|YP_021493.1| DNA polymerase III DnaE [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187493|ref|YP_030746.1| DNA polymerase III DnaE [Bacillus anthracis str. Sterne]
 gi|65321971|ref|ZP_00394930.1| COG0587: DNA polymerase III, alpha subunit [Bacillus anthracis str.
            A2012]
 gi|165869605|ref|ZP_02214263.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0488]
 gi|167634005|ref|ZP_02392328.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0442]
 gi|167638118|ref|ZP_02396396.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0193]
 gi|170685920|ref|ZP_02877143.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0465]
 gi|170705551|ref|ZP_02896015.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0389]
 gi|177651072|ref|ZP_02933903.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0174]
 gi|190569023|ref|ZP_03021923.1| DNA polymerase III, alpha subunit [Bacillus anthracis Tsiankovskii-I]
 gi|227817389|ref|YP_002817398.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. CDC 684]
 gi|229600791|ref|YP_002868883.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0248]
 gi|254687412|ref|ZP_05151268.1| DNA polymerase III DnaE [Bacillus anthracis str. CNEVA-9066]
 gi|254724975|ref|ZP_05186758.1| DNA polymerase III DnaE [Bacillus anthracis str. A1055]
 gi|254736712|ref|ZP_05194418.1| DNA polymerase III DnaE [Bacillus anthracis str. Western North
            America USA6153]
 gi|254741749|ref|ZP_05199436.1| DNA polymerase III DnaE [Bacillus anthracis str. Kruger B]
 gi|254754653|ref|ZP_05206688.1| DNA polymerase III DnaE [Bacillus anthracis str. Vollum]
 gi|254757485|ref|ZP_05209512.1| DNA polymerase III DnaE [Bacillus anthracis str. Australia 94]
 gi|30259350|gb|AAP28538.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. Ames]
 gi|47505292|gb|AAT33968.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. 'Ames
            Ancestor']
 gi|49181420|gb|AAT56796.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. Sterne]
 gi|164714434|gb|EDR19953.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0488]
 gi|167513935|gb|EDR89303.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0193]
 gi|167530806|gb|EDR93508.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0442]
 gi|170129676|gb|EDS98539.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0389]
 gi|170670384|gb|EDT21124.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0465]
 gi|172082898|gb|EDT67960.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0174]
 gi|190559805|gb|EDV13790.1| DNA polymerase III, alpha subunit [Bacillus anthracis Tsiankovskii-I]
 gi|227004404|gb|ACP14147.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. CDC 684]
 gi|229265199|gb|ACQ46836.1| DNA polymerase III, alpha subunit [Bacillus anthracis str. A0248]
          Length = 1108

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1027 (35%), Positives = 582/1027 (56%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFG-NFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+          G   + +  RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  MYLRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDAK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|322378547|ref|ZP_08052994.1| DNA polymerase III subunit alpha [Helicobacter suis HS1]
 gi|321149024|gb|EFX43477.1| DNA polymerase III subunit alpha [Helicobacter suis HS1]
          Length = 1212

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1056 (34%), Positives = 583/1056 (55%), Gaps = 45/1056 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL +H+ YSLL+GA  +  +  KI      +++++D  N+F A++F       GI+PI
Sbjct: 19   FTHLHLHTEYSLLDGANKIKVLAKKIKELGMESVSMSDHGNMFGAIDFYTCMKKEGIKPI 78

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  I    NL     G         + L     EGY  L+ L S+ +L +      R
Sbjct: 79   IGMEAYIHNSTNL-----GDKQSKQRFHLCLYAKDLEGYHNLMYLSSQAFL-EGFYYFPR 132

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180
            I    L+E   +GLI  +    G I+                    A++    ++ +FG+
Sbjct: 133  INKKLLKER-CKGLICSSACLQGEINWHLNTLSEKNKKYGAKGYDEAKRVAEEYQSIFGE 191

Query: 181  RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              Y+ + RH   ++   E Q+++L+    + L+ATN++ + ++ED  A ++ M VA    
Sbjct: 192  DFYMEIMRHGIANQLFIEDQILKLSLETGIKLIATNDTHYTNQEDASAQEIAMCVAMGKT 251

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++   R R +  + Y+K+ ++M  +F+D+PEALENT EIA++C   + +     P    +
Sbjct: 252  LNDPTRLRHSVHEFYIKSPAQMAKLFADIPEALENTQEIAQKCQLEIDLKDESNPPTPPR 311

Query: 299  ECDDIQ---------KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                 +         KE+     +KA  GL+ RL    I +      Y +RL++E+ VI 
Sbjct: 312  FKFTQEYALSEGLDIKEDAPYFAHKAREGLKKRLEMVDIKEHAR---YEERLEYEIKVIT 368

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
             M+F+GY LIV DF+++A++NNIPVGPGRGS AGS+ A+ L ITDIDPL++ LLFERFLN
Sbjct: 369  DMRFAGYMLIVWDFVRYARENNIPVGPGRGSAAGSLVAFCLQITDIDPLKYDLLFERFLN 428

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R+SMPD D DFCQ RR E++ Y+  KYG   VAQ+ITF  + AK  +RDV R L MPY
Sbjct: 429  PERVSMPDIDTDFCQRRRGEMLDYMIAKYGKYNVAQVITFNKMLAKGVIRDVARVLDMPY 488

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
             + D + KLIPN     +  +A   + + +           + + S +LE L R A  HA
Sbjct: 489  KEADEMAKLIPNRLGITL-QEAYDLEPKIQTLLQTSTLAKEVWDFSLRLENLNRSAGKHA 547

Query: 530  AGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            A +V+  +R L    P+Y   R+   VTQ++MK++E   LIKFDFLGLKTLT++  +L+ 
Sbjct: 548  AALVVDSERELWYKTPLYTSERTGGIVTQYSMKYLEAIDLIKFDFLGLKTLTVIHDALNI 607

Query: 589  LAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            + +    K+D   +  DD + Y  +    T+GIFQ+ES   +   + ++P   EDIIA++
Sbjct: 608  IKKYSHEKIDFLRVDMDDPKVYATIQEGNTVGIFQIESGMFQTLNKRLRPSRFEDIIAII 667

Query: 648  SLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +L RPGP+++ +   + NRK+G   I  +   ++P+L+ T G IIYQEQVMQI Q ++G+
Sbjct: 668  ALGRPGPMESGMVDDFVNRKHGSAPITYMFDALEPILRPTYGTIIYQEQVMQIVQTIAGF 727

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            SL EAD++RRAMGKK  + M   + +F+ GA K G     A  +F+L+ KFA YGFNKSH
Sbjct: 728  SLGEADLIRRAMGKKDAQIMADNRAKFVEGAEKKGFDCNKAGELFDLIVKFAGYGFNKSH 787

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAYA++++QTA++KTHY   F+AA ++ E  +++ +  + ++A    I+I  P VN   
Sbjct: 788  SAAYAMLTFQTAYLKTHYKHAFMAAMLSSECRHIDSVAYYVEEANSMGIEIKRPHVNVSD 847

Query: 826  VDFKVGDNR----IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRR 880
            V F+V D      I + L AIKG G      ++E       F  LED  S++D  K ++R
Sbjct: 848  VQFRVQDENGEKVIIFGLEAIKGAGEGPLGMLVELREKYGKFKDLEDLISKIDFSKFSKR 907

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KGTFSDKI 938
            +LE L+ +G+LD  GY+R  +L++LD I +  +  +K+       +FA+   +      +
Sbjct: 908  ILEPLIKSGSLDNLGYNRKTMLENLDLICEEGRRKDKSNAQMSGGLFANLSTEDQEKAHL 967

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRL 997
            TL+ +   + S   + E   +G YFSGHPLD +K  ++ +  +    + +    G+    
Sbjct: 968  TLKIYDEYDDSTLLDFEYECMGLYFSGHPLDAFKDQIKALKNVAKSRDILRLEIGSQATF 1027

Query: 998  AAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
               ++  ++K  +K G   G  +  + +  ++   F
Sbjct: 1028 IGKILELKRKIGKKSGKPYGEASIVDLSGRFDLLLF 1063


>gi|49478699|ref|YP_038648.1| DNA polymerase III DnaE [Bacillus thuringiensis serovar konkukian
            str. 97-27]
 gi|49330255|gb|AAT60901.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
            konkukian str. 97-27]
          Length = 1108

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1027 (35%), Positives = 581/1027 (56%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +F D  Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMF-DNFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS   EA+ NTVEIA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHAEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+          G   + +  RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  MYLRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|228967702|ref|ZP_04128721.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            sotto str. T04001]
 gi|228791994|gb|EEM39577.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            sotto str. T04001]
          Length = 1108

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1027 (36%), Positives = 589/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL           G   + + +RLD ELNVI+RM FS YFLIV DF+++A 
Sbjct: 282  IYLRRVCEEGLRK-------RYGAPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ ++LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYNLLFERFLNPERVTLPDIDIDFPDVRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+  
Sbjct: 813  ATVTALLEERKKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|149184684|ref|ZP_01863002.1| DNA polymerase III alpha subunit [Erythrobacter sp. SD-21]
 gi|148832004|gb|EDL50437.1| DNA polymerase III alpha subunit [Erythrobacter sp. SD-21]
          Length = 1157

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 448/1040 (43%), Positives = 618/1040 (59%), Gaps = 30/1040 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P FV L+V S+YS+LEGA+    +         PAIA+ D N L+ A+ F+    A
Sbjct: 1    MPYKP-FVPLRVLSAYSMLEGAIDPKAMAKLAKERGFPAIAMADRNGLYGAVMFANACKA 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GIQPI G  L +   +  +  +           + L      GY  L  LVS+ +L   
Sbjct: 60   EGIQPITGTLLGVARDEEGRTVDY----------LPLYAQDEAGYDNLCHLVSKAHLERP 109

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    I +  L E  T+GLI LTG S G + R      +  A   L   + LF  RLYV
Sbjct: 110  LEFEPHIRMEDL-EGRTDGLIALTGASEGGVTRLLAEGQTSHATAMLDKLEALFPGRLYV 168

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     +   E+ ++ LAY  +LPLVATN + F     Y+AHD ++ +A+ST +  +
Sbjct: 169  ELARRGNPVEEAAEAALIDLAYERDLPLVATNPANFAEPHMYKAHDAMLCIANSTHIDNE 228

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            +R +  P+ Y+K    M   F DLPEA  NT+ +A+RC++            I       
Sbjct: 229  ERAKSNPEAYVKTAHMMEEAFDDLPEATTNTLVVAQRCAYAPP-----YRDPILPSLAGD 283

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             + E   L   A  GLE RL           + Y  RLD+E+ +I +M F GYFLIVADF
Sbjct: 284  LEGEARMLEADARKGLEKRLEPYGEMTEEARKVYFDRLDYEVGIINQMGFPGYFLIVADF 343

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK ++IPVGPGRGSGAGS+ A+ALTITD+DP++  LLFERFLNP+R+SMPDFDIDFC
Sbjct: 344  IKWAKDHDIPVGPGRGSGAGSLVAWALTITDLDPIQLGLLFERFLNPERVSMPDFDIDFC 403

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            + RR EVIRYVQ KYGH+ VAQIITFG L+A+A LRD GR LQM Y  VDR+CK++PN P
Sbjct: 404  ETRRGEVIRYVQAKYGHDHVAQIITFGKLKARAVLRDTGRILQMSYGHVDRICKMVPNHP 463

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              P +  +A+   + F+     D  V RL++++ KLEG  R++STHAAG+VIGDRPL+QL
Sbjct: 464  TDPWTLPRALNGAADFKAEYDNDNEVKRLIDLAMKLEGFPRNSSTHAAGVVIGDRPLAQL 523

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD RSD+PVTQ++MK +E +GL+KFDFLGLKTL++L+K+ D L +R + +DLS + 
Sbjct: 524  VPLYRDPRSDMPVTQYDMKNVESSGLVKFDFLGLKTLSVLKKATDLLKKRDITIDLSQLE 583

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD   Y L+    T+G+FQLES GMR+ L  ++P    DIIALVSLYRPGP+DNI ++ 
Sbjct: 584  LDDPAVYELMKAGNTVGVFQLESEGMRRTLTAVKPTNFGDIIALVSLYRPGPMDNIPLFG 643

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G+  I   H  ++ +L ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKK++
Sbjct: 644  KRKAGEVPIEYPHEKLEGILAETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKVQ 703

Query: 723  EEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             EMD Q+ERF++G    +GI K  A  +F+L+ KFA YGFNKSHAAAYA+++YQTAWMK 
Sbjct: 704  AEMDIQRERFVAGCKDVSGIEKAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWMKA 763

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----DNRIYY 837
            HYP EF AASM  +M   EK+  F  DAR+  I + PP +N    +F V        + Y
Sbjct: 764  HYPEEFFAASMCFDMHQSEKLTIFVDDARRQGIAVEPPCLNKSEAEFTVEQTDTGYAVRY 823

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            +LA I+ VG     +I+        FDSL+D   R+    +N R LE+L  AGALD    
Sbjct: 824  ALAGIRNVGEKAMENIVAEREVSGQFDSLQDLFERIPKGSMNSRQLEALACAGALDSLEP 883

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R ++ ++ D +   A   ++ RT+   ++F  +     + + L +      + R   E+
Sbjct: 884  NRSKVFENADMLLAVADAADRERTSGQASMFGGDDAP-GETLRLREVEDWPRAERMARER 942

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRGNN--IRLAAMVVSKQQKKTRKG 1012
               GFYFS HP+  +K I    G + Y   ++     G      +AAMV    +  TR+G
Sbjct: 943  ENFGFYFSNHPVAAWKDIASANGARTYASLMSGGAPAGGRSNAVMAAMVEKVNKGTTRRG 1002

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
                   FS+   ++ A  F
Sbjct: 1003 KPFIRADFSDATGQFSAACF 1022


>gi|47565015|ref|ZP_00236058.1| DNA polymerase III, alpha subunit [Bacillus cereus G9241]
 gi|47557801|gb|EAL16126.1| DNA polymerase III, alpha subunit [Bacillus cereus G9241]
          Length = 1108

 Score =  684 bits (1765), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1027 (35%), Positives = 583/1027 (56%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMFGK-FYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----ANETND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+          G   + +  RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  TYLRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++ + PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSEEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|229112070|ref|ZP_04241613.1| DNA polymerase III subunit alpha [Bacillus cereus Rock1-15]
 gi|228671393|gb|EEL26694.1| DNA polymerase III subunit alpha [Bacillus cereus Rock1-15]
          Length = 1108

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1027 (36%), Positives = 589/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL           G   + + +RLD ELNVI+RM FS YFLIV DF+++A 
Sbjct: 282  IYLRRVCEEGLRK-------RYGEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E   +K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+  
Sbjct: 813  ATVTALLEEREEKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|218899758|ref|YP_002448169.1| DNA polymerase III, alpha subunit [Bacillus cereus G9842]
 gi|218545476|gb|ACK97870.1| DNA polymerase III, alpha subunit [Bacillus cereus G9842]
          Length = 1108

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1027 (35%), Positives = 588/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL           G   + + +RL+ ELNVI+RM FS YFLIV DF+++A 
Sbjct: 282  IYLRRVCEEGLRK-------RYGAPKEVHIKRLNHELNVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+  
Sbjct: 813  ATVTALLEERKKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|308448573|ref|XP_003087689.1| hypothetical protein CRE_05365 [Caenorhabditis remanei]
 gi|308253615|gb|EFO97567.1| hypothetical protein CRE_05365 [Caenorhabditis remanei]
          Length = 1015

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1036 (37%), Positives = 583/1036 (56%), Gaps = 47/1036 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ +S+ E  + + +++   A+D+ PA+AITD +NL +A++F  K+   GI+PI
Sbjct: 3    FVHLGIHTEFSITESIVRIPDLIKAAASDEMPALAITDLSNLHAAVKFYNKSLGKGIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  + ++  ++                  LL  T +G++ L E+VSR ++  Q      
Sbjct: 63   FGSVIRLNDANHKA---------------TLLAMTNKGWRGLTEIVSRGFIEGQQLSIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   W+ E  ++ +I+L G     +         + AE  L  + + FG+R+Y+ L R  
Sbjct: 108  VQKDWVLE-QSQDIIVLLG-LHSDVGEMLCAAYPEKAEPLLEQWIEKFGNRVYLALTRTG 165

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
               +     + V+LA  + + +VA N+  F+  EDYEAH+  + +A   V+    RP+  
Sbjct: 166  RPLEESFNEEAVKLAAKYNIGVVAHNDVHFVRPEDYEAHEARVCIADGYVLGDSKRPKHY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ Y K  +EM+ +F+D+P A+ENT++IA+RC+  L++    LP +   E   I     
Sbjct: 226  SPEQYFKTSAEMIKLFADIPSAIENTLQIAKRCTVSLRLGFHDLPDYPIPEGHTIH---- 281

Query: 309  NELRNKAVAGLEV------RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +   + +  GLE        +           + Y +RL +EL +I +M F GYFLIV D
Sbjct: 282  SYFEHLSEIGLEERLDFLYPVETRDEDWAEIRKPYDERLAYELGIINKMDFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFDIDF
Sbjct: 342  FIQWSKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDIDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD+VI YV   YG + V+QI TFG++ AK A+RDV R L   Y   DR+ K+IP  
Sbjct: 402  CIAGRDKVIDYVARHYGRDAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMIPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537
            P      ++I  + + ++      + D      + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGLTLEESIEAEPQLKDIVTNPSNPDYDDAAEIWEMALKLEGITRNTGKHAGGVVIAPT 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596
             ++    +  +      V QF+   +E AGL+KFDFLGL+ LT+++ ++  + +R     
Sbjct: 522  KITDYSAILCEADGTGRVAQFDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKRIQSDK 581

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              ++S IP DD ++Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  PLNISNIPLDDPKSYAVFADANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +   +    +   +HPL++ +L+ T G+++YQEQVMQ AQ  +GY+L  AD+LR
Sbjct: 642  MDLIPDFI-HRMHGGEFEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ+  FI GA+K  I +  A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKVEEMVKQRATFIEGAAKKDIDEGTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-N 833
            QTAW+K HYP EF+AA M+ EM N + I     D R  N+ ++PPSVN     F   D N
Sbjct: 761  QTAWLKAHYPSEFMAAVMSSEMQNTDNIVFLIDDCRINNLVVLPPSVNMSFYQFYASDVN 820

Query: 834  RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L AIKGVG    + ++++   D PF  L DFC RVD KK+N+R LE+L+ AGALD
Sbjct: 821  TIIYGLGAIKGVGEQAMQSVIDSREQDGPFKDLFDFCHRVDLKKINKRTLEALIRAGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A+    NR     ++F   +     +   +     +  VR 
Sbjct: 881  CLGIERSSLMAQLPEAVQAAEQARSNRETGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y +GHP+DVY+  L+        E   T RG     A +VV          
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRADLKSFIPNKINELTLTRRGVTTVFAGLVVDIAFFP---- 994

Query: 1013 SRIGWVTFSEPAKEYE 1028
            +R+   T  +     E
Sbjct: 995  NRMMI-TLDDGTARIE 1009


>gi|218235458|ref|YP_002369400.1| DNA polymerase III DnaE [Bacillus cereus B4264]
 gi|228960872|ref|ZP_04122505.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            pakistani str. T13001]
 gi|229147164|ref|ZP_04275522.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST24]
 gi|296505075|ref|YP_003666775.1| DNA polymerase III DnaE [Bacillus thuringiensis BMB171]
 gi|218163415|gb|ACK63407.1| DNA polymerase III, alpha subunit [Bacillus cereus B4264]
 gi|228636274|gb|EEK92746.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST24]
 gi|228798768|gb|EEM45748.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            pakistani str. T13001]
 gi|296326127|gb|ADH09055.1| DNA polymerase III DnaE [Bacillus thuringiensis BMB171]
          Length = 1108

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1027 (36%), Positives = 588/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL           G   + + +RLD ELNVI+RM FS YFLIV DF+++A 
Sbjct: 282  IYLRRVCEEGLRK-------RYGEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|229072106|ref|ZP_04205315.1| DNA polymerase III subunit alpha [Bacillus cereus F65185]
 gi|228711040|gb|EEL63006.1| DNA polymerase III subunit alpha [Bacillus cereus F65185]
          Length = 1108

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1027 (36%), Positives = 589/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL           G   + + +RLD ELNVI+RM FS YFLIV DF+++A 
Sbjct: 282  IYLRRVCEEGLRK-------RYGEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|182413909|ref|YP_001818975.1| DNA polymerase III, alpha subunit [Opitutus terrae PB90-1]
 gi|177841123|gb|ACB75375.1| DNA polymerase III, alpha subunit [Opitutus terrae PB90-1]
          Length = 1271

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/1122 (33%), Positives = 572/1122 (50%), Gaps = 111/1122 (9%)

Query: 5    LEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +  + P+FVHL VHS YSLL+G+  ++ +L +       AIA+TD  NL+ A+EF + A 
Sbjct: 1    MPSADPNFVHLHVHSDYSLLDGSCRIDRLLKRTNELGMKAIALTDHGNLYGAIEFYKAAK 60

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             A ++P+IGC+L +     L+   +      T+  + LL     GYQ L++LVS  +L  
Sbjct: 61   DAQVKPLIGCELYLVEHSRLEKHGRSDDDGKTIFHLGLLARNLTGYQNLLKLVSDAHLK- 119

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182
                  R  +  L +    GLI  +G  +  + +    +    A K    F ++FG +  
Sbjct: 120  GFYYKPRTDIETLAKY-AGGLIGFSGCLASLVPQHLLNDREDEARKACARFVEIFGRENY 178

Query: 183  YVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++ LQ H   ++      ++ LA   +L ++ +N+  +++  D   HD ++ +   + + 
Sbjct: 179  FIELQDHGIPEQRKIIPGLLDLAQEFKLQVICSNDVHYVNHGDAGPHDAMLCIQTGSKID 238

Query: 242  QKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             + R R +    YLK+R EM  +F ++P +L NT  +A  C   +               
Sbjct: 239  DEKRMRFSGSQFYLKSREEMAQVFREVPASLTNTQLVADMCELAIPFPKGSERYPKYPLP 298

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGY---------------------------- 332
             +I+ +    L++  VAGL  R      A                               
Sbjct: 299  PEIKTDRGGYLQDLCVAGLRRRYGVDYFAAASHPAAAERLDKLTNLPAGEKPQPPDYTGL 358

Query: 333  -HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
             H ++   R+ +EL++I    F  YFL+V DFI WAK + +PVGPGRGSGAG + AY L 
Sbjct: 359  THEEELVVRMGYELSIIRVTGFIDYFLVVWDFIAWAKSHGVPVGPGRGSGAGCLVAYLLG 418

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT++DPLRF LLFERFLNP+R+S PDFDIDFC  RR+EVI YV+ KYG + VA IIT+G+
Sbjct: 419  ITNLDPLRFKLLFERFLNPERVSPPDFDIDFCMRRREEVINYVREKYGKDCVANIITYGT 478

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            L AK  +RDV R   +P+++ DRL K+IP++    ++  AIA  +        +P   ++
Sbjct: 479  LGAKMVIRDVSRVHNLPFAEADRLAKMIPDELNITLT-DAIAKSAELSSEIARNPVAKKI 537

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
            ++ +  LEG+ R+   HAAGI+I D+PL   VP+    +      QF+M  + K GL+K 
Sbjct: 538  VDQALVLEGMVRNTGKHAAGIIITDQPLDDFVPLTL--QEGDVTVQFDMGAVTKLGLLKM 595

Query: 572  DFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            DFLGLKTLT++  ++D + +    K D+  IP DD +TY +L    T+G+FQLESSGM+ 
Sbjct: 596  DFLGLKTLTVIADAVDNVRRTADPKFDIETIPLDDPKTYAMLNAGKTVGVFQLESSGMQS 655

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
            A + +    I+DI A+ +LYRPGP+  I  Y   K     +   HPL++  L+ET G+I+
Sbjct: 656  ACKQVGVSNIDDINAICALYRPGPMQFIPDYARGKKDPSTVEYPHPLLEQSLQETYGIIV 715

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG-ISKTIAVNI 749
            YQEQVM+ A++++GY+L  AD+LRRAMGKK  E M K++ +F+ GA +   I +  A  I
Sbjct: 716  YQEQVMECAKIIAGYTLGGADMLRRAMGKKDAEAMAKERVKFVEGAKRVNAIDEKKANEI 775

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            F+LL KFA YGFNKSH+AAYA++SYQTA++K +YPV+F+AA +T E+ N EK+  F  +A
Sbjct: 776  FDLLNKFASYGFNKSHSAAYALVSYQTAFLKANYPVQFMAAVLTAELGNAEKVSHFIAEA 835

Query: 810  RQFNIQIMPPSVNTPCVDFKVG-------------------------------------- 831
                I ++ P +N     F                                         
Sbjct: 836  EAMGITVLGPDINESREMFTPVLRGASSPRAQSPESRVQSQADSELSALNSQLSAAEADR 895

Query: 832  -DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                I + LA IKGVG   A+ I+E    +  F   +DF +R+D + +N+RVLE LV  G
Sbjct: 896  AGGAIRFGLAGIKGVGELAAQKIIEERDKNGAFCDFDDFAARMDGRAVNKRVLEHLVKTG 955

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH---ENIFAHE---------------- 930
            A D  G  R  L   +D          ++R        ++FA +                
Sbjct: 956  AFDYSGAPRKPLFDGIDAALATVAARARDRAAGQHSFLDMFAEDLAPKKNGKNGSNGHGA 1015

Query: 931  ------KGTFSDKITLE-----KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                    + SD  TL+           S+ R   E+ +LGFY SGHPL+V+  +   + 
Sbjct: 1016 ATPSSRPASGSDFSTLDSQLSTSSDDFTSTERLTFEKELLGFYVSGHPLNVFAGLTEAID 1075

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTF 1020
                 E +        RL  +V    ++ ++K        T 
Sbjct: 1076 TYPITELLNQGDRTEFRLCGIVSGIAKRLSKKDNRPWASFTL 1117


>gi|262278808|ref|ZP_06056593.1| DNA polymerase subunit III [Acinetobacter calcoaceticus RUH2202]
 gi|262259159|gb|EEY77892.1| DNA polymerase subunit III [Acinetobacter calcoaceticus RUH2202]
          Length = 1187

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1039 (36%), Positives = 579/1039 (55%), Gaps = 47/1039 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +++ +S+ E  + + ++++    DQ PA+A+TD +NL +A++F       GI+P+
Sbjct: 3    FVHLGIYTEFSITESIVRIPDLVNAAVKDQMPALALTDLSNLHAAVKFYNSCLKKGIKPL 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  + +D                    + LL  +  G++ L E+VSR ++  Q      
Sbjct: 63   LGSIIRLD---------------DAQHRVTLLAMSDIGWKSLTEIVSRGFIEGQQLSIPC 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +   W+ E   + +I+L G     + +    ++ Q A   L  + + FG+R+Y+ L R  
Sbjct: 108  VQKEWVLEQHQD-IIVLLG-QHSDVGQMLCSSNPQKAAPLLEAWLEKFGNRVYLALTRTD 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  +     +  +LA  + + +VA N+  F+ +ED+EAH+  + +A   V++   RPR  
Sbjct: 166  RPGEEDFIQEAAKLAAQYNVGVVAHNDVHFVEKEDFEAHEARVCIADGYVLADNRRPRTY 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +P+ + K   EM+ +FSD+P A+ENT  IA+RC+  LQ+    LP +   +   I    +
Sbjct: 226  SPEQHFKTSDEMIELFSDIPSAIENTYHIAKRCNVKLQLGTYFLPDYPIPDGFTI----D 281

Query: 309  NELRNKAVAGLEV------RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                + +  GLE        + +         + Y +R+D+E+ +I +M F GYFLIV D
Sbjct: 282  TYFEHLSKVGLEERLNYLYPVEKRGEDWLEIRKPYDERIDYEVGIILKMGFPGYFLIVMD 341

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQWAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR+ LLFERFLNP+R+SMPDFD+DF
Sbjct: 342  FIQWAKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDF 401

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C   RD VI YV   YG E V+QI TFG++ AK A+RDV R L   Y   DR+ K++P  
Sbjct: 402  CIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTK 461

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGIVIGDR 537
            P       AI  + + ++      + D      + E++ KLEG+ R+   HA G+VI   
Sbjct: 462  PLGVDLATAIDMEPQLKDIVTNPSNPDNDDASEIWEMALKLEGVTRNTGKHAGGVVIAPG 521

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596
             ++    +  D      V Q++   +E AGL+KFDFLGL+ LT+++ ++  + +      
Sbjct: 522  KITDFSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAIQNINKNRDSND 581

Query: 597  --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              ++  +P DD + Y +     T  +FQ ES GM++ L+  +P   E+IIA VSLYRPGP
Sbjct: 582  QLNILNVPLDDAKAYSVFADANTTAVFQFESVGMKRMLKEARPSKFEEIIAFVSLYRPGP 641

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +D I  +   +        +HPL++ +L+ T G+++YQEQVMQ AQ+ +GY+L  AD+LR
Sbjct: 642  MDLIPDFI-HRMHGGDFEYLHPLLEGVLEPTYGIMVYQEQVMQAAQICAGYTLGGADLLR 700

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RAMGKK  EEM KQ++ F+ GA++ GI ++ A +IF+ + KFA YGFNKSHAAAYA+++Y
Sbjct: 701  RAMGKKKPEEMVKQRQIFLEGAAEKGIDESTANHIFDYMEKFAGYGFNKSHAAAYALVAY 760

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDN 833
             TAW+K HYP EF+AA MT EM N + +     D R  NI ++PPSVN     F    D 
Sbjct: 761  HTAWLKAHYPAEFMAAVMTSEMQNTDSVVFLIDDCRNNNIDVLPPSVNMSTYHFHASNDK 820

Query: 834  RIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I Y L AIKGVG    + +++      P+  L DFC R+D KK+N+R LE+L+ AGALD
Sbjct: 821  TIVYGLGAIKGVGEQAMQSVIDSRRQYGPYTDLFDFCHRIDLKKINKRTLEALIRAGALD 880

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C G  R  L+  L    + A+    NR +   ++F   +     +   +     +  VR 
Sbjct: 881  CLGIERASLMAQLPEAVQAAEQARSNRESGIMDLFGEVEEV--QRKPAKPVKPWSDEVRL 938

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E+  LG Y +GHP+DVY+  L+        E  AT RG     A +V+          
Sbjct: 939  KGEKDTLGLYLTGHPIDVYRQELKAFIPVKLNEITATRRGVTTVYAGLVIDVANFP---- 994

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
            +R+  V   +    +E + 
Sbjct: 995  NRVVIV-LDDGTARFEVSC 1012


>gi|228903122|ref|ZP_04067258.1| DNA polymerase III subunit alpha [Bacillus thuringiensis IBL 4222]
 gi|228856531|gb|EEN01055.1| DNA polymerase III subunit alpha [Bacillus thuringiensis IBL 4222]
          Length = 1108

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1027 (35%), Positives = 588/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL           G   + + +RL+ ELNVI+RM FS YFLIV DF+++A 
Sbjct: 282  IYLRRVCEEGLRK-------RYGAPKEVHIKRLNHELNVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAERVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+  
Sbjct: 813  ATVTALLEERKKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|255530778|ref|YP_003091150.1| DNA polymerase III subunit alpha [Pedobacter heparinus DSM 2366]
 gi|255343762|gb|ACU03088.1| DNA polymerase III, alpha subunit [Pedobacter heparinus DSM 2366]
          Length = 1476

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1105 (32%), Positives = 559/1105 (50%), Gaps = 95/1105 (8%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ------ 60
            K  +FVHL  H+ +S+L+  +++ +++   AA + PA+AITD  N+  A  F        
Sbjct: 257  KDAAFVHLHNHTQFSVLQSTINIPSLIKATAAHKMPAVAITDHANMMGAFHFVSQVLNHN 316

Query: 61   --------KACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
                     A   G       I+PIIGC+  +         ++ K        +V L   
Sbjct: 317  KGVEARNAAAIEKGETAEEQTIKPIIGCEFFVC------ENHEDKKRKDDGYQVVFLAKN 370

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
              GY  L ++ S  Y         RI  + +++   E +++L+G   G I         +
Sbjct: 371  KAGYHNLAKMSSIAYTRG-FYYIPRIDKAIVEQY-KEDILVLSGNLYGEISSKLLNMGEK 428

Query: 166  VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEED 224
             AE+ LL +K  FGD  Y+ L RH   D     + +V LA  HE+ L+ATNN+ +++++D
Sbjct: 429  QAEEALLWWKSQFGDDFYIELMRHNQEDEDIVNATLVNLAKKHEVKLIATNNTYYINKKD 488

Query: 225  YEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
              AHD+L+ V      +                ++Y K+  EM S+F+DLPEA+ N  E+
Sbjct: 489  ANAHDILLCVKEGEKQATPIGRGRGYRFGLPNQEYYFKSPEEMKSLFADLPEAISNIQEV 548

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEEN--------ELRNKAVAGLEVRLAQGAIA 329
              +          +LP+F   E   ++++EE+         LR+    G +         
Sbjct: 549  VDKIEAYKLAREVLLPKFDIPEEFLVKEDEEDGGKRGENKFLRHLTYVGAKK-------R 601

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
             G    D  +RLDFEL  I +  + GYFLIV DFI  A+  ++ VGPGRGS AGS  AY 
Sbjct: 602  YGEITDDIAERLDFELQTIEKTGYPGYFLIVQDFIAEARNLDVSVGPGRGSAAGSAVAYC 661

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L IT+IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV  KYG  +VAQIIT+
Sbjct: 662  LGITNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVIKKYGSNQVAQIITY 721

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPND------------PAHPVSLQAIADDSR 497
            G++ AK++++D  R L +P  + +++ KLIPN                 +          
Sbjct: 722  GTMAAKSSVKDTARVLDLPLFEAEKIAKLIPNMKLAKIFTLDEKSLKEALRADEYEKILE 781

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
             +    A     + LE +Q LEG  R+   HA G++I    ++  VP+     SDL VTQ
Sbjct: 782  LKALAGAKDLGAKTLEQAQILEGSLRNTGIHACGVIITPSDITNFVPVATAKDSDLYVTQ 841

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKG 616
            F+   +E AGL+K DFLGLKTLTL++ ++  +  R     D    P DD  TY L     
Sbjct: 842  FDNSVVESAGLLKMDFLGLKTLTLIKDTVKLVKSRHNIDLDPDNFPIDDERTYELFQRGE 901

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            T+GIFQ ES+GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RKNG+E+I     
Sbjct: 902  TIGIFQYESTGMQKYMKELKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGEEEIKYDLD 961

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
              +  LKET G+ +YQEQVM ++Q L+G++  EADVLR+AMGKK K+ +DK K +FI  A
Sbjct: 962  ACEEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQKDVLDKMKPKFIKQA 1021

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
            ++ G    I   I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA ++  M
Sbjct: 1022 AEKGHDAVILEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNM 1081

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIME 855
             +++++  F ++ +Q  +Q++ P VN   + F V     + + L+ IKGVG      I+E
Sbjct: 1082 SDIKQVAFFMEECKQMGVQVLGPDVNESDIKFSVNAQGEVRFGLSGIKGVGEKAVESIIE 1141

Query: 856  AS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL--------QSLD 906
                   +  L DF  R +++ +N++  ES V++GA D FGY R Q            ++
Sbjct: 1142 DRLEKGMYKDLYDFARRSNTRTVNKKAYESFVYSGAFDAFGYHRAQYFFVGINDKMNGIE 1201

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             + KYA   + N ++   ++F         +  L      +   + + E+  +G + SGH
Sbjct: 1202 KVIKYANDFQNNESSSQSSLFGGSVADLILEPALPVAPEWSLIDKLKYEKDAIGIFLSGH 1261

Query: 967  PLDVYKPILRKMG-----IKGYEESVATIRGNNIRLAAMVVSKQ--------------QK 1007
            PLD YK  L++              + T   N   + A   S +              Q+
Sbjct: 1262 PLDNYKLELKEFCQHKVKCLSLVNKIRTGDTNE-EVLAEFESIKNRELVVGGLVVVAAQR 1320

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T+ G   G + F +     E   F
Sbjct: 1321 MTKTGKPFGTLVFEDYDDSCELALF 1345


>gi|194365029|ref|YP_002027639.1| DNA polymerase III subunit alpha [Stenotrophomonas maltophilia
            R551-3]
 gi|194347833|gb|ACF50956.1| DNA polymerase III, alpha subunit [Stenotrophomonas maltophilia
            R551-3]
          Length = 1196

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1082 (37%), Positives = 606/1082 (56%), Gaps = 77/1082 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTN 50
            +  S  FVHL VH+ +SL +  + +                +L +      PA+A+TD N
Sbjct: 1    MSNS-RFVHLHVHTEFSLADSTIRVPAKPDQADPKKAKQANLLSRSVELGLPALAVTDLN 59

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            NLF+ ++F + A   GI+PI G  + I  +                  + LL    EGY 
Sbjct: 60   NLFALVKFYKAAEGVGIKPIAGADVLIAEEG------------QDPWRMTLLCRDREGYL 107

Query: 111  RLIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
             L  L++R ++     +  V I   WL + G   L  L  G      R       ++AE+
Sbjct: 108  SLSRLLTRAWMEGHRPEGGVAIHPDWL-KAGNANLFAL-AGRQSLAGRLALDGKHELAEQ 165

Query: 170  RLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAY-THELPLVATNNSLFLSEEDYEAH 228
            +L  ++++FGD L++ L R         +Q   +A     LP+VA+N+  FLS  D+ AH
Sbjct: 166  QLADWQRVFGDGLHLELTRTGREGEETFNQFALMAAGQRGLPVVASNDVRFLSPTDFSAH 225

Query: 229  DVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            +  + ++   V+    RPR  +   YLK+  EM ++F+D+P+A++NT+ +A RC+  +++
Sbjct: 226  EARVCISTGRVLDDPKRPREYSDQQYLKSAEEMCALFADIPDAIDNTLALAERCNIEMRL 285

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                LP +   +     +  +  ++  +  GLE RL +  +A G   ++Y +RL+FELN 
Sbjct: 286  GTYFLPNYPVPD----DETLDTWIQKMSRDGLEERLEKNPLAPGKTREEYFERLEFELNT 341

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I +M F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERF
Sbjct: 342  IIKMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALKITDLDPLPYNLLFERF 401

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNP+R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L  
Sbjct: 402  LNPERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDSGRVLGF 461

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIA---------DDSRFREARLADPSVDRLLEISQKL 518
            PY  VD + KLIPN     +                 +   +   ++  V  L++++ +L
Sbjct: 462  PYGLVDGVSKLIPNILGIHLKDALGKGKEGPSSEMASAELIQRYESEDDVRDLIDLALQL 521

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFL 574
            E L R+A  HA G+VIG  PLS+  P+Y +   +     PVTQF+   +E+ GL+KFDFL
Sbjct: 522  EDLTRNAGKHAGGVVIGPEPLSEFCPLYAEHDENGLGKNPVTQFDKNDVEEVGLVKFDFL 581

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSL-----IPFDDHETY-HLLTTKGTLGIFQLESSGM 628
            GL+TLT++  ++  + +R  +  +       IP DD  TY  +     T  +FQ ESSGM
Sbjct: 582  GLRTLTIIDWAVKAINKRHERAGIPPVDIAAIPLDDTPTYKDIFANGNTGAVFQFESSGM 641

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            R+ L+  +PD  ED+IALVSLYRPGP+D I  +N RK+G+E+I+   P  + +LK+T G+
Sbjct: 642  RRLLKDARPDRFEDLIALVSLYRPGPMDLIPSFNARKHGQEEIIYPDPRTEAILKDTYGI 701

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++YQEQVMQ+AQ++ GYSL  AD+LRRAMGKK+  EM K +E F  GA+K+G+ +  A  
Sbjct: 702  MVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKDGVDEAKADA 761

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            IF+L+ KFA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+++ ++DN EK+  F  +
Sbjct: 762  IFDLMEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDLDNTEKVVGFLDE 821

Query: 809  ARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLE 866
             R   + ++PP VN     F+ V  + I Y L AIKGVG      +++       +  L 
Sbjct: 822  VRNLGLTVLPPKVNHSAFMFEAVTPDTIQYGLGAIKGVGQGACEAVVDERLKGGDYKDLL 881

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DFC+RV S KLNRR LE+++  GALD  G++R  L+  L  + K  + + + R +   ++
Sbjct: 882  DFCTRVGSAKLNRRTLEAMINCGALDELGHNRASLMLQLPEVIKATEQMARERASGQNSL 941

Query: 927  FAH-EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM------- 978
            F   +  T + ++ L +        R   E+  LGFY SGHP D ++  +R +       
Sbjct: 942  FGGPDPSTVTIQLDLPEAEEWPLLQRLNGERDTLGFYLSGHPFDPWRDDVRDLVGTDLGS 1001

Query: 979  --GIKGYEESVATIRGNN------IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
               I                      LA  VV  ++    KG    ++   +     E +
Sbjct: 1002 VEKIWSANSGGGGGGEKRWRPEVQTVLAGQVVGVRR----KGESQIFIQLEDGRGRVECS 1057

Query: 1031 FF 1032
             F
Sbjct: 1058 AF 1059


>gi|15618576|ref|NP_224862.1| DNA polymerase III subunit alpha [Chlamydophila pneumoniae CWL029]
 gi|15836198|ref|NP_300722.1| DNA polymerase III subunit alpha [Chlamydophila pneumoniae J138]
 gi|16752374|ref|NP_444633.1| DNA polymerase III subunit alpha [Chlamydophila pneumoniae AR39]
 gi|33242023|ref|NP_876964.1| DNA polymerase III subunit alpha [Chlamydophila pneumoniae TW-183]
 gi|14194705|sp|Q9Z7N8|DPO3A_CHLPN RecName: Full=DNA polymerase III subunit alpha
 gi|4376966|gb|AAD18805.1| DNA Polymerase III Alpha [Chlamydophila pneumoniae CWL029]
 gi|7189016|gb|AAF37967.1| DNA polymerase III, alpha subunit [Chlamydophila pneumoniae AR39]
 gi|8979038|dbj|BAA98873.1| DNA polymerase III alpha [Chlamydophila pneumoniae J138]
 gi|33236533|gb|AAP98621.1| DNA-directed DNA polymerase III alpha chain [Chlamydophila pneumoniae
            TW-183]
          Length = 1240

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1075 (33%), Positives = 569/1075 (52%), Gaps = 60/1075 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L  HS YS+L+   S+ + + K      PA+A+TD  NL+ A++F ++    GIQPII
Sbjct: 4    IPLHCHSQYSVLDAMSSIKDFVAKGQEFGIPALALTDHGNLYGAVDFYKECTQKGIQPII 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+  I          + ++       ++LL    +GY+ L  L S  +  +      RI
Sbjct: 64   GCECYIAPGSRFDKKKEKRSR--AAHHLILLCKNEQGYRNLCILTSLAFT-EGFYYFPRI 120

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L++  +EGLI L+G  S  +  A    S +     L  F+ LF D  +  +Q H+ 
Sbjct: 121  DKDLLRQY-SEGLICLSGCLSSSVSDAALK-SPEALLLELQWFQDLFKDDYFTEVQLHKM 178

Query: 192  YDR----------------------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             +                          + V++ +    +P VATN+  +++  D++AH+
Sbjct: 179  SEESIAGFKEEWLKQEYYSLIEKQIKVNTAVLEASKRLGIPTVATNDIHYINANDWQAHE 238

Query: 230  VLMAVAHSTVVSQKDRPRV----------TPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            +L+ V     V    +             + ++Y K+ ++M  +F D+PE + NT+E+A+
Sbjct: 239  ILLNVQSGETVRIAKQNTHIPNPKRKVYRSREYYFKSPAQMAELFKDIPEVISNTLEVAK 298

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEEN--------ELRNKAVAGLEVRLAQGAIAK- 330
            RC F         P ++ +    +    E          L+  A   L  + +   +A  
Sbjct: 299  RCDFTFDFSKKHYPIYVPESLKTLNSYTEEDRYQASAVFLKQLAEEALPKKYSSEVLAHI 358

Query: 331  ------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                         ++R+D E+ +I       Y LIV D I WAK N IPVGPGRGSGAGS
Sbjct: 359  AKKFPHRDPIDIVKERMDMEMAIIIPKGMCDYLLIVWDIIHWAKANGIPVGPGRGSGAGS 418

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            V  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + VA
Sbjct: 419  VLLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDNVA 478

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            QIITFG+++AK A++DVGR L M  S+V+ + K IP    +    +A+  D    +  + 
Sbjct: 479  QIITFGTMKAKMAVKDVGRTLDMALSKVNHIAKHIP--DLNTTLSKALETDPDLHQLYIN 536

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            D    ++++++  LEG  R+   HAAG++I    L+  +P+     S +  TQ++MK +E
Sbjct: 537  DAESAQVIDMALCLEGSIRNTGVHAAGVIICGDQLTNHIPICISKDSTMITTQYSMKPVE 596

Query: 565  KAGLIKFDFLGLKTLTLLQ-KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              G++K D LGLKTLT +         + G  + ++ +P DD  T+ LL    T+GIFQ+
Sbjct: 597  SVGMLKVDLLGLKTLTSINIAMSAIEKKTGQSLAMATLPLDDATTFSLLHQGKTMGIFQM 656

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES GM++  + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++ +LK
Sbjct: 657  ESKGMQELAKNLRPDLFEEIIAMGALYRPGPMDMIPSFINRKHGKEIIEYDHPLMESILK 716

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  ++M++++E+F   A  NGI  
Sbjct: 717  ETYGIMVYQEQVMQIAGALASYSLGEGDVLRRAMGKKDFQQMEQEREKFCKRACNNGIDP 776

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +A  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EKI 
Sbjct: 777  ELATVIFDKMEKFAAYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDSDDIEKIG 836

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862
            K  ++A+   I I+PP +N     F   D  I +++ AIKG+G      I+E      P+
Sbjct: 837  KLIREAQSMGIPILPPHINVSSNHFVATDEGIRFAMGAIKGIGRGLIESIVEERDHHGPY 896

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
            +S+ DF  R D KK++++ +ESL+ AG  DCF  +R  LL S++ + +     +K   + 
Sbjct: 897  ESIRDFIQRSDLKKVSKKSIESLIDAGCFDCFDSNRDLLLASVEPLYEAIAKDKKEAASG 956

Query: 923  HENIFAHEKGTFSDKITL---EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                F        +++ +   +     +     + E+ +LG Y + HP+D  +  L ++ 
Sbjct: 957  VMTFFTLGAMDRKNEVPICLPKDIPTRSKKELLKKEKELLGIYLTEHPMDTVRDHLSRLS 1016

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFFP 1033
            +    E      G+ +R   ++     K  ++   +   +  S+    YE   +P
Sbjct: 1017 VVLAGEFENLPHGSVVRTVFIIDKVTTKISSKAQKKFAVLRVSDGIDSYELPIWP 1071


>gi|228923349|ref|ZP_04086637.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            huazhongensis BGSC 4BD1]
 gi|228836303|gb|EEM81656.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            huazhongensis BGSC 4BD1]
          Length = 1108

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1027 (36%), Positives = 588/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIKNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL           G   + + +RLD ELNVI+RM FS YFLIV DF+++A 
Sbjct: 282  IYLRRVCEEGLRK-------RYGAPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRNKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|255325317|ref|ZP_05366423.1| DNA polymerase III subunit alpha [Corynebacterium tuberculostearicum
            SK141]
 gi|255297882|gb|EET77193.1| DNA polymerase III subunit alpha [Corynebacterium tuberculostearicum
            SK141]
          Length = 1190

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/1073 (27%), Positives = 518/1073 (48%), Gaps = 51/1073 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+ SFVHL  H+ +S+L+G   ++ + D++   + PA+ +TD  N++ +  F ++   
Sbjct: 1    MAKNSSFVHLHNHTEFSMLDGMAKVDMLADEVVRQEMPAVGMTDHGNMYGSDAFYRRMTG 60

Query: 65   AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG++PIIG +  +  +                    +         ++   A G + L  
Sbjct: 61   AGVKPIIGIEAYMAPESRFNKKRVLWGTPDQKRDDVSASGAYLHQTMIAENATGLRNLFT 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   +G+I  TG  SG +           A +    +
Sbjct: 121  LSSLASYEGQLGKWPRMDAELIAE-HADGIIATTGCPSGDVQTRLRLGQFNEALEAAAMW 179

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++G D  ++ L  H    ++     ++++    +LP + TN+  ++ E    AH+ ++
Sbjct: 180  QDIYGKDNFFLELMDHGLDIEKRTRDGLLEIGRKLDLPPLVTNDCHYVLESQAPAHEAML 239

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAP 290
             V         DR +     Y    +  +    D       +NT+ IA R     ++   
Sbjct: 240  CVQTGKTFMDPDRFKFGGTGYYIKSAAQMRETWDDMIPDGCDNTLWIAERVQDYGEIWEE 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +            + L ++ + GL+ R     +      ++Y +R  +E++VI  
Sbjct: 300  HTHDRMPIADVPEGHTPTSWLTHEVMEGLQKRFPGQDV-----PEEYIERAKYEISVIEM 354

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDPL   LLFERFLNP
Sbjct: 355  KGYPSYFLIVAELIKHARSVGIRVGPGRGSAAGALVAYALTITNIDPLEHDLLFERFLNP 414

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R S PD DIDF   RR E+I Y   ++G ++VAQ+ITFG+++ K A++D  +       
Sbjct: 415  ERPSAPDIDIDFDDRRRGEMITYAAERWGEDKVAQVITFGTVKTKQAIKDSAKVHFGQPG 474

Query: 471  QVDR-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                           + K IP         +  ++ +  R+   +DP V ++ + ++ LE
Sbjct: 475  FQMADRINGALPPAIMAKDIPLKGITDPDHERYSEAAEVRQMVESDPDVKKIYDTARGLE 534

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R A  HA  +++    L   +PM++       +T ++    E  GL+K DFLGL+ L
Sbjct: 535  GVVRQAGVHACAVIMASVRLMDHIPMWKRPADGAYITGWDYPACEAIGLLKMDFLGLRNL 594

Query: 580  TLLQKSLDFLAQRG----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            T++  +++ + +          L        + Y LL+   TLG+FQL+S GM++ L+ M
Sbjct: 595  TVIGDAIENIKRNRGEEIHLEQLHADDPKVSKVYDLLSRGDTLGVFQLDSGGMQELLKRM 654

Query: 636  QPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM----LKETQGVI 689
            +P   +DI+A ++LYRPGP+  +    Y +RKNG+++I  IHP ++      L ET G+I
Sbjct: 655  KPTGFKDIVASLALYRPGPMGVNAHWDYADRKNGRKEITPIHPELEEPLKEILDETYGLI 714

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQ+M+I+Q ++ Y+  EAD  R+AMGKK  E + +Q ++F  G  +NG SK+    +
Sbjct: 715  VYQEQIMRISQKVANYTAGEADGFRKAMGKKKPEVLAQQYDKFWGGMQENGYSKSAMDAL 774

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +  +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K   +  D 
Sbjct: 775  WGTIEPFASYAFNKSHAAGYGLVSFWTAYLKAYYAPEYMAALLTSVGDKKDKSAIYLSDC 834

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDF 868
            R   I+++PPSVN    DF+     I + + AI+ VG+     I+++  D   F S  D+
Sbjct: 835  RHLGIKVLPPSVNESEEDFQAVGEDIRFGMGAIRNVGSEVVESIIKSRHDKGAFTSFSDY 894

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              +++     +RV E+L+ AGA D   + R  L+   ++     Q  +K       ++FA
Sbjct: 895  LDKIELAACTKRVTEALIKAGAFDDLNHPRKGLMLIHEDAVDAVQTTKKAADKGQFDLFA 954

Query: 929  HEKGTFSDKIT---LEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
               G   D  +            +       E+ +LG Y SGHPLD ++  L        
Sbjct: 955  GIGGGEDDAASNAFALDIPEDNWDRKHELALEREMLGLYVSGHPLDGFEEALAAQTDTPL 1014

Query: 984  EESVA--TIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
             + +      G  + +  ++    ++ +++ GS    VT  +    + E   F
Sbjct: 1015 TKILNDEVHNGQELIIGGIISGVDRRFSKRDGSPWAIVTVEDHNGAQVEILVF 1067


>gi|213965246|ref|ZP_03393443.1| DNA polymerase III, alpha subunit [Corynebacterium amycolatum SK46]
 gi|213952098|gb|EEB63483.1| DNA polymerase III, alpha subunit [Corynebacterium amycolatum SK46]
          Length = 1185

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/1070 (29%), Positives = 516/1070 (48%), Gaps = 50/1070 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S SFVHL  H+ YS+L+G   ++ + D++A    PA+ +TD  N+F +  F ++  +
Sbjct: 1    MANS-SFVHLHNHTEYSMLDGMAKIDLLADEVARQGMPAVGVTDHGNMFGSNAFYRQMKS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMT----------NQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             GI+PIIG +  +  +                    +   +     +L + A+G + L  
Sbjct: 60   KGIKPIIGIEAYMAPESRFNKKRIQWGEPHQRRDDVSGRGSYLHQTMLAANAQGLRNLFY 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   EG+I  TG  SG +           A +    +
Sbjct: 120  LSSMASYEGQISKYPRMDAELVAER-AEGIIATTGCPSGDVQTRLRLGQFDEALQAAGMW 178

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++G +  ++ L  H    +    S+++++     LP + TN+  +++ +  +AH+ ++
Sbjct: 179  QDIYGKENYFLELMDHGLDIETRVRSELLEIGRKLNLPPLVTNDCHYVTRDQAKAHEAML 238

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAP 290
             V     ++  DR +   D Y    +E +    D   P A +NT+ IA R     ++   
Sbjct: 239  CVQTGKTLNDPDRFKFDGDGYFIKSAEEMRATWDHLVPGACDNTLLIAERVEDYDELWEE 298

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 + K      +     L +  + GL  R            ++Y +R ++E+ VI  
Sbjct: 299  HPHDRMPKADVPEGETPTTWLHHNVMEGLRKRF-----EGREVPEEYIRRAEYEIEVIDG 353

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I+ A++  I VGPGRGS AGS+ AYA  IT+IDP+   LLFERFLNP
Sbjct: 354  KGYPSYFLIVAELIRHAREVGIKVGPGRGSAAGSLVAYATWITNIDPIEHGLLFERFLNP 413

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL--QMP 468
            +R S PD DIDF   RRDE+IRY  +++G ++VAQ++TFG+++ K AL+D  R    Q  
Sbjct: 414  ERPSAPDIDIDFDDRRRDEMIRYAADRWGEDKVAQVVTFGTVKTKQALKDSARVQFGQPG 473

Query: 469  YSQVDRLCKL-IPNDPAHPVS--------LQAIADDSRFREARLADPSVDRLLEISQKLE 519
            Y   DR+ K   P   A  +              + +  R+    DP V R+ E ++ LE
Sbjct: 474  YQIADRITKALPPAIMAKDIPLGGIVDPEHPRYGEAAEVRQLIETDPDVARIYETARGLE 533

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R    HA  +V+   PL   +PM++       +T ++    E  GL+K DFLGL+ L
Sbjct: 534  GVVRQTGVHACAVVMASVPLMDHIPMWKRQADGAIITGWDYPACEAIGLLKMDFLGLRNL 593

Query: 580  TLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T++   ++ +   RG  V L  +  DD + Y LL+   TLG+FQL+  GMR+ L+ MQP 
Sbjct: 594  TVIGDCIEHIKSNRGETVLLDDLQTDDPKVYELLSRGDTLGVFQLDGGGMRELLKRMQPT 653

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI------HPLIDPMLKETQGVIIYQ 692
              +DI+A ++LYRPGP+     ++       +             +  +L+ET G+I+YQ
Sbjct: 654  GFDDIVASLALYRPGPMGVNAHFDYADIKNGRKPYNAIHAELDEQLKEILEETHGLIVYQ 713

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQ+M+I+Q L+ Y+  +AD  R+AMGKK  E + K+   F  G  +NG SK     ++++
Sbjct: 714  EQIMKISQKLANYTAGQADGFRKAMGKKKPEVLAKEFVNFEGGMLENGYSKDAVQKLWDI 773

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  FA Y FNKSHAA Y ++SY TA++K +Y  E++AA +T   D+  K+  +  D R  
Sbjct: 774  ILPFASYAFNKSHAAGYGLVSYWTAYLKANYTAEYMAALLTSVADDKNKLAIYLSDCRHL 833

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
             I+++PP VN   +DF+     I + L AI+ VG      I++   +   F S  D+  +
Sbjct: 834  GIKVLPPDVNESGMDFEPVGEDIRFGLGAIRNVGHDVVASIVKTREEKGKFTSFSDYLDK 893

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            +++   N+R+ ESL+ AGA D  G+ R  L    +         +K       ++FA   
Sbjct: 894  IETLPCNKRITESLIKAGAFDSLGHPRKGLALIHEEAIDSVLSTKKAADKGQFDLFAGFG 953

Query: 932  GTFSD------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            G          +I +      +       E+ +LG Y SGHPLD ++  L          
Sbjct: 954  GDEDTGSESIFEIRVPD-EKWDRKHELTLEREMLGLYVSGHPLDGFEESLAAQTDTALTT 1012

Query: 986  SV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK-EYEANFF 1032
             V         I +  +V S  ++  + G     +   +      E   F
Sbjct: 1013 VVGGEVANNTEITIGGIVSSVDRRVNKNGQPWAIIGIEDHNGARVEVMAF 1062


>gi|52140905|ref|YP_085924.1| DNA polymerase III DnaE [Bacillus cereus E33L]
 gi|51974374|gb|AAU15924.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L]
          Length = 1108

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1027 (35%), Positives = 581/1027 (56%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFG-NFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPVFMSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS   EA+ NTVEIA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHAEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+          G   + +  RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  MYLRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|229048311|ref|ZP_04193879.1| DNA polymerase III subunit alpha [Bacillus cereus AH676]
 gi|228723036|gb|EEL74413.1| DNA polymerase III subunit alpha [Bacillus cereus AH676]
          Length = 1108

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/1027 (36%), Positives = 588/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL           G   + + +RLD ELNVI+RM FS YFLIV DF+++A 
Sbjct: 282  IYLRRVCEEGLRK-------RYGEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+  
Sbjct: 813  ATVTTLLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|323356540|ref|YP_004222936.1| DNA polymerase III, alpha subunit [Microbacterium testaceum StLB037]
 gi|323272911|dbj|BAJ73056.1| DNA polymerase III, alpha subunit [Microbacterium testaceum StLB037]
          Length = 1154

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1045 (34%), Positives = 544/1045 (52%), Gaps = 47/1045 (4%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +L+GA  +  ++ +      PAIA+TD  N F+A EF + A  AGI+PIIG +  +    
Sbjct: 1    MLDGAARIGPMVQEAVKQGMPAIAVTDHGNTFAAYEFYKTAKDAGIKPIIGIEAYVTPGT 60

Query: 82   NLKMTNQGKTPFPT-----------VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +     + +   P               + LL  T EG   L  L S+  + +      R
Sbjct: 61   HRSDKTRVRWGSPEQQSDDVSGSGAYTHMTLLSETTEGMHNLFRLSSKASM-EGYYFKPR 119

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +    LQ     GLI  TG  SG +         + A      F+ +FG +  +  +  H
Sbjct: 120  MDRELLQTYSR-GLIATTGCPSGEVQTRLRLGQYEAARAAAAEFQDIFGKENYFAEIMDH 178

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +R   S +++++    +PL+ TN+  +  + D  +H  L+ V   + +    R + 
Sbjct: 179  GLSIERRVMSDLLKISKDLNIPLLGTNDLHYTHQHDATSHAALLCVQSGSTLDDPKRFKF 238

Query: 249  TPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              D +Y+K+ +EM  +F D PEA +NT+ IA RC       A  +PRF     +     E
Sbjct: 239  DGDGYYVKSPAEMRQVFRDNPEACDNTLLIAERCDVEFDTSANYMPRFPVPPGE----TE 294

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + +  +   GL+ R   G           R++ ++E +VI +M F GYFL+VADFI WA
Sbjct: 295  GSWMIKEVENGLQDRYPGG------IPDAVRKQAEYETDVILQMGFPGYFLVVADFINWA 348

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N I VGPGRGSGAGS+ AYA+ ITD+DPL+  L+FERFLNPDR+SMPDFD+DF   RR
Sbjct: 349  KNNGIRVGPGRGSGAGSMVAYAMKITDLDPLQHGLIFERFLNPDRVSMPDFDVDFDDRRR 408

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DPAHP 486
             EVI+YV  KYG ERVAQI+T+G+++AK AL+D GR L  P+S  D+L K +P       
Sbjct: 409  GEVIQYVTEKYGDERVAQIVTYGTIKAKQALKDAGRVLGFPFSMGDKLTKAMPPAVMGKD 468

Query: 487  VS--------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            +              +   FR     DP    + + +  LE L R    HAAG+++   P
Sbjct: 469  MPLDGMFNPEHPRYKEAGEFRTLIETDPEAKTVFDTALGLENLKRQWGVHAAGVIMSSEP 528

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVD 597
            L  ++P+ R  +    VTQF+    E  GLIK DFLGL+ LT++  +LD   A RG  + 
Sbjct: 529  LIDIIPIMRREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTIINDALDNIEANRGHPLV 588

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
            L  +  DD  +Y LL    TLG+FQL+   MR  L  M+PD  EDI A+++LYRPGP+  
Sbjct: 589  LEDLALDDAASYELLARGDTLGVFQLDGGPMRSLLRLMRPDNFEDISAVLALYRPGPMGV 648

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPML----KETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            ++ + Y  RKN +++I  IHP ++  L      T G+I+YQEQVM +AQ ++GY+L +AD
Sbjct: 649  NSHINYALRKNKQQEIEPIHPELEEPLADILDTTYGLIVYQEQVMAVAQRVAGYTLGQAD 708

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK K E+DKQKE F  G ++ G        ++++L  FADY FNK+H AAY +
Sbjct: 709  LLRRAMGKKKKSELDKQKEIFFGGMTERGYGDVAQQTLWKVLESFADYAFNKAHTAAYGL 768

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SY TA++K HYP E++AA +T   D+ +K+  +  + R+  I+++PP VN     F   
Sbjct: 769  VSYWTAYLKAHYPAEYMAALLTSVGDSKDKMAVYLNECRRMGIRVLPPDVNESIRFFAAV 828

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I + L A++ VG      I+ A  D  + S  DF ++V     N+R +ESL+ AGA 
Sbjct: 829  GEDIRFGLGAVRNVGANVVDGIVAARQDAKYTSFHDFLAKVPMHVANKRTVESLIKAGAF 888

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI-FAHEKGTFSDKITLEKFSVENSSV 950
            D  G +R  LL+  ++  + A   ++   N      F            + +        
Sbjct: 889  DTLGSTRRALLEIHEDACEGAVSDKRREANGEVGFDFDSLWDEPQQVTKVPERPEWTKKD 948

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI---RGNNIRLAAMVVSKQQK 1007
            +   E+ +LG Y S HPL   +  L K       + +++     G+ + +A ++ S Q +
Sbjct: 949  KLAFEREMLGLYVSDHPLAGLEVPLAKHASTSIHDLLSSEDVQDGDQVTVAGLLTSVQHR 1008

Query: 1008 KTR-KGSRIGWVTFSEPAKEYEANF 1031
              +  G+  G VT  +   E    F
Sbjct: 1009 VAKQSGNPYGMVTVEDFNGEVTVMF 1033


>gi|254294080|ref|YP_003060103.1| DNA polymerase III subunit alpha [Hirschia baltica ATCC 49814]
 gi|254042611|gb|ACT59406.1| DNA polymerase III, alpha subunit [Hirschia baltica ATCC 49814]
          Length = 1145

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 470/1031 (45%), Positives = 653/1031 (63%), Gaps = 25/1031 (2%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P FVHL+V S+ SLL   +++  +      +  PA+AITD NN+F ALE S+     G
Sbjct: 11   DKPRFVHLRVRSALSLLGSMITIKKLCKWTFENGFPAVAITDDNNMFGALELSETLAPMG 70

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +QPII   L I  + N         P      + L      GY+ ++ L ++ +L     
Sbjct: 71   VQPIIAITLHIYDRIN---------PAAEPTELALFAQNEAGYKNMMILTTKGFLESPSG 121

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             +       L+   +EGLI  TGG +G + +       + A + LL   + F +RLYV L
Sbjct: 122  GTGVYLDDVLE--HSEGLICTTGGGNGEVTQLCAAGDEEGAREYLLKLNEAFPNRLYVEL 179

Query: 187  QRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRH    +   E  +V LAY  +LPLVATN + F+    ++AHD L+ +A ST VS +DR
Sbjct: 180  QRHGRLTEDKAEELLVDLAYELDLPLVATNEARFIKRAQHKAHDALLCIAGSTYVSVQDR 239

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            P+ +P+ Y+K   EM+++FSDLPEA+ENT EIARRCS+          + I         
Sbjct: 240  PKASPEQYMKTEEEMINLFSDLPEAIENTCEIARRCSYRP-----AWRKPILPNFTGDDG 294

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +E  EL  +A  GL++RL+ G +      Q Y  RLDFELN+I +M F GYFLIV+DFI+
Sbjct: 295  DEGEELDRQAREGLKMRLSSGIL--YEEEQVYWDRLDFELNIIRQMGFPGYFLIVSDFIK 352

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK+++IPVGPGRGSGAGS+ A+ LTITD+DPLRF LLFERFLNP+R+SMPDFD+DFCQD
Sbjct: 353  WAKEHDIPVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDVDFCQD 412

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR EVI Y + KYG +RVA IIT+G+LQAKA +RDVGR  Q+P+ QVD+L KLIP +PA+
Sbjct: 413  RRHEVIEYTKRKYGADRVAMIITYGTLQAKAVIRDVGRVHQLPFGQVDKLSKLIPFNPAN 472

Query: 486  PVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            P +  +AI  + +F++    +  V  L+E + +LEGLYR+A THAAG+VIGDRPL +L P
Sbjct: 473  PPTLQEAIDGEPKFKQEMRENEDVRNLVETALELEGLYRNAGTHAAGVVIGDRPLVELSP 532

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            +Y+D +SD+P TQFNMKW E  GL+KFDFLGLKTLT++Q++L F+   G ++      FD
Sbjct: 533  LYKDPKSDIPATQFNMKWAEHNGLVKFDFLGLKTLTVIQRALKFVISEGKQLTEKWHTFD 592

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D E Y LL++  TLG+FQLES+GMR  L  ++PDCIEDIIAL+SLYRPGP+ NI  Y  R
Sbjct: 593  DEEAYKLLSSGETLGVFQLESTGMRDTLRKVKPDCIEDIIALISLYRPGPMKNIDTYVAR 652

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            K G+E+I  +H  + P+L+ET GVI+YQEQVM+IAQ+L+GYSL EAD+LRRAMGKK  EE
Sbjct: 653  KEGREEIDYLHDDLKPVLEETYGVIVYQEQVMRIAQILAGYSLGEADLLRRAMGKKKPEE 712

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M KQK RF+ GA+K  +SK  A  IFEL+ +FA YGFNKSHAAAYAVI+YQTA++K  +P
Sbjct: 713  MLKQKVRFLEGAAKKDVSKERAEFIFELVNEFAGYGFNKSHAAAYAVIAYQTAYLKAKHP 772

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            VEFLA SM+L++ N EK+  F Q+ ++  I ++ P +     DF V D +IYY+L A+KG
Sbjct: 773  VEFLAGSMSLDLTNTEKLAAFFQETKRLKIPVVTPDITLCNADFDVRDQKIYYALGAVKG 832

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            VG      +  A  +KPF+ L DF  RVD +++N+RV ++L   G  D    +R +  ++
Sbjct: 833  VGKEAMLDVERARNEKPFEDLFDFAERVDPRQINKRVYQALSKCGGFDQLEKNRAKAFEA 892

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
             + +   +    ++R +   ++F  E      +  L K +  +S    + E   +GFY S
Sbjct: 893  SEMLAAMSNAANRDRNSNQNSLFGDEPPM---RPKLPKAAPWSSEKILDYELSSVGFYLS 949

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIR-LAAMVVSKQQKKTRK-GSRIGWVTFSE 1022
            GHPLD       +  I    + +   R      +  +V  + +K +   G +  ++T S+
Sbjct: 950  GHPLDDILEGPARERIVLSSQMMELGRERAALEMIGVVKVRVEKPSMSGGGKFAYITLSD 1009

Query: 1023 PAKEYEANFFP 1033
            P+ EYE    P
Sbjct: 1010 PSGEYELFVAP 1020


>gi|163942337|ref|YP_001647221.1| DNA polymerase III DnaE [Bacillus weihenstephanensis KBAB4]
 gi|163864534|gb|ABY45593.1| DNA polymerase III, alpha subunit [Bacillus weihenstephanensis KBAB4]
          Length = 1110

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1027 (35%), Positives = 584/1027 (56%), Gaps = 47/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVIRAKELGFSSLAITDENVMYGVIPFYKACKKNGIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+   T++ +F    Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVAHTYQNMFS-NFYISLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
              D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ 
Sbjct: 166  IQDELLLQEKLPEFINKVNVPVVATNDVRYINQSDALVHECLLSVEGGTKMTDPDRPRMK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS   EA++NT+ IA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMGALFSHAEEAVQNTITIAERCQVEIPFHVNQLPKFPVP----SNETND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+          G   + +  RLD ELNVI+RM FS YFLIV DF+++A 
Sbjct: 282  TYLRRVCEEGLQK-------RYGTPKEAHIGRLDHELNVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYELLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +    +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLLPRDIDIFSKLIPSKLGITL- 453

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 454  RDAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVEKTGKQIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K +I  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRQIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T +  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLENGYDETSSEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYVRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E   +K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALLEEREEKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDGFGVSRTTLWRSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYANLAR-----------DFDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 921

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 922  TAQYAELGKELEIPSLAQ--AMRHKKKVQRAIVYITSVKVIRTKKLQKMAFITFCDQNDE 979

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 980  MEAVIFP 986


>gi|229175312|ref|ZP_04302827.1| DNA polymerase III subunit alpha [Bacillus cereus MM3]
 gi|228608144|gb|EEK65451.1| DNA polymerase III subunit alpha [Bacillus cereus MM3]
          Length = 1108

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1027 (35%), Positives = 582/1027 (56%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------EKSYPLVLLAENEMGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE+    ++ +F D  Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARMYQSMF-DNFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPAFMSRINVPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHINQLPKFPVP----ANETND 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+          G   + + +RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282  MYLRRVCEEGLQK-------RYGTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++DL  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGTQIDLRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALLEEREKKVFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|71892068|ref|YP_277798.1| DNA polymerase III, alpha chain [Candidatus Blochmannia
            pennsylvanicus str. BPEN]
 gi|71796174|gb|AAZ40925.1| DNA polymerase III, alpha chain [Candidatus Blochmannia
            pennsylvanicus str. BPEN]
          Length = 1163

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/1048 (38%), Positives = 617/1048 (58%), Gaps = 41/1048 (3%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL VHS YS+++G  ++N ++ K A  + PA+A+TD NNLF  ++F   A  +GI+
Sbjct: 4    PRFIHLHVHSDYSMIDGLATVNKLITKAAYLKMPALALTDFNNLFGFIKFYDVAYKSGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PIIG    +          Q          +  LV+  +GY  LI L+S+ Y       +
Sbjct: 64   PIIGADFLV----------QDLIMDNKPSKLTCLVTDKQGYYHLIMLISKAYKNKCNNVA 113

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            + I   WL+E   +GLI+L+GG +G I R    N     E+ L  + K F +R Y+ L R
Sbjct: 114  LMIQRHWLKEY-NKGLILLSGGRNGDIGRYLLRNEKSKIEQCLYFYSKYFPNRYYLELIR 172

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                ++       ++L+    LP+VATN+  F++E+D+ AH+V +A+   T ++   + R
Sbjct: 173  TGRQHEESYLQLAIELSIAKGLPVVATNDVRFINEKDFLAHEVRVAIYAGTTLNNVQQLR 232

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              +   ++K+  EM  +FSD+PE+L N+VEIA RC+F + +       +   +     K 
Sbjct: 233  KYSSQQFMKSEQEMCELFSDVPESLVNSVEIAYRCNFTIDL-----GGYFLPQFPTGCKS 287

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             ++ L   A  GLE RL              + Y  RL  EL VI  M F  YFLIV +F
Sbjct: 288  AKDFLTTHAKKGLEERLILLFPKTKERLVQRKPYDLRLKNELQVINNMNFPSYFLIVMEF 347

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+WAK N+IPVGPGRGSGA S+ AY L IT++DPL+F LLFERFLNP+R+SMPD DIDFC
Sbjct: 348  IKWAKNNDIPVGPGRGSGASSLVAYVLKITELDPLQFDLLFERFLNPERISMPDLDIDFC 407

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D RD VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY+ ++R+ KLIP + 
Sbjct: 408  MDHRDLVIEHVSKTYGSEAVSQIITFGTMAAKAVIRDVGRVLGHPYALINRIAKLIPLES 467

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A + + + +     D  +  L++++ +LEG+ R+ S HA G+VI    ++   
Sbjct: 468  GITLK-KAFSIEPQLKLLYENDEDITELIDMALQLEGIVRNVSKHAGGVVIAPIKITDFS 526

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDL 598
            P+Y D  S  P+TQF+   IE+ GLIKFDFLGL+TLT++  +L  +           +D+
Sbjct: 527  PLYYDNDSIHPMTQFDKDDIERIGLIKFDFLGLRTLTIINHALKMINNTRLKQGLTIIDI 586

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              I   D +++H+L +  T  IFQLES G+++ ++ ++PDC ED+IAL++L+RPGP+ + 
Sbjct: 587  HSISLHDQKSFHVLQSSETTAIFQLESRGIKELIKRLKPDCFEDLIALIALFRPGPLQSG 646

Query: 659  VV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V  + NRK+G E I        H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L +AD
Sbjct: 647  MVDNFINRKHGYETISYPDAKWQHESLRPVLESTYGIILYQEQVMQIAQVLAGYTLGQAD 706

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRA+GKK  E+M KQ+  F  GA+KNGI  T+++ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 707  ILRRAIGKKKPEDMAKQRSFFNLGAAKNGIDNTLSMKIFDLVEKFAGYGFNKSHSAAYAL 766

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ISYQT W+KTHYP EF+AA+++ +MDN+ K+     + ++  + I PP++NT    F V 
Sbjct: 767  ISYQTLWLKTHYPAEFMAAALSSDMDNLNKVVYLIGECQKMKLIISPPNINTSQYHFYVN 826

Query: 832  -DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +  I Y   AIKG+G T+   I+ +      F  L DFC R+DS K+N R++E L+ +G
Sbjct: 827  ANKEIVYGFGAIKGIGKTSIESIITSRNKGGNFKELFDFCIRIDSTKINHRMIEKLILSG 886

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSVE 946
            A D FG  R +L+ SL+++ K A    KN+ +K  +IF     E  T +     +     
Sbjct: 887  ACDSFGIHRSKLMASLNDVLKRANQHIKNKYSKQTDIFEMRLDESNTIAISDRDDNTPQW 946

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRK--MGIKGYEESVATIRGNNIRLAAMVVSK 1004
            ++ +  E E+  LG Y + HP   Y   +++    I   ++ +       + +  ++VS 
Sbjct: 947  SNQLLLEKEKEALGLYLTSHPTIQYIKTIKRCASNIVNIKDVLLETDNKILHIFGLIVSI 1006

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + K ++KG R+ +    + +   E   F
Sbjct: 1007 RTKLSKKGKRVVFFILEDYSGRLEIMIF 1034


>gi|87199787|ref|YP_497044.1| DNA polymerase III, alpha subunit [Novosphingobium aromaticivorans
            DSM 12444]
 gi|87135468|gb|ABD26210.1| DNA polymerase III, alpha subunit [Novosphingobium aromaticivorans
            DSM 12444]
          Length = 1215

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 449/1066 (42%), Positives = 649/1066 (60%), Gaps = 40/1066 (3%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            ++  + +FV L++ SSY++L+GA+    I    A    PA AITD N L+ ++ +++   
Sbjct: 19   HMPHA-AFVPLRIFSSYTMLDGAIDPKAIAKTAAERGFPAAAITDRNGLYGSVAYAKACK 77

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
              G+QP+IG  L +   +            PT+  + L    A GY  L  LVSR +L  
Sbjct: 78   DMGVQPVIGTMLAVARPERDGAATGFGPAAPTIDWLALYAQDARGYDNLCHLVSRAHLDR 137

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
              + +  + L+ L    T+GLI LT  S G + +         AE  +    +LF +RLY
Sbjct: 138  PLEFAPHVVLADLV-GHTDGLICLTAASEGALAQLLAGGQQSAAEAYVDRLLELFPERLY 196

Query: 184  VNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + +  R+   +   E+ ++ LAY  +LPLVATN + F     Y+AHD ++ +A ST V  
Sbjct: 197  IEIARRNDAVEEASETALIDLAYARDLPLVATNPACFAERTFYDAHDAMLCIASSTHVDS 256

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             DRPR + + ++K  + M  +F DLPEAL NT+ +A+RC+ +     PILP     +  +
Sbjct: 257  ADRPRSSKEWWIKPAAVMEELFKDLPEALANTLVVAQRCAVMPPKRKPILPSLAGDQEGE 316

Query: 303  IQKEEEN--------------ELRNKAVAGLEVRLAQGAIAKGYHAQ-----------DY 337
             +   E+              E  +  +A +             H Q           DY
Sbjct: 317  ARMCAEDSRKGLVLRLEPYYPESTHAELARVLCLGPDAEPVAADHPQLVEAGVWEEVLDY 376

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            R+RL+FE+ +I RM F GYFLIVADFI+WAK++ IPVGPGRGSGAGS+ A+ALTITD+DP
Sbjct: 377  RKRLEFEIAIINRMGFGGYFLIVADFIKWAKEHGIPVGPGRGSGAGSLVAWALTITDLDP 436

Query: 398  LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
            ++  LLFERFLNP+R+SMPDFDIDFC+ RR EVIRYVQ KYG + VAQIITFG L+A+A 
Sbjct: 437  IKLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQRKYGEDHVAQIITFGKLKARAV 496

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQ 516
            LRD GR LQM Y Q DRLCK++PN P  P    +A+   +  +     DP V RL++++ 
Sbjct: 497  LRDTGRILQMSYGQTDRLCKMVPNHPTDPWPLPRALNGVAELKREYDRDPEVKRLIDLAM 556

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            +LEGL R++STHAAG+VIGDRPL+QLVP+YRD RSD+PVTQF+MK +E AGL+KFDFLGL
Sbjct: 557  QLEGLPRNSSTHAAGVVIGDRPLAQLVPLYRDPRSDMPVTQFDMKHVEDAGLVKFDFLGL 616

Query: 577  KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            KTL++L+K++D + +R +++DLS +P+DD +TY LL +  T+G+FQLES GMR+ L  ++
Sbjct: 617  KTLSVLRKAVDLMKKRSIEIDLSALPWDDEQTYKLLQSGDTVGVFQLESEGMRRTLAAVK 676

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            P    DIIALVSLYRPGP+DNI ++  RKNG E I   H  +  +L ET G+ +YQEQVM
Sbjct: 677  PTNFGDIIALVSLYRPGPMDNIPLFGRRKNGLEAIEYPHDKLAGILSETYGIFVYQEQVM 736

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAK 755
            Q AQ+L+GYSL +AD+LRRAMGKK++ EMD Q++RF+ G  + +GI    A  +F+L+ K
Sbjct: 737  QAAQILAGYSLGDADLLRRAMGKKVQAEMDAQRQRFVDGCKEVSGIPAAKANELFDLIDK 796

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA YGFNKSHAAAYA+++YQTAW+KTHYP EF AA+M  +M   EK+  F  D R+  + 
Sbjct: 797  FAGYGFNKSHAAAYALLAYQTAWLKTHYPHEFYAAAMCFDMHQSEKLSVFVDDMRRNGVA 856

Query: 816  IMPPSVNTPCVDFKVG----DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
            +  P +N    +F V        + Y+LA ++ VG      I+E   A+ PF SL+D   
Sbjct: 857  LAGPDINHSEAEFTVERTHDGYAVRYALAGLRNVGEKAMEQIVEEREANGPFASLDDLFR 916

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            R+ +  +NRR LE+L   GALDC   +R Q++ + + +   A+   ++RT+    +F  +
Sbjct: 917  RIPAGSMNRRQLEALAAGGALDCLEPNRAQIIANAELLMAVAEEASRSRTSGQGGLFGGD 976

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT- 989
                +    L      + + +   E+   GFYF+ HP++ Y+ +    G + Y   + + 
Sbjct: 977  -DHATPATRLSDTKPWSRADQMAAERENFGFYFAAHPVEEYRAVASANGARSYGSLMTSS 1035

Query: 990  -IRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               G      +AA+V + Q++KT+KG       FS+ +  + A+ F
Sbjct: 1036 GEPGGRSGAVMAALVENVQKRKTKKGKDFVMADFSDSSGLFSASCF 1081


>gi|269302450|gb|ACZ32550.1| DNA polymerase III, alpha subunit [Chlamydophila pneumoniae LPCoLN]
          Length = 1240

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/1075 (32%), Positives = 569/1075 (52%), Gaps = 60/1075 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L  HS YS+L+   S+ + + K      PA+A+TD  NL+ A++F ++    GIQPII
Sbjct: 4    IPLHCHSQYSVLDAMSSIKDFVAKGQEFGIPALALTDHGNLYGAVDFYKECTQKGIQPII 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+  I          + ++       ++LL    +GY+ L  L S  +  +      RI
Sbjct: 64   GCECYIAPGSRFDKKKEKRSR--AAHHLILLCKNEQGYRNLCILTSLAFT-EGFYYFPRI 120

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L++  +EGLI L+G  S  +  A    S +     L  F+ LF D  +  +Q H+ 
Sbjct: 121  DKDLLRQY-SEGLICLSGCLSSSVSDAALK-SPEALLLELQWFQDLFKDDYFTEVQLHKM 178

Query: 192  YDR----------------------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             +                          + V++ +    +P VATN+  +++  D++AH+
Sbjct: 179  SEESIAGFKEEWLKQEYYSLIEKQIKVNTAVLEASKRLGIPTVATNDIHYINANDWQAHE 238

Query: 230  VLMAVAHSTVVSQKDRPRV----------TPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            +L+ V     V    +             + ++Y K+ ++M  +F D+PE + NT+E+A+
Sbjct: 239  ILLNVQSGETVRIAKQNTHIPNPKRKVYRSREYYFKSPAQMAELFKDIPEVISNTLEVAK 298

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEEN--------ELRNKAVAGLEVRLAQGAIAK- 330
            RC F         P ++ +    +    E          L+  A   L  + +   +A  
Sbjct: 299  RCDFTFDFSKKHYPIYVPESLKTLNSYTEEDRYQASAVFLKQLAEEALPKKYSSEVLAHI 358

Query: 331  ------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                         ++R+D E+ +I       Y LIV D I WAK N IPVGPGRGSGAGS
Sbjct: 359  AKKFPHRDPIDIVKERMDMEMAIIIPKGMCDYLLIVWDIIHWAKANGIPVGPGRGSGAGS 418

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            V  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + VA
Sbjct: 419  VLLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDNVA 478

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            QIITFG+++AK A++DVGR L M  S+V+ + K IP    +    +A+  D    +  + 
Sbjct: 479  QIITFGTMKAKMAVKDVGRTLDMALSKVNHIAKHIP--DLNTTLSKALETDPDLHQLYIN 536

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            D    ++++++  LEG  R+   HAAG++I    L+  +P+     S +  TQ++MK +E
Sbjct: 537  DAESAQVIDMALCLEGSIRNTGVHAAGVIICGDQLTNHIPICISKDSTMITTQYSMKPVE 596

Query: 565  KAGLIKFDFLGLKTLTLLQ-KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              G++K D LGLKTLT +         + G  + ++ +P DD  T+ LL    T+GIFQ+
Sbjct: 597  SVGMLKVDLLGLKTLTSINIAMSAIEKKTGQSLAMATLPLDDATTFSLLHQGKTMGIFQM 656

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES GM++  + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++ +LK
Sbjct: 657  ESKGMQELAKNLRPDLFEEIIAMGALYRPGPMDMIPSFINRKHGKEIIEYDHPLMESILK 716

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  ++M++++E+F   A  NGI  
Sbjct: 717  ETYGIMVYQEQVMQIAGALASYSLGEGDVLRRAMGKKDFQQMEQEREKFCKRACNNGIDP 776

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +A  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ 
Sbjct: 777  ELATVIFDKMEKFAAYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDSDDIEKVG 836

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862
            K  ++A+   I I+PP +N     F   D  I +++ AIKG+G      I+E      P+
Sbjct: 837  KLIREAQSMGIPILPPHINVSSNHFVATDEGIRFAMGAIKGIGHGLIESIVEERDHHGPY 896

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
            +S+ DF  R D KK++++ +ESL+ AG  DCF  +R  LL S++ + +     +K   + 
Sbjct: 897  ESIRDFIQRSDLKKVSKKSIESLIDAGCFDCFDSNRDLLLASVEPLYEAIAKDKKEAASG 956

Query: 923  HENIFAHEKGTFSDKITL---EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                F        +++ +   +     +     + E+ +LG Y + HP+D  +  L ++ 
Sbjct: 957  VMTFFTLGAMDRKNEVPICLPKDIPTRSKKELLKKEKELLGIYLTEHPMDTVRDHLSRLS 1016

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKK-TRKGSRIGWVTFSEPAKEYEANFFP 1033
            +    E      G+ +R   ++     K  ++   +   +  S+    YE   +P
Sbjct: 1017 VVLSGEFENLPHGSVVRTVFIIDKVTTKISSKAQKKFAVLRVSDGIDSYELPIWP 1071


>gi|282891879|ref|ZP_06300358.1| hypothetical protein pah_c200o024 [Parachlamydia acanthamoebae str.
            Hall's coccus]
 gi|281498139|gb|EFB40479.1| hypothetical protein pah_c200o024 [Parachlamydia acanthamoebae str.
            Hall's coccus]
          Length = 1241

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/1071 (34%), Positives = 579/1071 (54%), Gaps = 66/1071 (6%)

Query: 23   LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82
            ++ + S+N I +K A  + PA+A+TD  N++ A+EF +    A ++PI+GC++ +  +  
Sbjct: 1    MDASASINLIAEKAAEFKMPAVALTDHGNMYGAVEFFKACQGAQVKPILGCEVYVAPESR 60

Query: 83   LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142
            L     G         + LL  + EGY+ L +L S  +L +      RI    L++   E
Sbjct: 61   LDRKKIGNRSD---FHLTLLAKSMEGYKNLCKLSSIGFL-EGFYYHPRIDHEVLEKY-KE 115

Query: 143  GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE----- 197
            GLI L+G  S  +       + +   K L  +K LFG+  Y+ +QRH   +   +     
Sbjct: 116  GLICLSGCLSSRLSSEILQGTPESIRKHLAWYKDLFGEDYYLEVQRHTMSEENIQRDGLY 175

Query: 198  --------------------SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
                                  +V+L+    +PLVATN+S ++  ED+  H++L+ V   
Sbjct: 176  QETWLLQNYQEYIEKQTKVTQALVELSQEFGIPLVATNDSHYIEREDWREHEILLNVQSG 235

Query: 238  TV----------------VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
                              ++ K R   + + Y K+ ++M  +F DLP+AL +T+EIA +C
Sbjct: 236  EPCEILEKDAMGNPKFRQLNPKRRVYSSHECYFKSPTQMQEVFKDLPQALASTLEIAEKC 295

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEEN-------ELRNKAVAGLEVRLA-------QGA 327
               L       P ++    +     +E         L +    G++ R         Q  
Sbjct: 296  HVQLDFKTKHYPVYVPPFLEGQSYTKEERAQAVEKYLWDLCEEGIKKRYDADKLAKIQEL 355

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
                   Q  R+RL++E+ +I   + S Y LIV DFI WAK+N IPVGPGRGSGAGS+  
Sbjct: 356  FPDKDPTQIVRERLEYEMGIIVPKEMSDYLLIVWDFINWAKRNQIPVGPGRGSGAGSIVL 415

Query: 388  YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
            Y + +TDI+PLRF L FERF+NP+R+S PD D+D C DRR +VI+Y   KYG + VAQII
Sbjct: 416  YLIGVTDIEPLRFHLFFERFINPERLSYPDIDVDICMDRRGDVIQYTLEKYGKDNVAQII 475

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            TFG+++A+ A++DVGR L +P S+V+ + KL+P D    +    +  D   R     D  
Sbjct: 476  TFGTMKARMAIKDVGRVLSVPLSKVNEIAKLVPEDLNITLEKA-LEKDPDLRAMYETDED 534

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
              R+++I +KLEG  R    HAAGI+I   PLS ++P+     SD+P TQ++MK +E  G
Sbjct: 535  AKRIIDIGKKLEGSIRSTGIHAAGIIISGAPLSSIIPICNAKDSDMPATQYSMKPVEMVG 594

Query: 568  LIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            ++K DFLGLKTLT +Q+ +  +    G  +D   +P DD  T+ LL    TLG+FQLES+
Sbjct: 595  MLKVDFLGLKTLTAIQQCVASVNVSTGKLIDWVNLPLDDVRTFDLLNQGKTLGVFQLESA 654

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
            GM+     +  D  E+IIA+ +LYRPGP+D I  + NRK+G+E I + HP +  +L ET 
Sbjct: 655  GMQDLARQLHLDKFEEIIAVGALYRPGPMDMIPSFINRKHGREPIENDHPWMKDILAETY 714

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK   +M +Q+E+F  GA +N I +T +
Sbjct: 715  GIMVYQEQVMQIASKLARYSLGEGDVLRRAMGKKDMAQMAQQREKFRLGALENEIEETTS 774

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
            + +F+ + KFA YGFNKSHAAAY  +SY TA++K ++P E++A+ MT + D++ K+ KF 
Sbjct: 775  MLVFDKMEKFAAYGFNKSHAAAYGYLSYVTAYLKANHPREWMASLMTCDSDDLSKVAKFI 834

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSL 865
            ++A+   I I+PP +N     F      I +++  IKGVG      I++      PF   
Sbjct: 835  REAQTMGIAILPPDINEAGSTFIATPQGIRFAMKGIKGVGEGVVEAIVQERNRSGPFTHF 894

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
              F  R+D KK+ ++ +E+LV AG+ D  G+SR  L QS+D + + A   ++   +    
Sbjct: 895  YQFFKRIDLKKVGKKSIENLVDAGSFDFTGWSRDALRQSIDPMYETALKEKREEQSGVLT 954

Query: 926  IFAHEKGTFSDKITLEK--FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
             F     T   K +      +  +       E+ +LGF+ +GHPLD ++  ++++    +
Sbjct: 955  FFDLMGATSEAKFSFAPNVLNPTSKQNILLKEKELLGFFLTGHPLDSFQEYMQRLSCVNF 1014

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
                        R A ++ S Q + + K   +   +  S+  + YE   +P
Sbjct: 1015 SAIDMLGNDAVFRSAVIIESVQLRLSAKTQKKFAILRISDGIESYELPIWP 1065


>gi|229163596|ref|ZP_04291545.1| DNA polymerase III subunit alpha [Bacillus cereus R309803]
 gi|228619846|gb|EEK76723.1| DNA polymerase III subunit alpha [Bacillus cereus R309803]
          Length = 1105

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1025 (35%), Positives = 580/1025 (56%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPIIG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKNGIQPIIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++                 +VLL     GYQ L+++ S +    +      I 
Sbjct: 62   LTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    +    AE+   T++ +FGD  Y++LQ H   
Sbjct: 107  KKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARTYQNMFGD-FYISLQHHAIQ 164

Query: 193  DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250
            D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  T 
Sbjct: 165  DELLLQEKLPEFINKVNIPVVATNDVRYINQSDALVHECLLSVEGGTKMTDPDRPRLKTD 224

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +YLK+  EM ++FS   EA+ NT +IA RC   +  H   LP++         +  +  
Sbjct: 225  QYYLKSSDEMGALFSQAEEAIYNTAKIAERCHVEIPFHVNQLPKYPVP----SSETNDTY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     G+           G   + + QRL+ ELNVI+ M FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGMRK-------RYGAPKEVHIQRLNHELNVISSMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
               +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  + +  +  
Sbjct: 454  -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSIAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGKQIDIRKLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  KNG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLKNGYEETSANKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL    
Sbjct: 812  VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGISRTNLWKSLKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA                 + G    K    +    +   +   E+  LGFY S +P  
Sbjct: 872  EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLGKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|206969546|ref|ZP_03230500.1| DNA polymerase III, alpha subunit [Bacillus cereus AH1134]
 gi|206735234|gb|EDZ52402.1| DNA polymerase III, alpha subunit [Bacillus cereus AH1134]
          Length = 1108

 Score =  681 bits (1757), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1027 (35%), Positives = 587/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS  PE ++NT++IA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEVIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL           G   + + +RL+ ELNVI+RM FS YFLIV DF+++A 
Sbjct: 282  IYLRRVCEEGLRK-------RYGEPKEVHIKRLNHELNVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP +  +L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKSILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|319787804|ref|YP_004147279.1| DNA polymerase III subunit alpha [Pseudoxanthomonas suwonensis 11-1]
 gi|317466316|gb|ADV28048.1| DNA polymerase III, alpha subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 1191

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/1078 (38%), Positives = 600/1078 (55%), Gaps = 78/1078 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNN--------------ILDKIAADQQPAIAITDTNNLFS 54
              FVHL VH+ YSL +  + +                +L +      PA+A+TD NNLF+
Sbjct: 2    SGFVHLHVHTEYSLADSIIRVPEKPDQADPAKAKRPNLLSRAVELGLPALAVTDLNNLFA 61

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             ++F +   A GI+P+ G  L I             +P      +  LV    GY  L  
Sbjct: 62   LIKFYKACEAVGIKPVAGADLMIA-----------SSPGEAPWRMTALVRDHGGYLNLSR 110

Query: 115  LVSRMYLLDQGK-QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            L++R ++    +   V +   W++E G+ GLI+L  G      R    N   +A++ L  
Sbjct: 111  LLTRAWMEGHRQEGGVAVRPEWVRECGS-GLILL-AGRESLAGRLASENRHDLAQQHLAD 168

Query: 174  FKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +++ F   L + L R R   +    S  +  A    +P+VA+N+  FL    ++AH+  +
Sbjct: 169  WQRDFDGNLCLELTRTRRDGEEAFNSFALHAAAERGIPVVASNDVRFLDRAGFDAHEARV 228

Query: 233  AVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
             +A   V+    RPR  +P+ YLK+  EM ++F+D+P+A+ NTVE+ARRC+  L +    
Sbjct: 229  CIASGRVLDDPKRPRDYSPEQYLKSPEEMAALFADIPDAISNTVELARRCNLELTLGKYA 288

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            LP +         +  ++ +R ++ AG+E RLA+  +A G   +DY  RLDFEL+ I +M
Sbjct: 289  LPDYPVP----SDETLDSWIRKESYAGIEERLAKNPLAPGKTREDYFARLDFELDTIIKM 344

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F GYFLIVADFIQW K   IP+GPGRGSGAGS+ A+AL ITD+DPL ++LLFERFLNP+
Sbjct: 345  GFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALKITDLDPLPYNLLFERFLNPE 404

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R+SMPDFDIDFC DRRDEVI YV  KYG ERV+QIIT+G++ AKA +RD GR L  PY  
Sbjct: 405  RVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDTGRVLGFPYGF 464

Query: 472  VDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
            VD + KL+PN     +              +   +   ++  V  L++++++LE L R+A
Sbjct: 465  VDGVAKLVPNILGITLKDAMGEGKDSEMASAELIQRYGSEDDVRDLIDLARQLEDLTRNA 524

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
              HA G+VI   PL    P++ +   D     PVTQF+   +E+ GL+KFDFLGL+TLT+
Sbjct: 525  GKHAGGVVIAPTPLHTFCPLFAEHDHDGLGRNPVTQFDKNDVEEVGLVKFDFLGLRTLTI 584

Query: 582  LQKSLDFLAQRGVKVDLSL-----IPFDDHETY-HLLTTKGTLGIFQLESSGMRQALEGM 635
            +  ++  + +R  +  +       +P DD  TY  +  +  T  +FQ ESSGMR+ L+  
Sbjct: 585  IDWAVKAINRRHERAGIPPLDIAALPLDDAATYKDIFASGNTGAVFQFESSGMRRLLKDA 644

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
            +PD  ED+IALVSLYRPGP+D I  +N RK+G+++IV   P  + +L +T G+++YQEQV
Sbjct: 645  RPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEAILADTYGIMVYQEQV 704

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            MQ+AQ++ GYSL  AD+LRRAMGKKI  EM K +E F  GA++ G+ +  A  IF+L+ K
Sbjct: 705  MQMAQIVGGYSLGGADLLRRAMGKKIPAEMAKHREMFREGAARGGVDEKKADEIFDLMEK 764

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA YGFNKSHAAAYA++SYQTAW+K HYP EF+AA+M+ +MDN +K+  F  +AR   + 
Sbjct: 765  FAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATMSSDMDNTDKVVGFLVEARNLGLA 824

Query: 816  IMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873
            I+PP+VN     F+ V  + I Y L AIKGVG      I+    A   +  L DFC RVD
Sbjct: 825  ILPPTVNDSPYMFEAVTADTIRYGLGAIKGVGRGLCEAIVAEREAGGDYRDLLDFCRRVD 884

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            S KLNRR LE++V AGALD  G +R  L+  L  + K    + K       ++F      
Sbjct: 885  STKLNRRALEAMVNAGALDALGRNRATLMLQLPEVLKATDQMAKEAAAGQTSLFGMPSAD 944

Query: 934  FSD--KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                 ++ L + +        + E+  LG Y SGHP D Y+  +R +      +      
Sbjct: 945  AGPSMQLDLPECAEWPLRQVLDGERETLGHYLSGHPFDPYREDVRGLVGSDLGDLEKL-- 1002

Query: 992  GNNIRLAAMVVSKQQKKT-----------------RKGSRIGWVTFSEPAKEYEANFF 1032
                  A       +K++                 RKG    +V   +     E   F
Sbjct: 1003 ----WAAGT-SGANEKRSWRPEVQVVVAGLVVGLRRKGDSQVFVQLEDGRGRLECGVF 1055


>gi|23308898|ref|NP_601331.2| DNA polymerase III subunit alpha [Corynebacterium glutamicum ATCC
            13032]
 gi|21324900|dbj|BAB99523.1| DNA polymerase III alpha subunit [Corynebacterium glutamicum ATCC
            13032]
          Length = 1194

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/1073 (29%), Positives = 521/1073 (48%), Gaps = 51/1073 (4%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            ++ K  SFVHL  H+ +S+L+G   ++ + D++ A   PA+ ITD  N++ +  F +K  
Sbjct: 6    HMAKQSSFVHLHNHTEFSMLDGMAKIDMLADEVKAQGMPAVGITDHGNMYGSNPFYRKMT 65

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLI 113
              GI+PIIG +  +  +   K                +         +L     G + L 
Sbjct: 66   EMGIKPIIGIETYMAPESRFKKERVRWGEPHQKSDDVSGSGAYLHQTMLAENTTGLRNLF 125

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             L S      Q  +  R+    + E   EG+I  TG  SG +           A +    
Sbjct: 126  YLSSMASYEGQLGKWPRMDADIIAE-HAEGIIATTGCPSGDVQTRLRLGQFDEALEAAAM 184

Query: 174  FKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            ++ ++G D  ++ L  H    +    S+++++     LP + TN+  ++ E   +AH+ +
Sbjct: 185  WQDIYGRDNYFLELMDHGLDIETRVRSELLEIGRKLNLPPLVTNDCHYVLESQAQAHEAM 244

Query: 232  MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHA 289
            + V     +  +DR +     Y    +E +    D       +NT+ IA R     ++  
Sbjct: 245  LCVQTGKTLHDEDRFKFGGTGYYVKSAEQMRALWDDMVPDGCDNTLWIAERVQSYDEIWE 304

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                  +              L ++ +AGLE        +     +DY +R ++E++VI 
Sbjct: 305  EHSHDRMPIADVPEGYTPTTWLHHEVMAGLE-----DRFSGQQVPEDYIERAEYEISVID 359

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
               +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LLFERFLN
Sbjct: 360  MKGYPSYFLIVAEIIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHGLLFERFLN 419

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K AL+D  R      
Sbjct: 420  PERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQALKDSARVQMGQP 479

Query: 470  SQVDR---LCKLIPNDPAHPVSLQAI--ADDSRF------REARLADPSVDRLLEISQKL 518
                    + +L P   A  + L  I   D  RF      R+    DP V R+ + ++ L
Sbjct: 480  GYQIADRVIKELPPAIMAKDIPLSGITDPDHPRFNEAGAVRQLIETDPDVKRIYDTARGL 539

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EG+ R +  HA  +++   PL   +PM++       +T ++    E  GL+K DFLGL+ 
Sbjct: 540  EGVVRQSGVHACAVIMSSVPLLDCIPMWKRPADGALITGWDYPACEAIGLLKMDFLGLRN 599

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPF--DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            LT++  +++ +        L L     +D ETY LL    TLG+FQL+  GM++ L+ MQ
Sbjct: 600  LTVIGDAIENIKANRDGEVLDLENLAIEDEETYKLLGRGETLGVFQLDGGGMQELLKRMQ 659

Query: 637  PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQGVII 690
            P    DI+A ++LYRPGP+  +    Y +RKNG++ I  IHP     ++ +L ET G+I+
Sbjct: 660  PTGFNDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEALEEILGETYGLIV 719

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQ+M+I+Q ++ Y+  +AD  R+AMGKK  E ++K+   F  G   NG S      ++
Sbjct: 720  YQEQIMRISQKVANYTAGQADGFRKAMGKKKPEVLEKEFANFEGGMKANGYSDAAIKTLW 779

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            + +  FA Y FNKSHAA Y ++S+ TA++K HY  E++AA +T   DN +K   +  D R
Sbjct: 780  DTILPFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDKSAIYLSDCR 839

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFC 869
               I+++ P +N   ++F      I Y L AI+ VG      I++   +   F    D+ 
Sbjct: 840  HLGIRVLSPDINESSLNFLPVGTDIRYGLGAIRNVGAEVVDSILDTRKEKGLFKDFSDYL 899

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             ++D+   N+R+ ESL+  GA D  G++R  L+   ++        +K       ++FA 
Sbjct: 900  DKIDTLPCNKRITESLIKGGAFDSLGHARKGLMLVFEDAVDSVIATKKAADKGQFDLFAA 959

Query: 930  EKGTFSDKI------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                 +D +      T+      +       E+ +LG Y SGHPLD Y+  +        
Sbjct: 960  FDSDNNDDVASFFQITVPD-DEWDRKHELALEREMLGLYVSGHPLDGYEDAIAAQVDTAL 1018

Query: 984  EESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
               V      G  + +  ++    ++ ++K GS    VT  +      E   F
Sbjct: 1019 TTIVAGELKHGAEVTVGGIISGVDRRFSKKDGSPWAIVTIEDHNGASVELLVF 1071


>gi|228987852|ref|ZP_04147961.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            tochigiensis BGSC 4Y1]
 gi|228771900|gb|EEM20357.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            tochigiensis BGSC 4Y1]
          Length = 1105

 Score =  681 bits (1756), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1025 (35%), Positives = 580/1025 (56%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PIIG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++                 +VLL     GYQ L+++ S +    +      I 
Sbjct: 62   LTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    +    AE+    ++ +FG   Y++LQ H   
Sbjct: 107  KKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMFG-NFYMSLQHHAIQ 164

Query: 193  DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250
            D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  T 
Sbjct: 165  DELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F         +  +  
Sbjct: 225  QYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----ANETNDTY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL+          G   + +  RL+ ELNVI+ M FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
               +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 454  -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL    
Sbjct: 812  VTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA                 + G    K    +    +   +   E+ VLGFY S +P  
Sbjct: 872  EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|62390966|ref|YP_226368.1| DNA polymerase III subunit alpha [Corynebacterium glutamicum ATCC
            13032]
 gi|41326305|emb|CAF20467.1| PUTATIVE DNA POLYMERASE III, ALPHA CHAIN [Corynebacterium glutamicum
            ATCC 13032]
          Length = 1188

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/1072 (29%), Positives = 520/1072 (48%), Gaps = 51/1072 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K  SFVHL  H+ +S+L+G   ++ + D++ A   PA+ ITD  N++ +  F +K   
Sbjct: 1    MAKQSSFVHLHNHTEFSMLDGMAKIDMLADEVKAQGMPAVGITDHGNMYGSNPFYRKMTE 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             GI+PIIG +  +  +   K                +         +L     G + L  
Sbjct: 61   MGIKPIIGIETYMAPESRFKKERVRWGEPHQKSDDVSGSGAYLHQTMLAENTTGLRNLFY 120

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   EG+I  TG  SG +           A +    +
Sbjct: 121  LSSMASYEGQLGKWPRMDADIIAE-HAEGIIATTGCPSGDVQTRLRLGQFDEALEAAAMW 179

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++G D  ++ L  H    +    S+++++     LP + TN+  ++ E   +AH+ ++
Sbjct: 180  QDIYGRDNYFLELMDHGLDIETRVRSELLEIGRKLNLPPLVTNDCHYVLESQAQAHEAML 239

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHAP 290
             V     +  +DR +     Y    +E +    D       +NT+ IA R     ++   
Sbjct: 240  CVQTGKTLHDEDRFKFGGTGYYVKSAEQMRALWDDMVPDGCDNTLWIAERVQSYDEIWEE 299

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                 +              L ++ +AGLE        +     +DY +R ++E++VI  
Sbjct: 300  HSHDRMPIADVPEGYTPTTWLHHEVMAGLE-----DRFSGQQVPEDYIERAEYEISVIDM 354

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LLFERFLNP
Sbjct: 355  KGYPSYFLIVAEIIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHGLLFERFLNP 414

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K AL+D  R       
Sbjct: 415  ERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQALKDSARVQMGQPG 474

Query: 471  QVDR---LCKLIPNDPAHPVSLQAI--ADDSRF------REARLADPSVDRLLEISQKLE 519
                   + +L P   A  + L  I   D  RF      R+    DP V R+ + ++ LE
Sbjct: 475  YQIADRVIKELPPAIMAKDIPLSGITDPDHPRFNEAGAVRQLIETDPDVKRIYDTARGLE 534

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G+ R +  HA  +++   PL   +PM++       +T ++    E  GL+K DFLGL+ L
Sbjct: 535  GVVRQSGVHACAVIMSSVPLLDCIPMWKRPADGALITGWDYPACEAIGLLKMDFLGLRNL 594

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPF--DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            T++  +++ +        L L     +D ETY LL    TLG+FQL+  GM++ L+ MQP
Sbjct: 595  TVIGDAIENIKANRDGEVLDLENLAIEDEETYKLLGRGETLGVFQLDGGGMQELLKRMQP 654

Query: 638  DCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQGVIIY 691
                DI+A ++LYRPGP+  +    Y +RKNG++ I  IHP     ++ +L ET G+I+Y
Sbjct: 655  TGFNDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEALEEILGETYGLIVY 714

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQ+M+I+Q ++ Y+  +AD  R+AMGKK  E ++K+   F  G   NG S      +++
Sbjct: 715  QEQIMRISQKVANYTAGQADGFRKAMGKKKPEVLEKEFANFEGGMKANGYSDAAIKTLWD 774

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  FA Y FNKSHAA Y ++S+ TA++K HY  E++AA +T   DN +K   +  D R 
Sbjct: 775  TILPFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDKSAIYLSDCRH 834

Query: 812  FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
              I+++ P +N   ++F      I Y L AI+ VG      I++   +   F    D+  
Sbjct: 835  LGIRVLSPDINESSLNFLPVGTDIRYGLGAIRNVGAEVVDSILDTRKEKGLFKDFSDYLD 894

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            ++D+   N+R+ ESL+  GA D  G++R  L+   ++        +K       ++FA  
Sbjct: 895  KIDTLPCNKRITESLIKGGAFDSLGHARKGLMLVFEDAVDSVIATKKAADKGQFDLFAAF 954

Query: 931  KGTFSDKI------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                +D +      T+      +       E+ +LG Y SGHPLD Y+  +         
Sbjct: 955  DSDNNDDVASFFQITVPD-DEWDRKHELALEREMLGLYVSGHPLDGYEDAIAAQVDTALT 1013

Query: 985  ESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
              V      G  + +  ++    ++ ++K GS    VT  +      E   F
Sbjct: 1014 TIVAGELKHGAEVTVGGIISGVDRRFSKKDGSPWAIVTIEDHNGASVELLVF 1065


>gi|172040866|ref|YP_001800580.1| DNA polymerase III subunit alpha [Corynebacterium urealyticum DSM
            7109]
 gi|171852170|emb|CAQ05146.1| DNA polymerase III, alpha subunit [Corynebacterium urealyticum DSM
            7109]
          Length = 1188

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/1072 (29%), Positives = 522/1072 (48%), Gaps = 51/1072 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S SFVHL  H+ YS+L+G   ++ + ++++    PA+ +TD  N+F A  F +   A
Sbjct: 1    MSRS-SFVHLHNHTEYSMLDGMAKVDMLAEEVSRQGMPAVGMTDHGNMFGADAFYRTMTA 59

Query: 65   AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AGI+PIIG +  +                +      +         +L   A G + L  
Sbjct: 60   AGIKPIIGIEAYMAPDSRFNMNRVRWGNPEQKKDDVSASGAYLHQTMLAENATGLRNLFY 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + E   EG+I  TG  SG +           A +    +
Sbjct: 120  LSSMASYEGQLGKWPRMDAELIAE-HAEGVIATTGCPSGDVQTRLRLGQFNEALEAAAMW 178

Query: 175  KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++G D  ++ L  H    ++    +++++    +LP + TN+  ++ E    AH+V++
Sbjct: 179  QDIYGKDNFFLELMDHGLEIEKRVRDELMEIGRKLDLPPLVTNDCHYVLENQAAAHEVML 238

Query: 233  AVAHSTVVSQK------DRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFI 284
             V   + + +        R   +   Y    +E +    D       +NT+ IA R    
Sbjct: 239  CVQTGSTMDEPTIDEGGKRFAFSGSSYYIRTAEDIRNQWDHVVPDGCDNTLWIAERVQDY 298

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
             ++        +            + L ++   GLE R   G +      Q+Y  R ++E
Sbjct: 299  GEIWEEHPYDRMPVAEVPEGHTPTSWLTHEVNRGLEERFNGGPV-----PQEYLDRAEYE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            ++VI    +  YFLIVA+ I++A+   I VGPGRGS AG++ AYALTIT+IDP+   LLF
Sbjct: 354  ISVIDMKGYPSYFLIVAELIKYARSVGIRVGPGRGSAAGALVAYALTITNIDPIEHGLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K A++D  RA
Sbjct: 414  ERFLNPERPSAPDIDIDFDDRRRGEMIRYASDRWGEDKIAQVITFGTVKTKQAIKDSARA 473

Query: 465  LQMPYSQVDR-----------LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
                                 + K I             A+ +  R+    DP V+++ E
Sbjct: 474  WYGQAGFQMADRITKALPPAIMAKDIELKGIKDPEHPRYAEAAEVRQLIDTDPQVNKIYE 533

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             +  LEG+ R A  HA  +++   PL   +PM++  +    +T +     E  GL+K DF
Sbjct: 534  DALGLEGVVRQAGVHACAVIMSSVPLLDCIPMWKRKQDGALITGWPYPACEAIGLLKMDF 593

Query: 574  LGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL+ LT++  ++D + + RG   DL  +  +D  TY LL    TLG+FQL+S GM++ L
Sbjct: 594  LGLRNLTVIGDAIDNIKKNRGEDFDLEGLATEDAATYELLARGDTLGVFQLDSGGMQELL 653

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPM----LKETQ 686
            + MQP    DI+A ++LYRPGP+     +   +RKNG++ I  IHP ++      L+ET 
Sbjct: 654  KRMQPTGFNDIVAALALYRPGPMGVKAHWEYADRKNGRKPITPIHPELEEPLKEILEETY 713

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+I+YQEQ+M+I+Q ++ Y+  +AD  R+AMGKK +E +D++ E F  G   NG SK   
Sbjct: 714  GLIVYQEQIMRISQKVANYTAGQADGFRKAMGKKKREVLDQEYETFSGGMIDNGYSKDAI 773

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              ++  +  FADY FNKSHAA Y ++S+ TA++K +Y  E++AA +T   +  +K   + 
Sbjct: 774  DTLWNTILPFADYAFNKSHAAGYGLVSFWTAYLKANYTAEYMAALLTSVSNQKDKSAIYL 833

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSL 865
             D R   I+++ P VN     F+     I + L A++ VG      I+ +  +   F   
Sbjct: 834  SDCRHLGIKVLSPDVNESAFTFQSVGEDIRFGLGAVRNVGEDVVESIIASREEKGDFKDF 893

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             D+  ++D+   ++RV ESL+ AGA D  G+ R  L+   ++        +K       +
Sbjct: 894  SDYLDKIDAVAASKRVTESLIKAGAFDSLGHPRKGLVLVHEDAVDAVVATKKAAAKGQFD 953

Query: 926  IFAHEKGTFSDKITLEKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            +FA      +  +   +              E+ +LG Y SGHPLD ++  L        
Sbjct: 954  LFAGLGAEEAGDVFKVEVPDQEWERKHELALERDMLGLYVSGHPLDGFEDALDAQIDTPL 1013

Query: 984  EESV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK-EYEANFF 1032
               +        ++++  ++ S +++  R G+     T  +    + E   F
Sbjct: 1014 PTVLSGELPNNKDVKIGGIISSVERRVDRNGAPWVIATLEDQHGAQVELLVF 1065


>gi|75760293|ref|ZP_00740343.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
            israelensis ATCC 35646]
 gi|74492203|gb|EAO55369.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
            israelensis ATCC 35646]
          Length = 1108

 Score =  680 bits (1755), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1027 (35%), Positives = 587/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL           G   + + +RL+ ELNVI+RM FS YFLIV DF+++A 
Sbjct: 282  IYLRRVCEEGLRK-------RYGAPKEVHIKRLNHELNVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAERVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D F  SR  L +S+  
Sbjct: 813  ATVTALLEERKKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFXVSRTNLWKSIKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|258648347|ref|ZP_05735816.1| putative DNA polymerase III alpha subunit [Prevotella tannerae ATCC
            51259]
 gi|260851512|gb|EEX71381.1| putative DNA polymerase III alpha subunit [Prevotella tannerae ATCC
            51259]
          Length = 1256

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1138 (31%), Positives = 565/1138 (49%), Gaps = 126/1138 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA---- 65
             FVHL VHS YS+L+G  S+ N+L K  AD    +A+TD  N+    EF  +A  A    
Sbjct: 3    DFVHLHVHSQYSILDGQASIGNLLKKAVADGMQGMALTDHGNMMGVKEFYNEAKKAIGKA 62

Query: 66   ------------------------GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
                                      +PI+GC++ +       + ++      +   +++
Sbjct: 63   KESLKKAQEEGGSEEQIAKLQRAAAFKPILGCEMYVA---RRTLKDKKDKTDQSGHHLIV 119

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
            L   + GY  LI+LVS+ + +D      R     L +   EGLI+ +    G I      
Sbjct: 120  LAKNSVGYHNLIKLVSKAW-VDGFYMRPRTDHEELAKY-REGLIVCSACLGGEIPSNILK 177

Query: 162  NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-------------RYRESQVVQLAYTHE 208
            +    A++    FK +FGD  Y+ LQRH   D                   ++QLA   +
Sbjct: 178  DDIDKAKEAARWFKSIFGDDYYLELQRHEVKDPSIQANREVYGLQTKVNEVLIQLAKELD 237

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
            + L+ +N+  F++EED EAHD L+ ++    +    R   T   + K + EM  IF D+P
Sbjct: 238  IKLICSNDVHFVNEEDGEAHDRLICLSTGKDLDDPKRLLYTKQEWFKTQREMNKIFEDIP 297

Query: 269  EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE---------------------- 306
            EA+ NT+EI  +       HAPI+P F   E    ++E                      
Sbjct: 298  EAMRNTIEICNKVELYSIDHAPIMPNFPIPESFGTEEEYRSRLTEEDLFNEFTRDENGKE 357

Query: 307  -------------------------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
                                     E + L   A  G + R  +        + + ++R+
Sbjct: 358  IVSREEGLKKIEKLGGFNRLYRIKFEADYLAKLAYDGAKRRYGEPL------SDEVKERV 411

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            +FEL+++  M F GYFLIV D+I  A+    + VGPGRGS AGS  AY L IT IDP+++
Sbjct: 412  NFELHIMKVMGFPGYFLIVQDYINTARNELGVSVGPGRGSAAGSAVAYCLGITQIDPIKY 471

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNPDR+S+PD D+DF  D R  V+++V +KYG E  A IIT+G++  K+A++D
Sbjct: 472  DLLFERFLNPDRISLPDIDVDFDDDGRGRVLQWVTDKYGAENCAHIITYGTMATKSAIKD 531

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVS--------LQAIADDSRFREARL-ADPSVDRL 511
            V R  ++P S+ +RLCKLIP+      S          AIA     REA    +P +   
Sbjct: 532  VARVERLPLSESNRLCKLIPDKLPEDSSGKSPKLTLDNAIAAIPGLREAEASDNPLLRDT 591

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAG 567
            +  +++LEG  R+   HA G +I    +S  VP+      +       TQ+  + IE+ G
Sbjct: 592  IRYARQLEGNVRNTGVHACGFIICKDKISDWVPISTADDKETGEKLRCTQYEGRVIEETG 651

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            LIK DFLGLK L++++++L+ +    G+ +D+  I   D  TY L +   T+G FQ ES+
Sbjct: 652  LIKMDFLGLKNLSIIKEALENIKLSLGIDLDIDKIDISDKATYQLFSDGNTIGTFQFEST 711

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
            GM+  L  +QP   ED+IA+ +LYRPGP+  I  +  RK G+E I    P ++  LKET 
Sbjct: 712  GMQGHLRNLQPSTFEDLIAMNALYRPGPMQYIPKFIQRKKGEETITYDLPCMEKYLKETY 771

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+ +YQEQVM +++ ++ ++  E+D LR+AMGKK+ ++++    +FISG   NG  + I 
Sbjct: 772  GITVYQEQVMLLSREIANFTRGESDTLRKAMGKKLIDKLNHMYPKFISGGKANGYDEKIL 831

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              I++    FA Y FNKSHA  Y+ I+YQT ++K +YP +++A +M+  + N+ +I KF 
Sbjct: 832  EKIWDDWKAFASYAFNKSHATCYSWIAYQTGYLKANYPSQYMAGAMSRALSNITEITKFM 891

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDS 864
             ++++  I  + P +N   + F V     I + L AIKGVG+    +I++    +  F  
Sbjct: 892  DESKRMGINTLGPDINESLMKFSVNHRGDIRFGLGAIKGVGSQAVENILKEREVNGQFSD 951

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS-------LDNIQKYAQWVEK 917
            + +   R++    NR+ LE+L  AGA D FG +R Q ++        LD + +Y    + 
Sbjct: 952  IYNVMERINLTTCNRKTLENLAIAGAFDSFGIAREQFVEIDESGGDFLDALIRYGTQYKI 1011

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFS-VENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
            +++    ++F  E      K      S    +  R   E+ ++G Y SGHPLD YK IL 
Sbjct: 1012 DQSQAQNSLFGEEAAAIITKPLPAPVSQPWTNLERLNKERDLIGIYISGHPLDKYKIILN 1071

Query: 977  KMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            K+      +   +  +   +I    +V   ++  T++    G +   +    YE  F+
Sbjct: 1072 KVCTTTVADLDNLNALADQDISFGGIVTDTREGMTKRDKPYGVIKLEDYKGAYELMFW 1129


>gi|118479750|ref|YP_896901.1| DNA polymerase III DnaE [Bacillus thuringiensis str. Al Hakam]
 gi|118418975|gb|ABK87394.1| DNA polymerase III catalytic subunit, DnaE type [Bacillus
            thuringiensis str. Al Hakam]
          Length = 1108

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1027 (35%), Positives = 579/1027 (56%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PI
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  +                  +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSE-----------QEEKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    +    AE     ++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDEESQAEAVARAYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPAFMSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS  PEA++NT+ IA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIRIAERCQVEIPFHVNQLPKFPVP----SNETSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL+          G   + +  RL+ EL+VI+ M FS YFLIV DF+++A 
Sbjct: 282  IYLRRVCEEGLQK-------RYGTPKEVHINRLNHELSVISSMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIRFIVQKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+ VLGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|311069419|ref|YP_003974342.1| DNA polymerase III DnaE [Bacillus atrophaeus 1942]
 gi|310869936|gb|ADP33411.1| DNA polymerase III DnaE [Bacillus atrophaeus 1942]
          Length = 1113

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1026 (36%), Positives = 588/1026 (57%), Gaps = 37/1026 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQVHS YSLL  A ++  ++ +       ++A+TD + ++ A++F +   A GI+P
Sbjct: 2    SFVHLQVHSGYSLLNSAAAVEELVKEADTLGYTSLALTDDHVMYGAIQFYKACKARGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    +   +N                +VLL  +  GYQ L+++ S +    Q K   
Sbjct: 62   IIGLTASVFTDENEV----------EACPLVLLAKSNMGYQNLLKISSVL----QSKSKE 107

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
             +   WL+    EG+I +T G  G I+          AE+  L  + +FG D  Y+  Q 
Sbjct: 108  GLKQKWLKSY-REGIIAITPGEKGYIETLLEAGLYDKAEQSALELQSVFGTDAFYLGYQP 166

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +G  +     +++L+    +P+ AT +  ++ +ED  A+  L A+     ++  +R   
Sbjct: 167  FKGN-QALSDHILRLSAKTGIPVAATGDVHYIRKEDKTAYRCLKAIKAGEKLADLNREE- 224

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            TPD  LK+  EM   + + PEAL  +V+IA +C   + +    LP F   +     K  +
Sbjct: 225  TPDLDLKSIEEMRMFYQEHPEALSASVQIAEQCHVDVNLGQTRLPSFPAPDG----KPAD 280

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L     +G++              +   +RL +EL+VI RMKFS YFLIV DF+++A 
Sbjct: 281  EYLAELCFSGMKE-------RFKSPDERVIRRLQYELDVIKRMKFSDYFLIVWDFMKYAH 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N I  GPGRGS AGS+ AY L IT++DP++ +LLFERFLNP+R+SMPD DIDF   RRD
Sbjct: 334  ENGIVTGPGRGSAAGSLVAYVLYITNVDPIKHNLLFERFLNPERVSMPDIDIDFPDTRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+I+YV+NKYG    AQIITFG+L AKAALRDVGR   +   + D+L KLIP+ P   + 
Sbjct: 394  EMIQYVKNKYGAMHAAQIITFGTLAAKAALRDVGRVFGVNPKEADQLAKLIPSKPGVTLE 453

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                    +  +       + ++  I++K+EGL RH STHAAG+V+ + PL+ +VP+  +
Sbjct: 454  DAR-KMSPQLNQRLNESSLLSQVFSIAKKIEGLPRHTSTHAAGVVLSEEPLTGIVPLQ-E 511

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHE 607
                + +TQ+ M  +E  GL+K DFLGL+ LTL++        +  +K+D S I +DD +
Sbjct: 512  GHEGVYLTQYAMDHLEDLGLLKMDFLGLRNLTLIESIKTMIEKEEKIKIDFSSISYDDEK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL+   T G+FQLESSGMR  L  ++P  +EDI+A+ +LYRPGP++NI ++ +RK+G
Sbjct: 572  TFSLLSKGDTTGVFQLESSGMRSVLRRLKPTGLEDIVAVNALYRPGPMENIPLFIDRKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +  +   H  +  +LK+T GVI+YQEQ+M IA  ++G++L EAD+LRRA+ KK K+ +D+
Sbjct: 632  RVPVHFPHNDLKDILKDTYGVIVYQEQIMVIASKMAGFTLGEADLLRRAVSKKKKDILDR 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ G  K   S   A  +++L+ KFA+YGFN+SHA AY++I  Q A++K HYP+ F
Sbjct: 692  ERSHFVEGCLKKEYSVDTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHYPLYF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +   +T  + N +KI ++  +A+   I+I+PPSVN     F V +  + YSL A+K VG 
Sbjct: 752  MCGLLTSVIGNEDKIAQYLYEAKGNGIRILPPSVNKSSFPFTVENGAVRYSLRAVKNVGV 811

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            +  + I +A  DK F+ L DFC RV SK +NR+ +E+L+ +GA+D FG +R  LL S+D 
Sbjct: 812  SAVKDIYKARKDKKFEDLFDFCFRVPSKSVNRKTIEALILSGAMDEFGQNRATLLASIDV 871

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              ++A+    +  +    +F   + +FS K    +          + E+  LG YFS HP
Sbjct: 872  AAEHAELFSAD--DDQMGLF--LEESFSIKPKYVETEEFPLVDLLQFEKETLGIYFSSHP 927

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L  ++  L   G     ++  + +   I L A+V   +  +T+ G  + ++T S+   E 
Sbjct: 928  LSAHRDRLSARGAVPILKAQQSEKKQ-ILLGALVTKTKTIRTKTGQNMSFLTLSDETGEI 986

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 987  EAVVFP 992


>gi|229158207|ref|ZP_04286274.1| DNA polymerase III subunit alpha [Bacillus cereus ATCC 4342]
 gi|228625165|gb|EEK81925.1| DNA polymerase III subunit alpha [Bacillus cereus ATCC 4342]
          Length = 1105

 Score =  679 bits (1753), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1025 (35%), Positives = 580/1025 (56%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PIIG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++                 +VLL     GYQ L+++ S +    +      I 
Sbjct: 62   LTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    +    AE+    ++ +FG   Y++LQ H   
Sbjct: 107  KKWLVHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARMYRSMFG-NFYMSLQHHAIQ 164

Query: 193  DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250
            D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  T 
Sbjct: 165  DELLLQEKLPEFTSRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F         +  +  
Sbjct: 225  QYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----ANETNDTY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL+          G   + +  RL+ ELNVI+ M FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
               +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 454  -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL    
Sbjct: 812  VTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA                 + G    K    +    +   +   E+ VLGFY S +P  
Sbjct: 872  EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|228941783|ref|ZP_04104330.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            berliner ATCC 10792]
 gi|228974708|ref|ZP_04135274.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            thuringiensis str. T01001]
 gi|228981302|ref|ZP_04141602.1| DNA polymerase III subunit alpha [Bacillus thuringiensis Bt407]
 gi|228778502|gb|EEM26769.1| DNA polymerase III subunit alpha [Bacillus thuringiensis Bt407]
 gi|228785111|gb|EEM33124.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            thuringiensis str. T01001]
 gi|228817995|gb|EEM64073.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            berliner ATCC 10792]
 gi|326942388|gb|AEA18284.1| DNA polymerase III DnaE [Bacillus thuringiensis serovar chinensis
            CT-43]
          Length = 1108

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1026 (35%), Positives = 589/1026 (57%), Gaps = 47/1026 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108  IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTMKIAERCQVEIPFHVNQLPKFPV----SSNETSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL           G   + + +RL+ ELNVI+RM FS YFLIV DF+++A 
Sbjct: 282  IYLRRVCEEGLRK-------RYGAPKEVHIKRLNHELNVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQKSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRLPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
               Y  + +++ I    +++   +    R    + S +  +T+K  ++ ++TF +   E 
Sbjct: 920  TAQYVKLAKELEIPSLAQAMRYKK-KVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDEM 978

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 979  EAVLFP 984


>gi|228917242|ref|ZP_04080799.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            pulsiensis BGSC 4CC1]
 gi|228842443|gb|EEM87534.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            pulsiensis BGSC 4CC1]
          Length = 1105

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1025 (35%), Positives = 580/1025 (56%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PIIG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++                 +VLL     GYQ L+++ S +    +      I 
Sbjct: 62   LTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    +    AE+    ++ +FG   Y++LQ H   
Sbjct: 107  KKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFG-NFYMSLQHHAIQ 164

Query: 193  DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250
            D      ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  T 
Sbjct: 165  DELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F         +  +  
Sbjct: 225  QYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETNDMY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL+          G   + +  RL+ ELNVI+ M FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
               +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 454  -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL    
Sbjct: 812  VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA                 + G    K    +    +   +   E+ VLGFY S +P  
Sbjct: 872  EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|326440734|ref|ZP_08215468.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC
            27064]
          Length = 1146

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/1034 (31%), Positives = 519/1034 (50%), Gaps = 48/1034 (4%)

Query: 39   DQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKM----------TNQ 88
                 IA+TD  NL  A +F  +A  AGI PIIG +  +  +                  
Sbjct: 1    MGMSHIAMTDHGNLHGAYDFFHQAKGAGITPIIGIEAYVAPESRRNKRKIQWGQPHQKRD 60

Query: 89   GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLT 148
              +         +  +   G   L  L S  Y     ++  R+    + +  +EGLI  T
Sbjct: 61   DVSGSGGYTHKTIWAANRTGLHNLFRLSSDAYAEGWLQKWPRMDKETIAQW-SEGLIAST 119

Query: 149  GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYT 206
            G  SG +           A K    ++ +FG  R ++ L  H    +R     ++++   
Sbjct: 120  GCPSGELQTRLRLGQFDEALKAASEYQDIFGKGRYFLELMDHGIEIERRVRDGLLEIGKK 179

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
             ++P + TN+S +  + +  AHD L+ +     +S  DR R     Y    ++ +    D
Sbjct: 180  LDIPPLVTNDSHYTFDHEAGAHDALLCIQTGKNLSDPDRFRFDGTGYYLKSTDQM-YAID 238

Query: 267  LPEALENTVEIARRCSFILQVHAPILPRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQ 325
              +A +         +  +        + +  + +      E    + +   G+  R   
Sbjct: 239  SSDAWQEGCRNTLLVAEQIDTSGMFEAKNLMPKFEIPAGFTEVTWFQEEVRTGMARRYPG 298

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
            G        +D +++ ++E++VI  M F GYFL+VADFI WAKKN I VGPGRGS AGS+
Sbjct: 299  GV------PEDRQRQAEYEMDVIVSMGFPGYFLVVADFIMWAKKNGIAVGPGRGSAAGSI 352

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AYA+ ITD+DP+   L+FERFLNP+R+SMPD DIDF + RR EVIRYV  KYG ++VA 
Sbjct: 353  VAYAMGITDLDPIEHGLIFERFLNPERISMPDVDIDFDERRRVEVIRYVTEKYGADKVAM 412

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND---PAHPVS------LQAIADDS 496
            I T+G+++AK A++D  R L  PY+  DRL K +P D      P+S          ++  
Sbjct: 413  IGTYGTIKAKNAIKDSARVLGYPYAMGDRLTKAMPADVLGKGIPLSGILDPAHPRYSEAG 472

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
              R     +P V ++++ ++ +EGL R    HAAG+++   P++   P++      + +T
Sbjct: 473  EIRGMYENEPDVKKVIDTARGVEGLVRQMGVHAAGVIMSSEPITDHAPVWVRHSDGVTIT 532

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTK 615
            Q++    E  GL+K DFLGL+ LT++  ++  +   +G+++++  IP DD  TY LL   
Sbjct: 533  QWDYPSCESLGLLKMDFLGLRNLTIMDDAVKMVKANKGIELEMLSIPLDDPTTYELLCRG 592

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVS 673
             TLG+FQ +   MR  L  M+PD  EDI A+ +LYRPGP+       Y  RKN +++I  
Sbjct: 593  DTLGVFQFDGGPMRSLLRLMKPDNFEDISAVSALYRPGPMGMNSHTNYALRKNKQQEITP 652

Query: 674  IHPLIDPMLKE----TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            IHP ++  LKE    T G+I+YQEQV + AQ+++GYSL EAD+LRR MGKK  EE+ K  
Sbjct: 653  IHPELEEPLKEVLDVTYGLIVYQEQVQKAAQIIAGYSLGEADILRRVMGKKKPEELAKNF 712

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              F +GA KNG S      ++++L  FA Y FNK+H++AY +++Y TA++K ++P E++A
Sbjct: 713  TIFQAGARKNGYSDEAVQALWDVLVPFAGYAFNKAHSSAYGLVTYWTAYLKANHPAEYMA 772

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTT 848
            A +T   D+ +K   +  + R+  I+++PP+VN    +F   GD+ I + L+A++ VGT 
Sbjct: 773  ALLTSVKDDKDKSAVYLNECRRMGIKVLPPNVNESQSNFAAQGDDVILFGLSAVRNVGTN 832

Query: 849  TARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
                I+        + S  DF  +V+    N+R +ESL+ AGA D  G++R  L+   + 
Sbjct: 833  VVESIIRCRKSKGKYSSFPDFLDKVEVVVCNKRTVESLIKAGAFDELGHTRKGLVAHHEP 892

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKI------TLEKFSVENSSVRFENEQRVLGF 961
            +      V++       ++F       +D+                 S     E+ +LG 
Sbjct: 893  MIDNVVAVKRKEAEGQFDLFGGMGDDSADEPGFGLDVEFSDV-EWEKSYLLAQEREMLGL 951

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            Y S HPL   + +L         +        G  + +  ++   Q+K T++G+     T
Sbjct: 952  YVSDHPLFGIEHVLSDKSDASISQLTGGEHADGAVVTIGGIISGLQRKMTKQGNAWAIAT 1011

Query: 1020 FSEPAKEYEANFFP 1033
              + A   E  FFP
Sbjct: 1012 VEDLAGSIECMFFP 1025


>gi|146329848|ref|YP_001209597.1| DNA polymerase III, alpha subunit [Dichelobacter nodosus VCS1703A]
 gi|146233318|gb|ABQ14296.1| DNA polymerase III, alpha subunit [Dichelobacter nodosus VCS1703A]
          Length = 1175

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1053 (38%), Positives = 600/1053 (56%), Gaps = 47/1053 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +V L VHS YSL +  L +++I+         +IA+TD NNL++A++F Q A  A I+P
Sbjct: 3    DYVPLHVHSEYSLNDSLLRIHDIVAFAQTHDLTSIALTDRNNLYAAIKFYQCARRAKIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC L I  +               +  ++LL   A G++ L ELVS  Y  DQ    +
Sbjct: 63   ILGCDLSIRDE------------VGQIHQLILLAQNALGFRHLCELVSFAYTHDQTPNEI 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +  + L     +GLI L+GG  G + +A      + A +    ++K+F +R Y+ + R 
Sbjct: 111  AVDKTRLTAEQCQGLIALSGGEEGDVGKAIARGDRKHALQCATHWQKIFSNRFYLQIARF 170

Query: 190  RGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
               +    SQ + ++     +  VATN + F +  D++ H+  + +A    +    R  R
Sbjct: 171  GQTEPPLFSQNLAEIGQKLRIAAVATNLACFKTAADFDYHEARVCIASGDTIDNPKRVRR 230

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             TP H+L+   ++  IF+D P+ L NT  IA+RC+ +L +    LP F   EC DI    
Sbjct: 231  FTPQHHLRAPQDLAQIFADAPQLLVNTELIAQRCNVVLSLGKHYLPDFPLPECIDI---- 286

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADFI 364
            E  L  +A  GLE RL Q        A+    Y++RL  EL VI RM+F GYFLIVADFI
Sbjct: 287  ERYLVQEAERGLEERLVQLFPDPQIRAEKTALYQERLQTELAVINRMQFPGYFLIVADFI 346

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            QWAK +++PVGPGRGSGAGS+ A+ L IT++DP+ + LLFERFLNP+R+SMPDFD+DFC 
Sbjct: 347  QWAKNHDVPVGPGRGSGAGSLVAFCLKITELDPMAYDLLFERFLNPERVSMPDFDVDFCM 406

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            ++RD+VIRYV +KYGH++V+QI T G++ AKA +RDVGR L +PY  VD++ K++PN   
Sbjct: 407  NKRDDVIRYVADKYGHDKVSQIATHGTMAAKAVIRDVGRVLSLPYPVVDKISKMVPNTLG 466

Query: 485  HPVSL----------QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
              +                  +   +    D  V  L++I+  LEGL R+   HA G+VI
Sbjct: 467  VTLPDALGKTEKSRTHPEFFSAELTKRYEEDEEVKYLIDIALPLEGLARNVGKHAGGVVI 526

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
                L+    +Y +      VTQF+ + IE AGL+KFDFLGL+TLT++  ++  + Q   
Sbjct: 527  APTTLTDFSALYCEHAGSALVTQFDKEDIEAAGLVKFDFLGLRTLTVIDWAVQNVNQYAP 586

Query: 595  KV---DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                 D+  I  DD  T+ LL +  T  +FQLESSGM+  +  +QPD  ED+IALV+L+R
Sbjct: 587  ANEKLDIRQIRDDDEATFQLLKSGKTTAVFQLESSGMKNLIAKLQPDNFEDLIALVALFR 646

Query: 652  PGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+ + +   + NRK+G+ K+V  HP +  +LK T GV++YQEQVMQ+AQ+L+ YSL E
Sbjct: 647  PGPLQSGMVDDFINRKHGRAKVVYPHPALAEILKNTYGVMVYQEQVMQVAQILAKYSLGE 706

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD+LRRAMGKK  EEM KQK  F++ AS  G+ + +A++IF+L+AKFA+YGFNKSH+AAY
Sbjct: 707  ADLLRRAMGKKKPEEMAKQKGTFVARASAGGVDEQVAIDIFDLMAKFAEYGFNKSHSAAY 766

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++SYQTAW+K HYP  F+AA +T EMD  EKI     +  +  ++I+PPS+N    DF 
Sbjct: 767  ALLSYQTAWLKAHYPAAFMAAVLTSEMDKTEKIVLLIDECHEMGLRILPPSINHSAYDFT 826

Query: 830  VG-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            +     I + L AIKGVG      I+ E      F SL D C R+D K L R+ LE+L++
Sbjct: 827  INQQGEILFGLGAIKGVGQAVIEQILAERRRGGAFQSLTDLCQRLDLKTLKRKTLETLIY 886

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF-SDKITLEKFSVE 946
            AGA D    +R  L   L    K A+   +++ N+  N+F+          + L   +  
Sbjct: 887  AGAFDLIEKNRGALFAVLPQALKLAEQYHQDKKNRQTNMFSLLDAAHCEAHLALNPENSW 946

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN--------IRLA 998
                +   E+ VLG + SGHP  V   ++R +  K   E    +              L 
Sbjct: 947  QPQQQLMWEKSVLGLFLSGHPAQVAAEMIRPICPKNIAEIQHELNQKTPHQGEYHFFYLG 1006

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             ++V K+   ++KG    ++T  + + + E   
Sbjct: 1007 GLLVDKRNITSKKGKNFCFITIDDCSGKIEIAV 1039


>gi|229032249|ref|ZP_04188222.1| DNA polymerase III subunit alpha [Bacillus cereus AH1271]
 gi|228729029|gb|EEL80032.1| DNA polymerase III subunit alpha [Bacillus cereus AH1271]
          Length = 1105

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1025 (35%), Positives = 581/1025 (56%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPIIG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPIIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  +++                +VLL     GYQ L+++ S +    +      I 
Sbjct: 62   LTASIFSEED-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    +    AE+    ++ +FG   Y++LQ H   
Sbjct: 107  KKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESEAEELARMYQSMFG-NFYMSLQHHAIQ 164

Query: 193  DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250
            D      ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  T 
Sbjct: 165  DELLLQEKLPAFMSRINVPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F         +  +  
Sbjct: 225  QYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHINQLPKFPVP----ANETNDMY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL+          G   + + +RL+ ELNVI+ M FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLQK-------RYGTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
               +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 454  -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVEKTGTQIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL    
Sbjct: 812  VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGISRTNLWKSLKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA                 + G    K    +    +   +   E+  LGFY S +P  
Sbjct: 872  EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|228929651|ref|ZP_04092669.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            pondicheriensis BGSC 4BA1]
 gi|228830038|gb|EEM75657.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            pondicheriensis BGSC 4BA1]
          Length = 1105

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1025 (35%), Positives = 580/1025 (56%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PIIG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++                 +VLL     GYQ L+++ S +    +      I 
Sbjct: 62   LTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    +    AE+    ++ +FG   Y++LQ H   
Sbjct: 107  KKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFG-NFYMSLQHHAIQ 164

Query: 193  DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250
            D      ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  T 
Sbjct: 165  DELLLQEKLPAFMNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F         +  +  
Sbjct: 225  QYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETNDMY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL+          G   + +  RL+ ELNVI+ M FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLQK-------RYGTPKEVHINRLNHELNVISSMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
               +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 454  -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLESSGMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +K+ ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKVVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL    
Sbjct: 812  VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA                 + G    K    +    +   +   E+ VLGFY S +P  
Sbjct: 872  EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|229186859|ref|ZP_04314014.1| DNA polymerase III subunit alpha [Bacillus cereus BGSC 6E1]
 gi|228596596|gb|EEK54261.1| DNA polymerase III subunit alpha [Bacillus cereus BGSC 6E1]
          Length = 1104

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1025 (35%), Positives = 579/1025 (56%), Gaps = 50/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PIIG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++                 +VLL     GYQ L+++ S +    +      I 
Sbjct: 62   LTASIFSEE------------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 105

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    +    AE+    ++ +FG   Y++LQ H   
Sbjct: 106  KKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMFG-NFYMSLQHHAIQ 163

Query: 193  DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250
            D      ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  T 
Sbjct: 164  DELLLQEKLPAFINRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 223

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F         +  +  
Sbjct: 224  QYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETNDMY 279

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL+          G   + +  RL+ EL+VI+ M FS YFLIV DF+++A +N
Sbjct: 280  LRRVCEEGLQK-------RYGTPKEVHINRLNHELSVISSMGFSDYFLIVWDFMKYAHEN 332

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 333  HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEM 392

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 393  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 452

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
               +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 453  -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 510

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +T+
Sbjct: 511  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIRFIVQKTGKEIDIRNLPLQDEKTF 570

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 571  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 630

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 631  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 690

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 691  KHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 750

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 751  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 810

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL    
Sbjct: 811  VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKGAL 870

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA                 + G    K    +    +   +   E+ VLGFY S +P  
Sbjct: 871  EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 917

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 918  QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDEME 975

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 976  AVLFP 980


>gi|145296091|ref|YP_001138912.1| DNA polymerase III subunit alpha [Corynebacterium glutamicum R]
 gi|140846011|dbj|BAF55010.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 1194

 Score =  678 bits (1749), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/1073 (29%), Positives = 522/1073 (48%), Gaps = 51/1073 (4%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            ++ K  SFVHL  H+ +S+L+G   ++ + D++ A   PA+ ITD  N++ +  F +K  
Sbjct: 6    HMAKQSSFVHLHNHTEFSMLDGMAKIDMLADEVKAQGMPAVGITDHGNMYGSNPFYRKMT 65

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTN----------QGKTPFPTVPSIVLLVSTAEGYQRLI 113
              GI+PIIG +  +  +   K                +         +L     G + L 
Sbjct: 66   EMGIKPIIGIETYMAPESRFKKERVRWGEPHQKSDDVSGSGAYLHQTMLAENTTGLRNLF 125

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             L S      Q  +  R+    + E   EG+I  TG  SG +           A +    
Sbjct: 126  YLSSMASYEGQLGKWPRMDADIIAER-AEGIIATTGCPSGDVQTRLRLGQFDEALEAAAM 184

Query: 174  FKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            ++ ++G D  ++ L  H    +    S+++++     LP + TN+  ++ E   +AH+ +
Sbjct: 185  WQDIYGRDNYFLELMDHGLDIETRVRSELLEIGRKLNLPPLVTNDCHYVLESQAQAHEAM 244

Query: 232  MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA--LENTVEIARRCSFILQVHA 289
            + V     +  +DR +     Y    +E +    D       +NT+ IA R     ++  
Sbjct: 245  LCVQTGKTLHDEDRFKFGGTGYYVKSAEQMRALWDDMVPDGCDNTLWIAERVQSYDEIWE 304

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                  +            + L ++ +AGL+        +     +DY +R ++E++VI 
Sbjct: 305  EHSHDRMPIADVPEGHTPTSWLHHEVMAGLK-----DRFSGQQVPEDYIERAEYEISVID 359

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
               +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LLFERFLN
Sbjct: 360  MKGYPSYFLIVAELIKHARSIGIRVGPGRGSAAGALVAYALTITNIDPMEHGLLFERFLN 419

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            P+R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K AL+D  R      
Sbjct: 420  PERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQALKDSARVQMGQP 479

Query: 470  SQVDR---LCKLIPNDPAHPVSLQAI--ADDSRF------REARLADPSVDRLLEISQKL 518
                    + +L P   A  + L  I   D  RF      R+    DP V R+ + ++ L
Sbjct: 480  GYQIADRVIKELPPAIMAKDIPLSGITDPDHPRFNEAGAVRQLIETDPDVKRIYDTARGL 539

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EG+ R +  HA  +++   PL   +PM++       +T ++    E  GL+K DFLGL+ 
Sbjct: 540  EGVVRQSGVHACAVIMSSVPLLDCIPMWKRPADGALITGWDYPACEAIGLLKMDFLGLRN 599

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPF--DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            LT++  +++ +        L L     +D ETY LL    TLG+FQL+  GM++ L+ MQ
Sbjct: 600  LTVIGDAIENIKANRDGEVLDLENLAIEDEETYKLLGRGETLGVFQLDGGGMQELLKRMQ 659

Query: 637  PDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHP----LIDPMLKETQGVII 690
            P    DI+A ++LYRPGP+  +    Y +RKNG++ I  IHP     ++ +L ET G+I+
Sbjct: 660  PTGFNDIVAALALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEALEEILGETYGLIV 719

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQ+M+I+Q ++ Y+  +AD  R+AMGKK  E ++K+   F  G   NG S      ++
Sbjct: 720  YQEQIMRISQKVANYTAGQADGFRKAMGKKKPEVLEKEFANFEGGMKANGYSDAAIKTLW 779

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            + +  FA Y FNKSHAA Y ++S+ TA++K HY  E++AA +T   DN +K   +  D R
Sbjct: 780  DTILPFAGYAFNKSHAAGYGLVSFWTAYLKAHYAPEYMAALLTSVGDNKDKSAIYLSDCR 839

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFC 869
               I+++ P +N   ++F      I Y L AI+ VG      I++   +   F    D+ 
Sbjct: 840  HLGIRVLSPDINESSLNFLPVGTDIRYGLGAIRNVGAEVVDSILDTRKEKGLFKDFSDYL 899

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             ++D+   N+R+ ESL+  GA D  G++R  L+   ++        +K       ++FA 
Sbjct: 900  DKIDTLPCNKRITESLIKGGAFDSLGHARKGLMLVFEDAVDSVIATKKAADKGQFDLFAA 959

Query: 930  EKGTFSDKI------TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                 +D +      T+      +       E+ +LG Y SGHPLD Y+  +        
Sbjct: 960  FDSDNNDDVASFFQITVPD-DEWDRKHELALEREMLGLYVSGHPLDGYEDAIAAQVDTAL 1018

Query: 984  EESV--ATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAK-EYEANFF 1032
               V      G  + +  ++    ++ ++K GS    VT  +      E   F
Sbjct: 1019 TTIVAGELKHGAEVTVGGIISGVDRRFSKKDGSPWAIVTIEDHNGASVELLVF 1071


>gi|228954873|ref|ZP_04116893.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            kurstaki str. T03a001]
 gi|228804862|gb|EEM51461.1| DNA polymerase III subunit alpha [Bacillus thuringiensis serovar
            kurstaki str. T03a001]
          Length = 1105

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1025 (36%), Positives = 587/1025 (57%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+IG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++                 +VLL     GYQ L+++ S +    +      I 
Sbjct: 62   LTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H   
Sbjct: 107  KKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAIQ 164

Query: 193  DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250
            D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  T 
Sbjct: 165  DELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F         +  +  
Sbjct: 225  QYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSDIY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL           G   + + +RLD ELNVI+RM FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLRK-------RYGEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
               +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 454  -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+    
Sbjct: 812  VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA                 + G    K    +    +   +   E+ VLGFY S +P  
Sbjct: 872  EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|229152799|ref|ZP_04280982.1| DNA polymerase III subunit alpha [Bacillus cereus m1550]
 gi|228630619|gb|EEK87265.1| DNA polymerase III subunit alpha [Bacillus cereus m1550]
          Length = 1105

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1025 (36%), Positives = 586/1025 (57%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+IG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++                 +VLL     GYQ L+++ S +    +      I 
Sbjct: 62   LTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H   
Sbjct: 107  KKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAIQ 164

Query: 193  DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250
            D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  T 
Sbjct: 165  DELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F         +  +  
Sbjct: 225  QYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSDIY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL           G   + + +RLD ELNVI+RM FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLRK-------RYGEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
               +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 454  -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFIQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+    
Sbjct: 812  VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA                 + G    K    +    +   +   E+  LGFY S +P  
Sbjct: 872  EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|229129888|ref|ZP_04258854.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-Cer4]
 gi|228653579|gb|EEL09451.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-Cer4]
          Length = 1105

 Score =  678 bits (1748), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1025 (35%), Positives = 585/1025 (57%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+IG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++                 +VLL     GYQ L+++ S +    +      I 
Sbjct: 62   LTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H   
Sbjct: 107  KKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAIQ 164

Query: 193  DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250
            D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  T 
Sbjct: 165  DELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F         +  +  
Sbjct: 225  QYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSDIY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL           G   + + +RLD ELNVI+RM FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLRK-------RYGEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
               +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 454  -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A +   ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKIGKEIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+    
Sbjct: 812  VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA                 + G    K    +    +   +   E+  LGFY S +P  
Sbjct: 872  EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|254456520|ref|ZP_05069949.1| DNA polymerase III, alpha subunit [Candidatus Pelagibacter sp.
            HTCC7211]
 gi|207083522|gb|EDZ60948.1| DNA polymerase III, alpha subunit [Candidatus Pelagibacter sp.
            HTCC7211]
          Length = 1138

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/1041 (39%), Positives = 642/1041 (61%), Gaps = 34/1041 (3%)

Query: 5    LEKSP--SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            + +S   +F HL++H+ YS+ EGA+ ++++ D   +++  ++A+ DT+NL  ALEF++K 
Sbjct: 1    MAESAIQNFNHLKIHTQYSICEGAVKIDDLQDFAKSNKIKSLALCDTSNLCGALEFAEKI 60

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               G QPI+G Q++    D + +             + L     +GY+R+I+L S  +L 
Sbjct: 61   SKVGTQPIVGTQINFKFGDTVGL-------------LPLFSLNEKGYKRIIKLSSLSFLE 107

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +       +  + L E   EG+ + +G + G     F                  F DR 
Sbjct: 108  NDKLSDPHVDFNNLLE-NNEGVAIFSGTTFGLFGELFNKGKFTEIHDLYKKLNSTFDDRF 166

Query: 183  YVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +QRH   +     +  +  +   ++P++ATN   +++++ +EAHD L+ + + T ++
Sbjct: 167  YIEIQRHNDQNELGFEKFNLNKSLELKIPIIATNEVFYINQDMHEAHDALICIGNKTYIN 226

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            +K+R  ++  HY K+ SEM  +F+DLPEALEN      RC+F      PILP    +E  
Sbjct: 227  EKNRKHLSNQHYFKSNSEMSELFADLPEALENNYNFPLRCNFRPLFSNPILPNISSEEG- 285

Query: 302  DIQKEEENELRNKAVAGLEVRL------AQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                  ++ L+  +++GL+++        +  +    +  DY+ RL+ EL++I  MK+S 
Sbjct: 286  ---GNADDLLKKDSLSGLKIKFNKIFGIKENELDNDKNYLDYKDRLNHELSIIIEMKYSS 342

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV+D+I+WAK N+IPVGPGRGSGAGS+ A+ L+ITD+DP++F+L+FERFLNPDR+SM
Sbjct: 343  YFLIVSDYIKWAKNNDIPVGPGRGSGAGSLVAWCLSITDVDPIKFNLIFERFLNPDRISM 402

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PDFDIDFC+++RD V  Y+  KY  + VA IITFG L+A+  +RDVGR L +PY  VD +
Sbjct: 403  PDFDIDFCEEKRDLVFEYLTKKYQ-DSVAHIITFGKLKARMVVRDVGRVLGLPYGFVDSI 461

Query: 476  CKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             K+IP DP+ P +  Q I+ + R ++    D  V +L ++S KLEGL R+ +THAAG+VI
Sbjct: 462  SKMIPFDPSRPQTLTQCISGEPRLQKLINEDQRVKKLTDLSLKLEGLNRNVATHAAGVVI 521

Query: 535  GDRPLSQLVPMYRDVRSDLPV--TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
             D+ L+++VP+Y+D  S+L +  TQF+M   E AGL+KFDFLGLKTLT++  +   + + 
Sbjct: 522  ADKKLTEVVPLYKDASSELLLPSTQFDMYSAENAGLVKFDFLGLKTLTVINNTQKLVKKI 581

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                D+  I ++D + + LL++  T+G+FQ+ESSGMR+AL  M+P+ IEDIIALV+LYRP
Sbjct: 582  DKNFDIEKISYEDQKVFELLSSGNTVGLFQVESSGMREALVQMKPNHIEDIIALVALYRP 641

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP+ NI  YN+ K+G++    +HPL++ +LK T GVIIYQEQVMQIAQ LSG++  +AD+
Sbjct: 642  GPMSNISTYNDCKHGRQTPDYLHPLLEDILKPTYGVIIYQEQVMQIAQKLSGFTAGQADL 701

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK + E++KQK+ FI+GA +NGI+K +A  IF  +  FA+YGFNKSHAAAYA+I
Sbjct: 702  LRRAMGKKKRAELEKQKQGFIAGAVQNGIAKDVAAGIFLKIEPFAEYGFNKSHAAAYAII 761

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SYQTA++KT+YP EF+AASMT+++ N  K+ +F ++ ++ NI+++ P++N    DF+   
Sbjct: 762  SYQTAFLKTYYPKEFIAASMTMDISNQNKLSEFYEELKRLNIKVVRPNINECYADFRTEG 821

Query: 833  NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            ++ YY+L  IK VG     ++++    +  FDS+ DF  RV+ K +N+  LE LV AGA 
Sbjct: 822  DKFYYALGGIKAVGYEAISNVIKERSENGKFDSINDFLKRVNPKDMNKLQLEGLVKAGAF 881

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R  L  S+ N     + +  N++    ++F+ ++   +D          N   R
Sbjct: 882  DNLNNNRQSLFNSIPNFILKTKNIFDNKSANQIDLFSEDESLQNDITH--DIEDWNFEER 939

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               E   +GF+ S HPL+ +  I     IK Y    +     +  +AA ++  Q++KT K
Sbjct: 940  LSKEFEAVGFFISNHPLNQFTEIFDDYKIKDYSNFNSNDEIKDANIAATLLKLQERKTAK 999

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G+    +  ++    +E   F
Sbjct: 1000 GNAYAVLKLTDLNSVFELFIF 1020


>gi|229198755|ref|ZP_04325451.1| DNA polymerase III subunit alpha [Bacillus cereus m1293]
 gi|228584688|gb|EEK42810.1| DNA polymerase III subunit alpha [Bacillus cereus m1293]
          Length = 1105

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1025 (35%), Positives = 580/1025 (56%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GI PIIG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++                 +VLL     GYQ L+++ S +    +      I 
Sbjct: 62   LTASIFSEEE-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    +    AE+    ++ +FG   Y++LQ H   
Sbjct: 107  KKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVARMYQNMFG-SFYMSLQHHAIQ 164

Query: 193  DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250
            D      ++        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  T 
Sbjct: 165  DELLLQEKLPAFMNRINIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +YLK+  EM ++FS + EA+ NTVEIA RC   +  H   LP+F         +  +  
Sbjct: 225  QYYLKSSDEMEALFSHVEEAIYNTVEIAERCRVEIPFHVNQLPKFPVP----SNETNDMY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL+          G   + + +RL+ ELNVI+ M FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLQK-------RYGTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
               +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 454  -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVQKTGKEIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +I  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  QIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL    
Sbjct: 812  VTALIEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA                 + G    K    +    +   +   E+ VLGFY S +P  
Sbjct: 872  EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLAKELEIPTLAQ--AMRHKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|194306037|dbj|BAG55471.1| putative DNA polymerase III, alpha subunit [uncultured bacterium]
          Length = 1317

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/1101 (31%), Positives = 565/1101 (51%), Gaps = 81/1101 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    +FVHL VHS YSLL+G   +N+++++     QPAIA+TD   ++  + F +   +
Sbjct: 1    MSDQGTFVHLHVHSEYSLLDGLSRINDLVERAVELGQPAIALTDHGAMYGTMPFYRACKS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++PIIG +  + M+       Q          +++L +   GY  L+E+ SR  L D 
Sbjct: 61   GGVKPIIGIETYLAMRSMQDKDAQ---RDKERFHMLMLAANQTGYMNLLEVASRAQL-DG 116

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                 RI  +++    +EG+I  TG  +  I RA    +  +A+K +  +  +FG DRL+
Sbjct: 117  YYYKPRIDRNFMAA-HSEGIIATTGCMAAEIPRAIGAGNMALADKLMGEYVDIFGTDRLF 175

Query: 184  VNLQRHRGYD-RYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            V LQ H   +      +++++A    L    +ATN+  +    D   H+VL+ +   + V
Sbjct: 176  VELQEHSIPELTTINQKLIEMAPRFGLQNNFLATNDVHYTRAADANPHEVLLCIQTGSTV 235

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI--LPRFIEK 298
            +          +YLK+  EM ++F       +  +   R    I+++         +   
Sbjct: 236  NAPKLTFSDKGYYLKSYDEMFNLFRQNGYPEDIVLNSLRNSLAIVEMCDVNLDSKGYHLP 295

Query: 299  ECD-DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            E D     +    LR+    GL  R  +    +  + +D R RL+ ELN+I RM F  YF
Sbjct: 296  EFDVPEGYDAHGYLRHLCEQGLIWRYGE---ERARNDEDLRARLEHELNIITRMGFDTYF 352

Query: 358  LIVADFIQWAKKNNIP---------------------VGPGRGSGAGSVTAYALTITDID 396
            LIV D  +WA +++                           RGSGAGSV AY L IT ID
Sbjct: 353  LIVWDLCEWAVRSDAWWETHGDPYPYESYTDWKEHDIWWNVRGSGAGSVVAYTLGITSID 412

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            PL   L+FERFLNP R+SMPD D+D+  D R +++ Y + +YG E+VAQIITFG++ A+A
Sbjct: 413  PLVNGLIFERFLNPGRVSMPDIDLDYPDDVRGQMVAYTKRRYGEEKVAQIITFGTMGARA 472

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD------DSRFREARLADPSVDR 510
            A+RDVGRAL MP   VD + +L+P  P  PV ++ + D       +   +    + +V  
Sbjct: 473  AIRDVGRALDMPLPDVDGVARLVPAIPGKPVKIKNVLDPDHEFYSAELTDRYKRESAVKT 532

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD------LPVTQFNMKWIE 564
            LL+ +  LEG+ RHAS+HAAG+++ DRPL + VP+ R    D        VTQ+ M+ +E
Sbjct: 533  LLDTATNLEGVARHASSHAAGVIVSDRPLQEYVPLNRPTSGDEGLGGVDRVTQWPMEIVE 592

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD------------DHETYHLL 612
              GL+K DFLGL TLT+++++   + +R   V                        + +L
Sbjct: 593  SIGLLKVDFLGLSTLTVMRRAARLIEERYGTVYTMDNIPYDEGHIGPDPERDPELLFDML 652

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN-----G 667
                  G+FQ+E +GMR+ +  M+P   + IIA +SLYRPGP++NI  Y  R +      
Sbjct: 653  GRGDVAGVFQVEGAGMRRLMMEMKPRRFDHIIAAISLYRPGPMENIPEYIRRMHSSIYDN 712

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K+ +    P ++P+LK+T G+++YQEQ+++IA  L+GY+  +AD++R+A+ KK K+ M++
Sbjct: 713  KDIVEYHTPALEPILKDTYGILVYQEQIIRIASDLAGYAPGDADMIRKAVAKKKKKLMEE 772

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             + +F  GA + G S+ +   I+  +  FA YGFNK+HAA YA ++ QTA++K HYPVE+
Sbjct: 773  HRIKFTEGAMERGFSREVCEAIWGDIEFFARYGFNKAHAADYAKVTCQTAFLKAHYPVEY 832

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIK 843
            LAA +++E DN EK++++  +A+   I I PP +N   +DF + D+     I + L AIK
Sbjct: 833  LAAMLSVERDNTEKVRRYFAEAKNLGIDIEPPDINRSDLDFTIEDDHERPCIRFGLGAIK 892

Query: 844  GVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
              G      I+ E  A+  F  L+D   RVD +++ +R LE ++ A   + +G +  Q L
Sbjct: 893  NAGEAALNLILDERRANGTFADLQDLSERVDLRRVGKRALEFMIKARVFERWG-TMPQFL 951

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI----------TLEKFSVENSSVRF 952
            ++LD I   +    +       ++F    G+                ++           
Sbjct: 952  EALDRIVADSSKTHEAAAAGQMSLFGALGGSNGGNGGMKLTADLLKPVDSLEPIPHKQML 1011

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            E E+  LG + S HP++    +L             T+ G  +R+A M+ + +   T+KG
Sbjct: 1012 EWEKEALGVHVSEHPMERPLAMLTSHTSATIGGLDITMNGKQVRIAGMISTLRTLTTKKG 1071

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
              + + T  +   + +   FP
Sbjct: 1072 DPMAFATLEDMDNKIDLVLFP 1092


>gi|193215617|ref|YP_001996816.1| DNA polymerase III subunit alpha [Chloroherpeton thalassium ATCC
            35110]
 gi|193089094|gb|ACF14369.1| DNA polymerase III, alpha subunit [Chloroherpeton thalassium ATCC
            35110]
          Length = 1190

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1073 (33%), Positives = 556/1073 (51%), Gaps = 62/1073 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              F+HL  H+ YS+    +    +  +       A+ +TD +++F+  E    A    ++
Sbjct: 2    SEFIHLHTHTHYSMQSSTIMPGELFAECQKLDMAAVGVTDYSSMFNMPELFSYAKKHEVK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG +L +            +     +  ++LLV    GY+ L +++S        KQ 
Sbjct: 62   LIIGAELFLVPG------AMTEKKEQVLYHLILLVKNETGYKNLCKILSAAARDGFYKQM 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R   + +Q+   EGLI LT    G + +    +    A   +  +K LF D  Y+ +  
Sbjct: 116  PRADFNLIQK-NAEGLICLTACREGELSQYILKDEIDKARDFVARYKNLFQDDFYIEMHS 174

Query: 189  HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D  R ++  + LA    + LVATN+  +L +ED +  D L A+ +   +S  +R R
Sbjct: 175  HNAPDDARLNEAKIALAKEFGIKLVATNDVHYLKKEDAQYQDALQALKNKQTLSSPNRNR 234

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
              T   YLK   EM  +F +    L NT+EIA +C+F+     P LP F         + 
Sbjct: 235  LPTEHFYLKTPDEMARMFDNAQGELVNTLEIAEKCTFVFNDQQPHLPHFPIPSEF---EN 291

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +E  LR+    G +        A G    + R+R+++EL++I +M ++ YFLIV+D I  
Sbjct: 292  DEAYLRHLTYEGAKK-KYGDLDAMGEKGAEVRERIEYELSIICKMGYATYFLIVSDLISA 350

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            +++    VGPGRGS AGS+ AY   IT +DP+++ LLFERFLNP+R+SMPD DIDF    
Sbjct: 351  SREMGYSVGPGRGSAAGSIVAYLTNITQVDPIKYKLLFERFLNPERVSMPDIDIDFTPVG 410

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            +  V+ Y   KYG   VA++I  G+L AKAA+RDVGR L +    VD++ KL+P  P   
Sbjct: 411  KQRVLDYTIKKYGAASVAKVIAVGTLGAKAAIRDVGRVLDINLQTVDKIAKLVPGKPGMT 470

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +S  A             +  + +L++ ++ LEG  R+ S HAA +V+ D P+ ++VP+Y
Sbjct: 471  LSKAADQVKEFAELESSPEQKIQKLMKFAKALEGRARNVSMHAAAVVVTDGPVEEVVPLY 530

Query: 547  ----------------------------RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                                                VTQF+  WIEKAGL+K D+LGL+T
Sbjct: 531  VSNKIETEERRYIDEFDEKSEKEKGKGKSGDDQKQVVTQFDKDWIEKAGLLKIDYLGLET 590

Query: 579  LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            L ++ ++L  + +R  V +DL  +P DD + Y +       GIFQ ES GM+Q +  ++P
Sbjct: 591  LAVVDETLRLIQKRYGVTIDLESVPIDDKKAYKIFQEGKMAGIFQFESQGMQQYMMKLRP 650

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNR--------KNGKEKIVSIHPLIDPMLKETQGVI 689
              I DIIA+ +LYRPG ++  +  N          KNG+EKI  +HP++  +L+ET GVI
Sbjct: 651  TVIGDIIAMSALYRPGALNARIDENRNAVDLFVDRKNGREKIEYMHPMLAEILEETYGVI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVM ++Q++ G+SL++AD LR+AMGKK  E M K K+ F+ GA +  + K +A  I
Sbjct: 711  VYQEQVMLVSQVMGGFSLAKADNLRKAMGKKKPEIMAKFKDEFVEGAVEKSVDKAVATGI 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            F+L+A+FA YGFNKSH+AAY +++Y TA++K HY  EF+AA +  E  +  ++K    +A
Sbjct: 771  FDLMAEFAGYGFNKSHSAAYGILAYWTAYLKAHYTAEFMAAILNSEAGDTARMKHLTDEA 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGD-----NRIYYSLAAIKGVGTTTARHIMEA--SADKPF 862
            +   I I+PPS+N     F V D       I    +AIK VG   AR I+ +     +PF
Sbjct: 831  KSMGIAILPPSINHSDALFMVEDIEKGKKAIRVGFSAIKHVG-GAAREIVRSRWRRKEPF 889

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
              L D CS VD + +N++ LE L+ AGALD F  +R +L+ +L    +Y Q   K+ T  
Sbjct: 890  ADLFDLCSTVDLRVVNKKALECLIEAGALDEFDENRAKLIGNLPKAVEYGQKRNKSATLG 949

Query: 923  HENIFAHE---KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
             E  F  E            +E+F     + + E E+ ++GFY S HPL+ Y+       
Sbjct: 950  QEGFFNDENFFADKADAYPEMEEFEPWPDAEKLEREKNLIGFYVSTHPLEPYRRDYEAFA 1009

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 +          ++  ++V  ++   +KG+ + +    +   + +   F
Sbjct: 1010 TIKLSD-KDIQNKRLQKVIGVIVETKKHFDKKGNEMMFGVIEDFTGKADFTVF 1061


>gi|116667751|pdb|2HNH|A Chain A, Crystal Structure Of The Catalytic Alpha Subunit Of E.
           Coli Replicative Dna Polymerase Iii
          Length = 910

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/926 (43%), Positives = 570/926 (61%), Gaps = 36/926 (3%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             P FVHL+VHS YS+++G      ++ K AA   PA+AITD  NL   ++F      AG
Sbjct: 2   SEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           I+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62  IKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L
Sbjct: 112 AGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLEL 170

Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +    R
Sbjct: 171 IRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246 PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
           PR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +     
Sbjct: 231 PRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPTGD 285

Query: 305 KEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLIV 
Sbjct: 286 MSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVM 345

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+D
Sbjct: 346 EFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVD 405

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP 
Sbjct: 406 FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPP 465

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
           DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 466 DPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 524

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
             P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      
Sbjct: 525 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPL 584

Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
           D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ 
Sbjct: 585 DIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQ 644

Query: 657 NIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
           + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  
Sbjct: 645 SGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGG 704

Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
           AD+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAY
Sbjct: 705 ADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAY 764

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
           A++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F 
Sbjct: 765 ALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFH 824

Query: 830 VG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ 
Sbjct: 825 VNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIM 884

Query: 888 AGALDCFGYSRMQLLQSLDNIQKYAQ 913
           +GA D  G  R  L+ SL +  K A 
Sbjct: 885 SGAFDRLGPHRAALMNSLGDALKAAD 910


>gi|254495210|ref|ZP_05108134.1| DNA polymerase III, alpha subunit [Polaribacter sp. MED152]
 gi|85819562|gb|EAQ40719.1| DNA polymerase III, alpha subunit [Polaribacter sp. MED152]
          Length = 1445

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/1071 (32%), Positives = 550/1071 (51%), Gaps = 64/1071 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------SQKACA 64
            F HL  H+ +S+L+  + + NI+   A D  PA+A+TDT N+ ++  F        K   
Sbjct: 260  FAHLHNHTQFSVLQSTMQIGNIVKAAAKDNMPAVAMTDTANMMASFHFVSAVLNHNKTAE 319

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              ++PIIGC+ +I         ++ K+       +VLL     GY  L ++ S  + +D 
Sbjct: 320  TPMKPIIGCEFNICED------HKNKSQKDNGYQVVLLAKNKNGYHNLAKMSSIAF-VDG 372

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI    +++   + +I+LTG   G +         + AE+ LL +K+ F D  Y+
Sbjct: 373  FYYVPRIDKEIIKKY-KDDIIVLTGNLYGEVPSKILNLGEKQAEEALLWWKEQFQDDFYI 431

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L RH   D       +++ +  H++ +VATNN+ +L ++D  AHD+L+ V      +  
Sbjct: 432  ELMRHNQQDENIVNETLLKFSKKHDIKIVATNNTFYLEKKDANAHDILLCVKDGEKQATP 491

Query: 244  -------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI--------LQVH 288
                          ++Y K+  EM ++F+DLPEA+ N  EI  +                
Sbjct: 492  KGKGRGYRYGLPNEEYYFKSSDEMKTLFADLPEAIINIQEIVDKIEIFTLARDVLLPAFD 551

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             P   +      D  ++ E N L++    G +       I  G    + ++RLDFEL VI
Sbjct: 552  IPDEFKDARDNEDGGKRGENNFLKHLTFEGAK-------IRYGEITPEIKERLDFELEVI 604

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +  + GYFLIV DFI+ A+K ++ VGPGRGS AGSV AY L IT+IDP+++ LLFERFL
Sbjct: 605  EKTGYPGYFLIVEDFIREARKMDVAVGPGRGSAAGSVVAYCLWITNIDPIKYDLLFERFL 664

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R+SMPD DIDF  + R  V+ YV +KYG  +VAQIIT+G++ AK+++RD  R L +P
Sbjct: 665  NPERVSMPDIDIDFDDEGRGRVMDYVIDKYGANQVAQIITYGTMAAKSSIRDTARVLDLP 724

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIAD--------------DSRFREARLADPSVDRLLEI 514
              + DR+ KLIP      +                         R        V   +  
Sbjct: 725  LFEADRIAKLIPGIKLKNIFGDDPKSKGKVDGLRAEEKQLVEELRTMSSGSDLVSETINK 784

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            +  LEG  R+   HA G++I    ++  VP+     SD+ VTQF+   +E AGL+K DFL
Sbjct: 785  ATILEGSVRNTGIHACGVIITPGDITNYVPVALAKDSDMYVTQFDNSVVESAGLLKMDFL 844

Query: 575  GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GLKTLTL++ ++  +  + GV++D    P DD +TY L     T+GIFQ ES GM++ + 
Sbjct: 845  GLKTLTLIKDTVKIVKAKHGVELDPENFPLDDEKTYELFQRGETVGIFQYESPGMQKHMR 904

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
             ++P    D+IA+ +LYRPGP++ I  + NRK+G E I    P ++  L ET G+ +YQE
Sbjct: 905  SLKPTVFADLIAMNALYRPGPMEYIPSFINRKHGTEDIEYDLPAMEEYLAETYGITVYQE 964

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVM ++Q L+ ++  EADVLR+AMGKK    +DK K +FI  A KNG  +     I++  
Sbjct: 965  QVMLLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFIEQAGKNGHDEEKLEKIWKDW 1024

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNKSH+  YA I+YQTA++K HYP E++A+ ++  M +++ +  F ++ ++  
Sbjct: 1025 EAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMASVLSNNMKDIKAVSFFMEECKRMG 1084

Query: 814  IQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSR 871
            ++++ P +N   + F V  +  + + +AA+KGVG    R I+     +  + S+ D   R
Sbjct: 1085 LEVLGPDINESYLKFSVNQEGAVRFGMAAVKGVGAAAVRAIIAERKENGNYSSIFDLAKR 1144

Query: 872  VDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQWVEKNRTNKH 923
            VD +  N++  +SL+ AGA D F    R Q   +       L+   K+    ++N  +  
Sbjct: 1145 VDLRAANKKSFDSLIKAGAFDSFSDTHRAQYFATDEKGITFLERAMKFGSKYQENENSAQ 1204

Query: 924  ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL--RKMGIK 981
             ++F         +  + +     +      E+ V+G Y S HPLD +K  +      +K
Sbjct: 1205 VSMFGETSTVQFPEPDIPECETWGTMELLSQEKEVIGIYISAHPLDDFKNEMIFCNASLK 1264

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++  +    G N+  A ++   Q + ++ G         +     E   F
Sbjct: 1265 YFKGDLNKYVGMNLSFAGIITEVQHRVSKAGKGWASFFIEDYGDSNEFRVF 1315


>gi|229081856|ref|ZP_04214348.1| DNA polymerase III subunit alpha [Bacillus cereus Rock4-2]
 gi|228701444|gb|EEL53938.1| DNA polymerase III subunit alpha [Bacillus cereus Rock4-2]
          Length = 1105

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1025 (35%), Positives = 587/1025 (57%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+IG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++                 +VLL     GYQ L+++ S +    +      I 
Sbjct: 62   LTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H   
Sbjct: 107  KKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAIQ 164

Query: 193  DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250
            D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  T 
Sbjct: 165  DELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F         +  +  
Sbjct: 225  QYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSDIY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL           G   + + +RLD ELNVI+RM FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLRK-------RYGEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDI+P+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDINPIEYDLLFERFLNPERVTLPDIDIDFPDVRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
               +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 454  -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+    
Sbjct: 812  VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA                 + G    K    +    +   +   E+ VLGFY S +P  
Sbjct: 872  EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|228910428|ref|ZP_04074243.1| DNA polymerase III subunit alpha [Bacillus thuringiensis IBL 200]
 gi|228849194|gb|EEM94033.1| DNA polymerase III subunit alpha [Bacillus thuringiensis IBL 200]
          Length = 1105

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1025 (35%), Positives = 585/1025 (57%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+IG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++                 +VLL     GYQ L+++ S +    +      I 
Sbjct: 62   LTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H   
Sbjct: 107  KKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAIQ 164

Query: 193  DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250
            D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  T 
Sbjct: 165  DELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F         +  +  
Sbjct: 225  QYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSDIY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL           G   + + +RLD ELNVI+RM FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLRK-------RYGAPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
               +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 454  -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +  A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLQNGYDEMSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+    
Sbjct: 812  VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA                 + G    K    +    +   +   E+  LGFY S +P  
Sbjct: 872  EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|229013809|ref|ZP_04170937.1| DNA polymerase III subunit alpha [Bacillus mycoides DSM 2048]
 gi|229135439|ref|ZP_04264226.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST196]
 gi|229169331|ref|ZP_04297041.1| DNA polymerase III subunit alpha [Bacillus cereus AH621]
 gi|228614094|gb|EEK71209.1| DNA polymerase III subunit alpha [Bacillus cereus AH621]
 gi|228648000|gb|EEL04048.1| DNA polymerase III subunit alpha [Bacillus cereus BDRD-ST196]
 gi|228747478|gb|EEL97353.1| DNA polymerase III subunit alpha [Bacillus mycoides DSM 2048]
          Length = 1107

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1025 (35%), Positives = 582/1025 (56%), Gaps = 47/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPIIG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVIRAKELGFSSLAITDENVMYGVIPFYKACKKNGIQPIIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++                 +VLL     GYQ L+++ S +    +      I 
Sbjct: 62   LTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    +    AE+   T++ +F    Y++LQ H   
Sbjct: 107  KKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVAHTYQNMFS-NFYISLQHHAIQ 164

Query: 193  DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TP 250
            D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ T 
Sbjct: 165  DELLLQEKLPEFINKVNVPVVATNDVRYINQSDALVHECLLSVEGGTKMTDPDRPRMKTD 224

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +YLK+  EM ++FS   EA++NT+ IA RC   +  H   LP+F         +  +  
Sbjct: 225  QYYLKSSDEMGALFSHAEEAVQNTITIAERCQVEIPFHVNQLPKFPVP----SNETNDTY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL+          G   + +  RLD ELNVI+RM FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLQK-------RYGTPKEAHIGRLDHELNVISRMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYELLFERFLNPERVTLPDIDIDFPDIRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +    +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLLPRDIDIFSKLIPSKLGITL-RD 452

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 453  AYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVEKTGKQIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +I  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  QIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +T +  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLENGYDETSSEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYVRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E   +K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL    
Sbjct: 812  VTALLEEREEKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDGFGVSRTTLWRSLKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA                 + G    K    +    +   +   E+  LGFY S +P  
Sbjct: 872  EYANLAR-----------DFDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYPTA 920

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 921  QYAELGKELEIPSLAQ--AMRHKKKVQRAIVYITSVKVIRTKKLQKMAFITFCDQNDEME 978

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 979  AVIFP 983


>gi|68535846|ref|YP_250551.1| DNA polymerase III subunit alpha [Corynebacterium jeikeium K411]
 gi|260578063|ref|ZP_05845985.1| DNA polymerase III, alpha subunit [Corynebacterium jeikeium ATCC
            43734]
 gi|68263445|emb|CAI36933.1| DNA polymerase III, alpha subunit [Corynebacterium jeikeium K411]
 gi|258603803|gb|EEW17058.1| DNA polymerase III, alpha subunit [Corynebacterium jeikeium ATCC
            43734]
          Length = 1189

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/1075 (28%), Positives = 521/1075 (48%), Gaps = 54/1075 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S SFVHL  H+ YS+L+G   ++ +  ++     PA+ +TD  N++ A  F +   A
Sbjct: 1    MSGS-SFVHLHNHTEYSMLDGMAKVDLLAKEVVRQGMPAVGMTDHGNMYGADAFYRAMTA 59

Query: 65   AGIQPIIGCQLDIDMQDNL----------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            AG++PIIG +  I  +             +  +   +         ++   A G + L  
Sbjct: 60   AGVKPIIGIEAYIAPESRFNQQRVRWGKPEQKSDDVSASGAYLHQTMIAENATGLRNLFY 119

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L S      Q  +  R+    + +  +EG+I  TG  SG +           A +    +
Sbjct: 120  LSSMASYEGQLGKWPRMDAELIAQ-HSEGIIATTGCPSGDVQTRLRLGQFDKALEAAGMW 178

Query: 175  KKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            + ++G D  ++ L  H    ++     ++++    ELP + TN+  ++ E+   AH+V++
Sbjct: 179  QDIYGKDNFFLELMDHGLEIEKRVRDDLLEIGRKLELPPLVTNDCHYVLEQQAPAHEVML 238

Query: 233  AVAHSTVVSQKDRPR--------VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
             V   + + +    +         T  +             ++P+  +NT+ +A R    
Sbjct: 239  CVQTGSTLDEPTLDQGGKRFAFSGTGYYVRSAEDIRAQWDKEVPKGCDNTLWVAERVQDY 298

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
             +V        +              L ++ + GLE R             +Y  R  +E
Sbjct: 299  SEVWEEHPHDRMPIADVPEGHTPTTWLTHEVMKGLEERFPG-----KEVPAEYIDRAKYE 353

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            ++VI    +  YFLIVA+ I+ A+   I VGPGRGS AG++ AYALTIT+IDP+   LLF
Sbjct: 354  ISVIDMKGYPSYFLIVAELIKHARSVGIRVGPGRGSAAGALVAYALTITNIDPMEHGLLF 413

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFLNP+R S PD DIDF   RR E+IRY  +++G +++AQ+ITFG+++ K A++D  RA
Sbjct: 414  ERFLNPERPSAPDIDIDFDDRRRGEMIRYAADRWGEDKIAQVITFGTVKTKQAIKDSARA 473

Query: 465  L--QMPYSQVDRL------CKLIPNDPAHPVSLQAIADDS---RFREARLADPSVDRLLE 513
               Q  +   DR+        +  + P H ++             R+    DP V ++ +
Sbjct: 474  HYGQAGFQMADRITKALPPAIMAKDIPLHGITDPEHERYPEAAEVRQLIETDPDVAKIYK 533

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             +  LEG+ R A  HA  +++   PL   +PM++  +    +T +     E  GL+K DF
Sbjct: 534  DALGLEGVIRQAGVHACAVIMSSVPLLDCIPMWKRKQDGALITGWPYPACEAIGLLKMDF 593

Query: 574  LGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL+ LT++  +L+ +   R   +DL  +   D  TY LL    TLG+FQL+S+GM++ L
Sbjct: 594  LGLRNLTVIGDALENIKANRDFDLDLENLDTVDDPTYELLARGETLGVFQLDSAGMQKLL 653

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPL----IDPMLKETQ 686
            + M+P    DI+A ++LYRPGP+     +   +RKNG++ IV IHP     +  +L+ET 
Sbjct: 654  KRMKPTGFNDIVAALALYRPGPMGVDAHWEYADRKNGRKPIVPIHPELEEALHEILEETY 713

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+I+YQEQ+M+I+Q ++ Y+  +AD  R+AMGKK  E ++K+   F SG   NG S    
Sbjct: 714  GLIVYQEQIMKISQKVANYTAGQADGFRKAMGKKKPEVLEKEFVTFESGMKSNGYSADAI 773

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++ +  FA Y FNKSHAA Y ++S+ TA++K +Y  E++AA +T   D  +K   + 
Sbjct: 774  KTLWDTILPFAGYAFNKSHAAGYGLVSFWTAYLKANYAPEYMAALLTSVADKKDKSAIYL 833

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSL 865
             D R   I+++ P VN     F+     I + L A++ VG      I+ +  +   F   
Sbjct: 834  ADCRHLGIRVLSPDVNDSRYTFQSVGKDIRFGLGAVRNVGEDVVNSIIASREEKGAFTDF 893

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             D+  ++D    N+RV ESL+ AGA D  G+ R  ++   ++        +K       +
Sbjct: 894  SDYLDKIDLVAANKRVTESLIKAGAFDSLGHPRKGMVLVHEDAVDAVTATKKAAAKGQFD 953

Query: 926  IFAHEKGTFSD----KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
            +FA   G        ++ +          +   E+ +LG Y SGHPLD ++  L      
Sbjct: 954  LFAGLGGDDDAGDVFRVEVPD-QEWERKHQLALERDMLGLYVSGHPLDGFEDALDAQVDT 1012

Query: 982  GYEESV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK-EYEANFFP 1033
                 +        ++++  ++ + +++  R G+     T  +    + E   FP
Sbjct: 1013 PLTTVLSGELPNNKDLKIGGIISAVERRIDRNGNPWAIATLEDQHGAQVELLVFP 1067


>gi|229062288|ref|ZP_04199609.1| DNA polymerase III subunit alpha [Bacillus cereus AH603]
 gi|228717016|gb|EEL68697.1| DNA polymerase III subunit alpha [Bacillus cereus AH603]
          Length = 1107

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1025 (35%), Positives = 582/1025 (56%), Gaps = 47/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQPIIG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVIRAKELGFSSLAITDENVMYGVIPFYKACKKNGIQPIIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++                 +VLL     GYQ L+++ S +    +      I 
Sbjct: 62   LTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    +    AE+   T++ +F    Y++LQ H   
Sbjct: 107  KKWLAHY-AKGLIAISPGKDGEIEQLLLEDKESQAEEVAHTYQNMFS-NFYISLQHHAIQ 164

Query: 193  DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TP 250
            D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ T 
Sbjct: 165  DELLLQEKLPEFINKVNVPVVATNDVRYINQSDALVHECLLSVEGGTKMTDPDRPRMKTD 224

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +YLK+  EM ++FS   EA++NT+ IA RC   +  H   LP+F         +  +  
Sbjct: 225  QYYLKSSDEMGALFSHAEEAVQNTITIAERCQVEIPFHVNQLPKFPVP----SNETNDTY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL+          G   + +  RLD ELNVI+RM FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLQK-------RYGTPKEAHIGRLDHELNVISRMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYELLFERFLNPERVTLPDIDIDFPDIRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +    +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLLPRDIDIFSKLIPSKLGITL-RD 452

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 453  AYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  +   + + G ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVEKTGKQIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +I  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  RIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +T +  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLENGYDETSSEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYVRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E   +K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL    
Sbjct: 812  VTALLEEREEKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDGFGVSRTTLWRSLKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA                 + G    K    +    +   +   E+  LGFY S +P  
Sbjct: 872  EYANLAR-----------DFDLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYPTA 920

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 921  QYAELGKELEIPSLAQ--AMRHKKKVQRAIVYITSVKVIRTKKLQKMAFITFCDQNDEME 978

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 979  AVIFP 983


>gi|302388689|ref|YP_003824510.1| DNA polymerase III, alpha subunit [Thermosediminibacter oceani DSM
            16646]
 gi|302199317|gb|ADL06887.1| DNA polymerase III, alpha subunit [Thermosediminibacter oceani DSM
            16646]
          Length = 1061

 Score =  675 bits (1741), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/1033 (34%), Positives = 548/1033 (53%), Gaps = 36/1033 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL VHS YSLL+G   L  ++ K A    PA+A+TD   L+  + F +    AGI+P
Sbjct: 2    AFCHLHVHSEYSLLDGLCRLPLLVKKAAELAMPALALTDHGGLYGMVPFYRLCLEAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC++ +            +    +   +VLL    EG++ L+ LV+R + +D      
Sbjct: 62   ILGCEVYV------VEDVTCRWGKESFHHLVLLSENQEGFKNLLSLVTRSH-VDGFYYRP 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R+    L     +GLI L+G   G +         + AE+    +  +FG D  ++ LQ 
Sbjct: 115  RVDKKLLAS-HAKGLIALSGCIRGQVADLILRGDVKAAEEAAKEYADIFGRDNFFLELQY 173

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    ++     +  +A    + LVATN+  +L   D   H VL+AV   +    +    
Sbjct: 174  HGLAAEKKANFWMRSIAERLGIGLVATNDVHYLQPSDAGTHRVLLAVQTLS-ALGEAASL 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                HYLK+ +EM ++F ++P ALENTV IA RC   L +    LP     E        
Sbjct: 233  PGNQHYLKSPAEMEALFREIPGALENTVAIAERCDVRLPLGGTKLPEIALPEGV----SA 288

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++ LR     G   R            Q+ + RL++EL+VI +  ++GYFLIV D + +A
Sbjct: 289  DDYLRKLCFQGAAARYG------RPLPQEVKDRLNYELSVIKKTGYAGYFLIVKDIVDFA 342

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +K  I VG GRGS AGS+ AY L ITD+DPL++ L+FERFLNP+R+S PD DID C   R
Sbjct: 343  RKRGIIVGAGRGSAAGSLAAYVLGITDVDPLKYGLIFERFLNPERISPPDIDIDLCHLGR 402

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EV+ Y+++++G ER+A +  F +LQA+AALRD GRAL + Y ++D  C  IP   +H  
Sbjct: 403  REVLEYIRHRFGRERIAHVGAFSTLQARAALRDTGRALGLAYEKIDAACSRIPY--SHIN 460

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A+ +          D  V R   I++KL+GL RH + H+AG+ I DRPL++ VP+ R
Sbjct: 461  LEDALKESPHLSSLVKNDAGVRRAFAIARKLQGLPRHMTQHSAGVAIADRPLTEYVPLQR 520

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                ++     +M  +E+ GL+K D LGL+ LT++ ++L  +  R  + +    IP DD 
Sbjct: 521  ASGEEIITQA-DMYALEELGLVKIDLLGLRFLTVIGETLKLVRDRYGIDMKPEEIPLDDE 579

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY +L    T G FQLES GMR+ L  ++P  IED+ A+++LYRPGP+ + +       
Sbjct: 580  KTYMVLARGDTGGCFQLESGGMRKMLRRIKPKNIEDLSAVLALYRPGPLKSGMAEEFIAR 639

Query: 667  GK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             +  + +  IHP ++P+L++T GV +YQEQ+MQ A L+SGY+  EAD+LRRA+ KK K+E
Sbjct: 640  RQGIKPVSYIHPALEPVLRDTYGVFVYQEQLMQAACLISGYTPGEADLLRRAIAKKKKDE 699

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            ++++K RF+  A + GI +  A  +F  L  F DYGFNKSH+ +YAV++Y+T +++ H+P
Sbjct: 700  IEREKPRFLKRAVERGIDEKTAGELFATLEAFGDYGFNKSHSISYAVMAYRTVYLREHFP 759

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----RIYYSLA 840
            +E+ A+   L MD   +++ +  +AR+  I+++ P +N     F          I   LA
Sbjct: 760  LEYFASLFNLYMDTPSRLQLYLCEARRREIRLLLPDINMSGAGFVPEGGPHQRAIRAGLA 819

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             IK +G      I++A  D PF    DFC RVD + +N R LESLVF+GA D FG  R  
Sbjct: 820  LIKNLGPRGMEEILQAREDCPFTGFFDFCRRVDRRVINARALESLVFSGAFDSFGIPRPA 879

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L+ SL  +          R      +        +    L   +    S +   E   +G
Sbjct: 880  LIISLKWMLSGCS----GRPQNQLCLLNENPDVEALAADLS-VADFTPSQKMAQEMMSMG 934

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            +Y + HP++  K    +       +         +R++ +++  +  +TR G R+ +   
Sbjct: 935  YYITAHPMEFIKGRPEETCTHTASDVEEIGEKQRVRISGILLDLRSGRTRSGERMLFARL 994

Query: 1021 SEPAKEYEANFFP 1033
             +     E   FP
Sbjct: 995  EDLTGSVELVIFP 1007


>gi|229192805|ref|ZP_04319763.1| DNA polymerase III subunit alpha [Bacillus cereus ATCC 10876]
 gi|228590644|gb|EEK48505.1| DNA polymerase III subunit alpha [Bacillus cereus ATCC 10876]
          Length = 1105

 Score =  674 bits (1739), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1025 (35%), Positives = 584/1025 (56%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+IG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++                 +VLL     GYQ L+++ S +    +      I 
Sbjct: 62   LTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H   
Sbjct: 107  KKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAIQ 164

Query: 193  DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250
            D      ++ +      + +VATN+  ++++ D   H+ L++V   T ++  DRPR  T 
Sbjct: 165  DELLLQEKLPEFISRVNISVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F         +  +  
Sbjct: 225  QYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSDIY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL           G   + + +RLD ELNVI+RM FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLRK-------RYGEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  YILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
               +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 454  -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G   NG ++T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLGNGYNETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+    
Sbjct: 812  VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA                 + G    K    +    +   +   E+  LGFY S +P  
Sbjct: 872  EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|148555255|ref|YP_001262837.1| DNA polymerase III subunit alpha [Sphingomonas wittichii RW1]
 gi|148500445|gb|ABQ68699.1| DNA polymerase III, alpha subunit [Sphingomonas wittichii RW1]
          Length = 1155

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 466/1035 (45%), Positives = 625/1035 (60%), Gaps = 28/1035 (2%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L++ S+Y++LEGA+    I         PA A+TD N L++A+ FS  A   G+QP
Sbjct: 5    SFVPLRIFSAYTMLEGAIDPKAIAKHAKKLGFPAAALTDRNGLYAAMAFSDGAKKEGVQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG  L I      ++             + L      GY  L  LVS  +L     +  
Sbjct: 65   VIGTMLAIRRPGIDQLIIDW---------LALYAQDMTGYDNLCALVSAAHLERPVHEDA 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + LS L E  T+GLI LT G  G + R      +  A       + LF  RLYV L R 
Sbjct: 116  HVPLSAL-EGRTDGLIALTAGGEGALTRLLAAEQAGAAASYADKLEALFPGRLYVELARR 174

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E  ++ LAY   LPLVATN + F   E + AHD ++ +A S+ +   +RPR 
Sbjct: 175  GNADEEAAEEALIDLAYARNLPLVATNPACFAEPEFHAAHDAMLCIASSSYIDTAERPRS 234

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +PD ++K  +EM  +F D+PEAL NT+ +A+RC+      A    + I       ++ E 
Sbjct: 235  SPDLWMKPAAEMAKLFEDIPEALANTLVVAQRCAV-----AAPYRKPILPSLAGDREGEA 289

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR  A  GLE+RL +  +      Q Y  RL FE  +I +M F GYFLIVADFI+WAK
Sbjct: 290  EALRRDAREGLEMRLEKLGVTDAEQRQAYFDRLAFETEIIIKMGFPGYFLIVADFIKWAK 349

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             ++IPVGPGRGSGAGSV A+ALTITD+DPLR  LLFERFLNP+R+SMPDFDIDFC+ RR 
Sbjct: 350  DHDIPVGPGRGSGAGSVVAWALTITDLDPLRLGLLFERFLNPERVSMPDFDIDFCETRRG 409

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVIRYVQ KYG ++VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P  P +
Sbjct: 410  EVIRYVQEKYGRDQVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWT 469

Query: 489  -LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+            D  V RLL+++ KLEGL RH+STHAAG+VIGDR L  LVP+YR
Sbjct: 470  LDRALNGVPELAAEYKGDIEVRRLLDLAMKLEGLPRHSSTHAAGVVIGDRRLDALVPLYR 529

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D RSD+PVTQF+MK++E AGL+KFDFLGLKTL++LQK++ FL QRG+ VDL  +P+DD E
Sbjct: 530  DPRSDMPVTQFDMKFVEGAGLVKFDFLGLKTLSVLQKAVQFLNQRGIAVDLDSLPWDDPE 589

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
             Y LL    T+G+FQLES GMR+ L  ++P C EDIIALVSLYRPGP+DNI  +  RKNG
Sbjct: 590  VYALLQRGDTVGVFQLESEGMRRTLAAVRPTCFEDIIALVSLYRPGPMDNIPTFGARKNG 649

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E+I   HPL++ +LKET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKKIK EMD 
Sbjct: 650  REEIEYPHPLLEGILKETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKIKAEMDA 709

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+ RF+ G + N I+   A  +F+L+ KFA YGFNKSHAAAYA+++Y TAW+K H+  EF
Sbjct: 710  QRSRFVEGCAANDIAAAKANELFDLIDKFAGYGFNKSHAAAYALVAYHTAWLKAHHKAEF 769

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIK 843
             AASM  +M   +K+  F  D R+  IQ + P +N    +F V        + Y+L A+K
Sbjct: 770  YAASMCYDMAQTDKLAIFIDDMRRMGIQCLGPCINHSEAEFAVEQQDEELFVRYALGALK 829

Query: 844  GVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GVG      ++EA     PF SLEDF  R+D ++LNRR LESL   GA D     R  + 
Sbjct: 830  GVGEKAMEQLVEARKAKGPFGSLEDFADRIDPRQLNRRQLESLAGGGAFDEIETERAGIF 889

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             S + I  +A    + R +    +F       +  I +++      + R   E+   GFY
Sbjct: 890  ASAELILAHASSAAEQRESGQGGLFGDSPAALAP-IRIDRGLHWTLADRMAAEKESFGFY 948

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATI---RGNNI--RLAAMVVSKQQKKTRKGSRIGW 1017
            FS HP D  + +    G + +    A      G  +   ++A++   + + + KG R   
Sbjct: 949  FSSHPTDQVRHLAEANGARSFAALCALPAPVDGGRVNSVMSALIEDARWRTSAKGKRYMM 1008

Query: 1018 VTFSEPAKEYEANFF 1032
             T S+ + ++ A  F
Sbjct: 1009 ATCSDSSGQFIATCF 1023


>gi|229180923|ref|ZP_04308258.1| DNA polymerase III subunit alpha [Bacillus cereus 172560W]
 gi|228602480|gb|EEK59966.1| DNA polymerase III subunit alpha [Bacillus cereus 172560W]
          Length = 1105

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1025 (35%), Positives = 586/1025 (57%), Gaps = 49/1025 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+IG
Sbjct: 2    HLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPVIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                I  ++                 +VLL     GYQ L+++ S +    +      I 
Sbjct: 62   LTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IP 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H   
Sbjct: 107  KKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHAIQ 164

Query: 193  DRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTP 250
                   ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  T 
Sbjct: 165  AELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTD 224

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F         +  +  
Sbjct: 225  QYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSDIY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL           G   + + +RL+ ELNVI+RM FS YFLIV DF+++A +N
Sbjct: 281  LRRVCEEGLRK-------RYGEPKEVHIKRLNHELNVISRMGFSDYFLIVWDFMKYAHEN 333

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+
Sbjct: 334  HILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRDEM 393

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +   
Sbjct: 394  IRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA 453

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
               +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  
Sbjct: 454  -YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGH 511

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETY 609
            +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A + G ++D+  +P  D +T+
Sbjct: 512  NDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKTGKEIDIRNLPLQDEKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK 
Sbjct: 572  QLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKR 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+++
Sbjct: 632  KIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQER 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ 
Sbjct: 692  KHFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMT 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T
Sbjct: 752  ALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGMAT 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+    
Sbjct: 812  VTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKGAL 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA                 + G    K    +    +   +   E+ VLGFY S +P  
Sbjct: 872  EYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEVLGFYLSSYPTA 918

Query: 970  VYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E E
Sbjct: 919  QYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDEME 976

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 977  AVLFP 981


>gi|88607188|ref|YP_505564.1| DNA polymerase III, alpha subunit [Anaplasma phagocytophilum HZ]
 gi|88598251|gb|ABD43721.1| DNA polymerase III, alpha subunit [Anaplasma phagocytophilum HZ]
          Length = 1127

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 468/1025 (45%), Positives = 662/1025 (64%), Gaps = 31/1025 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ HS YSLLEG + + +++      + PA+A+TD+ NLF +LEFS  A  AG+QPI
Sbjct: 5    FVHLRTHSDYSLLEGMIKVESLVAMCVEQKMPAVALTDSGNLFGSLEFSDCAARAGLQPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC + ++   N             + +I+LL  +AEG+  L  L+S  +   Q ++  R
Sbjct: 65   IGCNIMVEESGN------------NLGNILLLAKSAEGFANLTNLISNGFNNSQLEKINR 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + +  L ++   GLI LTGG    + RA   N   +  + L +  ++F D +YV LQRH 
Sbjct: 113  VNIDDLLKL-NGGLIALTGGHDDILARALLNNGDDL--RALDSILQVFKDNVYVELQRHG 169

Query: 191  GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                R  E  +++ AY   +PLVATN+  F    D++AHD+L  ++    V Q+DR R+T
Sbjct: 170  LNGQREVEELLIRFAYERNIPLVATNDVFFACRGDFQAHDILSCISTGAYVVQEDRHRLT 229

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P+HY K  SEM  +FSD+PEA+ NT  IA+RCSFI +V  P LP F   E     + E  
Sbjct: 230  PEHYFKTASEMYELFSDVPEAVLNTSLIAQRCSFIQEVRKPQLPHFPCFEG----RTEAE 285

Query: 310  ELRNKAVAGLE-VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            EL   A+AGLE    ++G          Y +RL +EL V+  M++SGYFLIVADFI+W+K
Sbjct: 286  ELTECALAGLEIRLKSKGIGDDEEQRDLYLKRLKYELGVVISMEYSGYFLIVADFIRWSK 345

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ++RD
Sbjct: 346  QNDIMVGPGRGSGAGSLIAWSLGITDLDPIEFGLIFERFLNPDRVSMPDFDIDFCQEKRD 405

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            +VI YV+ KYG   VA IITFG LQA+A LRDVGR +Q+PY+Q+DR+CK+IP+DP  PV+
Sbjct: 406  KVIEYVKEKYG--YVAHIITFGKLQARAVLRDVGRVMQIPYAQIDRICKMIPHDPISPVT 463

Query: 489  L-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L +AI  D   +  +  D +V +L+EIS KLEGLYRHAS HAAGIVI D+PL   VP+Y 
Sbjct: 464  LLEAIEMDQNLKAEQENDETVAKLIEISLKLEGLYRHASVHAAGIVICDQPLENFVPLYY 523

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D  S LP+TQ+NMK++EKAGL+KFDFLGL+TLT++ +    +  RG +++LS IP +D +
Sbjct: 524  DKSSSLPITQYNMKYVEKAGLVKFDFLGLRTLTMIDQICSLIRARGEEIELSKIPLNDKK 583

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L+   ++G+FQLES+GMR+A+  ++PD I+DIIAL+SLYRPGP++NI +Y +RK+G
Sbjct: 584  TYEMLSAGDSIGVFQLESAGMREAISKLRPDSIQDIIALISLYRPGPMNNIAIYISRKHG 643

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             E+   IHP+++ +LKET GVIIYQEQVM+IA++L+GYSL EAD+LRRAMGKKIKEEMD+
Sbjct: 644  LEEPDYIHPMLECVLKETFGVIIYQEQVMEIARILAGYSLGEADLLRRAMGKKIKEEMDR 703

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q++ F+ GA  NGI ++ A  IF+L+AKFA YGFNKSHAAAYA+IS+QTA+++ +Y  EF
Sbjct: 704  QRQDFVDGAVSNGIEESKASYIFDLVAKFAGYGFNKSHAAAYALISFQTAYLRANYTKEF 763

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              ASM L++D+ +K+   CQ A+   I +MPP +N    +F V  N I Y L A+K VG 
Sbjct: 764  FTASMNLDIDDKDKLGLLCQQAKMCGIDVMPPDINLSSAEFTVSGNSIRYGLGALKNVGQ 823

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             TA  I+       +  + DF   V  +   +R LESL+ +G+LD    +R QL  SL  
Sbjct: 824  LTAHEILPV-EGGRYSDIWDFAGNVRIRSPLKRTLESLIKSGSLDGIHPNRRQLFASLGI 882

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            I    +  + +      ++F+ ++        LE+        + E+E   +GFY   HP
Sbjct: 883  ILNIIENKKVSMDAHQFSLFSEKEEG-----QLEEVDDWTEDEKIEHEFATIGFYLRYHP 937

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L  Y+ +L K G++    +         + A +V S +  ++    R   V  S+P    
Sbjct: 938  LSKYEQVLGKFGVRFVSSTQEEKESGVTKRAGVVSSVK-MRSANKERFAIVRVSDPHGVN 996

Query: 1028 EANFF 1032
            +  F+
Sbjct: 997  DVAFY 1001


>gi|315453387|ref|YP_004073657.1| DNA polymerase III, alpha chain [Helicobacter felis ATCC 49179]
 gi|315132439|emb|CBY83067.1| DNA polymerase III, alpha chain [Helicobacter felis ATCC 49179]
          Length = 1190

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1067 (34%), Positives = 582/1067 (54%), Gaps = 61/1067 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +E    F HL +H+ YSLL+GA  +  +  +I      +++++D  N+F A++F      
Sbjct: 1    MEN---FTHLHLHTEYSLLDGANKIKILAQRIKELGMTSVSMSDHGNMFGAIDFYTCMKK 57

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +  +   +NL+              + L     EGY  L+ L S+ +L   
Sbjct: 58   EGIKPIIGIETYLHNAENLE-----DKQSRQRFHLCLYAKDQEGYANLMYLSSQAFLK-G 111

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----------SQVAEKRLLTF 174
                 RI    L+E   +GLI  +    G I+     N+           + A++    +
Sbjct: 112  FYYFPRINKKLLKER-AKGLICSSACLQGEINWHLNLNNPKNKQYGAKGYEEAKRIACEY 170

Query: 175  KKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            + +FGD  Y+ + RH   D+ Y + Q+++L+    + L+ATN++ +  +ED  A +V M 
Sbjct: 171  QDIFGDDFYMEIMRHGITDQLYIDEQLIKLSLQTGIKLIATNDTHYTKQEDARAQEVAMC 230

Query: 234  VAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            VA +     KDR + +  + Y+K+ ++M  +F+D+PEALE+T EIAR+C   L +     
Sbjct: 231  VAMNKTFGDKDRLKHSVHEFYIKSPAQMAELFADIPEALEHTQEIARKCQLELDLKDDSN 290

Query: 293  PRFIEKECDDIQKEEEN---------ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            P    +     +   +             +KA  GL+ RL     ++      Y++RL++
Sbjct: 291  PPTPPRFKFTKEYATKEGLDFEEDALYFAHKAREGLKKRLEIIDPSQHAT---YQERLEY 347

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            E+  I  MKF+GY LIV DFI+ A+++ IPVGPGRGS AGS+ A+ L ITDIDPL++ LL
Sbjct: 348  EIKTIVEMKFAGYMLIVWDFIRHARESGIPVGPGRGSAAGSLVAFCLQITDIDPLKYDLL 407

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNP+R+SMPD D DFCQ RR E++ Y+ +KYG   VAQ+ITF  + AK  +RDV R
Sbjct: 408  FERFLNPERVSMPDIDTDFCQRRRGEMLDYMVSKYGKYNVAQVITFNKMLAKGVIRDVAR 467

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             L MPY + D + KLIPN     +  +A   + +       + +  ++ E +  LE L R
Sbjct: 468  VLDMPYKEADEMAKLIPNRLGITLK-EAFELEPKIAMLINTNKTAKQVWEFALNLENLNR 526

Query: 524  HASTHAAGIVI-GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
             A  HAA +V+  +R L    P+Y   R+   VTQ++MK++E   LIKFDFLGLKTL+++
Sbjct: 527  SAGKHAAALVVDSERELWHKTPLYTSERTGGIVTQYSMKYLEAVDLIKFDFLGLKTLSVI 586

Query: 583  QKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
              +L  + +    K+D   +  DD   Y  +    T+GIFQ+ES   +   + ++P C E
Sbjct: 587  DDALKLIEKYAHQKIDFLSVDMDDPSVYQTIQEGNTIGIFQIESGMFQTLNKRLRPSCFE 646

Query: 642  DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA+++L RPGP+++ +   + NRK+G E I      ++P+L+ T G I+YQEQVMQI 
Sbjct: 647  DIIAIIALGRPGPMESGMVDDFVNRKHGLEPITYAFDALEPILRPTYGTIVYQEQVMQIV 706

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q + G+SL EAD++RRAMGKK  + M   + +FI GA K G     A ++F+L+ KFA Y
Sbjct: 707  QTIGGFSLGEADLIRRAMGKKDAQIMADNRAKFIEGARKRGYEADKAGDLFDLIVKFAGY 766

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA++++QTA++KTHY  EF+AA ++ E  ++E++  +  +A    I++  P
Sbjct: 767  GFNKSHSAAYAMLTFQTAYLKTHYKHEFMAAMISSECRHIEEVAHYVDEASSMGIEVQRP 826

Query: 820  SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874
             VN   V F+V    G   I + L AIKG G      ++E       F  L+DF S++D 
Sbjct: 827  HVNVSDVRFRVQEEGGKKHIVFGLEAIKGAGEGPLGTLVEIREKHGAFKDLQDFISKIDF 886

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
             K ++R+LE L+ +G+LD  GY+R  +L++LD I +  +  +K        +FA    T 
Sbjct: 887  SKFSKRILEPLIKSGSLDNLGYNRRTMLENLDAICEEGRRKDKTNAQMRAGLFADA-QTE 945

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGN 993
               + L  +   + +   + E   +G YFSGHPL+ +K  ++ +  I    +      G+
Sbjct: 946  RAHLELTPYEEYDINTLLDFEYECMGIYFSGHPLNEFKDQIKPLKNILKSTDIKRVEIGS 1005

Query: 994  NIRLAAMVVSK--------QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            N+ L   ++          ++     G  +      + +  +E   F
Sbjct: 1006 NVVLVGKILELKRKLGKKSKKPY---GEAVIV----DLSGRFELMLF 1045


>gi|30022680|ref|NP_834311.1| DNA polymerase III DnaE [Bacillus cereus ATCC 14579]
 gi|29898239|gb|AAP11512.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
          Length = 1108

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1027 (35%), Positives = 586/1027 (57%), Gaps = 49/1027 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3    FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63   IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108  ILKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVDRTYQNMFG-HFYMSLQHHA 165

Query: 191  GYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D     + +        +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166  IQDELLLQEKLLEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T  +YLK+  EM ++FS  PEA++NT++IA RC   +  H   LP+F         +  +
Sbjct: 226  TDQYYLKSSDEMEALFSHAPEAIQNTIKIAERCQVEIPFHVNQLPKFPVP----SNETSD 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL           G   + + +RLD ELNVI+RM FS YFLIV DF+++A 
Sbjct: 282  IYLRRVCEEGLRK-------RYGEPKEVHIKRLDHELNVISRMGFSDYFLIVWDFMKYAH 334

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335  ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDVRRD 394

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395  EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455  DA-YEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
              +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+A +   ++D+  +P  D +
Sbjct: 513  GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIANKIGKEIDIRNLPLQDEK 572

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+G
Sbjct: 573  TFQLLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHG 632

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K KI  +HP + P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D+
Sbjct: 633  KRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQ 692

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +++ F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF
Sbjct: 693  ERKHFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEF 752

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G 
Sbjct: 753  MTALLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQRSGYNFQIEGNAIRYSLLSIRNIGM 812

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             T   ++E    K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +S+  
Sbjct: 813  ATVTALLEEREKKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSIKG 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +YA                 + G    K    +    +   +   E+  LGFY S +P
Sbjct: 873  ALEYANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
               Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E
Sbjct: 920  TAQYVKLAKELEIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDE 977

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 978  MEAVLFP 984


>gi|32491128|ref|NP_871382.1| hypothetical protein WGLp379 [Wigglesworthia glossinidia endosymbiont
            of Glossina brevipalpis]
 gi|25166335|dbj|BAC24525.1| dnaE [Wigglesworthia glossinidia endosymbiont of Glossina
            brevipalpis]
          Length = 1159

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1046 (38%), Positives = 618/1046 (59%), Gaps = 37/1046 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K+  F+HL++HS YS+++G   +  I+++      PA+AITD  NL+  ++F   A  
Sbjct: 1    MSKT-YFIHLRIHSDYSIIDGLPKIETIINRAKKLNMPALAITDFTNLYGLIKFYIFAKK 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG    +          +       +  I +L S   GY+ LI L+S+ Y   Q
Sbjct: 60   NGIKPIIGSDFYL---------KKIICGKEEISEITILASNNMGYKNLILLISKAYQFGQ 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I L WL +  + GLI+L+GG  G I +    N+ +  +  +  +KK F +R Y+
Sbjct: 111  TNIGPTINLYWLSKYNS-GLIILSGGIYGEIGKYLIKNNLENIKYCINFYKKYFHNRYYL 169

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             + R     +    +  + L+  + +PLVATNN  F+   D+  H++ +++  +T +   
Sbjct: 170  EITRTGKSEEEIYINYALNLSINYNIPLVATNNVRFIFRNDFNVHNIKVSIYQNTTLKNL 229

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             +   T + Y+K   EM  +FSD+PE+LEN++EIA+RC+  +++      ++        
Sbjct: 230  KKNNYTDNQYMKCEKEMCDLFSDIPESLENSIEIAKRCNVNIEL-----NKYHLPHFSSG 284

Query: 304  QKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +   +  + NK+  GLE     L   +I K  + + Y  RL  EL VI +MKF  YFLI+
Sbjct: 285  ELSPKKYIINKSYLGLEKKLDFLFPNSIEKNKNKKKYETRLKNELKVINKMKFPSYFLII 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             +FI WAKKNNIPVGPGRGSGAGS+ AY+L ITDIDPL F LLFERFLNP+R+SMPDFDI
Sbjct: 345  MEFISWAKKNNIPVGPGRGSGAGSLVAYSLNITDIDPLSFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC ++RD VI +V N YG + VAQIITFG + A++ ++DVGR L  PY  VD++ KLIP
Sbjct: 405  DFCMEKRDLVINHVANIYGKKSVAQIITFGKMTARSVIKDVGRVLGFPYRFVDKISKLIP 464

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             DP   +    +  + +  +   +D  V +++++S+ LEGL ++ S HA GIVI  + ++
Sbjct: 465  LDPGVTLEKS-LNTEHQLIKLYSSDEEVKKIIDMSKNLEGLIKNVSKHAGGIVISPKEIT 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS- 599
               P+Y D++++  +TQF+   IEK GL+KFDFLGL+TLT++  ++  + ++  K +L  
Sbjct: 524  NFTPIYYDIKNNTQITQFDKDDIEKIGLVKFDFLGLRTLTIIDWTVKIINKKREKNNLDL 583

Query: 600  ----LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
                 IP +D +++ LL    T+ +FQLES G+R  ++ +QPDC EDII+LV+L+RPGP+
Sbjct: 584  IDISKIPLNDIKSFELLKKSKTISVFQLESKGIRDLIKRLQPDCFEDIISLVALFRPGPL 643

Query: 656  DNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +V  + NRK+GKEKI        H L++P+LK T G+I+YQEQVM IAQ+L+GYSL 
Sbjct: 644  KSGMVENFINRKHGKEKIFYPDKNWQHELLEPILKSTYGIILYQEQVMSIAQVLAGYSLG 703

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            EAD+LRRAMGKK  +EM +Q+ RF +GA KNGI K  ++ IF+LL KF+ YGFNKSH+AA
Sbjct: 704  EADILRRAMGKKKVKEMSEQRNRFKNGALKNGIDKIFSMKIFDLLEKFSGYGFNKSHSAA 763

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++SYQT W+KTHY  EF++++M+ +MDN ++I     + +   I+I+ P +NT    F
Sbjct: 764  YALLSYQTLWLKTHYATEFMSSAMSADMDNSDRIISLINECKNIGIKILLPDINTCNYHF 823

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            KV D +I Y L AIKG+G ++ + I  +   +  F  L D C R D KKL R+ +E L+F
Sbjct: 824  KVVDKKIIYGLGAIKGIGLSSIKEIKNQIKKNGNFTDLFDLCLRSDPKKLTRKTIEKLIF 883

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            +GALD     R   +++L    K+AQ   KN+     ++F +   +       E  S   
Sbjct: 884  SGALDKLNKDRSFNVKNLPYAMKFAQQKIKNKKLGQIDMFNYRLKSKYIFKHFE--SSMQ 941

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG-YEESVATIRGNNIRLAAMVVSKQQ 1006
            +    E E+ +LG Y S HP+  Y         +   +       G N  +  M+ S ++
Sbjct: 942  NFSILEEERNMLGIYLSNHPMKYYLQEFIYYSNRNLIKNINKNSSGKNKNICGMISSVKK 1001

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T+ G  I  +   + +   E   F
Sbjct: 1002 IYTKSGDIIISLLLEDSSDILEVILF 1027


>gi|313847630|emb|CBY16618.1| putative DNA polymerase III alpha subunit [Chlamydophila psittaci
            RD1]
          Length = 1248

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1075 (33%), Positives = 566/1075 (52%), Gaps = 60/1075 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L  HS YS+L+   S+ + + K    Q P++A+TD  NL+ A+EF ++     I+PII
Sbjct: 10   IPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEFYKECQQNDIKPII 69

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC++ +          + K+       ++LL     GY+ L  L S  +  +      RI
Sbjct: 70   GCEIYVAPSSRFDKKKEKKSRVAN--HLILLCKNELGYRNLCLLSSLAFT-EGFYYFPRI 126

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L +   EGLI L+   SG + +A    S +  EK L  ++ LFG+  Y  +Q H+ 
Sbjct: 127  DRDLLSQ-HAEGLICLSACLSGSVAQAALE-SEEALEKDLRWYQNLFGEDFYSEIQLHKM 184

Query: 192  YDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             +                            V+  +    +  VATN+  ++  +D+ AH+
Sbjct: 185  SEEKIASLGEEWLKHEYYQFIDSQTKVNQAVLDASKRLGIRSVATNDIHYIHADDWLAHE 244

Query: 230  VLMAVAHSTVVSQKDRPRV----------TPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            +L+ V     +    +             + ++Y K+  EM  +F+D PE + NT+E+A 
Sbjct: 245  ILLNVQLGETIRIAKQNTYIPNPKRKTFRSREYYFKSPEEMAMLFADHPETITNTLEVAD 304

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQGAIAK- 330
            +C+  L + +   P ++     D     E E        LR     GL  +     +A  
Sbjct: 305  KCNLELNLSSKHYPIYVPDFLKDKPNYTEEERYAASSAFLRELCEKGLSTKYTPEKLAHI 364

Query: 331  ------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                      +  ++RL+ E+++I       Y LIV D I WAK N IPVGPGRGSGAGS
Sbjct: 365  SKKFPDRDPLELVKERLEMEMSIIIPKGMCDYLLIVWDIIYWAKDNGIPVGPGRGSGAGS 424

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            V  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + VA
Sbjct: 425  VMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDNVA 484

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            QIITFG+++AK A++DVGR L +  S+V+ + K IP    +    +A+  D    E    
Sbjct: 485  QIITFGTMKAKMAVKDVGRTLDVALSKVNHIAKHIPE--LNTTLAKALETDPHLNELYTN 542

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            D    ++++++ +LEG  R+   HAAG++I    L+  +P+     S +  TQF+MK +E
Sbjct: 543  DAEAAQVIDMAMRLEGSIRNTGVHAAGVIICGDRLTNHIPICISKDSTMITTQFSMKPVE 602

Query: 565  KAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              G++K DFLGLKTLT +  ++     + G  ++++ +P DD  T+ LL    T+GIFQ+
Sbjct: 603  SVGMLKVDFLGLKTLTSIHIAIRAIEKKTGKLLEMASLPLDDKTTFALLHQGKTMGIFQM 662

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES GM++  + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++ +LK
Sbjct: 663  ESKGMQELAKNLRPDSFEEIIAIGALYRPGPMDMIPSFINRKHGKEIIEYDHPLMESILK 722

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  ++M K++ RF   A KNGI  
Sbjct: 723  ETYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAMGKKDIDQMLKERTRFCERACKNGIDA 782

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +A  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ 
Sbjct: 783  DLATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPREWLAALLTSDSDDIEKVG 842

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862
            K   +A   +I I+PP +N    DF   D  I +++ AI+G+G      I+E      P+
Sbjct: 843  KLIHEAHSMDICILPPDINESGTDFVATDKGIRFAMGAIRGIGKGLVESIIEEREKHGPY 902

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             S++DF  R D KK+ ++  E+L+ AG  D F   R     +L+++       +K     
Sbjct: 903  QSIQDFIQRSDLKKVTKKHTENLIDAGCFDVFEPDRDVAQATLESLYDSISKEKKEAATG 962

Query: 923  HENIFAHEKGTFSDKITLEKFSV---ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                F+         ITL   +     +     + E+ +LG Y + HP+D  K IL ++ 
Sbjct: 963  VMTFFSLNTMNQKHPITLTPAADVVRRSKKEILKKEKELLGIYLTEHPMDAVKDILPRLS 1022

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFFP 1033
            +    E      G  IR   ++     + + KG R    +  S+    YE   +P
Sbjct: 1023 VVSPGEFDNLPHGAVIRTIFIIDKVTTRISSKGQRKFALLRVSDGVDSYELPIWP 1077


>gi|29839841|ref|NP_828947.1| DNA polymerase III subunit alpha [Chlamydophila caviae GPIC]
 gi|29834188|gb|AAP04825.1| DNA polymerase III, alpha subunit [Chlamydophila caviae GPIC]
          Length = 1242

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1075 (33%), Positives = 570/1075 (53%), Gaps = 60/1075 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L  HS YS+L+   S+ + + K    Q P++A+TD  NL+ A+EF ++     I+PII
Sbjct: 4    IPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEFYKECRQNDIKPII 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC++ +          + K+       ++LL    +GY+ L  L S  +  +      RI
Sbjct: 64   GCEIYVAPTSRFDKKKERKSRVAN--HLILLCKNEQGYRNLCLLSSLAFT-EGFYYFPRI 120

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L +  +EGL+ L+   SG + +A    S +  EK LL ++ LFGD  Y  +Q H+ 
Sbjct: 121  DRELLSQ-HSEGLVCLSACLSGSVAQAALE-SEEALEKDLLWYQNLFGDDFYSEIQLHKM 178

Query: 192  YDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             +                            V+  +    +  VATN+  ++   D+ AH+
Sbjct: 179  SEEKIASLGEEWLKHEYHQFIEAQIKVNQAVLATSRRLGIRSVATNDIHYIHPNDWLAHE 238

Query: 230  VLMAVAHSTVVSQKDRPRV----------TPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            +L+ V     +    +             + ++Y K+  EM  +F+D PE + NT+E+A 
Sbjct: 239  ILLNVQIGETIRIAKQNTYIPNPKRKAFRSREYYFKSPEEMALLFADHPETISNTLEVAD 298

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQGAIAK- 330
            +C+  L + +   P ++ +   + Q   E E        LR     GL  +     +A  
Sbjct: 299  KCNLSLNLSSKHYPIYVPEFLKEKQTYTEEERYAASSTFLRELCEQGLFTKYTAEQLAHI 358

Query: 331  ------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                      +  ++RL+ E+++I       Y LIV D I+WAK N IPVGPGRGSGAGS
Sbjct: 359  SKKFPDRDPLELVKERLEMEMSIIIPKGMCDYLLIVWDIIRWAKDNGIPVGPGRGSGAGS 418

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            V  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + VA
Sbjct: 419  VMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDNVA 478

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            QIITFG+++AK A++DVGR L +P S+V+ + K IP    +    +A+  D    E    
Sbjct: 479  QIITFGTMKAKMAVKDVGRTLDVPLSKVNHIAKHIPEM--NTTLAKALETDPHLNELYTN 536

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            D    ++L+++  LEG  R+   HAAG++I    L+  +P+     S +  TQF+MK +E
Sbjct: 537  DSEAAQVLDMAMHLEGSIRNTGVHAAGVIICGDHLTNHIPICISKDSTMITTQFSMKPVE 596

Query: 565  KAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              G++K DFLGLKTLT +  ++     + G  ++++ +P DD  T+ LL    T+GIFQ+
Sbjct: 597  SVGMLKVDFLGLKTLTSIHIAIQAIQKKTGKLLEMASLPLDDKTTFALLHQGKTMGIFQM 656

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES GM++  + + PD  E+IIA+ +LYRPGP+D I  + +RK+GKE I   HPL++ +LK
Sbjct: 657  ESKGMQELAKNLCPDSFEEIIAIGALYRPGPMDMIPSFISRKHGKEIIEYDHPLMESILK 716

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  ++M +++ +F   A KNGI  
Sbjct: 717  ETYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAMGKKDIQQMLQERTKFCERACKNGIDA 776

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +A  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ 
Sbjct: 777  DLATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDSDDIEKVG 836

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862
            K   +A   +I I+PP +N    +F   D  I +++ AI+G+G      I+E      P+
Sbjct: 837  KLIHEAHSMDICILPPDINESGTNFVATDKGIRFAMGAIRGIGKGLVESIVEEREKHGPY 896

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             S++DF  R D KK+ ++  E+L+ AG  D F   R     +L+ +       +K     
Sbjct: 897  QSIQDFIQRSDLKKVTKKHTENLIDAGCFDVFESDRDVAQATLETLYDTISKEKKEAATG 956

Query: 923  HENIFAHEKGTFSDKITLEKFS---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                F+        ++ L   +     +     + E+ +LG Y + HP+D  K IL ++ 
Sbjct: 957  VMTFFSLNTMHQEHRVALPPATNVVRRSKKEILKKEKELLGIYLTEHPMDAVKDILPQLS 1016

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFFP 1033
            +    E      G+ IR   ++     + + KG R    +  ++    YE   +P
Sbjct: 1017 VVNSGEFENLPHGSVIRTIFIIDKVTTRISSKGQRKFALLRVNDGVDSYELPIWP 1071


>gi|329942392|ref|ZP_08291202.1| DNA polymerase III, alpha subunit [Chlamydophila psittaci Cal10]
 gi|325506690|gb|ADZ18328.1| DNA polymerase III subunit alpha [Chlamydophila psittaci 6BC]
 gi|328815302|gb|EGF85290.1| DNA polymerase III, alpha subunit [Chlamydophila psittaci Cal10]
 gi|328914265|gb|AEB55098.1| DNA polymerase III, alpha subunit, form 1 [Chlamydophila psittaci
            6BC]
          Length = 1242

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1075 (33%), Positives = 566/1075 (52%), Gaps = 60/1075 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L  HS YS+L+   S+ + + K    Q P++A+TD  NL+ A+EF ++     I+PII
Sbjct: 4    IPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEFYKECQQNDIKPII 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC++ +          + K+       ++LL     GY+ L  L S  +  +      RI
Sbjct: 64   GCEIYVAPSSRFDKKKEKKSRVAN--HLILLCKNELGYRNLCLLSSLAFT-EGFYYFPRI 120

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L +   EGLI L+   SG + +A    S +  EK L  ++ LFG+  Y  +Q H+ 
Sbjct: 121  DRDLLSQ-HAEGLICLSACLSGSVAQAALE-SEEALEKDLRWYQNLFGEDFYSEIQLHKM 178

Query: 192  YDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             +                            V+  +    +  VATN+  ++  +D+ AH+
Sbjct: 179  SEEKIASLGEEWLKHEYYQFIDSQTKVNQAVLDASKRLGIRSVATNDIHYIHADDWLAHE 238

Query: 230  VLMAVAHSTVVSQKDRPRV----------TPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            +L+ V     +    +             + ++Y K+  EM  +F+D PE + NT+E+A 
Sbjct: 239  ILLNVQLGETIRIAKQNTYIPNPKRKTFRSREYYFKSPEEMAMLFADHPETITNTLEVAD 298

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQGAIAK- 330
            +C+  L + +   P ++     D     E E        LR     GL  +     +A  
Sbjct: 299  KCNLELNLSSKHYPIYVPDFLKDKPNYTEEERYAASSAFLRELCEKGLSTKYTPEKLAHI 358

Query: 331  ------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                      +  ++RL+ E+++I       Y LIV D I WAK N IPVGPGRGSGAGS
Sbjct: 359  SKKFPDRDPLELVKERLEMEMSIIIPKGMCDYLLIVWDIIYWAKDNGIPVGPGRGSGAGS 418

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            V  + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G + VA
Sbjct: 419  VMLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDNVA 478

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            QIITFG+++AK A++DVGR L +  S+V+ + K IP    +    +A+  D    E    
Sbjct: 479  QIITFGTMKAKMAVKDVGRTLDVALSKVNHIAKHIPE--LNTTLAKALETDPHLNELYTN 536

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            D    ++++++ +LEG  R+   HAAG++I    L+  +P+     S +  TQF+MK +E
Sbjct: 537  DAEAAQVIDMAMRLEGSIRNTGVHAAGVIICGDRLTNHIPICISKDSTMITTQFSMKPVE 596

Query: 565  KAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
              G++K DFLGLKTLT +  ++     + G  ++++ +P DD  T+ LL    T+GIFQ+
Sbjct: 597  SVGMLKVDFLGLKTLTSIHIAIRAIEKKTGKLLEMASLPLDDKTTFALLHQGKTMGIFQM 656

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            ES GM++  + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPL++ +LK
Sbjct: 657  ESKGMQELAKNLRPDSFEEIIAIGALYRPGPMDMIPSFINRKHGKEIIEYDHPLMESILK 716

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK  ++M K++ RF   A KNGI  
Sbjct: 717  ETYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAMGKKDIDQMLKERTRFCERACKNGIDA 776

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +A  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ 
Sbjct: 777  DLATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPREWLAALLTSDSDDIEKVG 836

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862
            K   +A   +I I+PP +N    DF   D  I +++ AI+G+G      I+E      P+
Sbjct: 837  KLIHEAHSMDICILPPDINESGTDFVATDKGIRFAMGAIRGIGKGLVESIIEEREKHGPY 896

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             S++DF  R D KK+ ++  E+L+ AG  D F   R     +L+++       +K     
Sbjct: 897  QSIQDFIQRSDLKKVTKKHTENLIDAGCFDVFEPDRDVAQATLESLYDSISKEKKEAATG 956

Query: 923  HENIFAHEKGTFSDKITLEKFSV---ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                F+         ITL   +     +     + E+ +LG Y + HP+D  K IL ++ 
Sbjct: 957  VMTFFSLNTMNQKHPITLTPAADVVRRSKKEILKKEKELLGIYLTEHPMDAVKDILPRLS 1016

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFFP 1033
            +    E      G  IR   ++     + + KG R    +  S+    YE   +P
Sbjct: 1017 VVSPGEFDNLPHGAVIRTIFIIDKVTTRISSKGQRKFALLRVSDGVDSYELPIWP 1071


>gi|328955785|ref|YP_004373118.1| DNA polymerase III, alpha subunit [Coriobacterium glomerans PW2]
 gi|328456109|gb|AEB07303.1| DNA polymerase III, alpha subunit [Coriobacterium glomerans PW2]
          Length = 1274

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/1147 (29%), Positives = 543/1147 (47%), Gaps = 133/1147 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF----------- 58
            +FVHL  HS YS+L+GA  + +++++      PA+A+TD   ++   +            
Sbjct: 2    AFVHLHNHSEYSMLDGATRIEDMVERAVELGMPAVALTDHGYMYGIPQLALACNKVNHDM 61

Query: 59   -------SQKA--------------------------------CAAG----------IQP 69
                      A                                   G          I+P
Sbjct: 62   PEYRVWSHDAAFLAKGRGDELEDPDARSDPRGHAQHLRDMQAWREHGSLESVRPRPLIKP 121

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I GC++     + L   ++     P +  ++LL     GY  L++LVS    +       
Sbjct: 122  IFGCEVYFTPDETLARDHK-----PELYHLILLARNEVGYVNLMQLVSEA-AVSGFYYKP 175

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            R+ L  L+    EG+I  +   +G I R     +++ A     TF+ LF     Y+ +Q 
Sbjct: 176  RVTLDNLRR-HREGIIGSSACLAGVIPRCIDEGNTEQAIIWAETFRDLFEPGSFYIEIQE 234

Query: 189  HRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            H         D     Q++++A    + ++ATN+  +L+  D    D+++ +  +  +  
Sbjct: 235  HGITTDAGMTDEQLSHQLIEIAARVGVKVIATNDFHYLTRADAPVQDLMLCIGTNAKMDD 294

Query: 243  KDRPRVTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             +R R+    +      EM ++F   PEAL+NTVE+A RC   L   + ILPRF      
Sbjct: 295  PNRMRMQGSEFYMKSEEEMRALFPYCPEALDNTVELAERCEVELDWDSIILPRFP---GL 351

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D  +  E++ R +   GL  R       +     +  +R ++E  VI    F+ YFLIVA
Sbjct: 352  DEGETHESQFRRECERGLARRYGDDWREREISGVNIAERFEYEYRVICDKGFAAYFLIVA 411

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D+++WAK+N I VGPGRGS AG++ AYA+ IT  DPL   L+FERFL+P+R  MPD D+D
Sbjct: 412  DYVRWAKENGIGVGPGRGSAAGAIVAYAMDITTFDPLENGLMFERFLSPERAEMPDIDMD 471

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR EV+ YV+ +YG ++V  +IT+ +++AK A+ D  R L  P S   RL K+I +
Sbjct: 472  FDDERRLEVVEYVRGRYGADKVTHVITYSTIKAKQAINDAARVLDYPVSTGQRLSKMISS 531

Query: 482  DPAHPVSLQAIAD-------DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
             P+  +S             +  F +A   D    R+++ +  +EGL R    HA  ++I
Sbjct: 532  APSVKLSQVLKQQKKKEELYNPDFADAYRGDDDARRIIDAALSIEGLTRGEGVHACAVLI 591

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               P+++ VP   D +  + +TQ+    +   GL+K DFLGL+TLT++ K+   +     
Sbjct: 592  CRDPVNEHVPTKLDTKGGVEITQYEGHTVADMGLLKMDFLGLRTLTVISKAKANILANFG 651

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +VD+  IPFDD   + L+    T G+FQ+ES+GM   ++ M+P   + ++AL++LYRPG
Sbjct: 652  TEVDVDAIPFDDPAIFELMAAGRTAGVFQVESAGMTATIKNMRPSEFKHVVALIALYRPG 711

Query: 654  PIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+   +   Y +R +G++K+V     + P+L+ET G I+YQEQVMQI+  +SG++  E+D
Sbjct: 712  PLGAGMVADYIDRMHGRKKVVYYDNRLAPLLEETYGTIVYQEQVMQISMHMSGFTAGESD 771

Query: 712  VLRRAMGK------------KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
             +R+A+ K                  +  ++ +++GA +N  S+ IA  I+  + KFA+Y
Sbjct: 772  KVRKAVAKKHIELMETVVQHWDDGTDETMQDHWMNGAVRNDFSRAIAEQIWADVLKFAEY 831

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSH+A YA++  QTAW+K HYP E++AA +T      EKI  +    R   I+++PP
Sbjct: 832  AFNKSHSAGYAILVMQTAWLKAHYPYEYMAAVLTSFTGKTEKIVHYISACRHEGIEVLPP 891

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLN 878
             +N    DF      I + LA I+GVG   AR I+E       F +L D+  R+D    N
Sbjct: 892  DINESNKDFTAVHEGIRFGLAGIRGVGEGVARTIIEERERGGAFKNLHDYMERLDPACAN 951

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDN-----IQKYAQWVEKNRTNKHENIF----AH 929
            RRV E+L+ AGA D  G+ R QL+  +D      I        K R     + F      
Sbjct: 952  RRVCEALIKAGAFDASGFPRRQLMGFIDKNNPENILDAVVRRNKTRATGQVSFFDVLGDV 1011

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--- 986
            E   F  K+        +   +   E+ VLG Y S HPL  Y+  L +       +    
Sbjct: 1012 EGSGFEVKVPEPDGQEWDRHTKLAQEREVLGIYVSDHPLRPYECALARARDYALSQIEVG 1071

Query: 987  --------------------VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
                                 A         A MV    ++ T+ G  +  V   +   E
Sbjct: 1072 EEIDAALGGDAPTASAPAAGQAIPEDRAFWFAGMVADVSKRVTKNGDAMAIVRLEDMEGE 1131

Query: 1027 YEANFFP 1033
                 FP
Sbjct: 1132 ATVVVFP 1138


>gi|225163584|ref|ZP_03725893.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2]
 gi|224801819|gb|EEG20106.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2]
          Length = 1183

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/968 (35%), Positives = 521/968 (53%), Gaps = 46/968 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +     F+HL VH+ YSLL+G+  ++ ++ +     Q AIA+TD  N+F A+ F  +A  
Sbjct: 1   MPSPSDFIHLHVHTDYSLLDGSCRVDRLMSRAKELGQTAIALTDHGNMFGAISFYNEAKK 60

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGI+P+IGC+  I     L+ T + +    +   + +L    EGYQ L++LVS  +L   
Sbjct: 61  AGIKPLIGCEFYIAPGSRLEKTGKSEDGK-SYYHLGVLARNLEGYQNLLKLVSDAHLKG- 118

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                R  L  L    ++GLI  TG  +  + +    +  + A      + ++FG +  +
Sbjct: 119 FYYKPRADLETLARY-SKGLIGFTGCLASEVCQNLMHDRFEDARAACARYVEIFGRENYF 177

Query: 184 VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           V +Q H   ++      +++L     L ++ATN+  ++  ED   HD L+ +     +++
Sbjct: 178 VEIQDHGIPEQRKIIPGLLKLGEEFGLKVIATNDVHYIRSEDANPHDALLCIQTGAKLAE 237

Query: 243 KDRPRVTPDHYLKNR--SEMVSIFSDLPEALENTVEIARRCSFILQVHA--PILPRFIEK 298
           ++R +     +              +LPE+L NT+ +A  C   +         PR+   
Sbjct: 238 ENRMKFDTQEFYLKSRDEMFKIFGRELPESLTNTLAVAEMCDLSIPFPKGSERYPRYPLP 297

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH--------------------AQDYR 338
                +      L    V GL+ R                                 DY 
Sbjct: 298 AEIKARYSASQYLHQLCVEGLKHRYGHDHDPVALRPVVAERLAKLHNLAPGQKPAPPDYT 357

Query: 339 Q---------RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
           +         R+ +E  +I    F  YFL+V DFI WAK++ IPVGPGRGSGAG + AY 
Sbjct: 358 ELAPEEVLVLRMGYEQAIINVTGFVDYFLVVWDFINWAKQHTIPVGPGRGSGAGCLVAYL 417

Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
           L IT+IDP+RF LLFERFLNP+R+S PDFDIDFC  RR+EVI YV+ KYG++ VA IIT+
Sbjct: 418 LGITNIDPIRFGLLFERFLNPERVSPPDFDIDFCMRRREEVINYVRQKYGNDCVANIITY 477

Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
           G+L AK A+RD+ R   + ++  DR+ K+IP +    +   +I      R     +P   
Sbjct: 478 GTLGAKMAIRDIARVHDLAFADADRISKMIPEEIGISLE-DSIKKSEELRTEISRNPMTK 536

Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
           R+++ +  +EGL R+   HAAGI+I D+PL   VP+    +      QF+M  I K GL+
Sbjct: 537 RIIDTALVVEGLVRNTGKHAAGIIITDQPLDDFVPL--TSQEGDVTVQFDMGAITKLGLL 594

Query: 570 KFDFLGLKTLTLLQKSLDFLAQR---GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
           K DFLGLKTLT++  ++D +          D+  IP DD +TY LL    T+G+FQLES 
Sbjct: 595 KMDFLGLKTLTIISDAVDNVRHTVPGQKDFDIDTIPLDDPKTYELLNAGKTVGVFQLESP 654

Query: 627 GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
           GM+ A   +    ++DI A+ +LYRPGP+  I  Y   K     I   H L++P+LKET 
Sbjct: 655 GMQNASRQVGISTVDDINAISALYRPGPMQFIPDYARGKKDPANITYPHKLLEPVLKETF 714

Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS-KNGISKTI 745
           G+I+YQEQVM+ A++++GY+L  AD+LRRAMGKK  E M +++ +F+SGA   + I +  
Sbjct: 715 GIIVYQEQVMECARVIAGYTLGGADMLRRAMGKKDAEAMAQERVKFVSGAKEHHNIDEKK 774

Query: 746 AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
           A  IF+LL KFA YGFNKSH+AAYAV++YQTA++K +YPV+F+AA +T E+ N EK+  F
Sbjct: 775 ANEIFDLLNKFAQYGFNKSHSAAYAVVAYQTAYLKANYPVQFMAAVLTAELGNAEKVAHF 834

Query: 806 CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDS 864
             +A    + ++ P +N    +F    ++I + LA IKGVG   ++ I+    A+ P+  
Sbjct: 835 IAEAEAMGLTVLGPDINESGANFTPVGDKIRFGLAGIKGVGEGASQKIIAEREANGPYKD 894

Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            +DF  RVD+K  N+RVLE L   GA D  G SR  +   +D     A    K+R     
Sbjct: 895 FDDFTLRVDNKSANKRVLEHLAKTGAFDFSGESRKAIFARVDAALASAVLQAKDRAAGQS 954

Query: 925 NIFAHEKG 932
             F   + 
Sbjct: 955 GFFDLLEA 962


>gi|319779485|ref|YP_004130398.1| DNA polymerase III alpha subunit [Taylorella equigenitalis MCE9]
 gi|317109509|gb|ADU92255.1| DNA polymerase III alpha subunit [Taylorella equigenitalis MCE9]
          Length = 1178

 Score =  671 bits (1730), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/1068 (35%), Positives = 601/1068 (56%), Gaps = 57/1068 (5%)

Query: 5    LE--KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            +       FVHL+ H+ +S+ +G + +  ++ K+ +   PAIAI+D  NLF  ++F + A
Sbjct: 1    MTTLNPKQFVHLRCHTEFSVFDGTIRIEELISKVQSVGMPAIAISDLANLFGFVKFYKGA 60

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               GI+PI  C   +D Q                  I ++ +  +GY RL E++S+++L 
Sbjct: 61   RKLGIKPIAACDFVLDTQG----------VSGEAHRIEIIATNNKGYLRLCEIISKVWLE 110

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            ++G    R+   WL +    GLI L+GG  G I +A F N    A K L  + + F D  
Sbjct: 111  NEGLDVARLKKEWLTDTS--GLIALSGGIYGDIGQALF-NKPIEAPKLLEDWVERFPDGF 167

Query: 183  YVNLQRHRGYDRYRESQV-----------VQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            Y+ LQR       R S+            VQLA    +P+VAT+   FL  + +++HDV 
Sbjct: 168  YIELQRELPDQHGRYSKFGQLSNEYSEMAVQLAAKFGVPVVATHPIQFLESDGFDSHDVR 227

Query: 232  MAVAHSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            + +A    +S   R  R + + Y  +  +M  +F D+P A+ NT EIA+RC+  L++  P
Sbjct: 228  VCIAEGEFLSDPKRKQRFSREQYFYSPEQMCKLFEDIPSAITNTFEIAKRCNITLKLGKP 287

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             LP F   E   +  E    L  + +A     L      +   A  Y+ RL+ E+ VI  
Sbjct: 288  QLPIFPTPEGVSVD-EYFAYLAKEGLAKRLEFLFPDEAIRKEKAPIYQARLNKEIEVIES 346

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F+GYFLIV DFI W K N +PVGPGRGSGAGS+ AY+L IT +DPL++ LLFERFLNP
Sbjct: 347  MGFTGYFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYSLGITGLDPLQYDLLFERFLNP 406

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFD+DFCQD R++VI YV +KYG + V+QI+TFG+L A+A ++DVGR +Q+PY+
Sbjct: 407  ERVSMPDFDVDFCQDNREKVIDYVIDKYGEDSVSQIVTFGTLGARAVVKDVGRVMQVPYA 466

Query: 471  QVDRLCKLIPNDPAHPVS-LQAIADDSRFREARLADP----SVDRLLEISQKLEGLYRHA 525
              D L KLIPN P  P +  +A+ +    ++           +  +++ S K+EGL R+ 
Sbjct: 467  VCDELSKLIPNSPVDPYTLQRALNEIKDIQDLYNNSEGDSSDIKTVVDYSLKIEGLTRNT 526

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
             THA G++I    L+   P++R   S   V+Q++   IE  GL+KFDFLGL+ LT+L  +
Sbjct: 527  GTHAGGVLIAPGKLTDFTPLHRLPGSTTAVSQYDKNDIEDVGLVKFDFLGLRNLTILDWT 586

Query: 586  LDFLAQR---GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            + ++ +        DL  +P DD  TY LL+   T  +FQLES GM+  L  ++P   ED
Sbjct: 587  VRYVKEFNEAQKDFDLDRLPLDDKATYKLLSDGNTTAVFQLESDGMKNLLMKLKPSTFED 646

Query: 643  IIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            I+A+++LYRPGP+++ +   + +RK+G+ K+   H  ++ +LK T GVI+YQEQVM I+Q
Sbjct: 647  IVAVLALYRPGPLNSGMVDDFVDRKHGRAKVDYFHKDLESVLKPTYGVIVYQEQVMLISQ 706

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            ++ GYSL  AD+LRRAMGKK  EEM +Q+E F  GA + G    +A N+F+L+  FA YG
Sbjct: 707  IIGGYSLGGADILRRAMGKKKLEEMARQREIFQKGAMERGYDPNLATNLFDLMEMFASYG 766

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSH+ AYA+I+YQTAW+K ++P EF+AA+MT +M++ +K++ F +D     ++++ P+
Sbjct: 767  FNKSHSVAYALIAYQTAWLKAYHPAEFMAATMTSDMNDTDKVQIFWEDCIHNGLKLLAPN 826

Query: 821  VNTPCVDFKVGDNR----------IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFC 869
            +NT    F+   +           I Y L AIKGVG      I++A      F SL+D  
Sbjct: 827  INTSYYRFEPVKDEQSNLGLPPKTIGYGLGAIKGVGQNVVEEIVKARNEGGDFISLQDLI 886

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             RVD   + +R +E+L+ +GA+D    +R  L+  +D+   Y    +   +    ++FA 
Sbjct: 887  KRVDRTIVTKRSIEALIKSGAMDVLDKNRALLMAMVDDC--YIAANQAEESKDQWDLFAD 944

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
            ++G   +    E           + E+  +GFYFS     V++  +RK      +   + 
Sbjct: 945  DEGGAIEVSVPEGIEAWTLKEVLDAERESIGFYFSNDLFGVWRSEVRKFIKTPIKNLGS- 1003

Query: 990  IRGNNIRLAAMVVSKQQKKTR---KG-SRIGWVTFSEPAKEYEANFFP 1033
                 + +A ++ + +   ++   KG +R+ ++T  + ++  E    P
Sbjct: 1004 -NQGALSIAGVLTNLRINISKNSDKGDNRLIFLTLDDGSETVEVFCPP 1050


>gi|326387647|ref|ZP_08209253.1| DNA polymerase III, alpha subunit [Novosphingobium nitrogenifigens
            DSM 19370]
 gi|326207693|gb|EGD58504.1| DNA polymerase III, alpha subunit [Novosphingobium nitrogenifigens
            DSM 19370]
          Length = 1196

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 447/1065 (41%), Positives = 630/1065 (59%), Gaps = 40/1065 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P FV L+V SSY++L+GA+    I    A    PAIAITD N L+ ++ F++    
Sbjct: 1    MPHAP-FVSLRVFSSYTMLDGAVDPKVIAKTAAERGFPAIAITDRNGLYGSVAFAKACKD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QP+IG  L +   +    T       PT+  + L    + GY  +  LVSR +L   
Sbjct: 60   VGVQPVIGTMLAVARPERGGATTTFGPQAPTIDWLALYAQDSTGYDNICHLVSRAHLDRP 119

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             + +  + +  L    T+GL+ L+ G  G I R         AE        LF DR Y+
Sbjct: 120  LEFAPHVRVEDLA-GHTDGLLCLSAGGEGAITRLLAEGQQDAAEAYADEIAGLFPDRFYI 178

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L R     +   E  ++ LAY  + PLVATN + F     Y AHD ++ +A ST V   
Sbjct: 179  ELARRGDPVEERAEDALIDLAYARDWPLVATNPACFAERAFYPAHDAMLCIASSTHVDSA 238

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR--------- 294
            DRPR + + ++K    M  +F D+PEAL NT+ +A+RC+ +     PILP          
Sbjct: 239  DRPRSSVEWWIKPAPVMEELFKDIPEALANTLVVAQRCAAMPPKRKPILPSLAGDKEGEA 298

Query: 295  -------------FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YR 338
                          +         EE + L      G  V     A++      +   YR
Sbjct: 299  RMCAADSRTGLVARLMPYYPADTHEELSALLTMGPEGEPVEAEFPALSAAGIFGEVCNYR 358

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             RL+FE+ +I RM F GYFLIVADFI+WAK+++IPVGPGRGSGAGS+ A+ALTITD+DP+
Sbjct: 359  HRLEFEIGIINRMGFGGYFLIVADFIKWAKEHSIPVGPGRGSGAGSLVAWALTITDLDPI 418

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
            R  LLFERFLNP+R+SMPDFDIDFC+ RR EVIRYVQ KYG + VAQIITFG L+A+A L
Sbjct: 419  RLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQRKYGEDHVAQIITFGKLKARAVL 478

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQK 517
            RD GR LQM Y QVDRLCK++PN P  P    +A+   +  +     DP V RL++++ +
Sbjct: 479  RDTGRILQMSYGQVDRLCKMVPNHPTDPWPLPRALNGVAELKREYDRDPEVRRLIDLAMQ 538

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R++STHAAG+VIGDRPL+QLVP+YRD RSD+PVTQF+MK +E AGL+KFDFLGLK
Sbjct: 539  LEGLPRNSSTHAAGVVIGDRPLAQLVPLYRDPRSDMPVTQFDMKHVEDAGLVKFDFLGLK 598

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            TL++L+K++D L +RG+++DLS + +DD + Y LL +  T+G+FQLES GMR+ L  ++P
Sbjct: 599  TLSVLRKAVDLLGKRGIQIDLSTLGWDDAQVYRLLQSGDTVGVFQLESEGMRRTLAAVKP 658

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
                DIIALVSLYRPGP+DNI ++  RKNG E+I   H  +  +L ET G+ +YQEQVMQ
Sbjct: 659  TNFGDIIALVSLYRPGPMDNIPLFGRRKNGLEEIEYPHDKLAGILSETYGIFVYQEQVMQ 718

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT-IAVNIFELLAKF 756
             AQ+L+GYSL +AD+LRRAMGKKI+ EMD+Q+ RF++G  +        A  +F+L+ KF
Sbjct: 719  AAQILAGYSLGDADLLRRAMGKKIQAEMDQQRARFVAGCKEVSQIDAGKANELFDLIDKF 778

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A YGFNKSHAAAYA+++YQTAW+KTHYP EF AA+M  +M   EK+  F  D R+    +
Sbjct: 779  AGYGFNKSHAAAYALLAYQTAWLKTHYPHEFYAAAMCFDMHQSEKLNIFVDDMRRNGFAL 838

Query: 817  MPPSVNTPCVDFKVGDN----RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR 871
              P +N    +F V        + Y+LA ++ VG      I+    A+ PF +L++   R
Sbjct: 839  AGPDINRSVAEFTVERTEESYAVRYALAGLRNVGEKAMEAIVAEREANGPFQTLDELFRR 898

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            + +  +NRR LE+L   GALDC   +R +L+ + + +   A    + RT+    +F  + 
Sbjct: 899  LPAGAMNRRQLEALAAGGALDCLEPNRAKLIANAELLMAVADEASRARTSGQGGLFGGD- 957

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV---- 987
                    L +    + + +   E+   GFYF+ HP++ Y+ I    G + Y   +    
Sbjct: 958  DHVEQATRLVETKPWSRAEQMAAERENFGFYFAAHPVEEYRAISSANGARTYASLMMGGG 1017

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +AA+V   Q++KT++G       FS+ +  + A  F
Sbjct: 1018 TATGRTGAVMAALVEGVQKRKTKRGKDFVMADFSDKSGLFSACCF 1062


>gi|56477932|ref|YP_159521.1| DNA polymerase III alpha chain [Aromatoleum aromaticum EbN1]
 gi|56313975|emb|CAI08620.1| DNA polymerase III alpha chain [Aromatoleum aromaticum EbN1]
          Length = 1164

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/1061 (38%), Positives = 599/1061 (56%), Gaps = 64/1061 (6%)

Query: 5    LEKS--PSFVHLQVHSSYSLLEGALSLNNILDKIAA-----------DQQPAIAITDTNN 51
            +  S  P F+HL++HS YS+ +G      I+    A                  I+D  N
Sbjct: 1    MTASHEPCFIHLRLHSEYSISDG------IVQIDQAIARAAADAMPALG-----ISDLAN 49

Query: 52   LFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
            LF  ++F + A   G++P++G    I                      +L+    +GY +
Sbjct: 50   LFGMVKFYKGARGKGMKPVVGVDTWITND----------ADRDKPFRALLICRNRKGYGQ 99

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L EL++R YL ++ +    +   W  +     L+ L+G   G I +A    +  VAE+  
Sbjct: 100  LCELLTRAYLDNKYRSRAEMHRQWFADGAASDLLCLSGAMGGDIGQALVNGNPDVAERLA 159

Query: 172  LTFKKLFGDRLYVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
              + +LF D  Y+ LQR  H G + Y   Q VQLA    LP+VAT+   FL  ED++AH+
Sbjct: 160  AEWAQLFPDAFYIELQRAGHPGTEAYI-RQAVQLAGKLGLPVVATHPVQFLEPEDFKAHE 218

Query: 230  VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              + +A   V++ K RPR  T + Y K++ EM ++F+D+PEALEN+VEIARRCS  +Q+ 
Sbjct: 219  ARVCIAQGYVLADKRRPRDFTEEQYFKSQDEMCALFADIPEALENSVEIARRCSLTVQLG 278

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFEL 345
               LP+F   E        +  L  +A +GLEVRLA+   A+    +    Y  RL FE 
Sbjct: 279  KNFLPQFPTPEGM----TLDEFLVAEAKSGLEVRLAELYPAEAERERQRRTYEDRLKFET 334

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            + I +M F GYFLIVADFI WAK+N +PVGPGRGSGAGS+ AY+L ITD+DPL ++LLFE
Sbjct: 335  DTIVQMGFPGYFLIVADFINWAKENGVPVGPGRGSGAGSLVAYSLRITDLDPLAYALLFE 394

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFLNP+R+SMPDFDIDFCQD R  VI YV+++YG E V+QI TFG++ +KA +RDVGR L
Sbjct: 395  RFLNPERVSMPDFDIDFCQDNRYRVIEYVRSRYGKEAVSQIATFGTMASKAVVRDVGRVL 454

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDS----RFREARLADPSVDRLLEISQKLEGL 521
             +PY   DRL KLIP + A PVSL    +         +      SV  L  +++ LEGL
Sbjct: 455  DLPYGLCDRLSKLIPIEGAKPVSLAKAYEMESQIGEMMKDGNDGESVQELWSLAEPLEGL 514

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
             R+   HA G++I    L+   P+Y     +  PV+QF+   +E  GL+KFDFLGL+ LT
Sbjct: 515  SRNVGMHAGGVLIAPGKLTDFCPLYIADGDEATPVSQFDKDDVEAVGLVKFDFLGLRNLT 574

Query: 581  LLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            +++ +++++ +  G K DL+ +PF D   Y +L    T  IFQ+ES GM++ L+ + PD 
Sbjct: 575  IIELAVEYVERLTGEKPDLAALPFTDPAAYQILKDANTTAIFQVESEGMKKLLKKLAPDR 634

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
             EDIIA+++LYRPGP+ + +V +     K  ++I   HP + P L  T GVI+YQEQVMQ
Sbjct: 635  FEDIIAVLALYRPGPLGSGMVDDFILRKKGQQEIDYFHPDLKPCLDPTYGVIVYQEQVMQ 694

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            I+Q++ GY+L  AD+LRRAMGKK  EEM K +E   +GA + G    +A  +F+L+ KFA
Sbjct: 695  ISQIIGGYTLGGADMLRRAMGKKKAEEMAKHRETIAAGAKQKGYDPALAEQLFDLMTKFA 754

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            +YGFNKSH AAYAV++Y TAW+K H+   F+AA+M+ ++DN + I+ F +DA    + I+
Sbjct: 755  EYGFNKSHTAAYAVVTYHTAWLKAHHCAAFMAATMSADLDNTDTIRIFFEDAVANGVTIL 814

Query: 818  PPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSK 875
            PP VN     F   D   I Y L A+KG G    R I+ A  A   F  L DFC+RVD +
Sbjct: 815  PPDVNASDFRFVPTDRKTIRYGLGAVKGAGEPAVRAILAAREAGGAFRDLFDFCARVDRR 874

Query: 876  KLNRRVLESLVFAGALDCFGY----SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
             +NRRV+E+L+ AGA D         R +LL ++    + A+    N       +F    
Sbjct: 875  AVNRRVIEALIRAGAFDLIEPSGTADRARLLATVGLAMEAAEQAAANAMQG--GLFDLIP 932

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                      +    +   R + E+  +GF+ SGHP + ++  +R+   +   E   +  
Sbjct: 933  EAAGAAPEYVRARPWSERERLKEEKLAIGFFLSGHPFNSFRKEVRRFVRRPLAELEPSRD 992

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               + LA +V+  + K T +G  + +V   + +   E + F
Sbjct: 993  --LLMLAGVVMDVRTKMTGRGK-MAFVVLDDGSHVREVSVF 1030


>gi|121605816|ref|YP_983145.1| DNA polymerase III subunit alpha [Polaromonas naphthalenivorans CJ2]
 gi|120594785|gb|ABM38224.1| DNA polymerase III, alpha subunit [Polaromonas naphthalenivorans CJ2]
          Length = 1173

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/1045 (39%), Positives = 599/1045 (57%), Gaps = 36/1045 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ +S+++G   ++ I+   AADQQPA+AITD +NLF  ++F ++    G++P+
Sbjct: 5    FVHLRIHTEFSVVDGTNRIDEIVAAAAADQQPALAITDLSNLFGTVKFYKEGRKTGVKPL 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + ++          GK        ++LLV  ++GY  L EL++R +  +  +    
Sbjct: 65   IGADIWLE--------APGKEAGAPASRLLLLVQDSQGYLNLCELITRAWTKNVVRDQAV 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L WLQE+  EGLI L+G   G + +A     S  A +  L    +F  R Y+ LQR  
Sbjct: 117  VKLQWLQEL-NEGLIALSGAQRGAVGQALVQGDSARAMECALHLSGMFPRRFYLELQRSG 175

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
               D    +  VQLA   +LP+VAT+   FL+ +DYEAH+  + ++   ++    R R  
Sbjct: 176  HPEDERHVTAAVQLAARLKLPVVATHPVQFLTYDDYEAHEARVCISEGEILGNARRVRKF 235

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + Y K+  +M ++F+D+P AL NTVEIA+RCS  L++  P+LP F   E +  +   E
Sbjct: 236  TREQYFKSADQMKALFADVPSALANTVEIAKRCSLTLELGKPMLPEFPTPEVNGSRMPPE 295

Query: 309  NELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +  R+ +  GLE     L      +     +Y  RL+FE+N I +M F GYFLIV DFIQ
Sbjct: 296  DYFRHTSFEGLEERLLHLYPNPAQRDAKRPEYVARLEFEINTILKMGFPGYFLIVGDFIQ 355

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            WAK N  PVGPGRGSGAGS+ AYAL ITD+DPLR++LLFERFLNP+R+SMPDFDIDFCQ 
Sbjct: 356  WAKNNGCPVGPGRGSGAGSLVAYALKITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQS 415

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             RD VI YV++KYGH  V+QI+TFG++ A+AA+RDVGR L  PY   D + KLIPN P  
Sbjct: 416  NRDRVIDYVKDKYGHAAVSQIVTFGTMAARAAIRDVGRVLDFPYGFCDGISKLIPNKPGQ 475

Query: 486  PVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
             V+              + A+  +    +    +  V  LL++++KLEGL R+   HA G
Sbjct: 476  AVTLQLVPADRKKNDKMVYALEAEPVLADRESKEEDVHTLLDLARKLEGLTRNVGMHAGG 535

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            ++I    L+   P+Y    S   V+QF+   +E  GL+KFDFLGL TLT+L+ + +F+  
Sbjct: 536  VLIAPGKLTDFCPLYLQPGSTSAVSQFDKNDVEAIGLVKFDFLGLATLTILEIAREFIIA 595

Query: 592  RGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            R           +P DD   Y L     T  +FQ ES GM++ L+  +PD +ED+IA+ +
Sbjct: 596  RYPAQKDFKFEDLPLDDARVYRLFADGNTEAVFQFESIGMQRMLKDARPDRLEDLIAMNA 655

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+D I  Y  RK GKE      P + PML+ET G+++YQEQVMQ AQ+L GYSL 
Sbjct: 656  LYRPGPMDLIPTYIARKQGKEVPEYPDPRVKPMLEETYGIMVYQEQVMQTAQILGGYSLG 715

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK ++EM + +E F  GA  NG+++  A  +F+L+ KFA YGFNKSH+AA
Sbjct: 716  GADMLRRAMGKKDEKEMAQHREIFRKGAGINGLAQEKADEVFDLMEKFAGYGFNKSHSAA 775

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+++Y TAW+K H+P EF AA+MT+EMD+ +K+K    DA++  +    P +N     F
Sbjct: 776  YALLAYHTAWLKVHFPAEFFAANMTVEMDDTDKLKILFGDAQKMGLSFEVPDINQGDYRF 835

Query: 829  K-VGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLV 886
            + +    + Y L AIKG G      I+ A  +  PF SL DFC RVD  K+N+R +E+L+
Sbjct: 836  EPITAKSVRYGLGAIKGTGQQAIAAIVAARKEGGPFTSLFDFCVRVDRSKMNKRTVEALI 895

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
              GA D    +R +LL S +    +A   + N         +      + +  L +  + 
Sbjct: 896  KGGAFDSLHLNRAELLASSERAFDFAAATQANANQGGLFDMSDSHAASTQEPELVEMPMF 955

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                R   E+  +GFY SGH  D  +  +R+   +  E+   +       LA +V   + 
Sbjct: 956  GVKARLVLEKTAIGFYLSGHLFDEVEQEVRQFAKRSIEDMSESRDSQ--LLAGIVTDLRI 1013

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANF 1031
                +G  I +    +     E + 
Sbjct: 1014 INGNRGKLIIF-KLDDKTDVLEVSV 1037


>gi|119899497|ref|YP_934710.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
 gi|119671910|emb|CAL95824.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
          Length = 1172

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/1050 (38%), Positives = 600/1050 (57%), Gaps = 43/1050 (4%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
               P F+HL++H+ YS+ +G + ++  + + AAD  PA+ I+D  NLF  ++F + A   
Sbjct: 8    PHEPRFIHLRLHTEYSITDGIVQIDQAIAQAAADGMPAMGISDLANLFGMVKFYKGARGK 67

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G++PIIG    I          Q +        ++L+  + +GY +L EL+++ YL ++ 
Sbjct: 68   GVKPIIGVDAWI----------QNEAERDKPYRVLLICKSRKGYGQLCELLTQAYLENKY 117

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            +    +   W +    + L+ L+G   G + +A    +  +AE+    + +LF    Y+ 
Sbjct: 118  RGRAEMRREWFENGAADELLCLSGAFFGDVGQAIVNGNIDLAERLAADWSRLFPGAFYIE 177

Query: 186  LQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +QR  H G + Y    + Q+A   +LP+VAT+   FL+ +D++AH+  + +A   V++ K
Sbjct: 178  IQRAGHPGTETYIRHAL-QIANKLDLPVVATHPVQFLTPDDFQAHEARVCIAQGYVLADK 236

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  T   YLK++ EM ++F+D+P+ALEN VEIA+RCS  +Q+    LP F   +   
Sbjct: 237  RRPRDFTEQQYLKSQDEMCALFADIPDALENAVEIAKRCSVTVQLGKNFLPLFPTPDGM- 295

Query: 303  IQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 ++ L  +A  GLE    +L      +      Y +RL FE + I +M F GYFLI
Sbjct: 296  ---TLDDFLVQEAKKGLEERLVQLYPHPEEREKQRPRYEERLKFETDTIIQMGFPGYFLI 352

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            VADFIQW K N +PVGPGRGSGAGS+ AY+L ITD+DPL ++LLFERFLNP+R+SMPDFD
Sbjct: 353  VADFIQWGKNNGVPVGPGRGSGAGSLVAYSLKITDLDPLEYALLFERFLNPERVSMPDFD 412

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            IDFCQD R  VI YV+ +YG + V+QI TFG+L +KA +RDVGR L MPY   DRL KL+
Sbjct: 413  IDFCQDNRYRVIEYVRERYGKDAVSQIATFGTLASKAVVRDVGRVLDMPYGLCDRLSKLV 472

Query: 480  PNDPAHPVS-LQAIADDSRFREAR---LADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            P + A PVS  +A   + +  E         +V  L +++Q LEGL R    HA G++I 
Sbjct: 473  PIEGAKPVSLARAYEMEPQIGEMMKDGNDGEAVQTLWDLAQPLEGLTRGVGMHAGGVLIA 532

Query: 536  DRPLSQLVPMYRDVRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
               L+   P+Y     D  PV+QF+   +E  GL+KFDFLGL+ LT+++ +LD++ +  G
Sbjct: 533  PGKLTDFCPLYIADGDDATPVSQFDKDDVEAVGLVKFDFLGLRNLTIIELALDYVERLTG 592

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             +VDL  + F D   Y +L    T  IFQ+ES GM++ L+ + PD  EDIIA+++LYRPG
Sbjct: 593  ERVDLMSLGFQDPAAYQILKDANTTAIFQVESDGMKKLLKKLAPDRFEDIIAVLALYRPG 652

Query: 654  PIDNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+ + +V +     K  ++I   HP +   L+ T GVI+YQEQVMQI+Q++ GY+L  AD
Sbjct: 653  PLGSGMVDDFILRKKGQQEIDYFHPDLKACLEPTYGVIVYQEQVMQISQIIGGYTLGGAD 712

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK  EEM K +     GA + G    +A  +F+L+ KFA+YGFNKSH AAYAV
Sbjct: 713  MLRRAMGKKKPEEMAKHRATIADGAKQKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAV 772

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++Y TAW+K H+   F+AA+M+ ++DN + +K F +D     I I+PP VN     F   
Sbjct: 773  VTYHTAWLKAHHCAAFMAATMSSDLDNTDTVKIFFEDTLANKIAILPPDVNESDYRFVPV 832

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEASADK----PFDSLEDFCSRVDSKKLNRRVLESLV 886
            D   I Y L A+KGVG    R I+ A A      P+  L DFC RVD + +NRRV+E+L+
Sbjct: 833  DRKTIRYGLGAVKGVGEPAVRAIIAARASGGAVKPYRDLFDFCERVDRRLVNRRVVEALI 892

Query: 887  FAGALDCF----GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
             AGA+D      G  R Q+L ++    + A+    N       +F          +    
Sbjct: 893  RAGAMDTLEGHRGRDRAQVLATVPLAMEAAEQAAANALQG--GLFDLVPEAAGAALEFAD 950

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                    R + E+  +GF+ SGHP + +KP +R+   +   +   +     + +A +V+
Sbjct: 951  VRPWTERERLKEEKTAIGFFLSGHPFNAFKPEVRRFVRRTLAQLEPSRD--LVMMAGVVM 1008

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + K   +G  + +V   +     E   +
Sbjct: 1009 EARVKMGNRGKMM-FVQIDDGTTPREVAVY 1037


>gi|194333751|ref|YP_002015611.1| DNA polymerase III subunit alpha [Prosthecochloris aestuarii DSM 271]
 gi|194311569|gb|ACF45964.1| DNA polymerase III, alpha subunit [Prosthecochloris aestuarii DSM
            271]
          Length = 1190

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1075 (33%), Positives = 564/1075 (52%), Gaps = 61/1075 (5%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL  H+ YS+    +    +          ++A+TD + +F+  E    A  
Sbjct: 1    MSNI-DFVHLHTHTHYSMQSSPIFPKELFSACKKAGMESVAVTDYSAMFNMPELFSLASD 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++ IIG ++ +     L+            PS++LLV   EGY+ L  L+SR      
Sbjct: 60   AGVKLIIGSEVYL-----LEQDAHHNGRHSVSPSLILLVKNEEGYKNLCILLSRAAREGF 114

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
               +  +  S L+E    GLI L+G  +G I RA    +   A      +  +FGD  Y+
Sbjct: 115  VNATPHVDSSLLKEYHA-GLICLSGYYAGRIGRALLAGNRDEAASFTAFYHDIFGDDFYL 173

Query: 185  NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQ 242
             LQRH   +D    S  + LA  H + LVATNN  +L ++D   +  ++A+     + S 
Sbjct: 174  ELQRHFATFDDQLNSDTIALAEQHGVQLVATNNVHYLQKKDAGRYRAMVAIRTKERLSSS 233

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
              +     +HY K+  EM S+FS+    L NT  IA +CS++     P LP F+  E   
Sbjct: 234  NLQCLPNSEHYFKSSDEMASLFSNEHHELSNTAAIAAKCSYVFCQQEPRLPHFLLPEGF- 292

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
               +E   LR+    G   + A    ++G   Q    R++ EL VI  M FS YFLIV+D
Sbjct: 293  --SDEAEYLRHLTYEGAREKYA-DPESQGLTWQQVEDRIEKELGVIISMGFSSYFLIVSD 349

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             I  +++    VGPGRGS AGS+ AY   IT IDPL++ LLFERFLNP+R+SMPD DIDF
Sbjct: 350  LIAASRRLGYSVGPGRGSAAGSIIAYLTGITRIDPLKYKLLFERFLNPERLSMPDIDIDF 409

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
                +  V+ Y  +KYG + VA+++  G+L A+AA+RD GR L++P  +VDRL KL+P+ 
Sbjct: 410  TPVGKQRVLDYTVDKYGDDSVAKVVAIGTLGARAAIRDAGRVLEVPLQEVDRLAKLVPSK 469

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +  Q + + +  RE   +      L++ +  LEG  R+ S HA  +VI D PL + 
Sbjct: 470  PGTTL-QQGLDEVNELRELVESSSQNSTLMDYALALEGRARNVSMHAGAVVITDGPLEEQ 528

Query: 543  VPMY---------------------------RDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            VP+Y                            +      VTQF+  WIE AGL+K D+LG
Sbjct: 529  VPLYVSNKIETEARKFADEYNEDELERGALKSNSDEKQVVTQFDKNWIETAGLLKIDYLG 588

Query: 576  LKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L+TL ++ ++L  + +R    ++L  +P D+ + + +       GIFQ ES GM+  +  
Sbjct: 589  LETLAVIDETLHLIKKRHAEVIELETVPMDNKKAFRIFQEGKMAGIFQFESQGMQNYMMQ 648

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVV--------YNNRKNGKEKIVSIHPLIDPMLKETQ 686
            +QP  I DIIA+ +LYRPG ++  V         + +RK+ +E I  +HP+++ +LKET 
Sbjct: 649  LQPTQIGDIIAMSALYRPGALNARVDPKRNAVDLFVDRKHNREPIDYMHPMLEEILKETY 708

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVI+YQEQVMQI+Q++ G+SL++AD LR+AMGKK  E M K K  F+ GA   G+   +A
Sbjct: 709  GVIVYQEQVMQISQVMGGFSLAKADNLRKAMGKKKPEIMQKFKADFVEGAVNQGVHDKLA 768

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              IF+L+A+FA YGFNKSH+AAY V++Y TA++K HYP EF+ A +  E+ +  ++K   
Sbjct: 769  NRIFDLMAEFAGYGFNKSHSAAYGVLAYWTAYLKAHYPGEFMTAILNSEIGDTARMKHLT 828

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGD----NRIYYSLAAIKGVGTTTARHIM--EASADK 860
             +AR FNI I+PP +NT    F + D      I   L+AIK VG   AR ++       K
Sbjct: 829  DEARSFNISILPPDINTSDALFSIDDVDGLPAIRVGLSAIKQVG-NAARAVVTSRLRRKK 887

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             + +L D  + VD + +NR+ LE L+ AGALD    +R +L+ ++D   K+ Q   ++ T
Sbjct: 888  EYVNLFDLTASVDLRAMNRKALECLILAGALDSIDPNRAKLIANIDKAIKFGQLQNRSVT 947

Query: 921  NKHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                  F+ +                     S + + E++++GFY S HPLD ++     
Sbjct: 948  LGQCGFFSDDNAGGMQDSLYPDMDPADPMPDSEKLQAEKKLVGFYLSRHPLDPFRRDWEA 1007

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   ++         ++  +VVS +  + RKG+++ +    + + + +   F
Sbjct: 1008 FANLHL-DARNVQPSRQYKIIGVVVSTKPHQDRKGNQMLFGVIEDFSGKADFTVF 1061


>gi|71065735|ref|YP_264462.1| DNA polymerase III, alpha subunit [Psychrobacter arcticus 273-4]
 gi|71038720|gb|AAZ19028.1| DNA polymerase III, alpha subunit [Psychrobacter arcticus 273-4]
          Length = 1247

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1066 (36%), Positives = 602/1066 (56%), Gaps = 72/1066 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +HS YS+ +  + +  ++   AAD Q A+A+TD +NL++ ++F +    AGI+P
Sbjct: 2    AFVHLGIHSEYSITDSIVRIKPLVKAAAADNQRALALTDLSNLYATVKFYRACLGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----G 125
            IIG ++ ++ +D                 + LL    EGYQ +  +VS  +   +     
Sbjct: 62   IIGSEVIMENED---------------TRLTLLAMDNEGYQNITRIVSLGFTEGRADPVN 106

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
              +  I  S + E G  G+I+L       + +A   +  + A++ +  ++  F DRLY  
Sbjct: 107  HGTPVIKRSHILEHGA-GVIVLF-TEKSDVGQALVGSMPEKADELITEWQASFDDRLYFA 164

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            ++R +R  +       +     H +P++A N+  FL ++D++AH+  + +A S V++ ++
Sbjct: 165  IKRTNRTGEDAFIKAAIHSGAKHHIPIIAHNDVRFLEQDDFDAHEARVCIAGSYVLADQN 224

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP+  +   YLK +++M  +F+D+P+ ++NT+ +A RC+  L +   +LP F   E +  
Sbjct: 225  RPQTYSDAQYLKTQAQMQQLFADIPQVIDNTLRLATRCNVTLTLGINVLPEFPVPEGE-- 282

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIA------KGYHAQDYRQRLDFELNVIARMKFSGYF 357
                E+  R ++  GLE RL +               Q Y +RL++EL VI  M F GYF
Sbjct: 283  --TTESFFRLESQRGLENRLDKLFPVDARSDHWSDIRQRYDERLEYELKVILSMGFPGYF 340

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DP+ + LLFERFLNP+R+SMPD
Sbjct: 341  LIVMDFIRWAKANGVPVGPGRGSGAGSLVAYALNITDLDPIHYDLLFERFLNPERVSMPD 400

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC + RD VI YV   YG E V+QIITFG++ AKA +RDV RA    Y    ++ K
Sbjct: 401  FDIDFCIEGRDRVIDYVAQTYGREAVSQIITFGTMAAKAVVRDVARAQSKSYFLASKMSK 460

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGI 532
            LIP  P   +S QA+  + + ++      ++D      + E++ KLEG+ R+   HA G+
Sbjct: 461  LIPKTPGITLS-QALEQEPQLKDLISNPDNMDYEDAIEVWEMAIKLEGICRNVGKHAGGV 519

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            +I    ++    +Y D      V+QF+   +E  GL+KFDFLGL+ LT++  +++ + +R
Sbjct: 520  LIAPHKITDFSAIYCDD-EGHRVSQFDKDDVEAVGLVKFDFLGLRNLTVISAAVENINKR 578

Query: 593  GVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
              K       L  +P DD + Y LL    T  +FQLES GM++ L  +QP  IED+IA+ 
Sbjct: 579  RAKEGKEALVLEDLPLDDAKAYKLLQDAKTTAVFQLESMGMKKYLAKLQPTNIEDVIAMC 638

Query: 648  SLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +LYRPGP+D  +V  Y +RK+G+E+++  HP ++P+L+ T GVI+YQEQVMQI+Q+++GY
Sbjct: 639  ALYRPGPLDAGMVEMYIDRKHGREEVIYDHPNLEPILENTNGVIVYQEQVMQISQVMAGY 698

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            SL  AD+LRRAMGKK  EEM KQ++ F++GA+  GI +  +  +F+L+ KFA YGFN+SH
Sbjct: 699  SLGGADMLRRAMGKKKPEEMAKQRDIFVTGATAQGIDEATSGGVFDLMEKFAGYGFNRSH 758

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTP 824
            +AAY V++YQTA++K +YP EF+AA +T +M+N + +  F  D R+   + ++ PSVN  
Sbjct: 759  SAAYGVLAYQTAYLKQYYPAEFMAAVLTSDMNNTDNVVFFINDCRENFALTVVNPSVNRS 818

Query: 825  CVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVL 882
               F       I Y L AIKGVG      I+EA   + PF  L DFC RVD KK+N+R L
Sbjct: 819  EWHFVADTPTNIIYGLGAIKGVGEGAVESIVEARRREGPFKDLYDFCRRVDIKKVNKRTL 878

Query: 883  ESLVFAGALDCFGYS-------------RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            E L+ AG  D F  +             R  L+  L +  + A+   +NR     ++F  
Sbjct: 879  EGLINAGCFDDFAATLRPDLPSDEAYEIRGALMSQLPSAVQAAEQDRQNREIGMMDLFGE 938

Query: 930  EKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEES 986
              G  +    L            R + E+  LG Y +GHP+D Y+  L++       ++ 
Sbjct: 939  MDGVVA-APPLVMTPELIWGDKHRLKAEKNTLGLYLTGHPIDEYRDELKRYTSGARLDKL 997

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T    +   A +++      TR       +T  +     E + +
Sbjct: 998  ADTGYNGSCYFAGLIIDIANFGTRN-----VITLDDGTSRLEVSCY 1038


>gi|89898738|ref|YP_515848.1| DNA polymerase III subunit alpha [Chlamydophila felis Fe/C-56]
 gi|89332110|dbj|BAE81703.1| DNA polymerase III alpha subunit [Chlamydophila felis Fe/C-56]
          Length = 1241

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/1074 (33%), Positives = 563/1074 (52%), Gaps = 59/1074 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L  HS YS+L+   S+ + + K    Q P++A+TD  NL+ A+EF ++     I+PII
Sbjct: 4    IPLHCHSQYSILDATSSIKSFVAKAKEYQIPSLALTDHGNLYGAIEFYKECYQQDIKPII 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC++ +          + K+       ++LL    +GY+ L  L S  +  +      RI
Sbjct: 64   GCEVYVAPSSRFDKKKEKKSRVAN--HLILLCKNEQGYRNLCLLSSLAFT-EGFYYFPRI 120

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L +  +EGL+ L+   SG + +A    S +  EK L  ++ LFG+  Y  +Q H+ 
Sbjct: 121  DRELLSQY-SEGLVCLSACLSGSVAQAALE-SEEALEKDLRWYQSLFGEDFYSEVQLHKM 178

Query: 192  YDRYR----------------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             +                            V++ +    +  VATN+  ++  ED+ AH+
Sbjct: 179  SEEKIASLGEEWLKHEYHQFIETQTKVNQAVLETSKRLGIRSVATNDIHYIHPEDWLAHE 238

Query: 230  VLMAVAHSTVVSQKDRPRV----------TPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            +L+ V     +    +             + ++Y K+  EM ++F+D PE + NT+E+A 
Sbjct: 239  ILLNVQLGETIRIAKQNTYIPNPKRKAFRSREYYFKSPKEMANLFADHPETISNTLEVAD 298

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENE--------LRNKAVAGLEVRLAQGA---- 327
            +C+  L       P ++ +   + Q   E E        LR     GL            
Sbjct: 299  KCNLKLDFSVKHYPIYVPEFLKEKQTYTEEERYTASSAFLRELCEKGLLKYTPDKLAHIS 358

Query: 328  --IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                     +  ++R++ E+++I       Y LIV D I WAK + IPVGPGRGSGAGSV
Sbjct: 359  KKFPNRDPLELVKERMEMEMSIIIPKGMCDYLLIVWDIIHWAKAHGIPVGPGRGSGAGSV 418

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
              + L IT+I+P+RF L FERF+NP+R+S PD DID C   R+ VI Y   ++G   VAQ
Sbjct: 419  MLFLLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKNNVAQ 478

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
            IITFG+++AK A++DVGR L +  S+V+ + K IP   A     +A+  D    +    D
Sbjct: 479  IITFGTMKAKMAVKDVGRTLDVSLSKVNLIAKHIPELNA--TLSKALETDPHLNQLYADD 536

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
                ++++++ +LEG  R+   HAAG++I    L+  +P+     S +  TQF+MK +E 
Sbjct: 537  AEAAQVIDMAMQLEGSIRNTGVHAAGVIICGDHLTNHIPICISKDSTMITTQFSMKPVES 596

Query: 566  AGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
             G++K DFLGLKTLT +  ++     + G  ++++ +P DD  T+ LL    T+GIFQ+E
Sbjct: 597  VGMLKVDFLGLKTLTSIHIAIQAIQKKTGKLLEMATLPLDDKTTFSLLHQGKTMGIFQME 656

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            S GM++  + ++PD  E+IIA+ +LYRPGP+D I  + NRK+GKE I   HPLI+ +LKE
Sbjct: 657  SKGMQELAKNLRPDSFEEIIAIGALYRPGPMDMIPSFINRKHGKEVITYDHPLIESILKE 716

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+++YQEQVMQIA  L+ YSL E DVLRRAMGKK   +M +++ +F   A KNGI   
Sbjct: 717  TYGIMVYQEQVMQIAGSLASYSLGEGDVLRRAMGKKDINQMLQERTKFCERACKNGIDAD 776

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +A  IF+ + KFA YGFNKSHAAAY +I+Y TA++K +YP E+LAA +T + D++EK+ K
Sbjct: 777  LATTIFDKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDSDDIEKVGK 836

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFD 863
               +A   NI ++PP +N    +F   D  I +++ AIKG+G      I+E      P+ 
Sbjct: 837  LIHEAHSMNICVLPPDINESGTNFVATDKGIRFAMGAIKGIGKGLVESIIEEREKHGPYQ 896

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
            +++DF  R D KK+ ++  E+L+ AG  D F   R      L++I +     +K      
Sbjct: 897  NIQDFLKRSDLKKVTKKHTENLIDAGCFDVFEPDRDVAQAVLESIYESISKEKKEAATGV 956

Query: 924  ENIFAHEKGTFSDKITLEK---FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
               F+         I L               + E+ +LG Y + HP+D  K IL ++ +
Sbjct: 957  MTFFSLNTMLKEQPIVLTPTTHIVRRQKKEILKKEKELLGIYLTEHPMDAVKDILPRLSV 1016

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFFP 1033
                E  +   G  IR   ++     + + KG R    +  ++    YE   +P
Sbjct: 1017 VSPGEFESLPHGAVIRTIFIIDKVTTRISSKGQRKFALLRVNDGVDSYELPIWP 1070


>gi|295698553|ref|YP_003603208.1| DNA polymerase III alpha subunit [Candidatus Riesia pediculicola
            USDA]
 gi|291157151|gb|ADD79596.1| DNA polymerase III alpha subunit [Candidatus Riesia pediculicola
            USDA]
          Length = 1177

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/1060 (37%), Positives = 614/1060 (57%), Gaps = 46/1060 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + K P F+HL V S YS+ +G   ++ ++D+    + P+IAITD  NL   ++F + + +
Sbjct: 1    MNKEPKFIHLHVRSDYSMSDGLSRIDILIDRALELKMPSIAITDFVNLHGMIKFYELSRS 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG  + +            K  F T   + +L+   +GYQ L++L+S  Y    
Sbjct: 61   VGIKPIIGSDVIVQDLS--------KNGFETYYELTILIKDHKGYQNLVQLISLAYRDGN 112

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I   WL     EGLI+L+GG SG I +    N+    +K L  +   F +  Y+
Sbjct: 113  STMGPIIKKDWLILY-REGLILLSGGISGDIGKNILENNLSDLKKNLNFYGTYFHNHYYM 171

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST--VVS 241
             + R     +     +V+QL+   ++P+VATNN  F+ + D+ AH + +A+ +      S
Sbjct: 172  EITRTGKIEEEKYIHKVIQLSKKKKIPIVATNNVRFVFKNDFFAHKIRVAIQNGFVLSKS 231

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            +KD  R +   YL++  EM  +F D+PE+L+NTVEIA+RC+            F+     
Sbjct: 232  RKDDLRYSDQQYLRSSKEMNDLFRDIPESLKNTVEIAKRCNLQFSF-----SNFLLPVFP 286

Query: 302  DIQKEEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  E+     A +GLE    ++      +      Y QRL  E+N+I +M FSGYFL
Sbjct: 287  IKNVRIEDFFVFSARSGLEERLKKIYPDPSIRKRKRDKYDQRLSEEINIIHQMGFSGYFL 346

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV +F+ W+K+ NIPVGPGRGSGAGS+ AY+L IT++DP++F+L+FERFLN +R+SMPDF
Sbjct: 347  IVMEFVNWSKRKNIPVGPGRGSGAGSLVAYSLKITELDPIKFNLVFERFLNKERISMPDF 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDFC ++RD VI +V  KYG + V+QII FG++ A++ ++DVGRA+  PYS  +R+ KL
Sbjct: 407  DIDFCVEKRDLVIEHVIKKYGKDFVSQIIAFGTMTARSVVKDVGRAMCYPYSFTNRISKL 466

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            IP DP   +   A++ + + ++    +  V  LL+ ++KLEG+ R+ S HA GIVI  + 
Sbjct: 467  IPFDPGMTIE-HALSSEKKLKKLYENEEEVKILLDTAKKLEGIVRNVSKHAGGIVISPKK 525

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA------QR 592
            + +  P+Y D      +T  +   IEK GL+KFDFLGLKTLT+++ +++ +       ++
Sbjct: 526  IIKYFPLYYDSIGKNSLTHLDKDDIEKIGLVKFDFLGLKTLTIIRDTIEIINFHSSDLKK 585

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                DL+ I  +D  ++ LL +  T+ IFQLES GM+  +  +QPDC EDII+L++L+RP
Sbjct: 586  ITLSDLNSISLNDPMSFDLLRSAETVAIFQLESRGMKDLIRRLQPDCFEDIISLIALFRP 645

Query: 653  GPIDNIV--VYNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GP+ + +   + NRKNG EKI        H L+ P+LK T G+I+YQEQVMQIAQ+L+GY
Sbjct: 646  GPLKSGMISNFINRKNGLEKISYPEEECQHDLLKPILKNTYGIILYQEQVMQIAQILAGY 705

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            SL EAD+LRRAM KK K+EM  Q++ F     K GI + +A  +F+L+ KF+ YGFNKSH
Sbjct: 706  SLGEADILRRAMSKKNKKEMKDQRKNFERRCLKRGIDREMASRMFDLMEKFSGYGFNKSH 765

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            +AAYA+ISYQT W+K+HYP EF+AASMT EM+N++KI +   + R+  I+I+PP+VN   
Sbjct: 766  SAAYALISYQTLWLKSHYPSEFIAASMTSEMNNLDKIFELVNECRRLKIKILPPNVNQGM 825

Query: 826  VDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLE 883
              F+V  +  I Y + AIKG+G +    ++ +      F  + DFC R++ K +NR+ LE
Sbjct: 826  YFFQVNRNGEIIYGMGAIKGIGKSVIEKMISSRNKYGKFLDIFDFCRRINVKTVNRKTLE 885

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
             L+ +G+ DCFG  R ++L  L +  K     +K +++   ++F  +         ++  
Sbjct: 886  KLILSGSFDCFGQKRFEMLHILKDALKLTAQEKKVQSSGQIDMFETDIRKNRSIREIDDL 945

Query: 944  SVENSSVRFEN-EQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVAT--IRGNNIRLAA 999
            S +         E+  LGFY + HP   Y+  +      K   + ++    + +++ +  
Sbjct: 946  SRKRLKRMVFYGERDTLGFYLTNHPTSFYRSEISYYTRGKNIRDILSHSFSQESSLTVVG 1005

Query: 1000 MVVS---KQQKKT---RKGSRIGWVTFSEPAKEYEANFFP 1033
             + S    + K +   R    IG  T S+ +   E   FP
Sbjct: 1006 SISSCRLVKCKTSNFFRNSKTIGICTLSDFSGNLEIVLFP 1045


>gi|85708817|ref|ZP_01039883.1| DNA polymerase III alpha subunit [Erythrobacter sp. NAP1]
 gi|85690351|gb|EAQ30354.1| DNA polymerase III alpha subunit [Erythrobacter sp. NAP1]
          Length = 1165

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/1047 (43%), Positives = 633/1047 (60%), Gaps = 36/1047 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P FV L+V SSYS+LEGA+    I         PAI+I D N L+ A+ F+    +
Sbjct: 1    MPFAP-FVPLRVLSSYSMLEGAIDPKAIAKLAKERGFPAISICDRNGLYGAVMFANACKS 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+QPIIG  L +  + +                + LL     GY  L  LVS+ +L   
Sbjct: 60   EGVQPIIGTLLGVAREGSEGKLVDY---------LPLLAQDEAGYDNLCHLVSKAHLDRP 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +    + +  L E  T+GLI LTG   G + R         A   +    KLF +RLY+
Sbjct: 111  LELEPHVVMDDL-EGHTDGLIALTGAGEGALTRLLAEGQVDTATTFVERLDKLFVNRLYI 169

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L RH        E  ++++AY   LPLVATN + F     ++AHD ++ +A+ST +  +
Sbjct: 170  ELARHGDPVCERAEDALIEMAYNRALPLVATNPANFAEPHMHKAHDAMLCIANSTYIENE 229

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            DRPR     ++K+ + M  +F+DLPEA  NT+ IA+RC++            I       
Sbjct: 230  DRPRTNHAAFVKSSNMMEELFADLPEATANTLVIAQRCAYAPP-----YRDPILPSLAGD 284

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             + E   L  ++ AGLE RL+          + Y  RLD+E+++I  M F GYFLIVADF
Sbjct: 285  LEGEAKMLAEQSKAGLEERLSSYEDLSEEDRKVYFDRLDYEIDIIVGMGFPGYFLIVADF 344

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK   IPVGPGRGSGAGS+ A+ALTITD+DP++  LLFERFLNP+R+SMPDFDIDFC
Sbjct: 345  IQWAKDQGIPVGPGRGSGAGSIVAWALTITDLDPIQLGLLFERFLNPERVSMPDFDIDFC 404

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            + RR EVIRYVQ KYGH+ VAQIITFG ++A+A LRD GR LQM Y QVDRLCK++PN P
Sbjct: 405  ETRRGEVIRYVQKKYGHDHVAQIITFGKMKARAVLRDCGRILQMSYGQVDRLCKMVPNHP 464

Query: 484  AHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              P +  +A+   + F++    D  V RL++++ +LEGL R++STHAAG+VIGDRPL+QL
Sbjct: 465  TDPWTLPRALNGAADFKKEYDNDNEVKRLVDLALQLEGLPRNSSTHAAGVVIGDRPLAQL 524

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            VP+YRD RSD+PVTQ++MK +E +GL+KFDFLGLKTL++L+K++D LA RG+++DL  +P
Sbjct: 525  VPLYRDPRSDMPVTQYDMKNVESSGLVKFDFLGLKTLSVLRKAVDLLAMRGIEIDLGALP 584

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD   Y L+    T+G+FQLES GMR+ L+ ++P    DIIALVSLYRPGP+DNI ++ 
Sbjct: 585  LDDTAVYDLMQMGNTVGVFQLESEGMRRTLKAVKPSNFGDIIALVSLYRPGPMDNIPLFG 644

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G+  I   HP ++ +L ET G+ +YQEQVMQ AQ+L+GYSL +AD+LRRAMGKK++
Sbjct: 645  QRKAGEVAIEYPHPKLEGILAETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKVQ 704

Query: 723  EEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             EMD Q+ RF+ G    +GI    A  +F+L+ KFA YGFNKSHAAAYA+++YQTAWMK 
Sbjct: 705  AEMDIQRGRFVEGCKDVSGIEAKQANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWMKA 764

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQF--------NIQIMPPSVNTPCVDFKVG-- 831
            HYP EF AASM  ++   EK+  F  DAR++         ++++PP VN     F V   
Sbjct: 765  HYPEEFYAASMCFDLHQSEKLNIFVDDARRYPAERANGSGVEVLPPDVNHSEARFTVEQT 824

Query: 832  --DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                 + Y+LA I+ VG      I+ E  +  PF+SL+D   R+    +NRR LE L+ A
Sbjct: 825  DDGYAVRYALAGIRNVGEKAMEAIVAERRSKGPFESLKDLFERMPHGAMNRRQLEGLICA 884

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GALD    +R +L  + D +   A    + R++    +F  +     D + L+     + 
Sbjct: 885  GALDGLYPNRGELFANADLLLATADAAARERSSGQGGLFGGDNAPQED-LRLQPAESWSR 943

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRG-NNIRLAAMVVSKQ 1005
              +   E+   GFYFS HP+  Y+ +    G + Y+  +      G     +AAMV S  
Sbjct: 944  PDQMAKERENFGFYFSAHPVQQYREVASAQGARTYQSLMDGGAPAGRQTAVIAAMVESAG 1003

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +T++G+      FS+ + ++ A  F
Sbjct: 1004 KGRTKRGAEFVRGQFSDSSGQFSAACF 1030


>gi|294786036|ref|ZP_06751323.1| DNA polymerase III, alpha subunit [Fusobacterium sp. 3_1_27]
 gi|294486373|gb|EFG33736.1| DNA polymerase III, alpha subunit [Fusobacterium sp. 3_1_27]
          Length = 1133

 Score =  668 bits (1724), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1040 (36%), Positives = 587/1040 (56%), Gaps = 42/1040 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +E +  FVHL +H+ YSL EG  S++N L K       ++A+TD  N+F A+EF QKA  
Sbjct: 1    MENN--FVHLNLHTEYSLSEGVNSIDNFLIKAKELGMTSLAVTDYANMFCAVEFYQKAKK 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +L I  +D              + S+ LL     GY+ L++L S +Y  ++
Sbjct: 59   MGIKPIIGLELPISNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNE 107

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRL 182
              + +++    L+E  ++ LI L+   +G I +A   NSS     K +  + ++F  +  
Sbjct: 108  -NRELKLNKEILKE-HSQDLIALSSSMNGEIGKAILTNSSDEKISKIIDEYIEIFSKENF 165

Query: 183  YVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +Q +   +      +   LA  H L LVATNN  ++  + YE  D+++ +     V 
Sbjct: 166  YLEIQANELPETKIINDRFYDLAKLHNLELVATNNVYYVDRDGYELQDIIICIQSGLKVK 225

Query: 242  QKDRPRVTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +K+R R           + +  F      +A+ENT  IA  C+  +       P +    
Sbjct: 226  EKNRKRAISKELYLKSKDEMKRFLGEKFEKAIENTNHIADLCNVEISFGNLQFPYYEVPS 285

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                    +  L+      ++    +         +D   RL++EL+VI +M +SGYF++
Sbjct: 286  EYSGM---DEYLKTICHTNIKKLYKEDL------TKDILDRLEYELSVIIKMGYSGYFIV 336

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD D
Sbjct: 337  VWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDID 396

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+L KLI
Sbjct: 397  IDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLI 456

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                      + + ++    +    D  + ++++++ ++E   RH STHAAGI+I    L
Sbjct: 457  SPF---QTLEKTLKENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAGILITKEDL 513

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
             + VP+Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VDL
Sbjct: 514  DRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVDL 573

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD + + +L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LYRPGP+ + 
Sbjct: 574  YKIPLDDKKVFQMLSLGDSTGVFQLESTGIRKIMKRLKPDKFEDIVALLALYRPGPLQSG 633

Query: 659  V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +   + NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRA
Sbjct: 634  MVDDFINRKNGKEKIEYPHKDLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRA 693

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK    M + +E+FI  A KNG +   +  IFEL+ KFA YGFNKSH+ AYA+ISY T
Sbjct: 694  MGKKNFAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWT 753

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A+ K HYP  + AA MT E+     I  +  DA++  I++  P++N+P   F+V +  I 
Sbjct: 754  AYFKVHYPAFYYAAVMTSEISETGDIAYYFNDAKEHGIRVYSPNINSPSAYFEVKNEGIT 813

Query: 837  YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            YSLAAIK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +GALD   
Sbjct: 814  YSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIK 873

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R +   S+D +  Y+    K    +  N+F     T  D+  L          +   E
Sbjct: 874  GNRKEKFLSIDKVLDYSSKSSKTDEIQQMNLFGEAAKT-IDRFNLAISEDFTLDEKLNKE 932

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  LGFY S HPLD YK IL    IK   E         ++    + + ++  T+K  ++
Sbjct: 933  KEFLGFYLSSHPLDRYKDILITFSIKKLSEI-DLEEKQVVKTFGTITNLKKIITKKEEQM 991

Query: 1016 GWVTFS--EPAKEYEANFFP 1033
                    +         FP
Sbjct: 992  AMFNLICYDRT--ISCIAFP 1009


>gi|228993333|ref|ZP_04153249.1| DNA polymerase III subunit alpha [Bacillus pseudomycoides DSM 12442]
 gi|228766401|gb|EEM15044.1| DNA polymerase III subunit alpha [Bacillus pseudomycoides DSM 12442]
          Length = 1096

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1015 (35%), Positives = 574/1015 (56%), Gaps = 46/1015 (4%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +L+ A  ++ ++ +       ++AITD N ++  + F +     G++PIIG    +  ++
Sbjct: 1    MLKSACKIDELVSRAKELGFSSLAITDENVMYGVIPFYKACKKNGVRPIIGLTASVFSEE 60

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                             +VLL     GYQ L+++ S +    +      I   WL     
Sbjct: 61   E-----------EQSYPLVLLAENEIGYQNLLKISSTIMTKSKDG----IPKKWLSHY-A 104

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-SQV 200
            +GLI ++ G  G I++       ++AE+    ++ +FG   Y++LQ H   D      ++
Sbjct: 105  KGLIAISPGKDGEIEQLLLQGRDEIAEEVARAYQNMFG-SFYMSLQHHAIQDELFLQEKL 163

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
             Q A    +P+VATN+  ++++ D    + L++V   T ++  DRPR  T  +YLK+ +E
Sbjct: 164  PQFANEINIPVVATNDVRYVNQSDALVQECLLSVQSGTKMTDPDRPRLKTDQYYLKSSAE 223

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M ++FS   EAL+NTV IA RC   +  H   LP+F         +  +  LR     GL
Sbjct: 224  MEALFSHAEEALQNTVRIAERCHVEIPFHVNQLPKFPVP----SNETSDAYLRRICEDGL 279

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                       G     +R+RL+ EL VI+RM FS YFLIV DF+++  ++ I  GPGRG
Sbjct: 280  NK-------RYGAVQDVHRKRLNHELEVISRMGFSDYFLIVWDFMKYGHEHGILTGPGRG 332

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            S AGS+ +Y L ITDIDP+ ++LLFERFLNP+R+++PD DIDF   RRDE+IRYV++KYG
Sbjct: 333  SAAGSLVSYVLEITDIDPIEYNLLFERFLNPERVTLPDIDIDFPDIRRDEMIRYVKDKYG 392

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
              RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +      +    R
Sbjct: 393  QLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSRVGITLKEA-YEESGSLR 451

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
            E    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  +D+ VTQ+ 
Sbjct: 452  EFVQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGHNDVYVTQYP 510

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
             + +E+ GL+K DFLGL+ LTLL+  L   + + G ++D+  +P  D +T+ LL    T 
Sbjct: 511  AEVLEELGLLKMDFLGLRNLTLLENILTFIVNKTGKQIDIRNLPLQDEKTFQLLGRGDTT 570

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G+FQLES GMR  L  ++P+  EDI+A+ +LYRPGP++ I  +   K+GK +I  +H  +
Sbjct: 571  GVFQLESGGMRNVLRSLKPNEFEDIVAVNALYRPGPMEQIPTFIESKHGKRQIHYLHSDL 630

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
             P+LK T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK +E +D++++ F+ G  +
Sbjct: 631  KPILKSTYGVIVYQEQIMQIASQLAGFSLGEADLLRRAVSKKNREILDQERKHFVQGCLR 690

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +YP+EF+ A ++  + N
Sbjct: 691  NGYDETSAEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYPLEFMTALLSSAIGN 750

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
             +KI ++ ++ ++    ++PPS++    +F++  N I YSL +I+ +G  T   ++E   
Sbjct: 751  EDKIVQYIRETKRKGFHVLPPSLHRSSYNFQIEGNAIRYSLLSIRNIGMATVNAVIEERE 810

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
              PF  L +FC R+ +K +  R LE+ V+AG  D F  SR  L  S+    +YA      
Sbjct: 811  RNPFQDLFEFCLRMPAKFVTERNLEAFVWAGCFDDFQVSRTTLFNSIKGALEYA------ 864

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
                  ++          K    +    +   +  NE+  LGFY S +P   Y  +++++
Sbjct: 865  ------SLARELGEESVPKSVYVQGEELSFIEQLNNEKEALGFYLSSYPTAQYAKLVKEL 918

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             I    +++   R    R    V   +  +T+K  ++ +VTF +   E EA  FP
Sbjct: 919  EIPSLAQAMRQKRNVQ-RAIVYVTGVKVIRTKKLQKMAFVTFCDQNDEMEAVVFP 972


>gi|296327603|ref|ZP_06870148.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
            nucleatum subsp. nucleatum ATCC 23726]
 gi|296155277|gb|EFG96049.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
            nucleatum subsp. nucleatum ATCC 23726]
          Length = 1133

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1040 (36%), Positives = 591/1040 (56%), Gaps = 42/1040 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +E +  FVHL +H+ YSL EG  S+++ L K       ++A+TD  N+F A+EF QKA  
Sbjct: 1    MENN--FVHLNLHTEYSLSEGVNSIDSFLVKAKELGMTSLAVTDYANMFCAIEFYQKAKK 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +L I  +D              + S+ LL     GY+ L++L S +Y  ++
Sbjct: 59   MGIKPIIGLELPITNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNE 107

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRL 182
              + +++    L+E  ++ LI L+   +G I +A   NSS     K +  + ++F  +  
Sbjct: 108  -NRELKLNKEILKE-HSQDLIALSSSMNGEIGKAILTNSSDEKVNKIIDEYIEIFSKENF 165

Query: 183  YVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +Q +   +      +   LA  H+L LVATNN  ++  + YE HD+++ +     V 
Sbjct: 166  YLEIQANELSETKIINDKFYDLAKFHDLELVATNNVYYVDRDGYELHDIIICIQSGLKVK 225

Query: 242  QKDRPRVTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +K+R R           + +  F      +A+EN   IA  C+  +       P +    
Sbjct: 226  EKNRKRAISKELYLKSKDEMKRFLGEKFEKAIENANYIASLCNIEITFGNLQFPYYEVPS 285

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                    +  L+      ++    +         +D   RL++EL+VI +M +SGYF++
Sbjct: 286  EYSGM---DEYLKTICHTNIKKLYKEDL------TKDILDRLEYELSVIIKMGYSGYFIV 336

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD D
Sbjct: 337  VWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDID 396

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+L KLI
Sbjct: 397  IDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLI 456

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                      + + ++    +    D  + ++++++ ++E   RH STHAAGI+I    L
Sbjct: 457  SPF---QTLEKTLKENVEVAKLYTTDIELQKVIDLAIRIENTVRHVSTHAAGILITKEDL 513

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
             + VP+Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VDL
Sbjct: 514  DRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVDL 573

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD + + +L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LYRPGP+ + 
Sbjct: 574  YKIPLDDKKVFQMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPGPLQSG 633

Query: 659  V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +   + NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRA
Sbjct: 634  MVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRA 693

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK    M + +E+FI  A  NG ++  +  IFEL+ KFA YGFNKSH+ AYA+ISY T
Sbjct: 694  MGKKNFAIMRENREKFIERAVHNGYTEEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWT 753

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A+ K HYP  + AA MT E+     I  +  DA++  +++  P++N+P   F+V ++ I 
Sbjct: 754  AYFKVHYPAYYYAAVMTSEISETGDIAYYFNDAKEHEVRVYSPNINSPSAYFEVKNDGIT 813

Query: 837  YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            YSLAAIK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +GALD   
Sbjct: 814  YSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIK 873

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R +   S+D +  Y+    K    +  N+F     T  DK  L          +   E
Sbjct: 874  GNRKEKFLSIDKVLDYSSKAPKTDEIQQMNLFGEAAKT-IDKFNLAISEDFTLDEKLNKE 932

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  LGFY S HPLD YK IL    IK   E         I+    +++ ++  T+K  ++
Sbjct: 933  KEFLGFYLSSHPLDKYKDILTTFSIKKLSEF-DLEGNQVIKTFGTIINLKKIITKKEEQM 991

Query: 1016 GWVTFS--EPAKEYEANFFP 1033
                 S  +         FP
Sbjct: 992  AMFNLSCYDRT--LSCIAFP 1009


>gi|294782977|ref|ZP_06748303.1| DNA polymerase III, alpha subunit [Fusobacterium sp. 1_1_41FAA]
 gi|294481618|gb|EFG29393.1| DNA polymerase III, alpha subunit [Fusobacterium sp. 1_1_41FAA]
          Length = 1133

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1038 (36%), Positives = 594/1038 (57%), Gaps = 38/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +E +  FVHL +H+ YSLLEG  S+++ L +       ++A+TD  N+F A+EF +KA  
Sbjct: 1    MENN--FVHLNLHTEYSLLEGVNSIDSFLTRAKELGMNSLAVTDYANMFCAIEFYEKAKK 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +L +  ++              + ++ LL    EGY+ L++L S +Y   +
Sbjct: 59   MGIKPIIGLELPLYEKEE-----------QNIFTLTLLAKDYEGYKNLVKLASELY-KKK 106

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFKKLF-GDRL 182
              + +RI    L+E  ++GLI L+    G I +A   N  S+  +K +  + ++F  +  
Sbjct: 107  DNRELRISKEILKE-HSKGLIALSSSMKGEIGKAILMNFPSEKLDKIVDEYIEIFSKENF 165

Query: 183  YVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +Q +   +      +  ++A    + LVATNN  ++  + YE  D+++ +     + 
Sbjct: 166  YLEIQANELLETKVINDKFYEIAKLKNIELVATNNVHYVDRDGYELQDIVICIQSGWKLK 225

Query: 242  QKDRPRVTPDHYL--KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             K+R R                S+     +A+ENT  IA  C+  ++      P +    
Sbjct: 226  DKNRKRAVSKELYLKSKEEMQRSLDERFHKAIENTNYIASLCNLEIKFGNLQFPYYEVPN 285

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                    +  L++     ++    +         +D  +RL++EL+VI +M +SGYF++
Sbjct: 286  QYSGM---DEYLKSICYENIKKIYKENL------TKDILERLEYELSVIIKMGYSGYFIV 336

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI +AK+N IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD D
Sbjct: 337  VWDFIAYAKRNGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDID 396

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID C++RRDE+I YV +KYG ERVA IITFG ++A+AA+RD+GR L +   ++DRL KL+
Sbjct: 397  IDICRERRDELIDYVVHKYGRERVAHIITFGRMKARAAIRDIGRVLDIDLKKIDRLSKLV 456

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +        + + ++    +    D  + +++++S ++E   RH STHAAGI+I    L
Sbjct: 457  SSF---QTLEKTLKENVEVAKLYTTDIELQKVIDLSIRIENKIRHVSTHAAGILITKEDL 513

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
             + VP+Y D +  +  TQ+ MK +E  GL+K DFLGLK L+ +Q+++D++ + + + ++L
Sbjct: 514  DRTVPIYLDEKEGVIATQYQMKELEDLGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDIEL 573

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD + + +L+   + G+FQLES+G+R+ ++ ++P+ +EDI+AL++LYRPGP+ + 
Sbjct: 574  YKIPLDDKKVFEMLSQGDSTGVFQLESTGIRKIMKRLKPNKLEDIVALLALYRPGPLQSG 633

Query: 659  V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +   + NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRA
Sbjct: 634  MVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMANYSLGEADLLRRA 693

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK    M + +E+FI  A +N  ++  A  IFEL+ KFA YGFNKSH+ AYA+ISY T
Sbjct: 694  MGKKNFAIMRENREKFIQRAVENNYTEEKADEIFELIDKFAGYGFNKSHSVAYAMISYWT 753

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K +YP  + AA MT E+     I  +  DA++  I+I PP+VNTP   F++ ++ I 
Sbjct: 754  AYLKAYYPAFYFAAIMTSEISETGDIAYYFNDAKEHKIRIYPPNVNTPSAYFEIKNDGIS 813

Query: 837  YSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            YSLAAIK +G   A+ I+E    +  +  L++F  R     +N+R LE+L+ +GALD   
Sbjct: 814  YSLAAIKNLGLNLAKKIVEDYEKNGVYSKLDEFLIRNKKNGINKRALEALILSGALDELE 873

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R +   S+D +  Y     K    +  N+F     T + K TL      N   +   E
Sbjct: 874  GNRKEKFLSIDKVLDYVSKASKTDEIQQMNLFGEASKTIN-KFTLTSCEDFNLDEKLTKE 932

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  LGFY S HPLD YK I+    I    E         ++    +   ++  T+K  ++
Sbjct: 933  KEFLGFYLSSHPLDKYKDIITTFSINKLSEI-DAEESKVLKTFGTITGLKKIITKKEEQM 991

Query: 1016 GWVTFSEPAKEYEANFFP 1033
               +     +      FP
Sbjct: 992  ALFSILCYDRAISCIAFP 1009


>gi|93006042|ref|YP_580479.1| DNA polymerase III, alpha subunit [Psychrobacter cryohalolentis K5]
 gi|92393720|gb|ABE74995.1| DNA polymerase III, alpha subunit [Psychrobacter cryohalolentis K5]
          Length = 1247

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1066 (36%), Positives = 597/1066 (56%), Gaps = 72/1066 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +HS YS+ +  + +  ++   AAD Q A+A+TD +NL++ ++F +    AGI+P
Sbjct: 2    AFVHLGIHSEYSITDSIVRIKPLVKAAAADNQSALALTDLSNLYATVKFYRACLGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----G 125
            IIG ++ ++ +D                 + LL    EGYQ +  +VS  +   +     
Sbjct: 62   IIGSEVIMENED---------------TRLTLLAMNNEGYQNITRIVSLGFTEGRADPVN 106

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
              +  I  S +      G+I+L       + +A   +  + A++ L  ++  F DRLY  
Sbjct: 107  HGTPVIKRSHILA-HAAGVIVLF-TEKSDVGQALIGSMPEKADELLTEWQAQFADRLYFA 164

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            ++R +R  +       +     H +P++A N+  FL ++D++AH+  + +A S V++ ++
Sbjct: 165  IKRTNRTGEDAFIKAAIHSGAKHHIPIIAHNDVRFLEQDDFDAHEARVCIAGSYVLADQN 224

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP+  +   YLK +++M  +F+D+P+ ++NT+ +A RC+  L +   +LP F   E +  
Sbjct: 225  RPQTYSDAQYLKTQAQMEQLFADIPQVIDNTLRLATRCNVSLTLGINVLPEFPVPEGE-- 282

Query: 304  QKEEENELRNKAVAGLEVRLAQGAI------AKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                E+  R ++  GL+ RL +               Q Y  RL++EL VI  M F GYF
Sbjct: 283  --TTESFFRLESQRGLDNRLDKLFPVDARSDNWSDIRQRYDDRLEYELKVILSMGFPGYF 340

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DP+ + LLFERFLNP+R+SMPD
Sbjct: 341  LIVMDFIRWAKANGVPVGPGRGSGAGSLVAYALNITDLDPIHYDLLFERFLNPERVSMPD 400

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC + RD VI YV   YG E V+QIITFG++ AKA +RDV RA    Y    ++ K
Sbjct: 401  FDIDFCIEGRDRVIDYVAQTYGREAVSQIITFGTMAAKAVVRDVARAQSKSYFLASKMSK 460

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGI 532
            LIP  P   +S QA+  + + ++      ++D      + E++ KLEG+ R+   HA G+
Sbjct: 461  LIPKTPGITLS-QALEQEPQLKDLISNPDNMDYEDAIEVWEMAIKLEGICRNVGKHAGGV 519

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            +I    ++    +Y D      V+QF+   +E  GL+KFDFLGL+ LT++  ++  +  R
Sbjct: 520  LIAPHRITDFSAIYCDD-EGHRVSQFDKDDVEAVGLVKFDFLGLRNLTVIDAAVRNINLR 578

Query: 593  GVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
              K       L  +P DD + Y LL    T  +FQLES GM++ L  +QP  IED+IA+ 
Sbjct: 579  RAKEGKDALVLEDLPLDDAKAYKLLQDAKTTAVFQLESMGMKKYLAKLQPTNIEDVIAMC 638

Query: 648  SLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +LYRPGP+D  +V  Y +RK+G+E+++  HP ++P+L+ T GVI+YQEQVMQI+Q+++GY
Sbjct: 639  ALYRPGPLDAGMVEMYIDRKHGREEVIYDHPNLEPILENTNGVIVYQEQVMQISQVMAGY 698

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            SL  AD+LRRAMGKK  EEM KQ++ F++GA+  GI +  +  +F+L+ KFA YGFN+SH
Sbjct: 699  SLGGADMLRRAMGKKKPEEMAKQRDIFVTGATAQGIDEATSGGVFDLMEKFAGYGFNRSH 758

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTP 824
            +AAY V++YQTA++K +YP EF+AA +T +M+N + +  F  D R+  ++ ++ PSVN  
Sbjct: 759  SAAYGVLAYQTAYLKQYYPAEFMAAVLTSDMNNTDNVVFFINDCRENFDLTVVNPSVNRS 818

Query: 825  CVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVL 882
               F       I Y L AIKGVG      I+     + PF  L DFC RVD KK+N+R L
Sbjct: 819  EWHFVADTPTNIIYGLGAIKGVGEGAVESIVDARRREGPFKDLYDFCRRVDIKKVNKRTL 878

Query: 883  ESLVFAGALDCFGYS-------------RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            E+LV AG  D F  +             R  L+  L +  + A+   +NR     ++F  
Sbjct: 879  EALVSAGCFDDFAATLRPDLPADEAYEIRGALMSQLPSAVQAAEQDRQNREIGMMDLFGE 938

Query: 930  EKGTFSDKITLEKFSV--ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEES 986
              G  +    L            R + E+  LG Y +GHP+D Y+  L++       ++ 
Sbjct: 939  MDGVVA-APPLVMTPELIWGDKHRLKAEKNTLGLYLTGHPIDEYRDELKRYTSGARLDKL 997

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T    +   A +++      TR       +T  +     E + +
Sbjct: 998  TDTGYNGSCYFAGLIIDIANFGTRN-----VITLDDGTSRLEVSCY 1038


>gi|237745381|ref|ZP_04575862.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
 gi|229432610|gb|EEO42822.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
          Length = 1133

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/1040 (36%), Positives = 587/1040 (56%), Gaps = 42/1040 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +E +  FVHL +H+ YSL EG  S++N L +       ++A+TD  N+F A+EF QKA  
Sbjct: 1    MENN--FVHLNLHTEYSLSEGVNSIDNFLVRAKELGMNSLAVTDYANMFCAVEFYQKAKK 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +L I  +D              + S+ LL     GY+ L++L S +Y  ++
Sbjct: 59   MGIKPIIGLELPIFNKDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNE 107

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRL 182
              + +++    L+E  ++ LI L+   +G I +A   NSS       +  + ++F  +  
Sbjct: 108  -NRELKLNKEILKEY-SQDLIALSSSINGEIGKAILTNSSDEKINSIINEYIEIFSKENF 165

Query: 183  YVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +Q +   +      +   LA  + L LVATNN  ++  + YE  DV++ +     V 
Sbjct: 166  YLEIQANELSETKIINDKFYDLAKLNGLELVATNNVYYVDRDGYELQDVIICIQSGLKVK 225

Query: 242  QKDRPRVTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +K+R R           + +  F      +A+EN   IA  C+  +       P +    
Sbjct: 226  EKNRKRAISKELYLKSKDEMKRFLGEKFEKAIENANHIADLCNIEITFGNLQFPYYEVPS 285

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                    +  L+      ++    +         +D   RL++EL+VI +M +SGYF++
Sbjct: 286  EYSGM---DEYLKTICHTNIKKLYKENL------TKDILDRLEYELSVIIKMGYSGYFIV 336

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD D
Sbjct: 337  VWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDID 396

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+L KLI
Sbjct: 397  IDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLI 456

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                      + + ++    +    D  + ++++++ ++E   RH STHAAGI+I    L
Sbjct: 457  SPF---QTLEKTLKENVEVAKLYTTDIELQKVIDLAIRIENTVRHVSTHAAGILITKEDL 513

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
             + VP+Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VDL
Sbjct: 514  DRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVDL 573

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD + + +L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LYRPGP+ + 
Sbjct: 574  YKIPLDDKKVFQMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPGPLQSG 633

Query: 659  V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +   + NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRA
Sbjct: 634  MVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRA 693

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK    M + +E+FI  A KNG +   +  IFEL+ KFA YGFNKSH+ AYA+ISY T
Sbjct: 694  MGKKNFAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWT 753

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A+ K HYP  + AA MT E+     I  +  DA++  I++  P++N+P   F+V ++ I 
Sbjct: 754  AYFKVHYPAFYYAAVMTSEISETGDIAYYFNDAKEHGIRVYSPNINSPSAYFEVKNDGIT 813

Query: 837  YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            YSLAAIK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +GALD   
Sbjct: 814  YSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIK 873

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R +   S+D +  Y+    K    +  N+F     T  DK  L          +   E
Sbjct: 874  GNRKEKFLSIDKVLDYSSKAPKTDEIQQMNLFGEAAKT-IDKFNLAISEDFTLDEKLNKE 932

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  LGFY S HPLD YK I+    I    E        +++    + + ++  T+K  ++
Sbjct: 933  KEFLGFYLSSHPLDRYKDIILAFRINKLSEI-DLEGNQSVKTFGTITNLKKIITKKEEQM 991

Query: 1016 GWVTFS--EPAKEYEANFFP 1033
                 S  +         FP
Sbjct: 992  AMFNLSCYDRT--ISCIAFP 1009


>gi|330950665|gb|EGH50925.1| DNA polymerase III subunit alpha [Pseudomonas syringae Cit 7]
          Length = 939

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/957 (40%), Positives = 554/957 (57%), Gaps = 53/957 (5%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +    SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  
Sbjct: 1   MP--ASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQG 58

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +GI+PI G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q
Sbjct: 59  SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
               + I   W+ +  +EG+I L+    G I  A    +   A++ L  + ++F DR Y+
Sbjct: 109 RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYI 167

Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +QR +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +   
Sbjct: 168 EVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEAHETRVCIGEGRALDDP 227

Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R    +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   
Sbjct: 228 RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287

Query: 303 IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
           I    +   R  +  GLE R                 Q Y  RL+FEL++I +M F GYF
Sbjct: 288 I----DEYFRKVSFDGLEERLAVLLPKDTTEDYEARRQVYVDRLNFELDIIIQMGFPGYF 343

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           LIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 344 LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
           FD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K
Sbjct: 404 FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463

Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
           +IP +    +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI   
Sbjct: 464 MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPT 522

Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-----R 592
            L+   P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +      
Sbjct: 523 KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
              +D++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RP
Sbjct: 583 EEPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642

Query: 653 GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
           GP+ + +V +               +   +  + P+L  T G+I+YQEQVMQIAQ+++GY
Sbjct: 643 GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702

Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
           +L  AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH
Sbjct: 703 TLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNIFDLVEKFAGYGFNKSH 762

Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
           +AAY ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ R   +++  P VNT  
Sbjct: 763 SAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSE 822

Query: 826 VDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
             F V  D RI Y L AIKGVG      I +A  + PF  L DFC+RVD K++N+R L+ 
Sbjct: 823 FKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDG 882

Query: 885 LVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
           L+ +GALD  G                +R  LL +L+   + A+   ++R + H ++
Sbjct: 883 LIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDL 939


>gi|237740911|ref|ZP_04571392.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
 gi|229431208|gb|EEO41420.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
          Length = 1132

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/1034 (36%), Positives = 585/1034 (56%), Gaps = 40/1034 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ YSL EG  S++N L K       ++A+TD  N+F A+EF QKA   GI+PI
Sbjct: 4    FVHLNLHTEYSLSEGVNSIDNFLIKAKELGMTSLAVTDYANMFCAVEFYQKAKKMGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +L I  +D              + S+ LL     GY+ L++L S +Y  ++  + ++
Sbjct: 64   IGLELPISNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNE-NRELK 111

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRLYVNLQR 188
            I    L++  ++ LI+L+   +G I +A   NSS     K +  + ++F  +  Y+ +Q 
Sbjct: 112  INKEVLKKY-SQDLIVLSSSINGEIGKAILTNSSDEKISKIIDEYIEIFSKENFYLEIQA 170

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   +      +   LA  H L LVATNN  ++  + YE  D+++ +     V +K+R R
Sbjct: 171  NELPETKIINDRFYDLAKLHNLELVATNNVYYVDRDGYELQDIIICIQSGLKVKEKNRKR 230

Query: 248  VTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                       + +  F      +A+ENT  IA  C+  +       P +          
Sbjct: 231  AISKELYLKSKDEMKRFLGEKFEKAIENTNHIADLCNIEISFGNLQFPYYEVPSEYSGM- 289

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L+      ++    +         +D  +RL++EL+VI +M +SGYF++V DFI 
Sbjct: 290  --DEYLKTICHTNIKKLYKEDL------TKDILERLEYELSVIIKMGYSGYFIVVWDFIS 341

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD DID C++
Sbjct: 342  YAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDIDIDICRE 401

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+L KLI      
Sbjct: 402  RRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLISPF--- 458

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                + + ++    +    D  + ++++++ ++E   RH STHAAGI+I    L + VP+
Sbjct: 459  QTLEKTLKENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAGILITKEDLDRTVPI 518

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
            Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VDL  IP D
Sbjct: 519  YLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVDLYKIPLD 578

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662
            D + + +L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LYRPGP+ + +   + 
Sbjct: 579  DKKVFQMLSLGDSTGVFQLESTGIRKIMKRLKPDKFEDIVALLALYRPGPLQSGMVDDFI 638

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRAMGKK  
Sbjct: 639  NRKNGKEKIEYPHKDLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRAMGKKNF 698

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              M + +E+FI  A KNG +   +  IFEL+ KFA YGFNKSH+ AYA+ISY TA+ K H
Sbjct: 699  AIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWTAYFKVH 758

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP  + AA MT E+     I  +  DA++  I++  P++N+P   F+V +  I YSLAAI
Sbjct: 759  YPAFYYAAVMTSEISETGDIAYYFNDAKEHGIRVYSPNINSPSSYFEVKNEGITYSLAAI 818

Query: 843  KGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +GALD    +R + 
Sbjct: 819  KNFGLTMAKKIIEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIKGNRKEK 878

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
              S+D +  Y+    K    +  N+F     T  DK  L          +   E+  LGF
Sbjct: 879  FLSIDKVLDYSSKASKTDEIQQMNLFGEAAKT-IDKFNLAISEDFTLDEKLNKEKEFLGF 937

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y S HPLD YK I+    I    E         ++    + + ++  T+K  ++      
Sbjct: 938  YLSSHPLDRYKDIILAFRINKLSEI-DLEGSQIVKTFGTITNLKKIITKKEEQMAMFNLI 996

Query: 1022 --EPAKEYEANFFP 1033
              +         FP
Sbjct: 997  CYDRT--ISCIAFP 1008


>gi|256028238|ref|ZP_05442072.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
 gi|289766170|ref|ZP_06525548.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
 gi|289717725|gb|EFD81737.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
          Length = 1133

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1040 (36%), Positives = 587/1040 (56%), Gaps = 42/1040 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +E +  FVHL +H+ YSL EG  S++N L K       ++A+TD  N+F A+EF QKA  
Sbjct: 1    MENN--FVHLNLHTEYSLSEGVNSIDNFLIKAKELGMTSLAVTDYANMFCAVEFYQKAKK 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +L +  +D              + S+ LL     GY+ L++L S +Y  ++
Sbjct: 59   MGIKPIIGLELPVFNKDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNE 107

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRL 182
              + +++    L+E  ++ LI  +   +G I +A   NSS    +  +  + ++F  +  
Sbjct: 108  -NRELKLNKEILKEY-SQDLIAFSSSMNGEIGKAILTNSSDEKIDSIINEYIEIFSKENF 165

Query: 183  YVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +Q +   +      +   LA  + L LVATNN  ++  + YE  D+++ +     V 
Sbjct: 166  YLEIQANELLETKIINDKFYDLAKFYNLELVATNNVYYVDRDGYELQDIIICIQSGLKVK 225

Query: 242  QKDRPRVTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +K+R R           + +  F      +A+EN   IA  C+  +       P +    
Sbjct: 226  EKNRKRTISKELYLKSKDEMKRFLGEKFEKAIENANYIADLCNIEITFGNLQFPYYEVPS 285

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                    +  L+      ++    +         +D   RL++EL+VI +M +SGYF++
Sbjct: 286  EYSGM---DEYLKTICHTNIKKLYKEDL------TKDILDRLEYELSVIIKMGYSGYFIV 336

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD D
Sbjct: 337  VWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDID 396

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+L KLI
Sbjct: 397  IDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLI 456

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                      + + ++    +    D  + ++++++ ++E   RH STHAAGI+I    L
Sbjct: 457  SPF---QTLEKTLKENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAGILITKEDL 513

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
             + VP+Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VDL
Sbjct: 514  DRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVDL 573

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD + + +L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LYRPGP+ + 
Sbjct: 574  YKIPLDDKKVFQMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPGPLQSG 633

Query: 659  V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +   + NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRA
Sbjct: 634  MVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRA 693

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK    M + +E+FI  A KNG +   +  IFEL+ KFA YGFNKSH+ AYA+ISY T
Sbjct: 694  MGKKNFAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWT 753

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A+ K HYP  + AA MT E+     I  +  DA++  +++  P++N+P   F+V +  I 
Sbjct: 754  AYFKVHYPAYYYAAVMTSEISETGDIAYYFNDAKEHGVRVYSPNINSPSAYFEVKNEGIT 813

Query: 837  YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            YSLAAIK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +GALD   
Sbjct: 814  YSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIK 873

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R +   S+D +  Y+    K    +  N+F     T  DK  L          +   E
Sbjct: 874  GNRKEKFLSIDKVLDYSSKAPKTDEIQQMNLFGEAAKT-IDKFNLAISEDFTLDEKLNKE 932

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  LGFY S HPLD YK +L    IK   E        +++    + + ++  T+K  ++
Sbjct: 933  KEFLGFYLSSHPLDRYKDVLTTFSIKKLSEF-DLEGNQSVKTFGTITNLKKIITKKEEQM 991

Query: 1016 GWVTFS--EPAKEYEANFFP 1033
                 S  +         FP
Sbjct: 992  AMFNLSCYDRT--ISCIAFP 1009


>gi|288575454|ref|ZP_06393727.1| DNA polymerase III, alpha subunit [Neisseria mucosa ATCC 25996]
 gi|288567673|gb|EFC89233.1| DNA polymerase III, alpha subunit [Neisseria mucosa ATCC 25996]
          Length = 1124

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1017 (38%), Positives = 569/1017 (55%), Gaps = 34/1017 (3%)

Query: 26   ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKM 85
             + +  ++ K      PA+ I+D  N F  ++F +   +AGI+P+    + I        
Sbjct: 1    MVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIKPVGAADVWI-------- 52

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRICLSWLQEIGTEGL 144
                          +L++    GY RL EL++  Y+  D+      +   WL+     GL
Sbjct: 53   --GNPNAPDKPFRAMLVIRNDAGYLRLSELLTTAYVGKDRNVHHAELNPEWLENGDNSGL 110

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH--RGYDRYRESQVVQ 202
            I L+G   G +       +   A    L +   F D  Y+ LQR   R       S  V+
Sbjct: 111  ICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFYLELQRLPERPEWEACVSGSVK 170

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMV 261
            LA    LP+VAT+ + F+S +D+ AH+  + +A   V++ K RPR  TP  +      M+
Sbjct: 171  LAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPSQFFIPPETML 230

Query: 262  SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
              F+DLPEALENTVEIA+RC+  + +    LP F   +        ++ L   +  GL+ 
Sbjct: 231  ERFADLPEALENTVEIAKRCNIHITLGKNFLPLFPTPDG----LSLDDYLVKLSNEGLQE 286

Query: 322  RLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
            R+ Q    +   A+   +Y++RLDFELN+I +MKF GYFLIV DFI WAK +  PVGPGR
Sbjct: 287  RMVQLYPDEAERAEKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPVGPGR 346

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPDFD+DFCQ  R  VI YV+ KY
Sbjct: 347  GSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQANRGRVIEYVREKY 406

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV-SLQAIADDSR 497
            G E V+QI+TFG++ +KA +RDVGR L++P++  D+L KLIP +   P+    A+  + +
Sbjct: 407  GAEAVSQIVTFGTMSSKAVIRDVGRVLELPFTLCDKLSKLIPLEANKPLGLDDAMKAEPQ 466

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
             +E   A    D L+ +++KLE L R    HA G++I    +S   P+Y+   S  PV+ 
Sbjct: 467  IQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESASPVSM 525

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKG 616
            ++   +E  GL+KFDFLGL+ LT+++ + + +       VD+  IP DD   Y +     
Sbjct: 526  YDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDIVDVGTIPLDDQLAYKIFRDAN 585

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            T  +FQ ES+GM++ L+       E++IA VSLYRPGP+DNI  +  R  G+ +   IHP
Sbjct: 586  TTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQ-EFQYIHP 644

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            L++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRRAMGKK  EEM K +E F  GA
Sbjct: 645  LLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIFAEGA 704

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
            +K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQTAW+K HYP EF+AA+M+ E+
Sbjct: 705  AKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAATMSSEL 764

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIME 855
            DN +++K F  D R   I+ +PP +N     F    N +I Y+L AIKG G      I+ 
Sbjct: 765  DNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMKIRYALGAIKGTGEAAVESIIA 824

Query: 856  ASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
            A      F  L DFC RV  + +NRR LE+L+  GA D    +R  LL ++D     A  
Sbjct: 825  ARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLANIDLAMNNAD- 883

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
             +K        +F   +      + L    + + S +   E+ V+GFY SGHP   Y   
Sbjct: 884  -QKAANANQGGLFDMMEDAIEP-VQLVDAPMWSESEKLAEEKTVIGFYLSGHPFGPYAQE 941

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +R++              +++RLA  V + +    ++G  I +V+  + + + E   
Sbjct: 942  VRQIAPTKLGRLKPQ---DSVRLAGFVTAVRTMMGKRGK-IAFVSLEDLSGQIEIMV 994


>gi|205374532|ref|ZP_03227328.1| DNA polymerase III DnaE [Bacillus coahuilensis m4-4]
          Length = 1115

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1029 (37%), Positives = 603/1029 (58%), Gaps = 45/1029 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQV S+YSLLE  +S+  ++ K  +D    +A+TD N ++  + F Q+   AGIQP
Sbjct: 2    SFVHLQVWSAYSLLESTISIEKLVQKAKSDGYTHLALTDKNVMYGVIPFYQECRKAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG   DI   D             T+  +VLL  T  GY+ L+++ S +    +G    
Sbjct: 62   IIGVTADILHDD------------DTIHPLVLLAETERGYRNLMKISSVIQTKPEG---- 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
             I   WL+    EGLI +T G  G I+      + + A+K + ++  +F     Y+++Q 
Sbjct: 106  AIPFKWLKGY-KEGLIAITPGEDGKIEDELTNGAVEAAKKTIYSYLSIFSSHNFYLSIQW 164

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-PR 247
                  + +S++ QL      P++ ++   +L++E+  A + L+A+     +S+ DR   
Sbjct: 165  QT---THIQSELKQLGKETSTPILCSHPVRYLTKEEAFAQECLLAIRDGKKLSEDDRTIL 221

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             + ++  K+ SEMV +FS     L+NTV +A+RC   + +   +LP++  KE        
Sbjct: 222  PSNEYDFKSPSEMVELFSTEWGCLQNTVSVAKRCHIEIPLQQSLLPKYPLKEG----TSP 277

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + L +    GL+ R+        YH   Y +RL +EL++I  M+F  YFLIV DF+++A
Sbjct: 278  IDALSSLCKKGLKERVP-------YHHHTYVERLQYELSIIENMQFEDYFLIVWDFMKYA 330

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++++I  GPGRGS AGS+ AY L ITD+DP+   LLFERFLNP+R+SMPD DIDF   RR
Sbjct: 331  REHDIVTGPGRGSAAGSLVAYVLHITDVDPIEHHLLFERFLNPERVSMPDIDIDFPDHRR 390

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEVI+YV++KYG   VAQI+TFG+   KAALRDV R+      +++RL +++P  P   +
Sbjct: 391  DEVIQYVKDKYGELHVAQIVTFGTYGVKAALRDVARSFGFNTKEMERLSRMVPTTPGTTL 450

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
             ++A  +  + +E         +L + +  LEGL RH STHAAG+VI +RPL  +VP+  
Sbjct: 451  -VKAYRESKQLQEFIKESDLHQKLYKTAVLLEGLPRHTSTHAAGVVISERPLVDIVPIQT 509

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606
               + + +TQ++M  +E+ GL+K DFLGL+ LT+L++ +  + +    +  L  I  +D 
Sbjct: 510  GS-NGIYLTQYSMTVLEEIGLLKMDFLGLRNLTILEQLVKTINRYSKEEFKLDQIDQNDS 568

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T+ LL+   T GIFQLES GMR+ L  ++P   EDI+A+ +LYRPGP++NI  Y  RK+
Sbjct: 569  KTFELLSKGDTSGIFQLESEGMRKVLLSLKPSGFEDIVAVNALYRPGPMENIPDYVERKH 628

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G++ I SIHP ID +L  T+GVI+YQEQ+MQIA +++G+SL EAD+LRRA+ KK  + + 
Sbjct: 629  GRKPIPSIHPDIDSILNVTKGVIVYQEQIMQIASVMAGFSLGEADLLRRAVSKKKADVLQ 688

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K++E F+ GA+  G    +A  +++L+ KFA+YGFN+SHA AY++ISYQ A++K H+P  
Sbjct: 689  KEREHFVQGATAKGYPVKLANEVYDLIVKFANYGFNRSHAVAYSMISYQLAYIKAHFPSY 748

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            FLAA +T  + N +K+  +  +AR+ NI +  PS+N     F    N I YSL AI+GVG
Sbjct: 749  FLAALLTSVIGNEDKVAAYIHEARKKNIDLFSPSINRSYYSFFATKNGITYSLGAIRGVG 808

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                + I+ A  +KPF+ L DFC RVDSK +NR+ +ESL++AGALD F   R  LL SLD
Sbjct: 809  VKAYQEILRARNEKPFEDLMDFCLRVDSKVVNRKTIESLIYAGALDEFKKDRAVLLASLD 868

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                ++  ++   ++    +F  E      +    +     + ++ + E+ VLG Y S H
Sbjct: 869  AALDHSDLLKPKGSD--FALFDEEDMLLL-RPKYVEIEPMPTDIKLQYEREVLGIYLSDH 925

Query: 967  PLDVYKPILRKMGIKGYEE--SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            PL  ++ + R++G     +         + +     +   +  +T+KG  + +V  ++  
Sbjct: 926  PLRQFEGLQRRIGALPLSDTPIGKKEHDHIV----YLSEVKPIRTKKGDVMAFVKLTDQT 981

Query: 1025 KEYEANFFP 1033
             E +   FP
Sbjct: 982  GEVDGVVFP 990


>gi|256846853|ref|ZP_05552308.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium sp.
            3_1_36A2]
 gi|256717819|gb|EEU31377.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium sp.
            3_1_36A2]
          Length = 1132

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/1034 (36%), Positives = 583/1034 (56%), Gaps = 40/1034 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ YSL EG  S+++ L K       ++A+TD  N+F A+EF QKA   GI+PI
Sbjct: 4    FVHLNLHTEYSLSEGVNSIDSFLVKAKELGMSSLAVTDYANMFCAVEFYQKAKKMGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +L I  +D              + ++ LL     GY+ L++L S +Y  ++  + ++
Sbjct: 64   IGLELPISNRDE-----------QNIFTLTLLAKNYNGYKNLVKLASELYKKNE-NRELK 111

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRLYVNLQR 188
            I    L++  ++ LI+L+   +G I +A   +SS     K +  + ++F  +  Y+ +Q 
Sbjct: 112  INKEVLKKY-SQDLIVLSSSINGEIGKAILTDSSDEKINKIIDEYIEMFSKENFYLEIQA 170

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            +   +      +   LA  + L LVATNN  ++ ++ YE  D+++ +     V +++R +
Sbjct: 171  NELPETKIINDKFYNLAKLNGLELVATNNVYYVDKDGYELQDIIICIQSGLKVKERNRKK 230

Query: 248  VTPDHYL--KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                             +     +A+EN   IA  C+  +       P +          
Sbjct: 231  AISKELYLKSKEEMQRFLGEKFEKAIENANHIADLCNVEISFGNLQFPYYEVPSEYSGM- 289

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L+      ++    +         +D   RL++EL+VI +M +SGYF++V DFI 
Sbjct: 290  --DEYLKTICHTNIKKLYKENL------TKDILDRLEYELSVIIKMGYSGYFIVVWDFIS 341

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD DID C++
Sbjct: 342  YAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDIDIDICRE 401

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+L KLI    A 
Sbjct: 402  RRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLISPFQAL 461

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              +   + ++    +    D  + ++++++ ++E   RH STHAAGI+I    L + VP+
Sbjct: 462  ERT---LKENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAGILITKEDLDRTVPI 518

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
            Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VDL  IP D
Sbjct: 519  YLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVDLYKIPLD 578

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662
            D + +H+L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LYRPGP+ + +   + 
Sbjct: 579  DKKVFHMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPGPLQSGMVDDFI 638

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRAMGKK  
Sbjct: 639  NRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRAMGKKNF 698

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              M + +E+FI  A  NG ++  +  IFEL+ KFA YGFNKSH+ AYA+ISY T + K H
Sbjct: 699  AIMRENREKFIERAINNGYTEEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWTGYFKVH 758

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP  + AA MT E+     I  +  D ++  I++  P+VN+P   F+V +  I YSLAAI
Sbjct: 759  YPAYYYAAVMTSEISETGDIAYYFNDTKEHGIRVYSPNVNSPSAYFEVKNEGITYSLAAI 818

Query: 843  KGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +GALD    +R + 
Sbjct: 819  KNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIKGNRKEK 878

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
              S+D +  Y+    K    +  N+F     T  DK  L          +   E+  LGF
Sbjct: 879  FLSIDKVLDYSSKASKTDEIQQMNLFGEAAKT-IDKFNLAISEDFTLDEKLNKEKEFLGF 937

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y S HPLD YK IL    IK   E         ++    + + ++  T+K  ++      
Sbjct: 938  YLSSHPLDRYKDILITFSIKKLSEI-DLEEKQVVKTFGTITNLKKIITKKEEQMAMFNLI 996

Query: 1022 --EPAKEYEANFFP 1033
              +         FP
Sbjct: 997  CYDRT--ISCIAFP 1008


>gi|254442121|ref|ZP_05055597.1| DNA polymerase III, alpha subunit subfamily, putative
            [Verrucomicrobiae bacterium DG1235]
 gi|198256429|gb|EDY80737.1| DNA polymerase III, alpha subunit subfamily, putative
            [Verrucomicrobiae bacterium DG1235]
          Length = 1259

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1109 (32%), Positives = 567/1109 (51%), Gaps = 98/1109 (8%)

Query: 5    LEKSP--SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            +       FVHL  H+ YSLL+G         +      PA+A+TD  NLF A++F +  
Sbjct: 1    MSNPAEGPFVHLHNHTHYSLLDGCAKPLRAAQRCLELGMPALAMTDHGNLFGAIDFYRSC 60

Query: 63   CAAGIQPIIGCQLD-IDMQDNLKMTNQGKTPFPTVPSIV-------------------LL 102
               GI+P+IGC+L  ++     +   + +     +  I                    ++
Sbjct: 61   KKVGIKPLIGCELYYVNDHKQSERPRRERKRTDDIGDIPEHYVPPKEDFPKYQIHHKGVI 120

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
                EGYQ L +LVS  ++ +      R  +  L +  ++GLI L+G  +G   +   + 
Sbjct: 121  AKNFEGYQNLCKLVSDAHI-NGVYYKPRADIETLAKY-SKGLIGLSGCINGVAAQYLIYG 178

Query: 163  SSQVAEKRLLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFL 220
              + A K   TF  +FG +  ++ +Q H     R     +++LA   +L ++  N+S ++
Sbjct: 179  DEENARKATATFVDIFGKENYFIEIQDHGMPVQRRIIPGLLKLAKEFDLKVICANDSHYV 238

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
             +ED   HD L+ +    ++  ++R +  + + YLK+R EM  IF ++PE+L+NTV +A 
Sbjct: 239  YKEDANPHDALLCIQTGKIIEDENRMKYPSQEFYLKSRQEMYEIFKEVPESLDNTVHVAE 298

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENE----------------------------- 310
                 +       P F        + +++                               
Sbjct: 299  MVDLEIPFDEDHYPVFECPPELGYKSDDDAFDRILDIYELEKTKVNKQNGDDTVCKLTAE 358

Query: 311  -----------LRNKAVAGLEVRLAQGAI----------AKGYHAQDYRQRLDFELNVIA 349
                       L +    GL+ R                 +   A+    ++DF+L +I 
Sbjct: 359  ERANHKKNGFVLLDLCKKGLKERYGVDYDDRASYVPKEGEREDFAEFVCDQMDFQLAIIT 418

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
               F  YFLIV DFI +A+   IPVGPGRGSGAG + AY L ITDIDPLRF LLFER LN
Sbjct: 419  GTGFVDYFLIVWDFINFARSQGIPVGPGRGSGAGCIIAYVLKITDIDPLRFGLLFERMLN 478

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
             +R+S PDFDIDFC  RRD V+ YV+ KYGH+ VA IITFG+  AK  +RD+ R   + +
Sbjct: 479  LERVSPPDFDIDFCMRRRDVVVNYVREKYGHDSVANIITFGTFGAKMIVRDLARVNNLQF 538

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            ++ D++ K+IP++    +   ++   S  R     +P   +++E  + +EG+ R+   HA
Sbjct: 539  AEADKIAKMIPDELNISLD-DSVEKSSDLRNEIAVNPVAKKIVEHGKVIEGMVRNTGKHA 597

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
             GI+IGD+P+  LVP+    +     TQ+     E  GL+K DFLGLKTLT++  + D +
Sbjct: 598  CGIIIGDQPIHNLVPVTL--QEGDLTTQYPKGPSEDLGLLKMDFLGLKTLTVISDAQDNI 655

Query: 590  A--QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
               +     D+  +  +D +TY LL    T+G+FQLES GM+   + +     E+IIAL+
Sbjct: 656  QATRNLPDFDIEKVTLEDPKTYDLLNAGNTVGVFQLESGGMQNLCKQIGLSVFEEIIALI 715

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +LYRPGP+  I  +   K   +KI   HPL++ ++ ET GV++YQEQVM+ A++++GY+L
Sbjct: 716  ALYRPGPMQFIPQFIEGKRDPKKIQIPHPLLEELVSETYGVLVYQEQVMESARIIAGYTL 775

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGAS-KNGISKTIAVNIFELLAKFADYGFNKSHA 766
              AD+LRRAMGKKI   M+ QK+ F+ GA   +GI +  A+NIF +L KFA YGFNKSH+
Sbjct: 776  GGADMLRRAMGKKIASVMEAQKQIFVDGAKATHGIKEKEALNIFAILEKFAQYGFNKSHS 835

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AAYA++SY+TA++K +YPVEF+AA ++ E+ N +K+  F  +A    I+++ P +N    
Sbjct: 836  AAYAMLSYRTAYLKANYPVEFMAALLSAELGNADKVSHFIDEANSMGIRVLSPDINKSKE 895

Query: 827  DFK--------VGDNR---IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874
             F         + D +   I + + A+KGVG + A+ I+    A+ P++ +++   RVD+
Sbjct: 896  MFTPVIDSEEDIADGKLGSIVFGMGAVKGVGDSAAKTIIAERDANGPYEGMDELLERVDT 955

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--EKG 932
            K +N+RVLE+L+  GA D  G  R  L   L+     A   ++++    E+ F    E+ 
Sbjct: 956  KSVNKRVLENLIKTGAFDFTGEPRGSLFHRLEGAMNQAAEAQRDKERGQESFFDMIVEEP 1015

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               D    +       +     E+ +LGFY SGHPLD YK I   +      +       
Sbjct: 1016 KEKDAPQWDLSKQFTKTEMLRYEKELLGFYVSGHPLDEYKGIAEALTNFDLSKVDQLGDK 1075

Query: 993  NNIRLAAMVVSKQQKKTRK-GSRIGWVTF 1020
               +   +     +K +RK      + + 
Sbjct: 1076 VEFQACGVAGGVVKKLSRKDNRPWAFFSL 1104


>gi|269836260|ref|YP_003318488.1| DNA polymerase III, alpha subunit [Sphaerobacter thermophilus DSM
            20745]
 gi|269785523|gb|ACZ37666.1| DNA polymerase III, alpha subunit [Sphaerobacter thermophilus DSM
            20745]
          Length = 1095

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/1055 (28%), Positives = 484/1055 (45%), Gaps = 64/1055 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   +V L +H++YS L+GA     I+ + +     A+AITD + L  A+EF+Q A A
Sbjct: 1    MGREHRYVELHLHTAYSFLDGASLPEEIIARASELGYRALAITDHDGLHGAMEFAQLARA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            A IQPI G +L +                     + LL  +  GY  L  L++  +    
Sbjct: 61   ADIQPITGAELTLADGS----------------HLTLLAESVTGYGNLCRLITAAH-HAG 103

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
              +  R+    L     EGLI+LTG   G + R         AE  L  + + FG + + 
Sbjct: 104  EDRVPRLDPDLLPR-HAEGLILLTGCRQGALARLVDAGDLAGAEGLLRRYVEWFGAENVV 162

Query: 184  VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            V LQ++  Y D  R   +V+LA    L   AT N  +   E +   DVL+A+   T +  
Sbjct: 163  VELQQNLVYGDTRRVRLLVELAERLGLRYAATGNVHYHRPERHRLQDVLVAIRERTTLDG 222

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
              R R     +    +E V++  D   A                +   +  R        
Sbjct: 223  AHRARRANAEFYLRAAEEVAVLFDRYPAALEATLEIAERCAGFDLTRDLAYR-FPDYPTA 281

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +  ++ L       L  R  +        A     RL  EL +IAR + +G+FL+  D
Sbjct: 282  PGETPDDLLARICREALAERYPEPERRAAAEA-----RLAEELRLIARHRLAGFFLLYRD 336

Query: 363  FIQWAKKN--------------NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
             +  A++               N+P G GRGS   S+  Y + ++ +DPL   L   RFL
Sbjct: 337  LLLLAQEVAAEVRGTDTPRAGGNLPPGRGRGSSVSSIVCYLIGLSHVDPLAHGLFLGRFL 396

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            N D  S+PD D+DF +D R+ +I  V   YG E  A +  F + + ++A+RD+G+AL +P
Sbjct: 397  NEDLRSVPDIDLDFPRDIRERLIERVYEVYGPEHAALVCAFSTYKLRSAVRDIGKALGLP 456

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
               +D++ KL     A  +  + +A    F   R A P +  L+E++++L G  RH + H
Sbjct: 457  QPDIDKIAKLSEARSAKDL-GEELARIPEFAARRDA-PPLRYLVELAEELAGFPRHVTQH 514

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
              G+++   PL +LVP+         + Q++    + A  IK DFL L  L+L+++ L+ 
Sbjct: 515  VGGMIVSSSPLVELVPIQPAAMPGRYLCQWDKDSCDDARFIKIDFLALGMLSLVEECLEL 574

Query: 589  LAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            + +     VDLS I F D   Y ++    T+G+FQ+ES    Q L   QP  +ED+I  V
Sbjct: 575  IVRSGKPPVDLSRIDFADPAVYDMICAGDTIGVFQIESRAQIQMLPRTQPRSLEDLIVQV 634

Query: 648  SLYRPGPI-------DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            ++ RPGPI                +N +  I   HP ++P+L+ET GVI+YQEQV+++A 
Sbjct: 635  AIVRPGPIVGKAVNPYVQNRQRRMRNPRAPIRYDHPSLEPVLEETLGVILYQEQVLEVAM 694

Query: 701  LLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            +L+G++  +A+ LRRAM  K+ +E M     +F  GA   G+   +A  +F  L  FA+Y
Sbjct: 695  VLAGFTAGQAEALRRAMSRKRSREAMLHFWRQFRDGALARGVRLEVAKEVFRKLLGFAEY 754

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GF KSH+AA+AV++YQ+AW++ +YP EF  A    +            DA++  ++I+PP
Sbjct: 755  GFPKSHSAAFAVLAYQSAWLRCYYPTEFTCALFNNQPMGFYPPHVIVNDAKRHGVRILPP 814

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
             VN       V  N +      ++G+G   A  I     A+ P+ SL DF  RV    L 
Sbjct: 815  DVNQSGARCTVEGNAVRIGFGYVQGIGEDAALLIEREREANGPYRSLADFVRRVP---LA 871

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            R  +E+L+  GA D FG  R + L  L        + +     K   +         D +
Sbjct: 872  REAVENLIVVGAFDGFGLGRREALWQLGLFIPARGFGKNGAAGKQLPL---ALPVEQDMV 928

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
             L   S      +   +   LG     HPL + +P L +  I    +      G  +R+A
Sbjct: 929  ELRPMSAW---EQMAADYDTLGLSPRYHPLGLLRPHLPE-AIVSTVDLAEIPDGTEVRVA 984

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +VV +Q+  T KG  I ++   +         +P
Sbjct: 985  GLVVCRQRPGTAKG--ITFLLLEDERGLVNVIIYP 1017


>gi|19704718|ref|NP_604280.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
            nucleatum ATCC 25586]
 gi|19715034|gb|AAL95579.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
            nucleatum ATCC 25586]
          Length = 1133

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1040 (36%), Positives = 591/1040 (56%), Gaps = 42/1040 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +E +  FVHL +H+ YSL EG  S+++ L K       ++A+TD  N+F A+EF QKA  
Sbjct: 1    MENN--FVHLNLHTEYSLSEGVNSIDSFLVKAKELGMTSLAVTDYANMFCAIEFYQKAKK 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +L I  +D              + S+ LL     GY+ L++L S +Y  ++
Sbjct: 59   MGIKPIIGLELPITNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNE 107

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRL 182
              + +++    L+E  ++ LI L+   +G I +A   NSS     K +  + ++F  +  
Sbjct: 108  -NRELKLNKEILKE-HSQDLIALSSSMNGEIGKAILTNSSDEKVNKIIDEYIEIFSKENF 165

Query: 183  YVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +Q +   +      +   LA  H+L LVATNN  ++  + YE  D+++ +     V 
Sbjct: 166  YLEIQANELSETKIINDKFYDLAKFHDLELVATNNVYYVDRDGYELQDIIICIQSGLKVK 225

Query: 242  QKDRPRVTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +K+R R           + +  F      +A+EN   IA  C+  +       P +    
Sbjct: 226  EKNRKRAISKELYLKSKDEMKRFLGEKFEKAIENANYIASLCNIEITFGNLQFPYYEVPS 285

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                    +  L+      ++    +         +D   RL++EL+VI +M +SGYF++
Sbjct: 286  EYSGM---DEYLKTICHTNIKKLYKEDL------TKDILDRLEYELSVIIKMGYSGYFIV 336

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD D
Sbjct: 337  VWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDID 396

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+L KL+
Sbjct: 397  IDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLV 456

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +        + + ++    +    D  + ++++++ ++E   RH STHAAGI+I    L
Sbjct: 457  SHS---QTLEKTLKENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAGILITKEDL 513

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
             + VP+Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + +DL
Sbjct: 514  DRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNVQRTIDYIKKYKNIDIDL 573

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD + + +L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LYRPGP+ + 
Sbjct: 574  YKIPLDDKKVFQMLSLGDSTGVFQLESTGIRKIMKRLKPDKFEDIVALLALYRPGPLQSG 633

Query: 659  V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +   + NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRA
Sbjct: 634  MVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRA 693

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK    M + +E+FI  A KNG +   +  IFEL+ KFA YGFNKSH+ AYA+ISY T
Sbjct: 694  MGKKNFAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWT 753

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A+ K HYP  + AA MT E+     I  +  DA++  I+I  P++N+P   F+V ++ I 
Sbjct: 754  AYFKVHYPAYYYAAVMTSEISETGDIAYYFNDAKEHGIRIYSPNINSPSAYFEVKNDGIT 813

Query: 837  YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            YSLAAIK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +GALD   
Sbjct: 814  YSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIK 873

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R +   S+D +  Y+    K    +  N+F     T  DK  L          +   E
Sbjct: 874  GNRKEKFLSIDKVLDYSSKAPKTDEIQQMNLFGEAAKT-IDKFNLAISEDFTLDEKLNKE 932

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  LGFY S HPLD YK IL    IK   E         I+    +++ ++  T+K  ++
Sbjct: 933  KEFLGFYLSSHPLDKYKDILTTFFIKKLSEF-DLEGNQVIKTFGTIINLKKIITKKEEQM 991

Query: 1016 GWVTFS--EPAKEYEANFFP 1033
                 S  +         FP
Sbjct: 992  AMFNLSCYDRT--LSCIAFP 1009


>gi|260495663|ref|ZP_05815787.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium sp.
            3_1_33]
 gi|260196846|gb|EEW94369.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium sp.
            3_1_33]
          Length = 1133

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1040 (36%), Positives = 587/1040 (56%), Gaps = 42/1040 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +E +  FVHL +H+ YSL EG  S++N L K       ++A+TD  N+F A+EF QKA  
Sbjct: 1    MENN--FVHLNLHTEYSLSEGVNSIDNFLIKAKELGMTSLAVTDYANMFCAVEFYQKAKK 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +L +  +D              + S+ LL     GY+ L++L S +Y  ++
Sbjct: 59   MGIKPIIGLELPVFNKDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNE 107

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRL 182
              + +++    L+E  ++ LI L+   +G I +A   NSS       +  + ++F  +  
Sbjct: 108  -NRELKLNKEILKEY-SQDLIALSSSINGEIGKAILTNSSDEKINSIINEYIEIFSKENF 165

Query: 183  YVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +Q +   +      ++  LA  + L LVATNN  ++  + YE  D+++ +     V 
Sbjct: 166  YLEIQANELTETKIINDKLYDLAEFYNLELVATNNVYYVDRDGYELQDIIICIQSGLKVK 225

Query: 242  QKDRPRVTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +K+R R           + +  F      +A+ENT  IA  C+  +       P +    
Sbjct: 226  EKNRKRAISKELYLKSKDEMKRFLGEKFEKAIENTNHIASLCNVEITFGNLQFPYYEVPS 285

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                    +  L+      ++    +         +D   RL++EL+VI +M +SGYF++
Sbjct: 286  EYSGM---DEYLKTICHTNIKKLYKEDL------TKDILDRLEYELSVIIKMGYSGYFIV 336

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD D
Sbjct: 337  VWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDID 396

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+L KLI
Sbjct: 397  IDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLI 456

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                      + + ++    +    D  + ++++++ ++E   RH STHAAGI+I    L
Sbjct: 457  SPF---QTLEKTLKENVEVAKLYTTDIELQKVIDLAIRIENTVRHVSTHAAGILITKEDL 513

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
             + VP+Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VDL
Sbjct: 514  DRTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVDL 573

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD + + +L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LYRPGP+ + 
Sbjct: 574  YKIPLDDKKVFQMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPGPLQSG 633

Query: 659  V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +   + NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRA
Sbjct: 634  MVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRA 693

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK    M + +E+FI  A KNG +   +  IFEL+ KFA YGFNKSH+ AYA+ISY T
Sbjct: 694  MGKKNFAIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWT 753

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A+ K HYP  + AA MT E+     I  +  DA++  +++  P++N+P   F+V ++ I 
Sbjct: 754  AYFKVHYPAFYYAAVMTSEISETGDIAYYFNDAKEHGVRVYSPNINSPSAYFEVKNDGIT 813

Query: 837  YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            YSLAAIK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +GALD   
Sbjct: 814  YSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIK 873

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R +   S+D +  Y+    K    +  N+F     T  DK  L          +   E
Sbjct: 874  GNRKEKFLSIDKVLDYSSKAPKTDEIQQMNLFGEAAKT-IDKFNLAISEDFTLDEKLNKE 932

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  LGFY S HPLD YK I+    I    E         ++    + + ++  T+K  ++
Sbjct: 933  KEFLGFYLSSHPLDRYKDIILAFKINKLSEI-DLEGNQGVKTFGTITNLKKIITKKEEQM 991

Query: 1016 GWVTFS--EPAKEYEANFFP 1033
                    +         FP
Sbjct: 992  AMFNLICYDRT--ISCIAFP 1009


>gi|229019828|ref|ZP_04176629.1| DNA polymerase III subunit alpha [Bacillus cereus AH1273]
 gi|229026053|ref|ZP_04182436.1| DNA polymerase III subunit alpha [Bacillus cereus AH1272]
 gi|228735269|gb|EEL85881.1| DNA polymerase III subunit alpha [Bacillus cereus AH1272]
 gi|228741435|gb|EEL91634.1| DNA polymerase III subunit alpha [Bacillus cereus AH1273]
          Length = 1095

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/1016 (35%), Positives = 573/1016 (56%), Gaps = 49/1016 (4%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +L+ A  ++ ++ +       ++AITD N ++  + F +     GIQPIIG    I  ++
Sbjct: 1    MLKSACKIDELVIRAKELGFSSLAITDENVMYGVIPFYKACKKNGIQPIIGLTASIFSEE 60

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                             +VLL     GYQ L+++ S +    +      I   WL     
Sbjct: 61   E-----------EKSYPLVLLAENEIGYQNLLKISSSIMTKSKEG----IPKKWLAHY-A 104

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-SQV 200
            +GLI ++ G  G I++    +    AE+   T++ +F    Y++LQ H   D      ++
Sbjct: 105  KGLIAISPGKDGEIEQLLLEDKESQAEEVAHTYQNMFS-NFYISLQHHAIQDELLLQEKL 163

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSE 259
             +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR+ T  +YLK+  E
Sbjct: 164  PEFINKVNVPVVATNDVRYINQSDALVHECLLSVEGGTKMTDPDRPRMKTDQYYLKSSDE 223

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M ++FS   EA++NT++IA RC   +  H   LP+F         +  +  LR     GL
Sbjct: 224  MEALFSHAEEAIQNTIKIAERCRVEIPFHVNQLPKFPVP----SNETNDTYLRRVCEEGL 279

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                       G   + + QRL+ EL+VI+ M FS YFLIV DF+++A +N+I  GPGRG
Sbjct: 280  RK-------RYGTPKEVHIQRLNHELDVISSMGFSDYFLIVWDFMKYAHENHILTGPGRG 332

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            S AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRDE+IRYV++KYG
Sbjct: 333  SAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRDEMIRYVKDKYG 392

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
              RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +      +    R
Sbjct: 393  QLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLKDA-YEESQSLR 451

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
            E    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  +D+ VTQ+ 
Sbjct: 452  EFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGHNDVYVTQYP 510

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
               +E+ GL+K DFLGL+ LTLL+  +   + + G  +D+  +P  D +T+ LL    T 
Sbjct: 511  ADALEELGLLKMDFLGLRNLTLLENIIKFIVKKTGKHIDIRNLPLQDEKTFQLLGRGDTT 570

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK +I  +HP +
Sbjct: 571  GVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKRRIEYLHPDL 630

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
             P+L+ T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D++++ F+ G  K
Sbjct: 631  KPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQERKHFVQGCLK 690

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NG  +T +  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ A ++  + N
Sbjct: 691  NGYDETASEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMTALLSSAIGN 750

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
             +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T   ++E   
Sbjct: 751  EDKIVQYIRETKRKGFHVLPPSLQRSGYNFQMEGNAIRYSLLSIRNIGMATVTALLEERE 810

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
             K F+ L +FC R+ SK +  R LE+ V++G  D FG SR  L +SL    +YA      
Sbjct: 811  GKMFEDLFEFCLRMPSKFVTERNLEAFVWSGCFDDFGVSRTNLWKSLKGALEYANLAR-- 868

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
                       + G    K    +        +   E+  LGFY S +P   Y  + +++
Sbjct: 869  -----------DLGDAVPKSKYVQGEELPFIEQLNKEKEALGFYLSSYPTAQYAKLGKEL 917

Query: 979  GIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             I    +  A      + R    + S +  +T+K  ++ ++TF +   E EA  FP
Sbjct: 918  EIPSLAQ--AMRHKKKVQRAIVYITSVRVIRTKKFQKMAFITFCDQNDEMEAVVFP 971


>gi|319760423|ref|YP_004124361.1| DNA polymerase III subunit alpha [Candidatus Blochmannia vafer str.
            BVAF]
 gi|318039137|gb|ADV33687.1| DNA polymerase III subunit alpha [Candidatus Blochmannia vafer str.
            BVAF]
          Length = 1169

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1050 (37%), Positives = 606/1050 (57%), Gaps = 42/1050 (4%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+F+HL   S YS+++    +N +L+K      PA+A+TD  NLF  ++F   +   GI+
Sbjct: 4    PNFIHLHTRSDYSMIDSIAKVNELLEKAKLFNMPALALTDFTNLFGLIKFHNYSYELGIK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G    I             +       I  LV  ++GYQ LI+L+S+ Y        
Sbjct: 64   PITGSDFCIQDSS---------SDNIDFHEITCLVINSQGYQNLIQLISKAYKYKSNTSF 114

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I +SWLQE   +GLI+L+GG +G I +    +     ++RL  +   F +R Y+ L R
Sbjct: 115  PVIKMSWLQEY-NKGLILLSGGRNGDIGQYLLKDKKNKIDERLSFYNNYFPNRYYIELIR 173

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRP 246
                Y+       ++L+    LP+VATN+  F++E+D+ AH++ +A+     V   +   
Sbjct: 174  TGREYEELYLQLAIELSKIKGLPVVATNDIRFINEKDFLAHEIRVAIHDGVVVDKIQQLN 233

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + +   ++KN  +M  +F D+PE+L NTVEIA+RC+ I+ +           +       
Sbjct: 234  KYSKQQFMKNAQDMCLLFKDVPESLTNTVEIAQRCNCIINL-----NGSFLPKFPTGSIS 288

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             EN L   A  GLE RL              + Y +RL  EL+VI +M F GYFLIV +F
Sbjct: 289  IENFLIKFAQKGLEKRLLHLFPDDKKRYINRKPYDERLSHELHVIIQMGFPGYFLIVMEF 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAK N IPVGPGRGSGA S+ AY LTIT++DP++F LLFERFLNP+R+SMPD DIDFC
Sbjct: 349  IQWAKNNKIPVGPGRGSGASSLVAYVLTITELDPIKFDLLFERFLNPERISMPDLDIDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + RD VI +V   YG   VAQIITFG++ AKA +RDVGRAL  PY+ ++ + KLIP+  
Sbjct: 409  MEHRDLVIDHVVKTYGSCAVAQIITFGTMAAKAVIRDVGRALGYPYTFINSIAKLIPSKI 468

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +S Q+ A DS+ +     +  + +L+++S +LEGL R+ S HA G+VI    ++   
Sbjct: 469  GITLS-QSYATDSQLKLMYDNNEEIKKLIDLSLQLEGLIRNVSKHAGGVVIAPSKITDFS 527

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-----L 598
            P+Y D     P+TQF+   IE+ GLIKFDFLGL+TLT++ +SL  +    +K       +
Sbjct: 528  PLYYDSDHTHPMTQFDKNDIERIGLIKFDFLGLRTLTVIDRSLKMINNLRLKSCLSIIDI 587

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + I  +D E++ +L T  T GIFQLES G++  ++ ++PDC ED+IAL++L+RPGP+ + 
Sbjct: 588  NQISLNDQESFDVLQTSKTTGIFQLESRGIKALIKRLKPDCFEDLIALIALFRPGPLQSG 647

Query: 659  VV--YNNRKNGKEKIVSI-----HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            +V  + NRK+G E I        H  + P+LK T G+I+YQEQVMQIAQ+L+GY+  +AD
Sbjct: 648  MVDNFINRKHGYEAIYYPDSQWEHKSLRPVLKSTYGIILYQEQVMQIAQVLAGYTPGKAD 707

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRA+GKK  E+M KQ+  FI GA +NGI K ++  IF+L+ KFA YGFNKSH+ AYA+
Sbjct: 708  ILRRAIGKKKPEDMAKQRSIFIDGAVRNGIDKILSKKIFDLMEKFAGYGFNKSHSVAYAL 767

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            +SYQT W+KTHYP EF+A+++  +MDN+ +      + ++  ++I PP +N     F V 
Sbjct: 768  LSYQTLWLKTHYPAEFMASTLNSDMDNLNRTINLLNECKRIGLKIHPPDINNSQYYFCVN 827

Query: 832  DNR-IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              + I Y + AIKG+G T+   I+++      F  L DFC R+++ K+N R++E L+F+G
Sbjct: 828  KKKEIVYGIGAIKGIGKTSIDEIVKSRNCHGEFKGLFDFCVRIENLKINFRMVEKLIFSG 887

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS----- 944
            A D F   R +LL +L +    A      + +K  ++F     T   +  +   S     
Sbjct: 888  AFDSFKTHRSKLLSTLKDTINNATQYINKKNSKQTDMFETYINTQVTEYNVLNMSCMTST 947

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRK--MGIKGYEESVATIRGNNIRLAAMVV 1002
              N+ +  E E+  +G Y + HP+D Y   + +  + I   ++         + +  ++ 
Sbjct: 948  KWNNQILLEKEKETVGLYLTNHPVDQYIDEIEQYILNINKIKDVFRKKNNEMVCIFGLLS 1007

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            S + K ++KG+ I +    +   + E   F
Sbjct: 1008 SVRIKLSKKGNYILFGILEDKDDQVEIVVF 1037


>gi|228999385|ref|ZP_04158964.1| DNA polymerase III subunit alpha [Bacillus mycoides Rock3-17]
 gi|228760330|gb|EEM09297.1| DNA polymerase III subunit alpha [Bacillus mycoides Rock3-17]
          Length = 1096

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1015 (35%), Positives = 574/1015 (56%), Gaps = 46/1015 (4%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +L+ A  ++ ++ +       +++ITD N ++  + F +     G++PIIG    +  ++
Sbjct: 1    MLKSACKIDELVSRAKELGFSSLSITDENVMYGVIPFYKACKKNGVRPIIGLTASVFSEE 60

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                             +VLL     GYQ L+++ S +    +      I   WL     
Sbjct: 61   E-----------EQSYPLVLLAENEMGYQNLLKISSTIMTKSKDG----IPKKWLSHY-A 104

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-SQV 200
            +GLI ++ G  G I++       ++AE+    ++ +FG   Y++LQ H   D      ++
Sbjct: 105  KGLIAISPGKDGEIEQLLLQGRDEIAEEVARAYQNMFG-SFYMSLQHHAIQDELFLQEKL 163

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
             Q A    +P+VATN+  ++++ D    + L++V   T ++  DRPR  T  +YLK+ +E
Sbjct: 164  PQFANEINIPVVATNDVRYVNQSDALVQECLLSVQSGTKMTDPDRPRLKTDQYYLKSSAE 223

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M ++FS   EAL+NTV IA RC   +  H   LP+F         +  +  LR     GL
Sbjct: 224  MEALFSHAEEALQNTVCIAERCHVEIPFHVNQLPKFPVP----SNETSDAYLRRICEDGL 279

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                       G     +R+RL+ EL VI+RM FS YFLIV DF+++  ++ I  GPGRG
Sbjct: 280  NK-------RYGAVQDVHRKRLNHELEVISRMGFSDYFLIVWDFMKYGHEHGILTGPGRG 332

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            S AGS+ +Y L ITDIDP+ ++LLFERFLNP+R+++PD DIDF   RRDE+IRYV++KYG
Sbjct: 333  SAAGSLVSYVLEITDIDPIEYNLLFERFLNPERVTLPDIDIDFPDIRRDEMIRYVKDKYG 392

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
              RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +      +    R
Sbjct: 393  QLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSRVGITLKEA-YEESGSLR 451

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
            E    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  +D+ VTQ+ 
Sbjct: 452  EFVQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGHNDVYVTQYP 510

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
             + +E+ GL+K DFLGL+ LTLL+  L   + + G ++D+  +P  D +T+ LL    T 
Sbjct: 511  AEVLEELGLLKMDFLGLRNLTLLENILTFIVNKTGKQIDIRNLPLQDEKTFQLLGRGDTT 570

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G+FQLES GMR  L  ++P+  EDI+A+ +LYRPGP++ I  +   K+GK +I  +H  +
Sbjct: 571  GVFQLESGGMRNVLRSLKPNEFEDIVAVNALYRPGPMEQIPTFIESKHGKCQIHYLHSDL 630

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
             P+LK T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK +E +D++++ F+ G  +
Sbjct: 631  KPILKSTYGVIVYQEQIMQIASQLAGFSLGEADLLRRAVSKKNREILDQERKHFVQGCLR 690

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +YP+EF+ A ++  + N
Sbjct: 691  NGYDETSAEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYPLEFMTALLSSAIGN 750

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
             +KI ++ ++ ++    ++PPS++    +F++  N I YSL +I+ +G  T   ++E   
Sbjct: 751  EDKIVQYIRETKRKGFHVLPPSLHRSSYNFQIEGNAIRYSLLSIRNIGMATVNAVIEERE 810

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
              PF  L +FC R+ +K +  R LE+ V+AG  D F  SR  L  S+    +YA      
Sbjct: 811  RNPFQDLFEFCLRMPAKFVTERNLEAFVWAGCFDDFQVSRTTLFNSIKGALEYA------ 864

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
                  ++          K    +    +   +  NE+  LGFY S +P   Y  +++++
Sbjct: 865  ------SLARELGEESVPKSVYVQGEELSFIEQLNNEKEALGFYLSSYPTAQYAKLVKEL 918

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             I    +++   R    R    V   +  +T+K  ++ +VTF +   E EA  FP
Sbjct: 919  EIPSLAQAMRQKRNVQ-RAIVYVTGVKVIRTKKLQKMAFVTFCDQNDEMEAVVFP 972


>gi|134302515|ref|YP_001122485.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis WY96-3418]
 gi|134050292|gb|ABO47363.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis WY96-3418]
          Length = 1159

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1043 (37%), Positives = 586/1043 (56%), Gaps = 45/1043 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131
             +L +D +  +               +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64   VELKVDTEFGI-------------CDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR 190
              SWL E+  E +I L GG  G + +A        A++ +    ++FG +   + + +  
Sbjct: 111  PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYIIEIHKLE 170

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248
               +     + ++ A  + L  VATN ++F+  +DY+ H++   +   T +  + R  + 
Sbjct: 171  YENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSKF 230

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP             E+
Sbjct: 231  TKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVNIPAG----LTEK 286

Query: 309  NELRNKAVAGLEVRLAQG-----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                     GL+ RL +      A    +  + Y+ RL  E+++I  M F GYFLIV DF
Sbjct: 287  EYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVEDF 346

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDFC
Sbjct: 347  IRWSKENDIPVGPGRGSGAGSMVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDFC 406

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
               RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  P
Sbjct: 407  IQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETP 466

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                       +    E   AD  V  ++E +QKLEGL R    HAAGIVI    +S   
Sbjct: 467  GTTFKKILHEGEP-LYEEVQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDFA 525

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD----LS 599
            P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  +  +         ++
Sbjct: 526  PVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDIA 585

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI 
Sbjct: 586  DIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENIP 645

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             + +RK+G+++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMGK
Sbjct: 646  TFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGK 705

Query: 720  KIKEEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K  EEM+KQ++ F    A  + I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTAW
Sbjct: 706  KKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAW 765

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYY 837
            +K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   V    I  
Sbjct: 766  LKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTILL 825

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L AIKG+G    + I+        F S+ D C RVD +K+N++ LE+L +AGA+     
Sbjct: 826  GLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDISK 885

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRFE 953
            +R     S++   K A +V +      +++F   +        LE+       N      
Sbjct: 886  NRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELLI 945

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAA-MVVSKQQKK 1008
            NE++ LG YFSGH +D  +   R      + +        + GN++R+ A M+    ++K
Sbjct: 946  NEKKALGMYFSGHIIDE-ESHWRNH--VSFSDLEKIQQPNMDGNSVRIIASMITPPARRK 1002

Query: 1009 TRKGSRIGWVTFSEPAKEYEANF 1031
            T+ G  +  +   +     +   
Sbjct: 1003 TKTGRVLYIINIDDEFDRADCLI 1025


>gi|118602780|ref|YP_903995.1| DNA polymerase III, alpha subunit [Candidatus Ruthia magnifica str.
            Cm (Calyptogena magnifica)]
 gi|118567719|gb|ABL02524.1| DNA polymerase III, alpha subunit [Candidatus Ruthia magnifica str.
            Cm (Calyptogena magnifica)]
          Length = 1144

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1041 (37%), Positives = 606/1041 (58%), Gaps = 35/1041 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S +FVHL   S +S+    + +  +++K+      +IA+TD +NLF+A++F QKA  
Sbjct: 1    MTNS-NFVHLHCQSEFSVENSLIRIPKLIEKVQEIGMNSIALTDESNLFTAVKFYQKATI 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            A I+PI G +++I  ++                S++LL    +GY  L EL+S  Y   +
Sbjct: 60   ANIKPIFGARINIKDKEG------------EFYSVLLLCQDYQGYLNLSELISLSYTQGR 107

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              + V +    L +   +GLIM+       + +    N    A+++   ++ +  +R Y+
Sbjct: 108  SFECVSVTQQQLID-HNQGLIMIATPIYSDVAKYLISNQMIEAKQKAEFWQTILVERYYL 166

Query: 185  NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            ++QR  R +D       V+LA   ++ +VATN+  FL+E D++AH+  + ++   ++   
Sbjct: 167  SVQRTSREFDEEHLHLCVKLALELDIAVVATNDVQFLNESDFDAHEARICISQGGLLDDV 226

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R +  +   +LK+  +M  +FSDLPE LENT+EIA+RC+   ++               
Sbjct: 227  RREKHFSNQQFLKSSEQMHELFSDLPEILENTLEIAKRCNVHFKLFKKNYLP---DFPVP 283

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                 E     ++  GL  RL    +        Y QRL FELNVI +M F GYFLIVAD
Sbjct: 284  KDLTIERFFCEESEHGLVQRLQNLKVDTLV----YYQRLKFELNVIIQMGFPGYFLIVAD 339

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+K+N+IPVGPGRGSGAGS+ AY L IT++DP+R  LLFERFLNP+R+SMPDFDIDF
Sbjct: 340  FIRWSKENDIPVGPGRGSGAGSLVAYVLGITNVDPIRHELLFERFLNPERVSMPDFDIDF 399

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C DRRDEVI YV  KYG+++V+QIIT+G++ AK  +RDVGR L  PY   D++ K+IPND
Sbjct: 400  CTDRRDEVIDYVAKKYGYKKVSQIITYGTMAAKGVVRDVGRILGHPYGFSDKISKMIPND 459

Query: 483  PAHPV----SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                +    S          R    ++ SV  L+++S++LEGL R+  THA G+VI    
Sbjct: 460  LKMTLEKALSKPEEGGSEELRARYDSEESVTALIDLSKQLEGLVRNVGTHAGGVVIAPSK 519

Query: 539  LSQLVPMYRD-VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GV 594
            +S   P+Y+    +D  V+QF+   IE  GL+KFDFLGL  LT++ K++  ++ +     
Sbjct: 520  ISDFCPVYKGYGENDGVVSQFDKDDIEAIGLVKFDFLGLSNLTVIHKTVKLISAKGLSNE 579

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +DL  +P DD + Y LL    T GIFQLES GMR  L+ +Q D  EDI+A+++LYRPGP
Sbjct: 580  PIDLDALPLDDKKVYELLQRCDTTGIFQLESEGMRSYLKKLQADNFEDIVAMLALYRPGP 639

Query: 655  IDNIVVYNNRKNGK-EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            +D  +V +        ++   HP+++ +LK T GV +YQEQVM+ AQ+++GYSL  AD+L
Sbjct: 640  LDAGMVDDYINVKHGAQVKYPHPMLEQILKPTNGVFLYQEQVMKSAQVMAGYSLGGADLL 699

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAMGKK   EM +Q+  F+ GA++ GI +  A  IF+L+ KF+ YGFNKSH+ AYA +S
Sbjct: 700  RRAMGKKKDSEMSRQRSVFVKGAAEKGIDEKKANEIFDLIDKFSGYGFNKSHSVAYAYVS 759

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            Y TAW+K+H+P  F+AA ++  MDN ++I     + R+  + +  P+V     +F + D 
Sbjct: 760  YHTAWLKSHHPAPFMAAVLSGMMDNTDRISFTISEVRKMGLVVNGPNVCESNYEFSINDE 819

Query: 834  R-IYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + + Y L AIKGVG      ++ E + +  + SL +FCSR++ + LN+R +E+L+++GA 
Sbjct: 820  KTVAYGLGAIKGVGGALVDALVFERNTNGVYKSLFEFCSRIEKRYLNKRAIEALIYSGAF 879

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D  G  R  L+++     + A+  + +  +  + +F++ +     ++     S  +   R
Sbjct: 880  DVLGVDRASLIKTYPIAIRQAEQKQNDYFSGQKGLFSNIEQHNEYEMNYLSASSFSFKER 939

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
             + E+ VLG+YF+ HP D YK  L+ +G     + V      ++R+ A++   + + T+ 
Sbjct: 940  LQLEKSVLGYYFNDHPTDEYKTDLKHIGAILPSKIV-FRNNKDMRILALISELRYRATKS 998

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G +I  +T  + AK   A  F
Sbjct: 999  GGQIALITVEDGAKLLNAVIF 1019


>gi|224373354|ref|YP_002607726.1| DNA polymerase III subunit alpha [Nautilia profundicola AmH]
 gi|223588342|gb|ACM92078.1| DNA polymerase III alpha subunit [Nautilia profundicola AmH]
          Length = 1132

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/1045 (35%), Positives = 585/1045 (55%), Gaps = 50/1045 (4%)

Query: 15   QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             +HS YSLL   + + ++  K       A+AIT+ +N+FSA+EF +   A  I+PIIG  
Sbjct: 5    HIHSDYSLLHSTIRIKDLTKKAKEYGFNALAITELDNMFSAIEFYESCRANEIKPIIGSD 64

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            + +                  +  ++L+     GY  L+ L S  YL +       +   
Sbjct: 65   VSV-------------IRDGNIHRLILIAKNKTGYDNLMYLSSISYLYNMRGDKPYLPFE 111

Query: 135  WLQEIGTEGLIMLTGGSSGPID--------RAFFFN--SSQVAEKRLLTFKKLFGDRLYV 184
             + +   EGL  +                           + A++ L  +++   + +Y+
Sbjct: 112  EIVK-NKEGLCFILPILESETGFHLNIFNENNILKGAAGYEKAKEILEIYRQNLNE-VYL 169

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             + R    +R  E  +++L+     PL+A++N  FL++ DY   D L  + ++       
Sbjct: 170  EITRDSKEERLIEDDLIKLSNETGTPLLASSNIFFLNKLDYIYKDALECIENNKQFDDLH 229

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R     ++Y +++ E   IF DLPEA+ENT ++A   +  + +  P  P F   +    +
Sbjct: 230  RRPKVKENYFRSKEEFEEIFKDLPEAVENTDKLAESINLEIPLGNPTPPTFKFTKDYAAE 289

Query: 305  KEEE-----NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
            +  +          K   GLE RL           ++YR+RLD+E+++I RMKF GY LI
Sbjct: 290  EGLDIDNDVEYFEYKCKEGLEERLKHIPEN---LHEEYRKRLDYEIDIIKRMKFPGYMLI 346

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DF++ AKK  IPVGPGRGS AG++ AY+L IT+IDPLR+ LLFERFLNP+R+SMPD D
Sbjct: 347  VWDFVREAKKRKIPVGPGRGSAAGALVAYSLQITNIDPLRYGLLFERFLNPERVSMPDID 406

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DFCQ+RR E+I YV+ KYG   VAQ+ITFGSL AK  LRDV R   + YS+ DR  KLI
Sbjct: 407  MDFCQERRGEIIEYVREKYGKVNVAQVITFGSLLAKGVLRDVARIFGIDYSEADRFVKLI 466

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            P+     +       + +  E    DP  +RL    + LEGL R+   HAAG+VI D  L
Sbjct: 467  PDQLGITLEKAK-ELEPKIVEITEEDPLYNRLYSFGEHLEGLKRNTGMHAAGVVISDEEL 525

Query: 540  SQLVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVD 597
             +  P+YR D   D  VTQ+++ ++E   LIKFDFLGLKTLT++ +++  +   +   ++
Sbjct: 526  WKKSPLYRQDEHDDTIVTQYSLNYLEPVDLIKFDFLGLKTLTVIDRAVKNVKFNKNEDIN 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            + L+  DD + + L+ +  TLG+FQ+ES GM+   + ++P   EDIIA+++LYRPGP+D+
Sbjct: 586  IDLLTLDDPKVFELIQSGHTLGLFQIESDGMQDLAKRLKPTNFEDIIAMLALYRPGPMDS 645

Query: 658  IV--VYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
             +   Y +RK+G++ +          + P+L+ T GVI+YQEQVMQI Q + G+SL E+D
Sbjct: 646  GMLDDYIDRKHGRKPVSYFFDEFEEVLKPILEPTYGVIVYQEQVMQIVQAIGGFSLGESD 705

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            ++RRAMGKK  + M K  E F   A + G S   A ++FEL+ KFA YGFNKSH+AAYA+
Sbjct: 706  IIRRAMGKKKFDLMKKYAEEFAQRAQQRGFSYDNAKSLFELIEKFAGYGFNKSHSAAYAM 765

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            I+YQTA++KT+YP EFL+A +T E +N +KI K+ ++A+   I+++PP+VN    +F   
Sbjct: 766  ITYQTAYLKTYYPTEFLSALLTYEAENTDKIAKYIEEAKVLGIEVLPPNVNKSNAEFTPI 825

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            +++I + L+AIKGVG+     I+   A++P++SLEDF  +VD+ K+N++VLE L+ AGA+
Sbjct: 826  EDKILFGLSAIKGVGSKAIESIV---ANRPYESLEDFILKVDTSKVNKKVLEQLIKAGAM 882

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWV--EKNRTNKHENIFAHEKGTFSDKITL--EKFSVEN 947
            D FG SR  +L  ++ I ++ + V  +KN  N   ++FA  +        L        +
Sbjct: 883  DDFGLSRKAMLSRVEEILEFKKRVEEKKNAINHEHSLFADMEENEEIDEHLDIPNTVEFD 942

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
                 E E + LGFY S HPLD YK  ++ +      E    I          + + + +
Sbjct: 943  IKTLLEYEYQTLGFYVSAHPLDPYKDRMKGINYNLSSEVEEIIS-QEALFVGKIDAMKVR 1001

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++KG++    T  +   + +   F
Sbjct: 1002 ISKKGNKFAIATLMDFHGKIDVMIF 1026


>gi|254373926|ref|ZP_04989408.1| DNA-directed DNA polymerase [Francisella novicida GA99-3548]
 gi|151571646|gb|EDN37300.1| DNA-directed DNA polymerase [Francisella novicida GA99-3548]
          Length = 1159

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1043 (37%), Positives = 586/1043 (56%), Gaps = 45/1043 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131
             +L +D +  +               +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64   VELKVDTEFGI-------------CDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR 190
              SWL E+  E +I L GG  G + +A        A++ +    ++FG +   + + +  
Sbjct: 111  PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIINQNIEIFGTNNYIIEIHKLE 170

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248
               +     + ++ A  + L  VATN ++F+  +DY+ H++   +   T +  + R  + 
Sbjct: 171  YENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSKF 230

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP             E+
Sbjct: 231  TKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVNIPAG----LTEK 286

Query: 309  NELRNKAVAGLEVRLAQG-----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                     GL+ RL +      A    +  + Y+ RL  E+++I  M F GYFLIV DF
Sbjct: 287  EYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVEDF 346

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDFC
Sbjct: 347  IRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDFC 406

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
               RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  P
Sbjct: 407  IQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETP 466

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                       +    E   AD  V  ++E +QKLEGL R    HAAGIVI    +S   
Sbjct: 467  GTTFKKILHEGEP-LYEEMQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDFA 525

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD----LS 599
            P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  +  +         ++
Sbjct: 526  PVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDIA 585

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI 
Sbjct: 586  DIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENIP 645

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             + +RK+G+++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMGK
Sbjct: 646  TFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGK 705

Query: 720  KIKEEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K  EEM+KQ++ F    A  + I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTAW
Sbjct: 706  KKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAW 765

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYY 837
            +K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   V    I  
Sbjct: 766  LKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTILL 825

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L AIKG+G    + I+        F S+ D C RVD +K+N++ LE+L +AGA+     
Sbjct: 826  GLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDISK 885

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRFE 953
            +R     S++   K A +V +      +++F   +        LE+       N      
Sbjct: 886  NRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELLI 945

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAA-MVVSKQQKK 1008
            NE++ LG YFSGH +D  +   R      + +        + GN++R+ A M+    ++K
Sbjct: 946  NEKKALGMYFSGHIIDE-ESHWRNH--VSFSDLEKIQQPNMDGNSVRIIASMITPPARRK 1002

Query: 1009 TRKGSRIGWVTFSEPAKEYEANF 1031
            T+ G  +  +   +     +   
Sbjct: 1003 TKTGRVLYIINIDDEFDRADCLI 1025


>gi|118497099|ref|YP_898149.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            novicida U112]
 gi|194323396|ref|ZP_03057173.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            novicida FTE]
 gi|208778892|ref|ZP_03246238.1| DNA polymerase III alpha subunit [Francisella novicida FTG]
 gi|118423005|gb|ABK89395.1| DNA polymerase III, alpha subunit [Francisella novicida U112]
 gi|194322251|gb|EDX19732.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            novicida FTE]
 gi|208744692|gb|EDZ90990.1| DNA polymerase III alpha subunit [Francisella novicida FTG]
          Length = 1159

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1043 (37%), Positives = 586/1043 (56%), Gaps = 45/1043 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131
             +L +D +  +               +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64   VELKVDTEFGI-------------CDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR 190
              SWL E+  E +I L GG  G + +A        A++ +    ++FG +   + + +  
Sbjct: 111  PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIINQNIEIFGTNNYIIEIHKLE 170

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248
               +     + ++ A  + L  VATN ++F+  +DY+ H++   +   T +  + R  + 
Sbjct: 171  YENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSKF 230

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP             E+
Sbjct: 231  TKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVDIPAG----LTEK 286

Query: 309  NELRNKAVAGLEVRLAQG-----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                     GL+ RL +      A    +  + Y+ RL  E+++I  M F GYFLIV DF
Sbjct: 287  EYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVEDF 346

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDFC
Sbjct: 347  IRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDFC 406

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
               RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  P
Sbjct: 407  IQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETP 466

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                       +    E   AD  V  ++E +QKLEGL R    HAAGIVI    +S   
Sbjct: 467  GTTFKKILHEGEP-LYEEMQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDFA 525

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD----LS 599
            P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  +  +         ++
Sbjct: 526  PVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDIA 585

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI 
Sbjct: 586  DIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENIP 645

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             + +RK+G+++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMGK
Sbjct: 646  TFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGK 705

Query: 720  KIKEEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K  EEM+KQ++ F    A  + I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTAW
Sbjct: 706  KKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAW 765

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYY 837
            +K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   V    I  
Sbjct: 766  LKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTILL 825

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L AIKG+G    + I+        F S+ D C RVD +K+N++ LE+L +AGA+     
Sbjct: 826  GLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDISK 885

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRFE 953
            +R     S++   K A +V +      +++F   +        LE+       N      
Sbjct: 886  NRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELLI 945

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAA-MVVSKQQKK 1008
            NE++ LG YFSGH +D  +   R      + +        + GN++R+ A M+    ++K
Sbjct: 946  NEKKALGMYFSGHIIDE-ESHWRNH--VSFSDLEKIQQPNMDGNSVRIIASMITPPARRK 1002

Query: 1009 TRKGSRIGWVTFSEPAKEYEANF 1031
            T+ G  +  +   +     +   
Sbjct: 1003 TKTGRVLYIINIDDEFDRADCLI 1025


>gi|262066954|ref|ZP_06026566.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
            33693]
 gi|291379302|gb|EFE86820.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
            33693]
          Length = 1133

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1038 (36%), Positives = 588/1038 (56%), Gaps = 38/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +E +  FVHL +H+ YSLLEG  S++N L K       ++A+TD  N+F A+EF +KA  
Sbjct: 1    MENN--FVHLNLHTEYSLLEGVNSIDNFLVKAKELGMNSLAVTDYANMFCAIEFYEKAKK 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +L +  ++              + ++ LL    EGY+ L++L S +Y   +
Sbjct: 59   MGIKPIIGLELPLYEKEE-----------QNIFTLTLLAKDYEGYKNLVKLASELY-KKK 106

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFKKLF-GDRL 182
              + +RI    L+E   +GLI L+    G I +A   N  S+  +  +  + ++F  +  
Sbjct: 107  DNRELRISKEILKE-HNKGLIALSSSMKGEIGKAILMNFPSEKLDSIVDEYIEIFSKENF 165

Query: 183  YVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +Q +   + +    +   L    +L LVATNN  ++  + YE  D+++ +     + 
Sbjct: 166  YLEIQANELPENKVINDKFYDLVKEKKLELVATNNVHYVDRDGYELQDIVICIQSGWKLK 225

Query: 242  QKDRPRVTPDHYL--KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             K+R R                S+     +A+ENT  IA  C+  ++      P +    
Sbjct: 226  DKNRKRAVSKELYLKSKEEMQRSLDEKFHKAIENTNYIASLCNLEIEFGNLQFPYYEVPN 285

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                    +  L+      ++    +         +D  +RL++EL+VI +M +SGYF++
Sbjct: 286  QYSGM---DEYLKAICYENIKKIYKENL------TKDILERLEYELSVIIKMGYSGYFIV 336

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI +AK+N IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD D
Sbjct: 337  VWDFIAYAKRNGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDID 396

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID C++RRDE+I YV +KYG ERVA IITFG ++A+AA+RD+GR L +   ++DRL KL+
Sbjct: 397  IDICRERRDELIDYVVHKYGRERVAHIITFGRMKARAAIRDIGRVLDIDLKKIDRLSKLV 456

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +        + + ++    +    D  + +++++S ++E   RH STHAAGI+I    L
Sbjct: 457  SSF---QTLEKTLKENVEVAKLYTTDIELQKVIDLSIRIENKVRHVSTHAAGILITKEDL 513

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
             + VP+Y D +  +  TQ+ MK +E  GL+K DFLGLK L+ +Q+++D++ + + + ++L
Sbjct: 514  DRTVPIYLDEKEGVIATQYQMKELEDLGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDIEL 573

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD + + +L+   + G+FQLES G+R+ ++ ++P+ +EDI+AL++LYRPGP+ + 
Sbjct: 574  YKIPLDDKKVFEMLSQGDSTGVFQLESPGIRKIMKRLKPNKLEDIVALLALYRPGPLQSG 633

Query: 659  V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +   + NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRA
Sbjct: 634  MVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMANYSLGEADLLRRA 693

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK    M + +E+FI  A +N  ++  A  IFEL+ KFA YGFNKSH+ AYA+ISY T
Sbjct: 694  MGKKNFAIMRENREKFIQRAVENNYTEEKADEIFELIDKFAGYGFNKSHSVAYAMISYWT 753

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K HYP  + AA MT E+     +  +  DA++  I I PP+VNTP   F++ ++ I 
Sbjct: 754  AYLKAHYPAFYFAAIMTSEISETGDVAYYFNDAKEHRISIYPPNVNTPSAYFEIKNDGIS 813

Query: 837  YSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            YSLAAIK +G   A+ I+E       +  L++F  R     +N+R LE+L+ +GALD   
Sbjct: 814  YSLAAIKNIGLNLAKKIVEDYEKHGTYTKLDEFMIRNKKNGMNKRALEALILSGALDELE 873

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R +   S+D +  +     K    +  N+F     T + K  L      N   +   E
Sbjct: 874  GNRKEKFLSIDKVLDFVSKAPKTDEIQQMNLFGAASKTIN-KFALTNSDDFNLDEKMTKE 932

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  LGFY S HPLD Y+ I+    I    E         I+    +   ++  T+K  ++
Sbjct: 933  KEFLGFYLSSHPLDKYRDIVTAFSINKLSEI-DIEESKVIKTFGTITGLKKVLTKKDEQM 991

Query: 1016 GWVTFSEPAKEYEANFFP 1033
               +     ++     FP
Sbjct: 992  ALFSILCYDRKISCIVFP 1009


>gi|328676562|gb|AEB27432.1| DNA polymerase III alpha subunit [Francisella cf. novicida Fx1]
          Length = 1159

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1043 (37%), Positives = 586/1043 (56%), Gaps = 45/1043 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131
             +L +D +  +               +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64   VELKVDTEFGI-------------CDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR 190
              SWL E+  E +I L GG  G + +A        A++ +    ++FG +   + + +  
Sbjct: 111  PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIINQNIEIFGTNNYIIEIHKLE 170

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248
               +     + ++ A  + L  VATN ++F+  +DY+ H++   +   T +  + R  + 
Sbjct: 171  YENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSKF 230

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP             E+
Sbjct: 231  TKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVDIPAG----LTEK 286

Query: 309  NELRNKAVAGLEVRLAQG-----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                     GL+ RL +      A    +  + Y+ R+  E+++I  M F GYFLIV DF
Sbjct: 287  EYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRVQREIDIICDMGFPGYFLIVEDF 346

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDFC
Sbjct: 347  IRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDFC 406

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
               RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  P
Sbjct: 407  IQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETP 466

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                       +    E   AD  V  ++E +QKLEGL R    HAAGIVI    +S   
Sbjct: 467  GTTFKKILHEGEP-LYEEMQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDFA 525

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD----LS 599
            P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  +  +         ++
Sbjct: 526  PVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINTKRPADQKPLDIA 585

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI 
Sbjct: 586  DIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENIP 645

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             + +RK+G+++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMGK
Sbjct: 646  TFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGK 705

Query: 720  KIKEEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K  EEM+KQ++ F    A  + I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTAW
Sbjct: 706  KKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAW 765

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYY 837
            +K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   V    I  
Sbjct: 766  LKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTILL 825

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L AIKG+G    + I+        F S+ D C RVD +K+N++ LE+L +AGA+     
Sbjct: 826  GLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDISK 885

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRFE 953
            +R     S++   K A +V +      +++F   +        LE+       N      
Sbjct: 886  NRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELLI 945

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAA-MVVSKQQKK 1008
            NE++ LG YFSGH +D  +   R      + +        + GN++R+ A M+    ++K
Sbjct: 946  NEKKALGMYFSGHIIDE-ESHWRNH--VSFSDLEKIQQPNMDGNSVRIIASMITPPARRK 1002

Query: 1009 TRKGSRIGWVTFSEPAKEYEANF 1031
            T+ G  +  +   +     +   
Sbjct: 1003 TKTGRVLYIINIDDEFDRADCLI 1025


>gi|330814006|ref|YP_004358245.1| DNA polymerase III alpha subunit [Candidatus Pelagibacter sp.
            IMCC9063]
 gi|327487101|gb|AEA81506.1| DNA polymerase III alpha subunit [Candidatus Pelagibacter sp.
            IMCC9063]
          Length = 1140

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 444/1040 (42%), Positives = 663/1040 (63%), Gaps = 29/1040 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++  F H +VH+ YS+ EGAL + ++     ++   ++ I+D+ N+   LEFSQ+   
Sbjct: 1    MPENNYFNHFKVHTQYSICEGALKIVDLAVHCTSNNVASVGISDSFNMCGVLEFSQEISK 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG QPIIG Q++    +N             +  I L+     GY+ L++L S  YL  +
Sbjct: 61   AGCQPIIGTQINFSFSEN---------NLEKMGKISLVAKNDTGYKNLLKLSSSSYLSIE 111

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              +     +  L +  ++GLI+L G S   +      N+   +E  L   +K F   LY+
Sbjct: 112  KNEDPHCDIQELID-NSDGLIVLVGASHSLLSSLVLENNILDSELLLQKIQKFFEGNLYI 170

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QRH   +++  E+Q++  +    +P++AT+   +L ++ YEAHD  + V   T V+  
Sbjct: 171  EIQRHNEPHEQALETQLLYFSEKFSIPIIATHEVFYLKKDMYEAHDAYICVGQKTYVNDI 230

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R R + +HY K+  EM  +F DLPEALEN   +A RCS+          + +    +  
Sbjct: 231  KRLRYSEEHYFKSDYEMSELFLDLPEALENNKNLALRCSYRPLT-----SKPMLPNFNTE 285

Query: 304  QKEEENELRNKAVAGLEVRLAQ-------GAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                 +EL+  A  GLE RL             +    Q Y++RL++E+ +I++MKFSGY
Sbjct: 286  SSNVNDELKINANKGLEDRLKNFILINIADEDQRLATKQVYKERLNYEIEMISKMKFSGY 345

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV+D+I+WAK NNIPVGPGRGSGAGS+ A+ L+ITD+DP++F L+FERFLNPDR+SMP
Sbjct: 346  FLIVSDYIKWAKSNNIPVGPGRGSGAGSLVAWCLSITDLDPIKFGLIFERFLNPDRISMP 405

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFCQ+ RD+VI YV++KY + +VAQIITFG LQA+ ALRD+GR + +PY +VD+L 
Sbjct: 406  DFDIDFCQEDRDKVINYVKDKYKN-KVAQIITFGKLQARMALRDIGRVIGLPYGRVDQLS 464

Query: 477  KLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            K+IP DP+ P++  +++A + R +EA+  DP++++L+ ++ KLEGL+R+ +THAAGIVIG
Sbjct: 465  KMIPFDPSRPLTLAESVAMEPRLQEAQKEDPTIEKLINLALKLEGLFRNIATHAAGIVIG 524

Query: 536  DRPLSQLVPMYRDVRS--DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            D+ L+++VP+Y+D  S   +PVTQF+M W E+AGL+KFDFLGLKTLT+++K+++ + +  
Sbjct: 525  DKNLTEIVPLYKDHDSSIPIPVTQFDMNWSEQAGLVKFDFLGLKTLTVIKKTIELIEKDS 584

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
             K+D+  IP DD +T+ LL++  T+GIFQLES+GMR+ L+ M P+  EDIIALV+LYRPG
Sbjct: 585  QKLDIEKIPLDDSKTFELLSSGETMGIFQLESAGMREVLKQMIPNKFEDIIALVALYRPG 644

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+ NI  YNNRK+G E+   +HP I+ +LKET GVIIYQEQVMQIAQ LSG+S  +AD+L
Sbjct: 645  PMQNIPSYNNRKHGLEEPDYLHPKIENILKETYGVIIYQEQVMQIAQALSGFSAGKADIL 704

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+AMGKK   EMD+QK+ FI GA KN I K  AV IF+L+ KFA YGFNKSHAAAYA+I+
Sbjct: 705  RKAMGKKKSAEMDRQKKDFIEGAIKNDIPKEQAVYIFQLVEKFAQYGFNKSHAAAYALIA 764

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQTA++KTHYP+ F +ASM++EM N +K+ +F ++ ++ +I++  P +N    DF   D 
Sbjct: 765  YQTAYLKTHYPLSFFSASMSMEMSNTDKLNQFYEELKRLSIKVHNPCINHCFADFVPKDG 824

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I+Y+L+ IK VG     ++++    +  F S+EDF  RV SK +N+  LE L+ AGA D
Sbjct: 825  TIFYALSGIKAVGFEAISNVIKEREENGKFLSMEDFLKRVSSKDINKLQLEGLIKAGAFD 884

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
            C   +R +L +++  I K ++  ++N      N+F  +      KI        +   + 
Sbjct: 885  CIDKNRSKLYENVPEIIKQSKSYDENLQVDQINLFESQTNDNF-KINFTVHPAWDEPEKI 943

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            + E   +GF+ S HPL  YK IL    +  ++        N   L+  V++ Q+KKT KG
Sbjct: 944  KREFESIGFFVSEHPLKNYKHILDNYSVVQFQSFSDNKNINECMLSGTVMAIQEKKTAKG 1003

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
                 V FS+ ++ +E   F
Sbjct: 1004 MPFAIVKFSDLSRMFEFFIF 1023


>gi|229006940|ref|ZP_04164570.1| DNA polymerase III subunit alpha [Bacillus mycoides Rock1-4]
 gi|228754340|gb|EEM03755.1| DNA polymerase III subunit alpha [Bacillus mycoides Rock1-4]
          Length = 1096

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1015 (34%), Positives = 573/1015 (56%), Gaps = 46/1015 (4%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +L+ A  ++ ++ +       +++ITD N ++  + F +     G++PIIG    +  ++
Sbjct: 1    MLKSACKIDELVSRAKELGFSSLSITDENVMYGVIPFYKACKKNGVRPIIGLTASVFSEE 60

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                             +VLL     GYQ L+++ S +    +      I   WL     
Sbjct: 61   E-----------EQSYPLVLLAENEMGYQNLLKISSTIMTKSKDG----IPKKWLSHY-A 104

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-SQV 200
            +GLI ++ G  G I++       ++AE+    ++ +FG   Y++LQ H   D      ++
Sbjct: 105  KGLIAISPGKDGEIEQLLLQGRDEIAEEVARAYQNMFG-SFYMSLQHHAIQDELFLQEKL 163

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
             Q A    +P+VATN+  ++++ D    + L++V   T ++  DRPR  T  +YLK+ +E
Sbjct: 164  PQFANEINIPVVATNDVRYVNQSDALVQECLLSVQSGTKMTDPDRPRLKTDQYYLKSSAE 223

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M ++FS   EAL+NTV IA RC   +  H   LP+F         +  +  LR     GL
Sbjct: 224  MEALFSHAEEALQNTVCIAERCHVEIPFHVNQLPKFPVP----SNETSDAYLRRICEDGL 279

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                       G     +R+RL+ EL VI+ M FS YFLIV DF+++  ++ I  GPGRG
Sbjct: 280  NK-------RYGAVQDVHRKRLNHELEVISCMGFSDYFLIVWDFMKYGHEHGILTGPGRG 332

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            S AGS+ +Y L ITDIDP+ ++LLFERFLNP+R+++PD DIDF   RRDE+IRYV++KYG
Sbjct: 333  SAAGSLVSYVLEITDIDPIEYNLLFERFLNPERVTLPDIDIDFPDIRRDEMIRYVKDKYG 392

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
              RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     +      +    R
Sbjct: 393  QLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSRVGITLKEA-YEESGSLR 451

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
            E    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +  +D+ VTQ+ 
Sbjct: 452  EFVQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-EGHNDVYVTQYP 510

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
             + +E+ GL+K DFLGL+ LTLL+  L   + + G ++D+  +P  D +T+ LL    T 
Sbjct: 511  AEVLEELGLLKMDFLGLRNLTLLENILTFIVNKTGKQIDIRNLPLQDEKTFQLLGRGDTT 570

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G+FQLES GMR  L  ++P+  EDI+A+ +LYRPGP++ I  +   K+GK +I  +H  +
Sbjct: 571  GVFQLESGGMRNVLRSLKPNEFEDIVAVNALYRPGPMEQIPTFIESKHGKCQIHYLHSDL 630

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
             P+LK T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK +E +D++++ F+ G  +
Sbjct: 631  KPILKSTYGVIVYQEQIMQIASQLAGFSLGEADLLRRAVSKKNREILDQERKHFVQGCLR 690

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +YP+EF+ A ++  + N
Sbjct: 691  NGYDETSAEQIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYPLEFMTALLSSAIGN 750

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
             +KI ++ ++ ++    ++PPS++    +F++  N I YSL +I+ +G  T   ++E   
Sbjct: 751  EDKIVQYIRETKRKGFHVLPPSLHRSSYNFQIEGNAIRYSLLSIRNIGMATVNAVIEERE 810

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
              PF  L +FC R+ +K +  R LE+ V+AG  D F  SR  L  S+    +YA      
Sbjct: 811  RNPFQDLFEFCLRMPAKFVTERNLEAFVWAGCFDDFQVSRTTLFNSIKGALEYA------ 864

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
                  ++          K    +    +   +  NE+  LGFY S +P   Y  +++++
Sbjct: 865  ------SLARELGEESVPKSVYVQGEELSFIEQLNNEKEALGFYLSSYPTAQYAKLVKEL 918

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             I    +++   R    R    V   +  +T+K  ++ +VTF +   E EA  FP
Sbjct: 919  EIPSLAQAMRQKRNVQ-RAIVYVTGVKVIRTKKLQKMAFVTFCDQNDEMEAVVFP 972


>gi|237739930|ref|ZP_04570411.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
 gi|229421947|gb|EEO36994.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
          Length = 1133

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1038 (35%), Positives = 589/1038 (56%), Gaps = 38/1038 (3%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +E +  FVHL +H+ YSLLEG  S+++ L +       ++A+TD  N+F A+EF +KA  
Sbjct: 1    MENN--FVHLNLHTEYSLLEGVNSIDSFLTRAKELGMNSLAVTDYANMFCAIEFYEKAKK 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +L +  ++              + ++ LL    EGY+ L++L S +Y   +
Sbjct: 59   MGIKPIIGLELPLYEKEE-----------QNIFTLTLLAKDYEGYKNLVKLASELY-KKK 106

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFKKLF-GDRL 182
                +RI    L+E  ++GLI L+    G I +A   N  S+  +  +  + ++F  +  
Sbjct: 107  DNGELRISKGILKEY-SKGLIALSSSMKGEIGKAILMNFPSEKLDSIVDEYIEIFSKENF 165

Query: 183  YVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +Q +   +      +   LA    + LVATNN  ++  + YE  D+++ +     + 
Sbjct: 166  YLEIQANELPETKVINDKFYDLAKLKNIELVATNNVHYVDRDGYELQDIVICIQSGWKLK 225

Query: 242  QKDRPRVTPDHYL--KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             K+R R                S+     +A+ENT  IA  C+  ++      P +    
Sbjct: 226  DKNRKRAVSKELYLKSKEEMQRSLDERFHKAIENTNYIASLCNLEIEFGNLQFPYYEVPN 285

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                    +  L++     ++    +         +D  +RL++EL+VI +M +SGYF++
Sbjct: 286  QYSGM---DEYLKSICYENIKKIYKENL------TKDILERLEYELSVIIKMGYSGYFIV 336

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI +AK+N IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD D
Sbjct: 337  VWDFIAYAKRNGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDID 396

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID C++RRDE+I YV +KYG ERVA IITFG ++A+AA+RD+GR L +   ++DRL KL+
Sbjct: 397  IDICRERRDELIDYVVHKYGRERVAHIITFGRMKARAAIRDIGRVLDIDLKKIDRLSKLV 456

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +        + + ++    +    D  + +++++S ++E   RH STHAAGI+I    L
Sbjct: 457  SSF---QTLEKTLKENVEVAKLYTTDIELQKVIDLSIRIENKIRHVSTHAAGILITKEDL 513

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
             + VP+Y D +  +  TQ+ MK +E  GL+K DFLGLK L+ +Q+++D++ + + + ++L
Sbjct: 514  DRTVPIYLDEKEGVIATQYQMKELEDLGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDIEL 573

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD + + +L+   + G+FQLES+G+R+ ++ ++P+ +EDI+AL++LYRPGP+ + 
Sbjct: 574  YKIPLDDKKVFEMLSQGDSTGVFQLESTGIRKIMKRLKPNKLEDIVALLALYRPGPLQSG 633

Query: 659  V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +   + NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRA
Sbjct: 634  MVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMANYSLGEADLLRRA 693

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK    M + +E+FI  A +N  ++  A  IFEL+ KFA YGFNKSH+ AYA+ISY T
Sbjct: 694  MGKKNFTIMRENREKFIQRAVENNYTEEKADEIFELIDKFAGYGFNKSHSVAYAMISYWT 753

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K HYP  + AA MT E+     +  +  DA++  I I PP+VNTP   F++ ++ I 
Sbjct: 754  AYLKAHYPAFYFAAIMTSEISETGDVAYYFNDAKEHRISIYPPNVNTPSAYFEIKNDGIS 813

Query: 837  YSLAAIKGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            YSLAAIK +G   A+ I+E       +  L++F  R     +N+R LE+L+ +GALD   
Sbjct: 814  YSLAAIKNLGLNLAKKIVEDYEKYGAYTKLDEFVLRNKKNGMNKRALEALILSGALDELE 873

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R +   S+D +  +     K    +  N+F     T  DK  L      +   +   E
Sbjct: 874  GNRKEKFLSIDKVLDFVSKAPKTDEIQQMNLFGAASKT-IDKFVLTNSEDFSLDEKLTKE 932

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            +  LGFY S HPLD Y+ I+    I    E         ++    ++  ++  T+K  ++
Sbjct: 933  KEFLGFYLSSHPLDKYRDIVTIFSINKLSEI-DMEETKVLKTFGTIMGLKKLLTKKDEQM 991

Query: 1016 GWVTFSEPAKEYEANFFP 1033
               +     +      FP
Sbjct: 992  ALFSILCYDRVISCIAFP 1009


>gi|297583642|ref|YP_003699422.1| DNA polymerase III subunit alpha [Bacillus selenitireducens MLS10]
 gi|297142099|gb|ADH98856.1| DNA polymerase III, alpha subunit [Bacillus selenitireducens MLS10]
          Length = 1126

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1029 (35%), Positives = 577/1029 (56%), Gaps = 38/1029 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++ HL VH+ +SLL   + ++++ ++ ++    A+A+TD NN++ A+ F +   A GI+P
Sbjct: 2    AYAHLHVHTEFSLLSSLIRIDDLTEQASSQGFTALAMTDLNNIYGAVSFYRACRARGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +L ++            +      S++L   +  GYQ L+ LV+     +      
Sbjct: 62   ILGVELSMERLS-------LNSGRDVPTSLLLYAKSFRGYQSLVRLVTMACAREA---EP 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
             + +  L+  G E L++++  S G +         + A   L T + +FG+  +YV +Q 
Sbjct: 112  YVTMDELEAEGEE-LVVISPFSEGRMQLLAEEGRDEEASAFLKTIRNVFGEEDVYVEIQN 170

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +R R  ++ +      +P+VATN+   L  + + A   L A+     + + D   
Sbjct: 171  HWLRWERERMQRIRKWLTNERVPVVATNHVHALEPDQFGALQTLQAIKDGVRIEEIDESL 230

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              PD YLKN  EM   F+    AL+ T EI  +C   L +   ILP +   + +      
Sbjct: 231  RAPDMYLKNEEEMREQFAKWNTALDVTEEIVAKCEVELPLGGQILPSYPVSDGE----TA 286

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LRN    GL  R            + +R+RL+ EL VI  M +  YFLIVADF+ +A
Sbjct: 287  ASLLRNWCEKGLYERYH-------APEEKHRERLEKELQVIHDMGYEDYFLIVADFMDYA 339

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +N I  GPGRGS AGS+ AY L ITD+DP+ + LLFERFLNP+R+SMPD DIDF    R
Sbjct: 340  HRNGILTGPGRGSAAGSLVAYLLRITDVDPILYDLLFERFLNPERVSMPDIDIDFSDLDR 399

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D+VI YV  +YG  +VAQI+TFG+L AKAALRD  R L +P + VDRL KLIP  P   +
Sbjct: 400  DQVIHYVHERYGASKVAQIVTFGTLAAKAALRDTARVLGIPTADVDRLSKLIPARPNMTI 459

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            +   + +   F +A    P  D LL+ +  +EG+ RH S HAAG+V+   PL+ +VP+  
Sbjct: 460  TAA-LEEAPAFNKAIREMPKGDLLLKTALDIEGIARHTSIHAAGVVMSKDPLTDIVPLQ- 517

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606
                 L +TQF M  +E  GL+K DFLGL+ L+ +++  + + ++  +  DL+ +P +D 
Sbjct: 518  PSNDGLTITQFPMGDLEDLGLLKMDFLGLRNLSFMERIAETVKEKTGEALDLTRLPLEDE 577

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              + LL    T GIFQLES GMR+ L+ ++P+  EDI+A+ +LYRPGP++ I +Y  RKN
Sbjct: 578  RMFALLGKGETNGIFQLESQGMRRVLKQLKPERFEDIVAVNALYRPGPMEQIPLYIRRKN 637

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+E +   H  +  +L  T GV+IYQEQ+MQIA  ++G+SL+EAD+LRRA+ KK KEE++
Sbjct: 638  GEEPVTYPHEDLREILAPTYGVMIYQEQIMQIASKMAGFSLAEADMLRRAVSKKKKEELE 697

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + +  F+ GA   G ++  A  ++EL+ +FA+YGFN+SHA AY++IS + AW+KT +P  
Sbjct: 698  RSRTLFVEGAVGRGYAEDEATRVYELIERFANYGFNRSHAVAYSMISCRLAWLKTVHPEA 757

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+AA M   +   +K+ ++  +A+Q  +++  PSV      F V +  I  +L  I+  G
Sbjct: 758  FMAALMEQSVHAPDKLVRYIAEAKQMGLRVSGPSVQRSSRRFTVNNGEIVMALQVIRHTG 817

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
               A  I+ A   + PF SL DFC RV  K ++R+ +ESL+ AGA+D FG  R  L  SL
Sbjct: 818  HHAAAEIIRAREEEGPFGSLFDFCKRVSLKIVSRKTVESLIMAGAMDDFGVDRTSLFASL 877

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            ++  ++      +   +  ++F  E+G    +    +        + + E+ V+GFY SG
Sbjct: 878  EDAFQFG-----DEDAEGFSLFEQEEG----EPDYRQGGRMTLMDKLDEEREVMGFYLSG 928

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            HP++    +L+    +   E++        +RLA M+   +  +T+KG ++ +V+ S+  
Sbjct: 929  HPVEDDLELLKTYKRQSILEAMGVASEKMTVRLAGMIEHIRLIRTKKGDQMAFVSMSDET 988

Query: 1025 KEYEANFFP 1033
               +   FP
Sbjct: 989  GAMDITVFP 997


>gi|289548089|ref|YP_003473077.1| DNA polymerase III subunit alpha [Thermocrinis albus DSM 14484]
 gi|289181706|gb|ADC88950.1| DNA polymerase III, alpha subunit [Thermocrinis albus DSM 14484]
          Length = 1150

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/1058 (35%), Positives = 543/1058 (51%), Gaps = 67/1058 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL +H+ YSLL+GA+ + ++ ++  A    A+AITD  NLF  LEF +     GI+P
Sbjct: 3    DFVHLHLHTQYSLLDGAIKIKDLAERAQAYGYRAVAITDHGNLFGLLEFYKTLKEKGIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTP---FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++G +             +G            I+L+    EG + L  L S  Y  +   
Sbjct: 63   LLGMEAYFTTGSRFDRKGKGSDDNLTDRINHHIILIAKDQEGLKNLFRLSSLSY-REGFY 121

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               RI    LQ+    GLI +T    G           + AE+ +   K LFGD LY+ L
Sbjct: 122  YKPRIDYELLQKYHR-GLIAVTACLKGVPTYYASMGEERKAEEWVKKLKDLFGDDLYLEL 180

Query: 187  QRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV----VS 241
            Q +   ++   ++ ++ +A    + LVAT ++ +L  ED  AH VLMA+           
Sbjct: 181  QANGLPEQETANRVLINIAKRFGVKLVATADAHYLDPEDKTAHSVLMALQMKKTLQDIQK 240

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            +  +  V   H+   +              +                  +  +       
Sbjct: 241  EGLKYSVCDLHFAPPQEMWERFRGKFDGWEDALKNTLEVAEKCADSFPQLENKDYLLPKA 300

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                EE   L + A  GL  R A G       +++Y  RL++E+  + RM F+GYFLIV 
Sbjct: 301  YEGVEEGQLLEDLAREGLRRRQALGHCP---DSKEYWDRLEYEIEQVRRMGFAGYFLIVQ 357

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI WAK   +PVGPGRGS AGS+ AYAL ITD+DP++  LLFERFLNP+R+SMPD D+D
Sbjct: 358  DFINWAKNQGVPVGPGRGSAAGSLLAYALGITDVDPVKHGLLFERFLNPERISMPDVDVD 417

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC + R++VI+YV+ KYG ++VAQIIT+  ++AK ALRD  RAL +PYS  DRL KL+P 
Sbjct: 418  FCMEGREKVIQYVREKYGEDKVAQIITYNVMKAKQALRDAARALGLPYSVGDRLAKLVPP 477

Query: 482  DP--AHPVSLQAIADDS--------------------RFREARLADPSVDRLLEISQKLE 519
                   +SL+ +                         FR+    D  + R++EI+ KLE
Sbjct: 478  GDVQGSWLSLEEMVHTPLEELLEKYGHHRTDIEENVKTFRQLMETDAEIRRVVEIALKLE 537

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            GL RH S HAAGIVI   PL ++VP Y D       TQ +M  +EK GL+K DFLGLKTL
Sbjct: 538  GLVRHTSLHAAGIVISPLPLEEVVPTYYD--DGQVATQLDMGQLEKLGLVKMDFLGLKTL 595

Query: 580  TLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            T L    + + +R    VD   IP DD  T+ LL    T G+FQLES GM++ L  + PD
Sbjct: 596  TELNAMRNLIRERHKADVDFLKIPLDDERTFELLRKGNTSGVFQLESKGMQRLLSKLSPD 655

Query: 639  CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
              ED++A ++LYRPGP+ +  +  Y  RK+GKE++    P ++P+LKET GV +YQEQ+M
Sbjct: 656  RFEDLVAAIALYRPGPLKSGLVDSYVKRKHGKEEVEYPFPELEPVLKETYGVWVYQEQIM 715

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            + +Q+L+G++  EAD LR+A+GKK KE M   +E+FI GA + G  +     ++E   KF
Sbjct: 716  KASQILAGFTPGEADTLRKAIGKKDKELMASLREKFIRGAVERGYKEEKITKLWEDFEKF 775

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A Y FNKSH+ AY  +SY TA++K HY  EF A  ++ E ++ + +     DA++  I I
Sbjct: 776  ASYSFNKSHSVAYGYLSYWTAYLKAHYTEEFFAVKLSYEKNDAKFL-ALVNDAKKHRITI 834

Query: 817  MPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            +PP +N   V F +  +R + + LA IKG+G  TA  I++A       +         + 
Sbjct: 835  LPPDINKSHVHFVIEGDRTLRFGLARIKGIGEDTAYQIVKARK----TTWTQPSQVARAA 890

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
             LN++ LE+L+ AGA D  G SR  LL++L++         KN      ++F     +  
Sbjct: 891  GLNKKALEALIKAGAFDFTGKSRTALLKALES---------KNALLGGVSLFEKNSQSTE 941

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
            D+              F  E+ VLGFY + HP+DV++  L         E V  + G   
Sbjct: 942  DR----------QEDIFHYEKEVLGFYLTRHPIDVWEGFLED--TCKKLEEVEELEGGPY 989

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              A  +   + KKT K + +     ++          P
Sbjct: 990  LFAGSLTDIKVKKTTKNTLMATAHLTDRTGMVPLIIPP 1027


>gi|56707551|ref|YP_169447.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis SCHU S4]
 gi|110670022|ref|YP_666579.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis FSC198]
 gi|254370074|ref|ZP_04986080.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis FSC033]
 gi|56604043|emb|CAG45035.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis SCHU S4]
 gi|110320355|emb|CAL08418.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis FSC198]
 gi|151568318|gb|EDN33972.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis FSC033]
 gi|282158705|gb|ADA78096.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            tularensis NE061598]
          Length = 1159

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1043 (37%), Positives = 588/1043 (56%), Gaps = 45/1043 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131
             +L +D +  +               +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64   VELKVDTEFGI-------------CDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR 190
              SWL E+  E +I L GG  G + +A        A++ +    ++FG +   + + +  
Sbjct: 111  PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYIIEIHKLE 170

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248
               +     + ++ A  + L  VATN ++F+  +DY+ H++   +   T +  + R  + 
Sbjct: 171  YENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSKF 230

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP             E+
Sbjct: 231  TKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVNIPAG----LTEK 286

Query: 309  NELRNKAVAGLEVRLAQG-----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                     GL+ RL +      A    +  + Y+ RL  E+++I  M F GYFLIV DF
Sbjct: 287  EYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVEDF 346

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDFC
Sbjct: 347  IRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDFC 406

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
               RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  P
Sbjct: 407  IQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETP 466

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                  + + +     E   AD  V  ++E +QKLEGL R    HAAGIVI    +S   
Sbjct: 467  GTTFK-KILHEGETLYEEVQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDFA 525

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD----LS 599
            P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  +  +         ++
Sbjct: 526  PVYCENKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDIA 585

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI 
Sbjct: 586  DIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENIP 645

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             + +RK+ +++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMGK
Sbjct: 646  TFIDRKHSRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGK 705

Query: 720  KIKEEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K  EEM+KQ++ F    A  + I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTAW
Sbjct: 706  KKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAW 765

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYY 837
            +K HYP E++AA M+ +M N +++ KF  D +  +I ++ P+VN    D   V    I  
Sbjct: 766  LKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMSITVLAPNVNKSVYDCIAVSKGTILL 825

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L AIKG+G    + I+        F S+ D C RVD +K+N++ LE+L +AGA+     
Sbjct: 826  GLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDISK 885

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRFE 953
            +R     S++   K A +V +      +++F   +        LE+       N      
Sbjct: 886  NRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELLI 945

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAA-MVVSKQQKK 1008
            NE++ LG YFSGH +D  +   R      + +        + GN++R+ A M+    ++K
Sbjct: 946  NEKKALGMYFSGHIIDE-ESHWRNH--VSFSDLEKIQQPNMDGNSVRIIASMITPPARRK 1002

Query: 1009 TRKGSRIGWVTFSEPAKEYEANF 1031
            T+ G  +  +   +     +   
Sbjct: 1003 TKTGRVLYIINIDDEFDRADCLI 1025


>gi|126641511|ref|YP_001084495.1| DNA polymerase III alpha chain [Acinetobacter baumannii ATCC 17978]
          Length = 1155

 Score =  658 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1009 (36%), Positives = 563/1009 (55%), Gaps = 47/1009 (4%)

Query: 41   QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
             PA+A+TD +NL +A++F       GI+PI+G  + ++                      
Sbjct: 1    MPALALTDLSNLHAAVKFYNSCLKKGIKPILGSTIRLN---------------DAQHRAT 45

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            LL  +  G++ L E+VSR ++  Q      +   W+ E   + +I+L G     + +   
Sbjct: 46   LLAMSDIGWKGLTEIVSRGFIEGQQLSIPCVQKEWVLEQHQD-IIVLLG-QHSDVGQMLC 103

Query: 161  FNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLF 219
             ++ Q AE  L  + + FG+R+Y+ L R  R  +     +  +LA  + + +VA N+  F
Sbjct: 104  SSNPQKAEPLLEEWIEKFGNRVYLALTRTDRPGEEDFIQEAAKLAAKYNIGVVAHNDVHF 163

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            + +ED+EAH+  + +A   V++   RPR  +P+ Y K   EM+ +FSD+P A+ENT +IA
Sbjct: 164  IEKEDFEAHEARVCIADGYVLADDRRPRLYSPEQYFKTSDEMIELFSDIPSAIENTYQIA 223

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV------RLAQGAIAKGY 332
            +RC+  L++    LP +   +   I    +    + +  GLE        + +       
Sbjct: 224  KRCNVTLKLGTYFLPEYPIPDGFTI----DTYFEHLSKEGLEERLNYLYPVEKRGEDWPE 279

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
              + Y +R+D+E+ +I +M F GYFLIV DFIQWAK N +PVGPGRGSGAGS+ AY+L I
Sbjct: 280  IRKPYDERIDYEVGIILKMGFPGYFLIVMDFIQWAKNNGVPVGPGRGSGAGSLVAYSLKI 339

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            TD+DPLR+ LLFERFLNP+R+SMPDFD+DFC   RD VI YV   YG E V+QI TFG++
Sbjct: 340  TDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYVSRTYGREAVSQIATFGTM 399

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR-- 510
             AK A+RDV R L   Y   DR+ K++P  P       AI  + + ++      + D   
Sbjct: 400  AAKGAIRDVARVLGKSYGLADRISKMVPTKPLGVDLATAIEMEPQLKDIVTNPSNPDNDD 459

Query: 511  ---LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
               + E++ KLEG+ R+   HA G+VI    ++    +  D      V Q++   +E AG
Sbjct: 460  ASEIWEMALKLEGITRNTGKHAGGVVIAPGKITDFSAVLCDADGTNRVAQYDKDDVEAAG 519

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKV---DLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            L+KFDFLGL+ LT+++ ++  + +        ++S +P DD + Y +     T  +FQ E
Sbjct: 520  LVKFDFLGLRNLTVIEDAIQNINKNRDSNDPLNISHVPLDDPKAYSVFADANTTAVFQFE 579

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            S GM++ L+  +P   E+IIA VSLYRPGP+D I  +   +    +   +HPL++ +L+ 
Sbjct: 580  SVGMKRMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFI-HRMHGGEFEYLHPLLEGVLEP 638

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+++YQEQVMQ AQ+ +GY+L  AD+LRRAMGKK  EEM KQ++ F+ GA + GI ++
Sbjct: 639  TYGIMVYQEQVMQTAQICAGYTLGGADLLRRAMGKKKPEEMVKQRQIFLEGAGQKGIDES 698

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
             A +IF+ + KFA YGFNKSHAAAYA+++Y TAW+K HYP EF+AA M+ EM N + +  
Sbjct: 699  TANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHYPAEFMAAVMSSEMQNTDSVVF 758

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIME-ASADKPF 862
               D R   ++++PPSVN     F   D++ I Y L AIKGVG    + +++      P+
Sbjct: 759  LIDDCRNNGLEVLPPSVNMSTYHFHASDDKTIVYGLGAIKGVGEQAMQSVIDSRRQQGPY 818

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
              L DFC R+D KK+N+R LE+L+ AGALDC G  R  L+  L    + A+    NR + 
Sbjct: 819  TDLFDFCHRIDLKKINKRTLEALIRAGALDCLGIERSSLMAQLPEAVQAAEQARSNRESG 878

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
              ++F   +     +   +     +  VR + E+  LG Y +GHP+DVY+  L+      
Sbjct: 879  IMDLFGEVEEV--QRKPAKPVKPWSDEVRLKGEKDTLGLYLTGHPIDVYRQELKAFIPAK 936

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
              E  AT RG     A +V+          +R+  V   +     E + 
Sbjct: 937  LNEITATRRGVTTVYAGLVLDVANFP----NRVVIV-LDDGTARIEVSC 980


>gi|225630393|ref|YP_002727184.1| DNA polymerase III, alpha subunit [Wolbachia sp. wRi]
 gi|225592374|gb|ACN95393.1| DNA polymerase III, alpha subunit [Wolbachia sp. wRi]
          Length = 1158

 Score =  658 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 468/1025 (45%), Positives = 657/1025 (64%), Gaps = 45/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+VHS YSLLE ++ +  ++     ++ PA+AITD+ NLF +LEF++ A + GIQ I
Sbjct: 51   FIHLRVHSVYSLLESSVKIEELIGLCLRNKMPAVAITDSGNLFGSLEFAEYAASRGIQLI 110

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS-V 129
            IGC + +   +                 I+LL    +GY  L+ LVS  +   +      
Sbjct: 111  IGCNIIVKHSE-------------QNLPILLLAKNEQGYTNLVTLVSESFRKRKNNSDIP 157

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L  + + GLI LTG   G + +       +  EK L      F   LYV LQRH
Sbjct: 158  YVDFDELLNL-STGLIALTG---GCLAQLLLGQDKETVEKLL----SAFNGHLYVELQRH 209

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E  ++  AY   +PLVATN+  F +  DYEA+D+L  ++  +   + +R ++
Sbjct: 210  GLSKELELEETLIDFAYQRNIPLVATNDVFFPNRSDYEAYDILTCISEGSYALENNRKKL 269

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T +HY K+ +EM  +FSD+PEA+ NT+ IA+RCS++ +   PILP+F  +E     K E 
Sbjct: 270  TTEHYFKSVAEMEELFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCRE----NKTEN 325

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             ELR +AVAGLE R+A          + Y  RL++EL+VI  M ++GYFLIV+DFI+W+K
Sbjct: 326  EELREQAVAGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSK 382

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N IPVGPGRGSGAGS+ A+ L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++RD
Sbjct: 383  ANGIPVGPGRGSGAGSIVAWGLQITDLDPIKFGLIFERFLNPDRISMPDFDIDFCQEKRD 442

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI YVQ KYG   VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +PV+
Sbjct: 443  LVIDYVQKKYG--YVAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPVT 500

Query: 489  -LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              QAI  D   ++ R +D  + +LL+IS KLEG+YRH STHAAGIVI D+ L   VP+Y 
Sbjct: 501  LSQAIEFDQNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVYY 560

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D  S LP+TQ++MK++EKAGLIKFDFLGL TLTL+      + +   K+D+S +P DD +
Sbjct: 561  DPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDRQKIDISSVPLDDQK 620

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L++  ++G+FQLESSGMR+AL  ++PDCIEDIIAL+SLYRPGP+DNI  Y  RK+G
Sbjct: 621  TYEMLSSGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARKHG 680

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             EK   IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIKEEMDK
Sbjct: 681  LEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKEEMDK 740

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+E FI GA+KNG+    A  IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+EF
Sbjct: 741  QRELFIQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPLEF 800

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A M L +D+ +K+  F   A+   + ++ P +N    +F + D RI Y +AA++ VG 
Sbjct: 801  FTALMNLNIDDRDKLNLFYHAAKFSGVTVLSPDINKSQAEFSIEDERIRYGIAALRNVGF 860

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            + A  I+   +      + +F        +N+R LESL+ +GA D    +R QL +S+D 
Sbjct: 861  SIAEGIVNVRSSAC-KDIWEFIQN-SGHIINKRALESLIKSGAFDSVHKNRKQLYESMDT 918

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +  +A   +++R +    +F         K  LE     +   + E+E   LGFY + HP
Sbjct: 919  LIYFANKNKQDRESSQAALFGSLDVL---KPKLENVEDFDEEEKLEHELFSLGFYLTNHP 975

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L+ ++ +L K+ I    E          + A ++++ + + + +G R   +T S+P    
Sbjct: 976  LEKFRTLLEKLNIGFIGE------NRTAKTAGVILNARMRTSERG-RFVILTLSDPHNVS 1028

Query: 1028 EANFF 1032
            E  F+
Sbjct: 1029 EIAFY 1033


>gi|58696665|ref|ZP_00372218.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of
            Drosophila simulans]
 gi|58537166|gb|EAL60270.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of
            Drosophila simulans]
          Length = 1120

 Score =  658 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 468/1025 (45%), Positives = 657/1025 (64%), Gaps = 45/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+VHS YSLLE ++ +  ++     ++ PA+AITD+ NLF +LEF++ A + GIQ I
Sbjct: 13   FIHLRVHSVYSLLESSVKIEELIGLCLRNKMPAVAITDSGNLFGSLEFAEYAASRGIQLI 72

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS-V 129
            IGC + +   +                 I+LL    +GY  L+ LVS  +   +      
Sbjct: 73   IGCNIIVKHSE-------------QNLPILLLAKNEQGYTNLVTLVSESFRKRKNNSDIP 119

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L  + + GLI LTG   G + +       +  EK L      F   LYV LQRH
Sbjct: 120  YVDFDELLNL-STGLIALTG---GCLAQLLLGQDKETVEKLL----SAFNGHLYVELQRH 171

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E  ++  AY   +PLVATN+  F +  DYEA+D+L  ++  +   + +R ++
Sbjct: 172  GLSKELELEETLIDFAYQRNIPLVATNDVFFPNRSDYEAYDILTCISEGSYALENNRKKL 231

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T +HY K+ +EM  +FSD+PEA+ NT+ IA+RCS++ +   PILP+F  +E     K E 
Sbjct: 232  TTEHYFKSVAEMEELFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCRE----NKTEN 287

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             ELR +AVAGLE R+A          + Y  RL++EL+VI  M ++GYFLIV+DFI+W+K
Sbjct: 288  EELREQAVAGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSK 344

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N IPVGPGRGSGAGS+ A+ L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++RD
Sbjct: 345  ANGIPVGPGRGSGAGSIVAWGLQITDLDPIKFGLIFERFLNPDRISMPDFDIDFCQEKRD 404

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI YVQ KYG   VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +PV+
Sbjct: 405  LVIDYVQKKYG--YVAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPVT 462

Query: 489  -LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              QAI  D   ++ R +D  + +LL+IS KLEG+YRH STHAAGIVI D+ L   VP+Y 
Sbjct: 463  LSQAIEFDQNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVYY 522

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D  S LP+TQ++MK++EKAGLIKFDFLGL TLTL+      + +   K+D+S +P DD +
Sbjct: 523  DPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDRQKIDISSVPLDDQK 582

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L++  ++G+FQLESSGMR+AL  ++PDCIEDIIAL+SLYRPGP+DNI  Y  RK+G
Sbjct: 583  TYEMLSSGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARKHG 642

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             EK   IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIKEEMDK
Sbjct: 643  LEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKEEMDK 702

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+E FI GA+KNG+    A  IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+EF
Sbjct: 703  QRELFIQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPLEF 762

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A M L +D+ +K+  F   A+   + ++ P +N    +F + D RI Y +AA++ VG 
Sbjct: 763  FTALMNLNIDDRDKLNLFYHAAKFSGVTVLSPDINKSQAEFSIEDERIRYGIAALRNVGF 822

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            + A  I+   +      + +F        +N+R LESL+ +GA D    +R QL +S+D 
Sbjct: 823  SIAEGIVNVRSSAC-KDIWEFIQN-SGHIINKRALESLIKSGAFDSVHKNRKQLYESMDT 880

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +  +A   +++R +    +F         K  LE     +   + E+E   LGFY + HP
Sbjct: 881  LIYFANKNKQDRESSQAALFGSLDVL---KPKLENVEDFDEEEKLEHELFSLGFYLTNHP 937

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L+ ++ +L K+ I    E          + A ++++ + + + +G R   +T S+P    
Sbjct: 938  LEKFRTLLEKLNIGFIGE------NRTAKTAGVILNARMRTSERG-RFVILTLSDPHNVS 990

Query: 1028 EANFF 1032
            E  F+
Sbjct: 991  EIAFY 995


>gi|254372464|ref|ZP_04987953.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            novicida GA99-3549]
 gi|151570191|gb|EDN35845.1| DNA polymerase III alpha subunit [Francisella novicida GA99-3549]
          Length = 1159

 Score =  658 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1043 (37%), Positives = 586/1043 (56%), Gaps = 45/1043 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131
             +L +D +  +               +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64   VELKVDTEFGI-------------CDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR 190
              SWL E+  E +I L GG  G + +A        A++ +    ++FG +   + + +  
Sbjct: 111  PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIINQNIEIFGTNNYIIEIHKLE 170

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248
               +     + ++ A  + L  VATN ++F+  +DY+ H++   +   T +  + R  + 
Sbjct: 171  YENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSKF 230

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP             E+
Sbjct: 231  TKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVDIPAG----LTEK 286

Query: 309  NELRNKAVAGLEVRLAQG-----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                     GL+ RL +      A    +  + Y+ RL  E+++I  M F GYFLIV DF
Sbjct: 287  EYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVEDF 346

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDFC
Sbjct: 347  IRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDFC 406

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
               RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  P
Sbjct: 407  IQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETP 466

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                       +    E   AD  V  ++E +QKLEGL R    HAAGIVI    +S   
Sbjct: 467  GTTFKKILHEGEP-LYEEMQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDFA 525

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD----LS 599
            P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  +  +         ++
Sbjct: 526  PVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKRLDIA 585

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI 
Sbjct: 586  DIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENIP 645

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             + +RK+G+++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMGK
Sbjct: 646  TFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGK 705

Query: 720  KIKEEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K  EEM+KQ++ F    A  + I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTAW
Sbjct: 706  KKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAW 765

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYY 837
            +K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   V    I  
Sbjct: 766  LKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTILL 825

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L AIKG+G    + I+        F S+ D C RVD +K+N++ LE+L +AGA+     
Sbjct: 826  GLGAIKGLGGEAIKSILTERDIAGEFCSIFDLCRRVDLRKVNKKALEALCYAGAIKDISK 885

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRFE 953
            +R     S++   K A +V +      +++F   +        LE+       N      
Sbjct: 886  NRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELLI 945

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAA-MVVSKQQKK 1008
            NE++ LG YFSGH +D  +   R      + +        + GN++R+ A M+    ++K
Sbjct: 946  NEKKALGMYFSGHIIDE-ESHWRNH--VSFSDLEKIQQPNMDGNSVRIIASMITPPARRK 1002

Query: 1009 TRKGSRIGWVTFSEPAKEYEANF 1031
            T+ G  +  +   +     +   
Sbjct: 1003 TKTGRVLYIINIDDEFDRADCLI 1025


>gi|158520278|ref|YP_001528148.1| DNA polymerase III, alpha subunit [Desulfococcus oleovorans Hxd3]
 gi|158509104|gb|ABW66071.1| DNA polymerase III, alpha subunit [Desulfococcus oleovorans Hxd3]
          Length = 1217

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/1044 (31%), Positives = 527/1044 (50%), Gaps = 44/1044 (4%)

Query: 5    LEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +   P  FVHL VH+ YSLL+G +  ++++ +    + PA+AITD   +F  ++F  +A 
Sbjct: 1    MTTVPDQFVHLHVHTCYSLLDGIIRPDDLVARAVEYKMPAVAITDHGTMFGVIQFYMEAV 60

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AGI+PIIGC+  +  +     T         +  +VLL  T EGY+ L  L +     D
Sbjct: 61   RAGIKPIIGCECYVAPRTIADKTPADHA---GLSHLVLLAETMEGYRNLCRLATIA-QQD 116

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-L 182
                  RI  + LQ+   +GLI L+    G I           A+     +  + GDR  
Sbjct: 117  GFFHKPRIDKALLQK-HAKGLIGLSACLKGEIPHLICRGRQDEADAAARQYCDMLGDRNF 175

Query: 183  YVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++ +Q +   ++    + ++ ++    +PLV TN+  +L  ED  AH++ + +     + 
Sbjct: 176  FLEVQNNGLPEQETVNNALLDMSRRLSIPLVGTNDCHYLDPEDSRAHEIALCLQTGQTIH 235

Query: 242  QKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              DR +  T     K+  EM       P A  NTV IA RC       A   P       
Sbjct: 236  DTDRLKFDTNQLNFKSTGEMCVFLEPFPRAAANTVAIAERCQVAFDFSARHFPVLETPPG 295

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQ-GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                K   + L + A+AGL+ R       +       Y+QRL +EL VI  M   GYFLI
Sbjct: 296  ----KTMADMLEDSAMAGLKKRWQHICKQSSHADKSVYQQRLAYELAVINEMGAPGYFLI 351

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            +ADFI +AK N I  GPGRGS  GS+  Y L IT +DP+   LLFERFLNP+R  MPD D
Sbjct: 352  IADFIAYAKNNGILTGPGRGSAPGSLVCYCLGITGVDPIEHGLLFERFLNPERNVMPDID 411

Query: 420  IDFCQDRRDEVIRYVQNKYGH----ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            +D C + R+++ +Y+ +KY      +  A I T G+++++AALR+VGRAL MP   V+++
Sbjct: 412  VDICINGREKIHQYLMDKYNRDDGEDYAACIATLGTMRSRAALREVGRALIMPLDDVNKV 471

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             KLIP  P       A+  +   R    + P    L+++ +KLEGL  H   +AAGIV+ 
Sbjct: 472  AKLIP--PGARSLDDALKKEPALRALIDSKPEFGELMDVIRKLEGLPFHILMNAAGIVLS 529

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594
            D+PL+   P+YR       +TQ + + +E  GL + D LG++ LT++  +L  +  +   
Sbjct: 530  DKPLTCYTPLYRF--KGEMITQLDARSLETMGLARLDLLGMRDLTVISDTLQLIKNQGRQ 587

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
              DLS I   D  T  LL+   T G+FQL S+GM++ L   +P  + ++  L++LYRPG 
Sbjct: 588  TPDLSRIDTTDAATCQLLSKGDTFGVFQLASTGMKELLVKARPRSLSEVAVLIALYRPGL 647

Query: 655  IDNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            ++N +V +     +  +        ++P+LKET G+ +YQEQ+MQ  Q+L+GY+  ++D 
Sbjct: 648  LENGMVADYLGRKQGLKDTTYPTAKLEPILKETCGLPVYQEQIMQAVQVLAGYTPGQSDD 707

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
             R+AMGK+I E++   ++RFI+GA+  GI K  A+ +FE L  F  YGFNK+H+ AYA I
Sbjct: 708  FRKAMGKRIAEKIADHRQRFINGAAAKGIDKATALQLFEQLEYFGAYGFNKAHSIAYAFI 767

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            ++Q A +K H+P EF+A  + +    V++I +   + R  NI ++PP VN     F V +
Sbjct: 768  AWQMACLKAHFPAEFMAVWLDISFGCVDRIARLIGECRDSNIPVLPPDVNQSARQFTVVN 827

Query: 833  NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKL----NRRVLESLVF 887
             +I   LA +K         I+    A  PF SL DFC+R+ + +     +R+ LE+LV 
Sbjct: 828  GQIRCGLACVKKTDKGLIDAIIAERTAAGPFVSLSDFCNRMSAGRPELLQDRKALENLVK 887

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGA D  G +R Q++  LD I K +  +++ R                    L +    +
Sbjct: 888  AGAFDSTGATRSQMMAVLDEILKPSLDLQQPRK--------------PAVPALPEVGEWS 933

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
              +R   E+R +G   +  P       L++             +G  + +  +  + + K
Sbjct: 934  PHLRRALEKRAMGICLTPAPPAYCHAKLKRPTTTPLCSIYENPQGGRVAVDGIWKAVEYK 993

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANF 1031
            + + G  +      +     E   
Sbjct: 994  QGKDGCPMALAELEDNNAAIEVVI 1017


>gi|34763539|ref|ZP_00144477.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
            vincentii ATCC 49256]
 gi|27886788|gb|EAA23923.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
            vincentii ATCC 49256]
          Length = 1093

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1034 (36%), Positives = 584/1034 (56%), Gaps = 40/1034 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +H+ YSL EG  S+++ L K       ++A+TD  N+F A+EF QKA   GI+PI
Sbjct: 4    FVHLNLHTEYSLSEGVNSIDSFLVKAKELGMSSLAVTDYANMFCAVEFYQKAKKMGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +L I  +D              + S+ LL     GY+ L++L S +Y  ++  + ++
Sbjct: 64   IGLELPISNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELYKKNE-NRELK 111

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRLYVNLQR 188
            I    L+E  ++ LI L+   +G I +A   NSS    +  +  + ++F  +  Y+ +Q 
Sbjct: 112  INKEVLKEY-SQDLIALSSSINGEIGKAILTNSSDEKIDSIINEYIEIFSKENFYLEIQA 170

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                +      +   LA  H+L LVATNN  ++  + YE  D+++ +     V +K+R R
Sbjct: 171  SELSETKIINDRFYDLAKFHDLELVATNNVYYVDRDGYELQDIIICIQSGLKVKEKNRKR 230

Query: 248  VTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                       + +  F      +A+EN   IA  C+  +       P +          
Sbjct: 231  AISKELYLKSKDEMKRFLGEKFEKAIENANHIADLCNVEISFGNLQFPYYEVPSEYSGM- 289

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L+      ++    +         +D   RL++EL+VI +M +SGYF++V DFI 
Sbjct: 290  --DEYLKTICHTNIKKLYKEDL------TKDILDRLEYELSVIIKMGYSGYFIVVWDFIS 341

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD DID C++
Sbjct: 342  YAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDIDIDICRE 401

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+L KL+ +    
Sbjct: 402  RRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLAKLVSHS--- 458

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                + + ++    +    D  + ++++++ ++E   RH STHAAGI+I    L + VP+
Sbjct: 459  QTLEKTLKENVEVAKLYTTDIELQKVIDLAIRIENKVRHVSTHAAGILITKEDLDRTVPI 518

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
            Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + + VDL  IP D
Sbjct: 519  YLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNIDVDLYKIPLD 578

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662
            D + + +L+   + G+FQLES+G+R+ ++ ++PD  EDI+AL++LYRPGP+ + +   + 
Sbjct: 579  DKKVFQMLSLGDSTGVFQLESAGIRKIMKRLKPDKFEDIVALLALYRPGPLQSGMVDDFI 638

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRAMGKK  
Sbjct: 639  NRKNGKEKIEYPHKDLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRAMGKKNF 698

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              M + +E+FI  A KNG +   +  IFEL+ KFA YGFNKSH+ AYA+ISY TA+ K H
Sbjct: 699  AIMRENREKFIERAIKNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWTAYFKVH 758

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP  + AA MT E+     I  +  DA++  I++  P++N+P   F+V +  I YSLAAI
Sbjct: 759  YPAFYYAAVMTSEISETGDIAYYFNDAKEHGIRVYSPNINSPSSYFEVKNEGITYSLAAI 818

Query: 843  KGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +GALD    +R + 
Sbjct: 819  KNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIKGNRKEK 878

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
              S+D +  Y+    K    +  N+F     T  D+  L      +   +   E+  LGF
Sbjct: 879  FLSIDKVLDYSSKASKTDEIQQMNLFGEATKT-IDRFNLAISEDFSLDEKLNKEKEFLGF 937

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y S HPLD +K I+    I    E         ++    + + ++  T+K  ++      
Sbjct: 938  YLSSHPLDRHKDIILAFRINKLSEI-DLEGSQIVKTFGTITNLKKIITKKEEQMAMFNLI 996

Query: 1022 --EPAKEYEANFFP 1033
              +         FP
Sbjct: 997  CYDRT--ISCIAFP 1008


>gi|89255882|ref|YP_513244.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            holarctica LVS]
 gi|115314369|ref|YP_763092.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            holarctica OSU18]
 gi|156501865|ref|YP_001427930.1| DNA polymerase III subunit alpha [Francisella tularensis subsp.
            holarctica FTNF002-00]
 gi|167009646|ref|ZP_02274577.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            holarctica FSC200]
 gi|290953372|ref|ZP_06557993.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            holarctica URFT1]
 gi|295313376|ref|ZP_06803984.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            holarctica URFT1]
 gi|89143713|emb|CAJ78912.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            holarctica LVS]
 gi|115129268|gb|ABI82455.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica
            OSU18]
 gi|156252468|gb|ABU60974.1| DNA polymerase III alpha subunit [Francisella tularensis subsp.
            holarctica FTNF002-00]
          Length = 1159

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1043 (37%), Positives = 584/1043 (55%), Gaps = 45/1043 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131
             +L +D +  +               +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64   VELKVDTEFGI-------------CDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR 190
               WL E+  E +I L GG  G + +A        A++ +    ++FG +   + + +  
Sbjct: 111  PKFWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYIIEIHKLE 170

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248
               +     + ++ A  + L  VATN ++F+  +DY+ H++   +   T +  + R  + 
Sbjct: 171  YENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSKF 230

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP             E+
Sbjct: 231  TKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVNIPAG----LTEK 286

Query: 309  NELRNKAVAGLEVRLAQG-----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                     GL+ RL +      A    +  + Y+ RL  E+++I  M F GYFLIV DF
Sbjct: 287  EYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVEDF 346

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDFC
Sbjct: 347  IRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDFC 406

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
               RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  P
Sbjct: 407  IQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETP 466

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                       +    E   AD  V  ++E +QKLEGL R    HAAGIVI    +S   
Sbjct: 467  GTTFKKILHEGEP-LYEEVQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDFA 525

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD----LS 599
            P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  +  +         ++
Sbjct: 526  PVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDIA 585

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI 
Sbjct: 586  DIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENIP 645

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             + +RK+G+++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMGK
Sbjct: 646  TFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGK 705

Query: 720  KIKEEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K  EEM+KQ++ F    A  + I   +   IF+ +  FA YGFNKSHAAAYA+I+YQTAW
Sbjct: 706  KKPEEMEKQRKIFKEGAAKHHNIDTKLVDEIFDQMEAFAGYGFNKSHAAAYALIAYQTAW 765

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYY 837
            +K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   V    I  
Sbjct: 766  LKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTILL 825

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L AIKG+G    + I+        F S+ D C RVD +K+N++ LE+L +AGA+     
Sbjct: 826  GLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDISK 885

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRFE 953
            +R     S++   K A +V +      +++F   +        LE+       N      
Sbjct: 886  NRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELLI 945

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAA-MVVSKQQKK 1008
            NE++ LG YFSGH +D  +   R      + +        + GN++R+ A M+    ++K
Sbjct: 946  NEKKALGMYFSGHIIDE-ESHWRNH--VSFSDLEKIQQPNMDGNSVRIIASMITPPARRK 1002

Query: 1009 TRKGSRIGWVTFSEPAKEYEANF 1031
            T+ G  +  +   +     +   
Sbjct: 1003 TKTGRVLYIINIDDEFDRADCLI 1025


>gi|33519751|ref|NP_878583.1| DNA polymerase III, alpha chain [Candidatus Blochmannia floridanus]
 gi|33504096|emb|CAD83357.1| DNA polymerase III, alpha chain [Candidatus Blochmannia floridanus]
          Length = 1166

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/1053 (38%), Positives = 611/1053 (58%), Gaps = 45/1053 (4%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P+FVHL V S YS+++G    N +L+K  +   PA+A+TD +NLF  ++F   +C  GI
Sbjct: 2    NPNFVHLHVRSDYSMIDGLSKTNALLEKAVSLNMPALALTDFSNLFGFIKFYDYSCKLGI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G    I                     +  LV   +GYQ L+EL+SR Y       
Sbjct: 62   KPIAGADFLIQDISCYS---------DNWSKLTCLVLNNQGYQHLVELISRAYKYKSNTN 112

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I  SWL E   EGLI+L+GG  G I +    N     EK LL + K F +R Y+ L 
Sbjct: 113  YPIIQRSWLMEY-NEGLILLSGGCDGDIGKYLLRNKRNDIEKTLLFYHKYFPNRYYIELI 171

Query: 188  RHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR- 245
            R    ++       V+L+    LP+VATN+  F+ ++D++AH++ +A+    VV++  + 
Sbjct: 172  RTGRVHEESYLKLAVELSRIKGLPVVATNDVRFVEKKDFQAHEIRVAIHAGVVVNKIQQS 231

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + +   ++K+  EM  +F+D+PE+L NTVEIA+RC+F++             +      
Sbjct: 232  NKYSAQQFMKSSQEMCHLFNDIPESLVNTVEIAQRCNFMINF-----KGPFLPKFPTGSL 286

Query: 306  EEENELRNKAVAGLE---VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              EN L  +A  GLE     L   +  +      Y  RL+ EL VI +M F GYFLIV +
Sbjct: 287  STENFLVTQARLGLEKRLKFLFPNSKERQVKRSVYDIRLNQELQVINQMGFPGYFLIVME 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FIQW+K NNIPVGPGRGSGA S+ AY L IT++DP++F LLFERFLNP+R+SMPD DIDF
Sbjct: 347  FIQWSKDNNIPVGPGRGSGASSLVAYVLRITELDPIKFDLLFERFLNPERISMPDLDIDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            C + RD VI +V   YG   V+QIITFG++ AKAA+RDVGRAL  PY  V+RL KLIP +
Sbjct: 407  CMEHRDLVIDHVAQMYGSHAVSQIITFGTMAAKAAIRDVGRALGYPYVFVNRLAKLIPLE 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P   +       + + +     D  V  L+++S +LEG+ R+ S HA G+VI    ++  
Sbjct: 467  PGMTLRKACTTIN-QLKLMYNTDEEVKILIDLSYQLEGIIRNVSKHAGGVVIAPNKITDF 525

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----KVD 597
             P+Y D   +  +TQF+   IE+ GLIKFDFLGL+TLT + +++  +  R         +
Sbjct: 526  SPLYYDDNYNHSMTQFDKDDIERIGLIKFDFLGLRTLTTVNRAIKMINDRKSKSNSLICN 585

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++LIP +D  ++ LL T  T GIFQLES G++  ++ ++PD  ED+IAL++L+RPGP+ +
Sbjct: 586  INLIPLNDRNSFRLLQTAKTTGIFQLESKGIKMLIKRLKPDHFEDLIALIALFRPGPLQS 645

Query: 658  IVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             +V N               +   H L+ P+LK T G+I+YQEQVMQIAQ+L+GY+L +A
Sbjct: 646  GMVDNFINRKNGREIISYPDVKWEHELLKPVLKSTYGIILYQEQVMQIAQVLAGYTLGKA 705

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRA+GKK  E+M KQ+  F +GA +NGI++T++  IF+L+ KFA YGFNKSH+AAYA
Sbjct: 706  DILRRAIGKKKYEDMVKQRAIFNAGAQRNGINQTLSKKIFDLMEKFAGYGFNKSHSAAYA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +ISYQT W+K HYP EF+A+ ++ +MDNV +I     + R+  ++++ P++N+    F V
Sbjct: 766  LISYQTLWLKAHYPAEFMASILSSDMDNVNRIIILIHECRRMGLKVLSPNINSSRYFFYV 825

Query: 831  GDN-RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             +N  I Y + AIKG+G  +   I+ +   D  F SL DFC RVD+ K+N+R++E L+++
Sbjct: 826  NNNQEIVYGIGAIKGIGKLSIDSIVASRDCDGEFHSLFDFCVRVDNSKVNQRIIEKLIYS 885

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV--- 945
            GA D FG  R +L+ SL+     A    K +  +   IF  +    +   T+ K +    
Sbjct: 886  GAFDFFGIHRSELISSLNVTICQAIQYAKRKQCQQIGIFEDDIQEHTIVDTIPKCNSVIK 945

Query: 946  --ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR----GNNIRLAA 999
              +NS +    E+  LG Y + HP++ Y   +++  I    +    +R     N +    
Sbjct: 946  LHQNSLIILTKEKEALGLYLTDHPVNQYMNEVKQY-IPEISKIQNVLRKIVINNTVCTFG 1004

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++ S   K T+KG+ + +    +   + E   F
Sbjct: 1005 LLSSIHIKSTKKGNYMLFGILEDQYSQLEIIVF 1037


>gi|78188863|ref|YP_379201.1| DNA polymerase III, alpha subunit [Chlorobium chlorochromatii CaD3]
 gi|78171062|gb|ABB28158.1| DNA polymerase III, alpha subunit [Chlorobium chlorochromatii CaD3]
          Length = 1189

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1072 (34%), Positives = 572/1072 (53%), Gaps = 62/1072 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F+HL  H+ YS+    +  + +     A   P IA+TD   +F+  E   +A   GI+ 
Sbjct: 2    DFIHLHTHTHYSMQSSPIFPSELFKAAKAFGMPTIAVTDYGAMFNMPELFSEAKQVGIRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ +   D  + +    +     PS+VLLV    GY+ L  L+SR           
Sbjct: 62   IIGSEVLLLEHDEHQTSRHTVS-----PSLVLLVKNETGYRNLCILLSRASREGFVNGMP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L++   +GL+ L+   +G I RA    S   A      ++++FG   Y+ LQRH
Sbjct: 117  HVESRLLEQYH-DGLLCLSAYGAGRIGRALMAGSLDEAANFSAYYQEIFGSNFYLELQRH 175

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
               +D     Q++ LA    + LVATNN  +L + D   +  L+A      +S       
Sbjct: 176  NTSFDALLNEQIIGLAQKFSIELVATNNVHYLRQNDAGCYRALVANRTKEKLSGPVSAAL 235

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               +HYLK+  EM  +FS+    LENT+ IA +C+F      P LPRF      D   +E
Sbjct: 236  PGSEHYLKSAEEMQQLFSNEYGELENTLRIAEQCTFTFSDKEPALPRFPLP---DGFSDE 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR+    G   + A+ +  +G   ++ ++R++ EL VI +M FS YFLIV+D I  +
Sbjct: 293  ASYLRHLTWEGAAEKYAK-SEEEGISQEEVKERIELELGVIEKMGFSSYFLIVSDLIAAS 351

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++    VGPGRGS AGS+ AY   IT +DPLR+ LLFERFLNP+R+SMPD DIDF    +
Sbjct: 352  RRMGYSVGPGRGSAAGSIVAYLTGITRVDPLRYKLLFERFLNPERLSMPDIDIDFTPVGK 411

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +V+ Y   KYG + VA++I  G+L AKAA+RD GR L++P   VD+L KL+P  P   +
Sbjct: 412  QKVLEYTVEKYGADSVAKVIAIGTLGAKAAIRDAGRVLEVPLPLVDKLAKLVPTKPGITL 471

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+ D    RE   + P +  L++ ++ +EG  R+ S HA  +VI D  L + VP+Y 
Sbjct: 472  E-KALTDSRDLREMAESTPELKTLMQYARSMEGRARNVSMHAGAVVITDGALEEQVPLYV 530

Query: 548  -----------------------------DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                                                VTQF+  WIE AGL+K D+LGL+T
Sbjct: 531  SNKIETEERRFADELDLDQPDNGKAKAGESNDEKQVVTQFDKNWIETAGLLKIDYLGLET 590

Query: 579  LTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            L ++ ++L  + +R    +DL  +P  D +T+ +       GIFQ ESSGM+  +  +QP
Sbjct: 591  LAVIDETLRMIKRRHGLDIDLEKVPMTDRKTFRIFQEGKMAGIFQFESSGMQSYMTRLQP 650

Query: 638  DCIEDIIALVSLYRPGPIDNIVV--------YNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
              I DIIA+ +LYRPG ++  V         + +RK+G+E I  +HP+++ +LKET GVI
Sbjct: 651  TQIGDIIAMSALYRPGALNARVDEHRNAVDLFVDRKHGREAIDYMHPMLEGILKETYGVI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI+Q++ G+S+++AD LR+AMGKK  E M+K K  FI+G    G+  T+A  +
Sbjct: 711  VYQEQVMQISQVMGGFSMAKADNLRKAMGKKKPEIMEKFKADFIAGGVAQGVHDTLATRV 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            F+L+++FA YGFNKSH+AAY V++Y T ++K HY +EF+ A +  E+ + E++K    +A
Sbjct: 771  FDLMSEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFVTAVLNSEIGDTERMKHLTDEA 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGD-----NRIYYSLAAIKGVGTTTARHIM--EASADKPF 862
            + F I  +PPS+N     F V +     + I   L+AIK VG   AR I+       + F
Sbjct: 831  KSFGIATLPPSINKSDALFSVENSSNGRSAIRVGLSAIKQVG-GAARAIVTSRMRRKRDF 889

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             ++ D  + VD + +NR+ LE L+ AGA D F   R +LL ++D   K+ Q   +  T  
Sbjct: 890  LNIFDLTASVDLRVMNRKALECLILAGACDDFDPHRARLLANIDKAIKFGQMQNRTVTMG 949

Query: 923  HENIFAHEKGTFSD--KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                F++E+G   D     L+   +     +  +E++++GFY S HPL  Y+   +    
Sbjct: 950  QCGFFSNEEGQEGDIHYPELDNADMMPDGEKLLHEKKLVGFYLSRHPLSAYRRDWQAFAN 1009

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     ++    ++  +VVS +  + +KG ++ +    +   + +   F
Sbjct: 1010 LPLNT-KEIVKNKQYKVIGVVVSLKPYQDKKGKQMLFGAIEDFTGKADFTIF 1060


>gi|254304372|ref|ZP_04971730.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
            nucleatum subsp. polymorphum ATCC 10953]
 gi|148324564|gb|EDK89814.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
            nucleatum subsp. polymorphum ATCC 10953]
          Length = 1133

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1040 (36%), Positives = 587/1040 (56%), Gaps = 42/1040 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +E +  FVHL +H+ YSL EG  S+++ L K       ++A+TD  N+F A+EF QKA  
Sbjct: 1    MENN--FVHLNLHTEYSLSEGVNSIDSFLVKAKELGMTSLAVTDYANMFCAIEFYQKAKK 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG +L I  +D              + S+ LL     GY+ L++L S +Y  + 
Sbjct: 59   MGIKPIIGLELPISNRDE-----------QNIFSLTLLAKNYNGYKNLVKLASELY-KNN 106

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLF-GDRL 182
              + +++    L+E  ++ LI L+   +G I +A   NSS     K +  + ++F  +  
Sbjct: 107  ENRELKLNKEILKE-HSQDLIALSSSMNGEIGKAILTNSSDEKVNKIIDEYIEIFSKENF 165

Query: 183  YVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ +Q +   +      +   LA  H+L LVATNN  ++  + YE  D+++ +     V 
Sbjct: 166  YLEIQANELSETKIINDRFYDLAKFHDLELVATNNVYYVDRDGYELQDIIICIQSGLKVK 225

Query: 242  QKDRPRVTPDHYLKNRSEMVSIF--SDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +K+R R           + +  F      +A+EN   IA  C+  +       P +    
Sbjct: 226  EKNRKRAISKELYLKSKDEMKRFLGEKFEKAIENANYIADLCNVEIGFGNLQFPYYEVPS 285

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                    +  L+      ++    +         +D   RL++EL+VI +M +SGYF++
Sbjct: 286  EYSGM---DEYLKTICHTNIKKLYKEDL------TKDILDRLEYELSVIIKMGYSGYFIV 336

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V DFI +AK+  IPVGPGRGS AGS+ AY L IT IDP+R++LLFERFLNP+R+SMPD D
Sbjct: 337  VWDFISYAKRRGIPVGPGRGSAAGSLVAYCLGITMIDPIRYNLLFERFLNPERISMPDID 396

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ID C++RRDE+I YV +KYG +RVA IITFG ++A+AA+RD+GR L +   ++D+L KL+
Sbjct: 397  IDICRERRDELIDYVVHKYGRDRVAHIITFGRMKARAAIRDIGRVLDIDLKKIDKLSKLV 456

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                A   +   + ++    +    D  + ++++++ ++E   RH STHAAGI+I    L
Sbjct: 457  SPFQALEKT---LKENVEVAKLYTTDIELQKVIDLAIRIENTVRHVSTHAAGILITKEDL 513

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
             + VP+Y D +  +  TQ+ MK +E+ GL+K DFLGLK L+ +Q+++D++ + + V +DL
Sbjct: 514  DKTVPIYLDEKEGVIATQYQMKELEELGLLKIDFLGLKNLSNIQRTIDYIKKYKNVDIDL 573

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD + +H+L+   + G+FQLES G+R+ ++ ++PD  EDI+AL++LYRPGP+ + 
Sbjct: 574  YKIPLDDKKVFHMLSLGDSTGVFQLESPGIRKIMKRLKPDKFEDIVALLALYRPGPLQSG 633

Query: 659  V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +   + NRKNGKEKI   H  ++ +LKET GVI+YQEQVM+IA  ++ YSL EAD+LRRA
Sbjct: 634  MVDDFINRKNGKEKIEYPHKNLEIILKETYGVILYQEQVMKIASYMADYSLGEADLLRRA 693

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK    M + +E+FI  A  NG +   +  IFEL+ KFA YGFNKSH+ AYA+ISY T
Sbjct: 694  MGKKNFAIMRENREKFIERAIHNGYTVEKSEEIFELIDKFAGYGFNKSHSVAYAMISYWT 753

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A+ K +YP  + AA MT E+     I  +  DA++  +++  P+VN+P   F+V +  I 
Sbjct: 754  AYFKAYYPAFYYAAVMTSEISETGDIAYYFNDAKEHGVRVYSPNVNSPSAYFEVKNEGIT 813

Query: 837  YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
            YSLAAIK  G T A+ I+E    +  + +LE+F  R     +N+R LE+L+ +GALD   
Sbjct: 814  YSLAAIKNFGLTMAKKIVEDVKLNGKYTTLEEFVFRNKKNGMNKRALEALILSGALDEIK 873

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R +   S+D +  Y+    K    +  N+F     T  DK  L          +   E
Sbjct: 874  GNRKEKFLSIDKVLDYSSKAPKTDEIQQMNLFGAAAKT-IDKFNLAISEDFTLDEKLNKE 932

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
            Q  LGFY S HPLD YK IL    IK   E         I+    + + ++  T+K  ++
Sbjct: 933  QEFLGFYLSSHPLDRYKDILTTFSIKKLSEF-DLEGNQVIKTFGTITNLKKTITKKEEQM 991

Query: 1016 GWVTFS--EPAKEYEANFFP 1033
                 S  +         FP
Sbjct: 992  AMFNLSCYDRT--ISCIAFP 1009


>gi|138896305|ref|YP_001126758.1| DNA polymerase III subunit alpha [Geobacillus thermodenitrificans
            NG80-2]
 gi|134267818|gb|ABO68013.1| DNA polymerase III alpha subunit [Geobacillus thermodenitrificans
            NG80-2]
          Length = 1095

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1032 (35%), Positives = 571/1032 (55%), Gaps = 53/1032 (5%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +     FVHL V S YSL +   ++  ++ K       A+A+TD   L+ A+ F ++  
Sbjct: 2    AMT----FVHLHVLSGYSLFQSTATVEALVAKAKQLGYRALALTDHQVLYGAIPFYRECQ 57

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
              G++PIIG   D+ +                   +VLL +  EGY+ LIE+ + + + +
Sbjct: 58   RHGLRPIIGMMADVVLD-----------GDSGAFPLVLLAANEEGYRHLIEISTAVQMRE 106

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            +      +  + L+ + + G+I +T G +G ++          A++ LL +++LF  RLY
Sbjct: 107  EK----HVHEAALRRL-SGGIIAITPGLNGRVESFLAAGEVAQAKETLLRYRQLFAGRLY 161

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            + +QR        ES +++LA    +P+VATN   ++  ED  A   L A+     ++  
Sbjct: 162  IAIQRGERTRAPYESALLRLAEETGVPVVATNEVRYVEREDALAWRCLQAIGDGVPLAHI 221

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                   + YL    EM   F+DLPEALEN++ IA +C   ++     LP+F   + +  
Sbjct: 222  P---EEDERYLAALDEMARRFADLPEALENSMNIANQCELHIEFGHWRLPKFPVPDGE-- 276

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                ++ LR     GL  R+             YR+RL+ EL++I  M+FS YFLIVAD 
Sbjct: 277  --TADSYLRRLCEQGLARRVP-------SADARYRERLEHELHIIQTMRFSDYFLIVADV 327

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +A++  I  GPGRGS AGS+ AYAL+ITD+DP+ + LLFERFLNP+R+S+PD D+DF 
Sbjct: 328  LAYARQRGILTGPGRGSAAGSLVAYALSITDVDPIEYGLLFERFLNPERVSVPDIDLDFP 387

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRR+EVIRYV   YG + VAQIITFG+  AKAALR+  + L +   + +R+  L+PN  
Sbjct: 388  DDRREEVIRYVVETYGRDHVAQIITFGTFGAKAALRETAKVLGVSGREAERVMALLPNKQ 447

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +S     + + FR A  A P  +R L I++KLEGL RH S HAAG++I   PL + V
Sbjct: 448  GVTISQWH-RESAAFRRALRALPDGERWLTIAKKLEGLPRHTSIHAAGVIISPDPLMRHV 506

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIP 602
            P+      + P+TQ+ M  +E  GL+K DFLGL+TLTLL + +     Q G   D+  +P
Sbjct: 507  PLQ-PSHGEWPLTQYAMGALEALGLLKIDFLGLRTLTLLGQMVRLIERQTGKPFDVRALP 565

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD +TY LL+   T G+FQLESSGM++ L  ++P  +E+I+A+ +LYRPGP++ I  Y 
Sbjct: 566  LDDEKTYALLSAGDTSGVFQLESSGMKRVLAELRPATLEEIVAVNALYRPGPMNMIPTYI 625

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RK G+E I  +HP ++P+L  T GV+IYQEQ+MQIA  ++G+SL +ADVLRRA+ KK K
Sbjct: 626  RRKRGEEAISYLHPDLEPILAPTYGVLIYQEQIMQIAARIAGFSLGKADVLRRAVAKKEK 685

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              + + +E F++G   NG    +A  ++  + +FADYGFN+SHA +Y ++SY  A++K H
Sbjct: 686  ALLAEHREAFVAGCVANGYPAPMAEELYRQIVRFADYGFNRSHAVSYTLLSYALAYIKAH 745

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP+ F A  ++    + EK+  +  +A +  I ++PPSVN     F V    I   LA +
Sbjct: 746  YPLCFYAVMLSNASGDREKMVLYSYEAARKGIALLPPSVNRSGYRFAVEGEAIRAGLATV 805

Query: 843  KGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K VG + A+ I++    + PF    DF  R+  K L R  LE+L+ AGA D  G  R  L
Sbjct: 806  KHVG-SAAKLIIDERKENGPFADFFDFAVRLLPKGLARSALEALISAGAFDELGEERGSL 864

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L S++   ++ Q +         ++          K         + + R + E+ +LGF
Sbjct: 865  LASIEIAIEHVQLMRPYLEAGGLSL----------KPKYADAPPLSPAERRQREKELLGF 914

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
              + HP  V +P+ + +      E      G+ + +   +   ++ +T+ G  + ++T S
Sbjct: 915  AVTPHPAAVCRPLFQAVRAVPAAEV----HGSPVVVGGCIAELRKTRTKFGEEMAFITVS 970

Query: 1022 EPAKEYEANFFP 1033
            + + E EA  FP
Sbjct: 971  DESGELEAVAFP 982


>gi|196249927|ref|ZP_03148622.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
 gi|196210441|gb|EDY05205.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
          Length = 1093

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/1026 (35%), Positives = 570/1026 (55%), Gaps = 49/1026 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL V S YSL +   ++  ++ K       A+A+TD   L+ A+ F ++    G++P
Sbjct: 2    TFVHLHVLSGYSLFQSTATVEALVAKAKQLGYRALALTDHQVLYGAIPFYRECQRHGLRP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG   D+ +                   +VLL +  EGY+ LIE+ + + + ++     
Sbjct: 62   IIGMMADVVLD-----------GDSGAFPLVLLAANEEGYRHLIEISTAVQMREEK---- 106

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +  + L+ + + G+I +T G +G ++          A++ LL +++LF  RLY+ +QR 
Sbjct: 107  HVHEAALRRL-SGGIIAITPGLNGRVESFLAAGEVAQAKETLLRYRQLFAGRLYIAIQRG 165

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                   ES +++LA    +P+VATN   ++  ED  A   L A+     ++        
Sbjct: 166  ERTRAPYESALLRLAEETGVPVVATNEVRYVEREDALAWRCLQAIGDGVPLAHIP---EE 222

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + YL    EM   F+DLPEALEN++ IA +C   ++     LP+F   + +      ++
Sbjct: 223  DERYLAALDEMARRFADLPEALENSMNIANQCELHIEFGHWRLPKFPVPDGE----TADS 278

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR     GL  R+             YR+RL+ EL++I  M+FS YFLIVAD + +A++
Sbjct: 279  YLRRLCEQGLARRVP-------SADARYRERLEHELHIIQTMRFSDYFLIVADVLAYARQ 331

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS AGS+ AYAL+ITD+DP+ + LLFERFLNP+R+S+PD D+DF  DRR+E
Sbjct: 332  RGILTGPGRGSAAGSLVAYALSITDVDPIEYGLLFERFLNPERVSVPDIDLDFPDDRREE 391

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VIRYV   YG + VAQIITFG+  AKAALR+  + L +   + +R+  L+PN     +S 
Sbjct: 392  VIRYVVETYGRDHVAQIITFGTFGAKAALRETAKVLGVSGREAERVMALLPNKQGVTISQ 451

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                + + FR A  A P  +R L I++KLEGL RH S HAAG++I   PL + VP+    
Sbjct: 452  WH-RESAAFRRALRALPDGERWLTIAKKLEGLPRHTSIHAAGVIISPDPLMRHVPLQ-PS 509

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHET 608
              + P+TQ+ M  +E  GL+K DFLGL+TLTLL + +     Q G   D+  +P DD +T
Sbjct: 510  HGEWPLTQYAMGALEALGLLKIDFLGLRTLTLLGQMVRLIERQTGKPFDVRALPLDDEKT 569

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            Y LL+   T G+FQLESSGM++ L  ++P  +E+I+A+ +LYRPGP++ I  Y  RK G+
Sbjct: 570  YALLSAGDTSGVFQLESSGMKRVLAELRPATLEEIVAVNALYRPGPMNMIPTYIRRKRGE 629

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E I  +HP ++P+L  T GV+IYQEQ+MQIA  ++G+SL +ADVLRRA+ KK K  + + 
Sbjct: 630  EAISYLHPDLEPILAPTYGVLIYQEQIMQIAARIAGFSLGKADVLRRAVAKKEKALLAEH 689

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E F++G   NG    +A  ++  + +FADYGFN+SHA +Y ++SY  A++K HYP+ F 
Sbjct: 690  REAFVAGCVANGYPAPMAEELYRQIVRFADYGFNRSHAVSYTLLSYALAYIKAHYPLCFY 749

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            A  ++    + EK+  +  +A +  I ++PPSVN     F V    I   LA +K VG +
Sbjct: 750  AVMLSNASGDREKMVLYSYEAARKGIALLPPSVNRSGYRFAVEGEAIRAGLATVKHVG-S 808

Query: 849  TARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             A+ I++    + PF    DF  R+  K L R  LE+L+ AGA D  G  R  LL S++ 
Sbjct: 809  AAKLIIDERKENGPFADFFDFAVRLLPKGLARSALEALISAGAFDELGEERGSLLASIEI 868

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              ++ Q +         ++          K         +   R + E+ +LGF  + HP
Sbjct: 869  AIEHVQLMRPYLEAGGLSL----------KPKYADAPPLSPDERRQREKELLGFAVTPHP 918

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
              V +P+ + +      E      G+ + +   +   ++ +T+ G  + ++T S+ + E 
Sbjct: 919  AAVCRPLFQAVRAVPAAEV----HGSPVVVGGCIAELRKTRTKFGEEMAFITVSDESGEL 974

Query: 1028 EANFFP 1033
            EA  FP
Sbjct: 975  EAVAFP 980


>gi|149181134|ref|ZP_01859634.1| DNA polymerase III subunit alpha [Bacillus sp. SG-1]
 gi|148851221|gb|EDL65371.1| DNA polymerase III subunit alpha [Bacillus sp. SG-1]
          Length = 1081

 Score =  656 bits (1692), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/995 (37%), Positives = 574/995 (57%), Gaps = 41/995 (4%)

Query: 44   IAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
            +AITD N ++  + F Q+     I+PIIG   D+  +                  +VLL 
Sbjct: 1    MAITDRNVMYGVIPFYQECRKNNIKPIIGMTADVMSE-----------REERSFPLVLLA 49

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
                GYQ L+++ S +           I   WL+  G EGLI +T G  G I++      
Sbjct: 50   KNNAGYQNLLKISSVIGTKSPEG----IPYKWLKGYG-EGLIGITPGGKGEIEQHLLAGD 104

Query: 164  SQVAEKRLLTFKKLFGD-RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLS 221
               AE  +   +++FG+   +++LQ H    DR  E  + +L     +  V TN+  F+ 
Sbjct: 105  INQAEDVVHRMQQVFGEESFFLSLQNHGLEDDRKIEDGIEKLKQKLSIRQVVTNDVQFVE 164

Query: 222  EEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            +ED  AH+ L+A+     +            +Y K+R EM+ +F    +ALENT+++A +
Sbjct: 165  KEDAFAHECLLAIRDGVKLADDDREILPNDQYYFKSRDEMLDLFGSHVDALENTMKVANQ 224

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
            C+  +  +  +LP++     +    E +  L    + GL+ R  +          DY  R
Sbjct: 225  CNVEIAFNQNLLPKYPLPAGE----EADQYLHGVCMQGLKERGLENIP-------DYLDR 273

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            L++EL VI +M FS YFLIV DF+++AK  +I  GPGRGS AGS+ AYAL ITD+DP++ 
Sbjct: 274  LEYELTVIQKMNFSDYFLIVWDFMKYAKDQHILTGPGRGSAAGSLVAYALRITDVDPIKH 333

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFLNP+R+SMPD DIDF   RR+EVI YV  KYG   VAQIITFG+L AKAALRD
Sbjct: 334  GLLFERFLNPERISMPDIDIDFPDYRREEVIEYVHKKYGDLHVAQIITFGTLAAKAALRD 393

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
              R       ++++L K IP+ P          + + FR          RL + + KLEG
Sbjct: 394  TARVFGFNSKELEQLSKFIPSRPGS--LKSVYDESADFRNFINESQHKQRLFQTALKLEG 451

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L RHASTHAAG++I +RPL  L+P+    + ++ +TQ+ M+ +E+ GL+K DFLGL+ LT
Sbjct: 452  LPRHASTHAAGVIISERPLVDLIPIQ-AGQGNVHLTQYPMEILEEIGLLKMDFLGLRNLT 510

Query: 581  LLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            +L + +  + +  G ++ L  +P +D +T+ LL+   T G+FQLES GM+  L  ++P+ 
Sbjct: 511  ILDRIVASIRKGTGKRLSLDDLPQNDEKTFDLLSQGRTDGVFQLESDGMKNVLVKLRPNS 570

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
             EDI+A+ +L+RPGP++NI ++ +RK+G+E I   HP +  +L  T GVI+YQEQ+MQIA
Sbjct: 571  FEDIVAVNALFRPGPMENIPLFISRKHGEETIEYPHPDLKEILGVTYGVIVYQEQIMQIA 630

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
              ++G+SL EAD+LRRA+ KK +E +D +++ FI GA   G S   A  I++L+ +FA+Y
Sbjct: 631  SKMAGFSLGEADLLRRAVSKKKREVLDSERKHFIDGALNKGYSFETAQEIYDLIVRFANY 690

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFN+SHA AY++I+YQ A++K +YP  FLAA +T  + N  K+ ++ ++A+Q +I I+PP
Sbjct: 691  GFNRSHAVAYSMIAYQLAYLKANYPSYFLAALLTSVIGNDTKVSQYIREAKQNDINILPP 750

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            S+N     FKV    I YSL A++GVG    + I +   +KPF  L DFC RV  K +NR
Sbjct: 751  SINLSQFPFKVEKGGIRYSLGAVRGVGAAALKEIYQERQEKPFVDLFDFCLRVSLKAVNR 810

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE-NIFAHEKGTFSDKI 938
            + LE+LVF+GALD FG  R  LL SLD   ++++ V   R    + ++F  E+  F  K 
Sbjct: 811  KTLEALVFSGALDDFGVDRSTLLASLDVALEHSELV---RPQDQDYDLFQEEEAFFL-KP 866

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
               +        + E E++VLG Y S HP+  ++ + + +      +  A     NIR+ 
Sbjct: 867  KYTEVEDMPLEKKLEYEKQVLGLYLSDHPVSPFESLFKNVSAIDLFDLEAG--NKNIRVG 924

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + + +  +T+KG  + ++T S+ + E E   FP
Sbjct: 925  VYLTAVKTIRTKKGEVMAFITMSDSSGEMEGVIFP 959


>gi|254368720|ref|ZP_04984733.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica
            FSC022]
 gi|157121641|gb|EDO65811.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica
            FSC022]
          Length = 1159

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/1043 (37%), Positives = 583/1043 (55%), Gaps = 45/1043 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131
             +L +D +  +               +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64   VELKVDTEFGI-------------CDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR 190
               WL E+  E +I L GG  G + +A        A++ +    ++FG +   + + +  
Sbjct: 111  PKFWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYIIEIHKLE 170

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248
               +     + ++ A  + L  VATN ++F+  +DY+ H++   +   T +  + R  + 
Sbjct: 171  YENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSKF 230

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP             E+
Sbjct: 231  TKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVNIPAG----LTEK 286

Query: 309  NELRNKAVAGLEVRLAQG-----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                     GL+ RL +      A    +  + Y+ RL  E+++I  M F GYFLIV DF
Sbjct: 287  EYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVEDF 346

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDFC
Sbjct: 347  IRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDFC 406

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
               RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  P
Sbjct: 407  IQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETP 466

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                       +    E   AD  V  ++E +QKLEGL R    HAAGIVI    +S   
Sbjct: 467  GTTFKKILHEGEP-LYEEVQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDFA 525

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD----LS 599
            P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  +  +         ++
Sbjct: 526  PVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDIA 585

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI 
Sbjct: 586  DIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENIP 645

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             + +RK+G+++I  +HPL+  +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMGK
Sbjct: 646  TFIDRKHGRKQITYLHPLLKGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGK 705

Query: 720  KIKEEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K  EEM+KQ++ F    A  + I   +   IF+ +  FA YGFNKSHAAAYA+I+YQTAW
Sbjct: 706  KKPEEMEKQRKIFKEGAAKHHNIDTKLVDEIFDQMEAFAGYGFNKSHAAAYALIAYQTAW 765

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYY 837
            +K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   V    I  
Sbjct: 766  LKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGMILL 825

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L AIKG+G    + I+        F S+ D C RVD +K+N++ LE+L +AGA+     
Sbjct: 826  GLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDISK 885

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRFE 953
            +R     S++   K A +V +      +++F   +        LE+       N      
Sbjct: 886  NRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELLI 945

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAA-MVVSKQQKK 1008
            NE++ LG YFSGH +D  +   R      + +        + GN++R+ A M+    ++K
Sbjct: 946  NEKKALGMYFSGHIIDE-ESHWRNH--VSFSDLEKIQQPNMDGNSVRIIASMITPPARRK 1002

Query: 1009 TRKGSRIGWVTFSEPAKEYEANF 1031
            T+ G  +  +   +     +   
Sbjct: 1003 TKTGRVLYIINIDDEFDRADCLI 1025


>gi|187931355|ref|YP_001891339.1| DNA polymerase III subunit alpha [Francisella tularensis subsp.
            mediasiatica FSC147]
 gi|187712264|gb|ACD30561.1| DNA polymerase III subunit alpha [Francisella tularensis subsp.
            mediasiatica FSC147]
          Length = 1159

 Score =  656 bits (1691), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1043 (37%), Positives = 584/1043 (55%), Gaps = 45/1043 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131
             +L +D +  +               +VLL    +GYQ ++ LVS+ Y   D+      I
Sbjct: 64   VELKVDTEFGI-------------CDLVLLAENNQGYQNIVNLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR 190
              SWL E+  E +I L GG  G + +A        A++ +    ++FG +   + + +  
Sbjct: 111  PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYIIEIHKLE 170

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248
               +     + ++ A  + L  VATN ++F+  +DY+ H++   +   T +  + R  + 
Sbjct: 171  YENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSKF 230

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP             E+
Sbjct: 231  TKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVNIPAG----LTEK 286

Query: 309  NELRNKAVAGLEVRLAQG-----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                     GL+ RL +      A    +  + Y+ RL  E+++I  M F GYFLIV DF
Sbjct: 287  EYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVEDF 346

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+W+K+N+I VGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDFC
Sbjct: 347  IRWSKENDISVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDFC 406

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
               RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  P
Sbjct: 407  IQSRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETP 466

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                       +    E   AD  V  ++E +QKLEGL R    HAAGIVI    +S   
Sbjct: 467  GTTFKKILHEGEP-LYEEVQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDFA 525

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD----LS 599
            P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  +  +         ++
Sbjct: 526  PVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDIA 585

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI 
Sbjct: 586  DIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENIP 645

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             + +RK+G+++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMGK
Sbjct: 646  TFIDRKHGRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGK 705

Query: 720  KIKEEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K  EEM+KQ++ F    A  + I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTAW
Sbjct: 706  KKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAW 765

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYY 837
            +K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   V    I  
Sbjct: 766  LKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAVSKGTILL 825

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L AIKG+G    + I+        F S+ D C RVD +K+N++ LE+L +AGA+     
Sbjct: 826  GLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDISK 885

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRFE 953
            +R     S++   K A +V +      +++F   +        LE+       N      
Sbjct: 886  NRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLKELLI 945

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAA-MVVSKQQKK 1008
            NE++ LG YFSGH +D  +   R      + +        + GN++R+ A M+    ++K
Sbjct: 946  NEKKALGMYFSGHIIDE-ESHWRNH--VSFSDLEKIQQPNMDGNSVRIIASMITPPARRK 1002

Query: 1009 TRKGSRIGWVTFSEPAKEYEANF 1031
            T+ G  +  +   +     +   
Sbjct: 1003 TKTGRVLYIINIDDEFDRADCLI 1025


>gi|308177849|ref|YP_003917255.1| DNA polymerase III subunit alpha [Arthrobacter arilaitensis Re117]
 gi|307745312|emb|CBT76284.1| DNA polymerase III subunit alpha [Arthrobacter arilaitensis Re117]
          Length = 1169

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/1052 (32%), Positives = 531/1052 (50%), Gaps = 48/1052 (4%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +L+GA  L  +  +       A+AITD   LF A +F ++A  AG++PIIG +  +    
Sbjct: 1    MLDGAARLGELFAEANRQDMKALAITDHGYLFGAFDFWRQATGAGVKPIIGVEAYVTPGT 60

Query: 82   NLKMTNQGKTPFPT------------VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
                  + K                    + LL    +G   L +  SR  L     +  
Sbjct: 61   ARDDKTRVKWRTDESQKGDDVSGGGLYNHMTLLSYNNKGMDNLFKGSSRASLDSVFGKYP 120

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            R     L E   EG+I  TG  SG +           A+      + LFG +  +  +  
Sbjct: 121  RWDRELLNE-HHEGIIATTGCPSGEVQTKLRLGQYDAAKAAAAELQDLFGKENYFCEIMD 179

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +R     +++LA   ++PLVATN+  +  E D +AH+ L+A+   + + +    +
Sbjct: 180  HGLEIERRITKDLLRLAKELDIPLVATNDLHYTHESDAKAHEALLAINSGSTLDEPTYDQ 239

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC---SFILQVHAPILPRFIEKECDDIQ 304
                         +    ++ E  +   E        +  ++V       ++ K      
Sbjct: 240  GGSRFAFSGTGYYLKSAREMRELFKELPEACDNTLAIADRVEVSFDTNANYMPKFPCPPG 299

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            ++E + L  +   GL  R   G        +  R++ D+EL+VI +M F GYFL+VADFI
Sbjct: 300  EDETSWLIKEVDKGLHYRYPNG------IPEASRKQADYELDVIIKMGFPGYFLVVADFI 353

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             W+K + I VGPGRGSGAGS+ AYA+ ITD+DPL   L+FERFLNP+R+SMPDFD+DF  
Sbjct: 354  NWSKDHGIRVGPGRGSGAGSMVAYAMRITDLDPLVHGLIFERFLNPERVSMPDFDVDFDD 413

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR EVIRYV  KYG ERV+ I+T+GS++ K AL+D  R L  P+S  + L K +P    
Sbjct: 414  RRRSEVIRYVTEKYGDERVSMIVTYGSIKTKQALKDSSRVLGYPFSMGESLTKALPPAVM 473

Query: 485  HPVSLQAIADDSR---------FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                     D+           FR     DP   R+ E ++ LEGL R    HAAG+++ 
Sbjct: 474  AKDIPLNDIDNPESKRYSEAGDFRNLVANDPEAARVFETAKGLEGLKRQWGVHAAGVIMS 533

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGV 594
              P+  +VP+ R ++    +TQF+    E  GLIK DFLGL+ LT++  +L+ +    G 
Sbjct: 534  SDPIIDVVPIMRRIQDGQVITQFDYPTCEGLGLIKMDFLGLRNLTIISDALENIEYNTGT 593

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            K+DL  +  +D E Y+LL    TLG+FQL+   MR  L+ M+PD  EDI A+++LYRPGP
Sbjct: 594  KIDLETLTIEDPEAYNLLARGDTLGVFQLDGGPMRSLLKMMRPDNFEDISAVIALYRPGP 653

Query: 655  I--DNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIAQLLSGYSLS 708
            +  ++   Y  RK G +++  IHP +   L E    T G+I+YQEQVM IAQ L+GYSL 
Sbjct: 654  MGANSHTNYALRKTGLQEVTPIHPELAEPLAEILGGTYGLIVYQEQVMAIAQKLAGYSLG 713

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            +AD+LRRAMGKK K E+DKQ   F  G + NG S      ++++L  F+DY FNK+H+AA
Sbjct: 714  QADILRRAMGKKKKSELDKQFAGFKQGMNDNGYSDAAVQTLWDILLPFSDYAFNKAHSAA 773

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y V+SY TA++K HYP E++AA +T   D+ +K+  +  + R   I ++PP VN   ++F
Sbjct: 774  YGVVSYWTAYLKAHYPAEYMAALLTSVGDDKDKLALYLNECRHIGITVLPPDVNESALNF 833

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                  I + + AI+ VGT     ++EA A+   ++   DF  +V +   N+R +ESL+ 
Sbjct: 834  TPVGKDIRFGMGAIRNVGTNAVSGMVEARAEKGNYNDFNDFLGKVPAVVCNKRTIESLIK 893

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---AHEKGTFSDKITLEKFS 944
            AGA D   + R  L+   +        V++N      ++F     E  + S  + +    
Sbjct: 894  AGAFDSMKHPRRALVAIHEEAVDSVIQVKRNEAANQFDLFSALGAEDSSESMHVAIPDLP 953

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT---IRGNNIRLAAMV 1001
              +   +   E+ +LG Y S HPL      L +         ++      G+ I +A M+
Sbjct: 954  DWDKKEKLAYERDMLGLYVSDHPLQGLGSALDQYADMPVTHVLSDDGPQDGHIISIAGMI 1013

Query: 1002 VSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
               Q++  +K G+        + +   E  FF
Sbjct: 1014 SGLQRRIAKKSGNPYARCEIEDLSGSMEVMFF 1045


>gi|328675636|gb|AEB28311.1| DNA polymerase III alpha subunit [Francisella cf. novicida 3523]
          Length = 1159

 Score =  654 bits (1688), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1043 (37%), Positives = 593/1043 (56%), Gaps = 45/1043 (4%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL+VH+ +S+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4    HLRVHTGFSVVDSTVRLTDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131
             +L +D +  +               +VLL    +GYQ ++ LVS+ Y   D+      I
Sbjct: 64   VELKVDTEFGV-------------CDLVLLAENNQGYQNIVNLVSKAYQEADRFGSIPLI 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV-NLQRHR 190
              +WL++I    +I L GG  G + +A      + A++ +    ++FG   Y+  + +  
Sbjct: 111  PKNWLKDINLANVICLNGGQQGELGKAILAKDYRKADEIINQNVEIFGANNYIIEIHKLE 170

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248
               +     + ++ A  + L  VATN ++F+  +DY+ H++   +   T +  + R  + 
Sbjct: 171  YENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSKF 230

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T + YLK+  EM   FS LP  ++NT+ IA+RC+ + ++  P LP             E+
Sbjct: 231  TKEQYLKSAEEMYETFSALPVLVDNTLAIAKRCNVMFELGKPCLPTVDIPAG----LTEK 286

Query: 309  NELRNKAVAGLEVRLAQG-----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                     GL+ RL +      A    +  + Y+ RL  E+++I  M FSGYFLIV DF
Sbjct: 287  EYFSKLCYQGLDKRLEKILANRSADKHEHIIKVYKDRLQREIDIICDMGFSGYFLIVEDF 346

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            I+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDFC
Sbjct: 347  IRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLTYGLLFERFLNPERVSMPDFDIDFC 406

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
               RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  P
Sbjct: 407  IQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETP 466

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                +      +    +   AD  V  ++E +QKLEGL R    HAAGIVI    +S   
Sbjct: 467  GTTFNKILKEGEP-LYDEMQADEEVAEVIERAQKLEGLPRSLGKHAAGIVISPTKISDFA 525

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD----LS 599
            P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  +  +         ++
Sbjct: 526  PIYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTIKSINAKRPADQKPLDIA 585

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI 
Sbjct: 586  DIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENIP 645

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             + +RK+G+++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMGK
Sbjct: 646  TFIDRKHGRKQIAYLHPLLEEVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGK 705

Query: 720  KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K  EEM++Q++ F  GA+K + I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTAW
Sbjct: 706  KKPEEMEQQRKIFKEGAAKYHNIDAKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAW 765

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYY 837
            +K HYP E++AA M+ +M N +++ KF  D +   I ++ P+VN    D   +    I  
Sbjct: 766  LKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMGITVLAPNVNKSVYDCIAISKGTILL 825

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L AIKG+G    + I+    A+  F S+ D   RVD +K+N++ LE+L FAGA+     
Sbjct: 826  GLGAIKGLGGEAVKSILTERDAEGEFSSIFDLTRRVDLRKVNKKALEALCFAGAIKDISR 885

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVRFE 953
            +R     S++   K A +V +      +++F   +        LEK       N      
Sbjct: 886  NRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDTELEKECIVEEWNLKELLI 945

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAA-MVVSKQQKK 1008
            NE++ LG YFSGH +D  +   R      + +        + GN++R+ A M+    ++K
Sbjct: 946  NEKKALGMYFSGHIIDE-ESHWRNH--VSFSDLNKIQQPNMDGNSVRIIASMITPAIRRK 1002

Query: 1009 TRKGSRIGWVTFSEPAKEYEANF 1031
            T+ G  +  +   +     +   
Sbjct: 1003 TKTGKVLYIINIDDEFDRADCLI 1025


>gi|91788754|ref|YP_549706.1| DNA polymerase III subunit alpha [Polaromonas sp. JS666]
 gi|91697979|gb|ABE44808.1| DNA polymerase III, alpha subunit [Polaromonas sp. JS666]
          Length = 1190

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/1056 (39%), Positives = 605/1056 (57%), Gaps = 42/1056 (3%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            +  +++   FVHL++H+ +S+++G   ++ I+   AADQQPA+AITD +NLF  ++F ++
Sbjct: 12   SPKMKRM--FVHLRIHTEFSVVDGTNRIDEIVQAAAADQQPALAITDLSNLFGTVKFYKE 69

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
               AG++P+IG  + + +          +            V    GY  L EL++R + 
Sbjct: 70   GRGAGVKPLIGADVWVQVPGKDAAAPAARLLLL--------VQNHRGYLNLSELLTRAWT 121

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             +  +    I L WL+E+  EGLI L+G   G + +A        A +  L    LF  R
Sbjct: 122  RNVVRDQAVIKLEWLEEL-NEGLIALSGAQGGAVGQALLQGDDARALECALHLAGLFPHR 180

Query: 182  LYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ LQR  R  D    +  VQLA   +LP+VAT+   FL+ +DYEAH+  + +A   ++
Sbjct: 181  FYLELQRAQRPDDERHVAAAVQLAARLKLPVVATHPVQFLTYDDYEAHEARVCIAEGEIL 240

Query: 241  SQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                R R  T + Y K+ ++M  +F+D+P AL NT+EIARRC+  L++  P+LP +   E
Sbjct: 241  GNTRRVRKFTREQYFKSAAQMTQLFADVPSALANTLEIARRCNLKLELGKPMLPDYPTPE 300

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGY 356
             + ++   +   R+ +  GLE RLA     +    Q    Y +RL+FE+N I +M F GY
Sbjct: 301  VEGVRMPIDAYFRHASFEGLEERLAHLYPNEALRDQKRPVYVERLEFEINTILKMGFPGY 360

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FLIV DFI WAK N  PVGPGRGSGAGS+ AYAL ITD+DPL+++LLFERFLNP+R+SMP
Sbjct: 361  FLIVGDFINWAKNNGCPVGPGRGSGAGSLVAYALRITDLDPLQYNLLFERFLNPERVSMP 420

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            DFDIDFCQ  RD VI YV++KYGH+ V+QI+TFG++ A+AA+RDVGR L  PY   D + 
Sbjct: 421  DFDIDFCQSNRDRVIDYVKDKYGHDAVSQIVTFGTMAARAAIRDVGRVLDFPYGFCDGIS 480

Query: 477  KLIPNDPAHPVS--------------LQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            KLIPN P   V+              + A+  +    E    +  V  LL++++KLEGL 
Sbjct: 481  KLIPNKPGQAVTLQLLPAERKKNDKMVYALEAEPVLAERERKEEDVHTLLDLARKLEGLT 540

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            R+   HA G++I    L+   P+Y    S   V+QF+   +E  GL+KFDFLGL TLT+L
Sbjct: 541  RNVGMHAGGVLIAPGKLTDFCPLYLQPGSGSAVSQFDKNDVEAIGLVKFDFLGLATLTIL 600

Query: 583  QKSLDFLAQRGV---KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            + + +F+ QR           +  +D   Y L     T  +FQ ES GM++ L+  +P+ 
Sbjct: 601  EIAREFIIQRHPSQKDFKFENLSLNDARVYALFAEGNTEAVFQFESIGMQRMLKDAKPNR 660

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            +ED+IA+ +LYRPGP+D I  Y  RK GKE      P + P+L+ET G+++YQEQVMQ A
Sbjct: 661  LEDLIAMNALYRPGPMDLIPTYIARKQGKEVPEYPDPRVKPILEETYGIMVYQEQVMQTA 720

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q+L GYSL  AD+LRRAMGKK ++EM  Q++ F  GA  NG+++  A  +F+L+ KFA Y
Sbjct: 721  QILGGYSLGGADMLRRAMGKKDEKEMASQRDIFRKGAGVNGLTQEKADEVFDLMEKFAGY 780

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFNKSH+AAYA+++Y TAW+K HY  EF AA+MT+EMD+ +K+K    DA++  IQ   P
Sbjct: 781  GFNKSHSAAYALLAYHTAWLKVHYTAEFFAANMTVEMDDTDKLKILFGDAQKMGIQFESP 840

Query: 820  SVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKL 877
             +N     F+ +    + Y L A+KG G      I+ A  +  PF SL DFC RVD  KL
Sbjct: 841  DINRGDYRFEPISATAVRYGLGAVKGTGQQAIAAIVAARQEGGPFTSLYDFCVRVDRSKL 900

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFS 935
            N+R +E+L+  GA D    +R +LL S+D   ++A   E N       +F         +
Sbjct: 901  NKRTVEALIKGGAFDNLHLNRAELLASVDRAFEFAAATEAN--ANQGGLFDMSDSHAAST 958

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
             +  L +        R   E+  +GFY SGH  D  +  +R+   +  E+ + +      
Sbjct: 959  QEPPLVEAVPFGVKARLVLEKTAIGFYLSGHLFDEVEAEVRQFAKRKIEDLIDSREPQ-- 1016

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             LAA++   +     +G  I +    +     EA+ 
Sbjct: 1017 LLAAILSDLRVINGNRGKLIIF-KLDDKTDVLEASV 1051


>gi|319942633|ref|ZP_08016941.1| DNA polymerase III alpha subunit [Sutterella wadsworthensis 3_1_45B]
 gi|319803812|gb|EFW00744.1| DNA polymerase III alpha subunit [Sutterella wadsworthensis 3_1_45B]
          Length = 1153

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/1036 (38%), Positives = 585/1036 (56%), Gaps = 29/1036 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  SP FVHL+ HS YS+ +G + ++ ++  +      A+ I+D  N+F  L F   A A
Sbjct: 19   MP-SPRFVHLRFHSEYSITDGIVRIDPMIHAVLEGGGAAVGISDLMNVFGGLRFYTHALA 77

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++PI+GC L +    +L               + +L    EGY  L  L+++ +L + 
Sbjct: 78   AGLKPILGCDLKVINPKDLNKP----------FRLGVLCMNHEGYHSLSVLLTKAFLTNN 127

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  +   W  + G+EGLI L+G + G +          +A +    FK  F  R YV
Sbjct: 128  DAARGLVDPKWFDDGGSEGLIALSGAAQGELGSLLLGKKWALAHEAAERFKAQFPGRFYV 187

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR  R  D    +++   A   +LP+VAT+   FL  ED+EAH+V  ++A    +   
Sbjct: 188  ELQRAGRPTDELATARLANFAVEEKLPVVATHPIQFLKPEDFEAHEVRCSIAEGYTLQDP 247

Query: 244  DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  R TP+ YLK+ +EM  +F+D+P A+ENTVEIA+RC+    +  P LP F   +   
Sbjct: 248  RRVKRYTPEQYLKSEAEMCELFADIPAAIENTVEIAKRCNLDGVLSKPQLPLFPTPDGMS 307

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +    +  L  + +      L             Y +RL++EL +I  MKF GYFLIV D
Sbjct: 308  LDDYIDQ-LSKEGLQKRLEFLYPDPKVLEERRPPYDKRLEYELGIIKGMKFPGYFLIVQD 366

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI W+K + +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD+DF
Sbjct: 367  FINWSKTHGVPVGPGRGSGAGSLVAYSLGITDLDPLHFDLLFERFLNPERVSMPDFDVDF 426

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ  RD  I YV+  YG + V+QI TFG+L AKA +RDVGRAL +PY + D L KLIP  
Sbjct: 427  CQYNRDRTIDYVKRTYGVDAVSQIATFGTLGAKAVVRDVGRALDVPYMKTDALAKLIPMQ 486

Query: 483  PAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P   +S   AIA+   F+EA   D     ++ +++ LEGL R+   HA G++I    L+ 
Sbjct: 487  PGRNISLDDAIAEVPEFKEAIERDDEYKEIIRLAKPLEGLTRNLGMHAGGVLIAPGKLTD 546

Query: 542  LVPMYR-DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--VKVDL 598
              P+Y  D R +  ++QF+ K +E  GL+KFDFLGL TL++L K+++ + +       +L
Sbjct: 547  FCPLYNSDGRPENTISQFDKKDVENVGLVKFDFLGLTTLSILAKAVEIIDKLYPEQHFEL 606

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY L     T  +FQ ES GMR  L+  +PD +ED++AL +LYRPGP+D I
Sbjct: 607  ERIPVDDAATYELFQQANTAAVFQFESDGMRGLLKQARPDRLEDLVALNALYRPGPMDLI 666

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y +RK G+EK+  +   ++P+LKET G+++YQEQVM++AQ++ GYSL  AD+LRRAMG
Sbjct: 667  PSYIDRKFGREKVEYLDDRMEPVLKETYGIMVYQEQVMRVAQVVGGYSLGGADLLRRAMG 726

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM +Q+  FI GA + G+ +++A  IF+L+ KFA YGFNKSHAAAY+ ++YQTA+
Sbjct: 727  KKNVEEMKRQRAVFIKGAGERGVKESVATEIFDLMEKFAGYGFNKSHAAAYSYVAYQTAY 786

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYY 837
            +K H+   F AA++ + MD+ +K+K    DAR   +    P VN     F V  +N I  
Sbjct: 787  LKVHHTAAFFAANLCMVMDDGDKMKALIDDARANGVDFRLPDVNVSEWFFSVPTENVIQL 846

Query: 838  SLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L AIKG+       I+ E  A+ PF+ + DF +RV+   +N R+ ES+V AGA D    
Sbjct: 847  GLGAIKGINRALVEAIVSEREANGPFEDIFDFAARVE--GVNFRIFESMVRAGAFDSTDA 904

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R +L  ++ N  +    V   ++   +++F  E+      +   +    +     E E 
Sbjct: 905  DRGKLFSNISNALQGGAAVR--QSAGQDSLFGGEETKKI--VNWVEGEQWSFRRNLEEEM 960

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
               GF  SGH  D YK  LR +G    +E   +     + +  ++ S +Q   ++G  +G
Sbjct: 961  TAFGFSLSGHFFDEYKDDLRAIGCMPLDELQVSKEN--VCVGGVISSIRQINGKRG-VMG 1017

Query: 1017 WVTFSEPAKEYEANFF 1032
             V   +     E   F
Sbjct: 1018 VVGIDDGTHSIEFFAF 1033


>gi|42520619|ref|NP_966534.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of
            Drosophila melanogaster]
 gi|42410358|gb|AAS14468.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of
            Drosophila melanogaster]
          Length = 1109

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 465/1025 (45%), Positives = 657/1025 (64%), Gaps = 45/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+VHS YSLLE ++ +  ++     ++ PA+AITD+ NLF +LEF++ A + GIQ I
Sbjct: 2    FIHLRVHSVYSLLESSVKIEELIGLCLRNKMPAVAITDSGNLFGSLEFAEYAASRGIQLI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS-V 129
            IGC + +   +                 I+LL    +GY  L+ LVS  +   +      
Sbjct: 62   IGCNIIVKHSE-------------QNLPILLLAKNEQGYTNLVTLVSESFRKRKNNSDIP 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L  + + GLI LTG   G + +       +  EK L      F   LYV LQRH
Sbjct: 109  YVDFDELLNL-STGLIALTG---GSLAQLLLGQDKETVEKLL----SAFNGHLYVELQRH 160

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E  ++  AY   +PLVATN+  F +  DYEA+D+L  ++  +   + +R ++
Sbjct: 161  GLNKELELEEALIDFAYQRNIPLVATNDVFFPNRSDYEAYDILTCISEGSYALENNRKKL 220

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T +HY K+ +EM  +FSD+PEA+ NT+ IA+RCS++ +   PILP+F  +E     K E 
Sbjct: 221  TTEHYFKSVAEMEELFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCRE----NKTEN 276

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             ELR +AVAGLE R+A          + Y  RL++EL+VI  M ++GYFLIV+DFI+W+K
Sbjct: 277  EELREQAVAGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSK 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N IPVGPGRGSGAGS+ A+ L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++RD
Sbjct: 334  ANGIPVGPGRGSGAGSIVAWGLQITDLDPIKFGLIFERFLNPDRVSMPDFDIDFCQEKRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI YVQ KYG   VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +PV+
Sbjct: 394  LVIDYVQKKYG--YVAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPVT 451

Query: 489  -LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              QAI  D   ++ R +D  + +LL+IS +LEG+YRH STHAAGIVI D+ L   VP+Y 
Sbjct: 452  LSQAIEFDQNLQKERDSDEVIAKLLDISLRLEGIYRHVSTHAAGIVICDQKLENFVPVYY 511

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D  S LP+TQ++MK++EKAGLIKFDFLGL TLTL+      + + G K+D+S +P +D +
Sbjct: 512  DPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDGKKIDISSVPLNDQK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L++  ++G+FQLESSGMR+AL  ++PDCIEDIIAL+SLYRPGP+DNI  Y  RK+G
Sbjct: 572  TYEILSSGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             EK   IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIKEEMDK
Sbjct: 632  LEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKEEMDK 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+E FI GA+KNG+    A  IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+EF
Sbjct: 692  QRELFIQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPLEF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A M L +D+ +K+  F   A+   + ++ P +N    +F + D RI Y +AA++ VG 
Sbjct: 752  FTALMNLNIDDRDKLNLFYHAAKFSGVTVLSPDINNSQAEFSIEDERIRYGIAALRNVGF 811

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            +    I+   +      + +F        +N+R LESL+ +GA D    +R QL +S+D 
Sbjct: 812  SIVEGIVNVRSSAC-KDIWEFIQN-SGHIINKRALESLIKSGAFDSVHKNRKQLYESMDT 869

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +  +A   ++++ +    +F         K  LE     +   + E+E   LGFY + HP
Sbjct: 870  LIYFANKNKQDKESSQAALFGSLDVL---KPKLENVEDFDEEEKLEHELFSLGFYLTNHP 926

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L+ ++ +L K+ I    E          + A ++++ + + + +G R   +T S+P    
Sbjct: 927  LEKFRTLLEKLNIGFIGE------NRTAKTAGVILNARMRTSERG-RFVILTLSDPHNVS 979

Query: 1028 EANFF 1032
            E  F+
Sbjct: 980  EIAFY 984


>gi|194336619|ref|YP_002018413.1| DNA polymerase III, alpha subunit [Pelodictyon phaeoclathratiforme
            BU-1]
 gi|194309096|gb|ACF43796.1| DNA polymerase III, alpha subunit [Pelodictyon phaeoclathratiforme
            BU-1]
          Length = 1189

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/1072 (34%), Positives = 573/1072 (53%), Gaps = 62/1072 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F+HL  H+ YS+    +  + I          ++A+TD   +F+  E   +A +AGI+ 
Sbjct: 2    DFIHLHAHTHYSMQSSPIFPDEIFSAAVKFGMKSVAVTDYCAMFNMPELFSEAKSAGIKL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +     L+      +  P  PS+VLLV    GY+ L  L+SR           
Sbjct: 62   IIGSELLL-----LETDAHQHSRIPVSPSLVLLVQNDAGYRNLCILLSRAAREGFVNGMP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I    L+    EGLI L+  S+G I RA    ++  AE     +K++FGDR Y+ LQRH
Sbjct: 117  HIESRLLESCH-EGLIALSAYSAGRIGRALLAGATDEAETFAAYYKQIFGDRFYLELQRH 175

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247
               +D     Q + LA    + LVATNN  +L  +D + +  ++A      + +Q  +  
Sbjct: 176  NTPFDDKLNEQTIALAEKLGIELVATNNVHYLERKDADCYRAMVANRTKEKLSNQNLQAL 235

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               DHYLK+  EM ++FSD    L NT  IA +CS+      PILP F   E     + E
Sbjct: 236  AGSDHYLKSSGEMSALFSDAHRELSNTALIAGKCSYSFSDKEPILPHFPLPEGF---ESE 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR+  + G + + A  A A G  A+D R R++ EL VI +M FS YFLIV+D I  +
Sbjct: 293  FAYLRHLTLEGAKEKYA-DADADGISAEDVRARIELELGVIEKMGFSSYFLIVSDLIAAS 351

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++    VGPGRGS AGS+ AY   IT IDPL++ LLFERFLNP+R SMPD DIDF    +
Sbjct: 352  RRLGYSVGPGRGSAAGSIVAYLTGITRIDPLKYKLLFERFLNPERSSMPDIDIDFTPVGK 411

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +V+ Y   KYG E VA++I  G+  AKAA+RD GR L++P   VD+L KL+P  P   +
Sbjct: 412  QKVLEYTVEKYGTESVAKVIAIGTFAAKAAIRDAGRVLEVPLPLVDKLAKLVPVKPGITL 471

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+++    ++   + P +  L+  ++ LEG  R+ S HA  +VI D  L + VP+Y 
Sbjct: 472  E-KALSEAKEMQQFAESTPELRELIRYARALEGRARNVSMHAGAVVITDGRLEEQVPLYV 530

Query: 548  -----------------------------DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                                                VTQF+  WIE +GL+K D+LGL+T
Sbjct: 531  SNKIETEVRKFADEIDLDEPDHVRGKASDGSEEKQVVTQFDKNWIETSGLLKIDYLGLET 590

Query: 579  LTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            L ++ ++L  + +R    ++L  +P +D +T+ +       GIFQ ESSGM+  +  +QP
Sbjct: 591  LAVIDETLKMIKRRHNLDIELEKVPMNDRKTFRIFQEGKMAGIFQFESSGMQSYMTRLQP 650

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNR--------KNGKEKIVSIHPLIDPMLKETQGVI 689
              I DIIA+ +LYRPG ++  +             K+G+E I  +HP+++ +LKET GVI
Sbjct: 651  TQIGDIIAMSALYRPGALNARIDEKRNAVDLFVDRKHGREAIDYMHPMLETILKETYGVI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI+Q++ G+SL++AD LR+AMGKK  E M+K K  F+ GA K G+  T+A  +
Sbjct: 711  VYQEQVMQISQVMGGFSLAKADNLRKAMGKKKPEIMEKYKADFVQGAIKQGVHDTLATRV 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            FEL+A+FA YGFNKSH+AAY V++Y T ++K HY +EF+ A +  E+ ++E++K    +A
Sbjct: 771  FELMAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFVTAVLNSEIGDIERMKHLTDEA 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIM--EASADKPFD 863
            + F I  +PPS+N     F V D      I   L+AIK VG   AR ++       + F 
Sbjct: 831  KSFGISTLPPSINKSDALFAVEDAGGRSFIRVGLSAIKQVG-AAARAVVTSRLRRKRDFV 889

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
            +L D  + VD + +NR+ LE L+ +GA D     R +LL ++D   K+ Q   ++ T   
Sbjct: 890  NLFDLAASVDLRVMNRKALECLILSGAFDEIDQHRARLLANVDKAFKFGQMQNRSVTLGQ 949

Query: 924  ENIFAHEKGTFSDKITLEKFSV---ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
               F  E+G   ++              + +  +E++++GFY S HPL  Y+   +    
Sbjct: 950  CGFFTAEEGAELEEAHYPDMDAAEMMPEAEKLLHEKKLVGFYLSHHPLSPYRRDWQAFAT 1009

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                ++   +     ++  ++VS +  + RKG ++ +    +   + +   F
Sbjct: 1010 LQL-DAKEVVAAKQYKVLGLIVSVKPYQDRKGKQMLFGIIEDFTGKADFTVF 1060


>gi|291513949|emb|CBK63159.1| DNA polymerase III, alpha subunit [Alistipes shahii WAL 8301]
          Length = 1269

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1148 (31%), Positives = 563/1148 (49%), Gaps = 129/1148 (11%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ-------K 61
            P FVHL VH+ YS+L+G  S+  ++DK  AD QP IA+TD  ++F   EF         K
Sbjct: 2    PQFVHLHVHTQYSILDGQASVQRLVDKAMADGQPGIAVTDHGDMFGIKEFYNYVQKVKGK 61

Query: 62   AC-----------------------AAGI----------------QPIIGCQLDIDMQDN 82
                                     AA I                +PIIGC++ +     
Sbjct: 62   CKDKAAEAEARIAALRDGTETCADPAAEIAKCERQLEECRRKLAFKPIIGCEVYVA---R 118

Query: 83   LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142
             ++ ++   P  +   ++LL    +GY  LI++VS+ +  +      R   + +++   E
Sbjct: 119  RRLHDKEGKPDQSGYHLILLAKNLKGYHNLIKIVSKAWT-EGFYMRPRTDRTEIEKYH-E 176

Query: 143  GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-----------G 191
            GLI  +   +G + RA   N  + AE+ +   KK+FGD  Y+ LQ H+            
Sbjct: 177  GLICCSACLAGEVPRAITANDLEKAEESIRWHKKVFGDDYYLELQLHKATVERANHEAYP 236

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
               +    + +LA  H + +V TN+  F+ E++ EAHD L+ ++    +    R   +  
Sbjct: 237  MQLHVNKHLRELAAKHNVRMVCTNDVHFVDEDNAEAHDRLICLSTGKDLDDPKRMLYSKQ 296

Query: 252  HYLKNRSEMVSIFSDLPE-ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE---- 306
             +LK  +EM +IF      A+  TV+I  +       HAPI+P F   E    + E    
Sbjct: 297  EWLKTTAEMAAIFGQTDPEAMSTTVDICNQIECYSIDHAPIMPNFEIPEEFGTEAEYRAR 356

Query: 307  ---------------------EENELRNKAVAGLEVRLAQGAIAKGYH------------ 333
                                 EE  L+     G   +L +      Y             
Sbjct: 357  LTEKDLFDEFTRDENGNVVMSEEEGLKKIQKLGGYDKLYRIKFEADYLAKLTMDGAHRRY 416

Query: 334  ----AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAY 388
                 ++  +RL FEL+++  M F GYFLIV DFI+ A++  ++ VGPGRGS AGS  AY
Sbjct: 417  GEQLTEEQEERLKFELHIMKTMGFPGYFLIVQDFIRAAREELDVSVGPGRGSAAGSAVAY 476

Query: 389  ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
             L IT IDP+ + LLFERFLNPDR+S+PD D+DF  D R  V+ +V  KYG E+VA IIT
Sbjct: 477  CLGITQIDPIAYDLLFERFLNPDRISLPDIDVDFDDDGRGRVLNWVTQKYGKEKVAHIIT 536

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHPVSLQAIADDSRFREARL-AD 505
            +G++  K A++DV R  ++  S+ DRLCKL+P+           AI      + A    +
Sbjct: 537  YGTMATKLAIKDVARVQKLMLSESDRLCKLVPDKIPDKKLNLQNAIDYVPELKAAEQSDN 596

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD----LPVTQFNMK 561
            P +   +  ++ LEG  R+   HA G +I    ++  VP+      +    + VTQ+   
Sbjct: 597  PILRDTIRYAKMLEGNVRNTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGS 656

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--VKVDLSLIPFDDHETYHLLTTKGTLG 619
             IE  GLIK DFLGLKTL++++ +++ +                +D  TY L     T+G
Sbjct: 657  VIEDTGLIKMDFLGLKTLSIIKDAVENIRLTKGVKIDIDDFTIINDPATYRLYGEGRTVG 716

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
             FQ ES+GM++ L  +QP   ED+IA+ +LYRPGP+D I  +  RK+G+  I    P+++
Sbjct: 717  TFQFESAGMQKYLRELQPSTFEDLIAMNALYRPGPMDYIPDFIARKHGRSPIEYDIPVME 776

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
              LK+T G+ +YQEQVM +++LL+ ++  E+D LR+AMGKK+K+++D  K +FI G  KN
Sbjct: 777  KYLKDTYGITVYQEQVMLLSRLLANFTRGESDTLRKAMGKKLKDKLDHLKPKFIEGGRKN 836

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G    +   I+    KFA Y FNKSHA  Y+ ++YQTA++K +YP E++AA ++  + N+
Sbjct: 837  GHDPKVLEKIWGDWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVLSRNLTNI 896

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA 858
            E++  +  + ++  I +M P +N     F       + + LAA+KGVG      I+    
Sbjct: 897  EQLTLYMNECKRMGISVMGPDINESMRTFSSNAAGDVRFGLAAVKGVGAAAVESIIAERK 956

Query: 859  -DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQS----------LD 906
             + PF  + DF  RV+   +NR+ LE+L +AGA D    ++R +              ++
Sbjct: 957  ANGPFKDIYDFVERVNYSLVNRKCLENLAYAGAFDSISDFARCKYFGVDLRDSSGITFIE 1016

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             + +Y Q  +  + N  +++F   +     +  L   +  +   +   E+ ++G Y S H
Sbjct: 1017 QLMRYGQRFQTEQNNAQQSLFGGGEHVDIQRPVLPACADWSQLEKLTKEREMVGLYLSAH 1076

Query: 967  PLDVYKPILRKMGIKGYEESVAT--IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            PLD YK I+  M      E      ++G  I +A MVV  Q   T+ G   G     +  
Sbjct: 1077 PLDDYKIIIDHMCKTQLSELENLDALKGQEIAVAGMVVGVQNLMTKTGKPWGKFKLEDYN 1136

Query: 1025 KEYEANFF 1032
              +E   F
Sbjct: 1137 GGHEFALF 1144


>gi|213019585|ref|ZP_03335391.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Culex
            quinquefasciatus JHB]
 gi|212995007|gb|EEB55649.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Culex
            quinquefasciatus JHB]
          Length = 1118

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 464/1025 (45%), Positives = 653/1025 (63%), Gaps = 48/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+VHS YSLLE ++ +  ++     ++ PA+A+TD+ NLF +LEF++ A   GIQ I
Sbjct: 14   FIHLRVHSVYSLLESSVKIEELIGLCLQNKMPAVAVTDSGNLFGSLEFAEYAANKGIQLI 73

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS-V 129
            +GC + +                    SI+LL    +GY  L+ LVS  +   +      
Sbjct: 74   VGCNIIV-------------RHLEQNLSILLLAKNEQGYTNLVTLVSESFKKRKNSSDIP 120

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L    T GLI LTG   G + +       +  ++ +      F   LYV LQRH
Sbjct: 121  YVDFDELLSFNT-GLIALTG---GCLAQLLL----EQDKETVEKLLSAFDGHLYVELQRH 172

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E  ++  AY   +PLVATN+  F +  DYEA+D+L  ++  +   + +R ++
Sbjct: 173  GLNKELELEEALIDFAYQRNIPLVATNDVFFSNRSDYEAYDILTCISEGSYALENNRKKL 232

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T +HY K+ +EM  +FSD+PEA+ NT+ IA+RCS++ +   PILP+F  +E     K E 
Sbjct: 233  TTEHYFKSVAEMEELFSDIPEAIYNTLVIAKRCSYMPRSRQPILPKFPCRE----NKTEN 288

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             ELR +AVAGLE R+A          + Y  RL++EL+VI  M ++GYFLIV+DFI+W+K
Sbjct: 289  EELREQAVAGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSK 345

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N IPVGPGRGSGAGS+ A++L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++RD
Sbjct: 346  ANGIPVGPGRGSGAGSIVAWSLQITDLDPIKFGLIFERFLNPDRVSMPDFDIDFCQEKRD 405

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI YVQ KYG   VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +PV+
Sbjct: 406  LVIDYVQKKYG--YVAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPVT 463

Query: 489  -LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              QAI  D   ++ R +D  + +LL+IS KLEG+YRH STHAAGIVI D+ L   VP+Y 
Sbjct: 464  LSQAIEFDQNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVYY 523

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D  S LP+TQ++MK++EKAGLIKFDFLGL TLTL+      + +   K D+S +   D  
Sbjct: 524  DPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDKKKFDISSVSLIDQR 583

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L+   ++G+FQLESSGMR+AL  ++PDCIEDIIAL+SLYRPGP+DNI  Y  RK+G
Sbjct: 584  TYEMLSRGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARKHG 643

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             EK   IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIK EMDK
Sbjct: 644  LEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKAEMDK 703

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+E F+ GA+KNG+    A  IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +YP+EF
Sbjct: 704  QRELFVQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAIISYQTAYLKANYPLEF 763

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A M L +D+ +K+  F   A+   + ++ P ++    +F +G   I Y +AA++ VG 
Sbjct: 764  FTALMNLNIDDRDKLNLFYHAAKFSGVAVLSPDISKSKAEFSIGGEHIRYGIAALRNVGF 823

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              A  I+ A +   +  + +F   +    +N+R LESL+ +G  D    +R QL +S+D 
Sbjct: 824  AIAEGIVNARSS-SYKDIWEFIQNLGH-IINKRALESLIKSGTFDSVHKNRKQLYESIDT 881

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +  +A    KNR +    +F H       K  LE     N   + E+E   LGFY + HP
Sbjct: 882  LIYFA---NKNRQSNQAALFGHLDIL---KPKLENVEDFNEEEKLEHELFSLGFYLTNHP 935

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L+ ++ +L+K+ I    ES        I+ A ++++ + + + +G R   +T S+P    
Sbjct: 936  LEKFRTLLKKLNIGFIGES------KTIKTAGVILNVRMRTSERG-RFVILTLSDPHNVS 988

Query: 1028 EANFF 1032
            E  F+
Sbjct: 989  EIAFY 993


>gi|190571064|ref|YP_001975422.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Culex
            quinquefasciatus Pel]
 gi|190357336|emb|CAQ54766.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of Culex
            quinquefasciatus Pel]
          Length = 1106

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 464/1025 (45%), Positives = 653/1025 (63%), Gaps = 48/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+VHS YSLLE ++ +  ++     ++ PA+A+TD+ NLF +LEF++ A   GIQ I
Sbjct: 2    FIHLRVHSVYSLLESSVKIEELIGLCLQNKMPAVAVTDSGNLFGSLEFAEYAANKGIQLI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS-V 129
            +GC + +                    SI+LL    +GY  L+ LVS  +   +      
Sbjct: 62   VGCNIIV-------------RHLEQNLSILLLAKNEQGYTNLVTLVSESFKKRKNSSDIP 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L    T GLI LTG   G + +       +  ++ +      F   LYV LQRH
Sbjct: 109  YVDFDELLSFNT-GLIALTG---GCLAQLLL----EQDKETVEKLLSAFDGHLYVELQRH 160

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E  ++  AY   +PLVATN+  F +  DYEA+D+L  ++  +   + +R ++
Sbjct: 161  GLNKELELEEALIDFAYQRNIPLVATNDVFFSNRSDYEAYDILTCISEGSYALENNRKKL 220

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T +HY K+ +EM  +FSD+PEA+ NT+ IA+RCS++ +   PILP+F  +E     K E 
Sbjct: 221  TTEHYFKSVAEMEELFSDIPEAIYNTLVIAKRCSYMPRSRQPILPKFPCRE----NKTEN 276

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             ELR +AVAGLE R+A          + Y  RL++EL+VI  M ++GYFLIV+DFI+W+K
Sbjct: 277  EELREQAVAGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSK 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N IPVGPGRGSGAGS+ A++L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++RD
Sbjct: 334  ANGIPVGPGRGSGAGSIVAWSLQITDLDPIKFGLIFERFLNPDRVSMPDFDIDFCQEKRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI YVQ KYG   VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +PV+
Sbjct: 394  LVIDYVQKKYG--YVAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPVT 451

Query: 489  -LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              QAI  D   ++ R +D  + +LL+IS KLEG+YRH STHAAGIVI D+ L   VP+Y 
Sbjct: 452  LSQAIEFDQNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVYY 511

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D  S LP+TQ++MK++EKAGLIKFDFLGL TLTL+      + +   K D+S +   D  
Sbjct: 512  DPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDKKKFDISSVSLIDQR 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L+   ++G+FQLESSGMR+AL  ++PDCIEDIIAL+SLYRPGP+DNI  Y  RK+G
Sbjct: 572  TYEMLSRGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             EK   IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIK EMDK
Sbjct: 632  LEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKAEMDK 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q+E F+ GA+KNG+    A  IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +YP+EF
Sbjct: 692  QRELFVQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAIISYQTAYLKANYPLEF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A M L +D+ +K+  F   A+   + ++ P ++    +F +G   I Y +AA++ VG 
Sbjct: 752  FTALMNLNIDDRDKLNLFYHAAKFSGVAVLSPDISKSKAEFSIGGEHIRYGIAALRNVGF 811

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              A  I+ A +   +  + +F   +    +N+R LESL+ +G  D    +R QL +S+D 
Sbjct: 812  AIAEGIVNARSS-SYKDIWEFIQNLGH-IINKRALESLIKSGTFDSVHKNRKQLYESIDT 869

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +  +A    KNR +    +F H       K  LE     N   + E+E   LGFY + HP
Sbjct: 870  LIYFA---NKNRQSNQAALFGHLDIL---KPKLENVEDFNEEEKLEHELFSLGFYLTNHP 923

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L+ ++ +L+K+ I    ES        I+ A ++++ + + + +G R   +T S+P    
Sbjct: 924  LEKFRTLLKKLNIGFIGES------KTIKTAGVILNVRMRTSERG-RFVILTLSDPHNVS 976

Query: 1028 EANFF 1032
            E  F+
Sbjct: 977  EIAFY 981


>gi|210635289|ref|ZP_03298485.1| hypothetical protein COLSTE_02416 [Collinsella stercoris DSM 13279]
 gi|210158450|gb|EEA89421.1| hypothetical protein COLSTE_02416 [Collinsella stercoris DSM 13279]
          Length = 1267

 Score =  653 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/1139 (29%), Positives = 537/1139 (47%), Gaps = 124/1139 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL  H+ YS+L+GA  + +++ +     QPA+AITD   ++   E      A     
Sbjct: 2    AFVHLHNHTVYSMLDGATRIKDMVQRAVDLGQPAVAITDHGYMYGVPELGLACDAVN--- 58

Query: 70   IIGCQLD---------IDMQDNLKMTNQGKTPFPTVPS---------------------I 99
              G             ++     ++    K   P                         +
Sbjct: 59   -HGTPEYKVWSHDKSFLEKGRRDELECPDKDADPRGYEQHMKDLAMWDAQGNIDELKPPL 117

Query: 100  VL---------------LVSTA--------------EGYQRLIELVSRMYLLDQGKQSVR 130
            V+               L                  +GY  L++ VS    +       R
Sbjct: 118  VIKPIFGCEVYFTPDDTLARDRKPELYHMVLFAQNEKGYVNLMQTVSEA-AVQGFYYKPR 176

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
            + L  L+    EGLI  +   +G I +         A +   TF+  F     Y+ +Q H
Sbjct: 177  VTLDNLRR-HREGLIASSACIAGIIPKCIDRGEMDKAIEWAETFRDTFEPGNFYIEIQEH 235

Query: 190  ------RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
                     D      ++++A    + ++ATN+  +L+ +D    DV+M +   + +   
Sbjct: 236  GITTDSGITDEELSKTLIEIARQVGVKVIATNDFHYLTRDDAPVQDVIMCIGTGSKIDDP 295

Query: 244  DRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +R R+   + Y+K   EM ++F   PEA +NT+EIA +C+  L   + ILP +      D
Sbjct: 296  NRIRMEGSEFYMKTEDEMRALFPYCPEACDNTLEIAEKCNVELDWDSIILPNYPL---LD 352

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +  E++ R +   GL  R       K     D R+R +FE  VI    F+ YFLIVA+
Sbjct: 353  PGETHESQFRRECEEGLAKRYGADWDGKEIGGVDIRERFEFEYKVICDKGFAAYFLIVAE 412

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +++WAK+N I VGPGRGS AG++ AYA+ IT  DPL   L+FERFL+P+R  MPD D+DF
Sbjct: 413  YVRWAKQNGIGVGPGRGSAAGALVAYAMDITTFDPLSNGLMFERFLSPERTEMPDIDMDF 472

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR EV+ +V+  YG E+V  +IT+ +++AK A+ D  R L  P     RL K++P D
Sbjct: 473  DDERRLEVVEHVRQLYGPEKVTHVITYSTIKAKQAINDAARVLDYPVYMGQRLSKMVPGD 532

Query: 483  PAHPVSL-------QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            P   +         +    +    EA   D    R+++ +  +EGL R    HA  ++I 
Sbjct: 533  PGVKLKQVLEKIPGKEDMYNPDLVEAYQKDEDARRIIDTALSIEGLTRGEGVHACAVLIC 592

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594
               +++ VP   D +  + +TQ+    +   GL+K DFLGL+TLT++ K+   + +   +
Sbjct: 593  RDAVNEHVPTKLDTKGGVEITQYEGHTVADMGLLKMDFLGLRTLTVISKAKANIKKNFGI 652

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             +D+  IPFDD + + L+++  T G+FQ+ES+GM   ++ M+P   + ++AL++LYRPGP
Sbjct: 653  DIDVDAIPFDDPKIFELMSSGRTAGVFQVESAGMTATIKNMKPTEYKHVVALIALYRPGP 712

Query: 655  IDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD- 711
            +   +V  Y NR NGKE  VS  P +D +L ET G ++YQEQVM I+  + G+S  E+D 
Sbjct: 713  LGAGMVTSYINRMNGKEPAVSYDPRLDGILGETYGTMVYQEQVMLISVEMCGFSKGESDS 772

Query: 712  ------------VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
                        +L   + K    E +   + +++GA KNG  + +A  I++ + +FA Y
Sbjct: 773  RIRKPVAKKKIKMLTDQVFKWSDGEDETIYDHWMNGAEKNGYKREVAQKIWDDVLEFASY 832

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNKSH+A YA++  QTAW+K HYP E++AA +T      +KI  +    R   I ++PP
Sbjct: 833  AFNKSHSAGYAILVMQTAWLKAHYPNEYMAAVLTSYTGKTDKIVHYVSACRHDGIAVLPP 892

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLN 878
             +N    +F      + + LA I+GVG      I+       PF +L DF  RVD+ + N
Sbjct: 893  DINESGTEFTATAEGVRFGLAGIRGVGEGVTEAIIAEREKGGPFKNLHDFVERVDASQAN 952

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLD-----NIQKYAQWVEKNRTNKHENIF----AH 929
            RRV+E+L+  GA D  GY R QL+  +D     NI   A   +K+R     ++F      
Sbjct: 953  RRVIEALIKGGAFDSTGYPRRQLMHFVDRDNPENIIDAAVKRQKDRAAGQTSLFDVFGDV 1012

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES--- 986
            E   F   +        +  ++   E+ VLG Y S HPL  Y+  L K       +    
Sbjct: 1013 EGSGFEVIVPEPDGQEWDRHMKLSFEKEVLGIYVSDHPLRPYEYALAKAREFTLSQIDTG 1072

Query: 987  ------------VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                             G     A MV S  ++ T+ G  +  VT  +   E     FP
Sbjct: 1073 FETMGPAGNAVNQEIPEGKPYWWAGMVSSVSKRVTKNGDPMAIVTLEDMEGEATVVIFP 1131


>gi|315124217|ref|YP_004066221.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315017939|gb|ADT66032.1| DNA polymerase III, alpha subunit [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 961

 Score =  653 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/967 (37%), Positives = 556/967 (57%), Gaps = 46/967 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YSLL+GA  L  +   +      ++A+TD  N+F  ++F Q   A G++PI
Sbjct: 4   FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGVIDFYQTMKAQGLKPI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +  +   D L               + L      GYQ L+ L S+ Y+        R
Sbjct: 64  IGMEAYLHNHDEL-----DDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYY-PR 117

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF----------FNSSQVAEKRLLTFKKLFGD 180
           I    L++  +EGLI  +    G ++                  + A++  L +KK+F D
Sbjct: 118 INKKLLED-HSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKD 176

Query: 181 RLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y  + RH   D+   +  +++L+    + ++ATN++ +  +E   AH+V M +A    
Sbjct: 177 DFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKK 236

Query: 240 VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV-----HAPILP 293
           ++  DR R +  + Y+K+  +M  +F+D+PEA+ENT EIA++C+  L +           
Sbjct: 237 LNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLDLNLGNPTPPNFKFT 296

Query: 294 RFIEKECDDIQKEEENEL---------RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
           R   K+ + I  EE  E                GLE RL           ++Y+QRL+ E
Sbjct: 297 REYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEERLK---FIDESKHEEYKQRLEVE 353

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
           +N+I  MKFSGY LIV DFI+ AK   IPVGPGRGS AGS+ +Y L ITD+DP+ +SLLF
Sbjct: 354 INIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLF 413

Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
           ERFLNP+R+SMPD D+DFCQDRR EVI YV +KYG ++VAQ+ITFG L AK  +RDV R 
Sbjct: 414 ERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARV 473

Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
             M     D L KL+P +    +       + + +E     P    + E ++ LEGL R+
Sbjct: 474 CDMSIQDADELAKLVPEELKITLDAA-YEKEPKIKEFIDRHPKGPEVWEYARALEGLNRN 532

Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
           A  HAAG+VI +  L +  P++R  ++D    VTQ++   +E   LIKFDFLGLKTLT++
Sbjct: 533 AGMHAAGVVISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVI 592

Query: 583 QKSLDFLAQRGVKVDLS-LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
             ++  + +R  K  +   I  +D + Y  + +  TLGIFQ+ES GM+     ++P+  E
Sbjct: 593 NNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFE 652

Query: 642 DIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
           DIIA+++LYRPGP+++ +   + +RK+G + I      ++ +L+ T GVI+YQEQVMQI 
Sbjct: 653 DIIAVLALYRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIV 712

Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
           Q++ G+SL  ADV+RRAMGKK  E+M K K  F  GA K G  +  A +++EL+ KFA Y
Sbjct: 713 QIIGGFSLGGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGY 772

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
           GFNKSH+AAYA+I++QTA++KT+YP EF+AA +T E +NV+KI  +  + ++ NI+++PP
Sbjct: 773 GFNKSHSAAYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPP 832

Query: 820 SVNTPCVDFKV----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
           S+N    +F      G + I Y L AIK VG     +++EA  D  F  + DF  ++D  
Sbjct: 833 SINKAIREFSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPT 892

Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
           K+NRR LESL+ AGA D FG++R  L  +++N+ + ++ + + R N   ++F  E+ T  
Sbjct: 893 KINRRTLESLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSG 952

Query: 936 DKITLEK 942
            ++    
Sbjct: 953 VQVNFTP 959


>gi|193212527|ref|YP_001998480.1| DNA polymerase III subunit alpha [Chlorobaculum parvum NCIB 8327]
 gi|193086004|gb|ACF11280.1| DNA polymerase III, alpha subunit [Chlorobaculum parvum NCIB 8327]
          Length = 1190

 Score =  653 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/1069 (33%), Positives = 560/1069 (52%), Gaps = 65/1069 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  H+ YS+    +    +           +A+TD   +F+  E   +A  A ++ I
Sbjct: 11   FVHLHTHTHYSMQSSPIFPGELFAACKKQGMTTVAVTDYGAMFNMPELFGQAAKAEVKLI 70

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ +   D                 ++LL+    GY+ +  ++SR            
Sbjct: 71   MGSEIYLAGTDAHDTGRPAT--------LILLIRNDIGYRNMCVILSRAARDGFSNGLPH 122

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +  S L+E  +EGL  L+   SG I R     +   A K    ++ LFG+  Y+ LQ+H 
Sbjct: 123  VDRSVLKEC-SEGLTCLSAAHSGQIGRTLLAGNEAEAAKLAEQYRSLFGEHFYLELQKHG 181

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRV 248
              Y+       ++LA    +PLVATNN  +L   D   +  ++A      + SQ  +   
Sbjct: 182  VPYEELLVPATIRLAEQLGIPLVATNNVHYLDRRDSGCYRAMIANRTKERLNSQNLQCLP 241

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              ++Y K+ SEM ++F +  + L NTV+IA  CS+      P LP+F   E  D    E+
Sbjct: 242  GHENYFKSASEMSALFDNSHDELSNTVKIAEACSYKFVDQDPHLPKFPLPEGFD---SEK 298

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR+    G   +     +  G   ++ ++R++ EL VI +M +S YFLIV+D I  ++
Sbjct: 299  GYLRHLTWEGARNKY---GVEDGAIPEEVKERIELELGVIEKMGYSAYFLIVSDLIAASR 355

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +    VGPGRGS AGS+ AY   IT IDPL++ LLFERFLNP+R+SMPD DIDF    + 
Sbjct: 356  EMGYSVGPGRGSAAGSIIAYLTGITRIDPLKYKLLFERFLNPERISMPDIDIDFTPVGKQ 415

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            +V+ Y   KYG E VA+++  G+L AKAA+RD GR L +P   VD+L KL+P+ P   + 
Sbjct: 416  KVLDYTVQKYGAESVAKVVAIGTLGAKAAIRDAGRVLDVPLKAVDQLAKLVPSKPGTSLK 475

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR- 547
              A  +    +    +DP   +L++ ++ +EG  R+ S HA  +VI D  L + VP+Y  
Sbjct: 476  -DAFKEVKELKRLVDSDPQYQQLMQYARAMEGRARNVSMHAGAVVITDGALEEQVPLYVS 534

Query: 548  -------------------------DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
                                            VTQF+   IE+AGL+K D+LGL+TL ++
Sbjct: 535  NKIETEERKYADEFDQNDIDGTKAESSDEKQVVTQFDKNCIEQAGLLKIDYLGLETLAVI 594

Query: 583  QKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
             ++L  + +R  + ++L  +P DD +T+ +       GIFQ ESSGM+  +  +QP  I 
Sbjct: 595  DETLRLIKKRHGIDIELEKVPMDDRQTFRIFQEGKMAGIFQFESSGMQSYMTRLQPTTIG 654

Query: 642  DIIALVSLYRPGPI--------DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
            DIIA+ +LYRPG +        + + ++ +RK+G+E+I  +HP+++ +LKET GVI+YQE
Sbjct: 655  DIIAMSALYRPGALNAVIDEHRNAVDLFVDRKHGREEIDYMHPMLEEILKETYGVIVYQE 714

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            QVMQI+Q++  +SL +AD LR+AMGKK    M K KE F+ GA    +++ +A  IF+L+
Sbjct: 715  QVMQISQVMGRFSLGKADNLRKAMGKKNPALMQKFKEEFVQGAVSIDVNEALATRIFDLM 774

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
            A+FA YGFNKSH+AAY V++Y T ++K HY +EF+ A +  E+ + E++K    +A+ F 
Sbjct: 775  AEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFVTAILNSEIGDTERMKHLTDEAKGFG 834

Query: 814  IQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIMEA---SADKPFDSLE 866
            I  +PPS+N     F V +++    I   L+AIK VG   AR ++ A      KPF +L 
Sbjct: 835  IFTLPPSINQSDALFSVDEHKGKPCIRVGLSAIKQVGNG-ARAVVAARLRRDGKPFANLF 893

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            D  + VD + +NR+ LE L+ AGALD    +R +LL ++D   K+ Q   K  T      
Sbjct: 894  DLTASVDLRAMNRKALECLIQAGALDEIDPNRGKLLANVDKAIKFGQIQNKAVTLGQGGF 953

Query: 927  FAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            F  +       I   +         S + ++E+R++GFY S HPLD Y+           
Sbjct: 954  FNDDFSNEQAGIYYPELDNGEPMPESEKLQHEKRLVGFYLSHHPLDRYRRDWEAFANLTL 1013

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +          +   ++VS +  + RKG ++ +    +   + +   F
Sbjct: 1014 -DMREVTPSKLYKTIGVIVSVKPYQDRKGKQMLFGVLEDFTGKADFTVF 1061


>gi|189346342|ref|YP_001942871.1| DNA polymerase III, alpha subunit [Chlorobium limicola DSM 245]
 gi|189340489|gb|ACD89892.1| DNA polymerase III, alpha subunit [Chlorobium limicola DSM 245]
          Length = 1189

 Score =  653 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1071 (34%), Positives = 564/1071 (52%), Gaps = 62/1071 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VH+ YS+    +    +          ++A+TD  ++F+  E    A  A ++ I
Sbjct: 3    FVHLHVHTHYSMQSSPVFPGELFSACRQLGMKSVAVTDYCSIFNMPELFSDAKKADVKLI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +L +     L+     +      PSI+LLV +  GY+ L  L+SR         +  
Sbjct: 63   IGTELFL-----LESATHSQAKNTFSPSIILLVQSEAGYRNLCVLLSRASREGFINGTPH 117

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +    L++   +GLI L+  SSG I RA    S   AE     +K +FGD  Y+ LQRH 
Sbjct: 118  LESRLLED-HHDGLICLSAYSSGRIGRALLAGSLHEAETVTGYYKDIFGDNFYLELQRHA 176

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRV 248
              +D    +  + LA    + LVATNN  +L  +D   +  ++A      + SQ  +   
Sbjct: 177  TSFDDKLNAATIALAEKFSVELVATNNVHYLDRKDSGCYRAMIANRTKEKLSSQNLQALP 236

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              +HYLK   EM  IF D   AL N+  IA +C+++ +   PILP +   +  D   +E 
Sbjct: 237  GSEHYLKTAEEMARIFPDNGSALANSARIAEKCTYVFKKKEPILPHYRLPDGFD---DEA 293

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR+    G   + A G+ A G   +D R R++ EL VI +M FS YFLIV+D I  ++
Sbjct: 294  KYLRHLTWEGAAEKYA-GSEADGITEEDVRARIELELGVIEKMGFSSYFLIVSDLISASR 352

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +    VGPGRGS AGS+ AY   IT IDPL++ LLFERFLNP+R+SMPD DIDF    + 
Sbjct: 353  RMGYSVGPGRGSAAGSIVAYLTGITRIDPLKYKLLFERFLNPERLSMPDIDIDFTPVGKQ 412

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            +V+ Y   KYG + VA+++  G+L AKAA+RD GR L++P   VDRL KL+P  P   + 
Sbjct: 413  KVLEYTVEKYGDQSVAKVVAIGTLGAKAAIRDAGRVLEVPLPIVDRLAKLVPTKPGITLE 472

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
               I++    ++   + P   +LLE ++ LEG  R+ S HA  +VI D PL + VP+Y  
Sbjct: 473  KA-ISEVRDLKQFVESSPENLKLLEYARALEGRARNVSMHAGAVVITDGPLEEQVPLYVS 531

Query: 549  V-----------------------------RSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
                                               VTQF+  WIE AGL+K D+LGL+TL
Sbjct: 532  NKIETEVRKYADEIDLDETVQIGVKGADGVDEKQIVTQFDKNWIETAGLLKIDYLGLETL 591

Query: 580  TLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
             ++ ++L  + +R     DL  +P +D +T+ +       GIFQ ESSGM+  +  +QP 
Sbjct: 592  AVIDETLHLIRRRHNIDIDLEKVPMNDRKTFRIFQEGKMAGIFQFESSGMQNYMTRLQPT 651

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNR--------KNGKEKIVSIHPLIDPMLKETQGVII 690
             I DIIA+ +LYRPG ++  +  N          K+G+E I  +HP+++ +LKET GVI+
Sbjct: 652  QIGDIIAMSALYRPGALNARIDENRNAVDLFVDRKHGRESIDYMHPMLEEILKETYGVIV 711

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVMQI+Q++ G+S+++AD LR+AMGKK+ E M++ K  F+SG    G+  T+A  +F
Sbjct: 712  YQEQVMQISQVMGGFSMAKADNLRKAMGKKMPEIMEQFKADFVSGGVAQGVHDTLATRVF 771

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            EL+A+FA YGFNKSH+AAY V++Y T ++K HY  EF+ A +  E+ + +++K    +A+
Sbjct: 772  ELMAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTAEFMTAILNSEIGDTDRMKHLTDEAK 831

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIM--EASADKPFDS 864
             F I  +PPS+N     F + D++    I   L+AIK VG   AR ++       + F +
Sbjct: 832  SFGIMTLPPSINKSDTLFAIEDDKGKPCIRVGLSAIKQVG-GAARAVVTSRLRKKRDFLN 890

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            L D  + VD + +NR+ LE L+ AG+ D    +R +LL ++D   K+ Q   ++ T    
Sbjct: 891  LFDLTASVDLRVMNRKALECLILAGSFDELDSNRAKLLANVDKAIKFGQMQNRSVTLGQC 950

Query: 925  NIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
              F  E G   + +             S +   E++++GFY S HPL  Y          
Sbjct: 951  GFFTSEAGGTGEDVHYPDLDPADPMPESEKLLQEKKLVGFYLSRHPLSPYHRDWEAFATL 1010

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +         ++  ++VS +  + RKG  + +    +   + +   F
Sbjct: 1011 QLN-AKEVTPARQYKVIGLIVSIKPHQDRKGKAMLFGALEDFTGKADFTVF 1060


>gi|148244870|ref|YP_001219564.1| DNA polymerase III alpha subunit [Candidatus Vesicomyosocius okutanii
            HA]
 gi|146326697|dbj|BAF61840.1| DNA polymerase III alpha subunit [Candidatus Vesicomyosocius okutanii
            HA]
          Length = 1141

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/1039 (36%), Positives = 598/1039 (57%), Gaps = 39/1039 (3%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL   S +S+    + ++  ++K+      +IA+TD +NLF+A++F QKA AA I
Sbjct: 3    NPGFVHLHCQSEFSVENSVVRISKFIEKVQEIGMDSIALTDESNLFAAVKFYQKATAANI 62

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PI G +++I  ++              + S +LL    +GY  L EL+S  Y   +  +
Sbjct: 63   KPIFGARINIKDKEG------------ELYSGLLLCQDHQGYLNLSELISLSYTQGRSCE 110

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             V I    L +   +GLIM+       + +    N    A+++   ++ +F DR Y+ +Q
Sbjct: 111  RVSITQQELIDY-NQGLIMIATPIYSDVAKYLISNKIVKAKQKSEFWQAIFVDRYYLGVQ 169

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R  R +D       ++LA    + +VATN+  FL+E D++AH+  + ++  +++    R 
Sbjct: 170  RTSRKFDEKHLHLCIKLALELGIAVVATNDVQFLNESDFDAHEARICISQGSLLDDTQRK 229

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R  +   +LK+  +M  +FSDLPE LENT+E+A+RC+   ++                  
Sbjct: 230  RHFSNQQFLKSPKQMYKLFSDLPEILENTLELAKRCNVHFELFKKNYLP---DFPIPEHL 286

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E     ++  GL  RL    +        Y+QRL FEL++I +M FSGYFLIVADFI+
Sbjct: 287  TIEQFFSEESEGGLVQRLKNLKVDVN----IYQQRLKFELDIIIQMGFSGYFLIVADFIK 342

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            W+K+N+IPVGPGRGSGAGS+ AY L IT++DP++  LLFERFLNP+R+SMPD DIDFC D
Sbjct: 343  WSKENDIPVGPGRGSGAGSLVAYVLGITNVDPIKHELLFERFLNPERVSMPDLDIDFCTD 402

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI YV  +YGHE+V+QIIT+G++ AK  +RDVGR L  PY   D++ K+IPND   
Sbjct: 403  RRDEVIGYVAKRYGHEKVSQIITYGTMAAKGVVRDVGRVLGHPYGFSDQISKMIPNDLRA 462

Query: 486  PVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             +       +       R    ++ SV  L+++S++LEGL R+  THA G+VI    +S 
Sbjct: 463  TLEKALSEPEKGGSKELRARYDSEESVTALIDLSKQLEGLVRNVGTHAGGVVIAPSKISD 522

Query: 542  LVPMYRDVRSDL-PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA---QRGVKVD 597
              P+Y+    +   V+QF+   +E  GL+KFDFLGL  LT++ K++  ++        ++
Sbjct: 523  FCPVYKGYGENNSVVSQFDKDDVEAVGLVKFDFLGLSNLTVIHKAIKLISVKGLSDEPIN 582

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  +P DD   Y LL +  T G+FQLES GMR  L+ +Q D  EDI+A+++LYRPGP+D 
Sbjct: 583  LDALPLDDKRVYKLLQSCDTTGVFQLESKGMRSYLKKLQADNFEDIVAMLALYRPGPLDA 642

Query: 658  IVVYNNRKNGK-EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +V +        ++   HP+++ +LK T GV +YQEQVM+ AQ+++GYSL  AD+LRRA
Sbjct: 643  GMVDDYINVKHGAQVKYPHPMLEQILKPTNGVFLYQEQVMKSAQVMAGYSLGGADLLRRA 702

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            MGKK   EM++Q+  F+ GA++ GI++  A  IF+L+ KF+ YGFNKSH+ AYA +SY T
Sbjct: 703  MGKKKASEMNRQRSVFVKGAAERGINEKKANEIFDLIDKFSGYGFNKSHSVAYAYVSYHT 762

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRI 835
            AW+K+HYP  F+AA ++  MD+ +++     + RQ  + +  P+V     +F +   N +
Sbjct: 763  AWLKSHYPAPFMAAVLSGVMDDTDRVSFTISEIRQMGLIVNGPNVCESNYEFSILDKNTV 822

Query: 836  YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             Y L AIKGVG      ++ E S +  +  L +FCSR++ + LN+R +E+L+++GA D  
Sbjct: 823  LYGLGAIKGVGVALVDAVVFERSTNGTYKDLFEFCSRIEKRYLNKRAIEALIYSGAFDIL 882

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            G +R  L+++     + A+  + +  +    +F+H       +         +   R + 
Sbjct: 883  GVNRESLIKTYPIAIRQAEQKQSDYFSGQNGLFSH----NEYETRYLLAPSFSFKKRLQL 938

Query: 955  EQRVLGFYFSGHPLDVYK-PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            E+ VLG+YF  HP + Y    L+ + +      V   +  ++R+ A++   + +  + G 
Sbjct: 939  EKSVLGYYFDNHPTNEYTVADLKNINVVLPSNIV-FRKNRDVRVLALISDLRYRSIKNGE 997

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            RI  +T  + +    A  F
Sbjct: 998  RIALITIEDGSASLNAVVF 1016


>gi|217964278|ref|YP_002349956.1| DNA polymerase III subunit alpha [Listeria monocytogenes HCC23]
 gi|217333548|gb|ACK39342.1| DNA polymerase III subunit alpha [Listeria monocytogenes HCC23]
          Length = 1108

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/1028 (35%), Positives = 574/1028 (55%), Gaps = 41/1028 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + I          QG         ++L+  +  GY  L+++ S +   ++G     
Sbjct: 63   IGMTVTI----------QGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---PE 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   +  LI ++ G+ G I+R     +   A +       +FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENRDGALEAYANLVDIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                    +++   +    +P+VAT N  +L  +D +A +VL A+  +  V     P   
Sbjct: 169  NP---RLFAKIETFSAEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P+++           +D   +A   T E+A RC   + +   +LPRF   E     +   
Sbjct: 226  PNYFTSQEEMERDWQTDFEKQACFETGELADRCHVEIALDQHLLPRFPLTEG----QNAP 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR  A  GL+ R   GA        +Y++RL++EL VI  M F+ YFLIV D I++++
Sbjct: 282  DVLRQTAYDGLKERDLLGA--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  +  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RRD
Sbjct: 334  EAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     + 
Sbjct: 394  EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V +   
Sbjct: 453  QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHE 607
               D  +TQF M  +EK GL+K DFLGL+ L+LL + L      R   + L+ I  +D +
Sbjct: 513  S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNRETPLTLADISLEDKK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK+G
Sbjct: 572  TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++
Sbjct: 632  KEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F
Sbjct: 692  ERIHFVEGAKSKGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVG 846
            +++ ++    N +KI ++  +A+ + I ++ PS+N     F+V +   I YS   I+ V 
Sbjct: 752  MSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVP 811

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
            T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D
Sbjct: 812  TKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965
             + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y S 
Sbjct: 872  AVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ +K
Sbjct: 930  HPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986

Query: 1026 EYEANFFP 1033
            E  A  FP
Sbjct: 987  ELSAVMFP 994


>gi|290894457|ref|ZP_06557416.1| DNA polymerase III [Listeria monocytogenes FSL J2-071]
 gi|290555995|gb|EFD89550.1| DNA polymerase III [Listeria monocytogenes FSL J2-071]
          Length = 1108

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/1028 (35%), Positives = 574/1028 (55%), Gaps = 41/1028 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + I          QG         ++L+  +  GY  L+++ S +   ++G     
Sbjct: 63   IGMTVTI----------QGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---PE 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   +  LI ++ G+ G I+R     +   A +       +FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENRDGALEAYANLVDIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                    +++   +    +P+VAT N  +L  +D +A +VL A+  +  V     P   
Sbjct: 169  NP---RLFAKIETFSAEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P+++           +D    A   T E+A RC   + +   +LPRF  KE     +   
Sbjct: 226  PNYFTSQEEMERDWQTDFEKRACLETGELAERCHVEIALDQHLLPRFPLKEG----QNAP 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR  A  GL+ R   GA        +Y++RL++EL VI  M F+ YFLIV D I++++
Sbjct: 282  DVLRQTAYDGLKERDLLGA--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  +  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RRD
Sbjct: 334  EAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     + 
Sbjct: 394  EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V +   
Sbjct: 453  QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHE 607
               D  +TQF M  +EK GL+K DFLGL+ L+LL + L      R   + L+ I  +D +
Sbjct: 513  S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNRETPLTLADISLEDKK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK+G
Sbjct: 572  TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++
Sbjct: 632  KEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F
Sbjct: 692  ERIHFVEGAKSKGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVG 846
            +++ ++    N +KI ++  +A+ + I ++ PS+N     F+V +   I YS   I+ V 
Sbjct: 752  MSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVP 811

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
            T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D
Sbjct: 812  TKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965
             + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y S 
Sbjct: 872  AVLQYISLLGED--SKGMNLFAEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ +K
Sbjct: 930  HPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986

Query: 1026 EYEANFFP 1033
            E  A  FP
Sbjct: 987  ELSAVMFP 994


>gi|58616909|ref|YP_196108.1| DNA polymerase III alpha subunit [Ehrlichia ruminantium str. Gardel]
 gi|58416521|emb|CAI27634.1| DNA polymerase III alpha subunit [Ehrlichia ruminantium str. Gardel]
          Length = 1122

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 464/1027 (45%), Positives = 666/1027 (64%), Gaps = 41/1027 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ HS YSLL G + ++ +++       PA+A+TD+ NLF +LEFS  A  AG+QPI
Sbjct: 8    FVHLRSHSDYSLLRGMIKIDTLVNLCVQYNMPAVALTDSGNLFGSLEFSDHASNAGVQPI 67

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC + +    N             +  +VLL     GY  +I+LVS  +  +Q  +  R
Sbjct: 68   IGCNIMVHYHGN------------NIGELVLLAKNQAGYNNIIDLVSNSFKGNQSGKLNR 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN--SSQVAEKRLLTFKKLFGDRLYVNLQR 188
            I L+ L ++  +G+I+LTGG  G + +    +     V  K LL     F + LYV LQR
Sbjct: 116  IDLNRLIQL-KDGIIILTGGYEGLLAQLLLRDVIHYNVVNKLLL----AFENNLYVELQR 170

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +    E+ +++ AY   LPLVATN+ LF+ +ED+ A+DVL  ++    V+Q+DR  
Sbjct: 171  HGIKEESIVETTLIKFAYEKNLPLVATNDVLFVKKEDFPAYDVLSCISDGHYVAQEDRKM 230

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T +HY K+  EM S+F D+PEA+ NT+ IA+RCSF+ ++  PILP F         K E
Sbjct: 231  FTAEHYFKSSQEMCSLFHDIPEAIYNTLLIAQRCSFMPEIRKPILPHFPCSSG----KNE 286

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              EL  +A+AGLE RL    +++    + Y +RL +EL+VI  M ++GYFLIV+DFI W+
Sbjct: 287  SQELITQALAGLEKRLKLKNLSEEDMVK-YHERLLYELDVIISMDYAGYFLIVSDFICWS 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+N I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ++R
Sbjct: 346  KRNGIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDRISMPDFDIDFCQEKR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI YV+ KYG   VA IITFG LQA+A LRDVGR +Q+PY QVDR+CK+IP++P  PV
Sbjct: 406  DLVIEYVRKKYG--YVAHIITFGKLQARAVLRDVGRVMQIPYFQVDRICKMIPHNPVRPV 463

Query: 488  S-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +AI  D   ++ R  D +V +LLEIS KLEGLYRH S HAAGIVI DR L +LVP+Y
Sbjct: 464  TLSEAIGMDKNLQKERDDDETVAKLLEISLKLEGLYRHVSIHAAGIVICDRKLEELVPLY 523

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  + LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ +    + +RG  +D+  IP DD 
Sbjct: 524  YDSTAFLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICQLVRERGYVIDIVSIPLDDR 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY +L++  ++G+FQLESSGMR+ +  ++PD I DIIAL+SLYRPGP+DNI VY  RK+
Sbjct: 584  KTYEMLSSGDSIGVFQLESSGMREVISKLKPDNINDIIALISLYRPGPMDNIPVYIARKH 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G EK   IH +++ +LKET GVIIYQEQVM+IA++++GYSL EAD+LRRAMGKKIKEEMD
Sbjct: 644  GLEKPDYIHSILEGVLKETFGVIIYQEQVMEIAKIMAGYSLGEADLLRRAMGKKIKEEMD 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             Q+  FI+GA  NGI++  A  IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +Y +E
Sbjct: 704  NQRRTFINGAVNNGINQEKASYIFDLVAKFAGYGFNKSHAAAYALISYQTAYLKANYTIE 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  ASM L++ + +K++ FC  A+   I I+PP +N   V F +  + I Y+L A+K VG
Sbjct: 764  FFTASMNLDITDKDKLEMFCNQAKLHGISILPPDINYSKVFFVIEGSSIRYALGALKNVG 823

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  ++   +D  ++ + DF  R+ +K +++R+LE+++ AG LD    +R QL +S+ 
Sbjct: 824  QHAAHELI---SDVKYNDIWDFVDRISTKSVHKRMLENIIKAGVLDSIHSNRKQLFESVI 880

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                  ++ + N +    ++F        +   L +        +  NE   +GFY + H
Sbjct: 881  LFLDIIEYNKYNSSFNQISLFND-----KNHYKLVETDDWTKEEKLYNEFSSIGFYLNNH 935

Query: 967  PLDVYKPILRKMGIKGYE-ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            P+  Y+ +L K+ I     ++ +        +A ++ + + + +    +   VT S+P  
Sbjct: 936  PMQSYQDLLDKLNIGFINYDNKSAYNNK---VAGVISNIRVR-SANRDKFALVTLSDPNN 991

Query: 1026 EYEANFF 1032
             +E  F+
Sbjct: 992  IHEIAFY 998


>gi|148653037|ref|YP_001280130.1| DNA polymerase III subunit alpha [Psychrobacter sp. PRwf-1]
 gi|148572121|gb|ABQ94180.1| DNA polymerase III, alpha subunit [Psychrobacter sp. PRwf-1]
          Length = 1203

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1067 (35%), Positives = 594/1067 (55%), Gaps = 74/1067 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL +HS +S+ +  + +  ++   AAD Q A+A+TD +NL++ ++F +    A I+P
Sbjct: 2    AFVHLGIHSEFSITDSIIRIKPMVKAAAADGQMALALTDLSNLYATVKFYRACLDAAIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD----QG 125
            IIG ++ +D +                  + LL    EGYQ +  +VS  +         
Sbjct: 62   IIGAEIILDDEH---------------TRLTLLAMNNEGYQSITRIVSLGFTDGRMNPDN 106

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            + +  +  + L +  + G+I+L       + +A    + +   + +  ++ +FGDRLY  
Sbjct: 107  RGTPIVNKAHLLD-NSAGVIVLF-TEKSDVGQALLGANPERGHQLISEYQAVFGDRLYFA 164

Query: 186  LQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            ++R  R  +     Q +     H +  VA N+  FL EED++AH+  + +A S V++  +
Sbjct: 165  IKRTKRALEDTFIEQAILAGQRHGIATVAHNDVRFLEEEDFDAHEARVCIASSHVLADPN 224

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            RP   + + YLK +++M  +FSD+P+ ++NTV +A+RC+  L +   +LP F   E + I
Sbjct: 225  RPHDYSSEQYLKTQAQMTELFSDIPQVVQNTVILAQRCNVTLTLGINVLPEFPVPEGETI 284

Query: 304  QKEEENELRNKAVAGLE------VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                E+  R ++  GLE        +++         + Y +RL+ ELN+I  M F GYF
Sbjct: 285  ----ESFFRAESQRGLEARLDKLYPVSERDETWPEIRRPYDERLEHELNIILEMGFPGYF 340

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV DFI+WAK N +PVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 341  LIVMDFIRWAKANGVPVGPGRGSGAGSLVAYALNITDLDPLHYDLLFERFLNPERVSMPD 400

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFC + RD VI YV ++YG E V+QIITFG++ AKA +RDV R     Y   D++ K
Sbjct: 401  FDIDFCIEGRDRVIEYVASQYGREAVSQIITFGTMAAKAVVRDVARVQSKSYGLADKISK 460

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQKLEGLYRHASTHAAGI 532
            LIP  P   +    +  + + ++      ++D      + E++ KLEG+ R+   HA G+
Sbjct: 461  LIPKTPGISLKDALLE-EPQLKDLLSNPDNMDYEDANEIWEMAIKLEGITRNVGKHAGGV 519

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            +I    ++    +Y D      V+QF+   +E  GL+KFDFLGL+ LT++  ++  + +R
Sbjct: 520  LIAPNKITDFSAIYCDE-EGHRVSQFDKDDVESVGLVKFDFLGLRNLTVINAAVKNINER 578

Query: 593  GVKVD-----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
              + +     L  +P DD   Y LL    T  +FQLESSGM++ L  +QP  IED+IA+ 
Sbjct: 579  RARENKPALELEDLPLDDTNAYKLLQDAKTTAVFQLESSGMKKYLAKLQPTNIEDVIAMC 638

Query: 648  SLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +LYRPGP+D  +V  Y +RK+G+E++V  HP ++P+L+ T GVI+YQEQVMQI+Q+++GY
Sbjct: 639  ALYRPGPLDAGMVEMYIDRKHGREEVVYDHPNLEPILENTNGVIVYQEQVMQISQVMAGY 698

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            SL  AD+LRRAMGKK  EEM KQ++ F++GA+  GI   I+  +F+L+ KFA YGFNKSH
Sbjct: 699  SLGGADMLRRAMGKKKPEEMAKQRDIFVTGATAQGIDPVISGGVFDLMEKFAGYGFNKSH 758

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTP 824
            +AAY V++YQTA++K +YP EF+AA +T +M+N + +  F  D R+  ++ +  PSVN  
Sbjct: 759  SAAYGVLAYQTAYLKYYYPAEFMAAVLTSDMNNTDNVVFFINDCRENFDLSVDNPSVNRS 818

Query: 825  CVDFKVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVL 882
               F       I Y L AIKGVG      I+        F  L DFC RVD KK+N+R L
Sbjct: 819  EWHFVADTPTNIIYGLGAIKGVGEGAVDSIVQARRQGGKFTDLYDFCRRVDIKKVNKRTL 878

Query: 883  ESLVFAGALDCFGYS-------------RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            E+L+ +G  D F  +             R  L+  L +  + A+   +N      ++F+ 
Sbjct: 879  EALIKSGCFDDFAITQRPDLAADERHQIRGALMAQLPSAVQAAEQERQNNEMGMMDLFSE 938

Query: 930  EKGTFSDKITLEKFS--VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEES 986
                 +    L   S  +     R + E+  LG Y +GHPLD Y+  +         +  
Sbjct: 939  VDNATT-APPLPTDSGLIWGDKHRLKAEKDTLGLYLTGHPLDQYRKEVAVYTSNARLDSL 997

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
              T    +   A +++          G+R   +T  +     E + +
Sbjct: 998  ADTGYNGSTFFAGLIMDI-----ANFGNR-CVITLDDGTARLEVSCY 1038


>gi|110597394|ref|ZP_01385681.1| DNA polymerase III, alpha subunit [Chlorobium ferrooxidans DSM 13031]
 gi|110340938|gb|EAT59409.1| DNA polymerase III, alpha subunit [Chlorobium ferrooxidans DSM 13031]
          Length = 1191

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/1076 (34%), Positives = 573/1076 (53%), Gaps = 68/1076 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ YS+    +    +    A     ++A+TD   +F+  E   +A  AGI+ 
Sbjct: 2    DFVHLHAHTHYSMQSSPIFPGELFSAAAGFGMKSVAVTDYCAIFNMPELFYEAKNAGIKL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L +     L+      +  PT PS+VLLV    GY+ L  L+SR           
Sbjct: 62   IIGSELLL-----LESDTHQHSRIPTSPSLVLLVQNDTGYRNLCILLSRAAKDGFVNGMP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I    L+    +GL+ L+  SSG I RA    +   AE     ++++FGD  Y+ LQ+H
Sbjct: 117  HIESRLLEHYH-DGLVCLSAYSSGRIGRALLAGAIDEAETFAAYYQEIFGDNFYLELQQH 175

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247
            +  +D     + + LA    + LVATNN  +L  +D   +  ++A      + SQ  +  
Sbjct: 176  QAPFDEKLNRETIALAEKLSIELVATNNVHYLERKDAGCYRAMVANRTKEKLSSQNLQAL 235

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               DHYLK+  EM  +FSD    L N++ IA +C++      P+LP F   E     ++E
Sbjct: 236  AGSDHYLKSSDEMSRLFSDEHRELSNSLLIAEKCTYTFCQKEPVLPHFPLPEGF---QDE 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L +    G + + A  + A+G   ++ + R++ EL VI +M FS YFLIV+D I  +
Sbjct: 293  FTYLSHLTWEGAKEKYA-DSEAEGISKEEVKSRIELELGVIEKMGFSSYFLIVSDLIAAS 351

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +     VGPGRGS AGS+ AY   IT IDPLR+ LLFERFLNP+R SMPD DIDF    +
Sbjct: 352  RTLGYSVGPGRGSAAGSIVAYLTGITRIDPLRYKLLFERFLNPERSSMPDIDIDFTPVGK 411

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +V+ Y   KYG E VA++I  G+L AKAA+RD GR L++P   VD+L KL+P  P   +
Sbjct: 412  QKVLEYTVEKYGTESVAKVIAIGTLGAKAAIRDAGRVLEVPLPLVDKLAKLVPTKPGITL 471

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A+ + +  ++   + P +  L+  ++ LEG  R+ S HA  +VI   PL + VP+Y 
Sbjct: 472  E-KALHESNELKQFSESSPEIRELVRYARALEGRARNVSMHAGAVVITSGPLEEQVPLYV 530

Query: 548  DV-----------------------------RSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                                                VTQF+  WIE AGL+K D+LGL+T
Sbjct: 531  SNKIETEVRKFADEIDLDEPGPGSMKGSDGVDEKQLVTQFDKNWIETAGLLKIDYLGLET 590

Query: 579  LTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            L ++ ++L  + +R    ++L  +P +D +T+ +       GIFQ ESSGM+  +  +QP
Sbjct: 591  LAVIDETLRMIKRRYDLDIELEKVPMNDRKTFKIFQEGKMAGIFQFESSGMQSYMTRLQP 650

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNR--------KNGKEKIVSIHPLIDPMLKETQGVI 689
              I DIIA+ +LYRPG ++  +             K+G+E I  +HP+++ +LKET GVI
Sbjct: 651  TQIGDIIAMSALYRPGALNARIDEKRNAVDLFVDRKHGREAIDYMHPMLEEILKETYGVI 710

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI+Q++ G+SL++AD LR+AMGKK+ E M+K K  F+ GA   G+  T+A  +
Sbjct: 711  VYQEQVMQISQVMGGFSLAKADNLRKAMGKKMPEIMEKYKADFVQGAIAQGVHDTLATRV 770

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            FEL+A+FA YGFNKSH+AAY V++Y T ++K HY +EF+ A +  E+ + E++K    +A
Sbjct: 771  FELMAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFMTAVLNSEIGDTERMKHLTDEA 830

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNR------IYYSLAAIKGVGTTTARHIM--EASADKP 861
            + F I  +PPS+N     F V D+       I   L+AIK VG   AR ++  +    + 
Sbjct: 831  KSFGISTLPPSINKSDALFSVEDSDDGRSCSIRVGLSAIKQVG-GAARAVVTSKLRRKRD 889

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F +L D  + VD + +NR+ LE L+ AGA D     R +L+ ++D   K+ Q   ++ T 
Sbjct: 890  FQNLFDLAASVDLRVMNRKALECLILAGAFDEIDQHRARLIANVDKAIKFGQMQNRSVTL 949

Query: 922  KHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
                 F  E+G   ++              + +  +E++++GFY S HPL  Y+   +  
Sbjct: 950  GQCGFFTAEEGALLEEEHYPDMDQAEPMAEAEKLLHEKKLVGFYLSHHPLSPYRRDWQAF 1009

Query: 979  GI--KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   +E +A       ++  ++VS +  + RKG ++ + T  +   + +   F
Sbjct: 1010 TTLQLNAKEIIAA---KQYKVIGVIVSVKPYQDRKGKQMLFGTIEDFTGKADFTVF 1062


>gi|330998876|ref|ZP_08322603.1| DNA polymerase III subunit alpha [Parasutterella excrementihominis
            YIT 11859]
 gi|329576090|gb|EGG57609.1| DNA polymerase III subunit alpha [Parasutterella excrementihominis
            YIT 11859]
          Length = 1148

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1024 (37%), Positives = 595/1024 (58%), Gaps = 30/1024 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   FVHL++H+ +S+ +G L+   ++ K  A    A+AITD   +F  + F + A A
Sbjct: 1    MTQ--DFVHLRMHTEFSIKDGMLNPKKVVHKAIASGMKALAITDATAMFGDVIFYKAASA 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G    I    N                ++ L    +GY  L +L+SR +L +Q
Sbjct: 59   AGIKPILGADCSITNHYNR----------DDYLRLLFLARNHQGYLTLCDLLSRAWLTNQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K    + L W+     +GLI+L+G ++G I +A    SS  AE+      + F    ++
Sbjct: 109  YKDRGEVDLDWITPEMADGLIVLSGFNTGAIGKAILNGSSSAAEQEARRLSQKFP-HFFM 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR  R  D    ++ V+LA    LP+VAT    F + ED+E H+  +A+A    ++ K
Sbjct: 168  ELQRVGRPNDEMLIAESVKLAKKLGLPVVATQPIQFENPEDFEFHEARVAIADGFTLANK 227

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  TP  Y + + EM  +F D+P A+EN+VEIA+RC+  +++  P LP F   +   
Sbjct: 228  ARPRIYTPQQYFRTKEEMCELFKDIPSAIENSVEIAKRCNVTIKLGKPQLPIFPTPDGMS 287

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            + K+   +L  + +      L      +      Y++RL+ E+ +I  M F GYFLIV D
Sbjct: 288  L-KDYMAQLAREGLDRRLKVLYPDEKKREAAFPRYKERLEREIKIIQDMDFPGYFLIVQD 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 347  FINWAKTHGCPVGPGRGSGAGSLVAYSLGITDLDPLAYDLLFERFLNPERVSMPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ+ R  VI YV++KYG E V+QI TFG++ AK  ++DVGR L M YS+ DRL ++IP  
Sbjct: 407  CQNNRGRVIEYVKSKYGEESVSQIATFGTMGAKGVIKDVGRVLDMSYSEADRLSRMIPTR 466

Query: 483  PAH-PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P H     +A++++ +FR     +P   +L+E + KLEG  R    HA G++I    L  
Sbjct: 467  PGHNTTLEEALSEEPQFRAEVRNNPQARKLIEYALKLEGTTRSLGIHAGGVLIAPGKLID 526

Query: 542  LVPMYRDVR-SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
              P+Y      +  ++ ++ K +E  GL+KFDFLGL TLT+++++LD++ +   V+ D+ 
Sbjct: 527  FCPLYAAGMLPENVISMYDKKDVEAVGLVKFDFLGLTTLTIIERALDYIEKNIGVRPDIE 586

Query: 600  LIPFDDHETY-HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             +  DD +TY  +  T  T+ +FQ ES GM + L   +P  + D+IAL +LYRPGP+D I
Sbjct: 587  HMECDDEDTYKKIFQTGDTVAVFQFESPGMHKLLIDAKPTQLSDLIALNALYRPGPMDLI 646

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + + + G++K     P + P+L++T G+++YQEQVM +AQ + GYSL  AD+LRRAMG
Sbjct: 647  PDFLDIRAGRKKAEYADPRLIPILEDTAGIMVYQEQVMLVAQKIGGYSLGGADILRRAMG 706

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK   EM++Q + FI GA+KNG+S+ +A ++FEL+ KFA YGFNKSHAAAY+ ++Y+T W
Sbjct: 707  KKDVAEMERQSKVFIEGAAKNGVSEEVAAHLFELMRKFAGYGFNKSHAAAYSYVAYKTGW 766

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYY 837
            +K +YP EFLA+S++  M + EK  K   DA++ +++++ P +N    ++       I  
Sbjct: 767  LKNYYPAEFLASSLSEVMTDPEKSLKILMDAKRHSVKLLGPDINESEFNYTSPKTMEIRM 826

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L A+KGVG+  A  I      + PF    D   RV S+ + +++++    AG  D    
Sbjct: 827  GLGALKGVGSAPAEAIKAEREQNGPFKDPFDLVKRVGSQLITKKIIQVFAMAGVFDSIEP 886

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R +  ++ D + + AQ  E  +     ++F  E    S+++ +++ +  +   R E EQ
Sbjct: 887  NRRKWFENADVVVQSAQ--ENEKAADQFSLFGEEP---SNEVPIKEVAPWSDRTRMEKEQ 941

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             VLGFYFSGHPL+ Y+  L++           +       +A M +  +Q++ + GS   
Sbjct: 942  YVLGFYFSGHPLEAYQSELKR-NFGALVAGTESENPGEYLVAGMYLGCEQRRGKDGSP-- 998

Query: 1017 WVTF 1020
            +VT 
Sbjct: 999  FVTL 1002


>gi|229814931|ref|ZP_04445269.1| hypothetical protein COLINT_01974 [Collinsella intestinalis DSM
            13280]
 gi|229809418|gb|EEP45182.1| hypothetical protein COLINT_01974 [Collinsella intestinalis DSM
            13280]
          Length = 1272

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/1146 (30%), Positives = 544/1146 (47%), Gaps = 128/1146 (11%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            Q++    +FVHL  H+ YS+L+GA  + +++ +      PA+AITD   ++   E     
Sbjct: 4    QHM----AFVHLHNHTVYSMLDGATRIKDMVSRAVELGMPAVAITDHGYMYGVPELGLAC 59

Query: 63   CAAGIQPIIGC-------------------QLDIDMQD-----------NLKMTNQGKTP 92
             A       G                    +L+   Q+           +L M ++    
Sbjct: 60   DAVN----HGTPEYKVWSHDKSFLEKGRRDELECPDQESDPRGYEQHMKDLAMWDEKGNI 115

Query: 93   FPTVPSIVL---------------LVSTA--------------EGYQRLIELVSRMYLLD 123
                P +V+               L                  +GY  L++ VS    + 
Sbjct: 116  DELKPPLVIKPIFGCEVYFTPDETLARDRKPELYHMVLFAQNEKGYVNLMQTVSEA-AVQ 174

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRL 182
                  R+ L  L+    EGLI  +   +G I +         A +   TF+  F     
Sbjct: 175  GFYYKPRVTLDNLRR-HREGLIASSACIAGIIPKCIDRGEMATAIEWAETFRDTFEPGNF 233

Query: 183  YVNLQRH------RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            Y+ +Q H         D      ++Q+A    + ++ATN+  +L+ ED    DV+M +  
Sbjct: 234  YIEIQEHGITTDSGITDEELSRTLIQIAEQVGVKVIATNDFHYLTREDAPVQDVVMCIGT 293

Query: 237  STVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
            ++ +   +R R+   + Y+K   EM ++F   PEA +NTVEIA +C+  L   + ILP +
Sbjct: 294  NSKIDDPNRIRMEGSEFYMKTEEEMRALFPYCPEACDNTVEIAEKCNVELDWDSIILPNY 353

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                  D  +  E++ R +   GL  R       +     D R+R +FE  VI    F+ 
Sbjct: 354  PL---LDPGETHESQFRRECEEGLAKRYGDDWDGREIGGVDIRERFEFEYKVICDKGFAA 410

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIVA++++WAK+N I VGPGRGS AG++ AYA+ IT  DPL   L+FERFL+P+R  M
Sbjct: 411  YFLIVAEYVRWAKQNGIGVGPGRGSAAGALVAYAMDITTFDPLSNGLMFERFLSPERTEM 470

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DF  +RR EVI +V+  YG E+V  +IT+ +++AK A+ D  R L  P     RL
Sbjct: 471  PDIDMDFDDERRLEVIEHVRQLYGPEKVTHVITYSTIKAKQAINDAARVLDYPVYMGQRL 530

Query: 476  CKLIPNDPAHPVSLQAIAD-------DSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
             K++  DP   +                 F EA   D    R+++ +  +EGL R    H
Sbjct: 531  SKMVSADPGVKLKQVLEKQPGKEDLYSPDFVEAYQKDEDARRIIDTALSIEGLTRGEGVH 590

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            A  ++I    +++ VP   D +  + +TQ+    +   GL+K DFLGL+TLT++ K+   
Sbjct: 591  ACAVLICRDAVNEHVPTKLDTKGGVEITQYEGHTVADMGLLKMDFLGLRTLTVISKAKAN 650

Query: 589  LAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            + +   + +D+  IPFDD + + L+++  T G+FQ+ES+GM   ++ M+P   + ++AL+
Sbjct: 651  IKKSFGIDIDVDAIPFDDPKIFELMSSGRTAGVFQVESAGMTATIKNMKPTEYKHVVALI 710

Query: 648  SLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +LYRPGP+   +V  Y NR NGKE  VS  P +D +L ET G ++YQEQVM I+  + G+
Sbjct: 711  ALYRPGPLGAGMVTSYINRMNGKEPAVSYDPRLDGILGETYGTMVYQEQVMLISVEMCGF 770

Query: 706  SLSEAD-------------VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            S  E+D             +L   + K    E +   + +++GA KNG  +++A  I++ 
Sbjct: 771  SKGESDSRIRKPVAKKKIKMLTDQVFKWSDGEDETIYDHWMNGAEKNGYKRSVAQKIWDD 830

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            + +FA Y FNKSH+A YA++  QTAW+K HYP E++AA +T      +KI  +    R  
Sbjct: 831  VLEFASYAFNKSHSAGYAILVMQTAWLKAHYPNEYMAAVLTSYTGKTDKIVHYVSACRHD 890

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR 871
             I ++PP +N    +F      + + LA I+GVG    + I+E      PF +L DF  R
Sbjct: 891  GIAVLPPDINESGTEFTATPEGVRFGLAGIRGVGEGVTQAIIEEREKGGPFKNLHDFVER 950

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD-----NIQKYAQWVEKNRTNKHENI 926
            VDS + NRRV+E+L+  GA D  GY R QL+  +D     NI   A   +K+R     ++
Sbjct: 951  VDSSQANRRVIEALIKGGAFDSTGYPRRQLMHFVDRDNPENIIDAAVKRQKDRAAGQTSL 1010

Query: 927  F----AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
            F      E   F   +        +  ++   E+ VLG Y S HPL  Y+  L K     
Sbjct: 1011 FDVFGDVEGSGFEVIVPEPDGQEWDRHMKLSFEKEVLGIYVSDHPLRPYEYALAKAREFT 1070

Query: 983  YEES---------------VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
              +                     G     A MV    ++ T+ G  +  V   +   E 
Sbjct: 1071 LSQIDTGFETMGPTGNAVNQEIPEGKPYWWAGMVSGVGKRVTKNGDPMAIVQLEDMEGEA 1130

Query: 1028 EANFFP 1033
                FP
Sbjct: 1131 TVVVFP 1136


>gi|21673669|ref|NP_661734.1| DNA polymerase III, alpha subunit [Chlorobium tepidum TLS]
 gi|21646788|gb|AAM72076.1| DNA polymerase III, alpha subunit [Chlorobium tepidum TLS]
          Length = 1190

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/1079 (32%), Positives = 566/1079 (52%), Gaps = 65/1079 (6%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +   L  +  FVHL  H+ YS+    +   ++          A+A+TD   +F+  E   
Sbjct: 1    MQPDLRSALEFVHLHTHTHYSMQSSPIFPGDLFAACKKQGMTAVAVTDYGAMFNMPELFG 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            +A  A ++ I+G ++ +           G        +++LL+    GY+ +  ++SR  
Sbjct: 61   QAKKAEVKLIMGAEIYLA--------GTGSRDSGKPATLILLIRDDIGYRNMCVILSRAA 112

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                      +  S L+E   +GL+ L+   SG I RA    +   A      ++ L+G+
Sbjct: 113  RDGFSNGLPHVDRSVLEEC-RDGLVCLSAAHSGLIGRALLSGNETEAANFANYYRDLYGE 171

Query: 181  RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-T 238
              Y+ LQ+H   Y+       ++L+    +PLVATNN  +L   D   +  ++A      
Sbjct: 172  HFYLELQKHGAPYEEQLVPGTIRLSEQLGIPLVATNNVHYLDRRDSGCYRAMIANRTKQR 231

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            + SQ  +     ++Y K+ +EM  +F +    L+NTV+IA  CS+      P LP+F   
Sbjct: 232  LNSQNLQCLPGHENYFKSAAEMSLLFDNAHGELDNTVKIAEACSYTFINKDPHLPKFPLP 291

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E  D    E+  LR+    G + +      A G   ++ + R++ EL VI +M +S YFL
Sbjct: 292  EGFD---SEKEYLRHLTWEGAKEKY---GAADGTIPEEVKARIELELGVIEKMGYSAYFL 345

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV+D I  ++K    VGPGRGS AGS+ AY   IT IDPL++ LLFERFLNP+R+SMPD 
Sbjct: 346  IVSDLIAASRKMGYSVGPGRGSAAGSIIAYLTGITRIDPLKYKLLFERFLNPERISMPDI 405

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DIDF    + +V+ Y   KYG E VA+++  G+L AKAA+RD GR L +P   VD+L KL
Sbjct: 406  DIDFTPVGKQKVLDYTVQKYGAESVAKVVAIGTLGAKAAIRDAGRVLDVPLKAVDQLAKL 465

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            +P+ P   +   A  +    +     DP   +L++ ++ +EG  R+ S HA  +VI D  
Sbjct: 466  VPSRPGTSLE-DAFREVKELKRLVDTDPQYQQLVQYARAMEGRARNVSMHAGAVVITDGA 524

Query: 539  LSQLVPMYR--------------------------DVRSDLPVTQFNMKWIEKAGLIKFD 572
            L + VP+Y                                  VTQF+   IE+AGL+K D
Sbjct: 525  LEEQVPLYVSNKIETEERKYADEFDQNDIDGTKAESSDEKQVVTQFDKNCIEQAGLLKID 584

Query: 573  FLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            +LGL+TL ++ ++L  + +R  + +DL  +P DD +T+ +       GIFQ ESSGM+  
Sbjct: 585  YLGLETLAVIDETLRLIKKRHGIDIDLEKVPMDDRKTFRIFQEGKMAGIFQFESSGMQSY 644

Query: 632  LEGMQPDCIEDIIALVSLYRPGPI--------DNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            +  +QP  I DIIA+ +LYRPG +        + + ++ +RK+G+E+I  +HP+++ +LK
Sbjct: 645  MMRLQPTTIGDIIAMSALYRPGALNAVIDEHRNAVDLFIDRKHGREEIDYMHPMLEEILK 704

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET GVI+YQEQVMQI+Q++  +SL +AD LR+AMGKK  + M K KE F+ GA+   ++K
Sbjct: 705  ETYGVIVYQEQVMQISQVMGRFSLGKADNLRKAMGKKDPKLMQKFKEEFVEGAASIDVNK 764

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +A  IF+L+A+FA YGFNKSH+AAY V++Y TA++K HY +EF+ A +  E+ + E++K
Sbjct: 765  ALATRIFDLMAEFAGYGFNKSHSAAYGVLAYWTAYLKAHYTIEFITAILNSEIGDTERMK 824

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIMEA--- 856
                +A+ F I ++PPS+N     F V +++    I   L+AIK VG   AR ++ A   
Sbjct: 825  HLTDEAKGFGIFMLPPSINKSDALFSVEEHKGRPCIRVGLSAIKQVGGG-ARAVVAARLR 883

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
               KPF +L D  + VD + +NR+ LE L+ AGALD    +R +LL ++D   K+ Q   
Sbjct: 884  RDGKPFLNLFDLTASVDLRAMNRKALECLIQAGALDEIDPNRGKLLANVDKAIKFGQIQN 943

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
            K  T      F  +       +             S + + E+R++GFY S HPLD ++ 
Sbjct: 944  KAVTLGQGGFFNDDFSDGQAGVHYPDLDNAEPMPESEKLQYEKRLVGFYLSHHPLDRFRR 1003

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                       +          +   ++VS +  + RKG ++ +    +   + +   F
Sbjct: 1004 DWEAFASLTL-DKRDVTPSKLYKAIGVIVSVKPYQDRKGKQMLFGVLEDFTGKADFTVF 1061


>gi|241667125|ref|ZP_04754703.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
            philomiragia ATCC 25015]
 gi|254875679|ref|ZP_05248389.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC
            25015]
 gi|254841700|gb|EET20114.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC
            25015]
          Length = 1159

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1045 (36%), Positives = 585/1045 (55%), Gaps = 45/1045 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL++H+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A + G++PI
Sbjct: 2    FSHLRIHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALSNGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSV 129
             G +L ID +  +               +VLL    +GYQ ++ LVS+ Y   D+     
Sbjct: 62   FGVELKIDTEFGV-------------CDLVLLAENNQGYQNIVNLVSKAYQEADRFGSIP 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
             I   WL++I    +I L GG +G + +A         E+ +     +FG D   + + +
Sbjct: 109  LIPKDWLKDINLANVICLNGGQNGELGKAILAKDDIRVEEIISENIAIFGRDNYIIEIHK 168

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                 +     + ++ A  H L  VATN ++F+  +DY+ H++   +   T +  + R  
Sbjct: 169  LEYENEGLYNEKALEFASKHNLIAVATNLTVFMESDDYDIHEIRACINEKTTILDESRKS 228

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + T + YLK+  EM   FS+LP  LENT+ IA+RC+    +  P LP     +       
Sbjct: 229  KFTREQYLKSADEMYQTFSELPVLLENTLVIAKRCNVTFDLGKPCLPTVDIPDG----LT 284

Query: 307  EENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            E          GL+ RLA+           +  + Y+ RL  E+++I  M F GYFLIV 
Sbjct: 285  EREYFSKLCYQGLDKRLAKILENRPVDKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVE 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDID
Sbjct: 345  DFIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDID 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC   RD VI+YV+ KYG + V QIIT+G++ AK  +RDV R +   +   DR+ KLIP 
Sbjct: 405  FCIQGRDRVIKYVEQKYGKQSVGQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPE 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P           +    +   AD  V  ++E +QKLEGL R    HAAGIVI    +S 
Sbjct: 465  TPGTTFKKILHEGEP-LYDEMQADEEVAEIVEKAQKLEGLPRSLGKHAAGIVISPTVISD 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----D 597
              P+Y + +    VTQF+   +E  GL+KFDFLGLK LT+++ ++  +  +        D
Sbjct: 524  FAPVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIIKNAIASINAKRSANEVPLD 583

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +S IP DD +T+ LL    T+GIFQLES GM+Q ++ +     E+IIALV+LYRPGP++N
Sbjct: 584  ISDIPLDDEKTFKLLQAGKTIGIFQLESQGMQQIVKDLGTSNFEEIIALVALYRPGPMEN 643

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  + +RK+G+++ + +HPL++ +L+ET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAM
Sbjct: 644  IPTFVDRKHGRKQTIYLHPLLEEVLRETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAM 703

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTI-AVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            GKK  EEM++Q++ F  GA+K    +   A  IF+ +  FA YGFNKSHAAAYA+I+YQT
Sbjct: 704  GKKKPEEMEQQRKIFKEGAAKYHNIEAGLADEIFDQMEAFAGYGFNKSHAAAYALIAYQT 763

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRI 835
            AW+K HYP E++AA M+ +M N +++ KF  DA+   I ++ P+VN    D        I
Sbjct: 764  AWLKAHYPDEYMAALMSGDMGNTDQLVKFILDAKNMGITVLAPNVNKSVYDCIAASKGTI 823

Query: 836  YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
               L AIKG+G+   + I+        F S+ D   RVD +K+N++ LE+L FAGA+   
Sbjct: 824  LLGLGAIKGLGSEAIKSILNEREVGGEFSSIFDLTRRVDLRKVNKKALEALCFAGAIKDI 883

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVR 951
              +R     S++   K A +V +       ++F   +        LE+       N    
Sbjct: 884  SKNRATAFNSIEKAIKNAGYVNEMAAAGQNDLFGFTEQESDTDTELERECIVEEWNLREL 943

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAA-MVVSKQQ 1006
              NE++ LG YFSGH +D  +   R      + +        + GN++R+ A M+    +
Sbjct: 944  LINEKKALGMYFSGHIIDG-ESHWRNH--VSFSDLEKIQKPNMDGNSVRIIASMITPPAR 1000

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANF 1031
            +KT+ G  +  +   +     +   
Sbjct: 1001 RKTKTGRVLYIINIDDEFDRADCLV 1025


>gi|167626567|ref|YP_001677067.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
            philomiragia ATCC 25017]
 gi|167596568|gb|ABZ86566.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
            philomiragia ATCC 25017]
          Length = 1159

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1045 (37%), Positives = 585/1045 (55%), Gaps = 45/1045 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL++H+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A + G++PI
Sbjct: 2    FSHLRIHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALSNGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSV 129
             G +L ID +  +               +VLL    +GYQ ++ LVS+ Y   D+     
Sbjct: 62   FGVELKIDTEFGV-------------CDLVLLAENNQGYQNIVNLVSKAYQEADRFGSIP 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
             I   WL+ I    +I L GG +G + +A         E+ +     +FG D   + + +
Sbjct: 109  LIPKDWLKNINLANVICLNGGQNGELGKAILAKDDIRVEEIISESIAIFGRDNYIIEIHK 168

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
                 +     + ++LA  H L  VATN ++F+  +DY+ H++   +   T +  + R  
Sbjct: 169  LEYENEGLYNEKALELASKHNLIAVATNLTVFMESDDYDIHEIRACINEKTTILDESRKS 228

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + T + YLK+  EM   FS+LP  LENT+ IA+RC+    +  P LP     +       
Sbjct: 229  KFTREQYLKSADEMYQTFSELPVLLENTLAIAKRCNVTFDLGKPCLPTVDIPDG----LT 284

Query: 307  EENELRNKAVAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            E          GL+ RLA+           +  + Y+ RL  E+++I  M F GYFLIV 
Sbjct: 285  EREYFSKLCYQGLDKRLAKILENRPVDKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVE 344

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DFI+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDID
Sbjct: 345  DFIRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDID 404

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC   RD VI+YV+ KYG + V QIIT+G++ AK  +RDV R +   +   DR+ KLIP 
Sbjct: 405  FCIQGRDRVIKYVEQKYGKQSVGQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPE 464

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P           +    +   AD  V  ++E +QKLEGL R    HAAGIVI    +S 
Sbjct: 465  TPGTTFKKILHEGEP-LYDEMQADEEVAEIVEKAQKLEGLPRSLGKHAAGIVISPTVISD 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----D 597
              P+Y + +    VTQF+   +E  GL+KFDFLGLK LT+++ ++  +  +        D
Sbjct: 524  FAPVYCEDKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIIKNAIASINAKRSANETPLD 583

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +S IP DD +T+ LL    T+GIFQLES GM+Q ++ +     E+IIALV+LYRPGP++N
Sbjct: 584  ISDIPLDDEKTFKLLQAGKTIGIFQLESQGMQQIVKDLGTSNFEEIIALVALYRPGPMEN 643

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  + +RK+G+++   +HPL++ +L+ET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAM
Sbjct: 644  IPTFVDRKHGRKQTTYLHPLLEEVLRETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAM 703

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTI-AVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            GKK  EEM++Q++ F  GA+K    +   A  IF+ +  FA YGFNKSHAAAYA+I+YQT
Sbjct: 704  GKKKPEEMEQQRKIFKEGAAKYHNIEAGLADEIFDQMEAFAGYGFNKSHAAAYALIAYQT 763

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRI 835
            AW+K HYP E++AA M+ +M N +++ KF  DA+   I ++ P+VN    D        I
Sbjct: 764  AWLKAHYPDEYMAALMSGDMGNTDQLVKFILDAKNMGITVLAPNVNKSVYDCIAASKGTI 823

Query: 836  YYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
               L AIKG+G    + I+ E  A   F S+ D   RVD +K+N++ LE+L FAGA+   
Sbjct: 824  LLGLGAIKGLGGEAIKSILNEREASGEFSSIFDLTRRVDLRKVNKKALEALCFAGAIKDI 883

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSSVR 951
              +R     S++   K A +V +       ++F   +        LE+       N    
Sbjct: 884  SKNRATAFNSIEKAIKNAGYVNEMAAAGQNDLFGFTEQESDTDTELERECIVEEWNLREL 943

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLAA-MVVSKQQ 1006
              NE++ LG YFSGH +D  +   R      + +        + GN++R+ A M+    +
Sbjct: 944  LINEKKALGMYFSGHIIDD-ESHWRNH--VSFSDLEKIQKPNMDGNSVRIIASMITPPAR 1000

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANF 1031
            +KT+ G  +  +   +     +   
Sbjct: 1001 RKTKTGRVLYIINIDDEFDRADCLV 1025


>gi|145652210|gb|ABP88150.1| putative DnaE [Borrelia lonestari]
          Length = 1072

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/957 (36%), Positives = 546/957 (57%), Gaps = 19/957 (1%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  +          ++LL     GY+ L++L S  YL +      RI  S +++  +
Sbjct: 1    EFTHIKKNDELGKPYYHLILLAKNELGYKNLLKLTSISYL-EGFYYRPRIDKSDIEKY-S 58

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            +GLI  +    G I +         A+  +L FK +FGD  Y+ LQRH    +     ++
Sbjct: 59   KGLICTSACIGGIIPQLIIAGRFDDAKNEILWFKTVFGDDFYLELQRHGIKQQDMVNKKL 118

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSE 259
            +  +    +PL  +N+S ++++ED +A D+++ +   + ++  +R ++ T + Y+K++ E
Sbjct: 119  IGYSKELNVPLTVSNDSHYVNKEDAKAQDIIICIGTGSKINDPNRLKMETDEFYIKSQEE 178

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F DLPEAL NT+EIA +C           P F E +           L      GL
Sbjct: 179  MYELFKDLPEALANTLEIAEKCDEF--EIKFPGPIFPEYQIPSEFSTLGQYLEYLTFEGL 236

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
            +                 ++R  +EL+ I +M F  YFLIV DFI++A  N IPVGPGRG
Sbjct: 237  K-------FRYDNINDSIKERALYELSTIIKMGFEAYFLIVWDFIKFAHDNGIPVGPGRG 289

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            SGAGS+ AYAL +TDIDPL+++LLFERFLNP+R+SMPDFDIDFC + RDEVI+YV +KYG
Sbjct: 290  SGAGSIVAYALRVTDIDPLKYNLLFERFLNPERVSMPDFDIDFCFEGRDEVIKYVTSKYG 349

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             +RVAQIITFG+L+ KA  +DVGR L +P+S+ + + KLIP+ P   +       D   R
Sbjct: 350  EDRVAQIITFGTLKPKAVFKDVGRVLDIPFSESNEITKLIPDGPKVCLKEVF--ADGALR 407

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
                     + L+  +  LEG+ RH STHAAGIVI    L+  VP+Y+D + +   TQ+ 
Sbjct: 408  AYLNKGSIYNELMNAALVLEGMNRHVSTHAAGIVIAKTALTDYVPLYKDYKQNTVSTQYT 467

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
            M  +E  GL+K DFLGLKTLTL++ +   +        ++ I   D +T+ +L    +  
Sbjct: 468  MDLLEDCGLVKMDFLGLKTLTLIKNAEKLIRITNPDFSIANISDSDPKTFKMLAEGRSAS 527

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            +FQ ES GM+Q L   +PD IED+IAL +LYRPGP+  I  + + K G ++I   HP + 
Sbjct: 528  VFQFESEGMQQVLREAKPDSIEDLIALNALYRPGPMQFIPQFISAKTGIKRIKYPHPDLK 587

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
             +LK T GVI+YQEQVM++A++++G+SL +AD+LRRAMGKK ++EM++ K  FI GA   
Sbjct: 588  DVLKPTYGVIVYQEQVMEVAKIIAGFSLGKADILRRAMGKKKEDEMNRMKVDFIKGAISK 647

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G  +++A++IFELL  FA+YGFNKSHAAAY++I+YQTA++K +YP  F+AA++T E++N 
Sbjct: 648  GYDESLAIDIFELLKPFANYGFNKSHAAAYSLIAYQTAYLKANYPENFMAANLTNEINNT 707

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-A 858
            EK+  + ++A+   I ++ P +N    +F+V D +I Y L  IK +G +    I+     
Sbjct: 708  EKLSYYIEEAKLMGIDVLKPDINQSFKEFRVVDCKISYGLNGIKNIGGSMVDLIIAERQK 767

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
            +  + S EDF  RVD K +N++ LES + +G  D  G +R  L ++LD +       + +
Sbjct: 768  NSEYKSFEDFVRRVDDKVINKKFLESAIKSGLFDSLGQNRRTLFENLDRLIDVVTQDKND 827

Query: 919  RTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
            R     ++F+    +       + + F   +       E+ +LGFY SGHPLD YK  + 
Sbjct: 828  RKFGQNSLFSIFGPQDVAYKSFSYDIFEEYSYIELLGFEKELLGFYVSGHPLDPYKTEIE 887

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGWVTFSEPAKEYEANFF 1032
                    E +A  + + ++ A ++ S +   T++ + ++ +    +     +   F
Sbjct: 888  CFTDFNILEDLAIKKDSTVKFAGILNSIRVIHTKRNNAKMAFAIIEDFKGVMDIVVF 944


>gi|296113397|ref|YP_003627335.1| DNA polymerase III alpha subunit [Moraxella catarrhalis RH4]
 gi|295921091|gb|ADG61442.1| DNA polymerase III alpha subunit [Moraxella catarrhalis RH4]
          Length = 1240

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1087 (35%), Positives = 582/1087 (53%), Gaps = 86/1087 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    AGI+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124
            IIG ++ +         +  K       S++L   +  GYQ L+ L+S  Y         
Sbjct: 62   IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 125  --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT      I +    N+   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILTH--RSEIAQPLLGNNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED-------------YEAHD 229
            Y+ ++R +  D       +  A    + ++A N+  F+                 ++AH+
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232

Query: 230  VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              + +A+   ++   RPR  T   Y K++ +M  +F+DLP+A++NT  +A RC+  + + 
Sbjct: 233  ARVCIANGYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIKNTRLLASRCNITITLG 292

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRLD 342
              +LP F   + + I    E   +  +  GL  RL       Q         + Y +RLD
Sbjct: 293  INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L
Sbjct: 349  YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +RDV 
Sbjct: 409  LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQK 517
            R    P+   DR+ K+IP  P   +   A   + + +E      + D      + E+++K
Sbjct: 469  RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKELLTNPDAPDHELALEIWEMAKK 527

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDFLGL+
Sbjct: 528  LEGLTRNVGKHAGGVLIAPNRISDFSAIYCDG-EGHPVSQYDKDDVEAVGLVKFDFLGLR 586

Query: 578  TLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQA 631
             LT+LQ ++D + Q          DL  +P DD + Y  +L    T  +FQLESSGM++ 
Sbjct: 587  NLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDTDVYTSVLQEAKTSAVFQLESSGMKKY 646

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKE 684
            L  ++P  IEDIIA+ +LYRPGP+++ +   + +RK+G +++   HP      + P L+ 
Sbjct: 647  LAQLKPSNIEDIIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLES 706

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  I   
Sbjct: 707  TYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNIDGG 766

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++  
Sbjct: 767  LAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVVF 826

Query: 805  FCQDARQF-NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPF 862
               D R    + I+PPSVN     F V D   I Y L A+KGVG      I+ A  D  F
Sbjct: 827  LLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGAF 886

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSLD 906
              L DFC+RVD KK+ +R LE+L+ AG  D    +                R  L + L 
Sbjct: 887  KDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQLP 946

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                 A    +N+     ++F     +      LE         R   EQ  LG Y +GH
Sbjct: 947  EAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTGH 1005

Query: 967  PLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            PLD Y+  L     +K   +   T +G    +A ++          G RI  V   +   
Sbjct: 1006 PLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDVAFF----GERIV-VKLDDGKG 1059

Query: 1026 EYEANFF 1032
              E + +
Sbjct: 1060 RIEMSCY 1066


>gi|297618290|ref|YP_003703449.1| DNA polymerase III subunit alpha [Syntrophothermus lipocalidus DSM
            12680]
 gi|297146127|gb|ADI02884.1| DNA polymerase III, alpha subunit [Syntrophothermus lipocalidus DSM
            12680]
          Length = 1031

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/1028 (30%), Positives = 523/1028 (50%), Gaps = 53/1028 (5%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL VHS +S L+G  S+ +++D+ A    PA+A+TD +NL  A++F  +A  AGI+PI G
Sbjct: 2    HLHVHSCFSFLDGGSSIKSLVDRAAESGMPALALTDHDNLCGAVQFKLEAQKAGIKPIQG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             ++ +                     + LL    EGY+ L  ++++ +L D  ++  +  
Sbjct: 62   VEVTVA----------------GGYHLTLLAEDEEGYRNLCRILTKAHL-DNPRRQPQAG 104

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR-HR 190
            L  L+E   EG+I L+G   G I           A +  L + +++G D  Y+ LQ  + 
Sbjct: 105  LDILKE-HAEGIIALSGCRKGEIPARILSRQYDAAYRAALAYLEIWGKDGFYLELQDTYL 163

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-T 249
               R     + +LA    + +VATNN  +   ED++ HD+L  V   T V +    R   
Sbjct: 164  PGTRTLNRDLAELAEKLGVGVVATNNVHYACPEDFKVHDILTCVRTLTRVYEVHPERPLN 223

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +++LK   EM  +F + P+A+ NT EIA RC   L+  A + PRF         +  E+
Sbjct: 224  AENHLKPEREMKKLFREYPQAVANTWEIAERCRPSLEPGASLFPRFNPPPG----QTAES 279

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR  A  G            G   +   +RL+ E+++I  + ++ YFL+V D +++A++
Sbjct: 280  LLRELAYRGARK-------KYGRVTRRVEERLEHEIHIINTLGYADYFLVVWDIVEYARR 332

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A S  AY L IT++D L   LLFERF++ +R   PD DIDF    RD 
Sbjct: 333  QGIR-HTGRGSVADSFVAYCLGITEVDSLARGLLFERFMSLERAEKPDIDIDFDARWRDR 391

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            +  YV  KYG ++VA++ T+ + +A++A+R++G+AL +P +++DR+ K +P         
Sbjct: 392  ISEYVTRKYGEDKVAKVCTYSTYRARSAVRELGKALGLPEAELDRVAKRLPYGAYADRIR 451

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
              ++     RE+ L       LL++ +++ G  R   TH  G+V+   PL  + P+ +  
Sbjct: 452  DMLSLLPELRESGLDRDKFALLLDLCERVAGFPRFLGTHLGGLVVSREPLCDITPLQQ-S 510

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
                 VTQF+   +E+ GL+K D L L+ ++ ++ ++  + Q     D   IP DD  TY
Sbjct: 511  AKGEIVTQFDKDDVEELGLVKLDLLSLRAMSAVEDTVRAVKQEKKTFDYEKIPLDDDATY 570

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNG 667
             ++    T+G+FQLES   R     +    IEDI+A V+L RPGPI   +   Y +R+ G
Sbjct: 571  RMINKGQTIGVFQLESPAQRALQARLGASDIEDIVASVALIRPGPIKGNMVEPYISRRQG 630

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMD 726
            +E +  +HP ++P+L +T GVI++QEQV++IA  ++ ++  EAD LR+ M   + ++ MD
Sbjct: 631  REPVTFLHPALEPILAKTYGVILFQEQVIEIATAIARFTPGEADRLRKVMTHARSQKVMD 690

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +    FI  A +NG+S+  A  IF+ +A +A YGF ++HAAA+A  SY+TA++  HYP +
Sbjct: 691  EVGREFIKKAVENGVSQEAAATIFKAMAGYASYGFCEAHAAAFATTSYKTAYLLRHYPAQ 750

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F AA ++ +            +AR+  I+I+PP +N     F+V    I   LA +KG+ 
Sbjct: 751  FYAAVLSNQPMGYYPPHVILNEARRRGIKILPPCINRSGEAFRVEKGGIRIPLARVKGLS 810

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                + I+      PF SL +   +     L R  +++L+  GALD F  +R +LL    
Sbjct: 811  REGLKKILVYR---PFASLTEVWEKT---GLARDEMKNLIKCGALDVFDTNRRRLL---- 860

Query: 907  NIQKYAQWVEKNRTNK--HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
               K  +   + +      E I A + G  +D              ++  E  +LG    
Sbjct: 861  --VKARKLYFRPQPAGNVKEGIIAFDDGEAADAKM--DIPDFTEDEKYAMEFEILGLSPR 916

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             H +  ++  L++ G K   +  A   G+ +++A +++   +  T+ G    +++  +  
Sbjct: 917  EHLMARFRGYLKRNGFKSSRDLAALPDGSWVKVAGVLLCPHRPPTKSGRITVFMSLEDEF 976

Query: 1025 KEYEANFF 1032
               +   F
Sbjct: 977  GLTDVTVF 984


>gi|330984024|gb|EGH82127.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. lachrymans
            str. M301315]
          Length = 1201

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/1055 (38%), Positives = 586/1055 (55%), Gaps = 60/1055 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS YSL +  + +  ++ K     QPAIAI+DT+N+F+ ++    A A G++P
Sbjct: 2    SFVHLSVHSEYSLHDSLIRVKPLMSKAKEFNQPAIAISDTSNMFATIKAYNGAMAMGVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL--DQGKQ 127
            II  ++ I            KTP     +I L     +GYQ L EL+SR Y       + 
Sbjct: 62   IIAAEVQI------------KTPRLPASTITLYCMNNDGYQALCELISRGYNEAPRDDQN 109

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               I L WL +  T+ LI L+GG  G I R    N   +  + L  +K LFGDRL++ LQ
Sbjct: 110  HPVIPLEWL-DGQTDNLIALSGGREGEIGRLMMSNRKALVAEALSDYKLLFGDRLFIELQ 168

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            R     D     + V LA  H+LP+VATN S FL   D++ H+V +A+A    V      
Sbjct: 169  RIGHPADDRYVKEAVSLAIEHKLPVVATNPSRFLDPADFQTHEVRIAIAQGRSVRALRED 228

Query: 247  R---VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                 T   Y K+  EM  +FSD+P+A++NTV IA  CS  L +    LP F   +    
Sbjct: 229  LNPPCTQHQYFKSSEEMTELFSDIPQAIQNTVRIAALCSVDLTLGKSFLPSFPAPDKM-- 286

Query: 304  QKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
               E + L   +  GLE RLA   +           Y +RL FEL VI +M F GYFLIV
Sbjct: 287  --SEADYLEKTSYEGLEERLAYLFKDKDEIDAKRPTYVERLKFELGVINQMGFPGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFI+WAK N+IPVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPDFD+
Sbjct: 345  ADFIKWAKANDIPVGPGRGSGAGSLVAYSLGITDLDPLPYDLLFERFLNPERVSMPDFDV 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFC D+RD+VIRYV + YGH+ V+QIIT+G++ AK  +RDV RAL  PY   +++ +LIP
Sbjct: 405  DFCMDKRDQVIRYVADAYGHDAVSQIITYGTMAAKMVVRDVARALGYPYRLGNQISQLIP 464

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
             +P   +    +      +     D  V  ++  + KLEG+ R    HA G++I    L+
Sbjct: 465  KEPDITLEKA-LDRVPTLKVMLDTDHDVKNIMLHALKLEGITRQVGKHAGGVLISPGALT 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK----- 595
            Q  P Y D      V+Q++   +EKAGL+KFDFLGL+ LT++  +L  +  R  K     
Sbjct: 524  QFTPTYCDPDGGSLVSQYDKDDVEKAGLVKFDFLGLRNLTIIDHALKSINGRREKEGLAK 583

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +D++ I   D  TY ++    T  +FQLESSGM+  ++ +QPDC ED+IALV+L+RPGP+
Sbjct: 584  IDINGIDLTDKLTYEMIQRCETTAVFQLESSGMKNLIKRIQPDCFEDLIALVALFRPGPL 643

Query: 656  DNIV--VYNNRKNGKEKIVSIHP-----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             + +   + +RK+G+ ++   HP      + P+L+ T G+I+YQEQVMQIAQ+++GY+L 
Sbjct: 644  QSGMVDDFIDRKHGRAELSYPHPNYQYAGLKPVLEPTYGIILYQEQVMQIAQVMAGYTLG 703

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM KQ+  F+ G  KNGI   +A NIF+L+ KFA YGFNKSH+AA
Sbjct: 704  GADMLRRAMGKKKPEEMAKQRGGFVEGCGKNGIDAHLAGNIFDLVEKFAGYGFNKSHSAA 763

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA++++QTAW+K HYP +F+AA ++ +MDN +K+ +F  + R   ++I  P  N     F
Sbjct: 764  YALVAFQTAWLKAHYPADFMAAVLSSDMDNTDKVVRFIHECRNMGVEIQTPHANHSQWHF 823

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
               +  I Y L AIKG G + ++ ++        +  + DF  R     LN+  +E+ + 
Sbjct: 824  TSHNGVILYGLGAIKGFGESASKAMLADRKAGGSYQDIIDFLRR---NSLNKSSIEACIH 880

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AG  D  G  R +LL          + + KN       +F  +       +   + +V +
Sbjct: 881  AGMFDFSGLQRSELLAIYPTAASAGKQLRKNV--NQGMLFDMD----LPVVKRTETTVMD 934

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----------NNIRL 997
              VR   E++ LG Y +GHP   Y+  L+        E   ++             ++ +
Sbjct: 935  DDVRLAGERKHLGLYLTGHPYAKYQTRLKHSLTASLIEIAQSVEDDVDGVEKAKFKHVTV 994

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            A ++     +   KG+   +    +     + + F
Sbjct: 995  AGLLSDIDARSNTKGT-YAFFKLDDGTARLDCSIF 1028


>gi|88658193|ref|YP_507712.1| DNA polymerase III, alpha subunit [Ehrlichia chaffeensis str.
            Arkansas]
 gi|88599650|gb|ABD45119.1| DNA polymerase III, alpha subunit [Ehrlichia chaffeensis str.
            Arkansas]
          Length = 1120

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 457/1026 (44%), Positives = 658/1026 (64%), Gaps = 38/1026 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ HS YSLL G + ++++++       PA+A+TD+ NLF +LEFS  A + G+QPI
Sbjct: 5    FVHLRSHSDYSLLHGMIKIDSLVNLCVQYNMPALALTDSGNLFGSLEFSDYASSLGVQPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC + +                 ++  +VLLV    GY  ++ LVS  +   Q  +  R
Sbjct: 65   IGCNIMMSYNG------------DSIGELVLLVKDQIGYNNIVNLVSNSFKDSQSNKVNR 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L  L ++  +G+I+LTGG  G + +    N        +      F   LYV LQRH 
Sbjct: 113  VDLEKLIDL-KDGIIVLTGGHDGFLSQLLLGNVIDYG--IIDKLLLAFNGNLYVELQRHG 169

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              +    E  +V  AY  +LPLVATN+ LF  + D+ AHDVL  ++    ++Q+ R   T
Sbjct: 170  MEEEKIIEKTLVNFAYEKDLPLVATNDVLFAKKNDFLAHDVLSCISDGNYIAQEGRKMFT 229

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +HY K+  EM  +F D+PEA+ NTV IA+RCSF+ +   P+LP F         K E  
Sbjct: 230  EEHYFKSSDEMYRLFKDIPEAVSNTVLIAQRCSFMPETRKPMLPHFPCSSG----KNESQ 285

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL ++A+ GL+ RL   +++    ++ Y +RL +EL++I  M ++GYFLIV+DFI W+K+
Sbjct: 286  ELISQAINGLDNRLKSKSLSTEQVSK-YYERLHYELDIIISMDYAGYFLIVSDFICWSKR 344

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ++RD 
Sbjct: 345  NDIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDRISMPDFDIDFCQEKRDY 404

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS- 488
            VI YV+ KYG   VA IITFG LQAKA LRDVGR +QMPY QVDR+CK+IP++P  PV+ 
Sbjct: 405  VIEYVRKKYG--YVAHIITFGKLQAKAVLRDVGRVMQMPYFQVDRICKMIPHNPVKPVTL 462

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +AI  D   ++ +  D +V +LLEIS KLEGLYRH S HAAGIVI DR L +L+P+Y D
Sbjct: 463  SEAIEMDKNLQKEQDDDETVAKLLEISLKLEGLYRHVSIHAAGIVICDRELEELLPLYYD 522

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
              S LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ +    + + G  VD+S IP +D +T
Sbjct: 523  STSSLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICHLVNRGGHSVDISRIPLNDRKT 582

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            Y +L+   ++G+FQLESSGMR+ +  ++PD I DIIAL+SLYRPGP+DNI +Y  RK+G 
Sbjct: 583  YEMLSAGDSVGVFQLESSGMREVISKLKPDNINDIIALISLYRPGPMDNISIYIARKHGF 642

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EK   IHP+++ +L+ET GVIIYQEQVM+IA++++GYSL EAD+LRRAMGKKIKEEMD Q
Sbjct: 643  EKPDYIHPILEDVLRETFGVIIYQEQVMEIAKIMAGYSLGEADLLRRAMGKKIKEEMDNQ 702

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  FI+GA  NGI +  A  IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +Y +EF 
Sbjct: 703  RRTFINGAVSNGIEEEKASYIFDLVAKFAGYGFNKSHAAAYALISYQTAYLKANYTLEFF 762

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGT 847
             ASM L++ + +K++  C  A+   I+I+PP +N+  V F +   + I Y+L A+K VG 
Sbjct: 763  TASMNLDIMDKDKLEMLCHQAKLHGIEILPPDINSSKVLFTIEGASSIRYALGALKNVGQ 822

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             +A+ I++  A   +  + DF  RV +K +++R+LES++ AG LD    +R QL +S+  
Sbjct: 823  HSAKEIVDDVA---YKDIWDFIDRVSTKCVHKRILESIIKAGVLDSIHSNRKQLFESVFL 879

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
                 ++ + N      ++F        +   L +        +  NE   +GFY + HP
Sbjct: 880  FLDIIEYNKYNANFNQFSLFND-----KNHYKLSETDDWTKEEKLNNEFSSIGFYLNHHP 934

Query: 968  LDVYKPILRKMGIKGYE-ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            ++ YK +L K+ I     +  ++       +  ++ + + + T K  +   VT S+P   
Sbjct: 935  MENYKYLLDKLNIGFIHYDDKSSYNN---VIVGIISNVKVRSTNK-DKFAVVTLSDPFNI 990

Query: 1027 YEANFF 1032
            +E  F+
Sbjct: 991  HEIVFY 996


>gi|57238919|ref|YP_180055.1| DNA polymerase III alpha subunit [Ehrlichia ruminantium str.
            Welgevonden]
 gi|57160998|emb|CAH57904.1| DNA polymerase III, alpha subunit [Ehrlichia ruminantium str.
            Welgevonden]
          Length = 1119

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 463/1027 (45%), Positives = 665/1027 (64%), Gaps = 41/1027 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ HS YSLL G + ++ +++       PA+A+TD+ NLF +LEFS  A   G+QPI
Sbjct: 5    FVHLRSHSDYSLLRGMIKIDTLVNLCVQYNMPAVALTDSGNLFGSLEFSDHASNVGVQPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC + +    N             +  +VLL     GY  +I+LVS  +  +Q  +  R
Sbjct: 65   IGCNIMVHYHGN------------NIGELVLLAKDQAGYNNIIDLVSNSFKGNQSGKLNR 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN--SSQVAEKRLLTFKKLFGDRLYVNLQR 188
            I L+ L ++  +G+I+LTGG  G + +    +     V  K LL     F + LYV LQR
Sbjct: 113  IDLNRLIQL-KDGIIILTGGYEGLLAQLLLRDVIHYNVVNKLLL----AFENNLYVELQR 167

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +    E+ +++ AY   LPLVATN+ LF+ +ED+ A+DVL  ++    V+Q+DR  
Sbjct: 168  HGIKEESIVETTLIKFAYEKNLPLVATNDVLFVKKEDFPAYDVLSCISDGHYVAQEDRKM 227

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T +HY K+  EM S+F D+PEA+ NT+ IA+RCSF+ ++  PILP F         K E
Sbjct: 228  FTAEHYFKSSQEMCSLFHDIPEAIYNTLLIAQRCSFMPEIRKPILPHFPCSSG----KNE 283

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              EL  +A+AGLE RL    +++    + Y +RL +EL+VI  M ++GYFLIV+DFI W+
Sbjct: 284  SQELITQALAGLEKRLKLKNLSEEDMVK-YHERLLYELDVIISMDYAGYFLIVSDFICWS 342

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+N I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ++R
Sbjct: 343  KRNGIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDRISMPDFDIDFCQEKR 402

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI YV+ KYG   VA IITFG LQA+A LRDVGR +Q+PY QVDR+CK+IP++P  PV
Sbjct: 403  DLVIEYVRKKYG--YVAHIITFGKLQARAVLRDVGRVMQIPYFQVDRICKMIPHNPVRPV 460

Query: 488  S-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +AI  D   ++ R  D +V +LLEIS KLEGLYRH S HAAGIVI DR L +LVP+Y
Sbjct: 461  TLSEAIGMDKNLQKERDDDETVAKLLEISLKLEGLYRHVSIHAAGIVICDRKLEELVPLY 520

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  + LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ +    + +RG  +D+  IP DD 
Sbjct: 521  YDSTAFLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICQLVRERGYVIDIVSIPLDDR 580

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY +L++  ++G+FQLESSGMR+ +  ++PD I DIIAL+SLYRPGP+DNI VY  RK+
Sbjct: 581  KTYEMLSSGDSIGVFQLESSGMREVISKLKPDNINDIIALISLYRPGPMDNIPVYIARKH 640

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G EK   IH +++ +LKET GVIIYQEQVM+IA++++GYSL EAD+LRRAMGKKIKEEMD
Sbjct: 641  GLEKPDYIHSILEGVLKETFGVIIYQEQVMEIAKIMAGYSLGEADLLRRAMGKKIKEEMD 700

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             Q+  FI+GA  NGI++  A  IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +Y +E
Sbjct: 701  NQRRTFINGAVNNGINQEKASYIFDLVAKFAGYGFNKSHAAAYALISYQTAYLKANYTIE 760

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  ASM L++ + +K++ FC  A+   I I+PP +N   V F +  + I Y+L A+K VG
Sbjct: 761  FFTASMNLDITDKDKLEMFCNQAKLHGINILPPDINYSKVFFVIEGSSIRYALGALKNVG 820

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  ++   +D  ++ + DF  R+ +K +++R+LE+++ AG LD    +R QL +S+ 
Sbjct: 821  QHAAHELI---SDVKYNDIWDFVDRISTKSVHKRMLENIIKAGVLDSIHSNRKQLFESVI 877

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                  ++ + N +    ++F        +   L +        +  NE   +GFY + H
Sbjct: 878  LFLDIIEYNKYNSSFNQISLFND-----KNHYKLVETDDWTKEEKLYNEFSSIGFYLNNH 932

Query: 967  PLDVYKPILRKMGIKGYE-ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            P+  Y+ +L K+ I     ++ +        +A ++ + + + +    +   VT S+P  
Sbjct: 933  PMQSYQDLLDKLNIGFINYDNKSAYNNK---VAGVISNIRVR-SANRDKFALVTLSDPNN 988

Query: 1026 EYEANFF 1032
             +E  F+
Sbjct: 989  IHEIAFY 995


>gi|58578851|ref|YP_197063.1| DNA polymerase III alpha subunit [Ehrlichia ruminantium str.
            Welgevonden]
 gi|58417477|emb|CAI26681.1| DNA polymerase III alpha subunit [Ehrlichia ruminantium str.
            Welgevonden]
          Length = 1122

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 463/1027 (45%), Positives = 665/1027 (64%), Gaps = 41/1027 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ HS YSLL G + ++ +++       PA+A+TD+ NLF +LEFS  A   G+QPI
Sbjct: 8    FVHLRSHSDYSLLRGMIKIDTLVNLCVQYNMPAVALTDSGNLFGSLEFSDHASNVGVQPI 67

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC + +    N             +  +VLL     GY  +I+LVS  +  +Q  +  R
Sbjct: 68   IGCNIMVHYHGN------------NIGELVLLAKDQAGYNNIIDLVSNSFKGNQSGKLNR 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN--SSQVAEKRLLTFKKLFGDRLYVNLQR 188
            I L+ L ++  +G+I+LTGG  G + +    +     V  K LL     F + LYV LQR
Sbjct: 116  IDLNRLIQL-KDGIIILTGGYEGLLAQLLLRDVIHYNVVNKLLL----AFENNLYVELQR 170

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +    E+ +++ AY   LPLVATN+ LF+ +ED+ A+DVL  ++    V+Q+DR  
Sbjct: 171  HGIKEESIVETTLIKFAYEKNLPLVATNDVLFVKKEDFPAYDVLSCISDGHYVAQEDRKM 230

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T +HY K+  EM S+F D+PEA+ NT+ IA+RCSF+ ++  PILP F         K E
Sbjct: 231  FTAEHYFKSSQEMCSLFHDIPEAIYNTLLIAQRCSFMPEIRKPILPHFPCSSG----KNE 286

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              EL  +A+AGLE RL    +++    + Y +RL +EL+VI  M ++GYFLIV+DFI W+
Sbjct: 287  SQELITQALAGLEKRLKLKNLSEEDMVK-YHERLLYELDVIISMDYAGYFLIVSDFICWS 345

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+N I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ++R
Sbjct: 346  KRNGIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDRISMPDFDIDFCQEKR 405

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D VI YV+ KYG   VA IITFG LQA+A LRDVGR +Q+PY QVDR+CK+IP++P  PV
Sbjct: 406  DLVIEYVRKKYG--YVAHIITFGKLQARAVLRDVGRVMQIPYFQVDRICKMIPHNPVRPV 463

Query: 488  S-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +  +AI  D   ++ R  D +V +LLEIS KLEGLYRH S HAAGIVI DR L +LVP+Y
Sbjct: 464  TLSEAIGMDKNLQKERDDDETVAKLLEISLKLEGLYRHVSIHAAGIVICDRKLEELVPLY 523

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D  + LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ +    + +RG  +D+  IP DD 
Sbjct: 524  YDSTAFLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICQLVRERGYVIDIVSIPLDDR 583

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY +L++  ++G+FQLESSGMR+ +  ++PD I DIIAL+SLYRPGP+DNI VY  RK+
Sbjct: 584  KTYEMLSSGDSIGVFQLESSGMREVISKLKPDNINDIIALISLYRPGPMDNIPVYIARKH 643

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G EK   IH +++ +LKET GVIIYQEQVM+IA++++GYSL EAD+LRRAMGKKIKEEMD
Sbjct: 644  GLEKPDYIHSILEGVLKETFGVIIYQEQVMEIAKIMAGYSLGEADLLRRAMGKKIKEEMD 703

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
             Q+  FI+GA  NGI++  A  IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +Y +E
Sbjct: 704  NQRRTFINGAVNNGINQEKASYIFDLVAKFAGYGFNKSHAAAYALISYQTAYLKANYTIE 763

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  ASM L++ + +K++ FC  A+   I I+PP +N   V F +  + I Y+L A+K VG
Sbjct: 764  FFTASMNLDITDKDKLEMFCNQAKLHGINILPPDINYSKVFFVIEGSSIRYALGALKNVG 823

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  ++   +D  ++ + DF  R+ +K +++R+LE+++ AG LD    +R QL +S+ 
Sbjct: 824  QHAAHELI---SDVKYNDIWDFVDRISTKSVHKRMLENIIKAGVLDSIHSNRKQLFESVI 880

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                  ++ + N +    ++F        +   L +        +  NE   +GFY + H
Sbjct: 881  LFLDIIEYNKYNSSFNQISLFND-----KNHYKLVETDDWTKEEKLYNEFSSIGFYLNNH 935

Query: 967  PLDVYKPILRKMGIKGYE-ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            P+  Y+ +L K+ I     ++ +        +A ++ + + + +    +   VT S+P  
Sbjct: 936  PMQSYQDLLDKLNIGFINYDNKSAYNNK---VAGVISNIRVR-SANRDKFALVTLSDPNN 991

Query: 1026 EYEANFF 1032
             +E  F+
Sbjct: 992  IHEIAFY 998


>gi|289675281|ref|ZP_06496171.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. syringae
            FF5]
          Length = 1081

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/961 (39%), Positives = 544/961 (56%), Gaps = 45/961 (4%)

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
            Y+ L EL+SR ++  Q    + I   W+ +  +EG+I L+    G I  A    +   A+
Sbjct: 1    YRNLTELISRGFIEGQRNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEAD 59

Query: 169  KRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            + L  + ++F DR Y+ +QR +R  D       V LA  H  PLVATN+  F+ + D+EA
Sbjct: 60   ELLREWLEVFPDRFYIEVQRTNRANDEEHLHAAVALAERHGAPLVATNDVRFIKQADFEA 119

Query: 228  HDVLMAVAHSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            H+  + +     +    R    +   YLK+  EM  +FSDLPEALENTVEIA+RC+  ++
Sbjct: 120  HETRVCIGEGRALDDPRRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVK 179

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRL 341
            +    LP F   +   I    +   R  +  GLE R                 Q Y  RL
Sbjct: 180  LGTHFLPNFPIPDGMTI----DEYFRKVSFDGLEERLAVLLPKDTTEDYEAKRQVYVDRL 235

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            +FEL++I +M F GYFLIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + 
Sbjct: 236  NFELDIIIQMGFPGYFLIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYD 295

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFLNP+R+SMPDFD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV
Sbjct: 296  LLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDV 355

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
             R     Y   DRL K+IP +    +  +A   +   R+    D     + E++ KLEG+
Sbjct: 356  ARVQGKSYGLADRLSKMIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGI 414

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             R+   HA G+VI    L+   P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT+
Sbjct: 415  VRNVGKHAGGVVIAPTKLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTI 474

Query: 582  LQKSLDFLAQ-----RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            +  +L  + +         +D++ IP DD  TY LL    T  +FQLES GM++ ++ ++
Sbjct: 475  IDWALKTINRDRAKVNEEPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLK 534

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVI 689
            PDC+ED+IALV+L+RPGP+ + +V +               +   +  + P+L  T G+I
Sbjct: 535  PDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGII 594

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQIAQ+++GY+L  AD+LRRAMGKK  EEM KQ+  FI G   N I   +A NI
Sbjct: 595  LYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPEEMAKQRGGFIDGCKTNNIDPDLAGNI 654

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            F+L+ KFA YGFNKSH+AAY ++SYQTAW+KTHYP  F+AA ++ +M N +K+    ++ 
Sbjct: 655  FDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHYPAPFMAAVLSADMHNTDKVVTLIEEV 714

Query: 810  RQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
            R   +++  P VNT    F V  D RI Y L AIKGVG      I +A  D PF  L DF
Sbjct: 715  RTMKLRLDAPDVNTSEFKFTVSDDGRILYGLGAIKGVGEGPVEAITDARQDGPFKDLFDF 774

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGY---------------SRMQLLQSLDNIQKYAQ 913
            C+RVD K++N+R L+ L+ +GALD  G                +R  LL +L+   + A+
Sbjct: 775  CARVDLKRVNKRTLDGLIRSGALDRLGPYFELEPKAYQANIDRNRSVLLAALEEAIQAAE 834

Query: 914  WVEKNRTNKHENIFAHE--KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
               ++  + H ++F     +          K    +   R   E+  LG Y +GHP+D Y
Sbjct: 835  QTARSHDSGHADLFGGLFVEADADVYANHRKTRELSLKDRLRGEKETLGLYLTGHPIDEY 894

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +  +R+   +   +           +A ++++ +  K +KG ++G++T  + +   EA+ 
Sbjct: 895  EGEIRRFARQRIIDLKPARDTQ--TVAGLIIALRVMKNKKGDKMGFITLDDRSARIEASL 952

Query: 1032 F 1032
            F
Sbjct: 953  F 953


>gi|326570853|gb|EGE20877.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis BC7]
          Length = 1240

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1087 (35%), Positives = 582/1087 (53%), Gaps = 86/1087 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    AGI+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124
            IIG ++ +         +  K       S++L   +  GYQ L+ L+S  Y         
Sbjct: 62   IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 125  --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT      I +    N+   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILTH--RSEIAQPLLGNNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED-------------YEAHD 229
            Y+ ++R +  D       +  A    + ++A N+  F+                 ++AH+
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232

Query: 230  VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              + +A+   ++   RPR  T   Y K++ +M  +F+DLP+A+ENT  +A RC+  + + 
Sbjct: 233  ARVCIANGYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIENTRLLASRCNITITLG 292

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRLD 342
              +LP F   + + I    E   +  +  GL  RL       Q         + Y +RLD
Sbjct: 293  INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L
Sbjct: 349  YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +RDV 
Sbjct: 409  LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQK 517
            R    P+   DR+ K+IP  P   +   A   + + +E      + D      + E+++K
Sbjct: 469  RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKELLTNPDAPDHELALEIWEMAKK 527

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDFLGL+
Sbjct: 528  LEGLTRNVGKHAGGVLIAPNRISDFSAIYCDG-EGHPVSQYDKDDVEAVGLVKFDFLGLR 586

Query: 578  TLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQA 631
             LT+LQ ++D + Q          DL  +P DD + Y  +L    T  +FQLESSGM++ 
Sbjct: 587  NLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKKY 646

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKE 684
            L  ++P  IED+IA+ +LYRPGP+++ +   + +RK+G +++   HP      + P L+ 
Sbjct: 647  LAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLES 706

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  I   
Sbjct: 707  TYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNIDGG 766

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++  
Sbjct: 767  LAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVVF 826

Query: 805  FCQDARQF-NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPF 862
               D R    + I+PPSVN     F V D   I Y L A+KGVG      I+ A  D  F
Sbjct: 827  LLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGAF 886

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSLD 906
              L DFC+RVD KK+ +R LE+L+ AG  D    +                R  L + L 
Sbjct: 887  KDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQLP 946

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                 A    +N+     ++F     +      LE         R   EQ  LG Y +GH
Sbjct: 947  EAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTGH 1005

Query: 967  PLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            PLD Y+  L     +K   +   T +G    +A ++          G RI  V   +   
Sbjct: 1006 PLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDVAFF----GERIV-VKLDDGKG 1059

Query: 1026 EYEANFF 1032
              E + +
Sbjct: 1060 RIEMSCY 1066


>gi|326570115|gb|EGE20160.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis BC8]
          Length = 1240

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/1087 (35%), Positives = 582/1087 (53%), Gaps = 86/1087 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    AGI+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124
            IIG ++ +         +  K       S++L   +  GYQ L+ L+S  Y         
Sbjct: 62   IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 125  --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT      I +    N+   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILTH--RSEIAQPLLGNNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED-------------YEAHD 229
            Y+ ++R +  D       +  A    + ++A N+  F+                 ++AH+
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232

Query: 230  VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              + +A+   ++   RPR  T   Y K++ +M  +F+DLP+A++NT  +A RC+  + + 
Sbjct: 233  ARVCIANGYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIKNTRLLASRCNITITLG 292

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRLD 342
              +LP F   + + I    E   +  +  GL  RL       Q         + Y +RLD
Sbjct: 293  INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L
Sbjct: 349  YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +RDV 
Sbjct: 409  LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQK 517
            R    P+   DR+ K+IP  P   +   A   + + +E      + D      + E+++K
Sbjct: 469  RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKELLTNPDAPDHELALEIWEMAKK 527

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDFLGL+
Sbjct: 528  LEGLTRNVGKHAGGVLIAPNSISDFSAIYCDG-EGHPVSQYDKDDVEAVGLVKFDFLGLR 586

Query: 578  TLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQA 631
             LT+LQ ++D + Q          DL  +P DD + Y  +L    T  +FQLESSGM++ 
Sbjct: 587  NLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKKY 646

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKE 684
            L  ++P  IED+IA+ +LYRPGP+++ +   + +RK+G +++   HP      + P L+ 
Sbjct: 647  LAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLES 706

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  I   
Sbjct: 707  TYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNIDGG 766

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++  
Sbjct: 767  LAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVVF 826

Query: 805  FCQDARQF-NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPF 862
               D R    + I+PPSVN     F V D   I Y L A+KGVG      I+ A  D  F
Sbjct: 827  LLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGAF 886

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSLD 906
              L DFC+RVD KK+ +R LE+L+ AG  D    +                R  L + L 
Sbjct: 887  KDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQLP 946

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                 A    +N+     ++F     +      LE         R   EQ  LG Y +GH
Sbjct: 947  EAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTGH 1005

Query: 967  PLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            PLD Y+  L     +K   +   T +G    +A ++          G RI  V   +   
Sbjct: 1006 PLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDVAFF----GERIV-VKLDDGKG 1059

Query: 1026 EYEANFF 1032
              E + +
Sbjct: 1060 RIEMSCY 1066


>gi|27904720|ref|NP_777846.1| DNA polymerase III alpha subunit [Buchnera aphidicola str. Bp
            (Baizongia pistaciae)]
 gi|46395824|sp|Q89AN8|DPO3A_BUCBP RecName: Full=DNA polymerase III subunit alpha
 gi|27904117|gb|AAO26951.1| DNA polymerase III alpha subunit [Buchnera aphidicola str. Bp
            (Baizongia pistaciae)]
          Length = 1077

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/1046 (36%), Positives = 588/1046 (56%), Gaps = 38/1046 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+VHS +S+++G +  N +         PAIAITD++NL   ++F +   + GI+PI
Sbjct: 6    FVHLRVHSDFSMIDGLVKPNILAQHAKKLNMPAIAITDSSNLHGMIKFYRATFSQGIKPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-SV 129
            IG    +   D    +N           I LL     GY+ L+ L+SR Y +    +  V
Sbjct: 66   IGVDFKVFPDDKYVSSNM-------FTKITLLAVNNSGYRNLLLLLSRAYKIGYNNKVGV 118

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             I   WL E   +G+I+L+GG  G I      N+  +    L  + + F +  Y+ + R 
Sbjct: 119  FITKEWLVE-HRKGIILLSGGCYGDIGVNLLNNNKSLVLNCLSFYNRFFENFYYLEIMRI 177

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPR 247
             R  +    S++  ++    +P+VATN   FL+++D+E H + + +     +        
Sbjct: 178  GRSNEEQYISRIKDISAREGIPVVATNEVCFLNKQDFEVHKIRVFINLGCTIKSNSAHYN 237

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             TP  +++  +EM  +F D P+A+ NT+EI++RC+ IL+       ++   +        
Sbjct: 238  YTPQQFMRTSNEMEELFLDFPDAISNTIEISKRCNVILKF-----NKYFLPKFQTGNMNT 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             + L  KA  G++ RL Q    K         Y  RL  ELNVI +M F GYFLIV +FI
Sbjct: 293  TDFLVMKAKKGMQKRLIQLFPNKQDRINNVNRYYTRLLSELNVINKMGFPGYFLIVMEFI 352

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAKKN+IPVGPGRGSGAGS+ +Y L IT++DPL F LLFERFLNP+R+ MPD D+DFC 
Sbjct: 353  NWAKKNDIPVGPGRGSGAGSLVSYVLNITELDPLSFDLLFERFLNPERVFMPDLDVDFCM 412

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D+RD+VI +V   YG E V+QII+FG+L AK+ +RDVGR    PY  ++RL KLIP D  
Sbjct: 413  DKRDKVIEHVSKIYGEESVSQIISFGTLTAKSVIRDVGRVFGFPYGFLNRLSKLIPLDLG 472

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  +AI+      E    D  V  L+ I+++LEG+ R+ S HA G+VI  + ++  VP
Sbjct: 473  MTLE-KAISQKVELLELYKFDKDVRELINIAKRLEGITRNVSKHAGGVVISPKKITDFVP 531

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-----LS 599
            +Y D   + PVTQF+   I   GL+KFDFLGLKTLT++  ++  +  +          ++
Sbjct: 532  LYYDENGNNPVTQFDKNDIGYTGLVKFDFLGLKTLTVIHGTVKMINTKFSNNQKKLININ 591

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I   D   +  L T  T+ +FQLES+GM+  +  ++PD  ED++ALV+L+RPGP+ + +
Sbjct: 592  TISLKDKNCFKFLQTAQTIAVFQLESNGMKDLIRRLKPDSFEDLVALVALFRPGPLQSGM 651

Query: 660  V--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            V  + NRK+GKEKI+       H L+ P+LK T G+I+YQEQVM+I Q+ + Y+L  AD+
Sbjct: 652  VDNFINRKHGKEKILYPNKECQHALLKPILKSTYGIILYQEQVMKIVQVFANYTLGHADL 711

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRR M KK + EM+K +E F +GA +N I+  ++  IF LL +FA Y FNKSH+ +YA++
Sbjct: 712  LRRTMEKKDQVEMNKHREMFKNGAKENNINTKLSTKIFNLLEQFAGYAFNKSHSVSYALV 771

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SYQT W+K +YP EF+A++M  ++DN++KI     + +   ++I+PP+VN     FKV D
Sbjct: 772  SYQTLWLKLYYPEEFMASAMNADIDNIKKIVVLINECKVMKLKIIPPNVNQSDYYFKVDD 831

Query: 833  NR-IYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            ++ I Y L AIKG+G +    I+ A  ++  F  L D C  V+SK++  +V+E L+ +G 
Sbjct: 832  DKNIIYGLGAIKGIGKSVILDIVNARKNRKRFSELFDLCVSVNSKRITHKVIEKLIMSGG 891

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS--DKITLEKFSVENS 948
             DCFG +R  L+ S + I K A    K+   K  ++F      F+   K       + + 
Sbjct: 892  CDCFGLNRSILMHSCEYIIKSANQYLKSIILKKRDLFGLLLDDFNVIKKKYYSIKKLYSM 951

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQ 1006
                + E+  LG Y +GHP+D +    +R   +   ++          I +  M+   + 
Sbjct: 952  KQILDWEKDSLGLYLTGHPVDEHVHLQMRYNNVIRLKDLFNNKITTEQISILGMISFLKF 1011

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
            K T+    + ++   +   + E   F
Sbjct: 1012 KVTKTKKNMVFMILEDSFVQIEVIIF 1037


>gi|313633079|gb|EFR99983.1| DNA polymerase III subunit alpha [Listeria seeligeri FSL N1-067]
          Length = 1108

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1028 (35%), Positives = 577/1028 (56%), Gaps = 41/1028 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S+++++ K      PA+AITD N L+ A+EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASVDSLVAKAKEYHYPALAITDKNVLYGAVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + I          QG         ++L+  T  GY  L+++ S +   ++G++  +
Sbjct: 63   IGMTVTI----------QGYLNPINSYELILIAETTAGYHELLKIASAIQTREEGQELPQ 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
               SWL+   ++ LI ++ G+ G ++R     +   A +       +FG D +Y++LQ+ 
Sbjct: 113  ---SWLRAY-SKDLIAISPGAKGEVERLLMEENRDGALEAYQNLVAIFGGDSVYLSLQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                     ++       ++  VAT N  ++  +D +A +VL A+  +  V  +  P   
Sbjct: 169  NP---RLFGKIETFCTEEKVRAVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWETLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P+++           +D   +  E T E+A RC   + +   +LPRF      +  +   
Sbjct: 226  PNYFTSQEEIEREWQTDFEKQVCEETGELAARCKVEIALDQHLLPRFPL----NADQSAS 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR  A AGLE R        G  A DY++RLD+EL VI  M F+ YFLIV D I++++
Sbjct: 282  EVLRQTAYAGLEER--------GLMAPDYQERLDYELKVITEMGFADYFLIVWDVIRYSR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RRD
Sbjct: 334  EAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     + 
Sbjct: 394  EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +AI +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V +   
Sbjct: 453  QKAIQESPRLENHIKSSKINEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHE 607
               D  +TQF M  +EK GL+K DFLGL+ L+LL + L      R   + L+ I  +D +
Sbjct: 513  S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNREKPLTLAAISLEDEK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  T  T G+FQ ES G+R+ L  ++P   EDI+A+ +LYRPGP++ I  +  RK+G
Sbjct: 572  TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDIVAVDALYRPGPMEQIDTFIARKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KE I   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++
Sbjct: 632  KEAIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ GA   G S++ A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K +YP  F
Sbjct: 692  ERIHFVEGARSKGYSESSANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKANYPAAF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVG 846
            +++ ++    N +KI ++  +A+ + I+++ PS+N     F++  +N I YS   I+ V 
Sbjct: 752  MSSLLSSVFGNDDKISQYITEAKNYGIRMLAPSINHSNYYFQIEGENAIRYSFRVIRKVP 811

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
            T     I+      PF    DFC R+  K L   +LE+LV +G  D FG  R  +L ++D
Sbjct: 812  TKFILEIINERKKAPFQDFFDFCERMPHKMLTETILEALVLSGCFDEFGEDRATVLATID 871

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965
             + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y S 
Sbjct: 872  AVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKAAPISIDEKLEKEKLYTGQYVSA 929

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+  Y+  L+ + I    +      G N R+A  V   +  +T+KG  + ++T S+  K
Sbjct: 930  HPVSYYQTKLQNLAITRLADI---HSGKNYRVAVYVHEVKSIRTKKGETMCFLTISDDTK 986

Query: 1026 EYEANFFP 1033
            E  A  FP
Sbjct: 987  ELSAVMFP 994


>gi|16800677|ref|NP_470945.1| hypothetical protein lin1609 [Listeria innocua Clip11262]
 gi|16414096|emb|CAC96840.1| dnaE [Listeria innocua Clip11262]
          Length = 1108

 Score =  648 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/1028 (34%), Positives = 575/1028 (55%), Gaps = 41/1028 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + I          QG         ++L+  +  GY  L+++ S +   ++G     
Sbjct: 63   IGMTVTI----------QGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---PE 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   +  LI ++ G+ G ++R     +   A +       +FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSS-NLIAISPGAKGEVERLLMEENRDGALEVYENLVSIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                    +++   +   + P+VAT +  ++  +D +A +VL A+  +  V     P   
Sbjct: 169  NP---RLFAKIEAFSAEEKAPVVATKDVQYMEPKDAQAKEVLTAIRDNRTVDWATLPLAG 225

Query: 250  PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P+++                +A   T ++A RC   + +   +LPRF      + ++   
Sbjct: 226  PNYFTSQAEMERDWQTGFEKQACLETEKLAERCHVEIALDQHLLPRFPL----NEEQNAP 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR  A AGL+ R           A++Y++RLD+EL VI  M F+ YFLIV D I++++
Sbjct: 282  DVLRETAYAGLKER--------NLLAKEYQERLDYELKVITEMGFADYFLIVWDVIRYSR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RRD
Sbjct: 334  EAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     + 
Sbjct: 394  EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V +   
Sbjct: 453  QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHE 607
               D  +TQF M  +EK GL+K DFLGL+ L+LL + L      R   + L+ I  +D +
Sbjct: 513  S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNRETPLTLADISLEDKK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK+G
Sbjct: 572  TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++
Sbjct: 632  KEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ GA   G S++ A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K HYP  F
Sbjct: 692  ERIHFVEGARSKGYSESSANQVYDMIIQFANYGFNRSHAAAYSKIAFQLAYLKAHYPAAF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVG 846
            +++ ++    N +KI ++  +A+ + I ++ PS+N     F++ +   I YS   I+ V 
Sbjct: 752  MSSLLSSVFGNDDKISQYITEAKNYGINMLAPSINHSNYYFQMENETSIRYSFRVIRKVP 811

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
            T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D
Sbjct: 812  TKFILEIINERKKAPFKDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965
             + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y S 
Sbjct: 872  AVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+  Y+  L+ + I       +   G   ++AA V   +  +T+KG  + ++T S+ +K
Sbjct: 930  HPVSYYQNKLQNLAITR---LASVSSGKIYQVAAYVHEVKSIRTKKGETMCFLTISDESK 986

Query: 1026 EYEANFFP 1033
            E  A  FP
Sbjct: 987  ELSAVMFP 994


>gi|15615731|ref|NP_244035.1| DNA polymerase III alpha subunit [Bacillus halodurans C-125]
 gi|14194680|sp|Q9K838|DPO3A_BACHD RecName: Full=DNA polymerase III subunit alpha
 gi|10175791|dbj|BAB06888.1| DNA polymerase III alpha subunit [Bacillus halodurans C-125]
          Length = 1116

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/1024 (34%), Positives = 589/1024 (57%), Gaps = 42/1024 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VH+ VHS Y+LL     +  +++K  A Q  A+A+TD + ++ A+ F +    +G++PII
Sbjct: 4    VHIHVHSEYTLLSSMCRIPALVEKAKAAQFSALALTDRHVMYGAVPFYKACKESGLKPII 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +   ++ +              ++L   + +GY+ L++L + +   ++ ++   +
Sbjct: 64   GMETTVRFAEDRE------------SDLLLYARSNKGYEHLLKLSTIIQCREEKEKY--V 109

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR 190
                L     + L ++   S G +       + +  E+ +   K   G + +Y+ +Q   
Sbjct: 110  TWEELLAYKDDLLYVI-PYSGGFVRACLEDEALERGERFIQFLKDHLGGESVYLEIQ--- 165

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G DR +   + QLA    +PLV + +   L  ED +A  V+ A+    +V  + R     
Sbjct: 166  GTDRSKVEPINQLAAKLAIPLVCSQHIQVLEREDLDAWKVIQAIREGVLVE-ELRIEQEE 224

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            D      +EM   F   PEAL+NT ++A RC   L +  P LP+F        ++  E+ 
Sbjct: 225  DVCFFTLTEMEQTFRAYPEALQNTKKLADRCHVELTLGKPRLPKFQTPN----EQSAEDY 280

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     G + R  +         ++  QRL  EL VI RM FS YFLIV DF+++A++ 
Sbjct: 281  LRKLCEQGAKERYGE------EWTKEKAQRLGEELAVIERMGFSDYFLIVWDFMRFAREA 334

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I  GPGRGS AGS+ AY L ITD+DPL + LLFERFLNP+R+S+PD D+DF   RR+EV
Sbjct: 335  SIVTGPGRGSVAGSLVAYVLFITDVDPLHYDLLFERFLNPERISLPDIDLDFPDHRREEV 394

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I YV+ KYG  RVAQI+TFG+L A+A++RDVG+AL +P + ++++ K I   P   + ++
Sbjct: 395  IVYVKKKYGANRVAQILTFGTLAARASVRDVGKALAIPPNVIEKISKEISGRPGMTL-VK 453

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A  ++ R R+   A     +++++++K+EGL RH STHAAG+VI ++PL++++ +    +
Sbjct: 454  AYNENERLRQLVHASDEAQKVMKLARKVEGLPRHTSTHAAGVVISEQPLTEVIALQHG-Q 512

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETY 609
             ++P+TQ  M+ +E  GLIK DFLGL+ LTLL+  +  + +      ++  +P +D +T+
Sbjct: 513  GEVPLTQGTMETVEDVGLIKMDFLGLRNLTLLEMVVKRVRETYGHSLNVKQLPLNDAKTF 572

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR+ L  ++P+   DI+A+ +LYRPGP++ I  Y   K G +
Sbjct: 573  ALLAKGETTGVFQLESGGMRKVLRELKPNTFADIVAVNALYRPGPMEFIPDYIQGKEGTK 632

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +I  +HP ++P+L  T GVI+YQEQ+MQIA  ++G+SL EAD+LRRA+ KK  E + +Q+
Sbjct: 633  EITYLHPDLEPILSSTYGVIVYQEQIMQIAAKMAGFSLGEADLLRRAISKKKGEALRQQE 692

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E F++GA + G  +  A  I+EL+ +FA+YGFNKSHA AY++++YQ A++K HYP  F A
Sbjct: 693  EAFVTGAVRQGYEQETAKKIYELIVRFANYGFNKSHAVAYSMLAYQLAYLKAHYPSSFYA 752

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A  +   +  EK+++  Q+ +Q  I+++PPS++   + F   +  + + L  ++ V    
Sbjct: 753  ALASTIWNQPEKLERLLQEMKQQGIRVLPPSLSKSDIHFSEEEEGVRFPLLPLRYVSVRA 812

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
             R +++A  + P  SL D CSRVD + +  RV+ESL+ AGALD  G  R  LL +++   
Sbjct: 813  IRELIKARREAPVRSLFDLCSRVDGRIVTSRVMESLIKAGALDELGE-RATLLANIEEAF 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            ++A+ V++ +      +F        ++    K        +   E+  +GFY SGHPL 
Sbjct: 872  QFAEQVKEFQE-NTGGLF----QLSVEEPEYIKVEPLTDLEKLAYEKEAVGFYLSGHPLL 926

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
             Y   LR+     Y   +       ++LA M+   ++ +T++G  +G++T S+   E+EA
Sbjct: 927  AYTESLRQYDRLTY---LEGTERRFVKLAGMIHRIRRIRTKRGEVMGFLTMSDETGEWEA 983

Query: 1030 NFFP 1033
              FP
Sbjct: 984  VVFP 987


>gi|73666820|ref|YP_302836.1| DNA polymerase III alpha subunit [Ehrlichia canis str. Jake]
 gi|72393961|gb|AAZ68238.1| DNA polymerase III, alpha subunit [Ehrlichia canis str. Jake]
          Length = 1123

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 464/1026 (45%), Positives = 655/1026 (63%), Gaps = 38/1026 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ HS YSLL G + + ++++       PA+A+TD+ NLF +LEFS  A  +GIQPI
Sbjct: 5    FVHLRSHSDYSLLHGMVKIESLVNLCVQHNMPALALTDSGNLFGSLEFSDCASNSGIQPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC + I                  +  ++LLV    GY  ++ LVS  +  DQ  +  R
Sbjct: 65   IGCNIMISYNG------------DNIGELILLVKNQVGYSNIVNLVSNSFRNDQSGKINR 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L+ L  +  +G+I+LTGG  G + +    N        +      F   LYV LQRH 
Sbjct: 113  IDLNTLISL-KDGIIVLTGGHDGFLAQLLLGNVIDYG--IIDKLLLAFKGNLYVELQRHN 169

Query: 191  GYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              +    E  +++ AY  ++PLVATN+ LF   ED+ AHDVL  ++    ++Q+DR   T
Sbjct: 170  IEEEKLIERTLIKFAYEKDVPLVATNDILFARREDFLAHDVLSCISDGNYIAQEDRKMFT 229

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +HY K+ +EM  +F D+PEA+ NTV IA+RCSF+ ++  P+LP F         + E  
Sbjct: 230  EEHYFKSSNEMHELFVDIPEAISNTVLIAQRCSFMPEIRKPMLPHFPCSSG----RNESQ 285

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL ++A+ GL  RL    ++       Y +RL +EL++I  M ++GYFLIV+DFI W+K+
Sbjct: 286  ELISQAIDGLNSRLKDSNLS-KEQTSKYYERLHYELDIIISMDYAGYFLIVSDFICWSKR 344

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR+SMPDFDIDFCQ+ RD 
Sbjct: 345  NDIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDRISMPDFDIDFCQEGRDH 404

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS- 488
            VI YV+ KYG   VA IITFG LQAKA LRDVGR +QMPY QVDR+CK+IP++P  PV+ 
Sbjct: 405  VIEYVRKKYG--YVAHIITFGKLQAKAVLRDVGRVMQMPYFQVDRICKMIPHNPVRPVTL 462

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +AI  D   ++ R  D +V +LLEIS KLEGLYRH S HAAGIVI DR L +L+P+Y D
Sbjct: 463  SEAIEMDKNLQKERDDDETVAKLLEISLKLEGLYRHVSIHAAGIVICDRRLEELLPLYYD 522

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
              S LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ +    +   G  VD+S IP +D +T
Sbjct: 523  NVSFLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICHLVNNGGQNVDISRIPLNDKKT 582

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            Y +L+   ++G+FQLESSGMR+ +  ++PD I DIIAL+SLYRPGP+DNI +Y  RK+G 
Sbjct: 583  YEMLSAGDSVGVFQLESSGMREVISKLKPDNINDIIALISLYRPGPMDNISIYIARKHGF 642

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EK   IHP+++ +LKET GVIIYQEQVM+IA++++GYSL EAD+LRRAMGKKIKEEMD Q
Sbjct: 643  EKPDYIHPILEGVLKETFGVIIYQEQVMEIAKIMAGYSLGEADLLRRAMGKKIKEEMDNQ 702

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  FISGA  NGI +  A  IF+L+AKFA YGFNKSHAAAYA+ISYQTA++K +Y +EF 
Sbjct: 703  RRAFISGAINNGIEEEKASYIFDLVAKFAGYGFNKSHAAAYALISYQTAYLKANYTLEFF 762

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGT 847
             ASM L++ + +K++  C  A+   I+I+PP +NT  V F +   + I Y+L A+K VG 
Sbjct: 763  TASMNLDITDKDKLEMLCHQAKLHGIKILPPDINTSKVFFTIEGSSSIRYALGALKNVGQ 822

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
             +A+ I++   D  +  + DF  RV +K +++R+LES++ AG LD    +R QL +S+  
Sbjct: 823  HSAKEIVD---DIAYKDIWDFIDRVSTKCVHKRILESIIKAGVLDSIHSNRKQLFESVFL 879

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
                 ++ + N      ++F     T      L +        + +NE   +GFY + HP
Sbjct: 880  FLDIIEYNKYNANFNQFSLF-----TDRAHYKLSETDDWTKEEKLDNEFSSIGFYLNHHP 934

Query: 968  LDVYKPILRKMGIKGYE-ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            ++ YK +L K+ I     +  +       R+  ++ S + + +    +   VT S+P   
Sbjct: 935  MENYKCLLEKLNIGFINYDDRSAYNN---RIVGIISSVKVR-SASRDKFAVVTLSDPYNI 990

Query: 1027 YEANFF 1032
            +E  F+
Sbjct: 991  HEIAFY 996


>gi|294635137|ref|ZP_06713647.1| DNA polymerase III, alpha subunit [Edwardsiella tarda ATCC 23685]
 gi|291091473|gb|EFE24034.1| DNA polymerase III, alpha subunit [Edwardsiella tarda ATCC 23685]
          Length = 904

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/922 (41%), Positives = 553/922 (59%), Gaps = 39/922 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + + P F+HL VHS YS+++G    + ++ K+AA   PA AITD  NL   ++F   A  
Sbjct: 1   MAE-PRFIHLHVHSDYSMIDGLAKTSPLVKKVAALGMPAFAITDHTNLCGLVKFYGSAHG 59

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGI+P++G  +            + +     + S+ +L S   GYQ L +L+S  Y    
Sbjct: 60  AGIKPLVGADV----------LMRSEMMGDELASLTILASDNTGYQNLTQLISHAYQRGY 109

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
           G +   I   WL +   +GLI+L+G   G + +     +     + +  +++ F D  ++
Sbjct: 110 GAEGPTIDRDWLVQY-RQGLILLSGARQGDVGKLLLRGNQASVNECVDFYQRYFPDCYFL 168

Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            L R    D        V+LA   +LPLVA+N+  FL   D++AH++ +A+     +   
Sbjct: 169 ELVRTGRPDEENYLHMAVELAQQRDLPLVASNDVRFLEASDFDAHEIRVAIHDGYTLDDP 228

Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            RPR  +   Y+++ +EM  +F+DLPEAL+N+VEIA+RC+  +++       +   +   
Sbjct: 229 KRPRNYSAQQYMRSEAEMCELFADLPEALQNSVEIAKRCNVTIRLGE-----YFLPQFPT 283

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYH---AQDYRQRLDFELNVIARMKFSGYFLI 359
            +   E  L  KA  GLE RL      +         Y +RL+ EL VI +M F GYFLI
Sbjct: 284 GEMTTEAFLVKKAHEGLEERLTFLFPDEAERARCRPPYDERLEIELKVINQMGFPGYFLI 343

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V +FIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYSLKITDLDPLAFDLLFERFLNPERVSMPDFD 403

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           +DFC ++RD VI +V   YG E V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404 VDFCMEKRDRVIDHVAEMYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
           P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKI 522

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
           +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R  +  L 
Sbjct: 523 TDFAPLYCDAEGNHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRARHGLE 582

Query: 600 L-----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                 IP DD +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP
Sbjct: 583 PVDIAAIPLDDQKSFDILQRAETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGP 642

Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
           + + +V       +   +         H  + P+L+ T GVI+YQEQVMQIAQ+L+GYSL
Sbjct: 643 LQSGMVDNFIDRKHGREELSYPDREWQHESLKPVLEPTYGVILYQEQVMQIAQVLAGYSL 702

Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             AD+LRRAMGKK  EEM KQ+  F  GA  NG+   +A++IF+L+ KFA YGFNKSH+A
Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRSVFEEGARNNGVDGELAMHIFDLVEKFAGYGFNKSHSA 762

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
           AYA++SYQT W+KTHYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    
Sbjct: 763 AYALVSYQTLWLKTHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGQYH 822

Query: 828 FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS---ADKPFDSLEDFCSRVDSKKLNRRVLE 883
           F V D   I Y + AIKGVG      I+EA        F  L D C+R D+KKLNRRV+E
Sbjct: 823 FHVNDEGEIVYGIGAIKGVGEGPIEAIIEARNRGEQGYFKDLFDLCARTDTKKLNRRVME 882

Query: 884 SLVFAGALDCFGYSRMQLLQSL 905
            L+ +GA D  G  R  L+ SL
Sbjct: 883 KLIMSGAFDRLGPHRAALMSSL 904


>gi|58584756|ref|YP_198329.1| DNA polymerase III alpha subunit [Wolbachia endosymbiont strain TRS
            of Brugia malayi]
 gi|58419072|gb|AAW71087.1| DNA polymerase III alpha subunit [Wolbachia endosymbiont strain TRS
            of Brugia malayi]
          Length = 1112

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 464/1025 (45%), Positives = 657/1025 (64%), Gaps = 42/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+VHS YSLLE ++ +  ++     ++ PA+AITD+ NLF +LEFS+ A + GIQ I
Sbjct: 2    FIHLRVHSVYSLLESSVKIEELIGLCLRNKMPAVAITDSGNLFGSLEFSEYAASRGIQLI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS-V 129
             GC + +   +                 I+LL    +GY  L+ LVS  +   +      
Sbjct: 62   TGCNIIVRYSE-------------QNLPILLLTKNEQGYTNLVTLVSESFRKRKNNSDIP 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L  + + GLI LTGG  G + +  F     + EK LL     F   LYV LQRH
Sbjct: 109  YVDFDELLNL-STGLITLTGGCDGILAQLLFRQDKGIVEKLLL----AFNGHLYVELQRH 163

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +   E  ++  AY H +PLVATN+  F +  DYEA+D+L  ++  +   + +R ++
Sbjct: 164  GLNKELELEETLIDFAYQHNIPLVATNDVFFPNRSDYEAYDILTCISEGSYTLENNRKKL 223

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            T +HY K+ +EM  +FSD+PEA+ NT+ IA+RCS++ +   PILP+F  +E     K E 
Sbjct: 224  TTEHYFKSVAEMEKLFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCRE----NKTEN 279

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             EL+ +A AGLE+R+A          + Y  RL++EL+VI  M ++GYFLIV+DFI+W+K
Sbjct: 280  EELKEQATAGLELRIAN---KIDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSK 336

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N IPVGPGRGSGAGS+ A+AL ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++RD
Sbjct: 337  ANGIPVGPGRGSGAGSIVAWALQITDLDPIKFGLIFERFLNPDRISMPDFDIDFCQEKRD 396

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI YVQ KYG   VAQIITFG LQA+A LRDVGR LQM Y+QVD++ K++P +P +PV+
Sbjct: 397  LVIDYVQKKYG--YVAQIITFGKLQARAVLRDVGRVLQMSYTQVDKISKMVPFNPVNPVT 454

Query: 489  -LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              QAI  D   ++ R +D  + +LL+IS KLEG+YRH STHAAGIVI D+ L   VP+Y 
Sbjct: 455  LSQAIEFDQNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVYY 514

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D  S LP+TQ++MK++EKAGLIKFDFLGL TLTL+      + Q G K+D++ +  +D +
Sbjct: 515  DPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINQNGKKIDIASVSLNDRK 574

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L+   ++G+FQLESSGMR+AL  ++PDCIEDIIAL+SLYRPGP+DNI  Y  RK+G
Sbjct: 575  TYEMLSNGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYIARKHG 634

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             EK   IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIK EMDK
Sbjct: 635  LEKPDYIHPLLERVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKAEMDK 694

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            Q++ F+ GA+KNG+    A  IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+EF
Sbjct: 695  QRKLFVQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPLEF 754

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A M L +D+ +K+  F   A+   + ++ P ++    +F +    I Y +AA++ VG 
Sbjct: 755  FTALMNLNIDDRDKLNLFYHAAKFSGVSVLLPDISKSKAEFSIEGKHIRYGIAALRNVGF 814

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            + A  I+   +   +  + +F         N+R LESL+ +GA D    +R QL +S+D 
Sbjct: 815  SIAEGIVNTRSS-TYKDIWEFIQN-SGHITNKRALESLIKSGACDSVHKNRKQLYESIDT 872

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +  +A    ++R +    +F +       K  LEK    N   + E+E   LGFY + HP
Sbjct: 873  LVYFANKNRQDRESNQAVLFGNFNVL---KPKLEKVKDFNEEEKLEHELFSLGFYLTSHP 929

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L+ ++ +L K+ I    E          + A ++++ + + + +G R   +T S+P    
Sbjct: 930  LEKFRTLLEKLNIGFIGE------NKIAKTAGVILNVRMRTSERG-RFVILTLSDPHNVS 982

Query: 1028 EANFF 1032
            E  F+
Sbjct: 983  EIAFY 987


>gi|51893023|ref|YP_075714.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
            14863]
 gi|71151840|sp|Q67N73|DNAE2_SYMTH RecName: Full=Error-prone DNA polymerase
 gi|51856712|dbj|BAD40870.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
            14863]
          Length = 1085

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/1076 (29%), Positives = 503/1076 (46%), Gaps = 89/1076 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VHS +S L+GA  L++++ + A    PA+A+TD NN+  A+ F +KA  AGIQP
Sbjct: 2    SFVHLHVHSPFSFLDGASRLDDLIAEAALHGMPALALTDHNNVSGAVRFQRKAQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-------- 121
            I G +L ++                    + LL +  +GY  L  L++  +L        
Sbjct: 62   IQGAELTLE----------------GGYHLTLLATGPKGYANLNRLITAAHLGQEPRATP 105

Query: 122  -------LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
                       +      LS L    T+GLI L+G   G I           AE     +
Sbjct: 106  GAMFALAPGHDRLQPACPLSALS-HDTDGLIALSGCRRGEIPSLILRGRLAEAEAAARRY 164

Query: 175  KKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
               F  R Y+ L   R   ++     +  L     LPLV T+N    + E++  HD+L  
Sbjct: 165  AAWFPGRFYLELHDERLPGEQALNRALRDLGEALGLPLVVTSNVHHRTREEFFVHDLLTC 224

Query: 234  VAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            V   T + Q    R      YLK    M+  F + PEA++NT+ IA RC  +L + A + 
Sbjct: 225  VRTLTRIDQPHPERPLNDQRYLKPPEVMIERFREFPEAVKNTLAIAERCRPVLDLDARLH 284

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P F   +           L +    G            G   +  R+RL+ EL +I R+ 
Sbjct: 285  PEFQTPDGSH----PAAYLTHLVYDGAAR-------RYGRITERIRRRLEHELTIITRLG 333

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            +  YFL+V D +++A++  I    GRGS A S  AY L ITD+D +   LLFERF++ +R
Sbjct: 334  YEDYFLLVWDVVRFARERGIRCA-GRGSAADSAVAYCLFITDVDAIERGLLFERFMSLER 392

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
               PD DIDF   RRDEV  YV  KYG + VA + T+ + QA++A+RD+G+A+    + +
Sbjct: 393  AQKPDIDIDFDARRRDEVAAYVYRKYGADHVASVCTYNTFQARSAVRDLGKAMGFQEADL 452

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            D L K IP        L  +A     R++ +     ++L++ ++++    R   TH  G+
Sbjct: 453  DYLAKRIPWHAGADEILTVMARYPELRQSGIPWHKFEQLVQAAERVARFPRFIGTHLGGL 512

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            VI  RPL ++ P+         V QF+ +++E  GL+K D L L+T T +  ++  +   
Sbjct: 513  VISRRPLLEVTPLQMAA-KGQVVCQFDKEYVEDLGLVKLDLLSLRTFTAVDDAVRAI--- 568

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +D   IP  D  TY +L    ++G+FQLES   R     ++PD  EDI+A V++ RP
Sbjct: 569  -GDIDYEQIPHGDAATYEMLGVGESIGVFQLESPAQRALQARLKPDRFEDIVASVAIIRP 627

Query: 653  GPIDNIVVYNN--RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GPI   +V     R++GKE++  +HP + P+L++T GV+++QEQV++IA  ++G++  EA
Sbjct: 628  GPIKGNMVEPFLARRHGKEEVTYLHPKLKPILEKTYGVVLFQEQVIEIATAVAGFTPGEA 687

Query: 711  DVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            D LRR M   + +E+M+     F   A+  G+   +A  IF  +  +A YGF ++HAAA+
Sbjct: 688  DQLRRVMTHARNREDMEAIGRLFRQKAAAAGVDPAVADTIFSYIQGYASYGFCEAHAAAF 747

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A  +Y+TA++  HYP E+ AA M+ +      I     +AR+  + ++P  +N     F 
Sbjct: 748  ANTAYKTAYLVRHYPAEYFAALMSAQPMGYYPINTLAVEARRRGVGLLPVDINRSEEAFT 807

Query: 830  VGD-----------------------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            V +                         I   L A+KGVG   A  I+ A     F SL 
Sbjct: 808  VEEWSREAWEAFWGMEPFAPEYPATGKAIRIGLRAVKGVGEPAAAAILAARDGGEFRSLA 867

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            D   R     + R  LE+LV AGA D    +R   L  + ++ + A+ + + R      +
Sbjct: 868  DLVRRTGG-AVPRGPLEALVLAGAFDRLHSNRRAALWQVAHLLE-AERIRQERGAGQAGL 925

Query: 927  FAHEKGTFSDKITL----------EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
               +      +                +   ++ R+  E  + G     H +   +  L 
Sbjct: 926  LDGDAPGLGAQAAEALEAASPQGTPAIADFGAAERYLKEYELTGLMVRTHFMRFVRERLA 985

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + G    +E      G  +++A + V   +  TR G  + +++  +     +   F
Sbjct: 986  REGYLTAQEVRQRRAGELVKVAGLPVCPHRPPTRSGKIVVFLSLEDETGLIDLTIF 1041


>gi|289434854|ref|YP_003464726.1| DNA polymerase III, alpha subunit [Listeria seeligeri serovar 1/2b
            str. SLCC3954]
 gi|289171098|emb|CBH27640.1| DNA polymerase III, alpha subunit [Listeria seeligeri serovar 1/2b
            str. SLCC3954]
          Length = 1108

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/1028 (35%), Positives = 578/1028 (56%), Gaps = 41/1028 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S+++++ K      PA+AITD N L+ A+EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASVDSLVAKAKEYHYPALAITDKNVLYGAVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + I          QG         ++L+  T  GY  L+++ S +   ++G++  +
Sbjct: 63   IGMTVTI----------QGYLNPINSYELILIAETTAGYHELLKIASAIQTREEGQELPQ 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
               SWL+   ++ LI ++ G+ G ++R     +   A +       +FG D +Y++LQ+ 
Sbjct: 113  ---SWLRAY-SKDLIAISPGAKGEVERLLMEENRDGALEAYQNLVAIFGGDSVYLSLQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                     ++       ++  VAT N  ++  +D +A +VL A+  +  V  +  P   
Sbjct: 169  NP---RLFGKIETFCMEEKVRAVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWETLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P+++   +       +D   +  E T E+A RC   + +   +LPRF      +  +   
Sbjct: 226  PNYFTSQKEIEREWQTDFEKQVCEETGELAARCKVEIALDQHLLPRFPL----NADQSAS 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR  A AGLE R        G  A DY++RLD+EL VI  M F+ YFLIV D I++++
Sbjct: 282  EVLRQTAYAGLEER--------GLMAPDYQERLDYELKVITEMGFADYFLIVWDVIRYSR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RRD
Sbjct: 334  EAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     + 
Sbjct: 394  EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +AI +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V +   
Sbjct: 453  QKAIQESPRLENHIKSSKINEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHE 607
               D  +TQF M  +EK GL+K DFLGL+ L+LL + L      R   + L+ I  +D +
Sbjct: 513  S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNREKPLTLAAISLEDEK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  T  T G+FQ ES G+R+ L  ++P   EDI+A+ +LYRPGP++ I  +  RK+G
Sbjct: 572  TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDIVAVDALYRPGPMEQIDTFIARKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KE I   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++
Sbjct: 632  KEAIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ GA   G S++ A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K +YP  F
Sbjct: 692  ERIHFVEGARSKGYSESSANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKANYPAAF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVG 846
            +++ ++    N +KI ++  +A+ + I+++ PS+N     F++  +N I YS   I+ V 
Sbjct: 752  MSSLLSSVFGNDDKISQYITEAKNYGIRMLAPSINHSNYYFQMEGENAIRYSFRVIRKVP 811

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
            T     I+      PF    DFC R+  K L   +LE+LV +G  D FG  R  +L ++D
Sbjct: 812  TKFILEIINERKKAPFQDFFDFCERMPHKMLTETILEALVLSGCFDEFGEDRATVLATID 871

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965
             + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y S 
Sbjct: 872  AVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKAAPISIDEKLEKEKLYTGQYVSA 929

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+  Y+  L+ + I    +      G N R+A  V   +  +T+KG  + ++T S+  K
Sbjct: 930  HPVSYYQTKLQNLAITRLADI---HSGKNYRVAVYVHEIKSIRTKKGETMCFLTISDDTK 986

Query: 1026 EYEANFFP 1033
            E  A  FP
Sbjct: 987  ELSAVMFP 994


>gi|303256875|ref|ZP_07342889.1| DNA polymerase III, alpha subunit [Burkholderiales bacterium 1_1_47]
 gi|302860366|gb|EFL83443.1| DNA polymerase III, alpha subunit [Burkholderiales bacterium 1_1_47]
          Length = 1148

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/1024 (37%), Positives = 593/1024 (57%), Gaps = 30/1024 (2%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   FVHL++H+ +S+ +G L+   ++ K  A    A+AITD   +F  + F + A A
Sbjct: 1    MTQ--DFVHLRMHTEFSIKDGMLNPKKVVHKAIASGMKALAITDATAMFGDVIFYKAASA 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PI+G    I    N                ++ L    +GY  L +L+SR +L +Q
Sbjct: 59   AGIKPILGGDCSITNHYNR----------DDYLRLLFLARNHQGYLTLCDLLSRAWLTNQ 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K    + L W+     +GLI+L+G ++G I +A    S   AE+      + F    ++
Sbjct: 109  YKDRGEVDLDWITPEMADGLIVLSGFNTGAIGKAILNGSLSAAEQEARRLSQKFP-HFFM 167

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             LQR  R  D    ++ V+LA    LP+VAT    F + ED+E H+  +A+A    ++ K
Sbjct: 168  ELQRVGRPNDEMLVAESVKLAKKLGLPVVATQPIQFENSEDFEFHEARVAIADGFTLANK 227

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             RPR  TP  Y + + EM  +F D+P A+EN+VEIA+RC+  +++  P LP F   +   
Sbjct: 228  ARPRIYTPQQYFRTKEEMCELFKDIPSAIENSVEIAKRCNVTIKLGKPQLPIFPTPDGMS 287

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            + K+   +L  + +      L      +      Y++RL+ E+ +I  M F GYFLIV D
Sbjct: 288  L-KDYMAQLAREGLDRRLKVLYPDEKKREAEFPRYKERLEREIKIIQDMDFPGYFLIVQD 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL + LLFERFLNP+R+SMPDFD+DF
Sbjct: 347  FINWAKTHGCPVGPGRGSGAGSLVAYSLGITDLDPLAYDLLFERFLNPERVSMPDFDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ+ R  VI YV++KYG E V+QI TFG++ AK  ++DVGR L M YS+ DRL ++IP  
Sbjct: 407  CQNNRGRVIEYVKSKYGEESVSQIATFGTMGAKGVIKDVGRVLDMSYSEADRLSRMIPTR 466

Query: 483  PAH-PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            P H     +A++++ +FR     +P   +L+E + KLEG  R    HA G++I    L  
Sbjct: 467  PGHNTTLEEALSEEPQFRAEVRNNPQARKLIEYALKLEGTTRSLGIHAGGVLIAPGKLID 526

Query: 542  LVPMYRDVR-SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLS 599
              P+Y      +  ++ ++ K +E  GL+KFDFLGL TLT+++++LD+     GV+ D+ 
Sbjct: 527  FCPLYAAGMLPENVISMYDKKDVEAVGLVKFDFLGLTTLTIIERALDYIEKNTGVRPDIE 586

Query: 600  LIPFDDHETY-HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             +  DD +TY  +  T  T+ +FQ ES GM + L   +P  + D+IAL +LYRPGP+D I
Sbjct: 587  HMECDDEDTYKKIFQTGDTVAVFQFESPGMHKLLIDAKPTQLSDLIALNALYRPGPMDLI 646

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              + + + G++K     P + P+L++T G+++YQEQVM +AQ + GYSL  AD+LRRAMG
Sbjct: 647  PDFLDIRAGRKKAEYADPRLIPILEDTAGIMVYQEQVMLVAQKIGGYSLGGADILRRAMG 706

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK   EM++Q + FI GA+KNG+S+ +A ++FEL+ KFA YGFNKSHAAAY+ ++Y+T W
Sbjct: 707  KKDVAEMERQSKVFIEGAAKNGVSEEVAAHLFELMRKFAGYGFNKSHAAAYSYVAYKTGW 766

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYY 837
            +K +YP EFLA+S++  M + EK  K   DA++ +++++ P +N    ++       I  
Sbjct: 767  LKNYYPAEFLASSLSEVMTDPEKSLKILMDAKRHSVKLLGPDINESEFNYTSPKTMEIRM 826

Query: 838  SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L A+KGVG+  A  I      + PF    D   RV S+ + +++++    AG  D    
Sbjct: 827  GLGALKGVGSAPAEAIKAEREQNGPFKDPFDLVKRVGSQLITKKIIQVFAMAGVFDSIEP 886

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R +  ++ D + + AQ  E  +     ++F  E    S+++ +++ +  +   R E EQ
Sbjct: 887  NRRKWFENADVVVQSAQ--ENEKAADQFSLFGEEP---SNEVPIKEVAPWSDRTRMEKEQ 941

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             VLGFYFSGHPL+ Y+  L++           +       +A M +  +Q++ + GS   
Sbjct: 942  YVLGFYFSGHPLEAYQSELKR-NFGALVAGTESENPGEYLVAGMYLGCEQRRGKDGSP-- 998

Query: 1017 WVTF 1020
            +VT 
Sbjct: 999  FVTL 1002


>gi|46907805|ref|YP_014194.1| DNA polymerase III, alpha subunit [Listeria monocytogenes str. 4b
            F2365]
 gi|46881074|gb|AAT04371.1| DNA polymerase III, alpha subunit [Listeria monocytogenes serotype 4b
            str. F2365]
          Length = 1108

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1028 (35%), Positives = 577/1028 (56%), Gaps = 41/1028 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + I          QG         ++L+  +  GY  L+++ S +   ++G     
Sbjct: 63   IGMTVTI----------QGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---PE 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   +  LI ++ G+ G I+R     + + A +      ++FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                    +++   +    +P+VAT N  ++  +D +A +VL A+  +  V     P   
Sbjct: 169  NP---RLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P+++           ++    A   T E+A RC   + ++  +LPRF      +  +   
Sbjct: 226  PNYFTSQEDMERDWQTEFEKRACLETGELADRCHVEIALNQHLLPRFPL----NEGQNAS 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I++++
Sbjct: 282  DVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RRD
Sbjct: 334  EAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     + 
Sbjct: 394  EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V +   
Sbjct: 453  QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
               D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D +
Sbjct: 513  S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLEDKK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK+G
Sbjct: 572  TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++
Sbjct: 632  KEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F
Sbjct: 692  ERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVG 846
            +++ ++    N +KI ++  +A+ + I ++ PS+N     F+V +   I YS   I+ V 
Sbjct: 752  MSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVP 811

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
            T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D
Sbjct: 812  TKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965
             + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y S 
Sbjct: 872  AVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ +K
Sbjct: 930  HPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986

Query: 1026 EYEANFFP 1033
            E  A  FP
Sbjct: 987  ELSAVMFP 994


>gi|78187124|ref|YP_375167.1| DNA polymerase III, alpha subunit [Chlorobium luteolum DSM 273]
 gi|78167026|gb|ABB24124.1| DNA polymerase III, alpha subunit [Chlorobium luteolum DSM 273]
          Length = 1188

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/1072 (34%), Positives = 554/1072 (51%), Gaps = 63/1072 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ YS+    +    +  K A+    ++A+TD   +F+  E    A  AG++ 
Sbjct: 2    DFVHLHAHTHYSMQSSPIFPGELFTKAASLGMKSVAVTDYCAIFNMPELFSDAAGAGVRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG       +  L    + +      PS+VLLV    GY+ L  L+SR           
Sbjct: 62   IIGS------ELLLLEGEEHQQKQAQAPSLVLLVQNETGYRNLCVLLSRASKDGFHNGMP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    L+    +GL  L+  SSG I RA    ++  AE +   ++++FG+R ++ LQRH
Sbjct: 116  HVDPKLLETYH-DGLFCLSAYSSGRIGRALLSGAAGEAESQAAYYREVFGNRFHLELQRH 174

Query: 190  RG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247
               YD    +  V L     +PLVATNN  +L   D   +  ++A      + SQ     
Sbjct: 175  STHYDDELNAATVALGEKLSIPLVATNNVHYLERRDAGCYRAMVANRTKEKLSSQNLLAL 234

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               ++YLK+  EM  +F D    L  T+ IA  C++      PILP F   E      +E
Sbjct: 235  PGKEYYLKSPEEMGLLFDDRYGELSATLRIAEACTYAFSEKDPILPHFPVPEAFP---DE 291

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR+    G   +        G   +D ++R++ EL VI +M FS YFLIV+D IQ +
Sbjct: 292  AAYLRHLTWEGAREKYGDN-PEDGITPEDVKERIELELGVIEKMGFSSYFLIVSDLIQAS 350

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +K    VGPGRGS AGS+ AY   IT IDPL++ LLFERFLNP+R+SMPD DIDF    +
Sbjct: 351  RKMGYSVGPGRGSAAGSIVAYLTGITRIDPLKYKLLFERFLNPERLSMPDIDIDFTPVGK 410

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +V+ Y   KYG E VA+++  G+L AKAA+RD  R L++P S  DRL KL+P+ P   +
Sbjct: 411  QKVLEYTVEKYGPESVAKVVAVGTLGAKAAIRDAARVLEVPLSVADRLAKLVPSRPGTTL 470

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                +      RE   + P +  L++ ++ LEG  R+ S HA  +VI + PL + VP+Y 
Sbjct: 471  EKALLE-VKELREYADSTPEIRELMDYARALEGRARNVSMHAGAVVITEGPLEEQVPLYV 529

Query: 548  -----------------------------DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                                                VTQF+  WIE AGL+K D+LGL T
Sbjct: 530  SNKIETEERQYADEIDLDEPAAGKPKSADGAGEKQVVTQFDKNWIETAGLLKIDYLGLVT 589

Query: 579  LTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            L ++ ++L  + +R  V ++L  +P +D +T+ +       GIFQ ESSGM+  +  +QP
Sbjct: 590  LAVIDETLRLIKKRHGVDIELEEVPMNDRKTFKIFQEGKMAGIFQFESSGMQSYMTRLQP 649

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNR--------KNGKEKIVSIHPLIDPMLKETQGVI 689
              I DIIA+ +LYRPG ++  +             K+G+E I  +HP+++ +LKET GVI
Sbjct: 650  TQIGDIIAMSALYRPGALNARIDEKRNAVDLFVDRKHGRETIDYMHPMLETILKETYGVI 709

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI+Q++ G+S+++AD LR+AMGKK  E M+K K  F+ G  + G+  ++A  +
Sbjct: 710  VYQEQVMQISQVMGGFSMAKADNLRKAMGKKKPEIMEKFKADFVKGGVEQGVHDSLATRV 769

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            FEL+A+FA YGFNKSH+AAY V++Y T W+K HY +EF+ A +  E+ + E++K    +A
Sbjct: 770  FELMAEFAGYGFNKSHSAAYGVLAYWTGWLKAHYTIEFMTAILNSEIGDTERMKHLTDEA 829

Query: 810  RQFNIQIMPPSVNTPCVDFKVGD----NRIYYSLAAIKGVGTTTARHIMEA--SADKPFD 863
            + F I I+PPS+N     F V D      I   L+AIK VG   AR I+ A     + + 
Sbjct: 830  KSFGISILPPSINKSDALFSVDDSTGPPAIRVGLSAIKQVG-GAARAIITARLRRKRDYL 888

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
            +L D  + VD + +NR+ LE L+  GA D     R +LL ++D   K+ Q   +  T   
Sbjct: 889  NLFDLTASVDQRVMNRKALECLILCGAFDEIDPHRARLLANIDKAIKFGQIENRAVTLGQ 948

Query: 924  ENIFAHEKGTFSDKITLEKFS---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
               F+ E+GT  +                 +  +E++++GFY S HPL  ++        
Sbjct: 949  CGFFSVEEGTVEEDAHYPDMEPAAEMPEPEKLMHEKKLVGFYLSRHPLSPWRRDWAAFSS 1008

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                           R+  +VVS +    RKG ++ + +  +   + +   F
Sbjct: 1009 LQL-HMREITLSRQYRVIGLVVSTKPYCDRKGKQMLFGSIEDFTGKADFTVF 1059


>gi|326559880|gb|EGE10280.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis 7169]
          Length = 1240

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/1087 (35%), Positives = 583/1087 (53%), Gaps = 86/1087 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    AGI+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124
            IIG ++ +         +  K       S++L   +  GYQ L+ L+S  Y         
Sbjct: 62   IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 125  --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT      I +    ++   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILTH--RSEIAQPLLSHNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED-------------YEAHD 229
            Y+ ++R +  D       +  A    + ++A N+  F+                 ++AH+
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232

Query: 230  VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              + +A+S  ++   RPR  T   Y K++ +M  +F+DLP+A++NT  +A RC+  + + 
Sbjct: 233  ARVCIANSYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIKNTRLLASRCNVTITLG 292

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRLD 342
              +LP F   + + I    E   +  +  GL  RL       Q         + Y +RLD
Sbjct: 293  INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L
Sbjct: 349  YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +RDV 
Sbjct: 409  LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQK 517
            R    P+   DR+ K+IP  P   +   A   + + +E      + D      + E+++K
Sbjct: 469  RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKELLTNPDAPDHELALEIWEMAKK 527

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDFLGL+
Sbjct: 528  LEGLTRNVGKHAGGVLIAPNRISDFSAIYCDG-EGHPVSQYDKDDVEAVGLVKFDFLGLR 586

Query: 578  TLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQA 631
             LT+LQ ++D + Q          DL  +P DD + Y  +L    T  +FQLESSGM++ 
Sbjct: 587  NLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKKY 646

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKE 684
            L  ++P  IED+IA+ +LYRPGP+++ +   + +RK+G +++   HP      + P L+ 
Sbjct: 647  LAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLES 706

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  I   
Sbjct: 707  TYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNIDGG 766

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++  
Sbjct: 767  LAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVVF 826

Query: 805  FCQDARQF-NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPF 862
               D R    + I+PPSVN     F V D   I Y L A+KGVG      I+ A  D  F
Sbjct: 827  LLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGAF 886

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSLD 906
              L DFC+RVD KK+ +R LE+L+ AG  D    +                R  L + L 
Sbjct: 887  KDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQLP 946

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                 A    +N+     ++F     +      LE         R   EQ  LG Y +GH
Sbjct: 947  EAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTGH 1005

Query: 967  PLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            PLD Y+  L     +K   +   T +G    +A ++          G RI  V   +   
Sbjct: 1006 PLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDVAFF----GERIV-VKLDDGKG 1059

Query: 1026 EYEANFF 1032
              E + +
Sbjct: 1060 RIEMSCY 1066


>gi|326569634|gb|EGE19686.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis BC1]
          Length = 1240

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/1087 (35%), Positives = 583/1087 (53%), Gaps = 86/1087 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    AGI+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124
            IIG ++ +         +  K       S++L   +  GYQ L+ L+S  Y         
Sbjct: 62   IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 125  --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT      I +    ++   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILTH--RSEIAQPLLSHNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED-------------YEAHD 229
            Y+ ++R +  D       +  A    + ++A N+  F+                 ++AH+
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232

Query: 230  VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              + +A+S  ++   RPR  T   Y K++ +M  +F+DLP+A++NT  +A RC+  + + 
Sbjct: 233  ARVCIANSYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIKNTRLLASRCNVTITLG 292

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRLD 342
              +LP F   + + I    E   +  +  GL  RL       Q         + Y +RLD
Sbjct: 293  INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L
Sbjct: 349  YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +RDV 
Sbjct: 409  LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQK 517
            R    P+   DR+ K+IP  P   +   A   + + +E      + D      + E+++K
Sbjct: 469  RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKELLTNPDAPDHELALEIWEMAKK 527

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDFLGL+
Sbjct: 528  LEGLTRNVGKHAGGVLIAPNRISDFSAIYCDG-EGHPVSQYDKDDVEAVGLVKFDFLGLR 586

Query: 578  TLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQA 631
             LT+LQ ++D + Q          DL  +P DD + Y  +L    T  +FQLESSGM++ 
Sbjct: 587  NLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKKY 646

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKE 684
            L  ++P  IED+IA+ +LYRPGP+++ +   + +RK+G +++   HP      + P L+ 
Sbjct: 647  LAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLES 706

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  I   
Sbjct: 707  TYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVEGAIEQNIDGG 766

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++  
Sbjct: 767  LAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVVF 826

Query: 805  FCQDARQF-NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPF 862
               D R    + I+PPSVN     F V D   I Y L A+KGVG      I+ A  D  F
Sbjct: 827  LLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGAF 886

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSLD 906
              L DFC+RVD KK+ +R LE+L+ AG  D    +                R  L + L 
Sbjct: 887  KDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQLP 946

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                 A    +N+     ++F     +      LE         R   EQ  LG Y +GH
Sbjct: 947  EAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTGH 1005

Query: 967  PLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            PLD Y+  L     +K   +   T +G    +A ++          G RI  V   +   
Sbjct: 1006 PLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDVAFF----GERIV-VKLDDGKG 1059

Query: 1026 EYEANFF 1032
              E + +
Sbjct: 1060 RIEMSCY 1066


>gi|47094219|ref|ZP_00231932.1| DNA polymerase III, alpha subunit [Listeria monocytogenes str. 4b
            H7858]
 gi|226224175|ref|YP_002758282.1| DNA polymerase III (alpha subunit) DnaE [Listeria monocytogenes
            Clip81459]
 gi|47017408|gb|EAL08228.1| DNA polymerase III, alpha subunit [Listeria monocytogenes str. 4b
            H7858]
 gi|225876637|emb|CAS05346.1| Putative DNA polymerase III (alpha subunit) DnaE [Listeria
            monocytogenes serotype 4b str. CLIP 80459]
 gi|328465072|gb|EGF36346.1| DNA polymerase III, alpha subunit [Listeria monocytogenes 1816]
          Length = 1108

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1028 (35%), Positives = 576/1028 (56%), Gaps = 41/1028 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + I          QG         ++L+  +  GY  L+++ S +   ++G     
Sbjct: 63   IGMTVTI----------QGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---PE 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   +  LI ++ G+ G I+R     + + A +      ++FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                    +++   +    +P+VAT N  ++  +D +A +VL A+  +  V     P   
Sbjct: 169  NP---RLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P+++           ++    A   T E+A RC   + +   +LPRF      +  +   
Sbjct: 226  PNYFTSQEDMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPL----NEGQNAS 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I++++
Sbjct: 282  DVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RRD
Sbjct: 334  EAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     + 
Sbjct: 394  EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V +   
Sbjct: 453  QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
               D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D +
Sbjct: 513  S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLEDKK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK+G
Sbjct: 572  TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++
Sbjct: 632  KEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F
Sbjct: 692  ERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVG 846
            +++ ++    N +KI ++  +A+ + I ++ PS+N     F+V +   I YS   I+ V 
Sbjct: 752  MSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVP 811

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
            T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D
Sbjct: 812  TKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965
             + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y S 
Sbjct: 872  AVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ +K
Sbjct: 930  HPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986

Query: 1026 EYEANFFP 1033
            E  A  FP
Sbjct: 987  ELSAVMFP 994


>gi|254824367|ref|ZP_05229368.1| DNA polymerase III [Listeria monocytogenes FSL J1-194]
 gi|293593601|gb|EFG01362.1| DNA polymerase III [Listeria monocytogenes FSL J1-194]
          Length = 1108

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/1028 (35%), Positives = 577/1028 (56%), Gaps = 41/1028 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + I          QG         ++L+  +  GY  L+++ S +   ++G     
Sbjct: 63   IGMTVTI----------QGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---PE 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   +  LI ++ G+ G I+R     + + A +      ++FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                    +++   +    +P+VAT N  ++  +D +A +VL A+  +  V     P   
Sbjct: 169  NP---RLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P+++           ++    A   T E+A RC   + +   +LPRF      +  +   
Sbjct: 226  PNYFTSQEEMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPL----NEGQNAS 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR  A AGL+ R   GA        +Y++RL++EL VI  M F+ YFLIV D I++++
Sbjct: 282  DVLRQTAFAGLKERNLLGA--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RRD
Sbjct: 334  EAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     + 
Sbjct: 394  EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V +   
Sbjct: 453  QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
               D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D +
Sbjct: 513  S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLEDKK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK+G
Sbjct: 572  TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++
Sbjct: 632  KEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F
Sbjct: 692  ERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVG 846
            +++ ++    N +KI ++  +A+ + I ++ PS+N     F+V +   I YS   I+ V 
Sbjct: 752  MSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVP 811

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
            T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D
Sbjct: 812  TKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965
             + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y S 
Sbjct: 872  AVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ +K
Sbjct: 930  HPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986

Query: 1026 EYEANFFP 1033
            E  A  FP
Sbjct: 987  ELSAVMFP 994


>gi|254992099|ref|ZP_05274289.1| DNA polymerase III (alpha subunit) DnaE [Listeria monocytogenes FSL
            J2-064]
          Length = 1108

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1028 (35%), Positives = 576/1028 (56%), Gaps = 41/1028 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + I          QG         ++L+  +  GY  L+++ S +   ++G     
Sbjct: 63   IGMTVTI----------QGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---PE 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   +  LI ++ G+ G I+R     + + A +      ++FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                    +++   +    +P+VAT N  ++  +D +A +VL A+  +  V     P   
Sbjct: 169  NP---RLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P+++           ++    A   T E+A RC   + +   +LPRF      +  +   
Sbjct: 226  PNYFTSQEEMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPL----NEGQNAS 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I++++
Sbjct: 282  DVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RRD
Sbjct: 334  EAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     + 
Sbjct: 394  EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V +   
Sbjct: 453  QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
               D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D +
Sbjct: 513  S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLEDKK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK+G
Sbjct: 572  TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++
Sbjct: 632  KEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F
Sbjct: 692  ERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVG 846
            +++ ++    N +KI ++  +A+ + I ++ PS+N     F+V +   I YS   I+ V 
Sbjct: 752  MSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVP 811

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
            T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D
Sbjct: 812  TKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965
             + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y S 
Sbjct: 872  AVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ +K
Sbjct: 930  HPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986

Query: 1026 EYEANFFP 1033
            E  A  FP
Sbjct: 987  ELSAVMFP 994


>gi|326559241|gb|EGE09672.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis 46P47B1]
          Length = 1240

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/1087 (35%), Positives = 583/1087 (53%), Gaps = 86/1087 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    AGI+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124
            IIG ++ +         +  K       S++L   +  GYQ L+ L+S  Y         
Sbjct: 62   IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 125  --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT      I +    ++   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILTH--RSEIAQPLLSHNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED-------------YEAHD 229
            Y+ ++R +  D       +  A    + ++A N+  F+                 ++AH+
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232

Query: 230  VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              + +A+S  ++   RPR  T   Y K++ +M  +F+DLP+A+ENT  +A RC+  + + 
Sbjct: 233  ARVCIANSYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIENTRLLASRCNVTITLG 292

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRLD 342
              +LP F   + + I    E   +  +  GL  RL       Q         + Y +RLD
Sbjct: 293  INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L
Sbjct: 349  YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +RDV 
Sbjct: 409  LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQK 517
            R    P+   DR+ K+IP  P   +   A   + + +E      + D      + E+++K
Sbjct: 469  RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKELLTNPDAPDHELALEIWEMAKK 527

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDFLGL+
Sbjct: 528  LEGLTRNVGKHAGGVLIAPNHISDFSAIYCDG-EGHPVSQYDKDDVEAVGLVKFDFLGLR 586

Query: 578  TLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQA 631
             LT+LQ ++D + Q          DL  +P DD + Y  +L    T  +FQLESSGM++ 
Sbjct: 587  NLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKKY 646

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKE 684
            L  ++P  IED+IA+ +LYRPGP+++ +   + +RK+G +++   HP      + P L+ 
Sbjct: 647  LAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLES 706

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  I   
Sbjct: 707  TYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNIDGG 766

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++  
Sbjct: 767  LAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVVF 826

Query: 805  FCQDARQF-NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPF 862
               D R    + I+PPSVN     F V D   I Y L A+KGVG      I+ A  D  F
Sbjct: 827  LLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGAF 886

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSLD 906
              L DFC+RVD KK+ +R LE+L+ AG  D    +                R  L + L 
Sbjct: 887  KDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQLP 946

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                 A    +N+     ++F     +      LE         R   EQ  LG Y +GH
Sbjct: 947  EAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTGH 1005

Query: 967  PLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            PLD Y+  L     +K   +   T +G    +A ++          G RI  V   +   
Sbjct: 1006 PLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDVAFF----GERIV-VKLDDGKG 1059

Query: 1026 EYEANFF 1032
              E + +
Sbjct: 1060 RIEMSCY 1066


>gi|254852197|ref|ZP_05241545.1| DNA polymerase III [Listeria monocytogenes FSL R2-503]
 gi|258605503|gb|EEW18111.1| DNA polymerase III [Listeria monocytogenes FSL R2-503]
          Length = 1108

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/1028 (35%), Positives = 577/1028 (56%), Gaps = 41/1028 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + I          QG         ++L+  +  GY  L+++ S +   ++G     
Sbjct: 63   IGMTVTI----------QGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---PE 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   +  LI ++ G+ G I+R     + + A +      ++FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                    +++   +    +P+VAT N  ++  +D +A +VL A+  +  V     P   
Sbjct: 169  NP---RLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P+++           ++    A   T E+A RC   + +   +LPRF      +  +   
Sbjct: 226  PNYFTSQEDMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPL----NEGQNAS 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I++++
Sbjct: 282  DVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ +YAL+ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RRD
Sbjct: 334  EAGILTGPGRGSAAGSLVSYALSITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     + 
Sbjct: 394  EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V +   
Sbjct: 453  QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
               D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D +
Sbjct: 513  S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLEDKK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK+G
Sbjct: 572  TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++
Sbjct: 632  KEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F
Sbjct: 692  ERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVG 846
            +++ ++    N +KI ++  +A+ + I ++ PS+N     F+V +   I YS   I+ V 
Sbjct: 752  MSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVP 811

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
            T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D
Sbjct: 812  TKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965
             + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y S 
Sbjct: 872  AVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ +K
Sbjct: 930  HPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986

Query: 1026 EYEANFFP 1033
            E  A  FP
Sbjct: 987  ELSAVMFP 994


>gi|254931514|ref|ZP_05264873.1| DNA polymerase III [Listeria monocytogenes HPB2262]
 gi|293583067|gb|EFF95099.1| DNA polymerase III [Listeria monocytogenes HPB2262]
 gi|328474924|gb|EGF45724.1| DNA polymerase III, alpha subunit [Listeria monocytogenes 220]
          Length = 1108

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1028 (35%), Positives = 576/1028 (56%), Gaps = 41/1028 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + I          QG         ++L+  +  GY  L+++ S +   ++G     
Sbjct: 63   IGMTVTI----------QGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---PE 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   +  LI ++ G+ G I+R     + + A +      ++FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                    +++   +    +P+VAT N  ++  +D +A +VL A+  +  V     P   
Sbjct: 169  NP---RLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P+++           ++    A   T E+A RC   + +   +LPRF      +  +   
Sbjct: 226  PNYFTSQEEMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPL----NEGQNAS 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I++++
Sbjct: 282  DVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AG++ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RRD
Sbjct: 334  EAGILTGPGRGSAAGALVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     + 
Sbjct: 394  EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V +   
Sbjct: 453  QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
               D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D +
Sbjct: 513  S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLEDKK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK+G
Sbjct: 572  TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++
Sbjct: 632  KEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F
Sbjct: 692  ERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVG 846
            +++ ++    N +KI ++  +A+ + I ++ PS+N     F+V +   I YS   I+ V 
Sbjct: 752  MSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVP 811

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
            T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D
Sbjct: 812  TKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965
             + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y S 
Sbjct: 872  AVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ +K
Sbjct: 930  HPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986

Query: 1026 EYEANFFP 1033
            E  A  FP
Sbjct: 987  ELSAVMFP 994


>gi|326576416|gb|EGE26325.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis O35E]
          Length = 1240

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/1087 (35%), Positives = 583/1087 (53%), Gaps = 86/1087 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    AGI+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124
            IIG ++ +         +  K       S++L   +  GYQ L+ L+S  Y         
Sbjct: 62   IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 125  --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT      I +    ++   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILTH--RSEIAQPLLSHNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED-------------YEAHD 229
            Y+ ++R +  D       +  A    + ++A N+  F+                 ++AH+
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232

Query: 230  VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              + +A+S  ++   RPR  T   Y K++ +M  +F+DLP+A++NT  +A RC+  + + 
Sbjct: 233  ARVCIANSYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIKNTRLLASRCNVTITLG 292

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRLD 342
              +LP F   + + I    E   +  +  GL  RL       Q         + Y +RLD
Sbjct: 293  INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L
Sbjct: 349  YELDIILKMGFPGYFLIVTDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +RDV 
Sbjct: 409  LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQK 517
            R    P+   DR+ K+IP  P   +   A   + + +E      + D      + E+++K
Sbjct: 469  RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKELLTNPDAPDHELALEIWEMAKK 527

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDFLGL+
Sbjct: 528  LEGLTRNVGKHAGGVLIAPNRISDFSAIYCDG-EGHPVSQYDKDDVEAVGLVKFDFLGLR 586

Query: 578  TLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQA 631
             LT+LQ ++D + Q          DL  +P DD + Y  +L    T  +FQLESSGM++ 
Sbjct: 587  NLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKKY 646

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKE 684
            L  ++P  IED+IA+ +LYRPGP+++ +   + +RK+G +++   HP      + P L+ 
Sbjct: 647  LAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLES 706

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  I   
Sbjct: 707  TYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVEGAIEQNIDGG 766

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++  
Sbjct: 767  LAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVVF 826

Query: 805  FCQDARQF-NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPF 862
               D R    + I+PPSVN     F V D   I Y L A+KGVG      I+ A  D  F
Sbjct: 827  LLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGAF 886

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSLD 906
              L DFC+RVD KK+ +R LE+L+ AG  D    +                R  L + L 
Sbjct: 887  KDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQLP 946

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                 A    +N+     ++F     +      LE         R   EQ  LG Y +GH
Sbjct: 947  EAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTGH 1005

Query: 967  PLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            PLD Y+  L     +K   +   T +G    +A ++          G RI  V   +   
Sbjct: 1006 PLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDVAFF----GERIV-VKLDDGKG 1059

Query: 1026 EYEANFF 1032
              E + +
Sbjct: 1060 RIEMSCY 1066


>gi|161869391|ref|YP_001598558.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 053442]
 gi|161594944|gb|ABX72604.1| DNA polymerase III, alpha subunit [Neisseria meningitidis 053442]
          Length = 1109

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/1002 (38%), Positives = 564/1002 (56%), Gaps = 34/1002 (3%)

Query: 41   QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
             PA+ I+D  N F  ++F +   +AGI+PI    + I                      +
Sbjct: 1    MPALGISDLMNEFGLVKFYKACRSAGIKPIGAADVWI----------GNPNAPDKPFRAM 50

Query: 101  LLVSTAEGYQRLIELVSRMYL-LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            L++    GY RL EL++  Y+  D+      +   WL+     GLI L+G   G +    
Sbjct: 51   LIIRNDAGYLRLSELLTEAYVGKDRNIHHAELNPEWLENGDNSGLICLSGAHYGEVGVNL 110

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNS 217
               +   A    L +   F D  Y+ LQR   R       S  V+LA    LP+VAT+ +
Sbjct: 111  LNGNEDAARAAALKYAAWFPDAFYMELQRLPERPEWEACVSGSVKLAEELGLPVVATHPT 170

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVE 276
             F+S +D+ AH+  + +A   V++ K RPR  TPD +      M+  F+DLPEALENTVE
Sbjct: 171  QFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPDQFFIPPETMLERFADLPEALENTVE 230

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA-- 334
            IA+RC+  + +    LP F   +        ++ L   +  GL+ R+ Q    +   A  
Sbjct: 231  IAKRCNLHITLGKNFLPLFPTPDG----LSRDDYLIKLSNKGLQERMVQLYPDEAERAAK 286

Query: 335  -QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
              +Y++RLDFELN+I +MKF GYFLIV DFI WAK +  PVGPGRGSGAGS+ AY+L IT
Sbjct: 287  MPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKIT 346

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            D+DPL+++LLFERFLNP+R+SMPDFD+DFCQ  R  VI YV+ KYG + V+QI+TFG++ 
Sbjct: 347  DLDPLKYALLFERFLNPERVSMPDFDVDFCQSNRGRVIEYVREKYGAKAVSQIVTFGTMS 406

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLL 512
            +KA +RDVGR L++P+   D+L KLIP +   P+    A+  + + +E   A    D L+
Sbjct: 407  SKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELI 465

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             +++KLE L R    HA G++I    +S   P+Y+   S  PV+ ++   +E  GL+KFD
Sbjct: 466  TLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFD 525

Query: 573  FLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            FLGL+ LT+++ + + +       +D+  IP DD   Y +     T  +FQ ES+GM++ 
Sbjct: 526  FLGLRNLTIIEMAQNNIKNTTGDIIDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKM 585

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            L+       E++IA VSLYRPGP+DNI  +  R  G+ +   IHPL++ +L  T G+++Y
Sbjct: 586  LKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVY 644

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVMQ AQ++ GYSL  AD+LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF 
Sbjct: 645  QEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFN 704

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             + KFA YGFNKSHAAAYA+ISYQTAW+K HYP EF+AA+M+ E+DN +++K F  D R 
Sbjct: 705  YMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRA 764

Query: 812  FNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFC 869
              I+ +PP +N     F    D +I Y+L AIKG G      I  A      F  L DFC
Sbjct: 765  NGIEFLPPDINESDYRFTPYPDMKIRYALGAIKGTGEAAVESITSARQSGGKFTGLLDFC 824

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             RV  + +NRR LE+L+  GA D    +R  LL ++D     A   +K        +F  
Sbjct: 825  ERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLANIDLAMNNAD--QKAANTNQGGLFDM 882

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
             +      + L    + + S +   E+ V+GFY SGHP   Y   +R++  +   +    
Sbjct: 883  MEDAIEP-VRLVDAPMWSESEKLAEEKTVIGFYLSGHPFGPYAQEVRQIAPQKLSKLKPQ 941

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
               +++RLA  V + +    ++G  I +V+  + + + E   
Sbjct: 942  ---DSVRLAGFVTAVRTMMGKRGK-IAFVSLEDLSGQVEIMV 979


>gi|254828191|ref|ZP_05232878.1| DNA polymerase III [Listeria monocytogenes FSL N3-165]
 gi|258600578|gb|EEW13903.1| DNA polymerase III [Listeria monocytogenes FSL N3-165]
          Length = 1108

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1028 (35%), Positives = 578/1028 (56%), Gaps = 41/1028 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + I          QG         ++L+  +  GY +L+++ S +   ++G     
Sbjct: 63   IGMTVTI----------QGYLNPINSYELILIAESTAGYHQLLKIASAIQTREEG---PE 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   ++ LI+++ G+ G I+R       + A +      ++FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSSD-LIVISPGAKGEIERLLMEEDREGALEVYANLVEIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                    +++   +    +P+VAT N  +L  +D +A +VL A+  +  V     P   
Sbjct: 169  NP---RLFAKIETFSSEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P+++            +   +A   T E+A RC   + +   +LPRF      +  +   
Sbjct: 226  PNYFTSQDEMERDWQTAFEKQACLETGELANRCHVEIALDQHLLPRFPL----NEGQNAS 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I++++
Sbjct: 282  DVLRQTAFAGLKERNLLGM--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  +  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RRD
Sbjct: 334  EAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     + 
Sbjct: 394  EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V +   
Sbjct: 453  QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
               D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D +
Sbjct: 513  S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLEDKK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK+G
Sbjct: 572  TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KEKI   HP +  +L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++
Sbjct: 632  KEKIQYPHPDLASILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ GA   G S+  A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F
Sbjct: 692  ERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVG 846
            +++ ++    N +KI ++  +A+ + I ++ PS+N     F++ +   I YS   I+ V 
Sbjct: 752  MSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQMENETAIRYSFRVIRKVP 811

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
            T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D
Sbjct: 812  TKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965
             + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y S 
Sbjct: 872  AVLQYISLLGED--SKGMNLFAEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ +K
Sbjct: 930  HPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986

Query: 1026 EYEANFFP 1033
            E  A  FP
Sbjct: 987  ELSAVMFP 994


>gi|296132555|ref|YP_003639802.1| DNA polymerase III, alpha subunit [Thermincola sp. JR]
 gi|296031133|gb|ADG81901.1| DNA polymerase III, alpha subunit [Thermincola potens JR]
          Length = 1028

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/1029 (30%), Positives = 511/1029 (49%), Gaps = 50/1029 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL VH+ +S L+GA  + +++ K      PAIA+TD NNL  A++F Q A AAGI+P
Sbjct: 2    SFVHLHVHTPFSFLDGAGKIEDLIAKAVEMGCPAIAMTDHNNLCGAVKFHQLATAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ +                     + LL     GY  L  +++  +L    +   
Sbjct: 62   IIGTEITMQDGH----------------HLTLLARNPLGYANLCRILTDGHLNS-PRGYP 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ- 187
             + LS L +     +I+L+G   G I         + A      +  LFG    ++ LQ 
Sbjct: 105  TVKLSTLAK-HCRDIIILSGCRMGKIPSLILRGRFREALNTAAEYLHLFGRSNFFLELQP 163

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                  +   + + QLA   ++ +VATNN  + ++E +  HD+L  V   T +      R
Sbjct: 164  PLLPGSQALNNYLAQLAEQLKMDIVATNNVHYCTKEGFPVHDLLTCVRTLTKLEDVHPER 223

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                ++ LK+ +EM ++F   P A+ NT+ IA RC+  L+    I P F     +     
Sbjct: 224  RLNAENDLKSPAEMANLFYQYPRAVHNTLMIADRCAPALKPPEKIFPSFPVPSGEP---- 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     G            G   +   +RL+ EL++I R+ +  YFL+V D + +
Sbjct: 280  AAAYLRRLTYEGARK-------RYGRLTRAITERLEHELDIICRLGYEDYFLLVWDLVDY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AKK  I    GRGS A S  AY L IT++D +   LLFERF++ +R   PD DIDF    
Sbjct: 333  AKKQKIRYA-GRGSAADSAVAYCLFITEVDSINRGLLFERFMSLERAQKPDIDIDFDSRY 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD V  Y+  KYG  RVA + T+ + +A++A RD+G+A+  P  ++D + K +P   A  
Sbjct: 392  RDRVADYLYKKYGSNRVAGVCTYNTFRARSAFRDLGKAMDFPAEEIDLIAKRLPFIRADQ 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A+      RE  L      +L      + G  R  STH  GIV+   PL  L P+ 
Sbjct: 452  ID-LALEKFPELREGGLPLEKYRQLFGYCTAVSGFPRFISTHLGGIVVSRDPLVNLTPLQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            +     + V+QF+ ++IE  GL+K D L L+T+++++ +   +     + D   IP +D 
Sbjct: 511  KAA-KGIVVSQFDKEYIEDLGLVKLDLLSLRTMSVVENATLTIRAENPEFDYETIPLNDK 569

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664
             TY LL T  T+G+FQLES   R     +Q  C+EDI+A V+L RPGPI   +   +  R
Sbjct: 570  ATYELLNTGQTIGVFQLESPAQRALQSRLQASCLEDIVASVALIRPGPIKGNMVEPFIAR 629

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKE 723
            ++GKE +  +HP + P+L++T GV+++QEQV++IA +++G++  EAD LRR M   +  E
Sbjct: 630  RHGKEPVSYLHPKLKPILEKTYGVVLFQEQVIEIATVIAGFTPGEADRLRRVMTHARSHE 689

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +M      F++ A  NGISK IA  IF  +  +A YGF ++HAAA+A  +Y+TA++  HY
Sbjct: 690  DMLGIGREFVAKAIANGISKEIAETIFGYIVGYASYGFCEAHAAAFATTAYKTAYLVKHY 749

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P E+ AA ++ +          C +AR+  I I+PP +N    DF V    I  SL+ +K
Sbjct: 750  PAEYYAAILSHQPMGFYGSNTICVEARRRGINILPPDINLSQRDFTVEKGNIRISLSQVK 809

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            G+  +   +I+      PF  ++DF +RV   K++R +L  L+  GA D    +R QLL 
Sbjct: 810  GMKASVLDNILAERNIAPFSGIDDFLNRV---KIDRALLTHLILCGAFDSLHSNRKQLLW 866

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             ++  + +   ++K              G+    +   + +  +   +F  E ++LG   
Sbjct: 867  WVNQQRTF--KLQKEERVCQN-------GSLPVNLPWPEIADYSEVEKFNWEYKILGIDV 917

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
              H +  ++  L K G     +  +   G  ++ A + +   +  TR G    +++  + 
Sbjct: 918  RRHYMSYWRAYLDKHGFTNSLKIKSLPHGAKVKAAGLPIRPHRPPTRSGKVAVFLSLEDE 977

Query: 1024 AKEYEANFF 1032
                +   F
Sbjct: 978  FGLVDVTLF 986


>gi|300766000|ref|ZP_07075971.1| DNA polymerase III, alpha subunit [Listeria monocytogenes FSL N1-017]
 gi|300513318|gb|EFK40394.1| DNA polymerase III, alpha subunit [Listeria monocytogenes FSL N1-017]
          Length = 1108

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1028 (35%), Positives = 576/1028 (56%), Gaps = 41/1028 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + I          QG         ++L+  +  GY  L+++ S +   ++G     
Sbjct: 63   IGMTVTI----------QGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---PE 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   +  LI ++ G+ G I+R     + + A +      ++FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                    +++   +    +P+VAT N  ++  +D +A +VL A+  +  V     P   
Sbjct: 169  NP---RLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P+++           ++    A   T E+A RC   + +   +LPRF      +  +   
Sbjct: 226  PNYFTSQEDMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPL----NEGQNAS 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I++++
Sbjct: 282  DVLRQTAFAGLKERNLLGV--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ +YAL+ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RRD
Sbjct: 334  EAGILTGPGRGSAAGSLVSYALSITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV +KYG   VAQI  FG+L AKAA+RD  R+  +    +    KLIP+     + 
Sbjct: 394  EVISYVVSKYGEAHVAQIGMFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V +   
Sbjct: 453  QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
               D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D +
Sbjct: 513  S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLEDKK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK+G
Sbjct: 572  TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++
Sbjct: 632  KEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ GA   G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F
Sbjct: 692  ERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVG 846
            +++ ++    N +KI ++  +A+ + I ++ PS+N     F+V +   I YS   I+ V 
Sbjct: 752  MSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVP 811

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
            T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D
Sbjct: 812  TKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965
             + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y S 
Sbjct: 872  AVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ +K
Sbjct: 930  HPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986

Query: 1026 EYEANFFP 1033
            E  A  FP
Sbjct: 987  ELSAVMFP 994


>gi|16803614|ref|NP_465099.1| hypothetical protein lmo1574 [Listeria monocytogenes EGD-e]
 gi|224501486|ref|ZP_03669793.1| hypothetical protein LmonFR_03047 [Listeria monocytogenes FSL R2-561]
 gi|254831975|ref|ZP_05236630.1| hypothetical protein Lmon1_11500 [Listeria monocytogenes 10403S]
 gi|284801965|ref|YP_003413830.1| hypothetical protein LM5578_1720 [Listeria monocytogenes 08-5578]
 gi|284995107|ref|YP_003416875.1| hypothetical protein LM5923_1672 [Listeria monocytogenes 08-5923]
 gi|16411003|emb|CAC99652.1| dnaE [Listeria monocytogenes EGD-e]
 gi|284057527|gb|ADB68468.1| hypothetical protein LM5578_1720 [Listeria monocytogenes 08-5578]
 gi|284060574|gb|ADB71513.1| hypothetical protein LM5923_1672 [Listeria monocytogenes 08-5923]
          Length = 1108

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1028 (35%), Positives = 578/1028 (56%), Gaps = 41/1028 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + I          QG         ++L+  +  GY +L+++ S +   ++G     
Sbjct: 63   IGMTVTI----------QGYLNPINSYELILIAESTAGYHQLLKIASAIQTREEG---PE 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   ++ LI+++ G+ G I+R       + A +      ++FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSSD-LIVISPGAKGEIERLLMEEDREGALEVYANLVEIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                    +++   +    +P+VAT N  +L  +D +A +VL A+  +  V     P   
Sbjct: 169  NP---RLFAKIETFSSEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P+++            +   +A   T E+A RC   + +   +LPRF      +  +   
Sbjct: 226  PNYFTSQDEMERDWQTAFEKQACLETGELANRCHVEIALDQHLLPRFPL----NEGQNAS 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I++++
Sbjct: 282  DVLRQTAFAGLKERNLLGM--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  +  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RRD
Sbjct: 334  EAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     + 
Sbjct: 394  EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V +   
Sbjct: 453  QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
               D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D +
Sbjct: 513  S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLEDKK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK+G
Sbjct: 572  TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KEKI   HP +  +L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++
Sbjct: 632  KEKIQYPHPDLASILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ GA   G S+  A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F
Sbjct: 692  ERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVG 846
            +++ ++    N +KI ++  +A+ + I ++ PS+N     F++ +   I YS   I+ V 
Sbjct: 752  MSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVP 811

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
            T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D
Sbjct: 812  TKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965
             + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y S 
Sbjct: 872  AVLQYISLLGED--SKGMNLFAEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ +K
Sbjct: 930  HPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986

Query: 1026 EYEANFFP 1033
            E  A  FP
Sbjct: 987  ELSAVMFP 994


>gi|47096787|ref|ZP_00234369.1| DNA polymerase III, alpha subunit [Listeria monocytogenes str. 1/2a
            F6854]
 gi|254898259|ref|ZP_05258183.1| hypothetical protein LmonJ_00550 [Listeria monocytogenes J0161]
 gi|254912248|ref|ZP_05262260.1| DNA polymerase III [Listeria monocytogenes J2818]
 gi|254936575|ref|ZP_05268272.1| DNA polymerase III [Listeria monocytogenes F6900]
 gi|47014820|gb|EAL05771.1| DNA polymerase III, alpha subunit [Listeria monocytogenes str. 1/2a
            F6854]
 gi|258609171|gb|EEW21779.1| DNA polymerase III [Listeria monocytogenes F6900]
 gi|293590225|gb|EFF98559.1| DNA polymerase III [Listeria monocytogenes J2818]
          Length = 1108

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1028 (35%), Positives = 578/1028 (56%), Gaps = 41/1028 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + I          QG         ++L+  +  GY +L+++ S +   ++G     
Sbjct: 63   IGMTVTI----------QGYLNPINSYELILIAESTAGYHQLLKIASAIQTREEG---PE 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   ++ LI+++ G+ G I+R       + A +      ++FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSSD-LIVISPGAKGEIERLLMEEDREGALEVYANLVEIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                    +++   +    +P+VAT N  +L  +D +A +VL A+  +  V     P   
Sbjct: 169  NP---RLFAKIETFSSEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P+++            +   +A   T E+A RC   + +   +LPRF      +  +   
Sbjct: 226  PNYFTSQDEMERDWQTAFEKQACLETGELANRCHVEIALDQHLLPRFPL----NEGQNAS 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I++++
Sbjct: 282  DVLRQTAFAGLKERNLLGM--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  +  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RRD
Sbjct: 334  EAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     + 
Sbjct: 394  EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V +   
Sbjct: 453  QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
               D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D +
Sbjct: 513  S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLEDKK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK+G
Sbjct: 572  TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KEKI   HP +  +L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++
Sbjct: 632  KEKIQYPHPDLASILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ GA   G S+  A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F
Sbjct: 692  ERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVG 846
            +++ ++    N +KI ++  +A+ + I ++ PS+N     F++ +   I YS   I+ V 
Sbjct: 752  MSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVP 811

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
            T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D
Sbjct: 812  TKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965
             + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y S 
Sbjct: 872  AVLQYISLLGED--SKGMNLFAEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ +K
Sbjct: 930  HPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986

Query: 1026 EYEANFFP 1033
            E  A  FP
Sbjct: 987  ELSAVMFP 994


>gi|224499768|ref|ZP_03668117.1| hypothetical protein LmonF1_08799 [Listeria monocytogenes Finland
            1988]
          Length = 1108

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/1028 (35%), Positives = 578/1028 (56%), Gaps = 41/1028 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + I          QG         ++L+  +  GY +L+++ S +   ++G     
Sbjct: 63   IGMTVTI----------QGYLNPINSYELILIAESTAGYHQLLKIASAIQTREEG---PE 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            +  SWL+   ++ LI+++ G+ G I+R       + A +      ++FG + +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSSD-LIVISPGAKGEIERLLMEEDREGALEVYANLVEIFGKESVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                    +++   +    +P+VAT N  +L  +D +A +VL A+  +  V     P   
Sbjct: 169  NP---RLFAKIETFSSEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIF-SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P+++            +   +A   T E+A RC   + +   +LPRF      +  +   
Sbjct: 226  PNYFTSQDEMERDWQTAFEKQACLETGELANRCHVEIALDQHLLPRFPL----NEGQNAS 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR  A AGL+ R   G         +Y++RL++EL VI  M F+ YFLIV D I++++
Sbjct: 282  DVLRQTAFAGLKERNLLGM--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  +  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RRD
Sbjct: 334  EAGVLTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     + 
Sbjct: 394  EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V +   
Sbjct: 453  QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
               D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D +
Sbjct: 513  S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLEDKK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK+G
Sbjct: 572  TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KEKI   HP +  +L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++
Sbjct: 632  KEKIQYPHPDLASILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ GA   G S+  A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F
Sbjct: 692  ERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVG 846
            +++ ++    N +KI ++  +A+ + I ++ PS+N     F++ +   I YS   I+ V 
Sbjct: 752  MSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVP 811

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
            T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D
Sbjct: 812  TKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965
             + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y S 
Sbjct: 872  AVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ +K
Sbjct: 930  HPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986

Query: 1026 EYEANFFP 1033
            E  A  FP
Sbjct: 987  ELSAVMFP 994


>gi|326576004|gb|EGE25927.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis CO72]
          Length = 1240

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/1087 (35%), Positives = 581/1087 (53%), Gaps = 86/1087 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    A I+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIDASIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124
            IIG ++ +         +  K       S++L   +  GYQ L+ L+S  Y         
Sbjct: 62   IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 125  --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT      I +    ++   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILTH--RSEIAQPLLSHNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED-------------YEAHD 229
            Y+ ++R +  D       +  A    + ++A N+  F+                 ++AH+
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232

Query: 230  VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              + +A+   ++   RPR  T   Y K++ +M  +F+DLP+A+ENT  +A RC+  + + 
Sbjct: 233  ARVCIANGYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIENTRLLASRCNVTITLG 292

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRLD 342
              +LP F   + + I    E   +  +  GL  RL       Q         + Y +RLD
Sbjct: 293  INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L
Sbjct: 349  YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +RDV 
Sbjct: 409  LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQK 517
            R    P+   DR+ K+IP  P   +   A   + + +E      + D      + E+++K
Sbjct: 469  RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKELLTNPDAPDHELALEIWEMAKK 527

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDFLGL+
Sbjct: 528  LEGLTRNVGKHAGGVLIAPNRISDFSAIYCDG-EGHPVSQYDKDDVEAVGLVKFDFLGLR 586

Query: 578  TLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQA 631
             LT+LQ ++D + Q          DL  +P DD + Y  +L    T  +FQLESSGM++ 
Sbjct: 587  NLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKKY 646

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKE 684
            L  ++P  IED+IA+ +LYRPGP+++ +   + +RK+G +++   HP      + P L+ 
Sbjct: 647  LAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLES 706

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  I   
Sbjct: 707  TYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNIDGG 766

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++  
Sbjct: 767  LAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVVF 826

Query: 805  FCQDARQF-NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPF 862
               D R    + I+PPSVN     F V D   I Y L A+KGVG      I+ A  D  F
Sbjct: 827  LLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGAF 886

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSLD 906
              L DFC+RVD KK+ +R LE+L+ AG  D    +                R  L + L 
Sbjct: 887  KDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQLP 946

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                 A    +N+     ++F     +      LE         R   EQ  LG Y +GH
Sbjct: 947  EAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTGH 1005

Query: 967  PLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            PLD Y+  L     +K   +   T +G    +A ++          G RI  V   +   
Sbjct: 1006 PLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDVAFF----GERIV-VKLDDGKG 1059

Query: 1026 EYEANFF 1032
              E + +
Sbjct: 1060 RIEMSCY 1066


>gi|326563512|gb|EGE13771.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis 12P80B1]
          Length = 1240

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/1087 (35%), Positives = 580/1087 (53%), Gaps = 86/1087 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +    A I+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIDASIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124
            IIG ++ +         +  K       S++L   +  GYQ L+ L+S  Y         
Sbjct: 62   IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 125  --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT      I +    ++   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILTH--RSEIAQPLLSHNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED-------------YEAHD 229
            Y+ ++R +  D       +  A    + ++A N+  F+                 ++AH+
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232

Query: 230  VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              + +A+   ++   RPR  T   Y K++ +M  +F+DLP+A+ENT  +A RC+  + + 
Sbjct: 233  ARVCIANGYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIENTRLLASRCNVTITLG 292

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEV------RLAQGAIAKGYHAQDYRQRLD 342
              +LP F   + + I    E   +  +  GL         + +         + Y +RLD
Sbjct: 293  INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVEERGDDWDQVRKPYDERLD 348

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L
Sbjct: 349  YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +RDV 
Sbjct: 409  LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQK 517
            R    P+   DR+ K+IP  P   +   A   + + +E      + D      + E+++K
Sbjct: 469  RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKELLTNPDAPDHELALEIWEMAKK 527

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDFLGL+
Sbjct: 528  LEGLTRNVGKHAGGVLIAPNRISDFSAIYCDG-EGHPVSQYDKDDVEAVGLVKFDFLGLR 586

Query: 578  TLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQA 631
             LT+LQ ++D + Q          DL  +P DD + Y  +L    T  +FQLESSGM++ 
Sbjct: 587  NLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKKY 646

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKE 684
            L  ++P  IED+IA+ +LYRPGP+++ +   + +RK+G +++   HP      + P L+ 
Sbjct: 647  LAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLES 706

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  I   
Sbjct: 707  TYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNIDGG 766

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++  
Sbjct: 767  LAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVVF 826

Query: 805  FCQDARQF-NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPF 862
               D R    + I+PPSVN     F V D   I Y L A+KGVG      I+ A  D  F
Sbjct: 827  LLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGAF 886

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSLD 906
              L DFC+RVD KK+ +R LE+L+ AG  D    +                R  L + L 
Sbjct: 887  KDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQLP 946

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                 A    +N+     ++F     +      LE         R   EQ  LG Y +GH
Sbjct: 947  EAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTGH 1005

Query: 967  PLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            PLD Y+  L     +K   +   T +G    +A ++          G RI  V   +   
Sbjct: 1006 PLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDVAFF----GERIV-VKLDDGKG 1059

Query: 1026 EYEANFF 1032
              E + +
Sbjct: 1060 RIEMSCY 1066


>gi|116873003|ref|YP_849784.1| DNA polymerase III, alpha subunit [Listeria welshimeri serovar 6b
            str. SLCC5334]
 gi|116741881|emb|CAK21005.1| DNA polymerase III, alpha subunit [Listeria welshimeri serovar 6b
            str. SLCC5334]
          Length = 1108

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/1028 (35%), Positives = 574/1028 (55%), Gaps = 41/1028 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + I          QG         ++L+  +  GY +L+++ S +   ++G     
Sbjct: 63   IGMTVTI----------QGYFNPINSYELILIAESTAGYHQLLKIASAIQTREEG---PE 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRH 189
            +  SWL+   ++ LI ++ G+ G I+R     +   A +       +FG+  +Y++ Q+ 
Sbjct: 110  LPQSWLRAYSSD-LIAISPGAKGEIERLLMEENRDGALEAYENLVAIFGNSSVYLSAQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                    +++   +   E+P+VAT +  +L  +D +A +VL A+  +  V     P   
Sbjct: 169  NP---RLFAKIEVFSAEEEVPVVATKDVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P+++           +D   +A   T ++A RC   + +   +LPRF      D ++   
Sbjct: 226  PNYFSSQDEMERDWQTDFEKQACLETGKLAERCHVEIALDQHLLPRFPL----DEKQNAS 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR  A AGL+ R            ++Y+ RLD+EL VI  M F+ YFLIV D I++++
Sbjct: 282  DVLRQTAYAGLKER--------DLLTREYQNRLDYELKVITEMGFADYFLIVWDVIRYSR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RRD
Sbjct: 334  EAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     + 
Sbjct: 394  EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGMTLP 453

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
               + +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V +   
Sbjct: 454  KA-LQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHE 607
               D  +TQF M  +EK GL+K DFLGL+ L+LL + L          + L+ I  +D +
Sbjct: 513  S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYASEKPLTLADISLEDKK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK+G
Sbjct: 572  TLTLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++
Sbjct: 632  KEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ GA   G S+  A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K HYP  F
Sbjct: 692  ERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHYPAAF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVG 846
            +++ ++    N +KI ++  +A+ + I ++ PS+N     F++ +   I YS   I+ V 
Sbjct: 752  MSSLLSSVFGNDDKISQYITEAKNYGINMLAPSINHSNYYFQMENETSIRYSFRVIRKVP 811

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                  I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D
Sbjct: 812  AKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATID 871

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965
             + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y S 
Sbjct: 872  AVLQYISLLGED--SKGMNLFAEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSA 929

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+  Y+  L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ +K
Sbjct: 930  HPVSYYQNKLQNLSITKLANITS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSK 986

Query: 1026 EYEANFFP 1033
            E  A  FP
Sbjct: 987  ELSAVMFP 994


>gi|326560771|gb|EGE11138.1| DNA polymerase III, alpha subunit [Moraxella catarrhalis 103P14B1]
          Length = 1240

 Score =  642 bits (1657), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/1087 (35%), Positives = 582/1087 (53%), Gaps = 86/1087 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHL + S Y++++  + + +++    AD Q  +A+ D NN+F+A++F +     GI+P
Sbjct: 2    SFVHLGIRSEYAIIDSIVRIKDLVKAAVADGQDTLALADWNNMFAAVKFYKACIGDGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124
            IIG ++ +         +  K       S++L   +  GYQ L+ L+S  Y         
Sbjct: 62   IIGAEVVV-------GEHSDKDAADARHSVILYAMSHHGYQNLMRLISDAYTNRPMNNHG 114

Query: 125  --GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                ++  I  + L E   E + +LT      I +    ++   A   L T++ +FGDRL
Sbjct: 115  SVEFETPVITKAALAEYSDELIAILTH--RSEIAQPLLSHNPDNALPILQTWQDIFGDRL 172

Query: 183  YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED-------------YEAHD 229
            Y+ ++R +  D       +  A    + ++A N+  F+                 ++AH+
Sbjct: 173  YIGIRRVKASDDKFNESAIIQAAKLGIAIIAHNDVRFIHASPTETNDKNNTVSTDFDAHE 232

Query: 230  VLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              + +A+S  ++   RPR  T   Y K++ +M  +F+DLP+A+ENT  +A RC+  + + 
Sbjct: 233  ARVCIANSYTLADDRRPREYTELQYFKSQKQMAELFADLPQAIENTRLLASRCNVTITLG 292

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA------QGAIAKGYHAQDYRQRLD 342
              +LP F   + + I    E   +  +  GL  RL       Q         + Y +RLD
Sbjct: 293  INVLPDFPIPKGETI----ETFFKKVSADGLNRRLEKLYPVDQRDDDWDKVRKPYDERLD 348

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +EL++I +M F GYFLIV DFI+WAK N +PVGPGRGSGAGS+ AY+L ITD+DPL + L
Sbjct: 349  YELDIILKMGFPGYFLIVMDFIRWAKANGVPVGPGRGSGAGSLVAYSLNITDLDPLSYDL 408

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LFERFLNP+R+SMPDFDIDFC + RD VI YV   YG + V+QIITFG++ A+A +RDV 
Sbjct: 409  LFERFLNPERVSMPDFDIDFCIEGRDRVIDYVAQTYGRQAVSQIITFGTMAARAVVRDVT 468

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR-----LLEISQK 517
            R    P+   DR+ K+IP  P   +   A   + + +E      + D      + E+++K
Sbjct: 469  RVQGKPFGLGDRISKMIPKTPGIKLE-DAFDQEPQLKELLTNPDAPDHELALEIWEMAKK 527

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL R+   HA G++I    +S    +Y D     PV+Q++   +E  GL+KFDFLGL+
Sbjct: 528  LEGLTRNVGKHAGGVLIAPNRISDFSAIYCDG-EGHPVSQYDKDDVEAVGLVKFDFLGLR 586

Query: 578  TLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQA 631
             LT+LQ ++D + Q          DL  +P DD + Y  +L    T  +FQLESSGM++ 
Sbjct: 587  NLTVLQAAVDNINQTRQAQGQSSIDLETLPLDDADVYTSVLQEAKTSAVFQLESSGMKKY 646

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL-----IDPMLKE 684
            L  ++P  IED+IA+ +LYRPGP+++ +   + +RK+G +++   HP      + P L+ 
Sbjct: 647  LAQLKPSNIEDVIAMCALYRPGPLESGMVSDFIDRKHGIQEVAYPHPQFQHELLQPPLES 706

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F+ GA +  I   
Sbjct: 707  TYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEMAKQRSTFVDGAIEQNIDGG 766

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +A  IF+L+ KFA YGFNKSH+AAY V++YQTA++K +YP EF+AA +T EMD+ +++  
Sbjct: 767  LAAQIFDLVEKFAGYGFNKSHSAAYGVLAYQTAYLKHYYPAEFMAAVLTSEMDDTDQVVF 826

Query: 805  FCQDARQF-NIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPF 862
               D R    + I+PPSVN     F V D   I Y L A+KGVG      I+ A  D  F
Sbjct: 827  LLSDCRDNFGLTIIPPSVNHSQWKFVVRDAKTIVYGLGAVKGVGEEAVNSIVAARKDGAF 886

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS----------------RMQLLQSLD 906
              L DFC+RVD KK+ +R LE+L+ AG  D    +                R  L + L 
Sbjct: 887  KDLYDFCNRVDIKKVGKRSLEALIKAGCFDILAETLKPHYITDHSDCSYQIRRGLWRQLP 946

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                 A    +N+     ++F     +      LE         R   EQ  LG Y +GH
Sbjct: 947  EAMAAADQNRQNQLIGTMDLFTDVDDSLFVAPPLEDV-YWQPQDRLRYEQATLGLYLTGH 1005

Query: 967  PLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            PLD Y+  L     +K   +   T +G    +A ++          G RI  V   +   
Sbjct: 1006 PLDEYRSELPLYTTVKSVVDLKDTAKG-FAWIAGLIYDVAFF----GERIV-VKLDDGKG 1059

Query: 1026 EYEANFF 1032
              E + +
Sbjct: 1060 RIEMSCY 1066


>gi|269120359|ref|YP_003308536.1| DNA polymerase III subunit alpha [Sebaldella termitidis ATCC 33386]
 gi|268614237|gb|ACZ08605.1| DNA polymerase III, alpha subunit [Sebaldella termitidis ATCC 33386]
          Length = 1122

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/1027 (34%), Positives = 572/1027 (55%), Gaps = 36/1027 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ YSLLEG   +   LD+        +A+TDT  +F  +EF +KA   GI+PI
Sbjct: 6    FVHLKLHTEYSLLEGVGKIEEYLDRAKKLDIKQLAVTDTA-MFGVVEFYEKAFKKGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG ++ +D                   S+ LL     GY+ L +L S  +      ++  
Sbjct: 65   IGLEIFMD-----------GFFSEGEYSLTLLARNQTGYKNLCKLSSLSFSRFNRSRNK- 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L++  +EGL +L+GG +  +  +         +  +    + FG+  YV +    
Sbjct: 113  IRYEELKK-HSEGLFILSGGINSELTESILTYKYSEFKNIITKLVQDFGEYFYVEVPAAE 171

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
               + +    +++A       VA N+  + +  D     +++++   T ++ ++      
Sbjct: 172  RL-KDKVKLYIEMAEECNAEYVAANDVYYPNFGDSILQKIMISIKDGTKINSENTELKYN 230

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            D YLK+  +M   FS   +A+EN+++IAR C+   +      P +   E     K E   
Sbjct: 231  DLYLKSAEQMKENFSGYEKAIENSLKIARECNVSFEFDKFKFPEYNLPEG----KSETEY 286

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            +R     GL+ +  +         +   +R ++EL++I +M ++GYF+IV DFI++AK N
Sbjct: 287  IRELVYDGLKKKYGEPL------EEKITERAEYELDIINKMGYNGYFIIVWDFIKYAKDN 340

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I VGPGRGS AGS+ +YAL IT++DP++++L+FERFLNP+R+SMPD DIDF Q++R++V
Sbjct: 341  GIYVGPGRGSSAGSIVSYALNITEVDPIKYNLIFERFLNPERISMPDIDIDFDQEQREQV 400

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I YV  KYGHE+VA IITFG+L+A+AA+RDVGR L +   +VD++ KLIP+         
Sbjct: 401  IDYVVKKYGHEKVAHIITFGTLKARAAIRDVGRVLDINLKKVDKVAKLIPHFS---ELED 457

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A+ +    +    +D  V  +++ S KLEG  RHAS HAAG+VI    L   +P Y D R
Sbjct: 458  AVKNVRELKTLYNSDSEVRDMIDYSLKLEGKVRHASVHAAGMVISKDVLDDEIPTYSDGR 517

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
            +    TQ+ MK +E  G++K DFLGLK LT+L+K+++ +       + L  IP DD ETY
Sbjct: 518  ASFLSTQYQMKELEDLGILKMDFLGLKNLTILRKTMENIKITQGKVMVLDDIPLDDKETY 577

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             +LT   TLG+FQ ES G+R+ ++ M+ +  EDI+AL++LYRPGP+ + +V +   +  E
Sbjct: 578  KMLTAGDTLGVFQCESIGIRRLMQKMKIEKFEDIVALLALYRPGPLRSGMVDDFIASKNE 637

Query: 670  --KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
               I   H  +  +L ET GVI+YQEQV++I  +L+ Y++ E D LRRAMGKKI E M +
Sbjct: 638  GAAIKYPHEALIDVLSETYGVILYQEQVLKIVNVLANYTMGEGDSLRRAMGKKIPELMAQ 697

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +E FI  A +N I+   A  IF L+ KF+ YGF KSH+ AYA+++Y TA++KT+Y  EF
Sbjct: 698  NREVFIKRAVENNITPDKAEEIFNLIDKFSGYGFPKSHSVAYALVAYWTAYLKTNYFKEF 757

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
             AA+M+ EM N++++  F  +AR   ++++ P VN    +F    + I + L AIK VG 
Sbjct: 758  FAATMSTEMYNIDRLSLFINEARDKGVKVLLPDVNLSAYEFLAEKDGIRFGLLAIKHVGI 817

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               + ++E   ++ FDS EDF   +  + LN++ LE+ VF+G+LD    +R ++  S+D 
Sbjct: 818  NIVKKVIEVRKNEKFDSYEDFVYNLKKEGLNKKQLEAFVFSGSLDKIHNNRKEMFSSIDR 877

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + ++ +    +  +    +F   K       ++EK    + S+  E E+  LG Y S HP
Sbjct: 878  VLEWCEKKFNSEEDLQMILFGG-KSQKIGLFSMEKSEEYSESLLLEKEKEFLGVYLSKHP 936

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKE 1026
            LD YK ++R +     +       G   R+  +V   ++  T+K G  +      +   +
Sbjct: 937  LDNYKLLMRTIDKTRMDSLKQ---GKRARVIGLVKDIKKMITKKTGEPMARFFVEDYGTK 993

Query: 1027 YEANFFP 1033
             E   FP
Sbjct: 994  AEVVCFP 1000


>gi|160947425|ref|ZP_02094592.1| hypothetical protein PEPMIC_01359 [Parvimonas micra ATCC 33270]
 gi|158446559|gb|EDP23554.1| hypothetical protein PEPMIC_01359 [Parvimonas micra ATCC 33270]
          Length = 1122

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/1042 (32%), Positives = 567/1042 (54%), Gaps = 51/1042 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     FVHL VH+ YSLL     +  +++K       A+AITD NN++  ++F ++   
Sbjct: 1    MAN--DFVHLNVHTEYSLLNNYNPIEKLIEKAKELNFKAMAITDYNNMYGVIDFYKRCKK 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              I+PIIGC+L +   +N               +I+LL     GY+ L +LVS +Y+++ 
Sbjct: 59   NSIKPIIGCELTLSYSNN------------EFYNIILLAKNNLGYKNLCKLVSNLYVVEN 106

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
              +   I    L++  ++ LI++ G     I +  +      A+  +L FK LF  + L+
Sbjct: 107  RNREF-ITFDELEKY-SKNLILIVGSKRSFIRKCLYSEDILSAKNEILNFKSLFNREDLF 164

Query: 184  VNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L  H    D    ++ ++ A    +  V TN+  +L   D+    +   ++   ++S+
Sbjct: 165  LELNFHFEENDELMMNRYLEFANEVNIETVVTNDVHYLENTDFNLFKIARCISKGVLLSE 224

Query: 243  KDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                  T  +++LK+  EM+ IFS L +++ NT  IA+RC+         LP +      
Sbjct: 225  LKEDNFTQAEYFLKSEEEMLKIFSTLEDSMYNTKMIAQRCNVEFDFSTYHLPEYKVP--- 281

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            D    +E+ L +  + G++ R             + ++R+++E +VI +M F+ YFLIV 
Sbjct: 282  DGVSTKEDYLHSLIIEGMKKRYEN-------LTDEIKKRVNYEFSVINKMGFTDYFLIVW 334

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DF+ +AKKN IPVGPGRGSGA S+ AY L ITDIDP+ + L+FERFLNP+R+SMPDFDID
Sbjct: 335  DFVNFAKKNKIPVGPGRGSGANSIVAYCLEITDIDPIEYDLIFERFLNPERVSMPDFDID 394

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            FC +RR+EVI YV  KYG   V+QIITFG+++ +AA+RD+GR L    S VD++ KLIPN
Sbjct: 395  FCNERREEVIDYVIKKYGKNHVSQIITFGTMKPRAAVRDIGRVLGYKLSTVDKVAKLIPN 454

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            +        A+ D    ++    D ++ +L+ IS+K E  +RH S HAAGIVI    L++
Sbjct: 455  NLDVTFK-NALRDSLELKKLYDEDINIKKLINISEKFEKFHRHISIHAAGIVITKEELTE 513

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSL 600
             +P+      +  VTQFNM  +E+ GL+K DFLGL+TLT++  ++  + +   +  D+  
Sbjct: 514  YIPL--AKSGENIVTQFNMVELEELGLLKMDFLGLRTLTVIDDTIKLVKKNYNRDIDIEK 571

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            I  +D    +L  T  T+GIFQ ES+GMR  L+ ++ D  ++++A  SL+RPGP++ I  
Sbjct: 572  ISLNDKNVLNLFKTADTIGIFQFESTGMRLFLKDLKADNFDELVAANSLFRPGPMNQIPN 631

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y   K     I  +   ++  LK T G+I+YQEQVMQIA+ L+GY+  +AD LR+A+GKK
Sbjct: 632  YIKNKRNPSGIRYLDKRLEKYLKSTYGIIVYQEQVMQIARELAGYTWGQADNLRKAIGKK 691

Query: 721  IKEEMDKQKERFIS------------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
              + M+  ++ FI             G  +NG+ + +A NIF+L+ +F +Y FNKSH+A 
Sbjct: 692  HMDIMEYNRKIFIYGLDNLDGSIKIKGCIRNGVDEKLAQNIFDLIVEFGNYAFNKSHSAC 751

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            Y++ +Y+TA++K +YP+E++   +   ++   +   + Q+ ++  I+I+ PSVN      
Sbjct: 752  YSLNAYRTAYLKYYYPLEYMVCLLNSVINYERQFFLYFQEIKRMGIKILLPSVNFSFYKI 811

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV-DSKKLNRRVLESLVF 887
               +  +    + IKG     A+ I+EA     F + ++F  R+ DSK +N   +E+L+ 
Sbjct: 812  STENKCMRVGFSQIKGFNRLLAKDIIEARKAGKFKNFKEFLERLKDSKNMNLISIENLIK 871

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            +GA D    +R+++L S + +        KN  +   ++ + +      +    ++   +
Sbjct: 872  SGAFDEIEKNRIEILNSCETLFTQIVSKSKNELSGQLSLISSD----FMQEKFVEYKNFS 927

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
                 E E+ VLGFY S HPLD YK  ++        +     +G   ++   V S + +
Sbjct: 928  KDDTLEFEKDVLGFYISAHPLDSYKEYIKSKNSMKLIDLKVLDKG-IYKVIVYVNSVKTR 986

Query: 1008 KTRKGSRIGWVTFSEPAKEYEA 1029
            K++K   +  +   + +   E 
Sbjct: 987  KSKKNKTLKIINVEDFSSSIEL 1008


>gi|332184948|ref|ZP_08386697.1| DNA polymerase III, alpha subunit [Sphingomonas sp. S17]
 gi|332014672|gb|EGI56728.1| DNA polymerase III, alpha subunit [Sphingomonas sp. S17]
          Length = 1157

 Score =  638 bits (1646), Expect = e-180,   Method: Composition-based stats.
 Identities = 463/1037 (44%), Positives = 628/1037 (60%), Gaps = 30/1037 (2%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
             L++ SS+++L+GA+    I  +  A+  PA  +TD N L++A+ FS  A  AG+QPIIG
Sbjct: 2    PLRIFSSFTMLDGAIDPKAIAAQAKANAFPAAGLTDRNGLYAAMAFSDAAKKAGVQPIIG 61

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
              L +   D         +  P V  I L      GY  L  LVS  +L    + +  + 
Sbjct: 62   TMLGVARPD------MPDSVTPVVDWIALYAQDMTGYDNLCALVSAAHLERPIELAAHVG 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
               L +  + GLI LT G  G I R F       A+      + +FGDRLY+ L R    
Sbjct: 116  FDTLGKF-STGLIALTAGGEGGIARLFAEGQPDRAKAYCDRLQAMFGDRLYIELARRDDP 174

Query: 193  -DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             +   E  ++ LAY  +LPLVATN   F      +AHD ++ +A+ST V   DRP+ +P+
Sbjct: 175  TEIAAEQDLIDLAYDRDLPLVATNPCCFADSGFRDAHDAMLCIANSTYVEMDDRPKSSPE 234

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +LK    M  +F+DLPEA++NT+ +A+RC+ +         + I       ++ E   L
Sbjct: 235  AWLKPAEVMKQLFADLPEAIDNTLVVAQRCAVMAP-----WRKPILPSLAGDREGEAAML 289

Query: 312  RNKAVAGLEVRLAQGAIAKGY----HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            R  A AGLE RL + A  +G       + Y +RL FE+++I +M F GYFLIVADFI+WA
Sbjct: 290  RRDATAGLEARLDRIAELEGEGEPGWREAYHERLTFEVDIIIQMGFPGYFLIVADFIKWA 349

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K ++IPVGPGRGSGAGSV A+ALTITD+DPL+  LLFERFLNP+R+SMPDFDIDFC+ RR
Sbjct: 350  KDHDIPVGPGRGSGAGSVVAWALTITDLDPLKLGLLFERFLNPERVSMPDFDIDFCETRR 409

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             EVIRYVQ KYG ++VAQIITFG L+A+A L+D GR LQM Y QVDRL KL+PN P  P 
Sbjct: 410  GEVIRYVQEKYGRDQVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPW 469

Query: 488  S-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               +A+       +    D  V RLL+++ KLEGL RH+STHAAG+VIGDRPL+QLVP+Y
Sbjct: 470  DLKRALNGVPELAKEYANDNQVRRLLDLATKLEGLPRHSSTHAAGVVIGDRPLAQLVPLY 529

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
            RD RSD+PVTQF+MK++E AGL+KFDFLGLKTL++LQK++  L +RGV VDL  + +DD 
Sbjct: 530  RDPRSDMPVTQFDMKFVEGAGLVKFDFLGLKTLSVLQKAVQLLRKRGVDVDLGALAWDDE 589

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             TY LL    T+G+FQLES GMR+ L  ++P    DIIALVSLYRPGP+DNI  +  RK 
Sbjct: 590  ATYALLQKGDTVGVFQLESEGMRRTLSAVRPTNFGDIIALVSLYRPGPMDNIPSFGRRKQ 649

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G E+I+  HPL++ +L ET G+ +YQEQVMQ AQ+L+GYSL  AD+LRRAMGKK+K EMD
Sbjct: 650  GTEEIIYPHPLLEQILSETYGIFVYQEQVMQAAQILAGYSLGGADLLRRAMGKKVKAEMD 709

Query: 727  KQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             Q+  F+ G  + NGI    A  +F+L+ KFA YGFNKSHAAAYA+++YQTAW+K H+P 
Sbjct: 710  AQRAIFVKGCQEVNGIPAQKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHHPH 769

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----DNRIYYSLAA 841
            EF AASM  +M   +K+  F  DAR+  + ++PP +N    +F V        + Y+L A
Sbjct: 770  EFYAASMCYDMALTDKLAIFVDDARRMGVTMLPPCINASQAEFDVEPYEDGLAVRYALGA 829

Query: 842  IKGVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +K VG      + +E  A   F SL+    RVD + +N+R LE+L  AGA D    +R  
Sbjct: 830  LKSVGEGAMEKLVVEREAGGAFASLDALAKRVDPRLMNKRQLETLASAGAFDGIEANRAG 889

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            +    + +   A    + RT+    +F  E     D I L        S R E E+   G
Sbjct: 890  VHAVAETVLAIAARTHEGRTSGQGGLFG-ETEVAGDAIKLPSGVRWTLSQRMEQEKEAFG 948

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATI---RGNNI--RLAAMVVSKQQKKTRKGSRI 1015
            FYFS HP+D +  I +  G + Y      I    G  I   +AA+V   + + + +G R 
Sbjct: 949  FYFSAHPVDRHAHIAKMHGARTYTSLTELIIPDDGARIGATMAALVEDARWRTSARGKRY 1008

Query: 1016 GWVTFSEPAKEYEANFF 1032
                 S+   ++ A  F
Sbjct: 1009 MMAQLSDATGQFLATCF 1025


>gi|145219820|ref|YP_001130529.1| DNA polymerase III, alpha subunit [Prosthecochloris vibrioformis DSM
            265]
 gi|145205984|gb|ABP37027.1| DNA polymerase III, alpha subunit [Chlorobium phaeovibrioides DSM
            265]
          Length = 1187

 Score =  638 bits (1646), Expect = e-180,   Method: Composition-based stats.
 Identities = 362/1069 (33%), Positives = 557/1069 (52%), Gaps = 58/1069 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL  H+ YS+    +    + +  A     +IA+TD   +F+  E   +A  +GI+ 
Sbjct: 2    DFVHLHAHTHYSMQSSPVFPGQLFEAAAKLGMQSIAVTDYGAIFNMPELFSEAEKSGIRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ +      + ++          S++LLV    GY+ L  L+SR           
Sbjct: 62   IIGSEILL-----RETSHHQDGRNTPASSLILLVQNDTGYRNLCILLSRAARDGFVDGMP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +  S  +E    GL+ L+G SSG I R+    +   A +  + ++ +FGDR Y+ LQRH
Sbjct: 117  HLERSLFREFH-GGLVCLSGYSSGRIGRSLLAGAVDDAREHAVFYRDIFGDRFYLELQRH 175

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247
              + D    S  + LA    + +VATNN  +L  +D + +  + A+     + SQ     
Sbjct: 176  NSHFDDELNSSTIALAEECGVGVVATNNIHYLERKDSDCYRAMAALKAKQKLSSQNLSAL 235

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               +H+LK+ +EM  +F D    L NTV IA  CSF+ +   PILP F   E      +E
Sbjct: 236  PGSEHFLKSPAEMRELFGDGHGELSNTVFIAESCSFVFREKEPILPHFPLPEGF---ADE 292

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR+    G + +   G        ++ R R++ EL VI +M FS YFLIV+D I  +
Sbjct: 293  AAYLRHLTAEGAKEKYP-GISEDEPSQEEVRDRIELELGVIEKMGFSSYFLIVSDLIAAS 351

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++    VGPGRGS AGS+ AY   IT IDPLR+ LLFERFLNP+R+SMPD DIDF    +
Sbjct: 352  RRLGYSVGPGRGSAAGSIVAYLTGITRIDPLRYKLLFERFLNPERLSMPDIDIDFTPVGK 411

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +V+ Y   +YG E VA+++  G+L AKAA+RD  R L +P S  D+L KL+P  P   +
Sbjct: 412  QKVLDYTVERYGAESVAKVVAIGTLGAKAAIRDAARVLDVPLSVADQLAKLVPQRPGITL 471

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A+++    +E   A P    L+  +  LEG  R+ S HA  +VI   PL + VP+Y 
Sbjct: 472  E-TALSEVRELKEQAEATPQNRELMTYASALEGRARNVSVHAGAVVITGGPLEEQVPLYV 530

Query: 548  ---------------------------DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
                                              +TQF+  WIE AGL+K D+LGL+TL 
Sbjct: 531  SNRIETEARVSLDAIAPEAPQPGKHADPSAGKQVITQFDKNWIETAGLLKIDYLGLETLA 590

Query: 581  LLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            ++ ++L  + +R   ++DL  +P  D +T+ +       GIFQ ESSGM+  +  +QP  
Sbjct: 591  VIDETLQLIRRRHNVEIDLEKVPMTDRKTFRIFQEGKMAGIFQFESSGMQSYMTRLQPTQ 650

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNR--------KNGKEKIVSIHPLIDPMLKETQGVIIY 691
            I DIIA+ +LYRPG ++  +             K+G+E I  +HP+++ +LKET GVI+Y
Sbjct: 651  IGDIIAMSALYRPGALNARIDEKRNAVDLFVDRKHGREVIDYMHPMLETILKETYGVIVY 710

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            QEQVMQI+Q++ G+SL++AD LR+AMGKK  E M++ K  F+ GA   G+  T+A  +FE
Sbjct: 711  QEQVMQISQVMGGFSLAKADNLRKAMGKKKPEIMERFKVDFVQGAVAQGVHDTLATRVFE 770

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            L+A+FA YGFNKSH+AAY V++Y T ++K HY +EF+ A +  E+ + E++K    +AR 
Sbjct: 771  LMAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFMTAILNSEIGDTERMKHLTDEARS 830

Query: 812  FNIQIMPPSVNTPCVDFKVGDN----RIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLE 866
            F I  +PPS+N     F V ++     I   L+AIK VG      I       + F +L 
Sbjct: 831  FGIATLPPSINRSDAIFSVEESPDGAAIRVGLSAIKQVGGAAKAIIAARLRRKREFLNLF 890

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            D  + VD + +NR+ LE L+ AGA D     R +L+ ++D   K+ Q   ++        
Sbjct: 891  DLTASVDQRVMNRKALECLILAGAFDEIDSHRARLIANIDKAIKFGQIENRSAALGQCGF 950

Query: 927  FAHEKGTFSDKITLEKFS---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
            F  E+G   +                 + ++E+R++GFY S HPL  ++   +       
Sbjct: 951  FTAEEGAVQEDGHYPDMENALQMPEQEKLQHEKRLVGFYLSRHPLSPWRRDWQAFASLHL 1010

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             E    +     R+  +VVS +  + RKG ++ + +  +   + +   F
Sbjct: 1011 NE-RDVVAQRQYRIIGLVVSTKPYQDRKGKQMLFGSIEDFTGKADFTVF 1058


>gi|119357011|ref|YP_911655.1| DNA polymerase III, alpha subunit [Chlorobium phaeobacteroides DSM
            266]
 gi|119354360|gb|ABL65231.1| DNA polymerase III, alpha subunit [Chlorobium phaeobacteroides DSM
            266]
          Length = 1190

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 369/1072 (34%), Positives = 567/1072 (52%), Gaps = 61/1072 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL VH+ YS+    +    +    +     +IA+TD    F+  E   +A  AGI+ 
Sbjct: 2    DFVHLHVHTHYSMQSSPVFPAELFSACSRFGMKSIAVTDYCAAFNMPELFAEAENAGIKL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG +L +     L+  +  +T     PS++LLV   EGY+ L  L+SR           
Sbjct: 62   VIGTELYL-----LESASHHQTRHTVSPSLILLVQNDEGYRHLCILLSRAAKDGFINGMP 116

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             I  S L+     GLI L+G SSG I +A    + + AE  +  +K +FGD  Y+ LQ H
Sbjct: 117  HIESSLLEACH-GGLIALSGYSSGRIGKALLSGAQEEAESFVRYYKSVFGDNFYLELQNH 175

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247
            R  +D       + +A  + + LVATNN  +L  +D   +  ++A      + SQ  +  
Sbjct: 176  RMPFDDELRKATIAIAEKYAVELVATNNVHYLERKDAGCYRAMVANRTKEKLSSQNLQAH 235

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               ++YLK+  EM  +F D+ +AL NTV I+ +C++  +     +         +   +E
Sbjct: 236  AESEYYLKSPEEMAMLFPDISKALTNTVIISDKCTYAFKKKDHPILPHF--HLPEGFSDE 293

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR+    G + + A    A G  ++D   R++ EL VI +M FS YFLIV+D I  +
Sbjct: 294  AAYLRHLTWEGAKEKYADSG-ADGISSEDVEARIELELGVIEKMGFSSYFLIVSDLIAAS 352

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++    VGPGRGS AGS+ AY   IT IDPL++ LLFERFLNP+R SMPD DIDF    +
Sbjct: 353  RRLGYSVGPGRGSAAGSIVAYLTGITRIDPLKYKLLFERFLNPERSSMPDIDIDFTPVGK 412

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +V+ Y   KYG E VA++I  G+L AKAA+RD GR L++P   VDRL KL+P  P   +
Sbjct: 413  QKVLEYTVEKYGSESVAKVIAIGTLGAKAAIRDAGRVLEVPLPVVDRLAKLVPTKPGITL 472

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +AI++    ++   + P    LL+ ++ LEG  R+ S HA  +VI   PL + VP+Y 
Sbjct: 473  E-KAISEVRELKQFVESSPQTRELLDYARALEGRARNVSMHAGAVVITAGPLEEQVPLYV 531

Query: 548  D-----------------------------VRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                                                VTQF+  WIEKAGL+K D LGL+T
Sbjct: 532  SNKIETEVRKYADELDLGEPDPVVSKTAEVADEKQVVTQFDKNWIEKAGLLKIDLLGLET 591

Query: 579  LTLLQKSLDFLAQRGVKVD-LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            L ++ ++L  + +R  +   L  +P +D +T+ +       GIFQ ESSGM+  +  +QP
Sbjct: 592  LAVIDETLRLIQRRHQRTIELEKLPMNDRKTFRIFQEGKMAGIFQFESSGMQNYMTRLQP 651

Query: 638  DCIEDIIALVSLYRPGPIDNI--------VVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
              I DIIA+ +LYRPG ++           ++ +RK+G+E I  +HP+++ +LKET GVI
Sbjct: 652  TQIGDIIAMSALYRPGALNARIDDHRNAVDLFVDRKHGREAIDYMHPMLEIILKETYGVI 711

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +YQEQVMQI+Q++ G+SL++AD LR+AMGKK  E M K +E FI GA   G+   +A  +
Sbjct: 712  VYQEQVMQISQVMGGFSLAKADDLRKAMGKKKPEIMSKYEEDFIKGAVAQGVHDALARRV 771

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            F L+A+FA YGFNKSH+AAY V++Y T ++K HY +EF+ A +  E+ ++E++K    +A
Sbjct: 772  FTLMAEFAGYGFNKSHSAAYGVLAYWTGYLKAHYTIEFMTAILNSEIGDIERMKHLTDEA 831

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIM--EASADKPFD 863
            + F I  +PPS+N     F V ++     I   L+AIK VG   AR I+       + F 
Sbjct: 832  KSFGIATLPPSINKSDTLFSVEEHNGKASIRVGLSAIKQVG-GAARAIVTSRMRKKREFI 890

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
            +L D  + +D + +NR+ LE L+ +GALD     R +L+ ++D   K+ Q   ++ T   
Sbjct: 891  NLFDLTASLDLRLMNRKALECLILSGALDEIDEHRARLIANIDKAIKFGQVQNRSVTLGQ 950

Query: 924  ENIFAHEKGTFSDKITLEKF---SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
               F  E G   + I             S +  +E++++GFY S HPL  Y+        
Sbjct: 951  CGFFTSEHGGVMEDIHYPDMDPADPMPDSEKLLHEKKLVGFYLSRHPLSTYRRDWEAFTT 1010

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                ++         ++  +VVS +  + RKG  + +    +   + +   F
Sbjct: 1011 LQL-DAKEVTPARQYKVIGVVVSVKPYQDRKGKPMLFGAIEDFTGKSDFTVF 1061


>gi|261749409|ref|YP_003257094.1| bifunctional DNA polymerase III subunit alpha/DNA polymerase III,
            epsilon subunit [Blattabacterium sp. (Periplaneta
            americana) str. BPLAN]
 gi|261497501|gb|ACX83951.1| putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase III,
            epsilon subunit (dnaQ) fusion protein [Blattabacterium
            sp. (Periplaneta americana) str. BPLAN]
          Length = 1435

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 341/1068 (31%), Positives = 551/1068 (51%), Gaps = 64/1068 (5%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG------ 66
            H+  H+S+S+L   + + +++++      PA+ ITD  N+  A  F     +A       
Sbjct: 251  HIHNHTSFSILYSTIDIQSLIERAIYFDMPAVGITDYGNMMGAFHFLNAIHSANKKYSSL 310

Query: 67   ---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
               I+ I+GC++ I   D        K         V L     GYQ L +L S  ++  
Sbjct: 311  KKYIKGIVGCEVFIS--DFYSQKKFTKEQPDKRYHQVFLSKNKAGYQNLSKLCSHGFIEG 368

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  R+    +++   + LI LTG     I +         AEK  L +K+LF +  Y
Sbjct: 369  FYAGVPRVGKDLIEKY-KKNLIALTGDLYAEIPQTILNKGKIKAEKVFLWWKELFEEDFY 427

Query: 184  VNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L RH   +  Y    +++ +  + +  +  NN+ +L  ++  AHD+L+ V +    S 
Sbjct: 428  IELLRHGLEEEDYVNKVLLKFSEKYHVKYIVQNNTFYLDPKESYAHDILLCVKNGEKKST 487

Query: 243  K-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                           + Y K+  EM  IFSD PE+ +   E+  +          +LP+F
Sbjct: 488  PIGRGRGYRFGFPNHEFYFKSPEEMKEIFSDFPESFDFLEELVNKVESYHLSQKVLLPKF 547

Query: 296  IEK--------ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                       + D   + E + LR+ A  G + R             + ++R+ FEL  
Sbjct: 548  KIPESFENSLDKIDGGHRGENSFLRSLAYEGAKKRYPHM-------TPEIQERIHFELKT 600

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I ++ + GYFLIV +FI  AKK NI VGPGRGS AGSV AY + ITDIDP++++LLFERF
Sbjct: 601  IEKIGYPGYFLIVQNFISQAKKMNISVGPGRGSVAGSVVAYCIGITDIDPIKYNLLFERF 660

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LNPDR+S+PD DIDF    R+++I +V  KYG  +VAQIIT+ ++ AK+A+RD  R L +
Sbjct: 661  LNPDRISLPDIDIDFDDKGREKIIEWVVQKYGKNQVAQIITYATMGAKSAIRDTARVLDL 720

Query: 468  PYSQVDRLCKLIPNDPAH------------PVSLQAIADDSRFREARLADPS-VDRLLEI 514
               + D L K++PN  +              +S + + +  + +       +   ++L+ 
Sbjct: 721  SLKKTDYLAKMVPNLLSLKILLSKKDHLLEKMSKEDMENVKKLKSISEKKDTLEGQVLQQ 780

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            ++ LEG  R    HA GI+I    + + VP+     SDL +TQF+   +E+AGL+K DFL
Sbjct: 781  AKILEGSIRSTGIHACGIIISSYDIKEYVPVSISKESDLLITQFDNHVVEQAGLLKMDFL 840

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            GLKTLT++++ L+ + +R     +S  P +D +TY L     T+ +FQ ES GM++ L  
Sbjct: 841  GLKTLTIIKEVLNIIKKRINVEKIS-FPLEDIKTYSLFQKGETVAVFQYESPGMQKYLRL 899

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
            ++PD  +D+IA+ +LYRPGP+  +  +  RK+GKE I    P ++  LKET G+ IYQEQ
Sbjct: 900  LKPDKFDDLIAMNALYRPGPLQYLTNFIYRKHGKEAITYDLPEMEEFLKETYGITIYQEQ 959

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VM IAQ ++G+S  E D LR+AMGKK KE ++K K +FI  AS+ G  K I   I++   
Sbjct: 960  VMLIAQKIAGFSKGETDFLRKAMGKKQKEVLNKMKNQFIIQASRKGYPKKILEKIWKDWE 1019

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+ Y FNKSHA  YA I++QTA++K H+P E++A+ ++  MDN++++  F ++ ++  I
Sbjct: 1020 YFSCYAFNKSHATCYAYIAFQTAYLKAHFPSEYMASVLSHNMDNIKQLTYFIKECKRMGI 1079

Query: 815  QIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRV 872
             ++ P +N     FKV D N I + +  IKGVG    ++I++   +  P+ S+ D   R+
Sbjct: 1080 SVIGPDINESDAFFKVTDSNCIRFGMRGIKGVGENAVKNIIQERENHGPYTSIFDLVKRI 1139

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQ--------SLDNIQKYAQWVEKNRTNKHE 924
            D + +N++ LESLV +G+LD F   R Q           +L+ I ++    +K +  +  
Sbjct: 1140 DLRIVNKKTLESLVLSGSLDKFHIHREQYFHFEEEKKLSTLEKIIRFGSKFQKRKMQEK- 1198

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            N    +K    +K  + K    N+  +   E+ VLG Y S HPLD Y    +       +
Sbjct: 1199 NFPKKKKKIEVEKPMIIKSEPWNNIYKLSKEKEVLGLYASSHPLDDYSYERKYFTNLSLD 1258

Query: 985  ESVATIR---GNNIRLAAMVVSK-QQKKTRKGSRIGWVTFSEPAKEYE 1028
            +     +   G  I +  ++    ++   + G + G     +     E
Sbjct: 1259 QLNKNEQKLIGKEIYICGILSKIEKKIYIKSGKKYGIFLLEDYHSSKE 1306


>gi|311031337|ref|ZP_07709427.1| DNA polymerase III DnaE [Bacillus sp. m3-13]
          Length = 1108

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 362/1022 (35%), Positives = 586/1022 (57%), Gaps = 45/1022 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL + SSYSLL  ++  + ++++       ++A+TD + ++ A++F +   +A I+PII
Sbjct: 4    VHLYIKSSYSLLNSSVRFSKLVERANELGLNSLALTDEDVMYGAVDFYKACKSANIKPII 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  L +                 +   ++LL    +G+  L++L S +           +
Sbjct: 64   GLTLSV---------LSDGEDGESTYPVILLAKNNQGFTNLMKLSSVVQTKSPQG----V 110

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               WL+   T+GLI +  GS   + +    N  Q AE  L  F++   D LY+ + R+  
Sbjct: 111  PKRWLKHY-TKGLIAILSGSESELAQ----NEEQTAEAYLEMFEQ---DCLYLGIDRNSA 162

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
              R +     +     ELP+VA +   +L +ED   ++ L ++   T +    +      
Sbjct: 163  ESREQSETTRK--RHSELPIVAMSKVHYLHKEDVFVYECLRSIKQGTKLESLPKEAPDYL 220

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
                  +++     D   ALENT +I+ +C   L+     LP +   E    ++  +  L
Sbjct: 221  RATNEMTQLFEDIPD---ALENTWKISNQCHVELEFGQAALPSYPVPE----EENADEYL 273

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                  GL           G  AQ+Y++RL +EL VI  MKFS YFLIV DF+ +A+   
Sbjct: 274  EKICWEGLHK-------RVGEPAQEYKERLQYELQVIKGMKFSDYFLIVWDFMYYARNAG 326

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I  GPGRGS AGS+ AY+L ITD+DP+   LLFERFLNP+R++MPD DIDF  ++RDEVI
Sbjct: 327  ILTGPGRGSAAGSLVAYSLFITDVDPIEHDLLFERFLNPERITMPDIDIDFQDNKRDEVI 386

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV  KYG   VAQIITFG+L AKAA RDV +AL +   +++ + K+IP+ P   +    
Sbjct: 387  RYVAEKYGQLHVAQIITFGTLAAKAAWRDVAKALNLSGKELEMISKMIPSRPGITLDAA- 445

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
              ++ + + A        R  + +QK+EGL RH+STHAAG+VI  +PL++L+P+    + 
Sbjct: 446  YQENEKLQSAINETKERKRAFQTAQKIEGLPRHSSTHAAGVVITHKPLTELIPIQ-AGQQ 504

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            D+ +TQ+ M+ +E+ GL+K DFLGL+ LT++Q S+    +R  K  +  IP DD  T+ L
Sbjct: 505  DIYLTQYTMETLEELGLLKMDFLGLRNLTMIQ-SIRHQVKRETKQHIEEIPLDDAATFRL 563

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
            L+   T GIFQLES GM++ L  ++P  +EDI+A+ +LYRPGP++ I ++  RK+G +K+
Sbjct: 564  LSEGDTSGIFQLESPGMKKVLTKLKPSNLEDIVAVNALYRPGPMEQIPLFIERKHGLKKV 623

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
               HP + P+L++T GVI+YQEQ+MQIA +++G+SL EAD+LRRA+GKK K+ + K++E 
Sbjct: 624  EYPHPDLIPILEKTFGVIVYQEQIMQIAAVMAGFSLGEADLLRRAVGKKKKDVLAKEREH 683

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            F+ G  K G  + +A ++++L+ +FADYGFN+SHA AY++ISY+ A++K +YP  F+A  
Sbjct: 684  FVEGCLKKGYDEKVANSVYDLIVRFADYGFNRSHAVAYSMISYELAYLKANYPKIFMATL 743

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
            ++  M + +K+ ++  + ++  IQ++PPS+N   + F+V +  I +SL  IKGVG    +
Sbjct: 744  LSSVMGSEQKLSQYITETKRKGIQVLPPSINKSGIAFQVEEAGIRFSLLTIKGVGVQAIK 803

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
             ++E    K F  L DFC+R  S K+NR+ +E L+F G++D F   R  LL +LD   ++
Sbjct: 804  ALIEERRKKEFSDLFDFCNRA-SSKVNRKTIEMLIFGGSMDEFEEDRATLLATLDVAMQH 862

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
            A+ V     +   + F  E+  F+ K    K      + + + E+  LGFY S HP + +
Sbjct: 863  AELVM-PSDDNQIDFFMEEE--FNIKPKYVKVEPLQLTEQLQLEKEALGFYLSKHPTEPF 919

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                +  G     +  +T      R+ + + +++  +T+KG  + ++T S+ + + EA  
Sbjct: 920  AAYFQLGGGCLILDLPSTGA-RKARVGSFISNERVIRTKKGDLMAFLTLSDQSGDLEAVA 978

Query: 1032 FP 1033
            FP
Sbjct: 979  FP 980


>gi|157964927|ref|YP_001499751.1| DNA polymerase III subunit alpha [Rickettsia massiliae MTU5]
 gi|157844703|gb|ABV85204.1| DNA polymerase III alpha chain [Rickettsia massiliae MTU5]
          Length = 1181

 Score =  635 bits (1638), Expect = e-179,   Method: Composition-based stats.
 Identities = 405/1081 (37%), Positives = 601/1081 (55%), Gaps = 79/1081 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  +++  +A++ PAI + D  NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKVVELASANKMPAICLADKGNLFGSLEFALYAVKKGLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I                     I+L+     GY+ L++L S  +  D  K  
Sbjct: 63   PIHGVILNIKYD------------IDIFAQILLIAKDETGYKNLLKLSSLTFTKDDRKIC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L E   EGLI L   + G + +     + + A       +++ GDR Y  + R
Sbjct: 111  DHIDFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMR 169

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +    E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  
Sbjct: 170  HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYPDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y ++  EM+ +FSDLP A++NTV +  RC F     A      +          E
Sbjct: 230  VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYF-----AAHANPPMLPNFATKDISE 284

Query: 308  ENELRNKAVAG-------LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             + +R  A  G                  +     +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TDLIRKDAKEGLLARLATKFKSENISLENQEELKTEYFARLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405  DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464

Query: 481  NDPAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PVS  QA+ +      A   +           +  +L+ S  LEGL+RH+STHAA
Sbjct: 465  FSAVNPVSLEQAMREVPELANAAKGNGLYNLDGEAELIKLVLDTSLILEGLHRHSSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  SD+ V  ++MK+ E AGLIKFDFLGL+TLT++      L 
Sbjct: 525  GIVIAGTDLVDIVPVYKDANSDMLVVGYSMKYAEIAGLIKFDFLGLQTLTVITDCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            ++G++VD + + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIK+EM++Q+E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAA+Y 
Sbjct: 705  DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            V+SYQTA++K +YP EFL A + LE++N +KI  F Q+A+   I+I  P++N     F V
Sbjct: 765  VLSYQTAYLKANYPAEFLVACLNLELNNHDKINFFLQEAKDNGIKITAPNINISEGYFSV 824

Query: 831  G------------------------------------DNRIYYSLAAIKGVGTTTARHIM 854
                                                    I ++L AIKGV     + + 
Sbjct: 825  KFSDTVIPHSVRPVIPRLDRGIQEISKDTVVKPRYDIAGAIIFALGAIKGVTPNFGKLVT 884

Query: 855  EASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
            +       F S+ DF  R+  K +N ++LE+L+ +G  D    +R+QLL S+  +  YA 
Sbjct: 885  DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYAT 944

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
               + + +   ++    K +      L      + +     E   +G + S HPL  Y+ 
Sbjct: 945  SYHEEQESNQFSL---IKVSSLSPTILVSSDYADKNTLAFYEFEAMGLFISNHPLTEYQE 1001

Query: 974  ILRKMGIKGYEES-VATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            I  ++ I    +       G   + LA ++  K  + + +G R   +  S+P   +E + 
Sbjct: 1002 IFSRLNILNTADLHNNLPDGTNRVSLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSI 1060

Query: 1032 F 1032
            F
Sbjct: 1061 F 1061


>gi|77459371|ref|YP_348878.1| error-prone DNA polymerase [Pseudomonas fluorescens Pf0-1]
 gi|123604378|sp|Q3KBG7|DNAE2_PSEPF RecName: Full=Error-prone DNA polymerase
 gi|77383374|gb|ABA74887.1| DNA polymerase III, alpha subunit [Pseudomonas fluorescens Pf0-1]
          Length = 1025

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 291/1032 (28%), Positives = 468/1032 (45%), Gaps = 76/1032 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   +  +       A+AITD   L   +   Q A +  +  I
Sbjct: 5    YAELHCLSNFSFQRGASSALELFQRAKKHGYQALAITDECTLAGIVRAWQAAKSVELPLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG ++ I+                  P +VLLV   EGYQ L  L+++     Q K   +
Sbjct: 65   IGSEIRIENG----------------PKLVLLVENIEGYQALCGLITQARRRTQ-KGQYQ 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I      E    GL++L       +  A         E+     K+ FG+RL++ +Q HR
Sbjct: 108  ILREDFSEPLP-GLLVL------WVPEAV-----DEVEE-GRWLKQTFGERLWLAVQLHR 154

Query: 191  G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
            G  D+ R + ++ LA   ++P VA+ +    +       D + A+ H   V++    R+ 
Sbjct: 155  GQNDQQRLAALLSLADELQIPAVASGDVHMHARGRRALQDTMTAIRHHVPVAEAGL-RLH 213

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P+     RS  V         L+ ++++ARRC+F L       P+ +  E    +    +
Sbjct: 214  PNGERHLRSLDVLRELYPQTLLDESLKLARRCTFDLGELRYQYPKELVPE----EHSASS 269

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR+    G+  R  +GA           +++D EL +IA + +  YFL V D +++A++
Sbjct: 270  WLRHLTEQGIAWRWPKGA------QPKVLKQIDDELELIAELGYESYFLTVHDVVRFARE 323

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A S   +AL IT+IDP R +LLFERF++ +R   PD D+DF  +RR+E
Sbjct: 324  QKIL-CQGRGSAANSAVCFALGITEIDPDRTTLLFERFMSRERNEPPDIDVDFEHERREE 382

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V++YV  +YG  R A      +  A  A+RDV +AL +P  Q++ L     +       +
Sbjct: 383  VLQYVFRRYGRRRAALTAVVSTYHASGAIRDVAKALGLPPDQINALADCCGHWSDETPPV 442

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            + + +           P + R+L ++ +L G  RH S H  G VI ++PL  LVP+    
Sbjct: 443  ERLRE----GGFDPESPLLHRVLSLTGQLIGFPRHLSQHPGGFVISEQPLDTLVPVENAA 498

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHET 608
             +D  + Q++   ++  GL+K D L L  L+ +++  D     R   + L+ IP +D  T
Sbjct: 499  MADRTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRHQDLSLATIPPEDRPT 558

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKN 666
            Y +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R+N
Sbjct: 559  YDMISRADTIGVFQIESRAQMSMLPRLRPQTFYDLVIEVAIVRPGPIQGGMVHPYLRRRN 618

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM- 725
             +E+     P ++ +LK T GV ++QEQVMQIA + + YS  EAD LRR+M    +    
Sbjct: 619  KEEEETYPSPELEVVLKRTLGVPLFQEQVMQIAIVAADYSPGEADQLRRSMAAWKRHGGL 678

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +  KER  +G  KNG S   A  IFE +  F  YGF +SHAA++A+++Y + W+K H P 
Sbjct: 679  EPHKERLAAGMKKNGYSPEFAAQIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEPA 738

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLA 840
             F  A +           +  QDAR+ ++QI P  V     D  +         I   L 
Sbjct: 739  AFACALINSWPMGFYSPDQILQDARRHHLQIRPVDVRASDWDCSLEPIAGEQPAIRMGLR 798

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             IKG     AR I +A A   F  + D   R     L+ R    L  AGAL      R +
Sbjct: 799  MIKGFREEDARSIEKARARGAFADVADLGERA---GLDSRAQALLADAGALRGLAGHRHR 855

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
                +  +QK               +FA         + L      + S     +   LG
Sbjct: 856  ARWEVAGVQK------------QLGLFAGLPSQEEPDVLLP---TPSVSEDLFTDYATLG 900

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
                 HPL + +  LR    +   + +    G  + +A +V  +Q+  T  G  + +VT 
Sbjct: 901  TTLGPHPLTLLRNELRARRCRSSRDLLEVEHGRPVSVAGLVTGRQRPGTASG--VTFVTL 958

Query: 1021 SEPAKEYEANFF 1032
             +         +
Sbjct: 959  EDEFGNVNVVVW 970


>gi|288553705|ref|YP_003425640.1| DNA polymerase III subunit alpha [Bacillus pseudofirmus OF4]
 gi|288544865|gb|ADC48748.1| DNA polymerase III alpha subunit [Bacillus pseudofirmus OF4]
          Length = 1117

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 356/1029 (34%), Positives = 568/1029 (55%), Gaps = 43/1029 (4%)

Query: 14   LQ--VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            L   V+S YSLL     +  ++ K       A+A+TD  N+F+A+ F +     GI+P+I
Sbjct: 4    LHTNVYSEYSLLSSTNRIKELVSKAKETGFTALALTDKGNMFAAVPFYKACLETGIKPVI 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ I   ++               S+ LL     GY+ L+++ + +   D       +
Sbjct: 64   GLEIPIKDNEHSG-------------SLRLLAKNTTGYKSLLKISTLLQTEDNL--RAGL 108

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL-FGDRLYVNLQRHR 190
                L+    + LI++      P+ +       + A++  + +      +  Y++L  + 
Sbjct: 109  APDDLRSRINDCLIII--PYDSPMHQLIKAGEVEAAKEWCVRWITRSKKEDWYIDLAGNA 166

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              + +    V Q A  + L L  +N   F S+E+YEA+  + A+     +  +D      
Sbjct: 167  DRESHHWEAVSQFASRYNLKLCGSNPVRFTSKENYEAYAAVRAIREGKTIHLQDEGHAER 226

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              YLK++ E+   FS +P AL    EI  +C+  + +      R++        +  +  
Sbjct: 227  SFYLKSKEELKQSFSPVPAALSGLGEIVEQCNITIDL----DRRYLPAYPFTKSEPAKEV 282

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L+   + G   R             + R+RL+ EL VI +M F+ YFLIVADF+Q A+K 
Sbjct: 283  LKKACLEGANKRFNH------TITDEVRRRLEKELAVIDQMGFNDYFLIVADFMQHARKR 336

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            N+  GPGRGS AGS+TAY L ITD++PL++ LLFERFLNP+R+S+PD DIDF   RRDEV
Sbjct: 337  NMMTGPGRGSAAGSLTAYVLYITDVNPLKYDLLFERFLNPERISLPDIDIDFPDHRRDEV 396

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YVQ KYG + VAQI TFG+L A+AA+RD G+AL      ++++ KLIP+ P   +   
Sbjct: 397  IQYVQEKYGPDHVAQIATFGTLAARAAIRDTGKALSCDSFLIEKVAKLIPSTPGITIKKA 456

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
             +  +   ++ R      ++LL I++ +EGL RH STHAAG+VI   PL++LV + +   
Sbjct: 457  -MEQERGLQQIRNDSEDANKLLSIAESIEGLMRHVSTHAAGVVISPVPLTELVALQKGQG 515

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
                     M  +E  GL+KFDFLGL+ LTLL++ L  + Q    +VD+  IP+DD +TY
Sbjct: 516  PVRLTQA-TMGIVEDIGLVKFDFLGLRNLTLLERVLSIIEQESGRRVDIHSIPWDDVKTY 574

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T G+FQLES GMR+ L  + P   EDI+A+ +LYRPGP+D I VY N K+ K 
Sbjct: 575  ELLANGDTTGVFQLESQGMRRVLRSLMPTEFEDIVAVNALYRPGPMDYIQVYINGKHKKA 634

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I  IH  + P+L +T GVI+YQEQ+MQIA  ++G+SL+ AD+LRRA+ KK K +++K +
Sbjct: 635  PINDIHEELTPILGKTYGVIVYQEQIMQIAVKMAGFSLARADLLRRAISKKNKADLEKSR 694

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              F+ GA + G ++ IA  +F+L+ +FA+YGFN+SHA AY++ISYQ A++K H+P  F  
Sbjct: 695  GDFLKGAKEKGYNEDIANKVFQLIERFANYGFNRSHAVAYSMISYQLAYLKAHFPTAFYT 754

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKGVGT 847
            A ++   +  EK+ +  Q+ ++  I IMPPS++   + F + D+   + + L  +  VG 
Sbjct: 755  ALLSSVWNTPEKLTELLQETKKRKIDIMPPSISKSGLLFTLEDHGHTVRFGLLPVSHVGV 814

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              A+HI++ + + P+  L D+C RV+ + +NRR  E+L+ AGA+D +G  R  LL +LD 
Sbjct: 815  QAAKHIIDTAREAPYKDLFDYCVRVNQRIVNRRATENLIKAGAMDEWGEDRATLLYNLDQ 874

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
               +A+ V   + ++   +F  +     +    E     +   +   EQ  LG Y SGHP
Sbjct: 875  AYSFAEKVLSFQ-DEMAGLFTLD----IETPQYEHVDPLSLQEKLSFEQEALGVYVSGHP 929

Query: 968  LDVYKPILRKMGIKGYEESVATIRGN---NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            ++    +L K       + +   +G     +R+A MV S ++  T+KG  + ++  ++ +
Sbjct: 930  IEQVSDVLAKYQRVLIADMIQDQKGQERKRLRIAGMVSSLKKITTKKGDPMAFLEAADES 989

Query: 1025 KEYEANFFP 1033
               E   FP
Sbjct: 990  GHCEVVVFP 998


>gi|45644755|gb|AAS73143.1| predicted DNA polymerase III, alpha subunit [uncultured marine gamma
            proteobacterium EBAC20E09]
          Length = 1148

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 356/1029 (34%), Positives = 592/1029 (57%), Gaps = 31/1029 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL+V S +S+ +G L+++ I++  +    P++A+TD +N+F  ++F  K  + GI+PI
Sbjct: 5    FSHLRVSSEFSISQGLLTIDQIVENASRLSMPSVALTDKSNMFGMVKFFNKCESVGIKPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  +                       I+ L  T  G++ L++++S  +  +       
Sbjct: 65   SGVTIRTIFD-----------GDDKSYEILCLAKTNIGHKNLMKIISNAHNSNSFN-VPI 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L  +  + +++++GG    I      N+ + A K++  F++ FGD   + +QR  
Sbjct: 113  IKFDDLISL-KDDILIISGGRGTHIFEYLKINNFEDANKKIDKFRESFGDDFILEVQRTN 171

Query: 191  GYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
              D       ++ ++Y   +PL+ATN+ LF S++DY+ H+  + +     ++  +R +  
Sbjct: 172  RSDELEYFKNILPISYEKNIPLIATNDVLFSSQDDYDTHETKVCINTGKTLNDPNREKLF 231

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   Y K+  EM  +F+D    ++NT EI+++C+  L      LP +   +  D     +
Sbjct: 232  SDQQYFKSSKEMSLLFNDYSSLVDNTNEISKKCNVSLSTKGYFLPEYPVPKEHDF----D 287

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + ++  +   L   ++  A        +Y+ RL++EL+ I +M FS YFLIV DFI+W+K
Sbjct: 288  SFIKKLSSDRLNTLISGLAKD---KQDEYKSRLNYELDQIKKMGFSSYFLIVYDFIEWSK 344

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N++PVGPGRGSGAGS+ AYAL IT +DP++  LLFERFLNP+R+SMPDFD+DFC ++RD
Sbjct: 345  NNDVPVGPGRGSGAGSLVAYALGITTLDPIKHGLLFERFLNPERLSMPDFDVDFCMEKRD 404

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI YV  KYG E V+QI TFG++ A+A +RDV RAL  P+   DR+ K+IP  P   + 
Sbjct: 405  LVIDYVSQKYGSEAVSQIATFGTMAARAVIRDVTRALGKPHPLGDRIAKMIPFTPGITLD 464

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +   F E    +  V  +++++ KLEG+ R+   HA G+VI    +S   P+Y D
Sbjct: 465  QAK-KEQPLFAETIRKEDEVREIVDLAYKLEGIARNVGKHAGGVVIAPGSISDFCPVYVD 523

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVDLSLIPFDD 605
              SD  +TQ++   +EK GL+KFDFLGL+TLT++ +++  + +      K+DL+ IP DD
Sbjct: 524  RSSDSIMTQYDKDDVEKIGLVKFDFLGLRTLTVIDRAVKSINEDLDEFNKLDLNKIPLDD 583

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNN 663
               +  L++  T  +FQLESSGMR  ++ ++P   E+I AL++LYRPGP++      + +
Sbjct: 584  KNVFKFLSSGKTTAVFQLESSGMRDLIKRLKPTKFEEITALLALYRPGPLNSGMHDEFVD 643

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK+G   +   H L++P+L+ET GVI+YQEQVM+ A++L+G+SL +AD+LRRAMGKK KE
Sbjct: 644  RKHGNSPVTYPHKLLEPILEETYGVIVYQEQVMEAARVLAGFSLGQADILRRAMGKKKKE 703

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM++Q+E F++G +KN IS + A +IF L+ +FA+YGFNKSH+AAYA+ISYQTA++KT+Y
Sbjct: 704  EMEEQREIFVNGCAKNDISTSNAEHIFNLINQFAEYGFNKSHSAAYALISYQTAYLKTYY 763

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAI 842
            P  F+A+ ++ E+ N +KI    Q+  + NI+++ P++      F V  +  I Y L AI
Sbjct: 764  PEYFMASVLSSELSNTDKIYSLIQECSRMNIKVLKPNILLGKKRFFVNANKEIEYGLGAI 823

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KGV ++   H+ E  A     +L DF  ++D K   ++ LE+L ++GA D    +R   +
Sbjct: 824  KGVASSFIDHVCEKRASIKLRNLWDFSQKIDIKLGGKKSLEALSYSGAFDSLAPTRNVAI 883

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
            + + ++ +           K  ++FA  +  F      +       + + E E++ LG+Y
Sbjct: 884  ECVKDMVRDGANRSAKNNLKSGDLFAQVEEDFDPYEKFKDLPKLKLTEKLEFEKKSLGYY 943

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             SGHP+   +  ++ +     ++           L  ++ + +Q K RKG  + +V FS+
Sbjct: 944  LSGHPVLAIENKIKNLRTLAIQQVTN--DTQKASLVCLINNVRQIKDRKGQPLIFVNFSD 1001

Query: 1023 PAKEYEANF 1031
                 +   
Sbjct: 1002 GTGSMDGII 1010


>gi|269959021|ref|YP_003328810.1| DNA polymerase III alpha subunit [Anaplasma centrale str. Israel]
 gi|269848852|gb|ACZ49496.1| DNA polymerase III alpha subunit [Anaplasma centrale str. Israel]
          Length = 1127

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 460/1033 (44%), Positives = 649/1033 (62%), Gaps = 49/1033 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ HS YSLLEG + +++++        PA+A+TD+ NLF +LEFS  A + G+QPI
Sbjct: 6    FVHLRTHSDYSLLEGMIKIDSLVAMCVDQNMPAVALTDSGNLFGSLEFSDCAASFGVQPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC + +                  + +I++L  + EG+  LI LVS  +  +Q  ++ R
Sbjct: 66   VGCNIMVHD------------AGEDLGNILMLTKSREGFANLISLVSNGFRENQSGKANR 113

Query: 131  ICLSWLQE---------IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
            + +S L            G + ++           RA    S       +    + FG  
Sbjct: 114  VNVSDLLRQGSGLLLLTGGHDDILA----------RALLRKS--AGLGAINAVLEAFGSD 161

Query: 182  LYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            +YV LQRH    +   E  ++  AY   +PLVATN+  F   +D++AHDVL  ++  T +
Sbjct: 162  VYVELQRHGLESQKEVEGLLISFAYERNVPLVATNDVFFARRDDFQAHDVLSCISDGTYI 221

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             Q+ R R+T +HY K   EM  +F+D+PEA+ NT  IARRCSFI ++  P LP F   + 
Sbjct: 222  VQEGRRRLTEEHYFKTSKEMFELFADIPEAVRNTPMIARRCSFIAEIRKPSLPHFPCSDG 281

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                + E  EL   A  GLE RL    I        Y  RL +EL V+  M +SGYFLIV
Sbjct: 282  ----RTEAEELTECAKTGLEARLRTKNID-EDRRAKYHDRLQYELGVVISMDYSGYFLIV 336

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFI W+KKN+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNP+R+SMPDFDI
Sbjct: 337  ADFICWSKKNDIMVGPGRGSGAGSLIAWSLGITDLDPIEFGLIFERFLNPERVSMPDFDI 396

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ++RD VI YV+ KYG   VA IITFG LQA+A LRDVGR +Q+PY+Q+D++CK+IP
Sbjct: 397  DFCQEKRDRVIEYVREKYG--YVAHIITFGKLQARAVLRDVGRVMQIPYAQIDKICKMIP 454

Query: 481  NDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             DP  PV+  +AI  D   +  + +D +V +LLEIS KLEGLYRHAS HAAGIVI D+PL
Sbjct: 455  LDPVSPVTLSEAIEMDQNLKREQESDHTVAKLLEISLKLEGLYRHASVHAAGIVICDKPL 514

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
               VP+Y D    LP+TQ+NMK++EKAGL+KFDFLGL+TLT+L +    +  RG+ ++LS
Sbjct: 515  EDFVPLYYDQSCSLPITQYNMKYVEKAGLVKFDFLGLRTLTVLDQVRSLIQDRGISIELS 574

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +P DD +TY +L+T  ++G+FQLES+GMR+A+  ++PD I+DIIAL+SLYRPGP++NI 
Sbjct: 575  ELPLDDSKTYEMLSTGNSVGVFQLESAGMREAISKLRPDGIQDIIALISLYRPGPMNNIA 634

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            +Y  RK+G E    IHP+++ +LKET GVIIYQEQVM+IA++L+GYSL  AD+LRRAMGK
Sbjct: 635  IYIARKHGLESPDYIHPMLEGVLKETFGVIIYQEQVMEIARILAGYSLGSADLLRRAMGK 694

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KIKEEMDKQ++ F++GA KNGI +  A  IF+L+AKFA YGFNKSHAAAYA+IS+QTA++
Sbjct: 695  KIKEEMDKQRQNFVNGAVKNGIDRGKASYIFDLVAKFAGYGFNKSHAAAYALISFQTAYL 754

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K +Y  EF  ASM L++ + +K++  CQ A+   ++++PP VN+  V F +  + I Y L
Sbjct: 755  KANYTKEFFTASMNLDIGDKDKLELLCQQAKACGVRVLPPDVNSSGVLFTISGDAIKYGL 814

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             A+K VG T AR ++   A K +  + DF   + +K   +RV+ESL+ +GALD    +R 
Sbjct: 815  GALKNVGQTAAREVVPE-AGKQYSDIWDFARNMRAKWACKRVMESLIKSGALDSIHPNRR 873

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            QL +SL  I         +  +K  N+F   +G       L +    +   +  +E   L
Sbjct: 874  QLFESLGTILDVIDDTRNSAESKQFNLFGITEGH-----KLLEVEDWSEEEKIAHEFSTL 928

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            GFY   HPL  Y+ +LR +GI+   E   ++     + A  + S  + ++    R   V 
Sbjct: 929  GFYLRYHPLAKYEGVLRGLGIRFVSECQNSVESGIKKSAGTISSV-RIRSANKERFAVVR 987

Query: 1020 FSEPAKEYEANFF 1032
             S+P    +  F+
Sbjct: 988  ISDPYGVNDVAFY 1000


>gi|56416564|ref|YP_153638.1| DNA polymerase III alpha subunit [Anaplasma marginale str. St.
            Maries]
 gi|56387796|gb|AAV86383.1| DNA polymerase III alpha subunit [Anaplasma marginale str. St.
            Maries]
          Length = 1127

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 462/1033 (44%), Positives = 652/1033 (63%), Gaps = 49/1033 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ HS YSLLEG + + +++        PA+A+TD+ NLF +LEFS  A + G+QPI
Sbjct: 6    FVHLRTHSDYSLLEGMIKIESLVAMCVDQNMPAVALTDSGNLFGSLEFSDCAASFGVQPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC + +                  + +I++L  + EG+  LI LVS  +  +Q  ++ R
Sbjct: 66   VGCNIMVHD------------AGEDLGNILMLTKSHEGFVNLISLVSNGFKENQSGKANR 113

Query: 131  ICLSWLQE---------IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
            + ++ L            G + ++           RA            +    + FG+ 
Sbjct: 114  VDVNSLLRQGSGLLLLTGGHDDILA----------RALL--GKSAGMGAINAILETFGND 161

Query: 182  LYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            +YV LQRH    +   E  ++  AY   +PLVATN+  F+   D++AHDVL  ++  T +
Sbjct: 162  VYVELQRHGLESQKEVEGLLIGFAYERNIPLVATNDVFFVRRGDFQAHDVLSCISDGTYI 221

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             Q+ R R+T +HY K   EM  +FSD+PEA+ NT  IARRC+FI ++  P LP F   + 
Sbjct: 222  VQEGRRRLTEEHYFKTSKEMFELFSDIPEAVRNTPMIARRCAFIAEIRKPSLPHFPCSDG 281

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                + E  EL   A  GLE RL    I  G   + Y  RL +EL ++  M +SGYFLIV
Sbjct: 282  ----RTEAEELTECAKTGLEARLRAKNID-GDKKEQYHNRLQYELGIVISMDYSGYFLIV 336

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFI W+KKN+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNP+R+SMPDFDI
Sbjct: 337  ADFICWSKKNDIMVGPGRGSGAGSLIAWSLGITDLDPIEFGLIFERFLNPERVSMPDFDI 396

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ++RD+VI YV+ KYG   VA IITFG LQA+A LRDVGR +Q+PY+Q+D++CK+IP
Sbjct: 397  DFCQEKRDKVIEYVREKYG--YVAHIITFGKLQARAVLRDVGRVMQIPYAQIDKICKMIP 454

Query: 481  NDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            +DP  PV+  +AI  D   +  + +D +V +L EIS KLEGLYRHAS HAAGIVI D+PL
Sbjct: 455  HDPVSPVTLSEAIEMDQNLKREKESDNTVAKLFEISLKLEGLYRHASVHAAGIVICDKPL 514

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
               VP+Y D    LP+TQ+NMK++EKAGL+KFDFLGL+TLT+L +    +  RG  ++LS
Sbjct: 515  EDFVPLYYDQSCSLPITQYNMKYVEKAGLVKFDFLGLRTLTVLDQVRSLIQDRGGSIELS 574

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +P DD +TY +L+T  ++G+FQLES+GMR+A+  ++PD I+DIIAL+SLYRPGP++NI 
Sbjct: 575  ELPLDDGKTYEMLSTGNSVGVFQLESAGMREAISKLRPDGIQDIIALISLYRPGPMNNIA 634

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            +Y  RK+G EK   IHP+++ +LKET GVIIYQEQVM+IA++L+GYSL  AD+LRRAMGK
Sbjct: 635  IYIARKHGLEKPDYIHPMLEGVLKETFGVIIYQEQVMEIARILAGYSLGGADLLRRAMGK 694

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KIKEEMDKQ++ F++GA KNGI +  A  IF+L+AKFA YGFNKSHAAAYA+IS+QTA++
Sbjct: 695  KIKEEMDKQRQDFVNGAIKNGIDRGKASYIFDLVAKFAGYGFNKSHAAAYALISFQTAYL 754

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K +Y  EF  ASM L++ + +K++  CQ AR   +Q++PP VN+  V F +  + I Y L
Sbjct: 755  KANYTKEFFTASMNLDIGDKDKLELLCQQARACGVQVLPPDVNSSGVLFTISGDAIKYGL 814

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             A+K VG T AR ++   A K +  + DF   + +K   +RV+ESL+ +GALD    +R 
Sbjct: 815  GALKNVGQTAAREVVPE-AGKKYSDIWDFARNMRAKWACKRVMESLIKSGALDSIHPNRR 873

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            QL +SL  I         +  +K  N+F   +G       L +    +   + E+E   L
Sbjct: 874  QLFESLGTILDVIDDTRNSAESKQFNLFGITEGH-----KLLEVEDWSEEEKIEHEFSTL 928

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            GFY   HPL  Y+ ILR +G+K   E   +      + A ++ S  + ++    R   V 
Sbjct: 929  GFYLRYHPLAKYEGILRGLGVKFVSECQDSSESGVKKSAGVISSV-RIRSANKERFAVVR 987

Query: 1020 FSEPAKEYEANFF 1032
             S+P    +  F+
Sbjct: 988  ISDPYGVNDVAFY 1000


>gi|312140803|ref|YP_004008139.1| DNA polymerase iii alpha subunit dnae2 [Rhodococcus equi 103S]
 gi|311890142|emb|CBH49460.1| DNA polymerase III alpha subunit DnaE2 [Rhodococcus equi 103S]
          Length = 1093

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 284/1032 (27%), Positives = 476/1032 (46%), Gaps = 61/1032 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS++S L+GA     ++++       AIA+TD + ++  + F++ A   G++ +
Sbjct: 59   YAELHTHSAFSFLDGASPPEELVEEAVRLGLDAIALTDHDGMYGVVRFAEAAKELGMRTV 118

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +D       T +  TP P    +++L    EGY+RL   ++  +L    K   R
Sbjct: 119  FGAELSLD------ATPRTGTPDPGGTHLLVLARGQEGYRRLSRQIAAAHLAGGEKGKPR 172

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 L E       +LTG   G +  A        AE  L      FG DR+ V L   
Sbjct: 173  YDYDALTEAAGGHWQILTGCRKGHVRSALAAGGPDAAEAALRDLVDRFGADRVTVELTHR 232

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
                D    + + ++A   +LP++A+  + F           + AV     + +      
Sbjct: 233  GLPEDDEINAALAEIATRQQLPVIASTAAHFAGPPRRRLAMAMAAVRARQSLDEAAGWLA 292

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T   +L++ +EM  +F+  PEA+     +   C+F L++ AP LP F   +       E
Sbjct: 293  PTGGAHLRSGAEMARLFAQCPEAVAGAAALGLECAFDLRLIAPKLPPFDVPDG----HTE 348

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR   + G   R    +     +AQ     ++ EL++I R+ F GYFL+V D + + 
Sbjct: 349  ASWLRELTMQGARRRYGPPSANPAAYAQ-----IEHELDIIERLTFPGYFLVVHDIVSFC 403

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N+I    GRGS A S   YA+ IT++DP+R  LLFERFL+P+R   PD D+D   DRR
Sbjct: 404  KDNDIL-CQGRGSAANSAVCYAIGITNVDPVRNKLLFERFLSPERDGPPDIDVDIESDRR 462

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +E I++V  KYG E  AQ+    + + K+++RD+ RAL     Q D   K +        
Sbjct: 463  EEAIQHVYTKYGREYAAQVANVITYRGKSSVRDMARALGFSQGQQDAWSKQVSRWTGVGQ 522

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                                   +LE++ ++EG  RH   H+ G+VI DRP++ + P+  
Sbjct: 523  E--------------TDTDIPPAVLELAAQIEGFPRHLGIHSGGMVICDRPIADVCPVEW 568

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                +  V Q++       GL+KFD LGL  L+ L   +D +A+   ++VDL+ +   + 
Sbjct: 569  ARMENRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHYMIDLVAEHKGIEVDLAQLDLSEQ 628

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664
              Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y  R
Sbjct: 629  AVYEMLQRADSVGVFQVESRAQMATLPRLKPRNFYDLVVEVALIRPGPIQGGSVHPYIRR 688

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723
            +NG+E +V  HP ++  L  T GV ++QEQ+MQ+A   +G+S +EAD LRRAM  K+  E
Sbjct: 689  RNGREPVVYDHPCLEKALARTLGVPLFQEQLMQMAVDAAGFSAAEADQLRRAMGSKRSPE 748

Query: 724  EMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            +M++ + R   G  + +GI+  +A  I+E L  FA++GF +SH+ ++A + + ++W K H
Sbjct: 749  KMERLRGRLYDGMRELHGITGDVADRIYEKLHAFANFGFPESHSQSFASLVFYSSWFKLH 808

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIYYSLA 840
            +P  F A  +  +       +    DAR+  +++    VN       +      +   L 
Sbjct: 809  HPAAFCAGLLRAQPMGFYSPQSLVADARRHGVRVHGADVNASLAHATLEACGTEVRLGLG 868

Query: 841  AIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             ++G+G   A  I+ A A D PF S+ D   R+D   L    +ESL  AGAL CFG SR 
Sbjct: 869  EVRGIGDALAERIVAARAEDGPFRSILDLTGRID---LTTGQVESLATAGALSCFGLSRR 925

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            + L                   + + +      T +           +       +    
Sbjct: 926  EALW----------AAGAAAGERPDRLPGMGASTRA-----PALPGMSDLELAAADVWAT 970

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G     +P +  +P L  +G+      +    G+ + +   V  +Q+  T  G  + +V 
Sbjct: 971  GVSPDSYPTEFLRPQLDALGVLPASRLLDVPDGDRVLVGGAVTHRQRPATAAG--VTFVN 1028

Query: 1020 FSEPAKEYEANF 1031
              +         
Sbjct: 1029 LEDETGMVNVVC 1040


>gi|222474932|ref|YP_002563347.1| DNA polymerase III, alpha subunit (dnaE) [Anaplasma marginale str.
            Florida]
 gi|255002906|ref|ZP_05277870.1| DNA polymerase III, alpha subunit (dnaE) [Anaplasma marginale str.
            Puerto Rico]
 gi|222419068|gb|ACM49091.1| DNA polymerase III, alpha subunit (dnaE) [Anaplasma marginale str.
            Florida]
          Length = 1127

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 463/1033 (44%), Positives = 652/1033 (63%), Gaps = 49/1033 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL+ HS YSLLEG + + +++        PA+A+TD+ NLF +LEFS  A + G+QPI
Sbjct: 6    FVHLRTHSDYSLLEGMIKIESLVAMCVDQNMPAVALTDSGNLFGSLEFSDCAASFGVQPI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC + +                  + +I++L  + EG+  LI LVS  +  +Q  ++ R
Sbjct: 66   VGCNIMVHD------------AGEDLGNILMLTKSHEGFVNLISLVSNGFKENQSGKANR 113

Query: 131  ICLSWLQE---------IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
            + ++ L            G + ++           RA            +    + FG+ 
Sbjct: 114  VDVNSLLRQGSGLLLLTGGHDDILA----------RALL--GKSAGMGAINAILETFGND 161

Query: 182  LYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            +YV LQRH    +   E  ++  AY   +PLVATN+  F+   D++AHDVL  ++  T +
Sbjct: 162  VYVELQRHGLESQKEVEGLLIGFAYERNIPLVATNDVFFVRRGDFQAHDVLSCISDGTYI 221

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             Q+ R R+T +HY K   EM  +FSD+PEA+ NT  IARRC+FI ++  P LP F     
Sbjct: 222  VQEGRRRLTEEHYFKTSKEMFELFSDIPEAVRNTPMIARRCAFIAEIRKPSLPHFPCSGG 281

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                + E  EL   A  GLE RL    I  G   + Y  RL +EL ++  M +SGYFLIV
Sbjct: 282  ----RTEAEELTECAKTGLEARLRAKNID-GDKKEQYHNRLQYELGIVISMDYSGYFLIV 336

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            ADFI W+KKN+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNP+R+SMPDFDI
Sbjct: 337  ADFICWSKKNDIMVGPGRGSGAGSLIAWSLGITDLDPIEFGLIFERFLNPERVSMPDFDI 396

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ++RD+VI YV+ KYG   VA IITFG LQA+A LRDVGR +Q+PY+Q+D++CK+IP
Sbjct: 397  DFCQEKRDKVIEYVREKYG--YVAHIITFGKLQARAVLRDVGRVMQIPYAQIDKICKMIP 454

Query: 481  NDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
            +DP  PV+  +AI  D   +  + +D +V +L EIS KLEGLYRHAS HAAGIVI D+PL
Sbjct: 455  HDPVSPVTLSEAIEMDQNLKREQESDNTVAKLFEISLKLEGLYRHASVHAAGIVICDKPL 514

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
               VP+Y D    LP+TQ+NMK++EKAGL+KFDFLGL+TLT+L +    +  RGV ++LS
Sbjct: 515  EDFVPLYYDQSCSLPITQYNMKYVEKAGLVKFDFLGLRTLTVLDQVRSLIQDRGVSIELS 574

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +P DD +TY +L+T  ++G+FQLES+GMR+A+  ++PD I+DIIAL+SLYRPGP++NI 
Sbjct: 575  ELPLDDGKTYEMLSTGNSVGVFQLESAGMREAISKLRPDGIQDIIALISLYRPGPMNNIA 634

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            +Y  RK+G EK   IHP+++ +LKET GVIIYQEQVM+IA++L+GYSL  AD+LRRAMGK
Sbjct: 635  IYIARKHGLEKPDYIHPMLEGVLKETFGVIIYQEQVMEIARILAGYSLGGADLLRRAMGK 694

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            KIKEEMDKQ++ F++GA KNGI +  A  IF+L+AKFA YGFNKSHAAAYA+IS+QTA++
Sbjct: 695  KIKEEMDKQRQDFVNGAIKNGIDRGKASYIFDLVAKFAGYGFNKSHAAAYALISFQTAYL 754

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K +Y  EF  ASM L++ + +K++  CQ AR   +Q++PP VN+  V F +  + I Y L
Sbjct: 755  KANYTKEFFTASMNLDIGDKDKLELLCQQARACGVQVLPPDVNSSGVLFTISGDAIKYGL 814

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             A+K VG T AR ++   A K +  + DF   + +K   +RV+ESL+ +GALD    +R 
Sbjct: 815  GALKNVGQTAAREVVPE-AGKKYSDIWDFARNMRAKWACKRVMESLIKSGALDSIHPNRR 873

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            QL +SL  I         +  +K  N+F   +G       L +    +   + E+E   L
Sbjct: 874  QLFESLGTILDVIDDTRNSAESKQFNLFGITEGH-----KLLEVEDWSEEEKIEHEFSTL 928

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            GFY   HPL  Y+ ILR +G+K   E   +      + A ++ S  + ++    R   V 
Sbjct: 929  GFYLRYHPLAKYEGILRGLGVKFVSECQDSSESGVKKSAGVISSV-RIRSANKERFAVVR 987

Query: 1020 FSEPAKEYEANFF 1032
             S+P    +  F+
Sbjct: 988  ISDPYGVNDVAFY 1000


>gi|254822689|ref|ZP_05227690.1| error-prone DNA polymerase [Mycobacterium intracellulare ATCC 13950]
          Length = 1095

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 281/1039 (27%), Positives = 482/1039 (46%), Gaps = 62/1039 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             +S  +  L  HS++S L+GA +   ++++ A     A+A+TD + L+ A+ F++ A   
Sbjct: 57   ARSVPYAELHAHSAFSFLDGASTPEELVEEAARLGLRALALTDHDGLYGAVRFAEAAAEL 116

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
             ++ + G +L +          + + P P  P +++L    EGY+RL   ++  +L    
Sbjct: 117  DMRTVFGAELSL------GGEARTERPDPAGPHLLVLARGPEGYRRLSRQLAAAHLAGGE 170

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184
            K   R     L E       +LTG   G + +A        AE+ L      FG   + V
Sbjct: 171  KGKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSDGGPDAAERALADLVDRFGAQSVSV 230

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L  H    D  R + +  LA    + +VAT  + F           + A+     +   
Sbjct: 231  ELTHHGQPLDDERNAVLAALAPRFGVGVVATTGAHFAGPSRRRLAMAMGAIRARESLDSA 290

Query: 244  DRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                      +L++ +EM  +F+  P+ +    E+  +C+F L + AP LP F   +   
Sbjct: 291  AGWLAPLGGSHLRSGAEMARLFAGGPDVVTAAAELGEQCAFGLALIAPQLPPFDVPDG-- 348

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                E++ LR   +AG            G +A     +++ EL VIA+++F GYFL+V D
Sbjct: 349  --HTEDSWLRQLTMAGAR-------DRYGPNAPRAYAQIEHELKVIAQLQFPGYFLVVHD 399

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
              ++ + NNI    GRGS A S   YAL +T +DP+   LLFERFL+P R   PD D+D 
Sbjct: 400  IARFCRDNNIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDMDI 458

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              D+R++VI+YV +KYG +  AQ+    + + K A+RD+ RAL     Q D   K I + 
Sbjct: 459  ESDQREKVIQYVYDKYGRDYAAQVANVITYRGKIAVRDMARALGFSQGQQDAWSKQISHW 518

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                     +AD     +          +++++ ++  L RH   H+ G+VI DRP++ +
Sbjct: 519  GG-------LADSPEVEDIPEP------VIDLANQIRNLPRHMGIHSGGMVICDRPIADV 565

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLI 601
             P+      +  V Q++       GL+KFD LGL  L+ L  ++D +A+   ++VDL+ +
Sbjct: 566  CPVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGIEVDLARL 625

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIV 659
               +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++ 
Sbjct: 626  DLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVH 685

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-G 718
             Y  R+NG++ +V  HP ++P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAM  
Sbjct: 686  PYIRRRNGEDPVVYDHPSMEPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGS 745

Query: 719  KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            K+  E M + + RF  G    +G    +    +E L  FA++GF +SHA ++A + + ++
Sbjct: 746  KRSTERMRRLRGRFYEGMRALHGAPDEVIDRTYEKLEAFANFGFPESHALSFASLVFYSS 805

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRI 835
            W K H+P  F AA +  +       +    DAR+  + +  P VN       +      +
Sbjct: 806  WFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAHATLENTGTEV 865

Query: 836  YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
               L A++ +G   A  ++E    + PF SL D  SR+   +L+    E+L  AGA  CF
Sbjct: 866  RLGLGAVRHIGDDLAEQLVEERKANGPFASLLDVTSRL---QLSVPQTEALATAGAFACF 922

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            G SR + L +               T +   +      +      +      +       
Sbjct: 923  GMSRREGLWAAGAA----------ATQRPGRLPGVGSSS-----HVPALPGMSELELAAA 967

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +    G     +P    +  L  MG+   E+  +   G+ + +A  V  +Q+  T +G  
Sbjct: 968  DVWATGISPDSYPTQFLREDLDAMGVVPAEKLGSVPDGDRVLIAGAVTHRQRPGTAQG-- 1025

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + ++   +          P
Sbjct: 1026 VTFLNLEDETGMVNVLCAP 1044


>gi|167033740|ref|YP_001668971.1| error-prone DNA polymerase [Pseudomonas putida GB-1]
 gi|166860228|gb|ABY98635.1| DNA polymerase III, alpha subunit [Pseudomonas putida GB-1]
          Length = 1026

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 282/1036 (27%), Positives = 452/1036 (43%), Gaps = 76/1036 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P +  L   S++S   GA S + +  +       A+AITD   L   +   Q A A  
Sbjct: 2    NTPGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKAHQ 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ I+G ++ +                   P +VLLV    GYQ L  L++R     + K
Sbjct: 62   LRLIVGSEVQLHDG----------------PKLVLLVENLTGYQNLCALITRARRRAE-K 104

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               ++    LQ+   +GL+ L                  V +      + +F +RL++ +
Sbjct: 105  GEYQLFRDDLQQ-HHQGLLALWVADDS------------VDKATGEWLRSVFAERLWLAV 151

Query: 187  QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              HRG  D  R  ++  LA    +  VA  +            D + A+     V++  R
Sbjct: 152  HLHRGCDDAMRLQRLQALAADVGVRAVACGDVHMHVRGRRALQDCMTAIRQHCQVNEAGR 211

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 +     RS+           L  T+ IA+RC F L       P  +  E      
Sbjct: 212  FLF-ANGERHLRSQAQLGELYPANLLAETLTIAQRCQFDLSELKYQYPCELVPEG----H 266

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR+    GL +R   G       ++  R  L  EL +I  + +  YFL V D + 
Sbjct: 267  TPASWLRDLCEQGLPLRWPNG------PSEKVRDVLAKELALIEELGYESYFLTVHDIVA 320

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I    GRGS A SV  + L IT++DP+   LLFERFL+ +R   PD D+DF  D
Sbjct: 321  FARSQRIL-CQGRGSAANSVVCFVLGITELDPMEHHLLFERFLSRERNEPPDIDVDFEHD 379

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YV  +YG  R A      +  A  A+RDV R L +P  QVD L K        
Sbjct: 380  RREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARVLGLPADQVDALAKCCGRWSDR 439

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                Q +A+           PS+ R+L ++ +L G  RH S H  G VI  +PL QLVP+
Sbjct: 440  IPDEQRLAE----AGFEAGSPSLRRVLVLAGELIGFPRHLSQHPGGFVISQQPLDQLVPV 495

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFD 604
                 +   V Q++   ++  GL+K D L L  L+ L++  D     RG ++ L+ IP +
Sbjct: 496  ENAAMAQRTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDLLQRHRGRQLTLATIPSE 555

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662
            D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+   
Sbjct: 556  DPATYAMISRAETMGVFQIESRAQMAMLPRLRPTTFYDLVIEVAIVRPGPIQGDMVHPYL 615

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R+  +E +      +  + + T GV ++QEQVM++A + + Y+  EAD LRR+M    +
Sbjct: 616  RRRLKQEPVTYPSAQLKAVFERTLGVPLFQEQVMELAMVAADYTPGEADQLRRSMAAWKR 675

Query: 723  EEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
                +  +ER + G  +NG     A  IFE +  F  YGF +SHAA++A++ Y ++W+K 
Sbjct: 676  HGGLEPHRERLVQGMLRNGYELAFAQRIFEQIKGFGSYGFPESHAASFALLCYASSWLKC 735

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIY 836
            H P  F  A +           +  Q+AR+  I++ P  V     D  +  +      I 
Sbjct: 736  HEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSEWDCTLEPDEHGTLAIR 795

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  ++G+    AR + +A A +P+  +ED C R     L+ R    L  AGAL     
Sbjct: 796  MGLRLVRGLAEADARRLQQARAQRPWRDVEDLCLRA---GLDSRARARLADAGALRALAS 852

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R Q    +  +                 +FA  +      + L              + 
Sbjct: 853  DRHQARWQVAAV------------QPQLPLFADVQALPEVAVALP---APTVDEDLVADY 897

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            + LG     HPL + +  LR +G +   E      G+ I +A +VV +Q+ +T  G  + 
Sbjct: 898  QTLGTTLGPHPLALLRSRLRALGCRSSSELQGVEHGDTIAVAGLVVGRQRPQTASG--VT 955

Query: 1017 WVTFSEPAKEYEANFF 1032
            +VT  +         +
Sbjct: 956  FVTLEDEHGMVNVVVW 971


>gi|91204889|ref|YP_537244.1| DNA polymerase III subunit alpha [Rickettsia bellii RML369-C]
 gi|122426107|sp|Q1RKF9|DPO3A_RICBR RecName: Full=DNA polymerase III subunit alpha
 gi|91068433|gb|ABE04155.1| DNA polymerase III alpha chain [Rickettsia bellii RML369-C]
          Length = 1172

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 412/1069 (38%), Positives = 605/1069 (56%), Gaps = 69/1069 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+  SSYS L  AL+   I++  ++ +  AI +TD  NLF +LEF+  A   G+QPI
Sbjct: 5    FIHLRTQSSYSFLASALTTEKIVELASSYKMAAICLTDKENLFGSLEFALYAIKKGLQPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L+I  +  +               I+L+     GY+ L++L S  +  +  K    
Sbjct: 65   HGVILNIQYETGV------------FAEILLIAKDETGYKNLLKLSSITFTTNDRKICNH 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L+E   EGLI L   + G I +    N  + AE      +++FGDR Y  + RH 
Sbjct: 113  ITFEDLKE-HQEGLITLCCYTEGVIGKCLLANKEEQAEMFARNLQEIFGDRFYFEIMRHD 171

Query: 191  GYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              +    E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  V+
Sbjct: 172  LPEEQLIEDNYIKIASKLNIPLVATNKVLFSKKSMHDAHDVLLCISAGVTKEYPDRKTVS 231

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + Y K+  EM+ +F+DLP A+ENTV + +RC F     A      +          E +
Sbjct: 232  ENCYFKSAKEMIELFADLPSAIENTVNLTQRCYF-----AAHTNPPMLPNFATKDISETD 286

Query: 310  ELRNKAVAG-------LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             +R +A  G                  +     +Y  RLD+ELN+I  M F+GYFLIV+D
Sbjct: 287  LIRKEAKDGLLARLDTKFKSEHISIEHQESIKTEYFARLDYELNIICSMNFAGYFLIVSD 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNPDR+SMPDFDIDF
Sbjct: 347  FIKWSKKQGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPDRISMPDFDIDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P  
Sbjct: 407  CQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVPFS 466

Query: 483  PAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAAGI 532
              +PV+  QAI +      A   +           +  +L+ S  LEGL+RH+STHAAGI
Sbjct: 467  AINPVTLEQAIREVPELANAAKGNGLYNLEGELELIKLVLDTSLILEGLHRHSSTHAAGI 526

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            VI    L  +VP+Y+D  SD+ V  ++MK+ E AGLIKFDFLGL+TLT++      L ++
Sbjct: 527  VIAGTDLVDIVPVYKDANSDMLVVGYSMKYCELAGLIKFDFLGLQTLTVITDCKKLLKEQ 586

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +++D + + FDD +TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LYRP
Sbjct: 587  NIEIDFNDMTFDDEKTYQMLCKGKGVGVFQFESVGMKDALRRLKPDSIHDLIALGALYRP 646

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  AD+
Sbjct: 647  GPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAADL 706

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKKIK EM++Q+E F+ GA  N IS+  A +IF  +AKFA YGFNK+HAAAY VI
Sbjct: 707  LRRAMGKKIKAEMEQQEEIFVKGAIANNISEAQAKSIFATVAKFAGYGFNKAHAAAYGVI 766

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG- 831
            SYQTA++K +YP EF+ A + LE++N +KI  F Q+A+  NI+I+ P++N     F V  
Sbjct: 767  SYQTAYLKANYPAEFVVACLNLELNNHDKINLFLQEAKDNNIKIIAPNINISGGYFSVKS 826

Query: 832  -------------------------DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865
                                     D+ I ++L AIKGV     + + +   A   F S+
Sbjct: 827  VIPRLDCGIHGDQLKDTAVKPQYDIDSSIIFALGAIKGVTPNFGKLVTDERNARGAFKSI 886

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DF  R+  K +N ++LE+L+ AG  D    +R+QL  S+  +  Y+    + + +   +
Sbjct: 887  VDFIERLPPKAINSKLLENLIKAGCFDELHDNRLQLFLSISKLLAYSVSYHEEQASNQFS 946

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            +    K +   K  L      + +     E   +G + S HPL  YK I  ++ I    +
Sbjct: 947  L---IKVSSLSKEILVSSDYADKNTLAFYEFEAMGLFISNHPLTEYKEIFNRLNILSSAD 1003

Query: 986  S-VATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   G   + +A ++  K  + + +G R   +  S+P   +E + F
Sbjct: 1004 LHNNLPDGTNRVMIAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSIF 1051


>gi|108798154|ref|YP_638351.1| error-prone DNA polymerase [Mycobacterium sp. MCS]
 gi|119867250|ref|YP_937202.1| error-prone DNA polymerase [Mycobacterium sp. KMS]
 gi|108768573|gb|ABG07295.1| error-prone DNA polymerase, DnaE-like protein [Mycobacterium sp. MCS]
 gi|119693339|gb|ABL90412.1| error-prone DNA polymerase, DnaE-like protein [Mycobacterium sp. KMS]
          Length = 1099

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 281/1034 (27%), Positives = 479/1034 (46%), Gaps = 57/1034 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS+YS L+GA +   ++++ A     AIA+TD + L+  + F++ A    ++ +
Sbjct: 61   YAELHAHSAYSFLDGAGTPEELVEEAARLDLRAIALTDHDGLYGVVRFAEAARELDMRTV 120

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L + M      + + + P P  P +++L    EGY+RL   +++ +L    K   R
Sbjct: 121  FGAELSLGMGAR---SARNEVPDPPGPHLLVLARGPEGYRRLSREIAKAHLAGGEKGKPR 177

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 L E       +LTG   G + +A        AEK L      FG DR+ V L  H
Sbjct: 178  YDYDTLTEAAGGHWHILTGCRKGHVRQALSEGGPAAAEKALADLVDRFGRDRVSVELTHH 237

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVVSQKDRPR 247
                D  R + + +LA    L +VAT  + F           + A+    ++        
Sbjct: 238  GHPLDDERNAALAELAPRFGLTVVATTAAHFAEPSRGRLAMAMGAIRARHSIDEAAGYLA 297

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 +L++  EM  +F+  P+ +    ++  +C+F L + AP LP F           E
Sbjct: 298  PLGGSHLRSGEEMARLFAHCPQVVTAAADLGEQCAFGLALIAPKLPPFDVPAG----HTE 353

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++ LR+  + G   R      A     Q Y  +++ EL VI ++ F GYFL+V D  ++ 
Sbjct: 354  DSWLRHLVMLGARNRYGPPERA----PQAY-AQIEHELRVIEKLSFPGYFLVVHDITRFC 408

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+N I    GRGS A S   YAL +T++DP+   LLFERFL+P R   PD DID   D R
Sbjct: 409  KENGIL-AQGRGSAANSAVCYALGVTNVDPVANELLFERFLSPARDGPPDIDIDIESDLR 467

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            ++ I+YV ++YG +  AQ+    + + ++A+RD+ RAL     Q D   K +        
Sbjct: 468  EQAIQYVYDRYGRDYAAQVANVITYRGRSAIRDMARALGFSQGQQDAWSKQLSKWNG--- 524

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                +AD                +++++ ++  L RH   H+ G+VI DRP++ + P+  
Sbjct: 525  ----LADSPDIEGIPEP------VVDLALQISNLPRHMGIHSGGMVICDRPIADVCPVEW 574

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDH 606
               ++  V Q++       GL+KFD LGL  L+ L   +D + +     VDL+ +   + 
Sbjct: 575  ARMANRSVLQWDKDDCAAIGLVKFDMLGLGMLSALHYCIDLVREHKGLDVDLAKLDLSEP 634

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664
              Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y  R
Sbjct: 635  AVYEMLQRADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHPYIKR 694

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723
            +NG+E +   HP +   L++T GV ++QEQ+MQ+A   +G++ +EAD LRRAM  K+  E
Sbjct: 695  RNGEEPVTYDHPSMANALRKTLGVPLFQEQLMQLAVDCAGFTAAEADQLRRAMGSKRSTE 754

Query: 724  EMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            +M + + RF  G  + +GI+  +A  I++ L  FA++GF +SH+ ++A + + ++W K H
Sbjct: 755  KMRRLRGRFYDGMRQRHGITGEVADRIYDKLEAFANFGFPESHSLSFASLVFYSSWFKLH 814

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIYYSLA 840
            +P  F AA +  +       +    DAR+  + +  P VN       +      +   L 
Sbjct: 815  HPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAYATLESAGTEVRLGLG 874

Query: 841  AIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            A++ +G   A  I+E    + PF+SL D   RV   +L+    E+L  AGAL CFG +R 
Sbjct: 875  AVRHIGDDLAERIVEERKANGPFESLLDLTGRV---QLSVPQTEALATAGALGCFGVTRR 931

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            + L +       A     +R     +              +      +       +    
Sbjct: 932  EGLWA----AGAAAAERPDRLPGVGS-----------AGQVPSLPGMSKLELAAADVWAT 976

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G     +P    +  L  MG+      +    G  + +A  V  +Q+  T +G  + ++ 
Sbjct: 977  GVSPDSYPTQFLRENLDAMGVVPAGRLLDVPDGTRVLVAGAVTHRQRPATAQG--VTFLN 1034

Query: 1020 FSEPAKEYEANFFP 1033
              +          P
Sbjct: 1035 LEDETGMVNVVCSP 1048


>gi|325675561|ref|ZP_08155245.1| error-prone DNA polymerase [Rhodococcus equi ATCC 33707]
 gi|325553532|gb|EGD23210.1| error-prone DNA polymerase [Rhodococcus equi ATCC 33707]
          Length = 1115

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 285/1032 (27%), Positives = 477/1032 (46%), Gaps = 61/1032 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS++S L+GA     ++++       AIA+TD + ++  + F++ A   G++ +
Sbjct: 81   YAELHTHSAFSFLDGASPPEELVEEAVRLGLDAIALTDHDGMYGVVRFAEAAKELGMRTV 140

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +D       T +  TP P    +++L    EGY+RL   ++  +L    K   R
Sbjct: 141  FGAELSLD------ATPRTGTPDPGGTHLLVLARGQEGYRRLSRQIAAAHLAGGEKGKPR 194

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 L E       +LTG   G +  A        AE  L      FG DR+ V L   
Sbjct: 195  YDYDALTEAAGGHWQILTGCRKGHVRSALAAGGPDAAEAALRDLVDRFGADRVTVELTHR 254

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
                D    + + ++A   +LP++A+  + F           + AV     + +      
Sbjct: 255  GLPEDDEINAALAEIATRQQLPVIASTAAHFAGPHRRRLAMAMAAVRARQSLDEAAGWLA 314

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T   +L++ +EMV +F+  PEA+     +   C+F L++ AP LP F   +       E
Sbjct: 315  PTGGAHLRSGAEMVRLFAQCPEAVAGAAALGLECAFDLRLIAPKLPPFDVPDG----HTE 370

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR   + G   R    +     +AQ     ++ EL++I R+ F GYFL+V D + + 
Sbjct: 371  ASWLRELTMQGARRRYGPPSANPAAYAQ-----IEHELDIIERLTFPGYFLVVHDIVSFC 425

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N+I    GRGS A S   YA+ IT++DP+R  LLFERFL+P+R   PD D+D   DRR
Sbjct: 426  KGNDIL-CQGRGSAANSAVCYAIGITNVDPVRNKLLFERFLSPERDGPPDIDVDIESDRR 484

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +E I++V  KYG E  AQ+    + + K+++RD+ RAL     Q D   K +        
Sbjct: 485  EEAIQHVYTKYGREYAAQVANVITYRGKSSVRDMARALGFSQGQQDAWSKQVSRWTGVGQ 544

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                                   +LE++ ++EG  RH   H+ G+VI DRP++ + P+  
Sbjct: 545  E--------------TDTDIPPAVLELAAQIEGFPRHLGIHSGGMVICDRPIADVCPVEW 590

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                +  V Q++       GL+KFD LGL  L+ L   +D +A+   ++VDL+ +   + 
Sbjct: 591  ARMENRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHYMIDLVAEHKGIEVDLAQLDLSEQ 650

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664
              Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y  R
Sbjct: 651  AVYEMLQRADSVGVFQVESRAQMATLPRLKPRNFYDLVVEVALIRPGPIQGGSVHPYIRR 710

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723
            +NG+E +V  HP ++  L  T GV ++QEQ+MQ+A   +G+S +EAD LRRAM  K+  E
Sbjct: 711  RNGREPVVYDHPCLEKALARTLGVPLFQEQLMQMAVDAAGFSAAEADQLRRAMGSKRSPE 770

Query: 724  EMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            +M++ + R   G  + +GI+  +A  I+E L  FA++GF +SH+ ++A + + ++W K H
Sbjct: 771  KMERLRGRLYDGMRELHGITGDVADRIYEKLHAFANFGFPESHSQSFASLVFYSSWFKLH 830

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIYYSLA 840
            +P  F A  +  +       +    DAR+  +++    VN       +      +   L 
Sbjct: 831  HPAAFCAGLLRAQPMGFYSPQSLVADARRHGVRVHGADVNASLAHATLEACGTEVRLGLG 890

Query: 841  AIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             ++G+G   A  I+ A A D PF S+ D   R+D   L    +ESL  AGAL CFG SR 
Sbjct: 891  EVRGIGDALADRIVAARAEDGPFRSILDLTGRID---LTTGQVESLATAGALSCFGLSRR 947

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            + L                   + + +      T +           +       +    
Sbjct: 948  EALW----------AAGAAAGERPDRLPGMGASTRA-----PALPGMSDLELAAADVWAT 992

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G     +P +  +P L  +G+      +    G+ + +   V  +Q+  T  G  + +V 
Sbjct: 993  GVSPDSYPTEFLRPQLDALGVLPASRLLDVPDGDRVLVGGAVTHRQRPATAAG--VTFVN 1050

Query: 1020 FSEPAKEYEANF 1031
              +         
Sbjct: 1051 LEDETGMVNVVC 1062


>gi|297529096|ref|YP_003670371.1| DNA polymerase III subunit alpha [Geobacillus sp. C56-T3]
 gi|297252348|gb|ADI25794.1| DNA polymerase III, alpha subunit [Geobacillus sp. C56-T3]
          Length = 1092

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 385/1025 (37%), Positives = 574/1025 (56%), Gaps = 51/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL V S YSL + A ++  +  +       A+A+TD N L+ A+ F ++    GI+PI
Sbjct: 2    FVHLHVLSGYSLFQSAAAVEALAARAKQLGYQALALTDRNVLYGAIPFYRECKQNGIRPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG   D+ +                   +VLL +  EGY+ L+E+ + M + +    +  
Sbjct: 62   IGVTADVAL------------SGEEAFPLVLLAANEEGYRHLLEISTMMQMGE----TKH 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +  + L  + + G+I +T GS G ++        + A++ L  + +LF  RLYV +QR  
Sbjct: 106  MEEAALVRL-SGGIIAITPGSEGRVESLVAAGEWERAKEALGRYHQLFPGRLYVAVQRGE 164

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                  E+ ++QLA    +P+VATN+  ++   D  A   L A+    +++         
Sbjct: 165  QTRAPYEAGLLQLAEETGVPIVATNDVRYVERSDAVAWRCLQAIGRGALLAD---IEDDN 221

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              YL    EM   F+DLPEALEN++ IA +C   ++     LP +   + +      ++ 
Sbjct: 222  GRYLAGPEEMARRFADLPEALENSLAIADQCELQIEFGGWRLPAYPVPDGE----TADSY 277

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  +  GL  R+           + Y +RL  EL+VI  + FS YFLIVAD + +A++ 
Sbjct: 278  LRRLSEQGLARRVP-------SADERYWRRLSHELDVIQSLHFSDYFLIVADVLAYARRR 330

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I  GPGRGS AGS+ AYAL+ITD+DP+++ LLFERFLNP+R S+PD D+DF   RR+EV
Sbjct: 331  GILTGPGRGSAAGSLVAYALSITDVDPIKYGLLFERFLNPERASVPDIDLDFPDGRREEV 390

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV +KYG +RVAQIITFG+  AKAALR+  +AL +P  + +++  L+P+  +  +   
Sbjct: 391  IRYVADKYGRDRVAQIITFGTFGAKAALRETAKALGVPGREAEQVAALLPSKQSVTLRQW 450

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
              A+ + FR A  A P     L ++QKLEGL RH S HAAG++I   PL + VP+     
Sbjct: 451  H-AESAAFRRAVAAVPQGREWLAVAQKLEGLPRHTSIHAAGVIISPEPLVRFVPLQ-PSH 508

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETY 609
             + P+TQ+ M  +E  GL+K DFLGL+TLTL+++ +     Q G   D+  +P +D +TY
Sbjct: 509  GEWPLTQYAMGALEALGLLKIDFLGLRTLTLIEQIVRLIERQTGKPFDIRTLPLNDEKTY 568

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T GIFQLESSGM++ L  ++P   ED++A+ +LYRPGP+  I VY  RK G+E
Sbjct: 569  ALLGAGDTNGIFQLESSGMKRILAELRPSEFEDVVAVNALYRPGPMQMIPVYIRRKRGEE 628

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +  IHP + P+L  T GV+IYQEQ+MQIA  L+G+SL +ADVLRRA+ KK K  + KQ+
Sbjct: 629  PVEYIHPDLAPILAPTYGVLIYQEQIMQIAARLAGFSLGQADVLRRAVAKKEKALLAKQR 688

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F++G + NG  K IA  +++ +A+FADYGFN+SHA +YA++SY  A+MK HYP+ F A
Sbjct: 689  QAFVAGCAANGYPKEIAEELYQHIARFADYGFNRSHAVSYALLSYAMAYMKAHYPLCFYA 748

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +T    + EK   +  +A +  I ++ PSVN       V  + I   LA +K VG + 
Sbjct: 749  VMLTNASGDREKAAVYYWEAARKGINVLLPSVNKSGFRSSVEGSAIRLGLAMVKQVG-SA 807

Query: 850  ARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            A+ I+E    + PF    DF +R+  K L R  LE+L+  GA D FG  R  LL S+D  
Sbjct: 808  AKLIVEERKANGPFADFFDFAARLLPKGLGRPALEALISVGAFDEFGADRASLLASIDIA 867

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             ++AQWV+           A E G  S K           S R   E   LGF  + HP 
Sbjct: 868  IEHAQWVQ-----------ALEAGGLSLKPKYAAAHSWPLSERRRREAEFLGFAVTPHPA 916

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             V +P+L+  G     +      G +  +   VV  ++ +T++G  + + T  + + E E
Sbjct: 917  AVCRPLLQAAGAVCVADVQ----GPSTVVGGAVVRIRKTRTKQGEEMAFFTVGDESGELE 972

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 973  AVAFP 977


>gi|126433813|ref|YP_001069504.1| error-prone DNA polymerase [Mycobacterium sp. JLS]
 gi|126233613|gb|ABN97013.1| error-prone DNA polymerase, DnaE-like protein [Mycobacterium sp. JLS]
          Length = 1099

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 281/1034 (27%), Positives = 479/1034 (46%), Gaps = 57/1034 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS+YS L+GA +   ++++ A     AIA+TD + L+  + F++ A    ++ +
Sbjct: 61   YAELHAHSAYSFLDGAGTPEELVEEAARLDLRAIALTDHDGLYGVVRFAEAARELDMRTV 120

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L + M      + + + P P  P +++L    EGY+RL   +++ +L    K   R
Sbjct: 121  FGAELSLGMGAR---SARNEVPDPPGPHLLVLARGPEGYRRLSREIAKAHLAGGEKGKPR 177

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 L E       +LTG   G + +A        AEK L      FG DR+ V L  H
Sbjct: 178  YDYDALTEAAGGHWHILTGCRKGHVRQALSEGGPAAAEKALADLVDRFGRDRVSVELTHH 237

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVVSQKDRPR 247
                D  R + + +LA    L +VAT  + F           + A+    ++        
Sbjct: 238  GHPLDDERNAALAELAPRFGLTVVATTAAHFAEPSRGRLAMAMGAIRARHSIDEAAGYLA 297

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 +L++  EM  +F+  P+ +    ++  +C+F L + AP LP F           E
Sbjct: 298  PLGGSHLRSGEEMARLFAHCPQVVTAAADLGEQCAFGLALIAPKLPPFDVPAG----HTE 353

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++ LR+  + G   R      A     Q Y  +++ EL VI ++ F GYFL+V D  ++ 
Sbjct: 354  DSWLRHLVMLGARNRYGPPERA----PQAY-AQIEHELRVIEKLSFPGYFLVVHDITRFC 408

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+N I    GRGS A S   YAL +T++DP+   LLFERFL+P R   PD DID   D R
Sbjct: 409  KENGIL-AQGRGSAANSAVCYALGVTNVDPVANELLFERFLSPARDGPPDIDIDIESDLR 467

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            ++ I+YV ++YG +  AQ+    + + ++A+RD+ RAL     Q D   K +        
Sbjct: 468  EQAIQYVYDRYGRDYAAQVANVITYRGRSAIRDMARALGFSQGQQDAWSKQLSKWNG--- 524

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                +AD                +++++ ++  L RH   H+ G+VI DRP++ + P+  
Sbjct: 525  ----LADSPDIEGIPEP------VVDLALQISNLPRHMGIHSGGMVICDRPIADVCPVEW 574

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDH 606
               ++  V Q++       GL+KFD LGL  L+ L   +D + +     VDL+ +   + 
Sbjct: 575  ARMANRSVLQWDKDDCAAIGLVKFDMLGLGMLSALHYCIDLVREHKGLDVDLAKLDLSEP 634

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664
              Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y  R
Sbjct: 635  AVYEMLQRADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHPYIKR 694

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723
            +NG+E +   HP +   L++T GV ++QEQ+MQ+A   +G++ +EAD LRRAM  K+  E
Sbjct: 695  RNGEEPVTYDHPSMANALRKTLGVPLFQEQLMQLAVDCAGFTAAEADQLRRAMGSKRSTE 754

Query: 724  EMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            +M + + RF  G  + +GI+  +A  I++ L  FA++GF +SH+ ++A + + ++W K H
Sbjct: 755  KMRRLRGRFYDGMRQRHGITGEVADRIYDKLEAFANFGFPESHSLSFASLVFYSSWFKLH 814

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIYYSLA 840
            +P  F AA +  +       +    DAR+  + +  P VN       +      +   L 
Sbjct: 815  HPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAYATLESAGTEVRLGLG 874

Query: 841  AIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            A++ +G   A  I+E    + PF+SL D   RV   +L+    E+L  AGAL CFG +R 
Sbjct: 875  AVRHIGDDLAERIVEERKANGPFESLLDLTGRV---QLSVPQTEALATAGALGCFGVTRR 931

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            + L +       A     +R     +              +      +       +    
Sbjct: 932  EGLWA----AGAAAAERPDRLPGVGS-----------AGQVPSLPGMSKLELAAADVWAT 976

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G     +P    +  L  MG+      +    G  + +A  V  +Q+  T +G  + ++ 
Sbjct: 977  GVSPDSYPTQFLRENLDAMGVIPAGRLLDVPDGTRVLVAGAVTHRQRPATAQG--VTFLN 1034

Query: 1020 FSEPAKEYEANFFP 1033
              +          P
Sbjct: 1035 LEDETGMVNVVCSP 1048


>gi|157827786|ref|YP_001496850.1| DNA polymerase III subunit alpha [Rickettsia bellii OSU 85-389]
 gi|157803090|gb|ABV79813.1| DNA polymerase III subunit alpha [Rickettsia bellii OSU 85-389]
          Length = 1172

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 412/1069 (38%), Positives = 605/1069 (56%), Gaps = 69/1069 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL+  SSYS L  AL+   I++  ++ +  AI +TD  NLF +LEF+  A   G+QPI
Sbjct: 5    FIHLRTQSSYSFLASALTTEKIVELASSYKMAAICLTDKENLFGSLEFALYAIKKGLQPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L+I  +  +               I+L+     GY+ L++L S  +  +  K    
Sbjct: 65   HGVILNIQYETGV------------FAEILLIAKDETGYKNLLKLSSITFTTNDRKICNH 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L+E   EGLI L   + G I +    N  + AE      +++FGDR Y  + RH 
Sbjct: 113  ITFEDLKE-HQEGLITLCCYTEGVIGKCLLANKEEQAEMFARNLQEIFGDRFYFEIMRHD 171

Query: 191  GYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              +    E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  V+
Sbjct: 172  LPEEQLIEDNYIKIASKLNIPLVATNKVLFSKKSMHDAHDVLLCISAGVTKEYPDRKTVS 231

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + Y K+  EM+ +F+DLP A+ENTV + +RC F     A      +          E +
Sbjct: 232  ENCYFKSAKEMIELFADLPSAIENTVNLTQRCYF-----AAHTNPPMLPNFATKDISETD 286

Query: 310  ELRNKAVAG-------LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             +R +A  G                  +     +Y  RLD+ELN+I  M F+GYFLIV+D
Sbjct: 287  LIRKEAKDGLLARLDTKFKSEHISIEHQESIKTEYFARLDYELNIICSMNFAGYFLIVSD 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            FI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNPDR+SMPDFDIDF
Sbjct: 347  FIKWSKKQGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPDRISMPDFDIDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            CQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P  
Sbjct: 407  CQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVPFS 466

Query: 483  PAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAAGI 532
              +PV+  QAI +      A   +           +  +L+ S  LEGL+RH+STHAAGI
Sbjct: 467  AINPVTLEQAIREVPELANAAKGNGLYNLEGELELIKLVLDTSLILEGLHRHSSTHAAGI 526

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            VI    L  +VP+Y+D  SD+ V  ++MK+ E AGLIKFDFLGL+TLT++      L ++
Sbjct: 527  VIAGTDLVDIVPVYKDANSDMLVVGYSMKYCELAGLIKFDFLGLQTLTVITDCKKLLKEQ 586

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +++D + + FDD +TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LYRP
Sbjct: 587  NIEIDFNDMTFDDEKTYQMLCKGKGVGVFQFESVGMKDALRRLKPDSIHDLIALGALYRP 646

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            GP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  AD+
Sbjct: 647  GPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAADL 706

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKKIK EM++Q+E F+ GA  N IS+  A +IF  +AKFA YGFNK+HAAAY VI
Sbjct: 707  LRRAMGKKIKAEMEQQEEIFVKGAIANNISEAQAKSIFVTVAKFAGYGFNKAHAAAYGVI 766

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG- 831
            SYQTA++K +YP EF+ A + LE++N +KI  F Q+A+  NI+I+ P++N     F V  
Sbjct: 767  SYQTAYLKANYPAEFVVACLNLELNNHDKINLFLQEAKDNNIKIIAPNINISGGYFSVKS 826

Query: 832  -------------------------DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865
                                     D+ I ++L AIKGV     + + +   A   F S+
Sbjct: 827  VIPQLDRSIHGDQLKDTAVKPQYDIDSSIIFALGAIKGVTPNFGKLVTDERNARGAFKSI 886

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DF  R+  K +N ++LE+L+ AG  D    +R+QL  S+  +  Y+    + + +   +
Sbjct: 887  VDFIERLPPKAINSKLLENLIKAGCFDELHDNRLQLFLSISKLLAYSVSYHEEQASNQFS 946

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            +    K +   K  L      + +     E   +G + S HPL  YK I  ++ I    +
Sbjct: 947  L---IKVSSLSKEILVSSDYADKNTLAFYEFEAMGLFISNHPLTEYKEIFNRLNILSSAD 1003

Query: 986  S-VATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   G   + +A ++  K  + + +G R   +  S+P   +E + F
Sbjct: 1004 LHNNLPDGTNRVMIAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSIF 1051


>gi|307571155|emb|CAR84334.1| dnaE [Listeria monocytogenes L99]
          Length = 1095

 Score =  632 bits (1629), Expect = e-178,   Method: Composition-based stats.
 Identities = 355/1017 (34%), Positives = 565/1017 (55%), Gaps = 41/1017 (4%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +L    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PIIG  + I    
Sbjct: 1    MLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPIIGMTVTI---- 56

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  QG         ++L+  +  GY  L+++ S +   ++G     +  SWL+   +
Sbjct: 57   ------QGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---PELPQSWLRAYSS 107

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYDRYRESQV 200
              LI ++ G+ G I+R     +   A +       +FG + +Y++ Q+         +++
Sbjct: 108  -NLIAISPGAKGEIERLLMEENRDGALEAYANLVDIFGKESVYLSAQKENP---RLFAKI 163

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
               +    +P+VAT N  +L  +D +A +VL A+  +  V     P   P+++       
Sbjct: 164  ETFSAEENVPVVATKNVQYLEPKDAQAKEVLTAIRDNRTVDWTTLPLAGPNYFTSQEEME 223

Query: 261  VSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
                +D   +A   T E+A RC   + +   +LPRF   E     +   + LR  A  GL
Sbjct: 224  RDWQTDFEKQACFETGELADRCHVEIALDQHLLPRFPLTEG----QNAPDVLRQTAYDGL 279

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
            + R   GA        +Y++RL++EL VI  M F+ YFLIV D I+++++  +  GPGRG
Sbjct: 280  KERDLLGA--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSREAGVLTGPGRG 331

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            S AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RRDEVI YV +KYG
Sbjct: 332  SAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRDEVISYVVSKYG 391

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
               VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     +  +A+ +  R  
Sbjct: 392  EAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL-QKALQESPRLE 450

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
                +    + + E++ +LEGL RH STHAAGIVI D+PL + V +      D  +TQF 
Sbjct: 451  NHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLGS-GDARLTQFA 509

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
            M  +EK GL+K DFLGL+ L+LL + L      R   + L+ I  +D +T  L  T  T 
Sbjct: 510  MGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNRETPLTLADISLEDKKTLKLFQTGDTT 569

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK+GKEKI   HP +
Sbjct: 570  GVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHGKEKIQYPHPDL 629

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
             P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA  
Sbjct: 630  APILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKS 689

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             G S   A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N
Sbjct: 690  KGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGN 749

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEAS 857
             +KI ++  +A+ + I ++ PS+N     F+V +   I YS   I+ V T     I+   
Sbjct: 750  DDKISQYITEAKNYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVPTKFILEIINER 809

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
               PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + +
Sbjct: 810  KKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGE 869

Query: 918  NRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
            +  +K  N+FA +       K    K +  +   + E E+   G Y S HP+  Y+  L+
Sbjct: 870  D--SKGMNLFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQ 927

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + I       +   G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 928  NLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 981


>gi|218893372|ref|YP_002442241.1| error-prone DNA polymerase [Pseudomonas aeruginosa LESB58]
 gi|218773600|emb|CAW29414.1| probable DNA polymerase alpha chain [Pseudomonas aeruginosa LESB58]
          Length = 1031

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 281/1042 (26%), Positives = 457/1042 (43%), Gaps = 78/1042 (7%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +  +L +  ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q
Sbjct: 1    MAAWLVRMSAYAELHCLSNFSFQRGASSAAELFARAARLGYRALAITDECSLAGIVRAWQ 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A    +Q IIG ++ ++                  P +VLL    EGYQ L  L++R  
Sbjct: 61   AAREHQVQLIIGSEIRLE----------------QGPKLVLLAEDLEGYQNLCRLITRGR 104

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 K   R+    LQ+     L +      G               ++    ++ F  
Sbjct: 105  -RQADKGHYRLLREDLQQPLAGLLAIWLPNDHGD--------------EQAAWLRERFPQ 149

Query: 181  RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            RL++ ++ HRG  D  R  +++ LA    LP VA  +    +       D + A+ +   
Sbjct: 150  RLWLGVELHRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLP 209

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            VS+       P+     R+            L  T++IA RC F L+      PR +   
Sbjct: 210  VSEAGAYLF-PNGERHLRTLEALQGIYPQALLAETLKIAERCRFDLEQLKYQYPRELVPA 268

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              D      + LR+    G+  R   GA A        R++++ EL +IA + +  YFL 
Sbjct: 269  GHD----PASWLRHLTEQGIARRWPNGASA------KVRKQIERELELIAELGYESYFLT 318

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D + +A+   I    GRGS A S   +AL IT++DP R +LLFERFL+ +R   PD D
Sbjct: 319  VQDIVAFARGREIL-CQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPDID 377

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  +RR+EVI+YV  +YG +R A      +     A+RDV +AL +P  QVD L    
Sbjct: 378  VDFEHERREEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLANCC 437

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                    S + + +           P + R+L ++ +L G  RH S H  G VI ++PL
Sbjct: 438  GRWSDQAPSAERLEE----AGFDPQSPILRRVLALTDELIGFPRHLSQHPGGFVISEQPL 493

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
              LVP+     ++  V Q++   ++  GL+K D L L  L+ L++S D +        LS
Sbjct: 494  DTLVPVENASMAERTVIQWDKDDLDAVGLLKVDILALGMLSALRRSFDLIHALRGGKRLS 553

Query: 600  LIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +      D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  
Sbjct: 554  IASIPSEDPATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPIQG 613

Query: 658  IVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V+    R+NG+E +      ++ + + T GV ++QEQVM++A + + Y+  EAD LRR
Sbjct: 614  DMVHPYLRRRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEADELRR 673

Query: 716  AMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +M    +    +  +ER   G    G     A  IFE +  F  YGF +SHAA++A+++Y
Sbjct: 674  SMAAWKRHGGLEHHRERLTRGMLAKGYEADFAARIFEQIKGFGSYGFPESHAASFALLTY 733

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831
             ++W+K H P  F  A +           +  QDAR+  +Q  P  V     D  +    
Sbjct: 734  ASSWLKRHEPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCSLESFG 793

Query: 832  --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                 I   L  I+G     AR I +    +PF  + D   R    +L+ R LE L  AG
Sbjct: 794  QAQPAIRLGLRMIRGFREEDARRIEQVREAEPFLDVHDLGRRA---RLDARALELLADAG 850

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            AL      R +   ++ ++                 +FA         ++L    + +  
Sbjct: 851  ALRGLAGHRHKARWAVASV------------EPQLPLFAEGTAIEESTVSLP---LPSRG 895

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                ++  +LG     HPL + +  L+    +   E      G  IR+A +VV +Q+ +T
Sbjct: 896  EELLSDYALLGTTLGPHPLKLLRGQLKARRCRDSRELAKLGHGRPIRVAGLVVGRQRPQT 955

Query: 1010 RKGSRIGWVTFSEPAKEYEANF 1031
              G  I ++T  +         
Sbjct: 956  ASG--ITFITLEDEFGMVNVVV 975


>gi|254244906|ref|ZP_04938228.1| hypothetical protein PA2G_05781 [Pseudomonas aeruginosa 2192]
 gi|126198284|gb|EAZ62347.1| hypothetical protein PA2G_05781 [Pseudomonas aeruginosa 2192]
          Length = 1031

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 281/1042 (26%), Positives = 457/1042 (43%), Gaps = 78/1042 (7%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +  +L +  ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q
Sbjct: 1    MAAWLVRMSAYAELHCLSNFSFQRGASSAAELFARAARLGYRALAITDECSLAGIVRAWQ 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A    +Q IIG ++ ++                  P +VLL    EGYQ L  L++R  
Sbjct: 61   AAREHQVQLIIGSEIRLE----------------QGPKLVLLAEDLEGYQNLCRLITRGR 104

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 K   R+    LQ+     L +      G               ++    ++ F  
Sbjct: 105  -RQADKGHYRLLREDLQQPLAGLLAIWLPNDHGD--------------EQAAWLRERFPQ 149

Query: 181  RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            RL++ ++ HRG  D  R  +++ LA    LP VA  +    +       D + A+ +   
Sbjct: 150  RLWLGVELHRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLP 209

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            VS+       P+     R+            L  T++IA RC F L+      PR +   
Sbjct: 210  VSEAGAYLF-PNGERHLRTLEALQGIYPQALLAETLKIAERCRFDLEQLKYQYPRELVPA 268

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              D      + LR+    G+  R   GA A        R++++ EL +IA + +  YFL 
Sbjct: 269  GHD----PASWLRHLTEQGIARRWPNGASA------KVRKQIERELELIAELGYESYFLT 318

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D + +A+   I    GRGS A S   +AL IT++DP R +LLFERFL+ +R   PD D
Sbjct: 319  VQDIVAFARGRKIL-CQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPDID 377

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  +RR+EVI+YV  +YG +R A      +     A+RDV +AL +P  QVD L    
Sbjct: 378  VDFEHERREEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLANCC 437

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                    S + + +           P + R+L ++ +L G  RH S H  G VI ++PL
Sbjct: 438  GRWSDQAPSAERLEE----AGFDPQSPILRRVLALTDELIGFPRHLSQHPGGFVISEQPL 493

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
              LVP+     ++  V Q++   ++  GL+K D L L  L+ L++S D +        LS
Sbjct: 494  DTLVPVENASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRGGKRLS 553

Query: 600  LIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +      D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  
Sbjct: 554  IASIPSEDPATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPIQG 613

Query: 658  IVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V+    R+NG+E +      ++ + + T GV ++QEQVM++A + + Y+  EAD LRR
Sbjct: 614  DMVHPYLRRRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEADELRR 673

Query: 716  AMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +M    +    +  +ER   G    G     A  IFE +  F  YGF +SHAA++A+++Y
Sbjct: 674  SMAAWKRHGGLEHHRERLTRGMLAKGYEADFAARIFEQIKGFGSYGFPESHAASFALLTY 733

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831
             ++W+K H P  F  A +           +  QDAR+  +Q  P  V     D  +    
Sbjct: 734  ASSWLKRHEPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCSLESFG 793

Query: 832  --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                 I   L  I+G     AR I +    +PF  + D   R    +L+ R LE L  AG
Sbjct: 794  QAQPAIRLGLRMIRGFREEDARRIEQVREAEPFLDVHDLGRRA---RLDARALELLADAG 850

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            AL      R +   ++ ++                 +FA         ++L    + +  
Sbjct: 851  ALRGLAGHRHKARWAVASV------------EPQLPLFAEGTAIEESTVSLP---LPSRG 895

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                ++  +LG     HPL + +  L+    +   E      G  IR+A +VV +Q+ +T
Sbjct: 896  EELLSDYALLGTTLGPHPLKLLRGQLKARRCRDSRELAKLGHGRPIRVAGLVVGRQRPQT 955

Query: 1010 RKGSRIGWVTFSEPAKEYEANF 1031
              G  I ++T  +         
Sbjct: 956  ASG--ITFITLEDEFGMVNVVV 975


>gi|238650797|ref|YP_002916652.1| DNA polymerase III subunit alpha [Rickettsia peacockii str. Rustic]
 gi|238624895|gb|ACR47601.1| DNA polymerase III subunit alpha [Rickettsia peacockii str. Rustic]
          Length = 1181

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 405/1081 (37%), Positives = 608/1081 (56%), Gaps = 79/1081 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  +++  ++++ PAI + D  NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKKGLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I                     I+L+     GY+ L++L S  +  +  K  
Sbjct: 63   PIHGVILNIKYD------------IDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L E   EGLI L   + G + +     + + A       +++ GDR Y  + R
Sbjct: 111  DHIDFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMR 169

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +    E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  
Sbjct: 170  HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y ++  EM+ +FSDLP A++NTV +  RC F     A      +          E
Sbjct: 230  VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYF-----AAHANPPMLPNFATKDISE 284

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360
             + ++  A  GL  RLA    ++    +       +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TDLIKKDAKEGLLARLATKFKSENIALENQEALKTEYFARLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405  DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464

Query: 481  NDPAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PVS  QA+ +      A   +           +  +++ S  LEGL+RH+STHAA
Sbjct: 465  FSAVNPVSLKQALHEVPELANAAKGNGLYNLDGEAELIKLVIDTSLILEGLHRHSSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  SD+ V  ++MK+ E AGLIKFDFLGL+TLT++      L 
Sbjct: 525  GIVIAGTDLVDIVPVYKDSNSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            ++G++VD + + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIK+EM++Q+E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAA+Y 
Sbjct: 705  DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            VISYQTA++K +YP EFL A + LE++N +KI  F Q+A+   I+I+ P++N     F V
Sbjct: 765  VISYQTAYLKANYPAEFLVACLNLELNNHDKINFFLQEAKDNGIKIIAPNINISEGYFSV 824

Query: 831  G------------------------------------DNRIYYSLAAIKGVGTTTARHIM 854
                                                    I ++L AIKGV     + + 
Sbjct: 825  KFSDTVIPHSVKPVIPRLDRGIQEISKDTVVKPRYDIAGAIIFALGAIKGVTPNFGKLVT 884

Query: 855  EASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
            +       F S+ DF  R+  K +N ++LE+L+ +G  D    +R+QLL S+  +  Y+ 
Sbjct: 885  DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYST 944

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
               + + +   ++    K +      L      + +     E   +G + S HPL  Y+ 
Sbjct: 945  AYHEEQESNQFSL---IKVSSLSPTILVSSDYADKNTLAFYEFEAMGLFISNHPLTEYQE 1001

Query: 974  ILRKMGIKGYEES-VATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            I  ++ I    +       G   + LA ++  K  + + +G R   +  S+P   +E + 
Sbjct: 1002 IFSRLNILNTADLHNNLPDGTNRVNLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSI 1060

Query: 1032 F 1032
            F
Sbjct: 1061 F 1061


>gi|116048576|ref|YP_792625.1| error-prone DNA polymerase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115583797|gb|ABJ09812.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 1031

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 280/1042 (26%), Positives = 459/1042 (44%), Gaps = 78/1042 (7%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +  +L +  ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q
Sbjct: 1    MAAWLVRMSAYAELHCLSNFSFQRGASSAAELFARAARLGYRALAITDECSLAGIVRAWQ 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A    +Q I+G ++ ++                  P +VLL    EGYQ L  L++R  
Sbjct: 61   AAREHQVQLIVGSEIRLE----------------QGPKLVLLAEDLEGYQNLCRLITRGR 104

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 K   R+    LQ+             +G +      +      ++    ++ F  
Sbjct: 105  -RQADKGHYRLLREDLQQ-----------PLAGLLAIWLPNDHED---EQAAWLRERFPQ 149

Query: 181  RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            RL++ ++ HRG  D  R  +++ LA    LP VA  +    +       D + A+ +   
Sbjct: 150  RLWLGVELHRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLP 209

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            VS+       P+     R+            L  T++IA RC F L+      PR +   
Sbjct: 210  VSEAGAYLF-PNGERHLRTLEALQGIYPQALLAETLKIAERCRFDLEQLKYQYPRELVPA 268

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              D      + LR+    G+  R   GA A        R++++ EL +IA + +  YFL 
Sbjct: 269  GHD----PASWLRHLTEQGIARRWPNGASA------KVRKQIERELELIAELGYESYFLT 318

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D + +A+   I    GRGS A S   +AL IT++DP R +LLFERFL+ +R   PD D
Sbjct: 319  VQDIVAFARGREIL-CQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPDID 377

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  +RR+EVI+YV  +YG +R A      +     A+RDV +AL +P  QVD L    
Sbjct: 378  VDFEHERREEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLANCC 437

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                    S + + +           P + R+L ++ +L G  RH S H  G VI ++PL
Sbjct: 438  GRWSDQAPSAERLEE----AGFDPQSPILRRVLALTGELIGFPRHLSQHPGGFVISEQPL 493

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
              LVP+     ++  V Q++   ++  GL+K D L L  L+ L++S D +        LS
Sbjct: 494  DTLVPVENASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRGGKRLS 553

Query: 600  LIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +      D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  
Sbjct: 554  IASIPSEDPATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPIQG 613

Query: 658  IVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V+    R+NG+E +      ++ + + T GV ++QEQVM++A + + Y+  EAD LRR
Sbjct: 614  DMVHPYLRRRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEADELRR 673

Query: 716  AMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +M    +    +  +ER   G   NG     A  IFE +  F  YGF +SHAA++A+++Y
Sbjct: 674  SMAAWKRHGGLEHHRERLTRGMLANGYEADFAARIFEQIKGFGSYGFPESHAASFALLTY 733

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831
             ++W+K H P  F  A +           +  QDAR+  +Q  P  V     D  +    
Sbjct: 734  ASSWLKRHEPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCSLEPFG 793

Query: 832  --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                 I   L  I+G     AR I +    +PF  + D   R    +L+ R LE L  AG
Sbjct: 794  QAQPAIRLGLRMIRGFREEDARRIEQVREAQPFLDVHDLGRRA---RLDARALELLADAG 850

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            AL      R +   ++ ++                 +FA         ++L    + +  
Sbjct: 851  ALRGLAGHRHKARWAVASV------------EPQLPLFAEGTVIEESTVSLP---LPSRG 895

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                ++  +LG     HPL + +  L+    +   E      G  IR+A +VV +Q+ +T
Sbjct: 896  EELLSDYALLGTTLGPHPLKLLRGQLKARRCRDSRELAKLGHGRPIRVAGLVVGRQRPQT 955

Query: 1010 RKGSRIGWVTFSEPAKEYEANF 1031
              G  I ++T  +         
Sbjct: 956  ASG--ITFITLEDEFGMVNVVV 975


>gi|146282691|ref|YP_001172844.1| error-prone DNA polymerase [Pseudomonas stutzeri A1501]
 gi|145570896|gb|ABP80002.1| DNA polymerase III, alpha subunit, putative [Pseudomonas stutzeri
            A1501]
          Length = 1065

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 280/1034 (27%), Positives = 449/1034 (43%), Gaps = 79/1034 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   + ++       A+AITD  +L   +   Q +   G+  I
Sbjct: 44   YAELHCLSNFSFQRGASSARELFERAKRQGYDALAITDECSLAGIVRAWQASKDTGLPLI 103

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG ++ I+                  P +VLLV    GYQ L +L++R     + K   +
Sbjct: 104  IGSEVQIE----------------GGPKLVLLVENLTGYQALCQLITRARRRAE-KGRYQ 146

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                 L E   EGL+            A +      A+       + F +RL++ ++ HR
Sbjct: 147  ALREDLSEGSLEGLL------------AIWLPGHAGADTDGRWLLERFRERLWLGIELHR 194

Query: 191  GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
            G D      Q +  A    +P VA  +    +       D + A+ H   V++       
Sbjct: 195  GPDDALQLRQSLTQASRLGIPAVACGDVHMHARGRRALQDCMTAIRHHLPVAEAGCHLF- 253

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P+     RS            L  T+ I++RC F L       P  +     D      +
Sbjct: 254  PNGERHLRSREELAQLYPAALLSETLRISQRCHFQLDQLKYHYPHELVPPGHDTT----S 309

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR     G   R   G        +  R +++ EL +IA + +  YFL V D +++A++
Sbjct: 310  WLRKLVEDGARWRWPDG------IPEKARAQIEHELELIADLHYESYFLTVHDIVRFARE 363

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A S   + L IT++DP+R  LLFERFL+ +R   PD D+DF  DRR+E
Sbjct: 364  RGIL-CQGRGSAANSSVCFVLGITELDPVRSKLLFERFLSRERNEPPDIDVDFEHDRREE 422

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+YV  +YG  R A      S +A  ALRDV +AL +P  Q++ L              
Sbjct: 423  VIQYVFQRYGRNRAALTAVASSYRATGALRDVAKALGLPPDQINALAGCCGRWS------ 476

Query: 490  QAIADDSRFRE--ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            + I DDSR RE      +P + R+L ++  L G  RH S H  G VI ++PL  LVP+  
Sbjct: 477  EHIPDDSRLREAGFDPDNPILRRVLVLTDALIGFPRHLSQHPGGFVISEQPLDTLVPIEN 536

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
               +D  V Q++   ++  GL+K D L L  L+ +++  D +   RG +  ++ +P +D 
Sbjct: 537  ASMADRTVIQWDKDDLDAVGLLKVDVLALGMLSAIRRCFDLIEHYRGTRWTIATLPAEDK 596

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 597  PTYEMISRADTIGVFQIESRAQMAMLPRLRPKTFYDLVIQVAIVRPGPIQGDMVHPYLRR 656

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +N +E++      + P+ + T GV ++QEQVM++A + + Y+  EAD LRRAM    +  
Sbjct: 657  RNKEEEVDYPSEELKPVFERTLGVPLFQEQVMELAIVAAEYTPDEADKLRRAMAAWKRHG 716

Query: 725  M-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
              +  + R        G        IFE +  F  YGF +SHAA++A+++Y + W+K H 
Sbjct: 717  SLEPHRVRLTERMLAKGYQPDFIARIFEQIKGFGSYGFPESHAASFALLTYASCWLKRHE 776

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYYS 838
            P  F  A +           +  QDAR+  ++I P  V     D  +         I   
Sbjct: 777  PAAFACALINSWPMGFYNPDQILQDARRHRLEIRPVDVRHSGWDCSLEPSRQAQPAIRLG 836

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L  ++G     A+ I  A   +PF  + D C R +   L  R  E L  AGAL      R
Sbjct: 837  LRMVRGFREADAQRIEAARQRQPFTDIHDLCLRAE---LEPRAREQLADAGALRGLAGHR 893

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             +   ++  I                 +FA         I L    + +      N+   
Sbjct: 894  HRARWAVAGI------------EPQLPLFASLPAPEETSINLP---LPSVGEDLFNDYAT 938

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG     HPL + +  L+    +   E      G  + +A +V+ +Q+ +T  G  + +V
Sbjct: 939  LGTTLGPHPLLLLRDELKARRCRSSRELGTIEHGRPVSVAGLVIGRQRPQTASG--VIFV 996

Query: 1019 TFSEPAKEYEANFF 1032
            T  +         +
Sbjct: 997  TLEDEFGMVNVVVW 1010


>gi|327480947|gb|AEA84257.1| error-prone DNA polymerase [Pseudomonas stutzeri DSM 4166]
          Length = 1026

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 282/1034 (27%), Positives = 451/1034 (43%), Gaps = 79/1034 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   + ++       A+AITD  +L   +   Q +   G+  I
Sbjct: 5    YAELHCLSNFSFQRGASSARELFERAKRQGYDALAITDECSLAGIVRAWQASKDTGLPLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG ++ I+                  P +VLLV    GYQ L +L++R     + K   +
Sbjct: 65   IGSEVQIE----------------GGPKLVLLVENLTGYQALCQLITRARRRAE-KGRYQ 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                 L E   EGL+            A +      A+       + F +RL++ ++ HR
Sbjct: 108  ALREDLSEGSLEGLL------------AIWLPGHAGADTDGRWLLERFRERLWLGIELHR 155

Query: 191  GYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
            G D   +  Q +  A    +P VA  +    +       D + A+ H   V++       
Sbjct: 156  GPDDTLQLRQSLTQASRLGIPAVACGDVHMHARGRRALQDCMTAIRHHLPVAEAGCHLF- 214

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P+     RS            L  T+ I++RC F L       P  +     D      +
Sbjct: 215  PNGERHLRSREELAQLYPAALLSETLRISQRCHFQLDQLKYHYPHELVPPGHD----STS 270

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR     G   R   G        +  R +L+ EL +IA + +  YFL V D +++A++
Sbjct: 271  WLRKLVEDGARWRWPDG------IPEKARAQLEHELELIADLHYESYFLTVHDIVRFARE 324

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A S   + L IT++DP+R  LLFERFL+ +R   PD D+DF  DRR+E
Sbjct: 325  RGIL-CQGRGSAANSSVCFVLGITELDPVRSKLLFERFLSRERNEPPDIDVDFEHDRREE 383

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+YV  +YG  R A      S +A  ALRDV +AL +P  Q++ L              
Sbjct: 384  VIQYVFQRYGRNRAALTAVASSYRATGALRDVAKALGLPPDQINALAGCCGRWS------ 437

Query: 490  QAIADDSRFRE--ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            + I DDSR RE      +P + R+L ++  L G  RH S H  G VI ++PL  LVP+  
Sbjct: 438  EHIPDDSRLREAGFDPDNPVLRRVLVLTDALIGFPRHLSQHPGGFVISEQPLDTLVPIEN 497

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
               +D  V Q++   ++  GL+K D L L  L+ +++  D +   RG +  ++ +P +D 
Sbjct: 498  ASMADRTVIQWDKDDLDAVGLLKVDVLALGMLSAIRRCFDLIEHYRGTRWTIATLPAEDK 557

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 558  PTYEMISRADTIGVFQIESRAQMAMLPRLRPKTFYDLVIQVAIVRPGPIQGDMVHPYLRR 617

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +N +E++      + P+ + T GV ++QEQVM++A + + Y+  EAD LRRAM    +  
Sbjct: 618  RNKEEEVDYPSEELKPVFERTLGVPLFQEQVMELAIVAAEYTPDEADKLRRAMAAWKRHG 677

Query: 725  M-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
              +  + R        G        IFE +  F  YGF +SHAA++A+++Y + W+K H 
Sbjct: 678  SLEPHRVRLTERMLAKGYQPDFIARIFEQIKGFGSYGFPESHAASFALLTYASCWLKRHE 737

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYYS 838
            P  F  A +           +  QDAR+  ++I P  V     D  +         I   
Sbjct: 738  PAAFACALINSWPMGFYNPDQILQDARRHRLEIRPVDVRHSGWDCSLEPSRQAQPAIRLG 797

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L  ++G   T A+ I  A   +PF  + D C R +   L  R  E L  AGAL      R
Sbjct: 798  LRMVRGFRETDAQRIEAARQRQPFTDIHDLCLRAE---LEPRAREQLADAGALRGLAGHR 854

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             +   ++  I                 +FA         I L    + +      N+   
Sbjct: 855  HRARWAVAGI------------EPQLPLFASLPAPEETSINLP---LPSVGEDLFNDYAT 899

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG     HPL + +  L+    +   E      G  + +A +V+ +Q+ +T  G  + +V
Sbjct: 900  LGTTLGPHPLLLLRDELKARRCRSSRELGTIEHGRPVSVAGLVIGRQRPQTASG--VIFV 957

Query: 1019 TFSEPAKEYEANFF 1032
            T  +         +
Sbjct: 958  TLEDEFGMVNVVVW 971


>gi|308154503|ref|NP_249360.3| DNA polymerase alpha chain [Pseudomonas aeruginosa PAO1]
 gi|71151832|sp|Q9I5Q2|DNAE2_PSEAE RecName: Full=Error-prone DNA polymerase
 gi|9946548|gb|AAG04058.1|AE004502_1 probable DNA polymerase alpha chain [Pseudomonas aeruginosa PAO1]
          Length = 1031

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 280/1042 (26%), Positives = 457/1042 (43%), Gaps = 78/1042 (7%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +  +L +  ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q
Sbjct: 1    MAAWLVRMSAYAELHCLSNFSFQRGASSATELFARAARLGYRALAITDECSLAGIVRAWQ 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A    +Q I+G ++ ++                  P +VLL    EGYQ L  L++R  
Sbjct: 61   AAREHQVQLIVGSEIRLE----------------QGPKLVLLAEDLEGYQNLCRLITRGR 104

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 K   R+    LQ+     L +      G               ++    ++ F  
Sbjct: 105  -RQADKGHYRLLREDLQQPLAGLLAIWLPNDHGD--------------EQAAWLRERFPQ 149

Query: 181  RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            RL++ ++ HRG  D  R  +++ LA    LP VA  +    +       D + A+ +   
Sbjct: 150  RLWLGVELHRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLP 209

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            VS+       P+     R+            L  T++IA RC F L+      PR +   
Sbjct: 210  VSEAGAYLF-PNGERHLRTLEALQGIYPQALLAETLKIAERCRFDLEQLKYQYPRELVPA 268

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              D      + LR+    G+  R   GA A        R++++ EL +IA + +  YFL 
Sbjct: 269  GHD----PASWLRHLTEQGIARRWPNGASA------KVRKQIERELELIAELGYESYFLT 318

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D + +A+   I    GRGS A S   +AL IT++DP R +LLFERFL+ +R   PD D
Sbjct: 319  VQDIVAFARGRKIL-CQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPDID 377

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  +RR+EVI+YV  +YG +R A      +     A+RDV +AL +P  QVD L    
Sbjct: 378  VDFEHERREEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLANCC 437

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                    S + + +           P + R+L ++ +L G  RH S H  G VI ++PL
Sbjct: 438  GRWSDQAPSAERLEE----AGFDPQSPILRRVLALTDELIGFPRHLSQHPGGFVISEQPL 493

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
              LVP+     ++  V Q++   ++  GL+K D L L  L+ L++S D +        LS
Sbjct: 494  DTLVPVENASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRGGKRLS 553

Query: 600  LIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +      D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  
Sbjct: 554  IASIPSEDPATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPIQG 613

Query: 658  IVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V+    R+NG+E +      ++ + + T GV ++QEQVM++A + + Y+  EAD LRR
Sbjct: 614  DMVHPYLRRRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEADELRR 673

Query: 716  AMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +M    +    +  +ER   G    G     A  IFE +  F  YGF +SHAA++A+++Y
Sbjct: 674  SMAAWKRHGGLEHHRERLTRGMLAKGYEADFAARIFEQIKGFGSYGFPESHAASFALLTY 733

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831
             ++W+K H P  F  A +           +  QDAR+  +Q  P  V     D  +    
Sbjct: 734  ASSWLKRHEPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCSLESFG 793

Query: 832  --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                 I   L  I+G     AR I +    +PF  + D   R    +L+ R LE L  AG
Sbjct: 794  QAQPAIRLGLRMIRGFREEDARRIEQVREAEPFLDVHDLGRRA---RLDARALELLADAG 850

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            AL      R +   ++ ++                 +FA         ++L    + +  
Sbjct: 851  ALRGLAGHRHKARWAVASV------------EPQLPLFAEGTAIEESTVSLP---LPSRG 895

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                ++  +LG     HPL + +  L+    +   E      G  IR+A +VV +Q+ +T
Sbjct: 896  EELLSDYALLGTTLGPHPLKLLRGQLKARRCRDSRELAKLGHGRPIRVAGLVVGRQRPQT 955

Query: 1010 RKGSRIGWVTFSEPAKEYEANF 1031
              G  I ++T  +         
Sbjct: 956  ASG--ITFITLEDEFGMVNVVV 975


>gi|238029059|ref|YP_002913284.1| DNA polymerase III, alpha subunit [Burkholderia glumae BGR1]
 gi|237880636|gb|ACR32964.1| DNA polymerase III, alpha subunit [Burkholderia glumae BGR1]
          Length = 1049

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 289/1037 (27%), Positives = 466/1037 (44%), Gaps = 63/1037 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQ  S++S L GA     ++++ A     AIAITD  +L   +    +A AAG+ 
Sbjct: 10   PAYAELQCASNFSFLHGASRAEELVERAARLGYSAIAITDECSLAGVVRAHVEAKAAGLP 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG    +   D                    L    EGY  L EL++        K +
Sbjct: 70   LIIGSHFQLTSADGSPALA-----------FTALAMNREGYGNLCELITLARTRGA-KGT 117

Query: 129  VRICLSWLQ--EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L+  E     L  L    +  I    F  + Q  + ++  F  +FGDR  V L
Sbjct: 118  YRLAPLDLEHPEAPLTHLRGLPDCMT--ILTPDFPANEQRLDAQIEWFAAVFGDRARVAL 175

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              H R  D      V + A  + +P+VAT+  +          DVL A+     V ++  
Sbjct: 176  TLHARAMDDIHRGAVERAAARYGVPVVATSWPVMHVRSRKPLQDVLTAIRLGRSV-RECG 234

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     RS +         ALE TV +ARRC+F L       P  +         
Sbjct: 235  YELAPNAERHLRSRLRLSNLYPAGALEETVRVARRCTFSLDELRYEYPDELVPAG----Y 290

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR +   G   R   G           + +++ EL +IA++K+  YFL V D ++
Sbjct: 291  SPASYLREQTYIGAHARFPGGIPFH------VQAQIEHELQLIAKLKYEPYFLTVYDIVR 344

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  NI    GRGS A S   Y L +T++DP R ++LFERF++ +R   PD D+DF   
Sbjct: 345  FARSQNIL-CQGRGSAANSAVCYCLRVTEVDPARGNMLFERFISCERNEPPDIDVDFEHQ 403

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV++Y+  KYG +R A      + + + ALR+ G+AL +    VDR+ K      + 
Sbjct: 404  RREEVMQYIYAKYGRDRAALTAAVSTYRPRGALREAGKALGVDPIIVDRVAKAHHWFDSK 463

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               L   A+        +  P   +    +  L G  RH S H+ G VI    LS++VP+
Sbjct: 464  ADLLARFAE----AGLDVEAPLNQQWAAFATALLGYPRHLSQHSGGFVISRTKLSRMVPI 519

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604
                 +D  + Q++   IE  G++K D L L  L++++++L+ +  +RG   +L  IP +
Sbjct: 520  ENAAMADRTIIQWDKDDIEALGILKVDILALGMLSMVRRALEMISEKRGEPFELQDIPPE 579

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY +L    ++G+FQ+ES      L  +QP C  D++  V++ RPGP+   +V+   
Sbjct: 580  DAATYAMLCEGDSMGVFQVESRAQMSMLPRLQPRCFYDLVIEVAIVRPGPVQGGMVHPFL 639

Query: 665  KNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721
            +  +  E +    P ++  LK T GV I+QEQVMQ+A L +G+S  EAD LRRAM     
Sbjct: 640  RRRQGLEPVTFPSPDVEKALKRTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKR 699

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K  ++    R + G    G  +  A  IF  +  F DYGF +SHAA++A++ Y +AW++ 
Sbjct: 700  KGGLEPYHARLVEGMLARGYDRDFAEAIFAQIKGFGDYGFPESHAASFALLVYASAWLRR 759

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYY 837
            H P  FLAA +  +        +  QDAR+ +++I+P  V     D  +  +     +  
Sbjct: 760  HEPGVFLAALLNSQPMGFYTPSQLLQDARRRSVRILPVDVTISTWDSTLEGDTTAAPVRV 819

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GY 896
             ++ IKG+    A  I  A + +PF  + D   R     L+R  L+ L  AGAL    G 
Sbjct: 820  GMSLIKGMRAEAAARIELARSVRPFADVADLARRA---ALDRHDLQVLAAAGALRSLAGG 876

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R   L            +        + +   E+   +           +      ++ 
Sbjct: 877  NRRDALW-----------LAAAAVPGRDLLRGTERDDAA-----PALPQASEGRELVSDY 920

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            R +GF    HPL++ +  LR   +    E      G   R   +V  +Q+  T KG  + 
Sbjct: 921  RSMGFTLGRHPLELLRARLRTDRLLPAAELAQLRNGQFARACGIVTVRQRPGTAKG--VL 978

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++T  +   +     +P
Sbjct: 979  FITLEDETGQTNVIIWP 995


>gi|330808697|ref|YP_004353159.1| Error-prone DNA polymerase [Pseudomonas brassicacearum subsp.
            brassicacearum NFM421]
 gi|327376805|gb|AEA68155.1| Error-prone DNA polymerase [Pseudomonas brassicacearum subsp.
            brassicacearum NFM421]
          Length = 1025

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 291/1032 (28%), Positives = 455/1032 (44%), Gaps = 76/1032 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   +  +   +   A+AITD   L   +   Q A    +Q I
Sbjct: 5    YAELHCLSNFSFQRGASSALELCRRARQEGYQALAITDECTLAGIVRAWQAAKELELQLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++                  P +VLLV   EGYQ L  L++R     + K   R
Sbjct: 65   VGSEIQVENG----------------PKLVLLVENLEGYQALCRLITRARRRSE-KGHYR 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            I      +  + GL+ L                   AE+     + +F  RL++ +Q H 
Sbjct: 108  IVREDFDQPLS-GLLALW----------IAEGK--DAEEHGRWLQSIFAGRLWLTVQLHC 154

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               DR R +  + LA   +LP+VA+ +            D + A+ H   V++  +    
Sbjct: 155  GQDDRRRLADSLALAERLDLPVVASGDVHMHVRGRRALQDTMTAIRHHVTVAEAGQRLHP 214

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               +   RS            L+ T+ IARRC+F L       PR +  E  D      +
Sbjct: 215  NGEH-HLRSRKDLADLYPRALLDETLNIARRCTFDLGQLRYQYPRELVPEGHD----PAS 269

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR     G+  R   GA          R ++D EL++IA + +  YFL V D + +A+ 
Sbjct: 270  WLRELTERGMRERWKDGA------TDKVRAQIDKELSLIAELGYDSYFLTVQDIVSFARS 323

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
             +I    GRGS A S   YAL IT+IDP   SLLFERFL+ +R   PD D+DF  DRR+E
Sbjct: 324  RHIL-CQGRGSAANSAVCYALGITEIDPSLTSLLFERFLSRERNEPPDIDVDFEHDRREE 382

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V++YV  +YG  R A      S     A+RDV +AL +P  QV+ L             +
Sbjct: 383  VLQYVFQRYGRHRAALTAVVSSYHGAGAVRDVAKALGLPPDQVNALADCCGRWSDEAPPV 442

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            + +    R        P + R+L ++++L G  RH S H  G VI ++PL  LVP+    
Sbjct: 443  ERL----REGGFDPDSPVLRRVLSLTRQLIGFPRHLSQHPGGFVISEQPLDTLVPVENAA 498

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
             ++  + Q++   ++  GL+K D L L  L+ +++  D +   RG +  L+ +P +D  T
Sbjct: 499  MAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLIEHYRGQRYALASLPQNDRAT 558

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKN 666
            Y +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R+N
Sbjct: 559  YEMISRADTIGVFQIESRAQMSMLPRLRPKTFYDLVIEVAIVRPGPIQGGMVHPYLRRRN 618

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM- 725
             +E +      +  +L  T GV ++QEQVMQIA + + Y+  EAD LRR+M    +    
Sbjct: 619  KEEAVTYPSEALKQVLNRTLGVPLFQEQVMQIAIVAADYTPGEADQLRRSMAAWKRHGGL 678

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +  +ER   G  KNG +   A  IFE +  F +YGF +SHAA++A+++Y ++W+K H P 
Sbjct: 679  EPHRERLAQGMKKNGYTAEFAAQIFEQIKGFGNYGFPESHAASFALLTYASSWLKCHEPA 738

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYYSLA 840
             F  A +           +  QDAR+  + I P  V     D  +         I   L 
Sbjct: 739  AFACALINSWPMGFYSPDQILQDARRHQLSIRPVDVRASDWDCSLEPMEGRQPAIRMGLR 798

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             +KG     AR I  A   +PF  + D   R    +L+ R L  L  AGAL      R +
Sbjct: 799  MVKGFREEDARRIEAARRHRPFSDVADLGERA---QLDARALAQLADAGALQGLAGDRHR 855

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
                +  +QK               +FA         + L K            +   LG
Sbjct: 856  ARWEVAGVQK------------QLGLFAGLPSQEEPPVALPK---PTLGENLFADYTTLG 900

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
                 HPL + +P LR    +   E      G N+ +A +V  +Q+  T  G  + +VT 
Sbjct: 901  TTLGPHPLALLRPELRARRCRSSRELQDVEHGRNVSVAGLVTGRQRPGTASG--VTFVTL 958

Query: 1021 SEPAKEYEANFF 1032
             +         +
Sbjct: 959  EDEFGNLNVVVW 970


>gi|256370678|ref|YP_003108503.1| putative bifunctional DNA polymerase III subunit alpha/DNA polymerase
            III subunit epsilon [Candidatus Sulcia muelleri SMDSEM]
 gi|256009470|gb|ACU52830.1| putative bifunctional DNA polymerase III, alpha subunit (DnaE)/DNA
            polymerase III, epsilon subunit (DnaQ) [Candidatus Sulcia
            muelleri SMDSEM]
          Length = 1406

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 323/1071 (30%), Positives = 546/1071 (50%), Gaps = 67/1071 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------A 64
            F H+  H+ +S+L   + +N+++ K    +  A+ ITD  N+        K         
Sbjct: 228  FSHIHNHTYFSILSSTIDINSLIKKTIEYEMDAVGITDYGNMMGVFNLINKIKTINESEK 287

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              I+PIIGC+L I   DN  +    K     +   VL+     GY  L +L S+ ++   
Sbjct: 288  KKIKPIIGCELFIS--DNYLIKKFTKKNPDKIYHQVLVAKNKNGYDNLSKLCSKGFIDGY 345

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 RI  + +++   E LI ++G  +  I         + AEK    +  LF D  Y+
Sbjct: 346  YSGIPRIGKNLVEKY-KENLIAISGDLNSEIPLTLLNKGEKEAEKVFKWWHNLFKDDFYI 404

Query: 185  NLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             + RH   +    ++ +++ A  +++  +A NN+ +L ++D  AHD+L+ V +    S  
Sbjct: 405  EILRHGLEEEDHVNKILIKFAKKYKVKFIAQNNNFYLEKKDANAHDILLCVKNCQKQSIP 464

Query: 244  -------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI-------LQVHA 289
                          + Y K + +M ++FSD+PEA +N  E+  +           L    
Sbjct: 465  IGKGKGFRFGFPNKEFYFKKKLQMYNLFSDIPEAFDNLKELIEKVEVYEISNPILLPKFE 524

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
                   +    +    E   L+     G +           +  +  +++++FEL  I 
Sbjct: 525  IPKKWRKKDCKSNDIHYENEYLKYLTYKGAKK-------KFDHLNEQIKKKIEFELETIK 577

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            ++ + GYFLIV D I  AKK  + VGPGRGS AGSV AY + IT IDP++++LLFERFLN
Sbjct: 578  KIGYPGYFLIVQDLILQAKKIGVEVGPGRGSVAGSVVAYCIGITKIDPIKYNLLFERFLN 637

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            PDR+S+PD DIDF    R+++I++V NKYG + VAQIIT+G + AK+++RD  R L +  
Sbjct: 638  PDRVSLPDIDIDFDDKGREKIIQWVVNKYGKDNVAQIITYGKMGAKSSIRDTARVLNLSL 697

Query: 470  SQVDRLCKL-IPNDPAHPVSLQAIADDSRF-------------REARLADPSVDRLLEIS 515
             + D++ K+   N     +  + I D  +              +  +  +    + L+ +
Sbjct: 698  EETDKMAKMVPTNFSLKEIITKDIKDLKKILKFEELKNVITLKKIFKEKNTLQAKTLKQA 757

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
              +EG  R+   HA GI+I    + + +P+ +   S+L +TQF+ + +EK GL+K D LG
Sbjct: 758  MGIEGSVRNTGIHACGIIITPSDIKKYIPVAKTKDSNLLLTQFDNEVVEKMGLLKMDLLG 817

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            LKTLT+++++L  +  R   + L  IP DD +TY L     T+ +FQ ES GM++ L+ +
Sbjct: 818  LKTLTIMKETLFLIKNRN--IKLENIPLDDEKTYELFKNGETVAVFQYESHGMQKYLKQL 875

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
            +PD  +D+IA+ +LYRPGP+  I  +  RK+G+EKI    P +   LKET G+ +YQEQV
Sbjct: 876  KPDKFDDLIAMNALYRPGPMQYIPNFIARKHGQEKISYDLPELKEFLKETYGITVYQEQV 935

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M I+Q +SG+S  +AD+LR+A+GKK K  +   K++FI G  KNG S  I   I++    
Sbjct: 936  MLISQKISGFSKGDADLLRKAIGKKEKNLLSNMKKQFIDGGKKNGFSSQILEKIWKDWKS 995

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSH+  Y+ I+++TA++KTHYP E++A+ ++  M N++ I  F ++ ++  + 
Sbjct: 996  FASYAFNKSHSTCYSYIAFKTAYLKTHYPAEYMASVLSNNMKNIKDISFFIEECKRIGVI 1055

Query: 816  IMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
            ++ P +N     F V     I + + AIKG+G  + + I++    K ++S+     +VD 
Sbjct: 1056 VLGPDINESDYKFTVNKLGFIRFGIGAIKGIGEYSVKSILKERK-KKYNSILGLIKKVDL 1114

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLL------QSLDNIQKYAQWVEKNRTNKHENIFA 928
            + +N++VLE+LV +GA D F   R Q          ++ I K+    +K + N   ++F 
Sbjct: 1115 RLVNKKVLENLVVSGAFDNFKIQRSQYFYEENGSNMIEKIIKFGVKYKKIKENIKNSLFK 1174

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-- 986
            + K     K   +     N   + + E+ V+G Y + HPL+ YK  ++ +     E+   
Sbjct: 1175 NIKDIEILKPNFKSCKNWNLFEKLKKEKEVIGMYLTYHPLNEYKYEIKHLTNATIEDLNF 1234

Query: 987  -VATIRGNNIRLAAMVVSKQQKKT----RKGSRIGWVTFSEPAKEYEANFF 1032
                  G  I++  ++      K+    +           +   + E   F
Sbjct: 1235 NKEKFIGKQIKICGIIS-----KSLNLLKNNKNYIIFILEDYKSKKEFKLF 1280


>gi|221194701|ref|ZP_03567758.1| DNA polymerase III subunit alpha [Atopobium rimae ATCC 49626]
 gi|221185605|gb|EEE17995.1| DNA polymerase III subunit alpha [Atopobium rimae ATCC 49626]
          Length = 1276

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 328/1038 (31%), Positives = 523/1038 (50%), Gaps = 76/1038 (7%)

Query: 61   KACAAG-----IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            +A  A      I+PI GC+      D ++   +      T   ++LL     GY  L+++
Sbjct: 114  EAVKANKPHPLIKPIFGCEAYFITDDCIERGTK-----QTRYHLILLAKNETGYVNLMKM 168

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +S     +      R  L  L+    EG+I  +   SG I R+FF    + AE+  L +K
Sbjct: 169  MSEAASKEMFYFKPRTTLDMLRRYH-EGIICTSACVSGIIPRSFFAGQPEEAERWALIYK 227

Query: 176  KLFGDRLYVNLQRHRGYDRYRE--------SQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            ++FGD  Y+ +Q H   D             Q++ L +   + +VATN++ +L+ ED   
Sbjct: 228  EIFGDDFYLEVQDHGLSDPNWNGFTDRTLSEQILNLGHKLNIKVVATNDNHYLTREDASV 287

Query: 228  HDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
             D+   +   +  +  +R R++  + Y K   EM  IFS  PE ++NT+E+A +C++ L 
Sbjct: 288  QDIASCIGTGSKFADANRKRMSGNEFYFKTEEEMREIFSWAPEVIDNTLEVADKCNYELD 347

Query: 287  VHAPILPRFIEKECDDI--QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                        +  D+   +  E   R +   GL  R  +          + ++R ++E
Sbjct: 348  -----WTHMYLPKFPDLAEGETSEERFRKECEEGLARRYGENWREVEISGINVKERFEYE 402

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
             ++I +  F+ YFLIV ++++WAK+N I VGPGRGS AG++ AYA+ IT  DPL   L+F
Sbjct: 403  YDIICKKGFADYFLIVQEYVRWAKQNGIGVGPGRGSAAGAIVAYAMDITTFDPLENGLMF 462

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFL+P R  MPD D+DF  +RR EV+ +V+  YG ERV+ +IT+ +++AK A+ D  R 
Sbjct: 463  ERFLSPQRSEMPDIDMDFDDERRLEVVEHVRQLYGPERVSHVITYSTIKAKQAINDACRV 522

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIA--------DDSRFREARLADPSVDRLLEISQ 516
            L  P  Q  RL K+I NDP   +S              +  F EA   + +   +++ + 
Sbjct: 523  LDYPVYQGQRLSKMISNDPKAQLSKVLHKGDGEKNDLYNPDFEEAYNTEEASREIIDAAL 582

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             +EGL+R    HA  ++I   P++  VP   D + ++ +TQF    +   GL+K DFLGL
Sbjct: 583  AIEGLHRGEGVHACAVLIAPTPVNDHVPTKMDTKGEVEITQFEGHSVADMGLLKMDFLGL 642

Query: 577  KTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            +TLT++ ++L  +       +++  IPF+D E Y L+    T G+FQ+ES+GM   ++GM
Sbjct: 643  RTLTVISRALKNIKANFDVDINVDEIPFEDPEIYRLMREGRTSGVFQIESAGMTATIKGM 702

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
            +P   + I+AL++LYRPGP+   +V  Y +R NG+E+ V   P +  +L ET G ++YQE
Sbjct: 703  RPTEFKHIVALIALYRPGPLGAGMVSSYIDRMNGREEPVDYDPRLHDILAETYGTMVYQE 762

Query: 694  QVMQIAQLLSGYSLSEADV------------LRRAMGKKIKEEMDKQKERFISGASKNGI 741
            QVMQI+  +SG++  E+D             ++  +        +  ++ +  GA +NG 
Sbjct: 763  QVMQISMKMSGFTAGESDKVRKAVAKKKIKLMQEVIQHWDDGADETMEQHWKEGAVRNGF 822

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
             +  A  I+E + KFA Y FNKSH+A YA++  QTAW+K HYP E++AA +T  M   +K
Sbjct: 823  KRETAEIIWEDVLKFASYAFNKSHSAGYAILVMQTAWLKAHYPHEYMAAVLTSFMGKTDK 882

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADK 860
            I  +    RQ  I++  P +N    DF      I +  A I+GVG   A  IM       
Sbjct: 883  IVHYVSACRQEGIKVSQPDINESGRDFTATKEGIRFGFAGIRGVGAGVAEAIMAERQKGG 942

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN-----IQKYAQWV 915
            PF +L DF  R+D+ +  R V+E+L+ AGA D  GY+RMQL++ +D      +   A   
Sbjct: 943  PFSNLRDFIDRMDASQAKRNVVEALIKAGAFDSTGYTRMQLMKLIDKNNPENLLDSAAKR 1002

Query: 916  EKNRTNKHENIFAH----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
            ++++ +   ++F      E   F++              +   E  VLG Y S HPL  Y
Sbjct: 1003 QRDKASGQISMFDLFSEVEGSGFTEDFPDPDGVEWERRFKLSQEYDVLGIYVSDHPLTPY 1062

Query: 972  KPILRKMGIKGYEESVAT----------------IRGNNIRLAAMVVSKQQKKTRKGSRI 1015
               L         +  AT                  G NIRL+ MV + Q++ T+ G  +
Sbjct: 1063 AYALSLARDYELVDIDATEEYRAPDGGIKERFKVPEGENIRLSGMVTNIQKRITKNGDPM 1122

Query: 1016 GWVTFSEPAKEYEANFFP 1033
              VT  +   E     FP
Sbjct: 1123 AIVTLEDMEGELSLVLFP 1140



 Score =  101 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 31/57 (54%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
          +FVHL  HS +S+L+ A  +N+++ +    + PA+A+TD   LF   +F        
Sbjct: 2  AFVHLHNHSDFSILDAATRVNDMVKRAVDLKMPALALTDHGYLFGIPDFDLACRKYN 58


>gi|15893134|ref|NP_360848.1| DNA polymerase III subunit alpha [Rickettsia conorii str. Malish 7]
 gi|81595527|sp|Q92GB2|DPO3A_RICCN RecName: Full=DNA polymerase III subunit alpha
 gi|15620342|gb|AAL03749.1| DNA polymerase III alpha chain [Rickettsia conorii str. Malish 7]
          Length = 1181

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 404/1081 (37%), Positives = 607/1081 (56%), Gaps = 79/1081 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  +++  ++++ PAI + D  NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKKGLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I                     I+L+     GY+ L++L S  +  +  K  
Sbjct: 63   PIHGVILNIKYD------------IDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L E   EGLI L   + G + +     + + A       +++ GDR Y  + R
Sbjct: 111  DHIDFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMR 169

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +    E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  
Sbjct: 170  HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y K+  EM+ +FSDLP A++NTV +  RC F     A      +          E
Sbjct: 230  VSENCYFKSPHEMIELFSDLPSAIQNTVNLRERCYF-----AAHANPPMLPNFATENISE 284

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360
             + ++  A  GL  RLA    ++    +       +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TDLIKKDAKEGLLARLATKFKSENIALENQEALKTEYFARLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405  DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464

Query: 481  NDPAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PVS  QA+ +      A   +           +  +++ S  LEGL+RH+STHAA
Sbjct: 465  FSAVNPVSLEQAMREVPELANAAKGNGLYNLDGEAELIKLVIDTSLILEGLHRHSSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  SD+ +  ++MK+ E AGLIKFDFLGL+TLT++      L 
Sbjct: 525  GIVIAGTDLVDIVPVYKDANSDMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            ++G++VD + + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLQQPDYLHELLQPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIK+EM++Q+E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAA+Y 
Sbjct: 705  DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            VISYQTA++K +YP  FL A + LE++N +KI  F Q+A+   I+I+ P++N     F V
Sbjct: 765  VISYQTAYLKANYPAAFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSV 824

Query: 831  G------------------------------------DNRIYYSLAAIKGVGTTTARHIM 854
                                                    I ++L AIKGV     + + 
Sbjct: 825  KFSDTVIPHSVKPVIPRLDRGIQKISKDTVVKPRCDIAGAIIFALGAIKGVTPNFGKLVT 884

Query: 855  EASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
            +       F S+ DF  R+  K +N ++LE+L+ +G  D    +R+QLL S+  +  Y+ 
Sbjct: 885  DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYST 944

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
               + + +   ++    K +      L      + +     E   +G + S HPL  Y+ 
Sbjct: 945  AYHEEQESNQFSL---IKVSSLSPTILVSSDYADKNTLAFYEFEAMGLFISNHPLTEYQE 1001

Query: 974  ILRKMGIKGYEES-VATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            I  ++ I    +       G   + LA ++  K  + + +G R   +  S+P   +E + 
Sbjct: 1002 IFSRLNILNTADLHNNLPDGTNRVNLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSI 1060

Query: 1032 F 1032
            F
Sbjct: 1061 F 1061


>gi|296168813|ref|ZP_06850495.1| DNA-directed DNA polymerase [Mycobacterium parascrofulaceum ATCC
            BAA-614]
 gi|295896516|gb|EFG76163.1| DNA-directed DNA polymerase [Mycobacterium parascrofulaceum ATCC
            BAA-614]
          Length = 1080

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 278/1038 (26%), Positives = 481/1038 (46%), Gaps = 61/1038 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S  +  L  HS++S L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 42   SSVPYAELHAHSAFSFLDGASTPEELVEEAARLGLRALALTDHDGLYGAVRFAEAAAELE 101

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ + G +L +          + +TP P  P +++L    EGY+RL   ++  +L    K
Sbjct: 102  LRTVFGAELSLGPG------ARTETPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 155

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
               R     L E       +LTG   G + +A        A + L      FG DR+ + 
Sbjct: 156  GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQG-PDAAGRALADLVDRFGADRVSIE 214

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L  H    D  R + +  LA    + +VAT  + F           + A+     +    
Sbjct: 215  LTHHGQPPDDERNAALAGLAPRFGVGVVATTGAHFAGPSRRRLAMAMGAIRARQSLDAAA 274

Query: 245  RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     +L++  EM  +F+  P+A+    ++  +C+F L + AP LP F        
Sbjct: 275  GWLAPLGGSHLRSGEEMARLFAWRPDAVTAAADLGEQCAFGLALIAPRLPPFDVPAG--- 331

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E++ LR   + G       G       A     +++ EL VIAR++F GYFL+V D 
Sbjct: 332  -HTEDSWLRQLTMTGAR-----GRYGTPDAAPRAFSQIEHELKVIARLQFPGYFLVVHDI 385

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
             ++ ++NNI    GRGS A S   YAL +T +DP+   LLFERFL+P R   PD D+D  
Sbjct: 386  ARFCRENNIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDMDIE 444

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+R++VI+YV +KYG +  AQ+    + + + A+RD+ RAL     Q D   K + +  
Sbjct: 445  SDQREKVIQYVYDKYGRDYAAQVANVITYRGRIAVRDMARALGFSQGQQDAWSKQLGHWN 504

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                    +AD               ++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 505  G-------LADSPDVEGI------PPQVVDLANQIRNLPRHMGIHSGGMVICDRPIADVC 551

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+     ++  V Q++       GL+KFD LGL  L+ L  ++D +A+   ++VDL+ + 
Sbjct: 552  PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGIEVDLARLD 611

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660
              +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  
Sbjct: 612  LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRIFYDLVVEVALIRPGPIQGGSVHP 671

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R+NG + +V  HP ++P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAM  K
Sbjct: 672  YIRRRNGLDPVVYDHPSMEPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 731

Query: 720  KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            +  E M + ++RF  G    +G +  +    +E L  FA++GF +SHA ++A + + ++W
Sbjct: 732  RSTERMRRLRDRFYDGMRALHGATDEVIDRAYEKLEAFANFGFPESHALSFASLVFYSSW 791

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836
             K H+P  F AA +  +       +    DAR+  + +  P VN       +      + 
Sbjct: 792  FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAHATLENAGTEVR 851

Query: 837  YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L A++ +G   A  ++     + PF SL D  +R+   +L+    E+L  AGA  CFG
Sbjct: 852  LGLGAVRHIGDDLAERLVAERKANGPFASLLDLTTRL---QLSVPQTEALATAGAFGCFG 908

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             SR + L +       A     +R     +              +      +       +
Sbjct: 909  MSRREGLWAAG----AAATQRPDRLPGVGS-----------SSHVPALPGMSELELAAAD 953

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     +P    +  L  MG+    + +    G+ + +A  V  +Q+  T +G  +
Sbjct: 954  VWATGVSPDSYPTQFLRADLDAMGVVPAGKLLDVPDGDRVLIAGAVTHRQRPGTAQG--V 1011

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             ++   +          P
Sbjct: 1012 TFLNLEDETGMVNVLCTP 1029


>gi|254239049|ref|ZP_04932372.1| hypothetical protein PACG_05227 [Pseudomonas aeruginosa C3719]
 gi|126170980|gb|EAZ56491.1| hypothetical protein PACG_05227 [Pseudomonas aeruginosa C3719]
          Length = 1031

 Score =  629 bits (1621), Expect = e-177,   Method: Composition-based stats.
 Identities = 279/1042 (26%), Positives = 460/1042 (44%), Gaps = 78/1042 (7%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +  +L +  ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q
Sbjct: 1    MAAWLVRMSAYAELHCLSNFSFQRGASSATELFARAARLGYRALAITDECSLAGIVRAWQ 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A    +Q I+G ++ ++                  P +VLL    EGYQ L  L++R  
Sbjct: 61   AAREHQVQLIVGSEIRLE----------------QGPKLVLLAEDLEGYQNLCRLITRGR 104

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 K   R+    LQ+             +G +      +      +++   ++ F  
Sbjct: 105  -RQADKGHYRLLREDLQQ-----------PLAGLLAIWLPNDHED---EQVAWLRERFPQ 149

Query: 181  RLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            RL++ ++ HRG  D  R  +++ LA    LP VA  +    +       D + A+ +   
Sbjct: 150  RLWLGVELHRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLP 209

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            VS+       P+     R+            L  T++IA RC F L+      PR +   
Sbjct: 210  VSEAGAYLF-PNGERHLRTLEALQGIYPQALLAETLKIAERCRFDLEQLKYQYPRELVPA 268

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              D      + LR+    G+  R   GA A        R++++ EL +IA + +  YFL 
Sbjct: 269  GHD----PASWLRHLTEQGIARRWPNGASA------KVRKQIERELELIAELGYESYFLT 318

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D + +A+   I    GRGS A S   +AL IT++DP R +LLFERFL+ +R   PD D
Sbjct: 319  VQDIVAFARGREIL-CQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPDID 377

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  +RR+EVI+YV  +YG +R A      +     A+RDV +AL +P  QVD L    
Sbjct: 378  VDFEHERREEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLANCC 437

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                    S + + +           P + R+L ++ +L G  RH S H  G VI ++PL
Sbjct: 438  GRWSDQAPSAERLEE----AGFDPQSPILRRVLALTGELIGFPRHLSQHPGGFVISEQPL 493

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
              LVP+     ++  V Q++   ++  GL+K D L L  L+ L++S D +        LS
Sbjct: 494  DTLVPVENASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRGGKRLS 553

Query: 600  LIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +      D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI  
Sbjct: 554  IASIPSEDPATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPIQG 613

Query: 658  IVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V+    R+NG+E +      ++ + + T GV ++QEQVM++A + + Y+  EAD LRR
Sbjct: 614  DMVHPYLRRRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEADELRR 673

Query: 716  AMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +M    +    +  +ER   G   NG     A  IFE +  F  YGF +SHAA++A+++Y
Sbjct: 674  SMAAWKRHGGLEHHRERLTRGMLANGYEADFAARIFEQIKGFGSYGFPESHAASFALLTY 733

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831
             ++W+K H P  F  A +           +  QDAR+  +Q  P  V     D  +    
Sbjct: 734  ASSWLKRHEPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCSLESFG 793

Query: 832  --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                 I   L  I+G     AR I +    +PF  + D   R    +L+ R LE L  AG
Sbjct: 794  QAQPAIRLGLRMIRGFREEDARRIEQVREAQPFLDVHDLGRRA---RLDARALELLADAG 850

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            AL      R +   ++ ++                 +FA         ++L    + +  
Sbjct: 851  ALRGLAGHRHKARWAVASV------------EPQLPLFAEGTVIEESTVSLP---LPSRG 895

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                ++  +LG     HPL + +  L+    +   E      G  IR+A +V+ +Q+ +T
Sbjct: 896  EELLSDYALLGTTLGPHPLKLLRGQLKARRCRDSRELAKLGHGRPIRVAGLVIGRQRPQT 955

Query: 1010 RKGSRIGWVTFSEPAKEYEANF 1031
              G  I ++T  +         
Sbjct: 956  ASG--ITFITLEDEFGMLNVVV 975


>gi|157829043|ref|YP_001495285.1| DNA polymerase III subunit alpha [Rickettsia rickettsii str. 'Sheila
            Smith']
 gi|165933767|ref|YP_001650556.1| DNA polymerase III subunit alpha [Rickettsia rickettsii str. Iowa]
 gi|157801524|gb|ABV76777.1| DNA polymerase III subunit alpha [Rickettsia rickettsii str. 'Sheila
            Smith']
 gi|165908854|gb|ABY73150.1| DNA polymerase III alpha subunit [Rickettsia rickettsii str. Iowa]
          Length = 1181

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 405/1081 (37%), Positives = 608/1081 (56%), Gaps = 79/1081 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  +++  ++++ PAI + D  NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKKGLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I                     I+L+     GY+ L++L S  +  +  K  
Sbjct: 63   PIHGVILNIKYD------------IDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L E   EGLI L   + G + +     + + A       +++ GDR Y  + R
Sbjct: 111  DHINFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMR 169

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +    E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  
Sbjct: 170  HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y ++  EM+ +FSDLP A++NTV +  RC F     A      +          E
Sbjct: 230  VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYF-----AAHANPPMLPNFATKDISE 284

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360
             + ++  A  GL  RLA    ++    +       +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TDLIKKDATEGLLARLAAKFKSENIALENQEALKTEYFARLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405  DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464

Query: 481  NDPAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PVS  QA+ +      A   +           +  +++ S  LEGL+RH+STHAA
Sbjct: 465  FSAVNPVSLEQAMREVPELANAAKGNGLYNLDGEAELIKLVIDTSLILEGLHRHSSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  SD+ V  ++MK+ E AGLIKFDFLGL+TLT++      L 
Sbjct: 525  GIVIAGTDLVDIVPVYKDSNSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            ++G++VD + + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIK+EM++Q+E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAA+Y 
Sbjct: 705  DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            VISYQTA++K +YP EFL A + LE++N +KI  F Q+A+   I+I+ P++N     F V
Sbjct: 765  VISYQTAYLKANYPAEFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSV 824

Query: 831  G------------------------------------DNRIYYSLAAIKGVGTTTARHIM 854
                                                    I ++L AIKGV     + + 
Sbjct: 825  QFSDTVIPHSVKPVIPRLDRGIQEISKDTVVKPRYNIAGAIIFALGAIKGVTPNFGKLVT 884

Query: 855  EASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
            +       F S+ DF  R+  K +N ++LE+L+ +G  D    +R+QLL S+  +  Y+ 
Sbjct: 885  DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYST 944

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
               + + +   ++    K +      L      + +     E   +G + S HPL  Y+ 
Sbjct: 945  AYHEEQESNQFSL---IKVSSLSPTILVSSDYADKNTLAFYEFEAMGLFISNHPLTEYQE 1001

Query: 974  ILRKMGIKGYEES-VATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            I  ++ I    +       G   + LA ++  K  + + +G R   +  S+P   +E + 
Sbjct: 1002 IFSRLNILNTADLHNNLPDGTNRVNLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSI 1060

Query: 1032 F 1032
            F
Sbjct: 1061 F 1061


>gi|34581196|ref|ZP_00142676.1| DNA polymerase III alpha chain [Rickettsia sibirica 246]
 gi|28262581|gb|EAA26085.1| DNA polymerase III alpha chain [Rickettsia sibirica 246]
          Length = 1181

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 404/1081 (37%), Positives = 607/1081 (56%), Gaps = 79/1081 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  +++  ++++ PAI + D  NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKKGLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I                     I+L+     GY+ L++L S  +  +  K  
Sbjct: 63   PIHGVILNIKYD------------IDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L E   EGLI L   + G + +     + + A       +++ GDR Y  + R
Sbjct: 111  DHIGFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEEQAMLFARKLQEILGDRFYFEIMR 169

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +    E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  
Sbjct: 170  HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y ++  EM+ +FSDLP A++NTV +  RC F     A      +          E
Sbjct: 230  VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYF-----AAHANPPMLPNFATKDISE 284

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360
             + ++  A  GL  RLA    ++    +       +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TDLIKKDAKEGLLARLATKFKSENIALENQEALKTEYFARLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405  DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464

Query: 481  NDPAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PVS  QA+ +      A   +           +  +++ S  LEGL+RH+STHAA
Sbjct: 465  FSAVNPVSLEQAMREVPELANAAKGNGLYNLDGEAELIKLVIDTSLILEGLHRHSSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  SD+ V  ++MK+ E AGLIKFDFLGL+TLT++      L 
Sbjct: 525  GIVIAGTDLVDIVPVYKDANSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            ++G++VD + + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLQQPDYLHELLQPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIK+EM++Q+E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAA+Y 
Sbjct: 705  DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            VISYQTA++K +YP  FL A + LE++N +KI  F Q+A+   I+I+ P++N     F V
Sbjct: 765  VISYQTAYLKANYPAAFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSV 824

Query: 831  G------------------------------------DNRIYYSLAAIKGVGTTTARHIM 854
                                                    I ++L AIKGV     + + 
Sbjct: 825  KFSDTVIPHSVKPVIPRLDRGIQEISKDTVVKPRCDIAGAIIFALGAIKGVTPNFGKLVT 884

Query: 855  EASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
            +       F S+ DF  R+  K +N ++LE+L+ +G  D    +R+QLL S+  +  Y+ 
Sbjct: 885  DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYST 944

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
               + + +   ++    K +      L      + +     E   +G + S HPL  Y+ 
Sbjct: 945  AYHEEQESNQFSL---IKVSSLSPTILVSSDYADKNTLAFYEFEAMGLFISNHPLTEYQE 1001

Query: 974  ILRKMGIKGYEES-VATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            I  ++ I    +       G   + LA ++  K  + + +G R   +  S+P   +E + 
Sbjct: 1002 IFSRLNILNIADLHNNLPDGTNRVNLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSI 1060

Query: 1032 F 1032
            F
Sbjct: 1061 F 1061


>gi|261418242|ref|YP_003251924.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC61]
 gi|319767798|ref|YP_004133299.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC52]
 gi|261374699|gb|ACX77442.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC61]
 gi|317112664|gb|ADU95156.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC52]
          Length = 1092

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 381/1025 (37%), Positives = 569/1025 (55%), Gaps = 51/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL V S YSL + A ++  +  +       A+A+TD N L+ A+ F ++    GI+PI
Sbjct: 2    FVHLHVLSGYSLFQSAAAVEALAARAKQLGYQALALTDRNVLYGAIPFYRECKQNGIRPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG   D+ +                   +VLL +  EGY+ L+E+ + M + +    +  
Sbjct: 62   IGVTADVAL------------SGEEAFPLVLLAANEEGYRHLLEISTMMQMGE----TKH 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +  + L  + + G+I +T GS G ++        + A++ L  + +LF  RLYV +QR  
Sbjct: 106  MEEAALVRL-SGGIIAITPGSEGRVESLVAAGEWERAKEALGRYHQLFPGRLYVAVQRGE 164

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                  E+ ++QLA    +P+VATN+  ++   D  A   L A+    +++         
Sbjct: 165  QTRAPYEAGLLQLAEETGVPIVATNDVRYVERSDAVAWRCLQAIGRGALLAD---IEDDN 221

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              YL    EM   F+DLPEALEN++ IA +C   ++     LP +   + +      ++ 
Sbjct: 222  GRYLAGPEEMARRFADLPEALENSLAIADQCELQIEFGGWRLPAYPVPDGE----TADSY 277

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  +  GL  R+           + Y +RL  EL+VI  + FS YFLIVAD + +A++ 
Sbjct: 278  LRRLSEQGLARRVP-------SADERYWRRLSHELDVIQSLHFSDYFLIVADVLAYARRR 330

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I  GPGRGS AGS+ AYAL+ITD+DP+++ LLFERFLNP+R S+PD D+DF   RR+EV
Sbjct: 331  GILTGPGRGSAAGSLVAYALSITDVDPIKYGLLFERFLNPERASVPDIDLDFPDGRREEV 390

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV +KYG +RVAQIITFG+  AKAALR+  +AL +P  + +++  L+P+  +  +   
Sbjct: 391  IRYVADKYGRDRVAQIITFGTFGAKAALRETAKALGVPGREAEQVAALLPSKQSVTLRQW 450

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
              A+ + FR A  A P     L ++QKLEGL RH S HAAG++I   PL + VP+     
Sbjct: 451  H-AESAAFRRAVAAVPQGREWLAVAQKLEGLPRHTSIHAAGVIISPEPLVRFVPLQ-PSH 508

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETY 609
             + P+TQ+ M  +E  GL+K DFLGL+TLTL+++ +     Q G   D+  +P +D +TY
Sbjct: 509  GEWPLTQYAMGALEALGLLKIDFLGLRTLTLIEQIVRLIERQTGKPFDIRTLPLNDEKTY 568

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T GIFQLESSGM++ L  ++P  +ED++A+ +LYRPGP+  I VY  RK G+E
Sbjct: 569  ALLGAGDTNGIFQLESSGMKRVLAELRPSQLEDVVAVNALYRPGPMQMIPVYIRRKRGEE 628

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +   HP ++ +L  T GV+IYQEQ+MQIA  L+G+SL +ADVLRRA+ KK K  + KQ 
Sbjct: 629  PVSYAHPDLETILAPTYGVLIYQEQIMQIAARLAGFSLGQADVLRRAVAKKEKALLAKQH 688

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F++G   NG  K +A  ++  + +FADYGFN+SHA +YA++SY  A+MK HYP+ F A
Sbjct: 689  QAFVAGCVANGYPKAVAEELYRHIVRFADYGFNRSHAVSYALLSYAMAYMKAHYPLCFYA 748

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +T    + EK   +  +A +  I ++ PSVN       V  + I   LA +K VG + 
Sbjct: 749  VMLTNASGDREKAAVYYWEAARKGINVLLPSVNKSGFRSFVEGSAIRLGLAMVKQVG-SA 807

Query: 850  ARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            A+ I+E    + PF    DF  R+  K L R  LE+L+  GA D FG  R  LL S+D  
Sbjct: 808  AKLIVEERKANGPFADFFDFAVRLLPKGLGRPALEALISVGAFDEFGADRASLLASIDIA 867

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             ++AQWV+           A E G  S K           S R   E   LGF  + HP 
Sbjct: 868  IEHAQWVQ-----------ALEAGGLSLKPKYAAAHSWPLSERRRREAEFLGFAVTPHPA 916

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             V +P+L+  G     +      G +  +   VV  ++ +T++G  + + T  + + E E
Sbjct: 917  AVCRPLLQAAGAVCVADVQ----GPSTVVGGAVVRIRKTRTKQGEEMAFFTVGDESGELE 972

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 973  AVAFP 977


>gi|229587140|ref|YP_002845641.1| DNA polymerase III subunit alpha [Rickettsia africae ESF-5]
 gi|228022190|gb|ACP53898.1| DNA polymerase III alpha chain [Rickettsia africae ESF-5]
          Length = 1181

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 403/1081 (37%), Positives = 606/1081 (56%), Gaps = 79/1081 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  +++  ++++ PAI + D  NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALCAVKKGLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I                     I+L+     GY+ L++L S  +  +  K  
Sbjct: 63   PIHGVILNIKYD------------IDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L E   EGLI L   + G + +     +   A       +++ GDR Y  + R
Sbjct: 111  DHIDFEDLIEY-QEGLIGLCCYTDGIVGKCLLARNEAKAMLFARKLQEILGDRFYFEIMR 169

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +    E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  
Sbjct: 170  HELPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYLDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y ++  EM+ +FSDLP A++NTV +  RC F     A      +          E
Sbjct: 230  VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYF-----AAHANPPMLPNFATKDISE 284

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360
             + ++  A  GL  RLA    ++    +       +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TDLIKKDAKEGLLARLATKFKSENIALENQEALKTEYFARLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405  DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464

Query: 481  NDPAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PVS  QA+ +      A   +           +  +++ S  LEGL+RH+STHAA
Sbjct: 465  FSAVNPVSLEQAMREVPELANAAKGNGLYNLDGEAELIKLVIDTSLILEGLHRHSSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  SD+ V  ++MK+ E AGL+KFDFLGL+TLT++      L 
Sbjct: 525  GIVIAGTDLVDIVPVYKDANSDMLVVGYSMKYSEIAGLVKFDFLGLQTLTVITDCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            ++G++VD + + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLQQPDYLHELLQPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIK+EM++Q+E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAA+Y 
Sbjct: 705  DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAASYG 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            VISYQTA++K +YP  FL A + LE++N +KI  F Q+A+   I+I+ P++N     F V
Sbjct: 765  VISYQTAYLKANYPAAFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSV 824

Query: 831  G------------------------------------DNRIYYSLAAIKGVGTTTARHIM 854
                                                    I ++L AIKGV     + + 
Sbjct: 825  KFSDTVIPHSVKPVIPRLDRGIQEISKDTVVKPRCDIAGAIIFALGAIKGVTPNFGKLVT 884

Query: 855  EASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
            +       F S+ DF  R+  K +N ++LE+L+ +G  D    +R+QLL S+  +  Y+ 
Sbjct: 885  DERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLLSSIPKLLSYST 944

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
               + + +   ++    K +      L      + +     E   +G + S HPL  Y+ 
Sbjct: 945  AYHEEQESNQFSL---IKVSSLSPTILVSSDYADKNTLAFYEFEAMGLFISNHPLTEYQA 1001

Query: 974  ILRKMGIKGYEES-VATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            I  ++ I    +       G   + LA ++  K  + + +G R   +  S+P   +E + 
Sbjct: 1002 IFSRLNILNTADLHNNLPDGTNRVNLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSI 1060

Query: 1032 F 1032
            F
Sbjct: 1061 F 1061


>gi|148547815|ref|YP_001267917.1| error-prone DNA polymerase [Pseudomonas putida F1]
 gi|148511873|gb|ABQ78733.1| DNA polymerase III, alpha subunit [Pseudomonas putida F1]
          Length = 1026

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 286/1037 (27%), Positives = 457/1037 (44%), Gaps = 78/1037 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P +  L   S++S   GA S + +  +       A+AITD   L   +   Q A    
Sbjct: 2    NTPGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKVHQ 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ I+G ++ +                   P +VLLV    GYQ L  L++R     + K
Sbjct: 62   LRLIVGSEVQLCDG----------------PKLVLLVENLTGYQNLCALITRARRRAE-K 104

Query: 127  QSVRICLSWLQEIGTEGLIMLT-GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
             + ++    L  +  +GL+ L     SG                     + +F +RL++ 
Sbjct: 105  GAYQLFRDDLL-LHHQGLLALWVAADSGD-------------TATGAWLRSVFAERLWLA 150

Query: 186  LQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +  HRG D   R  ++  LA    +  VA  +            D + A+     VS+  
Sbjct: 151  VHLHRGSDDAMRLQRLRALAADVGIRAVACGDVHMHVRGRRALQDCMTAIRQHCQVSEAG 210

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R     +     RS+         + L  T+ IARRC F L       PR +  E     
Sbjct: 211  RFLF-ANGERHLRSQAQLAELYPLDLLAETLVIARRCQFDLSELNYQYPRELVPEG---- 265

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + LR     G+ +R   G       +   R  L  EL +I  + +  YFL V D +
Sbjct: 266  HTPASWLRELCEQGMPLRWPGG------PSGKVRAVLAKELGLIEELGYESYFLTVHDIV 319

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+   I    GRGS A SV  + L IT++DP++  LLFERFL+ +R   PD D+DF  
Sbjct: 320  AFARSQRIL-CQGRGSAANSVVCFVLGITELDPMKHHLLFERFLSRERNEPPDIDVDFEH 378

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVI+YV  +YG  R A      +  A  A+RDV R L +P  QVD L K       
Sbjct: 379  DRREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARVLGLPADQVDALAKCCGRWSD 438

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 Q +A+           PS+ R+L ++ +L G  RH S H  G VI  +PL QLVP
Sbjct: 439  RIPDDQRLAE----AGFEAGSPSLRRVLVLAGELIGFPRHLSQHPGGFVISQQPLDQLVP 494

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPF 603
            +      +  V Q++   ++  GL+K D L L  L+ L++  D     RG  + L+ IP 
Sbjct: 495  VENAAMPERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDLLQHHRGRHLTLATIPS 554

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662
            +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+  
Sbjct: 555  EDPATYAMISRAETMGVFQIESRAQMAMLPRLRPQKFYDLVIEVAIVRPGPIQGDMVHPY 614

Query: 663  -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R+  +E +    P +  + + T GV ++QEQVM++A + + Y+  EAD LRR+M    
Sbjct: 615  LRRRLKQEPVTYPSPQLKEVFERTLGVPLFQEQVMELAMVAADYTPGEADQLRRSMAAWK 674

Query: 722  KEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            +    +  +ER + G  +NG +   A  IFE +  F  YGF +SHAA++A++ Y ++W+K
Sbjct: 675  RHGGLEPHRERLVQGMLRNGYTLAFAERIFEQIKGFGSYGFPESHAASFALLCYASSWLK 734

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RI 835
             H P  F  A +           +  Q+AR+  I++ P  V     D  +  +      I
Sbjct: 735  CHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSDWDCTLEPDAEGTLAI 794

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L  ++G+  T AR + +A A +P+ ++ED C R     L+ R    L   GAL    
Sbjct: 795  RMGLRLVRGLAETDARRVQQARAQRPWRNVEDLCLRA---GLDARARARLADGGALRALA 851

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R Q    +  +                 +FA  +    + + L    V         +
Sbjct: 852  SDRHQARWQVAAV------------QPQLPLFADVQALPEEPVQLP---VPTVGEDLMAD 896

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
             + LG     HPL + +  LR +G +   E      G+NI +A +VV +Q+ +T  G  +
Sbjct: 897  YQTLGTTLGPHPLALLRSRLRALGCRSSSELQGVEHGDNIAVAGLVVGRQRPQTASG--V 954

Query: 1016 GWVTFSEPAKEYEANFF 1032
             +VT  +         +
Sbjct: 955  TFVTLEDEHGMVNVVVW 971


>gi|118464788|ref|YP_883471.1| error-prone DNA polymerase [Mycobacterium avium 104]
 gi|118166075|gb|ABK66972.1| DNA polymerase III, alpha subunit, putative [Mycobacterium avium 104]
          Length = 1093

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 278/1038 (26%), Positives = 480/1038 (46%), Gaps = 60/1038 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S  +  L  HS++S L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 54   SSVPYAELHAHSAFSFLDGASTPEEMVEEAARLDLRALALTDHDGLYGAVRFAEAAAELD 113

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ + G +L +        + + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 114  VRTVFGAELSLGP------SARTEAPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 167

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
               R  L  L E       +LTG   G + +A        A + L      FG  R+ + 
Sbjct: 168  GKPRYDLDALTEAAGGHWHILTGCRKGHVRQALSEGGPDEAARALADLVDRFGAARVSIE 227

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L RH    D  R + +  LA    + +VAT  + F           + A+     +    
Sbjct: 228  LTRHGQPLDDERNAALAALAPRFGVGVVATTGAHFAGPSRRRLAMAVGAIRARESLDSAA 287

Query: 245  RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     +L++  EM  +F+  PEA+    E+  +C+F L + AP LP F   +    
Sbjct: 288  GWLAPLGGSHLRSGEEMARLFAWCPEAVTAAAELGEQCAFGLALIAPRLPPFDVPDG--- 344

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E++ LR   + G   R          HA     +++ EL VIA+++F GYFL+V D 
Sbjct: 345  -HTEDSWLRQLTMTGARDRYG-----SPEHAPRAYAQIEHELKVIAQLQFPGYFLVVHDI 398

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
             ++ ++NNI    GRGS A S   YAL +T +DP+   LLFERFL+P R   PD D+D  
Sbjct: 399  ARFCRENNIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDMDIE 457

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+R++VI+YV ++YG +  AQ+    + + K A+RD+ RAL     Q D   K I +  
Sbjct: 458  SDQREKVIQYVYDRYGRDYAAQVANVITYRGKIAVRDMARALGFSQGQQDAWSKQISSWS 517

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                    +AD               ++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 518  G-------LADSPDVEGI------PPQVIDLANQVRNLPRHLGIHSGGMVICDRPIADVC 564

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+      +  V Q++       GL+KFD LGL  L+ L  ++D +A+   ++VDL+ + 
Sbjct: 565  PVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGIEVDLARLD 624

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660
              +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  
Sbjct: 625  LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 684

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R+NG + ++  HP ++P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAM  K
Sbjct: 685  YIRRRNGVDPVLYDHPSMEPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 744

Query: 720  KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            +  E M + + RF  G    +G    +    +E L  FA++GF +SHA ++A + + ++W
Sbjct: 745  RSTERMRRLRGRFYDGMRALHGAPDEVIDRTYEKLEAFANFGFPESHALSFASLVFYSSW 804

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836
             K H+P  F AA +  +       +    DAR+  + +  P VN       +      + 
Sbjct: 805  FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAHATLENAGTEVR 864

Query: 837  YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L A++ +G   A  +++    + PF SL D  +R+   +L+    E+L  AGA  CFG
Sbjct: 865  LGLGAVRHIGDDLAEKLVQERKANGPFASLLDLTARL---QLSVPQTEALATAGAFGCFG 921

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             SR +                   T + + +      +      +      +       +
Sbjct: 922  MSRRE----------ALWAAGAAATQRPDRLPGVGSSS-----HIPALPGMSELELAAAD 966

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     +P    +  L  MG+       +   G+ + +A  V  +Q+  T +G  +
Sbjct: 967  VWATGISPDSYPTQFLRDDLDAMGVVPAARLGSVPDGDRVLIAGAVTHRQRPGTAQG--V 1024

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             ++   +          P
Sbjct: 1025 TFLNLEDETGMVNVLCTP 1042


>gi|145225469|ref|YP_001136147.1| error-prone DNA polymerase [Mycobacterium gilvum PYR-GCK]
 gi|145217955|gb|ABP47359.1| error-prone DNA polymerase, DnaE-like protein [Mycobacterium gilvum
            PYR-GCK]
          Length = 1087

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 278/1036 (26%), Positives = 475/1036 (45%), Gaps = 60/1036 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            +S  +  L  HS+YS L+GA +   ++++ +     A+A+TD + L+  + F++ A    
Sbjct: 48   RSMPYAELHAHSAYSFLDGASTPEELVEEASRLGLRALALTDHDGLYGVVRFAEAAKELD 107

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +  + G +L +       +      P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 108  VDTVFGAELSLGGGTRTDV------PDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 161

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
              +R     L E       +LTG   G + +A        AE  L      FG +R+ V 
Sbjct: 162  GVLRYDFDALTEAAGGHWQILTGCRKGHVRQALLRGGDSAAEAALADLVDRFGRERVTVE 221

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVVSQK 243
            L  H    D  R + +  LA    L ++AT  + F           + A+   +++    
Sbjct: 222  LTHHGHPLDDERNAALAALAPRFGLTVIATTAAHFAEPSRGRLAMAMGAIRARNSIDEAA 281

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     +L++  EM  +F+  PE +    ++  +C+F L + AP LP F        
Sbjct: 282  GYLAPLGGSHLRSGEEMARVFAHCPEVVTAAADLGEQCAFGLALIAPQLPPFEVPAG--- 338

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E + LR+  + G   R      A   +AQ     ++ EL VI ++ F GYFL+V D 
Sbjct: 339  -HTENSWLRHLVMQGARERYGPPERASRAYAQ-----IEHELRVIEQLNFPGYFLVVHDI 392

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
             ++ ++N I    GRGS A S   YAL +T++DP+   LLFERFL+P R   PD DID  
Sbjct: 393  TRFCRENAILS-QGRGSAANSAVCYALKVTNVDPIANGLLFERFLSPARDGPPDIDIDIE 451

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D R++ I+YV  +YG E  AQ+    + + ++A+RD+ RAL     Q D   K I    
Sbjct: 452  SDLREKAIQYVYERYGREYAAQVANVITYRGRSAVRDMARALGFSQGQQDAWSKQISQW- 510

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             +      + D                +++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 511  GNLADATHVEDIPE------------PVIDLAMQISHLPRHMGIHSGGMVICDRPIADVC 558

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIP 602
            P+      +  V Q++       GL+KFD LGL  L+ L  ++D +A+    +VDL+ + 
Sbjct: 559  PVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGLEVDLAKLD 618

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660
              +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  
Sbjct: 619  LSEPAVYEMLQRADSVGVFQVESRAQMATLPRLKPRMFYDLVVEVALIRPGPIQGGSVHP 678

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y  R+NG+E +   HP ++  L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAMG K
Sbjct: 679  YIKRRNGQEPVTYEHPSMERALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 738

Query: 721  IKEEMDK--QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
               E  +  +   F   A  +GIS  +A  I+E L  FA++GF +SH+ ++A + + ++W
Sbjct: 739  RSTEKMRRLRGRFFEGMAELHGISGDVARRIYEKLEAFANFGFPESHSLSFASLVFYSSW 798

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--RIY 836
             K H+P  F AA +  +       +    DAR+  + +  P VN       + ++   + 
Sbjct: 799  FKLHHPAAFCAALLRAQPMGFYSPQTLVADARRHGVDVHGPDVNASLAHATLENHGLDVR 858

Query: 837  YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L +I+ +G   A+ ++E    + PF SL D   RV   +L     E+L  AGAL CFG
Sbjct: 859  LGLGSIRHIGDELAQRLVEDRKLNGPFVSLTDLTRRV---QLTVPQTEALATAGALGCFG 915

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R + L +       A     +R     +              +              +
Sbjct: 916  ITRREGLWAAG----AAATERPDRLPGVGS-----------SSQVPSLPGMTELELTAAD 960

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     +P +  +  L  MG+   +  ++   G  + +A  V  +Q+  T +G  +
Sbjct: 961  VWATGVSPDRYPTEFLREDLDAMGVVPADRLLSVRDGTRVLVAGAVTHRQRPATAQG--V 1018

Query: 1016 GWVTFSEPAKEYEANF 1031
             ++   +         
Sbjct: 1019 TFLNLEDETGMVNVLC 1034


>gi|315445823|ref|YP_004078702.1| DNA polymerase III subunit alpha [Mycobacterium sp. Spyr1]
 gi|315264126|gb|ADU00868.1| DNA polymerase III, alpha subunit [Mycobacterium sp. Spyr1]
          Length = 1099

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 278/1036 (26%), Positives = 475/1036 (45%), Gaps = 60/1036 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            +S  +  L  HS+YS L+GA +   ++++ +     A+A+TD + L+  + F++ A    
Sbjct: 60   RSMPYAELHAHSAYSFLDGASTPEELVEEASRLGLRALALTDHDGLYGVVRFAEAAKELD 119

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +  + G +L +       +      P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 120  VDTVFGAELSLGGGTRTDV------PDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 173

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
              +R     L E       +LTG   G + +A        AE  L      FG +R+ V 
Sbjct: 174  GVLRYDFDALTEAAGGHWQILTGCRKGHVRQALLRGGDSAAEAALADLVDRFGRERVTVE 233

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVVSQK 243
            L  H    D  R + +  LA    L ++AT  + F           + A+   +++    
Sbjct: 234  LTHHGHPLDDERNAALAALAPRFGLTVIATTAAHFAEPSRGRLAMAMGAIRARNSIDEAA 293

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     +L++  EM  +F+  PE +    ++  +C+F L + AP LP F        
Sbjct: 294  GYLAPLGGSHLRSGEEMARVFAHCPEVVTAAADLGEQCAFGLALIAPQLPPFEVPAG--- 350

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E + LR+  + G   R      A   +AQ     ++ EL VI ++ F GYFL+V D 
Sbjct: 351  -HTENSWLRHLVMQGARERYGPPERASRAYAQ-----IEHELRVIEQLNFPGYFLVVHDI 404

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
             ++ ++N I    GRGS A S   YAL +T++DP+   LLFERFL+P R   PD DID  
Sbjct: 405  TRFCRENAILS-QGRGSAANSAVCYALKVTNVDPIANGLLFERFLSPARDGPPDIDIDIE 463

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D R++ I+YV  +YG E  AQ+    + + ++A+RD+ RAL     Q D   K I    
Sbjct: 464  SDLREKAIQYVYERYGREYAAQVANVITYRGRSAVRDMARALGFSQGQQDAWSKQISQW- 522

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
             +      + D                +++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 523  GNLADATHVEDIPE------------PVIDLAMQISHLPRHMGIHSGGMVICDRPIADVC 570

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIP 602
            P+      +  V Q++       GL+KFD LGL  L+ L  ++D +A+    +VDL+ + 
Sbjct: 571  PVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGLEVDLAKLD 630

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660
              +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  
Sbjct: 631  LSEPAVYEMLQRADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 690

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y  R+NG+E +   HP ++  L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAMG K
Sbjct: 691  YIKRRNGQEPVTYEHPSMERALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 750

Query: 721  IKEEMDK--QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
               E  +  +   F   A  +GIS  +A  I+E L  FA++GF +SH+ ++A + + ++W
Sbjct: 751  RSTEKMRRLRGRFFEGMAELHGISGDVARRIYEKLEAFANFGFPESHSLSFASLVFYSSW 810

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--RIY 836
             K H+P  F AA +  +       +    DAR+  + +  P VN       + ++   + 
Sbjct: 811  FKLHHPAAFCAALLRAQPMGFYSPQTLVADARRHGVDVHGPDVNASLAHATLENHGLDVR 870

Query: 837  YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L +I+ +G   A+ ++E    + PF SL D   RV   +L     E+L  AGAL CFG
Sbjct: 871  LGLGSIRHIGDELAQRLVEDRKLNGPFVSLTDLTRRV---QLTVPQTEALATAGALGCFG 927

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R + L +       A     +R     +              +              +
Sbjct: 928  ITRREGLWAAG----AAATERPDRLPGVGS-----------SSQVPSLPGMTELELTAAD 972

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     +P +  +  L  MG+   +  ++   G  + +A  V  +Q+  T +G  +
Sbjct: 973  VWATGVSPDRYPTEFLREDLDAMGVVPADRLLSVRDGTRVLVAGAVTHRQRPATAQG--V 1030

Query: 1016 GWVTFSEPAKEYEANF 1031
             ++   +         
Sbjct: 1031 TFLNLEDETGMVNVLC 1046


>gi|56421279|ref|YP_148597.1| DNA-directed DNA polymerase III subunit alpha [Geobacillus
            kaustophilus HTA426]
 gi|56381121|dbj|BAD77029.1| DNA-directed DNA polymerase III alpha subunit [Geobacillus
            kaustophilus HTA426]
          Length = 1091

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 376/1025 (36%), Positives = 570/1025 (55%), Gaps = 51/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL V S YSL + A ++  +  +       A+A+TD N L+ A+ F ++    GI+PI
Sbjct: 3    FVHLHVLSGYSLFQSAAAVEALAARAKQLGYQALALTDRNVLYGAIPFYRECKQNGIRPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG   D+ +                   +VLL +  EGY+ L+E+ + M + +    +  
Sbjct: 63   IGVTADVAL------------SGEEAFPLVLLAANEEGYRHLLEISTMMQMGE----TKH 106

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +  + L  + + G+I +T GS G ++        + A++ L  + +LF  RLYV +QR  
Sbjct: 107  MEEAALVRL-SGGIIAITPGSEGRVESLVAAGEWERAKEALGRYHQLFPGRLYVAVQRGE 165

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                  E+ ++QL     +P+VATN+  ++   D  A   L A+    +++         
Sbjct: 166  QTRAPYEAGLLQLVEETGVPIVATNDVRYVERSDAVAWRCLQAIGRGALLAD---IEDDN 222

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              YL    EM   F+DLPEALEN++ IA +C   ++     LP +   + +      ++ 
Sbjct: 223  GRYLAGPEEMARRFADLPEALENSLAIADQCELQIEFGGWRLPAYPVPDGE----TADSY 278

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  +  GL  R+           + Y +RL  EL+VI  + FS YFLIVAD + +A++ 
Sbjct: 279  LRRLSEQGLARRVP-------SADERYWRRLSHELDVIQSLHFSDYFLIVADVLAYARRR 331

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I  GPGRGS AGS+ AYAL+ITD+DP+++ LLFERFLNP+R S+PD D+DF  DRR+EV
Sbjct: 332  GILTGPGRGSAAGSLVAYALSITDVDPIKYGLLFERFLNPERASVPDIDLDFPDDRREEV 391

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV +KYG +RVAQIITFG+  AKAALR+  +AL +P  + +++  L+P+  +  +   
Sbjct: 392  IRYVADKYGRDRVAQIITFGTFGAKAALRETAKALGVPGREAEQVAALLPSKQSVTLRQW 451

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
              A+ + FR A  A P     L ++QKLEGL RH S HAAG++I   PL + VP+     
Sbjct: 452  H-AESAAFRRAVAAVPQGREWLAVAQKLEGLPRHTSIHAAGVIISPEPLVRFVPLQ-PSH 509

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETY 609
             + P+TQ+ M  +E  GL+K DFLGL+TLTL+++ +     Q G   D+  +P +D +TY
Sbjct: 510  GEWPLTQYAMGALEALGLLKIDFLGLRTLTLIEQIVRLIERQTGKPFDIRTLPLNDEKTY 569

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T GIFQLESSGM++ L  ++P  +ED++A+ +LYRPGP+  I VY  RK G+E
Sbjct: 570  ALLGAGDTNGIFQLESSGMKRVLAELRPSQLEDVVAVNALYRPGPMQMIPVYIRRKRGEE 629

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +   HP ++ +L  T GV+IYQEQ+MQIA  L+G+SL +ADVLRRA+ KK K  + +Q+
Sbjct: 630  PVSYAHPDLETILAPTYGVLIYQEQIMQIAARLAGFSLGQADVLRRAVAKKEKALLAEQR 689

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F++G   NG  K +A  ++  + +FADYGFN+SHA +YA++SY  A+MK HYP+ F A
Sbjct: 690  QAFVAGCVANGYPKAVAEELYRHIVRFADYGFNRSHAVSYALLSYAMAYMKAHYPLCFYA 749

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +T    + EK   +  +A +  I ++ PSVN       V  + I   LA +K VG + 
Sbjct: 750  VMLTNASGDREKAAVYYWEAARKGINVLLPSVNKSGFRSSVEGSAIRLGLAMVKQVG-SA 808

Query: 850  ARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            A+ I+E    + PF    DF +R+  K L R  LE+L+  GA D FG  R  LL S+D  
Sbjct: 809  AKLIVEERKANGPFADFFDFAARLLPKGLGRPALEALISVGAFDEFGADRASLLASIDIA 868

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             ++AQWV+  +     ++          K           S R   E   LGF  + HP 
Sbjct: 869  IEHAQWVQALQAGG-LSL----------KPKYAAAHSWPLSERRRREAEFLGFAVTPHPA 917

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             V +P+L+  G     +      G +  +   VV  ++ +T++G  + + T  + + E E
Sbjct: 918  AVCRPLLQAAGAVCVADVQ----GPSTVVGGAVVRIRKTRTKQGEEMAFFTVGDESGELE 973

Query: 1029 ANFFP 1033
            A  FP
Sbjct: 974  AVAFP 978


>gi|313498875|gb|ADR60241.1| DnaE2 [Pseudomonas putida BIRD-1]
          Length = 1026

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 285/1035 (27%), Positives = 455/1035 (43%), Gaps = 78/1035 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S   GA S + +  +       A+AITD   L   +   Q A    ++
Sbjct: 4    PGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKVHQLR 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G ++ +                   P +VLLV    GYQ L  L++R     + K +
Sbjct: 64   LIVGSEVQLCDG----------------PKLVLLVENLTGYQNLCALITRARRRAE-KGA 106

Query: 129  VRICLSWLQEIGTEGLIMLT-GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             ++    L  +  +GL+ L     SG                     + +F +RL++ + 
Sbjct: 107  YQLFRDDLL-LHHQGLLALWVAADSGDTATGV-------------WLRSVFAERLWLAVH 152

Query: 188  RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             HRG D   R  ++  LA    +  VA  +            D + A+     VS+  R 
Sbjct: 153  LHRGSDDAMRLQRLRALAADVGIRAVACGDVHMHVRGRRALQDCMTAIRQHCQVSEAGRF 212

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +     RS+         + L  T+ IARRC F L       PR +  E       
Sbjct: 213  LF-ANGERHLRSQAQLAELYPLDLLAETLVIARRCQFDLSELNYQYPRELVPEG----HT 267

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR     G+ +R   G       +   R  L  EL +I  + +  YFL V D + +
Sbjct: 268  PASWLRELCEQGMPLRWPDG------PSGKVRAVLAKELGLIEELGYESYFLTVHDIVAF 321

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I    GRGS A SV  + L IT++DP++  LLFERFL+ +R   PD D+DF  DR
Sbjct: 322  ARSQRIL-CQGRGSAANSVVCFVLGITELDPMKHHLLFERFLSRERNEPPDIDVDFEHDR 380

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+YV  +YG  R A      +  A  A+RDV R L +P  QVD L K         
Sbjct: 381  REEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARVLGLPADQVDALAKCCGRWSDRI 440

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               Q +A+           PS+ R+L ++ +L G  RH S H  G VI  +PL QLVP+ 
Sbjct: 441  PDDQRLAE----AGFEAGSPSLRRVLVLAGELIGFPRHLSQHPGGFVISQQPLDQLVPVE 496

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDD 605
                 +  V Q++   ++  GL+K D L L  L+ L++  D     RG  + L+ IP +D
Sbjct: 497  NAAMPERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDLLQHHRGRHLTLATIPSED 556

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
              TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    
Sbjct: 557  PATYAMISRAETMGVFQIESRAQMAMLPRLRPQKFYDLVIEVAIVRPGPIQGDMVHPYLR 616

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R+  +E +    P +  + + T GV ++QEQVM++A + + Y+  EAD LRR+M    + 
Sbjct: 617  RRLKQEPVTYPSPQLKEVFERTLGVPLFQEQVMELAMVAADYTPGEADQLRRSMAAWKRH 676

Query: 724  EM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
               +  +ER + G  +NG +   A  IFE +  F  YGF +SHAA++A++ Y ++W+K H
Sbjct: 677  GGLEPHRERLVQGMLRNGYTLAFAERIFEQIKGFGSYGFPESHAASFALLCYASSWLKCH 736

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYY 837
             P  F  A +           +  Q+AR+  I++ P  V     D  +  +      I  
Sbjct: 737  EPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSDWDCTLEPDAQGTLAIRM 796

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  ++G+    AR + +A A +P+ ++ED C R     L+ R    L   GAL      
Sbjct: 797  GLRLVRGLAEADARRVQQARAQRPWRNVEDLCLRA---GLDARARARLADGGALRALASD 853

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R Q    +  +                 +FA  +    + + L    V         + +
Sbjct: 854  RHQARWQVAAV------------QPQLPLFADVQALPEEPVQLP---VPTVGEDLMADYQ 898

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             LG     HPL + +  LR +G +   E      G+NI +A +VV +Q+ +T  G  + +
Sbjct: 899  TLGTTLGPHPLALLRSRLRALGCRSSSELQGVEHGDNIAVAGLVVGRQRPQTASG--VTF 956

Query: 1018 VTFSEPAKEYEANFF 1032
            VT  +         +
Sbjct: 957  VTLEDEHGMVNVVVW 971


>gi|257784701|ref|YP_003179918.1| DNA polymerase III, alpha subunit [Atopobium parvulum DSM 20469]
 gi|257473208|gb|ACV51327.1| DNA polymerase III, alpha subunit [Atopobium parvulum DSM 20469]
          Length = 1278

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 329/1040 (31%), Positives = 524/1040 (50%), Gaps = 78/1040 (7%)

Query: 61   KACAAG-----IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            +A  A      I+PI GC+    + D ++   +          ++LL     GY  L+++
Sbjct: 114  EAVKANKPSPLIKPIFGCEAYFILDDCIEKGTK-----QVRYHLILLAKNETGYVNLMKM 168

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +S     +      R  L  L+    EG+I  +   SG I R  F    + AE+    ++
Sbjct: 169  MSEAGSKEMFYYKPRTTLEMLKRYH-EGIICTSACVSGIIPRMLFEGRPEEAERWAKIYQ 227

Query: 176  KLFGDRLYVNLQRHRGYD--------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
             +FGD  Y+ +Q H   D        R    ++V++ +   + +VATN++ +L++ED   
Sbjct: 228  DIFGDDFYLEIQDHGLSDPSWGGYTDRTLAERIVKMGHDLGIKVVATNDNHYLTKEDASV 287

Query: 228  HDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
             D+   +     V  ++R R+T  + YLK+  EM  IFS  PEA+ENT+E+A +C++ L 
Sbjct: 288  QDIASCIGSGARVDDENRKRMTGSEFYLKSEQEMRQIFSWCPEAIENTIEVANKCNYELD 347

Query: 287  VHAPILPRFIEKECDDI--QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
                        +  D+   +  E   R +   GL  R          +  + + R ++E
Sbjct: 348  -----WTHMYLPKFPDLAEGETSEERFRKECELGLARRYGDDWQNVVINEINVKDRFEYE 402

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
             ++I +  F+ YFLIV ++++WAK+N I VGPGRGS AG++ AYA+ IT  DPL   L+F
Sbjct: 403  YDIICKKGFADYFLIVQEYVRWAKENGIGVGPGRGSAAGAIVAYAMDITSFDPLENGLMF 462

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERFL+P R  MPD D+DF  +RR EV+ +V+  YG ERV+ +IT+ +++AK A+ D  R 
Sbjct: 463  ERFLSPQRSEMPDIDMDFDDERRLEVVEHVRQIYGSERVSHVITYSTIKAKQAINDACRV 522

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIA----------DDSRFREARLADPSVDRLLEI 514
            L  P     RL K+IP DP   +                  + F EA   DP   R+++ 
Sbjct: 523  LGYPVYMGQRLSKMIPGDPNAHLKFVLHKAQEGQKGADQYSADFEEAYENDPDARRIIDA 582

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            +  +EGL+R    HA  ++I   P++  VP   D +  + +TQ+    +   GL+K DFL
Sbjct: 583  ALSIEGLHRGEGVHACAVLIAPTPVNDHVPTKVDTKGGVEITQYEGHSVADMGLLKMDFL 642

Query: 575  GLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+TLT++ +++  +     + +D+  IPF D E Y LL    T G+FQ+ES+GM   ++
Sbjct: 643  GLRTLTVISRAIKNVKDSYGIDIDVDSIPFTDPEIYRLLREGRTAGVFQVESAGMTATIK 702

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            GM+P   + I+AL++LYRPGP++  +V  Y NR NG+E++    P +  +L+ET G ++Y
Sbjct: 703  GMRPTEYKHIVALIALYRPGPLNAGMVTSYINRMNGREEVKDYDPRLHDILEETYGTMVY 762

Query: 692  QEQVMQIAQLLSGYSLSEADV------------LRRAMGKKIKEEMDKQKERFISGASKN 739
            QEQVMQI+  +SG++  E+D             ++  +        +  +  + +GA +N
Sbjct: 763  QEQVMQISMKMSGFTAGESDKVRKAVAKKKIKLMQEVVQHWDDGTDETMEAHWKNGAVRN 822

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G  +++A +I++ + +FA Y FNKSH+A YA++  QTAW+K HYP EF+AA +T  M   
Sbjct: 823  GFDRSVAESIWDDVLEFASYAFNKSHSAGYAILVMQTAWIKAHYPHEFMAAVLTSYMGKT 882

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASA 858
            +KI  +    R   I+I+PP +N    DF      I +  A I+GVG      IM E   
Sbjct: 883  DKIVHYVSACRHEGIKILPPDINESGKDFTATKEGIRFGFAGIRGVGAGVGEAIMLERQK 942

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN-----IQKYAQ 913
              PF ++ DF  R+D+ +  R V+E+L+ AGA D  GY+RMQ++  +D      I   A 
Sbjct: 943  GGPFANIHDFVDRMDASQAKRNVVEALIKAGAFDSTGYTRMQMMSFVDKNNPQNIIDAAT 1002

Query: 914  WVEKNRTNKHENIFAH----EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
              +K++     ++F      E   FSD +        +   +   E  VLG Y S HPL 
Sbjct: 1003 KRQKDKAVGQFSMFDMFAEVEGSGFSDIVPEPDGVEWDRRFKLTKEYEVLGIYVSDHPLR 1062

Query: 970  VYKPILRKMGIKGYEESVA----------------TIRGNNIRLAAMVVSKQQKKTRKGS 1013
             Y+  L K       E                      G  IR A MV +  ++ T+ G 
Sbjct: 1063 PYEYALAKSRDYALAEIEENVEVQLPNGAMSQQFKVPEGKPIRFAGMVTNVMKRTTKNGD 1122

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
             +  VT  +         FP
Sbjct: 1123 PMAIVTLEDMEGSVTIVMFP 1142



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 30/57 (52%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
          +FVHL  HS +S+L+GA  + +++ K      PA+A+TD   LF   +F        
Sbjct: 2  AFVHLHNHSDFSILDGASRVPDMVSKAVEFGMPALALTDHGYLFGIPDFDLACRKYN 58


>gi|196229518|ref|ZP_03128383.1| DNA polymerase III, alpha subunit [Chthoniobacter flavus Ellin428]
 gi|196226750|gb|EDY21255.1| DNA polymerase III, alpha subunit [Chthoniobacter flavus Ellin428]
          Length = 1219

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 295/1119 (26%), Positives = 471/1119 (42%), Gaps = 113/1119 (10%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             + SFVHL  H+ YS L+GA+ +   + K      PA+AITD  NLF A+EF Q   ++G
Sbjct: 2    SADSFVHLHCHTEYSTLDGAVRIKEAMKKAKEYGMPALAITDHGNLFGAIEFYQAGKSSG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            + PIIGC++ +    +LK T   +    +   + LL    +GY+ L++LVS  +L D   
Sbjct: 62   VNPIIGCEVYVAPDSHLKKTATTQR--ESAFHLTLLAQNDQGYRNLVKLVSIAHL-DGMY 118

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
               RI    L + G +GLI L+G   G I++A   ++   A++    ++ + G +  ++ 
Sbjct: 119  YKPRIDKELLAQYG-KGLIGLSGCLKGEINQAIIEDNLPKAKELTGAYRDILGPENFFIE 177

Query: 186  LQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L  H    + +    +  LA    L LVA N+  FL   D+ AHD L+ +   + ++ + 
Sbjct: 178  LHNHGIEAQLKCNKTLPVLAKEFGLGLVAANDVHFLQRTDHAAHDALICIGTGSNIADER 237

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R     + Y K+ +EM ++F+++PEA +NT+ IA RC+  +                   
Sbjct: 238  RMHYVQEVYFKSPAEMRALFAEVPEACDNTLAIAERCNITIDTSPKYPNYTPPP-----G 292

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            + +   LR   +AG+  R    A      ++  ++R + E++V+ +  F+ YFLIV DFI
Sbjct: 293  RTQNEYLREITLAGMHRRYGSDA-----DSEIVQKRFELEISVLEKQGFTNYFLIVWDFI 347

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WAK++ IPVGPGRGS AGS+ AYA+ ITDIDP++F LLFERFLNP+R+S PD D+DFC 
Sbjct: 348  NWAKEHGIPVGPGRGSAAGSMIAYAMGITDIDPIKFKLLFERFLNPERVSPPDIDVDFCV 407

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR EVI YV+ KYG   V+QIITFG+L AK+ LRDV R     Y   DR+ K+IPN+  
Sbjct: 408  NRRGEVIDYVRQKYGERAVSQIITFGTLGAKSVLRDVARVQGWSYGDADRVAKMIPNELG 467

Query: 485  HPVSLQA---------------IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
              +                   I  +   ++A   +P+  +L +++ KLEGL R    HA
Sbjct: 468  ITLKGLDKKNKETGQMDHIAGAIDKNPELKKAVDTEPATAQLWDVATKLEGLTRGVGVHA 527

Query: 530  AGIVIGDR-----------------------PLSQLVPMYRDVRSDLPVT---------- 556
            AG+VIGDR                       PL+ +  +  D      +T          
Sbjct: 528  AGVVIGDRDLSDYIPLTRANDNSIVSQYAMGPLTDVGMLKCDFLGLKTLTVITDAVVLIR 587

Query: 557  ----QFNMKWIEKAGLIKFDFL----GLKTLTLLQKSLDFLAQRGVKVDLSLIP----FD 604
                 F++  I       FD L     +    L    +  + ++    D+  I       
Sbjct: 588  HREPDFDVDKIPLENQPTFDLLNRGETIGIFQLESGGMVSVCRQFDIKDIEDINAILALY 647

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--------- 655
                  L+         + +     + L  M  +    ++    + +   I         
Sbjct: 648  RPGPMDLIPDYIKRKKGKAKVKAPHKLLLDMTKETYGVLVYQEQVMQAAQILAGYTLGGA 707

Query: 656  ------DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
                              + K       +  + ++T   I   + + + A      S S 
Sbjct: 708  DLLRRAMGKKDKEKMAKERIKFCEGCKNLHNIEEKTANEIF--DTLEKFAGYGFNRSHSA 765

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN------- 762
            A          +K     +     +  S    +            +              
Sbjct: 766  AYAWISYQTAYLKANYPVEF--MAAVMSNEVSNTDKISIFVGECERMGMTILPPDVNKSG 823

Query: 763  ---KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
                        I+   A  +                +++E+     +D           
Sbjct: 824  LKFTPEEVNVEGIAAAQAARRKLQVAAQATEQGEDAPESIEEENVRFEDLPSGPGTNGSA 883

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH-IMEASADKPFDSLEDFCSRVDSKKLN 878
               TP  D K+    I Y LAAIK VG       I+E +    F SLEDFC RVD KK+N
Sbjct: 884  GAETPASDEKIHVGSIRYGLAAIKNVGEAAVAAAIVERNNKGAFQSLEDFCGRVDVKKMN 943

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK----GTF 934
            ++ LE LV  GA D  G  R QL   +D     A    ++R     ++F   +     T 
Sbjct: 944  KKALECLVKCGAFDWTGVERAQLHSEIDGALAAASSANRDRAVGQFSMFDDFEISGKATK 1003

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
            + K +  K +  +S+ +   E+ +LGFY +GHPLD Y+  L K       +       + 
Sbjct: 1004 TTKGSAPKVAPWSSTEKLAYEKELLGFYVTGHPLDEYRSALEKF--VPIAKLSEEEDKST 1061

Query: 995  IRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
            + +   + S ++K T+K       V   +     E   +
Sbjct: 1062 VTIGGALASVEKKFTKKDNKPFAVVVLEDVTASLEVMIW 1100


>gi|157826231|ref|YP_001493951.1| DNA polymerase III subunit alpha [Rickettsia akari str. Hartford]
 gi|157800189|gb|ABV75443.1| DNA polymerase III subunit alpha [Rickettsia akari str. Hartford]
          Length = 1185

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 403/1085 (37%), Positives = 598/1085 (55%), Gaps = 83/1085 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL+L  I++  ++++ PAI + D  NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTLEKIVELASSNKMPAICLADRGNLFGSLEFALYAVKKGLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I                     I+L+     GY+ L++L S  +  +  K  
Sbjct: 63   PIHGVILNIKYD------------VDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L +   EGLI L   + G + +       + A     T +++ GDR Y  + R
Sbjct: 111  DHITFEDLIKY-QEGLIALCCYTDGIVGKCLLAREQEQAMLFARTLQEILGDRFYFEIMR 169

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +    E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  
Sbjct: 170  HDLPEEQFIEDSYIKIASELSIPLVATNKVLFSEKSMHDAHDVLLCISAGVTKEYPDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y ++  EM  IFSDLP A++NTV +  RC F     A      +          E
Sbjct: 230  VSENCYFRSPHEMREIFSDLPNAIQNTVNLRERCYF-----AAHANPPMLPNFATKDISE 284

Query: 308  ENELRNKAVAG-------LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             + +R  A  G                  +     +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TDLIRKDAKEGLLARLATKFKSEHISLENQEELKTEYFARLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKKKGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV++KYGH RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405  DFCQERREEVINYVRSKYGHNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464

Query: 481  NDPAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PV+  QA+ +      A   +           +  +L+ S  LEGL+RH STHAA
Sbjct: 465  FSAVNPVTLEQAMREVPELANAAKGNGLYNLEGEAELIKLVLDTSLILEGLHRHVSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  SD+ V  ++MK+ E AGLIKFDFLGL+TLT++      L 
Sbjct: 525  GIVIACTDLVDIVPVYKDANSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            ++G++VD + + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLKQPDYLHELLKPILEETYGVVIYQEQVQRIAQILAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIK+EM++ +E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAAAY 
Sbjct: 705  DLLRRAMGKKIKKEMEEHEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAAAYG 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            VISYQTA++K +Y  EFL A + LE++N +KI  F Q+A+   I+I+ P++N+    F  
Sbjct: 765  VISYQTAYLKANYSAEFLVACLNLELNNHDKINLFLQEAKDSGIKIIAPNINSSEGYFTT 824

Query: 831  ----------------------------------------GDNRIYYSLAAIKGVGTTTA 850
                                                     +  I ++L AIKGV  +  
Sbjct: 825  CHFGSALCHPRVGVDPEKTSEMKMDSRFCENNIESTGYDKEERAIIFALGAIKGVTPSFG 884

Query: 851  RHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + + +       F S+ DF  R+  K +N ++LE+L+ +G  D    +R+QL  S+  + 
Sbjct: 885  KLVTDERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLFLSISKLL 944

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             Y+    + + +   ++    K +      L      + +     E   +G + S HPL 
Sbjct: 945  AYSTSYHEEQESNQFSL---IKVSSLSPTILVSSDYADKNTLAFYEFESMGLFISNHPLT 1001

Query: 970  VYKPILRKMGIKGYEES-VATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             Y+ I  ++ I            G   + LA ++  K  + + +G R   +  S+P   +
Sbjct: 1002 EYQEIFSRLNILNTAYLYNNLPEGTNRVNLAGVIQKKDSRMSARG-RFVTLVLSDPENIF 1060

Query: 1028 EANFF 1032
            E + F
Sbjct: 1061 ELSVF 1065


>gi|296390977|ref|ZP_06880452.1| error-prone DNA polymerase [Pseudomonas aeruginosa PAb1]
          Length = 1024

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 280/1034 (27%), Positives = 455/1034 (44%), Gaps = 78/1034 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
             ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q A    +Q
Sbjct: 2    SAYAELHCLSNFSFQRGASSAAELFARAARLGYRALAITDECSLAGIVRAWQAAREHQVQ 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G ++ ++                  P +VLL    EGYQ L  L++R       K  
Sbjct: 62   LIVGSEIRLE----------------QGPKLVLLAEDLEGYQNLCRLITRGR-RQADKGH 104

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    LQ+     L +      G               +++   ++ F  RL++ ++ 
Sbjct: 105  YRLLREDLQQPLAGLLAIWLPNDHGD--------------EQVAWLRERFPQRLWLGVEL 150

Query: 189  HRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HRG  D  R  +++ LA    LP VA  +    +       D + A+ +   VS+     
Sbjct: 151  HRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLPVSEAGAYL 210

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              P+     R+            L  T++IA RC F L+      PR +     D     
Sbjct: 211  F-PNGERHLRTLEALQGIYPQALLAETLKIAERCRFDLEQLKYQYPRELVPAGHD----P 265

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR+    G+  R   GA A        R++++ EL +IA + +  YFL V D + +A
Sbjct: 266  ASWLRHLTEQGIARRWPNGASA------KVRKQIERELELIAELGYESYFLTVQDIVAFA 319

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I    GRGS A S   +AL IT++DP R +LLFERFL+ +R   PD D+DF  +RR
Sbjct: 320  RSREIL-CQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPDIDVDFEHERR 378

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+YV  +YG +R A      +     A+RDV +AL +P  QVD L            
Sbjct: 379  EEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLANCCGRWSDQAP 438

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            S + + +           P + R+L ++ +L G  RH S H  G VI ++PL  LVP+  
Sbjct: 439  SAERLEE----AGFDPQSPILRRVLALTGELIGFPRHLSQHPGGFVISEQPLDTLVPVEN 494

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD--D 605
               ++  V Q++   ++  GL+K D L L  L+ L++S D +        LS+      D
Sbjct: 495  ASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRGGKRLSIASIPSED 554

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
              TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    
Sbjct: 555  PATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPIQGDMVHPYLR 614

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R+NG+E +      ++ + + T GV ++QEQVM++A + + Y+  EAD LRR+M    + 
Sbjct: 615  RRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEADELRRSMAAWKRH 674

Query: 724  EM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
               +  +ER   G   NG     A  IFE +  F  YGF +SHAA++A+++Y ++W+K H
Sbjct: 675  GGLEHHRERLTRGMLANGYEADFAARIFEQIKGFGSYGFPESHAASFALLTYASSWLKRH 734

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYY 837
             P  F  A +           +  QDAR+  +Q  P  V     D  +         I  
Sbjct: 735  EPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCSLESFGQAQPAIRL 794

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  I+G     AR I +    +PF  + D   R    +L+ R LE L  AGAL      
Sbjct: 795  GLRMIRGFREEDARRIEQVREAQPFLDVHDLGRRA---RLDARALELLADAGALRGLAGH 851

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R +   ++ ++                 +FA         ++L    + +      ++  
Sbjct: 852  RHKARWAVASV------------EPQLPLFAEGTVIEESTVSLP---LPSRGEELLSDYA 896

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            +LG     HPL + +  L+    +   E      G  IR+A +VV +Q+ +T  G  I +
Sbjct: 897  LLGTTLGPHPLKLLRGQLKARRCRDSRELAKLGHGRPIRVAGLVVGRQRPQTASG--ITF 954

Query: 1018 VTFSEPAKEYEANF 1031
            +T  +         
Sbjct: 955  ITLEDEFGMVNVVV 968


>gi|313105494|ref|ZP_07791765.1| hypothetical protein PA39016_000030000 [Pseudomonas aeruginosa 39016]
 gi|310878267|gb|EFQ36861.1| hypothetical protein PA39016_000030000 [Pseudomonas aeruginosa 39016]
          Length = 1024

 Score =  625 bits (1612), Expect = e-176,   Method: Composition-based stats.
 Identities = 279/1034 (26%), Positives = 456/1034 (44%), Gaps = 78/1034 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
             ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q A    +Q
Sbjct: 2    SAYAELHCLSNFSFQRGASSAAELFARAARLGYRALAITDECSLAGIVRAWQAAREHQVQ 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G ++ ++                  P +VLL    EGYQ L  L++R       K  
Sbjct: 62   LIVGSEIRLE----------------QGPKLVLLAEDLEGYQNLCRLITRGR-RQADKGH 104

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    LQ+             +G +      +      ++    ++ F  RL++ ++ 
Sbjct: 105  YRLLREDLQQ-----------PLAGLLAIWLPNDHED---EQAAWLRERFPQRLWLGVEL 150

Query: 189  HRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HRG  D  R  +++ LA    LP VA  +    +       D + A+ +   VS+     
Sbjct: 151  HRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLPVSEAGAYL 210

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              P+     R+    +       L  T++IA RC F L+      PR +     D     
Sbjct: 211  F-PNGERHLRTLEALLGIYPQALLAETLKIAERCRFDLEQLKYQYPRELVPAGHD----P 265

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR+    G+  R   GA A        R++++ EL +IA + +  YFL V D + +A
Sbjct: 266  ASWLRHLTEQGIARRWPNGASA------KVRKQIERELELIAELGYESYFLTVQDIVAFA 319

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I    GRGS A S   +AL IT++DP R +LLFERFL+ +R   PD D+DF  +RR
Sbjct: 320  RGREIL-CQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPDIDVDFEHERR 378

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+YV  +YG +R A      +     A+RDV +AL +P  QVD L            
Sbjct: 379  EEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLANCCGRWSDQAP 438

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            S + + +           P + R+L ++ +L G  RH S H  G VI ++PL  LVP+  
Sbjct: 439  SAERLEE----AGFDPQSPILRRVLALTGELIGFPRHLSQHPGGFVISEQPLDTLVPVEN 494

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD--D 605
               ++  V Q++   ++  GL+K D L L  L+ L++S D +        LS+      D
Sbjct: 495  ASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRGGKRLSIASIPSED 554

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
              TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    
Sbjct: 555  PATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPIQGDMVHPYLR 614

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R+NG+E +      ++ + + T GV ++QEQVM++A + + Y+  EAD LRR+M    + 
Sbjct: 615  RRNGEEPVAYPSAELEEVFERTLGVPLFQEQVMELAIVAADYTPGEADELRRSMAAWKRH 674

Query: 724  EM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
               +  +ER   G   NG     A  IFE +  F  YGF +SHAA++A+++Y ++W+K H
Sbjct: 675  GGLEHHRERLTRGMLANGYEADFAARIFEQIKGFGSYGFPESHAASFALLTYASSWLKRH 734

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYY 837
             P  F  A +           +  QDAR+  +Q  P  V     D  +         I  
Sbjct: 735  EPAAFACALINSWPMGFYSPDQLLQDARRHALQTRPVDVRHSGWDCSLEPFGQAQPAIRL 794

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  I+G     AR I +    +PF  + D   R    +L+ R LE L  AGAL      
Sbjct: 795  GLRMIRGFREEDARRIEQVREAQPFLDVHDLGRRA---RLDARALELLADAGALRGLAGH 851

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R +   ++ ++                 +FA         ++L    + +      ++  
Sbjct: 852  RHKARWAVASV------------EPQLPLFAEGTVIEESTVSLP---LPSRGEELLSDYA 896

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            +LG     HPL + +  L+    +   E      G  IR+A +VV +Q+ +T  G  I +
Sbjct: 897  LLGTTLGPHPLKLLRGKLKARRCRDSRELAKLGHGRPIRVAGLVVGRQRPQTASG--ITF 954

Query: 1018 VTFSEPAKEYEANF 1031
            +T  +         
Sbjct: 955  ITLEDEFGMVNVVV 968


>gi|209515641|ref|ZP_03264505.1| DNA polymerase III, alpha subunit [Burkholderia sp. H160]
 gi|209503877|gb|EEA03869.1| DNA polymerase III, alpha subunit [Burkholderia sp. H160]
          Length = 1049

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 266/1038 (25%), Positives = 450/1038 (43%), Gaps = 64/1038 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S+++ L GA     +  + A     A+AITD  +L   +     A  A + 
Sbjct: 9    PAYAELFCFSNFTFLRGASHAEELAGRAAQLGYSALAITDECSLAGVVRAHVAAKEAKLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G    +   D                 ++LL     GY  L EL++   +    K  
Sbjct: 69   FIVGSYFRLVNADG-----------SPAFGLILLARNRNGYGNLSELITLARMR-APKGE 116

Query: 129  VRICLSWLQ--EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L   E     L+ +    +  +    F  S    + ++      F  R +V L
Sbjct: 117  YRLTPQDLSRPEKAYRHLLGMPDCLAILVPD--FPASEDALDAQVEWLDATFTGRAWVGL 174

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              H R  D      V  +A + ++P+VA    +          D + A+     V  +  
Sbjct: 175  VLHQRAMDDMHRGAVEFVARSRDVPVVALGEVVMHVRSRKPLQDTMTAIRVGKPV-HECG 233

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     RS +        +AL  T++I  RC+F L       P  +         
Sbjct: 234  YDLAPNAEQHLRSRLRLANLYPQDALAATLDITSRCTFSLDELRYEYPDELVPAG----H 289

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR +   G + R   G           +Q+++ EL +IA +++  YFL V D ++
Sbjct: 290  TPASYLRQETYIGAQRRFPSG------IPHHVQQQIEHELELIADLQYEPYFLTVYDIVR 343

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I    GRGS A S   Y L +T++DP R ++LFERF++ +R   PD D+DF   
Sbjct: 344  FARSQHIL-CQGRGSAANSAVCYCLGVTEVDPARGNMLFERFISKERGEPPDIDVDFEHQ 402

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG +R A      + + + ALR+ G+AL +    VD + K        
Sbjct: 403  RREEVIQYIYRKYGRDRAAIAAAVSTYRPRGALRETGKALGVDPLIVDAVAKSHHWFDGR 462

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               L   A+           P +    +++ +L    RH S H+ G VI    L++LVP+
Sbjct: 463  QDLLARFAES----GLDPDKPLIQAWAKLASQLLNFPRHLSQHSGGFVISRGKLTRLVPV 518

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFD 604
                  D  V +++   +E  GL+K D L L  L+ ++++LD    QRG + ++  IP +
Sbjct: 519  ENAAMVDRSVIEWDKDDLESLGLLKVDVLALGMLSAIRRTLDLVSEQRGERFEMQDIPAE 578

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY +++   T+G+FQ+ES      L  M+P    D++  V++ RPGPI    V+   
Sbjct: 579  DEATYAMISAADTVGVFQIESRAQMSMLPRMRPTEFYDLVIEVAIVRPGPIQGGAVHPYL 638

Query: 665  KNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721
            +  +  E +      +   L  T GV I+QEQVMQ+A L +G++  EAD LRRAM     
Sbjct: 639  QRRQGFEPVTYPSDALKTALGRTLGVPIFQEQVMQVAILAAGFTAGEADQLRRAMAAWKR 698

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K  ++K  +R + G  + G ++  A  IFE +  F +YGF +SHAA++A++ Y ++W+K 
Sbjct: 699  KGGLEKYYDRIVLGMQERGYTQAFAEAIFEQIKGFGEYGFPESHAASFALLVYASSWLKC 758

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------RI 835
            H P  FLAA +  +        +  QDA++  ++++P  V     D  +  N       +
Sbjct: 759  HEPEAFLAAMLNSQPMGFYSPSQLVQDAKRHGVKVLPVDVTVSGWDSSLEPNAGTPRPAV 818

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L+ ++G+    A  I  A A +PF S+ D   R    +L+R+ L +L  A AL    
Sbjct: 819  RLGLSLLRGMKDGAAERIENARAVRPFASVNDLARRA---QLDRKDLHALAQANALTSLA 875

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R + L    ++               +                 +    + +     +
Sbjct: 876  GNRREALWQ--SVVAVPDKDMLAAAAAQD--------------ETPELGAPSEADDIVAD 919

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
             R LG   + HPL++ +P L    +           G   R   +V  +Q+  T KG  +
Sbjct: 920  YRSLGLTLNRHPLELLRPQLLANRLMPASTLRTYRDGRLARACGLVTVRQRPGTAKG--V 977

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +VT  +         +P
Sbjct: 978  VFVTLEDETGNVNVIIWP 995


>gi|240173286|ref|ZP_04751944.1| error-prone DNA polymerase [Mycobacterium kansasii ATCC 12478]
          Length = 1100

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 291/1038 (28%), Positives = 482/1038 (46%), Gaps = 58/1038 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S ++  L  H++YS L+GA +   ++++ A     A+A+TD N L+ A+ F++ A    
Sbjct: 59   SSAAYAELHAHTAYSFLDGASTPEELVEEAARLDLCALALTDHNGLYGAVRFAEAAAELD 118

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ + G +L +          + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 119  MRTVFGAELSL------GSEARTEQPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 172

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVN 185
               R     L E       +LTG   G + +A        A++ L      FG  R+ + 
Sbjct: 173  GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSEGGPDAAQRALADLVDRFGAYRVSIE 232

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L  H    D  R + +  LA    + +VAT  + F           + A+     +    
Sbjct: 233  LTHHGHPLDDERNATLAGLAPRFGVGVVATTGAHFAHPSRSRLAMAMGAIRARQSLDSAA 292

Query: 245  RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     +L++  EM  +F+  PEA+    E+  +C+F L + AP LP F        
Sbjct: 293  GWLAPLGGSHLRSGDEMARMFAWRPEAVTAAAELGGQCAFELALIAPQLPPFDVPGG--- 349

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E++ LR   +AG   R      A   +AQ     +  EL VIA++KF GYFL+V D 
Sbjct: 350  -HTEDSWLRQLVMAGARHRYGPPDGAPRAYAQ-----IGHELKVIAQLKFPGYFLVVHDI 403

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
             Q+ ++NNI    GRGS A S   YAL IT +DP+   LLFERFL+P R   PD DID  
Sbjct: 404  TQFCRRNNIL-CQGRGSAANSAVCYALGITAVDPVANELLFERFLSPARDGPPDIDIDIE 462

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRR++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K I +  
Sbjct: 463  SDRREKVIQYVYDKYGRDYAAQVANVITYRGRSAVRDMARALGFSQGQQDAWSKQISHWN 522

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                 +  I +               ++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 523  GQAAEVDGIPE---------------QVVDLATQIRNLPRHMGIHSGGMVICDRPIADVC 567

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIP 602
            P+      +  V Q++       GL+KFD LGL  L+ L  ++D +A+    +VDL+ + 
Sbjct: 568  PVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAMDLVAEHKGLEVDLAKLD 627

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660
              +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  
Sbjct: 628  LSEPAVYEMLARADSVGVFQVESRAQMATLPRLRPRVFYDLVVEVALIRPGPIQGGSVHP 687

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R+NG + +V  HP + P L++T GV ++QEQ+MQ+A   +G++ +EAD LRRAM  K
Sbjct: 688  YIRRRNGIDPVVYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFTAAEADQLRRAMGSK 747

Query: 720  KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            +  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A + + +AW
Sbjct: 748  RSTERMQRLRGRFYDGMRALHGTRDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 807

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836
             K H+P  F AA +  +       +    DAR+  + +  P VN       +      + 
Sbjct: 808  FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVVVHGPDVNASLAHATLENAGMEVR 867

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L A++ +G   A  ++    A+ PF SL D  SRV   +L+    E+L  AGAL CFG
Sbjct: 868  LGLGAVRHIGDDLAEKLVGERNANGPFASLLDLASRV---QLSVPQTEALATAGALGCFG 924

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             SR +           A W       +  +         +D   +      +       +
Sbjct: 925  MSRRE-----------ALWAAGAAATQRPDRLPGVGAQGADGSHIPVLPGMSELELAAAD 973

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     +P    +  L  MG+   +   +   G+ + +A  V  +Q+  T +G  +
Sbjct: 974  VWATGISPDSYPTQFLRADLDAMGVLPADALGSVPDGDRVLIAGAVTHRQRPGTAQG--V 1031

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             ++   +          P
Sbjct: 1032 TFINLEDETGMVNVLCTP 1049


>gi|330998194|ref|ZP_08322020.1| DNA polymerase III, alpha subunit [Paraprevotella xylaniphila YIT
            11841]
 gi|329568886|gb|EGG50684.1| DNA polymerase III, alpha subunit [Paraprevotella xylaniphila YIT
            11841]
          Length = 1316

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 329/1059 (31%), Positives = 522/1059 (49%), Gaps = 98/1059 (9%)

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A     +PI GC++ +  +   ++    K        +++L     GY  L++LVS+ +
Sbjct: 142  AARKRLFKPIFGCEMYVAPR---RLDQMEKEKDGRRYHLIVLAKNETGYHNLVKLVSKSW 198

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
              D      R     L E   EGLI+ +   +G + R       + AE+ +  +K++FGD
Sbjct: 199  T-DGFYVRPRTDRFEL-EAHREGLIICSACIAGEVPRKILSGDLEGAEEAVQWYKRVFGD 256

Query: 181  RLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              Y+ LQRH   D             +   +++++LA  +++ LV TN+  F+ +ED EA
Sbjct: 257  NYYLELQRHEVKDPDQRANRETFPLQQRANARLIELARKYDVKLVCTNDCHFVEQEDAEA 316

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            HD L+ ++ +  +    R   +   + K R+EM  +F+D+PEAL NT +I  +  F    
Sbjct: 317  HDRLICLSTNRDLDDPKRMLYSKQEWFKTRAEMNEVFADVPEALANTCDICDQVEFYSID 376

Query: 288  HAPILPRFIEKECDDIQKE----------------------------------------- 306
            HAPI+P F   E    ++                                          
Sbjct: 377  HAPIMPNFAIPEEFGTEEGYRKKYTDEDLFEEFTRDENGNVVLSREDAEQKVKKLGGCDK 436

Query: 307  ------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                  E + L      G                +  R+R++FEL+V+  M F GYFLIV
Sbjct: 437  LYRLKLEADYLAELTYIGAAKLYGDPL------PEHVRERINFELHVMKTMGFPGYFLIV 490

Query: 361  ADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
             D+I  A+   N+ VGPGRGS AGS  AY L IT IDP+ + LLFERFLNPDR+S+PD D
Sbjct: 491  QDYINAARHELNVSVGPGRGSAAGSAVAYCLGITKIDPIEYDLLFERFLNPDRISLPDID 550

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  D R +V+ +V  KYG E+VA IIT+G++  K A++DV R  ++P    + LCKLI
Sbjct: 551  VDFDDDGRGKVLSWVTQKYGEEKVAHIITYGTMATKLAIKDVARVEKLPLDISNGLCKLI 610

Query: 480  P--------NDPAHPVSLQAIADDSRFREARL-ADPSVDRLLEISQKLEGLYRHASTHAA 530
            P                  AI+     ++A    +P +   +  ++ LEG  R+   HA 
Sbjct: 611  PDKLPDDENGKSRKMNLPNAISCIPELQQAEASPNPLLRDTIRYARMLEGNVRNTGVHAC 670

Query: 531  GIVIGDRPLSQLVPMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            G++I    +S  VP+      +       TQ+    IE  GLIK DFLGLKTL+++++  
Sbjct: 671  GVIICRDDVSDWVPVSTAEDKETGEKLRCTQYEGSVIEDTGLIKMDFLGLKTLSIIKECQ 730

Query: 587  DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
              +    G+++D+  +   D  TY L     T+G FQ ES GM++ L  +QP   ED+IA
Sbjct: 731  ANIYDSLGMEIDVDALDITDPATYRLYCDGRTIGTFQFESPGMQKYLRELQPSTFEDLIA 790

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            + +LYRPGP+D I  + +RK G++ +    P ++  LK+T G+ +YQEQVM +++ L+ +
Sbjct: 791  MNALYRPGPMDYIPDFIDRKQGRKPVEYDIPCMEKYLKDTYGITVYQEQVMLLSRQLADF 850

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +  E+D LR+AMGKK+ E+++    +FI G  KNG    +   I+    KFA Y FNKSH
Sbjct: 851  TRGESDTLRKAMGKKLIEKLNHMYPKFIEGGKKNGHDPKVLEKIWADWKKFASYAFNKSH 910

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A  Y+ ++YQTA++K ++P +++AA M+  + N+  I K   + +   I  + P VN   
Sbjct: 911  ATCYSWVAYQTAYLKANFPAQYMAAVMSRSLANITDITKLMSECKSIGINTLGPDVNISR 970

Query: 826  VDFKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883
              F V  D  I + L A+KG+G +    I++   A  P+ ++ DF  RV S  + R  LE
Sbjct: 971  RKFSVDVDGNIRFGLGAVKGLGDSAVDAIVKEREAHGPYKNIFDFIQRVPSGAVKRNNLE 1030

Query: 884  SLVFAGALDCF-GYSRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            SLV +GA DCF G +R Q           +D + +Y    + ++     ++F        
Sbjct: 1031 SLVLSGAFDCFEGITREQYFGVNAKGESFIDQLARYGSRYQTDKDAVQNSLFGDMDMVEI 1090

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GN 993
                + +    +S  R   E+ ++G Y S HPLD Y  IL+ +      +     +    
Sbjct: 1091 ATPEVPQAEPWSSLERLNKERDLVGIYLSAHPLDDYAVILQNVCNVHMADLKDLEQFVNM 1150

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++ L  MV + ++  ++ G   G VT  +    YE   F
Sbjct: 1151 DLTLGGMVTAVRKGISKTGKPYGIVTMEDFTGAYELALF 1189



 Score = 91.4 bits (225), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           FVHL VH+ YS+L+G  S++ ++DK   D    +AITD  N+ +  EF        
Sbjct: 3  DFVHLHVHTQYSILDGQASVSRLVDKAMKDGMRGMAITDHGNMMAIKEFFNYTTKKN 59


>gi|107100135|ref|ZP_01364053.1| hypothetical protein PaerPA_01001156 [Pseudomonas aeruginosa PACS2]
          Length = 1024

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 279/1034 (26%), Positives = 453/1034 (43%), Gaps = 78/1034 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
             ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q A    +Q
Sbjct: 2    SAYAELHCLSNFSFQRGASSATELFARAARLGYRALAITDECSLAGIVRAWQAAREHQVQ 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G ++ ++                  P +VLL    EGYQ L  L++R       K  
Sbjct: 62   LIVGSEIRLE----------------QGPKLVLLAEDLEGYQNLCRLITRGR-RQADKGH 104

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    LQ+     L +      G               ++    ++ F  RL++ ++ 
Sbjct: 105  YRLLREDLQQPLAGLLAIWLPNDHGD--------------EQAAWLRERFPQRLWLGVEL 150

Query: 189  HRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HRG  D  R  +++ LA    LP VA  +    +       D + A+ +   VS+     
Sbjct: 151  HRGADDDARLDKLLALASHLRLPPVACGDVHMHARGRRALQDCMTAIRNHLPVSEAGAYL 210

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              P+     R+            L  T++IA RC F L+      PR +     D     
Sbjct: 211  F-PNGERHLRTLEALQGIYPQALLAETLKIAERCRFDLEQLKYQYPRELVPAGHD----P 265

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR+    G+  R   GA A        R++++ EL +IA + +  YFL V D + +A
Sbjct: 266  ASWLRHLTEQGIARRWPNGASA------KVRKQIERELELIAELGYESYFLTVQDIVAFA 319

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I    GRGS A S   +AL IT++DP R +LLFERFL+ +R   PD D+DF  +RR
Sbjct: 320  RGRKIL-CQGRGSAANSAVCFALGITELDPDRTNLLFERFLSRERNEPPDIDVDFEHERR 378

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+YV  +YG +R A      +     A+RDV +AL +P  QVD L            
Sbjct: 379  EEVIQYVFTRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPEQVDVLANCCGRWSDQAP 438

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            S + + +           P + R+L ++ +L G  RH S H  G VI ++PL  LVP+  
Sbjct: 439  SAERLEE----AGFDPQSPILRRVLALTDELIGFPRHLSQHPGGFVISEQPLDTLVPVEN 494

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD--D 605
               ++  V Q++   ++  GL+K D L L  L+ L++S D +        LS+      D
Sbjct: 495  ASMAERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLIHALRGGKRLSIASIPSED 554

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
              TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    
Sbjct: 555  PATYEMISRADTIGVFQIESRAQMAMLPRLRPQKFYDLVIQVAIVRPGPIQGDMVHPYLR 614

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R+NG+E +      ++ + + T GV ++QEQVM++A + + Y+  EAD LRR+M    + 
Sbjct: 615  RRNGEEPVAYPSAELEKVFERTLGVPLFQEQVMELAIVAADYTPGEADELRRSMAAWKRH 674

Query: 724  EM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
               +  +ER   G    G     A  IFE +  F  YGF +SHAA++A+++Y ++W+K H
Sbjct: 675  GGLEHHRERLTRGMLAKGYEADFAARIFEQIKGFGSYGFPESHAASFALLTYASSWLKRH 734

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYY 837
             P  F  A +           +  QDAR+  +Q  P  V     D  +         I  
Sbjct: 735  EPAAFACALINSWPMGFYSPDQLLQDARRHTLQTRPVDVRHSGWDCSLESFGQAQPAIRL 794

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  I+G     AR I +    +PF  + D   R    +L+ R LE L  AGAL      
Sbjct: 795  GLRMIRGFREEDARRIEQVREAQPFLDVHDLGRRA---RLDARALELLADAGALRGLAGH 851

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R +   ++ ++                 +FA         ++L    + +      ++  
Sbjct: 852  RHKARWAVASV------------EPQLPLFAEGTVIEETTVSLP---LPSRGEELLSDYA 896

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            +LG     HPL + +  L+    +   E      G  IR+A +VV +Q+ +T  G  I +
Sbjct: 897  LLGTTLGPHPLKLLRGQLKACRCRDSRELAKLGHGRPIRVAGLVVGRQRPQTASG--ITF 954

Query: 1018 VTFSEPAKEYEANF 1031
            +T  +         
Sbjct: 955  ITLEDEFGMLNVVV 968


>gi|307730066|ref|YP_003907290.1| DNA polymerase III subunit alpha [Burkholderia sp. CCGE1003]
 gi|307584601|gb|ADN57999.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1003]
          Length = 1049

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 274/1038 (26%), Positives = 450/1038 (43%), Gaps = 64/1038 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S++S L GA     +  + A     A+AITD  +L   +     A  A + 
Sbjct: 9    PAYAELFCLSNFSFLRGASHAEELAGRAAQLGYSALAITDECSLAGVVRAHVAAKEAKLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G    +   D                 ++LL     GY  L EL++        K  
Sbjct: 69   FIVGSYFRLVNADG-----------SPAFGLILLAKNRNGYGNLSELITLARTR-APKGE 116

Query: 129  VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L     +   L+ +    +  +    F    +V + +L    + F  R +V L
Sbjct: 117  YRLTPQDLSRPDRDYRHLLGVPDCLAILVPN--FPAKEEVLDAQLEWLDETFPGRAWVGL 174

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              H R  D      V  +A   ++P+VA    L          D L A+     V  +  
Sbjct: 175  VLHQRAMDDIHRGAVEFIARNRDVPVVALGEVLMHVRSRKPLQDTLTAIRVGKPV-HECG 233

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     RS +       PEAL  TV+IA RC+F L       P  +         
Sbjct: 234  YDLAPNAEQHLRSRLRLANLYSPEALAATVDIAARCTFSLDELRYEYPDELVPSGF---- 289

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 LR +   G + R   G           +++++ EL +IA +++  YFL V D ++
Sbjct: 290  TPAAYLRQETYIGAQRRFPSG------IPLQVQEQIEHELELIAELQYEPYFLTVYDLVR 343

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I    GRGS A S   Y L +T++DP R ++LFERF++ +R   PD D+DF   
Sbjct: 344  FARSQHIL-CQGRGSAANSAVCYCLGVTEVDPARGNMLFERFISKERGEPPDIDVDFEHQ 402

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG +R A      + +A+  LR+ G+AL +    VD + K        
Sbjct: 403  RREEVIQYIYRKYGRDRAAIAAAVSTYRARGVLRETGKALGVDLQIVDAVAKSHHWFDNS 462

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               L+   +           P +     ++ +L G  RH S H+ G VI    L++LVP+
Sbjct: 463  ADLLKRFEEC----GLNPQTPLIRAWATLAAQLYGFPRHLSQHSGGFVISRGKLTRLVPV 518

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFD 604
                  +  V Q++   +E  GL+K D L L  L+ ++++L+    QRG + ++  IP +
Sbjct: 519  ENAAMPERSVIQWDKDDLESLGLLKVDVLALGMLSAIRRTLELVSEQRGERFEMQDIPAE 578

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYN 662
            D  TY ++    T+G+FQ+ES      L  M+P    D++  V++ RPGPI    +  Y 
Sbjct: 579  DEATYDMICAADTVGVFQIESRAQMSMLPRMRPRVFYDLVIEVAIVRPGPIQGGAVHPYL 638

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721
             R+ G E +      ++  L  T GV I+QEQVMQ+A L +G++  EAD LRRAM     
Sbjct: 639  RRRQGFEPVTYPSAALETALGRTLGVPIFQEQVMQVAILAAGFTAGEADQLRRAMAAWKR 698

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K  + K  +R + G  + G     A  IFE +  F +YGF +SHAA++A++ Y ++W+K 
Sbjct: 699  KGGLGKYYDRIVLGMQERGYDLAFAEAIFEQIKGFGEYGFPESHAASFALLVYTSSWLKC 758

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GDNRI 835
            H P  FLAA +  +        +  QDA++  ++++P  V+    +  +          +
Sbjct: 759  HEPEAFLAAMLNSQPMGFYSSSQLVQDAQRHGVKVLPVDVSVSGWNSSLERRAGGERPAV 818

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L+ ++G+   TA  I  A A +PF S++D   R     L+RR L  L  A AL    
Sbjct: 819  RLGLSLLRGMKEGTAGRIENARAVRPFASVKDLARRA---ALDRRDLHILADANALASLA 875

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R + L             +       +++ A             +    + +     +
Sbjct: 876  GNRREALW------------QSAAAVPEKDMLAAAAVEDET----PELGAPSEAHDIVAD 919

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
             R LG     HPL++ +P L    +           G   R   +V  +Q+  T KG  +
Sbjct: 920  YRSLGLTLGRHPLELLRPQLLANRLMPASTLRTYRDGRLARGCGLVTVRQRPGTAKG--V 977

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +VT  +         +P
Sbjct: 978  IFVTIEDETGNVNVIIWP 995


>gi|149198162|ref|ZP_01875209.1| DNA polymerase III, alpha subunit [Lentisphaera araneosa HTCC2155]
 gi|149138764|gb|EDM27170.1| DNA polymerase III, alpha subunit [Lentisphaera araneosa HTCC2155]
          Length = 1223

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 336/1019 (32%), Positives = 544/1019 (53%), Gaps = 24/1019 (2%)

Query: 22   LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
            +L+ A ++  ++ ++      A A+TD  N+  ++ F+     A I+PI+GC   ++   
Sbjct: 1    MLQSACTMPALIKRLEEGGFEAAALTDFANMCGSIAFTNGLKKANIKPILGCYTYLNNS- 59

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                  Q  +   +   ++LL     GYQ L ++ ++ +L        RI  S+L++  +
Sbjct: 60   ----RTQNPSNMSSFNGLILLAKNNVGYQNLCKINAQSHLES-FHIKPRIDRSFLRQY-S 113

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH-RGYDRYRESQ 199
            EG+I +       I      N        L  +  +FG +  Y+ +Q+H R  D  +   
Sbjct: 114  EGIIAIAPFHDSDIASDLSKNIDPT--NALNFYVDIFGKENFYLEIQKHKREGDDEKYPL 171

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            V+QLA  +E+ LVA+    +   +    HD++  V   TV   +       ++YL    E
Sbjct: 172  VLQLAKDNEIGLVASQTVYYPEAKMAIPHDIVCCVGEKTVHDPQKLRFPEKNYYLHLPEE 231

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG- 318
            M  +FSD+PEALENT +IA +C                       + ++  L    V G 
Sbjct: 232  MEGLFSDVPEALENTRKIANQCDVAFDTSEHYPV-----YPMSDDRTQQQFLLEICVGGL 286

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
             E         K    ++  +R DFEL VI +  +  YFL+V DFI W+K N+IPVGPGR
Sbjct: 287  KERYGLDHKNPKDQREKEIVERTDFELGVIHKSGYDSYFLVVWDFINWSKTNDIPVGPGR 346

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GSGAGS+ AY   IT+IDP++++LLFERFLNP+R+S PDFDIDFC+ RR EVI YV+ KY
Sbjct: 347  GSGAGSIVAYLTGITNIDPIKYNLLFERFLNPERISPPDFDIDFCERRRPEVIDYVRKKY 406

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA---DD 495
            G E+VAQI T+G+++AKA ++DV RAL   +++ D++ KLIP D    +           
Sbjct: 407  GSEKVAQIGTYGTMKAKAVIKDVTRALGYEHTRADQITKLIPEDLKITLHKALFDPKIKS 466

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
                    ++  V ++++ +  LEGL R+   HA G++IGD+ L+ L+P+     +   V
Sbjct: 467  EELIALNDSEEWVKQIIDNAMPLEGLNRNMGIHACGVIIGDQELTNLIPLI-SGANGEVV 525

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTT 614
            TQF+    E  GL+K DFLGL+TLTL++ +L  + +   +++D+  IP DD  TY L   
Sbjct: 526  TQFSAGPCEDLGLLKMDFLGLRTLTLIKDTLGLIKENHDIEIDIEAIPIDDRRTYKLFQE 585

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
              T  +FQ ES+GM++ ++ +QP    D+IA+ +LYRPGPI  I  +  RK+G+E+I   
Sbjct: 586  GKTTAVFQYESAGMQKYMKELQPTVFPDLIAMNALYRPGPIAYIPSFIERKHGREEITYD 645

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
               +D  L+ET G+ +YQEQVM ++Q L  ++  EAD LR+AMGKK  + + + K +F+ 
Sbjct: 646  CEGMDEYLQETYGITVYQEQVMLLSQKLGNFTKGEADTLRKAMGKKKMDLLAQLKPKFLD 705

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
                NG  +      +E    FA Y FNKSH+  YA ++YQTA++K HYP EF+AA MT 
Sbjct: 706  QGEGNGHDRKKLEETWEKWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEFMAAVMTS 765

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
            E+ N +K+  F ++ R   ++++PP++N   V F V +  I ++L AIKGVGT+ +  I+
Sbjct: 766  ELGNADKVTFFLEECRNLGLKVLPPNINKSKVTFSVENGAIRFALGAIKGVGTSASETIV 825

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
                +  ++S  + C RV    ++R+VLE ++ +G +D FG  R  L Q +D   +++  
Sbjct: 826  RIRKEGEYESFMNLCERVGHTNVSRKVLEGIIASGGMDEFGNKRSALTQFIDRALEHSSS 885

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
               +      ++FA  +   +     +     +   + + E+ +LGFY +GHP+  +K +
Sbjct: 886  KANDLAMGQMSLFAEVEEVNTISPD-DSMPEWDLRYKLDMEKTLLGFYATGHPVGEHKQL 944

Query: 975  LRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++K                 + RL  M+ +   +KT+KG         + +   E   +
Sbjct: 945  IKKFSSNSITGLKKQSEDRAVARLGVMISNLNLRKTKKGKTFASFNAEDLSDGIECICW 1003


>gi|104781527|ref|YP_608025.1| error-prone DNA polymerase [Pseudomonas entomophila L48]
 gi|95110514|emb|CAK15222.1| probable DNA polymerase III, alpha subunit [Pseudomonas entomophila
            L48]
          Length = 1026

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 287/1036 (27%), Positives = 457/1036 (44%), Gaps = 76/1036 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P +  L   S++S   GA S + +  +       A+AITD   L   +   Q A A  
Sbjct: 2    STPGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKAHE 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ IIG ++ +                   P +VLLV    GYQ L  L++R       K
Sbjct: 62   LRLIIGSEVQVH----------------QGPKLVLLVQDLHGYQNLCALITRARRR-ARK 104

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             S ++    L E   +GL+ L            +        +     + LFG+RL++  
Sbjct: 105  GSYQLLGEDL-EAHHQGLLAL------------WVAGPDEPSESGPWLRALFGERLWLAA 151

Query: 187  QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              HRG  D+ R + +        +PLVA  +    +       D + A+     V++   
Sbjct: 152  HLHRGADDQARLAWLRAQGLRLGVPLVACGDVHMHARGRRALQDCMTAIRAHCSVAEAGG 211

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                         + +         L+ T+ IAR+C+F L       PR +  E      
Sbjct: 212  LLFANGERHLRPLDQLREL-YPAPLLDETLNIARQCTFELSQLKYRYPRELVPEG----H 266

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR     GL  R   G       +   R  LD EL +I  + +  YFL V D + 
Sbjct: 267  SPASWLRALCEQGLPGRWPAG------PSDKVRAVLDKELALIEELGYESYFLTVHDIVA 320

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A++  I    GRGS A SV  + L IT++DP+   LLFERFL+ +R   PD D+DF  D
Sbjct: 321  FARRQRIL-CQGRGSAANSVVCFVLGITELDPMVHRLLFERFLSRERNEPPDIDVDFEHD 379

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YV ++YG  R A      S  A  A+RDV RAL +   QVD L K        
Sbjct: 380  RREEVIQYVFSRYGRHRAALTAVVSSYHAAGAVRDVARALGLSADQVDALAKCCGRWSDR 439

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                Q +A+           PS+ R+L ++ +L G  RH S H  G VI ++PL QLVP+
Sbjct: 440  IPDDQRLAE----AGFDAQSPSLRRILVLAGELIGFPRHLSQHPGGFVISEQPLDQLVPV 495

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFD 604
                     V Q++   ++  GL+K D L L  L+ L++  D     RG+++ L+ IP D
Sbjct: 496  ENATMEARTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDLLYRHRGIELTLASIPPD 555

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662
            D  TY ++    T+G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V+   
Sbjct: 556  DPATYAMIGRAETMGVFQIESRAQMAMLPRLRPENFYDLVIEVAIVRPGPIQGDMVHPYL 615

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R+  +E +      +  + + T GV ++QEQVM++A + + Y+  EAD LRR+M    +
Sbjct: 616  RRRLRQEPVTYPSEKLREVFQRTLGVPLFQEQVMELAMVAADYTPGEADQLRRSMAAWKR 675

Query: 723  EEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
                +  ++R +SG  +NG     A  IFE +  F  YGF +SHAA++A++ Y ++W+K 
Sbjct: 676  HGGLEPHRQRLVSGMLRNGYELAFAERIFEQIKGFGSYGFPESHAASFALLCYASSWLKC 735

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIY 836
            H P  F  A +           +  Q+AR+  I++ P  V     D  +      +  I 
Sbjct: 736  HQPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVLHSAWDCTLEPVGEGELAIR 795

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  ++G   T +R + +A A +P+  +ED C R     L+ R    L  AGAL     
Sbjct: 796  LGLRQVRGFSETDSRRLEQARAQRPWRDVEDLCLRA---GLDSRARGRLADAGALRALAG 852

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R Q    +  +                 +FA  +      + L        +     + 
Sbjct: 853  NRHQARWQVAAV------------QAQLPLFAQVEPAPEPVVALP---APTVTQDLHADY 897

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              LG     HPL + +  LR +G +   E      G+NI +A +VV +Q+ +T  G  + 
Sbjct: 898  DTLGTTLGPHPLSLLRSRLRALGCRSAGELAGVEDGDNIAVAGLVVGRQRPQTASG--VT 955

Query: 1017 WVTFSEPAKEYEANFF 1032
            +VT  +         +
Sbjct: 956  FVTLEDEHGMVNVVVW 971


>gi|262341080|ref|YP_003283935.1| DNA polymerase III subunit alpha [Blattabacterium sp. (Blattella
            germanica) str. Bge]
 gi|262272417|gb|ACY40325.1| DNA polymerase III subunit alpha [Blattabacterium sp. (Blattella
            germanica) str. Bge]
          Length = 1434

 Score =  622 bits (1603), Expect = e-175,   Method: Composition-based stats.
 Identities = 343/1076 (31%), Positives = 545/1076 (50%), Gaps = 73/1076 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            + H+  H+ +S+L   + + +++D+      PA+ ITD  NL  +  F     +      
Sbjct: 253  YSHIHNHTYFSILYSTVDIRSLVDRAIHFNMPAVGITDYGNLMGSFHFLNAIHSINKKNY 312

Query: 67   ----IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                I+ I+GC++ +   DN       K         V L    +GY  L +L S  +  
Sbjct: 313  PKKLIKGIVGCEVFLS--DNYLQKKFTKDEPDKRYQQVFLSKNKKGYHNLAKLCSLGFTE 370

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                   RI    +++   E LI LTG  +  I         + AEK  L +K+LFGD  
Sbjct: 371  GFYAGIPRIGKKLIEKY-KENLIALTGDLNAEIPYTILNYGERKAEKVFLWWKELFGDDF 429

Query: 183  YVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ L RH   +  +    +++ +  + +  +  NN+ +L + +  AHD+L+ V +    S
Sbjct: 430  YIELLRHGLEEENHVNDILLKFSKKYHVKYIVQNNTFYLDKNEANAHDILLCVKNGEKQS 489

Query: 242  QK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                            + Y KN  EM  IFSDLPE+ +   E+  +          +LP+
Sbjct: 490  TPIGKGKGYRFGFPNHEFYFKNSEEMKKIFSDLPESFDFLEELVNKIESYHLSRKILLPK 549

Query: 295  FIEKE--------CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
            F             D   + E   L+     G + R            ++ ++R+ FEL 
Sbjct: 550  FQIPRSFEDPMDKIDGGNRGENRFLKRITYEGAKERYKNM-------TKEIQERILFELK 602

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
             I R+ + GYFLIV +FIQ A+K NI +GPGRGS AGSV AY + IT+IDP+++ LLFER
Sbjct: 603  TIERIGYPGYFLIVHNFIQQARKMNISIGPGRGSVAGSVVAYCIGITNIDPIKYHLLFER 662

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+S+PD DIDF    RD++I +V  KYG  +VAQIIT+ ++ AK+++RD GR L 
Sbjct: 663  FLNPNRISLPDIDIDFDDRGRDKIIEWVVQKYGKNQVAQIITYATMGAKSSIRDTGRVLD 722

Query: 467  MPYSQVDRLCKLIPNDPAHP--------VSLQAIADDSRFREARLADPSVDRLL----EI 514
            +   + DRL K+IPN  +          +      D +  ++ R    + D L     + 
Sbjct: 723  LSLKETDRLAKMIPNMLSLKTILSENCSIEKIRKEDTNNIQKLRKIAINKDSLEGKVLQQ 782

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            ++ LEG  R    HA GI+I    + + +P+     SDL +TQF+   +E AGL+K DFL
Sbjct: 783  AKILEGTIRSTGIHACGIIISPYNIKEYIPVSVSKESDLLLTQFDNHVVEHAGLLKMDFL 842

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            GLKTLT+++ +++ + ++         P +D +TY L     T+ +FQ ES GM++ L  
Sbjct: 843  GLKTLTIIKDAVNLIKKKRKNNTELSFPLEDEKTYCLFQKGETIAVFQYESPGMQKYLRQ 902

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
            ++PD  +D+IA+ +LYRPGP+  I  + +RK+GKE I    P ++  LKET G+ IYQEQ
Sbjct: 903  LKPDKFDDLIAMTALYRPGPLQYIPNFISRKHGKEAITYDLPEMEEFLKETYGITIYQEQ 962

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VM IAQ ++ +S  +AD+LR AMGKK KE ++  + +FI  A K G SK I   I++   
Sbjct: 963  VMLIAQKIADFSKGDADLLRIAMGKKQKEVLNTMRNQFIDSAMKKGYSKNILEKIWKDWE 1022

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F+ Y FNKSHA  YA I++QTA++K H+P E++A+ ++  M N+ ++  F ++ R+ NI
Sbjct: 1023 YFSCYAFNKSHATCYAYIAFQTAYLKAHFPYEYMASVLSNNMHNIRQLTFFIEECRKMNI 1082

Query: 815  QIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV 872
             ++ P +N     F+V D NRI + L  IKGVG    + I++    + P+ S+ D   R+
Sbjct: 1083 SVIHPDINESDSFFEVTDSNRIRFGLTGIKGVGENAVKIILQEREKNGPYTSILDLVKRI 1142

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQL--------LQSLDNIQKYAQWVEKNRTNKHE 924
            D + +N++ LESL+ +G+LDCF   R Q         L +L+ I ++    +K +     
Sbjct: 1143 DLRIVNKKTLESLILSGSLDCFHIHREQYFHIENDEKLNTLEKIIRFGSKFQKAKNK--- 1199

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                       D+  +    + ++  +   E+ VLG Y S HPLD Y   ++        
Sbjct: 1200 -----STEMKMDQPVIMGCDLWSNVYKLSKEKEVLGVYASAHPLDDYYYEMKYFMNTSLS 1254

Query: 985  ES------VATIRGNNIRLAAMVVSKQQKKT--RKGSRIGWVTFSEPAKEYEANFF 1032
                     +   G  I    ++    +KKT  R G + G     +     E   +
Sbjct: 1255 NLSLISKKESMFVGKKIHTCGILSKI-EKKTYIRSGIKYGLFLLEDYNSSKEFRIY 1309


>gi|291279285|ref|YP_003496120.1| DNA polymerase III subunit alpha [Deferribacter desulfuricans SSM1]
 gi|290753987|dbj|BAI80364.1| DNA polymerase III, alpha subunit [Deferribacter desulfuricans
           SSM1]
          Length = 932

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 371/930 (39%), Positives = 554/930 (59%), Gaps = 31/930 (3%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            F+HL +H+ YSLL+GA+ ++ ++ K+      A+AITD   ++  ++F  +A A  I+P
Sbjct: 4   DFIHLHLHTQYSLLDGAIHISELMKKLKEHGSKAVAITDHGTMYGIVDFYTQALANDIKP 63

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIGC++ +            K        +VLL     G + L  LVS  ++ +      
Sbjct: 64  IIGCEVYVAPDSRFNKNYSKKE--DKSYHLVLLAKNNAGLKNLQYLVSLGHI-EGFYYKP 120

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
           RI    L +  ++GLI L+   +    +    +    A++  L + ++FG D  Y+ +Q 
Sbjct: 121 RIDKELLAKY-SKGLIGLSACLASEPAQKALTDGYAAAKESALEYYEIFGKDNYYLEIQD 179

Query: 189 HRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
           +   ++Y  + + ++++    +P+VATNN  FL++EDY +H VLM + +   ++  +R  
Sbjct: 180 NNIPEQYIVNTIFMEISRETGIPIVATNNCHFLNKEDYSSHQVLMCIQYQQTLNDPNRRD 239

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + + ++K+  EM   F ++ EAL NTV+IA RC+  +      LP +   E       
Sbjct: 240 SHSSELFVKSPEEMWQAFGEIEEALINTVKIAERCNVSMTFGELHLPVYDVPEG----YT 295

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            +  L + A  GL  RLA+  +        Y QRL++EL +I    + GY+LIV DFI +
Sbjct: 296 LKTYLEHIAKEGLHKRLAKVPL---ELHSKYYQRLEYELKIIHEKGYDGYYLIVWDFINF 352

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A+KN IPVGPGRGSGAGS+ AYA+ ITDIDP+++ LLFERFLNP+R SMPDFDID C +R
Sbjct: 353 ARKNKIPVGPGRGSGAGSLVAYAVGITDIDPIKYKLLFERFLNPERKSMPDFDIDICMNR 412

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+EVI YV+NKYGH+RVAQIITFG L A+  +RDVGR L++P   VD++ K+IP  P   
Sbjct: 413 REEVIDYVRNKYGHDRVAQIITFGKLLARGVIRDVGRVLEIPLKTVDKIAKMIPAKPDLT 472

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
           +  +A+  D   +    +      LLE + KLEGL R+A  HAAG+VI D+PL + VP+ 
Sbjct: 473 LK-KALEMDPELKPNIESIEKGKELLEHALKLEGLLRNAGMHAAGVVISDKPLVEYVPLC 531

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
           +  ++D  VTQF    +EK GL+K DFLGLK LT++  +   + + +    D+S IP DD
Sbjct: 532 KG-QNDEVVTQFEKDTLEKVGLVKLDFLGLKNLTVIDYASKLIRKSKDPNFDISAIPLDD 590

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP--IDNIVVYNN 663
            +T+ LL++  T G+FQLESSGM+  L+ ++P   EDII LV+LYRPGP     +  +  
Sbjct: 591 KKTFELLSSGETTGVFQLESSGMKNLLKKLKPTTFEDIIVLVALYRPGPIGSGILDDFLK 650

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
           RK+G +++    P ++ +LKET G+I+YQEQVMQIAQ+++GYSL  AD+LRRAMGKK  E
Sbjct: 651 RKHGLQEVTYPLPELEEILKETYGIIVYQEQVMQIAQIVAGYSLGSADLLRRAMGKKKPE 710

Query: 724 EMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
           EM K ++ F+         GA K G  + IA  IF+L+AKFA+YGFNKSH+AAYA++SYQ
Sbjct: 711 EMAKHRKIFLYGDEKLGIEGAVKRGFDEKIASEIFDLMAKFAEYGFNKSHSAAYAMVSYQ 770

Query: 776 TAWMKTHYPVEFLAASMT--LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
           TA++K HYPVE++A+ +T   E     +I++   +     I ++ P +N    D  V  N
Sbjct: 771 TAYLKAHYPVEYMASIITQEFEFKYNYRIEELIAECNNMGITVLLPDINKSEKDTVVERN 830

Query: 834 RIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
            I   L AI          I+ E + +  F +L+DFC R+D   +N+  + S +  GA+D
Sbjct: 831 LIKVGLKAIHD-NDEIIDKIIFERNRNGEFKNLKDFCKRIDLTIVNKNAISSFIKYGAMD 889

Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
            FG SR QLLQ L++  K     +K +   
Sbjct: 890 SFGKSRKQLLQVLNDTIKLCLQEQKWKKTG 919


>gi|161350055|ref|NP_338003.2| error-prone DNA polymerase [Mycobacterium tuberculosis CDC1551]
 gi|161352461|ref|NP_217887.2| error-prone DNA polymerase [Mycobacterium tuberculosis H37Rv]
 gi|161511527|ref|NP_857046.2| error-prone DNA polymerase [Mycobacterium bovis AF2122/97]
 gi|298526851|ref|ZP_07014260.1| error-prone DNA polymerase [Mycobacterium tuberculosis 94_M4241A]
 gi|308232437|ref|ZP_07416048.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu001]
 gi|71151828|sp|Q7TWL9|DNAE2_MYCBO RecName: Full=Error-prone DNA polymerase
 gi|298496645|gb|EFI31939.1| error-prone DNA polymerase [Mycobacterium tuberculosis 94_M4241A]
 gi|308213944|gb|EFO73343.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu001]
 gi|323717954|gb|EGB27142.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            CDC1551A]
          Length = 1091

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 285/1038 (27%), Positives = 485/1038 (46%), Gaps = 62/1038 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 54   SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 113

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ + G +L +        T + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 114  VRTVFGAELSL------GATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 167

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
               R     L E       +LTG   G + +A        A++ L      F   R+ + 
Sbjct: 168  GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 227

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L  H    D  R + +  LA    + +VAT  + F           + A+     +    
Sbjct: 228  LTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAA 287

Query: 245  RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +    
Sbjct: 288  GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPDG--- 344

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E++ LR+  +AG   R      A   ++Q     ++ EL VIA+++F GYFL+V D 
Sbjct: 345  -HTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 398

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
             ++ + N+I    GRGS A S   YAL +T +DP+   LLFERFL+P R   PD DID  
Sbjct: 399  TRFCRDNDIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 457

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K + +  
Sbjct: 458  SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSHWT 517

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                 +  I +               ++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 518  GQADDVDGIPE---------------QVIDLATQIRNLPRHLGIHSGGMVICDRPIADVC 562

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+   ++VDL+ + 
Sbjct: 563  PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 622

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660
              +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  
Sbjct: 623  LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 682

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAM  K
Sbjct: 683  YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 742

Query: 720  KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            +  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A + + +AW
Sbjct: 743  RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 802

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836
             K H+P  F AA +  +       +    DAR+  + +  P VN              + 
Sbjct: 803  FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 862

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L A++ +G   A  ++    A+ PF SL D  SRV   +L+   +E+L  AGAL CFG
Sbjct: 863  LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 919

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             SR +                   T + + +      +      +      +       +
Sbjct: 920  MSRRE----------ALWAAGAAATGRPDRLPGVGSSS-----HIPALPGMSELELAAAD 964

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     +P    +  L  MG+   E   +   G+ + +A  V  +Q+  T +G  +
Sbjct: 965  VWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQG--V 1022

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             ++   +          P
Sbjct: 1023 TFINLEDETGMVNVLCTP 1040


>gi|148663233|ref|YP_001284756.1| error-prone DNA polymerase [Mycobacterium tuberculosis H37Ra]
 gi|148824579|ref|YP_001289333.1| error-prone DNA polymerase [Mycobacterium tuberculosis F11]
 gi|215405390|ref|ZP_03417571.1| error-prone DNA polymerase [Mycobacterium tuberculosis 02_1987]
 gi|215413269|ref|ZP_03421958.1| error-prone DNA polymerase [Mycobacterium tuberculosis 94_M4241A]
 gi|219559445|ref|ZP_03538521.1| error-prone DNA polymerase [Mycobacterium tuberculosis T17]
 gi|260188426|ref|ZP_05765900.1| error-prone DNA polymerase [Mycobacterium tuberculosis CPHL_A]
 gi|260202555|ref|ZP_05770046.1| error-prone DNA polymerase [Mycobacterium tuberculosis T46]
 gi|260206735|ref|ZP_05774226.1| error-prone DNA polymerase [Mycobacterium tuberculosis K85]
 gi|289444974|ref|ZP_06434718.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            T46]
 gi|289449069|ref|ZP_06438813.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            CPHL_A]
 gi|289571607|ref|ZP_06451834.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            T17]
 gi|289576104|ref|ZP_06456331.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            K85]
 gi|294995861|ref|ZP_06801552.1| error-prone DNA polymerase [Mycobacterium tuberculosis 210]
 gi|297636030|ref|ZP_06953810.1| error-prone DNA polymerase [Mycobacterium tuberculosis KZN 4207]
 gi|297733029|ref|ZP_06962147.1| error-prone DNA polymerase [Mycobacterium tuberculosis KZN R506]
 gi|313660361|ref|ZP_07817241.1| error-prone DNA polymerase [Mycobacterium tuberculosis KZN V2475]
 gi|2661649|emb|CAA15755.1| PROBABLE DNA POLYMERASE III (ALPHA CHAIN) DNAE2 (DNA
            NUCLEOTIDYLTRANSFERASE) [Mycobacterium tuberculosis
            H37Rv]
 gi|31620149|emb|CAD95567.1| PROBABLE DNA POLYMERASE III (ALPHA CHAIN) DNAE2 (DNA
            NUCLEOTIDYLTRANSFERASE) [Mycobacterium bovis AF2122/97]
 gi|148507385|gb|ABQ75194.1| DNA polymerase III subunit alpha DnaE2 [Mycobacterium tuberculosis
            H37Ra]
 gi|148723106|gb|ABR07731.1| DNA polymerase III alpha subunit dnaE2 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis F11]
 gi|289417893|gb|EFD15133.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            T46]
 gi|289422027|gb|EFD19228.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            CPHL_A]
 gi|289540535|gb|EFD45113.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            K85]
 gi|289545361|gb|EFD49009.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            T17]
 gi|326905210|gb|EGE52143.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            W-148]
          Length = 1079

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 285/1038 (27%), Positives = 485/1038 (46%), Gaps = 62/1038 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 42   SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 101

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ + G +L +        T + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 102  VRTVFGAELSL------GATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 155

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
               R     L E       +LTG   G + +A        A++ L      F   R+ + 
Sbjct: 156  GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 215

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L  H    D  R + +  LA    + +VAT  + F           + A+     +    
Sbjct: 216  LTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAA 275

Query: 245  RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +    
Sbjct: 276  GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPDG--- 332

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E++ LR+  +AG   R      A   ++Q     ++ EL VIA+++F GYFL+V D 
Sbjct: 333  -HTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 386

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
             ++ + N+I    GRGS A S   YAL +T +DP+   LLFERFL+P R   PD DID  
Sbjct: 387  TRFCRDNDIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 445

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K + +  
Sbjct: 446  SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSHWT 505

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                 +  I +               ++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 506  GQADDVDGIPE---------------QVIDLATQIRNLPRHLGIHSGGMVICDRPIADVC 550

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+   ++VDL+ + 
Sbjct: 551  PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 610

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660
              +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  
Sbjct: 611  LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 670

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAM  K
Sbjct: 671  YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 730

Query: 720  KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            +  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A + + +AW
Sbjct: 731  RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 790

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836
             K H+P  F AA +  +       +    DAR+  + +  P VN              + 
Sbjct: 791  FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 850

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L A++ +G   A  ++    A+ PF SL D  SRV   +L+   +E+L  AGAL CFG
Sbjct: 851  LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 907

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             SR +                   T + + +      +      +      +       +
Sbjct: 908  MSRRE----------ALWAAGAAATGRPDRLPGVGSSS-----HIPALPGMSELELAAAD 952

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     +P    +  L  MG+   E   +   G+ + +A  V  +Q+  T +G  +
Sbjct: 953  VWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQG--V 1010

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             ++   +          P
Sbjct: 1011 TFINLEDETGMVNVLCTP 1028


>gi|121639297|ref|YP_979521.1| error-prone DNA polymerase [Mycobacterium bovis BCG str. Pasteur
            1173P2]
 gi|224991794|ref|YP_002646483.1| error-prone DNA polymerase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|121494945|emb|CAL73431.1| Probable dna polymerase III (alpha chain) dnaE2 [Mycobacterium bovis
            BCG str. Pasteur 1173P2]
 gi|224774909|dbj|BAH27715.1| error-prone DNA polymerase [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 1079

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 285/1038 (27%), Positives = 485/1038 (46%), Gaps = 62/1038 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 42   SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 101

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ + G +L +        T + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 102  VRTVFGAELSL------GATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 155

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
               R     L E       +LTG   G + +A        A++ L      F   R+ + 
Sbjct: 156  GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 215

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L  H    D  R + +  LA    + +VAT  + F           + A+     +    
Sbjct: 216  LTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAA 275

Query: 245  RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +    
Sbjct: 276  GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPDG--- 332

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E++ LR+  +AG   R      A   ++Q     ++ EL VIA+++F GYFL+V D 
Sbjct: 333  -HTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 386

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
             ++ + N+I    GRGS A S   YAL +T +DP+   LLFERFL+P R   PD DID  
Sbjct: 387  TRFCRDNDIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 445

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K + +  
Sbjct: 446  SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSHWT 505

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                 +  I +               ++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 506  GQADDVDGIPE---------------QVIDLATQIRSLPRHLGIHSGGMVICDRPIADVC 550

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+   ++VDL+ + 
Sbjct: 551  PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 610

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660
              +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  
Sbjct: 611  LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 670

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAM  K
Sbjct: 671  YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 730

Query: 720  KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            +  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A + + +AW
Sbjct: 731  RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 790

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836
             K H+P  F AA +  +       +    DAR+  + +  P VN              + 
Sbjct: 791  FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 850

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L A++ +G   A  ++    A+ PF SL D  SRV   +L+   +E+L  AGAL CFG
Sbjct: 851  LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 907

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             SR +                   T + + +      +      +      +       +
Sbjct: 908  MSRRE----------ALWAAGAAATGRPDRLPGVGSSS-----HIPALPGMSELELAAAD 952

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     +P    +  L  MG+   E   +   G+ + +A  V  +Q+  T +G  +
Sbjct: 953  VWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQG--V 1010

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             ++   +          P
Sbjct: 1011 TFINLEDETGMVNVLCTP 1028


>gi|289555649|ref|ZP_06444859.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            KZN 605]
 gi|289440281|gb|EFD22774.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            KZN 605]
          Length = 1094

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 285/1038 (27%), Positives = 485/1038 (46%), Gaps = 62/1038 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 57   SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 116

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ + G +L +        T + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 117  VRTVFGAELSL------GATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 170

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
               R     L E       +LTG   G + +A        A++ L      F   R+ + 
Sbjct: 171  GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 230

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L  H    D  R + +  LA    + +VAT  + F           + A+     +    
Sbjct: 231  LTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAA 290

Query: 245  RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +    
Sbjct: 291  GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPDG--- 347

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E++ LR+  +AG   R      A   ++Q     ++ EL VIA+++F GYFL+V D 
Sbjct: 348  -HTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 401

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
             ++ + N+I    GRGS A S   YAL +T +DP+   LLFERFL+P R   PD DID  
Sbjct: 402  TRFCRDNDIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 460

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K + +  
Sbjct: 461  SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSHWT 520

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                 +  I +               ++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 521  GQADDVDGIPE---------------QVIDLATQIRNLPRHLGIHSGGMVICDRPIADVC 565

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+   ++VDL+ + 
Sbjct: 566  PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 625

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660
              +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  
Sbjct: 626  LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 685

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAM  K
Sbjct: 686  YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 745

Query: 720  KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            +  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A + + +AW
Sbjct: 746  RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 805

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836
             K H+P  F AA +  +       +    DAR+  + +  P VN              + 
Sbjct: 806  FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 865

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L A++ +G   A  ++    A+ PF SL D  SRV   +L+   +E+L  AGAL CFG
Sbjct: 866  LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 922

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             SR +                   T + + +      +      +      +       +
Sbjct: 923  MSRRE----------ALWAAGAAATGRPDRLPGVGSSS-----HIPALPGMSELELAAAD 967

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     +P    +  L  MG+   E   +   G+ + +A  V  +Q+  T +G  +
Sbjct: 968  VWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQG--V 1025

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             ++   +          P
Sbjct: 1026 TFINLEDETGMVNVLCTP 1043


>gi|253800417|ref|YP_003033418.1| error-prone DNA polymerase [Mycobacterium tuberculosis KZN 1435]
 gi|289747192|ref|ZP_06506570.1| error-prone DNA polymerase [Mycobacterium tuberculosis 02_1987]
 gi|308379492|ref|ZP_07486489.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu010]
 gi|308380670|ref|ZP_07490710.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu011]
 gi|68565552|sp|O50399|DNAE2_MYCTU RecName: Full=Error-prone DNA polymerase
 gi|13883304|gb|AAK47817.1| DNA polymerase III, alpha subunit, putative [Mycobacterium
            tuberculosis CDC1551]
 gi|253321920|gb|ACT26523.1| error-prone DNA polymerase [Mycobacterium tuberculosis KZN 1435]
 gi|289687720|gb|EFD55208.1| error-prone DNA polymerase [Mycobacterium tuberculosis 02_1987]
 gi|308356814|gb|EFP45665.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu010]
 gi|308360762|gb|EFP49613.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu011]
 gi|328460150|gb|AEB05573.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            KZN 4207]
          Length = 1098

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 285/1038 (27%), Positives = 485/1038 (46%), Gaps = 62/1038 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 61   SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 120

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ + G +L +        T + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 121  VRTVFGAELSL------GATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 174

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
               R     L E       +LTG   G + +A        A++ L      F   R+ + 
Sbjct: 175  GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 234

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L  H    D  R + +  LA    + +VAT  + F           + A+     +    
Sbjct: 235  LTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAA 294

Query: 245  RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +    
Sbjct: 295  GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPDG--- 351

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E++ LR+  +AG   R      A   ++Q     ++ EL VIA+++F GYFL+V D 
Sbjct: 352  -HTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 405

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
             ++ + N+I    GRGS A S   YAL +T +DP+   LLFERFL+P R   PD DID  
Sbjct: 406  TRFCRDNDIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 464

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K + +  
Sbjct: 465  SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSHWT 524

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                 +  I +               ++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 525  GQADDVDGIPE---------------QVIDLATQIRNLPRHLGIHSGGMVICDRPIADVC 569

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+   ++VDL+ + 
Sbjct: 570  PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 629

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660
              +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  
Sbjct: 630  LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 689

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAM  K
Sbjct: 690  YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 749

Query: 720  KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            +  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A + + +AW
Sbjct: 750  RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 809

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836
             K H+P  F AA +  +       +    DAR+  + +  P VN              + 
Sbjct: 810  FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 869

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L A++ +G   A  ++    A+ PF SL D  SRV   +L+   +E+L  AGAL CFG
Sbjct: 870  LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 926

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             SR +                   T + + +      +      +      +       +
Sbjct: 927  MSRRE----------ALWAAGAAATGRPDRLPGVGSSS-----HIPALPGMSELELAAAD 971

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     +P    +  L  MG+   E   +   G+ + +A  V  +Q+  T +G  +
Sbjct: 972  VWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQG--V 1029

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             ++   +          P
Sbjct: 1030 TFINLEDETGMVNVLCTP 1047


>gi|134296110|ref|YP_001119845.1| DNA polymerase III subunit alpha [Burkholderia vietnamiensis G4]
 gi|134139267|gb|ABO55010.1| error-prone DNA polymerase, DnaE-like protein [Burkholderia
            vietnamiensis G4]
          Length = 1093

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 278/1069 (26%), Positives = 453/1069 (42%), Gaps = 94/1069 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA     ++ + A     A+AI D  ++   +     A  A + 
Sbjct: 21   PDYAELCCVSNFTFLRGASHAEELVARAAQLGYQALAIADECSMAGIVRAHVAAKEAELP 80

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ-GKQ 127
             I+G +  +   D                S++ L    EGY  L EL++     +   K 
Sbjct: 81   LIVGSRFRLVTADGKLAV-----------SLIALAQNREGYGNLCELITLARTREGVEKG 129

Query: 128  SVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            S R+    L       E L  L       I  A +  + +    +    + +F  R ++ 
Sbjct: 130  SYRLTPRDLDHPEAPFEHLRGLPDCL--VIVEAEYGAADERLIAQADWARTVFPGRAWLG 187

Query: 186  LQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L   HR  D   E  V   A    L +VA              HD L AV        + 
Sbjct: 188  LCLLHRSRDDEHEDAVRWAARETGLRMVALGGVEMHVRSRKPLHDALTAVRLGKP-IAEC 246

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               + P+     RS +        EAL+ TV IA  C F L       P  +  E +   
Sbjct: 247  GFDLAPNAERCLRSRLRLANLYSREALDETVRIAELCDFSLDELRYEYPSEVIPEGE--- 303

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + LR +   G + R  QG           + +++ EL++IA M++  YFL V D +
Sbjct: 304  -TPASYLRKETYLGAQRRFPQGV------PTVVQSQIEHELDLIAAMRYESYFLTVYDIV 356

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+  +I    GRGS A S   Y L IT++DP R +LLFERF++ +R   PD D+DF  
Sbjct: 357  RFARSQHIL-CQGRGSAANSAVCYCLGITEVDPERGNLLFERFISKERGEPPDIDVDFEH 415

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR+EV++Y+  KYG  R A      S ++++ALRD+G+AL +    V+++ +       
Sbjct: 416  QRREEVVQYIYRKYGRHRAALAAAVISYRSRSALRDMGKALGVDLGLVEQVARAHHWWDN 475

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 +   +           P   +   ++  L G  RH S H  G VI    LS+LVP
Sbjct: 476  AKDLAERFTE----AGLAPESPIAKQWANLAHALRGFPRHLSQHVGGFVISHSKLSRLVP 531

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            + R       V +++   +E  GL+K D L L  L+ ++++LDF+++  G   ++  IP 
Sbjct: 532  IERASMEGRSVIEWDKDDLEALGLLKVDVLALGMLSAIRRALDFVSEGTGEPFEMQDIPK 591

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662
            +D ETY +++   T+G+FQ+ES      L  ++P+   D++  +SL RPGPI   +V+  
Sbjct: 592  EDPETYAMISKADTVGVFQIESRAQMTMLPRLKPERFYDLVIEISLIRPGPIQGGMVHPY 651

Query: 663  -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK- 720
              R+ G E +    P ++  L  T GV I+QEQVMQ+A L +G++  EAD LRR+M    
Sbjct: 652  LRRRQGIEPVSYPSPEMEAALSRTLGVPIFQEQVMQVAMLAAGFTPGEADQLRRSMAAWK 711

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             K  + +  +R + G +  G +   A +IF+ +  F +YGF +SHAA++AV+ Y ++W+K
Sbjct: 712  RKGGLGQYYDRILDGMTSRGYTVEFAESIFKQIEGFGEYGFPESHAASFAVLVYASSWLK 771

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------- 833
             H+P  FLAA +  +           QDAR+  ++++   V+       +          
Sbjct: 772  RHHPAAFLAALLNSQPMGFYSPSALVQDARRHGVRVLSVDVSVSDWAATLESEATDGEAG 831

Query: 834  -----------------------------RIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
                                          +   LA  +G+       I EA A +PF+S
Sbjct: 832  GGVGATVGDGARKSKVDKAAGRDPIDRARAVRLGLAQARGLSQEAGWRIEEARAVRPFES 891

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            + D   R     LNR  L++L  AGAL      R + L  +      A   +K+      
Sbjct: 892  VADLALRAS---LNRHDLDALAQAGALASLAGHRREALWQV-----VASLPDKDLLRG-- 941

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                      + +           +    ++ R LG     HPL + +  L        E
Sbjct: 942  ---------AAIEEEAVALPAPREAEDIVSDYRALGLTLGRHPLSLLRERLAAQRFMTAE 992

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               A   G   R   +V  +Q+  T  G  + +VT  +         +P
Sbjct: 993  ILNAYPNGRLARACGIVTVRQRPGTASG--VVFVTLEDETGNVNVIVWP 1039


>gi|260890684|ref|ZP_05901947.1| DNA polymerase III alpha subunit [Leptotrichia hofstadii F0254]
 gi|260859562|gb|EEX74062.1| DNA polymerase III alpha subunit [Leptotrichia hofstadii F0254]
          Length = 1185

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 357/1084 (32%), Positives = 579/1084 (53%), Gaps = 85/1084 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL++H+ YSLLEG   ++  ++K       A+AITDT ++F A+EF +K   AGI+PI
Sbjct: 5    FVHLKLHTEYSLLEGVGKIDEYVEKAKKIGVKALAITDT-SMFGAIEFFKKCKNAGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG ++ +D  + +              S+ LL     GY+ L +L S  Y     +   +
Sbjct: 64   IGLEVFLDGLEKVGE-----------FSLTLLAKNQNGYKNLSKLSSISYSR-FTRNRNK 111

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I    L++  ++ L +L+GG +  + +      +    + +    K FGD  ++ +    
Sbjct: 112  IKYDELKKY-SDDLYILSGGINSEVVKGILDLENTQVRRVIEKLGKDFGDNFFIEVPAVE 170

Query: 191  GYDRYRESQVVQLAYTHEL-PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              ++ R   +  +   ++    V TN+  + + +D     ++ ++   + +  +      
Sbjct: 171  RLEKAR-KMLFDIVRKNKFDNFVITNDVYYPNRKDAVLQKIVESIKEGSKIDTEKSENSE 229

Query: 250  ---------PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                      ++ ++   E           + N  +I   C+   + H    P++   + 
Sbjct: 230  ILYDDLYLKSENEIEKSFENKEYSEFYETGINNVEKIVENCNVDFEFHHFKFPKYSLPQ- 288

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA-------------------------- 334
                  E+  LRN    GL  +  + +++                               
Sbjct: 289  ---NVSEKEFLRNLVFEGLFHKYLKKSVSDSEKLQLDKNFEIIEKEIAKDEIAGQKLKEV 345

Query: 335  -----------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                       ++  +R ++EL +I +M ++GYF+IV DFI+++++N + VGPGRGS AG
Sbjct: 346  KIREELLKHNLENVLERAEYELEIIDKMGYNGYFIIVWDFIKFSRENGVYVGPGRGSAAG 405

Query: 384  SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
            S+ +YAL IT+IDPL ++L+FERFLNP+R+SMPD DIDF Q++R+ VI YV NKYG E V
Sbjct: 406  SIVSYALNITEIDPLEYNLIFERFLNPERISMPDIDIDFDQEQREIVINYVVNKYGAEYV 465

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
            A IITFG+L+A+ A+RDVGR L +   +VD++ K+I   P +     A+ +    R+   
Sbjct: 466  AHIITFGTLKARLAIRDVGRVLNVSLVKVDKIAKMI---PFNTELKDALNNIPEIRKMYE 522

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWI 563
             D  + R+++ S KLEG  RHAS HAAG+VI    LS  +P Y D ++ +  TQ+ MK +
Sbjct: 523  TDREIRRVIDYSLKLEGKVRHASVHAAGVVISKDVLSDEIPTYSDGKTKIVSTQYQMKEL 582

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            E+ G++K DFLGLK LT+L+K+++    +R +K+DL+ I  +D +TY LLT   T+G+FQ
Sbjct: 583  EELGILKMDFLGLKNLTILRKTVENIEKRRKIKIDLNDISLNDEKTYELLTKADTMGVFQ 642

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDP 680
             ES+G+R  ++ M+ +  EDIIAL++LYRPGP+ + +   + N KN K +I  I   +  
Sbjct: 643  CESAGIRSLMKKMKIEKFEDIIALLALYRPGPLRSGMVDDFINVKNNKTEIKYIDNSLKY 702

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +L+ET G+I+YQEQVM+I   ++ YSL EAD LRRA+GKK  E M K +E+F++ A KNG
Sbjct: 703  ILEETYGIILYQEQVMKIVSEMANYSLGEADELRRAIGKKNPELMKKNREKFVTNAEKNG 762

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            +    A  I++L+ KF  YGFNKSH+AAYA+I Y TA+ K +YP+EF AA MT E+ N++
Sbjct: 763  VLSKKANEIYDLVEKFGGYGFNKSHSAAYALIVYWTAYFKVNYPLEFFAAIMTTEVHNLD 822

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----------IYYSLAAIKGVGTTTA 850
            +   F  +AR+  I I  P VN    DF++ +N+          I + L AIKGVG    
Sbjct: 823  RFVVFVNEAREKGINIFLPDVNLSDYDFEIEENQADNENFGKVGIRFGLFAIKGVGAALI 882

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I +   +  F S +DF  R+    + ++ LESL+ +GALD    +R +  +S+D + +
Sbjct: 883  NEIKKERKNGKFVSYKDFGYRMKQNGITKKQLESLILSGALDGLDGNRFEKYKSIDKVLE 942

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            Y+Q   ++  +    +F  +K    D   +EK       V  +NE+  LG Y S HPL+ 
Sbjct: 943  YSQKKYESEEDFQLILFGGKKEISVD-FQMEKSEEFPQKVLLQNEKEYLGIYVSSHPLNE 1001

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGWVTFSEPAKEYEA 1029
             K ++  +      E  +      +R+  +V + ++  TR G   +      +  K  E 
Sbjct: 1002 KKNLINIISHNKISEI-SQKELKKVRIIGIVKNVKKFATRAGKEPMVKFEMEDFQKSIEV 1060

Query: 1030 NFFP 1033
              FP
Sbjct: 1061 ICFP 1064


>gi|257125251|ref|YP_003163365.1| DNA polymerase III subunit alpha [Leptotrichia buccalis C-1013-b]
 gi|257049190|gb|ACV38374.1| DNA polymerase III, alpha subunit [Leptotrichia buccalis C-1013-b]
          Length = 1185

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 356/1090 (32%), Positives = 580/1090 (53%), Gaps = 87/1090 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +E    FVHL++H+ YSLLEG   ++  ++K       A+AITDT ++F A+EF +K   
Sbjct: 1    MENK--FVHLKLHTEYSLLEGVGKIDEYVEKAKKTGVKALAITDT-SMFGAIEFFKKCKN 57

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AGI+PIIG ++ +D  + +              S+ LL     GY+ L +L S  Y    
Sbjct: 58   AGIKPIIGLEVFLDGLEKVGE-----------FSLTLLAKNQNGYKNLSKLSSISYSR-F 105

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +   +I    L++  ++ L +L+GG +  + +      +    + +    K FGD  ++
Sbjct: 106  TRNRNKIKYDELKKY-SDDLYILSGGINSEVVKGILDLENTQVRRVVEKLGKDFGDNFFI 164

Query: 185  NLQRHRGYDRYRESQVVQLAYTHEL-PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +      ++ R   +  +   ++    V TN+  + + +D     ++ ++   + +  +
Sbjct: 165  EVPAVERLEKAR-KMLFDIVRKNKFDNFVITNDVYYPNRKDAVLQKIVESIKEGSKIDTE 223

Query: 244  DRPRVT---------PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                            ++ ++   E           + N  +I   C+   + H    P+
Sbjct: 224  KSENSEILYDDLYLKSENEIEKSFENKEYSEFYETGINNVEKIMENCNVDFEFHHFKFPK 283

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA-------------------- 334
            +   +       E+  LRN    GL  +  + +++                         
Sbjct: 284  YSLPQ----NISEKEFLRNLVFEGLFHKYLKKSVSDSEKLQLDKNFEIIQKEIAKDEIAG 339

Query: 335  -----------------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
                             ++  +R ++EL +I +M ++GYF+IV DFI+++++N + VGPG
Sbjct: 340  QKLKEVKIREELLKNNLENVLERAEYELEIIDKMGYNGYFIIVWDFIKFSRENGVYVGPG 399

Query: 378  RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
            RGS AGS+ +YAL IT+IDPL ++L+FERFLNP+R+SMPD DIDF Q++R+ VI YV NK
Sbjct: 400  RGSAAGSIVSYALNITEIDPLEYNLIFERFLNPERISMPDIDIDFDQEQREIVINYVVNK 459

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            YG E VA IITFG+L+A+ A+RDVGR L +   +VD++ K+I   P +     A+ +   
Sbjct: 460  YGAEYVAHIITFGTLKARLAIRDVGRVLNVSLVKVDKIAKMI---PFNTELKDALNNIPE 516

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
            FR+    D  + ++++ S KLEG  RHAS HAAG+VI    LS  +P Y D ++ +  TQ
Sbjct: 517  FRKMYGTDREIKKVIDYSLKLEGKVRHASVHAAGVVISKDVLSDEIPTYSDGKTKIVSTQ 576

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKG 616
            + MK +E+ G++K DFLGLK LT+L+K+++    +R  K+ L+ IP +D +TY LLT   
Sbjct: 577  YQMKELEELGILKMDFLGLKNLTILRKTVENIEKRRKTKIVLNDIPLNDEKTYELLTKAD 636

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI 674
            T+G+FQ ES+G+R  ++ M+ +  EDIIAL++LYRPGP+ + +   + N KN + +I  I
Sbjct: 637  TMGVFQCESAGIRSLMKKMKIEKFEDIIALLALYRPGPLRSGMVDDFINVKNNRTEIKYI 696

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
               +  +L+ET G+I+YQEQVM+I   ++ YSL EAD LRRA+GKK  E M K +E+F++
Sbjct: 697  DDSLKYILEETYGIILYQEQVMKIVSEMANYSLGEADELRRAIGKKNPELMKKNREKFVT 756

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             A KNG+    A  I++L+ KF  YGFNKSH+AAYA+I Y TA+ K +YP+EF AA +T 
Sbjct: 757  NAEKNGVFSKKANEIYDLVEKFGGYGFNKSHSAAYALIVYWTAYFKANYPLEFFAAIITT 816

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----------NRIYYSLAAIKG 844
            E+ N+++   F  +A++  I I  P VN    DF++ +            I + L A+KG
Sbjct: 817  EVHNLDRFVVFVNEAKEKGINIFLPDVNLSDYDFEIEESFENNNEIKKMGIRFGLFAVKG 876

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G      I +   +  F S EDF  R+    + ++ LES + +GALD    +R +  +S
Sbjct: 877  IGAALINEIKKERENGDFSSYEDFVYRMKQNGITKKQLESFILSGALDKLNGNRFEKYKS 936

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +D I +Y+Q   ++  +    +F+ EK  F  K  +EK       V  ENE+  LG Y S
Sbjct: 937  IDKILEYSQKKYESEEDLQMILFSGEK-KFKGKFEMEKADEFPQKVLLENEKEYLGIYVS 995

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGWVTFSEP 1023
             HPL+  K ++  +      E  +      +R+  +V + ++  TR G   +      + 
Sbjct: 996  SHPLNEKKRLINIISHNKISEI-SQKELKKVRIIGIVKNVKKFATRAGKEPMVKFEMEDF 1054

Query: 1024 AKEYEANFFP 1033
             K  E   FP
Sbjct: 1055 QKNIEVVCFP 1064


>gi|51473946|ref|YP_067703.1| DNA polymerase III subunit alpha [Rickettsia typhi str. Wilmington]
 gi|81826280|sp|Q68VX1|DPO3A_RICTY RecName: Full=DNA polymerase III subunit alpha
 gi|51460258|gb|AAU04221.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str.
            Wilmington]
          Length = 1180

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 406/1080 (37%), Positives = 602/1080 (55%), Gaps = 78/1080 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              F+HL+  SSYS LE AL++  +++     + PA+ ++D  NLF +LEF+  A    +Q
Sbjct: 3    SEFIHLRTQSSYSFLESALTIEKVVELALLHKMPALCLSDRGNLFGSLEFALYAVKKKLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I    N+               I+L+     GY+ L++L S  +  +  K  
Sbjct: 63   PIHGVILNIQYDINV------------FAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L +   EGLI L   + G + +       + A       + + GDR Y  + R
Sbjct: 111  DHINFEDLIKY-QEGLIALCCYTDGIVGKCLLARKQEHAIMFARRLQAILGDRFYFEIMR 169

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +    E+  +Q+A    +P+VATN  LF  +  + AHDVL+ ++        DR  
Sbjct: 170  HDLPEEQFIENSYIQIASELSIPIVATNKVLFSEKSMHYAHDVLLCISEGVTKEYPDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y K+ +EM  +FSDLP A++NTV +  RC F     A      +          E
Sbjct: 230  VSENCYFKSPAEMKKLFSDLPNAIQNTVNLRERCYF-----AAHPNPPMLPNFSTQDISE 284

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360
               +R  A  GL  RL     A+    +       +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TYLIRKYAKEGLLARLVTKFKAENISREHQEKLKTEYFTRLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+KK+ I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKKHGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV +KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405  DFCQERREEVINYVCSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKCADYLTELVP 464

Query: 481  NDPAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PVS  QAI +      A               +  +L+ S  LEGL+RH+STHAA
Sbjct: 465  FSAVNPVSLEQAIREVPELANAAKGKGLYNLEGDAELIKLVLDTSLILEGLHRHSSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  SD+ +  ++MK+ E AGLIKFDFLGL+TLT++      L 
Sbjct: 525  GIVIAGTDLVDIVPVYKDANSDMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITNCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            ++G+++D   + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  EQGIEIDFDDMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLQQPDYLHKLLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIK+EM++Q+E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAAAY 
Sbjct: 705  DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISQSQAKSIFATVAKFAGYGFNKAHAAAYG 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            VISYQTA++K +YP EFL A + LE++N +KI  F Q+A+   I+I+ P++N     F V
Sbjct: 765  VISYQTAYLKANYPAEFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSV 824

Query: 831  -----------------------------------GDNRIYYSLAAIKGVGTTTARHIME 855
                                                ++ I ++L AIKGV     + + +
Sbjct: 825  KSSDTVITHNTKPLIPRLNNEIDIKDTAVKSLYYKDESTIIFALGAIKGVTPNFGKLVTD 884

Query: 856  ASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
                   F S+ DF  R+  K +N ++LE+L+ AG  D    +R+QL  S+  +  Y+  
Sbjct: 885  ERKARGAFKSITDFIERLPPKSINSKLLENLIKAGCFDELHDNRLQLFLSVPKLIAYSTS 944

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
              + + +   ++    K +      L   +  + +     E   +G + S HPL  Y+ I
Sbjct: 945  YHQEQESNQFSL---IKVSSLSPTILVSSNYADKNTLAFYEFESMGLFISNHPLTEYQEI 1001

Query: 975  LRKMGIKGYEESVA-TIRGNN-IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              ++ I    +       G N + LA ++  K  + + +G R   +  S+P   +E   F
Sbjct: 1002 FSRLNILNTRDLYNKLPNGTNQVTLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELTIF 1060


>gi|15604610|ref|NP_221128.1| DNA polymerase III subunit alpha [Rickettsia prowazekii str. Madrid
            E]
 gi|6226600|sp|O05974|DPO3A_RICPR RecName: Full=DNA polymerase III subunit alpha
 gi|3861305|emb|CAA15204.1| DNA POLYMERASE III, ALPHA CHAIN (dnaE) [Rickettsia prowazekii]
 gi|292572428|gb|ADE30343.1| DNA polymerase III alpha chain [Rickettsia prowazekii Rp22]
          Length = 1182

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 405/1082 (37%), Positives = 599/1082 (55%), Gaps = 80/1082 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  +++     + PA+ ++D  NLF +LEFS  A    +Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKVVELALLHKMPALCLSDRGNLFGSLEFSLYAVKKKLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I    N                I+L+     GY+ L++L S  +  +  K  
Sbjct: 63   PIHGVILNIQYDIN------------AFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L +   EG+I L   + G + +       + A       + + GDR Y  + R
Sbjct: 111  EHIGFEDLIKY-QEGVIALCCYTDGIVGKCLLARKQEQAILFARRLQAILGDRFYFEIMR 169

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +    E+  +Q+A    +P+VATN  LF  +  + AHDVL+ ++        DR  
Sbjct: 170  HDLPEEQFIENSYIQIASELSIPIVATNKVLFSEKSMHYAHDVLLCISEGVTKEYPDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y K+ +EM  +FSDLP A++NT+ +  RC F     A      +          E
Sbjct: 230  VSENCYFKSPAEMRKLFSDLPNAIQNTINLRERCYF-----AAHPNPPMLPNFSTQDISE 284

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360
               +R  A  GL  RL     A+    +       +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TYLIRKYATEGLLARLVTKFKAENISLEHQEKLKTEYFTRLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKKQGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV++KYG  RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405  DFCQERREEVINYVRSKYGPNRVGQIITFGKMQAKAVIKDVARVLSLPYKLADYLTELVP 464

Query: 481  NDPAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PVS  QAI +      A   +           +  +L+ S  LEGL+RH+STHAA
Sbjct: 465  FSAINPVSLEQAIREVPELANAAKGNGLYNLEGDAELIKLVLDTSLILEGLHRHSSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  +D+ +  ++MK+ E AGLIKFDFLGL+TLT++      L 
Sbjct: 525  GIVIAGTDLVDIVPVYKDANADMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITNCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            ++G+K+D   + FDD +TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  EQGIKIDFDDMTFDDKKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L++P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLQQPDYLHKLLEPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIK+EM++Q+E F+ GA  N IS + A +IF  +AKFA YGFNK+HAAAY 
Sbjct: 705  DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISPSQAKSIFSTVAKFAGYGFNKAHAAAYG 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            VISYQTA++K +YP EFL A + LE++N +KI  F Q+A+   I+I+ P++N     F V
Sbjct: 765  VISYQTAYLKANYPAEFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSV 824

Query: 831  -------------------------------------GDNRIYYSLAAIKGVGTTTARHI 853
                                                  ++ I ++L AIKGV     + +
Sbjct: 825  KSSNTVITHSTKSVISRLNCDIKKIAKDTAVKPLYCKDESTIIFALGAIKGVTANFGKLV 884

Query: 854  MEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
             +       F S+ DF  R+  K +N ++LE+L+ AG  D    +R+QL  S+  +  Y+
Sbjct: 885  TDERKARGAFKSITDFIERLPPKSINSKLLENLIKAGCFDELHDNRLQLFLSIPKLIAYS 944

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
                + + +   ++    K +      L      + +     E   +G + S HPL  Y+
Sbjct: 945  TSYHQEQESNQFSL---IKVSSLSPTILVSSDYADKNTLAFYEFEAMGLFLSNHPLTEYQ 1001

Query: 973  PILRKMGIKGYEESVA-TIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             I  ++ I    +       G   + LA ++  K  + + +G R   +  S+P   +E  
Sbjct: 1002 GIFSRLNILNTRDLYNKLPNGTNRVTLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELT 1060

Query: 1031 FF 1032
             F
Sbjct: 1061 IF 1062


>gi|308371322|ref|ZP_07424578.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu003]
 gi|308372518|ref|ZP_07428948.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu004]
 gi|308376093|ref|ZP_07446045.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu007]
 gi|308377322|ref|ZP_07441858.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu008]
 gi|308378295|ref|ZP_07482143.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu009]
 gi|308329123|gb|EFP17974.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu003]
 gi|308332959|gb|EFP21810.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu004]
 gi|308344313|gb|EFP33164.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu007]
 gi|308348245|gb|EFP37096.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu008]
 gi|308352970|gb|EFP41821.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu009]
          Length = 1091

 Score =  618 bits (1594), Expect = e-174,   Method: Composition-based stats.
 Identities = 284/1038 (27%), Positives = 484/1038 (46%), Gaps = 62/1038 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 54   SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 113

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ + G +L +        T + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 114  VRTVFGAELSL------GATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 167

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
               R     L E       +LTG   G + +A        A++ L      F   R+ + 
Sbjct: 168  GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 227

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L  H    D  R + +  LA    + +V T  + F           + A+     +    
Sbjct: 228  LTHHGHPLDDERNAALAGLAPRFGVGIVTTTGAHFADPSRGRLAMAMAAIRARRSLDSAA 287

Query: 245  RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +    
Sbjct: 288  GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPDG--- 344

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E++ LR+  +AG   R      A   ++Q     ++ EL VIA+++F GYFL+V D 
Sbjct: 345  -HTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 398

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
             ++ + N+I    GRGS A S   YAL +T +DP+   LLFERFL+P R   PD DID  
Sbjct: 399  TRFCRDNDIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 457

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K + +  
Sbjct: 458  SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSHWT 517

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                 +  I +               ++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 518  GQADDVDGIPE---------------QVIDLATQIRNLPRHLGIHSGGMVICDRPIADVC 562

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+   ++VDL+ + 
Sbjct: 563  PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 622

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660
              +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  
Sbjct: 623  LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 682

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAM  K
Sbjct: 683  YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 742

Query: 720  KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            +  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A + + +AW
Sbjct: 743  RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 802

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836
             K H+P  F AA +  +       +    DAR+  + +  P VN              + 
Sbjct: 803  FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 862

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L A++ +G   A  ++    A+ PF SL D  SRV   +L+   +E+L  AGAL CFG
Sbjct: 863  LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 919

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             SR +                   T + + +      +      +      +       +
Sbjct: 920  MSRRE----------ALWAAGAAATGRPDRLPGVGSSS-----HIPALPGMSELELAAAD 964

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     +P    +  L  MG+   E   +   G+ + +A  V  +Q+  T +G  +
Sbjct: 965  VWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQG--V 1022

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             ++   +          P
Sbjct: 1023 TFINLEDETGMVNVLCTP 1040


>gi|308373723|ref|ZP_07433455.2| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu005]
 gi|308336574|gb|EFP25425.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
            SUMu005]
          Length = 1098

 Score =  618 bits (1594), Expect = e-174,   Method: Composition-based stats.
 Identities = 284/1038 (27%), Positives = 484/1038 (46%), Gaps = 62/1038 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 61   SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 120

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ + G +L +        T + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 121  VRTVFGAELSL------GATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 174

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
               R     L E       +LTG   G + +A        A++ L      F   R+ + 
Sbjct: 175  GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 234

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L  H    D  R + +  LA    + +V T  + F           + A+     +    
Sbjct: 235  LTHHGHPLDDERNAALAGLAPRFGVGIVTTTGAHFADPSRGRLAMAMAAIRARRSLDSAA 294

Query: 245  RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +    
Sbjct: 295  GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPDG--- 351

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E++ LR+  +AG   R      A   ++Q     ++ EL VIA+++F GYFL+V D 
Sbjct: 352  -HTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 405

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
             ++ + N+I    GRGS A S   YAL +T +DP+   LLFERFL+P R   PD DID  
Sbjct: 406  TRFCRDNDIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 464

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K + +  
Sbjct: 465  SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSHWT 524

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                 +  I +               ++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 525  GQADDVDGIPE---------------QVIDLATQIRNLPRHLGIHSGGMVICDRPIADVC 569

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+   ++VDL+ + 
Sbjct: 570  PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 629

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660
              +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  
Sbjct: 630  LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 689

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAM  K
Sbjct: 690  YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 749

Query: 720  KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            +  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A + + +AW
Sbjct: 750  RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 809

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836
             K H+P  F AA +  +       +    DAR+  + +  P VN              + 
Sbjct: 810  FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 869

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L A++ +G   A  ++    A+ PF SL D  SRV   +L+   +E+L  AGAL CFG
Sbjct: 870  LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 926

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             SR +                   T + + +      +      +      +       +
Sbjct: 927  MSRRE----------ALWAAGAAATGRPDRLPGVGSSS-----HIPALPGMSELELAAAD 971

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     +P    +  L  MG+   E   +   G+ + +A  V  +Q+  T +G  +
Sbjct: 972  VWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQG--V 1029

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             ++   +          P
Sbjct: 1030 TFINLEDETGMVNVLCTP 1047


>gi|186476725|ref|YP_001858195.1| DNA polymerase III subunit alpha [Burkholderia phymatum STM815]
 gi|184193184|gb|ACC71149.1| DNA polymerase III, alpha subunit [Burkholderia phymatum STM815]
          Length = 1049

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 260/1039 (25%), Positives = 447/1039 (43%), Gaps = 66/1039 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S+++ L+GA     + ++ +      +AITD  +L   +     A   G+ 
Sbjct: 9    PAYAELFCLSNFTFLQGASHAEELAERASQLGYSGLAITDECSLAGVVRAHVAAKEKGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             +IG    +   D                 ++LL    EGY  L EL++        K  
Sbjct: 69   LVIGSYFRLRNADGT-----------PAFGLILLAQNREGYGNLSELITLARTR-APKGE 116

Query: 129  VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L     E   L  +    +  +    F  +  V + ++    + F  R +V L
Sbjct: 117  YRLTPHDLSRPDRENAHLRGMPDCLAILVPD--FPANEAVLDAQIEWLDETFQGRAWVGL 174

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS-QKD 244
              H R  D      V  +A    +P+VA  + +          D + A+     V     
Sbjct: 175  VLHQRAMDDIHRGSVEYVANQQNVPVVALGHVVMHVRSRKPLQDTMTAIRVGRPVHECGY 234

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                  + +L++R  + +++ D       TV                L      E     
Sbjct: 235  ELAPNAEQHLRSRLRIANLYPDH------TVRETISVLSRCAFSLDQLRYEYPDELVPAG 288

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  LR +   G + R   G         + +Q+++ EL +IA + +  YFL V D +
Sbjct: 289  YTPTQYLRQETYIGAQHRFPSG------IPFNVQQQIEHELALIADLGYEPYFLTVYDIV 342

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+  +I    GRGS A S   Y L +T++DP R ++LFERF++ +R   PD D+DF  
Sbjct: 343  RYARSQHIL-CQGRGSAANSAVCYCLGVTEVDPARGNMLFERFISKERGEPPDIDVDFEH 401

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR+EVI+Y+  KYG +R A      + + + ALR+ G+AL +    VD + K       
Sbjct: 402  QRREEVIQYIYRKYGRDRAAIAAAVSTYRPRGALRETGKALGVDPQLVDTVAKSHHWFDT 461

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                L+   +           P +     ++ +L    RH S H+ G VI    L++LVP
Sbjct: 462  SHDLLKRFEES----GLDPEKPLIQAWARLAAQLLNFPRHLSQHSGGFVISRGKLTRLVP 517

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            +     +D  V +++   +E  GL+K D L L  L+ ++++LD +A R   + ++  IP 
Sbjct: 518  VENAAMADRSVIEWDKDDLEALGLLKVDVLALGMLSAIRRTLDLVADRTGERFEMQDIPA 577

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVY 661
            +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI    +  Y
Sbjct: 578  EDKATYDMISNADTIGVFQIESRAQMSMLPRLRPQKFYDLVIEVAIVRPGPIQGGAVHPY 637

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK- 720
              R+   E +      +   LK T GV I+QEQVMQ+A L +G++  EAD LRRAM    
Sbjct: 638  LRRRQKLEPVSYPSEQLKIALKRTLGVPIFQEQVMQVAILAAGFTPGEADQLRRAMAAWK 697

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             K  ++K  +R ++G  + G  ++ A  IFE +  F +YGF +SHAA++A++ Y ++W+K
Sbjct: 698  RKGGLEKYYDRIVNGMRERGYEQSFAEAIFEQIKGFGEYGFPESHAASFALLVYASSWLK 757

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNR 834
             H P  FLAA +  +        +  QDAR+  ++++P  V     D  +          
Sbjct: 758  CHEPEAFLAAMLNSQPMGFYSPSQLVQDARRHGVRVLPVDVTVSGWDSSLETIRGQQRPA 817

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +   L+ ++G+    A  I  A A +PF S+ D   R    +LNRR L  L  A AL   
Sbjct: 818  VRLGLSLLRGMKDGAAERIENARAVRPFRSVHDLARRA---QLNRRDLHVLADANALSSL 874

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +R + L    ++         +     ++                +    + +     
Sbjct: 875  AGNRREALWH--SVAAVPDKDMLSVAAVQDD--------------TPELGAPSEAQDIVA 918

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            + R +G     HPL++ +P+L +  +           G   R   +V  +Q+  T KG  
Sbjct: 919  DYRSVGLTLGRHPLELLRPVLLEQRLLPASTLRDYRNGRLARGCGIVTVRQRPGTAKG-- 976

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + +VT  +         +P
Sbjct: 977  VLFVTIEDETGNVNVIIWP 995


>gi|229489515|ref|ZP_04383378.1| DNA polymerase III, alpha subunit family [Rhodococcus erythropolis
            SK121]
 gi|229323612|gb|EEN89370.1| DNA polymerase III, alpha subunit family [Rhodococcus erythropolis
            SK121]
          Length = 1072

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 282/1032 (27%), Positives = 468/1032 (45%), Gaps = 61/1032 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS++S L+GA     ++++       AIA+TD +  +  + F++ A   G++ +
Sbjct: 38   YAELHAHSAFSFLDGASPPEELVEEAVRLGLEAIAVTDHDGFYGVVRFAEAAREWGMRTV 97

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +D         +  T  P    +++L    EGY+RL   ++  +L    K  ++
Sbjct: 98   FGAELSLD------SVPRTGTADPGGTHLLVLARGQEGYRRLSREIAAAHLAGGEKGKLQ 151

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 L E       +LTG   G + +A      + A   L    + FG +R+ V L  H
Sbjct: 152  YDYDVLTEAAGGHWQILTGCRKGHVRQALTSGGREAAADALGDLVERFGAERVSVELTHH 211

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
                D  R + + +LA  H L  VAT  + F +         + AV     + +      
Sbjct: 212  GLAEDDERNAVLAELAREHGLRTVATTAAHFAAPPRRRLAMAMAAVRSRQSLDEAAGWLA 271

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T   +L++ +EM ++FS  PEA+    ++ R C+F L++ AP LP F           E
Sbjct: 272  PTGGAHLRSGAEMAALFSLYPEAVSGAADLGRECAFDLKLIAPKLPPFDVPAG----HTE 327

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR   + G   R           A    ++L+ EL +I  + F GYFL+V D + + 
Sbjct: 328  ASWLRELTMVGALERYGPP-----EGAPKAYKQLEHELAIIEGLNFPGYFLVVHDIVSFC 382

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N+I    GRGS A S   YA+ IT++DP+R  LLFERFL P+R   PD D+D   DRR
Sbjct: 383  KNNDIL-CQGRGSAANSAVCYAIGITNVDPVRNKLLFERFLAPERDGPPDIDVDIESDRR 441

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +E I++V  KYG    AQ+    + + K+++RD+ RAL     Q D   K +        
Sbjct: 442  EEAIQHVYAKYGRTYAAQVANVITYRGKSSVRDMARALGFSQGQQDAWSKQVGRWGGIDK 501

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            +                      +LE++ ++EG  RH   H+ G+VI DRP++ + P+  
Sbjct: 502  N--------------ADTDIPRPVLELAAQIEGYPRHLGIHSGGMVICDRPIADVCPVEW 547

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
               ++  V Q++      AGL+KFD LGL  L+ L   +D +A+   + VDL+ +   + 
Sbjct: 548  ARMANRSVLQWDKDDCAAAGLVKFDLLGLGMLSALHYMMDLVAEHKGITVDLAQLDLSET 607

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664
              Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y  R
Sbjct: 608  AVYEMLQRADSVGVFQVESRAQMATLPRLKPRNFYDLVVEVALIRPGPIQGGSVHPYIRR 667

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723
            +N  E +   HP ++  L+ T GV ++QEQ+MQ+A  ++G++ SEAD LRRAM  K+  E
Sbjct: 668  RNKLEPVSYDHPSLEKALERTLGVPLFQEQLMQMAVDVAGFTPSEADQLRRAMGSKRSTE 727

Query: 724  EMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            +M++ + RF  G    +GI   +A  I+E L  FA++GF +SH+ ++A + + ++W K H
Sbjct: 728  KMEQLRARFYQGMRDLHGIGDEVADRIYEKLYAFANFGFPESHSQSFAALVFYSSWFKLH 787

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIYYSLA 840
            +P  F A  +  +       +    DAR+  +Q+    +N       V      +   L 
Sbjct: 788  HPAAFCAGLLRAQPMGFYSPQSLVADARRHGVQVHGADINVSLAHATVEAGGFEVRLGLG 847

Query: 841  AIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             ++ +G   A  I+E      PF S  D   RV+   L     ESL  AGAL  FG SR 
Sbjct: 848  EVRNIGDALAEKIVEQRDLGGPFTSFLDLTGRVE---LTTAQAESLATAGALASFGISRR 904

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            + L +       A     +R                  +T       +       +    
Sbjct: 905  EALWA----AGAAAGERPDRLPG-----------IGASVTAPTLPGMSDVELAAADVWAT 949

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G     +P    +P L  +G+      +    G+ + +   V  +Q+  T  G  + ++ 
Sbjct: 950  GVSPDTYPTQFLRPQLDALGVVPASRLLDIPDGDRVLVGGAVTHRQRPATAAG--VTFIN 1007

Query: 1020 FSEPAKEYEANF 1031
              +         
Sbjct: 1008 LEDETGMVNVVC 1019


>gi|218290516|ref|ZP_03494625.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
            LAA1]
 gi|218239419|gb|EED06615.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
            LAA1]
          Length = 1039

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 311/1033 (30%), Positives = 497/1033 (48%), Gaps = 52/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  HS YS L+GA S+  ++ + AA   PA+A+TD N +    EF + A   G++PI
Sbjct: 2    FVHLHCHSPYSFLDGASSIETLVAQAAAQGMPALALTDRNTIAGQPEFHRLAALYGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L ++                    +V+L   A+G++ L EL++RM++  + +   R
Sbjct: 62   AGAELTLEDGS----------------QLVVLAEHAKGFRHLCELLTRMHVDARDRADPR 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +  + L E   EGL++L+GG  G + RA    +   A + +  ++ +FGDR Y+      
Sbjct: 106  LREADLFER-NEGLLILSGGLRGFVQRALARRAYGDARRFVERYRDVFGDRFYLEWTADG 164

Query: 191  GYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
                  R   ++ LA    +P VA       S E+   HDVL  +     +      R  
Sbjct: 165  LPGCARRMRDLLDLAEATGVPAVAATEVRAASPEEVAVHDVLTCIRVGCDLQTPHPERPF 224

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                YL + +E +  F+  P A+  TVEIA RCS +             +  D   +   
Sbjct: 225  NRLGYLHDEAEAMRRFAQDPRAMARTVEIAERCSPVFPA----EGPLFPEYRDASGRGGV 280

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L      G            G  + + R RL+ EL +I  + ++ YFL+V D +++A+
Sbjct: 281  EFLEQLVWRGARE-------RYGKVSPELRIRLEHELAIIRDLGYADYFLVVWDIVRYAR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I    GRGS A SV AY L +TD+D L  +LLFERFL+ +R   PD DIDF  DRRD
Sbjct: 334  SRGIRCA-GRGSAADSVVAYCLYLTDVDALNRNLLFERFLSRERAERPDIDIDFASDRRD 392

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV  +YG +RVA++ T+ + +A++A+R+VGR   +P   +D+L K IP        
Sbjct: 393  EVIDYVYRRYGRDRVARVATYQTFRARSAVREVGRVFGIPEELLDQLAKRIPWSTHADEI 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+      R+ +    +   +L +S+++ G  RH  TH  GIVI   PL ++  +   
Sbjct: 453  EEALERVPELRDFQPYRRAFQWMLAVSRQIAGFPRHFGTHTGGIVISGEPLMKVTSLQ-P 511

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
              S   +T ++ + +E  GL+K D L L+T+  ++ +L     R V      IP DD  T
Sbjct: 512  SASGWLITPYDKRLLEDVGLVKLDLLSLRTMAAVEGALRLGTARAVDY--DHIPMDDEAT 569

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            +  +    T+G+FQLES   R     +  + +ED++A V+L RPGPI   +V       +
Sbjct: 570  FASIRRGDTIGVFQLESPAQRALQVRLGAESLEDLVASVALIRPGPIQGNMVDPFLARRR 629

Query: 669  --EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEM 725
              E +  +HP ++P+L +T GV+++QEQV++IA  ++G++  EAD LRR M   + + EM
Sbjct: 630  GLEPVSYLHPKLEPILGKTYGVVLFQEQVIEIATAIAGFTPGEADELRRVMSHARSRAEM 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++  ERF+  A   G+    A  +F  +  +A YGF ++HAAA+A  +Y+TA++  H+P 
Sbjct: 690  EQIGERFVQKAVHQGVPLETAQTLFSYVRGYASYGFCEAHAAAFATTAYKTAYLIEHHPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844
             F AA +             C +AR+  ++I+P  +N    D  V   + I      I+ 
Sbjct: 750  SFFAAVLNQLPMGYYPAHVICAEARRRGVRILPVDINESEWDAGVPEPDAIRLGFRLIRS 809

Query: 845  VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY-SRMQLL 902
                 AR ++E   A  PF  L D  +RV   + +    E L+ AGA D      R +LL
Sbjct: 810  FSERVARALVEERQASGPFRCLSDAVTRVP--QADALHFERLIRAGAFDRVESRDRRELL 867

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEK-FSVENSSVRFENEQRVL 959
              L  +       EK        +F          D I L +     + + R  +E  VL
Sbjct: 868  WQLPRLL--VLRKEKALA-----LFDTISAPSPAEDAIRLPQSMPPMSLAERIADEYSVL 920

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G   SGH L +Y+  LR  G     E      G  +++A + +   +  T+ G  + + T
Sbjct: 921  GVGVSGHWLSLYREALRSEGYCTLAEVGEKREGARVKVAGLSIRPHRPPTKSGKTVVFFT 980

Query: 1020 FSEPAKEYEANFF 1032
              +     +A  F
Sbjct: 981  LEDETGIADAVMF 993


>gi|295695654|ref|YP_003588892.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
 gi|295411256|gb|ADG05748.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
          Length = 1022

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 291/1028 (28%), Positives = 483/1028 (46%), Gaps = 57/1028 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL  HS +S L+GA +   ++D  +     A+A+TD + +   + F + A   GI+PI 
Sbjct: 2    VHLHAHSYFSFLDGASAPEELVDIASQLGISAMALTDRDTVAGLVPFHRAAERVGIRPIS 61

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ ++                    + +L   A+GY  L  L+++ +L    +   R 
Sbjct: 62   GSEITMEDGTV----------------LTVLAENAKGYAELCTLLTKAHL-SHPRGEPRT 104

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR-H 189
                L +   EGLI+L+G   G I        +Q A +     +   G DR ++ +Q   
Sbjct: 105  LYQDLVK-HREGLIVLSGDRRGRIPTLLLQKQNQKAREMAEWLRDGLGKDRFFLEIQDSF 163

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
                ++   ++ +LA T ++ + AT++  + S + +  +DVL  + + T +      R  
Sbjct: 164  TPGSQHLTGRLCELADTLDIGVTATHDIHYASPDQFPIYDVLTCIRNQTGLESPHPERPL 223

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                YL +  EM   F   P+AL   +EIA RC   L +                     
Sbjct: 224  NGKAYLLSPEEMTLRFKRRPDALHRAMEIAERCQVSLDL----SLPRHPAFPHGPGDTPM 279

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     G            G    + R+RL+ EL +I  + ++ YFL+V D +Q+A+
Sbjct: 280  AILRRLTEEGAIR-------RYGSLTPEIRRRLEHELAIIETLGYADYFLVVWDVVQYAR 332

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            K  I    GRGS A S  AY L ITD+D     LLFERF++ +R   PD D+DF   RRD
Sbjct: 333  KKGIRYA-GRGSAADSAVAYCLGITDVDAAGRGLLFERFISLERGEKPDIDVDFDARRRD 391

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EV  YV N+YG + VA + T+ + Q ++A+R+VGR +  P   +DRL K IP        
Sbjct: 392  EVAAYVYNRYGEDHVAAVCTYQTFQIRSAIREVGRVMGFPPPLLDRLAKRIPYMVRAGEL 451

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              A+      R+A +    V +L  +   L  + RH  TH  G+VI   PL+ +  + R 
Sbjct: 452  GAALERFPELRDAGIEQKQVWQLFHLVSALVDIPRHIGTHLGGLVISRDPLTTVTSLQR- 510

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
                + +T F+ + +E  GL+K D L L+TL+ ++ ++  L + G  +D   IP DD +T
Sbjct: 511  SAKGVIITPFDKRAVEDVGLMKLDLLSLRTLSAVEDTVQLLHRDGKPIDPEDIPLDDPDT 570

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            +  +    T+G+FQLES   R     ++PD +ED++A V+L RPGPI   +V    +  +
Sbjct: 571  FAAIGEGRTIGVFQLESPAQRALQVRLKPDHLEDLVASVALIRPGPIKGNMVEPFLERRR 630

Query: 669  --EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-EEM 725
               +   IHP + P+L +T GVI++QEQV++I   ++G++  EAD LRR M       EM
Sbjct: 631  GNAEFHYIHPALKPILDKTYGVILFQEQVIEIVTAVAGFTPGEADRLRRVMSHHRSLREM 690

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++  E F+  +   G+S+  A  I+  +  +A YGF ++HAAA+A  +Y+TA++  HYP 
Sbjct: 691  EEIGELFLEKSMARGVSRETAEQIYNYIKGYASYGFCEAHAAAFAATAYRTAYLARHYPA 750

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             + A  +         I   C +A +  ++I+PP VN      ++    I   L  IKG+
Sbjct: 751  AYYAGLLNQFPMGYYPIHVLCSEAHRRGVEILPPDVNNSETGCRLEKGNIRLGLNLIKGL 810

Query: 846  GTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
                   I+E      PF S E+FC R+     +R +LE+L+  GA D    +R QLL  
Sbjct: 811  PREEVARIIEDRERHGPFASPEEFCLRIHP---SRTLLENLILTGAFDRLYPNRRQLLWY 867

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L+++ +               +   +                    R  +E R++    S
Sbjct: 868  LNDLLQ---------------LSGVDIHWTQILPPPGDSGDFTLKERLFHEYRLIQVGLS 912

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            GH +++++P+LR        +   +  G  +  A ++V   +  T  G  + + +  +  
Sbjct: 913  GHLMELFRPVLRTRRFLPVVDL-ESFEGKEVWTAGILVRPHRPPTPSGKTVVFFSLEDET 971

Query: 1025 KEYEANFF 1032
               +A  F
Sbjct: 972  GIVDAVMF 979


>gi|254247148|ref|ZP_04940469.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184]
 gi|124871924|gb|EAY63640.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184]
          Length = 1067

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 268/1037 (25%), Positives = 443/1037 (42%), Gaps = 62/1037 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S+++ LEGA     ++ + A      IAITD  +L   +     A      
Sbjct: 27   PAYAELFCLSNFTFLEGASHAEELVKRAAQLGYSGIAITDECSLAGVVRAHVAAKDLNFP 86

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             +IG    +   D                 ++LL    EGY  L EL++   +       
Sbjct: 87   LVIGSYFKLTQAD-----------SSPALDLILLAQNREGYGNLSELITLARMRSPKGGY 135

Query: 129  VRICLSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
                   L+ E     L  + G  +  I +  F    +  + ++    + F  R +V L 
Sbjct: 136  CLTPQDLLKPEKAYAHLRGMPGCLAILIPK--FPAKPEALDAQVEWLLETFPGRAWVGLC 193

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H R  D      V  +AY + +P+VA  +            D + A+     V  +   
Sbjct: 194  LHQRAMDNPHAGVVEHIAYGNGVPVVAVGHVTMHVRSRKPLQDTMTAIRIGKPV-AECGY 252

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + P+     RS M       P AL  TV I  RC F L       P  +          
Sbjct: 253  ELAPNAEQHLRSRMRLAHLHHPNALNETVAILSRCGFSLDELRYEYPDELVPAG----LT 308

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR +   G   R + G         + + +L+ EL +I  + +  YFL V D +++
Sbjct: 309  PTEYLRQETYIGAHRRFSNG------IPLNVQAQLEHELELITELSYEPYFLTVYDIVKF 362

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I    GRGS A S   Y L IT++DP R ++LFERF++ +R S PD D+DF   +
Sbjct: 363  ARSEGIL-CQGRGSAANSAVCYCLGITEVDPARSTMLFERFISRERNSPPDIDVDFEHQK 421

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+ V++Y+  KYG +R A      + +A+  LRDVG+A+ +    VDR+ K         
Sbjct: 422  REIVMQYIYRKYGRDRAAIAAAVSTYRARGVLRDVGKAVGVDAQIVDRVAKAHHWFDGTA 481

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L+  ++         + P +     ++ +L G  RH S H+ G VI    LS+LVP+ 
Sbjct: 482  DLLERFSES----GLDPSAPIIQTWASLAAQLCGFPRHLSQHSGGFVISRGKLSRLVPIE 537

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                 D  V Q++   +E  GL+K D L L  L++++++LD +   RG   ++  IP +D
Sbjct: 538  NAAMQDRSVIQWDKDDLESLGLLKVDVLALGMLSVIRRALDLISLHRGEPFEMQDIPSED 597

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNN 663
             ETY +++   T+G+FQ+ES   +  L  ++P    D++  V++ RPGPI    +  Y  
Sbjct: 598  PETYDMISNADTVGVFQIESRAQQSMLPRLKPRTFYDLVIEVAIVRPGPIQGGAVHPYLK 657

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IK 722
            R+ G + +      ++  L  T GV I+QEQVMQ+A L +G+S  EAD LRRAM     K
Sbjct: 658  RRQGIDPVSYPSKDLETALARTLGVPIFQEQVMQVAILAAGFSPGEADGLRRAMAAWKRK 717

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              ++   +R +SG    G  +  A  IF  +  FADYGF +SHAA++A++ Y ++W+K H
Sbjct: 718  GGLEPYHDRLVSGMLMRGYEREFAEAIFAQIKGFADYGFPESHAASFALLVYVSSWLKCH 777

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR------IY 836
             P  FL + +  +        +  QDA++  + ++P  V     +  +          + 
Sbjct: 778  EPEAFLVSLLNSQPMGFYSPSQLIQDAKRHGVTVLPADVAISNWESSLEYPEAGCRPVVR 837

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L+ + G+    A  I  A A +PF S  D   R    +L+R  L  L  + AL     
Sbjct: 838  LGLSLLHGMRAEAADRIEMARAVEPFSSTIDLARRA---QLDRHDLHVLARSDALASLAG 894

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R   L   +++                ++ A                  +     +++ 
Sbjct: 895  GRRSALW--ESVVAAPDK----------DLLASANVVDET----PDLGWASEGEEIQSDY 938

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            + +G     HPL + +P+L    +           G   R   +V  +Q+  T KG  + 
Sbjct: 939  QSMGLTLRRHPLALLRPMLHAKKLMPAATLNTYPNGRLARACGLVTVRQRPGTAKG--VI 996

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +VT  +         +P
Sbjct: 997  FVTLEDETGNVNVIIWP 1013


>gi|258511002|ref|YP_003184436.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
            subsp. acidocaldarius DSM 446]
 gi|257477728|gb|ACV58047.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
            subsp. acidocaldarius DSM 446]
          Length = 1039

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 308/1033 (29%), Positives = 497/1033 (48%), Gaps = 52/1033 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL  HS YS L+GA S+  ++ + AA   PA+A+TD N +    EF + A A G++PI
Sbjct: 2    FVHLHCHSPYSFLDGASSIEALVAQAAAQGMPALALTDRNTIAGQPEFHRLAAAYGVKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L ++                    +V+L   A G++ L EL++RM++  + +   R
Sbjct: 62   AGAELTMEDGS----------------QLVVLAEHATGFRHLCELLTRMHVDARDRADPR 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +  + L E  +EGL++L+GG  G + RA    +   A + +  ++ +FGDR Y+      
Sbjct: 106  LREADLFER-SEGLLILSGGLRGFVQRALARRAYGDARRFVERYRNVFGDRFYLEWTADG 164

Query: 191  GYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
                  R   ++ LA    +P VA       S E+   HDVL  +     +      R  
Sbjct: 165  LPGCARRMRDLLDLAEATGVPAVAATEVRAASPEEVAVHDVLTCIRVGCDLQTPHPERPF 224

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                YL + +E +  F+  P A+  TVEIA RCS +             +  D   +   
Sbjct: 225  NRLGYLHDEAEAMRRFAQDPRAMARTVEIAERCSPVFPA----EGPLFPEYRDASGRGGV 280

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L      G            G  + + + RL+ E  +I  + ++ YFL+V D +++A+
Sbjct: 281  ELLEQLVWQGARK-------RYGKVSPELQMRLEHEFAIIRDLGYADYFLVVWDIVRYAR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I    GRGS A SV AY L +TD+D L  +LLFERFL+ +R   PD DIDF  DRRD
Sbjct: 334  SRGIRCA-GRGSAADSVVAYCLYLTDVDALNRNLLFERFLSRERAERPDIDIDFASDRRD 392

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV  +YG +RVA++ T+ + +A++A+R+VGR   +P   +D+L K IP        
Sbjct: 393  EVIDYVYRRYGRDRVARVATYQTFRARSAVREVGRVFGIPEELLDQLAKRIPWSTHADEI 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A+      R+ +    +   +L +S+++ G  R+  TH  GIVI   PL ++  +   
Sbjct: 453  EEALERVPELRDFQPYRRAFQWMLAVSRQIAGFPRYFGTHTGGIVISGEPLMKVTSLQ-P 511

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
              S   +T ++ + +E  GL+K D L L+T+  ++ +L     R V      IP DD  T
Sbjct: 512  SASGWLITPYDKRLLEDVGLVKLDLLSLRTMAAVEGALRLGTARAVDY--DHIPMDDEAT 569

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            +  +    T+G+FQLES   R     +  + +ED++A V+L RPGPI   +V       +
Sbjct: 570  FASIRRGDTIGVFQLESPAQRALQVRLGAESLEDLVASVALIRPGPIQGNMVDPFLARRR 629

Query: 669  --EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEM 725
              E +  +HP ++P+L +T GV+++QEQV++IA  ++G++  EAD LRR M   + + EM
Sbjct: 630  GLEPVSYLHPKLEPILGKTYGVVLFQEQVIEIATAIAGFTPGEADELRRVMSHARSRAEM 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            ++  ERF+  A + G+    A  +F  +  +A YGF ++HAAA+A  +Y+TA++  H+P 
Sbjct: 690  EQIGERFVQKAVRQGVPLETAKTLFSYVRGYASYGFCEAHAAAFATTAYKTAYLIEHHPA 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844
             F AA +             C +AR+  ++I+P  +N    D  V   + I      I+ 
Sbjct: 750  SFFAAVLNQLPMGYYPAHVICAEARRRGVRILPVDINESEWDAGVPEPDAIRLGFRLIRS 809

Query: 845  VGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY-SRMQLL 902
                 AR ++E       F SL D   R+   + +    E L+ AGA D      R +LL
Sbjct: 810  FSERVARALVEERQAFGSFRSLADAVMRLP--QADALHFERLIRAGAFDRVESRDRRELL 867

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEK-FSVENSSVRFENEQRVL 959
              L      A   EK        +F          D I L +     + + R  +E  VL
Sbjct: 868  WQLPRWL--ALRKEKALA-----LFDTISAPSPAEDAIRLPQSMPPMSLAERIADEYSVL 920

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G   SGH L +Y+  LR  G     E+     G  +++A + +   +  T+ G  + + T
Sbjct: 921  GVGVSGHWLSLYREALRNEGYCTLAEAGEKREGARVKVAGLSIRPHRPPTKSGKTVVFFT 980

Query: 1020 FSEPAKEYEANFF 1032
              +     +A  F
Sbjct: 981  LEDETGIADAVMF 993


>gi|170721609|ref|YP_001749297.1| error-prone DNA polymerase [Pseudomonas putida W619]
 gi|169759612|gb|ACA72928.1| DNA polymerase III, alpha subunit [Pseudomonas putida W619]
          Length = 1026

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 289/1036 (27%), Positives = 457/1036 (44%), Gaps = 76/1036 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P +  L   S++S   GA S   +L +       A+AITD   L   +   Q A A  
Sbjct: 2    SAPGYAELHCLSNFSFQRGASSAEELLRRAREQGYQALAITDECTLAGIVRAWQAAKAQQ 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+ I+G ++ +                   P +VLLV    GYQ L  L++R     Q K
Sbjct: 62   IRLIVGSEVRLHNG----------------PKLVLLVQDLSGYQNLCALITRARRRAQ-K 104

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             S ++    L+E+   GL+ L              +S  +A       + +FG+RL++ +
Sbjct: 105  GSYQLFPDDLRELHR-GLLALW----------LAEDSRDLA--TGQWLQGVFGERLWLGV 151

Query: 187  QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              HRG  D  R +++  LA    +  VA  +            D + A+     V++  R
Sbjct: 152  HLHRGSDDETRLARLRGLAGQLGIRAVACGDVHMHVRGRRALQDCMTAIRQHCSVAEAGR 211

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 +     R+          + L  T+ IA RC F L       PR +  E     +
Sbjct: 212  FLF-ANGERHLRTLEQLAELYPADLLSETLCIAERCQFDLGELRYQYPRELVPEG----Q 266

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR     GL  R   G       +   R+ L  EL +IA + +  YFL V D + 
Sbjct: 267  TPASWLRQLCERGLAHRWPSG------PSDKVREVLAKELALIAELGYESYFLTVHDIVA 320

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I    GRGS A SV  + L IT++DP++  LLFERFL+ +R   PD D+DF  D
Sbjct: 321  FARSQHIL-CQGRGSAANSVVCFVLGITELDPMKHRLLFERFLSRERNEPPDIDVDFEHD 379

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YV  +YG  R A      +  A  A+RDV R L +P  QVD L K        
Sbjct: 380  RREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARVLGLPADQVDALAKCCGRWSDR 439

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                Q +A+           PS+ R+L ++ +L G  RH S H  G VI ++PL  LVP+
Sbjct: 440  IPDEQRLAE----AGFEPGSPSLRRILVLAAQLIGFPRHLSQHPGGFVISEQPLDHLVPV 495

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFD 604
                 ++  V Q++   ++  GL+K D L L  L+ L++  D + Q   +   L+ IP +
Sbjct: 496  ENAAMAERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDLMQQHRGRHLTLATIPAE 555

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662
            D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+   
Sbjct: 556  DPATYAMISRAETMGVFQIESRAQMAMLPRLKPSTFYDLVIEVAIVRPGPIQGDMVHPYL 615

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R+  +E +      +  + + T GV ++QEQVM++A + + YS  EAD LRR+M    +
Sbjct: 616  RRRLKQEPVTYPSLKLKEVFERTLGVPLFQEQVMELAMVAADYSPGEADQLRRSMAAWKR 675

Query: 723  EEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
                +  +ER + G  +NG     A  IFE +  F  YGF +SHAA++A++ Y ++W+K 
Sbjct: 676  HGGLEPHRERLVQGMLRNGYDLAFAERIFEQIKGFGSYGFPESHAASFALLCYASSWLKC 735

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----NRIY 836
            H P  F  A +           +  Q+AR+  I++ P  V     D  +         I 
Sbjct: 736  HEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVGHSQWDCTLEPVAEGALAIR 795

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  I+G     AR +  A A +P+  +ED C R     L+ R    L  AGAL     
Sbjct: 796  LGLRQIRGFAEADARRLEAARARRPWRDVEDLCLRA---GLDSRARARLADAGALRALAR 852

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R Q    +  +                 +FA  + T    + L              + 
Sbjct: 853  DRHQARWQVAAV------------QPQLPLFAELQATPEAAVALP---APTVGEDLVADY 897

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              LG     HPL + +  LR +G +  +E      G+ + +A +VV +Q+ +T  G  + 
Sbjct: 898  ATLGTTLGPHPLTLLRSRLRVLGCRSSQELAGVEHGDAVAVAGLVVGRQRPQTASG--VT 955

Query: 1017 WVTFSEPAKEYEANFF 1032
            +VT  +         +
Sbjct: 956  FVTLEDEFGMVNVVVW 971


>gi|295697007|ref|YP_003590245.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
 gi|295412609|gb|ADG07101.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
          Length = 991

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 366/958 (38%), Positives = 560/958 (58%), Gaps = 46/958 (4%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           HL VHS+YSLL G      ++ +  AD  P +AITD  NL++A+ F + A  AGI+PI+G
Sbjct: 2   HLHVHSAYSLLRGVCRPEALIQRAVADGMPGVAITDWANLYAAIRFVRLAKEAGIRPILG 61

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            Q+ +  +   + +          P++VLL  + +G++ LI LVS  +          + 
Sbjct: 62  AQIPLVEESVQRPSRGDP------PAVVLLAESEKGFRGLIRLVSLAH------DGPELG 109

Query: 133 LSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR 190
           +SW        GL +L+GG+ GP+D A     ++ A   L  F ++FG +R ++ +Q   
Sbjct: 110 VSWEAVTAHAPGLFLLSGGAEGPVDAALARGDTERARDWLRRFVEVFGPNRAWLEVQD-D 168

Query: 191 GYDRYRES--QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
           G +R R S  ++V L   + L  VAT +  ++  ED     V+ A+           P  
Sbjct: 169 GSERGRLSHYRLVSLGEEYGLLPVATADVHYIDPEDAPLARVVQALRQG---DDGAPPPS 225

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
               +  + +EM + F+ LP+A+   +EIA RC   L +   +LP F   E +      +
Sbjct: 226 PSPRWFASSAEMRARFAHLPQAVNAALEIAERCRVELPLGRVLLPSFDVPEGE----SPD 281

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             LR     GL  R+             Y+ RL+ EL+VIARM F+ YFLIV DFI++++
Sbjct: 282 GYLRRLCQEGLRQRVGDPV------PPSYKDRLEHELSVIARMGFASYFLIVWDFIRYSR 335

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
           +N I  GPGRGS AGS+ AYAL IT +DP+R  LLFERFLNP+R+SMPD DIDF  +RR 
Sbjct: 336 ENGIATGPGRGSAAGSLVAYALGITGVDPVRHHLLFERFLNPERVSMPDIDIDFEDERRF 395

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
           EVI YV  KYGH+RVAQIITFG++ A+AA+RD GR   +P + VDR+ KL+P      + 
Sbjct: 396 EVIEYVAQKYGHDRVAQIITFGTMAARAAIRDAGRVTGLPPALVDRVAKLVPASLGITLD 455

Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              + ++ R R     +  V  LL +++ LEGL RH STHAAG+VI    L+ +VP+ R 
Sbjct: 456 QA-LVEEPRLRALMDENEQVRTLLTVAKGLEGLPRHTSTHAAGVVIAPSALTDVVPVQRT 514

Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
                 +TQ++M  +E  GL+K DFLGL+TL++++ +     +R          + D +T
Sbjct: 515 PEGG-LITQYDMASLEAVGLLKMDFLGLRTLSIIEHTRQLAGERLGHAVEIDEEYTDPKT 573

Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
           Y LL    T G FQLESSG++  L  +QP+C EDI+A++SLYRPGP++NI  Y + K+G+
Sbjct: 574 YELLGRGDTDGCFQLESSGVKHVLRDLQPNCFEDIVAVISLYRPGPMENISRYIDAKHGR 633

Query: 669 EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             +   HP ++P+L++T G+++YQEQ+MQIA  ++G++L +ADVLRRA+GKK +E +++Q
Sbjct: 634 VPVHYPHPDLEPILRDTYGIVVYQEQIMQIASRMAGFTLGQADVLRRAVGKKKREVLEQQ 693

Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
           +  F++G  + G  + +A  +++L+ +FADYGFN+SHA AYAV+S++TA++K HYP EF 
Sbjct: 694 RAAFVAGCLRQGHPRDLAEELYDLIVRFADYGFNRSHAVAYAVLSWRTAYLKAHYPAEFF 753

Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGT 847
           A+ ++  M + +K+ ++ ++A Q  I+++PPSV T    F V  D +I ++L AIK VG 
Sbjct: 754 ASLLSAAMASADKVAQYVEEAFQRGIEVLPPSVQTSGAGFTVSEDGKIRFALGAIKHVGQ 813

Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              + ++ A     F SL DF SRVD +  +RR +E+L+ AGA D  G +R +LL  L+ 
Sbjct: 814 AAVQAVLGARRAGTFRSLGDFLSRVDHRACHRRTVEALIRAGAFDELGENRDELLGRLE- 872

Query: 908 IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
             + + W            F  E           + S EN   +  +E+ ++G  F+G
Sbjct: 873 --RESHW---GGGGAQLTFFGEESPG-------RRASSENEQEKIRHEKELMGLTFTG 918


>gi|221215348|ref|ZP_03588313.1| error-prone DNA polymerase [Burkholderia multivorans CGD1]
 gi|221164780|gb|EED97261.1| error-prone DNA polymerase [Burkholderia multivorans CGD1]
          Length = 1049

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 292/1037 (28%), Positives = 470/1037 (45%), Gaps = 63/1037 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A AAG+ 
Sbjct: 10   PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAAGLP 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG    +   D                    L    +GY  L ELVS   +  + K S
Sbjct: 70   LIIGSHFRLTAADGSPAIAFS-----------ALAMNRDGYGNLCELVSLGRMRGK-KGS 117

Query: 129  VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L++       L  L    +  I    F  + Q  + ++  F ++FGDR +V L
Sbjct: 118  YRLAPRDLEQPDAPFTHLRGLPDCIA--ILSPDFPANEQRLDAQVEWFARVFGDRAWVAL 175

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              H R  D      V ++A  H +P+VAT+  L          DVL ++     V  +  
Sbjct: 176  TLHARAMDDIHRGVVERVAARHGVPVVATSWPLMHVRSRKPLQDVLTSIRLGRPV-SECG 234

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     RS +         ALE TV +ARRC+F L       P  +     D+  
Sbjct: 235  YELAPNAERHLRSRLRLANLYPAGALEETVRVARRCTFSLDDLKYEYPDEVVPAGYDV-- 292

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 LR +   G + R   G         D + +++ EL +IA + +  YFL V D +Q
Sbjct: 293  --ATYLREQTYIGAQRRFPAG------IPVDVQAQIEHELQLIAELNYEAYFLTVYDIVQ 344

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A++N I    GRGS A S   Y L +T++DP R S+LFERF++ +R   PD D+DF   
Sbjct: 345  FARQNGIL-CQGRGSAANSAVCYCLGVTEVDPSRQSMLFERFMSKERNEPPDIDVDFEHQ 403

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV++Y+  KYG +R A      + + ++ALR+ G+AL +  + VDR+ K      + 
Sbjct: 404  RREEVMQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDPAIVDRVAKSHHWFDSR 463

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               LQ  A+           P   +    + +L G  RH S H+ G VI    L++LVP+
Sbjct: 464  ADLLQRFAE----AGLDPEAPLNQQWAAFAAQLLGYPRHLSQHSGGFVISRGKLTRLVPV 519

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604
                  D  + Q++   IE  G++K D L L  L++++++LD +  +RG   +L  IP +
Sbjct: 520  ENAAMEDRTIIQWDKDDIEALGILKIDVLALGMLSMVRRALDMISEKRGETFELQDIPSE 579

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662
            D  TY +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGP+   +V+   
Sbjct: 580  DKATYDMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIVRPGPVQGGMVHPYL 639

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721
             R+ G E +      ++  LK T GV I+QEQVMQ+A L +G+S  EAD LRRAM     
Sbjct: 640  RRRQGLEPVTFPSDGMEKALKRTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKR 699

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K  ++   +R +SG  + G  +  A  IF  +  F +YGF +SHAA++A++ Y +AW++ 
Sbjct: 700  KGGLEPYHDRLVSGMLERGYDREFAEAIFAQIKGFGEYGFPESHAASFALLVYSSAWLRR 759

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYY 837
            H P  FLAA +  +        +  QDAR+  ++++P  VN    D  +        +  
Sbjct: 760  HEPAVFLAALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWDSVIEGPTTSAPVRL 819

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GY 896
              + ++G+    A  I  A A +PF  + D   R    +L+R  L+ L  A AL    G 
Sbjct: 820  GFSLLRGMRADVAGRIELARAVRPFVDVADLARRA---QLDRHDLQVLARANALRSLAGG 876

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R             A            ++    +   +    +      +       + 
Sbjct: 877  NRR------------AALWLAAAAIPDRDLLRGTERDDA----VPALPQASEGKEIVTDY 920

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            R +GF    HPL + +  L    ++  E+      G   R   +V  +Q+  T  G  + 
Sbjct: 921  RAMGFTLGRHPLALLRDRLTLDRLQSAEQLATLRSGQLARACGLVTVRQRPGTANG--VL 978

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++T  +   +     +P
Sbjct: 979  FMTLEDETGQVNVILWP 995


>gi|120402538|ref|YP_952367.1| error-prone DNA polymerase [Mycobacterium vanbaalenii PYR-1]
 gi|119955356|gb|ABM12361.1| error-prone DNA polymerase, DnaE-like protein [Mycobacterium
            vanbaalenii PYR-1]
          Length = 1098

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 280/1037 (27%), Positives = 481/1037 (46%), Gaps = 60/1037 (5%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E S  +  L  HS+YS L+GA +   ++++ A     AIA+TD + L+  + F++ A   
Sbjct: 58   ESSTPYAELHAHSAYSFLDGASTPEELVEEAARLNLRAIALTDHDGLYGVVRFAEAAREL 117

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
             +  + G +L +       +      P P  P +++L    EGY+RL   ++  +L    
Sbjct: 118  DVATVFGAELSLGGGTRTDV------PDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGE 171

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184
            K  +R     L E       +LTG   G + +A      + AE  L      FG DR+ V
Sbjct: 172  KGVLRYDFDALTEAAGGHWQILTGCRKGHVRQALSTGGPEAAEAALADLVDRFGPDRVTV 231

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVVSQ 242
             L  H    D  R + +  LA    L +VAT  + F           + A+   +++   
Sbjct: 232  ELTHHGHPLDDERNAALAALAPRFGLGVVATTAAHFAEPARGRLAMAMGAIRARNSIDEA 291

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                      +L++  EM  +F+  PE +    E+  +C+F L + AP LP F   +   
Sbjct: 292  AGYLAPLGGSHLRSGDEMARMFAHCPEVVTAAAELGEQCAFGLALIAPQLPPFDVPDG-- 349

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                E + LR+  + G   R      A   +AQ     ++ EL VI ++ F GYFL+V D
Sbjct: 350  --HTESSWLRHLVMQGARERYGPPERASRAYAQ-----IEHELAVIEQLNFPGYFLVVHD 402

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
              ++ + NNI    GRGS A S   YAL +T++DP+   LLFERFL+P R   PD DID 
Sbjct: 403  ITRFCRDNNILS-QGRGSAANSAVCYALKVTNVDPIANDLLFERFLSPARDGPPDIDIDI 461

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              D R+  I+YV  +YG E  AQ+    + + ++A+RD+ RAL     Q D   K +   
Sbjct: 462  ESDLRENAIQYVYQRYGREYAAQVANVITYRGRSAVRDMARALGFSQGQQDAWSKQVSQW 521

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                             +A   +     ++++++++  L RH   H+ G+VI DRP++ +
Sbjct: 522  GN-------------LADATHVEDIPGPVVDLAKQISNLPRHMGIHSGGMVICDRPIADV 568

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLI 601
             P+      +  V Q++       GL+KFD LGL  L+ L  ++D +A+   ++VDL+ +
Sbjct: 569  CPVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGIEVDLAKL 628

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIV 659
               +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++ 
Sbjct: 629  DLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRMFYDLVVEVALIRPGPIQGGSVH 688

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-G 718
             Y  R+NG+E +   HP ++  L++T GV ++QEQ+MQ+A   +G++ +EAD LRRAM  
Sbjct: 689  PYIKRRNGQEAVTYDHPSMESALRKTLGVPLFQEQLMQLAVDCAGFTPAEADQLRRAMGS 748

Query: 719  KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            K+  E+M + + RF  G ++ +G++  +A  I+E L  FA++GF +SH+ ++A + + ++
Sbjct: 749  KRSTEKMRRLRGRFFDGMAELHGVTGDVAQRIYEKLEAFANFGFPESHSLSFASLVFYSS 808

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--RI 835
            W K H+P  F AA +  +       +    DAR+  + +  P VN       + ++   +
Sbjct: 809  WFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVVVHGPDVNAGLAHATLENHGLDV 868

Query: 836  YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
               L  ++ +G   A  ++       PF SL D   RV   +L+    E+L  AGAL CF
Sbjct: 869  RLGLGGVRHIGDELAERLVGERKAHGPFTSLTDLTRRV---QLSVPQTEALATAGALGCF 925

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            G +R + L +       A     +R     +              +              
Sbjct: 926  GITRREGLWAAG----AAATERPDRLPGVGS-----------SSHVPSLPGMTELELTVA 970

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +    G     +P +  +  L  MG+   ++ ++   G  + +A  V  +Q+  T +G  
Sbjct: 971  DVWATGVSPDRYPTEFLREDLDAMGVVPADQLLSLPDGTRVLVAGAVTHRQRPATAQG-- 1028

Query: 1015 IGWVTFSEPAKEYEANF 1031
            + ++   +         
Sbjct: 1029 VTFMNLEDETGMVNVLC 1045


>gi|161506601|ref|YP_001573722.1| DNA polymerase III, alpha subunit [Burkholderia multivorans ATCC
            17616]
 gi|189348876|ref|YP_001942071.1| DNA polymerase [Burkholderia multivorans ATCC 17616]
 gi|160346839|gb|ABX19922.1| DNA polymerase III, alpha subunit [Burkholderia multivorans ATCC
            17616]
 gi|189339014|dbj|BAG48081.1| DNA polymerase [Burkholderia multivorans ATCC 17616]
          Length = 1049

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 291/1037 (28%), Positives = 470/1037 (45%), Gaps = 63/1037 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A AAG+ 
Sbjct: 10   PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAAGLP 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG    +   D                    L    +GY  L ELVS   +  + K S
Sbjct: 70   LIIGSHFRLTAADGAPAIAFS-----------ALAMNRDGYGNLCELVSLGRMRGK-KGS 117

Query: 129  VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L++       L  L    +  I    F  + Q  + ++  F ++FGDR +V L
Sbjct: 118  YRLAPRDLEQPDAPFTHLRGLPDCIA--ILSPDFPANEQRLDAQVEWFARVFGDRAWVAL 175

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              H R  D      V ++A  H +P+VAT+  L          DVL ++     V  +  
Sbjct: 176  TLHARAMDDIHRGVVERVAARHGVPVVATSWPLMHVRSRKPLQDVLTSIRLGRPV-SECG 234

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     RS +         ALE TV +ARRC+F L       P  +     D+  
Sbjct: 235  YELAPNAERHLRSRLRLANLYPAGALEETVRVARRCTFSLDDLKYEYPDEVVPAGYDV-- 292

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 LR +   G + R   G         D + +++ EL +IA + +  YFL V D +Q
Sbjct: 293  --ATYLREQTYIGAQRRFPAG------IPVDVQAQIEHELQLIAELNYEAYFLTVYDIVQ 344

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A++N I    GRGS A S   Y L +T++DP R S+LFERF++ +R   PD D+DF   
Sbjct: 345  FARQNGIL-CQGRGSAANSAVCYCLGMTEVDPSRQSMLFERFMSKERNEPPDIDVDFEHQ 403

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV++Y+  KYG +R A      + + ++ALR+ G+AL +  + VDR+ K      + 
Sbjct: 404  RREEVMQYIYRKYGRDRAALTAAVSTYRPRSALREAGKALGVDPAIVDRVAKSHHWFDSR 463

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               LQ  A+           P   +    + +L G  RH S H+ G VI    L++LVP+
Sbjct: 464  ADLLQRFAE----AGLDPEAPLNQQWAAFAAQLLGYPRHLSQHSGGFVISRGKLTRLVPV 519

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604
                  D  + Q++   IE  G++K D L L  L++++++LD +  +RG   +L  IP +
Sbjct: 520  ENAAMEDRTIIQWDKDDIEALGILKIDVLALGMLSMVRRALDMISEKRGETFELQDIPAE 579

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662
            D  TY +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGP+   +V+   
Sbjct: 580  DKATYDMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIVRPGPVQGGMVHPYL 639

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721
             R+ G E +      ++  LK T GV I+QEQVMQ+A L +G+S  EAD LRRAM     
Sbjct: 640  RRRQGLEPVTFPSDGMEKALKRTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKR 699

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K  ++   +R +SG  + G  +  A  IF  +  F +YGF +SHAA++A++ Y +AW++ 
Sbjct: 700  KGGLEPYHDRLVSGMLERGYDREFAEAIFAQIKGFGEYGFPESHAASFALLVYSSAWLRR 759

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYY 837
            H P  FLA+ +  +        +  QDAR+  ++++P  VN    D  +        +  
Sbjct: 760  HEPAVFLASLLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWDSVIEGPTTSAPVRL 819

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GY 896
              + ++G+    A  I  A A +PF  + D   R    +L+R  L+ L  A AL    G 
Sbjct: 820  GFSLLRGMRADVAGRIELARAVRPFVDVADLARRA---QLDRHDLQVLARANALRSLAGG 876

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R             A            ++    +   +    +      +       + 
Sbjct: 877  NRR------------AALWLAAAAIPDRDLLRGTERDDA----VPALPQASEGKEIVTDY 920

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            R +GF    HPL + +  L    ++  E+      G   R   +V  +Q+  T  G  + 
Sbjct: 921  RAMGFTLGRHPLALLRDRLTLDRLQSAEQLATLRSGQLARACGLVTVRQRPGTANG--VL 978

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++T  +   +     +P
Sbjct: 979  FMTLEDETGQVNVILWP 995


>gi|307128611|ref|YP_003880641.1| DNA polymerase III subunit alpha [Candidatus Sulcia muelleri CARI]
 gi|306483073|gb|ADM89943.1| DNA polymerase III, alpha subunit [Candidatus Sulcia muelleri CARI]
          Length = 1379

 Score =  615 bits (1586), Expect = e-173,   Method: Composition-based stats.
 Identities = 325/1067 (30%), Positives = 543/1067 (50%), Gaps = 59/1067 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-- 64
             +  F H+  H+S+S+L   + +N+++ K       A+ ITD  N+     F +K     
Sbjct: 207  NTKYFSHIHNHTSFSILSSTIDINSLIKKTIEYNMDAVGITDYGNMMGVFNFIKKIKNLN 266

Query: 65   ---AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
                 I+PIIGC+L I    N  +    K     +   V       GY  L +L S  ++
Sbjct: 267  DNNNKIKPIIGCELFISY--NYLIKKFTKQNPDKIYHQVFFAKNKNGYNNLSKLCSHGFI 324

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                    RI  + +++   E LI ++G  +  I           AEK    +  LFGD 
Sbjct: 325  DGYYSGIPRIGKNLIEKY-KENLIAISGDLNSEIPFTILNKGENEAEKVFKWWHNLFGDD 383

Query: 182  LYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             Y+ + RH   +    ++ +++ +  + +  +A NN+ +LS++DY AHD+L+ V +S   
Sbjct: 384  FYIEILRHGLEEEDHVNKILLKFSKKYNVKFIAQNNNFYLSQKDYNAHDILLCVKNSQKQ 443

Query: 241  SQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            S                + Y KN+ +M ++FSDLPEA +N  E+  +  F    +  +LP
Sbjct: 444  STPIGKGKGFRFGFPNKEFYFKNKFQMYNLFSDLPEAFDNLKELIEKVEFYDISNQILLP 503

Query: 294  RFIEKECDDIQKEEE----NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
            +F        +   +      LR     G + +               +++++FEL  I 
Sbjct: 504  KFNIPNKWIKKNCNKNNENEYLRFLTYKGAKKKYID-------LNDRIKKKIEFELETIK 556

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            ++ + GYFLIV D I  AK   I VGPGRGS AGSV AY L IT+IDP++++LLFERFLN
Sbjct: 557  KIGYPGYFLIVQDLIFKAKNIGIEVGPGRGSVAGSVVAYCLGITNIDPIKYNLLFERFLN 616

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            PDR+S+PD DIDF    R+++I +V NKYG  +VAQIIT+G + AK+++RD  R L +  
Sbjct: 617  PDRVSLPDIDIDFDDKGREKIIEWVVNKYGKNKVAQIITYGKMGAKSSIRDTARVLNLTL 676

Query: 470  SQVDRLCKLIPN------DPAHPVSLQAIADDSRFREARLADPSVDR-------LLEISQ 516
             + +++ K++PN            SL+ I ++              +       +L+ + 
Sbjct: 677  LETNKIAKIVPNLSLKEIIKKKIKSLKEILNNEELENVIKLKKIFKKKNTLQSKILKQAM 736

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             +EG  R+   HA GI+I    +   +P+     S+  +TQF+   +EK GL+K DFLGL
Sbjct: 737  VIEGSVRNTGIHACGIIITPSDIKDYIPVSTTKDSNFLLTQFDNDVVEKVGLLKMDFLGL 796

Query: 577  KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            KTLT+++++L  ++     + L  IP DD +TY L     T+ +FQ ES GM++ L  ++
Sbjct: 797  KTLTIIKETLYLISN----LKLENIPLDDVKTYELFKKGETVAVFQYESPGMQKYLIQLK 852

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            PD   D+IA+ +LYRPGP+  I  +  RK+G EKI    P +   L+ET G+ +YQEQVM
Sbjct: 853  PDKFYDLIAMNALYRPGPMQYIPNFIARKHGLEKISYDLPELKEFLEETYGITVYQEQVM 912

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
             I+Q +SG+S  +AD LR+A+GKK K+ + K K +FI G  KNG S  I   I++    F
Sbjct: 913  LISQKISGFSKGDADFLRKAIGKKDKKILFKIKNKFIYGGLKNGFSIKILEKIWKDWKAF 972

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A Y FNKSH+  Y+ I++QTA++KTHYP E++A+ ++  M  ++ +  F ++ ++  + +
Sbjct: 973  ASYAFNKSHSTCYSYIAFQTAYLKTHYPAEYMASVLSNNMQKIKNVTFFIEECKRIGVIV 1032

Query: 817  MPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            + P +N     F V     I + L AIKG+G ++ + I++   ++ ++S+ +    VD +
Sbjct: 1033 LGPDINESNYKFTVNKMGYIRFGLGAIKGIGESSVKSILKERKNR-YNSILELIKNVDLR 1091

Query: 876  KLNRRVLESLVFAGALDCF-GYSRMQLL------QSLDNIQKYAQWVEKNRTNKHENIFA 928
             +N++VLE+LV +GA D      R Q          ++ + K+    +K + N    +F 
Sbjct: 1092 LVNKKVLENLVLSGAFDNLNNIHRYQYFYEENGSNMIEKMIKFGVKYKKLKKNVKNTLFR 1151

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
            + K     +   +     N+  +   E+ V+G Y + HPL+ Y   ++       ++   
Sbjct: 1152 NVKDIEILEPKFKICKEWNNFYKLNKEKEVIGMYMTSHPLNEYNYEIKNFTNASLDDLNK 1211

Query: 989  TIR---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             I    G  + +  ++   + + +    +       +     E   F
Sbjct: 1212 NIEKNIGKILNICGIIS--KSRIS-NNKKYIIFLLEDYKSNKEFKLF 1255


>gi|161833722|ref|YP_001597918.1| putative DNA polymerase III subunit alpha (dnaE)/DNA polymerase III,
            epsilon subunit (dnaQ) fusion [Candidatus Sulcia muelleri
            GWSS]
 gi|152206212|gb|ABS30522.1| putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase III,
            epsilon subunit (dnaQ) fusion [Candidatus Sulcia muelleri
            GWSS]
          Length = 1411

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 317/1060 (29%), Positives = 530/1060 (50%), Gaps = 69/1060 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------- 63
            + H+  H+S+S+L   + +N+++ K       A+ ITD  N+     F  +         
Sbjct: 236  YSHIHNHTSFSILSSTIDINSLIKKTIEYDMDAVGITDYGNMMGVFNFINRIKNINDNFL 295

Query: 64   -AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                I+PIIGC+L I   D +K T         + + V       GY  L +L S  ++ 
Sbjct: 296  VKKKIKPIIGCELYISYNDLIKKT-------DKIYNQVFFAKNKNGYYNLSKLCSHGFID 348

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                    I  + +++     LI ++G  +  I           AEK    +  LFGD  
Sbjct: 349  GYYSGIPIIGKNLVEKYKA-NLIAVSGDLNSEIPFTILNKGENEAEKVFKWWHNLFGDDF 407

Query: 183  YVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ + RH   +    +Q +++ +    +  +  NN+ +LS++DY AHD+L+ V +S   S
Sbjct: 408  YIEILRHGLKEEDHVNQILLKFSKKFNVKFIPQNNNFYLSQKDYHAHDILLCVKNSQKQS 467

Query: 242  QK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI-----LQVHA 289
                            + Y KN+++M ++FSDLPEA +N  E+  +  F      + +  
Sbjct: 468  TPIGKGRGFRFGFPNQEFYFKNKNQMYNLFSDLPEAFDNLKELIEKVEFYDITNKILLPK 527

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              +P    K+       E   LR     G +           Y     ++++ FEL  I 
Sbjct: 528  FYIPNKWIKKYCIKNNYENEYLRYLTYKGAKK-------KYLYINDIIKKKISFELETIK 580

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            ++ + GYFLIV DFI  AK   + VGPGRGS AGSV AY L IT+IDP++++LLFERFLN
Sbjct: 581  KIGYPGYFLIVQDFICQAKNIGVEVGPGRGSVAGSVVAYCLGITNIDPIKYNLLFERFLN 640

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
            PDR+S+PD DIDF    R+++I +V NKYG  +VAQIIT+G + AK+++RD  R L +P 
Sbjct: 641  PDRISLPDIDIDFDDKGREKIIEWVVNKYGKNKVAQIITYGKMGAKSSIRDTARVLNLPL 700

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIA------DDSRFREARLADPSVDR-------LLEISQ 516
             + D + K++PN     +  + I       +                       +L+ + 
Sbjct: 701  LETDNIAKIVPNISLKEIIKKNIKYLKKKLNSEELENVIKLKKIFKEKKTLQSKILKQAM 760

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             +EG  R+   HA GI+I    + + +P+     S+L +TQF+   +E+ GL+K DFLGL
Sbjct: 761  VIEGSVRNTGIHACGIIITPSDIKKYIPVSTTKYSNLLLTQFDNDVVEQVGLLKMDFLGL 820

Query: 577  KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            KTLT+++ +L  +      + L  +   D +TY L     T+ +FQ ES GM++ L  ++
Sbjct: 821  KTLTIIKDTLYLIK-----IPLYEVNLYDVKTYKLFKKGETVAVFQYESPGMQKYLRRLK 875

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            PD  +D+IA+ +LYRPGP+  I  +  RK+G EKI    P +   L+ET G+ +YQEQVM
Sbjct: 876  PDKFDDLIAMNALYRPGPMQYITNFIARKHGLEKISYDLPELQEFLEETYGITVYQEQVM 935

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
             I+Q +SG+S  +AD LR+A+GKK K+ +   K++FI G   NG SK I   I++    F
Sbjct: 936  LISQKISGFSKGDADFLRKAIGKKDKDVLINIKQKFIYGGINNGYSKNILEKIWKDWKSF 995

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A Y FNKSH+  Y+ I+++TA++K HYP E++A+ ++  M N++ I  F ++ ++  + +
Sbjct: 996  ASYAFNKSHSTCYSYIAFKTAYLKAHYPAEYMASVLSNNMQNLKNITFFIEECKRMGVIV 1055

Query: 817  MPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCSRVD 873
            + P +N     F V     I + + AIKG+G  +   I++     ++ ++S+      VD
Sbjct: 1056 LGPDINESNYKFTVNKMGYIRFGMGAIKGIGKYSVNSIIKERKLINR-YNSIFCLIKNVD 1114

Query: 874  SKKLNRRVLESLVFAGALDCFGY--SRMQLLQS------LDNIQKYAQWVEKNRTNKHEN 925
             + +N++VLE+LV +GA D F     R Q          ++ I K+    +  + N   +
Sbjct: 1115 LRLVNKKVLENLVLSGAFDNFKKKIHRSQYFDEENGSNMIEKIIKFGVKYKNLKINMKNS 1174

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            +F++ K     +   +     N+    + E+ V+G Y + HPL+ Y    +       ++
Sbjct: 1175 LFSNVKDIEILEPKFKNCKKWNNIDLLKKEKEVIGMYLTSHPLNEYVYETKYFTNASLDD 1234

Query: 986  SVATIR---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
                     G  I +  ++     + ++   +       +
Sbjct: 1235 INHNKEKILGKKINICGIISKSLHRISKNNKKYIIFLLED 1274


>gi|330822180|ref|YP_004351008.1| DNA polymerase III, alpha subunit [Burkholderia gladioli BSR3]
 gi|327374332|gb|AEA65685.1| DNA polymerase III, alpha subunit [Burkholderia gladioli BSR3]
          Length = 1049

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 291/1037 (28%), Positives = 463/1037 (44%), Gaps = 63/1037 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQ  S++S L GA     ++++ A     AIAITD  +L   +    +A AAG+ 
Sbjct: 10   PAYAELQCASNFSFLHGASRAEELVERAARLGYSAIAITDECSLAGVVRAHMEAKAAGLP 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG    +   D                    L    EGY  L EL++        K +
Sbjct: 70   LIIGSHFRLTAGDGSPALA-----------FTALAMNREGYGNLCELITLGRTRAA-KGT 117

Query: 129  VRICLSWLQ--EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L+  E   E L  L       I    F  + Q  + +L    ++FGDR  V L
Sbjct: 118  YRLAPMDLEHPEAPLEHLRSLPDCM--IIVTPDFPANEQRLDAQLEWAARVFGDRARVAL 175

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              H R  D      V + A  H++P+VAT+  L          DVL  +     V  +  
Sbjct: 176  TLHARAMDDIHRGAVERAAARHDVPVVATSWPLMHVRSRKPLQDVLTGIRLGRSV-GECG 234

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     RS +         ALE TV IA+RC+F L       P  +         
Sbjct: 235  YELAPNAERHLRSRLRLANLYPAGALEETVRIAQRCTFSLDELRYEYPDELVPAG----Y 290

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR +   G   R   G         + + +++ EL +IA +K+  YFL V D ++
Sbjct: 291  TPASYLREQTYIGAHGRFPNG------IPFNVQAQIEHELQLIAELKYEPYFLTVYDIVR 344

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  NI    GRGS A S   Y L +T++DP R ++LFERF++ +R   PD D+DF   
Sbjct: 345  FARSQNIL-CQGRGSAANSAVCYCLRVTEVDPARGNMLFERFISKERNEPPDIDVDFEHQ 403

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV++Y+ +KYG +R A      + + + ALR+ G+AL +    VDR+ K      + 
Sbjct: 404  RREEVMQYIYSKYGRDRAALTAAVSTYRPRGALREAGKALGVDPIIVDRVAKAHHWFDSK 463

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               L   A+        +  P   +    +  L G  RH S H+ G VI    LS++VP+
Sbjct: 464  ADLLARFAE----AGLDVEAPMNQQWAAFATALLGYPRHLSQHSGGFVISRTKLSRMVPI 519

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604
                  D  + Q++   IE  GL+K D L L  L++++++L+ +  +RG   +L  IP +
Sbjct: 520  ENAAMEDRTIIQWDKDDIEALGLLKIDVLALGMLSMVRRALEMISEKRGEAFELQDIPAE 579

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY +L    ++G+FQ+ES      L  +QP C  D++  V++ RPGP+   +V+   
Sbjct: 580  DAATYEMLCHGDSMGVFQVESRAQMSMLPRLQPRCFYDLVIEVAIVRPGPVQGGMVHPFL 639

Query: 665  KNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721
            +  +  E +    P ++  LK T GV I+QEQVMQ+A L +G+S  EAD LRRAM     
Sbjct: 640  RRRQGLEPVTFPSPDVEKALKRTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKR 699

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K  ++   ER ++G    G  +  A  IF  +  F DYGF +SHAA++A++ Y +AW++ 
Sbjct: 700  KGGLEPYHERLVNGMLARGYDRDFAEAIFAQIKGFGDYGFPESHAASFALLVYASAWLRR 759

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYY 837
            H P  FLAA +  +        +  QDAR+  ++++P  V T   D  +  +     +  
Sbjct: 760  HEPAVFLAALLNSQPMGFYTPSQLIQDARRRGVEVLPVDVTTSTWDSVLEGDTTAAPVRL 819

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-Y 896
             ++ I G+    A  I  A A +PF  + D   R     L+R  L  L  A AL      
Sbjct: 820  GMSLISGMRVEAAERIQLARAVRPFVDVADLARRA---ALDRHDLTVLAHASALRSLAKG 876

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R   + +          +     +              +   L + S  +       + 
Sbjct: 877  NRRNAIWTAAAAVPDKDILRGTERD-------------DEAPALPQASEGSE---IVTDY 920

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            R +GF    HPL++ +  LR   +    E      G   R   +V  +Q+  T KG  + 
Sbjct: 921  RAMGFTLGRHPLELLRDRLRADRLLPARELAQLRNGQFARACGIVTVRQRPGTAKG--VL 978

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++T  +   +     +P
Sbjct: 979  FITLEDETGQTNVIVWP 995


>gi|139438972|ref|ZP_01772432.1| Hypothetical protein COLAER_01438 [Collinsella aerofaciens ATCC
            25986]
 gi|133775683|gb|EBA39503.1| Hypothetical protein COLAER_01438 [Collinsella aerofaciens ATCC
            25986]
          Length = 1267

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 325/1023 (31%), Positives = 513/1023 (50%), Gaps = 66/1023 (6%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC++     + L   ++     P +  ++LL    EGY  L++ VS    +    
Sbjct: 119  IKPIFGCEVYFTPDETLARDHK-----PELYHMILLAKDQEGYVNLMQTVSEA-AVQGFY 172

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
               R+ L  L+    +G+I  +   +G I +       + A K   TF+  F     Y+ 
Sbjct: 173  YKPRVTLDNLRR-HAKGMICTSACIAGIIPKYIDRGDMEGAIKWAETFRDTFDPGDFYIE 231

Query: 186  LQRHRGY------DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            +Q H         D   +  ++ +A    + ++ATN+  +L  ED    DV+M +  +  
Sbjct: 232  IQEHGITTDNGLTDEQMDRTLIDIAKQVGVKVIATNDFHYLRREDAPVQDVIMCIGMNAK 291

Query: 240  VSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            V   +R R+T  + Y+K   EM ++F   PEA +NT+EIA +C   L   + ILPRF   
Sbjct: 292  VDDPNRMRMTGSEFYMKTEEEMRAMFPYCPEACDNTLEIADKCYVELDWDSIILPRFPL- 350

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
               D  +  E++ R +   GL          +     + ++R ++E  VI    F+ YFL
Sbjct: 351  --LDPGETHESQFRRECEKGLRQHYGDDWATREIGGVNIKERFEYEYKVICDKGFAAYFL 408

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IVA+++QWAK N I VGPGRGS AG++ AYA+ IT  DPL   L+FERFL+P R  MPD 
Sbjct: 409  IVAEYVQWAKDNGIGVGPGRGSAAGAIVAYAMNITAFDPLENGLMFERFLSPQRTEMPDI 468

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF  +RR EV+ +V+  YG E+V  +IT+ +++AK A+ D  R L  P     RL K+
Sbjct: 469  DMDFDDERRLEVVEHVRQLYGPEKVTHVITYSTIKAKQAINDAARVLDYPVYMGQRLSKM 528

Query: 479  IPNDPAHPVSLQAIAD-------DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            + +DP   +              +  F EA   D    R+++ +  +EGL R    HA  
Sbjct: 529  VSSDPKVKLKQVLDKQPGKEDLFNPDFAEAYKKDDDARRIIDTALSIEGLTRGEGVHACA 588

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            ++I   P+++ VP   D +  + +TQ+    +   GL+K DFLGL+TLT++ K+   + +
Sbjct: 589  VLICRDPVNEHVPTKLDTKGGVEITQYEGHTVADMGLLKMDFLGLRTLTVISKAKANIKK 648

Query: 592  RG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
               + +    IPFDD E + L+ +  T G+FQ+ES+GM   ++ M+P   + ++AL++LY
Sbjct: 649  NFGIDIKEEEIPFDDPEIFKLMGSGHTAGVFQVESAGMTATIKNMKPTEYKHVVALIALY 708

Query: 651  RPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+   +V  Y NR NGKE  VS    +D +L ET G ++YQEQVM I+  + G+S  
Sbjct: 709  RPGPLGAGMVSSYINRMNGKEPAVSYDDRLDDILGETYGTMVYQEQVMLISVEMCGFSKG 768

Query: 709  EADV-------------LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            E+D              L   +        +   + +++GA KN  ++ +A  I++ + +
Sbjct: 769  ESDSRIRKPVAKKKIKLLTSTVLHWEDGSDETTYDHWMNGAIKNNYTREVAQKIWDDVLE 828

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSH+A YA++  QTAW+K HYP E++AA +T      +KI  +    R   I 
Sbjct: 829  FASYAFNKSHSAGYAILVMQTAWLKAHYPHEYMAAVLTSYTGKTDKIVHYVSACRHDGIP 888

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874
            ++ P VN    +F      + + LA I+GVGT  A+ I+    A  PF +L DF  RVDS
Sbjct: 889  VLSPDVNESGTEFTATKEGVRFGLAGIRGVGTGVAQAIIAEREAGGPFKTLHDFVERVDS 948

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN-----IQKYAQWVEKNRTNKH---ENI 926
             + NRRV+ESL+ AGA D  GY R Q++  +D      I   A   +K+R +      ++
Sbjct: 949  SQANRRVIESLIKAGAFDSTGYPRRQMMHFVDKNNPENIIDAAVKRQKDRASGQTSFFDM 1008

Query: 927  FAHEKGT-FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            F   +G+ F   +        +  ++   E+ VLG Y S HPL  ++  L K     + +
Sbjct: 1009 FGDVEGSGFEVSVPDPDGQEWDRHLKLSQEKEVLGIYVSDHPLRPFEYALAKARDFSFSQ 1068

Query: 986  S---------------VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                                 G  +  A MV S  ++ T+ G  +G V   +   E    
Sbjct: 1069 IDTGYEVQNPTGGTINQEIPEGKALWWAGMVSSVSKRVTKNGDPMGIVQLEDMEGEATVV 1128

Query: 1031 FFP 1033
             FP
Sbjct: 1129 VFP 1131



 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 31/53 (58%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
          +FVHL  H+ +S+L+GA  + +++++      PA+AITD   ++   + +   
Sbjct: 2  AFVHLHNHTVFSMLDGATRIQDMVNRAVELSMPAVAITDHGYMYGVPDLALAC 54


>gi|325272956|ref|ZP_08139274.1| error-prone DNA polymerase [Pseudomonas sp. TJI-51]
 gi|324101909|gb|EGB99437.1| error-prone DNA polymerase [Pseudomonas sp. TJI-51]
          Length = 1026

 Score =  613 bits (1580), Expect = e-173,   Method: Composition-based stats.
 Identities = 284/1039 (27%), Positives = 458/1039 (44%), Gaps = 79/1039 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P +  L   S++S   GA S + +  +       A+AITD   L   +   Q A  
Sbjct: 1    MNSAP-YAELHCLSNFSFQRGASSADELFRRAKEQGYQALAITDECTLAGIVRAWQAAKV 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              +  ++G ++ +                   P +VLLV+   GYQ L  L++R     +
Sbjct: 60   HQLPLVVGSEVQLHDG----------------PKLVLLVADLAGYQNLCALITRARRRAE 103

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K   ++    LQ+     L +   G  G                     + LF +RL++
Sbjct: 104  -KGDYQLFRDDLQQHHHGLLALWVAGDRGD-------------TATGQWLRGLFAERLWL 149

Query: 185  NLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +  HRG D  R  Q  Q LA    +  VA  +            D + A+     V++ 
Sbjct: 150  AVHLHRGSDDARHLQGQQALAAELGIRAVACGDVHMHVRGRRALQDCMTAIRQHCQVAEA 209

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R      + +L++  ++  ++     A   T+ IA+RC F L       PR +  E   
Sbjct: 210  GRFLFANGERHLRSPVQLAELYPPEMLA--ETLAIAQRCQFDLGQLRYQYPRELVPE--- 264

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                  + LR     GL VR   G  A        RQ LD EL +I  + +  YFL V D
Sbjct: 265  -AHTPASWLRALCEQGLPVRWPHGPSA------KVRQVLDTELALIEELGYESYFLTVHD 317

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             + +A++  I    GRGS A SV  + L IT++DP++  LLFERFL+ +R   PD D+DF
Sbjct: 318  IVAFARRQRIL-CQGRGSAANSVVCFVLGITELDPMQHRLLFERFLSRERNEPPDIDVDF 376

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              DRR+EVI+YV  +YG  R A      +  A  A+RDV R L +P  QVD L K     
Sbjct: 377  EHDRREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARVLGLPMDQVDALAKCCGRW 436

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                   Q +A+           P + R+L ++ +L G  RH S H  G VI  +PL QL
Sbjct: 437  SDRIPDEQRLAE----AGFEAGSPLLRRVLILAGELIGFPRHLSQHPGGFVISQQPLDQL 492

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLI 601
            VP+     ++  V Q++   ++  GL+K D L L  L+ L++  D     RG ++ L+ I
Sbjct: 493  VPVENAAMAERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDLLQRHRGRELTLATI 552

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P +D  TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V+
Sbjct: 553  PSEDPATYAMISRAETMGVFQIESRAQMAMLPRLRPNTFYDLVIEVAIVRPGPIQGDMVH 612

Query: 662  N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                R+  +E +    P +  + + T GV ++QEQVM++A + + YS  EAD LRR+M  
Sbjct: 613  PYLRRRLKQEPVTYPSPKLKEVFERTLGVPLFQEQVMELAMVAADYSPGEADQLRRSMAA 672

Query: 720  KIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
              +    +  ++R + G  +NG     A  IFE +  F  YGF +SHAA++A++ Y ++W
Sbjct: 673  WKRHGGLEPHRQRLLQGMLRNGYELAFAERIFEQIKGFGSYGFPESHAASFALLCYASSW 732

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----- 833
            +K H P  F  A +           +  Q+AR+  I++ P  V     D  +  +     
Sbjct: 733  LKCHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSEWDCTLEPDAQGTL 792

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +   L  ++G+    AR + +A A +P+  +ED C R        R    L  AGAL  
Sbjct: 793  ALRMGLRLVRGLAEADARRLEQARAQQPWRDVEDLCLRAGLAT---RARACLADAGALRA 849

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                R Q    +  +                 +FA  +      + L        +    
Sbjct: 850  LASDRHQARWQVAAV------------QAQLPLFADVQAVPEVAVQLP---APTVAQDLV 894

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             + + LG     HPL + +  LR +G +   E      G+NI +  +VV +Q+ +T  G 
Sbjct: 895  ADYQALGTTLGPHPLTLLRTRLRALGCRSSAELQGLEHGDNIAVTGLVVGRQRPQTASG- 953

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + +VT  +         +
Sbjct: 954  -VTFVTLEDEHGMVNVVVW 971


>gi|116667785|pdb|2HQA|A Chain A, Crystal Structure Of The Catalytic Alpha Subunit Of E.
           Coli Replicative Dna Polymerase Iii
          Length = 917

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 393/935 (42%), Positives = 552/935 (59%), Gaps = 37/935 (3%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + + P FVHL+VHS YS ++G      ++ K AA   PA+AITD  NL   ++F      
Sbjct: 1   MSE-PRFVHLRVHSDYSXIDGLAKTAPLVKKAAALGXPALAITDFTNLCGLVKFYGAGHG 59

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGI+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60  AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
           G     I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++
Sbjct: 110 GAAGPIIDRDWLIEL-NEGLILLSGGRXGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168

Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            L R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +   
Sbjct: 169 ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228

Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            RPR  +P  Y ++  E   +F+D+PEAL NTVEIA+RC+  +++       +   +   
Sbjct: 229 KRPRNYSPQQYXRSEEEXCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +  F GYFLI
Sbjct: 284 GDXSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQXGFPGYFLI 343

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+S PDFD
Sbjct: 344 VXEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSXPDFD 403

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           +DFC ++RD+VI +V + YG + V+QIITFG+  AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404 VDFCXEKRDQVIEHVADXYGRDAVSQIITFGTXAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
           P DP   +  +A   + +  E   AD  V  L++ ++KLEG+ R+A  HA G+VI    +
Sbjct: 464 PPDPGXTL-AKAFEAEPQLPEIYEADEEVKALIDXARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
           +   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523 TDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEXINKRRAKNGEP 582

Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             D++ IP DD +++  L    T  +FQLES G +  ++ +QPDC ED IALV+L+RPGP
Sbjct: 583 PLDIAAIPLDDKKSFDXLQRSETTAVFQLESRGXKDLIKRLQPDCFEDXIALVALFRPGP 642

Query: 655 ID--NIVVYNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
           +    +  + +RK+G+E+I        H  + P+L+ T G+I+YQEQV QIAQ+LSGY+L
Sbjct: 643 LQSGXVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVXQIAQVLSGYTL 702

Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             AD LRRA GKK  EE  KQ+  F  GA KNGI+  +A  IF+L+ KFA YGFNKSH+A
Sbjct: 703 GGADXLRRAXGKKKPEEXAKQRSVFAEGAEKNGINAELAXKIFDLVEKFAGYGFNKSHSA 762

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
           AYA++SYQT W+K HYP EF AA  T + DN EK+     +  +  ++I+PP +N+    
Sbjct: 763 AYALVSYQTLWLKAHYPAEFXAAVXTADXDNTEKVVGLVDECWRXGLKILPPDINSGLYH 822

Query: 828 FKVG-DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           F V  D  I Y + AIKGVG      I+EA      F  L D C+R D+KKLNRRVLE L
Sbjct: 823 FHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKL 882

Query: 886 VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
           + +GA D  G  R  L  SL +  K A    K   
Sbjct: 883 IXSGAFDRLGPHRAALXNSLGDALKAADQHAKAEA 917


>gi|41409574|ref|NP_962410.1| error-prone DNA polymerase [Mycobacterium avium subsp.
            paratuberculosis K-10]
 gi|71151829|sp|Q73U92|DNAE2_MYCPA RecName: Full=Error-prone DNA polymerase
 gi|41398405|gb|AAS06026.1| DnaE2 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 1093

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 276/1038 (26%), Positives = 480/1038 (46%), Gaps = 60/1038 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S  +  L  HS++S L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 54   SSVPYAELHAHSAFSFLDGASTPEEMVEEAARLDLRALALTDHDGLYGAVRFAEAAAELD 113

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ + G +L +        + + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 114  VRTVFGAELSLGP------SARTEAPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 167

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
               R  L  L E       +LTG   G + +A        A + L      FG  R+ + 
Sbjct: 168  GKPRYDLDALTEAAGGHWHILTGCRKGHVRQALSDGGPDAAARALADLVDRFGAARVSIE 227

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L RH    D  R + +  LA    + +VAT  + F           + A+     +    
Sbjct: 228  LTRHGQPLDDERNAALAALAPRFGVGVVATTGAHFAGPSRRRLAMAMGAIRARESLDSAA 287

Query: 245  RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     +L++ +EM  +F+  P+A+    E+  +C+F L + AP LP F   +    
Sbjct: 288  GWLAPLGGSHLRSGAEMARLFAWRPQAVTAAAELGEQCAFGLALIAPRLPPFDVPDG--- 344

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E++ LR   + G   R          HA     +++ EL VIA+++F GYFL+V D 
Sbjct: 345  -HTEDSWLRQLTMTGARDRYG-----SPEHAPRAYAQIEHELKVIAQLQFPGYFLVVHDI 398

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
             ++ ++NNI    GRGS A S   YAL +T +DP+   LLFERFL+P R   PD D+D  
Sbjct: 399  ARFCRENNIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDMDIE 457

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+R++VI+YV ++YG +  AQ+    + + K A+RD+ RAL     Q D   K I +  
Sbjct: 458  SDQREKVIQYVYDRYGRDYAAQVANVITYRGKIAVRDMARALGYSQGQQDAWSKQISSWS 517

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                S        +             +++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 518  GPADSPDVEGIPPQ-------------VIDLANQVRNLPRHLGIHSGGMVICDRPIADVC 564

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+      +  V Q++       GL+KFD LGL  L+ L  ++D +A+   ++VDL+ + 
Sbjct: 565  PVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGIEVDLARLD 624

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660
              +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  
Sbjct: 625  LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 684

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R+NG + ++  HP ++P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAM  K
Sbjct: 685  YIRRRNGVDPVLYDHPSMEPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 744

Query: 720  KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            +  E M + + RF  G    +G    +    +E L  FA++GF +SHA ++A + + ++W
Sbjct: 745  RSTERMRRLRSRFYDGMRALHGAPDEVIDRTYEKLEAFANFGFPESHALSFASLVFYSSW 804

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836
             K H+P  F AA +  +       +    DAR+  + +  P VN       +      + 
Sbjct: 805  FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAHATLENAGTEVR 864

Query: 837  YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L A++ +G   A  +++    + PF SL D  +R+   +L+ +  E+L  AGA  CFG
Sbjct: 865  LGLGAVRHIGDDLAEKLVQERKANGPFTSLLDLTARL---QLSVQQTEALATAGAFGCFG 921

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             SR +                   T + + +      +      +      +       +
Sbjct: 922  MSRRE----------ALWAAGAAATQRPDRLPGVGSSS-----HIPALPGMSELELAAAD 966

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     +P    +  L  MG+       +   G+ + +A  V  +Q+  T +G  +
Sbjct: 967  VWATGISPDSYPTQFLRDDLDAMGVVPAARLGSVPDGDRVLIAGAVTHRQRPGTAQG--V 1024

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             ++   +          P
Sbjct: 1025 TFLNLEDETGMVNVLCTP 1042


>gi|146306963|ref|YP_001187428.1| error-prone DNA polymerase [Pseudomonas mendocina ymp]
 gi|167016911|sp|A4XTN0|DNAE2_PSEMY RecName: Full=Error-prone DNA polymerase
 gi|145575164|gb|ABP84696.1| DNA polymerase III, alpha subunit [Pseudomonas mendocina ymp]
          Length = 1026

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 268/1037 (25%), Positives = 436/1037 (42%), Gaps = 79/1037 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P +  L   S++S   GA S   + ++ A     A+AITD   L   +   Q A   G+
Sbjct: 2    TPDYAELHCLSNFSFQRGASSARELFERAARLGYRALAITDECTLAGIVRAWQAARETGL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
              I+G ++                P    P +VLL     GYQ L  L++        K 
Sbjct: 62   ALIVGSEM----------------PIEGGPKLVLLAEDLAGYQALCRLITVARRR-AEKG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+            L             A +    Q ++      ++ F DRL++ ++
Sbjct: 105  RYRLLREDFDTPLAGLL-------------AIWLAEPQASDSEGAWLRQRFADRLWLGIE 151

Query: 188  RHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             HRG  D  R  Q+  LA   ++P +A  +    +       D + A+     V++    
Sbjct: 152  LHRGADDAARLRQLQALAARLQIPALACGDVHMHARGRRALQDCMTAIRQHLPVAEAGAW 211

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               P+     R           E L+ T+ +A RC F L       P  +     D    
Sbjct: 212  LF-PNGERHLRRREELAELYPQELLDETLRVAARCHFELDQLKYQYPHELVPAGHD---- 266

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR++   GL  R   GA          R +++ EL +I  +K+  YFL V D + W
Sbjct: 267  ASSWLRHRVEEGLRWRWPDGAST------KVRTQVEHELQLITELKYESYFLTVHDIVSW 320

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--FSLLFERFLNPDRMSMPDFDIDFCQ 424
            A+K +I    GRGS A S   +AL IT+++P      LLFERFL+ +R   PD D+DF  
Sbjct: 321  ARKQHIL-CQGRGSAANSTVCFALGITELNPDNSGSRLLFERFLSRERNEPPDIDVDFEH 379

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EVI+YV  +YG +R A      +     ALRDV +AL +P  QV  L         
Sbjct: 380  ERREEVIQYVFRRYGRQRAALTAVASTYHGAGALRDVAKALGLPPDQVGALADCCGRWSD 439

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            H    + + +           PS+ R+L ++ +L G  RH S H  G VI + PL  LVP
Sbjct: 440  HMPDAERLRE----AGFDPDSPSLHRILTLAGELIGFPRHLSQHPGGFVISEHPLQTLVP 495

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +     ++  V Q++   ++  GL+K D L L  L+ L++    + + RG +  L+ +P 
Sbjct: 496  VENASMAERTVIQWDKDDLDLVGLLKVDILALGMLSALRRCFALIERYRGTRWTLASLPQ 555

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662
            +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+  
Sbjct: 556  EDAATYAMISRADTVGVFQIESRAQMAMLPRLRPKTFYDLVIQVAIVRPGPIQGDMVHPY 615

Query: 663  -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R+N +E +      + P+   T GV ++QEQVM++A + + YS  EAD LRR+M    
Sbjct: 616  LRRRNDEEPVEYPSDELRPVFARTLGVPLFQEQVMELAMVAADYSPGEADELRRSMAAWK 675

Query: 722  KEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            +    +  ++R  S   + G +      IF  +  F  YGF +SHAA++A+++Y + W+K
Sbjct: 676  RHGGLEPHRQRLTSRMLEKGYTAEFTARIFRQIEGFGSYGFPESHAASFALLTYASCWLK 735

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRI 835
             H P  +  A +           +  QDAR+  I++ P  V     D  +         I
Sbjct: 736  CHEPAAYACALVNSWPMGFYSPDQVLQDARRHGIEVRPADVRHSAWDCSLEPSDGEQPAI 795

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L  ++G     A  I       PF  ++D C R     L+ R  E L  AGAL    
Sbjct: 796  RLGLRLLRGFREEDALRIEATRQAAPFTDVDDLCRRA---TLDARARECLADAGALRGLA 852

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R +   ++  +                 +FA                          +
Sbjct: 853  GNRYRARWAVAGV------------EPQLPLFAGHSSREEP----VALPRPTVGEDLLTD 896

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     HPL + +  LR    +   E      G  + +A +V+ +Q+ +T  G  +
Sbjct: 897  YATFGTTLGPHPLALLRERLRAKRCRSSHELCTVEHGRPVSVAGLVIGRQRPQTASG--V 954

Query: 1016 GWVTFSEPAKEYEANFF 1032
             +VT  +         +
Sbjct: 955  IFVTLEDEFGMVNVVVW 971


>gi|323142803|ref|ZP_08077516.1| DNA polymerase III, alpha subunit [Succinatimonas hippei YIT 12066]
 gi|322417448|gb|EFY08069.1| DNA polymerase III, alpha subunit [Succinatimonas hippei YIT 12066]
          Length = 1206

 Score =  612 bits (1578), Expect = e-172,   Method: Composition-based stats.
 Identities = 387/1051 (36%), Positives = 570/1051 (54%), Gaps = 62/1051 (5%)

Query: 23   LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82
            ++G  S+  I+ + AA + PA+AITD +N+   ++F     +AGI+PI+G  ++++ +  
Sbjct: 1    MDGLESVGAIVKRAAALKIPALAITDISNICGFIKFYTACKSAGIKPIMGADIEVEEEVK 60

Query: 83   LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRICLSWLQEIGT 141
                        T   + LL     G Q L +++S  +L  D G  + +  L+ L++  +
Sbjct: 61   PGEKA-------TSFKLTLLAMDRVGQQNLYDILSDAWLRSDAGAFNAKTSLADLKKY-S 112

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQV 200
            EG+I+L G   G I        S+    RL  + + F DR    + R +R  +   E+  
Sbjct: 113  EGIIILDGFR-GDIAAMAQRKDSKAIRARLKFYLENFNDRFCFEITRTNRIGESEFENFA 171

Query: 201  VQLAYTHELPLVATNNSLFLSEED---------YEAHDVLMAVAHSTVVSQKDRPR-VTP 250
            + L   + +  VATN+++FL  ED         Y+ HDV +++        K+  R  + 
Sbjct: 172  LNLCVEYNIAPVATNDTVFLFGEDNVGKDGFSDYQIHDVRVSIQAGCQRGNKEMARKYSK 231

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            + YLK   +M ++F+D+PEAL+NT  IA RC+  +++                       
Sbjct: 232  EQYLKTPEQMEALFADIPEALQNTRNIAERCNIEIEL-----DHPRLPRYPTGDLSPAEY 286

Query: 311  LRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            LR KA  GLE     L      +    Q Y  RL+ EL+VI  M F GYFLIV +FIQW+
Sbjct: 287  LRKKAAEGLEERLEFLYPDEKERNEKRQTYVDRLNTELDVIINMDFPGYFLIVMEFIQWS 346

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K++ +PVGPGRGSG GS+ AY+L ITD DPLRF LLFERFLNP+R+SMPDFD+DFCQ  R
Sbjct: 347  KEHGVPVGPGRGSGGGSLVAYSLKITDFDPLRFDLLFERFLNPERISMPDFDVDFCQRNR 406

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            ++ + +V+N+YG+  V+QI TFG++  KAA++D GRAL M Y  VD + K +P  P    
Sbjct: 407  EKTLEHVKNRYGNNAVSQIATFGTMAPKAAIKDAGRALGMGYGAVDFVAKQLPTQPGLTF 466

Query: 488  S---------LQAIADDSRFREAR-----LADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
                               F           D     L+ I+ +LEG+ R+   HAAG+V
Sbjct: 467  KAAMGIGKDGKPCDPLAPDFVNLYQKALQDDDRQRVELIHIALRLEGVIRNIGKHAAGVV 526

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            I     ++  P+  D      +TQF+ K +E AGL+KFDFLGL TLT++  +L  +  R 
Sbjct: 527  ISPTRTAEFSPLMLDS-DGNSITQFDKKDVEHAGLVKFDFLGLTTLTIIDDALTMINARK 585

Query: 594  VKVD-----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             K       +  +P++D E++ +L    T  +FQLES+GMR+ +  MQPD  +D+IALV+
Sbjct: 586  AKHHEPPVNIHAVPYEDPESFAVLQQCETTAVFQLESAGMRKLIGQMQPDRFDDLIALVA 645

Query: 649  LYRPGPIDNIVV--YNNRKNGKEKIVSIHPL-----IDPMLKETQGVIIYQEQVMQIAQL 701
            LYRPGPI + +V  +  RK+GKE++    P      + P+L  T GVI+YQEQVMQIAQ+
Sbjct: 646  LYRPGPIKSGMVDHFVQRKHGKEEVAYPSPDFQDLDLKPILDSTYGVIVYQEQVMQIAQV 705

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            L+GYSL  AD+LRRAMGKK   EM  Q+  F  GA K G    IA+ IF+ + KFA+YGF
Sbjct: 706  LAGYSLGGADILRRAMGKKNPAEMAGQRSVFKEGAGKKGKDTDIAMKIFDQVEKFAEYGF 765

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NKSH+AAYA++++ T W+KTHYP EFLAA MT +   VEK+  +  +  +  I++ PP V
Sbjct: 766  NKSHSAAYALVAWWTLWLKTHYPAEFLAAMMTADRQRVEKLVSYIAECNRLKIKVNPPDV 825

Query: 822  NTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                 +F V D   I Y + A+KG+G      I++  A KPF    DF  RV  K LNRR
Sbjct: 826  TEGLFNFTVNDAGEIIYGIGAVKGIGEDVVEDIIKERAQKPFKDFFDFVKRVGPKHLNRR 885

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
              E+LV +GALD  G SR Q++ S+    KYA     +  +   ++FA    T +   T 
Sbjct: 886  TFEALVASGALDKLGPSRAQMMASIPTAMKYAVQESSDAASGQLDLFAAISETTA--PTF 943

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA--TIRGNNIRLA 998
                  +   R   E+ VLG Y SGHP+++Y   L +               R N +   
Sbjct: 944  VACRPWSEKYRLYLEKNVLGLYLSGHPINIYIDELTRNYRSTISTLRPGTAQRPNPVTFY 1003

Query: 999  AMVVSKQQKKTRK-GSRIGWVTFSEPAKEYE 1028
             +V+S  ++ ++  GS+   +   +   + E
Sbjct: 1004 GIVISSTERTSKNDGSKFYILILDDGTSQLE 1034


>gi|299822765|ref|ZP_07054651.1| DNA-directed DNA polymerase III alpha subunit [Listeria grayi DSM
            20601]
 gi|299816294|gb|EFI83532.1| DNA-directed DNA polymerase III alpha subunit [Listeria grayi DSM
            20601]
          Length = 1110

 Score =  612 bits (1578), Expect = e-172,   Method: Composition-based stats.
 Identities = 366/1029 (35%), Positives = 575/1029 (55%), Gaps = 42/1029 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S++ LL    SL+ ++ K  A    ++AITD N L+ A+ F +K  AA I+PI
Sbjct: 3    FVHLQVKSAFDLLSSTASLDALIAKAKACGFDSLAITDKNALYGAVNFYEKCQAAQIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + +           G         ++LL  T  GYQ L+++ S +   D+      
Sbjct: 63   IGMTVSV----------YGYIDTTRSYELLLLAETTAGYQNLLKIASAIQTQDEK----V 108

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
            + L+WL+  G +GLI ++ G++G ++     +S + A +    ++ +F  D  ++++Q  
Sbjct: 109  LPLNWLKAYG-KGLIAISPGATGEVEHLLMDSSPESAAEVTAYWQSIFSQDSFFLSIQAE 167

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                   +  V   +   E+ +V T +  +L   D  A +VLMA+  +  V  +  P   
Sbjct: 168  NP---RLKEAVQNFSSAQEIDVVLTKDVQYLDAGDVRAQEVLMAIRDNRTVDYEKLPLAG 224

Query: 250  PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P+          S+ +D   +A E T +IA RC  ++ +   +LPRF  +          
Sbjct: 225  PNFLASADEMAASLTTDFEQQAYEQTAKIAARCQVVIPMGLQLLPRFPLRSG----SNAS 280

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             EL   A+AGL+              + Y  RL +EL+VI +M F  YFLIV D +++A+
Sbjct: 281  AELEKLALAGLQE-------RNVARDKRYLDRLHYELDVITKMGFQDYFLIVWDVMRFAR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ +YAL ITD+DP+ + LLFERFLNP+R++MPD D+DF  +RRD
Sbjct: 334  EVGILTGPGRGSAAGSLVSYALRITDVDPIAYRLLFERFLNPERVTMPDIDLDFPDNRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVIRYV +KYG + VAQI TFG+L AKAA+RD  R   +    +    K+IP+     + 
Sbjct: 394  EVIRYVVDKYGADHVAQIGTFGTLAAKAAIRDTARTFGLNAVLLSEWSKMIPSQLGITLK 453

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                  + R      +    + + EI++KLEGL RH STHAAGIVI D PL    P+   
Sbjct: 454  AAR-EQNPRLNSHIHSSHVNEMIWEIAEKLEGLPRHISTHAAGIVINDEPLVTYTPVQSG 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607
               D  +TQ+ M  +E+ GL+K DFLGL+ L+LL + L  +   R   + L+ IP +D  
Sbjct: 513  S-GDARLTQYAMGELERIGLLKMDFLGLRNLSLLDRILKIVNYNRTKPLTLADIPLEDKA 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T +L     T G+FQ ESSG+R+ L  ++P   EDI+A+ +LYRPGP++ I  +  RK+G
Sbjct: 572  TLNLFQKGDTTGVFQFESSGIRRVLRKLKPTSFEDIVAVDALYRPGPMEQIDTFIARKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +EKIV  H  +  +L  T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK +E +D 
Sbjct: 632  EEKIVYPHEDLKQILDVTYGVIVYQEQIIQVANRMAGFSLGEADILRRAVSKKKREVLDG 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +++F+SGA+ NG ++T A  +++L+ +FA+YGFN+SHAAAY+ I++Q A++K HYP  F
Sbjct: 692  FRKQFVSGANANGYAETTANEVYDLIVRFANYGFNRSHAAAYSKIAFQLAYLKAHYPAAF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVG 846
            +++ ++    N EKI ++  +A+ + I+++ PSVN     F+V  +N+I YSL  I+ V 
Sbjct: 752  MSSLLSSVFGNDEKIAQYVTEAKNYGIEMLAPSVNKSGYYFQVEQENKIRYSLRIIRKVP 811

Query: 847  TTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  ++       PF    DFC R+ +  L  +VLE+L++AGA D FG  R  L+ S+
Sbjct: 812  NKFILELLNVRKQGGPFADFFDFCERMPNNMLTHQVLEALIYAGAFDEFGKDRAVLMASI 871

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKG-TFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +   +Y     ++      N+FA E     S K    +        + + E+   G Y S
Sbjct: 872  ETGLQYTDLFGESEAG--MNLFATEDSFLKSMKPKYREADPMPMDTKLDKEKEFTGQYVS 929

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+  Y+ + + + +    E      GN+  +A  V   +  +T+KGS++ ++T S+ +
Sbjct: 930  AHPVTSYQQVAQTLAVT---ELADVTNGNSYAIAVYVHQIKTVRTKKGSQMCFLTISDAS 986

Query: 1025 KEYEANFFP 1033
            KE+ A  FP
Sbjct: 987  KEFRAVVFP 995


>gi|296121580|ref|YP_003629358.1| DNA polymerase III, subunit alpha [Planctomyces limnophilus DSM 3776]
 gi|296013920|gb|ADG67159.1| DNA polymerase III, alpha subunit [Planctomyces limnophilus DSM 3776]
          Length = 1026

 Score =  612 bits (1577), Expect = e-172,   Method: Composition-based stats.
 Identities = 275/1033 (26%), Positives = 465/1033 (45%), Gaps = 75/1033 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-IQ 68
            S+  L   +++S LE A   + ++ + A     A+A+TD N+L   +  +        ++
Sbjct: 2    SYAELHCLTNFSFLEAASHPDEMVARAAELGYSALAVTDINSLAGVVRANTATKDHPPLK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G ++                       IV+ V    GY  L  L++        K  
Sbjct: 62   LIVGSEI----------------RPVDASPIVVWVKDRRGYANLCRLITTGRRR-APKGE 104

Query: 129  VRICLSWLQEIGTEGLIML----TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
              + L  + +    GL+             I+ A+              ++ +FG+   +
Sbjct: 105  CHLTLDDIAQ-HAAGLLAGVVPPLHCEEFSINDAYL-------------YRDIFGEAFLL 150

Query: 185  -NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQ 242
              L R   +D YR   +  L+    LPLVA  N LF   +    HDVL A+   T V   
Sbjct: 151  AELHR-GPHDHYRRGWLQDLSRQTNLPLVAAGNVLFHVPDRKPLHDVLTAIRLGTTVAQV 209

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             +  +     +L+    + +I+ D+P ALE T+ IA +C+F L       P  +      
Sbjct: 210  GEALQTNAQRHLRPLDSLKAIYGDIPGALERTLMIAEQCTFSLDELRYEYPEELAPPGF- 268

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                    L++    G E R   G        +  R  L+ ELN+I  +++  YFL V D
Sbjct: 269  ---SPIQYLQHLTWQGAEQRYPHGL------PEKIRHLLEHELNLIEELRYEPYFLTVWD 319

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+  +I    GRGS A S   Y L IT +DP R  +LFERF++ +R   PD D+DF
Sbjct: 320  IVRFARSRDIL-CQGRGSAANSAVCYCLGITAVDPERIDVLFERFISRERDEAPDIDVDF 378

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+EV++Y+ NKYG ER        + + ++A+RDVG+AL      VDRL K   + 
Sbjct: 379  EHERREEVLQYLYNKYGRERAGIAAVTITYRPRSAIRDVGKALGFSLDLVDRLAKNADHY 438

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
             A         +        +   +  + + +  +L G  RH S H  G+VI   PL +L
Sbjct: 439  RASDDFRLRCQE----AGLDIRSITGRQFVHLVGELLGFPRHLSQHVGGMVITRGPLHEL 494

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLI 601
            VP+         V Q+N   ++  G++K D L L  LT ++K    +     K   L+ I
Sbjct: 495  VPIENAAMDGRTVVQWNKDDLDDLGILKVDCLALGMLTAIRKCFALVESTTGKTLTLASI 554

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P  D   Y ++    T+G+FQ+ES      L  ++P C  D++  V++ RPGPI   +V+
Sbjct: 555  PEGDERVYDMICRADTMGVFQIESRAQMSMLPRLKPRCYYDLVIEVAIVRPGPIQGDMVH 614

Query: 662  N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                R+ G+E+    +  I  +LK+T GV ++QEQ MQ+A + +G++  EAD LRRAMG 
Sbjct: 615  PYLRRRFGEEEETYPNEAIRRVLKKTLGVPLFQEQCMQLAIVAAGFTPGEADQLRRAMGA 674

Query: 720  KIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
              +   +D+ +++ + G  ++G+    A  +F+ +  F +YGF +SHAA++A++ Y +AW
Sbjct: 675  WRRPGVIDQFRQKLLDGMKQHGLEGEFAERVFQQIRGFGEYGFPESHAASFALLVYVSAW 734

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K H+P +F AA +  +        +  QD R+  I++ P  VN    D  +    +   
Sbjct: 735  LKYHFPAQFTAAVINSQPMGFYAPSQLVQDVRKHQIEVRPVDVNRSEWDCTLEQESLRLG 794

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
               IKG+  + A  ++E+  D  F S+ DF  R     L +  +E L  A AL     +R
Sbjct: 795  FCLIKGLQESAALTVVESRRDGSFTSMHDFVRRTS---LPQAQVERLAEADALASLNQTR 851

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
               + +  ++         ++  +   +F   +     + TL   + E        + R+
Sbjct: 852  RVAVWNALSV---------SKKPRQRTLFDDLEPEEEPEATLPTMAPE---EEVHADYRM 899

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             G     HPL  ++  L  +GI   E          +++A +V+ +Q+  T KG  I +V
Sbjct: 900  TGLSLRSHPLAFHRERLETLGIIPAERLAQVPDDTLVKVAGIVLMRQRPSTAKG--ITFV 957

Query: 1019 TFSEPAKEYEANF 1031
            T  +         
Sbjct: 958  TIEDETGTANLVV 970


>gi|226305466|ref|YP_002765426.1| error-prone DNA polymerase [Rhodococcus erythropolis PR4]
 gi|226184583|dbj|BAH32687.1| error-prone DNA polymerase [Rhodococcus erythropolis PR4]
          Length = 1095

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 281/1032 (27%), Positives = 468/1032 (45%), Gaps = 61/1032 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS++S L+GA     ++++       AIA+TD +  +  + F++ A   G++ +
Sbjct: 61   YAELHAHSAFSFLDGASPPEELVEEAVRLGLEAIAVTDHDGFYGVVRFAEAAREWGMRTV 120

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +D         +  T  P    +++L    EGY+RL   ++  +L    K  ++
Sbjct: 121  FGAELSLD------SVPRTGTADPGGTHLLVLARGQEGYRRLSREIAAAHLAGGEKGKLQ 174

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 L E       +LTG   G + +A      + A + L    + FG +R+ V L  H
Sbjct: 175  YNYDVLTEAAGGHWQILTGCRKGHVRQALTSGGREAAAEALQDLVERFGAERVSVELTHH 234

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
                D  R + + +LA    L  VAT  + F +         + AV     + +      
Sbjct: 235  GLAEDDERNAVLAELARERGLRTVATTAAHFAAPPRRRLAMAMAAVRARQSLDEAAGWLA 294

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T   +L++ +EM ++FS  PEA+    ++ R C+F L++ AP LP F           E
Sbjct: 295  PTGGAHLRSGAEMATLFSLYPEAVSGAADLGRECAFDLKLIAPKLPPFDVPAG----HTE 350

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR   + G   R            + Y+Q L+ EL +I  + F GYFL+V D + + 
Sbjct: 351  ASWLRELTMVGALERYG----PPEGAPKAYKQ-LEHELAIIEGLNFPGYFLVVHDIVSFC 405

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N+I    GRGS A S   YA+ IT++DP+R  LLFERFL P+R   PD D+D   DRR
Sbjct: 406  KNNDIL-CQGRGSAANSAVCYAIGITNVDPVRNKLLFERFLAPERDGPPDIDVDIESDRR 464

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +E I++V  KYG    AQ+    + + K+++RD+ RAL     Q D   K +        
Sbjct: 465  EEAIQHVYAKYGRTYAAQVANVITYRGKSSVRDMARALGFSQGQQDAWSKQVGRWGGIDK 524

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            +                      +LE++ ++EG  RH   H+ G+VI DRP++ + P+  
Sbjct: 525  N--------------ADTDIPRPVLELAAQIEGYPRHLGIHSGGMVICDRPIADVCPVEW 570

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
               ++  V Q++      AGL+KFD LGL  L+ L   +D +A+   + VDL+ +   + 
Sbjct: 571  ARMANRSVLQWDKDDCAAAGLVKFDLLGLGMLSALHYMMDLVAEHKGITVDLAQLDLSET 630

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664
              Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y  R
Sbjct: 631  AVYEMLQRADSVGVFQVESRAQMATLPRLKPRNFYDLVVEVALIRPGPIQGGSVHPYIRR 690

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723
            +N  E +   HP ++  L+ T GV ++QEQ+MQ+A  ++G++ SEAD LRRAM  K+  E
Sbjct: 691  RNKLEPVSYDHPSLEKALERTLGVPLFQEQLMQMAVDVAGFTPSEADQLRRAMGSKRSTE 750

Query: 724  EMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            +M++ + R   G    +GI   +A  I+E L  FA++GF +SH+ ++A + + ++W K H
Sbjct: 751  KMEQLRARLYQGMRDLHGIGDEVADRIYEKLYAFANFGFPESHSQSFAALVFYSSWFKLH 810

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIYYSLA 840
            +P  F A  +  +       +    DAR+  +Q+    +N       V      +   L 
Sbjct: 811  HPAAFCAGLLRAQPMGFYSPQSLVADARRHGVQVHGADINVSLAHATVEAGGFEVRLGLG 870

Query: 841  AIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             ++ +G   A  I+E      PF S  D   RV+   L     ESL  AGAL  FG SR 
Sbjct: 871  EVRNIGDALAEKIVEQRDLGGPFTSFLDLTGRVE---LTTAQAESLATAGALASFGISRR 927

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            + L +       A     +R                  +T       +       +    
Sbjct: 928  EALWA----AGAAAGERPDRLPG-----------IGASVTAPTLPGMSDVELAAADVWAT 972

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G     +P    +P L  +G+      +    G+ + +   V  +Q+  T  G  + ++ 
Sbjct: 973  GVSPDTYPTQFLRPQLDALGVVPASRLLDIPDGDRVLVGGAVTHRQRPATAAG--VTFIN 1030

Query: 1020 FSEPAKEYEANF 1031
              +         
Sbjct: 1031 LEDETGMVNVVC 1042


>gi|118471589|ref|YP_886009.1| error-prone DNA polymerase [Mycobacterium smegmatis str. MC2 155]
 gi|118172876|gb|ABK73772.1| DNA polymerase III, alpha subunit, putative [Mycobacterium smegmatis
            str. MC2 155]
          Length = 1095

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 272/1043 (26%), Positives = 468/1043 (44%), Gaps = 61/1043 (5%)

Query: 2    TQYLEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
               +  S   +  L  HS+YS L+GA +   ++++ A     AIA+TD + L+  + F++
Sbjct: 52   QARMPASALPYAELHAHSAYSFLDGASTPEELVEEAARLNLRAIALTDHDGLYGVVRFAE 111

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A    +  + G +L +          + + P P  P +++L    EGY+RL   +++ +
Sbjct: 112  AARELDVATVFGAELSLSN------VARTEDPDPPGPHLLVLARGPEGYRRLSREIAKAH 165

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179
            L    K   R     L E       +LTG   G + +A        A   L      FG 
Sbjct: 166  LAGGEKGRPRYDFDQLTEAAGGHWHILTGCRKGHVRQALSDGGPDAAAAALADLVDRFGA 225

Query: 180  DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            DR+ + L  H    D  R + + +LA    L +VAT  + F +         + A+    
Sbjct: 226  DRVSIELTHHGHPCDDERNAALAELAPRFGLGVVATTAAHFATPSRGRLAMAMAAIRARN 285

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
             +                  E ++   D            +           ++   +  
Sbjct: 286  SIDTAAGWLAPLGGVHLRSGEEMARLFDPEFVAAAADLGEQCA-----FGLALIAPQLPP 340

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                    E++ LR+ A+AG   R           A     +++ EL +I +++F GYFL
Sbjct: 341  FDVPDGHTEDSWLRHLAMAGAARRYGPP-----ERAPKAYAQIEHELRIIEQLRFPGYFL 395

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            +V D  Q+ + NNI    GRGS A S   YAL +T++DP+   LLFERFL+P R   PD 
Sbjct: 396  VVHDITQFCRDNNIL-CQGRGSAANSAVCYALGVTNVDPIANDLLFERFLSPARDGPPDI 454

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DID   D R+ VI+YV  +YG +  AQ+    + + ++A+RD+ RAL     Q D   K 
Sbjct: 455  DIDIESDLRENVIQYVYERYGRDYAAQVANVITYRGRSAIRDMARALGFSQGQQDAWSKH 514

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            +      P S                    ++++E++ ++  L RH   H+ G+VI DRP
Sbjct: 515  LSRWDGRPDSP-------------DVAEIPEQVIELANQIANLPRHMGIHSGGMVICDRP 561

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597
            ++ + P+      +  V Q++       GL+KFD LGL  L+ L  ++D +A+   ++VD
Sbjct: 562  IADVCPVEWARMENRSVLQWDKDDCAAIGLVKFDMLGLGMLSALHYAIDLVAEHKGIEVD 621

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID- 656
            L+ +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI  
Sbjct: 622  LATLDLSEPAVYEMLQRADSVGVFQVESRAQMATLPRLKPREFYDLVVEVALIRPGPIQG 681

Query: 657  -NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             ++  Y  R+NG+E +   HP ++P LK+T GV ++QEQ+MQ+A   +G+S +EAD LRR
Sbjct: 682  GSVHPYIKRRNGQEPVTYDHPSMEPALKKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRR 741

Query: 716  AM-GKKIKEEMDKQKERFISGAS-KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            AM  K+   +M + + RF  G   ++GI+  +A  I+E L  FA++GF +SH+ ++A + 
Sbjct: 742  AMGSKRSTAKMRRLRSRFYDGMRERHGITGVVADRIYEKLEAFANFGFPESHSLSFASLV 801

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            + ++W K H+P  F AA +  +       +    DAR+  + +  P VN       + + 
Sbjct: 802  FYSSWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAHAGLENR 861

Query: 834  --RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               +   L +++ +G   A+ I++   A+  F SL D  SRV   +L     E+L  AGA
Sbjct: 862  GLDVRLGLGSVRHIGDDLAQRIVDEREANGQFTSLLDLTSRV---QLTVPQTEALATAGA 918

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            L CFG +R + L +       A     +R     +              +      ++  
Sbjct: 919  LGCFGITRREGLWAAG----AAATQRPDRLPGVGS-----------STHIPPLPGMSALE 963

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                +    G     +P +  +  L  +G+   +  +    G  I +A  V  +Q+  T 
Sbjct: 964  LSAADVWATGISPDSYPTEYLRKHLDSLGVVPTDRLLDVADGTRILVAGAVTHRQRPATA 1023

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
            +G  + ++   +          P
Sbjct: 1024 QG--VTFINLEDEKGMVNVLCAP 1044


>gi|293977832|ref|YP_003543262.1| DNA-directed DNA polymerase III (polc) [Candidatus Sulcia muelleri
            DMIN]
 gi|292667763|gb|ADE35398.1| DNA-directed DNA polymerase III (polc) [Candidatus Sulcia muelleri
            DMIN]
          Length = 1405

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 318/1066 (29%), Positives = 533/1066 (50%), Gaps = 69/1066 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC- 63
            + K+  + H+  H+S+S+L   + +N+++ K       A+ ITD  NL     F  +   
Sbjct: 228  ISKNKYYSHIHNHTSFSILSSTIDINSLIKKTIEYDMDAVGITDYGNLMGVFNFINRIKN 287

Query: 64   -------AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
                      I+PIIGC+L I   D +K T         + + V       GY  L +L 
Sbjct: 288  INDNFLVKKKIKPIIGCELYISYNDLIKKT-------DKIYNQVFFAKNKNGYYNLSKLC 340

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S  ++         I  + +++     LI ++G  +  I           AEK    +  
Sbjct: 341  SHGFIDGYYSGIPIIGKNLVEKYKA-NLIAVSGDLNSEIPFTILNKGENEAEKVFKWWHN 399

Query: 177  LFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            LFGD  Y+ + RH   +    +Q +++ +    +  +  NN+ +LS++DY AHD+L+ V 
Sbjct: 400  LFGDDFYIEILRHGLKEEDHVNQILLKFSKKFNVKFIPQNNNFYLSQKDYHAHDILLCVK 459

Query: 236  HSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI---- 284
            +S   S                + Y KN+++M ++FSDLPEA +N  E+  +  F     
Sbjct: 460  NSQKQSTPIGKGRGFRFGFPNQEFYFKNKNQMYNLFSDLPEAFDNLKELIEKVEFYDITN 519

Query: 285  -LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
             + +    +P    K+       E   LR     G +           Y     +++++F
Sbjct: 520  KILLPKFDIPNKWIKKYCIKNNYENEYLRYLTYKGAKK-------KYLYINDIIKKKIEF 572

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL  I ++ + GYFLIV D I  AK   + VGPGRGS AGSV AY L IT+IDP++++LL
Sbjct: 573  ELETIKKIGYPGYFLIVQDLICKAKNIGVEVGPGRGSVAGSVVAYCLGITNIDPIKYNLL 632

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFLNPDR+S+PD DIDF    R+++I +V NKYG  +VAQIIT+G + AK+++RD  R
Sbjct: 633  FERFLNPDRISLPDIDIDFDDKGREKIIEWVVNKYGKNKVAQIITYGKMGAKSSIRDTAR 692

Query: 464  ALQMPYSQVDRLCKLIPN------DPAHPVSLQAIADDSRFREARLADPSVDR------- 510
             L +P  + D + K++PN         +   L+   +                       
Sbjct: 693  VLNLPLLETDNIAKIVPNLSLKEIIKKNIKYLKKKLNSEELENVIKLKKIFKEKKTLQSK 752

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            +L+ +  +EG  R+   HA GI+I    + + +P+     S+L +TQF+   +E+ GL+K
Sbjct: 753  ILKQAMVIEGSVRNTGIHACGIIITPSDIKKYIPVSTTKYSNLLLTQFDNDVVEQVGLLK 812

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
             DFLGLKTLT+++ +L  +      + L  +   D +TY L     T+ +FQ ES GM++
Sbjct: 813  MDFLGLKTLTIIKDTLYLIK-----IPLYEVNIYDVKTYKLFKKGETVAVFQYESPGMQK 867

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
             L  ++PD  +D+IA+ +LYRPGP+  I  +  RK+G EKI    P +   L+ET G+ +
Sbjct: 868  YLRRLKPDKFDDLIAMNALYRPGPMQYITNFIARKHGLEKISYDLPELKEFLEETYGITV 927

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQVM I+Q +SG+S  +AD LR+A+GKK K+ +   K++FI G   NG SK I   I+
Sbjct: 928  YQEQVMLISQKISGFSKGDADFLRKAIGKKDKDVLINIKQKFIDGGINNGYSKNILEKIW 987

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            +    FA Y FNKSH+  Y+ I+++TA++K HYP E++A+ ++  M N++ I  F ++ +
Sbjct: 988  KDWKSFASYAFNKSHSTCYSYIAFKTAYLKAHYPAEYMASVLSNNMQNLKNITFFIEECK 1047

Query: 811  QFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASA--DKPFDSLED 867
            +  + ++ P +N     F V     I + + AIKG+G  +   I++     ++ ++S+  
Sbjct: 1048 RMGVIVLGPDINESNYKFTVNKMGYIRFGMGAIKGIGKYSVNSIIKERKLINR-YNSIFC 1106

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGY--SRMQLL------QSLDNIQKYAQWVEKNR 919
                VD + +N++VLE+LV +GA D F     R Q          ++ I K+    +  +
Sbjct: 1107 LIKNVDLRLVNKKVLENLVLSGAFDNFKKKIHRSQYFYEENGSNMIEKIIKFGVKYKNLK 1166

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
             N   ++F++ K     +   +     N+    + E+ V+G Y + HPL+ Y    +   
Sbjct: 1167 INMKNSLFSNVKDIEILEPKFKNCKKWNNIDLLKKEKEVIGMYLTSHPLNEYVYETKYFT 1226

Query: 980  IKGYEESVATIR---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
                ++         G  I +  ++     + ++   +       +
Sbjct: 1227 NASLDDINHNQEKILGKKINICGIISKSLHRISKNNKKYIIFLLED 1272


>gi|157804147|ref|YP_001492696.1| DNA polymerase III subunit alpha [Rickettsia canadensis str. McKiel]
 gi|157785410|gb|ABV73911.1| DNA polymerase III subunit alpha [Rickettsia canadensis str. McKiel]
          Length = 1200

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 405/1101 (36%), Positives = 603/1101 (54%), Gaps = 99/1101 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  I++  + ++  AI + D+ NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKIVELASLNKMSAICLADSGNLFGSLEFALYAVKKGLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I    N+               I+L+     GY+ L++L S     +  K  
Sbjct: 63   PIHGVILNIQYDINI------------FAQILLIAKDEVGYKNLLKLSSLTVTKNDRKIC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L +   EGLI L   + G + +     + + A       +++  DR Y  + R
Sbjct: 111  DHINFEDLVKY-QEGLIALCCYTDGIVGKCLLARNEEQAILFARKLQEILADRFYFEIMR 169

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +    E   +++A    +PLVATN  LF  +  + AHDVL+ ++        DR  
Sbjct: 170  HDLPEEQFIEDHYIKIAAELAIPLVATNKVLFSEKSMHYAHDVLLCISAGVTKEYPDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y K+  EM+ +FSDLP A+ENTV +  RC F     A      +          E
Sbjct: 230  VSENCYFKSPREMIELFSDLPAAIENTVNLRERCYF-----AAHANPPMLPNFATKDISE 284

Query: 308  ENELRNKAVAG-------LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             + +R +A  G                  +     +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TDLIRKEATEGLLARLAIKFKSENISLENQEELKTEYLSRLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+K+  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKQEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D + +L+P
Sbjct: 405  DFCQERREEVINYVRSKYGYNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYITELVP 464

Query: 481  NDPAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PV+  QA+ +      A   +           +  +L+ S  LEGL+RH+STHAA
Sbjct: 465  FSAVNPVTLEQAMHEVPELANAAKGNGLYNLEGEAELIKLVLDTSLILEGLHRHSSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  SD+ +  ++MK+ E AGLIKFDFLGL+TLT++      L 
Sbjct: 525  GIVIAGTDLVDIVPVYKDANSDMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            +RG+ VDL+ + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  ERGIDVDLNNMTFDDNKTYQMLCQGKGVGVFQFESVGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIK+EM++Q+E F+ GA  N IS + A +IF  +AKFA YGFNK+HAAAY 
Sbjct: 705  DLLRRAMGKKIKKEMEEQEEIFVKGAVANNISASQAKSIFATVAKFAGYGFNKAHAAAYG 764

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            VISYQTA++K +YP EFL A + LE++N +KI  F Q+A+   I+I+ P++N     F V
Sbjct: 765  VISYQTAYLKANYPAEFLVACLNLELNNHDKINLFLQEAKDSGIKIIAPNINISEGYFIV 824

Query: 831  G--------------------------------------------DNRI----------- 835
                                                         +N I           
Sbjct: 825  KSVIPQAVTCHSHEVLCHTRVGVDPEKISEMKMDDYFRGNDKEGTENDIKSCEYDKEVSA 884

Query: 836  -YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
              ++L AIKGV     + + +      PF S+ DF  R+  K +N ++LE+L+ +G  D 
Sbjct: 885  IIFALGAIKGVTPNFGKLVTDERKARGPFKSITDFIERLPPKSINSKLLENLIKSGCFDE 944

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R+QL  S+  +  YA    K + +   ++    K +      L   +  + +    
Sbjct: 945  LHDNRLQLFLSIPKLLSYATSYHKEQASNQFSL---IKVSSLSPTILIDSNYADKNTLAF 1001

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRK 1011
             E   +G + S HPL  Y+ I  ++ I    +    +      + LA ++  K  + + +
Sbjct: 1002 YEFEAMGLFISNHPLTQYQEIFSRLNILNTADLHNKLPYGTTRVNLAGVIQKKDSRMSVR 1061

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G R   +  S+P   +E + F
Sbjct: 1062 G-RFVTLVLSDPENIFELSIF 1081


>gi|254233973|ref|ZP_04927298.1| DNA polymerase III (alpha chain) dnaE2 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis C]
 gi|124599502|gb|EAY58606.1| DNA polymerase III (alpha chain) dnaE2 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis C]
          Length = 1079

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 282/1038 (27%), Positives = 482/1038 (46%), Gaps = 62/1038 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 42   SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 101

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ + G +L +        T + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 102  VRTVFGAELSL------GATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 155

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
               R     L E       +LTG   G + +A   +        L      F    + + 
Sbjct: 156  GKPRYDFDALTEAAGGHWHILTGCRKGHVAQALPQSGPTADAAALPDLVDPFTPSAVSIE 215

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L  H    D  R + +  LA    + +VAT  + F           + A+     +    
Sbjct: 216  LTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAA 275

Query: 245  RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     ++++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +    
Sbjct: 276  GWLAPLGGAHVRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPDG--- 332

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E++ LR+  +AG   R      A   ++Q     ++ EL VIA+++F GYFL+V D 
Sbjct: 333  -HTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 386

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
             ++ + N+I    GRGS A S   YAL +T +DP+   LLFERFL+P R   PD DID  
Sbjct: 387  TRFCRDNDIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 445

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K + +  
Sbjct: 446  SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSHWT 505

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                 +  I +               ++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 506  GQADDVDGIPE---------------QVIDLATQIRNLPRHLGIHSGGMVICDRPIADVC 550

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+   ++VDL+ + 
Sbjct: 551  PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 610

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660
              +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  
Sbjct: 611  LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 670

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAM  K
Sbjct: 671  YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 730

Query: 720  KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            +  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A + + +AW
Sbjct: 731  RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 790

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836
             K H+P  F AA +  +       +    DAR+  + +  P VN              + 
Sbjct: 791  FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 850

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L A++ +G   A  ++    A+ PF SL D  SRV   +L+   +E+L  AGAL CFG
Sbjct: 851  LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 907

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             SR +                   T + + +      +      +      +       +
Sbjct: 908  MSRRE----------ALWAAGAAATGRPDRLPGVGSSS-----HIPALPGMSELELAAAD 952

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     +P    +  L  MG+   E   +   G+ + +A  V  +Q+  T +G  +
Sbjct: 953  VWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQG--V 1010

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             ++   +          P
Sbjct: 1011 TFINLEDETGMVNVLCTP 1028


>gi|262037946|ref|ZP_06011366.1| DNA polymerase III subunit alpha [Leptotrichia goodfellowii F0264]
 gi|261748024|gb|EEY35443.1| DNA polymerase III subunit alpha [Leptotrichia goodfellowii F0264]
          Length = 1151

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 345/1043 (33%), Positives = 558/1043 (53%), Gaps = 40/1043 (3%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL+VH+ YSLLEG   +   +++        +A+TDT ++F  +EF +K   +GI+P+I
Sbjct: 6    VHLKVHTEYSLLEGVGKIEEYVERAKFMGIKTLAVTDT-SMFGVIEFYKKCIKSGIKPVI 64

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ +D                   S+ LL    +GY+  +  +S +      ++  +I
Sbjct: 65   GLEVFLD-----------GIVSEGEYSLTLLAKNKKGYRN-LSKLSSLSYSRFNRRRNKI 112

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L E  ++ L +L+GG    I +         A+K  +   K F +  ++ +   + 
Sbjct: 113  KYEELLEYSSD-LYILSGGIHSEIIKGISEYKYPEAKKVAVKLAKDFKENFFLEVPAVKR 171

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             +  R   + ++     +  + TN+  + ++ +     ++ ++     +          D
Sbjct: 172  LESVR-KSLKEMIKEISVGYLITNDVYYPNKGEAVLQKIMSSIKEGNKIETVQNDIFYDD 230

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             YLK+  E+   F    E  +  ++     +               +        E   +
Sbjct: 231  LYLKSFDEIKESFLQDEEFFDEGMKNTVILAENCNTDFEFDVFKFPEYELPEGISESFYI 290

Query: 312  RNKAVAGLEVRLAQGAIAK--------------GYHAQDYRQRLDFELNVIARMKFSGYF 357
            R     G+  +  +  I                    +D  +R D+EL VI  M ++GYF
Sbjct: 291  RKLVYEGIAKKYLKENIEITTEDQENEIRKKLIAKDREDVFKRADYELEVINSMGYNGYF 350

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            +IV DFI++AK++ + VGPGRGS AGS+ +YAL IT+IDPL+++L+FERFLNP+R+SMPD
Sbjct: 351  IIVWDFIKFAKESGVYVGPGRGSAAGSLVSYALNITEIDPLKYNLIFERFLNPERISMPD 410

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             DIDF Q++R+ VI YV NKYG++ VA IITFG+L+A+AA+RDVGR L +   +VD+  K
Sbjct: 411  IDIDFDQEQREIVIDYVLNKYGNKYVAHIITFGTLKARAAIRDVGRVLNVSLKKVDKAAK 470

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
            LIP +       +A+      RE   +D  +  +++ S K+EG  RHAS HAAG+VI   
Sbjct: 471  LIPFNM---DLEKALDSVGSLREMYNSDNEIKTMIDYSLKIEGRVRHASVHAAGVVISKD 527

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKV 596
             L + +P Y D ++ +  TQ+ MK +E+ G++K DFLGLK LT+L+K+++     +G  +
Sbjct: 528  VLDEEIPTYSDGKTPILSTQYQMKELEELGILKMDFLGLKNLTILRKTIENIEKNKGEIL 587

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
                I  ++ + Y L+T   TLGIFQ ES G+R+ ++ ++ +  EDI AL++LYRPGP+ 
Sbjct: 588  RTENINLENKKAYKLMTEADTLGIFQCESPGIRKLMKKLKIEKFEDITALLALYRPGPLQ 647

Query: 657  NIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +   +   KN + KI      +  +L+ET GVI+YQEQVM+IA  ++ YSL EAD LR
Sbjct: 648  SGMVEDFIAAKNAEAKIKYPDESLKEILEETYGVILYQEQVMKIASEMAKYSLGEADQLR 707

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            RA+GKKI   +++ +E+F+  A +N +S+  A  I+ L+ KF  YGFNKSH+AAYA+I Y
Sbjct: 708  RAIGKKIPAIIEENREKFVKKAQENNVSREKADRIYNLIDKFGGYGFNKSHSAAYALIVY 767

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             TA+ K +YP+EF AA MT EM N+E++  F  +AR   I+I+ P VN    DFKV ++ 
Sbjct: 768  WTAYFKANYPLEFFAAIMTTEMYNIERLSLFINEARGKGIEILVPDVNLSDYDFKVEESG 827

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I + L AIKGVG    R IME      F S EDF  R+  + LN++ LESL+ +G+LD  
Sbjct: 828  IRFGLVAIKGVGGNFVREIMEERESGIFVSYEDFVYRMKQRGLNKKQLESLILSGSLDNL 887

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              +R +  +S++ + +++Q   ++  +    +F  +     D   ++K    + S+  +N
Sbjct: 888  DGNRKEKTESINKVMEWSQKKYESEEDLQMILFGGKSKKIGD-FQMDKTEEYSQSILLKN 946

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-ATIRGN--NIRLAAMVVSKQQKKTR- 1010
            E+  LG Y S HPLD  K     +      E+      G    IR+  ++ +  +  T+ 
Sbjct: 947  EREYLGIYVSSHPLDEKKDYFEMIEHTKISETEVRNKSGKFDKIRIMGVIKNLNKIVTKL 1006

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
             G  +      +     E   FP
Sbjct: 1007 SGEPMAKFELEDATGAMEVICFP 1029


>gi|254776764|ref|ZP_05218280.1| error-prone DNA polymerase [Mycobacterium avium subsp. avium ATCC
            25291]
          Length = 1093

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 278/1038 (26%), Positives = 478/1038 (46%), Gaps = 60/1038 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S  +  L  HS++S L+G  +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 54   SSVPYAELHAHSAFSFLDGVSTPEEMVEEAARLDLRALALTDHDGLYGAVRFAEAAAELD 113

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ + G +L +        + + + P P  P +++L   AEGY+RL   ++  +L    K
Sbjct: 114  VRTVFGAELSLGP------SARTEAPDPPGPHLLVLARGAEGYRRLSRQLAVAHLAGGEK 167

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
               R  L  L E       +LTG   G + +A        A + L      FG  R+ + 
Sbjct: 168  GKPRYDLDALTEAAGGHWHILTGCRKGHVRQALSDGGPDAAARALADLVDRFGAARVSIE 227

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L RH    D  R + +  LA    + +VAT  + F           + A+     +    
Sbjct: 228  LTRHGQPLDDERNAALAALAPRFGVGVVATTGAHFAGPSRRRLAMAVGAIRARESLDSAA 287

Query: 245  RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     +L++  EM  +F+  PEA+    E+  +C+F L + AP LP F   +    
Sbjct: 288  GWLAPLGGSHLRSGEEMARLFAWCPEAVTAAAELGEQCAFGLALIAPRLPPFDVPDG--- 344

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E++ LR   + G   R           A     +++ EL VIA+++F GYFL+V D 
Sbjct: 345  -HTEDSWLRQLTMTGARDRYG-----SPERAPRAYAQIEHELKVIAQLQFPGYFLVVHDI 398

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
             ++ ++NNI    GRGS A S   YAL +T +DP+   LLFERFL+P R   PD D+D  
Sbjct: 399  ARFCRENNIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDMDIE 457

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+R++VI+YV ++YG +  AQ+    + + K A+RD+ RAL     Q D   K I +  
Sbjct: 458  SDQREKVIQYVYDRYGRDYAAQVANVITYRGKIAVRDMARALGYSQGQQDAWSKQISSWS 517

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                    +AD               ++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 518  G-------LADSPDVEGI------PPQVIDLANQVRNLPRHLGIHSGGMVICDRPIADVC 564

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+      +  V Q++       GL+KFD LGL  L+ L  ++D +A+   ++VDLS + 
Sbjct: 565  PVEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGIEVDLSRLD 624

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660
              +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  
Sbjct: 625  LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 684

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R+NG + ++  HP ++P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAM  K
Sbjct: 685  YIRRRNGVDPVLYDHPSMEPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 744

Query: 720  KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            +  E M + + RF  G    +G    +    +E L  FA++GF +SHA ++A + + ++W
Sbjct: 745  RSTERMRRLRGRFYDGMRALHGAPDEVIDRTYEKLEAFANFGFPESHALSFASLVFYSSW 804

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836
             K H+P  F AA +  +       +    DAR+  + +  P VN       +      + 
Sbjct: 805  FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLAHATLENAGTEVR 864

Query: 837  YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L A++ +G   A  +++    + PF SL D  +R+    L+    E+L  AGA  CFG
Sbjct: 865  LGLGAVRHIGDDLAEKLVQERKANGPFASLLDLTARLH---LSVPQTEALATAGAFGCFG 921

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             SR +                   T + + +      +      +      +       +
Sbjct: 922  MSRRE----------ALWAAGAAATQRPDRLPGVGSSS-----HIPALPGMSELELAAAD 966

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     +P    +  L  MG+       +   G+ + +A  V  +Q+  T +G  +
Sbjct: 967  VWATGISPDSYPTQFLRDDLDAMGVVPAARLGSVPDGDRVLIAGAVTHRQRPGTAQG--V 1024

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             ++   +          P
Sbjct: 1025 TFLNLEDETGMVNVLCTP 1042


>gi|161378129|ref|NP_745263.2| error-prone DNA polymerase [Pseudomonas putida KT2440]
          Length = 1026

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 283/1037 (27%), Positives = 456/1037 (43%), Gaps = 78/1037 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P +  L   S++S   GA S + +  +       A+AITD   L   +   Q A    
Sbjct: 2    NTPGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKVHQ 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ I+G ++ +                   P +VLLV    GYQ L  L++R     + K
Sbjct: 62   LRLIVGSEVQLCDG----------------PKLVLLVENLTGYQNLCALITRARRRAE-K 104

Query: 127  QSVRICLSWLQEIGTEGLIMLT-GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
             + ++    L  +  +GL+ L     SG                     + +F +RL++ 
Sbjct: 105  GAYQLFRDDLL-LHHQGLLALWVAADSGD-------------TATGAWLRSVFAERLWLA 150

Query: 186  LQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +  HRG D   R  ++  LA    +  VA  +            D + A+     VS+  
Sbjct: 151  VHLHRGSDDAVRLQRLRALAADVGIRAVACGDVHMHVRGRRALQDCMTAIRQHCQVSEAG 210

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R     +     RS+         + L  T+ IARRC F L       PR +  E     
Sbjct: 211  RFLF-ANGERHLRSQAQLAELYPLDLLAETLVIARRCQFDLSELNYQYPRELVPEG---- 265

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + LR     G+ +R   G       +   R  L  EL +I  + +  YFL V D +
Sbjct: 266  HTPASWLRELCEQGMPLRWPDG------PSGKVRDVLAKELGLIEELGYESYFLTVHDIV 319

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+   I    GRGS A SV  + L IT++DP++  LLFERFL+ +R   PD D+DF  
Sbjct: 320  AFARSQRIL-CQGRGSAANSVVCFVLGITELDPMKHHLLFERFLSRERNEPPDIDVDFEH 378

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVI+YV  +YG  R A      +  A  A+RDV RAL +P  QVD L K       
Sbjct: 379  DRREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARALGLPADQVDALAKCCGRWSD 438

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 Q +A+           PS+ R+L ++ +L G  RH S H  G VI  +PL QLVP
Sbjct: 439  RIPDDQRLAE----AGFEAGSPSLRRVLVLAGELIGFPRHLSQHPGGFVISQQPLDQLVP 494

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPF 603
            +      +  V Q++   ++  GL+K D L L  L+ L++        RG  + L+ IP 
Sbjct: 495  VENAAMPERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDQLQHHRGRHLTLATIPS 554

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662
            +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+  
Sbjct: 555  EDPATYAMISRAETMGVFQIESRAQMAMLPRLRPQKFYDLVIEVAIVRPGPIQGDMVHPY 614

Query: 663  -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R+  +E +    P +  + + T GV ++QEQVM++A + + Y+  EAD LRR+M    
Sbjct: 615  LRRRLKQEPVTYPSPQLKEVFERTLGVPLFQEQVMELAMVAADYTPGEADQLRRSMAAWK 674

Query: 722  KEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            +    +  +ER + G  +NG +   A  IFE +  F  YGF +SHAA++A++ Y ++W+K
Sbjct: 675  RHGGLEPHRERLVQGMLRNGYTLAFAERIFEQIKGFGSYGFPESHAASFALLCYASSWLK 734

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RI 835
             H P  F  A +           +  Q+AR+  I++ P  V     D  +  +      I
Sbjct: 735  CHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSDWDCTLEPDAEGTLAI 794

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L  ++G+    A+ + +A + +P+ ++ED C R     L+ R    L   GAL    
Sbjct: 795  RMGLRLVRGLAEADAKRVQQARSQRPWRNVEDLCLRA---GLDARARARLADGGALRALA 851

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R Q    +  +                 +FA  +    + + L    V         +
Sbjct: 852  SDRHQARWQVAAV------------QPQLPLFADVQALPEEPVQLP---VPTVGEDLMAD 896

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
             + LG     HPL + +  LR +G +   E      G+NI +A +VV +Q+ +T  G  +
Sbjct: 897  YQTLGTTLGPHPLALLRARLRALGCRSSSELQGVEHGDNIAVAGLVVGRQRPQTASG--V 954

Query: 1016 GWVTFSEPAKEYEANFF 1032
             +VT  +         +
Sbjct: 955  TFVTLEDEHGMVNVVVW 971


>gi|71151833|sp|Q88I82|DNAE2_PSEPK RecName: Full=Error-prone DNA polymerase
 gi|24984742|gb|AAN68727.1|AE016504_10 DNA polymerase III, alpha subunit, putative [Pseudomonas putida
            KT2440]
          Length = 1033

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 283/1037 (27%), Positives = 456/1037 (43%), Gaps = 78/1037 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P +  L   S++S   GA S + +  +       A+AITD   L   +   Q A    
Sbjct: 9    NTPGYAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKVHQ 68

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ I+G ++ +                   P +VLLV    GYQ L  L++R     + K
Sbjct: 69   LRLIVGSEVQLCDG----------------PKLVLLVENLTGYQNLCALITRARRRAE-K 111

Query: 127  QSVRICLSWLQEIGTEGLIMLT-GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
             + ++    L  +  +GL+ L     SG                     + +F +RL++ 
Sbjct: 112  GAYQLFRDDLL-LHHQGLLALWVAADSGD-------------TATGAWLRSVFAERLWLA 157

Query: 186  LQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +  HRG D   R  ++  LA    +  VA  +            D + A+     VS+  
Sbjct: 158  VHLHRGSDDAVRLQRLRALAADVGIRAVACGDVHMHVRGRRALQDCMTAIRQHCQVSEAG 217

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R     +     RS+         + L  T+ IARRC F L       PR +  E     
Sbjct: 218  RFLF-ANGERHLRSQAQLAELYPLDLLAETLVIARRCQFDLSELNYQYPRELVPEG---- 272

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + LR     G+ +R   G       +   R  L  EL +I  + +  YFL V D +
Sbjct: 273  HTPASWLRELCEQGMPLRWPDG------PSGKVRDVLAKELGLIEELGYESYFLTVHDIV 326

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+   I    GRGS A SV  + L IT++DP++  LLFERFL+ +R   PD D+DF  
Sbjct: 327  AFARSQRIL-CQGRGSAANSVVCFVLGITELDPMKHHLLFERFLSRERNEPPDIDVDFEH 385

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EVI+YV  +YG  R A      +  A  A+RDV RAL +P  QVD L K       
Sbjct: 386  DRREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARALGLPADQVDALAKCCGRWSD 445

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 Q +A+           PS+ R+L ++ +L G  RH S H  G VI  +PL QLVP
Sbjct: 446  RIPDDQRLAE----AGFEAGSPSLRRVLVLAGELIGFPRHLSQHPGGFVISQQPLDQLVP 501

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPF 603
            +      +  V Q++   ++  GL+K D L L  L+ L++        RG  + L+ IP 
Sbjct: 502  VENAAMPERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDQLQHHRGRHLTLATIPS 561

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662
            +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+  
Sbjct: 562  EDPATYAMISRAETMGVFQIESRAQMAMLPRLRPQKFYDLVIEVAIVRPGPIQGDMVHPY 621

Query: 663  -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R+  +E +    P +  + + T GV ++QEQVM++A + + Y+  EAD LRR+M    
Sbjct: 622  LRRRLKQEPVTYPSPQLKEVFERTLGVPLFQEQVMELAMVAADYTPGEADQLRRSMAAWK 681

Query: 722  KEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            +    +  +ER + G  +NG +   A  IFE +  F  YGF +SHAA++A++ Y ++W+K
Sbjct: 682  RHGGLEPHRERLVQGMLRNGYTLAFAERIFEQIKGFGSYGFPESHAASFALLCYASSWLK 741

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RI 835
             H P  F  A +           +  Q+AR+  I++ P  V     D  +  +      I
Sbjct: 742  CHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSDWDCTLEPDAEGTLAI 801

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L  ++G+    A+ + +A + +P+ ++ED C R     L+ R    L   GAL    
Sbjct: 802  RMGLRLVRGLAEADAKRVQQARSQRPWRNVEDLCLRA---GLDARARARLADGGALRALA 858

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R Q    +  +                 +FA  +    + + L    V         +
Sbjct: 859  SDRHQARWQVAAV------------QPQLPLFADVQALPEEPVQLP---VPTVGEDLMAD 903

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
             + LG     HPL + +  LR +G +   E      G+NI +A +VV +Q+ +T  G  +
Sbjct: 904  YQTLGTTLGPHPLALLRARLRALGCRSSSELQGVEHGDNIAVAGLVVGRQRPQTASG--V 961

Query: 1016 GWVTFSEPAKEYEANFF 1032
             +VT  +         +
Sbjct: 962  TFVTLEDEHGMVNVVVW 978


>gi|300767496|ref|ZP_07077408.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            plantarum subsp. plantarum ATCC 14917]
 gi|300495315|gb|EFK30471.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            plantarum subsp. plantarum ATCC 14917]
          Length = 1116

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 325/1026 (31%), Positives = 522/1026 (50%), Gaps = 39/1026 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V LQV S++SLL    +++ ++         A+A+TD + ++  ++F      A I PI
Sbjct: 4    YVPLQVLSTFSLLHSTSTVSELVQTAKQQGYSALALTDVDIMYGIVDFYNACRQAEITPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  L++           G+       S+V+L     GYQ L+ L +          S+ 
Sbjct: 64   LGITLNL----------LGRELTAQTFSLVVLAKDQAGYQNLMRLSTMKQTATDAGLSLT 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
              L +L       L++LT      +      N+++ A   + T +++     LY+ +   
Sbjct: 114  AVLPYL-----NHLMVLTPAKDSELAALLLQNTAERAADWITTLRQVVDSASLYLGISLD 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
            +       + +   A  H+LP+VA +   ++  +DY A  VL A+     + Q +  +  
Sbjct: 169  QAP--ALRTTMTAFAQQHQLPVVALDPVDYVQAKDYFAVSVLRAIDRGQQIEQPESLQGI 226

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               +    +  V         L   V      +   QV        + +      +    
Sbjct: 227  EGSHYLRPANTV-TADYEQLGLTTAVAATAEIAAQCQVELQFQQPQLPQFPTPAGQPANV 285

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR    AGL  RLA  AI      Q Y+ RLD EL VI +M F  YFLIV D + +A +
Sbjct: 286  YLRQLCTAGLTERLA--AITPSVDQQAYQDRLDHELTVIDQMGFDDYFLIVWDVMNFAHE 343

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLN  R +MPD D+D   +RR++
Sbjct: 344  AQITTGPGRGSAAGSLVAYALNITDVDPLKYDLLFERFLNAKRANMPDIDLDIPDNRREQ 403

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V+ YV +KYGH+RVAQIITFG+L AK ALRDVGR   +   ++      IPN     +  
Sbjct: 404  VLNYVHDKYGHDRVAQIITFGTLAAKQALRDVGRVFGLSTYEMSDWSAAIPNQLHITLDQ 463

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                   R +           L E +++LEGL RH STHAAG+V+  +PL Q+VP+    
Sbjct: 464  A-YQGSQRLQNLVADSSKNKLLFETARRLEGLPRHYSTHAAGVVLSQKPLIQIVPLQ-AG 521

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHET 608
               + +TQ+    +E  GL+K DFLGL+ L+L+  +L +   Q G  + ++ I  +D  T
Sbjct: 522  SETMMMTQYTKDTVEAVGLLKMDFLGLRNLSLMASALHYVQRQTGKPLAITKIDLNDPAT 581

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T G+FQ ES+G+R  L  + PD  E + A+ +LYRPGP++NI  +  RK G+
Sbjct: 582  LKLFQAGDTTGVFQFESAGIRNVLRRLHPDNFELVAAVNALYRPGPMENIDHFIARKQGQ 641

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E +      + P+L  T G+++YQEQVMQ+A ++ G++L EAD+LRRAM KK +  +DK 
Sbjct: 642  EPVSYPAEQLAPILGPTYGILVYQEQVMQVAAVMGGFTLGEADLLRRAMSKKKRAVIDKM 701

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +++FI+GA +NG S+ +A  +++ + +FA+YGFN+SHA AY+ ++++ A++K HY   F 
Sbjct: 702  RQQFIAGAQQNGYSEAVATQVYQYIEQFANYGFNRSHAIAYSKMAFELAYLKVHYSGAFF 761

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             + M   + N  K+K++  +ARQ  + I+PP +N     F      I + L++IKG+   
Sbjct: 762  TSLMNSVLGNGTKLKQYLAEARQHQVAIIPPDINRSGQYFDWNGQAIVFGLSSIKGLRRD 821

Query: 849  TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
                +++   A+ PF SL+ F  R+D+K L   ++++L++AGA D FG +R +LL S+  
Sbjct: 822  FIASVLDERQANGPFKSLQQFMQRIDAKWLKADLMDALIYAGAFDHFGLNRAELLTSVPE 881

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +   A            ++F            ++K    +   R   E   LG Y SGHP
Sbjct: 882  LMSSA-----ELAGGSMSLFESL------APKIKKQPELSLGERLAKEAEYLGVYVSGHP 930

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            ++ Y   L +                  ++   +   +  +T++G  + + T S+ + E 
Sbjct: 931  VETY-DWLAQQRHTQL--VSTLTSEQPAQILVYITKVRTIRTKRGQPMAFATGSDLSGEI 987

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 988  DLTIFP 993


>gi|221635931|ref|YP_002523807.1| error-prone DNA polymerase [Thermomicrobium roseum DSM 5159]
 gi|221157507|gb|ACM06625.1| error-prone DNA polymerase [Thermomicrobium roseum DSM 5159]
          Length = 1059

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 306/1052 (29%), Positives = 490/1052 (46%), Gaps = 84/1052 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS +SLL+       ++ + AA     +A+TD + L   + F + A   GI PI
Sbjct: 5    YAELHAHSCFSLLDAPCHPEQLVQQAAALGYEHLALTDHDALHGVVRFVRAAERVGIHPI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL--------- 121
            +G ++ ++                    + LL     GY  L  L+S   L         
Sbjct: 65   VGAEITMEDGS----------------HLALLAEDERGYATLARLLSAARLGWPTPEGPG 108

Query: 122  -------LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
                       +++V +   WL +   +GLI+LTG   GP+ RA    +   A  R    
Sbjct: 109  SEDTALAGSPARRAVALPWHWLVD-HHDGLIVLTGCRQGPLARALTEGNRADALARAHWL 167

Query: 175  KKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
             ++FG +R +V LQ H    DR R +++  LA T  LPLVAT N  +L    +   DVL+
Sbjct: 168  ARVFGPERCFVELQDHGERGDRERCTELAALARTAGLPLVATGNVHYLDAAGWRLQDVLV 227

Query: 233  AVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
             +     +      R  +  + L   + M   F   P+A+ NT  IA RC   L      
Sbjct: 228  CIREGITIETPHPARKTSAAYRLVAPASMAHRFRSFPDAVANTRRIAERCQVSLDFRQVR 287

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             P           +     LR +A  G +          G  ++   ++L+ EL VI R+
Sbjct: 288  FPP--LPHLVPPGETPMQVLRRQAYEGAQR-------RYGQLSEPVVRQLEHELGVIERL 338

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
              + +FLI AD            G GRGS A S+ AY L IT +DPL   LLFERFLN +
Sbjct: 339  GVAEFFLICADLAN------RFRGRGRGSAADSLVAYCLGITQVDPLAHRLLFERFLNEE 392

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R SMPD DIDF  + R+  I YV   YG E  A +  + + QA++A+RD+GR L +P   
Sbjct: 393  RPSMPDIDIDFGLEDRERAIAYVYATYGVEHAAMVCNYVTFQARSAIRDLGRVLGLPPEI 452

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            +D L K         + + A A   R          +  L+ +  +LE + RH S H  G
Sbjct: 453  IDELAKSQGR-LGEALPVLARALAPRLSP--DLRRRLAWLVRLVPQLEDIPRHLSVHVGG 509

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +VI  RP+ +   +         V  ++ + IE+AGLIK D L ++ ++++ ++++ + Q
Sbjct: 510  MVIAGRPVVEFTTVEPSRMPGRVVLGWDKRDIEEAGLIKTDVLCVRAISVVHQAIELIEQ 569

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
              G+++DL  +P DD   Y LL T  T+G +Q+ES   +Q+L    P+  ED+IA V++ 
Sbjct: 570  ASGLRIDLEQLPLDDPAVYRLLQTADTIGTYQVESRAQQQSLPRTHPERFEDLIAQVAII 629

Query: 651  RPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGPI   +V+   +  +  E +  +HP ++P+L+ET GVI+YQEQV+++A  ++G +  
Sbjct: 630  RPGPIQGGMVHPYIRRRRGLEPVRYLHPKLEPILRETLGVILYQEQVLEVAMAIAGMTAG 689

Query: 709  EADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            +AD  RRAM  K+ +  M+  +  F++GA +NG+++ +A  IFE +A FA+YGF KSHAA
Sbjct: 690  QADAFRRAMGSKRSRAAMEALRGDFLAGAERNGVARPVAERIFEQIAAFAEYGFCKSHAA 749

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            A A  +Y+T W++ HYP   L A +  +       +    DA +  I ++PP V      
Sbjct: 750  ALARTAYETLWLRAHYPAALLCALLNNQPMGFYAPEVLIWDALRRGIHVLPPDVLASAAR 809

Query: 828  FKVGD----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
              +        +   L A++GVG   A  I+ A +++PF    D   R    +L    +E
Sbjct: 810  STLTGDPVHGPVRLGLTAVRGVGRAAAERIVAARSEEPFRDTADVVRRA---QLTPEQVE 866

Query: 884  SLVFAGALDCFGYS--RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            +LV  GA D       R +LL  L         V   R  +   +           + L 
Sbjct: 867  ALVLVGAFDRLAPDRSRRELLWDL-------LAVATERPERPRLL-----DVSEPAVRLP 914

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            +    ++  +   +  +LGF    H +++Y+   R + +           G   R+A +V
Sbjct: 915  EL---DTVEQTFLDYAILGFCLDRHLMELYRAQRRILRVTPAARLRTLPPGATARVAGLV 971

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V +Q   T +G  + ++T  +          P
Sbjct: 972  VCRQAPPTARG--VLFLTLEDETGLVNVIVPP 1001


>gi|296161200|ref|ZP_06844009.1| DNA polymerase III, alpha subunit [Burkholderia sp. Ch1-1]
 gi|295888541|gb|EFG68350.1| DNA polymerase III, alpha subunit [Burkholderia sp. Ch1-1]
          Length = 1049

 Score =  609 bits (1569), Expect = e-171,   Method: Composition-based stats.
 Identities = 267/1046 (25%), Positives = 447/1046 (42%), Gaps = 64/1046 (6%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +       P++  L   S+++ L GA     + ++       A+A+TD  +L   +    
Sbjct: 1    MDSTFSTLPAYAELFCFSNFTFLHGASHAEELAERAEQLGYAALAVTDECSLAGVVRAHV 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  A +  I+G    +   D                 ++LL    EGY  L EL++   
Sbjct: 61   AAKEAKLPFIVGSYFRLVNADG-----------SPAFGLILLARNREGYGNLSELITLAR 109

Query: 121  LLDQGKQSVRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
                 K   R+    L     E   L  L    +  +    F     V   ++      F
Sbjct: 110  TR-APKGEYRLTPQDLSRPDRENRHLRGLPDCLAILVPD--FPAKEDVLAAQVEWLDDTF 166

Query: 179  GDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
              R +V L  H R  D      V  +A   ++P+VA  N +          D + A+   
Sbjct: 167  TGRAWVGLVLHQRAMDDIHRGSVEFVARNQDVPVVALGNVVMHVRSRKPLQDTMTAIRVR 226

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
              V  +    +T +     RS +        +AL  TV+IA RC+F L       P  + 
Sbjct: 227  RPV-HECGYDLTQNAEQHLRSRLRLANLYPDDALAATVDIASRCAFSLDELRYEYPDELV 285

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                         LR +   G + R   G           +++++ EL +IA +++  YF
Sbjct: 286  PTGF----TPTAYLRQETYIGAQRRFPSG------IPHKVQEQIEHELELIADLQYEPYF 335

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V D +++A+  +I    GRGS A S   Y L +T++DP R ++LFERF++ +R   PD
Sbjct: 336  LTVYDIVRFARSQSIL-CQGRGSAANSAVCYCLGVTEVDPARGNMLFERFISKERGEPPD 394

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF   RR+EVI+Y+  KYG +R A      + + + ALR+ G+AL +    VD + K
Sbjct: 395  IDVDFEHQRREEVIQYIYRKYGRDRAAIAAAVSTYRPRGALRETGKALGVDPQIVDVVAK 454

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                       L    +           P +    +++ +L G  RH S H+ G VI   
Sbjct: 455  SHHWFDTSQDLLARFRES----GLDPEKPLIQAWAKLASQLLGFPRHLSQHSGGFVISRG 510

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKV 596
             L++LVP+      D  V +++   +E  GL+K D L L  L+ ++++LD    QRG + 
Sbjct: 511  KLTRLVPVENAAMEDRSVIEWDKDDLEALGLLKIDVLALGMLSAIRRALDIVSEQRGERF 570

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            ++  IP +D +TY +++   T+G+FQ+ES      L  MQP    D++  V++ RPGPI 
Sbjct: 571  EMQDIPAEDPQTYEMISAADTVGVFQIESRAQMSMLPRMQPRTFYDLVIEVAIVRPGPIQ 630

Query: 657  NIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
               V+   +  +  E +      +   L  T GV I+QEQVMQ+A L +G++  EAD LR
Sbjct: 631  GGAVHPYLQRRQGFEPVSYPSDALKTALGRTLGVPIFQEQVMQVAILAAGFTAGEADQLR 690

Query: 715  RAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RAM     K  ++K  +R + G  + G +   A +IFE +  F +YGF +SHAA++A++ 
Sbjct: 691  RAMAAWKRKGGLEKYYDRIVHGMQERGYTLAFAESIFEQIKGFGEYGFPESHAASFALLV 750

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD- 832
            Y ++W+K H P  FLAA +  +        +  QDA++  ++++P  V     D  + + 
Sbjct: 751  YASSWLKCHEPEAFLAAMLNSQPMGFYSPSQLVQDAQRHGVKVLPVDVTISGWDSALVNL 810

Query: 833  -----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +   ++ ++G+    A  I  A A +PF+S+ D   R    +L+R+ L  L  
Sbjct: 811  QGAGRPAVRLGMSLLRGMKDGAAERIENARAVRPFESVNDLARRA---QLDRKDLHVLAD 867

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            A AL     +R + L                              T + +          
Sbjct: 868  ANALTSLAGNRREALWQSVAAVPDR----------------DMLATAAVQDETPALGAPT 911

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             +     + R +G     HPL++ +P L    +           G   R   +V  +Q+ 
Sbjct: 912  EANDIVADYRSVGLTLGRHPLELLRPQLLAKRLMPASTLRTYRDGRLARGCGLVTVRQRP 971

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T KG  + +VT  +         +P
Sbjct: 972  GTAKG--VMFVTLEDETGNVNVIVWP 995


>gi|70731058|ref|YP_260799.1| error-prone DNA polymerase [Pseudomonas fluorescens Pf-5]
 gi|78099245|sp|Q4KAD4|DNAE2_PSEF5 RecName: Full=Error-prone DNA polymerase
 gi|68345357|gb|AAY92963.1| DNA polymerase III, alpha subunit, putative [Pseudomonas fluorescens
            Pf-5]
          Length = 1034

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 282/1044 (27%), Positives = 460/1044 (44%), Gaps = 86/1044 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
             ++  L   S++S   GA S   +  +  A    A+AITD   L   +   Q +   G++
Sbjct: 2    SAYAELHCLSNFSFQRGASSAAELFQRAKALGYQALAITDECTLAGIVRAWQASRDTGLK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G ++ ++                  P +VLLV    GYQ L  L++R     + K S
Sbjct: 62   LIVGSEMQVEDG----------------PRLVLLVEDLAGYQGLCRLITRARRRAE-KGS 104

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+      E    GL+ L    +G                     +++F  RL++ L+ 
Sbjct: 105  YRLLREDFAEPLP-GLLALWLTGAGE---PLAQGR---------WLQQVFPQRLWLALEL 151

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    D     Q + LA    LP VA  +            D + A+ H   V++  + R
Sbjct: 152  HCGQDDARHLQQQLALARQLGLPAVACGDVHMHVRGRRALQDTMTAIRHHLPVAEAGQ-R 210

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +  +     R   V         L+ ++ IA RC+F L       PR +  E  D     
Sbjct: 211  LFANGERHLRPVEVLQGLYPQALLDESLAIAGRCAFDLGQLRYQYPRELVPEGHDAG--- 267

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR     G+  R   GA A      +  +++D EL +I  + +  YFL V D + +A
Sbjct: 268  -SWLRVLTQRGIVRRWPTGARA------EVLKQIDKELTLICDLGYESYFLTVHDIVDFA 320

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++ +I    GRGS A SV  +AL IT+IDP R +LLFERFL+ +R   PD D+DF  +RR
Sbjct: 321  RRQHIL-CQGRGSAANSVVCFALGITEIDPDRSTLLFERFLSRERNEPPDIDVDFEHERR 379

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++Y+  +YG  R A      +     A+RDV +AL +P  QV+ L     +    P 
Sbjct: 380  EEVLQYLFQRYGRHRAALTAVVSTYHGAGAVRDVAKALGLPPDQVNALADCCGHWSDTPP 439

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            S++ + +           P + R+L ++ +L G  RH S H  G VI ++PL  LVP+  
Sbjct: 440  SVERLQE----AGFDPQSPVLRRVLSLTGQLIGFPRHLSQHPGGFVISEQPLDHLVPVEN 495

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
               ++  V Q++   ++  GL+K D L L  L+ +++  D +   RG +  L+ IP +D 
Sbjct: 496  ATMAERTVIQWDKDDLDMVGLLKVDILALGMLSAIRRCFDLIHGYRGQRYSLASIPPEDP 555

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 556  ATYEMIGRADTIGVFQIESRAQMSMLPRLKPQNFYDLVIEVAIVRPGPIQGGMVHPYLRR 615

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +N +E      P ++ +LK T GV ++QEQVMQIA + + Y+  EAD LRR+M    +  
Sbjct: 616  RNRQEPETYPSPELEGVLKRTLGVPLFQEQVMQIAIVAADYTPGEADQLRRSMAAWKRHG 675

Query: 725  M-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
              +  +ER   G ++NG S   A  IFE +  F  YGF +SHAA++A+++Y + W+K H 
Sbjct: 676  GLEPHRERLRRGMNRNGYSDEFATQIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHE 735

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------------ 831
            P  F  A +           +  QDAR+  +Q++   V     D  +             
Sbjct: 736  PAAFACALINSWPMGFYSPDQILQDARRHGLQVLAVDVGASDWDCSLEPIPVQPARAGNG 795

Query: 832  ---DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  +   L  IKG     AR I  A   + F  + D   R    +L+ R  E L  A
Sbjct: 796  PPGQPALRLGLRMIKGFREDDARRIERARRQRAFVDIADLGERA---RLDVRAQELLADA 852

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GAL      R +    +  +++               +FA         + L +    + 
Sbjct: 853  GALQALAGDRYRARWEVAGVER------------QLGLFAGLPSQEEAPVALPR---PSV 897

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
                + +   LG     HPL + +P L     +   + +A   G ++ +A +V  +Q+  
Sbjct: 898  GEDLQADYHSLGTTLGPHPLALLRPQLAARRCRSSRDLLAVEHGRSVSVAGLVTGRQRPG 957

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T  G  + +VT  +         +
Sbjct: 958  TASG--VTFVTLEDEFGNVNVVVW 979


>gi|229591045|ref|YP_002873164.1| error-prone DNA polymerase [Pseudomonas fluorescens SBW25]
 gi|229362911|emb|CAY49821.1| putative DNA polymerase III alpha subunit [Pseudomonas fluorescens
            SBW25]
          Length = 1030

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 286/1033 (27%), Positives = 453/1033 (43%), Gaps = 76/1033 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  L   S++S   GA S   + ++       A+AITD   L   +   Q A A  +  
Sbjct: 9    SYAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLAGIVRAWQAAKAVELPL 68

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ I+                  P +VLLV    GYQ L  L++      + K S 
Sbjct: 69   IIGSEVRIENG----------------PKLVLLVEDLSGYQHLCRLITLARRRAE-KGSY 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+ L    +    GL+ L                       +   ++ F +RL++ +  H
Sbjct: 112  RLLLEDFDQPLP-GLLALWVAEDSDTQ------------ASIQWLRRTFAERLWLAVHLH 158

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                D +R  Q + LA +  +P VA  +    +       D + A+ H   V++    R+
Sbjct: 159  CGQDDAHRLEQRLNLAASLRIPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAG-TRL 217

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             P+     RS            L+ T  IARRC+F L       PR +  E  D     E
Sbjct: 218  HPNGERHLRSLDALAALYPHALLDETQAIARRCTFDLSQLRYHYPRELVPEGHD----AE 273

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR    AG+  R  QG  A         Q++  EL +I+ + +  YFL V D +++A+
Sbjct: 274  SWLRAVTEAGIAQRWPQGVDAHT------LQQIHKELALISELGYESYFLTVHDIVRFAR 327

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              +I    GRGS A S   +AL IT+IDP   S+LFERFL+ +R   PD D+DF  +RR+
Sbjct: 328  SRSIL-CQGRGSAANSAVCFALGITEIDPSLTSMLFERFLSKERNEPPDIDVDFEHERRE 386

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EV++YV  +YG  R A      S  A  A+RDV +AL +P  QV+ L             
Sbjct: 387  EVLQYVFQRYGRTRAALTAVVSSYHAAGAVRDVAKALGLPPDQVNALADCCGRWSDDAPP 446

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            L+ + +           P + R+L ++Q+L G  RH S H  G VI + PL  LVP+   
Sbjct: 447  LERLRE----GGFDPQSPILRRVLTLTQQLIGFPRHLSQHPGGFVISEYPLDTLVPVENA 502

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHE 607
              ++  + Q++   ++  GL+K D L L  L+ +++  D     R     L+ +P +D  
Sbjct: 503  AMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRNRDFSLASLPKEDPA 562

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665
            TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R+
Sbjct: 563  TYAMISKADTIGVFQIESRAQMSMLPRLRPQTFYDLVIEVAIVRPGPIQGGMVHPYLRRR 622

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N +E+     P ++ +L+ T G+ ++QEQVMQIA + + Y   EAD LRR+M    +   
Sbjct: 623  NKEEETTYPSPELEVVLQRTLGIPLFQEQVMQIAMVAADYGPGEADQLRRSMAAWKRHGG 682

Query: 726  -DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
             +  +ER  +G  KNG S+  A  IFE +  F  YGF +SHAA++A+++Y + W+K H P
Sbjct: 683  LEPHQERLRTGMLKNGYSEEFAAQIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEP 742

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYYSL 839
              F  A +           +  QDAR+  +QI P  V     D  +         I   L
Sbjct: 743  AAFACALINSWPMGFYSPDQILQDARRHRLQIRPVDVQASDWDCSLEPIDGAQPAIRMGL 802

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
              I G+     R I  A     F  + D  +R     L+ R    L  AGAL     +R 
Sbjct: 803  RMIAGLREEEGRRIETARERGVFSDIADLDARA---GLDARTQALLADAGALRALADNRH 859

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            +    +  + K               +FA         + L            + +   +
Sbjct: 860  KARWEVAGVHK------------QLGLFAGLPSPDEAVVALP---APTVGEDLQADYATV 904

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G     HPL + +  LRK   +  +E +    G N+ +A +V  +Q+  T  G  + +VT
Sbjct: 905  GTTLGPHPLALLRTELRKRRCRSSQELMLVEHGRNVSIAGLVTGRQRPGTASG--VTFVT 962

Query: 1020 FSEPAKEYEANFF 1032
              +         +
Sbjct: 963  LEDEFGNLNVVVW 975


>gi|228982552|ref|ZP_04142811.1| hypothetical protein bthur0002_56850 [Bacillus thuringiensis Bt407]
 gi|228776735|gb|EEM25043.1| hypothetical protein bthur0002_56850 [Bacillus thuringiensis Bt407]
          Length = 1237

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 331/1068 (30%), Positives = 534/1068 (50%), Gaps = 71/1068 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +V L  H+ YSLL+GA  ++ ++ K       A AITD   ++  L+F +K   A  +P
Sbjct: 73   RYVSLHGHTGYSLLDGATKIHEMVAKT-EW---ASAITDHGVMYGTLDFYKKMKKANKKP 128

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +  I+  D  K               +LL   A GY+ L++L S  +  +      
Sbjct: 129  ILGFEAYIETLDGKKEGK----------HQLLLAINATGYRNLVKLTSMGF--ENKYYKP 176

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
             + L WL++  +EG++  +    G + +A       +A K +     +FG +  Y+ +QR
Sbjct: 177  HVKLEWLEKY-SEGVVSTSSCLGGLVPQAIIKGDMDLARKTVQKMIDIFGKENYYIEIQR 235

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP- 246
            H    +      ++QLA    L  +AT++S +   ED   H++L+ +   T +   +R  
Sbjct: 236  HGCEEEEVVNPALLQLAEEFGLKAIATSDSHYTEIEDASVHEILLCIGTKTTMDDPNRMV 295

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +++    EM  +F D+PE L+NT+++A R +  +Q+    LP F   E     + 
Sbjct: 296  FPGSGYHIHTSEEMEDLFWDMPELLDNTLDLAERINIDIQLGEIYLPEFPLPEGF---ES 352

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            + +   + A  G   R       K + +++YR+RL FE+  I  M F GYF+IV DFI++
Sbjct: 353  QADYFEHLAWEGFAKRFKG---QKEFKSKEYRERLTFEIETIKTMGFPGYFVIVWDFIRF 409

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+  I VGPGRGS  GS+ AYAL ITDIDP+ + L+FERFLNPDR+SMPD DIDF   R
Sbjct: 410  AKERGILVGPGRGSACGSLVAYALDITDIDPIPYGLIFERFLNPDRISMPDIDIDFEDTR 469

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI YV+  YG E V++IITFG+L AK ++RDV R L  P    + +   IP  P   
Sbjct: 470  REEVIDYVKELYGEEAVSRIITFGTLAAKVSVRDVARVLDKPLG--NMIANAIPEKPGMT 527

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM- 545
            +  +A+ +   F     +D  V  +++I+ ++EGL R+ S HA G++I    ++  +P  
Sbjct: 528  L-NKALNESPEFYNMYHSDAEVKEIVDIALRIEGLPRNVSQHACGVIIAPSAVTDHIPQV 586

Query: 546  ---YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----KVD 597
                 D  +    TQ+N    E+ GL+K DFLGL+T+ ++ ++   + ++        + 
Sbjct: 587  LLENTDTGAYEHTTQYNKDECEEMGLLKMDFLGLRTMGVMGRAFIDINKKRKELGLEPIT 646

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE-----------GMQPDCIEDIIAL 646
            L  IP DD   Y  +    T G+FQLES+GM   +             M     E +IA 
Sbjct: 647  LESIPLDDIRVYEYIAKGNTAGVFQLESAGMTNFMMELFQDAHTLDAEMGKQLFERLIAG 706

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            +SLYRPGP+D I  Y       E I    P + P+L+ T  +I+YQEQ M I + L+ ++
Sbjct: 707  ISLYRPGPLDEIPNYIKNMLKPEGIEYDVPQLQPILETTYNIIVYQEQCMFIVRELANFT 766

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFAD 758
              ++D +R+ M KK++  +++  E F+         G   NGI + IA+ ++E + KF  
Sbjct: 767  RGQSDTIRKGMAKKVEALLNEYGEYFVHGSEEKGITGCVANGIDEHIAIALWERMKKFGR 826

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            Y FNKSHA  YA I+ +T ++  +YP E++ A++   +   +KIK +   +++  I ++P
Sbjct: 827  YAFNKSHATGYANIAIKTGFLAYYYPTEYMCATLNSFITMSDKIKAYMAVSKRQKIDVLP 886

Query: 819  PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR-VDSKKL 877
            P VN     F V  N I + L  I+ +G  + R I E      F + +D   R    +K+
Sbjct: 887  PDVNKSREVFTVEGNSIRFGLQGIRNMGKISIRLIEERDTRGDFRNFQDCAVRMAKYQKV 946

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KGTFS 935
            +RRVLE+L+F+GA+D F  +R   L  LD +   A    K+  +   +IF          
Sbjct: 947  DRRVLEALIFSGAVDSFEGTRNSKLMMLDALLLVASQERKDYQSGQLSIFDIPLLSQDKI 1006

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN- 994
             ++     +  N   + E E+   GFY S HPLD Y+ +L +           T   +  
Sbjct: 1007 REVLTPTLTEFNIDFKLEKEKEFAGFYISAHPLDSYETLLAEEEFCEIGFLQDTDEKDEA 1066

Query: 995  ---------IRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
                     IR+A ++   +   T+K    +      +   E +   F
Sbjct: 1067 DRVRSYKKSIRVAGIITEIETYYTKKDNKPLNVFKLEDTTGEIKCVAF 1114


>gi|308180707|ref|YP_003924835.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            plantarum subsp. plantarum ST-III]
 gi|308046198|gb|ADN98741.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            plantarum subsp. plantarum ST-III]
          Length = 1116

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 325/1026 (31%), Positives = 522/1026 (50%), Gaps = 39/1026 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V LQV S++SLL    +++ ++         A+A+TD + ++  ++F      A I PI
Sbjct: 4    YVPLQVLSTFSLLHSTSTVSELVQTAKQQGYSALALTDVDIMYGIVDFYNACRQAEINPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  L++           G+       S+V+L     GYQ L++L +          S+ 
Sbjct: 64   LGITLNL----------LGRELTAQTFSLVVLAKDQAGYQNLMQLSTMKQTATDAGLSLT 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
              L +L       L++LT      +      N+++ A   + T ++      LY+ +   
Sbjct: 114  AVLPYL-----NHLMVLTPAKDSELAALLLQNTAERAADWITTLRQAVDSASLYLGISLD 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
            +       + +   A  H+LP+VA +   ++  +DY A  VL A+     + Q +  +  
Sbjct: 169  QAP--ALRTTMTAFAQQHQLPVVALDPVDYVQAKDYFAVSVLRAIDRGQQIEQPESLQGI 226

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               +    +  V         L   V      +   QV        + +      +    
Sbjct: 227  EGSHYLRPANTV-TADYEQLGLTTAVAATAEIAAQCQVELQFQQPQLPQFPTPAGQPANV 285

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR    AGL  RLA  AI      Q Y+ RLD EL VI +M F  YFLIV D + +A +
Sbjct: 286  YLRQLCTAGLTERLA--AITPSVDQQAYQDRLDHELTVIDQMGFDDYFLIVWDVMNFAHE 343

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLN  R +MPD D+D   +RR++
Sbjct: 344  AQITTGPGRGSAAGSLVAYALNITDVDPLKYDLLFERFLNAKRANMPDIDLDIPDNRREQ 403

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V+ YV +KYGH+RVAQIITFG+L AK ALRDVGR   +   ++      IPN     +  
Sbjct: 404  VLNYVHDKYGHDRVAQIITFGTLAAKQALRDVGRVFGLSTYEMSDWSAAIPNQLHITLDQ 463

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                   R +           L E +++LEGL RH STHAAG+V+  +PL Q+VP+    
Sbjct: 464  A-YQGSQRLQNLVADSSKNKLLFETARRLEGLPRHYSTHAAGVVLSQKPLIQIVPLQ-AG 521

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHET 608
               + +TQ+    +E  GL+K DFLGL+ L+L+  +L +   Q G  + ++ I  +D  T
Sbjct: 522  SETMMMTQYTKDTVEAVGLLKMDFLGLRNLSLMASALHYVQRQTGKPLAITKIDLNDPAT 581

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T G+FQ ES+G+R  L  + PD  E + A+ +LYRPGP++NI  +  RK G+
Sbjct: 582  LKLFQAGDTTGVFQFESAGIRNVLRRLHPDNFELVAAVNALYRPGPMENIDHFIARKQGQ 641

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E +      + P+L  T G+++YQEQVMQ+A ++ G++L EAD+LRRAM KK +  +DK 
Sbjct: 642  EPVSYPAEQLAPILGPTYGILVYQEQVMQVAAVMGGFTLGEADLLRRAMSKKKRAVIDKM 701

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +++FI+GA +NG S+ +A  +++ + +FA+YGFN+SHA AY+ ++++ A++K HY   F 
Sbjct: 702  RQQFIAGAQQNGYSEAVATQVYQYIEQFANYGFNRSHAIAYSKMAFELAYLKVHYSGAFF 761

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             + M   + N  K+K++  +ARQ  + I+PP +N     F      I + L++IKG+   
Sbjct: 762  TSLMNSVLGNGTKLKQYLAEARQHQVAIIPPDINRSGQYFDWNGQAIVFGLSSIKGLRRD 821

Query: 849  TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
                +++   A+ PF SL+ F  R+D+K L   ++++L++AGA D FG +R +LL S+  
Sbjct: 822  FIASVLDERQANGPFKSLQQFMQRIDAKWLKADLMDALIYAGAFDHFGLNRAELLTSVPE 881

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +   A            ++F            ++K    +   R   E   LG Y SGHP
Sbjct: 882  LMSSA-----ELAGGSMSLFESL------APKIKKQPELSLGERLAKEAEYLGVYVSGHP 930

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            ++ Y   L +                  ++   +   +  +T++G  + + T S+ + E 
Sbjct: 931  VETY-DWLAQQRHTQL--VSTLTSEQPAQILVYITKVRTIRTKRGQPMAFATGSDLSGEI 987

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 988  DLTIFP 993


>gi|134093911|ref|YP_001098986.1| putative DNA polymerase III subunit alpha [Herminiimonas
            arsenicoxydans]
 gi|133737814|emb|CAL60859.1| Error-prone DNA polymerase [Herminiimonas arsenicoxydans]
          Length = 1045

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 279/1041 (26%), Positives = 464/1041 (44%), Gaps = 71/1041 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S+++ L+GA     ++ +       ++AITD  +L   +    +A    + 
Sbjct: 6    PAYAELHCRSNFTFLQGASHPEELVQRACDLGYDSLAITDECSLAGVVRAYVEAKKHNLH 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG  + +                     +V L +   GY  L EL++        K  
Sbjct: 66   LIIGSDITLSCG----------------TRLVFLATNRNGYGNLSELITLGRRRAD-KGF 108

Query: 129  VRICLSWL-----QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
              +  S L     QE  +  L  L    +  I +       +   ++     + F  R +
Sbjct: 109  YTLHRSDLDPDERQEPNSIHLAQLPDCLAILIPKCCCSR--EEIARQAAWLARTFVGRAW 166

Query: 184  VNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            V  +  H   D Y    +  +A   +LPLVAT + L          D L AV     V++
Sbjct: 167  VAAELLHWSDDEYWLDLLTGIAAEMDLPLVATGDVLMHVRSRKPLQDTLTAVRLGKSVAE 226

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                          RS +       PE L+ T+ +A+ C+F L       P  I    + 
Sbjct: 227  CGMDLQPNA-EQHLRSRLRLAQLYSPELLQETLTLAKLCTFSLDELRYQYPEEIVPAGET 285

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +     + LR     G   R  +  I       + RQ+++ EL +I  + +  +FL V D
Sbjct: 286  LS----SYLRRLTYEGATQRRFRQGI-----PANIRQQIEHELVLITELNYEPFFLTVYD 336

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+   I    GRGS A SV  Y L IT++DP R S+LFERF++ +R   PD D+DF
Sbjct: 337  IVKFARSKGIL-CQGRGSAANSVVCYCLGITEVDPARSSVLFERFISRERNEPPDIDVDF 395

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EVI+Y+ NKYG  R A      + + ++A++DVG+AL + + QV+RL +     
Sbjct: 396  EHQRREEVIQYIYNKYGRHRAALTAALITYRPRSAMKDVGKALGLDFEQVNRLSQSHKWW 455

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +S + + +           P V +L+E+++ L G  RH S H  G VI    L++L
Sbjct: 456  DGREISDERLQE----GGFDPQAPIVQKLVELTKTLIGFPRHLSQHTGGFVIARDSLARL 511

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLI 601
            VP+      D  V +++   ++  GL+K D L L  L+ +Q++L+ +  +RG  V++  I
Sbjct: 512  VPIENASMKDRSVIEWDKDDLDALGLLKVDVLALGMLSAIQRALEMISTRRGRMVEMQDI 571

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P +D  TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+
Sbjct: 572  PSEDPLTYEMISAADTIGVFQIESRAQMSMLPRLRPQKYYDLVVQVAIVRPGPIQGGMVH 631

Query: 662  NN---RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
                 R    + IV   P I   L  T GV I+QEQVMQIA L +GY+  EAD LRR+M 
Sbjct: 632  PYLKQRHMHPDDIVYPGPEIKEALSRTFGVPIFQEQVMQIAVLAAGYTPGEADELRRSMA 691

Query: 719  KK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
                K  ++K  ++   G +KNG     A  +FE +  F +YGF +SHAA++A++ Y +A
Sbjct: 692  AWKRKGNLEKHGDKLKKGLAKNGYDPEFANRLFEQIKGFGEYGFPESHAASFALLVYVSA 751

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----- 832
            W+K H P  FLAA +  +        +  QDA++  + + P  V    ++  + D     
Sbjct: 752  WIKRHEPAAFLAALLNSQPMGFYSASQLVQDAKRHGVPVRPIDVLISELESTMEDIHERY 811

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              +   L  +KG+    A+ I+EA A + F  ++D   R +   L++  L +L  A AL 
Sbjct: 812  PAVRLGLHMVKGLSLDGAKRIIEARAHQSFKDVDDLARRAE---LDQHELGALARANALL 868

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                 R Q    +  +   A  + ++   + E +                    +     
Sbjct: 869  PLSGHRRQAKWEVAAMM-SAPMLLRDAPIREEPLL---------------LPAASEGQEI 912

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              +    G   + HPL + +P L+KM +    E          R   +V  +Q+  T KG
Sbjct: 913  VADYASTGLTLNRHPLALLRPRLKKMNLSTALEMKGFADRKIARTTGIVTMRQRPPTAKG 972

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
            +   +VT  +         +P
Sbjct: 973  TM--FVTLEDETGITNVIIWP 991


>gi|309775411|ref|ZP_07670414.1| DNA polymerase III, alpha subunit [Erysipelotrichaceae bacterium
            3_1_53]
 gi|308916800|gb|EFP62537.1| DNA polymerase III, alpha subunit [Erysipelotrichaceae bacterium
            3_1_53]
          Length = 1026

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 352/1025 (34%), Positives = 574/1025 (56%), Gaps = 43/1025 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL V S Y+LL+  L++  I          A+A+TD + +  A+ F        I+PI 
Sbjct: 3    VHLHVRSCYTLLQSTLTVAKIAAAAKRCGYTAVALTDKHVMHGAMAFYHACKKEQIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++D+  +D++                VLL     GYQ L++L + +   ++ +    +
Sbjct: 63   GMEVDVLEKDDV-------------YGFVLLAKNDHGYQNLMKLSTWLNTGEETR---TL 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190
             L  L     +  I++T G    ++         +    L   +  F D  YV + R+  
Sbjct: 107  DLDTLAFYAKDC-IVITNGDQNQMETLIVKEELDLLRHWLKVCQAQFAD-FYVAVSRNDS 164

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G  + +   + QL     +P  A +   F   ED E++  L A+     +  K     +P
Sbjct: 165  GLMQKKNPVLKQLCKELGIPYTALSRVYFEYAEDEESYKTLCAIDQGVSLQDKMLN-YSP 223

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              Y ++ +EM +++ D   A+ +   IA  C+  +     +LP+F  K         E  
Sbjct: 224  RRYFRSPAEMQALYEDEELAMSD--HIAAMCNVEMSFPKAVLPKFHNKYGV----SSEEF 277

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR+    GL+ R+    I+       Y+QRLD+EL+VI RM+++ YFLIV DFI++AK  
Sbjct: 278  LRSLCQKGLQKRMQFQTIS-----DVYQQRLDYELDVIIRMQYADYFLIVWDFIRFAKTQ 332

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I +GPGRGS AGS+ AY L IT +DP+R+ LLFERFLNP+R+SMPD D DF  +RRDEV
Sbjct: 333  HIYIGPGRGSAAGSLVAYCLGITHVDPIRYHLLFERFLNPERISMPDIDTDFPDNRRDEV 392

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV+  YG  RV+ IITF +L AK  LRDVG+A+++   Q+DRLCKL+PN     +   
Sbjct: 393  IRYVEELYGKHRVSHIITFNTLAAKQVLRDVGKAMEINPRQIDRLCKLVPNVLKATLDFA 452

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
               ++ RF+E      ++ RL  +++KLEGL RHAS HAAGIV  +  + Q+ P+  DV 
Sbjct: 453  -YHNEPRFKEIINNGETMGRLYAVARKLEGLPRHASLHAAGIVFSNEDIEQVCPLI-DVD 510

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609
              +  TQF M+++E+ GLIK DFLGL+ LT++ + +    A    K+D+  IP DD +TY
Sbjct: 511  EGVCATQFTMEYLEELGLIKMDFLGLRNLTIIDEIVQHINAASDQKLDIMHIPLDDPKTY 570

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L+    T+G+FQLES GM+  +  MQP   EDI+A ++L+RPGP++NI  Y +R+   E
Sbjct: 571  ALIRAVDTVGVFQLESEGMKNLIRKMQPKSFEDIVATIALFRPGPMENIPEYLDRRAHPE 630

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  IHP + P+L+ T G++IYQEQ+MQ+AQ ++G++L +AD LR+A+ KK  +E+ K +
Sbjct: 631  KVDYIHPSLQPILQNTYGIMIYQEQIMQVAQTMAGFTLGKADNLRKAISKKKGDELQKMR 690

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E FI GA + G ++ +A  ++ L+ KFA+YGFN+SH+ AY +I+YQ A++K + P+ F  
Sbjct: 691  EEFIQGALQKGYTEALAQRVYALIMKFANYGFNRSHSVAYGMIAYQLAYLKANAPLYFFN 750

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            + +   + +  K  ++  +AR+  IQI+ P VN  C  + + +N + +    IKG+G+  
Sbjct: 751  SLLNSVIGSETKTSEYVFEARKRRIQILLPDVNRSCNQYVIEENALRFPFVGIKGIGSAV 810

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            +  I+E       F    DF +R++  K+ ++ +E L++AGALDCF ++R  L+ SLD+ 
Sbjct: 811  SSQIVEERKKKGQFRDFFDFTARMNGNKIGKKTIEILIYAGALDCFKFARASLMASLDDA 870

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +YA  V+    ++   +F  +  +      ++     N+++R E E+  +GFY S HP+
Sbjct: 871  LRYADLVKIEDVDQV--LFDFDLVSKPAMTVVKD----NAAIRAEKEKEAIGFYLSRHPI 924

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
               +  + +        S+   +G  ++   ++   +Q +T+ G  + +V  S+   +++
Sbjct: 925  ADVRSKMGRE--LPVLVSLPKHKGRYVKFVCLIDRCRQYRTKNGDMMMFVVGSDETGKFD 982

Query: 1029 ANFFP 1033
                P
Sbjct: 983  LVCMP 987


>gi|313637979|gb|EFS03276.1| DNA polymerase III subunit alpha [Listeria seeligeri FSL S4-171]
          Length = 962

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 359/996 (36%), Positives = 561/996 (56%), Gaps = 41/996 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHLQV S+Y LL    S+++++ K      PA+AITD N L+ A+EF QK  AA I+PI
Sbjct: 3    FVHLQVASAYDLLSSTASVDSLVAKAKEYHYPALAITDKNVLYGAVEFYQKCLAADIKPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + I          QG         ++L+  T  GY  L+++ S +   ++G++  +
Sbjct: 63   IGMTVTI----------QGYLNPINSYELILIAETTAGYHELLKIASAIQTREEGQELPQ 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
               SWL+   +E LI ++ G+ G ++R     +   A +       +FG D +Y++LQ+ 
Sbjct: 113  ---SWLRAY-SEDLIAISPGAKGEVERLLMEENRDGALEAYQNLVAIFGGDSVYLSLQKE 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                     ++       ++  VAT N  ++  +D +A +VL A+  +  V  +  P   
Sbjct: 169  NP---RLFGKIETFCTEEKVRAVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWETLPLAG 225

Query: 250  PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P+++           +D   +  E T E+A RC   + +   +LPRF      +  +   
Sbjct: 226  PNYFTSQEEIEREWQTDFEKQVCEETGELAARCKVEIALDQHLLPRFPL----NADQSAS 281

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR  A AGLE R        G  A DY++RLD+EL VI  M F+ YFLIV D I++++
Sbjct: 282  EVLRQTAYAGLEER--------GLMAPDYQERLDYELKVITEMGFADYFLIVWDVIRYSR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RRD
Sbjct: 334  EAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     + 
Sbjct: 394  EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +AI ++ R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V +   
Sbjct: 453  QKAIQENPRLENHIKSSKINEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHE 607
               D  +TQF M  +EK GL+K DFLGL+ L+LL + L      R   + L+ I  +D +
Sbjct: 513  S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYNREKPLTLAAISLEDEK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  T  T G+FQ ES G+R+ L  ++P   EDI+A+ +LYRPGP++ I  +  RK+G
Sbjct: 572  TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDIVAVDALYRPGPMEQIDTFIARKHG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KE I   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++
Sbjct: 632  KEAIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNE 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++  F+ GA   G S++ A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K +YP  F
Sbjct: 692  ERIHFVEGARSKGYSESSANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKANYPAAF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVG 846
            +++ ++    N +KI ++  +A+ + I+++ PS+N     F++  +N I YS   I+ V 
Sbjct: 752  MSSLLSSVFGNDDKISQYITEAKNYGIRMLAPSINHSNYYFQMEGENAIRYSFRVIRKVP 811

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
            T     I+      PF    DFC R+  K L   +LE+LV +G  D FG  R  +L ++D
Sbjct: 812  TKFILEIINERKKAPFQDFFDFCERMPHKMLTETILEALVLSGCFDEFGEDRATVLATID 871

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSG 965
             + +Y   + ++  +K  N+FA +       K    K +  +   + E E+   G Y S 
Sbjct: 872  AVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYRKAAPISIDEKLEKEKLYTGQYVSA 929

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            HP+  Y+  L+ + I    +      G N R+A  V
Sbjct: 930  HPVSYYQTKLQNLAITRLADI---HSGKNYRVAVYV 962


>gi|23099632|ref|NP_693098.1| DNA polymerase III alpha subunit [Oceanobacillus iheyensis HTE831]
 gi|22777862|dbj|BAC14133.1| DNA polymerase III (alpha subunit) [Oceanobacillus iheyensis HTE831]
          Length = 1106

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 333/1027 (32%), Positives = 525/1027 (51%), Gaps = 48/1027 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL + S YSL+E  +++  ++DK   ++Q A+A+TD   L+ A+ F +     GI+P
Sbjct: 2    SFTHLYIKSGYSLMESTITIPKLIDKAKQERQEALALTDIGVLYGAISFYKACIDNGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  + +  +   +               VLL     GYQ LI L + + +        
Sbjct: 62   IIGLTVMVKDEQLNETVPC-----------VLLAKNNNGYQNLISLSTNININGNE---- 106

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             +  S L     + + +L      P+        ++       ++  LF  D  Y+ + R
Sbjct: 107  EVEKSLLDNYTDDIVGIL------PVTTGMEKVFTEELGTYFSSWSNLFSDDDFYIGVDR 160

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            H          +  L+    +PL +     +L E D+ A+D L A+ +           +
Sbjct: 161  HSL---EVIQSLQSLS----IPLTSIQEVRYLHENDHIAYDCLQAIRYGEKWDG---TEI 210

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
               +   + +    +           +    R      +   +  R+I           +
Sbjct: 211  NSKNKQLHFTTEKEMEDLFQYIAPEALANTERIKDKCNLEINMNERYIPSFPVPNSLTAD 270

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L+   ++ +E                   RL++EL VI  M +S YFLIVADFIQ+AK
Sbjct: 271  SYLQQLCISKIEE-------RYKERNDQIMNRLNYELEVIQSMNYSDYFLIVADFIQYAK 323

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N I VGPGRGS AGS+ AY L IT++DPL ++LLFERFLNP+R+SMPD D+DF   RRD
Sbjct: 324  DNQIAVGPGRGSSAGSIVAYLLGITEVDPLEYNLLFERFLNPERLSMPDIDVDFSDVRRD 383

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI YV+ KYG + VAQIITFG+  A++ LR++ + L +    ++ + K IP      ++
Sbjct: 384  EVIDYVREKYGQDHVAQIITFGTFAARSVLRELMKTLDVHEMDMNYVMKEIPTQSNRSLT 443

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
               + +    +        +  L  I+ KLEG+ R+ STHAAG+VI ++ L+  VP+   
Sbjct: 444  DI-LKEKEELKAYVKQSSRLKLLFSIAVKLEGIPRNVSTHAAGVVISEKKLTNHVPL-TI 501

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
              +   +TQ+ M  +E  GL+K DFLGL+ L+L++K    +   R   + L+ IP  D  
Sbjct: 502  GTNQTYLTQYAMGELETIGLLKMDFLGLRNLSLIEKVNTAITNSRHRSLQLAEIPEQDEA 561

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL    T G+FQLES GM++ L+ + P   EDI+A+ +LYRPGP+D I  Y  RK  
Sbjct: 562  TFQLLRKGHTNGVFQLESDGMKKVLQELMPSTFEDIVAVNALYRPGPMDFIPTYIRRKKN 621

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             E +   HP + P+L +T GV+IYQEQ+MQIA +++G++L EAD+LRRA+ KK + +M K
Sbjct: 622  VEPVSYPHPDLKPILSKTYGVLIYQEQIMQIANVIAGFTLGEADILRRAVSKKKESDMYK 681

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            QK+ FI G    G  K +A  IF  + +FA+YGF +SHA AY+ ISYQ A+MK HYP  F
Sbjct: 682  QKQAFIDGCINRGYKKEVADEIFSWIVRFANYGFPRSHAVAYSKISYQLAYMKAHYPNAF 741

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
             A  ++   +  EKI  + Q+ ++ N  I+PP +N     + V    I   L+AIKG+G 
Sbjct: 742  YAELISGVRNQQEKINTYIQEFKKLNGNILPPDINKSYGKYAVERKDIRMGLSAIKGIGI 801

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               + I++A  D  F +  DFC RV+ K ++R ++E+LV  G  D    +R  LL S+D 
Sbjct: 802  QPIQEILQARKDGTFKNFFDFCMRVNLKIVSRTIIENLVLVGVFDSIYRNRASLLASIDQ 861

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
              +  +  ++       ++F  +        +  +        +  +E+ +LGFY S HP
Sbjct: 862  AIEQKELFKEFLD--QPSLFQDQIEMVE---SYTEIEDFTKIKKLSDEKELLGFYVSSHP 916

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIR-LAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            L  Y+  LR  G      +   +    +     +V + +  +T++G R+ ++T S+   E
Sbjct: 917  LKEYRKKLRSAGNITLSHAKKLVNTRKVIHAVVIVDAMKVIRTKRGDRMAFLTISDEELE 976

Query: 1027 YEANFFP 1033
             +A  FP
Sbjct: 977  IDAVLFP 983


>gi|313206116|ref|YP_004045293.1| DNA polymerase iii, alpha subunit [Riemerella anatipestifer DSM
            15868]
 gi|312445432|gb|ADQ81787.1| DNA polymerase III, alpha subunit [Riemerella anatipestifer DSM
            15868]
 gi|315022923|gb|EFT35946.1| DNA polymerase III alpha subunit [Riemerella anatipestifer RA-YM]
 gi|325336439|gb|ADZ12713.1| DNA polymerase III, alpha subunit [Riemerella anatipestifer RA-GD]
          Length = 1550

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 325/1034 (31%), Positives = 525/1034 (50%), Gaps = 82/1034 (7%)

Query: 15   QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS--------------- 59
              HS +S L+   S+ +++DK  ++Q PA+ + D  N+  A +F                
Sbjct: 252  HNHSIFSSLQSTTSIGDLIDKAKSNQFPAVGMVDLGNMMGAFKFVSDVEKYNSGVKKAHQ 311

Query: 60   ------QKACAAG------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
                  QKA   G            +  ++GC+  I   D  +     K       ++VL
Sbjct: 312  EYLANKQKAEEEGADFNENAPESKELMAVLGCEFYIS--DRPEQKQFTKDDPDRRTNVVL 369

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
            L     GY+ L +L S  Y+        R+    + +   + +I +T G  G I  A   
Sbjct: 370  LAKNFNGYKNLAKLSSLGYVNGFYFGVPRVSREMVAQY-KDDVIAVTSGIYGDIPDAILN 428

Query: 162  NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFL 220
               Q  E+R   +K+ FG+  YV LQ H   +    ++ ++  A  + + ++A N + + 
Sbjct: 429  FGEQKGEERFKWWKETFGEDFYVQLQNHGLQEEEHLNEVLLDFADRYNVKILAQNETFYT 488

Query: 221  SEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALEN 273
             + D    D++  +     +S          +   + + Y+K+  E+   F   P+A E 
Sbjct: 489  DKSDANIQDIVSCIKDGEKLSTPVGKGFGKRKGLRSQEFYIKDAEELKQCFRQYPDAFEA 548

Query: 274  TVEIARRCSFILQVHAPILPRFIEKEC--------DDIQKEEENELRNKAVAGLEVRLAQ 325
              E+  +          +LP+F   E         D  ++ E   LR+    G +     
Sbjct: 549  YTELLSKFEPYTLKRDVLLPKFDIPEEFQSEEDLKDGGKRGENAYLRHLTYEGAKK---- 604

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                      D R+RLDFEL +IA   + GYFLIV DF   A+K  + VGPGRGS AGS 
Sbjct: 605  ---RYDEITDDIRERLDFELEIIANTGYPGYFLIVQDFCNEARKMGVWVGPGRGSAAGSA 661

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY + IT++DP+++ LLFERFLNP+R+SMPD DIDF  + RD +I++V +KYG   VAQ
Sbjct: 662  VAYCIGITNVDPIKYDLLFERFLNPERISMPDIDIDFDDEGRDRIIKWVIDKYGKSNVAQ 721

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV-----SLQAIADDSRF-- 498
            IIT+  L  K+A++D GR L +P  + + + KL+P+ P   +         + D+ +   
Sbjct: 722  IITYSVLGGKSAIKDAGRVLDVPIPETNNIAKLVPSVPGMNIAKALSKYDKLKDEDKVLV 781

Query: 499  ----REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS-DL 553
                      +     +L+ ++K+EG  R+   HA G++I    +S LVP+    +  D+
Sbjct: 782  DEMKAVLDNPNDQRFPVLDSAKKMEGCIRNTGIHACGVIITPEDISNLVPISIAAKDADI 841

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLL 612
             V+QF+    E AGL+K DFLGL+TLT+++ +L  + +R  + ++   I  DD +TY L 
Sbjct: 842  LVSQFDNSVAESAGLLKMDFLGLRTLTIIKDALKLVKERHGIDINPDEISLDDAKTYQLF 901

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
                T+GIFQ ES GM++ +  ++P    D+IA+ +LYRPGPI  I  + NRK+G E+I+
Sbjct: 902  KEGRTIGIFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPIKYIPNFINRKHGVEEII 961

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
               P  +  LKET G+ +YQEQVM ++Q L+ ++  EAD LR+AMGKK  + ++K   +F
Sbjct: 962  YDLPETEEYLKETYGITVYQEQVMLLSQKLANFTKGEADTLRKAMGKKQIDVLNKMYPKF 1021

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I G  KN + +     I+     FA+Y FNKSH+  YA+I+YQTA++K +YP E++A+ M
Sbjct: 1022 IEGGKKNNLDEEKLNKIWNDWKAFAEYAFNKSHSTCYALIAYQTAFLKANYPAEYMASVM 1081

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTAR 851
            +  ++N  +I  F +D R   + ++ P VN     F V D  +I + L AIKG+G   + 
Sbjct: 1082 SNNINNTAQITMFMEDCRAMGVDVLGPDVNESQYKFSVNDKGQIRFGLGAIKGIGEGPSE 1141

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQ------- 903
             I +  A   F ++ DF  RV   ++N+RV+ESLV AGA D    Y R Q          
Sbjct: 1142 AISQERAKGKFKNIYDFFERVTPSQVNKRVVESLVMAGAFDEVDTYHRAQYFDIDNSGKT 1201

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
            +++ + +Y Q  ++++     ++FA   +    ++  +       +  +   E+ ++GFY
Sbjct: 1202 NIEKLIRYGQSFQESKNEVENSLFADFAEEIQIEQPKIAPAMEWQNMHKLNKEKEIIGFY 1261

Query: 963  FSGHPLDVYKPILR 976
             S HPLD YK   R
Sbjct: 1262 LSAHPLDEYKYQFR 1275



 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 5/36 (13%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 993  NNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEY 1027
                +A ++     +  +  G +I ++T  + +  Y
Sbjct: 1385 KEYTVAGLITEYTIRDGKNSGEKIAFLTLEDYSGSY 1420


>gi|300778928|ref|ZP_07088786.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
 gi|300504438|gb|EFK35578.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
          Length = 1555

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 327/1035 (31%), Positives = 519/1035 (50%), Gaps = 80/1035 (7%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--------ACAAG- 66
             HS +S L    S+N+++ K + +  PA+ + D  N+  A +F           A     
Sbjct: 253  NHSVFSTLTATSSINDLIKKASDENFPAVGMVDLGNMMGAFKFVSAVEGANADRAKKHKE 312

Query: 67   ------------------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
                                    + P++GC+  I   D  +     K        +VLL
Sbjct: 313  YLAKKQEAEENGTEFNEEEPVSEPLIPVVGCEFYIS--DRYEQKQFTKDDPDRRTQVVLL 370

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
                 GY+ L +L S  +L        R+    + +   EG+I LT G  G I  A    
Sbjct: 371  AKDFNGYKNLAKLSSIGFLKGFYFGVPRVSRELIAQY-KEGVIALTSGIMGDIPDAILNT 429

Query: 163  SSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLS 221
              Q  E+    +K  F D  YV +Q H+  +    ++ ++ LA  + + ++A N + + +
Sbjct: 430  GEQKGEELFKWWKDTFEDDFYVQIQNHKLPEEEHLNEVLLYLADKYNVKILAQNETFYTN 489

Query: 222  EEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALENT 274
            ++D    D++  +     ++          R   T ++Y+K+  E+   F   P+A +  
Sbjct: 490  KDDANIQDIVSCIKDGEKLTTPIGKGFGKRRGLATGEYYIKSSDEIKEAFLAYPDAFDAY 549

Query: 275  VEIARRCSFILQVHAPILPRFIEKE--------CDDIQKEEENELRNKAVAGLEVRLAQG 326
             E   +          +LP+F   E         D  ++ E   L +    G + R  + 
Sbjct: 550  EEFTAKFKPYTLKRDVLLPKFDIPEEFIHAEDEVDGGKRGEMAYLTHLTYEGAKNRYGEE 609

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
             I       + ++RLDFEL VIA   + GYFLIV DF   A+K  + VGPGRGS AGS  
Sbjct: 610  GI-----TDEIKERLDFELEVIANTGYPGYFLIVQDFCNEARKMGVWVGPGRGSAAGSAV 664

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AY + IT++DP+++ LLFERFLNP+R+SMPD DIDF  + RD VI++V  KYG  +VAQI
Sbjct: 665  AYCIGITNVDPIKYDLLFERFLNPERVSMPDIDIDFDDEGRDRVIKWVIEKYGQSQVAQI 724

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD---SRFREARL 503
            IT+  L  K+A++D GR L +P    + + KLIP+ P   ++      D      +    
Sbjct: 725  ITYSVLGGKSAIKDAGRVLDVPIPDTNNIAKLIPSTPGMNIAKALAKYDKLKPEEQMLVD 784

Query: 504  ADPS--------VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS-DLP 554
                           +L  ++K+EG  R+   HA G++I    +S LVP+    +  D+ 
Sbjct: 785  EMRYVLESPDDSRHGVLASAKKMEGCIRNTGIHACGVIITPEDVSNLVPVTIAAKDADIL 844

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLT 613
            V+QF+    E AGL+K DFLGL+TLT+++ +L  +  R  V +D  LIP DD +TY L  
Sbjct: 845  VSQFDNSVAESAGLLKMDFLGLRTLTIIKDALKLVKARHGVDIDPDLIPLDDAKTYQLFK 904

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
               T+GIFQ ES GM++ +  ++P    D+IA+ +LYRPGPI  I  + NRK+G E+IV 
Sbjct: 905  EGRTVGIFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPIKYIPNFINRKHGIEEIVY 964

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
              P  +  LKET G+ +YQEQVM ++Q L+ ++  EAD LR+AMGKK  + ++K   +FI
Sbjct: 965  DLPETEEYLKETYGITVYQEQVMLLSQKLANFTKGEADTLRKAMGKKQIDVLNKMYPKFI 1024

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
             G  KN +++     I+     FA+Y FNKSH+  YA I+YQTA++K +YP E++A+ M+
Sbjct: 1025 EGGRKNNLNEERLEKIWNDWKAFAEYAFNKSHSTCYAFIAYQTAYLKANYPAEYMASVMS 1084

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARH 852
              ++N + I  F +D +   + ++ P VN     F V +  +I + L AIKG+G   +  
Sbjct: 1085 NNINNTDSITMFMEDCKSMGVDVLGPDVNESQYKFSVNEKGQIRFGLGAIKGIGEGPSEA 1144

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY-SRMQLLQ-------S 904
            I     +  F ++ DF  R+   ++N+RV ESLV AGA D      R Q          +
Sbjct: 1145 ITRERENGRFKNIYDFFERILPSQMNKRVAESLVLAGAFDELDSFHRGQYFDIDMAGKTN 1204

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
            L+ + +Y Q  ++++     ++FA   +    ++  L       +  +   E+ ++GFY 
Sbjct: 1205 LERLIRYGQSFQESKNEMEHSLFADFAEEVQIEQPKLAPCPEWPNMHKLNKEKEIIGFYL 1264

Query: 964  SGHPLDVYKPILRKM 978
            S HPLD +K   + M
Sbjct: 1265 SAHPLDEFKYQFQFM 1279



 Score = 44.4 bits (103), Expect = 0.098,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 992  GNNIRLAAMVVSKQQK-KTRKGSRIGWVTFSEPAKEY 1027
            G    +A ++   + +   R G ++ +VT  + +  Y
Sbjct: 1389 GKEYTVAGLITEYRVQDGFRSGEKVAFVTLEDYSGSY 1425


>gi|169630782|ref|YP_001704431.1| error-prone DNA polymerase [Mycobacterium abscessus ATCC 19977]
 gi|169242749|emb|CAM63777.1| Error-prone DNA polymerase [Mycobacterium abscessus]
          Length = 1078

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 278/1037 (26%), Positives = 463/1037 (44%), Gaps = 69/1037 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS++S L+GA     ++ + A     A+AITD +  +  + F++ A   G+  +
Sbjct: 42   YAELHAHSAFSFLDGASLPEEMVQEAARLDLKALAITDHDGFYGVVRFAEAAKELGLPTV 101

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----GK 126
             G +L +           G+        +++L    EGY+RL   ++  +L        K
Sbjct: 102  FGAELSL----------GGQGNTEDSVHLLVLARGQEGYRRLSRQMAGAHLSGGTPKDRK 151

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
               R  L  L E       +LTG   G + RA        AE+ L      FG DR+ + 
Sbjct: 152  GKPRYDLDALTEAAGGHWHILTGCRKGHVRRALAGGGPVAAERALANLVDRFGADRVSIE 211

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L RH    +  R +++  LA    + ++AT  + F + E       + AV     +    
Sbjct: 212  LNRHGHPGEDERNAELAALARGFGVGVIATTAAHFATPESGRLAMAMAAVRARKSLDDAA 271

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     +L++  EM  +FS  PE +    E+   C+F L++ AP LP F        
Sbjct: 272  GWLDPVGGAHLRSGDEMARLFSHYPEVVTAAAELGEECAFDLRLIAPQLPPFDVPSG--- 328

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E++ LR+ A+ G   R           AQ    +++ EL +IA++ F GYFL+V D 
Sbjct: 329  -HTEDSWLRHLALEGAARRYG-----PRAGAQKAYAQIERELEIIAQLNFPGYFLVVHDI 382

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
             Q+ ++++I    GRGS A S   YAL +T++DP+   LLFERFL+P R   PD DID  
Sbjct: 383  TQFCRRSDIL-CQGRGSAANSAVCYALGVTNVDPVDNGLLFERFLSPARDGPPDIDIDIE 441

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D R++ I+YV NKYG E  AQ+    + + + A+RD+ +AL     Q D   K + +  
Sbjct: 442  SDEREQAIQYVYNKYGREYAAQVANVITYRGRMAVRDMAKALGFAQGQQDAWSKQMGHWG 501

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                            +A   D    ++++++++++   RH   H+ G+VI DRPL+ +V
Sbjct: 502  G-------------LADAAAVDGIPPQVIQLARQIKDFPRHMGIHSGGMVICDRPLADVV 548

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+      +  V Q++       GL+KFD LGL  L+ L   +D + +   + VDL+ I 
Sbjct: 549  PVEWARMENRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHYCIDLVREHKGIDVDLAHIN 608

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
              +   Y +L    ++G+FQ+ES      L  ++P C  D++  V+L RPGPI    V+ 
Sbjct: 609  LKEQAVYEMLARADSVGVFQVESRAQMATLPRLKPKCFYDLVVEVALIRPGPIQGGSVHP 668

Query: 663  ---NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-G 718
                     +     HP +   L +T GV ++QEQ+MQ+A  ++G+S +E+D LRRAM  
Sbjct: 669  YIRRYNKIDKDWQHDHPSMAAALDKTLGVPLFQEQLMQLAVDVAGFSPAESDQLRRAMGS 728

Query: 719  KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            K+  E M++ + RF  G    +GI+  +A  I+E L  FA++GF +SHA ++A + + ++
Sbjct: 729  KRSPERMERLRNRFYEGMRNLHGITGELADRIYEKLYAFANFGFPESHAQSFASLVFYSS 788

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--RI 835
            W K H+P  F AA +  +       +    DAR+  + +  P VN       + +    +
Sbjct: 789  WFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDVNASLSYATLENAGLEV 848

Query: 836  YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
               L A++ +G   A+ I+E      PF SL D   R+   +L    +E+L   GAL CF
Sbjct: 849  RIGLGAVRHIGDDLAQAIVEERKVRGPFVSLLDLTGRI---QLTTAQVEALATGGALGCF 905

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
              SR + L                                     +          R   
Sbjct: 906  DMSRREALWV------------AGAAAAQRP---DRLPGVGVSSRIPALPEMGEVTRAAA 950

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +    G     +P    +  L  MG+   +       G+ + +A  V  +Q+  T  G  
Sbjct: 951  DVWATGVSPDSYPTQFLRARLDAMGVVPAKGLFGVPDGSRVLVAGAVTHRQRPATAAG-- 1008

Query: 1015 IGWVTFSEPAKEYEANF 1031
            + ++   +         
Sbjct: 1009 VTFINLEDETGMVNVVC 1025


>gi|302187800|ref|ZP_07264473.1| error-prone DNA polymerase [Pseudomonas syringae pv. syringae 642]
          Length = 1031

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 272/1044 (26%), Positives = 456/1044 (43%), Gaps = 84/1044 (8%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     +  L   S++S   GA S + + ++       A+AITD   L   +   Q + +
Sbjct: 1    MTSE--YAELHCLSNFSFQRGASSASELFERALRHGYKALAITDECTLAGIVRAWQASTS 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+  I+G ++ I+                  P +VLLV    GY+ L  L++      +
Sbjct: 59   TGLPLIVGSEMHIENG----------------PKVVLLVENQTGYEALCRLITVARRRAK 102

Query: 125  GKQSVRICLSWLQEIGTEGLIML-TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             K   R+      E   +GL+ L      G                      + F +RL+
Sbjct: 103  -KGEYRLLREDF-EPAPDGLLALWLPDLDGDAQACLADGR---------WLCERFAERLW 151

Query: 184  VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-S 241
            + +  HRG  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V  
Sbjct: 152  LGVGLHRGPDDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAE 211

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                     + +L+    +   + D   A   +V IARRC+F L       P  +  +  
Sbjct: 212  AGHLLFANGERHLRPLDVLSEHYPDWLLA--ESVRIARRCTFDLGDLKYEYPHELVPKG- 268

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               +   + LR     G+  R   G           R +++ EL +IA  KF  YFL V 
Sbjct: 269  ---QTPTSWLRELTERGVRRRWPGGL------TPATRAQVEKELALIAEKKFDSYFLTVH 319

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D +++A+  +I    GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+D
Sbjct: 320  DIVEFARSQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISRERNEPPDIDVD 378

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  DRR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L +    
Sbjct: 379  FEHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPPDQINALAEAFSR 438

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                  S + + +           P + R+L ++ +L G  RH S H  G VI + PL  
Sbjct: 439  WSDSLPSPERLREY----GFDADTPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLDT 494

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSL 600
            LVP+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ 
Sbjct: 495  LVPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGQRWTLAT 554

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD +TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V
Sbjct: 555  LPGDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMV 614

Query: 661  YN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
            +    R+NG+E +    P ++ + K T GV ++QEQVM++A L + Y+  EAD LRRAM 
Sbjct: 615  HPYLRRRNGEEAVTYP-PKLESVFKRTLGVPLFQEQVMEVAILAADYTPGEADELRRAMA 673

Query: 719  KKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
               +    +  +ER   G  KNG     A  IFE +  F  YGF +SHAA++A+++Y + 
Sbjct: 674  AWKRHGGLEPHRERLRKGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASC 733

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------ 831
            W+K H P  F  A +           +  QDAR+ +I+I P  V     D  +       
Sbjct: 734  WLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHSD 793

Query: 832  ---DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
               +  I   L  ++G     A  I  A A +PF    D   R +   L+ R  E+L  +
Sbjct: 794  STRNLAIRLGLRMVRGFREEDALRIEAARAKRPFVDATDLTLRAE---LDSRAAEALADS 850

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GAL      R +    +  +                 +F       +  I      +   
Sbjct: 851  GALRGLIGHRHRARWEVAGV------------EAQRPLFDDLPSEETQVI----LPLPTV 894

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
            +     +   LG     HPL + +  L     +  ++ +       + +A +V+ +Q+  
Sbjct: 895  AEDLVADYTTLGTTLGPHPLALLRRQLAAKRFRSSQDLLHLENDRTLSVAGLVIGRQRPG 954

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T  G  + +VT  +         +
Sbjct: 955  TASG--VTFVTLEDEFGMVNVVVW 976


>gi|294010399|ref|YP_003543859.1| DNA polymerase III alpha subunit [Sphingobium japonicum UT26S]
 gi|292673729|dbj|BAI95247.1| DNA polymerase III alpha subunit [Sphingobium japonicum UT26S]
          Length = 1090

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 286/1046 (27%), Positives = 460/1046 (43%), Gaps = 78/1046 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P +  LQV S +S L GA S   +  + A     A+A+ D N+L   +   Q A  
Sbjct: 1    MT-APRYAELQVTSHFSFLRGASSCEELFSQAALAGIEALAVVDRNSLAGIVRAHQAAKT 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++ I+GC+LD+                    S+++  +    Y RL  L+S       
Sbjct: 60   TGVRLIVGCRLDLVDG----------------ASMLVYPTDRSAYSRLCRLLSLGKQR-A 102

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            GK    +    L   G EGLI++        + A           RL   +  FGDR Y+
Sbjct: 103  GKAKCHLEWPDLMAYG-EGLIVVLVPDQADAECAL----------RLRRLRDAFGDRAYL 151

Query: 185  NLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQ 242
             L  R R  D+ R  ++  LA    +P V TN+ LF         DV+  + H+ T+ + 
Sbjct: 152  ALTLRRRPNDQLRIHELSNLATQMRVPTVVTNDVLFHEPARRVLQDVVTCIRHNVTIDAL 211

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             DR     D Y+K   EM  +F+  PEAL  T++IA RC F L   A   P       DD
Sbjct: 212  GDRRERHADRYIKPPEEMHRLFARYPEALARTLQIADRCRFNLDELAYQYPEER----DD 267

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                 +  L      G   R  +G              L  EL +I ++ ++ YFL V  
Sbjct: 268  PALTPQETLAKLTWEGAAQRYPEGV------PDSVIAALRHELRLIEKLGYAPYFLTVNA 321

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+  +I    GRGS A S   Y L IT IDP R  LLFERF++ +R   PD D+DF
Sbjct: 322  IVRFARSKDIL-CQGRGSAANSAVCYVLGITSIDPGRNDLLFERFVSEERREPPDIDVDF 380

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+ V+++V + YG +  A   T    + K ALRDVG+AL +P   +  L   +   
Sbjct: 381  EHERREIVMQWVFDTYGRDHAALCSTVIRYRTKGALRDVGKALGLPEDLIGTLSSQVWAW 440

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                V  + +          LAD  +   L+++++L G  RH S H  G V+    L  L
Sbjct: 441  SEEGVEQRHV----EALNLNLADRRLRLTLDLARQLMGAPRHLSQHPGGFVLTHDRLDDL 496

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLI 601
            VP+      D  V +++   I+    +K D L L  LT ++K LD LA+      DL+ I
Sbjct: 497  VPIEPAAMKDRQVIEWDKDDIDALKFMKVDVLALGMLTCMKKGLDLLAEHKGVNLDLASI 556

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P +D  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI   +V+
Sbjct: 557  PAEDPRTYAMIRKADTLGTFQIESRAQMSMLPRLKPRTYYDLVVQVAIVRPGPIQGDMVH 616

Query: 662  N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                R+ G E +    P ++ +L +T GV ++QEQ M++A   +G++  EAD+LR++M  
Sbjct: 617  PYLRRREGLEPVHYPKPELEKVLGKTLGVPLFQEQAMRVAIECAGFTPGEADMLRKSMAT 676

Query: 720  KIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
                  +   +++ I+G   NG  +  A   F+ L  F  YGF +SHAA++A+I+Y +AW
Sbjct: 677  FKFTGGVSHFRDKLIAGMVANGYEQAFAEQTFKQLEGFGSYGFPESHAASFALIAYASAW 736

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----- 833
            +K  +P  F AA +  +        +  +DA +  + + P   N    D  +        
Sbjct: 737  LKCWHPDVFCAALLNSQPMGFYAPAQIVRDAIEHGVDVRPVCANASRWDCTLEPTSDESR 796

Query: 834  -RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              +   L  +KG+  T    I+ A AD+P+ S++D   R  +       L  L  A A  
Sbjct: 797  YAVRLGLRMVKGLANTHGAAIVSARADQPYTSIDDLWRRAGAPS---AALVQLAEADAFR 853

Query: 893  -CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-----FSDKITLEKFSVE 946
               G +R + L ++  ++                +FA                       
Sbjct: 854  PALGLARREALWAIKALRDE-----------PLPLFAAASAREAGAIPEIDEPAVALRPM 902

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
             +      +   +G     HPL   +  L++  I    E++A   G  +  A +V+ +Q+
Sbjct: 903  TAGGEVVEDYGHVGLTLRTHPLSFLREDLQRRRIVTCAEAMAARDGRWVEAAGIVLVRQR 962

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + KG  + ++T  +         +
Sbjct: 963  PGSAKG--VMFITLEDETGIANLVVW 986


>gi|154252973|ref|YP_001413797.1| DNA polymerase III subunit alpha [Parvibaculum lavamentivorans DS-1]
 gi|154156923|gb|ABS64140.1| DNA polymerase III, alpha subunit [Parvibaculum lavamentivorans DS-1]
          Length = 1085

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 272/1037 (26%), Positives = 454/1037 (43%), Gaps = 60/1037 (5%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S SF  L V +++S L GA     ++    A    AI I D N L   +     A    I
Sbjct: 2    SASFAELAVATNFSFLRGASHAEELVLAAKAQGLSAIGIADRNTLAGIVRAHAAAKEEKI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + ++G +L +                     ++        Y RL  L++        K 
Sbjct: 62   RLLVGARLVLQDG----------------FEVIAYPQDRAAYGRLTRLLTLGNRR-APKG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               + +S L E G     +       P+         +  E +L    + F D +++ L 
Sbjct: 105  ECFLAMSDLLEHGEGHCFIAMPP---PVP-------DEDFEAKLRLIAETFPDSIWLGLT 154

Query: 188  RHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDR 245
                 D  R   V++ LA   ++PLVATN+ L+ S +    HDV+  V    T+     R
Sbjct: 155  PFYRADDVRRHHVLELLARKTQVPLVATNDVLYHSPDRKPLHDVVTCVREHCTLKEAGFR 214

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + ++K+  EM  + + +P+AL  T +I  RCSF L+            +     +
Sbjct: 215  LAANAERHVKSPEEMSRLLAHVPKALSATFDIVERCSFSLEELRY----EYPADNFSEHE 270

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L      G     +QG           R+ +D EL +I  M ++ YFL V D ++
Sbjct: 271  TPQELLVRLTWEGARDFFSQGVD------DKIRKAIDHELKLIEEMAYAPYFLTVHDIVR 324

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  NI    GRGS A S   + L IT ++P    LLFERF++ DR   PD D+DF  +
Sbjct: 325  YARSQNIL-CQGRGSAANSTVCFCLGITSVNPSEIDLLFERFISKDRNEPPDIDVDFEHE 383

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG  R     T  S ++++A+RDVG+   +    +  L +      + 
Sbjct: 384  RREEVIQYIYEKYGRHRAGIAATVISYRSRSAIRDVGKVFGLSEDVISALSRSTWGWSSS 443

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             VS      D+R      +D  +   L+++ +L G  RH S H  G VI   PL ++VP+
Sbjct: 444  GVSQ----KDAREIGLDPSDRRLRLALKLAGELIGFPRHLSQHVGGFVITKGPLDEVVPI 499

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                  D    +++   ++  G++K D L L  LT ++K+ +F+ +     + L+ +P  
Sbjct: 500  QNAAMDDRTFVEWDKDDLDTLGILKIDVLALGMLTCIRKAFEFIEKHYARPMTLAGVPQG 559

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662
            D   Y +L     +G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+   
Sbjct: 560  DKAVYDMLCEADAIGVFQVESRAQMSMLPRLKPRNFYDLVVEVAIVRPGPIQGDMVHPYL 619

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R++GKE+I     +++ +L+ T GV ++QEQ M+IA + +G++  E+D LRRAM    K
Sbjct: 620  RRRSGKEEITYPSSVLEEVLERTYGVPLFQEQAMKIAIVAAGFTPGESDQLRRAMATFRK 679

Query: 723  E-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               +   +++FI+G  KNG  +  A   F+ +  FADYGF +SHAA++A ++Y +AW+K 
Sbjct: 680  SGTIGMYRDKFIAGMLKNGYKQDFAERCFKQIEGFADYGFPESHAASFARLAYISAWLKY 739

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIY 836
            HYP  F AA +  +        +  +DA +  +++ P  VN    D  +         + 
Sbjct: 740  HYPDAFCAALLNSQPMGFYAPAQLVRDASEHGVEVRPVDVNHSDWDCTLEKTTGGKCAVR 799

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  +KGV   T   I        FDS+     +     L  RV+E L  A A    G+
Sbjct: 800  LGLRQVKGVQIATGETIEGKRGKG-FDSIRHLWLKT---GLGPRVIEKLADADAFRSIGF 855

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R + L ++  +  Y    +   T     +FA  +                       + 
Sbjct: 856  DRREALWAVRGLGGYG-NGQNGTTPAALPLFATLEEGGLQVEEDVSLPAMPPGEHVVLDY 914

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             +L      HP+   +P     G     +   T  G  I +A +V+ +Q+  T  G  + 
Sbjct: 915  AMLRLSLKAHPISFLRPRFAACGAISSRQLKETEAGKRISIAGLVLVRQRPGTASG--VI 972

Query: 1017 WVTFSEPAKEYEANFFP 1033
            + T  +         +P
Sbjct: 973  FATLEDETGIANIIIWP 989


>gi|226365695|ref|YP_002783478.1| error-prone DNA polymerase [Rhodococcus opacus B4]
 gi|226244185|dbj|BAH54533.1| error-prone DNA polymerase [Rhodococcus opacus B4]
          Length = 1084

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 279/1032 (27%), Positives = 469/1032 (45%), Gaps = 72/1032 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS++S L+GA     ++++       AIA+TD +  +  + F++ A    ++ +
Sbjct: 61   YAELHAHSAFSFLDGASPPEELVEEAVRLGLEAIALTDHDGFYGVVRFAEAAKELNMRTV 120

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +D                    +++L    EGY+RL   ++  +L    K  +R
Sbjct: 121  FGSELSLDDA-----------------HLLVLARGQEGYRRLSREIAAAHLAGGEKGRLR 163

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
              L  L +       +LTG   G + +A        A  RL      FG DR+ V L  H
Sbjct: 164  YDLDRLADAAGGHWQILTGCRKGHVRQALADGGPDAAAARLRDLIDRFGADRVTVELTHH 223

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                D  R + + +LA  H L ++A+  + F           + AV     +        
Sbjct: 224  GVAEDAERNACLAELAQRHGLRVIASTAAHFAGPPRRRLAMAMAAVRARQSLDDAAGYLA 283

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 +L++  EM  +F+  P+A+    E+   C+F L++ AP LP F   +       E
Sbjct: 284  PAGGAHLRSGEEMAHLFAAYPDAVRGAAELGLECAFDLRLIAPQLPPFDVPDG----HTE 339

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR   + G   R      A     + YRQ ++ EL +I  + F GYFL+V D + + 
Sbjct: 340  ASWLRQLTMDGARRRYG----APADRPEAYRQ-IEHELGIITGLNFPGYFLVVHDIVSFC 394

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K N+I    GRGS A S   YA+ IT++DP+R  LLFERFL+P+R   PD D+D   DRR
Sbjct: 395  KNNDIL-CQGRGSAANSAVCYAIGITNVDPVRNKLLFERFLSPERDGPPDIDVDIESDRR 453

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +E I++V  KYG +  AQ+    + + K+++RD+ RAL     Q D   K +        
Sbjct: 454  EEAIQHVYTKYGRQYAAQVANVITYRGKSSVRDMARALGFSQGQQDAWSKQVSRWGGIGK 513

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                                   +LE++ ++EG  RH   H+ G+VI DRP++ + P+  
Sbjct: 514  E--------------AGTDIPPAVLELAAQIEGFPRHLGIHSGGMVICDRPIADVCPVEW 559

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
               ++  V Q++       GL+KFD LGL  L+ L   +D +A+   ++VDL+ +   + 
Sbjct: 560  ARMANRSVLQWDKDDCAAVGLVKFDMLGLGMLSALHYMIDLVAEHKGIEVDLAQLDLSEE 619

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664
              Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y  R
Sbjct: 620  AVYEMLQRADSVGVFQVESRAQMATLPRLKPRNFYDLVVEVALIRPGPIQGGSVHPYIRR 679

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723
            +N  E +   HP ++  LK T GV ++QEQ+MQ+A  ++G+S +EAD LRRAM  K+  E
Sbjct: 680  RNKLEPVTYDHPSLEKALKRTLGVPLFQEQLMQMAVDVAGFSPAEADQLRRAMGSKRSPE 739

Query: 724  EMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            +M++ + RF  G  + +GI   +A  I+E L  FA++GF +SH+ ++A + + ++W K H
Sbjct: 740  KMERLRGRFYQGMRELHGIGGDVADRIYEKLFAFANFGFPESHSQSFAALVFYSSWFKLH 799

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIYYSLA 840
            +P  F A  +  +       +    DAR+  +++    VN       V      +   L 
Sbjct: 800  HPAAFCAGLLRAQPMGFYSPQSLVADARRHGVRVHGADVNASLAHATVEAGGTEVRLGLG 859

Query: 841  AIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             ++ +GT  A  I+++  D  P+ S  D   RV+   L+    ESL  AGALD FG SR 
Sbjct: 860  EVRHIGTALAERIVDSRGDGGPYTSFLDLTGRVE---LSTAQAESLATAGALDSFGLSRR 916

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            + L +       A    ++R                           +       +    
Sbjct: 917  EALWA----AGAAAGERRDRLPG-----------IGASTRAPTLPGMSDLELAAADVWAT 961

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G     +P +  +P L  +G+      +    G+ + +   V  +Q+  T  G  + ++ 
Sbjct: 962  GVSPDTYPTEFLRPQLDALGVIPAAHLLDVPDGDRVLVGGAVTHRQRPATAAG--VTFIN 1019

Query: 1020 FSEPAKEYEANF 1031
              +         
Sbjct: 1020 LEDETGMVNVVC 1031


>gi|152986891|ref|YP_001350182.1| error-prone DNA polymerase [Pseudomonas aeruginosa PA7]
 gi|167016910|sp|A6VAU7|DNAE2_PSEA7 RecName: Full=Error-prone DNA polymerase
 gi|150962049|gb|ABR84074.1| probable DNA polymerase alpha chain [Pseudomonas aeruginosa PA7]
          Length = 1024

 Score =  606 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 279/1035 (26%), Positives = 451/1035 (43%), Gaps = 78/1035 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
             ++  L   S++S   GA S   +  + A     A+AITD  +L   +   Q A    ++
Sbjct: 2    SAYAELHCLSNFSFQRGASSAAELFARAARLGYRALAITDECSLAGIVRAWQAAREYRVK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G ++ ++                  P +VLL     GYQ+L  L++R       K S
Sbjct: 62   LLVGSEIRLE----------------QGPKLVLLAEDLAGYQQLCRLITRGRRRAD-KGS 104

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    L +   +G++ +                   A        + F  RL++ ++ 
Sbjct: 105  YRLLREDL-QPALDGVLAIW---------LAEPGDDDDA----AWLGECFPQRLWLGVEL 150

Query: 189  HRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HRG  D  R   ++ LA   +LP VA  +            D + A+ +   VS+     
Sbjct: 151  HRGADDDARLRGLLALAARAQLPAVACGDVHMHCRGRRALQDCMTAIRNHLPVSEAGAHL 210

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               +     R             L  T+ IA RC F L+      PR +     D     
Sbjct: 211  F-ANGERHLRPLAALQGIYPEALLAETLRIAERCRFDLEQLKYQYPRELVPAGHD----P 265

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR     G+  R   GA A        R++++ EL +I+ + +  YFL V D + +A
Sbjct: 266  ASWLRRLTEKGIRRRWPDGASA------KVREQIEKELKLISELGYESYFLTVQDIVGFA 319

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  I    GRGS A S   +AL IT++DP R +LLFERFL+ +R   PD D+DF  +RR
Sbjct: 320  RRQKIL-CQGRGSAANSAVCFALGITELDPERINLLFERFLSRERNEPPDIDVDFEHERR 378

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+YV N+YG +R A      +     A+RDV +AL +P  QVD L            
Sbjct: 379  EEVIQYVFNRYGRQRAALTAVVSTYHGAGAVRDVAKALGLPPDQVDALANCCGRWSDRAP 438

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            S + + +             + R+L ++ +L G  RH S H  G VI ++PL  LVP+  
Sbjct: 439  SAERLME----AGFDPQSAVLRRVLALTGELVGFPRHLSQHPGGFVISEQPLDTLVPVEN 494

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD--D 605
                +  V Q++   ++  GL+K D L L  L+ L++S D L +      LSL      D
Sbjct: 495  ASMVERTVIQWDKDDLDAVGLLKVDVLALGMLSALRRSFDLLHELRGGERLSLASIPSED 554

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
              TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V+    
Sbjct: 555  PATYAMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIQVAIVRPGPIQGDMVHPYLR 614

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R+NG+E +      ++ + + T GV ++QEQVM++A + + YS  EAD LRR+M    + 
Sbjct: 615  RRNGEEPVAYPSVELEKVFERTLGVPLFQEQVMELAIVAADYSPGEADELRRSMAAWKRH 674

Query: 724  EM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
               +  +ER   G   NG     A  IFE +  F  YGF +SHAA++A+++Y ++W+K H
Sbjct: 675  GGLEHHRERLTRGMLANGYEADFAARIFEQIKGFGSYGFPESHAASFALLTYASSWLKRH 734

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYY 837
             P  F  A +           +  QDAR+  IQ  P  V     D  +         I  
Sbjct: 735  EPAAFACALINSWPMGFYSPDQLLQDARRHAIQTRPVDVRHSRWDCSLEPIGQEQPAIRL 794

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  I+G     AR I +A   + F  + D   R     L+ R LE L  AGAL      
Sbjct: 795  GLRMIRGFREEDARRIEQARQAQSFTDVHDLGRRA---GLDTRALELLADAGALRGLAGH 851

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R +   ++  +                 +FA         I+L    + +      ++  
Sbjct: 852  RHKARWAIAGV------------EPQLPLFAEGPRIEEPAISLP---LPSRGEELLSDYA 896

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            +LG     HPL + +  L+    +   E V    G  +R+A +VV +Q+ +T  G  + +
Sbjct: 897  LLGTTLGPHPLKLLRVQLKARRCRASRELVGMEHGRPVRIAGLVVGRQRPQTASG--VTF 954

Query: 1018 VTFSEPAKEYEANFF 1032
            +T  +         +
Sbjct: 955  ITLEDEFGMVNVVVW 969


>gi|254556764|ref|YP_003063181.1| DNA-directed DNA polymerase III, alpha chain [Lactobacillus plantarum
            JDM1]
 gi|254045691|gb|ACT62484.1| DNA-directed DNA polymerase III, alpha chain [Lactobacillus plantarum
            JDM1]
          Length = 1116

 Score =  606 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 324/1026 (31%), Positives = 520/1026 (50%), Gaps = 39/1026 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V LQV S++SLL    +++ ++          +A+TD + ++  ++F      A I PI
Sbjct: 4    YVPLQVLSTFSLLHSTSTVSELVQTAKQQGYSTLALTDVDIMYGIVDFYNACRQAEITPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  L++           G+       S+V+L     GYQ L+ L +          S+ 
Sbjct: 64   LGITLNL----------LGRELTAQTFSLVVLAKDQAGYQNLMRLSTMKQTATDAGLSLT 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
              L +L       L++LT      +      N+++ A   + T ++      LY+ +   
Sbjct: 114  AVLPYL-----NHLMVLTPAKDSELAALLLQNTAERAADWITTLRQAVDSASLYLGISLD 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
            +       + +   A  H+LP+VA +   ++  +DY A  VL A+     + Q +  +  
Sbjct: 169  QAP--ALRTTMTAFAQQHQLPVVALDPVDYVQAKDYFAVSVLRAIDRGQQIEQPESLQGI 226

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               +    +  V         L   V      +   QV        + +      +    
Sbjct: 227  EGSHYLRPANTV-TADYEQLGLTTAVAATAEIAAQCQVELQFQQPQLPQFPTPAGQPANV 285

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR    AGL  RLA  AI      Q Y+ RLD EL VI +M F  YFLIV D + +A +
Sbjct: 286  YLRQLCTAGLTERLA--AITPSVDQQAYQDRLDHELTVIDQMGFDDYFLIVWDVMNFAHE 343

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLN  R +MPD D+D   +RR++
Sbjct: 344  AQITTGPGRGSAAGSLVAYALNITDVDPLKYDLLFERFLNAKRANMPDIDLDIPDNRREQ 403

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V+ YV +KYGH+RVAQIITFG+L AK ALRDVGR   +   ++      IPN     +  
Sbjct: 404  VLNYVHDKYGHDRVAQIITFGTLAAKQALRDVGRVFGLSTYEMSDWSAAIPNQLHITLDQ 463

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                   R +           L E +++LEGL RH STHAAG+V+  +PL Q+VP+    
Sbjct: 464  A-YQGSQRLQNLVADSSKNKLLFETARRLEGLPRHYSTHAAGVVLSQKPLIQIVPLQ-AG 521

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHET 608
               + +TQ+    +E  GL+K DFLGL+ L+L+  +L +   Q G  + ++ I  +D  T
Sbjct: 522  SETMMMTQYTKDTVEAVGLLKMDFLGLRNLSLMASALHYVQRQTGKPLAITKIDLNDPAT 581

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T G+FQ ES+G+R  L  + PD  E + A+ +LYRPGP++NI  +  RK G+
Sbjct: 582  LKLFQAGDTTGVFQFESAGIRNVLRRLHPDNFELVAAVNALYRPGPMENIDHFIARKQGQ 641

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E +      + P+L  T G+++YQEQVMQ+A ++ G++L EAD+LRRAM KK +  +DK 
Sbjct: 642  EPVSYPAEQLAPILGPTYGILVYQEQVMQVAAVMGGFTLGEADLLRRAMSKKKRAVIDKM 701

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +++FI+GA +NG S+ +A  +++ + +FA+YGFN+SHA AY+ ++++ A++K HY   F 
Sbjct: 702  RQQFIAGAQQNGYSEAVATQVYQYIEQFANYGFNRSHAIAYSKMAFELAYLKVHYSGAFF 761

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             + M   + N  K+K++  +ARQ  + I+PP +N     F      I + L++IKG+   
Sbjct: 762  TSLMNSVLGNGTKLKQYLAEARQHQVAIIPPDINRSGQYFDWNGQAIVFGLSSIKGLRRD 821

Query: 849  TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
                +++   A+ PF SL+ F  R+D+K L   ++++L++AGA D FG +R +LL S+  
Sbjct: 822  FIASVLDERQANGPFKSLQQFMQRIDAKWLKADLMDALIYAGAFDHFGLNRAELLTSVPE 881

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +   A            ++F            ++K    +   R   E   LG Y SGHP
Sbjct: 882  LMSSA-----ELAGGSMSLFESL------APKIKKQPELSLGERLAKEAEYLGVYVSGHP 930

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            ++ Y   L +                  ++   +   +  +T++G  + + T S+ + E 
Sbjct: 931  VETY-DWLAQQRHTQL--VSTLTSEQPAQILVYITKVRTIRTKRGQPMAFATGSDLSGEI 987

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 988  DLTIFP 993


>gi|310830390|ref|YP_003965491.1| hypothetical protein PPSC2_p0029 [Paenibacillus polymyxa SC2]
 gi|309249857|gb|ADO59423.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
          Length = 1305

 Score =  605 bits (1560), Expect = e-170,   Method: Composition-based stats.
 Identities = 354/1064 (33%), Positives = 555/1064 (52%), Gaps = 70/1064 (6%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  HS YSLL+G   +++I+ K         AITD   +F  LE+ ++   AG  PI+G 
Sbjct: 151  LHRHSGYSLLDGGSKISDIVRKTEYAG----AITDHGAMFGTLEYYKQMRKAGKLPILGF 206

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +             +          ++LL    EG++ L++L S+    +   +   +  
Sbjct: 207  EAY----------AETIQGEKKGNHLLLLAKNEEGFKNLVKLTSKS--QENFFRKPHVNY 254

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGY 192
              L   G +G+I  T      + +    N  + A+       ++FG +  YV LQRH   
Sbjct: 255  DMLGTYG-KGIISSTSCMGSEVSQLLLKNKYEDAKYVAKALAEIFGKEDYYVELQRHGFD 313

Query: 193  DRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-P 250
            +      Q++Q+A   +L ++ T +S +  +ED   H+VL+ +     +S  DR +    
Sbjct: 314  EERIVNPQLIQIARELDLKIIGTTDSHYTEKEDAYDHEVLLCIGTVKKMSDYDRMQFPGT 373

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSF-ILQVHAPILPRFIEKECDDIQKEEEN 309
             ++L    E+  +FSD+PEALENT+EIA +CS   L+++   +P+F           E +
Sbjct: 374  GYHLHTSDEVEELFSDIPEALENTLEIAEKCSGLTLEMNKVYMPKFNVPAPFV---NEMD 430

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L++ A  G + R            ++YR+RL FEL VI  M F GYFLIV DF+ +AK+
Sbjct: 431  YLKHLAWQGFKERFEG----TEKDNEEYRERLTFELEVIKGMGFPGYFLIVGDFVDFAKR 486

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I VGPGRGS  G++TAY L ITD+DP+   LLFERFLNPDR+SMPD D+DF  DRR+E
Sbjct: 487  KGILVGPGRGSVVGALTAYCLHITDLDPIPLGLLFERFLNPDRVSMPDIDMDFPDDRREE 546

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI YV+NKYG   V++IITFG++ A+AA++DVGR L  P S   ++ K IP  P   +  
Sbjct: 547  VIDYVKNKYGEHAVSRIITFGTMAARAAIKDVGRVLDYPVSMTAKIAKSIPAVPKMTIKK 606

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM---- 545
                +   F +    +  V ++++I+ KLEGL RHAS HA G+VI    +S  +P     
Sbjct: 607  A-FKESPEFLKMYETEADVKKIVDIAMKLEGLPRHASMHACGVVIAPSSISDYIPEILME 665

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSL 600
             ++ +     TQFNM   E+ G++K DFLGL+T+T++ KSL  +  R ++          
Sbjct: 666  NKETKLKERTTQFNMAECEEMGILKMDFLGLRTMTVISKSLSNVNPRRIREGKKPLHYLD 725

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC----------IEDIIALVSLY 650
            IP +D   Y  +    + G+FQLES GMR  ++ +  D            E +IA VSLY
Sbjct: 726  IPLNDKRVYQDIAKGESYGVFQLESGGMRSFMKELFADALQTGENTMELFERLIAGVSLY 785

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP+D I  Y       E I   HP +  +L+ T GVI+YQEQ M I + L+ ++  EA
Sbjct: 786  RPGPLDYIPDYLKNMQNPENIQYDHPKLKSILEFTYGVIVYQEQCMFIVRELADFTKGEA 845

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D +R+A  KK ++ +    E+F++G  K GIS+ +A  I+  + KF +Y FNKSHA AY+
Sbjct: 846  DNVRKAFSKKKEKMIKPLGEKFVAGCLKKGISQEVAERIWGKMRKFGEYAFNKSHAGAYS 905

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            V+S  TAW+K +YPVEF+ A +   ++  +K+K F    ++  I+I+PP V+     F V
Sbjct: 906  VLSVVTAWLKFYYPVEFMTAVLNSYINKADKLKLFLSVVKKMKIEILPPDVDRSGQMFTV 965

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR-VDSKKLNRRVLESLVFAG 889
              +RI + L  IKG+G  +   I E +A+  F+  +D   R     K+++++LE++V++G
Sbjct: 966  DGDRIRFGLQGIKGLGKASENVIEERAANGEFEDFQDLAERMAKHSKVDKKILEAMVYSG 1025

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENS 948
            ++D F  +R   L+ LD I   A   +K   +   ++F+  E+     KI +      + 
Sbjct: 1026 SVDSFPGTRSAKLEVLDKILASASDEKKMHNSGQMDLFSMYEEFKVYKKIVIPDKKEFHK 1085

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRK-----MGIKGYEESVA--------------T 989
              + E E+   GFY S HPLD Y     +     +G   +EE                  
Sbjct: 1086 KFKLEKEKEYAGFYISEHPLDEYASYFAREGVYEIGFIKHEEDEDETIEVEGEVFGGDTN 1145

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSEPAKEYEANFF 1032
              G  +++A ++   +   T++  + +   T  +   E +   F
Sbjct: 1146 YDGEVVKVAGIITDLKTFYTKRDQKELKVFTLEDRTGEMKVVCF 1189


>gi|28378550|ref|NP_785442.1| DNA-directed DNA polymerase III, alpha chain [Lactobacillus plantarum
            WCFS1]
 gi|28271386|emb|CAD64291.1| DNA-directed DNA polymerase III, alpha chain [Lactobacillus plantarum
            WCFS1]
          Length = 1116

 Score =  605 bits (1560), Expect = e-170,   Method: Composition-based stats.
 Identities = 324/1026 (31%), Positives = 520/1026 (50%), Gaps = 39/1026 (3%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V LQV S++SLL    +++ ++          +A+TD + ++  ++F      A I PI
Sbjct: 4    YVPLQVLSTFSLLHSTSTVSELVQTAKQQGYSTLALTDVDIMYGIVDFYNACRQAEITPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  L++           G+       S+V+L     GYQ L+ L +          S+ 
Sbjct: 64   LGITLNL----------LGRELTAQTFSLVVLAKDQAGYQNLMRLSTMKQTATDAGLSLT 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
              L +L       L++LT      +      N+++ A   + T ++      LY+ +   
Sbjct: 114  AVLPYL-----NHLMVLTPAKDSELAALLLQNTAERAADWITTLRQAVDSASLYLGISLD 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
            +       + +   A  H+LP+VA +   ++  +DY A  VL A+     + Q +  +  
Sbjct: 169  QAP--ALRTTMTAFAQQHQLPVVALDPVDYVQAKDYFAVSVLRAIDRGQQIEQPESLQGI 226

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               +    +  V         L   V      +   QV        + +      +    
Sbjct: 227  EGSHCLRPANTV-TADYEQLGLTTAVAATAEIAAQCQVELQFQQPQLPQFPTPAGQPANV 285

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR    AGL  RLA  AI      Q Y+ RLD EL VI +M F  YFLIV D + +A +
Sbjct: 286  YLRQLCTAGLTERLA--AITPSVDQQAYQDRLDHELTVIDQMGFDDYFLIVWDVMNFAHE 343

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLN  R +MPD D+D   +RR++
Sbjct: 344  AQITTGPGRGSAAGSLVAYALNITDVDPLKYDLLFERFLNAKRANMPDIDLDIPDNRREQ 403

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V+ YV +KYGH+RVAQIITFG+L AK ALRDVGR   +   ++      IPN     +  
Sbjct: 404  VLNYVHDKYGHDRVAQIITFGTLAAKQALRDVGRVFGLSTYEMSDWSAAIPNQLHITLDQ 463

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                   R +           L E +++LEGL RH STHAAG+V+  +PL Q+VP+    
Sbjct: 464  A-YQGSQRLQNLVADSSKNKLLFETARRLEGLPRHYSTHAAGVVLSQKPLIQIVPLQ-AG 521

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHET 608
               + +TQ+    +E  GL+K DFLGL+ L+L+  +L +   Q G  + ++ I  +D  T
Sbjct: 522  SETMMMTQYTKDTVEAVGLLKMDFLGLRNLSLMASALHYVQRQTGKPLAITKIDLNDPAT 581

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T G+FQ ES+G+R  L  + PD  E + A+ +LYRPGP++NI  +  RK G+
Sbjct: 582  LKLFQAGDTTGVFQFESAGIRNVLRRLHPDNFELVAAVNALYRPGPMENIDHFIARKKGQ 641

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E +      + P+L  T G+++YQEQVMQ+A ++ G++L EAD+LRRAM KK +  +DK 
Sbjct: 642  EPVSYPAEQLAPILGPTYGILVYQEQVMQVAAVMGGFTLGEADLLRRAMSKKKRAVIDKM 701

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +++FI+GA +NG S+ +A  +++ + +FA+YGFN+SHA AY+ ++++ A++K HY   F 
Sbjct: 702  RQQFIAGAQQNGYSEAVATQVYQYIEQFANYGFNRSHAIAYSKMAFELAYLKVHYSGAFF 761

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             + M   + N  K+K++  +ARQ  + I+PP +N     F      I + L++IKG+   
Sbjct: 762  TSLMNSVLGNGTKLKQYLAEARQHQVAIIPPDINRSGQYFDWNGQAIVFGLSSIKGLRRD 821

Query: 849  TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
                +++   A+ PF SL+ F  R+D+K L   ++++L++AGA D FG +R +LL S+  
Sbjct: 822  FIASVLDERQANGPFKSLQQFMQRIDAKWLKADLMDALIYAGAFDHFGLNRAELLTSVPE 881

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +   A            ++F            ++K    +   R   E   LG Y SGHP
Sbjct: 882  LMSSA-----ELAGGSMSLFESL------APKIKKQPEISLGERLAKEAEYLGVYVSGHP 930

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            ++ Y   L +                  ++   +   +  +T++G  + + T S+ + E 
Sbjct: 931  VETY-DWLAQQRHTQL--VSTLTSEQPAQILVYITKVRTIRTKRGQPMAFATGSDLSGEI 987

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 988  DLTIFP 993


>gi|117928203|ref|YP_872754.1| error-prone DNA polymerase [Acidothermus cellulolyticus 11B]
 gi|117648666|gb|ABK52768.1| error-prone DNA polymerase, DnaE-like protein [Acidothermus
            cellulolyticus 11B]
          Length = 1090

 Score =  605 bits (1560), Expect = e-170,   Method: Composition-based stats.
 Identities = 279/1035 (26%), Positives = 476/1035 (45%), Gaps = 61/1035 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L  HS++S L+GA     ++++ A      +A+TD +  +  + F++ A   G++ 
Sbjct: 55   RYAELHCHSNFSFLDGASHPEELVEEAARLGLETLALTDHDGFYGVVRFAEAAAELGVRT 114

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            + G +L + +     +  +     P    +++L    EGY+RL   +S  +L   GK   
Sbjct: 115  VFGAELSLSL-----VEPRAGAVDPDAVHLLVLARDPEGYRRLAVAMSAAHLRGGGKGRP 169

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            +   + L        ++LTG   G + RA        A + +    ++FG + + V L  
Sbjct: 170  QYDETELAHTAGGHWLILTGCRKGRVRRALAAEGPDGAVREIDRLVEMFGRENVAVELTD 229

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEE-DYEAHDVLMAVAHSTVVSQKDRP 246
                 D      +   A    LP+VAT N+ + + +    A  +    A  ++       
Sbjct: 230  DGQPLDSAANDVLAAAAVRCGLPVVATTNAHYATPDRGRLAAALAAVRARKSLDEIAGWL 289

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               P  +L++  EM   F+  P A+ N   +   C+F +++ AP LP F           
Sbjct: 290  PAAPVRHLRSGVEMAQRFARYPGAVANAARLGAACAFDVRLIAPRLPDFPVPPG----HT 345

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E + LR  A+ G   +         +   D  ++LD+EL+VI ++ F GYFL+V + +++
Sbjct: 346  EMSYLRELAMRGAAEKYGPP-----HQRPDVYRQLDYELDVIEQLGFPGYFLVVWEIVEF 400

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             +   I    GRGS A SV  Y L IT  DP+ F LLFERFL+P+R   PD D+D    R
Sbjct: 401  CRSRGIL-CQGRGSAANSVVCYVLGITKADPIAFRLLFERFLSPERDGPPDIDVDIESGR 459

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+YV ++YG ER AQ+ T  + + ++A+RD+ RAL     Q D   K +      P
Sbjct: 460  REEVIQYVYSRYGRERAAQVATVITYRPRSAVRDMARALGYSPGQQDAWSKQLDRYGEIP 519

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                        R +       D ++ +++++ G  RH   H+ G+VI DRP++++ P+ 
Sbjct: 520  ------------RGSEADHDVPDDVVHLARQVLGFPRHLGIHSGGMVICDRPVAEVCPVE 567

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDD 605
                    V Q++     + G++KFD LGL  L+ L++  D +    GV++ L  IP +D
Sbjct: 568  WARMPGRSVLQWDKDDCARIGVVKFDLLGLGMLSALRECFDLIETYHGVRLSLETIPPED 627

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNN 663
               Y +L    ++G+FQ+ES      L  +QP    D++  V++ RPGPI   ++  +  
Sbjct: 628  PAVYDMLCAADSVGVFQVESRAQMATLPRLQPRNFYDLVTEVAIIRPGPIQGGSVHPFIR 687

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            R+ G+E +   HPL+   L+ T GV ++QEQ+MQ+A  ++G + +EAD LR+AM  K+  
Sbjct: 688  RRRGREPVRYAHPLLRHSLERTYGVPLFQEQIMQMAIDVAGLTPAEADHLRQAMGAKRSV 747

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E M++ K +  +G ++NGI+  +A  I+E L  FA +GF +SHA ++A + Y +AW+K +
Sbjct: 748  ERMERLKAKLYAGMARNGITGAVADEIYEKLQAFAHFGFPESHAISFAFLVYASAWLKKY 807

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----DNRIYYS 838
            YP  F AA +          +    DAR+  + I  P V +      +        +   
Sbjct: 808  YPAAFCAALLNAAPLGFYSPQTVVADARRHGVVIRRPCVASSATKTILEPMDGGWAVRLG 867

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L+ +KGV   TA  I+      P+  + D   R +   L+   LE+L  AGA +CFG  R
Sbjct: 868  LSLVKGVSAETADRIVARR---PYRDMADLARRCE---LSVTHLEALAAAGACECFGLDR 921

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             Q L    +                   F  E        T  +            + R 
Sbjct: 922  RQALWLAGSA--------AETRPGQLEGFGVEA-------TPPRLPPMTEMETTVTDLRF 966

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG     +P    +  L +MG+    +       + + +  +V   Q+  T +G+   ++
Sbjct: 967  LGISPDVYPTAHVRDQLTEMGVVPAAQLHRVAPDSRVLVGGVVTHWQRPATARGT--TFL 1024

Query: 1019 TFSEPAKEYEANFFP 1033
               +          P
Sbjct: 1025 NVEDETGMVNVICSP 1039


>gi|163791498|ref|ZP_02185904.1| DNA-directed DNA polymerase III, alpha subunit [Carnobacterium sp.
            AT7]
 gi|159873221|gb|EDP67319.1| DNA-directed DNA polymerase III, alpha subunit [Carnobacterium sp.
            AT7]
          Length = 1112

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 339/1028 (32%), Positives = 543/1028 (52%), Gaps = 46/1028 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV LQV SSYSLL+  +++  ++ K       AIA+TD N L+  ++F +      I+P
Sbjct: 2    SFVQLQVISSYSLLQSTVTIEALVLKAKERGYKAIALTDYNILYGIVDFYKMCKKHHIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G  LD+           G        SI+LL   A GY+ L+ L S   LL + +   
Sbjct: 62   LLGLTLDV----------GGIIKTDENHSILLLAKNAAGYESLLTLSSEKMLLAETE--- 108

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
            R+ +  ++E  +  LI +T G  G ++     N  + A   +  ++ LF +R  Y+ +Q 
Sbjct: 109  RLTIDQIKE-HSRNLIAVTPGEKGEVEHFLLQNEKKAAAAVVEKWQALFPERQFYLGVQL 167

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            H+      +  + +LA       VA  +  ++   D  +  VL A+    V+  +    +
Sbjct: 168  HQNLLP-IKDALTELAKETGTLPVALQDVRYIDATDDFSTRVLRAINKGEVLETQHAAVI 226

Query: 249  TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               +  ++         +   EA + T +IA      + ++  +LP+F        +K  
Sbjct: 227  GEYYLPESSQAEKRFIDNGLKEAAQRTNDIANMIDVEIALNQQLLPKFPLP----TEKTT 282

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+ + + GLE R+++         + Y  RL++EL VI +M F  YFLIV D + +A
Sbjct: 283  TEFLKEQCLVGLEKRVSE-------PDKRYTDRLEYELTVIGKMGFEDYFLIVWDVMAYA 335

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             K  I  G GRGS AGS+ AY L ITD+DP+ + LLFERFLN +R +MPD D+DF  +RR
Sbjct: 336  HKVKIVTGAGRGSAAGSLVAYLLEITDVDPIEYDLLFERFLNEERYTMPDIDLDFPDNRR 395

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +++++YV+NKYG   VAQI TFG+L AK AL+DV R   +  S+     K IP+     +
Sbjct: 396  EDILQYVKNKYGKNHVAQIATFGTLAAKMALKDVSRVFGLSPSEASVWSKAIPSVLGITL 455

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                       R     +     L E ++K+EGL RH STHAAG+VI D+PL+  VP+ +
Sbjct: 456  EKA-FKQSVNLRNLVGENEKNTLLFETAKKIEGLPRHISTHAAGVVISDKPLTHYVPLQK 514

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDH 606
               SD+ +TQ+ M  +E+ GL+K DFLGLK L+++  +L     + G +++L  IP  D 
Sbjct: 515  GG-SDILLTQYPMGNVEEIGLLKMDFLGLKNLSIIDNALKLIQRETGERLNLLNIPMQDQ 573

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            ET  L      +GIFQ ES+G++  L  ++P  +EDI A+ +LYRPGP++ I  +  RK 
Sbjct: 574  ETLQLFRKGDMVGIFQFESAGIKSVLRRLEPTSMEDIAAVNALYRPGPMEQIDTFIKRKK 633

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G   I   H  +  +L  T GV++YQEQVMQ+A  + GY+L +AD+LRRA+GKK K  +D
Sbjct: 634  GLLPIEYPHETLSEILSVTYGVMVYQEQVMQVASKMGGYTLGQADILRRAIGKKQKSVID 693

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K+++ F SGA+K G S  +A+ +++ + +FA+YGFN+SHA AY+ I+YQ A++K HYP  
Sbjct: 694  KERQHFTSGAAKLGYSPEVAIQVYDYIERFANYGFNRSHAVAYSFIAYQMAYLKAHYPHA 753

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  A +   ++N  K+K +  +A++ NI+++ P +N     F +   +I +  ++IKG+ 
Sbjct: 754  FFVALLNSALNNSAKMKDYIIEAKKRNIKVLSPDINASFGGFSLVKGQILFGFSSIKGLR 813

Query: 847  TTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  ++    +   +  L DF  R++ K L    ++ L++ GA D F YSR  LL S+
Sbjct: 814  RDMIDDMVTNRKNDGSYKDLIDFLKRLNKKWLKPEYIKPLIYVGAFDQFEYSRGTLLASI 873

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            + I +       + +  +  +F         K   E  S      + ENE+  LG Y SG
Sbjct: 874  EGIIQSV-----HMSGNNSGLFELL------KPKYEFASDLTIEEKLENEELFLGTYLSG 922

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP + Y  +     I    E +    G   R+   + +  +  T+KG  + +VT S+ + 
Sbjct: 923  HPTEKYDSVRPWKQIVYVNELI---IGKTSRVIGSIKNIHKITTKKGEPMAFVTISDTSG 979

Query: 1026 EYEANFFP 1033
            +     FP
Sbjct: 980  DCSLTLFP 987


>gi|254874369|ref|ZP_05247079.1| dnaE, DNA polymerase III alpha subunit [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254840368|gb|EET18804.1| dnaE, DNA polymerase III alpha subunit [Francisella tularensis
           subsp. tularensis MA00-2987]
          Length = 941

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 368/956 (38%), Positives = 551/956 (57%), Gaps = 37/956 (3%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           HL+VH+ YS+++  + L ++  +       A+A+TD  NLF+A++F ++A A+GI+PI G
Sbjct: 4   HLRVHTGYSVVDSTVRLGDLFARAKDKNIVAVALTDVCNLFAAVKFYKQALASGIKPIFG 63

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRI 131
            +L +D +  +               +VLL    +GYQ +++LVS+ Y   D+      I
Sbjct: 64  VELKVDTEFGI-------------CDLVLLAENNQGYQNIVKLVSKAYQEADRFGSIPLI 110

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR 190
             SWL E+  E +I L GG  G + +A        A++ +    ++FG +   + + +  
Sbjct: 111 PKSWLSEVKLESVICLNGGQQGELGKAILAKDYIKADEIIKQNIEIFGTNNYIIEIHKLE 170

Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RV 248
              +     + ++ A  + L  VATN ++F+  +DY+ H++   +   T +  + R  + 
Sbjct: 171 YENEGLYNEKALEYASKYNLIAVATNLTVFMEADDYDIHEIRACINEKTTILDESRKSKF 230

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
           T + YLK+  EM   FS LP  ++NT+ IA+RC+   ++  P LP             E+
Sbjct: 231 TKEQYLKSADEMYETFSALPVLVDNTLAIAKRCNVTFELGKPCLPTVNIPAG----LTEK 286

Query: 309 NELRNKAVAGLEVRLAQG-----AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                    GL+ RL +      A    +  + Y+ RL  E+++I  M F GYFLIV DF
Sbjct: 287 EYFSKLCYQGLDKRLEKILENRSADKHEHIIKVYKDRLQREIDIICDMGFPGYFLIVEDF 346

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           I+W+K+N+IPVGPGRGSGAGS+ AY+L ITDIDPL + LLFERFLNP+R+SMPDFDIDFC
Sbjct: 347 IRWSKENDIPVGPGRGSGAGSLVAYSLLITDIDPLPYGLLFERFLNPERVSMPDFDIDFC 406

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RD VI+YV+ KYG E VAQIIT+G++ AK  +RDV R +   +   DR+ KLIP  P
Sbjct: 407 IQGRDRVIKYVEQKYGKESVAQIITYGTMAAKGVVRDVVRVMGQSFGFGDRIAKLIPETP 466

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                 + + +     E   AD  V  ++E +QKLEGL R    HAAGIVI    +S   
Sbjct: 467 GTTFK-KILHEGETLYEEVQADEDVAEIIEKAQKLEGLPRSLGKHAAGIVISPTKISDFA 525

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD----LS 599
           P+Y + +    VTQF+   +E  GL+KFDFLGLK LT++  ++  +  +         ++
Sbjct: 526 PVYCENKGGDIVTQFDKGDVEDVGLVKFDFLGLKNLTIINNTVKSINAKRPADQKPLDIA 585

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            IP DD +T+ LL    T GIFQLES GMRQ ++ +     E+IIALV+LYRPGP++NI 
Sbjct: 586 DIPLDDQKTFKLLQAGNTTGIFQLESQGMRQIVKDLGTSNFEEIIALVALYRPGPMENIP 645

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            + +RK+ +++I  +HPL++ +LKET G+ +YQEQVMQ+AQ L+GY+L  AD+LRRAMGK
Sbjct: 646 TFIDRKHSRKQITYLHPLLEGVLKETYGIPVYQEQVMQMAQKLAGYTLGGADLLRRAMGK 705

Query: 720 KIKEEMDKQKERFIS-GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           K  EEM+KQ++ F    A  + I   +A  IF+ +  FA YGFNKSHAAAYA+I+YQTAW
Sbjct: 706 KKPEEMEKQRKIFKEGAAKHHNIDTKLADEIFDQMEAFAGYGFNKSHAAAYALIAYQTAW 765

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-KVGDNRIYY 837
           +K HYP E++AA M+ +M N +++ KF  D +  +I ++ P+VN    D   V    I  
Sbjct: 766 LKAHYPDEYMAALMSGDMGNTDQLVKFILDCKNMSITVLAPNVNKSVYDCIAVSKGTILL 825

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            L AIKG+G    + I+        F S+ D C RVD +K+N++ LE+L +AGA+     
Sbjct: 826 GLGAIKGLGGEAIKSILTERDIAGEFSSIFDLCRRVDLRKVNKKALEALCYAGAIKDISK 885

Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK---FSVENSS 949
           +R     S++   K A +V +      +++F   +        LE+       N  
Sbjct: 886 NRATAFNSIEKAIKNAGYVNEMNAAGQDDLFGFTEQESDTDAELERECIVEEWNLK 941


>gi|170697435|ref|ZP_02888526.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria IOP40-10]
 gi|170137614|gb|EDT05851.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria IOP40-10]
          Length = 1049

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 281/1044 (26%), Positives = 464/1044 (44%), Gaps = 77/1044 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A AA + 
Sbjct: 10   PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAANMP 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG    +   D                    L    +GY  L E +S   +  + K +
Sbjct: 70   LIIGSHFRLTAADGAPALA-----------FTALAMNRDGYGNLCEFISLGRMRGK-KGT 117

Query: 129  VRICLSWLQEIGT---------EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             R+    ++             + + +L+           F  + Q  + ++  F ++FG
Sbjct: 118  YRLAPLDVEHPEAPFTHLRTLPDCIAILSPD---------FPANEQRLDAQVEWFARVFG 168

Query: 180  DRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            DR +V L  H R  D      V ++A  H +P+VAT+  L          DVL  +    
Sbjct: 169  DRAWVALTLHARAMDDIHRGVVERVAARHGVPVVATSWPLMHVRSRKPLQDVLTGIRVGR 228

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
             V  +    + P+     RS +         ALE TV +ARRC+F L       P  +  
Sbjct: 229  PV-TECGYELAPNAERHLRSRLRLANLYPAGALEETVRVARRCTFSLDDLKYEYPDELVP 287

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
               D        LR +   G   R   G         D + +++ EL +IA +K+  YFL
Sbjct: 288  AGTD----ATTYLREQTYIGARRRFPAG------IPIDVQAQIEHELQLIADLKYEAYFL 337

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
             V D +Q+A++  I    GRGS A S   Y L +T++DP R S+LFERF++ +R   PD 
Sbjct: 338  TVYDIVQFAREQGIL-CQGRGSAANSSVCYCLGVTEVDPSRQSMLFERFISKERNEPPDI 396

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF   RR+EV++Y+  KYG +R A      + + ++ALR+ G+AL +  + VDR+ K 
Sbjct: 397  DVDFEHQRREEVMQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDPAIVDRVAKQ 456

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                 +    LQ  A+           P   +    + +L G  RH S H+ G VI    
Sbjct: 457  HHWFDSRADLLQRFAE----AGLDPEAPLNQQWAGFAAQLLGYPRHLSQHSGGFVISRGK 512

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVD 597
            L++LVP+      D  + Q++   IE  G++K D L L  L++++++LD +  +RG   +
Sbjct: 513  LTRLVPVENAAMEDRSIIQWDKDDIEALGILKIDVLALGMLSMVRRALDMISEKRGETFE 572

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  IP +D  TY +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGP+  
Sbjct: 573  LEDIPAEDMATYDMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIVRPGPVQG 632

Query: 658  IVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V+   +  +  E +      ++  L  T GV I+QEQVMQ+A L +G+S  EAD LRR
Sbjct: 633  GMVHPFLRRRQGLEPVTFPSEGMEKALARTLGVPIFQEQVMQVAMLAAGFSAGEADQLRR 692

Query: 716  AMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AM     K  ++   ER +SG  + G  +  A +IF  +  F +YGF +SHAA++A++ Y
Sbjct: 693  AMAAWKRKGGLEPYHERLVSGMLERGYDREFAESIFAQIKGFGEYGFPESHAASFALLVY 752

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             +AW++ H P  FLAA +  +        +  QDAR+  ++++P  VN    D  +    
Sbjct: 753  SSAWLRRHEPGVFLAALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWDSAIEGPT 812

Query: 835  ----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                +    + ++G+    A  +  A A +PF  + D   R    +L+R  L+ L  A A
Sbjct: 813  TSAPVRLGFSLLRGMREDVAGRVELARAARPFVDVADLARRA---RLDRHDLQVLARANA 869

Query: 891  LDCF-GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            L    G +R             A            ++    +   +    +      +  
Sbjct: 870  LRSLAGGNRR------------AALWLAAAAVPDRDLLRGTERDDA----VPALPQASEG 913

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 + R +GF    HPL + +  L    ++  ++      G   R   +V  +Q+  T
Sbjct: 914  KEIVTDYRAMGFTLGRHPLALLRDRLTLDRLQPADQLATLRSGQLARACGLVTVRQRPGT 973

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
              G  + ++T  +   +     +P
Sbjct: 974  ANG--VLFMTLEDETGQVNVILWP 995


>gi|111023190|ref|YP_706162.1| error-prone DNA polymerase [Rhodococcus jostii RHA1]
 gi|110822720|gb|ABG98004.1| DNA-directed DNA polymerase alpha subunit (DNA polymerase III alpha
            subunit) [Rhodococcus jostii RHA1]
          Length = 1084

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 268/1031 (25%), Positives = 448/1031 (43%), Gaps = 70/1031 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS++S L+GA     ++++       AIA+TD +  +  + F++ A    ++  
Sbjct: 61   YAELHAHSAFSFLDGASPPEELVEEAVRLGLEAIALTDHDGFYGVVRFAEAAKELNMRTA 120

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +D                    +++L    EGY+RL   ++  +L    K  +R
Sbjct: 121  FGSELTLDDA-----------------HLLVLARGQEGYRRLSREIAAAHLAGGEKGKLR 163

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
              L  L +       +LTG   G + +A        A  RL      FG DR+ V L  H
Sbjct: 164  YDLDRLTDAAGGHWQILTGCRKGHVRQALAAGGPDAAAARLRELIDRFGADRVTVELTHH 223

Query: 190  RG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                D  R + + +LA  H LP++A+  + F           + AV     +        
Sbjct: 224  GIAEDAERNASLAELAQQHGLPVIASTAAHFAGPPRRRLAMAMAAVRARQSLDDAAGHL- 282

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                            + L  A    V  A            ++   +          E 
Sbjct: 283  --APAGGAHLRSGEEMAHLFAAYPEAVRGAADLGRECAFDLRLIAPQLPPFDVPDGHTEA 340

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR   + G   R      A     + YRQ ++ EL++I  + F GYFL+V D + + K
Sbjct: 341  SWLRQLTMDGARRRYG----APADRPEAYRQ-IEHELDIITGLNFPGYFLVVHDIVSFCK 395

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N+I    GRGS A S   YA+ IT++DP+R  LLFERFL+P+R   PD D+D   DRR+
Sbjct: 396  NNDIL-CQGRGSAANSAVCYAIGITNVDPVRNKLLFERFLSPERDGPPDIDVDIESDRRE 454

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E I++V  KYG +  AQ+    + + K+++RD+ RAL     Q D   K +         
Sbjct: 455  EAIQHVYAKYGRQYAAQVANVITYRGKSSVRDMARALGFSQGQQDAWSKQVSRWGGIGKE 514

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                          +       +LE++ ++EG  RH   H+ G+VI DRP++ + P+   
Sbjct: 515  --------------VGTDIPPAVLELAAQIEGFPRHLGIHSGGMVICDRPIADVCPVEWA 560

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
               +  V Q++       GL+KFD LGL  L+ L   +D +A+   ++VDL+ +   +  
Sbjct: 561  RMENRSVLQWDKDDCAAVGLVKFDMLGLGMLSALHYMIDLVAEHKGIEVDLAQLDLSEEA 620

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRK 665
             Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y  R+
Sbjct: 621  VYEMLQRADSVGVFQVESRAQMATLPRLKPRNFYDLVVEVALIRPGPIQGGSVHPYIRRR 680

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEE 724
            N  E +   HP ++  LK T GV ++QEQ+MQ+A  ++G+S +EAD LRRAM  K+  E+
Sbjct: 681  NKLEPVTYDHPSLEKALKRTLGVPLFQEQLMQMAVDVAGFSPAEADQLRRAMGSKRSPEK 740

Query: 725  MDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            M++ + R   G  + +GI   +A  I+E L  FA++GF +SH+ ++A + + ++W K H+
Sbjct: 741  MERLRGRLYQGMRELHGIGDDVADRIYEKLYAFANFGFPESHSQSFAALVFYSSWFKLHH 800

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIYYSLAA 841
            P  F A  +  +       +    DAR+  + +    +N       V      +   L  
Sbjct: 801  PAAFCAGLLRAQPMGFYSPQSLVADARRHGVPVHGADINASLAHATVEAGGTEVRLGLGE 860

Query: 842  IKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            ++ +GT  A  I+E+  D  P+ S  D   RV+   L+    ESL  AGALD FG SR +
Sbjct: 861  VRHIGTALAERIVESRGDGGPYTSFLDLTGRVE---LSTAQAESLATAGALDSFGLSRRE 917

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             L +       A    ++R                           +       +    G
Sbjct: 918  ALWA----AGAAAGERRDRLPG-----------IGASTRAPTLPGMSDLELAAADVWATG 962

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
                 +P    +P L  +G+      +    G+ + +   V  +Q+  T  G  + ++  
Sbjct: 963  VSPDTYPTQFLRPQLDALGVIPAAGLLDVPDGDRVLVGGAVTHRQRPATAAG--VTFINL 1020

Query: 1021 SEPAKEYEANF 1031
             +         
Sbjct: 1021 EDETGMVNVVC 1031


>gi|134103090|ref|YP_001108751.1| error-prone DNA polymerase [Saccharopolyspora erythraea NRRL 2338]
 gi|291003967|ref|ZP_06561940.1| error-prone DNA polymerase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915713|emb|CAM05826.1| DNA polymerase III, alpha subunit, putative [Saccharopolyspora
            erythraea NRRL 2338]
          Length = 1056

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 283/1038 (27%), Positives = 455/1038 (43%), Gaps = 66/1038 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS++S L+GA     ++ + A     AIA+TD + ++  + FS+ A   G++ +
Sbjct: 19   YAELHAHSNFSFLDGASHPEELVAESARLGLEAIALTDHDGMYGVVRFSEAAAEHGVRTV 78

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L + +        Q   P P    +++L     GY RL   +S   L  Q K    
Sbjct: 79   FGAELSLGL-----TAAQTGVPDPEGNHLLVLARDPGGYARLCREISSAQLAGQEKGRPT 133

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRH 189
              L  L E   +  ++LTG   G +  A        A   L     LF G+ + V L   
Sbjct: 134  YRLEQLAEAAEDHWLVLTGCRKGAVRSALAEGGPAAAAAELDRLVALFGGENVAVELTDQ 193

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQKDRPR 247
                D  R   +  LA    LP VATN + F    +     V+ A+     +        
Sbjct: 194  DLPTDSERNDVLFALARDAGLPAVATNGAHFAGPWNGRMASVVAAIRARRGLDEMDGWLP 253

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                ++L++  EM   F+  P A+E    + R C+F L++ AP LP F   E     + E
Sbjct: 254  AWAGNHLRSGEEMAERFARYPGAVETAARLGRECAFDLRLVAPRLPPFDVPEG----RTE 309

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     G   R                 +++ EL VI ++ F GYFL+V D + + 
Sbjct: 310  AEWLRELTYRGALRRYG-----LPQDNPAAYAQIEHELAVIEKLDFPGYFLVVHDIVSFC 364

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +  I    GRGS A S   +AL IT+ DP+R+ LLFERFL P+R   PD D+D   DRR
Sbjct: 365  GEMGIL-CQGRGSAANSAVCFALRITNADPVRYDLLFERFLAPERDGPPDIDLDIESDRR 423

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +E I+YV  KYG    AQ+    S + K+A+RDV RAL     Q D   K I +    P 
Sbjct: 424  EEAIQYVYRKYGRTHAAQVANVISYRPKSAVRDVARALGYSPGQQDAWSKQIEHWGPLPD 483

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +            +  P                RH   H+ G+VI  +P+S++ P+  
Sbjct: 484  DGEVPDQVRELAGELMGYP----------------RHLGIHSGGMVICHQPVSEVCPVEW 527

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                   V Q++       GL+KFD LGL  L+ L  ++D   +   ++VDL  +   D 
Sbjct: 528  ARMPGRTVLQWDKDDCASVGLVKFDLLGLGMLSALHYAIDLAREHHGIEVDLGELDLADD 587

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664
            E Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y  R
Sbjct: 588  EVYAMLRRADAVGVFQVESRAQLATLPRLKPRKFYDLVVEVALIRPGPIQGGSVHPYIRR 647

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723
            +NG+E     HPL+   L++T GV ++QEQ+MQ+A  ++G+S  EAD LRRAM  K+ +E
Sbjct: 648  RNGEEDWDYEHPLMAAALEKTLGVPLFQEQLMQLAVDIAGFSAGEADELRRAMGSKRSEE 707

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M + + R   G + NGI+  +A  I++ L  FA++GF +SHA ++AV+ + ++W K +Y
Sbjct: 708  RMARLRGRLFEGMAVNGITGELAERIYQQLLAFANFGFPESHALSFAVLVFASSWFKRYY 767

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-------DNRIY 836
            P  F AA +  +       +    DAR+  +++  P VN       +           + 
Sbjct: 768  PAVFCAALLKAQPMGFYSPQSLVADARRHGVRVHGPDVNASRGQADLEPDAESEGGQAVR 827

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              LA+++ +G + A  ++     + P+  + D   R+    LN   +E+L  AGA  CFG
Sbjct: 828  LGLASVRTLGDSVAEQLVAERTENGPYTGMADLSRRMS---LNAAQMEALATAGAFGCFG 884

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             SR + L +                ++ + +        +           +       +
Sbjct: 885  LSRREALWN----------AAAAAGDRPDRLPGTTVSADA-----PPLPGMDGVELAAAD 929

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     +PL   +  L +MG     +      G  + +   V  +Q+  T  G  +
Sbjct: 930  VWATGISPDSYPLQFLRSRLGEMGALSAADLSEVDNGERVLVGGAVTHRQRPATAGG--V 987

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             ++   +          P
Sbjct: 988  TFLNLEDETGMINVVCTP 1005


>gi|67459636|ref|YP_247260.1| DNA polymerase III subunit alpha [Rickettsia felis URRWXCal2]
 gi|75535968|sp|Q4UK40|DPO3A_RICFE RecName: Full=DNA polymerase III subunit alpha
 gi|67005169|gb|AAY62095.1| DNA polymerase III alpha chain [Rickettsia felis URRWXCal2]
          Length = 1207

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 384/1107 (34%), Positives = 579/1107 (52%), Gaps = 105/1107 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  +++  ++++ PAI + D  NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKVVELASSNKMPAICLADKGNLFGSLEFALYAVKKGLQ 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI G  L+I                     I+L+     GY+ L++L S  +  +  K  
Sbjct: 63   PIHGVILNIKYD------------IDIFAQILLIAKDETGYKNLLKLSSLTFTKNDRKLC 110

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I    L E   EGLI L   + G + +     S + A       + + GDR Y  + R
Sbjct: 111  DHIDFEDLIEY-QEGLIALCCYTDGIVGKCLLARSEEQAMLFARKLQDILGDRFYFEIMR 169

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   +    E   +++A    +PLVATN  LF  +  ++AHDVL+ ++        DR  
Sbjct: 170  HDLPEEQFIEDSYIRIAAELAIPLVATNKVLFSEKTMHDAHDVLLCISAGVTKEYPDRKT 229

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+ + Y ++  EM+ +FSDLP A++NTV +  RC F     A      +          E
Sbjct: 230  VSENCYFRSPHEMIELFSDLPSAIQNTVNLRERCYF-----AAHANPPMLPNFATKDISE 284

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360
             + +R  A  GL  RLA    ++    Q       +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285  TDLIRKDAKEGLLARLATKFKSENIPLQNQEELKTEYFARLNYELDIICNMNFAGYFLIV 344

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            +DFI+W+KK  I VGPGRGSGAGSV A++L ITD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345  SDFIKWSKKEGILVGPGRGSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DFCQ+RR+EVI YV++KYG+ RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405  DFCQERREEVINYVRSKYGNNRVGQIITFGKMQAKAVIKDVARVLSLPYKFADYLTELVP 464

Query: 481  NDPAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
                +PVS  QA+ +      A   +           +  +L+ S  LEGL+RH+STHAA
Sbjct: 465  FSAVNPVSLEQAMREVPELANAAKGNGLYNLEGEAELIKLVLDTSLILEGLHRHSSTHAA 524

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            GIVI    L  +VP+Y+D  SD+ V  ++MK+ E AGLIKFDFLGL+TLT++      L 
Sbjct: 525  GIVIAGTDLVDIVPVYKDANSDMLVVGYSMKYSEIAGLIKFDFLGLQTLTVITDCKKLLK 584

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            ++G++VD + + FDD++TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585  EQGIEVDFNNMTFDDNKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            RPGP++NI  Y   K+  ++   +H L+ P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645  RPGPMENIPTYIACKHKLQQPDYLHELLKPILEETYGVVIYQEQVQRIAQILAGYTLGAA 704

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            D+LRRAMGKKIK+EM++Q+E F+ GA  N IS++ A +IF  +AKFA YGFNK+HAAAY 
Sbjct: 705  DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISESQAKSIFATVAKFAGYGFNKAHAAAYG 764

Query: 771  VI-----------------SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
            VI                 +     +  H  +             +        +     
Sbjct: 765  VISYQTAYLKANYPAEFLVACLNLELNNHDKINLFLQEAKDSGIKIIAPNINISEGYFSV 824

Query: 814  IQIMPPSVNTPCVD---------------------------------------------F 828
              ++P +                                                    +
Sbjct: 825  KSVIPQAATCHPQGPLCHPRVGGYPEKVKTVLNHESMKMDSRFCGNDIKGSRNDIEDTGY 884

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                + I ++L AIKGV     + + +       F S+ DF  R+  K +N ++LE+L+ 
Sbjct: 885  DKEKSTIIFALGAIKGVTPNFGKLVTDERKARGAFKSITDFIERLPLKSINSKLLENLIK 944

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            +G  D    +R+QL  S+  +  Y+      + +   ++      + +    L      +
Sbjct: 945  SGCFDELHDNRLQLFSSISKLLAYSASYHAEQESNQFSLIKVSSLSPNI---LIASDYAD 1001

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGN-NIRLAAMVVSKQ 1005
            ++     E   +G + S HPL  Y+ I  ++ I    +       G   + LA ++  K 
Sbjct: 1002 NNTLAFYEFESMGLFISNHPLTQYQEIFSRLNILNTADLHNNLPDGTNRVNLAGVIQKKD 1061

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + + +G R   +  S+P   +E + F
Sbjct: 1062 SRMSARG-RFVTLVLSDPENIFELSIF 1087


>gi|124263148|ref|YP_001023618.1| DNA polymerase III, alpha subunit [Methylibium petroleiphilum PM1]
 gi|124262394|gb|ABM97383.1| error-prone DNA polymerase, DnaE-like protein [Methylibium
            petroleiphilum PM1]
          Length = 1033

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 270/1034 (26%), Positives = 461/1034 (44%), Gaps = 72/1034 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L+  S++S L GA     ++++       A+AITD  ++   +     A   G+ 
Sbjct: 7    PAYAELRCLSAFSFLRGASMPEELVERAKELGYSALAITDECSVAGVVRAHVTAKEQGLP 66

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG Q  ++                   ++V+L  T +GY  L E ++++ +    K +
Sbjct: 67   LIIGSQFQLE---------------DAPFTLVVLAQTLQGYGNLCEFITKLRMAS-PKGT 110

Query: 129  VRICL-SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             R+ L   L     E L+++    +            +   K        F  R ++ ++
Sbjct: 111  YRLQLTDVLPGPLAECLVLVAPDRTAF---------PEELLKVARWMLTHFSGRCWLAVE 161

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
              R   D     ++ +++    +PLVAT +            DV+ A      +      
Sbjct: 162  LLRLLDDEMWLHKLREVSELTAIPLVATGDVHVHVRSRKALQDVMTATRVGKPL-TGCGG 220

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + P+     R+ +    +   E L  T  +A  CSF L       P  +    +     
Sbjct: 221  ALQPNAERHLRTRLRLAQTYPEELLTETSRVASLCSFSLDELKYQYPAEVVPVGE----T 276

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR     G   R  +G  A        + +++ EL +I+ + +  YFL VAD + +
Sbjct: 277  ASSFLRRLTYEGAGRRWPEGMQA------KVQTQIEHELKLISELGYEHYFLTVADIVNF 330

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I    GRGS A SV  Y L +T++DP R S+LFERF++ +R   PD D+DF  +R
Sbjct: 331  ARSRHIL-CQGRGSAANSVVCYCLGVTEVDPARMSVLFERFISKERNEPPDIDVDFEHER 389

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI Y+  KYG  R     T  S + K+A+RDVG+AL      VDR+ K         
Sbjct: 390  REEVIHYLYGKYGRHRAGLTATVISYRPKSAIRDVGKALGFDLETVDRVAKNHMWFEGRQ 449

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            V  + +A+          D +V +LL ++ +L G+ RH S H  G V+   PLS++VP+ 
Sbjct: 450  VLTERMAEV----GLNPEDLAVKQLLALTGQLIGMPRHLSQHVGGFVLTKGPLSRMVPIE 505

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                 D  V +++   ++  GL+K D L L  LT ++KSL+F+ QR   + ++  IP +D
Sbjct: 506  NAAMEDRTVIEWDKDDLDALGLLKVDVLALGMLTAIRKSLEFIGQRKGYRFEMQDIPAED 565

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
             ETY +++   T+G+FQ+ES      L  M+P+C  D++  V++ RPGPI   +V+   N
Sbjct: 566  PETYRMISKADTVGVFQIESRAQMSMLPRMKPECFYDLVIEVAIVRPGPIQGGMVHPYLN 625

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IK 722
            R+ GKE +V     +   L  T GV ++QEQVMQ+A L +G++  EAD LRR+M     K
Sbjct: 626  RRQGKEPVVYPSEALKEALGRTLGVPVFQEQVMQVAILAAGFTPGEADQLRRSMAAWKRK 685

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              +D+   R + G +  G  K  A  IF+ +  F++YGF +SHAA++A++ Y + W+K H
Sbjct: 686  GGLDQYYSRIVDGMTARGYEKAFAEQIFQQIHGFSEYGFPESHAASFALLVYASCWIKCH 745

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----NRIYYS 838
            +P EFLAA +  +        +  QDA++  + + P  V     D  +        +   
Sbjct: 746  HPAEFLAAMLNSQPLGFYTPSQLVQDAKRHGVDVRPVDVMYSDWDCTLEGLPHPPAVRLG 805

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L  + G+   + + ++ A  + PFD+ ED   R     L +  ++ L  A AL      R
Sbjct: 806  LRQVSGLKAESVQRLVAARQEAPFDNAEDLARRA---ALEQHEMKLLAAADALMSLSGHR 862

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             Q +     ++   + +                          +            +   
Sbjct: 863  RQQVWDAAALRSTPKLLR----------------DAPVDEEFLELPEAPEGEEIVWDYAS 906

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             G     HPL + +P L    +   E+      G ++    +V  +QQ  T  G  + +V
Sbjct: 907  TGLTLRRHPLALLRPQLEARRLLTAEQLDRLPNGRHVGTCGIVTLRQQPDTANG--VIFV 964

Query: 1019 TFSEPAKEYEANFF 1032
            +  +     +   +
Sbjct: 965  SLEDETGVVQVICW 978


>gi|328957332|ref|YP_004374718.1| DNA polymerase III subunit alpha [Carnobacterium sp. 17-4]
 gi|328673656|gb|AEB29702.1| DNA polymerase III subunit alpha [Carnobacterium sp. 17-4]
          Length = 1112

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 344/1028 (33%), Positives = 546/1028 (53%), Gaps = 46/1028 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV LQV SSYSLL+   S+  ++ K       AIA+TD N L+  ++F +      I+P
Sbjct: 2    SFVQLQVISSYSLLQSTTSIEELVVKAKERGYRAIALTDHNVLYGMVDFYKMCKKHQIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G  LD+           G        SI+LL   A GY+ L+ L S   LL + +   
Sbjct: 62   ILGLTLDV----------GGVVNNEETYSIILLAKNARGYESLMALSSEKMLLTENEW-- 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
             + +  + +  ++ LI +T G  G  +     +  + A K +  ++  F  +  Y+ +Q 
Sbjct: 110  -LTIEHISQY-SQNLIAITPGEKGETESFLLQDEKKSAAKVVGKWQAAFPKQQFYLGIQL 167

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            H+   +  +  V +LA       VA  +  ++   D  +  VL A+    V+S +     
Sbjct: 168  HQKL-KVIQDAVNELANETGTLTVALQDIRYIDAADDFSTTVLRAINKGEVLSNQQEAEE 226

Query: 249  TPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               +  ++         +   +A + T E+A+     + +H  +LP+F   +        
Sbjct: 227  GEYYLPESNEVEKLFKDNGLEQAAQQTNEVAKMIDADISLHQQLLPKFPLPKDTVTT--- 283

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+ + + GL        +      + Y +RL++EL VI +M F  YFLIV D + +A
Sbjct: 284  -EFLKEQCLKGL-------TLRVVQPDERYTKRLEYELAVIQKMGFEDYFLIVWDVMAYA 335

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             K  I  G GRGS AGS+ AY L ITD+DP+ ++LLFERFLN +R +MPD D+DF  +RR
Sbjct: 336  HKVKIVTGAGRGSAAGSLVAYLLEITDVDPIEYNLLFERFLNEERYTMPDIDLDFPDNRR 395

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +E++ YV+NKYG   VAQI TFG+L AK AL+DV R   +  S+ +   K IP      +
Sbjct: 396  EEILHYVKNKYGQNHVAQIATFGTLAAKMALKDVARVFGLSPSEANVWSKAIPKILGITL 455

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                  +    R+    +     L + ++++EGL RH STHAAGIVI D PL+Q VP+ +
Sbjct: 456  EKA-YKESVTLRKLVEENDKNKLLFKTAKRIEGLPRHISTHAAGIVISDNPLTQYVPLQK 514

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDH 606
                ++ +TQ+ M  +E+ GL+K DFLGLK LT++  +L     + G ++DL  IP  D 
Sbjct: 515  GG-GEILLTQYPMGNVEEIGLLKMDFLGLKNLTIIDNTLKLVQRETGKRLDLLTIPMQDQ 573

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            ET  L      +GIFQ ES+G++  L  ++P  IEDI A+ +LYRPGP++ I  +  RK 
Sbjct: 574  ETLQLFRQADMVGIFQFESTGIKNVLRRLEPSSIEDIAAVNALYRPGPMEQIDTFIKRKK 633

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G   I   H  +  +L  T GV++YQEQVMQ+A  + GY+L +AD+LRRA+GKK K  +D
Sbjct: 634  GVLPIEYPHESLSEILAVTYGVMVYQEQVMQVAAKMGGYTLGQADILRRAIGKKQKSIID 693

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K++  FISGA++ G +K +A+ +++ + +FA+YGFN+SHA AY+ I+YQ A++K HYP  
Sbjct: 694  KERHHFISGANQLGYTKEVAMQVYDYIERFANYGFNRSHAVAYSFIAYQMAYLKAHYPNA 753

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  A +   +++  K+K++  +A++  I+++PP++NT    F + +N I +   +IKG+ 
Sbjct: 754  FFVALLNSALNSSAKMKEYIIEAKKRKIKVIPPNINTSFSGFTLTENNILFGFNSIKGLR 813

Query: 847  TTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  +++    D  +  L DF  R+D K L    ++ L++AGA D F YSR  LL S+
Sbjct: 814  RDMIVEMIQNRKSDGKYLGLIDFLKRLDKKWLKPEYIKPLIYAGAFDQFDYSRGALLASV 873

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D I +  +      +  + ++F         K   E         + E E++ LG Y SG
Sbjct: 874  DGIVQSIK-----MSGNNIDLFELL------KPKYEFAPDLTLEEKLETEEQYLGTYLSG 922

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP + Y   LR+     Y        G   R+  MV +  + +T+KG  + +VT S+ + 
Sbjct: 923  HPTEKY-DQLRQWKQVEYT--SELTIGKTSRIIGMVKNVHKIRTKKGESMAFVTISDTSG 979

Query: 1026 EYEANFFP 1033
            +     FP
Sbjct: 980  DCSLTLFP 987


>gi|163757930|ref|ZP_02165019.1| putative dna polymerase iii alpha chain protein [Hoeflea
            phototrophica DFL-43]
 gi|162285432|gb|EDQ35714.1| putative dna polymerase iii alpha chain protein [Hoeflea
            phototrophica DFL-43]
          Length = 1123

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 260/1057 (24%), Positives = 464/1057 (43%), Gaps = 76/1057 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +   P++V L   S++S L GA     ++ + A      IA+TD N+L   +     A  
Sbjct: 1    MPD-PAYVELAAASNFSFLRGASHTEELVVQAARLGLGGIALTDRNSLAGVVRGHMAAKE 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+   +GC+L                     P I++       Y  L EL++       
Sbjct: 60   AGLAFAVGCRLVF---------------MDGTPDILVWPEDRAAYGNLCELLTLGKRR-A 103

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K    + L      G   L+ L   ++G        +  +     L   +  F D L++
Sbjct: 104  PKGECHLTLEDCLAHGRGLLMALVPPAAG-------SDRMKALPPVLERLRTAFPDHLHL 156

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQ 242
             L R H   D+   + + +LA TH++PLVA  + L+ + E     DVL  +    T+ + 
Sbjct: 157  ALTRHHGPDDQRHMAAIARLAQTHDVPLVAIGDVLYHAPERRPLQDVLTCIRERETLATI 216

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
              R +   + +L++ +EM+ +F    +A+    ++  R  F L       P     E   
Sbjct: 217  GTRLKPNAERHLRSHAEMLHLFKGYEQAVAQAAKLFARICFSLDELRYQYPDAPLFEALS 276

Query: 303  IQKEEENE-LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
             +     E L      GL+ R   G        +   + +  EL +I ++ ++ YFL V 
Sbjct: 277  SEPLPAQEALERLTAIGLKKRYPDG------TPEKVLKAIAHELRLIRKLDYAPYFLTVY 330

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D +++A+  +I    GRGS A S   Y L IT+++P +  LLFERF++ +R   PD D+D
Sbjct: 331  DIVRFARSQDIL-CQGRGSAANSAVCYCLEITEVNPGKVDLLFERFISEERNEPPDIDVD 389

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+EVI+Y+  KYG +R     T  + +A++A+R+VG+   +    +  +      
Sbjct: 390  FEHERREEVIQYIYEKYGRDRAGLAATVITYRARSAIREVGKVFGLSNDAIAAISGTKWG 449

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
              +  V      +D+R      AD  + ++L+++ ++ G  RH S H  G VI    LS 
Sbjct: 450  GWSREVDP----EDARRAGLDPADKHLAQMLDLASQITGFPRHLSQHVGGFVITRDKLSS 505

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSL 600
            L+P+      D  + +++   +E  G++K D L L  LT ++K+        G +  L+ 
Sbjct: 506  LIPIENAAMEDRTIVEWDKDDLESLGMLKIDVLALGMLTCIRKAFDFLDTHYGRRETLAS 565

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P  D  TY ++    T+G+FQ+ES      L  ++P C  D++  V++ RPGPI   +V
Sbjct: 566  LPDGDRATYDMICRADTIGVFQIESRAQMSMLPRLRPRCYYDLVIEVAIVRPGPIQGDMV 625

Query: 661  YN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
            +    R+ G+E +    P ++ +L +T GV ++QEQ M IA +  G+S  EAD LRRAM 
Sbjct: 626  HPYLRRRQGREPVSFPKPELEAVLGKTLGVPLFQEQAMNIAIVAGGFSPGEADKLRRAMA 685

Query: 719  KKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
               +   +   +++ + G  +NG  +  A + F  +  F +YGF +SHAA++A++ Y + 
Sbjct: 686  TFRRVGTIGSFQKKMVEGMLRNGYEREFAEHCFRQIEGFGEYGFPESHAASFALLVYVSC 745

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN---- 833
            W+K HYP  F AA +  +        +  +DAR+  ++I P  +N    D  +  +    
Sbjct: 746  WLKCHYPDVFCAAILNSQPMGFYAPAQLIRDAREHGVEIRPVDINFSSWDALLEPDANPQ 805

Query: 834  -----------------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
                              +   L  +KG G   A  +++      +DS+ D   R     
Sbjct: 806  PVSQRHHDMADVMKHSHAVRLGLRQVKGFGKADAAMLVDKRGRG-YDSVRDLWMR---SG 861

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            L+RR +E L  A      G  R   + ++  +   +             +FA    +   
Sbjct: 862  LSRRAIEQLAEADCFRSIGLERRDAIWAVKALDPLSSAER-------LPLFAIADTSNLQ 914

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            +             +  N+ + L F    HP+   +  L + G +   +      G  ++
Sbjct: 915  REPDIDLPPMPLGEQVINDYQSLSFSLKAHPISFLRANLARSGFRHNMDLAGIRSGVRVK 974

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +A +V+ +Q+  + KG  + + T  +         +P
Sbjct: 975  VAGLVLVRQRPGSAKG--VVFETIEDETGVANIIVWP 1009


>gi|227529180|ref|ZP_03959229.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
 gi|227350905|gb|EEJ41196.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
          Length = 1116

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 352/1032 (34%), Positives = 543/1032 (52%), Gaps = 54/1032 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FV LQV SS+SLL   + +N ++         AIA+TD N L+ A++F   A  AGI+P
Sbjct: 2    DFVPLQVKSSFSLLRSPIRINELVTTAKERGYSAIALTDKNVLYGAIDFYNAAKKAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG QL I + +             T   ++ L     GYQ L+EL +R    D  + ++
Sbjct: 62   VIGLQLTIALNN----------VDGTNLELLFLAKDRAGYQNLMELSTRQQTSD--RDTL 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    ++   +   +++       +               L        D L + +  +
Sbjct: 110  PLTFEQIKPFLSSLYVII--PPQSTVFSWLKA--EDTVVNLLHESTD--QDSLLLGI--N 161

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               D+ + S + QLA +H LPLV  +   +L+ +D  A  VL A+  +T + + +     
Sbjct: 162  PQLDQIQRSTLTQLAASHSLPLVGVSPVEYLNADDLFASKVLQAIDANTQLEKVEEKAKE 221

Query: 250  PDHYLKNRSE---MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                               +L +A + TVEIA +C+   +   PILP F         K 
Sbjct: 222  LGKDYLQPQADILRAYQAVNLEQAADKTVEIAVKCNIDFEFKQPILPHFDTPTG----KS 277

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR   + GL+ R     IA G    DY++RL  EL VI  M F  YFLIV D +++
Sbjct: 278  SAEYLRYLCIEGLKKRQ----IAPGLKLVDYQKRLAKELKVIHEMGFDDYFLIVWDVMRF 333

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +  I   PGRGS AGS+ AYAL ITDIDPL+++LLFERFLNP+R  MPD D+D   +R
Sbjct: 334  AHRTKITTDPGRGSAAGSLVAYALAITDIDPLQYNLLFERFLNPERAQMPDIDLDIPDNR 393

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R EV+ YV  KYGH RVAQIITFG+L AK  +RDV R   +    ++ L   +P+     
Sbjct: 394  RSEVLEYVHQKYGHNRVAQIITFGTLAAKQVIRDVSRVFGLNRYAINELTGALPHGLHIS 453

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   ++ +  R R      P    L  ++QKLEGL RH S HAAGIV+ ++PL ++VP+ 
Sbjct: 454  L-AGSLKESQRLRNLLNDHPEYRLLYRVAQKLEGLPRHYSIHAAGIVLSEKPLHEIVPLQ 512

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                  L +TQF    +E  GL+K DFLGL+ L+++  SL  + QR  + DLS I   D 
Sbjct: 513  NGS-EGLLMTQFPKDTVEALGLLKMDFLGLRNLSIMDNSLKLIRQRNPQFDLSKISLADS 571

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L     T G+FQ ES+G+R+ L  + PD  EDI+A+ +LYRPGP++NI  +  RK 
Sbjct: 572  KTLALFQKGLTDGVFQFESAGIREVLVNLHPDSFEDIVAVNALYRPGPLENIPHFIARKQ 631

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            GKE      P ++P+L  T G+++YQEQVMQ+A +++G+SL EAD+LRRAM KK +  M+
Sbjct: 632  GKEHYQLPDPSLEPILGATYGILVYQEQVMQLASVMAGFSLGEADLLRRAMSKKKRATME 691

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
              + +F++GA  NG S  +A  +F  + +FA+YGFN+SHA AY+ +++Q A++K +YP E
Sbjct: 692  GMRAKFMNGAQANGYSAELAKRVFNYIDQFANYGFNRSHAVAYSKMAFQMAYLKANYPAE 751

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  A M  E  NV+K+K   QDAR+  ++++ P +N     F +  N++++ L AIKG+ 
Sbjct: 752  FFTALMNAE-PNVDKLKMHVQDARRSGVKLVGPRINESQQQFSLSQNQLFFGLTAIKGLR 810

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                R I++    + P+  + +F SR+ SK     ++  L++AGA D  GY+R +++ +L
Sbjct: 811  RDFIREILQERQQNGPYKDIRNFISRLASKWQKPELIAPLIYAGAFDDLGYNRAEMIDAL 870

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI---TLEKFSVENSSVRFENEQRVLGFY 962
              +    Q            +F+      +D     T+        + R   E   LG Y
Sbjct: 871  PMLISGIQ------------LFSSTNELEADPELQSTIAARQEYPLTERLAKENEYLGVY 918

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFS 1021
             SGHP+  Y+ +  K  ++   +      G  + +  ++   +   T+K  R + +++ +
Sbjct: 919  LSGHPVTQYQDLAIKYRVQPASQL---RPGQTVTILMLINRVKTIHTKKDHRQMAFLSGT 975

Query: 1022 EPAKEYEANFFP 1033
            +   E EA  FP
Sbjct: 976  DQTGEIEATVFP 987


>gi|313897381|ref|ZP_07830924.1| DNA polymerase III subunit alpha [Clostridium sp. HGF2]
 gi|312957751|gb|EFR39376.1| DNA polymerase III subunit alpha [Clostridium sp. HGF2]
          Length = 1026

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 353/1025 (34%), Positives = 566/1025 (55%), Gaps = 43/1025 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL V S Y+LL+  L++  I+         A+A+TD + +  A+ F        I+PI 
Sbjct: 3    VHLHVRSCYTLLQSTLTIPKIVAAAKRCGYTAVALTDKHVMHGAMAFYHACKKENIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++D+  Q+ L                V+L     GYQ L++L + +   ++     RI
Sbjct: 63   GMEVDVLEQEEL-------------YGFVVLAKNDAGYQNLLKLSTWLNTGEER----RI 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190
                      +  I+LT G    ++         +    L   +K F D  YV++ R+  
Sbjct: 106  PDLDTLAYYAKDCIVLTNGDQNQMETLIVKEELDLLRHWLKLCRKQFSD-FYVSIARNDS 164

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G    +   + Q+    ++P  A +   F  EED E++  L A+     +  K       
Sbjct: 165  GLMEKKNPVLKQVCKELDIPYTALSRIYFEREEDEESYKTLCAIDQGVSLHDKMLNYSPR 224

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             ++   +   +    +    L+ +  IA  C   +Q+   +LP+F  K         E  
Sbjct: 225  RYFRTPQEMQLLYEDEE---LQMSDRIAALCQVEMQLPKAVLPKFQNKYGV----SSEEF 277

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR+    GL+ R+    I+       Y+QRLD+EL+VI RM+++ YFLIV DFI++AK  
Sbjct: 278  LRSLCQKGLQKRMQYQPISS-----VYQQRLDYELDVIIRMQYADYFLIVWDFIRFAKTQ 332

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I +GPGRGS AGS+ AY L IT +DP+R+ LLFERFLNP+R+SMPD D DF  +RRDEV
Sbjct: 333  HIYIGPGRGSAAGSLVAYCLGITHVDPIRYHLLFERFLNPERISMPDIDTDFPDNRRDEV 392

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I YV+  YG  RV+ IITF +L AK  LRDVG+A+++   Q+DRLCKL+PN     +   
Sbjct: 393  IHYVEQLYGKHRVSHIITFNTLAAKQVLRDVGKAMEINPRQIDRLCKLVPNVIKVTLDYA 452

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
               +D+RF+E   +  ++ RL   ++KLEGL RHAS HAAGIV  D  + Q+ P+  DV 
Sbjct: 453  -YQNDARFKELINSGETMRRLYATARKLEGLPRHASLHAAGIVFSDEAIEQVCPLI-DVD 510

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETY 609
              +  TQF M+++E+ GLIK DFLGL+ LT++ + +  +     K  D+  IP DD +TY
Sbjct: 511  EGICATQFTMEYLEELGLIKMDFLGLRNLTIIDEIVQHINATADKKLDIMRIPLDDAKTY 570

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L+    T+G+FQLES GM+  +  MQP+C EDI+A ++L+RPGP++NI  Y +R+   E
Sbjct: 571  ALIRAVDTVGVFQLESEGMKNLIRKMQPNCFEDIVATIALFRPGPMENIPEYLDRREHPE 630

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  IHP + P+L+ T G++IYQEQ+MQ+AQ ++G++L +AD LR+A+ KK  EE+ + +
Sbjct: 631  KVDYIHPSLQPILQNTYGIMIYQEQIMQVAQTMAGFTLGKADNLRKAISKKKGEELRRMQ 690

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FISGA + G  + +A  ++ L+ KFA+YGFN+SH+ AY +I+YQ A++K + P+ F  
Sbjct: 691  AEFISGALRKGYDEALAQKVYALIMKFANYGFNRSHSVAYGMIAYQLAYLKANAPLYFFN 750

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            + +   + +  K  ++  +AR+ NIQI+ P VN     + + DN + +    IKG+G+  
Sbjct: 751  SLLNSVIGSETKTSEYVFEARKRNIQILLPDVNRSHNQYGIEDNALRFPFVGIKGIGSAV 810

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            +  I+E       F    DF +R++  K+ ++ +E L++AGALDCF   R  L+ SL++ 
Sbjct: 811  SSLIVEERDKKGEFRDFFDFTARMNGNKIGKKTIEILIYAGALDCFKVGRASLMASLEDA 870

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +YA  V+    ++   +F  +  +      +      N+++R E E+  +GFY S HP+
Sbjct: 871  LRYADLVKIEDVDQV--LFDFDLVSKPAMTMMRD----NATIRSEKEKEAIGFYLSRHPI 924

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
               +  + K        S+   +G  ++   +V   +Q +T+ G  + +V  S+   +++
Sbjct: 925  ADVRSRMGK--DLPILISLPKYKGRYVKFVCLVDRCRQYRTKNGDMMMFVIGSDETGKFD 982

Query: 1029 ANFFP 1033
                P
Sbjct: 983  LVCMP 987


>gi|212638343|ref|YP_002314863.1| DNA polymerase III subunit alpha [Anoxybacillus flavithermus WK1]
 gi|212559823|gb|ACJ32878.1| DNA polymerase III, alpha subunit [Anoxybacillus flavithermus WK1]
          Length = 1077

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 350/1035 (33%), Positives = 555/1035 (53%), Gaps = 77/1035 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  + SF+HLQV S YSLL   + +  ++ +    Q PAIA+TD N L+  + F +   A
Sbjct: 1    MGDTLSFIHLQVRSGYSLLSSTVKIEELVTRARELQFPAIALTDENVLYGVMPFYEACQA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+PIIG    I  +                  +VLL    +GY++L+ + + +   D 
Sbjct: 61   HGIKPIIGMMATIMDEHGHPD------------QLVLLAKNNDGYRQLVHIATAIQTNDG 108

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                  I L       +E LI +T G  G +++       + AE  + T+ KLF     Y
Sbjct: 109  KG----ISLLDFSHHTSE-LIGMTSGVYGRVEQHLLNGEIEQAEAIVQTYAKLFQRGDFY 163

Query: 184  VNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            +N+QRH   ++     ++ + +   ++PLVATN+  ++ +ED  A + L+A+ H   +  
Sbjct: 164  INVQRHGLQEQEHLLSLLFEHSKRWDIPLVATNDVRYIYKEDTLAFECLLAMKHGKKMVD 223

Query: 243  KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             +RPR  T +++LK+  EM ++FS+  EA+E TV IA+RC    +     +PR+      
Sbjct: 224  PNRPRLATNEYHLKSAHEMAALFSNGYEAVEETVRIAQRCHVTFESKRWFMPRYPVPSG- 282

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               K  +  L             Q         + Y  RL +EL +I +M FS YFLIVA
Sbjct: 283  ---KTADEYL-------QTWCWEQFTKRFPDRPKAYVARLQYELQIIQQMNFSDYFLIVA 332

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            DF+++A++  I  GPGRGS AGS+ AY L IT +DPL++ LLFERFLNP R+S+PD DID
Sbjct: 333  DFVRFARERGILTGPGRGSAAGSIVAYILGITQVDPLQYGLLFERFLNPARLSLPDIDID 392

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  DRR+EVIRY++ KYG + VAQI+TFG+   ++A+R+VGR   +   ++ +       
Sbjct: 393  FPDDRREEVIRYIEQKYGTDHVAQIVTFGTFGMRSAIREVGRVFDVDEREIQQTLATGSF 452

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
            D   P                           ++Q++EGL +H S HAAGIVI  RPL+ 
Sbjct: 453  DRTRPW------------------------HYVAQRIEGLPKHTSVHAAGIVISPRPLTD 488

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSL 600
            ++P+    ++   VTQ+ M  +E+ GL+KFD L LK LT++++ +  + QR         
Sbjct: 489  IIPLQ-SGQTTTYVTQYAMDALERLGLLKFDLLALKNLTMIEQMIQSIEQRTGHRLSFEN 547

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD +TY LL+   T G+FQLES GM++ L  +QP   EDI+A+ +L+RPGP++ I  
Sbjct: 548  MPIDDQKTYALLSRGDTFGVFQLESEGMKRILRELQPTTFEDIVAVNALFRPGPMEQIPT 607

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y  RK+G+E I  +H  +  +L+ T GVI+YQEQ+M+IA+ ++ +SL++AD+LRRA+ KK
Sbjct: 608  YIARKHGREPIRYMHDDLQSILQSTYGVIVYQEQIMKIAEQMAKFSLAQADLLRRAISKK 667

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
               +M+K+K+ FI G  +NG    +A  ++EL+ +FA YGFN+SHA AY+ I+Y  A++K
Sbjct: 668  DVGQMEKEKKHFIEGCIQNGYDAHLANELYELIVRFAGYGFNRSHAVAYSYIAYMLAYIK 727

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYP++F AA +T      EK+ +   + R   I+++PPS+      F V DN I + L 
Sbjct: 728  AHYPLDFYAAVLTNVSGQKEKMMQCVHELRSKKIRLLPPSIARSEGHFTVDDNGIRFGLL 787

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            AIK V     + ++     +PF    DF SR+  +   ++V+E+L+F+G  D F   R  
Sbjct: 788  AIKQVNAAFVKQMVRERQKRPFSDFFDFVSRLRMESSQKKVIEALIFSGCFDEFHIERAT 847

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L  S+D   ++A+ +                 +   +         +   + + E++ L 
Sbjct: 848  LYASIDVAIEHAELMN---------------FSLHVQPKYVHAEPLSLIDQLKYEKQWLN 892

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEES--VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             Y S HP++ +       G K   E        G    +   V    +K+T+KG  + +V
Sbjct: 893  VYVSPHPVESFSHFYSMWGAKRMYEWTKENVNHGK---VIVYVEEVTRKRTKKGEEMAFV 949

Query: 1019 TFSEPAKEYEANFFP 1033
            T  + + E++A  FP
Sbjct: 950  TICDDSDEWQAVVFP 964


>gi|302524129|ref|ZP_07276471.1| error-prone DNA polymerase [Streptomyces sp. AA4]
 gi|302433024|gb|EFL04840.1| error-prone DNA polymerase [Streptomyces sp. AA4]
          Length = 1053

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 274/1045 (26%), Positives = 468/1045 (44%), Gaps = 69/1045 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++  L  HS++S L+GA     ++++ A  +  AIA+TD + ++  + F++ A   G+  
Sbjct: 2    AYAELHCHSNFSFLDGASHPEELVEEAARLRLDAIALTDHDGMYGVVRFAEAAKELGVAT 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ----- 124
            + G +L   +        Q     P    ++LL   ++GY+ L   ++   L        
Sbjct: 62   VFGTELSFGLS-----APQNGVADPEGEHLLLLARGSDGYRSLCRAITAGQLRGHDEKDA 116

Query: 125  ---GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD- 180
                K      LS + E       +LTG   G +  A        A   L     LFG  
Sbjct: 117  ERAEKGRPIYDLSAVAEEVVGKCAVLTGCRKGSVRSALVREGPDAAFAELRRLVDLFGRT 176

Query: 181  RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            ++YV L  H    D      + ++A   +LP VAT  + +   E     D L A+     
Sbjct: 177  QVYVELIDHGQPLDSTHNDLLAEMADELKLPTVATTAAHYARPERGRLADALAAIRARRG 236

Query: 240  VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +   +         +L++ +EM  IF   P A++ +  +   C+F L++ AP LP F   
Sbjct: 237  IDDLEGWLPGDAAAFLRSGNEMAEIFQRYPGAVQRSALLGMECAFPLKLLAPKLPPFDVP 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            + +     E   LR     G + R                +++  E+ VI  + F GYFL
Sbjct: 297  KGE----TETTHLRALVREGFKERYRGKPKEAQA-----EKQIKHEMEVIESLGFPGYFL 347

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV D +++ ++ +I    GRGS A S   YAL IT +DP++++LLFERFL PDR   PD 
Sbjct: 348  IVWDIVRFCREQDIL-CQGRGSAANSAVCYALGITKVDPIKYNLLFERFLAPDRDGYPDI 406

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+D   DRR+E I+YV  K+G    AQ+    + +A++A+RD  RAL     Q D   K 
Sbjct: 407  DLDIESDRREEAIQYVYGKHGRLNAAQVANVITYRARSAIRDAARALGYSPGQQDAWSKQ 466

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            I    A   + +                  + +++++  LE   RH   H+ G+V+   P
Sbjct: 467  IDRWGALRSTEK-----------DHDHDIPNDVVQLAFALEDFPRHLGIHSGGMVMCREP 515

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            +SQ+ P+      +  V Q+  +     GL+KFD LGL  L+ L   LD + + +  ++D
Sbjct: 516  VSQVCPVEWARMENRSVLQWEKEDCAAVGLVKFDLLGLGMLSALHYMLDLVKEYKDEEID 575

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID- 656
            L+ +   D   Y +L     +G+FQ+ES      L  ++P    D+   V+L RPGPI  
Sbjct: 576  LAELDLADENIYEMLCHADAIGVFQVESRAQLATLPRLRPKEFYDLAVEVALIRPGPIQG 635

Query: 657  -NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             ++  Y  RK G+EK    HPL+   LK+T GV ++QEQ+MQIA  ++ ++ +EAD LR 
Sbjct: 636  GSVHPYIRRKQGREKWEYDHPLLKNALKKTLGVPLFQEQMMQIALDVAKFTPAEADQLRH 695

Query: 716  AM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AM  K+ + +M++  +RF+ GA  NG+   +A  IF+ L  FA++GF +SHA ++A + +
Sbjct: 696  AMGSKRSQRKMERLHKRFLDGAVANGVDAELAEKIFQKLKAFANFGFPESHALSFAHLVF 755

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-- 832
             +A+ K ++P  F A  +  +       +    DAR+  +  + P +N       +    
Sbjct: 756  ASAYFKHYHPDAFCAGLLRAQPMGFYSPQSLVADARRHGVTTLGPDINRSLPHATLEALP 815

Query: 833  -----NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                 + +   L+ ++ +G T A  I+    A+  ++S+ D   RV   +L    LE+L 
Sbjct: 816  DNGKLHAVRGGLSTVRMIGETLAEEIVAERQANGRYESMSDLGRRV---RLTTPQLEALA 872

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AGA   FG  R Q L S   +            ++ E +     G     +        
Sbjct: 873  TAGAFSAFGPDRRQALWSAGAV----------AQDRPEKLPGTGVG-----VDAPMLPGM 917

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            +       +    G     +P +  +  L  +G+   ++ +    G  + +   V  +Q+
Sbjct: 918  DGLDLAAADVWATGISPDSYPTEFIRDRLDALGVVTADKLLDREDGERVLVGGAVTHRQR 977

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANF 1031
              T  G  + ++   +         
Sbjct: 978  PATAGG--VTFLNLEDETGMVNVIC 1000


>gi|320324026|gb|EFW80109.1| error-prone DNA polymerase [Pseudomonas syringae pv. glycinea str.
            B076]
          Length = 1031

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 269/1043 (25%), Positives = 458/1043 (43%), Gaps = 82/1043 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     +  L   S++S   GA S   + ++ +     A+AITD   L   +   Q + +
Sbjct: 1    MTSE--YAELHCLSNFSFQRGASSARELFERASRHGYQALAITDECTLAGIVRAWQASIS 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+  IIG ++ I+                  P  VLLV +  GY+ L +L++       
Sbjct: 59   TGLPLIIGSEMHIENG----------------PKAVLLVESQTGYEALCKLITVARRR-A 101

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K   R+      E  ++GL+ +                +Q         ++ F +RL++
Sbjct: 102  RKGEYRLLREDF-EPSSDGLLAIWLPD--------IEGDAQACLAHGRWLRERFAERLWL 152

Query: 185  NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQ 242
             ++ HRG  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V   
Sbjct: 153  GVELHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEA 212

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                    + +L+    +   + D   A   +V IARRC+F L+      P  +  +   
Sbjct: 213  GHLLFANGERHLRPLDALAEHYPDWLLA--ESVRIARRCTFDLKQLKYEYPHELVPKG-- 268

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +   + LR     G   R   G           R +++ EL +I   KF  YFL V D
Sbjct: 269  --QTPTSWLRELTERGARKRWPNGL------TPATRAQVEKELALITEKKFDSYFLTVHD 320

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+  +I    GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF
Sbjct: 321  IVEFARSQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISRERNEPPDIDVDF 379

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              DRR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L +     
Sbjct: 380  EHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPPDQINALAEAFSRW 439

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                 S + + +           P + R+L ++ +L G  RH S H  G VI + PL  L
Sbjct: 440  SDSLPSPERLREY----GFDADTPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETL 495

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601
            VP+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +
Sbjct: 496  VPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKRWTLADL 555

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD ETY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V+
Sbjct: 556  PGDDRETYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVH 615

Query: 662  N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                R+N +E I    P +  + + T GV ++QEQVM++A + +GY+  EAD LRRAM  
Sbjct: 616  PYLRRRNKEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAAGYTPGEADELRRAMAA 674

Query: 720  KIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
              +    +  +ER  +G  KNG     A  IFE +  F  YGF +SHAA++A+++Y + W
Sbjct: 675  WKRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCW 734

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831
            +K H P  F  A +           +  QDAR+ +I+I P  V     D  +        
Sbjct: 735  LKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDS 794

Query: 832  --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              +  I   L  ++G     AR I  A + + F    D   R     L+ R  E+L  +G
Sbjct: 795  TRNLAIRLGLRMVRGFREDDARRIETARSKRLFSDATDLTLRA---GLDARAAEALADSG 851

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            AL      R +    +  +                 +F       +         +   +
Sbjct: 852  ALRGLIGHRHRARWEVAGV------------EAQRPLFNDLPSEDTQ----VTLPLPTVA 895

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 +   LG     HPL + +  L     +  ++ ++      + +A +V+ +Q+  T
Sbjct: 896  EDLMADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLSLENDRTLSVAGLVIGRQRPGT 955

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
              G  + +VT  +         +
Sbjct: 956  ASG--VTFVTLEDEFGMVNVVVW 976


>gi|66045759|ref|YP_235600.1| error-prone DNA polymerase [Pseudomonas syringae pv. syringae B728a]
 gi|75502059|sp|Q4ZTG0|DNAE2_PSEU2 RecName: Full=Error-prone DNA polymerase
 gi|63256466|gb|AAY37562.1| DNA polymerase III alpha subunit [Pseudomonas syringae pv. syringae
            B728a]
          Length = 1031

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 267/1043 (25%), Positives = 455/1043 (43%), Gaps = 82/1043 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   +  L   S++S   GA S   + ++       A+AITD   L   +   Q + +
Sbjct: 1    MTRE--YAELHCLSNFSFQRGASSARELFERALRHGYKALAITDECTLAGIVRAWQASKS 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+  I+G ++ I+                  P +VLLV    GY+ L +L++       
Sbjct: 59   TGLPLIVGSEMHIENG----------------PKVVLLVENQAGYEALCKLITVARRR-A 101

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            GK   R+      E   +GL+ L               ++Q         ++ F +RL++
Sbjct: 102  GKGEYRVLREDF-EPAPDGLLALWLPD--------LDGNAQACLAGGRWLRERFAERLWL 152

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQ 242
             +  HRG  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V   
Sbjct: 153  GVGLHRGPDDEQRLADLLALAQSLGVPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEA 212

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                    + +L+    +   + D   A   +V IARRC+F L       P  +  +   
Sbjct: 213  GHLLFANGERHLRPLDALSEHYPDWLLA--ESVRIARRCTFDLGDLKYEYPHELVPKG-- 268

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +   + LR     G+  R   G           R +++ EL +IA  KF  YFL V D
Sbjct: 269  --QTSTSWLRELTERGVRRRWPGGL------TPATRAQVEKELALIAEKKFDSYFLTVHD 320

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+  +I    GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF
Sbjct: 321  IVEFARSQHIL-CQGRGSAANSAVCYALGITELNPEQSNLLFERFISRERNEPPDIDVDF 379

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              DRR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L +     
Sbjct: 380  EHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPPEQINALAEAFSRW 439

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                 S + + +           P + R+L ++ +L G  RH S H  G VI + PL  L
Sbjct: 440  SDSLPSPERLREY----GFDADTPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETL 495

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601
            VP+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +
Sbjct: 496  VPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGQRWTLATL 555

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD +TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V+
Sbjct: 556  PGDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVH 615

Query: 662  NNRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
               +    +  +    P ++ + K T GV ++QEQVM++A L + Y+  EAD LRRAM  
Sbjct: 616  PYLRRRNGEEDVTYP-PKLESVFKRTLGVPLFQEQVMEVAILAADYTPGEADELRRAMAA 674

Query: 720  KIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
              +    +  +ER  +G  KNG     A  IFE +  F  YGF +SHAA++A+++Y + W
Sbjct: 675  WKRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCW 734

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831
            +K H P  F  A +           +  QDAR+ +I+I P  V     D  +        
Sbjct: 735  LKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDR 794

Query: 832  --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              +  I   L  ++      A  I  A A +PF    D   R +   L+ R  E+L  +G
Sbjct: 795  TRNLAIRLGLRMVRSFREEDALRIEVARAKRPFVDATDLTLRAE---LDARAAEALADSG 851

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            AL      R +    +  +                 +F       +         +   +
Sbjct: 852  ALRGLIGHRHRARWEVAGV------------EAQRPLFDDLPSEETQ----VTLPLPTVA 895

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 +   LG     HPL + +  L     +  ++ +       + +A +V+ +Q+  T
Sbjct: 896  EDLVADYTTLGTTLGPHPLALLRRQLAAKRFRSSQDLLHLENDRTLSVAGLVIGRQRPGT 955

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
              G  + +VT  +         +
Sbjct: 956  ASG--VTFVTLEDEFGMVNVVVW 976


>gi|71735001|ref|YP_274870.1| error-prone DNA polymerase [Pseudomonas syringae pv. phaseolicola
            1448A]
 gi|123775093|sp|Q48IB1|DNAE2_PSE14 RecName: Full=Error-prone DNA polymerase
 gi|71555554|gb|AAZ34765.1| DNA polymerase III, alpha subunit, putative [Pseudomonas syringae pv.
            phaseolicola 1448A]
 gi|320329030|gb|EFW85029.1| error-prone DNA polymerase [Pseudomonas syringae pv. glycinea str.
            race 4]
          Length = 1031

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 269/1043 (25%), Positives = 458/1043 (43%), Gaps = 82/1043 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     +  L   S++S   GA S   + ++ +     A+AITD   L   +   Q + +
Sbjct: 1    MTSE--YAELHCLSNFSFQRGASSARELFERASRHGYQALAITDECTLAGIVRAWQASIS 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+  IIG ++ I+                  P  VLLV +  GY+ L +L++       
Sbjct: 59   TGLPLIIGSEMHIENG----------------PKAVLLVESQTGYEALCKLITVARRR-A 101

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K   R+      E  ++GL+ +                +Q         ++ F +RL++
Sbjct: 102  RKGEYRLLREDF-EPSSDGLLAIWLPD--------IEGDAQACLAHGRWLRERFAERLWL 152

Query: 185  NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQ 242
             ++ HRG  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V   
Sbjct: 153  GVELHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEA 212

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                    + +L+    +   + D   A   +V IARRC+F L+      P  +  +   
Sbjct: 213  GHLLFANGERHLRPLDALAEHYPDWLLA--ESVRIARRCTFDLKQLKYEYPHELVPKG-- 268

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +   + LR     G   R   G           R +++ EL +I   KF  YFL V D
Sbjct: 269  --QTPTSWLRELTERGARKRWPNGL------TPATRAQVEKELALITEKKFDSYFLTVHD 320

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+  +I    GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF
Sbjct: 321  IVEFARSQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISRERNEPPDIDVDF 379

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              DRR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L +     
Sbjct: 380  EHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPPDQINALAEAFSRW 439

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                 S + + +           P + R+L ++ +L G  RH S H  G VI + PL  L
Sbjct: 440  SDSLPSPERLREY----GFDADTPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETL 495

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601
            VP+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +
Sbjct: 496  VPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKRWTLADL 555

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD ETY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V+
Sbjct: 556  PGDDRETYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVH 615

Query: 662  N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                R+N +E I    P +  + + T GV ++QEQVM++A + +GY+  EAD LRRAM  
Sbjct: 616  PYLRRRNKEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAAGYTPGEADELRRAMAA 674

Query: 720  KIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
              +    +  +ER  +G  KNG     A  IFE +  F  YGF +SHAA++A+++Y + W
Sbjct: 675  WKRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCW 734

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831
            +K H P  F  A +           +  QDAR+ +I+I P  V     D  +        
Sbjct: 735  LKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDS 794

Query: 832  --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              +  I   L  ++G     AR I  A + + F    D   R     L+ R  E+L  +G
Sbjct: 795  TRNLAIRLGLRMVRGFREDDARRIETARSKRLFSDATDLTLRA---GLDARAAEALADSG 851

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            AL      R +    +  +                 +F       +         +   +
Sbjct: 852  ALRGLIGHRHRARWEVAGV------------EAQRPLFNDLPSEDTQ----VTLPLPTVA 895

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 +   LG     HPL + +  L     +  ++ ++      + +A +V+ +Q+  T
Sbjct: 896  EDLMADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLSLENDRTLSVAGLVIGRQRPGT 955

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
              G  + +VT  +         +
Sbjct: 956  ASG--VTFVTLEDEFGMVNVVVW 976


>gi|300782746|ref|YP_003763037.1| DNA polymerase III subunit alpha [Amycolatopsis mediterranei U32]
 gi|299792260|gb|ADJ42635.1| DNA polymerase III subunit alpha [Amycolatopsis mediterranei U32]
          Length = 1103

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 282/1037 (27%), Positives = 473/1037 (45%), Gaps = 63/1037 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS++S L+GA     ++++ A  +  AIA+TD + ++  + F++ A   G+  +
Sbjct: 61   YAELHCHSNFSFLDGASHPEELVEEAARLELDAIALTDHDGMYGVVRFAEAARELGVDTV 120

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ-GKQSV 129
             G +L   ++       Q   P P    ++LL    +GY+ L   ++   +  Q  K   
Sbjct: 121  FGTELSFGLRS-----PQNGVPDPEGEHLLLLARGDQGYRALCRAITAGQIHHQAEKGRP 175

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
               L  + E      ++LTG   G +  A   +    A ++L      FG D +YV L  
Sbjct: 176  SYDLGAVAEEVAGQCVVLTGCRKGAVRSALVAHGPAAAAEKLKELVDRFGRDNVYVELTD 235

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR   D      + QLA    LP VAT  + +   E     D L A+     + + +   
Sbjct: 236  HRQPLDSTHNDLLTQLAGELGLPTVATTAAHYARPERAPLADALAAIRARRGIDELEGWL 295

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  +L++ +EM ++F   P A+  +  +   C+F L++ AP LP F   E       
Sbjct: 296  PAAGTAFLRSGAEMDALFRRYPGAVRRSALLGMECAFPLKLIAPELPPFDVPEG----YT 351

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E   LR     G E R          H +  ++++  EL +I  + F GYFLIV D +++
Sbjct: 352  ETTYLRELTKEGAEERFQGKP-----HEEQAKEQIKHELAIIEELGFPGYFLIVWDIVRF 406

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             ++++I    GRGS A S   YAL IT +D + + LLFERFL PDR   PD D+D   DR
Sbjct: 407  CREHDIL-CQGRGSAANSAVCYALGITKVDSVAYELLFERFLAPDRDGYPDIDLDIESDR 465

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+E I+YV  K+G  R+AQ+    + +A++A+RD  RAL     Q D   K I    +  
Sbjct: 466  REEAIQYVFEKHGRLRIAQVANVITYRARSAVRDAARALGYSPGQQDAWSKQIDRWGSLQ 525

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             + +                  D +L+++  LE   RH   H+ G+V+   P+SQ+VP+ 
Sbjct: 526  NTEK-----------DHDHDIPDEVLQLAFALEDFPRHLGIHSGGMVMCAEPVSQVVPVE 574

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                +D  V Q+  +    AGL+KFD LGL  L+ L   +D +A+ +  +VDL+ +   D
Sbjct: 575  WARMADRSVIQWEKEDCAAAGLVKFDLLGLGMLSALHYMIDLVAEYKDEQVDLAELDLAD 634

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNN 663
             + Y +L     +G+FQ+ES      L  +QP    D+   V+L RPGPI   ++  Y  
Sbjct: 635  EKIYDMLCRADAIGVFQVESRAQLATLPRLQPREFYDLAVEVALIRPGPIQGGSVHPYIR 694

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            RK G+E+    HPL++  L +T+GV ++QEQ+MQIA  ++ ++ +EAD LR AM  K+  
Sbjct: 695  RKQGREEWTYDHPLLERALHKTKGVPLFQEQMMQIALDVANFTAAEADQLRHAMGSKRSD 754

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             +MD  ++RF+ GA+ NG+   +A  IF  L  FA++GF +SHA ++A + + +A+ K +
Sbjct: 755  RKMDLLRQRFLEGAAANGVDDELAQKIFLKLKAFANFGFPESHALSFAHLVFSSAYFKFY 814

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-------NRI 835
            +P  FLA  +  +       +    DAR+  + +  P +N       +         + +
Sbjct: 815  HPDAFLAGLLRAQPMGFYSPQSLVADARRHGVTVHGPDINRSLPHATLEALPDKGKLHAV 874

Query: 836  YYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
               L+ ++ +G   A+ I+   A +  +  + D   RV   +L    +E+L  AGA   F
Sbjct: 875  RTGLSTVRKIGEDLAKRIVAERAENGDYRDMADVARRV---RLTTPQIEALATAGAFAGF 931

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            G  R Q L         A  V   R  +   +                    +       
Sbjct: 932  GGDRRQALW-------TAGAVAGERPERLPGLVGS---------PAPVLPGMDGLDVAAA 975

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +    G     +P +  +  L ++G+           G  + +   V  +Q+  T  G  
Sbjct: 976  DVWATGVSPDSYPTEFIRDRLDELGVVPAGGLADLDDGARVLIGGAVTHRQRPATAGG-- 1033

Query: 1015 IGWVTFSEPAKEYEANF 1031
            + ++   +         
Sbjct: 1034 VTFLNIEDETGMINVIC 1050


>gi|315504584|ref|YP_004083471.1| DNA polymerase iii, alpha subunit [Micromonospora sp. L5]
 gi|315411203|gb|ADU09320.1| DNA polymerase III, alpha subunit [Micromonospora sp. L5]
          Length = 1116

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 288/1052 (27%), Positives = 462/1052 (43%), Gaps = 81/1052 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS++S L+GA     + ++ A     A+A+TD +  +  + F++ A A  +  I
Sbjct: 66   YAELHAHSNFSFLDGASHPEELAEEAARLGLTALAVTDHDGFYGVVRFAEAARALRLPTI 125

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L + +        Q   P P    +++L    EGY RL   +SR  L    K    
Sbjct: 126  FGAELSLGLPG-----PQNGEPDPLGRHLLVLAHGHEGYARLAATISRAQLRGGEKGRPV 180

Query: 131  I-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
               L  L     + +++LTG   G +  A        A + L     LFG + + V L  
Sbjct: 181  YGELEELAAELRDHVLVLTGCRKGHVPAALLTEGVDAAARELDRLTALFGAETVAVELTD 240

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    D  R   +  LA    LP VATNN  + +         + AV     + + D   
Sbjct: 241  HGHPVDADRNDALADLAAAAGLPTVATNNVHYATPGRRRLATTVAAVRARRSLDEIDGWL 300

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  +L++ +EM + F+  P A+    E     +F LQ+ AP LP +           
Sbjct: 301  PAAATAHLRSGAEMAARFAAYPGAVARAAEYGAELAFDLQLVAPRLPAYPVPPG----HT 356

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E + LR   + G   R          H + Y  +L+ EL +I  + F GYFL+V D + +
Sbjct: 357  EMSWLRRLTMDGARERYG----PPEAHPEAY-AQLEHELRMIEDLGFPGYFLVVYDIVAF 411

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             +  +I    GRGS A S   YAL IT++D +R  LLFERFL P+R   PD D+D   DR
Sbjct: 412  CRAQDIY-CQGRGSAANSAVCYALRITNVDAVRHRLLFERFLAPERDGPPDIDVDIESDR 470

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI++V  +YG E  AQ+    S + ++A+RDV +A      Q D   K I    +  
Sbjct: 471  REEVIQHVYARYGREHTAQVANVISYRPRSAVRDVAKAFGFSPGQQDAWSKQIDRWGSV- 529

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                          A       ++++  + +L+   RH   H+ G+VI DRP+ ++ P+ 
Sbjct: 530  -------------AAVDVADIPEQVVAYANELQTFPRHLGIHSGGMVICDRPVIEVCPVE 576

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                    V Q++       GL+KFD LGL  L+ L    D +  R   +DL  +  DD 
Sbjct: 577  WGRMPGRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHYGYDLIGSR---LDLGDMTLDDP 633

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664
            E Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y  R
Sbjct: 634  EVYDMLCRADSVGVFQVESRAQMATLPRLKPREFYDLVVEVALIRPGPIQGGSVHPYIRR 693

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723
            KNG+E +   HPL+   L++T GV ++QEQ+MQ+A  L+G+  + AD LRRAM  K+  E
Sbjct: 694  KNGQEPVTYAHPLMRNALEKTLGVPLFQEQLMQLAIDLAGFDAAGADQLRRAMGAKRSVE 753

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M +  +R  +G ++ GI+  +A +++  L  FA YGF +SHA ++A + Y ++W+K ++
Sbjct: 754  RMAQIADRLYAGMAERGITGELADDVYRKLTAFASYGFPESHAMSFAYLVYASSWLKRYH 813

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN--------------------- 822
            P  FLAA +  +       +    DAR+  +++  P +N                     
Sbjct: 814  PGPFLAALLNAQPMGFYSPQTLADDARRHGVEVRRPDINASGAKAVLESTPETRWGSVPG 873

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881
             P   + +G   +   L +++ +G   A  I     A  P+  + D   RV    L    
Sbjct: 874  EPPHAWGLGGPAVRLGLGSVRTLGEDVAERIEAERAAHGPYRDMPDLARRV---GLTAAQ 930

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE+L  A A  CFG +R Q                    ++   +     G  +D  TL 
Sbjct: 931  LEALATADAFACFGLTRRQ----------ALWAAGAAAQDRPGRLPGTVTG--ADPPTLP 978

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
              +      R   +    G     HP    +  L ++G            G  IR+  +V
Sbjct: 979  GMAA---VDRLVADVWATGLSPESHPARFIRDRLDELGAVPIARLGQVPPGQRIRVGGIV 1035

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +Q+  T  G  + ++   +          P
Sbjct: 1036 THRQRPATAGG--VTFLNLEDETGMLNVTCSP 1065


>gi|302868946|ref|YP_003837583.1| DNA polymerase III subunit alpha [Micromonospora aurantiaca ATCC
            27029]
 gi|302571805|gb|ADL48007.1| DNA polymerase III, alpha subunit [Micromonospora aurantiaca ATCC
            27029]
          Length = 1116

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 288/1052 (27%), Positives = 462/1052 (43%), Gaps = 81/1052 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS++S L+GA     + ++ A     A+A+TD +  +  + F++ A A  +  I
Sbjct: 66   YAELHAHSNFSFLDGASHPEELAEEAARLGLTALAVTDHDGFYGVVRFAEAARALRLPTI 125

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L + +        Q   P P    +++L    EGY RL   +SR  L    K    
Sbjct: 126  FGAELSLGLPG-----PQNGEPDPLGRHLLVLAHGHEGYARLAATISRAQLRGGEKGRPV 180

Query: 131  I-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
               L  L     + +++LTG   G +  A        A + L     LFG + + V L  
Sbjct: 181  YGELEELAAELRDHVLVLTGCRKGHVPAALLTEGVDAAARELDRLTALFGAETVAVELTD 240

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    D  R   +  LA    LP VATNN  + +         + AV     + + D   
Sbjct: 241  HGHPVDADRNDALADLAAAAGLPTVATNNVHYATPGRRRLATTVAAVRARRSLDEIDGWL 300

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  +L++ +EM + F+  P A+    E     +F LQ+ AP LP +           
Sbjct: 301  PAAATAHLRSGAEMAARFAAYPGAVARAAEYGAELAFDLQLVAPRLPAYPVPPG----HT 356

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E + LR   + G   R          H + Y  +L+ EL +I  + F GYFL+V D + +
Sbjct: 357  EMSWLRRLTMDGARERYG----PPEAHPEAY-AQLEHELRMIEDLGFPGYFLVVYDIVAF 411

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             +  +I    GRGS A S   YAL IT++D +R  LLFERFL P+R   PD D+D   DR
Sbjct: 412  CRAQDIY-CQGRGSAANSAVCYALRITNVDAVRHRLLFERFLAPERDGPPDIDVDIESDR 470

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI++V  +YG E  AQ+    S + ++A+RDV +A      Q D   K I    +  
Sbjct: 471  REEVIQHVYARYGREHTAQVANVISYRPRSAVRDVAKAFGFSPGQQDAWSKQIDRWGSV- 529

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                          A       ++++  + +L+   RH   H+ G+VI DRP+ ++ P+ 
Sbjct: 530  -------------AAVDVADIPEQVVAYANELQTFPRHLGIHSGGMVICDRPVIEVCPVE 576

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                    V Q++       GL+KFD LGL  L+ L    D +  R   +DL  +  DD 
Sbjct: 577  WGRMPGRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHYGYDLIGSR---LDLGDMTLDDP 633

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664
            E Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y  R
Sbjct: 634  EVYDMLCRADSVGVFQVESRAQMATLPRLKPREFYDLVVEVALIRPGPIQGGSVHPYIRR 693

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723
            KNG+E +   HPL+   L++T GV ++QEQ+MQ+A  L+G+  + AD LRRAM  K+  E
Sbjct: 694  KNGQEPVTYAHPLMRNALEKTLGVPLFQEQLMQLAIDLAGFDAAGADQLRRAMGAKRSVE 753

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M +  +R  +G ++ GI+  +A +++  L  FA YGF +SHA ++A + Y ++W+K ++
Sbjct: 754  RMAQIADRLYAGMAERGITGELADDVYRKLTAFASYGFPESHAMSFAYLVYASSWLKRYH 813

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN--------------------- 822
            P  FLAA +  +       +    DAR+  +++  P +N                     
Sbjct: 814  PGPFLAALLNAQPMGFYSPQTLADDARRHGVEVRRPDINASGAKAVLESTPETRWGSVPG 873

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881
             P   + +G   +   L +++ +G   A  I     A  P+  + D   RV    L    
Sbjct: 874  EPPHAWGLGGPAVRLGLGSVRTLGEDVAERIEAERAAHGPYRDMPDLARRV---GLTAAQ 930

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE+L  A A  CFG +R Q                    ++   +     G  +D  TL 
Sbjct: 931  LEALATADAFACFGLTRRQ----------ALWAAGAAAQDRPGRLPGTVTG--ADPPTLP 978

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
              +      R   +    G     HP    +  L ++G            G  IR+  +V
Sbjct: 979  GMAA---VDRLVADVWATGLSPESHPARFIRDRLDELGAVPIARLGQVPPGQRIRVGGIV 1035

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +Q+  T  G  + ++   +          P
Sbjct: 1036 THRQRPATAGG--VTFLNLEDETGMLNVTCSP 1065


>gi|188591403|ref|YP_001796002.1| Error-prone DNA polymerase [Cupriavidus taiwanensis]
 gi|170938798|emb|CAP63795.1| Error-prone DNA polymerase [Cupriavidus taiwanensis LMG 19424]
          Length = 1050

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 279/1038 (26%), Positives = 439/1038 (42%), Gaps = 64/1038 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA     + ++ A     A+AITD  +L   +    +A  AG++
Sbjct: 10   PDYAELHCLSNFSFLTGASRPEELAERAAQLGYHALAITDECSLAGIVRAHTEAKKAGMR 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D                S+V L    EGY  L EL++   +    K S
Sbjct: 70   LVVGASFHLQNADG-----------SPALSVVALARNREGYGNLCELITLARMRAA-KGS 117

Query: 129  VRICLSWLQ--EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              +    L   E   + L  L       I    +   +   + +       F  R ++ L
Sbjct: 118  YVLTPRDLAAPEAPHQHLKGLPDCL--IIFTPDYGAPADRLDLQAAWVSATFAGRAWMGL 175

Query: 187  Q-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
               +R  D      V   A  H L +VAT              DVL A+     V  +  
Sbjct: 176  NLLYRPLDDIHRGTVEAAAARHHLRVVATGCVTMHVRSRKPMLDVLTAIRVGRPV-PECG 234

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     RS +          L   V IA  C F L       P  +  +      
Sbjct: 235  YDLAPNAEQHLRSRLRLANIYPHRYLTEAVHIANLCQFSLDELRYEYPDEVVPDG----T 290

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR +  AG   R   G           +Q+++ EL ++  M +  YFL V+D ++
Sbjct: 291  TPADYLRTETYAGAHRRFPAG------IPLAVQQQIEHELALVRDMDYERYFLTVSDIVR 344

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+ N I    GRGS A S   Y L IT++DP R +LLFERF++ +R   PD D+DF   
Sbjct: 345  FARSNGIL-CQGRGSAANSAICYCLGITEVDPARGNLLFERFISKERGEPPDIDVDFEHQ 403

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG +R A      + + ++ALRD G+AL +  + VD + K        
Sbjct: 404  RREEVIQYLYRKYGRDRAALAAAVTTYRPRSALRDTGKALGVDPAIVDLVAKSHHWFDGK 463

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               L+  A+               R   ++  L G  RH S H  G V+    LS+LVP+
Sbjct: 464  ADLLKRFAES----GVDAEAELSQRWAHMAVSLLGFPRHLSQHTGGFVLARGKLSRLVPI 519

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604
                 +D  V Q++   ++  GL+K D L L  L+ ++++LD +  QRG   +L  IP +
Sbjct: 520  ENAAMADRSVIQWDKDDLDALGLLKVDVLALGMLSAVRRALDLVAEQRGEAFELQDIPAE 579

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662
            DH TY ++    T+G+FQ+ES      L  +QP    D++  V++ RPGP+   +V+   
Sbjct: 580  DHATYEMICRADTVGVFQIESRAQMSMLPRLQPRTFYDLVIEVAIVRPGPVQGGMVHPYL 639

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721
             R+ G E +      ++  L  T GV I+QEQVMQ+A L +G+S  EAD LRRAM     
Sbjct: 640  RRRQGFEPVTYPSAAMEKALSRTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKR 699

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K  +DK  +R +SG  + G  +  A +IF  +  F +YGF +SHAA++A++ Y +AW+K 
Sbjct: 700  KGGIDKYYDRIVSGMLERGYDREFAESIFRQIQGFGEYGFPESHAASFALLVYASAWLKC 759

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------NRI 835
            H P  FL A +  +        +  QDA++  + ++P  V     D  +          +
Sbjct: 760  HEPEAFLCAMLNSQPMGFYTPSQLVQDAKRHGVTVLPADVAVSGWDSALEPFHAGSRPAV 819

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L+ ++G+    A+ I EA A +PF S  +   R     L+R  L+ L    AL    
Sbjct: 820  RLGLSLLRGMRREAAQRIEEARAIRPFASTAELARRA---ALDRHDLQVLASGNALASIT 876

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R Q L            +            A E           +            +
Sbjct: 877  GGRRQALWQAAAAVPDKDMLRATE-------LAEESA---------ELVPATEGEEIVGD 920

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
             R +G     HPL + +P+L         E          R A +V  +Q+  T  G  +
Sbjct: 921  YRAMGLTLRRHPLALLRPMLSARRFVSAAELAQYQPRQTARAAGLVTVRQRPSTSNG--V 978

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             ++T  +         +P
Sbjct: 979  IFMTLEDETGVVNVIVWP 996


>gi|330469312|ref|YP_004407055.1| error-prone DNA polymerase [Verrucosispora maris AB-18-032]
 gi|328812283|gb|AEB46455.1| error-prone DNA polymerase [Verrucosispora maris AB-18-032]
          Length = 1088

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 289/1052 (27%), Positives = 469/1052 (44%), Gaps = 81/1052 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  H+++S L+GA     ++++       A+A+TD +  +  + F++ A A  +  I
Sbjct: 38   YAELHAHTNFSFLDGASHPEELVEEATRLGLTALAVTDHDGFYGVVRFAEAARALHLPTI 97

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L + +        Q   P P    +++L    EGY RL   ++R +L    K    
Sbjct: 98   FGAELTLGLPG-----PQNGVPDPHGKHLLVLAHGHEGYARLATTIARAHLRGGEKGRPV 152

Query: 131  I-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
               L  +     + +++LTG   G +  A        A + L     LFG + + V L  
Sbjct: 153  YGELEEIAADLRDHVLVLTGCRKGHVPAALLTRGVDAAARELDRLTTLFGAETVAVELTD 212

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    D  R   + +LA    LP VAT N  + +         L AV     + + D   
Sbjct: 213  HGHPIDGDRNDALAELATAAGLPTVATGNVHYATPGRRRLATTLAAVRARRSLDEMDGWL 272

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  +L++ +EM + F+  P A+    E     +F LQ+ AP LP +           
Sbjct: 273  PAAGTAHLRSGAEMAARFAAYPGAVARAAEFGAELAFDLQLVAPQLPAYPVPPG----HT 328

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E + LR    AG   R       +  H Q Y  +LD ELN+I  + F GYFL+V D +++
Sbjct: 329  EMSWLRQLTEAGARERYG----PREAHPQAY-AQLDHELNMIEALGFPGYFLVVYDIVEF 383

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             ++ +I    GRGS A S   YAL IT++D +R  LLFERFL P+R   PD D+D   DR
Sbjct: 384  CRRADIY-CQGRGSAANSAVCYALRITNVDAVRHRLLFERFLAPERDGPPDIDVDIESDR 442

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI++V  +YG E  AQ+    S + ++A+RDV +A      Q D   K I       
Sbjct: 443  REEVIQHVYARYGREHTAQVANVISYRPRSAVRDVAKAFGFSPGQQDAWSKQIDRWGDV- 501

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                          A       ++++  + +++   RH   H+ G+VI DRP+ ++ P+ 
Sbjct: 502  -------------AAVDVPEIPEQVIAYANEVQTFPRHLGIHSGGMVICDRPVIEVCPVE 548

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                    V Q++       GL+KFD LGL  L+ L    D +   G+ +DL     DD 
Sbjct: 549  WGRMPGRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHYGYDMI---GMSLDLGEETLDDP 605

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664
            E Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y  R
Sbjct: 606  EVYDMLCRADSVGVFQVESRAQMATLPRLKPREFYDLVVEVALIRPGPIQGGSVHPYIRR 665

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723
            KNG+E +   HPL+   L++T GV ++QEQ+MQ+A  L+G+  +EAD LRRAM  K+  E
Sbjct: 666  KNGQEPVTYAHPLMRNALEKTLGVPLFQEQLMQLAIDLAGFDAAEADQLRRAMGAKRSVE 725

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M +  +R  +G ++ GI+  +A +++  L  FA YGF +SHA ++A + Y ++W+K ++
Sbjct: 726  RMARIADRLYAGMAQRGITGELADDVYRKLTAFASYGFPESHAMSFAYLVYASSWLKRYH 785

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN--------------------- 822
            P  FLAA ++ +       +    DAR+  +Q+  P VN                     
Sbjct: 786  PGPFLAALLSAQPMGFYSPQTLVDDARRHGVQVRRPDVNASGVKPVLESTAETRWGSQPG 845

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881
             P   + +G   +   L+ ++ +G   A+ I+    A  P+  + D   RV    L    
Sbjct: 846  EPPHAWGLGGPAVRLGLSGVRTLGEPVAQRIVAERSAHGPYRDMPDLARRV---GLTAAQ 902

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE+L  A A  CFG +R Q                    ++ + +     G  +      
Sbjct: 903  LEALATADAFACFGLTRRQ----------ALWAAGAAAQDRPDRLPGTVTGAAA-----P 947

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                  +  R   +    G     HP    +P L  MG    +       G  IR+  +V
Sbjct: 948  TLPGMEAVDRLVADVWATGLSPENHPARFIRPQLEAMGAVPIDRLGRVEPGRRIRVGGIV 1007

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +Q+  T  G  + ++   +          P
Sbjct: 1008 THRQRPATAGG--VTFLNLEDETGMLNVTCSP 1037


>gi|71907571|ref|YP_285158.1| DNA polymerase III, alpha subunit [Dechloromonas aromatica RCB]
 gi|123760519|sp|Q47EP3|DNAE2_DECAR RecName: Full=Error-prone DNA polymerase
 gi|71847192|gb|AAZ46688.1| error-prone DNA polymerase, DnaE-like protein [Dechloromonas
            aromatica RCB]
          Length = 1027

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 276/1032 (26%), Positives = 450/1032 (43%), Gaps = 69/1032 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA     +  +  A    A+A+TD  +L   +     A   G++
Sbjct: 4    PEYAELHCLSNFSFLRGASHPEELAARALAQGYAALALTDECSLAGVVRAHLAAKKHGLK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G ++                       +V L     GY  L  L++      + K  
Sbjct: 64   FIVGSEM----------------MTVDGLKLVFLACNRHGYGNLSALITLARRRAE-KGG 106

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  + L+ I   G   L       +      N+   A+         F  R ++ ++ 
Sbjct: 107  YTLHRNDLESISPSG--ALPDCLVLWVP----GNNPSSAD--GEWLVSRFPGRSWIAVEL 158

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    D  R + +  L     LPLVAT +     +      DVL A+   + V +     
Sbjct: 159  HAGPEDAERLAGLQSLGEVCGLPLVATGDVHMHIKARRPVQDVLTALRLKSTVFEAGYAL 218

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              P+     RS +       PE L  T+ IA RC F+L       P  I    +      
Sbjct: 219  F-PNGERHLRSRLRLSRLYPPELLAETLNIAARCEFLLDELRYEYPEEIIPSGE----TP 273

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR++   GL+ R   G           R+R++ EL +IA M +  YFL V D + +A
Sbjct: 274  ASWLRSETERGLQRRYPAGV------PGSVRERIEHELGLIAEMAYEAYFLTVYDIVCYA 327

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  +I    GRGS A S   YAL +T++DP R +LLFERF++ +R   PD D+DF  +RR
Sbjct: 328  RSQDIL-CQGRGSAANSAVCYALGVTEVDPARSALLFERFVSKERGEPPDIDVDFEHERR 386

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            ++VI+Y+  KYG ER A      + + K ALRD GRAL    +Q++ L   +        
Sbjct: 387  EDVIQYIYTKYGRERAALAAALITYRTKGALRDAGRALGFGIAQINALTASLAWWDKREQ 446

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +  A+           P V++ L I++ L G  RH + H  G VI   PLS+LVP+  
Sbjct: 447  LPERFAE----LGLDPHAPRVEKWLAIAEALRGFPRHLTQHVGGFVISRGPLSRLVPVEN 502

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
               S   V Q++   ++  GL+K D L L  L+ +++ L  + +     + +  IP +D 
Sbjct: 503  AAMSARSVIQWDKDDLDAMGLMKVDILALGMLSAIRRMLQIVGETTGRPMKMQDIPAEDP 562

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   +V+    R
Sbjct: 563  ATYEMLCHADSMGVFQVESRAQMAMLPRLRPQNFYDLVVEVALVRPGPIQGDMVHPYLKR 622

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IKE 723
            + G+E+I  I P +D +L+ T GV I+QEQVMQ+A + + ++  EAD LRRAM     K 
Sbjct: 623  RQGRERIEEISPAVDAVLERTYGVPIFQEQVMQLAVVAANFTPGEADQLRRAMAAWKRKG 682

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             ++  +++ ++G + N + ++ A  I   +  F +YGF +SHAA++A++ Y +AW+K H+
Sbjct: 683  GLEPFEQKLLAGMAANDLPESFARRIIAQIQGFGEYGFPESHAASFALLVYASAWLKRHH 742

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAI 842
            P  FL   +  +           QDAR+  ++++PP V T   D ++ +   +   L  I
Sbjct: 743  PAAFLCGLLNSQPMGFYSPSMLIQDARRHGVRVLPPDVMTSDWDSRLDERGAVRLGLREI 802

Query: 843  KGVGTTTARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             G     A+ I      ++PF ++ D  +R     L RR L+ L    AL      R Q 
Sbjct: 803  SGFSVAAAKRITAVCRENQPFLNVADLAARA---GLQRRDLDLLAAGDALQGLAGHRRQ- 858

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
                                   ++F       ++     +    +       + R LG 
Sbjct: 859  -----------AAWAATVAVVQGDLFDGTPVVEAEI----ELPAPSDGENLVADYRSLGL 903

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
                HPL + +  L +       +         IR   +VV +Q+  T  G  I +VT  
Sbjct: 904  TLRSHPLSLLRQYLAERRFVTAADLKMAGHHTLIRSVGIVVGRQRPGTATG--IVFVTLE 961

Query: 1022 EPAKEYEANFFP 1033
            +          P
Sbjct: 962  DETGLSNVVVHP 973


>gi|289629057|ref|ZP_06462011.1| error-prone DNA polymerase [Pseudomonas syringae pv. aesculi str.
            NCPPB3681]
 gi|289649726|ref|ZP_06481069.1| error-prone DNA polymerase [Pseudomonas syringae pv. aesculi str.
            2250]
 gi|330867026|gb|EGH01735.1| error-prone DNA polymerase [Pseudomonas syringae pv. aesculi str.
            0893_23]
          Length = 1031

 Score =  599 bits (1545), Expect = e-169,   Method: Composition-based stats.
 Identities = 267/1043 (25%), Positives = 454/1043 (43%), Gaps = 82/1043 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     +  L   S++S   GA S   + ++ +     A+AITD   L   +   Q + +
Sbjct: 1    MTSE--YAELHCLSNFSFQRGASSARELFERASRHGYQALAITDECTLAGIVRAWQASIS 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+  IIG ++ I+                  P  VLLV +  GY+ L +L++       
Sbjct: 59   TGLPLIIGSEMHIENG----------------PKAVLLVESQTGYEALCKLITVARRR-A 101

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K   R+      E  ++GL+ +                +Q         ++ F +RL++
Sbjct: 102  RKGEYRLLREDF-EPSSDGLLAIWLPD--------IEGDAQACLAHGRWLRERFAERLWL 152

Query: 185  NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQ 242
             ++ HRG  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V   
Sbjct: 153  GVELHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEA 212

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                    + +L+    +   + D   A   +V IARRC+F L+      P  +  +   
Sbjct: 213  GHLLFANGERHLRPLDALAEHYPDWLLA--ESVRIARRCTFDLKQLKYEYPHELVPKG-- 268

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +   + LR     G   R   G           R +++ EL +I   KF  YFL V D
Sbjct: 269  --QTPTSWLRELTERGARKRWPNGL------TPATRAQVEKELALITEKKFDSYFLTVHD 320

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+  +I    GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF
Sbjct: 321  IVEFARSQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERNEPPDIDVDF 379

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              DRR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L       
Sbjct: 380  EHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGAVRDVAKVLGLPPDQINALADAFSRW 439

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                 S + + +           P + R+L ++ +L G  RH S H  G VI + PL  L
Sbjct: 440  SDSLPSPERLREY----GFDADMPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETL 495

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601
            VP+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +   RG    L+ +
Sbjct: 496  VPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKLWTLADL 555

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD +TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V+
Sbjct: 556  PGDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVH 615

Query: 662  N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                R+N +E I    P +  + + T GV ++QEQVM++A + + Y+  EAD LRRAM  
Sbjct: 616  PYLRRRNKEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEADELRRAMAA 674

Query: 720  KIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
              +    +  +ER  +G  KNG     A  IFE +  F  YGF +SHAA++A+++Y + W
Sbjct: 675  WKRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCW 734

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831
            +K H P  F  A +           +  QDAR+ +I+I P  V     D  +        
Sbjct: 735  LKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDS 794

Query: 832  --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              +  I   L  ++G     AR I  A + + F    D   R     L+ R  E+L  +G
Sbjct: 795  TRNLAIRLGLRMVRGFREDDARRIETARSKRLFSDATDLTLRA---GLDARAAEALADSG 851

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            AL      R +    +  +                 +F       +         +   +
Sbjct: 852  ALRGLIGHRHRARWEVAGV------------EAQRPLFNDLPSEDTQ----VTLPLPTVA 895

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 +   LG     HPL + +  L     +  ++ +       + +A +V+ +Q+  T
Sbjct: 896  EDLMADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLHLENDRTLSVAGLVIGRQRPGT 955

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
              G  + +VT  +         +
Sbjct: 956  ASG--VTFVTLEDEFGMVNVVVW 976


>gi|296114706|ref|ZP_06833357.1| DNA polymerase III, alpha subunit [Gluconacetobacter hansenii ATCC
            23769]
 gi|295978740|gb|EFG85467.1| DNA polymerase III, alpha subunit [Gluconacetobacter hansenii ATCC
            23769]
          Length = 1057

 Score =  599 bits (1543), Expect = e-168,   Method: Composition-based stats.
 Identities = 278/1042 (26%), Positives = 459/1042 (44%), Gaps = 74/1042 (7%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P +  LQ  + +S L GA S   +  +  A    A+ I D N+L   ++    A   
Sbjct: 3    PSAPRYAELQGTTYFSFLRGASSPIELFAQAKALGVEALGICDRNSLAGMVQAHVAAKEV 62

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G++ ++GC+LD+                   P +++       Y RL  L++       G
Sbjct: 63   GLRLVVGCRLDLAD----------------FPPVLVYPMDRAAYGRLCRLLTIGKAR-AG 105

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            K    +    L   G EG I++               +       L   K  F DR ++ 
Sbjct: 106  KGKCHLLWEDLVAWG-EGQIVI----------MIPNTADDACGLHLRKLKDAFADRAFMA 154

Query: 186  LQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L    R  D+ R  ++  LA+   +P V TN+ LF +       DV+  + H+T + +  
Sbjct: 155  LTLLRRPNDQMRLYELANLAHQARVPTVVTNDVLFHTHNRRILQDVVTCIRHNTTIDEAG 214

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              R    D YLK   EM  +FS  PEA+  T++I  RC F L   A         E    
Sbjct: 215  FVRERHADRYLKPPQEMARLFSRYPEAVARTMDIVERCRFSLDDLAY----QYPDEVSVP 270

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +  +  L             +G         +  Q L+ ELN+I RM+++ YFL V   
Sbjct: 271  GQTPQQALETLTWEAAARTYPEG------IPDEVCQSLNHELNLIGRMQYAPYFLTVNSI 324

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +A+  +I    GRGS A S   Y L IT IDP R SLLFERF++ +R   PD D+DF 
Sbjct: 325  VHYARSQDIL-CQGRGSAANSAVCYVLGITAIDPARNSLLFERFVSEERGEPPDIDVDFE 383

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RR++VI++V   YG +R A        +AK ALRDVG+ + +P   +  L   I    
Sbjct: 384  HARREQVIQWVYEHYGRDRAALTAVVIRYRAKGALRDVGKVMGLPEDLIRTLSGQIHGW- 442

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +   A+ D        L+D  +   L++++ L G  RH S H  G V+    L +LV
Sbjct: 443  GRKLDDDALNDT----GIDLSDRRIRLTLDLARCLIGAPRHLSQHPGGFVLTHDRLDELV 498

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+         + +++   I+    +K D L L  LT ++K LD L +       L  IP
Sbjct: 499  PIEPASMEQRQIIEWDKDDIDVLKFMKVDILALGMLTCMKKGLDLLGEHKGQHFTLQSIP 558

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+ 
Sbjct: 559  GEDPRTYAMIRKADTIGVFQIESRAQMSMLPRLKPRVFYDLVIEVAIVRPGPIQGDMVHP 618

Query: 663  --NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
               R+ G E+     P ++ +L +T G+ ++QEQ MQ+A + +G++ +EAD LRRAM   
Sbjct: 619  YLRRREGLEREDYPTPELEAVLSKTLGIPLFQEQAMQVAMICAGFTAAEADQLRRAMATF 678

Query: 721  -IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
                 + + + R I G   NG  +  A  I++ L  F  YGF +SHAA++A+++Y ++WM
Sbjct: 679  KNTGTVSQFQTRLIEGMRANGYDEEFAERIYQQLEGFGSYGFPESHAASFAILAYSSSWM 738

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------ 833
            K  +P  FLA+ +  +        +  +DAR+  ++I P  VN    D  +         
Sbjct: 739  KCTHPDVFLASLLNSQPMGFYAPAQLVRDAREHGVEIRPVCVNASRWDSTLEGPESPNGL 798

Query: 834  -RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              +   ++ +KG+    A  I+ A A +PF S++D   R   K      L  L  A A  
Sbjct: 799  FAVRLGMSLVKGLANDDAARIVAARASRPFTSVDDLWRRAGVKA---AALTHLAEADAFR 855

Query: 893  -CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
               G +R + L ++  ++                +FA  + T   +              
Sbjct: 856  PSLGLARREALWAIKALRDE-----------PLPLFAAAQVTREAEEPDVLLQPMRDGAE 904

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +   LG     HPL   +  L++ GI    +++    G  + +A +V+ +Q+  + +
Sbjct: 905  VVRDYNRLGLSLRDHPLAFLRKDLQEQGILPCRQALNAKDGKRLTVAGLVLVRQRPGSAE 964

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G  + ++T  +         +P
Sbjct: 965  G--VVFMTLEDETANMNVIIWP 984


>gi|254672044|emb|CBA04625.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha275]
          Length = 991

 Score =  599 bits (1543), Expect = e-168,   Method: Composition-based stats.
 Identities = 373/938 (39%), Positives = 541/938 (57%), Gaps = 30/938 (3%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + + P+++ L++H+ +S+ +G + +  ++ K      PA+ I+D  N F  ++F +    
Sbjct: 1   MTE-PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRG 59

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LD 123
           AGI+PI    + I                      +L++    GY RL EL++  Y+  D
Sbjct: 60  AGIKPIGAADVWI----------GNPNAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKD 109

Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
           +      +   WL+     GLI L+G   G +       +   A    L +   F D  Y
Sbjct: 110 RNVHHAELNPEWLENGDNSGLICLSGAHYGEVGVNLLNGNEDAARAAALKYAAWFPDAFY 169

Query: 184 VNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
           + LQR   R       S  V+LA    LP+VAT+ + F+S +D+ AH+  + +A   V++
Sbjct: 170 LELQRLPERPEWEACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLT 229

Query: 242 QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            K RPR  TP  +      M   F+DLPEALENTVEIA+RC+  + +    LP F   + 
Sbjct: 230 DKKRPRDFTPGQFFIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDG 289

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIARMKFSGYF 357
             +    ++ L   +  GL+ R+ Q    +   A    +Y++RLDFELN+I +MKF GYF
Sbjct: 290 LSL----DDYLIKLSNEGLQERMVQLYPDEAERAAKMPEYQKRLDFELNIIIQMKFPGYF 345

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           LIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP+R+SMPD
Sbjct: 346 LIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPD 405

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
           FD+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P+   D+L K
Sbjct: 406 FDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSK 465

Query: 478 LIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
           LIP +   P+    A+  + + +E   A    D L+ +++KLE L R    HA G++I  
Sbjct: 466 LIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHAGGVLIAP 524

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
             +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +       
Sbjct: 525 GKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIKNTTGDI 584

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
           VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VSLYRPGP+
Sbjct: 585 VDVGKIPLDDQAAYQIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPM 644

Query: 656 DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
           DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL  AD+LRR
Sbjct: 645 DNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRR 703

Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
           AMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAAYA+ISYQ
Sbjct: 704 AMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQ 763

Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-R 834
           TAW+K HYP EF+AA+M+ E+DN +++K F  D R   I+ +PP +N     F    N +
Sbjct: 764 TAWLKAHYPAEFMAATMSSELDNTDQLKHFYDDCRANGIEFLPPDINESDYRFTPYPNMK 823

Query: 835 IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
           I Y+L AIKG G      I+ A      F  L +FC RV  + +NRR LE+L+  GA D 
Sbjct: 824 IRYALGAIKGTGEAAVESIIAARQSGGKFTGLLNFCERVGKEHMNRRTLEALIRGGAFDS 883

Query: 894 FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
              +R  LL ++D     A   +K        +F H+ 
Sbjct: 884 IEPNRAMLLANIDLAMDNAD--QKAANANQGGLFRHDG 919


>gi|87307671|ref|ZP_01089815.1| DNA polymerase III alpha subunit [Blastopirellula marina DSM 3645]
 gi|87289841|gb|EAQ81731.1| DNA polymerase III alpha subunit [Blastopirellula marina DSM 3645]
          Length = 1033

 Score =  599 bits (1543), Expect = e-168,   Method: Composition-based stats.
 Identities = 282/1028 (27%), Positives = 465/1028 (45%), Gaps = 65/1028 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L   +++S LE A     ++ +       A+AITD ++L   +  +  A   G++ 
Sbjct: 9    RYAELYCRTNFSFLEAASHPEELVARAQELDYAALAITDFSSLAGVVRANTAAKECGLKI 68

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG ++                       +VL      GY  L  L++        K   
Sbjct: 69   LIGVEIT----------------PTDGWPVVLWAKNRAGYANLCRLITTGRRR-APKGEC 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            ++ ++ +       L+       G +  A   NS Q + + +  ++++FG   Y+  Q  
Sbjct: 112  QLTVADIAA-HAAHLLC------GVVSPA---NSEQFSPQGVGRYREIFGAGGYLLAQLQ 161

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-R 247
            RG  D  R   +  L+    LPLVA    LF + +    HDVL A+ H T V+Q     +
Sbjct: 162  RGPHDHDRVDCLQTLSQQTRLPLVAAGGVLFHTPKRKPLHDVLTAIRHHTTVAQAGPYLQ 221

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + +L+ R  +  +F+ LP A+E TVEIA +C+F L       P  +           
Sbjct: 222  TNAERHLRERDVIARLFAGLPHAVERTVEIADQCTFSLDELRYEYPEELAPPGM----TP 277

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     G  +R        G      R+ L  EL +I  +++  YFL V D +++A
Sbjct: 278  IEYLRQLTWQGAAMRYP------GELPTKIRELLQHELTLIEELRYEPYFLTVWDLVRFA 331

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  +I    GRGS A S   Y L +T +DP R ++LFERF++ +R   PD D+DF  +RR
Sbjct: 332  RTRDIL-CQGRGSAANSAVCYCLGVTAVDPGRVNVLFERFISRERDEAPDIDVDFEHERR 390

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++Y+  KYG ER        + + ++A+RDVG+AL +    VDRL K   +  A   
Sbjct: 391  EEVLQYLYEKYGRERAGMTAVTITYRPRSAIRDVGKALGLSLDLVDRLAKNADHYRAPTD 450

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                  +               + L + Q+L G  RH S H  G+VI   PL  LVP+  
Sbjct: 451  FQVRCRE----AGLDGRSSVGRQFLYLVQQLIGFPRHLSQHTGGMVITRGPLHDLVPIEN 506

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDH 606
                   V ++N   ++  G++K D L L  LT ++K    + Q   +   L+ IP  D 
Sbjct: 507  AAMPGRTVVEWNKDDLDDLGILKVDCLALGMLTAIRKCFALIEQTTGQLHTLASIPEGDE 566

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
            + Y ++    T+G+FQ+ES      L  +QP C  D++  V++ RPGPI   +V+    R
Sbjct: 567  QVYEMICQADTIGVFQIESRAQMSMLPRLQPRCYYDLVIEVAIVRPGPIQGDMVHPYLRR 626

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE- 723
            ++G+E+    +  I  +L++T GV ++QEQ MQ+A + +G++  EAD LRRAMG   +  
Sbjct: 627  RSGEEEATYPNDAIQGVLEKTLGVPLFQEQCMQLAIVAAGFTPGEADQLRRAMGAWRRPG 686

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +D+ + + + G  +NG+S   A  +F  +  F +YGF +SHAA++A++ Y +AW+K HY
Sbjct: 687  VIDQFRIKLLEGMQRNGLSGDFAERVFLQIRGFGEYGFPESHAASFALLVYVSAWLKCHY 746

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P EF AA +  +        +  QDAR+ ++ I P  VN    D  +    +   L  I 
Sbjct: 747  PAEFAAAIINSQPMGFYAPAQLIQDARKHDVAIRPIEVNNSDWDCTIETGALRLGLRMIG 806

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            G+    A+ IM A  D  F SL DF  R     L +  +  L  A AL     +R   L 
Sbjct: 807  GLQQAAAQAIMTARRDGRFHSLSDFAKRT---ALPQSQILPLAEADALSSMNPTRRDALW 863

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
            ++  +         +   + + +F   +      + L              + R  G   
Sbjct: 864  NVLGV---------DAPTRQKTLFDDLEPDAEPPVWLP---AMLPEEEVHADYRTTGLSL 911

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
              HPL  ++  L  +G+       A      +++A +V+ +Q+  T KG  I +VT  + 
Sbjct: 912  RAHPLSFHRERLTMLGVTSAAALAAIANNAAVKVAGIVLLRQRPSTAKG--ITFVTLEDE 969

Query: 1024 AKEYEANF 1031
                    
Sbjct: 970  TGVANLVI 977


>gi|312961389|ref|ZP_07775894.1| DNA polymerase III alpha subunit [Pseudomonas fluorescens WH6]
 gi|311285047|gb|EFQ63623.1| DNA polymerase III alpha subunit [Pseudomonas fluorescens WH6]
          Length = 1030

 Score =  599 bits (1543), Expect = e-168,   Method: Composition-based stats.
 Identities = 281/1033 (27%), Positives = 447/1033 (43%), Gaps = 76/1033 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  L   S+++   GA S   + ++       A+AITD   L   +   Q A A  +  
Sbjct: 9    SYAELPCLSNFTFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVDLPL 68

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ I+                  P +VLLV    GYQ L  L++      Q K S 
Sbjct: 69   IIGSEVRIENG----------------PKLVLLVQDLSGYQHLCRLITLARRRAQ-KGSY 111

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+      +    GL+ L          +                ++ F +RL++ +  H
Sbjct: 112  RLLHDDFAQPLP-GLLALWVAEDSDTQTSI------------QWLRQTFAERLWLAVHLH 158

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                D     Q ++LA +  +P VA  +    +       D + A+ H   V++    R+
Sbjct: 159  CGQDDARHLQQRLRLAASLRIPAVACGDVHMHARGRRALQDTMTAIRHHVPVAEAG-TRL 217

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             P+     RS            L+ T  IARRC+F L       PR +  E  D      
Sbjct: 218  HPNGERHLRSLDALRALYPQALLDETQRIARRCTFDLGQLRYHYPRELVPEGHD----AA 273

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR     G+  R  +G  A         Q+++ EL +I R+ +  YFL V D +++A+
Sbjct: 274  SWLRTVTEEGIAQRWPEGIDA------KTLQQINHELALIGRLGYESYFLTVHDIVRFAR 327

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              +I    GRGS A S   +AL IT+I+P   ++LFERFL+ +R   PD D+DF  +RR+
Sbjct: 328  SRSIL-CQGRGSAANSAVCFALGITEINPSLTNMLFERFLSEERNEPPDIDVDFEHERRE 386

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EV++YV  +YG  R A      S  A  A+RDV +AL +P  Q++ L             
Sbjct: 387  EVLQYVFQRYGRTRAALTAVVSSYHASGAVRDVAKALGLPPDQINALADCCGRWSDDAPP 446

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            L+ +    R        P + R+L ++Q+L G  RH S H  G VI + PL  LVP+   
Sbjct: 447  LERL----REAGFDPDSPLLRRVLTLTQQLIGFPRHLSQHPGGFVISEYPLDTLVPVENA 502

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHE 607
              ++  + Q++   ++  GL+K D L L  L+ +++  D     R + + L+ IP +D  
Sbjct: 503  AMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLLRRHRNLDLALATIPKEDPA 562

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665
            TY +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R+
Sbjct: 563  TYAMISKADTIGVFQIESRAQMSMLPRLKPQTFYDLVIEVAIVRPGPIQGGMVHPYLRRR 622

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N +EK     P +  +L+ T G+ ++QEQVMQIA + + YS  EAD LRR+M    +   
Sbjct: 623  NKEEKTTYPSPQLKTVLERTLGIPLFQEQVMQIAMVAADYSPGEADQLRRSMAAWKRHGG 682

Query: 726  -DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
             +  +ER  +G   NG ++  A  IFE +  F  YGF +SHAA++A+++Y + W+K H P
Sbjct: 683  LEPHQERLRTGMLNNGYTEAFAAQIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEP 742

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYYSL 839
              F  A +           +  QDAR+  +QI P  V     D  +         I   L
Sbjct: 743  AAFACALINSWPMGFYSPDQILQDARRHRLQIRPVDVQASDWDCSLEPIDGQQPAIRLGL 802

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
              I G      R +  A     F  + D   R     L+ R    L  AGAL     +R 
Sbjct: 803  RMISGFREEDGRRLEAARRRGVFRDIADLDQRA---GLDARAQALLADAGALRALAGNRH 859

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            Q    +  +                 +FA   G     + L              +   +
Sbjct: 860  QARWEVAGVHT------------QLGLFAGLPGPDEAVVALP---TPTVGEDLHADYATV 904

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G     HPL + +  LRK   +   E +A   G N+ +  +V  +Q+  T  G  + +VT
Sbjct: 905  GTTLGPHPLALLRDELRKRRCRSSRELMAVEHGRNVSVVGLVTGRQRPGTASG--VTFVT 962

Query: 1020 FSEPAKEYEANFF 1032
              +         +
Sbjct: 963  LEDEFGNLNVVVW 975


>gi|183981180|ref|YP_001849471.1| DNA polymerase III, alpha chain, DnaE2 [Mycobacterium marinum M]
 gi|183174506|gb|ACC39616.1| DNA polymerase III, alpha chain, DnaE2 [Mycobacterium marinum M]
          Length = 1100

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 282/1038 (27%), Positives = 490/1038 (47%), Gaps = 59/1038 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S ++  L  HS+YS L+GA +   ++++ A     A+A+TD N L+ A+ F++ A   G
Sbjct: 60   SSIAYAELHAHSAYSFLDGASTPEELVEEAARLDLRALALTDHNGLYGAVRFAEAASGLG 119

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ + G +L +  +       + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 120  VRTVFGAELSLGPE------ARTEQPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 173

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
               R     L E       +LTG   G + +A        AE+ L      F   R+ V 
Sbjct: 174  GKPRYDFDSLTEAAGGHWHILTGCRKGHVRQALRQGGPDAAERALADLVDRFTAGRVSVE 233

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L  H    D    + +  LA    + +VAT  + F           + A+     +    
Sbjct: 234  LTHHGHPLDDENNAMLAGLAPRFGVGVVATTGAHFAHPARSRLAMAMGAIRARQSLDSAA 293

Query: 245  RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     +L++ +EM  +F+  P+ +    E+  +C+F L + AP LP F   +    
Sbjct: 294  GWLAPLGGSHLRSGAEMARLFAQRPDVVTAAAELGEQCAFGLALIAPRLPPFDVPDG--- 350

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E++ LR+  ++G   R   G+  +   A+    +++ EL VIA++ F GYFL+V D 
Sbjct: 351  -HTEDSWLRSLVMSGARERY--GSTERSPRARKAYTQIEHELKVIAQLSFPGYFLVVHDI 407

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
             Q+ ++N+I    GRGS A S   YAL +T +DP+   LLFERFL+P+R   PD DID  
Sbjct: 408  TQFCRRNDIL-CQGRGSAANSAVCYALGVTAVDPIANELLFERFLSPERDGPPDIDIDIE 466

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+R++VI+YV NKYG +  AQ+    + + ++A+RD+ RAL     Q D   K I +  
Sbjct: 467  SDQREKVIQYVYNKYGRDYAAQVANVITYRGRSAVRDMARALGFSQGQQDAWSKQIGHWN 526

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            A P  ++ I +               ++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 527  ATPDDVEGIPE---------------QVIDLAAQIRNLPRHMGIHSGGMVICDRPIADVC 571

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+     +D  V Q++       GL+KFD LGL  L+ L  + D +A+   ++VDL+ + 
Sbjct: 572  PVEWARMADRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYARDLVAEHKGIEVDLARLD 631

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660
              +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  
Sbjct: 632  LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 691

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R+NG + +V  HP ++  L++T GV ++QEQ+MQ+A   +G+S +EAD LRRA+  K
Sbjct: 692  YIRRRNGIDPVVYEHPSMESALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAIGSK 751

Query: 720  KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            +  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A + + ++W
Sbjct: 752  RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSSW 811

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836
             K H+P  F AA +  +       +    DAR+  + +  P VN       +     ++ 
Sbjct: 812  FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVLVHGPDVNASLAHATLENAGMQVR 871

Query: 837  YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L A++ +G   A  ++     + PF SL +  SRV   +L+    E+L  AGAL CFG
Sbjct: 872  LGLGAVRHIGDDLAESLVAERNDNGPFASLLNLTSRV---QLSVPQTEALATAGALGCFG 928

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             SR +                   T + + +      +      +      +      ++
Sbjct: 929  MSRRE----------ALWAAGAAATQRPDRLPGVGSSS-----HIPTLPGMSELELAASD 973

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     +P    +  L  +G+      ++   G  + +A  V  +Q+  T +G  +
Sbjct: 974  VWATGISPDSYPTQFLRADLDALGVLAAAALLSVPDGERVLIAGAVTHRQRPATAQG--V 1031

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             ++   +          P
Sbjct: 1032 TFINLEDETGMVNVLCTP 1049


>gi|312869124|ref|ZP_07729298.1| DNA polymerase III, alpha subunit [Lactobacillus oris PB013-T2-3]
 gi|311095370|gb|EFQ53640.1| DNA polymerase III, alpha subunit [Lactobacillus oris PB013-T2-3]
          Length = 1113

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 334/1028 (32%), Positives = 537/1028 (52%), Gaps = 50/1028 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V L+VHSSYSLL+    + +++         A+A+TD N L+ A++F   A  AGI+P+
Sbjct: 3    YVPLEVHSSYSLLQSPTRIPDLVKAAKQRGYTALALTDQNILYGAVDFYNTARQAGIKPL 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ + + +             +   + LL    +GY+ L+++ +R    ++GK    
Sbjct: 63   LGLEITVALDE----------LAGSQLKMTLLAKNEQGYRNLMDISTRQQTAERGK---T 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I  + L  +  E +++L      P+  A   N  +     L + ++  G  LY+ +  + 
Sbjct: 110  ITFTELAGLLKEVVVIL------PVQLAVL-NLIRQGTGWLTSLQQTVGRNLYLGI--NL 160

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D    S + + A    +P+VAT    +L+  D  A   L A+     ++  D      
Sbjct: 161  QLDEVERSSLQRFAQEAGVPIVATTPVDYLNATDLFATKTLQAIGQGAQLTDLDAQATAT 220

Query: 251  DHYLKNRSEMVSIFSDL---PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                    + V           A++NT  IA +C+  L+  AP+LP +     +      
Sbjct: 221  GDNYLPVRQQVEAAYHQLGLAAAVDNTAVIADQCNVELKFQAPVLPHYQTPHGE----TA 276

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR   +AGL+ R     +A GY A  YRQRLD EL +I RM F  YFLIV D + +A
Sbjct: 277  VDYLRQLCLAGLKKR----PLAAGYSATAYRQRLDHELAIIHRMGFDDYFLIVWDVMNFA 332

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +  I   PGRGS AGS+ AYAL IT++DPL + LLFERFLNP+R  MPD D+D   +RR
Sbjct: 333  HRTKITTDPGRGSAAGSLVAYALAITEVDPLEYQLLFERFLNPERAQMPDIDLDIPDNRR 392

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV+ YV  KYGHERVAQIITFG+L AK  LRDV R  ++   +   L   +P   +  +
Sbjct: 393  EEVLAYVHRKYGHERVAQIITFGTLAAKQVLRDVSRVFKLTKFETTTLLDALPRGGSFTL 452

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              QA+A+  R +      P + +L +++++LEGL RH STHAAGIV+   PL ++VP+  
Sbjct: 453  D-QALAESQRLKNLLNDQPKLRQLFQVARQLEGLPRHYSTHAAGIVLSAAPLHEIVPLQ- 510

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
                 L +TQF    +E  GL+K DFLGL+ L+++  +L  + Q+  +  L  +   D  
Sbjct: 511  AGSEGLLMTQFPKDTVEALGLLKMDFLGLRNLSIMDNTLRMIRQQEPQFSLERVSLADPA 570

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T G+FQ ES+G+R  L  + PD  EDI+A+ +LYRPGP++NI  +  RK G
Sbjct: 571  TLQLFQRGQTDGVFQFESAGIRNVLTALHPDHFEDIVAVNALYRPGPLENISHFIARKQG 630

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E +      + P+L  T G+++YQEQVMQ+A  ++G++L EAD+LRRAM KK K+ MD 
Sbjct: 631  QEPVRLPDQSLAPILAPTYGILVYQEQVMQLASAMAGFTLGEADLLRRAMSKKKKQTMDN 690

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             + +F++GA   G    +A  +F+ + +FA+YGFN+SHA AY+ ++++ A++K HYP EF
Sbjct: 691  MRAKFMAGARAKGYQSALASQVFDYIDQFANYGFNRSHAVAYSKMAFEMAYLKCHYPTEF 750

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A +  E +  +  +     A++  ++I  P +N     F V D +IY+ L AIKG   
Sbjct: 751  YTALLNAEGNITKLRQHVTN-AQRMGVKINGPRINLSRAQFTVHDQQIYFGLTAIKGGRR 809

Query: 848  TTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 +++   ++  F  + D   R+  K     VL  L++AGALD  GY+R ++++SL 
Sbjct: 810  DFIADLLQERDSNGSFKDIRDLIHRLPDKWQKEEVLTPLIYAGALDGLGYNRAEMIESLP 869

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
            N+    + +                G  S + ++        + R   E  +LG Y SGH
Sbjct: 870  NLLSGIELLAT---------LPGLSGDPSLQSSISHRQEYPLTTRLAKENELLGVYLSGH 920

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG-SRIGWVTFSEPAK 1025
            P+  Y+ +  ++      +         + L   +   +   T+K    + +++ S+ + 
Sbjct: 921  PVSQYRQLASRLRAGRVADL---RPNQRVTLILFINRVKVIHTKKDHRPMAFISGSDESG 977

Query: 1026 EYEANFFP 1033
              +   FP
Sbjct: 978  LLDVTVFP 985


>gi|330503437|ref|YP_004380306.1| error-prone DNA polymerase [Pseudomonas mendocina NK-01]
 gi|328917723|gb|AEB58554.1| error-prone DNA polymerase [Pseudomonas mendocina NK-01]
          Length = 1022

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 270/1034 (26%), Positives = 462/1034 (44%), Gaps = 78/1034 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              +  L   S+++   GA S   + ++ A     A+AITD   L   +   + +   G++
Sbjct: 2    SDYAELHCLSNFTFQRGASSAQELFERAARLGYRALAITDECTLAGIVRAWEASKKTGVK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G ++ I+                  P +VLL    EGYQ L  L++R       K +
Sbjct: 62   LIVGSEVQIE----------------KGPKLVLLAENLEGYQALCGLITRARRRAA-KGT 104

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+       +  +GL+ +                S+     L   + +F +RL++ ++ 
Sbjct: 105  YRLLHEDFV-VPLDGLLAIW--------------LSEGEATALPWLRSVFPERLWLGVEL 149

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HRG D   R  ++++LA  H+LP VA  +    +       D + A+ H   V++     
Sbjct: 150  HRGADDSARLQRLLELAAVHDLPTVACGDVHMHARGRRALQDCMTAIRHHLPVAEAGAHL 209

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               +     R          PE L  ++ IA RCSF L       P  +     D     
Sbjct: 210  F-ANGERHLRRLEELGELYPPELLAQSLRIAERCSFDLDELEYHYPHELVPAGHD----P 264

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR     G   R  +G  A        R +++ EL +IA +++  YFL V D +++A
Sbjct: 265  TSWLRVLVERGAAERWREGVPAAA------RTQIEHELALIAELEYESYFLTVHDIVRFA 318

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++ +I    GRGS A S   +AL IT++DP    LLFERFL+ +R   PD D+DF  +RR
Sbjct: 319  REQHIL-CQGRGSAANSSVCFALGITELDPTESRLLFERFLSRERNEPPDIDVDFEHERR 377

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+YV  +YG  R A      +     A+RDV +AL +P  QV+ L        + P 
Sbjct: 378  EEVIQYVFRRYGRTRAALTAVVNTYHGAGAIRDVAKALGLPPDQVNALADCCGRWSSGPP 437

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            + + + +          +P + R+L ++ +L G  RH S H  G VI +  L  LVP+  
Sbjct: 438  TPERLLE----AGFDPQNPLLRRVLILTGELIGFPRHLSQHPGGFVISEHALDTLVPVEN 493

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
               ++  V Q++   +++ GL+K D L L  L+ L++    + + RG +  L+ +P +D 
Sbjct: 494  ATMTERTVIQWDKDDLDRVGLLKVDVLALGMLSALRRCFGLIERYRGTQWTLATLPKEDP 553

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY +++   T+G FQ+ES      L  ++P+   D++  V++ RPGPI   +V+    R
Sbjct: 554  ATYAMISRADTIGAFQIESRAQMAMLPRLRPNTFYDLVIQVAIVRPGPIQGDMVHPYLRR 613

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +N +E I      + P+ + T GV ++QEQVM++A + + Y+  EAD LRR+M    +  
Sbjct: 614  RNEEEAIDYPSDELKPVFERTLGVPLFQEQVMELAIVAAEYTPGEADELRRSMAAWKRHG 673

Query: 725  M-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
              +  ++R  S   + G ++     IF  +  F  YGF +SHAA++A+++Y + W+K H 
Sbjct: 674  GLEPHRQRLTSRMLEKGYTQEFTERIFRQIEGFGSYGFPESHAASFALLAYASCWLKCHE 733

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYYS 838
            P  +  A +           +  QDAR+ ++++ P  V     D  +  N      I   
Sbjct: 734  PAAYACALVNSWPMGFYSPDQVLQDARRHDVEVRPVDVRYSDWDCSLEPNEHGEPAIRLG 793

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L  I+G+    AR I +A     F  +ED   R    +L+    E L  AGAL      R
Sbjct: 794  LRMIRGMREDDARRIEQARQSGSFRDVEDLSVRA---RLDASARERLADAGALAGLAGHR 850

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             Q   ++  +++               +FA         ++L      +       +   
Sbjct: 851  HQARWAVAGVEE------------QLPLFAGVSAPNEASLSLP---APSQGEDLLTDYAT 895

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG     HPL + + +LR    +   E  A   G  + +A +V+ +Q+ +T  G  + +V
Sbjct: 896  LGTTLGPHPLALLRQVLRARRCRSSHELQAVEHGRPVSVAGLVIGRQRPQTASG--VIFV 953

Query: 1019 TFSEPAKEYEANFF 1032
            T  +         +
Sbjct: 954  TLEDEFGLVNVVVW 967


>gi|28869981|ref|NP_792600.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. tomato
            str. DC3000]
 gi|71151834|sp|Q881T7|DNAE2_PSESM RecName: Full=Error-prone DNA polymerase
 gi|28853226|gb|AAO56295.1| DNA polymerase III, alpha subunit, putative [Pseudomonas syringae pv.
            tomato str. DC3000]
          Length = 1031

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 264/1037 (25%), Positives = 447/1037 (43%), Gaps = 80/1037 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   + D+       A+AITD   L   +   Q +   G+  I
Sbjct: 5    YAELHCLSNFSFQRGASSARELFDRALRHGYAALAITDECTLAGIVRAWQASKDTGLPLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++                  P IVLLV    GYQ L  L++      + K   R
Sbjct: 65   VGSEMHLENG----------------PKIVLLVENLTGYQALCTLITVARRRAK-KGEYR 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L     +    L +      G         +           ++ F +RL++ ++ HR
Sbjct: 108  LLLEDFDHLPGGLLAIWLADIEGDAQACLAQGN---------WLRERFAERLWLGVELHR 158

Query: 191  G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQKDRPRV 248
            G  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V         
Sbjct: 159  GADDEQRLADLLALAQSLAIPAVASGDVHMHARGRRALQDTITAIRHHTTVAEAGHLLFA 218

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + +L++   +   + D   A   ++ IARRC+F         P  +  +     +   
Sbjct: 219  NGERHLRSLDALAEHYPDWLLA--ESLRIARRCTFTFDQLQYEYPHELVPKG----QTST 272

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR     G+  R  +G           R +++ EL +I   KF  YFL V D +++A+
Sbjct: 273  SWLRELTERGIRRRWPRGLSVAA------RAQVEKELALITEKKFDSYFLTVHDIVEFAR 326

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              +I    GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  DRR+
Sbjct: 327  SQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERDEPPDIDVDFEHDRRE 385

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  +YG  R A      +     ALRDV + L +P  Q++ L            S
Sbjct: 386  EVIQYIFRRYGRGRAALTAVASTYHGSGALRDVAKVLGLPPDQINALADAFSRWSDSLPS 445

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             + + +           P + R+L ++ +L G  RH S H  G VI + PL  LVP+   
Sbjct: 446  PERLREY----GFDAETPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLDTLVPVENA 501

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607
              ++  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +P DD  
Sbjct: 502  AMAERTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKQWTLASLPGDDRP 561

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665
            TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V+    R+
Sbjct: 562  TYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLRRR 621

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N +E I    P +  + + T GV ++QEQVM++A + + Y+  EAD LRRAM    +   
Sbjct: 622  NKEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEADQLRRAMAAWKRHGG 680

Query: 726  -DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
             D  +ER  +G   NG     A  IFE +  F  YGF +SHAA++A+++Y + W+K H P
Sbjct: 681  LDPHRERLRTGMLANGYDADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEP 740

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------DNRI 835
              F  A +           +  QDAR+ +I+I P  V     D  +          +  I
Sbjct: 741  AAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSHWDCTLEPLDHPDSTRNLAI 800

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L  ++      A  I  A + +PF    D   R     L+ R  E+L  +GAL    
Sbjct: 801  RLGLRMLRSFREEDALRIEAARSKRPFADATDLAQRA---GLDSRAAEALADSGALRGLI 857

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R +    +  +                 +F                 +   +     +
Sbjct: 858  GHRHRARWEVAGV------------EAQRPLFDDVTSEEVQ----VTLPLPTVAEDLVAD 901

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
               LG     HPL + +  L     +  ++ ++      + +A +V+ +Q+  T  G  +
Sbjct: 902  YATLGTTLGPHPLALLRRQLAAKRFRSSQDLLSLENNRTLSVAGLVIGRQRPGTASG--V 959

Query: 1016 GWVTFSEPAKEYEANFF 1032
             +VT  +         +
Sbjct: 960  TFVTLEDEFGMVNVVVW 976


>gi|330985361|gb|EGH83464.1| error-prone DNA polymerase [Pseudomonas syringae pv. lachrymans str.
            M301315]
          Length = 1031

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 265/1043 (25%), Positives = 453/1043 (43%), Gaps = 82/1043 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     +  L   S++S   GA S   + ++ +     A+AITD   L   +   Q + +
Sbjct: 1    MTSE--YAELHCLSNFSFQRGASSARELFERASRHGYQALAITDECTLAGIVRAWQASIS 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+  IIG ++ I+                  P  VLLV +  GY+ L +L++       
Sbjct: 59   TGLPLIIGSEMHIENG----------------PKAVLLVESQTGYEALCKLITVARRR-A 101

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K   R+      E   +GL+ +                +Q         ++ F +RL++
Sbjct: 102  RKGEYRLLREDF-EPSPDGLLAIWLPD--------IEGDAQACLAHGRWLRERFAERLWL 152

Query: 185  NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQ 242
             ++ HRG  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V   
Sbjct: 153  GVELHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEA 212

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                    + +L+    +   + D   A   +V IARRC+F L+      P  +  +   
Sbjct: 213  GHLLFANGERHLRPLDALAEHYPDWLLA--ESVRIARRCTFDLKQLKYEYPHELVPKG-- 268

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +   + LR     G   R   G           R +++ EL +I   KF  YFL V D
Sbjct: 269  --QTPTSWLRELTERGARKRWPNGL------TPATRAQVEKELALITEKKFDSYFLTVHD 320

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+  +I    GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF
Sbjct: 321  IVEFARSQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERNEPPDIDVDF 379

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              DRR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L       
Sbjct: 380  EHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGAVRDVAKVLGLPPDQINALADAFSRW 439

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                 S + + +           P + R+L ++ +L G  RH S H  G VI + PL  L
Sbjct: 440  SDSLPSPERLREY----GFDADMPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETL 495

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601
            VP+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +
Sbjct: 496  VPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKRWTLADL 555

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD +TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V+
Sbjct: 556  PGDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVH 615

Query: 662  N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                R+N +E I    P +  + + T GV ++QEQVM++A + + Y+  EAD LRRAM  
Sbjct: 616  PYLRRRNKEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEADELRRAMAA 674

Query: 720  KIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
              +    +  +ER  +G   N      A  IFE +  F  YGF +SHAA++A+++Y + W
Sbjct: 675  WKRHGGLEPHRERLRTGMLNNDYDVDFADRIFEQIKGFGSYGFPESHAASFALLTYASCW 734

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831
            +K H P  F  A +           +  QDAR+ +I+I P  V     D  +        
Sbjct: 735  LKCHEPAAFTCALINSWPMGFYNPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDS 794

Query: 832  --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              +  I   L  ++G     AR I  A + + F    D   R     L+ R  E+L  +G
Sbjct: 795  TRNLAIRLGLRMVRGFREDDARRIETARSKRLFSDATDLTLRA---GLDARAAEALADSG 851

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            AL      R +    +  +                 +F       +         +   +
Sbjct: 852  ALRGLIGHRHRARWEVAGV------------EAQRPLFNDLPSEDTQ----VTLPLPTVA 895

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 +   LG     HPL + +  L     +  ++ ++      + +A +V+ +Q+  T
Sbjct: 896  EDLMADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLSLENDRTLSVAGLVIGRQRPGT 955

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
              G  + +VT  +         +
Sbjct: 956  ASG--VTFVTLEDEFGMVNVVVW 976


>gi|239946850|ref|ZP_04698603.1| DNA polymerase III, alpha subunit family [Rickettsia endosymbiont of
            Ixodes scapularis]
 gi|239921126|gb|EER21150.1| DNA polymerase III, alpha subunit family [Rickettsia endosymbiont of
            Ixodes scapularis]
          Length = 1245

 Score =  597 bits (1540), Expect = e-168,   Method: Composition-based stats.
 Identities = 407/1133 (35%), Positives = 603/1133 (53%), Gaps = 119/1133 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F+HL+  SSYS LE AL++  +++  ++++  AI + D  NLF +LEF+  A   G+Q
Sbjct: 3    PEFIHLRTQSSYSFLESALTIEKVVELASSNKMSAICLADKGNLFGSLEFALYAVKKGLQ 62

Query: 69   PIIGCQLDIDM----------QDNLKMTNQGKT--------------------PFPTVPS 98
            PI G  L+I            QD  K     +T                           
Sbjct: 63   PIHGVILNIKYNIQHHSASFRQDEFKSKPAERTKVREQRLDSKNSLVSSLLNDAGDIFAQ 122

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            I+L+     GY+ L++L S  +  +  K    I    L E   EGLI L   + G + + 
Sbjct: 123  ILLIAKDETGYKNLLKLSSLTFTKNDRKICDHIDFEDLIEY-QEGLIALCCYTDGIVGKC 181

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNS 217
                + + A       +++ GDR Y  + RH   +    E   +++A    +PLVATN  
Sbjct: 182  LLARNEEQAMLFARKLQEILGDRFYFEIMRHDLPEEQFIEDSYIRIAAELAIPLVATNKV 241

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            LF  +  ++AHDVL+ ++        DR  V+ + Y ++  EM+ +FSDLP A++NTV +
Sbjct: 242  LFSEKSMHDAHDVLLCISAGVTKEYPDRKTVSENCYFRSPHEMIELFSDLPSAIQNTVNL 301

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG-------LEVRLAQGAIAK 330
              RC       A      +          E + +R  A  G                  +
Sbjct: 302  RERCY-----FAAHANPPMLPNFATKDISETDLIRKDAKEGLLARLATKFKSENISLENQ 356

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                 +Y  RL++EL++I  M F+GYFLIV+DFI+W+KK  I VGPGRGSGAGSV A++L
Sbjct: 357  EELKTEYFARLNYELDIICNMNFAGYFLIVSDFIKWSKKEGILVGPGRGSGAGSVVAWSL 416

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             ITD+DP++F LLFERFLNP+R+SMPDFDIDFCQ+RR+EVI YV++KYG  RV QIITFG
Sbjct: 417  LITDLDPIKFGLLFERFLNPERISMPDFDIDFCQERREEVINYVRSKYGDNRVGQIITFG 476

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQAIADDSRFREARLAD---- 505
             +QAKA ++DV R L +PY   D L +L+P    +PVS  QAI +      A   +    
Sbjct: 477  KMQAKAVIKDVARVLSLPYKFADYLTELVPFSAVNPVSLEQAIREVPELANAAKGNGLYN 536

Query: 506  -----PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
                   +  +L+ S  LEGL+RH+STHAAGIVI    L  +VP+Y+D  SD+ V  ++M
Sbjct: 537  LEGEAELIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDLVDIVPVYKDANSDMLVVGYSM 596

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
            K+ E AGLIKFDFLGL+TLT++      L ++G++VD + + FDD++TY +L     +G+
Sbjct: 597  KYSEIAGLIKFDFLGLQTLTVITDCKKLLKEQGIEVDFNNMTFDDNKTYQMLCKGKGVGV 656

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
            FQ ES GM+ AL  ++PD I D+IAL +LYRPGP++NI  Y   K+  ++   +H L+ P
Sbjct: 657  FQFESIGMKDALRRLKPDSIHDLIALGALYRPGPMENIPTYIACKHKLQQPDYLHELLKP 716

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            +L+ET GV+IYQEQV +IAQ+L+GY+L  AD+LRRAMGKKIK+EM++Q+E F+ GA  N 
Sbjct: 717  ILEETYGVVIYQEQVQRIAQVLAGYTLGAADLLRRAMGKKIKKEMEEQEEIFVKGAIANN 776

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            IS++ A +IF  +AKFA YGFNK+HAAAY VISYQTA++K +YP EFL A + LE++N +
Sbjct: 777  ISESQAKSIFATVAKFAGYGFNKAHAAAYGVISYQTAYLKANYPAEFLVACLNLELNNHD 836

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRI----------------------- 835
            KI  F Q+A+   I+I+ P++N     F V   D  I                       
Sbjct: 837  KINLFLQEAKDNGIKIIAPNINISEGYFSVKSSDTVIPRAATCHPQGSLCHPRESGDPEK 896

Query: 836  --------------YYSLAAIKGVGTTTAR-HIM-------------------EASADKP 861
                           +    I+G+G       I+                   E  A   
Sbjct: 897  LETALNHKSMKMDSRFRGNDIEGIGYDKEENAIIFALGAIKGVTPNFGKLVTDERKARGM 956

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F S+ DF  R+  K +N ++LE+L+ +G  D    +R+QL  S+  +  Y+    + + +
Sbjct: 957  FKSITDFIERLPPKSINSKLLENLIKSGCFDELHDNRLQLFSSISKLLSYSTSYHEEQGS 1016

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
               ++    K +      L      + +     E   +G + S HPL  Y+ I  ++ I 
Sbjct: 1017 NQFSL---IKVSTLSPTILVSSDYADKNTLAFYEFEAMGLFISNHPLMQYQEIFSRLNIL 1073

Query: 982  GYEESV-ATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +       G   + LA ++  K  + + +G R   +  S+P   +E + F
Sbjct: 1074 NTADLQNNLPEGTNRVNLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSIF 1125


>gi|331008498|gb|EGH88554.1| error-prone DNA polymerase [Pseudomonas syringae pv. tabaci ATCC
            11528]
          Length = 1031

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 267/1043 (25%), Positives = 454/1043 (43%), Gaps = 82/1043 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     +  L   S++S   GA S   + ++       A+AITD   L   +   Q + +
Sbjct: 1    MTSE--YAELHCLSNFSFQRGASSARELFERALRHGYQALAITDECTLAGIVRAWQASIS 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+  IIG ++ I+                  P  VLLV +  GY+ L +L++       
Sbjct: 59   TGLPLIIGSEMHIENG----------------PKAVLLVESQTGYEALCKLITVARRR-A 101

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K   R+      E   +GL+ +                +Q         ++ F +RL++
Sbjct: 102  RKGEYRLLREDF-EPSPDGLLAIWLPE--------IEGDAQACLAHGRWLRERFAERLWL 152

Query: 185  NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQ 242
             ++ HRG  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V   
Sbjct: 153  GVELHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEA 212

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                    + +L+    +   + D   A   +V IARRC+F L+      P  +  +   
Sbjct: 213  GHLLFANGERHLRPLDALAEHYPDWLLA--ESVRIARRCTFDLKQLKYEYPHELVPKG-- 268

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +   + LR     G   R   G           R +++ EL +I   KF  YFL V D
Sbjct: 269  --QTPTSWLRELTERGARKRWPNGL------TPATRAQVEKELALITEKKFDSYFLTVHD 320

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+  +I    GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF
Sbjct: 321  IVEFARSQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERNEPPDIDVDF 379

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              DRR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L       
Sbjct: 380  EHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGAVRDVAKVLGLPPDQINALADAFSRW 439

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                   + + +           P + R+L ++ +L G  RH S H  G VI + PL  L
Sbjct: 440  SDSLPPPERLREY----GFDADMPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETL 495

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601
            VP+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +
Sbjct: 496  VPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKRWTLADL 555

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD +TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V+
Sbjct: 556  PGDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVH 615

Query: 662  N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                R+N +E I    P +  + + T GV ++QEQVM++A + +GY+  EAD LRRAM  
Sbjct: 616  PYLRRRNKEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAAGYTPGEADELRRAMAA 674

Query: 720  KIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
              +    +  +ER  +G  KNG     A  IFE +  F  YGF +SHAA++A+++Y + W
Sbjct: 675  WKRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCW 734

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831
            +K H P  F  A +           +  QDAR+ +I+I P  V     D  +        
Sbjct: 735  LKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDS 794

Query: 832  --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              +  I   L  ++G     AR I  A + + F    D   R     L+ R  E+L  +G
Sbjct: 795  TRNLAIRLGLRMVRGFREDDARRIETARSKRLFSDATDLSLRA---GLDARAAEALADSG 851

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            AL      R +    +  +                 +F       +         +   +
Sbjct: 852  ALRGLIGHRHRARWEVAGV------------EAQRPLFNDLPSEDTQ----VTLPLPTVA 895

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 +   LG     HPL + +  L     +  ++ ++      + +A +V+ +Q+  T
Sbjct: 896  EDLMADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLSLENDRTLSVAGLVIGRQRPGT 955

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
              G  + +VT  +         +
Sbjct: 956  ASG--VTFVTLEDEFGMVNVVVW 976


>gi|88705720|ref|ZP_01103430.1| DNA polymerase III, alpha subunit [Congregibacter litoralis KT71]
 gi|88700233|gb|EAQ97342.1| DNA polymerase III, alpha subunit [Congregibacter litoralis KT71]
          Length = 1036

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 281/1037 (27%), Positives = 449/1037 (43%), Gaps = 71/1037 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S YS L GA     ++ + AA     IAITD  +L   ++    A   G+  I
Sbjct: 3    YCELHCLSCYSFLRGASRPEELVAQAAAKGYSGIAITDECSLAGVVKAHVAAKEHGLSLI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +                     ++ L  T   Y  L  L+S        K    
Sbjct: 63   IGSEFTLT----------------EGIRLLALAPTRAAYGELSGLISLARRRS-PKGEYE 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L  +       LI+                 S           +L  +R+++ +    
Sbjct: 106  VTLRDVIFHLKRCLIV-----------WLPREDSDANRGYGRQLARLCRERVWIGVHYLL 154

Query: 191  GYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
            G D  R  + +Q LA   +LPLVA  +           HDV+ A+ H+  V+   R R+ 
Sbjct: 155  GNDELRRYRALQTLATHLQLPLVACGDVRMHCATRKPLHDVMTALHHNCSVAALGRRRLP 214

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                   RS          E L  T+ I RRC F L       P+ +  +         +
Sbjct: 215  NA-QQHLRSVKQLERFYPNELLTETLNILRRCHFSLDELRYEYPKEVVPDG----HNARD 269

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR     G   R   G           R+R++ EL +IA + +  YFL V D +++A+ 
Sbjct: 270  YLRELTWQGASQRWPDG------TPTAIRERIEKELALIAELDYEYYFLTVYDIVRFARG 323

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A SV  Y L IT++ P + SLLFERF++ +R   PD D+DF  +RR+E
Sbjct: 324  RGIL-CQGRGSAANSVVCYCLLITEVSPEKVSLLFERFISRERDEPPDIDVDFEHERREE 382

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+  KY   R A   T  + +A++A+RDVG+AL +    VD L K +          
Sbjct: 383  VIQYIYEKYSRRRAALAATVITYRARSAVRDVGKALGLDPLFVDDLAKSLAWWDKQRDLE 442

Query: 490  QAIADDSRFREARLADPSVDRLLEI-SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
               ++     +    +P++ RL     Q++ G  RH S H  G VI   P+SQLVP+   
Sbjct: 443  ARFSEHGLQTDNDDGEPNIARLFYQLVQEILGFPRHLSQHVGGFVISRGPISQLVPVENA 502

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-LSLIPFDDHE 607
              +D  V Q++   IE  GL+K D L L  L+ ++KSL  + +   ++  L  IP +D  
Sbjct: 503  SMADRTVIQWDKDDIEALGLLKVDVLALGMLSAIRKSLALVNRYDPRIRTLQDIPVEDVA 562

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665
            TY +L    ++G+FQ+ES      L  ++P C  D++  +++ RPGPI   +V+    R+
Sbjct: 563  TYRMLQKADSIGVFQIESRAQMSMLPRLKPACFYDLVIEIAIVRPGPIQGDMVHPYLRRR 622

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G E I      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRA+    +   
Sbjct: 623  QGLEDISYPDEAVKSVLERTLGVPIFQEQVIRLAMVAAGFSGGEADQLRRAITNWGRNSK 682

Query: 726  -DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
                +++   G  + G S+  A  +F+ +  F  YGF +SH+A++A+++Y ++W+K H+P
Sbjct: 683  LLTFEKKLTEGMLRRGYSEDYARRLFDQIKGFGGYGFPESHSASFALLAYVSSWLKCHHP 742

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-------IYY 837
              F    +  +        +  QDAR+ ++  +PP VN    D ++ D+        I  
Sbjct: 743  SAFYVGLLNSQPMGFYSPSQLIQDARRHDVVALPPDVNHSDWDHQLLDDGQQGTRAPIRL 802

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  IKG+    AR I  A  D P+  + D   R     LNR+ +E+LV A AL      
Sbjct: 803  GLRLIKGLSRDAARRISMARRDTPYRQIADLRKRA---ALNRKDMEALVDADALSSLSGH 859

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE-KFSVENSSVRFENEQ 956
            R Q    +  +                 + AHE  T     + E        +     + 
Sbjct: 860  RHQARWQVMAL------------EPERPLLAHEHYTAGPSPSDEISLPEPAVAESVIADY 907

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            R  G     HPL + +        K   +      G  +R+A +V  +Q+  T  G  + 
Sbjct: 908  RSTGVTLRAHPLALLRSETPFNQCKCQRDLELMDDGRFVRIAGLVTCRQRPGTASG--VL 965

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++T  +         +P
Sbjct: 966  FLTLEDETGNNNVVVWP 982


>gi|237733766|ref|ZP_04564247.1| DNA polymerase III dnaE [Mollicutes bacterium D7]
 gi|229383104|gb|EEO33195.1| DNA polymerase III dnaE [Coprobacillus sp. D7]
          Length = 977

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 353/1023 (34%), Positives = 548/1023 (53%), Gaps = 52/1023 (5%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQV+SSYS     + + +++ K +     A+A+TD +N++ A+E ++ A   GI+ + G
Sbjct: 4    HLQVYSSYSFQNSTILIEDLVKKASDLHYEALALTDKDNMYGAMELAKYAKKYGIKAVFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             +  +++   +               ++LL     GY  L+++ S + L ++G     I 
Sbjct: 64   LEASVEINHEI-------------YPLLLLARDVTGYFDLVKITSEICLSERG----AIS 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG- 191
            L  L     E L +++    G I+R         A K L  FK  F +  YV LQ H   
Sbjct: 107  LEALSLY-REHLFVISACKEGIIERLILKELDSEALKYLELFKNTF-NNFYVGLQNHGIA 164

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
              +    ++V LA    +P+  TN   +L++++    D+L A A        D       
Sbjct: 165  MQQKLNERLVALATLQNIPICVTNEVRYLNKDEAFTLDLLQASAKG---MMLDLEHQVQT 221

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
              L  +S          + +ENT +I R C+  +      LP++   +  D      + L
Sbjct: 222  DQLYLKSSFEMESLFDKKYIENTNDIIRLCNVTIPTDQMHLPKYPVPKDGDAG----DYL 277

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R   + GL+ R     I       +Y +RL  EL VI +M F+ YFLIV D++++AK + 
Sbjct: 278  RQLCLVGLKKRFKGKNI-----PNEYIERLKKELTVINKMGFNDYFLIVFDYVRYAKMHK 332

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I VGPGRGS AGS+ AY L IT +DPLR+ LLFERFLN +R+SMPD DIDF  DRRDEV+
Sbjct: 333  ILVGPGRGSAAGSLVAYVLGITGVDPLRYDLLFERFLNEERISMPDIDIDFQDDRRDEVV 392

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQ 490
             YV  KYGHE VAQI+TF +   K A++D+G+ L +P  +++ L K IP +  +  S  +
Sbjct: 393  NYVTEKYGHEHVAQIVTFSTYGPKVAIKDLGKVLGVPLPRLELLTKNIPTNYKNRKSARE 452

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   F+     DP++ +++     +E L R+ STHAAG+V+ +  L Q+VP+ R   
Sbjct: 453  VFETSYSFQSMVNKDPALRKIMPAVFIVEKLPRNISTHAAGVVLSNDVLDQVVPLVRGPN 512

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609
            +   VTQ++  +IE+ GL+K DFLGLK LT++   + D      V+++++ I   D +TY
Sbjct: 513  NG-VVTQYSKDYIEEVGLLKMDFLGLKNLTIIDYIIKDIAKNHQVEININDIDLQDKKTY 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             +++   T GIFQLESSGM+  L  MQ DC++D+IA ++L+RPGP+ NI  Y  RK GKE
Sbjct: 572  EMISRGDTFGIFQLESSGMKNLLVKMQCDCLDDVIAAIALFRPGPMANIPSYIARKKGKE 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I      + P+LK T G+++YQEQ+MQ AQL++G+SL++AD+LR+AM KK    M   K
Sbjct: 632  PITYPLECLKPILKSTYGILLYQEQIMQAAQLVAGFSLAKADILRKAMSKKTASLMKAMK 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G   NG S+  AV +FEL+ +FA+YGFNKSH+  Y  I+Y  A++K ++P+EF +
Sbjct: 692  SEFIQGGIANGFSELEAVKVFELIERFANYGFNKSHSVVYGYIAYWLAYLKANFPLEFFS 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++ E  +        Q+ +++ ++++ PS+N     FKV D  I YSL AIK VG   
Sbjct: 752  ALLSNEQSSDASKLSCIQEGKKYGVKLLAPSINYSTDRFKVEDGNIRYSLLAIKNVGYAG 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
             + I     +  F  + DF SR++S KLN ++L+SL+ AGA D F  +R  + Q+L  I 
Sbjct: 812  YKAIEAERQNGTFKDIFDFVSRMESSKLNSKMLDSLIMAGAFDEFKLNRTTIKQNLHKIM 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA+                      D+  +     +N     E E+ VLG Y + HP+ 
Sbjct: 872  EYAELKN---------------SIGIDEPPILTIVRDNRIKVLEEEKMVLGVYLTMHPIA 916

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            + K  L++  I    E    I    +R+   +   +    +KG  + +V   +   E +A
Sbjct: 917  LIKNNLKEQ-IVNLNELSNYID-QPVRVIMALSRVKVIVDKKGQEMCFVDGYDETGEVDA 974

Query: 1030 NFF 1032
              F
Sbjct: 975  VVF 977


>gi|296115453|ref|ZP_06834087.1| DNA polymerase III, alpha subunit [Gluconacetobacter hansenii ATCC
            23769]
 gi|295978026|gb|EFG84770.1| DNA polymerase III, alpha subunit [Gluconacetobacter hansenii ATCC
            23769]
          Length = 1058

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 281/1039 (27%), Positives = 465/1039 (44%), Gaps = 74/1039 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  LQV + +S L GA S   + ++  A    A++I D N+L   ++    A A G++
Sbjct: 6    PCYAELQVTTYFSFLRGASSPIELFEQAKALGIEALSICDRNSLAGMVQAYGAAKATGVR 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++GC++D+                   P++++  +    Y RL  L++       GK  
Sbjct: 66   LVVGCRIDLAD----------------FPAVLVYPTDRAAYGRLCRLLTIGKAR-AGKGK 108

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
              +    L   G EGLI++               +       L   K  F DR Y+ L  
Sbjct: 109  CHLLWEDLVAWG-EGLIIV----------MVPDTADDACALHLRKLKDAFADRAYMALTL 157

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D+ R  ++  LA    +P V TN+ LF + +     DV+  + H+T + +    R
Sbjct: 158  LRRPNDQMRLYELANLAQQAHVPTVVTNDVLFHTHDRRILQDVVTCIRHNTTIDEAGFVR 217

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                D YLK   EM  +FS  PEA+  TV+I  RC F L   A         E     + 
Sbjct: 218  ERHADRYLKPPQEMARLFSRYPEAVARTVQIVERCHFSLDDLAY----QYPDEVSVPGQT 273

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L             +G         + R+ L+ EL +I RM ++ YFL V   +++
Sbjct: 274  PQQALEALTWEAAARTYPEG------IPDEVRKSLNHELGLIGRMAYAPYFLTVNSIVRY 327

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I    GRGS A S   Y L IT IDP R SLLFERF++ +R   PD D+DF   R
Sbjct: 328  ARSQDIL-CQGRGSAANSAVCYVLGITAIDPARNSLLFERFVSEERGEPPDIDVDFEHAR 386

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R++VI++V   YG +R A        +AK ALRDVG+ + +P   +  L   I       
Sbjct: 387  REQVIQWVYEHYGRDRAALTAVVIRYRAKGALRDVGKVMGLPEDLIRTLSGQIHGW-GRT 445

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +   A+ D        L+D  +   L++++ L G  RH S H  G V+    L +LVP+ 
Sbjct: 446  LDDDALTDS----GIDLSDRRIRLTLDLARCLIGTPRHLSQHPGGFVLTHDRLDELVPIE 501

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                    + +++   I+    +K D L L  LT ++K LD LA+       L  +P +D
Sbjct: 502  PASMEARQIIEWDKDDIDVLKFMKVDILALGMLTCMKKGLDLLAEHKGQHFTLQTLPAED 561

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
              TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    
Sbjct: 562  PRTYAMIRKADTIGVFQIESRAQMSMLPRLKPRVFYDLVIEVAIVRPGPIQGDMVHPYLR 621

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IK 722
            R+ G E      P ++ +LK+T G+ ++QEQ MQ+A + +G++ +EAD LRRAM      
Sbjct: 622  RREGIEPEDYPTPELEKVLKKTLGIPLFQEQAMQVAMICAGFTAAEADQLRRAMATFKNT 681

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              + + + R I+G   NG  +  A  I+  L  F  YGF +SHAA++A+++Y ++WMK  
Sbjct: 682  GTVSQFQTRLINGMRANGYDEEFAERIYLQLEGFGSYGFPESHAASFAILAYSSSWMKCT 741

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-------RI 835
            +P  FLA+ +  +        +  +DAR+  ++I P  VN    D  +           +
Sbjct: 742  HPDVFLASLLNSQPMGFYAPAQLVRDAREHGVEIRPVCVNASRWDSTLEGPESPNGMFAV 801

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CF 894
               ++ +KG+    A  I+ A   +PF S++D   R   K      L  L  A A     
Sbjct: 802  RLGMSLVKGLANDDAARIVAARDSRPFTSIDDLWRRAGVKA---AALTHLAEADAFRPSL 858

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            G +R + L ++  ++                +FA  + T   +                 
Sbjct: 859  GLARREALWAIRVLRDE-----------PLPLFAAAQITREAEEPDVLLQPMRDGAEVVR 907

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +   LG     HPL   +  L++  I    +++A   G  + +A +V+ +Q+  + +G  
Sbjct: 908  DYNRLGLTLRDHPLTFLREDLQERDIMSCRQALAAKDGKRLTVAGLVLVRQRPGSAEG-- 965

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + ++T  +         +P
Sbjct: 966  VVFMTLEDETANMNVIIWP 984


>gi|330891559|gb|EGH24220.1| error-prone DNA polymerase [Pseudomonas syringae pv. mori str.
            301020]
          Length = 1031

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 265/1043 (25%), Positives = 454/1043 (43%), Gaps = 82/1043 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     +  L   S++S   GA S   + ++ +     A+AITD   L   +   Q + +
Sbjct: 1    MTSE--YAELHCLSNFSFQRGASSARELFERASRHGYQALAITDECTLAGIVRAWQASIS 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+  IIG ++ I+                  P  VLLV +  GY+ L +L++       
Sbjct: 59   TGLPLIIGSEMHIENG----------------PKAVLLVESQTGYEALCKLITVARRR-A 101

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K   R+      E  ++GL+ +                +Q         ++ F +RL++
Sbjct: 102  RKGEYRLLREDF-EPSSDGLLAIWLPD--------IEGDAQACLAHGRWLRERFAERLWL 152

Query: 185  NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQ 242
             ++ HRG  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V   
Sbjct: 153  GVELHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEA 212

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                    + +L+    +   + D   A   +V IARRC+F L+      P  +  +   
Sbjct: 213  GHLLFANGERHLRPLDALAEHYPDWLLA--ESVRIARRCTFDLKQLKYEYPHELVPKG-- 268

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +   + LR     G   R   G           R +++ EL +I   KF  YFL V D
Sbjct: 269  --QTPTSWLRELTERGARKRWPNGL------TPATRAQVEKELALITEKKFDSYFLTVHD 320

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+  +I    GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF
Sbjct: 321  IVEFARSQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERNEPPDIDVDF 379

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L       
Sbjct: 380  EHARREEVIQYIFRRYGRGRAALTAVASTYHGSGAVRDVAKVLGLPPDQINALADAFSRW 439

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                 S + + +           P + R+L ++ +L G  RH S H  G VI + PL  L
Sbjct: 440  SDSLPSPERLREY----GFDADMPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETL 495

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601
            VP+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +
Sbjct: 496  VPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKRWTLADL 555

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD +TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V+
Sbjct: 556  PGDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVH 615

Query: 662  N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                R+N +E I    P +  + + T GV ++QEQVM++A + +GY+  EAD LRRAM  
Sbjct: 616  PYLRRRNKEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAAGYTPGEADELRRAMAA 674

Query: 720  KIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
              +    +  +ER  +G   N      A  IFE +  F  YGF +SHAA++A+++Y + W
Sbjct: 675  WKRHGGLEPHRERLRTGMLNNDYDVDFADRIFEQIKGFGSYGFPESHAASFALLTYASCW 734

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831
            +K H P  F  A +           +  QDAR+ +I+I P  V     D  +        
Sbjct: 735  LKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDS 794

Query: 832  --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
              +  I   L  ++G     AR I  A + + F    D   R     L+ R  E+L  +G
Sbjct: 795  TRNLAIRLGLRMVRGFREDDARRIETARSKRLFSDATDLTLRA---GLDARAAEALADSG 851

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            AL      R +    +  +                 +F       +         +   +
Sbjct: 852  ALRGLIGHRHRARWEVAGV------------EAQRPLFNDLPSEDTQ----VTLPLPRVA 895

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 +   LG     HPL + +  L     +  ++ ++      + +A +V+ +Q+  T
Sbjct: 896  EDLMADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLSLENDRTLSVAGLVIGRQRPGT 955

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
              G  + +VT  +         +
Sbjct: 956  ASG--VTFVTLEDEFGMVNVVVW 976


>gi|225874743|ref|YP_002756202.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC
            51196]
 gi|225794171|gb|ACO34261.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC
            51196]
          Length = 1071

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 276/1048 (26%), Positives = 477/1048 (45%), Gaps = 48/1048 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     +V L   S++S L+ A     + D+ A    PA+A+ D N L+ A  F   A  
Sbjct: 1    MTD--RYVELHAASAFSFLQAASQPEKLTDRAAEIAMPALALLDHNGLYGAARFHTAAQR 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQ--GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              I+  IG ++ +       +               I LL  + EGYQ L +L++R  + 
Sbjct: 59   NNIRAHIGAEIAVSSFGPRWLPPAWLPHQCKSEPTRIPLLCESREGYQNLCQLITRFKMR 118

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181
            ++ K+S       L E  + GL+ LTGG  GP+  A          + +    ++FG   
Sbjct: 119  EETKESGAATFDDLSEYAS-GLVCLTGGDEGPLAAALSSGGEAAGREAVEELTRIFGRGS 177

Query: 182  LYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TV 239
            +YV LQRH    + +R    +++A +  LP++ATN     +  + E  D+  A+ +   +
Sbjct: 178  VYVELQRHQDREEEWRNQAALRIARSLNLPVIATNGVRHATPYEREVLDLFTAIRNHIEL 237

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                         +L+  SEM ++F D+P A+ENT+ ++ R  F L       PR+   +
Sbjct: 238  DQAGRLLATNSQRHLRTASEMTALFRDIPGAVENTLVLSSRLGFQLHDLGYEFPRYPVPD 297

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             D      ++ LR +   G+  R A          +  +++++ EL +IA++ F+GYFLI
Sbjct: 298  GD----TMDSFLRKRVEEGVLRRYAPKNDRGLM--ERAKKQVEHELTLIAKLGFAGYFLI 351

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D I++ ++++I V  GRGS A SV  Y L IT +DP+   LLFERFL+  R   PD D
Sbjct: 352  VWDIIRFCQQHDILV-QGRGSAANSVVCYCLEITAVDPVGMDLLFERFLSESRNEWPDID 410

Query: 420  IDFCQ-DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            +D    ++R++ I+YV  +YG    A      + + K+A R+ G+AL      + RL  L
Sbjct: 411  LDLPSEEKREQAIQYVYRRYGELGTAMCANVITYREKSAARETGKALGFDEETLGRLSSL 470

Query: 479  --IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
                    +  ++      + F            L   S +++ L RH   H+ G+VI  
Sbjct: 471  AGQWEWRGNTDTMAHTFHHAGFDIRHARIAKYIEL---SMRIQDLPRHLGQHSGGMVICQ 527

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
              L+++VP+ R   ++  V Q++ +     G+IK D LGL  + +L   L+ + +     
Sbjct: 528  GHLNKVVPLERASMANRHVVQWDKEDCADLGIIKVDLLGLGMMAVLHDCLELIPRHYGNK 587

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI- 655
                    D E Y ++    T+G+FQ+ES     +L    P    D++  V++ RPGPI 
Sbjct: 588  VDLAQLPQDDEVYRVVQRADTVGMFQIESRAQMASLPRNCPRKFYDLVVQVAIIRPGPIV 647

Query: 656  -DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
               +  Y  R+ GKE +   HP + P+L+ T GV ++QEQ+++IA  ++ +S +EAD LR
Sbjct: 648  GQMMHPYMRRRQGKEAVTYPHPSLVPVLERTLGVPLFQEQLLRIAMTVADFSGAEADELR 707

Query: 715  RAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RA+  ++  E M   +    +G ++NGI +     I + ++ FA YGF +SHAA++A+I+
Sbjct: 708  RAVGMRRSWERMKNLEGNLRAGMTRNGIDERTQDTIVQQISSFALYGFPESHAASFALIA 767

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-- 831
            Y +A++K  Y   F AA +  +           +DA++  +++ P  V        V   
Sbjct: 768  YASAYLKVKYLAAFTAAILNNQPMGFYSPAVLVKDAQRHGLRVKPIDVQVSEWRCTVEHE 827

Query: 832  ---DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                  +   L   + +   +A  ++ +   D PF S+ED   RV    LNR+ L+ L  
Sbjct: 828  SDGGLALRIGLGYARQLKRESAEALVRSRLQDGPFRSVEDVAQRVPF--LNRKELKRLAE 885

Query: 888  AGALDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
             GAL+       R   L  ++   K               + A+ +    D         
Sbjct: 886  IGALNQLQGIEHRRDALWQIERAGKL-----------EGPLLANAESLREDSEARP-LQQ 933

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             N   R   +    G     HP+   +  LR+  I   ++      G  +R+A  ++++Q
Sbjct: 934  MNVEERLVADYAGTGLTVGRHPMHYRRAELRRANILSAQDLRQRRDGEYVRVAGCIIARQ 993

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  T KG    +++  +          P
Sbjct: 994  RPGTAKG--FIFISMEDETGICNVIVTP 1019


>gi|227535154|ref|ZP_03965203.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei
            ATCC 25302]
 gi|227187199|gb|EEI67266.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei
            ATCC 25302]
          Length = 1098

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 324/1028 (31%), Positives = 516/1028 (50%), Gaps = 59/1028 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQVHS+Y+LL   L+L++++    +    AIA+TDTN ++  +EF ++A AAG++P
Sbjct: 2    TFTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q+ ID                    ++++    +GY +L+++ +++ L      S 
Sbjct: 62   LLGMQIAIDDA-----------------KLLVIAKNNQGYHQLLKISTQIMLAT----SP 100

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
                  L      GL+ +T     P   A   N    A   L        + +YV L   
Sbjct: 101  VAFADLL---PLTGLVAIT-LPDSPFSAAVAANDHDRAVAFLQELDNKQPEAVYVGL--- 153

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               + + ++ +   A + +L L+A  N L+    D     V+ A+   + ++ +D     
Sbjct: 154  --DEAHLDTPLPAFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRDPVLTD 211

Query: 250  PDHYLKNRSEMVS---IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               +        S   + + L  A++N  +IA +    +    P LP +   +    Q  
Sbjct: 212  AGPWWLKPPADASAPFVAAGLQAAVDNAAQIADQTDVTITFKQPQLPHYQTPD----QLA 267

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++ L   A  GL  R     I        Y+QRL +EL+VI +M F+ YFL+V D + +
Sbjct: 268  SKDYLTKLAQEGLANRFHDQPI-----PTTYQQRLQYELDVIIKMGFADYFLVVWDVMNY 322

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A K NI  G GRGS AGS+ +YAL IT++DP+ + LLFERFLNP R  MPD D+D   +R
Sbjct: 323  AHKVNIMTGAGRGSAAGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLDIPDNR 382

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R E+I+YV +KYG   +AQIITFG+  AK A+RDV R   M   + +   + IPN     
Sbjct: 383  RGELIQYVHDKYGRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPNLLHMD 442

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +           +      P    L + +  LEGL RH STHAAGIV+ + PL+  V + 
Sbjct: 443  LKTAYDQSQP-LKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQ 501

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                  L  TQ     +E  GL+K DFLGLK L +L  +  F+ +  G   D   IP +D
Sbjct: 502  -PSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRTFDPKQIPLND 560

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G++  L  ++P   ED++A+ +LYRPGP++NI  +  RK
Sbjct: 561  QPTLALFARGDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMENIDTFIARK 620

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+E I    P ++ +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM KK    +
Sbjct: 621  NGQEPIAYPDPALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSKKKSSVL 680

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
              ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+++++  A++K H P 
Sbjct: 681  AAEQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYLKVHDPA 740

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F AA M   M+N+ K++ + Q+A+   + ++ P +NT    FK+ D +I + L ++KG+
Sbjct: 741  AFFAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLSDGKIRFGLLSVKGM 800

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                +  I  A  + PF    D   R++ K L     + L+ AGA D F  +R Q + +L
Sbjct: 801  RRDFSEAIFTARKNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRAQTIANL 860

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D +    +            +F+                   +  R E E  VLG Y SG
Sbjct: 861  DELINSVKL-----AGNDVGLFSVL------APKPIVVPEMPAGERLEEEANVLGVYLSG 909

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+D Y P+  +  +    +      G  + +  +V   ++ +T+ G  + +V   +   
Sbjct: 910  HPVDKYAPLKTQYTLVNVVDLAE---GRTVDILLLVRHIKRIRTKTGKPMAFVDGQDATG 966

Query: 1026 EYEANFFP 1033
                  FP
Sbjct: 967  TVSLTVFP 974


>gi|111221614|ref|YP_712408.1| error-prone DNA polymerase [Frankia alni ACN14a]
 gi|111149146|emb|CAJ60829.1| putative DNA polymerase III (ALPHA CHAIN) DNAE2 (DNA
            NUCLEOTIDYLTRANSFERASE) [Frankia alni ACN14a]
          Length = 1106

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 291/1033 (28%), Positives = 479/1033 (46%), Gaps = 44/1033 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS++S L+GA    +++++       A+A+TD + L+  + F++ A   G++ +
Sbjct: 57   YAELHCHSAFSFLDGASQPEDLVEEAVRLGLSALALTDHDGLYGVVRFAEAAREVGLRTV 116

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G ++ +          +     P    +++L    EGY+RL  L+S  +L    K  + 
Sbjct: 117  FGAEISL-----GARAARAGETDPDGDHLLVLARDPEGYRRLARLLSDAHLAGGEKGRLV 171

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                           +LTG   G + RA   +    A   L    +LFG + + V L  H
Sbjct: 172  AEPEACARAAGGHWQVLTGCRKGTVPRALARSGPAAAGAALAELAELFGRENVAVELADH 231

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLF-LSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                D  R   + +LA T  LPLVAT N  +        A  +    A  ++        
Sbjct: 232  AHPLDSARNDALAELARTARLPLVATGNVHYAAPGAARLAAAMAAVRARRSLAEMDGWLP 291

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 +L++ +EM   F+  P A+E    I   C+F L + AP LP F           E
Sbjct: 292  AAGTAHLRSGAEMAQRFARFPTAVEQAARIGAECAFDLHLVAPRLPDFPVPPG----HTE 347

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR   + G   R      A          +L  EL +I ++ F GYFLIV D +++ 
Sbjct: 348  ASWLRLLTMQGAARRY---GPAGQERIAGAYDQLAHELGLIEQLGFPGYFLIVHDIVEFC 404

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +++ I    GRGS A S   YAL IT +D + F LLFERFL P+R   PD D+D    RR
Sbjct: 405  RRHRIL-CQGRGSAANSAVCYALGITGVDAVSFGLLFERFLAPERDGPPDIDLDIESGRR 463

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+YV  +YG +R AQ+    + + ++A+RDV RAL     Q D   + +        
Sbjct: 464  EEVIQYVYRRYGRDRAAQVANVITYRPRSAVRDVARALGFSAGQQDAWSRQLDRW----- 518

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            SL A                   + +++ +L G  RH   H+ G+VI DRP+ ++VP+  
Sbjct: 519  SLPAAGPPPSGDGGGPEHDIPPEVTQLADRLLGFPRHLGIHSGGMVICDRPVGEVVPVEW 578

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
                   V Q++      AGL+KFD LGL  L++L K+ D +    G  +DLSLIP +D 
Sbjct: 579  ARMPGRTVIQWDKDDCAAAGLVKFDLLGLGMLSMLHKAFDLIRGHHGRDLDLSLIPPEDP 638

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664
              Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y  R
Sbjct: 639  AVYDMLCAADSIGVFQVESRAQMATLPRLRPRRFYDLVVEVALIRPGPIQGGSVHPYIRR 698

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723
            +NG E++   HPL+   L +T GV ++QEQ+MQ+A  ++G+S +EAD LRRAM  K+  +
Sbjct: 699  RNGAEEVTYPHPLLRRSLAKTLGVPLFQEQLMQMAIDIAGFSAAEADELRRAMGSKRSAD 758

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +++ +ER  +G + +GI+  +A ++F  L+ FA++GF +SH+ ++A + Y ++W+K +Y
Sbjct: 759  RIERLRERLYTGMAASGITGALADDLFTKLSAFANFGFPESHSVSFAFLVYASSWIKLYY 818

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD--NRIYYSLAA 841
            P  F AA +  +       +    DAR+  ++++ P VN   V   +     R+   L+ 
Sbjct: 819  PAAFCAALLNAQPMGFYSPQSLVADARRHGVEVLRPDVNASAVGASLVGAQPRVRLGLSG 878

Query: 842  IKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            ++ VG + AR I+E   A  P+  + D   RV    L+   +E+L  AGA  CFG +R +
Sbjct: 879  VRRVGESLARRIVETRVAGGPYAGMADLVRRV---GLSVDQVEALATAGAFACFGVARRE 935

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             L +   +         +R +     F  +    +                   +    G
Sbjct: 936  ALWAAGAV----AQARPDRLDGMV--FGADVAAVA-----PYLPGMTGVEESVADLWATG 984

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
                G+P    +  L   G+           G  + +A +V  +Q+  T  G+   +V  
Sbjct: 985  ITTEGYPTRFLRERLAAQGVTAAAGLRDAEAGRRVLVAGIVTHRQRPATAGGT--TFVNL 1042

Query: 1021 SEPAKEYEANFFP 1033
             +          P
Sbjct: 1043 EDETGLVNVICSP 1055


>gi|301066411|ref|YP_003788434.1| DNA polymerase III subunit alpha [Lactobacillus casei str. Zhang]
 gi|300438818|gb|ADK18584.1| DNA polymerase III, alpha subunit [Lactobacillus casei str. Zhang]
          Length = 1098

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 325/1028 (31%), Positives = 517/1028 (50%), Gaps = 59/1028 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQVHS+Y+LL   L+L++++    +    AIA+TDTN ++  +EF ++A AAG++P
Sbjct: 2    TFTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q+ ID                    ++++    +GY +L+++ +++ L      S 
Sbjct: 62   LLGMQIAIDDA-----------------KLLVIAKNNQGYHQLLKISTQIMLAT----SP 100

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
                  L      GL+ +T     P   A   N    A   L        + +YV L   
Sbjct: 101  VAFADLL---PLTGLVAIT-LPDSPFSAAVVANDHDRAVAFLQELDNKQPEAVYVGL--- 153

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               + + ++ +   A + +L L+A  N L+    D     V+ A+   + ++ +D     
Sbjct: 154  --DEAHLDTPLPAFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRDPVLTD 211

Query: 250  PDHYLKNRSEMVS---IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               +        S   + + L  A++NT +IA +    +    P LP +   +    Q  
Sbjct: 212  AGPWWLKPPADASAPFVAAGLQAAVDNTAQIADQTDVTITFKQPQLPHYQTPD----QLA 267

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++ L   A  GL  R     I        Y+QRL +EL+VI +M F+ YFL+V D + +
Sbjct: 268  SKDYLTKLAQEGLANRFHDQPI-----PTTYQQRLQYELDVIIKMGFADYFLVVWDVMNY 322

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A K NI  G GRGS AGS+ +YAL IT++DP+ + LLFERFLNP R  MPD D+D   +R
Sbjct: 323  AHKVNIMTGAGRGSAAGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLDIPDNR 382

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R E+I+YV +KYG   +AQIITFG+  AK A+RDV R   M   + +   + IPN     
Sbjct: 383  RGELIQYVHDKYGRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPNLLHMD 442

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +           +      P    L + +  LEGL RH STHAAGIV+ + PL+  V + 
Sbjct: 443  LKTAYDQSQP-LKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQ 501

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                  L  TQ     +E  GL+K DFLGLK L +L  +  F+ +  G   D   IP +D
Sbjct: 502  -PSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRTFDPKQIPLND 560

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G++  L  ++P   ED++A+ +LYRPGP++NI  +  RK
Sbjct: 561  QPTLALFARGDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMENIDTFIARK 620

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+E I    P ++ +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM KK    +
Sbjct: 621  NGQEPIAYPDPALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSKKKSSVL 680

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
              ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+++++  A++K H P 
Sbjct: 681  AAEQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYLKVHDPA 740

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F AA M   M+N+ K++ + Q+A+   + ++ P +NT    FK+ D +I + L ++KG+
Sbjct: 741  AFFAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLSDGKIRFGLLSVKGM 800

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                +  I  A  + PF    D   R++ K L     + L+ AGA D F  +R Q + +L
Sbjct: 801  RRDFSEAIFTARKNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRAQTIANL 860

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D +    +            +F+                   +  R E E  VLG Y SG
Sbjct: 861  DELINSVKL-----AGNDVGLFSVL------APKPIVVPEMPAGERLEEEANVLGVYLSG 909

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+D Y P+  +  +    +      G  + +  +V   ++ +T+ G  + +V   +   
Sbjct: 910  HPVDKYAPLKTQYTLVNVVDLAE---GRTVDILLLVRHIKRIRTKTGKPMAFVDGQDATG 966

Query: 1026 EYEANFFP 1033
                  FP
Sbjct: 967  TVSLTVFP 974


>gi|239631558|ref|ZP_04674589.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239526023|gb|EEQ65024.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 1098

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 325/1028 (31%), Positives = 517/1028 (50%), Gaps = 59/1028 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQVHS+Y+LL   L+L++++    +    AIA+TDTN ++  +EF ++A AAG++P
Sbjct: 2    TFTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q+ ID                    ++++    +GY +L+++ +++ L      S 
Sbjct: 62   LLGMQIAIDDA-----------------KLLVIAKNNQGYHQLLKISTQIMLAT----SP 100

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
                  L      GL+ +T     P   A   N    A   L        + +YV L   
Sbjct: 101  VAFADLL---PLTGLVAIT-LPDSPFSAAVVANDHDRAVAFLQELDNKQPEAVYVGL--- 153

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               + + ++ +   A + +L L+A  N L+    D     V+ A+   + ++ +D     
Sbjct: 154  --DEAHLDTPLPAFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRDPVLTD 211

Query: 250  PDHYLKNRSEMVS---IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               +        S   + + L  A++NT +IA +    +    P LP +   +    Q  
Sbjct: 212  AGPWWLKPPADASAPFVAAGLQAAVDNTAQIADQTDVTITFKQPQLPHYQTPD----QLA 267

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++ L   A  GL  R     I        Y+QRL +EL+VI +M F+ YFL+V D + +
Sbjct: 268  SKDYLTKLAQEGLANRFHDQPI-----PTTYQQRLQYELDVIIKMGFADYFLVVWDVMNY 322

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A K NI  G GRGS AGS+ +YAL IT++DP+ + LLFERFLNP R  MPD D+D   +R
Sbjct: 323  AHKVNIMTGAGRGSAAGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLDIPDNR 382

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R E+I+YV +KYG   +AQIITFG+  AK A+RDV R   M   + +   + IPN     
Sbjct: 383  RGELIQYVHDKYGRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPNLLHMD 442

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +           +      P    L + +  LEGL RH STHAAGIV+ + PL+  V + 
Sbjct: 443  LKTAYDQSQP-LKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQ 501

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                  L  TQ     +E  GL+K DFLGLK L +L  +  F+ +  G   D   IP +D
Sbjct: 502  -PSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRTFDPKQIPLND 560

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G++  L  ++P   ED++A+ +LYRPGP++NI  +  RK
Sbjct: 561  QPTLALFARGDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMENIDTFIARK 620

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+E I    P ++ +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM KK    +
Sbjct: 621  NGQEPIAYPDPALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSKKKSSVL 680

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
              ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+++++  A++K H P 
Sbjct: 681  AAEQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYLKVHDPA 740

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F AA M   M+N+ K++ + Q+A+   + ++ P +NT    FK+ D +I + L ++KG+
Sbjct: 741  AFFAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLSDGKIRFGLLSVKGM 800

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                +  I  A  + PF    D   R++ K L     + L+ AGA D F  +R Q + +L
Sbjct: 801  RRDFSEAIFTARKNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRAQTIANL 860

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D +    +            +F+                   +  R E E  VLG Y SG
Sbjct: 861  DELINSVKL-----AGNDVGLFSVL------APKPIVVPEMPAGERLEEEANVLGVYLSG 909

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+D Y P+  +  +    +      G  + +  +V   ++ +T+ G  + +V   +   
Sbjct: 910  HPVDKYAPLKTQYTLVNVVDLAE---GRTVDILLLVRHIKRIRTKTGKPMAFVDGQDATG 966

Query: 1026 EYEANFFP 1033
                  FP
Sbjct: 967  TVSLTVFP 974


>gi|167754597|ref|ZP_02426724.1| hypothetical protein CLORAM_00099 [Clostridium ramosum DSM 1402]
 gi|167705429|gb|EDS20008.1| hypothetical protein CLORAM_00099 [Clostridium ramosum DSM 1402]
          Length = 1017

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 352/1023 (34%), Positives = 548/1023 (53%), Gaps = 52/1023 (5%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQV+SSYS     + + +++ K +     A+A+TD +N++ A+E ++ A   GI+ + G
Sbjct: 4    HLQVYSSYSFQNSTILIEDLVKKASDLHYEALALTDKDNMYGAMELAKYAKKYGIKAVFG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             +  +++   +               ++LL     GY  L+++ S + L ++G     I 
Sbjct: 64   LEASVEINHEI-------------YPLLLLARDVTGYFDLVKITSEICLSERG----AIS 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG- 191
            L  L     E L +++    G I+R         A K L  FK  F +  YV LQ H   
Sbjct: 107  LEALSLY-REHLFVISACKEGIIERLILKELDSEALKYLELFKNTF-NNFYVGLQNHGIA 164

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
              +    ++V LA    +P+  TN   +L++++    D+L A A        D       
Sbjct: 165  MQQKLNERLVALATLQNIPICVTNEVRYLNKDEAFTLDLLQASAKG---MMLDLEHQVQT 221

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
              L  +S          + +ENT +I R C+  +      LP++   +  D      + L
Sbjct: 222  DQLYLKSSFEMESLFDKKYIENTNDIIRLCNVTIPTDQMHLPKYPVPKDGDAG----DYL 277

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R   + GL+ R     I       +Y +RL  EL VI +M F+ YFLIV D++++AK + 
Sbjct: 278  RQLCLVGLKKRFKGKNI-----PNEYIERLKKELTVINKMGFNDYFLIVFDYVRYAKMHK 332

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I VGPGRGS AGS+ AY L IT +DPLR+ LLFERFLN +R+SMPD DIDF  DRRDEV+
Sbjct: 333  ILVGPGRGSAAGSLVAYVLGITGVDPLRYDLLFERFLNEERISMPDIDIDFQDDRRDEVV 392

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQ 490
             YV  KYGHE VAQI+TF +   K A++D+G+ L +P  +++ L K IP +  +  S  +
Sbjct: 393  NYVTEKYGHEHVAQIVTFSTYGPKVAIKDLGKVLGVPLPRLELLTKNIPTNYKNRKSARE 452

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   F+     DP++ +++     +E L R+ STHAAG+V+ +  L Q+VP+ R   
Sbjct: 453  VFETSYSFQSMVNKDPALRKIMPAVFIVEKLPRNISTHAAGVVLSNDVLDQVVPLVRGPN 512

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609
            +   VTQ++  +IE+ GL+K DFLGLK LT++   + D      V+++++ I   D +TY
Sbjct: 513  NG-VVTQYSKDYIEEVGLLKMDFLGLKNLTIIDYIIKDIAKNHQVEININDIDLQDKKTY 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             +++   T GIFQLESSGM+  L  MQ DC++D+IA ++L+RPGP+ NI  Y  RK GKE
Sbjct: 572  EMISRGDTFGIFQLESSGMKNLLVKMQCDCLDDVIAAIALFRPGPMANIPSYIARKKGKE 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I      + P+LK T G+++YQEQ+MQ AQL++G+SL++AD+LR+AM KK    M   K
Sbjct: 632  PITYPLECLKPILKSTYGILLYQEQIMQAAQLVAGFSLAKADILRKAMSKKTASLMKAMK 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI G   NG S+  AV +FEL+ +FA+YGFNKSH+  Y  I+Y  A++K ++P+EF +
Sbjct: 692  SEFIQGGIANGFSELEAVKVFELIERFANYGFNKSHSVVYGYIAYWLAYLKANFPLEFFS 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++ E  +        Q+ +++ ++++ PS+N     FKV D  I YSL AIK VG   
Sbjct: 752  ALLSNEQSSDASKLSCIQEGKKYGVKLLAPSINYSTDRFKVEDGNIRYSLLAIKNVGYAG 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
             + I     +  F  + DF SR++S KLN ++L+SL+ AGA D F  +R  + Q+L  I 
Sbjct: 812  YKAIEAERQNGTFKDIFDFVSRMESSKLNSKMLDSLIMAGAFDEFKLNRTTIKQNLHKIM 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA+                      ++  +     +N     E E+ VLG Y + HP+ 
Sbjct: 872  EYAELKN---------------SIGIEEPPILTIVRDNRIKVLEEEKMVLGVYLTMHPIA 916

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            + K  L++  I    E    I    +R+   +   +    +KG  + +V   +   E +A
Sbjct: 917  LIKNNLKEQ-IVNLNELSNYID-QPVRVIMALSRVKVIVDKKGQEMCFVDGYDETGEVDA 974

Query: 1030 NFF 1032
              F
Sbjct: 975  VVF 977


>gi|293400488|ref|ZP_06644633.1| DNA polymerase III, alpha subunit [Erysipelotrichaceae bacterium
            5_2_54FAA]
 gi|291305514|gb|EFE46758.1| DNA polymerase III, alpha subunit [Erysipelotrichaceae bacterium
            5_2_54FAA]
          Length = 1038

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 341/1024 (33%), Positives = 561/1024 (54%), Gaps = 42/1024 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL V S Y+LL+  +++  I+D        A+A+ D   +  A+ F   A  A IQPI 
Sbjct: 14   VHLHVRSCYTLLQSTMTIQKIVDSAKRYGYHAVALCDKEVMHGAMAFYHMAKKADIQPIF 73

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++++  ++ +                +LL     GYQ L++L + +   +   +  ++
Sbjct: 74   GMEVEVAEEEGI-------------FGFILLAKNDNGYQALMKLSTMLNTKE---RKEQL 117

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190
             +  L    T+  ++LT G    ++        +     L   K+ F    YV + R+  
Sbjct: 118  TMEELLTY-TKDCVVLTNGDQNQMETYLIKEEMEHLAAFLQRCKESFA-TFYVAISRNDS 175

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
               R +   +  L    ++P  A +   F   +  E++  L A+     +  K       
Sbjct: 176  PLLRQKNRLLKALCQQMQIPTTALSRIYFDEAKGEESYKTLCAINQGVSLDDKMLNYSPK 235

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             ++            D   A +   +IA+ C   ++    ILP+F  +         E  
Sbjct: 236  RYFRSKEEMAELYDEDDLAASD---KIAQMCHVEMKFPKAILPKFKNRYGM----SSEEF 288

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GLE R+             Y QRL +EL+VI  M ++ YFLIV DFI++AK  
Sbjct: 289  LRRLCHKGLEKRMQ-----YQKIPSVYEQRLRYELDVIISMGYADYFLIVWDFIRFAKTQ 343

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +I +GPGRGS AGS+ AY L IT  DP+R+ LLFERFLNP+R+SMPD D DF  DRRDEV
Sbjct: 344  DIYIGPGRGSAAGSLVAYCLGITHADPIRYHLLFERFLNPERVSMPDIDTDFPDDRRDEV 403

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I YV + YG   V+ IITF +L AK  LRDVG+A+Q+   Q+D LCKL+PN P   +   
Sbjct: 404  IAYVHDLYGEHHVSHIITFNTLAAKQVLRDVGKAMQVAPRQIDLLCKLVPNRPKVTL-QD 462

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A  +  +F++   +   + +L  I+ +LEGL RH+S HAAGI++ +  +S + P+  DV 
Sbjct: 463  AYQERVKFKQMINSGEQMRKLFAIALQLEGLPRHSSLHAAGIILSNEDISNVCPLI-DVD 521

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
              +  TQF M+++E+ GLIK DFLGL+ LT++ + +  +  +  ++D+  IP DD +TY 
Sbjct: 522  EGMCATQFTMEYLEELGLIKMDFLGLRNLTIIDEIVHQINAKEKRLDIMHIPLDDAKTYQ 581

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L+ +  T+G+FQLES GM+  +  M+P C EDI+A V+L+RPGP++NI  Y   +   EK
Sbjct: 582  LIRSVDTVGVFQLESEGMKNLIRKMKPTCFEDIVATVALFRPGPMENIPRYLECRTHPEK 641

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP + P+L+ T GV+IYQEQVMQIAQ ++G+SL +AD LR+A+ KK  +E+   +E
Sbjct: 642  VDYLHPDLKPILENTYGVMIYQEQVMQIAQTMAGFSLGKADNLRKAISKKKGKELQSLRE 701

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ GA + G  +++A+ ++EL+ KFA+YGFN+SH+ AY +I+YQ A++K + P+ F  A
Sbjct: 702  DFVEGAKQKGYEESLAIRVYELIMKFANYGFNRSHSVAYGMIAYQMAYLKANAPLYFFTA 761

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +   + +  K  ++  +AR+ +I+I+ PS+N     +++  N + + L  IKG+G   +
Sbjct: 762  LLNSVIGSETKTSEYVFEARKRHIEILLPSINQSSNQYEIEGNALRFPLVGIKGIGNAVS 821

Query: 851  RHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
              ++E       F    DF +R++ +KL ++ +E L+FAGALD F  +R  LL SLD+  
Sbjct: 822  NVLIEERQKRGNFKDFFDFVARMEGQKLGKKTMEMLIFAGALDEFKINRSSLLASLDDAI 881

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +Y   V+    ++   +F  E  +     +L++    N++ R E E+ +LGFY S HP+ 
Sbjct: 882  RYGDLVKIEDQDQI--LFDFELVSKPALTSLKE----NAAQRAEREKEMLGFYLSAHPIT 935

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +  +++ G+       + +  + ++   MV   +Q +T+ G  + +V  ++   +++ 
Sbjct: 936  ALRDKMQQ-GLVPLIALTSHLH-SYVKFICMVERTKQFRTKNGHLMMFVVGADETGKFDL 993

Query: 1030 NFFP 1033
               P
Sbjct: 994  VCMP 997


>gi|213966980|ref|ZP_03395130.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. tomato
            T1]
 gi|302059720|ref|ZP_07251261.1| error-prone DNA polymerase [Pseudomonas syringae pv. tomato K40]
 gi|302134128|ref|ZP_07260118.1| error-prone DNA polymerase [Pseudomonas syringae pv. tomato NCPPB
            1108]
 gi|213928302|gb|EEB61847.1| DNA polymerase III, alpha subunit [Pseudomonas syringae pv. tomato
            T1]
          Length = 1031

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 264/1037 (25%), Positives = 446/1037 (43%), Gaps = 80/1037 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   + D+       A+AITD   L   +   Q +   G+  I
Sbjct: 5    YAELHCLSNFSFQRGASSARELFDRALRHGYAALAITDECTLAGIVRAWQASKDTGLPLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++                  P IVLLV    GYQ L  L++      + K   R
Sbjct: 65   VGSEMHLENG----------------PKIVLLVENLTGYQALCTLITVARRRAK-KGEYR 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L     +    L +      G         +           ++ F +RL++ ++ HR
Sbjct: 108  LLLEDFDHLPGGLLAIWLADIEGDAQACLAQGN---------WLRERFAERLWLGVELHR 158

Query: 191  G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQKDRPRV 248
            G  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V         
Sbjct: 159  GADDEQRLADLLALAQSLAIPAVASGDVHMHARGRRALQDTITAIRHHTTVAEAGHLLFA 218

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + +L++   +   + D   A   ++ IARRC+F         P  +  +     +   
Sbjct: 219  NGERHLRSLDALAEHYPDWLLA--ESLRIARRCTFTFDQLHYEYPHELVPKG----QTST 272

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR     G+  R  +G           R +++ EL +I   KF  YFL V D +++A+
Sbjct: 273  SWLRELTERGIRRRWPRGLGVAA------RAQVEKELALITEKKFDSYFLTVHDIVEFAR 326

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              +I    GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  DRR+
Sbjct: 327  SQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERDEPPDIDVDFEHDRRE 385

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  +YG  R A      +     ALRDV + L +P  Q++ L            S
Sbjct: 386  EVIQYIFRRYGRGRAALTAVASTYHGSGALRDVAKVLGLPPDQINALADAFSRWSDSLPS 445

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             + + +           P + R+L ++ +L G  RH S H  G VI + PL  LVP+   
Sbjct: 446  PERLREY----GFDAETPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLDTLVPVENA 501

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607
              ++  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +P DD  
Sbjct: 502  AMAERTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKQWTLASLPGDDRP 561

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665
            TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V+    R+
Sbjct: 562  TYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLRRR 621

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N +E I    P +  + + T GV ++QEQVM++A + + Y+  EAD LRRAM    +   
Sbjct: 622  NNEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEADQLRRAMAAWKRHGG 680

Query: 726  -DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
             D  +ER  +G   NG     A  IFE +  F  YGF +SHAA++A+++Y + W+K H P
Sbjct: 681  LDPHRERLRTGMLANGYDADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEP 740

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------DNRI 835
              F  A +           +  QDAR+ +I+I    V     D  +          +  I
Sbjct: 741  AAFTCALINSWPMGFYSPDQLLQDARRHHIEIRSVDVRYSHWDCTLEPLDHPDSTRNLAI 800

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L  ++      A  I  A + +PF    D   R     L+ R  E+L  +GAL    
Sbjct: 801  RLGLRMLRSFREEDALRIEAARSKRPFADATDLAQRA---GLDSRAAEALADSGALRGLI 857

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R +    +  +                 +F                 +   +     +
Sbjct: 858  GHRHRARWEVAGV------------EAQRPLFDDVTSEEVQ----VTLPLPTVAEDLVAD 901

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
               LG     HPL + +  L     +  ++ +A      + +A +V+ +Q+  T  G  +
Sbjct: 902  YATLGTTLGPHPLALLRRQLAAKRFRSSQDLLALENNRTLSVAGLVIGRQRPGTASG--V 959

Query: 1016 GWVTFSEPAKEYEANFF 1032
             +VT  +         +
Sbjct: 960  TFVTLEDEFGMVNVVVW 976


>gi|116494849|ref|YP_806583.1| DNA polymerase III, alpha subunit [Lactobacillus casei ATCC 334]
 gi|116104999|gb|ABJ70141.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus casei
            ATCC 334]
          Length = 1098

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 323/1028 (31%), Positives = 515/1028 (50%), Gaps = 59/1028 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQVHS+Y+LL   L+L++++    +    AIA+TDTN ++  +EF ++A AAG++P
Sbjct: 2    TFTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q+ ID                    ++++    +GY +L+++ +++ L      S 
Sbjct: 62   LLGMQIAIDDA-----------------KLLVIAKNNQGYHQLLKISTQIMLAT----SP 100

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
                  L      GL+ +T     P   A   N    A   L        + +YV L   
Sbjct: 101  VAFADLL---PLTGLVAIT-LPDSPFSAAVVANEHDRAVAFLQELDNKQPEAVYVGL--- 153

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               + + ++ +   A + +L L+A  N L+    D     V+ A+   + ++ +D     
Sbjct: 154  --DEAHLDTPLPAFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRDPVLTD 211

Query: 250  PDHYLKNRSEMVS---IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               +        S   + + L  A++N  +IA +    +    P LP +   +    Q  
Sbjct: 212  AGPWWLKPPADASAPFVAAGLQAAVDNAAQIADQTDVTITFKQPQLPHYQTPD----QLA 267

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++ L   A  GL  R     I        Y+QRL +EL+VI +M F+ YFL+V D + +
Sbjct: 268  SKDYLTKLAQEGLANRFHDQPI-----PTTYQQRLQYELDVIIKMGFADYFLVVWDVMNY 322

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A K NI  G GRGS  GS+ +YAL IT++DP+ + LLFERFLNP R  MPD D+D   +R
Sbjct: 323  AHKVNIMTGAGRGSATGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLDIPDNR 382

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R E+I+YV +KYG   +AQIITFG+  AK A+RDV R   M   + +   + IPN     
Sbjct: 383  RGELIQYVHDKYGRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPNLLHMD 442

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +           +      P    L + +  LEGL RH STHAAGIV+ + PL+  V + 
Sbjct: 443  LKTAYDQSQP-LKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQ 501

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                  L  TQ     +E  GL+K DFLGLK L +L  +  F+ +  G   D   IP +D
Sbjct: 502  -PSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRTFDPKQIPLND 560

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G++  L  ++P   ED++A+ +LYRPGP++NI  +  RK
Sbjct: 561  QPTLALFARGDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMENIDTFIARK 620

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+E I    P ++ +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM KK    +
Sbjct: 621  NGQEPIAYPDPALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSKKKSSVL 680

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
              ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+++++  A++K H P 
Sbjct: 681  AAEQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYLKVHDPA 740

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F AA M   M+N+ K++ + Q+A+   + ++ P +NT    FK+ D +I + L ++KG+
Sbjct: 741  AFFAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLSDGKIRFGLLSVKGM 800

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                +  I  A  + PF    D   R++ K L     + L+ AGA D F  +R Q + +L
Sbjct: 801  RRDFSEAIFTARKNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRAQTIANL 860

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D +    +            +F+                   +  R E E  VLG Y SG
Sbjct: 861  DELINSVKL-----AGNDVGLFSVL------APKPIVVPEMPAGERLEEEANVLGVYLSG 909

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+D Y P+  +  +    +      G  + +  +V   ++ +T+ G  + +V   +   
Sbjct: 910  HPVDKYAPLKTQYTLVNVVDLAE---GRTVDILLLVRHIKRIRTKTGKPMAFVDGQDATG 966

Query: 1026 EYEANFFP 1033
                  FP
Sbjct: 967  TVSLTVFP 974


>gi|294339290|emb|CAZ87646.1| Error-prone DNA polymerase [Thiomonas sp. 3As]
          Length = 1037

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 271/1037 (26%), Positives = 464/1037 (44%), Gaps = 64/1037 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++  P +V L   S++S L GA     ++++        +A+TD  +L   +     A A
Sbjct: 1    MDPLPDYVELHCRSNFSFLTGASHPEELVERAQELHYAGLAVTDECSLAGIVRAHGAAKA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+  ++G Q  ++  +  +             ++V+L     GY  L E ++R+     
Sbjct: 61   AGLPLLVGAQFAVEGDEKTRTPP---------FTLVVLACNLNGYGNLCEFITRLRRAS- 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K S R+    +        ++L   S           + +   +        F  R+++
Sbjct: 111  PKGSYRLDRQSITGEALADCVVLAVPS--------RQATDEQLLELGAWLLARFTGRVWL 162

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             ++ HR  D  R   ++  LA    +PLVA  +            D L A+    +   +
Sbjct: 163  AVELHRRLDDERWLERLQDLAEATAIPLVAAGDVHMHRRSRKPLQDTLTAIRLG-LPIAE 221

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                + P+     RS +    S  PE L  T+ +A RC F L       P+ +    +  
Sbjct: 222  CGHALQPNAERHLRSRLRLALSYPPELLAETLRVAARCRFSLDELRYRYPKEVIPAGE-- 279

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                +  LR +   G   R   G  A        +  L+ EL +IA + ++ YFL V D 
Sbjct: 280  --TADGYLRRRVYEGAGRRWPDGLHA------RVQDLLEHELALIAELGYAHYFLTVDDI 331

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +A+  +I    GRGS A S   YAL IT++DP +  +LFERF++ +R   PD D+DF 
Sbjct: 332  VAFARSRHIL-CQGRGSAANSAVCYALGITEVDPEQQQVLFERFISKERNEPPDIDVDFE 390

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EVI+Y+  KYG +R A        + K+ALRDVG+AL      V+RL + +    
Sbjct: 391  HERREEVIQYLYAKYGRDRAALTAAVIRYRPKSALRDVGKALGFDLETVERLARNVQWWD 450

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               V+ + + +             V + + + ++L G  RH S H  G V+ + PLS+LV
Sbjct: 451  GREVARERLEEV----GLDPEALGVQQWMALVRQLLGFPRHLSQHTGGFVLTEGPLSRLV 506

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+      +  V +++   ++ AGL+K D L L  LT ++K+LD + Q RG    +  IP
Sbjct: 507  PIENASMPERTVIEWDKDDLDAAGLLKVDILALGMLTAIRKALDAIGQSRGQVFAMQDIP 566

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D +TY +L    ++G+FQ+ES   +  L  +QP C  D++   ++ RPGPI   +V+ 
Sbjct: 567  REDPQTYDMLCQADSVGVFQVESRAQQGMLPRLQPRCFYDLVIETAIVRPGPIQGGMVHP 626

Query: 663  NRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
                 + K  +V     ++ +L+ T GV ++QEQVMQIA + +G+S  EAD LRRAM   
Sbjct: 627  YLNRRQGKETVVYPSKDLESVLQRTLGVPVFQEQVMQIAMVAAGFSAGEADGLRRAMAAW 686

Query: 721  IKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
             +    +K ++R ISG ++ G     A +I+E +  F++YGF +SHAA++A++ Y +AW+
Sbjct: 687  RRTGSLEKYRDRLISGMAERGYPPDFAQSIYEQVQGFSEYGFPESHAASFALLVYASAWI 746

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----RI 835
            K H+P EFL A +  +        +  QDA++  + + P  V     D  + +      +
Sbjct: 747  KRHHPAEFLMALLNSQPMGFYTPSQLVQDAKRHGVTVRPVDVLHSDWDCTLEEGVPYPTV 806

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L  +KG+G      I  A    P    ED   R    +L+   +  L  A AL    
Sbjct: 807  RLGLRLVKGLGREVGWRIANARLHSPPVDAEDLAKRA---QLDTPAMRQLAAADALRSLS 863

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R Q +     +++    +  +     E+                +            +
Sbjct: 864  GHRRQQVWEATAVERLPALL--DDAAPQEDWL--------------ELPAPPEGEDIVFD 907

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     HPL + +P+L K  ++   E      G  +R   +V  +QQ +T KG+  
Sbjct: 908  YATTGLSLRRHPLALLRPLLAKRRLQTAAELAQAPDGRIVRACGIVTLRQQPETAKGT-- 965

Query: 1016 GWVTFSEPAKEYEANFF 1032
             +V+  +     +   +
Sbjct: 966  TFVSLEDETGTVQVICW 982


>gi|229552164|ref|ZP_04440889.1| possible DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
 gi|229314466|gb|EEN80439.1| possible DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
          Length = 1098

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 327/1028 (31%), Positives = 510/1028 (49%), Gaps = 59/1028 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQVHS+Y+LL   L+L +++         A+A+TDTN ++  +EF ++A AAG++P
Sbjct: 2    TFTQLQVHSNYTLLHSPLALPDLIQAAKNRGYSAVALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q++I                     ++++     GY +L++L +++ L  Q     
Sbjct: 62   LLGMQIEIADA-----------------KLLVIAENNTGYHQLLKLSTQIMLAQQP---- 100

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +  + L  +   GL  +T     P   A        A+  L T K      LY+ +   
Sbjct: 101  -LAFADLLPLN--GLAAVT-LPDSPFGVAVSERHEDQAQTFLTTLKAKQPSSLYIGV--- 153

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               + + E  +   A T +LPL+A  N L+    D     V++A+   + ++ +D     
Sbjct: 154  --DEEHLEGTLPAFADTVKLPLLALGNVLYRDPTDAFTQKVMVAIETGSQLNFRDPVLTD 211

Query: 250  PDHYLKNRSEMVSI---FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                        +     + L  A+  T  IA R    +    P LP +   +    +  
Sbjct: 212  AGPAWLKPPTDAAKPFVQAGLQAAVTQTEAIAARADVTIDFKQPQLPHYQTPDQTPSK-- 269

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L   A +GL  R    +I        Y+ RL +EL VI  M F+ YFL+V D + +
Sbjct: 270  --DYLTKLAESGLAKRFHGQSI-----PPAYQDRLQYELRVIIEMGFADYFLVVWDVMNY 322

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A K NI  G GRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R  MPD D+D   +R
Sbjct: 323  AHKVNIMPGAGRGSAAGSLVSYALAITEVDPIEYNLLFERFLNPARAQMPDIDLDIPDNR 382

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R E+I+YV +KYG   +AQIITFG+  AK A+RDV R   +   + +   K IPN     
Sbjct: 383  RGELIQYVHDKYGKNHMAQIITFGTFGAKQAIRDVARVFGLSQFESNTWSKAIPNLFYID 442

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +           +      P    L + +  LEGL RH STHAAGIV+ + PL+  V + 
Sbjct: 443  LKTA-YEQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQ 501

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                  L  TQ     +E  GL+K DFLGLK L +L  +  F+ +  G   D   IP DD
Sbjct: 502  -PSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGKPFDPKAIPLDD 560

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ESSG++  L  ++P   ED++A+ +LYRPGP++NI  +  RK
Sbjct: 561  QPTLALFARGDTNGVFQFESSGIKNVLRKLRPTAFEDVVAVNALYRPGPMENIDTFIARK 620

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+E I    P +  +L+ T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM KK    +
Sbjct: 621  NGQEPIAYPDPALAKILRPTYGVLVYQEQVMQVANVMGGFSLGEADLLRRAMSKKKSSVL 680

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
              ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+ +++  A++K HYP 
Sbjct: 681  AAEQDKFIEGALKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSKVAFWLAYLKVHYPA 740

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F AA M   M+N+ K++ + Q+A+   + ++ P +N     FK+   +I + L +IKG+
Sbjct: 741  AFFAALMNASMNNLPKLRTYVQEAKARKVGLLGPDINQSNGGFKLSQGKIRFGLLSIKGM 800

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                   I  A  + PF  L D   R+D K L     ++   AGA D F  +R Q L +L
Sbjct: 801  RRDFVEAIFAARKNGPFKDLRDLLQRLDPKWLKTDYYKAPTLAGAFDQFSNNRAQTLANL 860

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D +    +            +F+             +     +S R E E  VLG Y SG
Sbjct: 861  DELINSVKL-----AGNDVGLFSML------APKTIEVPEMPASERLEAEAEVLGVYLSG 909

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+D Y P+  +  +    +      G  + +  +V   ++ +T+ G  + ++   +   
Sbjct: 910  HPVDKYAPLKTQYRLINVSDLEE---GRAVDILLLVRHIKRIRTKTGKPMAFIDGQDATG 966

Query: 1026 EYEANFFP 1033
                  FP
Sbjct: 967  NVSLTIFP 974


>gi|258592047|emb|CBE68352.1| Error-prone DNA polymerase [NC10 bacterium 'Dutch sediment']
          Length = 1062

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 282/1050 (26%), Positives = 458/1050 (43%), Gaps = 76/1050 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S S+  L   S +S LEGA   + ++++       A+A+TD + ++  +    KA  
Sbjct: 14   MA-SHSYTPLWCKSHFSFLEGASHPDELVEEAHRLGLKALALTDRDGVYGIVRAHVKARE 72

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+  I+G Q+ +            +        +VLL    +GY  L  L++   L   
Sbjct: 73   LGLHLIVGAQVALAD-------LPVRRTQTGHSILVLLAQDRDGYSNLCRLITTGRLRS- 124

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K    +  + + +    GLI L GG                 ++     + +FGDRLY 
Sbjct: 125  PKGESSVTWNEVCQ-HAGGLIALWGGEQS------LRTGEADPDEVAGQLRDVFGDRLYA 177

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQ 242
             L RHR  D  R E+++   A  + LPLVA    L+ ++      D L A+ H   V + 
Sbjct: 178  FLARHRQADEVRTEARLRARAARYGLPLVAATEVLYHTQIRRPLQDTLTAIRHGVAVSTA 237

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
              R +   +H LK+  +  ++F+D P A+  T E+A RC+F L       P         
Sbjct: 238  GRRLKPNAEHDLKSPHDFAALFADDPAAIARTEEVAGRCAFSLAELRYRYPSERLPNG-- 295

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                    LR     G   R        G    D  ++L+ EL +I  +++ GYFL + +
Sbjct: 296  --TTSSQRLRQLTFEGARRRY------DGEVPPDVLRQLETELALIDALEYPGYFLTMWE 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +Q+ ++  I    GRGS A S   Y L IT IDP+R  LLFERF++ +R   PD D+D 
Sbjct: 348  IVQFCRQRGIL-CQGRGSAANSAVCYCLGITAIDPVRMGLLFERFISKERAEPPDIDLDI 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+EVI++V + YG    A +      + ++A+RDVG+AL +P + +DRL KL+ + 
Sbjct: 407  QHNRREEVIQHVYDTYGRSHAAMVANVIRYRPRSAVRDVGKALGLPETSMDRLAKLLSHH 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                       +  R        P    LL +S ++    RH S H  G ++G  P+  +
Sbjct: 467  GDIE------PEALRQAGLDPETPLHRHLLRLSSEILETPRHLSIHPGGFLLGHDPIWTI 520

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLI 601
            VP+         V Q++   +E  GL K D LGL  L+ L      L       +D++ I
Sbjct: 521  VPVENATMPGRTVIQWDKDDLEALGLFKVDLLGLGALSHLDLCFRLLKHHRGLDLDMAGI 580

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P +D  T+ ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI   +V+
Sbjct: 581  PPNDPSTFEMIQRADTVGVFQIESRAQMAMLPRLRPRSFYDLVIEVSIVRPGPIAGGMVH 640

Query: 662  NNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
               +  +  E ++  HP + P+L++T GV ++QEQVM++A + + Y+  EAD LRR M  
Sbjct: 641  PYLRRRRGEEPVLYPHPSLQPVLEKTLGVPLFQEQVMRLAMIAADYTPGEADQLRRDMAA 700

Query: 720  KI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
                  +++ +ER IS     GI+   A  +F  +  F +YGF +SHAA++A+I+Y TAW
Sbjct: 701  WRGPGRIERHRERLISRMQTKGIAAEFAERVFSQIQGFGEYGFPESHAASFALIAYATAW 760

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831
            +K HYP EF  A +  +           +DA++  + + P        D  +        
Sbjct: 761  LKRHYPAEFTCALLNAQPMGFYVPATIVEDAKRHGLLVRPVDAQASTWDCTLEPCPQSAA 820

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I   L  +KG+       I +A    PF SL DF  R     L++  L  L  AGA 
Sbjct: 821  GFAIRMGLRYVKGLREGDWNRIEQARHIAPFTSLADFSRRT---GLDKGALTVLAEAGAF 877

Query: 892  DCFG--------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            + FG          R   L      Q                           +      
Sbjct: 878  EGFGSVGTAQDRLDRRMALWGALGCQSEV-----------------TPLPTVVQEASPAL 920

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
            +    +     + R       GHPL   +  L+   +K      +   G+ +R A +V+ 
Sbjct: 921  TPLGVAEEIAWDYRRTDHSPRGHPLAPLRKALQAQSLKDARTIASMRHGSRVRYAGLVIC 980

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +Q+  T  G  + ++T  +         +P
Sbjct: 981  RQRPGTASG--VTFMTLEDETGFVNLVLWP 1008


>gi|330875010|gb|EGH09159.1| error-prone DNA polymerase [Pseudomonas syringae pv. morsprunorum
            str. M302280PT]
          Length = 1031

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 266/1037 (25%), Positives = 447/1037 (43%), Gaps = 80/1037 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   + D+       A+AITD   L   +   Q +   G+  I
Sbjct: 5    YAELHCLSNFSFQRGASSARELFDRALRHGYAALAITDECTLAGIVRAWQASKDTGLPLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++                  P IVLLV +  GYQ L  L++      + K   R
Sbjct: 65   VGSEMHLENG----------------PKIVLLVESLTGYQALCTLITVARRRAK-KGEYR 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +       +    L +      G         +           ++ F +RL++ ++ HR
Sbjct: 108  LLREDFDHLPDGLLAIWLADIEGDAQACLAQGN---------WLRERFAERLWLGVELHR 158

Query: 191  G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQKDRPRV 248
            G  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V         
Sbjct: 159  GADDEQRLADLLALAQSLAIPAVASGDVHMHARGRRALQDTITAIRHHTTVAEAGHLLFA 218

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + +L++   +   + D   A   TV IARRC+F         P  +  +     +   
Sbjct: 219  NGERHLRSLDALAEHYPDWLLA--ETVRIARRCTFTFDQLQYEYPHELVPKG----QTAT 272

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR     G+  R  +G           R +++ EL +I   KF  YFL V D +++A+
Sbjct: 273  SWLRELTERGIRRRWPKGLSVAA------RAQVEKELALITEKKFDSYFLTVHDIVEFAR 326

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              +I    GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  DRR+
Sbjct: 327  SQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISRERDEPPDIDVDFEHDRRE 385

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  +YG  R A      +     ALRDV + L +P  Q++ L            S
Sbjct: 386  EVIQYIFRRYGRGRTALTAVASTYHGSGALRDVAKVLGLPPDQINALADAFSRWSDALPS 445

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             + + +           P + R+L ++ +L G  RH S H  G VI + PL  LVP+   
Sbjct: 446  AERLREY----GFDAETPILKRVLTLTGELIGFPRHLSQHPGGFVISEHPLDTLVPVENA 501

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607
              ++  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +P DD  
Sbjct: 502  AMAERTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKQWTLASLPSDDRP 561

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665
            TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V+    R+
Sbjct: 562  TYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLRRR 621

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+E +    P +  + + T GV ++QEQVM++A + + Y+  EAD LRRAM    +   
Sbjct: 622  NGEEAVTYP-PKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEADQLRRAMAAWKRHGG 680

Query: 726  -DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
             D  +ER  +G   NG     A  IFE +  F  YGF +SHAA++A+++Y + W+K H P
Sbjct: 681  LDPHRERLRTGMLANGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEP 740

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------DNRI 835
              F  A +           +  QDAR+ +I+I P  V     D  +          +  I
Sbjct: 741  AAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSHWDCTLEPLDHPDSTRNLAI 800

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L  ++      A  I  A A +PF    D   R     L+ R  E+L  +GAL    
Sbjct: 801  RLGLRMLRSFREEDALRIEAARAKRPFADATDLTQRA---GLDSRAAEALADSGALRGLI 857

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R +    +  +                 +F                 +   +     +
Sbjct: 858  GHRHRARWEVAGV------------EAQRPLFDDLTSEEVQ----VTLPLPTVAEDLVAD 901

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
               LG     HPL + +  L     +  ++ +       + +A +V+ +Q+  T  G  +
Sbjct: 902  YATLGTTLGPHPLALLRRQLAAKRFRSSQDLLTLENNRTLSVAGLVIGRQRPGTASG--V 959

Query: 1016 GWVTFSEPAKEYEANFF 1032
             +VT  +         +
Sbjct: 960  TFVTLEDEFGMVNVVVW 976


>gi|258508368|ref|YP_003171119.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
 gi|257148295|emb|CAR87268.1| DNA polymerase III, alpha subunit [Lactobacillus rhamnosus GG]
 gi|259649682|dbj|BAI41844.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
          Length = 1098

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 329/1028 (32%), Positives = 512/1028 (49%), Gaps = 59/1028 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQVHS+Y+LL   L+L +++         A+A+TDTN ++  +EF ++A AAG++P
Sbjct: 2    TFTQLQVHSNYTLLHSPLALPDLIQAAKNRGYSAVALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q++I                     ++++     GY +L++L +++ L  Q     
Sbjct: 62   LLGMQIEIADA-----------------KLLVIAENNTGYHQLLKLSTQIMLAQQP---- 100

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +  + L  +   GL  +T     P   A        A+  L T K      LY+ +   
Sbjct: 101  -LAFADLLPLN--GLAAVT-LPDSPFGVAVSERHEDQAQTFLTTLKAKQPSSLYIGV--- 153

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               + + E  +   A T +LPL+A  N L+    D     V++A+   + ++ +D     
Sbjct: 154  --DEEHLEGTLPAFADTVKLPLLALGNVLYRDPTDAFTQKVMVAIEAGSQLNFRDPVLTD 211

Query: 250  PDHYLKNRSEMVSI---FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                        +     + L  A+  T  IA R    +    P LP +   +    Q  
Sbjct: 212  AGPAWLKPPTDAAKPFVQAGLQAAVTQTEAIAARADVTIDFKQPQLPHYQTPD----QTS 267

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++ L   A +GL  R    +I        Y+ RL++EL VI  M F+ YFL+V D + +
Sbjct: 268  SKDYLTKLAESGLAKRFHGQSI-----PPAYQDRLEYELRVIIEMGFADYFLVVWDVMNY 322

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A K NI  G GRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R  MPD D+D   +R
Sbjct: 323  AHKVNIMTGAGRGSAAGSLVSYALAITEVDPIEYNLLFERFLNPARAQMPDIDLDIPDNR 382

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R E+I+YV +KYG   +AQIITFG+  AK A+RDV R   +   + +   K IPN     
Sbjct: 383  RGELIQYVHDKYGKNHMAQIITFGTFGAKQAIRDVARVFGLSQFESNTWSKAIPNLFHID 442

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +           +      P    L + +  LEGL RH STHAAGIV+ + PL+  V + 
Sbjct: 443  LKTA-YEQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQ 501

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                  L  TQ     +E  GL+K DFLGLK L +L  +  F+ +  G   D   IP DD
Sbjct: 502  -PSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGKPFDPKAIPLDD 560

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ESSG++  L  ++P   ED++A+ +LYRPGP++NI  +  RK
Sbjct: 561  QPTLALFARGDTNGVFQFESSGIKNVLRKLRPTAFEDVVAVNALYRPGPMENIDTFIARK 620

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+E I    P +  +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM KK    +
Sbjct: 621  NGQEPIAYPDPALAKILKPTYGVLVYQEQVMQVANVMGGFSLGEADLLRRAMSKKKSSVL 680

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
              ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+ +++  A++K HYP 
Sbjct: 681  AAEQDKFIEGALKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSKVAFWLAYLKVHYPA 740

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F AA M   M+N+ K++ + Q+A+   + ++ P +N     FK+   +I + L +IKG+
Sbjct: 741  AFFAALMNASMNNLPKLRTYVQEAKARKVGLLGPDINQSNGGFKLSQGKIRFGLLSIKGM 800

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                   I  A  + PF  L D   R+D K L     ++   AGA D F  +R Q L +L
Sbjct: 801  RRDFVEAIFAARKNGPFRDLRDLLQRLDPKWLKTDYYKAPTLAGAFDQFSNNRAQTLANL 860

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D +    +            +F+             +     +S R E E  VLG Y SG
Sbjct: 861  DELINSVKL-----AGNDVGLFSML------APKTIEVPEMPASERLEAEAEVLGVYLSG 909

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+D Y P+  +  +    +      G  + +  +V   ++ +T+ G  + ++   +   
Sbjct: 910  HPVDKYAPLKTQYRLINVSDLEE---GRAVDILLLVRHIKRIRTKTGKPMAFIDGQDATG 966

Query: 1026 EYEANFFP 1033
                  FP
Sbjct: 967  NVSLTIFP 974


>gi|170690324|ref|ZP_02881491.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M]
 gi|170144759|gb|EDT12920.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M]
          Length = 1049

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 271/1038 (26%), Positives = 449/1038 (43%), Gaps = 64/1038 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S++S L GA     + ++ A     A+AITD  +L   +     A  A + 
Sbjct: 9    PAYAELFCLSNFSFLRGASHAEELAERAAQLGYSALAITDECSLAGVVRAHVAAKEAKLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G    +   D                 ++LL    EGY  L EL++        K  
Sbjct: 69   FIVGSYFRLVNADG-----------SPAFGLILLARNREGYGNLSELITLARTR-APKGE 116

Query: 129  VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L     E   L+ +    +  +    F     V + ++    + F  R +V L
Sbjct: 117  YRLTPQDLSRPDKEYRHLLGVPDCLAILVPS--FPAKEDVLDAQVEWLDETFPGRAWVGL 174

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              H R  D      V  +A   ++P+VA    L          D + A+     V  +  
Sbjct: 175  VLHQRAMDDIHRGAVEFVARNRDVPVVALGEVLMHVRSRKPLQDTITAIRVGKPV-HECG 233

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     RS +       P+AL  TV+IA RC+F L       P  +         
Sbjct: 234  YDLAPNAEQHLRSRLRLANLYSPDALAATVDIAARCTFSLDELRYEYPDELVPPGF---- 289

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 LR +   G + R   G           +++++ EL +I  +++  YFL V D ++
Sbjct: 290  TPGAYLRQETYIGAQRRFPSG------IPHHVQEQIEHELELIGDLQYEPYFLTVYDLVR 343

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I    GRGS A S   Y L +T++DP R ++LFERF++ +R   PD D+DF   
Sbjct: 344  FARSQHIL-CQGRGSAANSAVCYCLGVTEVDPARGNMLFERFISKERGEPPDIDVDFEHQ 402

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG +R A      + +A+  LR+ G+AL +    VD + K        
Sbjct: 403  RREEVIQYIYRKYGRDRAAIAAAVSTYRARGVLRETGKALGVDLQIVDAVAKSHHWFDNS 462

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               L+   +           P +     ++ +L G  RH S H+ G VI    L++LVP+
Sbjct: 463  ADLLKRFEEC----GLNPDTPLIRAWASLAAQLYGFPRHLSQHSGGFVISRGKLTRLVPV 518

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFD 604
                  +  V Q++   +E  GL+K D L L  L+ ++++LD    QRG + ++  IP +
Sbjct: 519  ENAAMPERSVIQWDKDDLESLGLLKIDVLALGMLSAIRRTLDLVSEQRGERFEMQDIPAE 578

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYN 662
            D  TY +++   T+G+FQ+ES      L  M+P    D++  V++ RPGPI    +  Y 
Sbjct: 579  DKATYDMISAADTVGVFQIESRAQMSMLPRMRPRTFYDLVIEVAIVRPGPIQGGAVHPYL 638

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721
             R+ G E +      +   L  T GV I+QEQVMQ+A L +G++  EAD LRRAM     
Sbjct: 639  RRRQGFEPVTYPGDALKTALGRTLGVPIFQEQVMQVAILAAGFTAGEADQLRRAMAAWKR 698

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K  + K  +R + G  + G     A  IFE +  F +YGF +SHAA++A++ Y ++W+K 
Sbjct: 699  KGGLGKYYDRIVLGMQERGYDLAFAEAIFEQIKGFGEYGFPESHAASFALLVYASSWLKC 758

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------NRI 835
            H P  FLAA +  +        +  QDA++  ++++P  V     +  +          +
Sbjct: 759  HEPEAFLAAMLNSQPMGFYSPSQLVQDAQRHGVKVLPVDVTISGWNSSLEPMAGEKRPAV 818

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L+ ++G+   TA  I  + A +PF S++D   R     L+RR L  L  A AL    
Sbjct: 819  RLGLSLLRGMKEGTAERIENSRAVRPFASVKDLARRA---ALDRRDLHILADANALAALA 875

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R + L             +       +++ A             +    + +     +
Sbjct: 876  GNRREALW------------QSVAAVPEKDMLAAAAVEDET----PELGAPSEANDILAD 919

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
             R +G     HPL++ +P L    +           G   R   +V  +Q+  T KG  +
Sbjct: 920  YRSVGLTLGRHPLELLRPQLLANRLMPAATLRTYRDGRLARGCGLVTVRQRPGTAKG--V 977

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +VT  +         +P
Sbjct: 978  VFVTLEDETGNVNVIIWP 995


>gi|199598719|ref|ZP_03212133.1| DNA polymerase III, alpha subunit [Lactobacillus rhamnosus HN001]
 gi|199590407|gb|EDY98499.1| DNA polymerase III, alpha subunit [Lactobacillus rhamnosus HN001]
          Length = 1098

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 328/1028 (31%), Positives = 512/1028 (49%), Gaps = 59/1028 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQVHS+Y+LL   L+L +++         A+A+TDTN ++  +EF ++A AAG++P
Sbjct: 2    TFTQLQVHSNYTLLHSPLALPDLIQAAKNRGYSAVALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q++I                     ++++     GY +L++L +++ L  Q     
Sbjct: 62   LLGMQIEIADA-----------------KLLVIAENNTGYHQLLKLSTQIMLAQQP---- 100

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +  + L  +   GL  +T   + P   A        A+  L T K      LY+ +   
Sbjct: 101  -LAFADLLPLN--GLAAVT-LPNSPFGVAVSERHEDQAQTFLTTLKAKQPSSLYLGV--- 153

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               + + E  +   A T +LPL+A  N L+    D     V++A+   + ++ +D     
Sbjct: 154  --DEEHLEGTLPAFADTVKLPLLALGNVLYRDPTDAFTQKVMVAIEAGSQLNFRDPVLTD 211

Query: 250  PDHYLKNRSEMVSI---FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                        +     + L  A+  T  IA R    +    P LP +   +    +  
Sbjct: 212  AGPAWLKPPTDAAKPFVQAGLQAAVTQTEAIAARADVTIDFKQPQLPHYQTPDQTPSK-- 269

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L   A +GL  R    +I        Y+ RL++EL VI  M F+ YFL+V D + +
Sbjct: 270  --DYLTKLAESGLAKRFHGQSI-----PPAYQDRLEYELRVIIEMGFADYFLVVWDVMNY 322

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A K NI  G GRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R  MPD D+D   +R
Sbjct: 323  AHKVNIMTGAGRGSAAGSLVSYALAITEVDPIEYNLLFERFLNPARAQMPDIDLDIPDNR 382

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R E+I+YV +KYG   +AQIITFG+  AK A+RDV R   +   + +   K IPN     
Sbjct: 383  RGELIQYVHDKYGKNHMAQIITFGTFGAKQAIRDVARVFGLSQFESNTWSKAIPNLFHID 442

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +           +      P    L + +  LEGL RH STHAAGIV+ + PL+  V + 
Sbjct: 443  LKTA-YEQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQ 501

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                  L  TQ     +E  GL+K DFLGLK L +L  +  F+ +  G   D   IP DD
Sbjct: 502  -PSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGKPFDPKAIPLDD 560

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ESSG++  L  ++P   ED++A+ +LYRPGP++NI  +  RK
Sbjct: 561  QPTLALFARGDTNGVFQFESSGIKNVLRKLRPTAFEDVVAVNALYRPGPMENIDTFIARK 620

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+E I    P +  +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM KK    +
Sbjct: 621  NGQEPIAYPDPALAKILKPTYGVLVYQEQVMQVANVMGGFSLGEADLLRRAMSKKKSSVL 680

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
              ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+ +++  A++K HYP 
Sbjct: 681  AAEQDKFIEGALKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSKVAFWLAYLKVHYPA 740

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F AA M   M+N+ K++ + Q+A+   + ++ P +N     FK+   +I + L +IKG+
Sbjct: 741  AFFAALMNASMNNLPKLRTYVQEAKARKVGLLGPDINQSNGGFKLSQGKIRFGLLSIKGM 800

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                   I  A  + PF  L D   R+D K L     ++   AGA D F  +R Q L +L
Sbjct: 801  RRDFVEAIFAARKNGPFKDLRDLLQRLDPKWLKTDYYKAPTLAGAFDQFSNNRAQTLANL 860

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D +    +            +F+             +     +S R E E  VLG Y SG
Sbjct: 861  DELINSVKL-----AGNDVGLFSML------APKTIEAPEMPASERLEAEAEVLGVYLSG 909

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+D Y P+  +  +    +      G  + +  +V   ++ +T+ G  + ++   +   
Sbjct: 910  HPVDKYAPLKTQYRLVNVSDLEE---GRAVDILLLVRHIKRIRTKTGKPMAFIDGQDATG 966

Query: 1026 EYEANFFP 1033
                  FP
Sbjct: 967  NVSLTIFP 974


>gi|191638356|ref|YP_001987522.1| DNA-directed DNA polymerase III, alpha subunit [Lactobacillus casei
            BL23]
 gi|190712658|emb|CAQ66664.1| DNA-directed DNA polymerase III, alpha subunit [Lactobacillus casei
            BL23]
 gi|327382384|gb|AEA53860.1| DNA polymerase III [Lactobacillus casei LC2W]
 gi|327385585|gb|AEA57059.1| DNA polymerase III [Lactobacillus casei BD-II]
          Length = 1098

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 324/1028 (31%), Positives = 516/1028 (50%), Gaps = 59/1028 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQVHS+Y+LL   L+L++++    +    AIA+TDTN ++  +EF ++A AAG++P
Sbjct: 2    TFTQLQVHSNYTLLHSPLALSDLISAAKSRGYSAIALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q+ ID                    ++++    +GY +L+++ +++ L      S 
Sbjct: 62   LLGMQIAIDDA-----------------KLLVIAKNNQGYHQLLKISTQIMLAT----SP 100

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
                  L      GL+ +T     P   A   N    A   L        + +YV L   
Sbjct: 101  VAFADLL---PLTGLVAIT-LPDSPFSAAVVANDHNRAVAFLQELDNKQPEAVYVGL--- 153

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               + + ++ +   A + +L L+A  N L+    D     V+ A+   + ++ +D     
Sbjct: 154  --DEAHLDTPLPTFATSQQLHLMALGNVLYRDPTDAFTQKVMAAIGDGSQLNFRDPVLTD 211

Query: 250  PDHYLKNRSEMVS---IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               +        S   + + L  A++N  +IA +    +    P LP +   +    Q  
Sbjct: 212  AGPWWLKPPADASAPFVAAGLQAAVDNAAQIADQTDVTITFKQPQLPHYQTPD----QLA 267

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++ L   A  GL  R     I        Y+QRL +EL+VI +M F+ YFL+V D + +
Sbjct: 268  SKDYLTKLAQEGLANRFHDQPI-----PTTYQQRLQYELDVIIKMGFADYFLVVWDVMNY 322

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A K NI  G GRGS AGS+ +YAL IT++DP+ + LLFERFLNP R  MPD D+D   +R
Sbjct: 323  AHKVNIMTGAGRGSAAGSLVSYALAITEVDPIAYDLLFERFLNPARAQMPDIDLDIPDNR 382

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R E+I+YV +KYG   +AQIITFG+  AK A+RDV R   M   + +   + IPN     
Sbjct: 383  RGELIQYVHDKYGRNHMAQIITFGTFGAKQAIRDVARVFGMSQFESNTWSRAIPNLLHMD 442

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +           +      P    L + +  LEGL RH STHAAGIV+ + PL+  V + 
Sbjct: 443  LKTAYDQSQP-LKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQ 501

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                  L  TQ     +E  GL+K DFLGLK L +L  +  F+ +  G   D   IP +D
Sbjct: 502  -PSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGRTFDPKQIPLND 560

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G++  L  ++P   ED++A+ +LYRPGP++NI  +  RK
Sbjct: 561  QPTLALFARGDTNGVFQFESAGIKNVLRKLRPTDFEDVVAVNALYRPGPMENIDTFIARK 620

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG+E I    P ++ +LK T GV++YQEQVMQ+A ++ G+SL EAD+LRRAM KK    +
Sbjct: 621  NGQEPIAYPDPALEKILKPTYGVLVYQEQVMQVASVMGGFSLGEADLLRRAMSKKKSSVL 680

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
              ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+++++  A++K H P 
Sbjct: 681  AAEQDKFIEGAVKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSMVAFWLAYLKVHDPA 740

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F AA M   M+N+ K++ + Q+A+   + ++ P +NT    FK+ D +I + L ++KG+
Sbjct: 741  AFFAALMNASMNNLPKLRTYVQEAKARQVALLGPDINTSNGGFKLSDGKIRFGLLSVKGM 800

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                +  I  A  + PF    D   R++ K L     + L+ AGA D F  +R Q + +L
Sbjct: 801  RRDFSEAIFTARKNGPFKDFRDLLQRLEPKWLKADNFKPLILAGAFDSFDDNRAQTIANL 860

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D +    +            +F+                   +  R E E  VLG Y SG
Sbjct: 861  DELINSVKL-----AGNDVGLFSVL------APKPIVVPEMPAGERLEEEANVLGVYLSG 909

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+D Y P+  +  +    +      G  + +  +V   ++ +T+ G  + +V   +   
Sbjct: 910  HPVDKYAPLKTQYTLVNVVDLAE---GRTVDILLLVRHIKRIRTKTGKPMAFVDGQDATG 966

Query: 1026 EYEANFFP 1033
                  FP
Sbjct: 967  TVSLTVFP 974


>gi|299137470|ref|ZP_07030652.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX8]
 gi|298600875|gb|EFI57031.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX8]
          Length = 1072

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 282/1046 (26%), Positives = 480/1046 (45%), Gaps = 43/1046 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     +V L V S++S LEGA     ++ + A  + PA+AI D N ++ A  F      
Sbjct: 1    MTD--RYVELHVASAFSFLEGASQPEELMKRAAELEMPAMAILDRNGVYGAARFHTSGNR 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPF--PTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
             G++  IG ++ +       M             P + LL  +  GYQ L +L+++  + 
Sbjct: 59   NGVRAHIGAEIAVSSFGTRWMPPAWLPNQFVAEPPRLPLLCESQAGYQNLCQLITQFKMR 118

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181
            ++ K         L +    GL+ LTGG  GP+  A      +   K +    +++G + 
Sbjct: 119  EKSKLEGSATWEDLHQYAA-GLVCLTGGEEGPLAAALAEGGEEAGRKAVERLVRIYGPNN 177

Query: 182  LYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            +YV +QRH    + +R    +++A +  LP++ATN   +    + E  D+  AV H T +
Sbjct: 178  VYVEVQRHYEREEEWRNQAAIRIACSLRLPVLATNGVRYAKAYEREVLDLFTAVRHHTEL 237

Query: 241  SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             Q  R        +L+  SEM  +F D+P A EN++E++ R  F L       P++   E
Sbjct: 238  DQAGRLLALNSQRHLRRASEMARLFHDVPNATENSIELSARLKFELDDLGYAFPKYPVPE 297

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 +  ++ LR +   G+  R   G        +  +++++ EL++IAR+ F+GYFLI
Sbjct: 298  ----DESMDSFLRKRVAEGIVRRY--GPKNDRALLERAKKQVEHELDLIARLGFAGYFLI 351

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +Q+ K  +I +  GRGS A S   YAL IT IDP+   LLFERFL+ +R   PD D
Sbjct: 352  VWDIVQFCKGRDILI-QGRGSAANSAVCYALEITVIDPVGMELLFERFLSENRGEWPDID 410

Query: 420  IDFCQD-RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            +D   + +R++ I+YV  +YG    A      + + K++ R+VG+AL      + RL  L
Sbjct: 411  LDLPSEGQREQAIQYVYQRYGELGAAMTANVITYRGKSSAREVGKALGFDQESLGRLSSL 470

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            +            IA   +     +  P + + LE+  +++ L RH   H+ G+VI    
Sbjct: 471  VSQWEWRG-KNDTIAHSFQHAGFDIKHPRIAKYLELCMRIQDLPRHLGQHSGGMVICQGQ 529

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            L+ +VP+ R       V Q++ +     G+IK D LGL  + +L   L  + Q   +   
Sbjct: 530  LNSVVPLERASMPGRTVVQWDKEDCADLGIIKVDLLGLGMMAVLHDCLKLIPQHYGEAVD 589

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656
                 +D E Y +L    T+G+FQ+ES     +L    P    D++  V++ RPGPI   
Sbjct: 590  LAQLPEDEEVYRVLQQADTVGMFQIESRAQMASLPRNYPTRFYDLVVQVAIIRPGPIVGK 649

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  Y  R+  +E +   HP ++P+LK T GV ++QEQ+++IA  ++ ++ +EA+ LRRA
Sbjct: 650  MMHPYMRRRQKREPVTYPHPSLEPVLKRTLGVPLFQEQLLRIAMTVANFTGAEAEELRRA 709

Query: 717  M-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            +  ++  E M   +    +G + NGI       I E ++ FA YGF +SHAA++A+I+Y 
Sbjct: 710  VGMRRSWERMKNLEVNLRAGMAANGIDLKTQDTIVENISSFALYGFPESHAASFAMIAYA 769

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR- 834
            +A++K  Y   F  A +  +           +DA++  ++I+P  V        + + R 
Sbjct: 770  SAYLKVRYLAAFTCAILNNQPMGFYAPAVLVKDAQRHGLRILPIDVQISDWPCTIEEERD 829

Query: 835  ----IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                +   L   KG+   +A  ++++   D PF S ED   RV    LNR+ L  L   G
Sbjct: 830  GSLSLRMGLGYAKGLSKQSAEMLVKSRDQDGPFRSAEDLALRVPI--LNRKGLMLLARIG 887

Query: 890  ALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AL+       R   L  +D   K               +         +           
Sbjct: 888  ALNKIDAIEHRRDALWQVDRAGKL-----------EGPLLRQNNEWLQEDSRTLPLQQMT 936

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +  R  ++    G     HP+   +  L+   I   +E      G  +R A  V+++Q+ 
Sbjct: 937  TEERLVSDYAGTGLTVGRHPMYYRRAALQSQRILSAQELKVYKDGEFVRTAGCVIARQRP 996

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T KG    +++  +          P
Sbjct: 997  GTAKG--FIFLSMEDETGIANVIVTP 1020


>gi|311106704|ref|YP_003979557.1| DNA polymerase III subunit alpha 2 [Achromobacter xylosoxidans A8]
 gi|310761393|gb|ADP16842.1| DNA polymerase III, alpha subunit 2 [Achromobacter xylosoxidans A8]
          Length = 1074

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 281/1060 (26%), Positives = 436/1060 (41%), Gaps = 94/1060 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  LQ  S++S L+GA     ++D+ A     A+AITD  +L   +    +A A  + 
Sbjct: 16   PGYAELQCQSNFSFLQGASHPEELIDRAAELGYAALAITDECSLAGVVRAHVEARARKLP 75

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG    +              P      + LL  T EGY  L EL++        K  
Sbjct: 76   LIIGATFQLR-----------AAPDAAPLGLTLLAQTREGYGNLSELITLARTR-APKGE 123

Query: 129  VRICLSWLQEIGT---------EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             R+    L +            E L +L+       DR           ++     ++F 
Sbjct: 124  YRLAPEDLTDPPAGYAHLRHLPECLAILSPAYGTDADRM---------AEQARWLARVFP 174

Query: 180  DRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             R +V L   HR  D    + V Q A   ELPLVA              HD L  +    
Sbjct: 175  HRAWVGLTLLHRSRDDLHRAAVEQAAQAAELPLVALGQVQMHLRSRKPLHDTLTGIRTRQ 234

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
             VSQ     ++ +     R+ M       P+A+  T+ +ARRC+F L       P  I  
Sbjct: 235  PVSQ-CGYELSGNAEQHLRTRMRLANLYPPQAMAQTLAVARRCAFSLDELRYEYPDEIIP 293

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                        LR + +AG   R   G             +++ EL +I  + +  YFL
Sbjct: 294  RG----HTPATYLRQETLAGAARRFPLG------TPDSVTTQIEKELALITDLHYEAYFL 343

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
             V D +Q+A+   I    GRGS A S   Y L IT++DP+R + LFERF++ +R   PD 
Sbjct: 344  TVYDIVQFARGQGIL-CQGRGSAANSAVCYCLGITEVDPVRGNNLFERFISKERNEPPDI 402

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF   RR+EVI+Y+  KYG ER A      S + ++ LRD G AL +    +D + + 
Sbjct: 403  DVDFEHQRREEVIQYIYGKYGRERAALTAVVISYRPRSVLRDTGSALGVDLGVIDAVARA 462

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                      L+ +                     ++Q L G  RH S H  G VI    
Sbjct: 463  HQWWDGKKEMLRTLGAC----GLDPESQVARHWASLAQTLMGFPRHLSQHPGGFVISRGK 518

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-D 597
            LS+LVP+     +D  V Q++   ++  GL+K D L L  L+ L+++L+   QR  +   
Sbjct: 519  LSRLVPIENAAMADRSVVQWDKDDLDALGLLKVDVLALGMLSALRRTLELAGQRRGQPLR 578

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  
Sbjct: 579  LQDIPPDDTPTYDMICDADTIGVFQIESRAQMTMLPRLRPRQYYDLVVQVAIVRPGPIQG 638

Query: 658  IVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V+    R+ GKE        +  +L  T GV I+QEQVMQIA + +G++  E+D LRR
Sbjct: 639  GMVHPYLRRRQGKEPETYPSEKVRGVLSRTMGVPIFQEQVMQIAVVAAGFTPGESDQLRR 698

Query: 716  AMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +M     K  +DK + + + G   +G     A  +F  +  F +YGF +SHAA++A+++Y
Sbjct: 699  SMAAWKRKGGVDKYRTKLVGGLLAHGYKLDFAEALFRQIEGFGEYGFPESHAASFALLAY 758

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831
             ++W+K H P  FLAA +  +        +  QDAR+  + ++PP V     D  +    
Sbjct: 759  ASSWLKRHEPEAFLAALLNSQPMGFYAPAQLVQDARRHGVCVLPPDVTISGWDSALETLP 818

Query: 832  --------------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                                   +   L+ I+G+    AR I +A A  PF    D   R
Sbjct: 819  EGHPGARRTTHPHAPSTDGPRPAVRLGLSLIQGMREDAARRIEDARATAPFADTGDLARR 878

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
                 LNR  L +L    AL      R Q         +    +                
Sbjct: 879  A---ALNRHDLNALAAGDALRTLAGHRRQASWEAAASVQSRDLLRDAA------------ 923

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                 +    + S  +       + R +G     HP+ + +P L     +          
Sbjct: 924  ---IQETQAPQLSAPSEGQTVAADYRSVGLTLHSHPVALLRPQLAARNFQPASVLNGYPD 980

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                R   +V  +Q+ +T KG  + +VT  +         
Sbjct: 981  KRVARACGIVTVRQRPQTAKG--VIFVTLEDETGPVNVVV 1018


>gi|116687247|ref|YP_840493.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424]
 gi|116652962|gb|ABK13600.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424]
          Length = 1049

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 282/1044 (27%), Positives = 464/1044 (44%), Gaps = 77/1044 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A AA + 
Sbjct: 10   PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAANMP 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG    +   D                    L    +GY  L E +S   +  + K +
Sbjct: 70   LIIGSHFRLTAADGSPALA-----------FTALAMNRDGYGNLCEFISLGRMRSK-KGT 117

Query: 129  VRICLSWLQEIGT---------EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             R+    L+   T         + + +L+           F  + Q  + ++  F ++FG
Sbjct: 118  YRLAPLDLEHPETPYTHLRNLPDCIAILSPD---------FPANEQRLDAQVEWFARVFG 168

Query: 180  DRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            DR +V L  H R  D      + ++A  H +P+VAT+  L          DVL  +    
Sbjct: 169  DRAWVALTLHARAMDDIHRGVIERVAARHGVPVVATSWPLMHVRSRKPLQDVLTGIRVGR 228

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
             V  +    + P+     RS +         ALE TV +ARRC+F L       P  +  
Sbjct: 229  PV-TECGYELAPNAERHLRSRLRLANLYPAGALEETVRVARRCTFSLDDLKYEYPDELVP 287

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
               D        LR +   G   R   G         D + +++ EL +IA M +  YFL
Sbjct: 288  AGTD----PATYLREQTYIGARRRFPAG------IPVDVQAQIEHELQLIADMHYEAYFL 337

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
             V D +Q+A++  I    GRGS A S   Y L +T++DP R S+LFERF++ +R S PD 
Sbjct: 338  TVYDIVQFAREQGIL-CQGRGSAANSAVCYCLGVTEVDPSRQSMLFERFISKERNSPPDI 396

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF   +R+ V++Y+  KYG +R A      + + ++ALR+ G+AL +  + V+R+ K 
Sbjct: 397  DVDFEHQKREIVMQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDPAIVERVAKQ 456

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                 +    LQ  A+           P   +    + +L G  RH S H+ G VI    
Sbjct: 457  HHWFDSRADLLQRFAE----AGLDPGAPLNQQWAGFAAQLLGYPRHLSQHSGGFVISRGK 512

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVD 597
            L++LVP+      D  + Q++   IE  G++K D L L  L++++++LD +  +RG   +
Sbjct: 513  LTRLVPVENAAMEDRSIIQWDKDDIEALGILKVDCLALGMLSMVRRALDMISEKRGETFE 572

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  IP +D  TY +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGP+  
Sbjct: 573  LQDIPAEDKATYDMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIVRPGPVQG 632

Query: 658  IVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V+   +  +  E +      ++  L  T GV I+QEQVMQ+A L +G+S  EAD LRR
Sbjct: 633  GMVHPFLRRRQGLEPVTFPSESMEKALARTLGVPIFQEQVMQVAMLAAGFSAGEADQLRR 692

Query: 716  AMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AM     K  ++   ER +SG  + G  +  A +IF  +  F +YGF +SHAA++A++ Y
Sbjct: 693  AMAAWKRKGGLEPYHERLVSGMLERGYDREFAESIFAQIKGFGEYGFPESHAASFALLVY 752

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             +AW++ H P  FLAA +  +        +  QDAR+  ++++P  VN    D  +    
Sbjct: 753  SSAWLRRHEPAVFLAALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWDSTIEGPT 812

Query: 835  ----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                +    + ++G+    A  I  A A +PF  + D   R    +L+R  L+ L  A A
Sbjct: 813  TSAPVRLGFSLLRGMREDVAGRIELARAARPFVDVADLARRA---RLDRHDLQVLARANA 869

Query: 891  LDCF-GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            L    G +R             A            ++    +   +    +      +  
Sbjct: 870  LRSLAGGNRR------------AALWLAAAAVPDRDLLRGTERDDA----VPALPQASEG 913

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 + R +GF    HPL + +  L    ++  E+      G   R   +V  +Q+  T
Sbjct: 914  HEIVTDYRAMGFTLGRHPLALLRDRLALDRLQSAEQLATLRSGQLARACGLVTVRQRPGT 973

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
              G  + ++T  +   +     +P
Sbjct: 974  ANG--VLFMTLEDETGQVNVILWP 995


>gi|308049973|ref|YP_003913539.1| DNA polymerase III, alpha subunit [Ferrimonas balearica DSM 9799]
 gi|307632163|gb|ADN76465.1| DNA polymerase III, alpha subunit [Ferrimonas balearica DSM 9799]
          Length = 1021

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 258/1032 (25%), Positives = 452/1032 (43%), Gaps = 83/1032 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L+  S+YS L+GA   + ++ + A     A+A+TD  +L   ++    A +AG++ I
Sbjct: 8    FAQLRSASNYSFLQGASHPDELVQQAAELGYDALALTDECSLAGVVKAHMAAKSAGLKLI 67

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +  +D                    ++LL     GY  L  L++        K   R
Sbjct: 68   VGSEFVLDQD-----------------RLILLAMNRVGYGELSALITLARRRCD-KGQYR 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
            +    L        ++L   ++              A +R     + F +R+++  +R  
Sbjct: 110  LEWDDLTLPNC---LLLWAPAA-----------PTEALERGRWLARRFAERIFLVAERML 155

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRV 248
            RG +    +    LA   E+P+VA +      +      D L  +    ++     R   
Sbjct: 156  RGGEGEWLTAQEALARQLEVPMVAADPVRMHEKARQPLLDALTCIRLGCSLEQAGGRLAG 215

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + YLK R+ +V        A   ++     C F L       P  +  E         
Sbjct: 216  NAEAYLKPRTRLVQRHRAEWLASTVSLASR--CQFSLDELRYEYPAELVPEGM----SAS 269

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR + + G   R  +         +   ++L+ E  +I  + +  +FL + D +Q+AK
Sbjct: 270  DHLRQETLKGARRRYGE------AVPESVSRQLEQEFALIDELGYHYFFLTIYDIVQFAK 323

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I    GRGS A SV  Y L IT++DP + +LLFERFL+ +R   PD D+DF   RR+
Sbjct: 324  REAIL-HQGRGSAANSVVCYCLGITEVDPTKVNLLFERFLSRERDEPPDIDVDFEHQRRE 382

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  KYG  R A   T  S + K+A+RD+G+ L +    ++R  +           
Sbjct: 383  EVIQYIYRKYGRGRAALAATVISYRFKSAMRDLGKVLGIDEGLIERGLR------GVDRR 436

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              +    ++     L  P    L+ + ++L G  RH S H  G VI   PLS+LVP+   
Sbjct: 437  DPSQPWQAQLAALGLTGPRALLLIRLVEQLLGFPRHLSQHVGGFVISAGPLSELVPVENA 496

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHE 607
              ++  V Q++   +E  GL+K D L L  L+ +++ L  +   RG  + L+ +  DD  
Sbjct: 497  AMAERTVIQWDKDDLEALGLLKVDILALGMLSAIRRCLQSVGQWRGQPMALADVVADDPA 556

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665
             Y +L    ++G+FQ+ES      L  ++P    D++  +++ RPGPI   +V+    R+
Sbjct: 557  VYDMLCRADSVGVFQIESRAQSNMLPRLRPRSYYDLVVQIAIVRPGPIQGDMVHPYLKRR 616

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G E +      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM    +   
Sbjct: 617  HGLEPVSYPSEAVREVLERTLGVPIFQEQVIKLAMVAAGFSGGEADKLRRAMASWKRHGE 676

Query: 726  -DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
             +K + +   G ++ G S   A  IF  +  F +YGF +SH+A++A+++Y +AW+K HYP
Sbjct: 677  LEKFERKLKQGMAERGYSAEFADQIFRQIRGFGEYGFPESHSASFALLAYASAWLKYHYP 736

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----DNRIYYSLA 840
            V F  A +  +        +  QD ++ N Q++P SVN    D +V        +   L 
Sbjct: 737  VAFTCALLNSQPMGFYTPSQLVQDLQRHNGQVLPLSVNHSQWDHQVEAVQGQMALRLGLR 796

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             +KG+       ++    +  F S+      V   +L+R  LE+L  A AL      R Q
Sbjct: 797  LVKGLSRQAVETLLAVRPEGGFSSVHQL---VSLARLDRGALEALASADALAELAGHRHQ 853

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
                L                +   +FA  + T    ++       + +     + +  G
Sbjct: 854  ARWLLAG------------EAQQLPLFAELEPTTDVTLSGP-----DEAEGIVADYQQTG 896

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
                 HPL + +   +        + ++   G  ++LA +VV +Q+  T  G  + ++T 
Sbjct: 897  LSLGRHPLSLLREQGQLARCLTAAQLLSCQHGQLVQLAGLVVGRQRPGTASG--VTFITL 954

Query: 1021 SEPAKEYEANFF 1032
             +         +
Sbjct: 955  EDETGNANVVVW 966


>gi|302335488|ref|YP_003800695.1| DNA polymerase III, alpha subunit [Olsenella uli DSM 7084]
 gi|301319328|gb|ADK67815.1| DNA polymerase III, alpha subunit [Olsenella uli DSM 7084]
          Length = 1302

 Score =  592 bits (1526), Expect = e-166,   Method: Composition-based stats.
 Identities = 327/1050 (31%), Positives = 503/1050 (47%), Gaps = 92/1050 (8%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC+      D ++   + +        ++LL     GY  LI+ +S+    +   
Sbjct: 126  IKPIFGCEAYFITDDCIERGTKQRR-----YHLILLAKNERGYVNLIKCMSQAAGHEMMY 180

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               R  L  L+    EGLI  +    G I +       + A +   TF+ +FGD  Y+ +
Sbjct: 181  YKPRTTLDMLKRYH-EGLICQSACVQGIIQQRVIEGDVEGARQWARTFQDVFGDDFYMEI 239

Query: 187  QRHRG------YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            Q H         DR  +  ++++A    + +V TN+  +L+ ED    D+L  +  +T +
Sbjct: 240  QDHGLEFPNGWNDRKLDEYLIKIADELGVKVVCTNDIHYLTREDASTQDILSCIGKATTI 299

Query: 241  SQKDRPRVTPDHYLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                R R+    +     E +   FS  P+A +NT+E+A +C + L  ++  LP F    
Sbjct: 300  DDNSRMRMEGTEFYMKSEEEMRQLFSWYPQACDNTLEVADKCDYELDWNSMYLPEFP--- 356

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 +  E   R +   GL  R  +G         + R R + E  +I    F+ YFLI
Sbjct: 357  GLRKGETAEERFREECERGLAKRYGEGWRDLEIGGWNVRDRFEHEYKIITEKGFANYFLI 416

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D++QWAK N I VGPGRGS AG++ AYA+ IT+ DPL   L+FERFL+P R  MPD D
Sbjct: 417  VQDYVQWAKDNGIGVGPGRGSAAGAIVAYAMNITNFDPLENGLMFERFLSPQRSEMPDID 476

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  +    V+++V++ YG +RV ++IT+ +++AK A+ D  R L  P     RL K++
Sbjct: 477  MDFDDEHLQMVLQHVRDVYGEDRVCKVITYSTIKAKQAINDANRVLGFPVYMGQRLSKML 536

Query: 480  PNDPAHPVSLQAIADD-------SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
             NDP   +      ++         F EA   D    R+++ +  +EG  R    HA   
Sbjct: 537  SNDPKLTLPNALHKNEKKPDQYSPDFEEAYNKDADAHRIIDAALSIEGFMRGEGVHACAT 596

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
            +I   P++  VP   D + ++ +TQ+    +   GL+K DFLGL+TLT++ K+L+ + + 
Sbjct: 597  LIAPTPVTDHVPTKLDTKGNVTITQYEGHSVADMGLLKMDFLGLRTLTVINKALENIRRS 656

Query: 592  ----------------------RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
                                    V +D+    F D   Y LL +  T G+FQ+ES+GM 
Sbjct: 657  YPDLSRADELPEQVRSAIKPGATCVDLDVDKCDFSDPAIYELLGSGHTAGVFQVESAGMT 716

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQG 687
              ++GMQP   + I+AL++LYRPGP+   +V  Y NR NGKE +V     +  +L ET G
Sbjct: 717  ATIKGMQPTEYKHIVALIALYRPGPLGAGMVTSYINRMNGKEPVVFYDDRLSDILDETYG 776

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRR--------AMGKKIKEEM------DKQKERFI 733
             ++YQEQVMQI+  +S +S  E+D   R         M              +   + ++
Sbjct: 777  TMVYQEQVMQISMKMSNFSPGESDGRIRKPVAKKKIKMLTSQVFHWEGDGADETIYDHWM 836

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +GA  NG  + +A  I++ + +FA Y FNKSH+A YA++  QTAW+K+H+P EF+A+ +T
Sbjct: 837  NGALGNGYQRDVAQRIWDDVLEFASYAFNKSHSAGYAILVMQTAWLKSHFPREFMASVLT 896

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
              M   +KI  +    R+  I ++PP VN    DF      + +  A I+GVG      I
Sbjct: 897  SYMGKTDKIVHYVTSCRREGIDVLPPDVNESGKDFTATPQGVRFGFAGIRGVGDGVGEAI 956

Query: 854  MEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN----- 907
            M    A  PF SL DFC RVD  + NRRV+E+L+ +GA D  GY R QL+  +D      
Sbjct: 957  MAEREARGPFKSLHDFCERVDGSQANRRVVEALIKSGAFDSTGYPRKQLMGFVDKNDPAN 1016

Query: 908  IQKYAQWVEKNRTNKHENIFAH----EKGTFSDKITLEKF-SVENSSVRFENEQRVLGFY 962
            I   A   +K++ N   ++F          F D I         + + +   E  VLG Y
Sbjct: 1017 IIDAAAKRQKDKANGQVSMFDMFADVAGAGFEDDIPEPNPHDEWDRNTKLAQEHEVLGIY 1076

Query: 963  FSGHPLDVYKPILRKMGIKGYEESV-----------------ATIRGNNIRLAAM--VVS 1003
             S HPL  Y+  + K       E                       G  IRLA M  V  
Sbjct: 1077 VSDHPLRPYEYAISKARDYTLSEIEESEEVVDPVSGAATTRYKVPEGKPIRLAGMVPVGG 1136

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +K T+KG ++  VT  +   E     FP
Sbjct: 1137 VVKKVTKKGDQMAIVTLEDMEGEVTLVVFP 1166



 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 31/57 (54%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
          +FVHL  HS +S+L+GA  + +++ +    + PA+A+TD   LF       +  +  
Sbjct: 2  AFVHLHNHSDFSILDGATPVESLVKRAVDLKMPAVALTDHGYLFGVPNLDLECRSYN 58


>gi|118616689|ref|YP_905021.1| error-prone DNA polymerase [Mycobacterium ulcerans Agy99]
 gi|118568799|gb|ABL03550.1| DNA polymerase III, alpha chain, DnaE2 [Mycobacterium ulcerans Agy99]
          Length = 1088

 Score =  592 bits (1526), Expect = e-166,   Method: Composition-based stats.
 Identities = 279/1038 (26%), Positives = 488/1038 (47%), Gaps = 59/1038 (5%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S ++  L  HS+YS L+GA +   ++++ A     A+A+TD N L+ A+ F++ A   G
Sbjct: 48   SSIAYAELHAHSAYSFLDGASTPEELVEEAARLDLRALALTDHNGLYGAVRFAEAASGLG 107

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ + G +L +  +       + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 108  VRTVFGAELSLGPE------ARTEQPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 161

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
               R     L E       +LTG   G + +A        AE+ L      F   R+ V 
Sbjct: 162  GKPRYDFDSLTEAAGGHWHILTGCRKGHVRQALRQGGPDAAERVLADLVDRFTAGRVSVE 221

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L  H    D    + +  LA    + +VAT  + F           + A+     +    
Sbjct: 222  LTHHGHPLDDENNAMLAGLAPRFGVGVVATTGAHFAHPARSRLAMAMGAIRARQSLDSAA 281

Query: 245  RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     +L++ +EM  +F+  P+ +    E+  +C+F L + AP LP F   +    
Sbjct: 282  GWLAPLGGSHLRSGAEMARLFAQRPDVVTAAAELGEQCAFGLALIAPRLPPFDVPDG--- 338

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E++ LR+  ++G   R   G+  +   A+    +++ EL VIA++ F GYFL+V D 
Sbjct: 339  -HTEDSWLRSLVMSGARERY--GSTERSPRARKAYAQIEHELKVIAQLSFPGYFLVVHDI 395

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
             Q+ ++N+I    GRGS A S   YAL +T +DP+   LLFERFL+P+R   PD DID  
Sbjct: 396  TQFCRRNDIL-CQGRGSAANSAVCYALGVTAVDPIANELLFERFLSPERDGPPDIDIDIE 454

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+R++VI+YV NKYG +  AQ+    + + ++A+RD+ RAL     Q D   K I +  
Sbjct: 455  SDQREKVIQYVYNKYGRDYAAQVANVITYRGRSAVRDMARALGFSQGQQDAWSKQIGHWN 514

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            A    ++ I +               ++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 515  ATLDDVEGIPE---------------QVIDLAAQIRNLPRHMGIHSGGMVICDRPIADVC 559

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+     +D  V Q++       GL+KFD LGL  L+ L  + D +A+   ++VDL+ + 
Sbjct: 560  PVEWARMADRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYARDLVAEHKGIEVDLARLD 619

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660
              +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  
Sbjct: 620  LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 679

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R++G + +V  HP ++  L++T GV ++QEQ+MQ+A   +G+S +EAD LRRA+  K
Sbjct: 680  YIRRRSGIDPVVYEHPSMESALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAIGSK 739

Query: 720  KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            +  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A + + ++W
Sbjct: 740  RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSSW 799

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836
             K H+P  F AA +  +       +    DAR+  + +  P VN       +     ++ 
Sbjct: 800  FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVLVHGPDVNASLAHATLENAGMQVR 859

Query: 837  YSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L A++ +G   A  ++     + PF SL +  SRV   +L+    E+L   GAL CFG
Sbjct: 860  LGLGAVRHIGDDLAESLVAERNDNGPFASLLNLTSRV---QLSVPQTEALATTGALGCFG 916

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             SR +                   T + + +      +      +      +      ++
Sbjct: 917  MSRRE----------ALWAAGAAATQRPDRLPGVGSSS-----HIPTLPGMSELELAASD 961

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     +P    +  L  +G+      ++   G  + +A  V  +Q+  T +G  +
Sbjct: 962  VWATGISPDSYPTQFLRADLDALGVLAAAALLSVPDGERVLIAGAVTHRQRPATAQG--V 1019

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             ++   +          P
Sbjct: 1020 TFINLEDETGMVNVLCTP 1037


>gi|254482564|ref|ZP_05095803.1| DNA polymerase III, alpha subunit subfamily, putative [marine gamma
            proteobacterium HTCC2148]
 gi|214037255|gb|EEB77923.1| DNA polymerase III, alpha subunit subfamily, putative [marine gamma
            proteobacterium HTCC2148]
          Length = 1031

 Score =  592 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 266/1039 (25%), Positives = 451/1039 (43%), Gaps = 74/1039 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     +  L   S YS L  A   + ++++ A     A+AITD  +L   ++    A  
Sbjct: 1    MSN---YSELHCLSCYSFLRSASHPHELVERAAQLGYGALAITDECSLAGVVKAHVAAKE 57

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG++ IIG +  ++                    +V L  +   Y  L  L+S       
Sbjct: 58   AGLKLIIGSEFKLE----------------EGIRLVALAPSRAAYSELSGLISMARRRS- 100

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K   R  L  +       L++               ++    +       +L  +R+++
Sbjct: 101  PKGEYRANLRDVIFHLKRCLLI-----------WLPRDNDDHDKAYGQQLARLCKNRIWL 149

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +    G D  R       LA    +PLVA  +           HDV  A+ ++T V+Q 
Sbjct: 150  GVSHLLGNDEARHFENTSALATALNIPLVACGDVRMHLASRKPLHDVFTALHYNTSVAQL 209

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R R+        RS         PE +  T  I  RC+F L       P  +  +    
Sbjct: 210  GRRRLGNS-QQHLRSLERIHQLYPPELILETERIVSRCNFSLDELRYEYPEEVVPQG--- 265

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                 + LR     G + R   G        +  +QR+D EL +I  + +  YFL V D 
Sbjct: 266  -HSANSYLRQLVDEGSKRRWPTG------TPEPVQQRIDRELELIDELNYEYYFLTVYDI 318

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +A+  +I    GRGS A SV  Y L IT++ P + SLLFERF++ +R   PD D+DF 
Sbjct: 319  VDFARSRDIL-CQGRGSAANSVVCYCLGITEVSPEQISLLFERFISKERDEPPDIDVDFE 377

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EVI+Y+  KY   R A   T  + ++++A+RDVG+AL +    VD L K +    
Sbjct: 378  HERREEVIQYIYRKYSRRRAALAATLITYRSRSAVRDVGKALGLDPVFVDDLAKSLAWWD 437

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                  +   +    +         D    + Q++ G  RH S H  G VI   P+S LV
Sbjct: 438  RTADLSKRFEE----QGVAGHSQQADLFYNLVQQILGFPRHLSQHVGGFVITRSPISTLV 493

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIP 602
            P+     ++  V Q++ + IE  GL+K D L L  L+ ++KSL  + +       +S IP
Sbjct: 494  PVENASMAERTVIQWDKEDIESLGLLKVDILALGMLSAIRKSLQMVHRYNPAIATVSDIP 553

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D  TY +L    T G+FQ+ES      L  ++P+C  D++  +++ RPGPI   +V+ 
Sbjct: 554  KEDAATYQMLQQADTTGVFQIESRAQMSMLPRLKPECFYDLVIQIAIVRPGPIQGDMVHP 613

Query: 663  --NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
               RK G E I      I  +L+ T GV I+QEQV+++A + +G+S  EAD LRRA+   
Sbjct: 614  YLRRKQGLEVITYPSEEIKGVLERTLGVPIFQEQVIRLAMVAAGFSGGEADQLRRAIANW 673

Query: 721  IKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
             +       +++   G  + G  +  A  +F+ +  FA YGF +SH+A++A+++Y ++W+
Sbjct: 674  GRNSKLLGFEQKLTQGMIERGYDEDFARRLFDQIKGFAGYGFPESHSASFALLAYISSWL 733

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----- 834
            K H+P  F A  +  +        +  QDAR+  +  +P  VN    D ++ D       
Sbjct: 734  KRHHPAAFFAGLLNSQPMGFYSASQLLQDARRHGVVALPIDVNQSDWDHQLLDQHRGTNK 793

Query: 835  -IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +   L  +KG+    A+ ++E     PF  + D   R    +L++R +E+L  A AL  
Sbjct: 794  PVRLGLRLVKGLSRGGAQRVVEGRQQSPFRQISDLRRRA---QLDKRDMEALADADALVS 850

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                R Q    +  +++    ++  +              F+DK+ L   +V   +    
Sbjct: 851  LSGHRHQSQWQIMALEEARPLLQDEQFQN--------AHYFNDKVQLPAPAV---AEEVL 899

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            ++ R  G     HPL + +        K   +         +R+A +V  +Q+  +  G 
Sbjct: 900  SDYRATGLTLRAHPLSLLRDQAPFNRCKKQVDLPHLGNHRFVRIAGLVTCRQRPGSASG- 958

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + ++T  +         +
Sbjct: 959  -VLFLTLEDETGNSNVVVW 976


>gi|148243808|ref|YP_001220047.1| DNA polymerase III, alpha subunit [Acidiphilium cryptum JF-5]
 gi|146400371|gb|ABQ28905.1| error-prone DNA polymerase, DnaE-like [Acidiphilium cryptum JF-5]
          Length = 1082

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 280/1048 (26%), Positives = 456/1048 (43%), Gaps = 79/1048 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +    ++V L   S +S L GA S + +  + A     A+AITD N L   +     A A
Sbjct: 1    MSTDTAYVELHCTSHFSFLRGASSCDELFAQAAHLGLEALAITDRNTLAGIVRAHVAAKA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              ++ I+GC+LD+                     +++  +    Y RL  L+S       
Sbjct: 61   NDMRLIVGCRLDLTDGTA----------------LLVYPTDRPAYARLSRLLSLGKQRGG 104

Query: 125  GKQSVRICLSWLQEIGTEGLI-MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             K   R+  S L     EGLI +L  G +                + L    + FGDR Y
Sbjct: 105  -KAQCRLDWSDLVAY-AEGLIGVLVPGEA-----------DDACVRNLRRLAQSFGDRAY 151

Query: 184  VNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L  R R  D  R  ++  LA   ++P V TN+ LF + +     DV+  + H   +  
Sbjct: 152  LALTLRRRPNDALRLFELSNLAARAKVPTVVTNDVLFHARDRRILQDVVTCIRHGCTIDD 211

Query: 243  -KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
               R     D YLK  +EM  +FS  PEAL  T EIA RC F L       P        
Sbjct: 212  AGFRRERHADRYLKPPAEMHRLFSRYPEALARTQEIADRCLFSLDELRYQYPDENVLPG- 270

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                  +  L      G   R   G  A      +    L  EL +I  + ++ YFL V 
Sbjct: 271  ---LTTQEALTQLTWEGAAQRYPAGVPA------EVVTILRHELRLIETLDYAPYFLTVN 321

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
              +++A+   I    GRGS A S   + L IT IDP R  LLFERF++ +R   PD D+D
Sbjct: 322  SIVRFARSQGIL-CQGRGSAANSAVCFVLGITSIDPERNDLLFERFISEERREPPDIDVD 380

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+ V+++V + YG +  A   T    + K ALRDVG+AL +P   +  L   +  
Sbjct: 381  FEHERREIVMQWVFDTYGRDHAALCSTVIRYRTKGALRDVGKALGLPEDLITALNAQVWG 440

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +  +  A+        L D  +   ++++++L G  RH S H  G V+    L +
Sbjct: 441  WSEGGIEPKHAAE----LHLNLEDRRLKLAIDLARELIGTPRHLSQHPGGFVLTRDRLDE 496

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSL 600
            LVP+      +  + +++   I+    +K D L L  L+ +++  D LAQ      DL+ 
Sbjct: 497  LVPIEPAAMDNRQIIEWDKDDIDALKFMKVDCLALGMLSCMKRGFDLLAQHKGIELDLAT 556

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D  TY ++    TLG FQ+ES      L  M+P    D++  V++ RPGPI   +V
Sbjct: 557  IPAEDPHTYAMIRRADTLGTFQIESRAQMVMLPRMKPRTFYDLVIEVAIVRPGPIQGDMV 616

Query: 661  YN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
            +    R+ GKE +V   P ++ +L +T GV ++QEQ M++A   +G++ +EAD LRR+M 
Sbjct: 617  HPYLRRREGKEAVVYPKPELEKVLGKTLGVPLFQEQAMRVAIECAGFTATEADQLRRSMA 676

Query: 719  KKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
                   +   +++ +SG   NG  +  A   F  L  F  YGF +SHAA++A+I+Y ++
Sbjct: 677  TFKFTGGVSHFRDKLVSGMVANGYEQEFAERTFSQLEGFGSYGFPESHAASFALIAYASS 736

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN---- 833
            W+K H+P  F AA +  +        +  +DA+   ++I P  VN    D  +       
Sbjct: 737  WLKCHHPDVFCAALLNAQPMGFYAPAQIVRDAKDHGVEIRPVCVNASRWDCTLEPTHDES 796

Query: 834  --RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               +   L  +KGV       ++ A A+  F S++D   R     +    L  +  A A 
Sbjct: 797  RLAVRLGLRMVKGVANPHVAKMIAARANHLFASVDDLWRRA---GVPTAALVQMAEADAF 853

Query: 892  -DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
                  +R   L ++  ++  A             +FA         ++  +  V     
Sbjct: 854  LPSLKLARRDALWAIKALRDEA-----------LPLFAAVANRTEQPVSELQEPVFALKP 902

Query: 951  -----RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                     +   LG     HP+   +  LR+  I   ++ ++T  G  +  A +V+ +Q
Sbjct: 903  LTGGGEVVEDYVHLGLSLRSHPVAYLREDLRRERIVSCDQVMSTRDGKFLETAGIVLVRQ 962

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  + +G  + ++T  +         +P
Sbjct: 963  RPGSARG--VMFITIEDETGIANLVIWP 988


>gi|332041001|gb|EGI77369.1| DNA polymerase III, alpha subunit [Hylemonella gracilis ATCC 19624]
          Length = 1083

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 270/1056 (25%), Positives = 447/1056 (42%), Gaps = 83/1056 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S++S   GA S   ++ +  A    A+AITD  ++   +    +A   G+ 
Sbjct: 24   PAYAELHCLSNFSFQRGASSAEELVARAHALGYSALAITDECSMAGVVRAHVEAQKLGLS 83

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY-------- 120
             +IG +L +++ D             T  ++VLL  +  GY +L EL+++          
Sbjct: 84   LLIGTELRVNVDD------------QTHFTLVLLARSRVGYGQLCELITQARGHTVTARE 131

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 +   R+    L+    E L +L     G    A     +   + +L   +  F  
Sbjct: 132  RERGLRYQQRMDGWPLELDRHELLALLVPQRDGLQPEA--PGFAARLDAQLQWLRARFAP 189

Query: 181  RLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              ++ ++  H   D     ++        +PLVA               DV+ A+     
Sbjct: 190  HGWLAVELLHGLDDERWLRELQAAGARCGVPLVAAGGVHMHVRSRKPLQDVMTAIRLGRP 249

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            V  +    + P+     RS            L  TV +A  C F L       P  +   
Sbjct: 250  V-AECGFELQPNAEAHLRSRQRLAALYPAALLAETVRLAGLCHFSLDELKYEYPEEVVPA 308

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +       + LR   + G + R  QG           R++++ EL +I+ +++  YFL 
Sbjct: 309  GE----TPASYLRRATLEGAQTRYPQGV------PTAVRRQIEHELALISELRYEKYFLT 358

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D ++ A+   I    GRGS A SV  Y L +T++DP R S+LFERF++ +R   PD D
Sbjct: 359  VYDIVRHARDEKIL-CQGRGSAANSVVCYCLGVTEVDPARTSVLFERFISKERNEPPDID 417

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF   RR+EVI+Y+  KYG  R A      +  A+ A+RDVG+AL +    +D L K  
Sbjct: 418  VDFEHQRREEVIQYLYTKYGRGRAALTAAVHTYHARGAIRDVGKALGLDEDLIDALAKAH 477

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                   V+ + +   S       + P    L    + L G  RH S H+ G V+    L
Sbjct: 478  QWWDGREVNRERL---SALGVEVDSRPIRLLLELT-RPLLGFPRHLSQHSGGFVLTGDKL 533

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
            ++ VP+           +++   I+  GL+K D L L  L+ ++++LDF++Q RG    L
Sbjct: 534  TRTVPVVPAAMEGRTTIEWDKDDIDALGLLKVDVLALGMLSAIRRTLDFVSQWRGRPFRL 593

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP +D +TY ++     +G+FQ+ES      L  ++P C  D++  V++ RPGPI   
Sbjct: 594  QDIPPEDPQTYEMICRADVVGVFQIESRAQMSMLPRLRPRCFYDLVIEVAIVRPGPIQGG 653

Query: 659  VVYNNRKNGKEKIV-----SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            +V+   +  + +         +  + P L  T GV I+QEQVMQIA + +G++  EAD L
Sbjct: 654  MVHPFLEQRERQRRGEPLALPNEALRPALARTLGVPIFQEQVMQIAIIAAGFTPGEADQL 713

Query: 714  RRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM     K  +DK ++R I G +  G  +  A  IF  +  F +YGF +SHAA++A++
Sbjct: 714  RRAMAAWRRKGGVDKFQQRLIEGMTARGYEREFAEAIFRQIEGFGEYGFPESHAASFALL 773

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK--- 829
             Y +AW+K H P  FLA  +           +  QDA++  + + P  V     D     
Sbjct: 774  VYSSAWLKRHEPAAFLAGLLNSLPMGFYGPSQLVQDAQRHCVTVRPVDVLHSEWDCTLER 833

Query: 830  -------------VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
                              +   L  + G+    A  I+ A A  P  + ED   R     
Sbjct: 834  EEGYEGDEGEHRPATRAAVRLGLRLVAGLKQERAHRIVAARAQGPLLNTEDLALRAGLDA 893

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            L+   L +L  A AL      R Q +     +      +                G    
Sbjct: 894  LD---LNALASADALMGLSGHRRQQVWDASALHAAPALLR---------------GAPVH 935

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            + TL              +   LG     HPL + +P L ++G++  ++ +A   G   R
Sbjct: 936  EPTL-ALPAAPEGEEIVFDYAALGLTLRRHPLALLRPRLSRLGVQTAQDLLAWPDGRPAR 994

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +V+++QQ  T KG  + +VT  +     +   +
Sbjct: 995  ACGLVLARQQPGTAKG--VVFVTLEDETGSVQVIVW 1028


>gi|295676323|ref|YP_003604847.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1002]
 gi|295436166|gb|ADG15336.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1002]
          Length = 1049

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 265/1038 (25%), Positives = 449/1038 (43%), Gaps = 64/1038 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S+++ L GA     +  + A     A+AITD  +L   +     A  A + 
Sbjct: 9    PAYAELFCFSNFTFLRGASHAEELAQRAAQLGYSALAITDECSLAGVVRAHVAAKEAKLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G    +   D                 ++LL     GY  L EL++   +    K  
Sbjct: 69   FIVGSYFRLVNADG-----------SPAFGLILLARNRNGYGNLSELITLARMR-APKGE 116

Query: 129  VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L     E   L+ +    +  +    F  S    + ++    + F  R +V L
Sbjct: 117  YRLTPQDLSRPEKEYRHLLGMPDCLAILVPD--FPASEDALDAQVEWLDETFTGRAWVGL 174

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              H R  D      V  +A + ++P+VA    +          D + A+     V  +  
Sbjct: 175  VLHQRAMDDMHRGAVEFVAKSRDVPVVALGEVVMHVRSRKPLQDTMTAIRVGKPV-HECG 233

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     RS +        +AL  TV+I  RC+F L       P  +         
Sbjct: 234  YDLAPNAEQHLRSRLRLANLYPEDALAATVDIMSRCTFSLDELRYEYPDELVPAG----H 289

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR +   G + R   G           +Q+++ EL +IA +++  YFL V D ++
Sbjct: 290  TPASYLRQETYIGAQRRFPAG------IPHHVQQQIEHELELIADLQYEPYFLTVYDIVR 343

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I    GRGS A S   Y L +T++DP R ++LFERF++ +R   PD D+DF   
Sbjct: 344  FARSQHIL-CQGRGSAANSAVCYCLGVTEVDPARGNMLFERFISKERGEPPDIDVDFEHQ 402

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG +R A      + + + ALR+ G+AL +    VD + K        
Sbjct: 403  RREEVIQYIYRKYGRDRAAIAAAVSTYRPRGALRETGKALGVDPQIVDAVAKSHHWFDTS 462

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               L   A+           P +    +++ +L    RH S H+ G VI    L++LVP+
Sbjct: 463  RDLLARFAES----GLDPDKPLIQAWAKLASQLLNFPRHLSQHSGGFVISRGKLTRLVPV 518

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFD 604
                 +D  V +++   +E  GL+K D L L  L+ ++++LD    QRG + ++  IP +
Sbjct: 519  ENAAMADRSVIEWDKDDLESLGLLKVDVLALGMLSAIRRTLDLVSEQRGERFEMQDIPSE 578

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY +++   T+G+FQ+ES      L  M+P    D++  V++ RPGPI    V+   
Sbjct: 579  DPATYAMISAADTVGVFQIESRAQMSMLPRMRPRTFYDLVIEVAIVRPGPIQGGAVHPYL 638

Query: 665  KNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721
            +  +  E +      +   L  T GV I+QEQVMQ+A L +G++  EAD LRRAM     
Sbjct: 639  QRRQGFEPVTYPSDALKTALGRTLGVPIFQEQVMQVAILAAGFTAGEADQLRRAMAAWKR 698

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K  ++K  +R + G  + G  +  A  IFE +  F +YGF +SHAA++A++ Y ++W+K 
Sbjct: 699  KGGLEKYYDRIVLGMQERGYDQAFAEAIFEQIKGFGEYGFPESHAASFALLVYASSWLKC 758

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------NRI 835
            H P  FLAA +  +        +  QDA++  + ++P  V     +  +          +
Sbjct: 759  HEPEAFLAAMLNSQPMGFYSPSQLVQDAQRHGVTVLPVDVTVSGWNSSLEPRAGAMRPAV 818

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L+ ++G+    A  I  A A +PF S+ D   R    +L+R+ L +L  A AL    
Sbjct: 819  RLGLSLLRGMKDGAAERIENARAVRPFASVNDLARRA---QLDRKDLHALADANALAALA 875

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R + L    ++               +                 +    + +     +
Sbjct: 876  GNRREALWQ--SVVAVPDKDMLAAAATQD--------------ETPELGAPSEAHDIVAD 919

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
             R LG   + HPL++ +P L    +           G   R   +V  +Q+  T KG  +
Sbjct: 920  YRSLGLTLNRHPLELLRPQLLANRLMPASTLRTYRHGRLARGCGLVTVRQRPGTAKG--V 977

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +VT  +         +P
Sbjct: 978  VFVTLEDETGNVNVIIWP 995


>gi|92119219|ref|YP_578948.1| DNA polymerase III, alpha subunit [Nitrobacter hamburgensis X14]
 gi|91802113|gb|ABE64488.1| error-prone DNA polymerase, DnaE-like protein [Nitrobacter
            hamburgensis X14]
          Length = 1087

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 280/1039 (26%), Positives = 460/1039 (44%), Gaps = 68/1039 (6%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +  +  LQV S +S L GA S   +    A+    A+AI D N+L   +   + A   G+
Sbjct: 2    TSRYAELQVTSHFSFLRGASSCEELFAHAASLGIEALAIVDHNSLAGIVRAHEAAKVTGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+GC+LD+                    S+++  +    Y RL  L+S        K 
Sbjct: 62   RLIVGCRLDLADGM----------------SVLVYPTDRPAYSRLCRLLSIGKTRGG-KA 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA-EKRLLTFKKLFGDRLYVNL 186
               +    + +  +EGLI            A   + +  A  +R+   +  FGDR ++ L
Sbjct: 105  KCILNWEDVVDW-SEGLIA-----------ALVPDVADDACAQRIRRLRDTFGDRAHMAL 152

Query: 187  Q-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKD 244
              R R  D+ R  ++  +A    +  V TN+ LF         DV+  + H+ T+     
Sbjct: 153  TLRRRPNDQMRIHELNNMAQRFRVATVVTNDVLFHEPARRILQDVVTCIRHNVTIDEAGF 212

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R     D YLK   EM  +F+  PEAL  TV IA RC+F +   A   P           
Sbjct: 213  RRERHADRYLKPPDEMTRLFARYPEALARTVAIAGRCTFSMDELAYQYPEERTMPG---- 268

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +  L      G   R  +G         + R  L+ EL +I R++++ YFL V   +
Sbjct: 269  LTPQQALEKLTWEGAAERYPEGL------PDEVRPTLEHELRLIERLQYAPYFLTVNSIV 322

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+  +I    GRGS A S   Y L IT IDP R  LLFERF++ +R   PD D+DF  
Sbjct: 323  RFARSRDIL-CQGRGSAANSAVCYVLGITSIDPERNDLLFERFVSEERREPPDIDVDFEH 381

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+ V+++V   YG    A   T    +AK ALRDVG+AL +    +  L   I     
Sbjct: 382  ERREIVMQWVFETYGRNHAALCSTVIRYRAKGALRDVGKALGLTEDLIKLLSSQIWGWSE 441

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              V  +   +        L D  +   + ++++L G  RH S H  G V+    L +LVP
Sbjct: 442  EGVEPKHAEE----LNLNLDDRRLKLAIVLARELIGTPRHLSQHPGGFVLTHDRLDELVP 497

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPF 603
            +      +  V +++   I+    +K D L L  LT ++++       +G ++DL+ IP 
Sbjct: 498  IEPAAMPNRQVIEWDKDDIDALKFMKVDCLALGMLTCMKRAFNFLAEAKGTELDLATIPS 557

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662
            +D  TY ++    TLG FQ+ES      L  M+P    D++  V++ RPGPI   +V+  
Sbjct: 558  EDPRTYAMIRKADTLGTFQIESRAQMAMLPRMKPRTFYDLVIEVAIVRPGPIQGDMVHPY 617

Query: 663  -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R+ GKE +V   P ++ +L +T GV ++QEQ M++A   +G++  EAD LRRAM    
Sbjct: 618  LRRREGKEPVVFPKPELEKVLGKTLGVPLFQEQAMRVAIECAGFTPGEADQLRRAMATFK 677

Query: 722  KE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                + K K++ I+G    G  +  A   F  L  F  YGF +SHAA++A+I+Y ++WMK
Sbjct: 678  FTGGVSKFKDKLINGMVDRGYDREFAEKTFSQLEGFGSYGFPESHAASFALIAYASSWMK 737

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRI 835
              +P  F AA +  +        +  +DAR   +++ P  +N    D  +         +
Sbjct: 738  CWHPDVFCAALLNAQPMGFYAPAQIVRDARDHGVEVRPVCINASRWDCTLEPINDDGFAV 797

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CF 894
                  I+G+       I+ A AD+PF+S++D   R D   +    L  L  A A++   
Sbjct: 798  RLGFRLIRGLSNKNGAEIVAARADQPFESVDDLWRRAD---IPVASLVQLAKADAMNESL 854

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            G +R + L +L  ++     +    T +        +     +       +  S      
Sbjct: 855  GLARREALWALKALRDEPLELFAAATQR------EARTIEEVREPAVSLRLMTSGGEVVE 908

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            + R +G     HP    +  L    I    +++    G  +  A +V+ +Q+  + KG  
Sbjct: 909  DYRHVGLTLRQHPASFLRADLSSRRIVTCADAMNACDGKWLTTAGLVLVRQKPGSAKG-- 966

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + ++T  +         +P
Sbjct: 967  VMFITIEDETGVANLVIWP 985


>gi|162148659|ref|YP_001603120.1| putative DNA polymerase III alpha subunit [Gluconacetobacter
            diazotrophicus PAl 5]
 gi|161787236|emb|CAP56829.1| putative DNA polymerase III alpha subunit [Gluconacetobacter
            diazotrophicus PAl 5]
          Length = 1055

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 279/1044 (26%), Positives = 467/1044 (44%), Gaps = 75/1044 (7%)

Query: 5    LE-KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +   +P +  LQV S +S L G  S   +  +  A    A+ ITD N+L   ++    A 
Sbjct: 1    MSGSAPRYAELQVTSYFSFLRGVSSPGELFGQAKALGISALGITDRNSLAGMVQAHLAAR 60

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            A+G++ I+GC+LD++                  P +++  +    Y  L  L++      
Sbjct: 61   ASGVRLIVGCRLDLED----------------APPVLVYPTDRAAYGNLCRLLTLGKAR- 103

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             GK   R+    L   G EGL+ +               + +     L   +  FGDR Y
Sbjct: 104  AGKGKCRLLWRDLVAWG-EGLLAV----------LVSDVADEECAAHLRRLRDAFGDRAY 152

Query: 184  VNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + L  R R  D+ R  ++V LA+   +  V TN+ LF + +     DV+  V H+T +  
Sbjct: 153  MALTLRRRPNDQIRLYELVNLAHAQRVKTVVTNDVLFHTHDRRILQDVVTCVRHNTTIEH 212

Query: 243  KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                R    D YLK  +EM  +F+  PEA++ T+EI  RC F L   A         E +
Sbjct: 213  AGFARERHADRYLKPPAEMARLFARYPEAIDRTMEIVARCRFSLDDLAY----QYPDEIE 268

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               +  +  L                   G    D    L  EL +I RM+++ YFL V 
Sbjct: 269  IPGQTPQQALEALTWQAARETYG------GIIPPDVEMVLRHELALIGRMEYAPYFLTVH 322

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
              ++ AK+ +I    GRGS A S   + L IT IDP R +LLFERF++ +R   PD D+D
Sbjct: 323  SIVREAKRRDIL-CQGRGSAANSAVCFVLGITAIDPSRTTLLFERFISEERGEPPDIDVD 381

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F   RR+E+I++V + YG +R A        +AK ALRDVG+ + +P   +  L + I  
Sbjct: 382  FEHARREEIIQWVYDHYGRDRAALTAVVIRYRAKGALRDVGKVMGLPEDVIALLSRQIWG 441

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
               H    +         + R+        L++++ L G+ RH S H  G V+    L +
Sbjct: 442  WSHHVDPEKFAGTGIDLTDRRIRLT-----LDLARCLIGVPRHLSQHPGGFVLTRDRLDE 496

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
            LVP+      D  + +++   I+    +K D L L  LT ++K LD LA        L  
Sbjct: 497  LVPIEPAAMEDRQIIEWDKDDIDALKFMKVDILALGMLTCMKKGLDLLAAHKGQHFTLQT 556

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V
Sbjct: 557  VPAEDPRTYAMIRKADTIGVFQIESRAQMSMLPRLKPRTYYDLVIEVAIVRPGPIQGDMV 616

Query: 661  YN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
            +    R+ G E+     P ++ +LK T GV ++QEQVMQ+A + + ++ +EAD LRRAM 
Sbjct: 617  HPYLRRREGLEEPDYPTPELEEVLKRTLGVPLFQEQVMQVAMVCADFTAAEADGLRRAMA 676

Query: 719  KK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
                   +   + R + G ++ G  +  A  I++ L  F  YGF +SHAA++A+++Y ++
Sbjct: 677  TFKNTGTVSHFQTRLLEGMTRKGYPEEFAQRIYQQLEGFGSYGFPESHAASFAILAYTSS 736

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN---- 833
            W+K H+P  FLAA +  +        +  +DAR+  +++ P  +N    D  +       
Sbjct: 737  WLKCHHPDVFLAALLNSQPMGFYAPAQLVRDAREHGVEVRPVCINASRWDSTLEGEDDDR 796

Query: 834  ---RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                +   ++ +KG+    A  +  A   +PF S++D   R     + +  L  L  A A
Sbjct: 797  GCFAVRVGMSLVKGLANAHAAALAAARLRRPFASIDDLWRRA---GVPQEALVRLAEADA 853

Query: 891  LD-CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
                FG +R + L ++  +                 +FA    +   +      +     
Sbjct: 854  FRPAFGLARREALWAIKGLHDE-----------PLPLFAAAAQSRETEEPAMALAPMTDG 902

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 +   LG    GHP+   +  LR+  I     ++A   G  +  A +V+ +Q+  +
Sbjct: 903  AEVVGDYNHLGLSLRGHPVSFLREDLRQRRIVPCGTAMALRDGKRVEAAGLVLVRQRPGS 962

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
              G  + ++T  +         +P
Sbjct: 963  --GEGVCFITLEDETGIANLVIWP 984


>gi|296136343|ref|YP_003643585.1| DNA polymerase III, alpha subunit [Thiomonas intermedia K12]
 gi|295796465|gb|ADG31255.1| DNA polymerase III, alpha subunit [Thiomonas intermedia K12]
          Length = 1037

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 270/1037 (26%), Positives = 459/1037 (44%), Gaps = 64/1037 (6%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++  P +V L   S++S L GA     ++++        +A+TD  +L   +     A A
Sbjct: 1    MDPLPDYVELHCRSNFSFLTGASHPEELVERAHELHYAGLALTDECSLAGIVRAHGAAKA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+  ++G Q  ++  +  +             ++V+L     GY  L E ++R+     
Sbjct: 61   AGLPLLVGVQFAVEGDEKTRTPP---------FTLVVLACNLNGYGNLCEFITRLRRAS- 110

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K S R+    +        ++L   S           +     +        F  R+++
Sbjct: 111  PKGSYRLDRQSITGETLADCVVLAVPS--------RQATDAGLLELGAWLLARFTGRVWL 162

Query: 185  NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             ++ HR  D  R   ++  LA    +PLVA  +            D L A+     ++  
Sbjct: 163  AVELHRRLDDERWLERLQDLAEATAIPLVAAGDVHMHRRSRKPLQDTLTAIRLGRPIADC 222

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                         RS +    +   E L  T+ +A RC F L       P+ +    +  
Sbjct: 223  GHALQPNA-ERHLRSRLRLALTYPAELLAETLRVAARCRFSLDELRYRYPKEVIPAGE-- 279

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                +  LR +   G   R   G  A        +  L+ EL +IA + ++ YFL V D 
Sbjct: 280  --TADGYLRRRVYEGAGRRWPDGLHA------KVQDLLEHELALIAELGYAHYFLTVDDI 331

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +A+  +I    GRGS A S   YAL IT++DP +  +LFERF++ +R   PD D+DF 
Sbjct: 332  VAFARSRHIL-CQGRGSAANSAVCYALGITEVDPEQQQVLFERFISKERNEPPDIDVDFE 390

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EVI+Y+  KYG +R A        + K+ALRDVG+AL      VDRL + +    
Sbjct: 391  HERREEVIQYLYAKYGRDRAALTAAVIRYRPKSALRDVGKALGFDLETVDRLARNVHWWD 450

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               V+ + + +             V + + + ++L G  RH S H  G V+ + PLS+LV
Sbjct: 451  GREVARERLEEV----GLDPDALGVQQWMALVRQLLGFPRHLSQHTGGFVLTEGPLSRLV 506

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP 602
            P+      +  V +++   ++ AGL+K D L L  LT ++K+LD + Q  G    +  IP
Sbjct: 507  PIENASMPERTVIEWDKDDLDAAGLLKVDILALGMLTAIRKALDAIGQSLGQTFAMQDIP 566

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D +TY +L    ++G+FQ+ES   +  L  +QP C  D++   ++ RPGPI   +V+ 
Sbjct: 567  REDPQTYDMLCQADSVGVFQVESRAQQGMLPRLQPRCFYDLVIETAIVRPGPIQGGMVHP 626

Query: 663  NRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
                 + K  +V     ++ +L+ T GV ++QEQVMQIA + +G+S  EAD LRRAM   
Sbjct: 627  YLNRRQGKEVVVYPSKDLESVLQRTLGVPVFQEQVMQIAMVAAGFSAGEADGLRRAMAAW 686

Query: 721  IKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
             +    +K ++R I+G ++ G S   A +I+E +  F++YGF +SHAA++A++ Y +AW+
Sbjct: 687  RRTGSLEKYRDRLIAGMTERGYSADFAQSIYEQVQGFSEYGFPESHAASFALLVYASAWI 746

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----NRI 835
            K H+P EFL A +  +        +  QDA++  + + P  V     D  + +      +
Sbjct: 747  KRHHPAEFLMALLNSQPMGFYTPSQLVQDAKRHGVTVRPVDVLHSDWDCTLEEAVPYPAV 806

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L  +KG+G      I  A   +P    ED   R    +L+   L  L  A AL    
Sbjct: 807  RLGLRLVKGLGREAGLRIAAARMSRPPVDAEDLAKRA---QLDTMALRQLAAADALRSLS 863

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R Q +     +++                   +     D + L              +
Sbjct: 864  GHRRQQVWEATAVER-------------MPALLDDAAPQEDWLELPAPPE---GEDIVFD 907

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     HPL + +P+L K  ++   E      G  +R   +V  +QQ +T KG+  
Sbjct: 908  YATTGLSLRRHPLALLRPLLAKRRLQTAAELAQAPDGRIVRACGIVTLRQQPETAKGT-- 965

Query: 1016 GWVTFSEPAKEYEANFF 1032
             +V+  +     +   +
Sbjct: 966  TFVSLEDETGTVQVICW 982


>gi|301385165|ref|ZP_07233583.1| error-prone DNA polymerase [Pseudomonas syringae pv. tomato Max13]
          Length = 1031

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 264/1037 (25%), Positives = 446/1037 (43%), Gaps = 80/1037 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S   GA S   + D+       A+AITD   L   +   Q +   G+  I
Sbjct: 5    YAELHCLSNFSFQRGASSARELFDRALRHGYAALAITDECTLAGIVRAWQASKDTGLPLI 64

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ ++                  P IVLLV    GYQ L  L++      + K   R
Sbjct: 65   VGSEMHLENG----------------PKIVLLVEHLTGYQALCTLITVARRRAK-KGEYR 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L     +    L +      G         +           ++ F +RL++ ++ HR
Sbjct: 108  LLLEDFDHLPGGLLAIWLADIEGDAQACLAQGN---------WLRERFAERLWLGVELHR 158

Query: 191  G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQKDRPRV 248
            G  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V         
Sbjct: 159  GADDEQRLADLLALAQSLAIPAVASGDVHMHARGRRALQDTITAIRHHTTVAEAGHLLFA 218

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + +L++   +   + D   A   ++ IARRC+F         P  +  +     +   
Sbjct: 219  NGERHLRSLDALAEHYPDWLLA--ESLRIARRCTFTFDQLHYEYPHELVPKG----QTST 272

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR     G+  R  +G           R +++ EL +I   KF  YFL V D +++A+
Sbjct: 273  SWLRELTERGIRRRWPRGLGVAA------RAQVEKELALITEKKFDSYFLTVHDIVEFAR 326

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              +I    GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  DRR+
Sbjct: 327  SQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERDEPPDIDVDFEHDRRE 385

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  +YG  R A      +     ALRDV + L +P  Q++ L            S
Sbjct: 386  EVIQYIFRRYGRGRAALTAVASTYHGSGALRDVAKVLGLPPDQINALADAFSRWSDSLPS 445

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             + + +           P + R+L ++ +L G  RH S H  G VI + PL  LVP+   
Sbjct: 446  PERLREY----GFDAETPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLDTLVPVENA 501

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607
              ++  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +P DD  
Sbjct: 502  AMAERTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKQWTLASLPGDDRP 561

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665
            TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V+    R+
Sbjct: 562  TYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLRRR 621

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N +E I    P +  + + T GV ++QEQVM++A + + Y+  EAD LRRAM    +   
Sbjct: 622  NNEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEADQLRRAMAAWKRHGG 680

Query: 726  -DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
             D  +ER  +G   NG     A  IFE +  F  YGF +SHAA++A+++Y + W+K H P
Sbjct: 681  LDPHRERLRTGMLANGYDADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEP 740

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------DNRI 835
              F  A +           +  QDAR+ +I+I    V     D  +          +  I
Sbjct: 741  AAFTCALINSWPMGFYSPDQLLQDARRHHIEIRSVDVRYSHWDCTLEPLDHPDSTRNLAI 800

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L  ++      A  I  A + +PF    D   R     L+ R  E+L  +GAL    
Sbjct: 801  RLGLRMLRSFREEDALRIEAARSKRPFADATDLAQRA---GLDSRAAEALADSGALRGLI 857

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R +    +  +                 +F                 +   +     +
Sbjct: 858  GHRHRARWEVAGV------------EAQRPLFDDVTSEEVQ----VTLPLPTVAEDLVAD 901

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
               LG     HPL + +  L     +  ++ +A      + +A +V+ +Q+  T  G  +
Sbjct: 902  YATLGTTLGPHPLALLRRQLAAKRFRSSQDLLALENNRTLSVAGLVIGRQRPGTASG--V 959

Query: 1016 GWVTFSEPAKEYEANFF 1032
             +VT  +         +
Sbjct: 960  TFVTLEDEFGMVNVVVW 976


>gi|206479930|ref|YP_002235441.1| putative DNA polymerase subunit alpha [Burkholderia cenocepacia
            J2315]
 gi|195945086|emb|CAR57711.1| putative DNA polymerase alpha subunit [Burkholderia cenocepacia
            J2315]
          Length = 1049

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 282/1037 (27%), Positives = 462/1037 (44%), Gaps = 63/1037 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A +A + 
Sbjct: 10   PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKSANMP 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG    +   D                    L    +GY  L E +S   +  + K S
Sbjct: 70   LIIGSHFQLTAADGSSALA-----------FTALAMNRDGYGNLCEFISLGRMRGK-KGS 117

Query: 129  VRICLSWLQ--EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    +   E     L  L    +  I    F  + Q  + ++  F ++FGDR ++ L
Sbjct: 118  YRLAPLDVDHPEAPYAHLRGLPDCLA--ILSPDFPANEQRLDAQVEWFARVFGDRAWIAL 175

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              H R  D      + ++A  H +P+VAT+  L          DVL  +     V  +  
Sbjct: 176  TLHARAMDDIHRGVLERVAARHGVPVVATSWPLMHVRSRKPLQDVLTGIRVGRPV-TECG 234

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     RS +         ALE TV +ARRC+F L       P  +     D   
Sbjct: 235  YELAPNAERHLRSRLRLANLYPAGALEETVRVARRCTFSLDDLKYEYPDELVPAGTD--- 291

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 LR +   G   R   G         D + +++ EL +IA M +  YFL V D +Q
Sbjct: 292  -PATYLREQTYIGARRRFPAG------IPVDVQAQIEHELQLIADMHYEAYFLTVYDIVQ 344

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A++  I    GRGS A S   Y L +T++DP R S+LFERF++ +R S PD D+DF   
Sbjct: 345  FAREQGIL-CQGRGSAANSAVCYCLGVTEVDPSRQSMLFERFISKERNSPPDIDVDFEHQ 403

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            +R+ V++Y+  KYG +R A      + + ++ALR+ G+AL +  + V+R+ K      + 
Sbjct: 404  KREIVMQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDTAIVERVAKQHHWFDSR 463

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               LQ  A+           P   +    + +L G  RH S H+ G VI    L++LVP+
Sbjct: 464  ADLLQRFAE----AGLDPEAPLNQQWAAFAAQLLGYPRHLSQHSGGFVISRGKLTRLVPV 519

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604
                  D  + Q++   IE  G++K D L L  L++++++LD +  +RG   +L  IP  
Sbjct: 520  ENAAMEDRSIIQWDKDDIEALGILKIDVLALGMLSMVRRALDMISEKRGETFELQDIPAQ 579

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGP+   +V+   
Sbjct: 580  DKATYDMLCEGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIVRPGPVQGGMVHPFL 639

Query: 665  KNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721
            +  +  E +      ++  L  T GV I+QEQVMQ+A L +G+S  EAD LRRAM     
Sbjct: 640  RRRQGLEPVTFPSEGMEKALARTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKR 699

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K  ++   ER +SG  + G  +  A +IF  +  F +YGF +SHAA++A++ Y +AW++ 
Sbjct: 700  KGGLEPYHERLVSGMLERGYDREFAESIFAQIKGFGEYGFPESHAASFALLVYSSAWLRR 759

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYY 837
            H P  FLAA +  +        +  QDAR+  ++++P  VN    D  +  +     +  
Sbjct: 760  HEPAVFLAALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWDSAIEGSTTSAPVRL 819

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GY 896
              + ++G+    A  I  A A +PF  + D   R    +L+R  L+ L  A AL    G 
Sbjct: 820  GFSLLRGMREDVAGRIELARAARPFVDVADLARRA---QLDRHDLQVLARANALRSLAGG 876

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R             A            ++    +   +    +      +       + 
Sbjct: 877  NRR------------AALWLAAAAVPDRDLLRGTERDDA----VPALPQASEGHEIVTDY 920

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            R +GF    HPL + +  L    ++  E+      G   R   +V  +Q+  T  G  + 
Sbjct: 921  RAMGFTLGRHPLALLRDRLALDRLQSAEQLATLRSGQLARACGLVTVRQRPGTANG--VL 978

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++T  +   +     +P
Sbjct: 979  FMTLEDETGQVNVILWP 995


>gi|317405112|gb|EFV85458.1| error-prone DNA polymerase [Achromobacter xylosoxidans C54]
          Length = 1075

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 276/1053 (26%), Positives = 434/1053 (41%), Gaps = 78/1053 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  LQ  S++S L+GA     +  + A     A+AITD  +L   +    +A    + 
Sbjct: 19   PGYAELQCQSNFSFLQGASHPEELAARAAELGYAALAITDECSLAGVVRAHMEAKTQKLP 78

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG    +              P      + LL  T EGY  L EL++        K  
Sbjct: 79   LIIGATFRLRAG-----------PEAAPLDLTLLAQTREGYGNLSELITLARTR-APKGE 126

Query: 129  VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+            E L  L    +  I    + +      ++       F  R +V L
Sbjct: 127  YRLAPEDFTAPPPGYEHLRHLPECLA--ILSPVYGDDPDRMAQQARWLAATFPRRAWVGL 184

Query: 187  Q-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
               +R  D    + V   A   ELP+VA              HD L  +     VSQ   
Sbjct: 185  TLLYRSRDDLHRAAVDHAARAAELPVVALGQVQMHVRSRKPLHDTLTGIRTHQCVSQ-CG 243

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              ++ +     R+ M       PEAL  T+ +ARRC+F L       P  I         
Sbjct: 244  YALSGNAEQHLRTRMRLANLYPPEALAQTLVVARRCAFSLDELRYEYPDEIIPRG----H 299

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 LR + +AG   R   G            ++++ EL +IA + +  YFL V D + 
Sbjct: 300  TPATYLRQETLAGAARRFPDG------TPDYVSEQIEKELALIADLHYEAYFLTVYDIVL 353

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+ N I    GRGS A SV  Y L IT++DP R + LFERF++ +R   PD D+DF   
Sbjct: 354  YARNNGIL-CQGRGSAANSVVCYCLGITEVDPRRGNNLFERFISKERNEPPDIDVDFEHQ 412

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR++VI+Y+  KYG +R A      S + ++ LRD GRAL +    +D + +        
Sbjct: 413  RREDVIQYIYRKYGRQRAALTAVVISYRPRSVLRDTGRALGVDPGVIDAVARAHQWWDGK 472

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               L+ +                 +   ++Q L G  RH S H  G VI    LS+LVP+
Sbjct: 473  KEMLRTLGAC----GLDPESQVARQWAALAQTLMGFPRHLSQHPGGFVISRGKLSRLVPI 528

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFD 604
                 +D  V Q++   ++   L+K D L L  L+ L+++L+   QR  +   L  IP  
Sbjct: 529  ENAAMADRSVVQWDKDDLDALNLLKVDVLALGMLSALRRTLELAGQRRGQPLRLQDIPEG 588

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662
            D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+   
Sbjct: 589  DDPTYDMICDADTIGVFQIESRAQMTMLPRLRPRKYYDLVVQVAIVRPGPIQGGMVHPYL 648

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721
             R+ GKE I      +  +L  T GV I+QEQVMQIA + +G+S  EAD LRR+M     
Sbjct: 649  RRRQGKEDIDYPSDKVKGVLSRTMGVPIFQEQVMQIAVVAAGFSPGEADQLRRSMAAWKR 708

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K  +DK + + + G   +  +   A  +F  +  F +YGF +SHAA++A+++Y ++W+K 
Sbjct: 709  KGGVDKYRAKLVGGLLAHNYTLEFAEALFRQIEGFGEYGFPESHAASFALLAYASSWLKR 768

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------- 831
            H P  FLAA +  +        +  QDAR+  ++++P  V     D  +           
Sbjct: 769  HEPEAFLAALLNSQPMGFYAPAQLVQDARRHGVRVLPVDVTVSGWDAALETPPADAPPRR 828

Query: 832  -----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                          +   L+ I+G+   +AR I  A A+ PF S  D   R     L R 
Sbjct: 829  SHPHAPSPDETRPAVRLGLSLIQGLHEDSARRIEAARAEAPFTSTGDLARRA---ALTRH 885

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             L +L    AL      R Q              +     +               +   
Sbjct: 886  DLNALAAGDALRTLAGHRRQASWEAAASVHSRDLLRDAAIH---------------ETEA 930

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
             + +    +     + R +G     HP+++ +P L     +              R   +
Sbjct: 931  PRLAAPTENQTVAADYRSVGLTLRRHPVELLRPQLAARNFQPASALNGYPDKRVARACGI 990

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V  +Q+ +T KG  + +VT  +          P
Sbjct: 991  VTVRQRPQTSKG--VIFVTLEDETGPVNVVVRP 1021


>gi|319787762|ref|YP_004147237.1| DNA polymerase III subunit alpha [Pseudoxanthomonas suwonensis 11-1]
 gi|317466274|gb|ADV28006.1| DNA polymerase III, alpha subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 1095

 Score =  589 bits (1518), Expect = e-165,   Method: Composition-based stats.
 Identities = 274/1047 (26%), Positives = 461/1047 (44%), Gaps = 79/1047 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S  ++  + A     A+AITD  +L   +   + + A G++
Sbjct: 52   PAYAELHCLSEFSFLRGASSAEDLFARAAQCGYEALAITDECSLAGIVRAWEASRATGVK 111

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G +  +D                     VLLV +  GY RL ELV+        K S
Sbjct: 112  LVVGSEFALDCGLRC----------------VLLVQSRLGYTRLCELVTTGRRNSA-KGS 154

Query: 129  VRICLSWLQE------IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             R+  + ++        G EG +  TG   G              E R L    +FGD  
Sbjct: 155  YRLSRADVERVVRAPPPGEEGGMAGTGEDCGLFALWLPGAEPDPVEGRWLRL--VFGDDA 212

Query: 183  YVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ ++ HR  D   R +Q+ +LA   ++  VA  +            D L A+ H+    
Sbjct: 213  YLAVELHREQDDAARLAQLQELAARLQMTAVAAGDVHMDVRRRRVLQDTLTAIRHNLT-I 271

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             +   R+  +     R+            L+  VE+ARRC+F L+  A  +     KE  
Sbjct: 272  AECADRLFRNGERHLRTRRALAAIHPAPLLQAAVELARRCNFDLRKEARYV---YPKELV 328

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                   + LR     G+  R  +G             +++ EL +IA +K+  +FL V 
Sbjct: 329  PEGHTPSSWLRQLTEEGMRERWPEGV------PPRVAAQIEEELALIAELKYEAFFLTVE 382

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D +++A+  +I    GRGS A S   +AL IT +DP +  LL  RFL+  R   PD D+D
Sbjct: 383  DIVRFARGKDIL-CQGRGSSANSAVCFALGITAVDPAQTRLLVSRFLSRARNEPPDIDVD 441

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+EV++YV +KYG  R A   T    + K+A+RDV +A  +P  Q+  L +    
Sbjct: 442  FEHERREEVLQYVYSKYGRRRAALAATVIRYRGKSAVRDVAKAFGLPPDQIGLLAECFGW 501

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                    Q +++          +P ++++L ++  LE + RH S H  G VI D PLS 
Sbjct: 502  GNGAAPMRQRLSE----AGFDPDNPLINKVLALAAMLEDMPRHLSQHVGGFVISDAPLST 557

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSL 600
            +VP+     +D  + Q++   +E  G++K D L L  LT ++K+ D +   RGV++D++ 
Sbjct: 558  VVPVENAAMADRTIIQWDKDDLETMGMLKVDCLALGMLTCIRKAFDLVEGYRGVRLDMAT 617

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P +D  TY +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI   +V
Sbjct: 618  LPREDAATYEMLQAADSVGVFQVESRAQMAMLPRLRPKRFYDLVVQVAIVRPGPIQGGMV 677

Query: 661  YN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
            +    R+ GKE +      +  +L  T G+ ++QEQVM++  + +GYS  EAD LRR+M 
Sbjct: 678  HPYLRRRMGKEPVTYPSEGVREILGNTLGIPLFQEQVMELV-IHAGYSPEEADHLRRSMA 736

Query: 719  KKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
               +  +M+  + R      +   S      +FE +  F  YGF +SHAA++A + Y +A
Sbjct: 737  AWGRGGDMEPHRLRIRQLMEEKRYSSEFIDQLFEQIKGFGSYGFPQSHAASFAKLVYVSA 796

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR-----QFNIQIMPPSVNTPCVDFKVG- 831
            W+K H P  F  A +  +        +  QDAR     + ++ + P  +     D  +  
Sbjct: 797  WLKRHEPAAFACALINSQPMGFYSPSQIVQDARRGRGDRESVDVRPVDITCSTWDCTLEP 856

Query: 832  -----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                    I   L  + G+    A+ I++A   + F  + D C R    +L+ +  ++L 
Sbjct: 857  VGQGKQPAIRLGLRLVAGLSEAAAQAIVDARRWRVFSDVADLCRRA---RLDAKARQALA 913

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AGALD     R     ++  I                 +          ++   +    
Sbjct: 914  EAGALDGLAGHRNAARWAVAGI------------EPKRPLLDTSPDETRIELPAPRL--- 958

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                    + R  G     HP+ + +  L +  I G  E      G+ + +A +V  +Q+
Sbjct: 959  --GEELLADYRSTGLSLRAHPMALLRAQLVQRRILGVRELQQRRHGSGVHVAGLVTQRQR 1016

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              T KG+   +VT  +         +P
Sbjct: 1017 PATAKGT--IFVTLEDEHGMVNVIVWP 1041


>gi|300789271|ref|YP_003769562.1| DNA polymerase III subunit alpha [Amycolatopsis mediterranei U32]
 gi|299798785|gb|ADJ49160.1| DNA polymerase III subunit alpha [Amycolatopsis mediterranei U32]
          Length = 1109

 Score =  589 bits (1517), Expect = e-165,   Method: Composition-based stats.
 Identities = 268/1037 (25%), Positives = 439/1037 (42%), Gaps = 58/1037 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L VHS++S L+GA     ++++ A  +  A+ +TD + ++ A+ F+  A   G++  
Sbjct: 65   YAELHVHSNFSFLDGASHPETLVEEAARLELDALVLTDHDGMYGAVRFNDAARELGVRVG 124

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L + +        Q   P P    ++++     GY RL  ++SR  L    K    
Sbjct: 125  FGAELSLGLP-----APQAGAPDPAGSHLLVIARQQTGYHRLCRVISRAQLAGGEKGRPV 179

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 L E     +++LTG   G + RA        A   L      FG   + V L  H
Sbjct: 180  YDFDELAEELAGHVVVLTGCRKGAVRRALAERGPAAARAELARLVDRFGRSHVAVELIDH 239

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            R   D      +  LA    LP V + N  +   ED    D + AV         +  R 
Sbjct: 240  RLPRDDAANDLLAALAKDLRLPTVVSGNVHYARPEDAVVADAVAAVRARRSAEDLEGWRP 299

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                             +                    +   ++   +         +E 
Sbjct: 300  PSGQAFLRSGMEQRRRFERRYPGAVGRAAVLGVEVAFDL--NLVAPDLPPFPVPAGHDEM 357

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L      G   R       +  H + Y  +LD EL VI ++ F GYFL+V D +++ +
Sbjct: 358  SFLIELTRQGAAKRYG----PRDEHPKAY-AQLDHELAVIEKLGFPGYFLVVWDIVRFCR 412

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I    GRGS A S   YAL I   DP++++LLFERFL P+R   PD D+D    RR+
Sbjct: 413  EAGIL-CQGRGSAANSAVCYALEICHADPVKWNLLFERFLAPERDGPPDIDVDIESGRRE 471

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E I+YV  K+G    AQ+    + +A +A+RD  +AL     Q D   KL+        +
Sbjct: 472  EAIQYVYEKHGRFHAAQVANVITYRAPSAIRDAAKALGHSPGQQDAYGKLVDRWGGVAAT 531

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             Q                  D +L+++ ++E   RH   H+ G+V+  +P+S++VP+   
Sbjct: 532  KQQ-----------ATGAIPDDVLDLAARIEDFPRHLGIHSGGMVLSKQPVSEVVPVEWA 580

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
               D  V Q++       GL+KFD LGL  L+ L   +D +A+     VD+  +   D  
Sbjct: 581  TMKDRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHHMIDLVAEHHGSTVDIGKLDLADPA 640

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRK 665
             Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y  R+
Sbjct: 641  VYDMLCAADAVGVFQVESRAQLATLPRLRPRKFYDLVVEVALIRPGPIQGGSVHPYIRRR 700

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEE 724
             G E+    HPL+   L  T GV ++QEQVMQ+A  ++ ++ +EAD LRRAM  K+   +
Sbjct: 701  RGDEEWEHAHPLLAASLDRTLGVPLFQEQVMQMAVDVASFTAAEADQLRRAMGAKRSSAK 760

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M     RF +G + NG+ + +A  IFE +  F+ YGF ++H+ ++A++ Y +AW K +YP
Sbjct: 761  MRALMARFFAGCAANGLDRELATRIFEQIHAFSGYGFPEAHSMSFALLVYASAWFKRYYP 820

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-------RIYY 837
              F A  +  +       +    DAR+  + I  P +N       + ++        +  
Sbjct: 821  AAFCAGLLRAQPMGFYSPQSLVADARRHGVHIREPDINASLAGATLEEDAGSTGGVALRL 880

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             LAA++ +G   A  I+    A  P+  + D  SRV  K   + V E+L  AGA   FG 
Sbjct: 881  GLAAVRHLGDDVADLIVAERDAHGPYTDIGDLTSRVPLK---KNVAEALATAGAFSSFGG 937

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R Q L                   +  ++     G     +                + 
Sbjct: 938  DRRQDLW----------AAGAAAATRPGHLPGLAPG-----LDAPALPGMTRLEVTAADL 982

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
               G    GHP++  + +L + G     E + T  G  + +   V  +Q+  T  G  I 
Sbjct: 983  WATGVSPDGHPVEYLRELLDRRGAITVAELMRTEDGTRVWVGGAVTHRQRPATAGG--IT 1040

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++   +          P
Sbjct: 1041 FLNLEDETGMANVLVSP 1057


>gi|307943857|ref|ZP_07659201.1| error-prone DNA polymerase [Roseibium sp. TrichSKD4]
 gi|307773487|gb|EFO32704.1| error-prone DNA polymerase [Roseibium sp. TrichSKD4]
          Length = 1135

 Score =  589 bits (1517), Expect = e-165,   Method: Composition-based stats.
 Identities = 262/1053 (24%), Positives = 447/1053 (42%), Gaps = 80/1053 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              F  L   S++S L GA     +  + A     A+AI D N++   +     A  AG++
Sbjct: 19   SGFAELCAASNFSFLHGASHPEELAMRAADLGLKALAICDRNSVAGVVRAHMAAKEAGLR 78

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             + GC+L                     P +++     +GY RL  L++      + K  
Sbjct: 79   FVPGCRLGF---------------LDGTPDLLVWPKHRQGYGRLSRLLTIGNRRAE-KGC 122

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +    L  +    +  L      P        S       L   K + G  L + +  
Sbjct: 123  CHLLPDDLTHLDQGSVTALVLPPGLP--------SPDEMIADLQGLKAVLGSDLRLAVSL 174

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             +G  DR R    V+LA   ++ L+ATN+ L+   E     DVL  +     +    R  
Sbjct: 175  SKGPADRRRLDLAVRLAQLSDVKLLATNDVLYHVLERRPLQDVLTCIRLHERLETAGRQL 234

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + YLK+  +M  +F    +AL  ++ I    SF L   A   P   E   D     
Sbjct: 235  EANAERYLKDAEDMARLFDGAEDALYESLRILEELSFSLDDLAYEYPE--EPCGDSA--S 290

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + EL   A  G + R   G            + ++ EL ++A + ++ YFL V D +++
Sbjct: 291  PQAELERLAEEGAKRRYPNGV------PDKVTKAINHELKLVAELDYAPYFLTVYDIVRF 344

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I    GRGS A SV  + L IT++DP R  LLFERF++P+R   PD D+DF  +R
Sbjct: 345  ARSRGIL-CQGRGSAANSVVCFCLGITEVDPARADLLFERFISPERRESPDIDVDFEHER 403

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG ER     T  + + ++ALR+VG+   +    +  L   I    +  
Sbjct: 404  REEVIQYIYEKYGRERSGLAATVITYRTRSALREVGKVFGLSEDAIGALSGTIWGHSSSE 463

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             S   + +          DP + +++E+   L G  RH S H  G VI    L ++VP+ 
Sbjct: 464  ASEGQVVE----AGMDPKDPMLGQMMELVDTLIGFPRHLSQHVGGFVITKGRLDEVVPIQ 519

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDD 605
                 D  V +++   ++  G++K D L L  L+ ++K+L       G    ++ IP ++
Sbjct: 520  NAAMEDRTVIEWDKDDLDALGILKIDILALGMLSAIRKALDMLSENYGCDYTVATIPPEE 579

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
             E Y +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    
Sbjct: 580  PEVYDMLCRADSIGVFQVESRAQMTMLPRLKPQAFYDLVIEVAIVRPGPIQGDMVHPYLR 639

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R+ G EK+      ++ +L +T GV ++QEQ M+IA + +G++  EAD LRRAM    + 
Sbjct: 640  RRQGLEKVTYPSRELEEVLGKTMGVPLFQEQAMKIAIVAAGFTPGEADRLRRAMATFRRV 699

Query: 724  -EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              +   + + I G +KNG  +  A   F  +  F +YGF +SHAA++A++ Y ++W+K  
Sbjct: 700  GTIGTFQTKMIEGMAKNGYDRDFAERCFRQIEGFGEYGFPESHAASFALLVYASSWIKAR 759

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----------- 831
            YP  F AA +  +        +  +DAR+  +++    +N    D  +            
Sbjct: 760  YPDVFCAALLNSQPMGFYAPAQLVRDAREHGVEVREVDINMSDWDAGLEPGNCAADRLHR 819

Query: 832  -----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                       +  +     +IKGV       ++    +  +DS+ D   R     L R 
Sbjct: 820  KHADMRGTIQSNKAVRLGFRSIKGVRQDDMEILVAMRGEG-YDSVRDLWLRT---GLGRP 875

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
            V+  L  A A    G  R   L +       AQ +E+ +      +F             
Sbjct: 876  VIMRLAEADAFRSLGLDRRTALWA-------AQGLERGKVQDRLPLFDTADAGDLRPEPN 928

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                          + + L      HP+   +P L++  +    E      G ++ +A +
Sbjct: 929  ADLPSMPPGAHVMADYQTLSLSLKAHPVAFARPALQRQRVVPCMELDRLRSGCHVTVAGL 988

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V+ +Q+  + KG  + +VT  +         +P
Sbjct: 989  VLVRQRPGSAKG--VIFVTLEDEGGIANVIVWP 1019


>gi|262201696|ref|YP_003272904.1| DNA polymerase III subunit alpha [Gordonia bronchialis DSM 43247]
 gi|262085043|gb|ACY21011.1| DNA polymerase III, alpha subunit [Gordonia bronchialis DSM 43247]
          Length = 1090

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 279/1037 (26%), Positives = 464/1037 (44%), Gaps = 72/1037 (6%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              S  +  L  HS+YS L+GA     ++ +       A++ITD +  +  + F++ A   
Sbjct: 62   PSSVPYAELHAHSAYSFLDGASMPEEMVTEAQRLDLRALSITDHDGFYGIVRFAEAAREF 121

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G+  + G +L +          +     P    +++L   +EGY+RL   ++  +++   
Sbjct: 122  GMPTVFGSELSLAHD-----VARTGHNDPPGEHLLVLARDSEGYRRLSRTIADAHMVAGE 176

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184
            K  +R     L        ++LTG   G + RA     +  AE  L      FG D + V
Sbjct: 177  KGLLRYERESLSSAAGGHWLILTGCRKGAVRRALDRGGASAAEVALRDLVDRFGRDDVAV 236

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQ 242
             L       D  R + +  +A    +  VAT  + F           + AV   T + + 
Sbjct: 237  ELTASGLPDDDDRNAALAGVARLVGVATVATTGAHFAGPRRRRLAMAMAAVRARTDIDTI 296

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                      +L +  EM  +     +A++N V++A  C+F L + AP LP F   +   
Sbjct: 297  AGWMPGVAGAHLCSGDEMARLLPAHRDAIDNAVQLAADCAFELGLIAPQLPPFDVPDG-- 354

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                E   LR   +     R          H Q YRQ ++ EL ++  + F GYFL+VAD
Sbjct: 355  --HTEITWLRELTMTRARRRYG----TPAQHPQAYRQ-IEHELAIVETLNFPGYFLVVAD 407

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             + + K N+I    GRGS A S   YAL IT++DP+   LLFERFL+P+R   PD D+D 
Sbjct: 408  IVDFCKANDIL-CQGRGSAANSAVCYALGITNVDPVANKLLFERFLSPERDGPPDIDVDI 466

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              DRR+E I+YV  +YG +  AQ+    + + ++A+RD+ RAL     Q D   +L    
Sbjct: 467  ESDRREEAIQYVYRRYGRDYSAQVANVITYRGRSAVRDMARALGYGTGQQDAWSRLPDEA 526

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            P                +              + ++ G+ RH   H+ G+VI DRP++ +
Sbjct: 527  P------------PEVADL-------------AGEILGMPRHLGIHSGGMVICDRPIADV 561

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLI 601
             P       +  V Q++       GL+KFD LGL  L+ L  ++D +A+     VDL+ +
Sbjct: 562  CPTEWARMENRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAIDLVAEHKGLHVDLAEL 621

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIV 659
               +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++ 
Sbjct: 622  DLSEPAVYEMLCRADSVGVFQVESRAQMATLPRLRPRKFYDLVVEVALIRPGPIQGGSVH 681

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-G 718
             Y  R++G+EK    HP +   L+ T GV ++QEQ+MQ+A  ++G+  + AD LRRAM  
Sbjct: 682  PYIRRRHGQEKPTVEHPSMHKALERTLGVPLFQEQLMQLAVDVAGFDAAGADQLRRAMGS 741

Query: 719  KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            K+  E M++ ++RF  G    +GI+  +A  IFE ++ FA++GF +SH+ ++A + + ++
Sbjct: 742  KRSPERMERLRQRFYDGMRDLHGITGEVADRIFEKMSAFANFGFPESHSQSFASLVFYSS 801

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--RI 835
            W K H+P  F AA +  +       +    DAR+  +++  P +N       + +    +
Sbjct: 802  WFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVRVHRPDINVSLPHATLENEGLEV 861

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
               L  ++GVGT  A  I+E   AD P+  + D   R     L  R LE L  AGA D F
Sbjct: 862  RLGLDGVRGVGTEVAERIVERRDADGPYRDITDVSRRA---GLTTRELEGLAGAGAFDVF 918

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            G SR Q L                  +    +        +   T       +       
Sbjct: 919  GVSRRQALWEAGAA--------ATVRDDQLPL--------ASAATTPTLPGLSDVELAAT 962

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +    G   + +P    +P LR MG+   E  ++   G+ + +   V  +Q+  T  G  
Sbjct: 963  DAWATGITPTSYPTQFLRPRLRAMGVLAAETLLSVPDGSRVVVGGAVTHRQRPATASG-- 1020

Query: 1015 IGWVTFSEPAKEYEANF 1031
            + ++   +         
Sbjct: 1021 VTFINLEDETGMVNVVC 1037


>gi|319935864|ref|ZP_08010290.1| hypothetical protein HMPREF9488_01121 [Coprobacillus sp. 29_1]
 gi|319809131|gb|EFW05612.1| hypothetical protein HMPREF9488_01121 [Coprobacillus sp. 29_1]
          Length = 1018

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 330/1027 (32%), Positives = 543/1027 (52%), Gaps = 55/1027 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HLQV S+YS     + + +++    A    A+A+TD NN+F ALEFSQ+    GI+PI
Sbjct: 2    FGHLQVLSAYSFQNSTILIKDLIQDANAKHIEALALTDKNNMFGALEFSQECLKYGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +  + ++               +   +LL     GY  L+++   + L +       
Sbjct: 62   FGMEASVMIE-------------GEIYPFILLAKDDIGYFDLVKVCCDINLHEDK----C 104

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L  L       + +++G + G ++R       + A K L +FK +F D  YV +Q H 
Sbjct: 105  IDLKSLALY-KGHMYIISGSAQGIVERLVAKEMEEEAVKYLKSFKDIFQDNYYVMIQNHH 163

Query: 191  G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                +    +++ LA    + ++ +N  ++L + D  A D++ A      +  K  P   
Sbjct: 164  IKLQQALNERIISLAKYCRVKILCSNEVIYLKKADALAVDLMQAANQGLTLESKYVPITE 223

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              +        +   ++    L  T E+ + C   + +    LP F          E   
Sbjct: 224  EKYLKTEDEMKMLFDAE---ILAETREVVQNCKATIPLQDKHLPSFPVPHH----GEASE 276

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L+     GL+ R     I        Y +RL +EL +I +M F  YFLIV D++++AK 
Sbjct: 277  YLKGLCQMGLKKRFQNQKI-----PSQYVKRLQYELKIIHQMGFDDYFLIVWDYVRFAKV 331

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I VG GRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDF  DRRDE
Sbjct: 332  NKIQVGAGRGSAAGSLVAYVLGITNVDPIKYDLLFERFLNPERVSMPDIDIDFQDDRRDE 391

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVS 488
            V+ YV  KYG + VAQI+TF +   + A++D+G+ + +P ++++ + K+IP  P      
Sbjct: 392  VVHYVVEKYGQDHVAQIVTFNTYGPRVAIKDMGKVMGIPLARLEIIAKMIPTGPKNKKTI 451

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                   ++F+     DP + +++  +  +E L R+ STHAAG+++  +PL +++P+   
Sbjct: 452  TTMYKTSAQFQSMINQDPLLKKIIGATSVIEHLPRNISTHAAGVILSKQPLREVIPLVLG 511

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHE 607
              +   ++Q++  +IE+ GL+K DFLGLK LT++      + +   +   L+ +P +D +
Sbjct: 512  PTA-TLMSQYSKDYIEEVGLLKMDFLGLKNLTMIDYICKDIKRDINETVFLNQLPLNDQK 570

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY L+    T G+FQLES GMR  L  M+P C +DI+A ++L+RPGP++NI +Y  R+  
Sbjct: 571  TYELIARADTFGVFQLESQGMRNLLRKMKPYCFDDIVAAIALFRPGPMENIPLYLKRRGL 630

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +EK+V   P ++P+LK T GV+IYQEQ+MQ+AQ ++G+SL +AD+LR+A+ KK    M  
Sbjct: 631  QEKVVYPLPELEPILKSTYGVMIYQEQIMQVAQKMAGFSLGKADILRKAVSKKETGLMQS 690

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             KE FI+G    G  +  A+ IFEL+ KFA+YGF K+H+ AY  ++YQ A++K +YP+ F
Sbjct: 691  MKEEFIAGCIDKGYREEKAIEIFELIEKFANYGFGKAHSVAYGYVAYQLAYLKANYPLYF 750

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
             A+ ++ E+ +        Q+ + +++ I+PPSVN     F V +  I YSL AIK VG 
Sbjct: 751  FASILSNELSSETTKLHCIQECKTYHVDILPPSVNYSHARFMVENGHIRYSLLAIKNVGY 810

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               + I+E   +  F+ + DF  R+D  KL+++++ESL+ AGALD F  SR  + ++LD 
Sbjct: 811  AGYKAIVEERKNGLFEDVYDFMMRMDESKLSKKMIESLIDAGALDEFQLSRNTMKKNLDT 870

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            I+ Y             N+   ++     K  L  +       +   E+ VLG Y + HP
Sbjct: 871  IRDYGNLK---------NMLGIDE-----KPVLTIYKDFQD-EKLRKEKEVLGIYLTMHP 915

Query: 968  LDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            +++ K  L       Y    +        + +   +   +    RKG  + ++   +   
Sbjct: 916  IELMKEKLN----TPYINVSSLYEYVNQTVNIVVQLQRVKNITDRKGDEMCFIEGFDETG 971

Query: 1026 EYEANFF 1032
              +   F
Sbjct: 972  SVDGVVF 978


>gi|94971073|ref|YP_593121.1| DNA polymerase III, alpha subunit [Candidatus Koribacter versatilis
            Ellin345]
 gi|94553123|gb|ABF43047.1| error-prone DNA polymerase, DnaE-like protein [Candidatus Koribacter
            versatilis Ellin345]
          Length = 1070

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 278/1046 (26%), Positives = 504/1046 (48%), Gaps = 45/1046 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     ++ L  +S++S L GA     ++ +    + PA+A+ D N ++ +  F   A  
Sbjct: 1    MTAQNQYIELHANSAFSFLRGASLPETLIFRAQQLEYPAMALMDGNGVYGSARFHLAAKP 60

Query: 65   AGIQPIIGCQLDI-DMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLL 122
             G++  +G ++ + D+ + +         +P  P  + LL  + EGYQ L  +V+R+ + 
Sbjct: 61   NGVRAHVGSEIAVRDLGERMAPAAWLPHQWPAEPVRLPLLCESREGYQNLCRMVTRLKMR 120

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181
            +  K      ++ ++E    GL+ LTGG  GP+  A          K +    ++FG + 
Sbjct: 121  EPSKAEGAAVMADVEEFAR-GLVCLTGGDEGPLASALARGGEPEGHKTVEHLVRMFGREN 179

Query: 182  LYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TV 239
            ++V LQRH   ++  R    V++A + +LP++ATN   +  E + E  D+  A+ H   +
Sbjct: 180  VFVELQRHGLREQEWRNQAAVRIARSLQLPILATNGVRYADEPEREIADLFTAIRHHVAL 239

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                         YL+  +EM  +F DLPEA+ NT E+++R +F L       P +   +
Sbjct: 240  KDAGRLLAQNSCRYLRPTAEMARLFRDLPEAVANTWELSQRLTFELDDLGYQFPIYPTPD 299

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             + +    ++ L  +   G+  R         Y     ++++  EL +I ++  +GYFLI
Sbjct: 300  GESM----DSFLEKRVQEGVIKRYGAKNEPDLYARA--QKQVARELALIKKLGLAGYFLI 353

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D I++ ++N+I V  GRGS A S   YAL IT +DP+   LLFERFL+  R   PD D
Sbjct: 354  VWDIIRFCQQNDILV-QGRGSAANSAVCYALEITAVDPVGMELLFERFLSEARGEWPDID 412

Query: 420  IDFCQ-DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            +D    D+R++ I+YV  +YGH   A      + + K+A R+VG+AL      +++L KL
Sbjct: 413  LDLPSGDKREQAIQYVYTRYGHLGAAMTANVITYRGKSAAREVGKALGFDVETLNKLTKL 472

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            +            + +           P + + L++  +++ L RH   H+ G+VI    
Sbjct: 473  VSTWEWRG-PNDTLENQFESAGFEAKHPHIAKYLDLCSRIQDLPRHLGQHSGGMVICQGQ 531

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597
            L  +VP+         V Q++        +IK D LGL  + +++  +D + +   V VD
Sbjct: 532  LDSVVPIEPASMPGRSVVQWDKDDCADMHIIKVDLLGLGMMAVIKDCVDLVPRHYGVPVD 591

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P +D + Y  L    T+G+FQ+ES     +L    P    DI+  V++ RPGPI  
Sbjct: 592  LAQLPQNDGDVYRTLQKADTVGMFQVESRAQMASLPRNYPTRFYDIVVQVAIIRPGPIVG 651

Query: 658  IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +   Y  R+  KE++   HPL++P+LK T GV ++QEQ++++A +++ +S +EA+ LRR
Sbjct: 652  NMANPYMRRRQKKEEVTYYHPLLEPVLKRTLGVPLFQEQLLRMAMIVANFSGTEAEELRR 711

Query: 716  AM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            A+  ++  + M +   +  +G ++NG        I + ++ FA YGF +SHAA++A+I+Y
Sbjct: 712  ALGMRRSTQRMRELGVKLRAGMTENGFDPKTQEEIIQSISSFALYGFPESHAASFALIAY 771

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831
             +A+ K HY   F AA +  +           +DA++  ++++P  V     D  V    
Sbjct: 772  ASAYFKVHYLAAFTAAILNNQPMGFYSPAVLVKDAQRHGLRVLPVDVQRSVWDCTVEHAG 831

Query: 832  -DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             + ++   L  ++G+   TA  ++++  +  PF S ED   RV    LNR+ L +L   G
Sbjct: 832  DERKLRLGLRYVRGLRQETAEILVKSRENHGPFASSEDLGRRVPL--LNRKELVALAQIG 889

Query: 890  ALDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AL+  G    R   L  ++ + +           +   +      +  ++  +   +  N
Sbjct: 890  ALNWVGGTAHRRDALWQVERVSR-----------RPGPLL----QSAEEEEDVSPLAQMN 934

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
               R   +    G     HP+  ++  L KM +   E+      G  +R+A  V+++Q+ 
Sbjct: 935  WEERLVADFNGTGLTVGKHPMTYHRERLAKMRVLSAEQLQVAEDGRQVRIAGCVIARQRP 994

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T KG    +++  +      A   P
Sbjct: 995  GTAKG--FVFLSIEDETGIANAIISP 1018


>gi|134287639|ref|YP_001109805.1| DNA polymerase III, alpha subunit [Burkholderia vietnamiensis G4]
 gi|134132289|gb|ABO60024.1| DNA polymerase III, alpha subunit [Burkholderia vietnamiensis G4]
          Length = 1048

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 286/1036 (27%), Positives = 462/1036 (44%), Gaps = 62/1036 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A AA + 
Sbjct: 10   PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAANMA 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG    +   D                    L    +GY  L E +S   +  + K +
Sbjct: 70   LIIGSHFRLTAADGAPALA-----------FTALAMNRDGYGNLCEFISLGRMRGK-KGT 117

Query: 129  VRICLSWLQ--EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L+  E     L  L    +  I    F  + Q  + ++  F ++FGDR +V L
Sbjct: 118  YRLAPLDLEHPEAPYTHLRGLPDCIA--ILSPDFPANEQRLDAQVEWFARVFGDRAWVAL 175

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              H R  D      V ++A  H +P+VAT+  L          DVL  +     V  +  
Sbjct: 176  TLHARAMDDIHRGVVERVAARHGVPVVATSWPLMHVRSRKPLQDVLTGIRVGRPV-SECG 234

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     RS +         ALE TV +ARRC+F L       P  +     D   
Sbjct: 235  YELAPNAERHLRSRLRLANLYPAGALEETVRVARRCTFSLDDLKYEYPDELVPAGTD--- 291

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 LR +   G   R   G         D + +++ EL +IA +K+  YFL V D +Q
Sbjct: 292  -PATYLREQTYIGARRRFPAG------IPIDVQAQIEHELQLIADLKYEAYFLTVYDIVQ 344

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A++  I    GRGS A S   Y L +T++DP R S+LFERF++ +R   PD D+DF   
Sbjct: 345  FAREQGIL-CQGRGSAANSSVCYCLGVTEVDPSRQSMLFERFISKERNEPPDIDVDFEHQ 403

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV++Y+  KYG +R A      + + ++ALR+ G+AL +  + VDR+ K      + 
Sbjct: 404  RREEVMQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDPAIVDRVAKQHHWFDSR 463

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               LQ  ++           P   +    + +L G  RH S H+ G VI    L++LVP+
Sbjct: 464  ADLLQRFSE----AGLDPDAPLNQQWAAFAAQLLGYPRHLSQHSGGFVISRGKLTRLVPV 519

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFD 604
                  D  + Q++   IE  G++K D L L  L++++++LD +  +RG   +L  IP +
Sbjct: 520  ENAAMEDRSIIQWDKDDIEALGILKIDVLALGMLSMVRRALDMISEKRGETFELQDIPAE 579

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGP+   +V+   
Sbjct: 580  DKATYDMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIVRPGPVQGGMVHPFL 639

Query: 665  KNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721
            +  +  E +      ++  L  T GV I+QEQVMQ+A L +G+S  EAD LRRAM     
Sbjct: 640  RRRQGLEPVTFPSEGMEKALARTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKR 699

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K  ++   ER +SG  + G  +  A +IF  +  F +YGF +SHAA++A++ Y +AW++ 
Sbjct: 700  KGGLEPYHERLVSGMLERGYDREFAESIFAQIKGFGEYGFPESHAASFALLVYSSAWLRR 759

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYY 837
            H P  FLAA +  +        +  QDAR+  ++++P  VN    D  +        +  
Sbjct: 760  HEPAVFLAALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWDSALEGPATSAPVRL 819

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
              + ++G+    A  I  A A +PF  + D   R    +L+R  L+ L  A AL      
Sbjct: 820  GFSLLRGMREDVAGRIELARAARPFVDVADLARRA---RLDRHDLQVLARANALCSLTGG 876

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R             A            ++    +       T+      +       + R
Sbjct: 877  RR------------AALWLAAAALPDRDLLRGTERDD----TVPALPQASEGHEIVTDYR 920

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             +GF    HPL + +  L    ++  E+      G   R   +V  +Q+  T  G  + +
Sbjct: 921  AMGFTLGRHPLALLRERLALDRLQSAEQLATLRSGQLARACGLVTVRQRPGTANG--VLF 978

Query: 1018 VTFSEPAKEYEANFFP 1033
            +T  +   +     +P
Sbjct: 979  MTLEDETGQVNVILWP 994


>gi|282854988|ref|ZP_06264320.1| error-prone DNA polymerase [Propionibacterium acnes J139]
 gi|282581576|gb|EFB86961.1| error-prone DNA polymerase [Propionibacterium acnes J139]
          Length = 1134

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 286/1077 (26%), Positives = 464/1077 (43%), Gaps = 105/1077 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HSSYS L+GA S  +++ + A      +A+TD + L+  +  ++ A A G+  I
Sbjct: 57   YAELHCHSSYSFLDGASSPEDLVIRAAELGLSGLALTDHDGLYGVVRMAEAAEACGLSTI 116

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSV 129
            IG +L I + +      Q     P    +++L +  EGY+RL E ++  YL++ G K   
Sbjct: 117  IGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTDAYLVEGGHKGRP 171

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
               L  L E+      +LTG   G + +         AE  L     LFG D + V L  
Sbjct: 172  VHDLDHLAEVADGHWTVLTGCRKGAVRQGLVRGMP-QAEAELRRLVDLFGIDNVLVELTD 230

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR   D      + +LA  H L  VAT  + +   E +E    L AV     + + D   
Sbjct: 231  HRAPTDSRDNDLLAELASRHSLSTVATTAAHYAGGEQFELACALSAVRARRSLDEMDGWL 290

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                   L++ +EM  +FS   +A++NTV +A R +F L+   P LP     +       
Sbjct: 291  PPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLKSVRPRLPDQKVPDG----HT 346

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR+    G         +A        + RL  EL++I    F+GYFLIV+D  ++
Sbjct: 347  PISWLRHLVEEGRRACYGDDPVA--------KDRLATELDLIEDRGFAGYFLIVSDIAEF 398

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I    GRGS A S   Y L IT +DP+ + L FERFL+  R   PD D+DF   R
Sbjct: 399  AQSQGIL-CQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREEEPDIDVDFDARR 457

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D   + +      P
Sbjct: 458  REEVIQYVYAKYGRRNAAQVADVITYRPRSAIRDMAKALGYSQGQQDAWSRQMERRSVPP 517

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +                     D +  ++Q++ GL RH   H+AG+V+   P+ ++ P+ 
Sbjct: 518  LPHDP-----------DGPEIPDDVTTLAQQVMGLPRHLGIHSAGMVLTREPVGRICPIE 566

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                    V Q++ +     GL+KFD LGL  L+ L  S D ++Q       L+ IP ++
Sbjct: 567  PARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCGRFWTLASIPRNE 626

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNN 663
               Y +L    ++G+FQ+ES      L  ++P C  D+   + L RPGP+    +  Y  
Sbjct: 627  PGVYDMLCRGDSIGVFQVESRAQIGVLPRLRPRCFYDLAVEIGLIRPGPVQGGAVHPYIR 686

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   ++++AD+LRRAM  K+  
Sbjct: 687  RRTGAEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTVADADLLRRAMGSKRGV 746

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E ++  + +   G + NGI    A  I+  +  FA++GF +SHA ++A + Y +AW+K H
Sbjct: 747  ERINSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFAGLVYTSAWIKLH 806

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP----------------------- 819
            YP  FLAA +  +            DAR+  +    P                       
Sbjct: 807  YPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSLVGADLELLDACCEELGS 866

Query: 820  -------SVNTPCVD------FKVGDN----------RIYYSLAAIKGVGTTTARHIMEA 856
                          D      F    +           +   L+ + G+   TA  I+E 
Sbjct: 867  EELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSGINIETATRIVEE 926

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
               + F SL+D   RVD        +E+L  AGA D    SR   L  +  I        
Sbjct: 927  RERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQIGQINGVGPGQL 983

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
              +      +                           ++ R  G   + HP+   +  L 
Sbjct: 984  DVQVVTQPPL----------------LPEPTQMELLGDDLRATGISTADHPVRQVRDALN 1027

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + G+   +       G  + +A +V  +Q+  T  G+   ++   +          P
Sbjct: 1028 RRGVVRVDRLDGVESGRRVEVAGVVTHRQRPGTAGGA--TFLNLEDETGLLNVIVTP 1082


>gi|225873142|ref|YP_002754601.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC
            51196]
 gi|225792983|gb|ACO33073.1| DNA polymerase III, alpha subunit [Acidobacterium capsulatum ATCC
            51196]
          Length = 1072

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 298/1046 (28%), Positives = 501/1046 (47%), Gaps = 43/1046 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   +V L   S++S LEG  +  ++ ++ AA Q PA+A+ D N L+ A  F   A  
Sbjct: 1    MTE--RYVELHAASAFSFLEGGSNPESLTERAAALQMPAMALLDRNGLYGAARFHTSAQR 58

Query: 65   AGIQPIIGCQLDI-DMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLL 122
             G+Q  IG ++ + +    L         +PT P  + LL +T +GYQ L +L+SR  L 
Sbjct: 59   HGVQANIGAEVAVPEFGARLTPPAWLPHLWPTEPVRLPLLCATRKGYQNLCQLISRYKLR 118

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181
            +  KQ     ++ L++   EGLI LTGGS GP+  A         +K L     +FG   
Sbjct: 119  EPSKQEGAARVNELEQF-AEGLICLTGGSEGPLAAALMQGGEAAGQKLLHRLTAIFGHQH 177

Query: 182  LYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            +YV LQRH   ++  R    +++A+   LP+VATN   + SE D E  D+  A+ H T +
Sbjct: 178  VYVELQRHHDREQEWRNQAALRIAHKLRLPMVATNGVRYASERDREVLDLFTAIRHHTPL 237

Query: 241  SQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             +           +L++  EM ++F D+P A+ENT+E++ R +F L       PR+    
Sbjct: 238  DRAGHLLSANSLRHLRSAREMAALFRDIPAAIENTIELSSRLAFQLSDLGYEFPRYPVPA 297

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             D +    ++ LR +   G+ +R    +           ++++ EL++IAR+ F+GYFLI
Sbjct: 298  GDCM----DSFLRKRVQEGVALRY--NSRHNHDLLARVHKQVERELSLIARLGFAGYFLI 351

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D I++ K+++I V  GRGS A SV  YAL IT +DP+   LLFERFLN +R   PD D
Sbjct: 352  VWDIIRFCKQHDILV-QGRGSAANSVVCYALEITAVDPVGMDLLFERFLNENRGEWPDID 410

Query: 420  IDFCQ-DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            +D    ++R++ I+YV  +YG    A      + + K+A R+VG+AL      + RL  L
Sbjct: 411  LDLPSEEKREQAIQYVYQRYGELGAAMTANVITYRGKSAAREVGKALGFDADALQRLSGL 470

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            + N      +  ++A   R      A P + R LE+  +++ + RH   H+ G+VI    
Sbjct: 471  VANFEWKGPT-DSLAHSFRHAGFDPAQPRIARYLELCTRIQDMPRHLGQHSGGMVICQGQ 529

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
            L+Q+VP+ R       V Q++ +     G+IK D LGL  + +L+  ++ + +   +   
Sbjct: 530  LNQVVPVERASMPGRTVVQWDKEDCADMGIIKVDLLGLGMMAVLKDCVELIPRHYGERID 589

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--D 656
                  D   Y  L    T+G+FQ+ES     +L    P    D++  V++ RPGPI   
Sbjct: 590  LAQLPQDEAVYRTLQRADTVGMFQVESRAQMASLPRNMPAKFYDLVVQVAIIRPGPIVGK 649

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  Y  R+ GKE +   HP ++P+L+ T GV ++QEQ+++IA  ++ +S +EA+ LRRA
Sbjct: 650  MMHPYMRRRQGKEPVTYPHPSLEPVLQRTLGVPLFQEQLLRIAMTVANFSGTEAEELRRA 709

Query: 717  M-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            +  ++  E M   + +  +G + NGI+      I + ++ FA YGF +SHAA++A+I+Y 
Sbjct: 710  VGMRRSWERMKNLESKLRAGMAANGIAPATQEQIIQQISSFALYGFPESHAASFALIAYA 769

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-- 833
            +A++K  Y   F  A +  +           +DA++  +++ P  +        +     
Sbjct: 770  SAYLKVKYLAAFTCALLNNQPMGFYMPAVIVKDAQRHGLRVKPIDIQISAWPCTLEQEPD 829

Query: 834  ---RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                +   L   +G+   TA   + A   + PF S E+  +RV    L+R+ L  L   G
Sbjct: 830  DSLSLRLGLGYARGLRQRTAEATLHARQENGPFSSAENLVARVP--ALSRKELALLARIG 887

Query: 890  ALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AL+       R   L  ++   K               +FA       ++          
Sbjct: 888  ALNSLDQVAHRRDALWQIERAGK-----------PEGPLFAQSNEALREQDVALPLMPMT 936

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +  R   +    G     HP+   +  L   GI           G  +R+A  V+++Q+ 
Sbjct: 937  TEERLVADYFGTGLTVGKHPMSYRRQELDHAGILTASALQQFQDGKLVRVAGCVIARQRP 996

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T KG    +++  +          P
Sbjct: 997  GTAKG--FVFLSMEDETGIANIIVTP 1020


>gi|169348422|ref|ZP_02866360.1| hypothetical protein CLOSPI_00137 [Clostridium spiroforme DSM 1552]
 gi|169293891|gb|EDS76024.1| hypothetical protein CLOSPI_00137 [Clostridium spiroforme DSM 1552]
          Length = 1017

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 349/1023 (34%), Positives = 541/1023 (52%), Gaps = 52/1023 (5%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HLQV+S+YS     + + ++  K +     A+A+TD +N+F A+EF++      I+PI G
Sbjct: 4    HLQVYSAYSFQNSTILIEDLCKKASDLHYEALALTDKDNMFGAMEFTKCCAKYRIKPIYG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             +  +++   +               ++LL     GY  L+++ S + L D       I 
Sbjct: 64   LEASVEIDHEI-------------YPLILLAKNTSGYFSLVKITSDISLSDNK----AIK 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
               L +   E L +L+G   G I+R         A K L  FK  F D  YV LQ H   
Sbjct: 107  FDDLVK-HQEHLFVLSGCKEGIIERLILKELDSEALKYLKLFKNSF-DNFYVCLQNHNLA 164

Query: 193  DRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             ++    ++V L     +P+  +N   +L  ++    ++L A +    +           
Sbjct: 165  MQHKVNERLVALTLLENIPICVSNEVRYLESKEAYTLELLQAFSKGQTLDINH---EPVT 221

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
              L  +S          + +ENT  I   C+  + +H   LP++   +         + L
Sbjct: 222  DQLYLKSSYEMESIFDKKYIENTDYIINLCNASIPLHHMHLPKYPVPK----NGNASDYL 277

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            +     GL+ R     I        Y QRL  EL+VI +M F  YFLIV D++++AK N 
Sbjct: 278  KQLCSVGLKKRFKNQKINT-----VYLQRLKKELDVIKKMGFDDYFLIVFDYVRYAKINK 332

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I VGPGRGS AGS+ AY L IT+IDPL+++L+FERFLN +R+SMPD DIDF  DRRDE++
Sbjct: 333  ILVGPGRGSAAGSLVAYVLGITNIDPLKYNLVFERFLNEERVSMPDIDIDFQDDRRDEIV 392

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQ 490
             YV NKYG E V QI+TF +   K A++D+G+ L +   +++ L K IP  P +  S  +
Sbjct: 393  EYVTNKYGQEHVGQIVTFSTYGPKVAIKDLGKVLGITLPRLELLAKNIPTGPKNRKSAKE 452

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   F+     D ++ R++     +E L R+ STHAAG+V+ +  L+Q+VP+ R   
Sbjct: 453  VYETSYNFQSMVNRDLALRRIMPSVFIVEKLPRNISTHAAGVVLSNDRLNQVVPLTRGPN 512

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETY 609
            +   VTQ++  +IE  GL+K DFLGLK LT++   L D     G K++++ I  +D +T+
Sbjct: 513  NG-IVTQYSKDYIEDVGLLKMDFLGLKNLTIIDYILKDIEKNDGRKININEIELNDKKTF 571

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L++   T GIFQLES GM+  L  MQ +C++D+IA ++L+RPGP+ NI  Y  RK G+E
Sbjct: 572  QLISRGDTFGIFQLESPGMKNLLIKMQCNCLDDLIAAIALFRPGPMANIPAYIARKKGEE 631

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +      + P+L  T G+IIYQEQ+MQ+AQ ++G+SL++AD+LR+AM  KI   M   K
Sbjct: 632  PVTYPLDCLKPILSSTYGIIIYQEQIMQVAQRVAGFSLAKADILRKAMSDKIVSLMASMK 691

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FISG   NG S++ AV IFEL+ KFA+YGFNK+H+ AY  ++Y  A++K +YP+EF +
Sbjct: 692  TEFISGGIANGFSESEAVGIFELIEKFANYGFNKAHSVAYGYVAYWLAYLKANYPLEFFS 751

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A ++ E  +        Q+ +++ ++I+PPS+N     FKV D  I YSL AIK VG   
Sbjct: 752  ALLSNEQSSDSNKINCIQEGKKYGVKILPPSINYSTDRFKVEDGNIRYSLLAIKNVGYAG 811

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
             + I++      F  + DF SR++S KLN ++++SL+ AGA D F  +R  +  +L +I 
Sbjct: 812  YQAIIQEREKGLFKDVFDFISRMESSKLNSKMIDSLIMAGAFDEFELNRSTIKYNLSHIM 871

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YAQ                      D+  +     +N     E E+ VLG Y S HP+ 
Sbjct: 872  EYAQLKN---------------MIGIDEPPILTIVKDNRMKILEEEKLVLGVYLSMHPIA 916

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            + K  L  + I    E    I    + +   +   +    +KG  + +V   +   E + 
Sbjct: 917  LIKQNL-NLKIISVSELHNNID-KYVTIVMAISRVKAIVDKKGQEMCFVDGYDETGEIDG 974

Query: 1030 NFF 1032
              F
Sbjct: 975  VVF 977


>gi|182679714|ref|YP_001833860.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp. indica
            ATCC 9039]
 gi|182635597|gb|ACB96371.1| DNA polymerase III, alpha subunit [Beijerinckia indica subsp. indica
            ATCC 9039]
          Length = 1090

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 280/1047 (26%), Positives = 452/1047 (43%), Gaps = 77/1047 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +S  +  LQV S +S L GA S   +  + A     A+A+ D ++L   +   Q A A
Sbjct: 1    MNRSARYAELQVTSHFSFLRGASSCEELFAQAALLGIEALAVVDRHSLAGIVRAHQAAKA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+ IIGC+LD+                    S+++  +    Y RL  L+S       
Sbjct: 61   TGIRLIIGCRLDLADGM----------------SVLVYPTDRASYARLCRLLSLGKQRGG 104

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K    +    L   G   L +L    +  I               L      F DR Y+
Sbjct: 105  -KAQCHLDWLDLVAHGEGLLTILIAEKADEICGL-----------HLRRLHDTFKDRAYL 152

Query: 185  NLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ- 242
             L  H R  D+ R  Q+  LA    +P V TN+ LF         DV+  + H   + + 
Sbjct: 153  ALTLHRRPNDQLRLHQLAVLAARFRVPTVVTNDILFHEPARRILQDVVTCIRHGCTIDEA 212

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
              R     D YLK   EM  +FS  PEAL  T+EI  RC F L+      P         
Sbjct: 213  GFRRERHADRYLKPPEEMHRLFSLYPEALARTLEITDRCQFSLEELTYQYPEEKTMPG-- 270

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                 +  L    + G      +G           +  LD EL +IA++ ++ YFL V  
Sbjct: 271  --LTAQEALTRLTLKGAADHYPEGV------PDKVQALLDHELELIAKLNYAPYFLTVNA 322

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             + +AK   I    GRGS A S   Y L IT I P +  LLFERF++ +R   PD D+DF
Sbjct: 323  IVHFAKTEGIL-CQGRGSAANSAVCYVLGITSIAPDQHDLLFERFVSEERREPPDIDVDF 381

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+ VI+++   YG +R A   T    +AK ALRDVG+AL +P   +  L       
Sbjct: 382  EHERREIVIQWIYKTYGRDRAALCATVIRYRAKGALRDVGKALGLPEDLLTMLSSQTWVW 441

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                + +++  +        L DP +   L+++++L G  RH S H  G V+    L +L
Sbjct: 442  SKQGLDVKSAKE----LNLNLDDPRLRLTLDLARELIGTPRHLSQHPGGFVLTHDRLDEL 497

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLI 601
            VP+     +D  V +++   IE    +K D L L  L+ +++S + LA+     + L+ I
Sbjct: 498  VPIEPAAMTDRQVIEWDKDDIEVLKFMKVDVLALGMLSCMKRSFNLLAEHKKLALALTSI 557

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+
Sbjct: 558  PSEDPHTYAMIQRADTIGVFQIESRAQMSMLPRLKPKTFYDLVIEVAIVRPGPIQGDMVH 617

Query: 662  NNRKNGKEKIVSIHP--LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
               +  + K     P   +  +L++T GV ++QEQ M+IA   +G++  EAD LRR+M  
Sbjct: 618  PYLRRREGKEDPDLPRAELKNVLEKTLGVPLFQEQAMRIAIECAGFTPGEADQLRRSMAT 677

Query: 720  KIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
                  ++  K++ ++G   NG     A  IF  L  F  YGF +SHAA++A+++Y ++W
Sbjct: 678  FKHTGTINTFKDKLVNGMVANGYEHAFAERIFHQLEGFGSYGFPESHAASFALLAYASSW 737

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------D 832
            +K  +P  F AA +  +        +  +DAR   ++I P  VN    D  +        
Sbjct: 738  IKCWHPDVFCAALLNSQPMGFYAPAQIVRDARNHGVEIRPVCVNHSHWDCTLEATGDEKR 797

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              +   +  +K +    A  I+ A AD+PF S+ED   R     +    L +L  A A  
Sbjct: 798  FALRLGMRMVKRLSNQDAATIVAAKADQPFLSIEDLWHRA---GVPVSALVALAEADAFA 854

Query: 893  -CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-----TFSDKITLEKFSVE 946
              FG +R + L ++  ++                +FA             +      +  
Sbjct: 855  PTFGIARRKALWTIKALRD-----------NPLPLFAAASAREAAFVSEIREPAVTLTPM 903

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
             +      +   +G     HP+   +  L +  I    E +       I  A +V+ +Q+
Sbjct: 904  AAGGEVVEDYVSVGLTLREHPIAFLRGDLARRRIATCAEVIHARDRCWIETAGLVLVRQR 963

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + KG  + ++T  +         +P
Sbjct: 964  PGSAKG--VIFITIEDETGIANLVIWP 988


>gi|116333410|ref|YP_794937.1| DNA polymerase III, alpha subunit [Lactobacillus brevis ATCC 367]
 gi|116098757|gb|ABJ63906.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus brevis
            ATCC 367]
          Length = 1121

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 335/1025 (32%), Positives = 522/1025 (50%), Gaps = 41/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV LQV S+YSLL+    +++++         A+A+ D N ++ A+ F      A I+P+
Sbjct: 2    FVPLQVFSTYSLLQSTNRIDDLVQTAKKRGYTALALADKNVMYGAVAFYNACRQADIKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  L          T QG          V L     GYQ+L++L +  Y +  G     
Sbjct: 62   LGLTL----------TAQGLNDATQAYDWVFLAQNFTGYQQLMQLST-AYQVGGG----P 106

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L+ L +  ++  ++        I      +    A++ L         +L + +    
Sbjct: 107  VDLTQLTKNLSQLTMI--APLDSEIHTLVANDQLAPAQQILHQLNDWSVGQLAIGVSP-- 162

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                     +  L+     PLVA +   +L+ +D+ A  VL A+     +S     +   
Sbjct: 163  DLTAVSRDHLQSLSQATTTPLVALSPVAYLNRDDHFAVTVLRAIDAGETISDPTTEQQVQ 222

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              +   R             L   V +    +    V        + +     Q+   + 
Sbjct: 223  GTH-WLRPAAEETQRFANVGLTAAVTMTASIAAASTVTLQFQQPQLPQFPTPNQENSRDY 281

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR + VAGL+ RL    I        Y+QRLD EL VI RM F  YFLI+ D + +A + 
Sbjct: 282  LRERCVAGLKRRLTANHITDATP---YQQRLDHELGVIHRMGFDDYFLIIWDVMNFAHQA 338

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            NI  GPGRGS AGS+ AY L IT++DPL + LLFERFLN +R  MPD D+D   +RR++V
Sbjct: 339  NIQTGPGRGSAAGSLVAYVLAITEVDPLAYDLLFERFLNEERAQMPDIDLDIPDNRREQV 398

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            ++YV +KYGHERVAQIITFG+L AKAALRDVGR L M   ++      IP +    +  +
Sbjct: 399  LQYVHDKYGHERVAQIITFGTLAAKAALRDVGRVLGMAPYELSDWSAAIPAELHITL-QR 457

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A     R R           L   +QKLEGL RH STHAAGIV+  +PL  LVP+     
Sbjct: 458  AYDQSQRLRNLVADSSRNQLLFATAQKLEGLPRHYSTHAAGIVLSQKPLRDLVPLQPGS- 516

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETY 609
             +L +TQ+    +E  GL+K DFLGL+ L++L  +L     Q G  VDL+ I  +D  T 
Sbjct: 517  EELLMTQYPKDTVEAVGLLKMDFLGLRNLSILANALALVKKQTGKIVDLNQIDLNDPATL 576

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  T  T G+FQ ESSG+++ L  +QPD  E + A+ +LYRPGP++NI  +  RKNG+E
Sbjct: 577  KLFATGETNGVFQFESSGIKRVLRQLQPDSFELVAAVNALYRPGPMENIDTFIRRKNGQE 636

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +      + P+L  T GV++YQEQVMQ+A ++ G++L +AD+LRRAM KK K+ MD  +
Sbjct: 637  PVTYPADALAPILGPTYGVLVYQEQVMQVASVMGGFTLGQADLLRRAMSKKKKQTMDAMQ 696

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            ++F++GA + G    +A  +F  + +FA+YGFN+SHA AY+ +++Q A++K HYP  F A
Sbjct: 697  KQFVAGAQQRGYELAVAQRVFAYIDRFANYGFNRSHAVAYSKLAFQLAYLKAHYPAAFYA 756

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            + M   ++   K K +  +A++  + ++PP +N     F +  + I + L++IKGV    
Sbjct: 757  SLMNSVINVGAKTKVYLTEAKRHGVTVLPPDINRSTAYFNLYHSAIIFGLSSIKGVRRDF 816

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             R ++       PF  L  F  R+ SK     +L +LV+AGA D FG++R +L+ +L   
Sbjct: 817  LREVLAERHEHGPFKDLHQFLERIASKYRKADLLNALVYAGAFDHFGHNRAELIAALPEF 876

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                +               + +   +    ++     +   +   E+ VLG Y SGHP+
Sbjct: 877  ISSVELSG-----------DNVELIAALAPKIKSQPDLDLMTKLSQEEAVLGAYLSGHPV 925

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            + Y+ + R++  +   E  A      + +   V+  +Q +T++G  + +VT S+   +  
Sbjct: 926  EQYQQLGRQLQAQAVSELTA---NTRVTVLLYVIKIRQIRTKRGEPMAFVTGSDETADVS 982

Query: 1029 ANFFP 1033
               FP
Sbjct: 983  VTIFP 987


>gi|145595754|ref|YP_001160051.1| error-prone DNA polymerase [Salinispora tropica CNB-440]
 gi|145305091|gb|ABP55673.1| DNA polymerase III, alpha subunit [Salinispora tropica CNB-440]
          Length = 1124

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 288/1052 (27%), Positives = 463/1052 (44%), Gaps = 81/1052 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  H+++S L+GA     + ++       A+A+TD +  +  + F++ A A  +  +
Sbjct: 74   YAELHTHTNFSFLDGASHPEELAEEAVRLGLTALAVTDHDGFYGVVRFAEAARALHLPTV 133

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +D+            P P    ++LL    EGY RL   +SR  L    K    
Sbjct: 134  FGAELSLDLPG-----APNGEPDPLGRHLLLLAHGHEGYARLAATISRAQLRGGEKGRPI 188

Query: 131  I-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
               L+ +     + +++LTG   G +  A        A + L     LFG + + V L  
Sbjct: 189  YGELAEVAAELRDHVLVLTGCRKGHVPAALLTEGVDAAARELDRLTALFGAETVAVELTD 248

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    D  R   + +LA    LP VATNN  + +         L AV     + + D   
Sbjct: 249  HGHPIDADRNDALAELAEAAGLPTVATNNVHYATPGRRRLATTLAAVRARRSLDEIDGWL 308

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  +L++ +EM + F+  P A+    E     +F LQ+ AP LP +           
Sbjct: 309  PAAGAAHLRSGAEMAARFAAYPGAVARAAEFGAELAFDLQLVAPALPAYPVASG----HT 364

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E + LR+    G   R          H + Y  +L+ ELN+I  + F GYFL+V D + +
Sbjct: 365  EMSWLRHLTARGARERYG----PPEAHPEAY-AQLEHELNMIEELGFPGYFLVVYDIVTF 419

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             ++ +I    GRGS A S   YAL IT++D +R  LLFERFL P+R   PD D+D    R
Sbjct: 420  CREQDIY-CQGRGSAANSAVCYALRITNVDAVRHRLLFERFLAPERDGPPDIDVDIESSR 478

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI++V  +YG E  AQ+    S + ++A+RDV +A      Q D   K I    +  
Sbjct: 479  REEVIQHVYARYGREHTAQVANVISYRPRSAVRDVAKAFGFSPGQQDAWSKQIDRWGSV- 537

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                          A   +   + ++  +  ++   RH   H+ G+VI DRP+ ++ P+ 
Sbjct: 538  -------------AAADVEGIPEPVVAYADAVQTFPRHLGIHSGGMVICDRPVIEVCPVE 584

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                    V Q++       GL+KFD LGL  L  L    D +  R   ++L  +  DD 
Sbjct: 585  WGRMPGRSVLQWDKDDCAAVGLVKFDLLGLGMLAALHHGYDMIGAR---LELGDMTLDDD 641

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664
            E Y +L     +G+FQ+ES      L  ++P C  D++  V+L RPGPI   ++  Y  R
Sbjct: 642  EVYDMLCRADAVGVFQVESRAQMATLPRLKPRCFYDLVVEVALIRPGPIQGGSVHPYIRR 701

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723
            KNG+E +   HPL+   L++T GV ++QEQ+MQ+A  L+G+  +EAD LRRAM  K+  E
Sbjct: 702  KNGQEPVTFPHPLMRNALEKTLGVPLFQEQLMQLAIDLAGFDAAEADQLRRAMGAKRSAE 761

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M +  +R  +G ++ GI+  +A +++  L  FA YGF +SHA ++A + Y ++W+K ++
Sbjct: 762  RMARIADRLYAGMAERGITGELADDVYRKLTAFASYGFPESHAMSFAYLVYASSWLKRYH 821

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN--------------------- 822
            P  FLAA +  +       +    DAR+  +++  P VN                     
Sbjct: 822  PAPFLAALLNAQPMGFYSPQTLVDDARRHGVEVRRPDVNASGAGAVLESTPSTRWGSQPG 881

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881
             P   + +G   +   L +++ +G   A  I     A  P+  + D   RV    L    
Sbjct: 882  EPPHAWGLGGPAVRLGLDSVRTLGGEVAGRIETERAARGPYRDMSDLARRV---GLTAAQ 938

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE+L  A A  CFG +R Q L S       A     +R      +     GT +      
Sbjct: 939  LEALATADAFACFGVTRRQALWSAG----AAAQEHPDR------LPGTVPGTVA-----P 983

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                  +  R   +    G     HP    +  L  +G            G  +R+  +V
Sbjct: 984  TLPGMGAVDRLVADVWATGLSPESHPARFVREQLDALGAVPIARLARVEPGRRVRVGGIV 1043

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +Q+  T  G  + ++   +          P
Sbjct: 1044 THRQRPATAGG--VTFLNLEDETGMLNVTCSP 1073


>gi|254516583|ref|ZP_05128642.1| putative DNA polymerase III alpha subunit subfamily [gamma
            proteobacterium NOR5-3]
 gi|219675006|gb|EED31373.1| putative DNA polymerase III alpha subunit subfamily [gamma
            proteobacterium NOR5-3]
          Length = 1036

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 276/1036 (26%), Positives = 449/1036 (43%), Gaps = 69/1036 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S YS L GA     ++ + AA    AIAITD  +L   ++    A    IQ I
Sbjct: 3    YCELHCLSCYSFLRGASRPEELVAQAAASGYTAIAITDECSLAGVVKAHVAAREHNIQLI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +                     +V L      Y  L  L+S        K    
Sbjct: 63   IGSEFKLS----------------EGIHLVALAPNRTAYGELSGLISLGRRRS-PKGEYE 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L  +       L++        I+R +                +L  +R+++ +Q   
Sbjct: 106  VTLRDVIFHLKRCLLIWLPKDDSEINRGYGK-----------QLARLCRERVWIGVQYLL 154

Query: 191  GYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
            G D  R  + +Q LA   +LPL+A  +           HDV+ A+ ++  V++    R+ 
Sbjct: 155  GNDEIRRYRALQSLASALQLPLLACGDVQMHCATRKPLHDVMTALRYNCSVAELGSRRLP 214

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                   RS            LE T+ +ARRC F L       P  +  +         +
Sbjct: 215  NA-QQHLRSINQLERLYPRSLLEETLNVARRCQFSLSELRYEYPEEVVPKG----HNARD 269

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR     G   R   G           RQR++ EL +IA + +  YFL V D +++A+ 
Sbjct: 270  YLRELTWQGANQRWPDG------TPSVIRQRIEKELALIAELDYEYYFLTVYDIVRFARD 323

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A SV  Y L IT++ P + SLLFERF++ +R   PD D+DF  +RR+E
Sbjct: 324  RGIL-CQGRGSAANSVVCYCLFITEVSPEKISLLFERFISRERDEPPDIDVDFEHERREE 382

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+ +KY   R A   T  + +A++A+RDVG+AL +    VD L K +          
Sbjct: 383  VIQYIYDKYSRRRAALAATVITYRARSAVRDVGKALGLDPIFVDDLAKSLAWWDKQRDLE 442

Query: 490  QAIADDSRFREARLADPSVDRLLEI-SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
               ++       +   P+  +L     Q++ G  RH S H  G VI   P+SQLVP+   
Sbjct: 443  ARFSEHGLKTGQQDDKPNTAQLFYQLVQEILGFPRHLSQHVGGFVISRGPISQLVPVENA 502

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHE 607
              +D  V Q++   IE  GL+K D L L  L+ ++KSL  + +   +   L  IP +D  
Sbjct: 503  SMADRTVIQWDKDDIEALGLLKVDILALGMLSAIRKSLALVHRYDPRIRQLQDIPAEDMA 562

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665
            TY +L    ++G+FQ+ES      L  ++P C  D++  +++ RPGPI   +V+    R+
Sbjct: 563  TYRMLQRADSIGVFQIESRAQMSMLPRLKPACFYDLVIEIAIVRPGPIQGDMVHPYLRRR 622

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G E I      +  +L+ T GV I+QEQV+++A + +G++  EAD LRRA+    +   
Sbjct: 623  QGLESISYPDEAVKSVLERTLGVPIFQEQVIRLAMVAAGFTGGEADQLRRAITNWGRNSK 682

Query: 726  -DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
                +++   G    G S+  A  +FE +  F  YGF +SH+A++A+++Y ++W+K H+P
Sbjct: 683  LLSFEKKLTDGMLSRGYSEDYAQRLFEQIKGFGGYGFPESHSASFALLAYVSSWLKCHHP 742

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-------IYY 837
              F    +  +        +  QDAR+  +  +   VN    D ++ D+        I  
Sbjct: 743  GAFYVGLLNSQPMGFYTPSQLIQDARRHGVITLAADVNHSDWDHQLLDDGEQGTGAPIRL 802

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  IKG+    AR I  A    P+  + D   R +   LNRR +E+LV A AL      
Sbjct: 803  GLRLIKGLSKDAARRISAARRHSPYRQIADLRKRAE---LNRRDMEALVDADALVSLSGH 859

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R Q    +    + A+ + +        + + +                  +     + R
Sbjct: 860  RHQARWQV-MALEPARPLLEYEQQATGALLSDD----------VCLPEPAIAESVIADYR 908

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
              G     HPL + +        K  ++  A   G  +R+A +V  +Q+  T  G  + +
Sbjct: 909  STGVTLRAHPLALLRGQAPFNSCKRQQDLAALNDGRFVRIAGLVTCRQRPGTASG--VLF 966

Query: 1018 VTFSEPAKEYEANFFP 1033
            +T  +         +P
Sbjct: 967  LTLEDETGNNNVVVWP 982


>gi|82703712|ref|YP_413278.1| DNA polymerase III, alpha subunit [Nitrosospira multiformis ATCC
            25196]
 gi|82411777|gb|ABB75886.1| error-prone DNA polymerase, DnaE-like protein [Nitrosospira
            multiformis ATCC 25196]
          Length = 1040

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 267/1041 (25%), Positives = 455/1041 (43%), Gaps = 69/1041 (6%)

Query: 5    LEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +  S P +  L   S+++ L+GA     ++++ A     A+AITD  ++   +    +A 
Sbjct: 1    MPSSAPDYAELHCCSTFNFLKGASMPEELVERAATLGYSALAITDECSMAGVVRAHAEAK 60

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
              G+  +IG +  ++                    +V L    EGY  L EL++      
Sbjct: 61   KTGLHLLIGSEFVLEDG----------------LRLVGLAMNREGYGNLCELITLARQRS 104

Query: 124  QGKQSVRICLSWLQEI-GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
              K + RI  +  +       L  L       I R    + S V  + +   + LF  R 
Sbjct: 105  A-KGTYRITRADFESCTDAPHLARLPDCLILLIPRRNQADGSWV--EDMRWVRSLFPGRG 161

Query: 183  YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            +++++R     +     ++   A T  +PLVA  +            D + A+  S  + 
Sbjct: 162  WISVERLLHAGEEVWFERIRHAAETIGMPLVAAGDVHMHDRAHKPLQDTMTAIRLSQPL- 220

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                  + P+     R+ +       PE L+ T+ IA RC+F L             E  
Sbjct: 221  AACGYALQPNAEQHLRTRLELAQLYPPELLQETLSIAARCTFSLDELRY----EYPDELT 276

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               +   + LR     G+  R  +GA          R++++ EL +IA +K+  YFL V 
Sbjct: 277  GTDETYTDYLRRMVENGMRWRFPKGASI------KVRKQIEHELKLIADLKYEPYFLTVF 330

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +A+   I    GRGS A S   Y L IT+IDP R +LLFERF++ +R   PD D+D
Sbjct: 331  DIVSFARSQGIL-CQGRGSAANSAVCYCLGITEIDPERSNLLFERFISRERNEPPDIDVD 389

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F   RR EVI+Y+  +YG +R A   T  + + ++A++DVG+AL +   ++ RL   +  
Sbjct: 390  FEHQRRGEVIQYIYRRYGRDRAAIAATVITYRTRSAVQDVGKALGLDIERIRRLSTSLAR 449

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                    + + ++          P + +L+ ++  L G  RH S H  G V+    L +
Sbjct: 450  WDKSSDINKRLGEN----GFDPGSPVIRQLILLTTLLYGYPRHLSQHVGGFVLTRDKLCR 505

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSL 600
            +VP+      +  + Q++   + + GL+K D L L  L+ + ++LD + ++RGV   +  
Sbjct: 506  IVPIENAAMPNRRIIQWDKDDLAEVGLMKVDVLALGMLSAIHRALDLISSRRGVPFQMQD 565

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D +TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V
Sbjct: 566  IPPEDEKTYDMICKADTIGVFQIESRAQMSMLPRLRPRTFYDLVVEVAIVRPGPIQGDMV 625

Query: 661  YNNRKNGKEKIVSIHPL-IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            +   +  ++K    +P  ++  L  T GV I+QEQVMQ+A L +G++  EAD LRR+M  
Sbjct: 626  HPYLRRRQDKEKPDYPEGVETALARTYGVPIFQEQVMQVAMLAAGFTSGEADQLRRSMAA 685

Query: 720  K-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
               K  +    E+ I G +  G ++  A  IF  +  F +YGF +SHAA++A++ Y +AW
Sbjct: 686  WKRKGGLGAFHEKLIDGMTNRGYTREFAERIFRQIEGFGEYGFPESHAASFALLVYVSAW 745

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR---- 834
            +K H P  FL A +           +  QDA +  +QI P  V     +  + +      
Sbjct: 746  LKCHEPAAFLCALLNSLPMGFYSASQLIQDAGRHGVQIKPVDVTISNWECILEEQEDKAL 805

Query: 835  ---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               +   L  +KG+G   A  I+EA     F++ +D  +R     LN   + +L  A AL
Sbjct: 806  QPIVRLGLNRVKGMGLEAATRIVEAREIASFENPDDLANRAS---LNTAEVHALARADAL 862

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
                  R Q L S+ +                 ++  H       K TL           
Sbjct: 863  RTLSGHRRQTLWSVASHIT------------QRDLMRHAPA----KETLPVIPAAPEGEE 906

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +          HPL + +P L  M ++   E      G  +R   +V  +Q+  T  
Sbjct: 907  IIADYASTRLTLRRHPLALLRPTLASMNLRSAMELSDYPTGRLVRTTGIVTCRQRPGTAS 966

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G  + +VT  +         +
Sbjct: 967  G--VMFVTLEDETGITNVVLW 985


>gi|259503193|ref|ZP_05746095.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus antri
            DSM 16041]
 gi|259168850|gb|EEW53345.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus antri
            DSM 16041]
          Length = 1114

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 339/1028 (32%), Positives = 536/1028 (52%), Gaps = 49/1028 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V L+VHSSYSLL+    + +++         A+A+TD N L+ A++F   A  AG++P+
Sbjct: 3    YVPLEVHSSYSLLQSPTRIPDLVKAAKQRGYTALALTDENVLYGAVDFYNTARQAGLKPL 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G Q+   + D             +   + LL     GY+ L++L +R    +Q  +   
Sbjct: 63   LGLQIMASLGD----------VAGSQLKLTLLAKNERGYRNLMDLSTRQQTTNQRAEPAT 112

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I  + L  +  + +++L       +       S       +   K++ G  LY+ +  + 
Sbjct: 113  I--AELSPLLKDLVVIL--PVQLTVINLVRQGSD-----WIDPLKQIAGSSLYLGI--NL 161

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVT 249
              D    + + + A    + L AT    +L+  D  A   L A+     +     +   T
Sbjct: 162  QLDEVERASLQRFAQAAGVLLAATTPVDYLNASDLFAAKTLQAIGQGAQLTDLDAQVAAT 221

Query: 250  PDHYLKNRSEMVS--IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             DHYL  R ++      + L  A+ NT  IA +C+  L+  AP+LP +     +      
Sbjct: 222  GDHYLPARQQIEQAYQQAGLAAAIANTAAIADQCNVELKFQAPVLPHYQTPHGE----AP 277

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + L    +AGL+ R     +A GY A DYRQRLD EL VI RM F  YFLIV D + +A
Sbjct: 278  ADYLHQLCLAGLKER----PVAAGYSAADYRQRLDHELAVIHRMGFDDYFLIVWDVMNFA 333

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +  I   PGRGS AGS+ AYAL IT++DPL + LLFERFLNP+R  MPD D+D   +RR
Sbjct: 334  HRTKITTDPGRGSAAGSLVAYALAITEVDPLEYQLLFERFLNPERAQMPDIDLDIPDNRR 393

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV +KYGHERVAQIITFG+L AK  LRDV R   +   +   L   +P   +  +
Sbjct: 394  EEVLKYVHDKYGHERVAQIITFGTLAAKQVLRDVSRVFNLTKFETASLLDTLPKGGSFTL 453

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              QA+ +  R +      P + +L  ++Q+LEGL RH STHAAGIV+   PL ++VP+  
Sbjct: 454  E-QALGESQRLKNLLNDQPKLRQLFRVAQQLEGLPRHYSTHAAGIVLSAAPLHEIVPLQ- 511

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            +    L +TQF    +E  GL+K DFLGL+ L+++  ++  + QR  +  L  +   D  
Sbjct: 512  EGSEGLLMTQFPKDTVEALGLLKMDFLGLRNLSIMDNTIQMIRQRKPQFSLDQVSLADPA 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T G+FQ ES+G+R  L  + PD  EDI+A+ +LYRPGP++NI  +  RK G
Sbjct: 572  TLRLFQRGQTDGVFQFESAGIRNVLTALHPDQFEDIVAVNALYRPGPMENITHFIARKRG 631

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E I      + P+L  T G+++YQEQVMQ+A  ++G++L EAD+LRRAM KK K+ MD 
Sbjct: 632  QELIQLPDQSLAPILAPTYGILVYQEQVMQLASAMAGFTLGEADLLRRAMSKKKKQTMDS 691

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             + +F++GA   G    +A  +F+ + +FA+YGFN+SHA AY+ ++++ A++K HYP EF
Sbjct: 692  MRAKFMAGAQAKGYQPALASQVFDYIDQFANYGFNRSHAVAYSKMAFEMAYLKCHYPTEF 751

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A +  E +  +  +     A++  +++  P +N     F V D +IY+ L AIKG+  
Sbjct: 752  YTALLNAESNVTKLRQHVTN-AQKMGVKVNGPRINLSQAQFAVHDQQIYFGLTAIKGLRR 810

Query: 848  TTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 +++   A+ PF  + D  +R+  K     VL  L++AGA D  GY+R ++++SL 
Sbjct: 811  DFVADLLQEREANGPFKDIRDLINRLPDKWRKEEVLTPLIYAGACDGLGYNRAEMVESLP 870

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
            N+    + +                G  S + ++        + R   E  +LG Y SGH
Sbjct: 871  NLLSGIELLAT---------LPGLSGDPSLQSSISHRQEYPLTTRLAKENELLGVYLSGH 921

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG-SRIGWVTFSEPAK 1025
            P+  Y+ +  ++      E         + L       +   T+K    + +V+ S+ + 
Sbjct: 922  PVSQYRQLASRLRSGRITEL---RPNQRVTLIVFTNRVKVIHTKKDHRPMAFVSASDESG 978

Query: 1026 EYEANFFP 1033
              +   FP
Sbjct: 979  LVDVTVFP 986


>gi|325109561|ref|YP_004270629.1| error-prone DNA polymerase, DnaE-like protein [Planctomyces
            brasiliensis DSM 5305]
 gi|324969829|gb|ADY60607.1| error-prone DNA polymerase, DnaE-like protein [Planctomyces
            brasiliensis DSM 5305]
          Length = 1061

 Score =  585 bits (1509), Expect = e-164,   Method: Composition-based stats.
 Identities = 273/1035 (26%), Positives = 453/1035 (43%), Gaps = 69/1035 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L+  S++S LEGA   + ++++ A     A+AITD N+L   +     A  AGI  +
Sbjct: 31   FAELRCLSNFSFLEGASHPDELVERAAELGYRALAITDRNSLAGVVRAHVAAKQAGIHLL 90

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +L               TP  ++P IV+L     GY RL  L++R       K +  
Sbjct: 91   IGAEL---------------TPVDSLP-IVVLARNRAGYGRLCRLITRGRTR-APKGACE 133

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    + E  +E LI   G     +          V  + L  ++ +F D  Y  + RH 
Sbjct: 134  LTFQDIAE-HSEDLI---GCVPLSVRPTETPQEESVFRRELSRYRDVFQDSGYGLVHRHL 189

Query: 191  GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRV 248
               D       ++LA    L  VA+N+  +         DVL A+ H   V     R   
Sbjct: 190  SDRDDLSVHAQLKLAEGSGLTPVASNDVHYHLPNRRVLQDVLTAIRHRCPVDSLGFRMFP 249

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + YLK   +M ++F + PE +  T +IA +C+F L       P  +  E    Q    
Sbjct: 250  NGERYLKTPGQMRALFGNCPELVTRTADIANQCTFSLDELRYEYPEELCPE----QTTPM 305

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     G   R   G           RQ +++EL +IA +K+  YFL V D + +A+
Sbjct: 306  EHLRQLTWRGAAGRYPDG------TPDHVRQLIEYELALIAELKYEAYFLTVHDLVHFAR 359

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I    GRGS A S   + L +T +DP    +LFERF++ +R   PD DIDF  +RR+
Sbjct: 360  SRGIL-CQGRGSAANSAVCFCLGVTSVDPAYTQVLFERFISKERDEAPDIDIDFEHERRE 418

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  KYG ER     T  + + K+A+RDVG+AL +    ++ L             
Sbjct: 419  EVIQYIYQKYGRERAGMTATLITYRLKSAVRDVGKALGLSQDCLETLAAGFERSNELQTL 478

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             Q + +                L  +   + G  RH S H  G+V+    L ++VP+   
Sbjct: 479  SQRMNE----AGVSGGSTLGQFLRRLVVDILGFPRHLSQHTGGMVMTQGALCEVVPIENA 534

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHE 607
                  V +++   ++  G++K D L L  LT ++K  D L +   +   L+ +P +D +
Sbjct: 535  SMPGRTVVEWDKNDLDALGILKVDCLALGMLTAIRKGFDLLRESYGRDLSLATVPAEDPQ 594

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665
            TY ++    T+G+FQ+ES      L  ++P  + D++  V++ RPGPI   +V+    R+
Sbjct: 595  TYAMIQQADTMGVFQIESRAQMSMLPRLRPKEMYDLVIQVAIVRPGPIQGDMVHPYLRRR 654

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-E 724
            +G E     +  I  +L+ T GV I+QEQ M++A + +G++  EAD LRRAMG   K   
Sbjct: 655  DGLEAEEYPNEQIRDVLQRTLGVPIFQEQAMKLAVVAAGFTPGEADQLRRAMGAWRKSGV 714

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MD+  ++ ISG   +G  +  A  +F  +  F +YGF +SHAA++A++ Y +AW+K HYP
Sbjct: 715  MDRFHQKLISGMLAHGYGRDFAERLFNQIRGFGEYGFPESHAASFALLVYVSAWLKCHYP 774

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------NRIYYS 838
              FLAA +  +     +  +  +DARQ  +++ P  VN    +  +          +   
Sbjct: 775  DVFLAALLNSQPLGFYQPAQLVRDARQHGVEVRPVDVNFSDWNCTLEAQPQSSCQAVRLG 834

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
               I G+    A  I+ A     F ++++  +R         VL  L  + A      SR
Sbjct: 835  FRQITGLSQRDAEAIVAARKGGAFQTVDEIANRTGVAN---AVLSRLARSDAYSSLQLSR 891

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
               L                  +  + +      +       +   +  +     ++ R 
Sbjct: 892  RTALW----------------ESLPQRLSNSLLESQQPDAIPDALPIMPALTEVIHDYRH 935

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             G     HP+   +  L ++     +   +      +R+A +V+ +Q+  T KG  I ++
Sbjct: 936  SGLSLKDHPVRFLRKRLTQLQAVPMDTLGSYPVDRRVRVAGLVLLRQRPGTAKG--ITFM 993

Query: 1019 TFSEPAKEYEANFFP 1033
            T  +          P
Sbjct: 994  TLEDETGHANLIVHP 1008


>gi|257094455|ref|YP_003168096.1| DNA polymerase III subunit alpha [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
 gi|257046979|gb|ACV36167.1| DNA polymerase III, alpha subunit [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
          Length = 1042

 Score =  585 bits (1509), Expect = e-164,   Method: Composition-based stats.
 Identities = 262/1048 (25%), Positives = 435/1048 (41%), Gaps = 92/1048 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA     ++++  A    A+AITD  +L   +   + A   G+Q
Sbjct: 6    PFYAELHCCSNFSFLRGASHPEELVERAQALGYSALAITDEASLAGVVRAHKAARERGLQ 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG +  +                     +VLL     GY  L  L++        K  
Sbjct: 66   LIIGAEFRLTD------------ARQPGSRLVLLAQNRAGYGNLSALITLARRRSA-KGE 112

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF------FNSSQVAEKRLLTFKKLFGDRL 182
             R+  +  ++     L+ L    SG +              +  + +        F +R 
Sbjct: 113  YRLYRNDFEKP---DLVAL---RSGALPDCLALWIADADADTDASAEEGRWLASRFPNRS 166

Query: 183  YVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++ ++ H    D  R + +++LA    LP VA  +            D L A+   T + 
Sbjct: 167  WLAVELHSGPDDAARLATLLELAKASGLPAVAAGDVHMHLRARRPLQDTLTAIRLYTTLF 226

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                     +     R+ +        E L  T+ +A RC F L       P  +  +  
Sbjct: 227  AAGHALF-ANGERHLRTRLRLARIYPAELLAATLLVAARCHFSLDELRYEYPDEMVPDG- 284

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               +     LR +   GL  R               R R++ EL +I  + +  YFL V 
Sbjct: 285  ---QTPATFLRAEVTEGLRRRYPD------VVPPGVRARVEHELALINELAYEPYFLTVY 335

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +A+  +I    GRGS A S   Y L IT++DP R +LLFERF++ +R   PD D+D
Sbjct: 336  DIVNFARSRHIL-CQGRGSAANSAVCYCLGITEVDPARSNLLFERFISRERGEPPDIDVD 394

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+EVI+Y+  KYG ER A      + + + ALRDVGRAL    +Q+D L   +  
Sbjct: 395  FEHERREEVIQYLYAKYGRERAALTAAVVTYRTRGALRDVGRALGFGSAQIDALTASLAW 454

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                      +    R      A P V + L ++  L G  RH S H  G VI   PL++
Sbjct: 455  WDKRDQLPGRL----RAVGLDPAAPRVAKWLALADALRGFPRHLSQHVGGFVISRGPLAR 510

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVP+         V Q++   ++  GL+K D L L  L+ + ++LD +  R     L  +
Sbjct: 511  LVPIENAAMPARTVIQWDKDDLDTLGLLKIDVLALGMLSAIHRALDLVGCR-----LPEV 565

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P +D   Y ++    T+G+FQ+ES      L  ++P    D++  V+L RPGPI   +V+
Sbjct: 566  PAEDPAVYDMICAADTVGVFQIESRAQMAMLPRLRPRNFYDLVIEVALVRPGPIQGDMVH 625

Query: 662  N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                R++G+E+I  + P I  +L+ T GV I+QEQVMQ+A + +G++  EAD LRRAM  
Sbjct: 626  PYLRRRHGRERIEPMRPEIAAVLERTCGVPIFQEQVMQLAVVAAGFTPGEADQLRRAMAA 685

Query: 720  K-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
               K  +   +E+ I+G  + G  +  A  IF  +  F +YGF +SHAA++A++ Y +AW
Sbjct: 686  WRRKGGLGPFEEKLITGMRQRGHDEAFAKRIFAQIQGFGEYGFPESHAASFALLVYVSAW 745

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------ 832
            +K H+P  FL A +  +      + +  QDAR+  +++ P +V+       +        
Sbjct: 746  LKRHHPAAFLCALLNSQPLGFYSLSQLVQDARRHGVEVRPATVSASGWKALLESAAPAIA 805

Query: 833  ---NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                 +   LA+I G+   TA  ++EA    PF ++ +  +R                  
Sbjct: 806  AGGPAVRLGLASIVGLSQATAVRLLEARKQGPFANIAELAARARLT-------------- 851

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKN------RTNKHENIFAHEKGTFSDKITLEKF 943
                    R   L +  +         +             ++ +      +    L + 
Sbjct: 852  -------HRDLDLLAAADALASLSGHRRQAAWAAAGVAVQLDLLSG----NAPPEDLAEL 900

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
            ++ +       +          HPL + +  L         +          R A +V  
Sbjct: 901  AIPSEGEDLIADYASTRLTLGRHPLALLRERLSAQRFVSASQLQRAPDRQLARAAGIVTC 960

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +Q+  T  G  I +VT  +         
Sbjct: 961  RQRPGTASG--IVFVTLEDETGLANIVV 986


>gi|81428645|ref|YP_395645.1| DNA-directed DNA polymerase III, alpha subunit [Lactobacillus sakei
            subsp. sakei 23K]
 gi|78610287|emb|CAI55336.1| DNA-directed DNA polymerase III, alpha subunit [Lactobacillus sakei
            subsp. sakei 23K]
          Length = 1110

 Score =  585 bits (1508), Expect = e-164,   Method: Composition-based stats.
 Identities = 336/1027 (32%), Positives = 531/1027 (51%), Gaps = 46/1027 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV LQV S+Y+LLE    + +++    A    ++A+TD N ++  ++F + A AA I+P
Sbjct: 2    AFVQLQVKSTYTLLESTTKITDLVTAAKARGYQSLALTDKNVVYGLVDFYKAAKAADIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G  +++           G         ++LL     GYQ ++++ +++    +     
Sbjct: 62   LLGITIEV----------GGLIQTDERFPLILLAKNLTGYQNILKISTKIMTQSE----- 106

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
             +    +Q +  + L+++T    G + R    N +  A+  +   K +   D LY+ +  
Sbjct: 107  LVPFEAVQSLLQQ-LVVITPSQDGELVRLLLQNDATAAQTYIERLKAVVDADSLYLGISA 165

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +   R R   + QL+    +PLVA  +  +L  ED  A  VL  +   T V+ +     
Sbjct: 166  KQAASRQRVP-LGQLSQQTAVPLVALGDVRYLEPEDAFAVQVLQHIKAGTQVNLQTPQAP 224

Query: 249  TPDHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                    +    +  +  L EA+ NT +IA +C   L      LP+F         +  
Sbjct: 225  GGYFLEDVQQATAAFEALQLAEAVANTQKIAAQCQVDLSFKRAQLPQFETPAG----QSA 280

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+ ++ AGL     Q         + Y+ RLD+EL VI  M F+ YFLIVAD +Q+A
Sbjct: 281  ATYLKQQSQAGL-----QARFKTQPIPETYQTRLDYELQVINEMGFADYFLIVADVMQYA 335

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             + NI  GPGRGS AG++ AYAL ITD+DP+R+ LLFERFLNP+R +MPD D+D   +RR
Sbjct: 336  HQQNIMTGPGRGSAAGALVAYALRITDVDPIRYQLLFERFLNPNRANMPDIDLDIPDNRR 395

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DEV+ YV  KYG   +AQIITFG+L AK AL+DVGR   +   ++    K IPN     +
Sbjct: 396  DEVLDYVYQKYGQNHMAQIITFGTLAAKMALKDVGRVFGLSQFEMSAWSKAIPNVLKITL 455

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A      F+           L E +Q++EGL RH STHAAGIV+   PL++ V +  
Sbjct: 456  -QEAYDQSQAFKNLVADSQQNRLLFETAQRIEGLPRHYSTHAAGIVLSQAPLTETVALQ- 513

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDH 606
                ++ +TQ  M  +E+ GL+K DFLGL+ L +L   +     Q G   +   IP DD 
Sbjct: 514  SGGDEIELTQLPMGNVEELGLLKIDFLGLRNLGILANIVKLVSQQTGQPFNPQNIPLDDP 573

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T GIFQ ES+G++  L  ++P   EDI+A  +LYRPGP++NI  + +RK+
Sbjct: 574  ATLALFQQGDTNGIFQFESTGIKNVLRRLKPTSFEDIVATDALYRPGPMENIDTFIDRKS 633

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            GK  +      +  +L+ T G+++YQEQVMQ A  + G++L EAD+LRRAM KK K  +D
Sbjct: 634  GKVPVTYPDDSLAEILQPTYGILVYQEQVMQAASKMGGFTLGEADILRRAMSKKKKAVID 693

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
              + +FI GA   G ++  A  +++ + +FA+YGFN+SHA AY+ I++  A++K H P  
Sbjct: 694  ASRTKFIEGALALGHTEQAATTVYDYIEQFANYGFNRSHAVAYSKIAFWLAYLKVHQPEA 753

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F AA +   ++   K K +  +A++  + ++PP +N     FKV D  I + L +IKG+ 
Sbjct: 754  FFAAVLNAVLNQGTKTKTYLAEAKKRQLSVLPPDINLSQRYFKVTDAGIIFGLYSIKGLR 813

Query: 847  TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I+ E     PF S+  F  R+D+K L +  L +L+++GA D F  +R  LL +L
Sbjct: 814  RDFVAAILDEHQTGGPFKSVLQFLQRLDAKYLKKEALVALIYSGAFDQFNPNRNALLMNL 873

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D++    +    N      ++F             +  S    + R + E   LG Y SG
Sbjct: 874  DDLLDSVKLAGDN-----MSLFEIL------APKEKTVSNLTLTERLDKEAEYLGAYLSG 922

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP++ Y+ + R   +    +        N+RL   V   +  +T+KG ++ +VT  +   
Sbjct: 923  HPVEKYERVRRYYHVPEVSDLAP---NQNVRLVLFVRRIKVIRTKKGEQMAFVTGQDATG 979

Query: 1026 EYEANFF 1032
            E     F
Sbjct: 980  EISVTLF 986


>gi|254294846|ref|YP_003060869.1| DNA polymerase III subunit alpha [Hirschia baltica ATCC 49814]
 gi|254043377|gb|ACT60172.1| DNA polymerase III, alpha subunit [Hirschia baltica ATCC 49814]
          Length = 1096

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 263/1056 (24%), Positives = 449/1056 (42%), Gaps = 88/1056 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P +  L V +++S L GA      + +       AI I D N L   +     A   G+
Sbjct: 10   TPQYAELAVTTNFSFLRGASHAEEFVAQAKNLGLSAIGIADRNTLAGVVRAHVAAKEHGV 69

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + +IG +LD+                    S++   +    Y RL  L+S   +    K 
Sbjct: 70   RLLIGARLDLTDG----------------ISLLCYPTDRAAYGRLSHLLSDGKMR-APKG 112

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL----- 182
               I L  +       + ++                  V E++L    + F   L     
Sbjct: 113  ECHISLENVIAYADGQVFIVIPPMQPD----------AVFEEKLQILMEKFASSLEGSSP 162

Query: 183  ------YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
                  Y+ L   + G +R R +Q+  LA  + LPL+ATNN L+         D+L  + 
Sbjct: 163  SPDKKIYMALIHQYGGKNRERLAQIAALASKYNLPLIATNNVLYHVSSRRPLQDILTCIR 222

Query: 236  HS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
               ++           + +LK+ SEMV +F    EA+E+T +I   C F L       P 
Sbjct: 223  EHVSLEDAGYLLEPNAERHLKSPSEMVRLFHGFKEAIEHTQKIVEACQFSLDELRYEYPD 282

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                      K  +  L + A  G E R  +G        +  ++ L++EL +I  +  +
Sbjct: 283  EPVPRG----KTPQEHLIDIAWKGAEWRYPEGV------PEKVQKSLNYELGLIGELHVA 332

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFL V D ++WA++  I    GRGS A S   Y L IT +DP    LLF+RFL+ +R  
Sbjct: 333  QYFLTVHDIVKWAREQEIL-CQGRGSAANSAVCYCLGITSVDPKVNDLLFDRFLSRERKE 391

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF  +RR+EVI+YV  +YG  R A   T  S + ++A+R+V +A  +       
Sbjct: 392  PPDIDVDFEHERREEVIQYVYERYGRHRAALTATVISYRPRSAVREVCKAFGLSEDVATA 451

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            L K         +S +   +          + ++ R+L  +++L G  RH S H  G V+
Sbjct: 452  LAKTNWGAYGKTISDKQAGES----GLDPRNETIQRVLHFTRQLIGFPRHLSQHVGGFVL 507

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRG 593
               PL + VP+      +    +++   I+  G++K D L L  L+ ++K        +G
Sbjct: 508  TQGPLVETVPIGNAAMDERTFIEWDKDDIDALGIMKVDILALGMLSCIRKCFDMLRLYKG 567

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            ++ +L+ +P DD   Y +L    ++G+FQ+ES      L  ++P    D++  V++ RPG
Sbjct: 568  LEYNLATVPQDDPAVYDMLCKADSVGVFQVESRAQMSMLPRLRPRVFYDLVIEVAIVRPG 627

Query: 654  PIDNIVVYNNRKNGKE--KIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLS 703
            PI   +V+   +  K    +    P         ++ +LK T GV ++QEQ MQ+A   +
Sbjct: 628  PIQGDMVHPYLRRRKRIETVRYPSPAPEHGPPDELENILKRTLGVPLFQEQAMQVAIDAA 687

Query: 704  GYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
             ++  EA+ LR+AM    +   M   +++FI+G +  G     A   F  +  F DYGF 
Sbjct: 688  KFTPDEANGLRKAMATFRRNGTMGLYEDKFINGLTNRGYKPDFAQACFNQVKGFGDYGFP 747

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            +SHAA++A++ Y ++W+K H+P  F AA +  +        +  +DAR+ ++++ PP VN
Sbjct: 748  ESHAASFALLVYVSSWLKCHHPEVFCAAILNSQPMGFYAPAQLVRDAREHDVEVRPPDVN 807

Query: 823  TPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
                D  +         +   L  I+G+  T  + +M+   D  +   E    R     L
Sbjct: 808  YSDWDSLLEPKEDGTFAVRLGLRQIEGLSETHIQTLMDRRQDGYYT-PEILRQRT---GL 863

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
             R  LE L  A A    G  R + L ++    + A             +FA        +
Sbjct: 864  PRGALERLAAADAFRSMGLDRREALWAIRGQTQEAPSE----------LFACSATKEQGR 913

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
                K      S     +          HP+   +    +MGI+  +E      G+ + +
Sbjct: 914  EAEVKLPEMPMSEHVIQDYHATRLSLKAHPVSFLRERYSRMGIRTTKEIYELRSGSRVMV 973

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +V+ +Q+  T  G  + +VT  +         +P
Sbjct: 974  GGVVLVRQRPGTASG--VVFVTLEDETGVANLIVWP 1007


>gi|148543981|ref|YP_001271351.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus
            reuteri DSM 20016]
 gi|184153376|ref|YP_001841717.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri
            JCM 1112]
 gi|227364894|ref|ZP_03848939.1| DnaE family DNA polymerase III catalytic subunit [Lactobacillus
            reuteri MM2-3]
 gi|325682481|ref|ZP_08161998.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri
            MM4-1A]
 gi|148531015|gb|ABQ83014.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus
            reuteri DSM 20016]
 gi|183224720|dbj|BAG25237.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri
            JCM 1112]
 gi|227070041|gb|EEI08419.1| DnaE family DNA polymerase III catalytic subunit [Lactobacillus
            reuteri MM2-3]
 gi|324978320|gb|EGC15270.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri
            MM4-1A]
          Length = 1115

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 340/1031 (32%), Positives = 536/1031 (51%), Gaps = 53/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F  L V SSYSLL+    +++++         A+A+TD N L+ A+EF   A  AGI+P
Sbjct: 2    DFTPLDVKSSYSLLKSPTRISDLVTTAKERGYKALALTDENVLYGAVEFYNAAKKAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +L + + +             T   +V L     GYQ L++L +        K  +
Sbjct: 62   ILGLRLVVALNET----------DGTKLDLVFLAKNQRGYQHLMDLSTLQQTRKDKK--I 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + ++ +  +  E  I++       +               L        D + + +  +
Sbjct: 110  SLTIAQISPLLGELFIII--PPQSTVFSVLA--QPTSILTELANLGD--DDSVLLGV--N 161

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS---TVVSQKDRP 246
               D  +   + QL+    LPLV T+   +L+  D  A  VL A+         + +   
Sbjct: 162  SRLDDVQIDTLQQLSKQLSLPLVGTSPVDYLNANDLFASRVLQAIDAGVELKDPTIEAGR 221

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R     + K +         L  A + TVE+A  C+  LQ  AP+LP F  +     Q  
Sbjct: 222  RGQHYLHSKEQIVQDYNAKGLSAAAQKTVEVAALCNVELQFRAPVLPHFKNQAGIPSQ-- 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR+  + GL+ R     +A G   Q Y++RL  EL VI  M F  YFLIV D + +
Sbjct: 280  --QYLRSLCIQGLKKRR----VAPGKTIQQYQERLAMELKVIHEMGFDDYFLIVWDVMNF 333

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +  I   PGRGS AGS+ AYAL IT++DPL++ LLFERFLNP+R  MPD D+D   +R
Sbjct: 334  AHQQKITTDPGRGSAAGSLVAYALAITEVDPLQYDLLFERFLNPERAQMPDIDLDIPDNR 393

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEV++YV  KYGH+RVAQIITFG+L AK  +RDV R   +P   + RL   +P+     
Sbjct: 394  RDEVLQYVHQKYGHQRVAQIITFGTLAAKQVVRDVSRVFNLPRYDMQRLIDALPHGLHVT 453

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +    + +  + +     +P    L++++Q+LEGL RH S HAAGIV+ ++PL ++VP+ 
Sbjct: 454  LKDA-LKESQQLKNLLDDNPKFRLLIQVAQQLEGLPRHYSIHAAGIVLSEQPLHEIVPLQ 512

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D    L +TQF    +E  GL+K DFLGLK L+++  +L  + Q     DL  I F+D 
Sbjct: 513  -DGSDGLLMTQFAKDTVEALGLLKMDFLGLKNLSIMDNTLQMIRQEDPTFDLQKINFNDQ 571

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T GIFQ ESSG+R  L  + P   EDI+A+ +LYRPGP++NI  +  RK 
Sbjct: 572  LTLQLFQRGKTEGIFQFESSGIRNVLVNLHPTNFEDIVAVNALYRPGPMENIPHFTARKA 631

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            GKEKI    P ++ +L  T G+++YQEQVMQ+A +++G++L EAD+LRRAM KK K  M+
Sbjct: 632  GKEKITYPAPSLEKILGPTYGILVYQEQVMQLASVMAGFTLGEADLLRRAMSKKKKATME 691

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
              + +FI+GA+++G S  +A  +FE + +FA+YGFN+SHA AY++++++ A++K HYP  
Sbjct: 692  DMRTKFIAGATEHGYSAQVAHQVFEYIDRFANYGFNRSHAVAYSMMAFEMAYLKVHYPAA 751

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  A M  E  N+EK+K+   DA+QF ++I  P +N     F + D  +Y+  +AIKGV 
Sbjct: 752  FFTALMNAE-TNIEKLKRHVGDAKQFGVKISSPRINISESSFLLHDETVYFGFSAIKGVR 810

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I+E    +  F  L +F +R+  +   + ++E L+++GA D  GY+R +++ +L
Sbjct: 811  RDFIAAILEERQENGKFTDLRNFIARIPERWQKQELIEPLIYSGAFDKMGYNRAEMIDAL 870

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYF 963
              +    +            +FA         +   +++ +      R   E   LG Y 
Sbjct: 871  PKLISGIE------------LFAGFANFDDPALQTAIDQRNEFPLLTRLTKENEYLGVYL 918

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSE 1022
            SGHP+  Y  + +++      +       +   +  +    +   T++  R + +V  ++
Sbjct: 919  SGHPVTQYYQLGQQLHATKIADLYP---NSEATIIVLTNHVKTIYTKREHREMAFVNGTD 975

Query: 1023 PAKEYEANFFP 1033
                 +   FP
Sbjct: 976  ETGAIDITVFP 986


>gi|54022882|ref|YP_117124.1| error-prone DNA polymerase [Nocardia farcinica IFM 10152]
 gi|71151830|sp|Q5Z1D1|DNAE2_NOCFA RecName: Full=Error-prone DNA polymerase
 gi|54014390|dbj|BAD55760.1| putative DNA polymerase III alpha subunit [Nocardia farcinica IFM
            10152]
          Length = 1146

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 281/1069 (26%), Positives = 475/1069 (44%), Gaps = 85/1069 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS+YS L+GA     ++++       AIA+TD +  +  + F++ A   GI  +
Sbjct: 62   YAELHAHSAYSFLDGASQPEELVEEAVRLGLEAIALTDHDGFYGTVRFAEAAKEWGIATV 121

Query: 71   IGCQLDI-----DMQDNLKMTNQGK-------------------------TPFPTVPSIV 100
             G +L +       + + +   +G+                          P P  P ++
Sbjct: 122  FGAELSLGVARPAPRRSARKAARGRGRAVRYAATPEFEHAAAPDSAPRTGEPDPPGPHLL 181

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            +L    EGY+RL   ++  +L    K  +R  +  L         +LTG   G +  A  
Sbjct: 182  VLARGQEGYRRLSREIAAAHLAAGEKGVLRYDIDALTAAAGGHWHILTGCRKGHLRTALA 241

Query: 161  FN------SSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLV 212
             +          AE  L    + FG DR+ V L  H    D  R + ++ LA    LP++
Sbjct: 242  DDLAAGETGLPRAEAALRDLVERFGADRVSVELTHHGVPADDERNALLIALADRVGLPVL 301

Query: 213  ATNNSLFLSEEDYEAHDVLMAVA-HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            AT  + F   E       L A+    ++             +L++ +EM  +F+  P+A+
Sbjct: 302  ATTGAHFAGPEQRRRAMALAAIRARRSLDEMAGWLAPAGGAHLRSGAEMARLFAACPDAV 361

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
             N V ++R C+F L++ AP LP F   +  D    E + LR   + G   R         
Sbjct: 362  ANAVALSRECAFDLRLIAPQLPPFAVPDGHD----ENSWLRELVLRGAARRYG----PPH 413

Query: 332  YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
             +   YRQ L+ EL VIA + F GYFL+V D + + ++N I    GRGS A S   +A+ 
Sbjct: 414  ANPPAYRQ-LEHELEVIATLGFPGYFLVVHDIVSFCERNGIL-CQGRGSAANSAVCFAIG 471

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT++DP+   LLFERFL+P+R   PD DID   DRR+E I++V  +YG E  AQ+    +
Sbjct: 472  ITNVDPVANELLFERFLSPERDGPPDIDIDIESDRREEAIQHVYARYGREYAAQVANVIT 531

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
             + K+A+RD  +AL     Q D   K +                     A       +++
Sbjct: 532  YRGKSAVRDAAKALGFSPGQQDAWSKQVSRWTGVG--------------AETGTDIPEQV 577

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
            L ++  LEGL RH   H+ G+VI DRP++ + P+     +   V Q++       GL+KF
Sbjct: 578  LRLAADLEGLPRHMGIHSGGMVICDRPIADVCPVEWARMAGRSVLQWDKDDCAAVGLVKF 637

Query: 572  DFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            D LGL  L+ L   +D + +   V+V L  +   +   Y +L+   ++G+FQ+ES     
Sbjct: 638  DMLGLGMLSALHYMIDLVREHEGVEVRLHELDLKEPAVYEMLSRADSVGVFQVESRAQMA 697

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
             L  ++P    D++  V+L RPGPI   ++  Y  R+NG E +   HP ++  L  T GV
Sbjct: 698  TLPRLRPREFYDLVVEVALIRPGPIQGGSVHPYIRRRNGTEPVTYDHPALENSLGRTLGV 757

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER--FISGASKNGISKTIA 746
             ++QEQ+MQ+A  ++G++ +EAD LRRAMG K   E  ++ +   +   A  +GI+  +A
Sbjct: 758  PLFQEQLMQMAVDVAGFTAAEADQLRRAMGSKRSPERMRRLKERLYRGMAELHGITGEVA 817

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              I+E L  FA++GF +SH+ ++A + + +AW K H+P  F A  +  +       +   
Sbjct: 818  DRIYEKLYAFANFGFPESHSQSFAALVFYSAWFKLHHPAAFCAGLLRAQPMGFYSPQSLV 877

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDN--RIYYSLAAIKGVGTTTARHIMEAS-ADKPFD 863
             DAR+  + +  P VN    +  + +    +   LA ++ +G+  A  I+ A     P+ 
Sbjct: 878  ADARRHGVPVHGPDVNASLAEATLENGGREVRLGLAGVRHIGSELAERIVAARVEHGPYT 937

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDC-FGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
            S+ D   RV+   L     E+L  AGA D   G S  +        +   +         
Sbjct: 938  SVLDLTGRVE---LTVAQAEALATAGAFDSVTGPSGAE--------RSGGRRAALWAAGA 986

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
                 AH                 ++      +    G     +P +  +  + ++G+  
Sbjct: 987  AARERAHLLPGTGPAADAPALPGMSALELAAADVWATGISPGSYPTEFLRARMDELGVIP 1046

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                +    G+ + +   V  +Q+  T  G  + ++   +         
Sbjct: 1047 AGRLLEVRDGSRVLVGGAVTHRQRPATAAG--VTFLNLEDETGMVNVVC 1093


>gi|172064770|ref|YP_001812420.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MC40-6]
 gi|171998255|gb|ACB69171.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MC40-6]
          Length = 1049

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 279/1044 (26%), Positives = 461/1044 (44%), Gaps = 77/1044 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A AA + 
Sbjct: 10   PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAANMP 69

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG    +   D                    L    +GY  L E +S   +  + K +
Sbjct: 70   LIIGSHFRLTAADGAPALA-----------FTALAMNRDGYGNLCEFISLGRMRGK-KGT 117

Query: 129  VRICLSWLQEIGT---------EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             R+    ++             + + +L+           F  + Q  + ++  F ++FG
Sbjct: 118  YRLAPLDVEHPEAPFTHLRTLPDCIAILSPD---------FPANEQRLDAQVEWFARVFG 168

Query: 180  DRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            DR +V L  H R  D      V ++A  H +P+VAT+  L          DVL  +    
Sbjct: 169  DRAWVALTLHARAMDDIHRGVVERVAARHGVPVVATSWPLMHVRSRKPLQDVLTGIRVGR 228

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
             V  +    + P+     RS +         ALE TV +ARRC+F+L       P  +  
Sbjct: 229  PV-TECGYELAPNAERHLRSRLRLANLYPAGALEETVRVARRCTFLLDDLKYEYPDELVP 287

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
               D        LR +   G   R   G         D + +++ EL +IA +K+  YFL
Sbjct: 288  AGTD----ATTYLREQTYIGARRRFPAG------IPIDVQAQIEHELQLIADLKYEAYFL 337

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
             V D +Q+A++  I    GRGS A S   Y L +T++DP R S+LFERF++ +R   PD 
Sbjct: 338  TVYDIVQFAREQGIL-CQGRGSAANSSVCYCLGVTEVDPSRQSMLFERFISKERNEPPDI 396

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF   RR+EV++Y+  KYG +R A      + + ++ALR+ G+AL +  + VDR+ K 
Sbjct: 397  DVDFEHQRREEVMQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDPAIVDRVAKQ 456

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                 +    LQ  A+           P   +    + +L G  RH S H+ G VI    
Sbjct: 457  HHWFDSRADLLQRFAE----AGLDPEAPLNQQWAGFAAQLLGYPRHLSQHSGGFVISRGK 512

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVD 597
            L++LVP+      D  + Q++   IE  G++K D L L  L++++++LD +  +RG   +
Sbjct: 513  LTRLVPVENAAMEDRSIIQWDKDDIEALGILKIDVLALGMLSMVRRALDMISEKRGETFE 572

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  IP +D  TY +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGP+  
Sbjct: 573  LQDIPAEDMATYDMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIVRPGPVQG 632

Query: 658  IVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V+   +  +  E++      ++  L  T GV I+QEQVMQ+A L +G+S  EAD LRR
Sbjct: 633  GMVHPFLRRRQGLERVTFPSEGMEKALARTLGVPIFQEQVMQVAMLAAGFSAGEADQLRR 692

Query: 716  AMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AM     K  ++   ER ++G  + G  +  A +IF  +  F +YGF +SHAA++A++ Y
Sbjct: 693  AMAAWKRKGGLEPYHERLVNGMLERGYDREFAESIFAQIKGFGEYGFPESHAASFALLVY 752

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             +AW++ H P  FL A +  +        +  QDAR+  ++++P  VN    D  +    
Sbjct: 753  SSAWLRRHEPAVFLTALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWDSAIEGPT 812

Query: 835  ----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                +    + ++G+    A  I  A A + F  + D   R    +L+R  L+ L  A A
Sbjct: 813  TEAPVRLGFSLLRGMREDVAGRIELARAARSFVDVADLARRA---RLDRHDLQVLARANA 869

Query: 891  LDCF-GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            L    G +R   L            +     +                  +      +  
Sbjct: 870  LRSLAGGNRRAALWLAAAAVPDRDLLRATERDD----------------AVPALPQASEG 913

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 +   +GF    HPL + +  L    ++  E+      G   R   +V  +Q+  T
Sbjct: 914  KEIVTDYHAMGFTLGRHPLALLRERLALDRLQSAEQLQTLRSGQLARACGLVTVRQRPGT 973

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
              G  + ++T  +   +     +P
Sbjct: 974  ANG--VLFMTLEDETGQVNVILWP 995


>gi|154244758|ref|YP_001415716.1| DNA polymerase III, alpha subunit [Xanthobacter autotrophicus Py2]
 gi|154158843|gb|ABS66059.1| DNA polymerase III, alpha subunit [Xanthobacter autotrophicus Py2]
          Length = 1059

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 286/1051 (27%), Positives = 460/1051 (43%), Gaps = 91/1051 (8%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P++  LQV S +S L GA S   +    AA    A+A+TD N L   +   + A  AG
Sbjct: 2    SAPAYAELQVTSHFSFLRGASSAEELFATAAAMGIGALAVTDRNTLAGIVRAHEAAKEAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ IIGC+LD+                    S+++  +    Y RL  L+S       GK
Sbjct: 62   VRLIIGCRLDLVCGM----------------SVLVYPTDWAAYSRLCRLLSLGKGR-AGK 104

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK----RLLTFKKLFGDRL 182
                +    L   G EGLI++                  +A++    RL   +  FGDR 
Sbjct: 105  ARCHLEWDDLVAYG-EGLIVVLA--------------PDLADETCGLRLRRLRDAFGDRA 149

Query: 183  YVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ L  R R  D+ R  ++  LA    +P V TN+ LF         DV+ A+ H+  V 
Sbjct: 150  YLGLTLRRRPNDQMRLWELSTLAAGLGVPTVVTNDVLFHEPGRRILQDVVTAIRHNVTVD 209

Query: 242  Q-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                R     D YLK   EM  +F+  PEAL  T EIA RC F L       P       
Sbjct: 210  ALGIRRERHADRYLKAPGEMHRLFARWPEALARTREIADRCRFSLDELRYQYPEER---- 265

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            DD     +  L      G   R  +G        ++    L  EL +I ++ ++ YFL V
Sbjct: 266  DDPALSPQETLERLTWEGAASRYPEGV------PEEVTAALKHELALIGKLDYAPYFLTV 319

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
               +++A+   I    GRGS A S   Y L IT IDP R  LLFERF++ +R   PD D+
Sbjct: 320  NSIVRFARSRGILR-QGRGSAANSAVCYVLGITAIDPGRNDLLFERFVSEERREPPDIDV 378

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EVI++V   YG ER A   T    ++K ALRDVG+A+ +P   +  L   + 
Sbjct: 379  DFEHERREEVIQWVYEHYGRERAALTATVIRYRSKGALRDVGKAMGLPEDLIQTLSGQLW 438

Query: 481  NDPAHPVSLQAIAD---DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                  V+ Q + D   +   R  RL          ++ +L G  RH S H  G V+   
Sbjct: 439  GWSEAGVTEQQLRDLNLNPEDRRLRLTLE-------LAAQLRGAPRHLSQHPGGFVLTHD 491

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596
             L  LVP+         + +++   I+    +K D L L  L+ +++ LD LA+      
Sbjct: 492  RLDDLVPIEPAAMEGRQIIEWDKDDIDALRFMKVDVLALGMLSCMRRGLDLLAEHKDIRL 551

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL+ IP +D  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI 
Sbjct: 552  DLASIPAEDPRTYAMIRKADTLGTFQIESRAQMSMLPRLKPRTYYDLVVQVAIVRPGPIQ 611

Query: 657  NIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
              +V+    R+ G E++    P ++ +L +T GV ++QEQ M++A   +G++  EAD+LR
Sbjct: 612  GDMVHPYLRRREGLEEVDYPRPELEKVLGKTLGVPLFQEQAMRVAIECAGFTAGEADLLR 671

Query: 715  RAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            ++M        + K ++R ISG    G  +  A   F+ L  F  YGF +SHAA++A+I+
Sbjct: 672  KSMATFKHTGGVSKFRDRLISGMIARGYEEEFAARTFQQLEGFGSYGFPESHAASFALIA 731

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            Y +AW+K  +P  F AA +  +        +  +DAR+  +++ P  +N    D  +   
Sbjct: 732  YASAWLKCWHPDVFCAALLNAQPMGFYAPAQIVRDAREHGVEVRPVCINASRWDCTLEPT 791

Query: 834  ------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +   L  +KG+    A  ++ A  D+ F S++D   R     +    L+ +  
Sbjct: 792  GDESRFAVRLGLRMVKGLANAHAAAVVAARGDETFTSVDDLWRRA---GVPVAALDQIAA 848

Query: 888  AGALD-CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-- 944
            A      FG +R +   ++  ++                +FA         +        
Sbjct: 849  ADGFRPAFGLARREAQWAIKGLRDE-----------ELPLFAAASEREGQTVPELDEPAI 897

Query: 945  ---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                  +      +   +G     HP+   +  L +  I    E++A      +  A +V
Sbjct: 898  ALRAMPAGREVVEDYGHIGLSLRRHPVSFLREDLARRRIVSCAEAMAAPDQRWLEAAGIV 957

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +Q+  +  G  + ++T  +         +
Sbjct: 958  LVRQRPGSANG--VMFITLEDETGIANLVVW 986


>gi|304385057|ref|ZP_07367403.1| DNA-directed DNA polymerase III alpha subunit [Pediococcus
            acidilactici DSM 20284]
 gi|304329251|gb|EFL96471.1| DNA-directed DNA polymerase III alpha subunit [Pediococcus
            acidilactici DSM 20284]
          Length = 1127

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 301/1027 (29%), Positives = 520/1027 (50%), Gaps = 41/1027 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L V SSYSLL     +  ++         A+A+TD N ++ A+EF Q      ++P
Sbjct: 18   AFVPLHVLSSYSLLTSPTKIAELVKTAKDRGYSAMALTDNNTMYGAIEFYQACLKNDLKP 77

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G  + +D                   ++VLL     GY  L+ + S        K   
Sbjct: 78   IVGLTIWLD----------STRGIDNQFALVLLAKNINGYHNLLRISSAKMTEISAK--P 125

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQR 188
             +  + L+    + L+++       ++       +  A+  +  +++ +    L++ +  
Sbjct: 126  TLTFNDLRAYWKD-LVVIVPPVRSEVNELLERGMANDAQALIEEYQQSIDSPDLFLGI-- 182

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQKDRPR 247
            +          + Q+A    +  +   +  +L+EED+ A  VL  +     +   +   +
Sbjct: 183  NGQQSHVMRQTLTQMAQKAGIGCLPLPSVEYLNEEDHFATQVLRDIDSGKVLQHPELLAK 242

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               +++LK  +E V  +  L +A   T          L++   I+   + +     Q++ 
Sbjct: 243  GGGNNWLKPATEFVREYGQLGDAEMLTQLDRVVAGINLEIP--IVSPRLPQFATPNQQDS 300

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L       L         A     + Y+ RLD EL VI  M F+ YFLI+ D +Q+A
Sbjct: 301  FTYLTQLCQQALTQVKENVPDA-----ERYQARLDHELAVIKEMGFADYFLIIHDVVQFA 355

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +  I  GPGRGS AGS+ AY L IT +DPL++ LLFERFLNP+R  MPD D+D   D+R
Sbjct: 356  HQKQILTGPGRGSAAGSLVAYLLKITSVDPLQYGLLFERFLNPERAQMPDIDLDIPDDQR 415

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            + V++YV ++YGH+ V QIITFG+L AK A+RDV R      ++++++  LIPN     +
Sbjct: 416  EVVLQYVHDRYGHQHVGQIITFGTLAAKQAIRDVARVFGEMPNKINQISALIPNKLNITL 475

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A     R R+   + P    + E + +LEGL RH STHAAGIV+    L + VP+  
Sbjct: 476  KQAA-QTSHRLRDFIESSPKNRFMFETACRLEGLPRHFSTHAAGIVLSQDELVESVPVQ- 533

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D    + ++Q++  ++E+ GL+K DFLGL+ L+L+   L+ + +   + ++  I  +D +
Sbjct: 534  DGNEGMLMSQYSKNFVEQVGLLKMDFLGLRNLSLMNNILELVHRTEPQFEIEKIELNDPQ 593

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T G+FQ ES+G+R  L  + P     ++A+ +LYRPGP++NI  +  RK+ 
Sbjct: 594  TLQLFQRGDTSGVFQFESTGIRNVLRKVHPTNFGLVVAVNALYRPGPMENIDRFVKRKDH 653

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             E     + +++ +L ET G+++YQEQVM++A  + G SL +AD+LRRAM KK    +++
Sbjct: 654  LEPYRFPNQILERVLGETYGILVYQEQVMEVASAMGGLSLGQADLLRRAMSKKKHAVIEQ 713

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +  FI GA + G S+ IA  ++  +  FA+YGFNKSHA AY+ +++Q A++K HYP +F
Sbjct: 714  MRTNFIQGAVQKGYSEKIAQQVYRYIENFANYGFNKSHAVAYSKLAFQLAYLKAHYPGDF 773

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A +   + N  K K + Q+ ++  I  + P +N     +   + +I     AIKG+  
Sbjct: 774  YTALLNSVVGNDTKTKTYIQELKRLGIPTLAPDINQSSATYTYQNGQIRMGFTAIKGLRR 833

Query: 848  TTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               +H++        F +++D+  R+ ++ ++  V++ L+FAGALD FGY+R +L + L 
Sbjct: 834  DFIQHLLAERERGGQFKTVDDWLRRMGNQGIDEDVIDKLIFAGALDSFGYNRAELDEYLP 893

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             + K   +  +N      ++F     T   +  L          + + E+ +LG Y S H
Sbjct: 894  ELLKGITFSGQN-----VDLFQKLMPTIKSRPDLP------LDEKLDREEELLGTYVSAH 942

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P++ +  ++++      ++  A   G  +     + S +  +T+KG  + +   S+   E
Sbjct: 943  PVERFAELIKQRRFVPIQQFKA---GEKVTSIVYIRSFRSIRTKKGEPMAFAKISDQTDE 999

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 1000 CEAVIFP 1006


>gi|330990447|ref|ZP_08314406.1| Error-prone DNA polymerase 1 [Gluconacetobacter sp. SXCC-1]
 gi|329762484|gb|EGG78969.1| Error-prone DNA polymerase 1 [Gluconacetobacter sp. SXCC-1]
          Length = 1053

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 276/1038 (26%), Positives = 464/1038 (44%), Gaps = 74/1038 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++  LQV + +S L GA S   + ++  A    A+ I D N+L   ++    A   GI+ 
Sbjct: 2    AYAELQVTTYFSFLRGASSPIELFEQAKALGIEALGICDRNSLAGMVQAHVAAKETGIRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC+LD+                     +++  +    Y RL  L+S       GK   
Sbjct: 62   VVGCRLDLAD----------------FAPVLVYPTDRAAYARLCRLLSLGKAR-AGKGKC 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
             +    L   G EGL+++               +       L   ++ F DR  + L  R
Sbjct: 105  HLLWEDLVAWG-EGLLVI----------LLPDTADDACALHLRKLQEAFADRASMALTLR 153

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR- 247
             R  D+ R  ++  LA+   +P++ TN+ LF + +     DV+  + + T + +    R 
Sbjct: 154  RRPNDQMRLYELANLAHQARVPMIVTNDVLFHTHDRRILQDVVTCIRNHTTIDEAGFARE 213

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               D YLK  +EM  +FS  PEA++ T EI  RC F L   A         E     +  
Sbjct: 214  RHADRYLKPPAEMARLFSRYPEAIDRTREIVARCRFSLDDLAY----QYPDEVSVPGQSP 269

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L      G      +G         + R+ L  EL +I RM ++ YFL V   +++A
Sbjct: 270  QQALEALTWEGAAAAYPEG------IPPEVRKTLTHELALIGRMDYAPYFLTVHSIVRYA 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I    GRGS A S   Y L IT IDP R SLLFERF++ +R   PD D+DF   RR
Sbjct: 324  RSQGIL-CQGRGSAANSAVCYVLGITAIDPARTSLLFERFVSEERREPPDIDVDFEHARR 382

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            ++VI+++   YG    A        +AK ALRDVG+ + +P   +  L   I       +
Sbjct: 383  EQVIQWIYGHYGRNHAALTAVVTRYRAKGALRDVGKVMGLPEDLIRTLSSQIWGW-GRKL 441

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A+ +        L+D  +   L++++ L G+ RH S H  G V+    L +LVP+  
Sbjct: 442  DEDALDET----GIDLSDRRIRLTLDLARCLIGMPRHLSQHPGGFVLTHDRLDELVPIEP 497

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                   + +++   I+    +K D L L  LT ++K LD LA+       L  IP +D 
Sbjct: 498  AAMDARQIIEWDKDDIDVLKFMKVDVLALGMLTCMKKGLDLLAEHKGQHYTLQTIPAEDP 557

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 558  RTYAMIRKADTIGVFQIESRAQMSMLPRLRPRVFYDLVIEVAIVRPGPIQGDMVHPYLRR 617

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IKE 723
            + G+EK +   P ++ +L++T G+ ++QEQVMQ+A + +G+S SEAD LRRAM       
Sbjct: 618  RAGQEKEIYPTPELEKVLRKTLGIPLFQEQVMQVAMVCAGFSASEADQLRRAMATFKNTG 677

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             + + + R I G +  G   T A  IF+ L  F  YGF +SHAA++A+++Y ++WMK  +
Sbjct: 678  TVSRFRTRLIEGMTARGYPATFAERIFQQLEGFGSYGFPESHAASFAILAYSSSWMKCTH 737

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-------RIY 836
            P  FLAA +  +        +  +DAR+  ++I P  +N    D  +           + 
Sbjct: 738  PDVFLAALLNSQPMGFYAPAQLVRDAREHGVEIRPICINASRWDSTLEGPERNDGLFAVR 797

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CFG 895
              +  +KG+    A  I+ A  D+PF S++D   R   K +    L  L  A A     G
Sbjct: 798  LGMNLVKGLANEDAARIVAARGDRPFTSVDDLWRRAGVKGV---ALTHLAEADAFQPGLG 854

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R + L ++  ++                +FA        +                 +
Sbjct: 855  LARREALWAIKALRDE-----------PLPLFAAAAVMREAEELDVLLQPMRDGAEVARD 903

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     HP+   +  L + G+   ++ +     +++ +A +V+ +Q+  + +G  +
Sbjct: 904  YNRTGLTLRNHPVAFLRDDLSERGMVTCQQGLEARDRSSLSVAGLVLVRQRPGSAEG--V 961

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             ++T  +         +P
Sbjct: 962  VFMTLEDETAAINVIIWP 979


>gi|289425592|ref|ZP_06427368.1| error-prone DNA polymerase [Propionibacterium acnes SK187]
 gi|289153998|gb|EFD02687.1| error-prone DNA polymerase [Propionibacterium acnes SK187]
          Length = 1137

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 288/1077 (26%), Positives = 465/1077 (43%), Gaps = 105/1077 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HSSYS L+GA +  +++ +        +A+TD + L+  +  ++ A A G+  I
Sbjct: 60   YAELHCHSSYSFLDGASNPEDLVIRAVELGLSGLALTDHDGLYGVVRMAEAAEACGLSTI 119

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSV 129
            IG +L I + +      Q     P    +++L +  EGY+RL E ++  YL++ G K   
Sbjct: 120  IGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTDAYLVEGGRKGRP 174

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
               L  L E+      +LTG   G + +         AE  L     LFG D + V L  
Sbjct: 175  VHDLDHLAEVADGHWTVLTGCRKGAVRQGLVKGML-QAEAELRRLVDLFGIDNVLVELTD 233

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR   D      + +LA  H L  VAT  + +   E +E    L AV     + + D   
Sbjct: 234  HRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVRARRSLDEMDGWL 293

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                   L++ +EM  +FS   +A++NTV +A R +F L+   P LP     +       
Sbjct: 294  PPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLKSVRPRLPDQKVPDG----HT 349

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR+    G         +A        + RL  EL++I    F+GYFLIV+D +++
Sbjct: 350  PISWLRHLVEEGRRACYGDDPVA--------KDRLATELDLIEDRGFAGYFLIVSDIVEF 401

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I    GRGS A S   Y L IT +DP+ + L FERFL+  R   PD D+DF   R
Sbjct: 402  AQSQGIL-CQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREEEPDIDVDFDARR 460

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D   + +      P
Sbjct: 461  REEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDAWSRQMERRSVPP 520

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +                     D +  ++Q++ GL RH   H+AG+V+   P+ ++ P+ 
Sbjct: 521  LPHDP-----------DGPEIPDDVTTLAQQVMGLPRHLGIHSAGMVLTREPVGRICPIE 569

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                    V Q++ +     GL+KFD LGL  L+ L  S D ++Q       L+ IP ++
Sbjct: 570  PARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCGRFWTLASIPRNE 629

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNN 663
               Y +L    ++G+FQ+ES     AL  ++P C  D+   + L RPGP+    +  Y  
Sbjct: 630  PGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPGPVQGGAVHPYIR 689

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD+LRRAM  K+  
Sbjct: 690  RRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADADLLRRAMGSKRGV 749

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E +D  + +   G + NGI    A  I+  +  FA++GF +SHA ++A + Y +AW+K H
Sbjct: 750  ERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFAGLVYTSAWIKLH 809

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--------------- 827
            YP  FLAA +  +            DAR+  +    P V    V                
Sbjct: 810  YPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADLELLDACCEELGS 869

Query: 828  ---------------------FKVGDN----------RIYYSLAAIKGVGTTTARHIMEA 856
                                 F    +           +   L+ + G+   TA  I+E 
Sbjct: 870  EELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSGINIETATRIVEE 929

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
               + F SL+D   RVD        +E+L  AGA D    SR   L  +  I   A    
Sbjct: 930  RERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQIGQINGVAPGQL 986

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
              +      +                           ++ R  G   + HP+   +  L 
Sbjct: 987  DVQVVTQPPL----------------LPEPTQMELLGDDLRATGISTADHPVRQVRDALN 1030

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + G+   +          I +A +V  +Q+  T  G  + ++   +          P
Sbjct: 1031 RRGVVQVDRLDGVETRRRIEVAGVVTHRQRPGTAGG--VTFLNLEDETGLLNVIVTP 1085


>gi|50843116|ref|YP_056343.1| error-prone DNA polymerase [Propionibacterium acnes KPA171202]
 gi|295131169|ref|YP_003581832.1| DNA polymerase III, alpha subunit [Propionibacterium acnes SK137]
 gi|71151831|sp|Q6A780|DNAE2_PROAC RecName: Full=Error-prone DNA polymerase
 gi|50840718|gb|AAT83385.1| DNA polymerase III, alpha chain [Propionibacterium acnes KPA171202]
 gi|291376583|gb|ADE00438.1| DNA polymerase III, alpha subunit [Propionibacterium acnes SK137]
          Length = 1134

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 288/1077 (26%), Positives = 465/1077 (43%), Gaps = 105/1077 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HSSYS L+GA +  +++ +        +A+TD + L+  +  ++ A A G+  I
Sbjct: 57   YAELHCHSSYSFLDGASNPEDLVIRAVELGLSGLALTDHDGLYGVVRMAEAAEACGLSTI 116

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSV 129
            IG +L I + +      Q     P    +++L +  EGY+RL E ++  YL++ G K   
Sbjct: 117  IGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTDAYLVEGGRKGRP 171

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
               L  L E+      +LTG   G + +         AE  L     LFG D + V L  
Sbjct: 172  VHDLDHLAEVADGHWTVLTGCRKGAVRQGLVKGML-QAEAELRRLVDLFGIDNVLVELTD 230

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR   D      + +LA  H L  VAT  + +   E +E    L AV     + + D   
Sbjct: 231  HRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVRARRSLDEMDGWL 290

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                   L++ +EM  +FS   +A++NTV +A R +F L+   P LP     +       
Sbjct: 291  PPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLKSVRPRLPDQKVPDG----HT 346

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR+    G         +A        + RL  EL++I    F+GYFLIV+D +++
Sbjct: 347  PISWLRHLVEEGRRACYGDDPVA--------KDRLATELDLIEDRGFAGYFLIVSDIVEF 398

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I    GRGS A S   Y L IT +DP+ + L FERFL+  R   PD D+DF   R
Sbjct: 399  AQSQGIL-CQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREEEPDIDVDFDARR 457

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D   + +      P
Sbjct: 458  REEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDAWSRQMERRSVPP 517

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +                     D +  ++Q++ GL RH   H+AG+V+   P+ ++ P+ 
Sbjct: 518  LPHDP-----------DGPEIPDDVTTLAQQVMGLPRHLGIHSAGMVLTREPVGRICPIE 566

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                    V Q++ +     GL+KFD LGL  L+ L  S D ++Q       L+ IP ++
Sbjct: 567  PARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCGRFWTLASIPRNE 626

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNN 663
               Y +L    ++G+FQ+ES     AL  ++P C  D+   + L RPGP+    +  Y  
Sbjct: 627  PGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPGPVQGGAVHPYIR 686

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD+LRRAM  K+  
Sbjct: 687  RRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADADLLRRAMGSKRGV 746

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E +D  + +   G + NGI    A  I+  +  FA++GF +SHA ++A + Y +AW+K H
Sbjct: 747  ERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFAGLVYTSAWIKLH 806

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--------------- 827
            YP  FLAA +  +            DAR+  +    P V    V                
Sbjct: 807  YPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADLELLDACCEELGS 866

Query: 828  ---------------------FKVGDN----------RIYYSLAAIKGVGTTTARHIMEA 856
                                 F    +           +   L+ + G+   TA  I+E 
Sbjct: 867  EELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSGINIETATRIVEE 926

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
               + F SL+D   RVD        +E+L  AGA D    SR   L  +  I   A    
Sbjct: 927  RERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQIGQINGVAPGQL 983

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
              +      +                           ++ R  G   + HP+   +  L 
Sbjct: 984  DVQVVTQPPL----------------LPEPTQMELLGDDLRATGISTADHPVRQVRDALN 1027

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + G+   +          I +A +V  +Q+  T  G  + ++   +          P
Sbjct: 1028 RRGVVQVDRLDGVETRRRIEVAGVVTHRQRPGTAGG--VTFLNLEDETGLLNVIVTP 1082


>gi|289428491|ref|ZP_06430176.1| error-prone DNA polymerase [Propionibacterium acnes J165]
 gi|289158323|gb|EFD06541.1| error-prone DNA polymerase [Propionibacterium acnes J165]
          Length = 1134

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 289/1077 (26%), Positives = 466/1077 (43%), Gaps = 105/1077 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HSSYS L+GA +  +++ +        +A+TD + L+  +  ++ A A G+  I
Sbjct: 57   YAELHCHSSYSFLDGASNPEDLVIRAVELGLSGLALTDHDGLYGVVRMAEAAEACGLSTI 116

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSV 129
            IG +L I + +      Q     P    +++L +  EGY+RL E ++  YL++ G K   
Sbjct: 117  IGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTDAYLVEGGRKGRP 171

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
               L  L E+      +LTG   G + +         AE  L     LFG D + V L  
Sbjct: 172  VHDLDHLAEVADGHWTVLTGCRKGAVRQGLVKGML-QAEAELRRLVDLFGIDNVLVELTD 230

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR   D      + +LA  H L  VAT  + +   E +E    L AV     + + D   
Sbjct: 231  HRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVRARRSLDEMDGWL 290

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                   L++ +EM  +FS   +A++NTV +A R +F L+   P LP     +       
Sbjct: 291  PPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLKSVRPRLPDQKVPDG----HT 346

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR+    G         +A        + RL  EL++I    F+GYFLIV+D +++
Sbjct: 347  PISWLRHLVEEGRRACYGDDPVA--------KDRLATELDLIEDRGFAGYFLIVSDIVEF 398

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I    GRGS A S   YAL IT +DP+ + L FERFL+  R   PD D+DF   R
Sbjct: 399  AQSQGIL-CQGRGSAAASAVCYALGITVVDPVFYGLPFERFLSVLREEEPDIDVDFDARR 457

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D   + +      P
Sbjct: 458  REEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDAWSRQMERRSVPP 517

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +                     D +  ++Q++ GL RH   H+AG+V+   P+ ++ P+ 
Sbjct: 518  LPHDP-----------DGPEIPDDVTTLAQQVMGLPRHLGIHSAGMVLTREPVGRICPIE 566

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                    V Q++ +     GL+KFD LGL  L+ L  S D ++Q       L+ IP ++
Sbjct: 567  PARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCGRFWTLASIPRNE 626

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNN 663
               Y +L    ++G+FQ+ES     AL  ++P C  D+   + L RPGP+    +  Y  
Sbjct: 627  PGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPGPVQGGAVHPYIR 686

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD+LRRAM  K+  
Sbjct: 687  RRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADADLLRRAMGSKRGV 746

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E +D  + +   G + NGI    A  I+  +  FA++GF +SHA ++A + Y +AW+K H
Sbjct: 747  ERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFAGLVYTSAWIKLH 806

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--------------- 827
            YP  FLAA +  +            DAR+  +    P V    V                
Sbjct: 807  YPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADLELLDACCEELGS 866

Query: 828  ---------------------FKVGDN----------RIYYSLAAIKGVGTTTARHIMEA 856
                                 F    +           +   L+ + G+   TA  I+E 
Sbjct: 867  EELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSGINIETATRIVEE 926

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
               + F SL+D   RVD        +E+L  AGA D    SR   L  +  I   A    
Sbjct: 927  RERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQIGQINGVAPGQL 983

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
              +      +                           ++ R  G   + HP+   +  L 
Sbjct: 984  DVQVVTQPPL----------------LPEPTQMELLGDDLRATGISTADHPVRQVRDALN 1027

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + G+   +          I +A +V  +Q+  T  G  + ++   +          P
Sbjct: 1028 RRGVVQVDRLDGVETRRRIEVAGVVTHRQRPGTAGG--VTFLNLEDETGLLNVIVTP 1082


>gi|88856604|ref|ZP_01131261.1| DNA polymerase III subunit alpha [marine actinobacterium PHSC20C1]
 gi|88814258|gb|EAR24123.1| DNA polymerase III subunit alpha [marine actinobacterium PHSC20C1]
          Length = 1148

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 287/1079 (26%), Positives = 463/1079 (42%), Gaps = 110/1079 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HSS+S L+GA     + ++ A     A+A+TD + L+  +  ++ A   G+  +
Sbjct: 68   YAELHAHSSFSFLDGASMPEKMAEEAARLGLSALALTDHDGLYGIVRMAEAAAELGLPTL 127

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L + +        Q     P    +++L    EGY RL   ++R  L    K    
Sbjct: 128  FGAELSLGL-----TGPQAGNADPEGDHLLVLARKEEGYHRLALAITRAQLRGGEKGRPH 182

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ---------VAEKRLLTFKKLFG-D 180
              L+ L E+      +LTG   G + RA   +             A   L    +LFG +
Sbjct: 183  YELNELAELAGGHWFVLTGCRKGRVRRALNGSLPNSAPTSETMLAAGHELDRLSELFGSE 242

Query: 181  RLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             + V L  H    D      +  LA    L +VAT+N+ + +   +  H  + AV     
Sbjct: 243  AVIVELFDHGYPLDSAYNDALYSLAEERGLRVVATSNAHYATPRQHHLHSAISAVRARRS 302

Query: 240  VSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            + + D         +L++ +EM + F+  P A+  TVEIA   +F L+   P LP     
Sbjct: 303  LDEMDGWLPAAGTAHLRSGAEMATRFARYPGAVATTVEIAHEAAFELRQAKPALPDQDVP 362

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E         + LR    AG++             ++  R R+  EL+VI    F+GYFL
Sbjct: 363  EG----HTPASWLRELTWAGVK-------DRSIELSEQNRARIQRELDVIEEKHFAGYFL 411

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV D + +A+   I    GRGS A SV  Y L IT +DPLR+ L FERF++  R   PD 
Sbjct: 412  IVHDIVSFARGRGIL-CQGRGSAASSVVCYLLKITAVDPLRYKLPFERFISAMREEEPDI 470

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF  +RR+EVI+YV  +YG E  AQ+      + + A+RD+ +AL     Q D   K 
Sbjct: 471  DVDFDSERREEVIQYVFERYGRENAAQVANVIQYRPRFAVRDMAKALGYSSGQQDAWSKQ 530

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            +    +                + +     D ++E++Q++    RH   H+ G+V+  RP
Sbjct: 531  MERWGS--------------EVSGVDHDIPDAVVELAQQVMKFPRHLGIHSGGMVLTQRP 576

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVD 597
            + ++VP+    +    V Q++       GL+KFD LGL  L+ +Q S D      G + D
Sbjct: 577  VGEVVPIEHARKEKRTVVQWDKDDCAWMGLVKFDLLGLGILSAMQYSFDLVDEALGERWD 636

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID- 656
            L+ IP ++   Y  L     +G+FQ+ES      L  +QP     ++  ++L RPGPI  
Sbjct: 637  LATIPAEEQGVYDQLCRADAVGVFQVESRAQMGLLPRLQPREFYHLVVEIALVRPGPIQG 696

Query: 657  -NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              +  Y  RK G + I  +HP +   L+ T GV I+QEQ+MQIA  + G S  +AD+LRR
Sbjct: 697  GAVHPYVRRKMGADPITYLHPNLVEPLERTLGVPIFQEQLMQIAVAVGGCSADDADLLRR 756

Query: 716  AM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AM  K+  E +DK + +  +G + NGI    A  I+E +  FA +GF +SHA ++ ++ Y
Sbjct: 757  AMGSKRGIERIDKLRSKLYAGMASNGIVGADADRIYESIQAFAGFGFAESHALSFGLLVY 816

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM----------------- 817
             +AW++ HYP  FLAA +  +       +    DAR+  +Q+                  
Sbjct: 817  ASAWIRLHYPAAFLAALLRAQPMGFYSPQSLVADARRHGVQVRGPDIQRSGVFAVLEQLV 876

Query: 818  ------------------PPSVNTPCVDFKVGDNR------IYYSLAAIKGVGTTTARHI 853
                              P         F   D+R      +   L  +KG+G   A  I
Sbjct: 877  DGATAPTGDARCLDHEQPPIGPFDRTAHFDTDDHRRDGAFSVRLGLDEVKGIGAAVAEKI 936

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI-QKYA 912
            +       F S+ D   RV    L  + LE+L  AGA +  G +R + L +  N      
Sbjct: 937  VAERESGEFASMNDVVRRV---GLTTKQLEALAAAGAFEVLGLTRREALWNAGNASHDRE 993

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
            +++  +       +F+                      +   +    G     HP+   +
Sbjct: 994  EYLPNSMVVVQPPLFSLA----------------TEFDQLMADLWATGISPQSHPVAHVR 1037

Query: 973  PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
              L + G+    +      G  I +  +V  +Q+  T  G  I ++   +         
Sbjct: 1038 EALTQRGVLAAADLTVAESGRRIEIGGVVTHRQRPATASG--ITFMNIEDETGLINVIC 1094


>gi|194467803|ref|ZP_03073789.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23]
 gi|194452656|gb|EDX41554.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23]
          Length = 1115

 Score =  583 bits (1502), Expect = e-164,   Method: Composition-based stats.
 Identities = 341/1031 (33%), Positives = 536/1031 (51%), Gaps = 53/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F  L V SSYSLL+    +++++         A+A+TD N L+ A+EF   A  AGI+P
Sbjct: 2    DFTPLDVKSSYSLLKSPTRISDLVTTAKERGYKALALTDENVLYGAVEFYNAAKKAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +L + + +             T   +V L     GYQ L++L +        K  V
Sbjct: 62   ILGLRLVVALNET----------DGTKLDLVFLAKNQRGYQHLMDLSTLQQTRKDKK--V 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + ++ +  +  E  I++       +               L        D + + +  +
Sbjct: 110  PLTVTQISPLLDELFIII--PPQSTVFSVLA--QPTSILTELANLGD--DDSVLLGV--N 161

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS---TVVSQKDRP 246
               D  +   + QL+    LPLV T+   +L+  D  A  VL A+         + +   
Sbjct: 162  SRLDDVQIDTLQQLSKQLSLPLVGTSPVDYLNANDLFASRVLQAIDAGVELKDPTIEAGR 221

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R     Y K +         L  A + TVE+A  C+  LQ  AP+LP F  +        
Sbjct: 222  RGQHYLYSKEQVVQDYKAKGLSAAAQKTVEVATLCNVELQFRAPVLPHFKNQAG----IS 277

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  LR+  + GL+ R     +A G   Q Y++RL  EL VI  M F  YFLIV D + +
Sbjct: 278  SQQYLRSLCIQGLKKRR----VAPGKTIQQYQERLAMELKVIHEMGFDDYFLIVWDVMNF 333

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +  I   PGRGS AGS+ AYAL IT++DPL++ LLFERFLNP+R  MPD D+D   +R
Sbjct: 334  AHQQKITTDPGRGSAAGSLVAYALAITEVDPLQYDLLFERFLNPERAQMPDIDLDIPDNR 393

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEV++YV  KYGH+RVAQIITFG+L AK  +RDV R   +P   + RL   +P+     
Sbjct: 394  RDEVLQYVHQKYGHQRVAQIITFGTLAAKQVVRDVSRVFNLPRYDMQRLIDALPHGLHVT 453

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +    + +  + +     +P    L++++Q+LEGL RH S HAAGIV+ ++PL ++VP+ 
Sbjct: 454  LKDA-LKESQQLKNLLDDNPKFRLLIQVAQQLEGLPRHYSIHAAGIVLSEQPLHEVVPLQ 512

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D    L +TQF    +E  GL+K DFLGLK L+++  +L  + Q     DL  I F+D 
Sbjct: 513  -DGSDGLLMTQFAKDTVEALGLLKMDFLGLKNLSIMDNTLQMIRQEDPNFDLQKINFNDS 571

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T GIFQ ESSG+R  L  + P   EDI+A+ +LYRPGP++NI  +  RK 
Sbjct: 572  LTLQLFQRGKTEGIFQFESSGIRNVLVNLHPTNFEDIVAVNALYRPGPMENIPHFTARKA 631

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            GKEKI    P ++ +L  T G+++YQEQVMQ+A +++G++L EAD+LRRAM KK K  M+
Sbjct: 632  GKEKIAYPAPSLEKILGPTYGILVYQEQVMQLASVMAGFTLGEADLLRRAMSKKKKATME 691

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
              + +FI+GA+++G S  +A  +FE + +FA+YGFN+SHA AY++++++ A++K HYP  
Sbjct: 692  DMRTKFIAGATEHGYSAQVAHQVFEYIDRFANYGFNRSHAVAYSMMAFEMAYLKVHYPAA 751

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  A M  E  N+EK+K+   DA+QF ++I  P +N     F + D  +Y+  +AIKGV 
Sbjct: 752  FFTALMNAE-TNIEKLKRHVGDAKQFGVKISGPRINISESSFLLHDGTVYFGFSAIKGVR 810

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I+E    +  F  L +F +R+  +   + ++E L+++GA D  GY+R +++ +L
Sbjct: 811  RDFVAAILEERQENGKFTDLRNFITRIPERWQKQELIEPLIYSGAFDNMGYNRAEMIDAL 870

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYF 963
              +    +            +FA         +   +++ +      R   E   LG Y 
Sbjct: 871  PKLISGIE------------LFAGFANFDDPTLQTAIDQRNEFPLLTRLTKENEYLGVYL 918

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSE 1022
            SGHP+  Y  + +++      +       +   +  +    +   T++  R + +V  ++
Sbjct: 919  SGHPVTQYYQLGQQLHATKIADLYP---NSEATIIVLTNHVKTIYTKREHREMAFVNGTD 975

Query: 1023 PAKEYEANFFP 1033
                 +   FP
Sbjct: 976  ETGAVDITVFP 986


>gi|114320331|ref|YP_742014.1| DNA polymerase III, alpha subunit [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311913|sp|Q0A9G3|DNAE2_ALHEH RecName: Full=Error-prone DNA polymerase
 gi|114226725|gb|ABI56524.1| error-prone DNA polymerase, DnaE-like protein [Alkalilimnicola
            ehrlichii MLHE-1]
          Length = 1025

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 268/1033 (25%), Positives = 442/1033 (42%), Gaps = 76/1033 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L   S +S L GA     ++ + A     A+A+TD  ++  A+   Q A    +  
Sbjct: 4    DYAELHCLSCFSFLRGASQPAELVQRAAELGYRALALTDACSVAGAVRAHQAAKETDLHL 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G ++ I                   P +VLL      +  L  L+S        K   
Sbjct: 64   IHGSEIRIH----------------QGPLLVLLAPCRRAWAELCALISLGRSQ-ARKGDY 106

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
            R+    L+         L    +  +      + +    ++   F + FGDR +V +   
Sbjct: 107  RLEREQLEGT-------LPHCLALWVP-----DDAPHDAEQGRWFARHFGDRGHVAVALH 154

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            H   D  R  +++ LA    LP VA    L          D L A+ H   +       +
Sbjct: 155  HGPDDEARLQRLLALADRFRLPAVAAGGVLMHRRGRRALQDTLSALRHRRTL-AAMGTAL 213

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                    RS         P  L  +V +A +C F L       P  +    +       
Sbjct: 214  ECSGERHLRSLHSLARLYPPALLRRSVHLADQCRFSLDKLRYEYPAELVPAGE----TPA 269

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR   + G      QG             ++D EL +IA M +  +FL V D + +A+
Sbjct: 270  SYLRRLTLEGARRHWPQGM------PDKVAHQVDHELALIAEMGYEPFFLTVHDVVAFAR 323

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I    GRGS A S   + L IT +DP R SLLFERF++ +R   PD D+DF  +RR+
Sbjct: 324  RRGIL-CQGRGSSANSAVCFCLGITAVDPARQSLLFERFISKERGEPPDIDVDFEHERRE 382

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  KYG  R A   T    + ++ALRD GRAL +  + +DRL   I       V 
Sbjct: 383  EVIQYIYRKYGRHRAALAATVIRYRPRSALRDAGRALGLDAATIDRLAGSIQWWDGKRVD 442

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             + +    R       DP + R + I+ +L GL RH S H  G VI + P+S+LVP    
Sbjct: 443  PERL----REAGLNPDDPRLARTVAIAGQLLGLPRHLSQHVGGFVISEGPISELVPTENA 498

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607
              +   + Q++   +E  GL+K D L L  L+ ++++ D LA  RG ++ L+ +P +D  
Sbjct: 499  AMAGRTIIQWDKDDLEALGLLKVDVLALGMLSCIRRAFDLLAGFRGRRLTLADVPAEDPA 558

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665
             Y +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R+
Sbjct: 559  VYRMISDADTMGVFQIESRAQMAMLPRLRPQTFYDLVIEVAIVRPGPIQGDMVHPYLRRR 618

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IKEE 724
             G E +      +  +L  T GV I+QEQVMQ+A + +G++  EAD LRRAM     K  
Sbjct: 619  EGLEPVDYPSEAVRGVLARTLGVPIFQEQVMQLAVVAAGFTPGEADALRRAMAAWKRKGG 678

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +   +++ + G  +NG  +  A  +F  +  F +YGF +SHAA++A++ Y +AW+K H P
Sbjct: 679  LGPFRDKLLKGMRRNGYCEDYAERLFRQIQGFGEYGFPESHAASFALLVYVSAWLKCHEP 738

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYYSL 839
              F  A +  +        +  +DA +  ++I P  V     D         +  +   L
Sbjct: 739  ALFTCALLNSQPMGFYAPAQLLRDAERHGVEIRPVDVRHSDWDCSPEHRGDGEPALRLGL 798

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
              ++G+    A  ++ A   +PF  +++   R     L+RR LE+L  AGAL      R 
Sbjct: 799  RLVRGLNRRAADRLIAARGRRPFRDVQEMARRA---ALHRRDLETLAHAGALRGLAGHRR 855

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
                 +                    +F         +                 +   L
Sbjct: 856  AAWWQVLGA------------EAGLPVFEDLH----IEEAAPALDAPAEGEDLVADYTSL 899

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            GF    HPL + +P LR+  +    +  +T  G  +R A +V+++Q+  +  G  + ++T
Sbjct: 900  GFTLGRHPLALLRPQLRRRRLLTAADLASTGHGRLVRTAGLVINRQRPGSAGG--VTFLT 957

Query: 1020 FSEPAKEYEANFF 1032
              +   +     +
Sbjct: 958  LEDETGQINLVVW 970


>gi|270291308|ref|ZP_06197530.1| DNA polymerase III subunit alpha [Pediococcus acidilactici 7_4]
 gi|270280154|gb|EFA25990.1| DNA polymerase III subunit alpha [Pediococcus acidilactici 7_4]
          Length = 1112

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 301/1027 (29%), Positives = 520/1027 (50%), Gaps = 41/1027 (3%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FV L V SSYSLL     +  ++         A+A+TD N ++ A+EF Q      ++P
Sbjct: 3    AFVPLHVLSSYSLLTSPTKIAELVKTAKDRGYSAMALTDNNTMYGAIEFYQACLKNDLKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G  + +D                   ++VLL     GY  L+ + S        K   
Sbjct: 63   IVGLTIWLD----------STRGIDNQFALVLLAKNINGYHNLLRISSAKMTEISAK--P 110

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQR 188
             +  + L+    + L+++       ++       +  A+  +  +++ +    L++ +  
Sbjct: 111  TLTFNDLRAYWKD-LVVIVPPVRSEVNELLERGMANDAQALIEEYQQSIDSPDLFLGI-- 167

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQKDRPR 247
            +          + Q+A    +  +   +  +L+EED+ A  VL  +     +   +   +
Sbjct: 168  NGQQSHVMRQTLTQMAQKAGIGCLPLPSVEYLNEEDHFATQVLRDIDSGKVLQHPELLAK 227

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               +++LK  +E V  +  L +A   T          L++   I+   + +     Q++ 
Sbjct: 228  GGGNNWLKPATEFVREYGQLGDAEMLTQLDRVVAGINLEIP--IVSPRLPQFATPNQQDS 285

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L       L         A     + Y+ RLD EL VI  M F+ YFLI+ D +Q+A
Sbjct: 286  FTYLTQLCQQALTQLKENVPDA-----ERYQARLDHELAVIKEMGFADYFLIIHDVVQFA 340

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +  I  GPGRGS AGS+ AY L IT +DPL++ LLFERFLNP+R  MPD D+D   D+R
Sbjct: 341  HQKQILTGPGRGSAAGSLVAYLLKITSVDPLQYGLLFERFLNPERAQMPDIDLDIPDDQR 400

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            + V++YV ++YGH+ V QIITFG+L AK A+RDV R      ++++++  LIPN     +
Sbjct: 401  EVVLQYVHDRYGHQHVGQIITFGTLAAKQAIRDVARVFGEMPNKINQISALIPNKLNITL 460

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A     R R+   + P    + E + +LEGL RH STHAAGIV+    L + VP+  
Sbjct: 461  KQAA-QTSHRLRDFIESSPKNRFMFETACRLEGLPRHFSTHAAGIVLSQDELVESVPVQ- 518

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D    + ++Q++  ++E+ GL+K DFLGL+ L+L+   L+ + +   + ++  I  +D +
Sbjct: 519  DGNEGMLMSQYSKNFVEQVGLLKMDFLGLRNLSLMNNILELVHRTEPQFEIEKIELNDPQ 578

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T G+FQ ES+G+R  L  + P     ++A+ +LYRPGP++NI  +  RK+ 
Sbjct: 579  TLQLFQWGDTSGVFQFESTGIRNVLRKVHPTNFGLVVAVNALYRPGPMENIDRFVKRKDH 638

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             E     + +++ +L ET G+++YQEQVM++A  + G SL +AD+LRRAM KK    +++
Sbjct: 639  LEPYRFPNQILERVLGETYGILVYQEQVMEVASAMGGLSLGQADLLRRAMSKKKHAVIEQ 698

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +  FI GA + G S+ IA  ++  +  FA+YGFNKSHA AY+ +++Q A++K HYP +F
Sbjct: 699  MRTNFIQGAVQKGYSEKIAQQVYRYIENFANYGFNKSHAVAYSKLAFQLAYLKAHYPGDF 758

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A +   + N  K K + Q+ ++  I  + P +N     +   + +I     AIKG+  
Sbjct: 759  YTALLNSVVGNDTKTKTYIQELKRLGIPTLAPDINQSSATYTYQNGQIRMGFTAIKGLRR 818

Query: 848  TTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               +H++        F +++D+  R+ ++ ++  V++ L+FAGALD FGY+R +L + L 
Sbjct: 819  DFIQHLLAERERGGQFKTVDDWLRRMGNQGIDEDVIDKLIFAGALDSFGYNRAELDEYLP 878

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             + K   +  +N      ++F     T   +  L          + + E+ +LG Y S H
Sbjct: 879  ELLKGITFSGQN-----VDLFQKLMPTIKSRPDLP------LDEKLDREEELLGTYVSAH 927

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P++ +  ++++      ++  A   G  +     + S +  +T+KG  + +   S+   E
Sbjct: 928  PVERFAELIKQRRFVQIQQFKA---GEKVTSIVYIRSIRSIRTKKGEPMAFAKISDQTDE 984

Query: 1027 YEANFFP 1033
             EA  FP
Sbjct: 985  CEAVIFP 991


>gi|308234386|ref|ZP_07665123.1| DNA polymerase III, alpha subunit [Atopobium vaginae DSM 15829]
 gi|328944202|ref|ZP_08241666.1| DNA polymerase III [Atopobium vaginae DSM 15829]
 gi|327491121|gb|EGF22896.1| DNA polymerase III [Atopobium vaginae DSM 15829]
          Length = 1302

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 316/1052 (30%), Positives = 510/1052 (48%), Gaps = 96/1052 (9%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+PI GC+ ++     ++     K        + LLV  A GY  L++++S         
Sbjct: 125  IKPIFGCEANLIPDQCIEKGTPQKR-----YHLTLLVKNAVGYVNLMKMMSLA-ANQMMY 178

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               R   + L++   EGLI L+G + G I +         A      FK LFGD  Y+ +
Sbjct: 179  YKPRTTFAMLEKYH-EGLICLSGCAHGVIAQMIVTQQYDAARAWAQKFKALFGDDFYLEI 237

Query: 187  QRHR--------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            Q H           ++    ++VQL     + +VATN++ +  ++D E  D+L  +  +T
Sbjct: 238  QDHGVSLDSWNGMSEQMIAQRIVQLGKEEGIAVVATNDNHYFHQDDVETRDILSCIGANT 297

Query: 239  VVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             + +  +      + Y K+  +M ++F+ +PEA++ +V IA +CSF L      LP+F  
Sbjct: 298  HLDENYQSTLPGSEFYFKSEEQMRALFAWVPEAVDESVRIAAKCSFELDWTHMYLPKFP- 356

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                   +  E   R++   GL  +  +       +  + ++R ++E  VI    F+ YF
Sbjct: 357  --GLREGETSEERFRSECEQGLARKYGKQWQDVTINGVNVKERFEYEYGVICFKGFADYF 414

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV ++++WAK++ I VGPGRGS AG++ AYA+ IT  DPL   L+FERFL+ +R  MPD
Sbjct: 415  LIVQEYVRWAKEHGIGVGPGRGSAAGAIVAYAMDITAFDPLENGLMFERFLSLERTEMPD 474

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  +RR EV+++V+  YG +RV  +IT+ +++AK A+ D  R L  P +   +L K
Sbjct: 475  IDMDFDDERRLEVVQHVRELYGSDRVCHVITYSTIKAKQAINDAARVLGYPVATAQKLSK 534

Query: 478  LIPNDPAHPVSL-------QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            ++ +DP   +         +    +  F +A   +    R+++ ++ +EG+ R    HA 
Sbjct: 535  MVSSDPKTKLKFVLSKTEGKEDMYNPDFVDAYHNNGDEHRIIDAARSIEGIIRGEGVHAC 594

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
             I+I   P++  VP   D +  + +TQ+    +   GL+K DFLGL+TLT++ K+LD + 
Sbjct: 595  AILIAPTPVNDHVPTKLDTKGGVEITQYEGHSVADMGLLKMDFLGLRTLTVISKALDNIR 654

Query: 591  -----------------------QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
                                      + +D   IPF D   + L+ +  T G+FQ+ES G
Sbjct: 655  ASYPDLSKLDSLGDGVKACLKPGATCIDIDPQKIPFTDPRIFQLVGSGRTAGVFQIESEG 714

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685
            M   ++ M+P     I+AL++LYRPGP+   +V  Y NR NG+E +V     +  +L ET
Sbjct: 715  MTATIKNMKPKEFRQIVALIALYRPGPLGAGMVTSYINRMNGREPVVFYDDRLSDILDET 774

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADV-------------LRRAMGKKIKEEMDKQKERF 732
             G I+YQEQVMQI+  +SG+S  E+D              L   +        +   + +
Sbjct: 775  YGTIVYQEQVMQISVKMSGFSKGESDSKIRKPVAKKKIALLTSTIFHWENGRDETTYDHW 834

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            ++GAS NG  K +A  I++ + +FA Y FNKSH+A YA++  QTAW+K ++P E++A+ +
Sbjct: 835  MNGASANGYKKEVAQRIWDDVLEFASYAFNKSHSAGYAILVMQTAWLKAYFPREYMASVL 894

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            T  M    KI  +        I+I+PP +N    DF      I +  A I+GVG      
Sbjct: 895  TSYMGKTNKIVHYISACNHEGIKILPPDINESGRDFTATPQGIRFGFAGIRGVGENVGIA 954

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN---- 907
            IM+    + PF +L DF  RV+S + NRRV+E+L+ AGA D  GY R QL+  +D     
Sbjct: 955  IMQERKKNGPFANLHDFVKRVNSAQANRRVVEALIKAGAFDSCGYPRKQLMGFIDKNNPK 1014

Query: 908  -IQKYAQWVEKNRTNKHENIFA-----HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             I   A   EK+R+    ++F         G        +             E+ VLG 
Sbjct: 1015 NIIDEAARHEKDRSMGQLSLFDYFGTVEGSGFEEKIPPADPHDRWEDGFMLSQEREVLGI 1074

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVA-----------------TIRGNNIRLAAMVVS- 1003
            Y + HPL  Y+  LR+       E                       G  I LA M  + 
Sbjct: 1075 YVTDHPLRPYQVALRRSRDFTLSELEESKEVIDEQSGATHLEYKVPEGKTIHLAGM-TAT 1133

Query: 1004 --KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               Q++ T+ G ++  VT  +   +     FP
Sbjct: 1134 GLIQRRLTKTGKQMAIVTLEDMEGQIPLVVFP 1165



 Score = 85.6 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 30/57 (52%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
          +FVHL  HS +S+L+ + S+ N++D   A    A+A+TD   +F   +F        
Sbjct: 2  AFVHLHNHSFFSVLDASTSIQNMVDAAVAQHMHALALTDHAYMFGIPDFDLACRKYN 58


>gi|256394376|ref|YP_003115940.1| DNA polymerase III subunit alpha [Catenulispora acidiphila DSM 44928]
 gi|256360602|gb|ACU74099.1| DNA polymerase III, alpha subunit [Catenulispora acidiphila DSM
            44928]
          Length = 1127

 Score =  582 bits (1500), Expect = e-163,   Method: Composition-based stats.
 Identities = 284/1073 (26%), Positives = 464/1073 (43%), Gaps = 100/1073 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L  HS +S L+GA S   ++ + A      +A+TD +    A+++ Q A  A + 
Sbjct: 52   PPYAELHAHSHFSFLDGASSPAELVAEAARLGLHGLAVTDHDGFAGAMQYKQAAEDAELA 111

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             + G +L +++        +     P    +++L   AEGY+RL   + +  L  Q K  
Sbjct: 112  TVFGAELSLEL-----TAARTGVTDPAGSHLLVLARRAEGYRRLSAAIGKAQLAGQEKGK 166

Query: 129  VRICLSWLQEIGTEG-LIMLTGGSSGPIDRAFFFN-----SSQVAEKRLLTFKKLFGDR- 181
                L  L E   +G   +LTG   G + +A   +       + A+  L     LFGDR 
Sbjct: 167  PVYVLDDLAEAAADGDWTILTGCRKGTVRQALERHGLTEAGFEAADAELRKLMDLFGDRN 226

Query: 182  LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            + + L  H    D  R   + +LA  H LP VAT N  +    DY  H  + A+     +
Sbjct: 227  VLIELTDHDQPLDDARNRLLARLAARHGLPTVATGNVHYARPADYRLHTAMAALRARRTL 286

Query: 241  SQKDRPRVTPDHYLKN---RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            ++ D                        +   A+  + E+A   +F  +   P LP +  
Sbjct: 287  AEMDGWLPGAPTAYLRSGAEMLARFPVHEFGRAVVRSAELAADHAFDFKTINPQLPDYPV 346

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E       E + LR+    G   R      ++  + + Y Q + +EL+VI ++KF GYF
Sbjct: 347  PEG----HTEASWLRHLTYLGAAQRYG----SESENPKAYHQ-IAYELDVIEQLKFPGYF 397

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV D  ++ +   I    GRGS A S   +AL IT +D +R  L+FERFL+P R   PD
Sbjct: 398  LIVYDIAEFCRAQGIL-AQGRGSAANSAVCFALGITSVDSVRHGLVFERFLSPVRDGPPD 456

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+D    RR++VI++V  KYG +R A +    + +A+ ALRD  R L      VD    
Sbjct: 457  IDVDIEAGRREDVIQHVYAKYGRDRAAMVCNVITYRARLALRDSARVLGYSPGTVDAWAG 516

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
             I      P   + I +               ++LE++ +L+   RH   H  G+VI DR
Sbjct: 517  TIGPHEGVPDGSEEIPE---------------QVLELAGRLQRRPRHLGIHNGGMVIVDR 561

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV--- 594
            PL+Q+VP+    R    V Q++      AGL+KFD LGL  L  +  +LD +A+      
Sbjct: 562  PLAQVVPIEWARREGRTVLQWDKDDCAAAGLVKFDLLGLGMLGAIHDALDLIAEHHGTRL 621

Query: 595  --KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                       +    Y ++    T+G+FQ+ES      L  ++P C  D++  V+L RP
Sbjct: 622  GLHDLPQDGDPEADAVYAMIQDADTVGVFQIESRAQMVTLPRLKPKCFYDLVVEVALIRP 681

Query: 653  GPID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GPI    +  Y  R+NG E++   HP ++P+L+ T GV+++QEQ MQ+A   +G+S +EA
Sbjct: 682  GPIQGGAVHPYLRRRNGDEEVTYPHPTLEPVLERTLGVVLFQEQAMQMAIAAAGFSAAEA 741

Query: 711  DVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            D LR+AM  K+  E M + KER ++G ++ GI+     +I+  L  F+ YGF +SH+ + 
Sbjct: 742  DRLRQAMGSKRSPERMAELKERLMAGMAERGITPETGEDIYAKLHAFSGYGFPESHSVSM 801

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A I + + ++K +YP  F AA +  +            D R+  +Q+    VN       
Sbjct: 802  AYIVWCSCYLKRYYPAAFTAALLNNQPMGFYSPGSLVTDVRRHGVQVKRVDVNASGAKAT 861

Query: 830  ------------------------------VGDNRIYYSLAAIKGVGTTTARHIMEAS-A 858
                                          +    +   L++++ +G   A  ++    A
Sbjct: 862  LQSPDKPYGSGSGSGSGSGSDRTRHRHASPIAQPAVRLGLSSVRDLGDDAAEQVVAERTA 921

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
              PF  +EDF  R     L+R  LE+L  AGA  CFG  R + L +   +          
Sbjct: 922  GGPFTGVEDFIVRT---GLSRSTLEALATAGAFGCFGLDRREALWTAGAL--------AG 970

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
             T  H           +   T+ +            +    G     HP+   +  L   
Sbjct: 971  TTAGHLP-------GTAPGTTVPQLDPLTPVEVTLADLWATGTSPEDHPIGHLRWRLAMR 1023

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            G+    E       + +R+A +V  +Q+  T  G+   +++  +         
Sbjct: 1024 GVTPAVELRTARNRSLVRVAGLVTHRQRPPTAHGT--CFLSMEDETGLINVIC 1074


>gi|237810714|ref|YP_002895165.1| error-prone DNA polymerase [Burkholderia pseudomallei MSHR346]
 gi|237505761|gb|ACQ98079.1| error-prone DNA polymerase [Burkholderia pseudomallei MSHR346]
          Length = 1076

 Score =  582 bits (1500), Expect = e-163,   Method: Composition-based stats.
 Identities = 278/1053 (26%), Positives = 442/1053 (41%), Gaps = 67/1053 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D     + G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFGVTPDDAAPGHDPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 127

Query: 129  VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L         L  +    +  +        + V + +L  F  LFG+R  + L
Sbjct: 128  YRLTPRMLAAPPRALAHLRGVPDCFAILVPTY--PARADVLDAQLAWFDALFGERARLGL 185

Query: 187  -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             Q  R  D     QV        + +VA  +            D + A+        +  
Sbjct: 186  VQLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMP-IAECG 244

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     R+          +AL  T  +   C F L       P  I         
Sbjct: 245  HALAPNGEQHLRTRQRIAQLFPADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----H 300

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D ++
Sbjct: 301  TPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVK 354

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I    GRGS A SV  Y L +T+I+P + +LLFERFL+ +R   PD D+DF   
Sbjct: 355  YARSKDIL-CQGRGSAANSVVCYCLGVTEINPQQSTLLFERFLSRERGEPPDIDVDFEHQ 413

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K        
Sbjct: 414  RREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGS 473

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               L   A            P +    EI+ +L    RH S H+ G V+    L++LVP+
Sbjct: 474  RDLLARFASV----GLDPEVPLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPV 529

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDL 598
                     V Q++   +E  GL+K D L L  L+ L ++ D +               L
Sbjct: 530  ENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRL 589

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI   
Sbjct: 590  EHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGG 649

Query: 659  VVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
             V+   +  +        +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD
Sbjct: 650  AVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEAD 709

Query: 712  VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRRAM     K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A
Sbjct: 710  ALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFA 769

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  +
Sbjct: 770  KLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASL 829

Query: 831  G----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                          +   L+ ++G+G   AR I  A A  PF S+++   R     L RR
Sbjct: 830  EAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAACAAGPFASVDELARRA---CLERR 886

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             LE+L  A A      +R   L             +         + A      + +   
Sbjct: 887  DLEALAAANAFATLAGNRRDALW------------QAVAAAPERGLLAAAPIDEAVR--- 931

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                    +     + R +G   + HP+ + +P L    +           G   R   +
Sbjct: 932  PALGAPTEADDVFADYRTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGRLARACGL 991

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V ++Q   T KG  + +VT  +          P
Sbjct: 992  VTARQMPGTAKG--VLFVTLEDETGCVNVIVRP 1022


>gi|227544900|ref|ZP_03974949.1| possible DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|300910073|ref|ZP_07127533.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri
            SD2112]
 gi|227185112|gb|EEI65183.1| possible DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|300892721|gb|EFK86081.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus reuteri
            SD2112]
          Length = 1115

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 338/1031 (32%), Positives = 534/1031 (51%), Gaps = 53/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F  L V SSYSLL+    +++++         A+A+TD N L+ A+EF   A  AGI+P
Sbjct: 2    DFTPLDVKSSYSLLKSPTRISDLVTTAKERGYKALALTDENVLYGAVEFYNAAKKAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +L + + +             T   +V L     GYQ L++L +        K  +
Sbjct: 62   ILGLRLVVALNET----------DGTKLDLVFLAKNQRGYQHLMDLSTLQQTRKDKK--I 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + ++ +  +  E  I++       +               L        D + + +  +
Sbjct: 110  PLTIAQISSLLGELFIII--PPQSTVFSILA--QPTSILTELANLGD--DDSVLLGV--N 161

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS---TVVSQKDRP 246
               D  +   + QL+    LPLV T+   +L+  D  A  VL A+         + + R 
Sbjct: 162  SRLDDVQIDTLQQLSKQLSLPLVGTSPVDYLNANDLFASRVLQAIDAGVELKDPTIEARR 221

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R     + K +         L  A + TVE+A  C+  LQ  AP+LP F  +     Q  
Sbjct: 222  RGQHYLHSKEQIVQDYNAKGLSAAAQKTVEVAALCNVELQFRAPVLPHFKNQAGIPSQ-- 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR+  + GL+ R     +A G   Q Y++RL  EL VI  M F  YFLIV D + +
Sbjct: 280  --QYLRSLCIQGLKKRR----VAPGKTIQQYQERLAMELKVIHEMGFDDYFLIVWDVMNF 333

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +  I   PGRGS AGS+ AYAL IT++DPL++ LLFERFLNP+R  MPD D+D   +R
Sbjct: 334  AHQQKITTDPGRGSAAGSLVAYALAITEVDPLQYDLLFERFLNPERAQMPDIDLDIPDNR 393

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEV++YV  KYGH+RVAQIITFG+L AK  +RDV R   +P   + RL   +P+     
Sbjct: 394  RDEVLQYVHQKYGHQRVAQIITFGTLAAKQVVRDVSRVFNLPRYDMQRLIDALPHGLHVT 453

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +    + +  + +     +P    L++++Q+LEGL RH S HAAGIV+ ++PL ++VP+ 
Sbjct: 454  LKDA-LKESQQLKNLLDDNPKFRLLIQVAQQLEGLPRHYSIHAAGIVLSEQPLHEIVPLQ 512

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D    L +TQF    +E  GL+K DFLGLK L+++   L  + Q     DL  I F+D 
Sbjct: 513  -DGSDGLLMTQFAKDTVEALGLLKMDFLGLKNLSIMDNILQMIRQEDPNFDLQKINFNDP 571

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T GIFQ ESSG+R  L  + P   EDI+A+ +LYRPGP++NI  +  RK 
Sbjct: 572  LTLQLFQRGKTEGIFQFESSGIRNVLVNLHPTNFEDIVAVNALYRPGPMENISHFTARKA 631

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            GKEKI    P ++ +L  T G+++YQEQVMQ+A +++G++L EAD+LRRAM KK K  M+
Sbjct: 632  GKEKITYPAPSLEKILGPTYGILVYQEQVMQLASVMAGFTLGEADLLRRAMSKKKKATME 691

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
              + +FI+GA+++G S  +A  +FE + +FA+YGFN+SHA AY++++++ A++K +YP  
Sbjct: 692  DMRTKFIAGATEHGYSAQVAHQVFEYIDRFANYGFNRSHAVAYSMMAFEMAYLKVYYPAA 751

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  A M  E  N+EK+K+   DA+QF +++  P +N     F + D  +Y+  +AIKGV 
Sbjct: 752  FFTALMNAE-TNIEKLKRHVGDAKQFGVKVSGPRINISESSFLLHDGTVYFGFSAIKGVR 810

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I+E    +  F  L +F +R+  +   + ++E L+++GA D   Y+R +++ +L
Sbjct: 811  RDFVAAILEERQENGKFTDLRNFIARIPERWQKQELIEPLIYSGAFDKMEYNRAEMIDAL 870

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYF 963
              +    +            +FA         +   +++ +      R   E   LG Y 
Sbjct: 871  PKLISGIE------------LFAGFANFDDPALQTAIDQRNEFPLLTRLTKENEYLGVYL 918

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSE 1022
            SGHP+  Y  + +++              +   +  +    +   T++  R + +V  ++
Sbjct: 919  SGHPVTQYYQLGQQLHATKIANLYPH---SEATIIVLTNHVKTIYTKREHREMAFVNGTD 975

Query: 1023 PAKEYEANFFP 1033
                 +   FP
Sbjct: 976  ETGAIDITVFP 986


>gi|146345343|gb|ABQ23683.1| DNA polymerase III alpha subunit [Lactobacillus reuteri]
          Length = 1111

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 338/1031 (32%), Positives = 534/1031 (51%), Gaps = 53/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             F  L V SSYSLL+    +++++         A+A+TD N L+ A+EF   A  AGI+P
Sbjct: 2    DFTPLDVKSSYSLLKSPTRISDLVTTAKERGYKALALTDENVLYGAVEFYNAAKKAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +L + + +             T   +V L     GYQ L++L +        K  +
Sbjct: 62   ILGLRLVVALNET----------DGTKLDLVFLAKNQRGYQHLMDLSTLQQTRKDKK--I 109

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + ++ +  +  E  I++       +               L        D + + +  +
Sbjct: 110  PLTIAQISSLLGELFIII--PPQSTVFSILA--QPTSILTELANLGD--DDSVLLGV--N 161

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS---TVVSQKDRP 246
               D  +   + QL+    LPLV T+   +L+  D  A  VL A+         + + R 
Sbjct: 162  SRLDDVQIDTLQQLSKQLSLPLVGTSPVDYLNANDLFASRVLQAIDAGVELKDPTIEARR 221

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R     + K +         L  A + TVE+A  C+  LQ  AP+LP F  +     Q  
Sbjct: 222  RGQHYLHSKEQIVQDYNAKGLSAAAQKTVEVAALCNVELQFRAPVLPHFKNQAGIPSQ-- 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR+  + GL+ R     +A G   Q Y++RL  EL VI  M F  YFLIV D + +
Sbjct: 280  --QYLRSLCIQGLKKRR----VAPGKTIQQYQERLAMELKVIHEMGFDDYFLIVWDVMNF 333

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A +  I   PGRGS AGS+ AYAL IT++DPL++ LLFERFLNP+R  MPD D+D   +R
Sbjct: 334  AHQQKITTDPGRGSAAGSLVAYALAITEVDPLQYDLLFERFLNPERAQMPDIDLDIPDNR 393

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RDEV++YV  KYGH+RVAQIITFG+L AK  +RDV R   +P   + RL   +P+     
Sbjct: 394  RDEVLQYVHQKYGHQRVAQIITFGTLAAKQVVRDVSRVFNLPRYDMQRLIDALPHGLHVT 453

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +    + +  + +     +P    L++++Q+LEGL RH S HAAGIV+ ++PL ++VP+ 
Sbjct: 454  LKDA-LKESQQLKNLLDDNPKFRLLIQVAQQLEGLPRHYSIHAAGIVLSEQPLHEIVPLQ 512

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
             D    L +TQF    +E  GL+K DFLGLK L+++   L  + Q     DL  I F+D 
Sbjct: 513  -DGSDGLLMTQFAKDTVEALGLLKMDFLGLKNLSIMDNILQMIRQEDPNFDLQKINFNDP 571

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T GIFQ ESSG+R  L  + P   EDI+A+ +LYRPGP++NI  +  RK 
Sbjct: 572  LTLQLFQRGKTEGIFQFESSGIRNVLVNLHPTNFEDIVAVNALYRPGPMENISHFTARKA 631

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            GKEKI    P ++ +L  T G+++YQEQVMQ+A +++G++L EAD+LRRAM KK K  M+
Sbjct: 632  GKEKITYPAPSLEKILGPTYGILVYQEQVMQLASVMAGFTLGEADLLRRAMSKKKKATME 691

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
              + +FI+GA+++G S  +A  +FE + +FA+YGFN+SHA AY++++++ A++K +YP  
Sbjct: 692  DMRTKFIAGATEHGYSAQVAHQVFEYIDRFANYGFNRSHAVAYSMMAFEMAYLKVYYPAA 751

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  A M  E  N+EK+K+   DA+QF +++  P +N     F + D  +Y+  +AIKGV 
Sbjct: 752  FFTALMNAE-TNIEKLKRHVGDAKQFGVKVSGPRINISESSFLLHDGTVYFGFSAIKGVR 810

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I+E    +  F  L +F +R+  +   + ++E L+++GA D   Y+R +++ +L
Sbjct: 811  RDFVAAILEERQENGKFTDLRNFIARIPERWQKQELIEPLIYSGAFDKMEYNRAEMIDAL 870

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI--TLEKFSVENSSVRFENEQRVLGFYF 963
              +    +            +FA         +   +++ +      R   E   LG Y 
Sbjct: 871  PKLISGIE------------LFAGFANFDDPALQTAIDQRNEFPLLTRLTKENEYLGVYL 918

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWVTFSE 1022
            SGHP+  Y  + +++              +   +  +    +   T++  R + +V  ++
Sbjct: 919  SGHPVTQYYQLGQQLHATKIANLYPH---SEATIIVLTNHVKTIYTKREHREMAFVNGTD 975

Query: 1023 PAKEYEANFFP 1033
                 +   FP
Sbjct: 976  ETGAIDITVFP 986


>gi|167621850|ref|YP_001676635.1| DNA polymerase III, alpha subunit [Caulobacter sp. K31]
 gi|167351591|gb|ABZ74321.1| DNA polymerase III, alpha subunit [Caulobacter sp. K31]
          Length = 1053

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 269/1035 (25%), Positives = 454/1035 (43%), Gaps = 73/1035 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V LQ  S +SLL GA S   + D+       A+AI D N++   +     A A G++ I
Sbjct: 12   YVELQCASHFSLLRGASSPGELFDEAQRLGYRALAICDRNSVAGVVRAHIAAKATGVRLI 71

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC+L +                     +V+L +    Y RL  L+S       GK    
Sbjct: 72   IGCELVLRCGLT----------------LVVLPTDRAAYGRLCRLLSLGKSR-AGKGQCD 114

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RH 189
            + L  L     +GLI +    +             +   +L     +FG   ++ L  R 
Sbjct: 115  LGLEDLAA-HAQGLIAILVPDAPD----------DLCALQLKKVAAIFGVDAHLALTLRR 163

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
            R  D  R  Q+  +A    +  V TN  LF  +      DV+  +   T +      R  
Sbjct: 164  RPGDALRLHQLEAMARQAGVRPVVTNRVLFHEKGRRLLQDVVTCIREGTTIDDVGFKRDR 223

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              D YLK  SE+  + +  P+A+  +VEIARRC F L   +   P     E  +  +  +
Sbjct: 224  HADRYLKAPSEIQRLLAKHPDAVTASVEIARRCRFSLDELSYQYPH----EVSEPGRTPQ 279

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L      G   R   G  A      +  + L  EL +I  + ++ YFL V   +Q+A+
Sbjct: 280  ETLERLTWFGAAQRYPDGLPA------EVEKALAHELRLIGLLGYAPYFLTVNSIVQYAR 333

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              +I    GRGS A S   Y L +T IDP R  LLFERF++ +R   PD D+DF  +RR+
Sbjct: 334  GQDIL-CQGRGSAANSAVCYVLGVTSIDPERNDLLFERFVSQERNEPPDIDVDFEHERRE 392

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             V++++   YG  R A +      + + A+RDVG+ L +P      L   I +     + 
Sbjct: 393  TVMQWIFETYGRHRCALVAVVQRFRPRGAVRDVGKVLGLPEDMTKALSSQIWSFSREDIE 452

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                   +R     L+D  +   LE++Q L    RH S H  G V+ +  L +LVP+   
Sbjct: 453  ----ESHARDVGLDLSDRRLRLTLELAQLLLNTPRHFSQHPGGFVLTEDRLDELVPIEPA 508

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHE 607
               D  + +++   I++   +K D L L  LT L++ LD   A + +  DL+ IP +D  
Sbjct: 509  RMQDRQIIEWDKDDIDELKFMKVDVLALGMLTCLKRGLDLLAAHKDIHKDLATIPPEDPR 568

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665
            TY ++    TLG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R+
Sbjct: 569  TYAMIRKADTLGVFQIESRAQMVMLPRLKPRSFYDLVIEVAIVRPGPIQGDMVHPYLRRR 628

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-E 724
             GKEK+    P ++ +L +T GV ++QEQ M++A   +G++  EAD LRR+M        
Sbjct: 629  EGKEKVSYPKPELEKVLGKTLGVPLFQEQAMRVAIECAGFTPGEADQLRRSMATFKMTGG 688

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +   +++ + G    G  +  A   F  L  F  YGF +SHAA++A+++Y ++W+K H+P
Sbjct: 689  VSHFRQKLLGGMVARGYPQDFAEQTFSQLEGFGSYGFPESHAASFALLAYASSWLKCHHP 748

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------RIYYS 838
              F AA +  +     +  +  +DA +  +QI P  VN    D  +  +       +   
Sbjct: 749  DVFCAALLNSQPMGFYQPAQIVRDAVEHGVQIRPICVNASRWDCTLEPDGDTGRLAVRLG 808

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYS 897
            +  +KG+    A  ++ A  ++P+ S+++   R  +K     VL  L  A A     G +
Sbjct: 809  MRLVKGLADGDAAALVLARGEEPYRSIDEVWRRSGAKP---GVLGRLAEADAFLPSLGLA 865

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R +   ++  ++  A             +F     +  ++  +              +  
Sbjct: 866  RREAAWAIKALRDDA-----------LPLFDQPGASELNEPAV-ALKAMTEGREIVEDYS 913

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             +G     HPL + +  L ++      +      G  I+ A +V+ +Q   + KG  + +
Sbjct: 914  HVGLSLRRHPLALLRSDLTRLRRAPCRDVAQGRDGRFIQTAGLVLVRQMPGSAKG--VLF 971

Query: 1018 VTFSEPAKEYEANFF 1032
            +T  +         +
Sbjct: 972  MTLEDETGVANLVVW 986


>gi|159039006|ref|YP_001538259.1| error-prone DNA polymerase [Salinispora arenicola CNS-205]
 gi|157917841|gb|ABV99268.1| DNA polymerase III, alpha subunit [Salinispora arenicola CNS-205]
          Length = 1124

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 283/1052 (26%), Positives = 461/1052 (43%), Gaps = 81/1052 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  H+++S L+GA     + ++       A+A+TD +  +  + F++ A A  +  I
Sbjct: 74   YAELHTHTNFSFLDGASHPEELAEEATRLGLTALAVTDHDGFYGVVRFAEAARALHLPTI 133

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +D+            P P    ++LL    EGY RL   +SR  L    K    
Sbjct: 134  FGAELSLDLPG-----PPNGEPDPLGRHLLLLAHGHEGYARLAATISRAQLRGGEKGRPV 188

Query: 131  I-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
               L+ +     + +++LTG   G +  A        A + L     LFG + + V L  
Sbjct: 189  YGELAEVAAELRDHVLVLTGCRKGHVPAALLTEGVDAAARELDRLTALFGAETVAVELTD 248

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    D  R   + +LA    LP VATNN  + +         L AV     + + D   
Sbjct: 249  HGHPVDADRNDALAELADAAGLPTVATNNVHYATPGRRRLATTLAAVRARRSLDEIDGWL 308

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  +L++ +EM + F+  P A+    E     +F LQ+ AP LP +           
Sbjct: 309  PAAGTAHLRSGAEMAARFAAYPGAVARAAEFGAELAFDLQLVAPALPAYPVPSG----HT 364

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E + LR+    G   R          H + Y  +L+ ELN+I  + F GYFL+V D + +
Sbjct: 365  EMSWLRHLTARGARERYG----PPEAHPEAY-AQLEHELNMIEELGFPGYFLVVYDIVTF 419

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             ++ +I    GRGS A S   YAL IT++D +R  LLFERFL P+R   PD D+D    R
Sbjct: 420  CREQDIY-CQGRGSAANSAVCYALRITNVDAVRHRLLFERFLAPERDGPPDIDVDIESHR 478

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI++V  +YG E  AQ+    S + ++A+RDV +A      Q D   K +    +  
Sbjct: 479  REEVIQHVYARYGREHTAQVANVISYRPRSAVRDVAKAFGFSPGQQDAWSKQVDRWGSV- 537

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                             A+   + ++  +  ++   RH   H+ G+VI DRP+ ++ P+ 
Sbjct: 538  -------------AEVDAEGIPEPVVAYADAVQTFPRHLGIHSGGMVICDRPVIEVCPVE 584

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                    V Q++       GL+KFD LGL  L  L    D +  R   ++L  +  DD 
Sbjct: 585  WGRMPGRSVLQWDKDDCAAVGLVKFDLLGLGMLAALHHGYDMIGTR---LELGDMTLDDS 641

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664
            E Y +L     +G+FQ+ES      L  ++P C  D++  V+L RPGPI   ++  Y  R
Sbjct: 642  EVYDMLCRADAVGVFQVESRAQMATLPRLRPRCFYDLVVEVALIRPGPIQGGSVHPYIRR 701

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723
            KNG+E +   HPL+   L++T GV ++QEQ+MQ+A  L+G+  +EAD LRRAM  K+  E
Sbjct: 702  KNGQEPVTYPHPLMRNALEKTLGVPLFQEQLMQLAIDLAGFDAAEADQLRRAMGAKRSVE 761

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M +  +R  +G ++ GI+  +A +++  L  FA YGF +SHA ++A + Y ++W+K ++
Sbjct: 762  RMARIADRLYAGMAERGITGELADDVYRKLTAFASYGFPESHAMSFAYLVYASSWLKRYH 821

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN--------------------- 822
            P  FLAA +  +       +    DAR+  +++  P VN                     
Sbjct: 822  PAPFLAALLNAQPMGFYSPQTLVDDARRHGVEVRRPDVNASGAGAVLESTPNTRWGSQPG 881

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881
             P   + +G   +   L  ++ +G   A  I+    A   +  + D   R     L    
Sbjct: 882  EPPHAWGLGGPAVRLGLDGVRALGAEVAERIVAERTAHGLYQDMSDLARRA---GLTAAQ 938

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE+L  A A  CFG +R Q                    ++ + +     GT +      
Sbjct: 939  LEALATADAFACFGVTRRQ----------ALWAAGAAAQDRPDRLPGTVPGTVA-----P 983

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                  +  R   +    G     HP    +  L  +G    ++      G  IR+  +V
Sbjct: 984  TLPGMAAVDRLVADVWATGLSPESHPARFIRDQLDALGAVPIDQLARVEPGRRIRVGGIV 1043

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +Q+  T  G  + ++   +          P
Sbjct: 1044 THRQRPATAGG--VTFLNLEDETGMLNVTCSP 1073


>gi|220925004|ref|YP_002500306.1| DNA polymerase III subunit alpha [Methylobacterium nodulans ORS 2060]
 gi|219949611|gb|ACL60003.1| DNA polymerase III, alpha subunit [Methylobacterium nodulans ORS
            2060]
          Length = 1072

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 265/1041 (25%), Positives = 442/1041 (42%), Gaps = 75/1041 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V LQV + YS L GA S   +    A     A+ +TD +++   ++  + A A G + + 
Sbjct: 3    VELQVTTHYSFLRGASSPEELFTTAALLGLTALGVTDRHSVAGLVKAHEAARATGCRLVA 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+LD+             +      ++++  +    Y RL  L++       GK    +
Sbjct: 63   GCRLDL-------------SGPDQGTALLVYPTDRAAYGRLCRLLTLGK-ERAGKGGCTL 108

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHR 190
                + E  +EGLI +               S      RL   K +FG   +  L  R  
Sbjct: 109  DFGDVAEW-SEGLIAV----------LLTDKSDDALAARLGRLKGIFGRHSFCALTRRFG 157

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VT 249
              D  R   +  LA    +P+VAT + L+   E     DV+  +   T +      R   
Sbjct: 158  VNDHRRLEGIADLARAARVPIVATGDVLYHVPERRLMQDVVTCIRLGTTIEAAGFARERH 217

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               +L+  +E   +F+  PEA+E    IA  C F L       P    ++     +  + 
Sbjct: 218  AGRHLQPPAETARLFARHPEAVERAQAIAESCRFSLDDLTYTYPDETGEDG----RSAQE 273

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L    +AG   R   G        ++ R+++  EL++IA   ++ YFL V   +++A+ 
Sbjct: 274  RLEAMTLAGAAQRFPGG------IPENVREQIRHELDLIASKTYAPYFLTVEAIVRFARD 327

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A SV  + L IT IDP+R  LLFERF++ +R   PD D+DF  DRR+E
Sbjct: 328  QGIL-CQGRGSAANSVVCFCLGITAIDPVRLKLLFERFVSDNRDEPPDIDVDFEHDRREE 386

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI++V   YG  R A   T     A+ A+R+VG+ L +P      L +L+          
Sbjct: 387  VIQWVYATYGRHRAALTATVIRYGARGAVREVGKVLGVPEDVTGALARLVSGWSRDGAG- 445

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                 ++      L+D  +   L+I++ L G  RH   H  G V+    L +L P+    
Sbjct: 446  ---EREAEALNLNLSDRRLRLTLDIAKALIGTPRHLGQHPGGFVLTLDRLDELCPITPAT 502

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR----GVKVDLSLIPFDD 605
              +    +++   IE    +K D LGL  L  L+++   L +         D++ IP +D
Sbjct: 503  MENRQTIEWDKDDIEALKFMKVDVLGLGMLGCLRRAFALLKEHRGDENPPQDIAGIPPED 562

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
              TY ++    TLG+FQ+ES      L  MQP  + D+   V+L RPGPI   +V+    
Sbjct: 563  AATYAMIGKADTLGVFQIESRAQMAMLPRMQPKHLYDLTIEVALVRPGPIQGDMVHPYLR 622

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R+  +  +      +  +L+ T GV ++QEQ MQ+A + +G++ +EAD LRRAM      
Sbjct: 623  RRQNRSLVHYPSEALKSVLERTLGVPLFQEQAMQVAIVAAGFTAAEADGLRRAMATFKAN 682

Query: 724  -EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             ++   +++ I+G  +NG +   A   F  L  F  YGF +SHAA++A+++Y ++W+K H
Sbjct: 683  GKIGLYRDKLIAGMIRNGYTPDFAARTFRQLEGFGSYGFPESHAASFALLAYASSWLKCH 742

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----NRIYY 837
            +P  F  A +  +        +  +DAR+  + + P  VN    D  +         +  
Sbjct: 743  HPDVFACALLNAQPMGFYAPAQIVRDARRHGVPVRPIDVNASRWDCTLEPAQGRLMALRL 802

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  ++G+G      I        F S+ED   R     +  + LE L  A A    G  
Sbjct: 803  GLRLVRGLGNAEGARIATVREADLFRSVEDLWRRA---AVPLKALEHLAAADAFRSLGLG 859

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-----FSDKITLEKFSVENSSVRF 952
            R + L ++  +                 +FA                    +        
Sbjct: 860  RREALWAIKGL-----------APLPLPLFAAADAREAAIRPELDEPAVALAPMPEGAAV 908

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              + R  G     HP+   +P L + GI           G  + +A +V+ +Q+  + KG
Sbjct: 909  VADYRASGLSLGRHPVAFLRPDLARDGISACAALKRLRDGARVTVAGLVLVRQKPGSAKG 968

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
              + ++T  +  +      +P
Sbjct: 969  --VLFITIEDETEVANLVVWP 987


>gi|53803568|ref|YP_114587.1| DNA polymerase III subunit alpha [Methylococcus capsulatus str. Bath]
 gi|71151827|sp|Q605W1|DNAE2_METCA RecName: Full=Error-prone DNA polymerase
 gi|53757329|gb|AAU91620.1| putative DNA polymerase III, alpha subunit [Methylococcus capsulatus
            str. Bath]
          Length = 1047

 Score =  579 bits (1491), Expect = e-162,   Method: Composition-based stats.
 Identities = 270/1051 (25%), Positives = 450/1051 (42%), Gaps = 94/1051 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S++S L GA     ++ + A     A+A+TD  +L   +    +A   G + I
Sbjct: 9    FAELHALSNFSFLRGASHPKELVAEAARLGYAALALTDECSLAGVVRAHAEAKTLGFKLI 68

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  ++                  P +VLL     GY +L   ++        K   R
Sbjct: 69   IGSEFRLEDG----------------PKLVLLAMDRRGYGQLAAFITLGR-RAAEKGEYR 111

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    L+    +  I +      P             ++      +LF  R ++ ++   
Sbjct: 112  LLRGQLETHPLDQCIAIWLPEDAP------------DDETGAWLARLFPARCWIGVELFL 159

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             G D  R S +  L     LPLVA N+    + E     D L A+     +++       
Sbjct: 160  SGGDGLRLSVLQALGERLGLPLVACNDVHMHARERQPLQDTLTAIRLGRPLAELGYALFP 219

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                     E ++        LE ++ IA RC F L       P  +  +          
Sbjct: 220  NGERHLRPIEFLARI-YPRALLEESLRIAERCRFSLDELRYEYPAELVPDG----YTAIA 274

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR     G+  R  +GA          R++++ EL +I  M +  +FL V D +++A+ 
Sbjct: 275  WLRELTRQGMAERWPEGA------PDKVRRQVEHELELIGAMAYEPFFLTVHDVVRFARS 328

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A S   Y L IT++DP R  LLFERF++ +R   PD D+DF  +RR+E
Sbjct: 329  RGIL-CQGRGSAANSAVCYCLGITEVDPARLDLLFERFISRERNEPPDIDVDFEHERREE 387

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+  KYG  R A   +  + + ++A+RDV RAL    S++D L +++          
Sbjct: 388  VIQYIYRKYGRHRAALAASLITYRVRSAVRDVARALGFSPSRIDTLARVLDRHGVAETLP 447

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            + +A+          +P+V RLL + Q L G  RH S H  G VI    LS  VP+    
Sbjct: 448  ERLAE----AGLASENPAVRRLLALMQMLVGFPRHLSQHVGGFVIAAEDLSHWVPVENAA 503

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
              +  V Q++   +E  GL+K D L L  LT ++K+L ++ + RG    L+ +P +D   
Sbjct: 504  MPERTVIQWDKDDLESLGLLKVDVLSLGMLTAIRKALAYVGEGRGRPFTLADVPPEDPAV 563

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG- 667
            Y +L    ++G+FQ+ES      L  ++P    D++  +++ RPGPI   +V+       
Sbjct: 564  YEMLQRADSIGVFQVESRAQMSMLPRLRPQSYYDLVIQIAIVRPGPIQGDMVHPYLTRRA 623

Query: 668  -KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEEM 725
              E +    P ++ +LK T GV I+QEQVMQ+A + +G++  EAD LRRAM     K  +
Sbjct: 624  GLEPVSYPSPAVEKVLKRTLGVPIFQEQVMQLAMVAAGFTPGEADRLRRAMAAWHRKGGL 683

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +  +++ + G  + G  +  A  I+  +  F +YGF +SH+A++A+++Y +AW+K H+P 
Sbjct: 684  EPFEKKLMDGMRERGYEERFARQIYRQIRGFGEYGFPESHSASFALLAYVSAWLKCHHPA 743

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI---------- 835
             F  A +  +        +  QDAR+  +++ P  VN    D  +    I          
Sbjct: 744  AFACALLNSQPMGFYGPSQLIQDARRHGVEVRPIDVNHSDWDCTLEPTEIPNPLSLWERV 803

Query: 836  -------------YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                            L  + G  +  A+ + +A    PF S++D  +RV    L+RR L
Sbjct: 804  GVRALQTGSNPALRLGLRLVNGFSSAAAQRLSDARRQGPFQSIQDLATRVP---LDRREL 860

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E+L  A AL   G  R +       ++       +         FA  +           
Sbjct: 861  EALAAADALHGLGGHRHRAFWEAAGVEAPTPLYAE-------PQFAEAE---------PL 904

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                  +     +    G     HPL + +  L + G +  E       G   R+A +VV
Sbjct: 905  LRKPGEAEDVIADYAAAGASLRRHPLSLLRERLDRRGFRTAEALWQVRNGAIARVAGLVV 964

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +Q+  T  G+   +VT  +   +     +P
Sbjct: 965  CRQRPMTANGT--TFVTIEDETGQINLIVWP 993


>gi|226228139|ref|YP_002762245.1| error-prone DNA polymerase [Gemmatimonas aurantiaca T-27]
 gi|226091330|dbj|BAH39775.1| error-prone DNA polymerase [Gemmatimonas aurantiaca T-27]
          Length = 1113

 Score =  579 bits (1491), Expect = e-162,   Method: Composition-based stats.
 Identities = 278/1070 (25%), Positives = 457/1070 (42%), Gaps = 86/1070 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS++SLL+GA     ++ + A+    A+A+TD + +   ++F   A    +  I
Sbjct: 29   YAELHCHSAFSLLDGASLPEQLVTRAASFGYQALALTDHDEMGGIVQFGVAARERQLNAI 88

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L +      +M +           +VLL  T EGY+ +  LV+R  +  + +    
Sbjct: 89   LGVELTV------RMPHLDGQRGDRRTQLVLLAETREGYRNISTLVTRARMDSE-RGRPS 141

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L+ L++    G+  LTGG  G + +         A +       +FG  L +    HR
Sbjct: 142  VPLAMLRQ-HAAGVTALTGGPRGWVPQLLAEGRQYEAFEAAQELHAIFGQHLAIECWDHR 200

Query: 191  GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV-VSQKDRPRV 248
              +      Q++ LA    +P V TNN  +   +D   HD L A+ H         R R 
Sbjct: 201  LPEERVLVEQLIPLAKWLGVPWVVTNNVYYAEPKDRAVHDALSALRHQRTLDEMGTRLRP 260

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              +  LK+   +   +  L E +  T++IA+RC+F L    P +P F   +        +
Sbjct: 261  NAEWALKDPRLIYQRWRGLEEGVRATLDIAKRCAFRLAGLKPAMPPFPLPDGF----TAD 316

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L    + G   R           +  +RQ++  EL  I R   + +FL V   ++ A+
Sbjct: 317  TYLEEIVLTGARERWGDRF------SDVHRQQIAHELAAIRRRDCATFFLTVWRIVRHAR 370

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I    GRGS A S   Y L +T +DP+ F LLFERFL  D    PD DIDF    R+
Sbjct: 371  SEGIL-CQGRGSAASSAVCYCLGVTPVDPIYFGLLFERFLGDDATEEPDIDIDFAHRDRE 429

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             ++++V   +G E  A +    +   ++A RD  R L     Q D L        AH  +
Sbjct: 430  RILQHVYKHFGREHAAMVCEQITWGGRSAARDAARVLGFSPQQGDILADFSDRHGAHTTA 489

Query: 489  LQAIADDSRFR----EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                  + + R       L DP V +L  +   L  L RH S H  G V+ D PL  LVP
Sbjct: 490  DLFETAEGQQRLTAAGFDLTDPRVQQLAPVMNGLHELPRHRSIHVGGFVLSDEPLGSLVP 549

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +     +D  V Q+    +   G+ K D LGL  LT++Q  L +L   +   +D++    
Sbjct: 550  IEPASMADRTVIQWEKDDLGPVGMYKIDLLGLGMLTVVQDCLRYLRHTKNTHIDMAHFNM 609

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662
            DD + Y  +    T+G+FQ+ES      L  ++P C  D++  V+L RPGP+   +V+  
Sbjct: 610  DDKDVYDTMCRADTVGVFQIESRAQMSTLPRLKPRCFYDLVVEVALIRPGPLQGQMVHPY 669

Query: 663  -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KK 720
              R+  +E +   HP + P+L+ T GV I+QEQ MQ+A  ++ ++ ++AD LR+ MG K+
Sbjct: 670  LRRRAKEEAVDYPHPDVKPILERTFGVPIFQEQAMQVAIKMADFTQAQADELRKTMGHKR 729

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             K  M K + +   G  K  I   +   I   +  FA +GF +SHAA++A+I Y TA+++
Sbjct: 730  SKVRMKKVERQLRDGMEKKKIDPKVIERICHQINGFAAFGFPESHAASFALIVYATAYLR 789

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--------- 831
             HY  E+L A +  +           +DA++  +++ P  +     D  +          
Sbjct: 790  YHYAPEYLCAILNAQPMGFYAPGTLIEDAKRHGVEVRPVDLMRSGWDHSLELPDGRTLMP 849

Query: 832  -DNRI--------------------YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
             D  I                       +  I+ +G+   + +  A AD PF S+ED  S
Sbjct: 850  NDGTILWGPRHTIDATQTSAEHVAVRLGVRLIRNLGSKARKVLEAALADGPFRSIEDAVS 909

Query: 871  RVDSKKLNRRVLESLVFAGALDCF------GYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            RV    L+ R   +L  AGALD           R   L  +  + K              
Sbjct: 910  RV---TLDARGWRALAEAGALDSMFAHEPPERRRRVALWEVLALTKEPPLPL-------- 958

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                               +          + R+ G    GHP+   +P+L   G++  +
Sbjct: 959  -------APPRRAPPPTSLAACTPVELTAADYRMTGVSLVGHPMKHARPVLEPNGVRTIQ 1011

Query: 985  ESVAT-IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +       G  + +A +V+ +Q+  T KG    ++T  +          P
Sbjct: 1012 DIQQHGKDGETVAIAGVVICRQRPPTAKG--FVFLTLEDETGMLNIIITP 1059


>gi|225182038|ref|ZP_03735469.1| DNA polymerase III, alpha subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225167251|gb|EEG76071.1| DNA polymerase III, alpha subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 1022

 Score =  579 bits (1491), Expect = e-162,   Method: Composition-based stats.
 Identities = 339/1032 (32%), Positives = 539/1032 (52%), Gaps = 57/1032 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL+V S YS L GA  L +++ +      PAIA+ D   L  A+ F+  A   GI+P
Sbjct: 2    TFVHLRVKSEYSFLRGACRLEDLVARARELGMPAIALVDYGVLHGAVRFTNLARQYGIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +  +                P    +VLLV    G+Q L+ LV+R+ L        
Sbjct: 62   ILGAEFSL----------------PCGLPLVLLVRDRTGWQNLVRLVNRVQLA-----RP 100

Query: 130  R---ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            R   + + W+ E    GL  +     G   R     S Q   + L   + +FG  +Y+ L
Sbjct: 101  RSDTLDMGWIAEDAA-GLTAVLPAGGGETVR-----SRQSYIQALEQLQPVFGCEVYLGL 154

Query: 187  QRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            +        R++++V ++A    +PLVAT+N  ++   D E + ++  +     ++   R
Sbjct: 155  EDGGLPGTKRQNELVAKVAEGKNVPLVATHNVHYVLPGDDEVYRMVNCIRTGRPLAGAGR 214

Query: 246  -PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                   +YL   +EM   F+    A ENT+++A+RC+FIL+     LP F++    D +
Sbjct: 215  SFLPGAAYYLPAPAEMHRRFAAFSGACENTLDLAKRCTFILEQEGMQLPAFLQ---QDCK 271

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +  E  LR   + G++ R  + A A          RL+ EL VI     S YFLIV D +
Sbjct: 272  EPAEAVLRRLCLEGMQRRGLENAEAYR--------RLERELAVIIPKGLSAYFLIVHDLV 323

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+K NI VGPGRGS  GS+ AY L I  +DPL   L FERFL+ DR   PD D+D CQ
Sbjct: 324  SYARKQNISVGPGRGSAGGSLVAYLLGIIQVDPLAHGLYFERFLSEDRSGFPDIDLDVCQ 383

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR+E++ Y++++YG   VAQ+  F +L A+AA+R+VG+ L M   ++  + + +P    
Sbjct: 384  RRREELLGYLRDRYGQGYVAQVSAFSTLGARAAVREVGKVLDMTGEKISTVAEALPYYAG 443

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                  A+     F  A+L D     +L  +++LEGL RH STHA+G++IGD  L + +P
Sbjct: 444  RGGIEAAVGQYPEFMSAKLRDEDSGTVLAGARRLEGLCRHLSTHASGVIIGDGNLQEALP 503

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL-SLIPF 603
            + R    ++    ++   +E+ G +K D LG + LT+   +L ++ +R     +   IP 
Sbjct: 504  LCRGPAGEVLTQ-WDKDDVEEMGFLKIDVLGSRNLTIAHDALSWVRKRHGTTLVAEEIPL 562

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
            DD +TY +L    +LG FQLES GMR+ L  + P  +ED+I L+SLYRPGP ++ +V  +
Sbjct: 563  DDEDTYAMLRRGESLGCFQLESVGMRRVLRRLAPQRLEDLIHLLSLYRPGPWESGLVESF 622

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R++G+E +  +HPL+  +L ET GV++YQEQVMQ+A  L GY+  EAD LRR M +++
Sbjct: 623  IARRHGREDMSGVHPLLTGILAETYGVVLYQEQVMQVACELGGYTPGEADGLRREMSRRL 682

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
                +  + +F++GA K G+S+  A ++F  L +FA Y FNK+H+AAYA++SY TA++K 
Sbjct: 683  PSLQEFHQPKFVAGAVKRGLSRAEAEDVFTHLCRFAGYSFNKAHSAAYALVSYWTAYLKK 742

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYPVEF AA ++           + ++A    + ++PP VN   + F      I  +L  
Sbjct: 743  HYPVEFYAALLSS-GSGYYATAVYVREAAIRGVPVLPPHVNHSGLSFVPEKEAIRSALPV 801

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            ++ +G   A  ++EA    PF SL DFC RV    L R  L +L+ AGA    G +R Q 
Sbjct: 802  VRDLGARAAEALLEAQKKGPFMSLHDFCCRVGRSALRRSALVNLIKAGAFAGLGRNRRQA 861

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L SLD++ K+      +R     ++         ++  +      +       E   LG 
Sbjct: 862  LASLDHVLKWT-----DRQPGQLSLLDLMP----EESAVPALPDFSWPEVVAAELETLGM 912

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
              S HPL  YK  L+ +  +          G  + +A  V+ + +++ ++G  +  +  S
Sbjct: 913  ALSDHPLACYKKQLQSVSREPLCNLCNLPVGTKVTVAGTVMGRTRRRLKQGGVMLTLFIS 972

Query: 1022 EPAKEYEANFFP 1033
            + +   EA F+P
Sbjct: 973  DESGFAEAVFYP 984


>gi|310821701|ref|YP_003954059.1| DNA polymerase III subunit alpha [Stigmatella aurantiaca DW4/3-1]
 gi|309394773|gb|ADO72232.1| DNA polymerase III, alpha subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 1007

 Score =  579 bits (1491), Expect = e-162,   Method: Composition-based stats.
 Identities = 277/1030 (26%), Positives = 458/1030 (44%), Gaps = 75/1030 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S L GA     ++   A    PA+A+TD + L+  ++    A   G++ I
Sbjct: 2    YAELVCRSNFSFLRGASHPEELVATAARLGLPALALTDGDGLYGVVKAHLAAREHGLKLI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L +                   P +V+    A GY  +  LVS   +    K    
Sbjct: 62   LGTELTLT----------------EGPPVVVYAMDAGGYANMCRLVSASRMA-HPKGETG 104

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    + E  +EGLI L    +                +++    + F  R +V L R  
Sbjct: 105  LPWREVAER-SEGLIALLPHPAPI--------------EQVGGLAEAFPGRFHVGLCRTL 149

Query: 191  GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRV 248
               D  RE++   LA    +PL A N+            DVL A+ H T V +   R   
Sbjct: 150  SAGDGPREARAEALARELGVPLCAHNDVHVHHRRRQPLQDVLTAIRHKTTVDKAGTRLLP 209

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              +  LK+ +EM  +F D PEA+E T+EIA+RC   L                       
Sbjct: 210  NAERTLKSPAEMARLFRDRPEAIERTLEIAQRCHATLDDLRYHFSEEDLPPG----LTAM 265

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR     GL VR   G         + R++++ E+ +I  + F GYFL + D +++A+
Sbjct: 266  GHLRQLTEEGLGVRYPAGV------PPEVRKQVEHEMRLIEALDFPGYFLALWDIVRFAR 319

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I    GRGS A SV  YAL +T IDP+R  LLFERFL+ +R   PD D+DF  +RR+
Sbjct: 320  SRGIL-CQGRGSAANSVVCYALQLTAIDPVRMGLLFERFLSMERKEPPDIDVDFEHERRE 378

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EV++YV  K+G  R   +  F   + + ALR+VG++L +   QVDRL K+        V+
Sbjct: 379  EVLQYVYEKHGRHRAGMVCEFICYRGRLALREVGKSLGLSLDQVDRLSKVAAA-SGFEVT 437

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             + + +          D  V + L +++++EG  RH S H  G VI   PL  L+P+   
Sbjct: 438  PEVLVE----AGLSAFDSRVRQTLTLAREMEGFPRHVSIHVGGFVITREPLVDLIPVENA 493

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHE 607
                  V Q+        G++K D L L  LT + K L  + +   +   L+ IP +D +
Sbjct: 494  AMKGRTVIQWEKDDTNALGVLKVDLLALGMLTAVSKCLALIREHFGRELSLATIPPEDPK 553

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
             Y +L    T+G+FQ+ES      L  ++P    D++  ++L RPGPI   +V+   +  
Sbjct: 554  VYDMLCEADTVGVFQIESRAQMNMLPRLKPRTFYDLVIEIALIRPGPIVGNMVHPYLRRR 613

Query: 668  KEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEE 724
              +       P +  +L++T GV ++QEQ M++A + +G++  EAD LRRA+G K+ ++ 
Sbjct: 614  NGEEVPTYPTPDVQAILEKTLGVPLFQEQAMKLAMVAAGFTAGEADGLRRALGHKRAEQL 673

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            ++  + RF+ G  K G        +F     FA YGF +SH+A++A+I+Y ++W+K HYP
Sbjct: 674  LEPYRMRFVEGGRKRGYPAAYMEELFAQFRGFAHYGFPESHSASFALIAYASSWLKCHYP 733

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIK 843
              F  A +  +            DAR+  +++ P  V     D  + +   +   L  ++
Sbjct: 734  QAFTTALLNSQPMGFYAPHTLVADARRHGVEVRPVDVRHSGWDCTLEEGGALRLGLRMVR 793

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            G+G    + +  A A   F  L D   R    ++ R  L  L  AGAL     SR Q L 
Sbjct: 794  GLGEAAGKRVAAARAGG-FSCLGDVARRT---RIPRHELTRLALAGALASLCGSRRQALW 849

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             +  +               +++F       +      +      + R   +   +G   
Sbjct: 850  EIQAL----------GPLDADDLFFGMSMDGTQ----VELPPMGVAERVTADYETVGLSL 895

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
              HPL++ +P LR +G    E       G  + +  M++ +Q+  T +G  + +++  + 
Sbjct: 896  EKHPLELLRPTLRTLGAVSAEGLQRVSSGRRVAVGGMLICRQRPPTARG--MCFLSLEDE 953

Query: 1024 AKEYEANFFP 1033
                     P
Sbjct: 954  TGIANLVVPP 963


>gi|86360883|ref|YP_472770.1| DNA polymerase III alpha subunit protein [Rhizobium etli CFN 42]
 gi|86284985|gb|ABC94043.1| DNA polymerase III alpha subunit protein [Rhizobium etli CFN 42]
          Length = 1087

 Score =  579 bits (1491), Expect = e-162,   Method: Composition-based stats.
 Identities = 274/1042 (26%), Positives = 458/1042 (43%), Gaps = 78/1042 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  LQV + +S L GA S   +          A+ I D N+L   +   + + A G++ 
Sbjct: 2    RYAELQVTTHFSFLRGASSAEELFATAKLMGIAALGIADRNSLAGIVRALEASRATGLRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC+LD+                    SI++  +    Y RL  L++        K + 
Sbjct: 62   VVGCRLDL----------------QGGMSIIVYPTDRTAYSRLTRLLTLGKGRGG-KANC 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
             + L  +    +EGLI +          A           +L    ++FGDR YV+L  R
Sbjct: 105  ILHLKDVAHY-SEGLIGILVPDMPDDGCAV----------QLRKMAEIFGDRAYVSLCLR 153

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPR 247
             R  D+ R  ++  LA  H +  V TN+ LF      +  DV+  +   T +        
Sbjct: 154  RRPNDQLRLHKLSNLAAQHRVKTVVTNDVLFHEPGRRQLQDVVTCIRTGTTIDDVGFERE 213

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               D YLK   EM  +F   PEAL  T EI  RC F L+      P          Q+  
Sbjct: 214  RHADRYLKPPEEMARLFPRYPEALSRTAEIVERCRFSLEELVYQYPEEALIPGMTAQQSL 273

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+        G++ R  +G  A         + +  EL++I  MK++ YFL V   +++A
Sbjct: 274  EHY----TWEGVKTRYPEGLPAH------VEKTIRHELSLIETMKYAPYFLTVFSIVRYA 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I    GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +RR
Sbjct: 324  RSQGIL-CQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEHERR 382

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+++   YGH++ A   T    +AK A+RDVG+AL +P   +  L   I +      
Sbjct: 383  EEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALGLPEDLIKALSSGIWSW----- 437

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            S     +  R       D  +   L ++Q+L G  RH   H  G V+    L  LVP+  
Sbjct: 438  SETVGENQVRALGLNPEDRRLALTLRLAQQLMGAPRHLGQHPGGFVLTHDRLDHLVPIEP 497

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606
               +D  V +++   +E   ++K D L L  LT + K+   + +   +  +L+ IP +D 
Sbjct: 498  AAMADRQVIEWDKDDVEALKMMKVDVLALGMLTCMAKAFALIGEHKHQDLELATIPQEDP 557

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    TLG FQ+ES      L  M+P    D++  V++ RPGPI   +V+    R
Sbjct: 558  ATYAMIRRADTLGTFQIESRAQMSMLPRMKPKTFYDLVIQVAIVRPGPIQGDMVHPYLRR 617

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE- 723
            + GKEK+    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M       
Sbjct: 618  REGKEKVEYPTPELEAVLHKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATFKFTG 677

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             + + +++ +SG  +NG +   A   F  L  F  YGF +SHAA++A+I+Y + ++K H+
Sbjct: 678  GVSRFQDKLVSGMIRNGYTMEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYIKCHF 737

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------NRIYY 837
            P  F AA +  +        +   DAR+  +++ P  +N    D  + +      + +  
Sbjct: 738  PDVFCAALLNSQPMGFYAPAQIVIDARKHGVEVRPVCINRSRWDSTLEEVEGTERHSVRL 797

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGY 896
             +  ++G+ T  A  I+ A AD+PF S++D   R     +    L  L  A A       
Sbjct: 798  GMRLVRGLATADAARIVAARADEPFASVDDMWRR---SGVPVASLVELAEADAFLPSLRL 854

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----AHEKGTFSDKITLEKFSVENSSVR 951
             R   L ++  ++                +F        +     +    +         
Sbjct: 855  ERRDALWAIRALRDE-----------PLPLFTAAAEREARAIAEQQEPDVELRQMTDGHN 903

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +   +G     HPL   +  L +  I    E++A   G  + +A +V+ +Q+  + K
Sbjct: 904  VVEDYSHVGLTLREHPLRFLRADLTQRRIVTCAEAMAARDGKWLMVAGLVLVRQRPGSAK 963

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G  + ++T  +         +P
Sbjct: 964  G--VMFITIEDETGIANVVVWP 983


>gi|16119329|ref|NP_396035.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58]
 gi|71151851|sp|Q8UKK2|DNE22_AGRT5 RecName: Full=Error-prone DNA polymerase 2
 gi|15161845|gb|AAK90476.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58]
          Length = 1085

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 270/1042 (25%), Positives = 444/1042 (42%), Gaps = 78/1042 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  LQV + +S L GA S   + +   A    AI + D N+L   +   + + A  I+ 
Sbjct: 2    SYAELQVTTHFSFLRGASSAQELFETAKALGIQAIGVVDRNSLAGIVRALEASRATDIRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC+LD+                    S+++  +    Y RL  L++        K + 
Sbjct: 62   VVGCRLDLTDGM----------------SLLVYPTDRAAYSRLTRLITLGKSRGG-KNNC 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
             +    +                G I              +L    + FGDR YV+L  R
Sbjct: 105  ILHWDDVIAYSR-----------GMIGVLVPDLPDATCAAQLRRIAEAFGDRAYVSLCLR 153

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPR 247
             R  D+ R  ++  LA   ++  V TN+ LF      +  D++  + H+T +        
Sbjct: 154  RRQNDQMRLHEISNLAARFKVKTVVTNDVLFHEPGRRQLQDIVTCIRHNTTIDDVGFERE 213

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               D YLK   EM  +FS   EAL  T+EI RRC F L+      P        D Q   
Sbjct: 214  RHADRYLKPPEEMERLFSRYSEALARTLEIVRRCKFSLEELTYQYPEEAIVPGKDAQASL 273

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+            R  +G        QD  + +  EL++I  MK++ YFL V   +++A
Sbjct: 274  EHY----VWECAPDRYPEGL------PQDVLKTVRHELDLIRTMKYAPYFLTVFSIVRFA 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I    GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +RR
Sbjct: 324  RSQGIL-CQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERR 382

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+++   Y  ++ A   T    +AK A+RDVG+AL +P   +  L   + +      
Sbjct: 383  EEVIQWIYKTYTKDKAALCATVTRYRAKGAIRDVGKALGLPEDVIKALSSGMWSW----- 437

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            S +    + R       D  +   L+++Q+L G  RH   H  G V+    L  LVP+  
Sbjct: 438  SEEVPDRNIRELNLNPDDRRLALTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEP 497

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606
                D  + +++   +E    +K D L L  LT + K+ D + +   +  DLS I  +D 
Sbjct: 498  ATMKDRQIIEWDKDDVEALKFMKVDVLALGMLTCMAKAFDLIREHKGQQLDLSNIEQEDA 557

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 558  ATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPYLRR 617

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE- 723
            + GKE +    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M       
Sbjct: 618  REGKEPVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFTG 677

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             + + K++ +SG  KNG S   A   F  L  F  YGF +SHAA++A+I+Y + ++K HY
Sbjct: 678  GVSRFKDKLVSGMVKNGYSPEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYIKCHY 737

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRIYY 837
            P  F AA +  +        +   DA +  +++ P  VN    D  +        + +  
Sbjct: 738  PDVFCAALLNSQPMGFYAPAQIVGDAIKHGVEVRPVCVNRSRWDCTLERIEGSDRHAVRL 797

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGY 896
                +KG+    A  I+ A  + PF S++D   R     +    L  L  A A       
Sbjct: 798  GFRQVKGLAVADAARIVAARMNNPFASVDDMWRR---SSVPTEALVQLAEADAFLPSLKL 854

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV-----ENSSVR 951
             R   L ++  ++                +FA      +  I  ++              
Sbjct: 855  ERRDALWAIKALRDE-----------PLPLFAAAAEREATAIAEQQEPEVALRQMTDGHN 903

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +    G     HP+   +  L    I    E++    G  +  A +V+ +Q+  + K
Sbjct: 904  VIEDYSHTGLTLRQHPVAFLRRDLSARNIIPCAEAMNARDGRWVYTAGLVLVRQKPGSAK 963

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G  + ++T  +         +P
Sbjct: 964  G--VMFITIEDETGPANIVVWP 983


>gi|307321595|ref|ZP_07600988.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83]
 gi|306892764|gb|EFN23557.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83]
          Length = 1087

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 273/1043 (26%), Positives = 456/1043 (43%), Gaps = 80/1043 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L V + +S L GA S   +          A+ + D N+L   +   + + A G++ 
Sbjct: 2    RYAELHVTTDFSFLRGASSAEELFATAKLMGIEALGVVDRNSLAGIVRALEASRATGLRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC+LD+                    SI++  +    Y RL  L++        K + 
Sbjct: 62   VVGCRLDLQDGM----------------SILVYPTDRAAYSRLTRLLTLGKGRGG-KANC 104

Query: 130  RICLSWLQEIGTEGLI-MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
             I    +     EGLI +L    +  +              +L    ++FGDR YV+L  
Sbjct: 105  IIHFDDVALY-AEGLIGILVPNLADEV-----------CAVQLRKIAEVFGDRAYVSLCL 152

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRP 246
            R R  D+ R  ++  LA  H L  + TN+ LF      +  DV+  +   T +       
Sbjct: 153  RRRPNDQLRLHELTNLAVKHRLKTIVTNDVLFHEHGRRQLQDVVTCIRTGTTIDDVGFER 212

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                D YLK   EM  +F   PEAL  T+EI  RC F L+      P             
Sbjct: 213  ERHADRYLKPPEEMARLFPAYPEALARTMEIVERCRFSLEELVYQYPEEALIPGM----T 268

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L++    G+  R  +G  A         + +  EL +I  MK++ YFL V   +++
Sbjct: 269  AQQSLQHYTWEGVRARYPEGLPAH------VEKTIRHELALIETMKYAPYFLTVFSIVRY 322

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I    GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +R
Sbjct: 323  ARSQGIL-CQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEHER 381

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+++   YGH++ A   T    +AK A+RDVG+AL +P   +  L   I +     
Sbjct: 382  REEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALGLPEDLIKTLSSGIWSW---- 437

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             S        R       D  +   L+++Q+L G  RH   H  G V+    L  LVP+ 
Sbjct: 438  -SETVGERQVRELGLNPDDRRLTLTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIE 496

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDD 605
                +D  V +++   IE    +K D L L  LT + K+   +++     +DL+ IP +D
Sbjct: 497  PATMADRQVIEWDKDDIEALKFMKVDVLALGMLTCMAKAFALISEHKHEDIDLATIPQED 556

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
              TY ++    TLG FQ+ES      L  M+P    D++  V++ RPGPI   +V+    
Sbjct: 557  PSTYAMIRKADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQVAIVRPGPIQGDMVHPYLR 616

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R+ GKEK+    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M      
Sbjct: 617  RREGKEKVEYPTPELEAVLHKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATFKFT 676

Query: 724  -EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              + + K++ ++G  ++G ++  A   F  L  F  YGF +SHAA++A+I+Y + ++K H
Sbjct: 677  GGVSRFKDKLVNGMIRDGYTQEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYIKCH 736

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRIY 836
            +P  F AA +  +        +  +DAR+  +++ P  +N    D  +        + + 
Sbjct: 737  FPDVFCAALLNSQPMGFYAPAQIVRDAREHGVEVRPICINRSRWDCMLEPIDGSGGHAVR 796

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFG 895
              +  ++G+ T  A  I+ A AD+PF S++D   R     +    L  L  A A     G
Sbjct: 797  LGMRLVRGLATADAARIVAARADEPFTSVDDMWRR---SGVPVASLVELAEADAFLPSLG 853

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV-----ENSSV 950
              R   L ++  ++                +F       +  I  ++             
Sbjct: 854  LERRDALWAIKALRDE-----------PLPLFTAAADREARAIAEQQEPEVKLRQMTDGH 902

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                +    G     HPL   +  L K  I     ++    G  + +A +V+ +Q+  + 
Sbjct: 903  NVVEDYSHTGLTLREHPLRFMRDDLAKRRIVTCARAMTAHDGQWLIVAGLVLVRQRPGSV 962

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
            KG  + ++T  +         +P
Sbjct: 963  KG--VMFITIEDETGIANIVVWP 983


>gi|145640823|ref|ZP_01796405.1| DNA polymerase III subunit alpha [Haemophilus influenzae R3021]
 gi|145274337|gb|EDK14201.1| DNA polymerase III subunit alpha [Haemophilus influenzae 22.4-21]
          Length = 868

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 354/880 (40%), Positives = 520/880 (59%), Gaps = 36/880 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1   MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +G++PIIG  + +          +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61  SGMKPIIGADVKV----------KSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQR-G 109

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 I   WL E   +G+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 110 YNDLPYIDQDWLIE-HRDGVIILSGGTQGDVGKKLLKENVAEIESAVDFYQEFFADHFYL 168

Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            L R     +       ++LA   +LPLVATN+ +FL+ ED+EAH++ +A+     +   
Sbjct: 169 ALSRTGRPNEERYIQAALKLAERCDLPLVATNDVMFLNAEDFEAHEIRVAIHDGYTLDDP 228

Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            RP+  T   Y ++  +M  +F+D+P ALENT+ IA+RCS  L++       +   +   
Sbjct: 229 KRPKCYTSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283

Query: 303 IQKEEENELRNKAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                E+ L  K+  GLE RLA        +      Y +RL  EL+VI +M F GYFLI
Sbjct: 284 GDLSTEDFLVQKSKEGLEERLAFLFSDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLI 343

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           +DFC D RD VI +V   YG   V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404 VDFCMDGRDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
           P DP   +  +A   + + + A  +D  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464 PPDPGMTL-AKAFEAEPQLQTAYDSDEEVRALIDMARKLEGVTRNAGKHAGGVVISPTLI 522

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----V 594
           +   P+Y D     PVT F+   +E AGL+KFDFLGL+TLT+++ +LD +  R       
Sbjct: 523 TDFAPLYCDNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINVRMVREGKP 582

Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
           +VD++ IP DD E++ LL    T  +FQLES GM+  ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583 RVDIAAIPLDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGP 642

Query: 655 IDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
           + + +V       +   +         H  + P+L+ T G+I+YQEQVMQIAQ+L+GY+L
Sbjct: 643 LQSGMVDNFIDRKHGKEEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTL 702

Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +++ IF+L+ KFA YGFNKSH+A
Sbjct: 703 GGADLLRRAMGKKKPEEMAKQRSVFKEGAEKNGVDGELSMKIFDLVEKFAGYGFNKSHSA 762

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
           AYA++SYQT W+KTH+P EF+AA MT E+DN +KI     +  +  +++ PP +N     
Sbjct: 763 AYALVSYQTLWLKTHFPAEFMAAVMTSEIDNTDKIVGLYDECLRMGLKVTPPDINIGKHH 822

Query: 828 FKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
           F V     I Y + AIKGVG      ++ A  +  F  + 
Sbjct: 823 FSVSEQGEIVYGIGAIKGVGEGPIEALVTARNEGGFSKIY 862


>gi|322433250|ref|YP_004210471.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX9]
 gi|321165642|gb|ADW71344.1| DNA polymerase III, alpha subunit [Acidobacterium sp. MP5ACTX9]
          Length = 1069

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 280/1044 (26%), Positives = 482/1044 (46%), Gaps = 46/1044 (4%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   +V L   S++S LEGA     + ++ A+   PA+ I D + L+ A      A  
Sbjct: 1    MTE--GYVELHGRSAFSFLEGASMPEAMAEQAASLGMPALGILDRDGLYGAPRLYMTAKK 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTN--QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
             G++  IG ++      N  +    Q  T       + LL  +  GY+ L +L++   L 
Sbjct: 59   LGLRSHIGAEISTAEFGNQVLPEDWQPHTIPERPVRLSLLCESQTGYRNLSQLITGYKLQ 118

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181
             + K         ++E   EGL+ LTGG  GP+  A          K L +  + FG + 
Sbjct: 119  QKSKGEGIAPYRMIEER-AEGLVCLTGGDEGPLAAALARGGLDEGRKALQSLVRTFGQEN 177

Query: 182  LYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TV 239
            +YV LQRHR  ++  R    + LA    LPL+ATN     +  + E  D++ A+ H  T+
Sbjct: 178  VYVELQRHRIREQEARNQAAITLARELHLPLLATNGPNMATAFEREVLDLMTAIRHGCTL 237

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                   +   +  +   +EM+++F DLP A+  TVE++ R  F+++      P +   E
Sbjct: 238  DEAGLLLQRNTNRQMIGATEMLTLFRDLPYAVAETVELSSRLQFVMKDMGYQFPLYPIPE 297

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 +  +  L  + + G+  R   G        +   ++++ EL +IA++  +GYFLI
Sbjct: 298  ----DETMDTFLHKRTMEGVANRY--GCKTSVKLRKKAERQVERELALIAKLGLAGYFLI 351

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++ +KN + V  GRGS A S   Y+L IT +DP+   LLFERFL+  R   PD D
Sbjct: 352  VWDIVEFCRKNGMLV-QGRGSAANSAVCYSLGITAVDPVGMDLLFERFLSEVRGEWPDID 410

Query: 420  IDFCQ-DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            +D    D R+  I+YV  +YG    A      + + K+A  + G+AL        RL +L
Sbjct: 411  LDLPSGDDRERAIQYVYQRYGQLGAAMCANVITYRGKSAAGETGKALGFDVETTKRLTQL 470

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            + +      +   + +  +     L  P + + LE+S ++  L RH   H+ G++I    
Sbjct: 471  VGSWEWKGPT-DTMEEQFQNAGFDLHHPRIAKYLELSIRMLDLPRHLGQHSGGMIIAQGQ 529

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597
            L+ +VP+         V Q++ + +   GLIK D LGL  + +L+  ++ + +    KVD
Sbjct: 530  LASVVPIEPASMVGRNVIQWDKEDVSDMGLIKVDLLGLGMMAVLKDCVELIPRYYGKKVD 589

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI-- 655
            ++ IP DD + Y  L    T+G+FQ+ES     +L    PD   D++  V++ RPGPI  
Sbjct: 590  IAQIPHDDPKVYESLRRADTVGLFQVESRAQMASLPRNNPDKFYDLVVQVAIIRPGPIVG 649

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              +  Y  R+ G+++I   HPL++P+L  T GV ++QEQ+++IA  ++ ++  EA+ LRR
Sbjct: 650  KMMNPYMERRQGRQEIRYPHPLLEPVLHRTLGVPLFQEQLLRIAMTIANFTGGEAEELRR 709

Query: 716  AM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            A+  ++  ++M   + +  +G   NG+       I + ++ FA YGF +SHAA++A+I+Y
Sbjct: 710  ALGSRRSADKMKALELKLRAGMDANGVGPAAQEEIVQSISSFALYGFPESHAASFALIAY 769

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             +AW+K HY   F AA +  +           +DA++  ++I P  V        +    
Sbjct: 770  ASAWLKFHYLGAFTAAILNNQPMGFYSAAVLVKDAQRHGLRIKPVDVLRSSWSCTLEKED 829

Query: 835  -----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                 +      ++G+   +A  +  A   +PF S+E+   RV S  L R  L +L   G
Sbjct: 830  NGKLSLRLGFRYVRGMREGSAVELEAAREMRPFASIEELARRVPS--LTRTDLTTLAEVG 887

Query: 890  ALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AL+    G  R + L  ++   + A             +             L       
Sbjct: 888  ALNSIGEGLHRREALWQVERAGRKA-----------GPLLEELDRDEDADSPLRAMEP-- 934

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
               R   +    G     HP+   +P LR M I    +      G   R+A  V+++Q+ 
Sbjct: 935  -HERMVADYASTGVTVGRHPMAHCRPQLRAMEIIPARDLSLLRHGVKARIAGCVIARQRP 993

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANF 1031
             T  G    +++  +      A  
Sbjct: 994  GTAHG--FIFLSIEDETGISNAII 1015


>gi|326333953|ref|ZP_08200183.1| DNA polymerase III, alpha subunit [Nocardioidaceae bacterium Broad-1]
 gi|325948232|gb|EGD40342.1| DNA polymerase III, alpha subunit [Nocardioidaceae bacterium Broad-1]
          Length = 1141

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 283/1074 (26%), Positives = 461/1074 (42%), Gaps = 100/1074 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---- 66
            +  L  HS +S L+GA S + ++ +        IAITD +  + A  F++ A   G    
Sbjct: 53   YAELHAHSDFSFLDGASSPSALVSEAIRKGLRGIAITDHDGFYGAPAFAEAAQKLGPTGE 112

Query: 67   ---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
               +  + G +L + +        Q     P    +++L    EGY++L   ++   L  
Sbjct: 113  SDRLLTVYGAELSLGL-----TKPQNGVADPEGSHLLVLARGVEGYRQLAGAITEAQLRG 167

Query: 124  QGKQSVRICLSWLQEIGTEG-LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DR 181
              K      L  L +    G  ++LTG   G + +A        A + L      FG D 
Sbjct: 168  DEKGRPTYDLDELADRARSGSWLILTGCRKGAVRQALTGTGPIAAARALRELTDRFGRDN 227

Query: 182  LYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            + V L  R    D Y    +  +A    LP VATNN  + + + +   D L AV     +
Sbjct: 228  VVVELTDRGHPTDSYDNDLLAGIAREAGLPTVATNNVHYATPDRHRVADALAAVRARRTL 287

Query: 241  SQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            S+           Y+++  EM  +F   P A+  +VEIA  C+F L+   P LP+    E
Sbjct: 288  SEIAGWLPAGPVAYVRSGEEMEHLFRRYPGAVARSVEIAEECAFDLRKATPKLPKRGIPE 347

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +       + LR+    G   R AQ   A     +  R+R++ EL+VI R  F GYF+I
Sbjct: 348  GE----TAASRLRHLTEEGFAERYAQAYAADPEFVEKARERVEHELDVIERKDFPGYFVI 403

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D + +A+  +I    GRGS A S   YAL IT IDP+ + L FERF++  R   PD D
Sbjct: 404  VHDIVDYARSQDIL-CQGRGSAAASAVCYALGITAIDPVFYELPFERFISEHREEEPDID 462

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  D+R++VI++V ++YG    AQ+      + K A+RD  +AL     Q D   K +
Sbjct: 463  VDFDSDKREKVIQWVYDRYGRRNAAQVANIVGYRPKMAVRDAAKALGHSPGQQDAWSKHV 522

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                                EA         +L ++ ++ G  RH   H+ G+V+ + P+
Sbjct: 523  GYSRV---------------EAPDDVGIPAPVLALAAEIHGAPRHLGIHSGGMVLTEEPI 567

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598
             ++VP+ R       V Q++    E  GL+KFD LGL  L  L   ++   +  G    L
Sbjct: 568  GEVVPIERARMDKRTVIQWDKDAAEYMGLVKFDLLGLGMLAALDHMMNLAREHLGEGWTL 627

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID-- 656
            + IP ++   Y +L    ++G+FQ+ES      L  +QP C  D+   ++L RPGP+   
Sbjct: 628  ATIPKEEPAVYDMLCRADSIGVFQVESRAQIGTLPRLQPRCFYDLAIEIALIRPGPVQGG 687

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  Y  R  G+E +   H L+ P+L+ T+GV ++QEQ+M++ ++L  +S  +AD+LRRA
Sbjct: 688  AVHPYVRRATGREPVSYSHELLIPVLERTRGVPLFQEQLMEMGRVLGDFSHDDADLLRRA 747

Query: 717  M-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M  K+  E +D  KE+   G    G+++  A  ++  +  FA++GF +SHA ++A + Y 
Sbjct: 748  MGSKRGVERIDSLKEKLYRGMRDKGMTEQTAKAVYTQILSFANFGFAESHALSFAKLVYA 807

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF----------------------- 812
            ++W K HYP  FLA  +  +       +   QDAR+                        
Sbjct: 808  SSWFKLHYPAAFLAGLLRAQPMGFYSPQSLTQDARRHGVEVRRPDLIRSQAAADLEPLDD 867

Query: 813  ---------------NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                             + +P + +      + G+  +   L +++G+G   A+ I++A 
Sbjct: 868  DVSPTGKDECRLDGTKTEWVPGTPDPTPEHRRDGNFAVRLGLDSVRGIGKDVAQRIVKAR 927

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
             + PF    D   R     L R  LE+L  AG LD F  SR Q L         A W E 
Sbjct: 928  TEAPFKDSLDLSRRA---GLERAQLEALATAGCLDVFTSSRRQALWQ-------AGWTET 977

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                        +                +       +    G     HP    +  L  
Sbjct: 978  E----------DQLEGVRFTAETPALPGLDPVEETLADLWATGVTPGSHPFAHLRAGLTA 1027

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             G+    +   +  G  I +A +V  +Q+  T  G  + ++   +         
Sbjct: 1028 AGLPSIGDLPTSEPGRRITVAGLVTHRQRPGTAGG--VTFINLEDETGMLNVVC 1079


>gi|88608539|ref|YP_506064.1| DNA polymerase III, alpha subunit [Neorickettsia sennetsu str.
            Miyayama]
 gi|88600708|gb|ABD46176.1| DNA polymerase III, alpha subunit [Neorickettsia sennetsu str.
            Miyayama]
          Length = 1077

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 429/1017 (42%), Positives = 611/1017 (60%), Gaps = 75/1017 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL+V S YSLL        I+D   A   PA+A+TD + +  ALEF++ A A+GIQP
Sbjct: 5    TFVHLRVRSDYSLLRAVTKPRRIVDLARAAGMPAVALTDIDTMAGALEFAEYAKASGIQP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  L I             +       ++L+    EGY  +I+L   + L        
Sbjct: 65   IIGIDLSI-------------SHNRVDSRVLLIAKNEEGYHNMIKLSGIVSLR------- 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+ L+ +    ++GLI+L     G        + S  AE  +   K++FG  L+V +QR 
Sbjct: 105  RVALNEVF-THSKGLILLL----GEFFIDAINSYSIDAETLVSDLKQVFGKDLFVEIQRL 159

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               ++  E +++QL Y H +P VATN+ LF   +  EAHDVL  +   T V+  +R   +
Sbjct: 160  G--NQSAEEKLIQLGYEHNIPFVATNDVLFPDTDFREAHDVLTCIGSLTYVNDINRVHYS 217

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P+ Y K+  EM+++F+DL EAL NTV IARRCSF+ +V +PILP+F  +       +E +
Sbjct: 218  PESYFKSAEEMIALFADLKEALHNTVLIARRCSFMPEVRSPILPKFECEM------DESD 271

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            ELR  +  GL  R+           Q+Y  RL++EL +I  M ++GYFLIVADFI+W+K 
Sbjct: 272  ELRRLSYIGLHRRMGADV------PQNYLDRLEYELGIIIDMNYAGYFLIVADFIRWSKA 325

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I VGPGRGSG GS+ A+ L IT +DPL+F+L FERFLNP R+SMPDFD+DFCQ++R  
Sbjct: 326  NGIVVGPGRGSGVGSIVAWCLGITGLDPLKFALFFERFLNPVRVSMPDFDVDFCQEKRHL 385

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS- 488
            VI YV+ KYG   VAQI+TFG+LQ +AALRDVGR LQ+PY +VDR+CK+IPN+PA+P+S 
Sbjct: 386  VIEYVRKKYG--HVAQIMTFGTLQPRAALRDVGRVLQLPYGRVDRICKMIPNNPANPISL 443

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +AI  D   +     D S+ +LL+++ KLEG  RH STHAAGIVI D P+   +P+Y D
Sbjct: 444  QEAINLDKDLQRESEDDESIAKLLDLALKLEGTLRHTSTHAAGIVISDTPIEDYLPVYHD 503

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
              SD+PVTQ++MK++EKAGLIKFDFLGLKTLT++ ++   +  +    D+  IP DD  T
Sbjct: 504  KESDIPVTQYSMKYVEKAGLIKFDFLGLKTLTVINQACLLVRLKNPNFDIDSIPLDDKRT 563

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            Y LL+    +G+FQL+++ M + L+ + PDC EDIIAL+SL RPGP+ NI  Y  RK+GK
Sbjct: 564  YDLLSAGNAIGVFQLDNAYMCETLKRLHPDCFEDIIALISLNRPGPMANIPTYIARKHGK 623

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E +   HPL++  LKET GV+IYQEQVM++ +LL+GY+L+EAD+LRR MGKKI+ EM +Q
Sbjct: 624  EAVKYPHPLLESSLKETFGVVIYQEQVMEMVRLLAGYTLAEADILRRVMGKKIRAEMSEQ 683

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
             E+F+ GA +NGI    A  IFE++ KFA YGFNKSHAAAYA+ISYQTA++K ++P+EF 
Sbjct: 684  AEKFVEGAKRNGIETERAQEIFEMIEKFAGYGFNKSHAAAYALISYQTAFLKANFPIEFT 743

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             A++ LE+ + +K+    QDA+ + I I+PP +N   + F + DN I YSLAA+K VG  
Sbjct: 744  TAALNLELHHTDKLAILIQDAKNYGITILPPDINKSKILFSIEDNAIRYSLAALKNVGEA 803

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I   S   PF ++ +    +D K ++R+ +ESL+ +GA D     R  L   L  +
Sbjct: 804  AASAIQRRS---PFATIPELQRCLDGKIVHRKAVESLIKSGATDVLSPDRSGLYSCLKEL 860

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                    K        +F          +        N   R + E    GF+   HPL
Sbjct: 861  V------GKEDDGAQMTLFDISVNKPEKTVK-----PWNFFERTQCEFDAFGFFLFDHPL 909

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV---TFSE 1022
              Y+  L+                    +A ++    + ++R   +   +   T ++
Sbjct: 910  FPYRKFLK------------LSPNQ---IAGVITEL-RIRSRGDRKFAVMHVSTVND 950


>gi|162145940|ref|YP_001600398.1| putative DNA polymerase III alpha subunit [Gluconacetobacter
            diazotrophicus PAl 5]
 gi|161784514|emb|CAP54047.1| putative DNA polymerase III alpha subunit [Gluconacetobacter
            diazotrophicus PAl 5]
          Length = 1054

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 274/1038 (26%), Positives = 453/1038 (43%), Gaps = 74/1038 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              +  LQV S +S L GA S   + ++  A    A+ I D N+L   ++    A A G++
Sbjct: 2    SRYAELQVTSYFSFLRGASSPLELFEQARALGIAALGIADRNSLAGMVQAHVAARATGVR 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++GC+LD+                   P +++  +    Y RL  L+S       GK  
Sbjct: 62   LVVGCRLDLAD----------------FPPVLVYPTDRAAYGRLCRLLSLGKSR-AGKAR 104

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
              +    L   G   L +L    +            +     L   K  F DR Y+ L  
Sbjct: 105  CHLLWEDLVAWGDGLLAILVPDVA-----------DEACALHLRKLKDAFHDRAYMALTL 153

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              R  D+ R   +  LA+   +P V TN+ LF + +     DV+  + H+T + +    R
Sbjct: 154  LRRPNDQMRLYALANLAHRARVPTVVTNDVLFHTHDRRILQDVVTCIRHNTTIDEAGFAR 213

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                D YLK   EM  +F   PEA++ T+ I  RC F L   A         E     + 
Sbjct: 214  ERHADRYLKPPQEMARLFGRYPEAVDRTIAIMERCRFSLDDLAY----QYPDEVSVPGQT 269

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L      G      +G         +    L+ EL +I RM ++ YFL V   +++
Sbjct: 270  PQQALEVLTWEGARRFYPEG------IPDEVTASLNHELALIGRMNYAPYFLTVNSIVRY 323

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I    GRGS A S   Y L IT IDP R SLLFERF++ +R   PD D+DF   R
Sbjct: 324  ARSQDIL-CQGRGSAANSAVCYVLGITAIDPARNSLLFERFVSEERGEPPDIDVDFEHAR 382

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R++VI++V   YG ER A        +AK ALRDVG+ + +P   +  L   I     + 
Sbjct: 383  REQVIQWVYGHYGRERAALTAVVIRYRAKGALRDVGKVMGLPEDLIGTLSGQIWGWSKNA 442

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               Q         + R+        L+++  L G+ RH S H  G V+    L +LVP+ 
Sbjct: 443  DPEQFRDTGIDLSDRRIRLT-----LDLACCLIGVPRHLSQHPGGFVLTHDRLDELVPIE 497

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                 D  + +++   I+    +K D L L  LT ++K LD LA+    +  L+ IP +D
Sbjct: 498  PAAMDDRQIIEWDKDDIDVLKFMKVDILALGMLTCMKKGLDLLAEHKGQRFALATIPAED 557

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
              TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    
Sbjct: 558  PLTYAMIRRADTIGVFQIESRAQMSMLPRLKPRVFYDLVIEVAIVRPGPIQGDMVHPYLR 617

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IK 722
            R+ G E      P ++ +LK+T G+ ++QEQ MQ+A + + ++ SEAD LRRAM      
Sbjct: 618  RREGIEPEEYPTPELEKVLKKTLGIPLFQEQAMQVAMVCADFTASEADQLRRAMATFKNT 677

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              + + + + + G   NG ++  A  I++ L  F  YGF +SHAA++A+++Y ++W+K H
Sbjct: 678  GTIGRFQTKLVEGMKANGYTEEFAERIYQQLEGFGSYGFPESHAASFAILAYSSSWLKCH 737

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-------RI 835
            +P  FLAA +  +        +  +DAR+  + I P  VN    D  +           +
Sbjct: 738  HPDVFLAALLNSQPMGFYAPAQLVRDAREHGVGIRPICVNASRWDSTLEGPETACGRFAV 797

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CF 894
               ++ +KG+    A  I+ A   +PF S++D   R     +    L  L  A A     
Sbjct: 798  RLGMSLVKGLANADAARIVAARGARPFASVDDLWRRA---GVPVAALTHLAEADAFRPAL 854

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            G +R + L ++  ++                +FA        +          +      
Sbjct: 855  GLARREALWAIKALRDE-----------PLPLFAAAAVAREAEEPDVLLQPMRAGAEVTR 903

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +   +G     HP+   +  LR+       E+     G  +  A +V+ +Q+  + +G  
Sbjct: 904  DYNRIGLTLRDHPVAFLRDDLRQRKFFSCREAHEARDGKRLDAAGLVLVRQRPGSAEG-- 961

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + ++T  + +       +
Sbjct: 962  VVFLTLEDESGVLNVIIW 979


>gi|256422395|ref|YP_003123048.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588]
 gi|256037303|gb|ACU60847.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588]
          Length = 1055

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 249/1033 (24%), Positives = 450/1033 (43%), Gaps = 67/1033 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V LQV S++S L GA   + ++++ A      IAITD N L   +     A A GI+ I
Sbjct: 3    YVELQVTSNFSFLRGASHPDELVEQAAEYGYKEIAITDRNTLAGIVRAHAAAKAKGIRII 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
              C+LD+                   PS++   +    Y RL  L++   L  + K    
Sbjct: 63   PACRLDLQDG----------------PSLLAYPTDQAAYSRLSSLLTTGNLRAE-KGDCL 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA-EKRLLTFKKLFGDRLYVNLQR- 188
            +    +       + ++         +       + A +  L  +K   G +LY+++ R 
Sbjct: 106  LYKKDVYAYAAGMIFIVVPPE-----QLNTKFDFETAFKNDLKEYKDKLGSQLYLSVTRS 160

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPR 247
            + G D  R  ++ QL+  + +PL ATN+  +   E  +  D+L  V     +     R  
Sbjct: 161  YLGDDHKRLYRLAQLSALYHIPLAATNDVHYHHPERRQLQDILTCVREKCTIYNAGFRLH 220

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + +LK  +EM  +F   PE + N   IA  C F L+    + P  +  E     +  
Sbjct: 221  QNAERHLKTPAEMQRLFRQYPETISNARHIADACRFTLESLKYVYPEELTTEG----RTP 276

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + EL   +  G + R            +     + +EL  I  M ++ YFL V D +++A
Sbjct: 277  QEELTYLSWEGAKERFGDD------IPEKISSAISYELTFIEEMNYAAYFLTVHDIVRFA 330

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  +I    GRGS A S   Y L IT ++P +  LLFERF++  R   PD D+DF  +RR
Sbjct: 331  RSQHIL-CQGRGSAANSTVCYVLGITSVNPTKIDLLFERFISSARNEPPDIDVDFEHERR 389

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV NKYG +R A + T      K A+RDVG+A+ +    ++R+   I        
Sbjct: 390  EEVMQYVFNKYGRDRAAIVATVTQQHQKGAIRDVGKAMGLSVDTINRMSTSIWRYTDEWF 449

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                + +          DP + ++L +++++ G  R    H  G VI    L +L P+  
Sbjct: 450  DEGRLLEH----GLNPEDPHLKKVLALTKQMMGFPRQLGQHTGGFVITQGKLHELCPILN 505

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                +    ++N   I+  G +K D L L  LT ++K+ D   Q       L+ IP DD 
Sbjct: 506  ARMENRTCIEWNKDDIDTLGFMKIDVLALGMLTCIRKAFDLAKQHYGKDYTLANIPEDDP 565

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
              Y +++   T+G+FQ+ES   +  L  ++P    D++  V++ RPGPI   +V+   + 
Sbjct: 566  AVYEMISHADTIGVFQIESRAQQSMLPRLRPQRFYDLVIEVAIVRPGPIQGDMVHPYLRR 625

Query: 667  GK-EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEE 724
               ++     P ++ +LK+T GV ++QEQ M IA   + ++ +EAD LRR+M        
Sbjct: 626  RNGQEAPDYPPQLEDILKKTLGVPLFQEQAMNIAIKAASFTPTEADELRRSMATFRLNGV 685

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            ++K +++ I G + NG     A  IF+ L  F  YGF +SHAA++A++ Y ++++K +YP
Sbjct: 686  IEKFEKKLIDGMTANGYELDFAQRIFKQLKGFGSYGFPESHAASFALLVYVSSYLKCYYP 745

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYYSL 839
              F  A +        +  +   DAR  ++++ P  +N    D  + +       +    
Sbjct: 746  DVFACALLNSMPMGFYQPAQIVSDARAHHVEVRPVDINHSSWDNTLEEKETIPHALRLGF 805

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
              +KG+       ++ A       S+     R     +++  LE L  A A    G  R 
Sbjct: 806  RQVKGLNQEEMDVLLSARKKGI-TSI--LALR--EAGVSQTALEKLADADAFRSIGLDRR 860

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            + L  + ++             +   +F  +    + +  +      ++      +   +
Sbjct: 861  RALWEISSLHD-----------RPIGLFTGQASESTVEQPV-DLPEMSAPEHVVQDYNAM 908

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
                  HP+   +  L  + +   ++      G  +++A +++ +Q+  T  G  + ++T
Sbjct: 909  ALSLKAHPVSFVREKLSLLHVTSVKDLATIPDGMPVKVAGLILVRQRPGTASG--VCFIT 966

Query: 1020 FSEPAKEYEANFF 1032
              +         F
Sbjct: 967  IEDETGCANLVVF 979


>gi|170742616|ref|YP_001771271.1| DNA polymerase III subunit alpha [Methylobacterium sp. 4-46]
 gi|168196890|gb|ACA18837.1| DNA polymerase III, alpha subunit [Methylobacterium sp. 4-46]
          Length = 1075

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 267/1042 (25%), Positives = 444/1042 (42%), Gaps = 77/1042 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V LQV + YS L GA S   +    A     A+ +TD +++   ++  + A A G + + 
Sbjct: 3    VELQVTTHYSFLRGASSPEELFATAALLGLTALGVTDRHSVAGLVKAHEAARATGCRLVA 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+LD+             +      ++++  +    Y RL  L++       GK    +
Sbjct: 63   GCRLDL-------------SGPDAGTALLVYPTDRAAYGRLCRLLTLGKGR-AGKGGCTL 108

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE-KRLLTFKKLFGDRLYVNLQ-RH 189
             LS L     EGLI +              +    A  +RL   +++FG R +  L  R 
Sbjct: 109  DLSDLAAW-REGLIAV-----------LLADRPDEALPRRLGRLREVFGRRAHCALTRRF 156

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
               D+ R  +V  LA    +P VAT + L    E     DV+  +   T +      R  
Sbjct: 157  GVNDQLRLDRVADLARAARIPTVATGDVLCHVPERRLLQDVVTCIRLGTTIDAAGFARER 216

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                +L+  +E   +F+  PEA+E    IA  C F L       P  + ++     +   
Sbjct: 217  HAGRHLQAPAETARLFARHPEAVERARAIAEACRFSLDDLTYTYPDEVGEDG----RSAL 272

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L    + G   R   G        ++  +++  E  +IAR  ++ YFL V   +++A+
Sbjct: 273  ERLETMTLEGAARRYPDGV------PEEVHRQIRHEFELIARKGYAPYFLTVEAIVRFAQ 326

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I    GRGS A SV  Y L IT IDP+R  LLFERF++ +R   PD D+DF  +RR+
Sbjct: 327  RQGIL-CQGRGSAANSVVCYCLGITAIDPVRQKLLFERFVSDNRDEPPDIDVDFEHERRE 385

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI++V   YG  R A   T     A+ A+R+VG+ L +P      L +L+       V 
Sbjct: 386  EVIQWVYATYGRHRAALTATVIRYGARGAVREVGKVLGVPEDVTGALARLVWGWSREGVG 445

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                  ++R     LAD  +   L++++ L G  RH   H  G V+    L +L P+   
Sbjct: 446  ----EREARALNLNLADRRLRLTLDLARALIGTPRHLGQHPGGFVLTLDRLDELCPITPA 501

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG----VKVDLSLIPFD 604
               +    +++   IE    +K D LGL  L  L+++ + L +         +++ IP +
Sbjct: 502  TMENRQTIEWDKDDIEALRFMKVDVLGLGMLGCLRRAFELLGEHRGETDPPREIAAIPPE 561

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  TY ++    TLG+FQ+ES      L  MQP  + D+   V++ RPGPI   +V+   
Sbjct: 562  DEATYAMIRRADTLGVFQIESRAQMAMLPRMQPRNLYDLTIEVAVVRPGPIQGDMVHPYL 621

Query: 665  KNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            +  +  E+       +  +L+ T GV ++QEQ MQ+A + +G++ +EAD LRRAM     
Sbjct: 622  RRRRGIERPEYPSEALRSVLERTLGVPLFQEQAMQVAIVAAGFTPAEADGLRRAMATFKA 681

Query: 723  E-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              ++   +E+ I+G  +NG +   A   F  L  F  YGF +SHAA++A+I+Y ++W+K 
Sbjct: 682  NGKIGLYREKLIAGMIRNGYAADFAERTFRQLEGFGSYGFPESHAASFALIAYASSWLKC 741

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIY 836
            H+P  F  A +  +        +  +DAR+  + + P  VN    D  +         + 
Sbjct: 742  HHPDVFCCALLNAQPMGFYAPAQIVRDARRHGVPVRPIDVNASRWDCTLEKAEGPRLAVR 801

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  ++G+       I        F S ED   R     +  R LESL  A A    G 
Sbjct: 802  LGLRLVRGLANAEGARIATVREADLFRSPEDLWRRT---AVPLRALESLAAADAFGSLGL 858

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-----FSDKITLEKFSVENSSVR 951
             R + L ++  +                 +FA                    +       
Sbjct: 859  GRREALWAIRGL-----------APVPLPLFAAADAREAAIRPELDEPAVALAPMPEGAG 907

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               + R        HP+   +P L + G+           G  + +A +V+ +Q+  + K
Sbjct: 908  VVADYRAASLSLGRHPVAFLRPDLARDGMSACAALRRLRDGARVTVAGLVLVRQKPGSAK 967

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G  + ++T  +         +P
Sbjct: 968  G--VMFITLEDETDVANLVVWP 987


>gi|255535519|ref|YP_003095890.1| DNA polymerase III alpha subunit [Flavobacteriaceae bacterium
            3519-10]
 gi|255341715|gb|ACU07828.1| DNA polymerase III alpha subunit [Flavobacteriaceae bacterium
            3519-10]
          Length = 1567

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 319/1056 (30%), Positives = 527/1056 (49%), Gaps = 83/1056 (7%)

Query: 15   QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA--AGIQ---- 68
              HS YS L+ +  +N ++ K   +   A+ I D  N+  A +F  +     A I+    
Sbjct: 267  HNHSIYSSLQSSTHINELISKAMDNDLKAVGIVDLGNMMGAFKFVSEVEKTNAQIKKTYQ 326

Query: 69   ---------------------------PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
                                       P+IGC+  I   D  +     K       ++VL
Sbjct: 327  TYLENKEKADREGTAFTEKEPRKEPLIPVIGCEFYIS--DRPEQKQFTKDDPDRRTNVVL 384

Query: 102  LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
            L     GY+ L++L S  Y+        RI    + E   + LI LT G+ G +      
Sbjct: 385  LAKNFSGYKNLVKLSSLGYVNGFYFGVPRISRKMIAEF-KDNLIALTAGTLGDVPSTVLE 443

Query: 162  NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFL 220
               Q  E+    +K  FG+  YV +Q H   +    ++V +  A  +++ ++A N + + 
Sbjct: 444  FGEQKGEEVFKWWKNTFGEDFYVQIQNHEVEEEEHLNEVLLGFADQYDVKILAQNETFYT 503

Query: 221  SEEDYEAHDVLMAVAHSTVVSQK-------DRPRVTPDHYLKNRSEMVSIFSDLPEALEN 273
            ++ D    D+L  +     +S          R   +   Y+KN  E+   F   P+A E 
Sbjct: 504  NKSDANIQDILYCIKDGEKLSSPVGKGFGKRRGLPSKQFYIKNTDELKQSFIQFPDAFEA 563

Query: 274  TVEIARRCSFI--------LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
              E+  +             +   P      E + D  ++ E   LR+   AG E R  +
Sbjct: 564  YTELLGKFEPYTLKRDVLLPEFDIPEEFLHDEDKTDGGKRGENAYLRHLTYAGAEKRYPE 623

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                      + R+RLDFEL VIA+  + GYFLIV DF   A+K  + VGPGRGS AGS 
Sbjct: 624  -------ITDEIRKRLDFELEVIAKTGYPGYFLIVQDFCNEARKMGVWVGPGRGSAAGSA 676

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
             AY   IT++DP+ ++LLFERFLNP+R+SMPD DIDF  + RD++I++V  KYG   VAQ
Sbjct: 677  VAYCTGITNVDPIEYNLLFERFLNPERISMPDIDIDFDDEGRDKIIKWVVEKYGKNNVAQ 736

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD---SRFREAR 502
            IIT+  L  K+A++D GR L +   + + + KLIP+ P   ++      +      +   
Sbjct: 737  IITYSVLGGKSAIKDAGRVLDLSIPETNNIAKLIPSAPGMNIAKAFSKFEKLPPEDKVLA 796

Query: 503  LAD--------PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS-DL 553
                            +L  +Q++EG  R+   HA G++I    +S L+P+    +  D+
Sbjct: 797  QEMKDILANPTDERYDVLYAAQRMEGCIRNTGIHACGVIITPEDISNLIPITIAAKDPDI 856

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLL 612
             V+QF+    E AGL+K DFLGL+TLT+++ ++  + +R   ++D+  +P DD +TY L 
Sbjct: 857  LVSQFDNSVAESAGLLKMDFLGLRTLTIIKHAIKLIKERHGTEIDIDHVPLDDAKTYQLF 916

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
                T+GIFQ ES GM++ +  ++P    D+IA+ +LYRPGPI  I  + NRKN  E+ V
Sbjct: 917  QEGRTIGIFQYESPGMQKYMRELKPTKFADLIAMNALYRPGPIKYIPNFINRKNEIEETV 976

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
                     L+ET G+ +YQEQVM ++Q L+ ++  EAD LR+AMGKK +  +DK   +F
Sbjct: 977  YDLEETKEFLEETYGITVYQEQVMLLSQKLANFTKGEADTLRKAMGKKDRATLDKMYPKF 1036

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            +    KN ++      I++    FA+Y FNKSH+  YA+I+Y TA++K +YP E++A+ M
Sbjct: 1037 LEEGQKNNLNVDKLNKIWKDWEAFAEYAFNKSHSTCYALIAYHTAYLKANYPAEYMASVM 1096

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTAR 851
            T  ++N ++I  F +D +   + ++ P+VN    +F V +  +I + L AIKG+G+  + 
Sbjct: 1097 TNNLNNTKQITMFMEDCKSIGVDVLGPAVNESQYEFSVNEKGQIRFGLGAIKGIGSGPSE 1156

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQ------- 903
             I++   ++ + ++ DF  ++ S ++N+RV ESLV AGA D    Y R Q          
Sbjct: 1157 AIVDGRKNEKYKNIYDFFEKIPSSQMNKRVAESLVVAGAFDEVDRYHRAQYFDIDITGKT 1216

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAH-EKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
            +++ + +Y Q  + ++     ++FA   +    ++  +       +      E+ ++GFY
Sbjct: 1217 TIERLLRYGQSFQDSKNEIENSLFADFAEEVKIEQPKINPAPEWQNMHMLNKEKEIIGFY 1276

Query: 963  FSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRL 997
             S HPLD Y+   + + G    +E +   +   + +
Sbjct: 1277 LSAHPLDEYRFQYQFLQGALSKKEILEGKKDEPVEI 1312



 Score = 41.7 bits (96), Expect = 0.62,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 981  KGYEESVATIRGN-NIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEY 1027
              ++E  A         +A +V     K  +  G +I +VT  + +  Y
Sbjct: 1389 LSWKEKQALKNNTPEYMVAGLVTEYTVKDGKNSGEKIAFVTLEDYSGSY 1437


>gi|325168586|ref|YP_004280376.1| DNA polymerase III alpha chain [Agrobacterium sp. H13-3]
 gi|325064309|gb|ADY67998.1| DNA polymerase III, alpha chain [Agrobacterium sp. H13-3]
          Length = 1085

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 270/1042 (25%), Positives = 447/1042 (42%), Gaps = 78/1042 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  LQV + +S L GA S   + D        AI + D N+L   +   + + A G++ 
Sbjct: 2    SYAELQVTTHFSFLRGASSAQELFDTAKLLGISAIGVVDRNSLAGIVRALEASRATGLRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC+LD+                    S+++       Y RL  L++        K + 
Sbjct: 62   VVGCRLDLADGM----------------SLLVYPMDRPAYSRLTRLITLGKSRGG-KNNC 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
             +    +    +EG+I +       +              +L     +FGDR YV+L  R
Sbjct: 105  ILHWDDVMAY-SEGMIGIL------VPDL----PDATCAAQLRKLAHVFGDRAYVSLCLR 153

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPR 247
             R  D+ R  ++  +A    +  V TN+ LF      +  D++  + H+T +        
Sbjct: 154  RRPNDQMRLHEISNMAARFRVKTVVTNDVLFHEPGRRQLQDIVTCIRHNTTIDDVGFERE 213

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               D YLK   EM  +F   PEAL  ++EI RRC F L+      P        D Q   
Sbjct: 214  RHADRYLKPPEEMARLFPRYPEALARSMEIVRRCKFSLEELTYQYPEEAIVPGKDAQASL 273

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+            R  +G         D  + +  EL++I  MK++ YFL V   +++A
Sbjct: 274  EHY----VWECAPDRYPEGL------PPDVLKTVRHELDLIRTMKYAPYFLTVFSIVRFA 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I    GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +RR
Sbjct: 324  RSQGIL-CQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERR 382

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+++   Y H++ A   T    +AK A+RDVG+AL +P   +  L   + +      
Sbjct: 383  EEVIQWIYKTYRHDKAALCATVTRYRAKGAIRDVGKALGLPEDVIKALSSGMWSW----- 437

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            S +    + R       D  +   L+++Q+L G  RH   H  G V+    L  LVP+  
Sbjct: 438  SEEVPDRNIRELNLNPDDRRLALTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEP 497

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
                D  + +++   +E    +K D L L  LT + K+   + + +G  +DLS I  +D 
Sbjct: 498  ATMKDRQIIEWDKDDVEALKFMKVDVLALGMLTCMAKAFHLIREDKGENLDLSTIQQEDA 557

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 558  ATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPYLRR 617

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE- 723
            + GKE +    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M       
Sbjct: 618  REGKEPVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFTG 677

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             + + KE+ +SG  KNG S   A   F  L  F  YGF +SHAA++A+I+Y + ++K HY
Sbjct: 678  GVSRFKEKLVSGMVKNGYSAEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYIKCHY 737

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------NRIYY 837
            P  F AA +  +        +   DA +  +++ P  VN    D  +        + +  
Sbjct: 738  PDVFCAALLNSQPMGFYAPAQIVGDAIKHGVEVRPVCVNRSRWDCTLEKIGSIDRHAVRL 797

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGY 896
                +KG+    A  I+ A  + PF S++D   R     +    L  L  A A       
Sbjct: 798  GFRQVKGLAVADAARIVTARMNSPFLSVDDMWRR---SSVPTEALVQLAEADAFLPSLKL 854

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV-----ENSSVR 951
             R   L ++  ++                +FA         I  ++              
Sbjct: 855  ERRDALWAIKALRDE-----------PLPLFAAATEREMAAIAEQQEPEVALRQMTDGHN 903

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +    G     HP+   +  L    I    E++    G  +  A +V+ +Q+  + K
Sbjct: 904  VIEDYSHTGLTLRQHPVAFLRRDLSARNIIPCAEAMNARDGRWVYTAGLVLVRQKPGSAK 963

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G  + ++T  +         +P
Sbjct: 964  G--VMFITIEDETGPANIVVWP 983


>gi|262196390|ref|YP_003267599.1| DNA polymerase III subunit alpha [Haliangium ochraceum DSM 14365]
 gi|262079737|gb|ACY15706.1| DNA polymerase III, alpha subunit [Haliangium ochraceum DSM 14365]
          Length = 1074

 Score =  575 bits (1483), Expect = e-161,   Method: Composition-based stats.
 Identities = 284/1075 (26%), Positives = 458/1075 (42%), Gaps = 110/1075 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
             ++  L   S++S LEGA   + ++++  A    A+A++D + L+  +     A   G +
Sbjct: 2    STYAPLWCKSNFSFLEGASHPDELIEEAHALGLRALALSDRDGLYGVVRAHVCAEKIGFK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I G Q+ +D                    IVLL     GY  L  L+++       K S
Sbjct: 62   LIHGAQVSVDDGS----------------QIVLLCRDRAGYANLCHLLTKGRRRSD-KGS 104

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSG---------------PIDRAFFFNSSQVAEKRLLT 173
             ++    +      GLI L GG+                  I R           +    
Sbjct: 105  SQVSWREVCA-HAGGLIALWGGAGSLLTRPGENRPGGVPADIPRPLGGRPQSYLGRVADD 163

Query: 174  FKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
             ++ FGD LY    RHR  +    E+++   A    LP+ A    L+ S       DVL 
Sbjct: 164  LREAFGDALYALCARHREAEEVVTEARLRARAERFGLPVAAAVEVLYHSRARRPLQDVLT 223

Query: 233  AVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
             + H   +S   R  R   +H L +      +F D P A+  T++IA RC F L      
Sbjct: 224  CLRHHVTLSTAGRYIRANDEHDLHSPQAFGILFDDDPAAVARTLDIAARCQFGLGEIRYR 283

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             P           K     LR  +  G   R       +G    D R +L  EL +I  +
Sbjct: 284  YPSERLPSG----KTTSEWLRELSFEGARWRY------RGEVPADVRAQLTRELALIDEL 333

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             + GYFL + + +++ +   I    GRGS A S   Y L IT +DP+R  LLFERFL+ +
Sbjct: 334  DYGGYFLTMYEIVRFCRAQGIL-CQGRGSAANSAVCYCLDITAVDPVRMGLLFERFLSRE 392

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD D+D   DRR+EVI++V +KYG +  A +      + ++A+RDVG+ L +P + 
Sbjct: 393  RAEPPDIDLDIEHDRREEVIQHVYDKYGRDHAAMVAVVIRYRPRSAVRDVGKVLGIPATS 452

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            +DR  KL+ +           A+           P+   L  ++ ++    RH S H  G
Sbjct: 453  LDRCAKLLSHYEGIT------AEALEQAGMDPHLPAHQHLGRLASEILDFPRHLSIHPGG 506

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LA 590
             ++G  P+  LVP+     +   V Q++   +E  GL K D LGL  L  L +  D    
Sbjct: 507  FLLGHEPVHSLVPIENGAMAGRTVIQWDKNDLEDLGLFKVDLLGLGALNQLHRCFDLVSE 566

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
             RG+ + ++ IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ 
Sbjct: 567  HRGIDLSMATIPADDTATYDMICRADTVGVFQIESRAQMSMLPRLRPRYFYDLVIEVSIV 626

Query: 651  RPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGPI   +V+    R++G EKI   H  ++P+L+ T GV ++QEQVM++A + + Y+  
Sbjct: 627  RPGPITGGMVHPYLRRRHGLEKIEYPHESLEPVLERTLGVPLFQEQVMRLAMVAADYTPG 686

Query: 709  EADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            EAD LRR M    +   +D+ +ER +S  ++ GI+   A  +FE +  F +YGF +SHAA
Sbjct: 687  EADQLRRDMAAWRRSGRIDQHRERLVSAMTRKGIAAEFAERVFEQIRGFGEYGFPESHAA 746

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            ++A+I+Y TA+M+ H+P E+  A +  +            DAR+  + + P  V     D
Sbjct: 747  SFALIAYATAYMRCHFPAEYACALLNAQPMGFYSPATIINDARRHGVSVRPIDVGASAWD 806

Query: 828  FKVGD---------------------------NRIYYSLAAIKGVGTTTARHIMEASADK 860
              +                               I   L  +KG+       I +A A  
Sbjct: 807  CTLEPLPASQRRTTEENGDSGDSDSDAPARICYAIRMGLRYVKGLRRDAGTRIEDARARA 866

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            PF  L DF  R    +L+ R    L  +GAL  FG +R  +L  +   Q+          
Sbjct: 867  PFADLGDFVRRT---RLDERSHTRLAESGALAAFGRNRRDVLWQVRGHQRAKS------- 916

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF---SGHPLDVYKPILRK 977
                     +  +          +  +       + +          GHPL+  +  LR 
Sbjct: 917  ---------DTLSLPQTGPAPSLAQLDQLDEILWDYQA---SLHSTRGHPLEPLRASLRA 964

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              I           G  +R A +V+ +Q+  T  G  + ++T  + +       +
Sbjct: 965  QNIADARSVQRMRHGQRLRYAGLVICRQRPPTAAG--VTFMTLEDESGFVNLVIW 1017


>gi|152980588|ref|YP_001353603.1| DNA polymerase III alpha subunit [Janthinobacterium sp. Marseille]
 gi|151280665|gb|ABR89075.1| DNA polymerase III alpha subunit [Janthinobacterium sp. Marseille]
          Length = 1041

 Score =  575 bits (1483), Expect = e-161,   Method: Composition-based stats.
 Identities = 264/1051 (25%), Positives = 448/1051 (42%), Gaps = 95/1051 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PS+  L   S++S L GA     ++++       ++AITD  +L   +    +A    + 
Sbjct: 6    PSYAELHCRSNFSFLHGASHPEELVERACDLGYSSLAITDECSLAGVVRAHVEAKKRQLH 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG ++ +                     ++ L     GY  L EL++        K S
Sbjct: 66   LIIGSEIKLACGSK----------------LLFLACNRNGYGNLSELITLARRRAA-KGS 108

Query: 129  VRICLSWLQEIGT-EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              +  S L        L  L    +  + +     S+     +    ++ F  R ++ ++
Sbjct: 109  YTLYRSDLDAHAAIAHLRHLPDCLTILLPQ--RGCSAVELAGQAAWLQQNFAGRAWIAVE 166

Query: 188  -RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
              H   D +  +Q+ ++A    LPLVA  + L          D L AV     +++    
Sbjct: 167  LLHWSGDEHWLAQLKEIAAQQALPLVAMGDVLMHVRSRKPLQDTLTAVRLGKSIAECGLD 226

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                      RS +          L+ ++EIA  C+F L+      P  I    + +   
Sbjct: 227  LQPNA-EQHLRSRLRLSQIYPAALLKESLEIAALCTFSLEELRYQYPEEIVPAGETMS-- 283

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     G   R  +  I      +++  R++ EL++I  + +  YFL V D +++
Sbjct: 284  --AYLRRLVYEGATQRRYKNGI-----PEEFHVRIEHELSLIQELHYEPYFLTVYDIVKF 336

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I    GRGS A S+  Y L IT++DP R S+LFERF++ +R   PD D+DF   R
Sbjct: 337  ARSEGIL-CQGRGSAANSIVCYCLGITEVDPARSSVLFERFISRERNEPPDIDVDFEHQR 395

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++Y+  KYG  R A      + + ++A++DVG+AL + + Q++RL +         
Sbjct: 396  REEVMQYIYQKYGRHRAALTAALITYRPRSAMKDVGKALGLDFEQINRLSQSHKWWDGKQ 455

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +    + ++          P V +L+E++Q L G  RH S H  G VI    L++LVP+ 
Sbjct: 456  IGADRLQEN----GFDPESPIVQKLVELTQTLIGFPRHLSQHTGGFVISQDSLARLVPIE 511

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                 D  V +++   ++  GL+K D L L  L+ ++++L+ +  +RG   +L  I  DD
Sbjct: 512  NASMKDRSVIEWDKDDLDALGLLKVDVLALGMLSAIRRALEMISLRRGHDFELQDIHDDD 571

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--- 662
              TY ++    T+G+FQ+ES      L  ++P C  D++  V++ RPGPI   +V+    
Sbjct: 572  AATYEMICAADTIGVFQIESRAQMSMLPRLRPKCYYDLVIQVAIVRPGPIQGGMVHPYLK 631

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721
            NR+  K+ I+     I+  L  T GV I+QEQVMQIA L +GY+  EAD LRR+M     
Sbjct: 632  NRRMNKDDIIYPGDEIEEALSRTCGVPIFQEQVMQIAVLAAGYTAGEADDLRRSMAAWKR 691

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K  ++K + +  +G   NG     A  +FE +  F +YGF +SHAA++A++ Y +AW+K 
Sbjct: 692  KGNLEKHEIKLKTGLINNGYDPGFADRLFEQIKGFGEYGFPESHAASFALLVYVSAWIKR 751

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----NRIY 836
            H P  FLAA +  +        +  QDA++  + + P  +     +  + D       + 
Sbjct: 752  HEPAAFLAALLNSQPMGFYSASQLVQDAKRHGVPVRPVDIMLSETESTMEDMHAQYPAVR 811

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG- 895
              L  +KG+ T  A  I++A   +PF S +D   R                   LD    
Sbjct: 812  LGLHMVKGLSTDAAERIIDARLRRPFASTDDLARRA-----------------VLDQHEL 854

Query: 896  -------------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
                           R Q    +  +                 +        +  I    
Sbjct: 855  GALARANALLALTGHRRQAKWEVAAML------------PPPALLRDAPIIEAPVI---- 898

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                +       +    G     HPL + +P L++M +    E          R   +V 
Sbjct: 899  LPPASEGQEIIADYASTGLTLQRHPLALLRPRLKQMNLSTALEMKGFADRKLARTTGIVT 958

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +Q+  T KG+   +VT  +         +P
Sbjct: 959  MRQRPPTAKGTM--FVTLEDETGITNVIIWP 987


>gi|327188040|gb|EGE55268.1| DNA polymerase III, alpha chain [Rhizobium etli CNPAF512]
          Length = 1084

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 266/1042 (25%), Positives = 448/1042 (42%), Gaps = 78/1042 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  LQV + +S L GA S   + +        A+ + D N+L   +   + + A G++ 
Sbjct: 2    SYAELQVTTHFSFLRGASSAQELFETAKQLGIEALGVVDRNSLAGIVRALEASRATGLRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC+LD+                    S+++       Y RL  L++        K + 
Sbjct: 62   VVGCRLDLADGM----------------SVLVYPMDRSAYSRLTRLITLGKSRGG-KNNC 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
             +    +    +EG+I +       +          +   +L    +LFGDR YV+L  R
Sbjct: 105  ILHWDDIVAY-SEGMIGIL------VPDL----PDDLCAIQLRKMAELFGDRAYVSLCLR 153

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPR 247
             R  D+ R  ++  +A   ++  V TN+ LF      +  D++  + H+T +        
Sbjct: 154  RRPNDQLRLHEISNMAARFKVRTVVTNDVLFHEPGRRQLQDIVTCIRHNTTIDDVGFERE 213

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               D YLK   EM  +F    +AL  T+EI  RC F L+      P        D Q   
Sbjct: 214  RHADRYLKPPEEMARLFPRYAQALARTLEIVHRCKFSLEELTYQYPEEAIVPGKDAQASL 273

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+            R  +G         D  + +  EL++I  MK++ YFL V   +++A
Sbjct: 274  EHY----VWECAPDRYPEGL------PPDVLKTVRHELDLIRTMKYAPYFLTVFSIVRFA 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I    GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +RR
Sbjct: 324  RSQGIL-CQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERR 382

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+++   Y  E+ A   T    +AK A+RDVG+AL +P   +  L   + +      
Sbjct: 383  EEVIQWIYKTYTKEKAALCATVTRYRAKGAIRDVGKALGLPEDVIKALSSGMWSW----- 437

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            S +    + R       D  +   L+++Q+L G  RH   H  G V+    L  LVP+  
Sbjct: 438  SEEIPDRNIRELNLNPDDRRLALTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEP 497

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606
                D  + +++   +E    +K D L L  LT + K+ D + +   +  DLS I  +D 
Sbjct: 498  ATMKDRQIIEWDKDDVEALKFMKVDVLALGMLTCMAKAFDLIREHKGQDLDLSKISQEDA 557

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 558  ATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPYLRR 617

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE- 723
            + GKE +    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M       
Sbjct: 618  REGKEPVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFTG 677

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             + + K++ +SG  KNG S   A   F  L  F  YGF +SHAA++A+I+Y + ++K H 
Sbjct: 678  GVSRFKDKLVSGMVKNGYSAEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYIKCHC 737

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRIYY 837
            P  F AA +  +        +   DA +  +++ P  VN    D  +        + +  
Sbjct: 738  PDVFCAALLNSQPMGFYAPAQIVGDAIKHGVEVRPVCVNRSRWDCTLERIGGSDRHAVRL 797

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGY 896
                +KG+    A  I+ A  + PF S++D   R     +    L  L  A A       
Sbjct: 798  GFRQVKGLAVADAARIVAARMNNPFASVDDMWRR---SSVPTEALVQLAEADAFLPSLKL 854

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV-----ENSSVR 951
             R   L ++  ++                +FA      +  I  ++         N    
Sbjct: 855  ERRDALWAIKALRDE-----------PLPLFAAAAEREATAIAEQQEPEVALRQMNDGHN 903

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +   +G     HP+   +  L    I    E++    G  +  A +V+ +Q+  + K
Sbjct: 904  VIEDYSHIGLTLRQHPVAFLRKGLSVRNIITCAEAMNARDGRWVYTAGLVLVRQKPGSAK 963

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G  + ++T  +         +P
Sbjct: 964  G--VMFITIEDETGPANVVVWP 983


>gi|323466669|gb|ADX70356.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            helveticus H10]
          Length = 1041

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 330/1024 (32%), Positives = 536/1024 (52%), Gaps = 44/1024 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    ++++++        A+ + D N  +  + F + A  AGI+P++G 
Sbjct: 12   LQNLSSFTLLDSPTKVSDLIETAKKRGYQAVGLADVNVTYGLVNFYELAKKAGIKPLLGM 71

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-YLLDQGKQSVRIC 132
            QL ++          G         ++    T  GY  L+ L S + +L D G+ +  + 
Sbjct: 72   QLRLN----------GLVDSTQKYDLIAFAKTNAGYHNLLRLSSAINFLTDNGQNNNVLT 121

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +   + L+++   +   +   F  N  Q+    +   K+L  D LY+ +  +   
Sbjct: 122  LKDLSKYLADLLLIVPANTKSELLSLFETNK-QLGSDLIRDLKELTSD-LYLGVYANPSM 179

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPD 251
             +     V  L+   +LPL+AT +S +L+  D      L A+A    +       +    
Sbjct: 180  -QNYIDYVRSLSKQFDLPLLATEDSEYLNPHDQFLQKTLRAIATGDKIQDALPLAKQEGS 238

Query: 252  HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            HYL    +++  +   DL +A+ NT ++A +C+  +    P+LP++ +K+        E 
Sbjct: 239  HYLVEAEQLLQRYHEFDLDDAVNNTWQVAEKCNAEVVFQKPVLPKYHQKKF----ATSEE 294

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L   A  GL+ R  Q          +Y++RL++EL VI +M F  YFLIV D I +  +
Sbjct: 295  YLHYLAQTGLQQRFGQ-----NKIPAEYQKRLNYELRVINQMGFDDYFLIVWDVINYCHR 349

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS  GS+ +Y+L IT++DP+ ++LLFERFLNP R  MPD D+D    +RD 
Sbjct: 350  VQITTGPGRGSACGSLVSYSLRITEVDPIEYNLLFERFLNPSRHEMPDIDLDIPDVQRDT 409

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +   ++ +    IP         
Sbjct: 410  VIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEIKKWADAIPYSKGKITLK 469

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +A       R    A P    L + +  LEGL RH S HAAG+VI D  ++ +  +    
Sbjct: 470  EAYQQSRELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDNSIAGISGLQ-AG 528

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
               +PVTQ   K++E  GL+K DFLGL+ LT+L   L+ + Q+G+K+D + IP +D +T 
Sbjct: 529  PLGIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILNLIRQQGIKIDPNQIPLNDAQTL 588

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T  +FQ ES G+RQ L  + PD  ED++A+ ++YRPGP+ NI  +  RKNG+E
Sbjct: 589  QLFQQGKTDAVFQFESVGIRQVLRKLHPDNFEDLVAVNAIYRPGPMQNIDAFVRRKNGQE 648

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ ++++K
Sbjct: 649  AVRYPDPSLKKILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQEK 708

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FI+   K G +K IA  +++ + +FA+YGFN+SHA AY  I+Y  A++K HYP  F  
Sbjct: 709  GKFIADTIKQGHTKAIAERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPAAFYT 768

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +        K + +   A++ NI+I+PP +N   +++ + + +I   L AIKG+    
Sbjct: 769  AMLN--SAAGAKAQDYIMQAQEANIKILPPDINHSSLEYTLKNKQILVGLKAIKGLRVDF 826

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            AR I  A   KP+ SL DF  R+D K L    +++L+ AGA D    +R +LL + D I 
Sbjct: 827  AREI--ADNTKPYKSLNDFLRRIDPKFLQADAIKALIMAGAFDGLEKNRNELLVNCDEII 884

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               Q   +N      ++             L+       + +   E++VLGF  +  PL 
Sbjct: 885  ANVQLTGRN-----ISL-----SEILGNAPLKPADEPTGAEKAAMEEKVLGFSTTTSPLI 934

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K   +   +      G  +     ++  +Q +T+ G  + + +F++ + E E 
Sbjct: 935  AVQKFAQKFNSRPLNQFQLNESGVGV---GKLIRFKQIRTKNGKNMAFASFADTSGEQEV 991

Query: 1030 NFFP 1033
              FP
Sbjct: 992  VIFP 995


>gi|325845299|ref|ZP_08168602.1| DNA polymerase III subunit alpha [Turicibacter sp. HGF1]
 gi|325488660|gb|EGC91066.1| DNA polymerase III subunit alpha [Turicibacter sp. HGF1]
          Length = 1010

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 334/1024 (32%), Positives = 562/1024 (54%), Gaps = 56/1024 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQV S+YSLL  ++ +  ++D    +Q   +A+ +   + SA++F        ++P
Sbjct: 2    SFVHLQVRSAYSLLSSSIKIKELVDLALENQMSCLALVEEGTMHSAIKFYNACRRVNVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG  +++     +                V+L     GYQRL+++ S +      KQ  
Sbjct: 62   LIGMSVNVQGDSFIDEW-------------VILARNQCGYQRLLKIASFI-----AKQEG 103

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    +     + L+++T G  G +         +   +   ++ K     LY+ L R 
Sbjct: 104  VVLYEQVLPFVQD-LVVITSGEHGMLCSGIEEYKEERLLQYYESYLKSIP-HLYIGLMRV 161

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                      ++  A     P+VA N+  +L +ED +   +L A+  +  V  ++ P V 
Sbjct: 162  NQRTYELSKHLISFASNVNRPIVALNDVRYLKKEDAKTLTLLQAIKQNQSV--EELPLVD 219

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + Y K+  +M  +F+D+P AL  T +IA  C   + +H  +LP++   E        ++
Sbjct: 220  YERYFKSECQMKELFADVPNALMQTEQIANDCEVEIPLHQSLLPKYQTPEGV----SSDS 275

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L      GLE R             +Y  RL +EL+VI +M FS YFLIV DF+++AK 
Sbjct: 276  YLEALCFKGLEKRYGHL---------EYANRLKYELSVIHKMGFSDYFLIVWDFVRYAKS 326

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            ++I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R++MPD DIDF  +RRDE
Sbjct: 327  HDIYVGPGRGSAAGSLVAYVLGITNVDPIKYELLFERFLNPERITMPDIDIDFQDNRRDE 386

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+YVQNKYG   V QI TFG+ Q+++A RD+ R  Q+  + ++++   I +        
Sbjct: 387  VIQYVQNKYGSHCVVQIATFGTFQSRSAWRDLARVHQVETTLINKVASFIYSGS---TLK 443

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +        R+     P ++ + + ++K+EGL RH S HAAG++I D  L+    +  + 
Sbjct: 444  EIYEQTKGLRDFFSTYPKLEAIYKEAEKIEGLPRHTSIHAAGVIISDHDLTDYTAI-MEG 502

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
             + + V+Q+  + +E  GL+K DFLGLK L +LQ+    +      + D++ IP+DD +T
Sbjct: 503  PTGIYVSQYEAEDLEMIGLLKMDFLGLKNLNMLQQITTLIKSSVAPEFDINKIPYDDLKT 562

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            Y +++   T G+FQLES GMRQ L  ++P+C+EDIIA  +L+RPGP++ I ++  RK+ +
Sbjct: 563  YEMISQGQTTGVFQLESEGMRQVLRAVRPNCLEDIIACNALFRPGPMEGIPLFAARKHHE 622

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            + I   HP +  +L +T G+I+YQEQ+MQIA ++SGYSL EADVLRRA+ KK KE ++++
Sbjct: 623  QPIEYYHPSLQYILSKTYGIIVYQEQIMQIANVVSGYSLGEADVLRRAVSKKKKEILERE 682

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            ++ F+  A + G  + IA  ++EL+ KFA+YGFN+SHA AY++I+YQ A++K HYP  F+
Sbjct: 683  QKTFVEKAIERGYHQEIATQLYELILKFANYGFNRSHAVAYSMIAYQMAYLKRHYPSYFM 742

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
              +++  + +     ++ ++A+Q +I ++PPS+N+  + +++ +  I +SL  IK +G  
Sbjct: 743  TVALSNVIGSESNTAQYVKEAKQLDILVLPPSINSSGLMYQIENENIRFSLLPIKHIGMN 802

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             AR I+       + S  DF SR     LN+R  E L+  GA+D FGY+R  L  +L  I
Sbjct: 803  LARQIVAERERGLYKSFYDFVSRT-RSFLNQRAYEGLIDVGAMDEFGYNRTTLHHNLTAI 861

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              ++++           +F  +      K TL      +S+ + + E+ +LGFY + HP+
Sbjct: 862  LDFSKYD--------GGLFETDFEIMMMKETL------SSAEKMKREKELLGFYLNSHPI 907

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             + +   ++ G     + +     + I     V   ++ + +KG  + ++  S+      
Sbjct: 908  HLMRDQAKEKGWYFPSDLIHL-NVSTITCVGFVEKFREIRDKKGKLMAFMDISDENGTVS 966

Query: 1029 ANFF 1032
               F
Sbjct: 967  VTIF 970


>gi|108761967|ref|YP_632162.1| DNA polymerase III subunit alpha [Myxococcus xanthus DK 1622]
 gi|108465847|gb|ABF91032.1| DNA polymerase III, alpha subunit [Myxococcus xanthus DK 1622]
          Length = 1013

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 271/1032 (26%), Positives = 462/1032 (44%), Gaps = 76/1032 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L   S++S L GA     ++   A     A+A+TD + L+  ++    A   G++ 
Sbjct: 2    DYAELVCRSNFSFLRGASHPEELVATAARLGLGALALTDADGLYGVVKAHLAAKEHGVRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +L ++                  P +V+  +   GY  L  LVS+  +    K   
Sbjct: 62   ILGAELTLEDG----------------PPVVVYAADGTGYSNLCALVSQSRMT-HPKGEA 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    + +         + G             +    +++++  + F +R +V + R 
Sbjct: 105  GLPWRAVADR--------SAGLL-------ALLPAPAPFEQVVSLAEAFPERFHVGICRT 149

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPR 247
                D  RE++  +LA    +PLVA N+            DVL+++ H T V +   R  
Sbjct: 150  LSAGDAEREARAERLALELGVPLVAHNDVHTHHRRRQALQDVLVSIRHGTSVDRAGTRLL 209

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               +  LK+  +M  +F+D PEAL    E+A RC   L       P     E     +  
Sbjct: 210  PNAERTLKSPRDMARLFADRPEALARAAELASRCHASLDDLHYRFPEEGLPEG----RTA 265

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  LR     GL  R  +G            ++++ EL +IA + F+GYFL + D +++A
Sbjct: 266  DAHLRVLTYEGLRFRYPEGV------PPAVVKQIEHELKLIAALDFAGYFLALWDIVRFA 319

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I    GRGS A S   YAL IT IDP+R  LLFERFL+ +R   PD D+DF  +RR
Sbjct: 320  RARGIL-CQGRGSAANSAVCYALQITAIDPVRMGLLFERFLSMERKEPPDIDVDFEHERR 378

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV  K+G      +      + + ALR+ G+AL +   QVDRL K+  ++    V
Sbjct: 379  EEVLQYVYEKHGRRHAGMVCEVICYRGRLALRETGKALGLSLDQVDRLSKVSASN-GFDV 437

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            +   + +          D  V + L ++ +LEG  RH S H  G V+   PL++LVP+  
Sbjct: 438  TPDVLRE----AGLSAEDGRVQKTLALAMELEGFPRHLSIHVGGFVMTREPLTELVPVEN 493

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606
                   V Q+    I   GL+K D L L  LT L K    + +   +   L+ +P +D 
Sbjct: 494  AAMPGRTVIQWEKDDINAVGLLKVDLLALGMLTALSKCFALIREHHGRELSLATVPAEDP 553

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
            + Y +L    T+G+FQ+ES      L  ++P    D++  ++L RPGPI   +V+    R
Sbjct: 554  KVYDMLCEADTVGVFQIESRAQMNMLPRLRPRTFYDLVVEIALIRPGPIVGNMVHPFLRR 613

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKE 723
            +NG+E++      +  +L +T GV ++QEQ M++A + +G++  EAD LRR +  K+ + 
Sbjct: 614  RNGQEQVEYPSEAVKEILGKTLGVPLFQEQAMKLAMVAAGFTAGEADGLRRVLSHKRAES 673

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             + + + RF+ G    G ++  A   F+    FA YGF +SH+A++A+I+Y ++W+K HY
Sbjct: 674  MLLQYRGRFVEGCVSRGYTRKQAEEWFDNFRGFAHYGFPESHSASFALIAYASSWLKCHY 733

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--RIYYSLAA 841
            P  F AA +  +            DA++  + + P  V     D  + +    +   L  
Sbjct: 734  PAAFTAALLNSQPMGFYAPHTLVADAQRHGVVVRPVDVRHSSWDCTLEEGGAALRLGLRM 793

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            +KG+G +  R +  A  +  F  + D        +  R  L  L  AGAL     SR Q 
Sbjct: 794  VKGLGESAGRRVATAKREG-FRDVGDLAR---WSRAPRHELTRLALAGALSSLCGSRRQA 849

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L  L  +               +++F           T  +    +   R   +   +G 
Sbjct: 850  LWELQAL----------GPLDSDDLFFGMAMDG----TAVELPSMDVLERVCADYDTVGL 895

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
                HPL++ +P+L++ G    E       G  + +  M++ +Q+  T KG  + +++  
Sbjct: 896  SLEKHPLELLRPVLKQQGAVTAEGLKKVAHGRRVAVGGMLICRQRPPTAKG--LCFISLE 953

Query: 1022 EPAKEYEANFFP 1033
            +          P
Sbjct: 954  DETGIANLVVPP 965


>gi|153010470|ref|YP_001371684.1| DNA polymerase III, alpha subunit [Ochrobactrum anthropi ATCC 49188]
 gi|151562358|gb|ABS15855.1| DNA polymerase III, alpha subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 1059

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 287/1051 (27%), Positives = 462/1051 (43%), Gaps = 91/1051 (8%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P++  LQV S +S L GA S   +    AA    A+A+TD N L   +   + A  AG
Sbjct: 2    SAPAYAELQVTSHFSFLRGASSAEELFAAAAAMGIEALAVTDRNTLAGIVRAHEAAKEAG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ I+GC+LD+                    S+++  +    Y RL  L+S       GK
Sbjct: 62   VRLIVGCRLDLACGM----------------SVLVYPTDRAAYSRLCRLLSLGKGR-AGK 104

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK----RLLTFKKLFGDRL 182
                +    L   G EGLI++                  +A++    RL   +  FGDR 
Sbjct: 105  ARCHLEWDDLVAYG-EGLIVVLA--------------PDLADETCGLRLRRLRDAFGDRA 149

Query: 183  YVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ L  R R  D+ R  ++  LA    +P V TN+ LF         DV+ A+ H+  V 
Sbjct: 150  YLGLTLRRRPNDQMRLWELSTLAAGLGVPTVVTNDVLFHEPGRRILQDVVTAIRHNLTVD 209

Query: 242  Q-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                R     D YLK  +EM  +F+  PEAL  T EIA RC F L       P       
Sbjct: 210  ALGTRRDRHADRYLKPPAEMHRLFARWPEALARTREIADRCRFSLDELRYQYPEER---- 265

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            DD     +  L      G   R  +G         +    L  EL +I ++ ++ YFL V
Sbjct: 266  DDPALTPQETLERLTWEGAASRYPEGV------PDEVTAALKHELALIGKLDYAPYFLTV 319

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
               +++A+   I    GRGS A S   Y L IT IDP R  LLFERF++ +R   PD D+
Sbjct: 320  NSIVRFARSRGIL-CQGRGSAANSAVCYVLGITAIDPGRNDLLFERFVSEERREPPDIDV 378

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EVI++V   YG ER A   T    ++K ALRDVG+AL +P   +  L   + 
Sbjct: 379  DFEHERREEVIQWVYEHYGRERAALTATVIRYRSKGALRDVGKALGLPEDLIQTLSGQLW 438

Query: 481  NDPAHPVSLQAIAD---DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                  V+ Q + D   + + R  RL          ++ +L G  RH S H  G V+   
Sbjct: 439  GWSEAGVTEQQLRDLNLNPQDRRLRLTLE-------LAAQLRGAPRHLSQHPGGFVLTHD 491

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596
             L  LVP+         + +++   I+    +K D L L  L+ +++ LD LA+      
Sbjct: 492  RLDDLVPIEPAAMEGRQIIEWDKDDIDALRFMKVDVLALGMLSCMRRGLDLLAEHKDIRL 551

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            DL+ IP +D  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI 
Sbjct: 552  DLASIPAEDPRTYAMIRKADTLGTFQIESRAQMSMLPRLKPRTYYDLVVQVAIVRPGPIQ 611

Query: 657  NIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
              +V+    R+ G E++    P ++ +L +T GV ++QEQ M++A   +G++  EAD+LR
Sbjct: 612  GDMVHPYLRRREGLEEVDYPRPELEKVLGKTLGVPLFQEQAMRVAIECAGFTAGEADLLR 671

Query: 715  RAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            ++M        + K ++R ISG  + G  +  A   F+ L  F  YGF +SHAA++A+I+
Sbjct: 672  KSMATFKHTGGVSKFRDRLISGMIERGYEQDFAERTFQQLEGFGSYGFPESHAASFALIA 731

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            Y +AW+K  +P  F AA +  +        +  +DAR+  +++ P  +N    D  +   
Sbjct: 732  YASAWLKCWHPDVFCAALLNAQPMGFYAPAQIVRDAREHEVEVRPVCINASRWDCTLEPT 791

Query: 834  ------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +   L  +KG+    A  I+ A  D+ F S++D   R     +    L+ +  
Sbjct: 792  GDESRFAVRLGLRMVKGLANAHAAAIVAAQGDEMFTSVDDLWRRA---GVPVAALDQIAA 848

Query: 888  AGALD-CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS-- 944
            A      FG +R +   ++  ++                +FA         +        
Sbjct: 849  ADGFRPAFGLARREAQWAIKGLRDE-----------ELPLFAAASEREGRTVPELDEPAI 897

Query: 945  ---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                  +      +   +G     HP+   +  L +  I    E++A      +  A +V
Sbjct: 898  ALRAMPAGREVVEDYGHIGLSLRRHPVSFLREDLARRRIVTCAEAMAARDQRWLEAAGIV 957

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +Q+  +  G  + ++T  +         +
Sbjct: 958  LVRQRPGSANG--VMFITLEDETGIANLVVW 986


>gi|68171940|ref|ZP_00545254.1| DNA polymerase III alpha subunit [Ehrlichia chaffeensis str. Sapulpa]
 gi|67998637|gb|EAM85376.1| DNA polymerase III alpha subunit [Ehrlichia chaffeensis str. Sapulpa]
          Length = 1074

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 438/983 (44%), Positives = 628/983 (63%), Gaps = 38/983 (3%)

Query: 54   SALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
             +LEFS  A + G+QPIIGC + +                 ++  +VLLV    GY  ++
Sbjct: 2    GSLEFSDYASSLGVQPIIGCNIMMSYNG------------DSIGELVLLVKDQIGYNNIV 49

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             LVS  +   Q  +  R+ L  L ++  +G+I+LTGG  G + +    N        +  
Sbjct: 50   NLVSNSFKDSQSNKVNRVDLEKLIDL-KDGIIVLTGGHDGFLSQLLLGNVIDYG--IIDK 106

Query: 174  FKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
                F   LYV LQRH   +    E  +V  AY  +LPLVATN+ LF  + D+ AHDVL 
Sbjct: 107  LLLAFNGNLYVELQRHGMEEEKIIEKTLVNFAYEKDLPLVATNDVLFAKKNDFLAHDVLS 166

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
             ++    ++Q+ R   T +HY K+  EM  +F D+PEA+ NTV IA+RCSF+ +   P+L
Sbjct: 167  CISDGNYIAQEGRKMFTEEHYFKSSDEMYRLFKDIPEAVSNTVLIAQRCSFMPETRKPML 226

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P F         K E  EL ++A+ GL+ RL   +++    ++ Y +RL +EL++I  M 
Sbjct: 227  PHFPCSSG----KNESQELISQAINGLDNRLKSKSLSTEQVSK-YYERLHYELDIIISMD 281

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            ++GYFLIV+DFI W+K+N+I VGPGRGSGAGS+ A++L ITD+DP+ F L+FERFLNPDR
Sbjct: 282  YAGYFLIVSDFICWSKRNDIMVGPGRGSGAGSLVAWSLQITDLDPIEFGLIFERFLNPDR 341

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
            +SMPDFDIDFCQ++RD VI YV+ KYG   VA IITFG LQAKA LRDVGR +QMPY QV
Sbjct: 342  ISMPDFDIDFCQEKRDYVIEYVRKKYG--YVAHIITFGKLQAKAVLRDVGRVMQMPYFQV 399

Query: 473  DRLCKLIPNDPAHPVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            DR+CK+IP++P  PV+  +AI  D   ++ +  D +V +LLEIS KLEGLYRH S HAAG
Sbjct: 400  DRICKMIPHNPVKPVTLSEAIEMDKNLQKEQDDDETVAKLLEISLKLEGLYRHVSIHAAG 459

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            IVI DR L +L+P+Y D  S LP+TQ+NMK+ EKAGL+KFDFLGL+TLT++ +    + +
Sbjct: 460  IVICDRELEELLPLYYDSTSSLPITQYNMKYTEKAGLVKFDFLGLRTLTVINQICHLVNR 519

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             G  VD+S IP +D +TY +L+   ++G+FQLESSGMR+ +  ++PD I DIIAL+SLYR
Sbjct: 520  GGHSVDISRIPLNDRKTYEMLSAGDSVGVFQLESSGMREVISKLKPDNINDIIALISLYR 579

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+DNI +Y  RK+G EK   IHP+++ +L+ET GVIIYQEQVM+IA++++GYSL EAD
Sbjct: 580  PGPMDNISIYIARKHGFEKPDYIHPILEDVLRETFGVIIYQEQVMEIAKIMAGYSLGEAD 639

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKKIKEEMD Q+  FI+GA  NGI +  A  IF+L+AKFA YGFNKSHAAAYA+
Sbjct: 640  LLRRAMGKKIKEEMDNQRRTFINGAVSNGIEEEKASYIFDLVAKFAGYGFNKSHAAAYAL 699

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ISYQTA++K +Y +EF  ASM L++ + +K++  C  A+   I+I+PP +N+  V F + 
Sbjct: 700  ISYQTAYLKANYTLEFFTASMNLDIMDKDKLEMLCHQAKLHGIEILPPDINSSKVLFTIE 759

Query: 832  D-NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
              + I Y+L A+K VG  +A+ I++  A   +  + DF  RV +K +++R+LES++ AG 
Sbjct: 760  GASSIRYALGALKNVGQHSAKEIVDDVA---YKDIWDFIDRVSTKCVHKRILESIIKAGV 816

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            LD    +R QL +S+       ++ + N      ++F        +   L +        
Sbjct: 817  LDSIHSNRKQLFESVFLFLDIIEYNKYNANFNQFSLFND-----KNHYKLSETDDWTKEE 871

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE-ESVATIRGNNIRLAAMVVSKQQKKT 1009
            +  NE   +GFY + HP++ YK +L K+ I     +  ++       +  ++ + + + T
Sbjct: 872  KLNNEFSSIGFYLNHHPMENYKYLLDKLNIGFIHYDDKSSYNN---VIVGIISNVKVRST 928

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
             K  +   VT S+P   +E  F+
Sbjct: 929  NK-DKFAVVTLSDPFNIHEIVFY 950


>gi|207724510|ref|YP_002254907.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
            MolK2]
 gi|206589731|emb|CAQ36692.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
            MolK2]
          Length = 1081

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 264/1073 (24%), Positives = 433/1073 (40%), Gaps = 111/1073 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA   + ++ +  A    A+A+TD  ++   +     A  AG++
Sbjct: 18   PDYAELHCISNFTFLTGASHPHELVARAKALGYRALALTDECSVAGTVRAHVAAKEAGLK 77

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                     +VLL    +GY  L E +++  L    K  
Sbjct: 78   LIVGSRFTVRDAQGEPWL-----------RLVLLAQDIDGYGNLCECITQARLA-APKGD 125

Query: 129  VRICLSWLQEIGTEGLIMLTG---GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL--Y 183
             R+    L     +GL  L G     +  +         Q    + L  +++FGDRL   
Sbjct: 126  YRLLADDLAA-PADGLAHLRGMPHCLAILLPDY--DPDPQRLRAQALWCRQVFGDRLSMA 182

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            + L      DR+R   V  ++   ++PLVAT +    S +    HDVL A+  S  +++ 
Sbjct: 183  LELPLRHADDRHR-GTVAAVSEQADVPLVATGDVAMHSRQRKPLHDVLTAIRLSRPIAEC 241

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLP---EALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                             ++ F         L  +VE+A  C F L       P  +  E 
Sbjct: 242  GLELAPSAEQAMRTRMQLAFFYQGERGAPLLRRSVELASLCDFSLDEIEYEYPHEVVPEG 301

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                      L  + +AG   R  +            R ++  EL +IA +++  +FL V
Sbjct: 302  ----LTPAAYLHAEVMAGAARRYGK------AIPAKVRAQIAEELALIAELRYEPFFLTV 351

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +++A+  +I    GRGS A S   Y L IT++DP   + LF RFL+  R   PD D+
Sbjct: 352  YDVVRFARSRDIL-CQGRGSAANSAVCYCLGITEVDPESGNTLFARFLSRARNEPPDIDV 410

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR+EVI+Y+  KYG  R A      + + ++ALRDVGRAL +    ++++ K   
Sbjct: 411  DFEHQRREEVIQYIYGKYGLTRTALAAALITYRTRSALRDVGRALGIDLGVIEQVAKAQA 470

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                      A A  +  +      P V R   +  +L G  RH S H  G VI    LS
Sbjct: 471  WWDG----QHAFAQHAGQQGLDPESPLVQRWAGLVGQLRGFPRHLSQHVGGFVIAQGKLS 526

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-------LAQRG 593
            +LVP+      D  V Q++   +E   L+K D L L  LT ++++LD         A+ G
Sbjct: 527  RLVPIENAAMQDRRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDMLDALPGRRARYG 586

Query: 594  VKVDLSLIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                L++      D +TY +++   T+G+FQ+ES   +  L  ++P    D++  V++ R
Sbjct: 587  ASDKLAMQHLPDEDRDTYDMISRAETIGVFQIESRAQQSMLPRLRPRTYYDLVIQVAIVR 646

Query: 652  PGPIDNIVVYNNRKN-------GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            PGPI   +V+   +          + +    P +  +L+ T GV I+QEQVM+IA    G
Sbjct: 647  PGPIQGGMVHPYLQRREAMRNGNPDCVTYPGPEVRAVLERTLGVPIFQEQVMEIAMKAGG 706

Query: 705  YSLSEADVLRRAM--GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            ++  EAD LRR M   K+     + Q+                   +   +  FA+YGF 
Sbjct: 707  FTADEADRLRRDMAAWKRKGNLTEHQERLMQEMVEVRHYDPAFVEALCRQMEGFAEYGFP 766

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            +SHAA +A ++Y ++++K H P  F AA +  +        +  Q+AR+  ++++P  V 
Sbjct: 767  ESHAAGFAKLAYVSSYLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRSRVRVLPADVT 826

Query: 823  TPCVDFKVGD--------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                D  + +          I   L+ I+G+    A  I+ A A  PF S+ED   R   
Sbjct: 827  VSAWDSTLHERPHGAGGQPDIRLGLSRIRGMRPPAAERIVAARAQAPFASVEDLAHRA-- 884

Query: 875  KKLNRRVLESLVFAGALDCFG--------------YSRMQLLQSLDNIQKYAQWVEKNRT 920
                           ALD                   R Q L     +Q+  Q     R 
Sbjct: 885  ---------------ALDRHDLSVLAAANALLPLAGHRRQALWQTLALQEPGQDHALLRQ 929

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
             +                        +       +   LG     HPL + +P L +M  
Sbjct: 930  AR-------------PVEAPLALPAPSLGEEVVADYGSLGLSLQSHPLSLLRPRLERMRF 976

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                       G   R   +V  +Q+  T KG+   +V+  +         +P
Sbjct: 977  VTAATLAGYRNGQLARACGIVTVRQRPGTAKGT--IFVSIEDETGVVNVVLWP 1027


>gi|331699065|ref|YP_004335304.1| Error-prone DNA polymerase [Pseudonocardia dioxanivorans CB1190]
 gi|326953754|gb|AEA27451.1| Error-prone DNA polymerase [Pseudonocardia dioxanivorans CB1190]
          Length = 1142

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 275/1070 (25%), Positives = 454/1070 (42%), Gaps = 94/1070 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS++S L+GA     ++++ A     A+A+TD + ++  + F++ A   G+  I
Sbjct: 64   YAELHCHSNFSFLDGASHPEELVEQAARLGLDALALTDHDGMYGVVRFAEAAAELGVATI 123

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L + +        Q   P P    ++LL    +GY+ L  ++S   L  + K    
Sbjct: 124  FGAELSLGLS-----APQNGVPDPEGSHLLLLARDPDGYRALCRVISAAQLRGREKGRPV 178

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
              +  + E     ++ LTG   G + +A        AE+ L    + FG + + V L   
Sbjct: 179  YRVDEIVEQTAGHVVALTGCRKGAVRQALAAGGPVAAEEALGWLVERFGREGVAVELTHQ 238

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                D  R   +  LA    LP VAT  + +     Y     + AV     + + D    
Sbjct: 239  ALPGDTERNDALAALAARAGLPTVATTGAHYAEPGRYPLAAAMAAVRSRRSLDEADGWLP 298

Query: 249  T--PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                                 P A+     + R C+F + + AP LP F   +  D    
Sbjct: 299  PAGTARLRSGAEMAARFEDRYPGAVARAAALGRECAFTIDLVAPDLPPFEVPDGRD---- 354

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E + L  +   G   R             +  + ++ E+ +I   KF GYFLIV D +++
Sbjct: 355  EASLLWERVRKGAMCRYG-----SQAENPEAAETIEREMEIIVAKKFPGYFLIVHDIVEF 409

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             ++N+I    GRGS A S   +AL IT++D +   LLFERFL+P R   PD D+D    R
Sbjct: 410  CRRNDIL-CQGRGSAANSAVCFALGITNVDAVACGLLFERFLSPARDGYPDIDLDIESGR 468

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+YV  +YG    AQ+    + + ++A+RD+ RAL     Q D   K I       
Sbjct: 469  REEVIQYVYGRYGRGCAAQVANVITYRPRSAVRDMARALGFSPGQQDAWSKQIERWHGIG 528

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             S              + +     +L ++++L G  RH   H+ G+VI DRP+S++VP+ 
Sbjct: 529  GSDGP----------PVPEGMPPAVLALAEQLLGFPRHLGIHSGGMVICDRPVSEVVPVE 578

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDD 605
                 +  V Q++      AGL+KFD LGL  LT L   +D +A     +V+L  +   D
Sbjct: 579  WARMEERTVVQWDKDDCAAAGLVKFDLLGLGMLTALHTMIDLVAAHHGLRVELYELQPTD 638

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNN 663
             E Y +L    ++G+FQ+ES      L  ++P+   D++  V+L RPGPI   ++  Y  
Sbjct: 639  PEVYAMLQRADSVGVFQVESRAQMATLPRLKPERFYDLVVEVALIRPGPIQGGSVHPYIR 698

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            R+   E+    HPL+   L +T GV ++QEQ+MQ+A  ++G+S ++AD LRRAM  K+  
Sbjct: 699  RRRDLEEWHHDHPLLAGALDKTLGVPLFQEQLMQVAVDVAGFSAADADELRRAMGSKRST 758

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E+M++ + RF  G + NGI+  +A  IF  +  FA++GF +SH+ ++A + YQ+AW K +
Sbjct: 759  EKMERLRGRFYDGMAANGITGEVAEGIFAKMLAFANFGFPESHSISFASLVYQSAWFKRY 818

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-------RI 835
            YP  F AA +  +       +    DAR+  + +  P V     +  +  +        I
Sbjct: 819  YPAAFCAALLNSQPMGFYSPQSLVADARRHGVLVRGPDVCEGGAEATLEPDPRSEGGVAI 878

Query: 836  YYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
               L  ++ VG   A  I         +  L D   RV   +L     E+L  AGA  CF
Sbjct: 879  RLGLGEVRSVGIEKAEEIEAERVRGGRYRDLADLARRV---RLTAPQAEALATAGAFGCF 935

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            G  R   L +   +             + E++     G     +               +
Sbjct: 936  GIDRRSALWAAGVV----------AGVRPEHLPGAAVG-----LEAPALPGMTDVELTVS 980

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN--------------------- 993
            +    G     HPL   +P L ++G           R                       
Sbjct: 981  DVWATGVSPDSHPLQHLRPRLDELGAVPVARLDEVGRRAMTGTAHRMGRRGPQEVDALVE 1040

Query: 994  ------------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                         + +  +V  +Q+  T  G  + ++   +         
Sbjct: 1041 ALDPYDPDVRPPRVLVGGLVTHRQRPATAGG--VTFINLEDETGMLNVTC 1088


>gi|257463849|ref|ZP_05628236.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
 gi|317061383|ref|ZP_07925868.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
 gi|313687059|gb|EFS23894.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
          Length = 857

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 317/847 (37%), Positives = 505/847 (59%), Gaps = 29/847 (3%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            FVHL +H+ YSLL+G   + + + +  A +  AIAITD  N+F ALEF QKA   G++ 
Sbjct: 3   DFVHLHLHTEYSLLDGVGKIEDYMKRAKALRMKAIAITDHGNMFGALEFYQKAQKYGLKA 62

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIG ++ +            +        ++LL    EGYQ L+ L S  YL +      
Sbjct: 63  IIGVEVYLS-------EFPLEEKKGRNFHLILLAENYEGYQNLMRLSSLAYL-EGFYYKP 114

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ-VAEKRLLTFKKLFG-DRLYVNLQ 187
           RI    L++  ++G++ L+   +G I       + +   E  +  ++ +FG +  Y+ +Q
Sbjct: 115 RIDKELLRKY-SKGILALSACLNGEIASYILEGAEESKIEACIREYQDIFGKENFYLEVQ 173

Query: 188 RHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            H   ++      +  L    ++PLVATN++ ++++ ++   DV++ +   + +S + R 
Sbjct: 174 AHEEKEQRQVNEALYALGKKLQIPLVATNDTHYVNKGEHLLQDVILCIQTGSHISDEKRM 233

Query: 247 RVTPDHYL--KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
           R+                +     EA++N+VEIA+RC   + +H    P +   E     
Sbjct: 234 RIEMQDLYLKSYEEMYAMLGEQYAEAIQNSVEIAKRCQLWIPMHEFQFPDYTLPEG---I 290

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              E  L+     GL  R  +G        +   +R ++EL++I +M ++GYF++V DFI
Sbjct: 291 ASLEEYLKKLTYEGLAKRYPRGLD------EAIVERAEYELSIINKMGYAGYFVVVWDFI 344

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +A+K  IP+GPGRGS AGS+ AYAL IT +DPL + L+FERFLNP+R+SMPD DID CQ
Sbjct: 345 AFARKKKIPIGPGRGSAAGSLVAYALEITQLDPLEYHLIFERFLNPERISMPDIDIDICQ 404

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           +RR E+I YV  KYG ++VAQI TFG+L+A+AA+RDVGR +++  S++D+  K IP   +
Sbjct: 405 ERRQEIIDYVVQKYGQDKVAQISTFGTLKARAAIRDVGRVMEVELSKIDKAAKCIPMFAS 464

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                + + ++   +     D  +  ++  + ++E   RH STHAAG++I  + L++ VP
Sbjct: 465 ---LREVLEENIDLKTMYQQDVELKNVINTAIRIENKVRHISTHAAGVLITKKSLTESVP 521

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-LSLIPF 603
           +Y D ++ +  TQ+ MK +E+ GL+K DFLGL+TLT+LQ++ D++ +   K   L+ I  
Sbjct: 522 LYADSKNGIVSTQYQMKELEELGLLKIDFLGLRTLTILQRTQDYIEENTHKKIVLAEISL 581

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VY 661
            D + Y +L+   + G+FQ+ES G+R  L+ ++P+   DIIAL+SLYRPGP+ + +   +
Sbjct: 582 QDEKVYDMLSKGDSFGVFQMESRGLRSILKRLKPNSFGDIIALLSLYRPGPLGSGMVDDF 641

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             RK+GK+ IV  H  +  +L+ET GVI+YQEQVM+IA +++ YSL EAD+LRRAMGKK 
Sbjct: 642 IERKHGKKAIVYPHVSLQEVLEETYGVILYQEQVMKIANIMADYSLGEADLLRRAMGKKN 701

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            E M + + +FI  + K G  +  A  IF+L+ KFA YGFNKSH+AAYA+I+Y TA+ K+
Sbjct: 702 VEIMHENRSKFIERSIKKGYEREKAEEIFDLIDKFAGYGFNKSHSAAYALIAYWTAYFKS 761

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           HYP  F AA ++ E+ +++KI  +  DA+   ++I  P V  P   F V +++I ++L+A
Sbjct: 762 HYPKYFYAALLSSEISDIDKISFYFADAKAHGVEIQTPDVQFPSSRFVVKEDKILFALSA 821

Query: 842 IKGVGTT 848
           IK VGT 
Sbjct: 822 IKNVGTG 828


>gi|295395748|ref|ZP_06805937.1| DNA-directed DNA polymerase III alpha subunit [Brevibacterium
            mcbrellneri ATCC 49030]
 gi|294971409|gb|EFG47295.1| DNA-directed DNA polymerase III alpha subunit [Brevibacterium
            mcbrellneri ATCC 49030]
          Length = 1032

 Score =  574 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 266/1034 (25%), Positives = 423/1034 (40%), Gaps = 65/1034 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS++S L+GA     ++    A    A+A+TD N L+ A+ F+Q+A   G+  +
Sbjct: 2    YAELHAHSNFSFLDGASDPEELVHAAHAAGLSALALTDHNGLYGAVRFAQEAQRVGMPTV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +D+   +          P    +++L  + +GY++L   +S+ Y     K    
Sbjct: 62   FGAELSLDLAHKIP-----GQKDPQATHLLVLARSVDGYRQLSRAISQGY-EHGEKNRPI 115

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L  L  +  +   +LTG   GP+               L    +LF DR+ V L R  
Sbjct: 116  LHLEELAALDPD-WYILTGCRKGPLIPHL--GDPDGGVSALRGLTELFPDRVVVELTRFG 172

Query: 191  -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               D  R   +  LA    LP VATN   +     Y    V  A+     + +       
Sbjct: 173  HPTDDARIEHLTHLATRASLPTVATNAVHYAYRSGYRGAHVRAAIRSHASLDELAGWLPA 232

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                       +             VE A R               + +      ++ + 
Sbjct: 233  DATAYVRTPHDMRER-----FGPGPVETAHRIGQECAFELSAAQVGLPQAPVPPGRDADE 287

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR    AG   R                +++D EL  I  M F+GYFLIV D  ++   
Sbjct: 288  HLRELVYAGARRRYGD-----RSEHPRAWEQIDSELATITSMGFAGYFLIVEDIARFCHT 342

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I    GRGS A S   + L IT +D ++F LLF+RFL+P R   PD DID    RR+E
Sbjct: 343  NGIY-CQGRGSAANSAVCFVLGITAVDAVKFQLLFDRFLSPQRAGYPDIDIDIESGRREE 401

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+YV   YG  R AQ+    + + K+A+RD   A      Q D   K        P + 
Sbjct: 402  VIQYVYRTYGRTRAAQVANVITYRTKSAVRDAASAFGYSPGQQDAFAKTTHRGALSPDT- 460

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                                 +LE ++ L    RH   H+ G+++ DRP+  LVP+    
Sbjct: 461  ------------DEPPHVPAPVLEAARDLHDSPRHLGIHSGGMILTDRPIYDLVPIEPAA 508

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
                 V Q++        L+KFD LGL  L  L+   + + +             +   Y
Sbjct: 509  MEGRTVIQWDKDDSAAMNLVKFDLLGLGMLEALRHMNELVKKHTGHAVDRGNIPQEDGVY 568

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKNG 667
             +L     +G+FQ+ES      L  M+P    D++  ++L RPGPI   ++  Y  R+ G
Sbjct: 569  DMLCRADAVGVFQVESRAQLSTLPRMRPRNFYDLVVEIALIRPGPIQGESVHPYLRRRQG 628

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMD 726
             E +   HP +   L +T GV ++QEQ+MQIA  ++G+S ++AD LRRAM  ++    M 
Sbjct: 629  VEPVTYAHPALKNSLGKTLGVPLFQEQLMQIAIDVAGFSGADADELRRAMGARRSARTMA 688

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
              +ERF  G S  G+  T+A  IF  +A FADYGF +SHA ++A + Y++AW K  +   
Sbjct: 689  ALEERFYQGCSARGVEPTVAREIFGKIAAFADYGFPESHALSFANLVYESAWFKYRHHAA 748

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-------KVGDNRIYYSL 839
            F AA +  +       +    DAR+  + I    +N              VG   I   L
Sbjct: 749  FTAALLRSQPMGFYSPQSLIADARRHGVNIRAVDINLSHEHSDLEPDPQSVGGFAIRLGL 808

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             ++KG+    A  ++     +P+ S+ED   +     +    LE+L  AGA + FG  R 
Sbjct: 809  TSVKGISAEVATQVVTHRT-QPYTSIEDLACKT---GIPSDALEALATAGAYESFGVDRR 864

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            Q L    ++               + +        S  +      +         E    
Sbjct: 865  QALWIAGSL----------AGAGPDTLPGT-----SAVMEAPALPLMTEFDTTLAELFST 909

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G   +G+P +  +  L   G+    +++    G  I +A +V  +Q+ KT  G  + +  
Sbjct: 910  GMTVNGYPTEHLRAALNARGLASTRDAMNAQAGARITVAGIVTHRQRPKTTTG--VTFFN 967

Query: 1020 FSEPAKEYEANFFP 1033
              +          P
Sbjct: 968  IEDEFGMLNVVCSP 981


>gi|167585392|ref|ZP_02377780.1| error-prone DNA polymerase [Burkholderia ubonensis Bu]
          Length = 1067

 Score =  574 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 273/1057 (25%), Positives = 450/1057 (42%), Gaps = 68/1057 (6%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +    +  P +V L   S++S L GA     ++++        IAITD  +L  A     
Sbjct: 1    MAAEFKVLPDYVELFCRSNFSFLHGASHAEELVERAVELGYRGIAITDECSLAGAPRMHV 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A A G+  I+G   ++   D     + G  P P    +VLL    EGY  L EL+S   
Sbjct: 61   AAKAKGLPLIVGAYFEVTPDD----VSPGHDPGPGAFGLVLLAQNREGYGNLSELISWRR 116

Query: 121  LLDQGKQSVRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
            +    K + R+    L     E   L  +    +  +        + V + ++  F+  F
Sbjct: 117  MAS-PKGTYRLTARMLSRPPEEFAHLRGMPDCFAILVPAY--PVRADVLDAQVAWFRATF 173

Query: 179  GDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            G+R  + L Q  R  D  +  ++       E+ +VA  +            D + A+   
Sbjct: 174  GERARLGLVQLQRALDGAQREEIRMAGARREVRVVALGDVTMHRRSCKRLQDTMTAIRLG 233

Query: 238  TV-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
                          + +L+ R ++  +FS    A   T  I   C F L       P  I
Sbjct: 234  MPVSECGYALAPNAEQHLRWRRQIAQLFSPDEIA--QTCAILDACHFELDSLRYEYPDEI 291

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              +         + L  +  AG   R  QG        +   +++  EL++IAR+ +  +
Sbjct: 292  VPKG----HTPTSYLEQETRAGAAERYPQGV------PEKVEKQIRHELDLIARLSYEPF 341

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V D +++A+  NI    GRGS A SV  Y L IT+++P + ++LFERF++ +R   P
Sbjct: 342  FLTVYDIVKYARSQNIL-CQGRGSAANSVVCYCLGITEVNPEQSTMLFERFISAERGEPP 400

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF   RR+EVI+++  KYG +R A      + + +  LR+ G+AL +    +DR+ 
Sbjct: 401  DIDVDFEHQRREEVIQHIYRKYGKDRAALAAAVSTYRPRGVLRETGKALGVDPMLIDRVA 460

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            K           LQ  A            P +    +++ +L    RH S H+ G VI  
Sbjct: 461  KGHRWFDGSRDLLQQFAAV----GLDPDTPLIRAWADLAARLLNFPRHLSQHSGGFVISR 516

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--- 593
              L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ D         
Sbjct: 517  GKLTRLVPVENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWRGPP 576

Query: 594  ----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                    L  IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  V++
Sbjct: 577  EPDGKPFTLKHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRTYYDLVIEVAI 636

Query: 650  YRPGPID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             RPGPI    +  Y  R+ G EK+      + P L+ TQGV I+QEQVMQ+A + +G++ 
Sbjct: 637  VRPGPIQGGAVHPYLKRRQGLEKVSYPKEDLKPALERTQGVPIFQEQVMQVAMIAAGFTP 696

Query: 708  SEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             EAD LRRAM     K  ++K   + + G  +       A  IFE +  F DYGF +SHA
Sbjct: 697  GEADELRRAMAAWKRKGNLEKYHRKIVDGMRERDYPPEFAEQIFEQIKGFGDYGFPESHA 756

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A++A ++Y ++W+K H P  FLAA +  +        +  QDA++  +Q++P        
Sbjct: 757  ASFAKLAYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHGVQVLPIDATKSGW 816

Query: 827  DFKVG----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            +  +              +   L+ ++G+G   AR I  A A  PF++++    R    +
Sbjct: 817  EASLEALPGQPRPHGQPAVRLGLSLVRGLGEAAARRIEAARAAGPFENVDALARRA---Q 873

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            L RR LE+L  A AL      R   L             +        ++ A       D
Sbjct: 874  LERRDLEALAAANALATLAGHRRDALW------------QAVAAAPERDLLAAAP---ID 918

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            +  +      + +     +    G   + HP+ + +P LR+  +    E      G   R
Sbjct: 919  EPEMPALGAPSEADDVLADYHTTGLTLNRHPVALLRPALRERRLLSAAELRDRPDGRLAR 978

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +V ++Q   T KG  + ++T  +          P
Sbjct: 979  ACGLVTARQMPGTAKG--VMFMTLEDETGCVNLIVRP 1013


>gi|289208277|ref|YP_003460343.1| DNA polymerase III subunit alpha [Thioalkalivibrio sp. K90mix]
 gi|288943908|gb|ADC71607.1| DNA polymerase III, alpha subunit [Thioalkalivibrio sp. K90mix]
          Length = 1044

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 262/1050 (24%), Positives = 445/1050 (42%), Gaps = 77/1050 (7%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +     + P +  L   S++S L GA     ++++  A    A+A+TD  +L   +    
Sbjct: 1    MDPTTPEPPEYAELMAVSNFSFLRGASHPEELVERARALGYRALALTDIASLAGVVRAHA 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A   G+  I+G    +                   P++ LLV  A GY  L  L+++  
Sbjct: 61   AAKECGLHLILGATFQLADG----------------PALTLLVRNAAGYAALCRLITQAR 104

Query: 121  --LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
                       R  L  L      G  +L      P + A        A + L  +    
Sbjct: 105  GAADKGHYHLTRADLDVLPAEARAGWHVLLRIEPEPAEPALA-----EAVRWLAGWAT-- 157

Query: 179  GDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
              + ++ + Q     D    ++  QLA    LP+VA  +    S       DVL A+   
Sbjct: 158  PGQAHLAVSQLRTPEDATLATRARQLAEATRLPIVACGDVHMHSRGRRALQDVLTALRQR 217

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            T V++    R           + ++        L  +V IAR C F L       P    
Sbjct: 218  TTVAEAAPARFPNGERCLRPRDDLATL-YPAPWLAASVRIARDCDFSLDAVTYRYPTDPL 276

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                         LR + + G   R   G            ++++ EL +IA++ +  YF
Sbjct: 277  PR----DTSPAAYLREETLKGARGRWPDG------IPPKVTEQIERELGIIAQLGYEPYF 326

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V D +++A+   I    GRGS A S   YAL IT +DP R S+LFERF++ +R   PD
Sbjct: 327  LTVYDIVRFARGRGIL-CQGRGSAANSAVCYALGITAVDPSRSSMLFERFISAERGEPPD 385

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR-LC 476
             D+DF  +RR+EVI+Y+  +YG ER A   T    + ++ALRDVGRAL +  +++D    
Sbjct: 386  IDVDFEHERREEVIQYIYQRYGRERAALACTVIRYRRRSALRDVGRALGISRARLDALTA 445

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ--KLEGLYRHASTHAAGIVI 534
             L   D   P          R RE  L           +   +L G  RH S H  G VI
Sbjct: 446  NLAWWDDGIPA--------ERLREVGLDPDGALARQWQALTAELLGFPRHLSQHTGGFVI 497

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
             +  L +LVP+      +  V Q++   ++  GL+K D L L  L+ ++++L+ +AQ RG
Sbjct: 498  AEGRLDELVPIENAAMPERSVIQWDKDDLDAVGLLKIDVLALGMLSCVRRALELMAQHRG 557

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ +P +D   Y +L    TLGIFQ+ES      L  ++P    D++  +++ RPG
Sbjct: 558  RDWGLADVPAEDPAVYRMLQKADTLGIFQIESRAQMSMLPRLKPANFYDLVIEIAIVRPG 617

Query: 654  PID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PI    +  Y  R+   E++   +  +  +L  T GV I+QEQV+++A + +G+S  EAD
Sbjct: 618  PIQGEMVHPYLKRRAHPERVSYPNAEVKRVLGRTLGVPIFQEQVIELAMVAAGFSAGEAD 677

Query: 712  VLRRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRRA+G   +     + +ER + G  + G  +  A  +++ +  F +YGF +SH+A++A
Sbjct: 678  GLRRAIGAWRRTGQLARYRERLMDGMRQRGYPEKFAEQLYKQILGFGEYGFPESHSASFA 737

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +I++ ++W+K H P  F  A +  +        +   DAR+  +++ P  V     D  V
Sbjct: 738  LITWVSSWLKCHEPAIFACALLNSQPMGFYAPAQIVADARRHGVEVRPVDVRCSDWDCTV 797

Query: 831  GD------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
                      +   L  + G+    A  ++ A A++PF  + D  +R     L R     
Sbjct: 798  EPVAGSDALALRLGLNRVGGLAQAVAERVVAARAERPFADVPDLVARA---ALTRAQANR 854

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL-EKF 943
            L  A AL     +R Q   + + +++               +FA        +  +    
Sbjct: 855  LARADALKGLAGNRHQARWATEAVEE------------PLPLFADAPAETVREADVTPLL 902

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
               ++      +    G     HPL + +P L +  +      +        R A +V++
Sbjct: 903  PGPDAVDDLVQDYATQGLSLGPHPLALMRPFLEQRRLPTAARLLERPGHPGARYAGLVIT 962

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +Q+  +  G+   ++T  + +       +P
Sbjct: 963  RQRPGSAHGT--VFLTLEDESGTLNLIVWP 990


>gi|209547187|ref|YP_002279105.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv.
            trifolii WSM2304]
 gi|209538431|gb|ACI58365.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
            trifolii WSM2304]
          Length = 1087

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 272/1043 (26%), Positives = 455/1043 (43%), Gaps = 80/1043 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  LQV + +S L GA S   +          A+ I D N+L   +   + + A G++ 
Sbjct: 2    RYAELQVTTHFSFLRGASSAEELFATAKLMGIEALGIVDRNSLAGIVRALEASRATGLRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC+LD+                    S+++  +    Y RL  L++        K   
Sbjct: 62   VVGCRLDLADGM----------------SMLVYPTDRAAYSRLTRLLTLGKGRGG-KAKC 104

Query: 130  RICLSWLQEIGTEGLI-MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
             + L  +     EGLI +L    +            +    +L    ++FGDR YV+L  
Sbjct: 105  ILQLDDVALY-AEGLIGVLVPDMA-----------DETCAVQLRKMAEIFGDRAYVSLCL 152

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRP 246
            R R  D+ R  ++  LA  H +  V TN+ LF      +  DV+  +   T +       
Sbjct: 153  RRRPNDQLRLHELSNLAVKHRVKTVITNDVLFHEPGRRQLQDVVTCIRTGTTIDDVGFER 212

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                D +LK   EM  +F   PEAL  T++I  RC F L+      P          Q+ 
Sbjct: 213  ERHADRFLKPPEEMARLFPRYPEALARTMDIVERCRFSLEELVYQYPEEALIPGMTAQES 272

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+        G+  R  +G  A         + +  EL +I  MK++ YFL V   +++
Sbjct: 273  LEHY----TWEGVTTRYPEGLPAH------VEKTIRHELALIETMKYAPYFLTVFSIVRY 322

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I    GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +R
Sbjct: 323  ARAQGIL-CQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEHER 381

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+++   YGH++ A   T    +AK A+RDVG+AL +P   ++ L   I +     
Sbjct: 382  REEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALGLPEDLINSLSSGIWSW---- 437

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             S     +  R       D  +   L ++Q+L G  RH   H  G V+    L  LVP+ 
Sbjct: 438  -SETVGENQVRALGLNPEDRRLALTLRLAQQLMGAPRHLGQHPGGFVLTHDRLDHLVPIE 496

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDD 605
                 D  V +++   +E   ++K D L L  LT + K+   + +   +   L+ IP +D
Sbjct: 497  PAAMVDRQVIEWDKDDVEALKMMKVDVLALGMLTCMAKAFALIGEHKHQDLYLATIPQED 556

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
              TY ++    TLG FQ+ES      L  M+P    D++  V++ RPGPI   +V+    
Sbjct: 557  PATYAMIRKADTLGTFQIESRAQMSMLPRMKPKTFYDLVIQVAIVRPGPIQGDMVHPYLR 616

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R+ GKEK+    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M      
Sbjct: 617  RREGKEKVEYPTPELEAVLHKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATFKFT 676

Query: 724  -EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              + + K++ +SG  K+G S   A   F  L  F  YGF +SHAA++A+I+Y + ++K H
Sbjct: 677  GGVSRFKDKLVSGMIKSGYSPEFAEKTFGQLEGFGSYGFPESHAASFALIAYASNYVKCH 736

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------NRIY 836
            +P  F AA +  +        +   DAR+ ++++ P  +N    D  + +      + + 
Sbjct: 737  FPDVFCAALLNSQPMGFYAPAQIVSDARKHDVEVCPICINRSRWDCTLEEVEGTGRHAVR 796

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFG 895
              +  ++G+ T  A  I+ A AD+PF S++D   R     +    L  L  A A      
Sbjct: 797  LGMRLVRGLATADAARIVAARADEPFASVDDMWRR---SGVPVASLVELAEADAFLPSLR 853

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----AHEKGTFSDKITLEKFSVENSSV 950
              R   L ++  ++                +F        +     +    +        
Sbjct: 854  LERRDALWAIKALRDE-----------PLPLFTSAAEREARAIAEQQEPEVELRQMTDGH 902

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                +   +G     HPL   +  L K  I    +++    G  +  A +V+ +Q+  + 
Sbjct: 903  NVVEDYSHIGLTLREHPLRFLRADLTKRQIVTCAKAMTARDGQWLMAAGLVLVRQRPGSA 962

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
            KG  + ++T  +         +P
Sbjct: 963  KG--VMFITIEDETGIANIVVWP 983


>gi|315499387|ref|YP_004088190.1| DNA polymerase iii, alpha subunit [Asticcacaulis excentricus CB 48]
 gi|315417399|gb|ADU14039.1| DNA polymerase III, alpha subunit [Asticcacaulis excentricus CB 48]
          Length = 1075

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 259/1042 (24%), Positives = 454/1042 (43%), Gaps = 76/1042 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
             P +V LQ  S +S L+G  S + +  +  A    A+AI D N L   +     A A G+
Sbjct: 2    PPPYVELQCASYFSFLQGCSSPDELFVRAQALGLEALAIADRNTLAGMVRAHVAAKATGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+GC LD+                    S+++  +    Y RL  L++        K 
Sbjct: 62   RLIVGCHLDLTDG----------------ASLLVYPTDRTAYARLSRLLTVGKARGG-KG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +    +++             +G I       + +V  +RL  FK +F +R ++ L 
Sbjct: 105  RCDLTWQDVEDFN-----------AGLIGIFIPEEADEVCAQRLRRFKTIFAERAHMALT 153

Query: 188  -RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV-VSQKDR 245
             R R  D  R   +  LA    +P V TN+ L+   E  + HDV+  + H+    +  D 
Sbjct: 154  LRRRQGDHLRLHDLSNLAARVRVPTVITNDVLYHVHERDQLHDVVTCIRHNCTIDTMGDL 213

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 D YLK   EM  +F     AL  + EIA +C F L       P            
Sbjct: 214  RHCYADRYLKTPEEMYRLFPGYEGALRRSAEIAEQCRFSLDELKYQYPEEKLLPG----L 269

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + L+     G + R  +G        Q     L  EL +I ++ ++ YFL V   + 
Sbjct: 270  SAIDALKKLTWEGAKRRYPEGV------PQKVIDLLRHELTLIEKLNYAPYFLTVNAIVN 323

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I    GRGS A S   + L IT +DP R  LLFERF++ +R   PD D+DF   
Sbjct: 324  FARSQDIL-CQGRGSAANSCVCFVLGITSVDPDRNDLLFERFISEERGEPPDIDVDFEHQ 382

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV+++V   YG    A        + + A+R V + +  P   +  + K + +    
Sbjct: 383  RREEVLQWVYETYGRSHAALTAVVTRFRTRGAIRAVLKVMGYPEDTIKLISKQVTHWHRG 442

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             ++L     ++      L D  +   +++   L  + RH S H  G V+    L +LVP+
Sbjct: 443  GMTL----AEAEGLGLNLNDRRLKLAIDLHLLLMNVPRHLSQHPGGFVLTHDRLDELVPI 498

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
                     V +++   I+    +K D LGL  ++ +++SLD LA+ +G+++DL+ IP +
Sbjct: 499  EPARMKARQVIEWDKDDIDVLAFMKVDCLGLGMMSCMKRSLDLLAEVKGIELDLATIPAE 558

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662
            D  TY ++    T+G+FQ+ES   +  L   +P    D++  V++ RPGPI   +V+   
Sbjct: 559  DPRTYAMIRKADTVGVFQIESRAQQAMLPRTKPRTFYDLVVQVAIVRPGPIQGGMVHPYL 618

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R+ G E++      ++ +L +T GV ++QEQ M +    +G+S   AD++RRAM     
Sbjct: 619  RRREGTEEVTYPSKELEAILSKTLGVPLFQEQAMSVVIKAAGFSPGRADMVRRAMATFKH 678

Query: 723  E-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               + K  +  + G  KNG ++  A  IF  L  F  YGF +SHA ++A+I+Y ++WMK 
Sbjct: 679  TGGVSKFHDEIVQGMLKNGYTQDYAEQIFSQLEGFGSYGFPESHAYSFALIAYASSWMKC 738

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------RI 835
            H+P  F AA +  +        +  ++A++  +++ P  VN    D  + +        +
Sbjct: 739  HHPDVFCAALLNSQPMGFYAPAQLVRNAQEHGVEVRPVCVNASHWDCTLEETNRPGRYAV 798

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CF 894
                  +KG+ +     ++    D PF S+ D   R  +     R    L  A A     
Sbjct: 799  RLGFRLVKGLKSADIAKLILHRGDYPFTSISDLWKRARTPVATLRQ---LAKADAFSPAL 855

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK----FSVENSSV 950
            G +R   L ++  ++                +F H +        + +         +  
Sbjct: 856  GLNRRDALFAIRALRDD-----------PLPLFDHLEAIAGGTHEMPEPQVSLKPMTAGA 904

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                +   LG     HP+   +  LR+ G+    +++A+  G N+ +A MV+ +Q+  + 
Sbjct: 905  VVVEDYNHLGLTLGTHPVSFLREELRQRGLMPCADAMASKDGRNVSVAGMVLVRQKPGSA 964

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
             G  + ++T  +  ++     +
Sbjct: 965  NG--VMFMTLEDETRDANVVVW 984


>gi|323488459|ref|ZP_08093706.1| DNA polymerase III DnaE [Planococcus donghaensis MPA1U2]
 gi|323397966|gb|EGA90765.1| DNA polymerase III DnaE [Planococcus donghaensis MPA1U2]
          Length = 1020

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 352/1022 (34%), Positives = 568/1022 (55%), Gaps = 49/1022 (4%)

Query: 15   QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN-LFSALEFSQKACAAGIQPIIGC 73
             + +S  LL+  + L+ +   +      ++AI   N  L+  L F +    AGI  ++G 
Sbjct: 7    HISTSADLLKSTVRLDELFPFLKEQGASSVAI--VNTKLYGMLPFWEACRRAGIHGVVGL 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
               I+ ++                S+VL   + +GY  L+++ S +   D+      I  
Sbjct: 65   STFIEYEE-------------QHYSVVLYAQSNKGYDNLLKISSALATRDKE----AIPE 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
             WL+    EGLI +    +         + S      +   K LFG   + +++R  G  
Sbjct: 108  QWLKAY-KEGLICVIPNKA----EWLLTDRS----LVIGYIKSLFGQAAFGSIERPGGVV 158

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH- 252
               ES  ++L    E+P++AT+   ++ ++D  A++V  A+     ++  +R      + 
Sbjct: 159  SAYESDFIELCAQLEIPIMATHEIRYMHQQDAFAYEVASAIGQGLKMNDPERQTPEHTNA 218

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            Y+ ++ E    F+D  E ++ T  + + C   + ++  +LP +   E  D      + + 
Sbjct: 219  YVPSQQEFFEWFADRNEWVQQTANMLKSCRVTIPMNQQLLPVYPLSEQVDK----ASYIA 274

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                 GL+ R+ +         ++Y++RL++EL+VIA+M F  YFLIVADF+++AK  +I
Sbjct: 275  QLCKTGLKERVPRF-------PENYQERLNYELSVIAKMGFIDYFLIVADFMKYAKDQDI 327

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
              GPGRGS A S+ AY+L IT++DP+   LLFERFLNP+R+++PD DIDF   RR EV+ 
Sbjct: 328  MTGPGRGSSASSLVAYSLKITNVDPIEHGLLFERFLNPERVTLPDIDIDFADHRRHEVVD 387

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            YV  KYG  R AQIITFG+L AKA  RD  R       +++ + KLI N P   +   A+
Sbjct: 388  YVAKKYGAVRTAQIITFGTLSAKAVARDTARVFGFEAEELEAISKLISNRPGTTL-RSAL 446

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
             + S+F +  +         + + KLEGL RHASTHAAG+++   PL   VP+ +     
Sbjct: 447  KESSKFNDWIIEREERKSWFKTALKLEGLPRHASTHAAGVILSPTPLVNHVPIEKG-HEG 505

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHL 611
            + +TQ+ M+ +E  GL+K DFLGL+ LT+L++  + +      K++ S IP DD +T+ L
Sbjct: 506  IYLTQWPMQELEAIGLLKMDFLGLRNLTILEQIRNLVYWGTKQKINYSDIPLDDEKTFKL 565

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
            L +  T G+FQLES GMRQAL+ +QP    DI+A+ +LYRPGP++ I +Y  RK+G+E +
Sbjct: 566  LASGDTTGVFQLESDGMRQALQQIQPTAFGDIVAVNALYRPGPMEFIPLYARRKHGQETV 625

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
              IHP+++P+L ET GVI+YQEQ+M IA  ++G+SL EAD+LRRA+ KK +E +D+++E 
Sbjct: 626  KYIHPILEPILSETYGVIVYQEQIMHIAAKMAGFSLGEADLLRRAVSKKKREILDEEREH 685

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            F+ GA+  G +K+ A  +++L+ +FADYGF KSHA AY++ISYQ ++MK HYPV F  + 
Sbjct: 686  FVLGATSKGFTKSEAAEVYDLIVRFADYGFPKSHAVAYSMISYQLSYMKAHYPVYFYTSL 745

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
            +T    N EK K+  Q+ ++  I I+PPSV      F V D +I + L A+KGV  TT +
Sbjct: 746  LTNSAGNAEKTKQLLQEIKEKKIPILPPSVQKSRHTFSVEDGQIRFGLNAVKGVPGTTIK 805

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
             ++ A  + PF  L +   R+ +   NR+  E L+ AGALD FGY R  +L SLD+  K+
Sbjct: 806  ALLAAREEGPFTGLFNIAERISALHFNRKSFEPLIKAGALDEFGYDRGVILASLDSAIKH 865

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
            A+ V+ N       +F     +F  K    K S    +++ E E+ VLGFY S HP++  
Sbjct: 866  AELVKPNDEPG---LFDDMGASFM-KPKYTKASEMPENLKLEFEKDVLGFYLSKHPIER- 920

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +   R+      +   +     ++++  ++   ++ +T+KG  + ++T  +         
Sbjct: 921  EKEHRQKSYDALKSLKSKRDRESVKVLGVIEEIKRIRTKKGDAMAFLTLMDETGPASVTL 980

Query: 1032 FP 1033
            FP
Sbjct: 981  FP 982


>gi|296138661|ref|YP_003645904.1| DNA polymerase III subunit alpha [Tsukamurella paurometabola DSM
            20162]
 gi|296026795|gb|ADG77565.1| DNA polymerase III, alpha subunit [Tsukamurella paurometabola DSM
            20162]
          Length = 1093

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 282/1032 (27%), Positives = 474/1032 (45%), Gaps = 60/1032 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  H+++S L+GA     ++++  A    A+A+TD N  +  + F++ A   G+  +
Sbjct: 58   YAELHAHTAFSFLDGAAQPEEMVEQAHALGLTALAVTDHNGFYGVVRFAEAALGLGVPTV 117

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +     L+   +  T  P    +++L    EGY+RL   ++  ++    K  +R
Sbjct: 118  FGAELSL-----LRDAERTGTADPDGEHLLVLARGQEGYRRLSRAMAEAHMEAGEKGKLR 172

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                 L E       +LTG   G + R         A   L      FG DR+ + L  H
Sbjct: 173  FHPDRLAEWSEGHWHILTGCRKGAVRRGLDAAGPDGAAGALAHLLDRFGPDRVSMELTVH 232

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                D  R   +  +A    +  VAT  + F   +       L A+     + + D    
Sbjct: 233  GVPEDDERNHLLAGVAARMGVGTVATTGAHFARPDQRRLAATLAAIRARRSLDELDGWLP 292

Query: 249  TPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 +L++  EM  +  + P A+   VE+A  C+F L++ AP LP F           E
Sbjct: 293  AAGGAHLRSGDEMALLLPEHPGAIAGAVELAAECAFSLRLIAPNLPPFDVPAG----HTE 348

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     G   R          + + YRQ ++ ELNVI  + F GYFLIV   + + 
Sbjct: 349  ATWLRELTRRGALDRYG----PPESNPKAYRQ-IEHELNVIETLTFPGYFLIVHSIVSFC 403

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++++I    GRGS A S   +AL IT +DP+R  LLFERFL P+R   PD D+D   DRR
Sbjct: 404  RESDIL-CQGRGSAANSAVCFALGITAVDPVRNGLLFERFLAPERDGPPDIDVDIESDRR 462

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +E I++V   YG    AQ+    + + ++A+RD  RAL     Q D             +
Sbjct: 463  EEAIQFVYRTYGRAYAAQVANVITYRGRSAVRDTARALGYSQGQQDAWS--------KQI 514

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            S     +D       + D   +R+++++ ++  L RH   H+ G+VI DRP++ + P   
Sbjct: 515  SSYGWRNDP------VPDGVPERVIDLATQIADLPRHLGIHSGGMVICDRPIADVCPTEW 568

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                D  V Q++      AGL+KFD LGL  L+ L  + D L +   ++VD + +   D 
Sbjct: 569  ARMQDRSVLQWDKDDCAAAGLVKFDLLGLGMLSALHYAQDLLKEHKGIEVDFAQLDLTDD 628

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664
              Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y  R
Sbjct: 629  TVYAMLRRADSVGVFQVESRAQMATLPRLKPRTFYDLVVEVALIRPGPIQGGSVHPYIRR 688

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723
            +NG+E+    HP +   L+ T GV ++QEQ+MQ+A  ++ ++ +EAD LRRAM  K+  E
Sbjct: 689  RNGQEEPRVEHPSMWKTLERTLGVPLFQEQLMQLAVDVADFTPAEADQLRRAMGSKRSTE 748

Query: 724  EMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            +M++ +ERF  GA + +GI   +A  IFE LA FA++GF +SH+ ++A + + ++W K +
Sbjct: 749  KMEQLRERFYRGAKQLHGIEGELADRIFEKLAAFANFGFPESHSQSFASLVFYSSWFKCY 808

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT--PCVDFKVGDNRIYYSLA 840
            +P  F AA +  +       +    DAR+  + +  P +N   P  + +     +   LA
Sbjct: 809  HPAAFCAALLRAQPMGFYSPQSLVADARRHGVTVHGPDLNISLPWANLENAGMEVRLGLA 868

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            AI+ +G   A  I+    A   +  L D  SRV+   L     E+L  +GALDCFG  R 
Sbjct: 869  AIRTIGDELAERIVAEREAGGIYAGLTDLTSRVE---LTVAQAEALATSGALDCFGRDRR 925

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            Q L         A    + R ++   +                    + +     +    
Sbjct: 926  QALWE-------AGAAARERPDR---LPGTATAGAP-----PTLPGMSETELAAADVWAT 970

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
                  +P +  +P L ++G+   ++ ++   G+ + +   V  +Q+  T  G  + ++ 
Sbjct: 971  SVTVGKYPTEFLRPKLDELGVIPADQLLSLPDGDRVLVGGAVTHRQRPATAGG--VTFIN 1028

Query: 1020 FSEPAKEYEANF 1031
              +         
Sbjct: 1029 LEDETGMVNVVC 1040


>gi|293376148|ref|ZP_06622394.1| putative DNA polymerase III DnaE [Turicibacter sanguinis PC909]
 gi|292645221|gb|EFF63285.1| putative DNA polymerase III DnaE [Turicibacter sanguinis PC909]
          Length = 1010

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 333/1024 (32%), Positives = 561/1024 (54%), Gaps = 56/1024 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFVHLQV S+YSLL  ++ +  ++D    +Q   +A+ +   + SA++F        ++P
Sbjct: 2    SFVHLQVRSAYSLLSSSIKIKELVDLALENQMSCLALVEEGTMHSAIKFYNACRRVNVKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG  +++     +                V+L     GYQ L+++ S +      KQ  
Sbjct: 62   LIGMSVNVQGDSFIDEW-------------VILARNQCGYQGLLKIASFI-----AKQEG 103

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             +    +     + L+++T G  G +         +   +   ++ K     LY+ L R 
Sbjct: 104  VVLYEQVLPFVQD-LVVITSGEHGMLCSGIEEYKEERLLQYYESYLKSIP-HLYIGLMRV 161

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                      ++  A     P+VA N+  +L +ED +   +L A+  +  V  ++ P V 
Sbjct: 162  NQRTYELSKHLISFASNVNRPIVALNDVRYLKKEDAKTLTLLQAIKQNQSV--EELPLVD 219

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + Y K+  +M  +F+D+P AL  T +IA  C   + +H  +LP++   E        ++
Sbjct: 220  YERYFKSECQMKELFADVPNALMQTEQIANDCEVEIPLHQSLLPKYQTPEGV----SSDS 275

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L      GLE R             +Y  RL +EL+VI +M FS YFLIV DF+++AK 
Sbjct: 276  YLEALCFKGLEKRYGHL---------EYANRLKYELSVIHKMGFSDYFLIVWDFVRYAKS 326

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            ++I VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R++MPD DIDF  +RRDE
Sbjct: 327  HDIYVGPGRGSAAGSLVAYVLGITNVDPIKYELLFERFLNPERITMPDIDIDFQDNRRDE 386

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+YVQNKYG   V QI TFG+ Q+++A RD+ R  Q+  + ++++   I +        
Sbjct: 387  VIQYVQNKYGSHCVVQIATFGTFQSRSAWRDLARVHQVETTLINKVASFIYSGS---TLK 443

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +        R+     P ++ + + ++K+EGL RH S HAAG++I D  L+    +  + 
Sbjct: 444  EIYEQTKGLRDFFSTYPKLEAIYKEAEKIEGLPRHTSIHAAGVIISDHDLTDYTAI-MEG 502

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
             + + V+Q+  + +E  GL+K DFLGLK L +LQ+    +      + D++ IP+DD +T
Sbjct: 503  PTGIYVSQYEAEDLEMIGLLKMDFLGLKNLNMLQQITTLIKSSVAPEFDINKIPYDDLKT 562

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            Y +++   T G+FQLES GMRQ L  ++P+C+EDIIA  +L+RPGP++ I ++  RK+ +
Sbjct: 563  YEMISQGQTTGVFQLESEGMRQVLRAVRPNCLEDIIACNALFRPGPMEGIPLFAARKHHE 622

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            + I   HP +  +L +T G+I+YQEQ+MQIA ++SGYSL EADVLRRA+ KK KE ++++
Sbjct: 623  QPIEYYHPSLQYILSKTYGIIVYQEQIMQIANVVSGYSLGEADVLRRAVSKKKKEILERE 682

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            ++ F+  A + G  + IA  ++EL+ KFA+YGFN+SHA AY++I+YQ A++K HYP  F+
Sbjct: 683  QKTFVEKAIERGYHQEIATQLYELILKFANYGFNRSHAVAYSMIAYQMAYLKRHYPSYFM 742

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
              +++  + +     ++ ++A+Q +I ++PPS+N+  + +++ +  I +SL  IK +G  
Sbjct: 743  TVALSNVIGSESNTAQYVKEAKQLDILVLPPSINSSGLMYQIENENIRFSLLPIKHIGMN 802

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             AR I+       + S  DF SR     LN+R  E L+  GA+D FGY+R  L  +L  I
Sbjct: 803  LARQIVAERERGLYKSFYDFVSRT-RSFLNQRAYEGLIDVGAMDEFGYNRTTLHHNLTAI 861

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              ++++           +F  +      K TL      +S+ + + E+ +LGFY + HP+
Sbjct: 862  LDFSKYD--------GGLFETDFEIMMMKETL------SSAEKMKREKELLGFYLNSHPI 907

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             + +   ++ G     + +     + I     V   ++ + +KG  + ++  S+      
Sbjct: 908  HLMRDQAKEKGWYFPSDLIHL-NVSTITCVGFVEKFREIRDKKGKLMAFMDISDENGTVS 966

Query: 1029 ANFF 1032
               F
Sbjct: 967  VTIF 970


>gi|222148691|ref|YP_002549648.1| DNA polymerase III alpha chain [Agrobacterium vitis S4]
 gi|254777923|sp|B9JWL2|DNAE2_AGRVS RecName: Full=Error-prone DNA polymerase
 gi|221735677|gb|ACM36640.1| DNA polymerase III alpha chain [Agrobacterium vitis S4]
          Length = 1097

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 263/1042 (25%), Positives = 450/1042 (43%), Gaps = 78/1042 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  LQV + +S L GA S   + +   +    AI + D N+L   +   + + A G++ 
Sbjct: 2    RYAELQVTTHFSFLRGASSAIELFETAKSLGIDAIGVVDRNSLAGIVRALEASRATGVRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC+LD+                    SI++  +    Y RL  L++        K + 
Sbjct: 62   VVGCRLDLQDGM----------------SILVYPTDRTAYSRLARLITLGKGRGG-KDNC 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
             + L  + + G   L +L    +                 +L    ++FGD  Y++L  R
Sbjct: 105  ILMLDDIAQYGEGLLGILVPDLA-----------DDTCAVQLRKMAEVFGDLAYLSLCLR 153

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPR 247
             R  D+ R  ++  +A   ++  V TN+ LF      +  D++  + ++T +        
Sbjct: 154  RRPNDQLRLHELSNMATRFKVKTVVTNDVLFHEPGRRQLQDIVTCIRNNTTIDTVGFERE 213

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               D YLK   EM  +F    +AL  T+EI  RC F L+      P          +K  
Sbjct: 214  RHADRYLKPPEEMERLFPRYRQALRRTMEIVDRCKFSLEELTYQYPEEAI----VPRKTA 269

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L +     +  R  QG            Q +  EL++I +MK++ YFL V   +++A
Sbjct: 270  QESLEHYVWQCVPDRYPQGL------PPKTLQIIRHELDLIHKMKYAPYFLTVFSIVRFA 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I    GRGS A S   Y L +T IDP   +LLFERF++ +R   PD D+DF  +RR
Sbjct: 324  RAKGIL-CQGRGSAANSAVCYILGVTSIDPETNNLLFERFVSQERDEPPDIDVDFEHERR 382

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+++   YG E+ A   T    +AK A+RDVG+AL +P   +  L   + +      
Sbjct: 383  EEVIQWIYKTYGKEKAALCATVNRYRAKGAIRDVGKALGLPEDLIKALSSGMWSW----- 437

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            S +    + R       D  +   L+++Q+L G  RH   H  G V+    L  LVP+  
Sbjct: 438  SQETSDRNVRELNLNPDDRRLTLTLQLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEP 497

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606
                D  + +++   +E    +K D L L  LT + K    + +      DL+ I  +D 
Sbjct: 498  STMEDRQIIEWDKDDVEALKFMKVDVLALGMLTCMSKVFALIREHKGDDLDLAKIRQEDK 557

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 558  ATYEMICKADTLGTFQIESRAQMAMLPRLKPKTFYDLVVQVAIVRPGPIQGDMVHPYLRR 617

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE- 723
            +  KE +    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M       
Sbjct: 618  REKKEDVDYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFTG 677

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             + + KE+ +SG  KNG +   A   F  L  F  YGF +SHAA++A+I+Y + ++K H+
Sbjct: 678  GVSRFKEKLVSGMVKNGYTPEFAEKTFSRLEGFGSYGFPESHAASFALIAYASNYVKCHF 737

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRIYY 837
            P  F AA +  +        +   DAR   +++ P  VN    D  +        + +  
Sbjct: 738  PDVFCAALLNSQPMGFYAPAQIVGDARAHGVEVRPVCVNRSRWDCTLERIGTTQQHAVRL 797

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CFGY 896
             +  +KG+       I+ A  + PFDS++D   R     +    L  L  A A       
Sbjct: 798  GMRMVKGLVVADVARIVAARMNGPFDSVDDMWRR---SGVPAASLVELAHADAFQPSLKL 854

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV-----ENSSVR 951
            +R  +L ++  ++                +FA         I  +               
Sbjct: 855  ARRDVLWAIKALRDE-----------PLPLFAAAAEREMKTIAEQNEPEVELRQMTKGHN 903

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +   +G     HP+   +  L K  I   EE++    G  +  A +V+ +Q+  + K
Sbjct: 904  VVEDYGHIGLTLRDHPIAFLRTDLAKRNIVTCEEAMTARDGRWVITAGLVLVRQKPGSAK 963

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G  + ++T  +         +P
Sbjct: 964  G--VMFITIEDETGPANIVVWP 983


>gi|255039130|ref|YP_003089751.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053]
 gi|254951886|gb|ACT96586.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053]
          Length = 1074

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 262/1036 (25%), Positives = 455/1036 (43%), Gaps = 74/1036 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV ++++ L G      ++ +       AIAITD N L   +     A     + I
Sbjct: 3    YTELQVTTNFTFLRGGSHPEELVGQAIELGYKAIAITDRNTLAGVVRAHAAAKGKDFRII 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
              C+LD+                   PS++   +    Y  L  L++   L  + K    
Sbjct: 63   PACRLDLLDG----------------PSLLAYPTHQAAYSHLSALLTEGNLRTE-KGKCD 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ---VAEKRLLTFKKLFGDRLYVNLQ 187
            +  + +     EG+          +  A    S       E+ L  +++  G  LY+   
Sbjct: 106  LYKADVYRY-AEGI------RFIAVPPAALNESFDFDPSFEQNLREYRRALGKSLYLGAI 158

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDR 245
            R ++G D  +  ++ QL+   ++PLVATN+  + + +  E  DVL  +     +     R
Sbjct: 159  RSYQGDDMKKLYRLDQLSQHLDIPLVATNDVHYHNFQRRELQDVLTCIREKCTIYNAGFR 218

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + YLK  +EM  +F   PEA+E T EIA  C F L     + P  +  E     +
Sbjct: 219  LHENAERYLKPAAEMQRLFMKFPEAIERTQEIADACQFSLSSLKYVYPEELTTEG----R 274

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                EL +    G + R  +G         D   ++  E   +  M ++ YFL V D ++
Sbjct: 275  TPMEELIHLTWLGAKKRFPKG------IRPDIHAKILHEFKFVEEMNYAAYFLTVYDIVR 328

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A +  I    GRGS A SV  Y L IT +DP+   LLFERF++  R   PD D+DF  +
Sbjct: 329  FANEQKIL-CQGRGSAANSVICYCLGITSVDPIEIDLLFERFISSSRNEPPDIDVDFEHE 387

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EV++Y+ NKYG +R   + T   +  K A+RDV +A+ M    + RL   +      
Sbjct: 388  RREEVMQYIYNKYGRDRAGIVATVTQVHQKGAVRDVAKAMGMSMDAISRLSSSLWEFTDE 447

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                + I +          DP + ++L+++++  G  R    H  G VI    LS L P+
Sbjct: 448  WFDGKLITEH----GFNPNDPHLIKILDLTRQYMGFPRQLGQHTGGFVITQGKLSDLCPI 503

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFD 604
                  +    ++N   I+  G +K D L L  LT ++K+ D L Q      +L+ IP D
Sbjct: 504  LNARMENRTCIEWNKDDIDTLGFLKIDVLALGMLTCIRKAFDLLKQHYDIEHNLASIPPD 563

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662
            D + Y ++    T+G+FQ+ES   +  L  ++P C  D++  V++ RPGPI   +V+   
Sbjct: 564  DQDVYDMICKADTIGVFQIESRAQQSMLPRLKPRCFYDLVIEVAIVRPGPIQGDMVHPYL 623

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI- 721
             R+N +E++V     ++ +LK+T GV ++QE  M+IA + +G++ +EAD LRR+M     
Sbjct: 624  RRRNDEEEVVYPKKELEDILKKTLGVPLFQEHAMKIAIVAAGFTATEADELRRSMATFKS 683

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K  ++  +++ ++G  KNG  K  A  IF+ L  F  YGF +SHAA++A++ Y ++W+K 
Sbjct: 684  KGIVNTLRDKLVNGMVKNGYEKDFAERIFKQLEGFGSYGFPESHAASFALLVYVSSWIKC 743

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----NRIY 836
            H+P  F AA +  +     +  +   DAR  ++++    +N    D  + +       + 
Sbjct: 744  HHPDVFAAALLNSQPMGFYRPAQIVIDARNHDVKVREIDINHSFWDNTLENIPGEQCALR 803

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
                 IKG+     + +  A   +PF  +           ++   LE L  A A    G+
Sbjct: 804  LGFRQIKGLREEEMQILTNART-QPFTHIHQLLE----AGISHTALEKLADADAFRSIGF 858

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R Q       +            ++   +FA +       + L +      +    ++ 
Sbjct: 859  DRRQAFWEASAL-----------ADRPMGLFAGQPSPREADVELPQ---MTLAEHVIHDY 904

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
                     HP+   +  L  +G    +          +++A +V+ +Q+  T  G  I 
Sbjct: 905  ATTSLSLKQHPVSFVREQLDALGAVPSKALELIPDSRIVKVAGLVLVRQRPGTASG--IC 962

Query: 1017 WVTFSEPAKEYEANFF 1032
            ++T  +         F
Sbjct: 963  FITVEDETGTANLVVF 978


>gi|116251876|ref|YP_767714.1| DNA polymerase III subunit [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256524|emb|CAK07609.1| putative DNA polymerase II subunit [Rhizobium leguminosarum bv.
            viciae 3841]
          Length = 1086

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 266/1043 (25%), Positives = 451/1043 (43%), Gaps = 80/1043 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  LQV + +S L GA S   +          A+ I D N+L   +   + + A G++ 
Sbjct: 2    RYAELQVTTHFSFLRGASSAEELFATAKRLGIEALGIVDRNSLAGIVRALEASRATGLRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC+LD+                    SI++  +    Y RL  L++        K + 
Sbjct: 62   VVGCRLDLQDGM----------------SILVYPTDRAAYSRLTRLLTLGKSRGG-KANC 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR-LLTFKKLFGDRLYVNLQ- 187
             + L  +    +EGLI +              +         L    ++FGD  Y++L  
Sbjct: 105  ILHLDDVALY-SEGLIGI-----------LLPDLPDETCAIQLRKMAEVFGDLAYLSLCL 152

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R R  D+ R  ++  LA  H++  V TN+ LF      +  DV+  V + T +      R
Sbjct: 153  RRRPNDQMRLHEMSNLAVRHKVKTVVTNDVLFHDPSRRQLQDVVTCVRNRTTIDDVGFER 212

Query: 248  VTPDHYLKNRS-EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                      + EM  +FS  PEAL  T+EI  RC F L+      P  I       Q  
Sbjct: 213  ERHADRYLKPATEMERLFSRFPEALTRTMEIVDRCRFSLEELTYQYPEEIVVPGKTAQAS 272

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E          +  R   G  A         + +  EL +I  M+++ YFL V   +++
Sbjct: 273  LEQY----VWECVPNRYPDGLPAH------VEKTIRHELALIEIMRYAPYFLTVFSIVRF 322

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I    GRGS A S   + L +T IDP    LLFERF++ +R   PD D+DF  +R
Sbjct: 323  ARSQGIL-CQGRGSAANSAVCFVLGVTSIDPETNDLLFERFVSQERDEPPDIDVDFEHER 381

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+++   YG  + A   T    + K A+RDVG+AL +P   +  L   +       
Sbjct: 382  REEVIQWIYETYGRNKAALCATVTRYRTKGAIRDVGKALGLPEDLIKALSSGVWAW---- 437

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             + +      R       D  +   L+++Q+L G  RH   H  G V+    L  LVP+ 
Sbjct: 438  -TEEVGEKQVRELNLNPDDRRLALTLQLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIE 496

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDD 605
                 D  V +++   +E    +K D L L  LT + KS      ++ V +DL+ IP ++
Sbjct: 497  PASMVDRQVIEWDKDDVEALKFMKVDVLALGMLTCMAKSFAFLNQEKDVDLDLATIPQEE 556

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
             +TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI   +V+    
Sbjct: 557  AKTYAMIRKADTLGTFQIESRAQMSMLPRLKPRTFYDLVIQVAIVRPGPIQGDMVHPYLR 616

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R+ GKEK+    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M      
Sbjct: 617  RREGKEKVEYPTPELEAVLHKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATFKFT 676

Query: 724  -EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              + + K++ ++G  +NG +   A   F  L  F  YGF +SHAA++A+I+Y ++++K H
Sbjct: 677  GGVSRFKDKLVNGMVRNGYTSEFAEKTFSQLEGFGSYGFPESHAASFALIAYASSYIKCH 736

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------NRIY 836
            +P  F AA +  +        +  +DAR+  ++I P  VN    D  +        + + 
Sbjct: 737  FPDVFCAALLNSQPMGFYAPAQIVRDAREHGVEIRPVCVNQSRWDCTLEPVGDTDRHAVR 796

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CFG 895
              +  ++G+ T  A  I+ A AD+ FDS++D   R     +    L  L  A A     G
Sbjct: 797  LGMRMVRGLATADAARIVAARADQAFDSVDDMWRR---SGVPAASLVELAEADAFHPSLG 853

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF-----SDKITLEKFSVENSSV 950
              R   L ++  ++                +FA             +    +        
Sbjct: 854  LERRDALWAIKALRDE-----------PLPLFAAAAEREAKTIAEQQEPAVELRQMTQGH 902

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                +    G     HP+   +  L +  I    E+++   G  +  A +V+ +Q+  + 
Sbjct: 903  NVVLDYGHAGLTLREHPVSFLRRELAERRIVTCTEAMSARDGRWLMAAGLVLVRQRPGSA 962

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
            KG  + ++T  + +       +P
Sbjct: 963  KG--VIFMTIEDESGVANVVIWP 983


>gi|260101642|ref|ZP_05751879.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            helveticus DSM 20075]
 gi|260084543|gb|EEW68663.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            helveticus DSM 20075]
          Length = 1041

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 331/1024 (32%), Positives = 537/1024 (52%), Gaps = 44/1024 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    ++++++        A+ + D N  +  + F + A  AGI+P++G 
Sbjct: 12   LQNLSSFTLLDSPTKVSDLIETAKKRGYQAVGLADVNVTYGLVNFYELAKKAGIKPLLGM 71

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-YLLDQGKQSVRIC 132
            QL ++          G         ++    T  GY  L+ L S + +L D G+ +  + 
Sbjct: 72   QLRLN----------GLVDSTQKYDLIAFAKTNAGYHNLLRLSSAINFLTDNGQNNNVLT 121

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +   + L+++   +   +   F  N  Q+    +   K+L  D LY+ +  +   
Sbjct: 122  LKDLSKYLADLLLIVPANTKSELLSLFETNK-QLGSDLIRDLKELTSD-LYLGVYANPSM 179

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPD 251
             +     V  L+   +LPL+AT +S +L+  D      L A+A    +       +    
Sbjct: 180  -QNYIDYVRSLSKQFDLPLLATEDSEYLNPHDQFLQKTLRAIATGDKIQDALPLAKQEGS 238

Query: 252  HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            HYL    +++  +   DL +A+ NT ++A +C+  +    P+LP++ +K+        E 
Sbjct: 239  HYLVEAEQLLQRYHEFDLDDAVNNTWQVAEKCNAEVVFQKPVLPKYHQKKFV----TSEE 294

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L   A  GL+ R  Q          +Y++RL++EL VI +M F  YFLIV D I +  +
Sbjct: 295  YLHYLAQTGLQQRFGQ-----NKIPAEYQKRLNYELRVINQMGFDDYFLIVWDVINYCHR 349

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS  GS+ +Y+L IT++DP+ ++LLFERFLNP R  MPD D+D    +RD 
Sbjct: 350  VQITTGPGRGSACGSLVSYSLRITEVDPIEYNLLFERFLNPSRHEMPDIDLDIPDVQRDT 409

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +   ++ +    IP         
Sbjct: 410  VIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEIKKWVDAIPYSKGKITLK 469

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +A       R    A P    L + +  LEGL RH S HAAG+VI D  ++ +  +    
Sbjct: 470  EAYQQSRELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDNSIAGISGLQ-AG 528

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
               +PVTQ   K++E  GL+K DFLGL+ LT+L   L+ + Q+G+K+D + IP +D +T 
Sbjct: 529  PLGIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILNLIRQQGIKIDPNQIPLNDAQTL 588

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T  +FQ ES G+RQ L  + PD  ED++A+ +LYRPGP+ NI  +  RKNG+E
Sbjct: 589  QLFQQGKTDAVFQFESGGIRQVLRKLHPDNFEDLVAVNALYRPGPMQNIDAFVRRKNGQE 648

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ ++++K
Sbjct: 649  AVRYPDPSLKKILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQEK 708

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FI+G  K G +K +A  +++ + +FA+YGFN+SHA AY  I+Y  A++K HYP  F  
Sbjct: 709  GKFIAGTIKQGHTKAVAERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPAAFYT 768

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +        K + +   A++ NI+I+PP +N   +++ + + +I   L AIKG+    
Sbjct: 769  AMLN--SAAGAKAQDYIMQAQEANIKILPPDINHSSLEYALKNKQILVGLKAIKGLRVDF 826

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            AR I  A   KP+ SL DF  R+D K L    +++L+ AGA D    +R +LL + D I 
Sbjct: 827  AREI--ADNTKPYKSLNDFLRRIDPKFLQADAIKALIMAGAFDGLEKNRNELLVNCDEII 884

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               Q   +N      ++             L+       + +   E++VLGF  +  PL 
Sbjct: 885  ANVQLTGQN-----ISL-----SEILGNAPLKPADEPTGAEKAAMEEKVLGFSTTTSPLI 934

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K   +   +      G  +     ++  +Q +T+ G  + + +F++ + E E 
Sbjct: 935  AVQKFAQKFNSRPLNQFQLNESGVGV---GKLIRFKQIRTKNGKNMAFASFADTSGEQEV 991

Query: 1030 NFFP 1033
              FP
Sbjct: 992  VIFP 995


>gi|71151844|sp|Q8PN74|DNAE2_XANAC RecName: Full=Error-prone DNA polymerase
          Length = 1083

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 264/1047 (25%), Positives = 456/1047 (43%), Gaps = 87/1047 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + + A G++
Sbjct: 46   PAYAELHCLSDFSFLRGASSAEQLFARAQQCGYSALAITDECSLAGIVRGLEASRATGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                      VLLV  A GY +L  L++        K +
Sbjct: 106  LIVGSEFTLVDG----------------TRFVLLVENAHGYPQLCGLITTAR-RAASKGA 148

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+  + +Q    +         +  +   +   +   AE+     +++FG+R ++ ++ 
Sbjct: 149  YRLDRAEVQAQFRD--------VAPGVFALWLPGAQPQAEQGA-WLQQVFGERAFLAVEL 199

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D   R   +  LA    +  +A+ +       +    D L A+ H T+   +    
Sbjct: 200  HREQDDVARLHVLQALAQQLGMTALASGDVHMAQRRERIVQDTLTAIRH-TLPLAECGAH 258

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +  +     R+            L+ TVE+A+RC+F +   +   PR +  E        
Sbjct: 259  LFRNGERHLRTRRALGNIYPDALLQATVELAQRCTFDISKISYTYPRELVPEG----HTP 314

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR    AG+  R   G  A        R+ ++ EL +IA  K+  +FL V D +++A
Sbjct: 315  TSYLRQLTEAGIRRRWPGGITA------KVREDIEKELALIALKKYEAFFLTVQDVVRFA 368

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++ NI    GRGS A S   YAL IT ++P    LL  RFL+  R   PD D+DF  +RR
Sbjct: 369  REQNIL-CQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFEHERR 427

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV +KYG ER A   T    + K+A+RDV +A  +P  Q+  L            
Sbjct: 428  EEVLQYVYSKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGETP 487

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              Q I +        LA+P ++++L +++ L    RH S H  G VI D PLS LVP+  
Sbjct: 488  MDQRIEE----AGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPLSLLVPVEN 543

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
               ++  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P  D 
Sbjct: 544  AAMANRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRNYSIATLPGGDA 603

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 604  PTYKMIQRADTVGVFQIESRAQMAMLPRLKPAAFYDLVIEVAIVRPGPIQGDMVHPYLRR 663

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-E 723
            + G+E++    P ++ +LK T GV ++QEQVM++    + YS  EAD LRR+M    +  
Sbjct: 664  RQGREEVNYPSPAVEDILKPTLGVPLFQEQVMELLMHAADYSEDEADNLRRSMAAWRRGG 723

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +M++ + R        G + +    IFE +  F  YGF +SHAA++A + Y + W+K H 
Sbjct: 724  DMEQHRTRVRERMQGKGYASSFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRHE 783

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQD-----ARQFNIQIMPPSVNTPCVDFKVGDN----- 833
            P  F    +  +        +  QD       +  ++++P  V     D  +        
Sbjct: 784  PAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVLHSDWDNTLVGGRPWRS 843

Query: 834  --------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                     I   +  + G+    A+ I+ A   + F  + D C R     L+ +   +L
Sbjct: 844  AADPGEQPAIRLGMRQVAGLSQVVAQRIVAARTQRAFADIGDLCLRA---ALDEKARLAL 900

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              AGAL     +R     ++  ++     +                   S +    +F  
Sbjct: 901  AEAGALQGMVGNRNAARWAMAGVEARCPLL-----------------PGSPEERPVEFEA 943

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
              +      + R +G     HP+ + +P +R+  I G  E      G+ + +A +V  +Q
Sbjct: 944  PRAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRELQGRRHGSGVHVAGLVTQRQ 1003

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  T KG+   +VT  +         +
Sbjct: 1004 RPATAKGT--IFVTLEDEQGMINVIVW 1028


>gi|227893479|ref|ZP_04011284.1| possible DNA-directed DNA polymerase [Lactobacillus ultunensis DSM
            16047]
 gi|227864704|gb|EEJ72125.1| possible DNA-directed DNA polymerase [Lactobacillus ultunensis DSM
            16047]
          Length = 1035

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 333/1024 (32%), Positives = 528/1024 (51%), Gaps = 44/1024 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    + ++L         A+ +TD N  +  + F + A  AGI+P++G 
Sbjct: 6    LQNLSSFTLLDSPTKIVDLLKTAKEKGYQAVGLTDVNVTYGLVNFYELAKRAGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
            Q+ ++          G         +++      GY  L+ L S + L  D G+    + 
Sbjct: 66   QVRLN----------GLIDSTQKYDLIVFAKNNAGYHNLLRLSSAINLLTDNGQNDKILT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L+ L +   + L+++   +   +   F  N  Q+    +   KKL  + LY+ +      
Sbjct: 116  LTELTKYLDDLLVIVPANTHSELLNLFETNQ-QLGSDYIRDLKKLTSE-LYLGVYASNSS 173

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRPRVTPD 251
            + Y    V  LA   ELPLVAT +  +L   D      L A+     +       +    
Sbjct: 174  ESYV-DYVHALAKQFELPLVATEDCEYLRPRDQFLQKTLRAIRSGQKMQDTIPLAKQDGS 232

Query: 252  HYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            H+L N  EM+  +      +A+ NT +IA  C+  +    P+LP++ +    D     E 
Sbjct: 233  HFLANAEEMLERYHRFNLDDAVNNTWKIAEECNAEVIFQKPVLPKYHQ----DKFATSEE 288

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L + A  GL+ R  +G         +Y++RL++EL VI +M F  YFLIV D I +  +
Sbjct: 289  YLHHLAQTGLQARFGKG-----KVPAEYQKRLNYELRVINQMGFDNYFLIVWDVINYCHR 343

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS  GS+ +YAL IT++DPL++ LLFERFLNP R  MPD D+D     RD 
Sbjct: 344  VKITTGPGRGSACGSLVSYALRITEVDPLKYHLLFERFLNPARHEMPDIDLDIPDIHRDT 403

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +   +V++  + IP         
Sbjct: 404  VIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEVNKWARAIPYSKDKMTLK 463

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +A  +    R    A P    L + + +LEGL RH S HAAG+VI D  ++ +  +    
Sbjct: 464  RAYEESRELRLLVDATPENKLLFKTAMELEGLPRHYSIHAAGLVISDDSIAGISGLQ-AG 522

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
               +PVTQ   K++E  GL+K DFLGL+ LT+L   LD + Q+GV +D + IP +D  T 
Sbjct: 523  PLGIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILDLVRQQGVNIDPNKIPLNDQATL 582

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T  +FQ ES G+RQ L  + PD  ED++A+ +LYRPGP+ NI  +  RKNG+E
Sbjct: 583  KLFQEGKTDAVFQFESGGIRQVLRKLHPDDFEDLVAVNALYRPGPMQNIDTFIARKNGQE 642

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ +++++
Sbjct: 643  PVKYPDPSLKQILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQER 702

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FI+G  K G  K +A  ++  + +FA+YGFN+SHA AY  I++  A++K HYP  F  
Sbjct: 703  SKFITGTVKKGHPKEVAERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPAAFYT 762

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +        +   +   A++ +I I+ P +N   +D+ + +N I   L AIKG+    
Sbjct: 763  AMLNSSTAVKAQ--GYIMQAQEADIHILAPDINRSHLDYSLENNDILVGLKAIKGLRVDF 820

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A+ I E      + SL DF  R+D+K L    +E+L+ AGA D    +R +LL +   I 
Sbjct: 821  AKEIAENKKQ--YKSLSDFLRRIDAKFLQVDAIEALIMAGAFDQIEDNRNELLANCKEII 878

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               Q   +N      ++             L+      ++ + E E++VLGF  +  PL 
Sbjct: 879  ANVQLTGQN-----ISL-----SEILGDAPLKPAEKPTNAEKAEMEEKVLGFATTTTPLV 928

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K   +   +      G ++     ++  +Q +T+ G  + + TF++ + + E 
Sbjct: 929  AVQKYAKKFDARALNQFQINESGISV---GKLMKYKQIRTKNGKTMAFATFADSSSQQEV 985

Query: 1030 NFFP 1033
              FP
Sbjct: 986  IIFP 989


>gi|21241953|ref|NP_641535.1| DNA polymerase III subunit alpha [Xanthomonas axonopodis pv. citri
            str. 306]
 gi|21107345|gb|AAM36071.1| DNA polymerase III alpha chain [Xanthomonas axonopodis pv. citri str.
            306]
          Length = 1065

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 264/1047 (25%), Positives = 456/1047 (43%), Gaps = 87/1047 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + + A G++
Sbjct: 28   PAYAELHCLSDFSFLRGASSAEQLFARAQQCGYSALAITDECSLAGIVRGLEASRATGVR 87

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                      VLLV  A GY +L  L++        K +
Sbjct: 88   LIVGSEFTLVDG----------------TRFVLLVENAHGYPQLCGLITTAR-RAASKGA 130

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+  + +Q    +         +  +   +   +   AE+     +++FG+R ++ ++ 
Sbjct: 131  YRLDRAEVQAQFRD--------VAPGVFALWLPGAQPQAEQGA-WLQQVFGERAFLAVEL 181

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D   R   +  LA    +  +A+ +       +    D L A+ H T+   +    
Sbjct: 182  HREQDDVARLHVLQALAQQLGMTALASGDVHMAQRRERIVQDTLTAIRH-TLPLAECGAH 240

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +  +     R+            L+ TVE+A+RC+F +   +   PR +  E        
Sbjct: 241  LFRNGERHLRTRRALGNIYPDALLQATVELAQRCTFDISKISYTYPRELVPEG----HTP 296

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR    AG+  R   G  A        R+ ++ EL +IA  K+  +FL V D +++A
Sbjct: 297  TSYLRQLTEAGIRRRWPGGITA------KVREDIEKELALIALKKYEAFFLTVQDVVRFA 350

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++ NI    GRGS A S   YAL IT ++P    LL  RFL+  R   PD D+DF  +RR
Sbjct: 351  REQNIL-CQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFEHERR 409

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV +KYG ER A   T    + K+A+RDV +A  +P  Q+  L            
Sbjct: 410  EEVLQYVYSKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGETP 469

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              Q I +        LA+P ++++L +++ L    RH S H  G VI D PLS LVP+  
Sbjct: 470  MDQRIEE----AGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPLSLLVPVEN 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
               ++  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P  D 
Sbjct: 526  AAMANRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRNYSIATLPGGDA 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 586  PTYKMIQRADTVGVFQIESRAQMAMLPRLKPAAFYDLVIEVAIVRPGPIQGDMVHPYLRR 645

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-E 723
            + G+E++    P ++ +LK T GV ++QEQVM++    + YS  EAD LRR+M    +  
Sbjct: 646  RQGREEVNYPSPAVEDILKPTLGVPLFQEQVMELLMHAADYSEDEADNLRRSMAAWRRGG 705

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +M++ + R        G + +    IFE +  F  YGF +SHAA++A + Y + W+K H 
Sbjct: 706  DMEQHRTRVRERMQGKGYASSFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRHE 765

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQD-----ARQFNIQIMPPSVNTPCVDFKVGDN----- 833
            P  F    +  +        +  QD       +  ++++P  V     D  +        
Sbjct: 766  PAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVLHSDWDNTLVGGRPWRS 825

Query: 834  --------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                     I   +  + G+    A+ I+ A   + F  + D C R     L+ +   +L
Sbjct: 826  AADPGEQPAIRLGMRQVAGLSQVVAQRIVAARTQRAFADIGDLCLRA---ALDEKARLAL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              AGAL     +R     ++  ++     +                   S +    +F  
Sbjct: 883  AEAGALQGMVGNRNAARWAMAGVEARCPLL-----------------PGSPEERPVEFEA 925

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
              +      + R +G     HP+ + +P +R+  I G  E      G+ + +A +V  +Q
Sbjct: 926  PRAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRELQGRRHGSGVHVAGLVTQRQ 985

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  T KG+   +VT  +         +
Sbjct: 986  RPATAKGT--IFVTLEDEQGMINVIVW 1010


>gi|119716129|ref|YP_923094.1| error-prone DNA polymerase [Nocardioides sp. JS614]
 gi|119536790|gb|ABL81407.1| error-prone DNA polymerase, DnaE-like protein [Nocardioides sp.
            JS614]
          Length = 1145

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 283/1076 (26%), Positives = 455/1076 (42%), Gaps = 100/1076 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-----AA 65
            +  L  HSS+S L+GA   ++++ +        +AITD +  + A  F++ A        
Sbjct: 53   YAELHCHSSFSFLDGASGPDHLVLEALRLGLHGLAITDHDGFYGAPLFAETAQLHATNEQ 112

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
             ++   G +L + +        Q     P    +++L    EGY RL   ++   L    
Sbjct: 113  SLKTAYGAELSLGL-----TRPQHGVADPEGGHLLVLARGVEGYHRLAGAITDAQLRGDE 167

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184
            K      L+ L E G +  ++LTG   G + RA   +    A   L     LFG D + V
Sbjct: 168  KGRPVYDLAELAERGRDHWLVLTGCRKGAVRRALLEHGPVAAAAELDRLTALFGHDNVVV 227

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVVSQ 242
             L  H    D      +  LA  H L +VATNN      E +   D + AV    ++   
Sbjct: 228  ELIDHGYPTDSAHNDLLAALAADHGLRVVATNNVHHARPEQHRVADAMAAVRARRSLAEM 287

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                  +    L++  EMV  F+  P A+  +VE+A    F LQ   P LP+        
Sbjct: 288  DGWLPASGMACLRSGEEMVRRFARYPGAVARSVELADEIVFDLQKATPRLPKDGIPAG-- 345

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                    LR     G   R A G +         R  ++ EL +IA   F GYF+IV D
Sbjct: 346  --HTPSTWLRELTERGFAQRYAGGPLETRA-----RASVEHELRIIAEKDFDGYFVIVHD 398

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             + +A+   I    GRGS A S   YAL IT IDP+ + L FERF++  R   PD D+DF
Sbjct: 399  IVAFARSRGIL-CQGRGSAASSAVCYALGITAIDPVFYRLPFERFISQHRDEEPDIDVDF 457

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EVI++V  +YG    AQ+      + K A+RD  +AL     Q D   K + + 
Sbjct: 458  DAGRREEVIQWVYERYGRHNAAQVANVVGYRPKMAVRDAAKALGHSPGQQDAWSKQVTSW 517

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                V+ +   +                ++ ++    G  RH   H+ G+V+ +RP+ ++
Sbjct: 518  --TTVATRDGGEHP------ADLHVPAPVVALANGFLGAPRHLGIHSGGMVLTERPIGEV 569

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601
            VP+ R       V Q++    E  GL+KFD LGL  L+ L   +  + +  G + +LS I
Sbjct: 570  VPIERARMDKRTVLQWDKDGCEYMGLVKFDLLGLGMLSALDHMMRIVEEHLGERWELSTI 629

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIV 659
            P ++   Y LL    ++G+FQ+ES      L  ++P    D+   ++L RPGPI    + 
Sbjct: 630  PKEEPAVYDLLCRADSVGVFQVESRAQIGTLPRLRPREFYDLAIEIALIRPGPIQGGAVH 689

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-G 718
             Y  R  G+E++   HP + P+L+ T+GV ++QEQ+M +A++L   +  EAD+LRRAM  
Sbjct: 690  PYIRRATGREEVEYAHPSLVPVLERTKGVPLFQEQLMDMARVLGDCTRDEADLLRRAMGS 749

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K+  E ++  K++   G ++ G+    A  I+  +  FA++GF +SHA ++A + Y ++W
Sbjct: 750  KRGIERIESIKDKLYEGMARKGLVGEEADAIYLKILSFANFGFAESHALSFAKLVYASSW 809

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ----------------------- 815
             K HYP  FLAA +  +       +    DAR+  ++                       
Sbjct: 810  CKLHYPGAFLAALLRAQPMGFYSPQSLVHDARRHGVEVLRPDLVRSAASADLEPLAVADG 869

Query: 816  ----------------IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                             +P + +      +     +   L A++G+    A  I+ A A+
Sbjct: 870  PVGLPRCLVDHPERTDWVPGTPDPTPAHRRDAAYAVRLGLDAVRGISAVVAERIVAARAE 929

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF----GYSRMQLLQSLDNIQKYAQWV 915
            +PF    D   R     L+ R LE+L  AGA D      G SR Q L +       A W 
Sbjct: 930  RPFADQADLSRRA---GLDARQLEALATAGAFDEAFPGGGLSRRQALWN-------AGWT 979

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            E                              +       +    G   + HP    +  L
Sbjct: 980  ESEEH----------LEGIRAAGPAPMLPEMDEVEVTMADLWATGITPAQHPFGHLRERL 1029

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            R  GIK   ++ +   G  + +A +V  +Q+  T  G  + ++   +         
Sbjct: 1030 RAAGIKSVADTASAEPGRRVHVAGLVTHRQRPGTAGG--VTFLNLEDETGMLNVIC 1083


>gi|111610197|gb|ABH11587.1| DNA-directed DNA polymerase alpha chain [Lactobacillus helveticus
            CNRZ32]
 gi|328467460|gb|EGF38535.1| DNA polymerase III, alpha subunit [Lactobacillus helveticus MTCC
            5463]
          Length = 1035

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 331/1024 (32%), Positives = 538/1024 (52%), Gaps = 44/1024 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    ++++++        A+ ++D N  +  + F + A  AGI+P++G 
Sbjct: 6    LQNLSSFTLLDSPTKVSDLIETAKKRGYQAVGLSDVNVTYGLVNFYELAKKAGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-YLLDQGKQSVRIC 132
            QL ++          G         ++    T  GY  L+ L S + +L D G+ +  + 
Sbjct: 66   QLRLN----------GLVDSTQKYDLIAFAKTNAGYHNLLRLSSAINFLTDNGQNNNVLT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +   + L+++   +   +   F  N  Q+    +   K+L  D LY+ +  +   
Sbjct: 116  LKDLSKYLADLLLIVPANTKSELLSLFETNK-QLGSDLIRDLKELTSD-LYLGVYANPSM 173

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPD 251
             +     V  L+   +LPL+AT +S +L+  D      L A+A    +       +    
Sbjct: 174  -QNYIDYVRSLSKQFDLPLLATEDSEYLNPHDQFLQKTLRAIATGDKIQDALPLAKQEGS 232

Query: 252  HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            HYL    +++  +   DL +A+ NT ++A +C+  +    P+LP++ +K+        E 
Sbjct: 233  HYLVEAEQLLQRYHEFDLDDAVNNTWQVAEKCNAEVVFQKPVLPKYHQKKFV----TSEE 288

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L   A  GL+ R  Q          +Y++RL++EL VI +M F  YFLIV D I +  +
Sbjct: 289  YLHYLAQTGLQQRFGQ-----NKIPAEYQKRLNYELRVINQMGFDDYFLIVWDVINYCHR 343

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS  GS+ +Y+L IT++DP+ ++LLFERFLNP R  MPD D+D    +RD 
Sbjct: 344  VQITTGPGRGSACGSLVSYSLRITEVDPIEYNLLFERFLNPSRHEMPDIDLDIPDVQRDT 403

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +   ++ +    IP         
Sbjct: 404  VIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEIKKWVDAIPYSKGKITLK 463

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +A       R    A P    L + +  LEGL RH S HAAG+VI D  ++ +  +    
Sbjct: 464  EAYQQSRELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDNSIAGISGLQ-AG 522

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
               +PVTQ   K++E  GL+K DFLGL+ LT+L   L+ + Q+G+K+D + IP +D +T 
Sbjct: 523  PLGIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILNLIRQQGIKIDPNQIPLNDAQTL 582

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T  +FQ ES G+RQ L  + PD  ED++A+ +LYRPGP+ NI  +  RKNG+E
Sbjct: 583  QLFQQGKTDAVFQFESGGIRQVLRKLHPDNFEDLVAVNALYRPGPMQNIDAFVRRKNGQE 642

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ ++++K
Sbjct: 643  AVRYPDPSLKKILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQEK 702

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FI+G  K G +K +A  +++ + +FA+YGFN+SHA AY  I+Y  A++K HYP  F  
Sbjct: 703  GKFIAGTIKQGHTKAVAERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPAAFYT 762

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +        K + +   A++ NI+I+PP +N   +++ + + +I   L AIKG+    
Sbjct: 763  AMLN--SAAGAKAQDYIMQAQEANIKILPPDINHSSLEYALKNKQILVGLKAIKGLRVDF 820

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            AR I  A   KP+ SL DF  R+D K L    +++L+ AGA D    +R +LL + D I 
Sbjct: 821  AREI--ADNTKPYKSLNDFLRRIDPKFLQADAIKALIMAGAFDGLEKNRNELLVNCDEII 878

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               Q   +N      ++             L+       + +   E++VLGF  +  PL 
Sbjct: 879  ANVQLTGQN-----ISL-----SEILGNAPLKPADEPTGAEKAAMEEKVLGFSTTTSPLI 928

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K   +   +      G  +     ++  +Q +T+ G  + + +F++ + E E 
Sbjct: 929  AVQKFAQKFNSRPLNQFQLNESGVGV---GKLIRFKQIRTKNGKNMAFASFADTSGEQEV 985

Query: 1030 NFFP 1033
              FP
Sbjct: 986  VIFP 989


>gi|149276053|ref|ZP_01882198.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39]
 gi|149233481|gb|EDM38855.1| DNA polymerase III, alpha subunit [Pedobacter sp. BAL39]
          Length = 1074

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 267/1037 (25%), Positives = 459/1037 (44%), Gaps = 72/1037 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  LQV +++S L GA     ++    A     IAITD N L   +          I  
Sbjct: 2    SYTELQVTTNFSFLRGASHPEEMVAHAYALGYKKIAITDHNTLAGVVRAHTATKGKEISI 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I  C+L++                   PS++   +    Y RL  L+S+  L  + K   
Sbjct: 62   IPACRLNLLDG----------------PSLLAYPTDMAAYTRLSALLSKGNLRAE-KGDC 104

Query: 130  RICLSWLQEIGTEGL--IMLTGGSSGPIDRAFFFNSSQVA-EKRLLTFKKLFGDRLYVNL 186
             +  + + E   EG+  I++       ++  F       A ++ L  +++  G+ LY+  
Sbjct: 105  HLYKTDVYE-HAEGMKFIVIPPQ---ELNTLF---DFDAAFKQDLTEYRQALGNSLYLAA 157

Query: 187  QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KD 244
             R ++G D  +  ++ QL+    +P+ ATN+  +      E  DVL  V     +     
Sbjct: 158  TRAYQGNDLKKMYRIAQLSADLHIPMAATNDVYYHDTSRRELQDVLTCVREKCTIHTAGF 217

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R     + +LK   EM+ +F   PEA+ +  EIA  C F L     + P  +  +     
Sbjct: 218  RLHKNAERHLKPIDEMLRLFRQYPEAIRHAQEIADACEFSLSTLKYVYPEELTTDG---- 273

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +  + EL + A  G   R            +     + +EL  +  M ++ YFL V D +
Sbjct: 274  RTPQQELTHLAWEGANERYENN------IPESISAAIRYELKFMEEMNYASYFLTVYDIV 327

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A++  I    GRGS A S   Y L IT +DP +F LLFERF++  R   PD D+DF  
Sbjct: 328  RFARQQGIL-CQGRGSAANSTVCYCLGITAVDPTKFELLFERFISSARNEPPDIDVDFEH 386

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EVI+Y+ NKYG +R A + T      K A+RDVG+A+ +    + RL   I     
Sbjct: 387  ERREEVIQYIYNKYGRDRAAIVATVTQQHKKGAIRDVGKAMGLSVDTISRLSSAIWEFTE 446

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                  +I +    +     DP + ++L+++ ++ G  R    H  G VI    L+ L P
Sbjct: 447  DWFERDSILE----KGLNPDDPHLRKVLQLTGQMIGFPRQLGQHTGGFVITQGKLTDLCP 502

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPF 603
            +      +    ++N   I+  G +K D L L  LT ++K  D   +   +   L+ +P 
Sbjct: 503  ILNARMDNRTNIEWNKDDIDALGFLKIDVLALGMLTCIRKCFDLAKKHHQRDLTLANVPQ 562

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662
            DD E Y +++   TLG+FQ+ES   +  L  ++P C  D++  V++ RPGPI   +V+  
Sbjct: 563  DDPEVYQMISHADTLGVFQIESRAQQSMLPRLRPKCFYDLVIEVAIVRPGPIQGDMVHPY 622

Query: 663  -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R+NG+EK       +  +LK T GV ++QEQ M+IA + +G++ +EAD LRR+M    
Sbjct: 623  LRRRNGEEKEEYPSEALREILKRTLGVPLFQEQAMKIAIVAAGFTPTEADELRRSMATFK 682

Query: 722  -KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             K  +  QK++ I G   NG     A  IF+ L  F  YGF +SHAA++A++ Y ++W+K
Sbjct: 683  VKGMVSTQKKKLIEGMIANGYEAAFAERIFKQLEGFGSYGFPESHAASFALLVYVSSWIK 742

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RI 835
             H P  F A  +        +  +   DA++  +++    VN    D  + +       +
Sbjct: 743  CHLPDVFAAGLLNSMPMGFYQPAQIVIDAKKHGVEVREADVNHSDWDNLLEEKSGDWHAM 802

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                  IKG+       +++A    P+ ++ + C       +++  LE L  A A    G
Sbjct: 803  RLGFRQIKGLAEDEILALIQARTT-PYKNIHELCE----AGVSQSTLEKLADADAFRSMG 857

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R Q L  +  +            ++   +F  +      +  +E   +  +      +
Sbjct: 858  LDRRQALWEVSAL-----------QDRPIALFQGQDSESKSEPQIE-LPLMTAGEHVVQD 905

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                      HP+   +  LR + +    E      G  +++A +V+ +Q+  T KG  +
Sbjct: 906  YASTSLSLKAHPVSFVREQLRLLRVVSTGELSEIKDGTPLKVAGLVLVRQRPGTAKG--V 963

Query: 1016 GWVTFSEPAKEYEANFF 1032
             ++T  +         F
Sbjct: 964  CFITIEDETGFSNLVVF 980


>gi|294625888|ref|ZP_06704502.1| DNA polymerase III alpha chain [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 11122]
 gi|292599798|gb|EFF43921.1| DNA polymerase III alpha chain [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 11122]
          Length = 1065

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 263/1047 (25%), Positives = 457/1047 (43%), Gaps = 87/1047 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + + A G++
Sbjct: 28   PAYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEASRATGVR 87

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                     +VLLV  A GY +L  L++        K +
Sbjct: 88   LIVGSEFTLVDG----------------IRLVLLVENAHGYPQLCGLITTAR-RAASKGA 130

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+  + +Q    +   ++ G     +   +   +   AE+     +++FG+R ++ ++ 
Sbjct: 131  YRLGRAEVQAQFRD---VVPG-----VFALWLPGAQPQAEQGA-WLQQVFGERAFLAVEL 181

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D   R   +  LA    +  +A+ +       +    D L A+ H T+   +    
Sbjct: 182  HREQDDVARLQVLQALAQQLGMTALASGDVHMAQRRERIVQDTLTAIRH-TLPLAECGAH 240

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +  +     R+            L+ TVE+++RC+F +   +   PR +  E        
Sbjct: 241  LFRNGERHLRTRRALGNIYPDALLQATVELSQRCTFDISKISYTYPRELVPEG----HTP 296

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR    AG+  R   G  A        R+ ++ EL +IA   +  +FL V D +++A
Sbjct: 297  TSYLRQLTEAGIRKRWPGGISA------KVREDIEKELALIAFKNYEAFFLTVQDVVRFA 350

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  NI    GRGS A S   YAL IT ++P    LL  RFL+  R   PD D+DF  +RR
Sbjct: 351  RDQNIL-CQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFEHERR 409

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV +KYG ER A   T    + K+A+RDV +A  +P  Q+  L            
Sbjct: 410  EEVLQYVYSKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGETP 469

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              Q I +        LA+P ++++L +++ L    RH S H  G VI D PLS LVP+  
Sbjct: 470  MEQRIEE----AGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPLSLLVPVEN 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
                +  + Q++   +E   L+K D L L  LT ++K+L+ +   RG    ++ +P DD 
Sbjct: 526  AAMPNRTIIQWDKDDLETMQLLKVDCLALGMLTCIRKTLELVRGHRGRNYSIATLPGDDA 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 586  PTYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGDMVHPYLRR 645

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-E 723
            + G+E++    P ++ +LK T GV ++QEQVM++    + YS  EAD LRR+M    +  
Sbjct: 646  RQGREEVNYPSPAVEDILKPTLGVPLFQEQVMELLMHAADYSEDEADNLRRSMAAWRRGG 705

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +M++ + R        G + +    IFE +  F  YGF +SHAA++A + Y + W+K H 
Sbjct: 706  DMEQHRTRVRERMQGKGYASSFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRHE 765

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQD-----ARQFNIQIMPPSVNTPCVDFKVGDN----- 833
            P  F    +  +        +  QD       +  ++++P  V     D  +        
Sbjct: 766  PAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVLHSDWDNTLVGGRPWRS 825

Query: 834  --------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                     I   +  + G+    A+ I+ A   + F  + D C R     L+ +   +L
Sbjct: 826  AADPGEQPAIRLGMRQVAGLSQVVAQRIVAARTQRAFADIGDLCLRA---ALDEKARLAL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              AGAL     +R     ++  ++     +                   S +    +F  
Sbjct: 883  AEAGALQGMVGNRNAARWAMAGVEARRPLL-----------------PGSPEERPVEFEA 925

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
              +      + R +G     HP+ + +P +R+  I G  E      G+ + +A +V  +Q
Sbjct: 926  PRAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLSELQGRRHGSGVHVAGLVTQRQ 985

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  T KG+   +VT  +         +
Sbjct: 986  RPATAKGT--IFVTLEDEQGMINVIVW 1010


>gi|284031892|ref|YP_003381823.1| DNA polymerase III subunit alpha [Kribbella flavida DSM 17836]
 gi|283811185|gb|ADB33024.1| DNA polymerase III, alpha subunit [Kribbella flavida DSM 17836]
          Length = 1145

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 290/1078 (26%), Positives = 460/1078 (42%), Gaps = 104/1078 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L VHS++S L+GA S   ++++       AIA+TD +  + A  F++ A A  +  +
Sbjct: 66   YAELHVHSNFSFLDGASSPEQLVEEAVRHGLHAIALTDHDGFYGAARFAETADAYAMPTV 125

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L + +        Q     P    +++L    EGY RL   ++  +L    K    
Sbjct: 126  YGAELSLGLPG-----PQNGVADPDGSHLLVLAEGKEGYHRLAGAMTEAHLAGGEKGRPV 180

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAF-----FFNSSQVAEKRLLTFKKLFG-DRLYV 184
              L  L   G +  ++LTG   G + +A          +  A + L     LFG DR+ V
Sbjct: 181  YDLEELAARGRDHWLILTGCRKGAVRQALTTASSPAAGAAAARRELDRLTALFGRDRVVV 240

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVVSQ 242
             L  HR          +  LA    LP VAT N  +    D+     L AV    ++   
Sbjct: 241  ELIDHRMPLSSTHNQALADLAAAAGLPTVATGNVHYAQPRDHRLASALAAVRARRSLDEM 300

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                   P  +L + +EM   F + P A+  +VE+A + +F L+   P LP+        
Sbjct: 301  DGWLPAGPAAFLHSGAEMAMKFRNFPGAVARSVELADQLAFRLRAAQPRLPKIDVPAG-- 358

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                +   LR     G   R             D  QRL+ EL+VI +  F GYFLIV D
Sbjct: 359  --LTQMGWLRQLVFEGAAERYG-----TRDQRPDAYQRLERELDVIEQRDFPGYFLIVWD 411

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+++ I    GRGS A S   Y L +T +D + + L FERFL   R   PD D+DF
Sbjct: 412  MVRYAREHGIL-CQGRGSAANSAVVYCLGVTAVDSILYGLPFERFLAATRSEEPDIDVDF 470

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              DRR+EVI+Y+  KYG    AQ+    S + K A+RD+ +AL     Q D   K +   
Sbjct: 471  DSDRREEVIQYMYGKYGRRNAAQVANVISYRPKMAVRDMAKALGYSTGQQDAWSKQVDGW 530

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
             A   S                      ++E++ +L    RH   H+ G+V+ ++P+ ++
Sbjct: 531  SADLSS--------------TDHDIPPLVVEMATELLKAPRHLGIHSGGMVLTEQPVGEV 576

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLI 601
            VP+         V Q++       GL+KFD LGL  L  +Q  +D +A R G +  L  I
Sbjct: 577  VPIEHARMEKRTVLQWDKDDCAYMGLVKFDMLGLGMLAAIQYCIDLVADRLGERWQLHTI 636

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIV 659
            P ++   Y  L    ++G+FQ+ES      L  ++P    D+   ++L RPGPI    + 
Sbjct: 637  PKEEQGVYDQLCRADSVGVFQVESRAQMATLPRLRPRRFYDLACEIALIRPGPIQGGAVH 696

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-G 718
             +  R  G+E I   HPL++P+L+ T+GV ++QEQ+MQ+A  + G    EAD+LRRAM  
Sbjct: 697  PFVRRMTGQEPITYPHPLLEPVLERTKGVPLFQEQLMQMAMAIGGIDGDEADLLRRAMGS 756

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K+  E++   K +  +G + NG++  +A +I+  +  FA++GF +SH+ ++A++ Y + W
Sbjct: 757  KRGIEKISSLKTKLYAGMATNGLTGDVADDIYARIEAFANFGFAESHSISFALLVYASTW 816

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------ 832
             + HYP  FLAA +  +       +    DAR+  +++  P +    V   + D      
Sbjct: 817  FRLHYPAAFLAALLRAQPMGFYSPQSLVADARRHGVEVRRPDLQRSGVHALLEDLDDRRP 876

Query: 833  ------------------------------------NRIYYSLAAIKGVGTTTARHIMEA 856
                                                  +   LAA+K +GTT A  I+E 
Sbjct: 877  ARPTGMDSCLATVQPPIGPFDPDAPDTCADHRRDGAFAVRLGLAAVKSIGTTMAETIVEQ 936

Query: 857  SA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
                 P+  L D   R     L    LE+L  AGA DCFG  R Q L         A   
Sbjct: 937  RELHGPYADLADLARRT---GLTASQLEALATAGAFDCFGIDRRQALWQ-------AGRA 986

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
             + R ++    FA                          +    G     HP++  +  L
Sbjct: 987  AEERPDR----FAGITAAGPP----PMLPGMGEDEVTVADLWATGITTGKHPVEHVRAQL 1038

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               GI              +  A +V  +Q+  T  G  + ++   +          P
Sbjct: 1039 DAAGILSATALRTARPDTRVTAAGVVTHRQRPATASG--VTFLNLEDETGMINVIVSP 1094


>gi|327183463|gb|AEA31910.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL 1118]
          Length = 1035

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 328/1024 (32%), Positives = 530/1024 (51%), Gaps = 44/1024 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    + +++         A+ + D N  +  + F + A   GI+P++G 
Sbjct: 6    LQNLSSFTLLDSPTKVADLIKTAKEKGYSAVGLADINVTYGLVNFYEIAKKEGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
            Q+ ++          G         +++   T  GY  L+ L S + L  + G+    + 
Sbjct: 66   QIRLN----------GLIDSTQKYDLLVFAKTNAGYHNLLRLSSAINLLTENGQNDKILT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +   + L+++   +   +    F  + Q+    L   KK+  D  Y+ +      
Sbjct: 116  LKELTKYLEDLLVIIPANTRSELV-YLFETNQQLGSDYLRDLKKIVSD-FYLGVYA-AEN 172

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS-QKDRPRVTPD 251
            D+     V  L+   +LPLVA  +S +L   D      L A+     +       +    
Sbjct: 173  DQDYLDYVRSLSKQFDLPLVAVEDSEYLRPRDQFLQKTLRAIRSGQKMQDMVPLAKQDGS 232

Query: 252  HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            HY+ +  +M+  +   DL +A+ NT +IA +C+  +    P+LP++ +    +     E 
Sbjct: 233  HYMVDAEQMLERYHRFDLDDAVNNTAKIAEKCNAEVIFQKPVLPKYHQ----NKFLTSEE 288

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L   A  GL+ R  Q          +Y++RL++EL +I +M F  YFLIV D I +  +
Sbjct: 289  YLHYLAQTGLQARFGQ-----EKIPAEYQKRLNYELRIINQMGFDDYFLIVWDVINYCHR 343

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS  GS+ +Y+L IT++DPL++ LLFERFLNP R  MPD D+D     RD 
Sbjct: 344  VKITTGPGRGSACGSLVSYSLRITEVDPLKYHLLFERFLNPARHEMPDIDLDIPDIHRDT 403

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +  ++V++  + IP         
Sbjct: 404  VIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMAEVNKWARAIPFSKGKMTLK 463

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            QA  +    R    A      L   +  LEGL RH S HAAG+VI D  ++ +  +    
Sbjct: 464  QAYEESRELRLLVDATEENKLLFRTAMALEGLPRHYSIHAAGLVISDDSIAGISGLQ-AG 522

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
               +PVTQ   K++E  GL+K DFLGL+ LT+L   LD +  +GVK+D + IP +D +T 
Sbjct: 523  PLGIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILDLVRSQGVKIDPNKIPLNDAKTL 582

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T  IFQ ES G+R+ L  + PD  ED++A+ +LYRPGP+ NI  +  RKNGKE
Sbjct: 583  ELFQQGKTDAIFQFESEGIRRVLRQLHPDNFEDLVAVNALYRPGPMQNIDTFVARKNGKE 642

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ ++++K
Sbjct: 643  PVRYPDPSLKQILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQEK 702

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FI+G  KNG SK +   ++  + +FA+YGFN+SHA AY  I++  A++K HYP  F  
Sbjct: 703  SKFIAGVVKNGHSKEVGERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPAAFYT 762

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +        K +++   A++ NI+++ P +N   +++ + +N I   L AIKG+    
Sbjct: 763  AMLN--SSTSAKAQQYVMQAQEANIRVLTPDINHSQLEYTLQNNNILVGLKAIKGLRVDF 820

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A+ I  A+  KP+ SL DF  R+DSK L    +E+L+ AGA D    +R +LL +  +I 
Sbjct: 821  AKEI--AANTKPYKSLSDFLRRIDSKFLQIDAIEALIMAGAFDQIEDNRNELLANCKDII 878

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               Q   +N      ++             L+   +  +  + E E++VLGF  +  PL 
Sbjct: 879  ANVQLTGQN-----ISL-----SEILGDAPLKPAEIPTNGEKAEMEEKVLGFATTTTPLV 928

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K       +      G  +     ++S ++ +T+    + +  F++ + + E 
Sbjct: 929  AVQKYAQKFNALPLNQFQFNESGIGV---GKLMSLKRIRTKNDKTMAFAGFADSSSQQEV 985

Query: 1030 NFFP 1033
              FP
Sbjct: 986  IIFP 989


>gi|227823700|ref|YP_002827673.1| DNA polymerase III, alpha subunit [Sinorhizobium fredii NGR234]
 gi|254777927|sp|C3M9Z5|DNAE2_RHISN RecName: Full=Error-prone DNA polymerase
 gi|227342702|gb|ACP26920.1| DNA polymerase III, alpha subunit [Sinorhizobium fredii NGR234]
          Length = 1117

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 255/1063 (23%), Positives = 446/1063 (41%), Gaps = 90/1063 (8%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC- 63
            +   P+F  L   +++S LEGA     ++          + + D N++   +    KA  
Sbjct: 1    MSGEPTFHELGARTNFSFLEGAAPAEEMIVFAKKAGLSGLGVADRNSVAGVVRAHAKAKV 60

Query: 64   -AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                 QP  G +L                     P I+       G+  L  L+S   L 
Sbjct: 61   EDYPFQP--GARLVFA---------------DATPDILAYPKNRRGWGHLCRLLSVGNLR 103

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             + K    + L+ L E   + L+++  G              ++ E  L   K   G+RL
Sbjct: 104  AK-KGDCTLYLADLLEWQEDLLLIVMPGEG--------RPQPEILEALLEKLKASAGNRL 154

Query: 183  YVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ L  R+  +DR+  + +  +A + ++ L+ATN++L+         DV+ A+     ++
Sbjct: 155  YLGLAPRYDSFDRHDFAVLATVARSLDVRLLATNDALYHDPHYRPLADVVTAIREHVPIA 214

Query: 242  Q-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                  +   + +LK   EMV +F D PEA+ N  +  +R SF L   +         + 
Sbjct: 215  SAGFLLQKNAERHLKGPKEMVRLFRDYPEAIVNANKFFKRLSFSLDELSHQY-----PDE 269

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +   +     LR     G   R   G        +   +++++EL +I   K+  YFL V
Sbjct: 270  NAEGETPAESLRRLVAEGALERYPSGV------PEKVTRQIEYELELIHDKKYEPYFLTV 323

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
               +++A+  NI    GRGS A S   + L ITD+DP +F+LLF+RFL+ DR   PD D+
Sbjct: 324  HKLVKFARSVNIL-CQGRGSAANSSVCFCLGITDVDPQKFTLLFDRFLSRDRDEPPDIDV 382

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EVI+Y+   YG E         S ++++A R+V +A  +       L   + 
Sbjct: 383  DFEHERREEVIQYIYRTYGKEHAGLTAAVISYRSRSAGREVAKAFGLSEDVQSALVSSVW 442

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                 P +     + ++     +ADP   R+L  +  L    RH S H  G VI    L 
Sbjct: 443  GWGTSPFT----EEQAKGAGLDMADPLTRRVLAYASLLMNFPRHLSQHVGGFVITRDRLD 498

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            ++VP+      D  + +++   +++  ++K D L L  LT L ++  FL     K     
Sbjct: 499  EVVPIMNTAMPDRYMIEWDKDDLDQLKILKVDVLALGMLTCLARAFRFLEVHYGKPKTLA 558

Query: 601  IPFDDHE--TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              ++D +   Y ++    T+G+FQ+ES      L  ++P  + D++  V++ RPGPI   
Sbjct: 559  ELYEDQQAAVYDMICRADTVGVFQIESRAQMSMLPRLRPREMYDLVIEVAIVRPGPIQGN 618

Query: 659  VVYNNRKNGK-----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            +V+   K  +     E +    P +  +L+ T GV ++QEQ MQIA   +G+S SEAD L
Sbjct: 619  MVHPYLKRREAQRKGEPVDYPSPELKAVLERTLGVPLFQEQAMQIAITAAGFSPSEADRL 678

Query: 714  RRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM    +   +   + + I G  +NG  +  A   F  +  F +YGF +SHAA++A +
Sbjct: 679  RRAMATFKRTGTIHTFERKMIDGMVRNGYEREFAERCFNQIKGFGEYGFPESHAASFASL 738

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y ++W K +YP  F AA +  +        +  +DAR+  ++I+P  VN    D  +  
Sbjct: 739  VYASSWFKAYYPDIFCAALLNSQPMGFYAPAQLVRDAREHGVRILPVDVNHSDWDALLEG 798

Query: 833  -----------------------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                                     +      +KG+       ++    +  + S+ D  
Sbjct: 799  EAMFRKEAIDPRHGEMRDVIRSGKAVRLGFRLVKGLRQPDMEALVARRGEG-YRSVHDLW 857

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             R     L R VLE L  A A    G  R + L ++  +        +    +   +F  
Sbjct: 858  LR---SGLTRAVLERLADADAFRSIGLDRRRALWAVKAL-------NEQSAVERLPLFDG 907

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
               T              +     ++ R L      HP+   +    +MGI    +   T
Sbjct: 908  AGSTDLQVEPAVALPDMAAGEHVIHDYRYLTLSLKAHPVSFMRGDFARMGILSSRDLART 967

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              G  + +A +V+ +Q+  +  G  + ++T  +         +
Sbjct: 968  PAGRRVTVAGLVLVRQRPGSANG--VIFMTIEDETGVANIIVW 1008


>gi|227517968|ref|ZP_03948017.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0104]
 gi|227074586|gb|EEI12549.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0104]
          Length = 1109

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 319/1031 (30%), Positives = 512/1031 (49%), Gaps = 54/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +                 ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108

Query: 130  RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
                  L E  +    L  +T  + G + + FF    Q A          F    L+V  
Sbjct: 109  ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                  ++ R   +       +LP VA      L+ E+  A  VL ++  +  ++   + 
Sbjct: 161  -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +     R    ++   L  A    V+   + +   +V  P+  + +        + 
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D + +
Sbjct: 279  AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
               N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +R
Sbjct: 332  CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN     
Sbjct: 392  REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +      +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LVP+ 
Sbjct: 452  LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP DD
Sbjct: 511  LGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAIKRVYNQTIHLNQIPLDD 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+  RK
Sbjct: 570  ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +
Sbjct: 630  KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP 
Sbjct: 690  DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844
             F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  +++KG
Sbjct: 750  AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R QL  
Sbjct: 810  IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L++  +         +    ++          K   E+ +      R E E++ LG Y 
Sbjct: 870  GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918

Query: 964  SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            SGHP + +K   L K            +   + +L   V + +  +T+KG ++ +V   +
Sbjct: 919  SGHPTEEFKKTRLAKQTQL----VHELVENQSTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974

Query: 1023 PAKEYEANFFP 1033
                     FP
Sbjct: 975  TTGSISLTLFP 985


>gi|257083953|ref|ZP_05578314.1| DNA polymerase III alpha subunit [Enterococcus faecalis Fly1]
 gi|256991983|gb|EEU79285.1| DNA polymerase III alpha subunit [Enterococcus faecalis Fly1]
          Length = 1109

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 318/1031 (30%), Positives = 511/1031 (49%), Gaps = 54/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +                 ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108

Query: 130  RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
                  L E  +    L  +T  + G + + FF    Q A          F    L+V  
Sbjct: 109  ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                  ++ R   +       +LP VA      L+ E+  A  VL ++  +  ++   + 
Sbjct: 161  -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +     R    ++   L  A    V+   + +   +V  P+  + +        + 
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPANQT 278

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D + +
Sbjct: 279  AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
               N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +R
Sbjct: 332  CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN     
Sbjct: 392  REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +      +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LVP+ 
Sbjct: 452  LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP +D
Sbjct: 511  PGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIPLND 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+  RK
Sbjct: 570  ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +
Sbjct: 630  KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP 
Sbjct: 690  DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844
             F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  +++KG
Sbjct: 750  AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R QL  
Sbjct: 810  IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L++  +         +    ++          K   E+ +      R E E++ LG Y 
Sbjct: 870  GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918

Query: 964  SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            SGHP + +K   L K            +     +L   V + +  +T+KG ++ +V   +
Sbjct: 919  SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974

Query: 1023 PAKEYEANFFP 1033
                     FP
Sbjct: 975  TTGSISLTLFP 985


>gi|161507446|ref|YP_001577400.1| DNA polymerase III alpha subunit [Lactobacillus helveticus DPC 4571]
 gi|160348435|gb|ABX27109.1| DNA polymerase III alpha subunit [Lactobacillus helveticus DPC 4571]
          Length = 1035

 Score =  569 bits (1466), Expect = e-159,   Method: Composition-based stats.
 Identities = 330/1024 (32%), Positives = 536/1024 (52%), Gaps = 44/1024 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    ++++++        A+ + D N  +  + F + A  AGI+P++G 
Sbjct: 6    LQNLSSFTLLDSPTKVSDLIETAKKRGYQAVGLADVNVTYGLVNFYELAKKAGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-YLLDQGKQSVRIC 132
            QL ++          G         ++    T  GY  L+ L S + +L D G+ +  + 
Sbjct: 66   QLRLN----------GLVDSTQKYDLIAFAKTNAGYHNLLRLSSAINFLTDNGQNNNVLT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +   + L+++   +   +   F  N  Q+    +   K+L  D LY+ +  +   
Sbjct: 116  LKDLSKYLADLLLIVPANTKSELLSLFETNK-QLGSDLIRDLKELTSD-LYLGVYANPSM 173

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPD 251
             +     V  L+   +L L+AT +S +L+  D      L A+A    +       +    
Sbjct: 174  -QNYIDYVRSLSKQFDLLLLATEDSEYLNPHDQFLQKTLRAIATGDKIQDALPLAKQEGS 232

Query: 252  HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            HYL    +++  +   DL +A+ NT ++A +C+  +    P+LP++ +K+        E 
Sbjct: 233  HYLVEAEQLLQRYHEFDLDDAVNNTWQVAEKCNAEVVFQKPVLPKYHQKKFV----TSEE 288

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L   A  GL+ R  Q          +Y++RL++EL VI +M F  YFLIV D I +  +
Sbjct: 289  YLHYLAQTGLQQRFGQ-----NKIPAEYQKRLNYELRVINQMGFDDYFLIVWDVINYCHR 343

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS  GS+ +Y+L IT++DP+ ++LLFERFLNP R  MPD D+D    +RD 
Sbjct: 344  VQITTGPGRGSACGSLVSYSLRITEVDPIEYNLLFERFLNPSRHEMPDIDLDIPDVQRDT 403

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +   ++ +    IP         
Sbjct: 404  VIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEIKKWADAIPYSKGKITLK 463

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +A       R    A P    L + +  LEGL RH S HAAG+VI D  ++ +  +    
Sbjct: 464  EAYQQSRELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDNSIAGISGLQ-AG 522

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
               +PVTQ   K++E  GL+K DFLGL+ LT+L   L+ + Q+G+K+D + IP +D +T 
Sbjct: 523  PLGIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILNLIRQQGIKIDPNQIPLNDAQTL 582

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T  +FQ ES G+RQ L  + PD  ED++A+ +LYRPGP+ NI  +  RKNG+E
Sbjct: 583  QLFQQGKTDAVFQFESGGIRQVLRKLHPDNFEDLVAVNALYRPGPMQNIDAFVRRKNGQE 642

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ ++++K
Sbjct: 643  AVRYPDPSLKKILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQEK 702

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FI+G  K G +K +A  +++ + +FA+YGFN+SHA AY  I+Y  A++K HYP  F  
Sbjct: 703  GKFIAGTIKQGHTKAVAERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPAAFYT 762

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +        K + +   A++ NI+I+PP +N   +++ + + +I   L AIKG+    
Sbjct: 763  AMLN--SAAGAKAQDYIMQAQEANIKILPPDINHSSLEYALKNKQILVGLKAIKGLRVDF 820

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            AR I  A   KP+ SL DF  R+D K L    +++L+ AGA D    +R +LL + D I 
Sbjct: 821  AREI--ADNTKPYKSLNDFLRRIDPKFLQADAIKALIMAGAFDGLEKNRNELLVNCDEII 878

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               Q   +N      ++             L+       + +   E++VLGF  +  PL 
Sbjct: 879  ANVQLTGQN-----ISL-----SEILGNAPLKPADEPTGAEKAAMEEKVLGFSTTTSPLI 928

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K   +   +      G  +     ++  +Q +T+ G  + + +F++ + E E 
Sbjct: 929  AVQKFAQKFNSRPLNQFQLNESGVGV---GKLIRFKQIRTKNGKNMAFASFADTSGEQEV 985

Query: 1030 NFFP 1033
              FP
Sbjct: 986  VIFP 989


>gi|162146502|ref|YP_001600961.1| putative error-prone DNA polymerase [Gluconacetobacter diazotrophicus
            PAl 5]
 gi|161785077|emb|CAP54621.1| putative Error-prone DNA polymerase [Gluconacetobacter diazotrophicus
            PAl 5]
          Length = 1069

 Score =  569 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 270/1044 (25%), Positives = 449/1044 (43%), Gaps = 76/1044 (7%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E  PS+  LQ  ++YS L GA   + +  +  A    A+ I D + +   ++  + A   
Sbjct: 19   ESLPSYAELQAVTNYSFLRGASHPDELFARARALGHAALGIVDHDGVAGIVQSWKAAEKH 78

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G++ ++GC+L +                   P ++   +    + RL  L++        
Sbjct: 79   GVRLVVGCRLVLRDG----------------PPLLAYPTDRAAWGRLCRLLTASKRKAAD 122

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR-LLTFKKLFGDRLYV 184
              +  +  + L    T+GLI++              +    A  R L   + L GDR Y+
Sbjct: 123  GTAPGLRRADL-HRATDGLILI-----------LLPDDPDAALARDLDWLRALCGDRGYL 170

Query: 185  NLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L  R R  D  R  ++ ++A    +  V T + L+         DVL  +     + + 
Sbjct: 171  ALTLRRRPGDAVRLHRLAEMARAAGVADVVTGDVLYHEPARAMLQDVLTCIRTGCTIDEL 230

Query: 244  DRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             + R    D +LK+ +EM  +++  P AL  T EIA RC+F         P       DD
Sbjct: 231  GQGREAYADRHLKSPAEMAVLYAAHPAALARTREIAARCTFSPADLRYQYPEES----DD 286

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +  ++ L   A A L  R   GA          R+++++EL +I  + ++ YFL V  
Sbjct: 287  PSETPQDRLERLARAALRDRYPAGA------PDPVRRQVEYELGLIRDLHYAPYFLTVHT 340

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             ++ A+   I    GRGS A S   + L IT+IDP   +LLFERF++ +R   PD D+DF
Sbjct: 341  IVRQARSQGIL-CQGRGSAANSAVCFVLGITEIDPASSNLLFERFVSAERQEPPDIDVDF 399

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+EVI+++  +YG +R A   T    +A+ ALRDVG+ L +P    D    L  + 
Sbjct: 400  ESERREEVIQWIYRRYGRDRAALCATTMRYRARGALRDVGKVLGLP---ADVTGLLSTHL 456

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
             A      A  + +R     L +  +   L+++ +L G  R   TH  G V+    L  L
Sbjct: 457  GALSFDEDAFHERARELGLNLRNRRLLLTLQLAGELIGFPRQLGTHPGGFVLTRDRLDDL 516

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLI 601
            VP+      D  +  ++   I+    +K D LGL  L  ++++ D L     K   LS I
Sbjct: 517  VPIQPAAMDDRQIIVWDKDDIDTLRFMKVDVLGLGMLGCMRRAFDMLEDHYGKRLTLSGI 576

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P  D +TY +++   T+G FQ+ES      L  M+P    D++  V++ RPGPI   +V+
Sbjct: 577  PPGDADTYAMISRADTIGTFQIESRAQMAMLPRMKPREFYDLVIQVAIVRPGPIQGDMVH 636

Query: 662  NNRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
               +   ++  +    P +  +L +T GV ++QEQ MQIA   +G++  EAD LRRAMG 
Sbjct: 637  PYLQRRADRSLVDYPSPELRDILHKTLGVPLFQEQAMQIAIRCAGFTPGEADALRRAMGT 696

Query: 720  KI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
                  +   ++R I G       +  A  IF  L  F  YGF +SHAA++A+I+Y ++W
Sbjct: 697  FRGHGTVTYFRDRLIDGMMARHYPRDFAERIFRQLEGFGSYGFPESHAASFALIAYASSW 756

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----N 833
            MK HYP  F AA +  +     +  +  +DAR   + + P  VN    D  +        
Sbjct: 757  MKCHYPDVFCAALLNSQPMGFYRPAQIVRDARNHGVTVHPVCVNASRWDCTLERAPGRST 816

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +   L  +KG+  T A  ++ +    P+D +ED   R     L    LE L  A A   
Sbjct: 817  AVRLGLRMVKGLSNTDAARLVASRM-PPYDGIEDVWRR---SGLGPDALECLAQADAFHA 872

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL-----EKFSVENS 948
             G  R   L  +  +                 +FA      +  +          +    
Sbjct: 873  LGRDRRAALWDIKGL-----------AESPLPLFAAADRGLNRPLPECVEPSVPLTAMTE 921

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
                  +    G     HP+   +  LR  G+    +  A   G  + +  +V+ +Q+  
Sbjct: 922  GQEVVEDYHATGLTLRRHPVAFLRDGLRDRGMIACADLRALRDGRRVVVPGLVLMRQRPG 981

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            T +G  + ++T  +         +
Sbjct: 982  TAQG--VLFMTIEDETGMANLVLW 1003


>gi|315173327|gb|EFU17344.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX1346]
          Length = 1109

 Score =  569 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 319/1031 (30%), Positives = 511/1031 (49%), Gaps = 54/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +                 ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108

Query: 130  RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
                  L E  +    L  +T  + G + + FF    Q A          F    L+V  
Sbjct: 109  ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                  ++ R   +       +LP VA      L+ E+  A  VL ++  +  ++   + 
Sbjct: 161  -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +     R    ++   L  A    V+   + +   +V  P+  + +        + 
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D + +
Sbjct: 279  AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
               N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +R
Sbjct: 332  CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN     
Sbjct: 392  REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +      +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LVP+ 
Sbjct: 452  LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP +D
Sbjct: 511  PGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIPLND 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+  RK
Sbjct: 570  ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +
Sbjct: 630  KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F++GA + G  K  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP 
Sbjct: 690  DEERNHFVNGALQQGYPKETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844
             F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  +++KG
Sbjct: 750  AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R QL  
Sbjct: 810  IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L++  +         +    ++          K   E+ +      R E E++ LG Y 
Sbjct: 870  GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918

Query: 964  SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            SGHP + +K   L K            +     +L   V + +  +T+KG ++ +V   +
Sbjct: 919  SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974

Query: 1023 PAKEYEANFFP 1033
                     FP
Sbjct: 975  TTGSISLTLFP 985


>gi|300860057|ref|ZP_07106145.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TUSoD Ef11]
 gi|300850875|gb|EFK78624.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TUSoD Ef11]
 gi|315144680|gb|EFT88696.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX2141]
 gi|315160663|gb|EFU04680.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0645]
          Length = 1109

 Score =  569 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 320/1031 (31%), Positives = 511/1031 (49%), Gaps = 54/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +                 ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108

Query: 130  RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
                  L E  +    L  +T  + G + + FF    Q A          F    L+V  
Sbjct: 109  ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                  ++ R   +       +LP VA      L+ E+  A  VL ++  +  ++   + 
Sbjct: 161  -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +     R    ++   L  A    V+   + +   +V  P+  + +        + 
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D + +
Sbjct: 279  AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
               N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +R
Sbjct: 332  CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN     
Sbjct: 392  REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +      +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LVP+ 
Sbjct: 452  LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP DD
Sbjct: 511  LGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIPLDD 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+  RK
Sbjct: 570  ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +
Sbjct: 630  KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F++GA + G  K  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP 
Sbjct: 690  DEERNHFVNGALQQGYPKETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844
             F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  +++KG
Sbjct: 750  AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R QL  
Sbjct: 810  IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L++  +         +    ++          K   E+ +      R E E++ LG Y 
Sbjct: 870  GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918

Query: 964  SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            SGHP + +K   L K            +     +L   V + +  +T+KG ++ +V   +
Sbjct: 919  SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974

Query: 1023 PAKEYEANFFP 1033
                     FP
Sbjct: 975  TTGSISLTLFP 985


>gi|257077930|ref|ZP_05572291.1| DNA polymerase III alpha subunit [Enterococcus faecalis JH1]
 gi|256985960|gb|EEU73262.1| DNA polymerase III alpha subunit [Enterococcus faecalis JH1]
          Length = 1109

 Score =  569 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 319/1031 (30%), Positives = 511/1031 (49%), Gaps = 54/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +                 ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108

Query: 130  RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
                  L E  +    L  +T  + G + + FF    Q A          F    L+V  
Sbjct: 109  ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                  ++ R   +       +LP VA      L+ E+  A  VL ++  +  ++   + 
Sbjct: 161  -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +     R    ++   L  A    V+   + +   +V  P+  + +        + 
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D + +
Sbjct: 279  AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
               N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +R
Sbjct: 332  CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN     
Sbjct: 392  REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +      +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LVP+ 
Sbjct: 452  LEES-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP DD
Sbjct: 511  LGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIPLDD 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+  RK
Sbjct: 570  ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +
Sbjct: 630  KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP 
Sbjct: 690  DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844
             F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  +++KG
Sbjct: 750  AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R QL  
Sbjct: 810  IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L++  +         +    ++          K   E+ +      R E E++ LG Y 
Sbjct: 870  GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918

Query: 964  SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            SGHP + +K   L K            +     +L   V + +  +T+KG ++ +V   +
Sbjct: 919  SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974

Query: 1023 PAKEYEANFFP 1033
                     FP
Sbjct: 975  TTGSISLTLFP 985


>gi|83748142|ref|ZP_00945170.1| DNA polymerase III alpha subunit [Ralstonia solanacearum UW551]
 gi|207739146|ref|YP_002257539.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
            IPO1609]
 gi|83725224|gb|EAP72374.1| DNA polymerase III alpha subunit [Ralstonia solanacearum UW551]
 gi|206592519|emb|CAQ59425.1| dna polymerase III (alpha chain) protein [Ralstonia solanacearum
            IPO1609]
          Length = 1081

 Score =  569 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 264/1073 (24%), Positives = 436/1073 (40%), Gaps = 111/1073 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA   + ++ +  A    A+A+TD  ++   +     A  AG++
Sbjct: 18   PDYAELHCISNFTFLTGASHPHELVARAKALGYRALALTDECSVAGTVRAHVAAKEAGLK 77

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                     +VLL    +GY  L E +++  L    K  
Sbjct: 78   LIVGSRFTVRDAQGEPWL-----------RLVLLAQDIDGYGNLCECITQARLA-APKGD 125

Query: 129  VRICLSWLQEIGTEGLIMLTG---GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL--Y 183
             R+    L     +GL  L G     +  +         Q    + L  +++FGDRL   
Sbjct: 126  YRLLADDLAA-PADGLAHLRGMPHCLAILLPDY--DPDPQRLRAQALWCRQVFGDRLSMA 182

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            + L      DR+R   V  ++   ++PLVAT +    S +    HDVL A+  S  +++ 
Sbjct: 183  LELPLRHADDRHR-GTVAAVSEQADVPLVATGDVAMHSRQRKPLHDVLTAIRLSRPIAEC 241

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLP---EALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                             ++ F         L  +VE+A  C F L       P  +  E 
Sbjct: 242  GLELAPSAEQAMRTRMQLAFFYQGERGAPLLRRSVELASLCDFSLDEIEYEYPHEVVPEG 301

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                      L  + +AG   R  +            R ++  EL +IA +++  +FL V
Sbjct: 302  ----LTPAAYLHAEVMAGTARRYGK------AIPAKVRAQIAEELALIAELRYEPFFLTV 351

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +++A+  +I    GRGS A S   Y L IT++DP   + LF RFL+  R   PD D+
Sbjct: 352  YDVVRFARSRDIL-CQGRGSAANSAVCYCLGITEVDPESGNTLFARFLSRARNEPPDIDV 410

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR+EVI+Y+  KYG  R A      + + ++ALRDVGRAL +    ++++ K   
Sbjct: 411  DFEHQRREEVIQYIYGKYGLTRTALAAALITYRTRSALRDVGRALGIDLGVIEQVAKAQA 470

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                      A A  +  +      P V R   +  +L G  RH S H  G VI    LS
Sbjct: 471  WWDG----QHAFAQHAGQQGLDPESPLVQRWAGLVGQLRGFPRHLSQHVGGFVIAQGKLS 526

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-------LAQRG 593
            +LVP+      D  V Q++   +E   L+K D L L  LT ++++LD         A+ G
Sbjct: 527  RLVPIENAAMRDRRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDMLDALPGRRARYG 586

Query: 594  VKVDLSLIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                L++      D +TY +++   T+G+FQ+ES   +  L  ++P    D++  V++ R
Sbjct: 587  ASDKLAMQHLPDEDRDTYDMISRAETIGVFQIESRAQQSMLPRLRPRTYYDLVIQVAIVR 646

Query: 652  PGPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            PGPI   +V+   +  +       + +    P +  +L+ T GV I+QEQVM+IA    G
Sbjct: 647  PGPIQGGMVHPYLQRREAMRNGNSDCVTYPGPEVRAVLERTLGVPIFQEQVMEIAMKAGG 706

Query: 705  YSLSEADVLRRAM--GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            ++  EAD LRR M   K+     + Q+                   +   +  FA+YGF 
Sbjct: 707  FTADEADRLRRDMAAWKRKGNLTEHQERLMQEMVEVRHYDPAFVEALCRQMEGFAEYGFP 766

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            +SHAA +A ++Y ++++K H P  F AA +  +        +  Q+AR+  ++++P  V 
Sbjct: 767  ESHAAGFAKLAYVSSYLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRSRVRVLPADVT 826

Query: 823  TPCVDFKVGD--------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                D  + +          I   L+ I+G+    A  I+ A A  PF S+ED   R   
Sbjct: 827  VSAWDSTLHERPHGAGGQPDIRLGLSRIRGMRPPAAERIVAARAQAPFASVEDLAHRA-- 884

Query: 875  KKLNRRVLESLVFAGALDCFG--------------YSRMQLLQSLDNIQKYAQWVEKNRT 920
                           ALD                   R Q L     +Q+  Q       
Sbjct: 885  ---------------ALDRHDLSVLAAANALLPLAGHRRQALWQTLALQEPGQDHA---- 925

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                 +    +   +    L      +       +   LG     HPL + +P L +M  
Sbjct: 926  -----LLRQARPVEAPLALL----APSLGEEVVADYGSLGLSLQSHPLSLLRPRLERMRF 976

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                       G   R   +V  +Q+  T KG+   +V+  +         +P
Sbjct: 977  VTAATLAGYRNGQLARACGIVTVRQRPGTAKGT--IFVSIEDETGVVNVVLWP 1027


>gi|291301059|ref|YP_003512337.1| DNA polymerase III subunit alpha [Stackebrandtia nassauensis DSM
            44728]
 gi|290570279|gb|ADD43244.1| DNA polymerase III, alpha subunit [Stackebrandtia nassauensis DSM
            44728]
          Length = 1073

 Score =  569 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 285/1047 (27%), Positives = 459/1047 (43%), Gaps = 82/1047 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS++S L+GA S  +++ +        +AITD + L+ A+ F+Q A   G+  +
Sbjct: 30   YAELHAHSNFSFLDGASSPEDLVAEALRLGLSGLAITDHDGLYGAVRFAQAAKGTGLATV 89

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L I +        +   P P+   +++L   AEGY +L   +   +L    K    
Sbjct: 90   YGAELSIGLTGE-----RAGVPDPSGTHLLVLARGAEGYAKLSAAIGNAHLAGGQKGLPD 144

Query: 131  I-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
               L  +       +++LTG   GP+ RA        A   L    +LFG D +YV L  
Sbjct: 145  YGSLEGVAARLRGHVVVLTGCRKGPVRRALDAGGVDAARVELERLVELFGRDGVYVELTD 204

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H+ + D  R   +  LA    L +VATNN  +     +    V  AV  +  + + D   
Sbjct: 205  HQAFTDGDRNEALADLASELGLSVVATNNVHYARSSRHRLSQVAAAVRANMPLDELDGWL 264

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                   L +  EMV  F+    A+ +++ +AR  +F L + AP LP F      D    
Sbjct: 265  PAAPTARLCSPDEMVERFAPFGGAVASSLRLARELAFDLDLVAPALPPFPVPAGHD---- 320

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E++ LR+   AG   R             D  ++LD EL+VI R+ F+GYFLIV D + +
Sbjct: 321  EDSWLRHLVQAGAAERYGPLG-----SRSDVVRQLDHELDVIKRLGFAGYFLIVHDIVDY 375

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             ++  I V  GRGS A SV  + L IT  DP+ F LLFERFL+P R   PD D+D    R
Sbjct: 376  CRREGILV-QGRGSAANSVVCFTLGITAADPIAFKLLFERFLSPAREGPPDIDLDIEARR 434

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+ VI+YV + YG    AQ+    + + ++A+RD   AL     QVD      P      
Sbjct: 435  REAVIQYVYDTYGRTYAAQVANVITYRRRSAIRDSAAALGYSPGQVDAWIAASPRRGGPA 494

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            ++                      +   + +L G  RH   H+ G+VI DRP+  +VP+ 
Sbjct: 495  LT-----------------ELPADVGTYAGQLLGAPRHLGIHSGGMVICDRPIIDVVPVE 537

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDD 605
                    V Q++      AGL+K D LGL  LT L+++ D         VDL+ +  DD
Sbjct: 538  HARMDKRTVLQWDKDDCADAGLVKIDLLGLGMLTALREARDVANAHYDVPVDLAALTPDD 597

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNN 663
             E Y ++     +G FQ+ES    Q    ++P  + D+   ++L RPGPI    +  Y  
Sbjct: 598  AEVYAMVHKGDAIGTFQIESRAQLQLAPRLRPANLHDLAVQIALVRPGPIQGGAVHPYLR 657

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            R++G E +V  H L  P L+++ GV ++QEQ+MQ+A    G+S ++AD LR+AM  K+  
Sbjct: 658  RRDGLEPVVYPHRLAQPALEKSLGVPLFQEQMMQLAVDCGGFSPADADELRQAMGAKRSA 717

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E M + K+RF +GA+ N I      +++  +  F+ YGF +SHA ++A I+Y + ++K +
Sbjct: 718  ERMHRLKDRFYAGAAANDIPHATIDDLWSRMEAFSGYGFPESHAISFAYIAYASCYLKRY 777

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--------- 833
            YP  FL   +  +      I     DAR+  ++I P  +N       +  +         
Sbjct: 778  YPAAFLTGLIRAQPMGFYSINTLIADARRHGVRIHPVHINHSHATTTLDGHGTPAPADAP 837

Query: 834  ---------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
                      +   L  + G+  T A  I      +P+ S+ D   R     L    LE+
Sbjct: 838  ARQWGSGGPAVRLGLNQVHGISDTVAERIA---VGQPYTSITDLARRA---GLTETHLEN 891

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  AGAL   G +R Q L                          H+    + ++T     
Sbjct: 892  LATAGALTALGPTRRQALWMAAPAAANT----------------HDTIDGTIQLTAPMLP 935

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +++     +    G     HP++  +  L        ++         + +  +V  +
Sbjct: 936  GMSNAELTAADLTATGSSVDSHPIEHIRHQLDAHDATPIDQLATLPDRTRVVVGGIVTHR 995

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            Q  +T  G  I ++   +   +     
Sbjct: 996  QAPETAGG--ILFINLEDETGQANIVC 1020


>gi|256761801|ref|ZP_05502381.1| DNA polymerase III alpha subunit [Enterococcus faecalis T3]
 gi|256957134|ref|ZP_05561305.1| DNA polymerase III alpha subunit [Enterococcus faecalis DS5]
 gi|257086401|ref|ZP_05580762.1| DNA polymerase III alpha subunit [Enterococcus faecalis D6]
 gi|294779297|ref|ZP_06744701.1| DNA polymerase III, alpha subunit [Enterococcus faecalis PC1.1]
 gi|307269669|ref|ZP_07551002.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX4248]
 gi|256683052|gb|EEU22747.1| DNA polymerase III alpha subunit [Enterococcus faecalis T3]
 gi|256947630|gb|EEU64262.1| DNA polymerase III alpha subunit [Enterococcus faecalis DS5]
 gi|256994431|gb|EEU81733.1| DNA polymerase III alpha subunit [Enterococcus faecalis D6]
 gi|294453664|gb|EFG22062.1| DNA polymerase III, alpha subunit [Enterococcus faecalis PC1.1]
 gi|306513997|gb|EFM82588.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX4248]
 gi|315027021|gb|EFT38953.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX2137]
 gi|315031757|gb|EFT43689.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0017]
 gi|315034170|gb|EFT46102.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0027]
 gi|315171981|gb|EFU15998.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX1342]
 gi|323480286|gb|ADX79725.1| DNA polymerase III subunit alpha [Enterococcus faecalis 62]
          Length = 1109

 Score =  569 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 319/1031 (30%), Positives = 511/1031 (49%), Gaps = 54/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +                 ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108

Query: 130  RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
                  L E  +    L  +T  + G + + FF    Q A          F    L+V  
Sbjct: 109  ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                  ++ R   +       +LP VA      L+ E+  A  VL ++  +  ++   + 
Sbjct: 161  -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +     R    ++   L  A    V+   + +   +V  P+  + +        + 
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D + +
Sbjct: 279  AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
               N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +R
Sbjct: 332  CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN     
Sbjct: 392  REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +      +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LVP+ 
Sbjct: 452  LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP DD
Sbjct: 511  LGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIPLDD 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+  RK
Sbjct: 570  ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +
Sbjct: 630  KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP 
Sbjct: 690  DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844
             F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  +++KG
Sbjct: 750  AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R QL  
Sbjct: 810  IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L++  +         +    ++          K   E+ +      R E E++ LG Y 
Sbjct: 870  GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918

Query: 964  SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            SGHP + +K   L K            +     +L   V + +  +T+KG ++ +V   +
Sbjct: 919  SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974

Query: 1023 PAKEYEANFFP 1033
                     FP
Sbjct: 975  TTGSISLTLFP 985


>gi|257415661|ref|ZP_05592655.1| DNA polymerase III alpha subunit [Enterococcus faecalis AR01/DG]
 gi|257157489|gb|EEU87449.1| DNA polymerase III alpha subunit [Enterococcus faecalis ARO1/DG]
 gi|315147993|gb|EFT92009.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX4244]
          Length = 1109

 Score =  569 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 320/1031 (31%), Positives = 511/1031 (49%), Gaps = 54/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +                 ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108

Query: 130  RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
                  L E  +    L  +T  + G + + FF    Q A          F    L+V  
Sbjct: 109  ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                  ++ R   +       +LP VA      L+ E+  A  VL ++  +  ++   + 
Sbjct: 161  -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +     R    ++   L  A    V+   + +   +V  P+  + +        + 
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D + +
Sbjct: 279  AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
               N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +R
Sbjct: 332  CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN     
Sbjct: 392  REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +      +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LVP+ 
Sbjct: 452  LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP DD
Sbjct: 511  PGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLNQIPLDD 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+  RK
Sbjct: 570  ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +
Sbjct: 630  KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F++GA + G  K  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP 
Sbjct: 690  DEERNHFVNGALQQGYPKETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844
             F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  +++KG
Sbjct: 750  AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R QL  
Sbjct: 810  IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L++  +         +    ++          K   E+ +      R E E++ LG Y 
Sbjct: 870  GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918

Query: 964  SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            SGHP + +K   L K            +     +L   V + +  +T+KG ++ +V   +
Sbjct: 919  SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974

Query: 1023 PAKEYEANFFP 1033
                     FP
Sbjct: 975  TTGSISLTLFP 985


>gi|209543499|ref|YP_002275728.1| DNA polymerase III subunit alpha [Gluconacetobacter diazotrophicus
            PAl 5]
 gi|209531176|gb|ACI51113.1| DNA polymerase III, alpha subunit [Gluconacetobacter diazotrophicus
            PAl 5]
          Length = 1049

 Score =  569 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 269/1041 (25%), Positives = 448/1041 (43%), Gaps = 76/1041 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PS+  LQ  ++YS L GA   + +  +  A    A+ I D + +   ++  + A   G++
Sbjct: 2    PSYAELQAVTNYSFLRGASHPDELFARARALGHAALGIVDHDGVAGIVQSWKAAEKHGVR 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++GC+L +                   P ++   +    + RL  L++          +
Sbjct: 62   LVVGCRLVLRDG----------------PPLLAYPTDRAAWGRLCRLLTASKRKAADGTA 105

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR-LLTFKKLFGDRLYVNLQ 187
              +  + L    T+GLI++              +    A  R L   + L GDR Y+ L 
Sbjct: 106  PGLRRADL-HRATDGLILI-----------LLPDDPDAALARDLDWLRALCGDRGYLALT 153

Query: 188  -RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R R  D  R  ++ ++A    +  V T + L+         DVL  +     + +  + 
Sbjct: 154  LRRRPGDAVRLHRLAEMARAAGVADVVTGDVLYHEPARAMLQDVLTCIRTGCTIDELGQG 213

Query: 247  RVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R    D +LK+ +EM  +++  P AL  T EIA RC+F         P       DD  +
Sbjct: 214  REAYADRHLKSPAEMAVLYAAHPAALARTREIAARCTFSPADLRYQYPEES----DDPSE 269

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              ++ L   A A L  R   GA          R+++++EL +I  + ++ YFL V   ++
Sbjct: 270  TPQDRLERLARAALRDRYPAGA------PDPVRRQVEYELGLIRDLHYAPYFLTVHTIVR 323

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
             A+   I    GRGS A S   + L IT+IDP   +LLFERF++ +R   PD D+DF  +
Sbjct: 324  QARSQGIL-CQGRGSAANSAVCFVLGITEIDPASSNLLFERFVSAERQEPPDIDVDFESE 382

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+++  +YG +R A   T    +A+ ALRDVG+ L +P    D    L  +  A 
Sbjct: 383  RREEVIQWIYRRYGRDRAALCATTMRYRARGALRDVGKVLGLP---ADVTGLLSTHLGAL 439

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                 A  + +R     L +  +   L+++ +L G  R   TH  G V+    L  LVP+
Sbjct: 440  SFDEDAFHERARELGLNLRNRRLLLTLQLAGELIGFPRQLGTHPGGFVLTRDRLDDLVPI 499

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFD 604
                  D  +  ++   I+    +K D LGL  L  ++++ D L     K   LS IP  
Sbjct: 500  QPAAMDDRQIIVWDKDDIDTLRFMKVDVLGLGMLGCMRRAFDMLEDHYGKRLTLSGIPPG 559

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY +++   T+G FQ+ES      L  M+P    D++  V++ RPGPI   +V+   
Sbjct: 560  DADTYAMISRADTIGTFQIESRAQMAMLPRMKPREFYDLVIQVAIVRPGPIQGDMVHPYL 619

Query: 665  KNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI- 721
            +   ++  +    P +  +L +T GV ++QEQ MQIA   +G++  EAD LRRAMG    
Sbjct: 620  QRRADRSLVDYPSPELRDILHKTLGVPLFQEQAMQIAIRCAGFTPGEADALRRAMGTFRG 679

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               +   ++R I G       +  A  IF  L  F  YGF +SHAA++A+I+Y ++WMK 
Sbjct: 680  HGTVTYFRDRLIDGMMARHYPRDFAERIFRQLEGFGSYGFPESHAASFALIAYASSWMKC 739

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----NRIY 836
            HYP  F AA +  +     +  +  +DAR   + + P  VN    D  +         + 
Sbjct: 740  HYPDVFCAALLNSQPMGFYRPAQIVRDARNHGVTVHPVCVNASRWDCTLERAPGRSTAVR 799

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  +KG+  T A  ++ +    P+D +ED   R     L    LE L  A A    G 
Sbjct: 800  LGLRMVKGLSNTDAARLVASRM-PPYDGIEDVWRR---SGLGPDALECLAQADAFHALGR 855

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL-----EKFSVENSSVR 951
             R   L  +  +                 +FA      +  +          +       
Sbjct: 856  DRRAALWDIKGL-----------AESPLPLFAAADRGLNRPLPECVEPSVPLTAMTEGQE 904

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +    G     HP+   +  LR  G+    +  A   G  + +  +V+ +Q+  T +
Sbjct: 905  VVEDYHATGLTLRRHPVAFLRDGLRDRGMIACADLRALRDGRRVVVPGLVLMRQRPGTAQ 964

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G  + ++T  +         +
Sbjct: 965  G--VLFMTIEDETGMANLVLW 983


>gi|256960227|ref|ZP_05564398.1| DNA polymerase III alpha subunit [Enterococcus faecalis Merz96]
 gi|293382589|ref|ZP_06628522.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|293387817|ref|ZP_06632359.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|312906805|ref|ZP_07765802.1| putative DNA polymerase III DnaE [Enterococcus faecalis DAPTO 512]
 gi|312978940|ref|ZP_07790666.1| putative DNA polymerase III DnaE [Enterococcus faecalis DAPTO 516]
 gi|256950723|gb|EEU67355.1| DNA polymerase III alpha subunit [Enterococcus faecalis Merz96]
 gi|291080032|gb|EFE17396.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|291082792|gb|EFE19755.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|310627059|gb|EFQ10342.1| putative DNA polymerase III DnaE [Enterococcus faecalis DAPTO 512]
 gi|311288377|gb|EFQ66933.1| putative DNA polymerase III DnaE [Enterococcus faecalis DAPTO 516]
          Length = 1109

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 319/1031 (30%), Positives = 512/1031 (49%), Gaps = 54/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +                 ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108

Query: 130  RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
                  L E  +    L  +T  + G + + FF    Q A          F    L+V  
Sbjct: 109  ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                  ++ R   +       +LP VA      L+ E+  A  VL ++  +  ++   + 
Sbjct: 161  -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +     R    ++   L  A    V+   + +   +V  P+  + +        + 
Sbjct: 220  -PEIEGLDYLREAETTMEQMLQIAGSEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR+  +  L  R+           + Y++RL+ EL +I  M F  YFLIV D + +
Sbjct: 279  AGSYLRSLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
               N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +R
Sbjct: 332  CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN     
Sbjct: 392  REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +      +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LVP+ 
Sbjct: 452  LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP DD
Sbjct: 511  PGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIPLDD 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+  RK
Sbjct: 570  ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +
Sbjct: 630  KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP 
Sbjct: 690  DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844
             F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  +++KG
Sbjct: 750  AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R QL  
Sbjct: 810  IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L++  +         +    ++          K   E+ +      R E E++ LG Y 
Sbjct: 870  GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918

Query: 964  SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            SGHP + +K   L K            +     +L   V + +  +T+KG ++ +V   +
Sbjct: 919  SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974

Query: 1023 PAKEYEANFFP 1033
                     FP
Sbjct: 975  TTGSISLTLFP 985


>gi|255971496|ref|ZP_05422082.1| DNA polymerase III alpha subunit [Enterococcus faecalis T1]
 gi|255974111|ref|ZP_05424697.1| DNA polymerase III alpha subunit [Enterococcus faecalis T2]
 gi|256617966|ref|ZP_05474812.1| DNA polymerase III alpha subunit [Enterococcus faecalis ATCC 4200]
 gi|257089451|ref|ZP_05583812.1| DNA polymerase III alpha subunit [Enterococcus faecalis CH188]
 gi|307275526|ref|ZP_07556668.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX2134]
 gi|307278911|ref|ZP_07559971.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0860]
 gi|312904606|ref|ZP_07763764.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0635]
 gi|312952684|ref|ZP_07771546.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0102]
 gi|21314374|gb|AAM46913.1|AF508326_1 DNA polymerase III E [Enterococcus faecalis]
 gi|255962514|gb|EET94990.1| DNA polymerase III alpha subunit [Enterococcus faecalis T1]
 gi|255966983|gb|EET97605.1| DNA polymerase III alpha subunit [Enterococcus faecalis T2]
 gi|256597493|gb|EEU16669.1| DNA polymerase III alpha subunit [Enterococcus faecalis ATCC 4200]
 gi|256998263|gb|EEU84783.1| DNA polymerase III alpha subunit [Enterococcus faecalis CH188]
 gi|306504393|gb|EFM73603.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0860]
 gi|306507914|gb|EFM77042.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX2134]
 gi|310629200|gb|EFQ12483.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0102]
 gi|310632119|gb|EFQ15402.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0635]
 gi|315153119|gb|EFT97135.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0031]
 gi|315577423|gb|EFU89614.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0630]
          Length = 1109

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 319/1031 (30%), Positives = 512/1031 (49%), Gaps = 54/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +                 ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108

Query: 130  RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
                  L E  +    L  +T  + G + + FF    Q A          F    L+V  
Sbjct: 109  ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                  ++ R   +       +LP VA      L+ E+  A  VL ++  +  ++   + 
Sbjct: 161  -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +     R    ++   L  A    V+   + +   +V  P+  + +        + 
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAGSEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR+  +  L  R+           + Y++RL+ EL +I  M F  YFLIV D + +
Sbjct: 279  AGSYLRSLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
               N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +R
Sbjct: 332  CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN     
Sbjct: 392  REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +      +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LVP+ 
Sbjct: 452  LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP DD
Sbjct: 511  PGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLNQIPLDD 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+  RK
Sbjct: 570  ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +
Sbjct: 630  KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP 
Sbjct: 690  DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844
             F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  +++KG
Sbjct: 750  AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R QL  
Sbjct: 810  IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L++  +         +    ++          K   E+ +      R E E++ LG Y 
Sbjct: 870  GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918

Query: 964  SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            SGHP + +K   L K            +     +L   V + +  +T+KG ++ +V   +
Sbjct: 919  SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974

Query: 1023 PAKEYEANFFP 1033
                     FP
Sbjct: 975  TTGSISLTLFP 985


>gi|29375623|ref|NP_814777.1| DNA polymerase III, alpha subunit [Enterococcus faecalis V583]
 gi|227555152|ref|ZP_03985199.1| DNA polymerase III, alpha subunit [Enterococcus faecalis HH22]
 gi|257418632|ref|ZP_05595626.1| DNA polymerase III alpha subunit [Enterococcus faecalis T11]
 gi|29343084|gb|AAO80847.1| DNA polymerase III, alpha subunit [Enterococcus faecalis V583]
 gi|227175736|gb|EEI56708.1| DNA polymerase III, alpha subunit [Enterococcus faecalis HH22]
 gi|257160460|gb|EEU90420.1| DNA polymerase III alpha subunit [Enterococcus faecalis T11]
 gi|315574296|gb|EFU86487.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0309B]
 gi|315581632|gb|EFU93823.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0309A]
 gi|327534630|gb|AEA93464.1| DNA-directed DNA polymerase III alpha subunit [Enterococcus faecalis
            OG1RF]
          Length = 1109

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 319/1031 (30%), Positives = 511/1031 (49%), Gaps = 54/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +                 ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108

Query: 130  RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
                  L E  +    L  +T  + G + + FF    Q A          F    L+V  
Sbjct: 109  ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                  ++ R   +       +LP VA      L+ E+  A  VL ++  +  ++   + 
Sbjct: 161  -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +     R    ++   L  A    V+   + +   +V  P+  + +        + 
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D + +
Sbjct: 279  AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
               N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +R
Sbjct: 332  CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN     
Sbjct: 392  REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +      +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LVP+ 
Sbjct: 452  LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP DD
Sbjct: 511  PGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLNQIPLDD 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+  RK
Sbjct: 570  ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +
Sbjct: 630  KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP 
Sbjct: 690  DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844
             F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  +++KG
Sbjct: 750  AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R QL  
Sbjct: 810  IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L++  +         +    ++          K   E+ +      R E E++ LG Y 
Sbjct: 870  GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918

Query: 964  SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            SGHP + +K   L K            +     +L   V + +  +T+KG ++ +V   +
Sbjct: 919  SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974

Query: 1023 PAKEYEANFFP 1033
                     FP
Sbjct: 975  TTGSISLTLFP 985


>gi|107023760|ref|YP_622087.1| error-prone DNA polymerase [Burkholderia cenocepacia AU 1054]
 gi|116690846|ref|YP_836469.1| error-prone DNA polymerase [Burkholderia cenocepacia HI2424]
 gi|105893949|gb|ABF77114.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia AU 1054]
 gi|116648935|gb|ABK09576.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424]
          Length = 1071

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 270/1061 (25%), Positives = 452/1061 (42%), Gaps = 72/1061 (6%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +       P +  L   S++S L GA     ++++        IAITD  +L  A     
Sbjct: 1    MVAEFSLLPDYAELFCRSNFSFLHGASHAEELVERAVKLGYRGIAITDECSLAGAPRMHV 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A   G+  +IG   D+   +       G  P P    +VLL    EGY  L EL+S   
Sbjct: 61   AAKEEGLSLVIGSYFDVTPDE----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-R 115

Query: 121  LLDQGKQSVRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             ++  K + ++    L     +   L  +    +  +        + V + ++  F+  F
Sbjct: 116  RMEAPKGTYKLTSRMLSAPPAKFAHLRGMPDCFAILVPTY--PVRADVLDAQVAWFRATF 173

Query: 179  GDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            G+R  V L Q  R  D  +  ++        + LVA  +            DV+ A+   
Sbjct: 174  GERARVGLVQLQRALDGVQRDEIRAAGKRRGVRLVALGDVTMHVRSCKPLQDVMTAIRVG 233

Query: 238  TVV-SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              V           + +L++R  +  +FS    A   T  +   C F L       P  +
Sbjct: 234  MPVAECGYALAPNAEQHLRSRGRIAKLFSAEEIA--ETCAMLDACDFDLDDLKYEYPLEL 291

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                        + L+ +  AG+  R   G        +   +++ +EL +IA++++  +
Sbjct: 292  VPRG----HTPTSYLKQETWAGVARRYWNGV------PEKVAKQIRYELALIAKLEYEPF 341

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V D +++A+  NI    GRGS A SV  Y L IT+++P + ++LFERF++  R   P
Sbjct: 342  FLTVYDIVKYARSQNIL-CQGRGSAANSVVCYCLGITEVNPDQSTMLFERFISEKRGEPP 400

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF   RR+EVI+++  KYG +R A      + + +  LR+ G+AL +    VDR+ 
Sbjct: 401  DIDVDFEHQRREEVIQHIYEKYGKDRAALAAAVSTYRPRGVLRETGKALGVDPMLVDRVA 460

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            K           LQ  A          A P +    E++ +L    RH S H+ G VI  
Sbjct: 461  KGHRWFDGSRDLLQQFAST----GLDPATPIIQTWAELAGRLLNFPRHLSQHSGGFVISR 516

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------A 590
              L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ D        A
Sbjct: 517  GKLTRLVPVENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWRGPA 576

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            + G    L  IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ 
Sbjct: 577  KDGKLFTLKHIPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLRPRNYYDLVVQVSIV 636

Query: 651  RPGPIDNIVVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            RPGPI    V+   K  +        ++      +  +L  T GV I+QEQVMQIA + +
Sbjct: 637  RPGPIQGGAVHPYLKRRRIVAGEEKGEVTYPSDALKEVLVRTLGVPIFQEQVMQIAIVAA 696

Query: 704  GYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            G++  EAD LRRAM     K  ++K +++ ISG  +   ++  A  IFE +  F +YGF 
Sbjct: 697  GFTPGEADDLRRAMAAWKRKGNLEKYQDKIISGMLERNYTREFAEQIFEQIKGFGEYGFP 756

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++  ++++P  V 
Sbjct: 757  ESHAASFAKLAYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHRVKVLPIDVT 816

Query: 823  TPCVDFKVG----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
                +  +              +   L+ ++G+    AR I  A    PFDS++    R 
Sbjct: 817  QSGWEASLEALPDQPPPHGQPAVRLGLSLVRGLSEAAARRIEAARTAGPFDSIDSLARRA 876

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
               +L RR LE+L  A AL      R   L             +        ++ A    
Sbjct: 877  ---QLERRDLEALAAANALATLAGHRRDALW------------QAVAAAPERDLLAAAPI 921

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
              +++         + +     +    G   + HP+ + +P LR   +    E      G
Sbjct: 922  DEAEQ---PALGAPSEADDILADYHTTGLTLNRHPVALLRPALRAQRLSSAAELRDRPDG 978

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               R   +V+++Q   T KG  + ++T  +          P
Sbjct: 979  RLARACGLVIARQMPGTAKG--VMFMTLEDETGCVNVIVRP 1017


>gi|294665463|ref|ZP_06730748.1| DNA polymerase III alpha chain [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 10535]
 gi|292604762|gb|EFF48128.1| DNA polymerase III alpha chain [Xanthomonas fuscans subsp.
            aurantifolii str. ICPB 10535]
          Length = 1065

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 261/1047 (24%), Positives = 456/1047 (43%), Gaps = 87/1047 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + + A G++
Sbjct: 28   PAYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEASRATGVR 87

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                     +VLLV  A GY +L  L++        K +
Sbjct: 88   LIVGSEFTLVDG----------------IRLVLLVENAHGYPQLCGLITTAR-RAASKGA 130

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              +  + +Q    +   ++ G     +   +   +   AE+     +++FG+R ++ ++ 
Sbjct: 131  YHLGRAEVQAQFRD---VVPG-----VFALWLPGAQPQAEQGA-WLQQVFGERAFLAVEL 181

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D   R   +  LA    +  +A+ +       +    D L A+ H T+   +    
Sbjct: 182  HREQDDVARLQVLQALAQQLGMTALASGDVHMAQRRERIVQDTLTAIRH-TLPLAECGAH 240

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +  +     R+            L+ TVE+++RC+F +   +   PR +  E        
Sbjct: 241  LFRNGERHLRTRRALGNIYPDALLQATVELSQRCTFDISKISYTYPRELVPEG----HTP 296

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR    AG+  R   G  A        R+ ++ EL +IA   +  +FL V D +++A
Sbjct: 297  TSYLRQLTEAGIRKRWPGGISA------KVREDIEKELALIAFKNYEAFFLTVQDVVRFA 350

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  +I    GRGS A S   YAL IT ++P    LL  RFL+  R   PD D+DF  +RR
Sbjct: 351  RDQDIL-CQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFEHERR 409

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV +KYG ER A   T    + K+A+RDV +A  +P  Q+  L            
Sbjct: 410  EEVLQYVYSKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGETP 469

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              Q I +        LA+P ++++L +++ L    RH S H  G VI D PLS LVP+  
Sbjct: 470  MEQRIEE----AGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPLSLLVPVEN 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
                +  + Q++   +E   L+K D L L  LT ++K+L+ +   RG    ++ +P DD 
Sbjct: 526  AAMPNRTIIQWDKDDLETMQLLKVDCLALGMLTCIRKTLELVRGHRGRNYSIATLPGDDA 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 586  PTYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGDMVHPYLRR 645

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-E 723
            + G+E++    P ++ +LK T GV ++QEQVM++    + YS  EAD LRR+M    +  
Sbjct: 646  RQGREEVNYPSPAVEDILKPTLGVPLFQEQVMELLMHAADYSEDEADNLRRSMAAWRRGG 705

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +M++ + R        G + +    IFE +  F  YGF +SHAA++A + Y + W+K H 
Sbjct: 706  DMEQHRTRVRERMQGKGYASSFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRHE 765

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQD-----ARQFNIQIMPPSVNTPCVDFKVGDN----- 833
            P  F    +  +        +  QD       +  ++++P  V     D  +        
Sbjct: 766  PAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVLHSDWDNTLVGGRPWRS 825

Query: 834  --------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                     I   +  + G+    A+ I+ A   + F  + D C R     L+ +   +L
Sbjct: 826  AADPGEQPAIRLGMRQVAGLSQVVAQRIVAARTQRAFADIGDLCLRA---ALDEKARLAL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              AGAL     +R     ++  ++     +                   S +    +F  
Sbjct: 883  AEAGALQGMVGNRNAARWAMAGVEARRPLL-----------------PGSPEERPVEFEA 925

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
              +      + R +G     HP+ + +P +R+  I G  E      G+ + +A +V  +Q
Sbjct: 926  PRAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRELQGRRHGSGVHVAGLVTQRQ 985

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  T KG+   +VT  +         +
Sbjct: 986  RPATAKGT--IFVTLEDEQGMINVIVW 1010


>gi|317121639|ref|YP_004101642.1| DNA polymerase III subunit alpha [Thermaerobacter marianensis DSM
           12885]
 gi|315591619|gb|ADU50915.1| DNA polymerase III, alpha subunit [Thermaerobacter marianensis DSM
           12885]
          Length = 1264

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 292/886 (32%), Positives = 463/886 (52%), Gaps = 39/886 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL  HS+YS L+GA  +  ++++ A    PA+A+TD +N+  A+EF + A AAGI+PI
Sbjct: 2   FVHLHCHSAYSFLDGASPVQALVERAAGLGMPALALTDHDNVAGAVEFDRAARAAGIKPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFP---------TVPSIVLLVSTAEGYQRLIELVSRMYL 121
            G +L + + +    +  G +  P             +VLL +   GY RL  L++R +L
Sbjct: 62  QGVELTLLLDEPAGSSGGGTSERPLTAPRGGELATAHLVLLATGPAGYARLCRLLTRAHL 121

Query: 122 LDQGKQSVRICLSWLQE--------IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +Q +    +  S L E        +   GLI L+G   GP+ +A        A +R   
Sbjct: 122 -EQPRGRPALPWSVLLEEVAPGGEPLPGHGLIALSGCRRGPVLQALLQGDRATALERARR 180

Query: 174 FKKLFG-DRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            +  FG +  ++ LQ      +R     +  LA    + +VATN+  + + + +  HD+L
Sbjct: 181 LRDTFGREHFFLELQGGWLPGNRALNRTLADLAEHLGVGVVATNDVHYATRDRFAVHDLL 240

Query: 232 MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
             V     V +    R    ++ LK+   M  +F+  P+AL+ T+ IA RC  +L   A 
Sbjct: 241 ACVRLGIPVDEPHPQRHLNAENDLKSPRAMAQMFAGYPQALKATLAIAERCQPVLPAGAV 300

Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             P F            E  LR +   G            G      RQRL+ EL +I +
Sbjct: 301 PRPAFPLPPG----IRAEAYLREQVERGALW-------RYGRITPRIRQRLEHELRIIEK 349

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           ++ + YFL+V D  ++A++  I    GRGS A S  AY L ITD+D +   LLFERFL+ 
Sbjct: 350 LQLADYFLLVWDVARYARQQGIRCA-GRGSAADSAVAYCLGITDVDAIERGLLFERFLSL 408

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
           +R   PD DIDF    RD+V  YV+ +YG E VA + T+ +  A+ ALRD G+AL  P +
Sbjct: 409 ERAEQPDIDIDFDARYRDQVADYVEQRYGPEHVATVCTYQTYHARGALRDFGKALGFPTA 468

Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            +DR+ K +P   +  +  +A+ +    R+  L      RL+++ +   GL RH  TH  
Sbjct: 469 VIDRIAKRVPYALSRHL-GRALEEVPELRDLDLPRERFRRLVDLCEAAAGLPRHMGTHLG 527

Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
           G+VI  RPL +L P+ R       + QF+ + +E+ GL+K D L L+TL  +++++  + 
Sbjct: 528 GLVISRRPLVELSPLQR-SAKGRRILQFDKRGVEELGLVKLDLLPLRTLGAVEEAVRVIR 586

Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
           +R    D   IP DD  TY LL T  T+G FQLES   R     ++P+ +ED++A V++ 
Sbjct: 587 RRDPAFDYDRIPLDDRATYELLRTGETVGAFQLESPAQRALQPRLKPENLEDVVASVAII 646

Query: 651 RPGPIDNIVVYNN--RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
           RPGPI   +V     R+ G+E +  +HP ++P+L++T GV+++QEQV++IA  ++G++  
Sbjct: 647 RPGPIKGDMVEPFLARRRGREPVTYLHPKLEPILRKTWGVVLFQEQVIEIATAIAGFTPG 706

Query: 709 EADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
           EAD LRR M   +  E+M+     F+  A + G+ + +A  IF ++  +A YGF ++HAA
Sbjct: 707 EADRLRRVMTHARSPEDMEDIGRHFLRRAREQGVDEAVAQAIFRMIQGYASYGFCEAHAA 766

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
           A+ V +Y+TA++  HYP E+ AA ++L+          C +A +  I+I+P  +N   V 
Sbjct: 767 AFGVTAYKTAYLLAHYPAEWYAALLSLQPMGYYPPNTLCVEAARRGIRILPLDINASQVG 826

Query: 828 FKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRV 872
           F      I   L A+KG+G   A  I+       PF    DF  R+
Sbjct: 827 FAATPGAIRIGLRAVKGLGEEPAAAIVAERERGGPFRHFMDFLLRM 872



 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 11/158 (6%)

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
             L+R  + +L+ AGA D    +R  LL  LD     A+                  G  +
Sbjct: 944  VLDRDQVAALIRAGAFDGLHPNRRALLWGLDEALAAARSAAGGEL----------AGALA 993

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYF-SGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
               +           ++  E+ VLG      H L + + +L   G +          G +
Sbjct: 994  AAWSPPAVDDFPELEKWAMEREVLGIDVHRRHLLAMLREVLDARGYRSAAAIRRLPAGAS 1053

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +R A + V   +  TR G  I ++T  +     +   F
Sbjct: 1054 VRAAGIPVRPHRPPTRSGRIIVFLTLEDETGLVDVTVF 1091


>gi|170734171|ref|YP_001766118.1| error-prone DNA polymerase [Burkholderia cenocepacia MC0-3]
 gi|169817413|gb|ACA91996.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia MC0-3]
          Length = 1071

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 270/1061 (25%), Positives = 453/1061 (42%), Gaps = 72/1061 (6%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +       P +  L   S++S L GA     ++++        IAITD  +L  A     
Sbjct: 1    MVAEFSLLPDYAELFCRSNFSFLHGASHAEELVERADELGYRGIAITDECSLAGAPRMHV 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A   G+  +IG   D+   +       G  P P    +VLL    EGY  L EL+S   
Sbjct: 61   AAKEKGLPLVIGSYFDVTPDE----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-R 115

Query: 121  LLDQGKQSVRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             ++  K + ++    L     +   L  +    +  +        + V + ++  F+  F
Sbjct: 116  RMEAPKGTYKLTSRILSAPPAKFAHLRGMPDCFAILVPTY--PVRADVLDAQVAWFRATF 173

Query: 179  GDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            G+R  + L Q  R  D  +  ++        + LVA  +            DV+ A+   
Sbjct: 174  GERARLGLVQLQRALDGVQRDEIRAAGKRRGVRLVALGDVTMHVRSCKALQDVMTAIRVG 233

Query: 238  TVV-SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              V           + +L++R  +  +FS   E +  T  +   C F L       P  +
Sbjct: 234  MPVAECGYALAPNAEQHLRSRGRIAKLFS--AEEIGETCAMLDACDFDLDDLKYEYPLEL 291

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                        + L+ +  AG+  R   G        +   +++ +EL +IA++++  +
Sbjct: 292  VPRG----HTPTSYLKQETWAGVARRYWNGV------PEKVAKQIRYELALIAKLEYEPF 341

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V D +++A+  NI    GRGS A SV  Y L IT+++P + ++LFERF++  R   P
Sbjct: 342  FLTVYDIVKYARSQNIL-CQGRGSAANSVVCYCLGITEVNPDQSTMLFERFISEKRGEPP 400

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF   RR+EVI+++  KYG +R A      + + +  LR+ G+AL +    VDR+ 
Sbjct: 401  DIDVDFEHQRREEVIQHIYKKYGKDRAALAAAVSTYRPRGVLRETGKALSVDPMLVDRVA 460

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            K           LQ  A          A P +    E++ +L    RH S H+ G VI  
Sbjct: 461  KGHRWFDGSRDLLQQFAST----GLDPATPIIQTWAELAGRLLNFPRHLSQHSGGFVISR 516

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------A 590
              L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ D        A
Sbjct: 517  GKLTRLVPVENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWRGPA 576

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            + G    L  IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ 
Sbjct: 577  KDGKPFTLKHIPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLRPRNYYDLVVQVSIV 636

Query: 651  RPGPIDNIVVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            RPGPI    V+   K  +        ++      +  +L  T GV I+QEQVMQIA + +
Sbjct: 637  RPGPIQGGAVHPYLKRRRIVAGEEKGEVTYPSDALKEVLVRTLGVPIFQEQVMQIAIVAA 696

Query: 704  GYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            G++  EAD LRRAM     K  ++K +++ ISG  +   ++  A  IFE +  F +YGF 
Sbjct: 697  GFTPGEADDLRRAMAAWKRKGNLEKYQDKIISGMLERNYTREFAEQIFEQIKGFGEYGFP 756

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            +SHAA++A ++Y ++W+K H P  FLAA +  +        +  QDA++  ++++P  V 
Sbjct: 757  ESHAASFAKLAYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHRVKVLPIDVT 816

Query: 823  TPCVDFKVG----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
                +  +              +   L+ ++G+    AR I  A    PFDS++    R 
Sbjct: 817  QSGWEASLEALPDQPPPHGQPAVRLGLSLVRGLSEAAARRIEAARTAGPFDSVDSLARRA 876

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
               +L RR LE+L  A AL      R   L             +        ++ A    
Sbjct: 877  ---QLERRDLEALAAANALATLAGHRRDALW------------QAVAAAPERDLLAAAP- 920

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
               D++        + +     +    G   + HP+ + +P LR   +    E      G
Sbjct: 921  --IDEVEQPALGAPSEADDILADYHTTGLTLNRHPVALLRPALRAQRLSSAAELRDRPDG 978

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               R   +V+++Q   T KG  + ++T  +          P
Sbjct: 979  RLARACGLVIARQMPGTAKG--VMFMTLEDETGCVNVIVRP 1017


>gi|229548984|ref|ZP_04437709.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|257421291|ref|ZP_05598281.1| DNA polymerase III subunit alpha [Enterococcus faecalis X98]
 gi|229306005|gb|EEN72001.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|257163115|gb|EEU93075.1| DNA polymerase III subunit alpha [Enterococcus faecalis X98]
 gi|315156892|gb|EFU00909.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0043]
 gi|315157679|gb|EFU01696.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0312]
          Length = 1109

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 319/1031 (30%), Positives = 511/1031 (49%), Gaps = 54/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +                 ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108

Query: 130  RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
                  L E  +    L  +T  + G + + FF    Q A          F    L+V  
Sbjct: 109  ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                  ++ R   +       +LP VA      L+ E+  A  VL ++  +  ++   + 
Sbjct: 161  -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +     R    ++   L  A    V+   + +   +V  P+  + +        + 
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAGSEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR+  +  L  R+           + Y++RL+ EL +I  M F  YFLIV D + +
Sbjct: 279  AGSYLRSLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
               N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +R
Sbjct: 332  CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN     
Sbjct: 392  REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +      +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LVP+ 
Sbjct: 452  LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP DD
Sbjct: 511  PGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLNQIPLDD 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+  RK
Sbjct: 570  ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +
Sbjct: 630  KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP 
Sbjct: 690  DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844
             F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  +++KG
Sbjct: 750  AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R QL  
Sbjct: 810  IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L++  +         +    ++          K   E+ +      R E E++ LG Y 
Sbjct: 870  GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918

Query: 964  SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            SGHP + +K   L K                  +L   V + +  +T+KG ++ +V   +
Sbjct: 919  SGHPTEEFKKTRLAKQTQL----VHELFENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974

Query: 1023 PAKEYEANFFP 1033
                     FP
Sbjct: 975  TTGSISLTLFP 985


>gi|315165092|gb|EFU09109.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX1302]
          Length = 1109

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 318/1031 (30%), Positives = 510/1031 (49%), Gaps = 54/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L   +EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGVVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +                 ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108

Query: 130  RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
                  L E  +    L  +T  + G + + FF    Q A          F    L+V  
Sbjct: 109  ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                  ++ R   +       +LP VA      L+ E+  A  VL ++  +  ++   + 
Sbjct: 161  -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +     R    ++   L  A    V+   + +   +V  P+  + +        + 
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D + +
Sbjct: 279  AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
               N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +R
Sbjct: 332  CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN     
Sbjct: 392  REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +      +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LVP+ 
Sbjct: 452  LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP DD
Sbjct: 511  LGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIPLDD 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+  RK
Sbjct: 570  ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +
Sbjct: 630  KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP 
Sbjct: 690  DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844
             F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  +++KG
Sbjct: 750  AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R QL  
Sbjct: 810  IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L++  +         +    ++          K   E+ +      R E E++ LG Y 
Sbjct: 870  GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918

Query: 964  SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            SGHP + +K   L K            +     +L   V + +  +T+KG ++ +V   +
Sbjct: 919  SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974

Query: 1023 PAKEYEANFFP 1033
                     FP
Sbjct: 975  TTGSISLTLFP 985


>gi|307286902|ref|ZP_07566982.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0109]
 gi|312900994|ref|ZP_07760287.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0470]
 gi|306502027|gb|EFM71314.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0109]
 gi|311291895|gb|EFQ70451.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0470]
          Length = 1109

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 318/1031 (30%), Positives = 510/1031 (49%), Gaps = 54/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L   +EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGVVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +                 ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108

Query: 130  RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
                  L E  +    L  +T  + G + + FF    Q A          F    L+V  
Sbjct: 109  ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                  ++ R   +       +LP VA      L+ E+  A  VL ++  +  ++   + 
Sbjct: 161  -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +     R    ++   L  A    V+   + +   +V  P+  + +        + 
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D + +
Sbjct: 279  AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
               N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +R
Sbjct: 332  CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN     
Sbjct: 392  REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +      +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LVP+ 
Sbjct: 452  LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP DD
Sbjct: 511  LGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIPLDD 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+  RK
Sbjct: 570  ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +
Sbjct: 630  KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP 
Sbjct: 690  DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844
             F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  +++KG
Sbjct: 750  AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R QL  
Sbjct: 810  IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L++  +         +    ++          K   E+ +      R E E++ LG Y 
Sbjct: 870  GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918

Query: 964  SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            SGHP + +K   L K            +     +L   V + +  +T+KG ++ +V   +
Sbjct: 919  SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974

Query: 1023 PAKEYEANFFP 1033
                     FP
Sbjct: 975  TTGSISLTLFP 985


>gi|315168074|gb|EFU12091.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX1341]
          Length = 1109

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 318/1031 (30%), Positives = 510/1031 (49%), Gaps = 54/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +                 ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108

Query: 130  RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
                  L E  +    L  +T  + G + + FF    Q A          F    L+V  
Sbjct: 109  ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                  ++ R   +       +LP VA      L+ E+  A  VL ++  +  ++   + 
Sbjct: 161  -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +     R    ++   L  A     +   + +   +V  P+  + +        + 
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAGAEVAQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D + +
Sbjct: 279  AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
               N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +R
Sbjct: 332  CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN     
Sbjct: 392  REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +      +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LVP+ 
Sbjct: 452  LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP DD
Sbjct: 511  PGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLNQIPLDD 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+  RK
Sbjct: 570  ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +
Sbjct: 630  KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP 
Sbjct: 690  DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844
             F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  +++KG
Sbjct: 750  AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R QL  
Sbjct: 810  IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L++  +         +    ++          K   E+ +      R E E++ LG Y 
Sbjct: 870  GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918

Query: 964  SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            SGHP + +K   L K            +     +L   V + +  +T+KG ++ +V   +
Sbjct: 919  SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974

Query: 1023 PAKEYEANFFP 1033
                     FP
Sbjct: 975  TTGSISLTLFP 985


>gi|315149565|gb|EFT93581.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0012]
          Length = 1109

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 319/1030 (30%), Positives = 511/1030 (49%), Gaps = 52/1030 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +                 ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108

Query: 130  RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
                  L E  +    L  +T  + G + + FF    Q A          F    L+V  
Sbjct: 109  ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                  ++ R   +       +LP VA      L+ E+  A  VL ++  +  ++   + 
Sbjct: 161  -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +     R    ++   L  A    V+   + +   +V  P+  + +        + 
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D + +
Sbjct: 279  AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
               N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +R
Sbjct: 332  CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN     
Sbjct: 392  REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +      +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LVP+ 
Sbjct: 452  LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP DD
Sbjct: 511  LGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIPLDD 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+  RK
Sbjct: 570  ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +
Sbjct: 630  KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP 
Sbjct: 690  DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844
             F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  +++KG
Sbjct: 750  AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R QL  
Sbjct: 810  IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L++  +         +    ++          K   E+ +      R E E++ LG Y 
Sbjct: 870  GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            SGHP + +K        +   E V        +L   V + +  +T+KG ++ +V   + 
Sbjct: 919  SGHPTEEFKKTRLAKQTQLVHELVG---NQPTKLLIYVKNIRTIRTKKGEQMAFVDGDDT 975

Query: 1024 AKEYEANFFP 1033
                    FP
Sbjct: 976  TGSISLTLFP 985


>gi|329577043|gb|EGG58517.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1467]
          Length = 1109

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 318/1031 (30%), Positives = 510/1031 (49%), Gaps = 54/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +                 ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108

Query: 130  RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
                  L E  +    L  +T  + G + + FF    Q A          F    L+V  
Sbjct: 109  ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                  ++ R   +       +LP VA      L+ E+  A  VL ++  +  ++   + 
Sbjct: 161  -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +     R    ++   L  A    V+   + +   +V  P+  + +        + 
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D + +
Sbjct: 279  AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
               N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +R
Sbjct: 332  CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN     
Sbjct: 392  REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +      +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LVP+ 
Sbjct: 452  LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP DD
Sbjct: 511  LGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIPLDD 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+  RK
Sbjct: 570  ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +A +LRRA+ KK K+ +
Sbjct: 630  KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQAAILRRAISKKKKDVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP 
Sbjct: 690  DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844
             F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  +++KG
Sbjct: 750  AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R QL  
Sbjct: 810  IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L++  +         +    ++          K   E+ +      R E E++ LG Y 
Sbjct: 870  GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918

Query: 964  SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            SGHP + +K   L K            +     +L   V + +  +T+KG ++ +V   +
Sbjct: 919  SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974

Query: 1023 PAKEYEANFFP 1033
                     FP
Sbjct: 975  TTGSISLTLFP 985


>gi|190892912|ref|YP_001979454.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652]
 gi|190698191|gb|ACE92276.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652]
          Length = 1087

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 260/1038 (25%), Positives = 458/1038 (44%), Gaps = 72/1038 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV + +S L GA S + +          A+ + D N+L   +   + + A G++ +
Sbjct: 3    YAELQVTTHFSFLRGASSADELFATAKELGIDAVGVVDRNSLAGIVRALEASRATGVRLV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC+LD+                    SI++  +    Y RL  L++        K +  
Sbjct: 63   VGCRLDLQDGM----------------SILVYPTNRAAYSRLTRLLTLGKGRGG-KDNCI 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RH 189
            + L  +     EGL+ +       +              +L    ++FG+R YV+L  R 
Sbjct: 106  LHLDDVALY-AEGLLGIL------VPDL----PDDTCAVQLRKMSEIFGNRAYVSLALRR 154

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRV 248
            R  D+ R  ++  LA T ++  V TN+ LF      +  DV+  + ++T + +       
Sbjct: 155  RPNDQLRLHEISNLAATFKVRTVVTNDVLFHEPGRRQLQDVVTCIRNNTTIDEVGFERER 214

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              D YLK   EM  +    PEAL  T+EI  RC F L       P        D Q+  E
Sbjct: 215  HADRYLKPPEEMERLLPRYPEALARTMEIVERCKFSLDELTYQYPEEAIVPGMDAQQSLE 274

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + +R      + +R  +G        +   + +  EL++I  MK++ YFL V   +++A+
Sbjct: 275  HYVR----ECIPIRYPEGL------PRKVLRAVRHELDLIKEMKYAPYFLTVFSIVKFAR 324

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I    GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +RR+
Sbjct: 325  SQGIL-CQGRGSAANSAICYILGITSIDPETNDLLFERFVSKERDEPPDIDVDFEHERRE 383

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH--P 486
            +VI+++   YG ++ A   T    +AK A+RDVG+AL +P   +  L   + +       
Sbjct: 384  QVIQWIYKTYGKDKAALCSTVTRYRAKGAIRDVGKALGLPEDVIKALSSGMWSWSEELPD 443

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             +++ +  +   R   L        L+++++L G  RH   H  G V+    L  LVP+ 
Sbjct: 444  RNIRELNLNPDDRRLALT-------LKLARQLMGAPRHLGQHPGGFVLTHDRLDDLVPIE 496

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDD 605
                 D  + +++   +E    +K D L L  LT + K+ D +     +  DL+ IP +D
Sbjct: 497  PATMKDRQIIEWDKDDVEALKFMKVDVLALGMLTCMNKAFDLIRDHKDEDLDLATIPQED 556

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
              TY ++    TLG FQ+ES      L  ++P+   D++  V++ RPGPI   +V+    
Sbjct: 557  AATYAMIRKADTLGTFQIESRAQMSMLPRLKPETFYDLVIQVAIVRPGPIQGNMVHPYLR 616

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R+ GKEK     P ++ +L  T GV ++QE  M++A + +G++  EAD LR++M      
Sbjct: 617  RREGKEKPEYPTPELEAVLGRTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATFKFT 676

Query: 724  -EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              + + K++ +SG  KNG S   A   F  L  F  YGF +SHAA++A+I+Y + ++K H
Sbjct: 677  GGVSRFKDKLVSGMIKNGYSPEFAEKTFGQLEGFGSYGFPESHAASFALIAYASNYVKCH 736

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------GDNRIY 836
            +P  F AA +  +        +   DA+   +++ P  +N    D  +        + + 
Sbjct: 737  FPDVFCAALLNSQPMGFYAAAQIVGDAKNHGVEVRPVCINKSRWDCTLERIGSGERHAVR 796

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFG 895
              +  ++G+    A  I+ A  ++ F+S++D   R     +    L+ L  A A      
Sbjct: 797  LGMRMVRGLAVADAARIVAARMNREFESVDDVWRR---SNVPTEALDQLAEADAFLPSLK 853

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R   + ++  +++    +      +        K     +    +            +
Sbjct: 854  LQRRDAIWAIKALREAPLPLFAAAAER------EVKVIPEQQEPEVRLRQMTEGHNVVQD 907

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
               +G     HP+   +  L+K  I    E++    G  +  A +V+ +Q   + KG  +
Sbjct: 908  YGHVGLTLRDHPITFLRRDLQKRNIVTCSEAMNARDGRWLMAAGLVLVRQMPGSAKG--V 965

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             ++T  +         +P
Sbjct: 966  MFITIEDETGPANIVVWP 983


>gi|190410010|ref|YP_001965534.1| probable DNA polymerase III alpha chain [Sinorhizobium meliloti]
 gi|125631040|gb|ABN47041.1| probable DNA polymerase III alpha chain [Sinorhizobium meliloti SM11]
          Length = 1085

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 264/1042 (25%), Positives = 443/1042 (42%), Gaps = 78/1042 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  LQV + +S L GA S   + +   A    A+ + D N+L   +   + + A G++ 
Sbjct: 2    SYAELQVTTHFSFLRGASSAQELFETAKALGIEALGVVDRNSLAGIVRALEASRATGLRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC+LD+                    S++        Y RL  L++        K + 
Sbjct: 62   VVGCRLDLQDGM----------------SVLAYPIDRAAYSRLTRLITLGKSRGG-KNNC 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
             +    +                G I          V   +L    ++FGDR YV+L  R
Sbjct: 105  ILHWDDVAAYN-----------DGMIGILVPDLPDDVCAIQLRKMAEVFGDRAYVSLCLR 153

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPR 247
             R  D+ R  ++  LA   ++  V TN+ LF      +  D++  +   T + +      
Sbjct: 154  RRQNDQLRLHEISNLAARFKVKTVVTNDVLFHEPGRRQLQDIVTCIRTRTTIDEVGFERE 213

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               D YLK   EM  +F   P+AL  T+EI RRC+F L+      P        D Q   
Sbjct: 214  RHADRYLKPPEEMERLFPRYPQALARTLEIVRRCTFSLEELTYQYPEEAIVPGKDAQASL 273

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+         +  R  +G         D  + +  EL++I  MK++ YFL V   +++A
Sbjct: 274  EHY----VWQCVPDRYPEGL------PPDVLKVVRHELDLIRTMKYAPYFLTVFSIVRYA 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I    GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +RR
Sbjct: 324  RSQGIL-CQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERR 382

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+++   Y  E+ A   T    +A+ A+RDVG+AL +P   +  L   +        
Sbjct: 383  EEVIQWIYRTYTREKAALCATVTRYRARGAIRDVGKALGLPEDVIKALSSGMWAW----- 437

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            S +    + R       D  +   L+++Q+L G  RH   H  G V+    L  LVP+  
Sbjct: 438  SEEVCDRNVRELNLNPDDRRLVLTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEP 497

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606
                D  + +++   +E    +K D L L  LT + K+ D + +   +  DLS I  +D 
Sbjct: 498  ATMKDRQIIEWDKDDVEALKFMKVDILALGMLTCMAKAFDLIREHKDRDLDLSDIEQEDP 557

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 558  ATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPYLRR 617

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE- 723
            + GKE +    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M       
Sbjct: 618  REGKEAVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFTG 677

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             + + K++ +SG  +NG +   A   F  L  F  YGF +SHAA++A+I+Y ++++K HY
Sbjct: 678  GVSRFKDKLVSGMVRNGYTPEFAEKTFSQLEGFGSYGFPESHAASFALIAYASSYIKCHY 737

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRIYY 837
            P  F AA +  +        +   DAR   +++ P  +N    D  +        + +  
Sbjct: 738  PEAFCAALVNSQPMGFYAPAQIVGDARAHGVEVRPVCINRSRWDCTLERIGDSGRHAVRL 797

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGY 896
                +KG+       I+ A  D  F S++D   R     ++   L  L  A A       
Sbjct: 798  GFRQVKGLAVAETARIVAARMDNAFASVDDMWRR---SGVSSEALVQLAKADAFLPSMKL 854

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV-----ENSSVR 951
             R   L ++  ++                +FA         I  ++              
Sbjct: 855  ERRDALWAIKALRDE-----------PLPLFAAAAKREMAAIAEQQEPEVALRQMTDGHN 903

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +    G     HP+   +  L    I    E++ +  G  +  A +V+ +Q   + K
Sbjct: 904  VIEDYSHTGLTLRQHPIAFLRKDLSVRNIITCAEAMNSRDGRWVYTAGLVLVRQMPGSAK 963

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G  + ++T  +         +P
Sbjct: 964  G--VMFITIEDETGPANLVVWP 983


>gi|229546892|ref|ZP_04435617.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1322]
 gi|256852698|ref|ZP_05558069.1| DNA polymerase III [Enterococcus faecalis T8]
 gi|229308057|gb|EEN74044.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1322]
 gi|256712043|gb|EEU27080.1| DNA polymerase III [Enterococcus faecalis T8]
 gi|315029734|gb|EFT41666.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX4000]
          Length = 1109

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 318/1031 (30%), Positives = 512/1031 (49%), Gaps = 54/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +                 ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108

Query: 130  RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
                  L E  +    L  +T  + G + + FF    Q A          F    L+V  
Sbjct: 109  ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                  ++ R   +       +LP VA      L++E+  A  VL ++  +  ++   + 
Sbjct: 161  -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTKEEGFAVTVLESIKENNQLNITSQT 219

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +     R    ++   L  A    V+   + +   +V  P+  + +        + 
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAGNCRVDIPLHQKLLPHFPVLANQT 278

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D + +
Sbjct: 279  AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
               N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +R
Sbjct: 332  CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN     
Sbjct: 392  REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +      +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LVP+ 
Sbjct: 452  LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP +D
Sbjct: 511  PGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIPLND 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+  RK
Sbjct: 570  ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +
Sbjct: 630  KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP 
Sbjct: 690  DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844
             F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  +++KG
Sbjct: 750  AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R QL  
Sbjct: 810  IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L++  +         +    ++          K   E+ +      R E E++ LG Y 
Sbjct: 870  GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918

Query: 964  SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            SGHP + +K   L K            +     +L   V + +  +T+KG ++ +V   +
Sbjct: 919  SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974

Query: 1023 PAKEYEANFFP 1033
                     FP
Sbjct: 975  TTGSISLTLFP 985


>gi|329846730|ref|ZP_08262003.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19]
 gi|328844237|gb|EGF93805.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19]
          Length = 1075

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 268/1042 (25%), Positives = 454/1042 (43%), Gaps = 77/1042 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +V LQ  S +S L G  + +++  +  A    A+AI D N L   +     A   G++
Sbjct: 2    PDYVELQCASYFSFLRGCSAPDDLFAQAKALGMEALAIADRNTLAGIVRAHVAAKETGVR 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIGC+LD+                    SI++      GY RL  L+S        K +
Sbjct: 62   LIIGCRLDLTDGM----------------SILVYPVDRAGYGRLCRLLSLGKSRGG-KGA 104

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
              +  S +++   EGLI +               + ++   RL  FK++F DR Y+ L  
Sbjct: 105  CDLEWSDIEDFH-EGLIAI----------FIPDEADELCAVRLRRFKQVFADRAYMALTL 153

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV-VSQKDRP 246
            RHR  D  R  ++  LA+ H +P V TN+ L+   E    HDV+  + +     +  D  
Sbjct: 154  RHRQNDHMRLHELSNLAFKHRVPTVVTNDVLYHIHERAMLHDVVTCIRNRCTIDTMGDLR 213

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                D +LK+  EM  +FSD  +A+  T+EIA R  F L       P             
Sbjct: 214  HRYADRFLKSPEEMGRLFSDYRQAMARTIEIADRSRFSLAELEYQYPEEKLMSGM----S 269

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L+  + AG + R  +G            + L  EL++I R+ ++ YFL V   +Q+
Sbjct: 270  AIEALKRLSWAGAKWRYPEGV------PDKVIKLLKHELDLIERLDYAPYFLTVNAIVQF 323

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I    GRGS A S   Y L +T +DP R  LLFERF++ +R   PD D+DF   R
Sbjct: 324  ARSKDIL-CQGRGSAANSCVCYVLGVTSVDPDRNDLLFERFISEERKEPPDIDVDFEHQR 382

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+++V   YG    A        + + ALRD  + L  P   +  L   I +  +  
Sbjct: 383  REEVMQWVFKTYGRNHAALTAVVTRFRTRGALRDTLKVLGFPEDTIKTLASSIRHWHSTG 442

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             S     +D+        D  +    EI   L  + R  S H  G V+    L +LVP+ 
Sbjct: 443  FS----EEDAAELNLNTKDRRLKLAFEIHLLLLDVPRQLSQHPGGFVLTHDRLDELVPIE 498

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                 D  V +++   I+    +K D L L  ++ ++++ D L +   + +D+S IP +D
Sbjct: 499  PARMKDRQVIEWDKDDIDAVKFMKVDCLALGMMSCMKRAFDLLGEHKGIHIDMSCIPPED 558

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
             +TY ++    T+G FQ+ES      L   +P    D++  V++ RPGPI   +V+    
Sbjct: 559  PKTYAMIRNADTIGTFQIESRAQMSMLPRTKPRTFYDLVIQVAIVRPGPIQGDMVHPYLR 618

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R  G E++    P +  +L +T GV ++QEQ M++  + +G++  +AD++RRA     K 
Sbjct: 619  RLEGLEEVTFPTPELAAILGKTLGVPLFQEQAMRVVIVCAGFTAGQADLVRRAQATFKKT 678

Query: 724  -EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              +    +  I+G   NG ++  A+ + + L  F  YGF +SHA ++A+IS  +AWMK H
Sbjct: 679  GGIGPLAQDIINGMKGNGYTEEFALTLVKQLEGFGSYGFPESHAFSFAIISEASAWMKCH 738

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------RIY 836
            +P  FLAA +  +        +  +DA+   +++    VN    D  +          + 
Sbjct: 739  HPDVFLAAILNSQPMGFYAPGQLIRDAKLHGVEVRWFCVNNSRWDCSLEPTERPGRFAVR 798

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CFG 895
                 +KG+ +     ++    D P+ S+ D   R  +       L  L  A   +  F 
Sbjct: 799  LGYRLVKGIRSQEIAEMILRRGDLPYKSVPDLWRRAKTPV---ATLRKLARADVFEQAFK 855

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITLEKFSV--ENSSV 950
             SR + L S+  ++  A             +F     E G    +I              
Sbjct: 856  VSRREALFSIRALRDDA-----------LPLFDSLLDETGRSLSEIDQPDMDFKRMTDGA 904

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                +   +GF    HP+   +  L++  I    E++ +     +++A MV  +Q+  + 
Sbjct: 905  EVVEDYNQVGFTKGSHPVAFLRADLKERSIITCREAMTSKDKRYVQVAGMVNVRQRPGSA 964

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
             G  + ++T  + + +     +
Sbjct: 965  NG--VIFMTIEDESGDANIVVW 984


>gi|300693740|ref|YP_003749713.1| DNA polymerase iii, alpha subunit [Ralstonia solanacearum PSI07]
 gi|299075777|emb|CBJ35082.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum PSI07]
          Length = 1075

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 259/1073 (24%), Positives = 430/1073 (40%), Gaps = 111/1073 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA   + ++++  A    A+A+TD  ++   +     A  AG+ 
Sbjct: 12   PDYAELHCISNFTFLTGASHPHELVERAKALGYQALALTDECSVAGTVRAHMAAKEAGLT 71

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG +  +                     +VLL    +GY  L E +++  L    K  
Sbjct: 72   LIIGSRFTVRDAQGEPWL-----------RLVLLAQDIDGYGNLCECITQARLA-APKGD 119

Query: 129  VRICLSWLQEIGTEGLIMLTG---GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL--Y 183
             R+    L      GL  L G     +  +         +    +    +++FGDRL   
Sbjct: 120  YRLLADDLAA-PAGGLAHLRGMPQCLAILLPDY--DPDPRHLLAQAQWCRQVFGDRLSMA 176

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            + L      DR+R   V  ++   ++P+VAT +    S +    HDVL A+  S  +++ 
Sbjct: 177  LELPLRHADDRHR-GTVSAVSDQTDVPMVATGDVAMHSRQRKPLHDVLTAIRLSRPIAEC 235

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPE---ALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                             ++ F         L  +VE+A  C F L       P  +  E 
Sbjct: 236  GLELAPSAEQAMRTRMQLAFFYQGERGAKVLRRSVELASLCDFSLDEVEYAYPHEVVPEG 295

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +     L  + +AG E R  +   A        + ++  EL +IA +++  +FL V
Sbjct: 296  ----QTPAGYLHAEVMAGAERRYGKDVPA------KVQAQIVEELALIAELRYEPFFLTV 345

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +++A+   I    GRGS A S   Y L IT+++P   + LF RFL+  R   PD D+
Sbjct: 346  YDVVRFARSQGIL-CQGRGSAANSAVCYCLGITEVNPESGNTLFARFLSRARNEPPDIDV 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR+EVI+Y+  KYG  R A      + + ++ALRDVGRAL +    ++++ K   
Sbjct: 405  DFEHQRREEVIQYIYKKYGLTRTALAAALITYRTRSALRDVGRALGIDLGVIEQVAKAQA 464

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                        A  +  +      P V R   +  +L G  RH S H  G VI    LS
Sbjct: 465  WWDGK----HEFAQRAGQQGLDPESPLVQRWAGLIGQLRGFPRHLSQHVGGFVIAQGKLS 520

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-------LAQRG 593
            +LVP+      +  V Q++   +E   L+K D L L  LT ++++LD         A  G
Sbjct: 521  RLVPIENAAMPERRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDMLDALPGRRAHYG 580

Query: 594  VKVDLSLIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                L++      D +TY +++   T+G+FQ+ES   +  L  ++P    D++  V++ R
Sbjct: 581  APDKLAMQHLPDEDPDTYDMISRAETIGVFQIESRAQQSMLPRLRPRTYYDLVIQVAIVR 640

Query: 652  PGPIDNIVVYNNRKN-------GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            PGPI   +V+   +          + +    P +  +L+ T GV I+QEQVM+IA    G
Sbjct: 641  PGPIQGGMVHPYLQRREAVRNGNPDCVTYPGPEVKAVLERTLGVPIFQEQVMEIAMKAGG 700

Query: 705  YSLSEADVLRRAM--GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            ++  EAD LRR M   K+       Q                    +   +  FA+YGF 
Sbjct: 701  FTADEADRLRRDMAAWKRKGNLTQHQARLMKEMVEVRHYDPAFVEALCRQMEGFAEYGFP 760

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            +SHAA +A ++Y ++++K H P  F AA +  +        +  Q+AR+  ++++P  V 
Sbjct: 761  ESHAAGFARLAYVSSYLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRSRVRVLPADVT 820

Query: 823  TPCVDFKV--------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                D  +        G   I   L+ I+G+    A  I+   A  PF S+ED   R   
Sbjct: 821  ASAWDSTLHARPDGEGGQPDIRLGLSRIRGMRPPAAERIVATRAQAPFSSVEDLAHRA-- 878

Query: 875  KKLNRRVLESLVFAGALDCFG--------------YSRMQLLQSLDNIQKYAQWVEKNRT 920
                           ALD                   R Q L     +Q+  Q       
Sbjct: 879  ---------------ALDRHDLSVLAAANALLSLAGHRRQALWQTLALQEPGQDHA---- 919

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                 +    +   +  +        +       +   LG     HPL + +P L +M  
Sbjct: 920  -----LLRGARPVEAPLV----LPAPSLGEEVVADYGSLGLSLQSHPLSLLRPRLERMRF 970

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                       G   R   +V  +Q+  T KG+   +V+  +         +P
Sbjct: 971  VTAATLAGYRNGQLARACGIVTVRQRPGTAKGT--IFVSIEDETGVVNVVLWP 1021


>gi|329851038|ref|ZP_08265795.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19]
 gi|328839884|gb|EGF89456.1| DNA polymerase III, alpha subunit [Asticcacaulis biprosthecum C19]
          Length = 1069

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 265/1036 (25%), Positives = 455/1036 (43%), Gaps = 78/1036 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +++ LQV + +S L GA S   +  + A     A+ + D N+L   ++  + A A G++ 
Sbjct: 2    TYIELQVTTHFSFLRGASSPEELFHRAAELGIEALGVVDRNSLAGIVQAHKWAKATGVRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC+LD+                    S+++  +    Y  L  L+S       GK   
Sbjct: 62   IVGCRLDLVDG----------------ASLLVYPTDKAAYSHLCRLLSLGKGR-AGKGKC 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
            ++  + ++     GLI +          A            L     +FGDR Y+ L  R
Sbjct: 105  QLDWNDVEAWNA-GLIAVLVPDMADDTCALN----------LRRLATIFGDRAYLALTLR 153

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPR 247
             R  D  R  ++ Q+A    +P VATN+ L+         DV+  + H+  + +   R  
Sbjct: 154  RRPNDALRLYELTQIAVKLGVPTVATNDVLYHDASRRILQDVVTCIRHNCTIDEAGFRRE 213

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               D YLK   EM  +F   P+A+  T EIA RC F ++            E        
Sbjct: 214  RHADRYLKPGDEMARLFKAYPDAVARTQEIAARCRFDMKELEY----QYPDEKSHPHLTP 269

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L      G   R   G            ++L  EL++IA M ++ YFL V D + +A
Sbjct: 270  QQALEKFVRIGAAKRYPDGV------PDKVEKQLRHELDLIAEMGYANYFLTVHDIVHFA 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  +I    GRGS A S   Y L IT++DP ++ LLF RFL+ +R   PD D+DF   RR
Sbjct: 324  RSQDIL-CQGRGSAANSSVCYVLGITELDPAKYDLLFARFLSKNRNEPPDIDVDFEHARR 382

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            + V+++V + YG +  A +      + + ALRDVG+AL +P   +  L +   +  A  +
Sbjct: 383  EIVMQWVFDTYGRDHAALVAVVTRYRIRGALRDVGKALGVPEDVLKVLAQQYRHW-ATEL 441

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                +   +  R+AR     +   L+++++L    RH S H  G V+    L  L  +  
Sbjct: 442  DETHLEGLNLNRDAR----RIRLTLDLTRQLVNAPRHLSQHPGGFVLTRDRLDDLAVIEP 497

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                +  V +++   I++   +K D L L  LT ++KS D LA+   V +D++ IP DD 
Sbjct: 498  AAMKNRQVIEWDKDDIDELKFMKVDCLALGMLTCMKKSYDMLAEHKGVAMDMAGIPADDK 557

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    T+G+FQ+ES      L  ++P    DI   V++ RPGPI   +V+    R
Sbjct: 558  PTYAMICKADTVGVFQIESRAQMSMLPRLRPANFYDIAIEVAIVRPGPIQGDMVHPYLRR 617

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE- 723
            K+G E I   +  +  +L  T GV ++QE  M++A + +G+S  EAD +RR++       
Sbjct: 618  KHGLEPIEYPNEAVRDILGRTFGVPLFQEHAMKVAVVCAGFSDDEADHVRRSLATFKHTG 677

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +   +++  +G    G S   +  +   L  F  YGF +SHA ++A+I+Y ++WMK H+
Sbjct: 678  GVKNFRDKMYAGMIGRGYSPEFSERLINQLEGFGSYGFPESHAISFALIAYASSWMKCHH 737

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------RIYY 837
            P  FL A +  +        +  +DAR+  + + P  VN    D  + +        +  
Sbjct: 738  PDVFLCALLNSQPMGFYAPAQLVRDAREHGVDVRPVCVNASRYDCTLEETGTPGKLAVRL 797

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA-LDCFGY 896
                IKG+    A  ++ A  ++ + S+ +         L    L  L  A A     G 
Sbjct: 798  GFRMIKGMSEDEAAVLVAAREER-YGSIREVWR---HSGLPVSTLVRLAEADAFFPSLGQ 853

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            SR + L +L  ++                +F   + T    + L+  +  +       + 
Sbjct: 854  SRREALWALKGMRDT-----------PLPLFDGPE-THEPAVVLKAMTAGSE---VVQDY 898

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              +G     HP+   +  L + GI   + + A    ++  +A MV+ +Q+  T KG  + 
Sbjct: 899  GHVGLSLRRHPVSFLRGELSERGIVTCKAANARKDKSHALVAGMVLVRQRPGTAKG--VT 956

Query: 1017 WVTFSEPAKEYEANFF 1032
            ++T  +         +
Sbjct: 957  FMTIEDETGIANVVIW 972


>gi|115352937|ref|YP_774776.1| error-prone DNA polymerase [Burkholderia ambifaria AMMD]
 gi|115282925|gb|ABI88442.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria AMMD]
          Length = 1071

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 271/1055 (25%), Positives = 443/1055 (41%), Gaps = 76/1055 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA     ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASHAEELVERAAELGYRGIAITDECSLAGAPRMHVAAKAQGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G   ++   +       G  P P    +VLL    EGY  L EL+S   +    K +
Sbjct: 69   LIVGSFFEVTPDE----VTPGHDPGPGAFGLVLLAQNREGYGNLSELISWRRMAS-PKGT 123

Query: 129  VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L     E   L  +    +  +        + V + ++  F+  FG R  + L
Sbjct: 124  YRLTSRMLSAPPAEFAHLRGMPDCFAILVPTY--PVRADVLDAQVAWFRATFGARARLGL 181

Query: 187  -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             Q  R  D  +  ++        + +VA  +            DV+ A+     V     
Sbjct: 182  VQLQRPLDGAQREEIRAAGERRGVRIVALGDVTMHRRSCKPLQDVMTAIRVGMPV----- 236

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD---D 302
               +   Y    +    + +    A   + E       IL      L     +  D    
Sbjct: 237  ---SECGYALAPNAEQHLRARGRIAKLFSPEELDETCAILDACDFKLDSLQYEYPDEIVP 293

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                    L  +  AG   R  QG        +   +++ +EL++IAR+ +  +FL V D
Sbjct: 294  KGLTPTRHLEQETFAGAAARYPQG------IPEKVERQIRYELDLIARLSYEPFFLTVYD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+  NI    GRGS A SV  Y L IT+++P + ++LFERF++ +R   PD D+DF
Sbjct: 348  IVKYARSQNIL-CQGRGSAANSVVCYCLGITEVNPEQSTMLFERFISEERGEPPDIDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EVI+++  KYGH+R A      + + +  LR+ G+AL +    VDR+ K     
Sbjct: 407  EHQRREEVIQHIYKKYGHDRAALAAAVSTYRPRGVLRETGKALGVDPMLVDRVAKAHRWF 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                  LQ  A          A P +    E++ +L    RH S H+ G VI    L++L
Sbjct: 467  DGSRDLLQQFAST----GLDPATPIIRAWAELAGRLLNFPRHLSQHSGGFVISRGKLTRL 522

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------AQRGVKV 596
            VP+         V Q++   +E  GL+K D L L  L+ L ++ D         + G   
Sbjct: 523  VPVENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWRGPQEDGQPF 582

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             L  IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI 
Sbjct: 583  TLKHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLKPRNYYDLVVEVSIVRPGPIQ 642

Query: 657  NIVVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
               V+   K  +        +I      +  +L+ T GV I+QEQVMQIA + +G++  E
Sbjct: 643  GGAVHPYLKRRRIQAGEEEGEITYPSDALRVVLERTLGVPIFQEQVMQIAIVAAGFTPGE 702

Query: 710  ADVLRRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD LRRAM    +        ++ ++G  + G ++  A  IFE +  F +YGF +SHAA+
Sbjct: 703  ADRLRRAMAAWKRRGDLGPYHDKIVNGMLERGYTREFAEQIFEQIKGFGEYGFPESHAAS 762

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            +A ++Y ++W+K H P  FLAA +  +        +  QDA++  +Q++P  V     + 
Sbjct: 763  FAKLAYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHGVQVLPIDVTLSNWEA 822

Query: 829  KVG----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
             +              +   L+ ++G+G   AR I  A A  PFD+++    R    +L 
Sbjct: 823  SLEALPDQPPPHGQPAVRLGLSLVRGLGEAAARRIEAARAAGPFDNVDVLARRA---QLE 879

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            RR LE+L  A AL      R   L             +        ++ A       D+ 
Sbjct: 880  RRDLEALAAANALVTLAGHRRDALW------------QAVAAAPERDLLAAAP---IDEP 924

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
                    + +     +    G   + HP+ + +P LR   +    E      G   R  
Sbjct: 925  EKPALGAPSEADDILADYDTTGLTLNRHPVALLRPALRAQRLSSAAELRDRSDGRLARAC 984

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +V ++Q   T KG  + ++T  +          P
Sbjct: 985  GIVTARQMPGTAKG--VMFMTLEDETGCVNVIVRP 1017


>gi|124266725|ref|YP_001020729.1| DNA polymerase III subunit alpha [Methylibium petroleiphilum PM1]
 gi|124259500|gb|ABM94494.1| DNA polymerase III, alpha subunit [Methylibium petroleiphilum PM1]
          Length = 1099

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 262/1070 (24%), Positives = 428/1070 (40%), Gaps = 100/1070 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC---AA 65
            P++  L   S++S L GA     ++++ A     AIAITD  ++   +            
Sbjct: 28   PAYAELHCRSNFSFLTGASHPQELVERAAQLGYAAIAITDECSVAGVVRAHAALKRLREN 87

Query: 66   GIQP----IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            G  P    IIG +  +             +P      +VLL    EGY ++  L++    
Sbjct: 88   GNPPLPALIIGSEFTLA-----------ASPTAPGCRLVLLAKNREGYAQICGLITLGRG 136

Query: 122  LDQGKQSVRICLSWLQEI-----GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
                K   ++ +  L  +        G+       +  I R            +      
Sbjct: 137  RSA-KGHYQLSVDDLDALLAGQGHAAGV---PDCLALLIPR--RDEPHATLLAQARWLAG 190

Query: 177  LFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
              G+R  + ++  R   D     +++  +    LPL A  + L          D L A+ 
Sbjct: 191  RCGERASIAVELLRWADDESFVERLLDASAASGLPLAAAGDVLMHVRSRKPLQDTLTAIR 250

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                        +  +     RS +       PE L+ +V++AR C F L+      P  
Sbjct: 251  LKR-RVADCGYALMRNAEQHLRSRLALAQLCRPEWLQRSVDLARACDFSLEQLKYEYPDE 309

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            I    +       + LR     G  VR   G           + +++ E  +I R ++  
Sbjct: 310  IVPAGE----TASSHLRRLTEEGACVRYPGGVPGM------VQAQIEHEFALIFRKRYEA 359

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            +FL V D +++A+   I    GRGS A S   Y L IT++DP +  LLFERF++ +R   
Sbjct: 360  FFLTVHDVVRFARSEGIL-CQGRGSAANSAVCYCLGITEVDPTQTPLLFERFISEERGEA 418

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DF  +RR+EVI+Y+  KYG  R A      + + + A+R+VG+AL +   ++DRL
Sbjct: 419  PDIDVDFEHERREEVIQYIYGKYGTHRTALAAALATYRVRGAVREVGKALGLDGQRIDRL 478

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             K       H      + +           P   + L +S  L G  RH S H  G VI 
Sbjct: 479  AKSHQWFDGHEALPARLVE----AGFDPDAPVTRQWLALSAALIGFPRHLSQHVGGFVIA 534

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-- 593
               LS+LVP+      D  V Q++   +E  GL+K D L L  L+ L+++L  +      
Sbjct: 535  RDALSRLVPIENAAMKDRRVIQWDKDDLESLGLLKVDVLALGMLSALKRALALITDWRGP 594

Query: 594  -----------VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
                           +  IP DD  TY ++    T+G+FQ+ES   +  L  ++P    D
Sbjct: 595  PPGANGGAPISPSWRMQDIPRDDIATYEMIQEADTVGVFQIESRAQQSMLPRLKPSEFYD 654

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEK-----IVSIHPLIDPMLKETQGVIIYQEQVMQ 697
            ++  V++ RPGPI   +V+   K    +         +P ++  L+ T GV I+QEQVMQ
Sbjct: 655  LVVQVAIVRPGPISGGMVHPYLKQRDLQRRGLRPPPAYPALEQALERTLGVPIFQEQVMQ 714

Query: 698  IAQLLSGYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            I  + + +S  +AD LRRAM     K  + +  +R +    +    +  A  IF+ +  F
Sbjct: 715  ICMIAADFSGGDADELRRAMAAWKRKGGLQQFHQRIVGRMVEKNYDREFAERIFQQIKGF 774

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
             +YGF +SHA ++A+++Y +AW+K H P  FLAA +  +        +  QDAR+  +++
Sbjct: 775  GEYGFPESHAYSFALLAYLSAWLKCHEPAIFLAALLNSQPMGFYAPSQLVQDARRHAVEV 834

Query: 817  MPPSVNTPCVDFKVG--------------DNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
             P  V     D  +                  +   L  + G     A  I+ A A   F
Sbjct: 835  RPVDVGHSGWDCTLEPASPGSTPCAARSLQPAVRLGLRLVSGFSEAAADRIVAARAVSTF 894

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             SL+D   R     L+ + L+ L  A AL      R Q                    + 
Sbjct: 895  ASLDDLARRA---GLDPQALQVLARADALQSLAGHRRQQAWH---------------ASG 936

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
                 A   G    +  L        +     +          HPL + +P L + G + 
Sbjct: 937  QPRRTALLAGATHREDPLV-LPAPPEAEEITLDYASTQLTLRRHPLALLRPRLVQRGWRN 995

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              E  A   G  +    +VV +QQ +T KG+   +VT  +         +
Sbjct: 996  ARELGALKDGCRVWACGIVVGRQQPETAKGT--IFVTLEDETGSVNVIVW 1043


>gi|307289993|ref|ZP_07569918.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0411]
 gi|306498951|gb|EFM68444.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0411]
          Length = 1109

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 318/1031 (30%), Positives = 512/1031 (49%), Gaps = 54/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +                 ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108

Query: 130  RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
                  L E  +    L  +T  + G + + FF    Q A          F    L+V  
Sbjct: 109  ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                  ++ R   +       +LP VA      L++E+  A  VL ++  +  ++   + 
Sbjct: 161  -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTKEEGFAVTVLESIKENNQLNITSQT 219

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +     R    ++   L  A    V+   + +   +V  P+  + +        + 
Sbjct: 220  -PEIEGLNYLREAETTMEQILQIAGAEVVQNTIQLAGNCRVDIPLHQKLLPHFPVLANQT 278

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D + +
Sbjct: 279  AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
               N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +R
Sbjct: 332  CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN     
Sbjct: 392  REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +      +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LVP+ 
Sbjct: 452  LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP +D
Sbjct: 511  PGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNQTIRLNQIPLND 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+  RK
Sbjct: 570  ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +
Sbjct: 630  KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP 
Sbjct: 690  DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844
             F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  +++KG
Sbjct: 750  AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R QL  
Sbjct: 810  IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L++  +         +    ++          K   E+ +      R E E++ LG Y 
Sbjct: 870  GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918

Query: 964  SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            SGHP + +K   L K            +     +L   V + +  +T+KG ++ +V   +
Sbjct: 919  SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974

Query: 1023 PAKEYEANFFP 1033
                     FP
Sbjct: 975  TTGSISLTLFP 985


>gi|224476792|ref|YP_002634398.1| DNA polymerase III subunit alpha [Staphylococcus carnosus subsp.
            carnosus TM300]
 gi|222421399|emb|CAL28213.1| DNA polymerase III alpha subunit [Staphylococcus carnosus subsp.
            carnosus TM300]
          Length = 1067

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 342/1024 (33%), Positives = 537/1024 (52%), Gaps = 78/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H++Y LL  +L + +I+ K   +    +AITDTN L +  +F   +  AGI+P+ 
Sbjct: 3    AHLNIHTAYDLLNSSLKVPDIIQKAVQEGYETLAITDTNVLHAVPQFYDASIKAGIKPVF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +        T             VLL     G + L +L S + + +        
Sbjct: 63   GMTIYLSDGLTELET-------------VLLAKNEAGLKSLYQLSSAIKVQE----KYAT 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             + WL++     +I              F N +      +  F+K               
Sbjct: 106  PIEWLKKYQDNLVI-------------IFKNVTSEQLNLVHHFEKH-------------- 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D Y + Q    A   +L +V    + +L+ ED +    L A+  +  +   +       
Sbjct: 139  PDLYVDHQSSGAAERLDLNMVYMQEARYLNAEDADTLSALNAIKDNQTIDLVNTGSNHHA 198

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            H+           S   + +ENT  +A  C+  ++ H P+LP++   +        +  L
Sbjct: 199  HFYTQNEVNDLGLS--ADVIENTETLAELCTTEIEYHQPLLPQYQTPD----NSSSKTYL 252

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
             +     LE      +         YR+RL++E N+I  M +  YFLIV+D I +AK +N
Sbjct: 253  WHLLEQSLEKMEFDQS--------QYRERLEYEFNIITEMGYEDYFLIVSDLIHYAKTHN 304

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDPLR++LLFERFLNP+R++MPD DIDF   RR++VI
Sbjct: 305  VMVGPGRGSSAGSLVSYLLNITTIDPLRYNLLFERFLNPERVTMPDIDIDFEDTRREKVI 364

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ KYG   V+ I+TFG L AKA  RDVGR +    S +  + KLIP+     +S   
Sbjct: 365  QYVQEKYGDYHVSGIVTFGHLLAKAVARDVGRIMGFEESTLSEISKLIPSKLGITLSEAY 424

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  F+E    +   ++  E+S+KLEGL RH STHAAGI+I DRPL + VP++     
Sbjct: 425  --QNESFKEFVHRNHRHEKWFELSKKLEGLPRHTSTHAAGIIINDRPLYEHVPLFMGDTG 482

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   EK GL+K DFLGLK L+++ + +D + +   V +D+  IPFDD + + 
Sbjct: 483  --LLTQWTMTEDEKLGLLKIDFLGLKNLSIIHQIIDQVKKDLNVSIDIEAIPFDDPKVFE 540

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +L+   T G+FQLES G+RQAL+ +QP   EDI+A+ SLYRPGP++ I  Y  R++   K
Sbjct: 541  MLSRGDTTGLFQLESDGVRQALKRLQPQHFEDIVAMTSLYRPGPMEEIPTYITRRHVPSK 600

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP ++P+LK T GVIIYQEQ+MQIA   +G+S  EAD+LRRAM KK +  ++ +++
Sbjct: 601  VQYLHPDLEPILKNTYGVIIYQEQIMQIASKFAGFSYGEADILRRAMSKKNRAMLENERQ 660

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ GA++NG S+ ++  IF+L+ KFADYGF ++HA +Y+ I+Y  A++K HYP  F A 
Sbjct: 661  HFVDGANQNGYSEQLSKQIFDLILKFADYGFPRAHAVSYSKIAYTMAYLKVHYPNYFYAN 720

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +T  + N +K +    +A+  N++I+PP +N     ++     IY SL A+KGVG  + 
Sbjct: 721  ILTNSIGNDKKTELMVTEAKSMNLKILPPDINESHWYYRATSKGIYLSLGAVKGVGYQSV 780

Query: 851  RHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I+E    +  +    D   R+ ++   R++LESL+  GA D F  +R  LL +LD + 
Sbjct: 781  KAIVEERYENGKYKDFFDLTRRLPNRVKTRKLLESLILVGAFDQFNENRATLLSTLDQVL 840

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
              A  VE++       +F       + K + +        V  + E+  LGFY S HP++
Sbjct: 841  DGASNVEQDEL-----LFEF----VTPKESYQAKEELPDKVLSDFEKEHLGFYISKHPVE 891

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                I     + G  +         I +   +    + +T+ G  + +VT ++  K  + 
Sbjct: 892  ---KIFENKQLLGIYKLSNAKNNQPILV--QIDKMNRIRTKNGQPMAFVTLNDGTKTLDG 946

Query: 1030 NFFP 1033
              FP
Sbjct: 947  VIFP 950


>gi|226525340|gb|ACO70937.1| DNA polymerase III alpha subunit [uncultured Verrucomicrobia
            bacterium]
          Length = 1040

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 278/1032 (26%), Positives = 468/1032 (45%), Gaps = 68/1032 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++V L   S+ S L GA    +++ + A  + PA+A+ D + ++ +    +     G++ 
Sbjct: 12   TYVELHARSACSFLRGASHPESLVREAARLKLPALAVCDRDGVYGSARVHRDGKEHGVRA 71

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +L ++ Q                  + +LV+T  GY+ L ++++R  L      + 
Sbjct: 72   IVGAELTMEDQSV----------------VPVLVATRTGYRNLCQMITRAKLRGTKLDAP 115

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQR 188
             +    L E  +EGL+ LTG   GP+ RA        A       +  FG   ++V +QR
Sbjct: 116  -VRWDELGEF-SEGLVALTGDEEGPVRRALASKDRAAAMAATERLRAAFGGHNVFVEIQR 173

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    +      +  LA    LPL+ATN  L  + E+    DV     H T +    R  
Sbjct: 174  HLHRGEERENDALADLAEATGLPLLATNGVLHATREERGVLDVFSCARHHTNLESGGRHL 233

Query: 248  -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +LK+ + M  +F++ PEA+ NT  +A R  F L+      P+F     +     
Sbjct: 234  AYNAERHLKSPARMARLFANHPEAIANTERLADRLEFSLENLGYEFPKFPVSPGE----T 289

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++ L ++ + G   R                 +L  EL +I R+ FSGYFLIV D + +
Sbjct: 290  MDSVLYHRTMEGARNRYP-------AMTPKVLDQLHKELELITRLGFSGYFLIVWDLVNF 342

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ-D 425
             + +NI +  GRGS A S   YAL IT  DP+  +LLFERFL+  R + PD D+D    D
Sbjct: 343  CRNDNILI-QGRGSAANSAVCYALGITACDPVAGNLLFERFLSEGRKTWPDIDLDLPSGD 401

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+ VI+ V  +YG    A      + + ++A+R++G+AL      ++R  +L      +
Sbjct: 402  RRERVIQEVYRRYGRHGAAMTANVITFRGRSAMREIGKALNFAPDVLNRFSRLF----GN 457

Query: 486  PVSLQAIADDSRFREAR--LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                  +   ++ REA      P     +E+ +K+ GL RH   H+ G++I    LS +V
Sbjct: 458  GDFPHTMDLSAQLREAGIPPEHPRTKSAVELYRKIYGLPRHLGQHSGGMIICQGELSSVV 517

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+         V Q++       G+IK D LGL  +  +Q SL+    R   VDL+ +P 
Sbjct: 518  PLENASMPGRVVAQWDKDDCHDLGIIKVDLLGLGMMAAMQDSLEMCQARDRPVDLATMPM 577

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVY 661
            DD  TY L+    T+G FQ+ES      L  ++P    D++  V++ RPGPI       Y
Sbjct: 578  DDPATYDLMCRADTIGTFQVESRAQMATLPRLRPQKFYDVVVEVAIIRPGPIQGGLLHPY 637

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R  GKE +  IHP + P+L+ T GV ++QEQ++++A +++ +S SEA+ LRRA+    
Sbjct: 638  LARHAGKEDVEYIHPDLKPVLERTLGVPLFQEQILKVAMVMADFSGSEAEDLRRALSFHR 697

Query: 722  -KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             +E MD+   +  +G  + G+   I   I      FA YGF +SHA ++A+I+Y + WMK
Sbjct: 698  SQERMDQVCVKLRAGMVRKGVDPEIVDRIVHATQSFAVYGFPESHAISFALIAYASCWMK 757

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSL 839
             H   EF A  +  +           +DA++  ++    SV        VGD+  +   L
Sbjct: 758  VHRAPEFYAGLLNNQPMGFYSPATLVKDAKRRGLRTRAVSVLVSDWLCTVGDDDTLRLGL 817

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
              ++G+       I+     K F+SL DF  R     + +  L +L   GAL+     R 
Sbjct: 818  CYVRGLTKEDGERIVAERQRKSFESLMDFQLRT---AVPKPALRTLAKIGALNGLSEHRR 874

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
                 ++  ++             +++FA E      +  L      +   R   +    
Sbjct: 875  AAQWEVEIRREE------------DDLFARE----IREEELP-LKPMDPFERVRADYAGT 917

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
                  HP+ + +  L  +      +    + G  + +  MV+ +Q+  T KG  + +V+
Sbjct: 918  SLTTGPHPMALVRDRLPDL--WRAADLPLAVNGQRLSIGGMVICRQRPGTAKG--VVFVS 973

Query: 1020 FSEPAKEYEANF 1031
              + +    A  
Sbjct: 974  LEDESGVANAIV 985


>gi|171910611|ref|ZP_02926081.1| DNA polymerase III, alpha subunit [Verrucomicrobium spinosum DSM
            4136]
          Length = 1032

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 287/1032 (27%), Positives = 482/1032 (46%), Gaps = 66/1032 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SFV L   +++S L GA S   ++ + A      +AITD +  + +     K    G++ 
Sbjct: 2    SFVELHARTAFSFLRGASSPEEMMTRAADLGMDCVAITDRDGYYGSARAHYKGKELGLRA 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G ++ ++ +                  + LLV+T +GYQ L  L++R  L    K   
Sbjct: 62   ITGMEITMEDETV----------------LPLLVATRQGYQNLARLMTRAKLRT-TKGQS 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
            R+  S L E   EG+++L+G   GP+ RA   N +  A   +    ++FG   +++ LQR
Sbjct: 105  RVLWSELPE-HAEGVVVLSGDEEGPVQRALQQN-AAEAPAVVEKLCRIFGRNQVWMELQR 162

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQKDRP 246
            HR   +  R  Q+  LA   +LPL+A+N      +E     D    + H T + +     
Sbjct: 163  HRMRGETLRNRQIRDLAELCKLPLLASNGPCHARQEGRMLMDAFTCLRHHTHLDAAGLLL 222

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  +LKN  +M ++F+DLPEA++NT  ++ +  F L+      P +      D    
Sbjct: 223  APNSQRHLKNHGDMKALFADLPEAMDNTRRLSDQLEFGLEHLGYEFPCYDVPPGHDQ--- 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++ LR     G   R   G  A+       R +L+ EL++I+R+KFSGYFLIV   +++
Sbjct: 280  -DSYLRELTYEGARRRFHGGVNAQ------VRAQLEKELDLISRLKFSGYFLIVWSLVKY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ-D 425
            A  ++I V  GRGS A S   Y+L IT  DP+   LLFERFL+  R S PD D+D    D
Sbjct: 333  ACDSDILV-QGRGSAANSAVCYSLGITHADPIAGKLLFERFLSEGRNSWPDIDLDLPSGD 391

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR++VI+ +  +Y     A      + + ++A+R++G+ L +P   + R   L  N    
Sbjct: 392  RREQVIQELYRRYAPYGAAMTANVITYRGRSAMREMGKVLNLPEDVMGRFSDLYAN--GD 449

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                  + D  R     +  P +  ++ +  ++ GL RH   H+ G+V+  + L  +VP+
Sbjct: 450  FPHTLQLKDQIRQAGLPMDHPRLVAMVRLYHQVYGLPRHLGQHSGGMVLCTKGLDSIVPL 509

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV--KVDLSLIPF 603
                     V Q++    E  G+IK D LGL  + +LQ SL     RG      L  IP 
Sbjct: 510  EPATMPGRVVVQWDKDDCEDLGIIKVDLLGLGMMAVLQDSLTLCKARGREGPYGLHEIPK 569

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662
            DD  TY ++    T+G+FQ+ES      L  ++P+C  D++  V++ RPGPI   +V+  
Sbjct: 570  DDPATYEMMQKADTIGVFQIESRAQMATLPRLKPECFYDLVIEVAIIRPGPIVGNMVHPY 629

Query: 663  -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R+ G+EKI  IH   + +L+ T GV ++QEQ++++A +++G+S  EA+ LRRAM    
Sbjct: 630  IRRRQGREKIDFIHAEFEDILQRTLGVPLFQEQLLRMAMVIAGFSGGEAEELRRAMSFHR 689

Query: 722  K-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              E M K  ++  +   + G+++ +   I   ++ FA YGF +SHA ++A+++  + W+K
Sbjct: 690  SEERMHKVMDKLRAAMEERGVAQEVQEKITACISSFALYGFPESHAISFAILANASVWLK 749

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSL 839
             H  VEF A  +  +           +DA+Q  ++I P  V    V   V D++ +   L
Sbjct: 750  AHRAVEFYAGLLNNQPMGFYSTSTLVRDAKQHGLRIRPACVVVSDVLCTVEDDQTLRLGL 809

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
               +G+   +   I+   A +P+  L+DF  R    K  RRV   L  AGAL+  G  R 
Sbjct: 810  NQFRGLSRGSQERIIAERAVRPWRDLDDFLRRSGLDKKERRV---LAKAGALNQLGLHRR 866

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
              L  ++  ++           +   +F                   N+  R   + +  
Sbjct: 867  SALWQVELARQEEDLFTPREVQQEMPLF-----------------PMNAMERLNADYQTQ 909

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
                  HP+  ++  L  +      E      G  I +  +V+ +Q+  T KG    +++
Sbjct: 910  RLTTGPHPMAHHRVRLPHL--WPACELANGRHGQRIFVGGLVICRQRPGTAKGHM--FIS 965

Query: 1020 FSEPAKEYEANF 1031
              +      A  
Sbjct: 966  LEDETGIANAFV 977


>gi|300087544|ref|YP_003758066.1| DNA polymerase III subunit alpha [Dehalogenimonas
            lykanthroporepellens BL-DC-9]
 gi|299527277|gb|ADJ25745.1| DNA polymerase III, alpha subunit [Dehalogenimonas
            lykanthroporepellens BL-DC-9]
          Length = 1045

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 269/1047 (25%), Positives = 471/1047 (44%), Gaps = 77/1047 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  L  HS YS  +GA SL  ++ +       A+AITD +NL  A+ FS  + +  +  
Sbjct: 2    SYAELHCHSYYSFHDGASSLEELITRSGELGYRALAITDHDNLCGAMRFSHLSRSMNLSG 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG ++ ++                    + LL    EGY+ L  L++  +     + S 
Sbjct: 62   IIGAEVTVE----------------GGYHLTLLAENQEGYRNLCRLITLGH-ETGERNSP 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            +I  + L      GLI L+G   G +         + A + +  +++ FG D  ++ LQ 
Sbjct: 105  QIPSARLAA-HAAGLIALSGCPRGELSLLATAGCDERARQLVRQYQEWFGSDNYFIELQN 163

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRP 246
            +  + D  R  ++V+LA     P+VAT N+ +   E +   D L+AV    ++ +     
Sbjct: 164  NLVFGDAERNRRLVRLAGETGAPVVATGNAHYHLRERHRLQDCLVAVRSCKSLEACHHER 223

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R   + +L+  +E+ + F+  PEA+ NTV IARRC F L   +                 
Sbjct: 224  RPNSEFHLRPLAEIEARFAGCPEAVANTVRIARRCEFNLTAQSGYDLP---DYPAPAGFT 280

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+ L    +              G      R+RLD E  ++AR + +G+ L+  D I+ 
Sbjct: 281  PESYLEKLCLE-------AAVRRYGSITAAVRERLDQEFRLVARHRLAGFLLLYHDVIRL 333

Query: 367  AKKNN--------------IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
             ++                 P G GRGS    +  Y + ++ IDPL++ L  ERFL  D 
Sbjct: 334  GREIMVEQGLTTADVPLEENPPGRGRGSSVSLLIGYLIGLSHIDPLKYGLSLERFLPEDA 393

Query: 413  -MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
               +PD D+DF +  R+E+I     K+G +  A   T  + Q K A+RD+G+ L +P  +
Sbjct: 394  LGCVPDIDLDFPRSIREELILRTHRKWGWKYAALTGTIATYQIKGAVRDLGKVLSLPPEE 453

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            VD+L + +    A  +  + ++  SRFR+   A P    L+ ++ +L+G  ++   H  G
Sbjct: 454  VDQLARYVEWGSAAKLK-EKMSRASRFRDRVDA-PGWRDLIALAAELDGFPKYLGQHPGG 511

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            ++I   PL+ +VP+ R   +   V Q++   I+ AG +K DFL L  L+ +Q++++ + +
Sbjct: 512  MIISSVPLTDIVPVQRGAMAGRYVCQWDKDSIDDAGCVKIDFLALGALSQMQEAVELIRR 571

Query: 592  RG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            R    +D+S I F D   Y +L    T+GIFQ+ES+   Q +  ++P  + D+   V   
Sbjct: 572  RTGRFIDMSRIDFADPAVYDMLCRGDTIGIFQVESAAQMQTITRLKPRNLLDMAHEVGAV 631

Query: 651  RPGPIDNIVVYNNRKNG--KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPG   N  V         ++ +V  H L    L+ T G++++Q+QV Q+A  ++G S S
Sbjct: 632  RPGVGVNGGVQEYLARRAGRKPVVYNHSLERRALERTLGIVLFQDQVNQLAIDVAGLSPS 691

Query: 709  EADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             AD LRRA   +  +E + +    F+SGA++ G+  + A  ++        Y F +SHA 
Sbjct: 692  VADQLRRAFSRRHNQEMLSRYHRMFMSGAAERGVGVSAAEAVWRKF--NGQYMFPESHAF 749

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            A+ V +YQ +W+K +YP+EF  A    +      ++   +DA +  I +  P +N     
Sbjct: 750  AFGVTAYQASWLKLYYPLEFYVAIFNQQPMGFYNLETLKEDAGRHGIGVKGPDINLSAAG 809

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
              + +  I      + G+G + A  I+ A      +  + DF  R     + +    +L 
Sbjct: 810  CTIDEGAIRLGFRQVTGLGQSAAEAIVSARTRGGDYRDVGDFLER---SGVLQETALALA 866

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AGA D    +R Q+   +    +               +F        D + LE     
Sbjct: 867  GAGAFDSLESNRRQVKWEIGLRYRPVNSQ----------LF-LPLPVRQDMVELENPGHW 915

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                + + E R+LG + +GH +   +P      +    E  A   G  +  A +V+ +Q+
Sbjct: 916  ---EKMQEEYRILGLFPAGHIMAGLRPRF-GGSVSTSREITAMKDGAEVTTAGLVIRRQR 971

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   ++ ++T  +         FP
Sbjct: 972  PH----RKVVFITLEDEFGHIPLMVFP 994


>gi|315038186|ref|YP_004031754.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL 1112]
 gi|312276319|gb|ADQ58959.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL 1112]
          Length = 1035

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 326/1024 (31%), Positives = 528/1024 (51%), Gaps = 44/1024 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    + +++         A+ + D N  +  + F + A   GI+P++G 
Sbjct: 6    LQNLSSFTLLDSPTKVADLIKTAKEKGYSAVGLADINVTYGLVNFYEIAKKEGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
            Q+ ++          G         +++   T  GY  L+ L S + L  + G+    + 
Sbjct: 66   QIRLN----------GLIDSTQKYDLLVFAKTNAGYHNLLRLSSAINLLTENGQNDKILT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +   + L+++   +   +    F  + Q+    L   KK+  D  Y+ +   +  
Sbjct: 116  LKELTKYLEDLLVIIPANTRSELV-YLFETNQQLGSDYLRDLKKIVPD-FYLGVYAAKNA 173

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS-QKDRPRVTPD 251
             +     V  L+   +LPLVA  +S +L   D      L A+     +       +    
Sbjct: 174  -QDYLDYVRSLSKQFDLPLVAVEDSEYLRPRDQFLQKTLRAIRSGQKMQDMVPLAKQDGS 232

Query: 252  HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            HY+ +  +M+  +   DL +A+ NT +IA +C+  +    P+LP++ + +        E 
Sbjct: 233  HYMVDAEQMLERYHRFDLDDAVNNTAKIAEKCNAEVIFQKPVLPKYHQNKFP----TSEE 288

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L   A  GL+ R  Q          +Y++RL++EL +I +M F  YFLIV D I +  +
Sbjct: 289  YLHYLAQTGLQARFGQ-----EKIPAEYQKRLNYELRIINQMGFDDYFLIVWDVINYCHR 343

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS  GS+ +Y+L IT++DPL++ LLFERFLNP R  MPD D+D     RD 
Sbjct: 344  VKITTGPGRGSACGSLVSYSLRITEVDPLKYHLLFERFLNPARHEMPDIDLDIPDIHRDT 403

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +   +V++  + IP         
Sbjct: 404  VIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEVNKWVRAIPFSKGKMTLK 463

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            QA  +    R    A      L   +  LEGL RH S HAAG+VI D  ++ +  +    
Sbjct: 464  QAYEESRELRLLVDATEENKLLFRTAMALEGLPRHYSIHAAGLVISDDSIAGISGLQ-AG 522

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
               +PVTQ   K++E  GL+K DFLGL+ LT+L   LD +  +GVK+D + IP +D +T 
Sbjct: 523  PLGIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILDLVRSQGVKIDPNKIPLNDAKTL 582

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T  IFQ ES G+R+ L  + PD  ED++A+ +LYRPGP+ NI  +  RKNGKE
Sbjct: 583  ELFQQGKTDAIFQFESEGIRRVLRQLHPDNFEDLVAVNALYRPGPMQNIDTFVARKNGKE 642

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +    P +  +L+ T G+++YQEQVMQ AQ+L+ +SL EAD+LRRAM KK ++ ++++K
Sbjct: 643  PVRYPDPSLKQILQPTYGILVYQEQVMQTAQILARFSLGEADILRRAMSKKKQDVIEQEK 702

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FI+G  KNG SK +   ++  + +FA+YGFN+SHA AY  I++  A++K HYP  F  
Sbjct: 703  SKFIAGVVKNGHSKEVGERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPAAFYT 762

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +        K +++   A++ NI+++ P +N   +++ + +N I   L AIKG+    
Sbjct: 763  AMLN--SSTSAKAQQYVMQAQEANIRVLTPDINHSQLEYTLQNNNILVGLKAIKGLRVDF 820

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A+ I  A+  KP+ SL DF  R+DSK L    +E+L+ AGA D    +R +LL +  +I 
Sbjct: 821  AKEI--AANTKPYKSLSDFLRRIDSKFLQIDAIEALIMAGAFDQIEDNRNELLANCKDII 878

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               Q   +N      ++             L+   +  +  + E E++VLGF  +  PL 
Sbjct: 879  ANVQLTGQN-----ISL-----SEILGDAPLKPAEIPTNGEKAEMEEKVLGFATTTTPLV 928

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K       +      G  +     ++S ++ +T+    + +  F++ + + E 
Sbjct: 929  AVQKYAQKFNALPLNQFQFNESGIGV---GKLMSLKRIRTKNDKTMAFAGFADSSSQQEV 985

Query: 1030 NFFP 1033
              FP
Sbjct: 986  IIFP 989


>gi|78067625|ref|YP_370394.1| error-prone DNA polymerase [Burkholderia sp. 383]
 gi|77968370|gb|ABB09750.1| DNA polymerase III, alpha subunit [Burkholderia sp. 383]
          Length = 1068

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 261/1049 (24%), Positives = 430/1049 (40%), Gaps = 67/1049 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA     ++++        IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASHAEELVERAFELGYRGIAITDECSLAGAPRMHVAAKAKGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             +IG   D+   +       G  P P    +VLL    EGY  L EL+S    +   K +
Sbjct: 69   LVIGSYFDVTPDE----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMAAPKGT 123

Query: 129  VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             ++    L     E   L  +    +  +        + V + ++  F+  FG+R  + L
Sbjct: 124  YQLTSRMLSAPPAEFAHLRGIPDCFAILVPTY--PVRADVLDAQVAWFRTTFGERARLGL 181

Query: 187  -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             Q  R  D  +  ++        + +VA  +         E  DV+ A+           
Sbjct: 182  VQLQRALDGAQREEIRAAGERRGVRIVALGDVTMHRRSCKELQDVMTAIRVGMP-----V 236

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                          +              +E               L      E      
Sbjct: 237  SECGYALAPNAEQHLRGRNRIGNLYSPAEIEETCTILDTCDFKLDTLRYEYPDEIVPKGL 296

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + L  + +AG   R  QG        +   +++ +EL++IA++ +  +FL V D ++
Sbjct: 297  TPTSYLEQETMAGAATRYPQGV------PEKVSKQIRYELDLIAQLSYEPFFLTVYDIVK 350

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  NI    GRGS A SV  + L IT+++P + ++LFERF++ +R   PD D+DF   
Sbjct: 351  YARSQNIL-CQGRGSAANSVVCFCLGITEVNPEQSTMLFERFISAERGEPPDIDVDFEHQ 409

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+++  KYGH R A      + + +  LR+ G+AL +    VDR+ K        
Sbjct: 410  RREEVIQHIYEKYGHNRAALAAAVSTYRPRGVLRETGKALGVDPMLVDRVAKAHRWFDGS 469

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               LQ  +            P +     ++ +L    RH S H+ G VI    L++LVP+
Sbjct: 470  RDLLQQFSTI----GLDPETPLILAWARLAARLLNFPRHLSQHSGGFVISRGKLTRLVPV 525

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDL 598
                     V Q++   +E  GL+K D L L  L+ L ++ D                 L
Sbjct: 526  ENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMRTAWRGPPEPDGEPFTL 585

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID-- 656
              IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   
Sbjct: 586  KHIPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLRPQTYYDLVIEVAIVRPGPIQGG 645

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  Y  R+ G EK+      + P L+ T GV I+QEQVMQIA + +G++  EAD LRRA
Sbjct: 646  AVHPYLKRRQGIEKVSYPKEELKPALERTYGVPIFQEQVMQIAMIAAGFTPGEADQLRRA 705

Query: 717  MGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M     K  +++   + + G  +       A  IFE +  F DYGF +SHAA++A ++Y 
Sbjct: 706  MAAWKRKGNLEQYHRKIVDGMRERDYPPDFAEQIFEQIKGFGDYGFPESHAASFAKLAYA 765

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---- 831
            ++W+K H P  FLAA +  +        +  QDA++  +Q++P  V     D  +     
Sbjct: 766  SSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHGVQVLPIDVTQSNWDASLEALPD 825

Query: 832  ------DNRIYYSLAAIKGVGT-TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
                     +   L+ ++G+G     R     +A  PFD+++    R    +L RR LE+
Sbjct: 826  QPPPHGQPAVRLGLSLVRGLGEAAARRIEAARTAAGPFDTVDTLARRA---QLERRDLEA 882

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  A AL      R   L             +        ++ A      ++K       
Sbjct: 883  LAAANALATLAGHRRDALW------------QAVAAAPERDLLATAPIDEAEK---PALG 927

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              + +     +    G     HP+ + +P LR   +    E      G   R   +V ++
Sbjct: 928  APSEADDILADYHTTGLTLDRHPVALLRPELRARRLSSAAELHDRPDGRLARACGLVTAR 987

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q   T KG  + ++T  +          P
Sbjct: 988  QMPGTAKG--VMFMTLEDETGCVNLIVRP 1014


>gi|255532292|ref|YP_003092664.1| DNA polymerase III subunit alpha [Pedobacter heparinus DSM 2366]
 gi|255345276|gb|ACU04602.1| DNA polymerase III, alpha subunit [Pedobacter heparinus DSM 2366]
          Length = 1045

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 254/1035 (24%), Positives = 442/1035 (42%), Gaps = 71/1035 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV S++S L GA   + ++++ AA     IAITD N L   +     A   G+  I
Sbjct: 3    YTELQVTSNFSFLRGASHPDEMVEQAAAYGYSKIAITDRNTLAGIVRAHVAAKKIGMSII 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
              C+ D+                   PS++   +  + Y RL  L++   L  + K S  
Sbjct: 63   PACRFDLIDG----------------PSLLAYPTDRDAYSRLSGLLTTGNLRAE-KGSCH 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-H 189
            +    + E   +G+  +    +    R   F+  +  +K L  +++  G  +Y+   R +
Sbjct: 106  LYKKDVYE-HAKGIKFIVVPPASLNTR---FDFEESFKKALAEYREALGSDVYLGAMRLY 161

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRV 248
             G D  +  ++ QLA   ++P+VATN+  +   +  E  D+L  V     +         
Sbjct: 162  NGDDMKQLYRLSQLAKLLDMPMVATNDVHYHEPKRRELQDILTCVREKCTIQHAGFLLHQ 221

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + YLK   EM  +F   P+A+  T EIA  C F L     + P  I  +     + + 
Sbjct: 222  HAERYLKPMEEMQRLFRQYPDAITRTQEIAEACQFSLDSLKYVYPEEITSDG----RTQM 277

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             EL   A  G   +            +     +  EL  + +   + YFL V DF+++A+
Sbjct: 278  EELTFLAWQGANEKFNH------AIPEKVEATIKAELAFMEKRNLAAYFLTVHDFVRFAR 331

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I    GRGS A SV  Y L IT +DP +F LLF RF++  R   PD D+DF  +RR+
Sbjct: 332  SQRIL-CQGRGSAANSVVCYCLGITSVDPSKFRLLFARFMSEARDEPPDIDVDFEHERRE 390

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  KYG ER A + T   L  K A+RDV +A+ +    V+RL   +         
Sbjct: 391  EVIQYIYQKYGRERAAIVATVTQLHFKGAVRDVAKAMGLSVDMVNRLSASVWRHTEVLDD 450

Query: 489  LQAIAD--DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             Q I    D   R  R              ++ G  R    H  G VI    LS L P+ 
Sbjct: 451  QQLIEQGFDPSDRHLRKTLELTC-------QMIGFPRQLGQHTGGFVITQGKLSDLCPVM 503

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDD 605
                 D    ++N   I+  G +K D L L  LT ++K+ D +       + L+ +P DD
Sbjct: 504  NARMEDRTCIEWNKDDIDALGFLKVDVLALGMLTCIRKAFDLVKAHYGLDLTLANVPQDD 563

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
               Y +++   T+G+FQ+ES      L  ++P C  D++  V++ RPGPI   +V+    
Sbjct: 564  PAVYEMISHADTIGVFQIESRAQMSMLPRLKPKCFYDLVIEVAIVRPGPIQGDMVHPYLR 623

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R+NG+E +      ++ +L  T GV ++QEQ M+IA +  G++ +EAD LRR+M      
Sbjct: 624  RRNGEEPVEYPSKELEEILDRTLGVPLFQEQAMEIAIMAGGFTPAEADELRRSMASFKAN 683

Query: 724  EM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
                  +++ + G    G  +  +  IF+ L  F  YGF +SHAA++A++ Y ++W+K +
Sbjct: 684  GKLHLYEKKLVDGMVARGYEEGFSRRIFKQLQGFEGYGFPESHAASFALLVYVSSWLKCY 743

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-----IYY 837
            YP  F  A +        +  +   DA++  +++ P  +N    D  + +       +  
Sbjct: 744  YPDVFATALLNSLPMGFYQPAQLVIDAQKHGVEVKPVDINLSGWDNLLEEKAGKYWVVRL 803

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
                + G+     + ++   +   F       + +    + +  LE L  A A    G  
Sbjct: 804  GFRQVSGLREEDLQALIAGRSGGYFS-----VNALRDAGVPQAALEKLADADAFRSIGLD 858

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R Q L  +  +            ++   +F  +      +  +       +      +  
Sbjct: 859  RRQALWEVSAL-----------GDRPVALFEGQPSESVTETQV-ALPFMTAGEHVVQDYA 906

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
                    HP+   +  L+ + +   +E      G+ +++A +++ +Q+  T  G  I +
Sbjct: 907  ATSLSLKAHPVSFVREKLKLLRVLSAQEITEAKDGDFVKVAGLILVRQRPGTASG--ICF 964

Query: 1018 VTFSEPAKEYEANFF 1032
            +T  + +       F
Sbjct: 965  ITIEDESGTVNLVVF 979


>gi|325956638|ref|YP_004292050.1| DNA polymerase III subunit alpha [Lactobacillus acidophilus 30SC]
 gi|325333203|gb|ADZ07111.1| DNA polymerase III, alpha subunit [Lactobacillus acidophilus 30SC]
          Length = 1035

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 326/1024 (31%), Positives = 528/1024 (51%), Gaps = 44/1024 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    + +++         A+ + D N  +  + F + A   GI+P++G 
Sbjct: 6    LQNLSSFTLLDSPTKVADLIKTAKEKGYSAVGLADINVTYGLVNFYEIAKKEGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
            Q+ ++          G         +++   T  GY  L+ L S + L  + G+    + 
Sbjct: 66   QIRLN----------GLIDSTQKYDLLVFAKTNAGYHNLLRLSSAINLLTENGQNDKILT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +   + L+++   +   +    F  + Q+    L   KK+  D  Y+ +   +  
Sbjct: 116  LKELTKYLEDLLVIIPANTRSELV-YLFETNQQLGSDYLRDLKKIVPD-FYLGVYAAKNA 173

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS-QKDRPRVTPD 251
             +     V  L+   +LPLVA  +S +L   D      L A+     +       +    
Sbjct: 174  -QDYLDYVRSLSKQFDLPLVAVEDSEYLRPRDQFLQKTLRAIRSGQKMQDMVPLAKQDGS 232

Query: 252  HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            HY+ +  +M+  +   DL +A+ NT +IA +C+  +    P+LP++ + +        E 
Sbjct: 233  HYMVDAEQMLERYHRFDLDDAVNNTAKIAEKCNAEVIFQKPVLPKYHQNKFP----TSEE 288

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L   A  GL+ R  Q          +Y++RL++EL +I +M F  YFLIV D I +  +
Sbjct: 289  YLHYLAQTGLQARFGQ-----EKIPTEYQKRLNYELRIINQMGFDDYFLIVWDVINYCHR 343

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS  GS+ +Y+L IT++DPL++ LLFERFLNP R  MPD D+D     RD 
Sbjct: 344  VKITTGPGRGSACGSLVSYSLRITEVDPLKYHLLFERFLNPARHEMPDIDLDIPDIHRDT 403

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +   +V++  + IP         
Sbjct: 404  VIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEVNKWVRAIPFSKGKMTLK 463

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            QA  +    R    A      L   +  LEGL RH S HAAG+VI D  ++ +  +    
Sbjct: 464  QAYEESRELRLLVDATEENKLLFRTAMALEGLPRHYSIHAAGLVISDDSIAGISGLQ-AG 522

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
               +PVTQ   K++E  GL+K DFLGL+ LT+L   LD +  +GVK+D + IP +D +T 
Sbjct: 523  PLGIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILDLVRSQGVKIDPNKIPLNDAKTL 582

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T  IFQ ES G+R+ L  + PD  ED++A+ +LYRPGP+ NI  +  RKNG E
Sbjct: 583  ELFQQGKTDAIFQFESEGIRRVLRQLHPDNFEDLVAVNALYRPGPMQNIDTFVARKNGNE 642

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ ++++K
Sbjct: 643  PVRYPDPSLKQILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQEK 702

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FI+G  KNG SK +   ++  + +FA+YGFN+SHA AY  I++  A++K HYP  F  
Sbjct: 703  SKFIAGVVKNGHSKEVGERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPAAFYT 762

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +        K +++   A++ NI+++ P +N   +++ + +N I   L AIKG+    
Sbjct: 763  AMLN--SSTSAKAQQYVMQAQEANIRVLTPDINHSQLEYTLQNNNILVGLKAIKGLRVDF 820

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A+ I  A+  KP+ SL DF  R+DSK L    +E+L+ AGA D    +R +LL +  +I 
Sbjct: 821  AKEI--AANTKPYKSLSDFLRRIDSKFLQIDAIEALIMAGAFDQIEDNRNELLANCKDII 878

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               Q   +N      ++             L+   +  +  + E E++VLGF  +  PL 
Sbjct: 879  ANVQLTGQN-----ISL-----SEILGDAPLKPAEIPTNGEKAEMEEKVLGFATTTTPLV 928

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K       +      G  +     ++S ++ +T+    + +  F++ + + E 
Sbjct: 929  AVQKYAQKFNALPLNQFQFNESGIGV---GKLMSLKRIRTKNDKTMAFAGFADSSSQQEV 985

Query: 1030 NFFP 1033
              FP
Sbjct: 986  IIFP 989


>gi|330399560|ref|YP_004030658.1| DNA polymerase III subunit alpha [Burkholderia rhizoxinica HKI 454]
 gi|312170297|emb|CBW77336.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Burkholderia
            rhizoxinica HKI 454]
          Length = 1091

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 280/1050 (26%), Positives = 446/1050 (42%), Gaps = 73/1050 (6%)

Query: 1    LTQYLEKS-----PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
            L   +EK      P +  LQ  S++S L GA     ++ + A     A+AITD  ++   
Sbjct: 44   LANPMEKPANASLPEYAELQCASNFSFLYGASHPEELVARAAQLGYTALAITDECSVAGV 103

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            +    +A   G+  I+G Q  +                     +  L    +GY  L E 
Sbjct: 104  VRAHLEAKKVGLPLIVGAQFRLAQGQAAPAMA-----------LSALAMNRDGYGNLCEF 152

Query: 116  VSRMYLLDQGKQSVRICLSWLQEI---GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
            ++   +    K + R+    L         G   L+                   E +L 
Sbjct: 153  ITLGRMRGD-KGTYRLSCDDLAHADAVDRHGC-ALSHCL------VILHPDYPAHEAQLT 204

Query: 173  TFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
                 FG R+ V L  H +  D      V ++A  H + +VAT              DV+
Sbjct: 205  WAAPHFGSRIAVALTLHAQAMDDLHRGVVQRVAARHGVRVVATGAVRMHVRSRKPLQDVV 264

Query: 232  MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
             A+     V       + P+     R+ +        + LE TV +AR+C+F L      
Sbjct: 265  TAIRLGQSV-SACGYHLAPNAQQHLRARLRLANVYPRDTLEATVHLARQCTFSLDELRYE 323

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             P  +              LR +A  G   R   G           +Q+L+ EL +IA +
Sbjct: 324  YPEELVPNG----HSATTYLREQAYLGAHRRFPNG------IPMTVQQQLEHELALIATL 373

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            ++  YFL V D + +A+   I    GRGS A S   Y L IT++DP R +LLFERF++ +
Sbjct: 374  RYEPYFLTVYDIVHFARSQGIL-CQGRGSAANSAVCYCLGITEVDPARSNLLFERFVSRE 432

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD DIDF   RR+EVI+Y+  KYG ER A      + + ++ALRD G+AL +    
Sbjct: 433  RNEPPDIDIDFEHQRREEVIQYLYRKYGRERAALTAAVTTYRPRSALRDAGKALGIDPLI 492

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            VDR+ K          +   +             P +++   ++  L G  RH S H+ G
Sbjct: 493  VDRVAKSHQWFD----TSAQLLKRFEDAGLDTCAPIIEQWATLAATLLGFPRHLSQHSGG 548

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-A 590
             VI    LS+LVP+      D  V Q++   I+  GL+K D L L  L++++++L  +  
Sbjct: 549  FVISRGKLSRLVPIESAAMPDRSVIQWDKNDIDALGLLKIDILALGMLSVIRRALALVAH 608

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            QRG   +L  IP +D  TY +++   T+G+FQ+ES      L  ++P C  D++  V++ 
Sbjct: 609  QRGEPFELHDIPAEDAATYEMISRADTVGVFQIESRAQMSMLPRLRPRCFYDLVIEVAIV 668

Query: 651  RPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+   +V+    R+ G E +      +   L  T GV I+QEQVMQ+A L +G++  
Sbjct: 669  RPGPVQGGMVHPYLRRREGVEPVTYPSEAMRTALARTLGVPIFQEQVMQVAMLAAGFTAG 728

Query: 709  EADVLRRAMGKKI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            EAD LRRAM     +  +++  ER + G    G  +  A +IF  +  F +YGF +SHAA
Sbjct: 729  EADQLRRAMAAWRSQGGLEQYYERIVHGMVTRGYDRAFAESIFAQIQGFGEYGFPESHAA 788

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            ++A++ Y +AW+K H P  FL A +  +        +  QDAR+  ++++P  V     D
Sbjct: 789  SFALLVYVSAWLKCHAPAAFLCALLNSQPMGFYTPSQLVQDARRHGVKVLPVDVTISDWD 848

Query: 828  FKVGDNR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
              +  +     +   L+ I+G+    A  I  A A +PF  + D   R    +L RR L+
Sbjct: 849  STLQGHSLEAPVRLGLSLIRGLAEDAAARIELARAVRPFADVTDLARRA---QLTRRDLQ 905

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
            +L  A AL     +R   L            +     +     FA               
Sbjct: 906  ALASANALASLAGNRRAALWHALAAVPDKDLLRAASDDDVTPAFA--------------- 950

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                      ++ R LG     HPL + +  L +  +           G   R   +V  
Sbjct: 951  -PLTPGQAIAHDYRALGLTLERHPLALLRAQLLQRRLLPAVVLQRYRDGQLARACGLVTV 1009

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +Q+  T KG  + +VT  + +       +P
Sbjct: 1010 RQRPGTAKG--VLFVTLEDESGHTNVIIWP 1037


>gi|326381920|ref|ZP_08203613.1| error-prone DNA polymerase [Gordonia neofelifaecis NRRL B-59395]
 gi|326199346|gb|EGD56527.1| error-prone DNA polymerase [Gordonia neofelifaecis NRRL B-59395]
          Length = 1096

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 277/1038 (26%), Positives = 466/1038 (44%), Gaps = 73/1038 (7%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +  +  L  HS+YS L+GA     ++++        +A+TD +  +  + F++ A   
Sbjct: 67   TSTVPYAELHAHSAYSFLDGASMPEAMVEEAQRLGLRGLALTDHDGFYGVVRFAEAAREF 126

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G+  + G +L ++         +     P    + +L   AEGY+RL  +++  ++    
Sbjct: 127  GMPTVFGAELSLERDS-----ARAGAVDPPGEHLQVLARRAEGYRRLSRVIADAHMTGGE 181

Query: 126  KQSVRICLSWLQEIGTEG-LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
            K  +R   + + E    G  ++LTG   G + RA      + A   L      FG   + 
Sbjct: 182  KGLLRYDAAAITEHAAAGDWLILTGCRKGAVRRALDRGGKRAAGAALGEMIDRFGIGNVA 241

Query: 184  VNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVS 241
            V L       D  R + +  LA  H +P VAT  + F + E+      + A+   T + +
Sbjct: 242  VELSPGPGSDDDERNAILASLAAQHRVPTVATTGAHFAAPENGRLATAMAAIRARTDITT 301

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                       +L+N  EM+ +     EA++N V  A  C+F L++ AP LP F   +  
Sbjct: 302  IDGWMPGVGGAHLRNGDEMLRLMPAHREAIDNAVAFADECAFSLKLIAPSLPPFDVPDG- 360

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                 E   LR     G       G         D  +++D EL +I  + F GYFL+V 
Sbjct: 361  ---HSESTWLRELTERGAR-----GRYGTREQRPDAYRQIDHELAIIEALTFPGYFLVVH 412

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + + K+N+I    GRGS A S   YAL IT++DP+   LLFERFL+P+R   PD D+D
Sbjct: 413  DIVSFCKENDIL-CQGRGSAANSAVCYALGITNVDPVANHLLFERFLSPERDGPPDIDVD 471

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
               DRR+E I++V  K+G    AQ+    + + ++A+RD  RAL     Q D   K+  +
Sbjct: 472  IESDRREEAIQHVYAKHGRSHSAQVANVITYRGRSAVRDTARALGYAPGQQDAWSKIPDS 531

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
             P                         D + E++ ++  L RH   H+ G+VI DRP++ 
Sbjct: 532  AP-------------------------DDVREMAAQISSLPRHLGIHSGGMVICDRPIAD 566

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
            + P      +   V Q++       GL+KFD LGL  L+ L   +D + +   V VDL+ 
Sbjct: 567  VCPTEWARMAGRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYMIDLVDEHKGVTVDLAR 626

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NI 658
            +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++
Sbjct: 627  LDLTEEAVYDMLCRADSVGVFQVESRAQMATLPRLKPRTFYDLVVEVALIRPGPIQGGSV 686

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM- 717
              Y  R+NG E     HP ++  L  T G+ ++QEQ+MQ+A+ ++G+  +EAD LRRAM 
Sbjct: 687  HPYIRRRNGLEAPNCDHPSMEDALGRTLGIPLFQEQLMQVARDVAGFGAAEADQLRRAMG 746

Query: 718  GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
             K+  E+M + ++RF  G  + NGI+  +A  I+E +A FA++GF +SH+ ++A + + +
Sbjct: 747  SKRSPEKMQRLRQRFYDGMRETNGITGDLADRIYEKMAAFANFGFPESHSQSFASLVFYS 806

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--R 834
            AW K H+P  F AA +  +       +    DAR+  +Q+  P VN       + +    
Sbjct: 807  AWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVQVHRPDVNLSLSYAGLENGGLD 866

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            +   L AI+G+    A  I+E   A  PF S+ D   RV++       LE++  AGA + 
Sbjct: 867  VRIGLGAIRGLSDEVATRIVEERSAGGPFVSVADLSRRVEATT---AQLEAIATAGAFES 923

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
             G  R            +         N   +         +           +      
Sbjct: 924  LGRDRR--------AALWEAGAAAGLRNDQLD--------VTSPRGAPTLPGMSEVELTT 967

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             +    G     +P +  +P L  MG+   +  ++   G+ + +   V  +Q+  T  G 
Sbjct: 968  VDALSTGVSPRAYPTEYLRPRLDAMGVVPADRLLSVADGSRVLVGGAVTHRQRPATASG- 1026

Query: 1014 RIGWVTFSEPAKEYEANF 1031
             + +V   +         
Sbjct: 1027 -VTFVNLEDETGMVNVVC 1043


>gi|16262942|ref|NP_435735.1| DnaE3 DNA polymerase III alpha chain [Sinorhizobium meliloti 1021]
 gi|71151852|sp|Q92ZJ6|DNE22_RHIME RecName: Full=Error-prone DNA polymerase 2
 gi|14523588|gb|AAK65147.1| DnaE3 DNA polymerase III alpha chain [Sinorhizobium meliloti 1021]
          Length = 1087

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 268/1038 (25%), Positives = 454/1038 (43%), Gaps = 70/1038 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  LQV + +S L  A S   +          A+ + D N+L   +   + + A G++ 
Sbjct: 2    RYAELQVTTHFSFLRAASSAEELFATARLMGIEALGVVDRNSLAGIVRALEASRATGLRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC+LD+                    SI++  +    Y RL  L++        K + 
Sbjct: 62   VVGCRLDLQDGM----------------SILVYPTDRAAYSRLTRLLTLGKGRGG-KANC 104

Query: 130  RICLSWLQEIGTEGLI-MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
             I    +     EGLI +L    +  +              +L    ++FGDR YV+L  
Sbjct: 105  IIHFDDVALY-AEGLIGILVPDLADEV-----------CAVQLRKIAEVFGDRAYVSLCL 152

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRP 246
            R R  D+ +  ++  LA  H +  + TN+ LF      +  DV+  +    T+       
Sbjct: 153  RRRPNDQLQLHELTNLAVKHRVKTIVTNDVLFHEHGRRQLQDVVTCIRTGMTIDDVGFER 212

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                D YLK   EM  +F   PEAL  T+EI  RC F L+      P             
Sbjct: 213  ERHADRYLKPPEEMARLFPAYPEALARTMEIVERCRFSLEELVYQYPEEALILGM----T 268

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L++    G+  R  +G            + +  EL +I  MK++ YFL V   +++
Sbjct: 269  AQQSLQHYTWEGVRARYPEGLPTH------VEKTIRHELALIETMKYAPYFLTVFSIVRY 322

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I    GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +R
Sbjct: 323  ARSQGIL-CQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEHER 381

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+++   YGH++ A   T    +AK A+RDVG+AL +P   +  L   I +     
Sbjct: 382  REEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALDLPEDLIRTLSSGIWSW---- 437

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             S        R       D  +   L ++Q+L G  R+ S H  G V+    L  LVP+ 
Sbjct: 438  -SETVGERQVRELGLNPDDRRLTLTLRLAQQLMGAPRNLSQHPGGFVLTHDRLDDLVPIE 496

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDD 605
                +D  V +++   IE    +K D L L  LT + K+   +++     +DL+ IP +D
Sbjct: 497  PATMADRQVIEWDKDDIEALKFLKVDVLALGMLTCMAKAFALISEHKHEDIDLATIPQED 556

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
              TY ++    TLG FQ+ES      L  M+P    D++  V++ RPGPI   +V+    
Sbjct: 557  PATYAMIRKADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQVAIVRPGPIQGDMVHPYLR 616

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R+ GKEK+    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M      
Sbjct: 617  RREGKEKVEYPTPELEAVLHKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFT 676

Query: 724  -EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              + + K++ ++G  +NG +K  A   F  L  F  YGF +SHAA++A+I+Y + ++K +
Sbjct: 677  GGVSRFKDKLVNGMIRNGYTKEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYIKCY 736

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRIY 836
            +P  F AA +  +        +  +DAR+  +++ P  +N    D  +        + + 
Sbjct: 737  FPDVFCAALLNSQPMGFYAPAQIVRDAREHGVEVRPICINRSRWDCMLEPIDGSGGHAVR 796

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFG 895
              +  ++G+ T  A  I+ A AD+PF S++D   R     +    L  L  A A      
Sbjct: 797  LGMRLVRGLATADAARIVAARADEPFTSVDDMWRR---SGVPVASLVELAEADAFLPSLS 853

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R   L ++  ++     +     ++        +     +    +            +
Sbjct: 854  LERRDALWAIKALRDEPLPLFTAAADR------EARAIAEQEEPEVELRQMTDGQNVVED 907

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     HPL   +  L K  I    +++    G  +  A +V+ +Q+  + KG  +
Sbjct: 908  YSHTGLTLREHPLRFMRDDLAKRRIVTCAQAMTAHDGQWLMAAGLVLVRQRPGSAKG--V 965

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             ++T  +         +P
Sbjct: 966  MFITIEDETGIANIVVWP 983


>gi|254282771|ref|ZP_04957739.1| DNA polymerase III, alpha subunit subfamily, putative [gamma
            proteobacterium NOR51-B]
 gi|219678974|gb|EED35323.1| DNA polymerase III, alpha subunit subfamily, putative [gamma
            proteobacterium NOR51-B]
          Length = 1028

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 272/1035 (26%), Positives = 453/1035 (43%), Gaps = 73/1035 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  L   S++S L GA     ++++ A     A+AITD  +L  A++    A A GIQ 
Sbjct: 2    SYAELHCLSNFSFLRGASHPAELVERAAHCGYSALAITDECSLGGAVKAHVAAKACGIQL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G + +++                    +V L      Y  L  L+SR       K   
Sbjct: 62   IVGSEFNLN----------------EGIRLVALAPDRAAYAELSGLISRSRRRSA-KGEY 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               L  +       LI+            +     +            F  RL++ + R 
Sbjct: 105  STSLRDVIFHLKRCLII------------WLPTDDEEQSAYGKQLSSRFSGRLWIGVSRL 152

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             G D   R     Q A    LP+VA  +           HDVL A+ ++T V Q  + R+
Sbjct: 153  LGNDEIRRFRARYQFARELALPMVACGDVQMHCAARKPLHDVLTALRYNTSVQQLGQRRL 212

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              +     RS    +    P   + T+ IA RC F L       P  +    +       
Sbjct: 213  -VNSQQHLRSLDRLLPLYPPSLTDETLAIAARCHFSLDELRYEYPEEVIPAGE----TAN 267

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + LR +   G   R   G         D   R+  EL++I  + +  YFL V D +++A+
Sbjct: 268  SYLRRQVALGAHARWPDGV------PGDIEDRIHRELDLITELNYEYYFLTVYDIVRFAR 321

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            + +I    GRGS A SV  Y L IT++ P + SLLFERF++ +R   PD D+DF  +RR+
Sbjct: 322  ERDIL-CQGRGSAANSVVCYCLAITEVSPEQISLLFERFISRERDEPPDIDVDFEHERRE 380

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  KY   R A   T+ + ++++A+RD+G+AL +    VD L K +         
Sbjct: 381  EVIQYIYQKYSRRRAALAATYITYRSRSAVRDIGKALGLDPIFVDDLAKSLAWWNREREL 440

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                A          A       L + Q++ G  RH S H  G VI   PLS LVP+   
Sbjct: 441  SSRFAKH----GITAAGRQAHLFLNLVQEILGFPRHLSQHVGGFVISRGPLSHLVPIENA 496

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
                  V Q++ + IE  GL+K D L L  L+ ++KSLD+L Q       +  IP +D  
Sbjct: 497  AMDSRTVIQWDKEDIESLGLLKVDILALGMLSAIRKSLDWLHQYHPSIRSIQDIPKEDQA 556

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665
            TY +L    +LG+FQ+ES      L  ++P C  D++  +++ RPGPI   +V+    R+
Sbjct: 557  TYQMLQRGDSLGVFQIESRAQMSMLPRLKPACFYDLVIEIAIVRPGPIQGDMVHPYLRRR 616

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            NG E I      I  +L+ T GV I+QEQV+++A + +G++  EAD LRRA+    ++  
Sbjct: 617  NGLEPISYPSEDIRSVLESTLGVPIFQEQVIRLAMVAAGFTGGEADALRRAITNWGRDSK 676

Query: 726  -DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
                +++   G    G S   A  +F+ +  F  YGF +SH+A++A+++Y +AW++ H+P
Sbjct: 677  LLTFEQKLTEGMISRGYSPQFARQLFDQIKGFGGYGFPESHSASFALLAYVSAWLRRHHP 736

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK---VGDNR---IYYS 838
              F    +  +        +  Q AR+  + ++P ++N    D +    G+ +   +   
Sbjct: 737  AAFYLGLLNSQPMGFYTPSQLIQSARRQGVVVLPIAINHSQWDHQLLPPGNGQAPPLRLG 796

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L  +KG+    A  I+     + F  + D   R    +L++R +E+L  A AL     +R
Sbjct: 797  LRLVKGLSQAGAERIVAQREQRLFAHVGDLRRRA---RLDKRDMEALANADALQNLSGNR 853

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             Q    +  ++  +Q + +  +            T+ D I L      ++      +   
Sbjct: 854  HQSQWQIMALEPDSQLLHQTTST---------TETWDDDIHLP---APSTVENVLADYNA 901

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             G     HPL + +P       +   E  +      +R+A +V  +Q+  T  G  + ++
Sbjct: 902  TGLTLRSHPLALLRPQSPFDRCRRQSELASLGNHRFVRIAGIVTCRQRPGTASG--VIFL 959

Query: 1019 TFSEPAKEYEANFFP 1033
            T  +    +    +P
Sbjct: 960  TLEDETGNHNVVVWP 974


>gi|256962530|ref|ZP_05566701.1| DNA polymerase III alpha subunit [Enterococcus faecalis HIP11704]
 gi|307272063|ref|ZP_07553328.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0855]
 gi|256953026|gb|EEU69658.1| DNA polymerase III alpha subunit [Enterococcus faecalis HIP11704]
 gi|306511283|gb|EFM80288.1| putative DNA polymerase III DnaE [Enterococcus faecalis TX0855]
          Length = 1109

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 319/1031 (30%), Positives = 511/1031 (49%), Gaps = 54/1031 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2    SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEVCQEAGIQP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +L+    +                 ++L     +GYQ+L++L S     +      
Sbjct: 62   IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108

Query: 130  RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
                  L E  +    L  +T  + G + + FF    Q A          F    L+V  
Sbjct: 109  ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                  ++ R   +       +LP VA      L+ E+  A  VL ++  +  ++   + 
Sbjct: 161  -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +     R    ++   L  A    V+   + +   +V  P+  + +        + 
Sbjct: 220  -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D + +
Sbjct: 279  AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
               N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +R
Sbjct: 332  CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN     
Sbjct: 392  REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +      +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L  LVP+ 
Sbjct: 452  LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNLVPLQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP DD
Sbjct: 511  PGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAVKRVYNRTIRLNQIPLDD 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+  RK
Sbjct: 570  ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +
Sbjct: 630  KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP 
Sbjct: 690  DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844
             F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  +++KG
Sbjct: 750  AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R QL  
Sbjct: 810  IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L++  +         +    ++          K   E+ +      R E E++ LG Y 
Sbjct: 870  GLESNIQSILL-----SGGSMDLLETL------KPKEEEIADYPLEERLEQEEQYLGVYL 918

Query: 964  SGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            SGHP + +K   L K            +     +L   V + +  +T+KG ++ +V   +
Sbjct: 919  SGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNIRTIRTKKGEQMAFVDGDD 974

Query: 1023 PAKEYEANFFP 1033
                     FP
Sbjct: 975  TTGSISLTLFP 985


>gi|172061785|ref|YP_001809437.1| error-prone DNA polymerase [Burkholderia ambifaria MC40-6]
 gi|171994302|gb|ACB65221.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MC40-6]
          Length = 1071

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 273/1055 (25%), Positives = 445/1055 (42%), Gaps = 76/1055 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA     ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASHAEELVERAAELGYRGIAITDECSLAGAPRMHVAAKAQGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G   ++   +       G  P P    +VLL    EGY  L EL+S   +    K +
Sbjct: 69   LIVGSFFEVTPDE----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISWRRMAS-PKGT 123

Query: 129  VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L     E   L  +    +  +        + V + ++  F+  FG R  + L
Sbjct: 124  YRLTSRMLSAPPAEFAHLRGMPDCFAILVPTY--PVRADVLDAQVAWFRATFGARARLGL 181

Query: 187  -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             Q  R  D  +  ++        + +VA  +            DV+ A+     V     
Sbjct: 182  VQLQRPLDGAQREEIRAAGERRGVRIVALGDVTMHRRSCKPLQDVMTAIRVGMPV----- 236

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD---D 302
               +   Y    +    + +    A   + E       IL      L     +  D    
Sbjct: 237  ---SECGYALAPNAEQHLRARGRIAKLFSPEELDETCAILDACDFKLDSLQYEYPDEIVP 293

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                    L  +  AG   R  QG        +   +++ +EL++IAR+ +  +FL V D
Sbjct: 294  KGLTPTRHLEQETFAGAAARYPQG------IPEKVERQIRYELDLIARLSYEPFFLTVYD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+  NI    GRGS A SV  Y L IT+++P + ++LFERF++ +R   PD D+DF
Sbjct: 348  IVKYARSQNIL-CQGRGSAANSVVCYCLGITEVNPEQSTMLFERFISEERGEPPDIDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EVI+++ +KYGH+R A      + + +  LR+ G+AL +    VDR+ K     
Sbjct: 407  EHQRREEVIQHIYDKYGHDRAALAAAVSTYRPRGVLRETGKALGVDPMLVDRVAKAHRWF 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                  LQ  A          A P +    E++ +L    RH S H+ G VI    L++L
Sbjct: 467  DGSRDLLQQFAST----GLDPAMPIIRAWAELAGRLLNFPRHLSQHSGGFVISRGKLTRL 522

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------AQRGVKV 596
            VP+         V Q++   +E  GL+K D L L  L+ L ++ D         + G   
Sbjct: 523  VPVENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWRGPQEDGQPF 582

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             L  IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI 
Sbjct: 583  TLKHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLKPRNYYDLVVEVSIVRPGPIQ 642

Query: 657  NIVVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
               V+   K  +        ++      +  +L+ T GV I+QEQVMQIA + +G++  E
Sbjct: 643  GGAVHPYLKRRRIMAGEEEGEVTYPSEALKEVLERTLGVPIFQEQVMQIAIVAAGFTPGE 702

Query: 710  ADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD LRRAM     K  ++K   + I G  +   ++  A  IFE +  F +YGF +SHAA+
Sbjct: 703  ADELRRAMAAWKRKGNLEKYHGKIIDGMLERNYTREFAEQIFEQIKGFGEYGFPESHAAS 762

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            +A ++Y ++W+K H P  FLAA +  +        +  QDA++  +Q++P  V     + 
Sbjct: 763  FAKLAYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHGVQVLPIDVTLSNWEA 822

Query: 829  KV----------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
             +          G   +   L+ ++G+G   AR I  A A  PFD+++    R    +L 
Sbjct: 823  SLAALPDQPPPHGQPAVRLGLSLVRGLGEAAARRIEAARAAGPFDNVDVLARRA---QLE 879

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            RR LE+L  A AL      R   L             +        ++ A       D+ 
Sbjct: 880  RRDLEALAAANALATLAGHRRDALW------------QAVAAAPERDLLAAAP---IDEP 924

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
                    + +     +    G   + HP+ + +P LR   +    E      G   R  
Sbjct: 925  EKPALGAPSEADDILADYDTTGLTLNRHPVALVRPALRAQRLSSAAELRDRSDGRLARAC 984

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +V ++Q   T KG  + ++T  +          P
Sbjct: 985  GIVTARQMPGTAKG--VMFMTLEDETGCVNVIVRP 1017


>gi|17549021|ref|NP_522361.1| error-prone DNA polymerase [Ralstonia solanacearum GMI1000]
 gi|71151835|sp|Q8XRN1|DNAE2_RALSO RecName: Full=Error-prone DNA polymerase
 gi|17431271|emb|CAD17951.1| probable dna polymerase III (alpha chain) protein [Ralstonia
            solanacearum GMI1000]
          Length = 1075

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 259/1072 (24%), Positives = 430/1072 (40%), Gaps = 109/1072 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA   + ++ +  A    A+A+TD  ++   +     A  AG++
Sbjct: 12   PDYAELHCISNFTFLTGASHPHELVARAQAFGYRALALTDECSVAGTVRAHMAAKEAGLK 71

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG +  +                     +VLL    +GY  L E +++  L    K  
Sbjct: 72   LIIGSRFTVRDAQGEPWL-----------RLVLLAQDIDGYGNLCECITQARLA-APKGD 119

Query: 129  VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL--YV 184
             R+    L     E   L  +    +  +         +    +    +++FGDRL   +
Sbjct: 120  YRLLADDLAAPAGELAHLRGMPHCLAILLPDY--DPDPRHLLAQAQWCRQVFGDRLSMAL 177

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             L      DR+R   V  ++   ++P+VAT +    S +    HDVL A+  S  +++  
Sbjct: 178  ELPLRHADDRHR-GTVAAVSEQTDVPMVATGDVAMHSRQRKPLHDVLTAIRLSRPIAECG 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLP---EALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                            ++ F       + L  +VE+A  C F L   A   P  +  E  
Sbjct: 237  LALAPSAEQAMRTRMQLAFFYQGERGAQVLRRSVELASLCDFSLDEIAYEYPHEVVPEG- 295

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               +     L  + +AG   R  +            R +LD EL +IA +++  +FL V 
Sbjct: 296  ---QTPAGYLLAEVMAGAARRYGKD------IPSKVRAQLDEELALIAELRYEPFFLTVY 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D +++A+  +I    GRGS A S   Y L IT+++P   + LF RFL+  R   PD D+D
Sbjct: 347  DVVRFARSQSIL-CQGRGSAANSAVCYCLGITEVNPESGNTLFARFLSRARNEPPDIDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F   RR+EVI+Y+  KYG  R A      + + ++ALRDVGRAL +    ++++ K    
Sbjct: 406  FEHQRREEVIQYIYKKYGVTRTALAAALITYRTRSALRDVGRALGIDLGVIEQVAKAQAW 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                       A  +  +      P V R   + ++L G  RH S H  G VI    LS+
Sbjct: 466  WDGR----HEFAQRAGQQGLDPESPLVQRWAGLIEQLRGFPRHLSQHVGGFVIAQGKLSR 521

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-------LAQRGV 594
            LVP+      +  V Q++   +E   L+K D L L  LT ++++LD         A  G 
Sbjct: 522  LVPIENAAMPERRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDMLDALPGRRAHYGA 581

Query: 595  KVDLSLIPFDDHE--TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               L++    D +  TY ++    T+G+FQ+ES   +  L  ++P    D++  V++ RP
Sbjct: 582  PDKLAMQHLPDEDTATYEMICRAETIGVFQIESRAQQSMLPRLRPRTYYDLVIQVAIVRP 641

Query: 653  GPIDNIVVYNNRKN-------GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GPI   +V+   +          + +    P +  +L+ T GV I+QEQVM+IA    G+
Sbjct: 642  GPIQGGMVHPYLQRREAVRNGNPDCVTYPGPEVKAVLERTLGVPIFQEQVMEIAMKAGGF 701

Query: 706  SLSEADVLRRAM--GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            +  EAD LRR M   K+       Q                    +   +  FA+YGF +
Sbjct: 702  TADEADRLRRDMAAWKRKGNLTQHQARLMKEMVEVRHYDPAFVEALCRQMEGFAEYGFPE 761

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAA +A ++Y ++++K H P  F AA +  +        +  Q+AR+  ++++P  V  
Sbjct: 762  SHAAGFARLAYVSSFLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRSRVRVLPADVTA 821

Query: 824  PCVDFKV--------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
               D  +        G   I   L  I+G+       I+ A A  PF S+ED   R    
Sbjct: 822  SAWDSTLHARPDGAGGQPDIRLGLNRIRGMRPAAGERIVVARAQAPFSSVEDLAHRA--- 878

Query: 876  KLNRRVLESLVFAGALDCFG--------------YSRMQLLQSLDNIQKYAQWVEKNRTN 921
                          ALD                   R Q L     +Q+  Q        
Sbjct: 879  --------------ALDRHDLSVLAAANALLSLAGHRRQALWQTLALQEPGQDHA----- 919

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
                +    +   +  +        +       +   LG     HPL + +P L +M   
Sbjct: 920  ----LLRQARPVEAPLV----LPAPSLGEEVVADYGSLGLSLQSHPLSLLRPRLERMRFV 971

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                      G   R   +V  +Q+  T KG+   +V+  +         +P
Sbjct: 972  TAAALAGYRNGQLARACGIVTVRQRPGTAKGT--IFVSIEDETGAVNVVLWP 1021


>gi|307311805|ref|ZP_07591444.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C]
 gi|306899546|gb|EFN30176.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C]
          Length = 1087

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 269/1038 (25%), Positives = 454/1038 (43%), Gaps = 70/1038 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  LQV + +S L  A S   +          A+ + D N+L   +   + + A G++ 
Sbjct: 2    RYAELQVTTHFSFLRAASSAEELFATARLMGIEALGVVDRNSLAGIVRALEASRATGLRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC+LD+                    SI++  +    Y RL  L++        K + 
Sbjct: 62   VVGCRLDLQDGM----------------SILVYPTDRAAYSRLTRLLTLGKGRGG-KANC 104

Query: 130  RICLSWLQEIGTEGLI-MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
             I    +     EGLI +L    +  +              +L    ++FGDR YV+L  
Sbjct: 105  IIHFDDVALY-AEGLIGILVPDLADEV-----------CAVQLRKIAEVFGDRAYVSLCL 152

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRP 246
            R R  D+ +  ++  LA  H +  + TN+ LF      +  DV+  +    T+       
Sbjct: 153  RRRPNDQLQLHELTNLAVKHRVKTIVTNDVLFHEHGRRQLQDVVTCIRTGMTIDDVGFER 212

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                D YLK   EM  +F   PEAL  T+EI  RC F L+      P             
Sbjct: 213  ERHADRYLKPPEEMARLFPAYPEALARTMEIVERCRFSLEELVYQYPEEALILGM----T 268

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L++    G+  R  +G            + +  EL +I  MK++ YFL V   +++
Sbjct: 269  AQQSLQHYTWEGVRARYPEGLPTH------VEKTIRHELALIETMKYAPYFLTVFSIVRY 322

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I    GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +R
Sbjct: 323  ARSQGIL-CQGRGSAANSAVCYVLGITSIDPETNDLLFERFVSQERDEPPDIDVDFEHER 381

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+++   YGH++ A   T    +AK A+RDVG+AL +P   +  L   I +     
Sbjct: 382  REEVIQWIYKTYGHDKAALCSTVTRYRAKGAIRDVGKALDLPEDLIRTLSSGIWSW---- 437

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             S        R       D  +   L ++Q+L G  RH S H  G V+    L  LVP+ 
Sbjct: 438  -SETVGERQVRELGLNPDDRRLTLTLRLAQQLMGAPRHLSQHPGGFVLTHDRLDDLVPIE 496

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDD 605
                +D  V +++   IE    +K D L L  LT + K+   +++     +DL+ IP +D
Sbjct: 497  PATMADRQVIEWDKDDIEALKFMKVDVLALGMLTCMAKAFALISEHKHEDIDLATIPQED 556

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
              TY ++    TLG FQ+ES      L  M+P    D++  V++ RPGPI   +V+    
Sbjct: 557  RATYAMIRKADTLGTFQIESRAQMSMLPRMKPRTFYDLVIQVAIVRPGPIQGDMVHPYLR 616

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R+ GKEK+    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M      
Sbjct: 617  RREGKEKVEYPTPELEAVLHKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFT 676

Query: 724  -EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              + + K++ ++G  +NG +K  A   F  L  F  YGF +SHAA++A+I+Y + ++K +
Sbjct: 677  GGVSRFKDKLVNGMIRNGYTKEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYIKCY 736

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRIY 836
            +P  F AA +  +        +  +DAR+  +++ P  +N    D  +        + + 
Sbjct: 737  FPDVFCAALLNSQPMGFYAPAQIVRDAREHGVEVRPICINRSRWDCMLEPIDGSGGHAVR 796

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFG 895
              +  ++G+ T  A  I+ A AD+PF S++D   R     +    L  L  A A      
Sbjct: 797  LGMRLVRGLATADAARIVAARADEPFTSVDDMWRR---SGVPVASLVELAEADAFLPSLS 853

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R   L ++  ++     +     ++        +     +    +            +
Sbjct: 854  LERRDALWAIKALRDEPLPLFTAAADR------EARAIAEQEEPEVELRQMTDGQNVVED 907

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     HPL   +  L K  I    +++    G  +  A +V+ +Q+  + KG  +
Sbjct: 908  YSHTGLTLREHPLRFMRDDLAKRRIVTCAQAMTAHDGQWLMAAGLVLVRQRPGSAKG--V 965

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             ++T  +         +P
Sbjct: 966  MFITIEDETGIANIVVWP 983


>gi|206559167|ref|YP_002229927.1| error-prone DNA polymerase [Burkholderia cenocepacia J2315]
 gi|198035204|emb|CAR51078.1| error-prone DNA polymerase [Burkholderia cenocepacia J2315]
          Length = 1070

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 267/1055 (25%), Positives = 444/1055 (42%), Gaps = 76/1055 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA   + ++++        IAITD  +L  A      A A G+ 
Sbjct: 8    PDYAELFCRSNFSFLHGASHADELVERAVKLGYRGIAITDECSLAGAPRMHVAAKANGLP 67

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             +IG   D+   D       G  P P    +VLL    EGY  L EL+S   +    K +
Sbjct: 68   LVIGSYFDVTPDD----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISWRRMAS-PKGT 122

Query: 129  VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             ++    L     E   L  +    +  +        + V + ++  F+  FG+R  + L
Sbjct: 123  YQLTSRMLSAPPAEFAHLRGMPDCFAILVPTY--PVRADVLDAQVAWFRATFGERARLGL 180

Query: 187  -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             Q  R  D  +  ++ +      + LVA  +            DV+ A+     V     
Sbjct: 181  VQLQRALDGAQRDEIREAGKRRGVRLVALGDVTMHVRSCKPLQDVMTAIRVGMPV----- 235

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD---D 302
               +   Y    +    + S    A   +         +       L     +  D    
Sbjct: 236  ---SECGYALAPNAEQHLRSRGRIAKLFSSAEIAETCAMFDACDFELDSLRYEYPDEIVP 292

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                    L  +  AG  VR  QG        +   +++  EL++IAR+ +  +FL V D
Sbjct: 293  AGLTPTRYLEQETFAGAAVRYPQG------IPEKVDKQIRHELDLIARLSYEPFFLTVYD 346

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+  NI    GRGS A SV  Y L IT+++P + ++LFERF++ +R   PD D+DF
Sbjct: 347  IVKYARSQNIL-CQGRGSAANSVVCYCLGITEVNPEQSTMLFERFISEERGEPPDIDVDF 405

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EVI+++  KYG +R A      + + +  LR+ G+AL +    VDR+ K     
Sbjct: 406  EHQRREEVIQHIYAKYGKDRAALAAAVSTYRPRGVLRETGKALGVDPMLVDRVAKGHRWF 465

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                  L+  A            P +    E++ +L    RH S H+ G  I    L++L
Sbjct: 466  DGSRDLLRQFAST----GLDPETPLIRTWAELAGRLLNFPRHLSQHSGGFAISRGKLTRL 521

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------AQRGVKV 596
            VP+         V Q++   +E  GL+K D L L  L+ L ++ D        A+ G   
Sbjct: 522  VPVENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWRGPAKDGKPF 581

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             L  IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI 
Sbjct: 582  TLKHIPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLKPRNYYDLVVQVSIVRPGPIQ 641

Query: 657  NIVVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
               V+   +  +        ++      +  +L  T GV I+QEQVMQIA + +G++  E
Sbjct: 642  GGAVHPYLQRRRIVAGEEEGEVTYPSDALKEVLVRTLGVPIFQEQVMQIAIVAAGFTPGE 701

Query: 710  ADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD LRRAM     K  ++K +++ ISG  +   ++  A  IFE +  F +YGF +SHAA+
Sbjct: 702  ADDLRRAMAAWKRKGNLEKYQDKIISGMLERNYTREFAEQIFEQIKGFGEYGFPESHAAS 761

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            +A ++Y ++W+K H P  FLAA +  +        +  QDA++  ++++P  V     + 
Sbjct: 762  FAKLAYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHRVKVLPIDVTQSTWEA 821

Query: 829  KVG----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
             +              +   L+ ++G+    AR I  A A  PFD+++    R    +L 
Sbjct: 822  ALEALPDQPPPHGQPAVRLGLSLVRGLSEAAARRIEAARAAGPFDNVDTLARRA---QLE 878

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            RR LE+L  A AL      R   L             +        ++ A       D++
Sbjct: 879  RRDLEALAAANALATLAGHRRDALW------------QAVAAAPERDLLAAAP---IDEV 923

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
                    + +     +    G   + HP+ + +P LR   +    E      G   R  
Sbjct: 924  EQPALGAPSEADDILADYHTTGLTLNRHPVALLRPALRAQRLSSAAELRDRPDGRLARAC 983

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +V+++Q   T KG  + ++T  +          P
Sbjct: 984  GLVIARQMPGTAKG--VMFMTLEDETGCVNVIVRP 1016


>gi|190574832|ref|YP_001972677.1| error-prone DNA polymerase [Stenotrophomonas maltophilia K279a]
 gi|190012754|emb|CAQ46383.1| putative DNA polymerase III alpha subunit [Stenotrophomonas
            maltophilia K279a]
          Length = 1036

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 283/1043 (27%), Positives = 452/1043 (43%), Gaps = 86/1043 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S   GA     +  + A     A+AITD  +L   +   Q A A G+ 
Sbjct: 6    PGYAELHCLSAFSFQRGASIAEELFARAAGQGYRALAITDECSLAGIVRAWQAAKAHGVA 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  ++                  P + LL +    Y  L +L++        K  
Sbjct: 66   LIVGAEFQVEDG----------------PKLALLCTDQAAYAGLCQLITTCRRRAA-KGE 108

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R     L  +               +   +       A   L   +  F DRL++ ++ 
Sbjct: 109  YRCLREDLLGLPD------------GLLCLWLDRQP--AATDLELLRAGFNDRLWLAVEL 154

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H  +D   R  Q+      H L LVA+ +            D L A+ H   V++    R
Sbjct: 155  HHEHDDARRLQQLQAFGERHRLTLVASGDVHMHVRRRRALQDTLTAIRHRCSVAEAG-WR 213

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            + P+     R           E L  T+ IA RC F L+      PR +  E  D     
Sbjct: 214  LFPNGERHLRPRTALAQLYPAELLAETLRIAERCHFTLEQLQYTYPRELVPEGHD----P 269

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++ LR      +  R  +G           R++++ EL +I    ++ YFL V D +++A
Sbjct: 270  DSWLRELVEEKIPWRWPEGIKDAQ------RKQIEHELALIREKNYASYFLTVHDIVRFA 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  +I    GRGS A S   + L +T+IDP R +LLFERF++ +R   PD DIDF  +RR
Sbjct: 324  RSQDIL-CQGRGSAANSTVCFVLGVTEIDPARSNLLFERFISAERNEPPDIDIDFEHERR 382

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV  +YG ER A      S + ++A+RDV RAL +P  QV+ L   + +   +  
Sbjct: 383  EEVLQYVFKRYGRERAALTAVAISYRGRSAIRDVARALGLPMDQVNELGAAMDHWGGN-- 440

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                + +  R R      P + RLL ++ +L    RH S H  G VI + PLS LVP+  
Sbjct: 441  --IPLPETLRERGFDPDTPLMRRLLALTAELIDFPRHLSQHPGGFVISEHPLSTLVPVEN 498

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
               +D  V Q++   ++  GL+K D L L  LT ++K L  L Q G  +  +  IP +D 
Sbjct: 499  AAMADRTVIQWDKDDLDATGLMKVDCLALGMLTAIRKCLAMLKQHGLHEGRMDAIPDEDG 558

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             TY ++    T+G+FQ+ES      L  MQP    D++  V++ RPGPI   +V+   + 
Sbjct: 559  PTYDMICAADTIGVFQIESRAQMAMLPRMQPREFYDLVIEVAIVRPGPIQGDMVHPYLER 618

Query: 667  GK------------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
             +                   P ++ +   T GV ++QEQVMQ+A   +GY   EAD LR
Sbjct: 619  RRILREQGPDALNDPDNPLYPPQLERVFARTLGVPLFQEQVMQLAVEAAGYEPGEADALR 678

Query: 715  RAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+M    +    +  +E+ ++G  KNG S     ++FE +  F DYGF +SHAA++A+++
Sbjct: 679  RSMAAWKRRGGLEPHREKLLTGMLKNGFSLEYGEHLFEQIKGFGDYGFPESHAASFALLT 738

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV----DFK 829
            Y + W+K H+P  F A+ +  +        +  QDAR+  I+++P  V         DF 
Sbjct: 739  YASCWLKCHHPAAFTASLINSQPLGFYSPDQLLQDARRHGIRVLPVDVRHSDWDCTLDFS 798

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             G   I   L  + G      + IM   A +PFD + D C R     L+RR    L  AG
Sbjct: 799  RGAAAIRLGLRLVDGCNEPDVQAIMRERARRPFDDVGDLCQRT---ALDRRQQGLLADAG 855

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            AL      R +    +  +                 +F   + T   ++ L   S     
Sbjct: 856  ALRGLSGHRHRARWDISGV------------ENRLPLFDQARATAEARVPLPLPSAW--- 900

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
               + + R  G     HP+   +  LR  G     + V    G  +R+A +V  +Q+ +T
Sbjct: 901  EDMQADYRSTGTTLGRHPISFLRAQLRSRGCLDAAQLVDHGHGRRVRIAGLVRMRQRPQT 960

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
              G  + ++T  +      A  +
Sbjct: 961  ASG--VTFLTLEDETGMVNAVVW 981


>gi|296129882|ref|YP_003637132.1| DNA polymerase III, alpha subunit [Cellulomonas flavigena DSM 20109]
 gi|296021697|gb|ADG74933.1| DNA polymerase III, alpha subunit [Cellulomonas flavigena DSM 20109]
          Length = 1173

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 292/1120 (26%), Positives = 479/1120 (42%), Gaps = 124/1120 (11%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
             P +  L  HS++S L+GA     +  + A   Q A+A+TD + L+  + F+Q A A G+
Sbjct: 29   PPRYAELHAHSAFSFLDGASQPEELAAEAARLGQSALALTDHDGLYGVVRFAQAARAVGL 88

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKT-------------PFPTVPSIVLLVSTAEGYQRLIE 114
              + G +L +   D  +   + +              P P    +++L   A+GY+ L  
Sbjct: 89   PTVFGAELHLPAPDPRRHPREKRPTPGPPVLDAPTGVPDPRASHLLVLARGADGYRALSR 148

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS---------- 164
             ++  +L    K +    L  L E      ++LTG   G + RA                
Sbjct: 149  AIAEGHLRTGRKGAAEYHLEELAEAAAGQWLVLTGCRKGAVRRALAGGDPSGVLGVAPGG 208

Query: 165  -QVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLS 221
             + A   L     LFG D + V    H   YD  R   +  LA    LPLVAT N  + +
Sbjct: 209  IEAARTELDRLVALFGRDNVAVETTMHGDAYDTDRADALATLAADARLPLVATGNVHYAT 268

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARR 280
            E D +    L AV   + +   D         +L++ +EM+ +    P A+    ++A  
Sbjct: 269  ERDADLALALAAVRARSSLDDLDGWLPGAPVAHLRSAAEMLHLHRRHPSAVTTAADLAAE 328

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
            C+F L + AP LP +   +       E   LR     G       G          Y  +
Sbjct: 329  CAFDLSLVAPSLPPYPVPDG----HTEATWLRELVRRGAAELY--GPPDAERVPGAY-AQ 381

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            L+ EL VI  + F GYFL+V D + + ++  I    GRGS A S   Y L +T +DP++ 
Sbjct: 382  LEHELRVIEDLGFPGYFLVVYDLVDFCRRQGIM-AQGRGSAANSAVCYVLRVTAVDPVKH 440

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFL P+R   PD D+D    RR+EVI++V   +G    AQ+    S + ++A+RD
Sbjct: 441  GLLFERFLAPERDGPPDIDVDIESARREEVIQHVYATHGRSHAAQVANVISYRPRSAVRD 500

Query: 461  VGRALQMPYSQVDRLCKLIPND-----PAHPVSLQAIADDSRF----------------- 498
              RAL     Q D     I        P  P +   +                       
Sbjct: 501  AARALGYDAGQQDAWSTSIERWGSLRGPEKPSAWWHLTRSGPVGPGSEVAGMPTADNHDV 560

Query: 499  ------REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
                    A  A+   + +++++++   L RH   H+ G+V+ DRP+ ++ P+       
Sbjct: 561  VPTRLPPSAAEAEEIPEHVIDLAERFLRLPRHLGIHSGGMVMCDRPVIEVCPVEWARMEG 620

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHL 611
              V Q++ +    AGL+KFD LGL  LT L+ +   + +      DL  +P +D   Y L
Sbjct: 621  RTVLQWDKEDCADAGLVKFDLLGLGMLTALRLAFTEVEKHEGVTLDLHGLPHEDPAVYEL 680

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKNGKE 669
            L+   T+G+FQ+ES      L  ++P    DI+  V+L RPGPI   ++  + NR  G+E
Sbjct: 681  LSAADTVGVFQVESRAQMGTLPRLRPSTFYDIVVEVALIRPGPIQGGSVHPFINRAKGRE 740

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQ 728
             +  +HPL++  L +T GV ++QEQ+MQ+A  ++ ++ +EAD LRRAM  K+  E M+  
Sbjct: 741  PVTYLHPLLEKSLGKTLGVPLFQEQLMQMAIDVADFTPAEADQLRRAMGSKRSMERMEAI 800

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            + R + G + NGI   +   IF+ L  FAD+GF +SHA ++A + Y ++W+K H+P  F 
Sbjct: 801  RSRLMEGMAANGIGSQVREQIFDKLKAFADFGFPESHAYSFAFLVYASSWLKVHHPAAFY 860

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV--------------------------- 821
            A  +  +       +    DAR+  I+++ P V                           
Sbjct: 861  AGLLAAQPMGFYSPQSLAADARRHGIEVLRPDVLASEVLAVVERLGPPPHGGEPRLVPQP 920

Query: 822  ----NTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR 871
                 T  V  + G+       +   L  ++ +G   AR +++A  AD PF  L+D   R
Sbjct: 921  SGTGPTRPVGVRTGEGSVRTLAVRQGLTQVRTIGEDVARALVDARTADGPFTDLQDLVRR 980

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            V    L    +E+L  AGALD  G  R   L +   +               + +     
Sbjct: 981  VH---LTTAQIEALATAGALDSLGVDRRSGLWAAGAL----------AQEGPDTLPGVAV 1027

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
            G     +        +       +    G     +P    +  L   G+   E++  T  
Sbjct: 1028 G-----VKAPALPGLSGVEVATADVWATGVSVDSYPTQFVRDGLDAAGVLTVEQAFRTEE 1082

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            G  + +A +V  +Q+  T +G  + +++  +         
Sbjct: 1083 GRRVAVAGVVTHRQRPGTAQG--VTFLSLEDETGLLNIVC 1120


>gi|160915308|ref|ZP_02077521.1| hypothetical protein EUBDOL_01317 [Eubacterium dolichum DSM 3991]
 gi|158433107|gb|EDP11396.1| hypothetical protein EUBDOL_01317 [Eubacterium dolichum DSM 3991]
          Length = 1027

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 333/1025 (32%), Positives = 559/1025 (54%), Gaps = 44/1025 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL V S+Y+LL+  L++  I+         ++A+TD N +  A+ F        I+PI 
Sbjct: 3    VHLHVRSAYTLLQSTLTIPKIIACTKQHGYQSVALTDKNVMHGAMAFYHACIKENIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +++    ++                 +LL    +GY  L++L + +   +  K   ++
Sbjct: 63   GMEVEAAYDNDSLG-------------FILLAKNDQGYVDLMKLSTLLNTGEHAK---QV 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190
                L    T+  ++LT G    ++         +  K L    + F D  YV++ R+  
Sbjct: 107  SFEELCLY-TKDCVVLTNGDQNIMETYLVKEEIGLLSKLLQLCTQSFTD-FYVSIARNDS 164

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G  + +  ++  L    ++  VA +   F  E + E++  L A+     V  +       
Sbjct: 165  GLLKSKNPRLKSLCKEMKIRTVALSRIYFQDEAEEESYKTLCAIHQQVSVDDRMLNFSPK 224

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +Y            +   A   + EIA +C+  +Q    ILP+F  K         E  
Sbjct: 225  RYYRSQAEMAQLYDEEDLLA---SEEIAAKCNVKMQFPQAILPKFKNKYGV----SSEEF 277

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LRN    GL  R+           + Y+QRL++EL+VI  M ++ YFLIV DFI++AK  
Sbjct: 278  LRNLCHKGLAKRMH-----FQAIPKVYQQRLEYELDVIINMHYADYFLIVWDFIRFAKSQ 332

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            NI +GPGRGS AGS+ +Y L IT +DPL+++LLFERFLNP+R+SMPD D DF  +RRDEV
Sbjct: 333  NIYIGPGRGSAAGSLVSYCLGITHVDPLQYNLLFERFLNPERVSMPDIDTDFPDNRRDEV 392

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I YV+  YG  R + IITF +L AK  LRDVGRA+ +   ++D LCK++P+ P   +   
Sbjct: 393  IEYVKGLYGSHRASHIITFNTLAAKQVLRDVGRAMNISLREIDSLCKMVPSMPKVTLDYT 452

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
               + +RF++   +     +L  IS++LEGL RHAS HAAGIV+ +  +S + P+  DV 
Sbjct: 453  -YENSARFKQKINSSQLYRKLFAISKQLEGLPRHASLHAAGIVLSNDAISSVCPLI-DVD 510

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
            + +  TQF M ++E+ GLIK DFLGL+ LT++ + ++ + +    K+D+  IP +D +T+
Sbjct: 511  AGISATQFTMDYMEELGLIKMDFLGLRNLTIIDEVVNLINRDHENKLDIMHIPLNDKKTF 570

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L+    T+G+FQLES GM+  L  M+P C EDI+A V+L+RPGP++NI  Y  R+   +
Sbjct: 571  ALIQAVDTVGVFQLESEGMKNLLRKMKPTCFEDIVATVALFRPGPMENIPEYLERRANPQ 630

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  IHPL+ P+L+ T G++IYQEQ+MQ+AQ+++G+SL +AD LR+A+ KK  EE+ + K
Sbjct: 631  KVDYIHPLLKPILENTYGIMIYQEQIMQVAQVMAGFSLGKADNLRKAISKKKGEELARLK 690

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI GA + G  + +A++++EL+ KFA+YGFN+SH+ AY +I+YQ A++K + P+ F  
Sbjct: 691  NDFIQGAKQKGFEEQLAIHVYELIMKFANYGFNRSHSVAYGMIAYQMAYLKANAPLYFFV 750

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            + +   + +  K  ++  +A++  I I+ PSVN     +++    + + L  IKG+G   
Sbjct: 751  SLLNSMIGSESKTSEYIFEAKKRGISILLPSVNFSGNGYRIEKRSLRFPLNGIKGIGNAV 810

Query: 850  ARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
               I++       F    DF +R+ +  + ++ +E L++AGALD F  +R  ++ +L++ 
Sbjct: 811  CSQILKERNSHGKFRDYFDFVARMSAIHIGKKTMEILIYAGALDEFNINRSSMIATLEDA 870

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +Y + V+    ++   +FA E  +    I++++          E E+  LGFY S HP+
Sbjct: 871  LRYGELVKIEDADQI--LFAFELVSKPAIISVKEHRSM----LVEKEKECLGFYLSSHPI 924

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            ++ +  +    +       A      +R   M+   +Q +T+ G+ + +   ++   + +
Sbjct: 925  ELLRKRMNAQ-LAPLIALKAQR--GYVRFLCMIERVKQHRTKNGALMAFAVSADETSKID 981

Query: 1029 ANFFP 1033
                P
Sbjct: 982  LVCMP 986


>gi|194366156|ref|YP_002028766.1| error-prone DNA polymerase [Stenotrophomonas maltophilia R551-3]
 gi|194348960|gb|ACF52083.1| DNA polymerase III, alpha subunit [Stenotrophomonas maltophilia
            R551-3]
          Length = 1036

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 282/1043 (27%), Positives = 449/1043 (43%), Gaps = 86/1043 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S   GA     +  + A     A+AITD  +L   +   Q A   G+ 
Sbjct: 6    PGYAELHCLSAFSFQRGASIAEELFARAAGQGYRALAITDECSLAGIVRAWQAAKTHGVA 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  ++                  P + LL +    Y  L +L++        K  
Sbjct: 66   LIVGAEFQVEDG----------------PKLALLCTDQAAYAGLCQLITTCRRRAA-KGE 108

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R     L  +               +   +        +  L   +  F DRL++ ++ 
Sbjct: 109  YRCLREDLLGLPD------------GLLCLWLDRQPAAID--LELLRAGFDDRLWLAVEL 154

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H  +D   R  Q+      H LPLVA+ +            D L A+ H   V++    R
Sbjct: 155  HHEHDDARRLQQLQAFGERHRLPLVASGDVHMHVRRRRALQDTLTAIRHRCSVAEAG-WR 213

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            + P+     R           E L  T+ IA RC F L+      PR +  E  D     
Sbjct: 214  LFPNGERHLRPRTALAQLYPSELLAETLRIAERCHFTLEQLQYTYPRELVPEGHD----P 269

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++ LR     G+  R   G           R++++ EL +I    ++ YFL V D +++A
Sbjct: 270  DSWLRVLVERGIPWRWKGGIEPAQ------RKQIEHELALIREKNYASYFLTVQDIVRFA 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  +I    GRGS A S   + L +T+IDP R +LLFERF++ +R   PD DIDF  +RR
Sbjct: 324  RSQDIL-CQGRGSAANSAVCFVLGVTEIDPARSNLLFERFISAERDEPPDIDIDFEHERR 382

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV  +YG ER A      S + ++A+RDV RAL +P  QV+ L   + +   H  
Sbjct: 383  EEVLQYVFKRYGRERAALTAVAISYRGRSAIRDVARALGLPMDQVNELGAAMDHWGGH-- 440

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                + +  R R      P + RLL ++ +L    RH S H  G VI + PLS LVP+  
Sbjct: 441  --VPLPETLRERGFDPETPLMRRLLALTAELIDFPRHLSQHPGGFVISEHPLSTLVPVEN 498

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
               +D  V Q++   ++  GL+K D L L  LT ++K L  L Q G     +  I  DD 
Sbjct: 499  AAMADRTVIQWDKDDLDATGLMKVDCLALGMLTAIRKCLAMLQQHGLHSGRMDAIEDDDK 558

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             TY ++    T+G+FQ+ES      L  +QP    D++  V++ RPGPI   +V+   + 
Sbjct: 559  PTYDMICAADTIGVFQIESRAQMAMLPRLQPREFYDLVIEVAIVRPGPIQGDMVHPYLER 618

Query: 667  GK------------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
             +                   P +  +   T GV ++QEQVMQ+A   +GY+  EAD LR
Sbjct: 619  RRLLREQGPDALNDPDNPLYPPQLKRVFARTLGVPLFQEQVMQLAVDAAGYTPGEADALR 678

Query: 715  RAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+M    +    +  +E+ ++G  KN  S+    ++FE +  F DYGF +SHAA++A+++
Sbjct: 679  RSMAAWKRRGGLEPHREKLLAGMLKNNFSREYGEHLFEQIKGFGDYGFPESHAASFALLT 738

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--- 830
            Y + W+K HYP  F A+ +  +        +  QDAR+  I+++P  V     D  +   
Sbjct: 739  YASCWLKCHYPAAFTASLINSQPLGFYSPDQLLQDARRHGIRVLPVDVRHSDWDCTLDFS 798

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             G   I   L  + G      R IM   A +PFD + D C R     L+RR    L  AG
Sbjct: 799  KGPAAIRLGLRLVDGCNEPAVRAIMRERARRPFDDVGDLCQRT---ALDRRQQGLLADAG 855

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            AL      R +    +  +                 +F   + T   ++ L   S     
Sbjct: 856  ALRGLSGHRHRARWDISGV------------ENRLPLFDQARATAEARVPLPLPSAW--- 900

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
               + + R  G     HP+   +  LR  G     +      G  +R+A +V  +Q+ +T
Sbjct: 901  EDMQADYRSTGTTLGRHPISFLRAQLRSRGCLDAAQLAGHGHGRRVRIAGLVRMRQRPQT 960

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
              G  + ++T  +      A  +
Sbjct: 961  ASG--VTFLTLEDETGMVNAVVW 981


>gi|90417277|ref|ZP_01225203.1| DNA polymerase III, alpha subunit, putative [marine gamma
            proteobacterium HTCC2207]
 gi|90330862|gb|EAS46125.1| DNA polymerase III, alpha subunit, putative [marine gamma
            proteobacterium HTCC2207]
          Length = 1048

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 261/1061 (24%), Positives = 446/1061 (42%), Gaps = 99/1061 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  L   S+++ L GA   + ++ + +     AIAITD  +L   ++    A     + 
Sbjct: 2    SYAELHCISNFTFLRGASHPHELVKRASDLNYSAIAITDECSLAGVVKAHVAAIDHDFKL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG +  +D                    ++ L    + Y  L  L++        K S 
Sbjct: 62   IIGSEFRLD-----------------GHKLIALAPNRQAYSELSALITLARRRGD-KGSY 103

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            ++  + L+      L++                   V  +R       F DRL+V +   
Sbjct: 104  QLDWNDLEGNLRNALLI-----------WLPSQQLDVDHQRGEQLSNWFKDRLWVGITHL 152

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              G+D         LA   +LP+VA  +    S +     D L A+ H+  V Q  + R 
Sbjct: 153  LSGHDANDYYYYRNLAAMWQLPMVACGDVHMHSRQRQPLQDTLTAIHHNCSVMQLGQRRF 212

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              +     R             L  T+ IA+RC F L+      P  +  E         
Sbjct: 213  -ANSERHLRGLNQLQKLYPGALLRETLNIAKRCHFSLEELRYEYPSEVVPEH----LTAT 267

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             +LR     G+  R   G       +Q  R+++++EL VIA + +  YFL V D + +A+
Sbjct: 268  EQLRFLVEQGVAKRWPNG------ISQSIRKQIEYELQVIAELNYESYFLTVEDIVAFAR 321

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              NI    GRGS A SV  Y L IT++ P + SLLFERF++ +R   PD D+DF   RR+
Sbjct: 322  SRNIL-CQGRGSAANSVVCYCLFITEVAPDQISLLFERFISRERNEPPDIDVDFEHQRRE 380

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  KYG +R A   T  S + ++A+RDVG+AL +    +++L + +         
Sbjct: 381  EVIQYIYQKYGRQRAALAATVISYRPRSAVRDVGKALGLDALFIEQLSQSMSWWDRQADL 440

Query: 489  LQAIAD--------DSRFREARLADPSVDRLLEISQKLEG-------LYRHASTHAAGIV 533
                          +   +     +   +   +I+              RH S H  G +
Sbjct: 441  QALFQQQGGSQEKKNQEKKNQEKKNQEENSQGQIATHFFKLLNEILGFPRHLSQHVGGFI 500

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            I   P+S LVP+     ++  V Q++   IE  GL+K D L L  L+ + +  D ++Q  
Sbjct: 501  ITKSPISTLVPVVNASMAERTVIQWDKYDIEALGLLKIDVLALGMLSAVHRCFDLISQHQ 560

Query: 594  VKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                 +  IP DD  TY +L T  ++G+FQ+ES      L  ++P C  D++  +++ RP
Sbjct: 561  QINLTMQSIPKDDPATYDMLCTADSVGVFQIESRAQMAMLPRLKPRCFYDLVIEIAIVRP 620

Query: 653  GPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            GPI   +V+    R+ G E +      I  +L+ T G+ ++QEQV+++A + +G+S  +A
Sbjct: 621  GPIQGGMVHPYLRRRQGLETVDYPSQEIKSVLERTLGIPVFQEQVIRLAMVAAGFSGGQA 680

Query: 711  DVLRRAMGKKIKEEM------DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            D LRRAM    K          + +++   G    G S   A  +F+ +  F  YGF +S
Sbjct: 681  DQLRRAMASSGKSGSGKNSTLAQFEQKLTDGMMARGYSLDFAERLFKQIQGFGVYGFPES 740

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            H+A++A+++Y +AW+K H+P  F  A +  +        +  QDA++  I+I P  V   
Sbjct: 741  HSASFALLAYVSAWLKCHHPAAFCCALLNSQPMGFYTPSQLLQDAQRHQIEIRPIDVCHS 800

Query: 825  CVDFKVG----------DNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRV 872
              +  +           +  I   L  IKG     A  I+ A ++  + F+SL       
Sbjct: 801  DWEHSLEMGSLEAGSSTEPAIRLGLCLIKGFSYRAAERIVLARSNSQQGFNSLPQLSR-- 858

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
             +  L++  L  L  AGAL     +R Q       I+ Y   +E  + +  E++ A    
Sbjct: 859  -AAGLSQADLALLSSAGALRSLTSNRRQAHWDALAIEDYRPLLEPAQNS--ESLPAI--- 912

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIR 991
                       S  +       +    G     HP+++ +   + +   K   +      
Sbjct: 913  ----------LSTPSEIEELNADYSSTGVSLGRHPMEILREQSKTLQRCKRTIDLPTLGN 962

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +R+A +V  +Q+  T  G  + ++T  +         +
Sbjct: 963  RRFVRIAGLVTGRQRPGTASG--VIFLTLEDETGNSNIVVW 1001


>gi|91788255|ref|YP_549207.1| DNA polymerase III subunit alpha [Polaromonas sp. JS666]
 gi|91697480|gb|ABE44309.1| DNA polymerase III, alpha subunit [Polaromonas sp. JS666]
          Length = 1068

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 261/1058 (24%), Positives = 432/1058 (40%), Gaps = 94/1058 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S   GA     + ++       A+AITD  ++   +   +     G+Q
Sbjct: 7    PDYAELHALSNFSFQRGASHAQELAERAFKLGYKALAITDECSVAGVVRAHEVTRELGLQ 66

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG--K 126
             + G +  +                     +V+L   A G+  L E ++          K
Sbjct: 67   LLPGAEFLV--------------QAANAFRLVVLPHNAAGWGNLCEFITEARRAGDEVDK 112

Query: 127  QSVRI-----CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             S R+       S L +      I+L+        +A                  LFG  
Sbjct: 113  GSYRVVLGETDFSRLADCE----ILLSPLPDAIHTQALC--------AHAEWATGLFGPN 160

Query: 182  LYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             ++ ++  +G D   R  Q+ ++A    + LVA  N L         HDV+ A+     V
Sbjct: 161  AWLAVELLQGLDDALRLQQLQEVAGHTGIRLVAAGNVLMHKRSRKPLHDVMTAIRLGRPV 220

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              +    +  +     R  M          L  T+E+A RCSF L     +     E   
Sbjct: 221  -HECGFALQANAEAHLRPRMRLADIYPAGLLRATLEVAARCSFNLDEIRNLYRYPREDMV 279

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +     LR     G   R  +G        +  R++L FEL +I  +++  +F+ V
Sbjct: 280  PPA-ETPARWLRRLTWQGAHTRYPRG------IPRKVRKQLGFELALIEELEYEMFFITV 332

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +++A +  I    GRGS A S   Y L +T ++P    LLFERF++ +R   PD D+
Sbjct: 333  HDIVRFANEQKIL-CQGRGSAANSAVCYCLGVTAVNPAESKLLFERFISRERREPPDIDV 391

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EVI+Y+  KYGH+R A   T    + ++A+RDVG+AL M    +++  K   
Sbjct: 392  DFEHERREEVIQYIYGKYGHDRAAIAATVIRYRPRSAIRDVGKALAMAPGLIEQFAKEHF 451

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                  V    + +  R          V + L++S +L G  RH S H  G V+    L+
Sbjct: 452  WFDGSEV----LEEKIRQAGLAGRVGPVLQWLDLSAQLIGFPRHLSQHVGGFVLTQGKLT 507

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            +LVP+      D  + Q++   +E  GL+K D L L  L+ +++ L  + Q         
Sbjct: 508  RLVPVQPASMEDRRIIQWDKDDLEAMGLLKVDVLALGMLSAIRRCLAMVNQTRGSQLQMH 567

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
                D  TY ++    T+G+FQ+ES      L  +QP    D++  V++ RPGPI   +V
Sbjct: 568  QIAPDEVTYDMICEADTVGVFQIESRAQMSMLPRLQPRSYYDLVVEVAIVRPGPIQGGMV 627

Query: 661  YNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            +   KN +      +I   +P ++P L+ T G+ I+QEQVMQIA + + ++  EAD LRR
Sbjct: 628  HPYLKNREILRNGGEIKPEYPALNPALERTLGIPIFQEQVMQIAMIAADFTPGEADDLRR 687

Query: 716  AMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +M     K  +D+   R ++    NG S   +  IF  +  F DYGF +SHAA++A + Y
Sbjct: 688  SMAAWKRKGGVDRFHGRLVNAMVNNGYSAEFSERIFSQILGFGDYGFPESHAASFAKLVY 747

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831
             + W+K H P  FLAA +  +        +  QDA +  +++    V     D  +    
Sbjct: 748  VSCWLKCHEPACFLAAMVNSQPMGFYSPSQLVQDAVRHGVEVRAVDVMHSDWDCTLEPAE 807

Query: 832  -----------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                                +   L  + G+    A  ++EA A   F S ED  SR   
Sbjct: 808  NKALPQHPGIYPGIKENQPAVRLGLRLVSGLREDAAIRLVEARAQAAFSSTEDLVSRA-- 865

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
             +LN   + +L  A AL      R Q +    +  K A  + K+       +        
Sbjct: 866  -RLNTLEINALAAADALLPLSGHRRQQVWDA-SAIKPAPGLLKSVPTHETPL-------- 915

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
                   +            + +  G     HP+ + +  L + G+    E  A   G  
Sbjct: 916  -------ELPDTPEGENILFDYQATGLTLRRHPVALLRERLARKGLLSASELNALPDGEE 968

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +    +V  +QQ +T  G+   +VT  +         +
Sbjct: 969  VAGCGIVTVRQQPQTANGT--IFVTLEDETGPVNVIVW 1004


>gi|327539745|gb|EGF26350.1| error-prone DNA polymerase [Rhodopirellula baltica WH47]
          Length = 1056

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 268/1039 (25%), Positives = 471/1039 (45%), Gaps = 68/1039 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +V L   S++S L+GA   + ++ + A      +AITD  ++   +     A   G+Q 
Sbjct: 15   RYVELHCRSNFSFLDGASHPDELVQRAAELGYEGLAITDRESIAGVVRGFSPAQELGLQY 74

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G ++                     P +VL  +    Y R+  ++S   +  + K   
Sbjct: 75   IVGTEV----------------HPTDAPPMVLWPTDRAAYGRMCRMLSTGRMRCE-KGRC 117

Query: 130  RICLSWLQEIGTE---GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             +    + E       G+I      S     A   +S Q        F+ +F DR Y+  
Sbjct: 118  ELSFEDIAEHAQGILAGVIATDESRSIEDQHAHVNDSRQFLR---GPFRDVFDDRGYLLA 174

Query: 187  QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              HRG  D  + + +  L+   ++PL+A  +  + S E    HD ++A++    V Q   
Sbjct: 175  SFHRGVDDAAKATWLRNLSLATDVPLLACGDVRYHSAERMALHDCVVAISQGKSVEQIQS 234

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R V   H+L++  E+  ++ D+P+A+  T E+A+RC+F L       P  +  E     
Sbjct: 235  DRLVNSQHHLRSLEEIAELYRDVPDAVARTTEVAQRCTFTLDQLKYEYPVELAPEGM--- 291

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  L+     G   R   G        +   + L  E+ +I  +++  YFL V D +
Sbjct: 292  -TSIEHLKRLTWEGARGRWPNGV------PEKVIETLRHEVTLIEDLQYEAYFLTVWDLV 344

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+   I    GRGS A SV  Y L IT +DP    LLFERF++ +R   PD D+DF  
Sbjct: 345  RFARSQEIL-CQGRGSAANSVVCYCLGITAVDPTHTDLLFERFISRERGEAPDIDVDFEH 403

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR+EV++Y+  KYG +R          +AK+A+R+VG+AL +    +D + KL  +   
Sbjct: 404  QRREEVLQYLYEKYGRDRAGMTAVVTCYRAKSAIREVGKALAISPDIIDAVAKLAGSYSR 463

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            +P   +   D           P   R L +++ L G  RH S H  G+V+    L +L  
Sbjct: 464  NPELPERCRD----AGLDPDTPLGRRFLYLTETLIGFPRHLSQHVGGMVMTAGSLCELCV 519

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPF 603
                      V Q+N   ++  G++K D L L  L+ +++  + +     +   LS IP 
Sbjct: 520  TENAAMPGRSVIQWNKDDLDDIGILKVDILALGMLSAIRRCFELVKDHHNRELSLSTIPP 579

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  TY ++    T+G+FQ+ES      L  ++P C  D++  V++ RPGPI   +V+  
Sbjct: 580  DDTPTYDMICAADTMGVFQIESRAQMSMLPRLKPRCYYDLVIEVAIVRPGPIQGNMVHPF 639

Query: 664  --RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               +         +  I  +L++T GV I+QEQ M++A + +G++  EAD LRRAM    
Sbjct: 640  LAARENPAAAKYPNDAIRKVLEKTLGVPIFQEQAMKLAVVAAGFTPGEADQLRRAMAAWR 699

Query: 722  KE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            +   +D+ + + + G   NG++   A N+F  +  F +YGF +SHAA++A++ Y + ++K
Sbjct: 700  RPGVIDRFRTKLLEGMKANGLNGEFAENVFRQIRGFGEYGFPESHAASFALLVYASCYLK 759

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------R 834
             HYP  F AA +  +        +  +DA+Q  +Q++P  +N   +  K+  +      +
Sbjct: 760  RHYPTAFCAALLDSQPMGFYAPAQLIRDAQQHGVQVLPVDINDSNIRSKLIPDLNRPHPK 819

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            +   L  ++G+ +  A+ I+ A  A+ PF +L D  +R    KL+R  + +L  A AL  
Sbjct: 820  LRLGLQMVRGLPSAVAQKIIVARDANGPFANLHDLTTRA---KLSRSNIATLADADALAS 876

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                R   +          Q + ++ +     + A  +    D    E+    + +   +
Sbjct: 877  IAQDRRAAVW---------QSLAQDDSGDSMPLLADLEP---DCSVPEELVPMSPAEEVK 924

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            N+    G     HP+  ++  L  +  K   +      G ++R+A +V+ +Q+  T KG 
Sbjct: 925  NDYATTGLSLKAHPVSFWRDDLNALRCKRASDLPKLRDGVHVRVAGLVLMRQRPGTAKG- 983

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             I +VT  +         F
Sbjct: 984  -ITFVTMEDETGSMNLVLF 1001


>gi|254523352|ref|ZP_05135407.1| DNA polymerase III, alpha subunit subfamily, putative
            [Stenotrophomonas sp. SKA14]
 gi|219720943|gb|EED39468.1| DNA polymerase III, alpha subunit subfamily, putative
            [Stenotrophomonas sp. SKA14]
          Length = 1036

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 287/1043 (27%), Positives = 458/1043 (43%), Gaps = 86/1043 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S   GA     +  + A     A+AITD  +L   +   Q A   G+ 
Sbjct: 6    PGYAELHCLSAFSFQRGASIAEELFARAAGQGYRALAITDECSLAGIVRAWQAAKTHGVA 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  ++                  P + LL +    Y  L +L++        K  
Sbjct: 66   LIVGAEFQVEDG----------------PKLALLCTDQTAYAGLCQLITTCRRRAA-KGE 108

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R     L  +               +   +       A   L   +  F DRL++ ++ 
Sbjct: 109  YRCLRDDLLGLPD------------GLLCLWLDRQP--AATDLELLRTGFNDRLWLAVEL 154

Query: 189  HRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H  +D     Q++Q     H LPLVA+ +            D L A+ H   V++    R
Sbjct: 155  HHEHDDAHRLQLLQAFGERHRLPLVASGDVHMHVRRRRALQDTLTAIRHRCSVAEAG-WR 213

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            + P+     R           E L  T+ IA RC F L+      PR +  E  D     
Sbjct: 214  LFPNGERHLRPRTALAQLYPRELLAETLRIAERCHFTLEQLQYTYPRELVPEGHD----P 269

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++ LR     G+  R   G           R++++ EL +I +  ++ YFL V D +++A
Sbjct: 270  DSWLRVLVERGIPWRWKNGIEPAQ------RKQIEHELALIRQKNYASYFLTVQDIVRFA 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  +I    GRGS A S   + L +T+IDP R +LLFERF++ +R   PD DIDF  +RR
Sbjct: 324  RSKDIL-CQGRGSAANSAVCFVLGVTEIDPARSNLLFERFISAERDEPPDIDIDFEHERR 382

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV N+YG ER A      S + ++A+RDV RAL +P  QV+ L   + +   H  
Sbjct: 383  EEVLQYVFNRYGRERAALTAVAISYRGRSAIRDVARALGLPMDQVNELGAAMDHWGGH-- 440

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                + +  R R      P + RLL ++ +L    RH S H  G VI + PLS LVP+  
Sbjct: 441  --VPLPETLRERGFDPETPLMRRLLSLTAELIDFPRHLSQHPGGFVISEHPLSTLVPVEN 498

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
               +D  V Q++   ++  GL+K D L L  LT ++K L  L Q G     +  I  DD 
Sbjct: 499  AAMADRTVIQWDKDDLDATGLMKVDCLALGMLTAIRKCLAMLQQHGLHSGRMDAIEDDDT 558

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             TY +++   T+G+FQ+ES      L  MQP    D++  V++ RPGPI   +V+   + 
Sbjct: 559  PTYDMISAADTIGVFQIESRAQMAMLPRMQPRNFYDLVIEVAIVRPGPIQGDMVHPYLER 618

Query: 667  GK------------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
             +             +     P ++ +   T GV ++QEQVMQ+A   +GY+  EAD LR
Sbjct: 619  RRLLREQGPEALDNLEEPLYPPQLERVFARTLGVPLFQEQVMQLAVDAAGYTPGEADALR 678

Query: 715  RAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+M    +    +  +E+ ++G  KNG S+    ++FE +  F DYGF +SHAA++A+++
Sbjct: 679  RSMAAWKRRGGLEPHREKLLAGMLKNGFSREYGEHLFEQIKGFGDYGFPESHAASFALLT 738

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--- 830
            Y + W+K H+P  F A+ +  +        +  QDAR+  I+++P  V     D  +   
Sbjct: 739  YASCWLKCHHPAAFTASLINSQPLGFYSPDQLLQDARRHGIRVLPLDVRHSDWDCTLDIS 798

Query: 831  -GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             G   I   L  I G      + IM   A +PFD + D C R     L+RR    L  AG
Sbjct: 799  KGATAIRLGLRLIDGCNEPAVQAIMRERARRPFDDVGDLCQRT---ALDRRQQGLLADAG 855

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            AL      R +    +  +                 +F H + T   ++ L   S     
Sbjct: 856  ALRGLSGHRHRARWDISGV------------ENRLPLFDHARATAEARVPLPLPSAW--- 900

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
               + + R  G     HP+   +  LR  G     +  A   G  +R+A +V  +Q+ +T
Sbjct: 901  EDMQADYRSTGTTLGRHPISFLRAQLRTRGCLDAAQLAAHGHGRRVRIAGLVRMRQRPQT 960

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
              G  + ++T  +      A  +
Sbjct: 961  ASG--VTFLTLEDETGMVNAVVW 981


>gi|300697395|ref|YP_003748056.1| DNA polymerase III subunit alpha [Ralstonia solanacearum CFBP2957]
 gi|299074119|emb|CBJ53663.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum CFBP2957]
          Length = 1081

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 264/1073 (24%), Positives = 434/1073 (40%), Gaps = 111/1073 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA   + ++ +  A    A+A+TD  ++   +     A  AG++
Sbjct: 18   PDYAELHCISNFTFLTGASHPHELVARAKALGYRALALTDECSVAGTVRAHVAAKEAGLK 77

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                     +VLL    +GY  L E +++  L    K  
Sbjct: 78   LIVGSRFTVRDAQGEPWL-----------RLVLLAQDIDGYGNLCECITQARLA-APKGD 125

Query: 129  VRICLSWLQEIGTEGLIMLTG---GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL--Y 183
             R+           GL  L G     +  +         Q    + L  +++FGDRL   
Sbjct: 126  YRLLADD-LAAPAAGLAHLRGMRHCLAILLPDY--DPDPQRLRAQALWCRQVFGDRLSMA 182

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            + L      DR+R   V  +A   ++PLVAT +    S +    HDVL A+  S  +++ 
Sbjct: 183  LELPLRHADDRHR-GTVAAVAEQADVPLVATGDVAMHSRQRKPLHDVLTAIRLSRPIAEC 241

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLP---EALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                             ++ F         L  +VE+A  C F L       P  +  E 
Sbjct: 242  GLELAPSAEQAMRTRMQLAFFYQGERGAPLLRRSVELAALCDFSLDEIEYEYPHEVVPEG 301

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +     L  + +AG   R  +            + ++  EL +IA +++  +FL V
Sbjct: 302  ----QTPAAYLHAEVMAGAARRYGK------AIPAKVQAQIAEELALIAELRYEPFFLTV 351

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +++A+  +I    GRGS A S   Y L IT++DP   + LF RFL+  R   PD D+
Sbjct: 352  YDVVRFARSRSIL-CQGRGSAANSAVCYCLGITEVDPQSGNTLFARFLSRARNEPPDIDV 410

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR+EVI+Y+  KYG  R A      + + ++ALRDVGRAL +    ++++ K   
Sbjct: 411  DFEHQRREEVIQYIYGKYGLTRTALAAALITYRTRSALRDVGRALGIDLGVIEQVAKAQA 470

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                      A A  +  +      P V R   +  +L G  RH S H  G VI    LS
Sbjct: 471  WWDG----QHAFAQHAGQQGLDPESPLVQRWAGLVGQLRGFPRHLSQHVGGFVIAQGKLS 526

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-------LAQRG 593
            +LVP+      D  V Q++   +E   L+K D L L  LT ++++LD         A+ G
Sbjct: 527  RLVPIENAAMQDRRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDMLDALPGRRARYG 586

Query: 594  VKVDLSLIPFD--DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                L++      D +TY ++    T+G+FQ+ES   +  L  ++P    D++  V++ R
Sbjct: 587  ASDKLAMQHLPDEDRDTYDMIGRAETIGVFQIESRAQQSMLPRLRPRTYYDLVIQVAIVR 646

Query: 652  PGPIDNIVVYNNRKN-------GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            PGPI   +V+   +          + +    P +  +L+ T GV I+QEQVM+IA    G
Sbjct: 647  PGPIQGGMVHPYLQRREAMRNGNPDCVTYPGPEVRAVLERTLGVPIFQEQVMEIAMKAGG 706

Query: 705  YSLSEADVLRRAM--GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            ++  EAD LRR M   K+     + Q+                   +   +  FA+YGF 
Sbjct: 707  FTADEADRLRRDMAAWKRKGNLTEHQERLMKEMVEVRHYDPAFVEALCRQMEGFAEYGFP 766

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            +SHAA +A ++Y ++++K H P  F AA +  +        +  Q+AR+  ++++P  V 
Sbjct: 767  ESHAAGFAKLAYVSSYLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRSRVRVLPADVT 826

Query: 823  TPCVDFKVGD--------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                D  + +          I   L+ I+G+    A  I+ A A  PF S+ED   R   
Sbjct: 827  ASAWDSTLHERPHGAGGQPDIRLGLSRIRGMRQPAAERIVAARAQAPFASVEDLAHRA-- 884

Query: 875  KKLNRRVLESLVFAGALDCFG--------------YSRMQLLQSLDNIQKYAQWVEKNRT 920
                           ALD                   R Q L     +Q+  Q     R 
Sbjct: 885  ---------------ALDRHDLSVLAAANALLPLAGHRRQALWQTLALQEPGQDHALLRQ 929

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
             +              ++ L      +       +   LG     HPL + +P L +M  
Sbjct: 930  ARPV------------EVPL-ALPAPSLGEEVVADYGSLGLSLQSHPLSLLRPRLERMRF 976

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                       G   R   +V  +Q+  T KG+   +V+  +         +P
Sbjct: 977  VTAATLAGYRNGQLARACGIVTVRQRPGTAKGT--IFVSIEDETGVVNVVLWP 1027


>gi|110636133|ref|YP_676341.1| DNA polymerase III, alpha subunit [Mesorhizobium sp. BNC1]
 gi|110287117|gb|ABG65176.1| error-prone DNA polymerase, DnaE-like protein [Chelativorans sp.
            BNC1]
          Length = 1096

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 283/1046 (27%), Positives = 456/1046 (43%), Gaps = 78/1046 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +  +  LQV S +S L GA S   +    A     A+ I D ++L   +   + A A
Sbjct: 1    MTAN-RYAELQVTSHFSFLRGASSAEELFAAAALMGIEALGIVDRSSLAGIVRAWEAAKA 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             GI+ +IGC+LD+                    SI++  +    Y RL  L+S       
Sbjct: 60   TGIRLVIGCRLDLACG----------------ASILVYPTDRAAYARLCRLLSLGKGR-A 102

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            GK    +  + L     EG I L               + +    RL   + +FGDR ++
Sbjct: 103  GKGKCHLEWTDLARY-AEGQIAL----------LVPDEADETCTMRLRRLRDVFGDRAHL 151

Query: 185  NLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ- 242
             L  R R  D+ R  ++  LA    +  V TN+ LF         DV+ A+ H+T V   
Sbjct: 152  ALTLRRRPNDQMRLHELSGLASRMGVACVVTNDVLFHEPGRRVLQDVVTAIRHTTTVDAL 211

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
              R     D YLK+  EM  +F+  PEAL  TVEIA RC F L       P       DD
Sbjct: 212  GFRRERHADRYLKSPEEMHRLFARYPEALARTVEIAERCRFSLDELVYQYPEER----DD 267

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                 +  L      G   R   G           R  L+ EL +IA++ ++ YFL V  
Sbjct: 268  PALSPQQTLERLTWEGAASRYPDGL------PDTVRATLNHELGLIAQLDYAPYFLTVHS 321

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+   I    GRGS A S   Y L +T IDP R  LLFERF++ +R   PD D+DF
Sbjct: 322  IVRFARSQGIL-CQGRGSAANSAVCYVLGVTSIDPDRNQLLFERFVSAERNEPPDIDVDF 380

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              DRR+EVI+++   YG +R A   T    +AK ALRDVG+AL +P   +  L   +   
Sbjct: 381  EHDRREEVIQWIYATYGRDRAALCCTVIRYRAKGALRDVGKALGLPEDLISTLSTQVWGW 440

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                V  Q +          +AD  +   LE+++ L G  RH S H  G V+    L  L
Sbjct: 441  SEQEVGPQHVDQ----LNLNMADRRLRLTLELARALIGFPRHLSQHPGGFVLTRDRLDDL 496

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLI 601
            VP+           +++   I+   ++K D LGL  L+ ++++LD LA+      DL+ I
Sbjct: 497  VPIEPAAMEARQTIEWDKDDIDALRMMKVDVLGLGMLSCMRRALDLLAEHKGVALDLASI 556

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P +D  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI   +V+
Sbjct: 557  PAEDPRTYAMIRRADTLGTFQIESRAQMSMLPRLKPRTFYDLVIEVAIVRPGPIQGDMVH 616

Query: 662  N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                R+ G+E +    P ++ +L +T GV ++QEQ M +A   +G++  EAD LRR+M  
Sbjct: 617  PYLRRREGREDVHYPKPELEAVLGKTLGVPLFQEQAMMVAVSCAGFTPGEADQLRRSMAT 676

Query: 720  KIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
                  + K +++ ++G   NG  +  A+  F+ L  F  YGF +SHAA++A+I+Y ++W
Sbjct: 677  FKFTGGVSKFRDKLVAGMVANGYEEAFALATFKQLEGFGSYGFPESHAASFALIAYASSW 736

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----- 833
            +K  +P  F  A +  +        +  +DAR   ++I P  +N+   D  +        
Sbjct: 737  VKCWHPDVFACALLNSQPMGFYADAQIVRDARDHGVEIRPVCINSSRWDCTLEPTADESR 796

Query: 834  -RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              +   +  +KG+       I+ A  +  F S++D   R     +    L  L  A A  
Sbjct: 797  FAVRLGMRMVKGLPNRDVAAIVAAREELRFASVDDLWRRA---GVPTAALTRLAEADAFR 853

Query: 893  -CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-----GTFSDKITLEKFSVE 946
              FG +R + L ++  ++                +FA                  +    
Sbjct: 854  PAFGLARREALWAIRPLRDE-----------PLPLFAAAARHEPEPAPELPEPPVRLRPM 902

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                    +    G     HP+   +  L +  I    +++    G  +  A +++ +Q+
Sbjct: 903  TDGREVVEDYGHTGLSLRAHPVSFLRADLARRRIVPCAQAMGARDGRWLETAGLILVRQR 962

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + KG  + +VT  + +       +
Sbjct: 963  PGSAKG--VMFVTVEDESGIANIVVW 986


>gi|325062696|gb|ADY66386.1| DNA polymerase III alpha subunit [Agrobacterium sp. H13-3]
          Length = 1091

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 280/1049 (26%), Positives = 458/1049 (43%), Gaps = 83/1049 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P +  LQV + +S L GA S + + ++       A+ I D N+L +     + A   G
Sbjct: 2    STPRYAELQVTTHFSFLRGASSCDELFEQAKNLGIEALGIVDRNSLAAIPRAYEAADNHG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+ +IGC+LD+D   ++ +                       Y RL  L+S +     GK
Sbjct: 62   IRLVIGCRLDLDDDLSVLV----------------YPMDRPAYGRLCRLLS-VGKKRGGK 104

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               R+    L   G EGLI++               +  +   RL   K  F DR Y+ L
Sbjct: 105  GKCRLTWDDLVAYG-EGLIVV----------LLADLADDLCALRLRRLKAAFADRAYMAL 153

Query: 187  Q-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KD 244
              R R  D+ R  ++  +A   ++P V TN+ LF   E     DV+  + H+  + +   
Sbjct: 154  SLRRRPNDQMRLFELSNMAAAADVPTVVTNDVLFHVPERRMLQDVVTCIRHNCTIDEAGF 213

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R     D Y+K   EM  +F+  PEAL  ++EIA+RC+F L+      P           
Sbjct: 214  RRERHADRYMKPPQEMHRLFARYPEALARSLEIAKRCTFSLKELVYQYPEERSLPG---- 269

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +  L          R   G        +   + L  EL +I R++++ YFL V   +
Sbjct: 270  LTAQQALEKLVWEAAAGRYPDGL------PEKVEKALHHELGLIGRLEYAPYFLTVNAIV 323

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            Q+A+  NI    GRGS A SV  Y L IT IDPL+  LLFERF++ +R   PD D+DF  
Sbjct: 324  QFARGENIL-CQGRGSAANSVVCYVLGITAIDPLKVDLLFERFVSEERREPPDIDVDFEH 382

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR+EVI++V N YG ++ A        + + ALRDVG+ L +P      L   +     
Sbjct: 383  QRREEVIQWVYNTYGRDKAALCSVVTRYRGRGALRDVGKVLGLPEDLTKLLSSQVWRW-- 440

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
               S        +     + D  +    E++ +L G  RH S H  G V+    L +LVP
Sbjct: 441  ---SEGVGEKQVQELNLNMEDRRLKLAFELANQLVGTPRHHSQHPGGFVLTHDRLDELVP 497

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            +      D  + +++   I+    +K D L L  L+ +++  + L +R  VK DL+ +P 
Sbjct: 498  IEPAAMDDRQIIEWDKDDIDIVKFMKMDCLALGMLSCMRRGFNMLEERTGVKYDLATVPQ 557

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662
            DD  TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI   +V+  
Sbjct: 558  DDDPTYAMIQKADTLGTFQIESRAQMSMLPRLKPKIFYDLVIQVAIVRPGPIQGDMVHPY 617

Query: 663  -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R++ KE+       +  +L +T GV ++QEQ M++A   +G+S  +AD LRRAM    
Sbjct: 618  LRRRDKKEEEHYPKEELRGVLGKTLGVPLFQEQAMRVAIECAGFSPGKADQLRRAMATFK 677

Query: 722  KE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                + K ++  I G    G  +  A  IF+ L  F  YGF +SHAA++A+I+Y ++W+K
Sbjct: 678  NVGTISKFRQDMIDGMVDRGYEQEFAERIFKQLEGFGSYGFPESHAASFALIAYASSWLK 737

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------- 833
             H+P  F  A +  +        +  +DAR   +++ P  VN    D  +          
Sbjct: 738  CHHPDIFCTALLNSQPMGFYAPAQIVRDARDHGVEVRPVCVNNSRFDCSLEPTGKKNANG 797

Query: 834  ----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                 +   L  +KG+    A  I+    D+ F S++D   R     +    L  L  A 
Sbjct: 798  KERYAVRLGLRMVKGLSNDHAAKIVACRQDRDFVSVDDLWRRA---GVPAAALVCLAEAD 854

Query: 890  AL-DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS---DKITLEKFS- 944
            A       SR + L ++  ++                +FA   G  +   D+++    + 
Sbjct: 855  AFLPSLSLSRREALWAIKALRDE-----------PLPLFAAAAGRENAVVDELSEPSVAL 903

Query: 945  -VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                       +   +G     HP+   +  L +  I    E+V    G  +  A +V+ 
Sbjct: 904  RPMTDGGEVVQDYGHVGLTLREHPMSFLRRDLSRRRIVSCAEAVRVRDGTWLETAGLVLV 963

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +Q+  + KG  + ++T  +      A  +
Sbjct: 964  RQRPGSAKG--VIFMTLEDETGIANAVLW 990


>gi|311744021|ref|ZP_07717827.1| error-prone DNA polymerase [Aeromicrobium marinum DSM 15272]
 gi|311313151|gb|EFQ83062.1| error-prone DNA polymerase [Aeromicrobium marinum DSM 15272]
          Length = 1133

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 280/1069 (26%), Positives = 462/1069 (43%), Gaps = 103/1069 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS YS L+GA    ++ ++       A+A+TD +    A  F++ A   G+  +
Sbjct: 57   YAELHCHSHYSFLDGASGPADLAEEAVRLGLSALALTDHDGFAGAPVFAEAAQEHGLATV 116

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L + +        Q     P    +++L   AEGY RL   ++  +L    K    
Sbjct: 117  FGAELSLGLPG-----PQNGVADPVGTHLLVLARGAEGYHRLAAAITDAHLHGDEKGRPV 171

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
              L  L   G +  I+LTG   G +  A        A   L     LFG D + V L  H
Sbjct: 172  YDLDQLAAHGRDHWIVLTGCRKGAVRHALATAGVSAAAAELDRLTALFGLDHVVVELTHH 231

Query: 190  RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEE-DYEAHDVLMAVAHSTVVSQKDRPR 247
               D   R   +  LA  H LP+VAT N    +      A  +    A  ++        
Sbjct: 232  GLPDDSRRNDALASLAADHGLPVVATGNVHHATPAGGRLAAAMAAIRARRSLADLDGWLP 291

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +   +L++ +EM + F+  P A+  +V IA + +F L+   P LP              
Sbjct: 292  PSGAAHLRSGAEMQARFARYPGAVARSVTIAEQIAFDLRSVTPRLPVRGVPAG----HTN 347

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR  A  G+  R A             R+R++ EL VIA   F GYFLIV D ++ A
Sbjct: 348  LSWLRELADRGIARRYAHDPGPA-------RERIERELAVIADKGFEGYFLIVHDIVREA 400

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  I    GRGS A S   YAL IT +D +R+ L FERFL   R   PD D+DF  DRR
Sbjct: 401  RERGIL-CQGRGSSANSALCYALEITAVDSIRYGLPFERFLASTRDEEPDIDVDFDSDRR 459

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI++V + YG    AQ+    + + ++A+RD  +AL     Q D   +          
Sbjct: 460  EEVIQWVYDTYGRRNAAQVANVITYRPRSAIRDAAKALGYSTGQQDAWSRSAERWGG--- 516

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                +  D+              ++E++++L G  RH   H+ G+++ +RP+ ++ P+ R
Sbjct: 517  ----LEPDAEL---------PAPVVELAEQLMGSPRHLGIHSGGMILTERPIGEVCPIER 563

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606
               +D  V Q++    E  GL+KFD LGL  L  L  +   +    G +  L  IP ++ 
Sbjct: 564  ARMTDRTVLQWDKDACEWMGLVKFDLLGLGMLGALDHTFGLVETHLGERWGLDTIPKEEP 623

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664
              + +L    ++G+FQ+ES      L  +QP    D+   ++L RPGPI    +  Y  R
Sbjct: 624  GVFDMLCRADSIGVFQVESRAQIGTLPRLQPRSYYDLAIEIALIRPGPIQGGAVHPYIRR 683

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723
              G+E +   HP+++P+L+ T+GV ++QEQ+MQ+A +L G +  EAD+LRRAM  K+  E
Sbjct: 684  ATGREPVTYPHPVLEPVLRRTKGVPLFQEQLMQMAIVLGGCTGDEADLLRRAMGSKRGIE 743

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +++ K++  +G +++GI+   A  I+  +  FA++GF +SHA ++A++ Y ++W+K HY
Sbjct: 744  RIERLKDQLFTGMAEHGITGEAADAIYVTIQSFANFGFAESHALSFALLVYASSWLKLHY 803

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP------------------------- 818
            P  FLAA +  +       +    DAR   +                             
Sbjct: 804  PAAFLAALLRNQPMGFYSPQSLVADARHHGVTTRGPDIVRSMATADLEPLDARSVRASGL 863

Query: 819  ----PSVNTPCVDFKV------------GDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
                     P   F                  +   L A++GVG   A  ++ A  ++PF
Sbjct: 864  DSCLHREQPPMTRFDPDGVDPTTTHRRDEGLAVRLGLDAVQGVGAEVAARVVAAREERPF 923

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
              + D   R     L    +ESL  AGA D FG +R Q L +                  
Sbjct: 924  ADMADVARRT---ALTVAQMESLATAGAFDSFGLTRRQALWN----------------AG 964

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
            + +      GT +           ++      +          HP++  + +L    +  
Sbjct: 965  YTDRPDQLPGTATTAPP-PTLPGMSAVETTLADLWSTRISPDRHPMEHLRELLTSEQVLS 1023

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
               ++A   G  +R+A ++  +Q+  T  G  + ++   +         
Sbjct: 1024 VAGAMAGEHGRRVRVAGLITHRQRPMTASG--VTFLNLEDETGMLNVVV 1070


>gi|170785363|gb|ACB37722.1| DNA polymerase III alpha subunit [Micromonospora chalcea]
          Length = 1031

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 308/916 (33%), Positives = 465/916 (50%), Gaps = 34/916 (3%)

Query: 146  MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQL 203
              TG  SG +           A K    ++ +FG D  ++ L  H    +R     + ++
Sbjct: 2    ATTGCPSGAVQTRLRLGQFDEAIKVASAYQDIFGKDNYFLELMDHGLDIERRVREGLTEI 61

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                 +P V TN+S +  E   EAHDVL+ V   + ++  +R R     Y    ++ +  
Sbjct: 62   GKKLGIPPVVTNDSHYTHEAQAEAHDVLLCVQTGSNIADPNRFRFEGGGYFIKSADQMRA 121

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
                   L+           +           + +      + EE+  R +   GL  R 
Sbjct: 122  VDSSELWLQGCRNTLLVAEKVDPAGMFEFHNLMPRFPIPEGETEESWFRKETFKGLARRF 181

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
              G         +Y      EL VI +M F  YFL+VADFIQWAK   I VGPGRGS AG
Sbjct: 182  PGGIPEGHVVQAEY------ELGVIIQMGFPSYFLVVADFIQWAKNQGIAVGPGRGSAAG 235

Query: 384  SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
            S+ AYAL ITD+DP+   L+FERFLNP+R+SMPD DIDF + RR EVI+YV +K+G ++V
Sbjct: 236  SLVAYALGITDLDPIPHGLIFERFLNPERVSMPDVDIDFDERRRGEVIKYVTDKWGEDKV 295

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN-DPAHPV--------SLQAIAD 494
            AQI TFG+++AKAA++D  R L  PY+  DR+ K +P       +             A+
Sbjct: 296  AQIATFGTIKAKAAIKDSARVLGYPYAVGDRITKAMPPAVMGKDIPLSGIFDPKHPRYAE 355

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
                R    +DP V ++++ ++ +EGL R    HAAG+++   P+ + +P+ R     + 
Sbjct: 356  AGEIRGLYESDPDVKKVIDTAKGIEGLIRQTGVHAAGVIMSAEPIIEHIPLMRRDSDGVI 415

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLT 613
            +TQF+    E  GL+K DFLGL+ LT++  ++       G  +DL  +  DD   Y LL 
Sbjct: 416  ITQFDYPTCESLGLLKMDFLGLRNLTIIDDAVKNIQLNHGKDLDLLGLDLDDKAAYELLA 475

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKI 671
               TLG+FQL+   MR  L  M+PD  EDI A+++LYRPGP+  D+   Y  RKNG ++I
Sbjct: 476  RGDTLGVFQLDGGPMRSLLRLMKPDNFEDISAVLALYRPGPMGVDSHTNYALRKNGLQEI 535

Query: 672  VSIHPLIDPML----KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
              IHP ++  L      T G+I+YQEQV + AQ+L+GY+L +AD+LRRAMGKK KE +DK
Sbjct: 536  TPIHPELEEPLREILAPTHGLIVYQEQVQRAAQILAGYTLGQADLLRRAMGKKKKEILDK 595

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +   F  G  + G S      ++++L  FA Y FNK+H+AAY ++SY TA++K HYP E+
Sbjct: 596  EFVPFRDGCRERGYSDEAIQAVWDVLVPFAGYAFNKAHSAAYGLVSYWTAYLKAHYPAEY 655

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            +A  +T   D+ +K+  +  + R+  IQ++PP VNT    F      I + LAAI+ VG 
Sbjct: 656  MAGLLTSVGDDKDKMALYLSECRRMGIQVLPPDVNTSAGPFTPVGKDIRFGLAAIRNVGA 715

Query: 848  TTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 IM    +   +    DF ++VD+   N++ +ESL+ AGA D  G+SR  LL    
Sbjct: 716  NVVASIMRCRQEKGEYADFYDFLAKVDAVVCNKKTIESLIKAGAFDVMGHSRKGLLAVHA 775

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFS----DKITLEKF--SVENSSVRFENEQRVLG 960
            +       V++       ++F    G       +   +     +  +   +   E+ +LG
Sbjct: 776  DAIDAYADVKRKEAVGQYDLFGAGFGDTETVGGNTTVMPTIGEAEWDKRDKLAFEREMLG 835

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVA---TIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             Y S HPL   + +L                   G  + LA ++   Q++ T++G     
Sbjct: 836  LYVSDHPLFGLEHVLGAAADCTIAALSEEGTVPDGAVVTLAGILSGVQRRVTKQGRAWAS 895

Query: 1018 VTFSEPAKEYEANFFP 1033
             T  + A   EA FFP
Sbjct: 896  ATLEDLAGGVEALFFP 911


>gi|258653321|ref|YP_003202477.1| error-prone DNA polymerase [Nakamurella multipartita DSM 44233]
 gi|258556546|gb|ACV79488.1| DNA polymerase III, alpha subunit [Nakamurella multipartita DSM
            44233]
          Length = 1092

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 276/1034 (26%), Positives = 468/1034 (45%), Gaps = 62/1034 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS++S L+GA +   ++ +       A+AITD + L+  + F++ A  AG++ +
Sbjct: 55   YAELHCHSAFSFLDGASTPEQLVAEAVRLGLEALAITDHDGLYGIVRFAEAAREAGLRTL 114

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L + + +      Q   P P    +++L    EGY RL   +SR  L    K    
Sbjct: 115  YGAELSLGLPE-----PQLGVPDPVGEHLLVLARGQEGYHRLSTQISRAQLAGGAKGRPV 169

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL-QR 188
              L  L +      ++LTG   G + RA   +    A + L      FG D + V L   
Sbjct: 170  YDLDELADAAGGHWLILTGCRKGSVRRALQRHGPARAAEELRALMDRFGRDNVVVELTTS 229

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE-EDYEAHDVLMAVAHSTVVSQKDRPR 247
                D      +  LA   +LP+VAT  + + +  E   A  +    A  ++        
Sbjct: 230  LAPTDDEDNDALAALAAELDLPIVATTAAHYATPAEGRIAAAMAAVRARRSLEEADPYLP 289

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              P  +L++ +EM ++F+  P A+     I R CSF L++ AP LP +      D    E
Sbjct: 290  AGPGSHLRSGAEMAALFARYPAAVPTAAAIGRECSFDLRLLAPKLPPYDVPPGHD----E 345

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR   +AG   R      +       Y  +++ EL +IAR+ F GYFLIV D + + 
Sbjct: 346  NSHLRQLTLAGAARRYG----SPDDRPDAY-AQIEKELGIIARLDFPGYFLIVNDIVDFC 400

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++++I    GRGS A S   YAL IT +D +R+ LLFERFL P+R   PD D+D   DRR
Sbjct: 401  RRSDIL-CQGRGSAANSAVCYALGITAVDAVRYELLFERFLAPERDGPPDIDVDIESDRR 459

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+YV   YG ++ AQ+    + + + A+RD+ +AL     Q D   K +        
Sbjct: 460  EEVIQYVFATYGRDKAAQVANVNTYRPRMAVRDMAKALGHSPGQQDAYSKQLDGWV---- 515

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                          + A      +L ++ +++   RH S H+ G+VI DRP++ + P+  
Sbjct: 516  ----------PLAGQDASGIPADVLALAHRIQDYPRHLSIHSGGMVICDRPVASVCPVEW 565

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDH 606
                +  V Q++       GL+KFD LGL  L+ L  ++D + +    ++D + +  ++ 
Sbjct: 566  ARMENRSVLQWDKDDCAAMGLVKFDLLGLGMLSALHYAVDLIREHEGLEIDFAQLDLEEP 625

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNR 664
              Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI       Y  R
Sbjct: 626  AVYEMLQRADSVGVFQVESRAQMATLPRLKPRTFYDLVVEVALIRPGPIQGNAVHPYIRR 685

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723
            +NG+E++   HP+++  L +T G+ ++QEQ+MQ+A  ++G+   EAD LRRAM  K+ K 
Sbjct: 686  RNGQEEVTYDHPVMEKSLAKTLGIPLFQEQLMQLAVDVAGFDAGEADQLRRAMGAKRSKG 745

Query: 724  EMDKQKERFISGAS-KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            +M+K K R   G   ++GI+  +A  I+E L  FA++GF +SHA ++A + + +AW+K H
Sbjct: 746  KMEKLKARLYDGMRERHGITGPVADRIYERLLAFANFGFAESHALSFAALVFYSAWLKLH 805

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYY 837
            +P  F AA +  +       +    DAR+  + I  P +N       +         +  
Sbjct: 806  HPAAFCAALLRAQPMGFYSPQSLVADARRHGVSIRRPDINASRAHADLEPGPDGRPAVRL 865

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  ++ +G   A  I+     + + SL++    V    L     E+L  AGALD    +
Sbjct: 866  GLDEVRTIGDELAARIVARRPTEGYRSLDELTRTV---TLTAPQAEALATAGALDTLVGT 922

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R                      ++   +     G     +        +       +  
Sbjct: 923  RR----------HALWAAGAAAGDRAGTLAGSVVG-----LDAPALPGMSDIELTVADIW 967

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
              G     +P +  +  L   G+K       T  G  + +A +V  +Q+  T  G  + +
Sbjct: 968  ATGISPQTYPTEFSRDQLDAWGVKTAAALKDTAHGTRVLVAGVVTHRQRPATASG--VIF 1025

Query: 1018 VTFSEPAKEYEANF 1031
            +   +         
Sbjct: 1026 INLEDETGMLNVIC 1039


>gi|307301696|ref|ZP_07581455.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C]
 gi|307316281|ref|ZP_07595725.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83]
 gi|306898121|gb|EFN28863.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti AK83]
 gi|306903394|gb|EFN33983.1| DNA polymerase III, alpha subunit [Sinorhizobium meliloti BL225C]
          Length = 1116

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 255/1063 (23%), Positives = 439/1063 (41%), Gaps = 90/1063 (8%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F  L   +++S LEGA     ++          + I D N++   +    KA  
Sbjct: 1    MSADAVFCELGARTNFSFLEGAAPAEEMVVFAKKAGLAGLGIADRNSVAGVVRAHAKAKV 60

Query: 65   AG--IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
             G   QP  G +L                     P I+       G+  L  L+S   L 
Sbjct: 61   EGYPFQP--GARLVFADG---------------TPDILAYPKNRRGWGHLCRLLSAGNLR 103

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             + K    + L+ L E                + +       +  E  L T K+  G+RL
Sbjct: 104  SK-KGDCTLHLADLLEWQE--------ELLLIVMQGEGRPEPESLEVLLGTLKEHAGNRL 154

Query: 183  YVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ L  H  G+DR+  + +  +A    + L+ATN++L+         DV+ ++     ++
Sbjct: 155  YLGLAPHYDGFDRHDFAVLAAIARKAGIGLLATNDALYHDPHYRPLADVVTSIREHVPIA 214

Query: 242  Q-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                  +   + +LK   EM  +FSD PEA+ NT +  R  +F L   +         + 
Sbjct: 215  GAGFLLQKNAERHLKGPREMARLFSDYPEAIANTRKFFRELAFSLDELSHQY-----PDE 269

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +   +     LR     G   R  +G        +   +++D+EL +I   K+  YFL V
Sbjct: 270  NADGETPAESLRRLVAEGAAERYPEGV------PEKVMRQIDYELELIHDKKYEPYFLTV 323

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
               +++A+  NI    GRGS A S   + L ITD+DP +F+LLF+RFL+ DR   PD D+
Sbjct: 324  HKLVKFARSVNIL-CQGRGSAANSSVCFCLGITDVDPQKFTLLFDRFLSKDRDEPPDIDV 382

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EVI+Y+   YG E         S ++++A R+V +A  +       L   I 
Sbjct: 383  DFEHERREEVIQYIYRTYGKEHAGLTAAVISYRSRSAGREVAKAFGLSEDVQSALVSSIW 442

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                 P +     + ++      ADP   R+L  +  L    RH S H  G VI    L 
Sbjct: 443  GWGTSPFT----EEQAKGAGLDAADPLTRRVLAYASLLMNFPRHLSQHVGGFVITRDRLD 498

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL-- 598
            ++VP+      D  + +++   +++  ++K D L L  LT L K    L     +     
Sbjct: 499  EVVPIMNTAMPDRYMIEWDKDDLDELKILKVDVLALGMLTCLAKGFKLLEAHYGEPITLA 558

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             +        Y ++    T+G+FQ+ES      L  +QP  + D++  V++ RPGPI   
Sbjct: 559  EIYQDHRDAVYDMICRADTVGVFQIESRAQMSMLPRLQPREMYDLVIEVAIVRPGPIQGN 618

Query: 659  VVYNNRKNGKEK-----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            +V+   K  + +     +V   P +  +L+ T GV ++QEQ MQIA   +G+S SEAD L
Sbjct: 619  MVHPYLKRREAQRRGEAVVYPSPELKAVLERTLGVPLFQEQAMQIAITAAGFSPSEADRL 678

Query: 714  RRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM    +   +   + + + G   N   +  A   F  +  F +YGF +SHAA++A +
Sbjct: 679  RRAMATFKRTGTIHTFERKMVEGMVANDYEREFAERCFNQIKGFGEYGFPESHAASFASL 738

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y +AW+KT+YP  F AA +  +        +  +DAR+  ++++P  +N    D  +  
Sbjct: 739  VYASAWLKTYYPDIFCAALLNAQPMGFYAPAQLVRDAREHGVRMLPVDINHSDWDALLEG 798

Query: 833  -----------------------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                                     +      +KG+  T  + ++    +  + S+ D  
Sbjct: 799  EGAFDKNAVHPRHASMREVIKTRKAVRLGFRLVKGLKQTDMKALVARRGEG-YRSVHDLW 857

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             R     L+R VLE L  A A    G  R   L ++  + + +             +F  
Sbjct: 858  LR---SGLSRSVLERLADADAFRSIGLDRRAALWAVKALDEQSAVER-------LPLFEG 907

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
                              +  +  ++ R L      HP+   +    +MGI    +  AT
Sbjct: 908  AGSDDLQIEPKVALPDMPAGEQVIHDYRTLTLSLKAHPVSFMREDFSRMGILRSRDLAAT 967

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              G  + +A +V+ +Q+  +  G  + ++T  +         +
Sbjct: 968  ATGRWVTVAGLVLVRQRPGSANG--VIFMTIEDETGIANIIVW 1008


>gi|221199957|ref|ZP_03573000.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2M]
 gi|221206888|ref|ZP_03579900.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2]
 gi|221173543|gb|EEE05978.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2]
 gi|221180196|gb|EEE12600.1| DNA polymerase III, alpha subunit [Burkholderia multivorans CGD2M]
          Length = 1065

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 270/1053 (25%), Positives = 449/1053 (42%), Gaps = 72/1053 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S++S L GA     ++ +    +   IAITD  +L  A      A AAG+ 
Sbjct: 3    PAYAELFCRSNFSFLHGASHAEELVARAVKLRYRGIAITDECSLAGAPRMHVAARAAGLP 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG   ++   +       G  P P    +VLL    EGY  L EL+S    +   K +
Sbjct: 63   LIIGSYFEVTPDE----APPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMAAPKGT 117

Query: 129  VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             ++    L     E   L  +    +  +    +   + V + ++  F+  FG+R  + L
Sbjct: 118  YKLTPRMLSRPPEEFAHLRGMPDCFAILVP--VYPVRADVLDAQVAWFRATFGERARLGL 175

Query: 187  -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV-VSQKD 244
             Q  R  D  +  ++        + +VA  +            DV+ A+   T       
Sbjct: 176  VQLQRALDGPQRDEIRAAGARRGVRVVALGDVTMHRRSCKPLQDVMTAIRLGTPVSECGY 235

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                  + +L++ + +  +FS    A   T  I   C F L       P  I        
Sbjct: 236  ALAPNAEQHLRSLARIAKLFSADEIA--QTCAILDACHFELDTLRYEYPDEIVPPG---- 289

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + L  +  AG   R  QG        +   Q++ +EL++IA++ +  +FL V D +
Sbjct: 290  HTPTSYLEQETKAGAIERYPQGV------PEKVEQQIRYELDLIAKLSYEPFFLTVYDIV 343

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+  NI    GRGS A S   Y L IT++DP + +LLFERF++ +R   PD D+DF  
Sbjct: 344  KYARSRNIL-CQGRGSAANSAVCYCLGITEVDPEQSTLLFERFISENRGEPPDIDVDFEH 402

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR+EVI+++  KYG  R A      + + +  LR+ G+AL +    VDR+ K       
Sbjct: 403  QRREEVIQHIYEKYGKHRAAIAAAVSTYRPRGVLRETGKALGVDPMLVDRVAKGHRWFDG 462

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                LQ             A P +    E++ +L    RH S H+ G VI    L++LVP
Sbjct: 463  SRDLLQQFEMV----GLDPATPLIRTWAELAARLLNFPRHLSQHSGGFVISRGKLTRLVP 518

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG------VKVDL 598
            +         V Q++   +E  GL+K D L L  L+ L ++ D +               
Sbjct: 519  VENAAMDGRRVIQWDKDDLEALGLLKVDVLALGMLSALHRAFDMITAWRGLQPDGKPFGF 578

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP  D +TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI   
Sbjct: 579  DHIPRHDDDTYDMICRADTVGVFQIESRAQMSMLPRLKPREYYDLVIQVSIVRPGPIQGG 638

Query: 659  VVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
             V+   K  +        ++      +  +L+ T GV I+QEQVMQIA + +G++  EAD
Sbjct: 639  AVHPYLKRRRIVAGEEEGEVTYPSDALKAVLERTLGVPIFQEQVMQIAIVAAGFTPDEAD 698

Query: 712  VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRRAM     K ++ K  ++ ++G  + G ++  A  IFE +  F +YGF +SHAA++A
Sbjct: 699  ALRRAMAAWKRKGDLGKYHDQIVNGMLERGYTREFAEQIFEQIKGFGEYGFPESHAASFA 758

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++Y ++W+K H P  F+AA +  +        +  QDAR+  + + P  V     +  +
Sbjct: 759  KLAYASSWLKCHEPAIFVAALLNSQPMGFYAPAQLVQDARRHGVTVFPVDVTKSNWETSL 818

Query: 831  G----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                       D  +   L+ ++G G   AR I  A A  PF++++    R    +L RR
Sbjct: 819  EALPGAAPPDGDPAVRLGLSLVRGFGEAAARRIEAARAAGPFENVDALARRA---QLERR 875

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             LE+L  A AL      R   L             +        ++ A      +++   
Sbjct: 876  DLEALAAANALATLAGHRRDALW------------QAVAAAPDRDLLAAAPIDEAER--- 920

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                  + +     +    G   + HP+ + +P LR   +    E      G   R   +
Sbjct: 921  PALGAPSEADEILADYDTTGLTLNRHPVALLRPALRARRLSSAAELRDRPDGRLARACGI 980

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V+++Q   T KG  + ++T  +          P
Sbjct: 981  VIARQMPGTAKG--VLFMTLEDETGCVNVIVRP 1011


>gi|329909587|ref|ZP_08275095.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium
            IMCC9480]
 gi|327546430|gb|EGF31433.1| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium
            IMCC9480]
          Length = 1039

 Score =  562 bits (1449), Expect = e-157,   Method: Composition-based stats.
 Identities = 257/1043 (24%), Positives = 459/1043 (44%), Gaps = 74/1043 (7%)

Query: 5    LEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            + +  P +  L   S+Y+ L GA     ++++ A     A+AITD  +L   +    +A 
Sbjct: 1    MPQQLPPYAELHCLSNYTFLRGASHPEELIERAAGLGYTALAITDECSLAGVVRAHIEAK 60

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
              G+  +IG ++ +                     ++LL +   GY  L +L++      
Sbjct: 61   KHGLALLIGTEVTLRCGMK----------------LLLLATNRNGYGNLSQLITNGRRRA 104

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
              K   ++ +         GL    G  +  +         +   ++      +F  R +
Sbjct: 105  D-KGCYQLSIEDFVTPELAGL---AGCLAILLPERAHGGDQRQ--QQAQWLAHVFEARAW 158

Query: 184  VNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            + ++  HR  D     ++  L+    LPLVA  +            D + A+     +++
Sbjct: 159  IAVELLHRLDDDAWLQRLSALSQQTGLPLVAGGDVHMHLRSRKPLQDTVTAIRLGKPIAE 218

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                          RS +          LE T+ +A+RC+F L       P  I      
Sbjct: 219  CGLALHPNA-EQHLRSRLRLAQLYPRALLEQTLVVAQRCTFSLDELRYEYPLEIVPAG-- 275

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                 +  LR+    G   R A G           +++++ EL +I  + +  YFL V D
Sbjct: 276  --ATLDGHLRSLTYEGAARRFATG------IPAKVQEQIEHELALIHDLAYEPYFLTVHD 327

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+  +I    GRGS A SV  Y L IT++DP R S+LFERF++ +R   PD D+DF
Sbjct: 328  IVRFARSRDIL-CQGRGSAANSVVCYCLGITEVDPERMSMLFERFISKERNEPPDIDVDF 386

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EVI+Y+  KYG  R A      + + ++AL+DVG+AL + + Q++RL       
Sbjct: 387  EHQRREEVIQYIYRKYGRHRAALTGVHITYRPRSALKDVGKALGIDFDQINRLSHSHQWW 446

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                VS + + +             V +LLE+++ L G  RH S H  G VI    L++L
Sbjct: 447  EDGQVSDERLRES----GFDPDASLVQKLLELTRTLVGFPRHLSQHPGGFVIARDNLARL 502

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLI 601
            VP+      +  + +++   ++  G++K D L L  L+ ++++LD +  +RG    +  +
Sbjct: 503  VPIENAAMPERSMIEWDKNDLDALGILKIDVLALGMLSAIRRALDLIGLRRGDIFTMQDV 562

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P +D  TY ++    T+G+FQ+ES      L  ++P+    ++  V++ RPGPI   +V+
Sbjct: 563  PAEDPATYAMICAADTVGVFQIESRAQMSMLPRLRPEKFYHLVIEVAIVRPGPIQGGMVH 622

Query: 662  N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                R+ G E+    +  +   L+ T GV I+QEQVMQ+  L +G++  +AD LRR+M  
Sbjct: 623  PYLRRRQGLEQATYANADMKLALERTLGVPIFQEQVMQVVMLAAGFTPGQADDLRRSMAA 682

Query: 720  K-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
               K  + K +E  I G    G +   A  +F  +  F +YGF +SHAA++A++ Y +AW
Sbjct: 683  WKRKGGLQKFREPVIEGMLARGYNLEFAEGLFSQIEGFGEYGFPESHAASFALLVYVSAW 742

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR---- 834
            +K H P  FLAA +  +        +  QDAR+  ++++P  V    V+  + ++     
Sbjct: 743  IKRHEPAAFLAALLNSQPMGFYGPSQLVQDARRHGVRVLPVDVMISEVECTLEEHAAELN 802

Query: 835  -----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                 +   L  ++G+    A+ ++E  A +PFDS++D   R +  + + + L +     
Sbjct: 803  AAQPDVRLGLCLVRGLSGQAAQRVIEVRAMRPFDSVDDMARRAELDQHDLKALAAANAL- 861

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
                    R Q    +  +                 +  H   T    +TL   S  +  
Sbjct: 862  --FALAGHRRQANWEVAALL------------PVTPLLRHAPIT-EAALTLPAASEGHD- 905

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 + R  G   + HPL + +P LR+M +    E      G  +R + +V  +Q+  T
Sbjct: 906  --IVADYRSTGLTLNRHPLALLRPRLRQMKLSTALELKGFGNGKLVRTSGLVTMRQRPGT 963

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
             KG+   ++T  +         +
Sbjct: 964  AKGTM--FITLEDETGVINVILW 984


>gi|110635592|ref|YP_675800.1| DNA polymerase III, alpha subunit [Mesorhizobium sp. BNC1]
 gi|110286576|gb|ABG64635.1| error-prone DNA polymerase, DnaE-like protein [Chelativorans sp.
            BNC1]
          Length = 1126

 Score =  562 bits (1448), Expect = e-157,   Method: Composition-based stats.
 Identities = 241/1069 (22%), Positives = 444/1069 (41%), Gaps = 90/1069 (8%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P++    V S++S L GA     ++         A+ + D N +   +    ++  
Sbjct: 1    MTAAPAYAEFGVQSNFSFLRGASRPEELVVAAKLLGFSAMGLADRNTVAGVVRAWVQSK- 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPF------PTVPSIVLLVSTAEGYQRLIELVSR 118
                        I + +  +       P          P I+      +G+  L  ++++
Sbjct: 60   -----------YIKLTEESEPARLPYHPGCRLVFSDGTPDILAYPQDRQGWAHLCRMLTK 108

Query: 119  MYLLDQ-GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
              + ++  K +  +      E G +  + +      P D+             L   K  
Sbjct: 109  ANMREESEKGAPVLLAEDFWEWGDQISLAILPDLQAPGDKTL---------AFLKAVKAR 159

Query: 178  FGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            F + +++ +   + G DR+R +Q   +A    +PL+ATN+ L+ + E     DVL A+  
Sbjct: 160  FKESVWLAVAPSYGGDDRWRLAQAAGMAEAVGVPLMATNDVLYHAAEQRSLQDVLTAIRL 219

Query: 237  STVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
            +T +S+         + ++K   EM  +F   PEAL  T+  A   SF L       P  
Sbjct: 220  NTTISEAGFALEANAERHMKPPEEMARLFRSYPEALAETLRFAESLSFSLSELEHNYPDE 279

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            + +         + EL      G + R  +G        +  ++ +  EL+++ R  ++ 
Sbjct: 280  VSESGLP----AQEELERLTWEGAKERFPRG------IPEAQKELIRKELDLVKRKNYAR 329

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL V D +++A+   I    GRGS A S+  Y L ITD+ P     L ERF++ +R   
Sbjct: 330  YFLTVYDIMRYARSQGIL-CQGRGSAANSLICYCLRITDVGPDIMDHLLERFISEERGEP 388

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DF   RR+EVI Y+  KY  +  A   +  S + + ALR+V + L +       L
Sbjct: 389  PDIDVDFEHQRREEVIAYIYEKYSEKHTALACSVISYRGRLALREVAKVLGLSEDVTSAL 448

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
               I    +  V   AI           ADP   +++ ++  + G  RH S H  G VI 
Sbjct: 449  SGSIWGWSSEEVGDTAIKA----AGLNKADPRTKQMVNLANGIMGFPRHLSQHVGGFVIT 504

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
               L ++VP+ +    +  + +++   ++  GL+K D L L  L+ LQ++   L ++   
Sbjct: 505  KDRLDEIVPIVKTAMEERKMVEWDKDDLDNVGLLKVDVLALGMLSCLQRAFGLLKEKYDV 564

Query: 596  VD-------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             D       L+ I  +    Y +++   T+G+FQ+ES      L  +QP    D++  V+
Sbjct: 565  RDDYGRPLELATIQPELEPVYDMISRADTIGVFQVESRAQMSMLPRLQPRTFYDLVIEVA 624

Query: 649  LYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            + RPGPI   +V+    R+  +EK   + P ++ +LK+T GV ++QEQ M+IA +  G+ 
Sbjct: 625  IVRPGPIQGDMVHPYLKRRERQEKPEYVRPELEAILKKTLGVPLFQEQAMKIAIVAGGFE 684

Query: 707  LSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
              EAD LRRAM    +   +   K + I+G    G  +  A   F  +  F +YGF +SH
Sbjct: 685  PWEADRLRRAMATFKRTGTVTDYKHKLINGMEARGYPRAFAERCFRQIEGFGEYGFPESH 744

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            AA++A++ Y +AW K +YP  F AA +  +        +  +DAR+  ++I    +N+  
Sbjct: 745  AASFALLVYASAWFKAYYPDVFCAAILNSQPMGFYAPAQLVRDAREHGVEIREVDINSSK 804

Query: 826  VDFKVG----------------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
             D  +                       ++ +      +KG+       ++       + 
Sbjct: 805  WDCTLEEASFDPARVADRHAGMRSIIRTEDAVRLGFRQVKGLAEADMEQLVRNRGVG-YR 863

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
            S+ D   R     L++ V+  L  A A    G  R   L ++       Q +++ R    
Sbjct: 864  SVRDLWLR---SGLSKSVIARLAEADAFRSLGLDRRTALWAV-------QALDETRAADR 913

Query: 924  ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
              +    +    +     +      S+   ++ + L      HP+   +  L    +   
Sbjct: 914  LPLLDRPEINLGEDEPEVRLPSMPLSMHVVHDYQSLSLSLKAHPVSFLRDQLAAEKVVPN 973

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            E       G  + +A +V+ +Q+  T K   + ++T  +         +
Sbjct: 974  ERLQDLDNGRRVSVAGLVLIRQRPGTAKN--VIFMTIEDETGIANIVVW 1020


>gi|15966924|ref|NP_387277.1| putative DNA polymerase III alpha chain protein [Sinorhizobium
            meliloti 1021]
 gi|71151850|sp|Q92LA6|DNE21_RHIME RecName: Full=Error-prone DNA polymerase 1
 gi|15076197|emb|CAC47750.1| Putative DNA polymerase III alpha chain [Sinorhizobium meliloti 1021]
          Length = 1116

 Score =  562 bits (1448), Expect = e-157,   Method: Composition-based stats.
 Identities = 254/1063 (23%), Positives = 438/1063 (41%), Gaps = 90/1063 (8%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     F  L   +++S LEGA     ++          + I D N++   +    KA  
Sbjct: 1    MSADAVFCELGARTNFSFLEGAAPAEEMVVFAKKAGLAGLGIADRNSVAGVVRAHAKAKV 60

Query: 65   AG--IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
             G   QP  G +L                     P I+       G+  L  L+S   L 
Sbjct: 61   EGYPFQP--GARLVFADG---------------TPDILAYPKNRRGWGHLCRLLSAGNLR 103

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             + K    + L+ L E                + +       +  E  L T K+  G+RL
Sbjct: 104  SK-KGDCTLHLADLLEWQE--------ELLLIVMQGEGRPEPESLEVLLGTLKEHAGNRL 154

Query: 183  YVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ L  H  G+DR+  + +  +A    + L+ATN++L+         DV+ ++     ++
Sbjct: 155  YLGLAPHYDGFDRHDFAVLAAIARKAGIGLLATNDALYHDPHYRPLADVVTSIREHVPIA 214

Query: 242  Q-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                  +   + +LK   EM  +FSD PEA+ NT +  R  +F L   +         + 
Sbjct: 215  GAGFLLQKNAERHLKGPREMARLFSDYPEAIANTRKFFRELAFSLDELSHQY-----PDE 269

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +   +     LR     G   R  +G        +   +++D+EL +I   K+  YFL V
Sbjct: 270  NADGETPAESLRRLVAEGAAERYPEGV------PEKVMRQIDYELELIHDKKYEPYFLTV 323

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
               +++A+  NI    GRGS A S   + L ITD+DP +F+LLF+RFL+ DR   PD D+
Sbjct: 324  HKLVKFARSVNIL-CQGRGSAANSSVCFCLGITDVDPQKFTLLFDRFLSKDRDEPPDIDV 382

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EVI+Y+   YG E         S ++++A R+V +A  +       L   I 
Sbjct: 383  DFEHERREEVIQYIYRTYGKEHAGLTAAVISYRSRSAGREVAKAFGLSEDVQSALVSSIW 442

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                 P +     + ++      ADP   R+L  +  L    RH S H  G VI    L 
Sbjct: 443  GWGTSPFT----EEQAKGAGLDAADPLTRRVLAYASLLMNFPRHLSQHVGGFVITRDRLD 498

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL-- 598
            ++VP+      D  + +++   +++  ++K D L L  LT L K    L     +     
Sbjct: 499  EVVPIMNTAMPDRYMIEWDKDDLDELKILKVDVLALGMLTCLAKGFKLLEAHYGEPITLA 558

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             +        Y ++    T+G+FQ+ES      L  +QP  + D++  V++ RPGPI   
Sbjct: 559  EIYQDHRDAVYDMICRADTVGVFQIESRAQMSMLPRLQPREMYDLVIEVAIVRPGPIQGN 618

Query: 659  VVYNNRKNGKEK-----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            +V+   K  + +     +V   P +  +L+ T GV ++QEQ MQIA   +G+S SEAD L
Sbjct: 619  MVHPYLKRREAQRRGEAVVYPSPELKAVLERTLGVPLFQEQAMQIAITAAGFSPSEADRL 678

Query: 714  RRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM    +   +   + + + G   N   +  A   F  +  F +YGF +SHAA++A +
Sbjct: 679  RRAMATFKRTGTIHTFERKMVEGMVANDYEREFAERCFNQIKGFGEYGFPESHAASFASL 738

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y +AW+KT+YP  F AA +  +        +  +DAR+  ++++P  +N    D  +  
Sbjct: 739  VYASAWLKTYYPDIFCAALLNAQPMGFYAPAQLVRDAREHGVRMLPVDINHSDWDALLEG 798

Query: 833  -----------------------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                                     +      +KG+  T  + ++    +  + S+ D  
Sbjct: 799  EGAFDKNAVHPRHASMREVIKTRKAVRLGFRLVKGLKQTDMKALVARRGEG-YRSVHDLW 857

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             R     L+R VLE L  A A    G  R   L ++  + + +             +F  
Sbjct: 858  LR---SGLSRSVLERLADADAFRSIGLDRRAALWAVKALDEQSAVER-------LPLFEG 907

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
                              +  +  ++ R L      HP+   +    + GI    +  AT
Sbjct: 908  AGSDDLQIEPKVALPDMPAGEQVIHDYRTLTLSLKAHPVSFMREDFSRRGILRSRDLAAT 967

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              G  + +A +V+ +Q+  +  G  + ++T  +         +
Sbjct: 968  ATGRWVTVAGLVLVRQRPGSANG--VIFMTIEDETGIANIIVW 1008


>gi|171317636|ref|ZP_02906822.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MEX-5]
 gi|171097213|gb|EDT42062.1| DNA polymerase III, alpha subunit [Burkholderia ambifaria MEX-5]
          Length = 1071

 Score =  562 bits (1448), Expect = e-157,   Method: Composition-based stats.
 Identities = 273/1055 (25%), Positives = 441/1055 (41%), Gaps = 76/1055 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA     ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASHAEELVERAAELGYRGIAITDECSLAGAPRMHVAAKAQGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G   D+   D       G  P P    +VLL    EGY  L EL+S   +    K +
Sbjct: 69   LIVGSFFDVTPDD----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISWRRMAS-PKGT 123

Query: 129  VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             ++    L     E   L  +    +  +        + V + ++  F+  FG R  + L
Sbjct: 124  YKLTSRMLSAPPAEFAHLRGMPDCFAILVPTY--PVRADVLDAQVAWFRATFGARARLGL 181

Query: 187  -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             Q  R  D  +  ++        + +VA  +            DV+ A+     V     
Sbjct: 182  VQLQRPLDGAQREEIRAAGERRGVRIVALGDVTMHRRSCKPLQDVMTAIRVGMPV----- 236

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD---D 302
               +   Y    +    + +    A   + E       IL      L     +  D    
Sbjct: 237  ---SECGYALAPNAEQHLRARGRIAKLFSPEELDETCAILDACDFKLDTLQYEYPDEIVP 293

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                    L  +  AG   R  QG        +    ++  EL++IAR+ +  +FL V D
Sbjct: 294  KGLTPTRHLEQETFAGAAARYPQG------IPEKVETQIRHELDLIARLSYEPFFLTVYD 347

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+  NI    GRGS A SV  Y L IT+++P + ++LFERF++ +R   PD D+DF
Sbjct: 348  IVKYARSQNIL-CQGRGSAANSVVCYCLGITEVNPEQSTMLFERFISEERGEPPDIDVDF 406

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EVI+++  KYGH+R A      + + +  LR+ G+AL +    VDR+ K     
Sbjct: 407  EHQRREEVIQHIYAKYGHDRAALAAAVSTYRPRGVLRETGKALGVDPMLVDRVAKAHRWF 466

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                  LQ  A          A P +    E++ +L    RH S H+ G VI    L++L
Sbjct: 467  DGSRDLLQQFAST----GLDPATPIIRAWAELAGRLLNFPRHLSQHSGGFVISRGKLTRL 522

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------AQRGVKV 596
            VP+         V Q++   +E  GL+K D L L  L+ L ++ D         + G   
Sbjct: 523  VPVENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWRGPQEDGEPF 582

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             L  IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI 
Sbjct: 583  TLKHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLKPRNYYDLVVEVSIVRPGPIQ 642

Query: 657  NIVVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
               V+   K  +        +I      +  +L+ T GV I+QEQVMQIA + +G++  E
Sbjct: 643  GGAVHPYLKRRRIKAGEEEGEITYPSDALRVVLERTLGVPIFQEQVMQIAIVAAGFTPGE 702

Query: 710  ADVLRRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD LRRAM    +        ++ ++G  + G ++  A  IFE +  F +YGF +SHAA+
Sbjct: 703  ADQLRRAMAAWKRRGDLGPYHDKIVNGMLERGYTREFAEQIFEQIKGFGEYGFPESHAAS 762

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            +A ++Y ++W+K H P  FLAA +  +        +  QDA++  +Q++P  V     + 
Sbjct: 763  FAKLAYASSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHGVQVLPIDVTQSNWEA 822

Query: 829  KVG----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
             +              +   L+ ++G+G   AR I  A A  PFD+++    R    +L 
Sbjct: 823  SLEALPDQPPPHGQPAVRLGLSLVRGLGEAAARRIEAARAAAPFDNVDVLARRA---QLE 879

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
            RR LE+L  A AL      R   L             +        ++ A       DK 
Sbjct: 880  RRDLEALAAANALATLAGHRRDALW------------QAVAAAPERDLLAAAPIDEPDK- 926

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
                    + +     +    G   + HP+ + +P LR   +    E      G   R  
Sbjct: 927  --PALGAPSEADDILADYDTTGLTLNRHPVALLRPALRAQRLSSAAELRDRSDGRLARAC 984

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +V ++Q   T KG  + ++T  +          P
Sbjct: 985  GIVTARQMPGTAKG--VMFMTLEDETGCVNVIVRP 1017


>gi|116254421|ref|YP_770259.1| DNA polymerase III alpha subunit [Rhizobium leguminosarum bv. viciae
            3841]
 gi|115259069|emb|CAK10180.1| putative DNA polymerase I alpha subunit [Rhizobium leguminosarum bv.
            viciae 3841]
          Length = 1154

 Score =  562 bits (1448), Expect = e-157,   Method: Composition-based stats.
 Identities = 251/1085 (23%), Positives = 453/1085 (41%), Gaps = 99/1085 (9%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-- 62
            ++  P+F  +   +++S LEGA     ++ + A  +   + I D N++   +    +A  
Sbjct: 1    MKSEPAFFEIGTRTNFSFLEGASGPEEMVVQAAHLRLGGLGIADRNSVAGVVRAHAQAEQ 60

Query: 63   ---------------CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
                              G +     + +I     ++   +        P I+       
Sbjct: 61   LEERYKNRDEIMAQAKKEG-K-----EAEILDPIRIQPGAR-LVFSDGTPDILAYPCNRR 113

Query: 108  GYQRLIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
            G+  L  L++   L ++  K S  +  + L + G E ++ L       +           
Sbjct: 114  GWANLCRLLTAGNLKEEAVKGSCILTEAELMKWGDEMMLAL-------VPDRTLAGHQAG 166

Query: 167  ---AEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
                E  L  F++ F    Y+ L   + G DR   + +  LA  + +PL+ATN  L+   
Sbjct: 167  QSTLEDYLERFRRRFRKAFYMALAPAYDGRDRQVFAVLAMLAARNRVPLIATNQPLYHHP 226

Query: 223  EDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            E     DV++A+     +           + YLK+  EM  IF D P A+ENT     R 
Sbjct: 227  ERRPLSDVVIAIREHVQIAQAGFLLAPNAERYLKDSREMTRIFRDYPNAVENTQVFFDRL 286

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
             F L+              +D  +  +  L     AG   R  +G            Q++
Sbjct: 287  IFSLKELEHNY-----PPENDPGETPQETLERLTRAGAARRYPEG------IPPKVAQQI 335

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            D+EL++I + K++ YFL V   IQ A+     +  GRGS A SV  Y L IT++DP + +
Sbjct: 336  DYELDLIKKKKYASYFLTVHRIIQHARYKLNILCQGRGSAANSVICYCLEITEVDPEKST 395

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLF+RF++ DR   PD D+DF  DRR+EVI+++   Y  E         + + ++A R+V
Sbjct: 396  LLFDRFISMDRDEPPDIDVDFEHDRREEVIQFIYENYKREHAGLTAGVTTYRTRSAGREV 455

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
             +A  +       +  L+       +S      D++     + DP    +L+ + +L G 
Sbjct: 456  SKAFGLSEDVQSAISSLVWGWSEDNLS----ERDAKAAGLDIKDPVTRNVLQYASELLGF 511

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             RH + H  G VI    L ++VP+ +    D  + +++   ++   ++K D L L  LT 
Sbjct: 512  PRHLTQHVGGFVITRDRLDEVVPIMKTAMPDRYMIEWDKDDLDNVKILKVDVLALGMLTC 571

Query: 582  LQKSLDFLAQRGVKVDL------SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            L+K+   L                    +    Y ++    TLG+FQ+ES      L  +
Sbjct: 572  LRKAFSLLELHYDVKKTLADLGNKEHGDEGEPVYEMMGRADTLGVFQIESRAQMSMLPRL 631

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYN-----NRKNGKEKIVSIHPLIDPMLKETQGVII 690
            +P    D++  V++ RPGPI   +V+       ++     I    P +  +LK T GV +
Sbjct: 632  KPKVFYDLVIEVAIVRPGPIQGDMVHPYLKRREQRAKNIPIEYPSPELKDVLKRTLGVPL 691

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNI 749
            +QEQ MQIA   +G+  +EAD LRR+M    +   +D  K+RF+ G  +N  ++  A   
Sbjct: 692  FQEQAMQIAITAAGFKPAEADRLRRSMATFKRTGTIDNFKKRFVDGMIENNYAREFAEQC 751

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            F+ +  F +YGF +SHAA++A++ Y ++W+K +YP  F AA +  +        +  +DA
Sbjct: 752  FKQIKGFGEYGFPESHAASFALLVYASSWLKAYYPDIFCAAMLNSQPMGFYAPAQLVRDA 811

Query: 810  RQFNIQIMPPSVNTPCVDFKVGD----------------------NRIYYSLAAIKGVGT 847
            R+  ++I+P  +N    D  + +                      + +      IKG+ T
Sbjct: 812  REHGVKILPVDINESNWDCDLEEAAFDRNAVDFRHHEMREIIKTRHAVRLGFRQIKGLST 871

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
                 +++   +  + S+ D   R     L + V+E L  A A      SR + L ++  
Sbjct: 872  DDMERLVDNRGEG-YSSVRDLWLR---SGLQKSVIERLADADAFQSLKLSRREALWAVRA 927

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +       +     +   +F   +        + K        +   + R L      HP
Sbjct: 928  L-------DVKSAAEELPLFEQVRHVDLQAEPVAKLPEMLPGEQVIEDYRYLSLSLKAHP 980

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            +   +  LRK G+    + +    G  + +A +V+ +Q+  + KG  + ++T  +     
Sbjct: 981  VSFLREELRKAGVTRSVDLLKVANGQRVTIAGLVLVRQRPGSAKG--VIFMTLEDETGVA 1038

Query: 1028 EANFF 1032
                +
Sbjct: 1039 NVIVW 1043


>gi|331701392|ref|YP_004398351.1| DNA polymerase III subunit alpha [Lactobacillus buchneri NRRL
            B-30929]
 gi|329128735|gb|AEB73288.1| DNA polymerase III, alpha subunit [Lactobacillus buchneri NRRL
            B-30929]
          Length = 1115

 Score =  562 bits (1448), Expect = e-157,   Method: Composition-based stats.
 Identities = 330/1031 (32%), Positives = 537/1031 (52%), Gaps = 49/1031 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+V LQV SSYSLL+  + + +++ +       A+A+TD N ++ A+EF      A I+P
Sbjct: 2    SYVPLQVISSYSLLQSPIRIADLIAEAKDRGYQALALTDLNVMYGAVEFYDACLKAAIKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IG  L +           G          VL+    +GY  L++L +    +       
Sbjct: 62   LIGLTLQL----------PGLILTDKEYGWVLIAKNQQGYANLLKLSTLKMTM------P 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK--LFGDRLYVNLQ 187
             +  S L +  ++ +++L    +  ++       +  A   +   K   +  + L + + 
Sbjct: 106  ELTASQLGDYLSDLVLIL--PPAAEMNDLLLQGRADDAADLIDQVKSLGIDPNALKIGVD 163

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRP 246
             H          + +LA   ++ LVA +   +L+  DY +  VL  +     + +     
Sbjct: 164  YHSS--DSLNDMLSKLAADKQVALVADSPVEYLNATDYFSMQVLKNIGAGEKIANVAQFS 221

Query: 247  RVTPDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            +    ++L+  +++ + +  +   +AL    +I   C+  ++   P LP+F      D  
Sbjct: 222  KQVGPYWLRPATQIEAQYRQVHLADALTQVDQIVADCNVEIKKQQPKLPQFDTPNGIDSG 281

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  LR     GL  RL +  I        Y +RLD EL+VI  M F  YFLIV D I
Sbjct: 282  T----YLRQLCETGLADRLKKNQITDATP---YHRRLDQELSVIHSMGFDNYFLIVWDVI 334

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A + +I  GPGRGS AGS+ AY LTITD+DP+++ LLFERFLNP+R+ MPD D+D   
Sbjct: 335  NFAHQTDIITGPGRGSAAGSLVAYTLTITDVDPIKYDLLFERFLNPERVQMPDIDLDIPD 394

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D+RDEVI+YV  KYGH+RVAQIITFG+L AK ++RDVGR   +  +Q D+  K IPN   
Sbjct: 395  DKRDEVIQYVHQKYGHKRVAQIITFGTLAAKQSIRDVGRVFGLNTAQQDQWSKAIPNAFH 454

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +    +A+  R +      P  + L + +Q LEGL RH STHAAG+V+ D PL  LVP
Sbjct: 455  VTLKDA-LANSQRLKNLVADSPLNEALYQTAQALEGLPRHYSTHAAGLVLSDDPLVNLVP 513

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPF 603
            +       L +TQ++  ++E  GL+K DFLGL+ L++L  +L+ +     KV D+S +P 
Sbjct: 514  LQNG-NEGLLMTQYSKDYVESVGLLKMDFLGLRNLSILGDALEQVQLTTGKVLDISAVPL 572

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +T  L     T GIFQ ES+G+R  L  + P+  EDI  + +LYRPGP+ NI     
Sbjct: 573  DDAKTIQLFADGDTTGIFQFESNGIRNVLRRLHPERFEDIALVNALYRPGPMQNIDEVVK 632

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            RK   E +      +  +L+ T GVI+YQEQVM +A  ++G+SL +AD+LRRAM KK   
Sbjct: 633  RKTNHEALTYPDDSLKDILQPTYGVIVYQEQVMLVASKMAGFSLGQADILRRAMSKKKLG 692

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             M++ K +F++GA + G S ++A  +F+ + +FA+YGFNKSHA AY+ ++Y+ A++K +Y
Sbjct: 693  VMEQMKAQFMTGAKQRGYSDSVANKVFDYIERFANYGFNKSHAVAYSKMAYELAYLKVYY 752

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P EF  A +    +N  K+K++ Q A+   ++++ P++N     F   D +I + L +IK
Sbjct: 753  PGEFHVALLNSVNNNSVKVKEYIQAAKSMGVKVVGPNINHSEARFTFQDQQIVFGLDSIK 812

Query: 844  GVGTT-TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GV        + E   + PF S  DF SR+  K     ++ +L++AGALD F ++R +L+
Sbjct: 813  GVRHDMVVDLLAERQQNGPFKSFPDFLSRLPGKYRKVELINALIYAGALDVFPFNRSELI 872

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             +               +    ++F       + +  + K        + E E   LG Y
Sbjct: 873  AAAPEFISSV-----ELSGNSMSLF------KALEPKMPKMPEMPLMDKLEKENAYLGAY 921

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             SGHP + + P+ +++  +      + ++   I L   +   +  +T+ G ++ ++  ++
Sbjct: 922  LSGHPTERFAPLAQRLNAETTATLSSGMKN--IYLILYITKVKIIRTKTGKQMAFLDGND 979

Query: 1023 PAKEYEANFFP 1033
               +     FP
Sbjct: 980  QVGQTSVTVFP 990


>gi|121583266|ref|YP_973702.1| DNA polymerase III, alpha subunit [Polaromonas naphthalenivorans CJ2]
 gi|120596524|gb|ABM39960.1| DNA polymerase III, alpha subunit [Polaromonas naphthalenivorans CJ2]
          Length = 1041

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 261/1033 (25%), Positives = 447/1033 (43%), Gaps = 71/1033 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L+  S+++ L GA     ++ +       A+A+TD  +L   +     A  AG+  
Sbjct: 15   DYAELRCISNFTFLNGASRPEELVLRARELGYRALALTDECSLAGIVRAHGAAREAGLAL 74

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G Q  +                    ++ +LV    GY  L + ++R+    + K   
Sbjct: 75   LVGAQFLVAD--------------DAPFTLTVLVCNLNGYGNLCQYITRLRRSSE-KGHY 119

Query: 130  RICLSWLQEIGT-EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            R+    +Q     + +++++ G +   ++        +           F  R +  ++ 
Sbjct: 120  RLARDSIQGADLVDCVVLVSPGRTSSAEQLLQLGRWSLL---------HFTGRCWFGVEL 170

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R   D     ++ +++    + LVA  +            DVL A      ++      
Sbjct: 171  LRRLGDAMWLHRMREVSAATAIALVAVGDVCMHVRSRKPLQDVLTATRLGKRLTDCGFEL 230

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +       RS +    +     L  T+++A  C+F L       P+ +        +  
Sbjct: 231  QSNA-ERHLRSRLRLAQTYPAALLAETLKVASHCNFSLDELKYQYPQEVVP----PDETP 285

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     G   R   G  A+       +Q+++ EL +I  +++  YFL V D + +A
Sbjct: 286  AAYLRRMTYEGAGRRWPHGIEAQ------VQQQIEHELALIGELRYEPYFLTVYDIVAFA 339

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  +I    GRGS A SV  Y L +T++DP R S+LFERF++ +R   PD DIDF  +RR
Sbjct: 340  RSRHIL-CQGRGSAANSVVCYCLGVTEVDPARMSVLFERFISRERNEPPDIDIDFEHERR 398

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KYG +R A   T  + + ++A+RDVG+AL    + +D L K         V
Sbjct: 399  EEVIQYLYQKYGRDRAALTATVMTYRPRSAIRDVGKALGFDLATLDLLAKSHQWWDGGQV 458

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              + +            D +V +L+ ++ +L G  RH S H  G V+    LS++VP+  
Sbjct: 459  DAERLTA----LGLFPDDLAVQQLMLLTTQLMGFPRHLSQHTGGFVLTRGLLSRMVPIEN 514

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDH 606
                   V Q++   ++  GL+K D L L  LT L+K+L+F+ A+RG   ++  IP +D 
Sbjct: 515  ASMPGRTVIQWDKDDLDATGLLKVDVLALGMLTALRKALEFVGARRGHSFEMQDIPPEDP 574

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    T+G+FQ+ES   +  L  +QP C  D++  V++ RPGPI   +V+    R
Sbjct: 575  ATYEMMCQADTVGVFQIESRAQQGMLPRLQPRCFYDLVIEVAIVRPGPIQGGMVHPYLAR 634

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IKE 723
            + G+E +      +   L  T GV ++QEQVMQ+A L +G++  EAD LRRAM     K 
Sbjct: 635  RQGREAVSYPSEALREALGRTLGVPVFQEQVMQLAILAAGFTPGEADGLRRAMAAWKRKG 694

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             + +  +R + G +  G  K  AV IFE +  F++YGF +SHAA++A++ Y +AW+K   
Sbjct: 695  GLAQYYDRIVGGMTARGYEKEFAVAIFEQIKGFSEYGFPESHAASFALLVYASAWLKRAE 754

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----NRIYYSL 839
            P  FLAA +  +        +  QDAR+  +++ P  V    +D  + D      +   L
Sbjct: 755  PAAFLAALLNAQPLGFYAPSQLVQDARRHGVEVRPIDVMASDIDATLEDLPQVPAVRLGL 814

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
              + G+G   A  I+ A  D PF+S ED   R D        ++ L  + AL      R 
Sbjct: 815  RLVAGLGRLAAARIVAARMDCPFESAEDLSMRADLAL---HEMKLLAASDALASLSGHRR 871

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            Q +     +      +                        L +            +    
Sbjct: 872  QQVWDASALHAAPALLR----------------AAPVDEELLELPEAPEGEAIGWDYAAT 915

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G     HP+ + +  L K       E      G  +R   MV  +QQ     G+   +V+
Sbjct: 916  GLTLRRHPMALLRARLVKHRFLSSGELREHPDGQMVRTCGMVTLRQQPPAANGT--VFVS 973

Query: 1020 FSEPAKEYEANFF 1032
              +     +   F
Sbjct: 974  LEDEDGAIQVIVF 986


>gi|167909389|ref|ZP_02496480.1| error-prone DNA polymerase [Burkholderia pseudomallei 112]
 gi|254196425|ref|ZP_04902849.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei S13]
 gi|169653168|gb|EDS85861.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei S13]
          Length = 1072

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 277/1053 (26%), Positives = 441/1053 (41%), Gaps = 71/1053 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129  VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L         L  +    +  +        + V + +L  F  LFG+R  + L
Sbjct: 124  YRLTPRMLAAPPRALAHLRGVPDCFAILVPTY--PARADVLDAQLAWFDALFGERARLGL 181

Query: 187  -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             Q  R  D     QV        + +VA  +            D + A+        +  
Sbjct: 182  VQLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMP-IAECG 240

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     R+          +AL  T  +   C F L       P  I         
Sbjct: 241  HALAPNGEQHLRTRQRIAQLFPADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----H 296

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D ++
Sbjct: 297  TPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVK 350

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I    GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   
Sbjct: 351  YARNKDIL-CQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQ 409

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K        
Sbjct: 410  RREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGS 469

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               L   A            P +    EI+ +L    RH S H+ G V+    L++LVP+
Sbjct: 470  RDLLARFASV----GLDPEVPLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPV 525

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDL 598
                     V Q++   +E  GL+K D L L  L+ L ++ D +               L
Sbjct: 526  ENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRL 585

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI   
Sbjct: 586  EHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGG 645

Query: 659  VVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
             V+   +  +        +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD
Sbjct: 646  AVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEAD 705

Query: 712  VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRRAM     K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A
Sbjct: 706  ALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  +
Sbjct: 766  KLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASL 825

Query: 831  G----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                          +   L+ ++G+G   AR I  A A  PF S+++   R     L RR
Sbjct: 826  EAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRA---CLERR 882

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             LE+L  A A      +R   L             +         + A      + +   
Sbjct: 883  DLEALAAANAFATLAGNRRDALW------------QAVAAAPERGLLAAAPIDEAVR--- 927

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                    +     + R +G   + HP+ + +P L    +           G   R   +
Sbjct: 928  PALGAPTEADDVFADYRTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGRLARACGL 987

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V ++Q   T KG  + +VT  +          P
Sbjct: 988  VTARQMPGTAKG--VLFVTLEDETGCVNVIVRP 1018


>gi|329895034|ref|ZP_08270799.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC3088]
 gi|328922530|gb|EGG29867.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC3088]
          Length = 1094

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 264/1037 (25%), Positives = 444/1037 (42%), Gaps = 78/1037 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S+YS L GA   + ++ + A     AIAITD  +L   ++   +A  + I+ I
Sbjct: 68   YCELVCTSNYSFLRGASHPDELVARAAELGYGAIAITDECSLAGVVKAHVQAEISDIKLI 127

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +                        +V L      Y  L  L+SR       K    
Sbjct: 128  VGSEF----------------LTVEGVRLVALAPNRNAYSELSGLISRARRRAN-KGQYE 170

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L  L       LI+        +      +          T  K F  RL++  +   
Sbjct: 171  VHLPDLIFHLKHCLII-------WLPEQLNRSHV----AFGHTLSKRFKTRLWLGFKHLL 219

Query: 191  GYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQKDRPRV 248
              + R +      L+    +P+VA  +    S +    HD L A+ H T +         
Sbjct: 220  AGETRQQFQTFEALSQELNIPMVACGDVRMHSPKRKALHDALTALYHRTQIDRLGTLRLG 279

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                +L+    + +++ D  E ++ +  IA +C F L+      P+ I        +   
Sbjct: 280  NSQQHLRPLELIKALYPD--ELIQQSQTIADQCQFSLRELRYEYPQEIVP----TDQTAS 333

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR +   G   R   G           ++R++ EL +IA++++  YFL V D + +AK
Sbjct: 334  EYLRQEVKQGCRQRWPNG------TPDAIQKRIEKELELIAQLRYEHYFLTVYDIVNFAK 387

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I    GRGS A SV  Y L IT++ P    LLFERF++ +R   PD D+DF  +RR+
Sbjct: 388  SRRIL-CQGRGSAANSVVCYCLGITEVSPEHIDLLFERFISQERDEPPDIDVDFEHERRE 446

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  KY   R A   T  + + ++A+RD+GRA+    S +++L + I         
Sbjct: 447  EVIQYIYQKYSRRRAALAATVITYRTRSAIRDIGRAMGFDASFIEQLSQSIAWWDRRAEL 506

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             Q   +    +  + ++        +  ++ G  RH S H  G VI   P+SQLVP+   
Sbjct: 507  QQRFNE----QGIKHSEQQAMHFQHLVSQILGFPRHLSQHVGGFVISAGPISQLVPVENA 562

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHE 607
               D  V Q++   IE  GL+K D L L  L+ ++KSLD +A     +  L  IP +D  
Sbjct: 563  SMPDRTVIQWDKDDIEALGLLKVDVLALGMLSAIRKSLDLIANYQPTIAHLREIPKEDAS 622

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRK 665
            TY +L T  +LG+FQ+ES      L  ++P C  D++  +++ RPGPI    +  Y  R+
Sbjct: 623  TYRMLQTGDSLGVFQIESRAQMAMLPRLKPACFYDLVIEIAIVRPGPIQGEMVHPYLRRR 682

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G E +   +  I  +L+ T GV I+QEQV+++A + +G+S  EAD LRRA+    K   
Sbjct: 683  EGLEPVSFPNDAIKGVLQRTLGVPIFQEQVIRLAMVAAGFSGGEADQLRRAITNWGKNSK 742

Query: 726  -DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
                + + I G   NG  +  A  +F+ +  F  YGF +SH+A++A+++Y +AW+K H+P
Sbjct: 743  LLTFEHKLIQGMLANGYDEAFANRLFDQIKGFGGYGFPESHSASFALLAYASAWLKRHHP 802

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-------DNRIYY 837
              F    +  +        +  QDA++  I I P  +N    D ++         N I  
Sbjct: 803  GAFYVGILNSQPMGFYSPSQLIQDAQRHGIHIEPLDINQSLWDHQLVATDYRQQPNTIRL 862

Query: 838  SLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L  +KG+   TA  I++      PF +L +   R     +    L++L  A AL     
Sbjct: 863  GLRLVKGLSEATATRIVDSRRQHGPFKALNELRQRA---AIPANELQALSSADALSTISG 919

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R Q    +  + ++              + A      + +         + +     + 
Sbjct: 920  HRHQTQWQVLGLPEH------------RPLLARLDNAENYQS--PNIEPPSVAENVLADY 965

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            +  G     HPL + +          + E +A      +R+A +V  KQ+  T  G  + 
Sbjct: 966  QSTGLTLRDHPLSLLRKEWPFKRCSTHRELLAASSQRFVRIAGLVTCKQRPGTASG--VI 1023

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++T  +    +    +P
Sbjct: 1024 FLTLEDETGNHNVVVWP 1040


>gi|53718111|ref|YP_107097.1| error-prone DNA polymerase [Burkholderia pseudomallei K96243]
 gi|126440547|ref|YP_001057563.1| error-prone DNA polymerase [Burkholderia pseudomallei 668]
 gi|217420209|ref|ZP_03451715.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 576]
 gi|71151821|sp|Q63XR8|DNAE2_BURPS RecName: Full=Error-prone DNA polymerase
 gi|52208525|emb|CAH34461.1| putative DNA polymerase III alpha subunit [Burkholderia pseudomallei
            K96243]
 gi|126220040|gb|ABN83546.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 668]
 gi|217397513|gb|EEC37529.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 576]
          Length = 1072

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 277/1053 (26%), Positives = 441/1053 (41%), Gaps = 71/1053 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129  VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L         L  +    +  +        + V + +L  F  LFG+R  + L
Sbjct: 124  YRLTPRMLAAPPRALAHLRGVPDCFAILVPTY--PARADVLDAQLAWFDALFGERARLGL 181

Query: 187  -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             Q  R  D     QV        + +VA  +            D + A+        +  
Sbjct: 182  VQLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMP-IAECG 240

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     R+          +AL  T  +   C F L       P  I         
Sbjct: 241  HALAPNGEQHLRTRQRIAQLFPADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----H 296

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D ++
Sbjct: 297  TPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVK 350

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I    GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   
Sbjct: 351  YARSKDIL-CQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQ 409

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K        
Sbjct: 410  RREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGS 469

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               L   A            P +    EI+ +L    RH S H+ G V+    L++LVP+
Sbjct: 470  RDLLARFASV----GLDPEVPLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPV 525

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDL 598
                     V Q++   +E  GL+K D L L  L+ L ++ D +               L
Sbjct: 526  ENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRL 585

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI   
Sbjct: 586  EHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGG 645

Query: 659  VVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
             V+   +  +        +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD
Sbjct: 646  AVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEAD 705

Query: 712  VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRRAM     K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A
Sbjct: 706  ALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  +
Sbjct: 766  KLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASL 825

Query: 831  G----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                          +   L+ ++G+G   AR I  A A  PF S+++   R     L RR
Sbjct: 826  EAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRA---CLERR 882

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             LE+L  A A      +R   L             +         + A      + +   
Sbjct: 883  DLEALAAANAFATLAGNRRDALW------------QAVAAAPERGLLAAAPIDEAVR--- 927

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                    +     + R +G   + HP+ + +P L    +           G   R   +
Sbjct: 928  PALGAPTEADDVFADYRTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGRLARACGL 987

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V ++Q   T KG  + +VT  +          P
Sbjct: 988  VTARQMPGTAKG--VLFVTLEDETGCVNVIVRP 1018


>gi|126668604|ref|ZP_01739557.1| DNA polymerase III, alpha subunit, putative [Marinobacter sp. ELB17]
 gi|126626934|gb|EAZ97578.1| DNA polymerase III, alpha subunit, putative [Marinobacter sp. ELB17]
          Length = 1068

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 247/1052 (23%), Positives = 427/1052 (40%), Gaps = 76/1052 (7%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E   S+  L   S++S L GA   + + ++ A     A+AITD  ++            +
Sbjct: 13   ENPESYAELHCFSNFSFLTGASHPHELAEQAAGLGYSALAITDACSVAGIPRAWAALKNS 72

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
             ++ I G   ++              P    P  +LL  T +GY +L +L++      + 
Sbjct: 73   PVKLITGSWFELS----------DAPPRACTPCFILLARTRKGYGQLCQLITSARRRAE- 121

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            K   ++    L+    +  + L       +        SQ A        +LF  RL++ 
Sbjct: 122  KGQYQLYYRDLEVHPLDDCLCL------WLPPTLANADSQQALAAGEWLLRLFDRRLWLA 175

Query: 186  LQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
              R     +  + +++  LA     P+ A+ +      +     DVL A+ + T +    
Sbjct: 176  ASRTLESGEEQQLARIRWLATELRCPITASGDVHMHCRKRQPLQDVLTALRNHTNLENAG 235

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                           ++          +  V   +            L      +     
Sbjct: 236  HCLFQNGERYLRPVAVLQRLFPTAWLQQTQVIAQQCT-----FEPGSLRYEYPPDLVPSG 290

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  L      G   R  +G           +  +  EL +I+ M++  YFL + D +
Sbjct: 291  TCAAGYLLKLTREGERRRYPEG------TPLQVQALIHKELGLISEMQYEHYFLTIEDIV 344

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+   I    GRGS A S   Y L IT+++P +  LLFERF++ DR   PD D+DF  
Sbjct: 345  AFARGRGIL-CQGRGSAANSAVCYCLGITEVNPAKVDLLFERFISKDRNEPPDIDVDFEH 403

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR+EVI+Y+  +Y  +R A   T    + ++ +RDVG+ L      V++L   I     
Sbjct: 404  QRREEVIQYIYQRYSRDRAAIAATVIRYRPRSTIRDVGKVLGFDPLLVEQLLDGIDWRDK 463

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                 Q I D    +         D+   +   L G  RH S H  G VI   PL++LVP
Sbjct: 464  ATPWRQQILD----KNLTRNPNVADQFFTLVNTLLGFPRHLSQHVGGFVISAGPLAELVP 519

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPF 603
            +     +D  V Q++   +E  GL+K D L L  LT ++K+L+ + AQ G    +  IP 
Sbjct: 520  IENAAMADRTVIQWDKNDLESLGLMKVDVLALGILTAIRKALEMISAQLGRPFHMQDIPQ 579

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662
            +D +TY +L T  ++G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+  
Sbjct: 580  EDPDTYAMLQTGDSVGVFQVESRAQINMLPRLKPATYYDLVVQVAIVRPGPIQGDMVHPY 639

Query: 663  -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R++G E +   +  I  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM    
Sbjct: 640  LKRRHGLEPVNYPNQAIQRVLERTLGVPIFQEQVIRLAMVAAGFSGGEADQLRRAMAAWK 699

Query: 722  -KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
               ++   +++ +SG  + G +   A  +++ +  F  YGF +SHAA++A++ Y +AW+K
Sbjct: 700  SHGDLTPFRDKLLSGMKERGHTDDFAERLYQQICGFGGYGFPESHAASFALLVYVSAWIK 759

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR------ 834
             HYP  F  A +  +        +  QDAR+  + + P  VN    D  +          
Sbjct: 760  RHYPAAFYCALLNSQPMGFYSASQLVQDARRHGVDVQPLDVNHSQWDHTLQSQTPQSQAP 819

Query: 835  --------------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                          +   L+ I+G+       +     +  + S            LN+R
Sbjct: 820  QSQTLQTQTDNPLSLRLGLSQIRGLSQQAGTSVSAKRPENGYTSSSQLRQ---LTGLNQR 876

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             +E L  A A+  F  +R Q    L   ++ A+            +F  E    + +   
Sbjct: 877  DMELLAGANAMPGFTSNRHQAYWQLLGHEQPAE------------LFIGEDNN-APEPAC 923

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
            E+    N       +    G     HPL + +            E      G  +++A +
Sbjct: 924  EQLPTPNEGQNIAADYSSQGLTLQRHPLALLREQGHLSFCLSASELNTIEPGRPVQVAGL 983

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V  +Q+  T  G  + +VT  +         +
Sbjct: 984  VTGRQRPGTASG--VTFVTLEDETGNINVVVW 1013


>gi|167917420|ref|ZP_02504511.1| error-prone DNA polymerase [Burkholderia pseudomallei BCC215]
          Length = 1072

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 277/1053 (26%), Positives = 441/1053 (41%), Gaps = 71/1053 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129  VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L         L  +    +  +        + V + +L  F  LFG+R  + L
Sbjct: 124  YRLTPRMLAAPPRALAHLRGVPDCFAILVPTY--PARADVLDAQLAWFDALFGERARLGL 181

Query: 187  -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             Q  R  D     QV        + +VA  +            D + A+        +  
Sbjct: 182  VQLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMP-IAECG 240

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     R+          +AL  T  +   C F L       P  I         
Sbjct: 241  HALAPNGEQHLRTRQRIAQLFPADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----H 296

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D ++
Sbjct: 297  TPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVK 350

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I    GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   
Sbjct: 351  YARSKDIL-CQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQ 409

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K        
Sbjct: 410  RREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGS 469

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               L   A            P +    EI+ +L    RH S H+ G V+    L++LVP+
Sbjct: 470  RDLLARFASV----GLDPEVPLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPV 525

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDL 598
                     V Q++   +E  GL+K D L L  L+ L ++ D +               L
Sbjct: 526  ENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRL 585

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI   
Sbjct: 586  EHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGG 645

Query: 659  VVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
             V+   +  +        +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD
Sbjct: 646  AVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEAD 705

Query: 712  VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRRAM     K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A
Sbjct: 706  ALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  +
Sbjct: 766  KLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASL 825

Query: 831  G----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                          +   L+ ++G+G   AR I  A A  PF S+++   R     L RR
Sbjct: 826  EAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRA---CLERR 882

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             LE+L  A A      +R   L             +         + A      + +   
Sbjct: 883  DLEALAAANAFATLAGNRRDALW------------QAVAAAPERGLLAAAPIDEAVR--- 927

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                    +     + R +G   + HP+ + +P L    +           G   R   +
Sbjct: 928  PALGAPTEADDVFADYRTIGLTLNRHPVALLRPALDARRLSSAAALRERRNGRLARACGL 987

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V ++Q   T KG  + +VT  +          P
Sbjct: 988  VTARQMPGTAKG--VLFVTLEDETGCVNVIVRP 1018


>gi|32471325|ref|NP_864318.1| DNA polymerase III alpha subunit [Rhodopirellula baltica SH 1]
 gi|71151837|sp|Q7UXK9|DNAE2_RHOBA RecName: Full=Error-prone DNA polymerase
 gi|32443166|emb|CAD71997.1| DNA polymerase III alpha subunit [Rhodopirellula baltica SH 1]
          Length = 1145

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 268/1039 (25%), Positives = 472/1039 (45%), Gaps = 68/1039 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +V L   S++S L+GA   + ++ + A      +AITD  ++   +     A   G+Q 
Sbjct: 104  RYVELHCRSNFSFLDGASHPDELVQRAAELGYEGLAITDRESIAGVVRGFSPAQELGLQY 163

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G ++                     P +VL  +    Y R+  ++S   +  + K   
Sbjct: 164  IVGTEV----------------HPTDAPPMVLWPTDRAAYGRMCRMLSTGRMRCE-KGRC 206

Query: 130  RICLSWLQEIGTE---GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             +    + E       G+I      S     A   +S Q        F+ +F DR Y+  
Sbjct: 207  ELSFEDIAEHAQGILAGVIATDESRSIEDQHAHVNDSRQFLR---GPFRDVFDDRGYLLA 263

Query: 187  QRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              HRG  D  + + +  L+   ++PL+A  +  + S E    HD ++A++    V Q   
Sbjct: 264  SFHRGVDDAAKATWLRNLSLATDVPLLACGDVRYHSAERMALHDCVVAISQGKSVEQIQS 323

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             R V   H+L++  E+  ++ D+P+A+  T+E+A+RC+F L       P  +  E     
Sbjct: 324  DRLVNSQHHLRSLEEIAELYRDVPDAVARTIEVAQRCTFTLDQLKYEYPVELAPEGM--- 380

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  L+     G   R   G        +   + L  E+ +I  +++  YFL V D +
Sbjct: 381  -TPIEHLKRLTWEGARGRWPNGV------PEKVIETLRHEVTLIEDLQYEAYFLTVWDLV 433

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A+   I    GRGS A SV  Y L IT +DP    LLFERF++ +R   PD D+DF  
Sbjct: 434  RFARSQEIL-CQGRGSAANSVVCYCLGITSVDPTHTDLLFERFISRERGEAPDIDVDFEH 492

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR+EV++Y+  KYG +R          +AK+A+R+VG+AL +    +D + KL  +   
Sbjct: 493  QRREEVLQYLYEKYGRDRAGMTAVVTCYRAKSAIREVGKALAISPDIIDAVAKLAGSYSR 552

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
            +P   +   D           P   R L +++ L G  RH S H  G+V+    L +L  
Sbjct: 553  NPELPERCRD----AGLDPDTPLGRRFLYLTETLIGFPRHLSQHVGGMVMTAGSLCELCV 608

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPF 603
                      V Q+N   ++  G++K D L L  L+ +++  + +     +   LS IP 
Sbjct: 609  TENAAMPGRSVIQWNKDDLDDIGILKVDILALGMLSAIRRCFELVKDHHNRELSLSTIPP 668

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  TY ++    T+G+FQ+ES      L  ++P C  D++  V++ RPGPI   +V+  
Sbjct: 669  DDTPTYDMICAADTMGVFQIESRAQMSMLPRLKPRCYYDLVIEVAIVRPGPIQGNMVHPF 728

Query: 664  --RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
               +         +  I  +L++T GV I+QEQ M++A + +G++  EAD LRRAM    
Sbjct: 729  LAARENPAAAKYPNDAIRKVLEKTLGVPIFQEQAMKLAVVAAGFTPGEADQLRRAMAAWR 788

Query: 722  KE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            +   +D+ + + + G   NG++   A N+F  +  F +YGF +SHAA++A++ Y + ++K
Sbjct: 789  RPGVIDRFRTKLLEGMKANGLNGEFAENVFRQIRGFGEYGFPESHAASFALLVYASCYLK 848

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------R 834
             HYP  F AA +  +        +  +DA+Q  +Q++P  +N   +  K+  +      +
Sbjct: 849  RHYPTAFCAALLDSQPMGFYAPAQLIRDAQQHGVQVLPVDINDSNIRSKLIPDLNRPHPK 908

Query: 835  IYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            +   L  ++G+ +  A+ I+ A  A+ PF +L D  +R    KL+R  + +L  A AL  
Sbjct: 909  LRLGLQMVRGLPSAVAQKIIVARDANGPFANLHDLTTRA---KLSRSNIATLADADALAS 965

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                R   +          Q + ++ +     + A  +    D    E+    + +   +
Sbjct: 966  IAQDRRAAVW---------QSLAQDDSGDSMPLLADLEP---DCSVPEELVPMSPAEEVK 1013

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            N+    G     HP+  ++  L  +  K   +      G ++R+A +V+ +Q+  T KG 
Sbjct: 1014 NDYATTGLSLKAHPVSFWRDDLNALRCKRASDLPKLRDGVHVRVAGLVLMRQRPGTAKG- 1072

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             I +VT  +         F
Sbjct: 1073 -ITFVTMEDETGSMNLVLF 1090


>gi|187926662|ref|YP_001893007.1| DNA polymerase III, alpha subunit [Ralstonia pickettii 12J]
 gi|241666174|ref|YP_002984533.1| error-prone DNA polymerase [Ralstonia pickettii 12D]
 gi|254777926|sp|B2UJ29|DNAE2_RALPJ RecName: Full=Error-prone DNA polymerase
 gi|187728416|gb|ACD29580.1| DNA polymerase III, alpha subunit [Ralstonia pickettii 12J]
 gi|240868201|gb|ACS65861.1| DNA polymerase III, alpha subunit [Ralstonia pickettii 12D]
          Length = 1079

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 258/1074 (24%), Positives = 433/1074 (40%), Gaps = 94/1074 (8%)

Query: 5    LEKS------PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
            +  +      P +  L   S+++ L GA   + ++++       A+A+TD  ++      
Sbjct: 1    MTSATPLPVLPDYAELHCISNFTFLTGASHPSELVERAKLYGYQALALTDECSVAGTARA 60

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
               +    ++ IIG +  +   D                 +VLL    EGY  L E+++ 
Sbjct: 61   LVASKEHELKLIIGSRFTVRNADGEPWL-----------RLVLLAQNIEGYGNLSEIITH 109

Query: 119  MYLLDQGKQSVRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
              L    K   R+    L     E   L       +  +         Q    +    ++
Sbjct: 110  ARLA-APKGEYRLLADDLASPQGELAHLRGAPDCLAILLPDY--DPDPQQLLAQAWWCQR 166

Query: 177  LFGDRLYVNLQ---RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +FGDRL + L+   RH   D      V+ ++   ++P+VAT      + +    HDVL A
Sbjct: 167  VFGDRLSIALELPLRH--ADDRHRGTVLAVSEQIDVPMVATGGVQMHTRQRKPLHDVLTA 224

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD---LPEALENTVEIARRCSFILQVHAP 290
            +  S  +S+                  ++         + L  TVE+A  C+F L     
Sbjct: 225  IRLSKPLSECGLELAPSAEQAMRTRMQLAFLYQGEGGEKILRRTVELAALCNFSLDEIEY 284

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
              P  +  E           LR +  AG   R   G       ++    +++ EL +IA 
Sbjct: 285  EYPSEVVPEGM----TPAEYLRAETFAGAARRYPNGV------SEKVHAQIEEELGLIAE 334

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            + +  +FL V D +++A+   I    GRGS A S   Y L IT+++P   + LF RFL+ 
Sbjct: 335  LGYEPFFLTVYDVVKFARNEGIL-CQGRGSAANSAVCYCLGITEVNPDSGNTLFARFLSR 393

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
             R   PD D+DF   RR+EVI+Y+  KYG  R A      + + ++ALRDVGRAL +   
Sbjct: 394  ARNEPPDIDVDFEHQRREEVIQYIYKKYGVTRTALAAALITYRTRSALRDVGRALGIDLG 453

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
             V+++ K      +        A  +  +      P V R  ++  +L G  RH S H  
Sbjct: 454  IVEQVAKGQAWWDSRK----EFAQRAGQQGLDPESPLVLRWAQLVDQLRGFPRHLSQHVG 509

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-- 588
            G VI    LS+LVP+      +  V Q++   +E   L+K D L L  LT ++++LD   
Sbjct: 510  GFVIAQGKLSRLVPIENAAMENRRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDMVD 569

Query: 589  -----LAQRGVKVDLSLIPFDDHE--TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
                     G    L++    D +  TY ++    T+G+FQ+ES   +  L  ++P    
Sbjct: 570  ALPGRREHYGATAKLAMQNLPDDDTETYDMICRAETIGVFQIESRAQQSMLPRLRPREYY 629

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEK-------IVSIHPLIDPMLKETQGVIIYQEQ 694
            D++  V++ RPGPI   +V+   +  + K       +    P +  +L+ T GV I+QEQ
Sbjct: 630  DLVIQVAIVRPGPIQGGMVHPYLQRREAKRNGNTDCVTYPGPEVKAVLERTLGVPIFQEQ 689

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA--SKNGISKTIAVNIFEL 752
            VM+IA     ++  +AD LRR M    ++    Q +  +  A   K          + + 
Sbjct: 690  VMEIAMKAGDFTADDADRLRRDMAAWKRKGNLTQHQERLVHAMVVKRRYDPAFVEALCKQ 749

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  FA+YGF +SHAA +A ++Y ++++K H P  F AA +  +        +  Q+AR+ 
Sbjct: 750  MEGFAEYGFPESHAAGFAKLAYVSSFLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRS 809

Query: 813  NIQIMPPSVNTPCVDFKV---------GDN----RIYYSLAAIKGVGTTTARHIMEASAD 859
            +++++P  V     D  +          D      I   L  I+G+    A  I  A A 
Sbjct: 810  HVRVLPADVTASVWDSTLHPRADGETGEDGLVQPDIRLGLNRIRGMRKPAAERIEAARAQ 869

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             PF S+ED   R     L+R  L  L  A AL      R Q L     +Q+        R
Sbjct: 870  APFTSVEDLAHRA---ALDRHDLNVLAAANALKSLAGHRRQALWQTLALQEPGHDHALLR 926

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
              +                   +            +   LG     HP+++ +  L +M 
Sbjct: 927  QAR-------------PVEAPLELPAPPIGEEVMADYGSLGLSLQSHPVELLRARLERMR 973

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                        G   R   +V  +Q+  T  G+   +V+  +         +P
Sbjct: 974  FATAATLAGYRNGQLARACGIVTVRQRPGTANGT--IFVSIEDETGAINVILWP 1025


>gi|76580102|gb|ABA49577.1| DNA polymerase III, alpha subunit, form 2 [Burkholderia pseudomallei
            1710b]
          Length = 1084

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 277/1053 (26%), Positives = 441/1053 (41%), Gaps = 71/1053 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 21   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 80

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 81   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 135

Query: 129  VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L         L  +    +  +        + V + +L  F  LFG+R  + L
Sbjct: 136  YRLTPRMLAAPPRALAHLRGVPDCFAILVPTY--PARADVLDAQLAWFDALFGERARLGL 193

Query: 187  -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             Q  R  D     QV        + +VA  +            D + A+        +  
Sbjct: 194  VQLQRALDGAHREQVRAAGERRGMHIVALGDVAMHIRSCKPLQDTMTAIRLGMP-IAECG 252

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     R+          +AL  T  +   C F L       P  I         
Sbjct: 253  HALAPNGEQHLRTRQRIAQLFPADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----H 308

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D ++
Sbjct: 309  TPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVK 362

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I    GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   
Sbjct: 363  YARSKDIL-CQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQ 421

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K        
Sbjct: 422  RREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGS 481

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               L   A            P +    EI+ +L    RH S H+ G V+    L++LVP+
Sbjct: 482  RDLLARFASV----GLDPEVPLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPV 537

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDL 598
                     V Q++   +E  GL+K D L L  L+ L ++ D +               L
Sbjct: 538  ENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRL 597

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI   
Sbjct: 598  EHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGG 657

Query: 659  VVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
             V+   +  +        +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD
Sbjct: 658  AVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEAD 717

Query: 712  VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRRAM     K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A
Sbjct: 718  ALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFA 777

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  +
Sbjct: 778  KLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASL 837

Query: 831  G----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                          +   L+ ++G+G   AR I  A A  PF S+++   R     L RR
Sbjct: 838  EAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRA---CLERR 894

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             LE+L  A A      +R   L             +         + A      + +   
Sbjct: 895  DLEALAAANAFATLAGNRRDALW------------QAVAAAPERGLLAVAPIDEAVR--- 939

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                    +     + R +G   + HP+ + +P L    +           G   R   +
Sbjct: 940  PALGAPTEADDVFADYRTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGRLARACGL 999

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V ++Q   T KG  + +VT  +          P
Sbjct: 1000 VTARQMPGTAKG--VLFVTLEDETGCVNVIVRP 1030


>gi|134279926|ref|ZP_01766638.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 305]
 gi|134249126|gb|EBA49208.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 305]
          Length = 1072

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 277/1053 (26%), Positives = 441/1053 (41%), Gaps = 71/1053 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129  VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L         L  +    +  +        + V + +L  F  LFG+R  + L
Sbjct: 124  YRLTPRMLAAPPRALAHLRGVPDCFAILVPTY--PARADVLDAQLAWFDALFGERARLGL 181

Query: 187  -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             Q  R  D     QV        + +VA  +            D + A+        +  
Sbjct: 182  VQLQRALDGAHREQVRAAGERRGMHIVALGDVAMHIRSCKPLQDTMTAIRLGMP-IAECG 240

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     R+          +AL  T  +   C F L       P  I         
Sbjct: 241  HALAPNGEQHLRTRQRIAQLFPADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----H 296

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D ++
Sbjct: 297  TPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVK 350

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I    GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   
Sbjct: 351  YARSKDIL-CQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQ 409

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K        
Sbjct: 410  RREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGS 469

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               L   A            P +    EI+ +L    RH S H+ G V+    L++LVP+
Sbjct: 470  RDLLARFASV----GLDPEVPLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPV 525

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDL 598
                     V Q++   +E  GL+K D L L  L+ L ++ D +               L
Sbjct: 526  ENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRL 585

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI   
Sbjct: 586  EHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGG 645

Query: 659  VVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
             V+   +  +        +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD
Sbjct: 646  AVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEAD 705

Query: 712  VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRRAM     K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A
Sbjct: 706  ALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  +
Sbjct: 766  KLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASL 825

Query: 831  G----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                          +   L+ ++G+G   AR I  A A  PF S+++   R     L RR
Sbjct: 826  EAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRA---CLERR 882

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             LE+L  A A      +R   L             +         + A      + +   
Sbjct: 883  DLEALAAANAFATLAGNRRDALW------------QAVAAAPERGLLAAAPIDEAVR--- 927

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                    +     + R +G   + HP+ + +P L    +           G   R   +
Sbjct: 928  PALGAPTEADDVFADYRTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGRLARACGL 987

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V ++Q   T KG  + +VT  +          P
Sbjct: 988  VTARQMPGTAKG--VLFVTLEDETGCVNVIVRP 1018


>gi|224541515|ref|ZP_03682054.1| hypothetical protein CATMIT_00685 [Catenibacterium mitsuokai DSM
            15897]
 gi|224525552|gb|EEF94657.1| hypothetical protein CATMIT_00685 [Catenibacterium mitsuokai DSM
            15897]
          Length = 1030

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 346/1034 (33%), Positives = 553/1034 (53%), Gaps = 65/1034 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HLQ+ S+YS  E  L +N ++D   +    A+A+TD NN++ A EF +    A I+PI
Sbjct: 11   FGHLQIKSAYSFQESTLLINALIDNAKSKHIQALALTDDNNMYGAYEFYEACKKASIKPI 70

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G    I   D+L               + L      GY+ L+ +VS + L +       
Sbjct: 71   LGVNASIMFNDDLI-------------HLALYARDDVGYKDLVRIVSDINLNENK----A 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR---------LLTFKKLFGDR 181
            I L  L     + L +++      +      +   +             + T KKLFG  
Sbjct: 114  ITLKALSNY-RDHLYVVSHEYEDRLIEKEATSKEDLLTHAQIESPVLSFMKTMKKLFGAS 172

Query: 182  LYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
              + +          R   +++ A   ++P +  N+  +L   D    D+L A     V+
Sbjct: 173  YRIMIVEDGLKGHTLRNQTLIKYAQFLDIPCIWGNDVRYLHPHDAFTLDLLQASKKGEVL 232

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            S+   P  +  + LK   E+  +FS  P+ ++NT E+   C   +Q     LPR+     
Sbjct: 233  SKDYEPLTSERY-LKTEKEIRELFSRYPDIIKNTEEMIDNCYGSIQKTKNGLPRYQTPHG 291

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D         LR+  + GL+ R     I       DY+ RL +EL  I  M +  YFLIV
Sbjct: 292  DSG-----AYLRHLCIKGLKQRFKNQTI-----TDDYKDRLLYELKTIHTMGYDDYFLIV 341

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D++Q+AKK+ I VGPGRGS AGS+ AY L IT+IDPL++ LLFERFLNP+R+SMPD D+
Sbjct: 342  FDYVQYAKKHGILVGPGRGSAAGSLVAYCLGITNIDPLKYDLLFERFLNPERVSMPDIDV 401

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  DRRDEVI+YV NKYGH+ VAQI+ F +   + A++D+G+ + +P  +++ + K++P
Sbjct: 402  DFQDDRRDEVIQYVCNKYGHDHVAQIVAFSTYGPRVAIKDLGKVMGIPLPRLEMIAKMVP 461

Query: 481  NDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
              P H  S+    +  + F++    DP + RL+     +E L R+ + HAAG+V+   PL
Sbjct: 462  TAPKHRKSITEVYSTSASFQDMIQKDPVLSRLIAPMSLVEYLPRNITMHAAGVVLSYEPL 521

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDL 598
              +VP+     SD+ ++Q++  +IEK GL+K DFLGLK LT++   +  + +R G    +
Sbjct: 522  RDVVPLVIGP-SDMIMSQYSKDYIEKTGLLKMDFLGLKNLTMIDYIMKDIERRLGQTFSI 580

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + IP +D  TYHL+    T G+FQLES+GMR  L  M+PD  +DI+A V+LYRPGP++NI
Sbjct: 581  NSIPLNDARTYHLIARGDTTGVFQLESNGMRSLLMKMKPDHFDDIVAAVALYRPGPMENI 640

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             +Y   +  K  I  +   ++P+LK T G++IYQEQ+MQIAQ+++G+SL  AD+LR+A+ 
Sbjct: 641  PLYLEGRKNKNNITYLVKELEPILKSTYGIMIYQEQIMQIAQVIAGFSLGRADILRKAVS 700

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK +  M   KE F+ GA K G  + IA+ +++++ KFA+YGFNKSH+ AY  ++YQ A+
Sbjct: 701  KKDESMMASMKEEFLQGAIKKGFDEKIALKLYQMIEKFANYGFNKSHSVAYGYMAYQLAY 760

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K +YP+ F AA ++ E  +     +  ++++++ ++I+PPS+N     F V +  I YS
Sbjct: 761  LKANYPLYFFAAILSNESGSASSKMRIIEESKRYGVKILPPSINYSYSRFVVEEGGIRYS 820

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L +IK VG    + I++      F  + DF +R+ S  L+ ++LESL+ AGA D F  +R
Sbjct: 821  LVSIKNVGAAGYKMILKEREKGLFKDMYDFLARIPS--LSSKMLESLIDAGAFDEFNKNR 878

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              L +++  + +Y Q                      +K   E+    N   R E E+ V
Sbjct: 879  AYLRKNISLMLEYIQL------------------GVDEKPIFEEVRE-NKYERLEREREV 919

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LG Y S HP+   K  ++   +  + +    +   NI +   + S +    +KG  + ++
Sbjct: 920  LGLYVSTHPIVYVKQKIKHP-LVNFVDVENYMD-RNILVVCSISSVRAIVDKKGREMAFI 977

Query: 1019 TFSEPAKEYEANFF 1032
               +   + E   F
Sbjct: 978  EGQDETGQVEFVCF 991


>gi|254181921|ref|ZP_04888518.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1655]
 gi|184212459|gb|EDU09502.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1655]
          Length = 1072

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 277/1053 (26%), Positives = 439/1053 (41%), Gaps = 71/1053 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129  VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L         L  +    +  +        + V + +L  F  LFG+R  + L
Sbjct: 124  YRLTPRMLAAPPRALAHLRGVPDCFAILVPTY--PARADVLDAQLAWFDALFGERARLGL 181

Query: 187  -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             Q  R  D     QV        + +VA  +            D + A+        +  
Sbjct: 182  VQLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMP-IAECG 240

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     R+          +AL  T  +   C F L       P  I         
Sbjct: 241  HALAPNGEQHLRTRQRIAQLFPADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----H 296

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D ++
Sbjct: 297  TPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVK 350

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I    GRGS A SV  Y + +T+++P + +LLFERFL+ +R   PD D+DF   
Sbjct: 351  YARSKDIL-CQGRGSAANSVVCYCIGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQ 409

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K        
Sbjct: 410  RREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGS 469

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               L   A            P +    EI+ +L    RH S H+ G V+    L++LVP+
Sbjct: 470  RDLLARFASV----GLDPEVPLIRTWAEIAARLLNFPRHLSQHSGGFVVSCGKLTRLVPV 525

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDL 598
                     V Q++   +E  GL+K D L L  L+ L ++ D +               L
Sbjct: 526  ENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRL 585

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI   
Sbjct: 586  EHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGG 645

Query: 659  VVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
             V+   +  +        +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD
Sbjct: 646  AVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEAD 705

Query: 712  VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRRAM     K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A
Sbjct: 706  ALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  +
Sbjct: 766  KLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASL 825

Query: 831  G----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                          +   L+ ++G+G   AR I  A A  PF S+++   R     L RR
Sbjct: 826  EAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRA---CLERR 882

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             LE+L  A A      +R   L         A                       D+   
Sbjct: 883  DLEALAAANAFATLAGNRRDALWQ---AVAAAPER------------GLLVAAPIDEAVR 927

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                    +     + R +G   + HP+ + +P L    +           G   R   +
Sbjct: 928  PALGAPTEADDVFADYRTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGRLARACGL 987

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V ++Q   T KG  + +VT  +          P
Sbjct: 988  VTARQMPGTAKG--VLFVTLEDETGCVNVIVRP 1018


>gi|126453110|ref|YP_001064810.1| error-prone DNA polymerase [Burkholderia pseudomallei 1106a]
 gi|242317426|ref|ZP_04816442.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106b]
 gi|126226752|gb|ABN90292.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106a]
 gi|242140665|gb|EES27067.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1106b]
          Length = 1072

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 277/1053 (26%), Positives = 441/1053 (41%), Gaps = 71/1053 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129  VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L         L  +    +  +        + V + +L  F  LFG+R  + L
Sbjct: 124  YRLTPRMLAAPPRALAHLRGVPDCFAILVPTY--PARADVLDAQLAWFDALFGERARLGL 181

Query: 187  -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             Q  R  D     QV        + +VA  +            D + A+        +  
Sbjct: 182  VQLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMP-IAECG 240

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     R+          +AL  T  +   C F L       P  I         
Sbjct: 241  HALAPNGEQHLRTRQRIAQLFPADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----H 296

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D ++
Sbjct: 297  TSTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVK 350

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I    GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   
Sbjct: 351  YARSKDIL-CQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQ 409

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K        
Sbjct: 410  RREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGS 469

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               L   A            P +    EI+ +L    RH S H+ G V+    L++LVP+
Sbjct: 470  RDLLARFASV----GLDPEVPLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPV 525

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDL 598
                     V Q++   +E  GL+K D L L  L+ L ++ D +               L
Sbjct: 526  ENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRL 585

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI   
Sbjct: 586  EHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGG 645

Query: 659  VVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
             V+   +  +        +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD
Sbjct: 646  AVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEAD 705

Query: 712  VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRRAM     K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A
Sbjct: 706  ALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  +
Sbjct: 766  KLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASL 825

Query: 831  G----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                          +   L+ ++G+G   AR I  A A  PF S+++   R     L RR
Sbjct: 826  EAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRA---CLERR 882

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             LE+L  A A      +R   L             +         + A      + +   
Sbjct: 883  DLEALAAANAFATLAGNRRDALW------------QAVAAAPERGLLAAAPIDEAVR--- 927

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                    +     + R +G   + HP+ + +P L    +           G   R   +
Sbjct: 928  PALGAPTEADDVFADYRTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGRLARACGL 987

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V ++Q   T KG  + +VT  +          P
Sbjct: 988  VTARQMPGTAKG--VLFVTLEDETGCVNVIVRP 1018


>gi|254187853|ref|ZP_04894365.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pasteur
            52237]
 gi|254296029|ref|ZP_04963486.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 406e]
 gi|157806301|gb|EDO83471.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 406e]
 gi|157935533|gb|EDO91203.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei Pasteur
            52237]
          Length = 1075

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 277/1053 (26%), Positives = 441/1053 (41%), Gaps = 71/1053 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 12   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 71

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 72   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 126

Query: 129  VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L         L  +    +  +        + V + +L  F  LFG+R  + L
Sbjct: 127  YRLTPRMLAAPPRALAHLRGVPDCFAILVPTY--PARADVLDAQLAWFDALFGERARLGL 184

Query: 187  -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             Q  R  D     QV        + +VA  +            D + A+        +  
Sbjct: 185  VQLQRALDGAHREQVRAAGERRGMHIVALGDVAMHIRSCKPLQDTMTAIRLGMP-IAECG 243

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     R+          +AL  T  +   C F L       P  I         
Sbjct: 244  HALAPNGEQHLRTRQRIAQLFPADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----H 299

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D ++
Sbjct: 300  TPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVK 353

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I    GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   
Sbjct: 354  YARSKDIL-CQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQ 412

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K        
Sbjct: 413  RREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGS 472

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               L   A            P +    EI+ +L    RH S H+ G V+    L++LVP+
Sbjct: 473  RDLLARFASV----GLDPEVPLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPV 528

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDL 598
                     V Q++   +E  GL+K D L L  L+ L ++ D +               L
Sbjct: 529  ENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI   
Sbjct: 589  EHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGG 648

Query: 659  VVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
             V+   +  +        +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD
Sbjct: 649  AVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEAD 708

Query: 712  VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRRAM     K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A
Sbjct: 709  ALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFA 768

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  +
Sbjct: 769  KLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASL 828

Query: 831  G----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                          +   L+ ++G+G   AR I  A A  PF S+++   R     L RR
Sbjct: 829  EAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRA---CLERR 885

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             LE+L  A A      +R   L             +         + A      + +   
Sbjct: 886  DLEALAAANAFATLAGNRRDALW------------QAVAAAPERGLLAVAPIDEAVR--- 930

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                    +     + R +G   + HP+ + +P L    +           G   R   +
Sbjct: 931  PALGAPTEADDVFADYRTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGRLARACGL 990

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V ++Q   T KG  + +VT  +          P
Sbjct: 991  VTARQMPGTAKG--VLFVTLEDETGCVNVIVRP 1021


>gi|162210057|ref|YP_332106.2| error-prone DNA polymerase [Burkholderia pseudomallei 1710b]
 gi|254261216|ref|ZP_04952270.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1710a]
 gi|254219905|gb|EET09289.1| DNA polymerase III, alpha subunit [Burkholderia pseudomallei 1710a]
          Length = 1072

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 277/1053 (26%), Positives = 441/1053 (41%), Gaps = 71/1053 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129  VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L         L  +    +  +        + V + +L  F  LFG+R  + L
Sbjct: 124  YRLTPRMLAAPPRALAHLRGVPDCFAILVPTY--PARADVLDAQLAWFDALFGERARLGL 181

Query: 187  -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             Q  R  D     QV        + +VA  +            D + A+        +  
Sbjct: 182  VQLQRALDGAHREQVRAAGERRGMHIVALGDVAMHIRSCKPLQDTMTAIRLGMP-IAECG 240

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     R+          +AL  T  +   C F L       P  I         
Sbjct: 241  HALAPNGEQHLRTRQRIAQLFPADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----H 296

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D ++
Sbjct: 297  TPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVK 350

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I    GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   
Sbjct: 351  YARSKDIL-CQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQ 409

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K        
Sbjct: 410  RREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGS 469

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               L   A            P +    EI+ +L    RH S H+ G V+    L++LVP+
Sbjct: 470  RDLLARFASV----GLDPEVPLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPV 525

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDL 598
                     V Q++   +E  GL+K D L L  L+ L ++ D +               L
Sbjct: 526  ENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRL 585

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI   
Sbjct: 586  EHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGG 645

Query: 659  VVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
             V+   +  +        +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD
Sbjct: 646  AVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEAD 705

Query: 712  VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRRAM     K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A
Sbjct: 706  ALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  +
Sbjct: 766  KLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASL 825

Query: 831  G----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                          +   L+ ++G+G   AR I  A A  PF S+++   R     L RR
Sbjct: 826  EAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRA---CLERR 882

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             LE+L  A A      +R   L             +         + A      + +   
Sbjct: 883  DLEALAAANAFATLAGNRRDALW------------QAVAAAPERGLLAVAPIDEAVR--- 927

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                    +     + R +G   + HP+ + +P L    +           G   R   +
Sbjct: 928  PALGAPTEADDVFADYRTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGRLARACGL 987

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V ++Q   T KG  + +VT  +          P
Sbjct: 988  VTARQMPGTAKG--VLFVTLEDETGCVNVIVRP 1018


>gi|264678326|ref|YP_003278233.1| DNA polymerase III subunit alpha [Comamonas testosteroni CNB-2]
 gi|262208839|gb|ACY32937.1| DNA polymerase III, alpha subunit [Comamonas testosteroni CNB-2]
          Length = 1136

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 264/1085 (24%), Positives = 429/1085 (39%), Gaps = 112/1085 (10%)

Query: 2    TQYLEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
             Q + + P ++  L   S +S L GA S   ++ +  +    A+A+TD  ++  A+   +
Sbjct: 30   AQGMGRGPLAYAELHCLSHFSFLRGASSPAELVHRAKSLGYAALALTDECSVAGAVRAHE 89

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A  + +  I G +                        IV+LV   +G+  L E ++   
Sbjct: 90   AARDSDLHLIHGSEF-----------------AWGPLRIVVLVRDLQGWGNLCEFITVAR 132

Query: 121  LLDQGKQSVRICLS---WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
                 K    +  S    L + G E L++       P       +        L      
Sbjct: 133  SRAA-KGEYLVDESSPWQLLQQGCECLLL-------PQREQLDASDLIAVTACLENVAAH 184

Query: 178  FGDR-LYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            F    L++ ++ H   D       + Q      LPL+A  +    +       DV+ A+ 
Sbjct: 185  FSTNILWLGVELHLAPDDSLWLQTLQQAGVVLGLPLLACGDVHMHARSRKPLQDVVTAIR 244

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                V  +    + P+     RS +          LE T+E+A RCSF L       P+ 
Sbjct: 245  LGRTV-AECGFALQPNAERHLRSRLRLASLYPWAMLEATLELAGRCSFSLDEIRYHYPQE 303

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                     +     L      G   R  QG        +D   +L  EL +I   K+  
Sbjct: 304  SVLPGMTATQT----LAWLTWDGAAGRYPQG------IPEDVHDQLHKELALIEDQKYEM 353

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL V D +++A+   I    GRGS A S   Y L IT +DP   +LLFERF++ +R   
Sbjct: 354  YFLTVHDIVRYARSVGIL-CQGRGSAANSAVCYCLGITAVDPENNNLLFERFISKERSEP 412

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DF   RR+EVI+Y+  KYG +R A        ++++ALRDVG+AL +P   +D L
Sbjct: 413  PDIDVDFEHARREEVIQYIYGKYGRDRAALTAVVSCWRSRSALRDVGKALGLPADLIDAL 472

Query: 476  CKLIPNDPAH-------------------------PVSLQAIADDSRFREARLADPSVDR 510
             K       H                            +Q    ++      +       
Sbjct: 473  AKGQYWFSEHAQAQAQTHAEAADSAEEEQAPEALPEDWVQRKFQEAEVLAREMNCAVGAH 532

Query: 511  ----LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
                 +E++ +L+   RH S H  G V+ +  L++LVP+     +   V Q++   ++  
Sbjct: 533  RLRLWIELAWQLKDSPRHLSQHVGGFVLTEGKLTRLVPVEPATMAKRSVIQWDKDDLDVV 592

Query: 567  GLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GL+K D L L  LT+L+ +L+     RG    L  IP +D  TY ++    T+G FQ+ES
Sbjct: 593  GLLKVDVLALGMLTMLRNALNERTRWRGEPWGLHQIPQEDAATYEMICQADTVGTFQIES 652

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-----NRKNGKEKIVSIHPLIDP 680
                  L  +QP    D++  V++ RPGPI   +V+       R   K  +    P +  
Sbjct: 653  RAQMSMLPRLQPRTFYDLVVEVAIVRPGPIQGGMVHPYLLARERARRKLPLKLEKPELAN 712

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKN 739
             LK T GV I+QEQVMQIA   + +S  +AD LRR+M     K  + K +   I G    
Sbjct: 713  ALKRTLGVPIFQEQVMQIAMDAAKFSAGKADELRRSMAAWKRKGGVHKFERPLIDGMVAR 772

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G     A  IF  +  F +YGF +SHA ++A+++Y +AW+K H P  FL A +  +    
Sbjct: 773  GYKLEFAQAIFAQMLGFGEYGFPESHAYSFALLAYASAWLKRHEPAIFLQALLNAQPMGF 832

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------------DNRIYYSLAAIKGVGT 847
                +  QDAR+  ++++P  V        +                +   L  +  +G 
Sbjct: 833  YSPSQLVQDARRHGVRVLPVDVCHSHWHCTLEAPLQAMRGVAQPQPAVRLGLNRVARLGK 892

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              A  I   +A  P+  + D   R    +L++  +E+L  A AL      R Q +     
Sbjct: 893  AAALRIEGEAAQAPWKDVSDLAMRA---RLDKADMEALAAADALRSLAGHRRQQMWD--- 946

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
                             ++          +  LE             +    G     HP
Sbjct: 947  ------------AAAQASLPPIFAQAAIHEPRLE-LPQAAEGEEIMFDYAATGLSLRRHP 993

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L + +P L + G+K   E    + G  +R   +V  +Q+  T  G+   ++T  +     
Sbjct: 994  LALLRPRLARHGLKTAAELRHMLPGQKVRACGIVTVRQRPPTANGTL--FITLEDETGVI 1051

Query: 1028 EANFF 1032
                +
Sbjct: 1052 NLVVW 1056


>gi|254487325|ref|ZP_05100530.1| DNA polymerase III, alpha subunit subfamily, putative [Roseobacter
            sp. GAI101]
 gi|214044194|gb|EEB84832.1| DNA polymerase III, alpha subunit subfamily, putative [Roseobacter
            sp. GAI101]
          Length = 1103

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 252/1050 (24%), Positives = 444/1050 (42%), Gaps = 81/1050 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
               +V L V S +S L  A    ++          A+ I D N L   +    +A  A I
Sbjct: 23   PSPYVELGVASCFSFLRAASDAVDLTATANLLGYDAMGIADRNTLAGVVRVYSEASKAKI 82

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD---- 123
            +PI+G +L +                     ++      + Y RL  L+S+  + D    
Sbjct: 83   RPIVGARLVLMCG----------------TDLLAYPRDRDAYARLSTLLSKGKMADVDGG 126

Query: 124  -QGKQSVRICLSWLQEIGTEGL-IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
             Q K +  + L  + +   E L +++       +  A                + L G R
Sbjct: 127  WQEKGTTHLTLEMVAD-HAEDLELIVMPPEELQVFEAGLP----------RLLRALPGLR 175

Query: 182  LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
                   +RG D  R +Q+ +LA  H L ++ATN+ L+         DV+  +     + 
Sbjct: 176  HMGAAYLYRGDDVARINQLDRLAKAHGLGILATNDVLYHGPSRRPLQDVMTCIREGRTIE 235

Query: 242  Q-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                      + YLK  SEM  +F+  P A+  T ++A  C+F L       P  I  E 
Sbjct: 236  TAGFLLEANAERYLKPPSEMCRLFAAWPHAIAATRKLADACTFSLGDLKYEYPHEIVPEG 295

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  + EL      G   R  QG              ++ E  +I   K + YFL +
Sbjct: 296  ----RTAQEELERLTWKGAAERYPQGV------PDRIEAVIEKEFALIRSKKIARYFLTI 345

Query: 361  ADFIQWAKKNNIPV--GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
             D +++A+++  P     GRGS A S   + L IT +DP    +LFERFL+ +R   PD 
Sbjct: 346  NDIVRFARQDAQPPILCQGRGSAANSTVCFCLGITAVDPAEHDVLFERFLSEERDEPPDI 405

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF  +RR+EVI+Y+  KYG  R     T    + ++A+R+VG+A+ +      +L   
Sbjct: 406  DVDFEHERREEVIQYMYAKYGRHRAGLCATVIHYRPRSAIREVGKAMGLSEDVTSKLAST 465

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            +       V    + +        L+DP + R+L +++++ G+ RH S H  G ++ +RP
Sbjct: 466  VWGSFEASVGDDRVKE----AGMDLSDPYLRRVLMLAREMTGMPRHLSQHVGGFILTERP 521

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD- 597
            L+++VP+      D    +++   I+  G+ K D L L  LT + K  D +         
Sbjct: 522  LTEMVPIGNGAMPDRSFIEWDKDDIDALGIFKVDILALGMLTCIAKCFDLMRAHYNDDKE 581

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  TY +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  
Sbjct: 582  LATVPPDDDATYDMLCAGDSLGVFQVESRAQMAMLPKLRPRVFYDLVIEVAIVRPGPIQG 641

Query: 658  IVVYNNRKNGKEK--IVSIHP-------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             +V+   +  + +  +    P        +  +L  T GV I+QEQ M+IA   + ++ +
Sbjct: 642  DMVHPFLRRRQRQEGVSYPAPGPEHPQDELLKILGRTLGVPIFQEQAMKIAIDAAQFTPT 701

Query: 709  EADVLRRAMGKKI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            EA+ LR+AM     +  ++  + + +   +K G     A   F+ +  F +YGF +SHAA
Sbjct: 702  EANELRKAMATFRSRGTIETLQTKMVGRMTKRGYDPEFAQRCFDQIKGFGEYGFPESHAA 761

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            ++A + Y ++WMK HYP  F  A +  +        +  +DAR+  +++    V+    +
Sbjct: 762  SFAKLVYVSSWMKCHYPAAFACALLNSQPMGFYAPAQIVRDAREHGVEVRGVDVDFSDWN 821

Query: 828  FKVG----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
              +        +   +  + G+    A  IM+A  D+P+  + D  +R    +L+R  + 
Sbjct: 822  CTLEPSSDGFALRLGMRQVDGMREDAAARIMDAR-DRPYVDVADLKTRA---RLDRGQIR 877

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
             L  A A+   G  R Q L     +          +      IF +              
Sbjct: 878  KLAEADAMRTMGIDRRQALWQAQAL----------KDAPDLPIFTYADAVDEGAEPPVLL 927

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                 + +   + + L      HP+  ++  LRK G     +      G  + LA +V+ 
Sbjct: 928  PAMPQAEQVVADYQTLRLSLKAHPISFFRSSLRKQGFIAAGDLPGLNHGRKVSLAGLVLV 987

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +Q+  + KG  + ++T  +         +P
Sbjct: 988  RQKPGSAKG--VCFITLEDETGVANLVIWP 1015


>gi|182415861|ref|YP_001820927.1| DNA polymerase III, alpha subunit [Opitutus terrae PB90-1]
 gi|177843075|gb|ACB77327.1| DNA polymerase III, alpha subunit [Opitutus terrae PB90-1]
          Length = 1116

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 281/1094 (25%), Positives = 463/1094 (42%), Gaps = 107/1094 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              +V L   S++S L GA    ++  + A    PA+AI D + +++A    Q A    ++
Sbjct: 8    SDYVELHASSAFSFLRGASQPEDLAAEAARLGLPALAIADRDGVYAAARLYQAARELQLR 67

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL------ 122
             I+G ++ ++                    + LLV+   GY  L  L+S   L       
Sbjct: 68   AIVGAEVTLEDGTA----------------LPLLVTNGTGYANLCRLISTAKLEPREAAV 111

Query: 123  --------------------DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
                                   K+        L E   EGLI LTG   GP+  A+   
Sbjct: 112  VEAWRREHPLVTPADSHEDPRARKRPCFATWRELAE-HAEGLIALTGDEDGPVLSAWRNR 170

Query: 163  SSQVAEKRLLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFL 220
             +  A       + +FG DRLYV LQR R   +      +  LA   +LPL+AT    + 
Sbjct: 171  GADAAAAVAARLQTIFGADRLYVELQRRRQRGEDTALCFLADLAAARQLPLLATGGVRYA 230

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            +  +    DV   +   T +    R      + +L++   M  +F D PEA+ N++ +A 
Sbjct: 231  TRAERPIADVFTCLREHTTLDAAGRLLSPNAERHLRSGRAMAELFQDYPEAVVNSLRLAE 290

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
            R  F LQ                  +  E+ LR +  AG            G      R 
Sbjct: 291  RLDFTLQNLDY----RFPDFPVGPGETMESVLREQTYAGARE-------RIGELTPKLRA 339

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            +LD EL +I ++ F GYFLIV D  QW  +  I +  GRGS A S   YAL IT ++PLR
Sbjct: 340  QLDRELAMINKLGFPGYFLIVWDICQWCHQRGILI-QGRGSAANSAVCYALGITAVNPLR 398

Query: 400  FSLLFERFLNPDR------MSMPDFDIDFCQ-DRRDEVIRYVQNKYGHERVAQIITFGSL 452
            + LLFERFL+  R       S PD D+D    D R+ VI+ +  +Y     A +    + 
Sbjct: 399  YRLLFERFLSEGRVGKDGHPSWPDIDLDLPSGDLRESVIQEIYQRYAPRGAAMVANVITY 458

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512
            + ++A R++G+ L +P   +DR   L  N          +A   +        P +  +L
Sbjct: 459  RGRSAAREIGKVLGLPGDVLDRFSALYAN--GDFPHTLDLAQQVKLSGLPGGHPRLPAML 516

Query: 513  EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
             + ++++GL RH   H+ G+V     L ++VP+         V Q++    E+ GL+K D
Sbjct: 517  ALYRQMQGLPRHLGQHSGGMVFCPNRLDRVVPIENASMEGRRVVQWDKDDCEELGLVKVD 576

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            FLGL  + +LQ +     QRG  + L  +P +D ET   +    T+G+FQ+ES   +  L
Sbjct: 577  FLGLGMMAVLQDAFALCTQRGEPLTLHTVPPEDPETLATIRRADTIGVFQVESRAQQATL 636

Query: 633  EGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPL----IDPMLKETQ 686
              +QP    D+   VS+ RPGPI          R+ G+EK+V +       + P+L+ T 
Sbjct: 637  PRLQPQNFYDVAIAVSIVRPGPIAGRVSHPLIKRRAGEEKVVYLDESVEHLMKPILERTW 696

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTI 745
            GVI++QEQ+++ A +L+G+S ++A+ LRRA G  +    + K  E+   G    G S+ +
Sbjct: 697  GVILFQEQMLETAMVLAGFSGAQAEELRRAFGFNRNTARLRKVVEQLQLGMRARGHSEAV 756

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               + E    FA YGF +SHA ++A+++Y + W+K H P EF A+ +  +          
Sbjct: 757  VQKVLESSTTFAGYGFPESHAISFALLAYASTWLKVHRPAEFTASLLNNQPMGFYSPATL 816

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
             QDAR+  +++    V     +  V  D+ I   L  +KG+     R ++   A + F S
Sbjct: 817  IQDARRHGLKVKAGCVQRSSWECTVEADDTIRIGLRYVKGLREANVRAMLAQRAARAFTS 876

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA----QWVEKNRT 920
            ++D+ +R       RR   +L   GAL      R   L  ++          Q   +  +
Sbjct: 877  IDDWLARTSFSAAERR---ALAAVGALRTLASHRRAALWQVEAAWSAEETLLQQAGQESS 933

Query: 921  NKHENIFAHEKGTFSDKI---------------------TLEKFSVENSSVRFENEQRVL 959
                +      G  + +                      T    +    + R   + R +
Sbjct: 934  GTGVSPVESTPGDTTKEDRQIITKRMPESTDMGGTLMPRTATPLAPMTPAERMHADFRGM 993

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
                  HP+ + +  L    +    +      G  +++A  V+ +Q+  T KG    +V+
Sbjct: 994  NLTVGTHPMALVRERLPD--VWRAADLPLGRDGERVKVAGSVICRQRPGTAKG--FVFVS 1049

Query: 1020 FSEPAKEYEANFFP 1033
              +         +P
Sbjct: 1050 LEDETGIANVVVYP 1063


>gi|27378137|ref|NP_769666.1| error-prone DNA polymerase [Bradyrhizobium japonicum USDA 110]
 gi|71151816|sp|Q89QU8|DNAE2_BRAJA RecName: Full=Error-prone DNA polymerase
 gi|27351284|dbj|BAC48291.1| DNA polymerase III alpha chain [Bradyrhizobium japonicum USDA 110]
          Length = 1151

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 250/1105 (22%), Positives = 437/1105 (39%), Gaps = 132/1105 (11%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P++  + + +++S L G       + + +     AI I D N L   +   ++     
Sbjct: 2    NTPAYAEIGITTNFSFLRGGSDPRAYVHQASILGISAIGIADHNTLAGVVRAYKELDNDK 61

Query: 67   I----QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
            +    + +IG ++                     P I++       Y RL +L++R    
Sbjct: 62   VLHKPKLLIGARIVFIDG---------------TPDILVYPRDRAAYGRLCQLLTRGKRG 106

Query: 123  DQ----GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
            D      K   R+  S L       L++LT        +A            L   K   
Sbjct: 107  DDVTRIEKGECRLTFSDLLAFSEGQLLVLTLPHRFEPAQAL---------DVLAKLKATR 157

Query: 179  GDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             + +++     HRG DR R +++  LA T ++ L+ATN  L+         DVL  +   
Sbjct: 158  AEGVWLAASLVHRGDDRRRLARLDDLATTAKVQLLATNEVLYHDPARRPLQDVLTCIREK 217

Query: 238  TVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
            T +    R      + +LK   EM  +F D P+A+  T+  A +  F L       P   
Sbjct: 218  TTIEAVGRKLEANAERFLKTPREMSRLFRDFPDAIAETMRFANKIDFSLDQLRYQYPDEP 277

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                    K  +  L +   AG++   A      G      R  L  EL +IA +K++ Y
Sbjct: 278  VPPG----KTAQGHLEDLTWAGVDKYFA------GKIDDKLRATLKKELALIAELKYAHY 327

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V D + +A+  NI    GRGS A S   Y L IT +DP +  LLFERF++ +R+  P
Sbjct: 328  FLTVHDIVHYARSQNIL-CQGRGSAANSAVCYVLGITSVDPTKVDLLFERFISKERLEPP 386

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF   RR+EV++YV  +YG  R A I T    + ++A+RDVG+AL +       L 
Sbjct: 387  DIDVDFEHSRREEVMQYVYRRYGRHRAAIIATIIHYRPRSAIRDVGKALGLTEDVTAALA 446

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
              +       ++   +            +P ++  +E++ +L    RH S H  G V+  
Sbjct: 447  DTVWGSWGSGLNDMQVKQ----AGLDPQNPMINLAVELATELIEFPRHLSQHVGGYVLTQ 502

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
              L   VP+      D    +++   ++   ++K D L L  LT ++K  D + Q    +
Sbjct: 503  DRLDTYVPIGNAAMDDRTFIEWDKDDVDALNMMKVDVLALGMLTCIRKCFDLIDQHKGER 562

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD + Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI
Sbjct: 563  WVLASVPQDDPKVYDMLCDGESLGVFQVESRAQMNMLPRLKPRTFYDLVIEVAIVRPGPI 622

Query: 656  DNIVVYN--NRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
               +V+    R+NG+EK+    P         +  +L +T+GV ++QEQ M+IA   + +
Sbjct: 623  QGDMVHPYLRRRNGQEKVNYPSPSPEHGPADELYKVLHKTKGVPLFQEQAMRIAIEAAKF 682

Query: 706  SLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            +  EA+ LRR+M        + K +++ I      G     A + F+ +  F  YGF +S
Sbjct: 683  TSEEANGLRRSMATFRNVGTIGKYEDKLIGNMVARGYDPNFARSCFDQIKGFGSYGFPES 742

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAA++A + Y ++W+K H+P  F    +  +        +   DAR+  +++    V+  
Sbjct: 743  HAASFAQLVYISSWLKYHHPDAFCCGLLNSQPMGFYAPAQIVGDARKNGVEVRDIDVSYS 802

Query: 825  CVDFKVGDN-----RIYYSLAAIKGVG--------------------------------- 846
                 +         +      I G                                   
Sbjct: 803  FAQNTLEQGSGKYCAVRLGFRQIDGFHWLDEDEEHLKRSLLSFRGAPLGANPESIGPHMP 862

Query: 847  ------------------TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                                 A  I+ A   +PF SLEDF        L +R L  L  A
Sbjct: 863  GGMDSGLDAGASPRNDKKEDWANRIVAARNRRPFTSLEDFAR---DTGLPKRALILLADA 919

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
             A    G  R + L  +  +                 +F             +   +   
Sbjct: 920  DAFRSLGLDRREALWQVRRLPDDV----------PLPLFEAATAREQPDEHAKPLPLMPR 969

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              +   + + +     GHP++  + +L +  +   ++         +R A +V+ +Q+  
Sbjct: 970  PEQVVADYQTIRLSLKGHPMEFLREMLSRERVVACKDVNHQNERRRVRCAGVVLVRQRPG 1029

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  G  + ++T  +         +P
Sbjct: 1030 SASG--VVFMTLEDETGIANVVVWP 1052


>gi|78046782|ref|YP_362957.1| DNA polymerase III alpha chain protein [Xanthomonas campestris pv.
            vesicatoria str. 85-10]
 gi|123585634|sp|Q3BWA6|DNAE2_XANC5 RecName: Full=Error-prone DNA polymerase
 gi|78035212|emb|CAJ22857.1| DNA polymerase III alpha chain protein [Xanthomonas campestris pv.
            vesicatoria str. 85-10]
          Length = 1082

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 259/1047 (24%), Positives = 449/1047 (42%), Gaps = 88/1047 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + + A G++
Sbjct: 46   PAYAELHCLSDFSFLRGASSAEQLFVRAQHCGYSALAITDECSLAGIVRGLEASRATGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                      VLLV  A GY +L  L++        K +
Sbjct: 106  LIVGSEFALVDG----------------TRFVLLVENAHGYPQLCGLITTAR-RAASKGA 148

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+  + +Q    +         +  +   +   +   AE+     +++FG+R ++ ++ 
Sbjct: 149  YRLGRAEVQAQFRD--------VAPGVFALWLPGAQPQAEQGA-WLQQVFGERAFLAVEL 199

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D   R   +  LA    +  +A+ +       +    D L A+ H T+   +    
Sbjct: 200  HREQDDVARLQVLQALAQQLGMTALASGDVHMAQRRERIVQDTLTAIRH-TLPLAECGAH 258

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +  +     R+            L+ TVE+A+RC+F +       PR +  +        
Sbjct: 259  LFRNGERHLRTRRALGNIYPDGLLQATVELAQRCTFDISKLQYTYPRELVPQG----HTP 314

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR    AG+  R   G        +  R  ++ EL +IA +++  +FL V D +++A
Sbjct: 315  ASYLRQLTEAGMRERWPDGV------PKKIRDDIENELALIAELEYEAFFLTVQDVVRFA 368

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  +I    GRGS A S   YAL+IT +DP +  LL  RFL+  R   PD D+DF  +RR
Sbjct: 369  RSKDIL-CQGRGSSANSAVCYALSITSVDPSKTRLLISRFLSKARNEPPDIDVDFEHERR 427

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L            
Sbjct: 428  EEVLQYVYAKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGETP 487

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              Q I +        LA+P ++++L ++  L    RH S H  G VI D PLS LVP+  
Sbjct: 488  MEQRIEE----AGFDLANPLINKILLVTDHLRDHPRHLSQHVGGFVISDEPLSLLVPVEN 543

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
               +D  + Q++   +E   L+K D L L  LT ++K+LD +   R     L+ +P +D 
Sbjct: 544  AAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRHRDYTLATLPDEDA 603

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+   + 
Sbjct: 604  ATYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGDMVHPYLQR 663

Query: 667  GKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-E 723
             K+K  I      ++ +L  T G+ ++QEQVM++  + +GY   EAD LRR+M    +  
Sbjct: 664  RKDKSLINYPSEGVEQILGPTLGIPLFQEQVMELV-IHAGYDPDEADKLRRSMAAWRRGG 722

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +M+  + R  +     G + +    IFE +  F  YGF +SHAA++A + Y + W+K H 
Sbjct: 723  DMESHRLRIRALMEGKGYASSFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRHE 782

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQD-----ARQFNIQIMPPSVNTPCVDFKVGDN----- 833
            P  F    +  +        +  QD       +  ++++P  V     D  +        
Sbjct: 783  PAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVLHSDWDNTLVGGRPWRS 842

Query: 834  --------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                     I   +  + G+    A+ I+ A   + F  + D C R     L+ +   +L
Sbjct: 843  AADPGEQPAIRLGMRQVAGLSQVVAQRIVAARTQRAFADIGDLCLRA---ALDEKARLAL 899

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              AGAL     +R      +  ++     +                   S +     F  
Sbjct: 900  AEAGALHGLVGNRNAARWVMAGVEARRPLL-----------------PGSPEERPVAFEA 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
              +      + R +G     HP+ + +P +R+  I G  E      G+ + +A +V  +Q
Sbjct: 943  PRAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRELQGRRHGSGVHVAGLVTQRQ 1002

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  T KG+   +VT  +         +
Sbjct: 1003 RPATAKGT--IFVTLEDEQGMINVIVW 1027


>gi|300214577|gb|ADJ78993.1| DNA polymerase III alpha subunit [Lactobacillus salivarius CECT 5713]
          Length = 1097

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 305/1025 (29%), Positives = 499/1025 (48%), Gaps = 47/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV SSYSLL+  L +   +         A+ +TD N+++  L+F  +   AGI+PI
Sbjct: 2    YAPLQVLSSYSLLQSPLRIPEYVKLGKELGYNALVLTDINSMYGVLDFYHECVKAGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L              ++        + +   + GYQ L+ + S+            
Sbjct: 62   IGITL--------------QSGDDEY---IFIAKNSNGYQNLMNISSKRLTAVDENYKNI 104

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              L+ + E   + +++L    S         +     +  +        +  Y  +    
Sbjct: 105  FKLADITEYLQDVIVILK--PSYLTVNDIISDQVTELQTLVSA-----AETTYYGV---N 154

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              DR   +  +  A   +L  +      +L E DY +  VL A+     V+     +   
Sbjct: 155  PNDRDAINNDLMAAEKLQLETILLTPVKYLKERDYFSTKVLQAIGTGENVNPNWNFKNDG 214

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            ++              L  A +N + +  +C+  L      LP F E          E  
Sbjct: 215  NYLHTPEEYERLGTDYLSSAYQNAINVIAQCNLTLNFPKTQLPHFKETNG----LSSEGF 270

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL  R+A+  I      ++Y+ RLD+EL+VI RM F  YFLIV D   +A +N
Sbjct: 271  LRKLCQEGLAKRIAEENIKNQ---EEYQNRLDYELSVIHRMGFDDYFLIVWDVTNFAHEN 327

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            NI  GPGRGS AGS+ +Y L ITDIDP+++ L+FERFLN +R  MPD D+D    +RD +
Sbjct: 328  NILTGPGRGSAAGSLVSYTLYITDIDPIKYDLIFERFLNEERAQMPDIDLDIPDIKRDTI 387

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I Y+  KYG + +AQIITFG+L+ K  LRDV R   +   + D   K IP +    +   
Sbjct: 388  IEYLHQKYGQQHMAQIITFGTLKTKQVLRDVARVFDLKTYEADAWSKAIPKEYGITLKEA 447

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
              A     +     +     L E +  LEGL RH STHAAGI++ D  L   VP+     
Sbjct: 448  -YASSQSLKNLVADNSKNRLLFETAIALEGLPRHYSTHAAGIILSDDDLIDHVPVQ-IGG 505

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
              + ++QF    +E+ GL+K DFLGL+ L++L+ ++  + +   V  D+  I  DD ET 
Sbjct: 506  DGILMSQFAKNQVEEVGLLKMDFLGLRNLSILENTITLIKKGYHVDFDIRKINLDDPETL 565

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             +     T G+FQ ES+G+R  L  ++P   ED+ A+ +LYRPGPI NI  +  RK+G+ 
Sbjct: 566  KIYQNAETSGVFQFESAGIRGVLTKLKPTSFEDVAAVNALYRPGPIQNIDEFIARKHGER 625

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I      ++ +LK+T G+++YQEQVMQ+A  + G++L +AD LRRAM KK  + + + +
Sbjct: 626  PITYPSKELEGILKQTYGIMVYQEQVMQVASTMGGFTLGQADSLRRAMSKKKHDIISRME 685

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI+GA K G +  +A  ++  + +F DYGFN+SHA AY+ +S++ A++K HYP  F A
Sbjct: 686  VMFINGAMKKGYTHEVAKKVYAYIMEFGDYGFNRSHAVAYSKMSFELAYIKAHYPAAFFA 745

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +   + N  K K +  +A+   +++  P +N     + + +  IY+ L+ IK +    
Sbjct: 746  ALLNSVIGNPRKTKDYVLEAKNKGVRVHHPDINISQSLYILRNGEIYFGLSCIKSLRKNF 805

Query: 850  ARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++    +  F ++EDF  R+D + L R ++E L+++G  D FG SR +L   L  +
Sbjct: 806  LQDILQERKRNGIFKNMEDFLQRIDKRYLKRELIEILIYSGVFDTFGQSRRELFAMLPRL 865

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                +    N       +F+      +    +      ++    E E   LG Y SGHP+
Sbjct: 866  LSNIELSGNNVE-----LFSMLAPKKTTVEKI----EISNDELLEKENYYLGAYLSGHPV 916

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            + Y  ++         +   + +   + +   +   +  +T+ GS++ +VT ++     +
Sbjct: 917  EKYTELIYLTNSTRVSQINESNKDKYVSMILQIKVIKIIRTKNGSQMAFVTAADQTGNMD 976

Query: 1029 ANFFP 1033
              FFP
Sbjct: 977  LTFFP 981


>gi|309782805|ref|ZP_07677526.1| error-prone DNA polymerase [Ralstonia sp. 5_7_47FAA]
 gi|308918583|gb|EFP64259.1| error-prone DNA polymerase [Ralstonia sp. 5_7_47FAA]
          Length = 1079

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 261/1074 (24%), Positives = 436/1074 (40%), Gaps = 94/1074 (8%)

Query: 5    LEKS------PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
            +  +      P +  L   S+++ L GA   + ++++       A+A+TD  ++      
Sbjct: 1    MTSATPPPVLPDYAELHCISNFTFLTGASHPSELVERAKLYGYQALALTDECSVAGTARA 60

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
               +    ++ IIG +  +   D                 +VLL    EGY  L E+++ 
Sbjct: 61   LVASKEHELKLIIGSRFTVRNADGEPWL-----------RLVLLAQNIEGYGNLSEIITH 109

Query: 119  MYLLDQGKQSVRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
              L    K   R+    L     E   L       +  +         Q    +    ++
Sbjct: 110  ARLA-ASKGEYRLLADDLASPQGELAHLRGAPDCLAILLPDY--DPDPQQLLAQAWWCQR 166

Query: 177  LFGDRLYVNLQ---RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +FGDRL + L+   RH   D      V+ ++   ++P+VAT      + +    HDVL A
Sbjct: 167  VFGDRLSIALELPLRH--ADDRHRGTVLAVSEQIDVPMVATGGVQMHTRQRKPLHDVLTA 224

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD---LPEALENTVEIARRCSFILQVHAP 290
            +  S  +S+                  ++         + L  TVE+A  C+F L     
Sbjct: 225  IRLSKPLSECGLELAPSAEQAMRTRMQLAFLYQGEGGEKILRRTVELAALCNFSLDEIEY 284

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
              P  +  E           LR +  AG   R   G       +     +++ EL +IA 
Sbjct: 285  EYPSEVVPEGMM----PAEYLRAETFAGAARRYPNGV------SDKVHAQIEEELGLIAE 334

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            + +  +FL V D +++A+   I    GRGS A S   Y L IT+++P   + LF RFL+ 
Sbjct: 335  LGYEPFFLTVYDVVKFARNEGIL-CQGRGSAANSAVCYCLGITEVNPDSGNTLFARFLSR 393

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
             R   PD D+DF   RR+EVI+Y+  KYG  R A      + + ++ALRDVGRAL +   
Sbjct: 394  ARNEPPDIDVDFEHQRREEVIQYIYKKYGVTRTALAAALITYRTRSALRDVGRALGIDLG 453

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
             V+++ K      +        A  +  +      P V R  ++  +L G  RH S H  
Sbjct: 454  IVEQVAKGQAWWDSRK----EFAQRAGQQGLDPESPLVLRWAQLVDQLRGFPRHLSQHVG 509

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G VI    LS+LVP+      +  V Q++   +E   L+K D L L  LT ++++LD + 
Sbjct: 510  GFVIAQGKLSRLVPIENAAMENRRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDMVD 569

Query: 591  ----QRGVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
                +R          +  +P DD ETY ++    T+G+FQ+ES   +  L  ++P    
Sbjct: 570  ALPGRREHYGATAKLAMQHLPDDDTETYDMICRAETIGVFQIESRAQQSMLPRLRPREYY 629

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEK-------IVSIHPLIDPMLKETQGVIIYQEQ 694
            D++  V++ RPGPI   +V+   +  + K       +    P +  +L+ T GV I+QEQ
Sbjct: 630  DLVIQVAIVRPGPIQGGMVHPYLQRREAKRNGNTDCVTYPGPEVKAVLERTLGVPIFQEQ 689

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA--SKNGISKTIAVNIFEL 752
            VM+IA     ++  +AD LRR M    ++    Q +  +  A   K          + + 
Sbjct: 690  VMEIAMKAGDFTADDADRLRRDMAAWKRKGNLTQHQERLVHAMVVKRRYDPAFVEALCKQ 749

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  FA+YGF +SHAA +A ++Y ++++K H P  F AA +  +        +  Q+AR+ 
Sbjct: 750  MEGFAEYGFPESHAAGFAKLAYVSSFLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRS 809

Query: 813  NIQIMPPSVNTPCVDFKV---------GDN----RIYYSLAAIKGVGTTTARHIMEASAD 859
            +++++P  V     D  +          D      I   L  I+G+    A  I  A A 
Sbjct: 810  HVRVLPADVTASVWDSTLHPRADGETGEDGLVQPDIRLGLNRIRGMRKPAAERIEAARAQ 869

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             PF S+ED   R     L+R  L  L  A AL      R Q L     +Q+  +     R
Sbjct: 870  APFTSVEDLAHRA---ALDRHDLNVLAAANALKSLAGHRRQALWQTLALQEPGRDHALLR 926

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
              +                   +            +   LG     HP+ + +  L +M 
Sbjct: 927  QAR-------------PVEAPLELPAPPIGEEVMADYGSLGLSLQSHPVGLLRARLDRMR 973

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                        G   R   +V  +Q+  T KG+   +V+  +         +P
Sbjct: 974  FATAATLAGYRNGQLARACGIVTVRQRPGTAKGT--IFVSIEDETGAINVILWP 1025


>gi|120611396|ref|YP_971074.1| DNA polymerase III subunit alpha [Acidovorax citrulli AAC00-1]
 gi|120589860|gb|ABM33300.1| error-prone DNA polymerase, DnaE-like protein [Acidovorax citrulli
            AAC00-1]
          Length = 1044

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 270/1036 (26%), Positives = 448/1036 (43%), Gaps = 70/1036 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L+  SS+S L GA   + ++++ A     A+A+TD  +L   +     A   G+Q
Sbjct: 14   PAYAELRCASSFSFLIGASHPHELVERAAQLGYTALALTDECSLAGIVRAHVAAKQCGLQ 73

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G Q  +     +              ++ +L    EGY  L   ++R+    Q K +
Sbjct: 74   LLVGAQFKVAPDGGMPP-----------CTLTVLACDLEGYGNLCAFITRLRRAAQ-KGT 121

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
              +    L      G +++   S   +  A         +       + F  R ++ +  
Sbjct: 122  YELAARDLSGKDLAGCVVI--CSPERMSAAI------QLQTLAEWLLRHFMGRCWIGVEM 173

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              +  D    +++   +    LPLVAT +  F         D + AV     +++     
Sbjct: 174  LRQIDDEAWLARLRATSEASALPLVATGDVHFHVRSRKPLQDTMTAVRLGRPLAECGLDL 233

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                     R+ +    +   E LE T+ +A RC F L       P  +    +      
Sbjct: 234  QPNA-ERHLRTRLRLAQTYPAELLEETLRVAARCDFSLDELRYNYPAEVVPPGE----TP 288

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR     G   R   G           ++ ++ EL++I  +++  YFL VAD + +A
Sbjct: 289  ASHLRRLTYEGAARRWPAG------IPPKVQEIVEHELSLIEDLRYEHYFLTVADIVDFA 342

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I    GRGS A S   Y L +T++DP R S+LFERFL+ +R   PD DIDF   RR
Sbjct: 343  RSRGIL-CQGRGSAANSAVCYCLHVTEVDPARMSVLFERFLSRERNEPPDIDIDFENARR 401

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KYG ER A      S + ++ALRDVG+AL      V  L K         V
Sbjct: 402  EEVIQYLYGKYGRERAALTAVVTSYRPRSALRDVGKALGFDEGTVSALAKDHQWWEEDSV 461

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              + +    +       D  V +LLE++++L G  RH S H  G V+   PL ++VP+  
Sbjct: 462  RDEQL----QALGLDAEDLRVRQLLELTEQLLGFPRHLSQHPGGFVLTQDPLCRMVPIEN 517

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV---DLSLIPFD 604
                D  V Q++   ++ AGL+K D L L  LT ++K+L  + Q        DL  IP +
Sbjct: 518  AAMEDRTVIQWDKDDLDAAGLLKVDVLALGMLTAIRKALVMVGQIRGLDDALDLQDIPAE 577

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662
            D  TY +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGPI   +V+   
Sbjct: 578  DPATYEMLCRADSIGVFQVESRAQMSMLPRLRPRCFYDLVVQVAIVRPGPIQGGMVHPYL 637

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721
            +R+ G   +      +  +L  T GV ++QEQVMQ+A + +G+S  EAD LRRAM     
Sbjct: 638  DRRQGLVPVTYPSEALREVLGRTLGVPVFQEQVMQLAIVAAGFSAGEADGLRRAMAAWKR 697

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K  ++K   + + G    G  +  A  +F  +  F++YGF +SHAA++A++ Y ++W+K 
Sbjct: 698  KGGLEKYHAKLVDGMLARGYEREYAERVFLQVYGFSEYGFPESHAASFALLVYASSWIKR 757

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----NRIYY 837
            H+P  FLAA +  +        +  QDAR+  + +  P V     D  + D      +  
Sbjct: 758  HHPAAFLAALLNSQPMGFYSPSQLVQDARRHGVGVRAPDVLHSGWDCTLEDLPHAPAVRL 817

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  + G+G   A  I  A A++PF  +ED   R     L++  L  L    AL      
Sbjct: 818  GLRLVNGLGQAAAERIEAARAERPFQDVEDLALRAS---LDQPTLRVLAGGDALASLAGH 874

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R Q +         A  + ++       +               +            +  
Sbjct: 875  RRQQVWDAAGQH-AAPALLRDAPVGEAML---------------ELPEAPEGDAVVQDYS 918

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             LG     HP+ + +P LR+      E+      G  +    +V  +QQ  T KG+   +
Sbjct: 919  ALGLTLRSHPVALLRPQLRRY--HTAEQLANVRDGFRLAACGLVTLRQQPGTAKGT--IF 974

Query: 1018 VTFSEPAKEYEANFFP 1033
            V+  +     +   +P
Sbjct: 975  VSIEDETGTVQVIVWP 990


>gi|134297021|ref|YP_001120756.1| error-prone DNA polymerase [Burkholderia vietnamiensis G4]
 gi|134140178|gb|ABO55921.1| DNA polymerase III, alpha subunit [Burkholderia vietnamiensis G4]
          Length = 1071

 Score =  559 bits (1440), Expect = e-156,   Method: Composition-based stats.
 Identities = 267/1061 (25%), Positives = 447/1061 (42%), Gaps = 72/1061 (6%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +   +   P +  L   S++S L GA     ++ + A      +AITD  +L  A     
Sbjct: 1    MAAQITWLPDYAELFCRSNFSFLHGASHAEELVARAAELGYRGLAITDECSLAGAPRMHV 60

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A A G+  ++G    +   +       G  P P    +VLL    EGY  L EL+S   
Sbjct: 61   AAQAQGLPLVVGAYFAVTPDE----VAPGHDPGPGAFGLVLLAQNREGYGNLAELISW-R 115

Query: 121  LLDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             +   K +  +    L         L  +    +  +    +   + V + ++  F+  F
Sbjct: 116  RMAAPKGTYTLTSRMLSAPPAAFAHLRGMPDCFAILVP--VYPVRADVLDAQVAWFRATF 173

Query: 179  GDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            G+R  + L Q  R  D  +  ++        +P+VA  +            DV+ A+   
Sbjct: 174  GERARLGLVQLQRALDGAQREEIRAAGERRGVPVVALGDVTMHRRSCKPLQDVMTAIRVG 233

Query: 238  TVV-SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              V           + +L++R  +  ++S    A   T EI   C F L       P  I
Sbjct: 234  MPVAECGYALAPNAEQHLRSRQRIGQLYSPDEIA--QTCEILDACDFELGSLRYEYPDEI 291

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                          L  + +AG   R  +G        +   + +  EL++IA++ +  +
Sbjct: 292  VPAG----LTPTRYLEQETLAGARARYPRGV------PEKVAKLIRHELDLIAKLSYEPF 341

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V D +++A+  NI    GRGS A SV  Y L IT++DP + ++LFERF++  R   P
Sbjct: 342  FLTVYDIVKFARSRNIL-CQGRGSAANSVVCYCLGITEVDPDQSTMLFERFISEKRGEPP 400

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF   RR+EVI+++  KYG +R A      + + +  LR+ G+AL +    VDR+ 
Sbjct: 401  DIDVDFEHQRREEVIQHIYRKYGKDRAAIAAAVSTYRPRGVLRETGKALGVDPMLVDRVA 460

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            K           L+  A          A P +     ++ +L    RH S H+ G VI  
Sbjct: 461  KAHRWFDGSRDLLKQFAST----GLDPATPLIATWATLAARLLNFPRHLSQHSGGFVISR 516

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--- 593
              L++LVP+         V Q++   +E  GL+K D L L  L+ L ++ D         
Sbjct: 517  GKLTRLVPVENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWRGPQ 576

Query: 594  ---VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                   +  +P DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ 
Sbjct: 577  PDGEPFTMKHVPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLKPRNYYDLVVQVSIV 636

Query: 651  RPGPIDNIVVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            RPGPI    V+   K  +        K+      +  +L+ T GV I+QEQVMQIA + +
Sbjct: 637  RPGPIQGGAVHPYLKRRRIMSGEEQGKVTYPSDALKEVLERTLGVPIFQEQVMQIAIVAA 696

Query: 704  GYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            G++  EAD LRRAM     K  ++K  ++ + G      ++  A  IFE +  F +YGF 
Sbjct: 697  GFTPGEADELRRAMAAWKRKGNLEKYHDKIVEGMLARNYTREFAEQIFEQIKGFGEYGFP 756

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            +SHAA++A ++Y ++W+K H P  F+AA +  +        +  QDA++  +Q++P  V 
Sbjct: 757  ESHAASFAKLAYASSWLKCHEPAIFVAALLNSQPMGFYAPAQLVQDAKRHGVQVLPADVT 816

Query: 823  TPCVDFKVG----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
                +  +              +   LA ++G+G   AR I  A A  PFDS++    R 
Sbjct: 817  QSGWETSLEALPGQPPPHGQPAVRLGLALVRGLGEAAARRIEAARAAGPFDSVDALARRA 876

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
               +L RR LE+L  A AL      R   L             +        ++ A    
Sbjct: 877  ---QLERRDLEALAAANALAALAGHRRDALW------------QAVAAAPERDLLAAAPI 921

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
              +++         + +     +   +G   + HP+ + +P LR   +    E      G
Sbjct: 922  DETEQ---PALGAPSEADDILADYHTIGLTLNRHPVALLRPALRAQRLSSAAELRDRPDG 978

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               R   +V+++Q   T KG  + ++T  +          P
Sbjct: 979  RLARACGLVIARQMPGTAKG--VMFMTLEDETGCVNVIVRP 1017


>gi|58337253|ref|YP_193838.1| DNA polymerase III alpha-chain [Lactobacillus acidophilus NCFM]
 gi|227903838|ref|ZP_04021643.1| possible DNA-directed DNA polymerase [Lactobacillus acidophilus ATCC
            4796]
 gi|58254570|gb|AAV42807.1| DNA polymerase III alpha-chain [Lactobacillus acidophilus NCFM]
 gi|227868725|gb|EEJ76146.1| possible DNA-directed DNA polymerase [Lactobacillus acidophilus ATCC
            4796]
          Length = 1035

 Score =  559 bits (1440), Expect = e-156,   Method: Composition-based stats.
 Identities = 323/1024 (31%), Positives = 536/1024 (52%), Gaps = 44/1024 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+    ++++++        ++ +TD N  +  + F + A  AGI+P++G 
Sbjct: 6    LQNLSSFTLLDSPTKVSDLINTAKEKGYQSVGLTDINVTYGLVNFYELAKKAGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
            Q+ ++          G         +++   +  GY  L+ L S + L  + G+    + 
Sbjct: 66   QVRLN----------GLIDSTQKYDLIVFAKSDAGYHNLLRLSSAINLLTENGQNDKILT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L  L +  ++ L+++   +   +  A F  + Q+    L   +KL    +Y+ +   +  
Sbjct: 116  LKELTKYLSDLLVIVPANTKSELV-ALFETNQQLGSDFLRELRKL-SSDVYLGVYASKNG 173

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPD 251
            + Y    +  L     LPLVA  ++ +L   D      L ++     +       + +  
Sbjct: 174  ENYIN-YLRTLNKQFNLPLVAVEDTEYLKPRDQFLQKTLRSINSGQKLQDILPLAKQSGS 232

Query: 252  HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            HYL +  +++  +   DL EA+ NT +IA+ C+  +    P+LP++ +    +     E 
Sbjct: 233  HYLASAEDVLERYHQLDLDEAVNNTWKIAQECNANVVFQKPVLPKYRQ----NKFTTSEE 288

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR  A  GL+ R  Q  I       +Y++RL++EL +I +M F  YFLIV D + +  +
Sbjct: 289  YLRYLARTGLKDRFKQKTI-----PAEYQKRLNYELRIINQMGFDDYFLIVWDVVNYCHR 343

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS  GS+ +YAL IT++DPL ++LLFERFLNP R  MPD D+D    +RD 
Sbjct: 344  VKITTGPGRGSACGSLVSYALKITEVDPLEYNLLFERFLNPARHEMPDIDLDIPDVQRDT 403

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+  KYG +  AQI+TFG+L AK ALRDVGR   +   ++++  + IP         
Sbjct: 404  VIKYMYQKYGMDHAAQILTFGTLAAKQALRDVGRVFGLTMVEINKWARAIPYSKGKISLK 463

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            QA  +    R    A      L + +  LEGL RH S HAAG+VI D  ++ +  +    
Sbjct: 464  QAYEESRELRLLVDATQENKLLFQTAMNLEGLPRHYSIHAAGLVISDDSIAGISGLQ-AG 522

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
               +PVTQ   K++E  GL+K DFLGL+ LT+L   L+ + ++G+K+D + IP DD ET 
Sbjct: 523  PLGIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILNLICEQGIKIDPNEIPLDDSETL 582

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T  IFQ ES G+RQ L  + P+  ED++A+ +LYRPGP+ NI ++  RKNG+ 
Sbjct: 583  QLFQEGKTDAIFQFESGGIRQVLRKLHPNNFEDLVAVNALYRPGPMQNIDIFIARKNGQA 642

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK ++ ++++K
Sbjct: 643  GVKYPDPSLKRILQPTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKKQDVIEQEK 702

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FISG  K G +K +   ++  + +FA+YGFN+SHA AY  +++  A++K HYP  F  
Sbjct: 703  SKFISGTIKKGHAKEVGERVYRYIEQFANYGFNRSHAVAYTKVAFWLAYLKVHYPAAFYT 762

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +        +   +   A++ NI+++ P +N   +D+ + +  I   L AIKG+    
Sbjct: 763  AMLNSSTSVKAQ--SYIMQAQEANIKVVSPDINQSKLDYSLDNKNILVGLKAIKGLRMDF 820

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A+ I  A+  KP+ SL DF  R+D K L    +E+L+ AGA D    +R +LL +   I 
Sbjct: 821  AQEI--ANNTKPYKSLNDFLRRIDPKFLQVDAIEALIMAGAFDQIEDNRNELLINCKEII 878

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               Q   +N      ++             L+      ++ + E E++VLGF  +  PL 
Sbjct: 879  ANVQLTGQN-----MSL-----SEILGDAPLKHADKPTNAEKAEMEEKVLGFTTTTTPLV 928

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   RK   +   +      G ++     ++  +  +T+ G  + + +F++ + E E 
Sbjct: 929  AVQKFARKFNARPLSQFQINESGISV---GKLMKFKPIRTKNGKNMAFASFADSSSEQEV 985

Query: 1030 NFFP 1033
              FP
Sbjct: 986  IIFP 989


>gi|299532169|ref|ZP_07045563.1| DNA polymerase III, alpha subunit [Comamonas testosteroni S44]
 gi|298719831|gb|EFI60794.1| DNA polymerase III, alpha subunit [Comamonas testosteroni S44]
          Length = 1136

 Score =  559 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 267/1084 (24%), Positives = 431/1084 (39%), Gaps = 112/1084 (10%)

Query: 3    QYLEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            Q +++ P ++  L   S +S L GA S   ++ +  +    A+A+TD  ++  A+   + 
Sbjct: 31   QGMDRGPLAYAELHCLSHFSFLRGASSPAELVHRAKSLGYAALALTDECSVAGAVRAHEA 90

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A  + +  I G +                        IV+LV   +G+  L E ++    
Sbjct: 91   ARDSDLHLIHGSEF-----------------AWGPLRIVVLVRDLQGWGNLCEFITVARS 133

Query: 122  LDQGKQSVRICLS---WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
                K    +  S    L + G E L++       P       +        L      F
Sbjct: 134  RAA-KGEYLVDESSPWQLLQQGCECLLL-------PQREQLDASDLIAVTACLENVAAHF 185

Query: 179  GDR-LYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
                L++ ++ H   D       + Q      LPL+A  +    +       DV+ A+  
Sbjct: 186  STNILWLGVELHLAPDDSLWLQTLQQAGVVLGLPLLACGDVHMHARSRKPLQDVVTAIRL 245

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
               V  +    + P+     RS +          LE T+E+A RCSF L       P+  
Sbjct: 246  GRTV-AECGFALQPNAERHLRSRLRLASLYPRVMLEATLELAGRCSFSLDEIRYHYPQES 304

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                    +     L      G   R  QG        +D   +L  EL +I   K+  Y
Sbjct: 305  VLPGMTATQT----LAWLTWDGAAGRYPQG------IPEDVHDQLHKELALIEDQKYEMY 354

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V D +++A+   I    GRGS A S   Y L IT +DP   +LLFERF++ +R   P
Sbjct: 355  FLTVHDIVRYARSVGIL-CQGRGSAANSAVCYCLGITAVDPENNNLLFERFISKERSEPP 413

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF   RR+EVI+Y+  KYG +R A        ++++ALRDVG+ L +P   +D L 
Sbjct: 414  DIDVDFEHARREEVIQYIYGKYGRDRAALTAVVSCWRSRSALRDVGKVLGLPADLIDALA 473

Query: 477  KLIPNDPAH----PVSLQAIADDSRFREARLADPSVDR---------------------- 510
            K       H      +    AD +   +A  A P                          
Sbjct: 474  KGQYWFSEHAQAQAQTHAEAADSAEEDQAPEALPEDWVQRKLQEAEVLASEMNCAVGAHR 533

Query: 511  ---LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
                +E++ +L    RH S H  G V+ +  L++LVP+     +   V Q++   ++  G
Sbjct: 534  LRLWIELAWQLRDSPRHLSQHVGGFVLTEGKLTRLVPVEPATMAKRSVIQWDKDDLDVVG 593

Query: 568  LIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K D L L  LT+L+ +L+     RG    L  IP +D  TY ++    T+G FQ+ES 
Sbjct: 594  LLKVDVLALGMLTMLRNALNERARWRGEPWGLHQIPQEDAATYEMICQADTVGTFQIESR 653

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-----NRKNGKEKIVSIHPLIDPM 681
                 L  +QP    D++  V++ RPGPI   +V+       R   K  +    P +   
Sbjct: 654  AQMSMLPRLQPRTFYDLVVEVAIVRPGPIQGGMVHPYLLARERARRKLPLKLEKPELANA 713

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNG 740
            LK T GV I+QEQVMQIA   + +S  +AD LRR+M     K  + K +   I G    G
Sbjct: 714  LKRTLGVPIFQEQVMQIAMDAAKFSAGKADELRRSMAAWKRKGGVHKFERPLIDGMVARG 773

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
                 A  IF  +  F +YGF +SHA ++A+++Y +AW+K H P  FL A +  +     
Sbjct: 774  YKLEFAQAIFAQMLGFGEYGFPESHAYSFALLAYASAWLKRHEPAIFLQALLNAQPMGFY 833

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------------DNRIYYSLAAIKGVGTT 848
               +  QDAR+  ++++P  V        +                +   L  +  +G  
Sbjct: 834  SPSQLVQDARRHGVRVLPVDVCHSHWHCTLEAPLQAMRGVAQPQPAVRLGLNRVARLGKA 893

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I   +A  P+  + D   R    +L++  +E+L  A AL      R Q +      
Sbjct: 894  AALRIEGEAAQAPWKDVSDLAMRA---RLDKADMEALAAADALRSLAGHRRQQMWD---- 946

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                            ++          +  LE             +    G     HPL
Sbjct: 947  -----------AAAQASLPPIFAQAAIHEPGLE-LPQAAEGEEIMFDYAATGLSLRRHPL 994

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             + +P L + G+K   E    + G  +R   +V  +Q+  T  G+   ++T  +      
Sbjct: 995  ALLRPRLARHGLKTAAELRHMLPGQKVRACGIVTVRQRPPTANGTL--FITLEDETGVIN 1052

Query: 1029 ANFF 1032
               +
Sbjct: 1053 LVVW 1056


>gi|256847144|ref|ZP_05552590.1| DNA polymerase III [Lactobacillus coleohominis 101-4-CHN]
 gi|256715808|gb|EEU30783.1| DNA polymerase III [Lactobacillus coleohominis 101-4-CHN]
          Length = 1114

 Score =  559 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 319/1036 (30%), Positives = 529/1036 (51%), Gaps = 55/1036 (5%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
             + +  +P    L V S+YSLL+  +   +++         AIA+TD N L+ A++F   
Sbjct: 1    MRKMSVTP----LDVTSTYSLLQSTIRPRDLVKAAREQGYSAIALTDENVLYGAVDFYNA 56

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A  AGI+PIIG +L +   +                ++ ++    +GY  L++L ++   
Sbjct: 57   AQQAGIRPIIGLKLQLTFAE----------LDERKTTVTVIEKNQQGYTELMQLSTQ--- 103

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
              Q      + +  + +      I++    +         +     +K L  F    GD 
Sbjct: 104  --QMTSKAELTVQDVVKQIDNCAIIIKPTMA-----ILTAHRDPTIQKLLSWFGNQPGD- 155

Query: 182  LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            +++ +  +   D      +  L+  + L L+A     +L    Y    VL A+     + 
Sbjct: 156  IFMGI--NLVLDPTERQVLKDLSLQNGLKLIADEPVEYLEANQYFPTQVLRAIGDGRQIE 213

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                       +    ++ +   +     L + VE                   + +   
Sbjct: 214  SPLSTAHNTGQHYLRNAQNL-TVAYERAGLADAVENNEVLVQKSSFKINFQKPVLPEFAV 272

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                     LR   + GL+ R     +A     + YR RL+ EL VI +M F  YFLIV 
Sbjct: 273  PEGVNTAQYLRQLCIIGLKKRH----LAPNTTIKQYRDRLERELTVIHQMGFDDYFLIVW 328

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +A +  I  GPGRGS AGS+ AYAL ITD+DPL + LLFERFLNP+R  MPD D+D
Sbjct: 329  DIMAFAHRKQITTGPGRGSAAGSLVAYALAITDVDPLEYGLLFERFLNPERAQMPDIDLD 388

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
               +RR EV+ YV  +YGHERVAQIITFG+L A+  +RDVGR   +P  QV+++   +  
Sbjct: 389  IPDNRRQEVLEYVHQRYGHERVAQIITFGTLAARQVVRDVGRVFGVPKYQVEQIIDTLRV 448

Query: 482  DPAHP--VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
               H      +AI      R     DP    ++E+++KLEGL RH STHAAG+V+   PL
Sbjct: 449  LSRHRSVTLAEAIQQSQPLRNLMTDDPINKLVIEVARKLEGLPRHYSTHAAGVVLSATPL 508

Query: 540  SQLVPMYRDVRS-DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
             ++VP+        L +TQF  + +E  GL+K DFLGL+ L+++ ++L  + Q     D+
Sbjct: 509  KEIVPLQPGNDEAGLLMTQFPKEIVESVGLLKMDFLGLRNLSIMDRALAIIHQTTPGFDI 568

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P +DH+T  L     T GIFQ ES+G+RQ L+ + PD  EDI+A+ +LYRPGP+ NI
Sbjct: 569  TKVPLNDHKTIQLFKQGLTDGIFQFESTGIRQTLQQLAPDNFEDIVAVNALYRPGPMQNI 628

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +  RK+G+E I      + P+L  T G+++YQEQVMQ+A  ++G+SL +AD+LRRAM 
Sbjct: 629  PHFIARKHGQEPIQLPDQSLQPILGPTYGILVYQEQVMQVASKMAGFSLGQADLLRRAMS 688

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK +  M+  ++RFISGA KNG ++ IA  +F  + +FA+YGFN+SHA AY+ ++Y+ A+
Sbjct: 689  KKKQATMESMRQRFISGAVKNGYNQPIAEQVFNYIDQFANYGFNRSHAVAYSKMAYEMAY 748

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K H+   F  A + +E +  +K++    DA++F ++I+ P++N   +++ + + +I   
Sbjct: 749  LKCHFTTAFFTALLAIEPNM-DKVRLHLADAQRFGVRIIGPNINQSQMEYSLQNGQIVMG 807

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
             + IKG+     + I+E      F +L DF  R+  K     ++E L++AGA D  GY+R
Sbjct: 808  FSMIKGMRRDFIQAIIEERKAGQFKNLPDFVQRLGEKWQKAALIEPLIYAGAFDQLGYNR 867

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             ++++ L  +    +             F+ +      +  +++      + R + EQ  
Sbjct: 868  AEMIEGLSGVFAGNE-------------FSFQSADL--QPIMKRRQEYPLTYRLQKEQEY 912

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG-SRIGW 1017
            LG Y SGHP+  Y+ + ++   +   +      G++++L  ++   +Q  T+K    + +
Sbjct: 913  LGMYLSGHPVTQYQRVRQQQHTQRIMDLKP---GSSVKLLVLLNQIRQINTKKTHQPMAF 969

Query: 1018 VTFSEPAKEYEANFFP 1033
             T S+     +   FP
Sbjct: 970  ATASDETGSMDITIFP 985


>gi|260469704|ref|ZP_05813865.1| DNA polymerase III, alpha subunit [Mesorhizobium opportunistum
            WSM2075]
 gi|259028524|gb|EEW29839.1| DNA polymerase III, alpha subunit [Mesorhizobium opportunistum
            WSM2075]
          Length = 1118

 Score =  559 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 250/1059 (23%), Positives = 439/1059 (41%), Gaps = 91/1059 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +    + S++S L GA     ++         AI + D N +   +   Q+A    +   
Sbjct: 9    YAEFGIQSNFSFLRGASKPEELVVAAKLLGFSAIGLADRNTVAGVVRAWQQAKVEKLSYH 68

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ-GKQSV 129
             GC+L                     P I+      +G+  L  ++++  L D+  K + 
Sbjct: 69   PGCRLVFCDG---------------TPDILAYPRNRKGWGHLCRMLTQANLRDETEKGAT 113

Query: 130  RICLSWLQEIGTEG-LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
             +  S L E G    L +L    +G          ++ +   +   K  FG  L + +  
Sbjct: 114  LLQRSDLLEWGDLMSLAVLPDPMAG----------AEDSLALIRQLKDRFGRALRLGVSP 163

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQKDRP 246
             + G DR+R  Q    A +  +PL+ATN+ L+ + E     DVL A+  +T       + 
Sbjct: 164  DYAGNDRFRIEQAAAFAESAGIPLMATNDVLYHTAERRPLQDVLTAIRLNTPAAEVGLQL 223

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +LK   EM  +F   P+AL  T+  A   +F L       P    +        
Sbjct: 224  TANAERHLKPPMEMARLFRRHPQALTETLRFAEELTFSLSDLQYNYPDEPTESGLG---- 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + EL   A  G   R   G  A         +R+  EL +I R+ ++ YFL V D +++
Sbjct: 280  PQAELERLAREGAARRYPAGVPAS------VIKRIGEELALIERLNYARYFLTVHDIVKY 333

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I    GRGS A S+  + + IT++ P +   LFERF++ +R   PD D+DF  ++
Sbjct: 334  ARSQDIL-CQGRGSAANSIVCFCIGITEVGPDKIDTLFERFISEERNEPPDIDVDFEHEK 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+ VI+Y+  KY  +R A      S + ++ALR+V +A+ +       L   I       
Sbjct: 393  RETVIQYIYEKYSSKRTALAAAVISYRGRSALREVSKAMGLSEDVRASLSGSIWGWSTSE 452

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +       ++R       DP    ++E + ++ G  RH S H  G VI    L ++VP+ 
Sbjct: 453  LG----EKEARAGGLDQTDPVSRHVMERANEIMGFPRHLSQHVGGFVITRDRLDEIVPIV 508

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--------VKVDL 598
            +    +  + +++   ++   ++K D L L  LT LQ++   L +              L
Sbjct: 509  KTAMDERKMVEWDKDDLDAVKILKVDILALGMLTCLQRAFTLLTEHYPKARDPYGQPYVL 568

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P +D + Y ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   
Sbjct: 569  ATLPPEDKQVYKMICRADTIGVFQIESRAQMSMLPRLRPQNFYDLVIEVAIVRPGPIQGD 628

Query: 659  VVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V+    R+ GKE+     P +  +L +T GV ++QEQ M+IA +  G+   EAD LRRA
Sbjct: 629  MVHPYLRRRQGKEEAEYPKPELKEILGKTLGVPLFQEQAMKIAIVAGGFRPGEADELRRA 688

Query: 717  MGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M    +   +   ++R I G    G +K  A   F+ +  F +YGF +SHAA++A++ Y 
Sbjct: 689  MATFKRTGTIGNYRQRMIDGMMGKGYTKDFAERCFKQIEGFGEYGFPESHAASFALLVYA 748

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD--- 832
            + W KT YP  F AA +  +     +  +  +DAR   + I    VN    D  + +   
Sbjct: 749  SCWFKTFYPDVFCAAILNSQPMGFYQPAQLVRDARDHGVDIREVDVNFSTWDCTLEEAPF 808

Query: 833  -------------------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                               + +      IKG+        +    D  + S+ D   R  
Sbjct: 809  DPARILPRHAEMRGVIETAHAVRLGFRQIKGLSKERMEQFVTRRGDG-YLSVRDVWLR-- 865

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
               L+   +E L  A A    G  R   L ++  +       +     +   +F      
Sbjct: 866  -SGLDVDEIERLAQADAFRSLGLDRRDALWAVRAL-------DGKSAAEKLPLFDQPALR 917

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
              +     K           ++ R LG     HP+   +  L + G+       +   G 
Sbjct: 918  LRELEPETKLPKMPLGEHVIHDYRSLGLSLKAHPVAFLRGRLDRAGVTPNANLSSVRDGR 977

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + +A +V+ +Q+    KG+   ++T  +        F+
Sbjct: 978  RVSVAGLVLVRQRPG--KGNA-IFLTLEDDKAVANVIFW 1013


>gi|90961842|ref|YP_535758.1| DNA polymerase III alpha subunit [Lactobacillus salivarius UCC118]
 gi|90821036|gb|ABD99675.1| DNA polymerase III alpha subunit [Lactobacillus salivarius UCC118]
          Length = 1097

 Score =  559 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 306/1025 (29%), Positives = 501/1025 (48%), Gaps = 47/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV SSYSLL+  L ++  +         A+ +TD N+++  L+F  +   AGI+PI
Sbjct: 2    YAPLQVLSSYSLLQSPLRISEYVKLGKELGYSALVLTDINSMYGVLDFYHECVKAGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L              ++        + +   + GYQ L+ + S+            
Sbjct: 62   IGITL--------------QSGDDEY---IFIAKNSNGYQNLMNISSKRLTAVDENYKNI 104

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              L+ + E   + +++L    S         +     +  +        + +Y  +    
Sbjct: 105  FKLTDITEYLQDVIVIL--NPSYLTVNDIISDQVTELQTLVSA-----AETIYYGV---N 154

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              DR   +  +  A   +L  +      +L E DY +  VL A+     V+     +   
Sbjct: 155  PNDRDAINNDLMAAEKLQLETILLTPVKYLKERDYFSTKVLQAIGTGENVNPNWNFKNDG 214

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            ++              L  A +N + +  +C+  L      LP F E          E  
Sbjct: 215  NYLHTPEEYGRLGTDYLSNAYQNAINVIAQCNLTLNFPKTQLPHFKETNG----LSSEAF 270

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL  R+A+  I      ++Y+ RLD+EL+VI RM F  YFLIV D   +A +N
Sbjct: 271  LRKLCQEGLAKRIAEENIKNQ---EEYQNRLDYELSVIHRMGFDDYFLIVWDVTNFAHEN 327

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            NI  GPGRGS AGS+ +Y L ITDIDP+++ L+FERFLN +R  MPD D+D    +RD +
Sbjct: 328  NILTGPGRGSAAGSLVSYTLYITDIDPIKYDLIFERFLNEERAQMPDIDLDIPDIKRDTI 387

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I Y+  KYG + +AQIITFG+L+ K  LRDV R   +   + D   K IP +    +   
Sbjct: 388  IEYLHQKYGQQHMAQIITFGTLKTKQVLRDVARVFDLKTYEADAWSKAIPKEYGITLKEA 447

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
              A     +     +     L E +  LEGL RH STHAAGI++ D  L   VP+     
Sbjct: 448  -YASSQSLKNLVADNSKNRLLFETAIALEGLPRHYSTHAAGIILSDDDLVDHVPVQ-IGG 505

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
              + ++QF    +E+ GL+K DFLGL+ L++L+ ++  + +   +  D+  I  DD ET 
Sbjct: 506  DGILMSQFAKNQVEEVGLLKMDFLGLRNLSILENTITLIKKGYHIDFDIRKINLDDPETL 565

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             +     T GIFQ ES+G+R  L  ++P   ED+ A+ +LYRPGPI NI  +  RK+G+ 
Sbjct: 566  KIYQNAETSGIFQFESAGIRGVLTKLKPTSFEDVAAVNALYRPGPIQNIDEFIARKHGER 625

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I      ++ +LK+T G+++YQEQVMQ+A  + G++L +AD LRRAM KK  + + + +
Sbjct: 626  PITYPSKELEGILKQTYGIMVYQEQVMQVASTMGGFTLGQADSLRRAMSKKKHDIISRME 685

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI+GA K G +  +A  ++  + +F DYGFN+SHA AY+ +S++ A++K HYP  F A
Sbjct: 686  VMFINGAMKKGYTHEVAKKVYAYIMEFGDYGFNRSHAVAYSKMSFELAYIKAHYPAAFFA 745

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +   + N  K K +  +A+   +++  P +N     + + +  IY+ L+ IK +    
Sbjct: 746  ALLNSVIGNPRKTKDYVLEAKNKGVKVHHPDINISQSLYILRNGGIYFGLSCIKSLRKNF 805

Query: 850  ARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++       F ++EDF  R+D + L R ++E L+++G  D FG SR +LL  L  +
Sbjct: 806  LQDILQERKRSGIFKNMEDFLQRIDKRYLKRELIEILIYSGVFDTFGQSRKELLAMLPRL 865

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                +    N       +F+      +    +      ++    E E   LG Y SGHP+
Sbjct: 866  LSNIELSGNNVE-----LFSILAPKKTTVEKI----EISNDELLEKENYYLGAYLSGHPV 916

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            + Y  ++         +   + +   + +   +   +  +T+ GS++ +VT ++     +
Sbjct: 917  EKYAELIYLTNSTRVSQINESNKDKYVSMILQIKVIKIIRTKNGSQMAFVTAADQTGNMD 976

Query: 1029 ANFFP 1033
              FFP
Sbjct: 977  LTFFP 981


>gi|254443842|ref|ZP_05057318.1| DNA polymerase III, alpha subunit subfamily, putative
            [Verrucomicrobiae bacterium DG1235]
 gi|198258150|gb|EDY82458.1| DNA polymerase III, alpha subunit subfamily, putative
            [Verrucomicrobiae bacterium DG1235]
          Length = 1088

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 271/1087 (24%), Positives = 470/1087 (43%), Gaps = 117/1087 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+V L   S++S L GA   + + +  A     A+A+ D    + +  F       G++ 
Sbjct: 3    SYVELHGRSAFSFLRGASQPDELAEACADRGVAAMAVCDRGGFYGSARFHAACREMGVKG 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC+L +                     + ++V T  GYQ L  +++ M+L    K   
Sbjct: 63   IVGCELPMVDGSA----------------LPVVVKTRAGYQSLCRILTDMHL-SAAKGEG 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ- 187
            R+    L    TEGL+ LTG   G + R +          R+   K LFG   ++V LQ 
Sbjct: 106  RLAWGDLV-GRTEGLVALTGDEDGVLRRYWDLGDRDGMRDRVAELKGLFGAGNVFVELQR 164

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRP 246
            RH   +    S +  LA    + +VATN   +         DV   +    ++       
Sbjct: 165  RHERGEERLVSGLRDLAEAEGVSMVATNGVSYARPAGRALMDVFTCLREKVSLDGAGALL 224

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  ++K  +EM  +F D+PEA++NT+ IA +  F L+      P +     + +   
Sbjct: 225  SRNGQRFVKAPAEMRHLFRDIPEAVDNTLRIAEQVEFGLENLGYEFPSYGVPRGESM--- 281

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L+    AG   R        G   +  R++++ EL VIA++ FSGYFLIV D + +
Sbjct: 282  -DTFLKKVVWAGARKRFK------GEPNEKTRRQMEHELAVIAKLGFSGYFLIVWDLVNF 334

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ-D 425
             + N I    GRGS A SV  + L IT +DP+   LLFERFLN +R S PD DID    +
Sbjct: 335  CRDNGIM-AQGRGSAANSVVCFCLEITPVDPVGAGLLFERFLNEERRSWPDIDIDLPSGE 393

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+ VI+ V  +YG    A      + + K+A R++G+ L      + R   L      +
Sbjct: 394  RREMVIQEVYRRYGRHGAAMTANVITYRRKSAAREIGKVLGFDEEVLGRFSSLFGGH--N 451

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                  +AD           P    L ++ +++ GL RH   H+ G+VI    L  +VP+
Sbjct: 452  YEHGVELADQLEKSGVTKEHPRARALAKLCEQVLGLPRHLGQHSGGMVICQGALDTVVPL 511

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                     V Q++    E  G++K D LGL  + ++Q +++ L  +GV ++L+ IP DD
Sbjct: 512  EPASMPGRSVCQWDKNDCEDLGIVKVDLLGLGMMAVMQDTIETLNTKGVDIELATIPKDD 571

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
              T+ ++    T+G+FQ+ES      L  M+P    D++  V + RPGPI   +V+    
Sbjct: 572  VVTFEMMQRADTVGVFQIESRAQIATLPRMKPKTFYDVVVEVGIIRPGPIQGKMVHPYLE 631

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK--I 721
            R+    KI  I P ++ +L+ T GV ++QEQ++++A +++ +S +EA+ LRRA+      
Sbjct: 632  RREDPSKIEYIDPRLEEVLERTLGVPLFQEQILKVAMVMADFSGAEAEELRRAVSTFSTN 691

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            ++ M+K   + +    + G+ +T   ++   ++ FA YGF +SHA ++ +++Y + ++K 
Sbjct: 692  EKRMNKVLGKLVGAMRERGVEETKVEDVVRAVSSFAHYGFPESHAISFGLLAYASTYLKC 751

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF------------- 828
            HY  EF    +  +           QDA++  I+++P  V     +              
Sbjct: 752  HYAAEFFVGLLNNQPMGFYAPATLIQDAKRMGIRVLPVCVVESRWECGAAGAAWEKVEGG 811

Query: 829  -------KVGD-----------------------------------NRIYYSLAAIKGVG 846
                   +V                                       I   L  +KG+ 
Sbjct: 812  GMKDEVDRVEGVMATKRHEEARRGDGDLMATKRHEKARKCEGGDRVGEIRLGLVMVKGLS 871

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                + ++       F SL+DF  R    + N+  L  L   GAL+CF   R   L  ++
Sbjct: 872  RERGKALVAERERGAFRSLKDFRFRT---RFNKEELRMLASIGALNCFCGDRRSALWEVE 928

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             +               +++FA  +    ++  L    V     R + +   +G     H
Sbjct: 929  TLLDE------------DDLFAFVE----EEEALSPLEVMTHLERLQADYAGVGVTVGKH 972

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P+   +  L   G++   +   T  G+ +++A  V+ +Q+  T KG    +++  +    
Sbjct: 973  PMASLRGQL--GGVRRACDLDTTSNGSRVKVAGQVICRQRPGTAKG--FVFISLEDETGI 1028

Query: 1027 YEANFFP 1033
                  P
Sbjct: 1029 SNVIVVP 1035


>gi|227890867|ref|ZP_04008672.1| DNA polymerase III alpha subunit [Lactobacillus salivarius ATCC
            11741]
 gi|227867276|gb|EEJ74697.1| DNA polymerase III alpha subunit [Lactobacillus salivarius ATCC
            11741]
          Length = 1109

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 305/1025 (29%), Positives = 501/1025 (48%), Gaps = 47/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV SSYSLL+  L ++  +         A+ +TD N+++  L+F  +   AGI+PI
Sbjct: 14   YAPLQVLSSYSLLQSPLRISEYVKLGKELGYSALVLTDINSMYGVLDFYHECVKAGIKPI 73

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L     +                  + +   + GYQ L+ + S+            
Sbjct: 74   IGITLQSSDDE-----------------YIFIAKNSNGYQNLMNISSKRLTAVDENYKNI 116

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              L+ + E   + +++L    S         +     +  +        + +Y  +    
Sbjct: 117  FKLTDITEYLQDVIVVL--NPSYLTVNDIISDQVTELQTLVSA-----AETIYYGV---N 166

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              DR   +  +  A   +L  +      +L E DY +  VL A+     V+     +   
Sbjct: 167  PNDRDAINNDLMAAEKLQLETILLTPVKYLKERDYFSTKVLQAIGTGENVNPNWNFKNDG 226

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            ++              L  A +N + +  +C+  L      LP F E          E+ 
Sbjct: 227  NYLHTPEEYERLGTDYLSSAYQNAINVIAQCNLTLNFPKTQLPHFKETNG----LNSEDF 282

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL  R+A+  I      ++Y+ RLD+EL+VI RM F  YFLIV D   +A +N
Sbjct: 283  LRKLCQEGLAKRIAEENIKNQ---EEYQNRLDYELSVIHRMGFDDYFLIVWDVTNFAHEN 339

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            NI  GPGRGS AGS+ +Y L ITDIDP+++ L+FERFLN +R  MPD D+D    +RD +
Sbjct: 340  NILTGPGRGSAAGSLVSYTLYITDIDPIKYDLIFERFLNEERAQMPDIDLDIPDIKRDTI 399

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I Y+  KYG + +AQIITFG+L+ K  LRDV R   +   + D   K IP +    +   
Sbjct: 400  IEYLHQKYGQQHMAQIITFGTLKTKQVLRDVARVFDLKTYEADAWSKAIPKEYGITLKEA 459

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
              A     +     +     L E +  LEGL RH STHAAGI++ D  L   VP+     
Sbjct: 460  -YASSQSLKNLVADNSKNRLLFETAIALEGLPRHYSTHAAGIILSDDDLVDHVPVQ-IGG 517

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
              + ++QF    +E+ GL+K DFLGL+ L++L+ ++  + +   +  D+  I  DD ET 
Sbjct: 518  DGILMSQFAKNQVEEVGLLKMDFLGLRNLSILENTITLIKKGYHIDFDIRKINLDDPETL 577

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             +     T GIFQ ES+G+R  L  ++P   ED+ A+ +LYRPGPI NI  +  RK+G+ 
Sbjct: 578  KIYQNAETSGIFQFESAGIRGVLTKLKPTSFEDVAAVNALYRPGPIQNIDEFIARKHGER 637

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I      ++ +LK+T G+++YQEQVMQ+A  + G++L +AD LRRAM KK  + + + +
Sbjct: 638  PITYPSKELEGILKQTYGIMVYQEQVMQVASTMGGFTLGQADSLRRAMSKKKHDIISRME 697

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI+GA K G +  +A  ++  + +F DYGFN+SHA AY+ +S++ A++K HYP  F A
Sbjct: 698  VMFINGAMKKGYTHEVAKKVYAYIMEFGDYGFNRSHAVAYSKMSFELAYIKAHYPAAFFA 757

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +   + N  K K +  +A+   +++  P +N     + + +  IY+ L+ IK +    
Sbjct: 758  ALLNSVIGNPRKTKDYVLEAKNKGVKVHHPDINISQSLYILRNGEIYFGLSCIKSLRKNF 817

Query: 850  ARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++       F ++EDF  R++ + L R ++E L+++G  D FG SR +LL  L  +
Sbjct: 818  LQDILQERKRSGIFKNMEDFLQRINKRYLKRELIEILIYSGVFDTFGQSRKELLAMLPRL 877

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                +    N       +F+      +    +      ++    E E   LG Y SGHP+
Sbjct: 878  LSNIELSGNNVE-----LFSILAPKKTTVEKI----EISNDELLEKENYYLGAYLSGHPV 928

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            + Y  ++         +   + +   + +   +   +  +T+ GS++ +VT ++     +
Sbjct: 929  EKYVELIYLTNSTRVSQINESNKDKYVSMILQIKVIKIIRTKNGSQMAFVTAADQTGNMD 988

Query: 1029 ANFFP 1033
              FFP
Sbjct: 989  LTFFP 993


>gi|256372382|ref|YP_003110206.1| DNA polymerase III, alpha subunit [Acidimicrobium ferrooxidans DSM
            10331]
 gi|256008966|gb|ACU54533.1| DNA polymerase III, alpha subunit [Acidimicrobium ferrooxidans DSM
            10331]
          Length = 1053

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 278/1032 (26%), Positives = 459/1032 (44%), Gaps = 52/1032 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L  HSS+S L+G +   ++++  A     A+A+TD N L+    F + A   G+ P++
Sbjct: 14   VELHAHSSFSFLDGVVDPEDLVEAAAVAGYRALALTDHNGLYGVPRFLEAARRVGVVPLV 73

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +L +        T +     P    +V+L ++ EGY+ L  +++  ++    K    +
Sbjct: 74   GAELTLA-----TTTPRAGATDPEGEHLVVLAASPEGYRALSRVIATGHMRTGEKGRFDL 128

Query: 132  CLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
             +  L E   + G  +L G    P  RA        AE+ + +  + FGD L + L    
Sbjct: 129  TIDDLAEAAPSGGWFVLAGWRKSPPGRALAHAGPSAAERSVRSLWERFGDALVLELVDTL 188

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               D  R   +  +   H LP+VAT     +      A  V  A+     + + D     
Sbjct: 189  DPADTVRNDVLAAIGAHHGLPVVATQAVHAIDVRTQRAAVVAAAIRARRTLGELDGYLPG 248

Query: 250  PDHYLKNRSEMVS-IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                +   +  +   F   P  ++  VE+A RC+F + + AP LPR +     D    ++
Sbjct: 249  AGPPVLRPARALRARFGRYPGVVDAAVELAARCAFNVDLVAPGLPRDVVAMGVD----DD 304

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L          R                +++D EL+VI  + F+GYFL+V D + +  
Sbjct: 305  EALVALVAERAPRRY---GPRAAPRIPGAWEQIDHELDVIRSLGFAGYFLVVTDIVDFCV 361

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I    GRGS A S   YAL IT++DP+   LLFERFL+P+R   PD D+D    RR+
Sbjct: 362  REGIY-CQGRGSAANSAVCYALGITNVDPVALGLLFERFLSPERDGPPDIDVDIESRRRE 420

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YV  +YG  R AQ+ +  + +A++ALRD  R   +  + +    K + +  +   S
Sbjct: 421  EVIQYVYTRYGRARAAQVASVITYRARSALRDSARVFGVDQATLAAWSKGVEHRGSVARS 480

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            L       R    R        + E++  LEG  RH   H  G+V+ DRP+  + P    
Sbjct: 481  LA-----ERDGAGRPLLEVPAVIAEVASVLEGAPRHLGVHVGGMVLCDRPIVDVCPTEWA 535

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
                  V Q++     + GL+KFD LGL  L  + + +D + +R            D   
Sbjct: 536  RAEGRSVLQWDKDDCARMGLVKFDLLGLGMLEAIHEMVDLVRERVGVEVDIATLEQDPAV 595

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKN 666
            Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y  R+ 
Sbjct: 596  YEMLARADSVGVFQVESRAQMATLPRLRPSRFYDLVVEVALIRPGPIQGGSVHPYLRRRA 655

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEM 725
            G+E +V  HPL +  L +T GV ++QEQ+MQ+A  ++G+S +EAD LR+AM  K+    M
Sbjct: 656  GEEPVVYPHPLAERALAKTLGVPLFQEQLMQLAMDVAGFSAAEADELRQAMGAKRSSARM 715

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             +  +R ++G +  G+       +   L  FA++GF +SHAA++A + Y +AW K HYP 
Sbjct: 716  ARLHDRLMAGMAARGVDPAAREQVVTQLEAFANFGFPESHAASFAWLVYVSAWFKVHYPA 775

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNRIYYSLAA 841
             F A  +  +       +   +DAR+  + ++ P V        V    G+  +   L A
Sbjct: 776  AFYAGLLRAQPMGFWSPQTLVRDARRHGVGVLGPDVTRSSARADVVVRDGEQLLALGLDA 835

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            ++G+   TA  I+      PFDSL D   RV+   L    +  L  AGAL     S  + 
Sbjct: 836  VRGIAAATASSIVAMR---PFDSLLDLVQRVE---LTPEQIRRLAGAGALRALEPSGQRA 889

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            +   D +          R ++  +                 F   +   R   E   LG 
Sbjct: 890  IWFADEL---------ARRHRMLDGLGFPSSE-------PVFPALDPRERAALEVDALGL 933

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
                HP+   +  L  +G+   ++  +   G  +R+A  V  +Q+  T +G  I ++   
Sbjct: 934  LVGDHPMAFVRERLSTLGVVRADQLASQRHGRRVRVAGTVTHRQRPGTARG--IVFMNLE 991

Query: 1022 EPAKEYEANFFP 1033
            +          P
Sbjct: 992  DETGLVNVLVKP 1003


>gi|254786885|ref|YP_003074314.1| DNA polymerase III subunit alpha [Teredinibacter turnerae T7901]
 gi|259645265|sp|C5BNE0|DNAE2_TERTT RecName: Full=Error-prone DNA polymerase
 gi|237683874|gb|ACR11138.1| putative DNA polymerase III, alpha subunit [Teredinibacter turnerae
            T7901]
          Length = 1033

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 265/1035 (25%), Positives = 444/1035 (42%), Gaps = 78/1035 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++ HL   S+++ L GA     ++++       AIA+TD  +L  A++    A   GI+ 
Sbjct: 2    AYAHLFTFSNFTFLRGASHPAEMVEQAYRLGYDAIALTDECSLAGAVKAHVMAEECGIKL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G    +                     ++ L      Y  L   ++        K   
Sbjct: 62   IVGSYFKLSNN----------------CELIALAPDRAAYAELSGFITLARRRAD-KGEY 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QR 188
               +  L+      LI+    ++               E     F   F  RL++ +  +
Sbjct: 105  TAHMDDLRFRLQTCLIIWLPTAN------------TATEDNARIFSAAFKQRLWLGVGHQ 152

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              G ++    Q   LA T++LP+VA++ +L  S E     DVL A+ H+T VSQ      
Sbjct: 153  LAGGEQRLFQQWQNLAATYQLPMVASHLALMHSAERKPLQDVLTAINHNTSVSQLGTRLQ 212

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +        +     +   P  ++ T+ IA RC+F L       P+ +  +         
Sbjct: 213  SNGENYLK-AIDEVFYLYPPGLIKQTLLIAERCNFSLNELKYQYPQELVPKG----LSPI 267

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR    +G   R   G  A+          L  EL +I  + +  YFL V D + +A+
Sbjct: 268  AHLRALVDSGKARRWPGGVPAQAE------AILAKELALIEELHYEYYFLTVYDIVAFAR 321

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            + NI    GRGS A SV  Y L IT+I P + ++LFERF++ +R   PD D+DF   RR+
Sbjct: 322  QQNIL-CQGRGSAANSVVCYCLFITEIAPGQINVLFERFISKERDEPPDIDVDFEHQRRE 380

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            +VI+Y+  KY  +R A   T  S ++++A+RDVG+AL +  + VD L K +         
Sbjct: 381  DVIQYIYTKYSRQRAALAATVISYRSRSAIRDVGKALGLDPALVDHLAKSLAWWDRTGDL 440

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            ++ I         +     V +   + Q++ G  RH S H  G VI    +S LVP+   
Sbjct: 441  VKRI----EAAGVQTERQLVQQFFALVQQIIGFPRHLSQHVGGFVITQDKVSDLVPVENA 496

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHE 607
                  V Q++ + +E  GL+K D L L  LT L+K+L  + +       L+ IP +D  
Sbjct: 497  SMPGRTVIQWDKEDLEAMGLLKVDILALGMLTALRKTLAMVNRYEPAIASLADIPPEDPH 556

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665
            TY +L    T+G+FQ+ES      L  ++P    D++  +++ RPGPI   +V+    R+
Sbjct: 557  TYDMLCAADTVGVFQIESRAQMSMLPRLRPRTFYDLVIEIAIVRPGPIQGDMVHPYLRRR 616

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G E +    P I  +LK T GV I+QEQ +++A + +G+S  EAD LRRAM    K   
Sbjct: 617  DGLEPVSYQSPDIADVLKPTLGVPIFQEQAIRLAMVAAGFSGGEADRLRRAMASWGKNGN 676

Query: 726  -DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
              + +E FI G   NG     A  +FE +  F  YGF +SH+A++A++ Y ++W+K H+P
Sbjct: 677  LLQFEETFIQGMLNNGYELDFAHRLFEQIKGFGGYGFPESHSASFAILCYASSWLKCHHP 736

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-------DNRIYY 837
              F  A +  +        +  QDAR+  I ++P  VN    +  +           I  
Sbjct: 737  AAFYCALLNSQPMGFYSPSQLIQDARRHGIPVLPVDVNHSEAESALEPANSYRTPWAIRL 796

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
                IKG+ +  A+ I +  A +P+  ++    R     L+R  L+ L  A AL     +
Sbjct: 797  GFTRIKGLDSEAAQRIADNRAQQPYRDIQQLARR---SGLSRADLQKLAAADALHSLAGN 853

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R        ++                 +F  E       +T       +      ++  
Sbjct: 854  RHLAHWQAASV------------EAQAGLFDDEPPPGDALLTAPP----SLEKDLTSDYN 897

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
              G     HP+ + +        K   +      G  +++A +V  +Q+  T KG+   +
Sbjct: 898  TTGLSLRVHPMGILRQEYPFSRCKQQRQLSGLSHGRFVQVAGLVTGRQRPGTAKGTL--F 955

Query: 1018 VTFSEPAKEYEANFF 1032
            +T  +         +
Sbjct: 956  LTLEDETGNINVVVW 970


>gi|325925608|ref|ZP_08186993.1| DNA polymerase III, alpha subunit [Xanthomonas perforans 91-118]
 gi|325544008|gb|EGD15406.1| DNA polymerase III, alpha subunit [Xanthomonas perforans 91-118]
          Length = 1082

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 259/1047 (24%), Positives = 449/1047 (42%), Gaps = 88/1047 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + + A G++
Sbjct: 46   PAYAELHCLSDFSFLRGASSAEQLFVRAQHCGYSALAITDECSLAGIVRGLEASRATGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                      VLLV  A GY +L  L++        K +
Sbjct: 106  LIVGSEFALVDG----------------TRFVLLVENAHGYPQLCGLITTAR-RAASKGA 148

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+  + +Q    +         +  +   +   +   AE+     +++FG+R ++ ++ 
Sbjct: 149  YRLGRAEVQAQFRD--------VAPGVFALWLPGAQPQAEQGA-WLQQVFGERAFLAVEL 199

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D   R   +  LA    +  +A+ +       +    D L A+ H T+   +    
Sbjct: 200  HREQDDVARLQVLQALAQQLGMTALASGDVHMAQRRERIVQDTLTAIRH-TLPLAECGAH 258

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +  +     R+            L+ TVE+A+RC+F +       PR +  +        
Sbjct: 259  LFRNGERHLRTRRALGNIYPDGLLQATVELAQRCTFDISKLQYTYPRELVPQG----HTP 314

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR    AG+  R   G        +  R  ++ EL +IA +++  +FL V D +++A
Sbjct: 315  ASYLRQLTEAGMRERWPDGV------PKKIRDDIENELALIAELEYEAFFLTVQDVVRFA 368

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  +I    GRGS A S   YAL IT +DP +  LL  RFL+  R   PD D+DF  +RR
Sbjct: 369  RSKDIL-CQGRGSSANSAVCYALGITSVDPSKTRLLISRFLSKARNEPPDIDVDFEHERR 427

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L            
Sbjct: 428  EEVLQYVYAKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGETP 487

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              Q I +        LA+P ++++L ++  L    RH S H  G VI D PLS LVP+  
Sbjct: 488  MEQRIEE----AGFDLANPLINKILLVTDHLRDHPRHLSQHVGGFVISDEPLSLLVPVEN 543

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
               +D  + Q++   +E   L+K D L L  LT ++K+LD +   R     L+ +P +D 
Sbjct: 544  AAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRHRDYTLATLPDEDA 603

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+   + 
Sbjct: 604  ATYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGDMVHPYLQR 663

Query: 667  GKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-E 723
             K+K  I      ++ +L  T G+ ++QEQVM++  + +GY   EAD LRR+M    +  
Sbjct: 664  RKDKSLINYPSEGVEQILGPTLGIPLFQEQVMELV-IHAGYDPDEADKLRRSMAAWRRGG 722

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +M+  + R  +     G + +    IFE +  F  YGF +SHAA++A + Y + W+K H 
Sbjct: 723  DMESHRVRIRALMEGKGYASSFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRHE 782

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQD-----ARQFNIQIMPPSVNTPCVDFKVGDN----- 833
            P  F    +  +        +  QD       +  ++++P  V     D  +        
Sbjct: 783  PAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVLHSDWDNALVGGRPWRS 842

Query: 834  --------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                     I   +  + G+    A+ I+ A   + F  + D C R     L+ +   +L
Sbjct: 843  AVDPGEQPAIRLGMRQVAGLSQVVAQRIVAARTQRAFADIGDLCLRA---ALDEKARLAL 899

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              AGAL     +R     ++  ++     +                   S +     F  
Sbjct: 900  AEAGALHGMVGNRNAARWAMAGVEARRPLL-----------------PGSPEERPVAFEA 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
              +      + R +G     HP+ + +P +R+  I G  E      G+ + +A +V  +Q
Sbjct: 943  PRAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRELQGRRHGSGVHVAGLVTQRQ 1002

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  T KG+   +VT  +         +
Sbjct: 1003 RPATAKGT--IFVTLEDEQGMINVIVW 1027


>gi|255036108|ref|YP_003086729.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053]
 gi|254948864|gb|ACT93564.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053]
          Length = 1076

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 259/1034 (25%), Positives = 452/1034 (43%), Gaps = 68/1034 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV S++S L GA     ++++        IAITD N L   +     A   G + I
Sbjct: 3    YTELQVTSNFSFLRGASHPEELVEQAMHFGYTKIAITDRNTLAGIVRAHSAARGKGFEVI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
               +LD+                   PS++   +    Y RL  L+S      + K    
Sbjct: 63   PAARLDLIDG----------------PSLLAYPTDKPAYARLSALLSLGNRRTE-KGKCD 105

Query: 131  ICLSWLQEIGTEGL-IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
            +    + E   EG+  +       P+     F      E+ L  ++   G  LY+   R 
Sbjct: 106  LYRRDVYE-HAEGMKFVAVA----PVTLNASFEFEPGFERALREYRSELGSELYLAATRS 160

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPR 247
            +   D  +  ++ +++   ++PLVATN+  +   E  +  D++  V     +     R  
Sbjct: 161  YVESDVKKFFRLSEISKRLDVPLVATNDVHYHHPERRQLQDIVTCVREKCTIYNAGFRLH 220

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + YLK+++EM+ IF   P+A+  T EIA  C+F L     + P  I        +  
Sbjct: 221  QNAERYLKDQAEMLRIFRGYPDAIARTQEIAEACTFSLDTLQYVYPEEIT----GGDRSP 276

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + EL   A  G      +         +     ++ EL  +A M ++ YFL V D +++A
Sbjct: 277  QEELTYLAWKGARDFYGEPV------PEKVASAIEHELKFVAEMDYAAYFLTVYDIVRFA 330

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  I    GRGS A S   + L IT +DP +F LLFERF++  R   PD D+DF  +RR
Sbjct: 331  RERGIL-CQGRGSAANSTVCFCLGITSVDPTKFDLLFERFISSARNEPPDIDVDFEHERR 389

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KYG +R A + T   L  K A+RDV +A+ M    +++L   I        
Sbjct: 390  EEVIQYIYQKYGRDRSAIVATVTQLHQKGAVRDVAKAMGMSVDAINKLSSSIWEFTDEWF 449

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              + I+D    +    +DP + ++ +++++  G  R    H  G VI    ++ L P+  
Sbjct: 450  EGKRISD----QGFNASDPHLMKVADLTKQFMGFPRQLGQHTGGFVITQGKITDLCPIIN 505

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDH 606
                D    ++N   I+  G +K D L L  LT ++K  D L     K   L+ IP DD 
Sbjct: 506  ARMEDRTNIEWNKDDIDTLGFLKIDVLALGMLTCIRKGFDLLRNHYDKTYTLATIPQDDP 565

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
            + Y +++   T+G+FQ+ES   +  L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 566  KVYEMISHADTIGVFQIESRAQQSMLPRLKPKNFYDLVIEVAIVRPGPIQGDMVHPYLRR 625

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            +NG+E +      ++ +L  T GV ++QEQ M+IA + +G++ +EAD LRR+M       
Sbjct: 626  RNGEEPVEYPSKELEDILGRTLGVPLFQEQAMKIAIVAAGFTPAEADKLRRSMATFKLNG 685

Query: 725  -MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             + + +++ I G +  G ++  A  IF  L  F  YGF +SHAA++A++ Y + WMK +Y
Sbjct: 686  LVTQFEKKLIDGMTGRGYTEEYARRIFRQLEGFGSYGFPESHAASFALLVYVSCWMKCYY 745

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYYS 838
            P  F  A +  +     +  +   DAR+  +++ P  VN    D  + +       I   
Sbjct: 746  PDVFATALLNSQPMGFYQPAQIVIDARKHGVKVRPVDVNISSWDNTLEEPEGEYRAIRLG 805

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
               +KG+    A  ++      P+ ++      +    +++  LE L  A A    G  R
Sbjct: 806  FRQVKGLAKKDALALLAGRT-GPYKAIH----LMRDAGVSQEALEKLADADAFRSMGMDR 860

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             Q +     +           + +    FA  K     +  +E     + S     +   
Sbjct: 861  RQAMWEASAL-----------SERPMGAFAGHKSASEFEAPVE-LPKLSLSEHVVQDYMS 908

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
                   HP+   +  L    +    +         +R+A +V+ +Q+  T  G  + ++
Sbjct: 909  TSLSLKAHPVSFVRQDLVAKRVIKTADLAGLRDKQFVRVAGLVLVRQRPGTAGG--VCFI 966

Query: 1019 TFSEPAKEYEANFF 1032
            T  + +       F
Sbjct: 967  TIEDESGVANLVVF 980


>gi|33596275|ref|NP_883918.1| error-prone DNA polymerase [Bordetella parapertussis 12822]
 gi|71151815|sp|Q7W9W1|DNAE2_BORPA RecName: Full=Error-prone DNA polymerase
 gi|33566044|emb|CAE36941.1| putative DNA polymerase III alpha chain [Bordetella parapertussis]
          Length = 1052

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 257/1048 (24%), Positives = 417/1048 (39%), Gaps = 83/1048 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L+GA     ++ +       A+A+TD  +L   +    +A    + 
Sbjct: 6    PGYAELHCQSNFSFLQGASHPEELVTRAGELGYAALALTDECSLAGVVRAHVEAREQKLP 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG    +                     + LL    EGY  L EL++        K  
Sbjct: 66   LIIGSSFTLQAG-----------ADAPPLDLTLLAQNREGYGNLAELITLGRGRAA-KGQ 113

Query: 129  VRICLSWLQEIGTE--------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
              +  + ++    +          + +     G               ++          
Sbjct: 114  YLLTPADIEAPAGDNAHLRGMPDCLAILAPPPGLAAERLA--------EQARWLAAQCPG 165

Query: 181  RLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            R ++ L   H   D    + V   A+   LP+VA   +          HD L A+     
Sbjct: 166  RAWIGLTLLHHCRDDLHRAAVEHAAHASGLPIVALGQAQMHRRSRKPLHDTLAAIRTGRS 225

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            V Q     +  +     RS +        +AL  T+ IARRC+F L       P  I   
Sbjct: 226  VGQ-CGYDLAANAERHLRSRLRLASLYPAQALAQTLAIARRCTFSLDELQYEYPDEIVPA 284

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                     + LR +   G   R  +G             +++ EL +I  +++  YFL 
Sbjct: 285  G----HTPASYLRQQTYLGARQRFPEGM------TPAVAAQVEKELALINELRYEAYFLT 334

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D + +A+   I    GRGS A S   Y L IT +DP R + LFERF++ +R   PD D
Sbjct: 335  VYDIVGYARSQGIL-CQGRGSAANSAVCYCLGITAVDPARGNTLFERFISKERNEPPDID 393

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF   RR+EVI+Y+  KYG +R A      S + ++ LRD GRAL +    +D + +  
Sbjct: 394  VDFEHQRREEVIQYIYEKYGRQRAALTAVVISYRPRSVLRDTGRALGVDNGIIDAVARAH 453

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                     L+++A          A     +  E+++ L G  RH S H  G VI    L
Sbjct: 454  QWWDGKKEMLRSLAAC----GLDPASRVARQWAELAETLMGFPRHLSQHPGGFVISRGKL 509

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DL 598
            S+LVP+         V Q++   ++   L+K D L L  L++L+++L    QR  +   L
Sbjct: 510  SRLVPIENAAMPGRSVVQWDKDDLDALRLLKVDVLALGMLSVLRRALALAGQRRGRPLAL 569

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   
Sbjct: 570  HEIPPDDDATYDMICAADTIGVFQIESRAQMSMLPRLRPRQYYDLVVQVAIVRPGPIQGG 629

Query: 659  V--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +   Y  R+ G+E I    P +   L  T GV I+QEQVMQIA   +G++  EAD LRR+
Sbjct: 630  MVPPYLRRRQGREDITYPGPAVRKALARTLGVPIFQEQVMQIAVDAAGFTPGEADALRRS 689

Query: 717  MGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M     K  +DK + + + G      +   A  +F  +  F +YGF +SHAA++A+++Y 
Sbjct: 690  MAAWRRKGGVDKFRAQLVGGLLARNYTADFAQALFRQIEGFGEYGFPESHAASFALLAYA 749

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD--- 832
            ++W+K H P  FLAA +  +        +  QDAR+  ++++P  V     +  + D   
Sbjct: 750  SSWLKCHEPEAFLAALLNSQPMGFYAPAQLVQDARRHGVRVLPADVLYSGWEASLQDAPG 809

Query: 833  ---NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                 +   L  +KG+   +AR I +A   +PF    D   R                  
Sbjct: 810  AARPAVRLGLNLVKGLREDSARAIEQARVRRPFADTADMARRA----------------- 852

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI----TLEKFSV 945
                 G  R  L               +   +      A  +    + +           
Sbjct: 853  -----GLPRQALDALAAADALRTLAGHRRLASWQAAASAQSRDLLREAVIVETETPALPA 907

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             +       + R +G     HPL + +P L     +              R   +V  +Q
Sbjct: 908  PSEGQTVAADYRSVGLTLGRHPLALLRPQLAARNFQTAAVLNTYPNRRLARACGIVTVRQ 967

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +T KG+   +VT  +      A   P
Sbjct: 968  RPQTAKGT--IFVTLEDETGPINAVVRP 993


>gi|295398598|ref|ZP_06808630.1| DNA-directed DNA polymerase III alpha subunit [Aerococcus viridans
            ATCC 11563]
 gi|294973199|gb|EFG48994.1| DNA-directed DNA polymerase III alpha subunit [Aerococcus viridans
            ATCC 11563]
          Length = 1162

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 313/1039 (30%), Positives = 513/1039 (49%), Gaps = 45/1039 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L V+S+YSLL   +S+   +   A      + + D N +  +L F +     GI P+
Sbjct: 2    FVPLHVNSAYSLLTSPMSVEAYVQAGATAGYTHLGLADVNVMSGSLAFVRACEQNGITPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  +  ++ +  +              +V+     EGYQ L+ L S + L  +  +  R
Sbjct: 62   IGLTVQFNIDNVKE-------------ELVVYAKNYEGYQHLMALSSSLKLQAEANR--R 106

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS----SQVAEKRLLTFKKLFGDR-LYVN 185
                 +  +  +  I++    +GP  R              E+ LL +++ F D  L++ 
Sbjct: 107  AIYQEIT-MHADDYIVIFSAMTGPHMRYLKQGDGQADYDQLEEELLWWRRHFSDDQLFLG 165

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            L      +++    +++L+    +PLVA  +  + + +D+    VL A+ ++  ++  D 
Sbjct: 166  LSA-LENEQFHAKAIIELSEQSGVPLVAMPHIQYANPDDFFTQQVLEAIDNNKPMTGIDE 224

Query: 246  PRV----TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             +              ++M     D     +++++        + +  P +   + K   
Sbjct: 225  LKQVKGSHALRNPDQWAKMYQDPDDQDSVYKDSLDRLEVAVKGIDIVFPQIETLLPKYPL 284

Query: 302  DIQKEEE-NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              +       L++ A AGL  R+A            Y  RL +EL+VI  M F  YFLIV
Sbjct: 285  PSEYTATPKYLKDLAEAGLVKRVAN-------ITDAYTDRLAYELSVIHDMGFDDYFLIV 337

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +A +++I  GPGRGS AG++ AY L ITD+DP+   LLFERFLNPDR +MPD D+
Sbjct: 338  WDVMNYAHQHHIQTGPGRGSAAGALVAYVLEITDVDPIANDLLFERFLNPDRQNMPDIDL 397

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  ++R EV+ YV  KYG   VAQI TFG+  A+ ALR+VG         +      + 
Sbjct: 398  DFPDNKRQEVLDYVYRKYGDNHVAQIATFGTFGARQALRNVGSVFGKAQVTLSEWANTVG 457

Query: 481  NDPAHP--VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            N+P  P            + RE    +       + ++KLEGL RH STHAAG+VI D+P
Sbjct: 458  NNPNLPAETLTSVYDQSQKLRELIENEDHGQLWFDTARKLEGLPRHVSTHAAGVVIADQP 517

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVD 597
            L+   P+     + +P TQ+ M  +E  GL+K DFL L  LT+L   L          V 
Sbjct: 518  LTLHTPLQ-ASSTHIPNTQYTMGDVEAVGLLKVDFLSLSNLTILHDGLAAVGKLTSRPVK 576

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               IP DD +TY +     T G+FQ ES G++  L+ + P  IED++A+ +LYRPGP+  
Sbjct: 577  ALDIPLDDPKTYEIFQHADTNGVFQFESDGIKNVLKQVAPTSIEDVVAVNALYRPGPVQQ 636

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  +  RK+G+E I   HP + P+L  T G+++YQEQVMQ+ Q ++G+SL EAD+LRRA+
Sbjct: 637  IPHFVARKHGREAIAYPHPDLAPILAPTYGIMVYQEQVMQVTQKIAGFSLGEADILRRAI 696

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            GKK  E ++  +++FISGA +NG  +++AV I++ +  FA+YGFNKSH+ AY+ ++YQ A
Sbjct: 697  GKKKHETIENVRKQFISGAIENGYQESVAVQIYDYIEAFANYGFNKSHSFAYSYLAYQLA 756

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIY 836
            W+K +YPV F   ++       +K K    +A+   ++++ P +N        V D+++ 
Sbjct: 757  WIKANYPVAFYYGNLKHTRIYDKKGKNLVLEAKNHGVEVVNPDINKSFYGLSVVDDHQLQ 816

Query: 837  YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
              L  I+G+       +++A  A+ PF    DF  R+    L   +L  L  AGALD FG
Sbjct: 817  LGLGDIRGIPKRAVEEMIQAREAEGPFKDFTDFIHRLGKLALKEDILVKLAQAGALDSFG 876

Query: 896  YSRMQL-LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            Y+R  L L+++  +  + Q  + +   +  ++   +  +      + +    +     EN
Sbjct: 877  YNRRTLQLEAIPKMITHEQLFKTD-NQRQTSLLGDDDLSAMFAPKIVEIDEFDQHQLIEN 935

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            E   LG   S    + Y+   +  GI  Y E       +       V++ ++  T+K   
Sbjct: 936  EIETLGQALSISLFEDYEGFYQT-GIIDYIE--NLKENSKAFFLGEVIAVKRITTKKNQP 992

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + +VT  +   +     FP
Sbjct: 993  MAFVTVKDQTGQISVTAFP 1011


>gi|319401016|gb|EFV89235.1| DNA polymerase III subunit alpha [Staphylococcus epidermidis FRI909]
          Length = 1065

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 327/1026 (31%), Positives = 525/1026 (51%), Gaps = 85/1026 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI 
Sbjct: 3    AHLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +        T             V+L    +G + L +L S + + ++      +
Sbjct: 63   GMTIYLTDGLYTIET-------------VVLAKNNQGLKSLYQLSSAIMMKNKE----EV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRH 189
             + WL++     +I+                  + AE         F     LY+    H
Sbjct: 106  PIEWLKKYDKHLIII-----------------FKEAELSHKQIIDAFEGKKELYL---NH 145

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +     +            V   ++ +L+E+D E    L A+  +T +         
Sbjct: 146  NSNNTLTGKR------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKETL 193

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +H+           S+   A  NT EI + C   +  H  +LP+F+    +      ++
Sbjct: 194  DEHFPSIEELQTLNLSEDMIA--NTNEIEKLCQAEIAYHQSLLPQFVTPNGE----TSKD 247

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L    +  L+              + Y  RL  E  +I  M F  YFLIV+D I +AK 
Sbjct: 248  YLWTILIHRLQKWELND--------KTYFDRLKHEYKIITDMGFEDYFLIVSDLIHFAKT 299

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD DIDF   RR++
Sbjct: 300  HEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDIDIDFEDTRREK 359

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     +  
Sbjct: 360  VIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKLIPHKLGITLEE 419

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    F+     +   +R  E+S+KLEGL RH STHAAGI+I D+PL +  P+    
Sbjct: 420  AYQK--PEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQPLFKFAPLTTGD 477

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHET 608
                 +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  IP+DD + 
Sbjct: 478  TG--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINIDIEAIPYDDKKV 535

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++  
Sbjct: 536  FDLLSNGDTTGIFQLESEGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRHNP 595

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             ++  +HP ++P+LK T GVIIYQEQ+MQIA  ++ +S  EAD+LRRAM KK +  ++ +
Sbjct: 596  NQVAYLHPDLEPILKNTYGVIIYQEQIMQIASQVASFSYGEADILRRAMSKKNRAILESE 655

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            ++ FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F 
Sbjct: 656  RQHFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFY 715

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            A  ++  + + +K      +A+   I I+PP++N     +K  +  IY SL  IKG+G  
Sbjct: 716  ANILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYLSLGTIKGIGYQ 775

Query: 849  TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            + + I++    + P+    DF  R+  +  NR++LESL+  GA D FG +R  LLQ++D 
Sbjct: 776  SVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGKTRATLLQAIDQ 835

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +      VE++       +F       + K + E+       +  + E+  LGFY S HP
Sbjct: 836  VLDLNSDVEQDDM-----LFDL----LTPKQSYEEKEELPDQLLSDYEKEYLGFYISKHP 886

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            ++       K    G  +         I +       +Q +T+ G  + +VT ++     
Sbjct: 887  VE---KKFEKKQYLGIFQLSNGSHYQPILV--QFDHIKQIRTKNGQNMAFVTMNDGRTMM 941

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 942  DGVIFP 947


>gi|33602064|ref|NP_889624.1| error-prone DNA polymerase [Bordetella bronchiseptica RB50]
 gi|71151814|sp|Q7WHW8|DNAE2_BORBR RecName: Full=Error-prone DNA polymerase
 gi|33576502|emb|CAE33580.1| putative DNA polymerase III alpha chain [Bordetella bronchiseptica
            RB50]
          Length = 1052

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 257/1048 (24%), Positives = 418/1048 (39%), Gaps = 83/1048 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L+GA     ++ +       A+A+TD  +L   +    +A    + 
Sbjct: 6    PGYAELHCQSNFSFLQGASHPEELVTRAGELGYAALALTDECSLAGVVRAHVEAREQKLP 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG    +                     + LL    EGY  L EL++        K  
Sbjct: 66   LIIGSSFTLQAG-----------ADAPPLDLTLLAQNREGYGNLAELITLGRGRAA-KGQ 113

Query: 129  VRICLSWLQEIGTE--------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
              +  + ++    +          + +     G               ++          
Sbjct: 114  YLLTPADIEAPAGDNAHLRGMPDCLAILAPPPGLAAERLA--------EQARWLAAQCPG 165

Query: 181  RLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            R ++ L   H   D    + V   A+   LP+VA   +          HD L A+     
Sbjct: 166  RAWIGLTLLHHCRDDLHRAAVEHAAHASGLPIVALGQAQMHRRSRKPLHDTLAAIRTGRS 225

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            V Q     +  +     RS +        +AL  T+ IARRC+F L       P  I   
Sbjct: 226  VGQ-CGYDLAANAERHLRSRLRLASLYPAQALAQTLAIARRCTFSLDELQYEYPDEIVPA 284

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                     + LR +   G   R  +G             +++ EL +I  +++  YFL 
Sbjct: 285  G----HTPASYLRQQTYLGARQRFPEGM------TPAVAAQVEKELALINELRYEAYFLT 334

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D + +A+   I    GRGS A S   Y L IT +DP R + LFERF++ +R   PD D
Sbjct: 335  VYDIVGYARSQGIL-CQGRGSAANSAVCYCLGITAVDPARGNTLFERFISKERNEPPDID 393

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF   RR+EVI+Y+  KYG +R A      S + ++ LRD GRAL +    +D + +  
Sbjct: 394  VDFEHQRREEVIQYIYEKYGRQRAALTAVVISYRPRSVLRDTGRALGVDNGIIDAVARAH 453

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                     L+++A          A     +  E+++ L G  RH S H  G VI    L
Sbjct: 454  QWWDGKKEMLRSLAAC----GLDPASRVARQWAELAETLMGFPRHLSQHPGGFVISRGKL 509

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DL 598
            S+LVP+         V Q++   ++   L+K D L L  L++L+++L    QR  +   L
Sbjct: 510  SRLVPIENAAMPGRSVVQWDKDDLDALRLLKVDVLALGMLSVLRRALALAGQRRGRPLAL 569

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   
Sbjct: 570  HEIPPDDDATYDMICAADTIGVFQIESRAQMSMLPRLRPRQYYDLVVQVAIVRPGPIQGG 629

Query: 659  VVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V+    R+ G+E I    P +   L  T GV I+QEQVMQIA   +G++  EAD LRR+
Sbjct: 630  MVHPYLRRRQGREDITYPGPAVRKALARTLGVPIFQEQVMQIAVDAAGFTPGEADALRRS 689

Query: 717  MGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M     K  +DK + + + G      +   A  +F  +  F +YGF +SHAA++A+++Y 
Sbjct: 690  MAAWRRKGGVDKFRAQLVGGLLARNYTADFAQALFRQIEGFGEYGFPESHAASFALLAYA 749

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD--- 832
            ++W+K H P  FLAA +  +        +  QDAR+  ++++P  V     +  + D   
Sbjct: 750  SSWLKCHEPEAFLAALLNSQPMGFYAPAQLVQDARRHGVRVLPADVLYSGWEASLQDAPG 809

Query: 833  ---NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                 +   L  +KG+   +AR I +A   +PF    D   R                  
Sbjct: 810  AARPAVRLGLNLVKGLREDSARAIEQARVRRPFADTADMARRA----------------- 852

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI----TLEKFSV 945
                 G  R  L               +   +      A  +    + +           
Sbjct: 853  -----GLPRQALDALAAADALRTLAGHRRLASWQAAASAQSRDLLREAVIVETETPALPA 907

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             +       + R +G     HPL + +P L     +              R   +V  +Q
Sbjct: 908  PSEGQTVAADYRSVGLTLGRHPLALLRPQLAARNFQTAAVLNTYPNRRLARACGIVTVRQ 967

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +T KG+   +VT  +      A   P
Sbjct: 968  RPQTAKGT--IFVTLEDETGPINAVVRP 993


>gi|242242967|ref|ZP_04797412.1| DNA polymerase III alpha chain [Staphylococcus epidermidis W23144]
 gi|242233568|gb|EES35880.1| DNA polymerase III alpha chain [Staphylococcus epidermidis W23144]
          Length = 1065

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 328/1026 (31%), Positives = 526/1026 (51%), Gaps = 85/1026 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI 
Sbjct: 3    AHLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +        T             V+L    +G + L +L S + + ++      +
Sbjct: 63   GMTIYLTDGLYTIET-------------VVLAKNNQGLKSLYQLSSAIMMKNKE----EV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRH 189
             + WL++     +I+                  + AE         F     LY+    H
Sbjct: 106  PIEWLKKYDKHLIII-----------------FKEAELSHKQIIDAFEGKKELYL---NH 145

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +     +            V   ++ +L+E+D E    L A+  +T +         
Sbjct: 146  NSNNTLTGKR------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKETL 193

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +H+           S+   A  NT EI + C   +  H  +LP+F+    +      ++
Sbjct: 194  DEHFPSMEELQTLNLSEDMIA--NTNEIEKLCQAEIAYHQSLLPQFVTPNGE----TSKD 247

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L    +  L+              + Y  RL  E  +I  M F  YFLIV+D I +AK 
Sbjct: 248  YLWTILIHRLQKWELND--------KTYFDRLKHEYKIITDMGFEDYFLIVSDLIHFAKT 299

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD DIDF   RR++
Sbjct: 300  HEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDIDIDFEDTRREK 359

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     +  
Sbjct: 360  VIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKLIPHKLGITLEE 419

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    F+     +   +R  E+S+KLEGL RH STHAAGI+I D+PL +  P+    
Sbjct: 420  AYQK--PEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQPLFKFAPLTTGD 477

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHET 608
                 +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  IP+DD + 
Sbjct: 478  TG--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINIDIEAIPYDDKKV 535

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++  
Sbjct: 536  FDLLSNGDTTGIFQLESEGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRHNP 595

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             ++  +HP ++P+LK T GVIIYQEQ+MQIA  ++G+S  EAD+LRRAM KK +  ++ +
Sbjct: 596  NQVAYLHPDLEPILKNTYGVIIYQEQIMQIASQVAGFSYGEADILRRAMSKKNRAILESE 655

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            ++ FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F 
Sbjct: 656  RQHFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFY 715

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            A  ++  + + +K      +A+   I I+PP++N     +K  +  IY SL  IKG+G  
Sbjct: 716  ANILSNVIGSEKKTAAIIDEAKHQRISILPPNINQSHWYYKASNKGIYLSLGTIKGIGYQ 775

Query: 849  TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            + + I++    + P+    DF  R+  +  NR++LESL+  GA D FG +R  LLQ++D 
Sbjct: 776  SVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGKTRATLLQAIDQ 835

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +      VE++       +F       + K + E+       +  + E+  LGFY S HP
Sbjct: 836  VLDLNSDVEQDDM-----LFDL----LTPKQSYEEKEELPDQLLSDYEKEYLGFYISKHP 886

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            ++       K    G  +         I +       +Q +T+ G  + +VT ++     
Sbjct: 887  VE---KKFEKKQYLGIFQLSNGSHYQPILV--QFDHIKQIRTKNGQNMAFVTMNDGRTMM 941

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 942  DGVIFP 947


>gi|187922215|ref|YP_001893857.1| DNA polymerase III subunit alpha [Burkholderia phytofirmans PsJN]
 gi|187713409|gb|ACD14633.1| DNA polymerase III, alpha subunit [Burkholderia phytofirmans PsJN]
          Length = 1043

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 255/1037 (24%), Positives = 446/1037 (43%), Gaps = 64/1037 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   +++S L GA     ++ + +      +AITD  +L   +    +A    + 
Sbjct: 3    PEYAELFAFTNFSFLRGASHGEELVLRASQLGYSGLAITDECSLAGVVRAHVEAKKEKLP 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             +IG    +   D                 ++LL    EGY  L E ++   +    K  
Sbjct: 63   LVIGSYFQLVNADR-----------SPAFGLILLAQNREGYGNLSEFITLGRMRAA-KGE 110

Query: 129  VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              +    + +       L  +    +  +    F  +      +L     +F  R +V L
Sbjct: 111  YLLTPHDISKPEKGYTHLRGMPDCLAILVPD--FPATEDALAVQLEWMNDVFAGRAWVGL 168

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              H    D      V  +A  + +P+VAT N +          D + A+     V  +  
Sbjct: 169  TLHQHAMDDIHRGIVEHVADQYRVPVVATGNVVMHVRSRKPLQDTMTAIRLRKTV-AECG 227

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     RS           AL  T+ I  RC+F L       P  +  E      
Sbjct: 228  YDLAPNAEGHLRSRFRLGNLYPTRALYETLNILERCNFSLDELRYEYPDELVPEGF---- 283

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E  LR +   G   R   G         + +++++ EL +I  +++  YFL V D ++
Sbjct: 284  THEAYLRQETYIGAHRRYPNG------IPHNVQEQIEHELQLIRELEYEAYFLTVYDIVR 337

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I    GRGS A S   Y L +T++DP R ++LFERF++ +R   PD D+DF   
Sbjct: 338  FARSQHIL-CQGRGSAANSAVCYCLGVTEVDPSRGNMLFERFISKERGEPPDIDVDFEHQ 396

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG +R A      + + + ALR+ G+AL +    VD++ K        
Sbjct: 397  RREEVIQYIYRKYGRDRAAIAAAVSTYRPRGALRESGKALGVDPQIVDKVAKSHQWFDHS 456

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               LQ  A+          +P +    +++ ++    RH S H+ G VI    L++LVP+
Sbjct: 457  ADLLQRFAES----GLDPENPLIGLWAKLAAQILNFPRHLSQHSGGFVISRGKLTRLVPV 512

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                 +D    Q++   +E  GL+K D L L  L+ ++++LD ++++   + ++  IP +
Sbjct: 513  ENATMADRSAIQWDKDDLEALGLLKIDVLALGMLSAIRRTLDIVSEQCGERFEMQDIPPE 572

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYN 662
            D  TY +++   T+G+FQ+ES      L  M+P    D++  V++ RPGPI    +  Y 
Sbjct: 573  DAATYEMISRADTVGVFQIESRAQMSMLPRMKPREFYDLVIEVAIVRPGPIQGGAVHPYL 632

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721
             R+ G E +      ++  L  T GV I+QEQVMQ+A L +G++  EAD LRRAM     
Sbjct: 633  RRRQGLEPVTYPSDALEVALGRTLGVPIFQEQVMQVAILAAGFTPGEADQLRRAMAAWKR 692

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K  +DK  +R ++G ++ G +K  A +IF+ +  F +YGF +SHAA++A++ Y ++W+K 
Sbjct: 693  KGGLDKYYDRIVNGMTERGYTKDFAESIFQQIHGFGEYGFPESHAASFALLVYASSWLKC 752

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR------I 835
            H P  FLAA +           +  QDA++  ++++P  V     D  +          +
Sbjct: 753  HEPEAFLAAMLNSMPLGFYSASQLIQDAQRHGVKVLPADVTISNWDSVLERETSASRPSV 812

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L+ +KG+    A  I  A A + F S+ D   R    +L+R  L+ L  A +L    
Sbjct: 813  RLGLSLLKGMKDGAAERIEAARAVRQFSSVSDLARRA---QLDRNDLKVLAAANSLSLLA 869

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R + L +       +  +     +     F                   +       +
Sbjct: 870  GNRREALWASVAAVPDSDILADACVDDETPAFG----------------APSEGEDIVAD 913

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
               +      HPL + +P L +  +      +    G   R   +V  +Q+  T KG  +
Sbjct: 914  YNSMSLTLGRHPLSLLRPALLEQRLMPAATLMTYRNGRLARGCGLVTVRQRPGTAKG--V 971

Query: 1016 GWVTFSEPAKEYEANFF 1032
             ++T  +         +
Sbjct: 972  MFLTIEDETGNVNIIIW 988


>gi|85708489|ref|ZP_01039555.1| DNA polymerase III subunit alpha [Erythrobacter sp. NAP1]
 gi|85690023|gb|EAQ30026.1| DNA polymerase III subunit alpha [Erythrobacter sp. NAP1]
          Length = 1191

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 262/1088 (24%), Positives = 456/1088 (41%), Gaps = 112/1088 (10%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E++P FV L + S +S L GA    ++     +    AI I D N+    +    +A   
Sbjct: 24   ERAP-FVELGLVSCFSFLRGASDAVDLAMTARSLGYDAIGIADANSFAGVVRIHTEATTL 82

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-- 123
             ++P+IGC++                      + +        Y RL  L+S   +    
Sbjct: 83   KLRPVIGCRI----------------ETVEGIAFLAYPKDRAAYGRLSRLISAGRMQTLS 126

Query: 124  ---QGKQSVRICLSWLQEIGTEGL-IMLTGGSSGPIDRAFF----------FNSSQVAEK 169
               Q K   +I L+ L E   EG+ ++L        + A                  A +
Sbjct: 127  GEWQEKGVCQIDLAMLAE-HGEGIQLILLPPEDLETEFAILVPSNVVPLRPQGDEAEAIE 185

Query: 170  RLLTFKKLFGDRLYVNLQR-------------HRGYDRYRESQVVQLAYTHELPLVATNN 216
             + +F ++        L R             +RG D  R  ++  LA+ + L L+ATN+
Sbjct: 186  VVASFGEILPH-----LTRQLPSLGHIAASYLYRGDDTARIDRLDALAHENGLTLLATND 240

Query: 217  SLFLSEEDYEAHDVLMAVAHSTVV-SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTV 275
              + + E     DV+ A+A+ T V           + +LK+  EM  +F+  P A+    
Sbjct: 241  VHYHAPERRPLQDVMTAIANKTTVAQAGHLLHANAERHLKSPQEMQHLFARWPHAIHAAR 300

Query: 276  EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
            E+A  C F L+      P  I  +        +  L  +  AG E R   G         
Sbjct: 301  EVADNCDFSLEELRYEYPEEIYPDGM----SPQEYLEIETWAGAERRYPHGV------PD 350

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV-GPGRGSGAGSVTAYALTITD 394
               Q L+ EL +IAR+  + YFL + D + +A+    P+   GRGS A S   Y L IT 
Sbjct: 351  SVEQTLERELALIARLDLARYFLTIKDIVDFARSVEPPILCQGRGSAANSAVCYCLEITS 410

Query: 395  IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
            +DP +  LLF+RF++ +R   PD D+DF  +RR+EVI+Y+  KYG ER     T    + 
Sbjct: 411  VDPAKHQLLFDRFISEERKEPPDIDVDFEHERREEVIQYIYKKYGRERAGLTATVIHYRP 470

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            + A+R+VG+A+ +       L K +       +S +  A+        + DP + R+L++
Sbjct: 471  RMAIREVGKAMGLSEDVTASLAKTVWGGWGREISEKHAAET----GMDITDPHLRRVLKL 526

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            ++++ G+ RH S H  G ++ +  L++ VP+      +    +++   IE  G++K D L
Sbjct: 527  TEQMIGMPRHLSQHVGGFILTEGALTETVPIGNGAMPERSFIEWDKDDIEALGILKVDVL 586

Query: 575  GLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
             L  LT ++K LD L     +   L+ +P +D ETY +L    +LG+FQ+ES      L 
Sbjct: 587  ALGMLTCIKKCLDLLEAHHGRALTLATVPREDPETYAMLRKGDSLGVFQVESRAQMNMLP 646

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNN----------RKNGKEKIVSIHPLIDPMLK 683
             ++P    D++  V++ RPGPI   +V+            +             +  +L+
Sbjct: 647  RLRPREFYDLVIQVAIVRPGPIQGDMVHPYLKRRRGAEPVQIPAPSPQHGPPDELSSILE 706

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEEMDKQKERFISGASKNGIS 742
             T GV I+QEQ M+IA   + +S  EA+ LR+AM     +  +D+ ++  +      G  
Sbjct: 707  RTLGVPIFQEQAMKIALDAAKFSSLEANRLRKAMATFRSRGMVDELQDMMVGRMVTRGYD 766

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
               A   F  +  F +YGF +SHAA++A + Y ++W+K H+P  F AA +  +       
Sbjct: 767  PDFAERCFNQIRGFGEYGFPESHAASFAHLVYVSSWLKCHFPAAFAAALLNSQPMGFYAP 826

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVG-------------DNRI--YYSLAAIKGVGT 847
             +  +DAR+  ++++PP VN    D  +              D  I     L  I G+  
Sbjct: 827  AQIVRDAREHGVEVLPPDVNASQWDCTLEEIGEAGDGETGRLDKHIAMRMGLRQIDGLPE 886

Query: 848  TTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
              A  ++ A  +   +  + +   R     L    +E L  A A    G SR Q L    
Sbjct: 887  HIAAQLIAAREEGGGYRDVAELRER---GGLGPAHIERLASADAFTSLGLSRRQALWDAR 943

Query: 907  NIQKYAQWVEKNRTNKHENIF-AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            ++                 +F A  +     +    +      S     + +        
Sbjct: 944  SLI----------AGPDLPLFRAAAERDEGAERARTQLPAMPLSEEVVADYQTTRLSLKA 993

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+   +  L + G     +       + +++A +V+ +Q+  + KG  + ++T  +   
Sbjct: 994  HPMSFLRAGLAERGFVRACDLRNRKFRSMVKVAGVVLIRQRPGSAKG--VCFITLEDETG 1051

Query: 1026 EYEANFFP 1033
                  +P
Sbjct: 1052 VINLVVWP 1059


>gi|254796559|ref|YP_003081395.1| DNA polymerase III subunit alpha [Neorickettsia risticii str.
            Illinois]
 gi|254589796|gb|ACT69158.1| DNA polymerase III subunit alpha [Neorickettsia risticii str.
            Illinois]
          Length = 1060

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 421/1014 (41%), Positives = 605/1014 (59%), Gaps = 79/1014 (7%)

Query: 23   LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82
            +        I+D   A   PA+A+TD + +  ALEF++ A A+GIQPIIG  L I     
Sbjct: 1    MRAVTKPRKIVDLARAAGMPAVALTDIDTMAGALEFAEYAKASGIQPIIGVDLSI----- 55

Query: 83   LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142
                    +       ++L+    EGY+ +I+L   + L        R+ L+ +    ++
Sbjct: 56   --------SHNRVDSRLLLIAKNEEGYRNMIKLSGIVSLR-------RVALNEVFTY-SK 99

Query: 143  GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQ 202
            GLI+L     G        + S  AE  +   K++F   L++ +QR    ++  E +++Q
Sbjct: 100  GLILLL----GEFFIDAINSYSIDAETLVSDLKQVFDKDLFIEIQRLG--NQSAEEKLIQ 153

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
            L Y H +P VATN+ LF   +  EAHDVL  +   T V+  +R   +P+ Y K+  EMV+
Sbjct: 154  LGYKHNIPFVATNDVLFPDTDFREAHDVLTCIGSLTYVNDINRIHYSPESYFKSTEEMVA 213

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
            +F+DL EAL NTV IARRCSF+ +V +PILP+F  +       +E +ELR  + AGL+ R
Sbjct: 214  LFADLKEALHNTVLIARRCSFMPEVRSPILPKFECEM------DESDELRRLSYAGLQRR 267

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
            +           Q+Y  RL++EL +I  M ++GYFLIVADFI W+K N I VGPGRGSG 
Sbjct: 268  MGADV------PQNYLDRLEYELGIIIDMNYAGYFLIVADFICWSKANGIVVGPGRGSGV 321

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GS+ A+ L IT +DPL+F+L FERFLNP R+SMPDFD+DFCQ++R  VI YV+ KYG   
Sbjct: 322  GSIVAWCLGITGLDPLKFALFFERFLNPVRVSMPDFDVDFCQEKRHLVIEYVRKKYG--H 379

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQAIADDSRFREA 501
            VAQI+TFG+LQ +AALRDVGR LQ+PY +VDR+CK+IPN+PA+P+S  +AI  D   ++ 
Sbjct: 380  VAQIMTFGTLQPRAALRDVGRVLQLPYGRVDRICKMIPNNPANPISLQEAINLDKDLQKE 439

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
               D S+ +LL+++ KLEG  RHASTHAAGIVI D P+   +P+Y D  SD+PVTQ++MK
Sbjct: 440  SENDESIAKLLDLALKLEGTLRHASTHAAGIVISDTPIDDYLPIYHDKESDIPVTQYSMK 499

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            ++EKAGLIKFDFLGLKTLT++ ++   +  +    D+  IP DD  TY LL+    +G+F
Sbjct: 500  YVEKAGLIKFDFLGLKTLTVINQACSLVRLKNPNFDIDSIPLDDKRTYDLLSAGNAIGVF 559

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            QL+++ M + L+ + PDC EDIIAL+SL RPGP+ NI  Y  RK+ KE +   HPL++  
Sbjct: 560  QLDNAYMCETLKRLHPDCFEDIIALISLNRPGPMANIPTYIARKHRKEAVKYPHPLLESS 619

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            LKET GV+IYQEQVM++ +LL+GY+L+EAD+LRR MGKKI+ EM +Q E+F+ GA +NGI
Sbjct: 620  LKETFGVVIYQEQVMEMVRLLAGYTLAEADILRRVMGKKIRAEMSEQAEKFVEGAKRNGI 679

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
                A  IFE++ KFA YGFNKSHAAAYA+ISYQTA++K ++P+EF  A++ LE+ + +K
Sbjct: 680  DTERAREIFEMIEKFAGYGFNKSHAAAYALISYQTAFLKANFPLEFTTAALNLELHHTDK 739

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
            +    QDA+   I I+PP +N   + F + DN I YSLAA+K VG   A  I + S   P
Sbjct: 740  LAILIQDAKNCGITILPPDINKSKIFFSIEDNAIRYSLAALKNVGEAAASAIQKRS---P 796

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F ++ +    +D K ++R+ +ESL+ +GALD     R  L   L ++        K    
Sbjct: 797  FKTIAELQRCLDGKMVHRKAVESLIKSGALDVLSPERSGLYSCLKDLV------GKEDDG 850

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
                +F          +        N   R + E    GF+   HPL  Y+  L+     
Sbjct: 851  AQMTLFEIAATKPEKTVK-----PWNFFERTQCEFDAFGFFLYDHPLFPYRKFLK----- 900

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV---TFSEPAKEYEANFF 1032
                           +A ++    + ++R   +   +   T ++         F
Sbjct: 901  -------LSPNQ---IAGVITEL-RIRSRGDRKFAVMHVSTVNDIY----TVVF 939


>gi|303233203|ref|ZP_07319876.1| putative DNA polymerase III subunit alpha [Atopobium vaginae
            PB189-T1-4]
 gi|302480788|gb|EFL43875.1| putative DNA polymerase III subunit alpha [Atopobium vaginae
            PB189-T1-4]
          Length = 1302

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 320/1051 (30%), Positives = 507/1051 (48%), Gaps = 94/1051 (8%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I PI GC++++     ++     +    T   + LLV   +GY  L++LVS         
Sbjct: 125  ITPIFGCEVNLIPDSCIE-----RGTTQTRYHLPLLVKNNQGYHNLMKLVSEAS-NKMMY 178

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               R+ L  L+    EGLI L+G   G I R    ++   AE      + +FGD  Y+ L
Sbjct: 179  YRPRVTLDMLRTYH-EGLICLSGCYQGVIARMVVQHAMDEAEGWARALQDIFGDDFYLEL 237

Query: 187  QRH--------RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            Q H           +      +  +     +  VATN++ + S +D E  D+L  ++  T
Sbjct: 238  QDHNISLDSWGGMTETDIAHTIYDMGKKLGIATVATNDNHYFSRDDVETRDLLSCISAGT 297

Query: 239  VVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             + +  +      ++Y+K + EM S+FS  P+A+E T  IA++C+F L      LP+F  
Sbjct: 298  HLDESYQTTLPGSEYYMKTQEEMSSLFSWAPDAIEQTYAIAQKCNFELDWTNMYLPKFP- 356

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                   +  E+  R +  AGL  +  +       +  + ++R ++E  VI    F+ YF
Sbjct: 357  --GLREGESSEDRFRAECEAGLARKYGKDWEHTVINGVNVKERFEYEYGVICFKGFADYF 414

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV ++++WAK++ I VGPGRGS AG++ AYA+ IT  DPL   L+FERFL+P+R  MPD
Sbjct: 415  LIVQEYVRWAKEHGIGVGPGRGSAAGAIVAYAMDITTFDPLENGLMFERFLSPERTEMPD 474

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  +RR EV+++V+  YG ERV  +IT+ +++AK A+ D  R L  P S   +L K
Sbjct: 475  IDMDFDDERRLEVVQHVRELYGSERVCHVITYSTIKAKQAINDAARVLNYPVSLGQKLSK 534

Query: 478  LIPNDPAHPVSL-------QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            +I NDP   +S        +    +  F +    +    R+++ ++ +EGL R    HA 
Sbjct: 535  MISNDPKVKLSYVLEKTDGKEDMYNPDFLKEYETNADERRIIDAARAIEGLTRGEGVHAC 594

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
             ++I   P++  VP   D +  + +TQ+    +   GL+K DFLGL+TLT++ K+L+ + 
Sbjct: 595  AVLIAPTPVNDHVPTKLDTKGGVEITQYEGHSVADMGLLKMDFLGLRTLTVISKTLENIR 654

Query: 591  QRGV-----------------------KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
             R                          +D + I F D   Y LL++  T G+FQ+ES G
Sbjct: 655  TRYPDLSLIDTFSPTVKAALKEGATSIDIDPAKIDFSDPAIYKLLSSGHTAGVFQVESEG 714

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKET 685
            M   ++ M+P     I+AL++LYRPGP+   +V  Y NR NG+E +V     +  +L ET
Sbjct: 715  MTATIKNMKPREFRQIVALIALYRPGPLGAGMVTSYINRMNGREPVVFYDDRLSEILDET 774

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADV-------------LRRAMGKKIKEEMDKQKERF 732
             G I+YQEQVMQI+  +SG+S  E+D              L   +      + +   + +
Sbjct: 775  YGTIVYQEQVMQISVKMSGFSKGESDSRIRKPVAKKKIALLTSTIFHWENGKDETTYDHW 834

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            + GA  NG  + +A  I++ + +FA Y FNKSH+A YA++  QTAW+K H+P E++A+ +
Sbjct: 835  MGGAKANGYKEDVAQKIWDDVLEFASYAFNKSHSAGYAILVMQTAWLKAHFPREYMASVL 894

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            T  M   +KI  +        I I+PP +N    DF      + +  A I+GVG      
Sbjct: 895  TSYMGKTDKITHYISACHHEGIDILPPDINESRRDFTATAQGVRFGFAGIRGVGEQVGEA 954

Query: 853  IMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN---- 907
            IM+  AD  PF  L DF +R DS   NRRV+E+L+ AGA D  GY R QL+  +D     
Sbjct: 955  IMQERADHGPFLHLHDFVNRSDSACANRRVVEALIKAGAFDASGYPRCQLMGFVDKNNPK 1014

Query: 908  -IQKYAQWVEKNRTNKHENIFA-----HEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             I   A   +K+R+    ++F         G       ++     +       E+ VLG 
Sbjct: 1015 NILDSAAKQQKSRSMGQLSLFDLYGNVEGSGFEQHIPPIDPNDSWDQGFMLAQEREVLGI 1074

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATI-----------------RGNNIRLAAMVVSK 1004
            Y S HPL  Y   + +       +   T                      +RLA ++ + 
Sbjct: 1075 YVSDHPLRPYHVAVERSRDVSISQLEETREVHDEDGSLLRLEYTVADHQTVRLAGIISAS 1134

Query: 1005 QQKK--TRKGSRIGWVTFSEPAKEYEANFFP 1033
                  T+K  ++     S+   E     FP
Sbjct: 1135 SVIVTLTKKQQQMARCMLSDEEAEVSMVVFP 1165



 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
          FVHL  HS +S+L+ A S+  ++        PA+A+TD   +F   +F     +  
Sbjct: 3  FVHLHNHSQFSILDAATSIQRMVKAAVERHMPALALTDHEYMFGVPDFDLACRSYN 58


>gi|188577888|ref|YP_001914817.1| error-prone DNA polymerase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|254777929|sp|B2SI43|DNAE2_XANOP RecName: Full=Error-prone DNA polymerase
 gi|188522340|gb|ACD60285.1| error-prone DNA polymerase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 1083

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 262/1047 (25%), Positives = 452/1047 (43%), Gaps = 87/1047 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + +   G++
Sbjct: 46   PTYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEASRVTGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                      VLLV  A GY ++  LV+        K +
Sbjct: 106  LIVGSEFTLIDG----------------TRFVLLVENAHGYPQVCGLVTTAR-RAASKGA 148

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+  + ++    +         +  +   +       AE+     +++FG+R ++ ++ 
Sbjct: 149  YRLGRADVEAQFRD--------VAPGVFALWLPGVQPQAEQGA-WLQQVFGERAFLAVEL 199

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D   R   +  LA    +  VA+ +       +    D L A+ H T+   +    
Sbjct: 200  HREQDDGARLQVLQALAQQLGMTAVASGDVHMAQRRERIVQDTLTAIRH-TLPLAECGAH 258

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +  +     R+            L+  V +A+RC+F +   +   PR +  E        
Sbjct: 259  LFRNGERHLRTRRALGNIYPDALLQAAVALAQRCTFDISKISYTYPRELVPEG----HTP 314

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR    AG+  R   G  A        R+ ++ EL +IA  K+  +FL V D +++A
Sbjct: 315  TSYLRQLTEAGIRKRWPGGITA------KVREDIEKELALIALKKYEAFFLTVQDVVRFA 368

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++ NI    GRGS A S   YAL IT ++P    LL  RFL+  R   PD D+DF  +RR
Sbjct: 369  REQNIL-CQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFEHERR 427

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L            
Sbjct: 428  EEVLQYVYRKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGETP 487

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              Q I +        LA+P ++++L +++ L    RH S H  G VI D PLS LVP+  
Sbjct: 488  MEQRIEE----AGFDLANPLINKILLVTEHLRDHPRHLSQHVGGFVISDEPLSLLVPVEN 543

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
               +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P +D 
Sbjct: 544  AAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRDYSIATLPGEDL 603

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 604  PTYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGDMVHPYLRR 663

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-E 723
            + G+E +    P ++ +LK T GV ++QEQVM++    + Y+ SEAD LRR+M    +  
Sbjct: 664  RQGREDVSYPSPAVEDILKPTLGVPLFQEQVMELLMHAADYTESEADNLRRSMAAWRRGG 723

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +M++ + R        G + T    IFE +  F  YGF +SHAA++A + Y + W+K H 
Sbjct: 724  DMEQHRTRVRERMQGKGYASTFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRHE 783

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQD-----ARQFNIQIMPPSVNTPCVDFKVGDN----- 833
            P  F    +  +        +  QD       +  ++++P  V     D  +        
Sbjct: 784  PAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVVHSDWDNTLVGGRPWRS 843

Query: 834  --------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                     I   +  + G+    A+ I+ A   + F  + D C R     L+ +   +L
Sbjct: 844  AADPGEQPAIRLGMRQVAGLSDVVAQRIVAARTQRAFADIGDLCLRA---ALDEKARLAL 900

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              AGAL     +R     ++  ++     +                   S +     F  
Sbjct: 901  AEAGALQGMVGNRNAARWAMAGVEARRPLL-----------------PGSPEERPVAFEA 943

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             ++      + R +G     HP+ + +P +R+  I G  +      G+ + +A +V  +Q
Sbjct: 944  PHAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRDLQGRPHGSGVHVAGLVTQRQ 1003

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  T KG+   +VT  +         +
Sbjct: 1004 RPATAKGT--IFVTLEDEHGMINVIVW 1028


>gi|299069161|emb|CBJ40414.1| DNA polymerase III, alpha subunit [Ralstonia solanacearum CMR15]
          Length = 1075

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 254/1071 (23%), Positives = 426/1071 (39%), Gaps = 109/1071 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA   + ++ +  A    A+A+TD  ++   +     A  AG++
Sbjct: 12   PDYAELHCISNFTFLTGASHPHELVARAQAFGYRALALTDECSVAGTVRAHMAAKEAGLK 71

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG +  +                     +VLL    +GY  L E +++  L    K  
Sbjct: 72   LIIGSRFTVRDAQGEPWL-----------RLVLLAQDIDGYGNLCECITQARLA-APKGD 119

Query: 129  VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL--YV 184
             R+    L         L  +    +  +         +    +    +++FG+RL   +
Sbjct: 120  YRLLADDLAAPAGALAHLRGMPHCLAILLPDY--DPDPRYLLAQAQWCRQVFGERLSMAL 177

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             L      DR+R   V  ++   ++P+VAT +    S +    HDVL A+  S  +++  
Sbjct: 178  ELPLRHADDRHR-GTVAAVSEQTDVPMVATGDVAMHSRQRKPLHDVLTAIRLSRPIAECG 236

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLP---EALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                            ++ F       + L  +VE+A  C F L       P  +  E  
Sbjct: 237  LALAPSAEQAMRTRMQLAFFYQGERGAQVLRRSVELASLCDFSLDEITYEYPHEVVPEG- 295

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               +     L  + +AG   R  +            R +LD EL +IA +++  +FL V 
Sbjct: 296  ---QTPAGYLHAEVMAGAARRYGK------AIPAKVRAQLDEELALIAELRYEPFFLTVY 346

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D +++A+  +I    GRGS A S   Y L IT+++P   + LF RFL+  R   PD D+D
Sbjct: 347  DVVRFARSQSIL-CQGRGSAANSAVCYCLGITEVNPESGNTLFARFLSRARNEPPDIDVD 405

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F   RR+EVI+Y+  KYG  R A      + + ++ALRDVGRAL +    ++++ K    
Sbjct: 406  FEHQRREEVIQYIYKKYGLTRTALAAALITYRTRSALRDVGRALGIDLGVIEQVAKAQAW 465

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                       A  +  +      P V R   + ++L G  RH S H  G VI    LS+
Sbjct: 466  WDGR----HEFAQRAGQQGLDPESPLVQRWAGLIEQLRGFPRHLSQHVGGFVIAQGKLSR 521

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-------LAQRGV 594
            LVP+      +  V Q++   +E   L+K D L L  LT ++++LD         A    
Sbjct: 522  LVPIENAAMPERRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDLLDALPGRRAHYRA 581

Query: 595  KVDLSLIPFDDHE--TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               L++    D +  TY ++    T+G+FQ+ES   +  L  ++P    D++  V++ RP
Sbjct: 582  PGKLAMQHLPDEDTATYAMICRAETIGVFQIESRAQQSMLPRLRPSTYYDLVIQVAIVRP 641

Query: 653  GPIDNIVVYNNRKN-------GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            GPI   +V+   +          + +    P +  +L+ T GV I+QEQVM+IA    G+
Sbjct: 642  GPIQGGMVHPYLQRREAMRNGNPDCVTYPGPEVKAVLERTLGVPIFQEQVMEIAMKAGGF 701

Query: 706  SLSEADVLRRAM--GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            +  EAD LRR M   K+       Q                    +   +  FA+YGF +
Sbjct: 702  TADEADRLRRDMAAWKRKGNLTQHQARLMKEMVEVRHYDPAFVEALCRQMEGFAEYGFPE 761

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAA +A ++Y ++++K H P  F AA +  +        +  Q+AR+  ++++P  V  
Sbjct: 762  SHAAGFARLAYVSSFLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRSRVRVLPADVTA 821

Query: 824  PCVDFKV--------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
               D  +        G   I   L  I+G+       I+ A A  PF S+ED   R    
Sbjct: 822  SAWDCTLHARPDGAGGQPDIRLGLNRIRGMRPAAGERIVVARAQAPFSSVEDLAHRA--- 878

Query: 876  KLNRRVLESLVFAGALDCFG--------------YSRMQLLQSLDNIQKYAQWVEKNRTN 921
                          ALD                   R Q L     +Q+  Q        
Sbjct: 879  --------------ALDRHDLSVLAAANALLSLAGHRRQALWQTLALQEPGQDHA----- 919

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
                +    +   +  +        +       +   LG     HPL + +P L +M   
Sbjct: 920  ----LLRQARPVEAPLV----LPAPSLGEEVVADYGSLGLSLQSHPLSLLRPRLEQMRFV 971

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                      G   R   +V  +Q+  T KG+   +V+  +         +
Sbjct: 972  TAAALAGYRNGQLARACGIVTVRQRPGTAKGT--IFVSIEDETGTVNVVLW 1020


>gi|254201717|ref|ZP_04908081.1| DNA polymerase III, alpha subunit [Burkholderia mallei FMH]
 gi|147747611|gb|EDK54687.1| DNA polymerase III, alpha subunit [Burkholderia mallei FMH]
          Length = 1066

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 277/1053 (26%), Positives = 438/1053 (41%), Gaps = 80/1053 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 12   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 71

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 72   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 126

Query: 129  VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L         L  +    +  +        + V + +L  F  LFG+R  + L
Sbjct: 127  YRLTPRMLAAPPRALAHLRGVPDCFAILVPTY--PARADVLDAQLAWFDALFGERARLGL 184

Query: 187  -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             Q  R  D     QV        + +VA  +            D + A+        +  
Sbjct: 185  VQLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMP-IAECG 243

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     R+          +AL  T  +   C F L       P  I         
Sbjct: 244  HALAPNGEQHLRTRQRIAQLFPADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----H 299

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D ++
Sbjct: 300  TPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVK 353

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I    GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   
Sbjct: 354  YARSKDIL-CQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQ 412

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K        
Sbjct: 413  RREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGS 472

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               L   A            P +    EI+ +L    RH S H+ G V+    L++LVP+
Sbjct: 473  RDLLARFASV----GLDPEVPLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPV 528

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDL 598
                     V Q++   +E  GL+K D L L  L+ L ++ D +               L
Sbjct: 529  ENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRL 588

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI   
Sbjct: 589  EHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGG 648

Query: 659  VVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
             V+   +  +        +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD
Sbjct: 649  AVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEAD 708

Query: 712  VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRRAM     K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A
Sbjct: 709  ALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFA 768

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  +
Sbjct: 769  KLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASL 828

Query: 831  G----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                          +   L+ ++G+G   AR I  A A  PF S+++   R     L RR
Sbjct: 829  EAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRA---CLERR 885

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             LE+L  A A      +R   L                                 D+   
Sbjct: 886  DLEALAAANAFATLAGNRRDALWQA------------------------VAAAPIDEAVR 921

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                    +     + R +G   + HP+ + +P L    +           G   R   +
Sbjct: 922  PALGAPTEADDVFADYRTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGRLARACGL 981

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V ++Q   T KG  + +VT  +          P
Sbjct: 982  VTARQMPGTAKG--VLFVTLEDETGCVNVIVRP 1012


>gi|53724334|ref|YP_104628.1| error-prone DNA polymerase [Burkholderia mallei ATCC 23344]
 gi|67643462|ref|ZP_00442208.1| DNA polymerase III, alpha subunit [Burkholderia mallei GB8 horse 4]
 gi|121599722|ref|YP_991465.1| error-prone DNA polymerase [Burkholderia mallei SAVP1]
 gi|124384859|ref|YP_001027457.1| error-prone DNA polymerase [Burkholderia mallei NCTC 10229]
 gi|126448927|ref|YP_001082423.1| error-prone DNA polymerase [Burkholderia mallei NCTC 10247]
 gi|167001206|ref|ZP_02267005.1| DNA polymerase III, alpha subunit [Burkholderia mallei PRL-20]
 gi|254174862|ref|ZP_04881523.1| DNA polymerase III, alpha subunit [Burkholderia mallei ATCC 10399]
 gi|254207050|ref|ZP_04913401.1| DNA polymerase III, alpha subunit [Burkholderia mallei JHU]
 gi|254357531|ref|ZP_04973805.1| DNA polymerase III, alpha subunit [Burkholderia mallei 2002721280]
 gi|71151820|sp|Q62F99|DNAE2_BURMA RecName: Full=Error-prone DNA polymerase
 gi|52427757|gb|AAU48350.1| DNA polymerase III, alpha subunit, form 2 [Burkholderia mallei ATCC
            23344]
 gi|121228532|gb|ABM51050.1| DNA polymerase III, alpha subunit, form 2 [Burkholderia mallei SAVP1]
 gi|124292879|gb|ABN02148.1| DNA polymerase III, alpha subunit [Burkholderia mallei NCTC 10229]
 gi|126241797|gb|ABO04890.1| DNA polymerase III, alpha subunit [Burkholderia mallei NCTC 10247]
 gi|147752592|gb|EDK59658.1| DNA polymerase III, alpha subunit [Burkholderia mallei JHU]
 gi|148026595|gb|EDK84680.1| DNA polymerase III, alpha subunit [Burkholderia mallei 2002721280]
 gi|160695907|gb|EDP85877.1| DNA polymerase III, alpha subunit [Burkholderia mallei ATCC 10399]
 gi|238524817|gb|EEP88248.1| DNA polymerase III, alpha subunit [Burkholderia mallei GB8 horse 4]
 gi|243062927|gb|EES45113.1| DNA polymerase III, alpha subunit [Burkholderia mallei PRL-20]
          Length = 1063

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 277/1053 (26%), Positives = 438/1053 (41%), Gaps = 80/1053 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129  VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L         L  +    +  +        + V + +L  F  LFG+R  + L
Sbjct: 124  YRLTPRMLAAPPRALAHLRGVPDCFAILVPTY--PARADVLDAQLAWFDALFGERARLGL 181

Query: 187  -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             Q  R  D     QV        + +VA  +            D + A+        +  
Sbjct: 182  VQLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMP-IAECG 240

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     R+          +AL  T  +   C F L       P  I         
Sbjct: 241  HALAPNGEQHLRTRQRIAQLFPADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----H 296

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D ++
Sbjct: 297  TPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVK 350

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I    GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   
Sbjct: 351  YARSKDIL-CQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQ 409

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K        
Sbjct: 410  RREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGS 469

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               L   A            P +    EI+ +L    RH S H+ G V+    L++LVP+
Sbjct: 470  RDLLARFASV----GLDPEVPLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPV 525

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDL 598
                     V Q++   +E  GL+K D L L  L+ L ++ D +               L
Sbjct: 526  ENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRL 585

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI   
Sbjct: 586  EHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGG 645

Query: 659  VVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
             V+   +  +        +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD
Sbjct: 646  AVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEAD 705

Query: 712  VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRRAM     K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A
Sbjct: 706  ALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  +
Sbjct: 766  KLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASL 825

Query: 831  G----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                          +   L+ ++G+G   AR I  A A  PF S+++   R     L RR
Sbjct: 826  EAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRA---CLERR 882

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             LE+L  A A      +R   L                                 D+   
Sbjct: 883  DLEALAAANAFATLAGNRRDALWQA------------------------VAAAPIDEAVR 918

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                    +     + R +G   + HP+ + +P L    +           G   R   +
Sbjct: 919  PALGAPTEADDVFADYRTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGRLARACGL 978

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            V ++Q   T KG  + +VT  +          P
Sbjct: 979  VTARQMPGTAKG--VLFVTLEDETGCVNVIVRP 1009


>gi|150398216|ref|YP_001328683.1| DNA polymerase III subunit alpha [Sinorhizobium medicae WSM419]
 gi|167016912|sp|A6UDW8|DNAE2_SINMW RecName: Full=Error-prone DNA polymerase
 gi|150029731|gb|ABR61848.1| DNA polymerase III, alpha subunit [Sinorhizobium medicae WSM419]
          Length = 1116

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 255/1063 (23%), Positives = 443/1063 (41%), Gaps = 90/1063 (8%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC- 63
            +    +F  L   +++S LEGA     ++      +   + I D N++   +    KA  
Sbjct: 1    MSGDTAFYELGACTNFSFLEGAAPAEEMVVFAKKARLAGLGIADRNSVAGVVRAHAKAKM 60

Query: 64   -AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                 QP  G +L                     P ++       G+  L  L+S   L 
Sbjct: 61   ENYPFQP--GARLVFADG---------------TPDVLAYPRNRRGWGHLCRLLSAGNLR 103

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             + K    + L+ L E   E L+++                 +  +  L   ++  G+RL
Sbjct: 104  SK-KGDCTLHLADLLEWQEELLLIVMPDR--------VRPEPESLKPLLGKLQEHAGNRL 154

Query: 183  YVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ L  R+ G+DR+  + +  +A    + L+ATN++L+   +     DV+ A+     V+
Sbjct: 155  YLGLAPRYDGFDRHDFAVLATVARKAGIGLLATNDALYHDPDYRPLADVVTAIREHVPVA 214

Query: 242  Q-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                  +   + +LK+  EM  +FSD PEA+ NT +  R  +F L        R    + 
Sbjct: 215  GAGFLLQKNAERHLKSPREMARLFSDYPEAIANTQKFFRHLAFSLDE-----LRHQYPDE 269

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +   +     LR     G   R  +G        +  ++++++EL +I   K+  YFL V
Sbjct: 270  NAGGETPAESLRRLVSEGAAERYPEGV------PEKVQRQIEYELELINDKKYEPYFLTV 323

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
               +++A+   I    GRGS A S   + L ITD+DP +F+LLF+RFL+ DR   PD D+
Sbjct: 324  HKLVKFARSEKIL-CQGRGSAANSSVCFCLGITDVDPQKFTLLFDRFLSKDRDEPPDIDV 382

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EVI+Y+   YG E         S ++++A R+V +A          L   I 
Sbjct: 383  DFEHERREEVIQYIYRTYGKEHAGLAAAVISYRSRSAGREVAKAFGFSEDVQSALVSSIW 442

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                 P +     + +R      ADPS  R+L  +  L    RH S H  G VI    L 
Sbjct: 443  GWGNSPFT----EEQARGAGLDAADPSTRRVLAYASLLMNYPRHLSQHVGGFVITRDRLD 498

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL-- 598
            ++VP+      D  + +++   +++  ++K D L L  LT L K    L     +     
Sbjct: 499  EVVPIMNTAMPDRYMIEWDKDDLDELKILKVDVLALGMLTCLAKGFKLLEAHYGEPITLA 558

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             +        Y ++    T+G+FQ+ES      L  +QP  + D++  V++ RPGPI   
Sbjct: 559  EIYQDHQPAVYDMICRADTVGVFQIESRAQMSMLPRLQPREMYDLVIEVAIVRPGPIQGN 618

Query: 659  VVYNNRKNGK-----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            +V+   K  +     EK+    P +  +L+ T GV ++QEQ MQIA   +G+S SEAD L
Sbjct: 619  MVHPYLKRREGQRKGEKVKYPSPELKAVLERTLGVPLFQEQAMQIAITAAGFSPSEADRL 678

Query: 714  RRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM    +   +   + + + G   NG  +  A   F  +  F +YGF +SHAA++A +
Sbjct: 679  RRAMATFKRTGTIHTFERKMVEGMVANGYEREFAERCFNQIKGFGEYGFPESHAASFASL 738

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y +AW+KT+YP  F AA +  +        +  +DAR+  ++++P  +N    D  +  
Sbjct: 739  VYASAWLKTYYPDIFCAALLNAQPMGFYAPAQLVRDAREHGVKVLPVDINHSDWDALLEG 798

Query: 833  -----------------------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                                     +      +KG+       ++    +  + S+ D  
Sbjct: 799  EGQFRKESVDPRHADMREVIKTRKAVRLGFRLVKGLKQADMGALVACRGEG-YRSVHDLW 857

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             R     L+R VLE L  A A    G  R   L ++  + + +             +F  
Sbjct: 858  FR---SGLSRSVLERLADADAFRSLGLDRRAALWAVKALDEQSAVER-------LPLFEG 907

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
                              +  +  ++ R L      HP+   +    + GI    +  AT
Sbjct: 908  AGSLDLRAEPKVALPEMPAGEQVIHDYRTLTLSLKAHPVSFMREDFSRTGILRSRDLAAT 967

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              G  + +A +V+ +Q+  +  G  + ++T  +         +
Sbjct: 968  ATGKWVTVAGLVLVRQRPGSANG--VIFMTIEDETGIANIIVW 1008


>gi|294053669|ref|YP_003547327.1| DNA polymerase III, alpha subunit [Coraliomargarita akajimensis DSM
            45221]
 gi|293613002|gb|ADE53157.1| DNA polymerase III, alpha subunit [Coraliomargarita akajimensis DSM
            45221]
          Length = 1066

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 286/1052 (27%), Positives = 477/1052 (45%), Gaps = 70/1052 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V L   S+++ L GAL    ++         A A+ D N ++ A +F   A   G + +
Sbjct: 3    YVELHARSAFNFLRGALPPKAMVRAFREFGIGAAAMPDRNGVYGAPDFQFAAEELGFEAL 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-------- 122
            I  +L +                  +  + + V    GYQ L  L++RM+L         
Sbjct: 63   ISAELTLARG-----LEHTWLSGDYLGHLPVFVENRTGYQNLCRLLTRMHLRWRKQSGPL 117

Query: 123  -DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-D 180
              +        L+ L    +EGLI  TG   GP+  A+    ++  E  +     +F  D
Sbjct: 118  PGESDAYPAADLAELAA-HSEGLIATTGDREGPLACAWRAGGARALEAAMDVLCAVFPKD 176

Query: 181  RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            R+YV +QRH    +R     +V LA    +PL+ATN   + S       DV   + + T 
Sbjct: 177  RIYVEIQRHLVRSERPYNRALVALAEHKGVPLLATNGPAYASSTGRAVLDVFTCLRYHTT 236

Query: 240  VSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            + +  R      +  +K+ + M ++F DLP+A++NTV +A R  F L+      P++   
Sbjct: 237  LDRAGRLLEANTEQCIKSPAAMRALFEDLPQAVDNTVRLAARLQFRLRDLGYHFPKYPVP 296

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              +       + LR   + G +          G  ++  R++L+ EL +I ++ F+GYFL
Sbjct: 297  TGE----TMNSFLRKLTLFGAQN-------RYGSISRKVRRQLEHELKIIEKLGFAGYFL 345

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV D   +  +  I    GRGS A S   Y+L IT +DP+   LLFERFL+  R   PD 
Sbjct: 346  IVWDITNFCTERGIL-CQGRGSAANSAVCYSLGITAVDPIAGGLLFERFLSEGRKGWPDI 404

Query: 419  DIDFCQ-DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            DID     +R+ VI+ V  +YG    A        + ++A+R++G+ L +P   V+R   
Sbjct: 405  DIDLPSGAQREAVIQEVYQRYGKHSAAMTANVNHYRGRSAMREIGKVLGLPLDVVERFNA 464

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLAD--PSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            L             +    + ++A L    P     L++ +   GL R+   H+ G+VI 
Sbjct: 465  LFSRGD----FPHTLKMMDQIKQAGLDWENPRHQAALQVFKATTGLPRNLGQHSGGMVIC 520

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +  L+Q+VP+         V Q+N    E  G++K D LGL  + ++Q+ ++   +RG  
Sbjct: 521  NDALNQIVPLENASMEGRVVLQWNKDACEDLGMVKIDLLGLGMMAVMQECIELTHERGRG 580

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VDL+ I   D ETY LL    T+G+FQ+ES      L  MQP C  D+   V++ RPGPI
Sbjct: 581  VDLACIDKTDTETYDLLCRAETIGVFQVESRAQMATLPRMQPRCFYDLAIEVAIIRPGPI 640

Query: 656  DNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                   Y NR+NG E +  +   + P+L+ T G+ ++QEQV+++  +++G + SE++ L
Sbjct: 641  SGDLANPYLNRRNGIEPVTYLDERLKPILERTLGIPMFQEQVLKMGIVMAGLNASESEQL 700

Query: 714  RRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRA+G  + +E ++  K    +   + GI    A  I   +  FA YGF +SHA ++A+I
Sbjct: 701  RRALGFTRDEERVNAAKATLRARLQQRGIEGEKADWIVNTIDSFALYGFPESHAVSFALI 760

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +Y +AWMK H   EF  A +  +           QDAR++ ++ +PP V     D  + D
Sbjct: 761  AYASAWMKVHRTEEFFCALLNNQPMGFYGPATLIQDARRYGLRFLPPDVTRSEWDCTIED 820

Query: 833  NR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            +     I   L  I G+G      ++EA A +PF++L  F  R+ + +  +  L  L  A
Sbjct: 821  DEGAACIRIGLKMINGLGQPAVVAMLEARAVRPFETLAQF--RLGT-QFKQDELRVLAQA 877

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA---HEKGTFSDKITL----E 941
            GAL+ F  SR Q L +++   +              ++F+    E+    D +       
Sbjct: 878  GALNGFMASRRQALWAVEQPLE-------------LDLFSVAELEQQVAEDPVPYNRRAA 924

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                     R   +          HP+   +P LR       E       G  + +   V
Sbjct: 925  PLPEMTQWERLCADFATTSVTVGSHPMRQMRPQLRG-RTWTAESLNTARDGQRVTVVGAV 983

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +Q+  T KG  + +++  +         +P
Sbjct: 984  ICRQRPGTAKG--VLFLSLEDETGIINCVLWP 1013


>gi|197106729|ref|YP_002132106.1| DNA polymerase III, alpha subunit [Phenylobacterium zucineum HLK1]
 gi|196480149|gb|ACG79677.1| DNA polymerase III, alpha subunit [Phenylobacterium zucineum HLK1]
          Length = 1085

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 261/1077 (24%), Positives = 443/1077 (41%), Gaps = 119/1077 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA--AG- 66
             +  LQ  +++S L GA    +++    A    A+ I D N+L   +           G 
Sbjct: 3    RYAELQAVTNFSFLRGASHPGDLVVAADALGMEAVGICDHNSLAGVVRAWSAMRQLHEGG 62

Query: 67   --IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              ++ + GC+LD                    PS+++  S  E Y RL  L++      +
Sbjct: 63   SAVRALTGCRLDFVDGS---------------PSLLVYPSDREAYGRLTRLLTLGQRRSE 107

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RL 182
             K +  + L+   +   EG ++L          A   +    A       K+L GD   +
Sbjct: 108  -KGACTLRLADFLD-HAEGQLVL----------AVPPDRLDAA--FGDALKRLAGDLPDV 153

Query: 183  YVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++    R+   D  R S +  LA     P+VATN+ L+   E     DVL  +     + 
Sbjct: 154  WLAAARRYGARDLKRLSHLQALAEASGAPMVATNDVLYHGPERRPLQDVLTCIREKCTIH 213

Query: 242  QKD-RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            +   R +   + +LK   EM  +F+  P A+E TVEIA R  F L       P       
Sbjct: 214  EAGLRLQANAERHLKAPDEMARLFARFPGAVERTVEIAGRIGFDLSQLRYEYPDEPVPPG 273

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                K     LR+ A AG   R  +G        +  R+ +  EL++I ++ F  YFL V
Sbjct: 274  ----KTAIQHLRDLAWAGAAWRYPEGV------PEKVRKLVAHELDLIEKLDFPNYFLTV 323

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--FSLLFERFLNPDRMSMPDF 418
             D +++A+     +  GRGS A S   + L IT +DP +    LLF RF++ +R   PD 
Sbjct: 324  HDIVRYARDELKILCQGRGSAANSCVCFCLGITAVDPTKEDQDLLFSRFISENRGEPPDI 383

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF  +RR+EV++YV ++YG +R A + T    + + A+R VG+AL +       L   
Sbjct: 384  DVDFEHERREEVMQYVYDRYGRDRAAIVATVIHYRPRMAIRQVGKALGLTEDVTAALANT 443

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            +       V  Q I             P + R   ++Q+L G  RH S H  G V+  R 
Sbjct: 444  VWGSYGDGVPDQHIRQC----GLDPDAPEIRRATALAQELLGFPRHLSQHVGGYVLTKRR 499

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF---LAQRGVK 595
            L + VP+      D    +++   I+  GL+K D L L  LT L+KS +    L      
Sbjct: 500  LDETVPIGNAAMKDRTFIEWDKDDIDALGLMKVDVLALGMLTALRKSFELLPPLPDGTRI 559

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             D++ +P +D   Y +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI
Sbjct: 560  TDIAHVPQEDPGVYDMLCRADSVGVFQVESRAQMSMLPRLKPRRFYDLVVQVAIVRPGPI 619

Query: 656  DNIVVY----------NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
               +V+                          +  +L +T GV ++QEQ M++A   + +
Sbjct: 620  QGDMVHPYLKRRQGLEPAEFPAPSPAHGPPDELRAVLGKTYGVPLFQEQAMRLAIEAAKF 679

Query: 706  SLSEADVLRRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            + SEAD LRR+M          + +E+FI G +  G  +  A   F+ +  F  YGF +S
Sbjct: 680  TDSEADGLRRSMATFRANGRLWEYREKFIRGMTARGYDEGFAQRCFKQIEGFGSYGFPES 739

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HA ++A++ Y +AW+K H+P  F  A +  +     +  +  +DAR+  +++ PP V   
Sbjct: 740  HAISFALLVYASAWVKRHHPDVFCVAMLNSQPMGFYQPAQLVRDAREHGVEVRPPDVMAS 799

Query: 825  CVDFKVGDNR-----------------------IYYSLAAIKGVGTTTARHIMEASADKP 861
              D  + +                         +      IKG     A  ++ A     
Sbjct: 800  VWDCTLEETERASSSPVGGGGPRSGGGGLRRRPVRLGFRQIKGFRQDDAERLVRAREAGC 859

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD------NIQKYAQWV 915
              +++DF     +  L+RR LE L  A A       R Q L ++       N  + A  +
Sbjct: 860  -RTIQDFAQ---AAGLSRRALELLAEADAFRSLSMDRRQALWAVKGLAGELNALEAAPLL 915

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
             +    + + +                    + +     + R        HP+  ++  L
Sbjct: 916  ARQSAKEQQVL----------------LPFMSPAQHVAEDYRTTSLSLKAHPVGFFREDL 959

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +MG            G  + +  +V+ +Q+  T KG  + ++T  +         +
Sbjct: 960  NRMGAVRCGTLKDARGGRRLSVGGLVLVRQRPGTAKG--VVFLTLEDETGIANIVVW 1014


>gi|58583062|ref|YP_202078.1| DNA polymerase III alpha chain [Xanthomonas oryzae pv. oryzae
            KACC10331]
 gi|71151846|sp|Q5GX78|DNAE2_XANOR RecName: Full=Error-prone DNA polymerase
 gi|58427656|gb|AAW76693.1| DNA polymerase III alpha chain [Xanthomonas oryzae pv. oryzae
            KACC10331]
          Length = 1083

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 262/1047 (25%), Positives = 452/1047 (43%), Gaps = 87/1047 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + +   G++
Sbjct: 46   PTYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEASRVTGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                      VLLV  A GY ++  LV+        K +
Sbjct: 106  LIVGSEFTLIDG----------------TRFVLLVENAHGYPQVCGLVTTAR-RAASKGA 148

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+  + ++    +         +  +   +       AE+     +++FG+R ++ ++ 
Sbjct: 149  YRLGRADVEAQFRD--------VAPGVFALWLPGVQPQAEQGA-WLQQVFGERAFLAVEL 199

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D   R   +  LA    +  VA+ +       +    D L A+ H T+   +    
Sbjct: 200  HREQDDGARLQVLQALAQQLGMTAVASGDVHMAQRRERIVQDTLTAIRH-TLPLAECGAH 258

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +  +     R+            L+  V +A+RC+F +   +   PR +  E        
Sbjct: 259  LFRNGERHLRTRRALGNIYPDALLQAAVALAQRCTFDISKISYTYPRELVPEG----HTP 314

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR    AG+  R   G  A        R+ ++ EL +IA  K+  +FL V D +++A
Sbjct: 315  TSYLRQLTEAGIRKRWPGGITA------KVREDIEKELALIALKKYEAFFLTVQDVVRFA 368

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++ NI    GRGS A S   YAL IT ++P    LL  RFL+  R   PD D+DF  +RR
Sbjct: 369  REQNIL-CQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFEHERR 427

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L            
Sbjct: 428  EEVLQYVYRKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGETP 487

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              Q I +        LA+P ++++L +++ L    RH S H  G VI D PLS LVP+  
Sbjct: 488  MEQRIEE----AGFDLANPLINKILLVTEHLRDHPRHLSQHVGGFVISDEPLSLLVPVEN 543

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
               +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P +D 
Sbjct: 544  AAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRDYSIATLPGEDL 603

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 604  PTYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGDMVHPYLRR 663

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-E 723
            + G+E +    P ++ +LK T GV ++QEQVM++    + Y+ SEAD LRR+M    +  
Sbjct: 664  RQGREDVSYPSPAVEDILKPTLGVPLFQEQVMELLMHAADYTESEADNLRRSMAAWRRGG 723

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +M++ + R        G + T    IFE +  F  YGF +SHAA++A + Y + W+K H 
Sbjct: 724  DMEQHRMRVRERMQGKGYASTFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRHE 783

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQD-----ARQFNIQIMPPSVNTPCVDFKVGDN----- 833
            P  F    +  +        +  QD       +  ++++P  V     D  +        
Sbjct: 784  PAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVVHSDWDNTLVGGRPWRS 843

Query: 834  --------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                     I   +  + G+    A+ I+ A   + F  + D C R     L+ +   +L
Sbjct: 844  AADPGEQPAIRLGMRQVAGLSDVVAQRIVAARTQRAFADIGDLCLRA---ALDEKACLAL 900

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              AGAL     +R     ++  ++     +                   S +     F  
Sbjct: 901  AEAGALQGMVGNRNAARWAMAGVEARRPLL-----------------PGSPEERPVAFEA 943

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             ++      + R +G     HP+ + +P +R+  I G  +      G+ + +A +V  +Q
Sbjct: 944  PHAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRDLQGRPHGSGVHVAGLVTQRQ 1003

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  T KG+   +VT  +         +
Sbjct: 1004 RPATAKGT--IFVTLEDEHGMINVIVW 1028


>gi|289667318|ref|ZP_06488393.1| error-prone DNA polymerase [Xanthomonas campestris pv. musacearum
            NCPPB4381]
          Length = 1083

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 266/1047 (25%), Positives = 453/1047 (43%), Gaps = 87/1047 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + +   G++
Sbjct: 46   PAYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEASRVTGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                      VLLV  A GY +L  L++        K +
Sbjct: 106  LIVGSEFTLVDG----------------TRFVLLVENAHGYPQLCALITTAR-RAASKGA 148

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+  + ++    +  + L       +   +   +   AE+      ++ G+R ++ ++ 
Sbjct: 149  YRLGRAEVEAQFRD--VALG------VFALWLPGAQPQAEQGA-WLHQVLGERAFLAVEL 199

Query: 189  HRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D     QV+Q LA    +  +A+ +       +    D L A+ H T+        
Sbjct: 200  HREQDDAARLQVLQVLAQQLGMTALASGDVHMAQRRERIVQDTLTAIRH-TLPLADCGAH 258

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +  +     R+            L+  VE+A+RC+F L   +   P+ +  E        
Sbjct: 259  LFRNGERHLRTRRALGNIYPDALLQAAVELAQRCTFDLSKISYTYPKELVPEG----HTP 314

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR    AG+  R   G  A        R+ ++ EL +IA  K+  +FL V D +++A
Sbjct: 315  TSYLRQLTEAGIRKRWPCGISA------KVREDIEKELALIALKKYEAFFLTVQDVVRFA 368

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++ NI    GRGS A S   YAL IT ++P    LL  RFL+  R   PD D+DF  +RR
Sbjct: 369  REQNIL-CQGRGSSANSAVCYALDITAVNPHETRLLMARFLSEKRDEPPDIDVDFEHERR 427

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV NKYG ER A   T    + K+A+RDV +A  +P  Q+  L            
Sbjct: 428  EEVLQYVYNKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGETP 487

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              Q I +        LA+P ++++L +++ L    RH S H  G VI D PLS LVP+  
Sbjct: 488  MEQRIEE----AGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPLSLLVPVEN 543

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
               +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P DD 
Sbjct: 544  AAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRDYSIATLPGDDL 603

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 604  PTYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGDMVHPYLRR 663

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-E 723
            + G+E +    P ++ +LK T GV ++QEQVM++    + Y+ SEAD LRR+M    +  
Sbjct: 664  RQGREDVNYPSPEVEDILKPTLGVPLFQEQVMELLMHAADYTESEADNLRRSMAAWRRGG 723

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +M++ + R        G +      IFE +  F  YGF +SHAA++A + Y + W+K H 
Sbjct: 724  DMEQHRARVRERMQGKGYASIFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRHE 783

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQD-----ARQFNIQIMPPSVNTPCVDFKVGDN----- 833
            P  F    +  +        +  QD       +  ++++P  V     D  +        
Sbjct: 784  PAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVLHSDWDNTLVGGRPWRS 843

Query: 834  --------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                     I   +  + G+    A+ I+ A   + F  + D C R     L+ +   +L
Sbjct: 844  DDDPGEQPAIRLGMRQVAGLSEVVAQRIVAARRQRAFADIGDLCLRA---ALDEKARLAL 900

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              AGAL     +R     ++  ++     +                   S +     F  
Sbjct: 901  AEAGALQGMVGNRNAARWAMAGVEARRPLL-----------------PGSPEERPVAFEA 943

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
              +      + R +G     HP+ + +P +R+  I G  E      G+ + +A +V  +Q
Sbjct: 944  PRAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRELQGRSHGSGVHVAGLVTQRQ 1003

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  T KG+   +VT  +         +
Sbjct: 1004 RPATAKGT--IFVTLEDEHGMINVIVW 1028


>gi|254500463|ref|ZP_05112614.1| DNA polymerase III, alpha subunit subfamily, putative [Labrenzia
            alexandrii DFL-11]
 gi|222436534|gb|EEE43213.1| DNA polymerase III, alpha subunit subfamily, putative [Labrenzia
            alexandrii DFL-11]
          Length = 1130

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 248/1057 (23%), Positives = 450/1057 (42%), Gaps = 80/1057 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P++  L   +++S L GA     ++ + A  Q  A+ I D N++   +     A  
Sbjct: 7    ITEPPAYAELCAATNFSFLHGASHPEELVLQGAHLQLAALGICDRNSMAGVVRAHMAAKE 66

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G++ + GC+L                     P ++        Y  L  L++      +
Sbjct: 67   TGLKFVPGCRLAF---------------LDGKPDLLYWPKDRGAYGTLTRLLTIGNRRAE 111

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K +  + L  +         +L  GS   +             K L   K  F   L +
Sbjct: 112  -KGACHLTLDDVS--------LLCPGSPAALILPPGLPDPDPVLKVLEKLKSRFEGTLRL 162

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +  HR   DR R +    + +T  +P++A N++L+ + +     DVL  +     +   
Sbjct: 163  AVALHRKAEDRRRLALARNITHTAGVPMLAINDTLYHAPDRRPLQDVLTCIRLHERLETA 222

Query: 244  DRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R  +   + +LK   E++ +F   P  L  +++I +   F L            +E   
Sbjct: 223  GRQLQQNAERHLKPAEEILRLFESDPAPLHESLKILQEVQFSLDDLRY----EYPEEPAG 278

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                 + EL    + G + R  +G           R  +D EL ++A + ++ YFL V D
Sbjct: 279  ESASPQAELERLTLEGAKRRYPEGV------PNKIRSTIDHELKLVADLDYAPYFLTVYD 332

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A+   I    GRGS A SV  + L IT++DP R  LLFERF++P+R   PD D+DF
Sbjct: 333  IVRFARTRGIL-CQGRGSAANSVVCFCLGITEVDPTRADLLFERFISPERREPPDIDVDF 391

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+EVI+Y+  KYG ER     T  + ++++ALR+VG+   +    +  L   +   
Sbjct: 392  EHERREEVIQYIYAKYGRERAGLAATVITYRSRSALREVGKVFGLSEDAIASLAGTVWGR 451

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
             +            R      +DP + ++LE+++ L G  RH S H  G VI    L ++
Sbjct: 452  ASAGTE----EAQVREAGLDPSDPLITQMLELARTLIGFPRHLSQHVGGFVITRGRLDEV 507

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLI 601
            +P+      D  V +++   ++  G++K D L L  LT ++K+L       G  + +S I
Sbjct: 508  IPIQNAAMEDRTVVEWDKDDLDALGILKIDILALGMLTAIRKALTMLSENYGQDLTISTI 567

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P ++   Y +L    ++G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V+
Sbjct: 568  PAEEKPVYDMLCRADSVGVFQVESRAQMTMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVH 627

Query: 662  N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                R+ GKE++      ++ +L +T GV ++QEQ M+IA + +G++  EAD LRRAM  
Sbjct: 628  PYLRRRQGKERVSYPSKELEAVLGKTMGVPLFQEQAMKIAIVAAGFTPGEADKLRRAMAT 687

Query: 720  KIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
              +   +   + + I G +KNG  +  A   F  +  F +YGF +SHAA++A++ Y ++W
Sbjct: 688  FRRVGTIGTFQTKMIEGMAKNGYDRDFAERCFRQIEGFGEYGFPESHAASFALLVYASSW 747

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831
            +K +YP  F AA +  +        +  +DAR+  + +    +N    D K+        
Sbjct: 748  IKAYYPDVFCAALLNSQPMGFYAPGQLVRDAREHGVDVREVDINLSDWDAKLEPGWQAAR 807

Query: 832  ---------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
                           D+ +      +KG+       ++    D  +DS+ D   R     
Sbjct: 808  HLHPRHREMKEIVRTDHAVRLGFRTVKGLKQDDMDKLIVHRGDG-YDSIRDLWLR---SG 863

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            L+R V+  L  A A    G  R   + +   ++   Q            +F         
Sbjct: 864  LSRPVILRLAEADAFRSLGLDRRAAVWAAQGLEAGNQRDR-------LPLFDVADFGDLR 916

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
                              + + L      HP+   +P L    +          +G  + 
Sbjct: 917  PEPDADLPPMLPGAHVMADYQSLSLSLKAHPVAFARPALAGQRVVPCMNLPDVRQGRQVS 976

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +A +V+ +Q+  + KG  + ++T  +         +P
Sbjct: 977  VAGLVLVRQRPGSAKG--VIFLTLEDEGGIANIIVWP 1011


>gi|295692868|ref|YP_003601478.1| DNA polymerase iii, alpha subunit [Lactobacillus crispatus ST1]
 gi|295030974|emb|CBL50453.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus ST1]
          Length = 1035

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 324/1024 (31%), Positives = 529/1024 (51%), Gaps = 44/1024 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL     +++++        P + + D N  +  + F + A  AGI+P++G 
Sbjct: 6    LQNISSFTLLSSPTKVSDLIKDAKEKGYPVVGLADVNVTYGLVNFYELAKKAGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
            QL ++          G         +++   T +GY  L+ L S + L  + G+    + 
Sbjct: 66   QLRLN----------GLVDSTQKYDLLVFAKTNKGYHNLLRLSSAVNLLTENGQNDKVLT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            L+ L +   + LI++       +  A    +  +    +   KKL  D LY+ +   +  
Sbjct: 116  LNELTKYLDDLLIIVPANLKSEL-MALHDTNQALGSDYVRQLKKLTSD-LYLGVYASKAS 173

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPD 251
              Y    V  LA   EL LVA  +S +L   +      L A+A    +       +    
Sbjct: 174  IDYI-DYVRGLAKQFELSLVAVEDSQYLRPREQFLQKTLRAIAKGDKLQDILPLAKQAGS 232

Query: 252  HYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            HYL +   ++  +   DL +A+ NT +IA++C+  +    P+LP++ +    D     E 
Sbjct: 233  HYLDSAQNVLECYHQYDLDDAINNTWKIAQKCNAEVIFQKPVLPKYHQ----DKFPTSEE 288

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR  A  GL+ R  Q +I       +Y++RL++EL VI +M F  YFLIV D I +  +
Sbjct: 289  YLRYLAQTGLQARFGQKSI-----PAEYQKRLNYELRVINQMGFDDYFLIVWDVINYCHR 343

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  GPGRGS  GS+ +Y+L IT++DP++++LLFERFLNP R  MPD D+D    +R+ 
Sbjct: 344  VKITTGPGRGSACGSLVSYSLRITEVDPIQYNLLFERFLNPARHEMPDIDLDIPDIQRNT 403

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+  KYG +  AQI+TFG++ AK  LRDVGR   +   ++ +    IP         
Sbjct: 404  VIKYMYQKYGMDHAAQILTFGTMAAKQVLRDVGRVFGLTGPEITKWTHAIPYSKDKMELK 463

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +A  +    R    A P    L + +  LEGL RH S HAAG+VI D  ++ +  +    
Sbjct: 464  KAYQESRELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDDSIAGISGLQ-AG 522

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
               +PVTQ   K++E  GL+K DFLGL+ LT+L   L  + Q+GVK+D + IP +D +T 
Sbjct: 523  PFGIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILALVRQQGVKLDPNTIPLNDPKTM 582

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T  +FQ ES G+R  L  + PD  ED++A+ +LYRPGP+ NI  +  RKNG  
Sbjct: 583  ELFQQGKTDAVFQFESGGIRGVLRKLHPDNFEDLVAVNALYRPGPMQNIDAFVARKNGTA 642

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK +  +++++
Sbjct: 643  TVHYPDPSLKQILQSTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKNQNVIEQER 702

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             +FI+G  K G  K +   ++  + +FA+YGFN+SHA AY  I++  A++K HYP  F  
Sbjct: 703  GKFIAGTVKKGHPKEVGERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPAAFYT 762

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +        K + +   A++  ++I+PP +N   +D+ + D +I   L AIKG+    
Sbjct: 763  AMLN--SSTSAKAQSYSMQAQEAGVRILPPDINHSQLDYTLQDGKILVGLKAIKGLRLDF 820

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A+ I  A+  KP+ S  DF  R+D+K L    +E+L+ AGA D    +R +LL +  ++ 
Sbjct: 821  AKEI--AANTKPYKSFNDFLRRIDAKFLQVDAIEALIMAGAFDSIEDNRNELLLNCKDVI 878

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               Q   +N      ++             L+      ++ + E E++ LGF  +  PL 
Sbjct: 879  ANVQLTGQN-----MSL-----SEILGDAPLKPAEPPTAAQKAEMEEKALGFTTTTTPLI 928

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K   +   +      G ++     ++  +Q +T+ G  + + +F++ + E E 
Sbjct: 929  AVQKYAQKFNARPLNQFQLNDSGISV---GKLMKLKQIRTKNGKTMAFASFADTSSEQEI 985

Query: 1030 NFFP 1033
              FP
Sbjct: 986  IIFP 989


>gi|190893936|ref|YP_001980478.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652]
 gi|190699215|gb|ACE93300.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CIAT 652]
          Length = 1152

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 254/1087 (23%), Positives = 451/1087 (41%), Gaps = 103/1087 (9%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-- 62
            ++   +F  +   +++S LEGA S   ++ + A  +   + I D N++   +    +A  
Sbjct: 1    MKGERAFFEIGARTNFSFLEGASSPEEMVLQAAYLRLGGLGIADRNSVAGVVRAHAQAEQ 60

Query: 63   -------------------CAAGI-QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
                                  GI  PI      I     L  +          P I+  
Sbjct: 61   IEERYKNRDAILAEAEKTGKKEGIFHPI-----RIQPGARLVFS-------DDTPDILAY 108

Query: 103  VSTAEGYQRLIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                 G+  L  L+S   L ++  K S  +  + L E G E ++ L    +    +A   
Sbjct: 109  PCNRRGWANLCRLLSAGNLKEEAVKGSCILTEAELMEWGDEMMLALVADRTLVESQA--- 165

Query: 162  NSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFL 220
                  E  L  F++ F   L++ L   + G DR   + +  LA  + +PL+ATN  L+ 
Sbjct: 166  -GQTALEDYLERFRRRFRKALFMVLAPAYDGRDRQVFAVLAMLAARNRVPLIATNQPLYH 224

Query: 221  SEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
              E     DV++A+     +           + YLK+  EMV IF D P+A+ENT     
Sbjct: 225  HPERRPLSDVVIAIREHVQISQAGFLLAPNAERYLKDSREMVRIFGDYPDAVENTQVFFG 284

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
            + SF L+              +D  +  +  L     AG   R  QG            +
Sbjct: 285  KLSFSLKELQHNY-----PSENDPGETPQETLERLTRAGAAKRYPQGV------PSKVAK 333

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            ++D+EL ++    ++ YFL V   IQ A+ +   +  GRGS A SV  Y L IT++DP +
Sbjct: 334  QIDYELKLVGDKNYASYFLTVHRIIQHARYDLKVLCQGRGSAANSVICYCLEITEVDPQK 393

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
             +LLF+RF++ DR   PD D+DF  DRR+EVI+++  +YG +         + + ++A R
Sbjct: 394  STLLFDRFISMDRDEPPDIDVDFEHDRREEVIQFIYRRYGIDHAGLTAGVTTYRTRSAGR 453

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            +V +A  +       +  L+       +S      D++     + DP    +L+ + +L 
Sbjct: 454  EVAKAFGLSEDVQSAISSLVWGWSEDNLS----ERDAKAAGLDVKDPVTQNVLQYASELL 509

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            G  RH + H  G VI    L ++VP+ +    D  + +++   ++   ++K D L L  L
Sbjct: 510  GFPRHLTQHVGGFVITRDRLDEVVPIMKTAMPDRYMIEWDKDDLDNVKILKVDVLALGML 569

Query: 580  TLLQKSLDFLAQRGVKVDL------SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            T L+K+   L                    +    Y ++    TLG+FQ+ES      L 
Sbjct: 570  TCLRKAFSLLELHYDVKKTLADLGNREHGDEGKPVYEMMGRADTLGVFQIESRAQMSMLP 629

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYN-----NRKNGKEKIVSIHPLIDPMLKETQGV 688
             ++P    D++  V++ RPGPI   +V+       ++     I      ++ +L+ T GV
Sbjct: 630  RLKPKIFYDLVIEVAIVRPGPIQGDMVHPYLKRREQRARNIPIEYPSKELEAVLERTLGV 689

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAV 747
             ++QEQ MQIA   +G+  +EAD LRRAM    +   +   ++RFI G          A 
Sbjct: 690  PLFQEQAMQIAITAAGFRPAEADKLRRAMATFKRTGTIGDFEKRFIEGMVSKDYEPEFAK 749

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
              F  +  F +YGF +SHAA++A++ Y ++W+K +YP  F AA +  +        +  +
Sbjct: 750  QCFNQIKGFGEYGFPESHAASFALLVYASSWLKAYYPDVFCAAMLNSQPMGFYAPAQLVR 809

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGD----------------------NRIYYSLAAIKGV 845
            DAR+  ++I+   +N    D  + +                      + +      IKG+
Sbjct: 810  DAREHGVRILAVDINESEWDCTLEEAVFDRKTVDFRHGQMREIIKTRHAVRLGFRQIKGL 869

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
             +   + ++       + S+ D   R     L + V+E L  A A      SR + L ++
Sbjct: 870  SSDDMKRLVGNRGQG-YGSVRDLWLR---SGLPKSVIERLADADAFRSIHLSRREALWAV 925

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
              +       +     +   +F   +          K        +   + R L      
Sbjct: 926  RAL-------DVKSAAEELPLFEQVRHIDLQPEPAAKLPDMLPGEQVIEDYRYLSLSLKA 978

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+   +  LRK GI    + ++   G  + +A +V+ +Q+  + KG  + ++T  +   
Sbjct: 979  HPVSFLREELRKAGITRNVDLLSVPNGKRVTIAGLVLVRQRPGSAKG--VIFMTLEDETG 1036

Query: 1026 EYEANFF 1032
               A  +
Sbjct: 1037 VANAIVW 1043


>gi|84624896|ref|YP_452268.1| DNA polymerase III alpha chain [Xanthomonas oryzae pv. oryzae MAFF
            311018]
 gi|84368836|dbj|BAE69994.1| DNA polymerase III alpha chain [Xanthomonas oryzae pv. oryzae MAFF
            311018]
          Length = 1065

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 262/1047 (25%), Positives = 452/1047 (43%), Gaps = 87/1047 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + +   G++
Sbjct: 28   PTYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEASRVTGVR 87

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                      VLLV  A GY ++  LV+        K +
Sbjct: 88   LIVGSEFTLIDG----------------TRFVLLVENAHGYPQVCGLVTTAR-RAASKGA 130

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+  + ++    +         +  +   +       AE+     +++FG+R ++ ++ 
Sbjct: 131  YRLGRADVEAQFRD--------VAPGVFALWLPGVQPQAEQGA-WLQQVFGERAFLAVEL 181

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D   R   +  LA    +  VA+ +       +    D L A+ H T+   +    
Sbjct: 182  HREQDDGARLQVLQALAQQLGMTAVASGDVHMAQRRERIVQDTLTAIRH-TLPLAECGAH 240

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +  +     R+            L+  V +A+RC+F +   +   PR +  E        
Sbjct: 241  LFRNGERHLRTRRALGNIYPDALLQAAVALAQRCTFDISKISYTYPRELVPEG----HTP 296

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR    AG+  R   G  A        R+ ++ EL +IA  K+  +FL V D +++A
Sbjct: 297  TSYLRQLTEAGIRKRWPGGITA------KVREDIEKELALIALKKYEAFFLTVQDVVRFA 350

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++ NI    GRGS A S   YAL IT ++P    LL  RFL+  R   PD D+DF  +RR
Sbjct: 351  REQNIL-CQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFEHERR 409

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L            
Sbjct: 410  EEVLQYVYRKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGETP 469

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              Q I +        LA+P ++++L +++ L    RH S H  G VI D PLS LVP+  
Sbjct: 470  MEQRIEE----AGFDLANPLINKILLVTEHLRDHPRHLSQHVGGFVISDEPLSLLVPVEN 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
               +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P +D 
Sbjct: 526  AAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRDYSIATLPGEDL 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 586  PTYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGDMVHPYLRR 645

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-E 723
            + G+E +    P ++ +LK T GV ++QEQVM++    + Y+ SEAD LRR+M    +  
Sbjct: 646  RQGREDVSYPSPAVEDILKPTLGVPLFQEQVMELLMHAADYTESEADNLRRSMAAWRRGG 705

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +M++ + R        G + T    IFE +  F  YGF +SHAA++A + Y + W+K H 
Sbjct: 706  DMEQHRMRVRERMQGKGYASTFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRHE 765

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQD-----ARQFNIQIMPPSVNTPCVDFKVGDN----- 833
            P  F    +  +        +  QD       +  ++++P  V     D  +        
Sbjct: 766  PAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVVHSDWDNTLVGGRPWRS 825

Query: 834  --------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                     I   +  + G+    A+ I+ A   + F  + D C R     L+ +   +L
Sbjct: 826  AADPGEQPAIRLGMRQVAGLSDVVAQRIVAARTQRAFADIGDLCLRA---ALDEKACLAL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              AGAL     +R     ++  ++     +                   S +     F  
Sbjct: 883  AEAGALQGMVGNRNAARWAMAGVEARRPLL-----------------PGSPEERPVAFEA 925

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             ++      + R +G     HP+ + +P +R+  I G  +      G+ + +A +V  +Q
Sbjct: 926  PHAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRDLQGRPHGSGVHVAGLVTQRQ 985

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  T KG+   +VT  +         +
Sbjct: 986  RPATAKGT--IFVTLEDEHGMINVIVW 1010


>gi|289661570|ref|ZP_06483151.1| error-prone DNA polymerase [Xanthomonas campestris pv. vasculorum
            NCPPB702]
          Length = 1083

 Score =  555 bits (1431), Expect = e-155,   Method: Composition-based stats.
 Identities = 266/1047 (25%), Positives = 452/1047 (43%), Gaps = 87/1047 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + +   G++
Sbjct: 46   PAYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEASRVTGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                      VLLV  A GY +L  L++        K +
Sbjct: 106  LIVGSEFTLVDG----------------TRFVLLVENAHGYPQLCALITTAR-RAASKGA 148

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+  + ++    +  + L       +   +       AE+      ++ G+R ++ ++ 
Sbjct: 149  YRLGRAEVEAQFRD--VALG------VFALWLPGVQPQAEQGA-WLHQVLGERAFLAVEL 199

Query: 189  HRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D     QV+Q LA    +  +A+ +       +    D L A+ H T+        
Sbjct: 200  HREQDDAARLQVLQVLAQQLGMTALASGDVHMAQRRERIVQDTLTAIRH-TLPLADCGAH 258

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +  +     R+            L+  VE+A+RC+F L   +   P+ +  E        
Sbjct: 259  LFRNGERHLRTRRALGNIYPDALLQAAVELAQRCTFDLSKISYTYPKELVPEG----HTP 314

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR    AG+  R   G  A        R+ ++ EL +IA  K+  +FL V D +++A
Sbjct: 315  TSYLRQLTEAGIRKRWPCGISA------KVREDIEKELALIALKKYEAFFLTVQDVVRFA 368

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++ NI    GRGS A S   YAL IT ++P    LL  RFL+  R   PD D+DF  +RR
Sbjct: 369  REQNIL-CQGRGSSANSAVCYALDITAVNPDETRLLMARFLSEKRDEPPDIDVDFEHERR 427

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV NKYG ER A   T    + K+A+RDV +A  +P  Q+  L            
Sbjct: 428  EEVLQYVYNKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGETP 487

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              Q I +        LA+P ++++L +++ L    RH S H  G VI D PLS LVP+  
Sbjct: 488  MEQRIEE----AGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPLSLLVPVEN 543

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
               +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P DD 
Sbjct: 544  AAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRDYSIATLPGDDL 603

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 604  PTYKMIQRADTVGVFQIESRAQMAMLPRLKPAEFYDLVIEVAIVRPGPIQGDMVHPYLRR 663

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-E 723
            + G+E +    P ++ +LK T GV ++QEQVM++    + Y+ SEAD LRR+M    +  
Sbjct: 664  RQGREDVNYPSPEVEDILKPTLGVPLFQEQVMELLMHAADYTESEADNLRRSMAAWRRGG 723

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +M++ + R        G +      IFE +  F  YGF +SHAA++A + Y + W+K H 
Sbjct: 724  DMEQHRARVRERMQGKGYASIFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRHE 783

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQD-----ARQFNIQIMPPSVNTPCVDFKVGDN----- 833
            P  F    +  +        +  QD       +  ++++P  V     D  +        
Sbjct: 784  PAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVLHSDWDNTLVGGRPWRS 843

Query: 834  --------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                     I   +  + G+    A+ I+ A   + F  + D C R     L+ +   +L
Sbjct: 844  DDDPGEQPAIRLGMRQVAGLSEVVAQRIVAARRQRAFADIGDLCLRA---ALDEKARLAL 900

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              AGAL     +R     ++  ++     +                   S +     F  
Sbjct: 901  AEAGALQGMVGNRNAARWAMAGVEARRPLL-----------------PGSPEERPVAFEA 943

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
              +      + R +G     HP+ + +P +R+  I G  E      G+ + +A +V  +Q
Sbjct: 944  PRAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLRELQGRSHGSGVHVAGLVTQRQ 1003

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  T KG+   +VT  +         +
Sbjct: 1004 RPATAKGT--IFVTLEDEHGMINVIVW 1028


>gi|311694224|gb|ADP97097.1| error-prone DNA polymerase [marine bacterium HP15]
          Length = 1039

 Score =  555 bits (1431), Expect = e-155,   Method: Composition-based stats.
 Identities = 251/1029 (24%), Positives = 438/1029 (42%), Gaps = 57/1029 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S+++ L GA   + + ++       A+AITD  ++            + ++ I
Sbjct: 6    YAELFCFSNFTFLTGASHPHELAERAHELGYTALAITDACSVAGIPRAWAALAESPVKLI 65

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G   ++                 T P  +LL  T +GY +L +L++      + K   +
Sbjct: 66   TGSWFELS----------DAPAGATQPRFILLARTRKGYGQLCQLITTGRRRAE-KGHYQ 114

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
            +    ++       + L    S           S  A        +LF  R+++   R  
Sbjct: 115  LFYRDIETHTLNDCLCLWLPPSP------TEADSDQALACGEWLARLFDPRIWIAAARTL 168

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +  R +++  LA    +P+ A       S E     DVL A+ + T +         
Sbjct: 169  ESGEEQRLARIHWLADQLRIPVAAVGEVHMHSRERQPLQDVLTALRNHTNLENAGHCLFQ 228

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                      ++          E     ++            L      +     +    
Sbjct: 229  NGERYLRPLPVLQRLFPEAWLHETLAIASQCT-----FEPGSLRYEYPPDLVPEGETPAG 283

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L+     G   R   G           +  +  EL +I+ M +  YFL + D + +A+ 
Sbjct: 284  YLKRLTREGERRRYPDG------TPLQVQSLIRKELGLISEMNYEHYFLTIHDIVDFARS 337

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A S   Y L IT+++P R  LLFERF++ DR   PD D+DF  +RR+E
Sbjct: 338  RGIL-CQGRGSAANSAVCYCLGITEVNPARVELLFERFISKDRNEPPDIDVDFEHERREE 396

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+  +Y  ER A   T    + K+A+RDVG+AL    + V++L + I          
Sbjct: 397  VIQYIYRRYTRERAALAATVIRYRPKSAIRDVGKALGFDPALVEQLLEGIDWRDKATNWR 456

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            Q I D    R  ++AD     +      L G  RH S H  G VI   PL++LVP+    
Sbjct: 457  QQILDKKITRNPQVADQFFTLVNT----LLGFPRHLSQHVGGFVISAGPLAELVPVENAA 512

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHET 608
             +D  V Q++   +E  GL+K D L L  L+ ++K+L+ ++ ++G    +  IP +D +T
Sbjct: 513  MTDRTVIQWDKDDLESLGLMKVDVLALGMLSAIRKALELISDEKGQPFRIQDIPQEDRDT 572

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKN 666
            Y +L T  ++G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V+    RK+
Sbjct: 573  YAMLQTGDSIGVFQVESRAQINMLPRLKPETYYDLVIEVAIVRPGPIQGDMVHPYLRRKH 632

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEEM 725
            G E +   +  +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM       ++
Sbjct: 633  GLEPVDYPNDAVRKVLERTLGVPIFQEQVIKLAMVAAGFSAGEADQLRRAMAAWKSHGDL 692

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
               +E+ ++G  + G     A  +++ +  F  YGF +SHAA++A++ Y +AW+K HYP 
Sbjct: 693  TPFREKLVTGMLERGHDADFAERLYQQICGFGGYGFPESHAASFALLVYVSAWIKRHYPA 752

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIYYSLAAIK 843
             F  A +  +        +  QDAR+ N+ ++PP VN    D  +   +  +   L  I+
Sbjct: 753  AFYCALLNSQPMGFYSPSQLVQDARRHNVTVLPPDVNASQWDHTLQGENRHLRLGLRIIQ 812

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            G+    A  I +    + + S  +         LN+R +E L  A A+  F  +R Q   
Sbjct: 813  GLSVYGAERIHQNRPAEGYRSASELRR---LAALNQRDMELLAGANAMPGFTANRHQAYW 869

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             L + ++  +            +FA E          E+    +       +    G   
Sbjct: 870  QLLDHEQPTE------------LFAEETAVDYQPDYCEQLPEPSEGQNVLADYASQGLTL 917

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
              HPL + +           E+  +T  G  +++A +V  +Q+  +  G  + +VT  + 
Sbjct: 918  QRHPLALLRDQGHLKFCLSAEQLKSTKAGIPVQVAGLVTGRQRPGSASG--VTFVTLEDE 975

Query: 1024 AKEYEANFF 1032
                    +
Sbjct: 976  TGNVNVVVW 984


>gi|320527694|ref|ZP_08028866.1| putative DNA polymerase III DnaE [Solobacterium moorei F0204]
 gi|320131937|gb|EFW24495.1| putative DNA polymerase III DnaE [Solobacterium moorei F0204]
          Length = 1021

 Score =  555 bits (1431), Expect = e-155,   Method: Composition-based stats.
 Identities = 325/1026 (31%), Positives = 508/1026 (49%), Gaps = 50/1026 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL V S Y+LL+  + +  ++         ++A+TD + +     F  +    GI PII
Sbjct: 3    THLFVRSCYTLLDSTIRIPELVSTAKKYGYQSVALTDHHVMHGVARFLHECKKEGIHPII 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++D+   +                  +LL    +GY  L++L S   L D  +    +
Sbjct: 63   GLEVDVFYHEQKVP-------------FLLLAKNNKGYTNLMKLSS--MLCDGREY---V 104

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190
                L +   E   ++  G  G  D            ++L   K  F     + +     
Sbjct: 105  TYEELIQY-CEHNFLVVYGEGGYFDAELISEDRTGITQKLALMKSEFPP-FDIAISYEET 162

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
               R + + +  LA    +  +A N   +L ++DYE   VL A+   T +  K+   +T 
Sbjct: 163  SLWRSKNAVLKALAKAQGIQTIALNKIYYLGQKDYETLKVLSAIKQGTTLRDKNVTPITG 222

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             ++L          +D    L  T EIA  C     +    +P +  K+        E  
Sbjct: 223  RYFLSIPEMEQIYDADD---LRRTDEIASECHCDGNLEKTGIPEYPLKDG----ITAEQY 275

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L    +AGL+ RL       G     Y +RL +EL VI +M F  YFLIV DFI++ ++ 
Sbjct: 276  LPQLCLAGLKKRL------NGDLKPAYVERLKYELQVIHQMGFEDYFLIVYDFIRYGRQK 329

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I +GPGRGS AGS+ AY L IT +DPL+++LLFERFLN +R+SMPD D D     R E+
Sbjct: 330  GIYIGPGRGSAAGSLVAYCLGITMVDPLQYNLLFERFLNAERVSMPDIDTDIPDIHRQEI 389

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I YV  KYG + +A IITF +L ++A LRDVG+A+ +P  ++D +  LIP  P   +   
Sbjct: 390  IDYVYQKYGEQHIANIITFDTLASRAVLRDVGKAMDIPKREIDMIVGLIPQTPKITLKKA 449

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                  + R    A P +     +++++EGL ++ S HAAGIV+  +P+ +++P  + + 
Sbjct: 450  -YEQKEKLRVLLNASPQLMTYFNMAKRIEGLPKNKSIHAAGIVMSGKPIEEIIPTIQ-MA 507

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
              +  TQF   ++E+ GLIK DFLGLK LT + + +  + ++     +  IP  D +TY 
Sbjct: 508  EGMKTTQFVGNYLEERGLIKMDFLGLKNLTTIDEIVQMIHKKNPDFHILSIPLHDAKTYR 567

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T+G+FQ ES GMR  L  M+P+C EDIIA ++L+RPGP D I VY   +     
Sbjct: 568  LFAQADTIGVFQFESDGMRNLLRKMKPNCFEDIIAALALFRPGPKDQINVYLEGRKNPSS 627

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +V     ++P+LKET GV IYQEQVM +AQ+ + +SL +AD+LR+A+ KK +EE+   ++
Sbjct: 628  VVYPSKELEPILKETYGVTIYQEQVMLMAQIAAKFSLVKADILRKAISKKNEEELAGLRQ 687

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             ++ G  +NG S  +A  +F+L  KFA YGFNKSHA AY +++YQ A++K +YP+EF  +
Sbjct: 688  EYVRGCKENGYSDEMASYLFDLAEKFAGYGFNKSHAVAYGLVAYQLAYLKANYPLEFYTS 747

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +   + +  K   +  + R+ +I I  P VN     +      I   L+ IK VGT  A
Sbjct: 748  ILNSVIGDSTKSAIYITECRRKHISIEAPDVNRSTDIYYHNGKSIILPLSIIKDVGTLAA 807

Query: 851  RHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            R I++       F    DF +R   +K+NR  LE L+ AGALD F   R  ++ +LD+  
Sbjct: 808  RTILDERDKKGSFGDYFDFVARAVLRKINRTQLERLISAGALDGFDLGRTTMMNTLDDAV 867

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE--NSSVRFENEQRVLGFYFSGHP 967
            KYA+ V           F  +       ++         +     ENE+  LGF     P
Sbjct: 868  KYAKLV-------QVP-FGTQLSIDPQLVSKPVVVRMKDSQEELSENEKAALGFNLGEQP 919

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            +   +  L  +      E  +       R  A + S +Q +TRKG  + ++  ++   E 
Sbjct: 920  IVHLRQKL-GITYPPLAELNSNR--GLYRGFAYIQSVRQIRTRKGDLMCFLKLTDETGES 976

Query: 1028 EANFFP 1033
            +    P
Sbjct: 977  DMAVMP 982


>gi|163746772|ref|ZP_02154129.1| DNA polymerase III, alpha subunit [Oceanibulbus indolifex HEL-45]
 gi|161379886|gb|EDQ04298.1| DNA polymerase III, alpha subunit [Oceanibulbus indolifex HEL-45]
          Length = 1109

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 245/1054 (23%), Positives = 436/1054 (41%), Gaps = 88/1054 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V   + S +S L  A    ++++        ++ I D N L   +    +A  A I+P+
Sbjct: 25   YVEFGLASCFSFLRAASDAVDLVETAHYHGYDSLGIADHNTLAGVVRLHVEAEKAHIRPL 84

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-----QG 125
            IG +L +                     ++        Y RL  L+S   +       Q 
Sbjct: 85   IGARLVLLCG----------------TELLAYPQDRAAYARLSTLLSAGKMQSVDGEWQQ 128

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            K    + L  L +   EGL ++               +  V    L    K      +V 
Sbjct: 129  KGETHLTLEMLAQ-HAEGLHLIVMPPE----------NLDVFAAGLPRLVKALPGMRHVG 177

Query: 186  LQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-K 243
                +RG DR R +++  LA    L ++ATN+ L+ +       DV++A+    +V +  
Sbjct: 178  ASFLYRGDDRARINRLDALARAQGLTILATNDVLYHARHRRPLQDVMVAIREGVIVPKAG 237

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                   + +LK+   M  +F+D P A+  T  +A R +F L   A   P  I  E    
Sbjct: 238  YLLEANAERHLKSPEAMCRLFADWPHAIAATRRLADRITFKLTDLAYEYPHEIVPEG--- 294

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +    EL      G   R   G        +   + +  E  +I   K + YFL + D 
Sbjct: 295  -RTPMEELSRLTWEGAARRYPDGV------PEAVEKTIHKEFALIESKKIARYFLTIYDI 347

Query: 364  IQWAKKNNIPV--GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            +++A+++  P     GRGS A S   + L IT +DP   +LLFERFL+ +R   PD D+D
Sbjct: 348  VRFARQDAQPPILCQGRGSAANSAVCFCLGITSVDPAVHNLLFERFLSEERDEPPDIDVD 407

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+EVI+Y+  KYG  R     T    + ++A+R+VG+A+ +      +L   I  
Sbjct: 408  FEHERREEVIQYMYGKYGRHRAGLCATVIHYRPRSAIREVGKAMGLSEDVTSKLAGTIWG 467

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                    Q   + +R     L+DP +  +L +++++ G+ RH S H  G ++ +RPL++
Sbjct: 468  ----SFEGQMDDERTREAGLDLSDPYLRMVLTLAKQMIGMPRHLSQHVGGFILTERPLTE 523

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
            +VP+      +    +++   I+   + K D L L  LT + K  D +     +      
Sbjct: 524  IVPIGNGAMPERSFIEWDKDDIDALQIFKVDILALGMLTCIAKCFDLIEAHYDRPLELAT 583

Query: 597  ---DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
               +          TY +L    +LG+FQ+ES      L  ++P    D++  V++ RPG
Sbjct: 584  VPVEDHEDDATGRPTYDMLCRGDSLGVFQVESRAQMAMLPKLRPRVFYDLVIEVAIVRPG 643

Query: 654  PIDNIVVYNNRKNGKEK---------IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            PI   +V+   +  +                  +  +L  T GV I+QEQ M+I+   + 
Sbjct: 644  PIQGDMVHPYLRRRQGMESVVYPAPGPAYPQDELFSILSRTLGVPIFQEQAMKISIDAAQ 703

Query: 705  YSLSEADVLRRAMGKKI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            +S +EA+ LR+AM     +  ++K +++ +   +K G     A   F+ +  F +YGF +
Sbjct: 704  FSPTEANELRKAMATFRSRGTIEKLQDKMVGRMTKRGYDPVFAQRCFDQIKGFGEYGFPE 763

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAA++A + Y ++WMK HYP  F  A +  +        +  +DAR+  +++    VN 
Sbjct: 764  SHAASFAKLVYVSSWMKCHYPAAFACALLNSQPMGFYAPAQIVRDAREHQVEVRGVDVNL 823

Query: 824  PCVDFKVG----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
               +  +        +   L  + G+    A  IM+     P+  +ED  +R     L+ 
Sbjct: 824  SDWNCTLEPCGEGFALRLGLRMVDGLQEKAAARIMDRRET-PYTDVEDLKTRA---GLDA 879

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            + +  L  A  +   G  R Q L     ++                IF H +        
Sbjct: 880  KAIRQLAAADTMRSMGIDRRQALWQSQGLRDAPA----------LPIFDHAEAASQGPEP 929

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
                 V   + +   + + L      HP+  Y+  L   G     +      G  ++LA 
Sbjct: 930  EVTLPVMPKAEQVVADYQTLRLSLKAHPMSFYRSSLAAQGFSSARDLGRMGHGRRVKLAG 989

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +V+ +Q+  + KG  + ++T  +         +P
Sbjct: 990  LVLVRQKPGSAKG--VCFITLEDECGVANLVIWP 1021


>gi|57867208|ref|YP_188839.1| DNA polymerase III, alpha subunit [Staphylococcus epidermidis RP62A]
 gi|81819374|sp|Q5HNK2|DPO3A_STAEQ RecName: Full=DNA polymerase III subunit alpha
 gi|57637866|gb|AAW54654.1| DNA polymerase III, alpha subunit [Staphylococcus epidermidis RP62A]
          Length = 1065

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 327/1026 (31%), Positives = 523/1026 (50%), Gaps = 85/1026 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI 
Sbjct: 3    AHLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +        T             V+L    +G + L +L S + + ++      +
Sbjct: 63   GMTIYLTDGLYTIET-------------VVLAKNNQGLKSLYQLSSAIMMRNKE----EV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRH 189
             + WL+    E LI++                 + AE         F     LY+    H
Sbjct: 106  PIEWLKRY-DEHLIII----------------FKEAELSHKQVIDAFEGKKELYL---NH 145

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +     +            V   ++ +L+E+D E    L A+  +T +         
Sbjct: 146  NSNNTLTGKR------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKETL 193

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +H+           S+    + N  EI   C   +  H  +LP+F+    +      ++
Sbjct: 194  DEHFPSIEELQTLNLSEDM--ITNANEIEELCQAEIAYHQSLLPQFVTPNGE----TSKD 247

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L    +  L               + Y  RL  E  +I  M F  YFLIV+D I +AK 
Sbjct: 248  YLWTILIHRLREWELND--------KTYFNRLKHEYKIITDMGFEDYFLIVSDLIHFAKT 299

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD DIDF   RR++
Sbjct: 300  HEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDIDIDFEDTRREK 359

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     +  
Sbjct: 360  VIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKLIPHKLGITLEE 419

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    F+     +   +R  E+S+KLEGL RH STHAAGI+I D+PL +  P+    
Sbjct: 420  AYQK--PEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQPLFKFAPLTTGD 477

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHET 608
                 +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  IP+DD + 
Sbjct: 478  TG--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINIDIEAIPYDDKKV 535

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++  
Sbjct: 536  FDLLSNGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEISTYITRRHNP 595

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             ++  +HP ++P+LK T GVIIYQEQ+M IA  ++G+S  EAD+LRRAM KK +  ++ +
Sbjct: 596  NQVAYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAMSKKNRAILESE 655

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            ++ FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F 
Sbjct: 656  RQHFIDGAKNNGYDEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFY 715

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            A  ++  + + +K      +A+   I I+PP++N     +K  +  IY SL  IKG+G  
Sbjct: 716  ANILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYLSLGTIKGIGYQ 775

Query: 849  TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            + + I++    + P+    DF  R+  +  NR++LESL+  GA D FG +R  LLQ++D 
Sbjct: 776  SVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGKTRATLLQAIDQ 835

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +      VE++       +F       + K + E+       +  + E+  LGFY S HP
Sbjct: 836  VLDLNSDVEQDEM-----LFDL----LTPKQSYEEKEELPDQLLSDYEKEYLGFYISKHP 886

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            ++       K    G  +         I +       +Q +T+ G  + +VT ++     
Sbjct: 887  VE---KKFEKKQYLGIFQLSNGSHYQPILV--QFDHIKQIRTKNGQNMAFVTMNDGRTMM 941

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 942  DGVIFP 947


>gi|73662373|ref|YP_301154.1| DNA polymerase III alpha chain [Staphylococcus saprophyticus subsp.
            saprophyticus ATCC 15305]
 gi|72494888|dbj|BAE18209.1| DNA polymerase III alpha chain [Staphylococcus saprophyticus subsp.
            saprophyticus ATCC 15305]
          Length = 1067

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 325/1024 (31%), Positives = 522/1024 (50%), Gaps = 78/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H++Y LL  ++ + +++ K A +   A+AITDTN L+   +F     AA I PI 
Sbjct: 3    AHLNIHTTYDLLNSSIRIKDVVAKAAQEGYTALAITDTNVLYGLPQFYDACIAANIHPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  +++    +   T             ++L     G + L +L S + +    K+ V  
Sbjct: 63   GMTINLTDGLSELET-------------IVLAQNNLGLKDLFKLSSAIKM----KEKVET 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             + WL++  +  +I              F N ++  E  +  F +     ++V    H+ 
Sbjct: 106  PIEWLKKYESHFVI-------------IFKNVTESHEAIISNFSEHA--HVFV---NHKS 147

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                          T +LP+V   ++ +L+ +D +    + A+  ++ +          +
Sbjct: 148  K------------VTFDLPIVWAQSTRYLNSQDSDTLSAMAAIKENSKLDLVSEQTDYNE 195

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            H   N         D      N +E   +   I           + K     Q++ +  L
Sbjct: 196  HLYSNVELQGLSIDDAVWEQTNQLETLCQAEMI------YHQSLLPKYKTPNQQQSDAFL 249

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                   L     Q         + Y+ RL+ E  +I +M F  YFLIV+D IQ+AK N+
Sbjct: 250  WQLLADNL-----QQLNLPLNKKELYQTRLEHEYQIITKMGFEDYFLIVSDLIQYAKNND 304

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDP+ ++LLFERFLNP+R++MPD DIDF    RD+VI
Sbjct: 305  VLVGPGRGSAAGSLVSYLLNITTIDPIEYNLLFERFLNPERVTMPDIDIDFEDTHRDKVI 364

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ KYG   VA I+TFG L A+A  RDVGR +      ++ + KLIP+     +    
Sbjct: 365  QYVQEKYGETHVAGIVTFGHLLARAVARDVGRIMGFEEITLNEISKLIPHKLGITLDDAY 424

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
              +   F++    +   +R  +I +KLEGL RH STHAAGI+I D PL +  P+      
Sbjct: 425  SQEP--FKQFVHRNHRHERWFDICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTLGDTG 482

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + +  +     + VD+  IPFDD   +H
Sbjct: 483  --LLTQWTMTESERIGLLKIDFLGLRNLSIIHQIVKQVKHDLNIDVDIEQIPFDDENVFH 540

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y +R++  EK
Sbjct: 541  LLSQGDTTGIFQLESDGIRNVLKKLQPEHFEDIVAVTSLYRPGPMEEIPTYISRRHHPEK 600

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++
Sbjct: 601  VQYLHPDLEPILKTTYGVIIYQEQIMQIASKFANFSYGEADILRRAMSKKNRAVLESERQ 660

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++GA KNG  + ++  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HY   F A 
Sbjct: 661  HFVNGALKNGYDENLSKQIFDLILKFADYGFARAHAVSYSKIAYIMSYLKVHYANYFYAN 720

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + + +K  +   +A+   I I+PP++N     +K     IY S+ AIKGVG  + 
Sbjct: 721  ILSNAIGSEKKTAQMIDEAKHQKINILPPNINYSHWFYKATKKGIYLSIGAIKGVGYQSV 780

Query: 851  RHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I+E    +  +    DF  R+  +   R++LESL+  GA D FG +R  LL ++D + 
Sbjct: 781  KLIVEERKANGFYKDFFDFTRRIPKRIKTRKLLESLILVGAFDTFGKNRATLLNAIDQVL 840

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 +E++                + K + E+       V  E E+  LGFY S HP++
Sbjct: 841  DDISDIEQD---------GFIFDVLTPKASYEEKEELPDHVLSEYEKEYLGFYVSTHPVE 891

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                   +    G  +         I +   V   ++ +T+ G  + +VT ++     + 
Sbjct: 892  ---KAFEQKQYLGIYKLANAQDNKPIFV--QVDQFKRIRTKNGQNMAFVTLNDGINNLDG 946

Query: 1030 NFFP 1033
              FP
Sbjct: 947  VVFP 950


>gi|126651370|ref|ZP_01723577.1| DNA polymerase III DnaE [Bacillus sp. B14905]
 gi|126591899|gb|EAZ85982.1| DNA polymerase III DnaE [Bacillus sp. B14905]
          Length = 1020

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 342/1021 (33%), Positives = 533/1021 (52%), Gaps = 48/1021 (4%)

Query: 17   HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN-LFSALEFSQKACAAGIQPIIGCQL 75
            H+S  LL+  + L  ++  +   +  A AI   N  L+  L F +    A I  +IG  +
Sbjct: 2    HTSADLLKSTIRLEQLIPFLQEQKTQACAI--VNTKLYGLLPFCKAMQQANIHAVIGLSI 59

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            ++   D                 +VL   + EGYQ L+++ S + + +       +   W
Sbjct: 60   NVQWHD-------------KTFPLVLYAQSQEGYQHLLKISSAVSIREDE----VLPWKW 102

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY 195
            L+      L +L+    G +         +  +  +     LF    Y+ + R  G  + 
Sbjct: 103  LKGYAAGCLALLSSDDIGDV---------KDWQALVSALAHLFQHHFYMGITRPGGVTQA 153

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
             E ++++      +PLVA  +  FL  +D+ A++V  A+     +           ++  
Sbjct: 154  NEKELIEWCEGQAIPLVAVQSCYFLRPDDHFAYEVARAIDTGDKLGDTMLTANLQGYFAP 213

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
               E  S F+D PE LE+  ++   C  I+   +  +P+F     +      E+ L  +A
Sbjct: 214  TAQEWQSWFADRPEWLESCGQMLASCHAIIPEMSVQMPKFPVPVGE----TAESLLVKEA 269

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
             AGLE R  Q  I  G     YR+RL +EL +I  M ++ YFL+VADF+++AK N I  G
Sbjct: 270  FAGLEGRFNQMDIPNG-----YRERLQYELEIICSMGYADYFLVVADFMRFAKDNRILTG 324

Query: 376  PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
            PGRGS AGS+ AY+L IT +DPL + LLFERFLNP+R+S+PD DIDF   +R +VI+YV 
Sbjct: 325  PGRGSSAGSLVAYSLAITQVDPLAYGLLFERFLNPERISLPDIDIDFVDSKRHQVIQYVA 384

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
             KYG   V QIITFG+L AKA  RDV R        ++++ K+IPN P   +  +A+ + 
Sbjct: 385  QKYGKANVGQIITFGTLSAKAVARDVARVFSFGAETLEKISKMIPNKPGITL-QKALEES 443

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
               +     D    R  +++ KLEGL R++STHAAG+VI   PL   VP+  D    +  
Sbjct: 444  YDLQGWLSEDEQHQRWFDVALKLEGLPRNSSTHAAGVVIAPSPLVNTVPIE-DGHEGIYC 502

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTT 614
            TQ+ M  IE  GL+K DFLGL+ LT+L++         G  +D   IP  D +T+ LL  
Sbjct: 503  TQWPMGDIEACGLVKMDFLGLRNLTILEQMRWSIYKAGGPWIDFERIPMHDEKTFQLLQK 562

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
              T GIFQLES GM+QAL  + P    DI A+ +LYRPGP++ I VY  RK GKE +V  
Sbjct: 563  GDTSGIFQLESEGMKQALRDIHPTHFLDIAAVNALYRPGPMEFIPVYAKRKAGKEMVVMP 622

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            HP+++P+L+ET GVI+YQEQ+++IA +L+G+S+ +AD+LRRA+ KK ++ +++Q+  F+ 
Sbjct: 623  HPVLEPILQETFGVIVYQEQIIKIASVLAGFSMGQADLLRRAVSKKNRQVLEEQQVSFVQ 682

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            GA K G  + +A  ++EL+ +FADYGF KSHA AY+VISYQ A++K H+P  F AA ++ 
Sbjct: 683  GALKQGYDQQVATEVYELIVRFADYGFPKSHAVAYSVISYQMAYLKAHFPQSFYAALLSN 742

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
               N++KI++  Q+A+   I   PPS+      F V    I YSL+ IKGV  T   +I 
Sbjct: 743  ATGNIDKIQQLVQEAKDKGIPFYPPSLKDSTKYFTVEQEGIRYSLSGIKGVPHTFIENIH 802

Query: 855  EASADKPFD--SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
                  P    +L D    + ++    +V+E+L++AGALD     R  L+ ++D   K+A
Sbjct: 803  TLRQSNPLALHNLFDLAVALSAQHFKPKVIEALIYAGALDYLEKDRAVLIMTIDAALKHA 862

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
            + +            +        K    +        +  +E+  LGFY S HP+   +
Sbjct: 863  ELLRPTEDIDI----STATEFSFGKPKYMQVDDMPQKEKLMHEKESLGFYISAHPVTQER 918

Query: 973  PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 +      E      G  +++  ++   ++ +T+KG ++ +V   +      A  F
Sbjct: 919  LYWADVNS-TCRELKQMRDGTYVKMIGVIEEVKKIRTKKGEQMAFVQLQDEHGAVSATLF 977

Query: 1033 P 1033
            P
Sbjct: 978  P 978


>gi|114798985|ref|YP_761161.1| putative DNA polymerase III subunit alpha [Hyphomonas neptunium ATCC
            15444]
 gi|114739159|gb|ABI77284.1| putative DNA polymerase III, alpha subunit [Hyphomonas neptunium ATCC
            15444]
          Length = 1087

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 257/1045 (24%), Positives = 446/1045 (42%), Gaps = 79/1045 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++  L V +++S L+GA   + ++ + A     AI I D N L   +     A  AG++ 
Sbjct: 3    AYAELAVTTNFSFLQGASHAHELVRRAADLGHVAIGIADRNTLAGVVRAHVAAKEAGLRL 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++G +L                     P I+        Y RL  L+S+  +    K   
Sbjct: 63   LVGARL----------------VPADGPEIIAYPMNRAAYGRLSRLLSKGKMRAA-KGEC 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QR 188
             I +S + +  +EG I +             F  +      L    +    R Y+     
Sbjct: 106  HITVSDILK-ASEGQIFIVMPPE---ALCLPFGRT------LDEIARAAPGRTYLAARYT 155

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-HSTVVSQKDRPR 247
            + G +R R  ++ +LA    + L+ATN+ L+ + E     DVL  +  H T+ +      
Sbjct: 156  YSGRNRERIFRLAELAARAGVALMATNDVLYHAPERRPLQDVLTCIREHHTLDTAGFLLE 215

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + +LK  +EM  +F     ++  TVEI+ RC F L   A   P              
Sbjct: 216  ANGERHLKGGAEMARLFKGFESSVARTVEISERCRFSLDELAYEYPDEPVPPG----STP 271

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L      G   R   G        +   +++  EL +I ++ ++ YFL V D +QWA
Sbjct: 272  QEHLERLTWEGASGRYPGGV------PEKVERQIRDELRIIDQLSYAPYFLTVNDIVQWA 325

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  NI    GRGS A S   Y L IT IDP    LLF RFL+P+R   PD D+DF  +RR
Sbjct: 326  RSQNIL-CQGRGSAANSAICYCLGITSIDPTLTKLLFARFLSPERKEPPDIDVDFEHERR 384

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+YV  +YG  R A   T  S ++++A+R+V +AL +       L   +    +  +
Sbjct: 385  EEVIQYVYRRYGQHRAALTATVISYRSRSAIREVCKALGLSDDISAALANGVWGSWSDTL 444

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                IA+         A+P + R ++++++L G  RH S H  G V+    L + VP+  
Sbjct: 445  PDNRIAE----AGLDPANPLIRRAVQLARQLLGFPRHLSQHVGGFVLTRGDLIETVPIGN 500

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDH 606
                D    +++   I+  G++K D L L  LT ++K+ D L +       L+ +  +D 
Sbjct: 501  AAMRDRTFIEWDKDDIDALGIMKVDVLSLGMLTCIRKAFDLLTEHKNTLHTLASVEQEDR 560

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             TY +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+   + 
Sbjct: 561  ATYDMLCKGDSIGVFQVESRAQMAMLPRLRPRTYYDLVIEVAIVRPGPIQGNMVHPYLRR 620

Query: 667  GK--EKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             K  E +    P         ++ +L  T GV ++QEQ MQIA   + +S  EA+ LRRA
Sbjct: 621  RKGIEAVSYPRPSPDQGPPDELESILSRTLGVPLFQEQAMQIAIDAARFSADEANGLRRA 680

Query: 717  MGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M        + + +E  +S   K G     A + F+ +  F +YGF +SHAA++A++ Y 
Sbjct: 681  MATFRNVGTIHQYEEMLVSNLIKRGYDPVFAKSCFDQIKGFGEYGFPESHAASFALLVYV 740

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-- 833
            ++W+K H+P  F AA +  +        +  +DA+   +++ P  VN    D  +  +  
Sbjct: 741  SSWIKCHHPDVFCAALLNSQPMGFYAPAQIVRDAQAHGVEVRPVDVNYSDWDNILEPDER 800

Query: 834  -----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  +      + G+       +M       +++ +     +   +L R VLE L  A
Sbjct: 801  ASGSFAVRLGFRQVDGLNREDMERLMVRRGTG-YETPD---RLMQHAQLTRSVLERLAAA 856

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
             A      +R + L            V      +   +FA    +     T     V   
Sbjct: 857  DAFGSMSLTRREALW----------KVRGEAPQQTLPLFATAGLSEQGSETGITLPVIPP 906

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
            S     + +  G    GHP+   + +  + G+    ++     G  ++ + +V+ +Q+  
Sbjct: 907  SEHVIQDYQTTGLSLKGHPMHFLRSLHARRGVLSTHDAARLPNGCRVQTSGIVLVRQRPG 966

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            T  G  + ++T  +         +P
Sbjct: 967  TASG--VVFITLEDETGIANLVVWP 989


>gi|330428421|gb|AEC19755.1| DNA polymerase III alpha subunit [Pusillimonas sp. T7-7]
          Length = 1039

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 260/1039 (25%), Positives = 437/1039 (42%), Gaps = 71/1039 (6%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
              P++  L   S++S L+GA     ++ + A     A+A++D  +L   +    +A    
Sbjct: 2    NPPTYAELDCISNFSFLQGASHPEELVQRAAQLGYEALALSDECSLAGVVRAWTEAKKQR 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+ IIG +  +D                    I++L  T  GY  L EL++        K
Sbjct: 62   IKLIIGSRFKLD-----------------GMHIIILARTLNGYGNLSELITLAR-RSCDK 103

Query: 127  QSVRICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
               ++ L  +     G E L  +       I +  +  S    +  +   ++ F  RL++
Sbjct: 104  GQYQLSLQNILAPSSGHEHLAHMPDCL--VIFKPGYGASMSELDTHIPLLQQAFPGRLWL 161

Query: 185  NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             L  H  Y D    + +   A   +L LVAT             HD + A+     V   
Sbjct: 162  GLSLHHQYADAQHLATLQAAAERFDLKLVATGQVQMHVRSRQPMHDTITAIRLKQTVQDC 221

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     +       ++      +AL  T+ ++R C+F L+      P+ I       
Sbjct: 222  GYALQANAEHYLRGRLRLANI-YPEQALRETLFLSRLCTFELKEIQYQYPKEITPAGM-- 278

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                 + LR +  AG   R  +G  A+       + +L+ EL +IA +++  YFL V + 
Sbjct: 279  --TPSSYLRQETFAGAHRRYPKGVSAQL------KSQLESELAIIAGLQYEPYFLTVYEI 330

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+ ++I    GRGS A S   Y L IT++DP   + LF RF++  R   PD D+DF 
Sbjct: 331  VRFARSHDIL-CQGRGSAANSAVCYCLGITEVDPENGNALFARFISQARKEPPDIDVDFE 389

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RR+EVI+++  KYG +R A      + ++++ LRD G+AL +    +D++ K      
Sbjct: 390  HQRREEVIQHIYKKYGRDRAALTAVVSTYRSRSVLRDTGKALGLDIELIDKVAKSFHYWS 449

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                 L+ IA+            +      +++ L G  RH S H  G VI    L +LV
Sbjct: 450  GKQSLLEKIAEH----GLDANARTAQMWAGLAETLMGFPRHLSQHPGGFVIAHDSLYRLV 505

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIP 602
            P+      +  V Q++   ++  GL+K D L L  L+ LQ+ L    A+RG    +  I 
Sbjct: 506  PIENAAMPERSVVQWDKDDLDAMGLLKVDILALGMLSALQRCLKLVSARRGQAFAMQNIE 565

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD ET+ ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+ 
Sbjct: 566  SDDAETFAMIQRADTIGVFQIESRAQMSMLPRLKPKVFYDLVVQVAIVRPGPIQGGMVHP 625

Query: 663  NRKNGKEKIVSIH---PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
              +  +          P I  +L+ T GV I+QEQ MQIA + + +S  EAD LRR+M  
Sbjct: 626  YLRRRQGVEDCDDSPTPEIAKVLERTLGVPIFQEQAMQIAMVAANFSADEADELRRSMAA 685

Query: 720  K-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
               K  +D  ++R I G   NG  +  A +IF  L  F +YGF +SH+A++A ++Y +AW
Sbjct: 686  WRRKGGVDAFRDRLIQGMINNGCPEDFAKSIFRQLEGFGEYGFPESHSASFAKLAYISAW 745

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------ 832
            +K H P  FL A +  +        +  QDAR+  + ++P  +     +  +        
Sbjct: 746  LKCHEPEAFLTALLNSQPMGFYLPNQLVQDARRHQVVVLPSDIMISRWEAGLEPLGNSKR 805

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              +   L  IKG+    A  I  A   + F  ++D   R D   LNR  +++L  A AL 
Sbjct: 806  PAVRLGLNQIKGLSEAAALRIECARKQQAFSCVQDLAVRAD---LNRSAMDALAAANALH 862

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                 R Q           A    +             +      +     S        
Sbjct: 863  ALSGHRRQARWQ------AASQTFQ----------GLLRNAPIIDLLPPSLSAPTEGQSI 906

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            +++ + LG     HPL + +  L+                   R   +V  +Q+ +T KG
Sbjct: 907  KSDYQSLGLTLGRHPLALLRSTLQTRQFTQASTLNTYPDRRLARACGIVTGRQRPQTAKG 966

Query: 1013 SRIGWVTFSEPAKEYEANF 1031
              + +VT  +         
Sbjct: 967  --VIFVTLEDETGNVNVIV 983


>gi|118589570|ref|ZP_01546975.1| DNA polymerase III, alpha subunit, putative [Stappia aggregata IAM
            12614]
 gi|118437656|gb|EAV44292.1| DNA polymerase III, alpha subunit, putative [Stappia aggregata IAM
            12614]
          Length = 1129

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 261/1060 (24%), Positives = 443/1060 (41%), Gaps = 76/1060 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS-------QKA 62
             +  L V S++S L GA     ++ + A     AIAITD N+L   +          + A
Sbjct: 16   RYAELAVTSNFSFLRGASHPEELVTRAAMLNLDAIAITDRNSLAGVVRAYSALKEIKRAA 75

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTV------------------PSIVLLVS 104
               G+Q  I     ID     +       P P                       V L +
Sbjct: 76   AEEGVQ--IRSHSQIDTSSRKETNTSPPLPAPQTLKLPRLIVGARLCLQDSPLHWVALPT 133

Query: 105  TAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS 164
                Y+RL +L++      + K    +  + L     +G+I++    + P          
Sbjct: 134  DRAAYERLSQLLTLGKRRAE-KGECHLNFADLMN-ACKGMILI----ALPQPEMARETIC 187

Query: 165  QVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEE 223
            + A+  +   ++     +++    R+ G D+       + A++   P+VA  + +     
Sbjct: 188  ETAKDHIHRLRQEAPGHVFLGAAPRYDGTDQAWFRTCARAAHSLAAPMVAVGDVMMHHAG 247

Query: 224  DYEAHDVLMAVAHSTV-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
                 DVL  +           R     +  LK   +M  +F   P AL  T+EIA RCS
Sbjct: 248  RRRLADVLTCLREGCTIDDIGTRALPNGERRLKAPEDMARLFRHHPAALRRTLEIATRCS 307

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
            F L   +         +     +  +  L      GLE R   G         +      
Sbjct: 308  FDLSELSYEY-----PDEITGNEPPQERLERLTYEGLERRYPAGVPDHALALAE------ 356

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
             EL +I ++ F+ YFL V D I++A+  NI    GRGS A S+  YAL ITD+ P   ++
Sbjct: 357  KELKLIRKLAFAAYFLTVHDIIRFARSKNIL-CQGRGSAANSIICYALGITDVGPETITM 415

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            + ERF++  R   PD D+DF  +RR+EVI+YV  KYG  R     T    + +AA+R+VG
Sbjct: 416  VSERFISEHRGEPPDIDVDFEHERREEVIQYVYEKYGRHRAGLCATVIHFRTRAAIREVG 475

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            + + +       L   I    +       + +        L +P V + +E+ +++ G  
Sbjct: 476  KVMGLNADVTAALAGQIWGSSSKGPEETRMREI----GLDLDNPRVRQTIELIREIIGFP 531

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            RH S H  G VI    L  L P+      +  V +++   I+  G++K D L L  LT +
Sbjct: 532  RHLSQHVGGFVITQGRLDALCPIENAAMENRTVIEWDKDDIDALGILKVDLLSLGMLTCI 591

Query: 583  QKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            +K  +      G ++ L  +P  D +TY +L     +G+FQ+ES      L  M+P    
Sbjct: 592  RKCFELIDTHHGQELTLGTVPQADKKTYDMLCVADAIGVFQVESRAQMNFLPRMRPREFY 651

Query: 642  DIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            D++  V++ RPGPI   +V+   NR+ G+EK+      ++ +L +T GV ++QEQ MQIA
Sbjct: 652  DLVIEVAIVRPGPIQGGMVHPYINRRQGREKVTFPSKALEEVLGKTLGVPLFQEQAMQIA 711

Query: 700  QLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
             + +G++ SEAD LRR+M    +   + + K++FISG  + G     A N F  +  F +
Sbjct: 712  VVAAGFTPSEADKLRRSMATFRRMGTIGQLKDKFISGMLERGYELEFAQNCFGQIEGFGE 771

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            YGF +SHAAA+A+++Y +A++K H+P EF  A +  +        +  +DAR+  +++ P
Sbjct: 772  YGFPESHAAAFAMLAYVSAYLKCHFPAEFACALLNAQPMGFYAPAQIVRDAREHQVEVRP 831

Query: 819  PSVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
              VNT   D  +         +      IKG+    A  I+ A  +  +   E    R  
Sbjct: 832  VCVNTSLWDNTLERRSDGALALRLGFRQIKGLREEDAAWIVAARGNG-YPDTETLWLRTG 890

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
                    LE L  A A    G SR   L  +  I          R+ K   +F      
Sbjct: 891  VMP---TTLERLAEADAFAGMGLSRRAALWQVKTI----------RSPKPLPLFNDPIDG 937

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
             +           +       +          HP+++ +P +  +       ++      
Sbjct: 938  EAIFEPDVLLPTMHLGQEVVEDYLSTRLTLRAHPMELLRPHIPHLTPHDRLAALTPREAR 997

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + +  +V+++Q+  T  G  + ++T  +         +P
Sbjct: 998  RVSVCGLVITRQRPGTASG--VIFLTLEDETGVSNVVVWP 1035


>gi|84514485|ref|ZP_01001849.1| DNA polymerase III subunit alpha [Loktanella vestfoldensis SKA53]
 gi|84511536|gb|EAQ07989.1| DNA polymerase III subunit alpha [Loktanella vestfoldensis SKA53]
          Length = 1101

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 260/1050 (24%), Positives = 441/1050 (42%), Gaps = 86/1050 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FV L V + +S L GA    ++     +     I   D N +   +     A  AGI P
Sbjct: 25   DFVELGVATCFSFLRGASDAVDLAVTAHSLGYDKIGCADLNTMAGVVRLHAAALKAGITP 84

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG---- 125
            +IGC+L +   +                  +        Y RL  L+S+  + D G    
Sbjct: 85   VIGCRLQLVSGEAF----------------LAYPRDRASYGRLCALLSKGKMRDAGGGWQ 128

Query: 126  -KQSVRICLSWLQEIGTE-GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             K +  I L  L     +  LI + G                   + L + + +    LY
Sbjct: 129  AKGACDISLDDLAAHAADVQLIAVPGTDLRHFAALLPR-----LVRALPSLRHVAASCLY 183

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQ 242
                  RG DR R + +  LA  + L ++ATN+  + + +     DV+  + H T +   
Sbjct: 184  ------RGDDRARINALDALARRYGLSILATNDVHYHAPDRRPLQDVMTCIRHKTTIAKA 237

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                    + +LK+ ++M  +F+D P A+  T ++A   +F L+  A   P     E   
Sbjct: 238  GFLLDANAERHLKSPAQMARLFADWPHAIRATRDVADASTFDLRDLAYEYPHETVPEG-- 295

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +  +  L      G   R   G  A        +  L  EL +IA++    YFL + +
Sbjct: 296  --RSPQEYLEELTWKGAAARYPDGVPA------ALQATLRKELALIAKLDIPQYFLTIHE 347

Query: 363  FIQWAKKNNIPV--GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             I +A+    P     GRGS A S   Y L IT +DP +  LLFERF++ +R   PD D+
Sbjct: 348  IIDFARNQCKPPILCQGRGSAANSAVCYVLGITAVDPAKNDLLFERFISEERKEPPDIDV 407

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EVI+++ NKYG  R A   T    + + A+R+VGR + +       L K I 
Sbjct: 408  DFEHERREEVIQHIYNKYGRNRAALCATVIHYRPRMAVREVGRVMGLSEDVTTALAKTIW 467

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                  +     A+        L DP + R + ++ ++ G+ RH   H  G ++ ++ L+
Sbjct: 468  GSWGREIGAAQAAE----AGIDLRDPLMARTIRLADQMIGMPRHLGQHVGGFILTEKALT 523

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
            + VP+      D    +++   I++  ++K D L L  LT ++K+ D +A     + DL+
Sbjct: 524  ETVPIGNGAMPDRSFIEWDKDDIDELRILKVDVLALGMLTCIRKAFDLIAAHHGKRFDLA 583

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +P +D   Y +L    +LG FQ+ES      L  ++P    D++  V++ RPGPI   +
Sbjct: 584  TVPQEDPAVYDMLCKGDSLGTFQVESRAQMNMLPRLKPRAFYDLVIQVAIVRPGPIQGDM 643

Query: 660  VYNNRKNGKEK---------IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            V+   +                     +  +L  T GV I+QEQ M+IA + + +S  EA
Sbjct: 644  VHPYLRRRSGAEVVEYPSPGPQYDPDELKKVLGRTLGVPIFQEQAMKIAMVAAEFSTKEA 703

Query: 711  DVLRRAMGKKI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            + LR+AM        +   +E+ +    + G     A   F  +  F DYGF +SHAA++
Sbjct: 704  NELRKAMATFRSHGTIGALEEKMVGRMIRRGYDPAFAARCFNQIKGFGDYGFPESHAASF 763

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A++ Y ++W+K HYP  F AA +  +        +  +DAR+  + +    VN    D  
Sbjct: 764  ALLVYISSWIKCHYPDVFCAALLNSQPMGFYAPAQIVRDAREHGVIVRAADVNYSDWDNS 823

Query: 830  VGD-----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            +         +   L  I G+    A+ IM+A   +PFD L+D  +R    KL+   ++ 
Sbjct: 824  LEPLAPGVFAVRLGLRQIDGMRRDMAQRIMDAR-GRPFDDLKDMKTRA---KLDAGTVQR 879

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-KGTFSDKITLEKF 943
            L  A AL      R Q L     ++                +FA         +  L + 
Sbjct: 880  LAAADALRSMMLDRRQALWDARALRDAPD----------LPLFADTRDEGAEVRFDLPQM 929

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
             V     +   + + L      HPL   +  + + G +   E      G  ++LA +V+ 
Sbjct: 930  PV---CEQVVADYQTLRLSLKAHPLAFLRRSMTRQGYRAAAELAQMRSGQPVKLAGVVLI 986

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +Q+  + KG  + ++T  +         +P
Sbjct: 987  RQRPGSAKG--VCFITLEDETGVANLVVWP 1014


>gi|15891704|ref|NP_357376.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58]
 gi|71151849|sp|Q8UAY9|DNE21_AGRT5 RecName: Full=Error-prone DNA polymerase 1
 gi|15160162|gb|AAK90161.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58]
          Length = 1091

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 277/1045 (26%), Positives = 462/1045 (44%), Gaps = 74/1045 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P +  LQV + +S L GA S + + ++       A+ + D N+L +     + A   G
Sbjct: 2    SAPRYAELQVTTHFSFLRGASSCDELFEQAKNLGIEALGVVDRNSLAAIPRAYEAANNHG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ +IGC+LD+D   ++ +                       Y RL  L+S +     GK
Sbjct: 62   VRLVIGCRLDLDDDLSVLV----------------YPMDRAAYGRLCRLLS-VGKKRGGK 104

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               R+    L   G EGLI++               +  +   RL   K  F DR Y+ L
Sbjct: 105  GKCRLSWDDLVAYG-EGLIVV----------LLADLADDLCALRLRRLKAAFADRAYMAL 153

Query: 187  Q-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KD 244
              R R  D+ R  ++  +A    +P V TN+ LF   E     DV+  + H+  + +   
Sbjct: 154  SLRRRPNDQMRLFELSGMAQAAGVPTVVTNDVLFHVPERRMLQDVVTCIRHNCTIDEAGF 213

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R     D Y+K   EM  +F+  PEAL  ++EIA+RC F L+      P           
Sbjct: 214  RRERHADRYMKPPEEMHRLFARYPEALSRSLEIAKRCKFSLKELVYQYPEERSLPG---- 269

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               +  L       +  R   G        +   + L  EL+V+ R++++ YFL V   +
Sbjct: 270  LTAQQALEKMVWEAVPGRYPNGL------PEKVEKALHHELDVVGRLQYASYFLTVNAIV 323

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF-SLLFERFLNPDRMSMPDFDIDFC 423
            ++A+  +I    GRGS A SV  + L IT IDP  F +L+FERF++ +R   PD D+DF 
Sbjct: 324  RYARSKDIL-CQGRGSAANSVICFVLGITAIDPALFSNLVFERFVSENRGEPPDIDVDFE 382

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RR+EVI++V + YG ++ A        + + ALRDVG+ L +P      L   +    
Sbjct: 383  HQRREEVIQWVYDTYGRDKAALCSVVTRYRGRGALRDVGKVLGLPEDLTKLLSSQVWRW- 441

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                S        +     + D  +    E++ +L G  RH S H  G V+    L +LV
Sbjct: 442  ----SEGVGEKQVKELNLNMEDRRLKLAFELANQLVGTPRHHSQHPGGFVLSHDRLDELV 497

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+     +D  + +++   I+    +K D L L  L+ +++  D L  R   K DL+ +P
Sbjct: 498  PIEPAAMNDRQIIEWDKDDIDIVKFMKMDCLALGMLSCMKRGFDLLEARTGEKYDLAAMP 557

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  T+ ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI   +V+ 
Sbjct: 558  PDDPATFAMIQKADTLGTFQIESRAQMSMLPRLKPAKFYDLVIQVAIVRPGPIQGDMVHP 617

Query: 663  --NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
               R+ GKE ++   P ++ +LK+T GV ++QEQ M+IA   + ++  EAD LRRAM   
Sbjct: 618  YLRRRQGKEPVLYEKPQLENILKKTLGVPLFQEQAMRIAMDCADFTADEADQLRRAMATF 677

Query: 721  IKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
                 + K KE+ ++G   NG  K  A  IF+ L  F  YGF +SHAA++A+I+Y ++W+
Sbjct: 678  KNVGTISKFKEKLVTGMVANGYDKEFAERIFKQLEGFGSYGFPESHAASFALIAYASSWL 737

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------ 833
            K H+P  F  A +  +        +  +DAR   +++ P  VN    D  +         
Sbjct: 738  KCHHPDIFCTAILNSQPMGFYAPAQIVRDARDHGVEVRPVCVNNSRFDCTLEPTGKKNDK 797

Query: 834  -----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  +   L  +KG+    A  I+ A  D+PF S++D   R     +    L  L  A
Sbjct: 798  GEERFAVRLGLRMVKGLSNDHAADIVAARQDRPFASVDDLWRRA---GVPAAALVCLAEA 854

Query: 889  GAL-DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
             A       +R + L ++  ++     +      +     A  +      + L   +   
Sbjct: 855  DAFLPSLRLARREALWAIKALRDEPLPLFAAAAIREN---AVIEELQEPSVALRPMTDGG 911

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
                   +   +G     HP+   +  L +  I    E+V    G  +  A +V+ +Q+ 
Sbjct: 912  E---VVQDYGHVGLTLREHPMTFLRRDLSRRRIVTCAEAVRVRDGTWLETAGLVLVRQRP 968

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             + KG  + ++T  +      A  +
Sbjct: 969  GSAKG--VIFMTLEDETGIANAVLW 991


>gi|71151845|sp|Q8PBL8|DNAE2_XANCP RecName: Full=Error-prone DNA polymerase
 gi|78099246|sp|Q4URY1|DNAE2_XANC8 RecName: Full=Error-prone DNA polymerase
          Length = 1082

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 265/1047 (25%), Positives = 452/1047 (43%), Gaps = 88/1047 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + + A G+Q
Sbjct: 46   PAYAELHCLSDFSFLRGASSAEQLFARAHHCGYSALAITDECSLAGIVRGLEASRATGVQ 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                      VLLV  A GY +L  +++       GK +
Sbjct: 106  LIVGSEFTLVDG----------------TRFVLLVENAHGYPQLCSVITTGR-RAAGKGA 148

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+  + ++    +   ++ G     +   +       AE+     +++F +R ++ ++ 
Sbjct: 149  YRLGRAEVEAHFRD---VVPG-----VFALWLPGDQPQAEQGA-WLQRVFAERAFLAVEL 199

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D   R   +  LA    +  +A+ +       D    D L A+ H T+        
Sbjct: 200  HREQDDAARLQALQALAQQLGMSALASGDVQMAQRRDRIVQDTLTAIRH-TLPLADCGAH 258

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +  +     R             L+ +VE+A+RC+F L       PR +  +        
Sbjct: 259  LFRNGERHLRPRRALGNIYPHALLQASVELAQRCTFDLSKVQYTYPRELVPQG----HTP 314

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR    AG+  R  +GA A+         ++D EL +IA   +  +FL V D +++A
Sbjct: 315  ASYLRQLTEAGMRERWPEGAPAQ------VVAQIDSELELIAYKGYEAFFLTVQDVVRFA 368

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I    GRGS A S   YAL IT ++P    LL  RFL+ +R   PD D+DF  +RR
Sbjct: 369  RAQGIL-CQGRGSSANSAVCYALGITAVNPSETRLLMARFLSKERDEPPDIDVDFEHERR 427

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L            
Sbjct: 428  EEVLQYVYTKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGDTP 487

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              Q IA+        LA+P ++++L +++ L    RH S H  G VI D PLS LVP+  
Sbjct: 488  MEQRIAE----AGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPLSMLVPVEN 543

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
               +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P +D 
Sbjct: 544  AAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRDYTIATLPGEDA 603

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 604  ATYKMIQRADTVGVFQIESRAQMAMLPRLKPREFYDLVIEVAIVRPGPIQGDMVHPYLRR 663

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-E 723
            + G E +    P ++ +L  T G+ ++QEQVM++  + +GY+ SEAD LRR+M    +  
Sbjct: 664  RQGYEPVSFPSPGVEEILGRTLGIPLFQEQVMELV-IHAGYTDSEADQLRRSMAAWRRGG 722

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +M+  + R     +  G +      IFE +  F  YGF +SHAA++A + Y + W+K H 
Sbjct: 723  DMEPHRVRIRELMAGRGYAPEFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRHE 782

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQD-----ARQFNIQIMPPSVNTPCVDFKVGDN----- 833
            P  F    +  +        +  QD       +  ++++P  V     D  +        
Sbjct: 783  PAAFACGLLNAQPMGFYSASQIVQDARRGSPERQRVEVLPVDVLHSDWDNILVGGRPWHS 842

Query: 834  --------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                     I   L  + G+       I+ A A +PF  + D C R     L+ +   +L
Sbjct: 843  DADPGEQPAIRLGLRQVSGLSEKVVERIVAARAQRPFADIGDLCLRA---ALDEKARLAL 899

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              AGAL     +R     ++  ++     +                   S      +   
Sbjct: 900  AEAGALQSMVGNRNAARWAMAGVEARRPLL-----------------PGSPAERAVELPA 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
              +      + R +G     HP+ + +P + +  I G  E  A   G+ + +A +V  +Q
Sbjct: 943  PRAGEEILADYRAVGLSLRQHPMALLRPQMLQRRILGLRELQARRHGSGVHVAGLVTQRQ 1002

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  T KG+   +VT  +         +
Sbjct: 1003 RPATAKGT--IFVTLEDEHGMINVIVW 1027


>gi|254472134|ref|ZP_05085534.1| DNA polymerase III, alpha subunit subfamily, putative [Pseudovibrio
            sp. JE062]
 gi|211958417|gb|EEA93617.1| DNA polymerase III, alpha subunit subfamily, putative [Pseudovibrio
            sp. JE062]
          Length = 1117

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 249/1054 (23%), Positives = 440/1054 (41%), Gaps = 80/1054 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              +  L   +++S L GA     I+          + + D N+L   +     A  A ++
Sbjct: 4    SGYAELCCATNFSFLRGASQPEEIVFTAKNIGLSGLGVCDRNSLAGVVRAHVAADTAELR 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             + G +L                     P I+      E Y RL  L++        K  
Sbjct: 64   MVTGVRLCFVDGS---------------PEILCWPIDREAYGRLTRLLTIGNRR-APKGE 107

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFKKLFGDRLYVNLQ 187
              + L  L   G   ++        PI        +    +  L     +FG ++ + + 
Sbjct: 108  CHLRLEDLLAQGPGFVVA-------PIMSRLENRTNLSALKTTLEALVAVFGQQVRLAVA 160

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
              +   DR    Q+++LA    L ++A N+ L+         D++  +     +    R 
Sbjct: 161  LTYGASDRRFLLQMMELADACGLNILAVNDVLYHEAARRPLQDIVSCIRLHETLESAGRK 220

Query: 247  RV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 + YLK   EM  +F D PEAL  ++ I    +F L       P+           
Sbjct: 221  LGANAERYLKTYEEMEQLFHDCPEALTESLRILDEINFSLSELRYDYPQEEIASG----L 276

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + EL   A  G ++R  +G        +  R+ + +ELN+I  + ++ YFL V D ++
Sbjct: 277  SPQQELARLAEEGAQIRYPEGV------PESVRESIAYELNLIEELDYAPYFLTVHDIVR 330

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  NI    GRGS A SV  + + IT++DP R  LLFERF++P+R   PD D+DF  +
Sbjct: 331  FARSRNIL-CQGRGSAANSVVCFCIGITEVDPKRAGLLFERFISPERKEPPDIDVDFEHE 389

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG ER     T  + ++++ALR+V +   +       L   I      
Sbjct: 390  RREEVIQYIYQKYGRERAGLAATVITYRSRSALREVAKVFGLSEDAAGALSGTIWGRS-- 447

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              S    A+  R       +  V ++L+ +++L G  RH S H  G VI    L ++VP+
Sbjct: 448  --SGGGNAEQVRDAGLDPQEAVVAQVLKYAKELIGFPRHLSQHVGGFVITQGRLDEVVPV 505

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
                  D    +++   +E  GL+K D L L  LT ++K+L  L +       ++ +P +
Sbjct: 506  MNAAMEDRTTIEWDKDDLESLGLLKIDVLALGMLTAIRKALVLLRKGYNQDWTIASLPEE 565

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662
            + E Y ++    TLG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+   
Sbjct: 566  EAEVYDMICRADTLGVFQIESRAQMSMLPRLRPRSFYDLVIEVAIVRPGPIQGDMVHPYL 625

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R+  KE +      +  +L +T GV ++QEQ M+IA + +G++  EAD LRRAM    +
Sbjct: 626  RRRQKKEAVNFPKEELRDVLGKTLGVPLFQEQAMKIAIVAAGFTPGEADRLRRAMATFRR 685

Query: 723  E-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               +   +++ ++G    G  K  A   F+ +  F +YGF +SHAA++A++ Y + W+K 
Sbjct: 686  VGTIKTFQDKMVNGMVARGYEKDFAERCFKQIEGFGEYGFPESHAASFALLVYASCWLKA 745

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------- 831
             YP  F AA +  +        +  +DAR+  + +    +N    D  +           
Sbjct: 746  RYPDVFCAAMLNSQPLGFYAPAQLVRDAREHGVDVREVDINLSSWDAVLEPDAQAWRRLH 805

Query: 832  ------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
                        D+ +     ++KG+       ++       +DS+ D   R     L+R
Sbjct: 806  PRHKEMQGTIKSDHAVRLGFRSVKGLAEADMEKLVAVRGRG-YDSVRDLWLRT---GLSR 861

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
             V+  L  A A    G  R   L +       AQ +E     +   +F            
Sbjct: 862  SVIAKLAEADAFRSLGLDRRAALWA-------AQGLEAGGAAERLPLFDQANLHELRPEP 914

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
                           + + L     GHP+   +  L +  +   ++      G  + +A 
Sbjct: 915  DVHLPPMLPGEHVMADYQSLTLSLKGHPVGFVRKSLAQSCVILCDDLKDLRAGRKVSVAG 974

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +V+ +Q+  + KG  + ++T  + +       +P
Sbjct: 975  LVLVRQRPGSAKG--VIFMTLEDESGIANVIVWP 1006


>gi|227879083|ref|ZP_03996972.1| possible DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256843072|ref|ZP_05548560.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256850276|ref|ZP_05555705.1| DNA polymerase III alpha-chain [Lactobacillus crispatus MV-1A-US]
 gi|262046332|ref|ZP_06019294.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US]
 gi|293381286|ref|ZP_06627289.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 214-1]
 gi|312977257|ref|ZP_07789005.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus CTV-05]
 gi|227861324|gb|EEJ68954.1| possible DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|256614492|gb|EEU19693.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256712913|gb|EEU27905.1| DNA polymerase III alpha-chain [Lactobacillus crispatus MV-1A-US]
 gi|260573203|gb|EEX29761.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US]
 gi|290922102|gb|EFD99101.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 214-1]
 gi|310895688|gb|EFQ44754.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus CTV-05]
          Length = 1035

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 324/1025 (31%), Positives = 529/1025 (51%), Gaps = 46/1025 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL     +++++        P + + D N  +  + F + A  AGI+P++G 
Sbjct: 6    LQNISSFTLLSSPTKVSDLIKDAKEKGYPVVGLADVNVTYGLVNFYELAKKAGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
            QL ++          G         +++   T +GY  L+ L S + L  + G+    + 
Sbjct: 66   QLRLN----------GLVDSTQKYDLLVFAKTNKGYHNLLRLSSAVNLLTENGQNDKVLT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL-FGDRLYVNLQRHRG 191
            L+ L +   + LI++       +  A    +  +    +   KKL F   LY+ +   + 
Sbjct: 116  LNELTKYLDDLLIIVPANLKSEL-MALHDTNQALGSDYVRQLKKLTF--DLYLGVYASKA 172

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTP 250
               Y    V  LA   EL LVA  +S +L   +      L A+A    +       +   
Sbjct: 173  SIDYI-DYVRGLAKQFELSLVAVEDSQYLRPREQFLQKTLRAIAKGDKLQDILPLAKQAG 231

Query: 251  DHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             HYL +   ++  +   DL +A+ NT +IA++C+  +    P+LP++ +    D     E
Sbjct: 232  SHYLDSAQNVLERYHQYDLDDAINNTWKIAQKCNAEVIFQKPVLPKYHQ----DKFPTSE 287

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR  A  GL+ R  Q +I       +Y++RL++EL VI +M F  YFLIV D I +  
Sbjct: 288  EYLRYLAQTGLQARFGQKSI-----PAEYQKRLNYELRVINQMGFDDYFLIVWDVINYCH 342

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +  I  GPGRGS  GS+ +Y+L IT++DP++++LLFERFLNP R  MPD D+D    +R+
Sbjct: 343  RVKITTGPGRGSACGSLVSYSLRITEVDPIQYNLLFERFLNPARHEMPDIDLDIPDIQRN 402

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             VI+Y+  KYG +  AQI+TFG++ AK  LRDVGR   +   ++ +    IP        
Sbjct: 403  TVIKYMYQKYGMDHAAQILTFGTMAAKQVLRDVGRVFGLTGPEITKWTHAIPYSKDKMGL 462

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A  +    R    A P    L + +  LEGL RH S HAAG+VI D  ++ +  +   
Sbjct: 463  KKAYQESRELRLLVDATPENKLLFKTALGLEGLPRHYSIHAAGLVISDDSIAGISGLQ-A 521

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
                +PVTQ   K++E  GL+K DFLGL+ LT+L   L  + Q+GVK+D + IP +D +T
Sbjct: 522  GPFGIPVTQQTKKYVESLGLLKIDFLGLRNLTVLGNILALVRQQGVKLDPNTIPLNDPKT 581

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T  +FQ ES G+R  L  + PD  ED++A+ +LYRPGP+ NI  +  RKNG 
Sbjct: 582  MELFQQGKTDAVFQFESGGIRGVLRKLHPDNFEDLVAVNALYRPGPMQNIDAFVARKNGT 641

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
              +    P +  +L+ T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK +  ++++
Sbjct: 642  ATVHYPDPSLKQILQSTYGILVYQEQVMQTAQILAGFSLGEADILRRAMSKKNQNVIEQE 701

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            + +FI+G  K G  K +   ++  + +FA+YGFN+SHA AY  I++  A++K HYP  F 
Sbjct: 702  RGKFIAGTVKKGHPKEVGERVYHYIEQFANYGFNRSHAVAYTKIAFWLAYLKVHYPAAFY 761

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             A +        K + +   A++  ++I+PP +N   +D+ + D +I   L AIKG+   
Sbjct: 762  TAMLN--SSTSAKAQSYSMQAQEAGVRILPPDINHSQLDYTLQDGKILVGLKAIKGLRLD 819

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A+ I  A+  KP+ S  DF  R+D+K L    +E+L+ AGA D    +R +LL +  ++
Sbjct: 820  FAKEI--AANTKPYKSFNDFLRRIDAKFLQVDAIEALIMAGAFDSIEDNRNELLLNCKDV 877

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                Q   +N      ++             L+      ++ + E E++ LGF  +  PL
Sbjct: 878  IANVQLTGQN-----MSL-----SEILGDAPLKPAEPPTAAQKAEMEEKALGFTTTTTPL 927

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
               +   +K   +   +      G ++     ++  +Q +T+ G  + + +F++ + E E
Sbjct: 928  IAVQKYAQKFNARPLNQFQLNDSGISV---GKLMKLKQIRTKNGKTMAFASFADTSSEQE 984

Query: 1029 ANFFP 1033
               FP
Sbjct: 985  IIIFP 989


>gi|27468296|ref|NP_764933.1| DNA polymerase III alpha chain [Staphylococcus epidermidis ATCC
            12228]
 gi|38604815|sp|Q8CNX0|DPO3A_STAES RecName: Full=DNA polymerase III subunit alpha
 gi|27315842|gb|AAO04977.1|AE016748_211 DNA polymerase III alpha chain [Staphylococcus epidermidis ATCC
            12228]
          Length = 1065

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 326/1026 (31%), Positives = 523/1026 (50%), Gaps = 85/1026 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI 
Sbjct: 3    AHLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +        T             V+L    +G + L ++ S + + ++      +
Sbjct: 63   GMTIYLTDGLYTIET-------------VVLAKNNQGLKSLYQISSAIMMRNKE----EV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRH 189
             + WL+    E LI++                 + AE         F     LY+    H
Sbjct: 106  PIEWLKRY-DEHLIII----------------FKEAELSHKQIIDAFEGKKELYL---NH 145

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +     +            V   ++ +L+E+D E    L A+  +T +         
Sbjct: 146  NSNNTLTGKR------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKETL 193

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +H+           S+    + N  EI   C   +  H  +LP+F+    +      ++
Sbjct: 194  DEHFPSIEELQTLNLSEDM--ITNANEIEELCQAEIAYHQSLLPQFVTPNGE----TSKD 247

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L    +  L               + Y  RL  E  +I  M F  YFLIV+D I +AK 
Sbjct: 248  YLWTILIHRLREWELND--------KTYFNRLKHEYKIITDMGFEDYFLIVSDLIHFAKT 299

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD DIDF   RR++
Sbjct: 300  HEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDIDIDFEDTRREK 359

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     +  
Sbjct: 360  VIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKLIPHKLGITLEE 419

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    F+     +   +R  E+S+KLEGL RH STHAAGI+I D+PL +  P+    
Sbjct: 420  AYQK--PEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQPLFKFAPLTTGD 477

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHET 608
                 +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  IP+DD + 
Sbjct: 478  TG--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINIDIEAIPYDDKKV 535

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++  
Sbjct: 536  FDLLSNGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRHNP 595

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             ++  +HP ++P+LK T GVIIYQEQ+M IA  ++G+S  EAD+LRRAM KK +  ++ +
Sbjct: 596  NQVAYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAMSKKNRAILESE 655

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            ++ FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F 
Sbjct: 656  RQHFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFY 715

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            A  ++  + + +K      +A+   I I+PP++N     +K  +  IY SL  IKG+G  
Sbjct: 716  ANILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYLSLGTIKGIGYQ 775

Query: 849  TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            + + I++    + P+    DF  R+  +  NR++LESL+  GA D FG +R  LLQ++D 
Sbjct: 776  SVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGKTRATLLQAIDQ 835

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +      VE++       +F       + K + E+       +  + E+  LGFY S HP
Sbjct: 836  VLDLNSDVEQDEM-----LFDL----LTPKQSYEEKEELPDQLLSDYEKEYLGFYISKHP 886

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            ++       K    G  +         I +       +Q +T+ G  + +VT ++     
Sbjct: 887  VE---KKFEKKQYLGIFQLSNGSHYQPILV--QFDHIKQIRTKNGQNMAFVTMNDGRTMM 941

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 942  DGVIFP 947


>gi|21230559|ref|NP_636476.1| DNA polymerase III alpha chain [Xanthomonas campestris pv. campestris
            str. ATCC 33913]
 gi|66769450|ref|YP_244212.1| DNA polymerase III alpha chain [Xanthomonas campestris pv. campestris
            str. 8004]
 gi|21112134|gb|AAM40400.1| DNA polymerase III alpha chain [Xanthomonas campestris pv. campestris
            str. ATCC 33913]
 gi|66574782|gb|AAY50192.1| DNA polymerase III alpha chain [Xanthomonas campestris pv. campestris
            str. 8004]
          Length = 1064

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 265/1047 (25%), Positives = 452/1047 (43%), Gaps = 88/1047 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + + A G+Q
Sbjct: 28   PAYAELHCLSDFSFLRGASSAEQLFARAHHCGYSALAITDECSLAGIVRGLEASRATGVQ 87

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                      VLLV  A GY +L  +++       GK +
Sbjct: 88   LIVGSEFTLVDG----------------TRFVLLVENAHGYPQLCSVITTGR-RAAGKGA 130

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+  + ++    +   ++ G     +   +       AE+     +++F +R ++ ++ 
Sbjct: 131  YRLGRAEVEAHFRD---VVPG-----VFALWLPGDQPQAEQGA-WLQRVFAERAFLAVEL 181

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D   R   +  LA    +  +A+ +       D    D L A+ H T+        
Sbjct: 182  HREQDDAARLQALQALAQQLGMSALASGDVQMAQRRDRIVQDTLTAIRH-TLPLADCGAH 240

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +  +     R             L+ +VE+A+RC+F L       PR +  +        
Sbjct: 241  LFRNGERHLRPRRALGNIYPHALLQASVELAQRCTFDLSKVQYTYPRELVPQG----HTP 296

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR    AG+  R  +GA A+         ++D EL +IA   +  +FL V D +++A
Sbjct: 297  ASYLRQLTEAGMRERWPEGAPAQ------VVAQIDSELELIAYKGYEAFFLTVQDVVRFA 350

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I    GRGS A S   YAL IT ++P    LL  RFL+ +R   PD D+DF  +RR
Sbjct: 351  RAQGIL-CQGRGSSANSAVCYALGITAVNPSETRLLMARFLSKERDEPPDIDVDFEHERR 409

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L            
Sbjct: 410  EEVLQYVYTKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGDTP 469

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              Q IA+        LA+P ++++L +++ L    RH S H  G VI D PLS LVP+  
Sbjct: 470  MEQRIAE----AGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPLSMLVPVEN 525

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
               +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P +D 
Sbjct: 526  AAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRDYTIATLPGEDA 585

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 586  ATYKMIQRADTVGVFQIESRAQMAMLPRLKPREFYDLVIEVAIVRPGPIQGDMVHPYLRR 645

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-E 723
            + G E +    P ++ +L  T G+ ++QEQVM++  + +GY+ SEAD LRR+M    +  
Sbjct: 646  RQGYEPVSFPSPGVEEILGRTLGIPLFQEQVMELV-IHAGYTDSEADQLRRSMAAWRRGG 704

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +M+  + R     +  G +      IFE +  F  YGF +SHAA++A + Y + W+K H 
Sbjct: 705  DMEPHRVRIRELMAGRGYAPEFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRHE 764

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQD-----ARQFNIQIMPPSVNTPCVDFKVGDN----- 833
            P  F    +  +        +  QD       +  ++++P  V     D  +        
Sbjct: 765  PAAFACGLLNAQPMGFYSASQIVQDARRGSPERQRVEVLPVDVLHSDWDNILVGGRPWHS 824

Query: 834  --------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                     I   L  + G+       I+ A A +PF  + D C R     L+ +   +L
Sbjct: 825  DADPGEQPAIRLGLRQVSGLSEKVVERIVAARAQRPFADIGDLCLRA---ALDEKARLAL 881

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              AGAL     +R     ++  ++     +                   S      +   
Sbjct: 882  AEAGALQSMVGNRNAARWAMAGVEARRPLL-----------------PGSPAERAVELPA 924

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
              +      + R +G     HP+ + +P + +  I G  E  A   G+ + +A +V  +Q
Sbjct: 925  PRAGEEILADYRAVGLSLRQHPMALLRPQMLQRRILGLRELQARRHGSGVHVAGLVTQRQ 984

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  T KG+   +VT  +         +
Sbjct: 985  RPATAKGT--IFVTLEDEHGMINVIVW 1009


>gi|293366351|ref|ZP_06613030.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus
            epidermidis M23864:W2(grey)]
 gi|291319476|gb|EFE59843.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus
            epidermidis M23864:W2(grey)]
 gi|329733734|gb|EGG70060.1| DNA polymerase III subunit alpha [Staphylococcus epidermidis VCU045]
          Length = 1065

 Score =  554 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 326/1026 (31%), Positives = 524/1026 (51%), Gaps = 85/1026 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI 
Sbjct: 3    AHLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +     +  T             V+L    +G + L ++ S + + ++      +
Sbjct: 63   GMTIYLTDGLYIIET-------------VVLAKNNQGLKSLYQISSAIMMRNKE----EV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRH 189
             + WL+    E LI++                 + AE         F     LY+    H
Sbjct: 106  PIEWLKRY-EEHLIII----------------FKEAELSHKQIIDAFEGKKELYL---NH 145

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +     +            V   ++ +L+E+D E    L A+  +T +         
Sbjct: 146  NSNNTLTGKR------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKETL 193

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +H+           S+    + N  EI   C   +  H  +LP+F+    +      ++
Sbjct: 194  DEHFPSIEELQTLNLSEDM--ITNANEIEELCQAEIAYHQSLLPQFVTPNGE----TSKD 247

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L    +  L               + Y  RL  E  +I  M F  YFLIV+D I +AK 
Sbjct: 248  YLWTILIHRLREWELND--------KTYFNRLKHEYKIITDMGFEDYFLIVSDLIHFAKT 299

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD DIDF   RR++
Sbjct: 300  HEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDIDIDFEDTRREK 359

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     +  
Sbjct: 360  VIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKLIPHKLGITLEE 419

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    F+     +   +R  E+S+KLEGL RH STHAAGI+I D+PL +  P+    
Sbjct: 420  AYQK--PEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQPLFKFAPLTTGD 477

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHET 608
                 +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  IP+DD + 
Sbjct: 478  TG--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINIDIEAIPYDDKKV 535

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++  
Sbjct: 536  FDLLSNGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRHNP 595

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             ++  +HP ++P+LK T GVIIYQEQ+M IA  ++G+S  EAD+LRRAM KK +  ++ +
Sbjct: 596  NQVTYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAMSKKNRAILESE 655

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            ++ FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F 
Sbjct: 656  RQHFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFY 715

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            A  ++  + + +K      +A+   I I+PP++N     +K  +  IY SL  IKG+G  
Sbjct: 716  ANILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYLSLGTIKGIGYQ 775

Query: 849  TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            + + I++    + P+    DF  R+  +  NR++LESL+  GA D FG +R  LLQ++D 
Sbjct: 776  SVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGKTRATLLQAIDQ 835

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +      VE++       +F       + K + E+       +  + E+  LGFY S HP
Sbjct: 836  VLDLNSDVEQDEM-----LFDL----LTPKQSYEEKEELPDQLLSDYEKEYLGFYISKHP 886

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            ++       K    G  +         I +       +Q +T+ G  + +VT ++     
Sbjct: 887  VE---KKFEKKQYLGIFQLSNGSHYQPILV--QFDHIKQIRTKNGQNMAFVTMNDGRTMM 941

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 942  DGVIFP 947


>gi|116626077|ref|YP_828233.1| DNA polymerase III subunit alpha [Candidatus Solibacter usitatus
            Ellin6076]
 gi|116229239|gb|ABJ87948.1| DNA polymerase III, alpha subunit [Candidatus Solibacter usitatus
            Ellin6076]
          Length = 1014

 Score =  554 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 276/1035 (26%), Positives = 468/1035 (45%), Gaps = 82/1035 (7%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
             P +V L   S++S LEG+     +    A    PA+A+ D N ++ +  F   A  AG+
Sbjct: 2    PPPYVELHARSAFSFLEGSCLPEELAGACANFGMPAMALLDRNGVYGSPRFHLAAKKAGV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +  IG ++                         LL ++ EGYQ L  LV+RM L    K 
Sbjct: 62   RAHIGSEITCTNGLTYP----------------LLAASREGYQNLCRLVTRMKLRAA-KG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
                 L  L E    GL+ +T                           +++G   LY  L
Sbjct: 105  EGAATLEELAEFSR-GLLCITPHPD-------------------QRLLEIYGRHNLYAEL 144

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRH    +     + V+LA    +P++ATN+  +      E  DV   + +   ++   R
Sbjct: 145  QRHCNREEEAGNQRTVELARRLGIPIIATNHPAYAIPAQRELLDVFTCIRNKVTLTTAGR 204

Query: 246  PR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                  + ++K   EM  +F+DLPEA+ NT+EI+ R  F L       PR+   + +   
Sbjct: 205  LLERNNERHVKTPDEMARLFADLPEAIANTLEISSRLDFTLADLGYEFPRYPVPDGE--- 261

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
              + + LR  A  G   R                 +++ EL +I R++ +GYFLIV D +
Sbjct: 262  -TQISFLRKLADEGARRRYRPYYERARL-------QVERELTMIERLRLAGYFLIVWDIV 313

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++ K+++I    GRGS A S   YAL IT +DP+   LLFERFL+ +R   PD D+D   
Sbjct: 314  RFCKEHDIL-AQGRGSAANSAVCYALEITAVDPVGMDLLFERFLSEERGEWPDIDLDLPS 372

Query: 425  -DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D+R++ I+YV  ++G    A      + + ++A R+VG+AL    S ++ L KL+    
Sbjct: 373  GDKREQAIQYVYQRFGQLGAAMTANVITYRGRSAAREVGKALGFEISTLENLTKLVRAWE 432

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                         R     +A+P V +  E+ Q  + L RH   H+ G+V+    L  +V
Sbjct: 433  WKDPKDTT-DRQFREAGFDIANPRVRKFFELYQMAQDLPRHLGQHSGGMVVCQGALDSVV 491

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+         V Q++ +     G++K D LGL  + +++  L         VD++ +P 
Sbjct: 492  PLEPASMPGRVVVQWDKEDCADLGIVKVDLLGLGMMAVIEDCLKM----CPDVDIAHLPQ 547

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662
            DD + Y  L    T+G+FQ+ES      L  M+P    D++  V++ RPGPI   +V+  
Sbjct: 548  DDPKVYGALQRADTIGMFQVESRAQMSCLPRMKPVRFYDVVVQVAIIRPGPIVGKMVHPY 607

Query: 663  -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KK 720
             NR+ G+E +  +HP ++P+L+ T GV ++QEQ++++A + +G+S  EA+ LRRAMG K+
Sbjct: 608  LNRRQGREVVDCLHPSLEPVLRRTLGVPLFQEQLLRMAMIAAGFSGGEAEELRRAMGFKR 667

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             ++ M + + +  +G ++ GI+      I   +  FA YGF +SHAA++A+++Y +AW+K
Sbjct: 668  SEKRMQEIEIKLRAGMTRKGITGESQEAIVRSITSFALYGFPESHAASFALLAYASAWLK 727

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSL 839
             H   EF  A +  +           +DA++  ++++P  V        V  D  +   L
Sbjct: 728  CHRLAEFTCAMLNNQPMGFYSPAILIKDAQRHGLRVLPVDVTQSEWLCTVVSDQCMRLGL 787

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY-SR 898
               +G+     + I+ A A++PF S++D   RV  ++L +  L  L   GAL+      R
Sbjct: 788  RYARGLREQAGQAILRARAERPFTSVDDLAVRV--RELRKDELNRLAEIGALNPLEKQHR 845

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
               L                       + AH + T      +      +   R   + R 
Sbjct: 846  RDALWQSQRAILPV-----------GPLLAHLEETGEPSPLVP----MDHEERLWADYRG 890

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             G     HP+   +  +  +G+           G+ +R+A  V+ +Q+  T KG    ++
Sbjct: 891  TGLTVGKHPMAWRRIEMNALGVVPAMHLARVRDGSVVRIAGSVIVRQRPGTAKG--FVFL 948

Query: 1019 TFSEPAKEYEANFFP 1033
            +  +      A   P
Sbjct: 949  SMEDETGIMNAIVAP 963


>gi|329724716|gb|EGG61222.1| DNA polymerase III subunit alpha [Staphylococcus epidermidis VCU144]
          Length = 1065

 Score =  554 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 326/1026 (31%), Positives = 523/1026 (50%), Gaps = 85/1026 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI 
Sbjct: 3    AHLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +        T             V+L    +G + L ++ S + + ++      +
Sbjct: 63   GMTIYLTDGLYTIET-------------VVLAKNNQGLKSLYQISSAIMMRNKE----EV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRH 189
             + WL+    E LI++                 + AE         F     LY+    H
Sbjct: 106  PIEWLKRY-DEHLIII----------------FKEAELSHKQIIDAFEGKKELYL---NH 145

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +     +            V   ++ +L+E+D E    L A+  +T +         
Sbjct: 146  NSNNTLTGKR------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKETL 193

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +H+           S+    + N  EI   C   +  H  +LP+F+    +      ++
Sbjct: 194  DEHFPSIEELQTLNLSEDM--ITNANEIEELCQAEIAYHQSLLPQFVTPNGE----TSKD 247

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L    +  L               + Y  RL  E  +I  M F  YFLIV+D I +AK 
Sbjct: 248  YLWTILIHRLREWELND--------KTYFNRLKHEYKIITDMGFEDYFLIVSDLIHFAKT 299

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD DIDF   RR++
Sbjct: 300  HEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDIDIDFEDTRREK 359

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     +  
Sbjct: 360  VIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKLIPHKLGITLEE 419

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    F+     +   +R  E+S+KLEGL RH STHAAGI+I D+PL +  P+    
Sbjct: 420  AYQK--PEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQPLFKFAPLTTGD 477

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHET 608
                 +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  IP+DD + 
Sbjct: 478  TG--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINIDIEAIPYDDKKV 535

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++  
Sbjct: 536  FDLLSNGNTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRHNP 595

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             ++  +HP ++P+LK T GVIIYQEQ+M IA  ++G+S  EAD+LRRAM KK +  ++ +
Sbjct: 596  NQVAYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAMSKKNRAILESE 655

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            ++ FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F 
Sbjct: 656  RQHFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFY 715

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            A  ++  + + +K      +A+   I I+PP++N     +K  +  IY SL  IKG+G  
Sbjct: 716  ANILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYLSLGTIKGIGYQ 775

Query: 849  TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            + + I++    + P+    DF  R+  +  NR++LESL+  GA D FG +R  LLQ++D 
Sbjct: 776  SVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGKTRATLLQAIDQ 835

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +      VE++       +F       + K + E+       +  + E+  LGFY S HP
Sbjct: 836  VLDLNSDVEQDEM-----LFDL----LTPKQSYEEKEELPDQLLSDYEKEYLGFYISKHP 886

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            ++       K    G  +         I +       +Q +T+ G  + +VT ++     
Sbjct: 887  VE---KKFEKKQYLGIFQLSNGSHYQPILV--QFDHIKQIRTKNGQNMAFVTMNDGRTMM 941

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 942  DGVIFP 947


>gi|329737251|gb|EGG73505.1| DNA polymerase III subunit alpha [Staphylococcus epidermidis VCU028]
          Length = 1065

 Score =  554 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 326/1026 (31%), Positives = 524/1026 (51%), Gaps = 85/1026 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI 
Sbjct: 3    AHLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +     +  T             V+L    +G + L ++ S + + ++      +
Sbjct: 63   GMTIYLTDGLYIIET-------------VVLAKNNQGLKSLYQISSAIMMRNKE----EV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRH 189
             + WL+    E LI++                 + AE         F     LY+    H
Sbjct: 106  PIEWLKRY-EEHLIII----------------FKEAELSHKQIIDAFEGKKELYL---NH 145

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +     +            V   ++ +L+E+D E    L A+  +T +         
Sbjct: 146  NSNNTLTGKR------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKETL 193

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +H+           S+    + N  EI   C   +  H  +LP+F+    +      ++
Sbjct: 194  DEHFPSIEELQTLNLSEDM--ITNANEIEELCQAEIAYHQSLLPQFVTPNGE----TSKD 247

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L    +  L               + Y  RL  E  +I  M F  YFLIV+D I +AK 
Sbjct: 248  YLWTILIHRLREWELND--------KTYFNRLKHEYKIITDMGFEDYFLIVSDLIHFAKT 299

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD DIDF   RR++
Sbjct: 300  HEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDIDIDFEDTRREK 359

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     +  
Sbjct: 360  VIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKLIPHKLGITLEE 419

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    F+     +   +R  E+S+KLEGL RH STHAAGI+I D+PL +  P+    
Sbjct: 420  AYQK--PEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQPLFKFAPLTTGD 477

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHET 608
                 +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  IP+DD + 
Sbjct: 478  TG--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINIDIEAIPYDDKKV 535

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++  
Sbjct: 536  FDLLSNGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRHNP 595

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             ++  +HP ++P+LK T GVIIYQEQ+M IA  ++G+S  EAD+LRRAM KK +  ++ +
Sbjct: 596  NQVAYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAMSKKNRAILESE 655

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            ++ FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F 
Sbjct: 656  RQHFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFY 715

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            A  ++  + + +K      +A+   I I+PP++N     +K  +  IY SL  IKG+G  
Sbjct: 716  ANILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYLSLGTIKGIGYQ 775

Query: 849  TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            + + I++    + P+    DF  R+  +  NR++LESL+  GA D FG +R  LLQ++D 
Sbjct: 776  SVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGKTRATLLQAIDQ 835

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +      VE++       +F       + K + E+       +  + E+  LGFY S HP
Sbjct: 836  VLDLNSDVEQDEM-----LFDL----LTPKQSYEEKEELPDQLLSDYEKEYLGFYISKHP 886

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            ++       K    G  +         I +       +Q +T+ G  + +VT ++     
Sbjct: 887  VE---KKFEKKQYLGIFQLSNGSHYQPILV--QFDHIKQIRTKNGQNMAFVTMNDGRTMM 941

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 942  DGVIFP 947


>gi|42519003|ref|NP_964933.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533]
 gi|41583290|gb|AAS08899.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533]
          Length = 1038

 Score =  554 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 329/1028 (32%), Positives = 530/1028 (51%), Gaps = 45/1028 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V LQ  S ++LLE    + N+ +        AIA+TD N  +  ++F + A   GI+P++
Sbjct: 4    VSLQNLSGFTLLESPTKVKNLAENAKKKGYSAIALTDINITYGLVDFYKAAKDIGIKPLL 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVR 130
            G QL I+          G         ++++    +GY+ ++ L S + L  + G++ + 
Sbjct: 64   GMQLRIN----------GLIDGANKYDLIVIAKDDQGYRNILRLSSAVNLLTENGEKEIV 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR--LYVNLQR 188
            + L  L++     +++        + +    N+ +V    L   + L      +Y+ +  
Sbjct: 114  LTLEDLKKYLGHLILITPSNLHSEL-KMLQTNNPKVGANYLRKAQDLLPSSSSMYLGVYA 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQKDRPR 247
              G   Y    +  LA    LPL A  +  +L+  +      L A+  +T + + +   +
Sbjct: 173  DSGQQEYIN-YIRSLATQFNLPLTAVEDGQYLNRNEQFLRRTLQAIKTNTHLENIEQLAK 231

Query: 248  VTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                HYLKN  E+  I+   D+ +AL+N  EI + C+  ++   P LP+F + +      
Sbjct: 232  QAGSHYLKNSEELQVIYRKFDIEDALKNAEEIGKICTAEIKFQDPQLPKFKQNKFP---- 287

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L + A  GL  R              YR+RLD+EL VI  M F  YFLIV D + 
Sbjct: 288  TSKEYLHSLAQTGLAKRF------NNQIPTKYRERLDYELQVINEMGFDDYFLIVWDVMN 341

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A   +I  GPGRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R  MPD D+D   +
Sbjct: 342  FAHSVHITTGPGRGSAAGSLVSYALRITEVDPIEYNLLFERFLNPARQQMPDIDLDIPDN 401

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI+Y+  KYG    AQI+TFG+L AK  L+DV R   +   +  R    IP+    
Sbjct: 402  RRDEVIKYMFEKYGMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAIPHSKGK 461

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                +A       +     +     L   ++ LE L RH S HAAG+VI D  L+++V +
Sbjct: 462  ITLAEAYQKSKELQLLVNTNELSKILFATAEHLENLPRHYSIHAAGLVITDDSLAEIVGL 521

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                   +PVTQ     +E  GL+K DFLGL+ LT+L   +  L   G+ ++ + IP DD
Sbjct: 522  Q-AGPLGIPVTQQTKSNVESLGLLKIDFLGLRNLTILGNIVAALRADGININPNHIPLDD 580

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             ET  L     T  +FQ ES G+++ LE + PD  EDI+A+ +LYRPGPI+NI  + NRK
Sbjct: 581  QETLDLFQRGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPINNIDHFINRK 640

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKE++    P +  +L  T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK  + +
Sbjct: 641  HGKERVQYPDPSLKKILGTTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSKKNADVI 700

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             +++ +FI GA K G  K  A  +++ +A+FA+YGFN+SHA AY+ I++  A+ K HYP 
Sbjct: 701  QRERAKFIEGAIKLGRKKETAEKVYDYIAQFANYGFNRSHAVAYSKIAFWLAYFKVHYPG 760

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F  A +   M N  KI ++   A++  I+I+PP +     DF + + +I   L AI+G+
Sbjct: 761  AFYLALLNSNMGNRNKIAQYLMQAQEAGIKILPPDIENSKTDFSLENGKILVGLKAIRGL 820

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
             +   + I+E    +P  S+ DF  ++D+  L+   +E+L+ AG  D    +R +LL+  
Sbjct: 821  RSDLLKQILEI--KRPIKSMTDFLWKIDNNLLSADAVENLIKAGTFDRLAPNRNELLKIN 878

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
             ++ +  +    N      ++F     T   K+  EK     ++ +   E   +GF    
Sbjct: 879  KDLVESVKMAGSN-----LSLF----ETLEPKVEEEKMP--TAAEKSAMEVEAMGFSTGI 927

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            +P+   +   RK   K  +   +  +G  +     ++  +   T+KG  + +  FS+ + 
Sbjct: 928  NPIIAVQKYARKFNAKRLQVFESNEQGIAV---GKLIKVKPITTKKGDNMAFAVFSDTSG 984

Query: 1026 EYEANFFP 1033
            E +   FP
Sbjct: 985  EKDFTIFP 992


>gi|326317329|ref|YP_004235001.1| DNA polymerase III subunit alpha [Acidovorax avenae subsp. avenae
            ATCC 19860]
 gi|323374165|gb|ADX46434.1| DNA polymerase III, alpha subunit [Acidovorax avenae subsp. avenae
            ATCC 19860]
          Length = 1076

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 250/1046 (23%), Positives = 431/1046 (41%), Gaps = 76/1046 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S   GA     ++ + A     A+A+TD  ++   +     A   G++
Sbjct: 20   PGYAELHCLSNFSFQRGASHPFELVQRAAELGYAALALTDECSVAGVVRAHTAARQCGLK 79

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +                        +V L     G+  L E +S    +   K  
Sbjct: 80   LIVGSEFACGDV-----------------RLVALARNETGWGNLCEFISDARRI-APKGE 121

Query: 129  VRICL-SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             R+   S    +  +G  +L       +  A      +    +     +  G   ++ ++
Sbjct: 122  YRVHAGSDFARL--QGCEVLVAPRRDRL-SALDPGGIEATVAQACAPLRAQGIHPWLAVE 178

Query: 188  RHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   D       +       +LPLVA  +      +     DV+ AV     VS+    
Sbjct: 179  LHTAPDDAAWLEALEHAGRALDLPLVAAGDVHMHVLQRKPLQDVVTAVRLGRPVSECGFA 238

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                          ++ F   P  L  T+E+A RC+F L       PR    E     + 
Sbjct: 239  LQAHGERRLRPRMRLAGF-YPPALLAATLEVAARCTFSLDEIRYRYPRETVPEGMTPGEA 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                      AG   R  QG         + R+++  EL +IA  ++  YFL V D ++ 
Sbjct: 298  LAAY----TEAGARERYPQGV------PPEVREQIAKELELIAHCRYEMYFLTVHDIVRE 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I    GRGS A S   Y L IT +DP +  LLFERF++ +R   PD D+DF  DR
Sbjct: 348  ARRRGIL-CQGRGSAANSAVCYCLGITAVDPTKTRLLFERFISKERDEPPDIDVDFEHDR 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG ER A      + + ++ALRDVG+AL +  + VD   K         
Sbjct: 407  REEVIQYIYGKYGRERAAIAAVVITYRTRSALRDVGKALGVAPAVVDAFAKDHHWFD-ED 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            ++   + + +    A +   +    LE++Q+L G  RH S H  G V+ +  L++LVP+ 
Sbjct: 466  IAAGRLQELAAGLGAPIGAHTAALWLELAQELRGFPRHLSQHVGGFVLTEGKLTRLVPVE 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                    + Q++   ++   L+K D L L  L+ L+++L   A  RG   +L+ IP +D
Sbjct: 526  PASMDGRSIIQWDKDDLDDMHLMKVDVLALGMLSALRRALGLRAALRGQAWELADIPRED 585

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--- 662
              TY ++    T+G+FQ+ES      L  ++P  + D++  V++ RPGPI   +V+    
Sbjct: 586  PATYDMICAADTVGVFQIESRAQMSMLPRLKPRELYDLVVEVAIVRPGPIQGGMVHPYLQ 645

Query: 663  --NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
               R+  KE +   H  + P L+ T GV I+QEQVMQIA + + ++   AD LRR+M   
Sbjct: 646  ARERRARKEALELEHEDLRPALERTLGVPIFQEQVMQIAMIAADFTPGMADDLRRSMAAW 705

Query: 721  IKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
             +   + + ++  + G  KN  S   A  I++ +  F +YGF +SHA ++A+++Y ++W 
Sbjct: 706  KRRGGVHRFEQVLMEGMRKNEYSPEFAQRIYQQMLGFGEYGFPESHAYSFALLAYASSWF 765

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------- 832
            K H P  FL A +  +        +  QDAR+  ++++P        D  +         
Sbjct: 766  KRHEPACFLVALLNSQPMGFYTPSQLVQDARRHGLRVLPADAAHSDWDSTLEGPAAPLPG 825

Query: 833  -----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +   L  + G G   A  +M A    PF  ++D   R    + + + L +   
Sbjct: 826  LQQAQPAVRLGLRLVAGYGPEAAARLMRARDAGPFADVQDLALRARQDRQDLQALAAADA 885

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
                      R Q +      ++    ++             E       + L +     
Sbjct: 886  L---RSLAGHRRQQMWDAAAQRRAPALLQ-------------EAPVHEAPLALPEAPE-- 927

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
                   +    G     HP+ + +  +    I+  +   A   G  +R   +V  +Q+ 
Sbjct: 928  -GEEIVFDYAATGLTLRRHPMALLRERMACWRIQAAQALQAVPHGRRVRACGIVTVRQRP 986

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + KG+   +VT  +         +P
Sbjct: 987  GSAKGTM--FVTLEDETGTVNVIVWP 1010


>gi|327542106|gb|EGF28600.1| DNA polymerase III, alpha subunit [Rhodopirellula baltica WH47]
          Length = 1045

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 309/919 (33%), Positives = 490/919 (53%), Gaps = 37/919 (4%)

Query: 146  MLTGGSSGPIDRAFFFN-----SSQVAEKRLLTFKKLFGDRLYVNLQRHR-GYDRYRESQ 199
             L+G  S    RA           + A+K    F K+FGDR ++ +  +     R +   
Sbjct: 2    CLSGCVSSEFSRAILKGIQTKEHEEEAKKIAGWFHKVFGDRYFIEIMNNDVDIQRTQLEG 61

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRS 258
             V +A    LPLVAT++  ++++ED EA D+++ +      +   R ++     +L++  
Sbjct: 62   AVDIANKMGLPLVATSDCHYVNQEDAEAQDIMLCINTGRFRTDNTRMKMENDQFFLRSPQ 121

Query: 259  EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
            +M   F  L +A+  + EIA      L+ +    P F   +    +    + LR     G
Sbjct: 122  QMYEKFPGLEDAVGRSQEIADTVDIQLEFNKYFFPSFPCPD----ELTPLDYLRKLCEQG 177

Query: 319  LEVRLA--QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            L  R       I  G  + +   RLD EL+VI ++ +  YFLIV DF+  A+   I    
Sbjct: 178  LMERYEGDDERIIDGKLSDEVMARLDRELDVIEKLGYPTYFLIVWDFVNHARDIGI-SAT 236

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
             RGSG G++  YAL ++ + PLR+ LLFERFL+  R   PD DIDF ++RR EVI YV+ 
Sbjct: 237  ARGSGVGAIVCYALYMSHVCPLRYDLLFERFLDESRTEPPDIDIDFEKERRIEVIDYVKE 296

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            +YG E V QI TFG+L AKAA++D GRAL +P S+V+++ +L+P++    +  +++   +
Sbjct: 297  RYGSEMVCQIGTFGTLAAKAAIKDTGRALGIPLSRVNQITELVPDELKITI-AKSLEKSA 355

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
              +     DP +  LL+++ K+EGL R+  THAA +VI D+PL++ VP+ R       +T
Sbjct: 356  DLKMIYDGDPEIRELLDLAMKIEGLARNVGTHAAAVVIADKPLTEYVPLGRVPGKQDVIT 415

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTK 615
            Q+ M  +E +GL+K DFLGL+ LT+L +++  + Q     +D    P DD  +Y LL   
Sbjct: 416  QWAMVDVEASGLLKMDFLGLRNLTILSRTVKLVEQTTGTTIDPLKFPLDDKPSYALLQRG 475

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVS 673
             T G+FQLES G+R  L+ M+PD   DIIA  +LYRPGP++  +   Y N K+G+++   
Sbjct: 476  ETKGVFQLESGGIRDLLQRMKPDTFNDIIATAALYRPGPLEGGMVDDYVNIKHGRQQPEY 535

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
             HP++  +L+ET  +++YQEQVM+I   L    L++A    +A+ KK +  +D   + FI
Sbjct: 536  KHPVLKEILEETNSIMVYQEQVMRILNRLGDVPLAKAYTCIKAISKKKQALIDANHDVFI 595

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +G+ KNG+++  A +I+ L+ KFA YGFNKSH+ AYA+++YQTA++K HYPVEF+AA ++
Sbjct: 596  AGSIKNGLAEKDAEDIWNLIVKFAGYGFNKSHSTAYALVAYQTAYLKAHYPVEFMAALLS 655

Query: 794  LE-----MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             +         + + +  +D  + +I+++PP+VN    DF V D +I ++L+AIK  G +
Sbjct: 656  SDISGRNFKRKDALVEHMEDCDRMDIEVLPPNVNQSDADFGVLDGKIPFALSAIKACGGS 715

Query: 849  TARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            TA  I E    + PF  + DFC RVD    NR  +E+L+ AGA DCFG  R QL   L+ 
Sbjct: 716  TAISIEEERKKNGPFKDIFDFCERVDPHDCNRSSIETLIKAGAFDCFGAKRSQLASVLER 775

Query: 908  IQKYAQWVEKNRTNKHEN--------IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
              +    V+ ++     +          A   G  S  + L          +   E+ VL
Sbjct: 776  AMQAGAKVQADKKTGQASFFDAFDEEDDADSNGESSAAVPLPDIEEWPDREKLLAEKEVL 835

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK---G--SR 1014
            GFY   HPL  ++  L        E        + + +  M+ S +   T+    G  S+
Sbjct: 836  GFYLDSHPLAEFENKLATFRTHTTESMADCKDRDEVIVGGMISSIKIAHTKNPKPGAPSK 895

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
                   + A       +P
Sbjct: 896  YANFDLEDMAGSVRCICWP 914


>gi|119475666|ref|ZP_01616019.1| DNA polymerase III, alpha subunit [marine gamma proteobacterium
            HTCC2143]
 gi|119451869|gb|EAW33102.1| DNA polymerase III, alpha subunit [marine gamma proteobacterium
            HTCC2143]
          Length = 1044

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 256/1033 (24%), Positives = 448/1033 (43%), Gaps = 68/1033 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+++ L GA     ++ + A     A+ I+D  +    +     A +  I+
Sbjct: 6    PDYAELHCISNFTFLRGASHPEELVTQAAELGYRAVTISDECSFAGIVRAHMAAKSCNIK 65

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG +  ++                    ++LL +    Y ++  L+S+  L    K S
Sbjct: 66   LIIGSEFYLN----------------ENIRLLLLATDKTAYSQISSLISKARLRS-PKGS 108

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
              I L   Q      L +        +      +  +  +K     K +F   L++ +  
Sbjct: 109  YEISLKDFQRESPHYLAI-------WLVNDALTDEQEANQKIAEQLKSVFQQSLWMGINL 161

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             R  + + R  Q  ++A  + +P+ A+ N            DV+ A+  +    Q+   +
Sbjct: 162  PRKSHQQQRYLQCYEIAKRYHIPMTASGNVHMHVAARKPLQDVVTAIRLN-TNIQRLGNK 220

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +  +  L   S         PE L  T++IA RC F L       P  I           
Sbjct: 221  LQANAELHLHSRKQLASLYPPELLAETLQIAARCQFTLDSLNYQYPDEIVP----PNTTA 276

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     G   R            +     ++ EL +I  MK+  YFL V D +Q+A
Sbjct: 277  TQFLRELTEDGARQRWPDH------IPETVISLIEKELALIHEMKYEQYFLTVYDIVQFA 330

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I    GRGS A S   Y L IT++DP R  LLFERF++ +R   PD D+DF  +RR
Sbjct: 331  RNQKIL-CQGRGSAANSAVCYCLFITEVDPARSQLLFERFISKERDEPPDIDVDFEHERR 389

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++Y+  KYG ER A   T  + + ++A+RDVG+AL    + VD+L K +      P 
Sbjct: 390  EEVMQYIYRKYGRERAALAATVITYRPRSAVRDVGKALGFDQALVDKLAKSLSWW-KKPQ 448

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
             L  + + ++ ++  ++     +L++    +    RH S H  G +I   P+S LVP+  
Sbjct: 449  QLDELLNRAQVQQRSISAQLFLQLVDE---ILRFPRHLSQHVGGFIICREPISMLVPLEN 505

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF----LAQRGVKVDLSLIPF 603
                +  + Q++   IE  GL+K D L L  L+ ++KSL +        G +  L  IP 
Sbjct: 506  AAMKNRTIIQWDKTDIESLGLMKIDVLALGMLSAIRKSLGYISDFEETNGKEFQLDNIPA 565

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D  TY +L    T+G+FQ+ES      L  ++P    D++  +++ RPGPI   +V+  
Sbjct: 566  EDKATYDMLCKADTIGVFQIESRAQMNMLPRLRPQTFYDLVIQIAIIRPGPIQGGMVHPF 625

Query: 664  RKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             +  +  E I   +  ++ +L  T GV I+QEQV+Q+A + +G+S  EAD LRRA+    
Sbjct: 626  LRRRQGLESITYANAGLEAVLGRTLGVPIFQEQVIQLAMVAAGFSGGEADQLRRAITSWG 685

Query: 722  KEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            +    D  +++ I+G  + G S   A  +F  L  F  YGF +SH+A++A+++Y ++W+K
Sbjct: 686  RNGHLDLFRDKLINGMLERGYSIDFADRLFNQLRGFGAYGFPESHSASFALLAYASSWIK 745

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSL 839
             ++P  F    +  +        +  QDAR+  +QI+P  +N    D  +   + +    
Sbjct: 746  CNHPGAFYCGLLNSQPMGFYAPAQLVQDARRHGVQILPVCINHSQWDHCLMTRHVLRLGF 805

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
              +KG+   +A  ++ A AD+ F S+ DF  R     +NR+    LV + A  CF   R 
Sbjct: 806  RLLKGMHRKSAERLVTARADRSFSSMADFIQRTH---INRQEQNCLVRSDAFQCFNSHRY 862

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            Q    +  +++               +F  E     D   +   +        + +    
Sbjct: 863  QSQWQISAVEES------------RPLFNVESDAVLDDHIV--LAAPKEHEEIQWDYSYT 908

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G     HP+ + +            +      G+ + +A +V  +Q+  T  G  + ++T
Sbjct: 909  GLTLRRHPMALLRENQLLHRCTRATDLATIEHGHIVHIAGLVTCRQRPGTATG--VLFIT 966

Query: 1020 FSEPAKEYEANFF 1032
              +         +
Sbjct: 967  LEDETGYCNVIVW 979


>gi|212635132|ref|YP_002311657.1| DNA polymerase III subunit alpha [Shewanella piezotolerans WP3]
 gi|212556616|gb|ACJ29070.1| DNA polymerase III alpha subunit [Shewanella piezotolerans WP3]
          Length = 1057

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 244/1049 (23%), Positives = 452/1049 (43%), Gaps = 75/1049 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S+Y+  +GA   + ++++ A     AIAITD  +    ++  + A    IQ +
Sbjct: 2    YAELHAISNYTFFKGASHPHELVEQAAELGYQAIAITDECSFAGIVKAHEAAKKCQIQLL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +  +                      VLL    +GY ++ +L++      + K   +
Sbjct: 62   VGTEFQLAEGI-----------------FVLLAMNRKGYGQISQLITTSRRRAE-KGEYQ 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSS--------GPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            + LS LQ+ G +  I+L   +S        G +        + V      +  + F  R 
Sbjct: 104  LQLSELQQ-GLDNTILLWQPASLKSINSTLGELPTQIATYQADVL-TVGQSLYRQFPQRC 161

Query: 183  YVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ ++R        + Q+  Q+A   ++P VA  +     ++  +  DVL  + + T ++
Sbjct: 162  YLLMERSLVAGEALKIQLWTQIAKQLDMPCVAAGSVRMHCQQRQKLLDVLTCIRYGTELA 221

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            Q     +         +  +       E +EN++ IA RC+F L+      P  +     
Sbjct: 222  QAGELLLANAETALKPTATL-YKRYPKEWIENSLLIAERCNFSLEELKYEYPSEVVP--- 277

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              +      L  +   G   R      A          + + EL +I  M++  +FL + 
Sbjct: 278  -SELSASEYLAQEVYKGALRRFNHQVPAS------VTAQYEKELVLIKAMQYEYFFLTIY 330

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D +Q+AK   I    GRGS A SV  Y L IT++DP + ++LFERF++ +R   PD D+D
Sbjct: 331  DIVQYAKSQQIL-HQGRGSAANSVVCYCLGITEVDPTKVNMLFERFVSKERNEPPDIDVD 389

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+E+I+Y+  KYG ER A   T  S + K+AL DVG+AL +    +D +   I  
Sbjct: 390  FEHERREEIIQYIYGKYGRERAALAATVISYRFKSALADVGKALGIDKQYLDHMQHSIDR 449

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                   L  + +    +     +     L  + Q + G  RH S H  G +I   PLS+
Sbjct: 450  RDTEVDWLTQLQE----KSLLPREGMGKYLFPLVQSILGFPRHLSQHVGGFIISSGPLSE 505

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            LVP+     +D  V Q++   +E  GL+K D L L  LT ++K  + ++    +  +  +
Sbjct: 506  LVPVENASMADRTVIQWDKDDLESLGLLKVDVLALGMLTAIRKCFELISTPEQRFTMEQV 565

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             ++    Y +L    ++G+FQ+ES      L  ++P C  D++  +++ RPGPI   +V+
Sbjct: 566  KWEQAAVYQMLQRGDSIGVFQVESRAQTSMLPRLKPRCYYDLVVQIAIVRPGPIQGDMVH 625

Query: 662  N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                R++G EK+      ++ +L  T GV I+QEQV+Q+A + +G+S  EAD LRRAM  
Sbjct: 626  PYLKRRDGLEKVTYPSKEVESVLSRTMGVPIFQEQVIQLAMVAAGFSGGEADKLRRAMAS 685

Query: 720  KIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
              K     + +++ + G    G S   +  I+  +  F +YGF +SH+A++A+++Y +A+
Sbjct: 686  WKKTGELQQFEDKLLKGMLSRGYSAEFSKQIYRQIRGFGEYGFPESHSASFALLAYVSAY 745

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF---KVGDN-- 833
            +K H+P  F  + +  +        +  QD ++  + ++    N          + DN  
Sbjct: 746  LKFHHPAAFCCSLLNSQPMGFYSPSQLIQDVQRHGVVVLAVCANRSQWQHTLVTIADNRI 805

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I      +KG+       +++   ++ F  ++     +    + R  LE+L  A A   
Sbjct: 806  AIRLGFRLVKGLNRQEIEKLIKQRPEQGFTHIDQ----IYYLGIARHELETLASADAFSQ 861

Query: 894  FGYSRMQLLQSL----------DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
                R Q+   L          D++ +     ++        + A         +TL   
Sbjct: 862  IAGHRHQVRWQLSACQPSLPLFDDVLEAGMNCKQE---GERVLPASGGLNSVADVTLPS- 917

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
               + +   + +    G     HP+ + +           E+      G  + +A +VV 
Sbjct: 918  --PSIAESMQADYAYTGVTLGQHPMSLLREQSCLHHCLTAEQLDECRSGQVVTVAGLVVG 975

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +Q+  T  G  + ++T  +         +
Sbjct: 976  RQRPGTASG--VTFITLEDETGNVNLVVW 1002


>gi|260428495|ref|ZP_05782474.1| error-prone DNA polymerase [Citreicella sp. SE45]
 gi|260422987|gb|EEX16238.1| error-prone DNA polymerase [Citreicella sp. SE45]
          Length = 1113

 Score =  553 bits (1424), Expect = e-155,   Method: Composition-based stats.
 Identities = 262/1081 (24%), Positives = 435/1081 (40%), Gaps = 111/1081 (10%)

Query: 5    LEKSPS-------FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE 57
            + +S         +  L V S+++ L GA     ++ +       AIAITD N L   + 
Sbjct: 1    MTRSADPPDLPTGYAELCVTSNFTFLTGASHPEELVLRATELGLSAIAITDRNTLAGVVR 60

Query: 58   FSQK-------ACAAGIQPIIGCQLDI------DMQDNLKMTNQGKTPFPTV---PSI-- 99
                       A  A         L +      D     ++        P     P +  
Sbjct: 61   AWSALKTLREDAQEA---------LRVRSCHQTDPCSRQEVGQPQDLAVPAAELLPRLIT 111

Query: 100  -------------VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM 146
                         V L +    Y+RL  L++      + K    + L+ L E   +G+I+
Sbjct: 112  GARLALMDDPVEWVALPTDRAAYERLSRLLTLGKRRAE-KGRCELTLADL-ETHAKGMIL 169

Query: 147  LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAY 205
            +          A        A + L   ++ F   +++    R+ G D+       +LA 
Sbjct: 170  I----------ALPTRDLARAARPLQRLQRRFPGSVFLGATPRYDGSDQAWFDACAKLAL 219

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS-QKDRPRVTPDHYLKNRSEMVSIF 264
                P+VA  + L       +  DVL  +     +     R +   +  LK   +M  ++
Sbjct: 220  RMNTPMVAAGDVLMHRAARRQLADVLTCLREGCTIDAIGTRAQPNAERRLKGAPDMARLY 279

Query: 265  SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
               P AL  T+EIA RC+F L   +         +  D  +  +  L   A  GL  R  
Sbjct: 280  RRHPAALRRTLEIAARCAFDLSELSYDY-----PDEHDGHEAPQQRLTRLAHEGLARRYP 334

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
             G           +  +  EL V+  + F+ YFL V D + +A+   I    GRGS A S
Sbjct: 335  GGV------PDKVQILMSKELRVVGELGFAAYFLTVHDIVVFARGRGIL-CQGRGSAANS 387

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            V  Y L ITD+ P    ++FERF++  R   PD D+DF  +RR+EVI+++  KYG  R  
Sbjct: 388  VLCYLLGITDVSPDLIGMVFERFISRYRGEPPDIDVDFEHERREEVIQWIYEKYGRHRAG 447

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP---NDPAHPVSLQAIADDSRFREA 501
               T    + +AA+R+VG+ + +       L   I    +  A P  ++ +  D + R  
Sbjct: 448  LCATVIHFRTRAAIREVGKVMGLSQDVTAALSGQIWGQAHGGADPERIRELGLDPQDRRL 507

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
                  +  ++       G  RH S H  G +I    L +L P+         V +++  
Sbjct: 508  AQTIGLIGEII-------GFPRHLSQHVGGFIITAGRLDELCPIENAAMEGRTVIEWDKD 560

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGI 620
             I+  G++K D L L  LT ++KS   L     +   L  +P +D  TY +L     +G+
Sbjct: 561  DIDALGILKVDVLSLGMLTCIRKSFALLESHEGISHTLDSVPQEDRATYRMLQRADAVGV 620

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLI 678
            FQ+ES      L  MQP    D++  V++ RPGPI   +   Y  R+  +EK     P +
Sbjct: 621  FQVESRAQMNFLPRMQPKTFYDLVIEVAIVRPGPIQGGMVQPYIRRRQQQEKPEPFGPAL 680

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGAS 737
              +  +T GV ++QEQ MQIA + +GY+  EAD LRR++    +   + + ++RFI G  
Sbjct: 681  HEVTAKTLGVPLFQEQAMQIAVVGAGYTAEEADRLRRSLASFRRMGTIGEHRDRFIRGML 740

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            +NG     A   F  +  FADYGF +SHAAA+A+++Y ++W+K H+P  F  A +  +  
Sbjct: 741  RNGYDLDAAQRCFTQIEGFADYGFPESHAAAFAMLTYVSSWLKCHHPAIFGCALLNSQPM 800

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARH 852
                  +  +D R+  I++ P  VN    D  +         +      IKG     A  
Sbjct: 801  GFYAPAQIVRDMREHGIEVRPICVNHSQWDNVLERRADGRLALRLGFRQIKGFREEDAGW 860

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            I  A  +  +   E    R         VLE L  A A    G +R   L  +  I+  A
Sbjct: 861  IAAARGNG-YPDPESLWLRAGLLP---SVLERLAEADAFAGMGLTRRDALWQVKAIRAPA 916

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
                         +FA        +         +       +   +      HP+++ +
Sbjct: 917  ----------PLPLFADPLDGEGLREPDVVLPPMHLGEEVVEDYVAMRLSLRAHPMELLR 966

Query: 973  PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            P +   GI  + E V    G ++ +  +V+++Q+  T  G  + ++T  +         +
Sbjct: 967  PDID--GIVPHSELVTAPLG-HVAVCGLVITRQRPGTASG--VIFMTLEDETGVSNVVVW 1021

Query: 1033 P 1033
            P
Sbjct: 1022 P 1022


>gi|251811096|ref|ZP_04825569.1| DNA polymerase III alpha chain [Staphylococcus epidermidis
            BCM-HMP0060]
 gi|251805393|gb|EES58050.1| DNA polymerase III alpha chain [Staphylococcus epidermidis
            BCM-HMP0060]
          Length = 1065

 Score =  552 bits (1423), Expect = e-154,   Method: Composition-based stats.
 Identities = 327/1026 (31%), Positives = 523/1026 (50%), Gaps = 85/1026 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI 
Sbjct: 3    AHLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +        T             V+L    +G + L +L S + + ++      +
Sbjct: 63   GMTIYLTDGLYTIET-------------VVLAKNNQGLKSLYQLSSAIMMRNKE----EV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRH 189
             + WL+    E LI++                 + AE         F     LY+    H
Sbjct: 106  PIEWLKRY-DEHLIII----------------FKEAELSHKQVIDAFEGKKELYL---NH 145

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +     +            V   ++ +L+E+D E    L A+  +T +         
Sbjct: 146  NSNNTLTGKR------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKETL 193

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +H+           S+    + N  EI   C   +  H  +LP+F+    +      ++
Sbjct: 194  DEHFPSIEELQTLNLSEDM--ITNANEIEELCQAEIAYHQSLLPQFVTPNGE----TSKD 247

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L    +  L               + Y  RL  E  +I  M F  YFLIV+D I +AK 
Sbjct: 248  YLWTILIHRLREWELND--------KTYFNRLKHEYKIITDMGFEDYFLIVSDLIHFAKT 299

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD DIDF   RR++
Sbjct: 300  HEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDIDIDFEDTRREK 359

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     +  
Sbjct: 360  VIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKLIPHKLGITLEE 419

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    F+     +   +R  E+S+KLEGL RH STHAAGI+I D+PL +  P+    
Sbjct: 420  AYQK--PEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQPLFKFAPLTTGD 477

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHET 608
                 +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  IP+DD + 
Sbjct: 478  TG--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINIDIEAIPYDDKKV 535

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++  
Sbjct: 536  FDLLSNGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRHNP 595

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             ++  +HP ++P+LK T GVIIYQEQ+M IA  ++G+S  EAD+LRRAM KK +  ++ +
Sbjct: 596  NQVAYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAMSKKNRAILESE 655

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            ++ FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F 
Sbjct: 656  RQHFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFY 715

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            A  ++  + + +K      +A+   I I+PP++N     +K  +  IY SL  IKG+G  
Sbjct: 716  ANILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYLSLGTIKGIGYQ 775

Query: 849  TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            + + I++    + P+    DF  R+  +  NR++LESL+  GA D FG +R  LLQ++D 
Sbjct: 776  SVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGKTRATLLQAIDQ 835

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +      VE++       +F       + K + E+       +  + E+  LGFY S HP
Sbjct: 836  VLDLNSDVEQDEM-----LFDL----LTPKQSYEEKEELPDQLLSDCEKEYLGFYISKHP 886

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            ++       K    G  +         I +       +Q +T+ G  + +VT ++     
Sbjct: 887  VE---KKFEKKQYLGIFQLSNGSHYQPILV--QFDHIKQIRTKNGQNMAFVTMNDGRTMM 941

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 942  DGVIFP 947


>gi|284159407|ref|YP_441003.3| error-prone DNA polymerase [Burkholderia thailandensis E264]
 gi|83653819|gb|ABC37882.1| DNA polymerase III, alpha subunit superfamily [Burkholderia
            thailandensis E264]
          Length = 1084

 Score =  552 bits (1422), Expect = e-154,   Method: Composition-based stats.
 Identities = 262/1064 (24%), Positives = 430/1064 (40%), Gaps = 93/1064 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++        IAITD  +L  A      A    + 
Sbjct: 21   PDYAELFCRSNFSFLHGASSAEELVERAKKHGYRGIAITDECSLAGAPRMHVAAKGHELP 80

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G   D+   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 81   LVVGAYFDVTPDD----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 135

Query: 129  VRICLSWLQEIGTEGLIM--LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L     E + +  +    +  +        + V + +L  F  LFG+R  + L
Sbjct: 136  YRLTPRMLAAPPPEFIHLRGVPDCFAILVPTY--PARADVLDAQLAWFGALFGERARLGL 193

Query: 187  -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             Q  R  D     QV        + +VA  +    +       D + A+        +  
Sbjct: 194  VQLQRALDGAHREQVRAAGERRGMRIVALGDVTMHTRSCKPLQDTMTAIRLGMP-IGECG 252

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     R+          +AL  T  +   C F L       P  I         
Sbjct: 253  HALAPNAEQHLRTRQRIAQLFPADALAQTCRMLDACHFSLDELRYEYPHEIVPAG----H 308

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + L  +  AG   R   G        +  RQR+ FEL +IA +K+  YFL V D ++
Sbjct: 309  TPTSYLAQETWAGARRRYPDGV------PEAVRQRIGFELALIADLKYEPYFLTVYDIVE 362

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I    GRGS A SV  Y L +T+++P + +LLFERF++ +R   PD D+DF   
Sbjct: 363  YARSKDIL-CQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFISRERGEPPDIDVDFEHQ 421

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K        
Sbjct: 422  RREEVIQYLYGKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGS 481

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               L   A            P +    +++ +L    RH S H+ G V+    L++LVP+
Sbjct: 482  RALLARFASV----GLDPDVPLIRTWAKLAARLLNFPRHLSQHSGGFVVSRGKLTRLVPV 537

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDL 598
                     V Q++   +E  GL+K D L L  L+ L ++ D +               L
Sbjct: 538  ENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRL 597

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI   
Sbjct: 598  EHIPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGG 657

Query: 659  VVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
             V+   +  +        +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD
Sbjct: 658  AVHPYLERRRIAAGEVEGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEAD 717

Query: 712  VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRRAM     K ++ K   R + G  + G S+  A  IFE +  F +YGF +SHAA++A
Sbjct: 718  ALRRAMAAWKRKGDLGKYHRRIVDGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFA 777

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  +
Sbjct: 778  KLAYASSWLKCHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSDWEASL 837

Query: 831  G----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE-----------DFC 869
                          +   L+ ++G+    AR I  A A  PF S++           D  
Sbjct: 838  EARPGEAPPDGRPAVRLGLSLVRGMSEEAARRIEAARAAGPFASVDELARRARLERRDLE 897

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            +   +                      +R   L                      ++ A 
Sbjct: 898  ALAAANAFATLA--------------GNRRDALWQAVAAV------------PQRDLLAG 931

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
                 + K           +     +   +G   + HP+ + +P L    +         
Sbjct: 932  APIDEAVK---PALGAPTEADDVFADYHTIGLTLNRHPVALLRPALDARRLSSAAALRDR 988

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              G   R   +V ++Q   T KG  + +VT  +          P
Sbjct: 989  RNGQLARACGLVTARQMPGTAKG--VLFVTLEDETGCVNVIVRP 1030


>gi|320011646|gb|ADW06496.1| DNA polymerase III, alpha subunit [Streptomyces flavogriseus ATCC
            33331]
          Length = 1161

 Score =  552 bits (1422), Expect = e-154,   Method: Composition-based stats.
 Identities = 268/1067 (25%), Positives = 451/1067 (42%), Gaps = 66/1067 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              F HL   S +SL  GA     + ++ A     A+A+TD ++L  A+ F++     G++
Sbjct: 2    SGFTHLHTVSGFSLRYGASHPERLAERAAGRGMDALALTDRDSLSGAVRFARACEKEGVR 61

Query: 69   PIIGCQLDIDMQ--------DNLKMTNQGKTPFPTVPSIVLLVST-AEGYQRLIELVSRM 119
            PI G +L +  Q                G     + P +  L    A G+  L  LV+  
Sbjct: 62   PIFGTELAVAPQVTEGAPAHRPRTPARGGAFVDESAPRVTFLARDGARGWAELCRLVTAA 121

Query: 120  YL--LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
            +    D+G          L     EGL +L G  +  +  A        A   L+ ++++
Sbjct: 122  HSGAADRGAGRPLAGRDAL---PAEGLTVLLG-PASEVGAALAAGRPDRAAALLVPWREI 177

Query: 178  FGDRLYVNLQRHRGYDR-----YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +GD L +    H             ++ V  A    +  V TN   +         DVL 
Sbjct: 178  YGDALRLEAVHHGREGTGPGSLRLAARTVGFAAEQGVRAVLTNAVRYADPGQGPVADVLD 237

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTV-EIARRCSFILQVHAPI 291
            +      V  +  P  + + +LK+ + M      +  A         R  +         
Sbjct: 238  SARRLVPVDPRRTPLDSGERWLKDDAAMRGTAERIASAAGLGRGAGERLLAETRHTADAC 297

Query: 292  LPRFIEKECDDIQKEEENEL----RNKAVAGLEVRLAQGAIAKGYH-AQDYRQRLDFELN 346
                            E  L    R  A   L  R A G +  GY   +DY +R+  EL+
Sbjct: 298  RVDPARDLGLGSVHFPEPRLVGAERRTAQRVLATRAAAGMVRHGYDRRRDYWERMHRELD 357

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            +IA   F+ YFL V+  +   K   I V   RGSGAGS+  + L I   DP+   LL ER
Sbjct: 358  IIAHHGFATYFLTVSQVVDDVKGMGIRVA-ARGSGAGSLVNHLLGIAHADPIEHGLLMER 416

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL+  R  +PD D++    RR EV R + +++G ERVA +    + + + A+RDVG AL 
Sbjct: 417  FLSKRRFVLPDIDVESA--RRLEVYRAIIDRFGTERVAAVSMPETYRVRHAIRDVGAALS 474

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
            M  ++ DRL K  P+  A      A+ +    R    +     RL ++ + L+ L R  +
Sbjct: 475  MDPAETDRLAKAFPHIRARDA-RAAMEELPELRAVAGSKEKYGRLWDLVESLDALPRGIA 533

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRS----------DLPVTQFNMKWIEKAGLIKFDFLGL 576
             H  G+++ D  L +  P+                 +P++QF+   +E  GL+K D LG+
Sbjct: 534  MHPCGVLLSDDSLLRRTPVVPTSGEIPSLDGGGGSPIPMSQFDKDDVEHLGLLKLDVLGV 593

Query: 577  KTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            +  + +  ++       G ++DL  +P  D ETY L+    TLG FQ+ES G R  +  +
Sbjct: 594  RMQSAMAHAVTELKRASGQELDLDAVPQGDPETYRLIRDAETLGCFQIESPGQRDLVGRL 653

Query: 636  QPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
            QP    D++  +SL+RPGP+   +   +   ++G+  +   HP ++  L++T GV+++ E
Sbjct: 654  QPATFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRYPHPDLEGALRDTYGVVVFHE 713

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            Q++++  +++G    EAD +RR +     E   + +  F   A++      + V  +E++
Sbjct: 714  QIIEMVNIMTGCGRGEADRVRRGLSD--PESQARIRVWFARRAAQRKYDAQVIVRAWEII 771

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +    DAR+  
Sbjct: 772  EAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARRRG 830

Query: 814  IQIMPPSVNTPCVDFKV--------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
            + ++P  VN      ++            +  +L+ + G+       I    + +P+ SL
Sbjct: 831  VPVLPLDVNRSAAAHRIELVSGGKGEKWGLRLALSDVHGISEAEVARI---ESGQPYSSL 887

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DF  R       +   E L   GALD FG +R  LL  L  + +  +            
Sbjct: 888  LDFWQRARP---GKPAAERLAQVGALDSFGANRRDLLLHLSELHRAQRRSGSGAAGAQLP 944

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            +     G  +  + L      N + R   E  VL    S H +  +   L ++G    + 
Sbjct: 945  LGG---GHRTGSVGLPDL---NDAERLSAELGVLSLDVSRHLMGDHHGFLEELGAVSAKR 998

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                  G  + +A   V+ Q    R G R+ + T  +     +  FF
Sbjct: 999  LREARHGETVLVAGAKVATQTPPVRSGRRVIFTTLDDGTGLVDLAFF 1045


>gi|188992639|ref|YP_001904649.1| hypothetical protein xccb100_3244 [Xanthomonas campestris pv.
            campestris str. B100]
 gi|254777928|sp|B0RY89|DNAE2_XANCB RecName: Full=Error-prone DNA polymerase
 gi|167734399|emb|CAP52609.1| dnaE1 [Xanthomonas campestris pv. campestris]
          Length = 1082

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 264/1047 (25%), Positives = 452/1047 (43%), Gaps = 88/1047 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + + A G++
Sbjct: 46   PAYAELHCLSDFSFLRGASSAEQLFARAHHCGYSALAITDECSLAGIVRGLEASRATGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                      VLLV  A GY +L  +++       GK +
Sbjct: 106  LIVGSEFTLID----------------CTRFVLLVENAHGYPQLCSVITTGR-RAAGKGA 148

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+  + ++    +   ++ G     +   +       AE+     +++F +R ++ ++ 
Sbjct: 149  YRLGRAEVEAHFRD---VVPG-----VFALWLPGDQPQAEQGA-WLQRVFAERAFLAVEL 199

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D   R   +  LA    +  +A+ +       D    D L A+ H T+        
Sbjct: 200  HREQDDAARLQALQALAQQLGMSALASGDVHMAQRRDRIVQDTLTAIRH-TLPLADCGAH 258

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +  +     R             L+ +VE+A+RC+F L       PR +  +        
Sbjct: 259  LFRNGERHLRPRRALGNIYPHALLQASVELAQRCTFDLSKVQYTYPRELVPQG----HTP 314

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR    AG+  R  +GA A          ++D EL +IA   +  +FL V D +++A
Sbjct: 315  ASYLRQLTEAGMRERWPEGAPAN------VVAQIDSELELIAYKGYEAFFLTVQDVVRFA 368

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  +I    GRGS A S   YAL IT ++P    LL  RFL+ +R   PD D+DF  +RR
Sbjct: 369  RAQHIL-CQGRGSSANSAVCYALGITAVNPSETRLLMARFLSKERDEPPDIDVDFEHERR 427

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L            
Sbjct: 428  EEVLQYVYTKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGDTP 487

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              Q IA+        LA+P ++++L +++ L    RH S H  G VI D PLS LVP+  
Sbjct: 488  MEQRIAE----AGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPLSMLVPVEN 543

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
               +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P +D 
Sbjct: 544  AAMADRTIIQWDKDDLETMQLLKVDCLALGMLTCIRKTLDLVRGHRGRDYTIATLPGEDA 603

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 604  ATYKMIQRADTVGVFQIESRAQMAMLPRLKPREFYDLVIEVAIVRPGPIQGDMVHPYLRR 663

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-E 723
            + G E +    P ++ +L  T G+ ++QEQVM++  + +GY+ SEAD LRR+M    +  
Sbjct: 664  RQGYEPVSFPSPGVEEILGRTLGIPLFQEQVMELV-IHAGYTDSEADQLRRSMAAWRRGG 722

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +M+  + R     +  G +      IFE +  F  YGF +SHAA++A + Y + W+K H 
Sbjct: 723  DMEPHRVRIRELMAGRGYAPEFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRHE 782

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQD-----ARQFNIQIMPPSVNTPCVDFKVGDN----- 833
            P  F    +  +        +  QD       +  ++++P  V     D  +        
Sbjct: 783  PAAFACGLLNAQPMGFYSASQIVQDARRGSPERQRVEVLPVDVLHSDWDNILVGGRPWHS 842

Query: 834  --------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                     I   L  + G+       I+ A A +PF  + D C R     L+ +   +L
Sbjct: 843  DADPGEQPAIRLGLRQVSGLSEKVVERIVAARAQRPFADIGDLCLRA---ALDEKARLAL 899

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              AGAL     +R     ++  ++     +                   S      +   
Sbjct: 900  AEAGALQSMVGNRNAARWAMAGVEARRPLL-----------------PGSPAERAVELPA 942

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
              +      + R +G     HP+ + +P + +  I G  E  A   G+ + +A +V  +Q
Sbjct: 943  PRAGEEILADYRAVGLSLRQHPMALLRPQMLQRRILGLRELQARRHGSGVHVAGLVTQRQ 1002

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  T KG+   +VT  +         +
Sbjct: 1003 RPATAKGT--IFVTLEDEHGMINVIVW 1027


>gi|325917073|ref|ZP_08179309.1| DNA polymerase III, alpha subunit [Xanthomonas vesicatoria ATCC
            35937]
 gi|325536737|gb|EGD08497.1| DNA polymerase III, alpha subunit [Xanthomonas vesicatoria ATCC
            35937]
          Length = 1083

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 260/1051 (24%), Positives = 455/1051 (43%), Gaps = 95/1051 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S +S L GA S   +  +       A+AITD  +L   +   + + A G++
Sbjct: 46   PDYAELHCLSDFSFLRGASSAEQLFARARDCGYSALAITDECSLAGIVRGLEASRATGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                      VLLV  A GY +L  L++        K +
Sbjct: 106  LIVGSEFTLVDG----------------TRFVLLVENAHGYPQLCGLITTAR-RAASKGA 148

Query: 129  VRICLSWLQEIGTE---GLIML-TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             R+  + ++    +   G+  L   G+   + +                 +++FG+R ++
Sbjct: 149  YRLGRAEVEAQFRDVAPGVFALWLPGAQPQVGQG-------------AWLQQVFGERAFL 195

Query: 185  NLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             ++ HR  D   R   +  LA    +  +A+ +       +    D L A+ H T+   +
Sbjct: 196  AVELHREQDDVARLQALQALAQQLGMTALASGDVHMAQRRERIVQDTLTAIRH-TLPLAE 254

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                +  +     R+            L+ TVE+A+RC+F +   +   PR +  E    
Sbjct: 255  CGAHLFRNGERHLRTRRALGNIYPDALLQATVELAQRCTFDISKISYSYPRELVPE---- 310

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +    + LR     G+  R   G       +   R+ ++ EL +IA  ++  +FL V D 
Sbjct: 311  EHTPTSYLRQLTEEGIRERWPDG------ISTKVREDIEKELALIALKRYEAFFLTVQDV 364

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+   I    GRGS A S   YAL IT ++P    LL  RFL+  R   PD D+DF 
Sbjct: 365  VRFARSRQIL-CQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFE 423

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV++YV NKYG ER A   T    + K+A+RDV +A  +P  Q+  L        
Sbjct: 424  HERREEVLQYVYNKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGN 483

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                  Q I +        LA+P ++++L +++ L    RH S H  G VI D PLS LV
Sbjct: 484  GDTPMEQRIEE----AGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPLSLLV 539

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP 602
            P+     ++  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P
Sbjct: 540  PVENAAMANRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRGHRGRDYSIATLP 599

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+ 
Sbjct: 600  GEDAPTYKMIQHADTVGVFQIESRAQMAMLPRLKPAVFYDLVIEVAIVRPGPIQGDMVHP 659

Query: 663  --NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
               R+ G+E++    P ++ +LK T GV ++QEQVM++    + Y+ SEAD LRR+M   
Sbjct: 660  YLRRRQGREEVNYPSPEVEDILKPTLGVPLFQEQVMELLMHAAEYTESEADNLRRSMAAW 719

Query: 721  IK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
             +  +M++ + R      K G +      IFE +  F  YGF +SHAA++A + Y + W+
Sbjct: 720  RRGGDMEQHRARVRERMQKRGYASAFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWL 779

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQD-----ARQFNIQIMPPSVNTPCVDFKVGDN- 833
            K H P  F    +  +        +  QD       +  ++++P  V     D  +    
Sbjct: 780  KRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSPERARVEVLPVDVLHSDWDNTLVGGR 839

Query: 834  ------------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                         I   +  + G+    A+ I+ A   + F  + D C R     L+ + 
Sbjct: 840  PWRSDADPGEQPAIRLGMRQVAGLSEVVAQRIVAARTQRTFADIGDLCLRA---ALDEKA 896

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
              +L  AGAL     +R     ++  ++     +                   S +    
Sbjct: 897  RLALAEAGALQGMVGNRNAARWAMAGVEARRPLL-----------------PGSPEERPV 939

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            +F    +      + R +G     HP+ + +P +++  I G  +      G+ + +A +V
Sbjct: 940  EFEAPRAGEEILADYRSVGLSLRQHPMALLRPQMQQRRILGLRDLRGRRHGSGVHVAGLV 999

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +Q+  T KG+   +VT  +         +
Sbjct: 1000 TQRQRPATAKGT--IFVTLEDEHGMINVIVW 1028


>gi|257140342|ref|ZP_05588604.1| error-prone DNA polymerase [Burkholderia thailandensis E264]
          Length = 1072

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 262/1064 (24%), Positives = 430/1064 (40%), Gaps = 93/1064 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++++        IAITD  +L  A      A    + 
Sbjct: 9    PDYAELFCRSNFSFLHGASSAEELVERAKKHGYRGIAITDECSLAGAPRMHVAAKGHELP 68

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             ++G   D+   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69   LVVGAYFDVTPDD----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129  VRICLSWLQEIGTEGLIM--LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             R+    L     E + +  +    +  +        + V + +L  F  LFG+R  + L
Sbjct: 124  YRLTPRMLAAPPPEFIHLRGVPDCFAILVPTY--PARADVLDAQLAWFGALFGERARLGL 181

Query: 187  -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             Q  R  D     QV        + +VA  +    +       D + A+        +  
Sbjct: 182  VQLQRALDGAHREQVRAAGERRGMRIVALGDVTMHTRSCKPLQDTMTAIRLGMP-IGECG 240

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     R+          +AL  T  +   C F L       P  I         
Sbjct: 241  HALAPNAEQHLRTRQRIAQLFPADALAQTCRMLDACHFSLDELRYEYPHEIVPAG----H 296

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + L  +  AG   R   G        +  RQR+ FEL +IA +K+  YFL V D ++
Sbjct: 297  TPTSYLAQETWAGARRRYPDGV------PEAVRQRIGFELALIADLKYEPYFLTVYDIVE 350

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I    GRGS A SV  Y L +T+++P + +LLFERF++ +R   PD D+DF   
Sbjct: 351  YARSKDIL-CQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFISRERGEPPDIDVDFEHQ 409

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K        
Sbjct: 410  RREEVIQYLYGKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGS 469

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               L   A            P +    +++ +L    RH S H+ G V+    L++LVP+
Sbjct: 470  RALLARFASV----GLDPDVPLIRTWAKLAARLLNFPRHLSQHSGGFVVSRGKLTRLVPV 525

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDL 598
                     V Q++   +E  GL+K D L L  L+ L ++ D +               L
Sbjct: 526  ENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRL 585

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI   
Sbjct: 586  EHIPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGG 645

Query: 659  VVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
             V+   +  +        +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD
Sbjct: 646  AVHPYLERRRIAAGEVEGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEAD 705

Query: 712  VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRRAM     K ++ K   R + G  + G S+  A  IFE +  F +YGF +SHAA++A
Sbjct: 706  ALRRAMAAWKRKGDLGKYHRRIVDGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFA 765

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  +
Sbjct: 766  KLAYASSWLKCHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSDWEASL 825

Query: 831  G----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE-----------DFC 869
                          +   L+ ++G+    AR I  A A  PF S++           D  
Sbjct: 826  EARPGEAPPDGRPAVRLGLSLVRGMSEEAARRIEAARAAGPFASVDELARRARLERRDLE 885

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            +   +                      +R   L                      ++ A 
Sbjct: 886  ALAAANAFATLA--------------GNRRDALWQAVAAV------------PQRDLLAG 919

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
                 + K           +     +   +G   + HP+ + +P L    +         
Sbjct: 920  APIDEAVK---PALGAPTEADDVFADYHTIGLTLNRHPVALLRPALDARRLSSAAALRDR 976

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              G   R   +V ++Q   T KG  + +VT  +          P
Sbjct: 977  RNGQLARACGLVTARQMPGTAKG--VLFVTLEDETGCVNVIVRP 1018


>gi|301301229|ref|ZP_07207385.1| DNA polymerase III, alpha subunit [Lactobacillus salivarius
            ACS-116-V-Col5a]
 gi|300851228|gb|EFK78956.1| DNA polymerase III, alpha subunit [Lactobacillus salivarius
            ACS-116-V-Col5a]
          Length = 1097

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 304/1025 (29%), Positives = 501/1025 (48%), Gaps = 47/1025 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV SSYSLL+  L +   +         A+ +TD N+++  L+F  +   AGI+PI
Sbjct: 2    YAPLQVLSSYSLLQSPLRIPEYVKLGKELGYNALVLTDINSMYGVLDFYHECVKAGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L              ++        + +   + GYQ L+ + S+            
Sbjct: 62   IGITL--------------QSGDDEY---IFIAKNSNGYQNLMNISSKRLTAVDENYKNI 104

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              L+ + E   + +++L    S         +     +  +        +  Y  +    
Sbjct: 105  FKLADITEYLQDVIVILK--PSYLTVNDIISDQVTELQTLVSA-----AETTYYGV---N 154

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              DR   +  +  A   +L  +      +L E DY +  VL A+     V+     +   
Sbjct: 155  PNDRDAINNDLMAAEKLQLETILLTPVKYLKERDYFSTKVLQAIGTGENVNPNWNLKSDG 214

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            ++              L  A +N + +  +C+  L      LP F E          E+ 
Sbjct: 215  NYLHTPEEYERLGADYLSSAYQNAINMIAQCNLTLNFPKTQLPHFKETNG----LSSEDF 270

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL  R+A+  I      ++Y+ RLD+EL+VI RM F  YFLIV D   +A +N
Sbjct: 271  LRKLCQEGLAKRIAEENIKNQ---EEYQSRLDYELSVIHRMGFDDYFLIVWDVTNFAHEN 327

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            NI  GPGRGS AGS+ +Y L ITDIDP+++ L+FERFLN +R  MPD D+D    +RD +
Sbjct: 328  NILTGPGRGSAAGSLVSYTLYITDIDPIKYDLIFERFLNEERAQMPDIDLDIPDIKRDTI 387

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I Y+  KYG + +AQIITFG+L+ K  LRDV R   +   + D   K IP +    +   
Sbjct: 388  IEYLHQKYGQQHMAQIITFGTLKTKQVLRDVARVFDLKTYEADAWSKAIPKEYGITLKEA 447

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
              A     +     +     L E +  LEGL RH STH+AGI++ D  L   VP+     
Sbjct: 448  -YASSQSLKNLVADNSKNRLLFETAIALEGLPRHYSTHSAGIILSDDDLVDHVPVQ-IGG 505

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
              + ++QF    +E+ GL+K DFLGL+ L++L+ ++  + +   +  D+  I  DD ET 
Sbjct: 506  DGILMSQFAKNQVEEVGLLKMDFLGLRNLSILENTITLIKKGYHIDFDIRKINLDDPETL 565

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             +     T GIFQ ES+G+R  L  ++P   ED+ A+ +LYRPGPI NI  +  RK+G+ 
Sbjct: 566  KIYQNAETSGIFQFESAGIRGVLTKLKPTSFEDVAAVNALYRPGPIQNIDEFIARKHGER 625

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I      ++ +LK+T G+++YQEQVMQ+A  + G++L +AD LRRAM KK  + + + +
Sbjct: 626  PITYPSKELEGILKQTYGIMVYQEQVMQVASTMGGFTLGQADSLRRAMSKKKHDIISRME 685

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI+GA K G +  +A  ++  + +F DYGFN+SHA AY+ +S++ A++K HYP  F A
Sbjct: 686  VMFINGAMKKGYTHEVAKKVYAYIMEFGDYGFNRSHAVAYSKMSFELAYIKAHYPAAFFA 745

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +   + N  K K +  +A+   +++  P +N     + + +  IY+ L+ IK +    
Sbjct: 746  ALLNSVIGNPRKTKDYVLEAKNKGVRVHHPDINISQSLYILRNGEIYFGLSCIKSLRKNF 805

Query: 850  ARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++       F ++EDF  R+D + L R +++ L+++G  D FG SR +LL  L  +
Sbjct: 806  LQDILQERKRSGIFKNMEDFLQRIDKRYLKRELIDILIYSGVFDTFGQSRKELLAMLPRL 865

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                +    N       +F+      +    ++     ++    E E   LG Y SGHP+
Sbjct: 866  LSNIELSGNNVE-----LFSMLAPKKTTVEKIKI----SNDELLEKENYYLGAYLSGHPV 916

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            + Y  ++         +   + +   + +   +   +  +T+ GS++ +VT ++     +
Sbjct: 917  EKYTELIYLTNSTRVSQINESNKDKYVSMILQIKVIKIIRTKNGSQMAFVTAADQTGNMD 976

Query: 1029 ANFFP 1033
              FFP
Sbjct: 977  LTFFP 981


>gi|325921687|ref|ZP_08183521.1| DNA polymerase III, alpha subunit [Xanthomonas gardneri ATCC 19865]
 gi|325547827|gb|EGD18847.1| DNA polymerase III, alpha subunit [Xanthomonas gardneri ATCC 19865]
          Length = 1083

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 255/1047 (24%), Positives = 452/1047 (43%), Gaps = 87/1047 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + + A G++
Sbjct: 46   PAYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEASRATGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                      VLLV  A GY +L  L++        K +
Sbjct: 106  LIVGSEFTLVDG----------------TRFVLLVENAHGYPQLCALITTAR-RAASKGT 148

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+  + ++    +         +  +   +   +   AE+     +++FG+R ++ ++ 
Sbjct: 149  YRLGRAEVEAQFRD--------VAPGVFAVWMPGAQPQAEQGA-WLQQVFGERAFLAVEL 199

Query: 189  HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D   R   +  LA    +  +A+ +       +    D L A+ H ++   +    
Sbjct: 200  HREQDDAVRLLALQLLAQQLGMTALASGDVHMAQRRERIVQDTLTAIRH-SLPLAECGAH 258

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +  +     R+            L+ +V +A+RC+F +       P+ +  E        
Sbjct: 259  LFRNGERHLRTRRALGNIYPDALLQASVGLAQRCTFDISKLEYTYPKELVPEG----HTP 314

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR     G+  R   G           R  ++ EL +IA   +  +FL V D +++A
Sbjct: 315  ASYLRLLTETGMRERWPNG------TPAKVRADIEKELALIAHKNYEAFFLTVQDVVRFA 368

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  +I    GRGS A S   YAL IT ++P    LL  RFL+  R   PD D+DF  +RR
Sbjct: 369  RDQHIL-CQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFEHERR 427

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV +KYG ER A   T    + K+A+RDV +A  +P  Q+  L            
Sbjct: 428  EEVLQYVYSKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGDTP 487

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              Q I +        LA+P ++++L +++ L    RH S H  G VI D PLS LVP+  
Sbjct: 488  MEQRIEE----AGFDLANPLINKILAVTEHLRDHPRHLSQHVGGFVISDEPLSMLVPVEN 543

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
               ++  + Q++   +E   L+K D L L  LT ++K+L+ ++  RG    ++ +P +D 
Sbjct: 544  AAMANRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLELVSGHRGRDYTIATLPGEDA 603

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 604  PTYKMIQRADTVGVFQIESRAQMAMLPRLKPVVFYDLVIEVAIVRPGPIQGDMVHPYLRR 663

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-E 723
            + G+E++    P ++ +LK T GV ++QEQVM++    + Y+ SEAD LRR+M    +  
Sbjct: 664  RQGREEVNYPSPEVEEILKPTLGVPLFQEQVMELLMHAAEYTESEADNLRRSMAAWRRGG 723

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +M++ + R        G + T    IFE +  F  YGF +SHAA++A + Y + W+K H 
Sbjct: 724  DMEQHRTRVRERMQNRGYASTFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRHE 783

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQD-----ARQFNIQIMPPSVNTPCVDFKVGDN----- 833
            P  F    +  +        +  QD       +  ++++P  V     +  +        
Sbjct: 784  PAAFACGLLNAQPMGFYSASQIVQDARRGSPERARVEVLPVDVLHSVWNNTLVGGRPWCS 843

Query: 834  --------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                     I   +  + G+    A  I+ A A + F  + D C R     L+ +   +L
Sbjct: 844  DEDPGEQPAIRLGMRQVAGLSEGVATRIVAARAQRGFADIGDLCLRA---ALDEKARLAL 900

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              AGAL     +R     ++  ++     +                   S +    +F  
Sbjct: 901  AEAGALQGMVGNRNAARWAMAGVEARRPLL-----------------PGSPEERPVEFEA 943

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
              +      + R +G     HP+ + +P +R+  I G  E      G+ + +A +V  +Q
Sbjct: 944  PRAGEDILADYRSVGLSLRQHPMALLRPQMRQRRILGLRELQGRSHGSGVHVAGLVTQRQ 1003

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  T KG+   +VT  +         +
Sbjct: 1004 RPATAKGT--IFVTLEDEHGMINVIVW 1028


>gi|90420676|ref|ZP_01228582.1| DNA polymerase III, alpha subunit [Aurantimonas manganoxydans
            SI85-9A1]
 gi|90334967|gb|EAS48728.1| DNA polymerase III, alpha subunit [Aurantimonas manganoxydans
            SI85-9A1]
          Length = 1171

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 260/1061 (24%), Positives = 434/1061 (40%), Gaps = 87/1061 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  + V S +S L GA     ++          + I D N +   +   Q A  A +  
Sbjct: 11   AFPEIGVASCFSFLAGASQPEELVVTAHRLGLAGLGIADRNTVAGVVRAHQAAREAELPY 70

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
              G +L                     P I        G+ RL  L+SR  L    K S 
Sbjct: 71   APGARLVFS---------------DATPDIFAYPRDRAGWGRLCRLLSRGNLR-ATKGSC 114

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR-------LLTFKKLFGDRL 182
             + L+ L E G EGL       +    +A        A          L   ++ FG  +
Sbjct: 115  ILTLADLLEWG-EGL-----NLAMIAPQALGCGQDGDAAAMEAGLADPLHRLREAFGGAV 168

Query: 183  YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV-V 240
             + +   H G D+ R ++   LA     P++ATN++   +       DV+ A+       
Sbjct: 169  RLAVAPAHDGLDQRRMARAAHLAARCRTPMLATNDAFHHAPGRRRLQDVMTAIREHVPLA 228

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                      + +LK   EM  +F   PEA+  T        F L+  A   P    K  
Sbjct: 229  EAGFLLARNAERHLKAPHEMERLFRHSPEAIAETGRFFAELQFDLKSLAYEYPDEALK-- 286

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              + +    ELR+ A  G   R  +G  A          R+D+EL +I  +++  YFL V
Sbjct: 287  --LSRSPAEELRHLAHEGARWRYPEGVPAS------VTTRIDYELKIIGELQYEPYFLTV 338

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
               ++ A++  I    GRGS A SV  + + +T++ P R  LLFERF++ DR   PD DI
Sbjct: 339  HHIVKGAREKGIL-CQGRGSAANSVVCFCIGVTEVSPERAGLLFERFISSDRREPPDIDI 397

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EVI+Y+   YG +  A   T  + +A++A R+VG+A  +    V  L   + 
Sbjct: 398  DFEHERREEVIQYIYEHYGRDNAAIAATVITYRARSAAREVGKAFGLSEDAVSALSGSVW 457

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
               +  +       ++        D +   +L  S +L G  RH S H  G VI    + 
Sbjct: 458  GYSSADLG----EREAAAAGLSAKDATTANVLSFSAELSGFPRHLSQHVGGFVITKGRID 513

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV---D 597
            ++VP+         + +++   +++ G++K D L L  L+ L+++ D L Q         
Sbjct: 514  EVVPILNTGMEGRTIVEWDKDDLDELGILKIDILALGMLSCLRRAFDLLQQHYDLPLTLA 573

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                  DD  TY ++    TLG+FQ+ES      L  ++PDC  D++  V++ RPGPI  
Sbjct: 574  DLSKAQDDQPTYAMIQRADTLGVFQIESRAQMTMLPKLRPDCFYDLVIEVAIVRPGPIQG 633

Query: 658  IVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V+    RK G E +      +  +L  T GV ++QEQ M+IA + +G++ +EAD LRR
Sbjct: 634  DMVHPYLRRKMGLEPVTFPKEELREVLGRTLGVPLFQEQAMKIAIVAAGFTPNEADRLRR 693

Query: 716  AMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AM    +   +   +++ + G    G  +  A   F+ +  F +YGF +SHAA++A++ Y
Sbjct: 694  AMATFRRVGTIHTFQKKMVEGMVARGYERDFAERCFKQIEGFGEYGFPESHAASFALLVY 753

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831
             + W+K HYP  F AA +  +        +  +DAR+  +++ P  +N    D  +    
Sbjct: 754  ASCWLKCHYPDVFAAALLNAQPMGFYAPSQIVRDAREHGVEMRPVDINRSGWDQSLEAAP 813

Query: 832  -------------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
                                + +      +KG+G    R ++E      +DS+ D   R 
Sbjct: 814  FDPGRMKARNAGMRDHIRTRHAVRLGFRQVKGLGEADMRTLVEVRGAG-YDSVRDLWLR- 871

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
                L R  +E L  A A    GYSR   L +   +                 +F     
Sbjct: 872  --SGLKRATIERLADADAFASLGYSRRDALWACRALDAKGSSER-------LPLFEQAAT 922

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                                 N+ R L      HP+   +  L  + +   E       G
Sbjct: 923  RDLQAEPDATLPPMPVGEEVINDYRFLSLSLKAHPVSFVRRDLDALRVIPDERLERLRSG 982

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + + +A +V+ +Q+  + KG  + ++T  +         +P
Sbjct: 983  SWVTVAGLVLIRQRPGSAKG--VIFMTIEDETGTANIIVWP 1021


>gi|121997266|ref|YP_001002053.1| DNA polymerase III subunit alpha [Halorhodospira halophila SL1]
 gi|121588671|gb|ABM61251.1| DNA polymerase III, alpha subunit [Halorhodospira halophila SL1]
          Length = 1044

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 260/1048 (24%), Positives = 426/1048 (40%), Gaps = 88/1048 (8%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              SP++  L   S+++   GA     ++ + A     A+AITD  ++  A+   Q A + 
Sbjct: 7    TTSPAYAELHCLSAFTFRRGASQPEELVARAAQLDYHALAITDECSVAGAVRAWQAARSH 66

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G+  I+G +L                     P +VLL  T + Y +L  L+S        
Sbjct: 67   GLHLIVGTEL----------------RPADGPRVVLLAPTRQAYGQLCALISLARGRAA- 109

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            K    +    L     +            I  A     ++  E +   F + F  R Y+ 
Sbjct: 110  KGGYHLTREDLDSGAPD-------CLGLLIPDAPHQEGTET-EAQTRWFARRFAGRGYLA 161

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNN-SLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            ++   G D     ++++               +   +      HD L A+ H   V++  
Sbjct: 162  VELLGGPDDAARCRMLEARAAAAGLPAVAATGAEMHTRGRRALHDTLTAIRHGRPVAEVT 221

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                +   +   R             L  +  IA RC+F L       P  +  E     
Sbjct: 222  AHLASNGEH-HLRRRPALAERYPHHLLAQSTAIADRCTFSLDELRYEYPEEVVPEG---- 276

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                  LR     G   R   G  A        +   + EL +IA + +  YFL V D +
Sbjct: 277  TTPTAHLRQLVETGARRRYPDGVPA------AVQAGYERELAIIAELGYEHYFLTVHDLV 330

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             +A+   I    GRGS A SV  + L IT++DP   S+LFERF++ +R   PD D+DF  
Sbjct: 331  AFARGRGIL-CQGRGSAANSVVCFCLGITEVDPAHQSVLFERFVSRERGEPPDIDVDFEH 389

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR+EVI+Y+  +YG  R A   T  + + ++A+RDV +AL +    V+RL K +     
Sbjct: 390  HRREEVIQYIYQRYGRHRAALAATVIAYRPRSAVRDVAKALGLERESVERLAKGLQPWDH 449

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
               + + +    R        P   RL  ++ +L G  RH S H  G VI   P+++LVP
Sbjct: 450  SAANDEQL----RQAGLNPDGPIARRLRILAGELLGFPRHLSQHVGGFVIARCPITELVP 505

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF 603
            +         V Q++   +E  GL+K D L L  L++++++ + +   RG    L+ +P 
Sbjct: 506  VEPAAMDGRTVIQWDKDDLEALGLLKVDVLALGMLSVIRRAFELIHHWRGHAWTLATLPP 565

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662
             D  TY ++    TLG+FQ+ES      L  M+P C  D++  +S+ RPGPI   +V+  
Sbjct: 566  ADPATYAMIQRADTLGVFQIESRAQMAMLPRMRPRCFYDLVIEISIVRPGPIQGDMVHPY 625

Query: 663  -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R+ G E +      +  +L+ T GV I+QEQ M++A + +G++  EAD LRR+M    
Sbjct: 626  LRRREGSEPVDYPSEEVRGVLERTLGVPIFQEQAMELAVVAAGFTPDEADRLRRSMAAWR 685

Query: 722  KEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            K+      +ER I G  + G S   A  ++  +  F +YGF +SHAA++A++ Y +AW+K
Sbjct: 686  KKGGLAPLRERLIEGMRERGYSSAYAERLYRQIEGFGEYGFPESHAASFALLVYASAWLK 745

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--------- 831
             H P  F AA +  +        +  +D R+ ++ + P  V        +          
Sbjct: 746  CHEPAAFAAALLNSQPMGFYAPAQIIRDTREHDVAVRPVDVRFSEPACTLEPPQPPDSPS 805

Query: 832  ----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +   L  I+G+ T  A  I  A +  PF  + D   R     L+R  + +L  
Sbjct: 806  GAGSQPALRLGLNQIRGLSTAGAERIAAARSRAPFTGVNDLKRRAH---LSRADIHALAR 862

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL----EKF 943
            A AL      R     +                     + A E                 
Sbjct: 863  ADALRGIAGHRRAASWAA--------------------LGADEGTALIPPPPAEAGRPSL 902

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
            +    S     +    GF    HPL   +  LR    +   E      G +IR A +V++
Sbjct: 903  APARESQAVLADYASTGFTLRRHPLAFLRRQLRARRYRSAAELATAEDGRSIRAAGLVIN 962

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +Q+  +  G  I +VT  +         
Sbjct: 963  RQRPGSAGG--ITFVTLEDETGRINLVV 988


>gi|120553905|ref|YP_958256.1| DNA polymerase III, alpha subunit [Marinobacter aquaeolei VT8]
 gi|120323754|gb|ABM18069.1| DNA polymerase III, alpha subunit [Marinobacter aquaeolei VT8]
          Length = 1039

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 252/1034 (24%), Positives = 432/1034 (41%), Gaps = 62/1034 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              +  L   S+++ L GA   + + ++ A     AIAITD  ++            + ++
Sbjct: 3    SDYAELFCFSNFTFLTGASHPHELAEQAAELGYRAIAITDACSVAGIPRAWAALKDSPVK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I G   ++                   P  +LL  T EGY +L +L++      + K  
Sbjct: 63   LITGSWFELSD---------TPEGATAPPRFILLARTREGYGQLCQLITTGRRRAE-KGQ 112

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+    ++    +  + L       +       ++  A       +++F  RL +   R
Sbjct: 113  YRLFTRDIETHSLDHCLCL------WLPPLVSQTNAHQALITGEWLQRIFEHRLRLAATR 166

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                 +  +  +V  LA      +VAT        E     DVL A+ H T + Q     
Sbjct: 167  TLEAGEEQQLVRVRWLAEQMRCAVVATGQVHMHRRERQPLQDVLTALRHHTTLEQAGHCL 226

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                        ++      P      V      +         L      +     +  
Sbjct: 227  FQNAERYLRPIPVIRRLFPEPW-----VRETVAIAEACSFEPGSLRYEYPPDLVPEHETP 281

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + L      G   R   G           +  +  EL +IA +++  YFL + D + +A
Sbjct: 282  TSFLARLTREGERRRYPSG------TPMKVQALIRKELELIAELRYEHYFLTIHDIVDFA 335

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  I    GRGS A S   Y L IT+++P    LLFERF++ DR   PD D+DF  +RR
Sbjct: 336  RRQGIL-CQGRGSAANSAVCYCLGITEVNPANVELLFERFISKDRDEPPDIDVDFEHERR 394

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  +YG ER A   T    + ++A+RDVG+AL    + V++L   I        
Sbjct: 395  EEVIQYIYQRYGRERAALAATVIRYRPRSAIRDVGKALGFDATLVEKLLDGIDWRDKTTG 454

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              Q I D    +    +    D+   +   L G  RH S H  G VI   PLS+LVP+  
Sbjct: 455  WRQQILD----KGLTRSPNVADQFFTLVNTLLGFPRHLSQHVGGFVISAGPLSELVPVEN 510

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDH 606
                   V Q++   +E  GL+K D L L  LT ++K+L  +  ++G    +  +P +D 
Sbjct: 511  AAMEGRTVIQWDKDDLESLGLMKVDVLALGMLTAIRKALALISEEKGTTFTIQDVPQEDP 570

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
            +TY +L    ++G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V+    R
Sbjct: 571  DTYAMLQKGDSIGVFQVESRAQINMLPRLKPETWYDLVIEVAIVRPGPIQGDMVHPYLRR 630

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KE 723
            K+G E +   +  +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM       
Sbjct: 631  KHGMEAVEYPNDAVRQVLERTLGVPIFQEQVIKLAMVAAGFSAGEADKLRRAMAAWKSHG 690

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            ++   +++ I G  + G     A  +++ +  F  YGF +SHAA++A++ Y +AW+K H+
Sbjct: 691  DLTPFRDKLIQGMLERGHDADFAERLYKQICGFGGYGFPESHAASFALLVYVSAWIKRHH 750

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAA 841
            P  F  A +  +        +  QDAR+ N+ ++PP VN       +      +   L  
Sbjct: 751  PAAFYCALLNSQPMGFYSPSQLVQDARRHNVTVLPPDVNHSQWQHTLQGPEQHLRLGLRI 810

Query: 842  IKGVGTTTARHIMEASADKP---FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            I+G+    A     A  ++P   + S  +  +R     LN+  +E L  A A+  F  +R
Sbjct: 811  IQGLPRNGAER---AHQNRPANGYQSAAELRTRA---GLNQSDMELLAGANAMPGFTSNR 864

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             Q    L   ++ A+            +FA+E  T                     +   
Sbjct: 865  HQAYWQLLEHEEPAE------------LFANEAMTEYTPEPCHLLPEPTEGQNVLADYSS 912

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             G     HPL + +           ++  AT  G  +++A +V  +Q+  T  G  + +V
Sbjct: 913  QGLTLQRHPLALLREQGHLRHCLTADQLKATRPGIPVQVAGLVTGRQRPGTASG--VTFV 970

Query: 1019 TFSEPAKEYEANFF 1032
            T  +         +
Sbjct: 971  TLEDETGNVNVVVW 984


>gi|16119907|ref|NP_396612.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58]
 gi|71151853|sp|Q8U642|DNE23_AGRT5 RecName: Full=Error-prone DNA polymerase 3
 gi|15163575|gb|AAK91053.1| DNA polymerase III, alpha chain [Agrobacterium tumefaciens str. C58]
          Length = 1087

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 261/1042 (25%), Positives = 444/1042 (42%), Gaps = 78/1042 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  LQV + +S L GA S   + +   A    A+ + D N+L   +   + + A G++ 
Sbjct: 2    SYAELQVTTHFSFLRGASSAQELFETAKALGIEALGVVDRNSLAGIVRALEASRATGLRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC+LD+                    S+++  +    Y RL  L++        K + 
Sbjct: 62   VIGCRLDLADGM----------------SVLVYPTDRAAYSRLTRLITLGKSRGG-KNNC 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
             +    +              + G I          +   +L    +LFGDR YV+L  R
Sbjct: 105  LLHWDDVVAY-----------TDGMIGILVPDLPDDLCGIQLRKMAELFGDRAYVSLCLR 153

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPR 247
             R  D+ R  ++  LA   ++  V TN+ LF      +  D++  +   T + +      
Sbjct: 154  RRQNDQLRLHEISNLATRFKVRTVVTNDVLFHEPGRRQLQDIVTCIRTRTTIDEVGFERE 213

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               D YLK   EM  +F    +AL  T+EI RRC+F L+      P        D Q   
Sbjct: 214  RHADRYLKPPEEMERLFPRYRQALARTMEIVRRCTFSLEELTYQYPEEAIVPGKDAQASL 273

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+         +  R  +G         D  + +  EL++I  MK++ YFL V   +++A
Sbjct: 274  EHY----VWQCVPDRYPEGL------PPDVLKVVRHELDLIRTMKYAPYFLTVFSIVRYA 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I    GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +RR
Sbjct: 324  RSQGIL-CQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERR 382

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+++   Y  E+ A   T    +A+ A+RDVG+AL +P   +  L   + +      
Sbjct: 383  EEVIQWIYRTYTREKAALCATVTRYRARGAIRDVGKALGLPEDVIKALSSGMWSW----- 437

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            S +    + R       D  +   L+++Q+L G  RH   H  G V+    L  LVP+  
Sbjct: 438  SEEVCDRNVRELNLNPDDRRLVLTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEP 497

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606
                D  + +++   +E    +K D L L  LT + K+ D + +   +  DLS I  +D 
Sbjct: 498  ATMKDRQIIEWDKDDVEALKFMKVDILALGMLTCMAKAFDLIREHKDRDLDLSKIEQEDS 557

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 558  VTYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPYLRR 617

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE- 723
            + GKE +    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M       
Sbjct: 618  REGKEAVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFTG 677

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             + + K++ +SG  +NG +   A   F  L  F  YGF +SHAA++A+I+Y ++++K HY
Sbjct: 678  GVSQFKDKLVSGMVRNGYAPEFAEKTFSQLEGFGSYGFPESHAASFALIAYASSYIKCHY 737

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRIYY 837
            P  F AA +  +        +   DAR   +++ P  +N    D  +        + +  
Sbjct: 738  PEAFCAALINSQPMGFYAPAQIVGDARAHGVEVRPVCINRSRWDCTLERIGNSDRHAVRL 797

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGY 896
                +KG+    A  ++ A  +  F S++D   R     +    L  L  A A       
Sbjct: 798  GFRQVKGLAVADAARVVAARMNNAFVSVDDMWRR---SGVPSEALVQLAKADAFLPSLKL 854

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-----AHEKGTFSDKITLEKFSVENSSVR 951
             R   L ++  ++                +F              +              
Sbjct: 855  ERRDALWAIKALRDE-----------PLPLFAAAAEREMAAIAEQQEPGVALRQMTDGHN 903

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +    G     HP+   +  L    I    E++ +  G  +  A +V+ +Q+  + K
Sbjct: 904  VIEDYSHTGLTLRQHPIAFLRKDLSVRNIITCAEAMNSRDGRWVYTAGLVLVRQKPGSAK 963

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G  + ++T  +         +P
Sbjct: 964  G--VMFITIEDETGPANLVVWP 983


>gi|153007424|ref|YP_001368639.1| error-prone DNA polymerase [Ochrobactrum anthropi ATCC 49188]
 gi|151559312|gb|ABS12810.1| DNA polymerase III, alpha subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 1077

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 247/1046 (23%), Positives = 430/1046 (41%), Gaps = 83/1046 (7%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC----AAGIQPII 71
              S++S L GA     ++ +        I I D N L   +            +  +  I
Sbjct: 9    AASNFSFLCGASHPQELVARAHELGLSGIGIADRNTLAGVVRAHAAWKDFRDKSDFRLFI 68

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+L                     P +V+       Y +L  L++        K    +
Sbjct: 69   GCRLSFTDG---------------TPDMVVYPRDRPAYGQLCRLLTEGKARAAIKGECHL 113

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHR 190
                L     +  I +              +    A  RL    +     +++ L   H+
Sbjct: 114  EWGDLLFRARQFQIAVFPPED---------DRPDFA-ARLTEIAQAAPGSVWLALAMPHQ 163

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VT 249
            G+D  R  ++ + A    +PL+ATN+ L+   +     DVL A  + T V    +     
Sbjct: 164  GHDGRRAERIARFAAEANVPLLATNDVLYHHPDRRALQDVLTATRYHTTVFAAGQLLEKN 223

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + +LK   EM+ +F D  EA+E T +     +F L       P           K  + 
Sbjct: 224  AERHLKPPKEMLRLFRDYAEAVEATADFVAPITFQLDELKYDYPDEPVPPG----KTPQQ 279

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L +    G        +I         +  +  EL +I +++++ YFL V D + +A++
Sbjct: 280  HLHDLTWEGAARHYGANSI-----PPKVQTLIHKELALIEKLQYAAYFLTVYDIVSYARR 334

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
             +I    GRGS A SV  + L +T +DP +  LLFERFL+ +R   PD D+DF  +RR+E
Sbjct: 335  EDIL-CQGRGSAANSVVCFCLGVTGVDPTQVDLLFERFLSVERKEPPDIDVDFEHERREE 393

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V++YV  +Y  +R A + T  S ++++A+RDVG+AL +       L   +       +  
Sbjct: 394  VMQYVYKRYSRDRAAIVATVISYRSRSAIRDVGKALGLTEDVTAALANTVWGISGGGIDK 453

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+    
Sbjct: 454  QHI----RQAGLDPDNPIIRRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIGPAA 509

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD------LSLIPF 603
              D    +++   I++ GL+K D L L  LT ++K+ D + Q   +        L+ +P 
Sbjct: 510  MEDRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPEKYDGKKLTLANLPR 569

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+  
Sbjct: 570  EDEAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPREFYDLVIEVAIVRPGPIQGDMVHPY 629

Query: 664  RKNGKEKIVSIHP----------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             +    +     P           +  +L +T+GV ++QEQ M+IA   + ++  EA+ L
Sbjct: 630  LRRRNNEEPCTLPSPAPEYGPPDELLQILGKTKGVPLFQEQAMRIAMEAAKFTPDEANQL 689

Query: 714  RRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM    K   +   + + I G    G  +T A N F  +  F +YGF +SHAA++A +
Sbjct: 690  RRAMATFRKMGTIHTMETKMIEGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASFAHL 749

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  + D
Sbjct: 750  VYISAWIKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSHWDNMLED 809

Query: 833  -----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +      I G        ++    + P+ ++ED   R+   +L+RR    L  
Sbjct: 810  TLDIRPALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRL---RLDRRAFTLLAD 865

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            A A       R   L ++  +            ++   +F     +   +    K     
Sbjct: 866  ADAFGSLDIDRRAALWAVRRL----------PNDETLPLFRAAATSELAEEPRTKLPEMA 915

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +S     +         GHPL   +  L   G+           G  +++A +V  +Q+ 
Sbjct: 916  ASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVRQRP 975

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + KG  + ++T  +         +P
Sbjct: 976  GSAKG--VVFLTIEDETGIANIVVWP 999


>gi|302550406|ref|ZP_07302748.1| DNA polymerase subunit III [Streptomyces viridochromogenes DSM 40736]
 gi|302468024|gb|EFL31117.1| DNA polymerase subunit III [Streptomyces viridochromogenes DSM 40736]
          Length = 1173

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 262/1051 (24%), Positives = 448/1051 (42%), Gaps = 55/1051 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL   S +SL  GA     + ++ +     A+A+TD + L  A+ F++    AG++
Sbjct: 2    PGFTHLHTVSGFSLRYGASHPERLAERASGRGMDALALTDRDTLAGAVRFAKACAKAGVR 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFP---------TVPSIVLLVST-AEGYQRLIELVSR 118
            P+ G  L +   +  +   + +   P         + P +  L      G+  L  LVS 
Sbjct: 62   PVFGADLAVAGVEPPEPGPRSRRRTPVRGGAFVDESAPRVTFLARDGGRGWGELCRLVSA 121

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             +  +    +  +          EGL +L G     + RA        A + L+ +++++
Sbjct: 122  AHEAE---GAPLLPW---GRNHAEGLTVLLG-PDSEVGRALAAGRPDRAARLLVPWREVY 174

Query: 179  GDRLYVNLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            GD L +    H             ++ V  A    +  V +N   +         DVL A
Sbjct: 175  GDALRLEAVWHGRKGTGPGSLRLAARTVGFAAEQRIRPVLSNAVRYADPGLGPVADVLDA 234

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
                  V                 +        +  A        R         A  L 
Sbjct: 235  ARRLVPVDPAKELDSGEAWLKGAEAMFAVAERIVEAAGFRRDTAHRLVEQTEAAAAECLV 294

Query: 294  RFIEKECDDIQKEEENEL-----RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
               +          E  L     R          +A   +      ++Y +R+  EL++I
Sbjct: 295  DPEDDLGIGTVHFPEPHLVGAGRRTAQRTLASRAVAGMVLRGYDRRREYWERMHHELDII 354

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
            A   F+ YFL VA  +   ++  + V   RGSGAGS+  + L I   DP+   LL ERFL
Sbjct: 355  AHHGFASYFLTVAQVVDDVREMGVRVA-ARGSGAGSLVNHLLGIAHADPVEHRLLMERFL 413

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            + +R+ +PD DID    RR EV R + +++G ERVA +    + + + A+RDVG AL M 
Sbjct: 414  SKERVVLPDIDIDVESARRLEVYRAIIDRFGTERVATVAMPETYRVRHAIRDVGAALSMD 473

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
             +++DR+ K  P+  A      A+ +    R          +L E+ + L+ L R  + H
Sbjct: 474  PAEIDRVAKSFPHIRARDA-RAALEELPELRALAGEKEKYGKLWELVEALDALPRGVAMH 532

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
              G+++ D  L    P+        P++QF+   +E  GL+K D LG++  + +  +++ 
Sbjct: 533  PCGVLLSDASLLARTPVMPTSGEGFPMSQFDKDDVEDLGLLKLDVLGVRMQSAMAHAVEE 592

Query: 589  LAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            + +  GV+VDL  +   D ETY L+ +  TLG FQ+ES G R  +  +QP    D++  +
Sbjct: 593  VRRVSGVRVDLDALAPGDPETYRLVQSTETLGCFQIESPGQRDLVGRLQPATFHDLVVDI 652

Query: 648  SLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            SL+RPGP+   +   +   ++G+  I   HP ++  L++T GV+++ EQ++ I  +++G 
Sbjct: 653  SLFRPGPVAADMVRPFIEARHGRAPIRYPHPDLEEPLRDTYGVVVFHEQIIDIVDIMTGC 712

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
               EAD +RR +     E   + K  F   A+  G         +E++  F  YGF K+H
Sbjct: 713  GRGEADRVRRGLSD--PESQARIKVWFAQHAAARGYDAETIQRTWEIVEAFGSYGFCKAH 770

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A A+AV +YQ+AW+K H+P  F A  +T +     K +    DAR+  + ++P  VN   
Sbjct: 771  AVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARRRGVPVLPLDVNKSG 829

Query: 826  VDFKVG----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
            V  ++        +  +L+ + G+    A  I E    +P+DSL DF  R    + +R +
Sbjct: 830  VAHRIELVSGTWGLRLALSDVHGISEAEAARIAE---GQPYDSLVDFWER---GRPSRPL 883

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
             + L   GALD FG +R  L   L  + + A+            +    +   +      
Sbjct: 884  AQRLAQVGALDAFGANRRDLQLHLTELHRGARGG----GGGQLPLAGGRRTAPAG----- 934

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                  SS R   E  VL    S + +D ++  L ++G+           G  + +A   
Sbjct: 935  -LPDLTSSERLSAELGVLSMDASRNLMDDHRAFLDELGVVSARRLREARHGETVLVAGAK 993

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + Q    R G R+ + T  +     +  FF
Sbjct: 994  AATQTPPIRSGKRVIFSTLDDGTGLVDLAFF 1024


>gi|326803733|ref|YP_004321551.1| DNA polymerase III, alpha subunit [Aerococcus urinae
            ACS-120-V-Col10a]
 gi|326651141|gb|AEA01324.1| DNA polymerase III, alpha subunit [Aerococcus urinae
            ACS-120-V-Col10a]
          Length = 1124

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 307/1030 (29%), Positives = 510/1030 (49%), Gaps = 42/1030 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L V++SY+LL+  + + + ++   A     +AI+D N ++  ++F        I P+
Sbjct: 2    FTPLNVNTSYTLLKSPMPVKDYVEAAKALDYQNLAISDVNVMYGVIDFYNYCKHYDINPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  + I   D                  ++     +GY+ L+ L S +   +       
Sbjct: 62   IGMTVSIQRPDQRDQEEW-----------LIYAKNDQGYRSLMRLSSLIKSQEPIDYQAV 110

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
                ++        I +   ++GP          + A   L   +++F    LY+ +   
Sbjct: 111  --RDFIFNNHR-NWITIIEANNGPHMHFLKQQREEEAAAFLDKLREIFKASDLYMGV--- 164

Query: 190  RGYDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
               D    Y ++ +  LA   ++PL+A +   +LS+ D    DVL A+  +  +    R 
Sbjct: 165  ---DESYLYHQAALEDLAKESQIPLIAQSKLAYLSKNDVFTQDVLAAIEVNQPLD-NYRE 220

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            +   +     RS      S   + L    +        + +        + K   +  + 
Sbjct: 221  KAGAEGQFFLRSLASYQESYQNKGLAKAFDQVSEAFDGVHLDIQFDQALLPKYPIESGQS 280

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L++ A  GL  R+           Q YR+RLD+EL++I +M F+ YFLIV D + +
Sbjct: 281  SKEFLKDLAYQGLSKRVGN--------EQSYRERLDYELSIIDQMGFNDYFLIVWDVMDY 332

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A K +I  GPGRGS AGS+ AY L ITD+DP+R  LLFERFLNP+R SMPD D+DF  D+
Sbjct: 333  AHKKHIMTGPGRGSAAGSLVAYCLFITDVDPIRNHLLFERFLNPERQSMPDIDLDFPDDK 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R +++ YV +KYG + VAQI TFG+  A+ A+RDVG A     + + R    I +   + 
Sbjct: 393  RQDILNYVYHKYGSDHVAQISTFGTFAARKAIRDVGNAFNKSQATMSRWANTISSQ--NQ 450

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               +A    S+ ++    +       + ++K+EGL RH STHAAG+++ D+ L+  +P+ 
Sbjct: 451  TLEEAYQSSSQLQQYIAEEEDGQLWFQTAKKIEGLPRHVSTHAAGVILSDQDLTDFIPLQ 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
              +   +  +Q+ M  IE+ GL+K DFL L  LT+L  S+    +    ++     P +D
Sbjct: 511  AALNHSIHQSQYTMHEIERIGLLKIDFLSLSNLTILANSVRAAEKISKSRLRPIDFPRND 570

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
               Y + +   TLG+FQ ES+G+R+ L  ++P  + D+ A+ +LYRPGP+  I  + NRK
Sbjct: 571  QSVYRVFSQANTLGVFQFESNGIRRVLRRVKPSSMADLAAVNALYRPGPMQQINHFVNRK 630

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKE I   HP ++ +LKET G+I+YQEQVMQ+AQ ++G+SL EAD+LRR + KK K  M
Sbjct: 631  HGKEPITYPHPDLEGILKETYGIIVYQEQVMQVAQKIAGFSLGEADILRRTISKKDKATM 690

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+ + +FI  A   G S+++A  I+  +  FADYGFNKSHA AY+ ++Y+ AW+K HYP 
Sbjct: 691  DRLQAKFIRQAVAKGYSQSVAPKIYSYIEAFADYGFNKSHAYAYSYLAYEMAWLKVHYPA 750

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKG 844
             F   ++        K ++   +A    +++  P VN      +V D++ I   LA I+G
Sbjct: 751  AFYYGNLLQHKIYETKGQQLTYEASLCQVKLQLPDVNRSYTTMQVVDDQHILLGLADIRG 810

Query: 845  VGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +       I++   +   + SL DF  R+         LE L  AGALD FGY+R  L++
Sbjct: 811  LMRNFTTAIVQERLNGGQYRSLGDFIQRLPKNYSKADNLEKLALAGALDSFGYNRRTLIE 870

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
                    A  +     N+  ++F +++        ++  +  +  +  E EQ  LG   
Sbjct: 871  EALPKLLEAVNLFGGSNNQQLSLF-NQENRELYAPEIKHLNEYDDRLLLEGEQETLGQSI 929

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            S      Y+P  +   I+   +       + + +   +V  ++ +T+K   + ++T  + 
Sbjct: 930  SVELYSDYRPYYQNGQIQPINKLS---DKSQVTIIGEIVKVKRIQTKKNQPMAFLTLRDE 986

Query: 1024 AKEYEANFFP 1033
              E E   FP
Sbjct: 987  HSEVEVIAFP 996


>gi|221067247|ref|ZP_03543352.1| DNA polymerase III, alpha subunit [Comamonas testosteroni KF-1]
 gi|220712270|gb|EED67638.1| DNA polymerase III, alpha subunit [Comamonas testosteroni KF-1]
          Length = 1136

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 264/1080 (24%), Positives = 431/1080 (39%), Gaps = 104/1080 (9%)

Query: 3    QYLEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            Q + + P ++  L   S +S L GA S   ++ +  +    A+A+TD  ++  A+   + 
Sbjct: 31   QGMGRGPLAYAELHSLSHFSFLRGASSPAELVHRAKSLGYAALALTDECSVAGAVRAFEA 90

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A   G+  I G +                        IV+LV    G+  L E ++    
Sbjct: 91   ARDCGLHLIHGSEF-----------------AWGPLRIVVLVRDLLGWGNLCEFITTARS 133

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                K    +  S   ++  +G   L     G +D +     +   E           + 
Sbjct: 134  RAA-KGEYLVDESSPWQLLNQGCECLLLPQRGKLDASDLIAVTACLESASGYLDA---EN 189

Query: 182  LYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            L++ ++ H   D       + Q      L L+A  +    +       DV+ A+     V
Sbjct: 190  LWLGVELHLAPDDSLWLQTLQQAGAALGLRLLACGDVHMHARSRKPLQDVVTAIRLGRTV 249

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              +    + P+     RS +          LE T+E+A RCSF L       P+      
Sbjct: 250  -AECGFALQPNAERHLRSRLRLASLYPRAMLEVTLELAGRCSFSLDEIRYHYPKESVLAG 308

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +     L      G   R  QG           R +L  EL +I   K+  YFL V
Sbjct: 309  MTATQT----LAWLTWEGAAGRYPQG------IPGKVRDQLHKELALIEDKKYEMYFLTV 358

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +++A+   I    GRGS A S   Y L IT ++P   +LLFERF++ +R   PD D+
Sbjct: 359  HDIVRYARSVGIL-CQGRGSAANSAVCYCLGITAVNPHGGNLLFERFISKERGEPPDIDV 417

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR+EVI+Y+  KYG +R A        ++++ALRDVG+AL +P   +D L K   
Sbjct: 418  DFEHARREEVIQYIYGKYGRDRAALTAVVSCWRSRSALRDVGKALGLPADLIDALAKGQY 477

Query: 481  NDPAH----PVSLQAIADDSRFREARLADPSVDR-------------------------L 511
                H      +    AD +   +   A P                              
Sbjct: 478  WFSEHAQAQAQTHAETADAAEEGQVPEALPEDWVQRKLQEAEVLACEMHCAVGAHRLRLW 537

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
            +E++ +L+   RH S H  G V+ +  L++LVP+     +   V Q++   ++  GL+K 
Sbjct: 538  IELAWQLKDSPRHLSQHVGGFVLTEGKLTRLVPVEPATMARRSVIQWDKDDLDVVGLLKV 597

Query: 572  DFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            D L L  LT+L+ +L+     RG   +L  IP +D  TY ++    T+G FQ+ES     
Sbjct: 598  DVLALGMLTMLRNALNERARWRGESWELHQIPQEDAATYEMICQADTVGTFQIESRAQMS 657

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-----NRKNGKEKIVSIHPLIDPMLKET 685
             L  +QP    D++  V++ RPGPI   +V+       R   K  +    P ++  LK T
Sbjct: 658  MLPRLQPRTFYDLVVEVAIVRPGPIQGGMVHPYLLARERARRKLPLKLEKPELENALKRT 717

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKT 744
             GV I+QEQVMQIA   + +S  +AD LRR+M     K  + K +   I G    G    
Sbjct: 718  LGVPIFQEQVMQIAIDAAKFSAGKADELRRSMAAWKRKGGVHKFERPLIDGMVARGYKLE 777

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
             A  IF  +  F +YGF +SHA ++A+++Y +AW+K H P  FL A +  +        +
Sbjct: 778  FAQAIFAQMLGFGEYGFPESHAYSFALLAYASAWLKRHEPAIFLQALLNAQPMGFYSPSQ 837

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVG------------DNRIYYSLAAIKGVGTTTARH 852
              QDAR+  ++++P  V        +                +   L  +  +G   A  
Sbjct: 838  LVQDARRHGVRVLPVDVCHSHWHCTLEAPVQAIRGVAQPQPAVRLGLNRVARLGKAAALR 897

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            I   +A  P+  + D   R    +L++  +E+L  A AL      R Q +          
Sbjct: 898  IEGEAAQAPWKDVSDLAIRA---RLDKADMEALAAADALRSLAGHRRQQMWD-------- 946

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
                        ++          +  LE             +    G     HPL + +
Sbjct: 947  -------AAAQVSLPPIFAQAAIHEPRLE-LPQAAEGEEIMFDYAATGLSLRRHPLALLR 998

Query: 973  PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            P L + G+K   E    + G  +R   +V  +Q+  T  G+   ++T  +         +
Sbjct: 999  PRLARHGLKTAAELRQMLPGQKVRACGIVTVRQRPPTANGTL--FITLEDETGVINLVVW 1056


>gi|227889857|ref|ZP_04007662.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
 gi|227849721|gb|EEJ59807.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
          Length = 1038

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 317/1025 (30%), Positives = 512/1025 (49%), Gaps = 39/1025 (3%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V LQ  SS++LLE    + N+ +        AIA+TD N  +  ++F + A   GI+P++
Sbjct: 4    VSLQNLSSFTLLESPTKVKNLAENAKKKGYSAIALTDINITYGLVDFYKAAKDTGIKPLL 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVR 130
            G QL I+          G         ++++    +GY+ ++ L S + L  + G++   
Sbjct: 64   GMQLRIN----------GLIDEANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENV 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR--LYVNLQR 188
            +    L++     +++        + +    N+ ++    L   +        +Y+ +  
Sbjct: 114  LTFEDLKKYLGHLILITPSNLHSEL-KMLQTNNPKMGANYLRKLQDSLPSSSSMYLGVYA 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              G   Y    +  LA    LPL A  +  +L+  +      L A+  +T +   ++   
Sbjct: 173  DSGQQEYIN-YISSLATQFSLPLTAVEDGQYLNRNEQFLRRTLQAIKTNTHLENIEQLAK 231

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                +    SE +   S     +E+ +E A +   I           + K   +     +
Sbjct: 232  QAGSHYLKNSEELQ-VSYRKFDIEDALENAEKIGKICTAEIKFQDPQLPKFKQNKFPTSK 290

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L   A  GL  R              Y++RLD+EL VI  M F  YFLIV D + +A 
Sbjct: 291  EYLHALAQEGLAKRF------NNQIPAQYQKRLDYELQVINEMGFDDYFLIVWDVMNFAH 344

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              +I  GPGRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R  MPD D+D   +RRD
Sbjct: 345  SVHITTGPGRGSAAGSLVSYALRITEVDPIEYNLLFERFLNPARQQMPDIDLDIPDNRRD 404

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+I+Y+  KYG    AQI+TFG+L AK  L+DV R   +   +  R    IP+       
Sbjct: 405  EIIKYMFEKYGMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAIPHSKGKITL 464

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A       +     +     L   ++ LE L RH S HAAG+VI D  L+++V +   
Sbjct: 465  AEAYQKSKELQLLVNTNELSKILFATAEHLENLPRHYSIHAAGLVITDDSLAEIVGLQ-A 523

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
                +PVTQ     +E  GL+K DFLGL+ LT+L   +  L   G+ +D + IP DD ET
Sbjct: 524  GPLGIPVTQQTKFNVESLGLLKIDFLGLRNLTILGNIVAALRADGIDIDPNQIPLDDQET 583

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T  +FQ ES G+++ LE + PD  EDI+A+ +LYRPGPI+NI  + NRK+GK
Sbjct: 584  LALFQRGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPINNIDHFINRKHGK 643

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E++    P +  +L  T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK  E + ++
Sbjct: 644  ERVQYPDPSLKKILGTTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSKKNAEVIQRE 703

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            + +FI GA K G  K  A  +++ +A+FA+YGFN+SHA AY+ I++  A+ K HYP  F 
Sbjct: 704  RAKFIEGAIKLGRKKETAEKVYDYIAQFANYGFNRSHAVAYSKIAFWLAYFKVHYPGAFY 763

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             A +   M N  KI ++   A++  I+I+PP +     DF + + +I   L AI+G+ + 
Sbjct: 764  LALLNSNMGNRNKIAQYLMQAQEAGIKILPPDIENSKADFSLENGKILVGLKAIRGLRSD 823

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
              + I+E    +P  S+ DF  ++D+  L+   +E+L+ AG  D    +R +LL+   ++
Sbjct: 824  LLKQILEI--KRPIKSMTDFLWKIDNNLLSAGAVENLIKAGTFDRLAPNRNELLKINKDL 881

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +  +    N      ++F     T   K+  EK     ++ +   E   +GF    +P+
Sbjct: 882  VESVKMAGSN-----LSLF----ETLEPKVEEEKMP--TAAEKSAMEVEAMGFSTGINPI 930

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
               +   RK   K  +   +  +G  +     ++  +   T+KG  + +  FS+ + E +
Sbjct: 931  IAVQKYARKFNAKRLQVFESNEQGIAV---GKLMKVKPITTKKGDNMAFAVFSDTSGERD 987

Query: 1029 ANFFP 1033
               FP
Sbjct: 988  FTIFP 992


>gi|256060212|ref|ZP_05450388.1| error-prone DNA polymerase [Brucella neotomae 5K33]
 gi|261324186|ref|ZP_05963383.1| error-prone DNA polymerase [Brucella neotomae 5K33]
 gi|261300166|gb|EEY03663.1| error-prone DNA polymerase [Brucella neotomae 5K33]
          Length = 1077

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 252/1046 (24%), Positives = 435/1046 (41%), Gaps = 83/1046 (7%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPII 71
              S++S L GA     ++++  A     I I D N L   +    +       +G +  I
Sbjct: 9    AASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQWKDIRKESGFRLFI 68

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+L                     P +V+       Y +L  L++        K    +
Sbjct: 69   GCRLSFIDG---------------TPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGECHL 113

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHR 190
              + L     +  I +        D A           RL    +     +++ L   H+
Sbjct: 114  EWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLELTMPHQ 163

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VT 249
            G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R     
Sbjct: 164  GQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLEKN 223

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + +LK   EMV +F D PEA+  T +     +F L       P           K  + 
Sbjct: 224  AERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KTAQQ 279

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L +    G         I         +  ++ EL +IAR+++  YFL V D +  A++
Sbjct: 280  HLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTHARE 334

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +RR+E
Sbjct: 335  KGIL-CQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHERREE 393

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   + +     +  
Sbjct: 394  VMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWSLSGGGIDR 453

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+    
Sbjct: 454  QHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIGPAA 509

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD------LSLIPF 603
                   +++   I++ GL+K D L L  LT ++K+ D + Q   ++       L+ +P 
Sbjct: 510  MDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLASLPR 569

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+  
Sbjct: 570  EDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMVHPY 629

Query: 664  RKNGKEKIVSIHP----------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             +    +     P           +  +L +T+GV ++QEQ M+IA   + ++  EA+ L
Sbjct: 630  LRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEANQL 689

Query: 714  RRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM    K   +   +++ I G    G  +T A N F  +  F +YGF +SHAA++A +
Sbjct: 690  RRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASFAHL 749

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  + +
Sbjct: 750  VYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNILEE 809

Query: 833  N-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +      I G        ++    + P+ ++ED   R+   +L+RR    L  
Sbjct: 810  TPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRL---RLDRRAFTLLAD 865

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            A A       R   L ++  +            ++   +F     +   +    K     
Sbjct: 866  ADAFGSLDIDRRAALWAVRRL----------PNDETLPLFRAAAASELAQEPRTKLPEMA 915

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +S     +         GHPL   +  L   G+           G  +++A +V  +Q+ 
Sbjct: 916  ASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVRQRP 975

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + KG  + ++T  +         +P
Sbjct: 976  GSAKG--VVFLTIEDETGIANIVIWP 999


>gi|289755502|ref|ZP_06514880.1| DNA polymerase III, alpha subunit [Mycobacterium tuberculosis
           EAS054]
 gi|289696089|gb|EFD63518.1| DNA polymerase III, alpha subunit [Mycobacterium tuberculosis
           EAS054]
          Length = 1005

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 274/977 (28%), Positives = 462/977 (47%), Gaps = 60/977 (6%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 54  SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 113

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ + G +L +        T + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 114 VRTVFGAELSL------GATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 167

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
              R     L E       +LTG   G + +A        A++ L      F   R+ + 
Sbjct: 168 GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 227

Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           L  H    D  R + +  LA    + +VAT  + F           + A+     +    
Sbjct: 228 LTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAA 287

Query: 245 RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                    +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +    
Sbjct: 288 GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPDG--- 344

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              E++ LR+  +AG   R      A   ++Q     ++ EL VIA+++F GYFL+V D 
Sbjct: 345 -HTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 398

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            ++ + N+I    GRGS A S   YAL +T +DP+   LLFERFL+P R   PD DID  
Sbjct: 399 TRFCRDNDIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 457

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K + +  
Sbjct: 458 SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSHWT 517

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                +  I +               ++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 518 GQADDVDGIPE---------------QVIDLATQIRNLPRHLGIHSGGMVICDRPIADVC 562

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
           P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+   ++VDL+ + 
Sbjct: 563 PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 622

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660
             +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  
Sbjct: 623 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 682

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
           Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAM  K
Sbjct: 683 YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 742

Query: 720 KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           +  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A + + +AW
Sbjct: 743 RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 802

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836
            K H+P  F AA +  +       +    DAR+  + +  P VN              + 
Sbjct: 803 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 862

Query: 837 YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             L A++ +G   A  ++    A+ PF SL D  SRV   +L+   +E+L  AGAL CFG
Sbjct: 863 LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 919

Query: 896 YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
            SR +                   T + + +      +      +      +       +
Sbjct: 920 MSRRE----------ALWAAGAAATGRPDRLPGVGSSS-----HIPALPGMSELELAAAD 964

Query: 956 QRVLGFYFSGHPLDVYK 972
               G     +P    +
Sbjct: 965 VWATGVSPDSYPTQFLR 981


>gi|116515088|ref|YP_802717.1| DNA polymerase III, a subunit [Buchnera aphidicola str. Cc (Cinara
            cedri)]
 gi|116256942|gb|ABJ90624.1| DNA polymerase III, a subunit [Buchnera aphidicola str. Cc (Cinara
            cedri)]
          Length = 1172

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 378/1053 (35%), Positives = 586/1053 (55%), Gaps = 48/1053 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVH+++HS YS+++G +    +++         + ITD +NL   ++F   AC  GI+P
Sbjct: 5    DFVHIRIHSDYSMIDGIIKPKKLVEYAKLMNMKVLGITDISNLHGVIKFYSSACKLGIKP 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-S 128
            IIG  + +            K       ++ LL     GY  +I+L+S  Y         
Sbjct: 65   IIGVDIIVS----------SKFEQNVFSNLTLLARNNIGYNNIIKLLSESYQSGYDNNIG 114

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            + I +  L +   +GL++L+GG  G I +  F N  ++  K LL +KK F ++ Y+ + R
Sbjct: 115  LVIKIDDLLKY-RKGLLVLSGGIKGNIGKCIFNNKKKLLYKYLLFYKKYFLNKFYLEISR 173

Query: 189  HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV-VSQKDRP 246
                 +      +  ++Y   LP+VATN  LFL ++D++ H + +A+             
Sbjct: 174  LGYEKEEEYIIYIKYISYKFSLPIVATNEVLFLKKKDFQVHKIKVAIYKKKTISDSNFVY 233

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            + T + +L+   EM+ IF D PEA+ N+ EI++RC+ I+         +           
Sbjct: 234  KYTENQFLRKNDEMIKIFHDCPEAIINSFEISKRCNVIIP-----SGSYFLPLFPTGSIN 288

Query: 307  EENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              +    K+  GL+ R   +      +      Y  RL++EL +I +M F  YFLIV +F
Sbjct: 289  LYDFFVKKSKEGLKKRLKTIYLNKNKREKKKDIYFSRLEYELLIIKKMGFISYFLIVMEF 348

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQWAKKNNIPVGPGRGSG+GS+ ++AL IT+IDPL+F+LLFERFLNP+R+S+PDFDIDFC
Sbjct: 349  IQWAKKNNIPVGPGRGSGSGSLVSFALNITEIDPLKFNLLFERFLNPNRISLPDFDIDFC 408

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             ++RD VI +V  KYG   VAQIITFG++ AKA +RDVGR L  PY  ++++ KLIP D 
Sbjct: 409  MNKRDLVIDHVSKKYGRNSVAQIITFGTMAAKAVVRDVGRVLGYPYGLINKISKLIPLDS 468

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  +A +      +    +  + +L+ IS+KLEG+ ++   HA G+VI    +S  +
Sbjct: 469  NMNLK-KAFSIKKELIDLYHHNNDIKKLINISKKLEGVIKNIGKHAGGVVISPTKISDFI 527

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK---SLDFLAQRGVKVDLSL 600
            P+  D   +  VTQF+   +E  GL+KFDFLGLKTLT++      ++   +   K  L+ 
Sbjct: 528  PIICDHLGNNQVTQFDKNDVEFVGLVKFDFLGLKTLTMIDMIIKRINKKDKIKKKFFLNK 587

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            I   + +++ LL    T  +FQLES GMR  ++ ++PD  EDI++LV+LYRPGP+ + +V
Sbjct: 588  ISLKNKKSFLLLKKSETTSVFQLESIGMRNLIKRLKPDSFEDIVSLVALYRPGPLQSGMV 647

Query: 661  --YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              + NRK+GKEKI        H  + P+LK T G+I+YQEQVMQIAQ+LS ++ SEAD+L
Sbjct: 648  DNFINRKHGKEKISYPDSKWQHKWLKPILKSTYGIILYQEQVMQIAQILSNFTPSEADIL 707

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRAM KK  +EM +QK+ F SGA +N I   ++  IF LL KF+ YGFNKSH+  YA+++
Sbjct: 708  RRAMAKKNPKEMMRQKKLFQSGAKENLIDVNLSKKIFYLLEKFSSYGFNKSHSVTYALLA 767

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD- 832
            YQT W+K +YP EF+ ++MTL+M N  KI     DAR+  ++I+PP+VN     F +   
Sbjct: 768  YQTLWLKANYPSEFMVSAMTLDMTNTNKIVNLIYDARRMKLKIIPPNVNISNYSFSINKY 827

Query: 833  NRIYYSLAAIKGVGTTTARHIMEAS--ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
              I Y L AIKG+G ++   I+E     +  F S  DFC  +  KK+ R V E L+ +GA
Sbjct: 828  GDIIYGLGAIKGLGKSSIDIIIEERKKKNNAFFSFLDFCVCLLLKKITRHVFEILIMSGA 887

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS-- 948
             DCF   R++L   ++ + K A+    N   +  N+  +    F  KI+++ +  E +  
Sbjct: 888  CDCFNICRVELFNKIEYLLKLAKQKISNIQLQQNNL-FNFNNDFFQKISIKNYKKEKNFY 946

Query: 949  --------SVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLAA 999
                      + + E+ +LG Y S HP+  +   +          + +   +  N+ L+ 
Sbjct: 947  NFELYNIFLKKLQWEKEILGLYLSNHPIKNFLNEINYYTKGMKLNDYLLDNKKKNVILSG 1006

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            M+ S +   T+K  +   +T  +     +  +F
Sbjct: 1007 MIFSIKTMFTKKKKKFYIITLDDSYSRLDVLYF 1039


>gi|56964489|ref|YP_176220.1| DNA polymerase III alpha subunit DnaE [Bacillus clausii KSM-K16]
 gi|56910732|dbj|BAD65259.1| DNA polymerase III alpha subunit DnaE [Bacillus clausii KSM-K16]
          Length = 1095

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 331/1023 (32%), Positives = 526/1023 (51%), Gaps = 64/1023 (6%)

Query: 15   QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             V+S YSLL+    ++ ++         A+++TD + L+ A+ F Q    AG++P++G +
Sbjct: 7    NVYSEYSLLQSTNRVDELVQAAKEAGYTALSLTDRHVLYGAVPFFQSCRKAGLKPLLGLE 66

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            + + + + +                       EGY++L+      +    G Q+ +  + 
Sbjct: 67   VTVRLDEEIIPVRMV-------------AKNEEGYRQLV-----AHSTSLGFQTKQAAIE 108

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE-KRLLTFKKLFGD-RLYVNLQRHRGY 192
                         T              +   A+   L  +++L G    ++ L      
Sbjct: 109  LETWKAN-----STAC-----FVFIPKEAFVAAKGNWLHFWERLAGGLEAFIEL-AGGES 157

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
            D     +++Q A  H++P VA   + FL +ED   + ++ A+   T  +  +        
Sbjct: 158  D----HELIQFANAHQIPCVAAPPTRFLRKEDAPVYQLVRAIGAGTTTTHLELEEGWQRW 213

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE-EENEL 311
            +L   + +   F +   AL     +A +    L        +      D +  E  +  L
Sbjct: 214  HLPTANSLKERFPEK--ALLQARALAEKVEPYLPE-----EKPRIPAYDGLTVEQADKRL 266

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                  GL+             + +  +RL+ EL +IA   +S YFLIVADF+ +AKK+ 
Sbjct: 267  ETLCQQGLK-------ARYKAVSVEAERRLEHELAIIAERGYSSYFLIVADFVGYAKKSG 319

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I  GPGRGS A S+ AY L ITD+DPL   LLFERFLNP+R S+PD D+DF   RRDEVI
Sbjct: 320  ILTGPGRGSSASSIVAYTLFITDVDPLAHDLLFERFLNPERASLPDIDVDFPDYRRDEVI 379

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             YV+ ++GH+RVAQ++TFG+  A+AA+RDVG+AL + ++ VDR+ K +      P SL  
Sbjct: 380  AYVRERFGHDRVAQVLTFGTFAARAAIRDVGKALSIRHTFVDRVAKSL-----IPASLSL 434

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                 +     L  P +D LL  ++++EGL RHASTHAAG++I D+PL+    +      
Sbjct: 435  NEAQEKGVFKGLESPELDELLFFAKQIEGLPRHASTHAAGVIISDKPLNNKTALQLG-ID 493

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
               VTQ +M  + + GL+KFDFLGL+ LTLL++ L  + Q      +L  IP +D  T+ 
Sbjct: 494  GHAVTQADMDSLARLGLVKFDFLGLRNLTLLERMLKVIEQEEGVALNLQHIPLNDKATFQ 553

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL    + GIFQLES+GMRQ L+ +QP   EDI+A  +LYRPGP+  I  Y   K+G  +
Sbjct: 554  LLQQGKSTGIFQLESAGMRQVLKQLQPSQFEDIVATSALYRPGPMAFIPEYIRGKHGHTQ 613

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +  H  + P+++ T GV++YQEQ+MQ+ Q  + YSL+EAD+ RRA+ KK  + + +++ 
Sbjct: 614  AIVPHESLRPIVEPTFGVLVYQEQIMQVVQATANYSLAEADLFRRAISKKQHDVIIQERH 673

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            +FI  A +NG     A  IF L+ +FA+YGF KSHA AY+ ISY  A+++ H+P  F AA
Sbjct: 674  QFIHRAVENGFLPEEAEAIFSLIERFANYGFPKSHATAYSFISYWLAYLRVHFPAAFFAA 733

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
              +    N EK+  +  +A++  I+++PPSV    + F++ + +I + L  I GV     
Sbjct: 734  LFSSVWQNHEKLYSYINEAKKEGIRVLPPSVCKSGLLFELENGQIRFGLLPISGVNVQAV 793

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+         +L  F + V S  +N+RV+E+L+ AGALD FG SR  LL +LD  + 
Sbjct: 794  NEIISKRRKNSDSNLFMFYAHVASTAVNKRVMEALIKAGALDEFGQSRATLLGNLDKAEA 853

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + V   + +    +F  +             +        E E+ VLGFY SGHP++ 
Sbjct: 854  FVEQVRSFKASS-GGLFTIKPAV----PAYLDVTPSTKMEDLEGEREVLGFYLSGHPIEN 908

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                L   G     E + +     +R+A MV+  ++  T+KG  + ++T S+ + E    
Sbjct: 909  ELERLAPFGRIPLAECIPSR--KPVRIAGMVIDVKKIVTKKGEAMAFLTLSDESGECSCV 966

Query: 1031 FFP 1033
             FP
Sbjct: 967  AFP 969


>gi|254465509|ref|ZP_05078920.1| DNA polymerase III, alpha subunit subfamily, putative
            [Rhodobacterales bacterium Y4I]
 gi|206686417|gb|EDZ46899.1| DNA polymerase III, alpha subunit subfamily, putative
            [Rhodobacterales bacterium Y4I]
          Length = 1127

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 258/1067 (24%), Positives = 433/1067 (40%), Gaps = 85/1067 (7%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            LT  +++   +  L V ++++ L GA     ++ + A     AIAITD N+L   +    
Sbjct: 19   LTTRMQRQ-DYAELCVTTNFTFLTGASHPEELVVRAAELGLSAIAITDYNSLAGVVRAWS 77

Query: 61   KACAA------GIQPIIGCQLDIDMQDNLKMTNQGKTPFPT---------VPSIVL---- 101
                       G+Q  I  Q  +D     ++ +  +   P             +V+    
Sbjct: 78   ALKQLKRETQDGVQ--IRSQYRLDSSSRQEIGHSHRIAKPDSVMLPKLIVGCRLVVQDSS 135

Query: 102  -----LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
                 L      Y+RL  L++         Q +      L       LI L         
Sbjct: 136  VDWITLPRDRAAYKRLTRLLTLGKRRADKGQCILYAKDMLPVCKGMTLIALP-------- 187

Query: 157  RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATN 215
                      +   +   ++ F   +++    R+ G D+   S   ++A+    P+VA  
Sbjct: 188  ----RGRLDESVPDIQALRRHFPGHVFLGAAPRYDGSDQAYLSACAEIAHRTSAPMVAVG 243

Query: 216  NSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENT 274
            + L       +  DVL  +    T+     R     +  LK  ++M  +F + P AL  T
Sbjct: 244  DVLMHRASRRQLADVLTCMREHITIDQIGTRALPNSERRLKPGADMARLFRNHPAALRRT 303

Query: 275  VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
            +EIA +CSF L   +           D   +  +  L   A  GL+ R   GA       
Sbjct: 304  LEIADKCSFDLGELSYEY-----PHEDTADETPQMRLERLAHEGLKHRYPDGA------P 352

Query: 335  QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
                Q +  EL+V+  + F  YFL V D +Q+AK   I    GRGS A S+  Y L ITD
Sbjct: 353  DRALQLMAKELDVVRELNFPAYFLTVHDIVQFAKSQGIL-CQGRGSAANSILCYLLGITD 411

Query: 395  IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
            + P   +++FERF++  R   PD D+DF  +RR+EVI+++  KYG  R     T    + 
Sbjct: 412  VSPDMIAMVFERFVSKHRGEPPDIDVDFEHERREEVIQWIYRKYGRHRAGLCATVIHFRT 471

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            +AA+R+VG+ + +     D    L             +               +  +  I
Sbjct: 472  RAAIREVGKVMGLS---QDVTAGLSSQIWGMTNGGVDLDRVRELGLDPKDRRLMQTIRLI 528

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
             + + G  RH S H  G VI    L +L P+      D  V  ++   I+  G++K D L
Sbjct: 529  GE-IIGFPRHLSQHVGGFVITRGRLDELAPIENASMEDRTVICWDKDDIDALGILKVDVL 587

Query: 575  GLKTLTLLQKSLDFLAQRGVKVD-LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL  L+ ++K+   +         ++ +P  D  TY +L     +G+FQ+ES      L 
Sbjct: 588  GLGMLSCIRKAFALMQSHENITHSIASVPQGDKATYDMLCRADAIGVFQVESRAQMNFLP 647

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
             M+P    D++  V++ RPGPI   +   Y  R+NG+E I    P +  + + T GV ++
Sbjct: 648  RMRPREFYDLVIEVAIVRPGPIQGDMVQPYIRRRNGQENIEPFGPALQEVTRRTLGVPLF 707

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIF 750
            QEQ MQIA + +G+S  EAD LRR++    +   + K +++FI+G  KNG S  +A   F
Sbjct: 708  QEQAMQIAVVGAGFSAEEADHLRRSLASFRRMGTIGKYRDKFIAGMLKNGYSPDVAERCF 767

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
              +  FADYGF +SHAAA+A+++Y +AW+K H+P  F  A +  +        +  +D R
Sbjct: 768  GQIEGFADYGFPESHAAAFAMLAYVSAWLKCHHPAIFGCALLNSQPMGFYAPAQIVRDVR 827

Query: 811  QFNIQIMPPSVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
            +  ++  P  VN    D  +         +      IKG     A  I+ A  +  +   
Sbjct: 828  EHGVETRPVCVNKSTWDNTLERRPDGALALRLGFRQIKGFKEEDANWIVAARGNG-YPDP 886

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
            +    R   +     VL  L  A A    G +R   L  +  I          ++ +   
Sbjct: 887  QALWLRAGIRP---AVLTRLAEADAFADTGLTRRDALWHVKAI----------QSPEPLP 933

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            +F         K         N       +          HP+++ +P L   G+  +  
Sbjct: 934  LFNDPIDGEIIKEPAVHLPDMNLGEEVVEDYVSTRLTLRAHPMELLRPALP--GLVTHAS 991

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                  G    +  +V+++Q+  T  G  + ++T  +         +
Sbjct: 992  LQDIPLG-RYSVCGLVITRQRPGTASG--VIFLTLEDETGVSNVVVW 1035


>gi|16127441|ref|NP_422005.1| DNA polymerase III subunit alpha [Caulobacter crescentus CB15]
 gi|221236252|ref|YP_002518689.1| DNA polymerase III subunit alpha [Caulobacter crescentus NA1000]
 gi|68565607|sp|Q9A3J3|DNAE2_CAUCR RecName: Full=Error-prone DNA polymerase
 gi|239977206|sp|B8H427|DNAE2_CAUCN RecName: Full=Error-prone DNA polymerase
 gi|13424891|gb|AAK25173.1| DNA polymerase III, alpha subunit, putative [Caulobacter crescentus
            CB15]
 gi|220965425|gb|ACL96781.1| DNA polymerase III alpha subunit [Caulobacter crescentus NA1000]
          Length = 1083

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 251/1067 (23%), Positives = 436/1067 (40%), Gaps = 99/1067 (9%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            + P +  LQ  +++S L GA     +     A    AI I D N+L   +     A    
Sbjct: 2    RPPVYAELQATTNFSFLRGASHAEELALTAEALGLTAIGIVDRNSLAGVVRAWTAAKRRS 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+ + GC+LD                    PS++   +  E + RL  L++   L  + K
Sbjct: 62   IRVLTGCRLDF---------------MDGAPSLLCYPTDREAFGRLTRLLTIGQLRAE-K 105

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +      +  +EG + L       +      +S +   + L         R ++  
Sbjct: 106  GECHLTWRDFLD-HSEGQLGL------IVPPRVLDDSFE---QHLTRMAGDLRGRSWLAA 155

Query: 187  QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQKD 244
             R +   D  R +++  L  T   P+VATN+ L+   E     DV+  V     +     
Sbjct: 156  SRAYAARDLQRLARLESLGRTSGAPIVATNDVLYHGPERRPLQDVISCVREHCAIQEAGF 215

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R     + ++K+  EM  +F   P A+E TVEI  R  F L+      P           
Sbjct: 216  RLEANAERHIKSPEEMARLFDRWPRAVERTVEIVERIGFDLKDIREQYPDEPVPPG---- 271

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K     L +    G   R   G       +     ++  EL +I +M +  YF+ V D +
Sbjct: 272  KTAMQHLTDLTWKGAAWRYPNGV------SPKVTAQIQEELRLIEKMDYPNYFITVHDIV 325

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            + A+   I    GRGS A S   + L +T IDP    LLF RF++ +R   PD D+DF  
Sbjct: 326  REARSMGIL-CQGRGSAANSSVCFCLGVTAIDPTEHRLLFTRFISENRGEPPDIDVDFEH 384

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR+EV++YV  +YG    A   T    + ++A+RDVG+AL +       L   +     
Sbjct: 385  DRREEVMQYVFQRYGRAYAAICGTVIHYRPRSAIRDVGKALGLTEDVTSLLAGTVWGSWG 444

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +    +    R        P + R + ++  L G  RH S H  G V+  R L + VP
Sbjct: 445  DGLPEDHL----RNAGLDPKAPEIARAVGLANDLIGFPRHLSQHVGGFVLTKRRLDETVP 500

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS---LI 601
            + +    D    +++   I+  GL+K D L L  L  +Q+++  L +   +  L     I
Sbjct: 501  IGKAAMKDRTFIEWDKDDIDSLGLMKVDILALGMLHAIQRAMTMLREDHGQDWLKDLADI 560

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P +    Y +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+
Sbjct: 561  PKEVPGVYDMLCAADSVGVFQVESRAQMSMLPRLRPREFYDLVIQVAIVRPGPIQGDMVH 620

Query: 662  NNRKNGKEKIVSIHP----------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
               K   ++     P           +  +L +T GV ++QEQ M +A   + ++  EAD
Sbjct: 621  PYLKRRNKEEPVDWPKPSPEHGPPDELQEILGKTFGVPLFQEQAMSLAIEAAKFTPDEAD 680

Query: 712  VLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LR+AM         D  + +FI G    G  +  A   F+ +  F+ YGF +SHAA++A
Sbjct: 681  GLRKAMATFRNLGSPDAYRNKFIEGMVGRGYERAFAERCFKQIEGFSHYGFPESHAASFA 740

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             + Y +AW+K  +P  F AA +  +     +  +  +DAR+  ++++PP + T   D  +
Sbjct: 741  KLVYVSAWIKWAWPDVFCAALINAQPMGFYQPAQLVRDAREHGVEVLPPDILTSDWDCTL 800

Query: 831  GD------------------------NRIYYSLAAIKGVGTT-TARHIMEASADKPFDSL 865
                                        +      IKG+  T     +++A  +    + 
Sbjct: 801  APISTGFRPPRVRHDKVACQETRPRWKAVRLGFRQIKGLRETLDIPPLLKARGEGA-RTP 859

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             +F        + ++ LE L  A A    G SR + L ++  +        +++      
Sbjct: 860  AEFAQ----GGVPQKALELLAEADAFASVGLSRREALWAVKGL------KGEHKAPVQAP 909

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            + A     F +++ L   +    +     + R        HP+  Y+ +L   G+   E 
Sbjct: 910  LLAGLP-LFEERVALPAMAA---TQEVAEDYRTTSLSLKAHPIGFYRSMLAARGVVPAER 965

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++   G  + +A +V+ +Q+  T KG  + +VT  +      A  +
Sbjct: 966  LLSLKDGARVSVAGLVLIRQRPGTAKG--VVFVTLEDETGVANAVVW 1010


>gi|209884317|ref|YP_002288174.1| error-prone DNA polymerase [Oligotropha carboxidovorans OM5]
 gi|209872513|gb|ACI92309.1| error-prone DNA polymerase [Oligotropha carboxidovorans OM5]
          Length = 1107

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 245/1069 (22%), Positives = 425/1069 (39%), Gaps = 102/1069 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------C 63
            ++  + + +++S L GA      + K +     AI I D N L   +    +        
Sbjct: 2    TYAEIGITTNFSFLRGASHPQEYVHKASRYGLYAIGIADRNTLAGVVRAYGELGNRNRKV 61

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
                + +IG +L  D                  P I+      E Y RL +L+S+  L  
Sbjct: 62   RYNPKLLIGTRLVFDDG---------------TPDILAYPRDREAYGRLCQLLSKGKLRG 106

Query: 124  QGKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
            + K    +    L E  +EG  L++++               S+   + L   K+L  + 
Sbjct: 107  E-KGECHLRFDDLAEF-SEGQLLVVVSSYRF----------DSEKILRVLGALKELPAEG 154

Query: 182  LYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            +++       G DR R  ++  LA    + L+ATN+ L+         DVL  +     +
Sbjct: 155  VWLAATLFFHGDDRRRMLRLEHLAAKTHVSLIATNDVLYHFHRRRALQDVLSCIREKVTI 214

Query: 241  SQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             +  R      + +L+   EM  ++ D P+ALE T+  + R +F L       P      
Sbjct: 215  HEAGRRLEAHAERHLQPHKEMARLYKDFPDALEETIRFSDRITFSLDQLKYQYPDEPVPP 274

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 K  +  LR+    G+     +G        +  R  ++ EL +I ++ ++ YFL 
Sbjct: 275  G----KTAQEHLRDLTETGIRKYFPEGID------EGLRGTIEKELRLIEKLGYAHYFLT 324

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D +++A+  +I    GRGS A S   + L IT ++P    +LFERF++ +R+  PD D
Sbjct: 325  VHDVVRYARSQHIL-CQGRGSAANSAVCFMLGITSVNPAETDVLFERFISEERLEPPDID 383

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF   RR+EVI+ V  +YG  R A + T    + ++A+RDVG+AL +       L   +
Sbjct: 384  VDFEHSRREEVIQCVFQRYGRHRAAIVATVIDYRPRSAIRDVGKALGLTEDVTAALADTV 443

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                   +S   +            +P + R +E++ +L G  RH S H  G V+    L
Sbjct: 444  WGSWGDSLSEMQVKQ----AGFDPTNPMIVRAVELATELIGFPRHLSQHVGGFVLTQDRL 499

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-- 597
               VP+      D    +++   I+   ++K D L L  LT ++K  D +A    +    
Sbjct: 500  DTYVPIGHAAMEDRTFIEWDKDDIDILKMMKVDVLALGMLTCIRKCFDLIADHKGRRYEL 559

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
              +   DD   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI  
Sbjct: 560  ADVRSKDDDPVYKMLQRGESLGVFQVESRAQMNMLPRLKPRTFYDLVIEVAIVRPGPIQG 619

Query: 658  IVVYN---NRKNGKEKIVSIHP------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             +V+     R    E+I   +P       +  +L +T GV ++QEQ M+IA   + ++  
Sbjct: 620  NMVHPYLKRRNLKPEEIEYPYPKGGNPDELKSILHKTLGVPLFQEQAMRIAMAAAEFTSE 679

Query: 709  EADVLRRAMGKKIKEEMDK-QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            EA+ LRRAM            +ER +    K G     A + F+ +  F  YGF +SHAA
Sbjct: 680  EANGLRRAMATFRHVGTMPKFEERMVGRMIKRGYDPKFAQSCFDQIKGFGSYGFPESHAA 739

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            A+A + Y +AW+K  +P  F    +  +        +   DAR   + +    V+     
Sbjct: 740  AFAQLVYVSAWLKCFHPDAFACGLLNSQPMGFYAPAQIVGDARTNGVDVREIDVSFSFSQ 799

Query: 828  FKVGDN-----RIYYSLAAIKGVG------------------TTTARHIMEASADKPFDS 864
              + +       +      I G                        R I+EA   +PF S
Sbjct: 800  NTLEEKSGRHHALRLGFRQIDGFKCVDPDEQEWRRRQGKDPLEDWGRAIVEARMQQPFAS 859

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            LEDF       +L +R L  L  A A    G  R   L ++  +                
Sbjct: 860  LEDFAR---ETRLPKRALILLADADAFRSLGLDRRSALWAVRRLPDAV----------PL 906

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
             +F                           + + +     GHP++  + +  + G+    
Sbjct: 907  PLFQSAAAREQPDEGSSPLPQMPLPEEVVADYQTVRLSLKGHPMEFLREMFEQEGVVPCA 966

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                      +R A +V+ +Q+  +  G  + ++T  +         +P
Sbjct: 967  AVSHENDKRRVRCAGVVLVRQRPGSANG--VVFMTLEDETGIANIVVWP 1013


>gi|327439235|dbj|BAK15600.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046]
          Length = 1024

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 351/1023 (34%), Positives = 563/1023 (55%), Gaps = 47/1023 (4%)

Query: 15   QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN-LFSALEFSQKACAAGIQPIIGC 73
            QV +S  LL+  + ++ ++  +   +  + AI   N  L+  L F  +   AGI P++G 
Sbjct: 6    QVRTSADLLKSTIRIDELIPFLHHQKAKSCAI--VNTKLYGLLPFWFEMKRAGIHPVVGL 63

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + +++ +   +             +VL   T EGY+ L+++ S + +  +      I L
Sbjct: 64   TIQLELTEEQSLP------------LVLYAKTNEGYRNLLKISSSIAIRPEQ----TIPL 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
             WL   G +G+  +         +A +      AE  L  F K + D +Y+ + R     
Sbjct: 108  RWLLAYG-KGIAFMIPALE---QQAIWLQQM--AEPVLAEFMKAYPDEVYIGISRLSDTS 161

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
               ES  VQLA  + LP+VAT+ SLF +EED+ A++V  A+     ++   +     +++
Sbjct: 162  S-LESSAVQLAEKNALPIVATHESLFFNEEDFFAYEVAQAIHTGVKLNDAVQSNK-QENH 219

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            L    +    F D  + L  +  +   C   L  +   +P+F   E +      EN L+ 
Sbjct: 220  LLTAEQWQQKFHDQQQWLVQSENLLLSCQIELNTNNVYMPKFPVGEGE----TAENLLQQ 275

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            + + GL+ R     +        Y +R+++EL+VI  M +S YFLIVADF+Q+A++  I 
Sbjct: 276  QVMTGLQRR-----LNTNTLPGHYVERMNYELHVIQSMGYSDYFLIVADFMQFAREAQIL 330

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
             GPGRGS A S+ A+AL IT +DPL++ LLFERFLNP+R+++PD DIDF   RR EVI+Y
Sbjct: 331  TGPGRGSSASSLVAFALEITQVDPLQYDLLFERFLNPERITLPDIDIDFLDTRRHEVIQY 390

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            V  KYG + VAQIITFG+L AKA  RDV R        ++ + KLIPN P   +     A
Sbjct: 391  VAKKYGKQYVAQIITFGTLSAKAVARDVARMFNFESEALEMISKLIPNKPGITLKEA-YA 449

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                 R    A+P   +  + S +LEGL R+ASTHAAG+V+   PL  +VP+  +    +
Sbjct: 450  MSENLRAWITAEPIRQKWFQTSLRLEGLPRNASTHAAGVVLSPVPLVDVVPIE-EGHDGI 508

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLL 612
             +TQ+ M+ +E+ GL+K DFLGL+ LT+L++           +++ + IP +D +T+ LL
Sbjct: 509  FLTQWPMQEVEQNGLLKIDFLGLRNLTILEQIRKSIQFTHNRQINFNHIPLNDEKTFELL 568

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
                T GIFQLES GM+ AL  ++P    DI+A+ +LYRPGP++ I +Y  RK+ KE+++
Sbjct: 569  QNGDTNGIFQLESDGMKNALREIKPTHFLDIVAVNALYRPGPMEFIPMYARRKHKKEQVI 628

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
              HP + P+L+ET GVIIYQEQ+M+IA +++G+S  +AD+LRRA+ KK ++ +++Q+  F
Sbjct: 629  MPHPHLTPILEETYGVIIYQEQIMRIANVMAGFSFGQADLLRRAVSKKKRDVLEQQRASF 688

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            + GA   G ++  A  ++ L+ +FADYGF KSHA AY+VISYQ A++K +YPV F AA +
Sbjct: 689  VKGALTKGYTQQAAEEVYALIVRFADYGFPKSHAVAYSVISYQMAYLKANYPVNFYAALL 748

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            T    N +K+ +   +A+   I+I+PPS+N     FKV   +I +SL+AI+GV     + 
Sbjct: 749  TNATGNPDKLAQILMEAKAKGIEILPPSINRSMRHFKVESGKIRFSLSAIRGVPQPFMQK 808

Query: 853  IMEASADK--PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
            ++ A  ++  PFDS+ D    + +   NR+++E L+ AGALD FG  R  LL +++  QK
Sbjct: 809  LLLAREERQKPFDSIFDLAVTLTTANFNRKIIEPLIKAGALDEFGKDRATLLATIEGAQK 868

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
             A +V        +++F      F  K    + S     ++ + E+ VLGFY S HP+  
Sbjct: 869  QADFVR----PGGDDLFEGALLAFG-KPKYSETSPIPEKIKLQYEKDVLGFYLSDHPIVK 923

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +    ++     +          +++   V   +Q +T++G  + +V   +        
Sbjct: 924  LRSQFPEVTA-TVQTLAQLKDNAFVKIIGQVREMRQLRTKRGELMAFVQMEDEYGTVSLT 982

Query: 1031 FFP 1033
             FP
Sbjct: 983  LFP 985


>gi|239637978|ref|ZP_04678939.1| DNA polymerase III subunit alpha [Staphylococcus warneri L37603]
 gi|239596541|gb|EEQ79077.1| DNA polymerase III subunit alpha [Staphylococcus warneri L37603]
          Length = 1064

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 322/1024 (31%), Positives = 521/1024 (50%), Gaps = 85/1024 (8%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L +H+SY LL  +L ++++++K   +    +AITDTN L+   +F      AGI P+ G 
Sbjct: 5    LNIHTSYDLLNSSLRISDVVNKAKNEGIETLAITDTNVLYGYPKFYDACIEAGIHPVFGM 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + +        T             VLL    +G + L +L S + + ++      I +
Sbjct: 65   TVYLTDGLYQLET-------------VLLAQNNDGLKDLYQLSSAIKMKEKE----DIPI 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHRG 191
             WL+      +I+  G                  E+    F + F D   +Y+       
Sbjct: 108  EWLKRYANHLIIIFKG-----------------VEEHHQLFIEAFHDKKHVYL------- 143

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                     + +        V  N   +L++ED +    L A+  ++ +          +
Sbjct: 144  -----NQDCIAIENRS---FVWLNTMRYLNKEDADTISALQAIKENSKLDLVAEQEDYHE 195

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            H            +D    +  T EIA+ C+  L  H  +LP+F     +  +     +L
Sbjct: 196  HVFNKNELRNLEINDE--LIIKTDEIAQLCTAELNYHQSLLPQFQTPNGELSKTYLWQKL 253

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
              K                  +  DY +RL  E ++I  M F  YFLIV+D I +AK ++
Sbjct: 254  EEKLNH------------LNLNRPDYWERLKHEYDIITNMGFEDYFLIVSDLIHYAKTHD 301

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++VI
Sbjct: 302  VMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVI 361

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ + KLIP+     +    
Sbjct: 362  QYVQEKYGQLHVSGIVTFGHLLARAVARDVGRIMGFEEITLNEISKLIPHKLGITLEEAY 421

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  F++    +   +R  EI +KLEGL RH STHAAGI+I D  L +  P+      
Sbjct: 422  --QNDEFKQFVHRNYRHERWFEICKKLEGLPRHTSTHAAGIIINDHALYEYAPLTLGDTG 479

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + ++ + +   + +++  IPFDD + + 
Sbjct: 480  --LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIINQVKKDLNISIEIESIPFDDPKVFE 537

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R+ L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R+    K
Sbjct: 538  LLSQGDTTGIFQLESDGVRRVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRQDPSK 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +H  + P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++
Sbjct: 598  VEYLHEDLAPILKNTYGVIIYQEQIMQIASQFANFSYGEADILRRAMSKKNRAVLESERQ 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ GA +NG  + ++  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A 
Sbjct: 658  HFVDGAKQNGYDEYMSKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPNYFYAN 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + + +K      +A+  +I I+PP++N     +K  ++ IY SL AIKGVG  + 
Sbjct: 718  ILSNVIGSEKKTAAMIDEAKHQSITILPPNINESYWFYKATNDGIYLSLGAIKGVGYQSV 777

Query: 851  RHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I++    +  F    DF  R+  +   R++LESL+  GA D FG +R  LL S+D + 
Sbjct: 778  KLIVDERYQNGDFKDFFDFARRLPKRVKTRKLLESLILVGAFDIFGKNRATLLHSIDQVI 837

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 +E++       +F      F+ K + E+    +  +  E E+  LGFY S HP++
Sbjct: 838  DQVTDIEQDDM-----LFDF----FTPKQSYEEKEELSDQLISEYEKEYLGFYISKHPVE 888

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                   K       +         I +       ++ +T+ G  + +VT ++     + 
Sbjct: 889  ---KEFNKKQYLTIYKLSNAKNYQPILV--QFNQIKRIRTKNGQNMAFVTLNDGVHLLDG 943

Query: 1030 NFFP 1033
              FP
Sbjct: 944  VIFP 947


>gi|319943592|ref|ZP_08017874.1| DNA-directed DNA polymerase III alpha subunit [Lautropia mirabilis
            ATCC 51599]
 gi|319743407|gb|EFV95812.1| DNA-directed DNA polymerase III alpha subunit [Lautropia mirabilis
            ATCC 51599]
          Length = 1122

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 267/1081 (24%), Positives = 439/1081 (40%), Gaps = 109/1081 (10%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +   P++  L   S ++ L GA S   + ++  A    A+AITD  +L   +   + + 
Sbjct: 43   AMP-PPAYAELHCLSDFTFLRGASSAAQLFERARACGYQALAITDECSLAGIVRAFEASR 101

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
              G+  I+G +  +                      VLLV    GY+ L  L++      
Sbjct: 102  NTGVPLIVGSEFRLVDG----------------TRFVLLVQDQAGYEALCSLITTGR-RA 144

Query: 124  QGKQSVRICLSWLQEIGTE--GLIMLTG------------------------------GS 151
             GK   R+        G +  GL+ L                                G 
Sbjct: 145  AGKGCYRLTREDFSRSGLDLSGLLCLWLPSPHPDEVQADAPDEQQADVLDGLDGLGARGM 204

Query: 152  SGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELP 210
                         ++A +R    +++F    ++ ++ HR  D       ++ LA    L 
Sbjct: 205  DDEAPAVPESGEDRLALERAAWVRRIFP-HAWLAVELHRDRDDAAVLRHLLALAQKTGLT 263

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
             VA  +     +      D L A+ H   +++        +     R          P  
Sbjct: 264  PVACGDVHMDLKRRRALQDTLTALRHRRPLTEAGGWLF-RNGERHLRRREALAGIYPPAL 322

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
            L  T+EIA+RC+F L       P+ +  E         + LR+ A  GL  R  QGA   
Sbjct: 323  LAETLEIAKRCTFRLDSLQYRYPQELVPEG----HTPTSWLRHLAEQGLRWRWPQGA--- 375

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                +     ++ EL +IA + +  YFL V D +++A+   I    GRGS A S   + L
Sbjct: 376  ---PERVVGLVEHELALIADLGYEPYFLTVHDIVRFARSQGIL-CQGRGSAANSAVCFVL 431

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             I ++DP R  +L ERF++ +R   PD D+DF  +RR+EV +Y+  KYG  R A      
Sbjct: 432  GIVEVDPSRMQVLVERFISRERNEPPDIDVDFEHERREEVFQYIYGKYGRARAALTANVI 491

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
              + ++A RDV RAL  P  QV  +                +A+         A P + R
Sbjct: 492  CYRGRSAARDVARALGFPPDQVTAIGACFGRGGYGDDVTDRLAE----AGFDPATPLMQR 547

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            LL + + L    RH S H  G VI D PLS+LVP+         + Q+N   ++  G++K
Sbjct: 548  LLHLVEALRDHPRHLSQHVGGFVISDGPLSRLVPIENAAMPARTIIQWNKDDLDVLGMLK 607

Query: 571  FDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             D L L  LT ++K+L      RG  +  + IP DD  TY +++   T+G+FQ+ES    
Sbjct: 608  VDCLALGMLTCVRKTLALLARHRGRHLTPATIPPDDDATYDMISAADTVGVFQIESRAQM 667

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQG 687
              L  ++P C  D++  V++ RPGPI   +V+    R+ G E +      +  + + T G
Sbjct: 668  SMLPRLRPRCFYDLVIQVAIVRPGPIQGDMVHPYLRRRQGLEPVNYPSEALREVFERTLG 727

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM-DKQKERFISGASKNGISKTIA 746
            V ++QEQ M++A + +GY+  EAD LRR+M    +    +  ++R + G  + G S   A
Sbjct: 728  VPLFQEQAMKLAIVAAGYTPGEADHLRRSMAAWRRHGDLEIHRQRLVGGMQERGYSLAFA 787

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              IFE L  FA+YGF +SHA A+A+I+Y + W+K H P  F+ A +  +           
Sbjct: 788  ERIFEQLKGFANYGFPESHACAFALITYVSCWLKRHEPAAFVCALLNSQPMGFYSASSLL 847

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNR-------IYYSLAAIKGVGTTTARHIM----- 854
            QDAR+  + + P  V     D  +   +       +      + G+    AR I+     
Sbjct: 848  QDARRHGVTVRPVDVFHSHWDNTLEGGKPGGAQPALRLGFRQVHGLSEAAARRIVAARLA 907

Query: 855  ---EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
                  +   F  + D C R     L+ R    L  AGAL      R     ++  +++ 
Sbjct: 908  LGGAEPSRHAFRDVADLCHRA---GLDAREASLLAEAGALRALATHRHAAHWAVAGVEE- 963

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
                          +FA      S +         + +     + R  G   + HPL + 
Sbjct: 964  -----------PTPLFA-----QSPQEQTVDLPHPSVAQELLADYRSQGLSLTTHPLALL 1007

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +  L++              G  +R A +V+ +Q+  T  G  + +VT  +         
Sbjct: 1008 RSQLQERRCLESRALQDLPHGRGVRAAGLVIMRQRPPTASG--VTFVTLEDEWGTVNVVV 1065

Query: 1032 F 1032
            +
Sbjct: 1066 W 1066


>gi|56695575|ref|YP_165925.1| DNA polymerase III, alpha subunit, putative [Ruegeria pomeroyi DSS-3]
 gi|71151839|sp|Q5LVN0|DNAE2_SILPO RecName: Full=Error-prone DNA polymerase
 gi|56677312|gb|AAV93978.1| DNA polymerase III, alpha subunit, putative [Ruegeria pomeroyi DSS-3]
          Length = 1101

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 260/1062 (24%), Positives = 445/1062 (41%), Gaps = 90/1062 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA----- 64
            ++  L V ++++ L GA     ++ + A     AIAITD N+L   +             
Sbjct: 2    TYAELCVTTNFTFLTGASHPEEMITRAAELGLHAIAITDRNSLAGVVRAYAALKELRREA 61

Query: 65   -AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI------------------VLLVST 105
               I+  I  Q  ID     ++ +      P  P +                  + L   
Sbjct: 62   DEAIR--IRSQHRIDSCSRQEVGHPQPIARPEAPRLPRLITGCRLVLRDSPLHWIALPRD 119

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
               YQRL  L++      + K    + L+ L          L G + G I  A       
Sbjct: 120  RAAYQRLTRLLTLGKRRAE-KGDCHLDLADL----------LAGCT-GMILIALPQGRLD 167

Query: 166  VAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED 224
             A   L   ++ F   +++    R+ G D+   +   +LA     P+VA  ++L      
Sbjct: 168  GALPHLQQVQRRFPGHVFLGAAPRYDGSDQAWLAACARLALRSSAPMVAVGDALMHRANR 227

Query: 225  YEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
             +  DVL  +    T+     R     +  LK  ++M  +F D P AL  T++IA RCSF
Sbjct: 228  RQLADVLTCMREHITIDRIGTRALPNAERRLKGHADMARLFRDHPAALRRTLDIAARCSF 287

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
             L   +         +     +  +  L      G+  R   GA       Q   + +  
Sbjct: 288  CLSELSYEY-----PDEVAEGETPQARLERLTAEGIVRRYPGGA------PQRVHELVAK 336

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL ++A + F  YFL V D +Q+A+   I    GRGS A S+  Y L ITD+ P + +++
Sbjct: 337  ELKLVAELGFPAYFLTVHDIVQFARSQGIL-CQGRGSAANSILCYLLGITDVSPDQIAMV 395

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERF++  R   PD D+DF  +RR+EVI+++  +YG  R     T    +++AA+R+VG+
Sbjct: 396  FERFISKYRGEPPDIDVDFEHERREEVIQWIYQRYGRHRAGLCATVIHFRSRAAIREVGK 455

Query: 464  ALQMPYSQVDRLCKLIP---NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
             + +       L   I    N  A P  ++ +  D   R   L    +  ++       G
Sbjct: 456  VMGLSQDVTASLSGQIWGQSNGGADPERMRELGLDPEDRRLALTIRLIGEII-------G 508

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
              RH S H  G VI    L +L P+      D  + +++   I+  G++K D LGL  LT
Sbjct: 509  FPRHLSQHVGGFVITRGRLDELAPIENAAMEDRTLIEWDKDDIDTLGILKVDVLGLGMLT 568

Query: 581  LLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
             ++K+ D + +   +   +  +P +D  TY +L     +G+FQ+ES      L  M+P  
Sbjct: 569  CIRKAFDLMREHEQRHLSIDTVPQEDAATYDMLCAADAVGVFQVESRAQMNFLPRMRPRT 628

Query: 640  IEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
              D++  V++ RPGPI   +   Y  R+ G EK     P +  +   T GV ++QEQ +Q
Sbjct: 629  FYDLVIEVAIVRPGPIQGGMVQPYIRRRQGLEKAEPFGPELAAVTARTLGVPLFQEQALQ 688

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            IA + +GY+  EAD LRR++    +   +   ++ FI+G  +NG S+ +A   F  +  F
Sbjct: 689  IAVVGAGYTAEEADHLRRSLASFRRMGTIGAHRDTFIAGMRRNGYSQEVAERCFGQIEGF 748

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            ADYGF +SHAAA+A+++Y +AW+K H+P  F  A +  +        +  +DAR   +++
Sbjct: 749  ADYGFPESHAAAFAMLAYVSAWLKCHHPAIFACALLNAQPMGFYAPAQIVRDARDHQVEL 808

Query: 817  MPPSVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
             P  VN    D ++         +      IKG     A  I+ A  +  +   +    R
Sbjct: 809  RPICVNASDWDNRLERRADGALALRLGFRQIKGFREEDAAWIVAARGNG-YPDPQALWLR 867

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
                 +   VLE L  A A    G  R   L  +  I+  A             +F    
Sbjct: 868  A---GVTPAVLERLAEADAFADMGIGRRDALWQVRAIRGQA----------PLPLFNDPL 914

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                           +       +   +      HP+++ +P +   G+  +++  +   
Sbjct: 915  DGEIIHEPQVTLPAMHLGEEVVEDYVSMRLTLRAHPMELLRPAIP--GLTPHDKLASVAA 972

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               + +  +V+++Q+  T  G  + ++T  +         +P
Sbjct: 973  H-RVSVCGLVITRQRPGTASG--VIFLTLEDETGVSNVVVWP 1011


>gi|294851474|ref|ZP_06792147.1| error-prone DNA polymerase [Brucella sp. NVSL 07-0026]
 gi|294820063|gb|EFG37062.1| error-prone DNA polymerase [Brucella sp. NVSL 07-0026]
          Length = 1085

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 252/1046 (24%), Positives = 435/1046 (41%), Gaps = 76/1046 (7%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPII 71
              S++S L GA     ++++  A     I I D N L   +    +       +G +  I
Sbjct: 10   AASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQWKDIRKESGFRLFI 69

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+L               +     P +V+       Y +L  L++        K    +
Sbjct: 70   GCRLSF--------IGCRLSFIDGTPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGECHL 121

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHR 190
              + L     +  I +        D A           RL    +     +++ L   H+
Sbjct: 122  EWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTMPHQ 171

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VT 249
            G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R     
Sbjct: 172  GQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLEKN 231

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + +LK   EMV +F D PEA+  T +     +F L       P           K  + 
Sbjct: 232  AERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KTAQQ 287

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L +    G         I         +  ++ EL +IAR+++  YFL V D +  A++
Sbjct: 288  HLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTHARE 342

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +RR+E
Sbjct: 343  KGIL-CQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHERREE 401

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       +  
Sbjct: 402  VMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGGIDR 461

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+    
Sbjct: 462  QHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIGPAA 517

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD------LSLIPF 603
                   +++   I++ GL+K D L L  LT ++K+ D + Q   ++       L+ +P 
Sbjct: 518  MDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLASLPR 577

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+  
Sbjct: 578  EDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMVHPY 637

Query: 664  RKNGKEKIVSIHP----------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             +    +     P           +  +L +T+GV ++QEQ M+IA   + ++  EA+ L
Sbjct: 638  LRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEANQL 697

Query: 714  RRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM    K   +   +++ I G    G  +T A N F  +  F +YGF +SHAA++A +
Sbjct: 698  RRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASFAHL 757

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  + +
Sbjct: 758  VYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNILEE 817

Query: 833  N-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +      I G        ++    + P+ ++ED   R+   +L+RR    L  
Sbjct: 818  TPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRL---RLDRRAFTLLAD 873

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            A A       R   L ++  +            ++   +F     +   +    K     
Sbjct: 874  ADAFGSLDIDRRAALWAVRRL----------PNDETLPLFRAAAASELAQEPRTKLPEMA 923

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +S     +         GHPL   +  L   G+           G  +++A +V  +Q+ 
Sbjct: 924  ASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVRQRP 983

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + KG  + ++T  +         +P
Sbjct: 984  GSAKG--VVFLTIEDETGIANIVIWP 1007


>gi|239830917|ref|ZP_04679246.1| DNA polymerase III, alpha subunit [Ochrobactrum intermedium LMG 3301]
 gi|239823184|gb|EEQ94752.1| DNA polymerase III, alpha subunit [Ochrobactrum intermedium LMG 3301]
          Length = 1078

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 252/1052 (23%), Positives = 438/1052 (41%), Gaps = 83/1052 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC----AA 65
             F  +   S++S L GA     ++ +  A     I I D N L   +            +
Sbjct: 4    RFFEMAAASNFSFLCGASHPQELVLQAHALGLSGIGIADRNTLAGVVRAHAAWKEFRDKS 63

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
              +  IGC+L                     P +V+       Y +L  L++        
Sbjct: 64   DFRLFIGCRLSFTDG---------------TPDMVVYPRDRAAYGQLCRLLTEGKTRAAT 108

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            K    +  S L     +  I +              +    A++      K     +++ 
Sbjct: 109  KGECHLEWSDLLFRARQFQIAVFPPED---------DRPDFADRLAD-IAKAAPGSVWLA 158

Query: 186  L-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L   H+G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    
Sbjct: 159  LAMPHQGQDGRRAERIARFAAEANVPLIATNDVLYHHPDRRALQDVLTATRHYTTVFAAG 218

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            +      + +LK   EM+ +F D PEA+  + + A   +F L       P          
Sbjct: 219  QLLEKNAERHLKPPREMLRLFRDYPEAVAASADFAAPITFRLDELKYAYPDEPIPPG--- 275

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             K     L +    G         I         +  ++ EL +IA++++  YFL V D 
Sbjct: 276  -KTARQHLHDLTWEGAARHYGADTI-----PPKVQALINKELALIAQLQYEPYFLTVYDI 329

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +A+   I    GRGS A SV  + L IT ++P    LLFERF++ +R   PD D+DF 
Sbjct: 330  VNYARGEGIL-CQGRGSAANSVVCFCLGITGVNPTEVDLLFERFISAERQEPPDIDVDFE 388

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +    
Sbjct: 389  HERREEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLTEDVTAALANTVWGIS 448

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  Q I    R       +P + R +E++  L G  RH S H  G V+    L + V
Sbjct: 449  GGGIDKQHI----RQAGLDPENPIIRRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETV 504

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD------ 597
            P+      D    +++   I++ GL+K D L L  LT ++K+LD + Q   ++       
Sbjct: 505  PIGPAAMKDRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKALDLIHQHKPQLYGGEKLT 564

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P +D   Y +L T  +LG+FQ+ES      L  ++P    D++  V++ RPGPI  
Sbjct: 565  LANLPREDKRVYDMLCTGDSLGVFQVESRAQMNMLPRLKPREFYDLVIEVAIVRPGPIQG 624

Query: 658  IVVYNNRKNGKEKIVSIHP----------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             +V+   +   ++  S  P           +  +L +T+GV ++QEQ M+IA   + ++ 
Sbjct: 625  DMVHPYLRRRNKEEPSTLPSPAPEHGPPDELRQILGKTKGVPLFQEQAMRIAMEAAKFTP 684

Query: 708  SEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             EA+ LRRAM    K   +   +++ I G  + G  +T A N F  +  F +YGF +SHA
Sbjct: 685  DEANQLRRAMATFRKMGTIHTMEQKMIEGMVRRGYDRTFAENCFNQIKGFGEYGFPESHA 744

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A++A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    
Sbjct: 745  ASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQW 804

Query: 827  DFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
            D  + +       +      I G        ++    + P+ ++ED   R+   +L+RR 
Sbjct: 805  DNILEETPDIRLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRL---RLDRRA 860

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
               L  A A       R   L ++  +            ++   +F     +   +    
Sbjct: 861  FTLLADADAFGSLDIDRRAALWAVRRL----------PNDETLPLFRAAATSELAEEPRT 910

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            K     +S     +         GHPL   +  L   G+           G  +++A +V
Sbjct: 911  KLPEMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVV 970

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +Q+  + KG  + ++T  +         +P
Sbjct: 971  TVRQRPGSAKG--VVFLTIEDETGIANIVVWP 1000


>gi|269795426|ref|YP_003314881.1| DNA polymerase III subunit alpha [Sanguibacter keddieii DSM 10542]
 gi|269097611|gb|ACZ22047.1| DNA polymerase III, alpha subunit [Sanguibacter keddieii DSM 10542]
          Length = 1117

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 291/1085 (26%), Positives = 468/1085 (43%), Gaps = 89/1085 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L  HS++S L+GA     +  +       A+A+TD + L+  + F++ A   G+ 
Sbjct: 11   PEYAELHAHSAFSFLDGANQPEELAAEAYRLGLTALALTDHDGLYGVVRFAEAARQLGLP 70

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I G +L +       +      P P    +++L    +GY+ L   ++  +L    K +
Sbjct: 71   TIFGAELHL-PDAVGTLDAPTGVPDPRSEHLLVLARGPQGYRNLSSAIAEGHLSTGRKGA 129

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN---SSQVAEKRLLTFKKLFG-DRLYV 184
                L  L        ++LTG   G +  A         + A  +L      FG D + V
Sbjct: 130  ADHSLEELGARADGQWLVLTGCRKGAVRSALGSGPTWDPRGAATQLDRLVATFGRDNVAV 189

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQ 242
             +      YD  R   +  LA+   + LVAT  + +    D +    L AV   S++   
Sbjct: 190  EVTSTGDPYDDERNEHLAALAHAARVDLVATTAAHYAHPRDADLAAALAAVRARSSLDDM 249

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                   P  +L++  EM++  S  PEA+     +   C+F L + AP LP +       
Sbjct: 250  DGWLPGAPSAHLRSAGEMLARHSAHPEAVTAAARLGAECAFDLSLVAPNLPPYPVPAG-- 307

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                E   LR     G       G          Y  ++D EL +I  + F GYFL+V D
Sbjct: 308  --HTEATWLRELVRRGAL--HRYGPRESERVPGAY-AQIDRELRIIEDLTFPGYFLVVYD 362

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++ + N I    GRGS A S   YAL IT +D +   LLFERFL P+R   PD D+D 
Sbjct: 363  LVEFCRVNGIL-AQGRGSAANSAVCYALGITAVDAVAHGLLFERFLAPERDGPPDIDVDI 421

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EVI++V + +G    AQ+    S + ++A+RD  RAL     Q D   K I   
Sbjct: 422  ESQRREEVIQHVFDTFGRRHAAQVANVISYRPRSAVRDAARALGYDTGQQDAWSKQIERW 481

Query: 483  P--------------AHPVSLQAIADDSRFREA--------------------------- 501
                             P      A + R R                             
Sbjct: 482  GSLRPAPPSPEAVAAGMPEGKPYGALEQRERIRDPLVEPTARDDRAMAREGMWVKGGHAP 541

Query: 502  -RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
             R  +   D +++++++   L RH   H+ G+V+ DRP+ ++ P+         V Q++ 
Sbjct: 542  QRDTEDIPDAVVDLAERFLRLPRHLGIHSGGMVMCDRPVIEVCPVEWARMPGRTVLQWDK 601

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
            +    AGL+KFD LGL  LT L+ +        GV++ L  +P +D   Y LL    T+G
Sbjct: 602  EDCADAGLVKFDLLGLGMLTALRIAFEQVSTHEGVELTLHGLPQEDPGVYRLLCAADTIG 661

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNRKNGKEKIVSIHPL 677
            +FQ+ES      L  +QPDC  DI+  V+L RPGPI       Y  RK G+EK+  +HPL
Sbjct: 662  VFQVESRAQISTLPRLQPDCFYDIVIEVALIRPGPIQGNSVHPYIARKRGREKVTYLHPL 721

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGA 736
            ++  L +T GV ++QEQ+MQ++  L+ ++ +EAD LRRAM  K+  E+M+   ER +SG 
Sbjct: 722  LEKSLGKTLGVPLFQEQLMQMSIDLADFTPTEADALRRAMGSKRSTEKMEALHERLLSGM 781

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
             K GI +     IF+ L  FAD+GF +SHA ++A + Y +AW+K H+P  F A  +  + 
Sbjct: 782  EKKGIDRVAGEEIFDKLKGFADFGFPESHAYSFAYLVYASAWLKVHHPEAFYAGLLAAQP 841

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-------DNRIYYSLAAIKGVGTTT 849
                  +    DAR+ ++ ++ P +        V           +   LA+++ V T  
Sbjct: 842  MGFYSPQSLVADARRHDVPVLRPDLLASQPQAAVEPAPGSARGLAVRLGLASVRTVTTEV 901

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            A  ++       PF  L D   RV   +L    LE+L  AGALDC G  R + L +   +
Sbjct: 902  AERLVAERTEHGPFLDLRDLARRV---RLTTAQLEALATAGALDCLGVERREALWAAGAL 958

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                         + + +     G     ++       +       +    G     +P 
Sbjct: 959  ----------AQERPDTLPGVSVG-----VSAPMLPGMSEVETAVADTWSTGVTTESYPT 1003

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
               +P L + G    EE      G  + +  +V  +Q+  T +G  + +++  +   +  
Sbjct: 1004 QYARPGLVRAGAITVEECRTAEEGRRVAVGGVVTHRQRPGTARG--VTFLSLEDETGQLN 1061

Query: 1029 ANFFP 1033
                P
Sbjct: 1062 VICSP 1066


>gi|241518341|ref|YP_002978969.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
            trifolii WSM1325]
 gi|240862754|gb|ACS60418.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
            trifolii WSM1325]
          Length = 1099

 Score =  549 bits (1414), Expect = e-153,   Method: Composition-based stats.
 Identities = 265/1042 (25%), Positives = 458/1042 (43%), Gaps = 77/1042 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  LQV + +S L GA S + +          A+ + D N+L   +   + + A G++ 
Sbjct: 2    RYAELQVTTHFSFLRGASSADELFSTARELAIEALGVVDRNSLAGVVRALEASRATGVRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC+LD+                    SI+L  +    Y RL  L++        K + 
Sbjct: 62   VVGCRLDL----------------QEGMSILLYPTDRGAYSRLTRLLTLGKGRGG-KANC 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
             + L  +    +EGL+ +       +       + +    +L    ++F DR YV+L  R
Sbjct: 105  ILNLDDVALY-SEGLLAIL------VPDL----ADETCAVQLRKMAEIFEDRAYVSLCLR 153

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPR 247
             R  D+ R  ++  +A  H +  V TN+ LF      +  DV+  + ++T +     +  
Sbjct: 154  RRPNDQLRLHELSNMAMRHRVRTVVTNDVLFHDPSRRQLQDVVTCIRNNTTIDDVGFKRE 213

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               D YLK   EM  +F   PEAL  T+EI  RC F L+      P           K  
Sbjct: 214  RHADRYLKPPEEMERLFPRYPEALARTMEIVDRCRFSLEELTYQYPEEAIL----PDKTP 269

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L +     +  R  +G         +  + +  EL++I  MK++ YFL V   +++A
Sbjct: 270  QESLEHYVWECVPNRYPEGL------PPEVLKIVRHELDLIRTMKYAPYFLTVFSIVRFA 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I    GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +RR
Sbjct: 324  RSQGIL-CQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERR 382

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+++   YG ++ A   T    +AK A+RDVG+AL +P   +  L   +       V
Sbjct: 383  EEVIQWIYKTYGKDKAALCSTVTRYRAKGAIRDVGKALGLPEDLIKALSTGMWAWSEELV 442

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            S +++ D    +     D  +   L ++Q+L G  RH   H  G V+    L  LVP+  
Sbjct: 443  SDRSLRD----QGLNPQDRRLALTLRLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEP 498

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606
                D  V +++   +E    +K D L L  LT + K+   + +   +  DL+ IP +D 
Sbjct: 499  AAMVDRQVIEWDKDDVEALKFMKVDILALGMLTCMAKAFALIEEHKDEHLDLATIPQEDQ 558

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 559  ATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVIQVAIVRPGPIQGDMVHPYLRR 618

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE- 723
            + GKE++V   P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M       
Sbjct: 619  REGKERVVYPTPELEAVLGKTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATFKFTG 678

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             + + K++ +SG  +NG +   A   F  L  F  YGF +SHAA++A+I+Y + ++K H 
Sbjct: 679  GVSRFKDKLVSGMIRNGYTAEFAEKTFSQLEGFGSYGFPESHAASFALIAYASNYVKCHC 738

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------NRIYY 837
            P  F AA +  +        +    AR   ++I P  +N    D  +        + +  
Sbjct: 739  PDVFCAALLNSQPMGFYAAAQIVGCARNHGVEIRPICINNSRWDCTLERIGDTDHHAVRL 798

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGY 896
             +  ++G+    A  +  A  D+PF+S++D   R     +    L  L  A A     G 
Sbjct: 799  GMRMVRGLAAADAARVAAARMDQPFESVDDMWRR---SGVPAASLVELAEADAFLPSLGL 855

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV-----ENSSVR 951
             R   L ++  ++                +FA      +  I  ++              
Sbjct: 856  QRRDALWAIKALRDE-----------PLPLFAAASEREARAIAEQQEPEVALRQMTDGHN 904

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +   +G     HP+   +  L +  I    +++    G  +  A +V+ +Q+  + K
Sbjct: 905  VVQDYSHIGLTLRQHPVAFLRKALAERQIVTCAQAMNARDGRWLMTAGLVLVRQRPGSAK 964

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G  + ++T  +         +P
Sbjct: 965  G--VIFMTIEDETGPANVVVWP 984


>gi|314936197|ref|ZP_07843544.1| DNA polymerase III, alpha subunit [Staphylococcus hominis subsp.
            hominis C80]
 gi|313654816|gb|EFS18561.1| DNA polymerase III, alpha subunit [Staphylococcus hominis subsp.
            hominis C80]
          Length = 1067

 Score =  549 bits (1414), Expect = e-153,   Method: Composition-based stats.
 Identities = 332/1025 (32%), Positives = 533/1025 (52%), Gaps = 79/1025 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +HS+Y LL  +L +N+++ K  A+   A+AITDTN L+   +F       GI+PI
Sbjct: 2    FVHLNIHSTYDLLYSSLKINDVVSKAKANGYQALAITDTNVLYGFPKFYDACVNEGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  + +  + +   T             +L     EG   L +L S + +    KQ   
Sbjct: 62   FGMTVMVSDEISTIET-------------ILFAKNNEGLHALYQLSSAINM----KQKTT 104

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L WLQ+      I+    ++               +  + T K    + +++    H 
Sbjct: 105  IPLKWLQKYSYHLAIVFKDANASH-------------QSLIQTLKN--NESVFI---NHT 146

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                      +  +      +V  NN+ +L+ ED +    L A+ ++T +   +  +   
Sbjct: 147  SQ--------LDFSDD---KIVFLNNARYLNPEDADTILALKAIKNNTKLDLVNDIKDAH 195

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            +++  + +      S+   A  NT  +A  C+  +Q H  +LP F        Q+  ++ 
Sbjct: 196  EYFPTSENIKELQLSEKIIA--NTKALADECNAEIQYHQNLLPNFKTPN----QQSAKSY 249

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L  K    L+              Q Y  RL  E ++I  M F  YFLIV+D I +AK +
Sbjct: 250  LLEKLKYNLKEFKLD-------KDQRYIDRLHHEYSIITNMGFEDYFLIVSDLIHFAKTH 302

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            ++ VGPGRGS AGS+ +Y L IT IDP++F LLFERFLNP+R++MPD DIDF   RR++V
Sbjct: 303  DVMVGPGRGSSAGSLVSYLLGITTIDPIKFDLLFERFLNPERVTMPDIDIDFEDTRREKV 362

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +   
Sbjct: 363  IQYVQEKYGQYHVSGIVTFGHLLARAVARDVGRIIGFDEKTLNEISNLIPHQLGITLEEA 422

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                + +F+         ++  EIS+KLEGL RH STHAAGI+I D+PL    P+     
Sbjct: 423  Y--QNEKFKAFVHKSYRHEKWFEISKKLEGLPRHTSTHAAGIIINDKPLYHFAPLTMGDT 480

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
                +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  +PF+D + +
Sbjct: 481  G--ILTQWTMTEAERLGLLKIDFLGLRNLSIIHQIITQVKKDLNIDIDIERLPFNDQKVF 538

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL+   T GIFQLES G+R+ L  +QP+  EDI+A+ SLYRPGP+  I  Y +R++ + 
Sbjct: 539  KLLSLGNTTGIFQLESEGVRKVLMELQPEHFEDIVAVTSLYRPGPMQEIPTYISRRHRQS 598

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +I  +HP ++P+LK+T GVIIYQEQ+MQIA   + +S  +AD+LRRAM KK +  ++ ++
Sbjct: 599  EIKYLHPDLEPILKKTYGVIIYQEQIMQIASQFANFSYGQADILRRAMSKKNRAILESER 658

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI GA  N    +I+  IFEL+ KFADYGF ++HA +Y+ I+Y  A++K HYP  F A
Sbjct: 659  QHFIEGAVSNNYDASISERIFELILKFADYGFPRAHAVSYSKIAYIMAYLKVHYPNYFYA 718

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              ++  + N  K     ++A+  ++ I+PP +N     +K  +  IY SL AIKGVG  +
Sbjct: 719  NILSNVIGNETKTAIIIEEAKTQSLNILPPDINKSHWFYKATEKNIYLSLGAIKGVGYQS 778

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++    +  +    DF  R+  +   R++LE+L+  GA D FG +R  LL ++D +
Sbjct: 779  VKSIVDERIENGLYKDFFDFTRRIPKRIKTRKLLEALICVGAFDSFGKTRSTLLSTIDEV 838

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                  VE++       +F       + K + E     +  +    E+  LGFY S HP+
Sbjct: 839  IDQVSNVEQDEF-----LF----NMLTPKQSYEDKEEFSDQIISAYEKEYLGFYISNHPV 889

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            +    I + +GI   + S+         +   V   +Q +T+ G  + ++   +     +
Sbjct: 890  EKLFYIKQYLGIFTIKNSLDYQP-----ILVQVNQFKQIRTKTGQHMAFLVLDDGRTTID 944

Query: 1029 ANFFP 1033
               FP
Sbjct: 945  GVLFP 949


>gi|83312099|ref|YP_422363.1| DNA polymerase III, alpha subunit [Magnetospirillum magneticum AMB-1]
 gi|82946940|dbj|BAE51804.1| DNA polymerase III, alpha subunit [Magnetospirillum magneticum AMB-1]
          Length = 1022

 Score =  549 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 262/1029 (25%), Positives = 437/1029 (42%), Gaps = 74/1029 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQ  S+Y+ LEGA   + +    +A    AIAI D N L   +     A AAGI+ +
Sbjct: 4    YAELQTLSNYTFLEGASHADELAITASALGLEAIAICDRNTLSGIVRAHVAAKAAGIRLV 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +LD+                    S++   +    Y RL  L++        K    
Sbjct: 64   VGARLDLTDG----------------ASLLCFPTDRAAYGRLSRLLTLGRRR-APKGECH 106

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RH 189
            +  + + E     +++L                 +    +L  ++ + GDRLY+    R 
Sbjct: 107  LARADVAEHAEGQILVLIAPDPLE----------EGFAAQLAEWRTVVGDRLYLAATRRF 156

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV-VSQKDRPRV 248
            RG D  R   +        +PLVATN+ L+ +       DVL  +   T   +       
Sbjct: 157  RGDDGERLRVLAGF----GIPLVATNDVLYHTPARRPLADVLTCIRQGTTLAAAGWALSA 212

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              + +LK+ +EM  +F+  PEAL N +E+ RRC F L   A                + +
Sbjct: 213  HGERHLKSPAEMARLFAACPEALANGLEVVRRCRFSLDELAYEY-----PNEVAAGMDPQ 267

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L      G   R  +G           + +L  EL +I ++ F+ YFL V   + +A+
Sbjct: 268  ERLEILTRQGAARRYPRGV------PPKVQAQLAHELALIRQLGFAPYFLTVHAIVAFAE 321

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I    GRGS A S   Y L +T +DP +  LLFERF++ +R   PD D+DF  +RR+
Sbjct: 322  SRGIL-CQGRGSAANSAVCYCLRVTPVDPAQMDLLFERFISAERGEPPDIDVDFEHERRE 380

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+++ + YG  R     T    + ++A+RDVG+ + +    V+ L K         + 
Sbjct: 381  EVIQHIYDTYGRHRAGLTATVIHYRTRSAIRDVGKVMGLSEDTVEALAKANSGWGRRGIK 440

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                 +  R       +P + R L ++++L G  RH S H  G VI    L +LVP+   
Sbjct: 441  ----DEHVRELGLDPTEPGLARTLSLAEELTGFPRHLSQHVGGFVISKGRLDELVPIENA 496

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607
               D  V Q++   ++  GL+K D L L  L+ ++K+ D L    G  + L+ +P +D  
Sbjct: 497  GMEDRTVIQWDKDDLDALGLMKVDVLALGMLSCIRKAFDLLRLHHGRDLCLATLPREDAS 556

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            TY +L     +G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+   +  
Sbjct: 557  TYDMLCKADAVGVFQVESRAQMSMLPRLRPRRFYDLVVEVAIVRPGPIQGGMVHPYLRRR 616

Query: 668  KEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-E 724
            + K  +      +  +L +T GV ++QEQ M+IA + +G++ SEAD LRRAM       +
Sbjct: 617  QGKETVDYPSEELRQVLGKTLGVPLFQEQAMKIAMVAAGFTASEADGLRRAMATFRHTGQ 676

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +    ++ I G    G  +  A  +F+ +  F +YGF +SHAAA+A + Y +AW+K HYP
Sbjct: 677  VGAYGDKLIGGMVARGYERDFAERVFKQIEGFGEYGFPESHAAAFAHLVYVSAWLKCHYP 736

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
              F  A +  +        +  +DA    ++I P  VN    D  +    +   L  + G
Sbjct: 737  AAFACALLNSQPMGFYAPAQIVRDAADHGVEIRPVDVNHSDWDCTLEGKALRLGLRQVSG 796

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +       +  A     + S         +  L R  L+ L  A A    G  R +   +
Sbjct: 797  LARRDGERLAAARGAG-YASAYGLWR---TSGLERAALDRLAAADAFGSMGLGRREAAWA 852

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +           K        +F         K+ L   SV         +   L     
Sbjct: 853  I-----------KALDAPPLPLFEEAPPPPEAKVALPPASV---GEEVVGDYAALKLSLK 898

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HPL V +   R +GI          +G  + ++ +V+ +Q+  +  G  + ++T  +  
Sbjct: 899  CHPLAVLRDPFRVLGIMTNASLKD-RKGGRVAVSGLVLVRQRPGSANG--VLFITLEDET 955

Query: 1025 KEYEANFFP 1033
                   +P
Sbjct: 956  GIANIVVWP 964


>gi|56477171|ref|YP_158760.1| hypothetical protein ebA3077 [Aromatoleum aromaticum EbN1]
 gi|71151812|sp|Q5P4A4|DNAE2_AZOSE RecName: Full=Error-prone DNA polymerase
 gi|56313214|emb|CAI07859.1| similar to DNA polymerase III alpha chain [Aromatoleum aromaticum
            EbN1]
          Length = 1070

 Score =  549 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 259/1056 (24%), Positives = 432/1056 (40%), Gaps = 92/1056 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC--AAGIQ 68
            +  L   +++S   GA     ++ + A     A+AITD  +L   +   Q+    A  ++
Sbjct: 16   YAELHCLTNFSFQRGASHPEELVARAAEAGYTALAITDECSLAGVVRAHQQLRRLARPLK 75

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             +IG +L +                     +VLL +    Y RL  L++        K  
Sbjct: 76   LLIGSELRLVDG----------------LRVVLLATDRAAYGRLARLITIGR-RAATKGR 118

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             ++  + L          + G  +  +        +           + F D  ++ ++ 
Sbjct: 119  YQLTCADLDRG-------IPGCLALVVPPDDRILDAAALVADARWVGERFPDAAWLAVEL 171

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                 D  R   ++ +A    LP VA   +L          DVL A+     +++  R  
Sbjct: 172  ACGPDDGRRLEALLAIASAAGLPPVAATGALMHDPSRRALADVLAALRLRVTIAEAGRAL 231

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                    +   +++      E L  T+ I  RC F L       P  +  + +      
Sbjct: 232  APNAERALHERAVLA-RRYPAELLAETLRIVARCHFRLDELRYEYPAELVPDGE----TP 286

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR     GL  R   G           R +++ EL +IA + F  YFL V D +++A
Sbjct: 287  ASWLRRLVEDGLRWRH--GRPQDDLAPPKVRAQVEHELALIAELGFEAYFLTVEDLVRFA 344

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I    GRGS A SV  +AL IT++DP    +L ERF++ +R   PD D+DF  +RR
Sbjct: 345  RGRGIL-CQGRGSAANSVICWALGITEVDPELGIMLVERFISKERDEPPDIDVDFEHERR 403

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+YV  KYG ER A   T    +A++ALRDVGRAL +P  Q++RL +      A  +
Sbjct: 404  EEVIQYVYRKYGRERAALAATVIRYRARSALRDVGRALGLPPGQLERLARDRFWFDAGRI 463

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              + + +         A P V RL  +++ L G  RH S H  G VI    L +LVP+  
Sbjct: 464  RPERLRE----AGFDPASPGVQRLATLTEALVGFPRHLSQHVGGFVIARGRLDELVPVEN 519

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDH 606
                +  V Q++   ++  GL+K D L L  L+ L++SL      RG    L+ IP +  
Sbjct: 520  AAMPERTVIQWDKDDLDALGLLKIDVLALGMLSALRRSLALVSTWRGRPFTLADIPREAP 579

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN---- 662
            E Y +L+   ++G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+     
Sbjct: 580  EVYRMLSEADSIGVFQIESRAQMTMLPRLKPARFYDLVVQVAIVRPGPIQGGMVHPYLQA 639

Query: 663  -NRKNGKEKIVSIHPLIDP----------------MLKETQGVIIYQEQVMQIAQLLSGY 705
              R    E +    P                    +L+ T GV I+QEQVMQ+A + +G+
Sbjct: 640  RARIERDEPVSYPQPHCPDADADGTCVPRPDDVRRVLERTLGVPIFQEQVMQLAVVAAGF 699

Query: 706  SLSEADVLRRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            +  EAD LRRAMG   +    ++ + + ++G +  G     A  + + +  F  YGF +S
Sbjct: 700  TPGEADQLRRAMGAFRRHGELERYRAKLLAGMAARGYRAEFAERLCDQIEGFGSYGFPES 759

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAA++A++ Y +AW+K   P  FL   +  +        +  QDAR+  + ++   V   
Sbjct: 760  HAASFALLVYCSAWLKCCEPAAFLCGLLNSQPMGFYAPSQLIQDARRHGVVVLGAEVTAS 819

Query: 825  CVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
              D  +             +   L  +KG G   A  I+ A  ++PF ++++   R    
Sbjct: 820  DWDCTLEALPDASPGAAPAVRLGLQLVKGFGREAAMRIVAARTERPFPNVDELALRARLD 879

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
                +    L  AGAL+     R Q L            +   R                
Sbjct: 880  AAALK---RLAEAGALEPLAGHRRQALWQAAAGHAPEGVLRGARIA-------------- 922

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
                  + +  + +     +   LGF    HPL + +  L  +      E          
Sbjct: 923  --EPRAELAAPSEAQELVADYARLGFTLGRHPLALLRAKLTTLRFVTAAEIRDYPDRKLA 980

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            R+A +V  +Q+  T KG+   ++T  +         
Sbjct: 981  RIAGLVTCRQRPGTAKGTL--FLTVEDETGLANVIV 1014


>gi|189023329|ref|YP_001934097.1| DNA polymerase III subunit alpha [Brucella abortus S19]
 gi|189018901|gb|ACD71623.1| DNA polymerase III subunit alpha [Brucella abortus S19]
          Length = 1071

 Score =  549 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 252/1046 (24%), Positives = 433/1046 (41%), Gaps = 83/1046 (7%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPII 71
              S++S L GA     ++++  A     I I D N L   +    +       +G +  I
Sbjct: 3    AASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQWKDIRKESGFRLFI 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+L                     P +V+       Y +L  L++        K    +
Sbjct: 63   GCRLSFIDG---------------TPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGECHL 107

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHR 190
              + L     +  I +        D A           RL    +     +++ L   H+
Sbjct: 108  EWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTMPHQ 157

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VT 249
            G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R     
Sbjct: 158  GQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLEKN 217

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + +LK   EMV +F D PEA+  T +     +F L       P           K  + 
Sbjct: 218  AERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KTAQQ 273

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L +    G         I         +  ++ EL +IAR+++  YFL V D +  A++
Sbjct: 274  HLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTHARE 328

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +RR+E
Sbjct: 329  KGIL-CQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHERREE 387

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       +  
Sbjct: 388  VMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGGIDR 447

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+    
Sbjct: 448  QHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIGPAA 503

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD------LSLIPF 603
                   +++   I++ GL+K D L L  LT ++K+ D + Q   ++       L+ +P 
Sbjct: 504  MDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLASLPR 563

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
             D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+  
Sbjct: 564  KDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMVHPY 623

Query: 664  RKNGKEKIVSIHP----------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             +    +     P           +  +L +T+GV ++QEQ M+IA   + ++  EA+ L
Sbjct: 624  LRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEANQL 683

Query: 714  RRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM    K   +   +++ I G    G  +T A N F  +  F +YGF +SHAA++A +
Sbjct: 684  RRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASFAHL 743

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  + +
Sbjct: 744  VYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNILEE 803

Query: 833  N-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +      I G        ++    + P+ ++ED   R+   +L+RR    L  
Sbjct: 804  TPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRL---RLDRRAFTLLAD 859

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            A A       R   L ++  +            ++   +F     +   +    K     
Sbjct: 860  ADAFGSLDIDRRAALWAVRRL----------PNDETLPLFRAAAASELAQEPRTKLPEMA 909

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +S     +         GHPL   +  L   G+           G  +++A +V  +Q+ 
Sbjct: 910  ASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVRQRP 969

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + KG  + ++T  +         +P
Sbjct: 970  GSAKG--VVFLTIEDETGIANIVIWP 993


>gi|325104062|ref|YP_004273716.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145]
 gi|324972910|gb|ADY51894.1| DNA polymerase III, alpha subunit [Pedobacter saltans DSM 12145]
          Length = 1053

 Score =  549 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 254/1037 (24%), Positives = 454/1037 (43%), Gaps = 71/1037 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV S++S L GA   + +++  A      IAITD N L   +     A   GI  I
Sbjct: 3    YSELQVTSNFSFLRGASHPDELVETAARLGYAKIAITDRNTLAGIVRGHVAAQKHGIGFI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
              C+LD+                   PS++   +    Y RL  L+S   L  + K    
Sbjct: 63   PACRLDLLDG----------------PSLLAYPTDLAAYSRLSSLLSVGNLRAE-KGKCL 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR- 188
            +    + E  TEG+  +    +  +D +F  N        L  +++    D+L++   R 
Sbjct: 106  LYRQDVFE-HTEGIFFIIIPPA-ELDSSF--NFPADFTDDLKDYQQYLPSDKLFLAAVRS 161

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            ++G D+ R  ++ QL+    +PL ATN+  +   E  E  D+L  +     + Q      
Sbjct: 162  YQGNDQKRLYRLQQLSDRLGIPLAATNDVHYHIAERRELQDILTCIREKCTIYQAGFKLH 221

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + +LK+  EM  +F   P+A+ NT +IA  C F L     + P  +  E     +  
Sbjct: 222  ANAERHLKSVKEMERLFMQYPDAIANTRKIADVCDFSLTDLKYVYPDELTSEG----RTP 277

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + EL      G + R  +        + +  +++  EL  + +   + YFL V D +++A
Sbjct: 278  QQELEYLTWIGAQERFGE------SISHELTEQIGEELAFMKKNNLANYFLTVHDLVRYA 331

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  +I    GRGS A SV  Y L IT +DP R  LLF RF++  R   PD D+DF  +RR
Sbjct: 332  RSKDIL-CQGRGSAANSVVCYCLGITSVDPTRIKLLFARFMSDARNEPPDIDVDFEHERR 390

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KYG +R A + T    + K A+RDVG+A+ +    +  L   +    +  +
Sbjct: 391  EEVIQYIYEKYGRDRAAVVATVTQERYKGAIRDVGKAMGLSVDTISSLSSGVWRYSSEWL 450

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                + +    +     D  + + L+++++L G  R    H  G VI    LS L P+  
Sbjct: 451  ENVDLIE----QGLNSKDLHLRKTLDLTRQLMGFPRQLGQHTGGFVITQGKLSNLCPIMN 506

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG----VKVDLSLIPF 603
                     ++N + IE  G IK D L L  LT ++K+ +   +         D+S    
Sbjct: 507  ARMEGRTCIEWNKEDIEALGFIKVDVLALGMLTCIRKAFNLAKKHYGLDLNLADISRNED 566

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
               E Y +++   T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+  
Sbjct: 567  KHPEVYEMISQADTIGVFQIESRAQMSMLPRLKPKKFYDLVVEVAIVRPGPIQGDMVHPY 626

Query: 664  RKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
                ++   I    P ++ +LK T GV ++QEQ M+IA + +G++ +EAD LRR+M    
Sbjct: 627  LLRRQDPSLIKYP-PKLENILKRTNGVPLFQEQAMEIAIVAAGFTPAEADELRRSMATFK 685

Query: 722  -KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
               ++   +++ + G   NG  K  A  +F+ +  F  YGF +SHAA++A++ Y ++W+K
Sbjct: 686  SHGKVSIFRQKLVDGMVGNGYEKAFAERVFKQIEGFGSYGFPESHAASFALLVYVSSWIK 745

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RI 835
             +YP  F AA +        +  +   DAR+  +++ P  +N    D+ + +       +
Sbjct: 746  CYYPDIFAAAILNSLPMGFYQPAQLVIDARKHGVEVRPVDINYSFWDYVLEEQAGKYRAL 805

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                  + G+       ++     KP+ ++    +      L+   LE L  A A    G
Sbjct: 806  RLGFRQVNGLNIEDMELLVAHRK-KPYSNITQLLN----IGLSISCLEKLADADAFRSIG 860

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R Q L  +  +            +    +F  +      +  +    +  S      +
Sbjct: 861  LDRRQALWEIAAL-----------ADSPLALFEGQPSQSMLEPQI-TLPLLTSGEHVVQD 908

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                      HPL++ +  L  + +    +  A   G  +++A +++ +Q+  T KG  +
Sbjct: 909  YVSTSLSLKAHPLNLLRQQLDLLKVTSTRDLDAVPDGAQVKVAGLILIRQRPGTAKG--V 966

Query: 1016 GWVTFSEPAKEYEANFF 1032
             ++T  +         +
Sbjct: 967  CFITIEDETGYSNVIVW 983


>gi|149377417|ref|ZP_01895161.1| DNA polymerase III, alpha subunit, putative [Marinobacter algicola
            DG893]
 gi|149358341|gb|EDM46819.1| DNA polymerase III, alpha subunit, putative [Marinobacter algicola
            DG893]
          Length = 1039

 Score =  549 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 245/1030 (23%), Positives = 432/1030 (41%), Gaps = 57/1030 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  L   S+++ L GA   + + ++       A+AITD  ++            + ++ 
Sbjct: 5    SYAELFCFSNFTFLTGASHPHELAERALELGYSALAITDACSVAGIPRAWAALRDSPVKL 64

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G   +++                  P  +LL  T +GY +L +L++        K   
Sbjct: 65   ITGSWFELE----------DAPAEAATPRFILLARTRKGYGQLCQLITTGR-RQAEKGQY 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    ++       + L    S  +  A        A       ++LF   L++   R 
Sbjct: 114  RLFFRDIETHSLNDCVCLWLPPSPTVVDA------DQALACGEWLQRLFEPNLWIAAART 167

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +  + ++   LA     P+ AT      S E     DVL  + + T +        
Sbjct: 168  LESGEEQQLARARWLADHLRCPVAATGEVHMHSRERQPLQDVLTTLRNHTNLENAGHCLF 227

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                       ++          E  V   +            L      +         
Sbjct: 228  QNGERYLRPLPVLDRLFPEAWLRETLVIAEQCT-----FEPGSLRYEYPPDLVPGGTSPA 282

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L+     G   R   G         + ++ +  EL++I+ MK+  YFL + D + +A+
Sbjct: 283  AYLKQLTHDGERRRYPSG------TPSNVQRLIRKELSLISEMKYEHYFLTIQDIVAFAR 336

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I    GRGS A S   Y L IT+++P R  LLFERF++ DR   PD D+DF  +RR+
Sbjct: 337  SQGIL-CQGRGSAANSAVCYCLGITEVNPARVELLFERFISKDRGEPPDIDVDFEHERRE 395

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  +Y  ER A   T    + ++A+RDVG+AL    + V++L + I         
Sbjct: 396  EVIQYIYRRYSRERAALAATVIRYRPRSAIRDVGKALGFDPAMVEQLLEGIDWRDKASNW 455

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             Q I D    +         D+   +   L G  RH S H  G VI   PL++LVP+   
Sbjct: 456  RQQILD----KHLTRNPKVADQFFALVNTLLGFPRHLSQHVGGFVISAGPLAELVPVENA 511

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHE 607
              +D  V Q++ + +E  GL+K D L L  LT ++K+L+ +  ++G    +  IP +D  
Sbjct: 512  AMADRTVIQWDKEDLESLGLMKVDVLALGMLTAIRKALELISEEKGTPFTMQDIPLEDQA 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665
            TY +L    ++G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V+    RK
Sbjct: 572  TYAMLQKGDSIGVFQVESRAQINMLPRLKPEKYYDLVIEVAIVRPGPIQGDMVHPYLRRK 631

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEE 724
            +G E +   +  +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM       +
Sbjct: 632  HGLEPVDYPNDAVRNVLERTLGVPIFQEQVIKLAMVAAGFSAGEADQLRRAMAAWKSHGD 691

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +   +++ I+G  + G     A  ++  +  F  YGF +SHAA++A++ Y ++W+K HYP
Sbjct: 692  LTPFRDKLINGMLERGHDADFAERLYLQICGFGGYGFPESHAASFALLVYVSSWIKRHYP 751

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIYYSLAAI 842
              F  A +  +        +  QDAR+ ++ ++PP+VN    +  +   +  +   L  I
Sbjct: 752  AAFYCALLNSQPMGFYSPSQLVQDARRHDVTVLPPNVNHSQWNHTLESPNRHLRLGLRLI 811

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            +G+  + A  +      + + S  +         LN+R +E L  A A+  F  +R Q  
Sbjct: 812  QGLSASGAESLHNNRPAEGYRSTAELR---HLAGLNQRDMELLAGANAMPAFTTNRHQAY 868

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              L   ++ A+            +FA E           +            +    G  
Sbjct: 869  WQLLEHEQPAE------------LFAREAPAHYQPEHCFQLPEPTEGQNVLADYTSQGLT 916

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
               HPL + +           E+      G  +++A +V  +Q+  +  G  + +VT  +
Sbjct: 917  LQRHPLALLREQGHLKFCLSAEQLKNIQPGRPVQVAGLVTGRQRPGSASG--VTFVTLED 974

Query: 1023 PAKEYEANFF 1032
                     +
Sbjct: 975  ETGNVNVVVW 984


>gi|254690379|ref|ZP_05153633.1| error-prone DNA polymerase [Brucella abortus bv. 6 str. 870]
 gi|256258633|ref|ZP_05464169.1| error-prone DNA polymerase [Brucella abortus bv. 9 str. C68]
 gi|260755925|ref|ZP_05868273.1| error-prone DNA polymerase [Brucella abortus bv. 6 str. 870]
 gi|260884948|ref|ZP_05896562.1| error-prone DNA polymerase [Brucella abortus bv. 9 str. C68]
 gi|297247471|ref|ZP_06931189.1| error-prone DNA polymerase [Brucella abortus bv. 5 str. B3196]
 gi|260676033|gb|EEX62854.1| error-prone DNA polymerase [Brucella abortus bv. 6 str. 870]
 gi|260874476|gb|EEX81545.1| error-prone DNA polymerase [Brucella abortus bv. 9 str. C68]
 gi|297174640|gb|EFH33987.1| error-prone DNA polymerase [Brucella abortus bv. 5 str. B3196]
          Length = 1077

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 251/1046 (23%), Positives = 433/1046 (41%), Gaps = 83/1046 (7%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPII 71
              S++S L GA     ++++  A     I I D N L   +    +       +G +  I
Sbjct: 9    AASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQWKDIRKESGFRLFI 68

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+L                     P +V+       Y +L  L++        K    +
Sbjct: 69   GCRLSFIDG---------------TPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGECHL 113

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHR 190
              + L     +  I +        D A           RL    +     +++ L   H+
Sbjct: 114  EWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTMPHQ 163

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VT 249
            G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R     
Sbjct: 164  GQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLEKN 223

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + +LK   EMV +F D PEA+  T +     +F L       P           K  + 
Sbjct: 224  AERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KTAQQ 279

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L +    G         I         +  ++ EL +IAR+++  YFL V D +  A++
Sbjct: 280  HLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTHARE 334

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A SV  + L IT ++P +  LLF+RF++ +R   PD D+DF  +RR+E
Sbjct: 335  KGIL-CQGRGSAANSVVCFCLGITGVNPTQVDLLFDRFISAERKEPPDIDVDFEHERREE 393

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       +  
Sbjct: 394  VMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGGIDR 453

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+    
Sbjct: 454  QHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIGPAA 509

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD------LSLIPF 603
                   +++   I++ GL+K D L L  LT ++K+ D + Q   ++       L+ +P 
Sbjct: 510  MDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLASLPR 569

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
             D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+  
Sbjct: 570  KDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMVHPY 629

Query: 664  RKNGKEKIVSIHP----------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             +    +     P           +  +L +T+GV ++QEQ M+IA   + ++  EA+ L
Sbjct: 630  LRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEANQL 689

Query: 714  RRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM    K   +   +++ I G    G  +T A N F  +  F +YGF +SHAA++A +
Sbjct: 690  RRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASFAHL 749

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  + +
Sbjct: 750  VYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNILEE 809

Query: 833  N-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +      I G        ++    + P+ ++ED   R+   +L+RR    L  
Sbjct: 810  TPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRL---RLDRRAFTLLAD 865

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            A A       R   L ++  +            ++   +F     +   +    K     
Sbjct: 866  ADAFGSLDIDRRAALWAVRRL----------PNDETLPLFRAAAASELAQEPRTKLPEMA 915

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +S     +         GHPL   +  L   G+           G  +++A +V  +Q+ 
Sbjct: 916  ASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVRQRP 975

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + KG  + ++T  +         +P
Sbjct: 976  GSAKG--VVFLTIEDETGIANIVIWP 999


>gi|99080016|ref|YP_612170.1| DNA polymerase III, alpha subunit [Ruegeria sp. TM1040]
 gi|99036296|gb|ABF62908.1| DNA polymerase III alpha subunit [Ruegeria sp. TM1040]
          Length = 1126

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 274/1061 (25%), Positives = 441/1061 (41%), Gaps = 86/1061 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC----- 63
            P +  L V S+++ L GA     ++ + A     AIAITD N+L   +            
Sbjct: 25   PGYAELCVTSNFTFLTGASHPEELVTRAAELGLAAIAITDRNSLAGVVRAWSALKELRRE 84

Query: 64   -AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP---------SIVL---------LVS 104
              AGIQ  I     +D     K+        P  P          +VL         L  
Sbjct: 85   AEAGIQ--IRSHQRVDPSSRQKIDTSAPLEPPAAPTLPKLIVGCRLVLRDSQTDWIALPR 142

Query: 105  TAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEG-LIMLTGGSSGPIDRAFFFNS 163
                Y RL  L++        K    +    L        LI L              + 
Sbjct: 143  DRAAYARLTRLLTLGKRR-APKGECHLDARDLMAACRGMSLIALP------------QSD 189

Query: 164  SQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
             + A   +   ++ F   +++    R+ G D+   +     A     P+VA  + L    
Sbjct: 190  LKTAIPEIRRMQQCFPHYVFLGAAPRYDGSDQAYLAACAHAAQITSAPMVAVGDVLMHRA 249

Query: 223  EDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
                  DVL  +    T+     R     +  LK  ++M  +F   P AL  T+EIA +C
Sbjct: 250  SRRPLADVLTCMREHITIDEIGSRALPNSERRLKAGADMARLFQAHPAALRRTLEIADKC 309

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            SF L   +   P  I        +  +  L   A  GL  R   G        Q     +
Sbjct: 310  SFDLGELSYDYPHEIVD-----GETPQARLERLAAEGLRRRYPDG------PTQKAVVLM 358

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            D EL ++A + F+ YFL V D +Q+AK  NI    GRGS A S+  Y L ITD+ P   +
Sbjct: 359  DKELKLVAELGFAAYFLTVHDIVQYAKSQNIL-CQGRGSAANSILCYLLGITDVSPDMIT 417

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            ++FERF++  R   PD D+DF  +RR+EVI+++  KYG +R     T    +++AA+R+V
Sbjct: 418  MVFERFVSRYRGEPPDIDVDFEHERREEVIQWIYQKYGRDRAGLCATVIHFRSRAAIREV 477

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
            G+ + +       L   I       V L+ I +        + D  + + + +  ++ G 
Sbjct: 478  GKVMGLSQDVTAGLSGQIWGMSNGGVDLKRIEE----LGLDIQDRRLMQTIRLIGEIIGF 533

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             RH S H  G VI    L +L P+      D  V +++   I+  G++K D L L  LT 
Sbjct: 534  PRHLSQHVGGFVITKGRLDELAPIENAAMEDRTVIEWDKDDIDALGILKVDVLSLGMLTC 593

Query: 582  LQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            LQKS   L     +   +  +P +D +TY +L     +G+FQ+ES      L  MQP   
Sbjct: 594  LQKSFALLKAHEGETLSIGTVPQEDAKTYAMLCRADAVGVFQVESRAQMNFLPRMQPREF 653

Query: 641  EDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
             D++  V++ RPGPI   +   Y  R+NG E+     P ++ + K T GV ++QEQ MQI
Sbjct: 654  YDLVIEVAIVRPGPIQGDMVQPYIRRRNGLEEPEPFGPELEQVTKRTLGVPLFQEQAMQI 713

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            A + +G++  EAD LRR++    +   +   +++FI+G    G S+ +A   F  +  FA
Sbjct: 714  AVVGAGFTPEEADHLRRSLASFRRMGTIGTFRDKFINGMLDKGYSQEVAARCFSQIEGFA 773

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            DYGF +SHAAA+A+++Y +AW+K H+P  F  A +  +        +  +DAR+  ++I 
Sbjct: 774  DYGFPESHAAAFAMLAYVSAWLKCHHPAVFACALLNSQPMGFYAPAQIVRDAREHGVEIR 833

Query: 818  PPSVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            P  VN    D ++         +      IKG     A  I  A  +  +   E    R 
Sbjct: 834  PICVNASDWDNQLERRPDGALALRLGFRQIKGFREEDAGWITAARGNG-YPDPESLWLRA 892

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
              +     VL  L  A A    G +R   L  +  I          R+ K   +F     
Sbjct: 893  GLRP---DVLTRLAEADAFSDMGLTRRDALWQVKAI----------RSAKPLPLFDDPID 939

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
              S         V +       +          HP+++ +P L   G+  +   +    G
Sbjct: 940  GESISEPAVDLPVMHLGEEVVEDYISTRLTLRAHPMELLRPALP--GLTPHAALLDAPLG 997

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +  +  +V+++Q+  T  G  + ++T  +         +P
Sbjct: 998  RH-TVCGLVITRQRPGTASG--VIFLTLEDETGVSNVVVWP 1035


>gi|254696496|ref|ZP_05158324.1| error-prone DNA polymerase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260760873|ref|ZP_05873216.1| error-prone DNA polymerase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260671305|gb|EEX58126.1| error-prone DNA polymerase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 1077

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 252/1046 (24%), Positives = 433/1046 (41%), Gaps = 83/1046 (7%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPII 71
              S++S L GA     ++++  A     I I D N L   +    +       +G +  I
Sbjct: 9    AASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQWKNIRKESGFRLFI 68

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+L                     P +V+       Y +L  L++        K    +
Sbjct: 69   GCRLSFIDG---------------TPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGECHL 113

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHR 190
              + L     +  I +        D A           RL    +     +++ L   H+
Sbjct: 114  EWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTMPHQ 163

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VT 249
            G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R     
Sbjct: 164  GQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLEKN 223

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + +LK   EMV +F D PEA+  T +     +F L       P           K  + 
Sbjct: 224  AERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KTAQQ 279

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L +    G         I         +  ++ EL +IAR+++  YFL V D +  A++
Sbjct: 280  HLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTHARE 334

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +RR+E
Sbjct: 335  KGIL-CQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHERREE 393

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       +  
Sbjct: 394  VMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGGIDR 453

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+    
Sbjct: 454  QHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIGPAA 509

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD------LSLIPF 603
                   +++   I++ GL+K D L L  LT ++K+ D + Q   ++       L+ +P 
Sbjct: 510  MDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLASLPR 569

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
             D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+  
Sbjct: 570  KDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMVHPY 629

Query: 664  RKNGKEKIVSIHP----------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             +    +     P           +  +L +T+GV ++QEQ M+IA   + ++  EA+ L
Sbjct: 630  LRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEANQL 689

Query: 714  RRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM    K   +   +++ I G    G  +T A N F  +  F +YGF +SHAA++A +
Sbjct: 690  RRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASFAHL 749

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  + +
Sbjct: 750  VYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNILEE 809

Query: 833  N-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +      I G        ++    + P+ ++ED   R+   +L+RR    L  
Sbjct: 810  TPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRL---RLDRRAFTLLAD 865

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            A A       R   L ++  +            ++   +F     +   +    K     
Sbjct: 866  ADAFGSLDIDRRAALWAVRRL----------PNDETLPLFRAAAASELAQEPRTKLPEMA 915

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +S     +         GHPL   +  L   G+           G  +++A +V  +Q+ 
Sbjct: 916  ASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVRQRP 975

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + KG  + ++T  +         +P
Sbjct: 976  GSAKG--VVFLTIEDETGIANIVIWP 999


>gi|62289055|ref|YP_220848.1| error-prone DNA polymerase [Brucella abortus bv. 1 str. 9-941]
 gi|82698992|ref|YP_413566.1| error-prone DNA polymerase [Brucella melitensis biovar Abortus 2308]
 gi|254694867|ref|ZP_05156695.1| error-prone DNA polymerase [Brucella abortus bv. 3 str. Tulya]
 gi|254731409|ref|ZP_05189987.1| error-prone DNA polymerase [Brucella abortus bv. 4 str. 292]
 gi|260546348|ref|ZP_05822088.1| error-prone DNA polymerase [Brucella abortus NCTC 8038]
 gi|260759149|ref|ZP_05871497.1| error-prone DNA polymerase [Brucella abortus bv. 4 str. 292]
 gi|261215200|ref|ZP_05929481.1| error-prone DNA polymerase [Brucella abortus bv. 3 str. Tulya]
 gi|71151817|sp|Q57FU7|DNAE2_BRUAB RecName: Full=Error-prone DNA polymerase
 gi|62195187|gb|AAX73487.1| DnaE-1, DNA polymerase III, alpha subunit [Brucella abortus bv. 1
            str. 9-941]
 gi|82615093|emb|CAJ10022.1| Immunoglobulin/major histocompatibility complex:Phosphoesterase PHP,
            N-terminal:DNA polymerase III alpha subunit [Brucella
            melitensis biovar Abortus 2308]
 gi|260096455|gb|EEW80331.1| error-prone DNA polymerase [Brucella abortus NCTC 8038]
 gi|260669467|gb|EEX56407.1| error-prone DNA polymerase [Brucella abortus bv. 4 str. 292]
 gi|260916807|gb|EEX83668.1| error-prone DNA polymerase [Brucella abortus bv. 3 str. Tulya]
          Length = 1077

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 252/1046 (24%), Positives = 433/1046 (41%), Gaps = 83/1046 (7%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPII 71
              S++S L GA     ++++  A     I I D N L   +    +       +G +  I
Sbjct: 9    AASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQWKDIRKESGFRLFI 68

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+L                     P +V+       Y +L  L++        K    +
Sbjct: 69   GCRLSFIDG---------------TPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGECHL 113

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHR 190
              + L     +  I +        D A           RL    +     +++ L   H+
Sbjct: 114  EWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTMPHQ 163

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VT 249
            G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R     
Sbjct: 164  GQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLEKN 223

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + +LK   EMV +F D PEA+  T +     +F L       P           K  + 
Sbjct: 224  AERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KTAQQ 279

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L +    G         I         +  ++ EL +IAR+++  YFL V D +  A++
Sbjct: 280  HLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTHARE 334

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +RR+E
Sbjct: 335  KGIL-CQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHERREE 393

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       +  
Sbjct: 394  VMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGGIDR 453

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+    
Sbjct: 454  QHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIGPAA 509

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD------LSLIPF 603
                   +++   I++ GL+K D L L  LT ++K+ D + Q   ++       L+ +P 
Sbjct: 510  MDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLASLPR 569

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
             D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+  
Sbjct: 570  KDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMVHPY 629

Query: 664  RKNGKEKIVSIHP----------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             +    +     P           +  +L +T+GV ++QEQ M+IA   + ++  EA+ L
Sbjct: 630  LRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEANQL 689

Query: 714  RRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM    K   +   +++ I G    G  +T A N F  +  F +YGF +SHAA++A +
Sbjct: 690  RRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASFAHL 749

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  + +
Sbjct: 750  VYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNILEE 809

Query: 833  N-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +      I G        ++    + P+ ++ED   R+   +L+RR    L  
Sbjct: 810  TPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRL---RLDRRAFTLLAD 865

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            A A       R   L ++  +            ++   +F     +   +    K     
Sbjct: 866  ADAFGSLDIDRRAALWAVRRL----------PNDETLPLFRAAAASELAQEPRTKLPEMA 915

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +S     +         GHPL   +  L   G+           G  +++A +V  +Q+ 
Sbjct: 916  ASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVRQRP 975

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + KG  + ++T  +         +P
Sbjct: 976  GSAKG--VVFLTIEDETGIANIVIWP 999


>gi|119386996|ref|YP_918051.1| DNA polymerase III, alpha subunit [Paracoccus denitrificans PD1222]
 gi|119377591|gb|ABL72355.1| error-prone DNA polymerase, DnaE-like protein [Paracoccus
            denitrificans PD1222]
          Length = 1077

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 252/1050 (24%), Positives = 433/1050 (41%), Gaps = 89/1050 (8%)

Query: 6    EKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
               P  +V L V S++S L GA     +          A+ I D N+L   +     A  
Sbjct: 18   PNPPADYVELAVTSAFSFLHGASHPRELALAAHLMGYDALGIADLNSLAGVVRLHATAKK 77

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD- 123
              ++P+IG ++ +                      +   +    Y RL  L+++    D 
Sbjct: 78   LHLRPVIGARIVLADGTAF----------------LAYPTDRAAYGRLASLITKGRRHDL 121

Query: 124  ----QGKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
                Q K    + L+ L     +G  LI L G    P+         Q++          
Sbjct: 122  AGNWQKKGRCDLNLADLA-THAQGMRLIWLPGDDLSPLPDLALR-LPQLSHVAASWL--- 176

Query: 178  FGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
                       +RG DR R +++ + A    L +VA N+  + + +     DV+  +   
Sbjct: 177  -----------YRGDDRARINRLDRAAQAAGLSIVAVNDVHYHAPDRRPLQDVMTCIREG 225

Query: 238  TVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
            T +++         + +LK  +EMV +F+D P A+  T EIA  C F L       PR  
Sbjct: 226  TTIARAGLLLAQNAERHLKPPAEMVRLFADWPHAIRATREIADSCRFSLDELQYEYPRES 285

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                       +  L N    G + R   G           R  L  EL +I   K + Y
Sbjct: 286  VPPG----LTPQQHLENLTWQGADWRYPAGV------PDKVRATLIKELALIREKKIAQY 335

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL + D +++A+   I    GRGS A S   Y L IT +DP +  LLFERF++ +R   P
Sbjct: 336  FLTIHDIVRFAEDRAIL-HQGRGSAANSAVCYVLGITPVDPAKHELLFERFISQNRKEPP 394

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  +RR+EVI+++ ++Y  +R     T    + ++A+R+VG+ + +       L 
Sbjct: 395  DIDVDFEHERREEVIQHIYDRYRRDRAGLCATVIHYRPRSAIREVGKVMGLSEDVTSALA 454

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
              +       +S    A D+      L DP + R + +++++ G+ RH S H  G V+ +
Sbjct: 455  DTVWGSWGKDMS----AADTMQAGLDLGDPLLRRTVRLAEEMIGMPRHLSQHVGGFVLTE 510

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
             PLS+ VP+      D    +++   I++  ++K D L L  LT ++K    +     KV
Sbjct: 511  GPLSETVPIGNAAMPDRSFIEWDKDDIDELHILKVDVLALGMLTCIRKCFALIKAHYGKV 570

Query: 597  -DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              LS    DD  TY +L    ++G FQ+ES      L  ++P    D++  V++ RPGPI
Sbjct: 571  LTLSDFDHDDQPTYKMLQRGDSIGTFQVESRAQMAMLPRLKPKRFYDLVIQVAIVRPGPI 630

Query: 656  DNIVVYN--------NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
               +V+            +           +  +L  T+GV I+QEQ M+IA + + ++ 
Sbjct: 631  QGNMVHPYLRRRAGLETVDFPGPRDGDPDELKNILFRTEGVPIFQEQAMKIAMVAAEFTP 690

Query: 708  SEADVLRRAMGKKI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            +E D LR+AM     +  + + ++R +    + G ++  A   F  +  F DYGF +SHA
Sbjct: 691  NEVDDLRKAMATFRSRGTIGQLQDRMVGKMVERGYTRDFAERCFNQIKGFGDYGFPESHA 750

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AA+A ++Y +AW+K H+P  F AA +  +        +  +DAR   + ++P  VN    
Sbjct: 751  AAFAHLAYVSAWLKCHHPAAFAAALLNSQPMGFYAPAQIVRDARDHGVTVLPADVNISEW 810

Query: 827  DFKVGD----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
            D  +        +   L  I G+    A  I +A  + P+  L D  +R     L+ R +
Sbjct: 811  DNTLEPCDGTFALRLGLRQIDGLPEALAERIKQARHE-PYADLADLKTRA---GLDARAI 866

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
              +  A  L   G  R   L     ++   +            +F          +TL  
Sbjct: 867  RLIAAADGLRSMGLDRRAGLWQARALRDAPE----------LPLFGRRDEGPEPAVTLPA 916

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
              +         + + L      HP+   +  L   G        A    + +R+A +V+
Sbjct: 917  MPLY---EHVTADYQTLRLSLKAHPMRFLRRSLTAQGYVPAAGLAALSNRSRLRMAGIVL 973

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +Q+  +  G+   +VT  +         +
Sbjct: 974  VRQRPGSANGT--CFVTLEDETGVANLVVW 1001


>gi|228475228|ref|ZP_04059954.1| DNA polymerase III subunit alpha [Staphylococcus hominis SK119]
 gi|228270839|gb|EEK12241.1| DNA polymerase III subunit alpha [Staphylococcus hominis SK119]
          Length = 1067

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 332/1025 (32%), Positives = 532/1025 (51%), Gaps = 79/1025 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL +HS+Y LL  +L +N+++ K  A+   A+AITDTN L+   +F       GI+PI
Sbjct: 2    FVHLNIHSTYDLLYSSLKINDVVSKAKANGYQALAITDTNVLYGFPKFYDACVNEGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  + +  + +   T             +L     EG   L +L S + +    KQ   
Sbjct: 62   FGMTVMVSDEISTIET-------------ILFAKNNEGLHALYQLSSAINM----KQKTT 104

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L WLQ+      I+    ++               +  + T K    + +++    H 
Sbjct: 105  IPLKWLQKYSYHLAIVFKDANASH-------------QSLIQTLKN--NESVFI---NHT 146

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                      +  +      +V  NN+ +L+ ED +    L A+ ++T +   +  +   
Sbjct: 147  SQ--------LDFSDD---KIVFLNNARYLNPEDADTILALKAIKNNTKLDLVNDIKDAH 195

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            +++  + +      S+   A  NT  +A  C+  +Q H  +LP F        Q+  ++ 
Sbjct: 196  EYFPTSENIKELQLSEKIIA--NTKALADECNAEIQYHQNLLPNFKTPN----QQSAKSY 249

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L  K    L+              Q Y  RL  E ++I  M F  YFLIV+D I +AK +
Sbjct: 250  LLEKLKYNLKEFKLD-------KNQRYIDRLHHEYSIITNMGFEDYFLIVSDLIHFAKTH 302

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            ++ VGPGRGS AGS+ +Y L IT IDP++F LLFERFLNP+R++MPD DIDF   RR++V
Sbjct: 303  DVMVGPGRGSSAGSLVSYLLGITTIDPIKFDLLFERFLNPERVTMPDIDIDFEDTRREKV 362

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +   
Sbjct: 363  IQYVQEKYGQYHVSGIVTFGHLLARAVARDVGRIIGFDEKTLNEISNLIPHQLGITLEEA 422

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                + +F+         ++  EIS+KLEGL RH STHAAGI+I D+PL    P+     
Sbjct: 423  Y--QNEKFKAFVHKSYRHEKWFEISKKLEGLPRHTSTHAAGIIINDKPLYHFAPLTMGDT 480

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
                +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  +PF+D + +
Sbjct: 481  G--ILTQWTMTEAERLGLLKIDFLGLRNLSIIHQIITQVKKDLNIDIDIERLPFNDQKVF 538

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL+   T GIFQLES G+R+ L  +QP+  EDI+A+ SLYRPGP+  I  Y +R++ + 
Sbjct: 539  KLLSLGNTTGIFQLESEGVRKVLMELQPEHFEDIVAVTSLYRPGPMQEIPTYISRRHRQS 598

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I  +HP ++P+LK+T GVIIYQEQ+MQIA   + +S  +AD+LRRAM KK +  ++ ++
Sbjct: 599  DIKYLHPDLEPILKKTYGVIIYQEQIMQIASQFANFSYGQADILRRAMSKKNRAILESER 658

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI GA  N    +I+  IFEL+ KFADYGF ++HA +Y+ I+Y  A++K HYP  F A
Sbjct: 659  QHFIEGAVSNNYDASISERIFELILKFADYGFPRAHAVSYSKIAYIMAYLKVHYPNYFYA 718

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              ++  + N  K     ++A+  ++ I+PP +N     +K  +  IY SL AIKGVG  +
Sbjct: 719  NILSNVIGNETKTAIIIEEAKTQSLNILPPDINKSHWFYKATEKNIYLSLGAIKGVGYQS 778

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++    +  +    DF  R+  +   R++LE+L+  GA D FG +R  LL ++D +
Sbjct: 779  VKSIVDERIENGLYKDFFDFTRRIPKRIKTRKLLEALICVGAFDSFGKTRSTLLSTIDEV 838

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                  VE++       +F       + K + E     +  +    E+  LGFY S HP+
Sbjct: 839  IDQVSNVEQDEF-----LF----NMLTPKQSYEDKEEFSDQIISAYEKEYLGFYISNHPV 889

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            +    I + +GI   + S+         +   V   +Q +T+ G  + ++   +     +
Sbjct: 890  EKLFYIKQYLGIFTIKNSLDYQP-----ILVQVNQFKQIRTKTGQHMAFLVLDDGRTTID 944

Query: 1029 ANFFP 1033
               FP
Sbjct: 945  GVLFP 949


>gi|254700882|ref|ZP_05162710.1| error-prone DNA polymerase [Brucella suis bv. 5 str. 513]
 gi|254707232|ref|ZP_05169060.1| error-prone DNA polymerase [Brucella pinnipedialis M163/99/10]
 gi|254709225|ref|ZP_05171036.1| error-prone DNA polymerase [Brucella pinnipedialis B2/94]
 gi|254713353|ref|ZP_05175164.1| error-prone DNA polymerase [Brucella ceti M644/93/1]
 gi|256030748|ref|ZP_05444362.1| error-prone DNA polymerase [Brucella pinnipedialis M292/94/1]
 gi|261314714|ref|ZP_05953911.1| error-prone DNA polymerase [Brucella pinnipedialis M163/99/10]
 gi|261316728|ref|ZP_05955925.1| DNA polymerase III alpha subunit [Brucella pinnipedialis B2/94]
 gi|261321081|ref|ZP_05960278.1| error-prone DNA polymerase [Brucella ceti M644/93/1]
 gi|261751394|ref|ZP_05995103.1| error-prone DNA polymerase [Brucella suis bv. 5 str. 513]
 gi|265987799|ref|ZP_06100356.1| error-prone DNA polymerase [Brucella pinnipedialis M292/94/1]
 gi|261293771|gb|EEX97267.1| error-prone DNA polymerase [Brucella ceti M644/93/1]
 gi|261295951|gb|EEX99447.1| DNA polymerase III alpha subunit [Brucella pinnipedialis B2/94]
 gi|261303740|gb|EEY07237.1| error-prone DNA polymerase [Brucella pinnipedialis M163/99/10]
 gi|261741147|gb|EEY29073.1| error-prone DNA polymerase [Brucella suis bv. 5 str. 513]
 gi|264659996|gb|EEZ30257.1| error-prone DNA polymerase [Brucella pinnipedialis M292/94/1]
          Length = 1077

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 252/1046 (24%), Positives = 434/1046 (41%), Gaps = 83/1046 (7%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPII 71
              S++S L GA     ++++  A     I I D N L   +    +       +G +  I
Sbjct: 9    AASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQWKDIRKESGFRLFI 68

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+L                     P +V+       Y +L  L++        K    +
Sbjct: 69   GCRLSFIDG---------------TPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGECHL 113

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHR 190
              + L     +  I +        D A           RL    +     +++ L   H+
Sbjct: 114  EWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTMPHQ 163

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VT 249
            G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R     
Sbjct: 164  GQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLEKN 223

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + +LK   EMV +F D PEA+  T +     +F L       P           K  + 
Sbjct: 224  AERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KTAQQ 279

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L +    G         I         +  ++ EL +IAR+++  YFL V D +  A++
Sbjct: 280  HLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTHARE 334

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +RR+E
Sbjct: 335  KGIL-CQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHERREE 393

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       +  
Sbjct: 394  VMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGGIDR 453

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+    
Sbjct: 454  QHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIGPAA 509

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD------LSLIPF 603
                   +++   I++ GL+K D L L  LT ++K+ D + Q   ++       L+ +P 
Sbjct: 510  MDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLASLPR 569

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+  
Sbjct: 570  EDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMVHPY 629

Query: 664  RKNGKEKIVSIHP----------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             +    +     P           +  +L +T+GV ++QEQ M+IA   + ++  EA+ L
Sbjct: 630  LRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEANQL 689

Query: 714  RRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM    K   +   +++ I G    G  +T A N F  +  F +YGF +SHAA++A +
Sbjct: 690  RRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASFAHL 749

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  + +
Sbjct: 750  VYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNILEE 809

Query: 833  N-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +      I G        ++    + P+ ++ED   R+   +L+RR    L  
Sbjct: 810  TPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRL---RLDRRAFTLLAD 865

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            A A       R   L ++  +            ++   +F     +   +    K     
Sbjct: 866  ADAFGSLDIDRRAALWAVRRL----------PNDETLPLFRAAAASELAQEPRTKLPEMA 915

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +S     +         GHPL   +  L   G+           G  +++A +V  +Q+ 
Sbjct: 916  ASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVRQRP 975

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + KG  + ++T  +         +P
Sbjct: 976  GSAKG--VVFLTIEDETGIANIVIWP 999


>gi|254512034|ref|ZP_05124101.1| putative DNA polymerase III alpha subunit subfamily [Rhodobacteraceae
            bacterium KLH11]
 gi|221535745|gb|EEE38733.1| putative DNA polymerase III alpha subunit subfamily [Rhodobacteraceae
            bacterium KLH11]
          Length = 1127

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 259/1058 (24%), Positives = 433/1058 (40%), Gaps = 84/1058 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------A 64
            +  L V ++++ L GA     ++ + A     AIAITD N+L   +              
Sbjct: 28   YAELCVTTNFTFLTGASHPEELVTRAAELGLKAIAITDRNSLAGVVRAWVAMKELRREAE 87

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI------------------VLLVSTA 106
              +   I  Q  +D     ++ +      P  P +                  + L    
Sbjct: 88   NAVP--IRSQHRMDSCSRQEIGHPQPISKPDAPRLPQLIVGCRLVLRDSSVDWLALPRDR 145

Query: 107  EGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
              Y RL  L++       GK    + L  L            G   G I  A      + 
Sbjct: 146  PAYARLTRLLTLGKRR-AGKGECHLDLQDLL-----------GACQGMILIALPQAGLEQ 193

Query: 167  AEKRLLTFKKLFGDRLYVN-LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
            A   +   ++ F + +++  + R+ G D+   +   Q A     P+VA  + L       
Sbjct: 194  AIPDIQRIRRRFPNAVFLGAVPRYDGSDQAYLAACAQTAQKASAPMVAVGDVLMHRASRR 253

Query: 226  EAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
            +  DVL  +    T+           +  LK  ++M  +F D P AL  T+EIA RCSF 
Sbjct: 254  QLADVLTCMREHITIDQIGTHALPNAERRLKGYADMARLFQDHPGALRRTLEIADRCSFD 313

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            L   +         +    ++  +  L   A AGL+ R   G        +     +  E
Sbjct: 314  LSELSYEY-----PDEIASEETPQARLERLARAGLKRRYPGG------PPERALNLMQKE 362

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L ++A + F  YFL V D +Q+A+   I    GRGS A S+  Y L ITD+ P   +++F
Sbjct: 363  LALVADLDFPAYFLTVHDIVQFARSQGIL-CQGRGSAANSILCYLLGITDVSPDMIAMVF 421

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERF++  R   PD D+DF  +RR+EVI+++  KYG  R     T    +++AA+R+VG+ 
Sbjct: 422  ERFVSKYRGEPPDIDVDFEHERREEVIQWIYQKYGRHRAGLCATVTHFRSRAAIREVGKV 481

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            + +     D    L                             +  +  I + + G  RH
Sbjct: 482  MGLS---QDVTAGLSGQIWGMTNGGVDPERLQELGLNLEDRRLMQTIRLIGE-IIGFPRH 537

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
             S H  G VI    L +L P+      D  V +++   I+  G++K D LGL  L+ ++K
Sbjct: 538  LSQHVGGFVITRGRLDELSPIENAAMEDRTVIEWDKDDIDALGILKVDVLGLGMLSCVRK 597

Query: 585  SLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            + D + Q   +   ++ +P  D  TY +L     +G+FQ+ES      L  M+P    D+
Sbjct: 598  AFDLMQQHEGETLSIATVPQGDEATYDMLCAADAVGVFQVESRAQMNFLPRMRPREFYDL 657

Query: 644  IALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +  V++ RPGPI   +   Y  R++G EK     P ++ + + T GV ++QEQ MQIA +
Sbjct: 658  VIEVAIVRPGPIQGDMVRPYIRRRHGLEKPEPFGPKLEKVTERTLGVPLFQEQAMQIAVV 717

Query: 702  LSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
             +G++  EAD LRR++    +   +   +++FISG  KNG    IA   F  +  FADYG
Sbjct: 718  GAGFTAEEADHLRRSLASFRRMGTIGTFEDKFISGMLKNGYEPEIAKRCFSQIEGFADYG 777

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            F +SHAAA+A+++Y +AW+K H+P  F  A +  +        +  +DAR+  ++I P  
Sbjct: 778  FPESHAAAFAMLAYVSAWLKCHHPAIFACALLNSQPMGFYAPAQIVRDAREHGVEIRPVC 837

Query: 821  VNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            VN    D  +         +      IKG     A  I+ A  +  +   E    R   +
Sbjct: 838  VNASTWDNLLERRADGVLALRLGFRQIKGFKQEDADWIVAARGNG-YPDPETLWLRAGLR 896

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
                 VL  L  A A      +R   L  +  I          R+     +F       S
Sbjct: 897  P---DVLTRLAEADAFSGMDLTRRDALWHVKAI----------RSQTPLPLFNDPIDGES 943

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
                     V +       +          HP+++ +P +   G+  +        G + 
Sbjct: 944  ISEPQVNLPVMHLGEEVVEDYVSTRLTLRSHPMELLRPSIP--GLVPHAALQDIPLGRH- 1000

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +  +V+++Q+  T  G  + ++T  +         +P
Sbjct: 1001 SVCGLVITRQRPGTASG--VIFLTLEDETGVSNVVVWP 1036


>gi|256368535|ref|YP_003106041.1| DNA polymerase III subunit alpha [Brucella microti CCM 4915]
 gi|255998693|gb|ACU47092.1| DNA polymerase III subunit alpha [Brucella microti CCM 4915]
          Length = 1077

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 252/1046 (24%), Positives = 434/1046 (41%), Gaps = 83/1046 (7%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPII 71
              S++S L GA     ++++  A     I I D N L   +    +       +G +  I
Sbjct: 9    AASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQWKDIRKESGFRLFI 68

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+L                     P +V+       Y +L  L++        K    +
Sbjct: 69   GCRLSFIDG---------------TPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGECHL 113

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHR 190
              + L     +  I +        D A           RL    +     +++ L   H+
Sbjct: 114  EWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTMPHQ 163

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VT 249
            G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R     
Sbjct: 164  GQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLEKN 223

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + +LK   EMV +F D PEA+  T +     +F L       P           K  + 
Sbjct: 224  AERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KTAQQ 279

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L +    G         I         +  ++ EL +IAR+++  YFL V D +  A++
Sbjct: 280  HLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTHARE 334

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +RR+E
Sbjct: 335  KGIL-CQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHERREE 393

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       +  
Sbjct: 394  VMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGGIDR 453

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+    
Sbjct: 454  QHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIGPAA 509

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD------LSLIPF 603
                   +++   I++ GL+K D L L  LT ++K+ D + Q   ++       L+ +P 
Sbjct: 510  MDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLASLPR 569

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+  
Sbjct: 570  EDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMVHPY 629

Query: 664  RKNGKEKIVSIHP----------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             +    +     P           +  +L +T+GV ++QEQ M+IA   + ++  EA+ L
Sbjct: 630  LRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEANQL 689

Query: 714  RRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM    K   +   +++ I G    G  +T A N F  +  F +YGF +SHAA++A +
Sbjct: 690  RRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQINGFGEYGFPESHAASFAHL 749

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  + +
Sbjct: 750  VYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNILEE 809

Query: 833  N-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +      I G        ++    + P+ ++ED   R+   +L+RR    L  
Sbjct: 810  TPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRL---RLDRRAFTLLAD 865

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            A A       R   L ++  +            ++   +F     +   +    K     
Sbjct: 866  ADAFGSLDIDRRAALWAVRRL----------PNDETLPLFRAAAASELAQEPRTKLPEMA 915

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +S     +         GHPL   +  L   G+           G  +++A +V  +Q+ 
Sbjct: 916  ASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVRQRP 975

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + KG  + ++T  +         +P
Sbjct: 976  GSAKG--VVFLTIEDETGIANIVIWP 999


>gi|237814543|ref|ZP_04593541.1| DNA polymerase III, alpha subunit [Brucella abortus str. 2308 A]
 gi|237789380|gb|EEP63590.1| DNA polymerase III, alpha subunit [Brucella abortus str. 2308 A]
          Length = 1078

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 252/1046 (24%), Positives = 433/1046 (41%), Gaps = 83/1046 (7%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPII 71
              S++S L GA     ++++  A     I I D N L   +    +       +G +  I
Sbjct: 10   AASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQWKDIRKESGFRLFI 69

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+L                     P +V+       Y +L  L++        K    +
Sbjct: 70   GCRLSFIDG---------------TPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGECHL 114

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHR 190
              + L     +  I +        D A           RL    +     +++ L   H+
Sbjct: 115  EWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTMPHQ 164

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VT 249
            G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R     
Sbjct: 165  GQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLEKN 224

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + +LK   EMV +F D PEA+  T +     +F L       P           K  + 
Sbjct: 225  AERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KTAQQ 280

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L +    G         I         +  ++ EL +IAR+++  YFL V D +  A++
Sbjct: 281  HLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTHARE 335

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +RR+E
Sbjct: 336  KGIL-CQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHERREE 394

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       +  
Sbjct: 395  VMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGGIDR 454

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+    
Sbjct: 455  QHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIGPAA 510

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD------LSLIPF 603
                   +++   I++ GL+K D L L  LT ++K+ D + Q   ++       L+ +P 
Sbjct: 511  MDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLASLPR 570

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
             D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+  
Sbjct: 571  KDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMVHPY 630

Query: 664  RKNGKEKIVSIHP----------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             +    +     P           +  +L +T+GV ++QEQ M+IA   + ++  EA+ L
Sbjct: 631  LRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEANQL 690

Query: 714  RRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM    K   +   +++ I G    G  +T A N F  +  F +YGF +SHAA++A +
Sbjct: 691  RRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASFAHL 750

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  + +
Sbjct: 751  VYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNILEE 810

Query: 833  N-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +      I G        ++    + P+ ++ED   R+   +L+RR    L  
Sbjct: 811  TPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRL---RLDRRAFTLLAD 866

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            A A       R   L ++  +            ++   +F     +   +    K     
Sbjct: 867  ADAFGSLDIDRRAALWAVRRL----------PNDETLPLFRAAAASELAQEPRTKLPEMA 916

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +S     +         GHPL   +  L   G+           G  +++A +V  +Q+ 
Sbjct: 917  ASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVRQRP 976

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + KG  + ++T  +         +P
Sbjct: 977  GSAKG--VVFLTIEDETGIANIVIWP 1000


>gi|23500984|ref|NP_697111.1| error-prone DNA polymerase [Brucella suis 1330]
 gi|71151819|sp|Q8G381|DNAE2_BRUSU RecName: Full=Error-prone DNA polymerase
 gi|23346843|gb|AAN29026.1| DNA polymerase III, alpha subunit [Brucella suis 1330]
          Length = 1077

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 252/1046 (24%), Positives = 434/1046 (41%), Gaps = 83/1046 (7%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPII 71
              S++S L GA     ++++  A     I I D N L   +    +       +G +  I
Sbjct: 9    AASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQWKDIRKESGFRLFI 68

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+L                     P +V+       Y +L  L++        K    +
Sbjct: 69   GCRLSFIDG---------------TPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGECHL 113

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHR 190
              + L     +  I +        D A           RL    +     +++ L   H+
Sbjct: 114  EWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTMPHQ 163

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VT 249
            G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R     
Sbjct: 164  GQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLEKN 223

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + +LK   EMV +F D PEA+  T +     +F L       P           K  + 
Sbjct: 224  AERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KTAQQ 279

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L +    G         I         +  ++ EL +IAR+++  YFL V D +  A++
Sbjct: 280  HLYDLVWEGAARHYGADII-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTHARE 334

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +RR+E
Sbjct: 335  KGIL-CQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHERREE 393

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       +  
Sbjct: 394  VMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGGIDR 453

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+    
Sbjct: 454  QHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLARDRLDETVPIGPAA 509

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD------LSLIPF 603
                   +++   I++ GL+K D L L  LT ++K+ D + Q   ++       L+ +P 
Sbjct: 510  MDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLASLPR 569

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+  
Sbjct: 570  EDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMVHPY 629

Query: 664  RKNGKEKIVSIHP----------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             +    +     P           +  +L +T+GV ++QEQ M+IA   + ++  EA+ L
Sbjct: 630  LRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEANQL 689

Query: 714  RRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM    K   +   +++ I G    G  +T A N F  +  F +YGF +SHAA++A +
Sbjct: 690  RRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASFAHL 749

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  + +
Sbjct: 750  VYISAWLKCHHPEVFAAALLNSQPMVFYAPAQIVRDAREHGVTVLPVDVNFSQWDNILEE 809

Query: 833  N-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +      I G        ++    + P+ ++ED   R+   +L+RR    L  
Sbjct: 810  TPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRL---RLDRRAFTLLAD 865

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            A A       R   L ++  +            ++   +F     +   +    K     
Sbjct: 866  ADAFGSLDIDRRAALWAVRRL----------PNDETLPLFRAAAASELAQEPRTKLPEMA 915

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +S     +         GHPL   +  L   G+           G  +++A +V  +Q+ 
Sbjct: 916  ASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVRQRP 975

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + KG  + ++T  +         +P
Sbjct: 976  GSAKG--VVFLTIEDETGIANIVIWP 999


>gi|330818376|ref|YP_004362081.1| DNA polymerase III, alpha subunit superfamily protein [Burkholderia
            gladioli BSR3]
 gi|327370769|gb|AEA62125.1| DNA polymerase III, alpha subunit superfamily protein [Burkholderia
            gladioli BSR3]
          Length = 1080

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 261/1060 (24%), Positives = 445/1060 (41%), Gaps = 80/1060 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC----- 63
            P++  L   S++S L GA +   ++++  A     IAITD  +L  A      A      
Sbjct: 8    PAYAELFCRSNFSFLHGASAAEELVERAQALGYRGIAITDECSLAGAPRMHVAAKANAEA 67

Query: 64   ------AAG---------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                   AG         ++ +IG   ++       +   G  P P    +VLL    EG
Sbjct: 68   LLKQWEEAGSDPTSKPEPLRLVIGSYFEVT----ADVVAPGGDPGPGAFGLVLLARNREG 123

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQV 166
            Y  L EL+S   +  + K +  +    L    +E   L  +    +  +        + V
Sbjct: 124  YGNLSELISWRRMASK-KGTYTLTPRMLAAPPSEFAHLRGVPDCFAILVPSY--PVRADV 180

Query: 167  AEKRLLTFKKLFGDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
             + ++  FK +FG++  + L Q  R  D      +   +    +PLVA  +    +    
Sbjct: 181  LDAQVAWFKHVFGEQARLGLVQLGRALDGVYRETIEAASVQRAMPLVALGDVTMHARSCK 240

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
               D++ A+     V +      +       R           EAL  +  +   C F +
Sbjct: 241  PLQDIMTAIRVGQPVGECGYALASNA-EQHLRRLGRIGRLFPAEALAESCRVLGECRFDM 299

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                   P  I  +           L  +   G + R A+         +  R+++ +EL
Sbjct: 300  SKLKYEYPLEIVPDGM----TPTQYLAQETWKGAQERFAK------RIPKSVRRQIKYEL 349

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             +IA M++  +FL V D +++A+   I    GRGS A SV  Y L +T  DP R ++LFE
Sbjct: 350  GLIAEMEYEPFFLTVYDIVKFARSKEIL-CQGRGSAANSVVCYCLRVTAADPGRTTMLFE 408

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RF++ +R   PD D+DF  +RR+EVI+Y+  KY  +R A      + + + ALR+ G+AL
Sbjct: 409  RFISRERGEPPDIDVDFEHERREEVIQYIYEKYTEDRAALAAAVSTYRPRGALRETGKAL 468

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
             +    V+R+ K           L   A            P +    E++ +L G  RH 
Sbjct: 469  GVDLMLVERVAKEHRWFDGRADLLARFASV----GLDPEVPIIQAWAEMASRLLGFPRHL 524

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            S H+ G VI    L++LVP+         V Q++   +E  GL+K D L L  LT L+++
Sbjct: 525  SQHSGGFVISRDKLTRLVPIENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLTALRRA 584

Query: 586  LDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
             DF+   RG ++ +  I   D  TY +++   T+G+FQ+ES      L  ++P    D++
Sbjct: 585  FDFVGEWRGKRIGIDDIREGDKATYDMISNADTVGVFQIESRAQMSMLPRLRPRKYYDLV 644

Query: 645  ALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
              V++ RPGPI    +  Y  R+  KE +  +   + P L+ T GV I+QEQVMQIA + 
Sbjct: 645  IEVAIVRPGPIQGGAVHPYLKRRQNKEDVSYLKDDLKPALERTLGVPIFQEQVMQIAIIA 704

Query: 703  SGYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            +G++  EAD LRRAM     K  ++K +E+ + G ++       A  IFE +  F +YGF
Sbjct: 705  AGFTPGEADELRRAMAAWKRKGNLEKYREKIVKGMAERHYPSEFASQIFEQIKGFGEYGF 764

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             +SHAA++A++ Y ++W+K H P  FLA+ +  +        +  QDA++  + + P  V
Sbjct: 765  PESHAASFAILVYASSWLKCHEPAIFLASLLNSQPMGFYPPAQLVQDAKRHGVTVRPIDV 824

Query: 822  NTPCVDFK----------VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                 D             G   +   ++ + G+G   A  I  A    PF S++D   R
Sbjct: 825  TASNWDASLEPLPDEPPPEGRPAVRLGMSLVAGLGREAALRIEAARQQGPFASVDDLARR 884

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
               ++ +   L +            +R   L             +        ++ A   
Sbjct: 885  ARLERRDLEALAAANAF---ATLAGNRRDALW------------QAVAAAPSRDLLAMAP 929

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                D+    +    + +     + R +G   + HP+ + +  LR   +   +E      
Sbjct: 930  ---IDEPVRPELGAPSEADDIVADYRTIGLTLNRHPVALLREQLRARRLASAQELAQHRN 986

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                R   +V ++Q   T KG+   +VT  +         
Sbjct: 987  RRLARACGIVTARQMPSTAKGTL--FVTLEDETGSVNIIV 1024


>gi|254461480|ref|ZP_05074896.1| DNA polymerase III, alpha subunit subfamily, putative
            [Rhodobacterales bacterium HTCC2083]
 gi|206678069|gb|EDZ42556.1| DNA polymerase III, alpha subunit subfamily, putative
            [Rhodobacteraceae bacterium HTCC2083]
          Length = 1102

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 258/1059 (24%), Positives = 437/1059 (41%), Gaps = 84/1059 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66
            S+  L   S+++ L GA     ++ + A     AIAITD N+L   +             
Sbjct: 2    SYAELATTSNFTFLRGASHPEELVTRAAELGLQAIAITDHNSLAGVVRAYAALKELKRAR 61

Query: 67   ---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI------------------VLLVST 105
               I+  I  +  +D     ++ +Q   P P    +                  + L   
Sbjct: 62   EDTIR--IRSETQLDHSSRQEVGDQQHIPRPQTVHLPKLIVGARLMLRDSHIDWIALPKD 119

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
               Y RL  L++      + K    + L  L E          G  SG I  A      +
Sbjct: 120  RAAYSRLTRLLTLGKRRAE-KGQCHLDLPDLLE----------GC-SGMILIALPRGPLR 167

Query: 166  VAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED 224
                 +   ++ +   +++    R+ G D+   +    LA     P+VA  + L    + 
Sbjct: 168  KTTHDITQMQRRYPSHVFLGAAPRYNGSDQAYLADCAHLALKTSAPMVAVGDPLMHHGKR 227

Query: 225  YEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
             +  DVL  +    T+     R     +  LK  ++M  +F D P AL+ +VEIA RCSF
Sbjct: 228  RQLADVLTCMREHITIDQIGTRALPNAERRLKGHADMSRVFRDHPAALQRSVEIAARCSF 287

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
             L   +         +     +  +  L   A  G+  R   GA       +  + ++  
Sbjct: 288  CLSELSYEY-----PDEISEGEPPQERLTRLAYEGMMRRYPNGA------TEKAKAQIKK 336

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL ++  + F  YFL V D +Q+A+   I    GRGS A S+  Y L IT++ P   +++
Sbjct: 337  ELKLVKALDFPAYFLTVHDIVQFARSQGIL-CQGRGSAANSILCYLLGITEVSPEVITMV 395

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
             ERF++  R   PD D+DF  +RR+EVI+++  KYG  R     T    + + A+R+VG+
Sbjct: 396  VERFVSEARAEPPDIDVDFEHERREEVIQHIYAKYGRHRAGLCATVTHFRTRGAIREVGK 455

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             + +       L   I                               +  I + + G  R
Sbjct: 456  VMGLSEDVTAGLSSQIWGQSDKGADP---ERVRELGLNLEDRRLAQTIRLIGE-IIGFPR 511

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
            H S H  G VI    L +L P+      D  V +++   I+  G++K D LGL  L+ ++
Sbjct: 512  HLSQHVGGFVITKERLDELCPIENAAMEDRTVIEWDKDDIDTLGILKVDILGLGMLSCIR 571

Query: 584  KSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            KS D L +   K   ++ IP +D ETY +L     +G+FQ+ES      L  M P    D
Sbjct: 572  KSFDLLQEHDRKTLSIAAIPQEDPETYDMLCVADAIGVFQVESRAQMNFLPRMLPRKFYD 631

Query: 643  IIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            ++  V++ RPGPI   +V+   NR+ G+E++      ++ +L +T GV ++QEQ MQIA 
Sbjct: 632  LVIEVAIVRPGPIQGGMVHPYINRRQGREEVHFPSKELENVLGKTLGVPLFQEQAMQIAV 691

Query: 701  LLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            + +G+  SEAD LRR++    +   +   K+RFI+G    G  +  A   F  +  F +Y
Sbjct: 692  VAAGFDPSEADQLRRSLATFRRMGTISTFKDRFINGMLARGYDENFAQRCFAQIEGFGEY 751

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GF +SHAAA+A++ Y +AW+K H+P  F  A +  +        +  +DAR+ +I++ P 
Sbjct: 752  GFPESHAAAFAMLVYVSAWLKKHHPAVFACALLNSQPMGFYAPAQIVRDAREHHIEVRPI 811

Query: 820  SVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
             VN    D  +         +      IKG   T A  I+ A  +  +   E    R   
Sbjct: 812  CVNASTWDNTLERRGDGALALRLGFRQIKGFRETDADWIVAARGNG-YRDPEAVWLRA-- 868

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
              +   VLE L  A      G++R   L  +  I          R  +   +F       
Sbjct: 869  -GVAPSVLERLAEADGFSDMGHTRRDALWLVKAI----------RGQQPLPLFNDPIDGE 917

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
            S           +       +   +      HP+++ +P +   G+  +++         
Sbjct: 918  SISEPDVVLPAMHLGEEVVEDYVSMRLTLRAHPMELLRPNIA--GLTSHDKLPDAPLH-R 974

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            I +  +V+++Q+  T  G  + ++T  +         +P
Sbjct: 975  ISVCGLVITRQRPGTASG--VIFLTLEDETGVSNVVVWP 1011


>gi|260169652|ref|ZP_05756463.1| error-prone DNA polymerase [Brucella sp. F5/99]
 gi|261759184|ref|ZP_06002893.1| error-prone DNA polymerase [Brucella sp. F5/99]
 gi|261739168|gb|EEY27164.1| error-prone DNA polymerase [Brucella sp. F5/99]
          Length = 1077

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 252/1046 (24%), Positives = 434/1046 (41%), Gaps = 83/1046 (7%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPII 71
              S++S L GA     ++++  A     I I D N L   +    +       +G +  I
Sbjct: 9    AASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQWKDIRKESGFRLFI 68

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+L                     P +V+       Y +L  L++        K    +
Sbjct: 69   GCRLSFIDG---------------TPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGECHL 113

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHR 190
              + L     +  I +        D A           RL    +     +++ L   H+
Sbjct: 114  EWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTMPHQ 163

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VT 249
            G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R     
Sbjct: 164  GQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLEKN 223

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + +LK   EMV +F D PEA+  T +     +F L       P           K  + 
Sbjct: 224  AERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KTAQQ 279

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L +    G         I         +  ++ EL +IAR+++  YFL V D +  A++
Sbjct: 280  HLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTHARE 334

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +RR+E
Sbjct: 335  KGIL-CQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHERREE 393

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       +  
Sbjct: 394  VMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGGIDR 453

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+    
Sbjct: 454  QHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIGPAA 509

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD------LSLIPF 603
                   +++   I++ GL+K D L L  LT ++K+ D + Q   ++       L+ +P 
Sbjct: 510  MDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLASLPR 569

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+  
Sbjct: 570  EDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMVHPY 629

Query: 664  RKNGKEKIVSIHP----------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             +    +     P           +  +L +T+GV ++QEQ M+IA   + ++  EA+ L
Sbjct: 630  LRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEANQL 689

Query: 714  RRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM    K   +   +++ I G    G  +T A N F  +  F +YGF +SHAA++A +
Sbjct: 690  RRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASFAHL 749

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  + +
Sbjct: 750  VYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNILEE 809

Query: 833  N-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +      I G        ++    + P+ ++ED   R+   +L+RR    L  
Sbjct: 810  TPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRL---RLDRRAFTLLAD 865

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            A A       R   L ++  +            ++   +F     +   +    K     
Sbjct: 866  ADAFGSLDIDRRAALWAVRRL----------PNDETLPLFRAAAASELAQEPRTKLPEMA 915

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +S     +         GHPL   +  L   G+           G  +++A +V  +Q+ 
Sbjct: 916  ASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQKGADGRRMKVAGVVTVRQRP 975

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + KG  + ++T  +         +P
Sbjct: 976  GSAKG--VVFLTIEDETGIANIVIWP 999


>gi|329667461|gb|AEB93409.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii DPC 6026]
          Length = 1038

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 325/1028 (31%), Positives = 526/1028 (51%), Gaps = 45/1028 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V LQ  S ++LLE    + N+ +        AIA+TD N  +  ++F + A   GI+P++
Sbjct: 4    VSLQNLSGFTLLESPTKVKNLAENAKKKGYSAIALTDINITYGLVDFYKAAKDTGIKPLL 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVR 130
            G QL I+          G         ++++    +GY+ ++ L S + L  + G++   
Sbjct: 64   GMQLRIN----------GLIDEANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENI 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR--LYVNLQR 188
            +    L++     +++        + +    N+ ++    L   +        +Y+ +  
Sbjct: 114  LTFENLKKYLGHLILITPSNLHSEL-KMLQTNNPKMGANYLRKLQDSLPSSSSMYLGVYA 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQKDRPR 247
              G   Y    +  LA    LPL A  +  +L+  +      L A+  +T + + +   +
Sbjct: 173  DSGQQEYIN-YIRSLATQFSLPLTAVEDGQYLNRNEQFLRRTLQAIKTNTHLENIEQLAK 231

Query: 248  VTPDHYLKNRSEMVSIFS--DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                HYLKN  E+   +   D+ +AL+N  EI + C+  ++   P LP+F + +      
Sbjct: 232  QAGSHYLKNSEELQVSYRKFDIEDALKNAEEIGKICTAEIKFQDPQLPKFKQNKFP---- 287

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              +  L   A  GL  R              Y++RLD+EL VI  M F  YFLIV D + 
Sbjct: 288  TSKEYLHALAQEGLAKRF------NNQIPAQYQKRLDYELQVINEMGFDDYFLIVWDVMN 341

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A   +I  GPGRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R  MPD D+D   +
Sbjct: 342  FAHSVHITTGPGRGSAAGSLVSYALRITEVDPIEYNLLFERFLNPARQQMPDIDLDIPDN 401

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRDEVI+Y+  KYG    AQI+TFG+L AK  L+DV R   +   +  R    IP+    
Sbjct: 402  RRDEVIKYMFEKYGMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAIPHSKGK 461

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                +A       +     +     L   ++ LE L RH S HAAG+VI D  L+++V +
Sbjct: 462  ITLAEAYQKSKELQLLVNTNELSKILFATAEHLENLPRHYSIHAAGLVITDDSLAEIVGL 521

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                   +PVTQ     +E  GL+K DFLGL+ LT+L   +  L   G+ +D + IP DD
Sbjct: 522  Q-AGPLGIPVTQQTKLNVESLGLLKIDFLGLRNLTILGNIVAALRADGIDIDPNRIPLDD 580

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             ET  L     T  +FQ ES G+++ LE + PD  EDI+A+ +LYRPGPI+NI  + NRK
Sbjct: 581  QETLTLFQRGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPINNIDHFINRK 640

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +GKE++    P +  +L  T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK  + +
Sbjct: 641  HGKERVQYPDPSLKKILGTTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSKKNADVI 700

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             +++ +FI GA K G  K  A  +++ +A+FA+YGFN+SHA AY+ I++  A+ K HYP 
Sbjct: 701  QRERAKFIEGAIKLGRKKETAEKVYDYIAQFANYGFNRSHAVAYSKIAFWLAYFKVHYPG 760

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F  A +   M N  KI ++   A++  I+I+PP++     DF + + +I   L AI+G+
Sbjct: 761  AFYLALLNSNMGNRNKIAQYLMQAQEAGIKILPPNIENSKADFSLENGKILVGLKAIRGL 820

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
             +   + I+E    +P  S+ DF  ++D+  L+   +E+L+ AG  D    +R +LL+  
Sbjct: 821  RSDLLKQILEI--KRPIKSMTDFLWKIDNNLLSADAVENLIKAGTFDRLAPNRNELLKIN 878

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
             ++ +  +    N      ++F     T   K+  EK     ++ +   E   +GF    
Sbjct: 879  KDLVESVKMAGSN-----LSLF----ETLEPKVEEEKMP--TAAEKSAMEVEAMGFSTGI 927

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            +P+   +   RK   K  +   +  +G  +     ++  +   T+KG  + +  FS+ + 
Sbjct: 928  NPIIAVQKYARKFNAKRLQVFESNEQGIAV---GKLMKVKPITTKKGDNMAFAVFSDTSG 984

Query: 1026 EYEANFFP 1033
            E +   FP
Sbjct: 985  EKDFTIFP 992


>gi|218532913|ref|YP_002423729.1| DNA polymerase III subunit alpha [Methylobacterium chloromethanicum
            CM4]
 gi|218525216|gb|ACK85801.1| DNA polymerase III, alpha subunit [Methylobacterium chloromethanicum
            CM4]
          Length = 1071

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 269/1051 (25%), Positives = 444/1051 (42%), Gaps = 80/1051 (7%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +   +        LQV + +S L GA S   +    +    PA+ +TD  +L   +   Q
Sbjct: 1    MQLTMSTP----ELQVTTHFSFLRGASSPEELFSAASLLGIPALGVTDHGSLAGMVRAHQ 56

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A   G++ ++GC+LD+D   +                +++  +    Y RL  L+S   
Sbjct: 57   AAKVTGMRLVVGCRLDLDDLSSP---------------LLVYPTDRAAYGRLCRLLSLGK 101

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 K   R+    L+E   EG   +    +     A   +        L  FK LFG 
Sbjct: 102  AKGG-KGRCRLTWRDLEEW-QEGFFAIL--LAEQPGSALLND--------LARFKGLFGA 149

Query: 181  RLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-T 238
            R    L  R R  D  R   +   A    +P VAT + L+         DV+  +    T
Sbjct: 150  RASCALTRRFRPDDADRLDALAAAARAARVPTVATGDILYHVAGRRRLQDVVTCIRLGLT 209

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +           D +LK  +E   +F+  PEAL    EIA  C F L   A   P    +
Sbjct: 210  IDRAGFAKERHADRFLKPPAETARLFARFPEALARAGEIAAACRFSLDDLAYTYPTESRE 269

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            +        +  L     AG   R   G        +   ++L  EL++I R+ ++ YFL
Sbjct: 270  DG----LSPQERLDVLTWAGAARRYPAGV------PEAVTRQLHHELDLIGRLAYAPYFL 319

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
             V   + +A +  I    GRGS A S   + L IT IDP R +LLFERF++  R   PD 
Sbjct: 320  TVESIVAFANREKIL-CQGRGSAANSAVCFCLGITSIDPTRQNLLFERFVSEARREPPDI 378

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF  +RR+EVI+++   YG  R A        +++ ALR+VG+ + +P      + ++
Sbjct: 379  DVDFEHERREEVIQWIFQTYGRHRSALTAIVSRFRSRGALREVGKVMGLPEDVTGAINRM 438

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
              +  +  V       + R       D  +   L I+++L G  RH S H  G V+    
Sbjct: 439  TWSWSSEGVG----ERELRELNLNPDDRRLRLTLAIARELIGTPRHLSQHPGGFVLTLDR 494

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            L +LVP+     +D  V +++   I+    +K D LGL  L  L+++ D LA+ +    D
Sbjct: 495  LDELVPVEPAAMADRQVIEWDKDDIDALKFMKVDVLGLGMLGCLRRAFDLLAEVKNDPHD 554

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ IP  D  T+ ++    TLG+FQ+ES      L  M+P    D++  V++ RPGPI  
Sbjct: 555  LASIPSKDEPTFAMIRRADTLGVFQIESRAQMAMLPRMKPKEFYDLVIEVAIVRPGPIQG 614

Query: 658  IVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V+    R+ G E++    P +  +L++T GV ++QEQ MQ+A + +G+S +EAD LRR
Sbjct: 615  DMVHPYLRRREGLEEVTYPTPELKAVLEKTLGVPLFQEQAMQVAMVGAGFSATEADELRR 674

Query: 716  AMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +M        + + + R + G   NG ++  A   F+ L  F  YGF +SHAA++A+++Y
Sbjct: 675  SMATFKFTGGVHRFQNRLVEGMVANGYARDFAERTFKQLEGFGSYGFPESHAASFALLAY 734

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-- 832
             ++WMK H+P  F AA +  +        +  +DAR   ++I P  VN    D  +    
Sbjct: 735  ASSWMKCHHPDVFCAALLNAQPMGFYAPAQIVRDARAHGVEIRPLDVNFSQWDCTLESLG 794

Query: 833  -----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +   L    G+       ++ A   +PF SL +   R     +    L  LV 
Sbjct: 795  SGRKLFAVRLGLRLASGLAERDGHRLVAARGGRPFASLPELADRA---GIPAASLTCLVR 851

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-----TLEK 942
            A A    G +R +   ++  ++                +FA        +          
Sbjct: 852  ADAFRSLGLNRREAAWAVKALR-----------PDPLPLFAALSAPIQAEPAQTAEPAVS 900

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                ++      +    G     HPL   +  L  +G +          G  I +A +V+
Sbjct: 901  LPAMSAGGEVVADYCANGLSLRAHPLAFLRETLTTLGARPCAALERVGNGGAIVVAGIVL 960

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +Q+  + KG+   ++T  +          P
Sbjct: 961  MRQRPGSAKGTM--FMTLEDETGIANLIVRP 989


>gi|163853972|ref|YP_001642015.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens PA1]
 gi|163665577|gb|ABY32944.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens PA1]
          Length = 1071

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 269/1051 (25%), Positives = 442/1051 (42%), Gaps = 80/1051 (7%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +   +        LQV + +S L GA S   +    +    PA+ +TD  +L   +   Q
Sbjct: 1    MQLTMSTP----ELQVTTHFSFLRGASSPEELFSAASLLGIPALGVTDHGSLAGMVRAHQ 56

Query: 61   KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             A   G++ ++GC+LD+D   +                +++  +    Y RL  L+S   
Sbjct: 57   AAKVTGVRLVVGCRLDLDDLSSP---------------LLVYPTDRAAYGRLCRLLSLGK 101

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                 K   R+    L+E   EG   +              +        L  FK LFG 
Sbjct: 102  ARGG-KGRCRLTWRDLEEW-QEGFFAI----------LLAEHPGPALPNDLARFKGLFGA 149

Query: 181  RLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-T 238
            R    L  R R  D  R   +   A    +P VAT + L+         DV+  +    T
Sbjct: 150  RASCALTRRFRPDDADRLDALAAAARAARVPTVATGDILYHVAGRRRLQDVVTCIRLGLT 209

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +           D +LK  +E   +F+  PEAL    EIA  C F L   A   P    +
Sbjct: 210  IDRAGFAKERHADRFLKPPAETARLFARFPEALARAGEIAAACRFSLDDLAYTYPTESRE 269

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            +        +  L     AG   R   G        +   ++L  EL++I R+ ++ YFL
Sbjct: 270  DG----LSPQERLDVLTWAGAARRYPAGV------PEAVTRQLHHELDLIGRLAYAPYFL 319

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
             V   + +A +  I    GRGS A S   + L IT IDP R +LLFERF++  R   PD 
Sbjct: 320  TVESIVAFANREKIL-CQGRGSAANSAVCFCLGITSIDPTRQNLLFERFVSEARREPPDI 378

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF  +RR+EVI+++   YG  R A        +++ ALR+VG+ + +P      L ++
Sbjct: 379  DVDFEHERREEVIQWIFQTYGRHRSALTAIVSRFRSRGALREVGKVMGLPEDVTGALNRM 438

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
              +  +  V       + R       D  +   L I+++L G  RH S H  G V+    
Sbjct: 439  TWSWSSEGVG----ERELRELNLNPDDRRLRLTLAIARELIGTPRHLSQHPGGFVLTLDR 494

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
            L +LVP+     +D  V +++   I+    +K D LGL  L  L+++ D LA+ +    D
Sbjct: 495  LDELVPVEPAAMADRQVIEWDKDDIDALKFMKVDVLGLGMLGCLRRAFDLLAEVKNDPHD 554

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ IP  D  T+ ++    TLG+FQ+ES      L  M+P    D++  V++ RPGPI  
Sbjct: 555  LASIPSKDEPTFAMIRRADTLGVFQIESRAQMAMLPRMKPKEFYDLVIEVAIVRPGPIQG 614

Query: 658  IVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V+    R+ G E++    P +  +L++T GV ++QEQ MQ+A + +G+S +EAD LRR
Sbjct: 615  DMVHPYLRRREGLEEVTYPTPELKAVLEKTLGVPLFQEQAMQVAMVGAGFSATEADELRR 674

Query: 716  AMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            +M        + + + R + G   NG ++  A   F+ L  F  YGF +SHAA++A+++Y
Sbjct: 675  SMATFKFTGGVHRFQNRLVEGMVANGYARDFAERTFKQLEGFGSYGFPESHAASFALLAY 734

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-- 832
             ++WMK H+P  F AA +  +        +  +DAR   ++I P  VN    D  +    
Sbjct: 735  ASSWMKCHHPDVFCAALLNAQPMGFYAPAQIVRDARAHGVEIRPLDVNFSQWDCTLETLG 794

Query: 833  -----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +   L    G+       ++ A   +PF SL +   R     +    L  LV 
Sbjct: 795  AGRKLFAVRLGLRLASGLAERDGHRLVAARGGRPFASLPELADRA---GVPATSLTCLVR 851

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-----TLEK 942
            A A    G +R +   ++  ++                +FA        +          
Sbjct: 852  ADAFRSLGLNRREAAWAVKALR-----------PDPLPLFAALSAPIQAEPAQTAEPAVS 900

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                ++      +    G     HPL   +  L  +G +          G  I +A +V+
Sbjct: 901  LPAMSAGGEVVADYCANGLSLRAHPLAFLRETLTTLGARPCAALERVGNGGAIVVAGIVL 960

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +Q+  + KG+   ++T  +          P
Sbjct: 961  MRQRPGSAKGTM--FMTLEDETGIANLIVRP 989


>gi|268319606|ref|YP_003293262.1| hypothetical protein FI9785_1131 [Lactobacillus johnsonii FI9785]
 gi|262397981|emb|CAX66995.1| dnaE [Lactobacillus johnsonii FI9785]
          Length = 1038

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 319/1025 (31%), Positives = 514/1025 (50%), Gaps = 39/1025 (3%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V LQ  SS++LLE    + N+ +        AIA+TD N  +  ++F + A   GI+P++
Sbjct: 4    VSLQNLSSFTLLESPTKVKNLAENAKKKGYSAIALTDINITYGLVDFYKAAKDTGIKPLL 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVR 130
            G QL I+          G         ++++    +GY+ ++ L S + L  + G++   
Sbjct: 64   GMQLRIN----------GLIDEANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENV 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR--LYVNLQR 188
            +    L++     +++        + +    N+ ++    L   +        +Y+ +  
Sbjct: 114  LTFEDLKKYLGHLILITPSNLHSEL-KMLQTNNPKMGANYLRKLQDSLPSSSSMYLGVYA 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              G   Y    +  LA    LPL A  +  +L+  +      L A+  +T +   ++   
Sbjct: 173  DSGQQEYIN-YIRSLATQFSLPLTAVEDGQYLNRNEQFLRRTLQAIKTNTHLENVEQLAK 231

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                +    SE +   S     +E+ +E A +   I           + K   +     +
Sbjct: 232  QAGSHYLKNSEELQ-VSYRKFDIEDALENAEKIGKICTAEIKFQDPQLPKFKQNKFPTSK 290

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L   A  GL  R      A+      Y++RLD+EL VI  M F  YFLIV D + +A 
Sbjct: 291  EYLHALAQEGLAKRFNDQIPAQ------YQKRLDYELQVINEMGFDNYFLIVWDVMNFAH 344

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              +I  GPGRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R  MPD D+D   +RRD
Sbjct: 345  SVHITTGPGRGSAAGSLVSYALRITEVDPIEYNLLFERFLNPARQQMPDIDLDIPDNRRD 404

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  KYG    AQI+TFG+L AK  L+DV R   +   +  R    IP+       
Sbjct: 405  EVIKYMFEKYGMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAIPHSKGKITL 464

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A       +     +     L   ++ LE L RH S HAAG+VI D  L+++V +   
Sbjct: 465  AEAYQKSKELQLLVNTNELSKILFATAEHLENLPRHYSIHAAGLVITDDSLAEIVGLQ-A 523

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
                +PVTQ     +E  GL+K DFLGL+ LT+L   +  L   G+ +D + IP DD ET
Sbjct: 524  GPLGIPVTQQTKLNVESLGLLKIDFLGLRNLTILGNIVAALRADGIDIDPNQIPLDDQET 583

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T  +FQ ES G+++ LE + PD  EDI+A+ +LYRPGPI+NI  + NRK+GK
Sbjct: 584  LALFQRGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPINNIDHFINRKHGK 643

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E++    P +  +L  T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK  E + ++
Sbjct: 644  ERVQYPDPSLKKILGTTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSKKNAEVIQRE 703

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            + +FI GA K G  K  A  +++ +A+FA+YGFN+SHA AY+ I++  A+ K HYP  F 
Sbjct: 704  RAKFIEGAIKLGRKKETAEKVYDYIAQFANYGFNRSHAVAYSKIAFWLAYFKVHYPGAFY 763

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             A +   M N  KI ++   A++  I+I+PP +     DF + + +I   L AI+G+ + 
Sbjct: 764  LALLNSNMGNRHKIAQYLMQAQEAGIKILPPDIENSKADFSLENGKILVGLKAIRGLRSD 823

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
              + I+E    +P  S+ DF  ++D+  L+   + +L+ AG  D    +R +LL+   ++
Sbjct: 824  LLKQILEI--KRPIKSMTDFLWKIDNNLLSADAVGNLIKAGTFDRLAPNRNELLKINKDL 881

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +  +    N      ++F     T   K+  EK     ++ +   E   +GF    +P+
Sbjct: 882  VESVKMAGSN-----LSLF----ETLEPKVEEEKMP--TAAEKSAMEVEAMGFSTGINPI 930

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
               +   RK   K  +   +  +G  +     ++  +Q  T+KG  + +  FS+ + E +
Sbjct: 931  IAVQKYARKFNAKRLQVFESNEQGIAV---GKLMKVKQITTKKGDNMAFAVFSDTSGEKD 987

Query: 1029 ANFFP 1033
               FP
Sbjct: 988  FTIFP 992


>gi|312887569|ref|ZP_07747163.1| DNA polymerase III, alpha subunit [Mucilaginibacter paludis DSM
            18603]
 gi|311299939|gb|EFQ77014.1| DNA polymerase III, alpha subunit [Mucilaginibacter paludis DSM
            18603]
          Length = 1066

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 243/1035 (23%), Positives = 443/1035 (42%), Gaps = 77/1035 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV S++S + G    + ++++ A      IAITD N++   +     A   GI  I
Sbjct: 3    YAELQVTSNFSFMRGGSHPDELVERAADLGYSKIAITDCNSMAGVVRAHMAAQIKGISLI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
              C+LD+                   PS++   +    + RL  L++   L  + K    
Sbjct: 63   PACRLDLHNG----------------PSLLAYPTDTSAWGRLCALLTLGNLRTE-KGKCE 105

Query: 131  ICLSWLQEIGTEGL--IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            +    L     +G+  I++  G+         F+     ++ L  ++   G++LY+   R
Sbjct: 106  LYKKDLYA-HAQGIKFIVIPPGT-----LNASFDFDDAFKQDLEEYRAALGNQLYIAASR 159

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             + G D  R  ++        +P+VAT +  + + E  E  DV   V     +       
Sbjct: 160  SYSGDDAKRFYRI----KQLGVPMVATGDVHYHNPERRELQDVETCVREKCTIHTAGYKL 215

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + YLK   E+  +F   PEALE T+EIA  C F L     + P ++  +     + 
Sbjct: 216  HANAERYLKPLDELERLFRQYPEALERTMEIADACDFSLDTLKYLEPVWVSPDG----RS 271

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L      G +   A+  +        +R++++FEL    + K + YFL + ++ + 
Sbjct: 272  ADEHLAELTWKGAKTVFAEDKL------PKHRKQIEFELAFFKKRKLAPYFLRIYEYTRE 325

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A K  I    GRGS A     + L IT ++P +  LLF RF++  R   PD D+DF  +R
Sbjct: 326  ADKRAILY-QGRGSAANCTVCFCLGITPVNPDKSRLLFSRFMSDSREEWPDVDVDFEHER 384

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+E+I+++   YG E  A + T    + K A+RDVG+A+ +    + RL   I +     
Sbjct: 385  REEIIQWIYETYGREHAAIVATVTQERYKGAIRDVGKAMGLSEDTIKRLGGGIWDFSEEA 444

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             + + I      +     D  + ++LE++++L G  R    H  G VI    LS + P+ 
Sbjct: 445  FNRERIIG----QGLNPDDTVLKKVLELTEQLMGFPRQLGQHTGGFVIMRCKLSDICPVL 500

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDD 605
                 +    ++N   +E  G++K D L L  LT ++K+   + Q     + L  +P DD
Sbjct: 501  NARMENRTQLEWNKDDLEALGILKVDVLALGMLTCIRKAFSLMKQHYNLPLTLESLPQDD 560

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
               Y ++    TLG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    
Sbjct: 561  SRVYDMICKADTLGVFQIESRAQMSMLPRLKPRVFYDLVIEVAIVRPGPIQGDMVHPYLR 620

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-K 722
            R++G + I      ++ +L  T+GV ++QEQ M+IA + +G+S +EAD LRR+M     K
Sbjct: 621  RRDGIDPIEYPSQELEDILGRTKGVPLFQEQAMEIAIVAAGFSPAEADQLRRSMATFKAK 680

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              + + +++ + G    G  +  A  IF+ L  F  YGF +SHA A+A + Y + W+K H
Sbjct: 681  GLVSQFRKKLVDGMVAKGYEEEFAKRIFKQLEGFGSYGFPESHATAFAHLVYISCWLKCH 740

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYY 837
            YP  F  A +  +     +  +   DAR   + +    +N    D  + D       +  
Sbjct: 741  YPDVFCTALLNSQPMGFYQPAEIVDDARNHGVSVREVDINYSGWDNTLEDKDGKYYAVRL 800

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
                + G+     + ++       + ++           + +  LE L  A A    G  
Sbjct: 801  GFRQVSGLREKDMQLLINNRGTG-YQAICQL----HDAGVPQDALEKLADADAFRSIGSD 855

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R Q L  +  +           ++K   +F  ++   +         +   +     +  
Sbjct: 856  RRQALWEVSAL-----------SDKPTGLFTGQQVPSAQIS----LPIMTPAEHVVQDFA 900

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
              G     HP+   +  L  + +    +      G+ +++A M+  +Q+  T KG  + +
Sbjct: 901  TTGLSLKAHPVSFVREQLDLLKVTPTGQLKNLKNGDQVKVAGMITVRQRPGTAKG--VVF 958

Query: 1018 VTFSEPAKEYEANFF 1032
            +T  +         +
Sbjct: 959  ITIKDETGYSNLVVW 973


>gi|242373992|ref|ZP_04819566.1| DNA polymerase III, alpha subunit [Staphylococcus epidermidis
            M23864:W1]
 gi|242348346|gb|EES39948.1| DNA polymerase III, alpha subunit [Staphylococcus epidermidis
            M23864:W1]
          Length = 1069

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 324/1024 (31%), Positives = 522/1024 (50%), Gaps = 79/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H++Y LL  +L + ++++K   +   A+AITDT+ L+   +F     AA I PI 
Sbjct: 3    AHLNIHTAYDLLNASLRIEDVINKAKNEGYTALAITDTHVLYGFPKFYDACIAADIHPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  L +        T             V+L    EG + L +L S + + ++      +
Sbjct: 63   GMTLILTDGLYKVET-------------VVLAQNNEGLKALYQLSSAIKMKEKE----EV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             L WL+    + LI++                 +  E   L   + F D  +V    H  
Sbjct: 106  PLEWLKRY-DDNLIII----------------FKDVESTHLQILEAFNDHTHV-YMNHTS 147

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D     +            V   ++ +L+ ED +    L A+  ++ +   +  +   +
Sbjct: 148  DDIIDRKK------------VWLQSARYLNREDADTISALQAIRDNSKLDLINESKDFGE 195

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            H+               E ++NT  I   C   L  H  +LP+F+    +  ++   + L
Sbjct: 196  HFPDQNELKNISDDVDEEVIKNTQTIVDLCQAELVYHQSLLPQFVTPNGEVAKEYLWSVL 255

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
             +K                  H   Y +RL  E  +I  M F  YFLIV+D I +AK ++
Sbjct: 256  IDKLNE------------WNLHNDQYLERLKHEYEIITNMGFEDYFLIVSDLIHYAKTHD 303

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++VI
Sbjct: 304  VMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVI 363

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     +    
Sbjct: 364  QYVQDKYGDLHVSGIVTFGHLLARAVGRDVGRIMGFDETTLNEISKLIPHKLGITLDEAY 423

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
              D+  F+     +   +   ++S+KLEGL RH STHAAGI+I D+PL +  P+      
Sbjct: 424  QQDN--FKAFVHRNHRNELWFDMSKKLEGLPRHTSTHAAGIIINDQPLYKFAPLTLGDTG 481

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  IPFDD + + 
Sbjct: 482  --LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIVTQVKKDLNIDIDVETIPFDDRKVFK 539

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++   K
Sbjct: 540  LLSQGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSK 599

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++
Sbjct: 600  VEYLHPDLEPILKNTYGVIIYQEQIMQIASKFANFSYGEADILRRAMSKKNRAVLESERQ 659

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++GA  NG  + ++  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K +YP  F A 
Sbjct: 660  HFVNGAKDNGYDEQMSKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVYYPNYFYAN 719

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + + +K      +A+   I I+PP++N     +K     IY SL  IKGVG  + 
Sbjct: 720  ILSNVIGSEKKTANMIDEAKHQKINILPPNINESHWFYKATSQGIYLSLGTIKGVGYQSV 779

Query: 851  RHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I++    +  F    DF  R+  +   R++LE+L+  GA D F  +R  LLQ++D + 
Sbjct: 780  KLIVDERYNNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDNFDKNRATLLQAIDQVL 839

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 VE++       +F       + K   E        +    E+  LGFY S HP++
Sbjct: 840  DTTSDVEQDDM-----LFD----ILTPKQVYEDKEELPDKLLSNYEKEYLGFYISKHPVE 890

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                   K    G  +         I +     + +Q +T+ G  + +VT ++     + 
Sbjct: 891  ---KEFEKKQYLGIYKLSNAQNFQPILV--QFDTIKQIRTKNGQNMAFVTLNDGMTLMDG 945

Query: 1030 NFFP 1033
              FP
Sbjct: 946  VIFP 949


>gi|163856925|ref|YP_001631223.1| error-prone DNA polymerase [Bordetella petrii DSM 12804]
 gi|163260653|emb|CAP42955.1| DNA polymerase III, alpha subunit [Bordetella petrii]
          Length = 1065

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 265/1072 (24%), Positives = 432/1072 (40%), Gaps = 104/1072 (9%)

Query: 1    LTQYLEKS----------PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
            ++  +  +          P++  LQ  S++S L+GA     ++ + A     A+AITD  
Sbjct: 1    MSSAMPSAISSTPSSALLPAYAELQCLSNFSFLQGASRPEELVAQAAQLGYAALAITDEC 60

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            +L   +     A +  +  IIG  L +             +     P++VLL    EGY 
Sbjct: 61   SLAGVVRAHVAAKSCELPLIIGSTLAL-----------QGSADAPGPTLVLLAQNREGYG 109

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEG--------LIMLTGGSSGPIDRAFFFN 162
             L EL++        K   R+C   +   G            + +               
Sbjct: 110  NLSELITLGRSR-APKGQYRLCADDIAAPGPGHAHLRGVPDCLAILAPPDSI-------- 160

Query: 163  SSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLS 221
             +    ++     + F  R +V L   HR  D    + V Q A    LP+VA        
Sbjct: 161  DADTLARQAAWLARTFPGRAWVGLTLLHRARDDLHRAAVQQAAQAAALPMVALGRVQMHL 220

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
                  HD L A+     V+Q        +     R+ +        +AL  T+ IA+RC
Sbjct: 221  RSRKPLHDTLAAIRSKRSVAQCGYDLQ-ANAEQHLRTRLRLASLYPADALAQTLVIAQRC 279

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            SF L       P  I    +       + LR +  AG            G        ++
Sbjct: 280  SFSLDTLRYEYPDEIVPAGE----TPASYLRREVYAGAR------GRYHGDVPASVTAQI 329

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + EL +I  +K+  YFL V D +Q A++ NI    GRGS A SV  Y L IT + P +  
Sbjct: 330  EKELTLITELKYEPYFLTVYDIVQEARRRNIL-CQGRGSAANSVVCYCLGITAVAPEQSK 388

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
             LFERF++ +R   PD D+DF   RR+E+I+Y+ +KYG  R A      + + ++ LRD 
Sbjct: 389  ALFERFISKERREPPDIDVDFEHQRREEIIQYIYDKYGRHRAALTGVVITYRPRSVLRDT 448

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
            GRAL +    +D + +           L+ + +                   +++ L G 
Sbjct: 449  GRALGVDLGIIDAVARAHQWWDGRQAMLRTLGNC----GLDPDSRVARHWAVLAETLIGF 504

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             RH S H  G VI    L++LVP+      D  V Q++   ++  GL+K D L L  L++
Sbjct: 505  PRHLSQHPGGFVISRGNLARLVPIENAAMPDRSVVQWDKDDLDALGLLKVDILALGMLSV 564

Query: 582  LQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            L ++LD  AQR  +   L  IP DD  TY ++    T+G+FQ+ES      L  ++P   
Sbjct: 565  LHRALDLTAQRRGQPLALHEIPQDDEATYDMICDADTVGVFQIESRAQMSMLPRLRPREY 624

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
             D++  V++ RPGPI   +V+   K  +  E        +  +L  T+GV I+QEQVMQI
Sbjct: 625  YDLVVQVAIVRPGPIQGGMVHPYLKRRQGLEDETYPSEAVRGVLSRTKGVPIFQEQVMQI 684

Query: 699  AQLLSGYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            A + +G+S  EAD LRR+M     K  +DK  ++ ++G  KN  S   A  I   +  F 
Sbjct: 685  AMVAAGFSAGEADELRRSMAAWKRKGGIDKYTDKLVAGLLKNNYSAEFAAAIIRQIEGFG 744

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            +YGF +SHAA++A+++Y ++W+K H P  FLAA +  +        +  QDAR+  + ++
Sbjct: 745  EYGFPESHAASFALLAYASSWLKRHEPEAFLAALLNSQPMGFYAPAQLVQDARRHGVVVL 804

Query: 818  PPSVNTPCVDFKVGD-----------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            P      C +  + +             +   L  ++G+     R I +A A +P+    
Sbjct: 805  PADAAVSCWEAALENLPAPPGQPPARPAVRLGLNQVQGLSEDAGRRIEQARAARPYTDTR 864

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN----- 921
            D   R                         SR +L          +    +   +     
Sbjct: 865  DLGRRA----------------------ALSRHELDALAAADALRSLAGHRRLASWEASA 902

Query: 922  --KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
               H ++        +    L              + R L      HP+ + +P LR + 
Sbjct: 903  SVAHRDLLRDADVAEAATPVLP---APTEGQSISADYRSLRLTLRRHPVALLRPRLRALR 959

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             +              R   +V  +Q+ +T KG+   +VT  +         
Sbjct: 960  FETAAVLRHYPDRRLARACGLVTVRQRPQTAKGT--IFVTLEDETGPVNVVV 1009


>gi|225626616|ref|ZP_03784655.1| DNA polymerase III, alpha subunit [Brucella ceti str. Cudo]
 gi|225618273|gb|EEH15316.1| DNA polymerase III, alpha subunit [Brucella ceti str. Cudo]
          Length = 1078

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 252/1046 (24%), Positives = 434/1046 (41%), Gaps = 83/1046 (7%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPII 71
              S++S L GA     ++++  A     I I D N L   +    +       +G +  I
Sbjct: 10   AASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQWKDIRKESGFRLFI 69

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+L                     P +V+       Y +L  L++        K    +
Sbjct: 70   GCRLSFIDG---------------TPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGECHL 114

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHR 190
              + L     +  I +        D A           RL    +     +++ L   H+
Sbjct: 115  EWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTMPHQ 164

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VT 249
            G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R     
Sbjct: 165  GQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLEKN 224

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + +LK   EMV +F D PEA+  T +     +F L       P           K  + 
Sbjct: 225  AERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KTAQQ 280

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L +    G         I         +  ++ EL +IAR+++  YFL V D +  A++
Sbjct: 281  HLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTHARE 335

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +RR+E
Sbjct: 336  KGIL-CQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHERREE 394

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       +  
Sbjct: 395  VMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGGIDR 454

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+    
Sbjct: 455  QHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIGPAA 510

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD------LSLIPF 603
                   +++   I++ GL+K D L L  LT ++K+ D + Q   ++       L+ +P 
Sbjct: 511  MDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLASLPR 570

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+  
Sbjct: 571  EDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMVHPY 630

Query: 664  RKNGKEKIVSIHP----------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             +    +     P           +  +L +T+GV ++QEQ M+IA   + ++  EA+ L
Sbjct: 631  LRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEANQL 690

Query: 714  RRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM    K   +   +++ I G    G  +T A N F  +  F +YGF +SHAA++A +
Sbjct: 691  RRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASFAHL 750

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  + +
Sbjct: 751  VYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNILEE 810

Query: 833  N-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +      I G        ++    + P+ ++ED   R+   +L+RR    L  
Sbjct: 811  TPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRL---RLDRRAFTLLAD 866

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            A A       R   L ++  +            ++   +F     +   +    K     
Sbjct: 867  ADAFGSLDIDRRAALWAVRRL----------PNDETLPLFRAAAASELAQEPRTKLPEMA 916

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +S     +         GHPL   +  L   G+           G  +++A +V  +Q+ 
Sbjct: 917  ASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQKGADGRRMKVAGVVTVRQRP 976

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + KG  + ++T  +         +P
Sbjct: 977  GSAKG--VVFLTIEDETGIANIVIWP 1000


>gi|254563941|ref|YP_003071036.1| error-prone DNA polymerase, DNA polymerase III subunit alpha
            [Methylobacterium extorquens DM4]
 gi|254271219|emb|CAX27231.1| error-prone DNA polymerase, DNA polymerase III, alpha subunit
            [Methylobacterium extorquens DM4]
          Length = 1067

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 270/1039 (25%), Positives = 440/1039 (42%), Gaps = 76/1039 (7%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
             LQV + +S L GA S   +    +    PA+ +TD  +L   +   Q A   G++ ++G
Sbjct: 5    ELQVTTHFSFLRGASSPEELFSAASLLGIPALGVTDHGSLAGMVRAHQAAKVTGVRLVVG 64

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            C+LD+D   +                +++  +    Y RL  L+S        K   R+ 
Sbjct: 65   CRLDLDDLSSP---------------LLVYPTDRAAYGRLCRLLSLGKARGG-KGRCRLT 108

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRG 191
               L+E   EG   +                       L  FK LFG R    L  R R 
Sbjct: 109  WRDLEEW-QEGFFAI----------LLAEQPGSALPNDLARFKGLFGARASCALTRRFRP 157

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTP 250
             D  R   +   A    +P VAT + L+         DV+  +    T+           
Sbjct: 158  DDADRLDALAAAARAARVPTVATGDILYHVAGRRRLQDVVTCIRLGLTIDRAGFAKERHA 217

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            D +LK  +E   +F+  PEAL   VEIA  C F L   A   P    ++        +  
Sbjct: 218  DRFLKPPAETARLFARFPEALARAVEIAAACRFSLDDLAYTYPTESREDG----LSPQER 273

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L     AG   R   G        +   ++L  EL++I R+ ++ YFL V   + +A + 
Sbjct: 274  LDVLTWAGAARRYPAGV------PEAVTRQLHHELDLIGRLAYAPYFLTVESIVAFANRE 327

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I    GRGS A S   + L IT IDP R +LLFERF++  R   PD D+DF  +RR+EV
Sbjct: 328  KIL-CQGRGSAANSAVCFCLGITSIDPTRQNLLFERFVSEARREPPDIDVDFEHERREEV 386

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+++   YG  R A        +++ ALR+VG+ + +P      L ++  +  +  V   
Sbjct: 387  IQWIFQTYGRHRSALTAIVSRFRSRGALREVGKVMGLPEDVTGALNRMTWSWSSEGVG-- 444

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                + R       D  +   L I+++L G  RH S H  G V+    L +LVP+     
Sbjct: 445  --ERELRELNLNPDDRRLRLTLAIARELIGTPRHLSQHPGGFVLTLDRLDELVPVEPAAM 502

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
            +D  V +++   I+    +K D LGL  L  L+++ D LA+ +    DL+ IP  D  T+
Sbjct: 503  ADRQVIEWDKDDIDALKFMKVDVLGLGMLGCLRRAFDLLAEVKNDPHDLASIPSKDEPTF 562

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNG 667
             ++    TLG+FQ+ES      L  M+P    D++  V++ RPGPI   +V+    R+ G
Sbjct: 563  AMIRRADTLGVFQIESRAQMAMLPRMKPKEFYDLVIEVAIVRPGPIQGDMVHPYLRRREG 622

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMD 726
             E++    P +  +L++T GV ++QEQ MQ+A + +G+S +EAD LRR+M        + 
Sbjct: 623  LEEVTYPTPELKAVLEKTLGVPLFQEQAMQVAMVGAGFSATEADELRRSMATFKFTGGVH 682

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + + R + G   NG ++  A   F+ L  F  YGF +SHAA++A+++Y ++WMK H+P  
Sbjct: 683  RFQSRLVEGMVANGYARDFAERTFKQLEGFGSYGFPESHAASFALLAYASSWMKCHHPDV 742

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-------NRIYYSL 839
            F AA +  +        +  +DAR   ++I P  VN    D  +           +   L
Sbjct: 743  FCAALLNAQPMGFYAPAQIVRDARAHGVEIRPLDVNFSQWDCTLETLGAGRKLFAVRLGL 802

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
                G+       ++ A   +PF SL +   R     +    L  LV A A    G +R 
Sbjct: 803  RLANGLAERDGHRLVAARGGRPFASLPELADRA---GIPAASLTCLVRADAFRSLGLNRR 859

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-----TLEKFSVENSSVRFEN 954
            +   ++  ++                +FA        +              ++      
Sbjct: 860  EAAWAVKALR-----------PDPLPLFAALSAPIQAEPAQTAEPAVSLPAMSAGGEVVA 908

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +    G     HPL   +  L  +G +          G  I +A +V+ +Q+  + KG+ 
Sbjct: 909  DYCANGLSLRAHPLAFLRETLTALGARPCAALERAGNGAPIVVAGIVLMRQRPGSAKGTM 968

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
              ++T  +          P
Sbjct: 969  --FMTLEDETGIANLIVRP 985


>gi|222108967|ref|YP_002551233.1| DNA polymerase III subunit alpha [Agrobacterium radiobacter K84]
 gi|221727889|gb|ACM30939.1| DNA polymerase III subunit alpha [Agrobacterium radiobacter K84]
          Length = 1087

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 258/1042 (24%), Positives = 444/1042 (42%), Gaps = 78/1042 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  LQV + +S L GA S   + +   A     + + D N+L   +   + + A G++ 
Sbjct: 2    SYAELQVTTHFSFLRGASSAQELFETAKALGIEVLGVVDRNSLAGIVRALEASRATGLRL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            ++GC+LD+                    S+++  +    Y RL  L++        K + 
Sbjct: 62   VVGCRLDLADGM----------------SVLVYPTDRAAYSRLTRLITLGKSRGG-KNNC 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
             +    +                G I              +L    ++FGDR YV+L  R
Sbjct: 105  ILHWDDVVAYN-----------DGMIGILVPDLPDDTCGIQLRKMAEVFGDRAYVSLCLR 153

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPR 247
             R  D+ R  ++  LA   ++  V TN+ LF      +  D++  +   T + +      
Sbjct: 154  RRQNDQLRLHEISNLAARFKVRPVVTNDVLFHEPGRRQLQDIVTCIRTRTTIDEVGFERE 213

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               D YLK   EM  +F    +AL  T+EI RRC+F L+      P        D Q   
Sbjct: 214  RHADRYLKPPEEMQRLFPRYRQALARTMEIVRRCTFSLEELTYQYPEEAIVPGKDAQASL 273

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+         +  R  +G         D  + +  EL++I  MK++ YFL V   +++A
Sbjct: 274  EHY----VWQCVPDRYPEGL------PPDVLKVVRHELDLIRTMKYAPYFLTVFSIVRYA 323

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I    GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +RR
Sbjct: 324  RSQGIL-CQGRGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERR 382

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+++   Y  E+ A   T    +A+ A+RDVG+AL +P   +  L   + +      
Sbjct: 383  EEVIQWIYRTYTREKAALCATVTRYRARGAIRDVGKALGLPEDVIKALSSGMWSW----- 437

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            S +    + R       D  +   L+++Q+L G  RH   H  G V+    L  LVP+  
Sbjct: 438  SEEVCDRNVRELNLNPDDRRLVLTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEP 497

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606
                D  + +++   +E    +K D L L  LT + K+ D + +   +  +LS I  +D 
Sbjct: 498  ATMKDRQIIEWDKDDVEALKFMKVDILALGMLTCMAKAFDLIREHKDRDLNLSKIEQEDS 557

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    TLG FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 558  ATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPYLRR 617

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE- 723
            + GKE +    P ++ +L +T GV ++QE  M++A + +G++  EAD LR++M       
Sbjct: 618  REGKEAVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFTG 677

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             + + K++ +SG  +NG +   A   F  L  F  YGF +SHAA++A+I+Y ++++K HY
Sbjct: 678  GVSQFKDKLVSGMVRNGYAPEFAEKTFSQLEGFGSYGFPESHAASFALIAYASSYIKCHY 737

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRIYY 837
            P  F AA +  +        +   DAR   +++ P  +N    D  +        + +  
Sbjct: 738  PEAFCAALINSQPMGFYAPAQIVGDARAHGVEVRPVCINRSRWDCTLERIGNSDRHAVRL 797

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGY 896
                +KG+    A  ++ A  +  F S++D   R     +    L  L  A A       
Sbjct: 798  GFRQVKGLAVADAARVVAARMNNAFVSVDDMWRRT---GVPSEALVQLAKADAFLPSLKL 854

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV-----ENSSVR 951
            +R   L ++  ++                +FA         I  ++              
Sbjct: 855  ARRDALWAIKALRDQ-----------PLPLFAAAAEREMAAIAEQQEPEVALRQMTDGHN 903

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +    G     HP+   +  L    I    E++ +  G  +  A +V+ +Q+  +  
Sbjct: 904  VIEDYSHTGLTLRQHPIAFLRKDLSVRNIITCAEAMNSRDGRWVYTAGLVLVRQKPGSAN 963

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G  + ++T  +         +P
Sbjct: 964  G--VMFITIEDETGPANLVVWP 983


>gi|254476960|ref|ZP_05090346.1| DNA polymerase III, alpha subunit subfamily, putative [Ruegeria sp.
            R11]
 gi|214031203|gb|EEB72038.1| DNA polymerase III, alpha subunit subfamily, putative [Ruegeria sp.
            R11]
          Length = 1123

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 256/1051 (24%), Positives = 449/1051 (42%), Gaps = 80/1051 (7%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             +SP +V   + S +S L  A    ++     A    ++ I D N L   +    KA  A
Sbjct: 34   PRSP-YVEFGLASCFSFLHAASDAVDLTATAHALGYDSLGIADRNTLAGVVRLFTKARTA 92

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-- 123
             I+P+IG +L +                     ++        Y RL  L+SR  +    
Sbjct: 93   CIRPMIGARLILMCG----------------CDLLAYPQDRAAYGRLSSLLSRGKMQTAD 136

Query: 124  ---QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
               Q K +  + L  L+E   +GL ++        D A   +        L   + +   
Sbjct: 137  GNWQDKGATHLTLDMLRE-HADGLHLILMPPD---DHATTLHQLARLLPVLPQMRHIAAR 192

Query: 181  RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             LY      RG DR R +++ +LA  H L L+ATN+ L+   +     DV+  + + T +
Sbjct: 193  YLY------RGDDRARINRLDRLARQHGLMLLATNDVLYHRPDRRPLQDVMTCIRNGTTI 246

Query: 241  SQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            ++         + +LK+  EM  +F+D P A+  T ++A   +F L       P  I  +
Sbjct: 247  AKAGYLLEANAERHLKSPEEMCRLFADWPHAIRATRKLADDITFQLSDLKYEYPHEIVPQ 306

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 ++    L+     G + R   G         D R  ++ E ++I R   + YFL 
Sbjct: 307  G----QQPLERLQQLTWEGAKERYPAGV------PTDVRLLIEKEFDLIDRKGIARYFLT 356

Query: 360  VADFIQWAKKNNIPV--GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            + D +++A+++  P     GRGS A S   Y L IT +DP +  +LFERFL+  R   PD
Sbjct: 357  IHDIVRFAREDAEPPILCQGRGSAANSAVCYCLGITAVDPSQTDVLFERFLSEARDEPPD 416

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  +RR+EVI+Y+  KYG  R     T    + ++A+R+VG+A+ +      +L  
Sbjct: 417  IDVDFEHERREEVIQYIYQKYGRARAGLCATVIHYRPRSAIREVGKAMGLSEDVTSKLAG 476

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
             I          Q     +R     L+DP +  +L++++++ G+ RH S H  G ++ +R
Sbjct: 477  TIWG----SFEGQMDDARAREAGLDLSDPYLRMVLKLAREMIGMPRHLSQHVGGFILTER 532

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596
            PL+++VP+     +D    +++   I+  G+ K D L L  LT + K    L     +  
Sbjct: 533  PLTEIVPIGNGAMADRSFIEWDKDDIDALGIFKVDVLALGMLTCIAKVFGLLEAHYGRQL 592

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            D++ +P +D  TY +L    +LG+FQ+ES      L  ++PD   D++  V++ RPGPI 
Sbjct: 593  DMASVPPEDKATYKMLCEGDSLGVFQVESRAQMAMLPKLRPDTFYDLVIEVAIVRPGPIQ 652

Query: 657  NIVVYNNRK---------NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
              +V+   +           +         ++ +L  T GV I+QEQ M+IA   + +S 
Sbjct: 653  GDMVHPYLRRRQKLEPVDYPRPGPEYPQDEMERILHRTMGVPIFQEQAMKIAMDAALFSP 712

Query: 708  SEADVLRRAMGKKI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             E++ LR+AM     +  ++  +++ +      G     A   F+ +  F +YGF +SHA
Sbjct: 713  EESNALRKAMATFRSRGTIETLQDKMVGRMVARGYDPDFAQRCFDQIKGFGEYGFPESHA 772

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A++A + Y ++WMK HYP  F    +  +        +  +DAR   +++    VN    
Sbjct: 773  ASFAKLVYVSSWMKCHYPAAFACGLLNSQPMGFYAPAQIVRDARDHGVEVRAVDVNYSDW 832

Query: 827  DFKVG----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
            D  +        +   +  + G+    A+ IM A  D PF  + D  SR    +L+   L
Sbjct: 833  DCTLEPTDRGFALRLGMRQVDGMRMDAAQRIMAAR-DSPFADVADLKSRC---RLDAGSL 888

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
              L  A AL   G  R   L             +  +      IF H +           
Sbjct: 889  RRLAAADALRSMGMDRRAALW----------QTQALKDAPSLPIFEHAETAAHGTEPEVH 938

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                  +     + + L      HP+  ++  L        ++   +  G  + LA +V+
Sbjct: 939  LPAMPRAEHVVADYQTLRLSLKAHPMQFFRASLHAQRFHRAQDLKGSHHGQRVSLAGLVL 998

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +Q+  + KG  + ++T  +         +P
Sbjct: 999  VRQKPGSAKG--VCFITLEDETGVANLVIWP 1027


>gi|166711029|ref|ZP_02242236.1| DNA polymerase III alpha chain [Xanthomonas oryzae pv. oryzicola
            BLS256]
          Length = 1083

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 263/1047 (25%), Positives = 452/1047 (43%), Gaps = 87/1047 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S +S L GA S   +  +       A+AITD  +L   +   + +   G++
Sbjct: 46   PTYAELHCLSDFSFLRGASSAEQLFARAQHCGYSALAITDECSLAGIVRGLEASRVTGVR 105

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +  +                      VLLV  A GY +L  LV+        K +
Sbjct: 106  LIVGSEFTLIDG----------------TRFVLLVENAHGYPQLCGLVTTAR-RAASKGA 148

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             R+  + ++    +         +  +   +       AE+     +++FG+R ++ ++ 
Sbjct: 149  YRLGRADVEAQFRD--------VAPGVFALWLPGVQPQAEQGA-WLQQVFGERAFLAVEL 199

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR  D   R   +  LA    +  VA+ +       +    D L A+ H T+   +    
Sbjct: 200  HREQDDGARLQALQALAQQLGMTAVASGDVHMAQRRERIVQDTLTAIRH-TLPLAECGAH 258

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +  +     R+            L+  V +A+RC+F +   +   PR +  E        
Sbjct: 259  LFRNGERHLRTRRALGNIYPDALLQAAVALAQRCTFDISKISYTYPRELVPEG----HTP 314

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR    AG+  R   G  A        R+ ++ EL +IA  K+  +FL V D +++A
Sbjct: 315  TSYLRQLTEAGIRKRWPGGITA------KVREDIEKELALIALKKYEAFFLTVQDVVRFA 368

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++ NI    GRGS A S   YAL IT ++P    LL  RFL+  R   PD D+DF  +RR
Sbjct: 369  REQNIL-CQGRGSSANSAVCYALGITAVNPDETRLLMARFLSEKRDEPPDIDVDFEHERR 427

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV  KYG ER A   T    + K+A+RDV +A  +P  Q+  L            
Sbjct: 428  EEVLQYVYRKYGRERAALAATVICYRGKSAVRDVAKAFGLPPDQIALLANCYGWGNGETP 487

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              Q I +        LA+P ++++L +++ L    RH S H  G VI D PLS LVP+  
Sbjct: 488  MEQRIEE----AGFDLANPLINKILLVTEHLCDHPRHLSQHVGGFVISDEPLSLLVPVEN 543

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
               +D  + Q++   +E   L+K D L L  LT ++K+LD +   RG    ++ +P +D 
Sbjct: 544  AAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCIRKTLDLVRCHRGRDYSIATLPGEDL 603

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R
Sbjct: 604  PTYKMIQRADTVGVFQIESRAQMAMLPRLKPAKFYDLVIEVAIVRPGPIQGDMVHPYLRR 663

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-E 723
            + G+E +    P ++ +LK T GV ++QEQVM++    + Y+ SEAD LRR+M    +  
Sbjct: 664  RQGREDVSYPSPAVEDILKPTLGVPLFQEQVMELLMHAADYTESEADNLRRSMAAWRRGG 723

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +M++ + R        G + T    IFE +  F  YGF +SHAA++A + Y + W+K H 
Sbjct: 724  DMEQHRTRVRERMQGKGYASTFIDQIFEQIKGFGSYGFPQSHAASFAKLVYASCWLKRHE 783

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQD-----ARQFNIQIMPPSVNTPCVDFKVGDN----- 833
            P  F    +  +        +  QD       +  ++++P  V     D  +        
Sbjct: 784  PAAFACGLLNAQPMGFYSASQIVQDARRGSPERERVEVLPVDVVHSDWDNTLVGGRPWRS 843

Query: 834  --------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                     I   +  + G+    A+ I+ A   + F  + D C R     L+ +   +L
Sbjct: 844  AADPGEQPAIRLGMRQVAGLSDVVAQRIVAARTQRAFADIGDLCLRA---ALDEKARLAL 900

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              AGAL     +R     ++  ++     +                   S +     F  
Sbjct: 901  AEAGALQGMVGNRNAARWAMAGVEARRPLL-----------------PGSPEERPVAFEA 943

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             ++      + R +G     HP+ + +P +R+  I G  +      G+ + +A +V  +Q
Sbjct: 944  PHAGEEILADYRSVGLSLRQHPMALLRPQMRQRRILGLHDLQGRPHGSGVHVAGLVTQRQ 1003

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  T KG+   +VT  +         +
Sbjct: 1004 RPATAKGT--IFVTLEDEHGMINVIVW 1028


>gi|296447098|ref|ZP_06889030.1| DNA polymerase III, alpha subunit [Methylosinus trichosporium OB3b]
 gi|296255367|gb|EFH02462.1| DNA polymerase III, alpha subunit [Methylosinus trichosporium OB3b]
          Length = 1065

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 254/1061 (23%), Positives = 439/1061 (41%), Gaps = 97/1061 (9%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----QKAC 63
            +P +  L   +++S L GA     ++ +    +   + I D N+L   +       + A 
Sbjct: 2    APRYAELATATNFSFLRGASHPEEMVARALELRHCGVGIADRNSLAGVVRAFSFLREHAE 61

Query: 64   AA-GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
            AA G +  +G +L    +                P I+        Y RL  L++R  + 
Sbjct: 62   AAPGFRLAVGARLVFADE---------------TPDILCYPQDRAAYGRLCRLLTRGNMR 106

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             + K   R+ L  L   G    I++    +G +  A                 + F  RL
Sbjct: 107  AE-KGECRLLLDDLLAFGAGQQIIVM--ENGALPPAVA---------------RAFRGRL 148

Query: 183  YVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++      G D R    + + LA   +LPL+A N+ L          DVL  V   T + 
Sbjct: 149  WLAATALYGPDMRAALLRRIALAQETKLPLIAVNDPLMHDPARRPLADVLACVREKTTLD 208

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            +                +     + L  A    V    R    L      L      E  
Sbjct: 209  EAGFLLSANAERCL---KSGEEMARLFAAAPEAVAETARFLDGLSFRLTDLAYHYPSELR 265

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
            +    E+  L + A  G + R   G        +     L  EL ++A++ ++ YFL V 
Sbjct: 266  EGFSSEQEALAHFAREGAKTRYPDGV------PETVEALLRHELKLVAQLNYAAYFLTVH 319

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D +++A+   I    GRGS A SV  Y L +T++DP +  LLFERF++  R   PD D+D
Sbjct: 320  DIVRFARSRGIL-AQGRGSAANSVICYCLGVTEVDPTKHDLLFERFVSAARNEPPDIDVD 378

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+EV++Y+  ++G ER     +  + ++++A+R+VG+A  +    V RL   +  
Sbjct: 379  FEHERREEVMQYIYERFGRERAGLTASVVTYRSRSAIREVGKAFGLSADVVSRLSGNVWG 438

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 VS + +A         + DP + + LE++++L G  RH S H  G VI    L +
Sbjct: 439  ASRGGVSDEGVAH----AGLDMRDPRLAKALELTRELTGFPRHLSQHTGGFVITRERLDE 494

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSL 600
            +VP+           +++   ++  G++K D L L  LT ++K L  LA+R  V   LS 
Sbjct: 495  VVPLAPAAMEGRTTIEWDKDDLDALGILKIDVLALGMLTCMRKGLSLLAERYGVVHRLST 554

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP ++   Y +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V
Sbjct: 555  IPAEEKCVYDMISRADTIGVFQIESRAQMSMLPRLRPEKFYDLVIEVAIVRPGPIQGDMV 614

Query: 661  YN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
            +    R+ GKEK+      ++  L +T GV ++QEQ M+IA +  G++  EAD LRRAM 
Sbjct: 615  HPYLRRRTGKEKVSYPSKELEQALGKTLGVPLFQEQAMRIAIVAGGFTPEEADRLRRAMA 674

Query: 719  KKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
               +   +   +E+ +SG    G ++  A   +  +  F  YGF +SHAA++A++ Y +A
Sbjct: 675  TFKRVGTIGLFREKMLSGMVARGYARDFAERCWSQIEGFGSYGFPESHAASFALLVYASA 734

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----- 832
            W+K  YP  F  A +  +        +  +DA++  + +    VN    D  +       
Sbjct: 735  WLKCRYPDVFCCALLNSQPMGFYAPAQIVRDAQEHGVGVHEVDVNFSDWDCTLTPRAGET 794

Query: 833  ----------------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
                              +      I GV     R ++       +DS+ D   R    +
Sbjct: 795  RLHPRHVAMAQDIRATQDVRLGFRQIVGVKEEDMRRLVARRGAG-YDSVRDLWLR---GE 850

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            L+  VLE L  AGA    G  R   L ++  +         NR    +++       F+ 
Sbjct: 851  LSPAVLERLAEAGAFASLGLPRRDALWAVQGL---------NRVGDKDDLPLLRDLAFAP 901

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRG 992
            +                 + R L      HP+   +  L   GI           +   G
Sbjct: 902  QEPDAHLPPLPPGAEVIEDYRFLSLSLKAHPVAFLRQRLAAKGIVPCSALGGGPTSVRDG 961

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + +A +V+ +Q+  +  G  + ++T  +         +P
Sbjct: 962  ARVMVAGLVLVRQRPGSASG--VVFMTIEDETGVANIVVWP 1000


>gi|13473732|ref|NP_105300.1| DNA polymerase III alpha chain [Mesorhizobium loti MAFF303099]
 gi|71151836|sp|Q98E34|DNAE2_RHILO RecName: Full=Error-prone DNA polymerase
 gi|14024483|dbj|BAB51086.1| DNA polymerase III alpha chain [Mesorhizobium loti MAFF303099]
          Length = 1118

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 251/1058 (23%), Positives = 432/1058 (40%), Gaps = 89/1058 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +    + S++S L GA     ++         AI + D N +   +   Q+A    +   
Sbjct: 9    YAEFGIQSNFSFLRGASKPEELVVAAKLMGFSAIGLADRNTVAGVVRAWQQAKVEKLAYH 68

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ-GKQSV 129
             GC+L                     P I+       G+  L  ++++  L D+  K + 
Sbjct: 69   PGCRLVF---------------GDGTPDILAYPRNRAGWGHLCRMLTQANLRDETEKGAT 113

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR- 188
             +    L E          G              ++ +   L   K  FG  L + +   
Sbjct: 114  LLQRDDLLEW---------GDLMSLAVLPDLAAGAEDSLALLGQIKDRFGRALRLGVSPC 164

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQKDRPR 247
            + GYDR+R  Q   LA    +PL+ATN+ L+ + E     DVL A+  +T V        
Sbjct: 165  YAGYDRFRIEQAAALAQVAGIPLMATNDVLYHTAERRPLQDVLTAIRLNTPVAEVGLELS 224

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               + +LK   EM  +F   P+AL  T+  A   +F L       P    +         
Sbjct: 225  ANAERHLKPPLEMARLFRRHPQALAETLRFAEELTFSLSDLQYNYPDEPTESGLG----P 280

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + EL   A  G   R   G            +R++ EL +I R+ ++ YFL V D +++A
Sbjct: 281  QAELERLAREGAARRYPSGV------PHSVIKRIEEELALIERLNYARYFLTVYDIVKYA 334

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  +I    GRGS A S+  + + IT++ P R   LFERF++ +R   PD D+DF  ++R
Sbjct: 335  RSQDIL-CQGRGSAANSIVCFCIGITEVGPDRIDTLFERFISEERNEPPDIDVDFEHEKR 393

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            + VI+Y+  KY  +R A      S + ++ALR+V +A+ +       L   I       V
Sbjct: 394  ETVIQYIYEKYSSKRTALAAAVISYRGRSALREVSKAMGLSEDVRASLSGSIWGWSTSEV 453

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                   ++R      +DP+   ++E + ++ G  RH S H  G VI    L ++VP+ +
Sbjct: 454  G----EKEARAGGLDRSDPTSRHVMERANEIMGFPRHLSQHVGGFVITKDRLDEIVPIVK 509

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--------VKVDLS 599
                +  + +++   ++   ++K D L L  LT LQ++   L                L+
Sbjct: 510  TAMDERKMVEWDKDDLDAVKILKVDVLALGMLTCLQRAFILLTDHYPKARDPYGQPYVLA 569

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +P +D   Y ++    TLG+FQ+ES      L  ++P    D++  V++ RPGPI   +
Sbjct: 570  SLPPEDKRVYDMIGRADTLGVFQIESRAQMSMLPRLKPKDFYDLVIEVAIVRPGPIQGDM 629

Query: 660  VYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            V+    R+ GKEK     P ++ +L +T GV ++QEQ M+IA +  G+   EAD LRRAM
Sbjct: 630  VHPYLRRRQGKEKPEYQKPELEAILSKTLGVPLFQEQAMKIAIVAGGFRPGEADELRRAM 689

Query: 718  GKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
                +   +   ++R I G    G +K  A   F+ +  F +YGF +SHAA++A++ Y +
Sbjct: 690  ATFKRTGTIGNYRQRMIDGMVGKGYTKDFAERCFKQIEGFGEYGFPESHAASFALLVYAS 749

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----- 831
             W KT YP  F AA +  +     +  +  +DAR   + I    VN    D  +      
Sbjct: 750  CWFKTFYPDVFCAAILNSQPMGFYQPAQLVRDARDHGVDIREVDVNCSAWDCTLEKVPFD 809

Query: 832  -----------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                             ++ +      IKG+         +      ++++ D   R   
Sbjct: 810  PARILPRHADMRGVIETNHAVRLGFRQIKGLSKERMEDFAKRRGSG-YETVRDVWLR--- 865

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
              L+   +E L  A A    G  R   L  +  +             +   +F       
Sbjct: 866  SGLDVDEIERLAQADAFRSIGLDRRAALWEVRAL-------GAKSAAEKLPLFDQPALRL 918

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
             +     K           ++ R LG     HP+   +  L + G+       +   G  
Sbjct: 919  RELEPETKLPKMPLGEHVIHDYRSLGLSLKAHPVAFLRERLDRAGVTPNANLPSQRDGRR 978

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +A +V+ +Q+    KG+   ++T  +        F+
Sbjct: 979  VSVAGLVLVRQRPG--KGNA-IFLTLEDDKAVANVIFW 1013


>gi|240141426|ref|YP_002965906.1| error-prone DNA polymerase, DNA polymerase III, alpha subunit
            [Methylobacterium extorquens AM1]
 gi|240011403|gb|ACS42629.1| error-prone DNA polymerase, DNA polymerase III, alpha subunit
            [Methylobacterium extorquens AM1]
          Length = 1067

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 269/1039 (25%), Positives = 443/1039 (42%), Gaps = 76/1039 (7%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
             LQV + +S L GA S   +    +    PA+ +TD  +L   +   Q A   G++ ++G
Sbjct: 5    ELQVTTHFSFLRGASSPEELFSAASLLGIPALGVTDHGSLAGMVRAHQAAKVTGVRLVVG 64

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            C+LD+D   +                +++  +    Y RL  L+S        K   R+ 
Sbjct: 65   CRLDLDDLSSP---------------LLVYPTDRAAYGRLCRLLSLGKARGG-KGRCRLT 108

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRG 191
               L+E       +L     GP   A   +        L  FK LFG R    L  R R 
Sbjct: 109  WRDLEEWQEGFFAILLAEQPGP---ALPND--------LARFKGLFGARASCALTRRFRP 157

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTP 250
             D  R   +   A    +P VAT + L+         DV+  +    T+           
Sbjct: 158  DDADRLDALAAAARAARVPTVATGDILYHVAGRRRLQDVVTCIRLGLTIDRAGFAKERHA 217

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            D +LK  +E   +F+  PEAL    E+A  C F L   A   P    ++        +  
Sbjct: 218  DRFLKPPAETARLFARFPEALARAGEVAAACRFSLDDLAYTYPTESREDG----LSPQER 273

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L     AG   R   G        +   ++L  EL++I R+ ++ YFL V   + +A + 
Sbjct: 274  LDVLTWAGAARRYPAGV------PEAVTRQLHHELDLIGRLAYAPYFLTVESIVAFANRE 327

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I    GRGS A S   + L IT IDP R +LLFERF++  R   PD D+DF  +RR+EV
Sbjct: 328  KIL-CQGRGSAANSAVCFCLGITSIDPTRQNLLFERFVSEARREPPDIDVDFEHERREEV 386

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+++   YG  R A        +++ ALR+VG+ + +P      L ++  +  +  V   
Sbjct: 387  IQWIFQTYGRHRSALTAIVSRFRSRGALREVGKVMGLPEDVTGALNRMTWSWSSEGVG-- 444

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                + R       D  +   L I+++L G  RH S H  G V+    L +LVP+     
Sbjct: 445  --ERELRELNLNPDDRRLRLTLAIARELIGTPRHLSQHPGGFVLTLDRLDELVPVEPAAM 502

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
            +D  V +++   I+    +K D LGL  L  L+++ D LA+ +    DL+ IP  D  T+
Sbjct: 503  ADRQVIEWDKDDIDALKFMKVDVLGLGMLGCLRRAFDLLAEVKNDPHDLASIPSKDEPTF 562

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNG 667
             ++    TLG+FQ+ES      L  M+P    D++  V++ RPGPI   +V+    R+ G
Sbjct: 563  AMIRRADTLGVFQIESRAQMAMLPRMKPKEFYDLVIEVAIVRPGPIQGDMVHPYLRRREG 622

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMD 726
             E++    P +  +L++T GV ++QEQ MQ+A + +G+S +EAD LRR+M        + 
Sbjct: 623  LEEVTYPTPELKAVLEKTLGVPLFQEQAMQVAMVGAGFSATEADELRRSMATFKFTGGVH 682

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + + R + G   NG ++  A   F+ L  F  YGF +SHAA++A+++Y ++WMK H+P  
Sbjct: 683  RFQNRLVEGMVANGYARDFAERTFKQLEGFGSYGFPESHAASFALLAYASSWMKCHHPDV 742

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-------NRIYYSL 839
            F AA +  +        +  +DAR   +++ P  VN    D  +           +   L
Sbjct: 743  FCAALLNAQPMGFYAPAQIVRDARAHGVEVRPLDVNFSQWDCTLESLGSGRKLFAVRLGL 802

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
                G+     + ++ A   +PF SL +   R     +    L  LV A A    G +R 
Sbjct: 803  RLASGLAERDGQRLVAARGGRPFASLPELADRA---GIPAASLTCLVRADAFRSLGLNRR 859

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI-----TLEKFSVENSSVRFEN 954
            +   ++  ++                +FA        +              ++      
Sbjct: 860  EAAWAVKALR-----------PDPLPLFAALSAPIQAEPAQTAEPAVSLPAMSAGGEVVA 908

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +    G     HPL   +  L  +G +          G  I +A +V+ +Q+  + KG+ 
Sbjct: 909  DYCANGLSLRAHPLAFLRETLTTLGARPCAALERVGNGGAIVVAGIVLMRQRPGSAKGTM 968

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
              ++T  +          P
Sbjct: 969  --FMTLEDETGIANLIVRP 985


>gi|319780655|ref|YP_004140131.1| DNA polymerase III subunit alpha [Mesorhizobium ciceri biovar
            biserrulae WSM1271]
 gi|317166543|gb|ADV10081.1| DNA polymerase III, alpha subunit [Mesorhizobium ciceri biovar
            biserrulae WSM1271]
          Length = 1115

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 254/1059 (23%), Positives = 441/1059 (41%), Gaps = 91/1059 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +    + S++S L GA     ++         AI + D N +   +   Q+A    +   
Sbjct: 9    YAEFGIQSNFSFLRGASKPEELVVAAKLLGFSAIGLADRNTVAGVVRAWQQAKVEKLSYH 68

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSV 129
             GC+L  D                  P I+      +G+  L  ++++  L  +  K + 
Sbjct: 69   PGCRLVFDDG---------------TPDILAYPQDRKGWGHLCRMLTQANLRDENEKGAT 113

Query: 130  RICLSWLQEIGTEG-LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
             +    L E G    L +L G              +Q +   L   K  FG  L + +  
Sbjct: 114  LLQRGDLLEWGDLMSLAVLPG----------LSTGAQDSLALLGELKGRFGRNLRLGVSP 163

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQKDRP 246
             + G DR+R  Q   LA +  +PL+ATN+ L+ + E     DVL A+  +T V     + 
Sbjct: 164  DYAGNDRFRIEQAATLAESAGIPLMATNDVLYHTAERRPLQDVLTAIRLNTPVAEVGLQL 223

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +LK   EM  +F   P+AL  T+  A+  +F L       P    +        
Sbjct: 224  SANAERHLKPPMEMGRLFRRHPQALAETLRFAQELTFSLGDLQYNYPDEPTESGLG---- 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + EL   A  G   R   G            +R++ EL +I R+ ++ YFL V D +++
Sbjct: 280  PQAELARLAREGAANRYPAGV------PDSVTKRIEEELALIERLNYARYFLTVYDIVKF 333

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I    GRGS A SV  + + IT++ P +   LFERF++ +R   PD D+DF  ++
Sbjct: 334  ARSKDIL-CQGRGSAANSVVCFCIGITEVGPEKIDSLFERFISEERNEPPDIDVDFEHEK 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+ VI+Y+  KY  +R A      S + ++ALR+V +A+ +       L   I       
Sbjct: 393  RETVIQYIYEKYSGKRTALAAAVISYRGRSALREVSKAMGLSEDVRASLSGSIWGWSTSE 452

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +       ++R       DP    ++E + ++ G  RH S H  G VI    L ++VP+ 
Sbjct: 453  LG----EKEARAGGLDRTDPVSRHVMERANEIMGFPRHLSQHVGGFVITRDRLDEIVPIV 508

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--------VKVDL 598
            +    +  + +++   ++   ++K D L L  LT LQ++   L                L
Sbjct: 509  KTAMDERKMVEWDKDDLDAVKILKVDVLALGMLTCLQRAFTLLTDHYPNARDEYGQPYVL 568

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P +D + Y ++    TLG+FQ+ES      L  ++PD   D++  V++ RPGPI   
Sbjct: 569  ATLPPEDRQVYKMICRADTLGVFQIESRAQMSMLPRLKPDNFYDLVIEVAIVRPGPIQGD 628

Query: 659  VVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V+    R+ GKE+     P ++ +LK+T GV ++QEQ M IA +  G+   EAD LRRA
Sbjct: 629  MVHPYLRRRQGKEQAEYQKPELEAILKKTLGVPLFQEQAMNIAIVAGGFKPGEADELRRA 688

Query: 717  MGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M    +   +   ++R I+G    G +K  A   F+ +  F +YGF +SHAA++A++ Y 
Sbjct: 689  MATFKRTGTIGNYRDRMINGMVGKGYTKDFAERCFKQIEGFGEYGFPESHAASFALLVYA 748

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD--- 832
            + W KT YP  F AA +  +     +  +  +DA    + I    VN    D  +     
Sbjct: 749  SCWFKTFYPDVFCAAILNSQPMGFYQPAQLVRDASDHGVDIRDVDVNFSVWDCTLEKAPF 808

Query: 833  -------------------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                               + +      IKG+        +E      + S+ D   R  
Sbjct: 809  DPARILPRHAEMRDVIETKHAVRLGFRQIKGLSKERMEAFVEGRGSG-YVSVRDVWLR-- 865

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
               L+   +E L  A A    G  R + L ++  +       +     +   +F      
Sbjct: 866  -SGLDVGEIEKLAQADAFRSLGLDRREALWAVRAL-------DGKSAAERLPLFDQPALR 917

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
              +     +           ++ R LG     HP+   +  L + G+       +   G 
Sbjct: 918  LRELEPETRLPKMPLGEHVIHDYRALGLSLKAHPVAFLRERLDRAGVIPNANLPSVRDGR 977

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + +A +V+ +Q+    KG+   ++T  +        F+
Sbjct: 978  RVSVAGLVLVRQRPG--KGNA-IFLTLEDDKAVANIIFW 1013


>gi|300361563|ref|ZP_07057740.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus gasseri
            JV-V03]
 gi|300354182|gb|EFJ70053.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus gasseri
            JV-V03]
          Length = 1038

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 319/1025 (31%), Positives = 518/1025 (50%), Gaps = 39/1025 (3%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V LQ  SS++LLE    + ++ +        A+A+TD N  +  + F + A   GI+P++
Sbjct: 4    VSLQNLSSFTLLESPTKVKDLAENAKKKGYSALALTDVNITYGLVNFYKAAKETGIKPLL 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVR 130
            G QL I+          G         ++++    +GY+ ++ L S + L  + G++   
Sbjct: 64   GMQLRIN----------GLVDQANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENV 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG--DRLYVNLQR 188
            + L  L++     +I+        + +    N+ ++    + T K        +Y+ +  
Sbjct: 114  LELEELKKYLGHLVIITPSNIHSEL-KMLQANNPKMGANYIRTLKDSVPTSSSIYLGVYA 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +G   Y    +  LA   EL L A  +  +L+  +      L A+  +T +   ++   
Sbjct: 173  DQGQQEYIN-YLRSLATQFELLLTAVEDGQYLNRNEQFLRRTLQAIKSNTHLENIEQLAK 231

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                +    SE + +       +E+ +E A +   I           + K   +     +
Sbjct: 232  QAGSHYLKNSEELQVN-YRKFEIEDALENAEKIGQICSAQITFQDPQLPKFKQNKFPTSK 290

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L + A  GL  R        G   + Y+ RLD+EL VI  M F  YFLIV D + +A 
Sbjct: 291  EYLHSLAQNGLAKRFK------GRIPEKYQARLDYELKVINEMGFDDYFLIVWDVMNFAH 344

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              +I  GPGRGS AGS+ +YAL IT++DPL ++LLFERFLNP R  MPD D+D   +RRD
Sbjct: 345  SVHITTGPGRGSAAGSLVSYALRITEVDPLEYNLLFERFLNPARQQMPDIDLDIPDNRRD 404

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  KYG    AQI+TFG+L AK  L+DV R   +   +  R    IP+       
Sbjct: 405  EVIKYMFEKYGMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAIPHAKGKITL 464

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A       +     +     L   ++ LE L RH S HAAG+VI D  L+++V +   
Sbjct: 465  AEAYQKSKELQLLVNTNAFSKILFATAEHLENLPRHYSIHAAGLVITDDSLAEIVGLQ-A 523

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
                +PVTQ     +E  GL+K DFLGL+ LT+L   +  L   GV++D + IP +D ET
Sbjct: 524  GPLGIPVTQQTKLNVESLGLLKIDFLGLRNLTILGNIIAALKSEGVEIDPNQIPLNDQET 583

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T  +FQ ES G+++ LE + PD  EDI+A+ +LYRPGP++NI  + NRK+GK
Sbjct: 584  LALFQRGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPMNNIGHFINRKHGK 643

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EK+    P +  +L  T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK  + + K+
Sbjct: 644  EKVQYPDPSLKKILGPTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSKKNADVIQKE 703

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E+FI GA K G  K IA  +++ +A+FA+YGFN+SHA AY+ I++  A+ K HYP  F 
Sbjct: 704  REKFIQGAVKLGRRKEIAEQVYDYIAQFANYGFNRSHAVAYSKIAFWLAYFKVHYPGAFY 763

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             + +   + N  KI ++   A++  I+ +PP +     DF + + +I   L A++G+ + 
Sbjct: 764  LSLLNSNIGNRNKIAQYLMQAQEAGIKTLPPDIENSKADFSLENGKILVGLKAVRGLRSD 823

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
              + I+E    +P  S+ DF  ++D+  L+   + +L+ AGA D    +R +LL+   ++
Sbjct: 824  LLKQILEI--KRPIKSMTDFLWKIDNNLLSADAIANLIKAGAFDRLAPNRNELLKINKDL 881

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +  +    N      ++F     T   KI  EK     ++ +   E   +GF    +P+
Sbjct: 882  VESVKMAGSN-----LSLF----ETLEPKIEEEKMP--TAAEKSAMEVEAMGFSTGINPI 930

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
               +   RK   K  +      +G  +     ++  +Q  T+KG  + +  FS+ + + +
Sbjct: 931  IAVQKYARKYNAKRLQAFENNEQGIAV---GKLMKIKQITTKKGDNMAFAVFSDSSGDKD 987

Query: 1029 ANFFP 1033
               FP
Sbjct: 988  FTIFP 992


>gi|256045858|ref|ZP_05448733.1| error-prone DNA polymerase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256112572|ref|ZP_05453493.1| error-prone DNA polymerase [Brucella melitensis bv. 3 str. Ether]
 gi|260563148|ref|ZP_05833634.1| error-prone DNA polymerase [Brucella melitensis bv. 1 str. 16M]
 gi|265992274|ref|ZP_06104831.1| error-prone DNA polymerase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994014|ref|ZP_06106571.1| error-prone DNA polymerase [Brucella melitensis bv. 3 str. Ether]
 gi|71151818|sp|Q8YEK2|DNAE2_BRUME RecName: Full=Error-prone DNA polymerase
 gi|260153164|gb|EEW88256.1| error-prone DNA polymerase [Brucella melitensis bv. 1 str. 16M]
 gi|262764995|gb|EEZ10916.1| error-prone DNA polymerase [Brucella melitensis bv. 3 str. Ether]
 gi|263003340|gb|EEZ15633.1| error-prone DNA polymerase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 1077

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 252/1046 (24%), Positives = 432/1046 (41%), Gaps = 83/1046 (7%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPII 71
              S++S L GA     ++++  A     I I D N L   +    +       +G +  I
Sbjct: 9    AASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQWKDIRKESGFRLFI 68

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+L                     P +V+       Y +L  L++        K    +
Sbjct: 69   GCRLSFIDG---------------TPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGECHL 113

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHR 190
              + L     +  I +        D A           RL    +     +++ L   H+
Sbjct: 114  EWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTMPHQ 163

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VT 249
            G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R     
Sbjct: 164  GQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLEKN 223

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + +LK   EMV +F D PEA+  T +     +F L       P           K  + 
Sbjct: 224  AERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KTAQQ 279

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L +    G         I         +  ++ EL +IAR+++  YFL V D +  A++
Sbjct: 280  HLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTHARE 334

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +RR+E
Sbjct: 335  KGIL-CQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHERREE 393

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       +  
Sbjct: 394  VMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGGIDR 453

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+    
Sbjct: 454  QHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIGPAA 509

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD------LSLIPF 603
                   +++   I++ GL+K D L L  LT ++K+ D + Q   ++       L+ +P 
Sbjct: 510  MDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLASLPR 569

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
             D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+  
Sbjct: 570  KDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMVHPY 629

Query: 664  RKNGKEKIVSIHP----------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             +    +     P           +  +L +T+GV ++QEQ M+IA   + ++  EA+ L
Sbjct: 630  LRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEANQL 689

Query: 714  RRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM    K   +   +++ I G    G  +T A N F  +  F +YGF +SHAA++A +
Sbjct: 690  RRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASFAHL 749

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  + +
Sbjct: 750  VYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNILEE 809

Query: 833  N-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +      I G        ++    + P+ ++ED   R+   +L+RR    L  
Sbjct: 810  TPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRL---RLDRRAFTLLAD 865

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            A A       R   L ++  +      +          +F     +   +    K     
Sbjct: 866  ADAFGSLDIDRRAALWAVRRLPNDETLL----------LFRAAAASELAQEPRTKLPEMA 915

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +S     +         GHPL   +  L   G+           G  +++A +V  +Q+ 
Sbjct: 916  ASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVRQRP 975

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + KG  + ++T  +         +P
Sbjct: 976  GSAKG--VVFLTIEDETGIANIVIWP 999


>gi|325068677|ref|ZP_08127350.1| DNA polymerase III, alpha subunit [Actinomyces oris K20]
          Length = 1135

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 302/1128 (26%), Positives = 470/1128 (41%), Gaps = 147/1128 (13%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     +  L  HS+YS L+GA   +++          A+A+TD + +   ++ +Q   A
Sbjct: 1    MTGRHRYAELHAHSAYSFLDGANEPDDLASAAVELGLEALALTDHDGVPGIVKHAQAGRA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+  I G +L +                     + +L     GY+RL+  +S+  L   
Sbjct: 61   YGLPTIHGTELTLADGS----------------HLPVLARNPVGYRRLVSAISQHNLDAG 104

Query: 125  GKQSVRICLSWLQ-----------EIGTEGLIMLTGGSSGPIDRAFFFN------SSQVA 167
             +Q      + L            E  +   ++LTG ++GP+ RA            + A
Sbjct: 105  HRQEPAHDPTALASALRSDPTDQTEAASGSCLVLTGTANGPLRRALGDPRRPDTWDLKAA 164

Query: 168  EKRLLTFKKLF--GDR-----------------------LYVNLQRHRGY-DRYRESQVV 201
            +  L    +LF   DR                       L V L    G  D      + 
Sbjct: 165  DACLGHLTELFAAPDRGRPFDAGPTTTAHRQVEGDAAIGLAVELTLDGGPTDAALTDALT 224

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            +LA+ H LPLVAT         D    DVL A    T +            +L+   +M 
Sbjct: 225  RLAHDHRLPLVATGAVRCARPTDARLADVLTATRLVTDLEGARGHLPAIGRWLRGAQDMA 284

Query: 262  SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
             +    P+A++   E+A   +F L + AP LP     E         + LR     G   
Sbjct: 285  LLHRRRPDAVDLAAELASDLAFDLSLIAPDLPDADVPEG----HTPASWLRELTRQGATR 340

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
            R                + L+ EL VI  + F GYFLIV   +++  ++ I    GRGS 
Sbjct: 341  RYG-----TPQEHPRAWEVLNHELEVIESLGFPGYFLIVHAIVEFCTQSGIL-CQGRGSA 394

Query: 382  AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
            A S   YAL IT +D +R  +LFERFL+P R   PD D+D    RR+EVI++V ++YG E
Sbjct: 395  ANSAVCYALGITAVDAVRHQMLFERFLSPGRAGYPDIDLDIEACRREEVIQHVYSRYGRE 454

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
            R AQ+    S + ++A+RD  RAL  P    D   K +    +                 
Sbjct: 455  RAAQVANVISYRPRSAVRDAARALGHPAGVQDAWAKQMDRWASVRPGGLT---------- 504

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
              +D   + +L+I++KL  L RH   H  G+V+  RP++++ P+      D  V Q++  
Sbjct: 505  GQSDEVPEPVLDIAEKLLRLPRHLGVHPGGMVLCGRPVTEVCPVRWAAMDDRSVLQWDKD 564

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV------------------KVDLSLIPF 603
               +AGL+KFD LGL  LT L+ +   LAQRG                      L  +P 
Sbjct: 565  DCAEAGLVKFDLLGLGALTALRLAFTTLAQRGQTVPDAVTEGELRTSQSGRPWGLHTLPE 624

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVY 661
            +D   Y LLT   T+G+FQ+ES      L  ++P    DI+  V+L RPGPI       Y
Sbjct: 625  EDPAVYRLLTAADTVGVFQVESRAQMATLPRLRPQEFYDIVVEVALIRPGPIQGDAVNPY 684

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKK 720
              R+ G+E++  +H  + P L +T GV ++QEQ+MQIA   +G+S +EAD LR+AM  K+
Sbjct: 685  IRRRLGREEVTYLHGSLKPALTKTLGVPLFQEQLMQIAVDAAGFSPAEADSLRQAMGAKR 744

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              E MD  +++ I+G    GI    A  I+  L  FA++GF +SHA ++A + Y +AW+K
Sbjct: 745  SIERMDALRDKLIAGMRSRGIDAPTAETIYSKLRSFAEFGFPESHAFSFAYLVYASAWLK 804

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--------- 831
               P +F A  +  +       +    DAR+  ++++P  +N   V   V          
Sbjct: 805  ARKPEDFYAGVLAAQPMGFWSPQSLVADARRHGVRVLPADINRSLVQATVEQREDHQEAG 864

Query: 832  ----------------------DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDF 868
                                  D  +   LA IKG+G   A+ I+ E  A  P+  L D 
Sbjct: 865  HSDQWEPLRPHPAALSSLDVHDDLAVRLGLAPIKGLGERAAQAIVTERRAHGPYRDLADL 924

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK-----H 923
              RV    L+R  LESL  +GALD  G  R Q L +   +                    
Sbjct: 925  ARRVS---LSRSRLESLAVSGALDSLGVERRQALWAAGVLSDEHGRRRGASRRGQGAWYQ 981

Query: 924  ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
              +     G  +         +     R   +  + G    G PL + +PIL   G+   
Sbjct: 982  PTLPGTAVGAQA-----PTLPIMTDRERQAADLSLTGVSTQGSPLKLLRPILADDGVLSA 1036

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             +      G+ +R+A +V  +Q+  T  G  + ++   +         
Sbjct: 1037 ADLADQEHGSRVRVAGVVTHRQRPHTASG--MIFLNLEDETGLLNVVC 1082


>gi|17988159|ref|NP_540793.1| error-prone DNA polymerase [Brucella melitensis bv. 1 str. 16M]
 gi|17983918|gb|AAL53057.1| DNA polymerase iii, alpha chain [Brucella melitensis bv. 1 str. 16M]
          Length = 1078

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 252/1046 (24%), Positives = 432/1046 (41%), Gaps = 83/1046 (7%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPII 71
              S++S L GA     ++++  A     I I D N L   +    +       +G +  I
Sbjct: 10   AASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQWKDIRKESGFRLFI 69

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+L                     P +V+       Y +L  L++        K    +
Sbjct: 70   GCRLSFIDG---------------TPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGECHL 114

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHR 190
              + L     +  I +        D A           RL    +     +++ L   H+
Sbjct: 115  EWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTMPHQ 164

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VT 249
            G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R     
Sbjct: 165  GQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLEKN 224

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + +LK   EMV +F D PEA+  T +     +F L       P           K  + 
Sbjct: 225  AERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KTAQQ 280

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L +    G         I         +  ++ EL +IAR+++  YFL V D +  A++
Sbjct: 281  HLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTHARE 335

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +RR+E
Sbjct: 336  KGIL-CQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHERREE 394

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       +  
Sbjct: 395  VMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGGIDR 454

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+    
Sbjct: 455  QHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIGPAA 510

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD------LSLIPF 603
                   +++   I++ GL+K D L L  LT ++K+ D + Q   ++       L+ +P 
Sbjct: 511  MDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLASLPR 570

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
             D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+  
Sbjct: 571  KDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMVHPY 630

Query: 664  RKNGKEKIVSIHP----------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             +    +     P           +  +L +T+GV ++QEQ M+IA   + ++  EA+ L
Sbjct: 631  LRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEANQL 690

Query: 714  RRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM    K   +   +++ I G    G  +T A N F  +  F +YGF +SHAA++A +
Sbjct: 691  RRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASFAHL 750

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  + +
Sbjct: 751  VYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNILEE 810

Query: 833  N-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +      I G        ++    + P+ ++ED   R+   +L+RR    L  
Sbjct: 811  TPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRL---RLDRRAFTLLAD 866

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            A A       R   L ++  +      +          +F     +   +    K     
Sbjct: 867  ADAFGSLDIDRRAALWAVRRLPNDETLL----------LFRAAAASELAQEPRTKLPEMA 916

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +S     +         GHPL   +  L   G+           G  +++A +V  +Q+ 
Sbjct: 917  ASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVRQRP 976

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + KG  + ++T  +         +P
Sbjct: 977  GSAKG--VVFLTIEDETGIANIVIWP 1000


>gi|225851611|ref|YP_002731844.1| error-prone DNA polymerase [Brucella melitensis ATCC 23457]
 gi|256264881|ref|ZP_05467413.1| error-prone DNA polymerase [Brucella melitensis bv. 2 str. 63/9]
 gi|225639976|gb|ACN99889.1| DNA polymerase III, alpha subunit [Brucella melitensis ATCC 23457]
 gi|263095335|gb|EEZ18962.1| error-prone DNA polymerase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408081|gb|ADZ65146.1| error-prone DNA polymerase [Brucella melitensis M28]
 gi|326537797|gb|ADZ86012.1| DNA polymerase III, alpha subunit [Brucella melitensis M5-90]
          Length = 1077

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 252/1046 (24%), Positives = 432/1046 (41%), Gaps = 83/1046 (7%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPII 71
              S++S L GA     ++++  A     I I D N L   +    +       +G +  I
Sbjct: 9    AASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQWKDIRKESGFRLFI 68

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+L                     P +V+       Y +L  L++        K    +
Sbjct: 69   GCRLSFIDG---------------TPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGECHL 113

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHR 190
              + L     +  I +        D A           RL    +     +++ L   H+
Sbjct: 114  EWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTMPHQ 163

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VT 249
            G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R     
Sbjct: 164  GQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLEKN 223

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + +LK   EMV +F D PEA+  T +     +F L       P           K  + 
Sbjct: 224  AERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KTAQQ 279

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L +    G         I         +  ++ EL +IAR+++  YFL V D +  A++
Sbjct: 280  HLYDLVWEGAVRHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTHARE 334

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +RR+E
Sbjct: 335  KGIL-CQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHERREE 393

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       +  
Sbjct: 394  VMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGGIDR 453

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+    
Sbjct: 454  QHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIGPAA 509

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD------LSLIPF 603
                   +++   I++ GL+K D L L  LT ++K+ D + Q   ++       L+ +P 
Sbjct: 510  MDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLASLPR 569

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
             D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+  
Sbjct: 570  KDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMVHPY 629

Query: 664  RKNGKEKIVSIHP----------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
             +    +     P           +  +L +T+GV ++QEQ M+IA   + ++  EA+ L
Sbjct: 630  LRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEANQL 689

Query: 714  RRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRAM    K   +   +++ I G    G  +T A N F  +  F +YGF +SHAA++A +
Sbjct: 690  RRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASFAHL 749

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    D  + +
Sbjct: 750  VYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWDNILEE 809

Query: 833  N-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +      I G        ++    + P+ ++ED   R+   +L+RR    L  
Sbjct: 810  TPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRL---RLDRRAFTLLAD 865

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            A A       R   L ++  +      +          +F     +   +    K     
Sbjct: 866  ADAFGSLDIDRRAALWAVRRLPNDETLL----------LFRAAAASELAQEPRTKLPEMA 915

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +S     +         GHPL   +  L   G+           G  +++A +V  +Q+ 
Sbjct: 916  ASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAGVVTVRQRP 975

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + KG  + ++T  +         +P
Sbjct: 976  GSAKG--VVFLTIEDETGIANIVIWP 999


>gi|282864426|ref|ZP_06273482.1| DNA polymerase III, alpha subunit [Streptomyces sp. ACTE]
 gi|282560913|gb|EFB66459.1| DNA polymerase III, alpha subunit [Streptomyces sp. ACTE]
          Length = 1154

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 276/1062 (25%), Positives = 448/1062 (42%), Gaps = 62/1062 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL   S +SL  GA     + ++ A  +  A+A+TD + L   + F++    AGI+
Sbjct: 2    PGFTHLHTVSGFSLRYGASHPERLAERAAEREMDALALTDRDTLAGTVRFARACEDAGIR 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTP----------FPTVPSIVLLVST-AEGYQRLIELVS 117
            P+ G +L +          +   P            + P +  L    A G+  L  LV+
Sbjct: 62   PLFGTELAVAPFAGGGGAGRTHRPRTPVRGGAFVDESAPRVTFLARDGAHGWAELCRLVT 121

Query: 118  RMYLLDQG---KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
              +  D G        +  + L     EGL +L G  +  +  A        A   L  +
Sbjct: 122  AAHAPDMGAADTGQPLVGRAAL---PAEGLTVLLG-PASEVGAALAAGRPDRAAALLAPW 177

Query: 175  KKLFGDRLYVNLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            ++L+GD L +    H             ++ V  A    +  V TN   +         D
Sbjct: 178  RELYGDALRLEAVHHGRAGTGPGSLRLAARTVGFAADQGVRAVLTNAVRYADPGQGPVAD 237

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
            VL +      V  +  P  + + +LK+   M      +  A         R    L    
Sbjct: 238  VLDSARRLVPVDPRRSPLDSGERWLKDARAMRETAERITSAAGLGPGAGERL---LAETR 294

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY----------HAQDYRQ 339
                       DD+            + G E R AQ  +A               +DY +
Sbjct: 295  HTADACRVDPVDDLGLGSV-HFPEPHLVGAERRTAQRVLASRAAAGMVLRGLDGRRDYWE 353

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            R+  EL++IA   F+ YFL VA  +   K   I V   RGSGAGS+  + L I   DP+ 
Sbjct: 354  RMHHELDIIAHHGFASYFLTVAQVVDDVKGMGIRVA-ARGSGAGSLVNHLLGIAHADPVE 412

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              LL ERFL+  R  +PD DID    RR EV R +  ++G ERVA +    + + + A+R
Sbjct: 413  HGLLMERFLSKRRFVLPDIDIDVESARRLEVYRAIIGRFGAERVATVSMPETYRVRHAIR 472

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
            DVG AL M  ++ DRL K  P+  A      A+ +    RE         RL E+ + L+
Sbjct: 473  DVGAALSMDPAETDRLAKAFPHIRARDA-RAAMEELPELREVAGRKERYGRLWELVEALD 531

Query: 520  GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
             L R  + H  G+++ D  L +  P+        P+ QF+   +E  GL+K D LG++  
Sbjct: 532  ALPRGIAMHPCGVLLSDDSLLRRTPVVPTSGEGFPMAQFDKDDVEHLGLLKLDVLGVRMQ 591

Query: 580  TLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
            + +  ++       G +VDL  +P DD ETY L+ +  TLG FQ+ES G R  +  +QP 
Sbjct: 592  SAMAHAVTELERASGQEVDLDAVPPDDPETYRLIKSTETLGCFQIESPGQRDLVGRLQPA 651

Query: 639  CIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
               D++  +SL+RPGP+   +   +   ++G+  +   HP ++  L++T GV+++ EQ++
Sbjct: 652  TFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRYPHPDLEGPLRDTYGVVVFHEQII 711

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            ++  +++G    EAD +RR +     E   + K  F   A++ G    +    +E++  F
Sbjct: 712  EMVDIMTGCGRGEADRVRRGLSD--PESQGRIKVWFALRAAERGYGAEVVDRAWEIVEAF 769

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
              YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +    DAR+  + +
Sbjct: 770  GSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARRRGVPV 828

Query: 817  MPPSVNTPCVDFKVG------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
            +P  VN       +          +  +L+ + G+       I    A +P+ SL DF  
Sbjct: 829  LPLDVNRSAAAHGIELVSEKGVWGLRLALSDVHGISEAEVARI---EAGQPYSSLLDFWQ 885

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
            R       +   E L   GALD FG +R  LL  L  + +  +          +      
Sbjct: 886  RARP---GKPAAERLAQVGALDAFGANRRDLLLHLSELHRAQRGAGARGGAGAQLPLGD- 941

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
             G  +  + L      N + R   E  VL    S H +  +   L ++G    +      
Sbjct: 942  -GHRTGTVGLPDL---NDAERLSAELGVLSMDVSRHLMGDHHTFLEELGALSAKRLREAA 997

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             G  + +A    + Q    R G R+ + T  +     +  FF
Sbjct: 998  HGETVLVAGAKAATQTPPVRSGRRVVFTTLDDGTGLVDLAFF 1039


>gi|314933855|ref|ZP_07841220.1| DNA polymerase III, alpha subunit [Staphylococcus caprae C87]
 gi|313654005|gb|EFS17762.1| DNA polymerase III, alpha subunit [Staphylococcus caprae C87]
          Length = 1067

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 318/1026 (30%), Positives = 524/1026 (51%), Gaps = 85/1026 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H++Y LL  +L + ++++K   +   A+AITDT+ L+   +F     A  I PI 
Sbjct: 3    AHLNIHTAYDLLNASLKIEDVVNKAKNEGYRALAITDTHVLYGFPKFYDACIAKDIHPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +        T             V+L    EG + L +L S + + ++      +
Sbjct: 63   GMTITLTDGLYTVET-------------VVLAQNNEGLKALYQLSSAIKMKEKE----EV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRH 189
             L WL+      +I+                  +  +       + F D   +Y+    H
Sbjct: 106  PLEWLKRYDKNLIII-----------------FKDIDNTHKQIIEAFDDKIHVYI---NH 145

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               D     +            V   ++ +L+ ED +    L A+  ++ +   +  +  
Sbjct: 146  TSNDIVNRKK------------VWLKSARYLNREDADTISALQAIKDNSKLDIINDSKDF 193

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +H+   +           +  +NT +I   C   L  H  +LP+++  + +  +    +
Sbjct: 194  GEHFPDQKEF--EELEIDEKIKQNTEDIVDLCKAELVYHQSLLPQYVTPDGEVSKDYLWS 251

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L  K                  + + Y  RL  E  +I +M F  YFLIV+D +Q+AK 
Sbjct: 252  VLIRKLNE------------WNLNNEQYLNRLKHEYEIITKMGFEDYFLIVSDLMQYAKT 299

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            +++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++
Sbjct: 300  HDVMVGPGRGSSAGSLVSYLLEITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREK 359

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+YVQ KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     +  
Sbjct: 360  VIQYVQEKYGELHVSGIVTFGHLLARAVGRDVGRIMGFDETTLNEISKLIPHKLGITLDK 419

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                 +  F+     +   +   E+S+KLEGL RH STHAAGI+I D+PL +  P+    
Sbjct: 420  AY--QEEDFKSFVHRNHRNELWFEMSKKLEGLPRHTSTHAAGIIINDQPLYKYAPLTLGD 477

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHET 608
                 +TQ+ M   E+ GL+K DFLGL+ L+++ + ++ + +   V +D+  IPFDD   
Sbjct: 478  TG--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIVNQVKKDLDVDIDVEAIPFDDKNV 535

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++  
Sbjct: 536  FKLLSQGDTTGIFQLESEGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDP 595

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             K+  +H  ++ +LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +
Sbjct: 596  SKVEYLHNDLESILKSTYGVIIYQEQIMQIASKFANFSYGEADILRRAMSKKNRAVLENE 655

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            ++ F++GA +NG ++ I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K +YP  F 
Sbjct: 656  RQHFVNGAKQNGYNEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVYYPNYFY 715

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            A  ++  + + +K      +A+   + I+PP++N     +K     IY SL AIKGVG  
Sbjct: 716  ANILSNVIGSEKKTSAIIDEAKHQKLNILPPNINESHWYYKATSKGIYLSLGAIKGVGYQ 775

Query: 849  TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            + + I++    +  F    DF  R+  +  +R++LE+L+  GA D FG +R  LLQ++D 
Sbjct: 776  SVKTIVDERYNNGKFKDFFDFTRRIPKRVKSRKLLEALILVGAFDHFGKNRATLLQTIDQ 835

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +   A  VE++       +F       + K   E        +  + E+  LGFY S HP
Sbjct: 836  VLDTASDVEQDDM-----LFD----ILTPKQAYEDKEELPDKMLSDYEKEYLGFYISKHP 886

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            ++       K    G  +         I +     + +Q +T+ G  + +VT ++     
Sbjct: 887  VE---KEFDKKQYLGIYKLGNAQNHQPILV--QFDAIKQIRTKNGQNMAFVTLNDGMLLM 941

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 942  DGVIFP 947


>gi|297195254|ref|ZP_06912652.1| DNA polymerase III alpha subunit [Streptomyces pristinaespiralis ATCC
            25486]
 gi|197719664|gb|EDY63572.1| DNA polymerase III alpha subunit [Streptomyces pristinaespiralis ATCC
            25486]
          Length = 1175

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 266/1080 (24%), Positives = 447/1080 (41%), Gaps = 79/1080 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            + P F HL   S +S+  GA     +  + A     A+A+TD + L  A+ F       G
Sbjct: 6    RMPYFTHLHTVSGFSVRYGASHPERLAGRAAERGMDALALTDRDTLAGAVRFVTACAKEG 65

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKT--------PFPTVPSIVLLVSTAEGYQRLIELVSR 118
            ++P+ G  L +  +   +   + +            + P  V L     G+  L  +V+ 
Sbjct: 66   VRPLFGVDLAVGERARQEGPAERRRTPVRGGAFVDESAPRTVFLARDRRGWADLCRMVTA 125

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             +  D   +S  +          +GL +L G  S  +  A        A K L  +++ +
Sbjct: 126  AHATDP--RSPLLPWDD---NHGDGLTVLLG-PSSEVGGALAAGRPDRAAKLLAPWRERY 179

Query: 179  GDRLYVNLQRHRGYDR-----YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            GDRL + +  H G           ++ + LA    +  V TN   +         DVL A
Sbjct: 180  GDRLRLEVVHHGGGGTGPGSLRHAARTLGLAAEQGVRAVLTNAVRYADPGQGPVADVLDA 239

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
                  +  +              +  V        A        R  +   +  A  L 
Sbjct: 240  ARRLVPIDPRKGLDSGERWLKDPAAMAVLAGRVAEAAGFRRELAHRLLAMTEETAAECLV 299

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVI 348
               +          E  L        +        A   +      ++Y +R+  EL++I
Sbjct: 300  DPEDDLGIGSVHFPEPALVGAEYRTAQRVLASRAAAGMVLRGYDGRREYWERMHHELDII 359

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
            A   F+ YFL VA  +   K   I V   RGSGAGS+  + L I   DP+   LL ERFL
Sbjct: 360  AHHGFASYFLTVAQVVDDVKGMGIRVA-ARGSGAGSLVNHLLGIAHADPVEHGLLMERFL 418

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            +  R  +PD DID    RR EV R +  ++G ERVA +    + + + A+RDVG AL M 
Sbjct: 419  SKRRRVLPDIDIDVESARRLEVYRKIIGRFGEERVATVAMPETYRVRHAIRDVGAALSMD 478

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
             +++D+L K  P+  A        A+    RE        +R+ E+ + L+ L R  + H
Sbjct: 479  PAEIDKLAKSFPHIRARDARAAL-AELPELREVATESKRRERMWELVEALDALPRGVAMH 537

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
              G+++ D  L    P+        P++QF+   +E+ GL+K D LG++  + +  ++  
Sbjct: 538  PCGVLLSDASLLTRTPVVPTSGEGFPMSQFDKDDVEELGLLKLDVLGVRMQSAMAHAVAE 597

Query: 589  LAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            + +  G +VD+  +P  D  TY L+ +  TLG FQ+ES G R  +  +QP+   D++  +
Sbjct: 598  VRRATGEEVDVDAVPPGDPATYRLIRSTETLGCFQIESPGQRDLVGRLQPETFGDLVVDI 657

Query: 648  SLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            SL+RPGP+   +   +   ++G+      HP ++  L++T GV+++ EQ+++I  +++G 
Sbjct: 658  SLFRPGPVAADMVRPFIEARHGRAPARYPHPDLEGPLRQTYGVVVFHEQIIEILDIMTGC 717

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
               EAD +RR +     E   K K  F   A   G +  +    +E++  F  YGF K+H
Sbjct: 718  GRDEADRVRRGLSD--PESQGKIKTWFARNAGAKGYAPEVIGRAWEIIEAFGSYGFCKAH 775

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A A+AV +YQ+AW+K H+P  F A  +T +     K +    DAR+  + ++P  VN   
Sbjct: 776  AVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARRRGVPVLPLDVNRSA 834

Query: 826  VDFKVG---------------------------------DNRIYYSLAAIKGVGTTTARH 852
            V  ++                                     +  +L+ + G+    A  
Sbjct: 835  VAHRIELVSDDVSSRASAGAGGGSRGGSVPAADARSGQGRWGLRLALSDVHGISEAEAAR 894

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            I    A +P+ SL DF  R      +R V E L   GALD FG +R  LL  L  + +  
Sbjct: 895  I---EAGQPYSSLLDFWQRACP---SRPVAERLAQVGALDAFGANRRDLLLHLAELHRT- 947

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
                         +    +G  +  + L        + R   E  VLG   S H +  + 
Sbjct: 948  -RRGAASYGSQLPL---AQGQKTAPVGLPDLGD---AERLSAELGVLGMDASRHLMADHH 1000

Query: 973  PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              L ++G+   +       G  + +A    + Q    R G R+ + T  + +   +  FF
Sbjct: 1001 AFLAELGVLSAQRLRDAPHGRTVLVAGAKAATQTPPIRSGRRVIFTTLDDGSGLVDLAFF 1060


>gi|307328895|ref|ZP_07608064.1| DNA polymerase III, alpha subunit [Streptomyces violaceusniger Tu
            4113]
 gi|306885405|gb|EFN16422.1| DNA polymerase III, alpha subunit [Streptomyces violaceusniger Tu
            4113]
          Length = 1194

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 265/1090 (24%), Positives = 448/1090 (41%), Gaps = 91/1090 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL   S +S+  GA     +  + A     AIA+TD ++L  A+ F++    AG++
Sbjct: 2    PGFTHLHTASGFSMRYGAAHPERLAQRAAERGMDAIALTDRDSLAGAVRFARACERAGVR 61

Query: 69   PIIGCQLDIDMQD--------NLKMTNQGKTPFPTVPSIVLLVST-AEGYQRLIELVSRM 119
            P+ G  L +  +D               G     + P  V L    A G+  L  LVS  
Sbjct: 62   PLFGVDLAVRREDPEPGRTVRRRTPVRGGAFIDESTPRAVFLARDGAAGWAALCGLVSAA 121

Query: 120  Y--------LLDQGKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEK 169
            +            G     +    L         L +L G     + RA        A +
Sbjct: 122  HAGLTHSGSARTNGDGPPLLHWRDLVSDPGALAPLTVLLG-PDSDVGRALAAGRPDRAAR 180

Query: 170  RLLTFKKLFGDRLYVNLQRHR----GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEED 224
             +  + +LFGD L +    H     G    R  ++ +  A    +P V +N + +    +
Sbjct: 181  LIAPWHELFGDALRLEAVWHGRTGTGPGSLRLAARTLGFAADQGIPAVLSNAARYADPGE 240

Query: 225  YEAHDVLMAVAH---------STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTV 275
                DVL A              + S +   +   D        + +       A     
Sbjct: 241  GPVADVLDAARRLVPIDPRTPGALDSGERWLKGPLDMAKAAERIVEAAGMRRDAAHRLLE 300

Query: 276  EIARRCSFILQVHAPILPRFIEKECDD-----IQKEEENELRNKAVAGLEVRLAQGAIAK 330
            E  R  +  L      +        +       ++  E  LR+          A   +  
Sbjct: 301  ETRRTAAACLVDPEDHIGLGSVHFPEPRLVGAGRRSAERVLRS-------RCAAAMVLRG 353

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                +   +RL+ EL  I R+ F+ YFL VA  +   ++  I V   RGSGAGS   + L
Sbjct: 354  YDRDRVRWERLEDELRTIERLGFASYFLTVAQVVDDTRELGIRVA-ARGSGAGSFVNHLL 412

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             I   DP+   LL ERFL+  R ++PD DID    RR +V R +  ++G ERVA +    
Sbjct: 413  GIAHADPVANGLLMERFLSVRRAALPDIDIDVESARRLDVYRTIFERFGAERVATVSMPE 472

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            + + + A+RDVG AL M  ++VDRL K  P+  A        A+    R          +
Sbjct: 473  TYRVRHAVRDVGAALGMDPAEVDRLAKSFPHIRARDARAAL-AELPELRAVAAEQERFGK 531

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            L ++ + L+GL R  + H  G+++ D  L    P+        P++QF+   +E+ GL+K
Sbjct: 532  LWDLVEALDGLPRGIAMHPCGVLLSDAGLLARTPIVPTSGEGFPMSQFDKDDVEELGLLK 591

Query: 571  FDFLGLKTLTLLQKSLDFLAQRG----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
             D LG++  + +  ++  + +         D   +   D  TY L+ +  TLG FQ+ES 
Sbjct: 592  LDVLGVRMQSAMAHAVTEIRRTTGRVVDIDDPGQVRPGDPATYDLIRSTETLGCFQIESP 651

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKE 684
            G R  L  +QP    D++  +SL+RPGP+   +   + + ++G++     HP ++  L+E
Sbjct: 652  GQRDLLGRLQPTTFHDLVVDISLFRPGPVAADMVRPFIDARHGRKPARYPHPDLEDALRE 711

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T GV+++ EQ+++I  +++G     AD  RRA+    +    + +  F + A K G +  
Sbjct: 712  THGVVVFHEQIIKIVSIMTGCERDLADEARRALSNPER--QGRVRAWFHAEAEKRGYAPE 769

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            + +  +E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K + 
Sbjct: 770  VRLRTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RL 828

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVG--------------------DNRI--YYSLAAI 842
               DAR+  + I+P  VN     +++                     ++ I    +L+ +
Sbjct: 829  LLADARRRGVPILPLDVNRSGAAYRIELTSGDSRGISNKEDRRSKGNEDSIGVRLALSDV 888

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             G+       I    A +P+ SL+D   R       R V E L   GALD FG SR  LL
Sbjct: 889  HGISEAETERIA---AGQPYSSLQDLWLRAHP---GRPVAERLAQVGALDAFGTSRRDLL 942

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              +  + +  +   +        +        +           ++  R   E  +LG  
Sbjct: 943  LQIAELHRQQRGAARRDAEGQLPL------AETGPAAPAGLPDLDADERLGAELGILGMD 996

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             S H +  ++  L ++G    +       G  + +A    + Q    R G R+ + T  +
Sbjct: 997  VSRHLMGDHRDFLEELGAIPAKRLRDAPHGEVVLVAGAKAATQTPPIRSGRRVIFTTLDD 1056

Query: 1023 PAKEYEANFF 1032
                 +  FF
Sbjct: 1057 GTGLVDCAFF 1066


>gi|159046536|ref|YP_001542206.1| DNA polymerase III, alpha subunit [Dinoroseobacter shibae DFL 12]
 gi|157914295|gb|ABV95725.1| DNA polymerase III, alpha subunit [Dinoroseobacter shibae DFL 12]
          Length = 1116

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 272/1073 (25%), Positives = 444/1073 (41%), Gaps = 102/1073 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------- 63
            +  L V S+++ L GA     ++ + A     AIAITD N++   +              
Sbjct: 4    YAELCVTSNFTFLTGASHPEELVTRAAELGLKAIAITDRNSVAGVVRAFSALKELARLRE 63

Query: 64   ---------AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP------------SIVL- 101
                      AG  P++  +   D      M +      P +P             IVL 
Sbjct: 64   EARAASDGAEAG--PVVRSRQVTDHSSRQTMQHMPAGDAPRIPPDMVLPKLIPGARIVLT 121

Query: 102  --------LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEG--LIMLTGGS 151
                    L +    + RL  L+S        K    +    L + G EG  LI L    
Sbjct: 122  DSPVDWLALPADIAAWSRLTRLLSLGKRR-ATKGECHLTRKDLLDWG-EGMVLIALPPDP 179

Query: 152  SGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELP 210
                 RA   +        L    ++F  + ++    R+ G D  R  Q+ ++A    LP
Sbjct: 180  MEHPARASLSD--------LRHMLRIFPGQCFLGAAPRYDGRDPTRLDQLARIAQDTGLP 231

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTV-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            LVA    +          DVL  +       +  +R     +H LK+ +EM  +F   P 
Sbjct: 232  LVALGEVMMHRSSRRPLADVLTCLREGCTIDTIGERRLTNGEHRLKSPAEMARMFHRYPA 291

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            A+  T+EIA RC+F L        R+   +     +  +  L   +  GL  R  +G   
Sbjct: 292  AIRRTLEIADRCAFRLDD-----LRYQYPDEARDGEPAQARLERLSREGLHWRYPEG--- 343

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                      R+D EL +I  M ++ YFL V D + +A+   I    GRGS A SV  Y 
Sbjct: 344  ---PPARIVTRVDKELKLIGEMGYAPYFLTVHDIVAFARSKGIL-CQGRGSAANSVVCYL 399

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L +T++ P   +L+FERF++ +R   PD D+DF  +RR+EVI+++  +YG  R     T 
Sbjct: 400  LGVTEVPPESITLIFERFISKERGEPPDIDVDFEHERREEVIQWIYEQYGRHRAGLTATV 459

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
               +++AA+R+VG+ + +    V RL   I        S     D  R      AD  V 
Sbjct: 460  IHFRSRAAIREVGKVMGLSQDVVARLSGQIWGWS----SSAPGEDRMRDAGIDPADGRVA 515

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
               ++  ++ G  RH S H  G VI    L +L P+      D  V +++   I+  GL+
Sbjct: 516  LAAKLIGEIIGFPRHLSQHVGGFVITHGRLDELCPIENAAMEDRTVIEWDKDDIDALGLL 575

Query: 570  KFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K D L L  LT ++K+       R +++ L+ +P +D   Y +L     +G+FQ+ES   
Sbjct: 576  KVDVLALGMLTCIRKAFGLLDDHRHLQLTLANVPPEDPVVYDMLCKADAVGVFQVESRAQ 635

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQ 686
               L  MQP    D++  V++ RPGPI   +V+   NR+ GKEK+  + P +  +L  T 
Sbjct: 636  LNFLPRMQPRKFYDLVCEVAIVRPGPIQGGMVHPFINRRQGKEKVEDLGPAMMEVLGRTY 695

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTI 745
            GV ++QEQ MQIA + +G+S +EAD LRR++    +   +   +ERFISG          
Sbjct: 696  GVPLFQEQAMQIAVVAAGFSAAEADRLRRSLATFKRMGTIGAFRERFISGMLARSYEAGF 755

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A   F  +  F  YGF +SHAA++A + Y +AW+K H+P  F  A +  +        + 
Sbjct: 756  AERCFAQIEGFGSYGFPESHAASFARLVYISAWLKRHHPAVFTCALLNSQPMGFYAPAQL 815

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADK 860
             +DAR+  ++I   SVN    D  +         +      IKG+    A  I  A  + 
Sbjct: 816  VRDAREHGVEIRAISVNHSAWDCTLEPRGDGALALRLGFRQIKGMREEDANWIEAARGNG 875

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             +  +E    R   +      LE L    A    G +R   L +   +          R 
Sbjct: 876  -YPDVEGLWRRAGVRP---DALERLAEGDAFASLGLNRRDALWAARAL----------RG 921

Query: 921  NKHENIFAHE-KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                 +F  + +G    ++ L              +   L      HP+++ +P L +  
Sbjct: 922  PNPLPLFGADGEGGAEPEVALP---AMTLGQEVIEDYLALRLSLRAHPMELLRPRLPE-- 976

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +E          + +  +V+++Q+  T  G  + ++T  +         +
Sbjct: 977  SLPHERLDRAT--GRVTVTGLVITRQRPGTASG--VIFLTLEDETGVSNVVVW 1025


>gi|168994055|gb|ACA41595.1| DNA polymerase III subunit alpha [Lysinibacillus sphaericus C3-41]
          Length = 1020

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 351/1022 (34%), Positives = 539/1022 (52%), Gaps = 50/1022 (4%)

Query: 17   HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN-LFSALEFSQKACAAGIQPIIGCQL 75
            H+S  LL+  + L  ++  +   +  A AI   N  L+  L F +    A I  ++G  +
Sbjct: 2    HTSADLLKSTIRLEQLIPFLLEQKTQACAI--VNTKLYGLLPFCKAMQQAKIHAVMGLSV 59

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            ++   D             T   +VL   + EGYQ+L+++ S   + + G     +   W
Sbjct: 60   NVQWHD-------------TTLPLVLYAQSQEGYQQLLKISSAASIREDG----VLPWKW 102

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY 195
            L+      L +L+      +         +     +     LF    Y+ + R  G    
Sbjct: 103  LEGYAAGCLALLSSDDLAEL---------KDWHGVVSALAHLFQHHFYMGITRPGGVALA 153

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
             E+++V+      +PLVA  +  FL  ED+ A++V  A+     +           ++  
Sbjct: 154  NENELVEWCEGQRIPLVAVQSCYFLRPEDHFAYEVARAIDTGDKLGDTMLTAKLQGYFAP 213

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
               E  S F+D PE LE   ++   C  I+   +  +P+F     +      E+ L  +A
Sbjct: 214  TAQEWQSWFTDRPEWLETCGQMLASCRAIIPEMSVQMPKFPVPVGE----TAESLLVKEA 269

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
             +GLE R  Q  I  G     YR+RL +EL +I  M F+ YFL+VADF+++AK N I  G
Sbjct: 270  FSGLEERFNQLDIPYG-----YRERLRYELEIICSMGFADYFLVVADFMRFAKDNRILTG 324

Query: 376  PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
            PGRGS AGS+ AY+L IT +DPL + LLFERFLNP+R+S+PD DIDF   +R +VI+YV 
Sbjct: 325  PGRGSSAGSLVAYSLAITQVDPLAYGLLFERFLNPERISLPDIDIDFVDSKRHQVIQYVA 384

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
             KYG   VAQIITFG+L AKA  RDV R        ++++ K+IPN P   +  +A+ + 
Sbjct: 385  QKYGKGNVAQIITFGTLSAKAVARDVARVFGFGAEVLEKISKMIPNKPGITL-QKALEES 443

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
               +E    D    R  E++QKLEGL R++STHAAGIVI    L   VP+  D    +  
Sbjct: 444  YDLQEWLSEDHQHQRWFEVAQKLEGLPRNSSTHAAGIVIAPSSLVNTVPIE-DGHEGIYC 502

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTT 614
            TQ+ M  +E +GL+K DFLGL+ LT+L++         G  +D   IP  D +T+ LL +
Sbjct: 503  TQWPMGDVEASGLVKMDFLGLRNLTILEQIRWSIYKAGGPWIDFERIPMHDEKTFQLLQS 562

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
              T GIFQLES GM+QAL  + P    DI+A+ +LYRPGP++ I VY  RK GKE +V  
Sbjct: 563  GDTSGIFQLESEGMKQALRDIHPTQFLDIVAVNALYRPGPMEFIPVYARRKAGKELVVMP 622

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            HP+++P+L+ET GVI+YQEQ+++IA +L+G+S+ +AD+LRRA+ KK ++ +++Q+  F+ 
Sbjct: 623  HPVLEPILQETFGVIVYQEQIIKIASVLAGFSMGQADLLRRAVSKKNRQVLEEQQVTFVQ 682

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            GA K G  + +A  ++EL+ +FADYGF KSHA AY++ISYQ A++K H+P  F AA ++ 
Sbjct: 683  GALKQGYDQHVATEVYELIVRFADYGFPKSHAVAYSIISYQMAYLKAHFPQSFYAALLSN 742

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
               NV+KI++  Q+A+   I   PPS+      F V    I YSLA IKGV  T    I 
Sbjct: 743  ATGNVDKIQQLVQEAKDKGIPFYPPSLKDSTKYFTVEQEGIRYSLAGIKGVPHTFIESIN 802

Query: 855  EASADKP---FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
                  P   + +L D    + ++    +V+ESL++AGALD     R  L+ ++D   K+
Sbjct: 803  TLRQTNPQALY-NLFDLAVALSAQHFKPKVIESLIYAGALDYLEKDRAVLIMTIDAALKH 861

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
            A+ +  N         +        K    +        +  +E+  LGFY S HP+   
Sbjct: 862  AELLRPNEDIDI----STATEFNFGKPKYMQVDDMPQKEKLIHEKESLGFYISAHPVTQE 917

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +P    +      E      G  +++  ++   ++ +T+KG ++ +V   +      A  
Sbjct: 918  RPYWADVNCTS-RELKQMRDGTYVKMIGVMEEVKKIRTKKGEQMAFVQLQDEHGSVSATL 976

Query: 1032 FP 1033
            FP
Sbjct: 977  FP 978


>gi|116629535|ref|YP_814707.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri ATCC 33323]
 gi|238852685|ref|ZP_04643095.1| DNA polymerase III subunit alpha [Lactobacillus gasseri 202-4]
 gi|311110823|ref|ZP_07712220.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri MV-22]
 gi|116095117|gb|ABJ60269.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus
            gasseri ATCC 33323]
 gi|238834831|gb|EEQ27058.1| DNA polymerase III subunit alpha [Lactobacillus gasseri 202-4]
 gi|311065977|gb|EFQ46317.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri MV-22]
          Length = 1038

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 316/1025 (30%), Positives = 518/1025 (50%), Gaps = 39/1025 (3%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V LQ  SS++LLE    + ++ +        A+A+TD N  +  + F + A   GI+P++
Sbjct: 4    VSLQNLSSFTLLESPTKVKDLAENAKKKGYSALALTDVNITYGLVNFYKAAKETGIKPLL 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVR 130
            G QL I+          G         ++++    +GY+ ++ L S + L  + G++   
Sbjct: 64   GMQLRIN----------GLIDQANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENV 113

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR--LYVNLQR 188
            + L  L++     +I+        + +    N+  +    +   K        +Y+ +  
Sbjct: 114  LELEELKKYLGHLVIITPSNLHSEL-KMLQTNNPNMGANYVRILKDAVPTSSLVYLGVYA 172

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +G   Y    +  LA   EL L A  +  +L+  +      L A+  +T +   ++   
Sbjct: 173  DQGQQEYIN-YLRSLATQFELSLAAVEDGQYLNRNEQFLRRTLQAIKSNTHLENVEQLAK 231

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                +    SE + +       +E+ +E A +   +           + K   +     +
Sbjct: 232  QAGSHYLKTSEELQVN-YRKFEIEDALENAEKIGQLCNAKITFQDPQLPKFKQNKFPTSK 290

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L + A  GL  R        G   + Y++RLD+EL VI  M F  YFLIV D + +A 
Sbjct: 291  EYLHSLAQNGLAKRFK------GQIPERYQKRLDYELKVINEMGFDDYFLIVWDVMNFAH 344

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              +I  GPGRGS AGS+ +YAL IT++DPL ++LLFERFLNP R  MPD D+D   +RRD
Sbjct: 345  SVHITTGPGRGSAAGSLVSYALRITEVDPLEYNLLFERFLNPARQQMPDIDLDIPDNRRD 404

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  KYG    AQI+TFG+L AK  L+DV R   +   +  R    IP+       
Sbjct: 405  EVIKYMFEKYGMNHAAQILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAIPHAKGKITL 464

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +A       +     +     L   ++ LE L RH S HAAG+VI D  L+++V +   
Sbjct: 465  AEAYQKSKELQLLVNTNTFSKILFATAEHLENLPRHYSIHAAGLVITDDSLAEIVGLQ-A 523

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
                +PVTQ     +E  GL+K DFLGL+ LT+L   +  L   GV++D + IP +D ET
Sbjct: 524  GPLGIPVTQQTKLNVESLGLLKIDFLGLRNLTILGNIIAALKSEGVEIDPNQIPLNDQET 583

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T  +FQ ES G+++ LE + PD  EDI+A+ +LYRPGP++NI  + NRK+GK
Sbjct: 584  LALFQRGDTDAVFQFESDGIKRVLEQLHPDSFEDIVAVNALYRPGPMNNIGHFINRKHGK 643

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E++    P +  +L  T GV++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK  + + K+
Sbjct: 644  ERVQYPDPSLKKILGPTYGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSKKNADVIQKE 703

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E+FI GA K G  K +A  +++ +A+FA+YGFN+SHA AY+ I++  A+ K HYP  F 
Sbjct: 704  REKFIQGAVKLGRRKEVAEQVYDYIAQFANYGFNRSHAVAYSKIAFWLAYFKVHYPGAFY 763

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             + +   + N  KI ++   A++  I+ +PP +     DF + + +I   L AI+G+ + 
Sbjct: 764  LSLLNSNIGNRNKIAQYLMQAQEAGIKTLPPDIENSQADFSLENGKILVGLKAIRGLRSD 823

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
              + I+E    +P  S+ DF  ++D+  L+   + +L+ AGA D    +R +LL+   ++
Sbjct: 824  LLKQILEI--KRPIKSMTDFLWKIDNNLLSADAIANLIKAGAFDRLAPNRNELLKINKDL 881

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             +  +    N      ++F     T   KI  EK     ++ +   E   +GF    +P+
Sbjct: 882  VESVKMAGSN-----LSLF----ETLEPKIEEEKMP--TAAEKSAMEVEAMGFSTGINPI 930

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
               +   RK   K  +   +  +G  +     ++  +Q  T+KG  + +  FS+ + + +
Sbjct: 931  IAVQKYARKYNAKRLQAFESNEQGIAV---GKLMRIKQITTKKGDNMAFAVFSDSSGDKD 987

Query: 1029 ANFFP 1033
               FP
Sbjct: 988  FTIFP 992


>gi|209551461|ref|YP_002283378.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv.
            trifolii WSM2304]
 gi|209537217|gb|ACI57152.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
            trifolii WSM2304]
          Length = 1150

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 254/1096 (23%), Positives = 448/1096 (40%), Gaps = 119/1096 (10%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-- 62
            ++   +F  + V +++S LEGA     ++ + A  +   + I D N++   +    +A  
Sbjct: 1    MKSGSAFFEIGVRTNFSFLEGASGPEEMVVQAAHLRLGGLGIADRNSVAGVVRAHAQALQ 60

Query: 63   ---------------CAAG----------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
                              G          IQP  G +L                     P
Sbjct: 61   LEERYRNRDAILAQAEKEGKREEILEPIRIQP--GARLVFSDD---------------TP 103

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
             I+       G+  L  L+S   L ++  K +  +  + L E G E ++ L       + 
Sbjct: 104  DILAYPRNRRGWANLCRLLSAGNLKEEAVKGNCILTEAELMEWGDEMMLAL-------VP 156

Query: 157  RAFFFNSSQ---VAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLV 212
                 +  +     E  L  F++ F    ++ L   + G DR   + +  LA  + +PL+
Sbjct: 157  DRILVDHQEGQSALEDYLERFRRRFRKDFFMALAPAYDGRDRQVFAVLAMLAARNRVPLI 216

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            ATN  L+   E     DV++A+     +V          + YLK+  EMV IF D P A+
Sbjct: 217  ATNQPLYHHPERRPLSDVVIAIREHVQIVQAGFLLAPNAERYLKDSREMVRIFRDYPGAI 276

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
            ENT     R +F L+              +D  +  +  L     AG   R  +G     
Sbjct: 277  ENTQVFFGRLTFSLKELEHNY-----PPENDPGETPQETLERLTRAGAARRYPEG----- 326

Query: 332  YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
                   +++D+EL +I    ++ YFL V   I  A+ +   +  GRGS A SV  Y L 
Sbjct: 327  -IPAKVAKQIDYELKLIGDKNYASYFLTVHRIIHHARYDLKVLCQGRGSAANSVICYCLE 385

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT++DP + SLLF+RF++ DR   PD D+DF  DRR+EVI+++   Y  E         +
Sbjct: 386  ITEVDPQKSSLLFDRFISMDRDEPPDIDVDFEHDRREEVIQFIYRNYKREHAGLTAGVTT 445

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
             + ++A R+V +A  +       +  L+       +S      D++     + DP    +
Sbjct: 446  YRTRSAGREVAKAFGLSEDVQSAISSLVWGWSEDNLS----ERDAKAAGLDIKDPVTRNV 501

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
            L+ + +L G  RH + H  G VI    L ++VP+ +    D  + +++   ++   ++K 
Sbjct: 502  LKYASELLGFPRHLTQHVGGFVITRDRLDEVVPIMKTAMPDRYMIEWDKDDLDNVKILKV 561

Query: 572  DFLGLKTLTLLQKSLDFLAQRGVKVDL------SLIPFDDHETYHLLTTKGTLGIFQLES 625
            D L L  LT L+K    L                    +    Y ++    TLG+FQ+ES
Sbjct: 562  DVLALGMLTCLRKGFSLLELHYDVKKTLADLGNREHGDEGRPVYEMMGRADTLGVFQIES 621

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-----NRKNGKEKIVSIHPLIDP 680
                  L  ++P    D++  V++ RPGPI   +V+      +++     I      +  
Sbjct: 622  RAQMSMLPRLKPKLFYDLVIEVAIVRPGPIQGDMVHPYLKRRDQRAKNIPIEYPSEELKA 681

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKN 739
            +L+ T GV ++QEQ MQIA   +G++ +EAD LRRAM    +   +   + RFI G +  
Sbjct: 682  VLERTLGVPLFQEQAMQIAITAAGFAPAEADKLRRAMATFKRTGTIGNFETRFIEGMTSK 741

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G ++  A   F  +  F +YGF +SHAA++A++ Y ++W+K +YP  F AA +  +    
Sbjct: 742  GYAREFAQQCFNQIKGFGEYGFPESHAASFALLVYASSWLKAYYPDVFCAAMLNSQPMGF 801

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----------------------NRIYY 837
                +  +DAR+  ++I+P  +N    D  + +                      + +  
Sbjct: 802  YAPAQLVRDAREHGVKILPVDINESDWDCDLEEAAFDPNAVDFRHREMRGIIRARHAVRL 861

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
                IKGV       +++      + S+ D   R     L + V+E L  A A      S
Sbjct: 862  GFRQIKGVSDKEMELLVKNRGKG-YGSVRDLWLR---SGLQKSVIERLADADAFQSLRLS 917

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R   L ++  +       +     +   +F   +          K        +   + R
Sbjct: 918  RRDALWAVRAL-------DVKSAAEELPLFEQARHVDLQAEPATKLPEMLPGEQVIEDYR 970

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             L      HP+   +  LR  G+    + +    G  + +A +V+ +Q+  + KG  + +
Sbjct: 971  YLSLSLKAHPVSFLREELRHAGVTRNVDLLTVANGRRVTIAGLVLVRQRPGSAKG--VIF 1028

Query: 1018 VTFSEPAKEYEANFFP 1033
            +T  +      A  +P
Sbjct: 1029 MTLEDETGVANAIVWP 1044


>gi|126733349|ref|ZP_01749096.1| DNA polymerase III, alpha subunit [Roseobacter sp. CCS2]
 gi|126716215|gb|EBA13079.1| DNA polymerase III, alpha subunit [Roseobacter sp. CCS2]
          Length = 1101

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 261/1054 (24%), Positives = 449/1054 (42%), Gaps = 85/1054 (8%)

Query: 6    EKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
              +P+ FV L V + +S L GA    ++     A     +   D N +   +    +A  
Sbjct: 20   PNTPAAFVELGVTTCFSFLRGASDAVDLATTANAVGYDKLGCADLNTMAGVVRLHAEALR 79

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD- 123
            A I P+IGC+L +   +                  +        Y RL +L+S+  + D 
Sbjct: 80   AQITPVIGCRLQLITGEEF----------------LAYPRDRSAYGRLTKLLSKGKMHDV 123

Query: 124  ----QGKQSVRICLSWLQEIGTE-GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
                Q K    + L  L +      LI L G     +D   F       ++ L T K + 
Sbjct: 124  DGAWQAKGVCDMTLDDLAKYSAGVQLIALPG-----VDLDHFSAGLSRLKRALPTLKHIA 178

Query: 179  GDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
               LY      RG DR R +Q+  LA  + + ++ATN+  +   +     DV+  + +  
Sbjct: 179  ASYLY------RGDDRARINQLDALASANGMSILATNDVHYHVPDRRPLQDVMTCILYKK 232

Query: 239  VVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             + +         + +LK+ ++MV +F++ P A+  T E+A  C+F L   A   P+   
Sbjct: 233  TIQKAGFLLDANAERHLKSPAQMVRLFAEWPHAITATREVADACTFKLTELAYEYPKETV 292

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             +        +  L +    G   R   G           +  L  EL +IA++  + YF
Sbjct: 293  PDG----ATPQEYLEDLTWKGAAWRYPNGV------PGSLKATLRKELALIAKLDIAQYF 342

Query: 358  LIVADFIQWAKKNNIPV--GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            L +   + +A+    P     GRGS A S   Y L IT +DP    LLFERF++ +R   
Sbjct: 343  LTIQQVVNFARYECKPPILCQGRGSAANSAVCYVLGITAVDPDTNDLLFERFISEERKEP 402

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DF  +RR+EVI+++ +KYG +R A   T    + + A+R+VG+ + +       L
Sbjct: 403  PDIDVDFEHERREEVIQHIYDKYGRDRAALCATVIHYRPRMAVREVGKVMGLSEDITTAL 462

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             K I       V     A ++      L DP + R ++++ ++ G+ RH   H  G ++ 
Sbjct: 463  SKTIWGSWGREVG----AKEAAEAGIDLKDPLMARTIKLADQMIGMPRHLGQHVGGFILT 518

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            ++PL + VP+      +    +++   I++  ++K D L L  LT ++K+ D +     +
Sbjct: 519  EKPLLETVPIGNGAMPERSFIEWDKDDIDELRILKVDVLALGMLTCIRKAFDLIEAHYGE 578

Query: 596  V-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               L+ I   D  TY +L    +LG+FQ+ES      L  ++P    D++  V++ RPGP
Sbjct: 579  KLTLASIEEGDKPTYDMLCKGDSLGVFQVESRAQMNMLPRLKPREFYDLVIQVAIVRPGP 638

Query: 655  IDNIVVYN--NRKNGKEKIVSIHP-------LIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            I   +V+    R+NG+E      P        +  +LK T+GV I+QEQ M+IA + + +
Sbjct: 639  IQGDMVHPYLRRRNGQEPEEYPSPGPDHDPDELRKVLKRTKGVPIFQEQAMKIAMVAAEF 698

Query: 706  SLSEADVLRRAMGKKI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            S  EA+ LR+AM     +  +   +E+ +    + G     A   F  +  F DYGF +S
Sbjct: 699  SPDEANQLRKAMATFRSRGTIGALEEKMVGRMIRRGYDPEFATRCFNQIKGFGDYGFPES 758

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAA++A + Y ++W+K HYP  F AA +  +        +  +DAR+    +  P VN  
Sbjct: 759  HAASFAHLVYVSSWIKCHYPDVFCAALLNSQPMGFYAPAQIVRDAREHGKIVRAPDVNYS 818

Query: 825  CVDFKVG-----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
              D  +         +   L  I GV    A+ I++A   +PFDSL D  +R    +L+ 
Sbjct: 819  DWDNTLEPIAPGQFAVRLGLRQIDGVREDMAQRIVDARQ-QPFDSLTDLKTRA---RLDA 874

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
              +  L  A  +      R Q L     ++                +F+  K     ++ 
Sbjct: 875  GTIRKLASADGVRSMTLDRRQALWDARALRDAPD----------LPLFSENKD-EGAEVR 923

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
                           +          HP+   +  + K G            G  I+LA 
Sbjct: 924  F-DLPQMPICEHVVADYETTRLSLKAHPMSFLRKSMDKQGYTPTRMLDQLRNGQQIKLAG 982

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +V+ +Q+  + KG  + ++T  +         +P
Sbjct: 983  IVLIRQRPGSAKG--VCFITVEDERGVANLVVWP 1014


>gi|239816178|ref|YP_002945088.1| DNA polymerase III, subunit alpha [Variovorax paradoxus S110]
 gi|239802755|gb|ACS19822.1| DNA polymerase III, alpha subunit [Variovorax paradoxus S110]
          Length = 1118

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 256/1095 (23%), Positives = 432/1095 (39%), Gaps = 141/1095 (12%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA--- 65
            P +  L   S++S   GA +   ++++       A+AITD  ++   +            
Sbjct: 33   PDYAELHCLSNFSFQRGASTPEELVERAYQLGYTALAITDECSVAGIVRAHVCLRDLPAK 92

Query: 66   ------------------GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
                              G + + G +   +                    +V++ +  E
Sbjct: 93   LEEYEREHPGEPPLPRNPGFRLLFGSEFRFE-----------------RFRLVVIANGTE 135

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            G+  L E ++     +  K   R+         ++ +  L       +       +   A
Sbjct: 136  GWGNLCEFITAARNTELPKGEYRVSWE-----HSD-VASLQDCQVLFVPHREPGAAVDAA 189

Query: 168  --EKRLLTFKKLFGDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED 224
               + LL  K L+   L++ +   +   D    + ++Q      +PLVA  +    +   
Sbjct: 190  TLHEDLLAAKALYAGNLWLAVEMLNELDDDLWFAALMQAGEQTGVPLVAAGDVHMHARSA 249

Query: 225  YEAHDVLMAVAHSTVV-SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
               HDVL AV     V       +   + +L+ R  +  ++     A    V    R   
Sbjct: 250  KPLHDVLTAVREGKTVAECGFALQSNAERHLRQRVRLAELYLPRMLANTLVVAERCRFDP 309

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
             +       P           +     L  K   G +VR  +G           R +L+ 
Sbjct: 310  EVIRENYKYPLETV----GSSETPAETLVRKTWEGAQVRFPEG------IPDKVRAQLEK 359

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL +I  MK+  +FL V D +++A+  +I    GRGS A S   Y L IT I+P +  LL
Sbjct: 360  ELALIVEMKYEMFFLTVEDIVRFARSQSIL-CQGRGSSANSAVCYCLGITAINPEKGHLL 418

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFL+  R   PD D+DF   RR+EVI+Y+  KYG ER A        +A++ALRDVG+
Sbjct: 419  FERFLSRHRHEPPDIDVDFEHQRREEVIQYIYQKYGRERAAIAAVVICYRARSALRDVGK 478

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            A+ +    +D   K         +  Q     +R          V  + E++++L+G  R
Sbjct: 479  AMGIDERLIDEFAKDHYWFDDTVLGEQLFKAAARVGVQEDELKLVQWI-EMTRRLKGFPR 537

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
            H S H  G V+    L++LVP+ +    D  V Q+    +E  G++K D L L  L+ ++
Sbjct: 538  HLSQHVGGFVLTHTRLTRLVPVEKASMKDRSVIQWEKDDLEAMGMLKVDVLALGMLSAIR 597

Query: 584  KSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            + L      RG  V +  IP DD + + ++    T+G+FQ+ES      L  ++P C ED
Sbjct: 598  RGLDHMNRWRGSMVQMHHIPNDDQKVFDMICDADTIGVFQIESRAQMSMLPRLKPRCYED 657

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
            ++  V++ RPGPI   +V+   K  +      +I      + P L+ T G+ I+QEQVMQ
Sbjct: 658  LVIEVAIVRPGPIQGGMVHPYLKQRERVAKGLEIHYEKEELKPALERTLGIPIFQEQVMQ 717

Query: 698  IAQLLSGYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            IA + + ++  EAD LRRAM     K  ++K   + + G + +G     A  IF+ +  F
Sbjct: 718  IAMIAARFTADEADQLRRAMAAWKRKGGLEKFHHKLVKGMTDHGYKAEFAEAIFKQILGF 777

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
             DYGF +SHAA++A++   ++W+K + P  FLAA +  +        +  QDAR+  +++
Sbjct: 778  GDYGFPESHAASFALLVTVSSWLKNYEPACFLAALLDSQPMGFYSPSQLVQDARRHGVEV 837

Query: 817  MPPSVNTPCVDFKVG-------------------------DNRIYYSLAAIKGVGTTTAR 851
             P  V    +D  +                             +   L  I  +    A+
Sbjct: 838  RPADVTCSDIDTTLEARAPDAPRMPPGTDARYADRLGRENQPAVRLGLNRISSLSKEGAK 897

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD--------------CFGYS 897
             ++EA A  PF S ED   R +                 LD                   
Sbjct: 898  RLLEARAQAPFTSTEDLALRAE-----------------LDGKDMAALAAADALMSLSGH 940

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R Q +      ++                 A  KG   ++  L +            +  
Sbjct: 941  RRQQVWDATAQRRSP---------------ALLKGVPINEPVL-QLPAAPEGEEIVGDYA 984

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             LG     HPL + +P L +M +   E+  A   G  +R   +V  +Q+  T  G+   +
Sbjct: 985  ALGLTLRRHPLALLRPRLARMKLMSAEQLRAQPSGQTVRACGIVKGRQRPGTANGT--IF 1042

Query: 1018 VTFSEPAKEYEANFF 1032
            VT  +         +
Sbjct: 1043 VTLEDETGNVNVIVW 1057


>gi|226525297|gb|ACO70896.1| DNA polymerase III alpha subunit [uncultured Verrucomicrobia
            bacterium]
          Length = 1022

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 281/1042 (26%), Positives = 474/1042 (45%), Gaps = 92/1042 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            ++V L   S++S L G      + ++ A  + PA+A+ D + ++ A  F  K    G++ 
Sbjct: 2    AYVELHARSAFSFLRGGSFPERLAERAAELKMPAMALCDRDGVYGAPRFFGKGREHGVRS 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC+L ++                    + +LV +  GYQ L  L+++  L    ++S 
Sbjct: 62   IVGCELTMEDG----------------FILPVLVESRTGYQNLCRLLTQAKLRGTKERSP 105

Query: 130  RICLSWLQEIGTEGLIMLTG-----GSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
             +  + L E    GL+ L G       +GP+ +                    FG + ++
Sbjct: 106  -VNWNDLAEYAN-GLVALFGMENGKLEAGPVPKLLAA----------------FGKENVF 147

Query: 184  VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            V +QRH    ++ R   ++ LA  H LPL+ATN  L+      E  DV   + H T +  
Sbjct: 148  VEIQRHLTRGEQRRNQALIDLARHHRLPLLATNGVLYAEPRQREVLDVFTCLRHHTQLDL 207

Query: 243  KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              R      + +LK+ +EM ++F DLPEA++NT  +A R  F L+      P F      
Sbjct: 208  AGRLLEQNAERHLKSGAEMSALFRDLPEAIDNTERLAERLEFTLENLGYQFPTFPT---- 263

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               +  E  LR     G   R +          +   ++++ EL +I R+ F+GYFLIV 
Sbjct: 264  SGDETMEGMLRRLTYEGARRRYS------ARLPRKVVRQIERELELICRLGFAGYFLIVW 317

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM--SMPDFD 419
            D +++ ++N+I V  GRGS A SV  Y L IT  DP+++ LLFERFL+  R   S PD D
Sbjct: 318  DLVKFCEENDIMV-QGRGSAANSVVCYCLRITLCDPIKYKLLFERFLSEGRNPRSWPDID 376

Query: 420  IDFCQ-DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            +D    DRR+ VI+ V  +YG    A      S + ++A R++G+ L      +DR   L
Sbjct: 377  LDLPSGDRRERVIQEVYRRYGERGAAMTANVISYRGRSAAREIGKVLNFSNDVLDRFSNL 436

Query: 479  IPN-DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
              N D  H +  Q     +         P+  RL E  + L    RH   H+ G+VI  +
Sbjct: 437  FANGDFPHTLGFQEQVIKAGIAPEHPRLPAFMRLNEAMRGL---PRHLGQHSGGMVICQQ 493

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             L ++VP+ R       V Q++    E  G++K D LGL  L  +Q++L   ++RG +V 
Sbjct: 494  SLDRVVPLERASMPGRVVVQWDKDDCEDLGIVKIDLLGLGMLAAIQETLTLCSERGREVQ 553

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               +P DD  TY ++    T+G+FQ+ES      L  M+P C  D++  V++ RPGPI  
Sbjct: 554  FHKLPQDDPATYEMIRKADTIGVFQIESRAQMATLPRMKPTCFYDLVIEVAIIRPGPIQG 613

Query: 658  --IVVYNNRKNGKEKIVS--IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
              +  Y  R+ GKE         L+ P+L+ T GV ++QEQ++ +A  L+ +S SEA+ L
Sbjct: 614  GLMHPYLARREGKEPETYFGYDELLKPVLERTLGVPLFQEQMLGMAMALADFSGSEAEEL 673

Query: 714  RRAMGKKI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRA+      E M+K + +  +   +  I       I   ++ FA YGF +SHA ++A +
Sbjct: 674  RRALSFHRSHERMEKVQVKLRAALERKEIRPEAIEQIVNAVSSFALYGFPESHAISFAYL 733

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG- 831
            +Y ++W+K H   EF AA +  +           +DA++  ++  P  V        +  
Sbjct: 734  AYGSSWLKVHRAPEFYAALLNNQPMGFYAPATLIKDAQRRGVKFRPVCVQASQWPCVIEA 793

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            D  I   L  +KG+    A  ++   A +P++ L D  SRV   +L +    +L   GA 
Sbjct: 794  DGAIRLGLCMVKGLQRERAERLI---AGRPYEVLGDVQSRV---RLTKEEWRTLAEIGAF 847

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
               G  R + L ++++  +             +++F     +  +          N + R
Sbjct: 848  AVLGKHRREALWTVEDEYRE------------DDLFPMTTASVKECP----LPPMNPAER 891

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +          HP+ + +  + +       +      G  +R+A  V+ +Q+  T K
Sbjct: 892  VRADYAGTSVTIGRHPMALLRASVPE--AWRAVDLAHASHGTRVRIAGNVICRQRPGTAK 949

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G  + +++  +      A   P
Sbjct: 950  G--VVFISLEDETGIANAIVHP 969


>gi|315115543|ref|YP_001699725.2| DNA polymerase III subunit alpha [Lysinibacillus sphaericus C3-41]
          Length = 1027

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 351/1022 (34%), Positives = 539/1022 (52%), Gaps = 50/1022 (4%)

Query: 17   HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN-LFSALEFSQKACAAGIQPIIGCQL 75
            H+S  LL+  + L  ++  +   +  A AI   N  L+  L F +    A I  ++G  +
Sbjct: 9    HTSADLLKSTIRLEQLIPFLLEQKTQACAI--VNTKLYGLLPFCKAMQQAKIHAVMGLSV 66

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            ++   D             T   +VL   + EGYQ+L+++ S   + + G     +   W
Sbjct: 67   NVQWHD-------------TTLPLVLYAQSQEGYQQLLKISSAASIREDG----VLPWKW 109

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY 195
            L+      L +L+      +         +     +     LF    Y+ + R  G    
Sbjct: 110  LEGYAAGCLALLSSDDLAEL---------KDWHGVVSALAHLFQHHFYMGITRPGGVALA 160

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
             E+++V+      +PLVA  +  FL  ED+ A++V  A+     +           ++  
Sbjct: 161  NENELVEWCEGQRIPLVAVQSCYFLRPEDHFAYEVARAIDTGDKLGDTMLTAKLQGYFAP 220

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
               E  S F+D PE LE   ++   C  I+   +  +P+F     +      E+ L  +A
Sbjct: 221  TAQEWQSWFTDRPEWLETCGQMLASCRAIIPEMSVQMPKFPVPVGE----TAESLLVKEA 276

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
             +GLE R  Q  I  G     YR+RL +EL +I  M F+ YFL+VADF+++AK N I  G
Sbjct: 277  FSGLEERFNQLDIPYG-----YRERLRYELEIICSMGFADYFLVVADFMRFAKDNRILTG 331

Query: 376  PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
            PGRGS AGS+ AY+L IT +DPL + LLFERFLNP+R+S+PD DIDF   +R +VI+YV 
Sbjct: 332  PGRGSSAGSLVAYSLAITQVDPLAYGLLFERFLNPERISLPDIDIDFVDSKRHQVIQYVA 391

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
             KYG   VAQIITFG+L AKA  RDV R        ++++ K+IPN P   +  +A+ + 
Sbjct: 392  QKYGKGNVAQIITFGTLSAKAVARDVARVFGFGAEVLEKISKMIPNKPGITL-QKALEES 450

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
               +E    D    R  E++QKLEGL R++STHAAGIVI    L   VP+  D    +  
Sbjct: 451  YDLQEWLSEDHQHQRWFEVAQKLEGLPRNSSTHAAGIVIAPSSLVNTVPIE-DGHEGIYC 509

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTT 614
            TQ+ M  +E +GL+K DFLGL+ LT+L++         G  +D   IP  D +T+ LL +
Sbjct: 510  TQWPMGDVEASGLVKMDFLGLRNLTILEQIRWSIYKAGGPWIDFERIPMHDEKTFQLLQS 569

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
              T GIFQLES GM+QAL  + P    DI+A+ +LYRPGP++ I VY  RK GKE +V  
Sbjct: 570  GDTSGIFQLESEGMKQALRDIHPTQFLDIVAVNALYRPGPMEFIPVYARRKAGKELVVMP 629

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            HP+++P+L+ET GVI+YQEQ+++IA +L+G+S+ +AD+LRRA+ KK ++ +++Q+  F+ 
Sbjct: 630  HPVLEPILQETFGVIVYQEQIIKIASVLAGFSMGQADLLRRAVSKKNRQVLEEQQVTFVQ 689

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            GA K G  + +A  ++EL+ +FADYGF KSHA AY++ISYQ A++K H+P  F AA ++ 
Sbjct: 690  GALKQGYDQHVATEVYELIVRFADYGFPKSHAVAYSIISYQMAYLKAHFPQSFYAALLSN 749

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
               NV+KI++  Q+A+   I   PPS+      F V    I YSLA IKGV  T    I 
Sbjct: 750  ATGNVDKIQQLVQEAKDKGIPFYPPSLKDSTKYFTVEQEGIRYSLAGIKGVPHTFIESIN 809

Query: 855  EASADKP---FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
                  P   + +L D    + ++    +V+ESL++AGALD     R  L+ ++D   K+
Sbjct: 810  TLRQTNPQALY-NLFDLAVALSAQHFKPKVIESLIYAGALDYLEKDRAVLIMTIDAALKH 868

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
            A+ +  N         +        K    +        +  +E+  LGFY S HP+   
Sbjct: 869  AELLRPNEDIDI----STATEFNFGKPKYMQVDDMPQKEKLIHEKESLGFYISAHPVTQE 924

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +P    +      E      G  +++  ++   ++ +T+KG ++ +V   +      A  
Sbjct: 925  RPYWADVNCTS-RELKQMRDGTYVKMIGVMEEVKKIRTKKGEQMAFVQLQDEHGSVSATL 983

Query: 1032 FP 1033
            FP
Sbjct: 984  FP 985


>gi|294671267|ref|ZP_06736119.1| hypothetical protein NEIELOOT_02976 [Neisseria elongata subsp.
            glycolytica ATCC 29315]
 gi|291306994|gb|EFE48237.1| hypothetical protein NEIELOOT_02976 [Neisseria elongata subsp.
            glycolytica ATCC 29315]
          Length = 997

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 352/864 (40%), Positives = 508/864 (58%), Gaps = 22/864 (2%)

Query: 177  LFGDRLYVNLQRHRGYDRYRESQV--VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            LF +  Y+ LQR      +  S      LA    LP+VAT+ + FL  ED+ AH+  + +
Sbjct: 18   LFPNAFYLELQRLPEKPEWERSVAGSTALARKLNLPVVATHPTQFLEPEDFLAHEARVCI 77

Query: 235  AHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            A    ++ + RPR  +P  Y      M   F+DLPEALENTVEIA+RC+  + +    LP
Sbjct: 78   AEGWTLADRKRPREFSPSQYFVGAETMAERFADLPEALENTVEIAKRCNIHITLGKNFLP 137

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA---QDYRQRLDFELNVIAR 350
             F   +        ++ L   +  GL+ R+ Q    +   A    +Y++RLDFELN+I +
Sbjct: 138  LFPTPDG----LSLDDYLVKLSNEGLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQ 193

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            MKF GYFLIV DFI WAK +  PVGPGRGSGAGS+ AY+L ITD+DPL+++LLFERFLNP
Sbjct: 194  MKFPGYFLIVQDFINWAKTHGCPVGPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNP 253

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFD+DFCQ  R  VI YV+ KYG E V+QI+TFG++ +KA +RDVGR L++P++
Sbjct: 254  ERVSMPDFDVDFCQANRGRVIEYVREKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFT 313

Query: 471  QVDRLCKLIPNDPAHPV-SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
              D+L KLIP +   P+    A+  + + +E   A    D L+ +++KLE L R    HA
Sbjct: 314  LCDKLSKLIPLEANKPLGLDDAMKAEPQIQELIEA-EEADELITLAKKLEDLTRGLGMHA 372

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
             G++I    +S   P+Y+   S  PV+ ++   +E  GL+KFDFLGL+ LT+++ + + +
Sbjct: 373  GGVLIAPGKISDYSPVYQADESASPVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNI 432

Query: 590  AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
                   VD+  IP DD   Y +     T  +FQ ES+GM++ L+       E++IA VS
Sbjct: 433  KNTTGDIVDVGTIPLDDQAAYKIFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVS 492

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            LYRPGP+DNI  +  R  G+ +   IHPL++ +L  T G+++YQEQVMQ AQ++ GYSL 
Sbjct: 493  LYRPGPMDNIPDFVARMKGQ-EFQYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLG 551

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD+LRRAMGKK  EEM K +E F  GA+K GIS+  +  IF  + KFA YGFNKSHAAA
Sbjct: 552  GADLLRRAMGKKKPEEMVKHREIFAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAA 611

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            YA+ISYQTAW+K HYP EF+AA+M+ E+ + +++K F +DA    I  +PP +N     F
Sbjct: 612  YALISYQTAWLKAHYPAEFMAATMSSELTDTDQLKLFYEDALANGITFLPPDINESDYLF 671

Query: 829  KVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                 R I Y+L A+KGVG    + I+EA  D  F  L DFC RV  + +N+R LESL+ 
Sbjct: 672  TPDGERHIRYALGAVKGVGEGAVQSIVEARQDGRFRDLFDFCERVGKEHMNKRTLESLIK 731

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGA D    +R  LL ++D     A+  ++        +F   +      I + + +   
Sbjct: 732  AGAFDGTNPNRAMLLANIDLAIGNAE--QQAANANQGGLFDFAEDAIG-AIEMVETAPWG 788

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             +V+   E+ V+GFYFSGHP   Y   +R+   +   +       +++R+A    + +  
Sbjct: 789  DAVKLAEEKSVIGFYFSGHPFGPYAEEIRRFAPQKLSKLKPQ---DSVRVAGFATAIRTI 845

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANF 1031
              + G    +V   +     EA  
Sbjct: 846  MGKNGKL-AFVRLEDTEGSAEAIV 868


>gi|114705792|ref|ZP_01438695.1| putative dna polymerase iii alpha chain protein [Fulvimarina pelagi
            HTCC2506]
 gi|114538638|gb|EAU41759.1| putative dna polymerase iii alpha chain protein [Fulvimarina pelagi
            HTCC2506]
          Length = 1189

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 258/1061 (24%), Positives = 444/1061 (41%), Gaps = 76/1061 (7%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +   P F  +   S +S L GA     +           + + D N +   +   Q A 
Sbjct: 3    GMADIP-FAEIGTMSCFSFLRGASQPEELTVTARRLGLGGLGLADHNTVAGVVRAYQVAR 61

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
              G        L       L  +          P ++       G+ RL  L+S   L  
Sbjct: 62   EEG--------LAFAPGTRLVFS-------DGTPDVLAYPRNRAGWGRLCRLLSLGNLRA 106

Query: 124  QGKQSVRICLSWLQEIGTE-GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            + K    + L+ L E G E    +L   + G  +     +        L T +  F DR+
Sbjct: 107  E-KGRCELFLTDLLEWGEEINCAVLAPMAIGHGEGTIAESEIGKLAAVLNTLRSAFPDRV 165

Query: 183  YVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
             +     H G+D+ R +++  LA T   PL+ATN  L  + +     DV+ A+     + 
Sbjct: 166  RLAARYAHEGFDQRRLARLDDLAKTCRTPLLATNEPLAHAPQRRRLADVMTAIREHVPLD 225

Query: 242  QKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               R   +  + +LK   E+  +FS  P A+E         SF L+            E 
Sbjct: 226  GAGRHLAMNAERHLKPGHEIARLFSSCPHAVEEASRFFSELSFDLKSLKYE----YPDEA 281

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              + +  ++ELR+ A  G   R   G  A         +R++ EL +IA +++  YFL V
Sbjct: 282  LGLTRSPKDELRHLAYEGANWRYPDGVPAS------VTERIEHELEIIAELEYEPYFLTV 335

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
               + +A+   I    GRGS A SV  Y + +T++ P R  LLFERF++PDR   PD DI
Sbjct: 336  HHIVNFARSKGIL-CQGRGSAANSVVCYCIGVTEVSPERAGLLFERFISPDRREPPDIDI 394

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EVI+Y+   YG +  A   T  + +A++ALR+VG+A  +    +  L   + 
Sbjct: 395  DFEHERREEVIQYIFEHYGRDNAALAATVITYRARSALREVGKAFSLSEDTIAALAGSVW 454

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
               +  V       +++     +ADP    +++ ++++ G  RH S H  G VI    + 
Sbjct: 455  GYHSSDVG----EREAKAAGLSMADPMTAAVMKYAEEISGFPRHLSQHVGGFVITRGRID 510

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS- 599
            + VP+         + +++   I++ G++K D L L  L+ ++++ D L     +     
Sbjct: 511  ETVPILHSTMDGRTIIEWDKDDIDELGILKIDILALGMLSCIRRAFDLLKVHYGREITLA 570

Query: 600  --LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                  DD  TY ++    TLG+FQ+ES      L  ++PD   D++  V++ RPGPI  
Sbjct: 571  ELSEGQDDPATYRMIQRADTLGVFQIESRAQMTMLPKLKPDKFYDLVIEVAIVRPGPIQG 630

Query: 658  IVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V+    RK G E++    P +  +L  T GV ++QEQ M+IA + +G++  EAD LRR
Sbjct: 631  DMVHPYLRRKMGLEQVTYPKPELAEVLGRTLGVPLFQEQAMRIAIVAAGFTPGEADKLRR 690

Query: 716  AMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AM    +   +   +++ + G    G     A   F+ +  F +YGF +SHAA++A++ Y
Sbjct: 691  AMATFRRVGTIHTFRQKMVEGMVARGYEPDFAERCFKQIEGFGEYGFPESHAASFALLVY 750

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-- 832
             + W+K HYP  F AA +  +        +  +DAR+  +   P SVN    D  +    
Sbjct: 751  ASCWLKCHYPDVFAAALLNAQPMGFYAPAQIVRDAREHGVSFRPVSVNESGWDQSLEKEP 810

Query: 833  --------------------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
                                + +      +KG+       ++E      +DS+ D   R 
Sbjct: 811  FDASKIEDRHAGMRPAIWSAHAVRLGFRQVKGLSEPDMAILVERRGAG-YDSVRDVWLRT 869

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
              K   R V+E L  A A    G SR   L ++  +                 +F     
Sbjct: 870  GLK---RAVIERLAEADAFASLGLSRRDALWAVRALDPKGAAER-------LPLFEGAAA 919

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                +                N+ R +      HP+   + IL +  I+          G
Sbjct: 920  KDLQREPDAFLPPMRPGEEVVNDYRFISLSLKAHPVSFVREILTERRIRTNRSLETLRSG 979

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + + ++ +V+ +Q+  + KG  + ++T  + +       +P
Sbjct: 980  SQVDVSGLVLVRQRPGSAKG--VIFITIEDESGTANIIVWP 1018


>gi|288957250|ref|YP_003447591.1| DNA polymerase III subunit alpha [Azospirillum sp. B510]
 gi|288909558|dbj|BAI71047.1| DNA polymerase III subunit alpha [Azospirillum sp. B510]
          Length = 1043

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 286/1035 (27%), Positives = 458/1035 (44%), Gaps = 74/1035 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  LQV +S+S LEGA   + +    AA    A+ +TD N+L   ++    A   GI+P
Sbjct: 3    RYAELQVATSFSFLEGASQPDELALTAAALGLAAVGVTDRNSLAGVVQMHVAARKLGIRP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +IGC+LD+                     ++   +    Y RL  L++        K   
Sbjct: 63   LIGCRLDLTDAGG----------------LLAYPTDRAAYARLSRLLTLGKRR-APKGEC 105

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-KLFGDRLYVNL-Q 187
             I  + +       L +L                 +   + L  ++  L   +L++    
Sbjct: 106  FIARADVLAHAEGMLFLLLSP----------DRRDESFLRELRAWRGGLARGQLFLAASH 155

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQKDRP 246
            R++G D  R   +  LA    +PLVATN+ L+         DV+  + H T +     R 
Sbjct: 156  RYQGDDSRRLRWLAGLAEAEGVPLVATNDVLYHGAGRRALADVMTCIRHHTSIDEAGWRL 215

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +LK   EM  +F D PEA+  T EIA  C F L        R+   +     ++
Sbjct: 216  CANAERHLKPAVEMARLFRDHPEAVARTAEIADACRFSLDE-----LRYEYPDEVAEGRD 270

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +  L      G   R   G           RQ ++ EL +IA  +++ YFL V D + +
Sbjct: 271  PQETLVTLTWEGAAKRYPAG------IPDPVRQTVERELALIADRRYAPYFLTVHDIVNF 324

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+K +I    GRGS A S   Y L IT +DP    LLFERF++  R   PD D+DF  +R
Sbjct: 325  ARKQDIL-CQGRGSAANSAVCYCLGITSVDPTEVDLLFERFISAARDEPPDIDVDFEHER 383

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG +R     T    +A++ALR+VG+A+ +    V RL   I       
Sbjct: 384  REEVIQYIYRKYGRDRAGLTATVIRYRARSALREVGKAMGLSADLVARLTGSIWGWSGQG 443

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            V      + +R       DP + R LE++Q+L G  RH S H  G VI   PLS L P+ 
Sbjct: 444  VD----EERARSLGLDPDDPRLRRTLELAQELTGFPRHLSQHVGGFVITRGPLSDLCPVA 499

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                 D    +++   I+  G++K D L L  LT + ++ D + +  G +  L+ IP +D
Sbjct: 500  NAAMEDRTTIEWDKDDIDALGILKVDVLALGMLTCIHRTFDMIERLHGTRWTLATIPQND 559

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
               Y +L    +LG+FQ+ES      L  ++P C  D++  V++ RPGPI   +V+    
Sbjct: 560  PAVYGMLGRADSLGVFQVESRAQMSMLPRLKPTCFYDLVIEVAIVRPGPIQGGMVHPYLR 619

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R++G E +    P ++P+L  T GV ++QEQ M++A + +G+S  EAD LRRAM    K 
Sbjct: 620  RRSGAEPVTYPMPRLEPVLHRTLGVPLFQEQAMKVAMVGAGFSGEEADQLRRAMAAFRKT 679

Query: 724  -EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             ++ +  ++FI+G + NG     A   F+ +  F +YGF +SHAA++A++ Y +AW+K H
Sbjct: 680  GQVRRFHDKFIAGMTANGCDAAFAERCFQQIEGFGEYGFPESHAASFALLVYVSAWIKRH 739

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYYS 838
            +P  F AA +  +        +  +DAR+  + ++PP VN    D  V        +   
Sbjct: 740  HPAIFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPPDVNLSGWDCAVEAGETGLTLRLG 799

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L  I+GV    A  I+ + A   +    D   R    +L    LE L  A A    G  R
Sbjct: 800  LRLIRGVTEDHADAIVLSRAGG-YRDPYDLWRRA---RLPVATLEKLARADAFRSVGLDR 855

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
               L ++           +   +    +FA   G  + +                 +   
Sbjct: 856  RAALWAV-----------RALGDAPLPLFARLDGPMAGEPDAP-LPAMALGEHVVMDYGS 903

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            L      HPL + +  L   G+   E    T  G  +  A +V+ +Q+  +  G  + ++
Sbjct: 904  LSLSLKAHPLALLRDGLP--GVTPAERLARTRDGRRLTTAGLVLVRQRPGSAAG--VVFL 959

Query: 1019 TFSEPAKEYEANFFP 1033
            T  +          P
Sbjct: 960  TLEDETGIANLVVMP 974


>gi|103488257|ref|YP_617818.1| DNA polymerase III, alpha subunit [Sphingopyxis alaskensis RB2256]
 gi|98978334|gb|ABF54485.1| DNA polymerase III, alpha subunit [Sphingopyxis alaskensis RB2256]
          Length = 1092

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 247/1061 (23%), Positives = 438/1061 (41%), Gaps = 95/1061 (8%)

Query: 5    LEKS---PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--- 58
            + ++   P F  L   ++YS L GA     ++ +        I I D N++   +     
Sbjct: 1    MSENRFGPGFAELVAATNYSFLRGASHPAEMVKEALDLGMSGIGIADRNSVAGVVRALTG 60

Query: 59   ----SQKACAAGI-----QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
                 + A   GI     Q ++G +L  D                  P IV   +T  G+
Sbjct: 61   LRKLHEDAAEEGIELPPFQLVVGARLVFDDG---------------TPDIVAYPTTRHGW 105

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
             RL  +++           V    + L       LI + G               +  E 
Sbjct: 106  GRLTRMLTIGNRRTTKGGCVMKLKNLLIHCQDMILIAMAG---------------EKDEA 150

Query: 170  RLLTFKKLFGDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             L   KK+  + L++       G DR   +++  LA    +P++ATN++L+ + E    H
Sbjct: 151  VLRRLKKIAPNALWLGATMPREGSDRRHLARLQSLADRVGIPMLATNDALYATREQRPLH 210

Query: 229  DVLMAVAHSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            DV+  +   T + +  R  R   + +LK+  EM  +F   P A++ ++ I  R  F L+ 
Sbjct: 211  DVVTCIREGTTLHEAGRLLRANGERHLKSPQEMRRLFRACPSAVDESIRILDRIGFSLRD 270

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                 P     E  D     ++ L +  +        QG        Q +++ LD EL++
Sbjct: 271  LEYEYPHEPVPEGWD----PQSWLEHMVLDAANRLHPQGL------PQRWQEVLDEELSL 320

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPV-GPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            I +  F+ YFL V D +++A+  + P+   GRGS A S+  Y L IT IDP+  +LLF R
Sbjct: 321  IRKCNFACYFLTVHDIVKYARSQDPPILCQGRGSAANSLVCYLLEITSIDPIANNLLFTR 380

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL+ +R   PD D+DF  +RR+EV++Y+  ++   R     T    + ++A+R+VG+AL 
Sbjct: 381  FLSEERREPPDIDVDFEHERREEVMQYIYRRHTRRRAGIAATVIHYRPRSAVREVGKALG 440

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
            +      RL           + ++   +             + RL  I  +L    RH S
Sbjct: 441  LSEDVTARLADTSWGSWGSEMPVERFVE----AGLDPEQDDMARLQWIVAQLLTFPRHLS 496

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             H  G V+ +  L + VP++    ++    +++   +++  L+K D L L  LT ++K  
Sbjct: 497  QHVGGYVLTEDRLDETVPIHNAAMAERTFIEWDKDDLDELRLMKVDVLALGMLTCIRKCF 556

Query: 587  DFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            D +   G    DL  +P +D   Y +L    ++G+FQ+ES      L  ++P    D++ 
Sbjct: 557  DLMRLHGLGDHDLKSVPPEDPVVYDMLCKGDSIGVFQVESRAQINMLPRLRPRKFYDLVI 616

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQ 697
             V++ RPGPI+  +V+   +   ++     P         ++ +L +T+GV ++QEQ M+
Sbjct: 617  QVAIVRPGPIEGDMVHPYLRRRNKEEKPELPLRAGAEANELEAVLGKTEGVPLFQEQAMK 676

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            +A + +G+S  EA+ LRRAM        + + +E+ I G  + G     A   F+ +  F
Sbjct: 677  LAIVAAGFSPDEANGLRRAMATFRNVGTIHQYREKMIGGMVRRGYEADFAARCFKQIEGF 736

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
              YGF +SHA ++A + Y ++W+K H+P  F    +  +        +  +DAR+  +++
Sbjct: 737  GSYGFPESHAQSFAKLVYVSSWLKCHHPAVFTCGLLNSQPMGFYAPAQLVRDAREHGVEV 796

Query: 817  MPPSVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                VN    D  +         +      + G     A  I+ A     F S+ED   R
Sbjct: 797  REVDVNASHWDNGLERRADGSLALRLGFRQVDGFREAWADQIVAARTT-SFASVEDLARR 855

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
                KL  R L  L  A A    G  R   L     +++               +F    
Sbjct: 856  A---KLPPRALRLLAEADACRSMGLDRRPALWEARRVRQ-----------GVLPLFGAAG 901

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                                   + +       GHP+   +    + G+    E  A   
Sbjct: 902  ANELGHEEDAALPPTPMVEHVLTDYQTTRLSLKGHPMAFLRRDFARAGVLSAVEVAAAKN 961

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            G  +R A +V+ +Q+    KG+   ++T  + +       +
Sbjct: 962  GAIVRTAGVVLIRQRPG--KGNA-IFITIEDESGIVNILLW 999


>gi|326773455|ref|ZP_08232738.1| DNA polymerase III, alpha subunit [Actinomyces viscosus C505]
 gi|326636685|gb|EGE37588.1| DNA polymerase III, alpha subunit [Actinomyces viscosus C505]
          Length = 1132

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 299/1125 (26%), Positives = 464/1125 (41%), Gaps = 144/1125 (12%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     +  L  HS+YS L+GA   +++          A+A+TD + +   ++ +Q   A
Sbjct: 1    MTGRHRYAELHAHSAYSFLDGANEPDDLASAAVELGLEALALTDHDGVPGIVKHAQAGRA 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+  I G +L +                     + +L     GY+RL+  +SR  L   
Sbjct: 61   HGLPTIHGTELTLADGS----------------HLPVLARNPTGYRRLVSAISRHNLDAG 104

Query: 125  GKQSVRICLSWLQ-----------EIGTEGLIMLTGGSSGPIDRAFFFN------SSQVA 167
             +Q     L  L            E      ++LTG ++GP+ RA            + A
Sbjct: 105  QRQEPAHDLPTLASALRSDPTGQTEAAAGTCLVLTGTANGPLRRALGDPRRPDAWDLKAA 164

Query: 168  EKRLLTFKKLF--GDR--------------------LYVNLQRHRGY-DRYRESQVVQLA 204
            +  L    +LF   DR                    L V L    G  D      + +LA
Sbjct: 165  DTCLGHLTELFAAPDRGRPTSTTTGDTQVEGDAAVGLAVELTLDGGPTDAALTDALTRLA 224

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
            +TH LPLVAT         D    DVL +    T +            +L+   +M  + 
Sbjct: 225  HTHRLPLVATGAVRCARPADARLADVLTSTRLVTDLEGARGHLPPIGRWLRGAQDMALLH 284

Query: 265  SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
               P A++   E+A   +F L + AP LP     E         + L      G   R  
Sbjct: 285  RRSPGAVDLAAELAADLAFDLSLIAPDLPDADVPEG----HTPASWLCELTRQGATRRYG 340

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                            L+ EL VI  + F GYFLIV   +++  ++ I    GRGS A S
Sbjct: 341  -----TPQEHPRAWDVLNHELEVIESLGFPGYFLIVHAIVEFCAQSGIL-CQGRGSAANS 394

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
               YAL IT +D +R  +LFERFL+P R   PD D+D    RR+EVI++V ++YG ER A
Sbjct: 395  AVCYALGITAVDAVRHQMLFERFLSPGRAGYPDIDLDIEACRREEVIQHVYSRYGRERAA 454

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            Q+    S + ++A+RD  RAL  P    D   K +    +                +   
Sbjct: 455  QVANVISYRPRSAVRDAARALGHPAGVQDAWAKQMERWTSVRPGG----------LSGQN 504

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            D   + +L+I++KL  L RH   H  G+V+  RP++++ P+      +  V Q++     
Sbjct: 505  DEVPEPVLDIAEKLLRLPRHLGVHPGGMVLCGRPVTEVCPVRWAAMDNRSVLQWDKDDCA 564

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGV------------------KVDLSLIPFDDH 606
            +AGL+KFD LGL  LT L+ +   LAQRG                      L  +P +D 
Sbjct: 565  EAGLVKFDLLGLGALTALRLAFTTLAQRGQAVPDAVTEGELRTSQSGRPWGLHTLPEEDP 624

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNR 664
              Y LLT   T+G+FQ+ES      L  ++P    DI+  V+L RPGPI       Y  R
Sbjct: 625  AVYRLLTAADTVGVFQVESRAQMATLPRLRPQTFYDIVVEVALIRPGPIQGDAVNPYIRR 684

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723
            + G+E++  +H  + P L +T GV ++QEQ+MQIA   +G+S +EAD LR+AM  K+  E
Sbjct: 685  RLGREEVTYLHDSLKPALTKTLGVPLFQEQLMQIAVDAAGFSPAEADSLRQAMGAKRSIE 744

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             MD  +++ I+G    GI +  A  I+  L  FA++GF +SHA ++A + Y +AW+K   
Sbjct: 745  RMDALRDKLIAGMRSRGIDEPTAETIYSKLRSFAEFGFPESHAFSFAYLVYASAWLKARK 804

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------------ 831
            P +F A  +  +       +    DAR+  ++++P  VN       V             
Sbjct: 805  PEDFYAGVLAAQPMGFWSPQSLVADARRHGVRVLPADVNRSLAQATVEQREDHQGAGPSD 864

Query: 832  -------------------DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR 871
                               D  +   LA IKG+G   A+ I+    A  P+  L D   R
Sbjct: 865  QWEPLRPHPAAPSSLDIHDDLAVRLGLAPIKGLGERAAQAIVTERCAHGPYRDLADLARR 924

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK-----HENI 926
            V    L+R  LESL  +GALD  G  R Q L +   +                      +
Sbjct: 925  VS---LSRSRLESLAVSGALDSLGVERRQALWAAGVLSDEHGRRRGASRQGPEVWCQPTL 981

Query: 927  FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
                 G+ +               R   +  + G    G PL + +  L   G+    + 
Sbjct: 982  PGTAVGSQA-----PTLPTMTDRERQAADLSLTGVSTQGSPLRLLRASLTADGVLSAADL 1036

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                 G+ +R+A +V  +Q+  T  G  + ++   +         
Sbjct: 1037 ADQEHGSRVRVAGVVTHRQRPHTASG--MIFLNLEDETGLLNVAC 1079


>gi|302546554|ref|ZP_07298896.1| DNA polymerase III, alpha subunit [Streptomyces hygroscopicus ATCC
            53653]
 gi|302464172|gb|EFL27265.1| DNA polymerase III, alpha subunit [Streptomyces himastatinicus ATCC
            53653]
          Length = 1166

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 267/1078 (24%), Positives = 453/1078 (42%), Gaps = 79/1078 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            + P F HL   S +S+  GA     +  + A     AIA+TD ++L  A+ F++ + AAG
Sbjct: 2    RMPGFTHLHTASGFSMRYGAAHPERLAARAAERGMDAIALTDRDSLAGAVRFARASEAAG 61

Query: 67   IQPIIGCQLDIDMQ--------DNLKMTNQGKTPFPTVPSIVLLVST-AEGYQRLIELVS 117
            ++P+ G  L +  +                G     + P  V L    A G+  L  LVS
Sbjct: 62   VRPLFGVDLAVQAELPDPGRTARRRTPVRGGAFIDESAPRAVFLARDGAAGWAALCGLVS 121

Query: 118  RMY--------LLDQGKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVA 167
              +            G     +    L         +I L G     + RA        A
Sbjct: 122  AAHAGLGHPGSARTNGDGPPLLHWRDLLNAPGALAPVIALLG-PDSDVGRALAAGRPDRA 180

Query: 168  EKRLLTFKKLFGDRLYVNLQRHRGYDR-----YRESQVVQLAYTHELPLVATNNSLFLSE 222
             + L  +++LFGD L +    H             ++ V  A    +  V +N   +   
Sbjct: 181  ARLLAPWRELFGDALRLEAVWHGRPGTGPGSLRLAARTVGFAADQGVRAVLSNAVRYADP 240

Query: 223  EDYEAHDVLMAVAHS---------TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALEN 273
             +    DVL +             ++ S +   +   D          +       A   
Sbjct: 241  GEGPVADVLDSARRLIPIDPRNPASLDSGERWLKGPRDMARAAERIAEAAGQRRDGAHRL 300

Query: 274  TVEIARRCSFILQVHAPILPRFIEKECDD-----IQKEEENELRNKAVAGLEVRLAQGAI 328
              E AR  +  L      +        +       ++  E  LR++  A + +R   G  
Sbjct: 301  LEETARTAAACLVDPEDHIGLGTVHFPEPRLVGAGRRSAERVLRSRCAAAMVLRGYDGDR 360

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
            A+         RL+ EL  I R+ ++ YFL VA  +   +   + V   RGSGAGS   +
Sbjct: 361  AR-------WGRLEDELRTIERLGYASYFLTVARVVDDTRALGVRVA-ARGSGAGSFVNH 412

Query: 389  ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
             L +   DP+   LL ERFL+  R ++PD DID    RR +V R + +++G ERVA +  
Sbjct: 413  LLGVAHADPVACGLLMERFLSVRRAALPDIDIDVESARRLDVYRAIFDRFGAERVATVSM 472

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN--DPAHPVSLQAIADDSRFREARLADP 506
              + + + A+RDVG AL M  ++VDRL K  P+        +L  + +    REA     
Sbjct: 473  PETYRVRHAVRDVGAALGMDPAEVDRLAKSFPHIRARDARAALAELPELKELREATAEQE 532

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
               +L E+ + L+GL R  + H  G+++ D  L    P+        P++QF+   +E+ 
Sbjct: 533  RFGKLWELVEALDGLPRGIAMHPCGVLLSDAGLLARTPIVPTSGEGFPMSQFDKDDVEEL 592

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLA----QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            GL+K D LG++  + +  ++  +     +     D + +   D  TY L+ +  TLG FQ
Sbjct: 593  GLLKLDVLGVRMQSAMAHAVAEIRRATGKTVDLDDPAQVRPGDPATYDLIRSTETLGCFQ 652

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDP 680
            +ES G R  L  +QPD   D++  +SL+RPGP+   +   + + ++G+      HP ++ 
Sbjct: 653  IESPGQRDLLGRLQPDSFHDLVVDISLFRPGPVAADMVRPFIDARHGRRPARYPHPDLED 712

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
             L+ET GV+++ EQ+++I  +++G     AD  RRA+    +    + +  F + A + G
Sbjct: 713  ALRETYGVVVFHEQIIKILSIMTGCERDLADEARRALSDPER--QGRVRAWFHAEAGRRG 770

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             S  +    +E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     
Sbjct: 771  YSAEVLGRTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYP 830

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRIYYSLAAIKGVGTTTARHIM 854
            K +    DAR+  + I+P  VN    D+++       +  +  +L+ + G+     R I 
Sbjct: 831  K-RLLLADARRRGVPILPLDVNRSGSDYRIELMSENGEVGVRLALSDVHGISEAETRRIA 889

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
               A +P+ SL+D   R       R V E L   GALD FG  R  LL  +  + +    
Sbjct: 890  ---AGQPYSSLQDLWLRAHP---GRPVAERLAQVGALDAFGAGRRDLLLHIAELHRQRAG 943

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
                       +        +           +   R   E  +LG   S H +  ++  
Sbjct: 944  THDE---GQLLL------AETGPPAPAGLPDLDEGERLGAELGILGMDVSRHLMADHRTF 994

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            L ++G    +   +   G  + +A    + Q    R G R+ + T  +     +  FF
Sbjct: 995  LDELGAMPAKRLRSARHGETVLVAGAKAATQTPPIRSGRRVIFTTLDDGTGLVDCAFF 1052


>gi|223043605|ref|ZP_03613650.1| DNA polymerase III, alpha subunit [Staphylococcus capitis SK14]
 gi|222443093|gb|EEE49193.1| DNA polymerase III, alpha subunit [Staphylococcus capitis SK14]
          Length = 1067

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 318/1026 (30%), Positives = 523/1026 (50%), Gaps = 85/1026 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H++Y LL  +L + ++++K   +   A+AITDT+ L+   +F     A  I PI 
Sbjct: 3    AHLNIHTAYDLLNASLKIEDVVNKAKNEGYRALAITDTHVLYGFPKFYDACIAKDIHPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +        T             V+L    EG + L +L S + + ++      +
Sbjct: 63   GMTISLTDGLYTVET-------------VVLAQNNEGLKALYQLSSAIKMKEKE----EV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRH 189
             L WL+      +I+                  +  +       + F D   +Y+    H
Sbjct: 106  PLEWLKRYDKNLIII-----------------FKDIDNTHKQIIEAFNDKIHVYI---NH 145

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               D     +            V   ++ +L+ ED +    L A+  ++ +   +  +  
Sbjct: 146  TSNDIVNRKK------------VWLKSARYLNREDADTISALQAIKDNSKLDIINDSKDF 193

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +H+   +           +  +NT +I   C   L  H  +LP+++  + +  +    +
Sbjct: 194  GEHFPDQKEF--EELEIDEKIKQNTEDIVDLCKAELVYHQSLLPQYVTPDGEVSKDYLWS 251

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L  K                  + + Y  RL  E  +I +M F  YFLIV+D I +AK 
Sbjct: 252  VLIRKLNE------------WNLNNEQYLNRLKHEYEIITKMGFEDYFLIVSDLIHYAKT 299

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            +++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++
Sbjct: 300  HDVMVGPGRGSSAGSLVSYLLEITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREK 359

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+YVQ KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     +  
Sbjct: 360  VIQYVQEKYGELHVSGIVTFGHLLARAVGRDVGRIMGFDETTLNEISKLIPHKLGITLDK 419

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                 +  F+     +   +   E+S+KLEGL RH STHAAGI+I D+PL +  P+    
Sbjct: 420  AY--QEEDFKSFVHRNHRNELWFEMSKKLEGLPRHTSTHAAGIIINDQPLYKYAPLTLGD 477

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHET 608
                 +TQ+ M   E+ GL+K DFLGL+ L+++ + ++ + +   V +D+  IPFDD   
Sbjct: 478  TG--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIVNQVKKDLDVDIDVEAIPFDDKNV 535

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++  
Sbjct: 536  FKLLSQGDTTGIFQLESEGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDP 595

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             K+  +H  ++ +LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +
Sbjct: 596  SKVEYLHNDLESILKSTYGVIIYQEQIMQIASKFANFSYGEADILRRAMSKKNRAVLENE 655

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            ++ F++GA +NG ++ I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K +YP  F 
Sbjct: 656  RQHFVNGAKQNGYNEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVYYPNYFY 715

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            A  ++  + + +K      +A+   + I+PP++N     +K     IY SL AIKGVG  
Sbjct: 716  ANILSNVIGSEKKTSAIIDEAKHQKLNILPPNINESHWYYKATTKGIYLSLGAIKGVGYQ 775

Query: 849  TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            + + I++    +  F    DF  R+  +  +R++LE+L+  GA D FG +R  LLQ++D 
Sbjct: 776  SVKTIVDERYNNGKFKDFFDFTRRIPKRVKSRKLLEALILVGAFDHFGKNRATLLQTIDQ 835

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +   A  VE++       +F       + K   E        +  + E+  LGFY S HP
Sbjct: 836  VLDTASDVEQDDM-----LFD----ILTPKQAYEDKEELPDKMLSDYEKEYLGFYISKHP 886

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            ++       K    G  +         I +     + +Q +T+ G  + +VT ++     
Sbjct: 887  VE---KEFDKKQYLGIYKLGNAQNHQPILV--HFDAIKQIRTKNGQNMAFVTLNDGMLLM 941

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 942  DGVIFP 947


>gi|171059584|ref|YP_001791933.1| DNA polymerase III subunit alpha [Leptothrix cholodnii SP-6]
 gi|170777029|gb|ACB35168.1| DNA polymerase III, alpha subunit [Leptothrix cholodnii SP-6]
          Length = 1109

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 269/1101 (24%), Positives = 429/1101 (38%), Gaps = 129/1101 (11%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC----- 63
            P +  L   S++S L GA     ++ + A     A+AITD  ++   +   + A      
Sbjct: 6    PDYAELHCRSNFSFLSGASHAEELISRAARLGYRALAITDECSVAGVVRAHEAARHPRGE 65

Query: 64   ----AAG-IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
                  G ++ IIG +  +           G  P      ++LLV    GY +L  L++ 
Sbjct: 66   RAPDDPGLLRLIIGSEFTLSP-----AAASGTRPPHPGGRLLLLVRNRAGYGQLCTLITL 120

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
                   K   R+         ++   +L       +                      F
Sbjct: 121  ARSRCA-KGDYRLDADDFDPAPSDCWALLLPRREDDLPTLLTQ---------ARWLVARF 170

Query: 179  GDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            G+R  + ++      D  R +     +     PLVA  + L          D L A+ H 
Sbjct: 171  GERARIAIELLQHADDNLRIAHARAASQASGAPLVAAGDVLMHVRSRKPLADTLTAIRHH 230

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
              ++      +  +     RS +       PE L  +V IA  C+F L       P  I 
Sbjct: 231  LPLAD-CGHLLMRNAEQHLRSRLALAQIYRPEWLAESVRIADACTFSLDELRYEYPDEIV 289

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                       + LR + +AG   R    +   G        +++ EL ++A M++  +F
Sbjct: 290  PAG----HSASSYLRQETLAGAARRYPPHSHPDG-IPPGVLAQIEHELALVAEMRYEAFF 344

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            L V D ++ A++  I    GRGS A S   Y L IT++DP + +LLFERF++ +R   PD
Sbjct: 345  LTVHDIVRQARRLGIL-CQGRGSAANSAVCYCLGITEVDPTQTTLLFERFISRERGEPPD 403

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+DF  +RR+E+I+Y+  KYG  R A      + + + ALRDVGRA  +    +D + K
Sbjct: 404  IDVDFEHERREEIIQYIYAKYGRHRTALAAAVSTYRVRGALRDVGRAFGLDELLIDAVAK 463

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                        + +A+    +      P   + LE++  L G  RH S H+ G VI   
Sbjct: 464  SYQWFDGRGALSERLAE----QGLDAESPVTQQWLELATTLMGFPRHLSQHSGGFVIARE 519

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG---- 593
             LSQLVP+         + Q++   +E  GL+K D L L  LT+L+KSLD          
Sbjct: 520  SLSQLVPIEPAAMDGRQIIQWDKDDLESLGLLKVDVLALGMLTVLRKSLDLANAWHGRTA 579

Query: 594  --------------------VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
                                    L  IP DD  TY ++    T+G+FQ+ES   +  L 
Sbjct: 580  QAWRGGSGSFSHRAPQRPEREPWTLHHIPRDDPATYAMIRKADTVGMFQIESRAQQSMLP 639

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
             ++PD   D++  V++ RPGPI   +V+    RK GKE+  S +P +D  L  T GV I+
Sbjct: 640  RLRPDKFYDLVIEVAIVRPGPIQGGMVHPYLRRKQGKERADSPYPALDAALARTLGVPIF 699

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIF 750
            QEQVMQ+  + +G+S  EAD LRRAM     K  +    ER + G  + G  +  A  IF
Sbjct: 700  QEQVMQVCMIAAGFSPGEADGLRRAMAAWRRKGGVHHFHERIVGGMVERGYERAFAEGIF 759

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
              +  F +YGF +SHA ++A++++ +AW+K H P  FLAA +  +        +   DAR
Sbjct: 760  RQIQGFGEYGFPESHAYSFAILAWFSAWLKCHEPAAFLAALLNSQPMGFYGPAQLVADAR 819

Query: 811  QFNIQIMPPSVNTPCVDFKVG-------------------------DNRIYYSLAAIKGV 845
            +  +++ P  V     D  +                             +   L  + G+
Sbjct: 820  RHQVEVRPVDVTRSDWDCTLEAPSPAAAAPATDPPASARPPGSGAGGPAVRLGLRQVGGL 879

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD------------- 892
               +A  +++A  +  F  + D   R                  ALD             
Sbjct: 880  SQASAERLLQARREAAFIDVHDLARRA-----------------ALDPHELQTLARADAL 922

Query: 893  -CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
                  R Q +         A       T          +     +  L           
Sbjct: 923  AALAGHRRQQVW------AAAAPPAAPLTTGTGPGAGLLQDAPIREPQLSLIEA-PEGEA 975

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +    G     HPL + +  LR+  +K   E      G  +R   +VVS+QQ  T  
Sbjct: 976  VTLDYAATGLSLRRHPLALLRERLRRQAVKSAAELARVPDGRVVRACGLVVSRQQPGTAH 1035

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G+   +VT  +         +
Sbjct: 1036 GT--VFVTLEDETGVVNLIVW 1054


>gi|239817499|ref|YP_002946409.1| DNA polymerase III, subunit alpha [Variovorax paradoxus S110]
 gi|239804076|gb|ACS21143.1| DNA polymerase III, alpha subunit [Variovorax paradoxus S110]
          Length = 1040

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 262/1046 (25%), Positives = 452/1046 (43%), Gaps = 88/1046 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L+  S++S L GA   + ++++       A+A+TD  +L   +     A    ++
Sbjct: 4    PDYAELRCVSNFSFLRGASQPDELVERAKQLGYAALALTDECSLAGVVRAHVAAKDHDLK 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             +IG Q  ++    L        P     ++ +L    +GY  L   ++++    + K +
Sbjct: 64   LLIGSQFLVEPDAELD-------PEAAPFTLTVLACDLDGYGNLSAFITKLRRSSE-KGT 115

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPID-RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             ++ L+ ++     G ++L          +  +               + F  R +  ++
Sbjct: 116  YKLPLAQIRGAELAGCVVLASPRRMATPAQLGWLG---------AWLLREFLGRCWFAVE 166

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            + R   D     ++ +++   E+PLVA  +  F         DV+ A      ++     
Sbjct: 167  KLRLLDDEMWLHRLGEVSAATEIPLVAAGDVHFHVRSRKPLQDVMTATRLGKPLTDCGLE 226

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                      R+ +    +  PE L  T+++A RCSF L+      P  +    +     
Sbjct: 227  LQPNA-ERHLRTRLRLAQTYAPELLAETLKVAARCSFNLEELRYQYPDEVVPAGE----T 281

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR     G   R   G           + +++ EL +IA +K+  YFL VAD + +
Sbjct: 282  PAGYLRRLTYEGGGRRWPDG------IPAKVQAQIEHELALIAELKYEHYFLTVADIVMF 335

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+  +I    GRGS A SV  Y   +T++DP R S+LFERF++ +R   PD DIDF  +R
Sbjct: 336  ARARHIL-CQGRGSAANSVVCYCTGVTEVDPGRMSVLFERFISKERNEPPDIDIDFEHER 394

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EV++Y+  KYG +R A      S + K+A+RDVG+AL M    VD L K         
Sbjct: 395  REEVLQYLYAKYGRDRAAITGVVISYRPKSAIRDVGKALGMSLETVDALAKGHQWWDGGA 454

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            V  + + +             V +LL ++++L G  RH S H  G V+   PL ++VP+ 
Sbjct: 455  VRPERLQE----LGLAADSLQVQQLLHLTEQLIGFPRHLSQHTGGFVLTKGPLCRMVPIE 510

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDD 605
                 D  V +++   ++  GL+K D L L  LT ++K+L     ++G    +  IP +D
Sbjct: 511  NASMPDRTVIEWDKDDLDALGLLKVDCLALGMLTAIRKALDFIGLRKGCVFGMQDIPAED 570

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
              TY ++    T+G+FQ+ES      L  ++P C  D++  V++ RPGPI   +V+   N
Sbjct: 571  SATYDMICKADTIGVFQIESRAQMSMLPRLKPRCFYDLVIEVAIVRPGPIQGGMVHPYLN 630

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IK 722
            R+ G+E +V     +   L  T GV ++QEQVMQI+ L +G++  EAD LRR+M     K
Sbjct: 631  RRQGREPVVYPSEALKEALGRTLGVPVFQEQVMQISILAAGFTPGEADGLRRSMAAWKRK 690

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              ++    + + G +  G  ++ A  IFE +  F++YGF +SHAA++A++ Y + W+K H
Sbjct: 691  GGLEHYHAKIVDGMTARGYEESFAKAIFEQIKGFSEYGFPESHAASFALLVYASCWIKCH 750

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----NRIYYS 838
            +P EFLAA +  +        +  QDAR+  +++ P  V    VD  + D      +   
Sbjct: 751  HPAEFLAAMLNSQPLGFYSPSQLVQDARRHGVEVRPVDVMYSDVDCTLEDLAHEPAVRLG 810

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG--- 895
            L  I G+ + +A  I+EA   + FDS ED   R          LE       L       
Sbjct: 811  LRMIGGLKSASAGRIVEARVQQVFDSTEDLALRAR--------LE-------LHEMKLLA 855

Query: 896  ---------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
                       R Q +     ++     + +                             
Sbjct: 856  AADALASLSGHRRQQVWEAAGLRAAPGLLRE----------------VPVDEDFLGLDAA 899

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                    +    G     HPL + +  L   G+    +      G ++    +V  +QQ
Sbjct: 900  PEGEEIVFDYASTGLTLRRHPLALLRERLALRGLMTARDLDEIENGEHVSHCGIVTLRQQ 959

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +T KG+   +VT  +     +   +
Sbjct: 960  PETAKGT--IFVTLEDETGVVQVIVW 983


>gi|295688141|ref|YP_003591834.1| DNA polymerase III subunit alpha [Caulobacter segnis ATCC 21756]
 gi|295430044|gb|ADG09216.1| DNA polymerase III, alpha subunit [Caulobacter segnis ATCC 21756]
          Length = 1082

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 251/1067 (23%), Positives = 438/1067 (41%), Gaps = 97/1067 (9%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + + P++  LQ  S++S L GA     +     A    A+ I D N+L   +     A  
Sbjct: 1    MPRRPAYAELQTTSNFSFLRGASHAEELAIAAEALGLTAVGIADRNSLAGVVRAWTAAKQ 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
              ++ + GC+LD                    PS++   +  E + RL  L++      +
Sbjct: 61   RQVRVLTGCRLDF---------------MDGTPSLICYPTDREAFARLTRLLTLGQRRAE 105

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K    +  +   +  +EG I L                 +  E+ L         R ++
Sbjct: 106  -KGQCHLSWADFLD-HSEGQIGLIVPP---------RTLDETFERDLTRMAGDLSGRSWL 154

Query: 185  NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQ 242
               R +   D  R S++  L      P+VATN+ L+   E     D++  V     +   
Sbjct: 155  AASRAYAAQDLKRLSRLDALGRDAGAPIVATNDVLYHGPERRPLQDIITCVREHCAIHEA 214

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
              R     + +LK+ +EM  +F   P A+E TVEI  R  F L       P         
Sbjct: 215  GFRLEANAERHLKSAAEMARLFERWPRAVERTVEIVERIGFDLGQIKEQYPDEPVPPG-- 272

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              K     L +   +G   R   G        +  + +L+ EL +IA+M +  YF+ V D
Sbjct: 273  --KSAMQHLTDLTWSGAAWRYPGG------IPEKVKAQLEEELRLIAKMDYPNYFITVHD 324

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             ++ A+K  I    GRGS A S   Y L +T IDP    LLF RF++ +R   PD D+DF
Sbjct: 325  IVREARKMGIL-CQGRGSAANSSVCYCLGVTAIDPTEHRLLFTRFISENRGEPPDIDVDF 383

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR+EV++YV  +YG E  A   T    + ++A+RDVG+AL +       L   +   
Sbjct: 384  EHERREEVMQYVYERYGREYAAICGTVIHYRPRSAIRDVGKALGLTEDVTSLLAGTVWGS 443

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              + +  + + D           P + R + ++ +L    RH S H  G V+  R L + 
Sbjct: 444  WGNGLPEEHLRD----AGLDPQAPEIARAVALATELLKFPRHLSQHVGGFVLTKRRLDET 499

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS--- 599
            VP+      D    +++   I+   L+K D L L  L+ +Q+++  L +   +  L    
Sbjct: 500  VPIGNAAMKDRTFIEWDKDDIDSLSLMKVDILALGMLSAIQRAMTMLREDHGQAWLKDLA 559

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP +    Y +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI   +
Sbjct: 560  DIPKEVSGVYDMLCKADSVGVFQVESRAQMSMLPRLKPREFYDLVIEVAIVRPGPIQGDM 619

Query: 660  VYNNRKNG----------KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            V+   K                      +  +L +T GV ++QEQ M +A   + ++  E
Sbjct: 620  VHPYLKRKNNIEPVEWPAPSPEHGPEDELKGILGKTFGVPLFQEQAMSLAIEAAKFTPDE 679

Query: 710  ADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            AD LR+AM          + +++F+ G  + G  +  A   F+ +  F  YGF +SHAA+
Sbjct: 680  ADGLRKAMATFRNLGTPAEYRDKFVEGMVRRGYQRDFAERCFKQIEGFGHYGFPESHAAS 739

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            +A + Y +AW+K  +P  F AA +  +     +  +  +DAR+  ++++PP +     D 
Sbjct: 740  FAKLVYVSAWIKWAWPDVFCAALINSQPMGFYQPAQLVRDAREHGVEVLPPDILASAWDC 799

Query: 829  KVGDN-----------------------RIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +                           +      IKG+       ++ A A+    + 
Sbjct: 800  TLEKGAAYEGFRPRADKIADYANRSQWKAVRLGFRQIKGLKQVDVAVLVHARAEGA-RTP 858

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             +F        + +R LE L  A A    G +R + L ++  +        ++R      
Sbjct: 859  GEFAQ----GGVPQRALELLAEADAFAGVGLTRREALWAVKGL------KGEHRAPVQAP 908

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            + A     F D++ L   +          + R        HP+  Y+P+L++ G+   E 
Sbjct: 909  LLAGLP-LFEDRVALPAMAKP---QDVAEDYRTTSLSLKAHPIGFYRPMLQRRGVITAER 964

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                  G  + +A +V+ +Q+  T KG  + +VT  +      A  +
Sbjct: 965  LSTLKDGARVSVAGLVLIRQRPGTAKG--VVFVTLEDETGVANAVVW 1009


>gi|294675695|ref|YP_003576310.1| error-prone DNA polymerase [Rhodobacter capsulatus SB 1003]
 gi|294474515|gb|ADE83903.1| error-prone DNA polymerase [Rhodobacter capsulatus SB 1003]
          Length = 1116

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 273/1071 (25%), Positives = 444/1071 (41%), Gaps = 104/1071 (9%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC--- 63
             S ++  L V S+++ L GA     ++ + A     AIAITD N+L   +          
Sbjct: 11   NSTAYAELCVTSNFTFLTGASHPEELVARAAELGLAAIAITDRNSLAGVVRAFSALKTLR 70

Query: 64   ---AAGIQPIIGCQLDI------DMQDNLKMTNQGKTPFPTVPSI--------------- 99
                A         L I      D      +      P P  P +               
Sbjct: 71   QETEA---------LRIRSASRTDPSSRQSLDPAAPLPRPETPDLPRLIIGTRLALRDCA 121

Query: 100  ---VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
               + L +    Y+RL +L++       GK    + L  L   G  GLI++         
Sbjct: 122  TEFLALPTDRPAYERLSQLLTLGKRR-AGKGDCALNLDDLVAGGA-GLILI--------- 170

Query: 157  RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATN 215
             A       +A   L   ++ F  ++++    R+ G D+        LA     P+VA  
Sbjct: 171  -ALPPPELALALAPLHRLQRQFPGQVFLGAAPRYDGTDQAWFRGCADLALRASTPMVAVG 229

Query: 216  NSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENT 274
            + L          DVL  +    T+ +   R     +  LK  +EM  +F   P A+  T
Sbjct: 230  DVLMHRAARRPLADVLTCLRAGLTIDAIGTRALPNAERRLKGPAEMARLFRHHPAAIRRT 289

Query: 275  VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
            +EIA RC+F L   +   P       +D  +  +  L   A  GL  R  QGA      +
Sbjct: 290  LEIAARCAFDLAELSYDYP------GEDDTEPPQARLERLAQEGLARRYPQGA------S 337

Query: 335  QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
            +   Q L  EL ++  + ++ YFL V D +Q+A+   I    GRGS A S+  Y L ITD
Sbjct: 338  ERVHQLLAKELGLVGELGYAPYFLTVQDIVQFARSRGIL-CQGRGSAANSILCYLLGITD 396

Query: 395  IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
            + P    ++FERF++  R   PD D+DF  +RR+EVI+++  KYG +R     T    + 
Sbjct: 397  VSPDMIGMVFERFISRHRGEPPDIDVDFEHERREEVIQWIYEKYGRDRAGLCATVIHFRT 456

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIP---NDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            +AA+R+VG+ + +       L   I    N  A P  L+ I  +   R   L    +  +
Sbjct: 457  RAAIREVGKVMGLSADVTAALAGQIWGLSNRGADPARLREIGLNPEDRRLALTIRLISEI 516

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
            +       G  RH S H  G VI    L  L P+           +++   I+  G++K 
Sbjct: 517  I-------GFPRHLSQHVGGFVITRGRLDALCPIENAAMEGRTCIEWDKDDIDALGILKV 569

Query: 572  DFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            D L L  LT L+KS D L +    ++DL+ +P +D  TY +LT    +G+FQ+ES     
Sbjct: 570  DVLSLGMLTCLRKSFDLLERHKGLRLDLAKVPQEDPATYAMLTRADAVGVFQVESRAQMN 629

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
             L  M+P    D++  V++ RPGPI   +   Y  R+ G E      P +  +  +T GV
Sbjct: 630  FLPRMKPATFYDLVIEVAIVRPGPIQGGMVKPYIRRRQGLEAPEPFGPALAAVTAKTLGV 689

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAV 747
             ++QEQ MQIA + +GYS  EAD LRR++    +   +   ++RF+SG ++ G    +A 
Sbjct: 690  PLFQEQAMQIAVVGAGYSAEEADQLRRSLASFRRMGTIGAHRDRFVSGMTERGYPLAVAE 749

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
              F  +  FADYGF +SHAAA+A+++Y ++W+K H+P  F  A +  +        +  +
Sbjct: 750  ACFAQIEGFADYGFPESHAAAFAMLTYVSSWLKCHHPEIFACALLNSQPMGFYAPAQIVR 809

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPF 862
            D R+  +++ P  VN    D  +         +      IKG     A  I+ A  +  +
Sbjct: 810  DLREHGVEVRPICVNRSDWDNALERRADGRLALRLGFRQIKGFRAEDAGWIVAARGNG-Y 868

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
              +E    R          LE L  A A    G +R   L ++  I          R  K
Sbjct: 869  PDVESLWLRAGLLP---SPLERLAEADAFAGLGLTRRDALWAVRAI----------RAPK 915

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
               +FA+                 +       +   L      HP+++ +P L  +    
Sbjct: 916  PLPLFANPLDGEGGIEPAVTLPPMHLGEEVVEDYIALRLTLRAHPMELLRPGLPGL---T 972

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + + T       +  +V+++Q+  T  G  + ++T  +         +P
Sbjct: 973  CHDRLVTAPLQRTAVCGLVITRQRPGTASG--VIFLTLEDETGVANIVVWP 1021


>gi|119504394|ref|ZP_01626474.1| Pantoate-beta-alanine ligase [marine gamma proteobacterium HTCC2080]
 gi|119459902|gb|EAW40997.1| Pantoate-beta-alanine ligase [marine gamma proteobacterium HTCC2080]
          Length = 1006

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 260/1012 (25%), Positives = 442/1012 (43%), Gaps = 71/1012 (7%)

Query: 33   LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92
            +++ AA    A+AITD  +L   ++    A    I+ IIG + ++               
Sbjct: 1    MERAAACGYSALAITDECSLAGVVKAHVAAKRCAIKLIIGSEFNLV-------------- 46

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  +V L    E Y  L  L+SR        +        +  +    +I + G S 
Sbjct: 47   --EGIRLVALAPNREAYAELSGLISRSRRRSPKGEYTTRLRDVIFHLKRCLIIWIPGDSD 104

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPL 211
              +                    +L   R ++   R  G D   R  Q   LA    LPL
Sbjct: 105  HEMGTG-------------QQLARLCPGRTWIGSSRLLGNDEMRRFRQRWDLAQKLNLPL 151

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            VA  +    S      HDVL A+ H+T VS+    R+  +     R+    +    P  +
Sbjct: 152  VACGDVRMHSASRKRLHDVLTALNHNTTVSKLGLRRL-ANSQQHLRTLEKLLPLYPPSLI 210

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
              T+ I+++C F L       P  +     D        LR +   G   R   G     
Sbjct: 211  GETLRISQQCQFNLDELRYEYPEEVIPTGQD----ANTYLREQVALGAAQRWPNGV---- 262

Query: 332  YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
                  + R+  EL +I+ + +  YFL V D +++A++  I    GRGS A SV  Y L 
Sbjct: 263  --PSAVQSRIQHELVLISELDYEYYFLTVYDLVRFARERQIL-CQGRGSAANSVVCYCLH 319

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            IT+++P + +LLFERF++ +R   PD D+DF  +RR+EVI+Y+  KY   R A   T  +
Sbjct: 320  ITEVNPEQVNLLFERFISRERDEPPDIDVDFEHERREEVIQYIYRKYTRRRAALAATVIT 379

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
             ++++A+RDVG+AL +    V+ L K +          Q        +   +        
Sbjct: 380  YRSRSAVRDVGKALGLDPILVEDLAKSLAWWNREGELRQRFEQ----QGMGMPGKQAQIF 435

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
            L++ Q++ G  RH S H  G VI   P+S LVP+      +  V Q++ + IE  GL+K 
Sbjct: 436  LDLVQEILGFPRHLSQHVGGFVISRGPISNLVPVENASMDERTVIQWDKEDIEALGLLKV 495

Query: 572  DFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            D L L  L+ ++K+L  +  +      +  IP +D  TY +L +  +LG+FQ+ES     
Sbjct: 496  DVLALGMLSAIRKTLALVHRENPQIKRIQDIPREDQATYKMLQSADSLGVFQIESRAQMS 555

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGV 688
             L  ++P C  D++  +++ RPGPI   +V+    RK+G E +   +  I  +L+ T GV
Sbjct: 556  MLPRLKPACFYDLVIEIAIVRPGPIQGDMVHPYLRRKHGLEAVTYPNDAIKSVLEPTLGV 615

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM-DKQKERFISGASKNGISKTIAV 747
             I+QEQV+++A + +G++  EAD LRRA+    +       +++   G  + G S   + 
Sbjct: 616  PIFQEQVIRLAMVAAGFTGGEADALRRAITNWGRNSKLLTFEKKLKDGMRERGYSTEFSN 675

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             +F+ +  F  YGF +SH+A++A+++Y +AW+K HYP  F    +  +        +  Q
Sbjct: 676  RLFDQIKGFGGYGFPESHSASFALLAYVSAWLKCHYPTAFYIGLLNSQPMGFYTPSQLIQ 735

Query: 808  DARQFNIQIMPPSVNTPCVDFKV------GDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
            DA++  + ++P  VN    + ++      G   I   L  IKG+       I +A    P
Sbjct: 736  DAQRHGVTVLPADVNHSEWNHQLLSQTDQGQPPIRLGLRLIKGLNKHAGHRIADAQRQMP 795

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            F S+ D   R    +L++  +E L  A AL      R Q    +  +Q  +  +      
Sbjct: 796  FKSISDLRGRA---QLDKGDMEVLASADALKSVSGHRHQSQWQIMALQTPSPLLR----- 847

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
              +  +  +    SD I L      + +     + +  G     HPL + +        +
Sbjct: 848  --DTPYETKPEDLSDHIELP---TPSVAENVMADYQSTGVTLRDHPLALLREQSPFNQCR 902

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             Y E  A      +R+A +V  +Q+  T  G  + ++T  + +  +    +P
Sbjct: 903  KYSELSALGNNRFVRIAGIVTCRQRPGTASG--VVFLTLEDESGNHNVVVWP 952


>gi|319948757|ref|ZP_08022877.1| error-prone DNA polymerase [Dietzia cinnamea P4]
 gi|319437590|gb|EFV92590.1| error-prone DNA polymerase [Dietzia cinnamea P4]
          Length = 1049

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 288/1050 (27%), Positives = 467/1050 (44%), Gaps = 86/1050 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  H+++S L+GA S   + +  A     A+AITD + L+  + F++ A   G+  +
Sbjct: 3    YAELHAHTAFSFLDGASSPEAMAEAAAELGLTALAITDHDGLYGVVRFAEAASELGLATV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +                P    +++L    EGY+RL   ++R +L    K   R
Sbjct: 63   FGAELSL----------------PGGEHLLVLARGQEGYRRLSRAIARAHLRGGAKGEPR 106

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-------SSQVAEKRLLTFKKLFG-DRL 182
              ++ L E       +LTG   G + RA            ++ A   L    +LFG DR+
Sbjct: 107  YEITELAEAAGGHWYVLTGCRRGRVRRALERGGTGGPDFDTEAARTALEQLVELFGRDRV 166

Query: 183  YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-VAHSTVV 240
             V L  H    D  R   +  LA    LP+VAT  +     E      V+ A  A   + 
Sbjct: 167  VVELTCHGVPEDTERCDALAGLAARAGLPVVATTAAHCAGPEGARLASVMAALGARDALE 226

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            +           +L++  EM  +F   P+A+     + R C+F L++ AP LP F   E 
Sbjct: 227  THAAHLPAAGGAHLRSGEEMADLFDRWPDAVAGADRLGRECAFDLRLIAPQLPPFDVPEG 286

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                  E+  L   A AG   R       +    + Y  ++  EL VIA + F GYFL+V
Sbjct: 287  ----HTEDTMLAELAYAGAARRYG----TREEMPEAY-AQIGRELKVIAELGFPGYFLVV 337

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +++ ++  I    GRGS A S   Y+L IT++DP+R  LLFERFL P+R   PD D+
Sbjct: 338  HDIVEFCRREGIL-CQGRGSAANSAVCYSLGITNVDPVRAQLLFERFLAPERDGPPDIDV 396

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D    RR+E I+YV ++YG +  AQ+    + + ++A+RDV RAL     Q D   K + 
Sbjct: 397  DIESGRREEAIQYVYSRYGRDYAAQVANVITYRGRSAVRDVARALGYSPGQQDAWSKSVD 456

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                                          +L ++++L GL RH   H+ G+VI DRP++
Sbjct: 457  RWSGLK----------NHEGEATEHTVPPDVLALARQLVGLPRHLGIHSGGMVICDRPVA 506

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLS 599
             +VP+         V Q++       GL+KFD LGL  LT L  ++D  A+     VDL+
Sbjct: 507  DVVPVEWARMPGRTVLQWDKDDCAAVGLVKFDMLGLGMLTALHHAIDLAAEHKDLDVDLA 566

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--N 657
             +   D + Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   +
Sbjct: 567  KLDLADPQVYEMLCRGDSVGVFQVESRAQMATLPRLRPRTFYDLVVEVALIRPGPIQGGS 626

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            +  Y  R+NG+EK+   HP ++ +L  T G+ ++QEQ+MQIA +++G++ +EAD LRRAM
Sbjct: 627  VHPYIRRRNGREKVEFDHPALEEVLGRTLGIPLFQEQLMQIATVIAGFTGAEADQLRRAM 686

Query: 718  -GKKIKEEMDKQKERFISGASK-----------NGISKTIAVNIFELLAKFADYGFNKSH 765
              K+  E M + KERF +G  +                 +   I+E +  FA+YGF +SH
Sbjct: 687  GAKRSPERMARLKERFFAGMRELHGIGTSPPGTPYTGPEVGERIWEKMCAFANYGFPESH 746

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            + ++A I Y +AW K H+P  F AA +  +       +    DAR+  + +  P VN   
Sbjct: 747  SQSFAAIVYYSAWFKCHHPAIFCAALLRSQPMGFYSPQSLVADARRHGVTVHRPCVNRSL 806

Query: 826  VDFKVGDN--RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVL 882
                  ++   +   L +++ +G   A  I +   +  P+ S  D   R     L+ R +
Sbjct: 807  GGATCENDGTEVRLGLESVRAIGEDLATAIADERDSHGPYTSAADLAGRT---GLSVRQM 863

Query: 883  ESLVFAGALDCFG-YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            E+L  AGALD  G   R             A    + +      +          ++   
Sbjct: 864  EALATAGALDSLGTGGRR-------AALWSAATAAREKPGMLPGL---------SQVDAP 907

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                 +       +    G     +P    +P L   G+           G+ IR+A  V
Sbjct: 908  ALPGMSLLELTSADLAATGISPEEYPTVHARPWLDSQGVCTTAGLAHVPDGSRIRVAGAV 967

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
              +Q+  T +G  + +++  +         
Sbjct: 968  THRQRPATAEG--VTFLSLEDETGMTNIVC 995


>gi|115523844|ref|YP_780755.1| error-prone DNA polymerase [Rhodopseudomonas palustris BisA53]
 gi|122296746|sp|Q07QK9|DNAE2_RHOP5 RecName: Full=Error-prone DNA polymerase
 gi|115517791|gb|ABJ05775.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisA53]
          Length = 1153

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 257/1106 (23%), Positives = 432/1106 (39%), Gaps = 125/1106 (11%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P +  + V S++S LEG       + + +A    AI I D N L   +    +   
Sbjct: 1    MT-APRYAEIGVTSNFSFLEGGSHPQEFVQQASALGLAAIGIADRNTLAGVVRAYSELDN 59

Query: 65   AGI----QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
              +    + +IG +L                     P I+   +    Y RL  L+S   
Sbjct: 60   EELFYKPKLLIGARLCFADG---------------TPDILAYPTDRAAYGRLCRLLSAGK 104

Query: 121  LLDQGKQSVRICLSWLQEI-----------------GTEGLIMLTGGS-----------S 152
            L   GK    +  + L+                    ++ + +                +
Sbjct: 105  LR-AGKGECHLSFADLEAFTKTSTPSWPGLSRPSTSSSKAVQVSVDARVKPGHDEAKRAA 163

Query: 153  GPIDRAFF------FNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAY 205
            G   R            S      L     L G  +++ L  + RG D+ R +++ ++A 
Sbjct: 164  GE-SRLLLVLMPPYRFQSHEITAALTRLTALQGAGVWLALVPYYRGDDKRRLARLQRIAA 222

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR-SEMVSIF 264
               +P +A+N+ L+  E      DVL  V   T + +  R   +          EM  +F
Sbjct: 223  AARVPGIASNDVLYHHESRRALQDVLTCVRDKTTIDKAGRLLESNAERYLKPTEEMARLF 282

Query: 265  SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
               P+A+  T+  A R SF L       P           K  +  L++    G+     
Sbjct: 283  RADPDAIAETLRFADRISFTLDELKYQYPDEPVPPG----KTAQQHLKDLTEQGIAEYFP 338

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
             G  A        R  +D EL +IA  +++ YFL V D +++A+  NI    GRGS A S
Sbjct: 339  NGIDA------KLRATIDKELTIIAHRQYAPYFLTVHDIVRYARSQNIL-CQGRGSAANS 391

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
               Y L IT +DP    LLFERF++ +R   PD D+DF   RR+EV++Y+  +YG  R A
Sbjct: 392  AVCYVLGITCVDPTEIDLLFERFVSEERDEPPDIDVDFEHSRREEVMQYIYRRYGRHRAA 451

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
             + T    + ++A+RDVG+AL +       L   +       ++        R       
Sbjct: 452  IVSTVIHYRPRSAIRDVGKALGLSEDVTAALADTVWGSWGKGLN----EMQVRQAGLDPT 507

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            +P + R ++++ +L G  RH S H  G V+    L + VP+      +    +++   I+
Sbjct: 508  NPMIVRAIDLATELIGFPRHLSQHVGGYVLTQDRLDEFVPIGNAAMEERTFIEWDKDDID 567

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD--LSLIPFDDHETYHLLTTKGTLGIFQ 622
               ++K D L L  LT ++K  D +AQ   K      +   DD+E Y +L    ++G+FQ
Sbjct: 568  AVKMMKVDVLALGMLTCIRKGFDLIAQHKGKRYELADIKSEDDNEVYKMLQRGESVGVFQ 627

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHP---- 676
            +ES      L  ++P C  D++  V++ RPGPI   +V+    R+NG+E +V   P    
Sbjct: 628  VESRAQMNMLPRLRPRCFYDLVIEVAIVRPGPIQGDMVHPYLRRRNGQEPVVYPSPAGHA 687

Query: 677  ----LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKER 731
                 +  +L +T GV ++QEQ M+IA   + ++  EA+ LRRAM        + K + +
Sbjct: 688  GEANELKTILGKTLGVPLFQEQAMRIAIEAAHFTPDEANQLRRAMATFRNVGTIGKFEAK 747

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
                    G     A N FE +  F  YGF +SHAA++A + Y +AW+K  +P  F  A 
Sbjct: 748  MTGNLVARGYDPVFAQNCFEQIKGFGSYGFPESHAASFAKLVYVSAWLKHAHPDAFCCAL 807

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----NRIYYSLAAIKGVG 846
            +  +        +   DARQ  ++I    V        + +     + +      I G  
Sbjct: 808  LNSQPMGFYAPAQIVGDARQNGVEIRGVDVAYSFSQNTLEERCGQHHAVRLGFRQIDGFR 867

Query: 847  ------------------TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                                    I+EA    PF SLE F     +  L +R L  L  A
Sbjct: 868  WADFDEANLWQARGDAPPEDWGARIVEAREKSPFTSLEQFAR---ATALPKRALILLADA 924

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
             A       R   L ++  +                 +F   K             +   
Sbjct: 925  DAFRSLKLDRRAALWAVRRLPDDV----------PLPLFEVAKAREQQDENAAPLPLMPL 974

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT-IRGNNIRLAAMVVSKQQK 1007
            +     + + +     GHP+   + +    G+        T   G   R A +V+ +Q+ 
Sbjct: 975  AEHVVADYQTVRLSLKGHPMQFLRALFAAEGVNTCRAVSETRRNGRRARCAGVVLVRQRP 1034

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + KG  + ++T  +         +P
Sbjct: 1035 GSAKG--VVFITLEDETGIANLVVWP 1058


>gi|149926945|ref|ZP_01915204.1| DNA polymerase III, alpha subunit [Limnobacter sp. MED105]
 gi|149824497|gb|EDM83715.1| DNA polymerase III, alpha subunit [Limnobacter sp. MED105]
          Length = 1046

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 268/1042 (25%), Positives = 446/1042 (42%), Gaps = 77/1042 (7%)

Query: 9    PSFVH-LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            P F   L   S++S L+ A     ++ +       AI ITD  +L   +   Q A   GI
Sbjct: 9    PPFAETL-ALSNFSFLKSASHAEELVQQAKLLGYSAIGITDECSLAGIVRAHQVAKECGI 67

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            Q ++G Q                        I L+V    GY  L  L+++       K 
Sbjct: 68   QLLVGAQFVFARSSAF-----------AGQRIALIVKNKTGYTHLCRLITQARSR-ATKG 115

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV--N 185
                    L +I     ++L                 +     L    K F  RL+V  N
Sbjct: 116  DYLFTRDDLADIPPGLQLLLVPDERS----------KENFTALLSWCAKRFTGRLHVVCN 165

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            LQ HRG+DR     +  LA+ H + L+A+N  +  S E    HDVL A+  +  ++    
Sbjct: 166  LQ-HRGFDRPWLLYLQALAHLHGVELMASNLPVMHSSERKNLHDVLTAIRLNCKLNDAKP 224

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               T         + ++        L+ TV +A +C F L       PR I  E      
Sbjct: 225  FLETNAQRCLQPLQQLAQT-YPHRLLQQTVTLAAQCVFSLDELRYQYPREISPEG----L 279

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            E    LR     G   R +    A        +++++ EL +I  ++F  YFL V D ++
Sbjct: 280  EPTQYLRQLVEEGAAQRYSSNVPA------KVKKQIEHELQLIEELQFEAYFLTVYDIVR 333

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  NI    GRGS A SV  Y L IT+++P + ++LFERF++ +R   PD D+DF   
Sbjct: 334  FARSRNIL-CQGRGSAANSVVCYCLHITEVNPDKMAVLFERFISRERNEPPDIDVDFEHT 392

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG +R A   +    + ++ALRDVG+AL +    V++L K      + 
Sbjct: 393  RREEVIQYIYQKYGRDRAALAASVVVYRPRSALRDVGKALGLDTDLVEQLAKSQDGGYSR 452

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             +S+  +          +    V   + ++ +L G  RH S H  G VI    L++LVP+
Sbjct: 453  SMSVDHMIQ----AGIDVHQSGVQHCVHLADELLGFPRHLSQHTGGFVIARDSLTELVPV 508

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFD 604
                  +  V Q++   ++  GL+K D L L  L+ ++ +LD L ++      L  IP +
Sbjct: 509  ENASMPERSVIQWDKDDLDAMGLMKVDVLALGMLSAIRMTLDELHRKPDAPRTLQAIPPE 568

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D+ TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   +V+   
Sbjct: 569  DNATYDMMCKADTVGVFQIESRAQMGMLPRLRPQQYYDLVIQVAIVRPGPIQGGMVHPFL 628

Query: 665  KNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-I 721
            K  +  E +      +   L  T+GV I+QEQVMQ+A L +G+S  EAD LRR M     
Sbjct: 629  KRRQGLEAVNYPSDALKEALGRTEGVPIFQEQVMQVAILAAGFSPGEADALRRGMAAWKR 688

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K  +    ER ++G  + G ++  A +IF+ +  F +YGF +SHAA++A++ Y +AW+K 
Sbjct: 689  KGGLHHFYERVVNGMLERGYTREFAESIFKQMEGFGEYGFPESHAASFAMLVYASAWLKC 748

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-----IY 836
            H+P  FL   +  +        +  QDA++  + ++P  V    ++ ++ +       + 
Sbjct: 749  HHPDAFLCGLLNAQPMGFYAPSQLIQDAQRHGVTVLPVDVQCSSLETQLENCTGDFLPVR 808

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK------LNRRVLESLVFAGA 890
              L  + G+    A  I++      F+S+ED   R    +       +   LE L     
Sbjct: 809  LGLNRVNGLKHDAALRIVQTREKGLFESVEDLTKRARLDRGDLLALADANALEKLA---- 864

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
                   R Q +      +        N T    N+ ++ +   +      +    +   
Sbjct: 865  -----GHRRQAVWQTAATETSGIRHNANNT----NLLSNTRSNETPL----ELPKASELE 911

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                + R  G     HP+   +  L    IK  EE      G   R   +V  +Q+  T 
Sbjct: 912  DMLADYRATGSSLQHHPISFLRKQLAPYKIKQVEELRTYPNGRLARACGIVTHRQRPATA 971

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
             G+   ++   +         +
Sbjct: 972  HGT--VFLNLEDETGNVNVIVW 991


>gi|323359224|ref|YP_004225620.1| DNA polymerase III, alpha subunit [Microbacterium testaceum StLB037]
 gi|323275595|dbj|BAJ75740.1| DNA polymerase III, alpha subunit [Microbacterium testaceum StLB037]
          Length = 1137

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 274/1076 (25%), Positives = 458/1076 (42%), Gaps = 106/1076 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HSSYS L+GA S   ++++       A+A+TD +  +  + F++ A A  +Q +
Sbjct: 59   YAELHAHSSYSFLDGASSPEELVEEAERLGLHALAVTDHDGFYGIVRFAEAAEARAVQTV 118

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +++        Q     P    +++L    EGY RL   ++   L    K    
Sbjct: 119  FGAELSLELP-----APQKGEADPAGSHLLVLARGEEGYHRLAAAITHAQLTGAEKGRPV 173

Query: 131  ICLSWLQEIGTE----GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
              L+ L E           +LTG   G + +A      + A + L     LFG + ++V 
Sbjct: 174  YDLAELSERSGGPADPHWAVLTGCRKGAVRQALASAGPEAAARELDALVDLFGAEAVFVE 233

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            L       D      +  LA    LP++ATNN  +   E       + AV  +  + + D
Sbjct: 234  LMDQGNPLDSRHNDVLAGLAAERGLPILATNNVHYAVPEKELLAAAVAAVRANRGLDELD 293

Query: 245  RPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     +L++ +EM + F+  P A+  TV +A   +F L+   P LP+    E    
Sbjct: 294  GWLPAHAGAHLRSGAEMAARFARYPGAVARTVTLADELAFPLRRAKPALPKQDVPEG--- 350

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                 + LR+     +  +           + + R R++ EL VI    F GYFLIV   
Sbjct: 351  -HTPMSWLRHLVWEAVPRKYPN-------LSDEDRDRIERELGVIEMKDFPGYFLIVYGI 402

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +  A++  I    GRGS A S   + L IT +D + + L FERFL+  R   PD D+DF 
Sbjct: 403  VAEARRRGIL-CQGRGSAANSAVCFLLEITAVDSIFYKLPFERFLSSLRDEEPDIDVDFD 461

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             DRR+E+I++V   YG ER AQ+      + K A+RD+ RAL     Q D   K +    
Sbjct: 462  SDRREEIIQWVYETYGRERAAQVANVIQYRPKNAVRDMARALGHSPGQQDAWSKQVERWG 521

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            A               E        D+++E + +L    RH   H+ G+V+ DRP+ ++V
Sbjct: 522  AT-------------LETGADHDIPDQVIEFAAELLKAPRHLGIHSGGMVLTDRPVGEVV 568

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP 602
            P+      +  V Q++       GL+KFD LGL  L  LQ   D +    G   +LS +P
Sbjct: 569  PIEHARMENRTVIQWDKDDAAWMGLVKFDLLGLGMLAALQYCFDLIRDATGEAWELSTLP 628

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660
             ++   Y +L    ++G+FQ+ES      L  +QP    D++  ++L RPGPI    +  
Sbjct: 629  KEEKAVYDMLCRADSIGVFQVESRAQMGLLPRLQPRKFYDLVVQIALIRPGPIQGGAVHP 688

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            +  RK G+E+I  +HP + P+L+ T GV ++QEQ+MQ+A  +   +  +AD LRRAM  K
Sbjct: 689  FVRRKLGQEEITYVHPKLKPVLERTMGVPVFQEQLMQMAVAVGNCTAEDADQLRRAMGSK 748

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            +  E +D  +E+   G ++NG+   +A  ++  +  FA++GF +SH+ ++A++ Y ++W+
Sbjct: 749  RGLERIDSLREKLYEGMAENGLVGHVADELYAKIQAFANFGFAESHSLSFALLVYASSWI 808

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV------------------ 821
            K HYP  FLA  +  +            DAR+  +++  P +                  
Sbjct: 809  KLHYPAAFLAGLLRAQPMGFYSPATLTADARRHGVRVRRPDLLRSGVEAGMEPLDDAGER 868

Query: 822  ------------NTPCVDFKVGDN------------RIYYSLAAIKGVGTTTARHIMEAS 857
                          P  +F   +              +   LA + G+GT  A  I+   
Sbjct: 869  GPTGLDACAEAHQPPTGEFDRSEPDETAAHRRDGAFAVRLGLAGVTGIGTNVAERIVSER 928

Query: 858  A-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ-SLDNIQKYAQWV 915
                 +  + D   R          LE+L  AGA +  G+SR + +  S        +++
Sbjct: 929  ERGGAYRDMRDLVRRTGLIT---AQLEALATAGAFESLGHSRREAIWLSGSAALDRPEFL 985

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
              +       +F                +   S     ++    G     HPL  ++  L
Sbjct: 986  PDSLVAVQPPLF----------------TDPTSYELLASDLWATGLSADDHPLTHFRSAL 1029

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
               G+    E         I +A +V  +Q+  T  G  I ++   +         
Sbjct: 1030 DARGVLTSRELQTAETDRRIEVAGLVTHRQRPATASG--ITFLNLEDEHGLMNIIC 1083


>gi|187478521|ref|YP_786545.1| error-prone DNA polymerase [Bordetella avium 197N]
 gi|115423107|emb|CAJ49638.1| putative DNA polymerase III alpha subunit [Bordetella avium 197N]
          Length = 1048

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 271/1035 (26%), Positives = 436/1035 (42%), Gaps = 65/1035 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-GI 67
            P +  L   S++S L GA     ++++ A     A+AITD  +L   +    +A    G+
Sbjct: 6    PGYAELDCQSNFSFLTGASHPEELVERAAKLGYAALAITDECSLAGVVRAHVEAGKHPGL 65

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + +IG +L +D   +  +             +VLL    EGY  L EL++        K 
Sbjct: 66   KLLIGSRLRLDNGTHTPIE------------LVLLACDKEGYGNLAELITLGRTR-AVKG 112

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL- 186
               +  + L   G EG   + G  +  I    +  +      +     + F  R +V L 
Sbjct: 113  QYLLRPADLTAQGPEG--GVPGCLA--ILTPAYGQAPAEMAAQAQWLARHFPGRAWVGLA 168

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            Q  R  D    + V   A    LPL A + +          HD L A+     V  +   
Sbjct: 169  QLQRSRDDLHRAAVQAAAQAANLPLAAISQAQMHVRSRKPLHDTLAAIRSGRSV-AECGY 227

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +  +     RS +         AL  T+ IA RC+F L       P  I    +     
Sbjct: 228  DLAANAERHLRSRLRLAGLYPASALHQTLAIAERCTFSLDEIRYEYPDEIVPAGE----T 283

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR     G   R   G  A+       R  ++ EL +I  +++  YFL V D +++
Sbjct: 284  PASYLRRATYEGAAARFPDGIPAQ------VRNLIEKELALIIELRYEAYFLTVHDIVRF 337

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+   I    GRGS A S   + L IT +DP   + LFERF++ +R   PD D+DF   R
Sbjct: 338  ARSAGIL-CQGRGSAANSAVCFCLGITAVDPSNGNALFERFISKERNEPPDIDVDFEHQR 396

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG  R A      S + ++ LRD GRAL +  + +D + +         
Sbjct: 397  REEVIQYIYRKYGRPRAALTAVVISYRPRSVLRDTGRALGLDQALIDAVARAHQWWDGKK 456

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L+ +                 +   +++ L G  RH S H  G VI    LS+LVP+ 
Sbjct: 457  EMLRTLGQC----GLDPGSRVARQWAILAETLIGFPRHLSQHPGGFVISRGKLSRLVPIE 512

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDD 605
                 D  V Q++   ++  GL+K D L L  L+ L+++L+ ++QR  +   L  IP DD
Sbjct: 513  NATMEDRSVVQWDKDDLDALGLLKVDVLALGMLSALRRALELVSQRRAQPLALHQIPPDD 572

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
              TY ++    T+G+FQ+ES      L  +QP    D++  V++ RPGPI   +V+    
Sbjct: 573  RATYDMICRADTVGVFQIESRAQMSMLPRLQPRAYYDLVVQVAIVRPGPIQGGMVHPYLR 632

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IK 722
            R+ GKE I      I+ +L+ TQGV I+QEQVMQIA   +G++  EAD LRR+M     K
Sbjct: 633  RRQGKEPISYPGKAIEKVLERTQGVPIFQEQVMQIAVEAAGFTPGEADQLRRSMAAWRRK 692

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              +DK + + I G   +G     A  +F  +  F +YGF +SHAA++A ++Y +AW+K H
Sbjct: 693  GGVDKFRLKLIGGLLAHGYGLDFAEALFRQIEGFGEYGFPESHAASFAQLAYASAWIKCH 752

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--FKVGDN----RIY 836
             P  FLAA +  +        +  QDAR+  + ++P  +     +  F+         + 
Sbjct: 753  EPEAFLAALLNSQPMGFYAPAQLVQDARRHGVVVLPVDITRSRWEAGFETLPGQSRPAVR 812

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L   +G+       I  A  ++P+  + D   R    +LNR+ L++L  A AL     
Sbjct: 813  LGLNQTRGLKQEAGERIAAAHREQPYRDVADLGRRA---RLNRQELDALAAADALRPLAG 869

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R Q      +       + +                   +         +       + 
Sbjct: 870  HRRQARWQAASGVYRRDLLHEA---------------PVIETEHPALPAPSEGQTVVADY 914

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
              LG     HPL + +  L +   +              R   +V  +Q+ +T KG+   
Sbjct: 915  ESLGLSLRRHPLSLLRAELAERRFEPASVLNTYPDRRLARACGIVTVRQRPQTAKGT--I 972

Query: 1017 WVTFSEPAKEYEANF 1031
            +VT  +         
Sbjct: 973  FVTIEDETGPVNVVV 987


>gi|149184845|ref|ZP_01863163.1| DNA polymerase III alpha chain [Erythrobacter sp. SD-21]
 gi|148832165|gb|EDL50598.1| DNA polymerase III alpha chain [Erythrobacter sp. SD-21]
          Length = 1216

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 255/1107 (23%), Positives = 445/1107 (40%), Gaps = 128/1107 (11%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             ++P FV L + S +S L GA    +++ +  A    AI I D N +   +    +A   
Sbjct: 40   SRAP-FVELGLVSCFSFLRGASDAVDLVLQARALGYDAIGIADANTMAGVVRVHTEAKTL 98

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-- 123
             ++P IGC++                      + +    + + Y RL  L+S   +    
Sbjct: 99   KLKPCIGCRI----------------ETVEGLAFLAYPKSRKAYGRLCRLISAGRMRTLS 142

Query: 124  ---QGKQSVRICLSWLQEIGTEG--LIML------------------------------- 147
               Q K    I L  L +  + G  LI++                               
Sbjct: 143  GEWQEKGECDISLEMLAK-HSAGVQLILIPPRDLDQTFTIEVESNVVPFRHPGPRAGVPL 201

Query: 148  ----TGGSS---GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV 200
                +G      G +DR     S +     L    +L   R       +   D  +  Q+
Sbjct: 202  PSKESGPPDQVRGDVDRVHMEGSFEDILPHLA--AQLPTLRYIAAAFLYTDSDVAQIEQL 259

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSE 259
              LA  + L ++ATN+  + + +     DV+ A+ H T V++         + YLK    
Sbjct: 260  DTLAKANGLSILATNDVHYATPDKRPLQDVMTAIRHKTTVARAGHLLHGNAERYLKPPET 319

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            M  +F   P A+    E+A  C F L       P  +         E ++ L ++   G 
Sbjct: 320  MCRLFERWPHAISAAREVADACDFSLDELQYEYPEELYPGG----AEPQDYLESETWKGA 375

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV--GPG 377
            E R  +G              L  EL +I +M  + YFL + D + +A++   P     G
Sbjct: 376  EWRYPEGV------PDSVTDTLHKELALIGKMDLARYFLTIKDIVDFARQKVDPPILCQG 429

Query: 378  RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
            RGS A S   Y L IT++DP +  LLF+RF++ DR   PD D+DF  +RR+EVI+Y+  K
Sbjct: 430  RGSAANSAVCYCLGITNVDPAQHQLLFDRFISEDRKEPPDIDVDFEHERREEVIQYLYRK 489

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            YG  R     T    + + A+R+VG+A+ +       L K +       +S +   +   
Sbjct: 490  YGRHRAGLCATVIHYRPRMAIREVGKAMGLTEDVTAALAKTVWGGWGREISEKHAQET-- 547

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
                 + DP + R+L +++++ G+ RH S H  G ++ +  L++ VP+      +    +
Sbjct: 548  --GMDVTDPHLKRVLRLTEQMIGMPRHLSQHVGGFILTESALTETVPVGNGAMPERSFIE 605

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKG 616
            ++   IE  G++K D L L  LT ++K LD L     +   L+ +P +D ETY +L    
Sbjct: 606  WDKDDIEALGILKVDVLALGMLTCIRKCLDLLGDHHGRTLSLANVPREDPETYAMLRAGD 665

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG--------- 667
            +LG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+   K           
Sbjct: 666  SLGVFQVESRAQMNMLPRLRPRQFYDLVIQVAIVRPGPIQGDMVHPYLKRRRGAEPVVIP 725

Query: 668  -KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEEM 725
                       +  +L+ T GV I+QEQ M+IA   + +S  EA+ LR+AM     +  +
Sbjct: 726  APSPQHGPPDELSSILERTLGVPIFQEQAMKIALDAAKFSSKEANRLRKAMATFRSRGMV 785

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            D+ ++  +      G  +  +   F  +  F +YGF +SHAA++A + Y ++W+K H+P 
Sbjct: 786  DELQDMMVERMVHRGYDRDFSQRCFNQIRGFGEYGFPESHAASFAHLVYVSSWLKCHFPA 845

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-------------- 831
             F  A +  +        +  +DA +  ++++P  VN    D  +               
Sbjct: 846  AFACALLNSQPMGFYAPAQIVRDAAEHGVRVLPADVNLSQWDCTLEEIGEGRAVEGDSGR 905

Query: 832  -DNRI--YYSLAAIKGVGTT-TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             D  I     L  I G+     A+ I E  A+  ++ +     R  +       +E L  
Sbjct: 906  LDKHIALRLGLRQIDGLSEAVAAQLIAEREANGRYEDVRALRDRART---GPAHVERLAS 962

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVE 946
            A A      SR Q L    ++   A             +FA              +    
Sbjct: 963  ADAFGSMNLSRRQALWDARSLVGGAD----------LPLFAAAAARDEGAEKHATQLPQM 1012

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
              S     + +        HP+   +  L + G     +  A    + + +A +V+ +Q+
Sbjct: 1013 PLSEEVVADYQTTRLSLKAHPMAFLRASLAERGFVRACDLRAKKFRSMVHVAGVVLIRQR 1072

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + KG  + ++T  +         +P
Sbjct: 1073 PGSAKG--VCFITLEDETGVINLVVWP 1097


>gi|328881404|emb|CCA54643.1| DNA polymerase III alpha subunit [Streptomyces venezuelae ATCC 10712]
          Length = 1170

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 262/1073 (24%), Positives = 444/1073 (41%), Gaps = 74/1073 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL   S YSL  GA     +  + A     A+A+TD + L   + F++     GI+
Sbjct: 2    PGFTHLHTASGYSLRYGASHPERLAARAAERGMDALALTDRDTLAGTIRFAKACAKEGIR 61

Query: 69   PIIGCQLDIDM-----------------------------QDNLKMTNQGKTPFPTVPSI 99
            P+ G  L  +                                       G     + P  
Sbjct: 62   PLFGVDLAYEPTTPGPGRTPAASPGGDPRDVRRAPGRGPQDIRRVPVRGGAFVDESAPRA 121

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            + L  +  G+  L  +++  +    G     +  S L +   + + +L G  +  + RA 
Sbjct: 122  LFLARSRAGWASLCAMITAAH--AGGGDHPLLPWSALCD---DDVFVLLG-PASDVGRAL 175

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR----GYDRYRE-SQVVQLAYTHELPLVAT 214
                   A + L  +++ +GD L +    H     G    R  ++ V  A    +  V  
Sbjct: 176  AAGRPDRAVRLLAPWRERYGDALRLTAVDHGRSGTGPGSLRLAARTVGFAAEQGVRPVIG 235

Query: 215  NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENT 274
            N   +         DVL +      V  +                  +    +  A    
Sbjct: 236  NAVRYADPGQGPVADVLDSARRLVPVDPRKELDSGEAWLKGADGMRAAAERIVEAAGFRR 295

Query: 275  VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR-----LAQGAIA 329
                R       V A  L    +          E  L        +        A   + 
Sbjct: 296  DTAHRLLEQTATVAADCLVDPEDDLGIGSAHFPEPHLVGAEYRTAQRVLASRAAAGMILK 355

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                   Y  R+  EL+VIA  +F+ YFL VA  +   ++  I V   RGSGAGS+  + 
Sbjct: 356  GYEKRGAYWDRMHQELDVIAHHRFAPYFLTVAQVVDDVREMGIRVA-ARGSGAGSLVNHL 414

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L I   DP+   LL ERFL+  R ++PD DID    RR EV R + +++G  RVA +   
Sbjct: 415  LGIAHADPVEHGLLMERFLSKRRTALPDIDIDVESARRLEVYRAIIDRFGTARVATVAMP 474

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
             + + + A+RDVG AL +  + +DR+ K  P+  A      A+ +    RE         
Sbjct: 475  ETYRVRHAVRDVGAALSLDPADIDRIAKAFPHIRARDAL-AALDELPELRELAGERQKYG 533

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            +L E+ + L+ L R  + H  G+++ D  L    P+        P++QF+ + +E  GL+
Sbjct: 534  KLWELVEALDALPRGTAMHPCGVLLSDASLLARTPVVPTSGEGFPMSQFDKEDVEDLGLL 593

Query: 570  KFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K D LG++  + +  ++  + +  G + D+  +P  D ETY L+ +  TLG FQ+ES G 
Sbjct: 594  KLDVLGVRMQSAMAHAVAEVERATGTRPDIDAVPDGDPETYRLIRSTETLGCFQIESPGQ 653

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQ 686
            R  +  +QP    D++  +SL+RPGP+   +   +   ++G+  +   HP ++  L+ET 
Sbjct: 654  RDLVGRLQPATFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRYPHPDLEETLRETY 713

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GV+++ EQ+++I ++++G    EAD +RR +     E   + K  F   A+  G +  + 
Sbjct: 714  GVVVFHEQIIEIVRIMTGCRRDEADQVRRGLSD--PESQGRIKLWFTREAAARGYADEVV 771

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
               +E++A F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +   
Sbjct: 772  ARTWEIVAAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLL 830

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVG-------DNRIYYSLAAIKGVGTTTARHIMEASAD 859
             DAR+  + ++P  VN   V  ++           +   L  + G+    +  I    A 
Sbjct: 831  ADARRRGVPVLPLDVNRSAVAHRIELVSESKVRWGLRLGLTDVHGISEAESARI---EAG 887

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
            +P+ SL DF  R   +     V E L   GALD FG +R  LL  L  +++         
Sbjct: 888  QPYASLLDFWERARPRT---PVAERLAQVGALDAFGANRRDLLLHLTELRRI--QRGAAS 942

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                  +    +G  +  + L      + + R   E  +LG   S H +  +   LR++G
Sbjct: 943  HGGQLPL---AQGGKTAPVGLPDL---DETERLSAELGILGMDASRHLMGDHHAFLRELG 996

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   +    T  G  + +A    + Q    R G R+ + T  +     +  FF
Sbjct: 997  VVSAQRLRDTPHGRTVLVAGAKAATQTPPIRSGKRVIFTTLDDGTGLVDLAFF 1049


>gi|241206898|ref|YP_002977994.1| DNA polymerase III subunit alpha [Rhizobium leguminosarum bv.
            trifolii WSM1325]
 gi|240860788|gb|ACS58455.1| DNA polymerase III, alpha subunit [Rhizobium leguminosarum bv.
            trifolii WSM1325]
          Length = 1154

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 249/1084 (22%), Positives = 441/1084 (40%), Gaps = 113/1084 (10%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA---------- 62
             +   +++S LEGA     ++ + A  +   + I D N++   +    +A          
Sbjct: 9    EIGTRTNFSFLEGASGPEEMVVQAARLRLGGLGIADRNSVAGVVRAHAQAEQLEERYKNK 68

Query: 63   -------CAAG----------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
                      G          IQP  G +L                     P I+    +
Sbjct: 69   DAILAQAKKEGKKEEILDPIRIQP--GARLVFSDG---------------TPDILAYPRS 111

Query: 106  AEGYQRLIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS 164
              G+  L  L+S   L ++  K S  +  + L E G E ++ L    +  +         
Sbjct: 112  RRGWANLCRLLSAGNLKEEAVKGSCILTEAELMEWGDEMMLALVPDRT-LVGH---QAGQ 167

Query: 165  QVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEE 223
               E  L  F++ F    Y+ L   + G DR   + +  LA  + +PL+ATN  L+   E
Sbjct: 168  PTLEDYLERFRRRFRKAFYMALAPAYDGRDRQVFAVLAMLAARNRVPLIATNQPLYHHPE 227

Query: 224  DYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
                 DV++A+     +           + YLK+  EM  IF + P A+ENT     R +
Sbjct: 228  RRPLSDVVIAIREHVQISQAGFLLAPNAERYLKDSREMARIFREYPNAIENTQTFFDRLT 287

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
            F L+              +D  +  +  L     AG   R  +G             +++
Sbjct: 288  FSLKELEHNY-----PPENDPGETPQETLERLTRAGAARRYPKG------IPPKVAPQIE 336

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            +EL++I + K++ YFL V   IQ A+     +  GRGS A SV  Y L IT+++P + +L
Sbjct: 337  YELDLIKKKKYASYFLTVHRIIQHARYELKVLCQGRGSAANSVICYCLEITEVNPEKSTL 396

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            LF+RF++ DR   PD D+DF  DRR+EVI+++  +YG E         + + ++A R+V 
Sbjct: 397  LFDRFISMDRDEPPDIDVDFEHDRREEVIQFIYKRYGIEHAGLTAGVTTYRTRSAGREVS 456

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            +A  +       +  L+       +    +  D++     + DP    +L+ + +L G  
Sbjct: 457  KAFGLSEDVQSAISSLVWGWSEDNL----LERDAKAAGLDIKDPVTRNVLQYATELLGFP 512

Query: 523  RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            RH + H  G VI    L ++VP+ +    D  + +++   ++   ++K D L L  LT L
Sbjct: 513  RHLTQHVGGFVITRDRLDEVVPIMKTAMPDRYMIEWDKDDLDNVKILKVDVLALGMLTCL 572

Query: 583  QKSLDFLAQRGVKVDL------SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            +K+   L                    +    Y ++    TLG+FQ+ES      L  ++
Sbjct: 573  RKAFSLLELHYDVKKTLADLGNKEHGDEGEPVYEMMGRADTLGVFQIESRAQMSMLPRLK 632

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYN-----NRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            P    D++  V++ RPGPI   +V+       ++     I      ++ +L+ T GV ++
Sbjct: 633  PKVFYDLVIEVAIVRPGPIQGDMVHPYLKRREQRAKNIPIKYPSKELETVLERTLGVPLF 692

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIF 750
            QEQ MQIA   +G+  +EAD LRRAM    +   +   ++RFI G          A   F
Sbjct: 693  QEQAMQIAITAAGFKPAEADKLRRAMATFKRTGTIGNFEKRFIEGMVSKDYDPEFAKQCF 752

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
              +  F +YGF +SHAA++A++ Y ++W+K +YP  F  A +  +        +  +DAR
Sbjct: 753  NQIKGFGEYGFPESHAASFALLVYASSWLKAYYPDVFCTAMLNSQPMGFYAPAQLVRDAR 812

Query: 811  QFNIQIMPPSVNTPCVDFKVGD----------------------NRIYYSLAAIKGVGTT 848
            +  + I+P  +N    D  + +                      + +      IKG+ T 
Sbjct: 813  EHGVAILPVDINDSNWDCGLEEAAFDRNAIDFRHHEMREIIKTRHAVRLGFRQIKGLSTD 872

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
                ++    +  + S+ D   R     L + V+E L  A A      SR   L ++  +
Sbjct: 873  DMERLVSHRGEG-YSSVRDLWLR---SGLQKSVIERLADADAFRSLKLSRRDALWAVRAL 928

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                   +     +   +F   +          K        +   + R L      HP+
Sbjct: 929  -------DVRSATEELPLFEQVRHVDLQAEPAAKLPEMLPGEQVIEDYRYLSLSLKAHPV 981

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
               +  LRK GI    + +    G  + +A +V+ +Q+  + KG  + ++T  +      
Sbjct: 982  SFLREELRKAGITRNVDLLKVANGKRVTIAGLVLVRQRPGSAKG--VIFMTLEDETGVAN 1039

Query: 1029 ANFF 1032
            A  +
Sbjct: 1040 AIVW 1043


>gi|163738163|ref|ZP_02145579.1| DNA polymerase III, alpha subunit [Phaeobacter gallaeciensis BS107]
 gi|161388779|gb|EDQ13132.1| DNA polymerase III, alpha subunit [Phaeobacter gallaeciensis BS107]
          Length = 1127

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 253/1061 (23%), Positives = 438/1061 (41%), Gaps = 84/1061 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P +  L V ++++ L GA     ++ + A     A+AITD N+L   +          
Sbjct: 24   DAPDYAELCVTTNFTFLTGASHPEELIVRAAELGLSALAITDHNSLAGVVRAWSALKELK 83

Query: 67   ------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP---------SIVL---------L 102
                  ++  I  Q  +D     ++ +    P PT P          ++L         L
Sbjct: 84   RDPQDALK--IRSQHQVDSSSRQEIGHTSALPKPTTPIFPKLIVGCRLILQNCAVDWIAL 141

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
                  Y+RL  L++      + K    +    + +   +G+I++          A    
Sbjct: 142  PCDRSAYKRLARLLTLGKRRAE-KGQCLLYAEDMID-ACKGMILI----------ALPKE 189

Query: 163  SSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLS 221
            +   A   +    + F + +++    R+ G D+   +   +LA T   P+VA  + L   
Sbjct: 190  TLSNAVSDIQKIGRQFPNHVFLGATPRYDGSDQAYLAACAKLAQTTCAPMVAVGDVLMHR 249

Query: 222  EEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
                +  DVL  +  +  +     R     +  LK  ++M  IF D P AL  T EIA R
Sbjct: 250  ANRRQLADVLTCMRENINIDDIGTRALPNAERRLKAGADMARIFRDHPAALRRTAEIANR 309

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
            C+F L   +           +   +  ++ L   A  GL+ R   G            + 
Sbjct: 310  CNFDLSELSYEY-----PHEEAEGETPQDRLERLAREGLKRRYPDG------PPDRAIKL 358

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            ++ EL+ +  ++F  YFL V D +Q+A+   I    GRGS A S+  Y L ITD+ P   
Sbjct: 359  MEKELSAVKDLEFPAYFLTVHDIVQFARSKGIL-CQGRGSAANSILCYLLGITDVSPDMI 417

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
            +++FERF++  R   PD D+DF  +RR+EVI+++  KYG  R     T    + +AA+R+
Sbjct: 418  AMVFERFVSKHRGEPPDIDVDFEHERREEVIQWIYQKYGRHRAGLCATVIHFRTRAAIRE 477

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            VG+ + +     D    L             +               +  +  I + + G
Sbjct: 478  VGKVMGLS---QDVTAGLSGQIWGMSNGSVDLERIRELGLNLEDRRLMQTIRLIGE-IIG 533

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
              RH S H  G VI    L +L P+      +  V  ++   I+   ++K D L L  LT
Sbjct: 534  FPRHLSQHVGGFVITSGRLDELAPIENAAMENRTVICWDKDDIDALRILKVDILALGMLT 593

Query: 581  LLQKSLDFLAQRGVKVD-LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
             ++K+   + Q       ++ IP  D  TY +L     +G+FQ+ES      L  M+P  
Sbjct: 594  CIRKAFALMQQHENITHSIATIPQKDEATYDMLCAADAVGVFQVESRAQMNFLPRMRPRE 653

Query: 640  IEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
              D++  V++ RPGPI   +   Y  R+NG EK     P ++ + + T+GV ++QEQ +Q
Sbjct: 654  FYDLVIEVAIVRPGPIQGDMVRPYIRRRNGLEKPDPFGPQLEQVTRRTKGVPLFQEQALQ 713

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            IA + +G+S  EAD LRR++    +   + K +++FI+G  KN  S+ IA   F  +  F
Sbjct: 714  IAVVGAGFSAEEADHLRRSLASFRRMGTISKYRDKFIAGMLKNKYSREIAERCFGQIEGF 773

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            ADYGF +SHAAA+A+++Y +AW+K H+P  F  A +  +        +  +D R   I++
Sbjct: 774  ADYGFPESHAAAFAMLAYVSAWLKCHHPAIFACALLNSQPMGFYAPAQIVRDVRDHGIEV 833

Query: 817  MPPSVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
             P  VN    D  +         +      IKG        I+ A  +  +   E    R
Sbjct: 834  RPICVNQSQWDNSLERRPDGTLALRLGFRQIKGFKEDDTGWIIAARGNG-YIDPEHLWLR 892

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
                 L    LE L  A A    G SR   L  + +I   A             +F  + 
Sbjct: 893  A---GLAPAALERLAEADAFSSMGISRRDALWQVKSITTPA----------PLPLFNDQL 939

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
               +           +       +   +      HP+++ +P L  +      + +    
Sbjct: 940  DGEAINEPNVMLPRMHLGEEVVEDYVSMRLSLRAHPMELLRPTLPGL---TCNDQLIKAP 996

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               + +  +V+++Q+  T  G  + ++T  +         +
Sbjct: 997  LQRVSVGGLVITRQRPGTASG--VIFLTLEDETGVCNVVVW 1035


>gi|126738654|ref|ZP_01754359.1| DNA polymerase III, alpha subunit, putative [Roseobacter sp.
            SK209-2-6]
 gi|126720453|gb|EBA17159.1| DNA polymerase III, alpha subunit, putative [Roseobacter sp.
            SK209-2-6]
          Length = 1152

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 260/1079 (24%), Positives = 442/1079 (40%), Gaps = 101/1079 (9%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC---- 63
             P +  L V S+++ L GA     ++ +       AIAITD N+L  ++           
Sbjct: 31   PPGYAELAVTSNFTFLTGASHPEELVARAVELGLAAIAITDRNSLAGSVRAFAALKTLRQ 90

Query: 64   ------------------AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT---------V 96
                               A ++  I  Q   D     +   +                 
Sbjct: 91   QREEAAEEQAKEAQAETETAALR--IRSQYRTDSSSRQESGPKEALETSKLAPLPQLITG 148

Query: 97   PSIVL---------LVSTAEGYQRLIELVSRMYLLDQGKQSVRICL-SWLQEIGTEGLIM 146
              +VL         L      Y RL  L+S   L  + K    + L   L       LI 
Sbjct: 149  CRLVLRDSPVHWLALPQDRAAYHRLSRLLSLGKLRAE-KGQCHLDLQDMLAGCSGMTLIA 207

Query: 147  LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAY 205
            L      P+  A          + L    + +  ++++    R+ G D+   +Q    A 
Sbjct: 208  L---PQVPLQEA-------QVLQHLQAVVRQYPGQVFLGAAPRYDGSDQAYFAQCHHFAR 257

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIF 264
                P+VA  + L       +  DVL  +    T+ +   R     +  LK  ++M  +F
Sbjct: 258  RAAAPMVAVGDVLMHRGSRRQLGDVLTCMREKLTIDAIGTRALPNGERRLKAPADMARLF 317

Query: 265  SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
               P AL  ++EIA RCSF L   +              ++  +  L   A  GL  R  
Sbjct: 318  RSYPAALRRSLEIAARCSFCLSQLSYEY-----PSEISAEEPPQVRLERLAWEGLARRCP 372

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
             G          YR   + EL ++A + F+ YFL V D + +A+   I    GRGS A S
Sbjct: 373  DG------IPARYRAMAEKELRLVADLGFAAYFLTVRDIVDYARSQEIL-CQGRGSAANS 425

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            +  YAL ITD+ P + S++FERF++  R   PD D+DF  +RR+EVI+++  KYG  R  
Sbjct: 426  ILCYALFITDVSPEQISMVFERFVSKHRGEPPDIDVDFEHERREEVIQHIYEKYGRHRAG 485

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
               T    +++AA+R+VG+ + +       L   I          + + +        L 
Sbjct: 486  LCSTVIHFRSRAAIREVGKVMGLSEDVTASLSGQIWGQSNRGADPERMKE----LGLDLE 541

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            D  + + + +  ++ G  RH S H  G VI    L +L P+      D  + +++   I+
Sbjct: 542  DRRLAQTIRLIGEIIGFPRHLSQHVGGFVITRGRLDELCPIENAAMEDRTIIEWDKDDID 601

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRG--VKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
              G++K D L L  LT ++KS D L Q     +  ++ +P DDH TY +L     +G+FQ
Sbjct: 602  TLGILKVDVLSLGMLTCIRKSFDLLEQHEGGERWSIATVPQDDHPTYDMLCLADAVGVFQ 661

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDP 680
            +ES      L  M+P    D++  V++ RPGPI   +   Y  R+ G+EK+      ++ 
Sbjct: 662  VESRAQMNFLPRMRPRRFYDLVIEVAIVRPGPIQGGMVQPYIKRRQGREKVEYPSKELEE 721

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKN 739
            ++ +T GV ++QEQ MQIA + +G++   AD LRR++    +   +   ++RFI+G  + 
Sbjct: 722  VMGKTLGVPLFQEQAMQIAVVAAGFTPEAADQLRRSLATFRRMGTISSFRDRFINGMLER 781

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
                  A   F  +  FADYGF +SHAAA+A+++Y +AW+K H+P  F  A +  +    
Sbjct: 782  NYDAEFAARCFAQIEGFADYGFPESHAAAFAMLTYISAWLKCHHPAVFACALLNSQPMGF 841

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIM 854
                +  +DAR   I++ P  VN+   D  +         +      IKG  +  A  I+
Sbjct: 842  YAPAQIVRDARDHGIEVRPVCVNSSTWDNSLERRADGALALRLGFRQIKGFRSEDAEWII 901

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
             A  +  +   +    R   +      LE L  A A+   G  R Q L  +  I+     
Sbjct: 902  AARGNG-YRDPDALWLRAGLRP---DALERLAEADAMADMGLGRRQALWQVKAIRGQV-- 955

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
                       +F+        +         N       +   L      HP+++ +P+
Sbjct: 956  --------PLPLFSDPLEGEGLREPDVVLPPMNLGEEVVEDYVALRLTLKAHPMELLRPL 1007

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  +    +++      G    +  +V+++Q+  T  G  + ++T  +         +P
Sbjct: 1008 IPDL--TPHDQLARVPLGQTA-VCGLVITRQRPGTASG--VVFLTLEDETGVSNVVVWP 1061


>gi|329939186|ref|ZP_08288560.1| DNA polymerase III subunit alpha [Streptomyces griseoaurantiacus
            M045]
 gi|329302071|gb|EGG45964.1| DNA polymerase III subunit alpha [Streptomyces griseoaurantiacus
            M045]
          Length = 1231

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 266/1056 (25%), Positives = 440/1056 (41%), Gaps = 58/1056 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL   S +SL  GA     + ++       A+A+TD + L  A+ F++    AG++P
Sbjct: 3    AFPHLHTASGFSLRYGASHPERLAERAGERGMDALALTDRDTLAGAVRFTRACVKAGVRP 62

Query: 70   IIGCQLDIDM--------QDNLKMTNQGKTPFPTVPSIVLLVST-AEGYQRLIELVSRMY 120
            + G  L +          +        G     + P +  L    A G+  L  +VS  +
Sbjct: 63   LYGVDLAVAPYSPARPGRERRRTPVRGGAFVDESAPRVTFLARDGATGWADLCRIVSAAH 122

Query: 121  L-LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
                 G     +          EGL +L G     + RA        A + L  +++ +G
Sbjct: 123  AGRTPGDGPPLLPWE---ASHGEGLTVLLG-PDSDVGRALAAGRPDRAARLLAPWRERYG 178

Query: 180  DRLYVNLQRHR----GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
              L +    H     G    R  ++ V  A    +  V +N + +         DVL A 
Sbjct: 179  AALRLEAVWHGRTGTGPGSLRLAARTVGFAAEQGVRPVLSNAARYADPGLGPVADVLDAA 238

Query: 235  AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                 +                 +   +    +  A                  A  +  
Sbjct: 239  RRLVPIDPAKELDSGEAWLKDTGAMTEAAERIVEAAGFPRGAAHHLLEQTRATAAECVVD 298

Query: 295  FIEKECDDIQKEEENEL----RNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLDFELNVIA 349
              +          E  L    R  A   L  R A G +  G+   + Y +R+  EL++IA
Sbjct: 299  PEDDLGIGTVHFPEPHLVGAARRTAQRTLASRAAAGMVRLGHAGRRAYWERMHQELDIIA 358

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
               F+ YFL VA  +   +   I V   RGSGAGS+  + L I   DP+   LL ERFL+
Sbjct: 359  HHDFASYFLTVAQVVDDVRGMGIRVA-ARGSGAGSLVNHLLGIAHADPVEHGLLMERFLS 417

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
              R  +PD DID    RR EV R + +++G ERVA +    + + + A+RDVG AL M  
Sbjct: 418  KRRPVLPDIDIDVESARRIEVYRAIIDRFGAERVATVAMPETYRVRHAVRDVGAALSMDP 477

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
            +++DR+ K  P+  A  V   A+ +    R          RL E+ + L+ L R  + H 
Sbjct: 478  AEIDRIAKSFPHIRARDV-RAALDELPELRALAGERERYGRLWELVEALDALPRGIAMHP 536

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
             G+++ D  L    P+       LP++QF+   +E+ GL+K D LG++  + +  ++  +
Sbjct: 537  CGVLLSDASLRDRTPVVPTSGEGLPMSQFDKDDVEELGLLKLDVLGVRMQSAMAHAVAEV 596

Query: 590  AQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             +    ++DL  +P  D  TY L+ +  TLG FQ+ES G R  +  +QP    D++  +S
Sbjct: 597  ERTSGERIDLDAVPPGDPATYGLIRSAETLGCFQIESPGQRDLVGRLQPATFHDLVVDIS 656

Query: 649  LYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            L+RPGP+   +   +   ++G+  +   HP ++  LKET GV+++ EQ++ I   L+G  
Sbjct: 657  LFRPGPVAADMVRPFIEARHGRAPVRYPHPDLEGPLKETYGVVVFHEQIIHIVHTLTGCG 716

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L EAD +RR +     E   + +  F   A+  G         +E++  F  YGF K+HA
Sbjct: 717  LDEADRVRRGLSD--PEAQGRIRVWFAQQAAARGYGAETIARTWEIVEAFGSYGFCKAHA 774

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
             A+AV +YQ+AW+K H+P  F A  +T +     K +    DAR+  + ++P  VN   V
Sbjct: 775  VAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARRRGVPVLPLDVNRSGV 833

Query: 827  DFKVG----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
              ++              +  +L+ + G+    A  I    A +P+ SL DF  R     
Sbjct: 834  AHRIELVSEGEGRAGAWGLRLALSDVHGISEAEAARIA---AGQPYASLLDFWERARP-- 888

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             +R V   L   GALD FG +R  L   L  + + A+            +    +   + 
Sbjct: 889  -SRPVAGRLAQVGALDAFGANRRDLQLHLTELHRGARGG----GGGQLPLAGGRRTASAG 943

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
                      +   R   E  VL    S H +D ++  L ++ +           G  + 
Sbjct: 944  ------LPDLSEEERLSAELGVLSMDASRHLMDDHRAFLDELRVLSARRLREARHGETVL 997

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +A    + Q    R G R+ + T  +     +  FF
Sbjct: 998  VAGAKAATQTPPIRSGRRVIFTTLDDGTGLVDLAFF 1033


>gi|42521998|ref|NP_967378.1| DNA polymerase III, alpha chain [Bdellovibrio bacteriovorus HD100]
 gi|71151813|sp|Q6MQS6|DNAE2_BDEBA RecName: Full=Error-prone DNA polymerase
 gi|39574529|emb|CAE78371.1| DNA polymerase III, alpha chain [Bdellovibrio bacteriovorus HD100]
          Length = 1061

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 263/1065 (24%), Positives = 469/1065 (44%), Gaps = 100/1065 (9%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-- 63
             ++  FV L   S++S L+GA S   ++ +        +A+ D N L+  +   Q     
Sbjct: 20   PRAKGFVELLGRSNFSFLQGASSPEEMVSQAVEFGYDGMALCDLNGLYGVVRGFQTIQSP 79

Query: 64   ---------AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
                           +IG +L +  +                 S+VL+    +GY  L E
Sbjct: 80   SLFTASPQVKENFHYLIGSELTLTDES----------------SVVLIPMNKQGYSHLCE 123

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            +++        K   ++ L  +++   +GL+ L                     +R    
Sbjct: 124  ILTLGK-RQAAKGFSKLSLEQIEKY-NQGLLCLALPPWTD--------------ERYEKL 167

Query: 175  KKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +K+F +RLY+ L R   ++ +    Q   L   ++  L  T      S E     DVL  
Sbjct: 168  EKIFDNRLYLPLWRDLTWESQEFCRQGFALEEKYKAQLFVTQRPFMHSPERKPLFDVLTC 227

Query: 234  VAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
              H T +++         +  LK+  ++  ++ D  + +E TVEI+ R +F L       
Sbjct: 228  TLHHTTLAEAKNKLIQNSERCLKSLEDISWLWQDRLDLVEKTVEISARVTFSLNEIRYRY 287

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P                 +R+  + G E R  +G            ++++ EL +I  ++
Sbjct: 288  PASSLPSGM----TPTEYMRHLTLKGAESRYPEG------IPDKALKQIEHELELIKDLQ 337

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            +  YFL + +   +A +  I    GRGS A SV  + L +T IDP++  LLFERFL+ +R
Sbjct: 338  YEDYFLTLKEICDFASERKILY-QGRGSAANSVVCFCLGLTAIDPVKMDLLFERFLSRER 396

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
               PD DIDF   RR+EVI+++  KY     A + T    +++ A+R+  +   MP +++
Sbjct: 397  REPPDIDIDFEHSRREEVIQHIYEKYNERHAAMVCTVIRYRSRMAIRETAKVFGMPLAKI 456

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            + + K +  D    +   A+A D       +        + ++Q+L G  RH   H  G 
Sbjct: 457  NAMIKFMGRDGMKRLLDPAVAAD-----FGMEPGPWKMFMALAQQLHGFPRHLGIHTGGF 511

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
            +I   P++++VP+ +   +   V Q+N   ++   L+K D L L  LT L+K  D L   
Sbjct: 512  LITQDPITEMVPVEKATMNGRYVIQWNKDDVDFLRLMKIDVLSLGMLTCLRKCFDLLRDV 571

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            +G    L+ +P DD  TY ++    T+G+FQ+ES      L  MQP    D++  ++L R
Sbjct: 572  KGRDYSLATLPADDKPTYDMICRAETVGVFQIESRAQMNTLPRMQPRNFYDLVIEIALIR 631

Query: 652  PGPIDNIVVYNN---RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            PGP+   +V+     R+N  ++I   HP ++P+LK+T G+ I+QEQVM++   ++ ++  
Sbjct: 632  PGPLQGGMVHPFLKLRQNPPKEIKYAHPALEPILKKTMGIPIFQEQVMKMVVAVADFTPG 691

Query: 709  EADVLRRAMGKKIKEE--MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            EAD LRR M    K +  M   ++R  +G +++GIS   A  IF+ +  FA+YGF +SH+
Sbjct: 692  EADELRRVMSSAWKRKATMGGIEQRLRTGFARHGISSEYADQIFKTIEGFANYGFPESHS 751

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A++A+++Y + ++K HYP  F    +  +       +    +A++  + + P  V     
Sbjct: 752  ASFALLTYASCYLKCHYPDVFACGLLNSQPMGFYAPRTIIAEAQRNGVVVAPLDVQKSDY 811

Query: 827  DFKVGDNR----IYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRV 881
            D+ +        +   L +I G+     R I ++   +  +  L DF  R    +L R V
Sbjct: 812  DYTIEKTAAGDLLRVGLRSIYGIPEVLIRRIEDSRKEEGLYIDLADFIRRT---QLPRSV 868

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF---SDKI 938
            L  L  AGA + F  +  +L+ +L+++            ++   ++ H K  F    D  
Sbjct: 869  LLKLAAAGAFESFNSNVRELIWNLESL----------SLDQQSFLWGHPKEQFELGEDDD 918

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK-------PILRKMGIKGY---EESVA 988
              E    E++  R   E    G+    HP+ V +         LR+     Y   E+   
Sbjct: 919  EPEHLPFESNWDRLRREYDSKGYSVESHPMSVLRTYLHSKSEALREKRFVPYFSSEDLKR 978

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  +R+A +V   Q+  T KG  + ++T  +          P
Sbjct: 979  MKTKTKVRVAGLVAITQRPPTAKG--MCFITLEDEFGFVNIVIHP 1021


>gi|217970361|ref|YP_002355595.1| DNA polymerase III subunit alpha [Thauera sp. MZ1T]
 gi|217507688|gb|ACK54699.1| DNA polymerase III, alpha subunit [Thauera sp. MZ1T]
          Length = 1075

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 275/1071 (25%), Positives = 446/1071 (41%), Gaps = 98/1071 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC---AA 65
            P++  L   S++S   GA     ++ + AA    AIA+TD  +    +   +       A
Sbjct: 3    PAYAELHCLSNFSFQRGASHPEELVAQAAAFGYSAIALTDECSFAGVVRAHRALQALPEA 62

Query: 66   GIQP--IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            G +P  I+GC+L +                   P +VLL +   GY RL  L+++     
Sbjct: 63   G-RPRLIVGCELRLADG----------------PCLVLLAADRAGYGRLSRLLTQAR-RS 104

Query: 124  QGKQSVRICLSWL-----QEIGTEGLIMLTGGSS-----GPIDRAFFFNSSQVAEK-RLL 172
              K    +  + L      E   E    L G  +                + VA +    
Sbjct: 105  ADKGRYHLTRAMLDATRADEAAAE---ALPGCLALLIPPEEFPPPGAAGDAAVALRSEAR 161

Query: 173  TFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
               K F  R ++    R  G D  R   ++++A    +P VA   +L          DV+
Sbjct: 162  WLAKRFPGRSWIAHTPRLDGRDPARLHWILRIAQATGVPAVAAGGALMHEAARRPLADVM 221

Query: 232  MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
             A+     V++             +    ++     PE L  TV +A RC F L      
Sbjct: 222  SALRLHCSVAEAGLALAPNAELRLHERATLA-RRHPPELLAETVAVAARCRFDLDELRYE 280

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD--------------- 336
             P  +        +     LR     GL  R  +    +   A                 
Sbjct: 281  YPAELVP----ADETPTRWLRRLVEGGLAWRYGKAGKERRAAAPATIAAAPPPAEDPAPP 336

Query: 337  -YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
              R +++ EL +IA + +  YFL V D +++A++  I    GRGS A SV  +AL IT++
Sbjct: 337  TVRAQIEHELALIAELGYEPYFLTVHDIVRFARERGIL-CQGRGSAANSVVCWALGITEV 395

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DP    +L ERF++ +R   PD D+DF  +RR+EVI+Y+  KYG ER A   T    +A+
Sbjct: 396  DPQLGIMLVERFISRERDEPPDIDVDFEHERREEVIQYLYRKYGRERAALAATVIRYRAR 455

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
            +ALRDVGRAL +  +Q++RL +         +  + +A+         A P   RL+ ++
Sbjct: 456  SALRDVGRALGLDETQIERLTREHHWFDGRHILPERLAE----AGLDPASPVTQRLVALT 511

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            ++L G  RH S H  G VI    L +LVP+     SD  V Q++   ++  GL+K D L 
Sbjct: 512  EELIGFPRHLSQHVGGFVIARGRLDELVPVENAAMSDRTVIQWDKDDLDAVGLMKIDVLA 571

Query: 576  LKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L  L+ L++ L    A RG  + L+ IP +  E Y +L+   ++G+FQ+ES      L  
Sbjct: 572  LGMLSALRRGLALVSAWRGEALTLATIPRERKEVYEMLSRADSVGVFQVESRAQMTMLPR 631

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP------LIDPMLKETQGV 688
            ++P    D++  V++ RPGPI   +V+   +  +       P       I  +L  T GV
Sbjct: 632  LRPQRFYDLVVEVAIVRPGPIQGGMVHPYLQARERAARGEDPLDGLREEIRGVLARTLGV 691

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAV 747
             I+QEQVMQ+A + + ++  EAD LRRAMG    K E+++ +++ + G + NG     A 
Sbjct: 692  PIFQEQVMQLAVVAADFTGGEADQLRRAMGAWRRKGELERYRQKLLDGLANNGYDPDFAQ 751

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             + + +  F  YGF +SHAA++A++ Y +AW+K   P  FLAA +  +        +  Q
Sbjct: 752  RLCQQIEGFGSYGFPESHAASFALLVYASAWLKCFAPAAFLAALLNSQPMGFYAPAQLIQ 811

Query: 808  DARQFNIQIMPPSVNTPCVDFKVG-----DNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
            DAR+  +++    V     D  +         +   L  I+G+G   A  I  A  +  F
Sbjct: 812  DARRHGVEVRAADVGASAWDCMLETADGAQPAVRLGLRMIRGLGREAATRIAAARGEHAF 871

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
                D  +R    +L+   L +L   GAL      R Q L                  + 
Sbjct: 872  ADTRDLAARA---RLDTGELRTLAAGGALASLAGHRRQALWQ---------------ASG 913

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
               +           +          +     +   LGF    HPL   +  L ++    
Sbjct: 914  AAPLPGLLAEAPGGDVAA-TLDAPAEAEDLLADYARLGFTLGRHPLAFVREQLARLRFLT 972

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +  A       R A +V  +Q+  T KG+   ++T  +          P
Sbjct: 973  AADITAAPDRMLARGAGLVTCRQRPGTAKGTL--FLTLEDETGLTNVIVRP 1021


>gi|260584014|ref|ZP_05851762.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
            700633]
 gi|260158640|gb|EEW93708.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
            700633]
          Length = 1112

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 309/1032 (29%), Positives = 516/1032 (50%), Gaps = 57/1032 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  LQV S YSLL   + L   +          +A+TD   L  A+EF        I+P
Sbjct: 2    TFTILQVTSGYSLLRSTIDLYRYVMTAKELGYQKLALTDEGVLHGAIEFYNLCRNQNIEP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS---RMYLLDQGK 126
            IIGC              +         S+++      GYQ LIEL +   +  L+ +  
Sbjct: 62   IIGCLF----------QYKQWRNAEAFSSMIVYAKDEIGYQSLIELSTQYQKSKLVSK-- 109

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK--LFGDRLYV 184
                  +  + +  +E L ++    +     A   ++ +VA +R L   +   F   +++
Sbjct: 110  -----DMEKIIKEASEHLQIVFPQENSE--WALECSNGEVAFQRWLFEAEERYFP-NIHL 161

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             ++ ++        ++        + L+    + +L  ED  ++ VL A+     +S   
Sbjct: 162  GIESNQILP-IPLEELEAWGQDFSMKLLPFVKTFYLKAEDDFSYRVLKAIGDGETLST-T 219

Query: 245  RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +  V+  +YL++   +    S +   + +    E      + L  H  +LP+F   E   
Sbjct: 220  QAEVSGQYYLQDEKTLTQQSSTILEGKLVRQLEEFVDSLKWKLSKHKLLLPKFQTPEG-- 277

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              K  +  L        +    Q    K     +Y  RL++EL++I +M F  YFLIV D
Sbjct: 278  --KMSQEYL--------QEICQQSLKDKELVKDEYESRLNYELSIIHQMGFDDYFLIVWD 327

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             +++A +  I  GPGRGS AGS+ +Y L IT +DP+ + LLFERFLNP+R +MPD D+DF
Sbjct: 328  IMKYAHEAGIQTGPGRGSAAGSLVSYLLNITKVDPIEYQLLFERFLNPERYTMPDIDLDF 387

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +RR++++ YV+ KYG   VAQI TFG+  +K ALRDV R L +   Q     K IPN 
Sbjct: 388  PDNRREDILDYVRRKYGENHVAQIATFGTFGSKQALRDVCRVLGLTTVQAGEWSKAIPNQ 447

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +           +      P    + E + ++EGL RH STHAAG+V+ D+PL+ +
Sbjct: 448  LGINLKTA-YEQSKNLQTLVSRSPKNQLIFETACRIEGLPRHLSTHAAGVVLYDKPLTDV 506

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLI 601
            +P+    +  +P+TQ+ MK++E+ GL+K DFLGL  L++L  S++        ++ L+ I
Sbjct: 507  IPLIYKDQ-QMPITQYTMKYVEQIGLLKMDFLGLTNLSILHDSIELTKSIYQHEIILNEI 565

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P DD +T  L     T GIFQ ES G+R+ L+ ++P  +EDI A+ +LYRPGP++ I  +
Sbjct: 566  PLDDEKTLELFQMADTNGIFQFESDGIRRVLKKLRPTNLEDIAAVNALYRPGPMEQIDTF 625

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK+G+E +   HP+++ +L+ T GV++YQEQVMQ+   ++G++L +AD+LRRA+GKK 
Sbjct: 626  IKRKHGQEVVKYPHPILESILQSTYGVMVYQEQVMQVTSQMAGFTLGQADILRRAIGKKD 685

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             + ++ +K  FI GA   GI    A  +++ + +FA+YGFN+SHA AY++++YQ A+ K 
Sbjct: 686  AKVIETEKAHFIEGAIGKGIDVASATEVYQYIERFANYGFNRSHAFAYSLLAYQLAYFKA 745

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP  F  A +    D   K++ +  +A+Q  I I  PS+NT   D+    + I+  L A
Sbjct: 746  HYPRAFYTAILRFVGDRSPKLQTYFIEAKQRGISIKNPSINTSVDDYTATIDGIFIGLNA 805

Query: 842  IKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IKG+     + I+     + PF    DF  R+  +   + VLE+L+ AGA D  G +R  
Sbjct: 806  IKGLRRDFIQEILTQRKQNGPFIDFMDFAFRIGKRYCKKEVLEALIDAGAFDELGKNRAT 865

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L  ++D + +  ++   N            +          +    N   + E E  VLG
Sbjct: 866  LRATIDAVIESVKFHGSNIA---------LELNEEMYPKYFEEEDSNIIEKIEREIAVLG 916

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            F  S  P + Y+ + ++           +     + +  ++ + ++ +T+KG  + + T 
Sbjct: 917  FPVSAFPTEPYEILYKEQKANRISTIYES---KLVSVLGILKNIRKTRTKKGEPMAFGTI 973

Query: 1021 SEPAKEYEANFF 1032
             +   E +   F
Sbjct: 974  QDETGEIDFVVF 985


>gi|327191253|gb|EGE58296.1| DNA polymerase III protein, alpha subunit [Rhizobium etli CNPAF512]
          Length = 1152

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 248/1080 (22%), Positives = 446/1080 (41%), Gaps = 89/1080 (8%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            ++   +F  +   +++S LEGA S   ++ + A  +   + I D N++   +     A A
Sbjct: 1    MKGERAFFEIGARTNFSFLEGASSPEEMVLQAAHLRLGGLGIADRNSVAGVVRAH--AQA 58

Query: 65   AGI-------QPIIGCQLDIDMQDNLKMTNQGKTPF------PTVPSIVLLVSTAEGYQR 111
              I         I+  + +   +           P          P I+       G+  
Sbjct: 59   EQIEERYKNRDAIL-AEAEKTGKKERIFHPIRIQPGARLVFSDDTPDILAYPCNRRGWAN 117

Query: 112  LIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGS---SGPIDRAFFFNSSQVA 167
            L  L+S   L ++  K S  +  + L E G E ++ L            +    +  +  
Sbjct: 118  LCRLLSAGNLKEEAVKGSCILTEAELMEWGDEMMLALVADRTLVESQAGQTALEDYLEQF 177

Query: 168  EKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
             +R      +      V    + G DR   + +  LA  + +PL+ATN  L+   E    
Sbjct: 178  RRRFRKAFFM------VLAPAYDGRDRQVFAVLAMLAARNRVPLIATNQPLYHHPERRPL 231

Query: 228  HDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
             DV++A+     +           + YLK+  EMV IF D P+A+ENT     + SF L+
Sbjct: 232  SDVVIAIREHVQISQAGFLLAPNAERYLKDSREMVRIFGDYPDAVENTQVFFGKLSFSLK 291

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
                          +D  +  +  L     AG   R  QG            +++D+EL 
Sbjct: 292  ELQHNY-----PSENDPGETPQETLERLTRAGAAKRYPQGV------PSKVAKQIDYELK 340

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            +I    ++ YFL V   IQ A+ +   +  GRGS A SV  Y L IT++DP + +LLF+R
Sbjct: 341  LIGDKNYASYFLTVHRIIQHARYDLKVLCQGRGSAANSVICYCLEITEVDPQKSTLLFDR 400

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            F++ DR   PD D+DF  DRR+EVI+++  +YG +         + + ++A R+V +A  
Sbjct: 401  FISMDRDEPPDIDVDFEHDRREEVIQFIYRRYGIDHAGLTAGVTTYRTRSAGREVAKAFG 460

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
            +       +  L+       +S      D++     + DP    +L+ + +L G  RH +
Sbjct: 461  LSEDVQSAISSLVWGWSEDNLS----DRDAKAAGLDVKDPVTQNVLQYASELLGFPRHLT 516

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             H  G VI    L ++VP+ +    D  + +++   ++   ++K D L L  LT L+K+ 
Sbjct: 517  QHVGGFVITRDRLDEVVPIMKTAMPDRYMIEWDKDDLDNVKILKVDVLALGMLTCLRKAF 576

Query: 587  DFLAQRGVKVDL------SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
              L                    +    Y ++    TLG+FQ+ES      L  ++P   
Sbjct: 577  SLLELHYDVKKTLADLGNREHGDEGKPVYEMMGRADTLGVFQIESRAQMSMLPRLKPKIF 636

Query: 641  EDIIALVSLYRPGPIDNIVVYN-----NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
             D++  V++ RPGPI   +V+       ++     +      ++ +L+ T GV ++QEQ 
Sbjct: 637  YDLVIEVAIVRPGPIQGDMVHPYLKRREQRARNIPVEYPSKELEAVLERTLGVPLFQEQA 696

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLA 754
            MQIA   +G+  +EAD LRRAM    +   +   ++RFI G          A   F  + 
Sbjct: 697  MQIAITAAGFRPAEADKLRRAMATFKRTGTIGDFEKRFIEGMVSKNYDPEFAKQCFNQIK 756

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F +YGF +SHAA++A++ Y ++W+K +YP  F AA +  +        +  +DAR+  +
Sbjct: 757  GFGEYGFPESHAASFALLVYASSWLKAYYPDVFCAAMLNSQPMGFYAPAQLVRDAREHGV 816

Query: 815  QIMPPSVNTPCVDFKVGD----------------------NRIYYSLAAIKGVGTTTARH 852
            +IM   +N    D  + +                      + +      IKG+ +   + 
Sbjct: 817  RIMAVDINESEWDCTLEEAVFDRKTVDFRHGQMREIIKTRHAVRLGFRQIKGLSSDDMKR 876

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            +++      + S+ D   R     L + V+E L  A A      SR + L ++  +    
Sbjct: 877  LVDNRGQG-YGSVRDLWLR---SGLPKSVIERLADADAFRSIHLSRREALWAVRAL---- 928

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
               +     +   +F   +          K        +   + R L      HP+   +
Sbjct: 929  ---DVKSAAEELPLFEQVRHIDLQPEPAAKLPDMLPGEQVIEDYRYLSLSLKAHPVSFLR 985

Query: 973  PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              LRK GI    + ++   G  + +A +V+ +Q+  + KG  + ++T  +      A  +
Sbjct: 986  EELRKAGITRNVDLLSVPNGKRVTIAGLVLVRQRPGSAKG--VIFMTLEDETGVANAIVW 1043


>gi|323136507|ref|ZP_08071589.1| DNA polymerase III, alpha subunit [Methylocystis sp. ATCC 49242]
 gi|322398581|gb|EFY01101.1| DNA polymerase III, alpha subunit [Methylocystis sp. ATCC 49242]
          Length = 1074

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 263/1078 (24%), Positives = 439/1078 (40%), Gaps = 117/1078 (10%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  +P +  L   +++S L GA     +     A     I I D N+L   +       A
Sbjct: 1    MP-TPRYAELATTTNFSFLRGASHPEEMAATALALGHSGIGIADRNSLAGVVRAFSYLRA 59

Query: 65   A-----GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                    +  +G +L                     P I+        Y RL  L++R 
Sbjct: 60   HRESVGDFRLAVGARLVFRDG---------------TPDILCYPKDRAAYGRLCRLLTRG 104

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
                Q K    + L  L E G EG  ++               +   A        +   
Sbjct: 105  NSRTQ-KGDCALFLDDLIEFG-EGQHVI----------LMENGAPPPA------LMEALH 146

Query: 180  DRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             RL++     +    R R +  V+LA T  LPLVA N++     +     D L  +   T
Sbjct: 147  GRLWLAATALYGPRPRARLAGRVELAQTLRLPLVAVNDAHMHVADRRPLADALTCIREKT 206

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
             + +            +   +     + L       VE + R    L      L      
Sbjct: 207  TLDEAGFLL---SANAERHLKSGEEMARLFRLAPRAVEESARFIDALDFRLTDLAYEYPS 263

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            E  +    E+  L   + AG   R  +GA       QD  + L+ EL ++A +K++ YFL
Sbjct: 264  ELREGYASEQEALEALSRAGAMTRYPKGA------PQDVEKLLERELQLVAELKYAAYFL 317

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
             V D +++A++  I    GRGS A SV  + L IT++DP +  LLFERF++ +R   PD 
Sbjct: 318  TVHDIVRFAREQGIL-AQGRGSAANSVICFCLGITEVDPTKHDLLFERFISAERNEPPDI 376

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D+DF  +RR+EVI+Y+  ++G ER        + + K+A+R++G+A  +    + RL   
Sbjct: 377  DVDFEHERREEVIQYIYTRFGRERAGLAAAVTTYRGKSAIREIGKAFGLSNDLLGRLSSA 436

Query: 479  IPNDPAHPVSLQAIA----DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
                 +     + IA    D S  R A+           ++ ++EG  RH + H+ G VI
Sbjct: 437  AFGRGSDGSRARDIARLGLDASELRFAKAL--------ALAAEIEGFPRHLTQHSGGFVI 488

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
                L ++VP+           +++   ++  GL+K D L L  LT L+K LD LAQ   
Sbjct: 489  TRDRLDEVVPVSPAAMEGRTTIEWDKDDLDALGLLKIDVLALGMLTCLRKGLDLLAQHYG 548

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            +   LS IP +D   Y +++   T+G+FQ+ES      L  ++P+C  D++  V++ RPG
Sbjct: 549  IVHRLSSIPAEDQRVYAMISRADTVGVFQIESRAQMSMLPRLKPNCFYDLVIEVAIVRPG 608

Query: 654  PIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PI   +V+    R++GKE +      ++ +L  T GV ++QEQ M+IA + +G++ SEAD
Sbjct: 609  PIQGDMVHPYLRRRSGKEPVSYPSKELEQVLGRTYGVPLFQEQAMRIAIVAAGFTPSEAD 668

Query: 712  VLRRAMGKKIKEE-MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LRRAM    +   +   +++ I G ++ G ++  A   F  +  F  YGF +SHAA++A
Sbjct: 669  QLRRAMATFKRAGLIGGFRDKMILGMTRKGYAREFAERCFSQIEGFGTYGFPESHAASFA 728

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++ Y +AWMK  YP  F  A +  +        +  +DAR+  I+     +N    D  +
Sbjct: 729  LLVYASAWMKCRYPDVFACALLNSQPMGFYAPAQIVRDAREHGIETREADINASDWDCTL 788

Query: 831  GDN-----------------------------------RIYYSLAAIKGVGTTTARHIME 855
             +                                     I      IKG+     R ++ 
Sbjct: 789  EEKETRTSRPPESRPVGDKRLPLHPHHAEMAGDILGDCAIRLGFRQIKGLAEEDMRRLVA 848

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
                  +DS+ D   R +   L+   L  L  A A    G SR   L +   +       
Sbjct: 849  RRGKG-YDSVRDVWLRAE---LSPATLTRLAEADAFASLGLSRRDALWAAAGL------- 897

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
              NR    +++       F+                   + R L     GHP+   +P L
Sbjct: 898  --NRVGDKDDLPLLRDLAFAPLEPDAHLPPMPPGEEVVEDYRFLSLSLKGHPVAFLRPRL 955

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +  I   E       G  + +A +V+ +Q+  T KG  + ++T  +         +P
Sbjct: 956  ARH-IIPCEALGRESDGRRVTVAGLVLLRQRPGTAKG--VVFMTIEDETGAANIIVWP 1010


>gi|170017064|ref|YP_001727983.1| DNA polymerase III, alpha subunit [Leuconostoc citreum KM20]
 gi|169803921|gb|ACA82539.1| DNA polymerase III, alpha subunit [Leuconostoc citreum KM20]
          Length = 1113

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 316/1029 (30%), Positives = 518/1029 (50%), Gaps = 49/1029 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQ+ S+YSLL+   ++  I+         AIA+TD N ++ A+EF QKA   GI+P+
Sbjct: 2    YAPLQILSAYSLLKNPNTITQIIRTAKDRHYGAIALTDINVMYGAVEFYQKAKDMGIKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L ++          G     T   +VL+     GYQ L+ L S         Q   
Sbjct: 62   FGVTLQVN----------GLVNTSTTFPLVLIAENQTGYQNLMWLSSAKMTA----QDTT 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
            +    L +   +G+ ++       + +       Q  +           D  LY+ +  H
Sbjct: 108  MTFDLLVD-HLQGIHVIL-PHDSELSQLIASE-YQEVDNYWHQLSNKIDDQHLYIGI--H 162

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRV 248
                    +++ Q +  H+  LVA ++  +L+ +D     VL A+  +  +   K   + 
Sbjct: 163  PQLAPQIRARLAQFSQIHQASLVALDDVDYLNADDAFTTQVLKAIDANVKLDGIKALAQQ 222

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK-EE 307
            +  H L +  ++   + D            +  +             +       +    
Sbjct: 223  SGSHVLVDFEQLRQSYQDDEALKLAFKNNEQLVARSHVSLTFKQTTALPPFQLPAETANA 282

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+N A+ GL  ++   +         Y +RL  EL +I ++ F+ YFLIV D + +A
Sbjct: 283  AEYLKNLAMTGLNAKMHITSQQHA----QYLERLHNELAIINKLGFNDYFLIVWDIVNFA 338

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+N+I +G GRGS AGS+ A++L ITDIDP++F LLFERFLN +R+ MPD DID+  +RR
Sbjct: 339  KQNHIQLGVGRGSAAGSLVAFSLGITDIDPVKFGLLFERFLNAERVQMPDIDIDWPDNRR 398

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAH 485
            ++V+ Y+  KYG    AQIITFG+L AK ALRD  R   +  + + R+   +P       
Sbjct: 399  EDVLAYLHQKYGQRNFAQIITFGTLAAKQALRDTARVFGVSQTMMSRISNAVPQGKQGRR 458

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                +A+ D            + D LL+ +QK+EGL R+ STHAAG+V+ D PL   +P+
Sbjct: 459  VTIGEALKDSDALSRVLGDIDNGDLLLKTAQKIEGLPRNYSTHAAGVVLSDSPLVNTLPV 518

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFD 604
                 S   +TQF    +E  GL+K D LGL  LT+L ++L +  Q    + D+  +P D
Sbjct: 519  QSGSES-RLLTQFEKNPVEALGLLKIDILGLSNLTILAQTLYYAKQYLPDRFDIGHVPLD 577

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D  T  L     T G+FQ ESSG++  L+ +QP   E I+A+ +LYRPGP  NI  +  R
Sbjct: 578  DKATLALYAKGDTNGVFQFESSGIKHVLKQLQPATFEHIVAVNALYRPGPSRNIESFIKR 637

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            ++G+E +  + P +  +L  T G+I+YQEQVM +A+  +G++L EADVLR AM KK   +
Sbjct: 638  RHGQETVTVLDPSLKTILAPTFGIIVYQEQVMLVAEKYAGFTLGEADVLRSAMSKKKLAQ 697

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M     +FISGA   G  ++ A  IF  + +FA+YGFN+SHA AY+ +S+Q A+MK HYP
Sbjct: 698  MADMHGKFISGAVSQGHDQSQAEQIFAYIDEFANYGFNRSHAVAYSKLSFQLAYMKVHYP 757

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            + F  A +   + + +KI+ +  +A+   I +  P+VN     + +  + +   L +IKG
Sbjct: 758  IAFFTALLNANLGSPDKIRLYVTEAKARGIVVKAPNVNQSDRFWTINKDFLQMGLHSIKG 817

Query: 845  VGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            V T     +++    + PF+S++    R+  K   R VL  +V+AGALD FGY+R++L+ 
Sbjct: 818  VRTDFVAALIDERKNNGPFESIQSLVRRLPEKFRKRDVLTQMVYAGALDSFGYNRVELVT 877

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
            +LD++ + A              F     +   +  ++K +    + +  +E+  +G   
Sbjct: 878  ALDDLIEAAS-------------FGELILS---ETKIKKMADITLTEKLVHEKETIGVNL 921

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            SGHPLD +  I+++   +   +         +++  M+ S +Q +T+KG  + +VT S+ 
Sbjct: 922  SGHPLDTFASIIKQNDFQQIADVSLAKE--PVKMIVMIDSVRQTRTKKGETMAFVTVSDT 979

Query: 1024 AKEYEANFF 1032
                    F
Sbjct: 980  TGTISLTIF 988


>gi|121594327|ref|YP_986223.1| DNA polymerase III subunit alpha [Acidovorax sp. JS42]
 gi|120606407|gb|ABM42147.1| DNA polymerase III, alpha subunit [Acidovorax sp. JS42]
          Length = 1064

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 266/1062 (25%), Positives = 440/1062 (41%), Gaps = 101/1062 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S++S   GA     ++ +       A+A+TD  ++   +     A A G+ 
Sbjct: 4    PAYAELHALSNFSFQRGASHPQELVQRAHKLGYSALALTDECSVAGVVRAHGAAQALGLP 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +      D                 IV L    +G+  L E ++       GK  
Sbjct: 64   LIVGSEF--CWGDV---------------RIVALARDVQGWGDLCEFITAARQR-AGKGG 105

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA------EKRLLTFKKLFGDRL 182
             R+              +L G     +  A    +   A         L + + LFG   
Sbjct: 106  YRVD-------AQSPWALLQGC---EVLLALRREAFVDASDLVAVSACLESVRGLFGSNC 155

Query: 183  YVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++ ++ H   D       + Q      LPLVA  +    S       DVL AV     V+
Sbjct: 156  WLAVELHTAPDDGLWLRTLTQAGARLGLPLVAAGDVHMHSRAAKPLQDVLTAVRLGRSVA 215

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                               ++     P  L  T+++A RC+F L       P    +   
Sbjct: 216  ACGFALQPHAEKRLRPRSRLAGL-YPPALLAATLQVAARCTFSLNEIKYRYPLETVQPGM 274

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               +     L      G  VR   G        +    +++ EL +IA   +  YFL V 
Sbjct: 275  TASQT----LACLTWEGARVRYPDGV------PEAVAAQVEKELALIAECGYEMYFLTVH 324

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D +++A+   I    GRGS A S   Y L IT +DP +  LLFERF++ +R   PD D+D
Sbjct: 325  DIVRYARSQGIL-CQGRGSAANSAVCYCLGITAVDPQKTRLLFERFISRERSEPPDIDVD 383

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  DRR+ VI+Y+ +KYG ER A      S + ++ALRDVG+AL +  + VD   K    
Sbjct: 384  FEHDRRETVIQYIYDKYGRERSAITAVVISYRTRSALRDVGKALGVAPALVDAFAKEHHW 443

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                  +   +A   R  E   A  +   L +++++L G  RH S H  G V+ +  L++
Sbjct: 444  FDDVLATEHLLALAERLGEPLGAHTAALWL-QLARQLRGFPRHLSQHVGGFVLTEGKLTR 502

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            LVP+         + Q++   ++  GL+K D L L  L+ L++ L+  A  RG   DL+ 
Sbjct: 503  LVPVEPAAMDGRSIIQWDKDDLDAMGLLKVDVLALGMLSALRRCLEMRAALRGESWDLAD 562

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP +D  TY ++    T+G+FQ+ES      L  +QP    D++  V++ RPGPI   +V
Sbjct: 563  IPPEDPATYDMVCRADTVGVFQIESRAQMSMLPRLQPREFYDLVVQVAIVRPGPIQGGMV 622

Query: 661  YNN----------------RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            +                  ++     I    P +   L+ T GV I+QEQVMQIA   +G
Sbjct: 623  HPYLQARERRRQWQRRQRTKREEPFPIEY--PRLGNALRRTLGVPIFQEQVMQIAIDGAG 680

Query: 705  YSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            +S  +AD LRR+M     K E+ + ++ F  G   NG     A  +F+ +  F +YGF +
Sbjct: 681  FSAGQADELRRSMAAWRRKGEVHRFEKPFKDGLLANGYPPEFADRLFQQILGFGEYGFPE 740

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHA ++A+++Y ++W+K H P  FLAA +  +        +  QDAR+  ++++P  V T
Sbjct: 741  SHAYSFALLAYASSWLKRHEPACFLAALLNAQPLGFYTPAQLVQDARRHGVRVLPIDVAT 800

Query: 824  PCVDFKVGD------------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              VD  + +              +   L  + G+G   A  +++A    PF S ED   R
Sbjct: 801  SDVDCTLEEPLAPVAGVSLAQPAVRLGLRLVAGLGAAAAERLVQARGSGPFASTEDLALR 860

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
                +L+R+ L++L  A AL      R Q +       +    ++             + 
Sbjct: 861  A---RLDRQDLQALAAADALRALAGHRRQQMWDAAAQLRAPPLLQ-------------DA 904

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                  + L              +    G     HPL + +  L++  +   ++  +   
Sbjct: 905  PVHEAALQLPAAPE---GEDILWDYAATGLTLRRHPLALLREKLQRWRLATAQQLQSAPH 961

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            G  +R   +V  +Q+  +  G+   +VT  +         +P
Sbjct: 962  GRRVRACGIVTVRQRPGSANGTM--FVTLEDETGSVNVIVWP 1001


>gi|282875876|ref|ZP_06284743.1| putative DNA polymerase III DnaE [Staphylococcus epidermidis SK135]
 gi|281294901|gb|EFA87428.1| putative DNA polymerase III DnaE [Staphylococcus epidermidis SK135]
          Length = 935

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 325/1012 (32%), Positives = 518/1012 (51%), Gaps = 85/1012 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H+S+ LL+ +L ++ ++DK   +   A+AITDTN L+   +F     AA I PI 
Sbjct: 3    AHLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +        T             V+L    +G + L +L S + + ++      +
Sbjct: 63   GMTIYLTDGLYTIET-------------VVLAKNNQGLKSLYQLSSAIMMRNKE----EV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLYVNLQRH 189
             + WL+    E LI++                 + AE         F     LY+    H
Sbjct: 106  PIEWLKRY-DEHLIII----------------FKEAELSHKQVIDAFEGKKELYL---NH 145

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +     +            V   ++ +L+E+D E    L A+  +T +         
Sbjct: 146  NSNNTLTGKR------------VWMQSARYLNEDDAETIPALHAIRDNTKLDLIHEKETL 193

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +H+           S+    + N  EI   C   +  H  +LP+F+    +      ++
Sbjct: 194  DEHFPSIEELQTLNLSEDM--ITNANEIEELCQAEIAYHQSLLPQFVTPNGE----TSKD 247

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L    +  L               + Y  RL  E  +I  M F  YFLIV+D I +AK 
Sbjct: 248  YLWTILIHRLREWELND--------KTYFNRLKHEYKIITDMGFEDYFLIVSDLIHFAKT 299

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            + + VGPGRGS AGS+ +Y L IT IDPL+++LLFERFLNP+R++MPD DIDF   RR++
Sbjct: 300  HEVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDIDIDFEDTRREK 359

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+YVQ+KYG   V+ I+TFG L A+A  RDVGR +    + ++ + KLIP+     +  
Sbjct: 360  VIKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKLIPHKLGITLEE 419

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    F+     +   +R  E+S+KLEGL RH STHAAGI+I D+PL +  P+    
Sbjct: 420  AYQK--PEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQPLFKFAPLTTGD 477

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHET 608
                 +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +   + +D+  IP+DD + 
Sbjct: 478  TG--LLTQWTMAEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINIDIEAIPYDDKKV 535

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + LL+   T GIFQLES G+R  L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++  
Sbjct: 536  FDLLSNGDTTGIFQLESDGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRHNP 595

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             ++  +HP ++P+LK T GVIIYQEQ+M IA  ++G+S  EAD+LRRAM KK +  ++ +
Sbjct: 596  NQVAYLHPDLEPILKNTYGVIIYQEQIMLIASQVAGFSYGEADILRRAMSKKNRAILESE 655

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            ++ FI GA  NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F 
Sbjct: 656  RQHFIDGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFY 715

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
            A  ++  + + +K      +A+   I I+PP++N     +K  +  IY SL  IKG+G  
Sbjct: 716  ANILSNVIGSEKKTAAMIDEAKHQRISILPPNINQSHWYYKASNKGIYLSLGTIKGIGYQ 775

Query: 849  TARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            + + I++    + P+    DF  R+  +  NR++LESL+  GA D FG +R  LLQ++D 
Sbjct: 776  SVKLIIDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGKTRATLLQAIDQ 835

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +      VE++       +F       + K + E+       +  + E+  LGFY S HP
Sbjct: 836  VLDLNSDVEQDEM-----LFDL----LTPKQSYEEKEELPDQLLSDCEKEYLGFYISKHP 886

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            ++       K    G  +         I +       +Q +T+ G  + +VT
Sbjct: 887  VE---KKFEKKQYLGIFQLSNGSHYQPILV--QFDHIKQIRTKNGQNMAFVT 933


>gi|82751290|ref|YP_417031.1| DNA polymerase III alpha subunit [Staphylococcus aureus RF122]
 gi|82656821|emb|CAI81250.1| DNA polymerase III alpha subunit [Staphylococcus aureus RF122]
          Length = 1065

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 310/1022 (30%), Positives = 505/1022 (49%), Gaps = 81/1022 (7%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G 
Sbjct: 5    LNIHTAYDLLNSSLKIEDAVRLAVSENVEALAITDTNVLYGFPKFYDACIANNIKPIFGM 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + +    N   T             V+L     G + L +L S++ +         +  
Sbjct: 65   TIYVTNGLNTIET-------------VVLAKDNNGLKDLYQLSSKIKMNSMEN----VSF 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              LQ+  +  +I+                     +      + +        +Q    ++
Sbjct: 108  ELLQQFSSNLIIIF--------------------KNVADEHRDI--------VQDFDSHE 139

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                     L     +  V   N  + + +D +    L A+  +T +             
Sbjct: 140  DTYLDHRSVLVQ--GIKHVWIQNVCYQTRQDADTISALAAIRDNTKLD-----------L 186

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            + ++ +  + F    E  +  +         +            +      +   +E   
Sbjct: 187  IHDQEDFGAHFLTEKEIKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQYQTPNDESAK 246

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            K +      L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ 
Sbjct: 247  KYLW---RVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKMNDVM 303

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ VI+Y
Sbjct: 304  VGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQY 363

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            VQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +      
Sbjct: 364  VQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQI 423

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            DD  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +      
Sbjct: 424  DD--FKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG-- 479

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612
             +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + LL
Sbjct: 480  LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFDLL 539

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+ 
Sbjct: 540  SQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQ 599

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ F
Sbjct: 600  YLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHF 659

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  +
Sbjct: 660  IEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANIL 719

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +  + + +K  +  ++A++ +I I+PP++N     +K     IY S+  IKGVG  + + 
Sbjct: 720  SNVIGSEKKTAQMIEEAKKQSITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKV 779

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +   
Sbjct: 780  IVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDG 839

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
               +E++       +F       + K   E       ++  + E+  LGFY S HP+D  
Sbjct: 840  DLNIEQD-----GFLFD----ILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD-- 888

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                         +         I +       +Q +T+ G  + +VT ++  +  +   
Sbjct: 889  -KKFVAKQYLTIFKLSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLDGVI 945

Query: 1032 FP 1033
            FP
Sbjct: 946  FP 947


>gi|329946827|ref|ZP_08294239.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 170
            str. F0386]
 gi|328526638|gb|EGF53651.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 170
            str. F0386]
          Length = 1265

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 292/1128 (25%), Positives = 460/1128 (40%), Gaps = 142/1128 (12%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     +  L  HS+YS L+GA   +++          A+A+TD N +   ++ +Q   A
Sbjct: 126  MTNRHRYAELHAHSTYSFLDGANEPDDLASAAIELGLEALALTDHNGVPGIVKHAQAGRA 185

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G+  + G +L +                     + +L     GY  L+  +S+  L   
Sbjct: 186  HGLPTVHGTELTLADGS----------------HLPVLARNPAGYHLLVSAISQHNLDAG 229

Query: 125  GKQSVRICLSWLQEI-------GTEG----LIMLTGGSSGPIDRAFFFN------SSQVA 167
             ++     L  L           T G     ++LTG  +GP+ RA              A
Sbjct: 230  ERRDPAHDLPTLASALRAVPTSHTGGTSGTCLILTGTVNGPLRRALGDPHRPGTWDLAAA 289

Query: 168  EKRLLTFKKLF--GDR----------------------------LYVNLQRHRGY-DRYR 196
            +  L    +LF   DR                            L V L    G  D   
Sbjct: 290  DTCLGHLAELFAAPDRGRPVGSSATAHTTHVEGGGHVEGDAAVGLAVELTLDGGPTDAAL 349

Query: 197  ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKN 256
               + +LA+ H LPLVAT         D    DVL A    T +            +L+ 
Sbjct: 350  TKILARLAHAHRLPLVATGAVRCARPTDARLADVLTATRLVTDLEGARGHLPAIGRWLRG 409

Query: 257  RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
              +M  +    P+A++   ++A   +F L + AP LP     E           LR    
Sbjct: 410  AQDMARLHRRSPDAVDLAADLASDLAFDLSLIAPDLPDADVPEG----YTPTTWLRELTR 465

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             G                    + L+ EL+VI  + F GYFLIV   +++ +++ I    
Sbjct: 466  QGATRHYG-----TPQEHPRAWEVLNHELDVIESLGFPGYFLIVHSIVEFCRQSGIL-CQ 519

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGS A S   YAL IT +D +R  +LFERFL+P+R   PD D+D    RR+EVI++V +
Sbjct: 520  GRGSAANSAVCYALGITAVDAVRHKMLFERFLSPERGGYPDIDLDIEACRREEVIQHVYS 579

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            +YG +  AQ+    S + ++A+RD  RAL  P    D   K +             A   
Sbjct: 580  RYGRDCAAQVANVISYRPRSAVRDAARALGHPAGVQDAWAKEMDRW----------ATVR 629

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
                   +D     +L++++KL  L RH   H  G+V+  RP++++ P+      +  V 
Sbjct: 630  PGGLTGRSDEVPAPVLDVAEKLLRLPRHLGVHPGGMVLCGRPVTEVCPVRWATMDNRSVL 689

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV------------------KVDL 598
            Q++     +AGL+KFD LGL +LT L+ +   LA+RG                      L
Sbjct: 690  QWDKDDCAEAGLVKFDLLGLGSLTALRLAFATLAERGQTVPDAVEEGELRTSQTGRPWGL 749

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
              +P +D   Y LLT   T+G+FQ+ES      L  ++P    DI+  V+L RPGPI   
Sbjct: 750  HTLPEEDPAVYRLLTAADTVGVFQVESRAQMATLPRLRPKEFYDIVVEVALIRPGPIQGD 809

Query: 659  --VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
                Y  R+  +E++  +H  + P L  T GV ++QEQ+MQIA   +G+S +EAD LR+A
Sbjct: 810  AVNPYIRRRLKREQVTYLHDSLKPALARTLGVPLFQEQLMQIAVDAAGFSPAEADTLRQA 869

Query: 717  M-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M  K+  E MD    R ++G    GI +  A  I+  L  FA++GF +SHA ++A + Y 
Sbjct: 870  MGAKRSIERMDALHGRLVAGMKAQGIDEPTAEKIYSKLRSFAEFGFPESHAFSFAYLVYA 929

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---- 831
            +AW+K   P +F A  +  +       +    DAR+  ++++P  VN       V     
Sbjct: 930  SAWLKARKPEDFYAGVLAAQPMGFWSPQSLVADARRHGVRVLPADVNRSLAQATVEQRED 989

Query: 832  ---------------------------DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFD 863
                                       D  +   LA IKG+G   A+ I+    A  P+ 
Sbjct: 990  RREANRSDQWEPLVPHPAVPSSLDVHDDLAVRLGLAPIKGLGERLAQAIVTERCAHGPYQ 1049

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
             L D   RV    L+R  LE+L  +GALD  G  R + L +   +      +      + 
Sbjct: 1050 DLTDLARRVS---LSRSRLEALAASGALDSLGVERRRALWAAGVLSDEHGQIRGASRREQ 1106

Query: 924  ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
               F       +         +     R   +  + G    G PL   +P L   G+   
Sbjct: 1107 GAWFQPTLAGTAVGAIAPPLPIMTGRERQAADLNLTGVSTQGSPLTSLRPGLAADGVLTA 1166

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             +      GN +R+A +V  +Q+  T  G  + ++   +         
Sbjct: 1167 ADLSGQEHGNRVRVAGVVTHRQRPHTASG--MIFLNLEDETGLLNVAC 1212


>gi|70726223|ref|YP_253137.1| DNA polymerase III subunit alpha [Staphylococcus haemolyticus
            JCSC1435]
 gi|68446947|dbj|BAE04531.1| DNA polymerase III, alpha chain [Staphylococcus haemolyticus
            JCSC1435]
          Length = 1067

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 328/1024 (32%), Positives = 534/1024 (52%), Gaps = 78/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H++Y LL  +L +N+++ K   +    +AITDTN L+   +F      A I+PI 
Sbjct: 3    AHLNLHTTYDLLNSSLRINDVVKKAQNNHYDTLAITDTNVLYGFPKFYDACIKANIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  +++        T             V+L    +G + L +L S + +    KQ   I
Sbjct: 63   GMTVNVTDGLYTIET-------------VVLAINNDGLRSLFQLSSAIKM----KQKEVI 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             + WL++  T   I+                  + A +   +  + F        Q H+ 
Sbjct: 106  SVEWLKKYSTNFAII-----------------FKQANQSHYSIVEQF--------QNHQN 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                  +    LA+ + + +V   N+ +L++ED E    L A+ ++T +   +      +
Sbjct: 141  I---FINHSSDLAFYNNIRVVWFKNARYLNQEDVETIPALEAIKNNTKIDLVNDTEDIGE 197

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            H+ K         +   E   NT+E+A  C+  L+ H  +LP+F     +      +  L
Sbjct: 198  HFPKQNEL--ETLNIDREVWNNTLELASLCNASLEYHQNLLPKFDAPSGN----SSKEYL 251

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
             ++  + L+              + Y +RL+ E  VI  M F  YFLIV+D I +AK ++
Sbjct: 252  WSQLQSSLKKMELNHD-------ERYTKRLEHEYRVITEMGFEDYFLIVSDLIHYAKTHD 304

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ ++ L IT IDP+RF+LLFERFLNP+R++MPD DIDF   RR+ VI
Sbjct: 305  VMVGPGRGSSAGSLVSFLLGITTIDPIRFNLLFERFLNPERVTMPDIDIDFEDTRRERVI 364

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YVQ+KYG  RV+ I+TFG L  +A  RDVGR +      ++ + KLIP+     +    
Sbjct: 365  QYVQDKYGKHRVSGIVTFGHLLTRAVARDVGRIIGFNDKTLNEISKLIPHQLGITLDKAY 424

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
              +D +F++    +   ++  E+S+KLEGL RH STHAAGI+I D+PL    P+      
Sbjct: 425  --EDEQFKQFVHRNHRHEKWFELSKKLEGLPRHTSTHAAGIIINDQPLYNYAPLTLGDTG 482

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + +  + +      ++  IPF+D + + 
Sbjct: 483  --LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIITQVKKDLNISLEIEEIPFNDVDVFK 540

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R+ L+ +QP+  EDI+A+ SLYRPGP++ I  Y +R++ + +
Sbjct: 541  LLSRGDTTGIFQLESEGVRKVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYISRRHNESE 600

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            I  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  +AD+LRRAM KK +  ++ +++
Sbjct: 601  IKYLHPDLEPILKNTYGVIIYQEQIMQIASQFASFSYGQADILRRAMSKKNRAVLESERQ 660

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ GA KN   + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  A++K HYP  F A 
Sbjct: 661  HFVEGAIKNKYDEKISKQIFDLILKFADYGFPRAHAVSYSKIAYIMAYLKVHYPNYFYAN 720

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + N  K      +A+   ++I+PP++N     ++   + IY SL AIKGVG  + 
Sbjct: 721  ILSNVVGNESKTAAIIDEAKNQKLKILPPNINESHWYYRATKSNIYLSLGAIKGVGYQSV 780

Query: 851  RHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I++    +  +    DF  R+ ++   R++LESL+  GA D FG +R  LL S+D + 
Sbjct: 781  KSIVDERYQNGKYKDFFDFTRRIPNRIKTRKLLESLILVGAFDTFGKTRSTLLSSIDQVL 840

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 VE        ++        + K +       +  +    E   LGFY S HP++
Sbjct: 841  DEVSNVE------QNDLL---LDILTPKQSYADKDEFSDQMISSYEMEYLGFYVSNHPVE 891

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                   K    G       +    I +   V   +Q +T+ G  + ++  ++     +A
Sbjct: 892  ---KQFNKKQYLGIYTLSNVVNHKPILV--QVDQIKQIRTKNGQNMAFLVLNDGRHTMDA 946

Query: 1030 NFFP 1033
              FP
Sbjct: 947  VLFP 950


>gi|89054049|ref|YP_509500.1| DNA polymerase III, alpha subunit [Jannaschia sp. CCS1]
 gi|88863598|gb|ABD54475.1| error-prone DNA polymerase, DnaE-like protein [Jannaschia sp. CCS1]
          Length = 1097

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 255/1049 (24%), Positives = 438/1049 (41%), Gaps = 84/1049 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +V L + + +S L GA    ++           +   D N +   +    +A  A I P
Sbjct: 22   DYVELGLTTCFSFLHGASDAVDLATTAHGLGYDKLGCADLNTMAGVVRLHAEALKAQITP 81

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-----Q 124
            +IGC+L +   ++                 +        Y RL  L+S+  + D     Q
Sbjct: 82   VIGCRLRLVTGEDF----------------LAYPRDRAAYGRLCTLLSKGKMTDVDGAWQ 125

Query: 125  GKQSVRICLSWLQEIGTE-GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             K +  I L  L     +  LI L G          F    +   + L T + +    LY
Sbjct: 126  AKGACDITLDDLAGHSKDVQLIALPGPRLDH-----FEAGFKRLIRALPTLRHIAVSYLY 180

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
                   G DR R +++ +LA  H L ++ATN+  + + +     DV+  + H T + + 
Sbjct: 181  ------EGDDRARINRLDRLAQAHGLGIMATNDVRYHAPDRRPLQDVMTCILHKTTIQKA 234

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                    + +LK+ ++M+ +F+  P A+  T  IA  C+F L+  A   P+    E   
Sbjct: 235  GFLLNANAERHLKSPAQMIQLFAQWPHAIRATRAIADACTFDLRELAYEYPKETVPEG-- 292

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +  +  L      G   R   G              L  EL +I +M    YFL +  
Sbjct: 293  --RTPQGYLEELTWKGAARRYPDG------IPDAISTTLRKELALIKKMDIPQYFLTIEQ 344

Query: 363  FIQWAKKNNIPV--GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             + +A+    P     GRGS A S   Y L IT +DP    LLFERF++ +R   PD D+
Sbjct: 345  IVDYARHKCDPPILCQGRGSAANSAVCYVLGITAVDPNTNDLLFERFISEERKEPPDIDV 404

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EVI+++ N+YG +R A   T    + + A+R+VG+ + +       L K I 
Sbjct: 405  DFEHERREEVIQHIYNRYGRDRAALCATVIHYRPRMAVREVGKVMGLSEDITSALAKTIW 464

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                  V     A ++      L DP + R ++++ ++ G+ RH   H  G ++ ++ L+
Sbjct: 465  GSWGREVG----AREAAEAGIDLKDPLMARTIKLADQMIGMPRHLGQHVGGFILTEKKLN 520

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLS 599
            + VP+     +D    +++   I++  ++K D L L  LT ++K+ D +     +   L+
Sbjct: 521  ETVPIGNGAMADRTFIEWDKDDIDELRILKVDILALGMLTCIRKAFDLIKAHYGRTLTLA 580

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I   D  TY +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   +
Sbjct: 581  SIEQGDRATYDMLCKGDSLGVFQVESRAQMNMLPRLKPREFYDLVIQVAIVRPGPIQGDM 640

Query: 660  VYN--NRKNGKEKIVSIHP-------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            V+    R+ GKE      P        +  +L  T+GV I+QEQ M++A + + +S  EA
Sbjct: 641  VHPYLRRRAGKEPEDYPSPKPPHDPEELRKVLSRTKGVPIFQEQAMKLAMVAAEFSPDEA 700

Query: 711  DVLRRAMGKKI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            + LR+AM     K  + + +E+ +S     G     A   F  +  F DYGF +SHAA++
Sbjct: 701  NQLRKAMATFRSKGTIGELEEKMVSRMINRGYDPEFAHRCFNQIKGFGDYGFPESHAASF 760

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A + Y ++W+K HYP  F AA +  +        +  +DAR+  + +    VN    D  
Sbjct: 761  AHLVYISSWIKCHYPDVFCAALLNSQPMGFYAPAQIVRDAREHGVIVRAADVNYSGWDTT 820

Query: 830  VG-----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            +         +      I G+    A  I+ A    PF  L D   R  +   +   L  
Sbjct: 821  LEPVGQGQFAVRLGQRQIDGMRQDVADRIVTAR-HTPFTDLIDLRQRAQT---DAGSLRK 876

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  A A+      R Q L     +                 +FA +K    D+I      
Sbjct: 877  LAAADAMRSMMLDRRQALWETRALHDAQD----------LPLFAEQKD-EGDEIRF-DLP 924

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                      + +        HP+   +  + + G            G +++LA +V+ +
Sbjct: 925  EMPICEHVVADYQTTRLSLKAHPMSFLRKSMERQGYHHTGALAHMRNGQSVKLAGIVLIR 984

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q+  + KG  + ++T  +         +P
Sbjct: 985  QRPGSAKG--VCFITVEDEIGVANLVVWP 1011


>gi|86137385|ref|ZP_01055962.1| DNA polymerase III, alpha subunit, putative [Roseobacter sp. MED193]
 gi|85825720|gb|EAQ45918.1| DNA polymerase III, alpha subunit, putative [Roseobacter sp. MED193]
          Length = 1130

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 260/1072 (24%), Positives = 431/1072 (40%), Gaps = 105/1072 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--- 66
            ++  L V ++++ L GA     ++ + A     AIAITD N+L   +             
Sbjct: 25   AYAELCVTTNFTFLTGASHPEELVMRAAELGLSAIAITDQNSLAGVVRAWSALKKLKQES 84

Query: 67   -----I-----------------------------QPIIGCQLDIDMQDNLKMTNQGKTP 92
                 I                             + I+GC+L +               
Sbjct: 85   QEALQIRSHQQVDPSSRQDSSQGRPLTRPPVLSLPKLIVGCRLVL--------------- 129

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
              +    + L      Y+RL  L++                  +       LI L     
Sbjct: 130  QDSNLHWIALPQDKAAYKRLTRLLTLGKRRTTKGGCDLYTKDLIAACKGMILIALP---- 185

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPL 211
                R +   S   +   +    +   +++++    H  G D+   +   Q A     P+
Sbjct: 186  ---QRNWSQRSLSQSIPEIQAMGRHHPNQVFLGAAPHYDGSDQAYLASCAQAAQRASAPM 242

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
            VA  + L       +  DVL  + H  T+     R     +  LK  S+M  +F   P A
Sbjct: 243  VAVGDVLMHRAGRRQLADVLTCMRHHITIDEIGTRALPNGERRLKAGSDMARVFRHYPAA 302

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
            L  TVEIA +CSF L         +     +   +  ++ L   A  GL+ R  +G    
Sbjct: 303  LRRTVEIAAKCSFDL-----GQLSYEYPHEEMEAQTPQHRLEQLAKEGLKRRYPEG---- 353

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                +   Q ++ EL V+ ++ F  YFL V D +Q+AK   I    GRGS A S+  Y L
Sbjct: 354  --PPERAIQLMEKELAVVRQLNFPAYFLTVHDIVQFAKSQGIL-CQGRGSAANSILCYLL 410

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             ITD+ P   +++FERF++  R   PD D+DF  +RR+EVI+++  KYG ER     T  
Sbjct: 411  GITDVSPDMIAMVFERFVSKHRGEPPDIDVDFEHERREEVIQWIYQKYGRERAGLCATVI 470

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
              + +AA+R+VG+ + +       L   I       +    I +        L D  + +
Sbjct: 471  HFRTRAAIREVGKVMGLSQDVTAGLSGQIWGMSTGGLDFTRIRE----LGLDLKDRRLMQ 526

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
             L +  +  G  RH S H  G VI    L +L P+      D  V  ++   I+  G++K
Sbjct: 527  TLHLIGEFIGFPRHLSQHVGGFVITRGRLDELAPIENAAMEDRTVICWDKDDIDALGILK 586

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             D LGL  L+ ++KS   L Q       ++ IP  D  TY +L     +G+FQ+ES    
Sbjct: 587  VDILGLGMLSCIRKSFALLQQHETLSHSIASIPQGDVATYDMLCRADAVGVFQVESRAQM 646

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQG 687
              L  M+P    D++  V++ RPGPI   +   Y  R+NG EK     P ++ + + T G
Sbjct: 647  NFLPRMRPREFYDLVIQVAIVRPGPIQGDMVQPYVRRRNGLEKAEPFGPALEEVTRRTLG 706

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIA 746
            V ++QEQ MQIA + +G+S  EAD LRR++    +   +   +++FI+G   NG    +A
Sbjct: 707  VPLFQEQAMQIAVVGAGFSPEEADHLRRSLASFRRMGTIATYRDKFITGMLNNGYDPDMA 766

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
               F  +  FADYGF +SHAAA+A++ Y +AW+K H+P  F  A +  +        +  
Sbjct: 767  ERCFGQIEGFADYGFPESHAAAFAMLVYVSAWLKCHHPAIFSCALLNSQPMGFYAPAQIV 826

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKP 861
            +D R+ +++  P  VN    D  +         +      IKG     A  I+ A  +  
Sbjct: 827  RDTREHDVETRPICVNRSAWDNTLERRPDGALALRLGFRQIKGFKKEDAEWIVAARGNG- 885

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + + E    R   +      L  L  A A    G +R   L  +  I          R+ 
Sbjct: 886  YPNPEALWLRAGLRP---DALARLGEADAFCDMGLTRRDALWQIKAI----------RSK 932

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
            K   +F       + +             +   +          HP+++ +P L   G+ 
Sbjct: 933  KPLPLFNDPIDGENIQEPKIDLPGMQLGEQVVEDYVATRLSLRAHPMELLRPALT--GLV 990

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +        G    +  +V+++Q+  T  G  + ++T  +         +P
Sbjct: 991  THAALPEIPLG-RYSVCGLVITRQRPGTASG--VIFLTLEDETGVSNVVVWP 1039


>gi|167966837|ref|ZP_02549114.1| error-prone DNA polymerase [Mycobacterium tuberculosis H37Ra]
          Length = 955

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 271/905 (29%), Positives = 450/905 (49%), Gaps = 45/905 (4%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 42  SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 101

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ + G +L +        T + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 102 VRTVFGAELSL------GATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 155

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
              R     L E       +LTG   G + +A        A++ L      F   R+ + 
Sbjct: 156 GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 215

Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           L  H    D  R + +  LA    + +VAT  + F           + A+     +    
Sbjct: 216 LTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAA 275

Query: 245 RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                    +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +    
Sbjct: 276 GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPDG--- 332

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              E++ LR+  +AG   R      A   ++Q     ++ EL VIA+++F GYFL+V D 
Sbjct: 333 -HTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDI 386

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            ++ + N+I    GRGS A S   YAL +T +DP+   LLFERFL+P R   PD DID  
Sbjct: 387 TRFCRDNDIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIE 445

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   K + +  
Sbjct: 446 SDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSHWT 505

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                +  I +               ++++++ ++  L RH   H+ G+VI DRP++ + 
Sbjct: 506 GQADDVDGIPE---------------QVIDLATQIRNLPRHLGIHSGGMVICDRPIADVC 550

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
           P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+   ++VDL+ + 
Sbjct: 551 PVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLD 610

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660
             +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  
Sbjct: 611 LSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHP 670

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
           Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAM  K
Sbjct: 671 YIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSK 730

Query: 720 KIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           +  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A + + +AW
Sbjct: 731 RSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAW 790

Query: 779 MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIY 836
            K H+P  F AA +  +       +    DAR+  + +  P VN              + 
Sbjct: 791 FKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVR 850

Query: 837 YSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
             L A++ +G   A  ++    A+ PF SL D  SRV   +L+   +E+L  AGAL CFG
Sbjct: 851 LGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFG 907

Query: 896 YSRMQ 900
            SR +
Sbjct: 908 MSRRE 912


>gi|260903724|ref|ZP_05912046.1| error-prone DNA polymerase [Brevibacterium linens BL2]
          Length = 1127

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 277/1043 (26%), Positives = 454/1043 (43%), Gaps = 74/1043 (7%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              S  +  L VHS +S L+GA     ++   AA    ++A+TD N L+ A+ F+  A   
Sbjct: 87   TSSVEWAELHVHSQFSFLDGASDPEELVAAGAAAGLTSLALTDHNGLYGAVRFAHAAAEV 146

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G+  + G +L + +++ +          P    +++L    EGY RL   ++   L  + 
Sbjct: 147  GLPTVFGAELSVGLEEKIP-----GQTDPDATHLLVLARGVEGYHRLSMAITEANLAGE- 200

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184
            K      L  L  + +    +LTG   GP+ RA   N        L     LFG DRL V
Sbjct: 201  KNRPVFGLEELAAM-SGDWTILTGCRKGPLRRAL--NDPDGGLGALRKLIALFGADRLAV 257

Query: 185  NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE-AHDVLMAVAHSTVVSQ 242
             L R     D  R   +  LA    LP+VA+N+  F +   ++ A       +  ++   
Sbjct: 258  ELSRDGTPDDDERLRHLGDLAQRTHLPIVASNSVHFATRAQWKSAQVRASVRSRLSLDEL 317

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                  T +  +    EM + F          +E A                 + +    
Sbjct: 318  AGWLPATANARIHTGEEMAARFP------RQALENAVAIGRECSFVLNSARPDLPRAPMP 371

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +  E  LR         R                 +LD E+++IA + F GYFLIV D
Sbjct: 372  DDRGAEEYLRELIEDRGARRYG-----TRAENPKAWAQLDREMDMIATLGFCGYFLIVYD 426

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
              ++  +  I    GRGS A S   Y L IT +D ++  LLF+RFL+PDR   PD DID 
Sbjct: 427  ITEFCHRVAI-FCQGRGSAANSAVCYVLDITAVDAVKHELLFDRFLSPDRKGYPDIDIDI 485

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EVI+YV + +G ER AQ+    + +AK+A+RD   +L     Q D   K     
Sbjct: 486  ESGRREEVIQYVYDHFGRERAAQVANVITYRAKSAIRDAAFSLGYEPGQQDAFSKASNRW 545

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
               P                   P    +L I+  L G  RH   H+ G+++ DRP+ ++
Sbjct: 546  STLP--------------EAEDSPVPAPVLTIADDLLGSPRHLGIHSGGMILADRPIGEV 591

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLI 601
            VP+ +       V Q++        L+KFD LGL  LT L + +D + +   + ++ + I
Sbjct: 592  VPIEKATMGHRTVVQWDKDDCAVMDLVKFDLLGLGMLTALHEMVDLVHRHTGELIERAHI 651

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIV 659
              +D   Y +L     +G+FQ+ES      L  ++P+   D+   V+L RPGPI   ++ 
Sbjct: 652  DDEDEAVYTMLQKADAVGVFQVESRAQLATLPRLRPETFYDLAVQVALIRPGPIQGGSVH 711

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-G 718
             Y  R+ G +K+  +HPL+   L +T GV ++QEQ+MQ+A  + G++ ++AD LR+AM  
Sbjct: 712  PYIRRRQGLDKVEYLHPLLRKSLAKTYGVPLFQEQLMQMAIDVGGFTGADADQLRQAMGS 771

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            ++ ++ M +  ++F +GA+ NG+ +  A +IF  +A FA+YGF +SHA ++A + YQ+AW
Sbjct: 772  RRSEKRMTELAQKFQTGAAANGVDEETAESIFSTIAAFANYGFPESHAISFANLVYQSAW 831

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------- 831
             K H+   F    +  +       +    DAR+  ++I+P  +        +        
Sbjct: 832  FKYHHHAAFTVGLLRSQPMGFYSPQSLVADARRHGVRILPVDIRHSMAGSDLERLESDGT 891

Query: 832  ----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                +  I   L ++  VG + A  I+   A  PF S+ D   R     + ++ LE L  
Sbjct: 892  GDSGEFGIRLGLDSVSHVG-SFAEVIVTERAKAPFTSVADLAERT---GIGKQGLEGLAT 947

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGAL CF   R Q L     +                        T S   TL      +
Sbjct: 948  AGALSCFDLDRRQALWLAGGV--------AGAHPGVLP----GTATISSAPTLPTMDAFD 995

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +++    E    G    G+P ++ +  L + G     ++ A   G  + +AA+V  +Q+ 
Sbjct: 996  TTL---AELFSTGITVDGYPTEILRASLIERGYASTADAAAAADGTRMTVAAIVTHRQRP 1052

Query: 1008 KTRKGSRIGWVTFSEPAKEYEAN 1030
             T  G  I ++   +        
Sbjct: 1053 ATASG--ITFINLEDEFGMLNVV 1073


>gi|299134862|ref|ZP_07028054.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2]
 gi|298590672|gb|EFI50875.1| DNA polymerase III, alpha subunit [Afipia sp. 1NLS2]
          Length = 1108

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 254/1067 (23%), Positives = 435/1067 (40%), Gaps = 98/1067 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ- 68
             +  + + +++S L G       + + +  + P I I D N L   +    +     ++ 
Sbjct: 5    DYAEIGITTNFSFLRGGSQPQEYVHQASEHRLPVIGIADRNTLAGVVRAYSELANHEVKY 64

Query: 69   ---PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
                +IG +L                     P I++       Y RL +L+S   L  + 
Sbjct: 65   KPRLLIGARLVFTDG---------------TPDILVYPRDRAAYGRLCQLLSHGKLQAE- 108

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            K    + L  L +     L++LT               + VA K L   K+   D +++ 
Sbjct: 109  KGECLLTLDDLLDFSEGQLLVLTLPHRFE---------TTVALKVLGRLKQSRADGVWLA 159

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS-QK 243
                +RG DR R S++ Q+A T  +PL+ATN+ L+         DVL  +   T +    
Sbjct: 160  ASLLYRGDDRRRLSRLYQIAATGRVPLLATNDVLYHHPARRPLQDVLTCILEKTTIHAIG 219

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             + +   + ++K   EMV +F DLPEA+  T+  A R +F L       P         +
Sbjct: 220  KKLQANAERHMKPGYEMVRLFRDLPEAVAETMRFADRITFALDELKYQYPDEPVP----L 275

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             K  +  L +   AG++     G        +  +  ++ EL +I ++ ++ YFL V D 
Sbjct: 276  GKTAQEHLTDLVNAGIQSYFPSGID------EKLQATIEKELRLIEKLGYAHYFLTVHDI 329

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +Q+A+  N+    GRGS A S   Y L IT ++P    +LFERF++  R+  PD D+DF 
Sbjct: 330  VQYARSQNVL-CQGRGSAANSAVCYMLGITSVNPAETDVLFERFISEKRLEPPDIDVDFE 388

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RR+EV++YV  +YG  R A + T    + ++A+RDVG+AL +       L   +    
Sbjct: 389  HSRREEVMQYVYRRYGRHRAAIVATVIHYRPRSAIRDVGKALGLTEDVTAALADTVWGSW 448

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               VS   I    R       +  + R +E++ +L    RH S H  G V+    L+  V
Sbjct: 449  GTGVSDMQI----RQAGFDPQNGMIRRAVELATELIEFPRHLSQHVGGYVLTQDSLNTYV 504

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA----QRGVKVDLS 599
            P+      D    +++   I+   ++K D L L  LT ++K  D +A    +R    D++
Sbjct: 505  PIGNAAMEDRTFIEWDKDDIDTLKMMKVDVLALGMLTCIRKCFDLVADHKGKRYQLSDIN 564

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
                D    + +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   +
Sbjct: 565  AEKDDSGPVFDMLCRGESLGVFQVESRAQMNMLPRLKPRTFYDLVIEVAIVRPGPIQGNM 624

Query: 660  VYN---NRKNGKEKIVSIHP------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            V+     R+   E+I   +P       +  +L +T GV ++QEQ M+IA   + ++  EA
Sbjct: 625  VHPYLKRRQMKPEEIEYPYPKSGNKNELKDVLCKTLGVPLFQEQAMRIAMAAAEFTPEEA 684

Query: 711  DVLRRAMGKKIKEEMDK-QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            + LRRAM            ++R +    K G     A + F+ +  F  YGF +SHAAA+
Sbjct: 685  NGLRRAMATFRNVGTMPKFEKRMVGRMIKRGYDPAFAQSCFDQIKGFGSYGFPESHAAAF 744

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A + Y +AW+K  +P  F    +  +        +   DARQ  +++    V+       
Sbjct: 745  AQLVYVSAWLKCFHPDAFACGLLNSQPMGFYAPAQIVGDARQNGVEVREIDVSHSFSQNT 804

Query: 830  VGD-----NRIYYSLAAIKGV------------------GTTTARHIMEASADKPFDSLE 866
            +G+     + ++     I G                          I+ A   + F SLE
Sbjct: 805  LGERSGKYHVLHLGFRQIDGFKCADPDEERWRRIQGKTKSEDWGEAIVAARLRQSFTSLE 864

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF       KL +R L  L  A A    G  R   L ++  +                 +
Sbjct: 865  DFAR---ETKLPKRALILLADADAFRSLGLDRRSALWAIRRLPDNVS----------LPL 911

Query: 927  FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
            F                           + + +     GHP++  +    K GI      
Sbjct: 912  FQSTAAREQPDEDSAPLPQMPLPEEVVADYQTIRLSLKGHPMEFLRATFTKQGIVSCAAI 971

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    +R A +V+ +Q+  + KG  + ++T  +         +P
Sbjct: 972  AHENDKRRVRCAGVVLVRQRPGSSKG--VVFMTLEDETGIANIVVWP 1016


>gi|298694972|gb|ADI98194.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            ED133]
          Length = 1065

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 308/1022 (30%), Positives = 503/1022 (49%), Gaps = 81/1022 (7%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G 
Sbjct: 5    LNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFGM 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + +    N   T             V+L     G + L +L S++ +         +  
Sbjct: 65   TIYVTNGLNTIET-------------VVLAKDNNGLKDLYQLSSKIKMNSMEN----VSF 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              LQ+  +  +I+                     +      + +        +Q    ++
Sbjct: 108  ELLQQFSSNLIIIF--------------------KNVADEHRDI--------VQVFDSHE 139

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                     L     +  V      + + +D +    L A+  +T +             
Sbjct: 140  DTYLDHQSVLVQ--GIKHVWIQTVCYQTPQDADTISALAAIRDNTKLD-----------L 186

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            + ++ +  + F    E  +  +         +            +      +   +E   
Sbjct: 187  IHDQEDFGAHFLTEKEIKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQYQTPNDESAK 246

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            K +      L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ 
Sbjct: 247  KYLW---RVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVM 303

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ VI+Y
Sbjct: 304  VGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQY 363

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            VQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +      
Sbjct: 364  VQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQI 423

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            DD  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +      
Sbjct: 424  DD--FKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG-- 479

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612
             +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFD+ + + LL
Sbjct: 480  LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDNQKVFELL 539

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+ 
Sbjct: 540  SQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHNPSKVQ 599

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ F
Sbjct: 600  YLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHF 659

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  +
Sbjct: 660  IEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANIL 719

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + + 
Sbjct: 720  SNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKV 779

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +   
Sbjct: 780  IVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDG 839

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
               +E++       +F       + K   E       ++  + E+  LGFY S HP+D  
Sbjct: 840  DLNIEQD-----GFLFD----ILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD-- 888

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                         +         I +       +Q +T+ G  + +VT ++  +  +   
Sbjct: 889  -KKFVAKQYLTIFKLSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLDGVI 945

Query: 1032 FP 1033
            FP
Sbjct: 946  FP 947


>gi|257068737|ref|YP_003154992.1| DNA polymerase III, alpha subunit [Brachybacterium faecium DSM 4810]
 gi|256559555|gb|ACU85402.1| DNA polymerase III, alpha subunit [Brachybacterium faecium DSM 4810]
          Length = 1141

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 274/1083 (25%), Positives = 457/1083 (42%), Gaps = 99/1083 (9%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            ++  +  L  HS +S L+GA S  ++  + A     AIA+ D + L  A+ F+  A  AG
Sbjct: 47   RAVDYAELHAHSHFSFLDGASSPEDMAGQAARLGLGAIALVDHDGLPGAVRFATAAAEAG 106

Query: 67   IQPIIGCQLDIDMQDNLKM--------TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            I  + G +L + ++               +   P P    +++LV    GY++L   ++R
Sbjct: 107  IATVFGAELSLGLEPGAVTASSTPVVSAPRTGVPDPDGEHLLVLVRDTAGYRQLSAAIAR 166

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEG-LIMLTGGSSGPIDRA----FFFNSSQ----VAEK 169
             +L  + K   R  L+ L  +  EG  ++LTG   G + RA                A  
Sbjct: 167  AHLDSRQKGVPRYRLAELSRLAREGHWLILTGCRKGAVTRAAAEHLEAGDLDAAAHAAAA 226

Query: 170  RLLTFKKLFG-DRLYVNLQRHRGYDRYRESQVVQLAYTH----------ELPLVATNNSL 218
             +    +LFG   + V L    G +       +                 LPLVA+ N+ 
Sbjct: 227  AITRLVELFGPGNVAVELMVGGGGEADELHDALAQGARLVRESHGLDEISLPLVASTNAH 286

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            +    D    D   A+     +++ D    +   +L++  EM  +    P A+     + 
Sbjct: 287  YARPSDRRLADTHAALRAGVPLAEADPYLSSRPAHLRSGEEMAQLLPRYPGAIAQAARLG 346

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK-AVAGLEVRLAQGAIAKGYHAQDY 337
            R C+  L++ AP LP F      D    E + L     + G E    +    +       
Sbjct: 347  RDCALDLRLLAPDLPPFPVPAGHD----EASWLVELVEIEGRERYGPRPTPERPEQVPGA 402

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
              ++D EL VI  ++F GYFLIV + + +     I    GRGS A S   YAL IT ++P
Sbjct: 403  WAQIDHELKVITDLRFPGYFLIVHEIVDFCAGEGIL-AQGRGSAANSAVCYALGITAVEP 461

Query: 398  LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
            +   LLFERFL P+R   PD DID   DRR+EVI++V  +YG E  AQ+    + +AK A
Sbjct: 462  VGHQLLFERFLAPERDGPPDIDIDIASDRREEVIQHVYERYGRENAAQVANVITYRAKLA 521

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
            +RD  RAL       D                       R   A         ++E++ +
Sbjct: 522  VRDAARALGYDTGAQDAFA----------------KRVERSFSALREADVPGDVVELAHR 565

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            L    RH   H+ G+V+ DRP+ ++ P+     +D  V Q++     +AGL+KFD LGL 
Sbjct: 566  LRDAPRHLGIHSGGMVLCDRPVIEVCPVQWAAMADRSVLQWDKDDCAEAGLVKFDLLGLG 625

Query: 578  TLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             LT L  +L  +A+      +L  +P +D   Y +L    ++G+FQ+ES      L  ++
Sbjct: 626  MLTALDHALRIIAEHHGQHFELHTLPQEDPAVYDMLCAGDSVGVFQVESRAQISTLPRLR 685

Query: 637  PDCIEDIIALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
            P    D++  V+L RPGPI   ++  Y  R+N +E +  +HP ++  L  T G+ ++QEQ
Sbjct: 686  PREFYDLVVEVALIRPGPIQGGSVHPYIRRRNKEEPVTFLHPRLEKSLGRTLGIPLFQEQ 745

Query: 695  VMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            +MQ+   ++ ++ ++AD LRRAM  K+  ++M +  +   +G +++GI    A  +   L
Sbjct: 746  LMQMVVDVADFTPAQADQLRRAMGSKRSTQKMLELSDALFAGMAEHGIVGEDAEAVHRKL 805

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA+YGF +SHA ++A + Y ++++K HYP  F A  +  +       +    DAR+  
Sbjct: 806  LAFANYGFPESHAYSFAYLVYASSYLKCHYPAAFTAGLLRSQPMGFYSPQSLVADARRHG 865

Query: 814  IQIMPPSVNTPCVDFKVG------------------------DNRIYYSLAAIKGVGTTT 849
            +    P V        +                            I   L  ++G+ T T
Sbjct: 866  VLTRGPDVLASRARTDLETDAEHRGYRIDPPGEQIQGEAAAQGPAIRLGLDQVRGISTET 925

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            A  I+        F S+ D   RV   +L  R LE+L  AGALD    SR Q        
Sbjct: 926  AEEIVAERGRGGQFTSVPDLARRV---RLTARQLEALATAGALDALASSRRQ-------- 974

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                  +        E+         +           + +     +    G     HP+
Sbjct: 975  -----ALWAAGAAAQES--PETLPHLAVGAQAPMLPGMSDAEIATADAWATGITLDEHPM 1027

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             + +  L   G+     +        IR+A ++  +Q+  T  G+ + +++  +      
Sbjct: 1028 ALVRQELTADGVLAIAATREAEDSRRIRVAGVITHRQRPATA-GN-VTFLSLEDETGILN 1085

Query: 1029 ANF 1031
               
Sbjct: 1086 VVC 1088


>gi|290961571|ref|YP_003492753.1| DNA polymerase III subunit alpha [Streptomyces scabiei 87.22]
 gi|260651097|emb|CBG74218.1| putative DNA polymerase III, alpha chain [Streptomyces scabiei 87.22]
          Length = 1174

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 270/1066 (25%), Positives = 446/1066 (41%), Gaps = 67/1066 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL+  S +SL  GA     + ++ +     A+A+TD + L  A+ F++    AGI+
Sbjct: 7    PGFTHLRTASGFSLRHGASHPERLAERASERGMDALALTDRDTLAGAVRFAKACAGAGIR 66

Query: 69   PIIGCQLDIDMQDNLKMTNQ-------GKTPFPTVPSIVLLVS-TAEGYQRLIELVSRMY 120
            P+ G +L +++ +      +       G     + P +  L    A G+  L  +VS  +
Sbjct: 67   PLFGAELAVEVPEAAVRRARRRAPVRGGAFIDESTPRVTFLAREGATGWAELCRIVSAAH 126

Query: 121  LLDQGKQS-----VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
                           +  S   E   EGL +L G     + RA        A K L+ ++
Sbjct: 127  ADSGPGGGGSEVPPLLPWS---ESAAEGLTVLLG-PGSDVGRALAAGRPDRAAKLLVPWR 182

Query: 176  KLFGDRLYVNLQRHRGYDR-----YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            + +GD L +    H             ++ V  A    +  V +N   +         DV
Sbjct: 183  ERYGDALRLEAVWHGREGTGPGSLRLAARTVGFAAEQRVRPVLSNAVRYADPGMGPVADV 242

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            L A      V  +              + +      +  A        R         A 
Sbjct: 243  LDAARRLVPVDPRGELDSGEAWLKGADAMLGVAERVVEAAGFRRDTAHRLLEQTRATAAE 302

Query: 291  ILPRFIEKECDDIQKEEENEL----RNKAVAGLEVRLAQGAIAKGYH-AQDYRQRLDFEL 345
             L    +          E  L    R  A   L  R A G +  GY   + Y +R+  EL
Sbjct: 303  CLVDPEDDLGLGTVHFPEPRLVGAGRRTAQRALASRAAAGMVRHGYGARRAYWERMHQEL 362

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            +VIA   F+ YFL VA  +   ++  I V   RGSGAGS+  + L I   DP+   LL E
Sbjct: 363  DVIAHHGFASYFLTVAQVVDDVRRMGIRVA-ARGSGAGSLVNHLLDIAHADPVEHGLLME 421

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFL+  R+++PD DID    RR EV R +  ++G ERVA +    + + + A+RDVG AL
Sbjct: 422  RFLSKRRVALPDIDIDVESARRLEVYRAIIGRFGTERVATVAMPETYRVRHAVRDVGAAL 481

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
             +  + +DR+ K  P+  A      A+ +    R+         RL E+ + L+ L R  
Sbjct: 482  SLDPADIDRIAKSFPHIRARDA-RAALEELPELRQLAGEKQRYGRLWELVEALDALPRGV 540

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            + H  G+++ D  L    P+       LP++QF+   +E  GL+K D LG++  + +  +
Sbjct: 541  AMHPCGVLLSDASLLSRTPVMPTSGEGLPMSQFDKDDVEDLGLLKLDVLGVRMQSAMAHA 600

Query: 586  LDFLA----QRGVKVDLSLIP-FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +  +A    +R     L       D  TY L+ +  TLG FQ+ES G R  +  +QP   
Sbjct: 601  VAEVARATGERVDLDALDFERGAGDPATYELIRSTETLGCFQIESPGQRDLVGRLQPATF 660

Query: 641  EDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
             D++  +SL+RPGP+   +   +   ++G+  +   H  +   L+ET GV+++ EQ++ I
Sbjct: 661  HDLVVDISLFRPGPVAADMVRPFIAARHGRAPVRYPHEDLAEPLRETYGVVVFHEQIIDI 720

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
              L++G    EAD +RR +     E   + +  F   A+  G         + ++  F  
Sbjct: 721  VHLMTGCGRDEADRVRRGLSD--PESQGRIRVWFAQHAAAKGYDAETIQRTWGIVEAFGS 778

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            YGF K+HA A+AV +YQ+AW+KTH+P  F A  +T +     K +    DAR+  + ++P
Sbjct: 779  YGFCKAHAVAFAVPTYQSAWLKTHHPAAFYAGLLTHDPGMYPK-RLLLADARRRGVPVLP 837

Query: 819  PSVNTPCVDFKVG------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
              VN   V   +                I  +L+ + G+    A  I      +P+ SL 
Sbjct: 838  LDVNRSAVAHCIELVSESKGSGEERTWGIRLALSDVHGISEAEAARIA---GGQPYASLL 894

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            DF  R      +R + + L   GALD FG +R  L   L  + + A+            +
Sbjct: 895  DFWERARP---SRPLAQRLAQVGALDAFGANRRDLQLHLTELHRGARGA----GGGQLPL 947

Query: 927  FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
                +   +           +S+ R   E  VL    S + +D ++  L ++G+      
Sbjct: 948  AGGRRTAPAG------LPDLSSAERLSAELGVLSMDVSRNLMDDHRAFLDELGVVSARRL 1001

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T  G  + +A    + Q    R G R+ + T  +     +  FF
Sbjct: 1002 RETRHGETVLVAGAKAATQTPPIRSGKRVVFTTLDDGTGLVDLAFF 1047


>gi|282916962|ref|ZP_06324720.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            D139]
 gi|282319449|gb|EFB49801.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            D139]
          Length = 1065

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 322/1022 (31%), Positives = 518/1022 (50%), Gaps = 81/1022 (7%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G 
Sbjct: 5    LNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFGM 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + +    N   T             V+L     G + L +L S++ +         +  
Sbjct: 65   TIYVTNGLNTIET-------------VVLAKDNNGLKDLYQLSSKIKINSMEN----VSF 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              LQ+  +  +I              F N +      +  F     +  Y+    HR   
Sbjct: 108  ELLQQFSSNLII-------------IFKNVADEHRDIVQVFDSH--EDTYL---DHRSV- 148

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +VQ      +  V   N  + + +D +    L A+  +T +           H+
Sbjct: 149  ------LVQ-----GIKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGAHF 197

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            L    + +       E L     IA++C+  L+ H  +LP++     +  +K     L  
Sbjct: 198  LT--EKEIKQLDINQEYLTQVDAIAQKCNAELKYHQSLLPQYQTPNDESAKKYLWRVLVT 255

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            +                  +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ 
Sbjct: 256  Q------------LKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVM 303

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ VI+Y
Sbjct: 304  VGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQY 363

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            VQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +      
Sbjct: 364  VQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQI 423

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            D+  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +      
Sbjct: 424  DN--FKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG-- 479

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612
             +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFD+ + + LL
Sbjct: 480  LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDNQKVFELL 539

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+ 
Sbjct: 540  SQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQ 599

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ F
Sbjct: 600  YLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHF 659

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  +
Sbjct: 660  IEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANIL 719

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + + 
Sbjct: 720  SNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKV 779

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +   
Sbjct: 780  IVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDG 839

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
               +E++       +F       + K   E       ++  + E+  LGFY S HP+D  
Sbjct: 840  DLNIEQD-----GFLFD----ILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD-- 888

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
              +          +         I +       +Q +T+ G  + +VT ++  +  +   
Sbjct: 889  -KMFVAKQYLTIFKLSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLDGVI 945

Query: 1032 FP 1033
            FP
Sbjct: 946  FP 947


>gi|89069703|ref|ZP_01157040.1| DNA polymerase III subunit alpha [Oceanicola granulosus HTCC2516]
 gi|89044783|gb|EAR50889.1| DNA polymerase III subunit alpha [Oceanicola granulosus HTCC2516]
          Length = 1110

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 252/1054 (23%), Positives = 452/1054 (42%), Gaps = 87/1054 (8%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             ++P FV L + + +S L GA    N   +       AI + D N     +    +A   
Sbjct: 23   PRAP-FVELGLATCFSFLRGASDATNFALEAHRQGYDAIGVADLNTFAGVVRLHIEAKVT 81

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-- 123
             ++P+IGC+L +   +                  +        Y RL  L+S+  + D  
Sbjct: 82   RLRPVIGCRLALLSGEVF----------------LAYPRDRAAYGRLSRLLSKGKMHDSE 125

Query: 124  ---QGKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
               Q K    + L+ L     EG  LI++       ++RA           RL T   + 
Sbjct: 126  GNWQKKGVCDLTLADLAA-HAEGVQLILVPPEDLDALERAL-----PGLLTRLPTLGHIA 179

Query: 179  GDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS- 237
               LY      RG DR R +++  LA  H L ++ATN+ L+         DV+  +    
Sbjct: 180  ASHLY------RGDDRARINRLDALAVRHGLQILATNDVLYHERARRPLQDVMSCIREGV 233

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            T+     R     + +LK+ +EM  +F++ P A+     +A  C F L+  A   PR + 
Sbjct: 234  TLAEAGFRLEQNAERHLKSPAEMARLFNEWPHAIAAARAVADSCRFDLEELAYEYPREMI 293

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                  +   +  L     AG   R   G        +     L+ EL +I ++  + YF
Sbjct: 294  P----TETTPQAWLEELTWAGAAERYPDG------IPEATVAVLNKELAMIEKLDIARYF 343

Query: 358  LIVADFIQWAKK--NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            L + D +++A++      +  GRGS A S   Y L IT +DP +  LLFERF++ +R   
Sbjct: 344  LTINDIVRFAREGVAKPILCQGRGSAANSAVCYVLGITAVDPAQHQLLFERFISEERKEP 403

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DF  +RR+EVI+++  KYG +R     T    + ++A+R+VG+ + +       L
Sbjct: 404  PDIDVDFEHERREEVIQHIYQKYGRDRAGLCATVIHYRPRSAIREVGKVMGLSEDVTGAL 463

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             K I       V  + + +        L+DP + + + ++++L G+ RH S H  G ++ 
Sbjct: 464  AKTIWGSWGTDVEARHVGE----AGLELSDPVLRKTILLARQLIGMPRHLSQHVGGFILT 519

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594
            +RPL++ VP+      D    +++   I+  G++K D L L  LT ++K  D +      
Sbjct: 520  ERPLTETVPIGNGAMPDRSFIEWDKDDIDALGILKVDILALGMLTCIRKCFDLIEAHYGQ 579

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               L+ IP +D   Y +L    ++G+FQ+ES      L  ++P    D++  V++ RPGP
Sbjct: 580  SWTLASIPQEDSRVYDMLCKGDSIGVFQVESRAQMNMLPRLRPREFYDLVIEVAIVRPGP 639

Query: 655  IDNIVVYN--NRKNGKEKIVSIHP-------LIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            I   +V+    R++G+E +    P        +  +L  T GV I+QEQ M+IA   + +
Sbjct: 640  IQGDMVHPYLRRRSGEEAVDYPAPAPPHDPQELKNILGRTLGVPIFQEQAMKIAIDAARF 699

Query: 706  SLSEADVLRRAMGKKI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            S +EA+ LR+AM     K ++   +++ +    + G  +  A   F+ +  F +YGF +S
Sbjct: 700  SPAEANELRKAMATFRSKGQIGLLEDKMVGRMVERGYEEDFARRCFDQIKGFGEYGFPES 759

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAA++A++ Y ++W+K H+P  F AA +  +        +  +DA++  +++  P VN  
Sbjct: 760  HAASFALLVYVSSWLKCHFPDAFCAALLNSQPMGFYAPAQIVRDAQEHGVEVRAPDVNYS 819

Query: 825  CVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
              D  +         +   L  I G+    A  ++ A  D P+  L+    R     L +
Sbjct: 820  EWDNSLEPTYAGYFAVRLGLRQIGGLREDMAARLVAAR-DAPYRDLKQLQERA---GLTQ 875

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
             V+  L  A A+      R Q L     ++                +F   +    ++  
Sbjct: 876  PVIRRLAEADAMRSMFIDRRQALWEAKALRDAPD----------LPLFRQVRDEGEERPV 925

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
                       +   + + L      HP+   +  L +                 ++LA 
Sbjct: 926  --GLPAMPVCEQVVADYQTLRLSLKRHPMAFLRKSLARQRYTPSSALEGMNNWQRLKLAG 983

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +V+ +Q+  +  G  + ++T  +         +P
Sbjct: 984  LVLIRQKPGSANG--VCFITLEDEFGSANLVVWP 1015


>gi|284991707|ref|YP_003410261.1| DNA polymerase III subunit alpha [Geodermatophilus obscurus DSM
            43160]
 gi|284064952|gb|ADB75890.1| DNA polymerase III, alpha subunit [Geodermatophilus obscurus DSM
            43160]
          Length = 1268

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 300/1145 (26%), Positives = 499/1145 (43%), Gaps = 137/1145 (11%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            ++  FVHL V S YS+  GA    +++++ A     A+A+TD + L+ A++F+    AA 
Sbjct: 2    RADPFVHLHVASGYSMQYGANHPADLVERAAEHGMRALALTDRDGLYGAVKFALACRAAD 61

Query: 67   IQPIIGCQLDIDMQ-------------------------------------DNLKMTNQG 89
            ++P+ G  L +                                                G
Sbjct: 62   VRPLFGVDLAVTPSVDTTVPPALAPVVGGAHSAQRARSRRPGAPDDAPGRAGRRSPARGG 121

Query: 90   KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG 149
             +  P +P +  L     G++ L  L +  +L    +      L+ L      GL+ L G
Sbjct: 122  ASVDPRLPRVTFLARDGAGWRSLCRLTTATHLRG-TRGEPVSSLA-LAAEHAPGLVALLG 179

Query: 150  GSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTH 207
                P+ RA     + VA  RL  ++ +FG   L + +  HRG  DR R   +++ A   
Sbjct: 180  -PDSPVGRALAAGRADVASARLAAWRAVFGPGSLVLEVVHHRGRGDRSRAQALLRFAAAE 238

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
             +P V TN   ++   D    DVL A      +  +   R T + +LK+  EM  +  DL
Sbjct: 239  GVPAVLTNAVRYVDALDAPTADVLDAARRLVPLDARHVDRRTAEGHLKSGKEMAEVAEDL 298

Query: 268  PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG--------L 319
                 +   + +      ++                 +  E E+                
Sbjct: 299  --VGPDRDAVLQLLERTARLAEQCAVDVRADLGVGSVRYPELEVVTTPAEQGMGPSAVLR 356

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                A           +  +RLD EL VI  + +  YFL VAD +   K   +     RG
Sbjct: 357  ARCEAGLGRRGMPRTAEVARRLDDELEVIDVLGYPSYFLTVADVVDLIKSLRVRAA-ARG 415

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            SGAGS+  Y L I+D+DP+R+ LL ERFL+P R  +PD DID    RR EV   V +++G
Sbjct: 416  SGAGSLVTYLLGISDVDPIRYGLLMERFLSPLRHQLPDVDIDVESARRMEVYDAVLDRFG 475

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
              RV+ I    + + + A+RDVG AL +P ++VD + K  P+  A+ V   A+ D    R
Sbjct: 476  AHRVSCISMMDTYRVRHAIRDVGAALGLPPAEVDAVAKAFPHIRANQV-HAALKDLPELR 534

Query: 500  ------EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                          +D L ++  +L+GL RH + H  G+++ D  L    P+        
Sbjct: 535  ASRLGSRRGGGTGDLDLLFDLVARLDGLPRHIALHPCGVLLSDATLLDRTPVEN-SYLGY 593

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLL 612
            P++QF+   +E+ GL+K D LG++  + +  +LD +A+  G  VD+  +P DD  T+ L+
Sbjct: 594  PMSQFDKDDVEELGLLKLDLLGIRMQSAIAHALDEVARVDGETVDIDAVPRDDPTTFELI 653

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN--RKNGKEK 670
             +  TLG+FQ+ES G R+ +    P+  EDI+  +SL+RPGP+ + +V      +NG  +
Sbjct: 654  RSTRTLGMFQIESPGQRELVGKFGPETFEDIVIDISLFRPGPVKSDMVTPFLLARNGWRE 713

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             V  HP + P L++T GV+++ EQV+QI   ++G  L++AD  RRA+G   +E   + + 
Sbjct: 714  PVYPHPDLAPYLEQTAGVVVFHEQVLQIVAQMTGCDLAQADEARRALGD--RELHPEVRA 771

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+  A +      +   ++++L  F  +GF K+HAAA+A+ +YQ+AW+KTH+P  FLA 
Sbjct: 772  WFVPEAVQR-YPVEVVEQVWQVLVAFGSFGFCKAHAAAFALPTYQSAWLKTHHPAAFLAG 830

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR---------------- 834
             +T +     K      DAR F ++++   VN     ++V                    
Sbjct: 831  VLTHDPGMYPKRLIL-DDARNFGVRVLGLDVNASAGTYRVERLEADPDAGPEVETAGGWA 889

Query: 835  ----------------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
                            I  SL+ +KG+       ++   A +P+ SL DF  R     ++
Sbjct: 890  RPSWMPVAMPDPSRYGIRLSLSDVKGICAEEVERVV---AGQPYRSLTDFWHRAS---VS 943

Query: 879  RRVLESLVFAGALDCFGY------------------SRMQLLQSLDNIQKYAQWVEKNRT 920
            R V+E LV AG  D                      +R  LL  +  + ++++   K  T
Sbjct: 944  RPVVERLVLAGGFDSLYGFGVRDREAGRPTRGRRQVTRRDLLLQIGELDRWSRSGAKAAT 1003

Query: 921  NKHENI--------FAHEKGTFSDKITL-----EKFSVENSSVRFENEQRVLGFYFSGHP 967
                ++             G  +++  L             +     E  VLG   S H 
Sbjct: 1004 TGQLSLDLMGLEMEGTELPGEEAEEPGLGWAEGSGLPELTDAELVRAELEVLGLDASRHV 1063

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            +D Y+P L  +G     E + +  G  + +A + V+ Q    R G R+ +VT  +     
Sbjct: 1064 VDFYRPFLAAIGAVLAGELLGSRSGAEVLVAGVKVATQTPPIRSGRRVVFVTLDDGTGCT 1123

Query: 1028 EANFF 1032
            ++ FF
Sbjct: 1124 DSTFF 1128


>gi|258512318|ref|YP_003185752.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257479044|gb|ACV59363.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 992

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 362/938 (38%), Positives = 544/938 (57%), Gaps = 40/938 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            FVHL VHS++S  E  L + +I+    A + PA+AITDTN ++ AL F + A A GI P
Sbjct: 2   DFVHLHVHSAFSFRESLLRVEDIVRAAKACEMPAVAITDTNAMYGALSFYRLARAEGISP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I+G Q+ + + +      +      T   +V+L    EGY+RL  L +            
Sbjct: 62  ILGMQVSLAVGEEEAAPGRAAEWLDT---VVVLAMGMEGYRRLTRLATSARWKRP---VP 115

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            + L  L E  ++GL++L GG    +        ++ AE+RLL         +L+V +Q 
Sbjct: 116 HVTLRELAE-SSDGLVVLCGGPESRLFDFLARGEAEAAERRLLQVAGAVPVGQLFVEVQD 174

Query: 189 HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H    +R     ++QLA  +++PLVAT++  +L+ ED   H     +A     +      
Sbjct: 175 HGLRREREGLPSLIQLAKRYDVPLVATHDVRYLAREDASWHRAYAQLAR----ADAAERF 230

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            T + +   ++EM   F++LPEAL  T EIA  C+  L +H   +PR+  K+        
Sbjct: 231 ATDEFHFATKAEMADRFANLPEALGRTAEIAEMCALDLPLHQVRMPRYATKDGRP----A 286

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
           +  L        E   A  A   G  + +  +RL+ EL+VI RM ++ YFL+VADFI+ A
Sbjct: 287 DEVL-------REAARAGAARRYGALSPEVEERLERELDVICRMGYADYFLVVADFIRHA 339

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  I  GPGRGS AGS+ AYAL ITD+DP+R  LLFERFLNP R+S+PD D DF  +RR
Sbjct: 340 HQQGISTGPGRGSAAGSLVAYALRITDVDPIRHKLLFERFLNPARVSLPDIDTDFEFERR 399

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            EVIRYV  KYG +RVAQI TFG+LQA+AALRD GR      + VDRL KL+P    H  
Sbjct: 400 GEVIRYVIEKYGRDRVAQIGTFGTLQARAALRDAGRMTGADPALVDRLAKLVPGV-VHAS 458

Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              A  + + FRE     P   RL E ++++E L  H S HAAG++I   P++  +P+  
Sbjct: 459 LDGAYQESAAFRELVDGSPDARRLFEAAKRIEDLPHHTSIHAAGVIISPEPIADWIPLDL 518

Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
               D PVT + M+ +E  G +K DFLGLKTLTL+ + LD + +R  V +D   +   D 
Sbjct: 519 AA-DDTPVTAYPMEDVEALGFVKMDFLGLKTLTLIDRCLDSIRKRTGVTIDWRQVDEGDK 577

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            TY LLT   T G+FQLES+GMR+ L  ++P  ++D+IA++SL RPGP++NI  + + K+
Sbjct: 578 ATYALLTRADTNGVFQLESAGMRRVLRELRPTSLDDVIAVISLNRPGPMENIPAFCDAKH 637

Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
           G+  +   HP ++P+L +T GVI+YQEQ+MQIA  ++G+SL+EAD+LRRA+ KK +E +D
Sbjct: 638 GRRPVTYPHPDLEPILADTYGVIVYQEQIMQIASRMAGFSLAEADLLRRAVSKKKREILD 697

Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
           +++ RF+ G  + G S+  A  +++L+ +FADYGFN+SHAAAYAV++++TA+++ H+  +
Sbjct: 698 EERARFVDGCVRRGYSEETAREVYDLIVRFADYGFNRSHAAAYAVLAFRTAYLRAHFLPD 757

Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGV 845
           FLAA +TL M   +KI+ + QDAR+  IQ+ PPSV      + V  D  +   L +I+ V
Sbjct: 758 FLAALLTLSMGAPDKIRLYEQDARRHGIQVRPPSVLRSERGYTVEEDGSLRAGLISIRNV 817

Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS------RM 899
           G     HI+   ++KPF SL DF  R++ + +NR+ L+SL  AGALD F         R 
Sbjct: 818 GEAAVDHILSLRSEKPFASLVDFLRRIEPRIVNRKALDSLFAAGALDEFFPENASRDVRR 877

Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
           Q+ +  + + +  +  +        ++F   +   + +
Sbjct: 878 QMYE--EALLRAEESRQWAA----LDLFVEAEAKSASE 909


>gi|283770780|ref|ZP_06343672.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            H19]
 gi|283460927|gb|EFC08017.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            H19]
          Length = 1065

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 315/1022 (30%), Positives = 508/1022 (49%), Gaps = 81/1022 (7%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G 
Sbjct: 5    LNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFGM 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + +    N   T             V+L     G + L +L S++ +         +  
Sbjct: 65   TIYVTNGLNTIET-------------VVLAKDNNGLKDLYQLSSKIKINSMEN----VSF 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              LQ+  +  +I              F N +      +  F     +  Y+    HR   
Sbjct: 108  ELLQQFSSNLII-------------IFKNVADEHRDIVQVFDSH--EDTYL---DHRSV- 148

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +VQ      +  V   N  + + +D +    L A+  +T +             
Sbjct: 149  ------LVQ-----GIKHVWIQNVCYQTRQDADTISALAAIRDNTKLD-----------L 186

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            + ++ +  + F    E  +  +         +            +      +   +E   
Sbjct: 187  IHDQEDFGAHFLTEKEIKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQYQTPNDESAK 246

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            K +      L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ 
Sbjct: 247  KYLW---RVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVM 303

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ VI+Y
Sbjct: 304  VGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQY 363

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            VQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +      
Sbjct: 364  VQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQI 423

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            DD  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +      
Sbjct: 424  DD--FKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG-- 479

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612
             +TQ+ M   E  GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFD+ + + LL
Sbjct: 480  LLTQWTMTEAEHIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDNQKVFELL 539

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+ 
Sbjct: 540  SQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQ 599

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ F
Sbjct: 600  YLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHF 659

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  +
Sbjct: 660  IEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANIL 719

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + + 
Sbjct: 720  SNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKV 779

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +   
Sbjct: 780  IVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDG 839

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
               +E++       +F       + K   E       ++  + E+  LGFY S HP+D  
Sbjct: 840  DLNIEQD-----GFLFD----ILTPKQMYEDKEELPDALISQYEKEYLGFYVSEHPVD-- 888

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
              +          +         I +       +Q +T+ G  + +VT ++  +  +   
Sbjct: 889  -KMFVAKQYLTIFKLSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLDGVI 945

Query: 1032 FP 1033
            FP
Sbjct: 946  FP 947


>gi|222110960|ref|YP_002553224.1| DNA polymerase iii subunit alpha [Acidovorax ebreus TPSY]
 gi|221730404|gb|ACM33224.1| DNA polymerase III, alpha subunit [Acidovorax ebreus TPSY]
          Length = 1061

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 261/1069 (24%), Positives = 433/1069 (40%), Gaps = 118/1069 (11%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   S++S   GA     ++ +       A+A+TD  ++   +     A A G+ 
Sbjct: 4    PAYAELHALSNFSFQRGASHPQELVQRAHKLGYSALALTDECSVAGVVRAHGAAQALGLP 63

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +      D                 IV L    +G+  L E ++       GK  
Sbjct: 64   LIVGSEF--CWGDV---------------RIVALARDVQGWGDLCEFITAARQR-AGKGG 105

Query: 129  VRICL----------SWLQEIGTE------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             R+              L     E       LI ++                        
Sbjct: 106  YRVDAQSPWALLQGCEVLLAPRREAFVDASDLIAVSACLESV------------------ 147

Query: 173  TFKKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
              + LF    ++ ++ H   D       + Q      LPLVA  +    S       DVL
Sbjct: 148  --RGLFASNCWLAVELHTAPDDGLWLRTLTQAGAQLGLPLVAAGDVHMHSRAAKPLQDVL 205

Query: 232  MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
             AV     V+                   ++     P  L  T+++A RC+F L      
Sbjct: 206  TAVRLGRSVAACGFALQPHAEKRLRPRSRLAGL-YPPALLAATLQVAARCTFSLNEIKYR 264

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
             P    +      +     L      G  VR   G        +    +++ EL +IA  
Sbjct: 265  YPLETVQPGMTASQT----LACLTWEGARVRYPDGV------PEAVVTQVEKELALIAEC 314

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             +  YFL V D +++A+   I    GRGS A S   Y L IT +DP +  LLFERF++ +
Sbjct: 315  GYEMYFLTVHDIVRYARSQGIL-CQGRGSAANSAVCYCLGITAVDPQKTRLLFERFISRE 373

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD D+DF  DRR+ VI+Y+ +KYG +R A      S + ++ALRDVG+AL +  + 
Sbjct: 374  RSEPPDIDVDFEHDRRETVIQYIYDKYGRDRSAITAVVISYRTRSALRDVGKALGVAPAL 433

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
            VD   K          +   +A   R  E   A  +   L +++++L G  RH S H  G
Sbjct: 434  VDAFAKEHHWFDDVLATEHLLALAERLGEPLGAHTAALWL-QLARQLRGFPRHLSQHVGG 492

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             V+ +  L++LVP+         + Q++   ++  GL+K D L L  L+ L++ L+  A 
Sbjct: 493  FVLTEGKLTRLVPVEPAAMDGRSIIQWDKDDLDAMGLLKVDVLALGMLSALRRCLEMRAA 552

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
             RG   DL+ IP +D  TY ++    T+G+FQ+ES      L  +QP    D++  V++ 
Sbjct: 553  LRGESWDLADIPPEDPATYDMVCRADTVGVFQIESRAQMSMLPRLQPREFYDLVVQVAIV 612

Query: 651  RPGPIDNIVVYNN-------------RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
            RPGPI   +V+               ++     I    P +   L+ T GV I+QEQVMQ
Sbjct: 613  RPGPIQGGMVHPYLQARERRRQWQRTKREEPFPIEY--PRLGNALRRTLGVPIFQEQVMQ 670

Query: 698  IAQLLSGYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            IA   +G+S  +AD LRR+M     K E+ + ++ F  G   NG     A  +F+ +  F
Sbjct: 671  IAIDGAGFSAGQADELRRSMAAWRRKGEVHRFEKPFKDGLLANGYPPEFADRLFQQILGF 730

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
             +YGF +SHA ++A+++Y ++W+K H P  FLAA +  +        +  QDAR+  + +
Sbjct: 731  GEYGFPESHAYSFALLAYASSWLKRHEPACFLAALLNAQPLGFYTPAQLVQDARRHGVCV 790

Query: 817  MPPSVNTPCVDFKVGD------------NRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
            +P  V T  VD  + +              +   L  + G+G   A  +++A    PF +
Sbjct: 791  LPIDVATSDVDCTLEEPLAPVAGVSLAQPAVRLGLRLVAGLGAAAAERLVQARGSGPFVN 850

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
             ED   R    +L+R+ L++L  A AL      R Q +       +    ++        
Sbjct: 851  SEDLALRA---RLDRQDLQALAAADALRALAGHRRQQMWDAAAQLRAPPLLQ-------- 899

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                             +            +    G     HPL + +  L++  +   +
Sbjct: 900  --------DAPVHEAAPQLPAAPEGEDILWDYAATGLTLRRHPLALLREKLQRWRLATAQ 951

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  +   G  +R   +V  +Q+  +  G+   +VT  +         +P
Sbjct: 952  QLQSAPHGRRVRACGIVTVRQRPGSANGTM--FVTLEDETGSVNVIVWP 998


>gi|323340850|ref|ZP_08081101.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus ruminis
            ATCC 25644]
 gi|323091701|gb|EFZ34322.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus ruminis
            ATCC 25644]
          Length = 1120

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 328/1056 (31%), Positives = 532/1056 (50%), Gaps = 86/1056 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ-P 69
            F  LQV S+YSLL+  L +++ ++  +     A+ +TD + L+ A EF +     GI+ P
Sbjct: 2    FAPLQVKSAYSLLQSPLKISDYVEAASKMGYEALCLTDVDVLYGAFEFFEACRKYGIKKP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD--QGKQ 127
            +IG +L++      +             S++LL   A GY+ L+++ S     +      
Sbjct: 62   VIGIELNMQGDGEEEPI-----------SLLLLAKNAAGYRNLVKISSNKLSENSLDPHD 110

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPI---DRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            + + C   +++   +G+ ++    S  +    + F    S  A+             LY+
Sbjct: 111  NPQTC-DDIKDCL-DGVAVIVSPESIKVASSPKFFKKLQSNGAK-------------LYL 155

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
               +   + R       ++A T ++P +A +   +L  +DY    VL A+     ++   
Sbjct: 156  G--KGPQFSRELLLDAYRIAETLKIPQIALSKVEYLKPDDYFGQVVLQAIDADERINFDQ 213

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R   +      +  ++    + +      T ++     F L      LP +  ++    +
Sbjct: 214  RMSGSEYLKSPSEYQIDYKNAGMETEFGQTEKLLSEIDFWLTPSEISLPHYKFQKGV-AK 272

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                + L+     G++    +           Y++RLD EL VI  M F  YFLIV+   
Sbjct: 273  VSAHDYLKRLCADGIKRCFRENPDKI----DIYQKRLDHELKVIHEMGFEDYFLIVSGIT 328

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            Q+A+   I VGPGRGS AGS+ +Y L ITD+DP++++LLFERFLN +R  MPD D+D   
Sbjct: 329  QYARSVGIIVGPGRGSAAGSLVSYVLRITDVDPIKYNLLFERFLNEERHEMPDIDLDIPD 388

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            ++RD +I+YV + YG   +AQIITF +  AK ALRD  R   +  ++ D   K IP    
Sbjct: 389  NKRDRIIKYVYDTYGSRHMAQIITFDTFGAKQALRDGCRIFGLTQAETDAWSKAIPFGDK 448

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +      +  R R         +RL E +QKLEGL RH STHAAGIV+ D+ L ++VP
Sbjct: 449  MTLERAR-RESQRIRNLIADSKRNERLFETAQKLEGLPRHFSTHAAGIVLSDQNLDEVVP 507

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPF 603
            +         +TQF+ K +EKAGL+K D LGLK L +L  + D + Q      DL  IP 
Sbjct: 508  VQ-IGNDGYLMTQFSKKPVEKAGLLKIDLLGLKNLRILNTAKDLVNQNKASKLDLEQIPL 566

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  T  L     T GIFQ +S G+RQA+  ++P+  ED++AL +LYRPGPI NI  +  
Sbjct: 567  DDKATLELFYNAKTEGIFQFDSYGIRQAMLKIRPENFEDVVALNALYRPGPIRNIDEFTA 626

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R++G++ +     +++P+L  T G+I+YQEQ MQ++  + G++L EAD+LR+A+ KK  E
Sbjct: 627  RRHGRKTVSYPAKVLEPILNSTYGIIVYQEQAMQVSSKMGGFTLGEADILRQAISKKEHE 686

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +++ + +F++GA K G SK  A+ +++ + +F +YGFN+SHA AY+ +++Q A++K HY
Sbjct: 687  TIERMRVKFVAGAQKKGFSKEDALRVYDYIERFGEYGFNRSHAVAYSKMAFQMAYLKAHY 746

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P EF  A ++  + NVEK + F   A++  I+I+ P +N    DF++ D  I +   ++K
Sbjct: 747  PAEFYCALLSTVIGNVEKTQSFLAAAKKRKIKILAPDINKSSYDFRISDGGIMFGFLSVK 806

Query: 844  GVGTTTARHIMEASADK---PFDSLEDFCSRVDSKKL----------NRR---------V 881
            G+     R I+         PF SL+DF +R+  + L           +R         +
Sbjct: 807  GIRFDFIRQILAERHAGGYRPFKSLDDFMNRMVERALVDKHDHDGDAKKREKIAKSYRPI 866

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            +E+L++ GA D     R QLL  LD + KY Q          E++F           + +
Sbjct: 867  VETLIYVGAFDSLEADRSQLLNRLDVLVKYDQLSM--SVPLLESLF---------VPSKK 915

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                     R E E+  LG Y S HPLD Y    + +G       V   +       A+V
Sbjct: 916  NVRKLTLDERLEKEKERLGVYLSAHPLDKYSAFAQGIGASSLASLVPDQQ-------AIV 968

Query: 1002 VSK----QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +    ++ KT+KG  + +V+  +   E EA FFP
Sbjct: 969  LVRIKEIKKIKTKKGDEMAFVSCIDQTGEMEATFFP 1004


>gi|222087893|ref|YP_002546431.1| DNA polymerase III alpha subunit protein [Agrobacterium radiobacter
            K84]
 gi|221725341|gb|ACM28497.1| DNA polymerase III alpha subunit protein [Agrobacterium radiobacter
            K84]
          Length = 1133

 Score =  535 bits (1379), Expect = e-149,   Method: Composition-based stats.
 Identities = 245/1072 (22%), Positives = 434/1072 (40%), Gaps = 94/1072 (8%)

Query: 5    LEKSPSFV------HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
            +   PSF        +   S++S LEGA     ++          + + D N++   ++ 
Sbjct: 1    MSGHPSFSGSAPFFEIGARSNFSFLEGASHPEEMVLGAKIAGLAGLGLADRNSVAGVVKA 60

Query: 59   SQKACAAG--IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
               A   G   QP  G +L                     P I+      +G+  L  L+
Sbjct: 61   HVIAKQHGYRFQP--GARLVFSDG---------------TPDILAFPQNRQGWAHLCRLL 103

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S   L  + K    +  S L E G E ++ L   ++               E+ L     
Sbjct: 104  SAGNLRGE-KGVCILNESNLLEWGDEMMLALVPDAASVET----PEGQAKLEECLARLWM 158

Query: 177  LFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             FG +L++ L   + G DR   + +  LA  + + L+A+N  L+ + E     D+++++ 
Sbjct: 159  RFGRKLHMVLSPAYDGRDRLVFATLSILALRNGVRLIASNEPLYHATERKPLADIVVSIR 218

Query: 236  HSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                +++         + YLK  +EM  +F D P+A+ NT +   R SF L       P 
Sbjct: 219  EHVPIAEAGFKLAANAERYLKGGAEMARLFRDYPKAIANTQKFFNRLSFSLDELKHNYPD 278

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                      +     L   A  G + R            +   +++D+EL +I   ++ 
Sbjct: 279  ESVP-----GETVSETLERLAREGAKRRYPD------KIPEKVAKQIDYELALIRERQYE 327

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFL V   +++A+  NI    GRGS A S   Y L IT+++P   +LLFERF++ +R  
Sbjct: 328  PYFLTVHRIMEYARSRNIL-CQGRGSAANSTVCYCLGITEVNPEITTLLFERFISTEREE 386

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF  ++RD+VI+++ + Y  E         S +A++A R+V +A  +       
Sbjct: 387  PPDIDVDFEHEKRDQVIQFIYDHYSKEHAGLTAAVTSYRARSAGREVAKAFGLSEDVQSA 446

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            L   +       +S      ++R     L D +  R+L  +  L G  RH + H  G VI
Sbjct: 447  LASGVWGWSTEELS----EREARLAGLDLKDKTTKRVLSYASTLMGFPRHLTQHVGGFVI 502

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
                L ++VP+      D  + ++N   ++   ++K D L L  LT L K+ D L     
Sbjct: 503  TRDRLDEVVPIMHTAMKDRYMIEWNKDDLDSLNILKIDVLALGMLTCLAKAFDLLLLHYD 562

Query: 595  KVDLSLIP-----FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                          D    Y+++    T+G+FQ+ES      L  +QP    D++  V++
Sbjct: 563  VKKQLADLGSGEYPDRIPVYNMICRADTIGVFQIESRAQMSMLPRLQPRKFYDLVIEVAI 622

Query: 650  YRPGPIDNIVVYNNRKNGKEKI-----VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
             RPGPI   +V+   K  +            P +  +LK T GV ++QEQ MQIA   +G
Sbjct: 623  VRPGPIQGNMVHPYLKRREADRAGKDLDYPSPELKEVLKRTLGVPLFQEQAMQIAITAAG 682

Query: 705  YSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            ++ +EAD LRRAM    +   +   +++ + G       +  A N FE +  F +YGF +
Sbjct: 683  FTPAEADKLRRAMATFKRTGTIHTFEKKMVEGMVARNYDREFAKNCFEQIKGFGEYGFPE 742

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAA++A++ Y ++W+KT+YP  F AA +  +        +  +DAR+  +++ P  +N 
Sbjct: 743  SHAASFALLVYASSWIKTYYPDVFCAAMLNSQPMGFYAPAQLVRDAREHGVEVRPVDINR 802

Query: 824  PCVDFKVGD----------------------NRIYYSLAAIKGVGTTTARHIMEASADKP 861
               D  + +                        +      +KG+  T    ++       
Sbjct: 803  SEWDSLLEEARFDRNAIEPRHASMREVIRTNRAVRLGFRQVKGLSETDMGELVARRGSG- 861

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + S+ D   R     L +  +E L  A A    G  R + L ++  +   +   +     
Sbjct: 862  YASVRDLWLR---SGLAKSAIERLADADAFRSIGLERREALWAVRALDAQSAAEK----- 913

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
                +F                       +   + R L      HP+   +    +MGI 
Sbjct: 914  --LPLFDLADRADLQVEADVSLPAMLPGEQVIEDYRYLSLSLKAHPVSFLRADFARMGIV 971

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +      G  + +A +V+ +Q+  +  G  + ++T  +      A  +P
Sbjct: 972  QNRDLPTIANGRMVTVAGLVLVRQRPGSANG--VIFMTLEDETGVANAIVWP 1021


>gi|256850997|ref|ZP_05556386.1| DNA polymerase III alpha-chain [Lactobacillus jensenii 27-2-CHN]
 gi|260661209|ref|ZP_05862123.1| DNA polymerase III alpha-chain [Lactobacillus jensenii 115-3-CHN]
 gi|256616059|gb|EEU21247.1| DNA polymerase III alpha-chain [Lactobacillus jensenii 27-2-CHN]
 gi|260548146|gb|EEX24122.1| DNA polymerase III alpha-chain [Lactobacillus jensenii 115-3-CHN]
          Length = 1039

 Score =  535 bits (1379), Expect = e-149,   Method: Composition-based stats.
 Identities = 317/1026 (30%), Positives = 524/1026 (51%), Gaps = 44/1026 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS+SLL+  + +++++         ++A+TD N  +  ++F   A  A ++P++G 
Sbjct: 6    LQTLSSFSLLKSPILIDDLVKDAVDKGYSSLALTDINVTYGLVDFYLAAQKANLKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
             + ++          G         ++ +    +GY+ ++ L S + L  D G +   + 
Sbjct: 66   TIRLN----------GIVDQAHRYDLISIAKNNQGYKNILRLSSAINLKTDNGDERKVLT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
            L  L +  ++ + ++    +  + R    N+ ++    +   +K+      LY+ +  + 
Sbjct: 116  LKQLAKYLSDQVFIVPANITSEL-RYLAENNEKLGSDFIRELQKIIPSSSDLYLGV--YA 172

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD---RPR 247
            G ++        +A    LPL AT +  +L   D+     L A+     +         +
Sbjct: 173  GKNQPYIDYAKSMAKQFNLPLAATEDVQYLQASDHFLVKTLRAIEQGQKLVDTSSLALQK 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +                 +  AL N  +IA  C   +    P LP++ +    D +K  
Sbjct: 233  GSHYLRTSGELVSAYNECGILSALHNAAKIADECKASVTFTQPELPKYKQSFAPDSKK-- 290

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     GL  R     I      + Y++RLD+EL +I +M F  YFLIV D I +A
Sbjct: 291  --YLRQLVQKGLARRFNGQTI-----PEIYQKRLDYELKIIDQMGFDDYFLIVWDVINYA 343

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
               +I  GPGRGS AGS+ AY+L IT++DP++++LLFERFLNP R  MPD D+D   +RR
Sbjct: 344  HSVDITTGPGRGSAAGSLVAYSLAITEVDPIKYNLLFERFLNPARAQMPDIDLDIPDNRR 403

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+I+Y+  KYG +  AQI+TFG+L AK ALRD  R   +   Q  +    IP   +   
Sbjct: 404  DEIIKYMFEKYGMDHAAQILTFGTLAAKQALRDCARVFGLTTIQASKFTHAIPFSKSKIT 463

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              QA  +    +    A      L + + +LEG+ RHAS HAAG+VI D+ ++Q+  +  
Sbjct: 464  LAQAYQESKALQLLVNASELNKLLFKTAMRLEGIPRHASIHAAGLVISDKSIAQIAGLQ- 522

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
                 +PVTQ     +E+ GL+K DFLGL+ LT+L  +++ LA+ G+K+D   IP DD +
Sbjct: 523  AGTLGIPVTQQTKAHVEELGLLKIDFLGLRNLTILGDTVELLAKDGIKLDPKRIPLDDVK 582

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T  +FQ ES G++  L  + PD  ED++A+ +LYRPGPI NI  + NRK G
Sbjct: 583  TLQLFQRGKTDAVFQFESQGIKNVLRRLHPDSFEDVVAVNALYRPGPIQNIDHFINRKQG 642

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KE I      +  +L+ T G+++YQEQVMQ AQ+++G+SL EAD+LRRAM KK ++ +D+
Sbjct: 643  KEPITYPDSSLAKLLQPTYGILVYQEQVMQTAQIMAGFSLGEADLLRRAMSKKKQDLIDQ 702

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++E+FI+GA KNG  +  A  ++  + +FA+YGFN+SHA AY+ I++  A++K HYP  F
Sbjct: 703  EREKFIAGAVKNGHPQATASKVYAYIEQFANYGFNRSHAVAYSKIAFWLAYLKVHYPAAF 762

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A +     N  K  ++   A++  ++I+ P +N    D+ + + +I   L AIKG+  
Sbjct: 763  FTALLNSVSANRVKAGEYITQAQEAGVKILAPDINNSQTDYYLVNGQIQVGLKAIKGLRV 822

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               R+I     +  F SL DF  ++D K L+ + + +++ AG  D    +R  LL +   
Sbjct: 823  DFLRNIAGLPKN--FTSLADFLRKIDVKFLSEQAIAAMIKAGCFDKIDENRKMLLANCKE 880

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            I +  ++  +N T     +     G     I LE+    NS+ +   E+ VLGF  +  P
Sbjct: 881  IVENIKFTGQNET-----LSEGLGG-----IRLEQAPAPNSNEKATMEEEVLGFSTTKTP 930

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            + V +    +   +          G  +     ++  +  +T+KG  + + TF + + E 
Sbjct: 931  ILVVQKYAERFNAQALNSFTVNETGIAV---GKLIKLKLIRTKKGDTMAFSTFRDASSEQ 987

Query: 1028 EANFFP 1033
            E   FP
Sbjct: 988  EITIFP 993


>gi|323442993|gb|EGB00615.1| DNA polymerase III alpha subunit [Staphylococcus aureus O46]
          Length = 1065

 Score =  535 bits (1379), Expect = e-149,   Method: Composition-based stats.
 Identities = 315/1022 (30%), Positives = 507/1022 (49%), Gaps = 81/1022 (7%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L +H++Y LL  +L + + +    ++   A+AITDTN L+    F     A  I+PI G 
Sbjct: 5    LNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPRFYDACIANNIKPIFGM 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + +    N   T             V+L     G + L +L S++ +         +  
Sbjct: 65   TIYVTNGLNTIET-------------VVLAKDNNGLKDLYQLSSKIKMNSIEN----VSF 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              LQ+  +  +I              F N +      +  F     +  Y+    HR   
Sbjct: 108  ELLQQFSSNLII-------------IFKNVADEHRGIVQVFDSH--EDTYL---DHRSV- 148

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +VQ      +  V      + + +D +    L A+  +T +             
Sbjct: 149  ------LVQ-----GIKHVWIQTVCYQTPQDADTISALAAIRDNTKLD-----------L 186

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            + ++ +  + F    E  +  +         +            +      +   +E   
Sbjct: 187  IHDQEDFGAHFLTEKEIKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQYQTPNDESAK 246

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            K +      L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ 
Sbjct: 247  KYLW---RVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVM 303

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ VI+Y
Sbjct: 304  VGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQY 363

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            VQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +      
Sbjct: 364  VQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQI 423

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            DD  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +      
Sbjct: 424  DD--FKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG-- 479

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612
             +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + LL
Sbjct: 480  LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFDLL 539

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+ 
Sbjct: 540  SQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQ 599

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ F
Sbjct: 600  YLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHF 659

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  +
Sbjct: 660  IEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANIL 719

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + + 
Sbjct: 720  SNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSKEGIYLSIGTIKGVGYQSVKV 779

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +   
Sbjct: 780  IVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDG 839

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
               +E++       +F       + K   E       ++  + E+  LGFY S HP+D  
Sbjct: 840  DLNIEQD-----GFLFD----ILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD-- 888

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
              +          +         I +       +Q +T+ G  + +VT ++  +  +   
Sbjct: 889  -KMFVAKQYLTIFKLSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLDGVI 945

Query: 1032 FP 1033
            FP
Sbjct: 946  FP 947


>gi|302333367|gb|ADL23560.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus JKD6159]
          Length = 1065

 Score =  535 bits (1379), Expect = e-149,   Method: Composition-based stats.
 Identities = 316/1022 (30%), Positives = 508/1022 (49%), Gaps = 81/1022 (7%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G 
Sbjct: 5    LNIHTAYDLLNSSLKIEDAVRLAVSENVEALAITDTNVLYGFPKFYDACIANNIKPIFGM 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + +    N   T             V+L     G + L +L S++ +         +  
Sbjct: 65   TIYVTNGLNTIET-------------VVLAKDNNGLKDLYQLSSKIKMNSMEN----VSF 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              LQ+  +  +I              F N +      +  F     +  Y+    HR   
Sbjct: 108  ELLQQFSSNLII-------------IFKNVADEHRDIVQVFDSH--EDTYL---DHRSV- 148

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +VQ      +  V   N  + + +D +    L A+  +T +             
Sbjct: 149  ------LVQ-----GIKHVWIQNVCYQTRQDADTISALAAIRDNTKLD-----------L 186

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            + ++ +  + F    E  +  +         +            +      +   +E   
Sbjct: 187  IHDQEDFGAHFLTEKEIKQLDINQGYLTQVDVIAQKCNAELKYHQSLLPQYQTPNDESAK 246

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            K +      L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ 
Sbjct: 247  KYLW---RVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVM 303

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ VI+Y
Sbjct: 304  VGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQY 363

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            VQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +      
Sbjct: 364  VQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLRITLDEAYQI 423

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            DD  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +      
Sbjct: 424  DD--FKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG-- 479

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612
             +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + LL
Sbjct: 480  LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFDLL 539

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+ 
Sbjct: 540  SQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQ 599

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ F
Sbjct: 600  YLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHF 659

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  +
Sbjct: 660  IEGAKENGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANIL 719

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + + 
Sbjct: 720  SNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKV 779

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +   
Sbjct: 780  IVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDG 839

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
               +E++       +F       + K   E       ++  + E+  LGFY S HP+D  
Sbjct: 840  DLNIEQD-----GFLFD----ILTPKQIYEDKEELPDALISQYEKEYLGFYVSQHPVD-- 888

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                         +         I +       +Q +T+ G  + +VT ++  +  +   
Sbjct: 889  -KKFVAKQYLTIFKLSNAQNNKPILV--QFDKVKQIRTKNGKNMAFVTLNDGIETLDGVI 945

Query: 1032 FP 1033
            FP
Sbjct: 946  FP 947


>gi|86359661|ref|YP_471553.1| DNA polymerase III alpha subunit protein [Rhizobium etli CFN 42]
 gi|86283763|gb|ABC92826.1| DNA polymerase III alpha subunit protein [Rhizobium etli CFN 42]
          Length = 1150

 Score =  535 bits (1379), Expect = e-149,   Method: Composition-based stats.
 Identities = 249/1075 (23%), Positives = 445/1075 (41%), Gaps = 83/1075 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-- 62
            + + P+F  +   +++S LEGA     ++ + A  +   + I D N++   +    +A  
Sbjct: 1    MTE-PAFFEIGARTNFSFLEGASGPEEMVVQAAHLRLGGLGIADRNSVAGVVRAHAQALQ 59

Query: 63   --------CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
                      A  Q   G ++   +                 P I+   S   G+  L  
Sbjct: 60   IEEKYKNRHEADFQTWEGEEI---LDPIRVQPGARLVFSDGTPDILAYPSNRRGWANLCR 116

Query: 115  LVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            L+S   L ++  K +  +  +   E G E ++ +    +  +D           E  L  
Sbjct: 117  LLSAGNLKEEAVKGTCILTETEFMEWGDEMMLAVVPDRT-LVDH---QRGQSALEDYLER 172

Query: 174  FKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            F++ F    ++ L   + G DR   + +  LA  + +PL+ATN  L+   E     DV++
Sbjct: 173  FRRRFRKAFFMALAPAYDGRDRQVFAVLATLAARNRVPLIATNQPLYHHPERRPLSDVVI 232

Query: 233  AVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
            A+     +           + YLK   EMV IF D P A+ENT     R SF L+     
Sbjct: 233  AIREHVQISQAGFLLAPNAERYLKGSREMVRIFRDYPGAIENTQAFFGRLSFSLKELEHN 292

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
                     +D  +  +  L     AG   R  +G            +++D+EL +I   
Sbjct: 293  Y-----PPENDPGETPQETLERLTRAGAIKRYPEGV------PPKVVKQIDYELKLIGDK 341

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             ++ YFL V   IQ A+ +   +  GRGS A SV  Y L IT+++P + +LLF+RF++ D
Sbjct: 342  NYASYFLTVHRIIQHARYDLKVLCQGRGSAANSVICYCLEITEVNPEKSTLLFDRFISMD 401

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD D+DF  DRR+EVI+++   Y  E         + + ++A R+V +A  +    
Sbjct: 402  RDEPPDIDVDFEHDRREEVIQFIYRTYKREHAGLTAGVTTYRTRSAGREVAKAFGLSEDV 461

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
               +  L+       +S      D++     + DP    +L+ + +L G  RH + H  G
Sbjct: 462  QSAISSLVWGWSEDNLS----DRDAKAAGLDVKDPVTQNVLKYASELLGFPRHLTQHVGG 517

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             VI    L ++VP+ +    D  + +++   ++   ++K D L L  LT L+K+   L  
Sbjct: 518  FVITRDRLDEVVPIMKTAMPDRYMIEWDKDDLDNVKILKVDILALGMLTCLRKAFSLLEL 577

Query: 592  RGVKVD------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
                              +    Y ++    TLG+FQ+ES      L  ++P    D++ 
Sbjct: 578  HYDVKKALADLGNREHGEEGRPVYEMMGRADTLGVFQIESRAQMSMLPRLKPKIFYDLVI 637

Query: 646  LVSLYRPGPIDNIVVYN-----NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
             V++ RPGPI   +V+       ++     I      ++ +L+ T GV ++QEQ MQIA 
Sbjct: 638  EVAIVRPGPIQGDMVHPYLKRREQRARNIPIDYPSKELEAVLERTLGVPLFQEQAMQIAI 697

Query: 701  LLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
              +G+  +EAD LRRAM    +   +   ++RFI G          A   F  +  F +Y
Sbjct: 698  TAAGFKPAEADKLRRAMATFKRTGTIGDFEKRFIEGMVSKNYDPEFAKQCFNQIRGFGEY 757

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GF +SHAA++A++ Y ++W+K +YP  F AA +  +        +  +DAR+  ++I+P 
Sbjct: 758  GFPESHAASFALLVYASSWLKAYYPDVFCAAMLNSQPMGFYAPAQLVRDAREHGVKILPV 817

Query: 820  SVNTPCVDFKVGD----------------------NRIYYSLAAIKGVGTTTARHIMEAS 857
             +N    D  + +                      + +      IKG+ +     +++  
Sbjct: 818  DINESDWDCTLEEASFDREAIDFRHGEMGGIIKTRHAVRLGFRQIKGLSSDDMERLVDNR 877

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
                + S+ D   R     L + V+E L  A A      SR + L ++  +       + 
Sbjct: 878  GQG-YGSVRDLWLR---SGLQKSVIERLADADAFRSIHLSRREALWAVRAL-------DV 926

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                +   +F   +          K        +   + R L      HP+   +  LRK
Sbjct: 927  KSAAEELPLFEQVRHLDLQPEPAAKLPDMLPGEQVIEDYRYLSLSLKAHPVSFLREELRK 986

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             GI    + +    G  + +A +V+ +Q+  + KG  + ++T  +      A  +
Sbjct: 987  AGITRNVDLLTVPNGKRVTIAGLVLVRQRPGSAKG--VIFMTLEDETGVANAIVW 1039


>gi|73538350|ref|YP_298717.1| error-prone DNA polymerase [Ralstonia eutropha JMP134]
 gi|72121687|gb|AAZ63873.1| DNA polymerase III, alpha subunit [Ralstonia eutropha JMP134]
          Length = 1111

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 263/1094 (24%), Positives = 457/1094 (41%), Gaps = 106/1094 (9%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            L+ +L   P +  L   S+++ L GA     ++++        IA+TD  ++        
Sbjct: 9    LSAWLPTLPDYAELHCISNFTFLTGASHPVELIERAFQLGYRGIALTDECSVAGTARAHD 68

Query: 61   K---------------------ACAAG--------------IQPIIGCQLDIDMQDNLKM 85
                                  A   G               + +IG +  +        
Sbjct: 69   AIKTLRQRLTDAVKRCEADATEAQDEGELNVLKAHAAAADAFRLLIGSRFSLTAPSGTDE 128

Query: 86   TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ--EIGTEG 143
                         ++L+    EG+  L EL++   +  Q K S  +    L   E   + 
Sbjct: 129  RPP--------LRLILIAQHREGFGNLCELITLGRMRAQ-KGSYLLHPEDLSAPEEEQKH 179

Query: 144  LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHRGYDRYRESQVVQ 202
            L  + G  +  +             ++    ++ FG+R ++ L Q     D    +++  
Sbjct: 180  LRGMPGCLALLVPDYCP--DPAQLLEQAQWCREAFGERAWIALEQLQGHADALHRARLES 237

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
            ++    +PLVA               DVL A+     +  +    + P+     R   V 
Sbjct: 238  VSAQAGVPLVAAGAVTMHVRSRKPLSDVLTAIRLGKPLP-ECGMALAPNAEQHLRMRQVL 296

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
                  EAL  T++IA  C F L       P  +  + +       + LR +  AG  +R
Sbjct: 297  SRLYPREALAQTLKIAGLCDFSLDTLRYEYPEELVPKGE----TPISYLRKEVEAGKRMR 352

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
               G         ++ ++L+ EL +I   ++  +FL V D +++A++  I    GRGS A
Sbjct: 353  FPHGLK------PEWEKQLEGELELIEEKQYEHFFLTVHDIVRFARQEGIL-CQGRGSAA 405

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
             S+  Y L +T++ P + +LLF RFL+ +R   PD D+DF   RR+EVI+Y+  KYG +R
Sbjct: 406  NSLVCYCLYVTEVSPEQANLLFGRFLSRERDEPPDIDVDFEHQRREEVIQYIYRKYGRDR 465

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
             A   +  + ++++ALRDVGRAL +  S V+++ K      +    L  I          
Sbjct: 466  TALAASLITYRSRSALRDVGRALGIDASVVEQVVKGQAWWESGQGFLDRIGRY----GLD 521

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
               P+V +   ++ +L G  RH S H  G V+    LS+LVP+     +D  V Q++   
Sbjct: 522  RESPAVQQWASLTTQLHGFPRHLSQHVGGFVMARGKLSRLVPIENAAMADRSVIQWDKDD 581

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFL-------AQRGVKVDLSLIPFDDHETYHLLTTK 615
            +E  GL+K D L L  L+ ++++L  +       A+ GV   +  +P +D  TY ++   
Sbjct: 582  LESLGLLKVDVLALGMLSAIRRALAMIPNPDESLAEAGVPARMEDVPKEDKATYAMICRA 641

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK------E 669
             T+G+FQ+ES   +  L  +QP    D++  V++ RPGPI   +V+   K  +      +
Sbjct: 642  DTIGVFQIESRAQQSMLPRLQPRVYYDLVVEVAIVRPGPIQGGMVHPYLKRREAFRRTGK 701

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
              V  + +I  +L  T GV I+QEQVMQ+A   +G++  +AD LRR+M    +    +Q 
Sbjct: 702  PPVYFNDVIKKVLGRTLGVPIFQEQVMQLAIDAAGFTAGQADKLRRSMAAWRRRGDLRQH 761

Query: 730  ERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +  +  A ++    ++ A+ I + +  F +YGF +SHAA++A + Y +AW+K H+P  FL
Sbjct: 762  QEALIRALTERKYPESFALAICKQIEGFGEYGFPESHAASFAKLVYISAWLKCHHPSAFL 821

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSL 839
             A +  +        +  QDA++  + ++P  V     D  +             +   L
Sbjct: 822  CALLNSQPMGFYSPSQLVQDAQRHGVVVLPVDVTVSNWDSTLEPAPGQTGAGKPPVRMGL 881

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
              +KG+    A  I  A A +PFDS+ED   R     L+R  ++ L  A AL     +R 
Sbjct: 882  GRVKGMREAAALRIEAARAQRPFDSVEDLALRAS---LDRHDIDVLAAADALAALAGNRR 938

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            Q                      H ++  HE      ++TL              +    
Sbjct: 939  QARWQASAA---------ALQVAHRDLL-HEAPLIERQLTLP---APRLGEEVAADYAST 985

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G     HPL + +  L  M     E+      G  +R   +V  +Q+  T  G+   + T
Sbjct: 986  GLSLKSHPLALLRAKLEAMDYATAEQLSRCRNGRRVRTCGIVTVRQRPATASGT--IFAT 1043

Query: 1020 FSEPAKEYEANFFP 1033
              +        F+P
Sbjct: 1044 IEDETGTVNLIFWP 1057


>gi|326795443|ref|YP_004313263.1| Error-prone DNA polymerase [Marinomonas mediterranea MMB-1]
 gi|326546207|gb|ADZ91427.1| Error-prone DNA polymerase [Marinomonas mediterranea MMB-1]
          Length = 1057

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 250/1043 (23%), Positives = 450/1043 (43%), Gaps = 84/1043 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L V SSY+  +GA     ++++        IAITD  +L   ++  + +   GI  
Sbjct: 24   RYAELHVISSYTFQQGASHPWELVERAQKLNYAGIAITDECSLAGVVKAHEASKEHGIPL 83

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG    +                    S+++L  + E Y++L  L+++    +  K   
Sbjct: 84   IIGSTFQV-----------------KGFSLIVLAPSIEAYRKLSMLITKGR-RNAEKGHY 125

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDR-AFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             +    L++  +E    L G     +        S       +      + + +++ L Q
Sbjct: 126  HL---QLEDYLSE----LQGCLFIIVITDNTLEQSFSSITSNIKKISDCYPNNVWLGLQQ 178

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRP 246
                 DR ++  V +L     LP+ A ++            DV+ A+     V++   R 
Sbjct: 179  LLTPTDRAKKQTVYRLFSMLRLPVTAVSSVDMHEPSRQPLRDVMTAIRLHASVNKLNGRQ 238

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                + +L++  ++  ++SD    LE ++ I  RC F L       P+ +  E       
Sbjct: 239  APNAETHLRSPKKLRKLYSDQE--LEESLTILERCHFSLDELKYDYPKDLVPEG----TT 292

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L+     GL  R +          Q   ++++ EL++I  +KF  YFL V D +++
Sbjct: 293  PSGYLKQLTYEGLHRRYSDCV------PQAIEKQIEKELSIIKELKFEHYFLTVWDIVKF 346

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A+K NI    GRGS A S   Y L IT+++P    LLFERF++ +R   PD D+DF  +R
Sbjct: 347  ARKRNIL-CQGRGSAANSAVCYCLGITEVNPANTDLLFERFISKERHEPPDIDVDFEHER 405

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  +YG ER A   T  + +AK+A+RDVG+AL      + +L K +       
Sbjct: 406  REEVIQYLYQRYGRERAALAATVITYRAKSAIRDVGKALGYEEHFLSKLIKKLDRRDKAT 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
              L+ ++D    + +      +  +    +++ G  RH S H  G VI    +  LVP+ 
Sbjct: 466  PWLKQLSDYGNAKPSYQFQLFLKLV----EEILGFPRHLSQHVGGFVIAAERVDHLVPVE 521

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                    + Q++   +E  GL+K D L L  LT ++KSL+ +++ +G    L  IP +D
Sbjct: 522  NASMEGRTIIQWDKDDLESLGLLKVDVLALGMLTAIKKSLNLISKIKGAPFTLQSIPRED 581

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
            H+ Y +L    ++G+FQ+ES      L  ++P+C  D++  V++ RPGPI   +V+   +
Sbjct: 582  HKVYDMLQKGESIGVFQIESRAQINMLPRLKPNCFYDLVIQVAIVRPGPIQGGMVHPYLQ 641

Query: 666  NG--KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
                 + I      I  +L  T GV I+QEQV+++A + + +S  EAD LRRAM    + 
Sbjct: 642  RRAGTQAINYPSAEIKSVLNRTLGVPIFQEQVIKLAMVAASFSAGEADQLRRAMAAWKRT 701

Query: 724  EM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
                  +++   G  + G  +  A  +   +  F +YGF +SHAA++A++ Y ++W+K +
Sbjct: 702  GRLKPFQDKLKQGMLERGYDEVFADQLCMQIQGFGEYGFPESHAASFAILVYFSSWLKHY 761

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----------- 831
            YP  F  + +  +        +  QDA++  + + P  V     D  +            
Sbjct: 762  YPTVFCCSLLNSQPMGFYTPYQLIQDAQRNGVIVKPVCVQHSEWDHTLERLSESEQQNQQ 821

Query: 832  --DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
                 I      +KG+    +  + +   + PF SLE+F +RV     N+R  E+L  +G
Sbjct: 822  DKQFAIRLGFRLVKGMSHEGSVRLTQKRGNTPFTSLEEFLNRVKP---NKRDKEALASSG 878

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
            A      +R Q    +   Q+  +               + +     KI L      +  
Sbjct: 879  AFSVLSGNRFQARWDILGHQQETEL--------------NLELNNETKIALP---TPSEQ 921

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
            +    + + +G     HP+   +            E         IR++ +V  +Q+  T
Sbjct: 922  IDTLEDLKSMGVSLGKHPMRFLREQGACYKCTPSNELEQGTHQQLIRVSGLVTGRQRPGT 981

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
              G  + ++T  +         +
Sbjct: 982  ASG--VTFITLEDEFGNTNVVVW 1002


>gi|326387892|ref|ZP_08209498.1| DNA polymerase III subunit alpha [Novosphingobium nitrogenifigens DSM
            19370]
 gi|326207938|gb|EGD58749.1| DNA polymerase III subunit alpha [Novosphingobium nitrogenifigens DSM
            19370]
          Length = 1122

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 251/1065 (23%), Positives = 435/1065 (40%), Gaps = 89/1065 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L + S +S L GA    ++          AI I D N++   +    +A A  ++P+
Sbjct: 27   FVELGLMSCFSFLRGASDAVDLALTARRLGYDAIGIADANSMAGVVRLHGEARALHLRPV 86

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-----QG 125
            IGC++                      S +        Y RL  L+S   +       Q 
Sbjct: 87   IGCRI----------------ETVEGLSFLAYPRDRAAYGRLCRLISLGRMETPDGEWQD 130

Query: 126  KQSVRICLSWLQEIGTEGL-IMLTGGSS------GPIDRAFFFNSSQVAEKRLLTFKKLF 178
            K   +I L  L + G EG+ ++L            P+           A   +      F
Sbjct: 131  KGRCQITLPMLSDQG-EGIALVLVPPRELDTQLTIPVASNVVALGESRAPSLM-PLSASF 188

Query: 179  GD------------RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
             D            R       HRG D  R + +  L   + L L+ATN+ L+       
Sbjct: 189  PDLVPRLVHILPGMRHIAACYLHRGDDVARINALDALTRANGLELLATNDVLYHEAARRP 248

Query: 227  AHDVLMAVAHSTVV-SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
             HDV+ A+ H T V +         + +LK+  EM  +F   P A+     +A  C+F L
Sbjct: 249  LHDVMTAIRHRTTVAAAGHLLEAHGERHLKSPQEMQRLFDRWPHAISAARTLADACTFSL 308

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                   P  I  E  D     ++ L  +  +G   R  +G        +     L  EL
Sbjct: 309  DDLRYEYPEEICPEGCD----PQDWLEERTWSGAAWRYPEGV------PESVAATLRREL 358

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPV-GPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
             +I +++ + YFL + D + +A+    P+   GRGS A S   Y L IT +DP + +LLF
Sbjct: 359  ALIGKLQLATYFLTIKDIVDFARGQEPPILCQGRGSAANSAVCYCLGITAVDPAKHALLF 418

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            +RF++ +R   PD D+DF  +RR+EVI+Y+  +YG  R     T    + + A+R+VGRA
Sbjct: 419  DRFISEERKEPPDIDVDFEHERREEVIQYIYRRYGRRRAGLCATVIHYRPRMAIREVGRA 478

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            + +       L + +       ++ + +A         L DP + R+L +++++ G+ RH
Sbjct: 479  MGLTDDVTGALARTVWGSWGSGLAERNVAQ----AGFDLGDPHLRRVLRLAEQMIGMPRH 534

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
             S H  G ++   PL + VP+      +    +++   I+  G++K D L L  LT ++K
Sbjct: 535  LSQHVGGFILTQGPLVETVPIGNGAMPERSFIEWDKDDIDALGILKVDVLALGMLTCIRK 594

Query: 585  SLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
             LD L     +   L+ IP +D   Y +L    +LG+FQ+ES      L  ++P    D+
Sbjct: 595  CLDLLEAHHGRPLTLATIPREDQAVYDMLCRGDSLGVFQVESRAQMNMLPRLRPQEFYDL 654

Query: 644  IALVSLYRPGPIDNIVVYNNRKNG----------KEKIVSIHPLIDPMLKETQGVIIYQE 693
            +  V++ RPGPI   +V+   K             +        +  +LK T GV I+QE
Sbjct: 655  VVQVAIVRPGPIQGDMVHPYLKRRRGVETVSIPAPDPRHGPPDELTSILKRTYGVPIFQE 714

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKI-KEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            Q M+IA   + +   EA+ LR+AM     +  + + +E  +      G     A   F  
Sbjct: 715  QAMKIALDAAKFDSGEANRLRKAMATFRSRGMVHELEELMVGRMIARGYDPEFATRCFNQ 774

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  F +YGF +SHAA++A++ Y ++W+K HYP  F    +  +        +  +DAR  
Sbjct: 775  IKGFGEYGFPESHAASFALLVYVSSWLKCHYPAVFACGLLNSQPMGFYAPAQIVRDARDH 834

Query: 813  NIQIMPPSVNTPCVDFKV--GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFC 869
             + ++P  +N    D  +      +      + G+       ++ A   +  +  L D  
Sbjct: 835  GVTVLPVDINHSEWDCTLEQEGAALRLGFRQVDGLAEHRVAALIAARQHEGAYVDLADVK 894

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            +R         ++E L  A A    G SR + L    ++                 +FA 
Sbjct: 895  AR---SGQPPAIIERLAAADAFGSLGLSRREALWQARSLI----------AAPELPLFAA 941

Query: 930  EKGTFSDKITLEK-FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
                      ++    V   +     + +        HP+   +P L + G     +   
Sbjct: 942  MGARGEGAEAVQARLPVMPLAEEVVADYQTQRLSLKAHPMAFLRPGLAERGFLRSCDLRN 1001

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                + + +A +V+ +QQ  + KG  + ++T  +         +P
Sbjct: 1002 RKTRSMVHVAGLVLVRQQPGSAKG--VCFITLEDETGVINLVIWP 1044


>gi|127513028|ref|YP_001094225.1| DNA polymerase III, alpha subunit [Shewanella loihica PV-4]
 gi|126638323|gb|ABO23966.1| DNA polymerase III, alpha subunit [Shewanella loihica PV-4]
          Length = 1078

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 253/1078 (23%), Positives = 437/1078 (40%), Gaps = 117/1078 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L V S+YS L GA   + ++++       A+A+TD  +    ++  + A    ++ I
Sbjct: 7    YAELHVLSNYSFLRGASHPHELVEQAKRLGYQALALTDECSFAGVVKAHEAAKRCDLKLI 66

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +  +D                     VLL      Y  +  L++      QGK   R
Sbjct: 67   LGAEFHLDEGL-----------------FVLLAPCRFAYGEISALITNAR-RSQGKGEYR 108

Query: 131  ICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE--------------------- 168
            + L   L +  +   ++L    S    R         A                      
Sbjct: 109  VSLEAILAQQQS---LLLWRPPSLAQFRQAGEARRDEARSDDARSDLAVNDTAESEMAGG 165

Query: 169  -------------KRLLTFKKL-----------FGDRLYVNLQRHRGYDRYRE-SQVVQL 203
                           L  ++             F DRL++ ++R           Q   L
Sbjct: 166  DTAKGSAAQSDEPNLLSRYRDHIASIASRLVVAFPDRLHLLMERLLLPGEALNLQQWQWL 225

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
            + T ++P VA         E     D+L  +AH   +        + +     +      
Sbjct: 226  SQTQKVPCVAAGGVRMHEAERQPLLDILTCIAHGRDLDSG-VALCSINAEASLKPIAAQR 284

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
                 E ++N + +ARRC F L       P  +         +  + L      G   R 
Sbjct: 285  KRYPQEWIDNGLALARRCHFSLDELKYEYPAEVVPAGM----QASDYLAQAVREGARRRF 340

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
              G           + + + EL +IA M +  +FL + D + +AK   I    GRGS A 
Sbjct: 341  PDGV------PDRVKAQYEKELELIAAMAYEYFFLTIYDIVCFAKSQQILY-QGRGSAAN 393

Query: 384  SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
            SV  Y L IT++DP + ++LFERF++ +R   PD D+DF  +RR+EVI+Y+  KYG +R 
Sbjct: 394  SVVCYCLGITEVDPTKINMLFERFISKERNEPPDIDVDFEHERREEVIQYIYRKYGRDRT 453

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
            A        + K+A+ DVG+AL +   QV  + K I                ++      
Sbjct: 454  ALAAAVICYRFKSAMGDVGKALGIDAEQVALMIKNIDRRDPKH------HWTTQLAAMLP 507

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWI 563
                   LL + Q L G  RH S H  G +I   PLS+LVP+     +D  V Q++   +
Sbjct: 508  EAGRGRMLLPLVQTLIGFPRHLSQHVGGFIISAGPLSELVPIENAAMADRTVIQWDKDDL 567

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
            E  GL+K D L L  LT ++K+   L+       ++ + +++ E Y +L    ++G+FQ+
Sbjct: 568  ESLGLLKVDILALGMLTAIRKTFTLLSLPEKAFSMADVAWEEAEVYRMLQAGDSIGVFQV 627

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPM 681
            ES      L  ++P C  D++  +++ RPGPI   +V+    R++G E +    P ++ +
Sbjct: 628  ESRAQSAMLPRLKPACYYDLVVQIAIVRPGPIQGDMVHPYLRRRDGLEAVEYPSPAVESV 687

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM-DKQKERFISGASKNG 740
            L  T GV I+QEQV+Q+A + +G+S  EAD LRRAM    +    +K + + + G +  G
Sbjct: 688  LSRTMGVPIFQEQVIQLAMVAAGFSGGEADQLRRAMASWKRTGELEKFEAKLLQGMAARG 747

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             S+T A  I+  +  F +YGF +SH+A++A+++Y +A++K HYP  F  A +  +     
Sbjct: 748  YSQTFAEQIYRQIKGFGEYGFPESHSASFALLAYVSAYLKHHYPAAFCCALLNSQPMGFY 807

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFK------VGDNRIYYSLAAIKGVGTTTARHIM 854
               +  QD ++ ++ ++P  VN    D             I      +KG+     + ++
Sbjct: 808  SPSQLIQDVQRHDVMVLPVCVNHSDWDNSLVPLLEAEQPAIRLGFRQVKGLRLEEIKTLI 867

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
             A  +  F  +E          L++  L  L  A AL      R Q    L         
Sbjct: 868  AARPEGGFTRVEQLYE----LGLSQGCLTLLASADALLTLAGHRYQARWQLSAY------ 917

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
                       +F       S+ +     +  +     +++ R LG     H +   + +
Sbjct: 918  ------QPSLPLFDDLPAVASEVV----LAPPSEMAAMQSDYRHLGLSLGRHVMAQLRGL 967

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +G +   E      G  + +A +VV +Q+  T  G  + +VT  +         +
Sbjct: 968  APFVGCRHASELADCRHGQLVHVAGVVVGRQRPGTASG--VTFVTLEDETGNINVIVW 1023


>gi|259415528|ref|ZP_05739449.1| error-prone DNA polymerase [Silicibacter sp. TrichCH4B]
 gi|259348758|gb|EEW60520.1| error-prone DNA polymerase [Silicibacter sp. TrichCH4B]
          Length = 1126

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 268/1061 (25%), Positives = 436/1061 (41%), Gaps = 86/1061 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC----- 63
            P +  L V S+++ L GA     ++ + A     AIAITD N+L   +            
Sbjct: 25   PGYAELCVTSNFTFLTGASHPEELMTRAAELGLAAIAITDRNSLAGVVRAWSALKELRRE 84

Query: 64   -AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP---------SIVL---------LVS 104
              AG+Q  I     ID      + N      P  P          +VL         L  
Sbjct: 85   AEAGVQ--IRSHQRIDPSSRQDIGNAATLEKPATPILPKLIVGCRLVLRDSQTDWIALPR 142

Query: 105  TAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEG-LIMLTGGSSGPIDRAFFFNS 163
                Y RL  L++        K    +    L        LI L       +  A     
Sbjct: 143  DRTAYSRLTRLLTLGKRR-APKGECHLDTKDLMASCRGMTLIAL---PQAELKTAIPD-- 196

Query: 164  SQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
                   +   ++ F   +++    R+ G D+   +   Q A     P+VA  + L    
Sbjct: 197  -------IRRMQQAFPHHVFLGAAPRYDGSDQAYLAACAQAAQVTSAPMVAVGDVLMHRA 249

Query: 223  EDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
                  DVL  +    T+     R  +  +  LK  ++M  +F   P AL  T+EIA  C
Sbjct: 250  SRRPLADVLTCMREHITIDEIGSRALLNSERRLKAGADMARLFRAHPGALRRTLEIADTC 309

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            SF L   +   P  I        +  +  L   A  GL+ R   G        +     +
Sbjct: 310  SFDLGELSYDYPHEIVD-----GETPQVRLERLAAKGLKRRYPDG------PPEKAITLM 358

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
              ELN++A + F+ YFL V D +Q+A+  NI    GRGS A S+  Y L ITD+ P   +
Sbjct: 359  KKELNLVADLGFAAYFLTVHDIVQYARSQNIL-CQGRGSAANSILCYLLGITDVSPDMIT 417

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            ++FERF++  R   PD D+DF  +RR+EVI+++  KYG ER     T    +++AA+R+V
Sbjct: 418  MVFERFVSRYRGEPPDIDVDFEHERREEVIQWIYQKYGRERAGLCATVIHFRSRAAIREV 477

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
            G+ + +       L   I       V L+ I +     + R    ++  + +    + G 
Sbjct: 478  GKVMGLSQDVTAGLSGQIWGMSNGGVDLKRIEELGLNIQDRRLMQTIRLIGD----IIGF 533

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             RH S H  G VI    L +L P+      D  V +++   I+  G++K D L L  LT 
Sbjct: 534  PRHLSQHVGGFVITRGRLDELAPIENAAMEDRTVIEWDKDDIDALGILKVDVLSLGMLTC 593

Query: 582  LQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            LQK+        G    ++ +P  D  TY +L     +G+FQ+ES      L  M+P   
Sbjct: 594  LQKAFALLQTHEGETWSIASVPQGDQPTYDMLCRADAVGVFQVESRAQMNFLPRMRPQEF 653

Query: 641  EDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
             D++  V++ RPGPI   +   Y  R++G E+     P ++ + K T GV ++QEQ MQI
Sbjct: 654  YDLVIEVAIVRPGPIQGDMVQPYIRRRHGLEEPEPFGPELEQVTKRTLGVPLFQEQAMQI 713

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            A + +G++  EAD LRR++    +   +   +++FI+G      +  +A   F  +  FA
Sbjct: 714  AVVGAGFTPEEADHLRRSLASFRRMGTIGTFRDKFINGMLDKDYAPEVAARCFSQIEGFA 773

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            DYGF +SHAAA+A+++Y +AW+K HYP  F  A +  +        +  +DAR+  ++I 
Sbjct: 774  DYGFPESHAAAFAMLAYVSAWLKCHYPAVFACALLNSQPMGFYAPAQIVRDAREHGVEIR 833

Query: 818  PPSVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            P  VN    D ++         +      IKG     A  I  A  +  +   +    R 
Sbjct: 834  PICVNASDWDNQLERRPDGALALRLGFRQIKGFREEDAGWITAARGNG-YPDPDTLWLRA 892

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
              +     VL  L  A A    G +R   L  +  I          R+ +   +F     
Sbjct: 893  GVRP---DVLTRLAEADAFSDMGLTRRDALWQVKAI----------RSPQPLPLFNDPID 939

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
              S         V +       +          HP+++ +P L   G+  +        G
Sbjct: 940  GESISEPSVDLPVMHLGEEVVEDYVATRLTLRAHPMELLRPSLP--GLTPHAALQTVPLG 997

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +  +  +V+++Q+  T  G  + ++T  +         +P
Sbjct: 998  RHA-VCGLVITRQRPGTASG--VIFLTLEDETGVSNIVVWP 1035


>gi|323440753|gb|EGA98462.1| DNA polymerase III alpha subunit [Staphylococcus aureus O11]
          Length = 1065

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 314/1022 (30%), Positives = 508/1022 (49%), Gaps = 81/1022 (7%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G 
Sbjct: 5    LNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFGM 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + +    N   T             V+L     G + L +L S++ +         +  
Sbjct: 65   TIYVTNGLNTIET-------------VVLAKDNNGLKDLYQLSSKIKMNSIEN----VSF 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              LQ+  +  +I              F N +      +  F     +  Y+    HR   
Sbjct: 108  ELLQQFSSNLII-------------IFKNVADEHRGIVQVFDSH--EDTYL---DHRSV- 148

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +VQ      +  V      + + +D +    L A+  +T +             
Sbjct: 149  ------LVQ-----GIKHVWIQTVCYQTPQDADTISALAAIRDNTKLD-----------L 186

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            + ++ +  + F    E  +  +         +            +      +   +E   
Sbjct: 187  IHDQEDFGAHFLTEKEIKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQYQTPNDESAK 246

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            K +      L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ 
Sbjct: 247  KYLW---RVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVM 303

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ VI+Y
Sbjct: 304  VGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQY 363

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            VQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  +IP+     +      
Sbjct: 364  VQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSVIPHKLGITLDEAYQI 423

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            DD  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +      
Sbjct: 424  DD--FKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG-- 479

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612
             +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + LL
Sbjct: 480  LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFDLL 539

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+ 
Sbjct: 540  SQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQ 599

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ F
Sbjct: 600  YLHPYLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHF 659

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  +
Sbjct: 660  IEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANIL 719

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + + 
Sbjct: 720  SNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSKEGIYLSIGTIKGVGYQSVKV 779

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +   
Sbjct: 780  IVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDG 839

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
               +E++       +F       + K   E       ++  + E+  LGFY S HP+D  
Sbjct: 840  DLNIEQD-----GFLFD----ILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD-- 888

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
              +          +         I +       +Q +T+ G  + +VT ++  +  +   
Sbjct: 889  -KMFVAKQYLTIFKLSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLDGVI 945

Query: 1032 FP 1033
            FP
Sbjct: 946  FP 947


>gi|282932049|ref|ZP_06337507.1| DNA polymerase III subunit alpha [Lactobacillus jensenii 208-1]
 gi|281303816|gb|EFA95960.1| DNA polymerase III subunit alpha [Lactobacillus jensenii 208-1]
          Length = 1039

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 317/1026 (30%), Positives = 524/1026 (51%), Gaps = 44/1026 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS+SLL+  + +++++         ++A+TD N  +  ++F   A  A ++P++G 
Sbjct: 6    LQTLSSFSLLKSPILIDDLVKDAVDKGYSSLALTDINVTYGLVDFYLAAQKANLKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
             + ++          G         ++ +    +GY+ ++ L S + L  D G +   + 
Sbjct: 66   TIRLN----------GIVDQAHRYDLISIAKNNQGYKNILRLSSAINLKTDNGDERKVLT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
            L  L +  ++ + ++    +  + R    N+ ++    +   +K+      LY+ +  + 
Sbjct: 116  LKQLAKYLSDQVFIVPANITSEL-RYLAENNEKLGSDFIRELQKIIPSSSDLYLGV--YA 172

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD---RPR 247
            G ++        +A    LPL AT +  +L   D+     L A+     +         +
Sbjct: 173  GKNQPYIDYAKSMAKQFNLPLAATEDVQYLPASDHFLVKTLRAIEQGQKLVDTSSLALQK 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +                 +  AL N  +IA  C   +    P LP++ +    D +K  
Sbjct: 233  GSHYLRTSGELVSAYNECGILSALHNAAKIADECKASVTFTQPELPKYKQSFAPDSKK-- 290

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     GL  R     I      + Y++RLD+EL +I +M F  YFLIV D I +A
Sbjct: 291  --YLRQLVQKGLARRFNGQTI-----PEIYQKRLDYELKIIDQMGFDDYFLIVWDVINYA 343

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
               +I  GPGRGS AGS+ AY+L IT++DP++++LLFERFLNP R  MPD D+D   +RR
Sbjct: 344  HSVDITTGPGRGSAAGSLVAYSLAITEVDPIKYNLLFERFLNPARAQMPDIDLDIPDNRR 403

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+I+Y+  KYG +  AQI+TFG+L AK ALRD  R   +   Q  +    IP   +   
Sbjct: 404  DEIIKYMFEKYGMDHAAQILTFGTLAAKQALRDCARVFGLTTIQASKFTHAIPFSKSKIT 463

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              QA  +    +    A      L + + +LEG+ RHAS HAAG+VI D+ ++Q+  +  
Sbjct: 464  LAQAYQESKALQLLVNASELNKLLFKTAMRLEGIPRHASIHAAGLVISDKSIAQIAGLQ- 522

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
                 +PVTQ     +E+ GL+K DFLGL+ LT+L  +++ LA+ G+K+D   IP DD +
Sbjct: 523  AGTLGIPVTQQTKAHVEELGLLKIDFLGLRNLTILGDTVELLAKDGIKLDPKRIPLDDVK 582

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T  +FQ ES G++  L  + PD  ED++A+ +LYRPGPI NI  + NRK G
Sbjct: 583  TLQLFQRGKTDAVFQFESQGIKNVLRRLHPDSFEDVVAVNALYRPGPIQNIDHFINRKQG 642

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KE I      +  +L+ T G+++YQEQVMQ AQ+++G+SL EAD+LRRAM KK ++ +D+
Sbjct: 643  KEPITYPDSSLAKLLQPTYGILVYQEQVMQTAQIMAGFSLGEADLLRRAMSKKKQDLIDQ 702

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++E+FI+GA KNG  +  A  ++  + +FA+YGFN+SHA AY+ I++  A++K HYP  F
Sbjct: 703  EREKFIAGAVKNGHPQATASKVYAYIEQFANYGFNRSHAVAYSKIAFWLAYLKVHYPAAF 762

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A +     N  K  ++   A++  ++I+ P +N    D+ + + +I   L AIKG+  
Sbjct: 763  FTALLNSVSANRVKAGEYITQAQEAGVKILAPDINNSQTDYYLVNGQIQVGLKAIKGLRV 822

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               R+I     +  F SL DF  ++D K L+ + + +++ AG  D    +R  LL +   
Sbjct: 823  DFLRNIAGLPKN--FTSLADFLRKIDVKFLSEQAIAAMIKAGCFDKIDENRKMLLANCKE 880

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            I +  ++  +N T     +     G     I LE+    NS+ +   E+ VLGF  +  P
Sbjct: 881  IVENIKFTGQNET-----LSEGLGG-----IRLEQAPAPNSNEKATMEEEVLGFSTTKTP 930

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            + V +    +   +          G  +     ++  +  +T+KG  + + TF + + E 
Sbjct: 931  ILVVQKYAERFNAQALNSFTVNETGIAV---GKLIKLKLIRTKKGDTMAFSTFRDASSEQ 987

Query: 1028 EANFFP 1033
            E   FP
Sbjct: 988  EITIFP 993


>gi|90020675|ref|YP_526502.1| pantoate-beta-alanine ligase [Saccharophagus degradans 2-40]
 gi|123396461|sp|Q21LY9|DNAE2_SACD2 RecName: Full=Error-prone DNA polymerase
 gi|89950275|gb|ABD80290.1| DNA polymerase III, alpha subunit [Saccharophagus degradans 2-40]
          Length = 1029

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 256/1036 (24%), Positives = 443/1036 (42%), Gaps = 78/1036 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQ  ++YS L+ A     ++++       A+AITD  +L   ++    A    ++ +
Sbjct: 3    YTQLQTLTNYSFLKSASHPQELVEEAKILGYHALAITDECSLAGIVKAHVAAKELNLKLL 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G   ++                     I+ +    + Y  L   +S        K    
Sbjct: 63   VGSYFELTNG----------------FKIIAIAPNRQAYAELSGFISLARRR-ASKGEYE 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              LS L+    + LI+            +F N     +  + T    F  RL++ +    
Sbjct: 106  AHLSDLRFRLQQCLIIWLP---------YFNNHISDVD--VTTLATAFKQRLWIGVSHTL 154

Query: 191  G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               ++   S + +LA    +PLVA+  +   ++      D+L A+  +T + Q      +
Sbjct: 155  IAAEQRLFSHLNKLANALHVPLVASGLTYMHNKNCKPLLDILTAIRENTPIQQLGTRLHS 214

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                       ++        ++ T  IA+ C+F L       P+ +             
Sbjct: 215  NAEVNLKPLHELNQL-YPEALIQQTQVIAQLCNFSLDELRYQYPKELVP----SNTTPIA 269

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L+     G   R  QG        +  ++ +  EL +I  M++  YFL V D + +A+ 
Sbjct: 270  HLKKLVKEGEAKRWPQG------TPEHAQKIIAMELGLIEEMQYEYYFLTVHDIVHFARS 323

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
             NI    GRGS A SV  Y L IT+I P + ++LFERF++ +R   PD D+DF   RR+E
Sbjct: 324  KNIL-CQGRGSAANSVVCYCLFITEIAPGQINVLFERFISKERNEPPDIDVDFEHQRREE 382

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+  KYG ER A   T  + ++++A+RDVG+A+ +    V +L K +        + 
Sbjct: 383  VIQYIYQKYGRERAALAATVITYRSRSAIRDVGKAMGLEAGLVGQLAKSLAWWD---RTG 439

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
              I     F        ++     + Q++ G  RH S H  G +I    +S LVP+    
Sbjct: 440  DLIKRMESFGLNPETQKTMQHFFALVQQILGFPRHLSQHVGGFIITQDKVSDLVPLENAS 499

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              D  + Q++   IE  GL+K D L L  LT L+KSL+ ++Q       L+ IP +D  T
Sbjct: 500  MPDRTIIQWDKYDIEAMGLLKVDVLALGMLTALRKSLETVSQYDAAVYSLATIPREDPAT 559

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKN 666
            Y +L+   ++G+FQ+ES      L  ++P C  D++  +++ RPGPI   +V+    R++
Sbjct: 560  YAMLSKGDSIGVFQVESRAQMSMLPRLRPKCFYDLVIEIAIVRPGPIQGDMVHPYLRRRD 619

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM- 725
            G E++   +  I  +L+ T G+ I+QEQ +++A + + +S  EAD LRRAM    K    
Sbjct: 620  GIEEVHYQNDKIKSVLEPTLGIPIFQEQAIRLAMVAADFSGGEADQLRRAMASWGKNGSL 679

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             K +++FI G   NG     A  +FE +  F  YGF +SH+A++A++ Y ++W+K H+P 
Sbjct: 680  LKFEDKFIQGMLNNGYPLDFAHRLFEQIKGFGGYGFPESHSASFALLCYASSWLKCHHPA 739

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIY 836
             F  A +  +        +  QDAR+  + ++P  VN    +  V           N I 
Sbjct: 740  AFYCALLNSQPMGFYSASQLIQDARRHKVVVLPVEVNASGYESHVVLTNHNTSAPPNIIQ 799

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  IKG+   TA  I+ A  DKPF +L++   R    +L+   L+ L  A AL     
Sbjct: 800  LGLHMIKGLSILTAERIVLAKGDKPFTTLKELSLRA---QLSSADLQLLASADALHKLTG 856

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R         +              H  +    +               +     + + 
Sbjct: 857  NRHNSRWQAAALM------------PHSPLLDGAELEEDAL----NTPAPSIEKNIQTDF 900

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
               G     HP+ + +        K   E  +   G   ++A +V  +Q+  T KG+   
Sbjct: 901  NSTGLSLRLHPMALLRAQQPFNRCKKQSELASIHNGGFAQVAGLVTGRQRPGTAKGTL-- 958

Query: 1017 WVTFSEPAKEYEANFF 1032
            ++T  +         +
Sbjct: 959  FLTLEDETGNINIVVW 974


>gi|300022283|ref|YP_003754894.1| DNA polymerase III subunit alpha [Hyphomicrobium denitrificans ATCC
            51888]
 gi|299524104|gb|ADJ22573.1| DNA polymerase III, alpha subunit [Hyphomicrobium denitrificans ATCC
            51888]
          Length = 1115

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 241/1072 (22%), Positives = 436/1072 (40%), Gaps = 96/1072 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK---ACAAG 66
            S+  L   +++S L GA +  + + +        I I D N L   +            G
Sbjct: 3    SYAELATTTNFSFLRGASNPEDFVGRAILLGHTGIGIADRNTLAGVVRAYGALQDLRREG 62

Query: 67   IQ----------PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV------------- 103
            +           P  G    +    + +  +          S  LL              
Sbjct: 63   LPAPQKVREGSGP--GEYAWVVDGKSREWADFSNAIKARAESFTLLAGARLVFMDGTPDI 120

Query: 104  ----STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEG-LIMLTGGSSGPIDRA 158
                    G+ RL  L++    L + K    +C   L     +  LI+++          
Sbjct: 121  IAYPENRAGWARLCRLLTHGKRLAK-KGECSLCREDLLSDCADLQLIVMSPPV------- 172

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNS 217
                     E  +    K   + +++    H +G D     ++  +A +  +PL+A N+ 
Sbjct: 173  -----LDGFEAYVRVIAKAAPNNVWLAASLHLKGDDSRVLHRLSAIAKSSNVPLIAVNDV 227

Query: 218  LFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
            L+   E     D+L  +     + +   R     + +LK+  EM  +F D P A+  T +
Sbjct: 228  LYDVPEQRPVQDILTCIREGLRIEAAGTRLEANAERHLKSSEEMERLFRDYPSAVAATQD 287

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
            + RR SF L       P              +  L + +      R   G        + 
Sbjct: 288  LLRRISFSLGELKYEYPEEPVPAGW----TPQGWLEHLSWQKAGERYPSGV------PEK 337

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
             +Q++  EL +IA++ ++ YFL V D +++A +  I    GRGS A S   Y L IT +D
Sbjct: 338  VQQQVTEELKLIAQLDYAPYFLTVYDIVRYANEKGIL-CQGRGSAANSAVCYVLGITAVD 396

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            P + +LLF RF++ +R   PD D+DF  +RR+EVI+Y+  +YG ER   + T    + ++
Sbjct: 397  PEQHNLLFARFISSERREPPDIDVDFEHERREEVIQYIYERYGRERAGLVATVIRYRPRS 456

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            A+R+VG+ L +      R+   +       +S   +    R       +P + + +  + 
Sbjct: 457  AIREVGKVLGLSEDITSRIAGTVWGSWGSKLSETHL----RQAGIDHRNPVIGQAIAFAT 512

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            ++ G  RH S H  G V+    L ++VP+      D    +++   I+  GL+K D L L
Sbjct: 513  RILGFPRHLSQHVGGFVLARGRLDEIVPIGNAAMDDRTFIEWDKDDIDVLGLMKVDVLAL 572

Query: 577  KTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
              LT ++K+ D +    G   +L+ +P +  + Y +L    ++G+FQ+ES      L  +
Sbjct: 573  GMLTCIRKAFDLIRTHEGESFNLATLPAEQPDIYAMLQKGDSIGVFQVESRAQINMLPRL 632

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHP-------LIDPMLKETQ 686
            +PD   D++  V++ RPGPI   +V+    R+  +E++    P        +  +L  T 
Sbjct: 633  RPDKFYDLVIQVAIVRPGPIQGDMVHPYLRRRKNREEVTFPSPKPPHDPDELKNVLSRTL 692

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTI 745
            GV ++QEQ MQ+A + + ++ +EA+ LRRAM        + K +   +      G  +  
Sbjct: 693  GVPLFQEQAMQLAMVAAQFTDAEANQLRRAMATFRHVGTIGKFESLLVERMVARGYDRDF 752

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A   FE +  F +YGF +SHAAA+A + Y +A++K  YP  F  A +  +        + 
Sbjct: 753  AERCFEQIKGFGEYGFPESHAAAFARLVYISAFIKCRYPAAFACALLNSQPMGFYAPAQI 812

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADK 860
             +DA +  +++ P  VN    D  +     G   +      I G+     + +++   + 
Sbjct: 813  VRDAHEHGVEVYPADVNASDWDNTLCAGAGGKTALRIGFRQIDGLSEDWCKRLIDMRRNG 872

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             +  L+    R    +L +R L  L  A      G  R   L S   +            
Sbjct: 873  -YADLDSLAQRT---RLPQRALRLLADADCFRSVGIHRRDALWSARRLPD---------- 918

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                 +FA  +     +    +    + S     + +       GHP++  + I R  GI
Sbjct: 919  ADELPLFAAAREADLGEEADAQLPAMSLSENIAVDYQTTRLSLKGHPMECLRDIFRGEGI 978

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                E  A   G+  R+A +V+ +Q+    KG+   ++T  +      A  +
Sbjct: 979  ASCAELAAQRDGSWGRVAGVVLVRQRPG--KGNA-IFITLEDETGITNAVLW 1027


>gi|255263692|ref|ZP_05343034.1| error-prone DNA polymerase [Thalassiobium sp. R2A62]
 gi|255106027|gb|EET48701.1| error-prone DNA polymerase [Thalassiobium sp. R2A62]
          Length = 1100

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 250/1052 (23%), Positives = 446/1052 (42%), Gaps = 82/1052 (7%)

Query: 6    EKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
              +P  +V L + S +S L GA    ++  +  A     + I D N L   +    +A  
Sbjct: 21   PNAPCDYVELGLASCFSFLRGASDAVDLASEAWALGYDQLGIADWNTLAGVVRLHTEATK 80

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD- 123
            A I+P+IG ++ +   +                  +   +  + Y RL  L+S+    D 
Sbjct: 81   AHIRPLIGARIVLVTGEAF----------------LAYPNDRDAYGRLSTLISKGRRYDP 124

Query: 124  ----QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
                Q K +  I L+ L        +++    +       F       + RL T + +  
Sbjct: 125  DGVWQAKGACDITLADLAATSDNIQLIVIPPRNLD----LFARDLTRIQHRLPTCRHVAA 180

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              LY       G D  R +Q+  +A    L ++ATN+ L+ +       DV+  +   T 
Sbjct: 181  SYLY------HGDDVARLTQIDSIARARGLDMLATNDVLYHAPHRRPLQDVMTCIREKTR 234

Query: 240  VSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            V +         + +LK+ +EM  +FS  P A+     +A   +F L       P     
Sbjct: 235  VDRAGYLLEPNAERHLKSPAEMQRLFSRWPHAIAAPRVVADAITFALTDLKYEYPSETLP 294

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                       ELR     G + R   G  A        R+ ++ EL +I +M  + Y L
Sbjct: 295  PG----TTASAELRRLTYLGADDRYPAGLPA------KVRKIIEKELALIDKMDIARYIL 344

Query: 359  IVADFIQWAKKNNIPV--GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
             + D +++A+    P     GRGS A S   + L IT +DP    +LFERF++ +R   P
Sbjct: 345  TIDDIVRFARHEATPPILCQGRGSAANSAVCFCLGITAVDPNEHDVLFERFISEERDEPP 404

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  +RR+EVI+++  KYG +R     T    + ++A+R+VG+ + +       L 
Sbjct: 405  DIDVDFEHERREEVIQHIYAKYGRDRAGLCATVIHYRPRSAIREVGKVMGLSEDITGALA 464

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            K +       +      D +R     L+DP + R + ++Q + G+ RH   H  G ++ +
Sbjct: 465  KTVWGSWGSELD----EDRARETGVDLSDPRIRRTITVAQMMIGMPRHLGQHVGGFILTE 520

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
            RPL++ VP+      D    +++   I+  G+ K D L L  LT ++K  D +     V 
Sbjct: 521  RPLTETVPIGNGAMPDRSFIEWDKDDIDALGIFKIDILALGMLTCIRKCFDLMRAHHGVD 580

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             DL++IP DD  TY +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI
Sbjct: 581  YDLAMIPQDDPATYKMLRRGDSLGVFQVESRAQMNMLPRLRPRVFYDLVIQVAIVRPGPI 640

Query: 656  DNIVVYN--NRKNGKEKIVSIHP-------LIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
               +V+    R+N +E +    P        +  +L  T GV I+QEQ M+I+   + +S
Sbjct: 641  QGDMVHPYLRRRNNEEAVEYPQPEPPHDPDELRNILNRTLGVPIFQEQAMKISIEAAEFS 700

Query: 707  LSEADVLRRAMGKKI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
             +EA+ LR+AM     +  ++K +++ +   ++ G     A   F+ +  F +YGF +SH
Sbjct: 701  PAEANELRKAMATFRSRGTIEKLQDKMVGRMTRRGYDPVFAQRCFDQIKGFGEYGFPESH 760

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            AA++A + Y ++W+K HYP  F A  +  +        +  +D R+ + ++    VN   
Sbjct: 761  AASFAKLVYVSSWIKCHYPDVFAAGLLNSQPMGFYAPAQIVRDLREHDCEVREIDVNYSN 820

Query: 826  VDFKVG----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
             D  +        +      IKG+    A  IM    D P+ S  D  +R     +   +
Sbjct: 821  WDNTLEPTADGFALRIGFRQIKGLRADAAHQIMAGR-DAPYTSAADLKTR---SAIGAPI 876

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            +  L  A AL   G  R Q L     ++                +F       +D     
Sbjct: 877  IRRLAAADALRSMGMDRRQALWDARALRDAPD----------LPLFQDHADEGADTPV-- 924

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                  +  +   + +        HP+   +  +++ G    +    +  G  +++A +V
Sbjct: 925  TLPQMPTCEQVVADYQTTRLSLKAHPIAFLRRSMQRQGFIATDVLKQSRNGKRVKMAGIV 984

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +Q+  + KG  + ++T  +         +P
Sbjct: 985  LIRQRPGSAKG--VCFITLEDEVGVANLVVWP 1014


>gi|283470969|emb|CAQ50180.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            ST398]
          Length = 1065

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 323/1022 (31%), Positives = 512/1022 (50%), Gaps = 81/1022 (7%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G 
Sbjct: 5    LNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIFGM 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + +    N   T             V+L     G + L +L S + +         +  
Sbjct: 65   TIYVTNGLNTVET-------------VVLAKDNNGLKDLYQLSSEIKMNALE----HVSF 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              L+      +I              F N +      +  F     +  Y+    HR   
Sbjct: 108  ELLKRFSNNMII-------------IFKNVADEHRDIVQVFDSH--EDTYL---DHRSV- 148

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +VQ      +  V   +  + +  D +    L A+  +T +           H+
Sbjct: 149  ------LVQ-----GIKHVWIQDVCYQTRHDADTISALAAIRDNTKLDLIHDQEDFGAHF 197

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            L      +      PE       IA++C   L+ H  +LP++     +  +K     L  
Sbjct: 198  LT--ENEIQQLDVNPEYFTQADRIAQKCDAELKYHQSLLPQYQAPNDESAKKYLWRVLVT 255

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            +                  +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ 
Sbjct: 256  Q------------LKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVM 303

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++VI+Y
Sbjct: 304  VGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVIQY 363

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            VQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +      
Sbjct: 364  VQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQI 423

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            DD  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +      
Sbjct: 424  DD--FKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG-- 479

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612
             +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + LL
Sbjct: 480  LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELL 539

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+ 
Sbjct: 540  SQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQ 599

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ F
Sbjct: 600  YLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHF 659

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  +
Sbjct: 660  IEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANIL 719

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + + 
Sbjct: 720  SNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKV 779

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I+E    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +   
Sbjct: 780  IVEERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDG 839

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
               +E++       +F       + K   E       ++  + E+  LGFY S HP+D  
Sbjct: 840  DLNIEQD-----GFLFD----ILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD-- 888

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                         +         I +       +Q +T+ G  + +VT ++  +  +   
Sbjct: 889  -KKFVAKQYLTIFKLSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLDGVI 945

Query: 1032 FP 1033
            FP
Sbjct: 946  FP 947


>gi|269203340|ref|YP_003282609.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus ED98]
 gi|262075630|gb|ACY11603.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus ED98]
          Length = 1065

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 309/1022 (30%), Positives = 504/1022 (49%), Gaps = 81/1022 (7%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G 
Sbjct: 5    LNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFGM 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + +    N   T             V+L    +G + L +L S + +         +  
Sbjct: 65   TIYVTNGLNTVET-------------VVLAKNNDGLKDLYQLSSEIKMNSMEN----VSF 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              LQ+  ++ +I+                     +      + +        +Q    ++
Sbjct: 108  ELLQQFSSDLIIIF--------------------KNVADEHRDI--------VQVFDSHE 139

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                     L     +  V   N  + + +D +    L A+  +  +             
Sbjct: 140  DTYLDHQSVLVQ--GIKHVWIQNVCYQTRQDADTISALAAIRDNAKLD-----------L 186

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            + ++ +  + F    E  +  +         +            +      +   +E   
Sbjct: 187  IHDQEDFGAHFLTEKEIKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQYQTPNDESAK 246

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            K +      L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ 
Sbjct: 247  KYLW---RVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVM 303

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ VI+Y
Sbjct: 304  VGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQY 363

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            VQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +      
Sbjct: 364  VQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQI 423

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            DD  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +      
Sbjct: 424  DD--FKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG-- 479

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612
             +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + LL
Sbjct: 480  LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILIQVKKDLGINIDIEKIPFDDQKVFELL 539

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+ 
Sbjct: 540  SQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQ 599

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ F
Sbjct: 600  YLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHF 659

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  +
Sbjct: 660  IEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANIL 719

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + + 
Sbjct: 720  SNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKV 779

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +   
Sbjct: 780  IVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDG 839

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
               +E++       +F       + K   E       ++  + E+  LGFY S HP+D  
Sbjct: 840  DLNIEQD-----GFLFD----ILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD-- 888

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                         +         I +       +Q +T+ G  + +VT ++  +  +   
Sbjct: 889  -KKFVAKQYLTIFKLSNAQNYKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLDGVI 945

Query: 1032 FP 1033
            FP
Sbjct: 946  FP 947


>gi|254441785|ref|ZP_05055278.1| DNA polymerase III, alpha subunit subfamily, putative [Octadecabacter
            antarcticus 307]
 gi|198251863|gb|EDY76178.1| DNA polymerase III, alpha subunit subfamily, putative [Octadecabacter
            antarcticus 307]
          Length = 1102

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 247/1048 (23%), Positives = 449/1048 (42%), Gaps = 83/1048 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +V L + + +S L GA    ++     A     +A+ D N L   +    +   A ++P
Sbjct: 28   RYVELGLCTCFSFLRGASDAVDLAQAAWALGYDCLAVADINTLAGVVRIWSQGRKAALRP 87

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-----Q 124
            +IG ++++   +                  ++  +  + Y RL  L+S+  + D     Q
Sbjct: 88   LIGARVELVSGEAF----------------LVYPTDRQAYGRLSRLISKGRMADVDGNWQ 131

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K +  + LS L     +GLI++          A   +  +   + L    K      Y+
Sbjct: 132  TKGACDLTLSDLA-THADGLILI----------AVPSDDVEAYGRGLKRLCKALPQMRYL 180

Query: 185  NLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQ 242
                 +RG D  R +++  LA  H L L+A+N  L+ + +     D++  +    T+V  
Sbjct: 181  AASYLYRGDDHARINRLDALAGQHGLRLLASNEVLYHAPDRRPLQDIMTCIREHCTLVDA 240

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
              R +   + +LK+ +EM  +F+  P A+  T ++A   +F L   +   P  +  +   
Sbjct: 241  GSRLQPNAERHLKSPAEMQRLFTQWPHAIRATRDVADAIAFDLGELSYEYPSEVIPQDM- 299

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                 +  L      G   R   G       A   +  L  EL +I ++  + YFL + D
Sbjct: 300  ---TPQEYLEKLIWKGAAWRYPDGV------ADAIKAVLRKELAMIEKLDIARYFLTIHD 350

Query: 363  FIQWAKKNNIP--VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             I +A+    P  +  GRGS A S   Y L IT +DP + SLLFERF++ +R   PD D+
Sbjct: 351  IIDFARNVAQPEILCQGRGSAANSAVCYVLGITAVDPTQHSLLFERFISEERREPPDIDV 410

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EVI+++  KYG ER     T    + ++A+R+VG+++ +       + K I 
Sbjct: 411  DFEHERREEVIQHIYTKYGRERAGLCATVIHYRPRSAIREVGKSMGLSEDVTGAMAKTIW 470

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                  V      + +R     ++DP + R + ++ +L G+ RH   H  G ++ +R L+
Sbjct: 471  GSWGRDVD----GEHAREAGLDMSDPVLRRTVLLAGQLIGMPRHLGQHVGGFILTERALT 526

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
            + VP+      +    +++   I+  G++K D L L  LT ++KS DF++     K  L+
Sbjct: 527  ETVPIGNGAMPERTFIEWDKDDIDALGILKVDILALGMLTCIRKSFDFISAHYGTKFTLA 586

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             +P +D   Y +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI   +
Sbjct: 587  TVPQEDPRVYGMLCKGDSIGVFQVESRAQINMLPRLRPRTFYDLVIEVAIVRPGPIQGDM 646

Query: 660  VYNNRKNGKEK--IVSIHP-------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            V+   +    +  I    P        +  +L  T GV I+QEQ M++A   + +S +EA
Sbjct: 647  VHPYLRRRNGEEVITYSSPGPPHDPAELKNILGRTLGVPIFQEQAMKVAIEAAEFSPAEA 706

Query: 711  DVLRRAMGKKI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            + LR+AM     +  ++  +++ +    + G  +  A   F+ +  F +YGF +SHAA++
Sbjct: 707  NELRKAMATFRSRGTIELLQDKMVGRMVRRGYDEDFAQRCFDQIKGFGEYGFPESHAASF 766

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            A + Y ++W+K HYP  F AA +  +        +  +DA+   ++I PP VN    D  
Sbjct: 767  AQLVYVSSWLKCHYPDAFCAALLNSQPMGFYAPAQLVRDAKDHGVEIRPPDVNYSHWDST 826

Query: 830  VG----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            +        +   L  I G     A  ++ A  D PF  L+    R     L    +  L
Sbjct: 827  LEPSQDGFALRLGLRQITGFQIDAATRLVNAR-DAPFRDLKALQDRAS---LTAPHVRRL 882

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              A AL      R Q L     ++                +F   +    +         
Sbjct: 883  AQADALRSMFLDRRQALWDASALRDAPD----------LPLFQGTRDEGKEAPV--ALPA 930

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
                 +   + + L      HP+   +  L   G     +   +     I +A +V+ +Q
Sbjct: 931  MPVCEQVVADYQTLRLSLKKHPMAFLRRSLATQGYTDCTQLKTSRAWQKISMAGLVLIRQ 990

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  + KG  + ++T  +         +P
Sbjct: 991  RPGSAKG--VCFITIEDEFGVANLVVWP 1016


>gi|257898944|ref|ZP_05678597.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
 gi|257836856|gb|EEV61930.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
          Length = 1103

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 319/1028 (31%), Positives = 509/1028 (49%), Gaps = 56/1028 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     GIQPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++                 ++       GYQ+L++L SR  + ++      
Sbjct: 63   IGLHLSYTYEE-------------KNYGLLAYAKDETGYQQLMKLSSRKMIQEK------ 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRH 189
            + L  + E  T+ L+ +   +   +  AF  N  +          + +F    Y+ L  +
Sbjct: 104  MALDDMIE--TDHLVFVVPANHS-VSEAF--NKEEHFFSHWQFLLENVFAKDFYIGLSEN 158

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                     +  Q       PL A +    L +ED  A +V+  +   + +  +      
Sbjct: 159  TPDQ---LPEWYQYVTKENYPLCALHPIASLQQEDLFALEVMKHIKEGSQMPLESLSAPL 215

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P       SE   I       L   V  A+R +  +        + +        K+   
Sbjct: 216  PSANGYLLSEQEMIKRFEEAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPQGKQAGE 275

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR    + +E R+         + ++YR+RLD+EL+VI +M F  YFLIV D + +A +
Sbjct: 276  YLRELCYSQVEHRIVD-------YTKEYRERLDYELSVIHQMGFDDYFLIVWDVMAFAHR 328

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D   +RR+E
Sbjct: 329  NKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPDNRREE 388

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN     ++ 
Sbjct: 389  VLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLKITLTQ 448

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                   +  E   A      L + +  LEGL RH STHAAG+VI DR L +LVP+ R  
Sbjct: 449  A-YKTSRQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDRNLLELVPLQRGS 507

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
                    + M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  IP +D +T
Sbjct: 508  DEAFLTQ-YTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGQEIRLKEIPLNDAKT 566

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  RK GK
Sbjct: 567  LLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNIDTFIARKKGK 626

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK K+ +D++
Sbjct: 627  EAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKDVLDEE 686

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K  F+SGA + G S+  AV ++E + KFA+YGFN+SHA AY+ + +Q A++K H+P  F 
Sbjct: 687  KSHFVSGALQQGYSEKTAVTVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHHPGAFF 746

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGT 847
             + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L AIKG+  
Sbjct: 747  TSLMNSVRHNTTKLKEYIAEARKNKLKLSSPSINQSNYSFELVNKEEIRFGLTAIKGIRR 806

Query: 848  TTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 ++     + PF S++ F  R+D + L   +L+SL   G  D    +R QL+  L+
Sbjct: 807  DFVEDVLNERKQNGPFKSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQLMLDLE 866

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
               +   +     +    ++           +  E+ +      R + E+  LG Y SGH
Sbjct: 867  GKIQNIVY-----SGGSLDLLGIM------ALKEEEVADYTLEERLKLEEEYLGVYLSGH 915

Query: 967  PLDVYKPILRKMGIKGYEESV-ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            P         ++ +    + +   +    + L  M+   ++ +T+KG  + +V  ++ + 
Sbjct: 916  P----AEGFDRLRLAKQVQLITDIVPNQPVNLLLMIKEVREIRTKKGELMAFVEGTDSSG 971

Query: 1026 EYEANFFP 1033
            E     FP
Sbjct: 972  EISVTVFP 979


>gi|313884090|ref|ZP_07817856.1| DNA polymerase III, alpha subunit [Eremococcus coleocola
            ACS-139-V-Col8]
 gi|312620537|gb|EFR31960.1| DNA polymerase III, alpha subunit [Eremococcus coleocola
            ACS-139-V-Col8]
          Length = 1113

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 295/1023 (28%), Positives = 493/1023 (48%), Gaps = 42/1023 (4%)

Query: 15   QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             V S+YS  +  + + + + +  A    A+ + D  NLF+A EF Q +   GI+ ++G  
Sbjct: 3    NVKSTYSFNQATILVKDYVQQAKAMGYQAVGLADQGNLFAAYEFYQASQVFGIKAVLGLT 62

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            + +           G          ++     +GYQ LI+L SR+ +  Q + S ++ L+
Sbjct: 63   VSL----------PGLIDDQKAWPALIYAIDQKGYQGLIKL-SRL-MSHQKEYSNQLYLN 110

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQRHRGYD 193
             L +     L+ ++ G    +D     +  + A+  L   +++FG+  +Y+  Q    ++
Sbjct: 111  CLSDY-KGHLVYISRGHDSELDSLVLHDQIKEAQDLLKQLREIFGEDKVYLGHQ-ILPFN 168

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +     +   A + +L  V+T     L +ED  A  +L            D         
Sbjct: 169  QIVTRHLSDFAKSMDLKQVSTQPVRLLQQEDVMALTILKRRVDRAAYEPLDLTNFGQRSE 228

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
                S            L   +  + +    L+         +           +  L+ 
Sbjct: 229  KVLLSRKDLEDLYQHYGLVEIISNSDQLMTRLEFKLQEGKDLLPVFDSGSLLTSQEYLKQ 288

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
                 L                 Y++RL +EL+VI +M +  YFLIVAD + + ++++I 
Sbjct: 289  LVTQALNQFGL-------AAKNTYQERLAYELSVIHQMGYDDYFLIVADIVSYCRQHHIQ 341

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            +G GRGS  GS+  Y L ++ IDPL++ L+FERFLNP+R +MPD D+D     RD+VI Y
Sbjct: 342  LGAGRGSAPGSLVTYLLGVSTIDPLKYDLIFERFLNPERQTMPDIDLDIPNSHRDQVIAY 401

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQAI 492
            V+ KYG+E+VAQI TF    AK+A+++V R +    SQ+    KLIP DP   +   QA 
Sbjct: 402  VRQKYGYEQVAQIATFNRFGAKSAIQEVLRQVGQD-SQLKTWSKLIPTDPNRKIDLGQAY 460

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
             ++  FR    A P+   + +  Q LEGL    S HA G+VI D P+  ++P+       
Sbjct: 461  QENKSFRHLVDASPTNQAIFQAGQALEGLISEHSIHAGGLVITDFPIDSMIPVL--EEGQ 518

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
              +TQF+   +E  GL+K D L LK LTLL + L  +  +    ++  I  +DHET  L 
Sbjct: 519  SLITQFDKDGVENLGLLKIDLLALKNLTLLDQILQEVKVKDQAFEIEDIDLNDHETLQLF 578

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
                T G+FQ ES G+R  L  +QP   EDI+A+ +L+RPGP+  I  Y  RK+G+ +  
Sbjct: 579  RRAQTRGVFQFESPGIRNVLSQLQPTSFEDIVAVNALFRPGPMGQIQTYIKRKHGQYQAT 638

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
               P ++ +LK+T G+IIYQEQVMQI   ++G+++ +AD+LRRAM KK  E M  QK  F
Sbjct: 639  YPVPELEGILKDTYGIIIYQEQVMQILVSMAGFTMGQADLLRRAMSKKDHEVMQAQKVNF 698

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            ++GA + G  +  A  +++ +A+FA+YGFN+SHA  Y+ +++Q A++K HY   F    +
Sbjct: 699  LTGALEKGYEEKTASQVYDAIAEFANYGFNRSHAVVYSKLAFQLAYLKVHYSQAFFLGQL 758

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
              +     +++ + ++ +   I+I+   VN   +      N +      +KG+     R 
Sbjct: 759  KFDPT---QMQAYLEEIKAAGIKILTLDVNKSQMGVSANGNDLRLGFQMVKGIRPDLMRE 815

Query: 853  IMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I++      P+    DF  R+  K L    LE L+  GA D  GY+R  LL +L+ + + 
Sbjct: 816  IIDNRQLMGPYQDFFDFLRRLPDKYLQVTPLEILIKVGAFDSLGYNRATLLTNLEKVIES 875

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
             ++   N      ++F            +E  +  N       E+  LGFY SGHPLD Y
Sbjct: 876  VRFSGLN-----MDLFEEM------APKIETVAELNPLQLIHQEKEHLGFYLSGHPLDFY 924

Query: 972  KPIL-RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            +  L  ++ +    +       +  RL  ++   +  +TR+G  + +    + + + +  
Sbjct: 925  RDNLNAEINLMNISQIKKEEPKSPFRLLGIISRIKLTQTRQGQTMAFAQIEDESGKLDQV 984

Query: 1031 FFP 1033
             FP
Sbjct: 985  LFP 987


>gi|227515187|ref|ZP_03945236.1| possible DNA-directed DNA polymerase [Lactobacillus fermentum ATCC
            14931]
 gi|227086519|gb|EEI21831.1| possible DNA-directed DNA polymerase [Lactobacillus fermentum ATCC
            14931]
          Length = 1099

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 330/1027 (32%), Positives = 508/1027 (49%), Gaps = 63/1027 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L V S YSLLE  +    ++         A+ + D   L+ A+ F ++A  AG+ P+
Sbjct: 3    FVPLAVKSMYSLLEAPVRPAELVAVAKERGYQAVGLVDARVLYGAVNFVRRANQAGLHPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L +   +                 + LL   A GYQ L  L +R       +    
Sbjct: 63   IGVSLPLTFAEG-------------TLDVTLLAKGAVGYQNLTRLSTRAMTDRANQ---P 106

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + +  L+E+ ++ L+++         +      S+    +L           Y+ +  + 
Sbjct: 107  LTIEDLREV-SDDLVVIVA------PQLMLLGVSEQTYAQLGEVAD------YLGI--NL 151

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRPRVT 249
             +       +  +A    LPL+A     +L+E+DY A  VL A+     +       + T
Sbjct: 152  DFTAAERQDLQAVAERCGLPLIAFEPVEYLNEDDYFATQVLRAIKAGHTIEDPLKASQRT 211

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              H+L+   E+ + +     A      +A      +          +        +   +
Sbjct: 212  GRHWLRPAEEVAAAYRAAGLAEAAAQTVAVAERCQVHFAD--QTPVLPAFPTPAGQGVAD 269

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR     GL  R   G         +Y+ RL+ EL VI +M F  YFLIV D + +A +
Sbjct: 270  YLRELCQRGLAKRKLAG------DPAEYQARLEHELTVIHQMGFDNYFLIVWDLMNFAHQ 323

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            + I  GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLNP+R  MPD D+D   +RR+E
Sbjct: 324  HQILTGPGRGSAAGSLVAYALAITDVDPLQYGLLFERFLNPERAQMPDIDLDLPDNRREE 383

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V+ Y+ + YGHERVAQIITFGSL  K  LRDV R   +P  QVD L ++I        +L
Sbjct: 384  VLNYLHHHYGHERVAQIITFGSLGTKQVLRDVSRVFNLPKYQVDSLSQVIDRVKGPHQTL 443

Query: 490  QAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              + + ++  +        V  LLE++ KLEGL RH S HAAG+V+   PL + VP+   
Sbjct: 444  ADLLESAQPVQNLARDSKLVACLLEVAAKLEGLPRHDSIHAAGVVLAAEPLIKTVPLQAG 503

Query: 549  VRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
                 + VTQF    +E  GL+K D LGL+ LT ++ +L+ + Q     DL+ I  +D  
Sbjct: 504  NEPGAMLVTQFEKDTVESLGLLKIDLLGLRNLTTVETALNLIHQHQPDFDLTHIALNDRP 563

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T GIFQ ESSG+RQ L  + PD  E+I+A+ +LYRPGP+DNI  +  RK G
Sbjct: 564  TLALFDRGQTSGIFQFESSGIRQTLVNLHPDNFEEIVAVNALYRPGPMDNINHFIARKKG 623

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E +      + P+L  T G+++YQEQVMQ+A ++ G+SL EAD+LRRAM KK    M  
Sbjct: 624  QEAVNLPAKELAPILAPTYGILVYQEQVMQVAAVMGGFSLGEADLLRRAMSKKKLATMAS 683

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             KE F++GA+K G S  +A  +F  + +FA+YGFN+SHA AY+ ++++ A++K H+P EF
Sbjct: 684  MKEAFLAGANKRGYSNAVAEQVFAYIDQFANYGFNRSHAVAYSKMAFEMAYLKVHFPAEF 743

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            LAA M  +  +  K+  +  +A+Q  I    P++N       + D  ++  L  IKG+  
Sbjct: 744  LAALMETD-PDTSKVWAYFSEAKQLGITTHGPAINQSQERVSLVDQELWLGLDMIKGLRR 802

Query: 848  TTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               R I+E      P+  L D  +R+D+K     +   L+ AGALD  GY+R ++ + L 
Sbjct: 803  DFIRAIIEERNQHGPYQDLPDLVNRLDAKWHKEALFVPLIDAGALDHLGYNRAEMAEGLK 862

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             I + A++                         + + +    +VR   E  VLG Y SGH
Sbjct: 863  AILEGAEYA---------------GLGLGMAPVVAQRNEYPLAVRLAREHAVLGTYLSGH 907

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG-SRIGWVTFSEPAK 1025
            P+  Y+ +  K+ +    +         +RL  MV   ++  T++    + ++T S+   
Sbjct: 908  PVSQYQDLRTKLKLPTVAQL---RPNQRVRLVLMVTRMRKVTTKREHKPMAFLTASDETG 964

Query: 1026 EYEANFF 1032
              E   F
Sbjct: 965  AVEVTIF 971


>gi|115380095|ref|ZP_01467134.1| error-prone DNA polymerase [Stigmatella aurantiaca DW4/3-1]
 gi|115362901|gb|EAU62097.1| error-prone DNA polymerase [Stigmatella aurantiaca DW4/3-1]
          Length = 984

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 271/1008 (26%), Positives = 448/1008 (44%), Gaps = 75/1008 (7%)

Query: 33   LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92
            +   A    PA+A+TD + L+  ++    A   G++ I+G +L +               
Sbjct: 1    MATAARLGLPALALTDGDGLYGVVKAHLAAREHGLKLILGTELTLT-------------- 46

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                P +V+    A GY  +  LVS   +    K    +    + E  +EGLI L    +
Sbjct: 47   --EGPPVVVYAMDAGGYANMCRLVSASRMA-HPKGETGLPWREVAER-SEGLIALLPHPA 102

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPL 211
                            +++    + F  R +V L R     D  RE++   LA    +PL
Sbjct: 103  PI--------------EQVGGLAEAFPGRFHVGLCRTLSAGDGPREARAEALARELGVPL 148

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
             A N+            DVL A+ H T V +   R     +  LK+ +EM  +F D PEA
Sbjct: 149  CAHNDVHVHHRRRQPLQDVLTAIRHKTTVDKAGTRLLPNAERTLKSPAEMARLFRDRPEA 208

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
            +E T+EIA+RC   L                         LR     GL VR   G    
Sbjct: 209  IERTLEIAQRCHATLDDLRYHFSEEDLPPG----LTAMGHLRQLTEEGLGVRYPAGV--- 261

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                 + R++++ E+ +I  + F GYFL + D +++A+   I    GRGS A SV  YAL
Sbjct: 262  ---PPEVRKQVEHEMRLIEALDFPGYFLALWDIVRFARSRGIL-CQGRGSAANSVVCYAL 317

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             +T IDP+R  LLFERFL+ +R   PD D+DF  +RR+EV++YV  K+G  R   +  F 
Sbjct: 318  QLTAIDPVRMGLLFERFLSMERKEPPDIDVDFEHERREEVLQYVYEKHGRHRAGMVCEFI 377

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
              + + ALR+VG++L +   QVDRL K+        V+ + + +          D  V +
Sbjct: 378  CYRGRLALREVGKSLGLSLDQVDRLSKVAAA-SGFEVTPEVLVE----AGLSAFDSRVRQ 432

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
             L +++++EG  RH S H  G VI   PL  L+P+         V Q+        G++K
Sbjct: 433  TLTLAREMEGFPRHVSIHVGGFVITREPLVDLIPVENAAMKGRTVIQWEKDDTNALGVLK 492

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
             D L L  LT + K L  + +   +   L+ IP +D + Y +L    T+G+FQ+ES    
Sbjct: 493  VDLLALGMLTAVSKCLALIREHFGRELSLATIPPEDPKVYDMLCEADTVGVFQIESRAQM 552

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK--IVSIHPLIDPMLKETQG 687
              L  ++P    D++  ++L RPGPI   +V+   +    +       P +  +L++T G
Sbjct: 553  NMLPRLKPRTFYDLVIEIALIRPGPIVGNMVHPYLRRRNGEEVPTYPTPDVQAILEKTLG 612

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIA 746
            V ++QEQ M++A + +G++  EAD LRRA+G K+ ++ ++  + RF+ G  K G      
Sbjct: 613  VPLFQEQAMKLAMVAAGFTAGEADGLRRALGHKRAEQLLEPYRMRFVEGGRKRGYPAAYM 672

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +F     FA YGF +SH+A++A+I+Y ++W+K HYP  F  A +  +           
Sbjct: 673  EELFAQFRGFAHYGFPESHSASFALIAYASSWLKCHYPQAFTTALLNSQPMGFYAPHTLV 732

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             DAR+  +++ P  V     D  + +   +   L  ++G+G    + +  A A   F  L
Sbjct: 733  ADARRHGVEVRPVDVRHSGWDCTLEEGGALRLGLRMVRGLGEAAGKRVAAARAGG-FSCL 791

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             D   R    ++ R  L  L  AGAL     SR Q L  +  +               ++
Sbjct: 792  GDVARRT---RIPRHELTRLALAGALASLCGSRRQALWEIQAL----------GPLDADD 838

Query: 926  IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
            +F       +      +      + R   +   +G     HPL++ +P LR +G    E 
Sbjct: 839  LFFGMSMDGTQ----VELPPMGVAERVTADYETVGLSLEKHPLELLRPTLRTLGAVSAEG 894

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  G  + +  M++ +Q+  T +G  + +++  +          P
Sbjct: 895  LQRVSSGRRVAVGGMLICRQRPPTARG--MCFLSLEDETGIANLVVPP 940


>gi|299535454|ref|ZP_07048776.1| DNA polymerase III subunit alpha [Lysinibacillus fusiformis ZC1]
 gi|298729215|gb|EFI69768.1| DNA polymerase III subunit alpha [Lysinibacillus fusiformis ZC1]
          Length = 1027

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 344/1021 (33%), Positives = 535/1021 (52%), Gaps = 48/1021 (4%)

Query: 17   HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN-LFSALEFSQKACAAGIQPIIGCQL 75
            H+S  LL+  + L  ++  +   +  A AI   N  L+  L F +    A I  +IG  +
Sbjct: 9    HTSADLLKSTIRLEQLIPFLQEQKTQACAI--VNTKLYGLLPFCKALQQANIHAVIGLSV 66

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            ++   D                 +VL   T EGYQ L+++ S + +         +   W
Sbjct: 67   NVQWHDKKLP-------------LVLYARTQEGYQHLLKISSAISIRQDD----VLPWKW 109

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY 195
            L+      + +L+      +            +  +    +LF    Y+ + R  G    
Sbjct: 110  LEGYSAGCIALLSSDDLTDV---------DDWQAMVSALFQLFNHHFYMGIARPGGIKAE 160

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
            +E   V     H + LVA+ +  FL  ED+ A++V  A+     +    +      ++  
Sbjct: 161  QEDDFVSWCEGHAIALVASQSCYFLRPEDHFAYEVARAIDTGEKLGNTMQTADVQGYFAP 220

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
               E  + F+D P+ L+ + ++   C   L      +P+F   E +      E+ L  +A
Sbjct: 221  TVFEWQNWFADRPDWLDASTKMLACCKADLPKMPVQMPKFPVPEGE----TAESLLVKEA 276

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
              GLE R  Q AI        Y +RL +EL +I  M F+ YFLIVADF+++AK+N I  G
Sbjct: 277  FTGLEERFKQLAI-----PVAYHERLQYELEIICSMGFADYFLIVADFMRYAKENRILTG 331

Query: 376  PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
            PGRGS AGS+ AY+L+IT +DPL + LLFERFLNP+R+++PD DIDF   +R +VI+YV 
Sbjct: 332  PGRGSSAGSLVAYSLSITQVDPLAYGLLFERFLNPERITLPDIDIDFVDSKRHQVIQYVA 391

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
             KYG   VAQIITFG+L AKA  RDV R        ++++ K+IPN P   +  +A+A+ 
Sbjct: 392  QKYGKANVAQIITFGTLSAKAVARDVARVFGFDAEMLEKISKMIPNKPGITL-QRAVAES 450

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
              F+     +    R  E++ KLEGL R++S HAAGIVI   PL   VP+  +    +  
Sbjct: 451  QDFQGWLAENDKHLRWYEVALKLEGLPRNSSIHAAGIVIAPSPLVNTVPIE-EGHDGIYS 509

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTT 614
            TQ+ M  IE  GL+K DFLGL+ LT+L++         G  ++   IP  D +T+ LL  
Sbjct: 510  TQWPMGDIEACGLVKMDFLGLRNLTILEQIRWSIYKAGGPWIEFERIPMHDDKTFQLLQR 569

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
              TLGIFQLES GM+QAL  + P    DI+A+ +LYRPGP+D I VY  RK G+E +   
Sbjct: 570  GDTLGIFQLESDGMKQALRDIGPTSFLDIVAVNALYRPGPMDFIPVYAKRKAGREMVTMP 629

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            HP+++P+L+ET GVI+YQEQ+++IA +L+G+++ +AD+LRRA+ KK ++ +++Q+  F+ 
Sbjct: 630  HPVLEPILQETFGVIVYQEQIIKIASVLAGFTMGQADLLRRAVSKKNRQVLEEQRTAFVQ 689

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            GA + G  + +A  ++EL+ +FADYGF KSHA AY+VISYQ A++K H+P  F AA ++ 
Sbjct: 690  GALRQGFEQHLAEEVYELIVRFADYGFPKSHAVAYSVISYQMAYLKAHFPQSFYAALLSN 749

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
               NVEKI++F  +A+   I   PPS+      F V +  I YSL+ IKGV  T    I 
Sbjct: 750  ATGNVEKIQQFVHEAKDKGIPFYPPSLKNSTKYFTVENEGIRYSLSGIKGVPHTFIEKIH 809

Query: 855  EASADKP--FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
                  P   ++L D    + ++    +VLESL++AGALD     R  L+ +++   K A
Sbjct: 810  GLRQTNPEVLNNLFDLAVALSAQHFKPKVLESLIYAGALDYLERDRAVLIMTVEAALKQA 869

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
            + +            A        K    +    +   +  +E+  LGFY S HP+   +
Sbjct: 870  ELLRPTEDID----LASAMAFSFGKPKYMQAGAMSQKEKLMHEKESLGFYISTHPVAQER 925

Query: 973  PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   +      E      G +I++  ++   ++ +T+KG ++ +V   +        FF
Sbjct: 926  LLWTDINS-TCRELRQKRDGTSIKMIGLIEEVKKIRTKKGEQMAFVQLQDEFGTVSITFF 984

Query: 1033 P 1033
            P
Sbjct: 985  P 985


>gi|91976380|ref|YP_569039.1| error-prone DNA polymerase [Rhodopseudomonas palustris BisB5]
 gi|123762868|sp|Q139V1|DNAE2_RHOPS RecName: Full=Error-prone DNA polymerase
 gi|91682836|gb|ABE39138.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisB5]
          Length = 1110

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 246/1070 (22%), Positives = 428/1070 (40%), Gaps = 98/1070 (9%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K P++  + V +++S LEG     + + + +     AI I D N L   +    +     
Sbjct: 2    KVPAYAEIGVTTNFSFLEGGSHPQDYVHEASRLGLEAIGIADRNTLAGVVRAYSELGNED 61

Query: 67   I----QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
            +    + +IG +L                     P ++        Y RL  L+S   L 
Sbjct: 62   LIHKPRLLIGARLVFADG---------------TPDVLAYPVDRAAYGRLCRLLSVGKLR 106

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
               K    + ++ L+   ++GL          +    +   +      L     L    +
Sbjct: 107  GA-KGECHLAVADLEAF-SQGL--------SLVLMPPYRFQASAIAAALQRLTALESGGV 156

Query: 183  YVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV-V 240
            ++ L   +RG D+ R +++ ++A+   +P +ATN+ L+   E     DVL  V   T   
Sbjct: 157  WLGLTPYYRGDDKRRLARLKRVAWAARVPGIATNDVLYHHPERRALQDVLSCVREKTTID 216

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                R     + +LK  +EM  +F   P+A+  T+  A   SF L       P       
Sbjct: 217  KIGRRLEANAERHLKPAAEMARLFRADPDAIAETLRFAAGISFTLDELKYHYPDEPVPPG 276

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                K  +  L +    G+      G       +      +D EL +IA   ++ YFL V
Sbjct: 277  ----KTAQQHLEDLTWEGVAEYFPAG------ISDKLHATIDKELGIIAHRGYAQYFLTV 326

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +++A+  +I    GRGS A S   Y L IT +DP    LLFERF++ +R   PD D+
Sbjct: 327  HDIVRYARSQDIL-CQGRGSAANSAVCYVLGITCVDPTEIDLLFERFVSEERDEPPDIDV 385

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR+EV++Y+  +YG  R A + T    + ++A+RDVG+AL +       L   + 
Sbjct: 386  DFEHSRREEVMQYIYRRYGRHRAAIVATVIHYRPRSAIRDVGKALGLSEDVTAALADTVW 445

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                  ++   +            +P + R +E++ +L G  RH S H  G V+    L 
Sbjct: 446  GSWGKGLNEMQVKQ----AGLDPHNPLIGRAVELATELIGFPRHLSQHVGGYVLTQDRLD 501

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL-- 598
              VP+           +++   I+   ++K D L L  LT ++K  D +AQ         
Sbjct: 502  SYVPIGNAAMEGRTFIEWDKDDIDAIKMMKVDVLALGMLTCIRKGFDLIAQHKGVRYALS 561

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             +   DD+  Y +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGPI   
Sbjct: 562  DIKSEDDNAVYQMLQRGESIGVFQVESRAQMNMLPRLKPKCFYDLVIEVAIVRPGPIQGD 621

Query: 659  VVYN--NRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            +V+    R+N +E +V   P         ++ +L +T GV ++QEQ M+IA   + ++  
Sbjct: 622  MVHPYLRRRNKQEPVVYPAPAGHAGDANELEVILGKTLGVPLFQEQAMRIAIEAAHFTPD 681

Query: 709  EADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            EA+ LRRAM        + K + + +      G     A N FE +  F  YGF +SHAA
Sbjct: 682  EANQLRRAMATFRNVGTIGKFESKMVGNLVARGYDPVFAKNCFEQIKGFGSYGFPESHAA 741

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            ++A + Y +AWMK  +P  F  A +  +        +   DAR   +++ P  V+     
Sbjct: 742  SFAKLVYVSAWMKCEHPDAFCCALLNSQPMGFYAPAQIVGDARANEVEVRPVDVSFSDGQ 801

Query: 828  FKVGD-----NRIYYSLAAIKG-VGTTTARHIMEASAD-----------------KPFDS 864
              + +     + +      I G V        +   A                   PF+S
Sbjct: 802  CTLEERCGKHHAVRLGFRQIDGFVWADPDEERVRREAGLLPSEDWAARIVAARARGPFNS 861

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            LE F        L +R L  L  A A    G  R   L ++  +                
Sbjct: 862  LERFAR---LTALPKRALILLADADAFRSLGLDRRAALWAVRRLPDDV----------PL 908

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
             +F     +              ++     + + +     GHP++  +P+     +    
Sbjct: 909  PLFEAASASEQLDENAAPLPQMPTAEHVVADYQTVRLSLKGHPMEFLRPLFAAERVVTCR 968

Query: 985  ESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                +   G  +R A +V+ +Q+  + KG  + ++T  +         +P
Sbjct: 969  SISESRVSGQRMRCAGVVLVRQRPGSAKG--VVFITLEDETGIANLVVWP 1016


>gi|74316846|ref|YP_314586.1| DNA polymerase III subunit alpha [Thiobacillus denitrificans ATCC
            25259]
 gi|74056341|gb|AAZ96781.1| DNA polymerase III, alpha subunit [Thiobacillus denitrificans ATCC
            25259]
          Length = 1023

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 271/1033 (26%), Positives = 441/1033 (42%), Gaps = 78/1033 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S+++ L GA     ++ + A     A+A+TD  +L   +     A A G++ I
Sbjct: 3    YAELHCLSNFTFLRGASHPEELVARAAELGYAALALTDECSLAGVVRAHTAAKACGMKLI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +  +                     +V+L +   GY  L   ++     +  K   R
Sbjct: 63   VGSEFTLV----------------EGLRLVVLATDRAGYGALSAFITHGR-RNALKGRYR 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L  L   G      L G     +           A + +      F  R ++  +R R
Sbjct: 106  LGLDDLLASG------LPGCLVVLLPEPLPT--LAQARQIVAR----FPRRAWLAAERFR 153

Query: 191  G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               D  R + + +L     LP VA  +            D L A+     +++       
Sbjct: 154  ASDDAARLAALDELGEAAGLPRVAAGDVHMHVAGRRALQDTLTAIRLGVPLAEAGAALH- 212

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P+     R+            L  T+ +A RCSF L       P  +  E +       +
Sbjct: 213  PNGERHLRAPSDLATLYPAAWLAETLVVAARCSFSLDELRYEYPEELVPEGE----TPIS 268

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR     GL  R   G           R  ++ EL +I  +++  YFL V D +++A+ 
Sbjct: 269  HLRRLTEDGLVRRFPDG------PPAKVRTLVEHELALIEELRYEPYFLTVHDIVRFARS 322

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A S   YAL IT+++P    +LFERF++ +R   PD D+DF  +RR+E
Sbjct: 323  RGIL-CQGRGSAANSAVCYALFITEVNPACMDMLFERFISKERNEPPDIDVDFEHERREE 381

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI+Y+  KYG +R A   T  + + K+ALRDVG+AL     QVDRL +         V+ 
Sbjct: 382  VIQYLYTKYGRDRAALAATVITYRPKSALRDVGKALGFDLDQVDRLARSTSWWDGRKVAP 441

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            Q + +         A P V  LL+  ++L G  RH S H  G VI    LSQLVP+    
Sbjct: 442  QRLVE----AGFDPAHPKVRLLLDRVEELLGFPRHLSQHVGGFVIARGQLSQLVPIENAA 497

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHET 608
              +  + Q++   ++  GL+K D L L  L+ ++++LD     RG +++LS IP +D   
Sbjct: 498  MPERTIIQWDKDDLDALGLLKVDVLALGMLSAIRRALDELGRLRGRRLELSDIPSEDPAV 557

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKN 666
            Y +L    T+G+FQ+ES      L  M+P    D++  V++ RPGPI    I  Y  R+ 
Sbjct: 558  YDMLGRADTIGVFQIESRAQMSMLPRMRPRNFYDLVIEVAIVRPGPIQGGMIHPYLRRRQ 617

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM- 725
            G E +      +  +L+ T GV I+QEQVMQ+A + +G++  EAD +RR+M    +    
Sbjct: 618  GLEPVTYPSEAVRGVLERTLGVPIFQEQVMQLAIVAAGFTPGEADQVRRSMAAWRRRGGL 677

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +  + R I G  + G  ++ A  IF+ +  F +YGF +SHAA++A++ Y +AW+K H P 
Sbjct: 678  EHFERRLIDGMRERGYDESFAQQIFQQILGFGEYGFPESHAASFALLVYVSAWLKRHEPA 737

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRIYYSL 839
             F  A +  +        +  QDAR+  ++++   V     D  +          +   L
Sbjct: 738  AFTCALLNSQPMGFYAPAQLVQDARRHAVEVLSVDVTASAWDCTLEPAAGSRKPALRLGL 797

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
              +KG+       +  A A +PF S+ED   R     L  R L+ L  AGAL      R 
Sbjct: 798  RMVKGLSLECGARVAAARAQQPFASVEDLARR---GGLAPRDLKHLARAGALAALSGHRR 854

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            Q    +  I++ A        +                    +    +       +   L
Sbjct: 855  QAAWQVAGIEQNAPLALDVSEDVQ-----------------PELLPLSEGQDVAADYAAL 897

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G     HPL + +P+L +  +   E       G     A +VV++Q+  T  G  + ++T
Sbjct: 898  GLTLGRHPLALLRPLLARRRLAPAEALGRLAHGRFACTAGLVVTRQRPGTASG--VTFLT 955

Query: 1020 FSEPAKEYEANFF 1032
              +         +
Sbjct: 956  LEDETGPTNVIVW 968


>gi|184155343|ref|YP_001843683.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            fermentum IFO 3956]
 gi|183226687|dbj|BAG27203.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            fermentum IFO 3956]
          Length = 1099

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 330/1027 (32%), Positives = 506/1027 (49%), Gaps = 63/1027 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L V S YSLLE  +    ++         A+ + D   L+ A+ F ++A  AG+ P+
Sbjct: 3    FVPLAVKSMYSLLEAPVRPAELVAVAKERGYQAVGLVDARVLYGAVNFVRRANQAGLHPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L +   +                 + LL   A GYQ L  L +R       +    
Sbjct: 63   IGVSLPLTFAEG-------------TLDVTLLAKGAVGYQNLTRLSTRAMTDRANQ---P 106

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + +  L+E G++ L+++         +      S+    +L           Y+ +  + 
Sbjct: 107  LTIEDLRE-GSDDLVVIVA------PQLMLLGVSEQTYAQLGEVAD------YLGI--NL 151

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRPRVT 249
             +       +  +A    LPL+A     +L+E+DY A  VL A+     +       + T
Sbjct: 152  DFTAAERQDLQAVAERCGLPLIAFEPVEYLNEDDYFATQVLRAIKAGHTIEDPLKASQRT 211

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              H+L+   E+ + +     A      +A      +          +        +   +
Sbjct: 212  GRHWLRPAEEVAAAYRAAGLAEAAAQTVAVAERCQVHFAD--QTPVLPAFPTPAGQGVAD 269

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR     GL  R   G         +Y+ RL+ EL VI +M F  YFLIV D + +A +
Sbjct: 270  YLRELCQRGLAKRKLAG------DPAEYQARLEHELTVIHQMGFDNYFLIVWDLMNFAHQ 323

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            + I  GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLNP+R  MPD D+D   +RR+E
Sbjct: 324  HQILTGPGRGSAAGSLVAYALAITDVDPLQYGLLFERFLNPERAQMPDIDLDLPDNRREE 383

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V+ Y+ + YGHERVAQIITFGSL  K  LRDV R   +P  QVD L ++I        +L
Sbjct: 384  VLNYLHHHYGHERVAQIITFGSLGTKQVLRDVSRVFNLPKYQVDSLSQVIDRVKGPHQTL 443

Query: 490  QAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              + + ++  +        V  LLE++ KLEGL RH S HAAG+V+   PL + VP+   
Sbjct: 444  ADLLESAQPVQNLARDSKLVACLLEVAAKLEGLPRHDSIHAAGVVLAAEPLIKTVPLQAG 503

Query: 549  VRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
                 + VTQF    +E  GL+K D LGL+ LT ++ +L+ + Q     DL+ I  +D  
Sbjct: 504  NEPGAMLVTQFEKDTVESLGLLKIDLLGLRNLTTVETALNLIHQHQPDFDLTHIALNDRP 563

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T GIFQ ESSG+RQ L  + PD  E+I+A+ +LYRPGP+DNI  +  RK G
Sbjct: 564  TLALFDRGQTSGIFQFESSGIRQTLVNLHPDNFEEIVAVNALYRPGPMDNINHFIARKKG 623

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E +      + P+L  T G+++YQEQVMQ+A ++ G+SL EAD+LRRAM KK    M  
Sbjct: 624  QEAVNLPAKELAPILAPTYGILVYQEQVMQVAAVMGGFSLGEADLLRRAMSKKKLATMAS 683

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             KE F++GA+K G    +A  +F  + +FA+YGFN+SHA AY+ ++++ A++K H+P EF
Sbjct: 684  MKEAFLAGANKRGYPNAVAEQVFAYIDQFANYGFNRSHAVAYSKMAFEMAYLKVHFPAEF 743

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            LAA M     +  K+  +  +A+Q  I    P++N       + D  ++  L  IKG+  
Sbjct: 744  LAALMETN-PDTSKVWAYFSEAKQLGITTHGPAINQSQERVSLVDQELWLGLDMIKGLRR 802

Query: 848  TTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               R I+E      P+  L D  +R+D+K     +   L+ AGALD  GY+R ++ + L 
Sbjct: 803  DFIRAIIEERNQHGPYQDLPDLVNRLDAKWHKEDLFVPLIDAGALDHLGYNRAEMAEGLK 862

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             I + A++                         + + +    +VR   E  VLG Y SGH
Sbjct: 863  AILEGAEYA---------------GLGLGMAPVVAQRNEYPLAVRLAREHAVLGTYLSGH 907

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG-SRIGWVTFSEPAK 1025
            P+  Y+ +  K+ +    +         +RL  MV   ++  T++    + ++T S+   
Sbjct: 908  PVSQYQDLRTKLKLPTVAQL---RPKQRVRLVLMVTRMRKVTTKREHKPMAFLTASDETG 964

Query: 1026 EYEANFF 1032
              E   F
Sbjct: 965  AVEVTIF 971


>gi|116492856|ref|YP_804591.1| DNA polymerase III catalytic subunit, DnaE type [Pediococcus
            pentosaceus ATCC 25745]
 gi|116103006|gb|ABJ68149.1| DNA polymerase III catalytic subunit, DnaE type [Pediococcus
            pentosaceus ATCC 25745]
          Length = 1107

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 292/1010 (28%), Positives = 514/1010 (50%), Gaps = 45/1010 (4%)

Query: 27   LSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMT 86
            + +++++         A+ +TD N ++  +EF Q      ++PI+G  L +D        
Sbjct: 19   IKIDDLIATAKNRGYQAMTLTDHNTMYGTVEFYQACIKNNLKPIVGLTLWLD-------- 70

Query: 87   NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM 146
                T      ++VL+  + +GY+ L+++ S        K    +       +    +I+
Sbjct: 71   --STTGIDNQFALVLIAKSVKGYRNLMQISSAKMTSSTPKF---VFDDIKDLLDDLIMIV 125

Query: 147  LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRHRGYDRYRESQVVQLAY 205
                    +        S  A + L  ++++ GD  LY+ +   +         ++Q+A 
Sbjct: 126  --PAQRSEMIELLERGLSGDATELLENYRQVVGDEDLYLGINLKQTN--IMRQTLMQIAE 181

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQKDRPRVTPDHYLKNRSEMVSIF 264
             H L  +   +  +L+ ED+ A  VL  +A    +   +   +   +++LK R      +
Sbjct: 182  KHSLGCLPLPSVEYLNSEDHFATQVLKDIASGEVIKHPEILAKDQGNNWLKPRDVFEKEY 241

Query: 265  SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
             D    L   ++     +  +++  P +   + K      +     L+            
Sbjct: 242  RDAG--LSELLDQLDALTSQIELKIPFVQPKLPKFPTPANQSAIQYLKELCFQ------- 292

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            Q   +K      Y+QRLD ELNVI  M F+ YFLIV D +Q+A +N+I  GPGRGS AGS
Sbjct: 293  QLEKSKNAQNLQYQQRLDRELNVIESMGFADYFLIVHDVVQFAHQNHILTGPGRGSAAGS 352

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            + AY L IT +DP+ + LLFERFLNP+R  MPD D+D   D+R+ +++YV +KYGH+ V 
Sbjct: 353  LVAYLLRITSVDPIEYGLLFERFLNPERAQMPDIDLDIPDDKRELMLKYVHDKYGHQHVG 412

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            QIITFG+L AK A+RDV R      ++++++  LIP++    +    + + S+ +E    
Sbjct: 413  QIITFGTLAAKQAIRDVARVFGEMPNKINQISALIPSELNITLERA-LENSSKLQEFIRT 471

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
                  + E +++LEGL RH STHAAGIV+ +  L++  P+  D    + ++Q++  ++E
Sbjct: 472  SEKNRFMFETARRLEGLPRHYSTHAAGIVLSENNLTETTPVQ-DGNEGMLMSQYSKNYVE 530

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            + GL+K DFLGL+ L+L+   LD + Q     D+  I  +D +T  L     T GIFQ E
Sbjct: 531  RVGLLKMDFLGLRNLSLMANILDQVHQLKPDFDIENINLNDTKTLELFQRGDTSGIFQFE 590

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            S+G+R  L  ++PD    ++A+ +LYRPGP++NI  +  RK  +E     + ++  +L E
Sbjct: 591  SAGIRNVLRKVKPDRFGLVVAVNALYRPGPMENIDRFVKRKEHREHYSFPNDVLSEILGE 650

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T G+++YQEQVM++A  + G SL +AD+LRRAM KK  + +++ +  FI GA + G +  
Sbjct: 651  TFGILVYQEQVMEVASAMGGLSLGQADLLRRAMSKKKHDVIEQMRTNFIDGALQKGYNAK 710

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +   ++  +  FA+YGFNKSHA AY+ +++Q A++KT++P  F  A +   +    K K+
Sbjct: 711  LTQQVYSYIENFANYGFNKSHAVAYSKLAFQLAYLKTYFPGPFYTALLNSVIGGEAKTKE 770

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFD 863
            + Q+  +  I++  P +N   + +     +I     +IKG+     R+++E    +  F 
Sbjct: 771  YIQELNRLGIKVKAPDINLSQLQYAFYQQQIIMGFLSIKGLRRDFIRNLIEERQSNGEFK 830

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
            S++    R+  K +   ++E L+F+G LD FGY+R +L   L  + K   +  +N     
Sbjct: 831  SVDSLLRRMRDKGITEEIIEKLIFSGTLDSFGYNRAELGDFLPELLKGIAFSGQN----- 885

Query: 924  ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
             ++F           T++     +   + + E+ +LG Y S HP++ Y  ++ + G K  
Sbjct: 886  VDLFEKLM------PTIKHRPDMDLDEKLDWEEELLGTYISAHPVERYANLIEQNGFKKI 939

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +E         +     + S +  +T+KG  + +   ++P  E EA  FP
Sbjct: 940  DEFS---DEAQVTTIVYIRSIRTIRTKKGESMAFANITDPTGESEAVIFP 986


>gi|297205881|ref|ZP_06923276.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus jensenii
            JV-V16]
 gi|297149007|gb|EFH29305.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus jensenii
            JV-V16]
          Length = 1040

 Score =  532 bits (1371), Expect = e-148,   Method: Composition-based stats.
 Identities = 315/1026 (30%), Positives = 522/1026 (50%), Gaps = 44/1026 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS+SLL+  + +++++         ++A+TD N  +  ++F   A    ++P++G 
Sbjct: 7    LQTLSSFSLLKSPILIDDLVKDAVDKGYSSLALTDINVTYGLVDFYLAAKKVNLKPLLGM 66

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
             + ++          G         ++ +    +GY+ ++ L S + L  D G +   + 
Sbjct: 67   TIRLN----------GIVDQAHRYDLISIAKNNQGYKNILRLSSAINLKTDNGDERKVLT 116

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
            L  L +  ++ + ++    +  + R    N+ ++    +   +K+      LY+    + 
Sbjct: 117  LKQLAKYLSDQVFIVPANITSEL-RYLAENNEKLGSDFIRELQKIIPSSSDLYLGA--YA 173

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD---RPR 247
            G ++        +A    LPL AT +  +L   D+     L A+     +         +
Sbjct: 174  GKNQPYIDYAKSMAKQFNLPLAATEDVQYLQASDHFLVKTLRAIEQGQKLVDTSSLALQK 233

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +                 +  AL N  +IA  C   +    P LP++ +    D +   
Sbjct: 234  GSHYLRTSGELVSAYNECSILSALHNAAKIADECKASVTFTQPELPKYKQSFAPDSKI-- 291

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     GL  R     I      + Y++RLD+EL +I +M F  YFLIV D I +A
Sbjct: 292  --YLRQLVQKGLAKRFNGQPI-----PEIYQKRLDYELKIIDQMGFDDYFLIVWDVINYA 344

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
               +I  GPGRGS AGS+ AY+L IT++DP++++LLFERFLNP R  MPD D+D   +RR
Sbjct: 345  HSVDITTGPGRGSAAGSLVAYSLAITEVDPIKYNLLFERFLNPARAQMPDIDLDIPDNRR 404

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+I+Y+  KYG +  AQI+TFG+L AK ALRD  R   +   Q  +    IP   +   
Sbjct: 405  DEIIKYMFEKYGMDHAAQILTFGTLAAKQALRDCARVFGLTTIQASKFTHAIPFSKSKIT 464

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              QA  +    +    A      L + + +LEG+ RHAS HAAG+VI D+ ++Q+  +  
Sbjct: 465  LAQAYQESKALQLLVNASELNKLLFKTAMRLEGIPRHASIHAAGLVISDKSIAQIAGLQ- 523

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
                 +PVTQ     +E+ GL+K DFLGL+ LT+L  +++ LA+ G+K+D   IP DD +
Sbjct: 524  AGTLGIPVTQQTKAHVEELGLLKIDFLGLRNLTILGDTIELLAKDGIKLDPKRIPLDDIK 583

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T  +FQ ES G++  L  + PD  ED++A+ +LYRPGPI NI  + NRK G
Sbjct: 584  TLQLFQKGKTDAVFQFESQGIKNVLRRLHPDSFEDVVAVNALYRPGPIQNIDHFINRKQG 643

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KE I      +  +L+ T G+++YQEQVMQ AQ+++G+SL EAD+LRRAM KK ++ +D+
Sbjct: 644  KEPITYPDSSLAKLLQPTYGILVYQEQVMQTAQIMAGFSLGEADLLRRAMSKKKQDLIDQ 703

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++E+FI+GA KNG  +  A  ++  + +FA+YGFN+SHA AY+ I++  A++K HYP  F
Sbjct: 704  EREKFIAGAVKNGHPQATASKVYAYIEQFANYGFNRSHAVAYSKIAFWLAYLKVHYPAAF 763

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A +     N  K  ++   A++  ++I+ P +N    D+ + + +I   L AIKG+  
Sbjct: 764  FTALLNSVSANRVKAGEYITQAQEAGVKILAPDINNSQTDYYLVNGQIQVGLKAIKGLRV 823

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               R+I     +  F SL DF  ++D+K L+ + + +++ AG  D    +R  LL +   
Sbjct: 824  DFLRNIAGLPKN--FTSLADFLRKIDAKFLSEQAIAAMIKAGCFDKIDENRKMLLANCKE 881

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            I +  ++  +N T     +     G     I LE+    NS+ +   E+ VLGF  +  P
Sbjct: 882  IVENIKFTGQNET-----LSEGLGG-----IRLEQAPAPNSNEKATMEEEVLGFSTTKTP 931

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            + V +    +   +          G  +     ++  +  +T+KG  + + TF + + E 
Sbjct: 932  ILVVQKYAERFNAQALNSFTVNETGIAV---GKLIKLKLIRTKKGDTMAFSTFRDASSEQ 988

Query: 1028 EANFFP 1033
            E   FP
Sbjct: 989  EITIFP 994


>gi|330001663|ref|ZP_08304089.1| putative DNA polymerase III subunit alpha [Klebsiella sp. MS 92-3]
 gi|328537605|gb|EGF63825.1| putative DNA polymerase III subunit alpha [Klebsiella sp. MS 92-3]
          Length = 788

 Score =  532 bits (1371), Expect = e-148,   Method: Composition-based stats.
 Identities = 348/801 (43%), Positives = 495/801 (61%), Gaps = 35/801 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      
Sbjct: 1   MAE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGTGHG 59

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGI+PI+G    +          Q          + +L +   GYQ L  L+SR Y    
Sbjct: 60  AGIKPIVGADFHV----------QCDLLGDEFTELTVLAANNTGYQNLTLLISRAYQRGY 109

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
           G     I   WL E   EGLI+L+GG  G +  +    +  + E+ +  +++ F DR ++
Sbjct: 110 GALGPWIDRDWLVE-HQEGLILLSGGRKGDVGVSLIRGNMPLVEQCVAFYEEHFPDRYFL 168

Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            L R    D        V LA    LP+VATN+  FL   D++AH++ +A+     +   
Sbjct: 169 ELIRTGRQDEEAYLHAAVALAEARGLPVVATNDVRFLDTSDFDAHEIRVAIHDGFTLDDP 228

Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            RPR  +P  Y+++  EM  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                E+ L  K+  GLE RL         +     +Y QRLD EL VI +M F GYFLI
Sbjct: 284 GDMTTEDFLVMKSKEGLEERLEFLFPDPAVRAEKRPEYDQRLDIELQVINQMGFPGYFLI 343

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
           P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKI 522

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
           +   P+Y D +   PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K    
Sbjct: 523 TDFAPLYCDEQGLHPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRREKNGEG 582

Query: 597 --DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP
Sbjct: 583 PLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGP 642

Query: 655 IDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
           + + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L
Sbjct: 643 LQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTL 702

Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+A
Sbjct: 703 GGADMLRRAMGKKKPEEMAKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSA 762

Query: 768 AYAVISYQTAWMKTHYPVEFL 788
           AYA++SYQT W+K HYP EF+
Sbjct: 763 AYALVSYQTLWLKAHYPAEFM 783


>gi|291300434|ref|YP_003511712.1| DNA polymerase III subunit alpha [Stackebrandtia nassauensis DSM
            44728]
 gi|290569654|gb|ADD42619.1| DNA polymerase III, alpha subunit [Stackebrandtia nassauensis DSM
            44728]
          Length = 1105

 Score =  532 bits (1371), Expect = e-148,   Method: Composition-based stats.
 Identities = 283/1047 (27%), Positives = 455/1047 (43%), Gaps = 83/1047 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L  HS +S L+GA S  +++ +        +AITD + L+ A+ FSQ A    +  +
Sbjct: 63   YAELHAHSYFSFLDGASSPEDLVTEALRLGLSGLAITDHDGLYGAVRFSQAAKDTSLSTV 122

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L + +        +   P P+   ++ L     GY +L   +    L    K    
Sbjct: 123  YGAELSLGLSGE-----RTGVPDPSGTHLLTLARGPNGYAKLSATIGNAQLAGGQKGLPD 177

Query: 131  I-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
               L  +     + +++LTG   GP+ RA          + L   K LFG + + V L  
Sbjct: 178  YGSLEDVAAALRDEVLVLTGCRKGPVRRALADG-PDAVRRELERLKHLFGPEGVAVELTD 236

Query: 189  HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            HR + D      +  LA   +LP+VATNN  +     +    V+ A+  +  + + D   
Sbjct: 237  HRAFVDTDHNQLLFDLATDLDLPVVATNNVHYARAARHRLSQVMSAIRANLPLEELDGWL 296

Query: 248  VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                   L + SEM   F+  P A+ NTV +    +F L + AP LP F   +  D    
Sbjct: 297  PAAPVARLCSPSEMAERFAPFPGAVANTVRLTGELAFDLDLIAPALPPFPVPDGHD---- 352

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E + LR  A  G                + YR RL+ EL++I  + F GYFLIV D + +
Sbjct: 353  EASWLRELAREGALRLYG----TAAERPEAYR-RLEHELDIITNLGFPGYFLIVRDIVGF 407

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             ++N I V  GRGS   SV  Y L IT +DP+R++LLFERF++P R   PD D+D    R
Sbjct: 408  CEENRILV-QGRGSAVTSVVCYCLGITAVDPVRYNLLFERFMSPIREGPPDIDLDIEARR 466

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+YV  KYG    AQ+    S + ++A RDV  AL     Q+D      P      
Sbjct: 467  REEVIQYVFTKYGRTYAAQVANVISYRRRSATRDVATALGHSPGQIDAWSANSPRRGG-- 524

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                              D     +   + +L G  RH   H+ G+VI DRP+ ++VP+ 
Sbjct: 525  ---------------PALDELPTDVGTYAGQLLGAPRHLGIHSGGMVICDRPVIEVVPVE 569

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDD 605
                 +  V Q++      AGL+KFD LGL  LT L ++ D         +DL  +   D
Sbjct: 570  HARMENRTVLQWDKDDCADAGLVKFDLLGLGMLTALHEAADLANTHYATGIDLKKLAPTD 629

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNN 663
             + Y ++    ++G FQ+ES    Q    ++ + + D+   ++L RPGPI    +  Y  
Sbjct: 630  PDVYAMIHAGDSVGTFQIESRAQIQLAPRLRAENLHDLAVQIALVRPGPIQGGAVHPYVR 689

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            R+ G+E I   HP ++  LK T GV ++QEQ+M +A   +G+S +EAD LR+AM  K+  
Sbjct: 690  RRRGEEPIEYPHPTMEAALKRTLGVPLFQEQMMALASDCAGFSAAEADELRQAMGAKRSV 749

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E M + K RF++GA+ N I+  +A +++  L  F+ YGF +SHA ++A I+Y +A++K +
Sbjct: 750  ERMQRLKSRFLTGAAANDITGPLADDLWSRLEAFSGYGFPESHAISFAYIAYASAYLKRY 809

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-------- 834
            YP  FL   +  +      +     DAR+  + +    +N       +            
Sbjct: 810  YPAAFLVGLIRAQPMGFYSVNTLIADARRHGVTVHAVHINHSSATTTLDQKGAPALPETT 869

Query: 835  ----------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
                      +   L  I+G+ T TA  I+     +P+  +     R +   +    LE+
Sbjct: 870  PATWGAQGPTVRLGLDQIRGINTETAERIVR---GQPYTDISQLARRAE---ITTTQLEN 923

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L  +GAL  FG +R Q L +               T           G  + ++T     
Sbjct: 924  LATSGALADFGLTRRQALWTAAPAAANTPDTLDGTTTLTP---PTLPGMSAAELTAANLH 980

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              NS               + HP+   +  L   G             + + +  +V  +
Sbjct: 981  TTNS-------------SPTTHPITHIRHQLAAHGAIPIHLLSTMPDKSRVTIGGLVTHR 1027

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            Q  +T  G  + ++   +         
Sbjct: 1028 QAPETAHG--VLFLNLEDETGHANIVC 1052


>gi|296283965|ref|ZP_06861963.1| DNA polymerase III alpha chain [Citromicrobium bathyomarinum JL354]
          Length = 1190

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 237/1095 (21%), Positives = 431/1095 (39%), Gaps = 113/1095 (10%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             ++P FV L + S +S L G+    +++         A+ I D N +   +    +A   
Sbjct: 24   PRAP-FVELGLVSCFSFLRGSSDAVDLVTTARMLGYDALGIADANTMAGVVRIHTEAKTL 82

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-- 123
             ++P+IGC++                      + +        Y  L  L+S+  +    
Sbjct: 83   KLRPVIGCRI----------------ETVEGLAFLAYPKDRAAYGCLCRLISQGRMQTLS 126

Query: 124  ---QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF-------------------- 160
               Q K    I L+ L +   +  ++L       +                         
Sbjct: 127  GKWQEKGVCEIDLAMLADHAEDVQLILLPPDDLDVRFTIAVPSNVIPFRHPSSELQKGSV 186

Query: 161  -----FNSSQVAE-----KRLLTFKKLFGD-RLYVNLQRHRGYDRYRESQVVQLAYTHEL 209
                   + +V       + L          R       +RG D  R  ++  +A  H L
Sbjct: 187  SPDQVRGNDKVELTAPFPRLLAHLTAQLPTLRHLAAAYLYRGDDIARIDRLDAMAREHGL 246

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLP 268
             L+ATN+  + + E    +DV+ A+ H T V           + +LK   EM+ +F+  P
Sbjct: 247  SLLATNDVHYHAAERRPLNDVMTAIRHKTTVEAAGHLLHANAERHLKLPEEMIRLFARWP 306

Query: 269  EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
             A+  + +IA  C+F L+      P+    +        +  L  +   G   R +    
Sbjct: 307  HAIMASRDIADACTFSLEDLKYEYPKRAYPDGM----TPQQYLEQQTWEGANWRYSN--- 359

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV-GPGRGSGAGSVTA 387
                     +  L++EL +I ++  + YFL + + + +A+    P+   GRGS A S   
Sbjct: 360  ---VIPAKVKTTLEYELELIGKLDLAPYFLTIKEIVDFARSQTPPILCQGRGSAANSAVC 416

Query: 388  YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
            + L IT +DP    LLF+RFL+ +R   PD D+DF  +RR+EVI+++  +YG +R     
Sbjct: 417  FCLGITSVDPAEHQLLFDRFLSEERSEPPDIDVDFEHERREEVIQHIYKEYGRDRAGLCA 476

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T    + + A+R+VG+A+ +       L + +       +    +A+        + DP 
Sbjct: 477  TVIHYRPRMAIREVGKAMGLSEDVTASLARTVWGGWGREIGEDHVAET----GMDITDPH 532

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
            + R+L ++ ++ G+ RH S H  G ++ D  L++ VP+      D    +++   I+  G
Sbjct: 533  LRRVLTLTSQMIGMPRHLSQHVGGFILTDGLLTETVPIGNGAMPDRSFIEWDKDDIDDLG 592

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            + K D L L  LT ++K LD L     +   L+ IP +D   Y +L    +LG+FQ+ES 
Sbjct: 593  IFKVDVLALGMLTCIRKGLDLLEDHYERPLTLATIPQEDPAVYDMLCKGDSLGVFQVESR 652

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG--------------KEKIV 672
                 L  +QP    D++  V++ RPGPI   +V+   K                     
Sbjct: 653  AQMNMLPRLQPRQFYDLVVQVAIVRPGPIQGDMVHPYLKQRRLARAGKTDFQLPAPAPEH 712

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEEMDKQKER 731
                 +  +L  T GV I+QEQ M+IA   + +S +EA+ LRRAM     +  +   +E 
Sbjct: 713  GPPDELSSILGRTFGVPIFQEQAMKIAIDAAKFSPAEANRLRRAMATFRSRGMVHAHEEM 772

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
             +    + G     +   F+ +  F +YGF +SHAA++A + Y ++W+K HYP  F  A 
Sbjct: 773  MVGRMIERGYDPDFSQRCFDQIKGFGEYGFPESHAASFAHLVYVSSWLKCHYPAAFACAL 832

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----------NRIYYSLA 840
            +  +        +  +DA +  + ++P  VN    D  + D             +   L 
Sbjct: 833  LNSQPMGFYAPAQIVRDAAEHGVAVLPADVNGSDWDCTLEDIPPRAGEDKRHMALRLGLR 892

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             I G     A  ++     + P+  + +   R     L    +E L  A A       R 
Sbjct: 893  QIDGFPEHVAAKLVAERIENGPYRDVAELRDRA---GLAPSYVERLASADAFQSLDLPRR 949

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE-KFSVENSSVRFENEQRV 958
            Q L    ++                 +F            +     V   S     + + 
Sbjct: 950  QALWDARSLI----------AAPDLPLFRAAAEREEGAEKVRTALPVMPLSEEVVADYQT 999

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
                   HP+   +  L + G     +       + +++A +V+ +Q+  + KG  + ++
Sbjct: 1000 TRLSLKAHPMAFLRADLAERGFVRACDLRERKFRSMVQVAGVVLIRQRPGSAKG--VCFI 1057

Query: 1019 TFSEPAKEYEANFFP 1033
            T  +         +P
Sbjct: 1058 TLEDETGVVNLVVWP 1072


>gi|268317469|ref|YP_003291188.1| DNA polymerase III, alpha subunit [Rhodothermus marinus DSM 4252]
 gi|262335003|gb|ACY48800.1| DNA polymerase III, alpha subunit [Rhodothermus marinus DSM 4252]
          Length = 1607

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 273/745 (36%), Positives = 399/745 (53%), Gaps = 25/745 (3%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            F HL  H+ YSLL+GA  +  +L++ A  +  A+AITD  NLF   EF + A   GIQP
Sbjct: 3   RFSHLHCHTQYSLLDGAARIQTLLERAAEYEIEAVAITDHGNLFGVPEFYRTAEKIGIQP 62

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIGC+  +          + +         VLL     GY+ LI+L S  YL +      
Sbjct: 63  IIGCEFYLTPTSRHDRNERTR------YHQVLLAKNETGYRNLIKLSSLSYL-EGYYYKP 115

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           RI    L +   EGLI  T    G I +       + A K    + +LFG+  Y+ +Q H
Sbjct: 116 RIDHELLTQYH-EGLIATTCCLQGEIPQTILHKGEEAARKLFEWYLELFGEDYYIEIQDH 174

Query: 190 RGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              ++    + +++ A  + + ++ATN+  ++   D+E HDVL+ +     +S   R R 
Sbjct: 175 GLPEQKKINAILLRWAREYGVRVIATNDVHYVDRTDFEPHDVLLCLQTGKDMSDPSRLRF 234

Query: 249 TPDHYL--KNRSEMVSIFSDLPEAL---ENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             D +          ++ SD+   L                 Q+    L         + 
Sbjct: 235 DNDQFYLKSPAEMRQALLSDIEPRLVDEMMANTGEVADKCRFQLPTGKLLMPHYPIPPEY 294

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             + +  LR+    G   R             +  +RL+ EL +I +M F+GYFLIV DF
Sbjct: 295 NGDMDAYLRDLVFEGARRRYGDPL------PHEVAERLEHELAIIKKMGFAGYFLIVQDF 348

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
              A++  + VGPGRGS AGS  AY L IT+IDPL++ LLFERFLNP+R+SMPD DIDF 
Sbjct: 349 TTAARRLGVRVGPGRGSAAGSAVAYCLGITNIDPLKYDLLFERFLNPERVSMPDIDIDFD 408

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              R +VI YV  KYG E V QIITFG++ AK A+RDV R L +P ++ DR+ KLIP+ P
Sbjct: 409 DRGRGKVIDYVVQKYGRENVCQIITFGTMGAKMAIRDVARVLGIPLAEADRIAKLIPDGP 468

Query: 484 AHPVSLQAIADDSRFREARL-ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
              +  QA  +    R  +   DP + +LL  ++ LEG  RH   HAAG++I    +S  
Sbjct: 469 KVTL-AQAYEEVPELRALKESNDPQIRKLLHYAEVLEGSVRHTGVHAAGVIIAPGRVSDY 527

Query: 543 VP--MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
           VP  + +   +D   TQ++ KWIE+ GL+K DFLGLKTLT+L  +L  + +   +++DL 
Sbjct: 528 VPVAVAKGKDNDTVTTQYDGKWIEEFGLLKMDFLGLKTLTILNDALQLIKENHGIEIDLD 587

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            IP DD +T+ L     T+ IFQ ES GMR+ L  ++P  I+D+IA+ +LYRPGP+D I 
Sbjct: 588 QIPLDDPKTFELFQRGETVAIFQFESEGMREWLRKLKPTSIDDLIAMNALYRPGPMDLIP 647

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            Y  RK+G E +   HPL++P+LK T G+ IYQEQVMQ+AQ+++GY+L +AD+LRR + +
Sbjct: 648 NYIARKHGLEPVEYPHPLLEPVLKNTYGIPIYQEQVMQMAQVMAGYTLGQADLLRRCVAE 707

Query: 720 KIKEEMDKQKERFISGASKNGISKT 744
                  +   R      + G+   
Sbjct: 708 GTLIVDARTGRRVPVEEVQPGMEVW 732



 Score =  294 bits (752), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 109/348 (31%), Positives = 181/348 (52%), Gaps = 28/348 (8%)

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +  +MGKK  EEM K +E F++GA++ G+    A  +F+++ KFA YGFNKSH+AAY+++
Sbjct: 1124 VHNSMGKKKVEEMKKHREIFVAGAAERGVDAETANAVFDMMEKFAGYGFNKSHSAAYSIV 1183

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +YQTA++K +YP EF+AA+MT EM + +K+     +AR+  ++++PPS+N     F V D
Sbjct: 1184 AYQTAYLKANYPAEFMAAAMTSEMGDTKKLAVVLDEARRMGLELLPPSINRSQAHFTVED 1243

Query: 833  NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
             RI + L AIKGVG      I++A     PF ++ D    +D + +N++VLESL  AGAL
Sbjct: 1244 GRIRFGLGAIKGVGLGAIEAILKAREKHGPFRTIFDLIRHLDLRVVNKKVLESLARAGAL 1303

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-TFSDKITLEKFSVENSSV 950
            D     R QL++++D   +YAQ V+ +R     ++F      T      L      + + 
Sbjct: 1304 DELEGHRAQLVEAIDLAVQYAQKVQADRMAGQASLFGESGTRTALPPPNLPVVQPWSRAR 1363

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT-------IRGN---------- 993
              + E+ ++GFY +GHPL+ Y+  +         E   T         G+          
Sbjct: 1364 CLKEERELIGFYVTGHPLEAYRAEVNAFATTTLAELSRTLEEADMPRNGSTNGHTNGTTN 1423

Query: 994  ---------NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                       R+  ++   Q++  R G  + + +  +   + E   F
Sbjct: 1424 GHAYRPARPRHRICGIITEVQRRIGRNGRPLAFASIEDFTGQGELVIF 1471


>gi|319793113|ref|YP_004154753.1| DNA polymerase iii, alpha subunit [Variovorax paradoxus EPS]
 gi|315595576|gb|ADU36642.1| DNA polymerase III, alpha subunit [Variovorax paradoxus EPS]
          Length = 1118

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 251/1085 (23%), Positives = 420/1085 (38%), Gaps = 121/1085 (11%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   +++S   GA +   ++++       A+AITD  ++   +            
Sbjct: 33   PDYAELHCLTNFSFQRGASTPEEVVERAYQLGYAALAITDECSVAGIVRAYVCRRD---- 88

Query: 69   PIIGCQLDIDMQDNLKMTNQ------------GKTPFPTVPSIVLLVSTAEGYQRLIELV 116
                 +  +D  +                   G         +V++ +  EG+  L E +
Sbjct: 89   ----MEHTLDEYEREHPEEPPIPRNLTFRLLFGSEFRFERFRLVVIANDTEGWGNLCEFI 144

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA--EKRLLTF 174
            +     +  K   R+      ++ +     L       +       +  VA   + LL  
Sbjct: 145  TAARNTELPKGEYRVSWED-SDVAS-----LQNCQVLFVPHRESGGAVDVATLHEDLLAA 198

Query: 175  KKLFGDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            K L+   L++ +   +   D      ++Q +    +PLVA  +    +      HDVL A
Sbjct: 199  KALYAGNLWLAVEMLNELDDDLWFVTLMQASEQTGVPLVAAGDVHMHARSRKPLHDVLTA 258

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            V     V++      +     +         ++L         +                
Sbjct: 259  VREGKTVAECGFALQS---NAERHLRQRVRLAELYLPEMLANTLVVAERCRFDPKVIRDN 315

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
                 E     +     L  K  AG + R   G           R +L  EL++I  +++
Sbjct: 316  YKYPLEMLGSNETATQTLARKTWAGAQERYPGG------IPDAVRAQLHKELDLIRELEY 369

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
              +FL V D +++AK   I    GRGS A SV  Y L IT I P +  LLFERFL+  R 
Sbjct: 370  EMFFLTVEDIVRFAKSQKIL-CQGRGSSANSVVCYCLGITAISPEKSHLLFERFLSRHRH 428

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
              PD D+DF   RR+EVI+Y+  KYG ER A        ++++ALRDVG+A+ +    VD
Sbjct: 429  EPPDIDVDFEHQRREEVIQYIYEKYGRERAAIAAVVICYRSRSALRDVGKAIGIDERLVD 488

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
               K         +  Q  A  +R          V  + E++Q+L+G  RH S H  G V
Sbjct: 489  EFAKDHYWFDDAVLGEQLNAACARVGVKEDEFKLVQWI-ELTQRLKGFPRHLSQHVGGFV 547

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQR 592
            +    L++LVP+ +    D  V Q+    +E  G++K D L L  L+ +++ L      R
Sbjct: 548  LTHTKLTRLVPVEKASMKDRSVIQWEKDDLEAMGMLKVDVLALGMLSAIRRGLDHMNRWR 607

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            G  V +  +P DD + + ++    T+G+FQ+ES      L  ++P C ED++  V++ RP
Sbjct: 608  GSMVQMHDVPHDDQKVFDMICDADTVGVFQIESRAQMSMLPRLKPRCYEDLVIEVAIVRP 667

Query: 653  GPIDNIVVYNNRKNGKE-----KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            GPI   +V+   K  +       I      +   L+ T G+ I+QEQVMQIA + + +S 
Sbjct: 668  GPIQGGMVHPYLKQRERVAKGLPIHYEKDELREALERTLGIPIFQEQVMQIAMIAARFSA 727

Query: 708  SEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             EAD LRRAM     K  +DK   + ++G   N   +  A  IF+ +  F DYGF +SHA
Sbjct: 728  DEADQLRRAMAAWKRKGGLDKFHAKLVNGMVDNEYPREFAEAIFKQILGFGDYGFPESHA 787

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A++A++   ++W+K + P  FLAA +  +        +  QDAR+  +++ P  V     
Sbjct: 788  ASFALLVTVSSWLKNYEPACFLAALLDSQPMGFYSPSQLVQDARRHGVEVRPVDVTHSDF 847

Query: 827  DFKVG-------------------------DNRIYYSLAAIKGVGTTTARHIMEASADKP 861
            D  +                             +   L  I G+       +++A A  P
Sbjct: 848  DTTLEARAPDAPRMPPSTDARYAERLGNENQPAVRLGLNRISGLSKEGVERLLKARAQSP 907

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALD--------------CFGYSRMQLLQSLDN 907
            F S ED   R +                 LD                   R Q +     
Sbjct: 908  FTSTEDLALRAE-----------------LDGKDMAALAAADALMSLSGHRRQQVWDATA 950

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
             ++    ++    N+   +                            +   LG     HP
Sbjct: 951  QRRSPALLKGVPINEQVLL----------------LPAAPEGEEIVGDYASLGLTLRRHP 994

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L + +P L +M +   EE  A   G  +R   +V  +Q+  T  G+   +VT  +     
Sbjct: 995  LALLRPRLSRMKLMSAEELRAQPTGRTVRACGIVKGRQRPGTANGT--IFVTLEDETGNV 1052

Query: 1028 EANFF 1032
                +
Sbjct: 1053 NVIVW 1057


>gi|285817385|gb|ADC37872.1| DNA polymerase III alpha subunit [Staphylococcus aureus 04-02981]
          Length = 1065

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 309/1022 (30%), Positives = 503/1022 (49%), Gaps = 81/1022 (7%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G 
Sbjct: 5    LNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFGM 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + +    N   T             V+L    +G + L +L S + +         +  
Sbjct: 65   TIYVTNGLNTVET-------------VVLAKNNDGLKDLYQLSSEIKMNSMEN----VSF 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              LQ+  +  +I+                     +      + +        +Q    ++
Sbjct: 108  ELLQQFSSNLIIIF--------------------KNVADEHRDI--------VQVFDSHE 139

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                     L     +  V   N  + + +D +    L A+  +  +             
Sbjct: 140  DTYLDHQSVLVQ--GIKHVWIQNVCYQTRQDADTISALAAIRDNAKLD-----------L 186

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            + ++ +  + F    E  +  +         +            +      +   +E   
Sbjct: 187  IHDQEDFGAHFLTEKEIKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQYQTPNDESAK 246

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            K +      L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ 
Sbjct: 247  KYLW---RVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVM 303

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ VI+Y
Sbjct: 304  VGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQY 363

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            VQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +      
Sbjct: 364  VQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQI 423

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            DD  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +      
Sbjct: 424  DD--FKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG-- 479

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612
             +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + LL
Sbjct: 480  LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILIQVKKDLGINIDIEKIPFDDQKVFELL 539

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+ 
Sbjct: 540  SQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQ 599

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ F
Sbjct: 600  YLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHF 659

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  +
Sbjct: 660  IEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANIL 719

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + + 
Sbjct: 720  SNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKV 779

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +   
Sbjct: 780  IVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDG 839

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
               +E++       +F       + K   E       ++  + E+  LGFY S HP+D  
Sbjct: 840  DLNIEQD-----GFLFD----ILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD-- 888

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                         +         I +       +Q +T+ G  + +VT ++  +  +   
Sbjct: 889  -KKFVAKQYLTIFKLSNAQNYKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLDGVI 945

Query: 1032 FP 1033
            FP
Sbjct: 946  FP 947


>gi|15924693|ref|NP_372227.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            Mu50]
 gi|15927280|ref|NP_374813.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            N315]
 gi|148268182|ref|YP_001247125.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus JH9]
 gi|150394249|ref|YP_001316924.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus JH1]
 gi|156980020|ref|YP_001442279.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            Mu3]
 gi|255006487|ref|ZP_05145088.2| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            Mu50-omega]
 gi|257794087|ref|ZP_05643066.1| DNA polymerase subunit III [Staphylococcus aureus A9781]
 gi|258415791|ref|ZP_05682062.1| DNA polymerase subunit III [Staphylococcus aureus A9763]
 gi|258421972|ref|ZP_05684892.1| DNA polymerase subunit III [Staphylococcus aureus A9719]
 gi|258438270|ref|ZP_05689554.1| DNA polymerase subunit III [Staphylococcus aureus A9299]
 gi|258443728|ref|ZP_05692067.1| DNA polymerase subunit III [Staphylococcus aureus A8115]
 gi|258445939|ref|ZP_05694115.1| DNA polymerase subunit III [Staphylococcus aureus A6300]
 gi|258448381|ref|ZP_05696498.1| DNA polymerase subunit III [Staphylococcus aureus A6224]
 gi|258454139|ref|ZP_05702110.1| DNA polymerase subunit III [Staphylococcus aureus A5937]
 gi|282893197|ref|ZP_06301431.1| DNA polymerase III subunit alpha [Staphylococcus aureus A8117]
 gi|282927832|ref|ZP_06335443.1| DNA polymerase subunit III, alpha [Staphylococcus aureus A10102]
 gi|295406012|ref|ZP_06815820.1| DNA polymerase III subunit alpha [Staphylococcus aureus A8819]
 gi|296274871|ref|ZP_06857378.1| DNA polymerase III DnaE [Staphylococcus aureus subsp. aureus MR1]
 gi|297245062|ref|ZP_06928939.1| DNA polymerase III subunit alpha [Staphylococcus aureus A8796]
 gi|54036991|sp|P63980|DPO3A_STAAN RecName: Full=DNA polymerase III subunit alpha
 gi|54040952|sp|P63979|DPO3A_STAAM RecName: Full=DNA polymerase III subunit alpha
 gi|13701498|dbj|BAB42792.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            N315]
 gi|14247475|dbj|BAB57865.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            Mu50]
 gi|147741251|gb|ABQ49549.1| DNA polymerase III catalytic subunit, DnaE type [Staphylococcus
            aureus subsp. aureus JH9]
 gi|149946701|gb|ABR52637.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus JH1]
 gi|156722155|dbj|BAF78572.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            Mu3]
 gi|257788059|gb|EEV26399.1| DNA polymerase subunit III [Staphylococcus aureus A9781]
 gi|257839384|gb|EEV63857.1| DNA polymerase subunit III [Staphylococcus aureus A9763]
 gi|257842016|gb|EEV66445.1| DNA polymerase subunit III [Staphylococcus aureus A9719]
 gi|257848314|gb|EEV72305.1| DNA polymerase subunit III [Staphylococcus aureus A9299]
 gi|257851134|gb|EEV75077.1| DNA polymerase subunit III [Staphylococcus aureus A8115]
 gi|257855181|gb|EEV78120.1| DNA polymerase subunit III [Staphylococcus aureus A6300]
 gi|257858349|gb|EEV81234.1| DNA polymerase subunit III [Staphylococcus aureus A6224]
 gi|257863591|gb|EEV86348.1| DNA polymerase subunit III [Staphylococcus aureus A5937]
 gi|282590342|gb|EFB95421.1| DNA polymerase subunit III, alpha [Staphylococcus aureus A10102]
 gi|282764515|gb|EFC04641.1| DNA polymerase III subunit alpha [Staphylococcus aureus A8117]
 gi|294969009|gb|EFG45030.1| DNA polymerase III subunit alpha [Staphylococcus aureus A8819]
 gi|297178142|gb|EFH37390.1| DNA polymerase III subunit alpha [Staphylococcus aureus A8796]
 gi|312830081|emb|CBX34923.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            ECT-R 2]
 gi|315130663|gb|EFT86649.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            CGS03]
 gi|329727251|gb|EGG63707.1| putative DNA polymerase III subunit alpha [Staphylococcus aureus
            subsp. aureus 21172]
          Length = 1065

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 309/1022 (30%), Positives = 503/1022 (49%), Gaps = 81/1022 (7%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G 
Sbjct: 5    LNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFGM 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + +    N   T             V+L    +G + L +L S + +         +  
Sbjct: 65   TIYVTNGLNTVET-------------VVLAKNNDGLKDLYQLSSEIKMNSMEN----VSF 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              LQ+  +  +I+                     +      + +        +Q    ++
Sbjct: 108  ELLQQFSSNLIIIF--------------------KNVADEHRDI--------VQVFDSHE 139

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                     L     +  V   N  + + +D +    L A+  +  +             
Sbjct: 140  DTYLDHQSVLVQ--GIKHVWIQNVCYQTRQDADTISALAAIRDNAKLD-----------L 186

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            + ++ +  + F    E  +  +         +            +      +   +E   
Sbjct: 187  IHDQEDFGAHFLTEKEIKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQYQTPNDESAK 246

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            K +      L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ 
Sbjct: 247  KYLW---RVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVM 303

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ VI+Y
Sbjct: 304  VGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQY 363

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            VQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +      
Sbjct: 364  VQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQI 423

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            DD  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +      
Sbjct: 424  DD--FKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG-- 479

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612
             +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + LL
Sbjct: 480  LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILIQVKKDLGINIDIEKIPFDDQKVFELL 539

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+ 
Sbjct: 540  SQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQ 599

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ F
Sbjct: 600  YLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHF 659

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  +
Sbjct: 660  IEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANIL 719

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + + 
Sbjct: 720  SNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKV 779

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +   
Sbjct: 780  IVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDG 839

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
               +E++       +F       + K   E       ++  + E+  LGFY S HP+D  
Sbjct: 840  DLNIEQD-----GFLFD----ILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD-- 888

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                         +         I +       +Q +T+ G  + +VT ++  +  +   
Sbjct: 889  -KKFVAKQYLTIFKLSNAQNYKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLDGVI 945

Query: 1032 FP 1033
            FP
Sbjct: 946  FP 947


>gi|83952727|ref|ZP_00961457.1| DNA polymerase III, alpha subunit, putative [Roseovarius nubinhibens
            ISM]
 gi|83835862|gb|EAP75161.1| DNA polymerase III, alpha subunit, putative [Roseovarius nubinhibens
            ISM]
          Length = 1107

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 273/1057 (25%), Positives = 448/1057 (42%), Gaps = 84/1057 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-----CAA 65
            +  L V ++++ L GA     ++ + A     AIAITD N+L   +   +        A 
Sbjct: 4    YAELGVTTNFTFLTGASHPEEMVARAAELGLEAIAITDRNSLAGVVRAYKALKLLRDKAQ 63

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP---------SIVL----------LVSTA 106
             + PI      ID     ++  Q   P P  P          +VL          L +  
Sbjct: 64   EVLPI-RSHRRIDSSSRQEVGWQRPLPRPETPQLPRLITGARLVLRDGRGVDWLALPTDL 122

Query: 107  EGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
              YQRL  L++      + K    + L+ L          L G  +G I  A   +  + 
Sbjct: 123  AAYQRLTRLLTLGKRRAE-KGQCHLDLADL----------LAGC-AGMILIALPEDLRRA 170

Query: 167  AEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
            A + +   ++ +   +++    R+ G D+        LA     P+VA  + L       
Sbjct: 171  APE-IQQMRRRYPGHVFLGAAPRYDGSDQAYFDACAALALRCAAPMVAVGDVLMHRAARR 229

Query: 226  EAHDVLMAVAHSTV-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
            +  DVL  +           R     +  LK   +M  +F + P AL  TVEIA RCSF 
Sbjct: 230  QLADVLTCLREGCTIDHIGTRALPNAERRLKGAEDMARLFRNHPAALRRTVEIAGRCSFC 289

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            L   +   P    +    + +     LR  A  GL  R  +GA AK       R  LD E
Sbjct: 290  LSELSYQYPEEGSQHEPPMAR-----LRRLAEEGLARRYPKGATAKA------RALLDKE 338

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
            L V+  +KF  YFL V D +Q+A+   I    GRGS A S+  Y L ITD+ P    ++F
Sbjct: 339  LAVVEELKFPAYFLTVHDIVQFARSRGIL-CQGRGSAANSILCYLLGITDVSPEMIGMVF 397

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            ERF++  R   PD D+DF  +RR+EVI+++   YG ER     T    + +AA+R+VG+ 
Sbjct: 398  ERFISRHRGEPPDIDVDFEHERREEVIQWIYATYGRERAGLCATVIHFRTRAAIREVGKV 457

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            + +      RL   I        S   +           AD  + + + +  ++ G  RH
Sbjct: 458  MGLSQDLTTRLSADIW---GLTNSGADMERAREL-GLDPADRRLAQTMRLIGEIIGFPRH 513

Query: 525  ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
             S H  G VI    L +L P+      D  + +++   I+  G++K D LGL  L+ ++K
Sbjct: 514  LSQHVGGFVITKGRLDELAPIENAAMEDRTLIEWDKDDIDTLGILKVDVLGLGMLSCVRK 573

Query: 585  SLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
            S D LAQ   +   L+ +P +D  TY +L     +G+FQ+ES      L  M+P    D+
Sbjct: 574  SFDLLAQHEGQNLSLATVPQEDRHTYEMLQRADAVGVFQVESRAQMNFLPRMKPREFYDL 633

Query: 644  IALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +  V++ RPGPI   +   Y  R+ G E      P ++ + + T GV ++QEQ MQIA  
Sbjct: 634  VIEVAIVRPGPIQGGMVQPYIRRRQGLEAPEPFGPALEEVTRRTLGVPLFQEQAMQIAMT 693

Query: 702  LSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
             +GY+  EAD LRR++    +   + + ++RF++G   NG ++ +A   F  +  FADYG
Sbjct: 694  GAGYTAEEADHLRRSLASFRRMGTIGEHRDRFLTGMMANGYAREVAERCFGQIEGFADYG 753

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            F +SHAAA+A++ Y +AW+K H+P  F  A +  +        +  +DAR   ++  P  
Sbjct: 754  FPESHAAAFALLVYVSAWLKCHHPAIFACALLNSQPMGFYAPAQIVRDARDHGVETRPVC 813

Query: 821  VNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            +N    D  +         +      IKG+    AR I+ A  +  +   E    R    
Sbjct: 814  LNHSEWDNTLERRGDGALALRLGFRQIKGLREEDARWIVAARGNG-YRDPESVWLRA--- 869

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
             +   VLE L  A      G +R   L ++  I          R  K   +F       +
Sbjct: 870  GVAPAVLERLAEADGFADMGLTRRDALWAVRAI----------RGQKPLPLFNDPIDGEA 919

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
                       +       +   +      HP+++ +P +   G+  ++  +        
Sbjct: 920  IHEPAVTLPPMHLGEEVVEDYVSMRLTLRAHPMELLRPSMP--GLTRHDALLTAPLERR- 976

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +  +V+++Q+  T  G  + ++T  +         +
Sbjct: 977  SICGLVITRQRPGTASG--VVFLTLEDETGVANVVVW 1011


>gi|260662144|ref|ZP_05863040.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            fermentum 28-3-CHN]
 gi|260553527|gb|EEX26419.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            fermentum 28-3-CHN]
          Length = 1099

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 328/1027 (31%), Positives = 507/1027 (49%), Gaps = 63/1027 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L V S YSLLE  +    ++         A+ + D   L+ A+ F ++A  AG+ P+
Sbjct: 3    FVPLAVKSMYSLLEAPVRPAELVAVAKERGYQAVGLVDARVLYGAVNFVRRANQAGLHPV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L +   +                 + LL   A GYQ L  L +R       +    
Sbjct: 63   IGVSLPLTFAEG-------------TLDVTLLAKGAVGYQNLTRLSTRAMTDRANQ---P 106

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + +  L+E+ ++ L+++         +      S+    +L           Y+ +  + 
Sbjct: 107  LTIEDLREV-SDDLVVIVA------PQLMLLGVSEQTYAQLGEVAD------YLGI--NL 151

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRPRVT 249
             +       +  +A    LPL+A     +L+E+DY A  VL A+     +       + T
Sbjct: 152  DFTAAERQDLQAVAERCGLPLIALEPVEYLNEDDYFATQVLRAIKAGHTIEDPLKASQRT 211

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              H+L+   E+ + +     A      +A      +          +        +   +
Sbjct: 212  GRHWLRPAEEVAAAYRAAGLAEAAAQTVAVAERCQVHFAD--QTPVLPAFPTPAGQGVAD 269

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR     GL  R   G         +Y+ RL+ EL VI +M F  YFLIV D + +A +
Sbjct: 270  YLRELCQRGLAKRKLAG------DPAEYQARLEHELTVIHQMGFDNYFLIVWDLMNFAHQ 323

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            + I  GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLNP+R  MPD D+D   +RR+E
Sbjct: 324  HQILTGPGRGSAAGSLVAYALAITDVDPLQYGLLFERFLNPERAQMPDIDLDLPDNRREE 383

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V+ Y+ + YGHERVAQIITFGSL  K  LRDV R   +P  QV+ L ++I        +L
Sbjct: 384  VLNYLHHHYGHERVAQIITFGSLGTKQVLRDVSRVFNLPKYQVESLSQVIDRVKGPHQTL 443

Query: 490  QAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
              + + ++  +        V  LLE++ KLEGL RH S HAAG+V+   PL + VP+   
Sbjct: 444  ADLLESAQPVQNLARDSKLVACLLEVAAKLEGLPRHDSIHAAGVVLAAEPLIKTVPLQAG 503

Query: 549  VRSD-LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
                 + VTQF    +E  GL+K D LGL+ LT ++ +L+ + Q     DL+ I  +D  
Sbjct: 504  NEPGAMLVTQFEKDTVESLGLLKIDLLGLRNLTTVETALNLIHQHQPDFDLTHIALNDRP 563

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T GIFQ ESSG+RQ L  + PD  E+I+A+ +LYRPGP+DNI  +  RK G
Sbjct: 564  TLALFDRGQTSGIFQFESSGIRQTLVNLHPDNFEEIVAVNALYRPGPMDNINHFIARKKG 623

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E +      + P+L  T G+++YQEQVMQ+A ++ G+SL EAD+LRRAM KK    M  
Sbjct: 624  QEAVNLPAKELAPILAPTYGILVYQEQVMQVAAVMGGFSLGEADLLRRAMSKKKLATMAS 683

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             KE F++GA+K G    +A  +F  + +FA+YGFN+SHA AY+ ++++ A++K H+P EF
Sbjct: 684  MKEAFLAGANKRGYPNAVAEQVFAYIDQFANYGFNRSHAVAYSKMAFEMAYLKVHFPAEF 743

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            LAA M  +  +  K+  +  +A+Q  I    P++N       + D  ++  L  IKG+  
Sbjct: 744  LAALMETD-PDTSKVWAYFSEAKQLGITTHGPAINQSQERVSLVDQELWLGLDMIKGLRR 802

Query: 848  TTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               R I+E      P+  L D  +R+D+K     +   L+ AGALD  GY+R ++ + L 
Sbjct: 803  DFIRAIIEERNQHGPYQDLPDLVNRLDAKWHKEALFVPLIDAGALDHLGYNRAEMAEGLK 862

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             I + A++                         + + +    +VR   E  VLG Y SGH
Sbjct: 863  AILEGAEYA---------------GLGLGMAPVVAQRNEYPLAVRLAREHAVLGTYLSGH 907

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG-SRIGWVTFSEPAK 1025
            P+  Y+ +  K+ +    +         +RL  MV   ++  T++    + ++T S+   
Sbjct: 908  PVSQYQDLRTKLKLPTVAQL---RPNQRVRLVLMVTRMRKVTTKREHKPMAFLTASDETG 964

Query: 1026 EYEANFF 1032
              E   F
Sbjct: 965  AVEVTIF 971


>gi|163787271|ref|ZP_02181718.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium ALC-1]
 gi|159877159|gb|EDP71216.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium ALC-1]
          Length = 1128

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 297/874 (33%), Positives = 450/874 (51%), Gaps = 66/874 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF----------- 58
             FVHL  HS +S+L+  +S+ +++   A +  PA+A+TD  N+  A  F           
Sbjct: 260  DFVHLHNHSQFSILQSTISIKDLVAAAAKENMPAVALTDHGNMMGAFHFVSAVGNHNKGV 319

Query: 59   ---SQKACAAG-------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                 +A   G       I+PIIGC+  +         +  KT       IVL+    +G
Sbjct: 320  KAQHAQAEENGDEKKGKLIKPIIGCEFFVC------EKHDDKTRKDNGYQIVLMAKNKKG 373

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
            Y  L +L S  +  D      RI    +++   E LI LTG   G +           AE
Sbjct: 374  YHNLAKLSSAAFT-DGFYYVPRIDKQLIEQY-KEDLICLTGNLYGEVPSKVLNVGENQAE 431

Query: 169  KRLLTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            + LL +K  F D LY+ L RH   D  R    ++Q A  H++ LVATNN+ ++ +E+  A
Sbjct: 432  EALLWWKDTFQDDLYIELMRHNQEDENRVNPVLIQFAKKHDVKLVATNNTYYVEQENANA 491

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            HD+L+ V      +          + L N+        ++     +  E       ++  
Sbjct: 492  HDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSSEEMKALFRDVPEAIVNIQDVVDK 551

Query: 288  HAPIL---------------PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
              P                  +  + E D  ++ E   L++    G E          G 
Sbjct: 552  IEPYELARDVLLPAFDIPNEFKHEDDEADGGKRGENAFLKHLTYKGAEK-------RYGD 604

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
               + ++RLDFEL+VI    + GYFLIV DFI+ A+K ++ VGPGRGS AGSV AY L I
Sbjct: 605  ITPEIKERLDFELSVIENTGYPGYFLIVEDFIREARKMDVSVGPGRGSAAGSVVAYCLWI 664

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T+IDP+++ LLFERFLNPDR+SMPD DIDF  + R  V+ YV NKYG  +VAQIIT+G++
Sbjct: 665  TNIDPIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMDYVINKYGSNQVAQIITYGTM 724

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIP-------------NDPAHPVSLQAIADDSRFR 499
             AK+++RD  R L +P    DR+ KLIP              D A     + +   +   
Sbjct: 725  AAKSSIRDTARVLDLPLGDADRISKLIPTMSKLGKIFGLSEKDLAKKFRAEDLEKVNELL 784

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
                 +      +  ++ LEG  R+   HA G++I    ++  VP+     SDL VTQF+
Sbjct: 785  NISDGEDLQAETVNQARVLEGSVRNTGIHACGVIITPGDITNYVPVALAKDSDLYVTQFD 844

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTL 618
               +E AGL+K DFLGLKTLTL++ ++  +  +  + +D    P DD ETY L     T+
Sbjct: 845  NSVVESAGLLKMDFLGLKTLTLIKDTVKIVKAKHDILLDPENFPLDDEETYALFQRGETV 904

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            GIFQ ES GM++ ++ ++P   +D+IA+ +LYRPGP++ I  +  RK+G E+I    P +
Sbjct: 905  GIFQYESPGMQKHMKNLKPTVFDDLIAMNALYRPGPMEYIPSFIARKHGDEEIDYDLPEM 964

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +  LKET G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK    +DK K +FI  AS 
Sbjct: 965  EEYLKETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFIEQASA 1024

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
             G+       I++    FA Y FNKSH+  YA I+YQTA++K HYP E++AA ++  M++
Sbjct: 1025 KGLDAKKLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNMND 1084

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            ++ +  F ++        +   +    + F++  
Sbjct: 1085 IKSVTFFMEECNVCVCLYLDHLLMRVIISFQLTK 1118


>gi|295426301|ref|ZP_06818961.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            amylolyticus DSM 11664]
 gi|295064040|gb|EFG54988.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            amylolyticus DSM 11664]
          Length = 1040

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 324/1026 (31%), Positives = 528/1026 (51%), Gaps = 43/1026 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  S++SLLE    + ++L         A+A+TD N  +  + F + A   GI+ ++G 
Sbjct: 6    LQNLSAFSLLESPTRVKDLLTTAKKRNYGAVALTDINVTYGLVNFFELAKEVGIKALLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
            Q+ I+          G     +   ++ +  +  GY  L+ L S + L  D G  +  + 
Sbjct: 66   QIRIN----------GLIDPTSKYDLIAIAKSNAGYHNLLRLSSAINLLTDNGNNNKILT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG--DRLYVNLQRHR 190
            L  L +   E +I++       +       + Q+    +   K++     +LY+ +   +
Sbjct: 116  LKELTKYLDEMVIIVPANQHSELV-MLSQRNDQLGADFVRELKEIVPATSQLYLGVYASK 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVT 249
              + Y    +  LA    LPLVAT +  +L+ +D+     L A+     +       + T
Sbjct: 175  NQNNYI-DYIQSLAKQFALPLVATEDCQYLNPQDHFLRKTLQAIKQGDKLQDIVPLSKQT 233

Query: 250  PDHYLKNRSEMVSIFSDLP--EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              HYL    E+ S + D    +AL NT +IA  C+  +    P+LP++ +    D     
Sbjct: 234  GSHYLAEGEELFSRYHDFYLDQALNNTWKIAEECNAEVIFQKPVLPKYHQ----DKFASS 289

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            +  L   A  GL+ R     +      + Y++RL +EL+VI RM F  YFLIV D I + 
Sbjct: 290  KEYLLYLAQNGLKARFKGKNV-----PEAYQKRLRYELDVINRMGFDDYFLIVWDVINYC 344

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +  I  GPGRGS  GS+ +YAL IT++DPL + LLFERFLNP R  MPD D+D    RR
Sbjct: 345  HRVGITTGPGRGSACGSLVSYALRITEVDPLEYHLLFERFLNPARHEMPDIDLDIPDIRR 404

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D+VI+Y+  KYG +  AQI+TFG+L AK ALRD GR   +   ++++    +P       
Sbjct: 405  DDVIKYMYRKYGMDHAAQILTFGTLAAKQALRDTGRVFGLSVVELNKWADAVPYSKGKIT 464

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              +A  +  + R    +      L + ++ LEGL RH S HAAG+VI D  ++ +  +  
Sbjct: 465  LNEAYQESRQTRLIVDSTSENKLLFQTARALEGLPRHYSIHAAGLVISDNSIASISGLQ- 523

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
              +  +PVTQ   K++E  GL+K DFLGL+ LT+L  +L  +  +G+ +D + IP +D +
Sbjct: 524  AGQLGIPVTQQTKKYVESLGLLKIDFLGLRNLTILGNTLALIKSQGINIDPNKIPLNDAK 583

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L  T  T  +FQ ES G+R+ L  + PD  ED++A+ +LYRPGP+ NI  +  RK G
Sbjct: 584  TLELFRTGKTDAVFQFESEGIRKVLRKLSPDNFEDLVAVNALYRPGPMQNIDTFIARKKG 643

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            ++ IV   P +  +L  T G+++YQEQVMQ AQ+L+G+SL EAD+LRRAM KK +  + +
Sbjct: 644  EQAIVYPDPSLKQILAPTYGILVYQEQVMQTAQILAGFSLGEADLLRRAMSKKNQALIGQ 703

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +K +FI G  + G SK +   +++ + +FA+YGFN+SHA AY  I+Y  A++K HYP  F
Sbjct: 704  EKAKFIEGTIQKGHSKQVGERVYQYIEQFANYGFNRSHAVAYTKIAYWLAYLKVHYPAAF 763

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A +     +  K + +   A++  I+I+PP +N   +DFK+   +I   L AIKG+  
Sbjct: 764  YTALLNSSGASKLKAQNYIMQAQEAGIRILPPDINQSGLDFKLLKGQILVGLKAIKGLRN 823

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               + I++     P  SL+DF  +++ K L    + +L+ AG  D    +R +LL +   
Sbjct: 824  DFTKSIVQLKK--PIKSLDDFLRKIELKYLQLDPIRALIMAGCFDHLNDNRNELLVNCKE 881

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +  Q   +N +     +             ++K +   SS R + E++VLGF  +  P
Sbjct: 882  MIENVQLTGQNLSLSE--LLGDA--------PIKKAAAPTSSQRADMEEKVLGFSTTTTP 931

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L V +   +K      +         N      ++  +  +T+KG  + + +F++ + + 
Sbjct: 932  LIVVQKYAQKFN---AKALNQVDINENSVCVGKLMKLKLIRTKKGQTMAFASFADSSSQQ 988

Query: 1028 EANFFP 1033
            E   FP
Sbjct: 989  EVTIFP 994


>gi|293571121|ref|ZP_06682160.1| DNA polymerase III subunit alpha [Enterococcus faecium E980]
 gi|291608803|gb|EFF38086.1| DNA polymerase III subunit alpha [Enterococcus faecium E980]
          Length = 1103

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 317/1028 (30%), Positives = 505/1028 (49%), Gaps = 56/1028 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     GIQPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++                 ++       GYQ+L++L SR  + ++      
Sbjct: 63   IGLHLSYTYEE-------------KNYGLLAYAKDETGYQQLMKLSSRKMIQEK------ 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRH 189
            + L  + E  T+ L+ +   +   +  AF  N  +          + +F    Y+ L  +
Sbjct: 104  MALDDMIE--TDHLVFVVPANHS-VSEAF--NKEEHFFSHWQFLLENVFTKDFYIGLSEN 158

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                     +  Q       PL A +    L +ED  A +V+  +   + +  +      
Sbjct: 159  TPDQ---LPEWYQYVTKENYPLCALHPIASLQQEDLFALEVMKHIKEGSQMPLESLSAPL 215

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P       SE   I       L   V  A+R +  +        + +        K+   
Sbjct: 216  PSANGYLLSEQEMIKRFEEAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPQGKQAGE 275

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR           +Q       + ++YR+RLD+EL+VI +M F  YFLIV D + +A +
Sbjct: 276  YLRELCY-------SQVEHRIVDYTKEYRERLDYELSVIHQMGFDDYFLIVWDVMAFAHR 328

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D   +RR+E
Sbjct: 329  NKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPDNRREE 388

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN     ++ 
Sbjct: 389  VLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLKITLTQ 448

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                   +  E   A      L + +  LEGL RH STHAAG+VI DR L +LVP+ R  
Sbjct: 449  A-YKTSRQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDRNLLELVPLQRGS 507

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
                    + M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  IP +D +T
Sbjct: 508  DEAFLTQ-YTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGQEIRLKEIPLNDAKT 566

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  RK GK
Sbjct: 567  LLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNIDTFIARKKGK 626

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK K+ +D++
Sbjct: 627  EAIHYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKDVLDEE 686

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K  F+SGA + G  +  AV ++E + KFA+YGFN+SHA AY+ + +Q A++K H+P  F 
Sbjct: 687  KSHFVSGALQQGYLEKTAVTVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHHPGAFF 746

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGT 847
             + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L AIKG+  
Sbjct: 747  TSLMNSVRHNTTKLKEYIAEARKNKLKLSSPSINQSNYSFELVNKEEIRFGLTAIKGIRR 806

Query: 848  TTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 ++     + PF S++ F  R+D + L   +L+SL   G  D    +R QL+  L+
Sbjct: 807  DFVEDVLNERKQNGPFKSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQLMLDLE 866

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
               +   +     +    ++           +  E+ +      R + E+  LG Y SGH
Sbjct: 867  GKIQNIVY-----SGGSLDLLGIM------ALKEEEVADYTLEERLKLEEEYLGVYLSGH 915

Query: 967  PLDVYKPILRKMGIKGYEESV-ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            P         ++ +    + +   +    + L  M+   ++ +T+KG  + +V  ++ + 
Sbjct: 916  P----AEGFDRLRLAKQVQLITDIVPNQPVNLLLMIKEVREIRTKKGELMAFVEGTDSSG 971

Query: 1026 EYEANFFP 1033
            E     FP
Sbjct: 972  EISVTIFP 979


>gi|218288798|ref|ZP_03493061.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218241156|gb|EED08332.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 992

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 360/938 (38%), Positives = 542/938 (57%), Gaps = 40/938 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            FVHL VH+++S  E  L + +I+    A + PA+AITDTN ++ AL F + A A GI P
Sbjct: 2   DFVHLHVHTAFSFRESLLRVGDIIRAAKACEMPAVAITDTNAMYGALSFYRLARAEGIAP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIG Q+ +   +   +  +      T   +V+L    +GY+RL  L +R           
Sbjct: 62  IIGMQVSLACDEEDAVPGRAAESLDT---VVVLAMGIDGYRRLTRLATRARWKRP---VP 115

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
            + L  L E  ++ L++L GG    +        ++ AE+RLL         +L+V +Q 
Sbjct: 116 HVTLRELAE-SSDRLVVLCGGPESRLFDFLARGEAEAAERRLLQVAGAVPAGQLFVEVQD 174

Query: 189 HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H    +R     ++QLA   ++PLVAT++  +L+ ED   H     +A     +      
Sbjct: 175 HGLRREREGLPGLIQLAKRWDVPLVATHDVRYLAREDASWHRAYAQLAR----ADAAERF 230

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            T + +   ++EM   F++LP+AL  T EIA  C+  L +H   +PR+  K+        
Sbjct: 231 ATDEFHFATKAEMADRFANLPDALRRTAEIAEMCALDLPLHQVRMPRYATKDGRP----A 286

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
           +  L        E   A  A   G  + +  +RL+ EL+VI RM ++ YFL+VADFI+ A
Sbjct: 287 DEVL-------REAARAGAARRYGALSPEVEERLERELDVICRMGYADYFLVVADFIRHA 339

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +  I  GPGRGS AGS+ AYAL ITD+DP+R  LLFERFLNP R+S+PD D DF  +RR
Sbjct: 340 HQQGISTGPGRGSAAGSLVAYALRITDVDPIRHKLLFERFLNPARVSLPDIDTDFEFERR 399

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            EVIRYV  KYG +RVAQI TFG+LQA+AALRD GR      + VDRL KL+P    H  
Sbjct: 400 GEVIRYVIEKYGRDRVAQIGTFGTLQARAALRDAGRMTGADPALVDRLAKLVPGV-VHAS 458

Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              A  + + FRE     P   RL E ++++E L  H S HAAG++I   P++  +P+  
Sbjct: 459 LDGAYQESAAFRELVDGSPDARRLFEAAKRIEDLPHHTSIHAAGVIISPEPIADWIPLDL 518

Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
               D PVT + M+ +E  G +K DFLGLKTLTL+ + LD + +R  V +D   +   D 
Sbjct: 519 AA-DDTPVTAYPMEDVEALGFVKMDFLGLKTLTLIDRCLDSIRKRTGVSIDWRQVNEGDP 577

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            TY LLT   T G+FQLES+GMR+ L  ++P  ++D+IA++SL RPGP++NI  + + K+
Sbjct: 578 ATYALLTRADTNGVFQLESAGMRRVLRELRPTSLDDVIAVISLNRPGPMENIPAFCDAKH 637

Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
           G+  +   HP ++P+L +T GVI+YQEQ+MQIA  ++G+SL+EAD+LRRA+ KK +E +D
Sbjct: 638 GRRPVTYPHPDLEPILADTYGVIVYQEQIMQIASQMAGFSLAEADLLRRAVSKKKREILD 697

Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
           +++ RF+ G  + G S+  A  ++EL+ +FADYGFN+SHAAAYAV++++TA+++ H+  +
Sbjct: 698 EERSRFVDGCVRRGYSEETAREVYELIVRFADYGFNRSHAAAYAVLAFRTAYLRAHFLPD 757

Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGV 845
           FLAA +TL M   +KI+ + QDAR+  I + PPSV      + V  D  +   L +I+ V
Sbjct: 758 FLAALLTLSMGAPDKIRLYEQDARRHGIAVRPPSVLRSERGYTVEEDGSLRAGLISIRNV 817

Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS------RM 899
           G     HI+   ++KPF SL DF  R++ + +NR+ L+SL  AGALD F         R 
Sbjct: 818 GEAAVDHILSLRSEKPFASLVDFLRRIEPRIVNRKALDSLFAAGALDEFFPENASRDVRR 877

Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
           Q+ +  + + +  +  +        ++F   +   + +
Sbjct: 878 QMYE--EALLRAEESRQWAA----LDLFVEAEAKSASE 909


>gi|256788653|ref|ZP_05527084.1| DNA polymerase III, alpha chain [Streptomyces lividans TK24]
 gi|289772548|ref|ZP_06531926.1| DNA polymerase subunit III [Streptomyces lividans TK24]
 gi|289702747|gb|EFD70176.1| DNA polymerase subunit III [Streptomyces lividans TK24]
          Length = 1185

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 265/1071 (24%), Positives = 440/1071 (41%), Gaps = 74/1071 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL   S +S   GA     + ++       A+A+TD + L  A+ F++    AG++
Sbjct: 2    PGFTHLHTVSGFSARYGASHPERLAERAFERGMDALALTDRDTLAGAVRFAKACAKAGVR 61

Query: 69   PIIGCQL---------------DIDMQDNLKMTNQGKTPFPTVPSIVLLVST-AEGYQRL 112
            P+ G +L                +           G     + P +  L    A G+  L
Sbjct: 62   PLFGAELAVAAPESAAADRTETSVRRDRRRAPVRGGAFVDESAPRVTFLARDGARGWADL 121

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
              LVS  +  +    S  +          +GL +L G     + RA        A + L+
Sbjct: 122  CRLVSAAHTAE---GSPLLSWPD---NHADGLTVLLG-PDSDVGRALAAGRPDRAARLLV 174

Query: 173  TFKKLFGDRLYVNLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
             +++++GD L +    H             ++ V  A    +  V +N   +      E 
Sbjct: 175  PWREVYGDALRLEAVWHGRTGIGPGSLRLAARTVGFAAEQGVRPVLSNAVRYADPGQGEV 234

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
             DVL A      +                 +   +    +  A        R        
Sbjct: 235  ADVLDAARRLVPIDATKELDSGEAWLKDAGAMRHAAERIVESAGFRRDTAHRLLEQTRAT 294

Query: 288  HAPILPRFIEKECDDIQKEEENEL----RNKAVAGLEVRLAQGAIAKGYHA----QDYRQ 339
             A  L    +          E  L    R  A   L  R A G + +GY      ++Y +
Sbjct: 295  AAECLVDPEDDLGMGAVHFPEPHLVGAGRRTAQRALASRAAAGMVRRGYDRRRDHREYWE 354

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            R+  EL++IA   F+ YFL VA  +   +   I V   RGSGAGS+  + L I   DP+ 
Sbjct: 355  RMHHELDIIAHHGFASYFLTVAQVVDDVRHMGIRVA-ARGSGAGSLVNHLLGIAHADPVE 413

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              LL ERFL+ +R+ +PD DID    RR EV R +  ++G ERVA +    + + + A+R
Sbjct: 414  HGLLMERFLSKERVVLPDIDIDVESARRLEVYRAIIGRFGTERVATVAMPETYRVRHAIR 473

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL----ADPSVDRLLEIS 515
            DVG AL M  +++DR+ K  P+  A                A            RL E+ 
Sbjct: 474  DVGAALSMDPAEIDRVAKSFPHIRARDARAALEELPELKELAGESRRDGGGRYGRLWELV 533

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + L+ L R  + H  G+++ D  L    P+       LP+ QF+   +E  GL+K D LG
Sbjct: 534  EGLDALPRGVAMHPCGVLLSDASLLSRTPVVPTSGEGLPMAQFDKDDVEDLGLLKLDVLG 593

Query: 576  LKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            ++  + +  ++  + +  G ++DL  +P  D  TY ++ +  TLG FQ+ES G R  +  
Sbjct: 594  VRMQSAMAHAVAEVKRATGTEIDLDAVPEGDPATYRMIRSAETLGCFQIESPGQRDLVGR 653

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +QP    D++  +SL+RPGP+   +   +   ++G+  +   H  +   L  T GV+++ 
Sbjct: 654  LQPATFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRHPHEDLAEPLAGTYGVVVFH 713

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQ++ I  +++G    EAD +RR +     E   + K  F   A+ NG         +E+
Sbjct: 714  EQIIDIVAIMTGCGRGEADRVRRGLSD--PESQGRIKVWFAQHATANGYDAETIQRTWEI 771

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +    DAR+ 
Sbjct: 772  VEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARRR 830

Query: 813  NIQIMPPSVNTPCVDFKVG-----------DNRIYYSLAAIKGVGTTTARHIMEASADKP 861
             + I+P  VN   V  ++               +  +L+ + G+    A  I      +P
Sbjct: 831  GVPILPLDVNESGVAHRIELVSESGSRKPATWGLRLALSDVHGISEAEAERIA---TGQP 887

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + SL DF  R      +R +   L   GALD FG +R  L   L  + + A    +    
Sbjct: 888  YASLLDFWERARP---SRPLAGRLAQVGALDAFGANRRDLQLHLTELHRGA----RGGRG 940

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
                +    K   +            S  +   E  VL    S + +D ++  LR++G+ 
Sbjct: 941  DQLPLTGGRKTASAG------LPDLTSEEKLSAELGVLSMDASRNLMDDHRTFLRELGVV 994

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +       G  + +A    + Q    R G R+ + T  + +   +  FF
Sbjct: 995  SAKRLREARHGETVLVAGAKAATQTPPVRSGRRVIFSTLDDGSGLVDLAFF 1045


>gi|258424118|ref|ZP_05687000.1| DNA polymerase subunit III [Staphylococcus aureus A9635]
 gi|257845739|gb|EEV69771.1| DNA polymerase subunit III [Staphylococcus aureus A9635]
          Length = 1065

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 314/1022 (30%), Positives = 507/1022 (49%), Gaps = 81/1022 (7%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G 
Sbjct: 5    LNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIFGM 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + +    N   T             V+L     G + L +L S + +         +  
Sbjct: 65   TIYVTNGLNTVET-------------VVLAKDNNGLKDLYQLSSEIKMNALE----HVSF 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              L+      +I              F N +      +  F     +  Y+    HR   
Sbjct: 108  ELLKRFSNNMII-------------IFKNVADEHRDIVQVFDSH--EDTYL---DHRSV- 148

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +VQ      +  V   N  + + +D +    L A+  +T +             
Sbjct: 149  ------LVQ-----GIKHVWIQNVCYQTRQDADTISALAAIRDNTKLD-----------L 186

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            + ++ +  + F    E  +  +         +            +      +   +E   
Sbjct: 187  IHDQEDFGAHFLTEKEIKQLDINQEYLTQVDVIAQKCNAELNYHQSLLPQYQTPNDESAK 246

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            K +      L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ 
Sbjct: 247  KYLW---RVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVM 303

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++VI+Y
Sbjct: 304  VGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVIQY 363

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            VQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +      
Sbjct: 364  VQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQI 423

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            DD  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +      
Sbjct: 424  DD--FKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG-- 479

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612
             +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPF+D + + LL
Sbjct: 480  LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFEDQKVFELL 539

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+ 
Sbjct: 540  SQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQ 599

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ F
Sbjct: 600  YLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHF 659

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  +
Sbjct: 660  IEGAKQNGYHEGISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANIL 719

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + + 
Sbjct: 720  SNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKV 779

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +   
Sbjct: 780  IVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDG 839

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
               +E++       +F       + K   E       ++  + E+  LGFY S HP+D  
Sbjct: 840  DLNIEQD-----GFLFD----ILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD-- 888

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
              +          +         I +       +Q +T+ G  + +VT ++  +  +   
Sbjct: 889  -KMFVAKQYLTIFKLSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLDGVI 945

Query: 1032 FP 1033
            FP
Sbjct: 946  FP 947


>gi|85712559|ref|ZP_01043606.1| DNA polymerase III alpha subunit [Idiomarina baltica OS145]
 gi|85693550|gb|EAQ31501.1| DNA polymerase III alpha subunit [Idiomarina baltica OS145]
          Length = 1027

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 255/1031 (24%), Positives = 437/1031 (42%), Gaps = 68/1031 (6%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             +  L   S+YS L  A   +  +D+       AIA+TD  ++   +   + A    I+ 
Sbjct: 2    RYAELHCLSNYSFLRSASHPSEFVDRATELGYEAIAVTDECSVAGVVRAYEAARERPIKL 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +  +                P     V+L  T   Y  L E ++      + K S 
Sbjct: 62   IVGSEFML----------------PGAGVFVVLCPTRSAYAGLCEKITLFRQRSE-KGSY 104

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
             + L        E L++                S   A       K+ + DRL++  +RH
Sbjct: 105  AVQLDDFLHGFDEALLLWWPQCDTE------GLSYAKALNLGHQLKRHWRDRLWLLYERH 158

Query: 190  -RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
             +  D+     V +L+   +LP+ A+N ++   E      D+L A   +  + Q      
Sbjct: 159  YQHNDKALFRMVCRLSQQVKLPVTASNGAVMHDENRQPLLDILSATNANQSLVQ-HPEVC 217

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              +   + R             L  + +IA RC+F L       P  +  +        +
Sbjct: 218  ALNSERRLRDLKALQACYPANWLTESAKIADRCTFCLSELRYEYPAELVPKGM----TAQ 273

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR+    G + R  +G        +    + + EL +IA   +  +FL + D +++A+
Sbjct: 274  QYLRHLTEQGAQQRYPEGV------PESVVSQYEKELKLIAEQHYEYFFLTIYDLVEFAQ 327

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I    GRGS A SV  Y L IT ++P +F +LFERF++ +R   PD D+DF  +RR+
Sbjct: 328  SQGIFY-QGRGSAANSVVCYCLKITAVNPAQFDVLFERFISKERDEPPDIDVDFEHERRE 386

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y+  KYG +R A   T    + K+A RDVG+AL     Q+    + +        +
Sbjct: 387  EVIQYIYKKYGRKRAALAATVIRYRFKSAFRDVGKALGFSEQQLQTYRQNLDR---RDKT 443

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                   +    A +       LL ++++L G  RH S H  G VI    L+QLVP+   
Sbjct: 444  QNWKEQLAEQYPALVQSKRGQHLLSLTEQLMGFPRHLSQHVGGFVIAANELTQLVPIENA 503

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607
               D  V Q++   +E   L+K D L L  LT L+KSL  L  +R + + L+ IP +D  
Sbjct: 504  SMRDRTVIQWDKDDLEVLKLLKVDVLALGMLTALRKSLGLLKEKRNLTLGLADIPQEDPV 563

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665
             Y  L    ++G+FQ+ES      L  ++P+   D++  +++ RPGPI   +V+    R+
Sbjct: 564  VYRALQQGDSVGVFQIESRAQMNMLPRLKPNTFYDLVIQIAIVRPGPIQGDMVHPYLRRR 623

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             GKEK+      +  +L+ T GV I+QEQ +++A + +G+S  EAD LRRAM        
Sbjct: 624  AGKEKVDYPSDEVRQVLQRTLGVPIFQEQAIKLAMVAAGFSGGEADQLRRAMAAWKSTGK 683

Query: 726  -DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
              + + + ISG    G S++ A  +F  +  F  YGF +SH+A++A ++Y +AW+K HYP
Sbjct: 684  LQQFEHKLISGMRARGYSESFAQRLFHQICGFGQYGFPESHSASFANLAYASAWLKVHYP 743

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---GDNRIYYSLAA 841
              F    +           +  QDA++  ++ +P  VN    D++      N +   L  
Sbjct: 744  AAFFVGLLNSLPMGFYSPSQLIQDAKRHGVRFLPADVNYSQWDYQWLADQGNCVRIGLRQ 803

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            I G+  +    ++ + AD  F + E          L+   +++L  A AL      R Q 
Sbjct: 804  IFGLSRSRTALLLNSRADALFANTEQLRR----GGLHESDIQALAKADALTSLSGHRYQ- 858

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
                      AQW   + +++   +F       S+          + +   + +    G 
Sbjct: 859  ----------AQWDALSLSDQQMPLFNEVADNKSEISIKP-----SETEDIKADYASTGL 903

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
                HP+ + +           E       G  I +  +V  +Q+  T+ G  + ++T  
Sbjct: 904  SLRRHPMALIRNHPEVTKSITAETLAGCRSGQVIEVIGLVTCRQRPGTKSG--VTFLTLE 961

Query: 1022 EPAKEYEANFF 1032
            +         +
Sbjct: 962  DETGNMNVVVW 972


>gi|119774998|ref|YP_927738.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
 gi|119767498|gb|ABM00069.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
          Length = 1030

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 230/1035 (22%), Positives = 410/1035 (39%), Gaps = 74/1035 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S+YS L GA   + ++ + A     AIAITD  ++   ++    A  AGI  I
Sbjct: 2    YAELHAISNYSFLRGASHPHELVAEAARLGYSAIAITDECSVAGVVKAHMAAVDAGISLI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +  +                      VLL ++  GY  L  L+SR       K   R
Sbjct: 62   VGSEFRLQQGT-----------------FVLLATSRAGYGALCRLISRGRRR-APKGEYR 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFF---FNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            I L  L     + +++                  +     ++         G R  +  Q
Sbjct: 104  INLDDLLSPLPDCVLLWRPPMPQNPGTDIAATEQHWFATQKQLAKQLTPWQGRRYLLAEQ 163

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                     +  +++L+   ++P VA  +    S       DVL  +     + + +   
Sbjct: 164  CLEAAGSLWQRYLMRLSGLCDIPCVAAGDVRMHSAARQPLLDVLTCIRLGLRLDEAEGHL 223

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 +       +       E + NT +IA +C F +       P  +           
Sbjct: 224  CQNAEHYLRPLGSI-HRRYPQEWIANTQKIASQCRFSMAELRYEYPAELVPAGF----SA 278

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L  +   G   R               +++   EL +I  +++  +FL + D +++A
Sbjct: 279  SEYLAREVAKGARRRYG------LAVPAAVKRQYLAELKLIHELEYEYFFLTIYDIVRFA 332

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++  I    GRGS A SV  + L IT++DP R ++LFERF++ +R   PD D+DF  +RR
Sbjct: 333  RRKRIL-HQGRGSAANSVVCFCLGITEVDPTRVNMLFERFISKERHEPPDIDVDFEHERR 391

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KYG  R A   +  + + K+A+ +VG+ L +    V RL + I        
Sbjct: 392  EEVIQYIYRKYGRHRAALAASVITYRLKSAMGEVGKVLGLDRELVARLIQGIDRRD---- 447

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                        +     PS D    + Q L G  RH S H  G VI   PL++LVP+  
Sbjct: 448  -----PSHPWREQLAAQLPSADMFGYLVQSLLGFPRHLSQHVGGFVISAGPLAELVPVEN 502

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
                D  V Q++   +E  GL+K D L L  LT ++K  + +++      +  I  +D  
Sbjct: 503  AAMEDRTVIQWDKDDLEALGLLKVDVLALGMLTAIRKCFELISRHQQPFGMRSIKAEDPN 562

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
             Y +L+   ++G+FQ+ES      L  ++P C  D++  +++ RPGPI   +V+   +  
Sbjct: 563  VYRMLSRGDSMGVFQVESRAQTSMLPRLRPACYYDLVIQIAIVRPGPIQGDMVHPFLRRR 622

Query: 668  K--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            K  E +      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM        
Sbjct: 623  KGLEAVTYPSEAVKAVLERTMGVPIFQEQVIKLAMVAAGFSGGEADALRRAMASWKHTGK 682

Query: 726  -DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
                +++ + G +  G S+  A  IF  +  F +YGF +SH+A++A+++Y +A++K ++P
Sbjct: 683  LWSFEQKLLDGMAARGYSEDFARQIFRQIQGFGEYGFPESHSASFALLAYVSAYLKLYHP 742

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF----KVGDNRIYYSLA 840
              F  A +  +        +  QD R+  +++    +N    D           I     
Sbjct: 743  AAFCCALLNSQPMGFYSPSQLLQDVRRHGVEVFDVCINHSQWDSSLVKTATGFAIRLGFR 802

Query: 841  AIKGVGTTTARHIMEASADKPFDSLED---FCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             +KG+     + +++  +   F  L +      R   + L                    
Sbjct: 803  QVKGLKEQAMQRLVDVRSAAGFAHLSEISMLLDRHALELLAAADA--------FRLLSGH 854

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R Q    L            +       +F           T       N+    + + R
Sbjct: 855  RFQSRWQL------------SARQASLPLFDDLPEPLKPVGTEPSLDAPNAVQCLKADYR 902

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
              G     HP+ + +           +    T  G  + +A +V  +Q+  T  G  + +
Sbjct: 903  SKGLSLGQHPMALLRIAGLLGKSLTAKALENTRHGQLVTVAGVVTGRQRPGTASG--VTF 960

Query: 1018 VTFSEPAKEYEANFF 1032
            +T  +         +
Sbjct: 961  ITLEDETGNTNLIVW 975


>gi|21283375|ref|NP_646463.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            MW2]
 gi|49486528|ref|YP_043749.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            MSSA476]
 gi|297207585|ref|ZP_06924020.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus ATCC 51811]
 gi|300911666|ref|ZP_07129110.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus TCH70]
 gi|38604909|sp|Q8NW58|DPO3A_STAAW RecName: Full=DNA polymerase III subunit alpha
 gi|60392206|sp|Q6G8M4|DPO3A_STAAS RecName: Full=DNA polymerase III subunit alpha
 gi|21204815|dbj|BAB95511.1| DNA POLYMERASE III ALPHA SUBUNIT [Staphylococcus aureus subsp. aureus
            MW2]
 gi|49244971|emb|CAG43432.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            MSSA476]
 gi|296887602|gb|EFH26500.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus ATCC 51811]
 gi|300887087|gb|EFK82288.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus TCH70]
          Length = 1065

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 311/1022 (30%), Positives = 499/1022 (48%), Gaps = 81/1022 (7%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G 
Sbjct: 5    LNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFGM 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + +    N   T             V+L    +G + L +L S + +         +  
Sbjct: 65   TIYVTNGLNTVET-------------VVLAKNNDGLKDLYQLSSEIKMNALE----HVSF 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              L+      +I+               +  +   +   T    + D L +++Q      
Sbjct: 108  ELLKRFSNNMIIIF----------KKVGDQHRDIVQVFETHNDTYMDHLSISIQ------ 151

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                              V   N  + + +D +    L A+  +T +           H+
Sbjct: 152  --------------GRKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGAHF 197

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            L  +                           +            +      +   +E   
Sbjct: 198  LTEKEINQLDI-----------NQEYLTQVDVIAQKCDAELKYHQSLLPQYETPNDESAK 246

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            K +      L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ 
Sbjct: 247  KYLW---RVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVM 303

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ VI+Y
Sbjct: 304  VGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQY 363

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            VQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +      
Sbjct: 364  VQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQI 423

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            DD  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +      
Sbjct: 424  DD--FKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG-- 479

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612
             +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + LL
Sbjct: 480  LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELL 539

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+ 
Sbjct: 540  SQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQ 599

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ F
Sbjct: 600  YLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHF 659

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  +
Sbjct: 660  IEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANIL 719

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + + 
Sbjct: 720  SNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKV 779

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +   
Sbjct: 780  IVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDG 839

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
               +E++       +F       + K   E       ++  + E+  LGFY S HP+D  
Sbjct: 840  DLNIEQD-----GFLFD----ILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD-- 888

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                         +         I +       +Q +T+ G  + +VT ++  +  +   
Sbjct: 889  -KKFVAKQYLTIFKLSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLDGVI 945

Query: 1032 FP 1033
            FP
Sbjct: 946  FP 947


>gi|329733207|gb|EGG69544.1| putative DNA polymerase III subunit alpha [Staphylococcus aureus
            subsp. aureus 21193]
          Length = 1065

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 310/1022 (30%), Positives = 504/1022 (49%), Gaps = 81/1022 (7%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G 
Sbjct: 5    LNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFGM 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + +    N   T             V+L    +G + L +L S + +         +  
Sbjct: 65   TIYVTNGLNTVET-------------VVLAKNNDGLKDLYQLSSEIKMNALE----HVSF 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              L+      +I+               +  +   +   T    + D L +++Q      
Sbjct: 108  ELLKRFSNNMIIIF----------KKVGDQHRDIVQVFETHNDTYMDHLSISIQ------ 151

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                              V   N  + + +D +    L A+  +T +             
Sbjct: 152  --------------GRKHVWIQNVCYQTRQDADTISALAAIRDNTKLD-----------L 186

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            + ++ +  + F    E  +  +         +            +      +   +E   
Sbjct: 187  IHDQEDFGAHFLTEKEIKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQYETPNDESAK 246

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            K +      L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ 
Sbjct: 247  KYLW---RVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVM 303

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ VI+Y
Sbjct: 304  VGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQY 363

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            VQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +      
Sbjct: 364  VQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQI 423

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            DD  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +      
Sbjct: 424  DD--FKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG-- 479

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612
             +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + LL
Sbjct: 480  LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELL 539

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+ 
Sbjct: 540  SQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQ 599

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ F
Sbjct: 600  YLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHF 659

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I GA +NG  + I+  IF+L+ KF+DYGF ++HA +Y+ I+Y  +++K HYP  F A  +
Sbjct: 660  IEGAKQNGYHEDISKQIFDLILKFSDYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANIL 719

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + + 
Sbjct: 720  SNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKV 779

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +   
Sbjct: 780  IVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDG 839

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
               +E++       +F       + K   E       ++  + E+  LGFY S HP+D  
Sbjct: 840  DLNIEQD-----GFLFD----ILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD-- 888

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                         +         I +       +Q +T+ G  + +VT ++  +  +   
Sbjct: 889  -KKFVAKQYLTIFKLSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLDGVI 945

Query: 1032 FP 1033
            FP
Sbjct: 946  FP 947


>gi|238855206|ref|ZP_04645525.1| DNA polymerase III subunit alpha [Lactobacillus jensenii 269-3]
 gi|260664570|ref|ZP_05865422.1| DNA polymerase III alpha-chain [Lactobacillus jensenii SJ-7A-US]
 gi|282932500|ref|ZP_06337925.1| DNA polymerase III subunit alpha [Lactobacillus jensenii 208-1]
 gi|238832098|gb|EEQ24416.1| DNA polymerase III subunit alpha [Lactobacillus jensenii 269-3]
 gi|260561635|gb|EEX27607.1| DNA polymerase III alpha-chain [Lactobacillus jensenii SJ-7A-US]
 gi|281303449|gb|EFA95626.1| DNA polymerase III subunit alpha [Lactobacillus jensenii 208-1]
          Length = 1039

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 319/1026 (31%), Positives = 524/1026 (51%), Gaps = 44/1026 (4%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS+SLL+  + ++ ++         ++A+TD N  +  ++F   A  A + P++G 
Sbjct: 6    LQTLSSFSLLKSPILVDELVKDAVDKGYSSLALTDINVTYGLVDFYLAAKKANLNPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-DQGKQSVRIC 132
             + ++          G         ++ +    EGY+ L+ L S + L  D G +   + 
Sbjct: 66   TIRLN----------GMIDQAHRYDLISIAKNNEGYKNLLRLSSAINLKTDNGDERKVLT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
            L  + +  ++ + ++    +  + R    N+ ++    L   +K+      LY+ +  + 
Sbjct: 116  LKQVAKYLSDQIFIIPANVTSEL-RYLSENNEKLGSDYLRELQKIIPSSSDLYLGV--YA 172

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD---RPR 247
              ++   + V  LA    LPL A  +  +L   D      L A+     +         +
Sbjct: 173  SKNQPYINYVKALAAQFNLPLAAAEDVQYLQASDQFLVKTLRAIEQGQKLVDTSSLALQK 232

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +               + + EAL N  +IA  C   +    P LPR+ +      +   
Sbjct: 233  GSHYLRSSGELVAAYNENGIIEALHNAAKIADECKAEVIFTQPELPRYRQNFAPSSKI-- 290

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     GLE R     I      + Y++RLD+EL +I +M F  YFLIV D I +A
Sbjct: 291  --YLRQLVQKGLENRFKGQNI-----PEIYQKRLDYELKIINQMGFDDYFLIVWDVINYA 343

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
               +I  GPGRGS AGS+ AY+L IT++DP++++LLFERFLNP R  MPD D+D   +RR
Sbjct: 344  HSVDITTGPGRGSAAGSLVAYSLAITEVDPIKYNLLFERFLNPARAQMPDIDLDIPDNRR 403

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+I+Y+  KYG +  AQI+TFG+L AK ALRD  R   +   Q  +    IP       
Sbjct: 404  DEIIKYMFEKYGMDHAAQILTFGTLAAKQALRDCARVFGLTTVQASKFTHAIPFSKVKIT 463

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              QA  +    +    A      L   + +LEG+ RHAS HAAG+VI D+ ++Q+  +  
Sbjct: 464  LSQAYQESKALQLLVNASELNKLLFRTAMRLEGIPRHASIHAAGLVISDKSIAQIAGLQ- 522

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
                 +PVTQ     +E+ GL+K DFLGL+ LT+L ++++ LA+ G+K+D   IP +D +
Sbjct: 523  AGTLGIPVTQQTKAHVEELGLLKIDFLGLRNLTILGETVELLAKDGIKLDPKQIPLNDAK 582

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T  +FQ ES G++  L+ + PD  ED++A+ +LYRPGPI NI  + NRK G
Sbjct: 583  TLQLFQKGQTDAVFQFESQGIKNVLKRLHPDSFEDVVAVNALYRPGPIQNIDHFINRKQG 642

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KE I      +  +LK T G+++YQEQVMQ AQ+++G+SL EAD+LRRAM KK ++ +D+
Sbjct: 643  KEAITYPDSSLAQLLKPTYGILVYQEQVMQTAQIMAGFSLGEADLLRRAMSKKKQDLIDQ 702

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++E+FI+GA KNG  +  A  ++  + +FA+YGFN+SHA AY+ I++  A++K HYP  F
Sbjct: 703  EREKFITGAVKNGHPQATASKVYAYIEQFANYGFNRSHAVAYSKIAFWLAYLKVHYPAAF 762

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
              A +     N  K  ++   A++  ++I+PP +N    D+ + + +I   L AIKG+  
Sbjct: 763  FTALLNSVSANRIKAGEYITQAQEVGVKILPPDINQSQTDYSLLNGQIQVGLKAIKGIRV 822

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
               ++I     +  F SL DF  ++D+K L+ + + +++ AG  D    +R  LL +   
Sbjct: 823  DFLKNIANLPKN--FSSLADFLRKIDAKFLSEQTIAAMIKAGCFDKIDKNRKMLLLNCKE 880

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            I +  ++  +N T     +     G     I LE+    N++ +   E+ VLGF  +  P
Sbjct: 881  IVENIKFTGQNET-----LSEGLGG-----IRLEQAPAPNANEKATMEEEVLGFSTTKTP 930

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            + V +    +   +          G  +     ++  +  +T+KG  + + TF + + E 
Sbjct: 931  ILVVQKYAERFNAQTLNSFTVNETGIAV---GKLIKLKLIRTKKGDTMAFSTFRDASSEQ 987

Query: 1028 EANFFP 1033
            E   FP
Sbjct: 988  EITIFP 993


>gi|227550594|ref|ZP_03980643.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257897003|ref|ZP_05676656.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|293378695|ref|ZP_06624853.1| DNA polymerase III, alpha subunit [Enterococcus faecium PC4.1]
 gi|227180302|gb|EEI61274.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257833568|gb|EEV59989.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|292642623|gb|EFF60775.1| DNA polymerase III, alpha subunit [Enterococcus faecium PC4.1]
          Length = 1103

 Score =  529 bits (1362), Expect = e-147,   Method: Composition-based stats.
 Identities = 318/1028 (30%), Positives = 508/1028 (49%), Gaps = 56/1028 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +      IQPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEEIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++                 ++       GYQ+L++L SR  + ++      
Sbjct: 63   IGLHLSYTYEE-------------KNYGLLAYAKDETGYQQLMKLSSRKMIQEK------ 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRH 189
            + L  + E  T+ L+ +   +   +  AF  N  +          + +F    Y+ L  +
Sbjct: 104  MALDDMIE--TDHLVFVVPATHS-VSEAF--NKEEHFFSHWQFLLENVFTKDFYIGLSEN 158

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                     +  Q       PL A +    L +ED  A +V+  +   + +  +      
Sbjct: 159  TPNQ---LPEWYQYVTKENYPLCALHPIASLQQEDLFALEVMKHIKEGSQMPLESLSAPL 215

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P       SE   I       L   V  A+R +  +        + +        K+   
Sbjct: 216  PSANGYLISEQEMIKRFEEAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPQGKQAGE 275

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR    + +E R+         + ++YR+RLD+EL+VI +M F  YFLIV D + +A +
Sbjct: 276  YLRELCYSQVEHRIVD-------YTKEYRERLDYELSVIHQMGFDDYFLIVWDVMAFAHR 328

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D   +RR+E
Sbjct: 329  NKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPDNRREE 388

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN     ++ 
Sbjct: 389  VLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLKITLTQ 448

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                   +  E   A      L + +  LEGL RH STHAAG+VI DR L +LVP+ R  
Sbjct: 449  A-YKTSRQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDRNLLELVPLQRGS 507

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
                    + M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  IP +D +T
Sbjct: 508  DEAFLTQ-YTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGQEIRLKEIPLNDAKT 566

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  RK GK
Sbjct: 567  LLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNIDTFIARKKGK 626

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK K+ +D++
Sbjct: 627  EAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKDVLDEE 686

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K  F+SGA + G S+  AV ++E + KFA+YGFN+SHA AY+ + +Q A++K H+P  F 
Sbjct: 687  KSHFVSGALQQGYSEKTAVTVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHHPGAFF 746

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGT 847
             + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L AIKG+  
Sbjct: 747  TSLMNSVRHNTTKLKEYIAEARKNKLKLSSPSINQSNYSFELVNKEEIRFGLTAIKGIRR 806

Query: 848  TTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 ++     + PF S++ F  R+D + L   +L+SL   G  D    +R QL+  L+
Sbjct: 807  DFVEDVLNERKQNGPFKSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQLMLDLE 866

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
               +   +     +    ++           +  E+ +      R + E+  LG Y SGH
Sbjct: 867  GKIQNIVY-----SGGSLDLLGIM------ALKEEEVADYTLEERLKLEEEYLGVYLSGH 915

Query: 967  PLDVYKPILRKMGIKGYEESV-ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            P         ++ +    + +   +    + L  M+   ++ +T+KG  + +V  ++ + 
Sbjct: 916  P----AEGFDRLRLAKQVQLITDIVPNQPVNLLLMIKEVREIRTKKGELMAFVEGTDSSG 971

Query: 1026 EYEANFFP 1033
            E     FP
Sbjct: 972  EISVTVFP 979


>gi|29833097|ref|NP_827731.1| DNA polymerase III alpha subunit [Streptomyces avermitilis MA-4680]
 gi|29610219|dbj|BAC74266.1| putative DNA polymerase III alpha subunit [Streptomyces avermitilis
            MA-4680]
          Length = 1161

 Score =  529 bits (1362), Expect = e-147,   Method: Composition-based stats.
 Identities = 268/1071 (25%), Positives = 448/1071 (41%), Gaps = 75/1071 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL   S +S   GA     + ++ +     A+A+TD + L   + F++   AAG++
Sbjct: 2    PGFTHLHTVSGFSPRYGASHPERLAERASERGMDALALTDRDTLAGTVRFAKACAAAGVR 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTP-------FPTVPSIVLLVS-TAEGYQRLIELVSRMY 120
            P+ G +L +      +   + + P         + P +  L    A G+  L  +V+  +
Sbjct: 62   PLFGAELMVASAGEREHGGKRRAPVRGGAFIDESTPRVTFLAREGAAGWADLCRIVTASH 121

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                G+    +          EGL +L G  +  + RA        A + L  +++++GD
Sbjct: 122  T---GEGQPLLPWPD---NHAEGLTVLLG-PASDVGRALAAGRPDRAARLLAPWREVYGD 174

Query: 181  RLYVNLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             L +    H             ++ V  A    +  V +N   +         DVL A  
Sbjct: 175  ALRLEAVWHGRKGTGPGSLRLAARTVGFAAEQRVRPVLSNAVRYADPGMGPVADVLDAAR 234

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                V                 + + +    +  A        R         A  L   
Sbjct: 235  RLVPVDPTKELDSGEAWLKDADAMLGAAERIVEAAGYRRDTAYRLLEQTQATAAECLVDP 294

Query: 296  IEKECDDIQKEEENEL----RNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLDFELNVIAR 350
             +          E  L    R  A   L  R A G +  GY   +DY +R+  EL++IA 
Sbjct: 295  EDDLGIGTVHFPEPHLVGAGRRTAQRVLTSRAAAGMVRHGYADRRDYWERMHRELDIIAH 354

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
              F+ YFL VA  +   +   I V   RGSGAGS+  + L I   DP+   LL ERFL+ 
Sbjct: 355  HGFASYFLTVAQVVDDVRDMGIRVA-ARGSGAGSLVNHLLGIAHADPVEHGLLMERFLSK 413

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
             R  +PD DID    RR EV R +  ++G ERVA +    + + + A+RDVG AL M  +
Sbjct: 414  RRAVLPDIDIDVESARRIEVYRAIIGRFGTERVATVAMPETYRVRHAIRDVGAALSMDPA 473

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREA----RLADPSVDRLLEISQKLEGLYRHAS 526
             +DR+ K  P+  A        A+    RE     R       +L E+ + L+ L R  +
Sbjct: 474  DIDRIAKSFPHIRARDARAAL-AELPELRELAGEFRREGGRYGKLWELVEALDALPRGVA 532

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             H  G+++ D  L    P+       LP++QF+ + +E  GL+K D LG++  + +  ++
Sbjct: 533  MHPCGVLLSDASLLARTPVVPTSGEGLPMSQFDKEDVEDLGLLKLDVLGVRMQSAMAHAV 592

Query: 587  DFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
              + +  G  VDL  +P  D  TY L+ +  TLG FQ+ES G R  +  +QP    D++ 
Sbjct: 593  AEVERATGTSVDLDAVPPGDPATYRLIRSAETLGCFQIESPGQRDLVGRLQPATFHDLVV 652

Query: 646  LVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
             +SL+RPGP+   +   +   ++G+  +   HP ++  LKET GV+++ EQ++ I  +++
Sbjct: 653  DISLFRPGPVAADMVRPFIEARHGRAPVRCPHPDLEGPLKETYGVVVFHEQIIDIVDIMT 712

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G   +EAD +RR +     E   + +  F   A+  G         +E++  F  YGF K
Sbjct: 713  GCGRAEADRVRRGLSD--PESQGRIRFWFAQHAAVRGYDAETIQRTWEIVEAFGSYGFCK 770

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            +HA A+AV +YQ+AW+K H+P  F A  +T +     K +    DAR+  + ++P  VN 
Sbjct: 771  AHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARRRGVPVLPLDVNR 829

Query: 824  PCVDFKVG----------------------DNRIYYSLAAIKGVGTTTARHIMEASADKP 861
              V  ++                          +  +L+ + G+    A  I +    +P
Sbjct: 830  SAVAHRIELVSESGDPSGGSSGGPSGGSPGRWGVRLALSDVHGISEAEAARIAD---GQP 886

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + SL DF  R      +R + + L   GALD FG +R  L   L  + + A+        
Sbjct: 887  YASLLDFWERARP---SRPLAQRLAQVGALDAFGANRRDLQLHLTELHRGARGG----GG 939

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
                +        +           +S+ R   E  VL    S H +D ++  L ++ + 
Sbjct: 940  GQLPLTGGRGTASAG------LPDLSSAERLSAELGVLSMDASRHLMDDHREFLDELRVV 993

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                      G  + +A    + Q    R G R+ + T  +     +  FF
Sbjct: 994  SARRLREARHGETVLVAGAKAATQTPPVRSGKRVIFTTLDDGTGLVDLAFF 1044


>gi|257425817|ref|ZP_05602241.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            55/2053]
 gi|257428483|ref|ZP_05604881.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            65-1322]
 gi|257431117|ref|ZP_05607494.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            68-397]
 gi|257433799|ref|ZP_05610157.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            E1410]
 gi|257436716|ref|ZP_05612760.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            M876]
 gi|282914498|ref|ZP_06322284.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus M899]
 gi|282924844|ref|ZP_06332510.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            C101]
 gi|293503576|ref|ZP_06667423.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            58-424]
 gi|293510591|ref|ZP_06669296.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            M809]
 gi|293537133|ref|ZP_06671813.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus M1015]
 gi|257271511|gb|EEV03657.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            55/2053]
 gi|257275324|gb|EEV06811.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            65-1322]
 gi|257278065|gb|EEV08713.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            68-397]
 gi|257281892|gb|EEV12029.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            E1410]
 gi|257284067|gb|EEV14190.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            M876]
 gi|282313210|gb|EFB43606.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            C101]
 gi|282321679|gb|EFB52004.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus M899]
 gi|290919978|gb|EFD97046.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus M1015]
 gi|291095242|gb|EFE25507.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            58-424]
 gi|291466482|gb|EFF09003.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            M809]
          Length = 1065

 Score =  529 bits (1362), Expect = e-147,   Method: Composition-based stats.
 Identities = 321/1022 (31%), Positives = 510/1022 (49%), Gaps = 81/1022 (7%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G 
Sbjct: 5    LNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIFGM 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + +    N   T             V+L     G + L +L S + +         +  
Sbjct: 65   TIYVTNGLNNIET-------------VVLAKDNYGLKDLYQLSSEIKMNALE----HVSF 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              L+      +I              F N +      +  F     +  Y+    HR   
Sbjct: 108  ELLKRFSNNMII-------------IFKNVADEHRDIVRVFDSH--EDTYL---DHRSV- 148

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +VQ      +  V   +  + +  D +    L A+  +T +           H+
Sbjct: 149  ------LVQ-----GIKHVWIQDVCYQTRHDADTISALAAIRDNTKLDLIHDQEDFGAHF 197

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            L             PE       IA++C+  L+ H  +LP++     +  +K     L  
Sbjct: 198  LTENEIHQLDV--NPEYFTQADRIAQKCNAELKYHQSLLPQYQTPNDESAKKYLWRVLVT 255

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            +                  +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ 
Sbjct: 256  Q------------LKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVM 303

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF    R++VI+Y
Sbjct: 304  VGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTHREKVIQY 363

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            VQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +      
Sbjct: 364  VQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQI 423

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            DD  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +      
Sbjct: 424  DD--FKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG-- 479

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612
             +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + LL
Sbjct: 480  LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELL 539

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+ 
Sbjct: 540  SQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQ 599

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ F
Sbjct: 600  YLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHF 659

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I G  +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  +
Sbjct: 660  IEGTKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANIL 719

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + + 
Sbjct: 720  SNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKV 779

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I+E    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +   
Sbjct: 780  IVEERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDG 839

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
               +E++       +F       + K   E       ++  + E+  LGFY S HP+D  
Sbjct: 840  DLNIEQD-----GFLFD----ILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD-- 888

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                         +         I +       +Q +T+ G  + +VT ++  +  +   
Sbjct: 889  -KKFVAKQYLTIFKLSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLDGVI 945

Query: 1032 FP 1033
            FP
Sbjct: 946  FP 947


>gi|49483944|ref|YP_041168.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            MRSA252]
 gi|282906098|ref|ZP_06313953.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            Btn1260]
 gi|282909013|ref|ZP_06316831.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            WW2703/97]
 gi|282911329|ref|ZP_06319131.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            WBG10049]
 gi|283958453|ref|ZP_06375904.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus A017934/97]
 gi|295428273|ref|ZP_06820902.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            EMRSA16]
 gi|60392207|sp|Q6GG04|DPO3A_STAAR RecName: Full=DNA polymerase III subunit alpha
 gi|49242073|emb|CAG40772.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            MRSA252]
 gi|282325024|gb|EFB55334.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            WBG10049]
 gi|282327277|gb|EFB57572.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            WW2703/97]
 gi|282331390|gb|EFB60904.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            Btn1260]
 gi|283790602|gb|EFC29419.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus A017934/97]
 gi|295127673|gb|EFG57310.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            EMRSA16]
 gi|312437840|gb|ADQ76911.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus TCH60]
 gi|315195607|gb|EFU25994.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            CGS00]
          Length = 1065

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 322/1022 (31%), Positives = 511/1022 (50%), Gaps = 81/1022 (7%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G 
Sbjct: 5    LNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIFGM 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + +    N   T             V+L     G + L +L S + +         +  
Sbjct: 65   TIYVTNGLNNIET-------------VVLAKDNYGLKDLYQLSSEIKMNALE----HVSF 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              L+      +I              F N +      +  F     +  Y+    HR   
Sbjct: 108  ELLKRFSNNMII-------------IFKNVADEHRDIVRVFDSH--EDTYL---DHRSV- 148

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +VQ      +  V   +  + +  D +    L A+  +T +           H+
Sbjct: 149  ------LVQ-----GIKHVWIQDVCYQTRHDADTISALAAIRDNTKLDLIHDQEDFGAHF 197

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            L             PE       IA++C+  L+ H  +LP++     +  +K     L  
Sbjct: 198  LTENEIHQLDV--NPEYFTQADRIAQKCNAELKYHQSLLPQYQTPNDESAKKYLWRVLVT 255

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            +                  +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ 
Sbjct: 256  Q------------LKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVM 303

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++VI+Y
Sbjct: 304  VGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVIQY 363

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            VQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +      
Sbjct: 364  VQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQI 423

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            DD  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +      
Sbjct: 424  DD--FKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG-- 479

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612
             +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + LL
Sbjct: 480  LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELL 539

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+ 
Sbjct: 540  SQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQ 599

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ F
Sbjct: 600  YLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHF 659

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I G  +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  +
Sbjct: 660  IEGTKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANIL 719

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + + 
Sbjct: 720  SNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKV 779

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I+E    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +   
Sbjct: 780  IVEERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDG 839

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
               +E++       +F       + K   E       ++  + E+  LGFY S HP+D  
Sbjct: 840  DLNIEQD-----GFLFD----ILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD-- 888

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                         +         I +       +Q +T+ G  + +VT ++  +  +   
Sbjct: 889  -KKFVAKQYLTIFKLSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLDGVI 945

Query: 1032 FP 1033
            FP
Sbjct: 946  FP 947


>gi|282919466|ref|ZP_06327201.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            C427]
 gi|282317276|gb|EFB47650.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            C427]
          Length = 1065

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 322/1022 (31%), Positives = 511/1022 (50%), Gaps = 81/1022 (7%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G 
Sbjct: 5    LNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIFGM 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + +    N   T             V+L     G + L +L S + +         +  
Sbjct: 65   TIYVTNGLNNIET-------------VVLAKDNYGLKDLYQLSSEIKMNALE----HVSF 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              L+      +I              F N +      +  F     +  Y+    HR   
Sbjct: 108  ELLKRFSNNMII-------------IFKNVADEHRDIVRVFDSH--EDTYL---DHRSV- 148

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +VQ      +  V   +  + +  D +    L A+  +T +           H+
Sbjct: 149  ------LVQ-----GIKHVWIQDVCYQTRHDADTISALAAIRDNTKLDLIHDQEDFGAHF 197

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            L             PE       IA++C+  L+ H  +LP++     +  +K     L  
Sbjct: 198  LTENEIHQLDV--NPEYFTQADRIAQKCNAELKYHQSLLPQYQTPNDESAKKYLWRVLVT 255

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            +                  +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ 
Sbjct: 256  Q------------LKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVM 303

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++VI+Y
Sbjct: 304  VGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVIQY 363

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            VQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +      
Sbjct: 364  VQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQI 423

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            DD  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +      
Sbjct: 424  DD--FKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG-- 479

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612
             +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + LL
Sbjct: 480  LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELL 539

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+ 
Sbjct: 540  SQGDTTGIFQLESDGVRSVLKKLKPEHYEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQ 599

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ F
Sbjct: 600  YLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHF 659

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I G  +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  +
Sbjct: 660  IEGTKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANIL 719

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + + 
Sbjct: 720  SNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKV 779

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I+E    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +   
Sbjct: 780  IVEERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDG 839

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
               +E++       +F       + K   E       ++  + E+  LGFY S HP+D  
Sbjct: 840  DLNIEQD-----GFLFD----ILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD-- 888

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                         +         I +       +Q +T+ G  + +VT ++  +  +   
Sbjct: 889  -KKFVAKQYLTIFKLSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLDGVI 945

Query: 1032 FP 1033
            FP
Sbjct: 946  FP 947


>gi|120611340|ref|YP_971018.1| DNA polymerase III subunit alpha [Acidovorax citrulli AAC00-1]
 gi|120589804|gb|ABM33244.1| DNA polymerase III, alpha subunit [Acidovorax citrulli AAC00-1]
          Length = 1076

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 249/1046 (23%), Positives = 432/1046 (41%), Gaps = 76/1046 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S   GA     ++++ A     A+A+TD  ++   +     A   G++
Sbjct: 20   PGYAELHCLSNFSFQRGASHPIELVERAAELGYAALALTDECSVAGVVRAHTAARRCGLK 79

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G +                        +V L     G+  L E +S    +   K  
Sbjct: 80   LIVGSEFACGDV-----------------RLVALARDETGWGNLCEFISDARRI-APKGE 121

Query: 129  VRICL-SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             R+   S    +   G  +L       +  A       +A  +     +  G   +V ++
Sbjct: 122  YRVHAGSDFARLR--GCEVLVAPRRDRL-SALEPRGVGLAVAQACAPLRAQGIHPWVAVE 178

Query: 188  RHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             H   D       + +     +LPLVA  +      +     DV+ AV     VS+    
Sbjct: 179  LHTAPDDAAWLEALERAGRALDLPLVAAGDVHMHVLQRKPLQDVVTAVRLGRPVSECGFA 238

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                          ++     P  L  T+E+A RC+F L       PR    +     + 
Sbjct: 239  LQAHGERRLRPRMRLAGI-YPPALLAATLEVAARCTFSLDEIRYRYPRENVPDGMTPGEA 297

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                      AG   R  QG         + R ++  EL +IA  ++  YFL V D ++ 
Sbjct: 298  LAAY----TEAGARERYPQGV------PPEVRAQIAKELELIAHCRYEMYFLTVHDIVRE 347

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I    GRGS A S   + L IT +DP +  LLFERF++ +R   PD D+DF  DR
Sbjct: 348  ARRRGIL-CQGRGSAANSAVCFCLGITAVDPTKTQLLFERFISKERDEPPDIDVDFEHDR 406

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG ER A      + + ++ALRDVG+AL +  + VD   K         
Sbjct: 407  REEVIQYIYRKYGRERAAIAAVVITYRTRSALRDVGKALGVAPAVVDAFAKDHHWFD-ED 465

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            ++ + + + +    A +A  +    LE++ +L G  RH S H  G V+ +  L++LVP+ 
Sbjct: 466  IAAERLQELAAGLGAPIAAHTAALWLELAHELRGFPRHLSQHVGGFVLTEGKLTRLVPVE 525

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                    + Q++   ++   L+K D L L  L+ L+++LD  A  RG   +L+ IP +D
Sbjct: 526  PASMDGRSIIQWDKDDLDDMHLMKVDVLALGMLSALRRALDLRAALRGQAWELADIPRED 585

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              TY ++    T+G+FQ+ES      L  ++P  + D++  V++ RPGPI   +V+   +
Sbjct: 586  PATYDMICAADTVGVFQIESRAQMSMLPRLKPRELYDLVVEVAIVRPGPIQGGMVHPYLQ 645

Query: 666  NGKEK-----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
              +        V  H  + P L+ T GV I+QEQVMQIA + + ++   AD LRR+M   
Sbjct: 646  ARERMARGDGFVLEHKKLGPALERTLGVPIFQEQVMQIAMIAADFTPGMADDLRRSMAAW 705

Query: 721  IKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
             +   + + ++  + G   NG S   A  I++ +  F +YGF +SHA ++A+++Y ++W 
Sbjct: 706  KRRGGVHRFEQALMEGMRNNGYSDDFAQRIYQQMLGFGEYGFPESHAYSFALLAYASSWF 765

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------- 832
            K H P  FLAA +  +        +   DAR+  ++++P        D  +         
Sbjct: 766  KRHEPACFLAALLNSQPMGFYTPSQLVHDARRHGLRVLPADAAHSDWDSTLEGPAVPLPG 825

Query: 833  -----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +   L  + G G   A  +M A A  PF  ++D   R    + + + L +   
Sbjct: 826  LQQAQPAVRLGLRLVAGYGPEAAARLMRARAASPFAGVQDLALRARQDRQDLQALAAADA 885

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
                      R Q +      ++    ++             E       + L +     
Sbjct: 886  L---RSLAGHRRQQMWDAAAQRRAPALLQ-------------EAPVHEAPLALPEAPE-- 927

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
                   +    G     HP+ + +  +    I+  +   A   G  +R   +V  +Q+ 
Sbjct: 928  -GEEIVFDYAATGLTLRRHPMALLRERMAGWRIQAAQALQAVPHGRRVRACGIVTVRQRP 986

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + KG+   +VT  +         +P
Sbjct: 987  GSAKGTM--FVTLEDETGTVNVIVWP 1010


>gi|257888619|ref|ZP_05668272.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,141,733]
 gi|257824673|gb|EEV51605.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,141,733]
          Length = 1103

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 318/1028 (30%), Positives = 508/1028 (49%), Gaps = 56/1028 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +      IQPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEEIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++                 ++       GYQ+L++L SR  + ++      
Sbjct: 63   IGLHLSYTYEE-------------KNYGLLAYAKDETGYQQLMKLSSRKMIQEK------ 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRH 189
            + L  + E  T+ L+ +   +   +  AF  N  +          + +F    Y+ L  +
Sbjct: 104  MALDDMIE--TDHLVFVVPATHS-VSEAF--NKEEHFFSHWQFLLENVFTKDFYIGLSEN 158

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                     +  Q       PL A +    L +ED  A +V+  +   + +  +      
Sbjct: 159  TPNQ---LPEWYQYVTKENYPLCALHPIASLQQEDLFALEVMKHIKEGSQMPLESLSAPL 215

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P       SE   I       L   V  A+R +  +        + +        K+   
Sbjct: 216  PSANGYLISEQEMIKRFEEAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPQGKQAGE 275

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR    + +E R+         + ++YR+RLD+EL+VI +M F  YFLIV D + +A +
Sbjct: 276  YLRELCYSQVEHRIVD-------YTKEYRERLDYELSVIHQMGFDDYFLIVWDVMAFAHR 328

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D   +RR+E
Sbjct: 329  NKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPDNRREE 388

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN     ++ 
Sbjct: 389  VLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLKITLTQ 448

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                   +  E   A      L + +  LEGL RH STHAAG+VI DR L +LVP+ R  
Sbjct: 449  A-YKTSRQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDRNLLELVPLQRGS 507

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
                    + M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  IP +D +T
Sbjct: 508  DEAFLTQ-YTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGQEIRLKEIPLNDAKT 566

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  RK GK
Sbjct: 567  LPLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNIDTFIARKKGK 626

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK K+ +D++
Sbjct: 627  EAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKDVLDEE 686

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K  F+SGA + G S+  AV ++E + KFA+YGFN+SHA AY+ + +Q A++K H+P  F 
Sbjct: 687  KSHFVSGALQQGYSEKTAVTVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHHPGAFF 746

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGT 847
             + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L AIKG+  
Sbjct: 747  TSLMNSVRHNTTKLKEYIAEARKNKLKLSSPSINQSNYSFELVNKEEIRFGLTAIKGIRR 806

Query: 848  TTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 ++     + PF S++ F  R+D + L   +L+SL   G  D    +R QL+  L+
Sbjct: 807  DFVEDVLNERKQNGPFKSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQLMLDLE 866

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
               +   +     +    ++           +  E+ +      R + E+  LG Y SGH
Sbjct: 867  GKIQNIVY-----SGGSLDLLGIM------ALKEEEVADYTLEERLKLEEEYLGVYLSGH 915

Query: 967  PLDVYKPILRKMGIKGYEESV-ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            P         ++ +    + +   +    + L  M+   ++ +T+KG  + +V  ++ + 
Sbjct: 916  P----AEGFDRLRLAKQVQLITDIVPNQPVNLLLMIKEVREIRTKKGELMAFVEGTDSSG 971

Query: 1026 EYEANFFP 1033
            E     FP
Sbjct: 972  EISVTVFP 979


>gi|87199556|ref|YP_496813.1| DNA polymerase III, alpha subunit [Novosphingobium aromaticivorans
            DSM 12444]
 gi|87135237|gb|ABD25979.1| error-prone DNA polymerase, DnaE-like protein [Novosphingobium
            aromaticivorans DSM 12444]
          Length = 1078

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 256/1052 (24%), Positives = 442/1052 (42%), Gaps = 87/1052 (8%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S  F  L   ++YS L GA     ++ +        + + D N +   +        
Sbjct: 1    MTGSQPFAELVSATNYSFLRGASHPAQMVARAHQLGMAGLGVADRNTVAGVVRAHVGWRE 60

Query: 65   AG-----IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
             G      +  +G +L                     P +V   ST  G++RL  L++  
Sbjct: 61   VGGLASGFRLAVGARLVFADG---------------TPDVVAYPSTLRGWRRLTRLLTLG 105

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
                Q K    + LS L +   + L++ TG                   + L   ++   
Sbjct: 106  NRRAQ-KGDCTLYLSDLLDHADDLLLIATGHD----------------RRVLEKLREARP 148

Query: 180  DRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS- 237
              +++ +  +  G D  R +Q   L     +PL+AT ++L+   +    HDVL  +    
Sbjct: 149  GAVWLAVTMQRGGTDARRLAQAQALGAACGVPLLATCDALYDHPDARPLHDVLTCIREGV 208

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            T+     R     + +LK  +EM  +F   PEA+  +VEI  R +F L       P    
Sbjct: 209  TIAEAGQRLLANAERHLKLPAEMARLFRSHPEAVTASVEILSRITFTLDDLRYEYPHEPV 268

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E      + +  L +    G E     G        ++Y+  L  E  +I +  ++ YF
Sbjct: 269  PEGW----QPQAWLEHLVQQGGEALFPDGL------PENYQAVLRQEFCLIRKKNYAYYF 318

Query: 358  LIVADFIQWAKKNNIPV-GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            L V D ++ A+  + P+   GRGS A S+  Y L IT IDP+R  LLF RFL+  R   P
Sbjct: 319  LTVHDIVRHARSLDPPILCQGRGSAANSLVCYFLGITPIDPVREQLLFSRFLSEMRDEPP 378

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  +RR+E+++Y+  +YG ER     T    + ++A+R+VG+ L +      RL 
Sbjct: 379  DIDVDFEHERREEIMQYIYARYGRERAGIAATVIHYRPRSAIREVGKVLGLTEDVTARLA 438

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
              I  +    V    +A+        +A+P V RL  +  +L    RH S H  G V+ +
Sbjct: 439  STIWGNWGKDVPEAYVAE----AGLDIANPVVARLKALVDQLLTFPRHLSQHVGGFVLTE 494

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
              L +LVP++     D    +++   I+  GL+K D L L  LT ++KS D L +  V  
Sbjct: 495  SRLDELVPIHNAAMPDRTFIEWDKDDIDALGLMKVDILALGMLTAIRKSFDLLRRHDVAD 554

Query: 597  -DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P DD  TY +L    ++G FQ+ES      L  M+PDC+ D++  V++ RPGPI
Sbjct: 555  LTLASVPHDDRATYAMLKRGDSIGTFQVESRAQIAMLPRMKPDCLYDLVIQVAIVRPGPI 614

Query: 656  DNIVVYNNRKN--------GKEKIVSIHP-LIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
               +V+   +                  P  +  +L +T GV ++QEQ M++A + + ++
Sbjct: 615  QGGMVHPYLRRRNGEEAAVFPSPAPPHDPHELHKVLGKTLGVPLFQEQAMKLAIVAARFT 674

Query: 707  LSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
             ++AD LRRAM        +   ++  I G    G  +  A   +E +  F +YGF +SH
Sbjct: 675  PAQADGLRRAMATFRHHGTVHNYEDLLIDGMVARGYEREFAERCYEQIKGFGEYGFPESH 734

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A A+  ++Y ++W+K H+P  F  A +  +        +  +DA+Q  +++    VN   
Sbjct: 735  AQAFGWLAYVSSWLKCHHPAAFTCALLNSQPMGFYAPAQLVRDAQQHGVEVRAVDVNASH 794

Query: 826  VDFKVGDNR-----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
             D  +   +     +    + I G     A  + +A  D  F S+ED   R +   +  +
Sbjct: 795  WDCTLAGGKGGPFALQLGFSRIDGFRRAWAEALAQARHDGMFTSIEDVARRAE---MPPQ 851

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             L  L  A A      SR   L  +           +        +FA        +   
Sbjct: 852  ALRKLADADAFGSLASSRRDALWDV-----------RRTPPTQLPLFAFANAPELGQEPD 900

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
             + S          + +       GHP+   +  L + G+    E+     G  +R+A +
Sbjct: 901  ARLSAMPLPEEVVADYQTTRLSLKGHPMQFLRDALARKGVLSCAEANTAADGRKVRVAGV 960

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V+++Q+    KG+ + ++T  +      A  +
Sbjct: 961  VLTRQRPG--KGNAV-FITIEDETGVVNALLW 989


>gi|297590764|ref|ZP_06949402.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus MN8]
 gi|297575650|gb|EFH94366.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus MN8]
          Length = 1065

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 322/1022 (31%), Positives = 511/1022 (50%), Gaps = 81/1022 (7%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G 
Sbjct: 5    LNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIFGM 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + +    N   T             V+L     G + L +L S + +         +  
Sbjct: 65   TIYVTNGLNNIET-------------VVLAKDNYGLKDLYQLSSEIKMNALE----HVSF 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              L+      +I              F N +      +  F     +  Y+    HR   
Sbjct: 108  ELLKRFSNNMII-------------IFKNVADEHRDIVRVFDSH--EDTYL---DHRSV- 148

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +VQ      +  V   +  + +  D +    L A+  +T +           H+
Sbjct: 149  ------LVQ-----GIKHVWIQDVCYQTRHDADTISALAAIRDNTKLDLIHDQEDFGAHF 197

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            L             PE       IA++C+  L+ H  +LP++     +  +K     L  
Sbjct: 198  LTENEIHQLDV--NPEYFTQADRIAQKCNAELKYHQSLLPQYQTPNDESAKKYLWRVLVT 255

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            +                  +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ 
Sbjct: 256  Q------------LKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVM 303

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++VI+Y
Sbjct: 304  VGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVIQY 363

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            VQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +      
Sbjct: 364  VQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQI 423

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            DD  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +      
Sbjct: 424  DD--FKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG-- 479

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612
             +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + LL
Sbjct: 480  LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELL 539

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+ 
Sbjct: 540  SQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQ 599

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ F
Sbjct: 600  YLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHF 659

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I G  +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  +
Sbjct: 660  IEGTKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANIL 719

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + + 
Sbjct: 720  SNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKV 779

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I+E    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +   
Sbjct: 780  IVEERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDG 839

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
               +E++       +F       + K   E       ++  + E+  LGFY S HP+D  
Sbjct: 840  DLNIEQD-----GFLFD----ILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD-- 888

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                         +         I +       +Q +T+ G  + +VT ++  +  +   
Sbjct: 889  -KKFVAKQYLTIFKLSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLDGVI 945

Query: 1032 FP 1033
            FP
Sbjct: 946  FP 947


>gi|282904273|ref|ZP_06312161.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus C160]
 gi|282595891|gb|EFC00855.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus C160]
          Length = 1065

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 321/1022 (31%), Positives = 509/1022 (49%), Gaps = 81/1022 (7%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G 
Sbjct: 5    LNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDTCIANNIKPIFGM 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + +    N   T             V+L     G + L +L S + +         +  
Sbjct: 65   TIYVTNGLNNIET-------------VVLAKDNYGLKDLYQLSSEIKMNALE----HVSF 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              L+      +I              F N +      +  F     +  Y+    HR   
Sbjct: 108  ELLKRFSNNMII-------------IFKNVADEHRDIVRVFDSH--EDTYL---DHRSV- 148

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +VQ      +  V   +  + +  D      L A+  +T +           H+
Sbjct: 149  ------LVQ-----GIKHVWIQDVCYQTRHDAGTISALAAIRDNTKLDLIHDQEDFGAHF 197

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            L             PE       IA++C+  L+ H  +LP++     +  +K     L  
Sbjct: 198  LTENEIHQLDV--NPEYFTQADRIAQKCNAELKYHQSLLPQYQTPNDESAKKYLWRVLVT 255

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            +                  +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ 
Sbjct: 256  Q------------LKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVM 303

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR++VI+Y
Sbjct: 304  VGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRREKVIQY 363

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            VQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +      
Sbjct: 364  VQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQI 423

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            DD  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +      
Sbjct: 424  DD--FKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG-- 479

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612
             +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IP DD + + LL
Sbjct: 480  LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPIDDQKVFELL 539

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+ 
Sbjct: 540  SQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQ 599

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ F
Sbjct: 600  YLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHF 659

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I G  +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  +
Sbjct: 660  IEGTKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANIL 719

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + + 
Sbjct: 720  SNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKV 779

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I+E    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +   
Sbjct: 780  IVEERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDG 839

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
               +E++       +F       + K   E       ++  + E+  LGFY S HP+D  
Sbjct: 840  DLNIEQD-----GFLFD----ILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD-- 888

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                         +         I +       +Q +T+ G  + +VT ++  +  +   
Sbjct: 889  -KKFVAKQYLTIFKLSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLDGVI 945

Query: 1032 FP 1033
            FP
Sbjct: 946  FP 947


>gi|237784951|ref|YP_002905656.1| DNA polymerase III subunit alpha [Corynebacterium kroppenstedtii DSM
            44385]
 gi|237757863|gb|ACR17113.1| DNA polymerase III, alpha subunit [Corynebacterium kroppenstedtii DSM
            44385]
          Length = 1039

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 287/1040 (27%), Positives = 460/1040 (44%), Gaps = 94/1040 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S+YS L GA S   ++D  A     A+A+ D + ++ A++F++ A  +GI  I
Sbjct: 21   FAELHACSAYSFLRGASSPAEMVDSAAELGLEALALVDRDGVYGAVQFAEAAADSGIATI 80

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +    +       K        + +L   AEGY+RL  ++S  ++    K  VR
Sbjct: 81   FGAELTLTPSVSSSQPASSKNERI----LTVLCRGAEGYRRLSRVISDAHMCTGEKNEVR 136

Query: 131  IC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               L  L   G +  I+L   S  P                L    + F  R+ V L R 
Sbjct: 137  YPSLDELARRGGDHWIILADYSWTP---------------YLDELVEHFP-RVVVELDRL 180

Query: 190  R-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                D  R  + ++ A    L  V ++ +     +         A+ +   V   +    
Sbjct: 181  LVPDDADRHEEQLEAAEQLGLAAVYSSAATAARPKSGRLAGAKTALRYRKDVEDAEPYTH 240

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                    RS      +D PE   NT+ +AR C+F L   AP LP +   E       E 
Sbjct: 241  PIG-GTYLRSGAEMFDADYPELTANTLAVARDCAFTLTTIAPELPDWPVPEG----YTEI 295

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L +       VR                 ++D ELNVI  + F GYFLIV D + + +
Sbjct: 296  TWLEHMVEKRGAVRYGSREDNHAA-----WAQIDHELNVIGGLNFPGYFLIVTDLVDFCR 350

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            + NI    GRGS A S   +AL IT++DP+   LLFERFL+P+R   PD D+D    RR+
Sbjct: 351  RANIL-AQGRGSSANSAVCFALGITNVDPVAADLLFERFLSPEREGPPDIDLDIESGRRE 409

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+Y  NKYG E  AQ+    + + + ALRD  RAL     ++D   + + + P   V+
Sbjct: 410  EVIQYCYNKYGRENAAQVANVITYRRRGALRDAARALGYSSGRIDAWVRGLDDVPNDVVT 469

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                                     ++ +L G  RH S H+ G+VI DRP++ +VP+   
Sbjct: 470  -------------------------LADQLRGQPRHLSIHSGGMVICDRPIADVVPVEWA 504

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607
               +  + Q++       GL+KFD LGL  L  +  ++D +   RG  V+L  +  DD E
Sbjct: 505  RMENRSIIQWDKDDAASGGLVKFDLLGLGMLEAIHHAIDQVRDHRGRTVNLWQLGLDDPE 564

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRK 665
             Y +L     +G+FQ+ES     AL  ++P    D++  V+L RPGPI   ++  Y  R+
Sbjct: 565  VYAMLARADAVGVFQVESRAQMSALPRLKPREFYDLVVQVALIRPGPIQGGSVHPYIRRR 624

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEE 724
            NG+E +   HP +   L +T GV ++QEQVM++A   +G++  EAD LRRAM  K+  ++
Sbjct: 625  NGEEAVTFDHPCLKDALAKTLGVPLFQEQVMRVAVDAAGFTPVEADALRRAMGAKRSAKK 684

Query: 725  MDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            M++  ERF  G  + +G+ +     +++ +  FA YGF +SHA ++A I Y +AW K +Y
Sbjct: 685  MEQLHERFARGCREKHGMDEATITTLWKKIIAFAAYGFPESHAQSFASIVYFSAWFKRYY 744

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD---------NR 834
            P EF  A +  +       +    DAR+  ++I+P  VN   V+    D         N 
Sbjct: 745  PAEFCVALLRAQPMGFYSPQSLIADARRHGVEILPIDVNHSDVEANAIDNPDLEPGAPNS 804

Query: 835  IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            +   L A+KG+G   A+ +++A AD  PF  + D   R     ++   +E+L  AGAL  
Sbjct: 805  LRLGLDAVKGLGARGAKAVVQARADGGPFTRIADLSRRA---GISVSQVEALATAGALRS 861

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
             G  R + L         A  +  +                  +I++      ++     
Sbjct: 862  MGIDRREGLW--------AAGIAAHERPGMLP--------GMSEISIPSLPGMSAFELAA 905

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             +    G     HP+++ +  L   GI    +  +      + +A  V  +Q+  T  G 
Sbjct: 906  ADIASTGITADIHPVELLRKHLDNAGIISIRQLASCEDSTRVTVAGTVTHRQRPGTAGG- 964

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
             + ++   +          P
Sbjct: 965  -VVFLGLEDETGLANITVSP 983


>gi|188584280|ref|YP_001927725.1| DNA polymerase III, alpha subunit [Methylobacterium populi BJ001]
 gi|179347778|gb|ACB83190.1| DNA polymerase III, alpha subunit [Methylobacterium populi BJ001]
          Length = 1070

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 270/1037 (26%), Positives = 438/1037 (42%), Gaps = 74/1037 (7%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
             LQV + +S L GA S   +    +    PA+ ITD  +L   +   Q A   G++ ++G
Sbjct: 5    ELQVTTHFSFLRGASSPEELFSAASLLGIPALGITDHGSLAGMVRAHQAAKVTGVRLVVG 64

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            C                +        +++  +    Y RL  L+S        K   R+ 
Sbjct: 65   C----------------RLDLDDFLPLLVYPTDRAAYGRLCRLLSLGKARGG-KGRCRLT 107

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRG 191
             + L+    EGL  +       +               L+  +K FG R    L  R R 
Sbjct: 108  WADLEAW-QEGLFAVL------LPEGREAALPSDLASHLVQLRKTFGVRASCALTRRFRP 160

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTP 250
             D  R   +   A    +  VAT + L+         DV+  +    T+           
Sbjct: 161  DDADRLDALAAAARAARVATVATGDILYHVAGRRRLQDVVTCIRLGLTIDRAGFAKERHA 220

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            D +LK   E   +F+  PEAL    EIA  C+F L   A   P    ++        +  
Sbjct: 221  DRFLKPPDETARLFARFPEALARAGEIAAACTFSLDDLAYTYPTEAREDG----LSPQER 276

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L     AG E R   G        +   ++L  EL++I R+ ++ YFL V   + +A + 
Sbjct: 277  LEALTWAGAERRYPAGV------PEAVTRQLRHELDLIGRLAYAPYFLTVESIVAFADRK 330

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I    GRGS A S   + L IT IDP+R +LLFERF++  R   PD D+DF  +RR+EV
Sbjct: 331  KIL-CQGRGSAANSAVCFCLRITSIDPIRQNLLFERFVSEARREPPDIDVDFEHERREEV 389

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+++   YG  R A        +++ ALR+VG+ + +P      L +L  +  +  V  +
Sbjct: 390  IQWIFETYGRHRSALTAIVSRFRSRGALREVGKVMGLPEDVTGALNRLTWSWSSEGVGER 449

Query: 491  AIAD---DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
             + +   +   R  RL          I+++L G  RH S H  G V+    L +LVP+  
Sbjct: 450  ELRELNLNPDDRRLRLTLE-------IARELIGTPRHLSQHPGGFVLTLDRLDELVPVEP 502

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
               +   V +++   I+    +K D LGL  L  L+++ D LA+ +    DL+ IP +D 
Sbjct: 503  AAMAHRQVIEWDKDDIDALKFMKVDVLGLGMLGCLRRAFDLLAEVKNQPRDLASIPQEDG 562

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
             TY ++    TLG+FQ+ES      L  M+P    D++  V++ RPGPI   +V+    R
Sbjct: 563  ATYAMIRRADTLGVFQIESRAQMAMLPRMKPRTFYDLVIEVAIVRPGPIQGDMVHPYIRR 622

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE- 723
            +  +E++    P +  +L++T GV ++QEQ MQ+A + +G+S  EAD LRR+M       
Sbjct: 623  REKREEVTYPTPELKAVLEKTLGVPLFQEQAMQVAMVGAGFSAMEADELRRSMATFKFTG 682

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             + + + R + G   NG ++  A   F+ L  F  YGF +SHAA++A+++Y ++WMK H+
Sbjct: 683  GVHRFQTRLVEGMIANGYARDFAERTFKQLEGFGSYGFPESHAASFALLAYASSWMKCHH 742

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-------NRIY 836
            P  F AA +  +        +  +DAR   + I P  VN    D  +           + 
Sbjct: 743  PDVFCAALLNAQPMGFYAPAQIVRDARAHGVVIRPLDVNYSEWDCTLESLGEGRELFAVR 802

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L    G+     RH+ +    +PF SL +   R     L    L  LV A A    G 
Sbjct: 803  LGLRLASGLPERDGRHLAKMRGGRPFASLPELADRA---GLPATALTCLVRADAFRSLGL 859

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R +           A W  K        +FA                  ++      + 
Sbjct: 860  NRRE-----------AAWAAKALRPDPLPLFATLSEPAQAAEPAVSLPAMSAGGEVVADY 908

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
               G     HPL   +  L ++G +          G +I +A +V+ +Q+  + KG+   
Sbjct: 909  CAKGLSLRAHPLAFLRGTLGRLGARPCAALDRVANGASIVVAGIVLMRQRPGSAKGTM-- 966

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++T  +          P
Sbjct: 967  FMTLEDETGIANLIVRP 983


>gi|114570381|ref|YP_757061.1| DNA polymerase III subunit alpha [Maricaulis maris MCS10]
 gi|114340843|gb|ABI66123.1| error-prone DNA polymerase, DnaE-like protein [Maricaulis maris
            MCS10]
          Length = 1093

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 266/1056 (25%), Positives = 445/1056 (42%), Gaps = 90/1056 (8%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + ++  +  L   S++S L GA   + ++    A    AI + D N+L   +   + A  
Sbjct: 1    MSET--YAELVAASNFSFLRGASHPDEMVLAAKALGLAAIGLCDRNSLAGVVRAHKAAKK 58

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            AG+   IG +L                       +         Y RL  L++       
Sbjct: 59   AGMTLCIGTRL----------------VTRCGFELATYPRDRAAYARLSRLLTLGKRRT- 101

Query: 125  GKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-R 181
             K    + L  + +   EG   I+L     GP             +     F     D  
Sbjct: 102  VKGKCDLGLEDVLD-HAEGQVFILLPPADPGP-----------DWQDTARHFCAAAPDGA 149

Query: 182  LYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
             ++ L QR  G D  R  ++   A    LPL+AT ++L+ + E     D L  +   T +
Sbjct: 150  CHLALAQRFDGQDGARVFRLTGFAGQTGLPLIATTDALYHTPERRALQDALTCIREKTTI 209

Query: 241  SQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                 R     + +LK  +EM  +F+    A    V      +  L+     +      E
Sbjct: 210  DTAGFRLEAHAERHLKPPAEMARLFA----AHPEAVANTMHLARRLRFSLDEIAYQYPDE 265

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              +  +     L   +      R   G              +++EL +I ++ ++ YFL 
Sbjct: 266  IMEPGETAMQTLTRLSREKAVWRYPDG------IPDKVAAAIEYELTLIRQLDYAPYFLT 319

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D ++ A+   I    GRGS A S   Y L IT +DP R  LLFERF++ +R   PD D
Sbjct: 320  VYDIVRHARSRGIL-CQGRGSAANSTICYCLGITSVDPARIDLLFERFVSAERNEPPDID 378

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  +RR+EVI+Y+  KYG  R     T  + ++K A+RD+G+A+ +    +D L + +
Sbjct: 379  VDFEHERREEVIQYIYGKYGRHRAGMTATVTTYRSKGAIRDIGKAMGLSPDLIDALARAV 438

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             +  +  V    I    R       +  +   + + ++L G  RH S H  G VI    L
Sbjct: 439  WHGSSAGVPEADI----RAMALDPDEQRLALAMRLVRELIGFPRHLSQHPGGFVITRDRL 494

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDL 598
              +VP+     +D  + +++   IE  GL+K D LGL  L+++ K+L  L +  G +  L
Sbjct: 495  DDIVPVMNAAMADRTMIEWDKDDIETLGLMKVDVLGLGMLSVIAKALALLREAYGRRESL 554

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +  +D   Y ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI   
Sbjct: 555  ASLQDEDPRVYDMICEADTVGVFQIESRAQMSMLPRLKPRQFYDLVIEVAIVRPGPIQGD 614

Query: 659  VVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V+    R+ G+E+I    P +  +L  T GV ++QEQ M+IA + +G++ +EAD LRRA
Sbjct: 615  MVHPYLRRREGRERIDYPSPELKAVLGRTLGVPLFQEQAMKIAVVAAGFTPAEADGLRRA 674

Query: 717  MGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M        + + + RF+ G  KNG +   A   F+ +  F +YGF +SHAA++A++ Y 
Sbjct: 675  MATFRHAGIIHEFRHRFLEGMIKNGYAPEFAERCFKQIEGFGEYGFPESHAASFALLVYV 734

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-- 833
            +AW+K HYP  F  A +  +        +  +DAR+  + I PP +N    D  +     
Sbjct: 735  SAWLKCHYPDVFCTAILNAQPMGFYAPAQLVRDAREHGVDIRPPDINHSAWDCTLEAGSE 794

Query: 834  ---------------RIYYSLAAIKGV-GTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
                            +   L  +KG+     AR ++   A   F  +E    R     L
Sbjct: 795  PGPDVRPNRKGAHQYAVRLGLRQVKGLADAAAARIVVARQAGGHFICVESLMRRA---AL 851

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            +RR L+ L  A A+   G  R         +   A             +FA  +G  +  
Sbjct: 852  SRRALDQLANADAMRSLGQDRRAASWQAAGLATSA-----------LPLFAAGEGAETAN 900

Query: 938  -ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
              T        +S +   + R LG    GHPL  ++  L + G+           G+ I 
Sbjct: 901  GETPPPLPDMPASEQVYRDYRSLGLSLKGHPLGFFRQALSERGLVEARALKTLPNGSQID 960

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            LA +V+ +Q+  +  G  I +VT  +         +
Sbjct: 961  LAGLVLIRQRPGSASG--IVFVTLEDETGVANLIVW 994


>gi|319892748|ref|YP_004149623.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
            HKU10-03]
 gi|317162444|gb|ADV05987.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
            HKU10-03]
          Length = 1063

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 338/1024 (33%), Positives = 522/1024 (50%), Gaps = 82/1024 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H++Y LL  ++++   + +       AIAITD N ++   +F       GI+P++
Sbjct: 3    AHLNIHTAYDLLNSSITIEGAVQRTIELGYSAIAITDLNVMYGVPQFYDACIQHGIKPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +  Q N+                V++    EG Q L +L S +  +++ K     
Sbjct: 63   GMTVYLTDQLNVLEA-------------VVIAKNNEGLQNLFKLSSDIK-VNRIKHVSIY 108

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L                  +      N  +   + +      F D           
Sbjct: 109  EKKDLFN-------------DTVVIFKQMTNQEKHWHEEMPDGVTCFTDH---------- 145

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                      Q A   ELP V    + +   ED  A  VL A+  +T V+  D      +
Sbjct: 146  ----------QSAEDCELPKVLMQAAYYEKAEDKNALKVLHAIRDNTKVNLVDSHETPTE 195

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            H     +   S F++   A   T EIA  C   L+ H  +LP F+  +          EL
Sbjct: 196  HIYDVDALYDSQFAEAWLA--RTDEIANMCDAKLEYHQALLPEFVTPDGSSANAYLWAEL 253

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                               G     YR+RL +E +VI +M ++ YFLIV+D I++AK N 
Sbjct: 254  ER------------ALADFGLTEARYRKRLKYEYDVITQMGYADYFLIVSDLIRYAKSNG 301

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDPL++ LLFERFLNP+R++MPD DIDF   +R++VI
Sbjct: 302  VMVGPGRGSSAGSLVSYLLNITTIDPLQYDLLFERFLNPERVTMPDIDIDFEDTQREKVI 361

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             YVQ KYG  RVA I+TFG L AKA  RDVGR +    + +    KLIP+     +    
Sbjct: 362  HYVQQKYGDYRVAGIVTFGHLLAKAVARDVGRVMGFDETTLSEASKLIPSKLGVTLDEAY 421

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + RF+     +   +R  E  +KLEGL R+ STHAAG+++ D+PL Q +P+      
Sbjct: 422  --KEERFKAFVHRNHRHERWFEYCKKLEGLPRNTSTHAAGVIVNDQPLYQSIPLTEGETG 479

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ LT++ + +  +A+   V +D+  IPFDD   + 
Sbjct: 480  --LLTQWTMTEAERIGLLKIDFLGLRNLTIIHQIIKQVARDLKVDIDVEQIPFDDVHVFE 537

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R+ L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++   +
Sbjct: 538  LLSRGDTTGIFQLESEGVRRVLQKLQPEHFEDIVAVTSLYRPGPMEEIPTYIRRRHDPSQ 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP + P+LK T GVIIYQEQ+MQIA   +G+S  EAD+LRRAM KK +E ++ +++
Sbjct: 598  VTYLHPDLAPILKRTYGVIIYQEQIMQIASQFAGFSYGEADILRRAMSKKNREVLENERQ 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI GA + G ++T++  IF+L+ KFADYGF ++HA +Y+ I+Y   ++K HYP  F A 
Sbjct: 658  HFIDGAKEKGYAETLSGQIFDLILKFADYGFPRAHAVSYSKIAYIMTYLKVHYPAYFYAN 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + N  K     Q+A+Q +I I  P +N     +      +Y SL AIKGVG  T 
Sbjct: 718  ILSNVIGNDTKTNMMIQEAKQQHITIHGPHINKSQWRYVATQEGVYISLGAIKGVGYQTV 777

Query: 851  RHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + IM E     P+    DFC+R+  +  +RR LE+L+  GA+DCFG +R  LLQS+D + 
Sbjct: 778  QTIMNERREQGPYKDFFDFCNRIPGRLRSRRTLEALILTGAMDCFGKNRATLLQSIDKVS 837

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                       +   ++ A      + K    +     S    + E++ LGFY + HP++
Sbjct: 838  DT-------DVSIDTDLLA---SVATIKQEYAETEEMPSQQLSDFEKQYLGFYVTAHPVE 887

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                  ++    G  +  A +    I +   + + +  +T++G ++ +V  ++     + 
Sbjct: 888  ---KAFKQKQYLGIFQLQAHVTHQPILV--TLDAVRVIRTKQGQQMAFVELNDGITTMDG 942

Query: 1030 NFFP 1033
              FP
Sbjct: 943  VIFP 946


>gi|21220233|ref|NP_626012.1| DNA polymerase III subunit alpha [Streptomyces coelicolor A3(2)]
 gi|5531449|emb|CAB50954.1| putative DNA polymerase III, alpha chain [Streptomyces coelicolor
            A3(2)]
          Length = 1185

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 265/1071 (24%), Positives = 439/1071 (40%), Gaps = 74/1071 (6%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL   S +S   GA     + ++       A+A+TD + L   + F++    AG++
Sbjct: 2    PGFTHLHTVSGFSARYGASHPERLAERAFERGMDALALTDRDTLAGTVRFAKACAKAGVR 61

Query: 69   PIIGCQL---------------DIDMQDNLKMTNQGKTPFPTVPSIVLLVST-AEGYQRL 112
            P+ G +L                +           G     + P +  L    A G+  L
Sbjct: 62   PLFGAELAVAAPESAAADRTETSVRRDRRRAPVRGGAFVDESAPRVTFLARDGARGWADL 121

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
              LVS  +  +    S  +          +GL +L G     + RA        A + L+
Sbjct: 122  CRLVSAAHTAE---GSPLLSWPD---NHADGLTVLLG-PDSDVGRALAAGRPDRAARLLV 174

Query: 173  TFKKLFGDRLYVNLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
             +++++GD L +    H             ++ V  A    +  V +N   +      E 
Sbjct: 175  PWREVYGDALRLEAVWHGRTGIGPGSLRLAARTVGFAAEQGVRPVLSNAVRYADPGQGEV 234

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
             DVL A      +                 +   +    +  A        R        
Sbjct: 235  ADVLDAARRLVPIGATKELDSGEAWLKDAGAMRHAAERIVESAGFRRDTAHRLLEQTRAT 294

Query: 288  HAPILPRFIEKECDDIQKEEENEL----RNKAVAGLEVRLAQGAIAKGYHA----QDYRQ 339
             A  L    +          E  L    R  A   L  R A G + +GY      ++Y +
Sbjct: 295  AAECLVDPEDDLGMGAVHFPEPHLVGAGRRTAQRALASRAAAGMVRRGYDRRRDHREYWE 354

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            R+  EL++IA   F+ YFL VA  +   +   I V   RGSGAGS+  + L I   DP+ 
Sbjct: 355  RMHHELDIIAHHGFASYFLTVAQVVDDVRHMGIRVA-ARGSGAGSLVNHLLGIAHADPVE 413

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              LL ERFL+ +R+ +PD DID    RR EV R +  ++G ERVA +    + + + A+R
Sbjct: 414  HGLLMERFLSKERVVLPDIDIDVESARRLEVYRAIIGRFGTERVATVAMPETYRVRHAIR 473

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL----ADPSVDRLLEIS 515
            DVG AL M  +++DR+ K  P+  A                A            RL E+ 
Sbjct: 474  DVGAALSMDPAEIDRVAKSFPHIRARDARAALEELPELKELAGESRRDGGGRYGRLWELV 533

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            + L+ L R  + H  G+++ D  L    P+       LP+ QF+   +E  GL+K D LG
Sbjct: 534  EGLDALPRGVAMHPCGVLLSDASLLSRTPVVPTSGEGLPMAQFDKDDVEDLGLLKLDVLG 593

Query: 576  LKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            ++  + +  ++  + +  G +VDL  +P  D  TY ++ +  TLG FQ+ES G R  +  
Sbjct: 594  VRMQSAMAHAVAEVKRATGTEVDLDAVPEGDPATYRMIRSAETLGCFQIESPGQRDLVGR 653

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            +QP    D++  +SL+RPGP+   +   +   ++G+  +   H  +   L  T GV+++ 
Sbjct: 654  LQPATFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRHPHEDLAEPLAGTYGVVVFH 713

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQ++ I  +++G    EAD +RR +     E   + K  F   A+ NG         +E+
Sbjct: 714  EQIIDIVAIMTGCGRGEADRVRRGLSD--PESQGRIKVWFAQHATANGYDAETIQRTWEI 771

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +    DAR+ 
Sbjct: 772  VEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARRR 830

Query: 813  NIQIMPPSVNTPCVDFKVG-----------DNRIYYSLAAIKGVGTTTARHIMEASADKP 861
             + I+P  VN   V  ++               +  +L+ + G+    A  I      +P
Sbjct: 831  GVPILPLDVNESGVAHRIELVSESGSRKPATWGLRLALSDVHGISEAEAERIA---TGQP 887

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + SL DF  R      +R +   L   GALD FG +R  L   L  + + A    +    
Sbjct: 888  YASLLDFWERARP---SRPLAGRLAQVGALDAFGANRRDLQLHLTELHRGA----RGGRG 940

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
                +    K   +            S  +   E  VL    S + +D ++  LR++G+ 
Sbjct: 941  DQLPLTGGRKTASAG------LPDLTSEEKLSAELGVLSMDASRNLMDDHRTFLRELGVV 994

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +       G  + +A    + Q    R G R+ + T  + +   +  FF
Sbjct: 995  SAKRLREARHGETVLVAGAKAATQTPPVRSGRRVIFSTLDDGSGLVDLAFF 1045


>gi|257885304|ref|ZP_05664957.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,501]
 gi|257821156|gb|EEV48290.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,501]
          Length = 1104

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 309/1029 (30%), Positives = 502/1029 (48%), Gaps = 57/1029 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++                 ++       GYQ+L++L SR  + +       
Sbjct: 63   IGLHLSYTYEE-------------KNYGLLAYAKDEIGYQQLMKLSSRKMIQE------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRH 189
                 L E+     +     ++  +  AF  N             + +F    Y+ L  +
Sbjct: 103  --KLDLAEMTETDHLAFVVPANHSVSEAF--NKEDNFFGHWQFLLENVFTRNFYIGLTEN 158

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                     +  Q        L A +    L +E+  A +V+  +   + +  ++     
Sbjct: 159  TPDQ---LPEWYQYVIKENYSLCALHPIASLQQEELFALEVMKHIKDGSQIPLENLSASL 215

Query: 250  PDHYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P            +     +A L   V  A+R +  +        + +        K+  
Sbjct: 216  PLTANGYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNGKQAG 275

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR    + +E R+         + ++Y++RLD+EL+VI +M F  YFLIV D + +A 
Sbjct: 276  EYLRELCYSQVERRITD-------YTKEYQERLDYELSVIHQMGFDDYFLIVWDVMAFAH 328

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D   +RR+
Sbjct: 329  RNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPDNRRE 388

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN     ++
Sbjct: 389  EVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLKITLT 448

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                    +  E   A      L + +  LEGL RH STHAAG+VI D+ L +LVP+ R 
Sbjct: 449  QA-YKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLLELVPLQRG 507

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
                     + M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  +P +D +
Sbjct: 508  SDEAFLTQ-YTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLKEMPLNDAK 566

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  RK G
Sbjct: 567  TLLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNIDTFIARKKG 626

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK K+ +D+
Sbjct: 627  KEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKDVLDE 686

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +K  F+SGA + G S+  A  ++E + KFA+YGFN+SHA AY+ + +Q A++K H+P  F
Sbjct: 687  EKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHHPGAF 746

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVG 846
              + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L AIKG+ 
Sbjct: 747  FTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFGLTAIKGIR 806

Query: 847  TTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I+     + PF S++ F  R+D + L   +L+SL   G  D    +R QL+  L
Sbjct: 807  RDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQLMLDL 866

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +   +   +     +    ++           +  E+ +      R + E+  LG Y SG
Sbjct: 867  EGKIQNIVY-----SGGSLDLLGIM------ALKEEEVADYTLEERLKLEEEYLGIYLSG 915

Query: 966  HPLDVYKPILRKMGIKGYEESV-ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            HP         ++ +    + +   +    + L  M+   ++ +T+KG  + +V  ++ +
Sbjct: 916  HP----AEGFDRLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMAFVEGTDSS 971

Query: 1025 KEYEANFFP 1033
             E     FP
Sbjct: 972  GEISVTVFP 980


>gi|168700398|ref|ZP_02732675.1| DNA polymerase III alpha subunit [Gemmata obscuriglobus UQM 2246]
          Length = 1617

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 281/773 (36%), Positives = 433/773 (56%), Gaps = 34/773 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +H+ YSLL+G   +  ++ +       A+AITD  NL+ A+EF  +    GI+PI
Sbjct: 5   FCHLHLHTHYSLLDGFNRIQPLVKQTKELGMNAVAITDHGNLYGAIEFYMECKKGGIKPI 64

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG +  +     L   ++G+  F T   + LL     G++ LI+L S  YL +   ++ R
Sbjct: 65  IGYEAYLAPGSRLDRDSKGELGFST--HLTLLAQNETGFKNLIKLSSSAYL-EGFYRNPR 121

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I    L E   +GLI L+G  +G  ++    +  Q AEK    F+K+FG+  ++ +Q + 
Sbjct: 122 IDRQIL-EAHKDGLICLSGCLAGEFNQYIIKDKPQEAEKTAKWFRKVFGENYFIEIQNNG 180

Query: 191 -GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK----DR 245
            G           +A    +PLVAT ++ +L  ED +AHD+L  +    +   +      
Sbjct: 181 IGLQDQCTPVAADIANRLGVPLVATADAHYLCAEDAQAHDILFCINTRQMHDPRKKKYPE 240

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R+   +++++  +M  +F +  +A+  + EIA + +  L       P F   E     +
Sbjct: 241 ERMPNPYFVRSPEDMYRLFPNYQDAVARSQEIADKVNIDLDFKKRHFPVFTTPEG----R 296

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E  LR     G+E R        G  ++  R+RLD EL +IARM FS YFLIV DF++
Sbjct: 297 TPEQYLRELCERGMEERYE------GKASEAVRKRLDHELGIIARMGFSSYFLIVWDFVR 350

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A++  IP    RGSG G++  Y L ++ + P+ + LLFERFL+P+R   PD DIDFCQD
Sbjct: 351 FAREEGIP-CTARGSGCGAIVCYLLYMSHVCPIEYDLLFERFLDPNRSEAPDIDIDFCQD 409

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+ VI YV+ KYG E VAQI TFG+L AKAAL+DVGR L     +++ LCKL+P   A 
Sbjct: 410 RRELVIDYVKKKYGEESVAQIGTFGTLAAKAALKDVGRVLGQTPDRMNALCKLVPMKGAI 469

Query: 486 PVS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             S  +A+ +   F+     DPS+ ++++I+ KLEG  R+   HAAG+VI + P++  VP
Sbjct: 470 SKSLQEALDESPDFKREYDQDPSIKQVVDIALKLEGANRNVGKHAAGVVIANGPVTNYVP 529

Query: 545 MYRDVRSD----------LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
           + R  +               TQ+ M  +EK GL+K DFLGL+ LT+L   +  + + RG
Sbjct: 530 VQRPPKKGGSDEGSDDTTTMTTQWEMGILEKVGLLKMDFLGLRNLTVLDNCVKLIKKTRG 589

Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
           + V+ +  P  D  TY LL      G+FQLES G+R+ L+ M+PD I D+IA+++LYRPG
Sbjct: 590 ITVEPTKFPLTDEATYQLLQRGDAKGVFQLESEGIRELLKRMKPDNIRDLIAVLALYRPG 649

Query: 654 PIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
           P++  +V  Y   KN +++    HP+++ +L ET  V++YQEQ+M+I   L G  L++A 
Sbjct: 650 PLEGGMVDEYVECKNKRKQPFYPHPVMEEVLSETFAVMVYQEQIMRILNKLGGIELAKAY 709

Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
              +A+ KK  E ++ +K  F++GA + G+    A  IFEL+ KF  YGFNK 
Sbjct: 710 ACIKAISKKNFEIINARKVDFVTGAKERGLEAEKADEIFELIVKFGGYGFNKC 762



 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 83/282 (29%), Positives = 121/282 (42%), Gaps = 15/282 (5%)

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC---QDARQFNIQIMPPS 820
            SH AAYA I YQTA++KTHY  E++AA ++ E+D+  K   F     DAR+  + ++PP 
Sbjct: 1208 SHTAAYAQIGYQTAYLKTHYTAEYMAALLSSEIDDGNKRDVFIDHISDARRLGVDVLPPD 1267

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNR 879
            VN    DF V +NRI + L AIKGVG   A  I+ A      F  L DFC RVD + + +
Sbjct: 1268 VNRGMADFDVLNNRIIFGLTAIKGVGRGAALEIVRARNEGGKFKDLFDFCERVDRRIIAK 1327

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
              +E ++ AGA D FG  R     ++      A      +      +F   +       T
Sbjct: 1328 AAVEGMIQAGAFDVFGK-RSAQFAAVAKAYAVADQRAAEKRKGQTGLFDDVEEAADAGPT 1386

Query: 940  ---LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-ATIRGNNI 995
               L        + R + E+  LGFY S HPL  +   LR+               G   
Sbjct: 1387 NQGLTDVPEWPETERLKFEKEALGFYISSHPLAQHDEQLRRFRTHDCGVLAKGGKNGTEA 1446

Query: 996  RLAAMVVSKQQKKTRK-----GSRIGWVTFSEPAKEYEANFF 1032
            R+A M+ +   + T       G +       +         +
Sbjct: 1447 RIAGMITNLDVR-TANKGRNIGRKYAMFRIEDFTGSVRCIMW 1487


>gi|254385261|ref|ZP_05000592.1| DNA polymerase III alpha subunit [Streptomyces sp. Mg1]
 gi|194344137|gb|EDX25103.1| DNA polymerase III alpha subunit [Streptomyces sp. Mg1]
          Length = 1170

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 248/1068 (23%), Positives = 439/1068 (41%), Gaps = 70/1068 (6%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
             +      VHL V S YS   GA    +++ +        +A+TD + +  A+ F++ A 
Sbjct: 19   GMSNG---VHLHVASGYSARYGASHPRDLVRRATERGIGTLALTDRDTVTGAVRFAKAAT 75

Query: 64   AAGIQPIIGCQLDIDMQD--NLKMTNQGKTPFPTVPSIV-------LLVSTAEGYQRLIE 114
            AAGI+P+ G  + +          T + +TP      +V       LL  +  G+ RL  
Sbjct: 76   AAGIRPVFGVDVAVAPHTPARPGSTIRPRTPVRGGAHVVEPPLRVTLLARSTAGWARLCR 135

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  +  D       +    L     E L++L G       RA       +AE  +  +
Sbjct: 136  LVSDAH-ADAAGALPVVSWETLGRYADEDLVVLLGPV-SEPARALSAGRPDLAEHLIAPW 193

Query: 175  KKLFGDRLYVN-----LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            +++ G  L +      +           ++ + LA    +  V TN   +     +   D
Sbjct: 194  REMAGANLRLETVCWGVPGTGPGSLRLAARTIGLADQLGVRAVLTNAVRYADPAQHRIAD 253

Query: 230  VLMAVA------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR---- 279
            VL A           +   +   +              +  +D   A     E  R    
Sbjct: 254  VLDAGRLLRPIDRRRLDCGERWLKDPAAMQAAAERIAEASGADSGRAAALLAETVRAGEE 313

Query: 280  ---RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
                    L +  P  P       +         LR +   G+  R            + 
Sbjct: 314  CVLDPVADLGLGTPRFPEPEVVGAEPGPGGAMRLLRQRCETGMFARGLD-------RDRR 366

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
              ++L++EL VI ++++  YFL VA  +   +   I V   RGSGAGS+  +AL +   +
Sbjct: 367  AVEQLEYELGVIGKLEYEAYFLAVAQVVADVRAMGIRVA-ARGSGAGSMVNHALFVATAN 425

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            PL   LLFERFL+  R S+PD D+D    RR EV   +  ++G +RVA      + +A+ 
Sbjct: 426  PLDHDLLFERFLSERRSSLPDIDVDVESARRLEVYDRIIERFGTDRVAVTGMPETYRARH 485

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            ALRD G AL +    VDR+ K  P+  A  +   A+      ++      S   L E+++
Sbjct: 486  ALRDTGLALGIAPQVVDRIAKSFPHIRACDI-RDALTTLPELKQLAAEAGSFGPLWELAE 544

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             L+ L R  + H  G+++ +  L   +P+        P+ Q + + +E  GL+K D LG+
Sbjct: 545  GLDKLPRGIAMHPCGVILSNASLLDRLPVQPTPGGQYPMVQADKEDVEDLGLLKLDVLGV 604

Query: 577  KTLTLLQKSLDFLAQRGVKV----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            +  + +  ++  + +   +     +   +P  D   + L+    T+G+FQLES G +  +
Sbjct: 605  RMQSAMAHAVKEVRRTSGRQIDLDNPDHVPLGDPGAFDLIRKSDTIGMFQLESPGQQDLV 664

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR-KNGKEKIVSIHPLIDPMLKETQGVIIY 691
              +QP  ++D+IA +SL+RPGP+   +                HP + P+L  T GV I+
Sbjct: 665  GRLQPRDVQDVIADISLFRPGPVKGGMPALYIAARHGAAPQYPHPDLVPVLSSTYGVTIW 724

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
             EQ++ +  +L+G   + A+V RRA+    +    + +  F   A   G S+ +   ++E
Sbjct: 725  HEQIIDMFAVLTGCDRALAEVARRALANGERLP--QVEAWFKGEAGGRGYSRAVLDEVWE 782

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
            ++  F  YGF ++HA A+AV + Q+AW+K H+P    A  +  +       +    DAR+
Sbjct: 783  IIKGFGAYGFCRAHALAFAVPALQSAWLKAHHPAALYAGLLEHDPGM-WPPRVIVSDARR 841

Query: 812  FNIQIMPPSVNTPCVDFKVGD-----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
             ++ ++   +N    D+++         +  S++++KG+       I    + +P++SL+
Sbjct: 842  HDVPVLNVDINRSAADYRIEQTEGGVWGVRLSMSSVKGISEDQVARIT---SGQPYNSLQ 898

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            DF  R         + E L+  GALD      +R  LL     +  +         +   
Sbjct: 899  DFWQRARPAL---PIAERLIQIGALDPLRGPLTRRDLLLQAAELHAH---TRARPADGQL 952

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
             +     G               S      E  VL    S H +  +  +LR++G     
Sbjct: 953  PL-----GGELVTAEPSGLPEMTSREALSAEIDVLKIDVSRHLMTHHHRLLREIGATDAA 1007

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               A   G  + +A +  S Q      G R+ +VT  + +   +  FF
Sbjct: 1008 HLKAMYPGQRVLVAGVRASTQTPPIPSGKRVIFVTLEDGSGLVDIAFF 1055


>gi|294011130|ref|YP_003544590.1| DNA polymerase III alpha subunit [Sphingobium japonicum UT26S]
 gi|292674460|dbj|BAI95978.1| DNA polymerase III alpha subunit [Sphingobium japonicum UT26S]
          Length = 1189

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 250/1106 (22%), Positives = 436/1106 (39%), Gaps = 113/1106 (10%)

Query: 4    YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-- 61
             L K+P F  L   +++S L GA    +++ +  A     + I D N++   +       
Sbjct: 39   GLPKAPPFAELVAATNFSFLRGASHPQDMVARAIALGLEGLGIADRNSVAGVVRAHVARK 98

Query: 62   ------------ACAAGIQPIIGCQLDIDMQ-----DNLKMTNQGKTPFPTVPSIVLLVS 104
                        A     QP+   +L  + +     D   +           P IV   +
Sbjct: 99   RWPERMRAALLEARKEAGQPL---ELSEEEERACRTDLRLVVGARLVFVDGTPDIVAYPA 155

Query: 105  TAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGG-------------- 150
            T  G+  L +L++   L    K    +    L     + L+++  G              
Sbjct: 156  TRRGWGELTKLLTLGNLRS-VKGDCILRYEDLTAYLDDLLLIVMPGSTATQQTAHRKPVD 214

Query: 151  ---SSGPIDRAFFFNS--------SQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRES 198
                  P   A                 E  L+    L   R+++    R  G D  R +
Sbjct: 215  YEHDDRPSQEAIRQGHLSLVPPPAPSDLEALLVRLSHLAPRRVWLAAALRRDGRDARRLA 274

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNR 257
            Q   L+    +PL+AT ++L+ S       DVL  +   T +++  R      + ++ + 
Sbjct: 275  QFKGLSAITGVPLLATMDALYASPAQRPLQDVLGCIREGTTIARAGRLLEANAERHVHDP 334

Query: 258  SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
            +E+  +F D PEA+  + +   R  F L   +   P     E        +  L      
Sbjct: 335  AEIAHLFRDCPEAVAESGDFLSRVHFTLDQLSYEYPHEPVPEGW----TAQQWLEELTW- 389

Query: 318  GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
                  A             RQ L  E ++IA+  ++ YFL V D + +A+   I    G
Sbjct: 390  -----SAAHVRYGARLPLKVRQTLQEEFSLIAKRNYAYYFLTVHDIVAFARTKGIL-CQG 443

Query: 378  RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
            RGS A S+  + L +T IDP R  LLF RF++ DR   PD D+DF  +RR+EV++Y+  +
Sbjct: 444  RGSAANSMVCFLLGVTSIDPFRHDLLFSRFVSEDRNEPPDIDVDFEHERREEVMQYIYER 503

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            YG  R     T    ++++A+R+V + L +      RL   +    +  ++   I +   
Sbjct: 504  YGRHRAGIAATVIHYRSRSAVREVAKVLGLGEDVSARLSSTVWGSYSSDMNDVRIVE--- 560

Query: 498  FREARLADPSVDRLLEISQK--LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
                 L +P + +L  +  +   E   RH S H  G V+    L + VP++     D   
Sbjct: 561  -AGFALDNPQIAQLKAVVDQLLSEPFPRHLSQHVGGFVLTQNRLDETVPLHHAAMEDRSF 619

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF--DDHETYHLLT 613
             +++   I+  GL+K D L L  L+ ++++ D + ++G+      +     D   Y +L 
Sbjct: 620  IEWDKDDIDALGLMKVDVLALGMLSCIRRAFDLMREQGLGDHQLTVDMEAQDEAVYDMLC 679

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKI 671
               ++G+FQ+ES      L  ++P  I D+   V++ RPGPI+  +V+    R+ G EK+
Sbjct: 680  KGDSIGVFQVESRAQINMLPRLKPRSIYDLTVQVAIVRPGPIEGNMVHPYLRRRCGDEKV 739

Query: 672  VSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
                P         +  +L ET GV ++QEQ M++A   +G+  +EAD LRRAM      
Sbjct: 740  EYPRPSPHHGPADELQKLLGETYGVPLFQEQAMKLAITAAGFEPAEADALRRAMATFRNV 799

Query: 724  -EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              +   +E+ I G  + G     A   F+ +  F  YGF +SHA ++A + Y +AW+K H
Sbjct: 800  GTIHHFREKMIRGMVERGYEAEFAERCFKQIEGFGSYGFPESHALSFARLVYVSAWIKCH 859

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD---------- 832
             P  F  A +  +        +  +DAR+  + +    VN    D  +            
Sbjct: 860  QPAVFACALLNSQPMGFYAPAQIVRDAREHGVTVHDVDVNMSGWDNALEPLLRSRDGGRG 919

Query: 833  ------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                    +   L  ++G     A+ ++ A  +  F ++ED   R     L  R L  L 
Sbjct: 920  EGEGRALALRLGLRQVEGFREDWAKRLVAARKEGLFSTMEDLARRA---GLPARALRLLA 976

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             A A    G  R   L              +   +    +FA  K     +         
Sbjct: 977  DADACRSLGKDRRTALW-----------EARRTPSDELPLFAAAKARELGEEPDAMLPAM 1025

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
              S   E +  V      GHP+   +P+    G+    +  A   G  ++ A +V+ +Q+
Sbjct: 1026 ALSEHVEADYLVTRLSLKGHPMQFLRPVFAAEGVLSCAQISAARNGTLVKTAGVVLVRQR 1085

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
                KG+ + ++T  +         +
Sbjct: 1086 PG--KGNAV-FITIEDETGITNILLW 1108


>gi|323464219|gb|ADX76372.1| DNA polymerase III subunit alpha [Staphylococcus pseudintermedius
            ED99]
          Length = 1063

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 338/1024 (33%), Positives = 522/1024 (50%), Gaps = 82/1024 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL +H++Y LL  ++++   + +       AIAITD N ++   +F       GI+P++
Sbjct: 3    AHLNIHTAYDLLNSSITIEGAVQRTIELGYSAIAITDLNVMYGVPQFYDACIQHGIKPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + +  Q N+                V++    EG Q L +L S +  +++ K     
Sbjct: 63   GMTVYLTDQLNVLEA-------------VVIAKNNEGLQNLFKLSSDIK-VNRIKHVSIY 108

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L                  +      N  +   + +      F D           
Sbjct: 109  EKKDLFN-------------DTVVIFKQMTNQEKHWHEEMPDGVTCFTDH---------- 145

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                      Q A   ELP V    + +   ED  A  VL A+  +T V+  D      +
Sbjct: 146  ----------QSAEDCELPKVLMQAAYYEKTEDKNALKVLHAIRDNTKVNLVDSHETPTE 195

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            H     +   S F++   A   T EIA  C   L+ H  +LP F+  +          EL
Sbjct: 196  HIYDVDALYDSQFAEAWLA--RTDEIANMCDAKLEYHQALLPEFVTPDGSSANAYLWAEL 253

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                               G     YR+RL +E +VI +M ++ YFLIV+D I++AK N 
Sbjct: 254  ER------------ALADFGLTEARYRKRLKYEYDVITQMGYADYFLIVSDLIRYAKSNG 301

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDPL++ LLFERFLNP+R++MPD DIDF   +R++VI
Sbjct: 302  VMVGPGRGSSAGSLVSYLLNITTIDPLQYDLLFERFLNPERVTMPDIDIDFEDTQREKVI 361

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             YVQ KYG  RVA I+TFG L AKA  RDVGR +    + +    KLIP+     +    
Sbjct: 362  HYVQQKYGDYRVAGIVTFGHLLAKAVARDVGRVMGFDETTLSEASKLIPSKLGVTLDEAY 421

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + RF+     +   +R  E  +KLEGL R+ STHAAG+++ D+PL Q +P+      
Sbjct: 422  --KEERFKAFVHRNHRHERWFEYCKKLEGLPRNTSTHAAGVIVNDQPLYQSIPLTEGETG 479

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ LT++ + +  + +   V +D+  IPFDD   + 
Sbjct: 480  --LLTQWTMTEAERIGLLKIDFLGLRNLTIIHQIIKQVTRDLKVDIDVEQIPFDDVHVFE 537

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R+ L+ +QP+  EDI+A+ SLYRPGP++ I  Y  R++   +
Sbjct: 538  LLSRGDTTGIFQLESEGVRRVLQKLQPEHFEDIVAVTSLYRPGPMEEIPTYIRRRHDPSQ 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP + P+LK T GVIIYQEQ+MQIA   +G+S  EAD+LRRAM KK +E ++ +++
Sbjct: 598  VTYLHPDLAPILKRTYGVIIYQEQIMQIASQFAGFSYGEADILRRAMSKKNREVLENERQ 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI GA + G ++T++  IF+L+ KFADYGF ++HA +Y+ I+Y   ++K HYP  F A 
Sbjct: 658  HFIDGAKEKGYAETLSGQIFDLILKFADYGFPRAHAVSYSKIAYIMTYLKVHYPAYFYAN 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + N  K     Q+A+Q +I I  P +N     +      +Y SL AIKGVG  T 
Sbjct: 718  ILSNVIGNDMKTNMMIQEAKQQHITIHGPHINKSQWRYVATQEGVYISLGAIKGVGYQTV 777

Query: 851  RHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + IM E     P+    DFC+R+ S+  +RR LE+L+  GA+DCFG +R  LLQS+D + 
Sbjct: 778  QTIMNERREQGPYKDFFDFCNRIPSRLRSRRTLEALILTGAMDCFGKNRATLLQSIDKVS 837

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                       +   ++ A      + K    +     S    + E++ LGFY + HP++
Sbjct: 838  DT-------DVSIDTDLLA---SVATIKQEYAETEEMPSQQLSDFEKQYLGFYVTAHPVE 887

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                  ++    G  +  A +    I +   + + +  +T++G ++ +V  ++     + 
Sbjct: 888  ---KAFKQKQYLGIFQLQAHVTHQPILV--TLDAVRVIRTKQGQQMAFVELNDGITTMDG 942

Query: 1030 NFFP 1033
              FP
Sbjct: 943  VIFP 946


>gi|330962397|gb|EGH62657.1| error-prone DNA polymerase [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 925

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 261/987 (26%), Positives = 434/987 (43%), Gaps = 78/987 (7%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           S  +  L   S++S   GA S   + ++       A+AITD   L   +   Q +   G+
Sbjct: 2   STEYAELHCLSNFSFQRGASSALELFERALRHGYTALAITDECTLAGIVRALQASRKTGL 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
             I+G ++ I+                  P IVLLV    GY+ L +L++      + K 
Sbjct: 62  PLIVGSEMYIENG----------------PKIVLLVEDKTGYEALCKLITVARRRAK-KG 104

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             R+      E  + GL+ +                +Q    +    ++ F DRL++ ++
Sbjct: 105 EYRLLREDF-ERSSSGLLAIWLPD--------IEGDAQACRSQGNWLREHFTDRLWLGVE 155

Query: 188 RHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQKDR 245
            HRG  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V      
Sbjct: 156 LHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEAGHL 215

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                + +L+    +   + D   A   +V IARRC+F  +      P  +  +     +
Sbjct: 216 LFANGERHLRPLDALAEHYPDWLLA--ESVRIARRCTFDFEQLKYEYPHELVPKG----Q 269

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + LR     G+  R  +G  A        R +++ EL +I   KF  YFL V D ++
Sbjct: 270 TATSWLRELTERGIRRRWPKGLSAAA------RAQVEKELALITEKKFDSYFLTVHDIVE 323

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+  +I    GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  D
Sbjct: 324 FARSQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERNEPPDIDVDFEHD 382

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L +        
Sbjct: 383 RREEVIQYIFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPSDQINTLAEAFSRWSDS 442

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             S + + +           P + R+L ++ +L G  RH S H  G VI + PL  LVP+
Sbjct: 443 LPSPERLREY----GFDADTPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLDTLVPV 498

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604
                ++  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +  D
Sbjct: 499 ENAAMAERTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKRWTLADMSGD 558

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662
           D ETY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V+   
Sbjct: 559 DPETYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYL 618

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            R+N +E I    P +  + + T GV ++QEQVM++A + + Y+  EAD LRRAM    +
Sbjct: 619 RRRNKEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEADELRRAMAAWKR 677

Query: 723 EEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               D  +ER  +G  KNG     A  IFE +  F  YGF +SHAA++A+++Y + W+K 
Sbjct: 678 HGGLDPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKC 737

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------D 832
           H P  F  A +           +  QDAR+ +I+I P  V     D  +          +
Sbjct: 738 HEPAAFTCALINSWPMGFYNPDQLLQDARRHHIEIRPVDVRYSHWDCTLEPVDHPDSTRN 797

Query: 833 NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I   L  ++      A  I  A + +PF    D   R +   L+ R  E+L  +GAL 
Sbjct: 798 LAIRLGLRMLRSFREDDALRIEAARSKRPFADATDLTIRAE---LDSRAAEALADSGALR 854

Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                R +    +  +                 +F       +         +       
Sbjct: 855 GLIGHRHRARWEVAGV------------EAQRPLFDDLPSEETQ----VTLPLPTVGEDL 898

Query: 953 ENEQRVLGFYFSGHPLDVYKPILRKMG 979
             +   LG     HPL + +  L    
Sbjct: 899 MADYATLGTTLGPHPLALLRRQLAAKR 925


>gi|259506675|ref|ZP_05749577.1| error-prone DNA polymerase [Corynebacterium efficiens YS-314]
 gi|259165759|gb|EEW50313.1| error-prone DNA polymerase [Corynebacterium efficiens YS-314]
          Length = 1052

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 269/1033 (26%), Positives = 438/1033 (42%), Gaps = 99/1033 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L   SSY+ L GA     ++D+       A+A+ D + L+ A+ F++ A   G+  +
Sbjct: 56   FVELHATSSYNFLAGASDPGEMVDRAHELGLSALALVDRDGLYGAVRFAEAAAEVGLATV 115

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +                     + +L    EGY+RL  L++   +    K SV 
Sbjct: 116  FGAELSLREGV-----------------LTVLCRGVEGYRRLSHLITGAAMSAGEKGSVD 158

Query: 131  IC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL-Q 187
               L  + E G    ++L G                  +K++    + FG D + +    
Sbjct: 159  YPLLPQVAEQGAGHWVVLAG---------------VEWQKKIDHLIECFGRDNVVLEFPA 203

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R    D      +  +     L  + +      + +         A+A    +++ +   
Sbjct: 204  RMLPEDTDHHDILRSIQTRTGLRGILSTMPTAATRDHVRLAGAKCALALRANLAEAESSL 263

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  +L++   +   +    + L  TVEIA  C+F   + AP LPR+   +       
Sbjct: 264  HPMGGTWLRSGGALARAYPQCGDLLATTVEIASGCAFTFDLVAPELPRWDTPDG----HT 319

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E   L +   +  + R            +  R ++  EL VI ++ F GYFLIV D +Q+
Sbjct: 320  EMTWLTHLVESRFDRRYR---SRPAEVRERARAQIRHELGVIEQLGFPGYFLIVDDLVQF 376

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
                 I    GRGS A S   + L IT+ +P+   LLFERFL+ DR   PD DID    R
Sbjct: 377  CHNATIL-CQGRGSAANSAVCFVLGITNAEPITAGLLFERFLSRDRDGPPDIDIDIESGR 435

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+YV  +YG +  AQ+    + + K ALRD  RAL  P   VD   +     PA  
Sbjct: 436  REEVIQYVYTRYGRDNAAQVANVITYRTKGALRDAARALGYPQGTVDAWSRGASEPPA-- 493

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                                    ++E++ +L+G  RH   H+ G+VI DRP++ +VP  
Sbjct: 494  -----------------------DVVELAGQLKGQPRHLGIHSGGMVICDRPIADVVPTE 530

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                    V Q++      AGL+KFD LGL  L  L   +D +   RG+ V+L  +   D
Sbjct: 531  WARMEGRSVVQWDKDDCAAAGLVKFDLLGLGMLEALHHMMDLVAHHRGITVNLWELDLAD 590

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNN 663
               Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y  
Sbjct: 591  AGVYDMLCRADAVGVFQVESRAQMSTLPRLKPRTFFDLVVEVALIRPGPIQGGSVHPYLR 650

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM--GKKI 721
            R++G+E +   HP+++  L +T G+ ++QEQ+MQIA   +G++  EAD LRRAM   +  
Sbjct: 651  RRSGEEAVTYDHPVLEKSLGKTLGIPLFQEQIMQIAVDAAGFTGGEADALRRAMGSKRSP 710

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
                  +   +   A  +GI    A  ++  +  FA YGF +SH+ ++A + Y +AW K 
Sbjct: 711  TRMAALRSRFYQGLADTHGIIGDTADKLWNKMVAFAAYGFPESHSQSFATLVYFSAWFKH 770

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP EF A  +  +       +    DAR+  ++I+P S+N   V     D  +   L  
Sbjct: 771  HYPAEFCAGLLRAQPMGFYSPQSLIADARRHGVEILPISINESGVQADAPDGHLRLGLDL 830

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            +KG+G   AR I E     P+ S+ D   R D   L    +E+L  AGALDC G  R + 
Sbjct: 831  VKGLGEEAARRIAE---HAPYTSIPDLSRRAD---LGVAHIEALARAGALDCLGVGRREA 884

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L                 T +   +           I        ++           G 
Sbjct: 885  LWQAGIA----------ATERPGMLPGIS------AIEAPALPGMSAFELMATSIAATGV 928

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESV-ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
                 P+ + +  L  +G+   +  +     G  +R+A +V  +Q+ +T  G  + ++  
Sbjct: 929  THDAQPMALLRAHLDALGVVPADRLLTDVADGTRVRIAGVVTHRQRPQTASG--VTFLGL 986

Query: 1021 SEPAKEYEANFFP 1033
             +          P
Sbjct: 987  EDETGLMNVMVSP 999


>gi|25027188|ref|NP_737242.1| error-prone DNA polymerase [Corynebacterium efficiens YS-314]
 gi|71151823|sp|Q8FRX6|DNAE2_COREF RecName: Full=Error-prone DNA polymerase
 gi|23492469|dbj|BAC17442.1| putative DNA polymerase III alpha subunit [Corynebacterium efficiens
            YS-314]
          Length = 1073

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 269/1033 (26%), Positives = 438/1033 (42%), Gaps = 99/1033 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L   SSY+ L GA     ++D+       A+A+ D + L+ A+ F++ A   G+  +
Sbjct: 77   FVELHATSSYNFLAGASDPGEMVDRAHELGLSALALVDRDGLYGAVRFAEAAAEVGLATV 136

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +                     + +L    EGY+RL  L++   +    K SV 
Sbjct: 137  FGAELSLREGV-----------------LTVLCRGVEGYRRLSHLITGAAMSAGEKGSVD 179

Query: 131  IC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL-Q 187
               L  + E G    ++L G                  +K++    + FG D + +    
Sbjct: 180  YPLLPQVAEQGAGHWVVLAG---------------VEWQKKIDHLIECFGRDNVVLEFPA 224

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R    D      +  +     L  + +      + +         A+A    +++ +   
Sbjct: 225  RMLPEDTDHHDILRSIQTRTGLRGILSTMPTAATRDHVRLAGAKCALALRANLAEAESSL 284

Query: 248  VTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  +L++   +   +    + L  TVEIA  C+F   + AP LPR+   +       
Sbjct: 285  HPMGGTWLRSGGALARAYPQCGDLLATTVEIASGCAFTFDLVAPELPRWDTPDG----HT 340

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E   L +   +  + R            +  R ++  EL VI ++ F GYFLIV D +Q+
Sbjct: 341  EMTWLTHLVESRFDRRYR---SRPAEVRERARAQIRHELGVIEQLGFPGYFLIVDDLVQF 397

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
                 I    GRGS A S   + L IT+ +P+   LLFERFL+ DR   PD DID    R
Sbjct: 398  CHNATIL-CQGRGSAANSAVCFVLGITNAEPITAGLLFERFLSRDRDGPPDIDIDIESGR 456

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+YV  +YG +  AQ+    + + K ALRD  RAL  P   VD   +     PA  
Sbjct: 457  REEVIQYVYTRYGRDNAAQVANVITYRTKGALRDAARALGYPQGTVDAWSRGASEPPA-- 514

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                                    ++E++ +L+G  RH   H+ G+VI DRP++ +VP  
Sbjct: 515  -----------------------DVVELAGQLKGQPRHLGIHSGGMVICDRPIADVVPTE 551

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                    V Q++      AGL+KFD LGL  L  L   +D +   RG+ V+L  +   D
Sbjct: 552  WARMEGRSVVQWDKDDCAAAGLVKFDLLGLGMLEALHHMMDLVAHHRGITVNLWELDLAD 611

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNN 663
               Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y  
Sbjct: 612  AGVYDMLCRADAVGVFQVESRAQMSTLPRLKPRTFFDLVVEVALIRPGPIQGGSVHPYLR 671

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM--GKKI 721
            R++G+E +   HP+++  L +T G+ ++QEQ+MQIA   +G++  EAD LRRAM   +  
Sbjct: 672  RRSGEEAVTYDHPVLEKSLGKTLGIPLFQEQIMQIAVDAAGFTGGEADALRRAMGSKRSP 731

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
                  +   +   A  +GI    A  ++  +  FA YGF +SH+ ++A + Y +AW K 
Sbjct: 732  TRMAALRSRFYQGLADTHGIIGDTADKLWNKMVAFAAYGFPESHSQSFATLVYFSAWFKH 791

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP EF A  +  +       +    DAR+  ++I+P S+N   V     D  +   L  
Sbjct: 792  HYPAEFCAGLLRAQPMGFYSPQSLIADARRHGVEILPISINESGVQADAPDGHLRLGLDL 851

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            +KG+G   AR I E     P+ S+ D   R D   L    +E+L  AGALDC G  R + 
Sbjct: 852  VKGLGEEAARRIAE---HAPYTSIPDLSRRAD---LGVAHIEALARAGALDCLGVGRREA 905

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L                 T +   +           I        ++           G 
Sbjct: 906  LWQAGIA----------ATERPGMLPGIS------AIEAPALPGMSAFELMATSIAATGV 949

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESV-ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
                 P+ + +  L  +G+   +  +     G  +R+A +V  +Q+ +T  G  + ++  
Sbjct: 950  THDAQPMALLRAHLDALGVVPADRLLTDVADGTRVRIAGVVTHRQRPQTASG--VTFLGL 1007

Query: 1021 SEPAKEYEANFFP 1033
             +          P
Sbjct: 1008 EDETGLMNVMVSP 1020


>gi|240142402|ref|YP_002966912.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1]
 gi|240012346|gb|ACS43571.1| DNA polymerase III, alpha subunit [Methylobacterium extorquens AM1]
          Length = 1316

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 384/1093 (35%), Positives = 580/1093 (53%), Gaps = 89/1093 (8%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGA---LSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            +   P FVHL V S +S   G      +  ++ + AA  QPA+A+TD  N+F   +FS  
Sbjct: 1    MTDRP-FVHLNVLSDFSFSHGTRGVSGVKELVARAAALGQPALALTDDMNMFGVYKFSSA 59

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM-Y 120
            A   G+QPI+G ++ +                       LL S+  GY  L  L+    +
Sbjct: 60   AAEKGVQPIVGTKIWVRAGATNVFGTMQ-----------LLASSETGYVNLCRLLKVALF 108

Query: 121  LLDQGKQSVRICLS------WLQEIGTEGLIMLTGGSSGPIDRAF--FFNSSQVAEKRLL 172
               +G+ S     S       L    ++ ++ L+GG  G + R +     ++Q A   L 
Sbjct: 109  PDAEGRISAHKDRSYVQLGHLLNAEYSQDVVCLSGGKDGFMSRVWDAARQNAQGAADWLS 168

Query: 173  T------FKKLFGDRLYVNLQRHR---GYDRYRESQVVQLAYTHELPLVATNNSLFLSEE 223
                      +FGDR +  + R+      D  RE+ ++  A     P+VAT   L+ +EE
Sbjct: 169  WVEDPGGLAAVFGDRFFFEICRNGVETDEDFAREAWLLDTAARQGRPVVATTQVLYAAEE 228

Query: 224  DYEAHDVLMAVAHS-----TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
             ++A ++L AVA       TV     R RV   +++++ +EM  +F+DLP A +N +E+A
Sbjct: 229  RHDALEILSAVARKENGSITVGPGTLRARVEARYHMRSDAEMRELFADLPTAYDNALEVA 288

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
            R  +           +      D   + E  EL ++A  GLE R  +   +     Q+YR
Sbjct: 289  RCTA-----FKVAKRKPRLPRFDAAGRSEREELVHQARTGLEERFGELGTS-EEARQEYR 342

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             RL+FEL VI +M F GYFLIV+DFI+WA  +++PVGPGRGSGAGS+ AYAL IT++DPL
Sbjct: 343  DRLEFELGVIGKMGFDGYFLIVSDFIKWALAHDVPVGPGRGSGAGSLVAYALRITNLDPL 402

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
            RF LLFERFLNPDR+SMPDFDIDFC   R  V++YV+ +YG + V+QI +FG +++K A+
Sbjct: 403  RFGLLFERFLNPDRVSMPDFDIDFCIQGRASVVQYVRERYGSDLVSQIASFGEIKSKTAI 462

Query: 459  RDVGRALQM------PYSQVDRLCKLIPNDPAHPVSLQAIADD-SRFREARLADPSVDRL 511
            +D GR L         YS+ D + KL+P    +P +L+   D+    R+   A      L
Sbjct: 463  KDAGRVLTHERDGSYGYSETDGMTKLVPMVQGNPYTLKRAYDEIPDLRQFVDASEKTRVL 522

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
             + ++K+EGL R    HAAGI+IGD PL +L+P+  +    +P+ QF++K  E  GL+KF
Sbjct: 523  FDNARKIEGLLRQRGVHAAGILIGDVPLEELLPVTWNATDGMPLAQFDLKGAEDVGLVKF 582

Query: 572  DFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            DFLGL+TL++L+ +  ++   RGV +D   IP DD   Y +     T  IFQ ES GM++
Sbjct: 583  DFLGLETLSVLKLARQYVKDSRGVDLDFDKIPLDDAGVYEIFARGMTNAIFQFESGGMKR 642

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP--LIDPMLKETQGV 688
            AL  M+P  IED+IA  +LYRPGP++ I VYN+ KNG+++     P     P+L+ET G+
Sbjct: 643  ALREMKPTRIEDLIAANALYRPGPMEMIPVYNDCKNGRQEPDYPEPREKTKPILEETFGI 702

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++YQEQVM +A+ ++G +L +AD+LRRAMGKKIK EMD QK  F+ GA ++G S   A  
Sbjct: 703  MVYQEQVMAVARAVAGLTLGQADLLRRAMGKKIKAEMDAQKAGFVKGALEHGTSARTAEE 762

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE--MDNVEKIKKFC 806
            +F+ +AKFA+YGFNKSH+AAYA+I+Y T W+K HYP EF AA ++ E   +NV ++    
Sbjct: 763  LFDKIAKFAEYGFNKSHSAAYALIAYHTGWLKKHYPQEFYAAVLSFEAAKNNVHEMSLVK 822

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVG----DNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
            +D   F I ++PP VN     F          I + L  IKG+       + E  A+ PF
Sbjct: 823  EDLDAFGIPLLPPDVNRSTGQFAPERTEQGGAIRFGLVGIKGLSGGIDAMVAEREANGPF 882

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCF--------GYSRMQLLQSLDNIQKYAQW 914
             ++ DF  R  +   NR  +E+L   GA              +R +   ++         
Sbjct: 883  RTVADFGRRT-AGLFNRSQIENLAAVGAFVGLPIVAGGPPETNRAKA--AIAAQFFANGA 939

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
              + ++     +FA E+ T  +++  E  S        + E R +GFYF  HPL + +P 
Sbjct: 940  KREAKSTDQFGLFAAEE-TAREELPEEMHSTAEWPDIPDREFRAVGFYFDQHPLKMLRPR 998

Query: 975  LRKMGI----------KGYEESVATIRGNNIR--LAAMVVSKQQKKTRKGSRIGWVTFS- 1021
            + K  +              E +   R +  R  + AM+ + ++  T +G R   +    
Sbjct: 999  MAKADLENEDVRVGTRGSVYEIMTARRESETRAVVVAMIENVRKTTTERGPR---LDVEA 1055

Query: 1022 -EPAKEYEANFFP 1033
             +    Y    +P
Sbjct: 1056 SDTTGNYRFYVYP 1068


>gi|289550541|ref|YP_003471445.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
            HKU09-01]
 gi|289180073|gb|ADC87318.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
            HKU09-01]
          Length = 1064

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 330/1024 (32%), Positives = 522/1024 (50%), Gaps = 81/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL +H+SY LL  +L + +++ K +     A+AITDTN L+   +F     +A I+PI 
Sbjct: 3    VHLNIHTSYDLLNSSLKIEDVVAKASKQGYTALAITDTNVLYGYPKFYDACVSANIKPIF 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + I    +                 VL     EG   + +L S + + D+      +
Sbjct: 63   GMTVYITDGLSSVEA-------------VLYALNNEGLTAMYQLSSAIKMKDKS----LV 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               W+ +  +   I+                  +  E++     + F +  ++ +     
Sbjct: 106  PFEWITKYQSNIAIV-----------------FKQVEQKHGHILEKFLNDEFIYVNSDSK 148

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D               LP V    + +L++ D +    L A+  +  +   +      +
Sbjct: 149  ND-------------FGLPRVWLRTARYLNDNDADTIAALQAIKLNEKLDLVNEMDNLNE 195

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            H+L+         S    A   T  +A +C+  +Q H  +LP+F   +        +  L
Sbjct: 196  HFLEASELDELTVSQEEWA--QTQALAEKCNAEIQYHQSLLPQFKTPD----NSSSKAYL 249

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
              + V  L+              ++Y  RL+ E  +I  M F  YFLIV+D I +AK ++
Sbjct: 250  WKQLVQRLKTLQLNQ--------KNYIDRLNHEFKIITNMGFEDYFLIVSDLIHYAKTHD 301

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDP++++LLFERFLNP+R++MPD DIDF   RR+ VI
Sbjct: 302  VMVGPGRGSSAGSLVSYLLGITTIDPIKYNLLFERFLNPERVTMPDIDIDFEDTRRERVI 361

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             YVQ KYG   V+ I+TFG L A+A  RDVGR +      +  + KLIP+     ++   
Sbjct: 362  EYVQQKYGEYHVSGIVTFGHLLARAVARDVGRIMGFDEITLAEISKLIPHQLGITLNQAY 421

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
              D+ +F++    +   ++  E+ +KLEGL RH STHAAGI+I D+PL   VP+      
Sbjct: 422  --DNDKFKDFVHRNYRHEKWFELCKKLEGLPRHTSTHAAGIIINDQPLFNFVPLTIGDTG 479

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + +  +     V++D+  IPFDD + + 
Sbjct: 480  --LLTQWTMTEAERLGLLKIDFLGLRNLSIIHQIVTQVKYDLNVEIDIEAIPFDDPKVFA 537

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R  L+ ++P   EDI+A+ SLYRPGP++ I  Y  R++   K
Sbjct: 538  LLSQGETTGIFQLESEGVRHVLQRLKPQHFEDIVAVTSLYRPGPMEEIPTYITRRHEPSK 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP ++P+LK T GVIIYQEQ+MQIA   +G+S  EAD+LRRAM KK +  ++ +++
Sbjct: 598  VAYLHPDLEPILKSTYGVIIYQEQIMQIASRFAGFSYGEADILRRAMSKKNRAVLENERQ 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A 
Sbjct: 658  HFVEGAQRNGYEEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFYAN 717

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + N +K     ++A+   I I+PP +N     +K     IY SL AIKGVG  + 
Sbjct: 718  ILSNVVGNEQKTAAIIEEAKIQGIAILPPHINHSHWFYKATPQGIYLSLGAIKGVGYQSV 777

Query: 851  RHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I+    +   F S +DF  R+  +   R++LESL+  GA D  G++R   LQ +D   
Sbjct: 778  KTIVNNRKEQGNFKSFKDFSKRIPKRIKTRKLLESLILVGAFDSLGHNRATSLQMIDEAV 837

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 V         +IF     T  D+I  E+    N       E+  LGFY S HP++
Sbjct: 838  DDITHVG-------LDIFDIAGMTPKDEI--EEREELNDLQLSTYEKEYLGFYISQHPVE 888

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                  + +GI              I +       +Q +T+KG ++ +V  ++  K  + 
Sbjct: 889  KMFHRKQFLGIYT---LANAANHQPILV--QFDQIKQIRTKKGQQMAFVVVNDGIKVIDG 943

Query: 1030 NFFP 1033
              FP
Sbjct: 944  VIFP 947


>gi|259046884|ref|ZP_05737285.1| DNA polymerase III, alpha subunit [Granulicatella adiacens ATCC
            49175]
 gi|259036507|gb|EEW37762.1| DNA polymerase III, alpha subunit [Granulicatella adiacens ATCC
            49175]
          Length = 1117

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 320/1034 (30%), Positives = 511/1034 (49%), Gaps = 56/1034 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQV SSYSLL+  + LN  +          +A+TD   L  A+EF ++    GIQPI
Sbjct: 3    YTTLQVFSSYSLLKSTIRLNEYVATGKLLGYKQLALTDDGVLHGAVEFYERCIQNGIQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +GC  +I  + +                +V+    ++GY+ L++L +   L  QG    +
Sbjct: 63   LGCTFEIAWKSDASKKEM----------LVVYAKGSKGYESLLKLST---LYQQGLTWTK 109

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                W+    +E + ++   +      A      +   K +    +  G  + + + R  
Sbjct: 110  EMTEWIA-THSEDVKIVLPPTDSEWVAANSKGRLEAVLKAVKE--EYAGVEIAIGITR-E 165

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              +R    ++ +      +  VA + S +L+  DY    VL A+     +S         
Sbjct: 166  MVERSEFEKMREGIEAAGVLPVAFSVSRYLNATDYFPWKVLQAIRLGGTLSFTQEDATGS 225

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVE-IARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            +   +  S            L + +E   +     + +   +LP+F   +     K    
Sbjct: 226  ESLPEATSMAKVFQVVEGGVLLSNLEKFTKDLVVEIPLRDTMLPKFPVPDG----KTSAQ 281

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L     A          +  G     Y  RL  EL VI  M F  YFLIV D ++ A++
Sbjct: 282  FLYELCEA--------AMLEMGVTTPIYVNRLKEELAVIHEMGFDDYFLIVWDIMRHARE 333

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I  G GRGS AGS+ AY L IT +DP+R+ LLFERFLN +R +MPD D+DF  D+R++
Sbjct: 334  KGIQTGAGRGSAAGSLVAYLLHITGVDPIRYHLLFERFLNRERYTMPDIDLDFPDDKRED 393

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            ++ Y+ +KYG++ VAQI+TFG+L AK  LRDV +        V +    I          
Sbjct: 394  ILAYIVSKYGNQNVAQIVTFGTLGAKQVLRDVCKVFGENIITVQKFSNNIAQ--GKVTLE 451

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            Q   ++  FRE   +     +L ++++ LEGL RH+S HAAG+V+    L++ VP+ +  
Sbjct: 452  QTYKENKAFREHIESSERNRKLYQVAKALEGLPRHSSVHAAGVVLSQDALTKTVPLMKRD 511

Query: 550  RS--------DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSL 600
            +         D  +TQ+ M+ +EK GL+K D LGL  LTLL K++    +    ++D++ 
Sbjct: 512  KGYSASLQEADWMLTQYAMQAVEKVGLLKMDLLGLSNLTLLHKAIQQTQKITKKELDITK 571

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            IP DD  T+ L     T GIFQ ES G+R+ L+ M+P   ED++A++SLYRPGP++ I  
Sbjct: 572  IPLDDPRTFELFQKAQTNGIFQFESDGIRRVLKEMKPTEFEDLVAVLSLYRPGPMEQISH 631

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            + NRK G E +   H  +  +L+ T G+++YQEQVMQ A  ++G+SL EAD+LRRA+GKK
Sbjct: 632  FINRKKGTEIVQYPHASLQRILEPTYGILVYQEQVMQAASEMAGFSLGEADILRRAIGKK 691

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              E +  QKE+F+ GA   G  +  A  +++ + KFA+YGFNKSHA AYA++SYQ A++K
Sbjct: 692  NSETIAAQKEKFVQGAVSKGYKQEDAETVYDYIEKFANYGFNKSHAVAYAMLSYQLAYLK 751

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP  F  A          K++ +  +ARQ  I+I+PPS+N    DF   D+ +   L 
Sbjct: 752  ANYPTAFFTALFQNASAKSSKLQDYLVEARQLGIKILPPSINNSFADFVANDSGVIVGLN 811

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            +IKG+       I++      PF   +DF  R+ ++     +L +L+ AGA D FG +R 
Sbjct: 812  SIKGIRRDFVESIVKNRYEYGPFKGFQDFAYRMGAQYTKEPLLVALINAGAFDEFGETRA 871

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
             L  ++D + K  ++   N      ++          ++       E    R   E  VL
Sbjct: 872  TLKANVDAVAKSVKFHGLN-----LSLEDDL------EVAFTHVEEEPLLQRIGEEIEVL 920

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            GF  S HP   Y P+++   I+      +      +R   ++V  ++  TRKG ++ +VT
Sbjct: 921  GFSISPHPSSKYDPLMKSGWIQAI---QSVFEEGYMRFVGLIVDIRKISTRKGEKMAYVT 977

Query: 1020 FSEPAKEYEANFFP 1033
              + +   +   FP
Sbjct: 978  LQDASGMIDVVVFP 991


>gi|57650573|ref|YP_186586.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus COL]
 gi|87161888|ref|YP_494343.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus USA300_FPR3757]
 gi|151221809|ref|YP_001332631.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus str. Newman]
 gi|161509916|ref|YP_001575575.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus USA300_TCH1516]
 gi|221142338|ref|ZP_03566831.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus str. JKD6009]
 gi|258450902|ref|ZP_05698955.1| DNA polymerase III subunit alpha [Staphylococcus aureus A5948]
 gi|262049018|ref|ZP_06021896.1| DNA polymerase III, alpha chain [Staphylococcus aureus D30]
 gi|262051793|ref|ZP_06024010.1| DNA polymerase III, alpha chain [Staphylococcus aureus 930918-3]
 gi|282924393|ref|ZP_06332066.1| DNA polymerase III subunit alpha [Staphylococcus aureus A9765]
 gi|284024750|ref|ZP_06379148.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus 132]
 gi|294849863|ref|ZP_06790602.1| DNA polymerase III subunit alpha [Staphylococcus aureus A9754]
 gi|304380705|ref|ZP_07363376.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus ATCC BAA-39]
 gi|81859569|sp|Q5HF71|DPO3A_STAAC RecName: Full=DNA polymerase III subunit alpha
 gi|57284759|gb|AAW36853.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus COL]
 gi|87127862|gb|ABD22376.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus USA300_FPR3757]
 gi|150374609|dbj|BAF67869.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus str. Newman]
 gi|160368725|gb|ABX29696.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus USA300_TCH1516]
 gi|257861438|gb|EEV84246.1| DNA polymerase III subunit alpha [Staphylococcus aureus A5948]
 gi|259160287|gb|EEW45314.1| DNA polymerase III, alpha chain [Staphylococcus aureus 930918-3]
 gi|259162835|gb|EEW47399.1| DNA polymerase III, alpha chain [Staphylococcus aureus D30]
 gi|269941182|emb|CBI49570.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            TW20]
 gi|282592894|gb|EFB97897.1| DNA polymerase III subunit alpha [Staphylococcus aureus A9765]
 gi|294823202|gb|EFG39632.1| DNA polymerase III subunit alpha [Staphylococcus aureus A9754]
 gi|302751529|gb|ADL65706.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus str. JKD6008]
 gi|304340812|gb|EFM06741.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus ATCC BAA-39]
 gi|315197169|gb|EFU27508.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus CGS01]
 gi|320141645|gb|EFW33480.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus MRSA131]
 gi|320143799|gb|EFW35572.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus MRSA177]
 gi|329314376|gb|AEB88789.1| DNA polymerase III subunit alpha [Staphylococcus aureus subsp. aureus
            T0131]
          Length = 1065

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 319/1022 (31%), Positives = 513/1022 (50%), Gaps = 81/1022 (7%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G 
Sbjct: 5    LNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFGM 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + +    N   T             V+L    +G + L +L S + +         +  
Sbjct: 65   TIYVTNGLNTVET-------------VVLAKNNDGLKDLYQLSSEIKMNALE----HVSF 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              L+      +I+               +  +   +   T    + D L +++Q      
Sbjct: 108  ELLKRFSNNMIIIF----------KKVGDQHRDIVQVFETHNDTYMDHLSISIQ------ 151

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                              V   N  + + +D +    L A+  +T +           H+
Sbjct: 152  --------------GRKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGAHF 197

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            L    + ++      E L     IA++C   L+ H  +LP++     +  +K     L  
Sbjct: 198  LT--EKEINQLDINQEYLTQVDVIAQKCDAELKYHQSLLPQYETPNDESAKKYLWRVLVT 255

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            +                  +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ 
Sbjct: 256  Q------------LKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVM 303

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ VI+Y
Sbjct: 304  VGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQY 363

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            VQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +      
Sbjct: 364  VQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQI 423

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            DD  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +      
Sbjct: 424  DD--FKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG-- 479

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612
             +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + LL
Sbjct: 480  LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELL 539

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+ 
Sbjct: 540  SQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQ 599

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ F
Sbjct: 600  YLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHF 659

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  +
Sbjct: 660  IEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANIL 719

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + + 
Sbjct: 720  SNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKV 779

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +   
Sbjct: 780  IVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDG 839

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
               +E++       +F       + K   E       ++  + E+  LGFY S HP+D  
Sbjct: 840  DLNIEQD-----GFLFD----ILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD-- 888

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                         +         I +       +Q +T+ G  + +VT ++  +  +   
Sbjct: 889  -KKFVAKQYLTIFKLSNAQNYKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLDGVI 945

Query: 1032 FP 1033
            FP
Sbjct: 946  FP 947


>gi|88195511|ref|YP_500316.1| DNA polymerase III subunit alpha superfamily protein [Staphylococcus
            aureus subsp. aureus NCTC 8325]
 gi|14194671|sp|Q9F1K0|DPO3A_STAA8 RecName: Full=DNA polymerase III subunit alpha
 gi|12082345|dbj|BAB20884.1| DnaE [Staphylococcus aureus]
 gi|87203069|gb|ABD30879.1| DNA polymerase III, alpha subunit superfamily [Staphylococcus aureus
            subsp. aureus NCTC 8325]
 gi|329726967|gb|EGG63424.1| putative DNA polymerase III subunit alpha [Staphylococcus aureus
            subsp. aureus 21189]
          Length = 1065

 Score =  526 bits (1354), Expect = e-146,   Method: Composition-based stats.
 Identities = 320/1022 (31%), Positives = 513/1022 (50%), Gaps = 81/1022 (7%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G 
Sbjct: 5    LNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFGM 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + +    N   T             V+L    +G + L +L S + +         +  
Sbjct: 65   TIYVTNGLNTVET-------------VVLAKNNDGLKDLYQLSSEIKMNALE----HVSF 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              L+      +I+               +  +   +   T    + D L +++Q      
Sbjct: 108  ELLKRFSNNMIIIF----------KKVGDQHRDIVQVFETHNDTYMDHLSISIQ------ 151

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                              V   N  + + +D +    L A+  +T +           H+
Sbjct: 152  --------------GRKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGAHF 197

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            L    + ++      E L     IA++C   L+ H  +LP++     +  +K     L  
Sbjct: 198  LT--EKEINQLDINQEYLTQVDVIAQKCDAELKYHQSLLPQYETPNDESAKKYLWRVLVT 255

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            +                  +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ 
Sbjct: 256  Q------------LKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVM 303

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ VI+Y
Sbjct: 304  VGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQY 363

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            VQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +      
Sbjct: 364  VQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQI 423

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            DD  F+E    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +      
Sbjct: 424  DD--FKEFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG-- 479

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612
             +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + LL
Sbjct: 480  LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELL 539

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+ 
Sbjct: 540  SQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQ 599

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ F
Sbjct: 600  YLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHF 659

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  +
Sbjct: 660  IEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANIL 719

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + + 
Sbjct: 720  SNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKV 779

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +   
Sbjct: 780  IVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDG 839

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
               +E++       +F       + K   E       ++  + E+  LGFY S HP+D  
Sbjct: 840  DLNIEQD-----GFLFD----ILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD-- 888

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                         +         I +       +Q +T+ G  + +VT ++  +  +   
Sbjct: 889  -KKFVAKQYLTIFKLSNAQNYKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLDGVI 945

Query: 1032 FP 1033
            FP
Sbjct: 946  FP 947


>gi|257880259|ref|ZP_05659912.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,230,933]
 gi|257883058|ref|ZP_05662711.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,502]
 gi|294623223|ref|ZP_06702097.1| DNA polymerase III subunit alpha [Enterococcus faecium U0317]
 gi|257814487|gb|EEV43245.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,230,933]
 gi|257818716|gb|EEV46044.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,502]
 gi|291597365|gb|EFF28542.1| DNA polymerase III subunit alpha [Enterococcus faecium U0317]
          Length = 1104

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 310/1029 (30%), Positives = 502/1029 (48%), Gaps = 57/1029 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++                 ++       GYQ+L++L SR  + +       
Sbjct: 63   IGLHLSYTYEE-------------KNYGLLAYAKDEIGYQQLMKLSSRKMIQE------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRH 189
                 L E+     +     ++  +  AF  N             + +F    Y+ L  +
Sbjct: 103  --KLELAEMTETDHLAFVVPANHSVSEAF--NKEDNFFGHWQFLLENVFTRNFYIGLTEN 158

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                     +  Q        L A +    L +E+  A +V+  +   + +  ++     
Sbjct: 159  TPDQ---LPEWYQYVIKENYSLCALHPIASLQQEELFALEVMKHIKEGSQIPLENLSASL 215

Query: 250  PDHYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P            +     +A L   V  A+R +  +        + +        K+  
Sbjct: 216  PLTANVYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNGKQAG 275

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR    + +E R+         + ++Y++RLD+EL+VI +M F  YFLIV D + +A 
Sbjct: 276  EYLRELCYSQVERRITD-------YTKEYQERLDYELSVIHQMGFDDYFLIVWDVMAFAH 328

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D   +RR+
Sbjct: 329  RNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPDNRRE 388

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN     ++
Sbjct: 389  EVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLKITLT 448

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                    +  E   A      L + +  LEGL RH STHAAG+VI D+ L +LVP+ R 
Sbjct: 449  QA-YKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLLELVPLQRG 507

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
                     + M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  IP +D +
Sbjct: 508  SDEAFLTQ-YTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLKEIPLNDAK 566

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  RK G
Sbjct: 567  TLLLFQRGETSGVFQFESAGIRNVLRRLDPENIEDIAAVNALYRPGPMQNIDTFIARKKG 626

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK K+ +D+
Sbjct: 627  KEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKDVLDE 686

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +K  F+SGA + G S+  A  ++E + KFA+YGFN+SHA AY+ + +Q A++K H+P  F
Sbjct: 687  EKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHHPGAF 746

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVG 846
              + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L AIKG+ 
Sbjct: 747  FTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFGLTAIKGIR 806

Query: 847  TTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I+     + PF S++ F  R+D + L   +L+SL   G  D    +R QL+  L
Sbjct: 807  RDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQLMLDL 866

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +   +   +     +    ++           +  E+ +      R + E+  LG Y SG
Sbjct: 867  EGKIQNIVY-----SGGSLDLLGIM------ALKEEEVADYTLEERLKLEEEYLGIYLSG 915

Query: 966  HPLDVYKPILRKMGIKGYEESV-ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            HP         ++ +    + +   +    + L  M+   ++ +T+KG  + +V  ++ +
Sbjct: 916  HP----AEGFDRLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMAFVEGTDSS 971

Query: 1025 KEYEANFFP 1033
             E     FP
Sbjct: 972  GEISVTVFP 980


>gi|86750673|ref|YP_487169.1| error-prone DNA polymerase [Rhodopseudomonas palustris HaA2]
 gi|123292295|sp|Q2IU52|DNAE2_RHOP2 RecName: Full=Error-prone DNA polymerase
 gi|86573701|gb|ABD08258.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris HaA2]
          Length = 1165

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 254/1108 (22%), Positives = 429/1108 (38%), Gaps = 127/1108 (11%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P +  + V +++S LEG     + + + +     AI I D N L   +    +     
Sbjct: 2    NAPRYAEIGVTTNFSFLEGGSHPQDYVHQASRLGLDAIGIADRNTLAGVVRAYSELDNEE 61

Query: 67   I----QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
            +    + +IG +L                     P ++   +    Y RL  L+S   L 
Sbjct: 62   LAYKPKLLIGARLCF---------------VDGTPDVLAYPTDRAAYGRLCRLLSAGKLR 106

Query: 123  DQGKQSVRICLSWLQEIGTEG--------LIMLTGGSSGPIDRAFFFN------------ 162
              GK    +  + L+   +             LT  S+    R                 
Sbjct: 107  -AGKGECHLTFADLEAFVSSNAARPFPSSWPGLTRPSTSLQPRVLQDVDARDKPGHDGGK 165

Query: 163  ------------------SSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQVVQL 203
                               ++     L     L    +++ L  + RG D+ R +++ ++
Sbjct: 166  REIGRSQILFVLMPPYRFQAKAITAALERLTALNSGNVWLALAPYYRGDDKRRLARLRRI 225

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVS 262
            A   ++P +ATN+ L+         DVL  V   T + +  R      + +LK  +EM  
Sbjct: 226  AAAADVPGIATNDVLYHHPSRRALQDVLTCVRDKTTIDKAGRRLEGNAERHLKPAAEMAR 285

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
            +F    +A+  T+  A R SF L       P           K  +  L +    G+   
Sbjct: 286  LFRADLDAVAETLRFADRISFTLDELKYHYPDEPVPPG----KTAQQHLEDLTREGIATY 341

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
               G       +   R  +  EL +IA+  ++ YFL V D +++A+  NI    GRGS A
Sbjct: 342  FPNG------ISDRLRATIAKELTLIAKRDYAHYFLTVHDIVRYARSQNIL-CQGRGSAA 394

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
             S   Y L IT +DP    LLFERF++ +R   PD D+DF   RR+EV++Y+  +YG  R
Sbjct: 395  NSAVCYVLGITCVDPTEIDLLFERFVSEERDEPPDIDVDFEHSRREEVMQYIYRRYGRHR 454

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
             A + T    + ++A+RDVG+AL +       L   +       +S        R     
Sbjct: 455  AAIVSTVIHYRPRSAIRDVGKALGLSEDVTAALADTVWGSWGKGLS----EMQVRQAGLD 510

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
              +P + R +E++ +L G  RH S H  G V+    L   VP+     +D    +++   
Sbjct: 511  PTNPMIGRAVELATELIGFPRHLSQHVGGYVLTQDRLDSYVPIGNAAMADRTFIEWDKDD 570

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL--SLIPFDDHETYHLLTTKGTLGI 620
            I+   ++K D L L  LT ++K  D +AQ          +   DD+  Y +L    ++G+
Sbjct: 571  IDAVKMMKVDVLALGMLTCIRKGFDLIAQHKGVRFQLSDIKSEDDNNVYQMLQRGESIGV 630

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHP-- 676
            FQ+ES      L  ++P C  D++  V++ RPGPI   +V+    R+NG+E +V   P  
Sbjct: 631  FQVESRAQMNMLPRLKPRCFYDLVIEVAIVRPGPIQGDMVHPYLRRRNGQEPVVYPSPSG 690

Query: 677  ------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQK 729
                   +  +L +T GV ++QEQ M+IA   + ++  EA+ LRRAM        + K +
Sbjct: 691  EAGDKNELQQILGKTLGVPLFQEQAMRIAIEAAHFTPDEANQLRRAMATFRNVGTIGKFE 750

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             + I      G   T A N FE +  F  YGF +SHAA++A + Y +AWMK  +P  F  
Sbjct: 751  SKMIGNLMARGYDATFAKNCFEQIKGFGSYGFPESHAASFAKLVYVSAWMKCEHPDAFCC 810

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----NRIYYSLAAIKG 844
            A +  +        +   DAR   +++ P  V+       + +     + +      I G
Sbjct: 811  ALLNSQPMGFYAPAQIVGDARANKVEVRPVDVSFSDGQCTLEERCGAYHAVRLGFRQIDG 870

Query: 845  VG-TTTARHIMEASAD-----------------KPFDSLEDFCSRVDSKKLNRRVLESLV 886
                      +   A                   PF SLE F        L +R L  L 
Sbjct: 871  FRWADPDEERVRLEAGLPPSDDWAARIVAARARGPFGSLEQFAR---ITALPKRALILLA 927

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             A A    G  R   L ++  +                 +F                   
Sbjct: 928  DADAFRSLGLDRRAALWAVRRLPDDV----------PLPLFEAASAREQQDEQAAPLPQM 977

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT-IRGNNIRLAAMVVSKQ 1005
              +     + + +     GHPL+  + +     +    E   T   G  +R A +V+ +Q
Sbjct: 978  PMAEHVVADYQTVRLSLKGHPLEFLRAVFATERVVTCREVSETRRNGRRVRCAGVVLVRQ 1037

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  +  G  + ++T  +         +P
Sbjct: 1038 RPGSASG--VIFMTIEDETGIANIVVWP 1063


>gi|69247357|ref|ZP_00604321.1| DNA polymerase III alpha subunit [Enterococcus faecium DO]
 gi|257891358|ref|ZP_05671011.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260560443|ref|ZP_05832617.1| DNA polymerase III alpha subunit [Enterococcus faecium C68]
 gi|314937961|ref|ZP_07845274.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133a04]
 gi|314940993|ref|ZP_07847895.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133C]
 gi|314947550|ref|ZP_07850962.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0082]
 gi|314953129|ref|ZP_07856084.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133A]
 gi|314993023|ref|ZP_07858417.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133B]
 gi|314995294|ref|ZP_07860404.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133a01]
 gi|68194880|gb|EAN09352.1| DNA polymerase III alpha subunit [Enterococcus faecium DO]
 gi|257827718|gb|EEV54344.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260073445|gb|EEW61773.1| DNA polymerase III alpha subunit [Enterococcus faecium C68]
 gi|313590479|gb|EFR69324.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133a01]
 gi|313592474|gb|EFR71319.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133B]
 gi|313594797|gb|EFR73642.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133A]
 gi|313600185|gb|EFR79028.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133C]
 gi|313642684|gb|EFS07264.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0133a04]
 gi|313645993|gb|EFS10573.1| putative DNA polymerase III DnaE [Enterococcus faecium TX0082]
          Length = 1104

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 310/1029 (30%), Positives = 502/1029 (48%), Gaps = 57/1029 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++                 ++       GYQ+L++L SR  + +       
Sbjct: 63   IGLHLSYTYEE-------------KNYGLLAYAKDEIGYQQLMKLSSRKMIQE------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRH 189
                 L E+     +     ++  +  AF  N             + +F    Y+ L  +
Sbjct: 103  --KLELAEMTETDHLAFVVPANHSVSEAF--NKEDNFFGHWQFLLENVFTRNFYIGLTEN 158

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                     +  Q        L A +    L +E+  A +V+  +   + +  ++     
Sbjct: 159  TPDQ---LPEWYQYVIKENYSLCALHPIASLQQEELFALEVMKHIKEGSQIPLENLSASL 215

Query: 250  PDHYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P            +     +A L   V  A+R +  +        + +        K+  
Sbjct: 216  PLTANVYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNGKQAG 275

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR    + +E R+         + ++Y++RLD+EL+VI +M F  YFLIV D + +A 
Sbjct: 276  EYLRELCYSQVERRITD-------YTKEYQERLDYELSVIHQMGFDDYFLIVWDVMAFAH 328

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D   +RR+
Sbjct: 329  RNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPDNRRE 388

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN     ++
Sbjct: 389  EVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLKITLT 448

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                    +  E   A      L + +  LEGL RH STHAAG+VI D+ L +LVP+ R 
Sbjct: 449  QA-YKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLLELVPLQRG 507

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
                     + M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  IP +D +
Sbjct: 508  SDEAFLTQ-YTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLKEIPLNDAK 566

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  RK G
Sbjct: 567  TLLLFQRGETSGVFQFESAGIRNVLRRLDPENIEDIAAVNALYRPGPMQNIDTFIARKKG 626

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK K+ +D+
Sbjct: 627  KEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKDVLDE 686

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +K  F+SGA + G S+  A  ++E + KFA+YGFN+SHA AY+ + +Q A++K H+P  F
Sbjct: 687  EKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHHPGAF 746

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVG 846
              + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L AIKG+ 
Sbjct: 747  FTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFGLTAIKGIR 806

Query: 847  TTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I+     + PF S++ F  R+D + L   +L+SL   G  D    +R QL+  L
Sbjct: 807  RDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQLMLDL 866

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +   +   +     +    ++           +  E+ +      R + E+  LG Y SG
Sbjct: 867  EGKIQNIVY-----SGGSLDLLGIM------ALKEEEVADYTLEERLKLEEEYLGIYLSG 915

Query: 966  HPLDVYKPILRKMGIKGYEESV-ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            HP         ++ +    + +   +    + L  M+   ++ +T+KG  + +V  ++ +
Sbjct: 916  HP----AEGFDRLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMAFVEGTDSS 971

Query: 1025 KEYEANFFP 1033
             E     FP
Sbjct: 972  GEISVTVFP 980


>gi|293569257|ref|ZP_06680555.1| DNA polymerase III subunit alpha [Enterococcus faecium E1071]
 gi|291587963|gb|EFF19813.1| DNA polymerase III subunit alpha [Enterococcus faecium E1071]
          Length = 1104

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 310/1029 (30%), Positives = 500/1029 (48%), Gaps = 57/1029 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++                 ++       GYQ+L++L SR  + +       
Sbjct: 63   IGLHLSYTYEE-------------KNYGLLAYAKDEIGYQQLMKLSSRKMIQE------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-KLFGDRLYVNLQRH 189
                 L E+     +     ++  +  AF  N               +F    Y+ L  +
Sbjct: 103  --KLELAEMTETDHLAFVVPANHSVSEAF--NKEDNFFGHWQFLLGNVFTRNFYIGLTEN 158

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                     +  Q        L A +    L +E+  A +V+  +   + +  ++     
Sbjct: 159  TPDQ---LPEWYQYVIKENYSLCALHPIASLQQEELFALEVMKHIKEGSQIPLENLSASL 215

Query: 250  PDHYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P            +     +A L   V  A+R +  +        + +        K+  
Sbjct: 216  PLTANGYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNGKQAG 275

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR    + +E R+         + ++Y++RLD+EL+VI +M F  YFLIV D + +A 
Sbjct: 276  EYLRELCYSQVERRITD-------YTKEYQERLDYELSVIHQMGFDDYFLIVWDVMAFAH 328

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP R +MPD D+D   +RR+
Sbjct: 329  RNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPKRFTMPDIDLDIPDNRRE 388

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN     ++
Sbjct: 389  EVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLKITLT 448

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                    +  E   A      L + +  LEGL RH STHAAG+VI D+ L +LVP+ R 
Sbjct: 449  QA-YKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLLELVPLQRG 507

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
                     + M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  IP +D +
Sbjct: 508  SDEAFLTQ-YTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLKEIPLNDAK 566

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  RK G
Sbjct: 567  TLLLFQRGETSGVFQFESAGIRNVLRRLDPENIEDIAAVNALYRPGPMQNIDTFIARKKG 626

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK K+ +D+
Sbjct: 627  KEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKDVLDE 686

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +K  F+SGA + G S+  A  ++E + KFA+YGFN+SHA AY+ + +Q A++K H+P  F
Sbjct: 687  EKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHHPGAF 746

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVG 846
              + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L AIKG+ 
Sbjct: 747  FTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFGLTAIKGIR 806

Query: 847  TTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I+     + PF S++ F  R+D + L   +L+SL   G  D    +R QL+  L
Sbjct: 807  RDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQLMLDL 866

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +   +   +     +    ++           +  E+ +      R + E+  LG Y SG
Sbjct: 867  EGKIQNIVY-----SGGSLDLLGIM------ALKEEEVADYTLEERLKLEEEYLGIYLSG 915

Query: 966  HPLDVYKPILRKMGIKGYEESV-ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            HP         ++ +    + +   +    + L  M+   ++ +T+KG  + +V  ++ +
Sbjct: 916  HP----AEGFDRLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMAFVEGTDSS 971

Query: 1025 KEYEANFFP 1033
             E     FP
Sbjct: 972  GEISVTVFP 980


>gi|253732353|ref|ZP_04866518.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            USA300_TCH959]
 gi|253723875|gb|EES92604.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            USA300_TCH959]
          Length = 1065

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 315/1022 (30%), Positives = 510/1022 (49%), Gaps = 81/1022 (7%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G 
Sbjct: 5    LNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFGM 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + +    N   T             V+L    +G + L +L S + +         +  
Sbjct: 65   TIYVTNGLNTVET-------------VVLAKNNDGLKDLYQLSSEIKMNALE----HVSF 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              L+      +I+               +  +   +   T    + D L +++Q      
Sbjct: 108  ELLKRFSNNMIIIF----------KKVGDQHRDIVQVFETHNDTYMDHLSISIQ------ 151

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                              V   N  + + +D +    L A+  +T +           H+
Sbjct: 152  --------------GRKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGAHF 197

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            L    + ++      E L     IA++C   L+ H  +LP++     +  +K     L  
Sbjct: 198  LT--EKEINQLDINQEYLTQVDVIAQKCDAELKYHQSLLPQYETPNDESAKKYLWRVLVT 255

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            +                  +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ 
Sbjct: 256  Q------------LKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVM 303

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ VI+Y
Sbjct: 304  VGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQY 363

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            VQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +      
Sbjct: 364  VQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQI 423

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            DD  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +      
Sbjct: 424  DD--FKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG-- 479

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612
             +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + LL
Sbjct: 480  LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELL 539

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+ 
Sbjct: 540  SQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQ 599

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ F
Sbjct: 600  YLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHF 659

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  +
Sbjct: 660  IEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANIL 719

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + + 
Sbjct: 720  SNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKV 779

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I++    +  +    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +   
Sbjct: 780  IVDERYQNGKYKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDG 839

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
                  +   + + +        + K   E       ++  + E+  LGFY S HP+D  
Sbjct: 840  ------DLNIEQDGLLFD---ILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD-- 888

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                         +         I +       +Q +T+ G  + +V  ++  +  +   
Sbjct: 889  -KKFVAKQYLTIFKLSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVILNDGIETLDGVI 945

Query: 1032 FP 1033
            FP
Sbjct: 946  FP 947


>gi|312196206|ref|YP_004016267.1| DNA polymerase III subunit alpha [Frankia sp. EuI1c]
 gi|311227542|gb|ADP80397.1| DNA polymerase III, alpha subunit [Frankia sp. EuI1c]
          Length = 1213

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 277/1118 (24%), Positives = 457/1118 (40%), Gaps = 123/1118 (11%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
             L  HS++S L+GA    +++++ A     A+A+TD + ++  + F++ A   G++ + G
Sbjct: 67   ELHCHSAFSFLDGASQPEDLVEEAARLGLSALALTDHDGMYGVVRFAEAAEQVGLRTLYG 126

Query: 73   CQLDIDMQDNLKMTNQG----------------------KTPFPTVPSIVLLVSTAEGYQ 110
             ++ +    +  +                            P P    +++L  T EGY+
Sbjct: 127  VEVSLAPGPDRPVPGPDTGEPRPGPRRPGPPGEAPAPRPGVPDPVGDHLLVLARTPEGYR 186

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEG-LIMLTGGSSGPIDRAFFFNSSQVAEK 169
            RL   VS  +L    K      L  L     +G   +LTG   G +  A        A  
Sbjct: 187  RLSRAVSDAHLAGGEKGRPLTSLDVLAAAAGDGHWQILTGCRKGLVPAALAAGGLDAARV 246

Query: 170  RLLTFKKLFG-DRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
             L      FG D + V L  H    D  R   +  LA    L  VATNN  + +      
Sbjct: 247  ALDGLVGRFGRDNVAVELWDHAHPLDSDRNDALYGLAQEAGLTCVATNNVHYATPSAGRL 306

Query: 228  HDVLMAVA-HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
              V+ ++    ++             +L++ +EM   F+  P A+E    +    +F L+
Sbjct: 307  AAVMASIRARRSLDEMDGHLPPAGAAHLRSGAEMTDRFARYPGAVEAAARVGTESAFNLR 366

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
            + AP LP F           E + LR   + G   R                 +L  EL 
Sbjct: 367  LVAPRLPDFPVPPG----HTEASWLRLLTMQGAARRY---GPPVRERVGGAYDQLAHELT 419

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            +I  + F GYFLIV D +++ ++ +I    GRGS A S   YAL IT +D + F LLFER
Sbjct: 420  LIESLGFPGYFLIVHDIVEFCRREDIL-CQGRGSAANSAVCYALGITGVDAVSFGLLFER 478

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL P+R   PD D+D    RR+EVI+YV  +YG +R AQ+    S ++++A+RDV RAL 
Sbjct: 479  FLAPERDGPPDIDLDIESGRREEVIQYVYGRYGRDRAAQVANVISYRSRSAVRDVARALG 538

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP---------------SVDRL 511
                Q D     I      P +       +         P                   +
Sbjct: 539  FSPGQQDAWSSGIDRWSPLPAAAPPAPPAAVPAVPAAVTPGPGQAVEPADRIGTAIPVEV 598

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
            + ++ +L G  RH   H+ G+VI DRP++++VP+         V Q++      AGL+KF
Sbjct: 599  VGLAGQLLGFPRHLGIHSGGMVICDRPVAEVVPVEWARMPGRTVIQWDKDDCAVAGLVKF 658

Query: 572  DFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
            D LGL  L  L  +   +     +  DL  IP +D   Y +L    ++G+FQ+ES     
Sbjct: 659  DLLGLGMLGALHLAFALIRDHHGRHLDLGEIPPEDPAVYDMLCAADSIGVFQVESRAQMA 718

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
             L  ++P    D++  V+L RPGPI   ++  Y  R+N  E++   HPL++  LK+T G+
Sbjct: 719  TLPRLRPRRFYDLVVEVALIRPGPIQGGSVHPYIRRRNDLEEVTYPHPLLERSLKKTLGI 778

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAV 747
             ++QEQ+MQ+A  ++G++ +EAD LRRAM  K+  E +D+ +ERF  G + NGI+   A 
Sbjct: 779  PLFQEQLMQMAIDVAGFTAAEADQLRRAMGAKRATERIDRLRERFYQGMATNGITGAAAD 838

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
             ++  LA FA++GF +SH+ ++A + Y +AW+K +YP  F AA +  +       +    
Sbjct: 839  ELYTKLAAFANFGFPESHSVSFAFLVYASAWIKLYYPAAFCAALLNAQPMGFYSPQSLVA 898

Query: 808  DARQFNIQIM------------------PPSVNTPCVDFKVGDNRI-------YYSLAA- 841
            DAR+  + +                   P  +  P  D +     +          + A 
Sbjct: 899  DARRHGVTVHGPDLNASGAGAILTGEGRPAGLAEPVWDGEPAGEPVGDVPAPARIGVGAA 958

Query: 842  ---------------------------IKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
                                       ++ +GT  A  I+ A     P+  + D   R  
Sbjct: 959  AGQAPPNGEADGLTGPRHPAVRLGLAGVRLIGTANAERIVAARDVGGPYRDMADLARRTG 1018

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
                    L +   AGA  CFG +R +           A W          +        
Sbjct: 1019 LAAAQLEALAT---AGAFGCFGLARRE-----------ALWAAGAAAQARPDRLEGTALV 1064

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
                         + +     +    G   S +P +  +  L  +G+             
Sbjct: 1065 GDPAAVAAHLPGMSGAEEIVADLWATGITPSRYPTEFVRDRLDALGVVVATRLARLPGDR 1124

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             + +A +V  +Q+  T  G+   ++   +         
Sbjct: 1125 RVVVAGVVTHRQRPATAGGT--TFLNLEDETGLVNVIC 1160


>gi|88800509|ref|ZP_01116072.1| DNA polymerase III, alpha subunit [Reinekea sp. MED297]
 gi|88776740|gb|EAR07952.1| DNA polymerase III, alpha subunit [Reinekea sp. MED297]
          Length = 1050

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 255/1061 (24%), Positives = 436/1061 (41%), Gaps = 101/1061 (9%)

Query: 5    LEKSP----SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +  S      F  L   S++S L  A     ++ + +     A+A+TD  ++   +   +
Sbjct: 1    MANSSETDLGFAELHCLSNFSFLRAASHPQELIRRASELGYRALAVTDECSVAGVVRAWR 60

Query: 61   KACAA--GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            +       I+ I+G +  +D                   ++VLL    EGY++L +L++R
Sbjct: 61   ERKDNELDIKLIVGSEFLVD-----------------GHTLVLLARNNEGYRQLCQLITR 103

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIML-TGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
            M    + K      L   Q+  T   + L      G +               L      
Sbjct: 104  MRRRAE-KGQYDARLHDFQQTSTSDCLCLYLPPRHGDV------------RATLQHLCHQ 150

Query: 178  FGDRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            F  RL++        D  R   +V QLA  ++LP+VA+++      E  + HD L A+  
Sbjct: 151  FEKRLWLLADNSLDNDAPRLRERVEQLAEDYQLPIVASSHVQMHIPERKKLHDCLTAIRA 210

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
            +    +  R ++ P+     RS          + L N+V IA +C F L       P+ +
Sbjct: 211  NQP-IEAIRHQLKPNAENHLRSLKKLAHIFPADWLHNSVHIADQCQFELDSIRYRYPKDV 269

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                   Q      LR     G++ R      A      +  +R+D EL +I    F  Y
Sbjct: 270  LP----GQYSAGEYLRLLVKQGVQRRFGSQVEA------ELWKRIDTELALIKLKGFEHY 319

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V D +++A+   I    GRGSGA SV  Y L IT+++P   SLLFERF++  R   P
Sbjct: 320  FLTVYDIVRFARSRGIL-CQGRGSGANSVVCYVLGITEVNPREASLLFERFISEGRKDPP 378

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+DF  +RR+E+I+Y+  KYG +R A   T  + + K+ALRDV +AL +    +D+  
Sbjct: 379  DIDVDFEHERREEIIQYLYEKYGRKRAALAATVITYRRKSALRDVAKALGIQVDLLDQKI 438

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
                        +  I +D     A   D     L    +++    RH S H  G VI +
Sbjct: 439  ANYGWRYRSKDWIDEIINDGLGLSAYQIDIFKTLL----KEISSFPRHLSQHVGGFVITE 494

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVK 595
              ++ LVP+     +D  V Q++   +E   L+K D L L  L+ ++KSLD +       
Sbjct: 495  GVVADLVPIENASMADRTVIQWDKDDLESLSLMKVDILALGMLSAVRKSLDLIRDFHQQP 554

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            + +  I  DD + + ++    T+G+FQ+ES      L  ++P C  D++  V++ RPGPI
Sbjct: 555  IQIQDIDRDDADVFRMIQKADTVGVFQIESRAQMSMLPRLKPHCYYDLVVQVAIVRPGPI 614

Query: 656  DNIVVYNN--RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               +V+    R+ GKE +V   P +  +L+ T GV I+QEQV+++A + + ++ +EAD L
Sbjct: 615  HGDMVHPYLLRREGKEPVVYPKPELKEVLERTYGVPIFQEQVIKLAMVAADFNGTEADEL 674

Query: 714  RRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RR+M    K   M     +       NG  +     I   +  F +YGF +SHAA +A+I
Sbjct: 675  RRSMASWKKTGHMSHLHAKLSEKMLANGYPQDYIDRINRQIEGFGEYGFPESHAAGFALI 734

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG- 831
            +Y ++W+K HYP  F  A +           +  QD ++  +++ P  +N    D  +  
Sbjct: 735  AYVSSWLKCHYPAAFCCALLNSLPMGFYSASQLVQDVQRHGVKVRPVDINHSDWDSTLEP 794

Query: 832  ------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                  D  +   L  +KG+    A  ++       F SL           L++  +E+L
Sbjct: 795  DNTSTGDAALRLGLRRVKGLSEQAAISLLLYRPADGFQSLRQLEK---IPGLHKGDIEAL 851

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              A AL      R Q       +                ++ +                 
Sbjct: 852  ASADALAGIAGHRFQARWQAAAMH------------PQNDLLSDAFDNDDTA-----LPA 894

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN----------- 994
             +       +Q  +G     H + + +           ++ +A                 
Sbjct: 895  PDDYDNLVEDQDSVGLSLRTHLVRLLRERDMLPDTPTADQLLALANEAQRQRRGNPDDKI 954

Query: 995  ---IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               I ++ ++ ++Q  KT  G  + +VT  +         +
Sbjct: 955  KVPIVVSGLITNRQMPKTATG--VTFVTLEDHTGNINLIVW 993


>gi|227510300|ref|ZP_03940349.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp. gravesensis
            ATCC 27305]
 gi|227189952|gb|EEI70019.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp. gravesensis
            ATCC 27305]
          Length = 1093

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 330/1009 (32%), Positives = 511/1009 (50%), Gaps = 48/1009 (4%)

Query: 32   ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKT 91
            ++ +       A+A+TD N ++ A+EF      AGIQPIIG  L++           G  
Sbjct: 1    MVTEAKKRGYKALAMTDINVMYGAVEFYDTCIDAGIQPIIGLTLNL----------PGVM 50

Query: 92   PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS 151
                  SI+LL     GYQ L+++ +      +      + +  L     +GL ++    
Sbjct: 51   LSENNYSILLLAKNQTGYQNLLKISTL-----KNSGETDVTIDQL-NGRLDGLYVILPPL 104

Query: 152  SGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQRHRGYDRYRESQVVQLAYTHEL 209
            +  I+       S      +     L      L   +  H          + ++A  +++
Sbjct: 105  A-EINDLLLQGKSADISDLISKLMDLGLTKQDLKFGVDYHSS--DALIDMLSKVAADNQV 161

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
             L+A     +L+ EDY    VL A+A  T +S           Y     + +        
Sbjct: 162  QLIADAPVQYLNAEDYFPMQVLKAIAAGTKISNVAELSQQVGPYFLRPQDRMEKEYQRLH 221

Query: 270  ---ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
               AL+   E+   C   ++   P LP+F          E    LR     GL  RL   
Sbjct: 222  LNAALQAIDEVVSNCHVEIKKKQPKLPQFETPNDM----EPGQYLRQLCEKGLSKRLEAA 277

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
             I+       YR RLD EL+VI  M F  YFLIV D I +A +  I  GPGRGS AGS+ 
Sbjct: 278  HISDDAP---YRHRLDRELSVIHSMGFDDYFLIVWDVINFAHQARIITGPGRGSAAGSLV 334

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AY L ITD+DP+++ LLFERFLNP+R+ MPD D+D   D+RD+VI+YV  KYGH+RVAQI
Sbjct: 335  AYTLFITDVDPIKYELLFERFLNPERVQMPDIDLDIPDDKRDDVIQYVHQKYGHQRVAQI 394

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
            ITFG+L AK A RDVGR   +  +Q D   K IP+   H     A  +  + +       
Sbjct: 395  ITFGTLAAKQATRDVGRVFGLNPNQQDVWSKAIPSAF-HVTLADAYHNSQQLKNLVADSD 453

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
                L + +Q LEGL RH STHAAG+V+ D  L  LVP+  D    L +TQ++  ++E  
Sbjct: 454  LNKSLFKTAQVLEGLPRHYSTHAAGLVLSDNLLVDLVPLQ-DGNDGLLMTQYSKDYVESV 512

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GL+K DFLGL+ LT+L  +L  + Q  G K+++S IP DD +T  L     T G+FQ ES
Sbjct: 513  GLLKIDFLGLRNLTILADALAEIKQATGQKINISQIPLDDKKTLKLFANGDTTGVFQFES 572

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
            SG+R  L  + P+  ED+  + +LYRPGP++NI     RK+ +E +      ++ +LK T
Sbjct: 573  SGIRSVLRRLHPEQFEDVALVNALYRPGPMENIDEVVKRKSHQEALTYPDQSLEDILKST 632

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             GVI+YQEQVM +A  ++G+SL +AD+LRRAM KK  + MD+ K  F++GA K G  K +
Sbjct: 633  YGVIVYQEQVMLVASKMAGFSLGQADILRRAMSKKKLKVMDRMKSLFLTGAEKKGHPKQV 692

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A  +F+ + KFA+YGFNKSHA AY+ ++Y+ A++K ++P EF  A +    ++  K+K++
Sbjct: 693  AEKVFDYIEKFANYGFNKSHAVAYSKMAYELAYLKVYFPGEFHVALLNSVQNSSVKMKEY 752

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDS 864
              DA+   ++++ P +N    DF   D +I + LA+IKGV     + I+     +  + S
Sbjct: 753  LSDAKSMGVKVVAPDINKSRADFSYQDQQIVFGLASIKGVRHDMVQDILNDRDQNGRYKS 812

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
              +  +R+  K     ++ +L+++GALD F Y+R +L+ +        Q      +    
Sbjct: 813  FPNLLARLSDKYRKPDLINALIYSGALDGFSYNRSELISAAPEFISSIQL-----SGDSM 867

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            ++F       + + T+ +        R E E   LG Y SGHP++ +  + +++  K   
Sbjct: 868  SLF------KALEPTVPRKPEMPLMQRLEKENDYLGAYLSGHPVERFTALRKRLNAKLTN 921

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + V  +    + L   +   +  +T+ G ++ +   S+   E     FP
Sbjct: 922  QLVVGMN--QVVLILYITKVKIIRTKTGKQMAFFDGSDEVGEMSVTVFP 968


>gi|253734514|ref|ZP_04868679.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            TCH130]
 gi|253727568|gb|EES96297.1| DNA polymerase III alpha subunit [Staphylococcus aureus subsp. aureus
            TCH130]
          Length = 1065

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 317/1022 (31%), Positives = 512/1022 (50%), Gaps = 81/1022 (7%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G 
Sbjct: 5    LNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFGM 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + +    N   T             V+L    +G + L +L S + +         +  
Sbjct: 65   TIYVTNGLNTVET-------------VVLAKNNDGLKDLYQLSSEIKMNALE----HVSF 107

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              L+      +I+               +  +   +   T    + D L +++Q      
Sbjct: 108  ELLKRFSNNMIIIF----------KKVGDQHRDIVQVFETHNDTYMDHLSISIQ------ 151

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                              V   N  + + +D +    L A+  +T +           H+
Sbjct: 152  --------------GRKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGAHF 197

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            L    + ++      E L     IA++C   L+ H  +LP++     +  +K     L  
Sbjct: 198  LT--EKEINQLDINQEYLTQVDVIAQKCDAELKYHQSLLPQYETPNDESAKKYLWRVLVT 255

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            +                  +   Y +RL +E  VI  M F  YFLIV+D I +AK N++ 
Sbjct: 256  Q------------LKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVM 303

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ VI+Y
Sbjct: 304  VGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQY 363

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            VQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +      
Sbjct: 364  VQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQI 423

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            DD  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +      
Sbjct: 424  DD--FKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTG-- 479

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLL 612
             +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + + LL
Sbjct: 480  LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELL 539

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K+ 
Sbjct: 540  SQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQ 599

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
             +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ +++ F
Sbjct: 600  YLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHF 659

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  +
Sbjct: 660  IEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANIL 719

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  + + 
Sbjct: 720  SNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKV 779

Query: 853  IMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I++    +  +    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +   
Sbjct: 780  IVDERYQNGKYKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDG 839

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
               +E++       +F       + K   E       ++  + E+  LGFY S HP+D  
Sbjct: 840  DLNIEQD-----GFLFD----ILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVD-- 888

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                         +         I +       +Q +T+ G  + +V  ++  +  +   
Sbjct: 889  -KKFVAKQYLTIFKLSNAQNNKPILV--QFDKVKQIRTKNGQNMAFVILNDGIETLDGVI 945

Query: 1032 FP 1033
            FP
Sbjct: 946  FP 947


>gi|293556333|ref|ZP_06674915.1| DNA polymerase III subunit alpha [Enterococcus faecium E1039]
 gi|291601501|gb|EFF31771.1| DNA polymerase III subunit alpha [Enterococcus faecium E1039]
          Length = 1104

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 308/1029 (29%), Positives = 501/1029 (48%), Gaps = 57/1029 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++                 ++       GYQ+L++L SR  + +       
Sbjct: 63   IGLHLSYTYEE-------------KNYGLLAYAKDEIGYQQLMKLSSRKMIQE------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRH 189
                 L E+     +     ++  +  AF  N             + +F    Y+ L  +
Sbjct: 103  --KLELAEMTETDHLAFVVPANHSVSEAF--NKEDNFFGHWQFLLENVFTRNFYIGLTEN 158

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                     +           L A +    L +E+  A +V+  +   + +  ++     
Sbjct: 159  TPDQ---LPEWYHYVIKENYSLCALHPIASLQQEELFALEVMKHIKDGSQIPLENLSASL 215

Query: 250  PDHYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P            +     +A L   V  A+R +  +        + +        K+  
Sbjct: 216  PLTANGYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNGKQAG 275

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR    + +E R+         + ++Y++RLD+EL+VI +M F  YFLIV D + +A 
Sbjct: 276  EYLRELCYSQVERRITD-------YTKEYQERLDYELSVIHQMGFDDYFLIVWDVMAFAH 328

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D   +RR+
Sbjct: 329  RNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPDNRRE 388

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN     ++
Sbjct: 389  EVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLKITLT 448

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                    +  E   A      L + +  LEGL RH STHAAG+VI D+ L +LVP+ R 
Sbjct: 449  QA-YKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLLELVPLQRG 507

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
                     + M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  IP +D +
Sbjct: 508  SDEAFLTQ-YTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLKEIPLNDAK 566

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T G+FQ ES+G+R  L  + P+ IED+ A+ +LYRPGP+ NI  +  RK G
Sbjct: 567  TLLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDVAAVNALYRPGPMQNIDTFIARKKG 626

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK K+ +D+
Sbjct: 627  KEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKDVLDE 686

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +K  F+SGA + G S+  A  ++E + KFA+YGFN+SHA AY+ + +Q A++K H+P  F
Sbjct: 687  EKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHHPGAF 746

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVG 846
              + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L AIKG+ 
Sbjct: 747  FTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKKEIRFGLTAIKGIR 806

Query: 847  TTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I+     + PF S++ F  R+D + L   +L+SL   G  D    +R QL+  L
Sbjct: 807  RDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQLMLDL 866

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +   +   +     +    ++           +  E+ +      R + E+  LG Y SG
Sbjct: 867  EGKIQNIVY-----SGGSLDLLGIM------ALKEEEVADYTLEERLKLEEEYLGIYLSG 915

Query: 966  HPLDVYKPILRKMGIKGYEESV-ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            HP         ++ +    + +   +    + L  M+   ++ +T+KG  + +V  ++ +
Sbjct: 916  HP----AEGFDRLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMAFVEGTDSS 971

Query: 1025 KEYEANFFP 1033
             E     FP
Sbjct: 972  GEISVTVFP 980


>gi|56461666|ref|YP_156947.1| DNA polymerase III alpha subunit [Idiomarina loihiensis L2TR]
 gi|71151826|sp|Q5QUT9|DNAE2_IDILO RecName: Full=Error-prone DNA polymerase
 gi|56180676|gb|AAV83398.1| DNA polymerase III alpha subunit [Idiomarina loihiensis L2TR]
          Length = 1039

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 239/1037 (23%), Positives = 433/1037 (41%), Gaps = 83/1037 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S YS L  A S   ++ +       AIAITD  ++   ++  Q++ A  I+ +
Sbjct: 16   FAELHSLSHYSFLRSAASPEELVRRADDLGYAAIAITDECSVAGIVKAYQESKARDIKLV 75

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +  +                P V ++V+L  T E Y  L + ++  +     K   +
Sbjct: 76   VGSEFRV----------------PEVGTLVVLAPTREAYAELCKKITL-FRSRSEKGHYQ 118

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL--LTFKKLFGDRLYVNLQR 188
              +    +  ++ L               +      A+        K ++  R ++  +R
Sbjct: 119  ANIDDFFDGFSQCL-------------LLWQPDFSQAQLLAIGEKLKSVWQQRFWLLYER 165

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRP 246
            H +  D      +V+L    ++ +         + E    +D+L A+ H  ++  Q    
Sbjct: 166  HYQADDERAFQAMVELQQAVKVKVTCAGGVCMATIEQQPLYDILNAIQHGGSLAHQPGLA 225

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +H+L++ SE+   +     A   T+ IA++C F L       P  +  E       
Sbjct: 226  SNNAEHHLRSLSELQQCYPQKWLA--ETLVIAQQCQFCLSELRYEYPAELVPEGM----S 279

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L+     G   R  QG        +  +     EL++I    +  +FL + D +++
Sbjct: 280  ASGYLKQLTEQGARWRYPQGV------PESIKALYLKELSLIKEQSYEPFFLTIHDLVRF 333

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A++  I    GRGS A SV  Y L IT ++P +  +LFERF++ +R   PD D+DF  +R
Sbjct: 334  AREQGILF-QGRGSAANSVVCYCLGITAVNPAQIQVLFERFISKERNEPPDIDVDFEHER 392

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG +R A   T  + + K+A RDVG+AL     Q+    + +       
Sbjct: 393  REEVIQYIYRKYGRQRAALAATVITYRFKSAFRDVGKALGFSEQQLQYFRRNLDR---RD 449

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                      +             LL+ +++L G  RH S H  G VI    LS+LVP+ 
Sbjct: 450  KEQSWQQQLVQQHPEVTNSVRGQHLLQFTEQLMGTPRHLSQHVGGFVIAADDLSRLVPVE 509

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDD 605
                +D  V Q++   +E  GL+K D L L  LT L+K L  +  R  +   ++ IP +D
Sbjct: 510  NASMTDRTVIQWDKTDLESLGLLKVDVLALGMLTALRKMLALINLRYDQQLTMATIPQED 569

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
               Y  L T  ++GIFQ+ES      L  ++P    D++  +++ RPGPI   +V+    
Sbjct: 570  SRVYQQLQTADSMGIFQIESRAQMNMLPRLKPKTFYDLVIQIAIVRPGPIQGDMVHPFLR 629

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R+ G E++      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM    + 
Sbjct: 630  RRAGLEEVDYPSDEVKSVLERTLGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMASWGQN 689

Query: 724  EM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
                + +++ I+G  + G  +  A  +F  +  F  YGF +SH+A++A ++Y ++W KT+
Sbjct: 690  GHLTRFEDKLINGMLERGYKQEFAERLFRQICGFGQYGFPESHSASFANLAYVSSWFKTY 749

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP-------PSVNTPCVDFKVGDNRI 835
            +P  F    +           +  QDA++  +  +         +      +    D  +
Sbjct: 750  HPAAFYVGLLNSLPMGFYSASQLVQDAQRHGVAFLAADINASDWNYCWLPKEDTNSDETV 809

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L  I+G+  +  +H +    +  F S+ +         L    + +L  A AL    
Sbjct: 810  RMGLRQIQGLSESRIKHTLMQRPEDGFTSMHELRK----SGLRDSDINALARADALKSIA 865

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R Q                 + +++   +F + K          +    +     + +
Sbjct: 866  GHRHQAHWQ-----------SLSMSDQQMPLFENVKDR-----PARQLPAPDEPDNIKAD 909

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     HPL + +            + +    G  + LA +V  +Q+  TR G  +
Sbjct: 910  YESTGLTLGRHPLALLRNNPELKNCVLASDLMTCRSGQVLTLAGLVTCRQRPGTRSG--V 967

Query: 1016 GWVTFSEPAKEYEANFF 1032
             ++T  + +       +
Sbjct: 968  TFLTLEDESGNSNVVVW 984


>gi|300173404|ref|YP_003772570.1| DNA polymerase III subunit alpha [Leuconostoc gasicomitatum LMG
            18811]
 gi|299887783|emb|CBL91751.1| DNA polymerase III alpha subunit [Leuconostoc gasicomitatum LMG
            18811]
          Length = 1115

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 303/1028 (29%), Positives = 506/1028 (49%), Gaps = 47/1028 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQ+ S+YSLL+   ++  I++        AIA+TD N ++ A++F Q A    I+P+
Sbjct: 2    YAPLQILSAYSLLKNPNTIEQIIETAKKRHYQAIALTDINVMYGAVKFYQVAKENNIKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L ++          G     TV  IVL+     GYQ L+ + S         +   
Sbjct: 62   FGVTLQVN----------GLVNTATVFPIVLIAENQTGYQNLMWISSAKMTT----KISE 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L  +        I+    +   I +      +Q  +       K+   +LY+ +    
Sbjct: 108  MTLDVITGHLAGINIIF--PNDSEISQFIASEYTQSVDYWQQLITKIDPKKLYLGINPQL 165

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR--PRV 248
                  + ++V  +  ++  L+A +   +L+ +D     VL A+  +T +        ++
Sbjct: 166  AP--QIQERLVTFSAKNQAKLIALDTVDYLNPDDAFTTQVLKAIETNTKLDDIKLLAQQI 223

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                        ++  ++                  +++         +    +  +  E
Sbjct: 224  GTHVLQDFDEVQIAYLANDALKTAYLNNELLVSKSQVEIVFKQTATLPKFRLPNENQTSE 283

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            N LR+ A  GL  R+    +A       Y +RL  EL +I  + F+ YFLIV D + +A 
Sbjct: 284  NYLRSIAEKGLLERINGRQVAL----DQYEKRLQHELQIIDNLAFNDYFLIVWDIVNFAH 339

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            + NI +G GRGS AGS+ AYAL ITD+DP++F LLFERFLNP R+ MPD DID+  ++RD
Sbjct: 340  QKNIQMGAGRGSAAGSLVAYALRITDVDPIQFGLLFERFLNPQRIQMPDIDIDWPDNKRD 399

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND--PAHP 486
             ++ Y+ +KYG    AQI+TFG+L AK ALRD  R   +    + R+   +P        
Sbjct: 400  LILNYLHDKYGQRNFAQILTFGTLAAKQALRDTARVFGVSQQMMSRISNAVPQGKQGRKV 459

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +    +   +  R       + + LL+++Q +EGL R+ STHAAG+V+   PL   +P+ 
Sbjct: 460  LIQDTLNASNVLRTVLSDVDNGELLLKVAQHIEGLPRNYSTHAAGVVLSSEPLINTLPVQ 519

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDD 605
                 D  +TQF    +E  GL+K D LGL  L++L ++L    ++     D+S IP DD
Sbjct: 520  SGS-DDRLLTQFEKNPVEALGLLKIDILGLSNLSILAQTLYDAKKQLPDHFDISKIPLDD 578

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +T  L     T G+FQ ESSG++  L  ++P   E I+A+ +LYRPGP  NI  +  R+
Sbjct: 579  SKTLALYAKGDTNGVFQFESSGIKNVLRQLKPTTFEHIVAVNALYRPGPSRNIQSFIQRR 638

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G EK+  +   +  +L  T G+I+YQEQVM +A+  +G++L EAD+LR AM KK  E+M
Sbjct: 639  HGHEKVTILDSSLKTILAPTFGIIVYQEQVMLVAETFAGFTLGEADLLRSAMSKKKIEKM 698

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
                E+F+ GA   G     A  IF  + +FA+YGFN+SHA AY+ +S++ A+MK HYPV
Sbjct: 699  TAMHEKFVQGAIDLGHDGEQAEQIFAYIDEFANYGFNRSHAVAYSKLSFELAYMKAHYPV 758

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             F  A +   + + EKI+ +  +A+  NI++ PP++N     +   D ++   L  I+GV
Sbjct: 759  AFFTALLNANLGSPEKIRSYIMEAKLRNIEVSPPNINQSQRFWTADDQKLQMGLTNIRGV 818

Query: 846  GTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
             T     ++     +  F S++ F  R+  K   +  L  LV+AGALD FGY+R +L+ +
Sbjct: 819  RTDFVSAVLAERQENGHFKSIQSFIRRLPDKLRKQDTLIQLVYAGALDAFGYNRSELITA 878

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L ++ + A              F     +   +  ++K      + +  +E+  +G   S
Sbjct: 879  LADLIEAAG-------------FGDFILS---ETKIKKSDDFTLTDKLAHEKEAIGVNLS 922

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            GHPLD Y  ++     +   + +   +   I+   ++ S ++ +T+KG  + ++T S+  
Sbjct: 923  GHPLDTYSALIISKKFEQIADMI--KKDQKIKTIVIIDSIRKTRTKKGEEMAFMTVSDIT 980

Query: 1025 KEYEANFF 1032
                   F
Sbjct: 981  GTIGITVF 988


>gi|241896302|ref|ZP_04783598.1| DNA-directed DNA polymerase III, alpha chain [Weissella
            paramesenteroides ATCC 33313]
 gi|241870463|gb|EER74214.1| DNA-directed DNA polymerase III, alpha chain [Weissella
            paramesenteroides ATCC 33313]
          Length = 1122

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 293/1029 (28%), Positives = 481/1029 (46%), Gaps = 50/1029 (4%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V LQ  +++SLL   ++   ++  +      A+A+TD N L+   +F Q A AA IQPI+
Sbjct: 2    VPLQTMTAFSLLRSPMTPQQLIKAVQDKGYQAVALTDYNVLYGMYDFYQAAQAADIQPIL 61

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G   ++                     ++ LV    GY  L+++ S +   ++      +
Sbjct: 62   GLTAELI-----------GLQSSQSYPVIFLVENQVGYHNLLQISSAINTQNEK-----M 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRH 189
             L  L+   +   I+L   S G +  A    +       L+       D   +++ +   
Sbjct: 106  TLDDLKSYLSGLYIIL--PSIGEL--AVLLGTEPERAMTLVKTVTALADATHVFLGVSL- 160

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                      + +LA      ++A  N L+ +  D  +  V+  +    ++S     +  
Sbjct: 161  -DMREAMLQSIKELAQNTGTRIIANENVLYPNASDQFSAQVIQKLGQGEIISNVGLAQKQ 219

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                    S   +        L + VE     +    V        + K      +   +
Sbjct: 220  AATAYLKESTDWA-NEYNSRGLSDAVENTDWIAAHSYVVLEQSSVTVPKYETPQGQSSSD 278

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L   A  GL  RL          A  Y+ RL  EL +I  + F+ YFLIV D + +A K
Sbjct: 279  YLAELATTGLTNRLHD----MAVDATPYKARLKEELRIINELGFADYFLIVWDVLNYAHK 334

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
             +I  GPGRGS AGS+ AY L ITD+DP+ + LLFERFLNP+R  MPD DID   +RR+E
Sbjct: 335  KSIRTGPGRGSAAGSLVAYVLWITDVDPIAYDLLFERFLNPERHQMPDIDIDIPDNRREE 394

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            ++ Y+   YGHERVAQIITF ++  +A +RDV R   +  +Q+D L K +P         
Sbjct: 395  ILDYLHEHYGHERVAQIITFSTMAQRAVIRDVARVFGLNPTQIDNLSKSMPR--GTASLQ 452

Query: 490  QAIADDSRFREARLADPSVDR-LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +      FR A L  P   + L + + KLEGL R+AS HAAG+V+   PL+  +P+   
Sbjct: 453  ASYESSLPFRNALLDLPVDGQLLYQTALKLEGLPRNASLHAAGVVLSAEPLANYMPVQLG 512

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ--RGVKVDLSLIPFDDH 606
                  VTQ     +E  GL+K DFL L  L +L  ++  + +        ++ +  DD 
Sbjct: 513  D-DGRLVTQLPKGPVEALGLLKMDFLALSNLNILDIAIREIQKIPDHESFSIASVSLDDQ 571

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T G+FQ ES GM+  L  ++PD  EDI+A  +L+RPGP+ NI  +  RK+
Sbjct: 572  ATLRLFQNGLTNGVFQFESGGMKNILRQLRPDSFEDIVAANALFRPGPMQNIPHFVARKH 631

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             +EK       +  +L  T G+I+YQEQVM++A+  +G+SL EAD+LRRAM KK  +++ 
Sbjct: 632  QEEKQDVPDASMAEILAPTYGIIVYQEQVMRVAERFAGFSLGEADLLRRAMSKKDHDKIA 691

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
              + +FI GA      + +A  +F  +  FA YGFN+SHA AY+ +++Q A++K HYP  
Sbjct: 692  AMQSKFIDGAVGRHHDQQVAEQVFSYIETFAQYGFNRSHAVAYSKLAFQLAYIKAHYPAA 751

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGV 845
            F  A +   + + +K+  +  +A+  ++ I+ PS+N     + +     +   LA+I G+
Sbjct: 752  FYKAVLNDSIADHKKVGIYIAEAKLSHVTILRPSLNHSWQGYSMNKQGELQMGLASISGL 811

Query: 846  GTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
                   +++   +   +  L +F  R+ SK      LE L++AGALD FG++R  LL S
Sbjct: 812  RRDFREALIQERQEGGQYRDLTNFIGRLPSKYRKVSQLEPLIYAGALDEFGFNRKTLLGS 871

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +           ++      ++F            + + +    + +   E   LG Y S
Sbjct: 872  MQGYIDAVGLAGES-----ISLFESLT------PKMHEVAEFPLNEKLGYEHEYLGVYLS 920

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            GHP++ Y   + +            +   ++ +   V + ++ +T+KG  + +V   +  
Sbjct: 921  GHPIEPYLAAIPENRRTDIANLAVGM--TSVTVVIYVQNVKKIRTKKGDPMAFVDGIDLT 978

Query: 1025 KEYEANFFP 1033
                   FP
Sbjct: 979  GTLSITIFP 987


>gi|261208961|ref|ZP_05923366.1| DNA polymerase III alpha subunit [Enterococcus faecium TC 6]
 gi|289565227|ref|ZP_06445679.1| DNA polymerase III alpha subunit [Enterococcus faecium D344SRF]
 gi|294615026|ref|ZP_06694915.1| DNA polymerase III subunit alpha [Enterococcus faecium E1636]
 gi|260077000|gb|EEW64722.1| DNA polymerase III alpha subunit [Enterococcus faecium TC 6]
 gi|289163048|gb|EFD10896.1| DNA polymerase III alpha subunit [Enterococcus faecium D344SRF]
 gi|291592157|gb|EFF23777.1| DNA polymerase III subunit alpha [Enterococcus faecium E1636]
          Length = 1104

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 311/1029 (30%), Positives = 502/1029 (48%), Gaps = 57/1029 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++                 ++       GYQ+LI+L SR  + +       
Sbjct: 63   IGLHLSYTYEE-------------KNYGLLAYAKDEIGYQQLIKLSSRKMIQE------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRH 189
                 L E+     +     ++  +  AF  N             + +F    Y+ L  +
Sbjct: 103  --KLELAEMTETDHLAFVVPANHSVSEAF--NKEDNFFGHWQFLLENVFTRNFYIGLIEN 158

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                     +  Q        L A +    L +E+  A +V+  +   + +  ++     
Sbjct: 159  TPDQ---LPEWYQYVIKENYSLCALHPIASLQQEELFALEVMKHIKDGSQIPLENLSASL 215

Query: 250  PDHYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P            +     +A L   V  A+R +  +        + +        K+  
Sbjct: 216  PLTANGYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNGKQAG 275

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR    + +E R+         + ++Y++RLD+EL+VI +M F  YFLIV D + +A 
Sbjct: 276  EYLRELCYSQVERRITN-------YTKEYQERLDYELSVIHQMGFDDYFLIVWDVMAFAH 328

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D   +RR+
Sbjct: 329  RNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPDNRRE 388

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN     ++
Sbjct: 389  EVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLKITLT 448

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                    +  E   A      L + +  LEGL RH STHAAG+VI D+ L +LVP+ R 
Sbjct: 449  QA-YKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLLELVPLQRG 507

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
                     + M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  IP +D +
Sbjct: 508  SDEAFLTQ-YTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLKEIPLNDAK 566

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  RK G
Sbjct: 567  TLLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNIDTFIARKKG 626

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK K+ +D+
Sbjct: 627  KEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKDVLDE 686

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +K  F+SGA + G S+  A  ++E + KFA+YGFN+SHA AY+ + +Q A++K H+P  F
Sbjct: 687  EKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHHPGAF 746

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVG 846
              + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L AIKG+ 
Sbjct: 747  FTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFGLTAIKGIR 806

Query: 847  TTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I+     + PF S++ F  R+D + L   +L+SL   G  D    +R QL+  L
Sbjct: 807  RDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQLMLDL 866

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +   +   +     +    ++           +  E+ +      R + E+  LG Y SG
Sbjct: 867  EGKIQNIVY-----SGGSLDLLGIM------ALKEEEVADYTLEERLKLEEEYLGIYLSG 915

Query: 966  HPLDVYKPILRKMGIKGYEESV-ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            HP         ++ +    + +   +    + L  M+   ++ +T+KG  + +V  ++ +
Sbjct: 916  HP----AEGFDRLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMAFVEGTDSS 971

Query: 1025 KEYEANFFP 1033
             E     FP
Sbjct: 972  GEISVTVFP 980


>gi|227432231|ref|ZP_03914227.1| possible DNA-directed DNA polymerase [Leuconostoc mesenteroides
            subsp. cremoris ATCC 19254]
 gi|227352004|gb|EEJ42234.1| possible DNA-directed DNA polymerase [Leuconostoc mesenteroides
            subsp. cremoris ATCC 19254]
          Length = 1112

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 310/1029 (30%), Positives = 510/1029 (49%), Gaps = 51/1029 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQ+ SSYSLL+   ++  I+         AIA+ D N ++ A+E+ ++    GI+P+
Sbjct: 2    YAPLQILSSYSLLKNPNTIEQIVQTAKTRGYEAIALADVNVMYGAIEWFRQTKKHGIKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L ++          G     T+  +VLL     GYQ L+ L S         Q   
Sbjct: 62   FGLTLMVN----------GLVNTATLFPVVLLAENQVGYQNLMWLSSAKMTSQGDFQWET 111

Query: 131  ICLSWLQEIGTEGL-IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL-YVNLQR 188
            +          +G+ I+    +   + +       +           L  +   ++ +  
Sbjct: 112  MVK------HLDGINIVF--PTDSELVQLISSG-YEEVNNYWQQLLTLVDEHHSFIGINS 162

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                    + ++ Q +      ++A ++  +L+ +D     VL A+  +  +        
Sbjct: 163  QMAP--QIQERLAQFSERTGGHMIALDDIDYLNSDDAFTTQVLKAIDANVKLDDIKILAQ 220

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                ++     +V       E L+              V        +          + 
Sbjct: 221  QQGSHILRDLAVVQQEYQGTEILKTAYINNELLVSKSNVSIEFKDTALPPFETPSGVTDS 280

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L   AV+GL+ RL    ++       Y +RL  EL  I  + FS YFLIV D + +A 
Sbjct: 281  QFLEKIAVSGLKKRLQGHNVSLNL----YEERLQHELKTIEVLGFSDYFLIVWDIVNFAH 336

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            KN+I  GPGRGS AGS+ AY+L ITD+DPL+F+LLFERFLN +R+ MPD DID+   +R+
Sbjct: 337  KNHIQTGPGRGSVAGSLVAYSLQITDVDPLQFNLLFERFLNDERVQMPDIDIDWPPSKRE 396

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP-YSQVDRLCKLIPNDPAHPV 487
            E+  Y+  KYG     QIITFG+L +K ALRDVGR   +P  +       +        V
Sbjct: 397  ELFTYLHQKYGKRNFGQIITFGTLASKQALRDVGRVFGLPTPTLSKLSASIPEGKNGRKV 456

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            S+       + + A     +   LL+ + K+EGL ++ STHAAGIV+   PL Q +P+  
Sbjct: 457  SIDDALKAPQLQNALRDIDNGRLLLQTALKIEGLPKNYSTHAAGIVLSANPLVQTLPVQ- 515

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606
                   +TQF    +E+ GL+K D LGL+ L +L ++L +  +    + D++ I  DD 
Sbjct: 516  SGTEGRLLTQFEKDPVEQLGLLKIDILGLQNLAILSQALYYAQKELPERFDITKIVLDDA 575

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L     T G+FQ ES+G++  L  ++P   E I+A+ +LYRPGP  NI  +  R++
Sbjct: 576  KTLALFAKGDTNGVFQFESAGIKNVLRKLKPATFEHIVAVNALYRPGPAQNIDKFIARRH 635

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            GKE +    P +  +L  T G+I+YQEQVM +A+  +G++L EADVLR AM KK  ++M 
Sbjct: 636  GKEAVTISDPSLKSILALTFGIIVYQEQVMLVAESYAGFTLGEADVLRSAMSKKKVDKMQ 695

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K  E+FI GA KNG  +  A  IF  + +FA+YGFN+SHA AY+ ++++ A++K HYPV 
Sbjct: 696  KLHEQFIKGALKNGHDQEQAELIFSYIDEFANYGFNRSHAVAYSKLAFELAYLKAHYPVA 755

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  A +   +   +K++++  +A+   I ++ P VN     +   +N++   L  I+GV 
Sbjct: 756  FFTALLNANLGEQKKVQQYVSEAKIRGIVVLAPDVNKSYKFWTSIENQLQMGLNNIRGVR 815

Query: 847  TTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            T     ++E    +  F +++ F  R+  K   R VLE LV+AGALD FGY+R +L++++
Sbjct: 816  TDFVTSVLEERQNNGSFQTIQSFVRRLPDKMRKREVLEQLVYAGALDSFGYNRRELIENI 875

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
             ++ + A              F +      ++  ++K+     S R + E+ V+G   SG
Sbjct: 876  ASLIEGAS-------------FGNL---ILEETKIKKYDDFALSDRLKKEKEVIGVNLSG 919

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            HPLD Y   + + G   + +    ++ + + ++ A+V S +Q +T+KG  + +V  S+  
Sbjct: 920  HPLDTYVDFILENG---FSQIGNVVQPSQVEKIIAIVDSIRQIRTKKGDDMAFVKVSDTT 976

Query: 1025 KEYEANFFP 1033
             E     FP
Sbjct: 977  GEISVTIFP 985


>gi|297626724|ref|YP_003688487.1| DNA polymerase III alpha subunit [Propionibacterium freudenreichii
            subsp. shermanii CIRM-BIA1]
 gi|296922489|emb|CBL57062.1| DNA polymerase III alpha subunit [Propionibacterium freudenreichii
            subsp. shermanii CIRM-BIA1]
          Length = 1181

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 286/1080 (26%), Positives = 485/1080 (44%), Gaps = 78/1080 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P+FVHL+V SSYSL  GA     ++   AA     + +TD + L+ A+ F Q    A I 
Sbjct: 2    PAFVHLRVASSYSLQYGASHPEELVAGAAAAGMTMLGLTDRDGLYGAVRFVQACQQANIS 61

Query: 69   PIIGCQLDI--------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            PI+G  L +          +        G      +P +V+L  +  G+  L  LV+  +
Sbjct: 62   PIVGVDLAVELCGVPDGARRVRPVPVKGGSLRDEGLPRVVVLARSKAGWAALCRLVTGAH 121

Query: 121  LLDQGKQSVRICLSWLQEIGTE-GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
                 +           +   + GL +L G  S  + RA   +    A++ L  ++++  
Sbjct: 122  QA-PDRARPVATGQLFGQWAGDGGLSVLLGPDSS-LGRALANHDDHGADRELARWRQVVP 179

Query: 180  D-RLYVNLQRHRGYDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            D R+ + +  H G D      +   +V+ A  H L  V TN       +     DVL A 
Sbjct: 180  DNRIALAVSDHLGRDGEASLPQAVAMVRFADRHRLECVLTNQVRMARADQAPVCDVLDAA 239

Query: 235  AHSTVVSQKDRPRVTPDHYLK---NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
                 ++       T + +LK     + + +  SD     +    +      + +     
Sbjct: 240  RLLQPLTMGRLGLGTGEGWLKPSGQMAAVAARISDGAGRDDRGRRLLADTRVLAEECVLD 299

Query: 292  LPRFI--EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              R I   +       +    LR + +AGL  R                QRLD EL VI 
Sbjct: 300  PKRDIGLGEIHLPGVPDANRRLRERCLAGLPRRYRGNTTM-------VEQRLDAELGVIE 352

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
                + YFL VA  +   +         RGSGAGS+  + L I+ +DP+R+ LL ERFL+
Sbjct: 353  GCNMASYFLTVAGVVDMVRGAG-LRCTARGSGAGSLVNHLLGISGVDPMRYGLLMERFLS 411

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
             +R  +PD D+D    RR ++ R V +++G ++VA +    + +A+ ALRDVG AL +P 
Sbjct: 412  AERDKLPDIDLDVESARRTDIYRMVLDRFGADQVACVAMVETYRARHALRDVGAALSVPP 471

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
             ++D + K  P+  A  V   A+A+    R A + +     +L++ + L+GL RH + H 
Sbjct: 472  GEIDAMAKAFPHIRADQV-RNALAELPELRSAGINEERFGVVLDLVEGLDGLPRHLALHP 530

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
             G++I D+ L    P+     SD P++Q++   +E+ GL+K D LG++  + +  +LD +
Sbjct: 531  CGVIISDKTLYDRSPVQT-SASDFPMSQYDKDDVEEMGLLKLDVLGVRMQSAIAHALDEI 589

Query: 590  AQRGVKVDLSL----IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
                   ++       PFDD E Y L+    TLG FQ+ES G R+ +    P C  DII 
Sbjct: 590  RHTEGPEEVPDLEELEPFDDPEVYELIDHSQTLGCFQIESPGQRELVGKFAPTCFNDIII 649

Query: 646  LVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
             +SL+RPGP+   +   + + + G      +   + P+L ET GVI++ EQV++I   ++
Sbjct: 650  DISLFRPGPVKADMVSPFLDARAGWVSPSYLDERLRPILAETYGVIVFHEQVIRIIAEVT 709

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G  L  AD +RRA+G    +     +E F   A  NG  +  A  I+  L  FA +GF K
Sbjct: 710  GKGLGRADEMRRALGSMSAKP--AVQEWFFKYARLNGYDQGQATRIWAALESFASFGFCK 767

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            +HAA+++V +YQ+AW+K H+P +FLA  +T +     K +   ++AR+ +I ++   VN+
Sbjct: 768  AHAASFSVPTYQSAWLKRHWPAQFLAGILTHDPGMYPK-RLLLEEARRMSISVLGIDVNS 826

Query: 824  PCVDFKVG-------------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
                F                      D  I  SLA + G+       I+   A +P+D 
Sbjct: 827  CSGSFHAEPVEADPQMPAPPAGLPDARDWGIRLSLADVAGITDDMIGSIV---AGQPYDD 883

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGY------------SRMQLLQSLDNIQKYA 912
            L DF +R     ++  V E+L+  G LD                +R  LL +L ++ + A
Sbjct: 884  LSDFFAR---SHVSAPVAENLIMVGGLDSLYGIDPDRPSGAGRVTRRDLLLTLGDLVRDA 940

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
            +   +       ++        +  +        + + R + E  VLG   S H ++ Y+
Sbjct: 941  RAGRRAHGAA-TSLQGTFDFAAAGDVEPSGLPEMSRAERTQAELAVLGMDVSRHIVEFYQ 999

Query: 973  PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +L+ +G     + +       + +A + V+ Q    R G R+ +++  +     +A FF
Sbjct: 1000 EMLQGLGWVPAAQLLDHRNHEEVLVAGVKVATQTPPVRSGRRVVFLSLDDSTGPVDATFF 1059


>gi|186684965|ref|YP_001868161.1| DNA polymerase III subunit alpha [Nostoc punctiforme PCC 73102]
 gi|186467417|gb|ACC83218.1| DNA polymerase III, alpha subunit [Nostoc punctiforme PCC 73102]
          Length = 876

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 298/786 (37%), Positives = 448/786 (56%), Gaps = 43/786 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+  A    AIA+TD   ++ A+E  +   +  I+P
Sbjct: 2   SFVPLHIHSDYSLLDGASQLPELVDQAIALGMKAIALTDHGVMYGAVELIKICRSQNIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ +   D  K   + K         V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62  IIGNEMYVINGDIEKQERRPK------YHQVVLAKNTKGYKNLVKLTTISHLQGVQGKGI 115

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L++   EGLI+ +    G + +A   N    A K    +K +FGD  Y+ 
Sbjct: 116 FSRPCINKDLLKQYH-EGLIVTSACLGGEVPQAILSNRPDAARKVAQWYKDVFGDDYYLE 174

Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR    ++V++A    + ++ATN+S F+S  D EAHD L+ +    ++ +  
Sbjct: 175 IQDHGSQEDRIVNVEIVKIARELGIKIIATNDSHFISCFDVEAHDALLCIQTGKLIIEDK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           R R +   YLK+  EM  +F D    + +   V      +  ++ +  +    I      
Sbjct: 235 RMRYSGTEYLKSGEEMRQLFRDHLPDDVISEAVATTEEVADKVEPYHIMGEPQIPTPPIP 294

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                +    + A  GL  RL     ++      Y++RL++EL +I +M FS YFL+V D
Sbjct: 295 SGHTADTYAEDVAWNGLLERL--NRKSRQEVDSVYKERLEYELKMIQQMGFSKYFLVVWD 352

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           +I++A+ NNIPVGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 353 YIKFARDNNIPVGPGRGSAAGSLVAYAMRITNIDPVHHGLLFERFLNPERKSMPDIDTDF 412

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           C ++RD+VI YV  KYG +RVAQIITF  L +KA L+DV R L +PY + D++ KLIP  
Sbjct: 413 CIEQRDKVIEYVTEKYGADRVAQIITFNRLTSKAVLKDVARVLNIPYGEADKMAKLIPVV 472

Query: 483 PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
              P  L+ +      +  F+E    +P V   L+++ ++EG  +    HAAG+VI D P
Sbjct: 473 RGKPTKLKVMVSDKTPEPEFKEKYDKEPHVRHWLDMAMRIEGTNKTFGVHAAGVVISDEP 532

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
           L ++VP+ ++      +TQ+ M+ +E  GL+K DFLGL+ LTL+QK++D + +       
Sbjct: 533 LDEIVPLQKN-NDGSVITQYFMEDLESMGLLKMDFLGLRNLTLIQKTVDLIQETRGYRVD 591

Query: 599 SLIPFDD--------------------HETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                                       +TY LL      GIFQLESSGMRQ +  ++P 
Sbjct: 592 PDEIPRQERKAQKILAKGEHSSLPKDVQKTYELLEAGELEGIFQLESSGMRQIVRDLKPS 651

Query: 639 CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            IEDI ++++LYRPGP+D   I  + NRK+G+E I   H +++P+L ET G+++YQEQ+M
Sbjct: 652 NIEDISSILALYRPGPLDAGLIPKFINRKHGRENIDYQHTVLEPILDETYGIMVYQEQIM 711

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
           +IAQ ++GYSL +AD+LRRAMGKK   EM KQ+E+F+ GA+KNG+ K +A  +FE + KF
Sbjct: 712 KIAQDMAGYSLGQADLLRRAMGKKKVSEMQKQREKFVDGAAKNGVPKKVADELFEQMLKF 771

Query: 757 ADYGFN 762
           A+Y  +
Sbjct: 772 AEYCLS 777


>gi|254391191|ref|ZP_05006397.1| DNA polymerase III alpha subunit [Streptomyces clavuligerus ATCC
            27064]
 gi|294813650|ref|ZP_06772293.1| DNA polymerase III alpha subunit [Streptomyces clavuligerus ATCC
            27064]
 gi|326441944|ref|ZP_08216678.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC
            27064]
 gi|197704884|gb|EDY50696.1| DNA polymerase III alpha subunit [Streptomyces clavuligerus ATCC
            27064]
 gi|294326249|gb|EFG07892.1| DNA polymerase III alpha subunit [Streptomyces clavuligerus ATCC
            27064]
          Length = 1213

 Score =  522 bits (1345), Expect = e-145,   Method: Composition-based stats.
 Identities = 260/1077 (24%), Positives = 426/1077 (39%), Gaps = 72/1077 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL V + YS   GA     ++ + A      +A+TD + +   + F++ A   G++ +
Sbjct: 4    FAHLHVATGYSARYGASHPRELVARAAERGMEVLAVTDRDGVAGVVRFAKAARGGGVRAV 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVP------SIVLLVSTAEGYQRLIELVSRMYLLDQ 124
             G  + ++     +                    I LL     G+  L  LVS  +    
Sbjct: 64   FGVDMGVEAFVPGREAVVRAPVRGGAYVREPPLRITLLARDPRGWAELCRLVSAAHAR-P 122

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                  I           GL +L G       RA      + A + L  ++ L GD L +
Sbjct: 123  VDGHPVIPREAFTAAADTGLTVLLGPL-SEPARALAAGRDESAARLLTAWRALAGDGLRL 181

Query: 185  NLQRHRGY-----DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
                H             ++ + L     +P+V TN   +   E +   DVL A      
Sbjct: 182  EAVHHGRPGAGPGSLRLAARTLLLGDRLGIPVVLTNAVRYADPEQHRLADVLDAARLLRP 241

Query: 240  VSQ------KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI-- 291
            + +      +   +              +       A     E        +        
Sbjct: 242  LDRDRLDSGERWLKDPAAMRTAAGLIAGAAGLGPERADRLITETGATAEECVLDPGTGLG 301

Query: 292  -LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
               R + +      ++  + +R           A           + R+RL  EL +IA 
Sbjct: 302  LGRRHLPEPWAVGARDAADAVRVLR----GRCAAGLVRRGLDRDPEARRRLAQELALIAE 357

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            +    YFL VA  +   ++  I V   RGSGAGS+  + L I   +PL   LLFERFL+ 
Sbjct: 358  LGLDTYFLTVAQVVADIRERGIRVA-ARGSGAGSMVNHVLGIATANPLDHRLLFERFLSR 416

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
             R  +PD D+D    RR E    +  ++G ERVA      + +A+ ALRD   AL +  +
Sbjct: 417  QRTDLPDIDLDVESARRLEAYDRIIERFGRERVALAAMPETYRARHALRDTALALGIAPA 476

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            + DR+ K  P+  A  ++  A+AD    R    A      LL +++ L+ L R  + H  
Sbjct: 477  EADRMAKAFPHIRARDIT-AALADLPELRGLAAASAPYRLLLTLAEGLDALPRGIAMHPC 535

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G++IGD  L   +P+        P+ Q +   IE  GLIK D LG++T + +  +   + 
Sbjct: 536  GVIIGDASLRARLPVQPTPTGGYPMVQADKHDIEDLGLIKLDVLGVRTQSAMAHATAEIE 595

Query: 591  ----QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
                +R    D   +P DD   + ++    TLG+FQLES G    L  MQP    D+IA 
Sbjct: 596  RVTGRRIDLDDPRQVPLDDPFAFRMIQASDTLGMFQLESPGQMDLLARMQPRDPRDVIAD 655

Query: 647  VSLYRPGPIDNIVVYNNR-KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +SL+RPGP+   +                HP + P+L +T GV+I+ EQ+++I ++L+G 
Sbjct: 656  ISLFRPGPVAGGMPERYVAARHGGPPSYPHPDLVPVLSDTYGVVIWHEQIIEILRVLTGC 715

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
                AD +RRA+G + +      +E F   A+  G S  +   ++  +  F  YGF ++H
Sbjct: 716  DRGYADHVRRALGDRARLP--GIREWFHRRAAARGYSPAVRDEVWGTVESFGAYGFCRAH 773

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A A+AV + QTAW+K H+P    A  +  +     K +    DAR+ +I ++P  +N   
Sbjct: 774  AVAFAVPALQTAWLKAHHPAALYAGLLEHDPGMWPK-RVIVADARRHHIAVLPVDINRSR 832

Query: 826  VDFKVGD-----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                V         +  +L+ + G+       I    A +P+ SL D   R       R 
Sbjct: 833  PTHTVERAPDGTWGVRLALSDVHGISRAEVTRIA---AGQPYISLTDLWRRAHP---TRP 886

Query: 881  VLESLVFAGALDCF---GYSRMQLLQSLDNIQKYA------------QWVEKNRTNKHEN 925
              E L   GAL      G +R  LL  +  + +              Q   + RT     
Sbjct: 887  TAERLADIGALSPLAGDGVTRRDLLLRIAELHRDHQRHREHRRHPGHQGGHRGRTAGDGQ 946

Query: 926  I-FAHEKGTFSDKIT---------LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            + F +      D             +           + E RVLG   S H +D  + +L
Sbjct: 947  LTFENVPDNVPDNAPNNVPYGENGPDGLPEMTGREALDAELRVLGIDVSRHLMDHQRRLL 1006

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            R++G            G+++ +A +  + Q      G RI +VT  + +   +  FF
Sbjct: 1007 RELGATDARRLGGLRAGDSVLVAGVRAATQTPPIPSGKRIIFVTLDDGSGLVDLAFF 1063


>gi|294619116|ref|ZP_06698611.1| DNA polymerase III subunit alpha [Enterococcus faecium E1679]
 gi|291594777|gb|EFF26159.1| DNA polymerase III subunit alpha [Enterococcus faecium E1679]
          Length = 1104

 Score =  522 bits (1345), Expect = e-145,   Method: Composition-based stats.
 Identities = 311/1029 (30%), Positives = 501/1029 (48%), Gaps = 57/1029 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3    FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  L    ++                 ++       GYQ+LI+L SR  + +       
Sbjct: 63   IGLHLSYTYEE-------------KNYGLLAYAKDEIGYQQLIKLSSRKMIQE------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRH 189
                 L E+     +     ++  +  AF  N             + +F    Y+ L  +
Sbjct: 103  --KLELAEMTETDHLAFVVPANHSVSEAF--NKEDNFFGHWQFLLENVFTRNFYIGLIEN 158

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                     +  Q        L A +    L +E+  A +V+  +   + +  ++     
Sbjct: 159  TPDQ---LPEWYQYVIKENYSLCALHPIASLQQEELFALEVMKHIKDGSQIPLENLSASL 215

Query: 250  PDHYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            P            +     +A L   V  A+R +  +        + +        K+  
Sbjct: 216  PLTANGYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQFHQKLLPHYPVPNGKQAG 275

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR    + +E R+         + ++Y++RLD+EL+VI +M F  YFLIV D + +A 
Sbjct: 276  EYLRELCYSQVERRITN-------YTKEYQERLDYELSVIHQMGFDDYFLIVWDVMAFAH 328

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP+R +MPD D+D   +RR+
Sbjct: 329  RNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNPERFTMPDIDLDIPDNRRE 388

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S+ +R  K IPN     + 
Sbjct: 389  EVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQSEANRWSKAIPNQLKITLP 448

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                    +  E   A      L + +  LEGL RH STHAAG+VI D+ L +LVP+ R 
Sbjct: 449  QA-YKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAAGVVISDKNLLELVPLQRG 507

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
                     + M  +E  GL+K DFLGL+ L+++  +L  + +  G ++ L  IP +D +
Sbjct: 508  SDEAFLTQ-YTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVKRVEGYEIRLKEIPLNDAK 566

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  RK G
Sbjct: 567  TLLLFQRGETSGVFQFESAGIRNVLRRLGPENIEDIAAVNALYRPGPMQNIDTFIARKKG 626

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KE I      + P+LK T GVI+YQEQ+MQIA  ++G++L ++D+LRRA+ KK K+ +D+
Sbjct: 627  KEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQSDILRRAVSKKKKDVLDE 686

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            +K  F+SGA + G S+  A  ++E + KFA+YGFN+SHA AY+ + +Q A++K H+P  F
Sbjct: 687  EKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAYSFVGFQMAYLKAHHPGAF 746

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVG 846
              + M     N  K+K++  +AR+  +++  PS+N     F+ V    I + L AIKG+ 
Sbjct: 747  FTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFELVNKEEIRFGLTAIKGIR 806

Query: 847  TTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I+     + PF S++ F  R+D + L   +L+SL   G  D    +R QL+  L
Sbjct: 807  RDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTAVGVFDELSPNRKQLMLDL 866

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +   +   +     +    ++           +  E+ +      R + E+  LG Y SG
Sbjct: 867  EGKIQNIVY-----SGGSLDLLGIM------ALKEEEVADYTLEERLKLEEEYLGIYLSG 915

Query: 966  HPLDVYKPILRKMGIKGYEESV-ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            HP         ++ +    + +   +    + L  M+   ++ +T+KG  + +V  ++ +
Sbjct: 916  HP----AEGFDRLRLAKQVQLITDIVPNQPVNLLVMIKEVREIRTKKGELMAFVEGTDSS 971

Query: 1025 KEYEANFFP 1033
             E     FP
Sbjct: 972  GEISVTVFP 980


>gi|315658035|ref|ZP_07910908.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus
            lugdunensis M23590]
 gi|315496925|gb|EFU85247.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus
            lugdunensis M23590]
          Length = 1067

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 329/1024 (32%), Positives = 522/1024 (50%), Gaps = 81/1024 (7%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL +H+SY LL  +L + +++ K +     A+AITDTN L+   +F     +A I+PI 
Sbjct: 6    VHLNIHTSYDLLNSSLKIEDVVAKASKQGYTALAITDTNVLYGYPKFYDACVSANIKPIF 65

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  + I    +                 VL     EG   + +L S + + D+      +
Sbjct: 66   GMTVYITDGLSSVEA-------------VLYALNNEGLTAMYQLSSAIKMKDKS----LV 108

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               W+ +  +   I+                  +  E++     + F +  ++ +     
Sbjct: 109  PFEWITKYQSNIAIV-----------------FKQVEQKHEHILEKFLNDEFIYVNSDSK 151

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D               L  V    + +L++ D +    L A+  +  +   +      +
Sbjct: 152  ND-------------FGLLRVWLRTARYLNDNDADTIAALQAIKLNEKLDLVNEMDNLNE 198

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            H+L+         S    A   T  +A +C+  +Q H  +LP+F   +        +  L
Sbjct: 199  HFLEASELDELTVSQEEWA--QTQALAEKCNAEIQYHQSLLPQFKTPD----NSSSKAYL 252

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
              + V  L+              ++Y  RL+ E  +I  M F  YFLIV+D I +AK ++
Sbjct: 253  WKQLVQRLKTLQLNQ--------KNYIDRLNHEFKIITNMGFEDYFLIVSDLIHYAKTHD 304

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            + VGPGRGS AGS+ +Y L IT IDP++++LLFERFLNP+R++MPD DIDF   RR+ VI
Sbjct: 305  VMVGPGRGSSAGSLVSYLLGITTIDPIKYNLLFERFLNPERVTMPDIDIDFEDTRRERVI 364

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             YVQ KYG   V+ I+TFG L A+A  RDVGR +      +  + KLIP+     ++   
Sbjct: 365  EYVQQKYGEYHVSGIVTFGHLLARAVARDVGRIMGFDEITLAEISKLIPHQLGITLNQAY 424

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
              D+ +F++    +   ++  E+ +KLEGL RH STHAAGI+I D+PL   VP+      
Sbjct: 425  --DNDKFKDFVHRNYRHEKWFELCKKLEGLPRHTSTHAAGIIINDQPLFNFVPLTIGDTG 482

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
               +TQ+ M   E+ GL+K DFLGL+ L+++ + +  +     V++D+  IPFDD + + 
Sbjct: 483  --LLTQWTMTEAERLGLLKIDFLGLRNLSIIHQIVTQVKYDLNVEIDIEAIPFDDPKVFA 540

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL+   T GIFQLES G+R  L+ ++P   EDI+A+ SLYRPGP++ I  Y  R++   K
Sbjct: 541  LLSQGETTGIFQLESEGVRHVLQRLKPQHFEDIVAVTSLYRPGPMEEIPTYITRRHEPSK 600

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +HP ++P+LK T GVIIYQEQ+MQIA   +G+S  EAD+LRRAM KK +  ++ +++
Sbjct: 601  VAYLHPDLEPILKSTYGVIIYQEQIMQIASRFAGFSYGEADILRRAMSKKNRAVLENERQ 660

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A 
Sbjct: 661  HFVEGAQRNGYEEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFYAN 720

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + N +K     ++A+   I I+PP +N     +K     IY SL AIKGVG  + 
Sbjct: 721  ILSNVVGNEQKTAAIIEEAKIQGIAILPPHINHSHWFYKATPQGIYLSLGAIKGVGYQSV 780

Query: 851  RHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            + I+    +   F S +DF  R+  +   R++LESL+  GA D  G++R   LQ +D   
Sbjct: 781  KTIVNNRKEQGNFKSFKDFSKRIPKRIKTRKLLESLILVGAFDSLGHNRATSLQMIDEAV 840

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 V         +IF     T  D+I  E+ +  N       E+  LGFY S HP++
Sbjct: 841  DDITHVG-------LDIFDIAGMTPKDEI--EEQAELNDLQLSMYEKEYLGFYISKHPVE 891

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                  + +GI              I +       +Q +T+KG ++ +V  ++  K  + 
Sbjct: 892  KMFHRKQFLGIYT---LANAANHQPILV--QFDQIKQIRTKKGQQMAFVVVNDGIKVIDG 946

Query: 1030 NFFP 1033
              FP
Sbjct: 947  VIFP 950


>gi|21702583|gb|AAM75980.1|AF481102_16 DNA polymerase alpha subunit [Candidatus Tremblaya princeps]
          Length = 1083

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 349/1008 (34%), Positives = 542/1008 (53%), Gaps = 46/1008 (4%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
             FVHL++HS YS+ +G + + + ++   AD Q ++A+TD NN+F A++F + A  +G++P
Sbjct: 17   DFVHLRMHSEYSMHDGMVRVEDAVNAARADMQCSLALTDLNNVFGAVKFYKAAVRSGVKP 76

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+GC L +            +  F    S++ L  +  GY+ +  +++  +         
Sbjct: 77   IVGCHLLL------------RGAFGDTSSVLALARSGGGYRNMCRILTAAWSDAATCVEA 124

Query: 130  RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            R+ + WL       +G+++L+G   GPI R     +   A + +  +  +     Y+ LQ
Sbjct: 125  RVDMRWLAGSPRILKGIVVLSGALDGPIGRHIIEGNYSAARRSVDDWLTMTQGSFYLELQ 184

Query: 188  R--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R  H G + Y   + ++L+    +P+VAT+   F++  DY  H V   +A  T+ S+   
Sbjct: 185  RSGHSGTETYV-HRALELSMYSMVPVVATHPIQFIAPSDYPLHCVRCGMAAGTLGSRATG 243

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               T + + K+R  M  IF D+P A+ NT  IAR C+  + +     P F          
Sbjct: 244  M-FTREQHFKSRESMSRIFRDIPSAISNTCAIARMCNLDMDIGRLRRPVFAVCSPC---- 298

Query: 306  EEENELRNKAVAGLEVRLAQG-AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             E + L     +GL  R+  G         ++Y  R+  E  ++A M F GYFLIV+DF+
Sbjct: 299  NEASALACTLGSGLRSRIMDGRMPRFTGTRREYAARIREEYRIVAGMGFCGYFLIVSDFV 358

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
             WA+   IPVG GRGSGAGS+ AY L ITDIDP++  LLFERFLNP+R++MPD DIDFCQ
Sbjct: 359  GWARARGIPVGSGRGSGAGSLMAYVLGITDIDPIQHGLLFERFLNPERVTMPDLDIDFCQ 418

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + RD V++YV+ +Y +  VAQI TFG++ A+A++R+  RA+ + Y+  D + +L+P  P 
Sbjct: 419  EGRDRVVQYVRRRYSNGSVAQITTFGTMAARASVREAARAMGVSYTLADSIARLVPIRPG 478

Query: 485  HPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              V++   + +    R    ++  V  L++ + ++EGL R+ + HA GI+I    +  L 
Sbjct: 479  ARVTIPNSLKEVRMLRSRYASEGDVRLLIDTASRMEGLVRNMAVHAGGIIISPADIQDLC 538

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ--KSLDFLAQRGVKVDLSLI 601
            P+Y+   S +PV+Q +    E  GL+KFDFLGL TLT+L           R V       
Sbjct: 539  PLYQQAGSIVPVSQLDKDDAESLGLVKFDFLGLTTLTILSCAARCVVGTGRAVSQHSLCG 598

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P  D  T+ LL    T+ +FQLE  GM++AL    PD + DIIAL+SLYRPGP+  +  Y
Sbjct: 599  PPCDSATFGLLQAADTVAVFQLEGIGMQEALRITVPDRLGDIIALISLYRPGPMRLVRSY 658

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK+G E    +   + P+L ET GV++YQEQVM+IAQ + GY+  EAD+LRR M +K 
Sbjct: 659  CRRKHGVEAAFVVDERLLPILGETYGVMVYQEQVMRIAQAMGGYTPGEADLLRRVMSRKQ 718

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              +M   +  F++GAS+ GI  + AV +FE + KFA YGFNKSHAAAYA +SYQTAW+K 
Sbjct: 719  PRDMAAHRISFVNGASRLGIGGSSAVAVFEHIKKFASYGFNKSHAAAYATMSYQTAWVKA 778

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-------GDNR 834
             +PV+F+AA+M+  + + ++++    D  +  + +  P VN P   F         G   
Sbjct: 779  RHPVDFMAANMSGSLRDYDRLRLLRLDCARRGVPLRAPDVNRPSYRFTPISCYGSEGHGY 838

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I Y L A+K  G    R I     D+PF SL DF +R++S+ + R  +E L+ AGA DC 
Sbjct: 839  IVYGLGAVKCGGEAVVRDIARCREDRPFRSLYDFLARINSRIVKRSAVECLIKAGAFDCK 898

Query: 895  -GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
             G +R  +L  L           ++R      ++  ++ T +    L   S    +   +
Sbjct: 899  PGGARATMLAVLPAAM-------RDRHEPTALLWRIQQPTSAAC--LIAASAWRFA--VQ 947

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGNNIRLAAM 1000
            +E   LG+YFS HP    +   R +   G +           + L  +
Sbjct: 948  HESEALGYYFSIHPFSRCRGAARSIAAMGIDAIRRRARPHATLTLCGV 995


>gi|167648416|ref|YP_001686079.1| DNA polymerase III subunit alpha [Caulobacter sp. K31]
 gi|167350846|gb|ABZ73581.1| DNA polymerase III, alpha subunit [Caulobacter sp. K31]
          Length = 1117

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 246/1098 (22%), Positives = 436/1098 (39%), Gaps = 127/1098 (11%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            K+ ++  LQ  +++S L GA     ++    A    A+ + D N+L   +     A    
Sbjct: 2    KTHAYAELQATTNFSFLRGASHAQELMLTGQALGLTAVGVADRNSLAGVVRAWTAAKDLK 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            I+ + GC+LD                    PS++   S  E + RL  L++       GK
Sbjct: 62   IRALTGCRLDF---------------MDGAPSLLCYPSDREAFGRLTRLLTVGQRR-AGK 105

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +      E   EG + L    +            +  E  L         R+++  
Sbjct: 106  GECHLSWKDFLE-HAEGQLALIVPPA---------RLDEAFEADLARIAGELRGRVWLAA 155

Query: 187  QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KD 244
             R +   D  R S++  LA     P+VATN+ L+   E     DV+  +     ++Q   
Sbjct: 156  SRAYAAQDLKRLSRLADLAREARAPMVATNDVLYHGPERRPLQDVMTCIREGCTITQAGF 215

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R     + ++K  +EM  +F   P+A+E T+EI  R  F L       P           
Sbjct: 216  RLEANAERHIKTPAEMARLFERWPQAVERTIEIVERIGFDLGDLKEQYPDEPVPPG---- 271

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            K     L +    G   R   G       +     +L  EL +IA+M +  YF+ V D +
Sbjct: 272  KTAMQHLTDLTWQGAAWRYPNGV------SPKVADQLREELRLIAKMDYPNYFITVHDIV 325

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
              A++  I    GRGS A S   + L +T IDP    LLF RF++ +R   PD D+DF  
Sbjct: 326  HKAREMGIL-CQGRGSAANSSVCFCLGVTAIDPTEHRLLFTRFISENRGEPPDIDVDFEH 384

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EV++YV  +YG E  A   T    + ++A+RDVG+AL +       L   +     
Sbjct: 385  ERREEVMQYVYKRYGREYAAICCTVIHYRPRSAIRDVGKALGLTEDITAILANTVWGSWG 444

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  + I            +P + R + ++ +L    RH S H  G V+  R L + VP
Sbjct: 445  DGLPDEHIKQT----GLDPNNPQIARAIALATELLQHPRHLSQHVGGFVLTKRRLDETVP 500

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--DLSLIP 602
            +      D    +++   I+   L+K D L L  LT +Q++   L     +   DL+ +P
Sbjct: 501  IGNAAMKDRTFIEWDKDDIDSLKLMKVDILALGMLTAIQRAFGMLRADHGQPITDLADVP 560

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +    Y +L+   ++G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V+ 
Sbjct: 561  VEVKGVYDMLSVADSVGVFQVESRAQMSMLPRLKPNKFYDLVIEVAIVRPGPIQGDMVHP 620

Query: 663  NRKNG----------KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +                      +  +L  T GV ++QEQ M +A   + ++  EAD 
Sbjct: 621  YLRRRQGLEKAEWPAPSPEHGHKDELREILGNTFGVPLFQEQAMSLAIEAAKFTPDEADG 680

Query: 713  LRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LR+AM       +  + +++F+ G  + G  +  A   F+ +  F  YGF +SHAA++A 
Sbjct: 681  LRKAMATFKNLGDPGEYRDKFVEGMVRRGYERDFATRCFKQIEGFGSYGFPESHAASFAK 740

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            + Y +AW+K  +P  F AA +  +     +  +  +DAR+  +++  P V     D  + 
Sbjct: 741  LVYISAWIKWAWPDVFCAALINSQPMGFYQPAQLVRDAREHGVEVRAPDVLMSDWDCTLE 800

Query: 832  DNRI-------------YYSL---AAIKGVGTTTARHIMEASADKPFDSLED-------- 867
               I                      + G   ++   ++    D+ F    D        
Sbjct: 801  GVSIAQTSTVIPDEAQRRSGTDPERRVSGGPGSSRSALV--RDDRAFQPASDKLFNPDTR 858

Query: 868  -FCS--RVDSKKL------------------------------NRRVLESLVFAGALDCF 894
             F    R+  +++                              ++R LE L  A A    
Sbjct: 859  PFWKAVRLGLRQIKGLKEDDAKLIEEVRAEGARTPADFARAGVSQRGLELLAEADAFASA 918

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
            G +R   L ++  +        + + +    + A     F   + L   ++     +   
Sbjct: 919  GLTRRDALWAVKGL------KGEAKVDSQAPLLAGLP-LFDTAVALPTMALP---QQVAE 968

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            + R        HPL  ++P+L ++ +   E       G  + +  +V+ +Q+  T KG  
Sbjct: 969  DYRTTSLSLKAHPLRFFRPMLDQLNVTPAERLKGVRNGRKVSVGGLVLIRQRPGTAKG-- 1026

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + ++T  +      A  +
Sbjct: 1027 VVFLTLEDETGVANAVVW 1044


>gi|315639541|ref|ZP_07894683.1| DNA-directed DNA polymerase III alpha subunit [Enterococcus italicus
            DSM 15952]
 gi|315484691|gb|EFU75145.1| DNA-directed DNA polymerase III alpha subunit [Enterococcus italicus
            DSM 15952]
          Length = 1101

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 317/1032 (30%), Positives = 511/1032 (49%), Gaps = 65/1032 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            ++ L   S+YSLLE  + L   + K       A+ + D N L   +EF Q    A I+PI
Sbjct: 2    YIPLATKSAYSLLESTIRLPQYVQKAHEYHYEALGLMDHNTLHGTIEFYQLCQKAKIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  LDI   D             T      +  +  GYQ+L+EL ++  L +    S  
Sbjct: 62   IGLLLDISFAD------------ETSYPFYFVAKSFAGYQQLMELSTKKMLGE----SPI 105

Query: 131  ICLSWLQEIGTEGLIMLTG--GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            +     +E     + +L     +      A   N           +  +    ++  +  
Sbjct: 106  MQ----EEQRMTDVAILIPKETAQTTAFSALLENKHS--------WLSMNVTDVFFCVTP 153

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +    S   ++     +  +A   ++ + + +  A +V+  +   +    +     
Sbjct: 154  TNLGEEDFYSYQKKM-KDLGMRPIACQETVAMDKSENAAIEVVAHIKDGSTFDWRSSAVN 212

Query: 249  TPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 +     EM   F   PEALE   ++   C   L +H  +LP++     +      
Sbjct: 213  EKAIGVLRPAEEMDQAFQKCPEALEELAKLVVLCQLELPLHQVLLPKYPVPNGE----SA 268

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++ L      GL       A  +  H   Y++RLD+EL +I +M F  YFLIV D + +A
Sbjct: 269  KDYLAYLCKQGL-------ASRQIAHTSTYQRRLDYELRIIHQMGFDDYFLIVWDIMNFA 321

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             + NI  G GRGS AGS+ +Y L+IT+IDP+   LLFERFLNP+R +MPD D+D   +RR
Sbjct: 322  HEQNIVTGAGRGSAAGSLVSYLLSITEIDPIDADLLFERFLNPERYTMPDIDLDIPDNRR 381

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            D ++ YV+ KYG + VAQI TFG++ AK  LRDV R   +  S+++R  K IPN     +
Sbjct: 382  DVILHYVKEKYGADYVAQIATFGTMAAKMVLRDVARTFGLSQSEMNRWSKAIPNQLKITL 441

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                       RE    +     L +I+ +LEGL RH STHAAG+VI D  L +LVP+  
Sbjct: 442  KEA-YQTSKSLRELVEMNEKNRLLFQIASQLEGLPRHVSTHAAGVVISDTNLRKLVPLQ- 499

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDH 606
                +L +TQF M  +E  GL+K DFLGL+ L+++  +L     Q       ++IP +D 
Sbjct: 500  AGSGELYLTQFAMNDVETVGLLKMDFLGLRNLSIIDDTLKGIYYQMKQCFTQAMIPKNDK 559

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +TY L     T+G+FQ ES+G+R+ L  ++P  +E++  + +LYRPGP+  I  Y  RKN
Sbjct: 560  QTYELFQRGETVGVFQFESAGIRKVLRDVRPANLEELAVVNALYRPGPMKMIDAYVKRKN 619

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G EK   +   + P+L+ T G+++YQEQVMQ+A ++ G+SL EAD+LRRA+ KK +  +D
Sbjct: 620  GLEKSTYLDQSLAPILRSTYGIMVYQEQVMQVASMMGGFSLGEADILRRAISKKKRAVLD 679

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +Q+E+F  GA   G  + IA   ++ + +FADYGFN+SHA AY+ I+YQ A++KTHYP+ 
Sbjct: 680  EQREKFYQGAQTKGYDRKIAEATYQYIERFADYGFNRSHAFAYSEIAYQMAYLKTHYPLP 739

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGV 845
            F  A +     N  K++++  +A++  +  + PS+N     F +     I + LA+IKG+
Sbjct: 740  FYRALLQSVQGNASKMREYISEAKRQGVVFLAPSINASYSGFSIESSEGIRFGLASIKGL 799

Query: 846  GTTTARHIMEASAD-KPFDSLEDFCSR---VDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
                 + ++    +  PF S++ F  R   ++ K + + +LE LV  GA D    +R QL
Sbjct: 800  RKDFTQAVIRERKERGPFKSMDHFLLRLNQLNPKYIKKEILEPLVEVGAFDTIEPNRKQL 859

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            LQ L+      +      +    ++ A         +   +        +   E+ +LG 
Sbjct: 860  LQELE-----GKRQNLAFSGGSMDMLALMP------LKTTEVVDFTLPEKLTFEENLLGV 908

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            Y SGHP+  Y  + RK       + V    G  + L   + + ++ +T+KG ++ ++   
Sbjct: 909  YVSGHPIQEYDDLRRKWQTTQLSDLVP---GTTVLLLGYLKNIREIRTKKGEKMAFLDIM 965

Query: 1022 EPAKEYEANFFP 1033
            +   E     FP
Sbjct: 966  DLGAERSVTLFP 977


>gi|330953443|gb|EGH53703.1| error-prone DNA polymerase [Pseudomonas syringae Cit 7]
          Length = 994

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 263/1004 (26%), Positives = 446/1004 (44%), Gaps = 80/1004 (7%)

Query: 44   IAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
            +AI D   L   +   Q + + G+  IIG ++ I+                  P  VLLV
Sbjct: 1    MAIPDECTLAGIVRSWQASISTGLPLIIGSEMHIENG----------------PKAVLLV 44

Query: 104  STAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
             +  GY+ L +L++        K   R+      E   +GL+ +                
Sbjct: 45   ESQTGYEALCKLITVARRR-ARKGEYRLLREDF-EPAPDGLLAIWLPD--------IEGD 94

Query: 164  SQVAEKRLLTFKKLFGDRLYVNLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
            +Q         ++ F +RL++ ++ HRG  D  R + ++ LA    +P VA+ +    + 
Sbjct: 95   AQACLAHGRWLRERFAERLWLGVELHRGADDEQRLADLLALAQLLGIPAVASGDVHMHAR 154

Query: 223  EDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
                  D + A+ H T V++         + +L+    +   + D   A   +V IARRC
Sbjct: 155  GRRALQDTMTAIRHHTTVAEAGHLLFANGERHLRPLDALAEHYPDWLLA--ESVRIARRC 212

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            +F L+      P  +  +     +   + LR     G+  R  +G           R ++
Sbjct: 213  TFDLKQLKYEYPHELVPKG----QTPTSWLRELTERGVRKRWPKGL------TPATRAQV 262

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + EL +IA  KF  YFL V D +++A+  +I    GRGS A S   YAL IT+++P + +
Sbjct: 263  EKELALIAEKKFDSYFLTVHDIVEFARSQHIL-CQGRGSAANSAVCYALGITELNPEKSN 321

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERF++ +R   PD D+DF  DRR+EVI+Y+  +YG  R A      +     A+RDV
Sbjct: 322  LLFERFISRERNEPPDIDVDFEHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGAMRDV 381

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
             + L +P  Q++ L +          S + + +           P + R+L ++ +L G 
Sbjct: 382  AKVLGLPPDQINALAEAFSRWSDSLPSPERLREY----GFDADTPILKRVLALTGELIGF 437

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             RH S H  G VI + PL  LVP+     +D  + Q++   ++  GL+K D L L  L+ 
Sbjct: 438  PRHLSQHPGGFVISEHPLETLVPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSA 497

Query: 582  LQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            L+++ D +   RG +  L+ +P DD +TY +++   T+G+FQ+ES      L  ++P+  
Sbjct: 498  LRRTFDLVHLHRGKRWTLASLPGDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKF 557

Query: 641  EDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
             D++  V++ RPGPI   +V+    R+NG+E +    P ++ + K T GV ++QEQVM++
Sbjct: 558  YDLVIEVAIVRPGPIQGDMVHPYLRRRNGEEAVTYP-PKLESVFKRTLGVPLFQEQVMEV 616

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            A L + Y+  EAD LRRAM    +    +  +ER  +G  K G     A  IFE +  F 
Sbjct: 617  AILAADYTPGEADELRRAMAAWKRHGGLEPHRERLRTGMLKKGYEADFADRIFEQIKGFG 676

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             YGF +SHAA++A+++Y + W+K H P  F  A +           +  QDAR+ +I+I 
Sbjct: 677  SYGFPESHAASFALLTYASCWLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIR 736

Query: 818  PPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
            P  V     D  +          +  I   L  ++G     A  I  A A +PF    D 
Sbjct: 737  PVDVRYSDWDCSLEPLDHPDRTRNLAIRLGLRMVRGFREEDALRIEVARAKRPFVDATDL 796

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              R +   L+ R  E+L  +GAL      R +    +  +                 +F 
Sbjct: 797  TLRAE---LDSRAAEALADSGALRGLIGHRHRARWEVAGV------------EAQRPLFD 841

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
                  +  I      +   +     +   LG     HPL + +  L     +  ++ + 
Sbjct: 842  DLPSEETQVI----LPLPTVAEDLVADYTTLGTTLGPHPLALLRRQLAAKRFRSSQDLLH 897

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                  + +A +V+ +Q+  T  G  + +VT  +         +
Sbjct: 898  LENDRTLSVAGLVIGRQRPGTASG--VTFVTLEDEFGMVNVVVW 939


>gi|84496189|ref|ZP_00995043.1| putative DNA polymerase III alpha subunit [Janibacter sp. HTCC2649]
 gi|84382957|gb|EAP98838.1| putative DNA polymerase III alpha subunit [Janibacter sp. HTCC2649]
          Length = 1282

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 285/1159 (24%), Positives = 474/1159 (40%), Gaps = 151/1159 (13%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            +P FVHL V S YS+  GA +  +++++ A D QPA+A+TD + L+ A+ F+     AGI
Sbjct: 2    NPDFVHLHVASGYSMRFGASTPEDLVERAADDGQPALALTDRDGLYGAVRFAMACGKAGI 61

Query: 68   QPIIGCQLDIDMQDNLKMT--------NQGKTPFPTVPSIVLLVSTAE-------GYQRL 112
             PI+G  L +  +                G      +P + +L            G+  L
Sbjct: 62   APILGVDLAVGAEPVPGRPVRKVRTPVRGGAVVDQRLPRVTVLARGRAAGTGRGLGWAAL 121

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEG----------------------------- 143
              LV+  +L  + +         L      G                             
Sbjct: 122  CRLVTDTHLRGE-RGQPVTLPDLLARWCRGGDPSSTTDFVPRTDNSLALAVRAGHEVEEP 180

Query: 144  --LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRHRGYD-----RY 195
              L +L G     + RA        A   L  ++ +   D L + +  + G +     R 
Sbjct: 181  SRLRVLLG-PDSDVGRALLARRPTEARALLERWRAILPPDALAIEIVGNGGPEGTPGSRV 239

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
                ++ LA    +P + T        +     D+L A     V+  +   RVT   +L 
Sbjct: 240  HARHLLGLADEARVPAILTAAVRHADRDGVRTVDILDAARRLVVLDSRHLDRVTDAGHLA 299

Query: 256  NRSEMV----SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD------IQK 305
               EM      +  D   A +            +      L        +          
Sbjct: 300  TSEEMWLRALEVTGDNGRAAQLIGATLALADECVLDARADLGIGAVHLPEPSILGIEAGV 359

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            +    L  +  A +  R      A  +       RLD EL VIA + +  YFL VA+   
Sbjct: 360  DPHQVLTERCRAAVNGRFPALGDAARHT---VLSRLDDELRVIADLGYPTYFLTVAEVTD 416

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
              K   + V   RGSGAGS+  Y L I+ +DP+R  LL ERF +P R  +PD DID    
Sbjct: 417  LIKARGVRVA-ARGSGAGSLVNYLLGISGVDPIRHDLLMERFCSPLRAELPDIDIDVESA 475

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR E+   + +++G ERV  +    + + + A+RDVG AL MP  ++D + K  P+  A 
Sbjct: 476  RRTEIYEAILDRFGGERVTCVSMMDTYKVRHAVRDVGAALGMPPIEIDEIAKAFPHIRAK 535

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                 AIAD    R   L  P ++   E+ ++L+GL RH + H  G+V+ +  L    P+
Sbjct: 536  DA-RSAIADLPELRSRGLDAPRLNTFFELVERLDGLPRHIALHPCGVVLSNAGLLDRTPV 594

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----RGVKVDLSLI 601
                    P++ F+   +E  GL+K D LG++  + +  ++  + +         D + +
Sbjct: 595  E-ASWLGFPMSHFDKDDVETLGLLKLDVLGIRMQSAMAHAVAEVRRVDGVEVDLDDETQV 653

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV-- 659
            P +D  TY L+ +  TLG FQ+ES G R+ +    P+   D+I  +SL+RPGP+ + +  
Sbjct: 654  PLEDPATYRLIRSTHTLGCFQIESPGQRELIGKFGPERFGDLIIDISLFRPGPVKSDMIR 713

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +   ++G  K   +HP + P L ET+GV+++ EQV++I    +G +L++AD +RR MG 
Sbjct: 714  PFLESRHGWSKPQLLHPTLVPALAETEGVVVFHEQVLRIVAETTGVTLAQADEVRRTMGS 773

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
               +  ++ +  +   A   G +      I+ +L  FA +GF K+HAAA+A+ +Y +AW+
Sbjct: 774  --PKGQEEIEAWWRPAARARGYAPADVDLIWSVLKSFASFGFCKAHAAAFALPTYHSAWL 831

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-------- 831
            KTH+P  FLA  +T +     K      DAR   I ++   VN     +++         
Sbjct: 832  KTHHPAAFLAGVLTHDPGMYPKRLIL-DDARSLGIAVLGLDVNGSGDTYRIERLECGGES 890

Query: 832  -------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
                         D  I  SL  +KG+       I+ A   +PF +L DF SR     ++
Sbjct: 891  DFVPVHPDLPDASDYGIRLSLTDVKGISGAEVASIVAA---QPFSNLGDFWSRA---TVS 944

Query: 879  RRVLESLVFAGALDCFG--------------YSRMQLLQSLDNIQKY------------- 911
            R ++E LV AGA D                  +R  LL  +  + ++             
Sbjct: 945  RPIVERLVMAGAFDSMHGIGGSGSGLGRRGRITRRDLLLHVGELDRWERASTGRSSRRRI 1004

Query: 912  -----AQWVEKN-------------RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
                 A    +                         + G   +            + R  
Sbjct: 1005 PPPALASDQVRERAAAQSQAARPVVAAADQSVQLTLDLGDRPELTPGTGLPEMTGTERVR 1064

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             E  VLG   S H ++ Y P+L  +G+    + + +   + + +A + V+ Q    R G 
Sbjct: 1065 AELDVLGLDASAHVVEFYGPMLDALGVVRSRDLLRSRSNSEVWVAGVKVATQTPPIRSGR 1124

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
            R+ ++T  +     +A FF
Sbjct: 1125 RVVFLTLDDSTGPVDATFF 1143


>gi|227524451|ref|ZP_03954500.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290]
 gi|227088410|gb|EEI23722.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290]
          Length = 1093

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 330/1009 (32%), Positives = 511/1009 (50%), Gaps = 48/1009 (4%)

Query: 32   ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKT 91
            ++ +       A+A+TD N ++ A+EF      AGIQPIIG  L++           G  
Sbjct: 1    MVTEAKKRGYKALAMTDINVMYGAVEFYDTCIDAGIQPIIGLTLNL----------PGVM 50

Query: 92   PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS 151
                  SI+LL     GYQ L+++ +      +      + +  L     +GL ++    
Sbjct: 51   LSENNYSILLLAKNQTGYQNLLKISTL-----KSSGETDVMIDQL-NGRLDGLYVILPPF 104

Query: 152  SGPIDRAFFFNSSQVAEKRLLTFKKL--FGDRLYVNLQRHRGYDRYRESQVVQLAYTHEL 209
            +  I+       S    + +     L      L   +  H          + ++A  +++
Sbjct: 105  A-EINDLLLQGKSADISELISKLMDLGLTKQDLKFGVDYHSS--DTLIDMLSKVAADNQV 161

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
             L+A     +L+ EDY    VL A+A  T +S           Y     + +        
Sbjct: 162  QLIADAPVQYLNAEDYFPMQVLKAIAAGTKISNVAELSQQVGPYFLRPQDQMEKEYQRLH 221

Query: 270  ---ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
               AL+   E+   C   ++   P LP+F          E    LR     GL  RL   
Sbjct: 222  LNAALQAIDEVVSNCHVEIKKKQPKLPQFETPNDM----EPGQYLRQLCEKGLSKRLEAA 277

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
             I+       YR RLD EL+VI  M F  YFLIV D I +A +  I  GPGRGS AGS+ 
Sbjct: 278  HISDDAP---YRHRLDRELSVIHSMGFDDYFLIVWDVINFAHQARIITGPGRGSAAGSLV 334

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            AY L ITD+DP+++ LLFERFLNP+R+ MPD D+D   D+RD+VI+YV  KYGH+RVAQI
Sbjct: 335  AYTLFITDVDPIKYELLFERFLNPERVQMPDIDLDIPDDKRDDVIQYVHQKYGHQRVAQI 394

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
            ITFG+L AK A RDVGR   +  +Q D   K IP+   H     A  +  + +       
Sbjct: 395  ITFGTLAAKQATRDVGRVFGLNPNQQDVWSKAIPSAF-HVTLADAYHNSQQLKNLVADSD 453

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
                L + +Q LEGL RH STHAAG+V+ D  L  LVP+  D    L +TQ++  ++E  
Sbjct: 454  LNKSLFKTAQVLEGLPRHYSTHAAGLVLSDNLLVDLVPLQ-DGNDGLLMTQYSKDYVESV 512

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GL+K DFLGL+ LT+L  +L  + Q  G K+++S IP DD +T  L     T G+FQ ES
Sbjct: 513  GLLKIDFLGLRNLTILADALAEIKQATGQKINISQIPLDDKKTLKLFANGETTGVFQFES 572

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
            SG+R  L  + P+  ED+  + +LYRPGP++NI     RK+ +E +      +  +LK T
Sbjct: 573  SGIRSVLRRLHPEQFEDVALVNALYRPGPMENIDEVVKRKSHQEALTYPDQSLKDILKST 632

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             GVI+YQEQVM +A  ++G+SL +AD+LRRAM KK  + MD+ K  F++GA K G  K +
Sbjct: 633  YGVIVYQEQVMLVASKMAGFSLGQADILRRAMSKKKLKVMDRMKSLFLTGAEKRGHPKQV 692

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A  +F+ + KFA+YGFNKSHA AY+ ++Y+ A++K ++P EF  A +    ++  K+K++
Sbjct: 693  AEKVFDYIEKFANYGFNKSHAVAYSKMAYELAYLKVYFPGEFHVALLNSVQNSSVKMKEY 752

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDS 864
              DA+   ++++ P +N    DF   D +I + LA+IKGV     + I+     +  + S
Sbjct: 753  LSDAKSMGVKVVAPDINKSRADFSYQDQQIVFGLASIKGVRHDMVQDILNDRDQNGRYKS 812

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
              +  +R+  K     ++ +L+++GALD F Y+R +L+ +        Q      +    
Sbjct: 813  FPNLLARLSDKYRKPDLINALIYSGALDGFSYNRSELISAAPEFISSIQL-----SGDSM 867

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            ++F       + + T+ +        R E E   LG Y SGHP++ +  + +++  K   
Sbjct: 868  SLF------KALEPTVPRKPEMPLMQRLEKENDYLGAYLSGHPVERFTALRKRLDAKLTN 921

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + V  +    + L   +   +  +T+ G ++ +   S+   E     FP
Sbjct: 922  QLVVGMN--QVVLILYITKVKIIRTKTGKQMAFFDGSDEVGEMSVTVFP 968


>gi|296112095|ref|YP_003622477.1| DNA-directed DNA polymerase III, alpha chain [Leuconostoc kimchii
            IMSNU 11154]
 gi|295833627|gb|ADG41508.1| DNA-directed DNA polymerase III, alpha chain [Leuconostoc kimchii
            IMSNU 11154]
          Length = 1113

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 301/1030 (29%), Positives = 507/1030 (49%), Gaps = 51/1030 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQ+ S+YSLL+   ++  I+         A+A+TD N ++ A++F Q A   GI+P+
Sbjct: 2    YAPLQILSAYSLLKNPNTIEQIIQVAKERHYEAVALTDINVMYGAVDFYQTARKYGIKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L I+          G     T   ++L+     GYQ L+ + S          ++ 
Sbjct: 62   FGLTLLIN----------GLVNTATTFPVLLIAENQAGYQNLMWISSAKMTSKSSDMTLT 111

Query: 131  ICLSWLQEIGTEGL-IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-KLFGDRLYVNLQR 188
            I    L     +G+ ++L+      + +         A         K+  + +Y+ +  
Sbjct: 112  IIADHL-----DGINVILS--QDSELAQFIAAE-YDDATDYWQDLTTKIKPENVYLGINP 163

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                    +S++V  +  ++  L+A ++  +L+ +D     VL A+  +  +        
Sbjct: 164  SLAP--QIQSRLVNFSLANQARLIALDDIDYLNPDDAFTTQVLKAIDANAQLDGVKVLSQ 221

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQKE 306
                +       V       +AL+   +   +      V             +  + ++ 
Sbjct: 222  QLGTHTLEDLNQVKAAYLTTDALKMAYQHNEQLVSKSHVDIMFKQTASLPSFELPNSEQT 281

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L+  +  GL    +     +      Y +RL  EL VI  + F+ YFLIV D + +
Sbjct: 282  SGEYLQFISEKGL----SNRLKGRKLPEDHYSKRLKHELQVINHLGFNDYFLIVWDIVNF 337

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A + NI +G GRGS AGS+ AYAL ITD+DPL+F LLFERFLNPDR+ MPD DID+  ++
Sbjct: 338  AHQKNIQMGAGRGSAAGSLVAYALGITDVDPLQFGLLFERFLNPDRVQMPDIDIDWPDNK 397

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL-IPNDPAH 485
            R+ ++ Y+ +KYG    AQIITFG+L AK ALRD  R   +  + + R+ +         
Sbjct: 398  REAILTYLHDKYGQRNFAQIITFGTLAAKQALRDTARVFGVSQAMMSRISRAIPQPKQGR 457

Query: 486  PVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             VS+Q  +      +       + D LL+++Q++EGL R+ STHAAG+V+    L + +P
Sbjct: 458  KVSIQDALESSDNLKNTLSTIENGDLLLKVAQQIEGLPRNYSTHAAGVVLSADVLVKTLP 517

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPF 603
            +      D  +TQF    +E  GL+K D LGL  L++L ++L           ++S +P 
Sbjct: 518  VQ-SGTDDRLLTQFEKNPVEALGLLKIDVLGLSNLSILAQTLYVAKANLPEYFNISDVPL 576

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD +T  L     T GIFQ ES G++  L  ++P   E I+A+ +LYRPGP  NI  +  
Sbjct: 577  DDEKTLDLYAAGDTDGIFQFESPGIKNVLRQLKPATFEHIVAVNALYRPGPSRNIETFIK 636

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R++G E +  +   +  +L  T G+I+YQEQVM +A+  +G++L EAD+LR AM KK  E
Sbjct: 637  RRHGLENVTMLDASLKTILAPTFGIIVYQEQVMLVAEAYAGFTLGEADILRSAMSKKKLE 696

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +M    ++F++GA   G     A  IF  + +FA+YGFN+SHA AY+ +S++ A+MK HY
Sbjct: 697  KMTAMHKQFVTGAVSLGHDAKQAEQIFAYIDEFANYGFNRSHAVAYSKLSFELAYMKAHY 756

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            PV F  A +   + + +K++++   A+   I + PPS+N     +   +  +   L  I+
Sbjct: 757  PVAFFTAVLNANLGSPDKVRRYVTAAKSRGITVKPPSINRSQRFWTSDNQTLQMGLNNIR 816

Query: 844  GVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GV T     ++E    +  F S + F  R+  K     +L  LV+AGALD FGY+R +L+
Sbjct: 817  GVRTDFVTTLLEERQNNGEFQSFQSFVRRLPDKFRKHDILIQLVYAGALDAFGYNRAELI 876

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             +LD++ + A              F        ++  ++K +  +S+ +  +E+ V+G  
Sbjct: 877  SALDDLIEAAS-------------FGDL---ILNETKIKKVAEFSSTEKLAHEKDVIGVN 920

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             SGHPLD Y  ++     +   +     +   I + A+V + ++ +T+KG  + ++T S+
Sbjct: 921  LSGHPLDSYLEMITTQHFQQIVDFTQ--KNQMITVIALVDNIRKTRTKKGEEMAFITVSD 978

Query: 1023 PAKEYEANFF 1032
                     F
Sbjct: 979  MTGSISVTIF 988


>gi|116617885|ref|YP_818256.1| DNA polymerase III catalytic subunit, DnaE type [Leuconostoc
            mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116096732|gb|ABJ61883.1| DNA polymerase III catalytic subunit, DnaE type [Leuconostoc
            mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 1112

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 310/1029 (30%), Positives = 509/1029 (49%), Gaps = 51/1029 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQ+ SSYSLL+   ++  I+         AIA+ D N ++ A+++ ++    GI+P+
Sbjct: 2    YAPLQILSSYSLLKNPNTIEQIVQTAKTRGYEAIALADVNVMYGAIDWFRQTKKHGIKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L ++          G     T+  +VLL     GYQ L+ L S         Q   
Sbjct: 62   FGLTLMVN----------GLVNTATLFPVVLLAENQVGYQNLMWLSSAKMTSQGDFQWET 111

Query: 131  ICLSWLQEIGTEGL-IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL-YVNLQR 188
            +          +G+ I+    +   + +       +           L  +R  ++ +  
Sbjct: 112  MVK------HLDGINIVF--PTDSELVQLISSG-YEEVNNYWHQLLTLVDERHSFIGINS 162

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                    + ++ Q +      ++A ++  +L+ +D     VL A+  +  +        
Sbjct: 163  QMAP--QIQERLAQFSERTGGHMIALDDIDYLNSDDAFTTQVLKAIDANVKLDDIKILAQ 220

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                ++     +V       E L+              V        +            
Sbjct: 221  QQGSHILRDLAVVQQEYQGTEILKTAYINNELLVSKSNVSIEFKDTALPPFETPSGVTNA 280

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L   AV+GL+ RL    ++       Y +RL  EL  I  + FS YFLIV D + +A 
Sbjct: 281  QFLETIAVSGLKKRLQGHNVSLNL----YEERLQHELKTIEVLGFSDYFLIVWDIVNFAH 336

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            KN+I  GPGRGS AGS+ AY+L ITD+DPL+F+LLFERFLN +R+ MPD DID+   +R+
Sbjct: 337  KNHIQTGPGRGSVAGSLVAYSLQITDVDPLQFNLLFERFLNDERVQMPDIDIDWPPSKRE 396

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP-YSQVDRLCKLIPNDPAHPV 487
            E+  Y+  KYG     QIITFG+L +K ALRDVGR   +P  +       +        V
Sbjct: 397  ELFTYLHQKYGKRNFGQIITFGTLASKQALRDVGRVFGLPTPTLSKLSASIPEGKNGRKV 456

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            S+       + + A     +   LL+ + K+EGL ++ STHAAGIV+   PL Q +P+  
Sbjct: 457  SIDDALKAPQLQNALRDIDNGRLLLQTALKIEGLPKNYSTHAAGIVLSANPLVQTLPVQ- 515

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDH 606
                   +TQF    +E+ GL+K D LGL+ L +L ++L +  +      D++ I  DD 
Sbjct: 516  SGTEGRLLTQFEKDPVEQLGLLKIDILGLQNLAILSQALYYAQKELPEGFDITKIALDDA 575

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L     T G+FQ ES+G++  L  ++P   E I+A+ +LYRPGP  NI  +  R++
Sbjct: 576  KTLALFAKGDTNGVFQFESAGIKNVLRKLKPATFEHIVAVNALYRPGPAQNIDKFIARRH 635

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            GKE +    P +  +L  T G+I+YQEQVM +A+  +G++L EADVLR AM KK  ++M 
Sbjct: 636  GKEAVTIPDPSLKSILAPTFGIIVYQEQVMLVAESYAGFTLGEADVLRSAMSKKKVDKMQ 695

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K  E+FI GA KNG  +  A  IF  + +FA+YGFN+SHA AY+ ++++ A++K HYPV 
Sbjct: 696  KLHEQFIKGALKNGHDQEQAELIFSYIDEFANYGFNRSHAVAYSKLAFELAYLKAHYPVA 755

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F  A +   +   +K++++  +A+   I ++ P VN     +   +N++   L  I+GV 
Sbjct: 756  FFTALLNANLGEQKKVQQYVSEAKIRGIVVLAPDVNKSYKFWTSIENQLQMGLNNIRGVR 815

Query: 847  TTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            T     ++E    +  F +++ F  R+  K   R VLE LV+AGALD FGY+R +L++++
Sbjct: 816  TDFVTGVLEERQNNGSFQTIQSFVRRLPDKMRKREVLEQLVYAGALDSFGYNRRELIENI 875

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
             ++ + A              F +      ++  ++K+     S R + E+ V+G   SG
Sbjct: 876  ASLIEGAS-------------FGNL---ILEETKIKKYDDFALSDRLKKEKEVIGVNLSG 919

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            HPLD Y   + + G   + +    ++ + + ++ A+V S +Q +T+KG  + +V  S+  
Sbjct: 920  HPLDTYVDFILENG---FSQIGNVVQPSQVEKIIAIVDSIRQIRTKKGDDMAFVKVSDTT 976

Query: 1025 KEYEANFFP 1033
             E     FP
Sbjct: 977  GEISVTIFP 985


>gi|89900021|ref|YP_522492.1| DNA polymerase III subunit alpha [Rhodoferax ferrireducens T118]
 gi|89344758|gb|ABD68961.1| DNA polymerase III, alpha subunit [Rhodoferax ferrireducens T118]
          Length = 1084

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 270/1079 (25%), Positives = 445/1079 (41%), Gaps = 120/1079 (11%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNIL-----------DKIAADQQPAIAITDTNNLFS 54
               P++  L   S++S   GA     ++                        TD  ++  
Sbjct: 15   ASVPAYCELHCLSNFSFGRGASHPEELVARAAALGYAALAL-----------TDECSVAG 63

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             +    +A   G++ + G +  +      +    G         +V L    + +  L E
Sbjct: 64   VVRAHTEAKKLGLKLLPGAEFAVT-----QADGAGGGALEAGFRLVALPHDLQAWGDLCE 118

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
             +++       K   R+           G  +L G     +  A      + A       
Sbjct: 119  FITQAR-RAAPKGQYRLLWQDAPWALLGGCEVLLG-----LPSAL---HFEAACAITTRA 169

Query: 175  KKLFGDRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            + LFG  L++ ++     D   +  ++ QLA    +PLVA  N            DVL A
Sbjct: 170  RALFGSNLWLLVELLLAPDDTLQGQRLQQLARLTGVPLVAAGNVHMHVRSRKPLQDVLSA 229

Query: 234  VAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            V     V    R  +   + +L++R  + +I+S    A   TV      S     +   L
Sbjct: 230  VRLGQPVFDCGRALQPNAEAHLRSRQRLAAIYSPDVLANTLTVAARCTFSLDELRYQYPL 289

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
               +E             LR  A  G   R  QG           +Q+LD EL +I  + 
Sbjct: 290  ETVLE------GLSAAQTLRRYAAEGALNRYPQG------TPASVQQQLDHELALITELH 337

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            F  YFL V D +++A+  +I    GRGS A S   Y L +T++DP R ++LFERF++ +R
Sbjct: 338  FEMYFLTVHDIVRFARSRHIL-CQGRGSAANSAVCYCLGVTEVDPSRMNMLFERFISRER 396

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
               PD D+DF   RR+EVI+Y+  KYG ER A      S + ++ALRDVGRAL +P + +
Sbjct: 397  NEPPDIDVDFEHQRREEVIQYIYAKYGRERAALSAVVISYRPRSALRDVGRALAVPEALI 456

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADP--SVDRLLEISQKLEGLYRHASTHAA 530
              L K  P   +  V ++ +        A +A P   +   L++S +L+   RH S H  
Sbjct: 457  SALAKEHPGMYSRTVLVERLQSALALLAADVAPPAECLQLWLDLSTQLQRFPRHLSQHPG 516

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G V+    L++LVP+      +  + Q++   ++  GL+K D L L  L+ +++ LD ++
Sbjct: 517  GFVLTRGKLTRLVPVENAAMPERSIIQWDKDDLDAMGLLKVDVLALGMLSAIRRCLDLIS 576

Query: 591  -QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
             QRG    +  IP +D  TY ++    T+G+FQ+ES      L  ++P C  D++  V++
Sbjct: 577  VQRGTPFSMQDIPPEDLATYDMICQADTVGVFQIESRAQMSMLPRLKPRCFYDLVVEVAI 636

Query: 650  YRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             RPGPI   +V+     +   E++    P +  +LK T GV I+QEQVMQIA   + +S 
Sbjct: 637  VRPGPIQGGMVHPYLKAREHPEQVPYPSPALQEVLKRTLGVPIFQEQVMQIAMAAADFSA 696

Query: 708  SEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             E+D LRR+M    ++  + K  +R + G  KNG S   A  IF+ +  F +YGF +SHA
Sbjct: 697  GESDSLRRSMAAWKRQGGVHKFYDRLVGGMLKNGYSLEFAEQIFKQIEGFGEYGFPESHA 756

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A++A++ Y ++W+K H P  FLAA +  +        +  QDA++  + + P  V     
Sbjct: 757  ASFALLVYVSSWLKRHQPACFLAALLNSQPLGFYSPSQLVQDAQRHGVGVRPVDVTRSDW 816

Query: 827  DFKVGDNR------------------------IYYSLAAIKGVGTTTARHIMEASADKPF 862
            D  +   +                        +   L  + G+  + A+ I+ A  + PF
Sbjct: 817  DCTLEPAKSTKLLGSDPNSGAAQLPDVCRSPFVRLGLRQVSGLSESAAQRIVAARVEAPF 876

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGAL---------DCFGYSRMQLLQSLDNIQKYAQ 913
             S ED   R          LE    AG L               R Q +           
Sbjct: 877  TSTEDLALRC--------ALE----AGDLKALASADALASLSGHRRQQVWD--------- 915

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
                      +N     +     +  L +    +       +   LG     HPL + + 
Sbjct: 916  ------AAAQQNAPGLLRAVPVAEAAL-QLPAASEGEEVIFDYAALGLTLRSHPLLLLRE 968

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             L KM +    +      G   R   +V  +QQ +T KG  + +VT  +   +     +
Sbjct: 969  QLSKMRLMTAAQLRDLPNGRLARACGIVTMRQQPQTAKG--VIFVTLEDETGQVNVIVW 1025


>gi|241766940|ref|ZP_04764742.1| DNA polymerase III, alpha subunit [Acidovorax delafieldii 2AN]
 gi|241362588|gb|EER58455.1| DNA polymerase III, alpha subunit [Acidovorax delafieldii 2AN]
          Length = 1100

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 250/1090 (22%), Positives = 430/1090 (39%), Gaps = 125/1090 (11%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
               P +  L   SS+S   GA     ++ + AA    A+A+TD  ++   +   + A   
Sbjct: 9    PHLPGYAELHCLSSFSFQRGASQPQELVARAAALGYQALALTDECSVAGVVRAHEAARDV 68

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
             ++ I+G +                        +V L    EG+  L E ++     D  
Sbjct: 69   DLRLILGSEF-----------------AWGDLRLVALARHLEGWGNLCEFITAAR-RDAP 110

Query: 126  KQSVRI----CLSWL-----------QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
            K   R+      S L           +  G    + ++        +             
Sbjct: 111  KGQYRLHEGTDFSLLQGCELLLIPRRERFGASDFVAISACLESAAGQLDIKIRP------ 164

Query: 171  LLTFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                       L++ ++ H    D    + + ++    +LPLVA  +    +       D
Sbjct: 165  ----------HLWLAVELHQGADDSLWLATLQRVGAALQLPLVAAGDVHMHARSRKPLQD 214

Query: 230  VLMAVAHSTV-VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            VL AV             +   + +L+ R  + SI+     A   TV      +  L   
Sbjct: 215  VLTAVQRGCSVSECGFALQFNAERHLRPRLRLASIYPPWLLAATLTVAARCTFN--LDEI 272

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                P                 L   A  G   R   G        +  + ++  EL +I
Sbjct: 273  RYRYPLETVPPGM----TAREALAWHAWEGARGRYPAGV------PEKVQAQIVRELELI 322

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
            A+  +  YFL V D +++A+   I    GRGS A SV  + L IT +DP +  LLFERF+
Sbjct: 323  AQCGYEMYFLTVHDIVRYARSQGIL-CQGRGSAANSVVCFCLGITAVDPEQSHLLFERFI 381

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            + +R   PD D+DF  DRR+EVI+Y+ +KYG ER A      + + ++ALRDVG+AL + 
Sbjct: 382  SKERREPPDIDVDFEHDRREEVIQYIYSKYGRERAAIAAVVTTYRTRSALRDVGKALGVA 441

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
               +D   K              +   ++     L+       L+++ +L+G  RH S H
Sbjct: 442  PVLIDAFAKDHQWFDDA-FPADRLRQMAQALGVPLSARQAAFWLDLAGQLKGFPRHLSQH 500

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
              G V+ +  L++LVP+         V Q++   ++  GL+K D L L  L+ L++ LD 
Sbjct: 501  VGGFVLTEGKLTRLVPVEPASMEGRSVIQWDKDDLDAMGLLKVDVLALGMLSALRRCLDL 560

Query: 589  L-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
              A RG + +L+ IP +D  TY ++    T+G+FQ+ES      L  +QP    D++  V
Sbjct: 561  RSALRGEQWELADIPREDAATYDMVCAADTVGVFQIESRAQMSMLPRLQPRVFYDLVVEV 620

Query: 648  SLYRPGPIDNIVVYN-----NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            ++ RPGPI   +V+       R+   + +V     +   L+ T G+ I+QEQVMQIA + 
Sbjct: 621  AIVRPGPIQGGMVHPYLQARERRRRGQPLVLEKEELGAALERTLGIPIFQEQVMQIAMIA 680

Query: 703  SGYSLSEADVLRRAMGKKIKEE-MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            + +S +EAD LRR+M    +   +   +ER + G   NG  +  A  IF+ +  F +YGF
Sbjct: 681  ARFSAAEADALRRSMAAWKRTGGVHHFEERLVEGMVANGYERGFAERIFQQMLGFGEYGF 740

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             +SHA ++A+++Y ++W+K H P  FLAA +  +        +  QDAR+  ++++P  V
Sbjct: 741  PESHAHSFALLAYDSSWLKRHEPACFLAALLNSQPMGFYPPAQLVQDARRHGVRVLPIDV 800

Query: 822  NTPCVDFKVGDN------------RIYYSLAAIKGVGTTTARHIMEASA--------DKP 861
                 D  +                +   L  + G+G      +++A          D  
Sbjct: 801  TASDWDCTIEGPLAPIAGVAQPQPAVRLGLRLVSGLGAAAGVRVVQARQALRETAGVDG- 859

Query: 862  FDSLEDFCSRVDSKKL----------NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
              S+ D   R D   +               E L            R QL Q        
Sbjct: 860  --SVGDGRGRGDDAGVRTGGAAAPAAVFASTEDLAL----------RAQLSQHDLRALAA 907

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKI--TLE------KFSVENSSVRFENEQRVLGFYF 963
            A  +     ++ + ++       +  +   +                    +    G   
Sbjct: 908  ADALASLSGHRRQQMWDAAAQHTAPALWREVPVHEAPLALPAAPEGEEIVFDYAATGLTL 967

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
              HPL + +  L +  ++   +      G  +R   +V  +Q+  T KG+   +VT  + 
Sbjct: 968  RRHPLALLRERLTRWRLRTALQLQGVPHGQKVRACGIVTVRQRPGTAKGTM--FVTLEDE 1025

Query: 1024 AKEYEANFFP 1033
                    +P
Sbjct: 1026 TGPVNVIVWP 1035


>gi|298294344|ref|YP_003696283.1| DNA polymerase III subunit alpha [Starkeya novella DSM 506]
 gi|296930855|gb|ADH91664.1| DNA polymerase III, alpha subunit [Starkeya novella DSM 506]
          Length = 1140

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 254/1096 (23%), Positives = 432/1096 (39%), Gaps = 121/1096 (11%)

Query: 5    LEKS--PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS--- 59
            +  +  P F  +   S++S L GA     ++ +       +I I D N +   +      
Sbjct: 1    MTSASPPFFAEMVTASNFSFLRGASKAEWLVLQSLLLGHASIGIADRNTVAGVVRAYAAL 60

Query: 60   -------------------------------------QKACAAGIQP-------IIGCQL 75
                                                 + A  AG+ P       ++G +L
Sbjct: 61   KDIGERFTGFWKVPKQERKEPKKGEEDEVTRLIRQWAEAAADAGLGPELPPFTLVVGARL 120

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
                                 P IV      +G+ RL  L++   L    K    + L  
Sbjct: 121  VFADG---------------TPDIVAHAQDRDGWGRLCRLLTAGNLRGA-KGECILKLDD 164

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHRGYDR 194
            L        ++L      P             +  L    +     L++      +G DR
Sbjct: 165  LLADARGLSLILMPPRDVP------AKRLAGLKDVLAQLDEAAPGSLWLGAAMVRKGDDR 218

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHY 253
             R + +  LA    +PL+ATN+ L+    + +  +VL  +     +    R      + +
Sbjct: 219  RRLAALKALATKTRVPLLATNDVLYHHPAERDLQNVLTCIREGVTIEAAGRLLDANAERH 278

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            LK   EMV +F D PEA+E T     R  F L       P              + +L  
Sbjct: 279  LKPPQEMVRLFRDAPEAVEETRNFLARIDFSLGDLKYEYPEEPVPPG----YTPQAKLEE 334

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
                   +R  +G             +L+ EL +I  + ++ YFL + D +++A+K  I 
Sbjct: 335  LTWQRAAIRYPEGV------PDKVVGQLNTELALIGELGYASYFLTIRDIVEFAEKERIL 388

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
               GRGS A S   Y L IT +DP    LLFERFL+ +R   PD D+DF  +RR+EVI+Y
Sbjct: 389  -CQGRGSAANSAVCYVLGITAVDPFESELLFERFLSKERREPPDIDVDFEHERREEVIQY 447

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            V  +YG  R   + T  S + ++A+RDVG+AL +      RL   +       +      
Sbjct: 448  VYRRYGRHRAGIVATVISYRPRSAIRDVGKALGLTEDVTARLAGTVWGSWGDDIK----D 503

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
              +R      ++P V R + ++ +L G  RH S H  G V+    L + VP+      D 
Sbjct: 504  SQAREAGLDPSNPMVARAIGLAVRLLGFPRHLSQHVGGFVLTQNRLDETVPIGNAAMKDR 563

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-LSLIPFDDHETYHLL 612
               +++   I+  GL+K D L L  LT ++K+LD + +       L+ +P +  + Y +L
Sbjct: 564  TFIEWDKDDIDTLGLLKVDVLALGMLTCIRKALDLMREHEGIDYGLAEVPREQPDVYAML 623

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEK 670
                ++G+FQ+ES      L  ++P  + D++  V++ RPGPI   +V+    R+   E 
Sbjct: 624  QKGDSIGVFQVESRAQINMLPRLKPRKLYDLVIQVAIVRPGPIQGNMVHPYLRRRERSEP 683

Query: 671  IVSIHP-------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK- 722
            IV   P        +  +L+ T GV ++QEQ M++A + + +S  EA+ LRRAM      
Sbjct: 684  IVYPSPGPQYRQDELYDVLERTLGVPLFQEQAMKLAMVAAEFSSEEANQLRRAMATFRNL 743

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              + K +   I    + G  +  A   FE +  F +YGF +SHAA++A + Y +A++K  
Sbjct: 744  GTIGKFQGMLIGRMVRRGYERAFAERCFEQIKGFGEYGFPESHAASFAKLVYISAFIKCR 803

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR------IY 836
            +P  F  A +  +        +  +DAR+  ++I PP VN    D  +  +       + 
Sbjct: 804  HPAAFAVALLNSQPMGFYAPAQIVRDAREHGVEIRPPDVNYSFHDNTLERDAPGESLALR 863

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  I G     +  ++EA A      +E    R     L    L  L  A A    G 
Sbjct: 864  LGLRQIDGFSEEWSERLVEARAGGFVRDIETLFRRA---GLPVGALRKLADADAFGSLGL 920

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R +    +  +   A             +FA  +             +     +   + 
Sbjct: 921  DRREAAWIVRRLPNDA----------PLPLFAAAQARELGADADAHLPLMPLPEQIAVDY 970

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
            +       GHP+ + + +    G+    E  A   G  +R A +V+ +Q+    KG+ + 
Sbjct: 971  QTTRLSLKGHPMGMLREVFAAEGVASSAEVSALRDGTYVRAAGVVLVRQRPG--KGNAV- 1027

Query: 1017 WVTFSEPAKEYEANFF 1032
            ++T  +         +
Sbjct: 1028 FMTLEDETGIVNVLLW 1043


>gi|259500669|ref|ZP_05743571.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus iners
            DSM 13335]
 gi|302191358|ref|ZP_07267612.1| DNA polymerase III, alpha subunit [Lactobacillus iners AB-1]
 gi|259168053|gb|EEW52548.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus iners
            DSM 13335]
          Length = 1040

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 318/1024 (31%), Positives = 510/1024 (49%), Gaps = 38/1024 (3%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+  +S+  ++D        AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6    LQNISSFTLLKSPISIEQLIDSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
            QL I+          G         ++++     GYQ ++ L S + L  + GK+ + + 
Sbjct: 66   QLRIN----------GLINENQNFDLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
            L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116  LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                Y  S V  L+    L LVA  +  ++   D    +VL ++  +  +       +  
Sbjct: 175  SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDVFLQEVLQSIDDNQSIRDGYELTLKH 233

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                  +++     S     +   +   ++      V        + K            
Sbjct: 234  VGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFDTSYEF 293

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L + A+ GL+ +  +  I        Y  RL +EL +I  M F+ YFLIV D I +    
Sbjct: 294  LHHLAMTGLQAKFNKHDI-----PAKYLNRLKYELKIIDEMGFNDYFLIVWDVINYCHSI 348

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   +RR+EV
Sbjct: 349  GILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPDNRRNEV 408

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + Y+ +KYG + VAQI++F +  AK  L DVG A       ++   K IP   +      
Sbjct: 409  VLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQKAIPKSKSKITLSD 468

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V +     
Sbjct: 469  AYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVGLQNGSL 528

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
              +PVTQ   K++E  GL+K DFLGL  LT+L  + + +   G+K+D+  IP DD  T  
Sbjct: 529  -GIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNAFNEVKMSGIKLDMDKIPLDDPATIK 587

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  RKN +EK
Sbjct: 588  LFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRRKNKEEK 647

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   EM K   
Sbjct: 648  VVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSMEMKKIGV 707

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++ A + G S + A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP +F  A
Sbjct: 708  DFVNRAVQQGHSASAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYPKQFYVA 767

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTT 849
             +   + + +K+ K+  D +  NI+I  P +N    +F + D   I   L +I G+    
Sbjct: 768  LLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSIIGLRMDF 827

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               IM     +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL S +++ 
Sbjct: 828  VEQIMNL--QRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLASYEDLL 885

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               +      +  +  +F   +    D        + +++ + E E  VLGF     P+ 
Sbjct: 886  ICIK-----MSGGNNVLFQALEPKELD------IKMPSNAQKEEWETSVLGFSPQIDPIL 934

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K G K + +      G ++     ++  +   T+   ++ +  F++  +  + 
Sbjct: 935  AAQIYAKKYGFKPFSDFTFYDEGVSV---GKMMDIKVITTKNNKKMAFAKFNDLHETVDF 991

Query: 1030 NFFP 1033
              FP
Sbjct: 992  VIFP 995


>gi|227513307|ref|ZP_03943356.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577]
 gi|227083508|gb|EEI18820.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577]
          Length = 1093

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 330/1015 (32%), Positives = 511/1015 (50%), Gaps = 60/1015 (5%)

Query: 32   ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKT 91
            ++ +       A+A+TD N ++ A+EF      AGIQPIIG  L++           G  
Sbjct: 1    MVTEAKKRGYKALAMTDINVMYGAVEFYDTCIDAGIQPIIGLTLNL----------PGVM 50

Query: 92   PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS 151
                  SI+LL     GYQ L+++ +      +      + +  L     +GL ++    
Sbjct: 51   LSENNYSILLLAKNQTGYQNLLKISTL-----KSSGETNVMIDQL-NGRLDGLYVILPPF 104

Query: 152  SGPIDRAFFFNSSQVAEKRLLTFKKL--------FGDRLYVNLQRHRGYDRYRESQVVQL 203
            +  I+       S    + +     L        FG   +                + ++
Sbjct: 105  A-EINDLLLQGKSADISELISKLMDLGLTKQDIKFGVDYH--------SSDTLIDMLSKV 155

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
            A  +++ L+A     +L+ EDY    VL A+A  T +S           Y     + +  
Sbjct: 156  AADNQVQLIADAPVQYLNAEDYFPMQVLKAIAAGTKISNVAELSQQVGPYFLRPQDQMEK 215

Query: 264  FSDLPE---ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
                     AL+   E+   C   ++   P LP+F          E    LR     GL 
Sbjct: 216  EYQRLHLNAALQAIDEVVSNCHVEIKKKQPKLPQFETPNDM----EPGQYLRQLCERGLS 271

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
             RL    I+       YR RLD EL+VI  M F  YFLIV D I +A +  I  GPGRGS
Sbjct: 272  KRLEAAHISDDAP---YRHRLDRELSVIHSMGFDDYFLIVWDVINFAHQARIITGPGRGS 328

Query: 381  GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
             AGS+ AY L ITD+DP+++ LLFERFLNP+R+ MPD D+D   D+RD+VI+YV  KYGH
Sbjct: 329  AAGSLVAYTLFITDVDPIKYELLFERFLNPERVQMPDIDLDIPDDKRDDVIQYVHQKYGH 388

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            +RVAQIITFG+L AK A RDVGR   +  +Q D   K IP+   H     A  +  + + 
Sbjct: 389  QRVAQIITFGTLAAKQATRDVGRVFGLNPNQQDVWSKAIPSAF-HVTLADAYHNSQQLKN 447

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
                      L + +Q LEGL RH STHAAG+V+ D  L  LVP+  D    L +TQ++ 
Sbjct: 448  LVADSNLNKSLFKTAQVLEGLPRHYSTHAAGLVLSDNLLVDLVPLQ-DGNDGLLMTQYSK 506

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLG 619
             ++E  GL+K DFLGL+ LT+L  +L  + Q  G K+++S IP DD +T  L     T G
Sbjct: 507  DYVESVGLLKIDFLGLRNLTILADALAEIKQATGQKINISQIPLDDKKTLKLFANGDTTG 566

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            +FQ ESSG+R  L  + P+  ED+  + +LYRPGP++NI     RK+ +E +      + 
Sbjct: 567  VFQFESSGIRSVLRRLHPEQFEDVALVNALYRPGPMENIDEVVKRKSHQEALTYPDQSLK 626

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
             +LK T GVI+YQEQVM +A  ++G+SL +AD+LRRAM KK  + MD+ K  F++GA K 
Sbjct: 627  DILKSTYGVIVYQEQVMLVASKMAGFSLGQADILRRAMSKKKLKVMDRMKSLFLTGAEKR 686

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G  K +A  +F+ + KFA+YGFNKSHA AY+ ++Y+ A++K ++P EF  A +    ++ 
Sbjct: 687  GHPKQVAEKVFDYIEKFANYGFNKSHAVAYSKMAYELAYLKVYFPGEFHVALLNSVQNSS 746

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-A 858
             K+K++  DA+   ++++ P +N    DF   D +I + LA+IKGV     + I+     
Sbjct: 747  VKMKEYLSDAKSMGVKVVAPDINKSRADFSYQDQQIVFGLASIKGVRHDMVQDILNDRDQ 806

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
            +  + S  +  +R+  K     ++ +L+++GALD F Y+R +L+ +        Q     
Sbjct: 807  NGRYKSFPNLLARLSDKYRKPDLINALIYSGALDGFSYNRSELISAAPEFISSIQL---- 862

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
             +    ++F       + + T+ +        R E E   LG Y SGHP++ +  + +++
Sbjct: 863  -SGDSMSLF------KALEPTVPRKPEMPLMQRLEKENDYLGAYLSGHPVERFTALRKRL 915

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              K   + V  +    + L   +   +  +T+ G ++ +   S+   E     FP
Sbjct: 916  DAKLTNQLVVGMN--QVVLILYITKVKIIRTKTGKQMAFFDGSDEVGEMSVTVFP 968


>gi|158335662|ref|YP_001516834.1| DNA polymerase III subunit alpha [Acaryochloris marina MBIC11017]
 gi|158305903|gb|ABW27520.1| DNA polymerase III alpha subunit [Acaryochloris marina MBIC11017]
          Length = 864

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 306/846 (36%), Positives = 467/846 (55%), Gaps = 29/846 (3%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L +++ +      PAIA+TD   ++ A+   +     GI+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPDLVSRAVELNMPAIALTDHGVMYGAIGLIKTCKKQGIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           I+G ++ +   D  K   + +         V+L    +GYQ L++L +   L   QG+  
Sbjct: 62  IVGNEMYVINGDITKQERRPR------YHQVVLAKNKKGYQNLVKLTTISSLHGVQGRGI 115

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L+E   EGLI+ +    G I +A       +A +    +K+LFGD  Y+ 
Sbjct: 116 FSRPCINKDLLEE-HHEGLIVTSACLGGEIPQAIMKEKPDIARRIAKWYKELFGDDYYLE 174

Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR    ++V++A   ++ ++ATN+S F+S  D E+HD L+ +    ++++  
Sbjct: 175 IQDHGSQEDRVVNVELVRIAQELDIKVIATNDSHFISCYDVESHDALLCIQTGKLITEDK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           R R +   YLK   EM  +F D    + + + +      +  ++ +              
Sbjct: 235 RLRYSGTEYLKTADEMALMFRDHLTDDVIADAIATTLEVAEKIEAYDIFRDPQSPDYEVP 294

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                E  L      GL  R       +      Y++RL++EL ++ +M FS YFL+V D
Sbjct: 295 DGYTAETYLEEVTWDGLLERC--NCKERSEVTDTYKERLEYELEMLQQMGFSTYFLVVWD 352

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           +I++A+ NNIPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 353 YIKYARDNNIPVGPGRGSAAGSLVAYALGITNIDPVHHGLLFERFLNPERKSMPDIDTDF 412

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           C ++RD +I YV  KYG +RVAQIITF  + +KA L+DV R L +PY + DR+ KLIP  
Sbjct: 413 CIEKRDAMIDYVTRKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEADRMAKLIPVA 472

Query: 483 PAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
              P  L+ +  D      F+E    DP V R L+++ ++EG  +    HAAG+VI   P
Sbjct: 473 RGKPTKLKVMISDETPAPEFKEKYDKDPIVRRWLDMAIRIEGTNKTFGVHAAGVVIASEP 532

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVD 597
           L Q+VP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT++QK+ D L Q R + +D
Sbjct: 533 LDQIVPLQRN-NDGAVITQYFMEDLESLGLLKMDFLGLKNLTMIQKTTDLLKQNRQLDLD 591

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           +  +P DD E + LL      G+FQLESSGMRQ ++ ++P  IEDI ++++LYRPGP+D 
Sbjct: 592 VDRVPMDDPEAFQLLARGELEGVFQLESSGMRQVVKDLKPSNIEDISSILALYRPGPLDA 651

Query: 658 --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             I  + NRK+G+E I   H LI P+L+ET G+++YQEQ+M+IAQ ++GYSL +AD+LRR
Sbjct: 652 GLIPKFINRKHGRESIDYPHDLIKPILEETYGIMVYQEQIMKIAQDMAGYSLGQADLLRR 711

Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
           AMGKK   EM+K +E FI GA++ G+ K ++ N+F+ +  FA+Y  +           + 
Sbjct: 712 AMGKKKMAEMEKHREIFIDGAAEKGVDKKVSENLFDQMLLFAEYCLSYDTPVLTLEYGWL 771

Query: 776 TAWMKTHYPVEFLAASMTLEMDNV-----EKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
                    +E    S+            +   +  Q+  ++ +        T    F  
Sbjct: 772 PIGQVVQEQIECQVFSINERGHLYTQPIAQWHHRGQQEVFEYTLADGSTIQATAEHQFMT 831

Query: 831 GDNRIY 836
            D ++Y
Sbjct: 832 TDGQMY 837


>gi|17231070|ref|NP_487618.1| DNA polymerase III subunit alpha [Nostoc sp. PCC 7120]
 gi|17132711|dbj|BAB75277.1| DNA polymerase III alpha subunit [Nostoc sp. PCC 7120]
          Length = 877

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 307/885 (34%), Positives = 472/885 (53%), Gaps = 56/885 (6%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+  A    AIA+TD   ++ A+E  +   +  I+P
Sbjct: 2   SFVPLHIHSDYSLLDGASQLPELIDQAIALGMKAIAVTDHGVMYGAIELLKICRSKNIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ I   D  K               V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62  IIGNEMYILNGDLEKQERGRPK-----YHQVVLAKNTKGYKNLVKLTTISHLQGVQGKGI 116

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L+E   EGLI+ +    G I +A   N    A K    +K +FGD  Y+ 
Sbjct: 117 FSRPCINKDLLKEYH-EGLIVTSACLGGEIPQAILSNRPDAARKVAKWYKDVFGDDFYLE 175

Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR    +++++A   E+  VATN+S ++S  D EAHD L+ +    ++S+  
Sbjct: 176 IQDHGSQEDRIVNVEIIKIARELEIKFVATNDSHYISCFDVEAHDALLCIQTGKLISEDK 235

Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           R R +   YLK+  EM  +F D    + +   +      +  ++ +  +    I      
Sbjct: 236 RMRYSGTEYLKSGEEMKLLFRDHLTDDVIAEAIATTEEVADKVEPYHIMGEPRIPNYPIP 295

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                +  +   A  GL  +L     ++      YR+RL++EL ++ +M FS YFL+V D
Sbjct: 296 SGHTPDTYVEEVAWQGLLEKL--NRKSRNEVEPVYRERLEYELKMLQQMGFSSYFLVVWD 353

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           +I++A+ NNIPVGPGRGS AGS+ AY + IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 354 YIKFARDNNIPVGPGRGSAAGSLVAYTMGITNIDPVHHGLLFERFLNPERKSMPDIDTDF 413

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           C ++RD+VI YV +KYG ERVAQIITF  L +KA L+DV R L +PY + D++ KLIP  
Sbjct: 414 CIEQRDKVIEYVTDKYGKERVAQIITFNRLTSKAVLKDVARVLNIPYGESDKMAKLIPVV 473

Query: 483 PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
              P  L+ +      +  F+E    DP V   L+++ ++EG  +    HAAG+VI   P
Sbjct: 474 RGKPTKLKVMISDATPEPEFKEKYDNDPRVRHWLDMAMRIEGTNKTFGVHAAGVVISADP 533

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
           L ++VP+ ++      +TQ+ M+ +E  GL+K DFLGLK LT++QK++D + ++      
Sbjct: 534 LDEIVPLQKN-NDGSVITQYFMEDLESMGLLKMDFLGLKNLTMIQKTIDLIEEKHGFRID 592

Query: 599 SLI--------------------PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                                  P D  +TY LL +    GIFQLESSGM+Q +  ++P 
Sbjct: 593 PYEITSQERKAQKILAKGEYKTLPKDVQKTYELLESGELEGIFQLESSGMKQIVRDLKPS 652

Query: 639 CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            IEDI ++++LYRPGP+D   I  + NRK+G+E I     L++P+L ET G+++YQEQ+M
Sbjct: 653 NIEDISSILALYRPGPLDAGLIPKFINRKHGRENIDYESQLLEPILNETYGIMVYQEQIM 712

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
           +IAQ ++GY+L +AD+LRRAMGKK   EM KQ+E+FI G++KNG+ K +A  +F+ + KF
Sbjct: 713 KIAQDMAGYTLGQADLLRRAMGKKKVSEMQKQQEKFIDGSTKNGVKKQVAEKLFDDMLKF 772

Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE-----MDNVEKIKKFCQDARQ 811
           A+Y  +           +          +E    S+            +   +  Q+  +
Sbjct: 773 AEYCLSYDTEVLTVEYGFVPIGEIVEKGIECSVFSINNNGIVYTQPIAQWHHRGKQEVFE 832

Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGT 847
           + ++       T    F   D ++            L  +KG+  
Sbjct: 833 YCLEDGSIIKATKDHKFMTQDGKMLPIDEIFEQELDLLQVKGLPE 877


>gi|316935042|ref|YP_004110024.1| DNA polymerase III subunit alpha [Rhodopseudomonas palustris DX-1]
 gi|315602756|gb|ADU45291.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris DX-1]
          Length = 1180

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 252/1118 (22%), Positives = 436/1118 (38%), Gaps = 137/1118 (12%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P +  + V +++S LEG     + + + +     AI I D N L   +    +     
Sbjct: 2    SAPRYAEIGVTTNFSFLEGGSHPQDYVHEASRLGLDAIGIADRNTLAGVVRAYGELDNED 61

Query: 67   I----QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
            +    + +IG +L                     P ++   +    Y RL  L+S   L 
Sbjct: 62   LAYKPKLLIGARLCFADG---------------TPDLLAYPTDRAAYGRLCRLLSAGKLR 106

Query: 123  DQGKQSVRICLSWLQEIGTEG----------------------------LIMLT------ 148
              GK    +  + L+    E                             L+ L+      
Sbjct: 107  -AGKGECHLTFADLEAFIDEASASMNQPSASIHQLPTSSWPGSSRPSTPLLRLSQQDVDA 165

Query: 149  ---GGSSG-----------PIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYD 193
                G  G            +    +   ++     L     L    +++ L  + RG D
Sbjct: 166  RHKAGHDGGKVTGRHSKILLVVMPAYRFQTKAIATALERLTALNAGAVWLGLAPYYRGDD 225

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDH 252
            + R  ++ ++A    +P +ATN+ L+         DVL  V   T + +  R      + 
Sbjct: 226  KRRLDRLRRIAVAARVPCIATNDVLYHHASRRALQDVLTCVREKTTIDKAGRRLEGNAER 285

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
            +LK  +EM  +F   P+A+  T+  A R  F L       P           K  +  L+
Sbjct: 286  HLKPAAEMARLFRADPDAIAETLRFAGRIGFTLDELKYHYPDEPVPPG----KTAQAHLK 341

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
            +    G++    QG       +   +  +D EL +I R  ++ YFL V D +++A+  +I
Sbjct: 342  DLTEQGIKQYFPQG------ISDKLKATIDKELAIIERRGYAHYFLTVHDIVRYARSQDI 395

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                GRGS A S   Y L IT +DP    LLFERF++ +R   PD D+DF   RR+EV++
Sbjct: 396  L-CQGRGSAANSAVCYVLGITCVDPTEIDLLFERFVSEERDEPPDIDVDFEHSRREEVMQ 454

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            Y+  +YG  R A + T    + ++A+RDVG+AL +       L   +       ++    
Sbjct: 455  YIYRRYGRHRAAIVATVIHYRPRSAIRDVGKALGLSEDVTAALADTVWGSWGRGLN---- 510

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
                R       +P + R +E++ +L G  RH S H  G V+    L   VP+     +D
Sbjct: 511  EMQVRQAGLDPHNPMIGRAVELATELIGFPRHLSQHVGGYVLTQDRLDSYVPIGNAAMAD 570

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL--SLIPFDDHETYH 610
                +++   I+   ++K D L L  LT ++K  D +AQ          +   DD++ Y 
Sbjct: 571  RTFIEWDKDDIDAVKMMKVDVLALGMLTCIRKGFDLIAQHKGVRFQLSDIKSEDDNKVYK 630

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGK 668
            +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGPI   +V+    R+NG+
Sbjct: 631  MLQRGESIGVFQVESRAQMNMLPRLKPRCFYDLVIEVAIVRPGPIQGDMVHPYLRRRNGQ 690

Query: 669  EKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            E +V   P         +  +L +T GV ++QEQ M+IA   + ++  EA+ LRRAM   
Sbjct: 691  EPVVYPSPAGEAGDKDELRQILGKTLGVPLFQEQAMRIAIEAAHFTPDEANQLRRAMATF 750

Query: 721  IKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
                 + K + + +      G   T A N FE +  F  YGF +SHAA++A + Y +AWM
Sbjct: 751  RNVGTIGKFEAKMVGNLMARGYDATFAKNCFEQIKGFGSYGFPESHAASFAKLVYVSAWM 810

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----NR 834
            K  +P  F  A +  +        +   DAR   + + P  V+       + +     + 
Sbjct: 811  KCEHPDAFCCALLNSQPMGFYAPAQIVGDARSNRVDVRPVDVSFSEGQCTLEERCGEHHA 870

Query: 835  IYYSLAAIKGVG--TTTARHIMEASAD----------------KPFDSLEDFCSRVDSKK 876
            +      I G          +  A+ +                 PF SLE F        
Sbjct: 871  VRLGFRMIDGFRWADPDEERVRLAAGELPSDDWAARIVAARARGPFSSLEQFGR---ITG 927

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            L +R L  L  A A    G  R   L ++  +                 +F         
Sbjct: 928  LPKRALILLADADAFRSLGLDRRAALWAVRRLPDDV----------PLPLFEAASAREQQ 977

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT-IRGNNI 995
                    +   +     + + +     GHP++  + +     +    E   T   G  +
Sbjct: 978  DEHAAPLPLMPMAEHVVADYQTVRLSLKGHPMEFLRALFAAERVVTCREVSDTRRNGRRV 1037

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            R A +V+ +Q+  +  G  + ++T  +         +P
Sbjct: 1038 RCAGVVLVRQRPGSANG--VIFMTIEDETGIANIVVWP 1073


>gi|223985834|ref|ZP_03635875.1| hypothetical protein HOLDEFILI_03181 [Holdemania filiformis DSM
            12042]
 gi|223962224|gb|EEF66695.1| hypothetical protein HOLDEFILI_03181 [Holdemania filiformis DSM
            12042]
          Length = 1008

 Score =  518 bits (1333), Expect = e-144,   Method: Composition-based stats.
 Identities = 327/1006 (32%), Positives = 511/1006 (50%), Gaps = 46/1006 (4%)

Query: 30   NNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQG 89
              ++         AIA TD N +  A+EF +      I+PI G ++ + +++        
Sbjct: 2    PQLVALAKQAGYEAIACTDENVMHGAMEFWKCCQREQIKPIFGLEILVKIEEETVA---- 57

Query: 90   KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG 149
                     + +L    EG+  L+   SR+           + L  +Q    E  +++  
Sbjct: 58   ---------MTVLARDDEGFGGLMAASSRL-----CDGQDALTLDQIQPYL-EHWVLIVY 102

Query: 150  GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG-YDRYRESQVVQLAYTHE 208
            G  G  +        +    +L   K       Y+ +  +   + + +   + Q+    E
Sbjct: 103  GEGGFAESELIQEDRRGLGDKLGWLKTQLPL-FYMAVSFNDASFWKLKNILLKQVCAAQE 161

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
            +P VA +   +   ED     ++  +  S  ++ K  P V   +            ++  
Sbjct: 162  IPTVALSKIYYGQAEDARLFKIVNGIRLSKTINDKTLPSVNGRYLRTPAEMEQLYDAEDL 221

Query: 269  EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
            +A ++   I        +   P  P              +  L    +AGL+ R      
Sbjct: 222  QASDHIASICNVTMTQAKTTLPAFPC-------PQGVSSKQYLTQLCLAGLKKRRQGQPE 274

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
                    Y +RL +EL+VI  M F  YFLIV DFI++A+K  I VGPGRGS AGS+ AY
Sbjct: 275  D-----PAYLRRLKYELDVILTMHFEDYFLIVWDFIRFARKAGIYVGPGRGSAAGSLVAY 329

Query: 389  ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
             L IT +DPL + LLFERFLNP+R+SMPD D DF  +RRDEVI+YV  KYG + VA I T
Sbjct: 330  VLGITHVDPLEYGLLFERFLNPERISMPDIDTDFPDNRRDEVIQYVAEKYGEKHVAHIAT 389

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
            FG+L AK  LRDVGR L++P  +VD LCK +P      +   AI  + RF +   AD   
Sbjct: 390  FGTLGAKQVLRDVGRVLEIPLREVDMLCKAVPFGVKMTL-QTAIQQNPRFHQMVYADRRY 448

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
              L E + ++EGL RH STHAAGIV     L Q+ P  R   +DL  TQ+ M+ +E+ GL
Sbjct: 449  QELYETALRIEGLPRHVSTHAAGIVFSRAELDQICPTIRIE-NDLLSTQYTMEHLEELGL 507

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            IK DFLGL+ LT++   +  + QR   +++  IP DD +TY LL    T+GIFQLES GM
Sbjct: 508  IKMDFLGLRNLTIIDDIVQRVHQRQ-PLNIMKIPLDDAKTYALLRKVDTVGIFQLESEGM 566

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            +  +  MQP C +DI+A ++L+RPGP++NI  Y   +     +  +HP + P+L+ T GV
Sbjct: 567  KNLIRKMQPACFDDIVATIALFRPGPMENIPEYLRCRTDPSAVHYLHPDLKPILESTYGV 626

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            +IYQEQ+MQ AQ ++G+SL+ ADVLRRAM KK  +E+   ++ FI G  + G  + +A  
Sbjct: 627  MIYQEQIMQTAQKMAGFSLARADVLRRAMSKKKLKELQSLQKEFIGGCIQQGYEEKLANE 686

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++EL+ KFA+YGFNKSH+ AY +++YQ +++K ++P+EF  + +   +    K  ++  +
Sbjct: 687  VYELILKFANYGFNKSHSVAYGLLAYQLSYLKANFPLEFYTSLLNSVIGAEGKTAEYIDE 746

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLED 867
             R+  +QI+ PSVN   V + +    I Y L  IK +G+     ++     + PF    D
Sbjct: 747  CRRHQVQILGPSVNASDVRYLIEGEAIRYPLLGIKNIGSAACMQLLAERQENGPFQDYYD 806

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            F +R+ +++LNR+++E+L+ AGALD F  +R  L  SL+    Y   V +        I 
Sbjct: 807  FVTRMLTRRLNRKMIEALIDAGALDEFHANRQSLRLSLEEAISYGDLV-RIEVGGQVRI- 864

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              + G  S  + +   + E+   R E E+  LGFY   HP+   K   + +  +     +
Sbjct: 865  --DLGLVSKPVMV--MAKEDPIERSEREREALGFYLCSHPILQVKKKFQ-IQTEPLVRLM 919

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            A  +G  I     +   +Q +T+KG  + +    +   + +    P
Sbjct: 920  A--KGGFIEGFVYLQRVRQHRTKKGDLMAFAVGVDETAQIDLVVMP 963


>gi|119900246|ref|YP_935459.1| DNA polymerase III subunit alpha [Azoarcus sp. BH72]
 gi|167016908|sp|A1KCL7|DNAE2_AZOSB RecName: Full=Error-prone DNA polymerase
 gi|119672659|emb|CAL96573.1| DNA polymerase III, alpha subunit, putative [Azoarcus sp. BH72]
          Length = 1064

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 266/1072 (24%), Positives = 432/1072 (40%), Gaps = 107/1072 (9%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---- 60
            +  +P +  L   S+YS L GA     ++ +  A     +AITD  +L  A+        
Sbjct: 1    MA-TPPYAELHCLSNYSFLRGASHPEELVARAWALGYQGLAITDECSLAGAVRAHTGLAE 59

Query: 61   ---------------------KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
                                    A   + + G +  +                     +
Sbjct: 60   LRRDLRAAADAPEASAQDRLLAERAEQFRLVFGAEFRLACGLK----------------L 103

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            VLL     GY  L  L++      + K S R+  + L          ++   + P   A 
Sbjct: 104  VLLAKNRAGYGNLSALITLARQRSE-KGSYRLVRADLD--------AISPAGAVPDCYAL 154

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSL 218
            +   +  + +    F + FG+R ++ ++ H    D     +  +LA    LP +A  +  
Sbjct: 155  WLPDAASSAEDAHWFARRFGERGWLAVELHSGADDAAWLGRTAELAAAAGLPRLAAGDVH 214

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
                      D L A+   T V +       P+     R  +        E LE    +A
Sbjct: 215  MHLRGRRPLQDTLTAIRLGTTVFEAGTALH-PNGERHLRHPLRLARLYPAELLEAAARLA 273

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
              C F L       P+ I    +       + LR +  AGL  R  QG            
Sbjct: 274  LACDFQLDTLRYEYPQEIVPAGE----TPASYLRRETQAGLARRYPQGV------PPAIA 323

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
              ++ EL +I  + +  +FL V D + +A+   I    GRGS A S+  YAL IT++DP 
Sbjct: 324  DNVEQELALIIELGYEPFFLTVYDIVCFARDEGIL-CQGRGSAANSIVCYALGITEVDPA 382

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
            R SLLF RF++ +R   PD D+DF  DRR+ VI+Y+  KYG +R A   T    + + AL
Sbjct: 383  RASLLFGRFISRERDEPPDIDVDFEHDRRETVIQYIYGKYGRDRAALAATVIRYRTRGAL 442

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
            RD GRAL     Q+D L + +            + +         A P V + L+++  L
Sbjct: 443  RDAGRALGFGQPQIDALARSLAWWDKRDQLPARLIE----LGLDPASPRVAKWLDLTGML 498

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
             G  RH S H  G VI   PL +LVP+      +  V Q++ + +E  GL+K D L L  
Sbjct: 499  IGFPRHLSQHVGGFVISRGPLGRLVPIENAAMPERSVIQWDKEDLEALGLLKVDVLALGM 558

Query: 579  LTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            L+++++SL+ +  +RG    L  IP  D  T+ +L    ++G+FQ+ES      L  ++P
Sbjct: 559  LSVIRRSLELVGRRRGAPFALPHIPPKDAATFDMLCAADSVGVFQVESRAQMAMLPRLRP 618

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI------HPLIDPMLKETQGVIIY 691
                D++  V++ RPGPI   +V+    N  +   S          +  +L+ T GV I+
Sbjct: 619  RQFYDLVVQVAIVRPGPIQGDMVHPYLTNRADPAASARTLARLPADVRAVLERTLGVPIF 678

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIF 750
            QEQVM++A++ +G++  EAD LRRAM     K  +++ K++   G    G     A  + 
Sbjct: 679  QEQVMKLAEVAAGFTPGEADQLRRAMASWRQKGHIERFKQKLRDGMKARGHDSDFADALC 738

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
              +  F +YGF +SHAA++A+++Y +AW+K H P  FL   +  +        +  QDAR
Sbjct: 739  RQIEGFGEYGFPESHAASFALLAYASAWLKRHEPEAFLCGLLNSQPMGFYAPAQLLQDAR 798

Query: 811  QFNIQIMPPSVNTPCVDFKVGD----------NRIYYSLAAIKGVGTTTARHIMEASADK 860
            +  +++ P  V     D  + D            +   L  I G     A  + EA A  
Sbjct: 799  RHGVEVRPVDVTASAWDATLEDLPADPDAGRRPAVRLGLREISGFPEAAALRVAEARAAA 858

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            PF    D   R     L RR L+ L  AGAL      R Q    +  +            
Sbjct: 859  PFADTNDLARRA---ALQRRELDLLAAAGALQALAGHRRQAAWQVAGVC----------- 904

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                ++F       +             +     +    GF    HPL + +  L +   
Sbjct: 905  -LQGDLFDAAPPPEAAVALAAP----QEAEELLADYAATGFSLGRHPLALLRARLARGRF 959

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                    T     +R+A +V  +Q+  T +G  + +VT  +         +
Sbjct: 960  LQAAALARTPDRALVRVAGIVTGRQRPGTAQG--VIFVTLEDETGSANVVVY 1009


>gi|90423241|ref|YP_531611.1| error-prone DNA polymerase [Rhodopseudomonas palustris BisB18]
 gi|90105255|gb|ABD87292.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris BisB18]
          Length = 1112

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 246/1070 (22%), Positives = 431/1070 (40%), Gaps = 101/1070 (9%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC---- 63
            +P +  + + +++S L G     + + + +  + P I I D N L   +    +      
Sbjct: 2    TPVYAEIGITTNFSFLRGGSHPQDYVQQASELRLPVIGIADHNTLAGVVRAYSELRNERL 61

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            A   + +IG +L                     P I++       Y RL +L++R     
Sbjct: 62   AHKPRLLIGARLVFIDG---------------TPDILVYPRDRAAYGRLCQLLTRGK-RA 105

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE--KRLLTFKKLFGDR 181
              K    + L  L E     L++L              +  + AE  + L   +    D 
Sbjct: 106  ADKGECHLGLDDLAEFAEGQLLVLA-----------LPHRFEDAEAGRLLARLQGFAADG 154

Query: 182  LYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TV 239
            +++     +RG DR R  ++ QLA    LPL+ATN  L+         DVL  V    T+
Sbjct: 155  VWLAASLLYRGDDRRRLQRLQQLAAQARLPLLATNEVLYHHPARRPLQDVLSCVREKLTL 214

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             S   R     + +LK   EM  +F D P+A+  T+  A R  F L       P      
Sbjct: 215  ESIGTRLEANAERHLKPAQEMARLFRDCPQAIAETMRFAARIQFSLDQLQYQYPNEPVPA 274

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 K  +  L +   AG      +G           ++ L  EL +I +++++ YFL 
Sbjct: 275  G----KTAQRHLEDLTWAGAHKYFPRGISPHL------KKTLRKELRLIRKLRYAHYFLT 324

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D + +A+  NI    GRGS A S   Y L IT ++P+   LLFERF++ +R+  PD D
Sbjct: 325  VHDIVCYARSQNIL-CQGRGSAANSAVCYVLGITAVNPIEIDLLFERFISKERLEPPDID 383

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF   RR+EV++Y+  +YG +R A I T    + ++A+RDVG+ L +       L   +
Sbjct: 384  VDFEHSRREEVMQYIYRRYGRDRAAIIATVIHYRPRSAIRDVGKVLGLTEDVTSALADTV 443

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                   ++   +            +P + R ++++ +L G  RH S H  G V+ +  L
Sbjct: 444  WGSWGRGLNEMQVTQ----AGLDPRNPLIARAIDLASELIGFPRHLSQHVGGYVLTEDRL 499

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDL 598
               VP+      D    +++   ++   ++K D L L  LT ++K  D   A +G +  L
Sbjct: 500  DSYVPIGNAAMDDRTFVEWDKNDVDTLKMMKVDVLALGMLTCIRKCFDLIDAHKGERWAL 559

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            + +P +    Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   
Sbjct: 560  ATVPREVPAVYDMLCRSESLGVFQVESRAQMNMLPRLKPRQFYDLVIEVAIVRPGPIQGD 619

Query: 659  VVYN--NRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            +V+    R+N +E +    P         +  +L +T GV ++QEQ M+IA   + +S  
Sbjct: 620  MVHPYLRRRNAEEPVYYPSPSPQHGDKDELRKVLHKTLGVPLFQEQAMRIAIEAAKFSPE 679

Query: 709  EADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            EA+ LRRAM        + K + + ++     G     A N F+ +  F  YGF +SHAA
Sbjct: 680  EANGLRRAMATFRNVGTIGKFESKMVNNMISRGYDPVFAKNCFDQIKGFGSYGFPESHAA 739

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            ++A + Y ++W+K  +P  F    +  +        +  +DAR   +++    V+     
Sbjct: 740  SFAQLVYVSSWLKHFHPDAFCCGLLNSQPMGFYAPAQIVRDARTNGVEVRAVDVSFSFGQ 799

Query: 828  FKVGD-----NRIYYSLAAIKGVG------------------TTTARHIMEASADKPFDS 864
              + +     + +      I G                       A  I+E    + F S
Sbjct: 800  NTLEERCGRYHALRLGFRQIDGFRCTDSDAAHLRLQVGRPEVEDWAARIVETRRRQRFVS 859

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            LE F     +  L +R L  L  A A    G  R   L ++  +                
Sbjct: 860  LEQFAR---ATALPKRALLLLAEADAFRSIGLDRRAALWAVRRLPDDVA----------L 906

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
             +F                     +     + + +     GHP++  + +  +  +    
Sbjct: 907  PLFEISAAREQPDEAARPLPQMPLAEHVVADYQTIRLSLKGHPMEFLRAMFDRERVVTCA 966

Query: 985  ESVAT-IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               A    G   R A +V+ +Q+  +  G  + ++T  +         +P
Sbjct: 967  AVSALRRNGPRSRCAGVVLVRQRPGSANG--VVFMTLEDETGIANVVVWP 1014


>gi|330859615|emb|CBX69955.1| DNA polymerase III subunit alpha [Yersinia enterocolitica W22703]
          Length = 921

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 336/798 (42%), Positives = 479/798 (60%), Gaps = 25/798 (3%)

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            +++  +M  +F+D+PEAL N+VEIA+RC+  +++           +        E+ L  
Sbjct: 1    MRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYF-----LPQFPTGDMSTEDFLVE 55

Query: 314  KAVAGLEVRLAQGAIAKGYHAQD---YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            K+  GLE RL          AQ    Y +RL+ EL VI +M F GYFLIV +FIQW+K N
Sbjct: 56   KSKQGLEERLEFLFPDPEVRAQKRPAYDERLEIELKVINQMGFPGYFLIVMEFIQWSKDN 115

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD V
Sbjct: 116  GVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLV 175

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P DP   +  +
Sbjct: 176  IEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLE-K 234

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D  
Sbjct: 235  AFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAE 294

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDD 605
             + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R        +D++ IP DD
Sbjct: 295  GNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLDD 354

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV----- 660
             +++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + +V     
Sbjct: 355  KKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFID 414

Query: 661  --YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +         I   H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD+LRRAMG
Sbjct: 415  RKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMG 474

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK   EM KQ+  F  GA   G+   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W
Sbjct: 475  KKNPAEMAKQRSIFEDGAKNQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 534

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYY 837
            +K HYP EF+AA MT +MDN +K+     +  +  ++I+PP +N+    F V D   I Y
Sbjct: 535  LKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVY 594

Query: 838  SLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             + AIKGVG      ++EA  +   F  L D C+RVD+KKLNRR+LE L+ +GA D  G 
Sbjct: 595  GIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSGAFDRLGP 654

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENE 955
             R  L+ SL    K A    K       ++F          + +          +  + E
Sbjct: 655  HRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQIVLDGE 714

Query: 956  QRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +  LG Y +GHP+  Y   + +  G    ++   T RG     A +V++ +   T++G+R
Sbjct: 715  RETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIAARIMVTKRGNR 774

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            IG  T  + +   E   F
Sbjct: 775  IGICTLDDRSGRLEVMLF 792


>gi|315653496|ref|ZP_07906417.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus iners
            ATCC 55195]
 gi|315489187|gb|EFU78828.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus iners
            ATCC 55195]
          Length = 1040

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 317/1024 (30%), Positives = 508/1024 (49%), Gaps = 38/1024 (3%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6    LQNISSFTLLKSPISIEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
            QL I+          G         ++++     GYQ ++ L S + L  + GK+ + + 
Sbjct: 66   QLRIN----------GLINENQNFDLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
            L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116  LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                Y  S V  L+    L LVA  +  ++   D    +VL ++  +  +       +  
Sbjct: 175  SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLQSIDDNQSIRDGYELTLKH 233

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                  +++     S     +   +   ++      V        + K            
Sbjct: 234  VGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFDTSYEF 293

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L + A+ GL+ +  +  I        Y  RL +EL +I  M F+ YFLIV D I +    
Sbjct: 294  LHHLAMTGLQAKFNKHDI-----PAKYLNRLKYELKIIDEMGFNDYFLIVWDVINYCHSI 348

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   +RR+EV
Sbjct: 349  GILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPDNRRNEV 408

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + Y+ +KYG + VAQI++F +  AK  L DVG A       ++     IP   +      
Sbjct: 409  VLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQNAIPKSKSKITLSD 468

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V +     
Sbjct: 469  AYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVGLQNGSL 528

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
              +PVTQ   K++E  GL+K DFLGL  LT+L  +L+ +   G+K+D+  IP DD  T  
Sbjct: 529  -GIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLDDPATIK 587

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  RKN +EK
Sbjct: 588  LFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRRKNREEK 647

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   EM K   
Sbjct: 648  VVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSMEMKKIGV 707

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++ A + G S   A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP +F  A
Sbjct: 708  DFVNRAVQQGHSAVAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYPKQFYVA 767

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTT 849
             +   + + +K+ K+  D +  NI+I  P +N    +F + D   I   L +I G+    
Sbjct: 768  LLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSIIGLRMDF 827

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               IM     +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL S +++ 
Sbjct: 828  VEQIMNL--QRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLASYEDLL 885

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               +      +  +  +F   +    D        + +++ + E E  VLGF     P+ 
Sbjct: 886  ICIK-----MSGGNNVLFQALEPKELD------IKMPSNAQKEEWETSVLGFSPQIDPIL 934

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K G K + +      G ++     ++  +   T+   ++ +  F++  +  + 
Sbjct: 935  AAQIYAKKYGFKPFSDFTFYDEGVSV---GKMMDIKVITTKNNKKMAFAKFNDLHETVDF 991

Query: 1030 NFFP 1033
              FP
Sbjct: 992  VIFP 995


>gi|75907825|ref|YP_322121.1| DNA polymerase III subunit alpha [Anabaena variabilis ATCC 29413]
 gi|75701550|gb|ABA21226.1| intein [Anabaena variabilis ATCC 29413]
          Length = 877

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 306/885 (34%), Positives = 472/885 (53%), Gaps = 56/885 (6%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+  A    AIA+TD   ++ A+E  +   +  I+P
Sbjct: 2   SFVPLHIHSDYSLLDGASQLPELIDQAIALGMKAIAVTDHGVMYGAIELLKICRSKNIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ I   D  K               V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62  IIGNEMYILNGDLAKQERGRPK-----YHQVVLAKNTKGYKNLVKLTTISHLQGVQGKGI 116

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L+E   EGLI+ +    G I +A   N    A K    +K +FGD  Y+ 
Sbjct: 117 FSRPCINKDLLKEYH-EGLIVTSACLGGEIPQAILSNRPDAARKVAKWYKDVFGDDFYLE 175

Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR    +++++A   ++  VATN+S ++S  D EAHD L+ +    ++S+  
Sbjct: 176 IQDHGSQEDRIVNVEIIKIARELDIKFVATNDSHYISCFDVEAHDALLCIQTGKLISEDK 235

Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           R R +   YLK+  EM  +F D    + +   +      +  ++ +  +    I      
Sbjct: 236 RMRYSGTEYLKSGEEMKLLFRDHLTDDVIAEAIATTEEVADKIEPYHIMGEPRIPNYPIP 295

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                +  +   A  GL  +L     ++      YR+RL++EL ++ +M FS YFL+V D
Sbjct: 296 SGHTPDTYVEEVAWQGLLDKL--NRKSRNEVEPVYRERLEYELKMLQQMGFSSYFLVVWD 353

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           +I++A+ NNIPVGPGRGS AGS+ AY + IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 354 YIKFARDNNIPVGPGRGSAAGSLVAYTMGITNIDPVHHGLLFERFLNPERKSMPDIDTDF 413

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           C ++RD+VI YV +KYG ERVAQIITF  L +KA L+DV R L +PY + D++ KLIP  
Sbjct: 414 CIEQRDKVIEYVTDKYGKERVAQIITFNRLTSKAVLKDVARVLNIPYGEADKMAKLIPVV 473

Query: 483 PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
              P  L+ +      +  F+E    DP V   L+++ ++EG  +    HAAG+VI   P
Sbjct: 474 RGKPTKLKVMVSDTTPEPEFKEKYDNDPRVRHWLDMAMRIEGTNKTFGVHAAGVVISADP 533

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
           L ++VP+ ++      +TQ+ M+ +E  GL+K DFLGLK LT++QK++D + ++      
Sbjct: 534 LDEIVPLQKN-NDGSVITQYFMEDLESMGLLKMDFLGLKNLTMIQKTIDLIEEKHGFRID 592

Query: 599 SLI--------------------PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                                  P D  +TY LL +    GIFQLESSGM+Q +  ++P 
Sbjct: 593 PYEITSQERKAQKILAKGEYKTLPKDVQKTYELLESGELEGIFQLESSGMKQIVRDLKPS 652

Query: 639 CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            IEDI ++++LYRPGP+D   I  + NRK+G+E I     +++P+L ET G+++YQEQ+M
Sbjct: 653 NIEDISSILALYRPGPLDAGLIPKFINRKHGRENIDYESQVLEPILNETYGIMVYQEQIM 712

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
           +IAQ ++GY+L +AD+LRRAMGKK   EM KQ+E+FI G++KNG+ K +A  +FE + KF
Sbjct: 713 KIAQDMAGYTLGQADLLRRAMGKKKVSEMQKQQEKFIDGSTKNGVKKQVAEKLFEDMLKF 772

Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE-----MDNVEKIKKFCQDARQ 811
           A+Y  +           +          +E    S+            +   +  Q+  +
Sbjct: 773 AEYCLSYDTEVLTVEYGFVPIGEIVDKGIECSVFSIDSNGIVYTQPIAQWHHRGKQEVFE 832

Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIY---------YSLAAIKGVGT 847
           + ++       T    F   D ++            L  +KG+  
Sbjct: 833 YCLEDGSIIKATKDHKFMTQDGKMLPIDEIFEQELDLLQVKGLPE 877


>gi|329921313|ref|ZP_08277751.1| DNA polymerase III, alpha subunit [Lactobacillus iners SPIN 1401G]
 gi|328934605|gb|EGG31109.1| DNA polymerase III, alpha subunit [Lactobacillus iners SPIN 1401G]
          Length = 1040

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 317/1024 (30%), Positives = 509/1024 (49%), Gaps = 38/1024 (3%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6    LQNISSFTLLKSPISIEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
            QL I+          G         ++++     GYQ ++ L S + L  + GK+ + + 
Sbjct: 66   QLRIN----------GLINENQNFDLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
            L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116  LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                Y  S V  L+    L LVA  +  ++   D    +VL ++  +  +       +  
Sbjct: 175  SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDVFLQEVLQSIDDNQSIRDGYELTLKH 233

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                  +++     S     +   +   ++      V        + K            
Sbjct: 234  VGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFDTSYEF 293

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L + A+ GL+ +  +  I        Y  RL +EL +I  M F+ YFLIV D I +    
Sbjct: 294  LHHLAMTGLQAKFNKHDI-----PAKYLNRLKYELKIIDEMGFNDYFLIVWDVINYCHSI 348

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   +RR+EV
Sbjct: 349  GILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPDNRRNEV 408

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + Y+ +KYG + VAQI++F +  AK  L DVG A       ++   K IP   +      
Sbjct: 409  VLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQKAIPKSKSKITLSD 468

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V +     
Sbjct: 469  AYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVGLQNGSL 528

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
              +PVTQ   K++E  GL+K DFLGL  LT+L  + + +   G+K+D+  IP DD  T  
Sbjct: 529  -GIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNAFNEVKMSGIKLDMDKIPLDDPATIK 587

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  RKN +EK
Sbjct: 588  LFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRRKNKEEK 647

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   EM K   
Sbjct: 648  VVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSMEMKKIGV 707

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++ A + G S + A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP +F  A
Sbjct: 708  DFVNRAVQQGHSASAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYPKQFYVA 767

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTT 849
             +   + + +K+ K+  D +  NI+I  P +N    +F + D   I   L +I G+    
Sbjct: 768  LLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSIIGLRMDF 827

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               IM     +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL S +++ 
Sbjct: 828  VEQIMNL--QRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLASYEDLL 885

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               +      +  +  +F   +    D        + +++ + E E  VLGF     P+ 
Sbjct: 886  ICIK-----MSGGNNVLFQALEPKELD------IKMPSNAQKEEWETSVLGFSPQIDPIL 934

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K G K + +      G ++     ++  +   T+   ++ +  F++  +  + 
Sbjct: 935  AAQIYAKKYGFKPFSDFTFYDEGVSV---GKMMDIKVITTKNNKKMAFAKFNDLHETVDF 991

Query: 1030 NFFP 1033
              FP
Sbjct: 992  VIFP 995


>gi|108804744|ref|YP_644681.1| DNA polymerase III subunit alpha [Rubrobacter xylanophilus DSM 9941]
 gi|108765987|gb|ABG04869.1| DNA polymerase III, alpha subunit [Rubrobacter xylanophilus DSM 9941]
          Length = 1084

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 289/1045 (27%), Positives = 468/1045 (44%), Gaps = 56/1045 (5%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
              F HL   S +S   G  +   +    A     A+A+TD + L+           AG+ 
Sbjct: 2    SGFAHLHARSGFSYGFGVATPEELAGAAARMGMWALALTDRDGLYGVPRLLAACEGAGVS 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PI+G ++                       +VLL +  EGY+ L  L++      + ++ 
Sbjct: 62   PIVGAEV----------------GMEEGGHVVLLAAGMEGYRSLSRLITAYRCSSEDRRR 105

Query: 129  VRICLSWLQEIGTEGLIMLTGG-SSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNL 186
                L  L E   EGL+ LTG    G + R       + A K +   ++ FG   ++  L
Sbjct: 106  PVCPLPVLLE-HAEGLVCLTGAVPFGLLPRLVLSGREKQARKVVGLLREAFGAAGVFAEL 164

Query: 187  QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
               R    R R ++V   A    LP+VATN + +L  ED+  H+VL+A A +        
Sbjct: 165  SDDRTAGSRRRMARVAAFARECGLPVVATNEAAYLRPEDHRLHEVLVA-ASNLTRLPGPG 223

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             R T   +LK    M  +F   PEAL N   +A RC+  +++   +    +        +
Sbjct: 224  YRPTDQLWLKPPGAMRRLFEGYPEALANAALVAERCAGSVRLSGKV---HMPAAVLPEGE 280

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E  L      G            G       +RL  EL  I  +  + YFLI  +  +
Sbjct: 281  TAEGRLARLVGEGARR-------RYGRPGDRVWRRLRRELACIGALGHAAYFLIAHEAKE 333

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
             A++  +PV  GRGS A S+ AY L +T  +PL   LLFERFL+  R   PD D+D   +
Sbjct: 334  IARERGVPV-SGRGSAANSMVAYCLGLTSPEPLGNRLLFERFLHEGRKDPPDIDLDLDSE 392

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP-- 483
             RD V   +  +YG    A   T  ++  + A+R   RAL  P  ++DRL + +P     
Sbjct: 393  LRDGVRNELMGRYGRHGAAVAATAETMSLRGAVRVAARALGHPPEEIDRLSRHVPARFRD 452

Query: 484  ------AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG-- 535
                        +A+ + +              LLE+S +L G    A TH  G+V G  
Sbjct: 453  RDRVYAGIDGWEEALREPAMRGHPLRDRRRHRLLLELSARLCGRLWQAGTHNGGVVFGTA 512

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GV 594
            +R LS+LVP+    +  L   Q++   +E  GL K D LGLK  T L+K+ +  + R G 
Sbjct: 513  ERHLSELVPLEPSGKEGLLRCQYDKDDLEYVGLPKLDLLGLKMHTALRKAGELASARLGE 572

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            +VD   +P  D  TY L+ T  T GIFQLES G       ++P    D++A VSL+RPGP
Sbjct: 573  EVDPYALPPGDGATYALIRTGRTAGIFQLESPGQMSLSTRLKPRRFPDLVAQVSLFRPGP 632

Query: 655  IDNIVVYNNRKNGKEKIVSIHP--LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +   +V         +     P   ++P+L+ T GV+++QEQV+++   ++G+SL+E D+
Sbjct: 633  VRGDLVTPYVNRRNGREPYTVPLEELEPVLRPTYGVMVFQEQVLEVCHRVAGFSLAEGDL 692

Query: 713  LRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +RRAM + +    M + +ERF+  A   G+ +  A  +FE +  F+ YGF+ +H A++A 
Sbjct: 693  VRRAMTRARGPGAMRELRERFVGSAVGRGVPREKAEEVFEWMEGFSVYGFSAAHGASFAE 752

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            I+Y +A+M+ HYP EF    +  +       +    +AR+  + ++PP ++     F V 
Sbjct: 753  IAYASAYMRVHYPAEFFCGLLNSQPMGFYSPRVLLNEARRAGLSVLPPDIHLSGEGFTVE 812

Query: 832  DN--RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +   +   L+  KG+       I+     +PF S  D   R     + R  L  ++ AG
Sbjct: 813  GDGTALRVGLSYCKGLSERAIASIVSEREREPFASAADLYRRT---AVERDSLRDMIRAG 869

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK--HENIFAHEKGTFSDKITLEKFSVEN 947
             LD  G  R +LL     + +  +  ++         + +A  +        +     E+
Sbjct: 870  FLDALG-DRGRLLGEAGRLPEKRRRGDQEEIPPAHPASWWAERETRGGGDAPVGLPLAED 928

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
            +  R E E  VLG     HPL+ Y+  LR++G+   EE+     G  +R+A ++   Q  
Sbjct: 929  ARERMEWE--VLGLNVRRHPLEPYRAALRELGVVPSEEAKGLAHGRRVRVAGLIECLQHP 986

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             TR G  + ++   +     +A  F
Sbjct: 987  PTRSGHPVWFLLIEDERGLLQATVF 1011


>gi|312872348|ref|ZP_07732418.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|312875479|ref|ZP_07735482.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF 2053A-b]
 gi|325911984|ref|ZP_08174386.1| DNA polymerase III, alpha subunit [Lactobacillus iners UPII 143-D]
 gi|311088990|gb|EFQ47431.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF 2053A-b]
 gi|311092171|gb|EFQ50545.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|325476169|gb|EGC79333.1| DNA polymerase III, alpha subunit [Lactobacillus iners UPII 143-D]
          Length = 1040

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 318/1024 (31%), Positives = 509/1024 (49%), Gaps = 38/1024 (3%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6    LQNISSFTLLKSPISVEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
            QL I+          G         ++++     GYQ ++ L S + L  + GK+ + + 
Sbjct: 66   QLRIN----------GLINENQNFDLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
            L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116  LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                Y  S V  L+    L LVA  +  ++   D    +VL ++  +  +       +  
Sbjct: 175  SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLKSIDDNQSIRDGYELTLKH 233

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                  +++     S     +   +   ++      V        + K            
Sbjct: 234  VGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFDTSYEF 293

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L + A+ GL+ +  +  I        Y  RL +EL +I  M F+ YFLIV D I +    
Sbjct: 294  LHHLAMTGLQAKFNKHDI-----PAKYLNRLKYELKIIDEMGFNDYFLIVWDVINYCHSI 348

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   +RR+EV
Sbjct: 349  GILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPDNRRNEV 408

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + Y+ +KYG + VAQI++F +  AK  L DVG A       ++   K IP   +      
Sbjct: 409  VLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQKAIPKSKSKITLSD 468

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V +     
Sbjct: 469  AYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVGLQNGSL 528

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
              +PVTQ   K++E  GL+K DFLGL  LT+L  +L+ +   G+K+D+  IP DD  T  
Sbjct: 529  -GIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLDDPATIK 587

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  RKN +EK
Sbjct: 588  LFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRRKNKEEK 647

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   EM K   
Sbjct: 648  VVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSMEMKKIGV 707

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++ A + G S   A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP +F  A
Sbjct: 708  DFVNRAVQQGHSAAAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYPKQFYVA 767

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTT 849
             +   + + +K+ K+  D +  NI+I  P +N    +F + D   I   L +I G+    
Sbjct: 768  LLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSIIGLRMDF 827

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               IM     +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL S +++ 
Sbjct: 828  VEQIMNL--QRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLASYEDLL 885

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               +      +  +  +F   +    D        + +++ + E E  VLGF     P+ 
Sbjct: 886  ICIK-----MSGGNNVLFQALEPKELD------IKMPSNAQKEEWETSVLGFSPQIDPIL 934

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K G K + +      G ++     ++  +   T+   ++ +  F++  +  + 
Sbjct: 935  AAQIYAKKYGFKPFSDFTFYDEGVSV---GKMMDIKVITTKNNKKMAFAKFNDLHETVDF 991

Query: 1030 NFFP 1033
              FP
Sbjct: 992  VIFP 995


>gi|309804153|ref|ZP_07698231.1| DNA polymerase III, alpha subunit [Lactobacillus iners LactinV
            11V1-d]
 gi|325912830|ref|ZP_08175208.1| DNA polymerase III, alpha subunit [Lactobacillus iners UPII 60-B]
 gi|308163736|gb|EFO66005.1| DNA polymerase III, alpha subunit [Lactobacillus iners LactinV
            11V1-d]
 gi|325477823|gb|EGC80957.1| DNA polymerase III, alpha subunit [Lactobacillus iners UPII 60-B]
          Length = 1040

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 317/1024 (30%), Positives = 509/1024 (49%), Gaps = 38/1024 (3%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6    LQNISSFTLLKSPISIEQLIGSAKKRGYKAIALTDINFTYGLIDFYKMAKSEGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
            QL I+          G         ++++     GYQ ++ L S + L  + GK+ + + 
Sbjct: 66   QLRIN----------GLINENQNFDLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
            L+ LQ+      I+ T      +    F+++  +    +    K+      LY+ +   +
Sbjct: 116  LNKLQKYLGNLHIITTANQHSELCD-LFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                Y  S V  L+    L LVA  +  ++   D    +VL ++  +  +       +  
Sbjct: 175  SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLQSIDDNQSIKDGYELTLKH 233

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                  +++     S     +   +   ++      V        + K            
Sbjct: 234  VGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFDTSYEF 293

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L + A+ GL+ +  +  I        Y  RL +EL +I  M F+ YFLIV D I +    
Sbjct: 294  LHHLAMTGLQAKFNKHDI-----PAKYLNRLKYELKIIDEMGFNDYFLIVWDVINYCHSI 348

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   +RR+EV
Sbjct: 349  GILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPDNRRNEV 408

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + Y+ +KYG + VAQI++F +  AK  L DVG A       ++   K IP   +      
Sbjct: 409  VLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQKAIPKSKSKITLSD 468

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V +     
Sbjct: 469  AYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVGLQNGSL 528

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
              +PVTQ   K++E  GL+K DFLGL  LT+L  +L+ +   G+K+D+  IP DD  T  
Sbjct: 529  -GIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLDDPATIK 587

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  RKN +EK
Sbjct: 588  LFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRRKNKEEK 647

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   EM K   
Sbjct: 648  VVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSMEMKKIGV 707

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++ A + G S + A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP +F  A
Sbjct: 708  DFVNRAVQQGHSASAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYPKQFYVA 767

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTT 849
             +   + + +K+ K+  D +  NI+I  P +N    +F + D   I   L +I G+    
Sbjct: 768  LLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSIIGLRMDF 827

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               IM     +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL S +++ 
Sbjct: 828  VEQIMNL--QRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLASYEDLL 885

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               +      +  +  +F   +    D        + +++ + E E  VLGF     P+ 
Sbjct: 886  ICIK-----MSGGNNVLFQALEPKELD------IKMPSNAQKEEWETSVLGFSPQIDPIL 934

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K G K + +      G ++     ++  +   T+   ++ +  F++  +  + 
Sbjct: 935  AAQIYAKKYGFKPFSDFTFYDEGVSV---GKMMDIKVITTKNNKKMAFAKFNDLHETVDF 991

Query: 1030 NFFP 1033
              FP
Sbjct: 992  VIFP 995


>gi|81301008|ref|YP_401216.1| DNA polymerase III subunit alpha [Synechococcus elongatus PCC 7942]
 gi|81169889|gb|ABB58229.1| DNA polymerase III, alpha subunit / Intein [Synechococcus elongatus
           PCC 7942]
          Length = 870

 Score =  516 bits (1328), Expect = e-143,   Method: Composition-based stats.
 Identities = 292/845 (34%), Positives = 449/845 (53%), Gaps = 29/845 (3%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-IQ 68
           SFV L +HS YSLL+GA  L +++ +      PAIA+TD   ++ A+E  +     G I+
Sbjct: 2   SFVGLHMHSDYSLLDGASQLPDLVARAKELGMPAIALTDHGVMYGAIELLKVCKNQGNIR 61

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ- 127
           PIIG ++ +          + +         ++L    +GYQ L++L S  +L     + 
Sbjct: 62  PIIGNEMYVINSPIDDPNPRVRK-----YHQIVLAKNKKGYQNLVKLTSISHLQGFKGRG 116

Query: 128 ---SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 I    L++   EGLI+ +    G I +A   +   VA +    +++ FG+  Y+
Sbjct: 117 IFARPCIDKEHLEKY-REGLIVTSACLGGEIPQAILQSRPDVARRVAAWYQERFGEDFYL 175

Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +Q H    DR    ++V++A    + LVATN+S F+S  D EAHD L+ +    +V + 
Sbjct: 176 EIQDHGSPEDRIVNVEIVRIAQELGIELVATNDSHFISCFDVEAHDALLCIQTGKLVVED 235

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            R R +   YLK+  EM  +F D    + +   +      +  ++ +  +    I     
Sbjct: 236 KRLRYSGTEYLKSAEEMHQLFRDHLPDDVIAKAIANTLVIASKIEDYNILGEPKIPTFPV 295

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                EE  +   A  GL  RL           + YR RL++E+ ++  M F+ YFL+V 
Sbjct: 296 PDGYNEETYMAEVARQGLAERLNCD--RYEDCEEAYRDRLEYEIKMMHEMGFASYFLVVW 353

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           D+I++A+ NNIPVGPGRGS AGS+ AY + IT+IDP+   LLFERFLNP+R SMPD D D
Sbjct: 354 DYIKFARDNNIPVGPGRGSAAGSLVAYCMGITNIDPVHHGLLFERFLNPERKSMPDIDTD 413

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC D+RD+VI YV  KYG +RVAQIITF  + +KA L+DV R L +PY + DR+ KLIP 
Sbjct: 414 FCIDQRDKVIDYVTKKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEADRMAKLIPV 473

Query: 482 DPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
               P  L+ +  D      F+E    D  V   ++++ ++EG  +    HAAG+VI   
Sbjct: 474 ARGKPAKLKVMISDQTPAPEFKEKYEKDARVKHWVDMALRIEGTNKTFGVHAAGVVISAV 533

Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKV 596
           PL ++VP+ R+      +TQ+ M+ IE  GL+K DFLGL+ LT++QK++D + +     +
Sbjct: 534 PLDEIVPLQRN-NDGQVITQYYMEDIEACGLLKMDFLGLRNLTMIQKAIDLVQETSGQAI 592

Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
           D   +P DD +TY LL      G+FQLESSGMRQ +  ++P  +EDI ++++LYRPGP+D
Sbjct: 593 DPDRLPMDDPKTYQLLAKGDLEGVFQLESSGMRQIVRDLKPSNLEDISSILALYRPGPLD 652

Query: 657 N--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
              I  + NRK+G+E I     ++ P+L ET G+++YQEQ+M+IAQ + GY+L EAD+LR
Sbjct: 653 AGLIPKFINRKHGREAIDYADQMLQPILNETYGIMVYQEQIMKIAQDMGGYTLGEADLLR 712

Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           RAMGKK   EM K +  F+ GA KNG+++ +A  +F+ +  FA+Y               
Sbjct: 713 RAMGKKKMSEMVKHQSTFVEGAKKNGVAEKVAAELFDQMVLFAEYCLAADTEVLTVEYGP 772

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC-----QDARQFNIQIMPPSVNTPCVDFK 829
                     +         +     +          Q+  ++ +        T    F 
Sbjct: 773 IAIGKLVEENIRCQVYCCNPDGYIYSQPIGQWHQRGEQEVIEYELSDGRIIRATADHRFM 832

Query: 830 VGDNR 834
             +  
Sbjct: 833 TEEGE 837


>gi|310814948|ref|YP_003962912.1| error-prone DNA polymerase [Ketogulonicigenium vulgare Y25]
 gi|308753683|gb|ADO41612.1| error-prone DNA polymerase [Ketogulonicigenium vulgare Y25]
          Length = 1060

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 250/1052 (23%), Positives = 439/1052 (41%), Gaps = 86/1052 (8%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA--- 64
            +P++  L + ++++ L GA      + +      PAIA+TD N+L               
Sbjct: 2    TPAYAELCITTNFTFLRGAAHPEEFVLRATELALPAIAVTDWNSLAGVARAWTALRNLRE 61

Query: 65   --------AGI-QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
                    A + + +IG +L +                 +    ++L      Y RL +L
Sbjct: 62   DKDMAHLHAQLPKLLIGTRLIL---------------QDSAIEWLVLPVDIAAYHRLSQL 106

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            ++R  L  + K    +    L +     LI L     G             A  ++   +
Sbjct: 107  LTRGKLRAK-KGECLLSQEDLLDAQDMILIALPPADLG------------TAYAQISAMQ 153

Query: 176  KLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            + F   +Y     R+ G D+        LA     P+VA  + L          DVL  +
Sbjct: 154  RRFPGFVYTGAAPRYDGTDQAWFDLCADLALRASAPMVAVGDVLMHRASRRPVADVLTCL 213

Query: 235  AHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
                T+ +   R     +  LK   +M  +F + P AL  TV+IA R SF L        
Sbjct: 214  REGITIDNIGTRALPNAERRLKGVGDMARLFRNHPAALRRTVQIADRISFDL-----GDL 268

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
            R+   +  +  +  +  L   A AGL  R      +KG     Y+  LD EL+V+A + +
Sbjct: 269  RYDYPDEANDGELPQARLERLARAGLIRR------SKGAAPDRYQGLLDKELSVVAELGY 322

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
            + YFL V D + +A+  +I    GRGS A S+  +AL ITD++P    ++FERF++  R 
Sbjct: 323  APYFLTVHDIVAYARSQDIL-CQGRGSAANSIICWALGITDVEPSMIGMVFERFISRHRR 381

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
              PD D+DF  +RR+EVI+++ ++Y  +R     T    + +AA+R+VG+ + +      
Sbjct: 382  EPPDIDVDFEHERREEVIQWIYDRYTRDRAGLCATVIHFRTRAAIREVGKVMGLRADVTA 441

Query: 474  RLCKLIPNDPAHPVSLQAIAD---DSRFREARLADPSVDRLLEISQKLEGLY-RHASTHA 529
             L   I            + +   +   R        +  ++   + L          H 
Sbjct: 442  ALAGQIWGTSNAGTDGALMREVGLNPDDRRLSQTIALIREIIGFPRHLSQHVGGFFIQHV 501

Query: 530  AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
             G VI    L  L P+      D    +++   I+  G++K D L L  LT ++K+ + L
Sbjct: 502  GGFVITRGRLDALCPISNAAMDDRTCIEWDKDDIDALGILKVDVLSLGMLTCIRKAFEML 561

Query: 590  AQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             ++      L  +P +D  TY +L     +G+FQ+ES      L  M+P+   D++  V+
Sbjct: 562  KKQGAGSYTLDSVPQEDAATYQMLQRADAIGVFQVESRAQMNFLPRMKPEQFYDLVIEVA 621

Query: 649  LYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            + RPGPI   +   Y  R+   E+     P ++ + ++T GV ++QEQ +QIAQ+ +GYS
Sbjct: 622  IVRPGPIQGGMVKPYIRRRQKLEEPEPFGPALEAITRKTLGVPLFQEQALQIAQVGAGYS 681

Query: 707  LSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
              +AD LRR++    +   + + +E F+ G   NG ++ +A   F  +  FADYGF +SH
Sbjct: 682  AEDADKLRRSLASFRRMGTIGQHREIFVQGMIGNGYAREVAERCFGQIEGFADYGFPESH 741

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            AAA+A+++Y ++W+K H+P  F  A +  +        +  +DAR+ N+++ P  VN   
Sbjct: 742  AAAFAMLTYVSSWLKCHHPAIFACALLNSQPMGFYAPAQIVRDAREHNVEVRPICVNHSE 801

Query: 826  VDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
             +  +         +      IKG     A  I  A  +  +  +E    R   +     
Sbjct: 802  WENTLEKRTDGALALRLGFRQIKGFREEDADWIARARGNG-YADVESLWLRAGIRP---A 857

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
            VLE L  A A    G +R   L  +  I+  A             +FA        +   
Sbjct: 858  VLERLAEADAFASLGMTRRDALWDVRAIRAPA----------PLPLFADPLDGEGLREPA 907

Query: 941  EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
                  +       +          HP+++ +P L   G+  +   +       I +  +
Sbjct: 908  VHLPNMHLGEEVVEDYIATRLSLRAHPMELLRPKLP--GLTPHATLLQVPL-RRITVCGL 964

Query: 1001 VVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            V+++Q+  T  G  + ++T  +         +
Sbjct: 965  VITRQRPGTASG--VVFLTLEDETGVSNIVVW 994


>gi|22299599|ref|NP_682846.1| DNA polymerase III subunit alpha [Thermosynechococcus elongatus
           BP-1]
 gi|22295783|dbj|BAC09608.1| DNA polymerase III alpha subunit [Thermosynechococcus elongatus
           BP-1]
          Length = 872

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 304/767 (39%), Positives = 448/767 (58%), Gaps = 24/767 (3%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L +++ +      PAIA+TD   ++ A+E  +      ++P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPDLVARAMELGMPAIALTDHGVMYGAIELLKLCRGKPLKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ +   D  K   + +         V+L    +GY  L +L +  +L   QGK  
Sbjct: 62  IIGNEMYVINGDITKQERKPR------FHQVVLAKNKQGYHNLCKLTTISHLQGFQGKGI 115

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L +   EGLI+ +    G I +A      ++A      +++ FG+  Y+ 
Sbjct: 116 FARPCINKELLAQY-REGLIVTSACLGGEIPQAILQGKPELARSVAAWYQQTFGEDFYLE 174

Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR    ++V++     + ++ATN+S F+S  D EAHD L+ +  + ++S + 
Sbjct: 175 IQDHGSQEDRVVNVELVRIGRELGIKIIATNDSHFISCHDVEAHDALLCIQTNKLLSDEK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           R R +   YLK+ +EM  +F D    E ++  +      +  ++ +         +    
Sbjct: 235 RLRYSGTEYLKSAAEMARLFRDHLPDEVIQEALANTLEVADKIEAYNIFREPQSPEFPVP 294

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                +  L   A  GL  R       +      YRQRL++EL ++ +M FS YFL+V D
Sbjct: 295 PGHTADTYLEQVAWQGLLERFQ--LSDRQQLEATYRQRLEYELKMLQQMGFSNYFLVVWD 352

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           +I++A+ +NIPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 353 YIKYARDHNIPVGPGRGSAAGSLVAYALRITNIDPVHHGLLFERFLNPERKSMPDIDTDF 412

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           C DRR+EVI+YV  KYG +RVAQIITF  + +KA L+DV R L +PYSQ D++ KLIP  
Sbjct: 413 CIDRREEVIQYVTQKYGSDRVAQIITFNRMTSKAVLKDVARVLDIPYSQADQMAKLIPVV 472

Query: 483 PAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
              PV L  +  +      F+E   +DP V R ++++ ++EG  +    HAAG+VI   P
Sbjct: 473 RGKPVKLAVMISEETPSPEFKEKYDSDPVVRRWIDMAMRIEGTNKTYGVHAAGVVIASEP 532

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVD 597
           L QLVP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT+LQK+ +      G ++D
Sbjct: 533 LDQLVPLQRN-NDGAVITQYFMEDLESLGLLKMDFLGLKNLTMLQKTQELIEKNHGQRID 591

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           L  +P DD +TY LL      GIFQLESSGM Q +  ++P  +EDI ++++LYRPGP+D 
Sbjct: 592 LDALPLDDAKTYQLLAEGKLEGIFQLESSGMHQIVRELKPSNLEDISSVLALYRPGPLDA 651

Query: 658 --IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             I  + NRK+G+E I   H L+ P+L ET GV+ YQEQ+M++AQ L+GYSL +AD+LRR
Sbjct: 652 GLIPKFINRKHGREPIQYQHELLKPILSETYGVLCYQEQIMRMAQDLAGYSLGQADLLRR 711

Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
           AMGKK KEEM+K +  FI GA+KNG+   IA  +F+ +  FA+Y  +
Sbjct: 712 AMGKKKKEEMEKHEALFIEGAAKNGVPSAIAQELFKQMLDFAEYCLS 758


>gi|257870428|ref|ZP_05650081.1| DNA polymerase III E [Enterococcus gallinarum EG2]
 gi|257804592|gb|EEV33414.1| DNA polymerase III E [Enterococcus gallinarum EG2]
          Length = 1102

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 319/1029 (31%), Positives = 514/1029 (49%), Gaps = 63/1029 (6%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L   S+YSLL+  + +   +          + + D N L+ ALEF Q+   AGI+P+IG 
Sbjct: 5    LTTLSAYSLLQSTIKIPRYIAAAKKAGYKVLGLADHNVLYGALEFYQQCQNAGIKPVIGV 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
              D     +                + L      GY+ L+ L S   +      S  + L
Sbjct: 65   LFDCTFGTSTMR-----------FPLYLFAKNLSGYRLLMRLSSEKMINGHLDLSEYLTL 113

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGY 192
              L      G++       G               + L  F   F    L++ +Q+    
Sbjct: 114  PDLF-----GIL-----PQGQGFSPDQSEDLAQLSRALTDFVARFDQKSLFLGVQKAAAT 163

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV--VSQKDRPRVTP 250
                     +    H L L A      L + +  A  V+  + + T     +K + + + 
Sbjct: 164  PER------EWFQQHGLELCAYQPVAALEQAELFAVQVMEHIKNGTQIEDFRKAKEQSSE 217

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +YL+  +E++  F +  EAL N   IA  C+  + +H  +LP F  +E +       + 
Sbjct: 218  TYYLEQPAELIQAFGENSEALVNNQRIAEECTLTIPLHQRLLPHFPLEEGE----NAADF 273

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR      L  R+ Q           YRQRLD+EL+VI  M F  YFLI+ D + +A KN
Sbjct: 274  LRKLCFEKLSERITQ-------VTDIYRQRLDYELSVIHTMGFDDYFLIIWDVMDFAHKN 326

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I  G GRGS AGS+ A+ L ITD+DP+ + LLFERFLNP+R +MPD D+D   +RRDE+
Sbjct: 327  EIVTGAGRGSAAGSLVAFVLAITDVDPIEYDLLFERFLNPERYTMPDIDLDIPDNRRDEI 386

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV+ KYG E +AQI TFG++ AK  LRDV R   +  S+ +R  K IPN     +   
Sbjct: 387  LHYVRQKYGQEYMAQIATFGTMAAKMVLRDVSRVFGLSQSEANRWSKAIPNALKMTL-AL 445

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A    ++ RE    +   + +  +++ LEGL RH STHAAG+VI D+ L  LVP+ +   
Sbjct: 446  AYEQSNQLRELATFNERNETMFAVAKVLEGLPRHVSTHAAGVVISDKNLLDLVPLQQGS- 504

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
             ++ +TQF M  +E  GL+K DFLGL+ L+++  +L  + +     V    IP +D    
Sbjct: 505  DEILLTQFTMNDVETVGLLKMDFLGLRNLSIIDNTLRGIKRVTNETVTQKAIPLNDPAVL 564

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  RK G+E
Sbjct: 565  RLFQQGDTAGIFQFESAGIRNVLRKLGPESIEDIAAVNALYRPGPMQNIDTFIRRKKGQE 624

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+V     + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +D+++
Sbjct: 625  KVVYPDAALVPILQNTYGIIVYQEQIMQVASKMAGFSLGQADILRRAISKKKKDVLDEER 684

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              F+ GA  N  S   A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP  F A
Sbjct: 685  RHFVEGAVANHFSAEKAEEVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPGPFFA 744

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTT 848
            A +    +N  K+K++  +A ++ + I+PPS+N     F +  + +I +  +++KG+   
Sbjct: 745  ALLHSVRNNPGKLKEYLNEATRYGVAILPPSINKSGYSFYLQSEKQIRFGFSSVKGIRRD 804

Query: 849  TARHIMEASA-DKPFDSLEDFCSRVDSKK---LNRRVLESLVFAGALDCFGYSRMQLLQS 904
              + I++    +  F SL+ F  R+  K    L    +  L+  GA D    +R Q L  
Sbjct: 805  LIQDILDERKENGTFSSLDQFLLRLHQKNNKWLKEDYIRPLLSIGAFDELVTNRKQALIQ 864

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            L+   +   +     +    ++           +   + +  +   +   E+  LG Y S
Sbjct: 865  LEGKIQNITY-----SGGSLDLLETM------ALKEAEVADYDLEQKLALEEEYLGVYLS 913

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
            GHP+  Y+ + +        + V       +R+   V   ++ +T+KG ++ ++  ++ +
Sbjct: 914  GHPVQQYQKLQQLKQTIAIADLVP---NERVRILFYVRQIREIRTKKGEQMAFLEGTDAS 970

Query: 1025 KEYEANFFP 1033
            KE     FP
Sbjct: 971  KEVSITVFP 979


>gi|312871433|ref|ZP_07731528.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF 3008A-a]
 gi|311093086|gb|EFQ51435.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF 3008A-a]
          Length = 1040

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 319/1024 (31%), Positives = 509/1024 (49%), Gaps = 38/1024 (3%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6    LQNISSFTLLKSPISIEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
            QL I+          G         ++++     GYQ ++ L S + L  + GK+ + + 
Sbjct: 66   QLRIN----------GLINENQNFDLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
            L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116  LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                Y  S V  L+    L LVA  +  ++   D    +VL ++  +  +       +  
Sbjct: 175  SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLQSIDDNQSIRDGYELTLKH 233

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                  +++     S     +   +   ++      V        + K            
Sbjct: 234  VGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFDTSYEF 293

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L + A+ GL+ +  +  I        Y  RL +EL +I  M F+ YFLIV D I +    
Sbjct: 294  LHHLAMTGLQAKFNKHDI-----PAKYLNRLKYELKIIDEMGFNDYFLIVWDVINYCHSI 348

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   +RR+EV
Sbjct: 349  GILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARQQMPDIDLDIPDNRRNEV 408

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + Y+ +KYG + VAQI++F +  AK  L DVG A       ++   K IP   +      
Sbjct: 409  VLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQKAIPKSKSKITLSD 468

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V +     
Sbjct: 469  AYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVGLQNGSL 528

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
              +PVTQ   K++E  GL+K DFLGL  LT+L  +L+ +   G+K+D+  IP DD  T  
Sbjct: 529  -GIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLDDPATIK 587

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  RKN +EK
Sbjct: 588  LFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRRKNKEEK 647

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   EM K   
Sbjct: 648  VVYPDPVLINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSIEMKKIGV 707

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++ A K G S + A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP +F  A
Sbjct: 708  DFVNRAVKQGHSASAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYPKQFYVA 767

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTT 849
             +   + + +K+ K+  D +  NI+I  P +N    +F + D   I   L +I G+    
Sbjct: 768  LLNSNIYDKQKVTKYIMDLKLDNIKITLPDINYSKRNFYISDKGEIVTGLNSILGLRMDF 827

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               IM     +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL S  ++ 
Sbjct: 828  VEQIMNL--QRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLASYKDLL 885

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               +      +  +  +F   +    D        + +++ + E E  VLGF     P+ 
Sbjct: 886  VCIK-----MSGGNNVLFQALEPKELD------IKMPSNAQKEEWETSVLGFSPQIDPIL 934

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K G K + +      G ++     ++  +   T+   ++ +  F++  +  + 
Sbjct: 935  AAQIYAKKYGFKPFSDFTFYDEGVSV---GKMMDIKVITTKNNKKMAFAKFNDLHETVDF 991

Query: 1030 NFFP 1033
              FP
Sbjct: 992  VIFP 995


>gi|170748432|ref|YP_001754692.1| DNA polymerase III, alpha subunit [Methylobacterium radiotolerans JCM
            2831]
 gi|170654954|gb|ACB24009.1| DNA polymerase III, alpha subunit [Methylobacterium radiotolerans JCM
            2831]
          Length = 1096

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 254/1064 (23%), Positives = 436/1064 (40%), Gaps = 93/1064 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS---------ALEFSQK 61
            +  L V +++S L GA      + + A+    AI I D N +           ALE    
Sbjct: 8    YAELAVTTNFSFLHGAAHPQEFVAQAASYGLEAIGIADRNTVAGVVRAHAAARALE---- 63

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
                                 +++    +         V      E + RL  L++    
Sbjct: 64   ----------------PQGTAIRILPGVRLVTEEGFEAVTYPMDREAWGRLCRLLTLGNR 107

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                K   R   + + E  +EG + +    +  +   F      +A             R
Sbjct: 108  R-VRKGDCRFAFAEMLE-ASEGQMFIAMPPARRLPEGFRARLEALAAAA--------PGR 157

Query: 182  LYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TV 239
             ++      RG +R R   + +L      P+VA +++L+   +     DV+  +     +
Sbjct: 158  TFLGASHTRRGDERRRLGLLAELGAASGAPMVAVSDALYHHPDRRPLQDVVTCIREGCRI 217

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                 R     + +LK   EM  +F+D PEAL  TVEIA+ C+F L       P      
Sbjct: 218  EDAGYRLEANAERHLKPPPEMARLFADHPEALVRTVEIAQACAFDLAQLRYEYPDEPVPP 277

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 +  +  L  K       R A      G         L  EL +IA+M ++ YFL 
Sbjct: 278  G----RTPQEYLEEKTWERARWRYA------GEVPDAVAATLREELRLIAKMDYARYFLT 327

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            + D +++A+   I    GRGS A S   + L IT +DP +  LLF RF++ +R   PD D
Sbjct: 328  LFDVVEFARGRGIL-CQGRGSAANSAVCFCLGITAVDPSKHRLLFARFISENRGEPPDID 386

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +DF  +RR+EVI+++  +YG ER A   T    + + A+R+VG+ L +       +   +
Sbjct: 387  VDFEHERREEVIQHLYARYGRERAALCATVIHYRPRMAIREVGKVLGLTEDVTAAIADTV 446

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                   +  + +    R       +P++ + L+++ +L G  RH S H  G V+    L
Sbjct: 447  WGSWGTGMPDRHV----REAGLDPENPAIRQALDLAHQLIGFPRHLSQHVGGFVLTRGRL 502

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV--KVD 597
             + VP+     +D    +++   I+  GL+K D L L  LT L++ LDFL +        
Sbjct: 503  DETVPVGNGAMADRTFIEWDKDDIDAIGLMKVDVLALGMLTCLKRGLDFLERDHGTLYAT 562

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ +P DD  TY +L    ++G+FQ+ES      L  ++P    D++  V++ RPGPI  
Sbjct: 563  LADLPQDDPATYAMLAKADSVGVFQVESRAQMSMLPRLKPKEFYDLVVQVAIVRPGPIQG 622

Query: 658  IVVYN----NRKNGKEKIVSIHP------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             +V+            +  + HP       +  +L++T GV ++QE  MQIA   +G++ 
Sbjct: 623  DMVHPYLRRRSGIDPVEYPAPHPDHGPADELKEVLQKTYGVPLFQEHAMQIAITAAGFTP 682

Query: 708  SEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            +EAD LRRAM        +    ++F+ G ++ G  K  A   F  +  F+ YGF +SHA
Sbjct: 683  AEADGLRRAMATFRHVGSIGGFADKFVGGMTRRGYPKDFAERCFAQIRGFSTYGFPESHA 742

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            A++A++ Y +AWMK  +P  FLAA +  +     +  +  +DAR   +++    VN    
Sbjct: 743  ASFALLVYASAWMKCRHPDVFLAAILNAQPMGFYQPAQLVRDARAHGVEVRGVCVNASDW 802

Query: 827  DFKVGDN------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
            D  +          +   L A++G+     R ++   A+  + S+E   +   S  L R 
Sbjct: 803  DCTLEPGGNPALHAVRIGLRAVRGLPEAAMRRLVRLRANG-YASIEGLQA---SLALPRN 858

Query: 881  VLESLVFAGALDCFGYSRMQLLQSL---------DNIQKYAQWVEKNRTNKHENIFA-HE 930
             LE L  A A    G  R   L  +            +        +  +    +FA H 
Sbjct: 859  ALERLAEADAFRSLGLDRRAALWMVRTLEGTSARKAARADPSERRAHLLDAPLPLFAWHS 918

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE--SVA 988
                              S     +    G    GHP+  ++  L ++G          A
Sbjct: 919  DDGLFRHEPAVDLPALAPSEAVAEDYSATGLSLQGHPVAFFRGRLARIGAIPARAHLDPA 978

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +G  + +A +V+ +Q+  T KG  + ++T  +         +
Sbjct: 979  LPQGARVTVAGLVLIRQRPGTAKG--VVFLTLEDETGIANVIVW 1020


>gi|227549925|ref|ZP_03979974.1| error-prone DNA polymerase [Corynebacterium lipophiloflavum DSM
            44291]
 gi|227078021|gb|EEI15984.1| error-prone DNA polymerase [Corynebacterium lipophiloflavum DSM
            44291]
          Length = 1042

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 280/1036 (27%), Positives = 456/1036 (44%), Gaps = 100/1036 (9%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P F  L   SSYS L+GA     ++ +       A+A+ D +  + A++F++ A  A
Sbjct: 46   SHAP-FAELHAVSSYSFLDGASEPEEMVRRARDLGITALALLDRDGFYGAVKFAEAAAEA 104

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            GI  + G +L +  +                  + +L    EGY+ L  L++   ++ + 
Sbjct: 105  GIDTVFGAELTLGDRV-----------------LPVLAKGPEGYRHLSHLIAAARMITRE 147

Query: 126  KQSVRI-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            K +V    L  +        I+L G                     +    +LFG  +  
Sbjct: 148  KDAVSYPPLELIAHELAGTCIVLAG---------------WQWVDDIDHLVELFGGNVVR 192

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
              +     +     + +       +P + +      + +D        A+A    ++   
Sbjct: 193  EYEVSMTPEDADHHRALD--DYPHVPAIVSAMPAAATRDDARLAAAKRALARRDCLNDAH 250

Query: 245  RPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                    ++L++  ++ ++     + +   + IA +C+F L + AP LPR+      D 
Sbjct: 251  AHLHPMGANWLRSAEQIEAMLPGAQDKIATALAIAAQCAFTLNLVAPELPRYPTPTGFD- 309

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E + LR+  +AG ++R A               ++D+EL VI  + F GYFLIV D 
Sbjct: 310  ---EMSWLRHITLAGAQLRYA---TRPDETRAKAMSQIDYELGVIEELNFPGYFLIVHDL 363

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +A++ NI    GRGS A S   +AL IT+ +P+   LLFERFL+PDR   PD DID  
Sbjct: 364  VDFARRENIL-CQGRGSAANSAVCFALGITNAEPISAGLLFERFLSPDRDGPPDIDIDIE 422

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RR+EVI+Y   +YG +  AQ+    + + K A+RD  RAL       D   K I   P
Sbjct: 423  SGRREEVIQYAYERYGRDNAAQVANVITYRTKGAIRDAARALGYAQGAADSWSKGISRPP 482

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                                     + + +++ +L+G  RH   H+ G+VI DRP++ +V
Sbjct: 483  -------------------------EGVEKLASQLKGQPRHLGIHSGGMVICDRPIADVV 517

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIP 602
            P+      +  V Q++      AGL+KFD LGL  L  L   +D +    G +V+L  + 
Sbjct: 518  PVEWARMENRSVVQWDKDDCASAGLVKFDLLGLGMLEALHHMIDLVRDTAGREVNLWELD 577

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660
              D   Y +L     +G+FQ+ES      L  ++P C  D++  V+L RPGPI   ++  
Sbjct: 578  VADARVYEMLCRADAVGVFQVESRAQLSTLPRLKPRCFFDLVVEVALIRPGPIQGGSVHP 637

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R++GKE IV  HP+++  L +T G+ ++QEQ+MQIA   +G+S  EAD LRRAM  K
Sbjct: 638  YLRRRDGKEAIVYDHPVLEKSLGKTLGIPLFQEQLMQIAVDAAGFSGREADALRRAMGSK 697

Query: 720  KIKEEMDKQKERFISGASKNGI-SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            +  E+M + KERF  G          +A  ++  +  FA YGF +SH+ ++A + + +AW
Sbjct: 698  RSPEKMAQLKERFFDGCWATNRIDHDVAETLWAKIVAFAAYGFPESHSQSFASLVFFSAW 757

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYY 837
             K +YP +F    +  +       +   QDAR+  I+++P SVN    +    DN  I  
Sbjct: 758  FKCYYPAQFCVGLLRAQPMGFYSPQSLIQDARRHGIEVLPVSVNDSGREAICVDNATIRV 817

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  IKG+G   A  I  A   +PF  + D   R D   L+   +E+L  AGALDCFG  
Sbjct: 818  GLNLIKGLGDKAADRIEAA---QPFRDIPDLSRRAD---LSVEHVEALARAGALDCFGVD 871

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R Q L         A      R      + A         I        N+      +  
Sbjct: 872  RRQALWQ-------AGVAATEREGMLPGLSA---------IEAPALPGMNAFELMVADIG 915

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
              G      P+++ +  LR  G+           G  +R+A +V  +Q+ +T  G  + +
Sbjct: 916  ATGVTHDKQPMELLRERLRADGLVTAAGLKQVEDGTRVRVAGVVTHRQRPRTASG--VTF 973

Query: 1018 VTFSEPAKEYEANFFP 1033
                +          P
Sbjct: 974  FGMEDETGLINVVVSP 989


>gi|222151616|ref|YP_002560772.1| DNA polymerase III alpha chain [Macrococcus caseolyticus JCSC5402]
 gi|222120741|dbj|BAH18076.1| DNA polymerase III alpha chain [Macrococcus caseolyticus JCSC5402]
          Length = 1051

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 315/1031 (30%), Positives = 512/1031 (49%), Gaps = 99/1031 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL VHS+Y LL   + ++ ++ ++   ++ A+A+TD N LF    F +   AA I+PII
Sbjct: 6    VHLNVHSAYDLLHSTVEIDALVTRVTELKEHAVALTDFNVLFGVQSFYKACIAADIKPII 65

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ +                      V L     GY  LI+L SR+ L    K     
Sbjct: 66   GMEICVTDGLKQL-------------RAVCLARNNTGYVNLIKLSSRIQL----KGVELT 108

Query: 132  CLSWLQEIGTEGLIML--------TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             L WL +  + G+I++        +  + G        NSS  A+K            +Y
Sbjct: 109  PLKWLSQYQS-GIIVIFKSITESESHFTQGIESYYICHNSSLDAKK------------VY 155

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +                               + L+L     +  +VL A+  +  +  +
Sbjct: 156  IE------------------------------DVLYLESSGVQHLEVLNAIEENKKLPLE 185

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
               R+            +       E L+ T EIA +C+  +  H          +    
Sbjct: 186  MV-RIKAGTAYMKDDVQLIDLKIPQEYLDRTHEIADQCNVDITKH-----HATMPKFPVE 239

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                +  L                       + Y QRL +E +VI +M ++ YFLIV D 
Sbjct: 240  GYSSDAYLMKLLQEKKREIPHFD--------ERYEQRLRYEYDVITQMGYADYFLIVGDL 291

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            IQ+AK+++I VGPGRGS  GS+ +Y L IT++DP++++LLFERFLNP+R++MPD DIDF 
Sbjct: 292  IQYAKEHDILVGPGRGSSGGSLISYVLGITEVDPVQYNLLFERFLNPERVTMPDIDIDFE 351

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              +RD+VI+Y  +KYG   V+ I+TFG L A+A +RD GR LQ   +++ ++  LIP   
Sbjct: 352  DTKRDQVIQYAVDKYGKYNVSGIVTFGHLNARAVMRDTGRILQFSDAELKKISTLIPKRV 411

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +    + +D  F      D    +  +I+  LEGL R+ STHAAG++I D+ L+  V
Sbjct: 412  GITLDDMKMDED--FMRFINEDDRRKQWFDIAYALEGLPRNTSTHAAGVIIHDQLLTDYV 469

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIP 602
            P+       + +TQ+ M  +E  GL+K DFLGL+ L++++  +D +  Q   ++DL+ +P
Sbjct: 470  PI--IEGDSVSLTQWTMTEVESIGLLKIDFLGLRNLSIIRNVMDQVRIQFNQQLDLNTLP 527

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD + Y LL    T GIFQLES G+R  L  ++P    DI+A+++LYRPGP++ I VY 
Sbjct: 528  LDDPKVYTLLAQGDTTGIFQLESEGIRNVLRNLKPSHFNDIVAVLALYRPGPMEQIPVYI 587

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R++G + +  IH  +  +LK+T GVIIYQEQ+MQIA   +G+S  EAD+LRRAM KK  
Sbjct: 588  ERRHGAQSVDYIHDDLKAILKDTFGVIIYQEQIMQIANQFAGFSYGEADILRRAMSKKDM 647

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
              +  +KE FI G+   G  K  A  I+EL+ KFA+YGF K+HA AYA I+Y   ++K H
Sbjct: 648  SVLLTEKEHFILGSVNKGYDKQTAEAIYELILKFANYGFPKAHAVAYAKIAYYMLYLKVH 707

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP  F  A ++ ++ +  K K+   + ++  I I    +N     ++   + I  +L  I
Sbjct: 708  YPNIFYTAILSNQIGSEHKTKEIIDEVKKRGIPIYAADINKAHWYYRTYKDGILNALGVI 767

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KG+G  + + I++A     F  + DFC+R+ S+  ++ +LE+L+ AG  D FG++R  LL
Sbjct: 768  KGLGYKSVQDIIDARKQGSFKDIYDFCARIPSRIASKPLLEALIHAGCFDSFGHTRATLL 827

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
             SLD I    +   +   +  E++        + K         +   + E E+  LGFY
Sbjct: 828  ASLDMIID-VERTNEGEESFLESL------GLNKKKDYIIHEEMSDMKKAEYEKAYLGFY 880

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             + HP++      + +      +    +  + + +   +   ++ +T+ G  + ++   +
Sbjct: 881  LTNHPVE---SRFKALQYLPLYKIAQRLNQHYMLI--FIDEVRRIRTKNGQPMAFIKGFD 935

Query: 1023 PAKEYEANFFP 1033
                 +   FP
Sbjct: 936  GTDNIDIVCFP 946


>gi|56751907|ref|YP_172608.1| DNA polymerase III subunit alpha [Synechococcus elongatus PCC 6301]
 gi|56686866|dbj|BAD80088.1| DNA polymerase III alpha subunit [Synechococcus elongatus PCC 6301]
          Length = 870

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 292/845 (34%), Positives = 449/845 (53%), Gaps = 29/845 (3%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-IQ 68
           SFV L +HS YSLL+GA  L +++ +      PAIA+TD   ++ A+E  +     G I+
Sbjct: 2   SFVGLHMHSDYSLLDGASQLPDLVARAKELGMPAIALTDHGVMYGAIELLKVCKNQGNIR 61

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ- 127
           PIIG ++ +          + +         ++L    +GYQ L++L S  +L     + 
Sbjct: 62  PIIGNEMYVINSPIDDPNPRVRK-----YHPIVLAKNKKGYQNLVKLTSISHLQGFKGRG 116

Query: 128 ---SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 I    L++   EGLI+ +    G I +A   +   VA +    +++ FG+  Y+
Sbjct: 117 IFARPCIDKEHLEKY-REGLIVTSACLGGEIPQAILQSRPDVARRVAAWYQERFGEDFYL 175

Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +Q H    DR    ++V++A    + LVATN+S F+S  D EAHD L+ +    +V + 
Sbjct: 176 EIQDHGSPEDRIVNVEIVRIAQELGIELVATNDSHFISCFDVEAHDALLCIQTGKLVVED 235

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            R R +   YLK+  EM  +F D    + +   +      +  ++ +  +    I     
Sbjct: 236 KRLRYSGTEYLKSAEEMHQLFRDHLPDDVIAKAIANTLVIASKIEDYNILGEPKIPTFPV 295

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                EE  +   A  GL  RL           + YR RL++E+ ++  M F+ YFL+V 
Sbjct: 296 PDGYNEETYMAEVARQGLAERLNCD--RYEDCEEAYRDRLEYEIKMMHEMGFASYFLVVW 353

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           D+I++A+ NNIPVGPGRGS AGS+ AY + IT+IDP+   LLFERFLNP+R SMPD D D
Sbjct: 354 DYIKFARDNNIPVGPGRGSAAGSLVAYCMGITNIDPVHHGLLFERFLNPERKSMPDIDTD 413

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC D+RD+VI YV  KYG +RVAQIITF  + +KA L+DV R L +PY + DR+ KLIP 
Sbjct: 414 FCIDQRDKVIDYVTKKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEADRMAKLIPV 473

Query: 482 DPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
               P  L+ +  D      F+E    D  V   ++++ ++EG  +    HAAG+VI   
Sbjct: 474 ARGKPAKLKVMISDQTPAPEFKEKYEKDARVKHWVDMALRIEGTNKTFGVHAAGVVISAV 533

Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKV 596
           PL ++VP+ R+      +TQ+ M+ IE  GL+K DFLGL+ LT++QK++D + +     +
Sbjct: 534 PLDEIVPLQRN-NDGQVITQYYMEDIEACGLLKMDFLGLRNLTMIQKAIDLVQETSGQAI 592

Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
           D   +P DD +TY LL      G+FQLESSGMRQ +  ++P  +EDI ++++LYRPGP+D
Sbjct: 593 DPDRLPMDDPKTYQLLAKGDLEGVFQLESSGMRQIVRDLKPSNLEDISSILALYRPGPLD 652

Query: 657 N--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
              I  + NRK+G+E I     ++ P+L ET G+++YQEQ+M+IAQ + GY+L EAD+LR
Sbjct: 653 AGLIPKFINRKHGREAIDYADQMLQPILNETYGIMVYQEQIMKIAQDMGGYTLGEADLLR 712

Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           RAMGKK   EM K +  F+ GA KNG+++ +A  +F+ +  FA+Y               
Sbjct: 713 RAMGKKKMSEMVKHQSTFVEGAKKNGVAEKVAAELFDQMVLFAEYCLAADTEVLTVEYGP 772

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC-----QDARQFNIQIMPPSVNTPCVDFK 829
                     +         +     +          Q+  ++ +        T    F 
Sbjct: 773 IAIGKLVEENIRCQVYCCNPDGYIYSQPIGQWHQRGEQEVIEYELSDGRIIRATADHRFM 832

Query: 830 VGDNR 834
             +  
Sbjct: 833 TEEGE 837


>gi|227505308|ref|ZP_03935357.1| error-prone DNA polymerase [Corynebacterium striatum ATCC 6940]
 gi|227198106|gb|EEI78154.1| error-prone DNA polymerase [Corynebacterium striatum ATCC 6940]
          Length = 1013

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 277/1040 (26%), Positives = 442/1040 (42%), Gaps = 99/1040 (9%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              S +F  L   SSYS L+GA     ++ +        +A+ D +  +  ++F++ A   
Sbjct: 8    ASSVAFAELHAVSSYSFLDGASEPEELVARAVELGLCGLALVDKDGFYGLMKFAEAAARV 67

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G+  + G +L +                     + +L  T EGY+RL  L+++  +    
Sbjct: 68   GLPAVFGAELSLSDAP-----------------LTVLARTPEGYRRLSRLIAQARMDAGV 110

Query: 126  KQSVRI-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            K  V    L  + E   +  + L G               +  +K     +++  D + +
Sbjct: 111  KDEVAYPPLGEIAERLQDHCLFLVG--------------WEWLDKIDHLLERIKIDSIVL 156

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA-VAHSTVVSQK 243
                    +         L   + L  +AT      + +         A     ++    
Sbjct: 157  EYACTMTPEDA--DHYAALDRYNGLRAIATARPAAATRQQARLAGAKRALARRQSLEQAA 214

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                     +L++  +M  +F D PE +  TV +   CSF     AP LP F   +    
Sbjct: 215  PDAHPMGAGWLRSGEQMAQLFPDRPELIAETVAVLSECSFTWDALAPNLPDFEVPDG--- 271

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E   L +      E R A          +   +++ +EL VI ++ F GYFLIV D 
Sbjct: 272  -YTEMTWLEHLTWERAEERYA---SRPADVQERAWKQIAYELGVIEQLTFPGYFLIVCDL 327

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + + K++NI    GRGS A S   +AL IT+ +P+   LLFERFL+PDR   PD DID  
Sbjct: 328  VDFCKRSNIL-CQGRGSAANSAVCFALGITNAEPISAGLLFERFLSPDRDGPPDIDIDIE 386

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RR+EVI+YV  KYG ER AQ+    + + K A RD  RAL  P    D   K +   P
Sbjct: 387  SGRREEVIQYVYEKYGRERAAQVANVITYRRKGATRDAARALGYPQGSADSWSKGLSQPP 446

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                                       +++++++  G  RH   H+ G+V+ DRP++ +V
Sbjct: 447  G-------------------------DVVKLAEQFLGQPRHLGIHSGGMVLCDRPIADVV 481

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            PM         V Q++      AGL+KFD LGL  L  L    D + +    KV+L  + 
Sbjct: 482  PMEWARMEKRSVLQWDKDDCAAAGLVKFDLLGLGMLEALHHMQDLVEETTGHKVNLWELD 541

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660
              + E Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  
Sbjct: 542  LAEKEVYDMLCRADAVGVFQVESRAQLSTLPRLKPRKFFDLVVEVALIRPGPIQGGSVHP 601

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            Y  R++GKE +   HP+++  L +T G+ ++QEQ+MQIA   +G+S +EAD LRRAMG K
Sbjct: 602  YLRRRDGKEAVTYDHPVLEKSLGKTLGIPLFQEQLMQIAVDAAGFSGAEADDLRRAMGSK 661

Query: 721  IKEEMDKQKERFISG--ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
                      +      A  NGI    A  ++  +  FA YGF +SH+ ++A + Y +AW
Sbjct: 662  RSPARMAAIRQRFYDGLAQTNGIVGETADKLWNKIVAFAAYGFPESHSQSFASLVYFSAW 721

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN--TPCVDFKVGDN--- 833
            MK HYP +F    +  +       +   QDAR+  + ++P  VN         V D    
Sbjct: 722  MKYHYPAQFCVGLLRAQPMGFYSPQSLIQDARRHGVAVLPLDVNASGCQARAVVQDGGEV 781

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             I   L  IKG+G   A+ I +A A  PF  + D   R D   L+   +E+L  AGALDC
Sbjct: 782  AIRLGLNLIKGLGEKAAQRIEDACAQAPFQDIADLSRRAD---LSVEHVEALAGAGALDC 838

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
            FG SR Q L         A      R      + A         I+       ++     
Sbjct: 839  FGLSRRQALWQ-------AGVAATERAGMLPGLSA---------ISAPSLPGMSAFELMA 882

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            ++    G      P+++ +  L    +    +      G  +R+A +V  +Q+ +T  G 
Sbjct: 883  SDVASTGVTHDKQPMELVRAALNDAHVCTAAQLRQVPDGTRVRIAGIVTHRQRPQTAAG- 941

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
             + ++   +          P
Sbjct: 942  -VIFLGLEDETGLMNVMVSP 960


>gi|149195118|ref|ZP_01872210.1| DNA polymerase III subunit alpha [Caminibacter mediatlanticus TB-2]
 gi|149134831|gb|EDM23315.1| DNA polymerase III subunit alpha [Caminibacter mediatlanticus TB-2]
          Length = 1016

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 344/903 (38%), Positives = 521/903 (57%), Gaps = 36/903 (3%)

Query: 157  RAFFFN--SSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVAT 214
            +           A      +K  F   L++ ++R +  +   E+ ++ L+    +PL+A+
Sbjct: 16   KNILKGAKGYDKAINIASIYKNDFK-NLFLEIRRDKKEENLIENDLITLSKETNIPLIAS 74

Query: 215  NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENT 274
             N  +L++EDY   D L  +  +       R     + YLK++ E   +F DLPEALEN 
Sbjct: 75   TNIFYLNKEDYIYKDALECIESNKQFDDVHREYDIGEFYLKSKEEYEELFKDLPEALENN 134

Query: 275  VEIARRCSFILQ----VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
              +      I             +   K+       +      K   GL+ RL +     
Sbjct: 135  KVLEEINLEIPLGNPTPPTFKFTKEYAKKEGLEIDSDVEYFEYKCKEGLKKRLKKIP--- 191

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN---------NIPVGPGRGSG 381
                ++Y++RL++E+++I +MKF GY LIV DFI +AK            IPVGPGRGS 
Sbjct: 192  KELHEEYKKRLEYEIDIIKKMKFPGYMLIVWDFINYAKDPSRHLRGDGNKIPVGPGRGSA 251

Query: 382  AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
            AGS+ AYAL IT+IDP+++ LLFERFLNP+R+SMPD D+DFCQ+RR+EVI YVQ KYG E
Sbjct: 252  AGSLVAYALEITNIDPIKYGLLFERFLNPERVSMPDIDVDFCQERREEVIEYVQKKYGKE 311

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
             VAQ++TFGSL AK  LRD+ R   + YS  D+  KLIP+     +       + + +E 
Sbjct: 312  NVAQVVTFGSLLAKGVLRDIARIFGIEYSTADKFVKLIPDKLGITLKEAK-ELEPKIQEI 370

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR-DVRSDLPVTQFNM 560
               +P  +RL    + LEGL R+   HAAG+VI D  L +  P+Y+ D   D   TQ+++
Sbjct: 371  VNEEPLYERLYSFGEALEGLKRNTGKHAAGVVISDTKLWEKSPLYKQDENDDFHTTQYSL 430

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYHLLTTKGTLG 619
             ++E   LIKFDFLGLKTLT++ K++  + Q     +D+  +  DD + + L+ +  TLG
Sbjct: 431  NYLEPVDLIKFDFLGLKTLTVIDKAIKNIKQNQNKDIDIDDLSLDDEKVFKLIQSGKTLG 490

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL 677
            +FQ+ES GM+   + ++P+  ED+IA+++LYRPGP+D  +   Y  RK+G+++I      
Sbjct: 491  LFQIESDGMQDLAKRLKPENFEDVIAMLALYRPGPMDAGMLDDYIERKHGRKEISYFFDE 550

Query: 678  ----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                + P+LK T GVI+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M K  E F 
Sbjct: 551  FEEVLKPILKPTYGVIVYQEQVMQIVQAIGGFSLGEADIIRRAMGKKKADLMAKYAEEFA 610

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            + A+K G S   A ++F L+ KFA YGFNKSH+AAYA+I+YQTA++KT+YP EF A+ ++
Sbjct: 611  TRAAKRGFSYENAKSLFNLIEKFAGYGFNKSHSAAYAMITYQTAFLKTYYPTEFFASLLS 670

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
             E DN EKI K+  +A+   I+++PP VN    +F    N+I + L+AIKGVG+     I
Sbjct: 671  YEADNTEKIAKYIDEAKSMQIEVLPPDVNKSNYEFTPVKNKILFGLSAIKGVGSKAIESI 730

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
            +    ++PF  LEDF  ++D+ K+N++VLE L+ +GA+D FGYSR  LLQ+L+N+ ++ +
Sbjct: 731  V---TNRPFSDLEDFILKIDTSKVNKKVLEQLIKSGAMDSFGYSRKTLLQNLENMLEFKK 787

Query: 914  WV--EKNRTNKHENIFAH--EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             +   KN  N   ++FA   E+    +K+ +      ++    + E   LGFY S HPLD
Sbjct: 788  RIEDRKNAINHKNSLFADIVEENEVEEKLEINITDEFDTKTLLDGEYETLGFYVSAHPLD 847

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
             YK  ++K+      E    I G        V S + + ++KG++   V+  +   ++E 
Sbjct: 848  PYKEEIQKIKYNLSSEIEEII-GKEALFIGKVESMKVRISKKGNKFAIVSIMDYHGKFEV 906

Query: 1030 NFF 1032
              F
Sbjct: 907  MVF 909


>gi|182418120|ref|ZP_02949420.1| DNA polymerase III subunit alpha [Clostridium butyricum 5521]
 gi|237666184|ref|ZP_04526171.1| DNA polymerase III subunit alpha [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377938|gb|EDT75478.1| DNA polymerase III subunit alpha [Clostridium butyricum 5521]
 gi|237658274|gb|EEP55827.1| DNA polymerase III subunit alpha [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 702

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 267/703 (37%), Positives = 413/703 (58%), Gaps = 23/703 (3%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +E    FVHL +H+ YSLL+G+  +  ++ +       +IAITD   ++  ++F + A  
Sbjct: 1   MENEKKFVHLHLHTEYSLLDGSGKIKKLMKQTKELGMDSIAITDHGVMYGLVDFFKAAEE 60

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            GI+ I+GC++ +  +         +    +   +VLLV    GYQ L+++VS   + + 
Sbjct: 61  YGIKAILGCEVYVAAKSMHIKQPDKEN---STHHLVLLVKNEIGYQNLMKIVSMASI-EG 116

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                RI   +L +  +EG+I L+    G +      ++ + A+K  L +K +F D  Y+
Sbjct: 117 FYYKPRIDHEYL-KNHSEGIIALSACLGGEVQSDLLNDNYEKAKKDALMYKDIFKDGFYL 175

Query: 185 NLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +Q H   ++ + +++ ++LA    +PLVATN+  ++ +ED ++HD+LM +  +  V   
Sbjct: 176 EIQNHGMEEQKKVNELNIKLAEETGIPLVATNDVHYIKKEDSKSHDILMCIQTAKTVDDP 235

Query: 244 DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           +R R  +   YLK+  EM  +FS +PEALENTV+IA  C+F  + H   LP+F   E  D
Sbjct: 236 NRRRYPSDQFYLKSPEEMWDMFSYMPEALENTVKIADECNFKYKFHESKLPKFPLPEGKD 295

Query: 303 IQKEEENE------------LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
              E   E             ++     L+       +     AQ++  RL++EL VI +
Sbjct: 296 DPYEYLKETCYTGLIDRYDVFKDLREKELDYDEVNKIVENSSEAQEFVDRLEYELGVIKQ 355

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M +  YFLIV DFI+++  N IP GPGRGS AGS+ AY L IT IDP+++SL+FERFLNP
Sbjct: 356 MGYIDYFLIVWDFIKFSYDNGIPTGPGRGSAAGSIVAYTLGITKIDPIKYSLIFERFLNP 415

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
           +R+SMPD D DFC +RR EVI YV  KYG + V+QIITFG++ A+  +RDVGRA+   YS
Sbjct: 416 ERVSMPDVDSDFCYERRQEVIDYVVRKYGKDCVSQIITFGTMAARLCIRDVGRAMNYSYS 475

Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
           +VD++ K+IP      +  +A+  +   + A  +D  V  L+++S  LEGL RH+STHAA
Sbjct: 476 EVDKIAKMIPTMLGITIE-KALDLNPELKIAYDSDERVKNLIDVSMDLEGLPRHSSTHAA 534

Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
           G+VI  +PL + VP+ ++   +  VTQF M  +E+ GL+K DFLGL+TLT++  ++  + 
Sbjct: 535 GVVIASKPLVEYVPLQKN--DESIVTQFGMNTLEELGLLKMDFLGLRTLTVMSDAIKMVK 592

Query: 591 -QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
             RGV +DL  I FDD E Y ++    T G+FQLES GM   ++ ++PD +EDIIA +SL
Sbjct: 593 VNRGVDIDLDKIDFDDKEVYKMIGEGRTAGVFQLESPGMTSFMKELKPDNLEDIIAGISL 652

Query: 650 YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           YRPGP+  I  Y   K   +K+    P ++ +L  T GV++YQ
Sbjct: 653 YRPGPMAEIPRYIECKRNPDKVEYETPELESILNVTYGVMVYQ 695


>gi|312873990|ref|ZP_07734026.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF 2052A-d]
 gi|311090539|gb|EFQ48947.1| DNA polymerase III, alpha subunit [Lactobacillus iners LEAF 2052A-d]
          Length = 1040

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 318/1024 (31%), Positives = 508/1024 (49%), Gaps = 38/1024 (3%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6    LQNISSFTLLKSPISVEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
            QL I+          G         ++++     GYQ ++ L S + L  + GK+ + + 
Sbjct: 66   QLRIN----------GLINENQNFDLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
            L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116  LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLVKILPQSSNLYLGVFADK 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                Y  S V  L+    L LVA  +  ++   D    +VL ++  +  +       +  
Sbjct: 175  SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLKSIDDNQSIRDGYELTLKH 233

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                  +++     S     +   +   ++      V        + K            
Sbjct: 234  VGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFDTSYEF 293

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L + A+ GL+ +  +  I        Y  RL +EL +I  M F+ YFLIV D I +    
Sbjct: 294  LHHLAMTGLQAKFNKHDI-----PAKYLNRLKYELKIIDEMGFNDYFLIVWDVINYCHSI 348

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   +RR+EV
Sbjct: 349  GILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPDNRRNEV 408

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + Y+ +KYG + VAQI++F +  AK  L DVG A       +D   K IP   +      
Sbjct: 409  VLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITIDSWLKAIPKSKSKITLSD 468

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A      F     A  S     E+++K+EGL RH S HAAG+VI D  +++ V +     
Sbjct: 469  AYKLSKDFWMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVGLQNGSL 528

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
              +PVTQ   K++E  GL+K DFLGL  LT+L  +L+ +   G+K+D+  IP DD  T  
Sbjct: 529  -GIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLDDPATIK 587

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  RKN +EK
Sbjct: 588  LFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRRKNKEEK 647

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   EM K   
Sbjct: 648  VVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSMEMKKIGV 707

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++ A + G S   A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP +F  A
Sbjct: 708  DFVNRAVQQGHSAAAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYPKQFYVA 767

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTT 849
             +   + + +K+ K+  D +  NI+I  P +N    +F + D   I   L +I G+    
Sbjct: 768  LLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSIIGLRMDF 827

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               IM     +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL S +++ 
Sbjct: 828  VEQIMNL--QRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLASYEDLL 885

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               +      +  +  +F   +    D        + +++ + E E  VLGF     P+ 
Sbjct: 886  ICIK-----MSGGNNVLFQALEPKELD------IKMPSNAQKEEWETSVLGFSPQIDPIL 934

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K G K + +      G ++     ++  +   T+   ++ +  F++  +  + 
Sbjct: 935  AAQIYAKKYGFKPFSDFTFYDEGVSV---GKMMDIKVITTKNNKKMAFAKFNDLHETVDF 991

Query: 1030 NFFP 1033
              FP
Sbjct: 992  VIFP 995


>gi|227541821|ref|ZP_03971870.1| error-prone DNA polymerase [Corynebacterium glucuronolyticum ATCC
            51866]
 gi|227182264|gb|EEI63236.1| error-prone DNA polymerase [Corynebacterium glucuronolyticum ATCC
            51866]
          Length = 1045

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 269/1041 (25%), Positives = 446/1041 (42%), Gaps = 110/1041 (10%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              + +F  L   SSYS L GA     ++++        +A+TD +  + A+ F++ A   
Sbjct: 45   PAATAFAELHCTSSYSFLGGASDPEELVERAVQLGLTGLALTDRDGFYGAVAFAEAARDT 104

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G++ + G +L ++                    + +L    EGY  L  L++  ++    
Sbjct: 105  GLETVFGAELSLEPDRA----------------LTVLAIGYEGYVTLSHLITDAHMASGE 148

Query: 126  KQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
            K       L  +      GL +L       +D A+           L      FG   + 
Sbjct: 149  KDVLYYPPLETIA--AAGGLHVL-------VDHAWLP--------ELDRIVDCFGAQNVS 191

Query: 184  VNLQ-RHRGYDRYRESQVV----QLAYTH-ELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            +  Q R    D  + + +     +L+      P  AT ++       + A          
Sbjct: 192  LEYQVRGLPEDADQFADLDRADPRLSRILSGAPRAATIDA------GHLAAAKAALARRE 245

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            ++   +         +L+    ++         ++ TV +A RC+F   + +P LP +  
Sbjct: 246  SLSQAEPHLHPLGAMWLRGADRLLRAAPGRERLVKETVRVAHRCAFAFDLVSPNLPLWDV 305

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E       E + LR       +    +         +  R++++ EL VI  + F GYF
Sbjct: 306  PEPYG---NEMDYLRGIV---DKRTPVRYHSRPESIKKKAREQIERELAVIEELDFPGYF 359

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV D + +    NI    GRGS A S   +AL IT ++P+   LLFERFL+PDR   PD
Sbjct: 360  LIVNDIVDFCHHENIY-CQGRGSAANSAVCFALGITAVEPIHAKLLFERFLSPDRDGPPD 418

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+D    RR+EVI+YV  KYG +  AQ+    + + K A+RD GRAL  P   +D   +
Sbjct: 419  IDLDIEAGRREEVIQYVYQKYGRDNAAQVANVITYRTKGAVRDAGRALGYPQGTIDAWSR 478

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
             +              +                ++ ++ + +G  RH   H+ G+VI DR
Sbjct: 479  GV-------------EEPPE------------PVVALASQFKGQPRHLGIHSGGMVICDR 513

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKV 596
            P++ +VP       +  V Q++       GL+KFD LGL  L  L   +D +   RG  V
Sbjct: 514  PIADVVPTEWARMENRSVIQWDKDAAAYGGLVKFDLLGLGMLGALHHMVDQVKTHRGTDV 573

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             L  IP DD   Y +L    T+G+FQ+ES      L  ++P    DI+  V+L RPGPI 
Sbjct: 574  HLWEIPLDDPHIYEMLQRADTVGVFQVESRAQMSTLPRLKPRRFFDIVVEVALVRPGPIQ 633

Query: 657  --NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
              ++  Y  R+NG+E +   HP ++  L +T GV ++QEQ+MQ+A+  +G++ +EAD LR
Sbjct: 634  GGSVHPYIRRRNGQEPVTYDHPCLENALGKTLGVPLFQEQLMQMAKDAAGFTGAEADELR 693

Query: 715  RAM-GKKIKEEMDKQKERFISG-ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RAM  K+  E M K KERF  G A+ +GI+  +A  ++  +  FA YGF +SH+ ++A +
Sbjct: 694  RAMGSKRSPERMAKLKERFFDGLAATHGITGDVAQKLWMKMVAFAAYGFPESHSQSFAGL 753

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y +AW K +YP EF    +  +       +    DAR+  I I+P  V     +    D
Sbjct: 754  VYFSAWFKYYYPAEFTVGLLRAQPMGFYSPQSLIADARRHGITILPIDVQVSGEEADTAD 813

Query: 833  N--RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                I   L  + G+G+  A+ +      +PF S+ D   R D   L    +E+L  AGA
Sbjct: 814  GGRAIRLGLNLVSGLGSAAAKRV---EKSQPFTSISDLSRRAD---LTVSQVEALARAGA 867

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            LD FG  R Q L         A      +      + A         ++       ++  
Sbjct: 868  LDSFGVDRRQALWQ-------AGVAATEKPGMLPGLSA---------VSAPALPGMSAFE 911

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                +    G   +  P+   +  L   GI    + ++    + + +A +V  +Q+  T 
Sbjct: 912  LMVADVASTGVTPTAQPVAYVREALAARGIVPASQLLSLPDASRVTVAGIVTHRQRPVTA 971

Query: 1011 KGSRIGWVTFSEPAKEYEANF 1031
             G  + ++   + +       
Sbjct: 972  GG--VTFLGVEDESGLMNVVI 990


>gi|294628568|ref|ZP_06707128.1| error-prone DNA polymerase [Streptomyces sp. e14]
 gi|292831901|gb|EFF90250.1| error-prone DNA polymerase [Streptomyces sp. e14]
          Length = 1097

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 269/1100 (24%), Positives = 449/1100 (40%), Gaps = 102/1100 (9%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            + P F HL   S +SL  GA     + ++ A     A+A+TD + L   + F++    AG
Sbjct: 5    RVPGFSHLHTVSGFSLRYGASHPERLAERAAERGMDALALTDRDTLAGTVRFAKACATAG 64

Query: 67   IQPIIGCQLDID------------------------------------MQDNLKMTNQGK 90
            ++P+ G  L +                                      +        G 
Sbjct: 65   VRPLFGVDLAVAEPRPAPPAGRAAVRPDGSVARRTAPAWPAGGDGAVRPERRRTPVRGGA 124

Query: 91   TPFPTVPSIVLLVST-AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG 149
                + P +  L    A G+  L  LV+  +       +  +          +GL +L G
Sbjct: 125  FVDESAPRVTFLARDGARGWADLCRLVTAAH--AAPADTPLLAWPD---NHADGLTVLLG 179

Query: 150  GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR----GYDRYRES-QVVQLA 204
                 + RA        A + L+ +++++GD L +    H     G    R + + V  A
Sbjct: 180  -PDSDVGRALAAGRPDRAARLLVPWREVYGDALRLEAVWHGRTGTGPGSLRLAARTVGFA 238

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
                +  V +N   +         DVL A      +                 + + +  
Sbjct: 239  AEQRVRPVLSNAVRYADPGQGPVADVLDAARRLVPIEAAGELDSGEAWLKDPGAMLHAAR 298

Query: 265  SDLPEALENTVEIARRC-SFILQVHAPILPRFIEKECDDIQKEEENEL----RNKAVAGL 319
            +D                       A  L    +          E  L    R  A   L
Sbjct: 299  ADRRGRRLPPRHPPTGLLEQTRATAAECLVDPEDDLGMGAVHFPEPHLVGAGRRTAQRTL 358

Query: 320  EVRLAQGAIAKGY-HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
              R A G + +GY   + Y +R+  EL+VIA   F+ YFL VA  +   ++  I V   R
Sbjct: 359  ASRAAAGMVLRGYAGRRAYWERMHEELDVIAYHGFASYFLTVAQVVDDVREMGIRVA-AR 417

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GSGAGS+  + L I   DP+   LL ERFL+  R  +PD DID    RR EV R +  ++
Sbjct: 418  GSGAGSLVNHLLGIAHADPVEHGLLMERFLSKRRFVLPDIDIDVESARRLEVYRRIIGRF 477

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G ERVA +    + + + A+RDVG AL M  +++DR+ K  P+  A      A+ +    
Sbjct: 478  GAERVATVAMPETYRVRHAVRDVGAALSMDPAEIDRVAKSFPHIRARDA-RAALEELPEL 536

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
            +          RL E+ + L+ L R  + H  G+++ D  L    P+       LP++QF
Sbjct: 537  KALAGEKERYGRLWELVEALDALPRGIAMHPCGVLLSDASLLARTPVVPTSGEGLPMSQF 596

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGT 617
            + + +E  GL+K D LG++  + +  ++  + +  G ++DL  +P  D  TY L+ +  T
Sbjct: 597  DKEDVEDLGLLKLDVLGVRMQSAMAHAVAEVERATGERIDLDSVPPGDPATYRLIRSAET 656

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIH 675
            LG FQ+ES G R  +  +QPD   D++  +SL+RPGP+   +   +   ++G+  +   H
Sbjct: 657  LGCFQIESPGQRDLVGRLQPDTFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRYPH 716

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            P +   L+ET GV+++ EQ++ I  L++G    EAD +RR +     E   + K  F   
Sbjct: 717  PDLREPLEETYGVVVFHEQIIHIVHLMTGCGRDEADRVRRGLSD--PESQGRIKVWFAQR 774

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A++ G         +E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +
Sbjct: 775  AAERGYGAETIQRTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHD 834

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------------------------ 831
                 K +    DAR+  + I+P  VN   V  ++                         
Sbjct: 835  PGMYPK-RLLLADARRRGVPILPLDVNRSGVAHRIELVSEKGESEGGRAPKRAEGSAATA 893

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               +  +L+ + G+    A  I    A +P+ SL DF  R      +R +   L   GAL
Sbjct: 894  RWGLRLALSDVHGISEAEAARIA---AGRPYASLLDFWERARP---SRPIAGRLAQVGAL 947

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D FG +R  L   L  + + A+            +   +K   +           + + R
Sbjct: 948  DAFGANRRDLQLHLTELHRGARGA----GGGQLPLAGGKKTAAAG------LPDLSDAER 997

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               E  VL    S + +D ++  L ++G+       A   G  + +A    + Q    R 
Sbjct: 998  LSAELGVLSMDASRNLMDDHRAFLDELGVVSARRLRAARHGETVLVAGAKAATQTPPIRS 1057

Query: 1012 GSRIGWVTFSEPAKEYEANF 1031
            G R+ + T  +     +  F
Sbjct: 1058 GKRVIFSTLDDGTGLVDRVF 1077


>gi|291450565|ref|ZP_06589955.1| DNA polymerase III [Streptomyces albus J1074]
 gi|291353514|gb|EFE80416.1| DNA polymerase III [Streptomyces albus J1074]
          Length = 1489

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 265/1020 (25%), Positives = 448/1020 (43%), Gaps = 53/1020 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL   S YSL  GA     + ++ A     A+A+TD + L  A+ F++ A  AG++P+
Sbjct: 3    FTHLHTVSGYSLRYGASHPGLLAERAAERGMDAVALTDRDTLAGAVRFAKAAATAGVRPL 62

Query: 71   IGCQLDIDMQDNLK---MTNQGKTPFPTVPSIVLLVST-AEGYQRLIELVSRMYLLDQGK 126
             G +L +  +   +       G     +   +  L    A G+  L  LV+  +    G 
Sbjct: 63   FGVELAVGERPRPQGRVPVRGGAFIDESAARVTYLARDGATGWATLCRLVTAAH--AAGT 120

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +     +E   EG+ +L G  +  + RA        A + L  +++++GD L +  
Sbjct: 121  DQPLLPW---RENHGEGVTVLLG-PASDVGRALAAGRPDRAARLLAPWREVYGDALRLEA 176

Query: 187  QRHR----GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
              H     G    R  ++ V  A    +P V TN   +       A DVL A      V 
Sbjct: 177  VHHGLSGTGPGSLRLAARTVGFAADQGVPAVLTNAVRYADPGSGPAADVLDAARRLVPV- 235

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR-CSFILQVHAPILPRFIEKEC 300
               R   + + +LK+ + M      + EA     E A R  +   +     L    +   
Sbjct: 236  DPRRGLDSGERWLKDAAAMARTAERIAEAAGLGPEGAARLLAETRRTADACLVDPEDDLG 295

Query: 301  DDIQKEEENEL----RNKAVAGLEVRLAQGAIAKGYHAQ-DYRQRLDFELNVIARMKFSG 355
                +  E  L    R  A   L  R A G +  G+  +  Y  RL  EL++I    F+ 
Sbjct: 296  IGAVRFPEAALVGAGRRTAQRVLASRAAAGMVRLGHDRKAAYWDRLHHELDIIGHHGFAT 355

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL VA  +   +   + V   RGSGAGS+  + L I   DP+   LL ERFL+  R  +
Sbjct: 356  YFLTVAQVVDDVRDLGVRVA-ARGSGAGSLVNHLLGIAHADPVEHGLLMERFLSKRRAVL 414

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD DID    RR EV R +  ++G ERVA +    + + + A+RDVG AL M  + +DR+
Sbjct: 415  PDIDIDVESARRLEVYRAILGRFGAERVATVAMPETYRVRHAVRDVGAALSMDPADIDRI 474

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             K  P+  A        A+    ++        DRL ++ ++L+ L R  + H  G+++ 
Sbjct: 475  AKAFPHIRARDARAAL-AELPELKQINEEFGGRDRLWQLVEELDALPRGVAMHPCGVLLS 533

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            D  L+   P+       LP++QF+ + +E  GL+K D LG++  + +  +   + +   +
Sbjct: 534  DASLTARTPVVPTSGEQLPMSQFDKEDVEDLGLLKLDVLGVRMQSAMAHATAEVERATGE 593

Query: 596  V----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                   +     D  TY L+ +  TLG FQ+ES G R  +  +QPD   D++  +SL+R
Sbjct: 594  PLDLDRQADPALADPATYALVRSAETLGCFQIESPGQRDLVGRLQPDSFHDLVVDISLFR 653

Query: 652  PGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+   +   +   ++G+  +   HP ++  L++T GV+++ EQ+++I  +L+G     
Sbjct: 654  PGPVAADMVRPFIEARHGRAPVRYPHPDLEDALRDTYGVVVFHEQIIEIVSVLTGCGRDR 713

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD +RRA+     +   + +  F   A+  G +  +    +E++  F  YGF K+HA A+
Sbjct: 714  ADQVRRALSD--PDAQGRLRVWFAQHAAARGYTAEVIARTWEIVEAFGSYGFCKAHAVAF 771

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            AV +YQ+AW+K H+P  F A  +T +     K +    DAR+  + ++P  VN      +
Sbjct: 772  AVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARRRGVPVLPLDVNRSGTTHR 830

Query: 830  VG----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            +              +  +L+ + G+    A  I E     P+ SL DF  R       R
Sbjct: 831  IELVSGDGERPGRWGVRLALSDVHGISEAEAARIEE---HAPYTSLLDFWQRARP---GR 884

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
             V E L   GALD FG +R  LL  L  + +               +   +    + ++ 
Sbjct: 885  PVAERLAQVGALDAFGANRRDLLLHLTELHRGRPRG----AAAQPTLLGADSAPGARRVP 940

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
                   + + R   E  VLG   S + +D ++  L ++ +           G+ + +A 
Sbjct: 941  SAGLPDLDETERLSAELGVLGMDASRNLMDDHRDFLEELRVTSARSLRGASHGSTVLVAG 1000


>gi|239978670|ref|ZP_04701194.1| DNA polymerase III alpha subunit [Streptomyces albus J1074]
          Length = 1499

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 265/1020 (25%), Positives = 448/1020 (43%), Gaps = 53/1020 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL   S YSL  GA     + ++ A     A+A+TD + L  A+ F++ A  AG++P+
Sbjct: 13   FTHLHTVSGYSLRYGASHPGLLAERAAERGMDAVALTDRDTLAGAVRFAKAAATAGVRPL 72

Query: 71   IGCQLDIDMQDNLK---MTNQGKTPFPTVPSIVLLVST-AEGYQRLIELVSRMYLLDQGK 126
             G +L +  +   +       G     +   +  L    A G+  L  LV+  +    G 
Sbjct: 73   FGVELAVGERPRPQGRVPVRGGAFIDESAARVTYLARDGATGWATLCRLVTAAH--AAGT 130

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
                +     +E   EG+ +L G  +  + RA        A + L  +++++GD L +  
Sbjct: 131  DQPLLPW---RENHGEGVTVLLG-PASDVGRALAAGRPDRAARLLAPWREVYGDALRLEA 186

Query: 187  QRHR----GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
              H     G    R  ++ V  A    +P V TN   +       A DVL A      V 
Sbjct: 187  VHHGLSGTGPGSLRLAARTVGFAADQGVPAVLTNAVRYADPGSGPAADVLDAARRLVPV- 245

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR-CSFILQVHAPILPRFIEKEC 300
               R   + + +LK+ + M      + EA     E A R  +   +     L    +   
Sbjct: 246  DPRRGLDSGERWLKDAAAMARTAERIAEAAGLGPEGAARLLAETRRTADACLVDPEDDLG 305

Query: 301  DDIQKEEENEL----RNKAVAGLEVRLAQGAIAKGYHAQ-DYRQRLDFELNVIARMKFSG 355
                +  E  L    R  A   L  R A G +  G+  +  Y  RL  EL++I    F+ 
Sbjct: 306  IGAVRFPEAALVGAGRRTAQRVLASRAAAGMVRLGHDRKAAYWDRLHHELDIIGHHGFAT 365

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL VA  +   +   + V   RGSGAGS+  + L I   DP+   LL ERFL+  R  +
Sbjct: 366  YFLTVAQVVDDVRDLGVRVA-ARGSGAGSLVNHLLGIAHADPVEHGLLMERFLSKRRAVL 424

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD DID    RR EV R +  ++G ERVA +    + + + A+RDVG AL M  + +DR+
Sbjct: 425  PDIDIDVESARRLEVYRAILGRFGAERVATVAMPETYRVRHAVRDVGAALSMDPADIDRI 484

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             K  P+  A        A+    ++        DRL ++ ++L+ L R  + H  G+++ 
Sbjct: 485  AKAFPHIRARDARAAL-AELPELKQINEEFGGRDRLWQLVEELDALPRGVAMHPCGVLLS 543

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            D  L+   P+       LP++QF+ + +E  GL+K D LG++  + +  +   + +   +
Sbjct: 544  DASLTARTPVVPTSGEQLPMSQFDKEDVEDLGLLKLDVLGVRMQSAMAHATAEVERATGE 603

Query: 596  V----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                   +     D  TY L+ +  TLG FQ+ES G R  +  +QPD   D++  +SL+R
Sbjct: 604  PLDLDRQADPALADPATYALVRSAETLGCFQIESPGQRDLVGRLQPDSFHDLVVDISLFR 663

Query: 652  PGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGP+   +   +   ++G+  +   HP ++  L++T GV+++ EQ+++I  +L+G     
Sbjct: 664  PGPVAADMVRPFIEARHGRAPVRYPHPDLEDALRDTYGVVVFHEQIIEIVSVLTGCGRDR 723

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            AD +RRA+     +   + +  F   A+  G +  +    +E++  F  YGF K+HA A+
Sbjct: 724  ADQVRRALSD--PDAQGRLRVWFAQHAAARGYTAEVIARTWEIVEAFGSYGFCKAHAVAF 781

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            AV +YQ+AW+K H+P  F A  +T +     K +    DAR+  + ++P  VN      +
Sbjct: 782  AVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARRRGVPVLPLDVNRSGTTHR 840

Query: 830  VG----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            +              +  +L+ + G+    A  I E     P+ SL DF  R       R
Sbjct: 841  IELVSGDGERPGRWGVRLALSDVHGISEAEAARIEE---HAPYTSLLDFWQRARP---GR 894

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
             V E L   GALD FG +R  LL  L  + +               +   +    + ++ 
Sbjct: 895  PVAERLAQVGALDAFGANRRDLLLHLTELHRGRPRG----AAAQPTLLGADSAPGARRVP 950

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
                   + + R   E  VLG   S + +D ++  L ++ +           G+ + +A 
Sbjct: 951  SAGLPDLDETERLSAELGVLGMDASRNLMDDHRDFLEELRVTSARSLRGASHGSTVLVAG 1010


>gi|300949784|ref|ZP_07163758.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           116-1]
 gi|300450816|gb|EFK14436.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           116-1]
          Length = 788

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 340/791 (42%), Positives = 489/791 (61%), Gaps = 34/791 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFLAASMTLE 795
            EF+A      
Sbjct: 764 AEFMAGGKNPR 774


>gi|332187677|ref|ZP_08389412.1| DNA polymerase III, alpha subunit [Sphingomonas sp. S17]
 gi|332012243|gb|EGI54313.1| DNA polymerase III, alpha subunit [Sphingomonas sp. S17]
          Length = 1097

 Score =  512 bits (1319), Expect = e-142,   Method: Composition-based stats.
 Identities = 253/1060 (23%), Positives = 435/1060 (41%), Gaps = 89/1060 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-------- 62
            F  L   + YS L+GA +   ++ +  A     I I D N +   +   +          
Sbjct: 4    FAELVAATHYSFLDGASAAEAMVTQAIALGLDGIGIADRNTVAGVVRAHRALRELREKFG 63

Query: 63   CAAGI-QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
               G+ + ++G +L                     P IV+      G+ RL  L++R   
Sbjct: 64   KKMGLFELVVGARLVFADG---------------TPDIVVYPVNRAGWGRLTRLLTRGNS 108

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIML-----TGGSSGPIDRAFF--FNSSQVAEKRLLTF 174
              + K    + L  L     E L+++     T     PI  A      +       L   
Sbjct: 109  RAK-KGGCILGLGDLTR-HAEDLLLIVRPESTARPCEPIPDAMLPPKRADPGLAATLDRL 166

Query: 175  KKLFGDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
              +   R+++ +     G DR R +    LA +  +PL+AT ++LF    D    D+L  
Sbjct: 167  VAVAPGRVWLGVTMPREGADRRRLAAQAALAESRGVPLLATTDALFAEPADRPVQDILTC 226

Query: 234  VAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            +     +    R      + +LK  +EM  +F+D P A+  ++ I  R  F L   +   
Sbjct: 227  IREGLTIRSAGRQLAANAERHLKPAAEMARLFADRPGAVAESLAILDRIEFRLNHISYQY 286

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P     E      E ++ L      G   R  +G           R  LD EL +I   +
Sbjct: 287  PDEPVPEGW----EAQDWLEELVRQGAAERFPEGV------PPKLRATLDEELKLIRESE 336

Query: 353  FSGYFLIVADFIQWAKKNNIPV-GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            ++ YFL V D +++A+    P+   GRGS A S   + L +T +DP +  LLF RF++ +
Sbjct: 337  YAHYFLTVHDVVRYARSLEPPILCQGRGSAANSAVCWILGVTSVDPTKHDLLFSRFVSAE 396

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD DIDF  +RR+EVI+Y+  +YG  R A   T    + ++ +R+VGRAL +    
Sbjct: 397  RKEPPDIDIDFEHERREEVIQYIYERYGRHRAAIAATVIHYRPRSTVREVGRALGLSEDI 456

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
              RL   +    +     +   +          +P + RL  +  +L G  RH S H  G
Sbjct: 457  TQRLTSTVWGSFSQRFEEKRFHET----GFSPDNPEIGRLRTLVDRLLGAPRHLSQHVGG 512

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             V+    L + VP++          +++   I++  ++K D L L  LT ++K+ D +A 
Sbjct: 513  FVLTQGRLDETVPIHNGAMEGRTFIEWDKDDIDELRIMKVDILALGMLTCIRKAFDLMAA 572

Query: 592  R--GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                     +L   +D   Y +L    ++G+FQ+ES      L  ++P    D++  V++
Sbjct: 573  NGLPRPKLDTLAQDEDKCVYEMLQKGDSIGVFQVESRAQINMLPRLKPARFYDLVVQVAI 632

Query: 650  YRPGPIDNIVVYN--NRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIA 699
             RPGPI+  +V+    R+  KEK+    P         +  +LK+T GV ++QEQ M++A
Sbjct: 633  VRPGPIEGDMVHPYLRRRANKEKVEYPSPHPWEGDADELKAILKDTYGVPLFQEQAMKLA 692

Query: 700  QLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
             + + ++  EA+ LRRAM        +   +E+ + G  K G  +  A   F+ +  F  
Sbjct: 693  IVAAKFTPDEANQLRRAMATFRNVGTIQNFREKMVGGMVKRGYEQDFAERCFKQIEGFGS 752

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIM 817
            YGF +SHA ++A + Y +AW+K H P  F  A +  +        +  +DAR+   +++ 
Sbjct: 753  YGFPESHALSFARLVYVSAWLKCHQPAIFTCALLNAQPMGFYAPAQLVRDARENGKVEVR 812

Query: 818  PPSVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            P  VN    D ++         +      + G       HI +     P++++E    R 
Sbjct: 813  PVDVNYSGWDNRLERREDGALALRLGFRQVDGFREEWGTHIAD---HAPYEAIESVAIRA 869

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
               KL RR L+ L  A A    G  R +            QW  +   +    +FA  + 
Sbjct: 870  ---KLPRRALDLLAQADAYRSLGRGRRE-----------GQWEARRMKSAQLPLFAAMQA 915

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                            S +   + R       GHP+   +  L   GI    +      G
Sbjct: 916  PEMAAEPEVDLPPMPLSEQVSADYRATRLSLKGHPMAFLRRELASEGILSAADLHNLADG 975

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               ++A +V+ +Q+    KG+   ++T  +      A  +
Sbjct: 976  RRAKVAGVVLVRQRPG--KGNA-IFITIEDETGIVNALLW 1012


>gi|229824039|ref|ZP_04450108.1| hypothetical protein GCWU000282_01343 [Catonella morbi ATCC 51271]
 gi|229786393|gb|EEP22507.1| hypothetical protein GCWU000282_01343 [Catonella morbi ATCC 51271]
          Length = 1116

 Score =  512 bits (1319), Expect = e-142,   Method: Composition-based stats.
 Identities = 303/1023 (29%), Positives = 506/1023 (49%), Gaps = 43/1023 (4%)

Query: 15   QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             VHS+ SLL   L++ + ++         + + D ++L  AL+F  +  AAG++ +IG  
Sbjct: 4    NVHSANSLLASTLTIPSYVEAAKERGYQILGLADVHSLQGALDFYNRCQAAGLKAMIGAT 63

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            + +           G      V   ++      GY  LI L+     L     S      
Sbjct: 64   IKL----------PGALKQTQVYPFLVYALNQAGYYELIGLI---RRLSHQPLSPGAIWD 110

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYD 193
            +L +     L  ++ G +  +++    +  Q A   L   +++FG   +Y+ +     Y+
Sbjct: 111  YLTQ-SCHNLFYISCGHASEVEQTLIHSGDQEASLVLERLEQVFGPGNVYLGVAAF-PYN 168

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  +   A  +++PLV       L++ D  +  VL A+  +  +  + R      + 
Sbjct: 169  PVEGEALKAFAKAYQVPLVVGQGVSTLNQGDAFSLKVLEAIGANETLDVELRAMQGVHYV 228

Query: 254  LKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
                          L + L N+ ++A R    L  +   LP+F   +           LR
Sbjct: 229  YNWADLEAQYVRLGLADCLTNSRQLADRMQVSLPQNQAFLPKFPTPDHLP----ASQFLR 284

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
            +   + LE                Y+QRLD+EL VI  M FS YFLIV D I + + + I
Sbjct: 285  DLTQSALEDLRPADLA-------VYQQRLDYELEVIDSMGFSDYFLIVWDIIVYCQSHAI 337

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             VGPGRGS AGS+ +Y L IT +DP++++LLFERFLNP+R +MPD D+D   ++R +V+ 
Sbjct: 338  RVGPGRGSAAGSLVSYLLGITRVDPIQYNLLFERFLNPERYNMPDIDMDIPDNKRQQVLH 397

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            YV  +YG E+VAQI T G+  A+AA+RD  R L      +    + IP +    +     
Sbjct: 398  YVVERYGQEQVAQIATLGTFGARAAMRDTLRVLGADSETLRVWARAIPKELDISLPQA-Y 456

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
               +  R+      +  +L +++Q +EGL RH STHAA +VI D+ L Q++P+  +  + 
Sbjct: 457  QKSAALRQLVSQSETNQQLFQVAQTIEGLPRHISTHAAAVVIHDQALDQVIPVV-ERPNQ 515

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
              +TQF M  +EK GL+K DFLGL+ L LL   +  + +     D+  I  +D +T  L 
Sbjct: 516  PLMTQFTMYDVEKVGLLKMDFLGLRNLNLLDTIIKQVQKSQADFDIEAISMEDAQTLALF 575

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
                T G+FQ ES G++Q L  +QP+  EDI+A+ +L+RPGP+  I  Y  R++GKE   
Sbjct: 576  RAADTNGVFQFESDGIKQVLRKLQPERFEDIVAVNALFRPGPMKQIDHYVARRHGKESYQ 635

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
            +IHP+++ +L  T G+I+YQEQVMQ+ Q ++G+SL +AD+LRRAMGKK  + M +++E F
Sbjct: 636  AIHPILEEILAPTYGIIVYQEQVMQVCQRMAGFSLGQADLLRRAMGKKQADVMAREREHF 695

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I GA + GI   IA   ++ + +FA YGFN+SHA  Y+ +++Q A++K HYP+ F  A +
Sbjct: 696  IRGAREQGIEPEIASATYDYIYEFASYGFNRSHAVVYSTLAFQLAYLKVHYPLAFYQALL 755

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
             +   N   +  +  +A++    ++  ++N   + F V   ++   L+AI+ +      H
Sbjct: 756  NMGSSNQTTMADYILEAKRHTGPLLGLNLNESQIGFSVSGQQLQVGLSAIRTLRHDFVSH 815

Query: 853  IMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I+E      P+  L  F  R+  K L    LESL+  GA D  G +R  LL++LD + + 
Sbjct: 816  IVEDRQLLGPYTGLLHFMQRLPKKWLKHEWLESLISVGAFDYTGMNRPTLLKNLDKLMQS 875

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
              +     +  + ++F         +  +E     N S + + E  +LGF   GHP+  Y
Sbjct: 876  VTF-----SGGNLSLFPEL------EPRIEWVEDWNPSQKRDKEVEILGFSLEGHPVATY 924

Query: 972  KPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            +   +    +    + +A      ++   +V   +   T+K   + ++   +        
Sbjct: 925  QAFAKSHPNLLSVRDILAAQPNLKVQTLVLVKGIRVINTKKQELMAFLELEDEVASISGV 984

Query: 1031 FFP 1033
             FP
Sbjct: 985  VFP 987


>gi|116695007|ref|YP_840583.1| error-prone DNA polymerase [Ralstonia eutropha H16]
 gi|113529506|emb|CAJ95853.1| DNA polymerase III alpha subunit [Ralstonia eutropha H16]
          Length = 1136

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 257/1103 (23%), Positives = 449/1103 (40%), Gaps = 116/1103 (10%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ-------- 60
            P +V L   S+++ L GA     ++++        +A+TD  ++                
Sbjct: 18   PDYVELHCISNFTFLTGASHPGELIERAFGLGYSGLALTDECSVAGTARAHDAIETLRKR 77

Query: 61   --------KAC-AAGIQ-PII--------GCQ---------------------LDIDMQD 81
                     A    G+  P++        G                         + +  
Sbjct: 78   LHDAVARSAARGEEGVDEPLLDHDEEPDAGADDPHAHASRHQRLQALARAADAFSLLIGS 137

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
               +T    +  P +  +VL+    EG+  L EL++      Q K S R+    L     
Sbjct: 138  RFSLTPADGSARPPL-RLVLIAQHREGFGNLSELITLGRRRAQ-KGSYRLHPEDLAAPAA 195

Query: 142  E--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHRGYDRYRES 198
            +   L  + G  +  +         ++  ++    + +FG+R ++ L Q     D    +
Sbjct: 196  DEAHLRGVPGCVALLLPDYCA--DPELLREQAEWCRAVFGERAWIALEQLQGHADALHRA 253

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++  ++    +PL A               DVL A+     ++ +    + P+     R 
Sbjct: 254  RLEAVSAQTGVPLAAAGAVTMHVRSRKPLSDVLAAIRLGQPLA-ECGMALAPNAEQHLRM 312

Query: 259  EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
              V       EAL  T++IA  C F L +     P  +    +       + LR +   G
Sbjct: 313  RQVLSRLYPREALAQTLKIAESCDFSLGMLRYEYPEELVPAGE----TPISYLRKEVTRG 368

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
               R   G         ++ ++L+ EL +I    +  +FL V D +++A+   I    GR
Sbjct: 369  KRERFPNGLK------PEWEKQLEEELQLIEEKHYEPFFLTVHDIVRFARGEGIL-CQGR 421

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GS A S+  + L +T++ P + +LLF RFL+ +R   PD D+DF   RR+EVI+Y+  KY
Sbjct: 422  GSAANSLVCFCLYVTEVSPEQANLLFGRFLSRERDEPPDIDVDFEHQRREEVIQYIYRKY 481

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G  R A   +  + ++++ALRDVGRAL +  S V+++ K           ++ IA     
Sbjct: 482  GRHRAALAASLITYRSRSALRDVGRALGIDASVVEQVVKGQAWWDGGRGFVEKIARY--- 538

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
                   P+V +   ++ +L G  RH S H  G VI    LS+LVP+     +D  V Q+
Sbjct: 539  -GLDPESPAVQQWASLTAQLRGFPRHLSQHVGGFVIAQHKLSRLVPIENAAMADRSVIQW 597

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----KVDLSLIPFDDHETYHLLT 613
            +   +E  GL+K D L L  L+ ++++L+ +             +  IP +D +TY+++ 
Sbjct: 598  DKDDLESLGLLKVDVLALGMLSAIRRALEMIPNPDPARAALPTRMEDIPKEDPDTYNMIC 657

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK----- 668
               T+G+FQ+ES   +  L  +QP    D++  V++ RPGPI   +V+   K  +     
Sbjct: 658  KAETIGVFQIESRAQQSMLPRLQPRQYYDLVVEVAIVRPGPIQGGMVHPYLKRREAFRRT 717

Query: 669  -EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             +     +P+I+ +L  T GV I+QEQVMQ+A   +G+S  +AD LRR+M    +    +
Sbjct: 718  GKPPTYFNPVIEKVLGRTLGVPIFQEQVMQLAIDAAGFSPGQADQLRRSMAAWRRRGDLR 777

Query: 728  QKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            Q +  +  A   NG  ++ A+ I + +  F +YGF +SHAA++A + Y +AW+K H+P  
Sbjct: 778  QHQDALVRALTGNGYPESFALAICKQIEGFGEYGFPESHAASFAKLVYISAWLKCHHPAA 837

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-------------- 832
            FL A +  +        +  QDA +  +Q++P  V     D  +                
Sbjct: 838  FLCALLNSQPMGFYSPSQLVQDASRNGVQVLPVDVTISRWDSTLEPVEADVADAQARTRP 897

Query: 833  --NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               R+   L  +KG+    A  I  A A +PFDS+ED   R     L+R  +        
Sbjct: 898  QHPRVRLGLGRVKGMREAAALRIEAARAQRPFDSVEDLALRAS---LDRHDI-------- 946

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +      + +  Q   Q         H ++                        
Sbjct: 947  -DVLAAADALAPLAGNRRQARWQARAAAAHAAHRDLL----YEAPPAEAALALPEPRLGE 1001

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                +   LG     HPL + +  L  M      +      G  +R   +V  +Q+  T 
Sbjct: 1002 DVTADYASLGLSLKSHPLALLRRKLTAMRFATASQLARCANGRRVRACGIVTVRQRPSTA 1061

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
             G+   + T  +         +P
Sbjct: 1062 SGT--IFATIEDETGSVNLILWP 1082


>gi|324008246|gb|EGB77465.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           57-2]
          Length = 773

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 344/789 (43%), Positives = 492/789 (62%), Gaps = 34/789 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGTAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFLAASMT 793
            EF+AA MT
Sbjct: 764 AEFMAAGMT 772


>gi|315285249|gb|EFU44694.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           110-3]
          Length = 772

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 341/789 (43%), Positives = 490/789 (62%), Gaps = 34/789 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGTAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKKGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFLAASMT 793
            EF+AA   
Sbjct: 764 AEFMAAGKN 772


>gi|300956067|ref|ZP_07168392.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           175-1]
 gi|300317097|gb|EFJ66881.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           175-1]
          Length = 773

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 340/790 (43%), Positives = 490/790 (62%), Gaps = 34/790 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKKGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFLAASMTL 794
            EF+AA    
Sbjct: 764 AEFMAAGKNP 773


>gi|315300688|gb|EFU59915.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           16-3]
          Length = 770

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 340/784 (43%), Positives = 488/784 (62%), Gaps = 34/784 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGTAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFL 788
            EF+
Sbjct: 764 AEFM 767


>gi|114766756|ref|ZP_01445693.1| DNA polymerase III, alpha subunit, putative [Pelagibaca bermudensis
            HTCC2601]
 gi|114541013|gb|EAU44070.1| DNA polymerase III, alpha subunit, putative [Roseovarius sp.
            HTCC2601]
          Length = 1078

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 257/1052 (24%), Positives = 422/1052 (40%), Gaps = 116/1052 (11%)

Query: 33   LDKIAADQQPAIAITDTNNLFSALEFSQKAC-------------------------AAGI 67
            + +       A+AITD N+L   +                                 AG 
Sbjct: 1    MARATELGLSALAITDRNSLAGMVRAWSALKTLRDEAEQALRIRSTERTDPSSRQPEAGT 60

Query: 68   Q------------PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            Q             I GC+L ++ +                   + L +    Y+RL  L
Sbjct: 61   QEIAVRAGQLLPRLITGCRLVLEDEPVEW---------------LALPTDRAAYERLSRL 105

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            ++      + K   ++ L+ L+E G  GLI++          A        A   L   +
Sbjct: 106  LTLGKRRAE-KGRCQLHLADLEEHGR-GLILI----------ALPPKDLGQATAPLRRLQ 153

Query: 176  KLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
            + F   +++    R+ G D+       +LA     P+VA  + L       +  DVL  +
Sbjct: 154  RRFPGHVFLGAPPRYDGSDQAWFDACAKLALRMNTPMVAVGDVLMHRAARRQLADVLTCL 213

Query: 235  AHSTVVS-QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
                 +     R     +  LK  ++M  ++   P AL  T+EIA RC+F L   +    
Sbjct: 214  REGCTIDAIGTRALPNAERRLKPATDMARLYRRHPAALRRTLEIAARCAFDLGELSYEY- 272

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
                 +     +  +  L   A AGLE R  +GA             +  EL V+  + F
Sbjct: 273  ----PDEIADGETPQARLERLAHAGLERRYPEGA------PDKVFDLMAKELRVVEELGF 322

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
            + YFL V D + +A+   I    GRGS A SV  Y L ITD+ P    ++FERF++  R 
Sbjct: 323  AAYFLTVNDIVAFARSRGIL-CQGRGSAANSVLCYLLGITDVSPDLIGMVFERFISRYRG 381

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
              PD D+DF  +RR+EVI+++  KYG  R     T    + +AA+R+VG+ + +      
Sbjct: 382  EPPDIDVDFEHERREEVIQWIYEKYGRHRAGLCATVIHFRTRAAIREVGKVMGLSQDVTA 441

Query: 474  RLCKLIPNDPAHPVSLQAIAD---DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
             L   I            I +   D   R        +  ++       G  RH S H  
Sbjct: 442  ALSGQIWGQSNGGADPGRIRELGLDPGDRRLAQTIGLIGEII-------GFPRHLSQHVG 494

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G +I    L +L P+         V +++   I+  G++K D L L  LT ++K+   L 
Sbjct: 495  GFIITRGRLDELCPIENAAMEGRTVIEWDKDDIDALGILKVDVLSLGMLTCIRKAFALLD 554

Query: 591  QRGV-KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            Q    +  L  +P +D  TY +L     +G+FQ+ES      L  M+P    D++  V++
Sbjct: 555  QHEGLRHTLDTVPQEDEATYRMLQKADAVGVFQVESRAQMNFLPRMKPATFYDLVIEVAI 614

Query: 650  YRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             RPGPI   +   Y  R+ G E+     P +  + ++T GV ++QEQ MQIA + +GYS 
Sbjct: 615  VRPGPIQGGMVQPYIRRRQGLERPEPFGPALSEVTRKTLGVPLFQEQAMQIAVVGAGYSA 674

Query: 708  SEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
             EAD LRR++    +   + + ++RF  G  KNG ++  A   F  +  FADYGF +SHA
Sbjct: 675  EEADRLRRSLASFRRMGTIGEHRDRFTRGMLKNGYTREAAERCFTQIEGFADYGFPESHA 734

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
            AA+A+++Y ++W+K H+P  F  A +  +        +  +D R   I++ P  VN    
Sbjct: 735  AAFAMLTYVSSWLKCHHPAIFGCALLNSQPMGFYAPAQIVRDLRDHGIELRPICVNHSQW 794

Query: 827  DFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
            D  +         +      IKG     A  I+ A  +  +   E    R         V
Sbjct: 795  DNVLERRADGRLALRLGFRQIKGFREEDAGWIVAARGNG-YPDPESLWLRAGLLP---GV 850

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            LE L  A A    G +R   L  +  I+  A             +FA        +    
Sbjct: 851  LERLAEADAFAGMGLTRRDALWQVRAIRSPA----------PLPLFADPLDGEGLREPDV 900

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            +    +       +   +      HP++  +P +    I  + E  AT     + +  +V
Sbjct: 901  ELPPMHLGEEVVEDYVSMRLSLRAHPMEFLRPDIPD--IVPHSELAATPL-RRLSVCGVV 957

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +++Q+  T  G  + +VT  +         +P
Sbjct: 958  ITRQRPGTASG--VIFVTLEDETGVSNVVVWP 987


>gi|227487016|ref|ZP_03917332.1| error-prone DNA polymerase [Corynebacterium glucuronolyticum ATCC
            51867]
 gi|227093090|gb|EEI28402.1| error-prone DNA polymerase [Corynebacterium glucuronolyticum ATCC
            51867]
          Length = 1045

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 268/1041 (25%), Positives = 442/1041 (42%), Gaps = 110/1041 (10%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              + +F  L   SSYS L GA     ++++        +A+TD +  + A+ F++ A   
Sbjct: 45   PAATAFAELHCTSSYSFLGGASDPEELVERAVQLGLTGLALTDRDGFYGAVAFAEAARDT 104

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G++ + G +L ++                    + +L    EGY  L  L++  ++    
Sbjct: 105  GLETVFGAELSLEPDRA----------------LTVLAIGYEGYVTLSHLITDAHMASGE 148

Query: 126  KQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
            K       L  +      GL +L       +D A+           L      FG   + 
Sbjct: 149  KDVLYYPPLETIA--AAGGLHVL-------VDHAWLP--------ELDRIVDCFGAQNVS 191

Query: 184  VNLQRHRGYDRYRESQVVQLAY------THELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            +  Q     +   +   +  A           P  AT +        + A          
Sbjct: 192  LEYQVSGLPEDADQFADLDRADPRLSRILSGAPRAATIDV------GHLAAAKAALARRE 245

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            ++   +         +L+    ++         +E TV +A RC+F   + +P LP +  
Sbjct: 246  SLSQAEPHLHPLGAMWLRGADRLLRAAPGRERLVEETVRVAHRCAFAFDLVSPNLPLWDV 305

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             E       E + LR       +    +         +  R++++ EL VI  + F GYF
Sbjct: 306  PEPYG---NEMDYLRGIV---DKRTPVRYHSRPESIKKKAREQIERELAVIEELDFPGYF 359

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIV D + +  + NI    GRGS A S   +AL IT ++P+   LLFERFL+PDR   PD
Sbjct: 360  LIVNDIVDFCHRENIY-CQGRGSAANSAVCFALGITAVEPIHAKLLFERFLSPDRDGPPD 418

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+D    RR+EVI+YV  KYG +  AQ+    + + K A+RD GRAL  P   +D   +
Sbjct: 419  IDLDIEAGRREEVIQYVYQKYGRDNAAQVANVITYRTKGAVRDAGRALGYPQGTIDAWSR 478

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
             +              +                ++ ++ + +G  RH   H+ G+VI DR
Sbjct: 479  GV-------------EEPPE------------PVVALAAQFKGQPRHLGIHSGGMVICDR 513

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKV 596
            P++ +VP       +  V Q++       GL+KFD LGL  L  L   +D +   RG  V
Sbjct: 514  PIADVVPTEWARMENRSVIQWDKDAAAYGGLVKFDLLGLGMLGALHHMVDQVKTHRGTDV 573

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             L  IP DD   Y +L    T+G+FQ+ES      L  ++P    DI+  V+L RPGPI 
Sbjct: 574  HLWEIPLDDPHIYEMLQRADTVGVFQVESRAQMSTLPRLKPRRFFDIVVEVALVRPGPIQ 633

Query: 657  --NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
              ++  Y  R+NG+E +   HP ++  L +T G+ ++QEQ+MQ+A+  +G++ +EAD LR
Sbjct: 634  GGSVHPYIRRRNGQEPVTYDHPCLENALGKTLGIPLFQEQLMQMAKDAAGFTGAEADELR 693

Query: 715  RAM-GKKIKEEMDKQKERFISG-ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RAM  K+  E M K KERF  G A+ +GI+  +A  ++  +  FA YGF +SH+ ++A +
Sbjct: 694  RAMGSKRSPERMAKLKERFFDGLAATHGITGDVAQKLWMKMVAFAAYGFPESHSQSFAGL 753

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
             Y +AW K +YP EF    +  +       +    DAR+  I I+P  V     +    D
Sbjct: 754  VYFSAWFKYYYPAEFTVGLLRAQPMGFYSPQSLIADARRHGITILPIDVQVSGEEADTAD 813

Query: 833  N--RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                I   L  + G+GT  A+ +      +PF S+ D   R D   L    +E+L  AGA
Sbjct: 814  GGRAIRLGLNLVSGLGTAAAKRV---EKSQPFTSISDLSRRAD---LTVSQVEALARAGA 867

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            LD FG  R Q L         A      +      + A         ++       ++  
Sbjct: 868  LDSFGVDRRQALWQ-------AGVAATEKPGMLPGLSA---------VSAPALPGMSAFE 911

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                +    G   +  P+   +  L   GI    + ++    + + +A +V  +Q+  T 
Sbjct: 912  LMVADVASTGVTPTAQPVAYVREALAARGIVPASQLLSLPDASRVTVAGIVTHRQRPVTA 971

Query: 1011 KGSRIGWVTFSEPAKEYEANF 1031
             G  + ++   + +       
Sbjct: 972  GG--VTFLGVEDESGLMNVVI 990


>gi|301025936|ref|ZP_07189420.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           69-1]
 gi|300395735|gb|EFJ79273.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           69-1]
          Length = 771

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 340/784 (43%), Positives = 488/784 (62%), Gaps = 34/784 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFL 788
            EF+
Sbjct: 764 AEFM 767


>gi|301646507|ref|ZP_07246382.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           146-1]
 gi|301075293|gb|EFK90099.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           146-1]
          Length = 770

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 339/784 (43%), Positives = 488/784 (62%), Gaps = 34/784 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFL 788
            EF+
Sbjct: 764 AEFM 767


>gi|194291640|ref|YP_002007547.1| error-prone DNA polymerase [Cupriavidus taiwanensis LMG 19424]
 gi|193225544|emb|CAQ71490.1| DNA polymerase III, alpha subunit [Cupriavidus taiwanensis LMG 19424]
          Length = 1121

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 257/1120 (22%), Positives = 437/1120 (39%), Gaps = 149/1120 (13%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK------- 61
            P +V L   S+++ L GA     ++++        +A+TD  ++                
Sbjct: 2    PDYVELHCISNFTFLTGASHPGELIERAFGLGYSGLALTDECSVAGTARAHDAIETLRKR 61

Query: 62   ------------------------ACAAG-----------------------IQPIIGCQ 74
                                    A  AG                        + +IG +
Sbjct: 62   LHDAVERSAARGEEGVDEPLLDDEASDAGDDDPHAHASRHQRLQALARAADAFRLLIGSR 121

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
              +   D  +              +VL+    EG+  L EL++      Q K S R+   
Sbjct: 122  FSLTPADGSERAPL---------RLVLIAQHREGFGNLSELITLGRRRAQ-KGSYRLHPE 171

Query: 135  WLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHRG 191
             L E       L  + G  +  +         +    +    + +FG+R ++ L Q    
Sbjct: 172  DLSEPAAGEAHLRGMPGCVALLLPDYCAE--PERLLAQAEWCRAVFGERAWIALEQLQGH 229

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D    +++  ++    +PL A               DVL A+     ++ +    + P+
Sbjct: 230  ADALHRARLEAVSAQTGVPLAAAGAVTMHVRSRKPLSDVLTAIRLGQPLA-ECGMALAPN 288

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
                 R   V       EAL  T++IA  C F L       P  +    +       + L
Sbjct: 289  AEQHLRMRQVLSRLYPREALAQTLKIAESCDFSLATLRYEYPEELVPPGE----TPISYL 344

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +   G   R   G   +          L  EL +I    +  +FL V D +++A+   
Sbjct: 345  RKEVERGKRERFPNGLKPEWEEQ------LKEELELIEEKHYEPFFLTVHDIVRFARSRG 398

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I    GRGS A S+  + L +T++ P + +LLF RFL+ +R   PD D+DF   RR+EVI
Sbjct: 399  IL-CQGRGSAANSLVCFCLYVTEVSPEQANLLFGRFLSRERDEPPDIDVDFEHQRREEVI 457

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +Y+ +KYG  R A   +  + ++++ALRDVGRAL +  S V+++ K        P  +  
Sbjct: 458  QYIYDKYGRHRAALAASLITYRSRSALRDVGRALGIDASVVEQVVKGQAWWDGGPGFVDK 517

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
            IA            P+V +   ++ +L G  RH S H  G VI    LS+LVP+     +
Sbjct: 518  IARY----GLDPESPAVQQWASLTAQLRGFPRHLSQHVGGFVIARHKLSRLVPIENAAMA 573

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-------DLSLIPFD 604
            D  V Q++   +E  GL+K D L L  L+ ++++L+ +               +  IP +
Sbjct: 574  DRSVIQWDKDDLESLGLLKVDVLALGMLSAIRRALEMIPNPSRDPARAGLPARMEDIPKE 633

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662
            D  TY ++    T+G+FQ+ES   +  L  +QP    D++  V++ RPGPI   +V+   
Sbjct: 634  DKPTYDMICRADTIGVFQIESRAQQSMLPRLQPREYYDLVVEVAIVRPGPIQGGMVHPYL 693

Query: 663  ----NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
                  +  ++  V  + +I+ +L  T GV I+QEQVMQ+A   +G+S  +AD LRR+M 
Sbjct: 694  KRREAFRRTQKPPVYFNAVIEKVLGRTLGVPIFQEQVMQLAIDAAGFSPGQADQLRRSMA 753

Query: 719  KKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
               +    +Q +  +  A   NG  ++ A+ I + +  F +YGF +SHAA++A + Y ++
Sbjct: 754  AWRRRGDLRQHQDALVRALTGNGYPESFALAICKQIEGFGEYGFPESHAASFAKLVYVSS 813

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----- 832
            W+K H+P  FL A +  +        +  QDAR+ +++++P  V     D  +       
Sbjct: 814  WLKCHHPAAFLCALLNSQPMGFYSPSQLVQDARRHDVEVLPVDVTISRWDSTLEPVAESD 873

Query: 833  -----------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                        R+   L  +KG+    A  I  A A + FDS+ED   R          
Sbjct: 874  AAIIRQERPPHPRVRLGLGRVKGMREAAALRIEAARAQRAFDSVEDLALRA--------- 924

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
                         G  R  +   +         +  NR        A         +  E
Sbjct: 925  -------------GLDRHDI--DVLAAADALAPLAGNRRQARWQARAAAAHAAHRDLLYE 969

Query: 942  KFSVEN--------SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
                E                +   LG     HPL + +  L  M      +      G 
Sbjct: 970  APPAEAALALPAPRLGEDVTADYASLGLSLKSHPLALLRHKLAAMRFATASQLERCANGR 1029

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +R   +V  +Q+  T  G+   + T  +         +P
Sbjct: 1030 RVRACGIVTVRQRPSTASGT--IFATIEDETGSINLILWP 1067


>gi|301028677|ref|ZP_07191898.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           196-1]
 gi|299878309|gb|EFI86520.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           196-1]
          Length = 771

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 338/784 (43%), Positives = 488/784 (62%), Gaps = 34/784 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R        +D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKKGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFL 788
            EF+
Sbjct: 764 AEFM 767


>gi|116687208|ref|YP_840454.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424]
 gi|116652923|gb|ABK13561.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424]
          Length = 961

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 252/979 (25%), Positives = 414/979 (42%), Gaps = 72/979 (7%)

Query: 5   LEKSP----SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           +  SP    ++  L   S++S L GA     ++ +        IA+TD  +L   +    
Sbjct: 30  MATSPFSLPAYAELFCLSNFSFLHGASHAEELVKRANQLGYSGIAVTDECSLAGVVRAHV 89

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            A       +IG    +   D                 ++LL    EGY  L EL++   
Sbjct: 90  AAKDLNFPLVIGSYFKLTQAD-----------SSPALDLILLAQNREGYGNLSELITLAR 138

Query: 121 LLDQGKQSVRICLSWLQE-----IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
           +    K    +    L +        +G+       +  I R  F  + +  + ++    
Sbjct: 139 IRS-PKGGYHLTSQDLLKPETTYAHLKGV---PDCLAILIPR--FPANPEELDAQVEWLI 192

Query: 176 KLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
           + F  R +V L  H R  D   E  V  +A  + +P+VA               D + A+
Sbjct: 193 ETFPGRAWVGLCLHQRAMDNVHEDVVEHVASGNGVPVVAVGQVTMHVRSRKPLQDTMTAI 252

Query: 235 AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                V  +    +TP+     RS M         AL  T+ I  RC F L       P 
Sbjct: 253 RVGKPV-AECGYELTPNAEQHLRSRMRLANLYPESALRETIAILSRCRFSLGELRYEYPD 311

Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            +              LR +   G   R   G         + +++++ EL +I  +K+ 
Sbjct: 312 ELVPPGF----TPTTYLRQETYIGAHRRFKNG------IPHNVQKQIEHELELITELKYE 361

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            YFL V D +++A+   I    GRGS A S   Y L IT++DP R ++LFERF++ +R S
Sbjct: 362 PYFLTVYDIVKFARSEGIL-CQGRGSAANSAVCYCLGITEVDPARGTMLFERFVSRERNS 420

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            PD D+DF   +R+ V++Y+  KYG +R A      + +A+  LR+VG+A+ +    VDR
Sbjct: 421 PPDVDVDFEHQKREIVVQYIYRKYGRDRAAIAAAVSTYRARGVLREVGKAIGVDAQIVDR 480

Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           + K           LQ  ++         +   +     ++ +L G  RH S H+ G VI
Sbjct: 481 VAKTHHWFDGSSDLLQRFSES----GLDPSASIIHTWASLATQLCGFPRHLSQHSGGFVI 536

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRG 593
               LS+LVP+      D  V Q++   +E  GL+K D L L  L++++++LD    QRG
Sbjct: 537 SRGKLSRLVPIENAAMPDRSVIQWDKDDLESLGLLKVDVLALGMLSVIRRALDLVSLQRG 596

Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              ++  IP +D ETY +++   T+G+FQ+ES   +  L  ++P    D++  V++ RPG
Sbjct: 597 EPFEMQDIPPEDPETYDMISKADTVGVFQIESRAQQPMLPRLKPKTFYDLVIEVAIVRPG 656

Query: 654 PID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
           PI    +  Y  R+ G + +      ++  L  T GV I+QEQVMQ+A L +G+S  EAD
Sbjct: 657 PIQGGAVHPYLRRRQGIDPVSYPSKDLETALSRTLGVPIFQEQVMQVAILAAGFSPGEAD 716

Query: 712 VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            LRRAM     K  ++   +R +SG    G  +  A  IF  +  F DYGF +SHAA++A
Sbjct: 717 GLRRAMAAWKRKGGLEPYHDRLVSGMLMRGYDREFAEAIFAQIKGFGDYGFPESHAASFA 776

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
           ++ Y ++W+K H P  FL + +  +        +  QDAR+  + I+P  V     +  +
Sbjct: 777 LLVYVSSWLKCHEPEAFLVSLLNSQPMGFYSPSQLIQDARRHGVTILPADVMVSNWESSL 836

Query: 831 G------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
                     +   L+ ++G+    A  I  A A K F S  D   R    +L+R     
Sbjct: 837 EYREGAQPPAVRLGLSLLRGMRVEAAERIELARAVKAFSSTADLGKRA---QLDRHDFHV 893

Query: 885 LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
           L  A AL      R   L             +       +++ A                
Sbjct: 894 LARADALVSLAGGRRSALW------------QSVVAVPEKDLLASANMDDET----PDLG 937

Query: 945 VENSSVRFENEQRVLGFYF 963
                   +++ + +G   
Sbjct: 938 CATEGDEIQSDYQSMGLTL 956


>gi|302384060|ref|YP_003819883.1| DNA polymerase III subunit alpha [Brevundimonas subvibrioides ATCC
            15264]
 gi|302194688|gb|ADL02260.1| DNA polymerase III, alpha subunit [Brevundimonas subvibrioides ATCC
            15264]
          Length = 1126

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 225/1079 (20%), Positives = 416/1079 (38%), Gaps = 95/1079 (8%)

Query: 5    LEK---SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS-- 59
            + +   S  +  L   S++S L GA     ++          + + D N +   +     
Sbjct: 1    MSRLDLSGGYAELATASNFSFLRGASHPKELVATAILRGHSGLGLADRNTVAGVVRAWSA 60

Query: 60   -QKACAAGIQP--II--GC---QL-DIDMQDNLKMTNQGKTPF---------------PT 95
             +     G+ P  ++  G    ++  ++   N    ++                      
Sbjct: 61   LKALREDGLSPPDVMRDGSGPGEVTYVEDPANDPALSEEVKRRAATFKLATGTRLVFNDG 120

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
             P I+    T  G+ RL  L++        K    I L  L     + L+++        
Sbjct: 121  TPDILAYPETRAGWGRLTRLLTLGNRR-AIKGQCEIGLRDLLATPEDLLLIVMP------ 173

Query: 156  DRAFFFNSSQVAEKRLLTFKKLFGDRLYVN-LQRHRGYDRYRESQVVQLAYTHELPLVAT 214
                           L    +      ++  +    G DR R +++  LA    LPL+A 
Sbjct: 174  -----DRRLDRLASVLDQVAEAAPGSTWLGAVMGRGGDDRRRLARLKTLAEQAGLPLLAV 228

Query: 215  NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALEN 273
            N+ L+   +  +  DV+  +     +    R      + +LK+ +EM  +F D PEA+  
Sbjct: 229  NDVLYHDVDQRDLQDVVTCIREGVTIEAAGRLLNANAERHLKSPAEMARLFRDAPEAVAQ 288

Query: 274  TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
            T     R  F L+      P            E +  L +            G       
Sbjct: 289  TGAFLSRVGFDLEQLRYQYPEEPVPPGW----EPQAWLEDLTWKHANRCYPDGV------ 338

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
                   L  EL  I +  F+ YFL + D ++ A+   I    GRGS A S   Y L IT
Sbjct: 339  PSKVSDLLTKELAFIQKAAFAPYFLTIYDIVRVARDKGIL-CQGRGSAANSAVCYVLGIT 397

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
             ++P+   LLFERFL+ DR   PD D+DF  +RR+E+I+++  ++G  R     T    +
Sbjct: 398  SVNPMESDLLFERFLSEDRNEPPDIDVDFEHERREEIIQHIYERHGRHRAGIAATVIRYR 457

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
             K+A+R+VG+ L +      RL           +S + +            +P + R + 
Sbjct: 458  PKSAIREVGKVLGLTEDVTARLAGSQWGSWGSEMSERHVEQ----AGLDATNPMIARAVA 513

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
            ++ +L    RH S H  G ++    L ++VP+      D    +++   I++  L+K D 
Sbjct: 514  MAMRLLNHPRHLSQHVGGFILTQDRLDEMVPIGNAAMPDRTFIEWDKDDIDELRLMKVDV 573

Query: 574  LGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            L L  LT ++K+ D + +   V  DL+ +P DD   Y +L    ++G+FQ+ES      L
Sbjct: 574  LALGMLTCIRKAFDLMREHSGVDHDLASVPQDDPAVYEMLCQGDSIGVFQVESRAQINML 633

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK---------NGKEKIVSIHPLIDPMLK 683
              ++P  + D++  V++ RPGPI   +V+   +           +         +  +L+
Sbjct: 634  PRLKPRKLYDLVIQVAIVRPGPIQGDMVHPYLRRRSGLEEPDYSQPGPAYPSDELKVVLE 693

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEEMDKQKERFISGASKNGIS 742
            +T GV ++QEQ M++A + + ++  EA+ LR+AMG       +   + R +    + G  
Sbjct: 694  KTLGVPLFQEQAMKVAMVAAEFTDREANGLRKAMGTFRGDGTLHTYEHRMVGRMIERGYD 753

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
               A   F+ +  F  YGF +SHAA++A++ Y ++W+K H+P  F  A +  +       
Sbjct: 754  PAFAQRCFDQIKGFGSYGFPESHAASFALLVYISSWIKRHHPAAFACALLNSQPMGFYAP 813

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----RIYYSLAAIKGVGTTTARHIMEASA 858
             +  +DA++  ++  P  V     +  +        +      I G     A  ++ A  
Sbjct: 814  AQIVRDAQEHGVETRPIDVACSGWNNGLEGPADRLALRLGFRQIDGFREDWATALVAAR- 872

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
            D     LE    R          +  L  A A       R + L +   +          
Sbjct: 873  DPAITDLETLARRAGLPG---AAIRKLADADAFRSMRMDRREALWAARRLPD-------- 921

Query: 919  RTNKHENIFAHEKGTFSDKITL-----EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
              +    +FA  +        L      +            + +        HP+ + +P
Sbjct: 922  --DDALPLFAAAEARERGARELGVEPDAQLPSMRLGEHVAADYQTFRLSLKAHPMAILRP 979

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +     +    E++A   G+ +R+A +V+ +Q+    KG+   +VT  +         +
Sbjct: 980  VFAAERVVTCAETLARRGGSTVRVAGVVLVRQRPG--KGNA-IFVTLEDETGVSNVVLW 1035


>gi|309809270|ref|ZP_07703139.1| DNA polymerase III, alpha subunit [Lactobacillus iners SPIN
            2503V10-D]
 gi|308170383|gb|EFO72407.1| DNA polymerase III, alpha subunit [Lactobacillus iners SPIN
            2503V10-D]
          Length = 1040

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 318/1024 (31%), Positives = 507/1024 (49%), Gaps = 38/1024 (3%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6    LQNISSFTLLKSPISVEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
            QL I+          G         ++++     GYQ ++ L S + L  + GK+ + + 
Sbjct: 66   QLRIN----------GLINENQNFDLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
            L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116  LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLVKILPQSSNLYLGVFADK 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                Y  S V  L+    L LVA  +  ++   D    +VL ++  +  +       +  
Sbjct: 175  SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLKSIDDNQSIRDGYELTLKH 233

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                  +++     S     +   +   ++ S    +        + K            
Sbjct: 234  VGNHYLKTKDKLCESYNSLGILEALRNTKQVSDDSNIEIKFTMPQLPKFIQHKFDTSYEF 293

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L + A+ GL+ +  +  I        Y  RL +EL +I  M F+ YFLIV D I +    
Sbjct: 294  LHHLAMTGLQAKFNKHDI-----PSKYLNRLKYELKIIDEMGFNDYFLIVWDVINYCHSI 348

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   +RR+EV
Sbjct: 349  GILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPDNRRNEV 408

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + Y+ +KYG + VAQI++F +  AK  L DVG A       +D   K IP   +      
Sbjct: 409  VLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITIDSWLKAIPKSKSKITLSD 468

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V +     
Sbjct: 469  AYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVGLQNGSL 528

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
              +PVTQ   K++E  GL+K DFLGL  LT+L  +L+ +   G+K+D+  IP DD  T  
Sbjct: 529  -GIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLDDPATIK 587

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  RKN +E 
Sbjct: 588  LFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRRKNKEEN 647

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   EM K   
Sbjct: 648  VVYPDPVLINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSIEMKKIGV 707

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++ A + G S   A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP +F  A
Sbjct: 708  DFVNRAVQQGHSAAAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYPKQFYVA 767

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTT 849
             +   + + +K+ K+  D +  NI+I  P +N    +F + D   I   L +I G+    
Sbjct: 768  LLNSNIYDKQKVTKYIMDLKLDNIKITLPDINYSKRNFYISDKGEIVTGLNSILGLRMDF 827

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               IM     +P  SL DF  ++D+K L   ++ +L+ +GA D    +R  LL S  ++ 
Sbjct: 828  VEQIMNL--QRPIKSLTDFLWKIDTKYLLPDMIGNLIKSGAFDKLHKNRSALLASYKDLL 885

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
               +      +  +  +F   +    D        + +++ + E E  VLGF     P+ 
Sbjct: 886  VCIK-----MSGGNNVLFQALEPKELD------IKMPSNAQKEEWETSVLGFSPQIDPIL 934

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +   +K G K + +      G ++     ++  +   T+   ++ +  F++  +  + 
Sbjct: 935  AAQIYAKKYGFKPFSDFTFYDEGVSV---GKMMDIKVITTKNNKKMAFAKFNDLNETVDF 991

Query: 1030 NFFP 1033
              FP
Sbjct: 992  VIFP 995


>gi|94499703|ref|ZP_01306240.1| putative DNA polymerase III alpha chain [Oceanobacter sp. RED65]
 gi|94428457|gb|EAT13430.1| putative DNA polymerase III alpha chain [Oceanobacter sp. RED65]
          Length = 1023

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 270/1032 (26%), Positives = 441/1032 (42%), Gaps = 74/1032 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA--GI 67
            S+  L   S++S L+GA     +  +    +  AIAITD  ++   +            I
Sbjct: 2    SYAELFCQSNFSFLQGASHPEELAVQAEFLEYNAIAITDECSVAGVVRAHTAIKEHSLSI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+G    +D                    IVLL    + Y  L  ++S      + K 
Sbjct: 62   KLIVGSYFILDD-----------------FHIVLLCPNRDAYAELCRIISNARRRSE-KG 103

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +    L  I  +  + L   +S   + +   N             K    R ++   
Sbjct: 104  QYHLDRWDLMSI--KHCLCLWLPNSSNNNASEMKNDY-----WAQWLNKYHKGRSWIACM 156

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH    D         L+ T +LP+VA    L  S      H VL A+ H T V      
Sbjct: 157  RHLESNDAEHIQYCNTLSKTSDLPIVACGGVLMHSPNRQSLHHVLTAIRHKTTVEDCQDG 216

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R++           ++     PE ++ ++ IA RC+F L       P  +  +     K 
Sbjct: 217  RLSNTERALRPISKIAKL-YKPEWIQESIRIAERCTFDLSELRYEYPAELVPD----NKS 271

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR+    G ++R  +G         D +Q +D EL +I  +K+  YFL + D + +
Sbjct: 272  AMEHLRDLVKHGSQLRFPEGV------PSDIQQTIDKELTLIEELKYPYYFLTIHDLVMF 325

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+  I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +R
Sbjct: 326  AKRQKILF-QGRGSAANSVVCYCLEITSVDPRQISVLFERFISKERDEPPDIDVDFEHER 384

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG ER A   T  S + K A+RDVG+AL +  SQ+D   K I       
Sbjct: 385  REEVIQYIYGKYGRERTALAATVISYRLKMAIRDVGKALGLHESQLDFFIKNIFRRDRSL 444

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                 I +     E+      +  + E    + G  RH S H  G VI   PL +LVP+ 
Sbjct: 445  NWQSQIMELGLNPESYKGQQFIHLVNE----ILGFPRHLSQHVGGFVISRGPLYELVPVE 500

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF--- 603
                    V Q++   +E  GL+K D L L  LT ++K+   + Q+  +           
Sbjct: 501  NAAMEARTVIQWDKDDLESLGLLKVDVLALGMLTAIRKAFSLIQQQHKQSLSIAHITALG 560

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD + Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI   +V+  
Sbjct: 561  DDPDVYKMIQQADTVGVFQIESRAQMSMLPRLKPACYYDLVIQIAIVRPGPIQGDMVHPF 620

Query: 664  RKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             K    +  I      ++ +L  T GV I+QEQV+++A + +G+S  EAD LRRAM    
Sbjct: 621  LKRRNGEESIDYPSKEVEAVLSRTLGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMASWK 680

Query: 722  KEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            K       +++ I+G  K G     A  ++  +  F +YGF +SH+A++AV++Y +AW+K
Sbjct: 681  KTGKLKPFRDKLINGMQKRGYEAEFAERVYMQICGFGEYGFPESHSASFAVLAYVSAWLK 740

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP+EF AA +           +  QDA++  I I+P  VN    +  + D ++   L 
Sbjct: 741  YYYPLEFYAALLNSLPMGFYSASQLIQDAKRHGIHILPTCVNHSQYEHIIEDRKMRLGLH 800

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             I G+  + A+ I++    K +   ++      S  + R+ LESL  A AL     +R +
Sbjct: 801  MISGLSESAAQEIIKQRPSKGYQHTQELI----SLHMTRKDLESLASANALQAISGNRFE 856

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
                L N +     +++   + H N                  S  +       +    G
Sbjct: 857  TRWQLSNQEYALPLLKEQCNHYHLN------------------SEPSEYENLVEDYAATG 898

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
                 HPL +        GI   ++       + + +A +V +KQ   T  G  + ++T 
Sbjct: 899  LTLGKHPLQLLLESGLLQGITTSDQLKNKAHRSLVTVAGVVTAKQAPGTAAG--VTFMTL 956

Query: 1021 SEPAKEYEANFF 1032
             +         +
Sbjct: 957  EDHLGNMNVIVW 968


>gi|19551870|ref|NP_599872.1| error-prone DNA polymerase [Corynebacterium glutamicum ATCC 13032]
 gi|62389529|ref|YP_224931.1| error-prone DNA polymerase [Corynebacterium glutamicum ATCC 13032]
 gi|71151824|sp|Q6M7C6|DNAE2_CORGL RecName: Full=Error-prone DNA polymerase
 gi|41324863|emb|CAF19345.1| PUTATIVE DNA POLYMERASE III ALPHA CHAIN [Corynebacterium glutamicum
            ATCC 13032]
          Length = 1055

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 267/1041 (25%), Positives = 447/1041 (42%), Gaps = 100/1041 (9%)

Query: 2    TQYL--EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
            +  +  E S  F  L   SSY+ L GA   ++++ +       A+++ D +  + A+ F+
Sbjct: 49   SSAMQGEASVPFAELHATSSYNFLTGASDPSDVVVQAKKLGLVALSVMDRDGFYGAVRFA 108

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            + A  AG+  + G +L +                     + +L    EGY++L  L+S  
Sbjct: 109  EAAAEAGMHTVYGAELSLQEGV-----------------LTVLCKNPEGYKKLSHLISDA 151

Query: 120  YLLDQGKQSVRI-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             +    K  VR   L  + E      ++L G                    ++      F
Sbjct: 152  KMATGEKGEVRYPPLPMVAEHAAGDWVVLAGF---------------QWLDKIDYVIDCF 196

Query: 179  -GDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
              + + +         D  R   + +     +L  + + N    +           A+A 
Sbjct: 197  KPENIVLEFGSTMTPEDADRNEYLRRTQAKFQLRGILSTNPESAARGSVRLAGAKQALAR 256

Query: 237  STVVSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
               ++  +         ++++   ++    D  + +  TVE+A  C+F L + AP LP++
Sbjct: 257  KMPLADAESELHPMGTTWMRSGDTLLKAHPDYADLIATTVELAAECAFTLDLVAPNLPKW 316

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                    +  E + L +           +              ++D+EL VI ++ F G
Sbjct: 317  DTP----GEHTEMSWLAHLV---STRIDTRYVGRSADIKARAATQIDYELGVIEKLGFPG 369

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL+V D +++ + +NI    GRGS A S   + L IT+ +P+   LLFERFL+PDR   
Sbjct: 370  YFLVVNDLVEFCRDSNIL-CQGRGSAANSAVCFVLGITNAEPISAGLLFERFLSPDRDGP 428

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD DID    RR+EVI+YV  KYG +  AQ+    + + K A+RD  RAL  P    D  
Sbjct: 429  PDIDIDIESGRREEVIQYVYEKYGRDNAAQVANVITYRTKGAMRDAARALGYPQGAADAW 488

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             K                               D +LE++ + +G  RH   H+ G+VI 
Sbjct: 489  AKGTS-------------------------EPPDDVLELAAQFKGQPRHLGIHSGGMVIC 523

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGV 594
            DRP++ +VP+      +  V Q++      AGL+KFD LGL  L  +   LD +   RG 
Sbjct: 524  DRPIADVVPVEWARMDNRSVVQWDKDDCATAGLVKFDLLGLGMLEAIHHMLDLVAEHRGK 583

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            K++L  +   + E Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGP
Sbjct: 584  KINLWELDLAEPEVYDMLCKADAVGVFQVESRAQLSTLPRLKPRTFFDLVVEVALIRPGP 643

Query: 655  ID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            I   ++  Y  R+ G+E I   HP+++  L +T G+ ++QEQ+MQ+A   +G+S  EAD 
Sbjct: 644  IQGGSVHPYLRRRAGEEAITYDHPVLEKSLGKTLGIPLFQEQLMQVAVDAAGFSGGEADS 703

Query: 713  LRRAM-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            LRRAM  K+  E M   + RF  G    NGI    A  ++  +  FA YGF +SH+ ++A
Sbjct: 704  LRRAMGSKRSPERMAALRSRFFQGLKDTNGIVGETAEKLWNKIVAFAAYGFPESHSQSFA 763

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             + Y +AW K HYP EF    +  +       +    DAR+  + I+P +VN   V+   
Sbjct: 764  SLVYFSAWFKYHYPAEFCVGLLRAQPMGFYSPQSLISDARRHGVSILPITVNDSGVEADA 823

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             +  I   L  +KG+G   A+ I +   + PFDS+ D   R D   LN   +E+L  AGA
Sbjct: 824  PNGAIRLGLNLVKGLGHDAAQRIED---NAPFDSIPDLSRRAD---LNVAQVEALARAGA 877

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            +DC G  R Q L         A      +      +           I        ++  
Sbjct: 878  VDCLGVGRRQALWQ-------AGVAATEKPGMLPGL---------SVIEAPALPGMSAFE 921

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                     G      P+ + +  + ++GI   +  +    G  +R+A +V  +Q+ +T 
Sbjct: 922  LMATNISATGVTADYQPMALIRERMEELGIVPADRLLEVEDGTRLRIAGIVTHRQRPQTA 981

Query: 1011 KGSRIGWVTFSEPAKEYEANF 1031
             G  + ++   +         
Sbjct: 982  SG--LTFLGMEDETGLMNVMV 1000


>gi|300938591|ref|ZP_07153324.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           21-1]
 gi|300456473|gb|EFK19966.1| putative DNA polymerase III subunit alpha [Escherichia coli MS
           21-1]
          Length = 771

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 339/784 (43%), Positives = 488/784 (62%), Gaps = 34/784 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINRRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYP 763

Query: 785 VEFL 788
            EF+
Sbjct: 764 AEFM 767


>gi|225850456|ref|YP_002730690.1| DNA polymerase III subunit alpha [Persephonella marina EX-H1]
 gi|225645313|gb|ACO03499.1| DNA polymerase III subunit alpha [Persephonella marina EX-H1]
          Length = 1574

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 254/711 (35%), Positives = 388/711 (54%), Gaps = 19/711 (2%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            FVHL +H+ YSLL+GA+ +  +  K       A+ +TD  N+F A++F Q+    GI+P
Sbjct: 4   DFVHLHLHTHYSLLDGAIKIPELAQKAVEYGYKAVGMTDHGNIFGAVQFYQEMKKVGIKP 63

Query: 70  IIGCQLDIDMQDNLKMTNQGKTP-FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           IIG +         K     +         ++L      G++ L++L S  Y  +     
Sbjct: 64  IIGMEAYFTSNRFEKKGKGSEDILSDKNYHLILHAKDKTGFKNLMKLSSLAYT-EGFYYK 122

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            RI    L+    EGLI  T    G I           A ++    K +FGD LY  +Q 
Sbjct: 123 PRIDWELLERYH-EGLICQTACLKGFIPHLLSQGKFDEAYQQAKRLKDIFGDDLYFEIQI 181

Query: 189 HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV---SQKD 244
           +   ++      +++LA    + +VATN+S +L+ ED +AHDV+ A+     V    ++ 
Sbjct: 182 NGLPEQEVANKGIIELARKLGVKIVATNDSHYLNPEDQKAHDVIKALQMKKTVAELKKEG 241

Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA---PILPRFIEKECD 301
           +       +     EM   F    EAL NTVEIA +C+  ++       + P++     D
Sbjct: 242 KVFQVTGLHFTKPEEMYRKFKGYEEALRNTVEIAEKCNVEIETADTRGYLFPKYQIPGLD 301

Query: 302 DIQKEEE--NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               EEE        +  GLE RL++         ++YR+RL +E++VI +M F  YFLI
Sbjct: 302 REATEEEKVEYFEKLSWEGLERRLSEKKDLPKSKIEEYRERLRYEIDVIKQMGFPEYFLI 361

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V DFI +AKKN IPVGP RGS AGS+ AY L ITD+DPL+  L+FERFLNPDR+SMPD D
Sbjct: 362 VQDFINYAKKNGIPVGPARGSAAGSLVAYTLGITDVDPLQHGLIFERFLNPDRISMPDID 421

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           +DFC + R +VI YV+ KYG + VAQIIT+  +++K  +RDV RAL   YS+ DR+ K+I
Sbjct: 422 VDFCMENRGKVIEYVKEKYGEQSVAQIITYNFMKSKMVIRDVARALGFSYSEADRIAKMI 481

Query: 480 PNDPAHPVS---LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
              P    +    + +  +  FR+    D  V  L+++++KLEGL RH   HAAG+VI  
Sbjct: 482 LPGPVQGSTLTIDENLEANPEFRKLYETDEKVRELIDLARKLEGLARHTGIHAAGVVIAP 541

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
            PL + VP+Y D +     TQF+M  +E  GL+K DFLGLKTLT L    + + +R  + 
Sbjct: 542 GPLDEFVPVYVD-KDGTKATQFDMNTLETLGLVKMDFLGLKTLTELNYMKNLIKERHGID 600

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
           ++   +P DD   Y LL +  T G+FQLES GM+  L  ++PD  ++IIA+++L+RPGP+
Sbjct: 601 INFHKLPIDDQNVYRLLQSGKTTGVFQLESKGMQDLLVRLKPDKFDEIIAILALFRPGPL 660

Query: 656 DNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            + +   + +RK+G++ +      +  +L+ET G+ +  + ++ +A     
Sbjct: 661 MSGMVDDFIDRKHGRKPVEYPFEEVKEILEETYGLCLTGDTLITMADGSRK 711



 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 119/351 (33%), Positives = 191/351 (54%), Gaps = 5/351 (1%)

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
                 IYQEQ+M +A +LSG++++EAD LR+A+GKK  + M K K+RFISGA + G  K 
Sbjct: 1101 ISHNCIYQEQIMFMANILSGFTMAEADTLRKAIGKKKADVMAKMKDRFISGAVERGFDKV 1160

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
                +++ + KFA Y FNKSH+ AYA ++Y TA++KT+YP EF A  +++E ++ + +  
Sbjct: 1161 KIEKLWDDIEKFASYSFNKSHSTAYAYLTYWTAYIKTYYPEEFFAVKLSIENNDNKFLNL 1220

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASA-DKPF 862
               D   F I+++PP +N    +F + D  +I + L+ IK VG  +A+ I+E    +  +
Sbjct: 1221 LL-DMEDFGIKLLPPDINRSRSNFSIEDKGKIRFGLSRIKNVGEQSAKLIVEERERNGDY 1279

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
              + D   R+DSK LN+RVLE+L+ AGA D  G  R  +L S+D      Q   + + + 
Sbjct: 1280 KDIFDIAERMDSKALNKRVLEALIKAGAFDFSGVDRGVMLASVDRALSAGQKAREKKASG 1339

Query: 923  HENIFAHEKGTFSDK-ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
              ++F              E     +   +   E+ VLGFY SGHPL+ YK  L+   + 
Sbjct: 1340 QNSLFGLMPQIEDGNGFAYENAEPISEKEKLNFEKEVLGFYISGHPLNAYKKELQGY-VI 1398

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                      G+ +R+A ++   ++KKTR GS +  +T  +     +   F
Sbjct: 1399 KINSLAERKTGDKVRIAGVISDIKKKKTRSGSTMAILTVQDETGILDVRVF 1449


>gi|257081296|ref|ZP_05575657.1| DNA polymerase III alpha subunit [Enterococcus faecalis E1Sol]
 gi|256989326|gb|EEU76628.1| DNA polymerase III alpha subunit [Enterococcus faecalis E1Sol]
          Length = 1066

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 305/989 (30%), Positives = 490/989 (49%), Gaps = 54/989 (5%)

Query: 52   LFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
            +  A+EF +    AGIQPIIG +L+    +                 ++L     +GYQ+
Sbjct: 1    MHGAVEFYEACQEAGIQPIIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQ 49

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
            L++L S     +            L E  +    L  +T  + G + + FF    Q A  
Sbjct: 50   LMQLSSSKMTTEGPFY--------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVH 100

Query: 170  RLLTFKKLF-GDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
                    F    L+V        ++ R   +       +LP VA      L+ E+  A 
Sbjct: 101  AFQQLASYFDPQSLFVE--HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAV 158

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             VL ++  +  ++   +     +     R    ++   L  A    V+   + +   +V 
Sbjct: 159  TVLESIKENNQLNITSQT-PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVD 217

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             P+  + +        +   + LR   +  L  R+           + Y++RL+ EL +I
Sbjct: 218  IPLHQKLLPHFPVPDNQTAGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTII 270

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
              M F  YFLIV D + +   N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFL
Sbjct: 271  HNMGFDDYFLIVWDVMDFCHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFL 330

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
            NP+R +MPD D+D   +RR+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   + 
Sbjct: 331  NPERYTMPDIDLDIPDNRREEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLS 390

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
             S+ +R    +PN     +      +  R +E     P+   L + + +LEGL RH STH
Sbjct: 391  QSEANRWSAAVPNKLKITLEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTH 449

Query: 529  AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            AAG+VI D  L  LVP+     +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  
Sbjct: 450  AAGVVISDENLLNLVPLQPGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTA 508

Query: 589  LAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            + +     + L+ IP DD  T  L     T G+FQ ES+G+R  L  + P  IEDI A+ 
Sbjct: 509  VKRVYNRTIRLNQIPLDDETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVN 568

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
            +LYRPGP+ NI V+  RK G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL
Sbjct: 569  ALYRPGPMQNIDVFIRRKKGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSL 628

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             +AD+LRRA+ KK K+ +D+++  F++GA + G  K  A  +++ + +FA+YGFN+SHA 
Sbjct: 629  GQADILRRAISKKKKDVLDEERNHFVNGALQQGYPKETANQVYDYIERFANYGFNRSHAF 688

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AY+ I +Q A++K HYP  F  A +     N  KIK++  +AR+    I+ PS+N     
Sbjct: 689  AYSFIGFQMAYLKVHYPSAFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYS 748

Query: 828  FKVG-DNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F +    +I +  +++KG+     ++I+ E   + P+ + ++F  R+D K L    +E L
Sbjct: 749  FYLNQQQQILFGFSSLKGIRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPL 808

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
            +  GA D    +R QL   L++  +         +    ++          K   E+ + 
Sbjct: 809  IAIGAFDEIAPNRRQLAVGLESNIQSILL-----SGGSMDLLETL------KPKEEEIAD 857

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                 R E E++ LG Y SGHP + +K   L K            +     +L   V + 
Sbjct: 858  YPLEERLEQEEQYLGVYLSGHPTEEFKKTRLAKQTQL----VHELVENQPTKLLIYVKNI 913

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  +T+KG ++ +V   +         FP
Sbjct: 914  RTIRTKKGEQMAFVDGDDTTGSISLTLFP 942


>gi|218440338|ref|YP_002378667.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 7424]
 gi|218173066|gb|ACK71799.1| DNA polymerase III, alpha subunit [Cyanothece sp. PCC 7424]
          Length = 876

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 307/864 (35%), Positives = 467/864 (54%), Gaps = 48/864 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+      PAIA+TD   ++ A+E  +   +  I+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPALIDRAIELGMPAIALTDHGVMYGAIELIKICRSKNIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ +   D    + + +         V+L    +GY+ L++L +   L    GK  
Sbjct: 62  IIGNEMYVINADLDDRSKKHRK-----YHQVVLAKNNQGYKNLVKLTTISSLHGMHGKGI 116

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L+E   EGLI+ +    G + +         A+K    +K LFGD  Y+ 
Sbjct: 117 FARPCINKELLKEYH-EGLIVTSACLGGEVPQNILAGKLDQAKKVAKWYKDLFGDDYYLE 175

Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR     +V++A   ++ +VATN+S F+S  D EAHD L+ +    +++++ 
Sbjct: 176 IQDHGSPEDRIVNLGIVKIAKDLKIKIVATNDSHFISCYDVEAHDALLCIQTGKLITEEK 235

Query: 245 RPRVTPDHYLKNRSEMVSIFSDL---PEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
           R R +   YLK+  EM  +F D        E           ++Q +  +    I     
Sbjct: 236 RMRYSGTEYLKSADEMRQLFRDHLEDEMIEEAINNTLEVADKVVQDYKILGEPRIPDYPV 295

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                 ++ +  K   GL  RL   ++        Y+QRL++EL +I +M FS YFL+V 
Sbjct: 296 PPGHTADSYVEEKTWEGLLERLKCRSVI--EIPPAYKQRLEYELKMIQQMGFSTYFLVVW 353

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           D+I++A+ + IPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D D
Sbjct: 354 DYIKYARDHEIPVGPGRGSAAGSLVAYALKITNIDPVHHGLLFERFLNPERKSMPDIDTD 413

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC +RRDE+I+YV  KYG   VAQIITF  L +KA L+DV R L +PYS+ D++ KLIP 
Sbjct: 414 FCIERRDEMIKYVTEKYGERNVAQIITFNRLTSKAVLKDVARVLDIPYSESDKMAKLIPV 473

Query: 482 DPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
               P  L+ +      +  F++   +DP V R ++++ ++EG  +    HAAG+VI  +
Sbjct: 474 SRGKPTKLKVMISDETPEPEFKQKYDSDPQVKRWVDMAIRIEGTNKTFGVHAAGVVISSQ 533

Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA------- 590
           PL ++VP+ ++      +TQ+ M+ +E  GL+K DFLGLK LT +QK+ + +        
Sbjct: 534 PLDEIVPLQKN-NDGAVITQYFMEDLESLGLLKMDFLGLKNLTTIQKTAELVKVNKNEII 592

Query: 591 -------------QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
                        +   K +L  +P D  +T+ LL      GIFQLESSGMRQ +  ++P
Sbjct: 593 DVDELPLHERKALEIIAKGELKKLPDDVEKTHKLLERGDLEGIFQLESSGMRQIVRDLKP 652

Query: 638 DCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
             IEDI ++++LYRPGP+D   I  + +RK+GKE I   H L++P+LKET  V++YQEQ+
Sbjct: 653 SGIEDISSILALYRPGPLDAGLIPKFIDRKHGKEPIKYEHQLLEPILKETYAVLVYQEQI 712

Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
           M++AQ L+GYSL EAD+LRRAMGKK   EM K KE FI G++KNG+S+ IA N+F+ + K
Sbjct: 713 MKMAQDLAGYSLGEADLLRRAMGKKKISEMKKHKEIFIDGSTKNGVSQEIAENLFDQMVK 772

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE-----MDNVEKIKKFCQDAR 810
           FA+Y  +                      ++    ++            +   +  Q+  
Sbjct: 773 FAEYCLSYETQIMTVEYGLMPIGKIVEEQIDCTVYTVNKNGFVYTQPIAQWHYRGEQEVF 832

Query: 811 QFNIQIMPPSVNTPCVDFKVGDNR 834
           ++ ++       T    F   D +
Sbjct: 833 EYCLEDGSTIRATKDHKFMTTDGQ 856


>gi|21323403|dbj|BAB98031.1| DNA polymerase III alpha subunit [Corynebacterium glutamicum ATCC
            13032]
          Length = 1004

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 267/1035 (25%), Positives = 445/1035 (42%), Gaps = 98/1035 (9%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            E S  F  L   SSY+ L GA   ++++ +       A+++ D +  + A+ F++ A  A
Sbjct: 4    EASVPFAELHATSSYNFLTGASDPSDVVVQAKKLGLVALSVMDRDGFYGAVRFAEAAAEA 63

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G+  + G +L +                     + +L    EGY++L  L+S   +    
Sbjct: 64   GMHTVYGAELSLQEGV-----------------LTVLCKNPEGYKKLSHLISDAKMATGE 106

Query: 126  KQSVRI-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLY 183
            K  VR   L  + E      ++L G                    ++      F  + + 
Sbjct: 107  KGEVRYPPLPMVAEHAAGDWVVLAGF---------------QWLDKIDYVIDCFKPENIV 151

Query: 184  VNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            +         D  R   + +     +L  + + N    +           A+A    ++ 
Sbjct: 152  LEFGSTMTPEDADRNEYLRRTQAKFQLRGILSTNPESAARGSVRLAGAKQALARKMPLAD 211

Query: 243  KDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             +         ++++   ++    D  + +  TVE+A  C+F L + AP LP++      
Sbjct: 212  AESELHPMGTTWMRSGDTLLKAHPDYADLIATTVELAAECAFTLDLVAPNLPKWDTP--- 268

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              +  E + L +           +              ++D+EL VI ++ F GYFL+V 
Sbjct: 269  -GEHTEMSWLAHLV---STRIDTRYVGRSADIKARAATQIDYELGVIEKLGFPGYFLVVN 324

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D +++ + +NI    GRGS A S   + L IT+ +P+   LLFERFL+PDR   PD DID
Sbjct: 325  DLVEFCRDSNIL-CQGRGSAANSAVCFVLGITNAEPISAGLLFERFLSPDRDGPPDIDID 383

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
                RR+EVI+YV  KYG +  AQ+    + + K A+RD  RAL  P    D   K    
Sbjct: 384  IESGRREEVIQYVYEKYGRDNAAQVANVITYRTKGAMRDAARALGYPQGAADAWAKGTS- 442

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                                       D +LE++ + +G  RH   H+ G+VI DRP++ 
Sbjct: 443  ------------------------EPPDDVLELAAQFKGQPRHLGIHSGGMVICDRPIAD 478

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSL 600
            +VP+      +  V Q++      AGL+KFD LGL  L  +   LD +   RG K++L  
Sbjct: 479  VVPVEWARMDNRSVVQWDKDDCATAGLVKFDLLGLGMLEAIHHMLDLVAEHRGKKINLWE 538

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NI 658
            +   + E Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI   ++
Sbjct: 539  LDLAEPEVYDMLCKADAVGVFQVESRAQLSTLPRLKPRTFFDLVVEVALIRPGPIQGGSV 598

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM- 717
              Y  R+ G+E I   HP+++  L +T G+ ++QEQ+MQ+A   +G+S  EAD LRRAM 
Sbjct: 599  HPYLRRRAGEEAITYDHPVLEKSLGKTLGIPLFQEQLMQVAVDAAGFSGGEADSLRRAMG 658

Query: 718  GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
             K+  E M   + RF  G    NGI    A  ++  +  FA YGF +SH+ ++A + Y +
Sbjct: 659  SKRSPERMAALRSRFFQGLKDTNGIVGETAEKLWNKIVAFAAYGFPESHSQSFASLVYFS 718

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            AW K HYP EF    +  +       +    DAR+  + I+P +VN   V+    +  I 
Sbjct: 719  AWFKYHYPAEFCVGLLRAQPMGFYSPQSLISDARRHGVSILPITVNDSGVEADAPNGAIR 778

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  +KG+G   A+ I +   + PFDS+ D   R D   LN   +E+L  AGA+DC G 
Sbjct: 779  LGLNLVKGLGHDAAQRIED---NAPFDSIPDLSRRAD---LNVAQVEALARAGAVDCLGV 832

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R Q L         A      +      +           I        ++        
Sbjct: 833  GRRQALWQ-------AGVAATEKPGMLPGL---------SVIEAPALPGMSAFELMATNI 876

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
               G      P+ + +  + ++GI   +  +    G  +R+A +V  +Q+ +T  G  + 
Sbjct: 877  SATGVTADYQPMALIRERMEELGIVPADRLLEVEDGTRLRIAGIVTHRQRPQTASG--LT 934

Query: 1017 WVTFSEPAKEYEANF 1031
            ++   +         
Sbjct: 935  FLGMEDETGLMNVMV 949


>gi|307154137|ref|YP_003889521.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 7822]
 gi|306984365|gb|ADN16246.1| DNA polymerase III, alpha subunit [Cyanothece sp. PCC 7822]
          Length = 875

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 302/787 (38%), Positives = 447/787 (56%), Gaps = 43/787 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+      PAIA+TD   ++ A+E  +      I+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPALIDRAIELGMPAIALTDHGVMYGAIELIKICRGKNIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ I   D    T + +         V+L    +GY+ L++L +   L    GK  
Sbjct: 62  IIGNEMYIINADLDDRTKKQRK-----YHQVVLAKNNQGYKNLVKLTTISSLHGMHGKGI 116

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L++   EGLI+ +    G + +A    + + A+K    ++ LFGD  Y+ 
Sbjct: 117 FARPCINKKLLEQYH-EGLIVTSACLGGEVPQAILAGNLEEAKKVAKWYQDLFGDDYYLE 175

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR     +V++A    + +VATN+S F+S  D EAHD L+ +    ++S++ 
Sbjct: 176 IQDHGSKEDRIVNLGIVKIAKELGIKIVATNDSHFISCYDVEAHDALLCIQTGQLISEEK 235

Query: 245 RPRVTPDHYLKNRSEMVSIFSDL---PEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
           R R +   YLK+  EM  +F D        E           ++Q +  +    I     
Sbjct: 236 RMRYSGTEYLKSAEEMRQLFRDHLEDEIIEEAIKNTLEVAEKVVQDYKILGEPRIPDYPV 295

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                 +  +  KA  GL  RL   +I        Y++RL++EL +I +M FS YFL+V 
Sbjct: 296 PAGHTPDTYVEEKAWQGLLERLKCHSIT--ELNPLYKKRLEYELKMIQQMGFSTYFLVVW 353

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           D+I++A+ N IPVGPGRGS AGS+ AY+L IT+IDP+   LLFERFLNP+R SMPD D D
Sbjct: 354 DYIKYARDNGIPVGPGRGSAAGSLVAYSLKITNIDPVHHGLLFERFLNPERKSMPDIDTD 413

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC +RRD++I+YV  KYG   VAQIITF  L +KA L+DV R L +PY++ D++ KLIP 
Sbjct: 414 FCIERRDDMIKYVTKKYGEGNVAQIITFNRLTSKAVLKDVARVLDIPYAESDKMAKLIPV 473

Query: 482 DPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
               P  L+ +      +  F+     DP+V R ++++ ++EG  +    HAAG+VI  +
Sbjct: 474 SRGKPTKLKVMISDETPEPEFKAKYDNDPNVKRWVDMAIRIEGTNKTFGVHAAGVVISSQ 533

Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
           PL ++VP+ ++      +TQ+ M+ +E  GL+K DFLGLK LT LQK+ + + Q   +  
Sbjct: 534 PLDEIVPLQKN-NDGAVITQYYMEDLESLGLLKMDFLGLKNLTTLQKTAELIKQNKQEDI 592

Query: 598 --------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
                                  +P D   T+ LL      GIFQLESSGMRQ +  ++P
Sbjct: 593 DVETLPLDERKALEIIAKGVYKKLPKDIEATHKLLERGDLEGIFQLESSGMRQIVRDLKP 652

Query: 638 DCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
             IEDI ++++LYRPGP+D   I  + +RK+G+  I   HPL++P+LKET  V++YQEQ+
Sbjct: 653 SGIEDISSILALYRPGPLDAGLIPKFIDRKHGRVPIKYDHPLLEPILKETYAVLVYQEQI 712

Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
           M++AQ L+GYSL EAD+LRRAMGKK   EM K KE FI G++KNG+ + IA N+F+ + K
Sbjct: 713 MKMAQDLAGYSLGEADLLRRAMGKKKISEMQKHKEIFIDGSTKNGVPQEIAENLFDQMVK 772

Query: 756 FADYGFN 762
           FA+Y  +
Sbjct: 773 FAEYCLS 779


>gi|326692987|ref|ZP_08229992.1| DNA-directed DNA polymerase III, alpha chain [Leuconostoc argentinum
            KCTC 3773]
          Length = 1117

 Score =  509 bits (1310), Expect = e-141,   Method: Composition-based stats.
 Identities = 311/1034 (30%), Positives = 504/1034 (48%), Gaps = 56/1034 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  LQ+ S+YSLL+   ++  I+         AIA+TD N ++ A+EF + A    ++P+
Sbjct: 2    YAPLQILSAYSLLKNPNTIPQIIATAKVRHYEAIALTDLNVMYGAVEFYRTALENNLKPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L+++          G     T   ++L+  T  GYQ L+ L S         ++  
Sbjct: 62   FGVTLEVN----------GLVNTATTFPMILISETQVGYQNLMWLSSAKMTA----KTPD 107

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE--KRLLTFKKLFGDRLYVNLQR 188
            + L+ L +   EG+ ++  G    + +        VA+  + L T+  +    LY+ +  
Sbjct: 108  LTLAALSD-HLEGINVILPG-DSELSQFIASAYDDVAQYWQTLTTY--IAPTHLYLGINP 163

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY---EAHDVLMAVAHSTVVSQKDR 245
                    ++++ +     +  L+A ++  +L+ +D    +    + A      +    +
Sbjct: 164  QMAP--QIQTRLAEFQAATQAQLIALDDVAYLNTDDAFTTQVLKSIDANVKLEGIKALSQ 221

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVE-IARRCSFILQVHAPILPR-FIEKECDDI 303
               T      N+ +     SDL +A     E +  R    L          F        
Sbjct: 222  QSGTQILQDYNQVKAAYQTSDLLKAAFLANEALVARSQVTLTFSQTAALPAFQLPAGMPD 281

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                   LR  A  GL  RL    + +      Y+  L  EL VI ++ F+ YFLIV D 
Sbjct: 282  AGT---YLRTLAEKGLAARLQGLHVDQS----RYQALLAHELAVIDQLGFNDYFLIVWDI 334

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +A +N+I +G GRGS AGS+ AYAL ITD+DPL+F LLFERFLN DR+ MPD DID+ 
Sbjct: 335  VNFAYQNHIQLGAGRGSAAGSLVAYALRITDVDPLQFGLLFERFLNADRVQMPDIDIDWP 394

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL-IPND 482
             ++RD V++Y+ +KYG    AQI+TFG+L AK ALRD  R   +    + R+        
Sbjct: 395  DNKRDVVLKYLHDKYGQRNFAQILTFGTLAAKQALRDTARVFGVSQQMMSRISNAVPTGK 454

Query: 483  PAHPVSLQAIADDSR-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                VS+Q         ++          LL+++Q++EGL R+ STHAAG+V+    L  
Sbjct: 455  QGRKVSIQDALQAGDGLQKVLSEIDDGQLLLKVAQQIEGLPRNYSTHAAGVVLSADTLVH 514

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSL 600
             +P+      +  +TQF    +E  GL+K D LGL  L++L ++L     +     D+S 
Sbjct: 515  TLPVQ-SGTDERLLTQFEKDTVEALGLLKIDVLGLSNLSILAQTLYEARHQLPEHFDISR 573

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P DD  T  L     T GIFQ ES+G++  L  +QP   E I+A+ SLYRPGP  NI  
Sbjct: 574  VPLDDAATLALYAKGDTNGIFQFESAGIKHVLRQLQPATFEHIVAVNSLYRPGPSRNIES 633

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +  R++G E +      +  +L  T G+I+YQEQVM +A+  +G +L EADVLR AM KK
Sbjct: 634  FIKRRHGLEPVTVPDASLKTILAPTFGIIVYQEQVMLVAEAYAGLTLGEADVLRSAMSKK 693

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
               +M   +E+FI+GA   G  +  A  IF  + +FA+YGFN+SHA AY+ +S+Q A+MK
Sbjct: 694  KLTQMAAMQEKFINGAVALGHDRQEAAQIFAYIDEFANYGFNRSHAVAYSKLSFQLAYMK 753

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             HYP  F  A +   + + EK++ +  +A+   +Q+  P +N     + V    +   L 
Sbjct: 754  AHYPAAFFTAVLNANLGSPEKVRLYVAEAKARQLQVAAPHINQSQRFWTVNQGVLQMGLN 813

Query: 841  AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             I+G+ T     ++    A+ PF S++ F  R+  K   R  L  LV+AGALD FGY+RM
Sbjct: 814  NIRGLRTDFVATVLAERTANGPFQSIQSFVRRLPEKFRKRDTLRQLVYAGALDTFGYNRM 873

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            +L+ +LD++ + A              F        ++  ++K    + + +   E+  +
Sbjct: 874  ELVTALDDLIEAAS-------------FGDL---ILNETKIKKMPDWDLTEKLAYEKEAI 917

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIR-GNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            G   SG+PLD Y  ++     +   +          + + A++   +  +T+KG  + +V
Sbjct: 918  GVNLSGYPLDGYASLIADHNYQEIADLTEKTDKKQPVTVIALIDQVRTTRTKKGEEMAFV 977

Query: 1019 TFSEPAKEYEANFF 1032
            T S+         F
Sbjct: 978  TVSDATGTTSVTVF 991


>gi|307294093|ref|ZP_07573937.1| DNA polymerase III, alpha subunit [Sphingobium chlorophenolicum L-1]
 gi|306880244|gb|EFN11461.1| DNA polymerase III, alpha subunit [Sphingobium chlorophenolicum L-1]
          Length = 1159

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 243/1117 (21%), Positives = 437/1117 (39%), Gaps = 138/1117 (12%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS------ 59
              +P F  L   +++S L GA    +++ +        + I D N +   +         
Sbjct: 4    PDAPPFAELVAATNFSFLRGASHAQDMVTRAIILGLEGLGIADRNTVAGVVRAHVARKRW 63

Query: 60   ---------QKACAAG----------------IQPIIGCQLDIDMQDNLKMTNQGKTPFP 94
                     +    AG                ++ ++G +L                   
Sbjct: 64   PERMRAALLEARKEAGQPPELSEEEERACRTDLRLVVGARLVFADG-------------- 109

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL------------------ 136
              P IV   +T  G+ RL  L++R  L    K    +  + L                  
Sbjct: 110  -TPDIVAYPATRRGWGRLTRLLTRGNLR-AVKGGCILHFNDLLNYLDDLLLILLPEATGS 167

Query: 137  -QEIGTEGLIMLTGGSSGPIDRA--------FFFNSSQVAEKRLLTFKKLFGDRLYVNL- 186
             +E   + +            +A              +  E+ L         R+++ + 
Sbjct: 168  EEEAHGDPV----AYPFDDAPQAEAPSPLSLVPPLPPETVEESLRRLAAKAPGRVWLGVS 223

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDR 245
              H G DR     +  +A +  +PL+ATN++L+ +  D    DVL  + H T V++    
Sbjct: 224  HHHGGKDRRIADHLASVARSLSVPLLATNDALYAAPSDRPLQDVLNCIRHGTTVAKAGTL 283

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             +   + +LK   EM  + +  P+A+  ++ +     F L       P     E      
Sbjct: 284  LQANAERHLKPPDEMARLHALWPDAVAQSMRLLSMIDFDLDQLRYEYPHEPVPEGW---- 339

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              ++ L +        R               RQR++ EL  IA   ++ YFL V D ++
Sbjct: 340  SPQDWLAHLVWEAAARRY-----EGRTMPDPLRQRVEQELCFIAEHGYAYYFLTVHDVVK 394

Query: 366  WAKKNNIPV-GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            +A++   P+   GRGS A S   + L +T +DP R  LLF RF++ DR   PD D+DF  
Sbjct: 395  FAQEQKPPILCQGRGSAANSAVCFLLGVTSVDPERHDLLFSRFISADRGEPPDIDVDFEH 454

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            +RR+EV++Y+  +YG  R     T    ++++A+R+V +AL +      R+   +    +
Sbjct: 455  ERREEVMQYIYRRYGRHRAGIAATVIHYRSRSAVREVAKALGLSEDIAARIGSTVWGSYS 514

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
              +  Q + +                L ++ +  E   RH S H  G V+    L + VP
Sbjct: 515  GDLGEQRLIEAGFDLRNPQIVRLRALLDQLLR--EPFPRHLSQHVGGFVLTQDRLDETVP 572

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF- 603
            ++     D    +++   I+  GL+K D L L  L+ ++++ D + ++G+      +   
Sbjct: 573  IHHAAMEDRSFIEWDKDDIDALGLMKVDVLALGMLSCIRRAFDLMREQGLGDHQLTVDLE 632

Query: 604  -DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD   Y +L    ++G+FQ+ES      L  ++P  + D+   V++ RPGPI+  +V+ 
Sbjct: 633  ADDDAVYDMLCKGDSIGVFQVESRAQINMLPRLKPRSLYDLTVQVAIVRPGPIEGDMVHP 692

Query: 663  --NRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
               R+ G+EK+    P         +  +L +T GV ++QEQ M++A + + +S ++A+ 
Sbjct: 693  YLRRRCGEEKVDYPSPSPEHGPANELRSLLGKTCGVPLFQEQAMRLAIVAADFSDADANR 752

Query: 713  LRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRRAM        +   +E+ I G  K G     A   F+ +  F  YGF +SHA ++A 
Sbjct: 753  LRRAMATFRNVGTIHHFREKMIKGMVKRGYEAEFAQRCFKQIEGFGSYGFPESHALSFAR 812

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            + Y +AW+K H P  F  A +  +        +  +DAR   + +    VN    D  + 
Sbjct: 813  LVYVSAWIKCHQPAVFACALLNSQPMGFYAPAQIVRDARDHGVTVHDADVNMSGWDNGLE 872

Query: 832  DN----------------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                               +   L  I G     A  ++ A AD  F ++E+   R    
Sbjct: 873  PLLRLRKSHRGEGQGRALALRLGLRQIDGFREDWADRLVAARADGLFATMEELARRAGLP 932

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
                R L  L  A A    G  R   L              +   +    +FA  +    
Sbjct: 933  G---RALRLLADADACRSMGQDRRAALW-----------EARRTPSDELPLFAAARAREL 978

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
             +       V   S + E +  V      GHP+   +P+    G+    E+ A   G  +
Sbjct: 979  GEEPDAMLPVMPLSEQVEADYLVTRLSLKGHPMQFLRPVFAAEGVLSCAETAAAKNGARV 1038

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + A +V+ +Q+    KG+ + ++T  +         +
Sbjct: 1039 KTAGVVLVRQRPG--KGNAV-FITIEDETGIANILLW 1072


>gi|145294807|ref|YP_001137628.1| error-prone DNA polymerase [Corynebacterium glutamicum R]
 gi|140844727|dbj|BAF53726.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 1017

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 269/1030 (26%), Positives = 446/1030 (43%), Gaps = 98/1030 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   SSY+ L GA   ++++ +       A+++ D +  + A+ F++ A  AG+  +
Sbjct: 22   FAELHATSSYNFLTGASDPSDVVVQAKKLGLVALSVMDRDGFYGAVRFAEAAAEAGMHTV 81

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +                     + +L    EGY++L  L+S   +    K  VR
Sbjct: 82   YGAELSLQEGV-----------------LTVLCKNPEGYKKLSHLISDAKMATGEKGEVR 124

Query: 131  I-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
               L  + E      ++L G                    ++      F  + + +    
Sbjct: 125  YPPLPMVAEHAAGDWVVLAGF---------------QWLDKIDYVIDCFKSENIVLEFGS 169

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRP 246
                 D  R   + +     +L  + + N    +           A+AH  ++   +   
Sbjct: 170  TMTPEDADRNEYLRRTQVKFQLRGILSTNPESAARASVRLAGAKQALAHKMSLADAESEL 229

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  ++++   ++    D  + +  TVE+A  C+F L + AP LP++        +  
Sbjct: 230  HPMGTTWMRSGDTLLKAHPDYADLIATTVELAAECAFTLDLVAPNLPKWDTP----GEHT 285

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E + L +           +              ++D+EL VI ++ F GYFLIV D +++
Sbjct: 286  EMSWLAHLV---STRIDTRYVGRSADIKARAATQIDYELGVIEKLGFPGYFLIVNDLVEF 342

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             + +NI    GRGS A S   + L IT+ +P+   LLFERFL+PDR   PD DID    R
Sbjct: 343  CRDSNIL-CQGRGSAANSAVCFVLGITNAEPISAGLLFERFLSPDRDGPPDIDIDIESGR 401

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+YV  KYG +  AQ+    + + K A+RD  RAL  P    D   K         
Sbjct: 402  REEVIQYVYEKYGRDNAAQVANVITYRTKGAMRDAARALGYPQGAADAWAKGTS------ 455

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                                  D +LE++ + +G  RH   H+ G+VI DRP++ +VP+ 
Sbjct: 456  -------------------EPPDDVLELAAQFKGQPRHLGIHSGGMVICDRPIADVVPVE 496

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDD 605
                 +  V Q++      AGL+KFD LGL  L  +   LD +   RG K++L  +   +
Sbjct: 497  WARMDNRSVVQWDKDDCATAGLVKFDLLGLGMLEAIHHMLDLVAEHRGKKINLWELDLAE 556

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNN 663
             E Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y  
Sbjct: 557  PEVYDMLCKADAVGVFQVESRAQLSTLPRLKPRTFFDLVVEVALIRPGPIQGGSVHPYLR 616

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            R+ G+E I   HP+++  L +T G+ ++QEQ+MQ+A   +G+S  EAD LRRAM  K+  
Sbjct: 617  RRAGEEAITYDHPVLEKSLGKTLGIPLFQEQLMQVAVDAAGFSGGEADSLRRAMGSKRSP 676

Query: 723  EEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            E M   + RF  G    NGI    A  ++  +  FA YGF +SH+ ++A + Y +AW K 
Sbjct: 677  ERMAALRSRFFQGLKDTNGIVGETAEKLWNKIVAFAAYGFPESHSQSFASLVYFSAWYKY 736

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP EF    +  +       +    DAR+  + I+P +VN   V+    +  I   L  
Sbjct: 737  HYPAEFCVGLLRAQPMGFYSPQSLISDARRHGVSILPITVNDSGVEADAPNGAIRLGLNL 796

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            +KG+G   A+ I +   + PFDS+ D   R D   LN   +E+L  AGA+DC G  R Q 
Sbjct: 797  VKGLGHDAAQRIED---NAPFDSIPDLSRRAD---LNVAQVEALARAGAVDCLGVGRRQA 850

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L         A      +T     + A         I        ++           G 
Sbjct: 851  LWQ-------AGVAATEKTGMLPGLSA---------IEAPALPGMSAFELMATNISATGV 894

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
                 P+ + +  + ++GI   +  +    G  +R+A +V  +Q+ +T  G  + ++   
Sbjct: 895  TADYQPMALIRERMEELGIVPADRLLEVEDGTRLRIAGIVTHRQRPQTASG--LTFLGME 952

Query: 1022 EPAKEYEANF 1031
            +         
Sbjct: 953  DETGLMNVMV 962


>gi|260776316|ref|ZP_05885211.1| DNA polymerase III alpha subunit [Vibrio coralliilyticus ATCC
            BAA-450]
 gi|260607539|gb|EEX33804.1| DNA polymerase III alpha subunit [Vibrio coralliilyticus ATCC
            BAA-450]
          Length = 1023

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 250/1035 (24%), Positives = 430/1035 (41%), Gaps = 82/1035 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA--GIQ 68
            +  L   +++S L GA     ++ +    +  A+AITD  ++   +   +        I+
Sbjct: 3    YAELFCQTNFSFLTGASHAEELILQADFLRYHALAITDECSVAGVVRAYRAIKTHNLNIK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG    ++ +                  +VLL    E Y  L  +++      + K  
Sbjct: 63   LIIGSMFWLNDE----------------CQVVLLCPNREAYAELCRIITNARRRTE-KGQ 105

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             ++    L  +    ++ L                    +K      +    RL++ +QR
Sbjct: 106  YQLAEWDLMSLRHCLIVWLPSHQHSD-------------QKWGHWLAQHHQPRLWLGVQR 152

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    D+   +   +LA    +P+ A    L  +        VL AV H + V +  +  
Sbjct: 153  HLDADDKSYLTHCEELAQELMVPITACGGVLMHTANRLPLQHVLTAVRHGSSVDKIGKHL 212

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +T         E ++         E ++ +  +C F L+      P  +    +      
Sbjct: 213  LTNTERTLRSKEKLARLFKQEWL-EESIRLTEQCQFSLEKLKYEYPHELVPSGE----TP 267

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR    +G   R  +G        QD  + +D EL +I  + +  YFL + D + +A
Sbjct: 268  MSYLRKLVDSGKRRRFPEG------IPQDISETIDKELELIDELNYPYYFLTIHDIVMFA 321

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+ NI    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +RR
Sbjct: 322  KRQNILY-QGRGSAANSVVCYCLEITAVDPRQISVLFERFISKERDEPPDIDVDFEHERR 380

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KYG ER A   T  + + K+A+RDVG+AL +  SQ+D   K +       +
Sbjct: 381  EEVIQYIYQKYGRERAALAATVITYRFKSAVRDVGKALGIEESQLDYFIKNVNRRD-REL 439

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              QA   +   +   L       L+          RH S H  G VI   PL +LVP+  
Sbjct: 440  GWQAQIVELGLQPDSLKGEQFITLVNDILGF---PRHLSQHVGGFVIAAGPLYELVPVEN 496

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL---SLIPFD 604
               +   V Q++   +E   L+K D L L  L+ + K    + +   +           D
Sbjct: 497  ASMAGRTVIQWDKDDLESLKLMKVDVLALGMLSAIHKCFQLVKRFHQQDLTIAEITRRQD 556

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662
            D E Y ++    T+G+FQ+ES      L  ++P    D++  +++ RPGPI   +V+   
Sbjct: 557  DPEVYGMIQKADTVGVFQIESRAQMSMLPRLRPKTYYDLVIQIAIVRPGPIQGDMVHPFL 616

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R++G E +      +  +L  T GV I+QEQV+++A + +G+S  EAD LRRAM    K
Sbjct: 617  KRRDGIEPVTFPSDEVKDVLSRTMGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMASWKK 676

Query: 723  EEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
                 K + + I G    G  +  A  IF+ +  F +YGF +SH+A++AV++Y +AW+K 
Sbjct: 677  NGDLVKFRTKLIEGMLARGYEQEFAERIFDQILGFGEYGFPESHSASFAVLAYCSAWLKH 736

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNRIYY 837
            ++P  F A+ +           +  QDAR+ ++ I+P  VN    D +V        I  
Sbjct: 737  YHPEAFYASLLNSLPMGFYSASQLVQDARRHHVLILPVCVNQSHYDHQVVRCGNKLAIRL 796

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
                IKG    ++  +++A   + F              LN+R LE L  A A+     +
Sbjct: 797  GFRQIKGFSAESSLQLLKARGSEGFQHPRQL----KHIGLNQRDLELLASANAMQSIANN 852

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R Q   ++ +                  +F   +   SD I+       +       +  
Sbjct: 853  RFQTRWAMMDSLSD------------LPLFKDLEEPQSDSISKP-----SEVQTLLEDYS 895

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             +G   S HP+ + +           +E +     + + +  +V  KQ   T  G  + +
Sbjct: 896  SIGLSLSKHPITLLEQAGVLGRFTRMKELIHKPHQSLVTIVGVVTGKQAPGTAAG--VTF 953

Query: 1018 VTFSEPAKEYEANFF 1032
             T  + +       +
Sbjct: 954  FTLEDDSGNMNVVVW 968


>gi|295114593|emb|CBL33230.1| DNA polymerase III catalytic subunit, DnaE type [Enterococcus sp.
           7L76]
          Length = 930

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 296/938 (31%), Positives = 473/938 (50%), Gaps = 43/938 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SF  L   +SYSLL   + + + + +  A     +AITD N L  A+EF +    AGIQP
Sbjct: 2   SFPQLHTVTSYSLLSSTVRIRSYVKQAKALGYQTLAITDINVLHGAVEFYEACQEAGIQP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIG +L+    +                 ++L     +GYQ+L++L S     +      
Sbjct: 62  IIGLRLEYTPAEK-----------EGHSELLLFAKNLKGYQQLMQLSSSKMTTEGPFY-- 108

Query: 130 RICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
                 L E  +    L  +T  + G + + FF    Q A          F    L+V  
Sbjct: 109 ------LAEHQSLLSDLFAVTLSAKGEVAQTFFE-DEQQAVHAFQQLASYFDPQSLFVE- 160

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                 ++ R   +       +LP VA      L+ E+  A  VL ++  +  ++   + 
Sbjct: 161 -HSFSMNQQRNPALFSFYQREQLPGVALQEVRHLTREEGFAVTVLESIKENNQLNITSQT 219

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               +     R    ++   L  A    V+   + +   +V  P+  + +        + 
Sbjct: 220 -PEIEGLNYLREAETTMEQMLQIAGAEVVQNTIQLAENCRVDIPLHQKLLPHFPVPDNQT 278

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + LR   +  L  R+           + Y++RL+ EL +I  M F  YFLIV D + +
Sbjct: 279 AGSYLRTLCLEKLPERVPH-------LNEVYQKRLEKELTIIHNMGFDDYFLIVWDVMDF 331

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
              N I  G GRGS AGS+ +Y L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +R
Sbjct: 332 CHNNQIVTGAGRGSAAGSLVSYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNR 391

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+EV+ YV  KYGH  +AQI TFG++ AK  LRDV R   +  S+ +R    +PN     
Sbjct: 392 REEVLAYVSQKYGHYHMAQIATFGTMAAKMVLRDVARVFGLSQSEANRWSAAVPNKLKIT 451

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
           +      +  R +E     P+   L + + +LEGL RH STHAAG+VI D  L   VP+ 
Sbjct: 452 LEEA-YQESKRMQELVNFSPNNQLLYKTAVQLEGLPRHVSTHAAGVVISDENLLNSVPLQ 510

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
               +++ +TQF M  +EK GL+K DFLGL+ L+++  +L  + +     + L+ IP DD
Sbjct: 511 PGS-NEILLTQFTMNDVEKIGLLKMDFLGLRNLSIIDDTLTAIKRVYNQTIHLNQIPLDD 569

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T  L     T G+FQ ES+G+R  L  + P  IEDI A+ +LYRPGP+ NI V+  RK
Sbjct: 570 ETTLALFRKGETSGVFQFESAGIRNVLRKLGPTSIEDIAAVNALYRPGPMQNIDVFIRRK 629

Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            G E+I    P + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +
Sbjct: 630 KGLEQISYPEPSLAPILENTYGIIVYQEQIMQVAAKMAGFSLGQADILRRAISKKKKDVL 689

Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
           D+++  F++GA + G  +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP 
Sbjct: 690 DEERNHFVNGALQQGYPQETANQVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPS 749

Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKG 844
            F  A +     N  KIK++  +AR+    I+ PS+N     F +    +I +  +++KG
Sbjct: 750 AFYVALLHSVRHNPTKIKEYIGEARKNKQTILQPSINQSHYSFYLNQQQQILFGFSSLKG 809

Query: 845 VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
           +     ++I+ E   + P+ + ++F  R+D K L    +E L+  GA D    +R QL  
Sbjct: 810 IRRDFIQNILNERRENGPYKTFDEFLLRIDRKWLKVENIEPLIAIGAFDEIAPNRRQLAV 869

Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            L++  +         +    ++    K    +     
Sbjct: 870 GLESNIQSILL-----SGGSMDLLETLKPKEEEIADYP 902


>gi|254419943|ref|ZP_05033667.1| DNA polymerase III, alpha subunit subfamily, putative [Brevundimonas
            sp. BAL3]
 gi|196186120|gb|EDX81096.1| DNA polymerase III, alpha subunit subfamily, putative [Brevundimonas
            sp. BAL3]
          Length = 1121

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 229/1085 (21%), Positives = 413/1085 (38%), Gaps = 117/1085 (10%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK---- 61
               P++  L   S++S L GA    +++          + + D N +   +         
Sbjct: 5    NSPPAYAELAAASNFSFLRGASHPKSLVLSAILRGHTGLGLADRNTVAGVVRAWSALNTL 64

Query: 62   -------------------------------------ACAAGIQPIIGCQLDIDMQDNLK 84
                                                 A A   + + G +L  +      
Sbjct: 65   RVEGLSPPEKVRDGGGPGETGFVEDLMNDPALSDMVEARAQDFRLLTGARLAFNDG---- 120

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
                        P I+       G+ RL  L++        K    I +S L        
Sbjct: 121  -----------TPDIIAYAEDRAGWGRLTRLLTLGNRR-AVKGQCEIGISDLL------- 161

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV-NLQRHRGYDRYRESQVVQL 203
                G   G +         +     L   +      +++      +G DR R +++  +
Sbjct: 162  ----GDPEGLLLIVIPERHLEALPPLLSRLEAAAPGSVWLSAAMLRQGDDRRRLTRLKAI 217

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVS 262
            A   ++PL+A N+ L+    + +  DVL  +    T+ +   R     + +LK  +EM  
Sbjct: 218  ANVADVPLLAINDVLYHDPSERDLQDVLTCIREGVTIEAAGRRLLANAERHLKPPAEMAR 277

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
            +F+D PEALE T  +  R  F L+      P+             +  L +      ++R
Sbjct: 278  LFADAPEALEQTQLLLDRARFDLKDLTYNYPQEPTPPGW----SSQAYLEDLTWRHAQIR 333

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
               G  A           L+ EL  I    F+ YFL + D ++ A    I    GRGS A
Sbjct: 334  YPGGVSA------KVTDLLNKELAFIQIQGFAPYFLTIHDIVRVANSKGIL-CQGRGSAA 386

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
             S   Y L IT +DP    LLFERFL+  R   PD D+DF  +RR+E+I+++ ++YG  R
Sbjct: 387  NSAVCYVLGITCVDPAENDLLFERFLSDHRGEPPDIDVDFEHERREEIIQHIYDRYGRHR 446

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
                 T    + K+A+R+VG+ L +      RL           +    +          
Sbjct: 447  AGIAATVIRYRPKSAIREVGKVLGLTEDVTARLAASQWGSWGAEIGDCHVEQ----AGLD 502

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
             A+P + R + ++ +L G  RH S H  G ++    L +LVP+      D    +++   
Sbjct: 503  PANPMIGRAVAMASRLLGFPRHLSQHVGGFILTQDRLDELVPIGNAAMPDRTFIEWDKDD 562

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIF 621
            I+   L+K D L L  LT ++K+L+ +        +L  +P +  + Y +L    ++G+F
Sbjct: 563  IDDLRLMKVDVLALGMLTCIRKALNLMHAHDDAAYELHTVPNEQADVYDMLCKGDSIGVF 622

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK---------NGKEKIV 672
            Q+ES      L  ++P    D++  V++ RPGPI   +V+   +           K    
Sbjct: 623  QVESRAQINMLPRLKPRTFYDLVIQVAIVRPGPIQGDMVHPYLRRRAKLEEPEYSKPAPP 682

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEEMDKQKER 731
                 +  +L +T GV ++QEQ M++A + + ++  EA+ LR+AMG       + K + R
Sbjct: 683  HDPDELKKVLHKTLGVPLFQEQAMKVAMVAAEFTPKEANGLRKAMGTFRGDGTLWKYEGR 742

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
             ++   + G  +  A   F+ +  F  YGF +SHAA++  + Y ++++K  YP  F  A 
Sbjct: 743  MVNRMVERGYERDFAQRCFDQIKGFGSYGFPESHAASFGKLVYISSFIKCRYPAAFACAL 802

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----RIYYSLAAIKGVGT 847
            +  +        +  +DA++  ++I P  VN    D  +        +      I G   
Sbjct: 803  LNSQPMGFYAPAQIVRDAQEHGVEIRPIDVNLSDWDNTLEGPPGLLALRLGFRQIDGFRE 862

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              A+ ++ A + + F+ +E    R          +  L  A A    G  R + L ++  
Sbjct: 863  EWAKALVVARS-RSFEGVEALAGRASLPG---SAMRKLADADAFRSIGMDRREALWAVRR 918

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +   A             +FA        +    +            + +        HP
Sbjct: 919  LPDDA----------PLPLFAAADARELGEEDDARLPRMALGEHVAADYQTTRLSLKAHP 968

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            + + +PI          E      G  +R A +V+ +Q+    KG+   ++T  +     
Sbjct: 969  MAILRPIFAAENTLTCAELETRRSGAKVRTAGVVLVRQRPG--KGNA-IFITLEDETGVT 1025

Query: 1028 EANFF 1032
                +
Sbjct: 1026 NLVLW 1030


>gi|17375431|sp|P74750|DPO3A_SYNY3 RecName: Full=DNA polymerase III subunit alpha; Contains: RecName:
           Full=Ssp dnaE intein
          Length = 1355

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 281/786 (35%), Positives = 440/786 (55%), Gaps = 43/786 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+      PAIA+TD   ++ A+E  +      I+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPALIDRAIELGMPAIALTDHGVMYGAVELLKVCRGKPIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD----QG 125
           IIG ++ +   D        +         V+L    +GY+ L++L +   L        
Sbjct: 62  IIGNEMYVINGDIEINKRHRR------FHQVVLAKNNQGYRNLVKLTTISNLKGIQGSGI 115

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L++   EGLI+ +    G + +A        A +    +K LFGD  Y+ 
Sbjct: 116 FARPCINKELLEQY-KEGLIVTSACLGGEVPQAILKGDLDHARQVAKWYKNLFGDDYYLE 174

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR     +V++A   ++ +VATN+S F+S  D EAHD L+ +    +++++ 
Sbjct: 175 IQDHGSVEDRLVNINLVKIAQELDIKIVATNDSHFISCNDVEAHDALLCIQTGKLITEEK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           R R +   YLK+  EM  +F D    + +E  +      +  ++ ++ +    I      
Sbjct: 235 RLRYSGTEYLKSAEEMHLLFRDHLPDDIIETAIANTLEVADKVEAYSILGEPRIPHYPIP 294

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                E  + + A  GL  RL      +      Y++RL++EL ++ +M F  YFL+V D
Sbjct: 295 PNHTPETYVEDIAWDGLLERLKC--RERADITPVYKERLEYELRMLEKMGFCTYFLVVWD 352

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           +I++A+ + IPVGPGRGS AGS+ AY + IT+IDP+   L+FERFLNP+R SMPD D DF
Sbjct: 353 YIKYARDHGIPVGPGRGSAAGSLVAYCMKITNIDPVHHGLIFERFLNPERKSMPDVDTDF 412

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           C DRRDE+I YV  KYG ++VAQIITF  + +KA L+DV R L +PY++ D++ K+IP  
Sbjct: 413 CIDRRDEMIEYVTQKYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYAESDKMAKMIPVS 472

Query: 483 PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
              P  L+ +      + +F+     +P V + ++++ ++EG  +    HAAG+VI   P
Sbjct: 473 RGKPAKLKVMISDQTPEPQFKARYDNEPWVKKWIDMAIRIEGTNKTFGVHAAGVVISSEP 532

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
           L Q+VP+ ++      +TQ+ M+ +E  GL+K DFLGLK LT LQ++++ +A+       
Sbjct: 533 LDQIVPLQKN-NDGAVITQYYMEDVEAMGLLKMDFLGLKNLTTLQRAVELVAETKGIELD 591

Query: 599 SLIPFDDHE--------------------TYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                                        T+ LL      GIFQLES GM+Q +  ++P 
Sbjct: 592 LDDLPLQERKALQIRARTGSKKLPDDVKKTHKLLEAGDLEGIFQLESQGMKQIVRDLKPS 651

Query: 639 CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            IEDI ++++LYRPGP+D   I ++ NRK+G+E+I   H L++P+L ET GV++YQEQ+M
Sbjct: 652 GIEDISSILALYRPGPLDAGLIPIFINRKHGREEISYQHKLLEPILNETYGVLVYQEQIM 711

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
           ++AQ L+ YSL EAD+LRRAMGKK  EEM K + +F+ G++K+G+   IA N+F+ + KF
Sbjct: 712 KMAQDLADYSLGEADLLRRAMGKKKAEEMQKHRAKFVDGSTKHGVPSRIAENLFDQMVKF 771

Query: 757 ADYGFN 762
           A+Y  +
Sbjct: 772 AEYCLS 777



 Score =  260 bits (664), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 86/295 (29%), Positives = 147/295 (49%), Gaps = 16/295 (5%)

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
              A   FNKSH+ AYA ++YQTA++K +YPVE++AA +T   D+ EK++K+ ++ ++  I
Sbjct: 929  AIAANCFNKSHSTAYAYVTYQTAYLKANYPVEYMAALLTASSDSQEKVEKYRENCQKMGI 988

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS---ADKPFDSLEDFCSR 871
             + PP +N     F      I + L+A++ +G      I+ A     +K F SL DFC++
Sbjct: 989  TVEPPDINRSQRHFTPLGEAILFGLSAVRNLGEGAIEQIITARDNSEEKRFKSLADFCTQ 1048

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--- 928
            VD + +NRR +E+L+ AGA D    +R QLL  L+ +  +AQ   K +     NIF    
Sbjct: 1049 VDLRVVNRRAIETLIMAGAFDGVQSNRNQLLHDLELVIAWAQKRAKEKETGQLNIFDSLT 1108

Query: 929  ---------HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                          F  + +    +  +   + + E+  LGFY S HPL   +   R + 
Sbjct: 1109 AGESIKAKEAANNGFEQEPSAPPVAEFSLQEKLQLEKEHLGFYVSEHPLKSVQRSARLLS 1168

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
                 +         +   A++V+ ++  T+K G  + ++T  + + + EA  FP
Sbjct: 1169 PINLVDLDQYKVRQKVSAVAILVAVKKIITKKNGQPMAFLTLEDMSGQSEAVVFP 1223


>gi|94497867|ref|ZP_01304433.1| DNA polymerase III, alpha subunit [Sphingomonas sp. SKA58]
 gi|94422756|gb|EAT07791.1| DNA polymerase III, alpha subunit [Sphingomonas sp. SKA58]
          Length = 1218

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 246/1119 (21%), Positives = 444/1119 (39%), Gaps = 142/1119 (12%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA--- 64
            +P+F  L   +++S L GA   ++++ +        I I D N +   +           
Sbjct: 59   APAFAELVAATNFSFLRGASHASDMVARAMELGLAGIGIADRNTVAGVVRAHVARKKAQE 118

Query: 65   ------------AGIQP----------------IIGCQLDIDMQDNLKMTNQGKTPFPTV 96
                        AG+ P                I+G +L                     
Sbjct: 119  RARAALLEAKAQAGLPPDLSADEEAACHIDLHLIVGARLVFADG---------------T 163

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE-GLIMLTGGSSGPI 155
            P IV   +T  G+  L +L++   L    K    +    L     +  LI+L   ++   
Sbjct: 164  PDIVAYPATRRGWGELTKLLTVGNLR-AVKGGCILHYEDLTAYLDDLLLIVLPTSTATEQ 222

Query: 156  DRAFFFNSSQVAEKRLLTFKKL------------------------FGDRLYVNLQ-RHR 190
                       A++      +                           +R+++    R  
Sbjct: 223  QVHRNPVDYDFADRPPGELVQHGHLSLVPPPRPADLAALLRRLARLAPERVWLGAPLRRD 282

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-T 249
            G D  R ++  +L+    +PL+AT ++L+ S       DVL  +   T + +  R     
Sbjct: 283  GRDARRLARFQRLSDRAGVPLLATMDALYASPAQRPLQDVLTCIRAGTTIGKAGRRLEAN 342

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             + +L + +E+  ++   P+A+  T    RR  F L       P     E        + 
Sbjct: 343  AERHLHDPAEIARLYRACPDAVAQTAVFLRRIRFSLDQLRYEYPHEPVPEGW----TAQQ 398

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L    ++    R               RQ LD E ++IAR +++ YFL V D + +A+ 
Sbjct: 399  WLEELTLSAAHARYGPH------IPYQVRQLLDEEFSLIARQRYAYYFLTVYDIVAFART 452

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A S+  + L +T +DP +  LLF RF++ +R   PD D+DF  +RR+E
Sbjct: 453  KGIL-CQGRGSAANSMVCFLLGVTSVDPQKHDLLFSRFVSEERDEPPDIDVDFEHERREE 511

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V++Y+ ++YG  R     T    ++++A+R+V + L +    V RL   I    A  ++ 
Sbjct: 512  VMQYIYDRYGRHRAGIAATVIHYRSRSAIREVAKVLGLSDDIVTRLSSTIWGSYARDMNE 571

Query: 490  QAIADDSRFREARLADPSVDRLLEISQK--LEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            Q I++        LA+P + RL E+  +       RH S H  G ++    L + VP++ 
Sbjct: 572  QRISE----AGFDLANPQIVRLRELVGQLLEAPFPRHLSQHVGGFILTQNRLDETVPLHH 627

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD--D 605
               +D    +++   I+  GL+K D L L  LT ++K+ D +   G+     ++  +  D
Sbjct: 628  AAMADRSFIEWDKDDIDALGLMKVDVLALGMLTCIRKAFDLMRDHGLGDHQLVVDLNADD 687

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
               Y +L    ++G+FQ+ES      L  ++P  + D+   V++ RPGPI+  +V+   +
Sbjct: 688  PAVYDMLCRGDSIGVFQVESRAQINMLPRLRPRELYDLTVQVAIVRPGPIEGDMVHPYLR 747

Query: 666  N--------GKEKIVSIHP-LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
                             +P  +  +LK+T GV ++QEQ M++A + + ++ S+A+ LRR+
Sbjct: 748  RRAGLEKPEFPSPDPPHNPNELRDLLKQTYGVPLFQEQAMKLAIVAAEFTPSQANQLRRS 807

Query: 717  MGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M        MDK +E+ I G  + G  +  A   +  +  F  YGF +SHA ++A + Y 
Sbjct: 808  MATFRHVGGMDKFREKMIGGMVRRGYKRDFAERCYSQIEGFGSYGFPESHALSFARLVYV 867

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD--- 832
            +AW+K H P  F  A +  +        +  +DAR+  + I    VN    D  +     
Sbjct: 868  SAWIKCHQPAVFACALLNSQPMGFYAPAQLVRDAREHGVTIHGVDVNMSRWDNHLEPLLR 927

Query: 833  -------------NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLN 878
                           +      + G   + A  ++ A AD   F ++ED   R     L 
Sbjct: 928  SRRSDRGEGAGRALALRLGFRQVDGFRESWATQLVAARADGGLFTNMEDLARRA---GLP 984

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKI 938
             R L  L  A A    G  R   L              +   +    +FA  +    D  
Sbjct: 985  ARALRLLADADACRSLGQDRRAALW-----------EARRTPSDELPLFAAARQRQGDAR 1033

Query: 939  TL-----EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
             L      +      + +   +  +      GHP+   +P+    G+    ++ A   G 
Sbjct: 1034 ELGAEPDAQLPAMPLAEQVTTDYAMTRLSLKGHPMQFLRPVFAAEGVLSCAQAGAAKNGA 1093

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +R+A +V+ +Q+    KG+ + ++T  +         +
Sbjct: 1094 KVRVAGVVLVRQRPG--KGNAV-FITIEDETGIANILLW 1129


>gi|323342047|ref|ZP_08082280.1| DNA-directed DNA polymerase III alpha subunit [Erysipelothrix
            rhusiopathiae ATCC 19414]
 gi|322464472|gb|EFY09665.1| DNA-directed DNA polymerase III alpha subunit [Erysipelothrix
            rhusiopathiae ATCC 19414]
          Length = 1030

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 329/1025 (32%), Positives = 519/1025 (50%), Gaps = 54/1025 (5%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HL V S YSLL+G + +  I +K   ++  +IA+TD + LF AL+F   A    I+PI 
Sbjct: 12   THLMVRSHYSLLKGMMPVELICEKAKHNESKSIALTDRHVLFGALDFYDAARKHHIKPIY 71

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ I                 +    ++L  T EGYQ LI L    YLL +      I
Sbjct: 72   GMEITI-------------LEDESYYDSLVLARTNEGYQGLIHLS---YLLSKQAY---I 112

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190
              + +    +E LI +     GP ++     +       +   KK+F    Y+ L     
Sbjct: 113  SEADVVPFESE-LIFIAYSEQGPFEKGMLSKNLDEVANTMERLKKMFS-YFYIGLSHQES 170

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
            G+      Q+ Q+A   E+  VA     + +++D EA   L A+  ST +  K       
Sbjct: 171  GFFSNVNDQLRQMAVLREIECVALPKVYYENKDDEEAFRALQAIDKSTYLEDKTLVSSPN 230

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +++ +    V          +   E+       L+   P      E          +  
Sbjct: 231  RNFISDDDFKVLYTEAELSLTDTIAEMCNVSIMNLKTELPEFETHQE-------VSNKVF 283

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L   +  GL+ RL           + YR+RL++EL +I  M F+ YFLIV D I++AKK 
Sbjct: 284  LEQLSHFGLKRRL------NNSVPEKYRERLNYELKIINEMNFTDYFLIVYDVIRYAKKA 337

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I VGPGRGS AGS+ AY L I +IDP+ + LLFERFLNP+R+SMPD DIDF  D+R  V
Sbjct: 338  GIYVGPGRGSSAGSLVAYCLGIVEIDPIEYDLLFERFLNPERVSMPDIDIDFPDDKRQYV 397

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I YV+NKYG + VA I+TFG+L+A+ A RD  R LQ+P  +VD++ KLI           
Sbjct: 398  IDYVRNKYGDDYVAHIVTFGTLKARQAFRDTARVLQVPIRKVDQVSKLIDPMMG---LRD 454

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +SRF+    ++  + +  E++ K+EG+ RH STHAAGIV+  +PL  +VP+ +   
Sbjct: 455  NYNKNSRFKSLIQSEDLLKKTFELACKIEGMPRHTSTHAAGIVLSKKPLDVVVPVIQLDS 514

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
                V  + M  +E  GL+K DFLGL+ LT++      + +     D+  IP DD +TY 
Sbjct: 515  ETKAVQ-YEMSHLESIGLVKIDFLGLRNLTIIDNISRQINESE-AFDIMSIPLDDQKTYE 572

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L++   T+G+FQLES GM+  L+ ++P    DI+  V+L+RPGP++NI +Y   ++  EK
Sbjct: 573  LISRAETVGVFQLESDGMKALLKKVKPHKFSDIVDTVALFRPGPMENIPLYLENRDHPEK 632

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  IH  +  + + T G++IYQEQ+MQ+AQ+++G+SL+ AD+LR+AMGKK  +E+D  K 
Sbjct: 633  VKYIHDDLKRITESTNGILIYQEQIMQVAQIMAGFSLARADILRKAMGKKNAKELDGLKT 692

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G    G  +T A  +F L+ KFA+YGFNKSH+ AY +I+YQ +++K +YP  F   
Sbjct: 693  EFIQGCIDKGHKETFAEELFSLIYKFANYGFNKSHSVAYGLIAYQLSYLKANYPHLFYTY 752

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +T  + +  K +++  + R+  + + P ++      + +    I      IKG+  +  
Sbjct: 753  LLTSVIGSEVKTRQYIDECRRRKVDLRPVNLEQSRNSYTLEGYAIRLPFTVIKGISKSIG 812

Query: 851  RHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
              I  E   + P+ +  +  SR++   + +   E L+ AGA D     R+ ++ SL+   
Sbjct: 813  TKIQNEVHDNGPYLNYYNAISRLNLVGIKKNQFELLIQAGAFDYLNSDRLSMIASLEEAL 872

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            +YA  +   + +   ++          +      S  N      +E  VLGFYFS HP  
Sbjct: 873  RYANIIRVEK-DGQSSL----NMDLISEPIFTVVSE-NRRQVLNDELVVLGFYFSEHP-- 924

Query: 970  VYKPILRKMGIKGYEESVATI-RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                 LR       +  +    R    R+ AMV   +  +T+KG ++ ++  S+     +
Sbjct: 925  ----TLRLKKKHESDSLIEVKVRDKYFRIIAMVDRIKLHRTKKGDQMAFIQLSDDTGLID 980

Query: 1029 ANFFP 1033
               FP
Sbjct: 981  GVVFP 985


>gi|119512710|ref|ZP_01631782.1| DNA polymerase III subunit alpha [Nodularia spumigena CCY9414]
 gi|119462630|gb|EAW43595.1| DNA polymerase III subunit alpha [Nodularia spumigena CCY9414]
          Length = 876

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 298/786 (37%), Positives = 448/786 (56%), Gaps = 43/786 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D   +    AIA+TD   ++ A+E  +   +  I+P
Sbjct: 2   SFVPLHIHSDYSLLDGASQLPELVDHAISLGMKAIALTDHGVMYGAVELIKICRSKSIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ I   D  K   + K         V+L    +GY+ L+++ +  +L   QGK  
Sbjct: 62  IIGNEMYIINGDFTKQERRPK------YHQVVLAKNTQGYKNLVKITTISHLDGVQGKGI 115

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L++   EGLI+ +    G I +A   N    A K    +K++FGD  Y+ 
Sbjct: 116 FSRPCINKDLLKQY-REGLIVTSACLGGEIPQAILSNRPDAARKIAKWYKEIFGDDYYLE 174

Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR    ++V++A    +  +ATN+S F+S  D EAHD L+ +    ++S+  
Sbjct: 175 IQDHGSQEDRIVNVEIVKIARELNIKFIATNDSHFISCFDVEAHDALLCIQTGQLISEDK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           R R +   YLK+  EM  +F D    + +   +      +  + V+  +    I      
Sbjct: 235 RMRYSGTEYLKSADEMKQLFRDHLPDDIIAEAIATTEEVADKVGVYDIMGDPQIPTPPIP 294

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                +      A  GL  RL     ++      Y++RL++EL ++  M FS YFL+V D
Sbjct: 295 SGHTPDTYAEEVAWNGLLERL--NRKSRSEVDPVYKERLEYELKMLQTMGFSTYFLVVWD 352

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           +I++A+ NNIPVGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 353 YIKFARDNNIPVGPGRGSAAGSLVAYAMKITNIDPVHHGLLFERFLNPERKSMPDIDTDF 412

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           C ++RD+VI YV  KYG +RVAQIITF  L +KA L+DV R L +PY + D++ KLIP  
Sbjct: 413 CIEKRDKVIEYVTEKYGKDRVAQIITFNRLTSKAVLKDVARVLNIPYGEADKMAKLIPVV 472

Query: 483 PAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
              P  L+ +  D      F+E    +  V   L+++ ++EG  ++   HAAG+VI   P
Sbjct: 473 RGKPTKLKVMISDKTPAPEFKERYDNNAHVRHWLDMAIRIEGTNKNFGVHAAGVVISADP 532

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD- 597
           L ++VP+ R+      +TQ+ M+ +E  GL+K DFLGL+ LTL+Q+++D + +       
Sbjct: 533 LDEIVPLQRN-NDGSVITQYFMEDLESMGLLKMDFLGLRNLTLIQRTIDLIEETKGYRID 591

Query: 598 -------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                               S +P D  ++Y LL      GIFQLESSGMRQ +  ++P 
Sbjct: 592 PDEITGQERKAQKILAKGEHSNLPKDVKKSYELLEAGELEGIFQLESSGMRQIVRDLKPS 651

Query: 639 CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            IEDI ++++LYRPGP+D   I  + NRK+G+E I     +++P+L ET G+++YQEQ+M
Sbjct: 652 NIEDISSILALYRPGPLDAGLIPKFINRKHGREAIDYQSAILEPILNETYGIMVYQEQIM 711

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
           +IAQ ++GYSL +AD+LRRAMGKK   EM KQ+E+F+ GA+KNG+ K +A  +FE + KF
Sbjct: 712 KIAQDMAGYSLGQADLLRRAMGKKKVSEMQKQREKFVDGAAKNGVKKQVADELFEQMLKF 771

Query: 757 ADYGFN 762
           A+Y  +
Sbjct: 772 AEYCLS 777


>gi|227832328|ref|YP_002834035.1| DNA polymerase III, alpha subunit [Corynebacterium aurimucosum ATCC
            700975]
 gi|227453344|gb|ACP32097.1| DNA polymerase III, alpha subunit [Corynebacterium aurimucosum ATCC
            700975]
          Length = 1045

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 265/1033 (25%), Positives = 423/1033 (40%), Gaps = 98/1033 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   SSYS L GA     ++ +        IA+ D +  +  ++F++ A   G+  +
Sbjct: 48   FAELHAVSSYSFLRGASEPEELVARAVDLGLWGIALVDRDGFYGLMKFAEAAAKVGLPAV 107

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +D                    + +L  T EGY+RL  L+SR ++    K    
Sbjct: 108  FGAELSLDPAP-----------------LTVLARTPEGYRRLSRLISRAHMEAGEKG--V 148

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    L EIG +             D   F    +  E   L    +  D + +     +
Sbjct: 149  VSYPSLAEIGAQ-----------LQDECLFLVGWEWVEHFDLLVDGIKIDSMVLEYACTQ 197

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              +      ++       LP+     +   +    E   +  A    +            
Sbjct: 198  LPEDADHHLLMD-----SLPVPRAIATARPAAAAREHARLAGAKQALSRRLALADASPNS 252

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                 +        + L       +    R           L   +          E + 
Sbjct: 253  HPMGSSWLRSGEQMARLLPERPELIAETVRVLEECSFTWEALAPNLPDFDVPEGHTEMSW 312

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L +          A+ A       +   +++ +EL V+ ++ F GYFLIV D + + K+ 
Sbjct: 313  LEHLTFE---RAAARYATRPKEIRERAWEQMRYELGVVKQLGFPGYFLIVCDLVDFCKRE 369

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            NI    GRGS A S   +AL IT+ +P+   LLFERFL+PDR   PD DID    RR+EV
Sbjct: 370  NIL-CQGRGSAANSAVCFALGITNAEPISAGLLFERFLSPDRDGPPDIDIDIESGRREEV 428

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YV  K+G ER AQ+    + + K ALRD  RAL  P    D   K I           
Sbjct: 429  IQYVYAKHGRERAAQVANVITYRRKGALRDAARALGYPQGSADAWSKGIA---------- 478

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                           P+   +  ++ +  G  RH   H+ G+V+ DRP++ +VP+     
Sbjct: 479  ---------------PAPSDVESLADQFLGQPRHLGIHSGGMVLCDRPIADVVPVEWARM 523

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETY 609
             +  V Q++      AGL+KFD LGL  L  L   +D + +  G  V+L  +   D E Y
Sbjct: 524  ENRSVLQWDKDDCAAAGLVKFDLLGLGMLEALHHMMDLVEESTGRMVNLWELDLADSEVY 583

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKNG 667
             +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y  R++G
Sbjct: 584  DMLCRADAVGVFQVESRAQLSTLPRLKPRVFFDLVVEVALIRPGPIQGGSVHPYLRRRDG 643

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            KE +   HP+++  L +T G+ ++QEQ+MQIA   +G+S +EAD LRRAMG K       
Sbjct: 644  KEPVTYDHPVLEKSLGKTLGIPLFQEQLMQIAVDAAGFSGAEADDLRRAMGSKRSPAKMA 703

Query: 728  QKERFISGASK--NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
              ++      +  NGI   +A  ++  +  FA YGF +SH+ ++A + Y +AW K +YP 
Sbjct: 704  ALKQRFYEGLEETNGIVGEVADKLWAKIVAFAAYGFPESHSQSFASLVYFSAWFKRYYPA 763

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYSLA 840
            +F    +  +       +   QDAR+  ++++P SVN    + +V     G  RI   L 
Sbjct: 764  QFCVGLLRAQPMGFYSPQSLIQDARRHGVEVLPVSVNESGREARVVVGADGQTRIRLGLN 823

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             IKG+G   A  I  A    PF  + D   R D   L    +E+L  AGALD FG  R Q
Sbjct: 824  LIKGLGDKAADRIEAA---APFAGVPDLSRRAD---LTVDHVEALAVAGALDVFGVDRRQ 877

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             L         A      R      + A         I        ++      +    G
Sbjct: 878  ALWQ-------AGVAATERAGMLPGLSA---------IEAPFLPGMSAFELMAADVASTG 921

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
               +  P++  +  L+  GI    +      G  +R+A +V  +Q+ +T  G  + +   
Sbjct: 922  VTHNQQPMEQVRGELQSRGILAAADLPGVEDGTRVRIAGVVTHRQRPQTAGG--VVFFGL 979

Query: 1021 SEPAKEYEANFFP 1033
             +          P
Sbjct: 980  EDETGLMNVMVSP 992


>gi|166366657|ref|YP_001658930.1| DNA polymerase III subunit alpha [Microcystis aeruginosa NIES-843]
 gi|166089030|dbj|BAG03738.1| DNA polymerase III alpha subunit [Microcystis aeruginosa NIES-843]
          Length = 874

 Score =  505 bits (1301), Expect = e-140,   Method: Composition-based stats.
 Identities = 301/785 (38%), Positives = 455/785 (57%), Gaps = 43/785 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+     QPAIA+TD   ++ A+E  +     GI+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPALIDRAIELGQPAIALTDHGVMYGAIELIKTCRNKGIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ +   D        K         V+L    +GY+ L++L +   L   QGK  
Sbjct: 62  IIGNEMYVVNGDIEVNLRHRK------YHQVVLAKNTQGYKNLVKLTTISNLKGIQGKGI 115

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    LQ+   EGLI+ +    G I +A   N+ ++A++    +KKLFGD  Y+ 
Sbjct: 116 FARPCINKELLQQYH-EGLIVTSACLGGEIPQAILANNRKLAKETAKWYKKLFGDDFYLE 174

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR    ++V++A    + +VATN+S F+S  D EAHD L+ +  + ++++  
Sbjct: 175 IQDHGSKEDRIVNVEIVKIAKELGIKVVATNDSHFISCYDVEAHDALLCIQTAKLITEDK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           R R +   YLK+  EM  +F D    + +E  +      +  ++ +       +      
Sbjct: 235 RLRYSGTEYLKSADEMRLLFRDHLPEDVIEEAINNTLEVAEKVEPYNIFNEPRLPNYPVP 294

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                ++ +   A  GL  RL     ++      Y++RL++EL ++ +M FS YFL+V D
Sbjct: 295 AGHTADSYVEEIAWLGLLERLKC--PSRHEIEPVYKERLEYELKMLQKMGFSTYFLVVWD 352

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           +I++A+ ++IPVGPGRGS AGS+ AY+L IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 353 YIKYARDHDIPVGPGRGSAAGSLVAYSLKITNIDPVHHGLLFERFLNPERKSMPDIDTDF 412

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           C +RRDE+I+YV  KYG   VAQIITF  + +KA L+DV R L +PY++ D++ K+IP  
Sbjct: 413 CIERRDEMIQYVTEKYGEANVAQIITFNRMTSKAVLKDVARVLDIPYAESDKMAKMIPVS 472

Query: 483 PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
              P  L+ +      +  F+E    +P V   L+++ ++EG  +    HAAG+VI  +P
Sbjct: 473 RGKPTPLKVMISDETPEPAFKERYDTEPHVRHWLDMAIRIEGTNKTFGVHAAGVVISSQP 532

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD- 597
           L ++VP+ ++      +TQ+ M+ +E  GL+K DFLGL+ LT L+K+ D + Q       
Sbjct: 533 LDEVVPLQKN-NDGAVITQYFMEDLESLGLLKMDFLGLRNLTTLKKTADLIKQNQGIDID 591

Query: 598 -------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                                 +P D  +T+ LL      GIFQLESSGM+Q ++ ++P 
Sbjct: 592 LDQLPLDERKALQIRAKGEHKKLPPDILKTHGLLEEGDLEGIFQLESSGMKQIVKELKPS 651

Query: 639 CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            IEDI ++++LYRPGP+D   I ++  RK+G+E I   HPL++P+LKET  V++YQEQ+M
Sbjct: 652 GIEDISSILALYRPGPLDAGLIPLFIGRKHGREPIRYDHPLLEPILKETYAVLVYQEQIM 711

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
           ++AQ L+GYSL EAD+LRRAMGKK   EM KQ+E FI GA+KNG+ K IA N+FE +  F
Sbjct: 712 KMAQDLAGYSLGEADLLRRAMGKKKASEMQKQREMFIDGAAKNGVEKRIAENLFEQMVNF 771

Query: 757 ADYGF 761
           A+Y  
Sbjct: 772 AEYCL 776


>gi|159026760|emb|CAO86641.1| dnaE [Microcystis aeruginosa PCC 7806]
          Length = 874

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 301/785 (38%), Positives = 455/785 (57%), Gaps = 43/785 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+     QPAIA+TD   ++ A+E  +     GI+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPALIDRAIELGQPAIALTDHGVMYGAIELIKTCRNKGIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ +   D        K         V+L    +GY+ L++L +   L   QGK  
Sbjct: 62  IIGNEMYVVNGDIEVNLRHRK------YHQVVLAKNTQGYKNLVKLTTISNLKGIQGKGI 115

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    LQ+   EGLI+ +    G I +A   N+ ++A++    +KKLFGD  Y+ 
Sbjct: 116 FARPCINKELLQQYH-EGLIVTSACLGGEIPQAILANNRKLAKETAKWYKKLFGDDFYLE 174

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR    ++V++A    + +VATN+S F+S  D EAHD L+ +  + ++++  
Sbjct: 175 IQDHGSKEDRIVNVEIVKIAKELGIKVVATNDSHFISCYDVEAHDALLCIQTAKLITEDK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           R R +   YLK+  EM  +F D    + +E  +      +  ++ +       +      
Sbjct: 235 RLRYSGTEYLKSADEMRLLFRDHLPEDVIEEAINNTLEVAEKVEPYNIFNEPRLPNYPVP 294

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                ++ +   A  GL  RL     ++      Y++RL++EL ++ +M FS YFL+V D
Sbjct: 295 AGHTADSYVEEIAWLGLLERLKC--PSRHEIEPVYKERLEYELKMLQKMGFSTYFLVVWD 352

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           +I++A+ ++IPVGPGRGS AGS+ AY+L IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 353 YIKYARDHDIPVGPGRGSAAGSLVAYSLKITNIDPVHHGLLFERFLNPERKSMPDIDTDF 412

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           C +RRDE+I+YV  KYG   VAQIITF  + +KA L+DV R L +PY++ D++ K+IP  
Sbjct: 413 CIERRDEMIQYVTEKYGEANVAQIITFNRMTSKAVLKDVARVLDIPYAESDKMAKMIPVS 472

Query: 483 PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
              P  L+ +      +  F+E    +P V   L+++ ++EG  +    HAAG+VI  +P
Sbjct: 473 RGKPTPLKVMISDETPEPAFKERYDTEPHVRHWLDMAIRIEGTNKTFGVHAAGVVISSQP 532

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD- 597
           L ++VP+ ++      +TQ+ M+ +E  GL+K DFLGL+ LT L+K+ D + Q       
Sbjct: 533 LDEVVPLQKN-NDGAVITQYFMEDLESLGLLKMDFLGLRNLTTLKKTADLIKQNQGIEID 591

Query: 598 -------------------LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                                 +P D  +T+ LL      GIFQLESSGM+Q ++ ++P 
Sbjct: 592 LDQLPLDERKALQIRAKGEHKKLPPDILKTHGLLEEGDLEGIFQLESSGMKQIVKELKPS 651

Query: 639 CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            IEDI ++++LYRPGP+D   I ++  RK+G+E I   HPL++P+LKET  V++YQEQ+M
Sbjct: 652 GIEDISSILALYRPGPLDAGLIPLFIGRKHGREPIRYDHPLLEPILKETYAVLVYQEQIM 711

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
           ++AQ L+GYSL EAD+LRRAMGKK   EM KQ+E FI GA+KNG+ K IA N+FE +  F
Sbjct: 712 KMAQDLAGYSLGEADLLRRAMGKKKASEMQKQREMFIDGAAKNGVEKRIAENLFEQMVNF 771

Query: 757 ADYGF 761
           A+Y  
Sbjct: 772 AEYCL 776


>gi|293192907|ref|ZP_06609751.1| error-prone DNA polymerase [Actinomyces odontolyticus F0309]
 gi|292819963|gb|EFF78962.1| error-prone DNA polymerase [Actinomyces odontolyticus F0309]
          Length = 1094

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 292/1093 (26%), Positives = 481/1093 (44%), Gaps = 118/1093 (10%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     +  L  HS+++ L+G      ++++ A     A+AI D + ++S ++ +  A  
Sbjct: 1    MTTERRYAELHAHSAFTFLDGTDEPARMVEEAARLGLDALAILDVDGMYSTVQTTMAART 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPF--------PTVPSIVLLVSTAEGYQRLIELV 116
            AG+  + G +L +       +      P              + ++ ++  GY  L+  +
Sbjct: 61   AGLPIVYGAELTLAPDALRGIVPGSSAPGWGLAPGAEDPGMRLPIVAASPTGYAHLVGAM 120

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S   L + G+++ R  L  L E G E L++LTGG  GP+ RA     +  A + L     
Sbjct: 121  SARALSEPGQRNPRHDLVNLSEAGGE-LVVLTGGRRGPLMRALRAGGTAPARRVLDGLVD 179

Query: 177  LFG-DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             FG D++ V  Q  RG +      + +LA      LVAT+ +   S       D+L A  
Sbjct: 180  AFGCDQVLVEWQAARGDEDEVGDVLAELARASGTRLVATSGARMSSPSKQALGDILTATR 239

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
              + +++ +        +L++ +EM  +    P+AL+N  E+A  C+F L++ AP LPR 
Sbjct: 240  LGSSLNEAEAHLGAHRSFLRSPAEMARLHGAHPQALDNACEVAAACAFDLRLVAPRLPRT 299

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
               +        ++ L +    G  VR          H     + ++ EL VI R+ F+G
Sbjct: 300  QVPDG----HTPDSWLAHCTYEGASVRYG-----SRAHHPRAWETIEHELGVIERLGFAG 350

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV D + +  +N I    GRGS A S   Y L IT +D +R +LLFERFL+  R   
Sbjct: 351  YFLIVKDIVDFCARNGIL-CQGRGSAANSAVCYCLGITAVDAVRHNLLFERFLSDARSGP 409

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+D    RR+EVI+YV + +G +R AQ+    + + ++A+RDV RAL  P       
Sbjct: 410  PDIDVDIEACRREEVIQYVYDTFGRDRAAQVANVITYRPRSAIRDVARALGYPAGTATAW 469

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             +     P                           + + +Q L  L RH   H+ G+V+ 
Sbjct: 470  SQGRGEVP-------------------------PLVGDAAQALARLPRHMGIHSGGMVLT 504

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA----- 590
            D+P+S++ P+         V Q++ +    AGL+KFD L L  LT L+ + D L      
Sbjct: 505  DQPVSRICPVGWAAMPGRTVLQWDKEDCADAGLVKFDLLSLGMLTALRVAFDELRAGGAR 564

Query: 591  ------------------QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
                              + G  + L  +P +D   Y LL    T+G+FQ+ES      L
Sbjct: 565  AGEASNQLRGWAPRVVEGREGQPLGLHTLPEEDPRVYDLLCAADTVGVFQVESRAQMNTL 624

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
              ++P C  DI+  V+L RPGPI       Y  R++G+E++  +HPL++P L++T GV +
Sbjct: 625  PRLKPRCFYDIVVEVALIRPGPIQGRSVNPYLRRRSGREEVTYLHPLLEPALRQTLGVPL 684

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +QEQ+M+IA   +G S + AD LRRAM  K+  E M+  K   ++G  + GI       I
Sbjct: 685  FQEQLMRIATDAAGLSGARADQLRRAMGAKRSPERMEALKGDLMAGMEERGIDAPTRERI 744

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            FE L  FAD+GF +SH+ ++A I Y ++W+K H P  F AA +  +           QDA
Sbjct: 745  FEQLKGFADFGFPESHSFSFAHIVYASSWLKVHAPEHFYAAILASQPMGFYSPATLVQDA 804

Query: 810  RQFNIQIMPPSVNTPCVDFKVG-------------------------------DNRIYYS 838
            R+  ++++ PSVN   VD  V                                +  +   
Sbjct: 805  RRHGVRVVGPSVNDSLVDASVQRVGDDEAGESYNPGRPEALPSRGTVALDVDRELAVRIG 864

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L+ ++G+G   A  I+EA     F S  D   R     ++   +E L  AGAL+C G  R
Sbjct: 865  LSQVRGLG-AVAERIVEARRQGAFTSQADLARRAH---VSASAMEKLAMAGALECLGVGR 920

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             +   +   +       +         +   E G       + +    + + R  ++   
Sbjct: 921  REGAWAAGAL----AQPQARAGQWQPFLPGTEVGA-----RVPELPSLSEAERMRSDVAS 971

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             G     HP    +  L    +    E    + G  I +A +V  +Q+  T  G  I ++
Sbjct: 972  TGLTPGRHPFSYVRGSLPA-SVLRAGELGQHLAGRIIDIAGVVTHRQRPHT--GGGITFL 1028

Query: 1019 TFSEPAKEYEANF 1031
            +  +       + 
Sbjct: 1029 SLEDETGFVNVSV 1041


>gi|154508747|ref|ZP_02044389.1| hypothetical protein ACTODO_01255 [Actinomyces odontolyticus ATCC
            17982]
 gi|153798381|gb|EDN80801.1| hypothetical protein ACTODO_01255 [Actinomyces odontolyticus ATCC
            17982]
          Length = 1094

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 291/1093 (26%), Positives = 481/1093 (44%), Gaps = 118/1093 (10%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +     +  L  HS+++ L+G      ++++ A     A+AI D + ++S ++ +  A  
Sbjct: 1    MTTERRYAELHAHSAFTFLDGTDEPARMVEEAARLGLDALAILDVDGMYSTVQTTMAART 60

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPF--------PTVPSIVLLVSTAEGYQRLIELV 116
            AG+  + G +L +       +      P              + ++ ++  GY  L+  +
Sbjct: 61   AGLPIVYGAELTLAPDALRGIVPGSSAPGWGLAPGAEDPGMRLPIVAASPTGYAHLVGAM 120

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S   L + G+++ R  L  L E G E L++LTGG  GP+ RA     +  A + L     
Sbjct: 121  SARALSEPGQRNPRHDLVNLSEAGGE-LVVLTGGRRGPLMRALRAGGTAPARRVLDGLVD 179

Query: 177  LFG-DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             FG D++ V  Q  RG +      + +LA      LVAT+ +   S       D+L A  
Sbjct: 180  AFGCDQVLVEWQAARGDEDEVGDVLAELARASGTRLVATSGARMSSPSKQALGDILTATR 239

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
              + +++ +        +L++ +EM  +    P+AL+N  E+A  C+F L++ AP LPR 
Sbjct: 240  LGSSLNEAEAHLGAHRSFLRSPAEMARLHGAHPQALDNACEVAAACAFDLRLVAPRLPRT 299

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
               +        ++ L +    G  VR          H     + ++ EL VI R+ F+G
Sbjct: 300  QVPDG----HTPDSWLAHCTYEGASVRYG-----SRAHHPRAWETIEHELGVIERLGFAG 350

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV D + +  +N I    GRGS A S   Y L IT +D +R +LLFERFL+  R   
Sbjct: 351  YFLIVKDIVDFCARNGIL-CQGRGSAANSAVCYCLGITAVDAVRHNLLFERFLSDARSGP 409

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+D    RR+EVI+YV + +G +R AQ+    + + ++A+RDV RAL  P       
Sbjct: 410  PDIDVDIEACRREEVIQYVYDTFGRDRAAQVANVITYRPRSAIRDVARALGYPAGTATAW 469

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             +     P                           + + +Q L  L RH   H+ G+V+ 
Sbjct: 470  SQGRGEVP-------------------------PLVGDAAQALARLPRHMGIHSGGMVLT 504

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA----- 590
            D+P+S++ P+         V Q++ +    AGL+KFD L L  LT L+ + D L      
Sbjct: 505  DQPVSRICPVGWAAMPGRTVLQWDKEDCADAGLVKFDLLSLGMLTALRVAFDELRAGGAR 564

Query: 591  ------------------QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
                              + G  + L  +P +D   Y LL    T+G+FQ+ES      L
Sbjct: 565  AGEASNQLRGWAPRVVEGREGQPLGLHTLPEEDPRVYDLLCAADTVGVFQVESRAQMNTL 624

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
              ++P C  DI+  V+L RPGPI       Y  R++G+EK+  +H L++P L++T GV +
Sbjct: 625  PRLKPRCFYDIVVEVALIRPGPIQGRSVNPYLRRRSGREKVTYLHQLLEPALRQTLGVPL 684

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +QEQ+M+IA+  +G S + AD LRRAM  K+  E M+  K   ++G  + GI       I
Sbjct: 685  FQEQLMRIARDAAGLSGARADQLRRAMGAKRSPERMEALKGDLMAGMEERGIDAPTRERI 744

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            FE L  FAD+GF +SH+ ++A I Y ++W+K H P  F AA +  +           QDA
Sbjct: 745  FEQLKGFADFGFPESHSFSFAHIVYASSWLKVHAPEHFYAAILASQPMGFYSPATLVQDA 804

Query: 810  RQFNIQIMPPSVNTPCVDFKVG-------------------------------DNRIYYS 838
            R+  ++++ PSVN   VD  V                                +  +   
Sbjct: 805  RRHGVRVVGPSVNDSLVDASVQRVGDDEAGESYNPGRPEALPSRGTVALDVDRELAVRIG 864

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            L+ ++G+G   A  I+EA     F S  D   R     ++   +E L  AGAL+C G  R
Sbjct: 865  LSQVRGLG-AVAERIVEARRQGAFTSQADLARRAH---VSASAMEKLAMAGALECLGVGR 920

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             +   +   +       +         +   E G       + +    + + R  ++   
Sbjct: 921  REGAWAAGAL----AQPQARAGQWQPFLPGTEVGA-----RVPELPSLSEAERMRSDVAS 971

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
             G     HP    +  L    +    E    + G  + +A +V  +Q+  T  G  I ++
Sbjct: 972  TGLTPGRHPFSYVRGSLPA-SVLRAGELGQHLTGRIVDIAGVVTHRQRPHT--GGGITFL 1028

Query: 1019 TFSEPAKEYEANF 1031
            +  +       + 
Sbjct: 1029 SLEDETGLVNVSV 1041


>gi|297161682|gb|ADI11394.1| DNA polymerase III, alpha subunit [Streptomyces bingchenggensis
            BCW-1]
          Length = 1240

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 269/1143 (23%), Positives = 445/1143 (38%), Gaps = 153/1143 (13%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P F HL   S +S+  GA+    +    A     AIA+TD ++L  A+ F++   AAG++
Sbjct: 2    PGFTHLHTASGFSMRYGAVHPERLAQCAAERGMDAIALTDRDSLAGAVRFAKAGAAAGVR 61

Query: 69   PIIGCQLDI--------DMQDNLKMTNQGKTPFPTVPSIVLL----------VSTAEGYQ 110
            P+ G  L +                   G     + P  V L                  
Sbjct: 62   PLFGVDLAVQARAPEPGRTVRRRTPVRGGAFIDESAPRAVFLARGGAAGWAA-------- 113

Query: 111  RLIELVSRMY-----------------------LLDQGKQSVRICLSWLQEIGTEG---- 143
             L  LVS  +                           G     +  + L++  + G    
Sbjct: 114  -LCGLVSAAHAGEAPAGAHSGPDAGTHAGTRSGARAGGAGQPLLHWADLEDGASGGGATA 172

Query: 144  ---LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR----GYDRYR 196
               L +L G     + RA        AE  +  +++LFGD L +    H     G    R
Sbjct: 173  LAPLTVLLG-PDSDVGRALAAGRPDRAEHLIAPWRELFGDALRLEAVWHGRTGTGPGSLR 231

Query: 197  E-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ--------KDRPR 247
              ++ V  A    +  V +N   +         DVL A      +           +R  
Sbjct: 232  LAARTVGFAADQGVRAVLSNAVRYADPGQGPVADVLDAARRLVPIDPRDPAALDSGERWL 291

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI---- 303
              P    +   ++        +A    +E   R +    V              +     
Sbjct: 292  KGPQDMARIAEKIAEAAGRRRDAAHRLLEETERTAAACLVDPEDHIGLGSIHFPEPHLVG 351

Query: 304  --QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               +  E  LR+          A   +       +   RL+ EL  I R+ F+ YFL VA
Sbjct: 352  AGHRSAERVLRS-------RCAAAMVLRGYDRDHERWGRLEDELRTIERLGFASYFLTVA 404

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
              +   +   I V   RGSGAGS   + L I   DP+   LL ERFL+  R ++PD DID
Sbjct: 405  QVVDDTRALGIRVA-ARGSGAGSFVNHLLGIAHADPVANGLLMERFLSVRRAALPDIDID 463

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
                RR EV R + +++G ERVA +    + + + A+RDVG AL M  ++VDRL K  P+
Sbjct: 464  VESARRLEVYRTIFDRFGAERVATVSMPETYRVRHAVRDVGAALGMDPAEVDRLAKSFPH 523

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
              A        A+               RL E+ + L+GL R  + H  G+++ D  L  
Sbjct: 524  IRARDARAAL-AELPELSAVAAEQKRYGRLWELVEALDGLPRGIAMHPCGVLLSDAGLRA 582

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----D 597
              P+        P++QF+   +E  GL+K D LG++  + +  +   +A+   +     D
Sbjct: 583  RTPVVPTSGEGFPMSQFDKDDVEDLGLLKLDVLGVRMQSSMAHAAAEVARVTGRPLDLDD 642

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
              ++  +D  TY L+ +  TLG FQ+ES G R  L  +QP    D++  +SL+RPGP+  
Sbjct: 643  PEVVRPNDPATYDLIRSTETLGCFQIESPGQRDLLGRLQPTSFHDLVVDISLFRPGPVAA 702

Query: 658  IV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +   +   ++G++     HP ++  L+ET GV+++ EQ+++I  +++G     AD  RR
Sbjct: 703  DMVRPFIEARHGRKPPRYPHPDLEDALRETYGVVVFHEQIIKILSIMAGCERDLADEARR 762

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            A+    +    + +  F + A+  G    + +  +E++  F  YGF K+HA A+AV +YQ
Sbjct: 763  ALSDPER--QGRVRAWFHAEAANRGYRPEVRLRTWEIVEAFGSYGFCKAHAVAFAVPTYQ 820

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---- 831
            +AW+K H+P  F A  +T +     K +    DAR+  + I+P  VN    D+++     
Sbjct: 821  SAWLKAHHPAAFYAGVLTHDPGMYPK-RLLLADARRRGVPILPLDVNRSGADYRIELVSG 879

Query: 832  -----------------------------------------DNRIYYSLAAIKGVGTTTA 850
                                                        +  +L+ + G+     
Sbjct: 880  DGVSAAGAAGTGPMGVSSTDAGSTAAGSTAADSVGAGSTGAGFGVRLALSDVHGISEAET 939

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I    A +P+ SL+D   R       R V E L   GALD FG SR  LL  +  + +
Sbjct: 940  GRIA---AGQPYSSLQDLWRRAHP---GRPVAERLAQVGALDAFGTSRRDLLLQIAELHR 993

Query: 911  YAQWVEKNRTN-KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
              +   ++ T      +        +           N   R   E  +LG   S H + 
Sbjct: 994  QQRGARRDGTGEGQLPL------AETAPPAPAGLPDLNPEERLGAELGILGMDVSRHLMG 1047

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
             ++  L ++G    +       G  + +A    + Q    R G R+ + T  +     + 
Sbjct: 1048 DHRAFLEELGAVPAKRLRDARHGETVLVAGAKAATQTPPIRSGRRVIFTTLDDGTGLVDC 1107

Query: 1030 NFF 1032
             FF
Sbjct: 1108 AFF 1110


>gi|218667676|ref|YP_002426285.1| DNA polymerase III, alpha subunit, putative [Acidithiobacillus
            ferrooxidans ATCC 23270]
 gi|218519889|gb|ACK80475.1| DNA polymerase III, alpha subunit, putative [Acidithiobacillus
            ferrooxidans ATCC 23270]
          Length = 1015

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 277/1033 (26%), Positives = 457/1033 (44%), Gaps = 81/1033 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+ S L GA ++ ++LD+  A    A+AIT+  +L SA      AC  G  
Sbjct: 2    PEYAELHCLSALSFLRGASAVEDLLDRAQALGYRALAITEECSLGSAARAHSHACNIGFP 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY-LLDQGKQ 127
             I+G ++ +                   P IVLLV   +GY  L   ++R      +G  
Sbjct: 62   LILGSEIALTDG----------------PRIVLLVQEHDGYVALSRFITRARGRAGKGHY 105

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV-- 184
              R+  + L E        L G  +  +  +       VA    +  +   G + +++  
Sbjct: 106  QARM--ADLPE--------LVGCLAIILPDS-QSLRFDVAGAIAV--RDCLGAENVWLGA 152

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-K 243
             L R  G D  +  +V++      +P +A  +            DVL A+     ++   
Sbjct: 153  ELLR-GGDDAAQLREVLEQGRALNIPCLACGDVHMDRRSRRFLQDVLTAIRLRRPLADLG 211

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                   + +L+ RS +  I+   PE L  T+ +A RC F L       P          
Sbjct: 212  WALARNGERHLRPRSVLAEIYP--PELLVETLRVAERCQFSLDSLVYRYPDGACP----A 265

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             ++ ++ L   A  GL+ R  QG             +L+ EL ++  + ++GYFL V D 
Sbjct: 266  DQQRDDYLAELARQGLQRRYPQGVAT------VVATQLEAELALVRELDYAGYFLTVHDI 319

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++AK   I    GRGS A SV  YAL IT++DP R  LLF RF++ DR   PD D+DF 
Sbjct: 320  VRFAKGRGIL-CQGRGSAANSVICYALGITEVDPSRMQLLFARFISRDRREPPDIDVDFE 378

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EVI+YV   YG +  A   T    + ++A+RD  RAL     ++ RL + +    
Sbjct: 379  HERREEVIQYVFQHYGRDHAALTATIIHYRPRSAMRDAARALGFAPVEIQRLTQGLAWWD 438

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  + + +    +      P++ RL+ +   L G  RH S H  G+V+   PL+ LV
Sbjct: 439  GRQIRPERLQE----QGFDPTSPTIQRLVTVVNALVGFPRHLSQHVGGMVLSATPLNALV 494

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+     ++  V Q++   ++  G++K D L L  L++L+++L       + + L+ IP 
Sbjct: 495  PIEPAAMAERAVIQWDKDDLDVLGILKVDILALGMLSVLRRAL-----DDLGMTLADIPA 549

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662
            +D  TY +L    +LG+FQ+ES      L  ++P C  D++  V++ RPGPI   +V+  
Sbjct: 550  EDPATYAMLQRGESLGVFQVESRAQMSMLPRLKPRCFYDLVIEVAIIRPGPIQGDMVHPY 609

Query: 663  -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK- 720
              R+ G E +    P +  +L+ T GV I+QEQVMQIA   +G+S  EAD LRRAM    
Sbjct: 610  LRRRQGLEPVRYPGPEVKKVLERTLGVPIFQEQVMQIAIDAAGFSGDEADGLRRAMAAWR 669

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             K  +    +R I G    G S+  A  + + +  FA+YGF +SHAA++A++ Y +AW+K
Sbjct: 670  RKGHLGPYSDRLIRGLRLRGYSEAFAQRLCQQIQGFAEYGFPESHAASFALLVYASAWIK 729

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             H+P  F AA +  +        +  Q+AR+  ++++   +     D KV D  +   L 
Sbjct: 730  CHHPAIFAAALLNSQPMGFYAPAQIVQEARRCGVEVLSVDICHSDWDCKVQDGALRLGLC 789

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             IKG+    A  ++   A     +L     R     L+   L  L +AGAL      R Q
Sbjct: 790  LIKGMSPKEAERLLHWRAQGG--ALHSEALR-HGLGLSAAALHQLAYAGALSSLHGDRHQ 846

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             L ++                    +          +        E S+     + + LG
Sbjct: 847  ALWAV---------------QGSLPLPTALPMPVVPE-QAPALPAETSAAACIADYQQLG 890

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
                 HPL   +  + + G +   E          RLA +V  +Q+  T  G+   ++T 
Sbjct: 891  LSLGPHPLHFLRERIAQSGYRRIAEVRLQHHDRPDRLAGLVTHRQRPGTAHGT--VFLTL 948

Query: 1021 SEPAKEYEANFFP 1033
             + +       +P
Sbjct: 949  EDESGMINVIVWP 961


>gi|307069536|ref|YP_003878013.1| putative DNA polymerase III subunit alpha [Candidatus Zinderia
            insecticola CARI]
 gi|306482796|gb|ADM89667.1| putative DNA polymerase III, alpha subunit [Candidatus Zinderia
            insecticola CARI]
          Length = 1131

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 340/1011 (33%), Positives = 567/1011 (56%), Gaps = 48/1011 (4%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL++H+ YS+++  + +N I+     D+Q ++AITD +N+F A++F +++   GI+PI
Sbjct: 4    FTHLRLHTEYSIVDSLVKINEIIKLAKKDKQESLAITDLSNIFGAIKFYKESIKNGIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IGC L I+ + N K              +++L     GY +L +L+S+ ++ +   +  +
Sbjct: 64   IGCDLFIENKINKKKP----------FRLLILSKNYNGYLQLCKLISKSWIYNLKDEKPQ 113

Query: 131  ICLSWLQEIGTE-GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            I  SWL++I     LI L+G  S  +         + AE     +KK+F +  ++ +Q  
Sbjct: 114  IKKSWLKKINKNSNLIALSGYKSSDLLFYINKKKFKKAENCAKKWKKIFNNLYFIEIQNI 173

Query: 190  RG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                +      ++++     +P+VAT+   F  ++++ AH++   +     +    +   
Sbjct: 174  NIKNNEIFNYNLIKIGNKLNIPIVATHPIQFCYKKEFIAHEIRYNIYKKKKL-NNSKYHF 232

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
              +   K + E+  +F +   A++N+ +I++ C+ I+      LP++ +      +  + 
Sbjct: 233  NKEQNFKTQIEINKLFVNNLIAVKNSYKISKMCNLIIPKGVLKLPKYNK----KKKINDN 288

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L+ K   GL  RL      K      Y++RL FEL +I++  FS YFL+V DFI+WAK
Sbjct: 289  ELLKIKTKIGLNKRLKNKKNLK-----IYKKRLKFELKIISKTNFSNYFLMVNDFIKWAK 343

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            K NI +GPGRGSGA S+ AY L ITDIDP+++ L+FERFLNP+R+S PDFDIDFCQ +RD
Sbjct: 344  KKNINIGPGRGSGASSLIAYCLFITDIDPIKYKLIFERFLNPERISFPDFDIDFCQKKRD 403

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             +I+Y++ KYG   V+QIITFG + AK+++RDVGR L + Y+  + + KLI N   + ++
Sbjct: 404  IIIKYIKKKYGVNNVSQIITFGKIAAKSSIRDVGRVLGLSYNFCNNIVKLISNKKYYNLN 463

Query: 489  LQAI-ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L+ I  ++   ++  L +  + +L+  S ++EG+ ++   HA GI+I    L++   +Y+
Sbjct: 464  LKEIVENNYFLKKKILNNKIIKKLIFFSIQIEGIIKNIGIHAGGILISKNNLNKYCALYK 523

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP---FD 604
              + ++   Q + + +E  GLIKFDFLGL TLT++ ++   + +   K+ L       F 
Sbjct: 524  HSKDNIITIQNDKEDLEFLGLIKFDFLGLATLTIIDETNKNIKKINPKIKLISWNKISFK 583

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +TY LL    T+G+FQLES G++  L+    +C+EDI A++SLYRPGPI  I  +  R
Sbjct: 584  DKKTYKLLNNANTIGVFQLESIGIQNILKKANINCLEDITAIISLYRPGPIKLIKKFYKR 643

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
            KNG  K    +  I  +L ET G++IYQEQVM++A++++ YS+  AD+LRR + KK  +E
Sbjct: 644  KNG-YKFKFFNEKIKNVLSETYGIMIYQEQVMEVAKIIANYSMGSADLLRRIISKKNLKE 702

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M K ++ FI GA KN I+   A  IF L+ KFA YGFNKSHA AYAVISY TA++K+++P
Sbjct: 703  MHKNRKLFIKGALKNKINLKTANKIFNLMEKFAGYGFNKSHATAYAVISYYTAYLKSNFP 762

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQF-NIQIMPPSVNTPCVDFK-VGDNR---IYYSL 839
             EF++A+++L ++N+ KIK   +DA     I I+PP++N     F  +  N    I Y L
Sbjct: 763  NEFISANLSLSINNINKIKFLIKDAINNFKINILPPNINYSKYKFIPIIKNNIFYIRYGL 822

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRV--DSKKLNRRVLESLVFAGALDCFGYS 897
            +AIKG+G    + I+     K F +L DF  R+  +   +N+RVL SL+++G+LD F  +
Sbjct: 823  SAIKGLGKIAIKLILNKRKKKIFKNLYDFIFRIIKNKNLINKRVLNSLIYSGSLDIFNKN 882

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R  L   +  + K              +          +K+ + K+  +  + +   E++
Sbjct: 883  RNILKIKIKFLLK-----------NLNDFNKKLIIKNKNKLNILKWKKKILNKKKILEKQ 931

Query: 958  --VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
               LGFY   +P    K  + ++               NI    ++ + ++
Sbjct: 932  KFFLGFYLFKNPFFYIKKDIEQLNKFKIYNI-NKFINKNIITYGIINNIKK 981


>gi|198283654|ref|YP_002219975.1| DNA polymerase III subunit alpha [Acidithiobacillus ferrooxidans ATCC
            53993]
 gi|198248175|gb|ACH83768.1| DNA polymerase III, alpha subunit [Acidithiobacillus ferrooxidans
            ATCC 53993]
          Length = 1020

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 277/1033 (26%), Positives = 457/1033 (44%), Gaps = 81/1033 (7%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S+ S L GA ++ ++LD+  A    A+AIT+  +L SA      AC  G  
Sbjct: 7    PEYAELHCLSALSFLRGASAVEDLLDRAQALGYRALAITEECSLGSAARAHSHACNIGFP 66

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY-LLDQGKQ 127
             I+G ++ +                   P IVLLV   +GY  L   ++R      +G  
Sbjct: 67   LILGSEIALTDG----------------PRIVLLVQEHDGYVALSRFITRARGRAGKGHY 110

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV-- 184
              R+  + L E        L G  +  +  +       VA    +  +   G + +++  
Sbjct: 111  QARM--ADLPE--------LVGCLAIILPDS-QSLRFDVAGAIAV--RDCLGAENVWLGA 157

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-K 243
             L R  G D  +  +V++      +P +A  +            DVL A+     ++   
Sbjct: 158  ELLR-GGDDAAQLREVLEQGRALNIPCLACGDVHMDRRSRRFLQDVLTAIRLRRPLADLG 216

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                   + +L+ RS +  I+   PE L  T+ +A RC F L       P          
Sbjct: 217  WALARNGERHLRPRSVLAEIYP--PELLVETLRVAERCQFSLDSLVYRYPDGACP----A 270

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             ++ ++ L   A  GL+ R  QG             +L+ EL ++  + ++GYFL V D 
Sbjct: 271  DQQRDDYLAELARQGLQRRYPQGVAT------VVATQLEAELALVRELDYAGYFLTVHDI 324

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++AK   I    GRGS A SV  YAL IT++DP R  LLF RF++ DR   PD D+DF 
Sbjct: 325  VRFAKGRGIL-CQGRGSAANSVICYALGITEVDPSRMQLLFARFISRDRREPPDIDVDFE 383

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EVI+YV   YG +  A   T    + ++A+RD  RAL     ++ RL + +    
Sbjct: 384  HERREEVIQYVFQHYGRDHAALTATIIHYRPRSAMRDAARALGFAPVEIQRLTQGLAWWD 443

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +  + + +    +      P++ RL+ +   L G  RH S H  G+V+   PL+ LV
Sbjct: 444  GRQIRPERLQE----QGFDPTSPTIQRLVTVVNALVGFPRHLSQHVGGMVLSATPLNALV 499

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
            P+     ++  V Q++   ++  G++K D L L  L++L+++L       + + L+ IP 
Sbjct: 500  PIEPAAMAERAVIQWDKDDLDVLGILKVDILALGMLSVLRRAL-----DDLGMTLADIPA 554

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662
            +D  TY +L    +LG+FQ+ES      L  ++P C  D++  V++ RPGPI   +V+  
Sbjct: 555  EDPATYAMLQRGESLGVFQVESRAQMSMLPRLKPRCFYDLVIEVAIIRPGPIQGDMVHPY 614

Query: 663  -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK- 720
              R+ G E +    P +  +L+ T GV I+QEQVMQIA   +G+S  EAD LRRAM    
Sbjct: 615  LRRRQGLEPVRYPGPEVKKVLERTLGVPIFQEQVMQIAIDAAGFSGDEADGLRRAMAAWR 674

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             K  +    +R I G    G S+  A  + + +  FA+YGF +SHAA++A++ Y +AW+K
Sbjct: 675  RKGHLGPYSDRLIRGLRLRGYSEAFAQRLCQQIQGFAEYGFPESHAASFALLVYASAWIK 734

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             H+P  F AA +  +        +  Q+AR+  ++++   +     D KV D  +   L 
Sbjct: 735  CHHPAIFAAALLNSQPMGFYAPAQIVQEARRCGVEVLSVDICHSDWDCKVQDGALRLGLC 794

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             IKG+    A  ++   A     +L     R     L+   L  L +AGAL      R Q
Sbjct: 795  LIKGMSPKEAERLLHWRAQGG--ALHSEALR-HGLGLSAAALHQLAYAGALSSLHGDRHQ 851

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             L ++                    +          +        E S+     + + LG
Sbjct: 852  ALWAV---------------QGSLPLPTALPMPVVPE-QAPALPAETSAAACIADYQQLG 895

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
                 HPL   +  + + G +   E          RLA +V  +Q+  T  G+   ++T 
Sbjct: 896  LSLGPHPLHFLRERIAQSGYRRIAEVRLQHHDRPDRLAGLVTHRQRPGTAHGT--VFLTL 953

Query: 1021 SEPAKEYEANFFP 1033
             + +       +P
Sbjct: 954  EDESGMINVIVWP 966


>gi|16332330|ref|NP_443058.1| DNA polymerase III subunit alpha [Synechocystis sp. PCC 6803]
 gi|1653960|dbj|BAA18870.1| DNA polymerase III alpha subunit [Synechocystis sp. PCC 6803]
          Length = 897

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 281/786 (35%), Positives = 440/786 (55%), Gaps = 43/786 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+      PAIA+TD   ++ A+E  +      I+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPALIDRAIELGMPAIALTDHGVMYGAVELLKVCRGKPIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD----QG 125
           IIG ++ +   D        +         V+L    +GY+ L++L +   L        
Sbjct: 62  IIGNEMYVINGDIEINKRHRR------FHQVVLAKNNQGYRNLVKLTTISNLKGIQGSGI 115

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L++   EGLI+ +    G + +A        A +    +K LFGD  Y+ 
Sbjct: 116 FARPCINKELLEQY-KEGLIVTSACLGGEVPQAILKGDLDHARQVAKWYKNLFGDDYYLE 174

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR     +V++A   ++ +VATN+S F+S  D EAHD L+ +    +++++ 
Sbjct: 175 IQDHGSVEDRLVNINLVKIAQELDIKIVATNDSHFISCNDVEAHDALLCIQTGKLITEEK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           R R +   YLK+  EM  +F D    + +E  +      +  ++ ++ +    I      
Sbjct: 235 RLRYSGTEYLKSAEEMHLLFRDHLPDDIIETAIANTLEVADKVEAYSILGEPRIPHYPIP 294

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                E  + + A  GL  RL      +      Y++RL++EL ++ +M F  YFL+V D
Sbjct: 295 PNHTPETYVEDIAWDGLLERLKC--RERADITPVYKERLEYELRMLEKMGFCTYFLVVWD 352

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           +I++A+ + IPVGPGRGS AGS+ AY + IT+IDP+   L+FERFLNP+R SMPD D DF
Sbjct: 353 YIKYARDHGIPVGPGRGSAAGSLVAYCMKITNIDPVHHGLIFERFLNPERKSMPDVDTDF 412

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           C DRRDE+I YV  KYG ++VAQIITF  + +KA L+DV R L +PY++ D++ K+IP  
Sbjct: 413 CIDRRDEMIEYVTQKYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYAESDKMAKMIPVS 472

Query: 483 PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
              P  L+ +      + +F+     +P V + ++++ ++EG  +    HAAG+VI   P
Sbjct: 473 RGKPAKLKVMISDQTPEPQFKARYDNEPWVKKWIDMAIRIEGTNKTFGVHAAGVVISSEP 532

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
           L Q+VP+ ++      +TQ+ M+ +E  GL+K DFLGLK LT LQ++++ +A+       
Sbjct: 533 LDQIVPLQKN-NDGAVITQYYMEDVEAMGLLKMDFLGLKNLTTLQRAVELVAETKGIELD 591

Query: 599 SLIPFDDHE--------------------TYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                                        T+ LL      GIFQLES GM+Q +  ++P 
Sbjct: 592 LDDLPLQERKALQIRARTGSKKLPDDVKKTHKLLEAGDLEGIFQLESQGMKQIVRDLKPS 651

Query: 639 CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            IEDI ++++LYRPGP+D   I ++ NRK+G+E+I   H L++P+L ET GV++YQEQ+M
Sbjct: 652 GIEDISSILALYRPGPLDAGLIPIFINRKHGREEISYQHKLLEPILNETYGVLVYQEQIM 711

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
           ++AQ L+ YSL EAD+LRRAMGKK  EEM K + +F+ G++K+G+   IA N+F+ + KF
Sbjct: 712 KMAQDLADYSLGEADLLRRAMGKKKAEEMQKHRAKFVDGSTKHGVPSRIAENLFDQMVKF 771

Query: 757 ADYGFN 762
           A+Y  +
Sbjct: 772 AEYCLS 777


>gi|145628379|ref|ZP_01784180.1| DNA polymerase III subunit alpha [Haemophilus influenzae 22.1-21]
 gi|144980154|gb|EDJ89813.1| DNA polymerase III subunit alpha [Haemophilus influenzae 22.1-21]
          Length = 847

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 314/716 (43%), Positives = 436/716 (60%), Gaps = 16/716 (2%)

Query: 332  YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
                 Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL 
Sbjct: 4    EKRPKYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALK 63

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
            ITD+DPL F LLFERFLNP+R+SMPDFD+DFC D RD VI +V   YG   V+QIITFG+
Sbjct: 64   ITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAETYGRGAVSQIITFGT 123

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            + AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + + + A  +D  V  L
Sbjct: 124  MAAKAVIRDVGRVLGHPYGFVDRISKLIPLDPGMTL-AKAFEAEPQLQTAYDSDEEVQAL 182

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
            +++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT F+   +E AGL+KF
Sbjct: 183  IDMARKLEGVTRNAGKHAGGVVISPTLITDFSPLYCDNEGLHPVTHFDKNDVEYAGLVKF 242

Query: 572  DFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            DFLGL+TLT+++ +LD +  R       +VD++ IP DD E++ LL    T  +FQLES 
Sbjct: 243  DFLGLRTLTIIKWALDMINVRMVREGKPRVDIAAIPLDDPESFELLKRAETTAVFQLESR 302

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YNNRKNGKEKIVSIHPLID 679
            GM+  ++ +QPDC EDIIALV+L+RPGP+ + +V       +   +         H  + 
Sbjct: 303  GMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREEVSYPDAEYQHESLK 362

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
            P+L+ T G+I+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM KQ+  F  GA KN
Sbjct: 363  PILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEEMAKQRSVFKEGAVKN 422

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G+   +++ IF+L+ KFA YGFNKSH+AAYA++SYQT W+KTH+P EF+AA MT EMDN 
Sbjct: 423  GVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPAEFMAAVMTSEMDNT 482

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASA 858
            +KI     +  +  +++ PP +N     F V +   I Y + AIKGVG      ++ A  
Sbjct: 483  DKIVGLYDECLRMGLKVTPPDINVGKHHFSVNEQGEIVYGIGAIKGVGEGPIEALVTARN 542

Query: 859  DKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
            +   F  L D C+RVD KK+NRR  ESL+ +GA D  G  R  L ++L++  K +    K
Sbjct: 543  EGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLGPHRAALSKNLEDALKASDQHAK 602

Query: 918  NRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
            +      ++F     T  D +               + E+  LG Y S HP+  Y   L 
Sbjct: 603  DEAMGQTDMFGVLTETHEDVENAYANTPPYTEKQILDGERETLGLYLSSHPVSRYLKELS 662

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   ++     RG    +A ++VS +   T+KG+R+G  T  + +   +   F
Sbjct: 663  HYTSTRLKDLAPNRRGQISTVAGLLVSSRIAITKKGNRLGIATLDDRSGRLDLTLF 718


>gi|149919649|ref|ZP_01908128.1| DNA polymerase III, alpha subunit [Plesiocystis pacifica SIR-1]
 gi|149819592|gb|EDM79020.1| DNA polymerase III, alpha subunit [Plesiocystis pacifica SIR-1]
          Length = 1125

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 272/1082 (25%), Positives = 473/1082 (43%), Gaps = 86/1082 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V L V S++S LEGA   + +++  A    PA+ + D + +   +     A    ++ +
Sbjct: 4    YVPLTVKSNFSFLEGASHPSELVETAAELGLPALGLCDRDGVHGVVRAHMAAKEVNLKLL 63

Query: 71   IGCQLDI-----------------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
            +G +L +                                 +          + +L    +
Sbjct: 64   LGAELSLGSLPEQLMLTSPTPRRAQQNRRSSRGRGRGRGRKPPPELGEGSRVTVLAEDRD 123

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI---MLTGGSSGPIDRAFFFNSS 164
            G+ RL  L+S  +     K   R+ L  L      G+      +   S          + 
Sbjct: 124  GWARLCRLLSIAHGR-GPKGQARLTLDELAGEAGTGVYGEAANSPARSMHARPGAGLIAL 182

Query: 165  QVAEKRLLTFKKLFG-DRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSE 222
                + L    + +G DR+Y  + RHR  +    E ++   A    +  V + + L+   
Sbjct: 183  VRDPQHLPLLAEAWGRDRVYALVTRHRRAEELALEDKLRAAAQHVGVACVGSTDVLYHRS 242

Query: 223  EDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
                  DVL  V    T+       +   +H L +   M   F+D PE L+ ++EIA RC
Sbjct: 243  ARRPLQDVLACVRAGATLREAGQAIQGNAEHALDSIVAMRERFADCPELLDRSLEIAERC 302

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            SF L     + P           + E + LR    AG   R A           +   +L
Sbjct: 303  SFSLDQLRYVYPGETLPAG----RSEGDHLRELTFAGARTRYAD------RIPPEVTAQL 352

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + EL++IA + + GYFL + + +++ ++  I    GRGS A S   Y L IT IDP+R  
Sbjct: 353  ERELSLIAELDYGGYFLTMKEIVEFCRREGIL-CQGRGSAANSAVCYCLGITAIDPVRMD 411

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERFL+ +R   PD D+D   +RR+EVI++V  ++G    A +      +A++A+R+V
Sbjct: 412  LLFERFLSRERAEPPDIDLDIEHERREEVIQWVYARWGRRHAAMVANVIRYRARSAVREV 471

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
            G+ L +P + +DR+ KL+ +          +    R        P  + L+ +S +L   
Sbjct: 472  GKVLGLPQTCLDRVSKLLGHHYHGGSVDPELL---RTVGLDPEHPIHEHLIRLSTELLDF 528

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             RH S H  G ++G  P+  +VP+         V Q++   +E  GL K D LGL  L+ 
Sbjct: 529  PRHLSIHPGGFLLGSDPVDSMVPIEPASMEGRTVIQWDKYDVEDLGLFKVDLLGLGALSH 588

Query: 582  LQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            +++ LD + A  GV +D++ IP++D  T+ LL    T+G+FQ+ES      L  ++P C 
Sbjct: 589  VRRCLDLIGAHEGVDLDMATIPYEDTPTFDLLCRGDTVGVFQVESRAQMAMLPRLRPRCF 648

Query: 641  EDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
             D++  V++ RPGPI   +V+    R+ G E I   HP ++ +L +T GV I+QEQVM++
Sbjct: 649  YDLVIEVAIVRPGPIQGDMVHPYLRRRQGHEPIEFPHPKLERVLAKTCGVPIFQEQVMKL 708

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            A  ++ Y+  EAD LRR MG       ++  ++R +S    NGI +  A  +F+ +  F 
Sbjct: 709  AIAVADYTPGEADQLRRDMGAWRSSGRIEAHEQRLVSRMMANGIEREFAERVFQQIKGFG 768

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            +YGF +SHAA++A+I++ TAW++ H+   F  A +  +      +    +DAR+  +++ 
Sbjct: 769  EYGFPESHAASFALIAWVTAWLRAHHMPAFSCALLNSQPMGFYSVATLVEDARRHGVEVR 828

Query: 818  PPSVNTPCVDFKVGD--------------NRIYYSLAAIKGVGTTTARHIMEASA----- 858
            P  V +   D  +                  +   L  IKG+    A  ++ A       
Sbjct: 829  PIDVRSSDWDCLLEPRKLEGAGGPDPCSRWAMRMGLRWIKGLAHKDAAAVVAARRARLAK 888

Query: 859  ------DKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM-QLLQSLDNIQK 910
                   +P +  L+DF       +L ++ L  L  AGAL+ F   R  + L    + ++
Sbjct: 889  NSGKNPGRPAWRDLDDFVR---DTRLPKKSLTLLAEAGALEAF--DRAPRPLADRTSTRR 943

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
             A W  +    + ++  +  +           F   +       + R       GHPL+ 
Sbjct: 944  DASWAVRGALVRADDRLSLGEAAAHQ----PAFPRLDRHEAVAWDYRTSFHSTRGHPLEQ 999

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +  LR+  +   E+  A   G  +R   +V+ +Q+  T  G  + + T  +        
Sbjct: 1000 LRARLRRARVPHAEQLAALPTGRKVRYVGLVICRQRPGTASG--VTFCTLEDETGFVNLV 1057

Query: 1031 FF 1032
             +
Sbjct: 1058 IW 1059


>gi|257867601|ref|ZP_05647254.1| DNA polymerase III alpha subunit [Enterococcus casseliflavus EC30]
 gi|257873931|ref|ZP_05653584.1| DNA polymerase III alpha subunit [Enterococcus casseliflavus EC10]
 gi|257801657|gb|EEV30587.1| DNA polymerase III alpha subunit [Enterococcus casseliflavus EC30]
 gi|257808095|gb|EEV36917.1| DNA polymerase III alpha subunit [Enterococcus casseliflavus EC10]
          Length = 1103

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 304/1034 (29%), Positives = 519/1034 (50%), Gaps = 66/1034 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S+YSLL+  + + + +++        + +TD N L+ A+EF Q+  A GI+PI
Sbjct: 2    YSQLTTLSAYSLLQSTIKIPHYIEQAKKMGYQTLGLTDHNVLYGAVEFYQQCLAQGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G   D    +                 + +     +GYQ L+ L S   + +Q   +  
Sbjct: 62   FGALFDCTFGEGSM-----------SFPLYVFAKNLKGYQTLMRLSSEKMITEQLNLAAC 110

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
              L  L  +  EG         G +      +  +  ++ L      F  + L++ +   
Sbjct: 111  DSLQDLFGLLPEG--------EGFLPS--QHDDLEANQEALRAISHKFDSESLFLGITSK 160

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                       +       +   A      L++E+  A  V+  +   + +    + +  
Sbjct: 161  GLDSET-----IAWFNEQNIAPCAYQPIAALAQEEAFAVKVMTHIKEGSQIEDFRQAKEQ 215

Query: 250  --PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 +L+   ++ + F +  +AL N   IA  C+  L +H  +LP +        ++  
Sbjct: 216  GAAQLFLQPADQLTAAFEEWSQALMNNQRIAAECAVELPLHQRLLPHYPLP----AEESA 271

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR      L  R+A            Y QRLD+EL+VI +M F  YFLI+ D + +A
Sbjct: 272  ADYLRKICFERLPQRVAH-------VTSAYEQRLDYELSVIHKMGFDDYFLIIWDVMDFA 324

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +  I  G GRGS AG++ AY L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +RR
Sbjct: 325  HQQEIVTGAGRGSAAGALVAYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNRR 384

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+++YV+ KYG E +AQI TFG++ AK  LRDV R   +  S+ +R  K IPN     +
Sbjct: 385  DEILQYVRQKYGQEYMAQIATFGTMAAKMVLRDVSRVFGLSQSEANRWSKAIPNALKMTL 444

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A    ++ RE    +     + ++++ LEGL RH STHAAG+VI D+ L  LVP+  
Sbjct: 445  D-LAYEQSNQLRELVSFNERNQVMFQVAKILEGLPRHVSTHAAGVVISDKNLLDLVPLQ- 502

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
            +    + +TQF M  +E  GL+K DFLGL+ L+++  +L  + +     V    IP DD 
Sbjct: 503  EGSDGIWLTQFTMNDVEAIGLLKMDFLGLRNLSIIDNTLKGIKRISQQIVTQKEIPLDDP 562

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T GIFQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  RK 
Sbjct: 563  ATLRLFQKGETAGIFQFESAGIRNVLRKLGPESIEDITAVNALYRPGPMQNIDTFIKRKK 622

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+E++      + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +D
Sbjct: 623  GQERVSYPDDSLIPILQNTYGIIVYQEQIMQVASKMAGFSLGQADILRRAISKKKKDVLD 682

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +++  F+ GA  N   +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP  
Sbjct: 683  EERRHFVQGALANQYDEKTANLVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPAP 742

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGV 845
            F A+ +    +   K+K++  +A ++ ++++PPS+N     F++  + +I +  ++IKG+
Sbjct: 743  FFASILHSVRNTASKMKEYLNEAARYGVEVLPPSINASGFSFQLQNEKQIRFGFSSIKGI 802

Query: 846  GTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRR-----VLESLVFAGALDCFGYSRM 899
                 + I+    +   F S++ F  R++ +  N +      L  L+  G  D    +R 
Sbjct: 803  RRDMIQDILAERKEHGNFTSMDQFLLRLNQR--NSKWLKLDYLLPLLSIGVFDGIAPNRK 860

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            Q L  L+   +   +     +    ++           +  E  +      +   E+  L
Sbjct: 861  QALIQLEGKIQNITY-----SGGSLDLLETM------ALKEEAVADYKLEEKLALEEEYL 909

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G Y SGHP++ ++ + +   I    + V       +R+   V   ++ +T+KG ++ +V 
Sbjct: 910  GVYLSGHPVEQFQKLHQLKQITDIADLVP---NERVRILLYVRKIREIRTKKGEQMAFVE 966

Query: 1020 FSEPAKEYEANFFP 1033
             ++ +KE     FP
Sbjct: 967  GTDASKEVSVTIFP 980


>gi|304310903|ref|YP_003810501.1| Error-prone DNA polymerase [gamma proteobacterium HdN1]
 gi|301796636|emb|CBL44848.1| Error-prone DNA polymerase [gamma proteobacterium HdN1]
          Length = 1075

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 258/1033 (24%), Positives = 435/1033 (42%), Gaps = 75/1033 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S++S L+GA     ++ +  A    AIA+TD  +L   +    +A   GI+ I
Sbjct: 52   YAELFCLSNFSFLKGASHPEELVRQAHAQSYSAIALTDECSLAGVVRALVEAEKCGIKLI 111

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG                           V L  +   Y +L   +S      + K    
Sbjct: 112  IGSYF----------------VCEEGLRYVALAPSKLAYHQLSSYISHARRRSK-KGQYE 154

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRH 189
                 L+    + L++     +            +  +     F ++  +RL++ + Q  
Sbjct: 155  AHTKDLERHLRDCLLIWLPDRAYV----------ESTQADTQYFLQISRERLWIGIEQGF 204

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                  + +  + LA +  LP+VA    L  S       DVL A+  +T V Q      +
Sbjct: 205  CAITPEQFTWRMSLANSLHLPIVAVGGVLTHSASRQPVQDVLTAIRLNTTVDQAGFELQS 264

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                   +            AL+NTVEIA RC F L+      P                
Sbjct: 265  NR-ERHLQRLEELQNRFPKAALQNTVEIANRCLFSLRELRYEYPHESVP----SNVSPTQ 319

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR    +G   R  +G +      +  R +L+ EL++IA + +  YFL V D +Q+A+ 
Sbjct: 320  YLRAITYSGARQRWPEGIL------EKVRAQLEKELHIIAELHYEYYFLTVYDIVQFARS 373

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I    GRGS A S   + L IT++DP    LLFERF++ +R   PD D+DF  +RR+E
Sbjct: 374  RRIL-CQGRGSAANSAVCFCLFITEVDPAIHHLLFERFISKERNEPPDIDVDFEHERREE 432

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            +I+++  KYG +R A   +  + + K+ALRDV +AL    + +D L +L+          
Sbjct: 433  IIQFIYQKYGRQRAALTASVITWRLKSALRDVAKALGFDGTLIDPLNRLLTWWD----QP 488

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
              +A+             V +L+ +   L    RH S H  G +I D  L QLVP+    
Sbjct: 489  DQLAEQLMTIGLDYNQRRVRQLIYLVNILLRFPRHLSQHTGGFIISDGHLDQLVPIENAS 548

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHET 608
              D  V Q++   IE  GL+K D L L  L+ +++  D LA  RG    ++ +P +D E 
Sbjct: 549  MPDRTVVQWDKDDIETLGLMKIDILALGMLSAIRRCFDLLAPIRGRHWSMATLPAEDPEV 608

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            Y +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGP+   +V+   K  +
Sbjct: 609  YQMLQQADSIGVFQVESRAQMSMLPRLKPACFYDLVIQVAIVRPGPMQGNMVHPFLKRRQ 668

Query: 669  --EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM- 725
              E +      ++ +LK T GV I+QEQV+++A L +G+S  EAD LRRAM    K+   
Sbjct: 669  GLESVEYPGKEVESVLKRTLGVPIFQEQVIELAMLAAGFSAGEADQLRRAMASWKKKGEL 728

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             + +E+   G    G     A  I E +  F +YGF +SHAA++A++ Y +AW+K H P 
Sbjct: 729  QRHQEKLHHGLMARGYITEFAERIIEQINGFGEYGFPESHAASFALLVYVSAWLKCHEPA 788

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRIYYSL 839
             F  A +  +        +  QDAR+ N++I    V     +  +          +   L
Sbjct: 789  AFCCALLNSQPMGFYSASQLVQDARRHNVEIRTVDVMCSQWEHSLEPLSGRQQPALRLGL 848

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
              +K   +   + ++ A   + F S+ D   R     LN++ +++L    AL     +R 
Sbjct: 849  CMLKDFSSIGGQSLLRARKQRAFQSIADLKQRA---FLNQKDMDALAHGNALLTLTGNRH 905

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            Q       +      V+ +  +    +                      +     + R L
Sbjct: 906  QARWESMALHAPTALVDASNESDISVL----------------LRAPTEAKDMLEDYRSL 949

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G     HP+ + +        K  +E         +++A +V  +Q+  T KG  + ++T
Sbjct: 950  GLTLGRHPMALLRNHAALKVCKLQKEVCLLSTRRFVQVAGIVTCRQRPGTAKG--VMFLT 1007

Query: 1020 FSEPAKEYEANFF 1032
              +    +    +
Sbjct: 1008 LEDETGNHNIVIW 1020


>gi|257877689|ref|ZP_05657342.1| DNA polymerase III alpha subunit [Enterococcus casseliflavus EC20]
 gi|257811855|gb|EEV40675.1| DNA polymerase III alpha subunit [Enterococcus casseliflavus EC20]
          Length = 1103

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 305/1034 (29%), Positives = 519/1034 (50%), Gaps = 66/1034 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S+YSLL+  + + + +++        + +TD N L+ A+EF Q+  A GI+PI
Sbjct: 2    YSQLTTLSAYSLLQSTIKIPHYIEQAKKMGYQTLGLTDHNVLYGAVEFYQQCLAQGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G   D    +                 + +     +GYQ L+ L S   + +Q   +  
Sbjct: 62   FGALFDCTFGEGSM-----------SFPLYVFAKNLKGYQTLMRLSSEKMITEQLNLAAC 110

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
              L  L  +  EG         G +      +  +  ++ L      F  + L++ +   
Sbjct: 111  DSLQDLFGLLPEG--------EGFLPS--QHDDLEANQEALRAISHKFDSESLFLGITSK 160

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                       +       +   A      L++E+  A  V+M +   + +    + +  
Sbjct: 161  GLDPET-----IAWFNEQNIAPCAYQPIAALAQEEAFAVKVMMHIKEGSQIEDFRQAKEQ 215

Query: 250  --PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 +L+   ++ + F +  +AL N   IA  C+  L +H  +LP +        ++  
Sbjct: 216  GAAQLFLQPADQLTAAFEEWSQALMNNQRIAAECAVELPLHQRLLPHYPLP----AEESA 271

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR      L  R+A            Y QRLD+EL+VI +M F  YFLI+ D + +A
Sbjct: 272  ADYLRKICFERLPQRVAH-------VTSAYEQRLDYELSVIHKMGFDDYFLIIWDVMDFA 324

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +  I  G GRGS AG++ AY L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +RR
Sbjct: 325  HQQEIVTGAGRGSAAGALVAYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNRR 384

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+++YV+ KYG E +AQI TFG++ AK  LRDV R   +  S+ +R  K IPN     +
Sbjct: 385  DEILQYVRQKYGQEYMAQIATFGTMAAKMVLRDVSRVFGLSQSEANRWSKAIPNALKMTL 444

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A    ++ RE    +     + ++++ LEGL RH STHAAG+VI D+ L  LVP+  
Sbjct: 445  D-LAYEQSNQLRELVSFNERNHVMFQVAKILEGLPRHVSTHAAGVVISDKNLLDLVPLQ- 502

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
            +    + +TQF M  +E  GL+K DFLGL+ L+++  +L  + +     V    IP DD 
Sbjct: 503  EGSDGIWLTQFTMNDVEAIGLLKMDFLGLRNLSIIDNTLKGIKRISQQIVTQKEIPLDDP 562

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T GIFQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  RK 
Sbjct: 563  ATLRLFQKGETAGIFQFESAGIRNVLRKLGPESIEDIAAVNALYRPGPMQNIDTFIKRKK 622

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+E++      + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +D
Sbjct: 623  GQERVSYPDDSLIPILQNTYGIIVYQEQIMQVASKMAGFSLGQADILRRAISKKKKDVLD 682

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +++  F+ GA  N   +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP  
Sbjct: 683  EERRHFVQGALANQYDEKTANLVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPAP 742

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGV 845
            F A+ +    +   K+K++  +A ++ ++++PPS+N     F++  + +I +  ++IKG+
Sbjct: 743  FFASILHSVRNTASKMKEYLNEAARYGVEVLPPSINASGFSFQLQNEKQIRFGFSSIKGI 802

Query: 846  GTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRR-----VLESLVFAGALDCFGYSRM 899
                 + I+        F S++ F  R++ +  N +      L  L+  G  D    +R 
Sbjct: 803  RRDMIQDILAERKQHGNFTSMDQFLLRLNQR--NSKWLKLDYLLPLLSIGVFDVIAPNRK 860

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            Q L  L+   +   +     +    ++           +  E  +      +   E+  L
Sbjct: 861  QALIQLEGKIQNITY-----SGGSLDLLETM------ALKEEAVADYKLEEKLALEEEYL 909

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G Y SGHP++ ++ + +   I    + V       +R+   V   ++ +T+KG ++ +V 
Sbjct: 910  GVYLSGHPVEQFQKLHQLKQITDIADLVP---NERVRILLYVRKIREIRTKKGEQMAFVE 966

Query: 1020 FSEPAKEYEANFFP 1033
             ++ +KE     FP
Sbjct: 967  GTDASKEVSVTIFP 980


>gi|218247224|ref|YP_002372595.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 8801]
 gi|257061441|ref|YP_003139329.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 8802]
 gi|218167702|gb|ACK66439.1| DNA polymerase III, alpha subunit [Cyanothece sp. PCC 8801]
 gi|256591607|gb|ACV02494.1| DNA polymerase III, alpha subunit [Cyanothece sp. PCC 8802]
          Length = 874

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 298/787 (37%), Positives = 451/787 (57%), Gaps = 44/787 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  LN ++D+    + PAIA+TD   ++ A+E  +     GI+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLNALVDRAVELEMPAIALTDHGVMYGAIELMKVCRNKGIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ +  +D        K         V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62  IIGNEMYVINEDIEVNKRHRK------YHQVVLAKNTQGYKNLVKLTTISHLKGIQGKGI 115

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L +   EGLI+ +    G + ++     ++ A+     ++KLF D  Y+ 
Sbjct: 116 FARPCINKELLTQYH-EGLIVTSACLGGEVPQSILAGDTKQAKTVAKWYQKLFKDDYYLE 174

Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR    ++V++A    + ++ATN+S F+S  D EAHD L+ +    ++++  
Sbjct: 175 IQDHGSQEDRIVNRELVKIARDLGIKIIATNDSHFISCYDVEAHDALLCIQTGKLITEDK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECD- 301
           R R +   YLK+  EM  +F D    + +E  +      +  ++ +  I           
Sbjct: 235 RLRYSGTEYLKSAEEMALLFRDHLPDDVIEEAINNTLEVADKIEPYKNIFGEPRIPNYPV 294

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                 ++ +   A  GL  RL     ++G  +  Y++RL++EL ++ RM FS YFL+V 
Sbjct: 295 PSGHTPDSYVEEIAWEGLLERLKC--RSRGEISDVYKERLEYELKMLQRMGFSTYFLVVW 352

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           D+I++A+ N IPVGPGRGS AGS+ AY L IT+IDP+   LLFERFLNP+R SMPD D D
Sbjct: 353 DYIKYARDNGIPVGPGRGSAAGSLVAYCLKITNIDPVHHGLLFERFLNPERKSMPDVDTD 412

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC +RRDE+I+YV  KYG   VAQIITF  + +KA L+DV R L +PYS+ D++ K+IP 
Sbjct: 413 FCIERRDEMIKYVTEKYGEANVAQIITFNRMTSKAVLKDVARVLDIPYSESDKMAKMIPV 472

Query: 482 DPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
               P  L+ +  D      F+E    DP V R L+++ ++EG  +    HAAG+VI   
Sbjct: 473 SRGKPTKLKVMISDETPCPEFKERYDNDPQVRRWLDMAIRIEGTNKTFGVHAAGVVISSE 532

Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
           PL ++VP+ ++      +TQ+ M+ +E  GL+K DFLGL+ LT +QK+ + + Q      
Sbjct: 533 PLDEIVPLQKN-NEGSVITQYFMEDLESLGLLKMDFLGLRNLTTIQKTAELIKQNRKVEL 591

Query: 598 LSLIPF--------------------DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
                                     D  +T+ LL      GIFQLESSGM+Q ++ ++P
Sbjct: 592 DLDQLPLEERKALQIIAKGTAKKLPEDIQKTHKLLERGDLEGIFQLESSGMKQIVKDLKP 651

Query: 638 DCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
             IEDI ++++LYRPGP+D   I  + NRK+G+E I   H L++P+LKET  V++YQEQ+
Sbjct: 652 SGIEDISSILALYRPGPLDAGLIPKFINRKHGQEPIKYEHRLLEPILKETYAVLVYQEQI 711

Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
           M++AQ L+GYSL EAD+LRRAMGKK   EM+K +E+FI GA+KNG+ K IA N+F  + +
Sbjct: 712 MKMAQDLAGYSLGEADLLRRAMGKKKISEMEKHREKFIEGAAKNGVIKEIAENLFTQMVQ 771

Query: 756 FADYGFN 762
           FA+Y  +
Sbjct: 772 FAEYCLS 778


>gi|298492518|ref|YP_003722695.1| DNA polymerase III subunit alpha ['Nostoc azollae' 0708]
 gi|298234436|gb|ADI65572.1| DNA polymerase III, alpha subunit ['Nostoc azollae' 0708]
          Length = 877

 Score =  502 bits (1293), Expect = e-139,   Method: Composition-based stats.
 Identities = 294/786 (37%), Positives = 446/786 (56%), Gaps = 43/786 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+       AIA+TD   ++ A+E  +   +  I+P
Sbjct: 2   SFVPLHIHSDYSLLDGASQLPELVDQAITLGMKAIALTDHGVMYGAVELIKVCRSKNIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ I   D  K   + K         V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62  IIGNEMYIINGDIEKQERRPK------YHQVVLAKNTKGYRNLVKLTTISHLQGVQGKGI 115

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I  + L+E   EGLI+ +    G I +A        A K    +K++FG+  Y+ 
Sbjct: 116 FSRPCINKNSLKEY-KEGLIVTSACLGGEIPQAILSKRPDAARKVAKWYKEVFGEDFYLE 174

Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR    ++V++A    +  +ATN+S ++S  D EAHD L+ +    ++S+  
Sbjct: 175 IQDHGSQEDRIVNVEIVKIARELGIKFIATNDSHYISCFDVEAHDALLCIQTGQLISEDK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           R R +   YLK+  EM  +F D      +   +         ++ +  +    I      
Sbjct: 235 RMRYSGTEYLKSAQEMQQLFRDHLPDYVIAEAIATTEEVGDKIEPYHIMDEPKIPTPPIP 294

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                +      A  GL  RL     ++    Q Y++RL++EL ++ RM FS YFL+V D
Sbjct: 295 SGHTPDTYAEEIAWQGLLERL--NRKSRSEVDQIYKERLEYELKMLQRMGFSTYFLVVWD 352

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           +I++A+ NNIPVGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 353 YIKFARDNNIPVGPGRGSAAGSLVAYAMRITNIDPVHHGLLFERFLNPERKSMPDIDTDF 412

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           C ++RD+VI YV NKYG +RVAQIITF  L +KA L+DV R L +PY + D++ K+IP  
Sbjct: 413 CIEKRDQVIEYVTNKYGADRVAQIITFNRLTSKAVLKDVARVLDIPYGEADKMAKMIPVV 472

Query: 483 PAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
              P  L+ +  +      F+E    D  +   L+++ ++EG  +    HAAG+VI   P
Sbjct: 473 RGKPTKLKVMVSNETPAPEFKEKYDHDAKIRHWLDMAMRIEGTNKTFGVHAAGVVISAEP 532

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-- 596
           L ++VP+ R+      +TQ+ M+ +E  GL+K DFLGL+ LTL+QK++D + +       
Sbjct: 533 LDEIVPLQRN-NDGSVITQYFMEDLESLGLLKMDFLGLRNLTLIQKTIDLIQETNGYKID 591

Query: 597 ------------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                               S +P +  + Y LL +    G+FQLESSGM+Q +  ++P 
Sbjct: 592 PDEITGQERKAQHILAKGQHSTLPKEVQKAYSLLESGDLEGVFQLESSGMKQIVRDLKPS 651

Query: 639 CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            IEDI ++++LYRPGP+D   I  + NRK+ +E+I     +++P+L ET G+++YQEQ+M
Sbjct: 652 NIEDISSILALYRPGPLDAGLIPKFINRKHRREEIEYETGILEPILNETYGIMVYQEQIM 711

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
           +IAQ ++GYSL +AD+LRRAMGKK   EM KQ+E+FI GA KNG+ K +A  +F  + KF
Sbjct: 712 KIAQDMAGYSLGQADLLRRAMGKKKVSEMQKQEEKFIDGAMKNGVKKQVAEKLFADMLKF 771

Query: 757 ADYGFN 762
           A+Y  +
Sbjct: 772 AEYCLS 777


>gi|282899282|ref|ZP_06307253.1| DNA polymerase III, alpha subunit [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195851|gb|EFA70777.1| DNA polymerase III, alpha subunit [Cylindrospermopsis raciborskii
           CS-505]
          Length = 893

 Score =  502 bits (1293), Expect = e-139,   Method: Composition-based stats.
 Identities = 286/787 (36%), Positives = 447/787 (56%), Gaps = 44/787 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-GIQ 68
           SFV L +HS YSLL+GA  +  ++++  A    ++A+TD   ++ A+E  +   +  G +
Sbjct: 2   SFVPLHLHSDYSLLDGASQIPELVEQAIALGMNSLALTDHGVMYGAIELIKICRSKPGFK 61

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ 127
           PIIG ++ I   D  K   + +         V+L    +GY+ L++L +  +L   QGK 
Sbjct: 62  PIIGNEMYIINGDIEKQERRAR------YHQVVLAKNTKGYKNLVKLTTISHLKGTQGKG 115

Query: 128 ---SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 I    L+E   EGLI+ +   +G I +A      + A K    +K++FG+  Y+
Sbjct: 116 IFSRPCINKDLLKE-HKEGLIVTSACLAGEIPQALLGGKLEKARKVATWYKEVFGEDFYL 174

Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +Q H    DR    ++V++A   ++  +ATN+S ++S  D EAHD L+ +    +++  
Sbjct: 175 EIQDHGSQEDRIVNVELVKIARELDIKFIATNDSHYISCFDVEAHDALLCIQTGKLIADD 234

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            R R +   YLK+  EM  +F D    + +   +      +  ++V+  +    I     
Sbjct: 235 KRMRYSGTEYLKSTQEMQLLFRDHLTDDVIAEAIATTTEVAEKVEVYNIMDEPKIPAPPI 294

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                 +      A  GL  RL     ++      Y++RL++EL +I +M FS YFL+V 
Sbjct: 295 PTGHTPDTYTEEVAWQGLLKRL--NRKSRNEVDTVYKERLEYELKMIEQMGFSSYFLVVW 352

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           D+I++A+ +NIPVGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R SMPD D D
Sbjct: 353 DYIKFARDHNIPVGPGRGSAAGSLVAYAMGITNIDPVHHGLLFERFLNPERKSMPDIDTD 412

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC ++RD+VI YV  KYG ++VAQIITF  L +KA L+DV R L +PY + D++ K+IP 
Sbjct: 413 FCIEKRDQVISYVTEKYGVDKVAQIITFNRLTSKAVLKDVARVLDIPYGEADKMAKMIPV 472

Query: 482 DPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
               P  L+ +      +  F+     +  V R ++++ ++EG  +    HAAG+VI   
Sbjct: 473 VRGKPTKLKVMISDETPEPEFKAKYDKEQHVRRWIDMAMRIEGTNKTFGVHAAGVVISSE 532

Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
           PL ++VP+ ++      +TQ+ M+ +E  GL+K DFLGL+ LTL+QK++D + Q      
Sbjct: 533 PLDEIVPLQKN-NDGSVITQYFMEDLESLGLLKMDFLGLRNLTLIQKTIDLIEQNRGYTI 591

Query: 598 LSLI--------------------PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
                                   P D  + Y LL +    G+FQLESSGM+Q +  ++P
Sbjct: 592 DPDDITRQERKAQKILAKGEYSTLPKDVAQAYSLLESGDLEGVFQLESSGMKQIVRDLKP 651

Query: 638 DCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
             IEDI ++++LYRPGP+D   I  + NRK+G+E I     ++ P+L ET G+++YQEQ+
Sbjct: 652 SNIEDISSILALYRPGPLDAGLIPKFINRKHGREPIDYESQILQPILNETYGIMVYQEQI 711

Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
           M+IAQ ++GYSL +AD+LRRAMGKK   EM KQ+E+FI GA+KNG+ K +A  +F  + K
Sbjct: 712 MKIAQDMAGYSLGQADLLRRAMGKKKVAEMQKQQEKFIDGATKNGVKKQVAEQLFADMLK 771

Query: 756 FADYGFN 762
           FA+Y  +
Sbjct: 772 FAEYCLS 778


>gi|288940218|ref|YP_003442458.1| DNA polymerase III subunit alpha [Allochromatium vinosum DSM 180]
 gi|288895590|gb|ADC61426.1| DNA polymerase III, alpha subunit [Allochromatium vinosum DSM 180]
          Length = 2069

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 300/718 (41%), Positives = 432/718 (60%), Gaps = 21/718 (2%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P+FVHL +HS YSL++G + +  ++  +AA   PA+A+TD  NLFS + F + A  AG++
Sbjct: 3   PTFVHLHLHSEYSLVDGLVRIKPLVKTVAAAGMPAVAVTDQGNLFSLVRFYKAAVGAGVK 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PI G  L +   ++    +           +VLL     GY+ L  L+SR ++  Q    
Sbjct: 63  PIAGADLWVRNPEDANHPH----------RLVLLAQDEPGYRNLTRLISRGFVEGQHLGV 112

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            ++   W+ E   +GLI L+GG  G +  A       +AE+RL  +  +F DR Y+ L R
Sbjct: 113 AQVERDWILEAH-QGLIALSGGPRGDVAEALLKGRDAIAEQRLDAWLSVFEDRYYLELMR 171

Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                +       V LA    +P+VATN+  FL+  D+EAH+  + +     +    RPR
Sbjct: 172 TGRALEGELIESSVDLAIRRGVPVVATNDVRFLAAGDFEAHEARVCIHQGRTLDDPRRPR 231

Query: 248 -VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             + + YL+  +EM  +F+DLPEALENTVEIA+RC+  L++    LP F   E       
Sbjct: 232 DYSEEQYLRTPAEMAELFADLPEALENTVEIAKRCNLELKLGKNYLPVFPVPEGMTTDSF 291

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + R      LE  L + A       + Y +RL+ EL VI +M F GYFLIVADFIQW
Sbjct: 292 FAEQSRRGLEWRLERILDRDAPDYAERRRVYEERLETELAVIIQMGFPGYFLIVADFIQW 351

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           AK N IPVGPGRGSGAGS+ AYAL ITD+DP+   LLFERFLNP+R+SMPDFDIDFC + 
Sbjct: 352 AKDNGIPVGPGRGSGAGSLVAYALKITDLDPIEHELLFERFLNPERVSMPDFDIDFCMEG 411

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           RD VI YV  KYG E V+QIITFG++ AKA +RDVGR +  PY  VD++ K++P +    
Sbjct: 412 RDRVIDYVARKYGREAVSQIITFGTMAAKAVVRDVGRVMGHPYGFVDKIAKMVPFELGMT 471

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
           +  +A+ +    + A   D  V  +L++++KLEGL R+A  HA G+VI    L+   P+Y
Sbjct: 472 LE-KALKESEDLKRAYDQDEEVRAILDMARKLEGLTRNAGKHAGGVVIAPTVLTDFAPLY 530

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-----FLAQRGVKVDLSLI 601
            +      VTQ++   +E+ GL+KFDFLGL+TLT++  +L        A+    +D+  I
Sbjct: 531 CEPGGANLVTQYDKDDVEQVGLVKFDFLGLRTLTIIDWALKTINAGRAAKGEPPLDIERI 590

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV-- 659
              D E + LL    T  +FQLES GM++ ++ +QPDC ++I ALV+L+RPGP+ + +  
Sbjct: 591 DPRDQEAFDLLKRCETTAVFQLESRGMKELIKKLQPDCFDEITALVALFRPGPLQSGMVD 650

Query: 660 VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            +  RK+G+ ++   HP ++P+LK T G+I+YQEQVMQIAQ+L+GYSL  AD+LRR +
Sbjct: 651 DFIERKHGRAEVAYPHPDLEPILKPTYGIILYQEQVMQIAQVLAGYSLGGADILRRCL 708



 Score =  268 bits (684), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 141/284 (49%), Gaps = 16/284 (5%)

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+AAYA++SYQT W+K HYP  F+AA ++ +MDN +K+     + R   +++ PP++N 
Sbjct: 1628 SHSAAYALVSYQTLWLKAHYPAAFMAAVLSADMDNTDKVVTLIDECRTMKLRVDPPAINR 1687

Query: 824  PCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRV 881
                F +  D  + Y L A+KGVG +    ++EA  A   F  L DFC R+D +++NRRV
Sbjct: 1688 SDYHFTIADDKTVVYGLGAVKGVGESAIEAMLEARRAGGSFRDLWDFCGRIDLQRVNRRV 1747

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL- 940
            LESL+ AGALD  G +R  L+  L    K A+     R     ++F   + +        
Sbjct: 1748 LESLIRAGALDELGPNRATLMAHLPLALKAAEQYHSTRAAGQVDLFGALEPSGPPTPDPQ 1807

Query: 941  ---EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT-------- 989
               E  +      R + E+  LG Y +GHP+D Y+  L+ MG       + T        
Sbjct: 1808 LARETLADWEDEQRLQGEKETLGLYLTGHPIDRYEDELKAMGGARIARLLETDRELGRRD 1867

Query: 990  -IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                    +  +VV  +  KT++G R+G V   +     EA  F
Sbjct: 1868 RRDREKRTVVGLVVGVRHGKTQRG-RMGSVVLDDRTGRIEATVF 1910


>gi|325571261|ref|ZP_08146761.1| DNA-directed DNA polymerase III alpha subunit [Enterococcus
            casseliflavus ATCC 12755]
 gi|325155737|gb|EGC67933.1| DNA-directed DNA polymerase III alpha subunit [Enterococcus
            casseliflavus ATCC 12755]
          Length = 1103

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 305/1034 (29%), Positives = 521/1034 (50%), Gaps = 66/1034 (6%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L   S+YSLL+  + + + +++        + +TD N L+ A+EF Q+  A GI+PI
Sbjct: 2    YSQLTTLSAYSLLQSTIKIPHYIEQAKKMGYQTLGLTDHNVLYGAVEFYQQCLAQGIKPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G   D    +                 + +     +GYQ L+ L S   + +Q   +  
Sbjct: 62   FGALFDCTFGEGSM-----------SFPLYVFAKNLKGYQTLMRLSSEKMITEQLNLAAC 110

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
              L  L  +  EG         G +      +  +  ++ L      F  + L++ +   
Sbjct: 111  DSLQDLFGLLPEG--------EGFLPS--QHDDLEANQEALRAISHKFDSESLFLGITSK 160

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
                       +       +   A      L++E+  A  V+  +   + +    + +  
Sbjct: 161  GLDPET-----IAWFNEQNIAPCAYQPIAALAQEEAFAVKVMTHIKDGSQIEDFRQAKEQ 215

Query: 249  -TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             T   +L+   ++ + F +  +AL N   IA  C+  L +H  +LP +   +    ++  
Sbjct: 216  ATTQLFLQPADQLTASFGEASQALMNNQRIAAECAVELPLHQRLLPHYPLAQ----EESA 271

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR      L  R+A            Y QRLD+EL+VI +M F  YFLI+ D + +A
Sbjct: 272  ADYLRKICFERLPQRVAH-------VTSAYEQRLDYELSVIHKMGFDDYFLIIWDVMDFA 324

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
             +  I  G GRGS AG++ AY L+ITD+DP+++ LLFERFLNP+R +MPD D+D   +RR
Sbjct: 325  HQQEIVTGAGRGSAAGALVAYVLSITDVDPIKYDLLFERFLNPERYTMPDIDLDIPDNRR 384

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            DE+++YV+ KYG E +AQI TFG++ AK  LRDV R   +  S+ +R  K IPN     +
Sbjct: 385  DEILQYVRQKYGQEYMAQIATFGTMAAKMVLRDVSRVFGLSQSEANRWSKAIPNALKMTL 444

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
               A    ++ RE    +     + ++++ LEGL RH STHAAG+VI D+ L  LVP+  
Sbjct: 445  D-LAYEQSNQLRELVSFNERNQVMFQVAKILEGLPRHVSTHAAGVVISDKNLLDLVPLQ- 502

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
            +    + +TQF M  +E  GL+K DFLGL+ L+++  +L  + +     V    IP DD 
Sbjct: 503  EGSDGIWLTQFTMNDVEAIGLLKMDFLGLRNLSIIDNTLKGIKRISQQIVTQKEIPLDDP 562

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
             T  L     T GIFQ ES+G+R  L  + P+ IEDI A+ +LYRPGP+ NI  +  RK 
Sbjct: 563  ATLRLFQKGETAGIFQFESAGIRNVLRKLGPESIEDIAAVNALYRPGPMQNIDTFIKRKK 622

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+E++      + P+L+ T G+I+YQEQ+MQ+A  ++G+SL +AD+LRRA+ KK K+ +D
Sbjct: 623  GQERVSYPDDSLIPILQNTYGIIVYQEQIMQVASKMAGFSLGQADILRRAISKKKKDVLD 682

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +++  F+ GA  N   +  A  +++ + +FA+YGFN+SHA AY+ I +Q A++K HYP  
Sbjct: 683  EERRHFVQGALANHYDEKTANLVYDYIERFANYGFNRSHAFAYSFIGFQMAYLKVHYPAP 742

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGV 845
            F A+ +    +   K+K++  +A ++ ++++PPS+N     F++  + +I +  ++IKG+
Sbjct: 743  FFASILHSVRNTASKMKEYLNEAARYGVEVLPPSINASGFSFQLQNEKQIRFGFSSIKGI 802

Query: 846  GTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRR-----VLESLVFAGALDCFGYSRM 899
                 + I+    +   F S++ F  R++ +  N +      L  L+  G  D    +R 
Sbjct: 803  RRDMIQDILAERKEHGNFTSMDQFLLRLNQR--NSKWLKLDYLLPLLSIGVFDGIAPNRK 860

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            Q L  L+   +   +     +    ++           +  E  +      +   E+  L
Sbjct: 861  QALIQLEGKIQNITY-----SGGSLDLLETM------ALKEEAVADYKLEEKLALEEEYL 909

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G Y SGHP++ ++ + +   I    + V       +R+   V   ++ +T+KG ++ +V 
Sbjct: 910  GVYLSGHPVEQFQKLHQLKQITDIADLVP---NERVRILLYVRKIREIRTKKGEQMAFVE 966

Query: 1020 FSEPAKEYEANFFP 1033
             ++ +KE     FP
Sbjct: 967  GTDASKEVSVTIFP 980


>gi|148980529|ref|ZP_01816102.1| putative DNA polymerase III alpha chain [Vibrionales bacterium
            SWAT-3]
 gi|145961182|gb|EDK26497.1| putative DNA polymerase III alpha chain [Vibrionales bacterium
            SWAT-3]
          Length = 1030

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 247/1041 (23%), Positives = 429/1041 (41%), Gaps = 79/1041 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   +  L   S+YS LEGA     ++ +    +  A+A+TD  ++   ++       
Sbjct: 1    MSQQ--YSELFCQSNYSFLEGASHAEELVLQADFLRYKALAVTDECSVAGIVKVHSAIKQ 58

Query: 65   AG--IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                I+ I+G    ++                    +VLL    + Y  L  +++     
Sbjct: 59   HKLSIKQIVGSMFWLN----------------EKCQMVLLCPNRKAYAELCRIITNARRR 102

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                      LS    +  +   +L           +                +    RL
Sbjct: 103  S---SKGHYQLSEWDIMSAKHCFIL-----------WLPQQKTEDAHWGQWLSQHHSGRL 148

Query: 183  YVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++ LQRH +  D+      V+L++ H LP+ A    L  +         L A+ +     
Sbjct: 149  WIGLQRHLKQTDQQYIDYCVELSHHHHLPMTACGGVLMHNANRLPLQHSLTAIKYQKP-I 207

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             +    +  +     RS          E LE +  IA  C F L       P  +  + +
Sbjct: 208  TEVGTHLLANAERCLRSINKLSHIFKTEWLEESNRIAELCDFDLDSLRYEYPSELIPQGE 267

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                   + LR     G + R  QG         D +Q +D EL +I  + +  +FL + 
Sbjct: 268  ----TPMSYLRMLVEKGKQARFPQGV------PSDIQQIIDKELGLIDELDYPFFFLTIL 317

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +AK   I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+D
Sbjct: 318  DIVMFAKSQGILY-QGRGSAANSVVCYCLEITSVDPRQISVLFERFISKERDEPPDIDVD 376

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+E+I+Y+  KYG ER A   T  S + K+A+RDVG+AL +  +Q+D   K    
Sbjct: 377  FEHERREEIIQYIYQKYGRERAALAATVISYRFKSAVRDVGKALGLQETQLDYFIKNTNR 436

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                      +         +       + + +  ++ G  RH S H  G VI   PL +
Sbjct: 437  RDKSLGWQAQLT----LLGIQPDSLKGQQFIHLVNEIIGFPRHLSQHVGGFVISSGPLYE 492

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVDL 598
            LVP+      D  + Q++   +E  GL+K D L L  L+ ++K  D + +   R + +  
Sbjct: 493  LVPVENAAMHDRTIIQWDKDDLETLGLLKVDVLALGMLSAIRKCFDLIKRIHGRSLTIAE 552

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
                 DD + Y ++    T+GIFQ+ES      L  ++P    D++  +++ RPGPI   
Sbjct: 553  ITRLKDDPQVYGMIQRADTVGIFQIESRAQMSMLPRLKPRTYYDLVIQIAIVRPGPIQGD 612

Query: 659  VVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V+    R++G E I      ++ +L  T GV I+QEQV+++A + +G++  EAD LRRA
Sbjct: 613  MVHPYLKRRDGIEPISYPSKEVESVLSRTMGVPIFQEQVIKLAMVAAGFTGGEADQLRRA 672

Query: 717  MGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M    K   + K K + I G  K G     A  IF+ +  F +YGF +SH+A++AV++Y 
Sbjct: 673  MAAWKKNGNVFKFKNKLIEGMQKRGYDIEFAEQIFKQICGFGEYGFPESHSASFAVLAYC 732

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----G 831
            +AW+K +YP  F A+ +  +        +  QDA++ N+ I+P  VN    +  V     
Sbjct: 733  SAWLKCYYPECFYASLLNSQPMGFYSPSQLVQDAQRHNVAILPVCVNASQDNHTVVSQQN 792

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I   +  IKG+     + ++       +         V    +N++ +E L  A AL
Sbjct: 793  GLAIRLGMRQIKGLSEHGIQSVLANRPSSGYRHPSQ----VKQLSINKKDIELLASANAL 848

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
                  R Q   ++ +            +     +F+    +F      +     +    
Sbjct: 849  HNVSGDRFQTRWAIMD------------SASDLPLFSQIDDSFEKGNDEQGLQQPSEMQD 896

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +   +G   + HP+ + +   R       ++       + + +  +V  KQ   T  
Sbjct: 897  LLEDFTSVGISLNKHPITLLEEANRLGRFTHMKDLKQQRHKSMVTVVGLVTGKQSPGTAA 956

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G  + +VT  +         +
Sbjct: 957  G--VTFVTLEDNTGNINVVVW 975


>gi|218297030|ref|ZP_03497707.1| DNA polymerase III, alpha subunit [Thermus aquaticus Y51MC23]
 gi|218242585|gb|EED09122.1| DNA polymerase III, alpha subunit [Thermus aquaticus Y51MC23]
          Length = 1645

 Score =  502 bits (1291), Expect = e-139,   Method: Composition-based stats.
 Identities = 325/823 (39%), Positives = 463/823 (56%), Gaps = 70/823 (8%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAA----DQQPAIAITDTNNLFSALEFSQ 60
           +     F HL  H+ +SLL+GA  L ++L  +      D  PA+A+TD  NLF A+EF +
Sbjct: 1   MGSKLKFAHLHQHTQFSLLDGAAKLQDLLKWVKETTPED--PALAMTDHGNLFGAVEFYK 58

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
           KA A G++PIIG +  +  +       +GK        + LL     GYQ L+ L SR Y
Sbjct: 59  KATAMGVKPIIGYEAYVAAESRFDR-KRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAY 117

Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
           L +   +  RI    L+E  +EGLI L+G     I +    +   +AE RL  +  +FGD
Sbjct: 118 L-EGFYEKPRIDREILRE-HSEGLIALSGCLGAEIPQFILQDRLDLAEARLNEYLSIFGD 175

Query: 181 RLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           R ++ +Q H   ++ + +QV+ + A  + L +VATN+  ++ +ED  AH+VL+A+   T 
Sbjct: 176 RFFIEIQNHGLPEQQKVNQVLKEFAQRYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTT 235

Query: 240 VSQKDRPRVTPD-HYLKNRSEMVSIFSDLPE---ALENTVEIARRCSFILQVHAPILPRF 295
           +   +R R   D  Y+K   EM ++  ++       +NTVEIAR C   L +   ++ R 
Sbjct: 236 LDDPERWRFPCDEFYVKTPEEMRAMLPEVEWGDEPFDNTVEIARMCDVDLPIGDKMVYR- 294

Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA--------------------- 334
           I +      + E   LR     GL  R         Y                       
Sbjct: 295 IPRFPLPEGRTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLGTMPPHGDERVLAEAL 354

Query: 335 --------------------------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
                                     +    R  +EL+VI RM F GYFLIV D+I WA+
Sbjct: 355 ARVEEKAWEELRKRLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWAR 414

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            + + VGPGRGS AGS+ AYA+ IT+IDPLRF LLFERFLNP+R+SMPD D DF    RD
Sbjct: 415 GHGVSVGPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERD 474

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            VI+YV+ +YG ++VAQI TFGSL +KAAL+DV R   +P+ + + L KLIP     P  
Sbjct: 475 RVIQYVRERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKP 534

Query: 489 LQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
           LQ         R     D  + +++E++ +LEGL RHAS HAAG+VI   PL+ LVP+ R
Sbjct: 535 LQEAVQVVPELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMR 594

Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDH 606
           D +   PVTQ++M  +E  GL+K DFLGL+TLT L ++   + + +GV++D   +P DD 
Sbjct: 595 D-QEGRPVTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKESKGVELDYDRLPLDDP 653

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
           +T+ LL+   T G+FQLES GM   + G++P  +EDIIALVSLYRPGP+++I  Y  R +
Sbjct: 654 KTFELLSRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRHH 713

Query: 667 GKEKIVS---IHPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
           G+E +      H    + P+L ET G+ +YQEQ+MQIA  ++GYSL EAD+LRRAMGKK 
Sbjct: 714 GQEPVSYAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKR 773

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            EEM K +ERF+ GA + G+ +  A  +F++L  FA+YGFNK 
Sbjct: 774 VEEMQKHRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKC 816



 Score =  254 bits (648), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 101/274 (36%), Positives = 149/274 (54%), Gaps = 12/274 (4%)

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAAAY+++SYQTA++K HYPVEF+AA +++E  + +K+ ++ +DAR   I ++PP +N 
Sbjct: 1241 SHAAAYSLLSYQTAYVKAHYPVEFMAALLSVERHDSDKVAEYIRDARALGIPVLPPDINR 1300

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVL 882
               DFKV    I + L+A+K VG   AR I+E      PF SL DF  R+  + +N+R L
Sbjct: 1301 SGFDFKVVGEEILFGLSAVKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKRAL 1360

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            ESLV AGALD FG  R +LL SL+ + ++A    +   +    +FA  +     +  L +
Sbjct: 1361 ESLVKAGALDAFG-DRARLLASLEPLLRWAAETRERGRSGLVGLFAEVE-----EPPLVE 1414

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----NNIRLA 998
             S  +       E+  LG Y SGHP+  Y P LR++     EE    +RG      + L+
Sbjct: 1415 ASPLDEITMLRYEKEALGIYVSGHPVLRY-PGLREVASCTIEELSEFVRGLPGRPKVLLS 1473

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             MV    +K TR G  +   T S+     E   F
Sbjct: 1474 GMVEEVVRKPTRSGGMMARFTLSDETGALEVVVF 1507


>gi|160899695|ref|YP_001565277.1| DNA polymerase III subunit alpha [Delftia acidovorans SPH-1]
 gi|160365279|gb|ABX36892.1| DNA polymerase III, alpha subunit [Delftia acidovorans SPH-1]
          Length = 1128

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 244/1069 (22%), Positives = 418/1069 (39%), Gaps = 101/1069 (9%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P +  L   S++S L GA S   ++ +  A    A+A+TD  ++  A+   + A    + 
Sbjct: 38   PGYAELHCLSNFSFLRGASSPAQLVQRAKALGYQALALTDECSVAGAVRAFEAARDCEMA 97

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I G +                        +V L     G+  L E +S      + K  
Sbjct: 98   LIHGSEF-----------------AWGSLRVVALARDLNGWGNLCEFISAARARAE-KGR 139

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRA--FFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              +       +  EG           + +             + +       G   ++ +
Sbjct: 140  YLVDADSPWHLLREG------CECIVVPQRAQLLPGDVPAMAEAVQAAVAQLGPGCWLGV 193

Query: 187  QRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            +     D       +  +A    L  VA  +    +       D++ A+     V  +  
Sbjct: 194  ELLLAPDDSLWLQSLQDVAGLLGLSCVACGDVHMHARSRKPLQDLVTALRLGCTV-AECG 252

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              + P+     RS +          L+ T++IA RC F L   +   P+       D ++
Sbjct: 253  FELHPNAERHLRSRLRLGGIYPRAMLDATLQIAARCDFKLSEISYHYPQESVLPGMDARQ 312

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 L      G   R  +G        +  R++L  EL +I+   +  YFL V D ++
Sbjct: 313  T----LAWHTWQGAAGRYPEG------IPKKVRKQLHNELKLISMCGYEMYFLTVHDIVR 362

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+  +I    GRGS A SV  + L IT +DP   +LL  RF++ +R   PD D+DF   
Sbjct: 363  FARSQDIL-CQGRGSAANSVVCFCLGITAVDPTLQTLLIARFISRERSEPPDIDVDFEHA 421

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+ VI+Y+  KYG +R A        + + ALRD G+AL +  + +D + +        
Sbjct: 422  RRETVIQYIYEKYGRDRAALTAVVSCWRTRGALRDAGKALGVDAALIDAMARQHHWFSDA 481

Query: 486  PVSLQAIADDSRFREAR----------------------LADPSVDRLLEISQKLEGLYR 523
                     +                             L+       LE++ +L    R
Sbjct: 482  EDQAAEPEPEPDDPALGWVRSKLLRLARLRERLGDDCPQLSPQRARLWLELALQLRDSPR 541

Query: 524  HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
            H S H  G V+ D PL++LVP+         V Q++   ++   L+K D L L  LT+L+
Sbjct: 542  HLSQHVGGFVLTDGPLTRLVPVEPAAMEGRSVIQWDKDDLDTMNLLKVDVLALGMLTVLR 601

Query: 584  KSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
             SL   A  RG + +L+ IP +D  TY ++    T+G FQ+ES      L  ++P    D
Sbjct: 602  GSLKARAALRGPRWELADIPKEDAATYDMICRADTVGTFQIESRAQMSMLPRLRPRVFYD 661

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIV-----SIHPLIDPMLKETQGVIIYQEQVMQ 697
            ++  V++ RPGPI   +V+   +  + +          P ++  LK T GV I+QEQVMQ
Sbjct: 662  LVVEVAIVRPGPIQGGMVHPYLQARERRRQGGELVLEKPALEKALKRTLGVPIFQEQVMQ 721

Query: 698  IAQLLSGYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            IA + + +S  +AD LRR+M     K  + + +   I G   NG S   A  IF  +  F
Sbjct: 722  IAMIAADFSAGDADELRRSMAAWRRKGGVHRFERPLIDGMLANGYSAEFAQAIFRQMLGF 781

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
             +YGF +SHA ++A+++Y +AW+K H P  FL A +  +        +  QDAR+  +++
Sbjct: 782  GEYGFPESHAYSFAMLAYASAWLKRHEPACFLMALLNAQPMGFYTPSQLIQDARRHGVRV 841

Query: 817  MPPSVNTPCVDFKVG------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
            +P  V     D  +                +   L  +  +  T+   + +  A  PF S
Sbjct: 842  LPVDVRHSDWDCTLEAPHERIAGVELPQPAVRLGLCMVAQLPKTSGERVAQVRAQAPFRS 901

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
             ED   R   ++   + L +             R Q +     +                
Sbjct: 902  TEDLALRARLQRAELQALAAADAL---QGLSGHRRQQMWDAAAL------------QVQP 946

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
             +FA      +      + +          +    G     HPL + +  LR+ G++   
Sbjct: 947  PLFAGVPVHEAP----VQLAAAPEGEEILFDYAATGLSLRRHPLALLRDRLRRHGLRTAL 1002

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            E   T+ G  +R   +V  +Q+  T KG+   ++T  +         +P
Sbjct: 1003 ELRDTLAGMRVRACGIVTVRQRPPTAKGTL--FITLEDETGTVNLVVWP 1049


>gi|296270533|ref|YP_003653165.1| DNA polymerase III subunit alpha [Thermobispora bispora DSM 43833]
 gi|296093320|gb|ADG89272.1| DNA polymerase III, alpha subunit [Thermobispora bispora DSM 43833]
          Length = 1155

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 271/1070 (25%), Positives = 475/1070 (44%), Gaps = 88/1070 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL   S+YS   G    + +  + A      +A+TD + L+  ++  +   A GI PI
Sbjct: 4    FTHLHTASAYSFRYGTAFPDALARRAAEHGMDMLALTDRDGLYGVIKHVRACHARGIAPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G  L +          +G+        IV+L  +  G+  L  LV+  +     +    
Sbjct: 64   AGVDLAL----GPARPERGRGSGADGERIVVLARSG-GWAALCRLVTAAHRR---RGEPY 115

Query: 131  ICLSWLQEIGTE-----GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            +    + E          L +L G  +  + RA      + A   L  ++    D + V 
Sbjct: 116  VTRETVAEHAAGPGGEPLLTVLLG-PASDVGRAVAERRDRQAAALLHAWRSAVPD-VVVE 173

Query: 186  LQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +   +   D    ++++ LA    +P V +N   +L   D++  +VL A      +  + 
Sbjct: 174  VADLYGHRDANTAARMIGLADATGVPAVLSNTVRYLDAADHQVGNVLDAARKRVPLHPRH 233

Query: 245  RPRVTPDHYLKNRSEMVS-----IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                T   YLK+ +EM          D   A     E  R     +     I+P      
Sbjct: 234  IDHPTAHAYLKDSTEMAWVALRICGGDRDRAGRLLAETRRVAERCVLDPVEIVPLLDPVR 293

Query: 300  C----DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                  ++  +    LR++   GL       A      + + R+RL  EL++I R   SG
Sbjct: 294  PRLHLPEVDGDPVRRLRHRCEEGL-------AARGLARSAEARRRLAAELSIIERKGLSG 346

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFL VA      +   I     RGSGAG +  Y + I +++PL   LL ERFL+  R  +
Sbjct: 347  YFLAVAGITDMIRSMGIRCAI-RGSGAGCLVNYLIGIGEVNPLDHGLLMERFLSEGRKGL 405

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD DID    RR +  R + ++YG  R+A +    + +A++A+RDVG A+ +P  ++D +
Sbjct: 406  PDIDIDVESARRLDCYRAILDRYGEARMACVSMVETYRARSAIRDVGAAMGLPPHEIDVI 465

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             K  P+  A  +   A++D    R + L D ++  +  I+++L+GL RH + H  G++IG
Sbjct: 466  VKAFPHIRAGQI-RAALSDLPELRGSGLNDRALQTVFRIAERLDGLPRHIAMHPCGVLIG 524

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
            +  L    P+        P++QF+   +E AGL+K D LG++  + L  ++  + +  G 
Sbjct: 525  NSGLRDRTPVE-PSMLGFPMSQFDKDDVEDAGLLKLDVLGVRMQSALAYAVREVERVDGR 583

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            ++DL  +P DD ET+ L+    TLG FQ+ES G R+ +  ++P  + D+I  +SL+RPGP
Sbjct: 584  RIDLDAVPRDDPETFDLICAGRTLGCFQIESPGQRELVGKLEPRTMHDLIVDISLFRPGP 643

Query: 655  IDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +++ +   Y   ++G       H  +   L+ET GV+I+ EQV+++  +++G  LSEA+ 
Sbjct: 644  VNSDMVTPYLEARHGFRAPSYPHEDLREALRETHGVVIFHEQVLRVIDIMTGCGLSEAER 703

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
             RRA+     E  ++ +  F+  A K G  +     ++  +  F  +GF K+HAAA+A+ 
Sbjct: 704  ARRALDT--PEGREEVRAWFVPLARKKGYGEETIERVWRTIDAFGAFGFCKAHAAAFALP 761

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG- 831
            +YQ+AW+K H+P  F A  +T E       +    +ARQ  +Q++P  VN     + V  
Sbjct: 762  TYQSAWLKRHHPAAFFAGVLTHEPGMYPN-RAIIDEARQCGVQVLPLDVNRSGKTWLVER 820

Query: 832  ----------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                               +    +A+KGV       ++   A +P+ SL DF  R    
Sbjct: 821  TGPPAEGRDGIAAIGRGYGVRVPFSAVKGVSEAEVDRMV---AGRPYTSLADFWERARP- 876

Query: 876  KLNRRVLESLVFAGALDCFG-------------YSRMQLLQSLDNIQKYAQWVEKNRTNK 922
              +R V E +V  G  D                 +R  L+  +  +++ +          
Sbjct: 877  --SRPVAERIVAVGGFDSIYGLRPGEPRWRPGRLTRRDLIAQVGALERAS-----AGATG 929

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
               +       F+++IT  +      +   E E  +LG   S H +  ++ +L  +G+  
Sbjct: 930  QLPM------GFTERITPGELPEMTEAEAVEAELEILGMDVSRHVIGFHRDLLEAIGVTW 983

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             ++ ++   G  + +A   V+ Q    R G RI + T  +     +  FF
Sbjct: 984  AKDLLSRRNGAEVVVAGAKVATQTPAVRSGQRIIFTTLDDSTGPIDLTFF 1033


>gi|309812892|ref|ZP_07706624.1| DNA polymerase III, alpha subunit [Dermacoccus sp. Ellin185]
 gi|308433170|gb|EFP57070.1| DNA polymerase III, alpha subunit [Dermacoccus sp. Ellin185]
          Length = 1248

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 275/1129 (24%), Positives = 474/1129 (41%), Gaps = 122/1129 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL+V SSYSL  G      ++ + A      +A+TD + L+ +++F +   AAG++PI
Sbjct: 3    FTHLRVASSYSLQYGTTPPATLVARAAELGYGRLALTDRDGLYGSVKFVEACSAAGLEPI 62

Query: 71   IGCQLDIDMQDNLK---MTNQGKTPFPTVPSIVLLVSTAE-------GYQRLIELVSRMY 120
            +G  L +  +  L+       G       P + +L   A        G+ +L  LV+  +
Sbjct: 63   LGVDLALAPERVLRARTPAKGGPARDERSPRVTVLARGAASGLAPGLGWAQLCRLVTDAH 122

Query: 121  LLDQGKQSVRICLSWLQ-------EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            L    + +    L  +        E     L +L G     + +A        AE  +  
Sbjct: 123  L-SGERGAPATSLDRVAAHVTHESEPNQPALTVLLG-PDSDVGQALLRGRHAEAEALVRR 180

Query: 174  FKKLFG-DRLYVNLQRHRGYDR-----YRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            ++       L + +  H G           + + +LA    +P V +        ++   
Sbjct: 181  WRTALPHGALALEVACHDGPPEAMASRRHATNLWRLARRCGVPAVLSGWVRHGEVDEAIT 240

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM-------VSIFSDLPEALENTVEIAR- 279
             DVL A      +  +   R +   +L+  ++M            DL  ALE      R 
Sbjct: 241  ADVLDAARRGVALDLRHLDRTSVQGHLRPEAQMLTQAEALAEGLGDLGAALELVGASDRL 300

Query: 280  -RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
             +           +      E + +     +  R            +   A     ++  
Sbjct: 301  AQACVQHPFRDIGIGAVHLPEVEVLGLTGTDPQRVLTERCHAAVNGRYPHASEAKRREVL 360

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RL+ EL+V+  + +  YFL VA      +     V   RGSGAGS+  Y L I+ +DP+
Sbjct: 361  ERLEEELDVVRHLGYPTYFLTVAQVCDLIRDMGGRVA-ARGSGAGSLITYLLGISGVDPI 419

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               LL ERF    R S+PD DID    RR E+   +  ++G ERV  +    + + + A+
Sbjct: 420  EHRLLMERFCTRARASLPDIDIDVESARRTEIYERIMERFGGERVTCVSMMETYRVRHAI 479

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
            RD G AL M  + VD + K  P+  A  V   AI +    R   LA+P +DRL ++ ++L
Sbjct: 480  RDAGAALGMVPADVDVIAKAFPHVAARDV-RHAIEELPELRARGLAEPELDRLFDLVERL 538

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            +GL RH + H  G+++ +  L+Q  PM        P++QF+   +E  GL+K D LG++ 
Sbjct: 539  DGLPRHIALHPCGVILSNAGLAQRTPME-ASWLGFPMSQFDKDDVETLGLLKLDVLGIRM 597

Query: 579  LTLLQKSLDFLAQRG----VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
             + +  ++  + +         D   +PFDD  T+ L+ T  TLG FQ+ES G R+ +  
Sbjct: 598  QSAMAHAVAEIERVEGAVVDLDDPECVPFDDEATFELIRTTRTLGCFQIESPGQRELIGK 657

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
              P   ED+I  +SL+RPGP+ + +   +   + G      +H  + P L+ET GV+++ 
Sbjct: 658  FGPQRFEDLIIDISLFRPGPVKSDMITPFLRARQGWAPPEYLHESLRPALEETMGVVVFH 717

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQV++I    +G +L++AD +RRAMG       +K +  +   A   G +      I+E+
Sbjct: 718  EQVLRIFAQTTGITLAQADEVRRAMGSS--TGQEKIELWWREAAQHRGYTSAERDRIWEV 775

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            LA FA +GF K+HAAA+AV +YQ+AW+KTH+   F+A  +T +     K      D R F
Sbjct: 776  LAAFASFGFCKAHAAAFAVPTYQSAWLKTHHLAAFVAGVLTHDPGMYPKRLIL-ADVRTF 834

Query: 813  NIQIMPPSVNTPCVDFKVG-------DNR---IYYSLAAIKGVGTTTARHIMEASADKPF 862
             + ++   +N    +++V        D+    +      +KG+       ++E    +P+
Sbjct: 835  GVPVLGVDINASRREYRVERVPGEGSDDDHLGLRIGFLDVKGMSEREMTSLVE---GQPY 891

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS------------------------- 897
             SL D   R     L+R V+E L+  GA D    +                         
Sbjct: 892  TSLTDVWRRA---GLSRPVVERLLLVGAFDALHGTGRPGVCGAPTRRDLLLELDDLERLD 948

Query: 898  -----------RMQL----------------------LQSLDNIQKYAQWVE-KNRTNKH 923
                       R ++                        S++  ++ AQ      R    
Sbjct: 949  RHASARLTRGARRRMISSAPGVGASVNADGAAGTVMAFDSVEAARRQAQGRRPHERYETQ 1008

Query: 924  ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
             +  A +     + ++         + +   E  +LG   SGH +  Y P++R +G+   
Sbjct: 1009 GSQLAFDMLDDGEAVS-SGLPEFTPAEKVRAELDILGLDVSGHVMQFYAPLVRALGVSRA 1067

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +  +   G  +  A + V+ Q    R G R+ ++T  +     +A FF
Sbjct: 1068 CDLASLHGGETVWCAGIKVATQTPPVRSGRRVIFLTVDDGTGPADATFF 1116


>gi|170078017|ref|YP_001734655.1| DNA polymerase III subunit alpha [Synechococcus sp. PCC 7002]
 gi|169885686|gb|ACA99399.1| DNA polymerase III alpha subunit [Synechococcus sp. PCC 7002]
          Length = 882

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 288/785 (36%), Positives = 443/785 (56%), Gaps = 42/785 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  +  ++ +    + PAIA+TD   ++ A+E  +      I+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQIKPLIKRAEELKMPAIALTDHGVMYGAIELLKTCRNKRIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ +   D    T + K         V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62  IIGNEMYVINGDIEDKTQRFKK-----YHQVVLAKNTQGYKNLVKLTTISHLKGFQGKGI 116

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L E   EGLIM +    G + +       Q A +    +K +FGD  Y+ 
Sbjct: 117 FARPCINKE-LIEQHHEGLIMTSACLGGEVPQCILKGEYQRAREVAKWYKNIFGDDYYLE 175

Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR    ++V++A   ++ ++ATN+S F+S  D EAHD L+ +  + ++++  
Sbjct: 176 IQDHGSQEDRIVNVEIVKIAQELDIKIIATNDSHFISCYDVEAHDALLCIQTAKLITEDK 235

Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           R R +   YLK+  EM  +F D   P  ++  +      +  ++ +  +    I      
Sbjct: 236 RLRYSGTEYLKSADEMRKLFRDHLDPGIIDQAIANTLEVAAKVEPYKILGEPRIPDYPVP 295

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                ++ L      GL  RL      +      Y++RL++EL ++ +M FS YFL+V D
Sbjct: 296 EGHTADSYLEAVTWDGLLKRLKCKT--QAEVDPTYKERLEYELQMMQQMGFSTYFLVVWD 353

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           ++++A+ N+IPVGPGRGS AGS+ AY+L IT+IDP+  SLLFERFLNP+R SMPD D DF
Sbjct: 354 YVKYARDNDIPVGPGRGSAAGSLVAYSLGITNIDPIHHSLLFERFLNPERKSMPDVDTDF 413

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           C +RRDE+I+YV  KYG +RVAQIITF  + +KA L+DV R L +PY + D + K+IP  
Sbjct: 414 CIERRDEMIKYVTEKYGEDRVAQIITFNRMTSKAVLKDVARVLDIPYGEADMMAKMIPVA 473

Query: 483 PAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
              P  L+ +      +  F+     DP V R ++++ ++EG  +    HAAG+VI   P
Sbjct: 474 RGKPAKLKVMISDDTPEPEFKRRYETDPQVRRWVDMAIRIEGTNKTFGVHAAGVVISSTP 533

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
           L + VP+ R+      +TQ+ M+ +E  GL+K DFLGLK LT ++K+ D + +       
Sbjct: 534 LDEAVPLQRN-NEGAVITQYYMEDVEAMGLLKMDFLGLKNLTTIKKAADLIKEYRHVELD 592

Query: 599 SLIPF--------------------DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                                    D  +T+ L       GIFQLES GM++ ++ ++P 
Sbjct: 593 LDQLPLDERKALEIISKGHAKKLPGDIDKTHDLFGRGDLEGIFQLESDGMKKIVQDLRPS 652

Query: 639 CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            IEDI ++++LYRPGP+D   I ++ NRK+G EKI   H L+  +L ET GV++YQEQ+M
Sbjct: 653 GIEDISSVLALYRPGPLDAGLIPIFINRKHGVEKIEYQHELLQSILNETYGVLVYQEQIM 712

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
           ++AQ L+GYSL EAD+LRRAMGKK  +EM K + +F+ GA+ NG+S+ IA ++F+ + KF
Sbjct: 713 KMAQDLAGYSLGEADLLRRAMGKKKIDEMKKHEAKFVEGAATNGVSEAIARDLFDQMVKF 772

Query: 757 ADYGF 761
           A+Y  
Sbjct: 773 AEYCL 777


>gi|315179595|gb|ADT86509.1| hypothetical DNA polymerase III alpha chain [Vibrio furnissii NCTC
            11218]
          Length = 1023

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 253/1038 (24%), Positives = 426/1038 (41%), Gaps = 88/1038 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA--GIQ 68
            +  L   S++S L GA     ++ +    +  AIAITD  +L   +           GI+
Sbjct: 3    YAELFCQSNFSFLTGASHPEELVIQADFLRYHAIAITDECSLAGVVRAHTAIKQQQLGIK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G    ++ +                   VLL    + Y  L  +++      +  Q 
Sbjct: 63   QIVGSLFQLNDE----------------CRFVLLCPNQDAYAELCRIITNARRRSEKGQY 106

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                   +       L++            +  + ++  +       +    RL++ +QR
Sbjct: 107  KLSEWDVMSARH--CLVI------------WLPSHTERDKHWGQWLTQHHPHRLWLGVQR 152

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    D         LA   +LP+ A    L  +        +L A+     V       
Sbjct: 153  HLGPQDNAYLDHCRTLAQAFDLPITACGGVLMHNATRLPLQHILTAIQRGQPVEHIQAHL 212

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+           +S     PE L+ +V IA RC F L       P  +  +        
Sbjct: 213  VSNTERALRSQAKLSKL-FPPEWLQESVRIAERCEFQLGSLHYRYPSELVPD----DHTP 267

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     G  +R   G  A      D    ++ EL +I  +    YFL + D + +A
Sbjct: 268  MAYLRQLVEQGKALRFPHGVPA------DINATIEKELALIDELDLPYYFLTIHDIVMFA 321

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+N I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +RR
Sbjct: 322  KRNGILY-QGRGSAANSVVCYCLEITSVDPRQISVLFERFISKERQEPPDIDVDFEHERR 380

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD---RLCKLIPNDPA 484
            +EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  +Q+D   +          
Sbjct: 381  EEVIQYLYRKYGRERAALAATVISYRFKSAVRDVGKALGIHEAQLDFFIKNVNRRDRGLG 440

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                L  +  + +  + +     V+ L+       G  RH S H  G VI   PL +LVP
Sbjct: 441  WQAQLTELGLEPQSLKGQQFIELVNELI-------GFPRHLSQHVGGFVISSGPLYELVP 493

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA---QRGVKVDLSLI 601
            +      +  + Q++   +E  GL K D L L  LT ++K    +    QR + +     
Sbjct: 494  VENAAMPERTIIQWDKDDLESLGLFKVDVLALGMLTAIRKCFTCIEQQYQRKLSIADITR 553

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
              DD   Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI   +V+
Sbjct: 554  LQDDANVYGMIQRADTIGVFQIESRAQMSMLPRLKPRCYYDLVIQIAIVRPGPIQGDMVH 613

Query: 662  N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                R++G E +      ++ +L+ T GV I+QEQV++IA + +G+S  EAD LRRAM  
Sbjct: 614  PFLKRRDGIEDVTYPSKEVEAVLQRTMGVPIFQEQVIKIAMVAAGFSGGEADQLRRAMAS 673

Query: 720  KIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
              K     K + + I+G    G     A  I++ +  F +YGF +SH+A++AV++Y +AW
Sbjct: 674  WKKTGELAKFRTKLINGMLARGYELAFAERIYDQICGFGEYGFPESHSASFAVLAYCSAW 733

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----R 834
            +K +YP  F  A +           +  QDA++  I+++P  VN    D +V ++     
Sbjct: 734  LKYYYPEAFYTALLNSLPMGFYSASQLVQDAQRHGIKVLPVCVNASQWDHQVVEHEQQQA 793

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +   L  +KG     A+ ++ A   + F              L ++ +ESL  A AL  F
Sbjct: 794  MRLGLRQVKGFSEQGAQLLLNARPAQGFHHPAQLKR----CGLTQKDMESLASANALHSF 849

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
             ++R     S+ +                  +F        D+  L  +   +       
Sbjct: 850  AHNRYATRWSMMDSLSD------------LPLFEQL-----DEAALALYQQPSDMDTLIE 892

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +   LG   + HP+ +              +       + + +A +V  +Q   T  G  
Sbjct: 893  DYASLGLSLTQHPVTLLDTAGELGSFSRMRDLAQLPHKSLVTVAGIVTGRQSPGTAAG-- 950

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + + T  +         +
Sbjct: 951  VTFFTLEDDTGNINVVVW 968


>gi|284928809|ref|YP_003421331.1| DNA-directed DNA polymerase III PolC [cyanobacterium UCYN-A]
 gi|284809268|gb|ADB94973.1| DNA-directed DNA polymerase III PolC [cyanobacterium UCYN-A]
          Length = 873

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 298/871 (34%), Positives = 474/871 (54%), Gaps = 49/871 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L VHS+YSLL+GA  L+ ++D+      PAIA+TD   ++ A+E  +      I+P
Sbjct: 2   SFVGLHVHSAYSLLDGASQLDALVDRAIQLGMPAIALTDHGVMYGAIELIKVCKNKNIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ +   D  +     K         V+L    +GY+ L +L +  +L   QGK  
Sbjct: 62  IIGNEMYVINGDITEKKRYKK------YHQVVLAKNTQGYKNLSKLTTISHLEGVQGKGI 115

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L++   +GLI+ +    G I +       Q A++    +KK+F +  Y+ 
Sbjct: 116 FSRPCINKELLEKYH-DGLIVTSACLGGEIPQKILSGDFQGAKEVAQWYKKIFANDFYLE 174

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR     + ++A    + ++ATN+S F S  D EAHD L+ +  + ++S + 
Sbjct: 175 IQDHGSTEDRIVNVSISKIAQDLNIKIIATNDSHFTSCYDVEAHDALLCIQTAKLISDEK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           R R +   YLK+  EM  +F D    + ++  +      +  +  +  +    I      
Sbjct: 235 RLRYSGTEYLKSIDEMKLLFRDHLDDDLIKEAINNTLEVANKIDTYHILGEPRIPDFPVP 294

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
           I  + ++ +R  ++ GL  RL   +I     +++Y+QRL++EL+++ +M FS YFL+V D
Sbjct: 295 IGHDLDSYVREISLQGLLERLNCKSI--NQVSEEYQQRLEYELDMLEKMGFSSYFLVVWD 352

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           +I++A+ N IPVGPGRGS AGS+ AY+L IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 353 YIKYARDNEIPVGPGRGSAAGSLVAYSLKITNIDPIYHGLLFERFLNPERKSMPDVDTDF 412

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           C +RRDE+I+YV  KYG + VAQIITF  + +KA L+DV R L +PYS+ D++ K+IP  
Sbjct: 413 CIERRDEMIKYVTKKYGEKNVAQIITFNRMTSKAVLKDVARVLDIPYSESDKMTKMIPVT 472

Query: 483 PAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
              P  L+ +  +      F++    DP V R L+++ ++EG  +    HAAG+VI    
Sbjct: 473 RGKPTKLKVMVSNETPSPEFKDRYDQDPLVRRWLDMAIRIEGTNKTFGVHAAGVVISSES 532

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-- 596
           L ++VP+ ++      +TQ+ M+ +E  GL+K DFLGL+ LT +Q++ D + +       
Sbjct: 533 LDEIVPLQKN-NDGAVITQYYMEDLESLGLLKMDFLGLRNLTTIQRAADLIEKNRNIKLD 591

Query: 597 ------------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                              +S +P D  +T+ LL      GIFQLESSGM+Q ++ ++P 
Sbjct: 592 VEQLPTDERKALKELEQGKISKLPTDIEKTHKLLGDGELEGIFQLESSGMKQIVKDLKPS 651

Query: 639 CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            IEDI ++++LYRPGP+D   I  + NRK+GKE I     L++P+LKET  V++YQEQ+M
Sbjct: 652 GIEDISSILALYRPGPLDAGLIPKFINRKHGKEAIKYEDKLLEPILKETYAVLVYQEQIM 711

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            +AQ L+GYSL EAD+LRRAMGKK   EM+K ++ FI G+  NG+S+++A N+F+ + KF
Sbjct: 712 TMAQQLAGYSLGEADLLRRAMGKKKASEMEKHQKNFIDGSLNNGVSRSVAENLFQQMVKF 771

Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC-----QDARQ 811
           A+Y  +                      ++    ++  +     +          Q+  +
Sbjct: 772 AEYCLSYDTKVLTVEYGLLPIGRIVQENIKCKVYTINNQGVIYTQPIAQWHDRGKQEIFE 831

Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
           + +        T    F   DN +   +  I
Sbjct: 832 YCLDDETVIQATKDHKFMTTDN-VMMPIDQI 861


>gi|326781155|ref|ZP_08240420.1| DNA polymerase III, alpha subunit [Streptomyces cf. griseus
            XylebKG-1]
 gi|326661488|gb|EGE46334.1| DNA polymerase III, alpha subunit [Streptomyces cf. griseus
            XylebKG-1]
          Length = 1155

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 260/1058 (24%), Positives = 447/1058 (42%), Gaps = 60/1058 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL V S +S   GA    +++ + A     A+A+TD +++  A+  ++   +AG++PI
Sbjct: 4    FTHLHVASGFSARYGASHPQDLVRRAAELGMGALALTDRDSVTGAVRHAKACLSAGVRPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPS-------IVLLVSTAEGYQRLIELVSRMYLLD 123
             G  L +   D  + +++ +TP             I LL  +  G+ R+  LVS  +   
Sbjct: 64   FGVDLAVPAFDPARASHRPRTPVRGGGHVTEPRLRITLLAGSVHGWARICRLVSAAH-AH 122

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-L 182
                        L+E   E ++ + G +S P+ RA       +AEK L+ ++++ G+  L
Sbjct: 123  PVDGFPVASWEALREGLGEDVVAILGPTSEPV-RALAAGRPDIAEKLLVPWREIAGEGLL 181

Query: 183  YVNLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +    +             +  + L     +P V TN   +   E +   DVL A    
Sbjct: 182  RLEAVAYGLSGLGAGSVRLAAHTLALGDRLGVPTVLTNAVRYERREQHRLADVLDAARLL 241

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI------ 291
              V ++        +                 A        R                  
Sbjct: 242  RPVPRRGPLDPGERYLKSGAEMAEVAERVAAAASAPAGRGRRLIEETAATAEQCAVDPVR 301

Query: 292  -----LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
                    F E           + +R           A+G             RL +EL 
Sbjct: 302  DLGLGRAHFPEPHVVGAGTRPGDGMRLLRQRSEAGMTARGLDRDV----RAMDRLGYELG 357

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI R+ +  YFL VA  +   +   I V   RGSGAGS+  ++L I   DPL   LLFER
Sbjct: 358  VIERLGYEAYFLAVAQVVADVRSMGIRVA-ARGSGAGSMVNHSLFIATADPLSHRLLFER 416

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL+  R ++PD D+D   DRR EV   +  ++G ERVA      + +A+ ALRD G AL 
Sbjct: 417  FLSERRTALPDIDLDVESDRRLEVYDRIFERFGSERVAVTGMPETYRARHALRDTGLALG 476

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
            +    VDR+ K  P+  A  +   A+++    R+          L E+++ L+ L R  +
Sbjct: 477  IRPQTVDRIAKSFPHIRACDI-GSALSELPELRQLAAEADQYGPLWELAEGLDALPRGFA 535

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             H  G+++ D  L   +P+        P  Q +   +E  GL+K D LG++  + +  ++
Sbjct: 536  MHPCGVILSDASLLGRLPVQPAPGGAYPTVQADKHDVEDLGLLKLDVLGVRMQSAMAHAV 595

Query: 587  DFLAQRGVKVD----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
              + +   +         +   D  T+ L+ +   LG FQLESSG +  +  +QP  ++D
Sbjct: 596  AEIRRTTGRHIDLDSPDHVDLADEPTFELIRSTKVLGCFQLESSGQQDLIARLQPRHMQD 655

Query: 643  IIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            +IA +SL+RPGP+   +   +   ++G E+    HP + P++ +T GV+I+ EQ+M I  
Sbjct: 656  VIADISLFRPGPVAGGMPARFIAARHGIEEPRYPHPDLVPIMDDTYGVVIWHEQIMMILA 715

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
             ++G   + ADV RRA+    +    +   R    A + G +  +   +++++ +F  YG
Sbjct: 716  TMTGCDRAAADVARRALADAGRLPKVEVWFRRC--AGERGYTPDVIDEVWDIVKEFGAYG 773

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            F ++HA A+AV + Q+AW+KTHYP  F A  +  +       +   QDA+QF + I+P  
Sbjct: 774  FCRAHAVAFAVPAVQSAWLKTHYPAAFFAGLLQHDPGM-WAPRVLVQDAKQFGVAILPVD 832

Query: 821  VNT----PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            VNT      V+       +  +L+ ++G+    +  I    A +P+  L+D   R     
Sbjct: 833  VNTSRGAHSVEPTADGWGVRLALSTVRGITEAESARI---EAGQPYTGLQDLWLRARPSL 889

Query: 877  LNRRVLESLVFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
                + + L+  GAL     G +R  LL     + + A+   +   +    +     G  
Sbjct: 890  ---PLAQRLIRIGALAPLQGGLTRRDLLLQATELHRSARN--RTAIDGQLPL-----GDE 939

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
            +                   E  VL    S H L+ +  +L ++G        A  RG  
Sbjct: 940  THAGEPAGLPEMTGRDVMSAEIDVLSIDVSRHLLEHHHRLLAELGATDARHLQAMRRGEQ 999

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +A +  S Q      G R+ +VT  + +   +  FF
Sbjct: 1000 VLVAGVRASTQTPPIPSGKRVIFVTLEDGSGLVDLAFF 1037


>gi|156975141|ref|YP_001446048.1| DNA polymerase III alpha chain [Vibrio harveyi ATCC BAA-1116]
 gi|171769810|sp|A7MUN4|DNAE2_VIBHB RecName: Full=Error-prone DNA polymerase
 gi|156526735|gb|ABU71821.1| hypothetical protein VIBHAR_02868 [Vibrio harveyi ATCC BAA-1116]
          Length = 1024

 Score =  499 bits (1284), Expect = e-138,   Method: Composition-based stats.
 Identities = 244/1037 (23%), Positives = 424/1037 (40%), Gaps = 83/1037 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA--CAAGI 67
            S+  L   S++S L GA     ++ + A  +  AIAITD  ++   ++           I
Sbjct: 2    SYAELFCQSNFSFLTGASHAEELVLQAAFYRYQAIAITDECSVAGVVKAHATIEQHKLDI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+G    ++ +                  +VLL    + Y  L  +++      + K 
Sbjct: 62   KQIVGSMFWLNDE----------------CQVVLLCPCRKAYAELCRIITNARRRSE-KG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            S ++    L  +    ++ L                 +         ++    RL+V +Q
Sbjct: 105  SYQLSEWDLMSVRHCFVLWLP-------------THQESDHYWGRWLQQHHAHRLWVAIQ 151

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH  G D    +    LA   +LP+ A    L  + E      VL AV H   V +    
Sbjct: 152  RHLGGDDDAYTTHCELLANEFQLPIAACGGVLMHAVERLPLQHVLTAVKHGCSVDKLGFS 211

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R++           +S             E +   + + +     L      E       
Sbjct: 212  RLSNAERALRPLNKLSRIYKSKWL-----EESTHIADLCEFKLSDLKYEYPTELIPNGYT 266

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR     G ++R  +G         D  Q ++ EL +I  +++  YFL + D + +
Sbjct: 267  PTSYLRMLVERGKKLRFPEG------IPADIHQTIENELALIEELEYHYYFLTIHDIVMF 320

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+  I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +R
Sbjct: 321  AKQQGILY-QGRGSAANSVVCYCLEITAVDPRQISVLFERFISREREEPPDIDVDFEHER 379

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG ER A   T  S + K+A+R+VG+AL +  +Q+D   K +       
Sbjct: 380  REEVIQYIYKKYGRERAALAATVISYRFKSAVREVGKALGIEETQLDFFIKNVNRRDRTQ 439

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                 I +    +   L      +L+          RH S H  G VI   PL +LVP+ 
Sbjct: 440  GWQAQIIELG-LQPESLKGQQFIQLVNEITGF---PRHLSQHVGGFVISSGPLYELVPVE 495

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---VDLSLIPF 603
                 D  + Q++   +E   L+K D L L  L  ++K    + +   +   +       
Sbjct: 496  NASMEDRTIIQWDKDDLESLKLLKVDVLALGMLNAIRKCFQLVEKHHQRSLSIAEITRLQ 555

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662
            DD   Y ++    T+G+FQ+ES      L  ++P    D++  +++ RPGPI   +V+  
Sbjct: 556  DDPHVYRMIQKADTVGVFQIESRAQMSMLPRLKPARYYDLVVQIAIARPGPIQGDMVHPF 615

Query: 663  -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R+NG+E I      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM    
Sbjct: 616  LKRRNGEEPISYPSEEVKSVLERTMGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMAAWK 675

Query: 722  KEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            K     K K + I G  + G     A  IF+ +  F +YGF +SH+A++AV++Y +AW+K
Sbjct: 676  KNGDLAKFKPKLIDGMRERGYDLEFAERIFDQICGFGEYGFPESHSASFAVLAYCSAWLK 735

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RI 835
             +YP EF  A +  +        +  QDAR+  ++++P  +N       +         +
Sbjct: 736  FYYPAEFYTALLNSQPMGFYSPSQLIQDARRHGVEVLPVCINHSSYQHHLVQRPNGRLGV 795

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                  +KG    +A  ++E      + ++++    V     NRR +E L  A A     
Sbjct: 796  QLGFRLVKGFNQESASRLVERRPSTGYRAIQE----VKQILRNRRDIELLASADAFQILS 851

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R     +  +                  +F H +   ++          +       +
Sbjct: 852  GNRYNARWAAMDSLSD------------LPLFNHIEEPMANYQAQP-----SEYENLIED 894

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G   S HP+ + +   +       ++ V     + + +  +V  +Q   T  G  +
Sbjct: 895  YASTGLSLSRHPITLLEEAGKLPRFTRMKQLVEKEHNSLVTVIGVVTGRQSPGTAAG--V 952

Query: 1016 GWVTFSEPAKEYEANFF 1032
             + T  +         +
Sbjct: 953  TFFTLEDDTGNINVVVW 969


>gi|260767892|ref|ZP_05876826.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
 gi|260615922|gb|EEX41107.1| DNA polymerase III alpha subunit [Vibrio furnissii CIP 102972]
          Length = 1023

 Score =  499 bits (1284), Expect = e-138,   Method: Composition-based stats.
 Identities = 250/1038 (24%), Positives = 421/1038 (40%), Gaps = 88/1038 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA--GIQ 68
            +  L   S++S L GA     ++ +    +  AIAITD  +L   +           GI+
Sbjct: 3    YAELFCQSNFSFLTGASHPEELVIQADFLRYHAIAITDECSLAGVVRAHTTIKQQQLGIK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G    ++ +                   VLL    + Y  L  +++      +  Q 
Sbjct: 63   QIVGSLFQLNDE----------------CRFVLLCPNQDAYAELCRIITNARRRSEKGQY 106

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                   +       L++            +  + ++  +       +    RL++ +QR
Sbjct: 107  KLSEWDVMSARH--CLVI------------WLPSHTERDKHWGQWLTQHHPHRLWLGVQR 152

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    D         LA   +LP+ A    L  +        +L A+     V       
Sbjct: 153  HLGPQDNAYLDHCRTLAQAFDLPITACGGVLMHNATRLPLQHILTAIQRGQPVEHIQAHL 212

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            V+           +S     PE L+ +V IA RC F L       P  +  +        
Sbjct: 213  VSNTERALRSQAKLSKL-FPPEWLQESVRIAERCEFQLGSLHYRYPSELVPD----DHTP 267

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     G  +R   G  A      D    ++ EL +I  +    YFL + D + +A
Sbjct: 268  MAYLRQLVEQGKALRFPHGVPA------DINATIEKELTLIDELDLPYYFLTIHDIVMFA 321

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K++ I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +RR
Sbjct: 322  KRSGILY-QGRGSAANSVVCYCLEITSVDPRQISVLFERFISKERQEPPDIDVDFEHERR 380

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD---RLCKLIPNDPA 484
            +EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  +Q+D   +          
Sbjct: 381  EEVIQYLYRKYGRERAALAATVISYRFKSAVRDVGKALGIHEAQLDFFIKNVNRRDRGLG 440

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                L  +  + +  + +     V+ L+       G  RH S H  G VI   PL +LVP
Sbjct: 441  WQAQLTELGLEPQSLKGQQFIELVNELI-------GFPRHLSQHVGGFVISSGPLYELVP 493

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---VDLSLI 601
            +      +  + Q++   +E  GL K D L L  LT ++K    + Q   +   +     
Sbjct: 494  VENAAMPERTIIQWDKDDLESLGLFKVDVLALGMLTAIRKCFTCIEQHHQRKLSIADITR 553

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
              DD   Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI   +V+
Sbjct: 554  LQDDANVYGMIQRADTIGVFQIESRAQMSMLPRLKPRCYYDLVIQIAIVRPGPIQGDMVH 613

Query: 662  N--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                R++G E +      ++ +L+ T GV I+QEQV++IA + +G+S  EAD LRRAM  
Sbjct: 614  PFLKRRDGIEDVTYPSKEVEAVLQRTMGVPIFQEQVIKIAMVAAGFSGGEADQLRRAMAS 673

Query: 720  KIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
              K     K + + I+G    G     A  I++ +  F +YGF +SH+A++AV++Y +AW
Sbjct: 674  WKKTGELAKFRTKLINGMLARGYELAFAERIYDQICGFGEYGFPESHSASFAVLAYCSAW 733

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----R 834
            +K +YP  F  A +           +  QDA++  I+++P  VN    D +V ++     
Sbjct: 734  LKYYYPEAFYTALLNSLPMGFYSASQLVQDAQRHGIKVLPVCVNASQWDHQVVEHEQQQA 793

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +   L  +KG     AR ++ A   + F              L ++ +ESL  A AL  F
Sbjct: 794  MRLGLRQVKGFSEQGARLLLNARPAQGFHHPAQLKR----CGLTQKDMESLASANALHSF 849

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
             ++R     S+ +                  +F                   +       
Sbjct: 850  AHNRYATRWSMMDSLSD------------LPLFEQLDEAAPALYQQP-----SDMDTLIE 892

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +   LG   + HP+ +              +       + + +A +V  +Q   T  G  
Sbjct: 893  DYASLGLSLTQHPVTLLDTAGELGRFSRMRDLAQLPHKSLVTVAGIVTGRQSPGTAAG-- 950

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + + T  +         +
Sbjct: 951  VTFFTLEDDTGNINVVVW 968


>gi|172038990|ref|YP_001805491.1| DNA polymerase III subunit alpha [Cyanothece sp. ATCC 51142]
 gi|171700444|gb|ACB53425.1| DNA polymerase III alpha subunit, N-terminal extein/intein
           [Cyanothece sp. ATCC 51142]
          Length = 874

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 300/787 (38%), Positives = 453/787 (57%), Gaps = 44/787 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  LN ++D+    + PAIA+TD   ++ A+E  +     G++P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLNALIDRAVELEMPAIALTDHGVMYGAIELIKVCRNKGVKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ +   D  +     K         V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62  IIGNEMYVINGDIEEKKKYKKY------HQVVLAKNTQGYKNLVKLTTISHLKGMQGKGI 115

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L++   EGLI+ +    G I +       + A+     +KKLF +  Y+ 
Sbjct: 116 FARPCINKELLEQYH-EGLIVTSACLGGEIPQRILAGDIKEAKAVAKWYKKLFKEDFYLE 174

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR     + ++A   ++ +VATN+S F+S  D EAHD L+ +    +++ + 
Sbjct: 175 IQDHGSVEDRIVNVAIAKIARDLDIKIVATNDSHFISCYDVEAHDALLCIQTGKLITDEK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECD- 301
           R R +   YLK+  EM  +F D    + +E  V      +  ++ +  IL          
Sbjct: 235 RLRYSGTEYLKSADEMRLLFRDHLSDDVIEEAVNNTLEVAEKIEPYKDILGEPRIPNYPV 294

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                 ++ +   A  GL  RL     ++     +YR+RL++EL ++ +M FS YFL+V 
Sbjct: 295 PAGHNPDSYVEEIAWQGLLERLKC--RSRSEIPDEYRERLEYELKMLQQMGFSTYFLVVW 352

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           D+I++A+ N+IPVGPGRGS AGS+ AY L IT+IDP+   LLFERFLNP+R SMPD D D
Sbjct: 353 DYIKYARDNHIPVGPGRGSAAGSLVAYCLKITNIDPVHHGLLFERFLNPERKSMPDVDTD 412

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC +RRDE+I+YV  KYG   VAQIITF  + +KA L+DV R L +PY++ D++ K+IP 
Sbjct: 413 FCIERRDEMIKYVTRKYGEANVAQIITFNRMTSKAVLKDVARVLDIPYAESDKMTKMIPV 472

Query: 482 DPAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
               P  L+ +  D      F+E    DP V R ++++ ++EG  +    HAAG+VI   
Sbjct: 473 SRGKPTKLKVMVSDETPTPEFKERYENDPLVRRWVDMAIRIEGTNKTFGVHAAGVVISSE 532

Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
           PL Q+VP+ ++      +TQ+ M+ +E  GL+K DFLGL+ LT +Q++ D + Q      
Sbjct: 533 PLDQVVPLQKN-NDGAVITQYYMEDLESLGLLKMDFLGLRNLTTIQRTADLIKQNQGVTL 591

Query: 598 LSLI--------------------PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
                                   P D  +T+ LL      GIFQLESSGM+Q ++ ++P
Sbjct: 592 DLDQLPLDERKALEIIAKGTAKKLPPDVEKTHKLLEKGDLEGIFQLESSGMKQIVKDLKP 651

Query: 638 DCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
             IEDI ++++LYRPGP+D   I  + NRK+G+E+I+  H L++P+LKET  V++YQEQ+
Sbjct: 652 SGIEDISSILALYRPGPLDAGLIPKFINRKHGREEIIYQHKLLEPILKETYAVLVYQEQI 711

Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
           M++AQ L+GYSL EAD+LRRAMGKK   EM K +E FI GA+KNG+S+ IA ++FE + K
Sbjct: 712 MKMAQDLAGYSLGEADLLRRAMGKKKIAEMTKHREIFIDGATKNGVSQAIAEDLFEQMIK 771

Query: 756 FADYGFN 762
           FA+Y  +
Sbjct: 772 FAEYCLS 778


>gi|76579902|gb|ABA49377.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia pseudomallei
            1710b]
          Length = 1253

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 314/758 (41%), Positives = 462/758 (60%), Gaps = 24/758 (3%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
              +   P FVHL+VHS +S+ +G + L++I+   A D Q A+A+TD  N F  + F ++A
Sbjct: 511  APMSD-PRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEA 569

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              AGI+PI GC + I   D+                ++LLV    GY  L EL+S+ +L 
Sbjct: 570  RDAGIKPIAGCDVWITNHDDRDKP----------SRLLLLVKDKRGYLNLCELLSKAWLT 619

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +Q +    +  SWL+    EGL+ L+G   G I  A    +   A +    + ++F    
Sbjct: 620  NQYRGRAELDASWLEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGF 679

Query: 183  YVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            Y+ LQR+          Q V +A   +LP+VAT+   +++ +D+ AH+  + ++   +++
Sbjct: 680  YIELQRYGQPGAEAYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILA 739

Query: 242  QKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               R  R T + + + + +M ++F+DLP AL NTVEIA+RC+  L++  P LPRF   + 
Sbjct: 740  NPRRQKRFTTEQFFRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDG 799

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ---DYRQRLDFELNVIARMKFSGYF 357
              +    ++ L   +  GL+ RL Q    +         Y QRLDFE   I +M F GYF
Sbjct: 800  MSL----DDYLVQLSQEGLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYF 855

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            LIVADFI WAK N +PVGPGRGSGAGS+ AY+L ITD+DPLR++LLFERFLNP+R+SMPD
Sbjct: 856  LIVADFINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPD 915

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            FDIDFCQ  RD VI+YV+ KYG + V+QI TFG++ AKAA+RD+GR L + Y   D + K
Sbjct: 916  FDIDFCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAK 975

Query: 478  LIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            LIP  P   V++  A+ ++   +E    +  V +LL+++Q++EGL R+   HA G++I  
Sbjct: 976  LIPFKPGKHVTIADAMKEEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAP 1035

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RG 593
              L+   P+Y        V+Q++   +E  GL+KFDFLGL TLT+L  +  ++ +     
Sbjct: 1036 GKLTDFCPLYTQGDEGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSK 1095

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ +P DD  ++ +L    T+ +FQLES GM+  L+  QPD  EDIIALVSLYRPG
Sbjct: 1096 ENWSLAQVPLDDPTSFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPG 1155

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  +  RK+G+EK+    P ++P+LKET G+++YQEQVMQ+AQ++ GYSL  AD+L
Sbjct: 1156 PMDLIPSFCARKHGREKVDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLL 1215

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            RRAMGKK  EEM K +E F  GA+KNG+++  +  IF+
Sbjct: 1216 RRAMGKKKPEEMAKHREIFAEGAAKNGLTREKSDEIFD 1253


>gi|320449185|ref|YP_004201281.1| DNA polymerase III subunit alpha [Thermus scotoductus SA-01]
 gi|320149354|gb|ADW20732.1| DNA polymerase III, subunit alpha [Thermus scotoductus SA-01]
          Length = 1646

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 329/817 (40%), Positives = 464/817 (56%), Gaps = 70/817 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIA----ADQQPAIAITDTNNLFSALEFSQKACAAG 66
           F HL  H+ +SLL+GA  L+++L+ +      D  PA+A+TD  NLF A+EF +KA A G
Sbjct: 6   FAHLHQHTQFSLLDGAAKLSDLLEWVKTVSPED--PALAMTDHGNLFGAVEFYKKATAMG 63

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           I+PIIG +  +  +       +GK        + LL    +GYQ L+ L SR YL +   
Sbjct: 64  IKPIIGYEAYVAAESRFDR-KRGKGLDGGYFHLTLLARDFKGYQNLVRLASRAYL-EGFY 121

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
           +  RI    L+E   EGLI L+G     I +    +   +AE RL  +  +FGDR ++ +
Sbjct: 122 EKPRIDREILRE-HAEGLIALSGCLGAEIPQFILQDRLDLAEARLNEYLSIFGDRFFIEI 180

Query: 187 QRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
           Q H   ++ + +Q + + A  + L +VATN+  ++ +ED  AH+VL+A+   + +   +R
Sbjct: 181 QNHGLPEQRKVNQVLREFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKSTLDDPER 240

Query: 246 PRVTPD-HYLKNRSEMVSIFSDLPE---ALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            R   D  Y+K   EM ++  +        +NTVEIAR C   L +   ++ R I +   
Sbjct: 241 WRFPCDEFYVKTPEEMRAMLPEEEWGDEPFDNTVEIARMCEVDLPIGDKMVYR-IPRFPL 299

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA--------------------------- 334
              + E   LR     GL  R         Y                             
Sbjct: 300 PEGRTEAQYLRELTFKGLLSRYPDRITEGFYREVFRLLGKIPPHGDGEALAEALAQVEGK 359

Query: 335 --------------------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
                               +    R  +EL+VI RM F GYFLIV D+I WA++N I V
Sbjct: 360 AWEALLPKLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWARRNGISV 419

Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
           GPGRGS AGS+ AYA+ IT+IDPLRF LLFERFLNP+R+SMPD D DF    RD VI+YV
Sbjct: 420 GPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYV 479

Query: 435 QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQAIA 493
           + +YG E+VAQI TFGSL +KAAL+DV R   +P+ + + L KLIP     P    +AI 
Sbjct: 480 RGRYGEEKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKPLAEAIE 539

Query: 494 DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                R     DP V  ++E++ +LEGL RHAS HAAG+VI   PL+ LVP+ RD +   
Sbjct: 540 LVPELRAEMEKDPRVREVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRD-QEGR 598

Query: 554 PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLL 612
           PVTQ++M  +E  GL+K DFLGL+TLT L ++   + + +GV++D   +P DD +T+ LL
Sbjct: 599 PVTQYDMGAVEALGLLKMDFLGLRTLTFLDEAKKIVKESKGVELDYDRLPLDDPKTFALL 658

Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
               T G+FQLES GM   + G++P  +EDIIALVSLYRPGP+++I  Y  R +G+E + 
Sbjct: 659 ARGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRHHGQEPVS 718

Query: 673 S---IHPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
                H    + P+L+ET G+ +YQEQ+MQIA  ++GYSL EAD+LRRAMGKK  EEM K
Sbjct: 719 YVEFPHAERYLRPILEETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKKVEEMQK 778

Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            +ERF+ GA + G+ +  A  +F++L  FA+YGFNK 
Sbjct: 779 HRERFVRGARERGVPEEEANRLFDMLEAFANYGFNKC 815



 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 103/274 (37%), Positives = 149/274 (54%), Gaps = 12/274 (4%)

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAAAY+++SYQTA++K HYPVEF+AA +T+E  + +K+ ++ +DAR   I+++PP +N 
Sbjct: 1240 SHAAAYSLLSYQTAYVKAHYPVEFMAALLTVERHDSDKVAEYIRDARAMGIEVLPPDINR 1299

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVL 882
               DFKV    I + L+A+K VG   A+ I+       PF SL DF  R+D K +N+R L
Sbjct: 1300 SGFDFKVVGEEILFGLSAVKNVGEGAAQAILAERERRGPFKSLGDFLKRLDEKVVNKRTL 1359

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            ESL+ AGA D FG  R +LL SLD + ++A    +   +    +FA  +     +  L +
Sbjct: 1360 ESLIKAGAFDAFG-DRARLLASLDPLLRWAAESRERERSGMMGLFAEVE-----EPPLAE 1413

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG----NNIRLA 998
                +   R   E+  LG Y SGHP+  Y P LR++     EE    IRG      + LA
Sbjct: 1414 ALPLDEITRLRYEKEALGIYVSGHPVLRY-PGLREVASCTLEELPDFIRGLPPRPRVLLA 1472

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             MV    +K TR G  +   T S+     E   F
Sbjct: 1473 GMVEEVARKPTRSGGMMARFTLSDETGALEVVVF 1506


>gi|170696620|ref|ZP_02887740.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M]
 gi|170138486|gb|EDT06694.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M]
          Length = 1197

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 249/1144 (21%), Positives = 434/1144 (37%), Gaps = 165/1144 (14%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
               P++  L   +++S L GA   + ++++       A+AITD  +L   +         
Sbjct: 16   SNLPAYAELHCLTNFSFLRGASHPHELVERAMLHGYSALAITDECSLAGVVRAHTALKEI 75

Query: 66   G-------------------------------------------IQP----IIGCQLDID 78
            G                                           ++P    IIG +L++ 
Sbjct: 76   GEEQNRLRKEIEDKLKAARPPEAGPLPKEVLDEAIRQEALENEVLKPLPQLIIGSELNLT 135

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
                               ++V L +   GY  L EL++      + K S R+  S   +
Sbjct: 136  D-----------AAGEPFCTLVALAANRNGYGNLSELITLGRSRAE-KGSYRLSPSDFTD 183

Query: 139  --IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRY 195
                 E L  L       + +                      +R ++ L+    G D  
Sbjct: 184  SLPHLEHLRALPDCVLLLVPQRTAT--LSHILHCAHWLASFAANRAWIALELWQTGSDDL 241

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
            +   +  ++    LPLVA    L  +       D + A+  +T +S      +  +    
Sbjct: 242  QIDALRMISQASGLPLVAAGGVLMHTRSRKPLQDTMTAIGLNTPLS-ACGHALEANAERH 300

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
             R+ +        + LE T+ IA  C F L       P  +    +       + LR   
Sbjct: 301  MRTRVRLSKLYPRDTLEETLNIAALCRFSLDELKYEYPEELVPAGE----SPSSYLRKLV 356

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
            +AG   R   G   K         +++ EL++IA +K+  YFL V D + +A+  NI   
Sbjct: 357  MAGAAERWPNGLDLKRI------DQIEKELSLIADLKYEKYFLTVHDIVSFARSRNIL-C 409

Query: 376  PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
             GRGS A S+  Y L +T+IDP+  ++L ERF++  R   PD D+DF   RR+EVI+Y+ 
Sbjct: 410  QGRGSAANSIVCYCLHVTEIDPVHMNMLIERFISRARNEPPDIDVDFEHQRREEVIQYIY 469

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
             KYG  R A   +  +   ++AL+DVG+AL +  S ++R+ K              +A+ 
Sbjct: 470  AKYGRHRAALTASLITYHVRSALKDVGKALGLEASLIERISKSQQWWDGSEAVAGYLAE- 528

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
                           L+ ++++L    RH S H  G VI    LS+LVP+      D  V
Sbjct: 529  ---AGFDANSHITRNLIRLTKELRLFPRHLSQHVGGFVIAKDKLSRLVPIENATMKDRSV 585

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE--TYHLLT 613
             +++   I+   L+K D L L  L+ ++++L+F+A R       +      +   Y +  
Sbjct: 586  IEWDKDDIDALKLLKVDVLALGMLSAIRRALEFVALRRGFPQFRVQDIPREDRAVYEMCG 645

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKI 671
               T+G+FQ+ES   +  L  ++P+   D++  V++ RPGPI   +V+    RK G E I
Sbjct: 646  HADTVGVFQIESRAQQSMLPRLKPNKYYDLVIEVAIVRPGPIQGGMVHPYLRRKQGLEPI 705

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM-DKQKE 730
                  + P+L+ T GV I+QEQVM +A + + Y+  +AD LRRAM    +     K ++
Sbjct: 706  DYAKDELRPVLERTLGVPIFQEQVMHLAMVAAKYTGEQADQLRRAMAAWRRTGNLAKYQK 765

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                  S  G        I + +  F +YGF +SHAA++A++ Y +AW+K + P  FLA 
Sbjct: 766  DLSDRMSARGYEPEFIDRICQQIEGFGEYGFPESHAASFALLVYLSAWLKRYEPAAFLAG 825

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRIYYS------- 838
             +  +        +  QDAR+  ++++PP V     +           RI          
Sbjct: 826  LLNSQPLGFYSPSQLVQDARRHGVKVLPPDVTLSDWESTFEKRDREGERIAPGETCLHRQ 885

Query: 839  ---LAA----------------IKGVGTTTARHIMEAS--------ADKPFDSLEDFCSR 871
               L+A                I+      A+ +            A  P         R
Sbjct: 886  QAVLSAQQLRDLSLRRLRVNRTIR----RAAKRLTARVFQAPGTYGAHGP-------AVR 934

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN------------- 918
            +    +       L  A A       R     ++D++ + A    ++             
Sbjct: 935  IGLHLIK-----GLAQAAAERIMAARRDAPFTNVDDLARRAALTRRDLEALAAANALTSI 989

Query: 919  ---------RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                            +    +     +  L      + +    ++   LG   + HPL 
Sbjct: 990  AGHRREAWWAVTAQHIVPKLLRDAPIAEAPL-ALPQADEAREIVDDYASLGLTLNRHPLA 1048

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            + +  L K   +   +  A   G   R   +V  +Q+  T  G+   +V+  +       
Sbjct: 1049 LLRARLAKQRFRTAADLAACQHGTLARACGIVTVRQRPGTANGT--IFVSIEDETGSINV 1106

Query: 1030 NFFP 1033
              +P
Sbjct: 1107 IVWP 1110


>gi|126660124|ref|ZP_01731243.1| DNA polymerase III subunit alpha [Cyanothece sp. CCY0110]
 gi|126618567|gb|EAZ89317.1| DNA polymerase III subunit alpha [Cyanothece sp. CCY0110]
          Length = 873

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 299/786 (38%), Positives = 451/786 (57%), Gaps = 43/786 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  LN ++D+    + PAIA+TD   ++ A+E  +     G++P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLNALIDRALELEMPAIALTDHGVMYGAIELIKVCRNKGVKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ +   D  +     K         V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62  IIGNEMYVINGDIEEKKKYKKY------HQVVLAKNTQGYKNLVKLTTISHLNGMQGKGI 115

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L+E   EGLI+ +    G I +       + A+     ++K+F D  Y+ 
Sbjct: 116 FARPCINKELLEEYH-EGLIVTSACLGGEIPQRILAGDIKEAKAIAKWYQKIFKDDFYLE 174

Query: 186 LQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR     + ++A    + +VATN+S F+S  D EAHD L+ +  + +++ + 
Sbjct: 175 IQDHGSVEDRIVNVAIAKIARDLGIKIVATNDSHFISCYDVEAHDALLCIQTAKLITDEK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           R R +   YLK+  EM  +F D    + +E  +      +  ++ +  +    I      
Sbjct: 235 RLRYSGTEYLKSADEMRLLFRDHLPDDVIEEAINNTLEVAEKIEPYKILGEPRIPNYPVP 294

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                ++ +   A  GL  RL     ++     DYR+RL++EL ++ RM FS YFL+V D
Sbjct: 295 AGHNPDSYVEEIAWQGLLERLKC--RSRSEIPDDYRERLEYELKMLQRMGFSTYFLVVWD 352

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           +I++A+ N IPVGPGRGS AGS+ AY L IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 353 YIKYARDNRIPVGPGRGSAAGSLVAYCLKITNIDPVHHGLLFERFLNPERKSMPDVDTDF 412

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           C +RRDE+I+YV  KYG   VAQIITF  + +KA L+DV R L +PY++ D++ K+IP  
Sbjct: 413 CIERRDEMIKYVTRKYGEANVAQIITFNRMTSKAVLKDVARVLDIPYAESDKMTKMIPVS 472

Query: 483 PAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
              P  L+ +  +      F+E    DP V R ++++ ++EG  +    HAAG+VI   P
Sbjct: 473 RGKPTKLKVMVSNETPTPEFKERYENDPLVRRWVDMAIRIEGTNKTFGVHAAGVVISSEP 532

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
           L Q+VP+ ++      +TQ+ M+ +E  GL+K DFLGL+ LT +Q++ D + Q       
Sbjct: 533 LDQVVPLQKN-NDGAVITQYYMEDLESLGLLKMDFLGLRNLTTIQRTADLIKQNQGFELD 591

Query: 599 SLI--------------------PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                                  P D   T+ LL      GIFQLESSGM+Q ++ ++P 
Sbjct: 592 LDQLPLDERKALEIIAKGTAKKLPPDVERTHKLLEKGDLEGIFQLESSGMKQIVKDLKPS 651

Query: 639 CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            IEDI ++++LYRPGP+D   I  + NRK+G+E+I+  H L++P+LKET  V++YQEQ+M
Sbjct: 652 GIEDISSILALYRPGPLDAGLIPKFINRKHGREEIIYQHKLLEPILKETYAVLVYQEQIM 711

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
           ++AQ L+GYSL EAD+LRRAMGKK   EM K +E FI GA+KNG+S+ IA ++FE + KF
Sbjct: 712 KMAQDLAGYSLGEADLLRRAMGKKKIAEMTKHREIFIDGATKNGVSQAIAEDLFEQMIKF 771

Query: 757 ADYGFN 762
           A+Y  +
Sbjct: 772 AEYCLS 777


>gi|182440484|ref|YP_001828203.1| putative DNA polymerase III alpha subunit [Streptomyces griseus
            subsp. griseus NBRC 13350]
 gi|178469000|dbj|BAG23520.1| putative DNA polymerase III alpha subunit [Streptomyces griseus
            subsp. griseus NBRC 13350]
          Length = 1155

 Score =  498 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 258/1058 (24%), Positives = 447/1058 (42%), Gaps = 60/1058 (5%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL V S +S   GA    +++ + A     A+A+TD +++  A+  ++   +AG++PI
Sbjct: 4    FTHLHVASGFSARYGASHPQDLVRRAAELGMGALALTDRDSVTGAVRHAKACLSAGVRPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPS-------IVLLVSTAEGYQRLIELVSRMYLLD 123
             G  L +   D+ +  ++ +TP             I LL  +  G+ R+  LVS  +   
Sbjct: 64   FGVDLAVPAFDSARAPHRPRTPVRGGGHVTEPRLRITLLAGSVHGWARICRLVSAAH-AH 122

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-L 182
                        L+E   E ++ + G +S P+ RA       +AEK L+ ++++ G+  L
Sbjct: 123  PVDGFPVASWEALREGLGEDVVAILGPTSEPV-RALAAGRPDIAEKLLVPWREIAGEGLL 181

Query: 183  YVNLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +    +             +  + L     +P V TN   +   E +   DVL A    
Sbjct: 182  RLEAVAYGLSGLGAGSVRLAAHTLALGDRLGVPTVLTNAVRYERREQHRLADVLDAARLL 241

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI------ 291
              V ++        +                 A        R                  
Sbjct: 242  RPVPRRGPLDPGERYLKSGAEMAEVAERVAAAASAPAGRGRRLIEETAATAEQCAVDPVR 301

Query: 292  -----LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
                    F E           + +R           A+G             RL +EL 
Sbjct: 302  DLGLGRAHFPEPHVVGAGTRPGDGMRLLRQRSEAGMTARGLDRDV----RAMDRLGYELG 357

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            VI R+ +  YFL VA  +   +   I V   RGSGAGS+  ++L I   DPL   LLFER
Sbjct: 358  VIERLGYEAYFLAVAQVVADVRSMGIRVA-ARGSGAGSMVNHSLFIATADPLSHRLLFER 416

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL+  R ++PD D+D   DRR EV   +  ++G ERVA      + +A+ ALRD G AL 
Sbjct: 417  FLSERRTALPDIDLDVESDRRLEVYDRIFERFGSERVAVTGMPETYRARHALRDTGLALG 476

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
            +    VDR+ K  P+  A  +   A+++    R+          L E+++ L+ L R  +
Sbjct: 477  IRPQTVDRIAKSFPHIRACDI-GSALSELPELRQLAAEADQYGPLWELAEGLDALPRGFA 535

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             H  G+++ D  L   +P+        P  Q +   +E  GL+K D LG++  + +  ++
Sbjct: 536  MHPCGVILSDASLLGRLPVQPAPGGAYPTVQADKHDVEDLGLLKLDVLGVRMQSAMAHAV 595

Query: 587  DFLAQRGVKVD----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
              + +   +         +   D  T+ L+ +   LG FQLESSG +  +  +QP  ++D
Sbjct: 596  AEIRRTTGRHIDLDSPDHVDLADEPTFELIRSTKVLGCFQLESSGQQDLIARLQPRHMQD 655

Query: 643  IIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            +IA +SL+RPGP+   +   +   ++G E+    HP + P++ +T GV+I+ EQ+M I  
Sbjct: 656  VIADISLFRPGPVAGGMPARFIAARHGIEEPRYPHPDLVPIMDDTYGVVIWHEQIMMILA 715

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
             ++G   + ADV RRA+    +    +   R    A + G +  +   +++++ +F  YG
Sbjct: 716  TMTGCDRAAADVARRALADAGRLPKVEVWFRRC--AGERGYTPDVIDEVWDIVKEFGAYG 773

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            F ++HA A+AV + Q+AW+KTH+P  F A  +  +       +   QDA+QF + I+P  
Sbjct: 774  FCRAHAVAFAVPAVQSAWLKTHHPAAFFAGLLQHDPGM-WAPRVLVQDAKQFGVAILPVD 832

Query: 821  VNT----PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            VNT      V+       +  +L+ ++G+    +  I    A +P+  L+D   R     
Sbjct: 833  VNTSRGAHSVEPTADGWGVRLALSTVRGITEAESARI---EAGQPYTGLQDLWLRARPSL 889

Query: 877  LNRRVLESLVFAGALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
                +++ L+  GAL       +R  LL     + + A+   +   +    +     G  
Sbjct: 890  ---PLVQRLIRIGALAPLQGRLTRRDLLLQATELHRSARN--RTAIDGQLPL-----GDE 939

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
            +                   E  VL    S H L+ +  +L ++G        A  RG  
Sbjct: 940  THAGEPAGLPEMTGRDVMSAEIDVLSIDVSRHLLEHHHRLLAELGATDARHLQAMRRGEQ 999

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +A +  S Q      G R+ +VT  + +   +  FF
Sbjct: 1000 VLVAGVRASTQTPPIPSGKRVIFVTLEDGSGLVDLAFF 1037


>gi|322648192|gb|EFY44659.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Montevideo str. OH_2009072675]
          Length = 826

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 310/698 (44%), Positives = 434/698 (62%), Gaps = 17/698 (2%)

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP
Sbjct: 1    MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNP 60

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY 
Sbjct: 61   ERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYG 120

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
             VDR+ KL+P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA 
Sbjct: 121  FVDRISKLVPPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAG 179

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + 
Sbjct: 180  GVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMIN 239

Query: 591  QRGVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            +R  K      D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IA
Sbjct: 240  KRREKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIA 299

Query: 646  LVSLYRPGPIDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
            LV+L+RPGP+ + +V       +   +     +   H  + P+L+ T G+I+YQEQVMQI
Sbjct: 300  LVALFRPGPLQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQI 359

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            AQ+LSGY+L  AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA 
Sbjct: 360  AQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAG 419

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            YGFNKSH+AAYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+P
Sbjct: 420  YGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILP 479

Query: 819  PSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKK 876
            P +N+    F V D   I Y + AIKGVG      I++A      F  L D C+R D+KK
Sbjct: 480  PDINSGLYHFHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKK 539

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFS 935
            LNRRVLE L+ +GA D  G  R  L+ SL +  K A    K       ++F    +    
Sbjct: 540  LNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQ 599

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNN 994
             + +          V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG  
Sbjct: 600  IEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKV 659

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               A +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 660  TTAAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLF 697


>gi|152967159|ref|YP_001362943.1| DNA polymerase III, alpha subunit [Kineococcus radiotolerans
            SRS30216]
 gi|151361676|gb|ABS04679.1| DNA polymerase III, alpha subunit [Kineococcus radiotolerans
            SRS30216]
          Length = 1320

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 281/1169 (24%), Positives = 483/1169 (41%), Gaps = 156/1169 (13%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +P F HL V S YSL  G  +   ++ + A      +A+TD + L  A++F +    A
Sbjct: 3    TTAPPFPHLHVASGYSLRYGTSTPAALVARAADLGLATLALTDRDGLHGAVKFVRACVDA 62

Query: 66   GIQPIIGCQL-------------------DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA 106
            GI P++G  L                    +  + +      G    P  P I  L   A
Sbjct: 63   GIAPVLGVDLATTPTGSATGLPEWADPSVAVRRRGSRAPVRGGSVVDPRWPRITALALGA 122

Query: 107  ------EGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT--EG---LIMLTGGSSGPI 155
                   G+  L  LVS  +L    + +    L  +       +G   L +L G     +
Sbjct: 123  DEAGAGRGWAGLCRLVSATHL-GGRRGTPVSSLELVAAHARGTDGRAVLAVLLG-PGSEL 180

Query: 156  DRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYDR-----YRESQVVQLAYTHEL 209
             RA       +A   L  +++      L++ +  H             ++V+ LA    +
Sbjct: 181  GRAVLARRDDLARAVLRRWQEALPAGSLHLEVVCHHAPPGTAGSVEHAARVLGLAREAGV 240

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            P V T        +     D+L AV     +  +   R T   +L   +EM    +D+  
Sbjct: 241  PAVLTAAVRSAEPDGALTADLLDAVRRLVPLGPRHLDRTTGQGHLLPSAEMARTAADVAR 300

Query: 270  ALENTVEIARRCS---------FILQVHAPILPRFIEKECDDIQKEEE-NELRNKAVAGL 319
            A  +    A   +          I       L R    +   +   ++ ++         
Sbjct: 301  AAGDPAAAADLLAATAVLAGRARIDPARDLGLGRHHLPDPAALGLGDDVDQSALLRGRAE 360

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                A+   A      + R+RLD EL +I ++ F+ YFL VAD     +   + V   RG
Sbjct: 361  ARIAARYPGAGASREAEVRRRLDEELAIIEQVGFASYFLTVADVCDLTRAMGVRVA-ARG 419

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            SGAGS+  + L I+D++PL   LL ERFLNP R  +PD D+D    RR++V R V +++G
Sbjct: 420  SGAGSLVNHLLGISDVEPLGHGLLMERFLNPRRGQLPDIDLDVESARREDVYRAVLDRFG 479

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             ERV  +    S + + A+RDVG AL +P ++VD +    P+      +  AIA+    R
Sbjct: 480  GERVTCVSMMDSYRVRHAVRDVGAALGLPPAEVDAIATAFPH-LRARDARAAIAELPELR 538

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
             + L +  +    ++ ++L+GL RH + H  GIV+ +R L    P+        P++QF+
Sbjct: 539  RSGLGEERLSTFFDLVERLDGLPRHVALHPCGIVLSNRTLLDRTPVE-ASWRGFPMSQFD 597

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----RGVKVDLSLIPFDDHETYHLLTTK 615
               +E  GL+K D LG++  + +  ++  + +    R    D   +P DD  T+ L+ + 
Sbjct: 598  KDDVEDLGLLKLDVLGIRMQSAMAYAVREVERVEGVRIDLDDRQQVPLDDPATFRLIRST 657

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVS 673
             TLG FQ+ES G R+ +    P+   DI+  +SL+RPGP+ + +   +   + G      
Sbjct: 658  RTLGCFQIESPGQRELVGKFAPETFHDIVVDISLFRPGPVKSDMVAPFLRARQGWAAPEF 717

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
            +   + P+L++T GV+++ EQV++I +  +G+ L+ +D  RR +G   ++  ++ + +F 
Sbjct: 718  LDDRLRPVLEQTHGVVVFHEQVIEIIRATTGHDLAVSDEYRRHLGT--RQGQEEMEPQFK 775

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
              A ++G  + +   I+E+L  FA +GF K+HAAA+A+ +YQ+AW+KTH+P  FLA  +T
Sbjct: 776  RRAVEHGYPEDVVARIWEVLKAFASFGFCKAHAAAFALPTYQSAWLKTHHPAAFLAGVLT 835

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------------------- 831
             +     K      DAR   ++++   VN     ++V                       
Sbjct: 836  HDPGMYPKRLIL-DDARNLGVEVLGLDVNASGDTYRVEPVDLPGPRPAPHGQAALHPWPG 894

Query: 832  ------------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                                 I  SL+ +KG+       ++   A +P+ SL D   R  
Sbjct: 895  WREGRDAEGLGEGVADGTGFGIRLSLSDVKGISAAEVSRLV---AGQPYRSLADLWQRAR 951

Query: 874  SKKLNRRVLESLVFAGALDCFGY-----------------SRMQLLQSLDNIQKYAQWV- 915
                +R V E LV  GALD                     +R  LL  +  + ++ +   
Sbjct: 952  P---SRPVAERLVLTGALDSLHGLRPVGRAGEPAPRRGRTTRRDLLLQVAELDRWTRSTA 1008

Query: 916  --------EKNRTNKHENI------------------------FAHEKGTFSDKITLEKF 943
                              +                         A + G   +++     
Sbjct: 1009 GPGPVRVPRAVAAGGPGPLDVRAAAAAQSRAARPVADPAGAVQLALDLGDAPEEVAPSGL 1068

Query: 944  SVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
                 + R   E  VLG   S H +D Y P+LR +G+    E  +      + +A + V+
Sbjct: 1069 PEMTGAERVRAELDVLGLDVSSHVVDFYAPLLRALGVTPARELRSRRNAAQLLVAGVKVA 1128

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             Q    R G R+ ++T  +     +  FF
Sbjct: 1129 TQTPPVRSGRRVVFLTLDDTTGPLDVTFF 1157


>gi|326774355|ref|ZP_08233620.1| DNA polymerase III, alpha subunit [Streptomyces cf. griseus
            XylebKG-1]
 gi|326654688|gb|EGE39534.1| DNA polymerase III, alpha subunit [Streptomyces cf. griseus
            XylebKG-1]
          Length = 1147

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 270/1058 (25%), Positives = 448/1058 (42%), Gaps = 64/1058 (6%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            VHL V S YS   GA    +++ K A      +A+ D + +   + F+  A   GI+P+ 
Sbjct: 4    VHLHVSSGYSARYGASLPADLVRKAAERGVGTLALADRDTVAGTVRFAHAAVRTGIRPVF 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTV-------PSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G ++ +          + +TP             + LL  T  G+ RL  +VS  +    
Sbjct: 64   GVEVAVAPYTPSGPAPRRRTPVRGGAHVVEARYRVTLLARTRAGWARLCRIVSAAH-AAP 122

Query: 125  GKQSVRICLSWLQEIGT-EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  +    LQE    E L++L G  S P+ RA       VA + L  ++ + G  L 
Sbjct: 123  VDGVPVVGWPVLQEYLAGEELVVLLGPVSEPV-RALSAGRPDVAGRLLEPWRVVAGAGLR 181

Query: 184  VNL-----QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            +       Q          ++ +QL   H +P+V +N   + S + +   DVL A     
Sbjct: 182  LEAVWLNRQGTGPGSLRLAARTLQLGEQHTVPVVVSNAVRYASPDQHRLADVLDAARLLR 241

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE-----------IARRCSFILQV 287
                  R     + +LK    M  I   + EA     E            A  C      
Sbjct: 242  P--IGPRDLDGGERWLKGPEAMAGIAGRIAEAAGAGPERAAALLAETAATADSCRLDPAD 299

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                 P F E +       + + +R           A+G    G  ++    +L++EL V
Sbjct: 300  LGMGRPHFPEPQAVGAGTGQGDAMRLLRQRCEAGMTARGLDRDGRASE----QLEYELGV 355

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I R+ + GYFL VA  +   +   I V   RGSGAGS+  +AL I   +PL   LLFERF
Sbjct: 356  IGRLGYEGYFLAVAQVVADVRAMGIRVA-ARGSGAGSMVNHALFIATANPLEHRLLFERF 414

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            L+  R S+PD D+D    RR EV   +  ++G  RVA      + +A+ ALRD G AL M
Sbjct: 415  LSERRTSLPDIDLDVESARRLEVYDRIFERFGSSRVAVTGMPETYRARHALRDTGLALGM 474

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
            P  Q+  + K  P+  A  +   A+A+    R           L E+++ L+GL R  + 
Sbjct: 475  PPQQIAGITKSFPHIRARDI-RSALAELPELRGLAARAGEFGPLWELAEGLDGLPRGYAM 533

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL--IKFDFLGLKTLTLLQKS 585
            H  G+++ +  L   VP+        P+ Q +   +E  G   +K D LG++  + +  +
Sbjct: 534  HPCGVILSNTTLLDRVPVQ-PTPGGYPMLQADKADVELEGYGLLKLDVLGVRMQSAMAHA 592

Query: 586  LDFLAQRGVKV----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            +  + +   +         +  +D +T+ L+    TL  FQ+ESSG    L  +QP  ++
Sbjct: 593  VSEIRRTTGRQLDLDSPDHVDLNDQKTFELIRAADTLACFQIESSGQLDLLSRLQPRHLQ 652

Query: 642  DIIALVSLYRPGPIDNIVVYNNR-KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            DIIA +SL+RPGP+   +                HP + P+L +T GV+I+ EQ++ I  
Sbjct: 653  DIIADISLFRPGPVAGGMPARFIAARHGGTPHYPHPDLVPILDDTGGVVIWHEQIIAILA 712

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
             ++G   +  DV RRA+    +    +   R  + AS    +  +   ++ ++ +F  YG
Sbjct: 713  RMTGCDRAAGDVARRALAAPDRLPGVEAWFRQAATASGR-YTPRVIDEVWAVIKEFGAYG 771

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            F ++HA A+AV + Q+AW+K HYP    A ++  +   +   +    DAR+ ++ ++P  
Sbjct: 772  FCRAHAVAFAVPAVQSAWLKAHYPAALYAGALEHDPG-LWPARVIAADARRHDVPVLPVD 830

Query: 821  VNTPCVDFKVG----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            +NT    + V        +  SL+ + G+       I E    +P+ SL+DF +R   K 
Sbjct: 831  INTSKAQYAVERAGSGWGVRISLSTVHGISEGEVARIAE---GQPYTSLQDFYARAHPKL 887

Query: 877  LNRRVLESLVFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
                 +E L+  GALD      SR  LL     + + A+            +      + 
Sbjct: 888  ---PTVERLISVGALDQVKGEASRRDLLLQAAELHRQARTR---PGTGQLTL-----ASA 936

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
                         +  R + E  VL    S H L+ +  +LR++G    +   A   G  
Sbjct: 937  PYAAGASGLREMTARDRLDAELGVLKIDVSRHLLEDHHRLLREIGATDAQHLGAMHPGQR 996

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +A +  S Q      G RI +VT  + +   +  FF
Sbjct: 997  VLVAGVRSSTQTPPIASGKRIIFVTLEDGSGLVDLAFF 1034


>gi|300779744|ref|ZP_07089600.1| DNA-directed DNA polymerase [Corynebacterium genitalium ATCC 33030]
 gi|300533854|gb|EFK54913.1| DNA-directed DNA polymerase [Corynebacterium genitalium ATCC 33030]
          Length = 1074

 Score =  496 bits (1276), Expect = e-137,   Method: Composition-based stats.
 Identities = 275/1045 (26%), Positives = 466/1045 (44%), Gaps = 101/1045 (9%)

Query: 7    KSPS--FVHLQVHSSYSLLE---GALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            ++P+  F  L   S+YS L    GA     I+ +       A+ + D +  + A++F++ 
Sbjct: 56   RAPAVPFAELHAVSTYSFLSDTGGASEPEEIVARAQELGLSAVGLLDRDGFYGAVKFAEA 115

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A   G+  + G +L +   D       G     +V  + ++    EGY+RL  L++  ++
Sbjct: 116  AAEVGMPTVFGAELSLPRDD-------GGPGDDSVIPLSVIARGPEGYRRLSHLMAAAHM 168

Query: 122  LDQGKQSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179
                K  V    L  + +       +L               +S     R+    + FG 
Sbjct: 169  ATGEKDKVLYPPLPVIADELAGTCTVL---------------ASWQWADRIDDLIEYFGP 213

Query: 180  DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            DR+          +    ++ ++ AY H +P + +      + +         ++A    
Sbjct: 214  DRVVREFTATMLPEDADHNEALR-AYPH-VPAIISAAPGAATRQGARLAGAKRSLARRQA 271

Query: 240  VSQKDRPRVTP-DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            +            ++L++  +++++     + L  TV++A  C+F L + AP LP F   
Sbjct: 272  MGVAYCDLHPMGANWLRSGEQLLAMAPGCADMLAATVDLAAECAFTLNLVAPQLPLFPTP 331

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            +  D    E + LR+      E R A          +    +++ ELNVI ++ F GYFL
Sbjct: 332  DGHD----EMSWLRHLVRVRGEERYA---SRPADVRERACTQIEHELNVIEQLGFPGYFL 384

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            IV D + + ++++I    GRGS A S   +AL IT+++P+   LLFERFL+PDR   PD 
Sbjct: 385  IVNDIVDFCRESDIL-CQGRGSAANSAVCFALGITNVEPISAQLLFERFLSPDRDGPPDI 443

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            DID    RR+E I+YV   YG +  AQ+    + ++K A+RD  RAL  P    D   K 
Sbjct: 444  DIDIESGRREEAIQYVYRTYGRDNAAQVANVITYRSKGAVRDAARALGYPQGAADAWSKG 503

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
            +   P+                          +  ++++L G  RH   H+ G+VI DRP
Sbjct: 504  LSEPPS-------------------------LVSSLAEQLRGQPRHLGIHSGGMVICDRP 538

Query: 539  LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVD 597
            ++ +VP+      D  V Q++      AGL+KFD LGL  L  L   +D + +    +V 
Sbjct: 539  IADVVPVEWARMEDRSVVQWDKDDCASAGLVKFDLLGLGMLEALHHMIDLVRETTGREVR 598

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID- 656
            L  +P DD   Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI  
Sbjct: 599  LWELPLDDASVYDMLARADAVGVFQVESRAQMNTLPRLKPREFFDLVVEVALIRPGPIQG 658

Query: 657  -NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             ++  Y  R++G+E I   HP+++  L  T G+ ++QEQ+MQIA   +G++ +EAD LRR
Sbjct: 659  GSVHPYLRRRDGREPIEFDHPVLEKSLGRTLGIPLFQEQLMQIAVDAAGFTGAEADSLRR 718

Query: 716  AM-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            AM  K+   +M+  ++RF  G  + NGI   +A  +++ +  FA YGF +SH+ ++A + 
Sbjct: 719  AMGSKRSPAKMEALRQRFFDGCRETNGIDSAVADRLWQKIVAFAAYGFPESHSQSFASLV 778

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-- 831
            Y +AW K +YP +F    +  +       +   QDAR+  I ++P SVN    + +    
Sbjct: 779  YFSAWFKHYYPAQFCVGLLRAQPMGFYSPQSLIQDARRHGIDVLPVSVNESGCEARCVVD 838

Query: 832  -----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                 D  I   +  IKG+G   A  I  A   +PF  + D   R D   L+    E+L 
Sbjct: 839  AVSGADPAIRVGMNLIKGLGDKAAERIEAA---QPFTGIPDLSRRAD---LSVEHAEALA 892

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AGALDCFG  R Q L         A      R      + A         I+       
Sbjct: 893  RAGALDCFGVDRRQALWQ-------AGVAATERDGMLPGLSA---------ISAPALPGM 936

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            N+      +    G      P+++ +  L   G+    + ++   G  +R+A ++  +Q+
Sbjct: 937  NAFELMAADVAATGVTPGLMPMEMLRGALGATGVVAAADLMSVEDGTRVRIAGVITHRQR 996

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANF 1031
              T  G  + ++   +         
Sbjct: 997  PVTAGG--VTFMGLEDETGLMNVVI 1019


>gi|255523410|ref|ZP_05390379.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
 gi|255512868|gb|EET89139.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
          Length = 959

 Score =  495 bits (1275), Expect = e-137,   Method: Composition-based stats.
 Identities = 320/847 (37%), Positives = 480/847 (56%), Gaps = 52/847 (6%)

Query: 232  MAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            M +    VV++++R R  + + YLK+  EM  IFS +PEALENTV+IA +C+F  + H  
Sbjct: 1    MCIQTGKVVNEENRMRYPSDEFYLKSPEEMYKIFSRVPEALENTVKIAEQCNFDYEFHKS 60

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ---------------GAIAKGYHAQ 335
             LP+F   E      E    LR+    GL  R  +                       A+
Sbjct: 61   KLPKFPLPEHV----EPYEYLRDLCYKGLIQRYKEFEQLKEVSFSIESVNELADSNDEAK 116

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
               +RL++EL++I +M +  YFLIV DFI ++ +N I  GPGRGS AGS+ AY L IT I
Sbjct: 117  KLVERLEYELSIIKQMGYVDYFLIVWDFINFSVENGIMTGPGRGSAAGSIIAYTLGITKI 176

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DP+++SLLFERFLNP+R+SMPD D DFC +RR EVI YV  KYG   V+QIITFG++ A+
Sbjct: 177  DPIKYSLLFERFLNPERVSMPDIDSDFCYERRGEVIDYVVRKYGENSVSQIITFGTMAAR 236

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEI 514
            A +RDVGRA+  PY++VDR+ K+IP  P   +++   +  +S   EA   +     L++I
Sbjct: 237  ACIRDVGRAMNYPYAEVDRIAKMIPAAPGKAITIDKALELNSELEEAYENEERTKALIDI 296

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            ++ LEGL RH STHAAG+VI  +PL   VPM ++   D  VTQF M  +E+ GL+K DFL
Sbjct: 297  ARALEGLPRHTSTHAAGVVIASQPLVNYVPMQKN--EDNIVTQFTMGTLEELGLLKMDFL 354

Query: 575  GLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL+TLT+L+ ++  +   +G+ +DL  I +DD   Y ++    T+GIFQLES+GM   ++
Sbjct: 355  GLRTLTVLRDAVSMVKDNKGINIDLDKIDYDDKNVYKMIGEGKTVGIFQLESAGMTSFMK 414

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
             ++PD +EDIIA +SLYRPGP+  I  Y + KN  E I  + P ++ +L  T G ++YQE
Sbjct: 415  ELRPDSLEDIIAGISLYRPGPMAEIPKYISNKNNPEGIEYLTPELESILGVTYGCMVYQE 474

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS------------GASKNGI 741
            QVM+I + L+GYS+  +D++RRAM KK    M++++  FI             G  KNGI
Sbjct: 475  QVMEIVRKLAGYSMGRSDLVRRAMSKKKHHVMEEERHNFIYGIVDEEGVEKVPGCIKNGI 534

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
            S+  A  IF+ +  FA Y FNKSHAA+YAV+++QTA+M  +YP E++AA +     + EK
Sbjct: 535  SEDAADKIFDSMMDFASYAFNKSHAASYAVVAFQTAYMIHYYPTEYIAAMLNSVKGDNEK 594

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DK 860
            +  + + A +  IQ++ P++N     F V +++I + L+AIK VG      I+++     
Sbjct: 595  VAYYTRFADEIGIQVLTPNINESYAKFTVKEDKIRFGLSAIKNVGENVIDSIVKSRERKG 654

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             F +L DFC+++D   +N+RV+ESL+ AGA DCF   R +LL   + +        K   
Sbjct: 655  VFSNLVDFCNKIDVSCINKRVVESLIKAGAFDCFKVYRSKLLAVYEKVLDGVSNSRKKNI 714

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
            +   ++F   K     KI   +            E+ + G Y SGHPL+ Y+  L     
Sbjct: 715  DGQLSLFTDFK-KIEVKIEYPEIKEFEKRHILAMEKEMTGLYLSGHPLEEYEKSLSLQTS 773

Query: 981  KGYEESVA--------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
                + +                  G+ + +  ++ S  +K TR    + ++   +    
Sbjct: 774  AKISDIIGDESLEDGTVGQQSKLKDGDKVIIGGIINSVTKKVTRNNDMMAFIKLEDLYGV 833

Query: 1027 YEANFFP 1033
             E   FP
Sbjct: 834  IEIIIFP 840


>gi|15894506|ref|NP_347855.1| DNA polymerase III Alpha chain (dnaE) [Clostridium acetobutylicum
            ATCC 824]
 gi|15024147|gb|AAK79195.1|AE007635_9 DNA Polymerase III Alpha chain (dnaE) [Clostridium acetobutylicum
            ATCC 824]
 gi|325508637|gb|ADZ20273.1| DNA Polymerase III Alpha chain (dnaE) [Clostridium acetobutylicum EA
            2018]
          Length = 1112

 Score =  495 bits (1274), Expect = e-137,   Method: Composition-based stats.
 Identities = 256/1091 (23%), Positives = 469/1091 (42%), Gaps = 98/1091 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            S+  L  H  YSLL+       I+ K       AIAIT+  N+FS + F ++    G++ 
Sbjct: 2    SYAELHCHDCYSLLDAISKPEEIISKAKEYGYSAIAITNHGNMFSMVNFQKEGEKQGVKT 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G +        +K          T   ++LL    EG + L EL S  YL +   +  
Sbjct: 62   ILGIEAYEADNLRIK--------DDTRYHLILLAKNNEGLKALYELSSISYL-EGFYKKP 112

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+ +  ++    + LI+ +   +G IDR    +    A++ +  +KK+F    Y+ +Q H
Sbjct: 113  RLDIKEIEPYAKD-LIISSACMAGRIDRLLLADKYNEAKEWIYKYKKVFP-NFYLEMQHH 170

Query: 190  RGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
               ++   ++++ +L      P + T++S ++++ED +AH + +       V +      
Sbjct: 171  DVIEQANLNKLIVRLGKETGTPYIMTSDSHYINKEDQKAHSIFIQTNEKREVGEIYDGCY 230

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                       M  I  D  E   +  E   +   +    +               K   
Sbjct: 231  LKSEKEIKEIMMKQIDKDDIELAISNTEKIAKECNVKIDLSLPNQMPEIP-IPKEFKNIN 289

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
                     G + +            + + +R+  E  V+  + +  YF+++    + AK
Sbjct: 290  QYYMYLINKGFKEKKLNKLPKNEL--KKHIERIKSEYEVLDYVHYIDYFVMLYMLTKAAK 347

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            K NIP+G  RGSG   +T + + +T I+ LR++L F RF +  R S+ D+D+D  + RR 
Sbjct: 348  KRNIPLGFSRGSGGNCLTLFDMGVTGINSLRYNLDFSRFASKGRTSLADYDMDMSKRRRK 407

Query: 429  EVIRYVQNKYG------HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
            E+I   +  +       H +VA I TF S   K A RD+G+ALQ+  +  D   ++    
Sbjct: 408  EIIDISKELFNKYEDILHTQVAPICTFNSFSTKVACRDIGKALQVNNTYPDLTYQVRDIV 467

Query: 483  PAHPVSLQAIADD-----SRFREARLADPSVDRLLEISQKLE----------GLYRHAST 527
                  +    ++        ++ +    S ++L   ++K            GL +    
Sbjct: 468  AKMIPKVTRYDEETGEAIEEDQQLKSIIDSNEKLQTYAKKYPLWFKYIIKLEGLPKSLGC 527

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            HA+G+VI  +P+    P+  +      +       ++   L+K DFLGLKTL ++  +L 
Sbjct: 528  HASGVVISPKPIIDYAPLCLNKDKQPMIQLEMHNVLDDLHLVKMDFLGLKTLDVIDDALK 587

Query: 588  FLAQRGVKVDLSLIPFDDHETYH-LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
                    +D++ I  +D + Y  +     T+G+FQ+ES+  RQ     Q D IED+IAL
Sbjct: 588  LAKLTYDDIDINKINLNDPKVYKNIYKKGNTIGVFQMESAEARQMNIDAQTDNIEDVIAL 647

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
             +L RP        +   K   E +  IH  +  +L+ T GV++YQEQ + I + L+ + 
Sbjct: 648  NALNRPACKAMFPDFVENKQHPENMKLIHEDLRSILQSTYGVLLYQEQSLSIFR-LANFP 706

Query: 707  LSEADVLRRAMGKKIKEEMDKQKER--------------FISGASKNGISKTIAVNIFEL 752
             SE D+ RRA+GKK  E M   +E+              +  G  + G +     +I++L
Sbjct: 707  DSEVDLARRAIGKKDMEIMKSLEEKLRDKVVKDEDGHILWHYGLKQRGWADKQIEDIWKL 766

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L K A Y FNK H+ AY ++SY TAW+KT+YP EF+ A +  E+ + EKI K+  + ++ 
Sbjct: 767  LLKQATYSFNKGHSTAYGLLSYITAWLKTYYPTEFMTALLNSEIGDYEKIAKYIIECKKM 826

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            N++++ P +N     F +  + I + +  IK VG +    I+    ++P+ S  DF +R 
Sbjct: 827  NVKVIEPDINKSIDFFSISKSSILFGINMIKNVGDSVIPDII---NNRPYQSFNDFITRC 883

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL------DNIQKYAQWVEKNRTNKHENI 926
            +   + +R   +L+ +GA + F   +  LL           + K  + ++  +      +
Sbjct: 884  N---IGKRATIALIKSGAFNEFNKDKSTLLYEYCKSAYTPTVYKPVKNLKTKKQMFELGL 940

Query: 927  FAHEKGTFSDKITLEKFSVENSSVRFENEQ------------------------RVLGFY 962
               E       + L + +  N +   + E+                          L  Y
Sbjct: 941  VEDEITWKDKDLCLARLNAYNKNKYIKKEKERYEKCYKEFEEKYMQGSIEDWQFETLSMY 1000

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             +  P    + IL+        + +    G    +A  + + + K  +K ++  +V+   
Sbjct: 1001 LTVDPFKELRKILKPF------DDMGEGIG---LIAGTIFAIENKVDKKNNKYAFVSLIN 1051

Query: 1023 -PAKEYEANFF 1032
              +K  EA  +
Sbjct: 1052 QESKIIEAVTW 1062


>gi|85716686|ref|ZP_01047655.1| DNA polymerase III subunit alpha [Nitrobacter sp. Nb-311A]
 gi|85696526|gb|EAQ34415.1| DNA polymerase III subunit alpha [Nitrobacter sp. Nb-311A]
          Length = 1167

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 260/1108 (23%), Positives = 440/1108 (39%), Gaps = 130/1108 (11%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI- 67
            PS+  + + +++S L GA      + + +  + P I I D N L   +    +     + 
Sbjct: 8    PSYAEIGIATNFSFLHGASHPQEYVHQASELRLPVIGIADRNTLAGVVRAYTELENPEVR 67

Query: 68   ---QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
               + +IG +L                     P I++       Y RL +L++R  L  +
Sbjct: 68   YKPRLLIGSRLVFIDG---------------TPDILIYPRGRHAYGRLCQLLTRGKLAAE 112

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K   R+ L  L +     L++LT         A          K L   ++   D +++
Sbjct: 113  -KGECRLKLDDLLDFSEGQLLVLTLPHRFETTTAL---------KVLERLRQSRADGVWL 162

Query: 185  NLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
                 +RG D  R +Q+ ++A +  +PL+ATN  L+         DVL  V     +   
Sbjct: 163  AASLLYRGDDVRRLAQLDRIAASARMPLLATNEVLYHHPARRPLQDVLTCVREKAAIDAI 222

Query: 244  DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R   +  + +LK   EM  +F DLP A+  T+  A R  F L       P         
Sbjct: 223  GRKLVINAERHLKPAHEMEKLFRDLPGAIAETMVFASRIEFTLDQLQYQYPDEPVPPG-- 280

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              K  +  L +   AG+E     GA       +D +  L  EL++IA + ++ YFL V D
Sbjct: 281  --KSAQRHLEDLTWAGVEKYFPGGAD------EDLKAALRKELDLIAELNYAHYFLTVHD 332

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             ++WA+  +I    GRGS A S   Y L IT +DP +  LLFERF++ +R+  PD D+DF
Sbjct: 333  IVRWARDQDIL-CQGRGSAANSAVCYVLGITSVDPTKVDLLFERFISKERLEPPDIDVDF 391

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EV++YV  +YG  R A I T    + ++A+RDVG+AL +       L   +   
Sbjct: 392  EHSRREEVMQYVYRRYGRHRAAIIATVIHYRPRSAIRDVGKALGLTEDVTAALADTVWGS 451

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                VS   I    R       +P V   +E++ +L G  RH S H  G V+    L   
Sbjct: 452  WGDDVSDAQI----RQAGFDPQNPMVRLAVELATELIGFPRHLSQHVGGYVLTQDRLDTY 507

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLI 601
            VP+           +++   ++   ++K D L L  LT ++K  D +A     + +L+ I
Sbjct: 508  VPIGNAAMDGRTFIEWDKDDVDAMRMMKVDVLALGMLTCIRKCFDLIADHKGERWELATI 567

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P D+   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+
Sbjct: 568  PQDEKPVYDMLCRGESLGVFQVESRAQMNMLPRLRPRTFYDLVIEVAIVRPGPIQGDMVH 627

Query: 662  N---NRKNGKEKIVSIHP------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                 R     KI   +P       +  +L+ T GV ++QEQ M+IA + + ++  EA+ 
Sbjct: 628  PYLKRRTMDPAKIEYPYPKGGDKNELRNVLERTLGVPLFQEQAMRIAIVAAKFTSEEANG 687

Query: 713  LRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRRAM        +   +E+ ++     G     A N FE +  F  YGF +SHAA++A 
Sbjct: 688  LRRAMATFRNIGTIGSFQEKMVNSMIARGYDPVFAKNCFEQIKGFGSYGFPESHAASFAQ 747

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            + Y ++W+K  +P  F    +  +        +   DAR+  +++ P  V+       + 
Sbjct: 748  LVYVSSWLKHFHPDAFCCGLLNSQPMGFYAPAQIVGDARKNGVEVRPLDVSYSFSQNTLE 807

Query: 832  D-----NRIYYSLAAIKGVGTTTARHIMEA------------SADKPFDSLEDFCSRVDS 874
                  + +      I G          E                     L+D C R   
Sbjct: 808  QRVGEHHAVRLGFRQIDGF--KWVDKDEERGKQQTADLWGRVREGGE---LQDPCLRCPP 862

Query: 875  KKLN-------------------RRVL--ESLVFAG-------A-----LDCF-GYSRMQ 900
              L+                   R  L   SL           A           +SR  
Sbjct: 863  LHLSPTRGERAGRAWIGTSNPPPREQLFSSSLTSGDWGERIVTARRHRPFTSIEDFSRAT 922

Query: 901  --------LLQSLDNI------QKYAQWVEKNRTNK-HENIFAHEKGTFSDKITLEKFSV 945
                    LL   D        ++ A W  +   +     +F            +     
Sbjct: 923  KLPKRALILLADADAFRSLGLDRRAALWAVRRLPDDVPLPLFESAAAHELPDEHVAPLPP 982

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
               S +   + + +     GHP++  + +L +  +    E      G  ++ A +V+ +Q
Sbjct: 983  MPLSEQVIADYQTVRLSLKGHPMEFLRVMLTRERVASCAEVCHANDGRRVKCAGVVLVRQ 1042

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  +  G  + ++T  +         +P
Sbjct: 1043 RPGSANG--VVFMTLEDETGIANIVVWP 1068


>gi|256832419|ref|YP_003161146.1| DNA polymerase III, alpha subunit [Jonesia denitrificans DSM 20603]
 gi|256685950|gb|ACV08843.1| DNA polymerase III, alpha subunit [Jonesia denitrificans DSM 20603]
          Length = 1093

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 280/1072 (26%), Positives = 458/1072 (42%), Gaps = 80/1072 (7%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             SP +  L  HS+YS L+GA S    + +       A+A+T+ N L+SA++ +  A   G
Sbjct: 2    SSPRYAELHAHSTYSFLDGASSPAEFVAEAERLGLSALALTEHNGLYSAVQVATAAKDTG 61

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            ++ + G ++ +   D  +     + P      +V+L     GY+ L   +S  +L    K
Sbjct: 62   VRTVFGAEVSVTPADAPEPVAGHRDPQAD--HLVVLARDPRGYRALSHALSLAHLAGGAK 119

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
                   + L + G +  ++L G    PI RA        A +      + FG   L ++
Sbjct: 120  GRTHHTYTSLADQGDDQWVILAGCRKSPILRALQRQGHDAALEVAHDLAQRFGRQNLVID 179

Query: 186  LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
              R    YD      V ++A   ++ L+A+ N+ +    D+   +VL A+     ++  D
Sbjct: 180  WVRRGTAYDDALGDAVERVAQEAKIALIASTNAHYAHPRDHRRAEVLSALGAGRTLADND 239

Query: 245  RPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              R  +P  +L++  +MV + +  P +++    +A   +F   V AP LP +      D 
Sbjct: 240  PWRLASPTAHLRSARDMVRLHARRPHSVDAAARLADELAFDFDVVAPRLPPYPVPAGHD- 298

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               E   LR+                         Q +D EL++I  + F+GYFLIV D 
Sbjct: 299  ---ESTWLRHLTDNKARRVYGTRDTNHAA-----WQHIDHELSIITSLGFAGYFLIVHDI 350

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++   +NI    GRGS A S   YAL IT +D +R  LLFERFL P+R   PD DID  
Sbjct: 351  MEFCSTHNIL-AQGRGSAANSAVCYALGITAVDAVRHGLLFERFLAPERDGPPDIDIDIE 409

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RR+EVI++V  +YG    AQ+ T  + + + A+RD  R L  P  QV+   K I    
Sbjct: 410  SGRREEVIQHVYTRYGRHHAAQVATVITYRPRLAVRDAARVLGYPIGQVNAWSKTIDRSF 469

Query: 484  AHPVSLQAIADDSRFREARLADPSVDR-----------LLEISQKLEGLYRHASTHAAGI 532
                            +                     + + +  L  L RH   H+ G+
Sbjct: 470  RPDTPPGTPTTPDHTSDLPAPTTQPPTPHDGRADLPPAVRDTASLLHNLPRHLGIHSGGM 529

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            V+ DRP++ + P+         V Q++ +    AGL+KFD LGL  LT L+ + D +A  
Sbjct: 530  VLCDRPVTHVCPVEWGTTPGRTVLQWDKEDCADAGLVKFDLLGLGMLTALRIAFDHVAAT 589

Query: 593  GVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                  L  +P +D   Y LL    T+G+FQ+ES      L  ++P C  DI+  V+L R
Sbjct: 590  TNTALGLYTLPPEDPGVYELLQAADTVGVFQVESRAQISTLPRLKPTCFYDIVIEVALIR 649

Query: 652  PGPID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            PGPI   ++  Y  R+ G+E +   HPL+ P L++T G+ ++QEQ+MQIA   +G++ +E
Sbjct: 650  PGPIQGGSVHPYLRRRQGREPVTYPHPLLKPALEKTLGIPLFQEQLMQIAIDAAGFTPAE 709

Query: 710  ADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            +D LRRAM  K+    M+  + R + G ++ GI    +  I+E L  FAD+GF +SHA +
Sbjct: 710  SDQLRRAMGSKRSTARMEALRTRLLDGMAQRGIPPHASTEIYERLKAFADFGFPESHAFS 769

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            +A I Y +A++K H+P  F +A +  +       +    DAR+  + I  P + T  +  
Sbjct: 770  FAHIVYASAYLKRHHPAAFYSALLAAQPMGFYSPQSLMNDARRHGLTIHRPCIATSTITA 829

Query: 829  KVGDN-----------------------------RIYYSLAAIKGVGTTTARHIMEASAD 859
                N                              I   L  I  +  T A+ I+ A   
Sbjct: 830  HPTPNTPQPHPPQHNPHTFHTPASARYVPLPTTHAIQLGLTDIHTITPTIAQRIITARTT 889

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
              F  + D   R +   L    LE+L  AGAL   G +  Q + +       A    KN 
Sbjct: 890  TAFTDINDLAYRAE---LTTTQLEALAAAGALRTLGITPRQGIWA-------AATASKNT 939

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
             +    +             +       +      +        + +P  + +P L   G
Sbjct: 940  PHTLPGL---------TPHHIPALPPMTAHDTAHADYWSTRITPNTYPTQLIRPHLTAQG 990

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            I    +         +  A +V  +Q+  T  G  I +++  +         
Sbjct: 991  ILTAHQVNTHEPNRRVTTAGIVTHRQRPPTAHG--ITFLSLEDETGIINVIC 1040


>gi|311739972|ref|ZP_07713806.1| DNA-directed DNA polymerase [Corynebacterium pseudogenitalium ATCC
            33035]
 gi|311305045|gb|EFQ81114.1| DNA-directed DNA polymerase [Corynebacterium pseudogenitalium ATCC
            33035]
          Length = 1039

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 268/1033 (25%), Positives = 443/1033 (42%), Gaps = 96/1033 (9%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S  F  L   SSYS L+GA     ++ +        +AI D +  +  ++F++ A  AG
Sbjct: 44   SSVPFAELHAVSSYSFLDGAAEPEELVARAVELGLEGLAIVDRDGFYGLMKFAEAAAKAG 103

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +  + G +L +                     + +L  T EGY+RL  L++R  +    K
Sbjct: 104  LPAVYGAELSLAEAP-----------------VTVLARTPEGYRRLSRLIARARMEAGEK 146

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              V      L E+  E          G     FF    +   +     +++  D + +  
Sbjct: 147  DCVAYPP--LDEVARE--------LEGE---CFFLVGPEALAEIDNLLERIKIDSIVLEY 193

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
                  +   + + +           A   +    +    A    +A    ++ +     
Sbjct: 194  SCSMSPEDADQHRFLDKYNNLRAIATARPAAATRDQARLAAAKRALARRE-SLAAAAPHA 252

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  +L++  +M  +  D PE +  TV +AR CSF     AP LP F   E    +  
Sbjct: 253  HPMGAGWLRSGEQMAQLLPDRPELIAETVALARECSFTWDALAPNLPHFPVPE----EHT 308

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E + L ++          + A       Q  R+++  EL VI ++ F GYFLIV D + +
Sbjct: 309  EMSWLEHEVW---RRAKDRYASRPAEIRQAARKQIRHELGVIKQLGFPGYFLIVCDLVDF 365

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
             ++ NI    GRGS A S   +AL IT+ +P+   LLFERFL+PDR   PD DID    R
Sbjct: 366  CRRENIL-CQGRGSAANSAVCFALGITNAEPISAQLLFERFLSPDRDGPPDIDIDIESGR 424

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+YV   +G +R AQ+    + + K A RD  RAL  P    D   K     PA  
Sbjct: 425  REEVIQYVYRTHGRDRAAQVANVITYRRKGATRDAARALGYPQGSADAWSKGTSEPPA-- 482

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                                    +  ++++  G  RH   H+ G+V+ DRP++ +VPM 
Sbjct: 483  -----------------------DVSSLAEQFLGQPRHLGIHSGGMVLCDRPIADVVPME 519

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                 +  V Q++      AGL+KFD LGL  L  L   +D +      +V L  +   +
Sbjct: 520  WARMENRSVLQWDKDDCAAAGLVKFDLLGLGMLEALHHMIDAVRATTGREVHLWELDLAE 579

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNN 663
             E Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y  
Sbjct: 580  PEVYDMLCRADAVGVFQVESRAQLATLPRLKPRRFFDLVVEVALIRPGPIQGGSVHPYLR 639

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIK 722
            R++G E++   H +++  L +T G+ ++QEQ+MQIA   +G+S +EAD LRRAM  K+  
Sbjct: 640  RRDGLEEVAYDHSVLEKSLGKTLGIPLFQEQLMQIAVDAAGFSGAEADDLRRAMGSKRSP 699

Query: 723  EEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            E+M   + RF +G  + NGI   +A  ++  +  FA YGF +SH+ ++A + Y +AW K 
Sbjct: 700  EKMAALRSRFFAGLRETNGIEGEVADKLWAKIVAFAAYGFPESHSQSFASLVYFSAWFKY 759

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLA 840
            HYP EF    +  +       +   QDAR+  ++++P S+N      +   +  I   L 
Sbjct: 760  HYPAEFCVGLLRAQPMGFYSPQSLIQDARRHGVRVLPVSINDSGAQTRATGSAEIRLGLN 819

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             IKG+G + A  +  A    PF S+ D   R D +      +E+L  AGAL+C G  R Q
Sbjct: 820  LIKGLGESAAERVEAA---APFTSVSDLSRRADLRV---EQVEALATAGALECLGLDRRQ 873

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             L             E+       +  A                  ++      +    G
Sbjct: 874  ALWQAG-----VAATEREGMLPGTSALAS-----------PHLPGMSAFELMATDVAATG 917

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
               +  P+++ +  L    +    +      G  +R+A ++  +Q+ +T  G  + ++  
Sbjct: 918  VTHNQQPMELVRASLAD--VLPASQLPHVPDGTRVRIAGIITHRQRPRTASG--LTFLGV 973

Query: 1021 SEPAKEYEANFFP 1033
             +          P
Sbjct: 974  EDETGLMNVMVSP 986


>gi|328474631|gb|EGF45436.1| error-prone DNA polymerase [Vibrio parahaemolyticus 10329]
          Length = 1024

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 244/1037 (23%), Positives = 431/1037 (41%), Gaps = 83/1037 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA--CAAGI 67
            S+  L   S++S L GA     ++ + A  +  AIAITD  ++   ++           I
Sbjct: 2    SYAELFCQSNFSFLTGASHAEELVLQAAFYRYHAIAITDECSVAGVVKAHATIEQHKLDI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+G    ++ +                  IVLL    + Y  +  +++      + K 
Sbjct: 62   KQIVGSMFWLNEE----------------CQIVLLCPCRKAYAEMCRIITNARRRSE-KG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            S ++    L  I               +      +             +   +RL+V +Q
Sbjct: 105  SYQLSEWDLMSIRH--------CLVLWLPTHQASDHY-----WGRWLNQHHNNRLWVAIQ 151

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH  G D    +   +LA+  +LP+ A    L  + E      +L A+ H   V +    
Sbjct: 152  RHLGGDDDAYTNHCEKLAHELQLPITACGGVLMHTAERLPLQHILTAIKHGCSVDKLGFE 211

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R++           +              E ++  + + +     L      E       
Sbjct: 212  RLSNAERTLRPLNKLVRIYKPEWL-----EESKYIADLCEFKLSDLKYEYPTELIPNGYT 266

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR     G E R  +G        +D  Q ++ EL +I  +K+  YFL + D + +
Sbjct: 267  PNSYLRMLVEQGKERRFPEGV------PEDINQTIENELRLIEDLKYHYYFLTIHDIVMF 320

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+  I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +R
Sbjct: 321  AKQQGILY-QGRGSAANSVVCYCLEITAVDPRQISVLFERFISKERKEPPDIDVDFEHER 379

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG ER A   T  S + K+A+R+VG+AL +  +Q+D   K +       
Sbjct: 380  REEVIQYIYKKYGRERAALAATVISYRFKSAVREVGKALGIEETQLDFFIKNVNRRDRSQ 439

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                 I +       +       + +++  ++ G  RH S H  G VI   PL +LVP+ 
Sbjct: 440  GWQAQIIE----LGLQPESLKGQQFIQLVNEIIGFPRHLSQHVGGFVISSGPLYELVPVE 495

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---VDLSLIPF 603
                 D  + Q++   +E   L+K D L L  L  ++K    + +   +   +       
Sbjct: 496  NAAMEDRTIIQWDKDDLESLELLKVDVLALGMLNAIRKCFQLIEKHHQRSLSIAEITRRQ 555

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662
            DD   Y +L    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI   +V+  
Sbjct: 556  DDPHVYRMLQKADTVGVFQIESRAQMSMLPRLKPACYYDLVIQIAIVRPGPIQGDMVHPF 615

Query: 663  -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R+NG+E +      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM    
Sbjct: 616  LKRRNGEEPVSYPSEAVKSVLERTMGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMASWK 675

Query: 722  KEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            K     K K + ++G  + G     A  IFE +  F +YGF +SH+A++AV++Y +AW+K
Sbjct: 676  KNGDLAKFKPKLLNGMQERGYDLAFAERIFEQICGFGEYGFPESHSASFAVLAYCSAWLK 735

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRI 835
             +YP EF  A +  +        +  QDAR+  ++++P  VN       +     G   +
Sbjct: 736  YYYPAEFYTALLNSQPMGFYSSSQLVQDARRHGVEVLPICVNHSYYQHHLIQRPNGRLGV 795

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                  +KG    +A  ++E      + S+++    V     +RR +E L  A A     
Sbjct: 796  QLGFRLVKGFNEESATRLVERRPKTGYHSIQE----VKQILRSRRDIELLASANAFQILS 851

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R     +  +                  +F        ++ ++   +  +       +
Sbjct: 852  GNRYNARWAAMDSLSD------------LPLF-----HHIEEPSVSYQAQPSEYESLIED 894

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G   + HP+ + +           ++ V     + + +A +V  +Q   T  G  +
Sbjct: 895  YASTGLSLNRHPITLLEEAGILPRFTRMKQLVDKEHKSLVTVAGVVTGRQSPGTAAG--V 952

Query: 1016 GWVTFSEPAKEYEANFF 1032
             + T  +         +
Sbjct: 953  TFFTLEDDTGNINVVVW 969


>gi|320156772|ref|YP_004189151.1| DNA polymerase III subunit alpha [Vibrio vulnificus MO6-24/O]
 gi|319932084|gb|ADV86948.1| DNA polymerase III alpha subunit [Vibrio vulnificus MO6-24/O]
          Length = 1024

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 236/1036 (22%), Positives = 412/1036 (39%), Gaps = 83/1036 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQ 68
            +  L   S++S L GA     ++ +       ++AITD  +L   +            ++
Sbjct: 3    YAELFCQSNFSFLTGASHPEELIVQANFLGYHSLAITDECSLAGIVRAHSAIKQHQLSVK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G    ++ +                   VLL    E Y  L  +++      + K  
Sbjct: 63   QIVGSFFKLNTE----------------CQFVLLCPNREAYAELCRIITNARRRCE-KGQ 105

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             ++    +  +    LI L  G +               E+      +    RL++ LQR
Sbjct: 106  YQLSQWDVMSLKHCLLIWLPTGQTSD-------------EQWATWLSRYQQSRLWLGLQR 152

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    D +       LA   +LP+ A    L    E       L A+ H   V Q     
Sbjct: 153  HLHHDDEHYLHHCQTLANKFDLPITACGGVLMHRPERLPLQHTLTAIRHGCTVEQLGTQL 212

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +T         + +            ++ IA  CSF L       P  +  +        
Sbjct: 213  LTNAEQSLRSEKKLRKLFKPQWLA-ESLYIASLCSFDLDSLRYEYPSELIPDG----YTP 267

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++ L +    G ++R  +G            Q +  EL +I   K+  +FL + D + +A
Sbjct: 268  DSYLEHLVEQGKKLRFPEGV------PDAIEQTIQKELALIKEQKYPFFFLTIHDIVMFA 321

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+  I    GRGS A SV  Y L IT +DP + ++LFERF++ +R   PD D+DF  +RR
Sbjct: 322  KQQGILY-QGRGSAANSVVCYCLQITSVDPRQIAVLFERFISKERDEPPDIDVDFEHERR 380

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KYG +R A   T  S + K+A+R VG+AL +  +Q+D   K I        
Sbjct: 381  EEVIQYIYQKYGRQRAALAATVISYRFKSAVRQVGKALGIEETQLDFFLKNINRRDRQAG 440

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                + +       +         +++ +++ G  RH S H  G VI   PL +LVP+  
Sbjct: 441  WQVQLVE----LGLQPDSLKGQHFIQLVEEIIGFPRHLSQHVGGFVISSGPLYELVPVEN 496

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV---DLSLIPFD 604
                +  + Q++   +E   L+K D L L  LT ++K    + Q   +           D
Sbjct: 497  AAMPERTIIQWDKDDLESLKLLKVDVLSLGMLTAIRKCFRSIEQHHQQRLSIADITRRQD 556

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D   Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI   +V+   
Sbjct: 557  DQAVYKMIQKADTIGVFQIESRAQMSMLPRLKPACYYDLVIQIAIVRPGPIQGDMVHPFL 616

Query: 665  KNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            K    +  I      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM    K
Sbjct: 617  KRRDGEESISYPSVHVQEVLERTLGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMAAWKK 676

Query: 723  E-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               + K K + I+G  + G     A  IFE +  F +YGF +SH+A++AV++Y +AW+K 
Sbjct: 677  NGHVFKFKTKLINGMLERGYELDFAERIFEQICGFGEYGFPESHSASFAVLAYCSAWLKH 736

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-----KVGDNRIY 836
            +YP EF  A +  +        +  QDA++  I ++P  VN    +        G+  I 
Sbjct: 737  YYPAEFYTALLNSQPMGFYSPSQLVQDAKRHGIAVLPICVNFSNAEHQLVRLTSGELAIR 796

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
                 IKG+       ++     + +  + +    +       + ++SL  A A      
Sbjct: 797  LGFNLIKGLSHEGITRLLTHRPAQGYQCISEVKQILRQA----KDIQSLASANAFYQLAD 852

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R      + +                  +F     T ++          +       + 
Sbjct: 853  NRYLARWQVMDNLDE------------LPLFQTLPSTSNN-----PLPKPSDYQNVLEDY 895

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
               G   + HP+ + +            +       + + +  +V  KQ   T  G  + 
Sbjct: 896  AATGLSLAEHPVAMLEKAGGLTRFTRANQLKQCSHRSLVTVIGLVTGKQSPGTAAG--VT 953

Query: 1017 WVTFSEPAKEYEANFF 1032
            + T  +         +
Sbjct: 954  FFTLEDDTGNINVVVW 969


>gi|296120119|ref|ZP_06838673.1| error-prone DNA polymerase [Corynebacterium ammoniagenes DSM 20306]
 gi|295967273|gb|EFG80544.1| error-prone DNA polymerase [Corynebacterium ammoniagenes DSM 20306]
          Length = 1052

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 273/1042 (26%), Positives = 454/1042 (43%), Gaps = 113/1042 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S YS L GA     I+++       A+AI D +  +  ++F++ A    +  +
Sbjct: 52   FAELHATSCYSFLTGASEPEEIVERAVELGLEAVAIVDRDGFYGLMKFAEAAALQNLPTV 111

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +                     ++ L    EGY+RL  LV++  ++ + K  VR
Sbjct: 112  YGVELSL---------------GEKPTGLLALARGPEGYRRLSRLVAQARMVTKEKDEVR 156

Query: 131  IC--LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
                 +  +++G E +I+                  + AE+ +      FG   + +   
Sbjct: 157  YPSRAAIAEQLGDECVIV---------------AGYEWAEE-IDALVAEFGAQNVVLEYA 200

Query: 188  RHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSE-EDYEAHDVLMAVAHSTVVSQKDR 245
                 +     +++ ++   H L  +AT      +  +   A          ++   +  
Sbjct: 201  ATLSPEDTDHHEILDEIRARHGLRAIATALPAAANRTDARLAAAKRALARRESLEKSEPA 260

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                   +L++  +M+++  D  E +  TVE+A   +F     AP LP     E  D   
Sbjct: 261  QHPMGAQWLRSGQQMLTLMPDRGEEIAYTVELAHELAFTWDALAPNLPHCDVPEGFD--- 317

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E + LR         R      +     +  +Q+++ EL VI ++ F GYFLIV D + 
Sbjct: 318  -EMSWLRELVRQRAPERYRAHPRSW----EKAQQQIEHELAVIEKLGFPGYFLIVTDIVD 372

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +  ++NI    GRGS A SV  + L IT+ +P+   LLFERFL+PDR   PD D+D    
Sbjct: 373  FCARSNIL-CQGRGSAANSVVCFVLGITNAEPISAQLLFERFLSPDRDGPPDIDVDIESG 431

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+YV + YG +R AQ+    + + K ALRD  RAL  P    D   K        
Sbjct: 432  RREEVIQYVYSFYGRDRAAQVANVITYRRKGALRDAARALGYPQGAGDAWSKG------- 484

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                  IA+                + E+++K  G  RH   H+ G+V+ DRP++ +VPM
Sbjct: 485  ------IAEPPE------------DVSELAEKFRGQPRHLGIHSGGMVLCDRPIADVVPM 526

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFD 604
                  D  V Q++      AGL+KFD LGL  L  +   +D + + RG  ++L  +   
Sbjct: 527  EWARMEDRSVLQWDKDDCAAAGLVKFDLLGLGMLEAIHHMVDLVKETRGKTINLWELDLA 586

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYN 662
            D   Y +L+    +G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y 
Sbjct: 587  DPGVYAMLSRADAVGVFQVESRAQLATLPRLKPRRFFDLVVEVALIRPGPIQGGSVHPYL 646

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKI 721
             R+NG+E+I   HP+++  L +T G+ ++QEQ+MQIA   +G+S +EAD LRRAM  K+ 
Sbjct: 647  RRRNGEEEITYDHPVLEKSLGKTLGIPLFQEQLMQIAVDAAGFSGAEADELRRAMGSKRS 706

Query: 722  KEEMDKQKERFISGASKNGI-SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             + M+  ++RF +G  +       +A+ ++  +  FA YGF +SHA ++A + Y +AW K
Sbjct: 707  PQRMEALRQRFFNGLWETNQIDGEVALTLWNKIVAFAAYGFPESHAQSFASLVYFSAWFK 766

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN------- 833
              YP EF    +  +       +   QDAR+  ++I+P  VN    + ++  +       
Sbjct: 767  CFYPAEFCVGLLRAQPMGFYSPQSLIQDARRHGVRILPVDVNASGTEARIEKHSGKNGDD 826

Query: 834  --RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I   L  ++G+       I E   D P+  + D   R D   L    LE+L  AGAL
Sbjct: 827  DFAIRIGLNLVEGLS-KVTDRIEE---DAPYKDMADLARRAD---LTTAHLEALAKAGAL 879

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D FG SR Q L +       A+     R      +                    +    
Sbjct: 880  DGFGLSRRQALWN-------ARVAATEREGMLPGL---------TITEAPALPGMSLMEL 923

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +    G   +  P+ + +P     G+    E      G+ IR+A +V  +Q+ +T  
Sbjct: 924  VATDISATGVTHNLQPMQLIRPP----GVLTAAELKTAEDGSRIRVAGIVTHRQRPQTAS 979

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G  + +    +          P
Sbjct: 980  G--VTFFGLEDETGLINVMVTP 999


>gi|332171749|gb|AEE21003.1| DNA polymerase III, alpha subunit [Glaciecola agarilytica
            4H-3-7+YE-5]
          Length = 1030

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 246/1037 (23%), Positives = 437/1037 (42%), Gaps = 83/1037 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--I 67
             +  L   S++S L+ A   + ++ +       A+AITD  ++   +    +  +    +
Sbjct: 7    RYAELFCQSNFSFLQAASHPSELIYQADYLGYQALAITDECSVAGIVRAYSEIKSKDLKV 66

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+G  L  + +                  +VLL      Y  L  +++      + K 
Sbjct: 67   KLIVGSLLHFNAELT----------------LVLLCPNHRAYSELCRIITNARRRAE-KG 109

Query: 128  SVRICLSWLQEIGTEGLIML-TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              ++ L  L+       I L +G  +               +       K +  RL++  
Sbjct: 110  KYQLDLWDLKTTKHCLAIWLPSGDLASD-------------KHWAKWLNKNYPARLWLGY 156

Query: 187  QRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            QRH   D +      + L+    +P+ A    L  S E YE    ++   H     +   
Sbjct: 157  QRHLLSDEHLYQAHCETLSEEFSIPITACGGVLMHSPERYELL-CVLNSIHKVNNIEHSV 215

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             ++  +     R           + L  +  IA  C+F L   +   P  +  +      
Sbjct: 216  EKIPQNAERSLRPISKLKRLYPAKWLAESASIANLCTFDLSELSYQYPAELIPKG----A 271

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + LR+    G+ +R  +GA          R+ +  EL +I  +K+  +FL ++D +Q
Sbjct: 272  TPTSHLRDLVKRGMSIRFPEGASF------AIRRIIAKELKLIEALKYEFFFLTISDIVQ 325

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK  +I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +
Sbjct: 326  YAKAQHILY-QGRGSAANSVVCYCLEITAVDPRQISVLFERFISKERNEPPDIDVDFEHE 384

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  SQ+D   K I      
Sbjct: 385  RREEVIQYIYKKYGRERTAIAATVISYRQKSAIRDVGKALGIHESQLDFFIKNINRRDKA 444

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                  I++         +       + +  +++G  RH S H  G VI   PL QLVP+
Sbjct: 445  LNWQAQISE----LGLNPSSGKGKHFIHLVNEIKGFPRHLSQHVGGFVISANPLYQLVPI 500

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD---LSLIP 602
                 ++  V Q++   +E  GL+K D L L  LT ++K+ D + Q   K          
Sbjct: 501  ENASMAERSVIQWDKDDLESLGLLKVDVLALGMLTAIRKTFDLIKQHHNKTISIADITRL 560

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
              D + Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI   +V+ 
Sbjct: 561  PSDPDVYAMIQKADTVGVFQIESRAQMTMLPRLRPKCFYDLVIQIAIVRPGPIQGDMVHP 620

Query: 663  --NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
               R++G E +      ++ +L  T GV I+QEQV++IA + +G+S  EAD LRRAM   
Sbjct: 621  FLKRRDGLEPVEYPSKEVESVLSRTMGVPIFQEQVIKIAMVAAGFSGGEADQLRRAMASW 680

Query: 721  IKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
             K     K K++ I G    G     A  +++ +  F +YGF +SH+A+++V++Y ++W+
Sbjct: 681  KKTGELIKFKDKLIKGMLARGYKVQFAEQLYKQICGFGEYGFPESHSASFSVLAYVSSWL 740

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DN--RI 835
            K +YP  F    +           +  QDA++ +I+++P  +N    D  +   DN   +
Sbjct: 741  KYYYPESFYCGLLNSWPMGFYTPDQLIQDAKRHHIEVLPVCINASYYDHIIETADNQLAL 800

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                  IKG+        +++  ++ +  L           L +  LE+L  A A     
Sbjct: 801  RLGFRLIKGLSRREIEEFVDSRPNQGYSELAQLKE----SGLTKASLEALASANAFSSLS 856

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R     SL               +   ++   ++ T  +    E+ S  ++      +
Sbjct: 857  DNRYTAKWSL--------------MDSQSDLPLFKQLTMDNDFNPEQPSEFSA---LLED 899

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
             R  G     HP+ +              +       + I++  +V  +Q   T  G  +
Sbjct: 900  YRTTGMSLHSHPIRLLSEANLLGHYTPAAQLDTITHKSVIKVVGLVKGRQSPGTASG--V 957

Query: 1016 GWVTFSEPAKEYEANFF 1032
             ++T  +         +
Sbjct: 958  TFITLEDHTGNSNVIVW 974


>gi|314965837|gb|EFT09936.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL082PA2]
 gi|315094870|gb|EFT66846.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL060PA1]
 gi|315104143|gb|EFT76119.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL050PA2]
 gi|327325029|gb|EGE66837.1| error-prone DNA polymerase [Propionibacterium acnes HL103PA1]
          Length = 1031

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 272/1029 (26%), Positives = 438/1029 (42%), Gaps = 105/1029 (10%)

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++ 
Sbjct: 2    AEAAEACGLSTIIGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTD 56

Query: 119  MYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             YL++ G K      L  L E+      +LTG   G + +         AE  L     L
Sbjct: 57   AYLVEGGHKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVRGMP-QAEAELRRLVDL 115

Query: 178  FG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG D + V L  HR   D      + +LA  H L  VAT  + +   E +E    L AV 
Sbjct: 116  FGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLSTVATTAAHYAGGEQFELACALSAVR 175

Query: 236  HSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                + + D          L++ +EM  +FS   +A++NTV +A R +F L+   P LP 
Sbjct: 176  ARRSLDEMDGWLPPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLKSVRPRLPD 235

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                +         + LR+    G         +A        + RL  EL++I    F+
Sbjct: 236  QKVPDG----HTPISWLRHLVEEGRRACYGDDPVA--------KDRLATELDLIEDRGFA 283

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV+D  ++A+   I    GRGS A S   Y L IT +DP+ + L FERFL+  R  
Sbjct: 284  GYFLIVSDIAEFAQSQGIL-CQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREE 342

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D 
Sbjct: 343  EPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAIRDMAKALGYSQGQQDA 402

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
              + +      P+                     D +  ++Q++ GL RH   H+AG+V+
Sbjct: 403  WSRQMERRSVPPLPHDP-----------DGPEIPDDVTTLAQQVMGLPRHLGIHSAGMVL 451

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D ++Q   
Sbjct: 452  TREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCG 511

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ IP ++   Y +L    ++G+FQ+ES      L  ++P C  D+   + L RPG
Sbjct: 512  RFWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGVLPRLRPRCFYDLAVEIGLIRPG 571

Query: 654  PID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+    +  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD
Sbjct: 572  PVQGGAVHPYIRRRTGAEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADAD 631

Query: 712  VLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            +LRRAM  K+  E ++  + +   G + NGI    A  I+  +  FA++GF +SHA ++A
Sbjct: 632  LLRRAMGSKRGVERINSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFA 691

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--- 827
             + Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V    
Sbjct: 692  GLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADL 751

Query: 828  ---------------------------------FKVGDN----------RIYYSLAAIKG 844
                                             F    +           +   L+ + G
Sbjct: 752  ELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSG 811

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +   TA  I+E    + F SL+D   RVD        +E+L  AGA D    SR   L  
Sbjct: 812  INIETATRIVEERERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQ 868

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +  I          +      +                           ++ R  G   +
Sbjct: 869  IGQINGVGPGQLDVQVVTQPPL----------------LPEPTQMELLGDDLRATGISTA 912

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+   +  L + G+   +       G  + +A +V  +Q+  T  G  + ++   +  
Sbjct: 913  DHPVRQVRDALNRRGVVRVDRLDGVESGRRVEVAGVVTHRQRPGTAGG--VTFLNLEDET 970

Query: 1025 KEYEANFFP 1033
                    P
Sbjct: 971  GLLNVIVTP 979


>gi|84393894|ref|ZP_00992637.1| putative DNA polymerase III alpha chain [Vibrio splendidus 12B01]
 gi|84375491|gb|EAP92395.1| putative DNA polymerase III alpha chain [Vibrio splendidus 12B01]
          Length = 1030

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 242/1042 (23%), Positives = 431/1042 (41%), Gaps = 81/1042 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   +  L   S+YS LEGA     ++ +    +  A+A+TD  ++   ++       
Sbjct: 1    MSQQ--YSELFCQSNYSFLEGASHAEELVLQADFLRYKALAVTDECSVAGIVKVHSAIKQ 58

Query: 65   AG--IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                ++ I+G    ++ +                  ++L+    + Y  L  +++     
Sbjct: 59   HKLSLKQIVGSMFWLNEE----------------CQVILICPNRQAYAELCRIITNARRR 102

Query: 123  DQGKQSVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
               K   ++     +                      +                +    R
Sbjct: 103  S-SKGHYQLSGWDIMSAKHC--------------FILWLPQQKNEDAHWGQWLSQHHSGR 147

Query: 182  LYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            L++ LQRH +  D+      V+L+  H+LP+ A    L  +         L A+ +   +
Sbjct: 148  LWIGLQRHLKQTDQQYTDYCVELSQHHQLPITACGGVLMHNANRLPLQHSLTAIKYQRPI 207

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            ++     +  +     RS          E LE +  I+  C F L       P  +  + 
Sbjct: 208  TEVGSHLL-ANAERCLRSINKLSHIFKTEWLEESNRISELCKFELNSLRYEYPSELIPQG 266

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +       + LR     G + R  QG        +D +Q +D EL +I  + +  +FL +
Sbjct: 267  E----TPMSYLRVLVERGKQARFPQGV------PRDIQQIIDKELGLIGELNYPFFFLTI 316

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +AK   I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+
Sbjct: 317  HDIVMFAKSQGILY-QGRGSAANSVVCYCLEITSVDPRQISVLFERFISKERDEPPDIDV 375

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF  +RR+EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  +Q+D   K   
Sbjct: 376  DFEHERREEVIQYIYQKYGRERAALAATVISYRFKSAVRDVGKALGLQETQLDYFIKNTN 435

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                       +         +       + + +  ++ G  RH S H  G VI   PL 
Sbjct: 436  RRDKSLGWQAQLTQ----LGLQPDSLKGQQFIHLVNEIIGFPRHLSQHVGGFVISSGPLY 491

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVD 597
            +LVP+      D  + Q++   +E  GL+K D L L  L+ ++K  D + +   R + + 
Sbjct: 492  ELVPVENAAMHDRTIIQWDKDDLETLGLLKVDVLALGMLSAIRKCFDLIKRIHGRSLTIA 551

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                  DD + Y ++    T+GIFQ+ES      L  ++P    D++  +++ RPGPI  
Sbjct: 552  EITRLKDDPQVYCMIQRADTVGIFQIESRAQMSMLPRLKPRTYYDLVIQIAIVRPGPIQG 611

Query: 658  IVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V+    R++G E I      ++ +L  T GV I+QEQV+++A + +G++  EAD LRR
Sbjct: 612  DMVHPFLKRRDGIEPISYPSKDVESVLSRTLGVPIFQEQVIKLAMVAAGFTGGEADQLRR 671

Query: 716  AMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AM    K   + K K + I G  K G     A  IF+ +  F +YGF +SH+A++AV++Y
Sbjct: 672  AMAAWKKNGNVFKFKNKLIEGMQKRGYETEFAEQIFKQICGFGEYGFPESHSASFAVLAY 731

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN- 833
             +AW+K +YP  F A+ +  +        +  QDA++ N+ ++P  VN    +  V ++ 
Sbjct: 732  CSAWLKYYYPECFYASLLNSQPMGFYSPSQLVQDAQRHNVVVLPVCVNASQDNHIVVEHQ 791

Query: 834  ---RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                I   L  IKG      + ++       +         V    +N++ +E L  A A
Sbjct: 792  NGLAIRLGLRQIKGFSEHGIQSVLANRPQSGYRHPSQ----VKQLSMNKKDIELLASANA 847

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            L+     R Q   ++ +            +     +F+                  N   
Sbjct: 848  LNNVSGDRFQTRWAIMD------------SASDLPLFSQAYDDAEAGHDEHALHKPNEMQ 895

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                +   +G   + HP+ + +   R       ++ +     + + +  +V  KQ   T 
Sbjct: 896  DLLEDFTSVGISLNKHPITLLEEAGRLGRFTHMKDLIQQRHKSMVTVVGLVTGKQSPGTA 955

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
             G  + +VT  +         +
Sbjct: 956  AG--VTFVTLEDNTGNINVVVW 975


>gi|27366263|ref|NP_761791.1| DNA polymerase III subunit alpha [Vibrio vulnificus CMCP6]
 gi|71151842|sp|Q8D8I6|DNAE2_VIBVU RecName: Full=Error-prone DNA polymerase
 gi|27362464|gb|AAO11318.1| DNA polymerase III alpha subunit [Vibrio vulnificus CMCP6]
          Length = 1024

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 238/1036 (22%), Positives = 416/1036 (40%), Gaps = 83/1036 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQ 68
            +  L   S++S L GA     ++ +       ++AITD  +L   +            ++
Sbjct: 3    YAELFCQSNFSFLTGASHPEELIVQANFLGYHSLAITDECSLAGIVRAHSAIKQHQLSVK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G    ++ +                   VLL    E Y  L  +++      + K  
Sbjct: 63   QIVGSFFKLNTE----------------CQFVLLCPNREAYAELCRIITNARRRCE-KGQ 105

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             ++    +  +    LI L  G +               E+      +    RL++ LQR
Sbjct: 106  YQLSQWDVMSLKHCLLIWLPTGQTSD-------------EQWATWLSRYQQSRLWLGLQR 152

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H R  D +       LA   +LP+ A    L    E       L A+ H   V Q     
Sbjct: 153  HLRHDDEHYLHHCQTLANQFDLPITACGGVLMHRPERLPLQHTLTAIRHGCTVEQLGTQL 212

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +T         + +            ++ IA  CSF L       P  +  +        
Sbjct: 213  LTNAEQSLRSEKKLRKLFKPQWLA-ESLYIASLCSFDLDSLRYEYPSELIPDG----YTP 267

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++ L +    G ++R  +G            Q +  EL +I   K+  +FL + D + +A
Sbjct: 268  DSYLEHLVEQGKKLRFPEGV------PDAIEQTIQKELALIKEQKYPFFFLTIHDIVMFA 321

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+  I    GRGS A SV  Y L IT +DP + ++LFERF++ +R   PD D+DF  +RR
Sbjct: 322  KQQGILY-QGRGSAANSVVCYCLQITSVDPRQIAVLFERFISKERDEPPDIDVDFEHERR 380

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KYG +R A   T  S + K+A+R VG+AL +  +Q+D   K I        
Sbjct: 381  EEVIQYIYQKYGRQRAALAATVISYRFKSAVRQVGKALGIEETQLDFFLKNINRRDRQAG 440

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                + +       +         +++ +++ G  RH S H  G VI   PL +LVP+  
Sbjct: 441  WQAQLVE----LGLQPDSLKGQHFIQLVEEIIGFPRHLSQHVGGFVISSGPLYELVPVEN 496

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV---DLSLIPFD 604
                +  + Q++   +E   L+K D L L  LT ++K    + Q   +           D
Sbjct: 497  AAMPERTIIQWDKDDLESLKLLKVDVLSLGMLTAIRKCFLSIEQHHQQRLSIADITRRQD 556

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662
            D   Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI   +V+   
Sbjct: 557  DQAVYKMIQKADTIGVFQIESRAQMSMLPRLKPACYYDLVIQIAIVRPGPIQGDMVHPFL 616

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R++G+E I      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM    K
Sbjct: 617  KRRDGEEPISYPSVHVQEVLERTLGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMAAWKK 676

Query: 723  E-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               + K K + I+G  + G     A  IFE +  F +YGF +SH+A++AV++Y +AW+K 
Sbjct: 677  NGHVFKFKTKLINGMLERGYELDFAERIFEQICGFGEYGFPESHSASFAVLAYCSAWLKH 736

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-----KVGDNRIY 836
            +YP EF  A +  +        +  QDA++  I ++P  VN    +        G+  I 
Sbjct: 737  YYPAEFYTALLNSQPMGFYSPSQLVQDAKRHGIAVLPICVNFSNAEHQLVRLTSGELAIR 796

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
                 IKG+       ++     + +  + +    +       + ++SL  A A      
Sbjct: 797  LGFNLIKGLSHEGITRLLTHRPAQGYQCISEVKQILRQA----KDIQSLASANAFYQLAD 852

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R      + +                  +F       ++          +       + 
Sbjct: 853  NRYLARWQVMDNLDE------------LPLFQTLPSISNN-----PLPKPSDYQNVLEDY 895

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
               G   + HP+ + +            +       + + +  +V  KQ   T  G  + 
Sbjct: 896  AATGLSLAEHPVAMLEKAGGLTRFTRANQLNQCSHRSLVTVIGLVTGKQSPGTAAG--VT 953

Query: 1017 WVTFSEPAKEYEANFF 1032
            + T  +         +
Sbjct: 954  FFTLEDDTGNINVVVW 969


>gi|86148598|ref|ZP_01066882.1| putative DNA polymerase III alpha chain [Vibrio sp. MED222]
 gi|85833627|gb|EAQ51801.1| putative DNA polymerase III alpha chain [Vibrio sp. MED222]
          Length = 1030

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 249/1041 (23%), Positives = 429/1041 (41%), Gaps = 79/1041 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   +  L   S+YS LEGA     ++ +    +  A+A+TD  ++   ++       
Sbjct: 1    MSQQ--YSELFCQSNYSFLEGASHAEELVLQADFLRYKALAVTDECSVAGIVKVHSAIKQ 58

Query: 65   AG--IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                ++ I+G    ++ +                  +VLL    E Y  L  +++     
Sbjct: 59   HKLSLKQIVGSMFWLNEE----------------CQVVLLCPNREAYAELCRIITNARRR 102

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                      LS    +  +   +L           +F               +    RL
Sbjct: 103  S---SKGHYQLSEWDIMSAKHCFIL-----------WFPQQKNEDAHWGQWLSQHHSGRL 148

Query: 183  YVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++ LQRH +  D+      V+L+  H+LP+ A    L  +         L A+ +   ++
Sbjct: 149  WIGLQRHLKQTDQQYTDYCVELSQHHQLPITACGGVLMHNANRLPLQHSLTAIKYQQPIT 208

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            +     +  +     RS          E LE +  IA  C F L       P  +  + +
Sbjct: 209  EVGNHLL-ANAERCLRSINKISHIFKAEWLEESNRIAELCEFDLDSLRYEYPSELIPQGE 267

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                   + LR     G   R  QG         D +Q +D EL +I  + +  +FL + 
Sbjct: 268  ----TPMSYLRMLVEKGKRARFPQGV------PNDIQQIIDKELRLIDALDYPFFFLTIH 317

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +AK   I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+D
Sbjct: 318  DIVIFAKSQGILY-QGRGSAANSVVCYCLEITSVDPRQISVLFERFISKERDEPPDIDVD 376

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  +Q+D   K    
Sbjct: 377  FEHERREEVIQYIYKKYGRERAALAATVISYRFKSAVRDVGKALGLQETQLDYFIKNTNR 436

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                      +         +       + + +  ++ G  RH S H  G VI   PL +
Sbjct: 437  RDKSLGWQAQLTQ----LGLQPDSLKGQQFIHLVNEIIGFPRHLSQHVGGFVISSGPLYE 492

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVDL 598
            LVP+      D  + Q++   +E  GL+K D L L  L+ ++K  D + +   R + +  
Sbjct: 493  LVPVENAAMHDRTIIQWDKDDLETLGLLKVDVLALGMLSAIRKCFDLIKRIHGRSLTIAE 552

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
                 DD + Y ++    T+GIFQ+ES      L  ++P    D++  +++ RPGPI   
Sbjct: 553  ITRLKDDPQVYGMIQRADTVGIFQIESRAQMSMLPRLKPRTYYDLVIQIAIVRPGPIQGD 612

Query: 659  VVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V+    R++G E I      ++ +L  T GV I+QEQV+++A + +G++  EAD LRRA
Sbjct: 613  MVHPFLKRRDGIEPISYPSKDVESVLSRTLGVPIFQEQVIKLAMVAAGFTGGEADQLRRA 672

Query: 717  MGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M    K   + K K + I G  K G     A  IF+ +  F +YGF +SH+A++AV++Y 
Sbjct: 673  MAAWKKNGNVFKFKNKLIEGMQKRGYETEFAEQIFKQICGFGEYGFPESHSASFAVLAYC 732

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----G 831
            +AW+K +YP  F  + +  +        +  QDA++ N+ ++P  VN    +  V     
Sbjct: 733  SAWLKCYYPECFYTSLLNSQPMGFYSPSQLVQDAQRHNVVVLPVCVNASQDNHTVIAHQN 792

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I   L  IKG      + ++       +         V    +N++ +E L  A AL
Sbjct: 793  GLAIRLGLRQIKGFSEHGIQSVLANRPQSGYRHPSQ----VKQLSMNKKDIELLASANAL 848

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
                  R Q   ++ +            +     +F+       D          N    
Sbjct: 849  HNVSGDRFQTRWAIMD------------SASDLPLFSQVYDDVGDGHDEHALHKPNEMQD 896

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +   +G   + HP+ + +   R       ++ +     + + +  +V  KQ   T  
Sbjct: 897  LLEDFTSVGISLNKHPITLLEEAGRLGRFTHMKDLIQQRHKSMVTVVGLVTGKQAPGTAA 956

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G  + +VT  +         +
Sbjct: 957  G--VTFVTLEDNTGNINVVVW 975


>gi|314923721|gb|EFS87552.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL001PA1]
          Length = 1031

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 272/1029 (26%), Positives = 438/1029 (42%), Gaps = 105/1029 (10%)

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++ 
Sbjct: 2    AEAAEACGLSTIIGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTD 56

Query: 119  MYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             YL++ G K      L  L E+      +LTG   G + +         AE  L     L
Sbjct: 57   AYLVEGGHKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVRGMP-QAEAELRRLVDL 115

Query: 178  FG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG D + V L  HR   D      + +LA  H L  VAT  + +   E +E    L AV 
Sbjct: 116  FGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLSTVATTAAHYAGGEQFELACALSAVR 175

Query: 236  HSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                + + D          L++ +EM  +FS   +A++NTV +A R +F L+   P LP 
Sbjct: 176  ARRSLDEMDGWLPPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLKSVRPRLPD 235

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                +         + LR+    G         +A        + RL  EL++I    F+
Sbjct: 236  QKVPDG----HTPISWLRHLVEEGRRACYGDDPVA--------KDRLATELDLIEDRGFA 283

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV+D  ++A+   I    GRGS A S   Y L IT +DP+ + L FERFL+  R  
Sbjct: 284  GYFLIVSDIAEFAQSQGIL-CQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREE 342

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D 
Sbjct: 343  EPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAIRDMAKALGYSQGQQDA 402

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
              + +      P+                     D +  ++Q++ GL RH   H+AG+V+
Sbjct: 403  WSRQMERRSVPPLPHDP-----------DGPEIPDDVTTLAQQVMGLPRHLGIHSAGMVL 451

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D ++Q   
Sbjct: 452  TREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCG 511

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ IP ++   Y +L    ++G+FQ+ES      L  ++P C  D+   + L RPG
Sbjct: 512  RFWTLASIPRNEPGVYDMLCRGDSVGVFQVESRAQIGVLPRLRPRCFYDLAVEIGLIRPG 571

Query: 654  PID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+    +  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD
Sbjct: 572  PVQGGAVHPYIRRRTGAEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADAD 631

Query: 712  VLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            +LRRAM  K+  E ++  + +   G + NGI    A  I+  +  FA++GF +SHA ++A
Sbjct: 632  LLRRAMGSKRGVERINSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFA 691

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--- 827
             + Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V    
Sbjct: 692  GLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADL 751

Query: 828  ---------------------------------FKVGDN----------RIYYSLAAIKG 844
                                             F    +           +   L+ + G
Sbjct: 752  ELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSG 811

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +   TA  I+E    + F SL+D   RVD        +E+L  AGA D    SR   L  
Sbjct: 812  INIETATRIVEERERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQ 868

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +  I          +      +                           ++ R  G   +
Sbjct: 869  IGQINGVGPGQLDVQVVTQPPL----------------LPEPTQMELLGDDLRATGISTA 912

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+   +  L + G+   +       G  + +A +V  +Q+  T  G  + ++   +  
Sbjct: 913  DHPVRQVRDALNRRGVVRVDRLDGVESGRRVEVAGVVTHRQRPGTAGG--VTFLNLEDET 970

Query: 1025 KEYEANFFP 1033
                    P
Sbjct: 971  GLLNVIVTP 979


>gi|314981796|gb|EFT25889.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL110PA3]
 gi|315091577|gb|EFT63553.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL110PA4]
          Length = 1031

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 272/1029 (26%), Positives = 439/1029 (42%), Gaps = 105/1029 (10%)

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++ 
Sbjct: 2    AEAAEACGLSTIIGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTD 56

Query: 119  MYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             YL++ G K      L  L E+      +LTG   G + +         AE  L     L
Sbjct: 57   AYLVEGGHKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVRGMP-QAEAELRRLVDL 115

Query: 178  FG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG D + V L  HR   D      + +LA  H L  VAT  + +   E +E    L AV 
Sbjct: 116  FGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLSTVATTAAHYAGGEQFELACALSAVR 175

Query: 236  HSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                + + D          L++ +EM  +FS   +A++NTV +A R +F L+   P LP 
Sbjct: 176  ARRSLDEMDGWLPPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLKSVRPRLPD 235

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                +         + LR+    G         +A        + RL  EL++I    F+
Sbjct: 236  QKVPDG----HTPISWLRHLVEEGRRACYGDDPVA--------KDRLATELDLIEDRGFA 283

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV+D  ++A+   I    GRGS A S   Y L IT +DP+ + L FERFL+  R  
Sbjct: 284  GYFLIVSDIAEFAQSQGIL-CQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREE 342

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D 
Sbjct: 343  EPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAIRDMAKALGYSQGQQDA 402

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
              + +      P+                     D +  ++Q++ GL RH   H+AG+V+
Sbjct: 403  WSRQMERRSVPPLPHDP-----------DGPEIPDDVTTLAQQVMGLPRHLGIHSAGMVL 451

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D ++Q   
Sbjct: 452  TREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCG 511

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ IP ++   Y +L    ++G+FQ+ES      L  ++P C  D+   + L RPG
Sbjct: 512  RFWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGVLPRLRPRCFYDLAVEIGLIRPG 571

Query: 654  PID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+    +  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   ++++AD
Sbjct: 572  PVQGGAVHPYIRRRTGAEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTVADAD 631

Query: 712  VLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            +LRRAM  K+  E ++  + +   G + NGI    A  I+  +  FA++GF +SHA ++A
Sbjct: 632  LLRRAMGSKRGVERINSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFA 691

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--- 827
             + Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V    
Sbjct: 692  GLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADL 751

Query: 828  ---------------------------------FKVGDN----------RIYYSLAAIKG 844
                                             F    +           +   L+ + G
Sbjct: 752  ELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSG 811

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +   TA  I+E    + F SL+D   RVD        +E+L  AGA D    SR   L  
Sbjct: 812  INIETATRIVEERERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQ 868

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +  I          +      +                           ++ R  G   +
Sbjct: 869  IGQINGVGPGQLDVQVVTQPPL----------------LPEPTQMELLGDDLRATGISTA 912

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+   +  L + G+   +       G  + +A +V  +Q+  T  G  + ++   +  
Sbjct: 913  DHPVRQVRDALNRRGVVRVDRLDGVESGRRVEVAGVVTHRQRPGTAGG--VTFLNLEDET 970

Query: 1025 KEYEANFFP 1033
                    P
Sbjct: 971  GLLNVIVTP 979


>gi|319651827|ref|ZP_08005952.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
 gi|317396479|gb|EFV77192.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
          Length = 923

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 335/816 (41%), Positives = 494/816 (60%), Gaps = 21/816 (2%)

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
              +ED  AH+ L+A+ +   +  + R R  + ++YLK+  EM  + S  P+ALENT++IA
Sbjct: 3    HKKEDAFAHECLLAIKNGEKLQDEARERLKSDEYYLKSSGEMAELLSGYPDALENTIKIA 62

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
             +C+ +L++    LP++   +        +  L      G   R             ++R
Sbjct: 63   EQCNVMLELDKQNLPKYPAVKGM----SADELLAEVCWKGFADRYPDADG-------EHR 111

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RL +ELN+I  MKFS YFLIV DF++++++N I  GPGRGS AGS+ AY L ITD+DP+
Sbjct: 112  ERLQYELNIIKNMKFSDYFLIVWDFMKFSRENGILTGPGRGSAAGSMVAYVLYITDVDPI 171

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               LLFERFLNP+R+SMPD DIDF   RRDEVIRYV  KYG   VAQI+TFG+L AKAAL
Sbjct: 172  EHQLLFERFLNPERISMPDIDIDFPDHRRDEVIRYVSRKYGELHVAQILTFGTLAAKAAL 231

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
            RDVGRA  +   ++D L + +P+     +       +   R          RL E + KL
Sbjct: 232  RDVGRAFGLNPKELDMLSRKVPSKLGISLKEAYKESEP-LRRFTEESDLNRRLFETAIKL 290

Query: 519  EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
            EGL RH STHAAG+VI + PL + +P+ +    ++ +TQ++M+ +E  GL+K DFLGL+ 
Sbjct: 291  EGLPRHTSTHAAGVVISEHPLVEAIPIQKG-HENVYLTQYSMEHLEDVGLLKMDFLGLRN 349

Query: 579  LTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
            LTL++  L     + G ++D+  IP DD   Y LL    T GIFQLES GMR  L  +QP
Sbjct: 350  LTLIENILSSIQRKTGTQIDIKNIPLDDEAVYSLLGRGDTTGIFQLESEGMRSVLTRLQP 409

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
               EDI+A+ +LYRPGP++NI ++ +RK+G++ I+  HP + P+L+ T GVI+YQEQ+MQ
Sbjct: 410  TRFEDIVAVNALYRPGPMENIPLFIDRKHGRKPIIFPHPDLKPILENTYGVIVYQEQIMQ 469

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            IA  ++G+SL EAD+LRRA+ KK KE +D+++  F+ GA K G ++  A +I++L+ +FA
Sbjct: 470  IAAKMAGFSLGEADLLRRAVSKKQKEVLDRERVHFVGGAVKKGYNEQAAHDIYDLIVRFA 529

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            +YGFN+SHA AY+ I+YQ A++KTHYP+ F+A+ +T  + N  +I ++  + RQ  + + 
Sbjct: 530  NYGFNRSHAVAYSFIAYQLAYLKTHYPLYFMASLLTSAVGNEGRIAQYIGELRQMGLALS 589

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            PPS+N     F V  + I YSLAAIKGVG    R I +A  +K F+ L DFC RV +K +
Sbjct: 590  PPSINKSGYSFLVEKDSIRYSLAAIKGVGAAALRDIFQARKNKRFEDLFDFCIRVSTKAV 649

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            NR+VLESLV +G+ D FG  R  LL SLD   ++AQ V     +   + F  ++  F  K
Sbjct: 650  NRKVLESLVHSGSFDEFGEDRAVLLASLDVAAEHAQLVMPE--DDQADFFEDDE--FFPK 705

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
                +     S  +   E+ VLG Y S HP+ +Y+     +      E       N  + 
Sbjct: 706  PKYTEVDPIRSEDKLRFEKDVLGLYLSDHPVSIYESSFHLLDASPLIELE--RNANKAKT 763

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             A +   ++ +T+KG  + +++ S+   + EA  FP
Sbjct: 764  VAYLSEVKKIRTKKGEPMAFLSLSDQTGDMEAVVFP 799


>gi|218709034|ref|YP_002416655.1| putative DNA polymerase III subunit alpha [Vibrio splendidus LGP32]
 gi|218322053|emb|CAV18108.1| putative DNA polymerase III alpha chain [Vibrio splendidus LGP32]
          Length = 1030

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 246/1041 (23%), Positives = 431/1041 (41%), Gaps = 79/1041 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            + +   +  L   S+YS LEGA     ++ +    +  A+A+TD  ++   ++       
Sbjct: 1    MSQQ--YSELFCQSNYSFLEGASHAEELVLQADFLRYKALAVTDECSVAGIVKVHSAIKQ 58

Query: 65   AG--IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                ++ I+G    ++ +                  +VLL    + Y  L  +++     
Sbjct: 59   HKLSLKQIVGSMFWLNEE----------------CQVVLLCPNRQAYAELCRIITNARRR 102

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                      LS    +  +   +L           +                +    RL
Sbjct: 103  S---SKGHYQLSEWDIMSAKHCFIL-----------WLPQQKNEDAHWGQWLSQHHSGRL 148

Query: 183  YVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
            ++ LQRH +  D++     V+L+  H+LP+ A    L  +         L A+ +   ++
Sbjct: 149  WIGLQRHLKQTDQHYTDYCVELSQHHQLPITACGGVLMHNANRLPLQHSLTAIKYQRPIT 208

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            +     +  +     RS          E LE +  I+  C F L       P  +  + +
Sbjct: 209  EVGSHLL-ANAERCLRSINKLSHIFKAEWLEESNRISELCEFELDNLRYEYPSELIPQGE 267

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                   + LR     G   R  QG         + +Q ++ EL +I  + +  +FL + 
Sbjct: 268  ----TPMSYLRMLVEKGKRTRFPQGV------PNNIQQIIEKELGLIDELDYPFFFLTIH 317

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D + +AK   I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+D
Sbjct: 318  DIVMFAKSQGILY-QGRGSAANSVVCYCLEITSVDPRQISVLFERFISKERDEPPDIDVD 376

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  +Q+D   K    
Sbjct: 377  FEHERREEVIQYIYKKYGRERAALAATVISYRFKSAVRDVGKALGLQETQLDYFIKNTNR 436

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                      +         +       + + +  ++ G  RH S H  G VI   PL +
Sbjct: 437  RDKSLGWQAQLTQ----LGLQPDSLKGQQFIHLVNEIIGFPRHLSQHVGGFVISSGPLYE 492

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVDL 598
            LVP+      D  + Q++   +E  GL+K D L L  L+ ++K  D + +   R + +  
Sbjct: 493  LVPVENAAMHDRTIIQWDKDDLETLGLLKVDVLALGMLSAIRKCFDLIKRIHGRSLTIAE 552

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
                 DD + Y ++    T+GIFQ+ES      L  ++P    D++  +++ RPGPI   
Sbjct: 553  ITRLKDDPQVYGMIQRADTVGIFQIESRAQMSMLPRLKPRTYYDLVIQIAIVRPGPIQGD 612

Query: 659  VVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +V+    R++G E I      ++ +L  T GV I+QEQV+++A + +G++  EAD LRRA
Sbjct: 613  MVHPFLKRRDGIEPISYPSKDVESVLSRTLGVPIFQEQVIKLAMVAAGFTGGEADQLRRA 672

Query: 717  MGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M    K   + K K + I G  K G     A  IF+ +  F +YGF +SH+A++AV++Y 
Sbjct: 673  MAAWKKNGNVFKFKNKLIEGMQKRGYETGFAEQIFKQICGFGEYGFPESHSASFAVLAYC 732

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----G 831
            +AW+K +YP  F A+ +  +        +  QDA++ N+ ++P  VN    +  V     
Sbjct: 733  SAWLKCYYPECFYASLLNSQPMGFYSPSQLVQDAQRHNVVVLPVCVNASQDNHTVIAHQN 792

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
               I   L  IKG      + ++       +         V    +N++ +E L  A AL
Sbjct: 793  GLAIRLGLRQIKGFSEHGIQSVLANRPQSGYRHPSQ----VKQLSMNKKDIELLASANAL 848

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
                  R Q   ++ +            +     +F+   G   D          N    
Sbjct: 849  HNVSGDRFQTRWAIMD------------SASDLPLFSQVYGDVGDGHDEHALHKPNEMQD 896

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               +   +G   + HP+ + +   R       ++ +     + + +  +V  KQ   T  
Sbjct: 897  LLEDFTSVGISLNKHPITLLEEAGRLGRFTHMKDLIQQRHKSMVTVVGLVTGKQAPGTAA 956

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
            G  + +VT  +         +
Sbjct: 957  G--VTFVTLEDNTGNINVVVW 975


>gi|301330018|ref|ZP_07222702.1| DNA polymerase III, alpha subunit [Escherichia coli MS 78-1]
 gi|300843929|gb|EFK71689.1| DNA polymerase III, alpha subunit [Escherichia coli MS 78-1]
          Length = 742

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 322/759 (42%), Positives = 466/759 (61%), Gaps = 34/759 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHL 611
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDM 583

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKE 669
           L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E
Sbjct: 584 LQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE 643

Query: 670 KIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EE
Sbjct: 644 EISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 703

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
           M KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNK
Sbjct: 704 MAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNK 742


>gi|302037566|ref|YP_003797888.1| DNA polymerase III subunit alpha [Candidatus Nitrospira defluvii]
 gi|300605630|emb|CBK41963.1| DNA polymerase III, alpha subunit [Candidatus Nitrospira defluvii]
          Length = 1033

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 278/1046 (26%), Positives = 466/1046 (44%), Gaps = 111/1046 (10%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  FVHL  HSSYS + G  +L  +        Q  +A+TDTN L+ A+ F + A  AG+
Sbjct: 2    SSGFVHLHTHSSYSPMWGIPTLEALCQAARTQGQDRLALTDTNGLYGAIRFLEVAQHAGL 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            +PIIG +L                        VLL  T  GY  L  L+S  +       
Sbjct: 62   KPIIGAEL-----------------VHEAHRAVLLAKTPAGYANLCRLLSVRHEESTFD- 103

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
                C++ +      GLI+L+   S                  L  ++K   + LYV L 
Sbjct: 104  ----CIAAVARYRA-GLIILSDDLS-----------------ALRAWRKDSQEDLYVELS 141

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                         +  +  + LP VAT  + FL   D+E H +L A+A +T +S+    R
Sbjct: 142  PGSDIQEA-----LTFSRGNRLPPVATTRAAFLHPADFETHRLLRAIADNTTLSRLRPER 196

Query: 248  VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               P H+L + + +      + EAL N+  IA  C         I P F +       + 
Sbjct: 197  CCAPSHWLMSPAGIERYLPHVSEALTNSRRIADDCFTDWTFKETIFPSFRQL----STEA 252

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                LR K   G +          G  ++  R R++ EL VI   +++ YFL+V + ++ 
Sbjct: 253  AFESLRTKTYEGAQR-------RYGTLSEAVRHRIEVELAVIREKRYADYFLVVDEIVRE 305

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            A     P   GRGS A S+ +Y L IT +DP+R +LLFERFLNP R   PD DIDF  D 
Sbjct: 306  A-----PRTCGRGSAAASIVSYCLGITHVDPIRHNLLFERFLNPGRHDPPDIDIDFPWDE 360

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN---DP 483
            R +++ +V  +YG ++ A +    +L A+AA+R++ +   +P +++ +   L+       
Sbjct: 361  RPKILEWVFARYGAQQAAMVANQNTLAARAAMREIAKVYGLPAAEIGKALDLLHRRADFV 420

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                +       S    A    P    +L  + +L+G +RH S H  G+V+    + + V
Sbjct: 421  NVTENSTLQTWASEVCRALQLRPPWPDILFRAGQLQGHFRHLSLHPGGVVLVPDEIRRYV 480

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK--VDLSLI 601
            P+     S  PV Q+     E AGL+K D LG ++L +++ +L  +     +        
Sbjct: 481  PVET-SASGWPVIQWEKDQAEDAGLVKIDLLGNRSLAVIRDALAAVHHNTGRLIDYELWD 539

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMR----------QALEGMQPDCIEDIIALVSLYR 651
            P  D  T  L+    T+G F +ES   R                  D  E ++ + S+ R
Sbjct: 540  PISDPVTRELIRRGETMGCFYVESPATRLLLKKLWTTMPQARRAHADVFEYLVVVSSIIR 599

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P        +  R +G     S HPL+D +L ET G+++YQE VM++A  L G+SL + D
Sbjct: 600  PAANVYADDFVRRSHG-HPYRSWHPLLDEVLAETHGIMVYQEDVMKVAVALGGFSLHDGD 658

Query: 712  VLRRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             LR+ + KK KE      + +F  GA+   + ++    I+ ++  F+ Y F K H+A+YA
Sbjct: 659  QLRKILSKKHKERQLRDYQRQFYEGAAARDVHRSTIDKIWAMIMSFSGYSFCKPHSASYA 718

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             +S+++A+++ HYP EFLAA ++ +         +  + R+  + I+PP +N     ++ 
Sbjct: 719  QVSFKSAYLRAHYPAEFLAAVISNQ-GGYYSAFAYLSEGRRMGLTILPPDINVSDWPYRG 777

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             +  +   L  +K +    A+ I+    D   + SL+DF  RV+ +         L+ AG
Sbjct: 778  SNRAVRVGLMQLKALRKEFAQRIVVERQDHGAYRSLQDFLVRVNPEI---AQATLLIKAG 834

Query: 890  ALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
              D      +R  L+                       +FA + G  +  + +      +
Sbjct: 835  CFDSIAGELTRPALIWR---------------------LFAAQSGKPAGYLPIP--PDYS 871

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
               +  +E  + GF  S HPL+++K ++  +      +  A   G ++ L   +V+++  
Sbjct: 872  PQQKLSHELELFGFPLSEHPLELFKDVVASLSYLPARDL-AKHVGKHVTLLGWIVTEKIV 930

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             T++G  + +VTF +    Y+A FFP
Sbjct: 931  STKQGEPMEFVTFEDQTSLYDATFFP 956


>gi|326445257|ref|ZP_08219991.1| DNA polymerase III subunit alpha [Streptomyces clavuligerus ATCC
            27064]
          Length = 1141

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 253/1058 (23%), Positives = 443/1058 (41%), Gaps = 60/1058 (5%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F HL V S +S   GA    +++ + A      +A+TD +    A+  ++    AGI+P
Sbjct: 3    AFTHLHVASGFSARYGASHPQDLVRRAAGLGMGVLALTDRDTAAGAVRHAKACRDAGIRP 62

Query: 70   IIGCQLDIDMQD--------NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            + G  L +                   G         + LL  +A G+ ++  L+S  + 
Sbjct: 63   LFGVDLAVAAHGTATRPPRRPRTPVRGGAHVAEPRLRVTLLARSATGWAQICRLISAAHA 122

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                          L+E   + +++L G +S P+ RA       +A++ L  +++  GD 
Sbjct: 123  R-PVDGFPAASREALRECLGKDVMVLLGPASEPV-RALAAGRGDLAQRLLAPWQEAAGDG 180

Query: 182  LYVNLQRHRGY-----DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
            L +    +             +  + L     +P V TN   +   E +   DVL A   
Sbjct: 181  LRLEAVAYGLPGLGPGSTRLAAHTLALGDRLGIPAVLTNAVRYERREQHRLADVLDAARL 240

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI----- 291
               V ++        +                 A        R      +V A       
Sbjct: 241  LRPVPRRGVLDPGERYLKSGPEMAEVAARVAAAAGAPAARGRRLLGETAEVAAQCEVDPV 300

Query: 292  ------LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
                   P F E +      E  + +R           A   +           +L  EL
Sbjct: 301  RDLGLGRPHFPEPQVVGAGAEPGDGMRLLR----RRCEAGMTVRGLDRDARALDQLHHEL 356

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
             VI ++ +  YFL VA  +   +   I V   RGSGAGS+  ++L I   +PL   LLFE
Sbjct: 357  AVIEQLGYEAYFLAVAQVVADTRAMGIRVA-ARGSGAGSMVNHSLFIATANPLEHRLLFE 415

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RFL+  R ++PD D+D    RR EV   +  ++G ERVA      + +A+ ALRD G AL
Sbjct: 416  RFLSARRRTLPDIDLDVESHRRLEVYDRIFERFGSERVAVTGMPETYRARHALRDTGLAL 475

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
             +    VDR+ K  P+  A  +   A+A+    R+          L E+++ L+ L R  
Sbjct: 476  GIRPRTVDRIAKSFPHIRACDI-RSALAELPELRQLARHAGRFGPLWELAEGLDALPRGY 534

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            + H  G+++    L   +P+        P+ Q +   +E  GL+K D LG++  + +  +
Sbjct: 535  AMHPCGVILSSTSLLDRLPVQ-PTPGGYPMVQADKHDVEDMGLVKLDVLGVRMQSAMAHA 593

Query: 586  LDFLAQRGVKVD----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            +  + +   +         +   D +T+ L+     LG FQ+ES G++  +  +QP  ++
Sbjct: 594  VAEIRRTTGRHIDLDSPDHVDLGDEQTFALIRRGQVLGCFQIESPGVQDLIARLQPRHLQ 653

Query: 642  DIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            DIIA +SL+RPGP+   +   +   ++G E     HP + P++ +T GV+I+ EQ+M+I 
Sbjct: 654  DIIADISLFRPGPVKGGMPARFIAARHGAETPRYPHPDLVPIMDDTYGVVIWHEQIMEIL 713

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            ++L+G   + ADV RRA+    +    + +  F   A++ G +  +   +++++ +F  Y
Sbjct: 714  RVLTGCDRAAADVARRALADTERLP--RVEAWFRRCAAERGYTPAVIGEVWDIIKEFGAY 771

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GF ++HA A+AV + Q+AW+KTHYP  F A  +  +       +   QDA+QF + I+P 
Sbjct: 772  GFCRAHAVAFAVPAVQSAWLKTHYPAAFYAGLLQHDPGM-WAPRVLVQDAKQFGVTILPV 830

Query: 820  SVNTPCVDFKVG----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
             +N       V        +  +L+ I+G+ T  +  I  A   +P+  L+D   R    
Sbjct: 831  DINHSRSAHSVEQTADGWGVRLALSTIRGITTAESARIEAA---QPYTGLQDLWLRARPS 887

Query: 876  KLNRRVLESLVFAGALDCFG-YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
                 + + L+  GAL   G  +R  LL     + + A+   +   +    +     G  
Sbjct: 888  L---PLAQRLITIGALGPQGRLTRRDLLLQATELHRSARN--RTTADGQLPL-----GDE 937

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
            +                   E  VL    S H L+ +  +L ++G        A  RG  
Sbjct: 938  THAGAPAGLPEMTGRDVLNAEIDVLSIDVSRHLLEHHHRLLAELGATDAHHLQAMHRGQQ 997

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +A +  S Q      G R+ +VT  + +   +  FF
Sbjct: 998  VLVAGVRASTQTPPVPSGKRVIFVTLEDGSGLVDVAFF 1035


>gi|37679476|ref|NP_934085.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016]
 gi|71151843|sp|Q7MLY4|DNAE2_VIBVY RecName: Full=Error-prone DNA polymerase
 gi|37198220|dbj|BAC94056.1| DNA polymerase III, alpha subunit [Vibrio vulnificus YJ016]
          Length = 1024

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 238/1036 (22%), Positives = 415/1036 (40%), Gaps = 83/1036 (8%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQ 68
            +  L   S++S L GA     ++ +       ++AITD  +L   +            ++
Sbjct: 3    YAELFCQSNFSFLTGASHPEELIVQANFLGYHSLAITDECSLAGIVRAHSAIKQHQLSVK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G    ++ +                   VLL    E Y  L  +++      + K  
Sbjct: 63   QIVGSFFKLNTE----------------CQFVLLCPNREAYAELCRIITNARRRCE-KGQ 105

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             ++    +  +    LI L  G +               E+      +    RL++ LQR
Sbjct: 106  YQLSQWDVMSLKHCLLIWLPTGQTSD-------------EQWATWLSRYQQSRLWLGLQR 152

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    D +       LA   +LP+ A    L    E       L A+ H   V Q     
Sbjct: 153  HLHHDDEHYLHHCQTLANQFDLPITACGGVLMHRPERLPLQHTLTAIRHGCTVEQLGTQL 212

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +T         + +            ++ IA  CSF L       P  +  +        
Sbjct: 213  LTNAEQSLRSEKKLRKLFKPQWLA-ESLYIASLCSFDLDSLRYEYPSELIPDG----YTP 267

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++ L +    G ++R  +G            Q +  EL +I   K+  +FL + D + +A
Sbjct: 268  DSYLEHLVEQGKKLRFPEGV------PDAIEQTIQKELALIKEQKYPFFFLTIHDIVMFA 321

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+  I    GRGS A SV  Y L IT +DP + ++LFERF++ +R   PD D+DF  +RR
Sbjct: 322  KQQGILY-QGRGSAANSVVCYCLQITSVDPRQIAVLFERFISKERDEPPDIDVDFEHERR 380

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KYG +R A   T  S + K+A+R VG+AL +  +Q+D   K I        
Sbjct: 381  EEVIQYIYQKYGRQRAALAATVISYRFKSAVRQVGKALGIEETQLDFFLKNINRRDRQAG 440

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                + +       R         +++ +++ G  RH S H  G VI   PL +LVP+  
Sbjct: 441  WQVQLVE----LGLRPDSLKGQHFIQLVEEIIGFPRHLSQHVGGFVISSGPLYELVPVEN 496

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV---DLSLIPFD 604
                +  + Q++   +E   L+K D L L  LT ++K    + Q   +           D
Sbjct: 497  AAMPERTIIQWDKDDLESLKLLKVDVLSLGMLTAIRKCFRSIEQHHQQRLSIADITRRQD 556

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662
            D   Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI   +V+   
Sbjct: 557  DQAVYKMIQKADTIGVFQIESRAQMSMLPRLKPACYYDLVIQIAIVRPGPIQGDMVHPFL 616

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R++G+E I      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM    K
Sbjct: 617  KRRDGEEPISYPSVHVQEVLERTLGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMAAWKK 676

Query: 723  E-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               + K K + I+G  + G     A  IFE +  F +YGF +SH+A++AV++Y +AW+K 
Sbjct: 677  NGHVFKFKTKLINGMLERGYELDFAERIFEQICGFGEYGFPESHSASFAVLAYCSAWLKH 736

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-----KVGDNRIY 836
            +YP EF  A +  +        +  QDA++  I ++P  VN    +        G+  I 
Sbjct: 737  YYPAEFYTALLNSQPMGFYSPSQLVQDAKRHGIAVLPICVNFSNPEHQLVRLTSGELAIR 796

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
                 IKG+       ++     + +  + +    +       + ++SL  A A      
Sbjct: 797  LGFNLIKGLSHEGITRLLTHRPAQGYQCISEVKQILRQA----KDIQSLASANAFYQLAD 852

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R      + +                  +F       ++          +       + 
Sbjct: 853  NRYLARWQVMDNLDE------------LPLFQTLPSISNN-----PLPKPSDYQNVLEDY 895

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
               G   + HP+ + +            +       + + +  +V  KQ   T  G  + 
Sbjct: 896  AATGLSLAEHPVAMLEKAGGLTRFTRANQLNQCSHRSLVTVIGLVTGKQSPGTAAG--VT 953

Query: 1017 WVTFSEPAKEYEANFF 1032
            + T  +         +
Sbjct: 954  FFTLEDDTGNINVVVW 969


>gi|261253395|ref|ZP_05945968.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891]
 gi|260936786|gb|EEX92775.1| DNA polymerase III alpha subunit [Vibrio orientalis CIP 102891]
          Length = 1023

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 252/1036 (24%), Positives = 422/1036 (40%), Gaps = 82/1036 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA--GI 67
            ++  L   S++S L GA     ++ +    +  ++AITD  ++   +            I
Sbjct: 2    AYAELFCQSNFSFLTGASHAQELILQADFLRYHSLAITDECSVAGVVRAYSAIKNQQLNI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + IIG    ++ +                  +VL+  + E Y  L  +++      + K 
Sbjct: 62   KLIIGSMFWLNEE----------------CQVVLICPSREAYAELCRIITNARRRSE-KG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              ++    L  I    ++ L                    +K      +    RL++ +Q
Sbjct: 105  QYQLSEWDLMSIRHCFVLWLPCHKPSD-------------KKWGHWLAQQHQHRLWLAVQ 151

Query: 188  RHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH    D+       QLA    LP+ A    L  +         L A+ H   V++    
Sbjct: 152  RHLSCDDKQYLEYCQQLAEQLHLPITACGGVLMHTATRLPLQHTLTAIKHGCSVNELGEQ 211

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +T         E +S           +V IA RCSF L+      P  +  +       
Sbjct: 212  LLTNTERSLRSQEKLSKLFKPEWLA-ESVAIAERCSFSLKELQYEYPSELVPDG----YS 266

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR     G + R  +G         D +Q ++ EL +I  + +  YFL + D + +
Sbjct: 267  PMSYLRQLVETGKKRRFPEGV------PSDIQQTINKELCLIEELNYPFYFLTIHDIVMF 320

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+++I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +R
Sbjct: 321  AKRHHILY-QGRGSAANSVVCYCLEITAVDPRQISVLFERFISKERDEPPDIDVDFEHER 379

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  SQ+D   K +       
Sbjct: 380  REEVIQYIYQKYGRERAALAATVISYRFKSAVRDVGKALGIEESQLDYFIKNVNRRDRAQ 439

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                 I +    +   L       L+          RH S H  G +I   PL +LVP+ 
Sbjct: 440  GWQAQIVELG-LQPDSLKGEQFITLINDILGF---PRHLSQHVGGFIIAAGPLYELVPVE 495

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---VDLSLIPF 603
                +D  V Q++   +E   L+K D L L  L+ ++K  + + +   +   +       
Sbjct: 496  NASMADRTVIQWDKDDLESLKLLKVDVLALGMLSAIRKCFNLVEKYHQQSLSIAEITRRQ 555

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD   Y ++    T+G+FQ+ES      L  ++P    D++  +++ RPGPI   +V+  
Sbjct: 556  DDANVYQMIQRADTVGVFQIESRAQMSMLPRLKPATYYDLVIQIAIVRPGPIQGDMVHPF 615

Query: 664  RKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             K    +  I      +  +L+ T GV I+QEQV++IA + +G+S  EAD LRRAM    
Sbjct: 616  LKRRNGEEQINYPSEEVRSVLQRTLGVPIFQEQVIKIAMVAAGFSGGEADQLRRAMAAWK 675

Query: 722  KEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            K     K K + I G    G     A  IFE +  F +YGF +SH+A++AV++Y +AW+K
Sbjct: 676  KSGDLVKFKTKLIEGMLSRGYELEFAKRIFEQILGFGEYGFPESHSASFAVLAYCSAWLK 735

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNRIY 836
             +YP  F  + +           +  QDA +  + I+P  VN    D ++    G   I 
Sbjct: 736  HYYPEAFYTSLLNSLPMGFYSASQLVQDAHRHKVVILPICVNVSLYDHQMVSHQGGWAIR 795

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
                 IKG    +A+ ++ A A   F        ++    LNRR ++ L  A A+     
Sbjct: 796  LGFRQIKGFSPQSAKQLIHARAKSGFTH----AGQIKHIGLNRRDVDLLASANAMHTLSQ 851

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R Q   ++ +                  +F   +   +  I          S     + 
Sbjct: 852  NRYQTRWAMMDSLSD------------LPLFQDTQDDTAPLIGTP-----TESQTLLEDY 894

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
               G   + HP+ +             +E       + + +  +V  KQ   T  G  + 
Sbjct: 895  AATGLSLAKHPITLLDDAGVLGRFTRMQELKNKQHQSLVTVTGVVTGKQSPGTAAG--VT 952

Query: 1017 WVTFSEPAKEYEANFF 1032
            + T  +         +
Sbjct: 953  FFTLEDDTGNINVVVW 968


>gi|83954808|ref|ZP_00963486.1| DNA polymerase III, alpha subunit, putative [Sulfitobacter sp.
            NAS-14.1]
 gi|83840534|gb|EAP79706.1| DNA polymerase III, alpha subunit, putative [Sulfitobacter sp.
            NAS-14.1]
          Length = 1048

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 258/1019 (25%), Positives = 437/1019 (42%), Gaps = 87/1019 (8%)

Query: 39   DQQPAIAITDTNNLFSALEFSQKACA--------AGI-QPIIGCQLDIDMQDNLKMTNQG 89
                A+AITD N+L   +                A + + +IG +L +   D        
Sbjct: 1    MGLNALAITDHNSLAGVVRAYSALKELRRELGADAPLPRLVIGARLILRDSD-------- 52

Query: 90   KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEG-LIMLT 148
                      V L    E Y RL  L++        K +  + L  L +      LI   
Sbjct: 53   -------THWVALPHDREAYARLTRLLTLGKRR-APKGACYLDLPDLVQGCAGMSLIA-- 102

Query: 149  GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTH 207
                  + +A    S       + T KK F   +++ +  R+ G D+        LA+  
Sbjct: 103  ------VPQASLKASQPD----IATLKKHFPADVFIGVAPRYDGSDQRYFDACATLAHRT 152

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
              P+VA  + L       +  DVL  + H+ T+     R     +  LK  ++M  +F+ 
Sbjct: 153  AAPMVAVGDVLMHHGARRQLADVLTCLRHNITIDQIGTRALPNAEKRLKPEADMKRLFAR 212

Query: 267  LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
             P AL  T +IA R SF L   +         +     +  ++ L   A  GL+VR  +G
Sbjct: 213  HPAALRRTTQIAARSSFCLSELSYDY-----PDEIADNETPQDRLARLASEGLKVRYPKG 267

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
            A A+         +++ EL ++  + F  YFL V D +Q+A+   I    GRGS A S+ 
Sbjct: 268  APARAI------AQMEKELALVKTLDFPAYFLTVHDIVQFARSKGIL-CQGRGSAANSIL 320

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
             Y L ITD+ P   +++ ERF++  R   PD D+DF  +RR+EVI+++  KYG  R    
Sbjct: 321  CYLLGITDVSPETITMVVERFVSEHRGEPPDIDVDFEHERREEVIQHIYAKYGRHRAGLC 380

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T    +++AA+ +VG+ + +       L   I          + +          L+DP
Sbjct: 381  ATVIHFRSRAAISEVGKVMGLSKDVTANLSGQIWGTSNGGPDPERVKQ----LGLDLSDP 436

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
             +   +++  ++ G  RH S H  G VI    L +L P+      D  + +++   I+  
Sbjct: 437  RLALTIKLIGEIIGFPRHLSQHVGGFVITKGRLDELCPIENAAMDDRTIIEWDKDDIDAL 496

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
             ++K D L L  LT ++KS D +AQ  G K  ++ IP DD +TY +L     +G+FQ+ES
Sbjct: 497  NILKVDILSLGMLTCIRKSFDLIAQHGGKKYSIASIPQDDAQTYDMLCVADAIGVFQVES 556

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLK 683
                  L  M+P  + D++  V++ RPGPI   +V+   NR+ G E +V     ++ +L 
Sbjct: 557  RAQMNFLPRMKPRELYDLVIEVAIVRPGPIQGGMVHPYINRRQGNEAVVFPSKELENVLG 616

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGIS 742
            +T GV ++QEQ MQIA + +G+  SEAD LRR+M    +   + + +++FI+G    G  
Sbjct: 617  KTLGVPLFQEQAMQIAVVAAGFLPSEADQLRRSMATFRRMGTIGQLRDKFINGMLARGYE 676

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
               A N F  +  F +YGF +SHAAA+A+++Y +AW+K H+P  F    +  +       
Sbjct: 677  NAFAENCFSQIEGFGEYGFPESHAAAFAMLAYVSAWLKCHHPAAFACGLLNAQPMGFYAP 736

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEAS 857
             +  +DAR+ +I++ P  VNT   D  +         +      IKG     A  I+ A 
Sbjct: 737  AQIVRDAREHHIEVRPVCVNTSEWDNTLEKRSDGSLALRLGFRQIKGFREEDAGWIVAAR 796

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
             +  +   E    R     L+  VLE L  A A    G  R   L ++  I         
Sbjct: 797  GNG-YPDPEALWLRA---GLSPAVLERLAEADAYAGLGLGRRDALWAVKAI--------- 843

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
             + N    +F  +                +       +   +      HP+++ +P +  
Sbjct: 844  -KGNAPLPLFNDKIEGEGIAEQPVTLPAMHLGQEVVEDYVAMRLSLKAHPMELLRPAMT- 901

Query: 978  MGIKGYEESVATIRG----NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             G+  ++       G      I +  +V+++Q+  T  G  + ++T  +         +
Sbjct: 902  -GLTAHDALPEVPLGPMAQRPISVCGLVITRQRPGTASG--VVFLTLEDETGVSNVVVW 957


>gi|323491954|ref|ZP_08097123.1| error-prone DNA polymerase [Vibrio brasiliensis LMG 20546]
 gi|323313812|gb|EGA66907.1| error-prone DNA polymerase [Vibrio brasiliensis LMG 20546]
          Length = 1023

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 259/1036 (25%), Positives = 426/1036 (41%), Gaps = 82/1036 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA--GI 67
            ++  L   S++S L GA     ++ +    +  ++AITD  ++   +     +      I
Sbjct: 2    AYAELFCQSNFSFLSGASHAEELILQADFLRYHSLAITDECSVAGVVRAYSASQQHDLNI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + IIG    ++ +                  +VLL    E Y  L  +++      + K 
Sbjct: 62   ELIIGSMFWLNDE----------------CQVVLLCPDREAYAELCRIITNSRRRSE-KG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            S ++    L       LI+                +     K      +    RL++ +Q
Sbjct: 105  SYQLSEWDLMSAKR-CLILWLPC------------NKPSDSKWGHWLTQHHRHRLWIAVQ 151

Query: 188  RHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH    D+       QLA  ++LP+ A    L  +         L A+ H   V+Q    
Sbjct: 152  RHLSSDDKQYLEHCQQLATNNQLPITACGGVLMHTATRLPLQHTLTAIKHGCSVNQLGEQ 211

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R+T         E ++         + +V IA+RC+F L+      P  +  +       
Sbjct: 212  RLTNTERTLRSQEKLAKLFKSEWL-QESVAIAKRCTFSLEELKYEYPSELVPDG----HT 266

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + L      G ++R  +G         D    +D EL +I  + +  YFL + D + +
Sbjct: 267  PMSYLIALVEYGKKLRFPEGV------PSDIAATIDKELALIDELNYPFYFLTIHDIVMF 320

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+N I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +R
Sbjct: 321  AKRNRILY-QGRGSAANSVVCYCLEITSVDPRQISVLFERFISRERDEPPDIDVDFEHER 379

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  SQ+D   K I       
Sbjct: 380  REEVIQYIYQKYGRERAALAATVISYRFKSAVRDVGKALGIEESQLDYFIKNINRRDRAQ 439

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                 I +    +   L       L+          RH S H  G +I   PL +LVP+ 
Sbjct: 440  GWQAQIVELG-LQPDSLKGEQFITLVNDILGF---PRHLSQHVGGFIIAAGPLYELVPVE 495

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF---LAQRGVKVDLSLIPF 603
                 D  V Q++   +E   L+K D L L  LT ++K  D    + QR + +       
Sbjct: 496  NASMDDRTVIQWDKDDLESLKLLKVDVLALGMLTAIRKCFDLIERIHQRTLSIAEITRRQ 555

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD   Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI   +V+  
Sbjct: 556  DDSNVYRMIQKADTVGVFQIESRAQMSMLPRLKPACYYDLVIQIAIVRPGPIQGDMVHPY 615

Query: 664  RKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             K    +  +      +  +L+ T GV I+QEQV++IA + +G+S  EAD LRRAM    
Sbjct: 616  LKRRNGEETVEYPSQEVRSVLERTLGVPIFQEQVIKIAMVAAGFSGGEADKLRRAMAAWK 675

Query: 722  KEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            K     K K + I G    G     A  IF  +  F +YGF +SH+A++AV++Y +AW+K
Sbjct: 676  KNGDLVKFKTKLIEGMQARGYQLEFAERIFAQILGFGEYGFPESHSASFAVLAYCSAWLK 735

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNRIY 836
             +YP  F  + +           +  QDAR+  + I+P  VN    D +V    G   I 
Sbjct: 736  HYYPEAFYTSLLNSLPMGFYSASQLVQDARRHGVDILPICVNASLYDHQVVVDNGKLAIR 795

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  IKG    +AR ++ A A   F+             LN+R +E L  A A+     
Sbjct: 796  LGLRQIKGFSAHSARQLIHARAKTGFNHSTQL----KHIGLNQRDVELLASANAMHSLSN 851

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R Q   ++ +                  +F       +++  +      + +     + 
Sbjct: 852  NRYQTRWAMMDSLSD------------LPLF-----QQAEESDIPVVGTPSETQTLVEDY 894

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
               G   + HP+ +              +       + + +  +V  KQ   T  G  + 
Sbjct: 895  AATGLSLAKHPITLLDEAGVLGRFTRMRDLATKPHQSLVTVTGVVTGKQSPGTAAG--VT 952

Query: 1017 WVTFSEPAKEYEANFF 1032
            + T  +         +
Sbjct: 953  FFTLEDDTGNINVVVW 968


>gi|218283532|ref|ZP_03489522.1| hypothetical protein EUBIFOR_02112 [Eubacterium biforme DSM 3989]
 gi|218215800|gb|EEC89338.1| hypothetical protein EUBIFOR_02112 [Eubacterium biforme DSM 3989]
          Length = 989

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 318/999 (31%), Positives = 502/999 (50%), Gaps = 55/999 (5%)

Query: 37   AADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTV 96
                   + +TD N ++  +EF Q      +  IIG ++                     
Sbjct: 6    KQLGYNHVCLTDHNVMYGTMEFYQLCKKHNVHAIIGLEV-------------DSIYNEEP 52

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
               +LL     G Q L +L S +           +    + +   + +++ +        
Sbjct: 53   FHFILLAKNDMGLQNLYKLSSII--------KENVSFDEVIKYAKDCVVLTSSDGKDTFS 104

Query: 157  RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNN 216
                    +     +   K  F D  YV++  +    +  +++++      +   VA + 
Sbjct: 105  AYIEHQDLEKLSAFVELCKNSFSD-FYVSISMNDSGKKRVDNKIL---KQLDCKCVALSR 160

Query: 217  SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
             L+   ED ++   L A+A  T +  +        +    +            A E    
Sbjct: 161  ILYEKSEDVKSLQALRAIAKQTSIENQGLDVQFQRYLRSPQEMEALYDECDLLATEQIAR 220

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQK-EEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
            +                +      ++    +  + L      GLE RL     A      
Sbjct: 221  MCNV--------QMAFQKSKLPVFENKLHIDSSDYLVKLCKKGLEKRLNGNLDA------ 266

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
             Y  RL++EL+VI  M F+ YFLIV DFI++A+  +I VGPGRGS AGS+ AY L IT I
Sbjct: 267  VYMNRLEYELSVIINMGFTDYFLIVWDFIRYARSKDIFVGPGRGSAAGSLVAYCLGITHI 326

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DP++ +LLFERFLNP R+SMPD D DF  DRRDEVIRYV+  YG + V+ I+TF +LQA+
Sbjct: 327  DPIQNNLLFERFLNPSRISMPDIDTDFPDDRRDEVIRYVRKLYGQDHVSHIVTFNTLQAR 386

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A+RDVGR + +P   VD L K++ N P   + +QA  D++ FR+   +D  +  L ++ 
Sbjct: 387  QAIRDVGRVMNIPARIVDELSKMLKNTPKITL-MQAYNDNALFRKRIQSDQKLIELFQMC 445

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
              +EGL RH S HAAGIV+ D+P+  + P+   V  D+  TQF  +++E  GLIK DFLG
Sbjct: 446  VSIEGLPRHTSLHAAGIVLSDQPIVNVCPLV-SVDGDIQATQFTAEYLEDLGLIKMDFLG 504

Query: 576  LKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            ++ LT + + + +   Q+ + +D+  I   D +TY LL+   TLG+FQLESSG+   L+ 
Sbjct: 505  IRNLTTIHEIVTNLKEQKHISLDMMKINLKDAKTYQLLSLGNTLGVFQLESSGITTLLQK 564

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
            +QP+ IEDI  +++LYRPG + +I  Y  RK    K+V  HPL++P+LKET G++IYQEQ
Sbjct: 565  IQPNKIEDISVVLALYRPGAMQHIDTYIERKKDPSKVVYPHPLLEPILKETYGIMIYQEQ 624

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            VMQ AQ++ G+SL++AD LR+AM KK  + M   KE+FI GA KN I  +++  IF ++ 
Sbjct: 625  VMQTAQVIGGFSLAQADTLRKAMSKKKLDVMQNLKEQFILGARKNRIKDSVSNEIFSIME 684

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
            +FA YGFNKSH+ AY++++YQ A++K +YP+ F  + +   + +  K  ++  + ++ NI
Sbjct: 685  QFAGYGFNKSHSYAYSLVAYQMAYLKANYPLYFYQSLLNSVIGSGIKTSQYIYECKRRNI 744

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
             +    +N     + +  N I   L  +KGVG T    I+E     P+  L DF ++   
Sbjct: 745  VVNGCDINHSKAFYTIEQNSIRMPLQVLKGVGKTIYPTIIEHV---PYTDLFDFLAKASM 801

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
             K+N   +  L+  GALDCFGY+R  L ++L  +  Y   V     N     F+      
Sbjct: 802  YKINESTIRILIDGGALDCFGYNRATLNENLRKLMDYVNIVRIEDPNDLRFDFSIVSRPG 861

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
              +I       EN   + + EQ V GFY S HP+   + + +           A  R   
Sbjct: 862  IQRIK------ENPIQKAQKEQYVYGFYVSEHPVQSLR-MHKYPNCIPL--LNAVNRDGY 912

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +   V S +  KT+KG  + +++  + A + +A   P
Sbjct: 913  MNILVRVASFRTHKTKKGDWMCFMSVEDEAGKMDAVIMP 951


>gi|217977255|ref|YP_002361402.1| DNA polymerase III, alpha subunit [Methylocella silvestris BL2]
 gi|217502631|gb|ACK50040.1| DNA polymerase III, alpha subunit [Methylocella silvestris BL2]
          Length = 1145

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 248/1082 (22%), Positives = 442/1082 (40%), Gaps = 102/1082 (9%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG- 66
            SP +  L   +++S L GA     ++    A     + I D N+L   +   +   A   
Sbjct: 2    SPRYAELAATTNFSFLRGASHPEELVAAAMALGLAGLGIADRNSLAGVVRAHRFLKANKS 61

Query: 67   --IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
                  IG +L                     P I+        Y RL  L++R     Q
Sbjct: 62   PSFHLAIGARLVFCDG---------------APDILSYPRDRAAYGRLTRLLTRANARAQ 106

Query: 125  GKQSVRICLSWLQEIGTEGLIML---TGGSSGPIDRA-------FFFNSS--------QV 166
             K    +  S L E      ++L   T    G   R           N+           
Sbjct: 107  -KGVSLLRSSDLIEAAQGQQLILMPETTWEKGDETRRSRKIHAELHDNNHYKNPVDLLDD 165

Query: 167  AEKRL--------LTFKKLFGDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNS 217
            A               ++    RL++     +    R   +  + L+     PL+A N+ 
Sbjct: 166  AHALAFGQEMPLIEQLREASNGRLWLAAKMTYGVSMRRDLASRIALSRKTNTPLIAVNDV 225

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
            +  + E     DVL A+     + +         + ++K+ +EM  +F+  P+A+E T+ 
Sbjct: 226  IMHTPERRPLQDVLSAIRAGQTLDRLGLALEANAERHMKSAAEMARLFAGAPQAMEETLR 285

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
                  F L      L     +E  +  +  +  L   A  G + R   G          
Sbjct: 286  FLDGLDFSLDE----LRGDYPEELREGFETPQAALAFFAREGAKFRFPDGV------PPS 335

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
                +  EL ++ ++ ++ YFL V D +++A+   I    GRGS A S   Y L +T+++
Sbjct: 336  VETAIAHELKLVEQLDYAPYFLTVHDIVRFARTEKIL-CQGRGSAANSTLCYCLGVTEVN 394

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            P   +LLFERF++PDR   PD D+DF  +RR++V++Y+  +YG  R A   +  + +A++
Sbjct: 395  PAFHNLLFERFISPDRNEPPDIDVDFEHERREQVMQYIYARYGRARAALTASVITYRARS 454

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            A+R+VG+A  +    V  L   I    +  V     A +++       +  + + L++++
Sbjct: 455  AIREVGKAFGLSDDVVSALSATIWGGSSSSVE----AGEAQKAGFDPTEARLAQTLKLAE 510

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            +L G  RH S H  G VI    L ++VP+      D    +++   ++  G++K D L L
Sbjct: 511  ELIGFPRHLSQHTGGFVITRSRLDEVVPIMNAAMEDRTTIEWDKDDLDALGILKIDVLAL 570

Query: 577  KTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
              LT L+K  D + +   +   ++ +P +    Y +++   T+G+FQ+ES      L  +
Sbjct: 571  GMLTCLRKGFDLIREHYGEELTIATLPPEQGAVYEMISRADTIGVFQIESRAQMSMLPRL 630

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
            +P    D++  V++ RPGPI   +V+    R+ G E +      ++ +L +T GV ++QE
Sbjct: 631  RPREFYDLVIEVAIVRPGPIQGDMVHPYLRRRQGLEPVSYPSKQLEEVLGKTLGVPLFQE 690

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFEL 752
            Q M+IA + +G++ SEAD LRRAM        +   + + I G      S+  A   F+ 
Sbjct: 691  QAMKIAIVAAGFTPSEADQLRRAMATFKHVGTIGAFRAKMIEGMVARDYSRDFAERCFKQ 750

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  F  YGF +SHAA++A++ Y +AWMK  YP  F  A +  +        +  +DAR+ 
Sbjct: 751  IEGFGSYGFPESHAASFALLVYASAWMKCRYPDAFACALLNAQPMGFYAPAQILRDAREH 810

Query: 813  NIQIMPPSVNTPCVDFKVGDNR---------------------IYYSLAAIKGVGTTTAR 851
             + +    VN    D  +                         I      IKG     A 
Sbjct: 811  GVGVEEVDVNFSHWDSTLTPAAERRPPHPRHASMQGEIFATCGISLGFRQIKGFAEHDAT 870

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
             ++    D+ +DS+ D   R     L+  V+E L  A A    G  R + L ++  +   
Sbjct: 871  QLVAMR-DRGYDSIRDLWLRA---GLSLAVMELLAGADAFRSLGLDRREALWAVRGL--- 923

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
                  NR    +++   +  ++       K            + R L      HP+   
Sbjct: 924  ------NRAGDKDDLPLLKDLSWRATEAEAKLPPMLLGEHVVEDYRRLSLSLKAHPVSFL 977

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +  L +  I   ++      G+ I +A +V+ +Q+  T  G  + ++T  +      A  
Sbjct: 978  RERLTQKRILRADDLKNQPAGSRITVAGLVLVRQRPGTASG--VIFLTIEDETGIANAIV 1035

Query: 1032 FP 1033
            +P
Sbjct: 1036 WP 1037


>gi|255323961|ref|ZP_05365087.1| putative DNA polymerase III, alpha subunit [Corynebacterium
            tuberculostearicum SK141]
 gi|255299141|gb|EET78432.1| putative DNA polymerase III, alpha subunit [Corynebacterium
            tuberculostearicum SK141]
          Length = 1039

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 269/1029 (26%), Positives = 443/1029 (43%), Gaps = 96/1029 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   SSYS L+GA     ++ +        +AI D +  +  ++F++ A  AG+  +
Sbjct: 48   FAELHAVSSYSFLDGAAEPEELVARAVELGLEGLAIVDCDGFYGLMKFAEAAAKAGLPAV 107

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +                     + +L  T EGY+RL  L++R  +    K   R
Sbjct: 108  YGAELSLAEAP-----------------VTVLARTPEGYRRLSRLIARARMEAGEKD--R 148

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    L E+  E          G     FF    +   +     +++  D + +      
Sbjct: 149  VAYPPLDEVARE--------LEGE---CFFLVGPEALAEIDNLLERIKIDSIVLEYSCSM 197

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              +   + + +           A   +    +    A    +A    ++ +         
Sbjct: 198  SPEDADQHRFLDKYNNLRAIATARPAAATRDQARLAAAKRALARRE-SLAAAAPHAHPMG 256

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              +L++  +M  +  D PE +  TV +AR CSF     AP LP F   E       E + 
Sbjct: 257  AGWLRSGEQMAQLLPDRPELIAETVALARECSFTWDALAPNLPHFPVPEG----YTEMSW 312

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L ++          + A       Q  R+++  EL VI ++ F GYFLIV D + + ++ 
Sbjct: 313  LEHEVW---RRAKDRYASRPAEIRQAARKQIRHELGVIKQLGFPGYFLIVCDLVDFCRRE 369

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            NI    GRGS A S   +AL IT+ +P+   LLFERFL+PDR   PD DID    RR+EV
Sbjct: 370  NIL-CQGRGSAANSAVCFALGITNAEPISAQLLFERFLSPDRDGPPDIDIDIESGRREEV 428

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YV   +G +R AQ+    + + K A RD  RAL  P    D   K     PA      
Sbjct: 429  IQYVYRTHGRDRAAQVANVITYRRKGATRDAARALGYPQGSADAWSKGTSEPPA------ 482

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                                +  ++++  G  RH   H+ G+V+ DRP++ +VPM     
Sbjct: 483  -------------------DVSSLAEQFLGQPRHLGIHSGGMVLCDRPIADVVPMEWARM 523

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             +  V Q++      AGL+KFD LGL  L  L   +D +      +V L  +   + E Y
Sbjct: 524  ENRSVLQWDKDDCAAAGLVKFDLLGLGMLEALHHMIDAVRATTGREVHLWELDLAEPEVY 583

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKNG 667
             +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y  R++G
Sbjct: 584  DMLCRADAVGVFQVESRAQLATLPRLKPRRFFDLVVEVALIRPGPIQGGSVHPYLRRRDG 643

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMD 726
             E++   HP+++  L +T G+ ++QEQ+MQIA   +G+S +EAD LRRAM  K+  E+M 
Sbjct: 644  LEEVTYDHPVLEKSLGKTLGIPLFQEQLMQIAVDAAGFSGAEADDLRRAMGSKRSPEKMA 703

Query: 727  KQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
              + RF +G  + NGI   +A  ++  +  FA YGF +SH+ ++A + Y +AW K HYP 
Sbjct: 704  ALRSRFFAGLRETNGIEGEVAEKLWAKIVAFAAYGFPESHSQSFASLVYFSAWFKYHYPA 763

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKG 844
            EF    +  +       +   QDAR+  ++++P S+N          +  I   L  IKG
Sbjct: 764  EFCVGLLRAQPMGFYSPQSLIQDARRHGVRVLPVSINDSGAQAHATGSAEIRLGLNLIKG 823

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +G + A+ +    A  PF S+ D   R D   L+   +E+L  AGAL+C G  R Q L  
Sbjct: 824  LGESAAKRV---EAGAPFTSMSDLSRRAD---LSVEQVEALATAGALECLGLDRRQALWQ 877

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
                       E+       +  A                  ++      +    G   +
Sbjct: 878  AG-----VAATEREGMLPGTSALAS-----------PHLPGMSAFELMATDVAATGVTHN 921

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
              P+++ +  L    +           G  +R+A ++  +Q+ +T  G  + ++   +  
Sbjct: 922  QQPMELVRASLAD--VLPASHLPHVPDGTRVRIAGIITHRQRPRTASG--LTFLGVEDET 977

Query: 1025 KEYEANFFP 1033
                    P
Sbjct: 978  GLMNVMVSP 986


>gi|154247396|ref|YP_001418354.1| DNA polymerase III, alpha subunit [Xanthobacter autotrophicus Py2]
 gi|154161481|gb|ABS68697.1| DNA polymerase III, alpha subunit [Xanthobacter autotrophicus Py2]
          Length = 1116

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 232/1074 (21%), Positives = 427/1074 (39%), Gaps = 93/1074 (8%)

Query: 2    TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
               +  +P++  L   S +S L GA +   +++         + I D N +   +     
Sbjct: 6    MNAIAPAPAYAELCAASHFSFLRGASAPARLVEVAVRLGHCGLGIADRNTVAGVVRAYSA 65

Query: 62   ACAAGIQPIIGCQLD-IDMQDNLKMTNQGKTPF-----------------------PTVP 97
                        +L  +D  +N    +  +T                            P
Sbjct: 66   LE----------ELRRLDADENAGDEDDAETRAAKSRLAARARAFRLATGTRLVFCDNTP 115

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             I+   +   G+ RL  L++      + K    + LS L       L++L  G       
Sbjct: 116  DILAYPADRAGWGRLCRLLTTGNRRAK-KGECHLALSDLLADPGGLLLVLMPGPG----- 169

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNN 216
                  ++     L   ++     +++       G DR R + +  LA  H +PL+A N+
Sbjct: 170  --MDGLAERLSPALARLEEAAPGAVWLAADMPFAGEDRRRLAALKALAGAHGVPLLAVND 227

Query: 217  SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTV 275
             L  +  + +  D+L  +     +++  R      + +LK  +E+  +F D PEA+  + 
Sbjct: 228  VLCATPRERDLQDILTCIREGIPIAEAGRRLQANAERHLKPAAEIARLFRDAPEAIAESG 287

Query: 276  EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
             +  R  F +       PR             +  L         VR   G         
Sbjct: 288  HLLARVEFSVGELKYEYPREPVPPGW----TPQAWLEELTWRCARVRYPNGL------TP 337

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
               + L  EL +I++++++ YFL + D +++A+   I    GRGS A S   Y L IT +
Sbjct: 338  KVERLLRDELALISQLEYAPYFLTIHDIVRFAESRGIL-CQGRGSAANSAVCYVLGITAV 396

Query: 396  DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
            DP    LLF RF++ +R   PD D+DF  +RR+EVI+++  KYG  R   + T    + +
Sbjct: 397  DPADNDLLFARFISTERREPPDIDVDFEHERREEVIQHIYEKYGRHRAGIVATVIHYRPR 456

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
            +A+RDVG+AL +      RL           ++   I +         A+P + R ++++
Sbjct: 457  SAIRDVGKALGLTEDITARLASTQWGSWGRDIADSQIRE----AGLDPANPLIRRAVDLA 512

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            ++L G  RH S H  G V+    L  +VP+     +D    +++   I+   L+K D L 
Sbjct: 513  RRLMGAPRHLSQHVGGFVLARDRLDDMVPIGNAAMADRTFIEWDKDDIDALRLMKVDVLA 572

Query: 576  LKTLTLLQKSLDFLAQRGVKVD-LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            L  LT ++K+LD +         L+ +P    + Y +L    ++G+FQ+ES      L  
Sbjct: 573  LGMLTCIRKALDLMRAHEGINFALADVPGAQEDVYAMLARGDSIGVFQVESRAQINMLPR 632

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHP--------LIDPMLKE 684
            ++P    D++  V++ RPGPI   +V+    R+NG+EK+    P         +  +L++
Sbjct: 633  LRPREFYDLVIQVAIVRPGPIQGDMVHPYLRRRNGQEKVDYPSPAPEHGPSDELRQVLEK 692

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISK 743
            T GV ++QEQ M++A + + +S +EA+ LRRAM        + + +   +      G  +
Sbjct: 693  TLGVPLFQEQAMKLAMVAARFSDAEANRLRRAMATFRNLGTIHEFEALMVERMVARGYER 752

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
              A   FE +  F  YGF +SHAA++A + Y ++++K  +P  F  A +  +        
Sbjct: 753  AFAQRCFEQIKGFGSYGFPESHAASFAKLVYISSYIKCRHPAVFACALLNAQPMGFYAPA 812

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-----IYYSLAAIKGVGTTTARHIMEASA 858
            +  +DAR+ ++++    +N    D  +         +      + G        ++ A  
Sbjct: 813  QIVRDAREHSVEVRAIDINHSHHDNTLERRADGALALRLGFRQVDGFHEAWGERLVAARG 872

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
               F  +E    R    +L  R ++ L  A      G  R   L     +          
Sbjct: 873  TG-FSGVEVLARRA---RLPTRAVKLLADADGFRSLGLDRRAALWHARRLPD-------- 920

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
              +    +FA        +    +      S     + + +     GHP+   +   R  
Sbjct: 921  --DDALPLFAAADARELGQEEEVRLPDMARSEHIVADYQTVRLSLKGHPMGELRDHFRAA 978

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             I    E+ A   G   R A +V+ +Q+     G    ++T  +         +
Sbjct: 979  RILSCAETTALKDGAFARTAGVVLVRQRPG--NGKA-IFITLEDETGITNVVLW 1029


>gi|28898810|ref|NP_798415.1| putative DNA polymerase III alpha chain [Vibrio parahaemolyticus RIMD
            2210633]
 gi|153838840|ref|ZP_01991507.1| DNA polymerase III, alpha subunit, putative [Vibrio parahaemolyticus
            AQ3810]
 gi|260365606|ref|ZP_05778133.1| DNA polymerase III, alpha subunit family protein [Vibrio
            parahaemolyticus K5030]
 gi|260879151|ref|ZP_05891506.1| error-prone DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|260898463|ref|ZP_05906959.1| error-prone DNA polymerase [Vibrio parahaemolyticus Peru-466]
 gi|260899599|ref|ZP_05907994.1| DNA polymerase III, alpha subunit family protein [Vibrio
            parahaemolyticus AQ4037]
 gi|71151841|sp|Q87N39|DNAE2_VIBPA RecName: Full=Error-prone DNA polymerase
 gi|28807029|dbj|BAC60299.1| putative DNA polymerase III alpha chain [Vibrio parahaemolyticus RIMD
            2210633]
 gi|149747724|gb|EDM58624.1| DNA polymerase III, alpha subunit, putative [Vibrio parahaemolyticus
            AQ3810]
 gi|308089025|gb|EFO38720.1| error-prone DNA polymerase [Vibrio parahaemolyticus Peru-466]
 gi|308093560|gb|EFO43255.1| error-prone DNA polymerase [Vibrio parahaemolyticus AN-5034]
 gi|308106899|gb|EFO44439.1| DNA polymerase III, alpha subunit family protein [Vibrio
            parahaemolyticus AQ4037]
 gi|308114675|gb|EFO52215.1| DNA polymerase III, alpha subunit family protein [Vibrio
            parahaemolyticus K5030]
          Length = 1024

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 245/1037 (23%), Positives = 426/1037 (41%), Gaps = 83/1037 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA--CAAGI 67
            S+  L   S++S L GA     ++ + A  +  AIAITD  ++   ++           I
Sbjct: 2    SYAELFCQSNFSFLTGASHAEELVLQAAFYRYHAIAITDECSVAGVVKAHATIEQHKLDI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+G    ++ +                  IVLL    + Y  +  +++      + K 
Sbjct: 62   KQIVGSMFWLNEE----------------CQIVLLCPCRKAYAEMCRIITNARRRSE-KG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            S ++    L  I               +      +             +   +RL+V +Q
Sbjct: 105  SYQLSEWDLMSIRH--------CLVLWLPTHQASDHY-----WGRWLNQHHNNRLWVAIQ 151

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH  G D    +   +LA+  + P+ A    L  + E      +L A+ H   V Q    
Sbjct: 152  RHLGGDDDAYTNHCEKLAHELQQPITACGGVLMHTAERLPLQHILTAIKHGCSVDQLGFE 211

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R++           +              E ++  + + +     L      E       
Sbjct: 212  RLSNAERALRPLNKLVRIYKPEWL-----EESKYIADLCEFKLSDLKYEYPTELIPNGYT 266

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR     G E R  +G        +D  Q ++ EL +I  +K+  YFL + D + +
Sbjct: 267  PNSYLRMLVEQGKERRFPEGV------PEDINQTIENELRLIEDLKYHYYFLTIHDIVMF 320

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+  I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +R
Sbjct: 321  AKQQGILY-QGRGSAANSVVCYCLEITAVDPRQISVLFERFISKERKEPPDIDVDFEHER 379

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG ER A   T  S + K+A+R+VG+AL +  +Q+D   K +       
Sbjct: 380  REEVIQYIYKKYGRERAALAATVISYRFKSAVREVGKALGIEETQLDFFIKNVNRRDRSQ 439

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                 I +       +       + +++  ++ G  RH S H  G VI   PL +LVP+ 
Sbjct: 440  GWQAQIIE----LGLQPESLKGQQFIQLVNEIIGFPRHLSQHVGGFVISSGPLYELVPVE 495

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---VDLSLIPF 603
                 D  + Q++   +E   L+K D L L  L  ++K    + +   +   +       
Sbjct: 496  NAAMEDRTIIQWDKDDLESLELLKVDVLALGMLNAIRKCFQLIEKHHQRSLSIAEITRRQ 555

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662
            DD   Y +L    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI   +V+  
Sbjct: 556  DDPHVYRMLQKADTVGVFQIESRAQMSMLPRLKPACYYDLVIQIAIVRPGPIQGDMVHPF 615

Query: 663  -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R+NG+E +      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM    
Sbjct: 616  LKRRNGEEPVSYPSEAVKSVLERTMGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMASWK 675

Query: 722  KEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            K     K K + ++G  + G     A  IFE +  F +YGF +SH+A++AV++Y +AW+K
Sbjct: 676  KNGDLAKFKPKLLNGMQERGYDLAFAERIFEQICGFGEYGFPESHSASFAVLAYCSAWLK 735

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRI 835
             +YP EF  A +  +        +  QDAR+  ++++P  VN       +     G   +
Sbjct: 736  YYYPAEFYTALLNSQPMGFYSPSQLVQDARRHGVEVLPICVNHSYYQHHLIQRPNGRLGV 795

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                  +KG     A  ++E      + S+++    V     +RR +E L  A A     
Sbjct: 796  QLGFRLVKGFNEEGATRLVERRPKTGYHSIQE----VKQILRSRRDIELLASANAFQILS 851

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R     +  +                  +F H +               +       +
Sbjct: 852  GNRYNARWAAMDSLSD------------LPLFHHIEEPSVGYQVQP-----SEYESLIED 894

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G   + HP+ + +           ++ V     + + +A +V  +Q   T  G  +
Sbjct: 895  YASTGLSLNRHPITLLEEAGILPRFTRMKQLVDKEHKSLVTVAGVVTGRQSPGTAAG--V 952

Query: 1016 GWVTFSEPAKEYEANFF 1032
             + T  +         +
Sbjct: 953  TFFTLEDDTGNINVVVW 969


>gi|315085031|gb|EFT57007.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL027PA2]
          Length = 1031

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 276/1029 (26%), Positives = 441/1029 (42%), Gaps = 105/1029 (10%)

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++ 
Sbjct: 2    AEAAEACGLSTIIGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTD 56

Query: 119  MYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             YL++ G K      L  L E+      +LTG   G + +         AE  L     L
Sbjct: 57   AYLVEGGRKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVKGML-QAEAELRRLVDL 115

Query: 178  FG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG D + V L  HR   D      + +LA  H L  VAT  + +   E +E    L AV 
Sbjct: 116  FGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVR 175

Query: 236  HSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                + + D          L++ +EM  +FS   +A++NTV +A R +F L+   P LP 
Sbjct: 176  ARRSLDEMDGWLPPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLKSVRPRLPD 235

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                +         + LR+    G         +A        + RL  EL++I    F+
Sbjct: 236  QKVPDG----HTPISWLRHLVEEGRRACYGDDPVA--------KDRLATELDLIEDRGFA 283

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV+D +++A+   I    GRGS A S   YAL IT +DP+ + L FERFL+  R  
Sbjct: 284  GYFLIVSDIVEFAQSQGIL-CQGRGSAAASAVCYALGITVVDPVFYGLPFERFLSVLREE 342

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D 
Sbjct: 343  EPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDA 402

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
              + +      P+                     D +  ++Q++ GL RH   H+AG+V+
Sbjct: 403  WSRQMERRSVPPLPHDP-----------DGPEIPDDVPTLAQQVMGLPRHLGIHSAGMVL 451

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D ++Q   
Sbjct: 452  TREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCG 511

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ IP ++   Y +L    ++G+FQ+ES     AL  ++P C  D+   + L RPG
Sbjct: 512  RFWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPG 571

Query: 654  PID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+    +  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD
Sbjct: 572  PVQGGAVHPYIRRRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADAD 631

Query: 712  VLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            +LRRAM  K+  E +D  + +   G + NGI    A  I+  +  FA++GF +SHA ++A
Sbjct: 632  LLRRAMGSKRGVERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFA 691

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--- 827
             + Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V    
Sbjct: 692  GLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADL 751

Query: 828  ---------------------------------FKVGDN----------RIYYSLAAIKG 844
                                             F    +           +   L+ + G
Sbjct: 752  ELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSG 811

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +   TA  I+E    + F SL+D   RVD        +E+L  AGA D    SR   L  
Sbjct: 812  INIETATRIVEERERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQ 868

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +  I   A      +      +                           ++ R  G   +
Sbjct: 869  IGQINGVAPGQLDVQVVTQPPL----------------LPEPTQMELLGDDLRATGISTA 912

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+   +  L + G+   +          I +A +V  +Q+  T  G  + ++   +  
Sbjct: 913  DHPVRQVRDALNRRGVVQVDRLDGVETRRRIEVAGVVTHRQRPGTAGG--VTFLNLEDET 970

Query: 1025 KEYEANFFP 1033
                    P
Sbjct: 971  GLLNVIVTP 979


>gi|313773082|gb|EFS39048.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL074PA1]
 gi|313810788|gb|EFS48502.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL083PA1]
 gi|313831126|gb|EFS68840.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL007PA1]
 gi|313834194|gb|EFS71908.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL056PA1]
 gi|314975021|gb|EFT19116.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL053PA1]
 gi|314976902|gb|EFT20997.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL045PA1]
 gi|314984774|gb|EFT28866.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL005PA1]
 gi|315081044|gb|EFT53020.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL078PA1]
 gi|315096590|gb|EFT68566.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL038PA1]
 gi|315107677|gb|EFT79653.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL030PA1]
 gi|327327972|gb|EGE69743.1| error-prone DNA polymerase [Propionibacterium acnes HL096PA2]
 gi|327444405|gb|EGE91059.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL043PA1]
 gi|327444584|gb|EGE91238.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL043PA2]
 gi|328762313|gb|EGF75800.1| error-prone DNA polymerase [Propionibacterium acnes HL099PA1]
          Length = 1031

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 275/1029 (26%), Positives = 440/1029 (42%), Gaps = 105/1029 (10%)

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++ 
Sbjct: 2    AEAAEACGLSTIIGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTD 56

Query: 119  MYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             YL++ G K      L  L E+      +LTG   G + +         AE  L     L
Sbjct: 57   AYLVEGGRKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVKGML-QAEAELRRLVDL 115

Query: 178  FG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG D + V L  HR   D      + +LA  H L  VAT  + +   E +E    L AV 
Sbjct: 116  FGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVR 175

Query: 236  HSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                + + D          L++ +EM  +FS   +A++NTV +A R +F L+   P LP 
Sbjct: 176  ARRSLDEMDGWLPPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLKSVRPRLPD 235

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                +         + LR+    G         +A        + RL  EL++I    F+
Sbjct: 236  QKVPDG----HTPISWLRHLVEEGRRACYGDDPVA--------KDRLATELDLIEDRGFA 283

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV+D +++A+   I    GRGS A S   Y L IT +DP+ + L FERFL+  R  
Sbjct: 284  GYFLIVSDIVEFAQSQGIL-CQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREE 342

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D 
Sbjct: 343  EPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDA 402

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
              + +      P+                     D +  ++Q++ GL RH   H+AG+V+
Sbjct: 403  WSRQMERRSVPPLPHDP-----------DGPEIPDDVTTLAQQVMGLPRHLGIHSAGMVL 451

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D ++Q   
Sbjct: 452  TREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCG 511

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ IP ++   Y +L    ++G+FQ+ES     AL  ++P C  D+   + L RPG
Sbjct: 512  RFWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPG 571

Query: 654  PID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+    +  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD
Sbjct: 572  PVQGGAVHPYIRRRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADAD 631

Query: 712  VLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            +LRRAM  K+  E +D  + +   G + NGI    A  I+  +  FA++GF +SHA ++A
Sbjct: 632  LLRRAMGSKRGVERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFA 691

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--- 827
             + Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V    
Sbjct: 692  GLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADL 751

Query: 828  ---------------------------------FKVGDN----------RIYYSLAAIKG 844
                                             F    +           +   L+ + G
Sbjct: 752  ELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSG 811

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +   TA  I+E    + F SL+D   RVD        +E+L  AGA D    SR   L  
Sbjct: 812  INIETATRIVEERERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQ 868

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +  I   A      +      +                           ++ R  G   +
Sbjct: 869  IGQINGVAPGQLDVQVVTQPPL----------------LPEPTQMELLGDDLRATGISTA 912

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+   +  L + G+   +          I +A +V  +Q+  T  G  + ++   +  
Sbjct: 913  DHPVRQVRDALNRRGVVQVDRLDGVETRRRIEVAGVVTHRQRPGTAGG--VTFLNLEDET 970

Query: 1025 KEYEANFFP 1033
                    P
Sbjct: 971  GLLNVIVTP 979


>gi|313808664|gb|EFS47122.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL087PA2]
 gi|313819151|gb|EFS56865.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL046PA2]
 gi|313820880|gb|EFS58594.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL036PA1]
 gi|313823290|gb|EFS61004.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL036PA2]
 gi|313826186|gb|EFS63900.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL063PA1]
 gi|314925973|gb|EFS89804.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL036PA3]
 gi|314960687|gb|EFT04788.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL002PA2]
 gi|314979513|gb|EFT23607.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL072PA2]
 gi|314986415|gb|EFT30507.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL005PA2]
 gi|314988502|gb|EFT32593.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL005PA3]
 gi|315085135|gb|EFT57111.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL002PA3]
 gi|315090069|gb|EFT62045.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL072PA1]
 gi|327330102|gb|EGE71854.1| error-prone DNA polymerase [Propionibacterium acnes HL096PA3]
 gi|327448373|gb|EGE95027.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL013PA2]
 gi|328755488|gb|EGF69104.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL020PA1]
          Length = 1031

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 276/1029 (26%), Positives = 441/1029 (42%), Gaps = 105/1029 (10%)

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++ 
Sbjct: 2    AEAAEACGLSTIIGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTD 56

Query: 119  MYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             YL++ G K      L  L E+      +LTG   G + +         AE  L     L
Sbjct: 57   AYLVEGGRKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVKGML-QAEAELRRLVDL 115

Query: 178  FG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG D + V L  HR   D      + +LA  H L  VAT  + +   E +E    L AV 
Sbjct: 116  FGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVR 175

Query: 236  HSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                + + D          L++ +EM  +FS   +A++NTV +A R +F L+   P LP 
Sbjct: 176  ARRSLDEMDGWLPPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLKSVRPRLPD 235

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                +         + LR+    G         +A        + RL  EL++I    F+
Sbjct: 236  QKVPDG----HTPISWLRHLVEEGRRACYGDDPVA--------KDRLATELDLIEDRGFA 283

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV+D +++A+   I    GRGS A S   YAL IT +DP+ + L FERFL+  R  
Sbjct: 284  GYFLIVSDIVEFAQSQGIL-CQGRGSAAASAVCYALGITVVDPVFYGLPFERFLSVLREE 342

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D 
Sbjct: 343  EPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDA 402

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
              + +      P+                     D +  ++Q++ GL RH   H+AG+V+
Sbjct: 403  WSRQMERRSVPPLPHDP-----------DGPEIPDDVTTLAQQVMGLPRHLGIHSAGMVL 451

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D ++Q   
Sbjct: 452  TREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCG 511

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ IP ++   Y +L    ++G+FQ+ES     AL  ++P C  D+   + L RPG
Sbjct: 512  RFWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPG 571

Query: 654  PID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+    +  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD
Sbjct: 572  PVQGGAVHPYIRRRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADAD 631

Query: 712  VLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            +LRRAM  K+  E +D  + +   G + NGI    A  I+  +  FA++GF +SHA ++A
Sbjct: 632  LLRRAMGSKRGVERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFA 691

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--- 827
             + Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V    
Sbjct: 692  GLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADL 751

Query: 828  ---------------------------------FKVGDN----------RIYYSLAAIKG 844
                                             F    +           +   L+ + G
Sbjct: 752  ELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSG 811

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +   TA  I+E    + F SL+D   RVD        +E+L  AGA D    SR   L  
Sbjct: 812  INIETATRIVEERERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQ 868

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +  I   A      +      +                           ++ R  G   +
Sbjct: 869  IGQINGVAPGQLDVQVVTQPPL----------------LPEPTQMELLGDDLRATGISTA 912

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+   +  L + G+   +          I +A +V  +Q+  T  G  + ++   +  
Sbjct: 913  DHPVRQVRDALNRRGVVQVDRLDGVETRRRIEVAGVVTHRQRPGTAGG--VTFLNLEDET 970

Query: 1025 KEYEANFFP 1033
                    P
Sbjct: 971  GLLNVIVTP 979


>gi|313793495|gb|EFS41542.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL110PA1]
 gi|313802915|gb|EFS44126.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL110PA2]
 gi|313839824|gb|EFS77538.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL086PA1]
 gi|314963556|gb|EFT07656.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL082PA1]
 gi|315079143|gb|EFT51148.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL053PA2]
 gi|327455700|gb|EGF02355.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL092PA1]
          Length = 1031

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 275/1029 (26%), Positives = 440/1029 (42%), Gaps = 105/1029 (10%)

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++ 
Sbjct: 2    AEAAEACGLSTIIGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTD 56

Query: 119  MYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             YL++ G K      L  L E+      +LTG   G + +         AE  L     L
Sbjct: 57   AYLVEGGRKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVKGML-QAEAELRRLVDL 115

Query: 178  FG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG D + V L  HR   D      + +LA  H L  VAT  + +   E +E    L AV 
Sbjct: 116  FGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVR 175

Query: 236  HSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                + + D          L++ +EM  +FS   +A++NTV +A R +F L+   P LP 
Sbjct: 176  ARRSLDEMDGWLPPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLKSVRPRLPD 235

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                +         + LR+    G         +A        + RL  EL++I    F+
Sbjct: 236  QKVPDG----HTPISWLRHLVEEGRRACYGDDPVA--------KDRLATELDLIEDRGFA 283

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV+D +++A+   I    GRGS A S   Y L IT +DP+ + L FERFL+  R  
Sbjct: 284  GYFLIVSDIVEFAQSQGIL-CQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREE 342

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D 
Sbjct: 343  EPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDA 402

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
              + +      P+                     D +  ++Q++ GL RH   H+AG+V+
Sbjct: 403  WSRQMERRSVPPLPHDP-----------DGPEIPDDVTTLAQQVMGLPRHLGIHSAGMVL 451

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D ++Q   
Sbjct: 452  TREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCG 511

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ IP ++   Y +L    ++G+FQ+ES     AL  ++P C  D+   + L RPG
Sbjct: 512  RFWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPG 571

Query: 654  PID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+    +  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD
Sbjct: 572  PVQGGAVHPYIRRRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADAD 631

Query: 712  VLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            +LRRAM  K+  E +D  + +   G + NGI    A  I+  +  FA++GF +SHA ++A
Sbjct: 632  LLRRAMGSKRGVERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFA 691

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--- 827
             + Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V    
Sbjct: 692  GLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADL 751

Query: 828  ---------------------------------FKVGDN----------RIYYSLAAIKG 844
                                             F    +           +   L+ + G
Sbjct: 752  ELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSG 811

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +   TA  I+E    + F SL+D   RVD        +E+L  AGA D    SR   L  
Sbjct: 812  INIETATRIVEERERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQ 868

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +  I   A      +      +                           ++ R  G   +
Sbjct: 869  IGQINGVAPGQLDVQVVTQPPL----------------LPEPTQMELLGDDLRATGISTA 912

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+   +  L + G+   +          I +A +V  +Q+  T  G  + ++   +  
Sbjct: 913  DHPVRQVRDALNRRGVVQVDRLDGVEARRRIEVAGVVTHRQRPGTAGG--VTFLNLEDET 970

Query: 1025 KEYEANFFP 1033
                    P
Sbjct: 971  GLLNVIVTP 979


>gi|313763361|gb|EFS34725.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL013PA1]
 gi|313829317|gb|EFS67031.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL063PA2]
 gi|314914584|gb|EFS78415.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL005PA4]
 gi|314918982|gb|EFS82813.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL050PA1]
 gi|314920606|gb|EFS84437.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL050PA3]
 gi|314930402|gb|EFS94233.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL067PA1]
 gi|314956070|gb|EFT00466.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL027PA1]
 gi|314957586|gb|EFT01689.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL002PA1]
 gi|314968599|gb|EFT12697.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL037PA1]
 gi|315098067|gb|EFT70043.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL059PA2]
 gi|315100767|gb|EFT72743.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL046PA1]
 gi|315109377|gb|EFT81353.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL030PA2]
 gi|327452428|gb|EGE99082.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL087PA3]
 gi|327452443|gb|EGE99097.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL083PA2]
 gi|328754927|gb|EGF68543.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL087PA1]
 gi|328759021|gb|EGF72637.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL025PA2]
          Length = 1031

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 264/1028 (25%), Positives = 425/1028 (41%), Gaps = 103/1028 (10%)

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++ 
Sbjct: 2    AEAAEACGLSTIIGSELSIGVPE-----PQNGVVDPMGSHLLVLANGPEGYRRLAEALTD 56

Query: 119  MYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             YL++ G K      L  L E+      +LTG   G + +         AE  L     L
Sbjct: 57   AYLVEGGRKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVRGML-QAEAELRRLVDL 115

Query: 178  FG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG D + V L  HR   D      + +LA  H L  VAT  + +   E +E    L AV 
Sbjct: 116  FGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVR 175

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                + + D            R    +  +DL     + V+     +     H   +   
Sbjct: 176  ARRSLDEMDGWL---PPGPVARLRSGAEMADLFSRHRDAVDNTVSVAERTAFHLKSVRPR 232

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +  +         + LR+    G      +  +A        + RL  ELN+I    F+G
Sbjct: 233  LPDQKVPDGHTPISWLRHLVEEGRRACYGEDPVA--------KDRLATELNLIENRGFAG 284

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV+D +++A+   I    GRGS A S   Y L IT +DP+ + L FERFL+  R   
Sbjct: 285  YFLIVSDIVEFAQSQGIL-CQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREEE 343

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D  
Sbjct: 344  PDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDAW 403

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             + +      P+                     D +  ++Q++ GL RH   H+AG+V+ 
Sbjct: 404  SRQMERRSVPPLPHDP-----------DGSEIPDDVTTLAQQVMGLPRHLGIHSAGMVLT 452

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594
              P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D ++Q    
Sbjct: 453  REPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCGR 512

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               L+ IP ++   Y +L    ++G+FQ+ES     AL  ++P C  D+   + L RPGP
Sbjct: 513  FWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPGP 572

Query: 655  ID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +    +  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD+
Sbjct: 573  VQGGAVHPYIRRRTGAEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADADL 632

Query: 713  LRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRRAM  K+  E +D    +   G + NGI    A  I+  +  FA++GF +SHA ++A 
Sbjct: 633  LRRAMGSKRRVERIDSLCTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFAG 692

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD---- 827
            + Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V     
Sbjct: 693  LVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADLE 752

Query: 828  --------------------------------FKVGDN----------RIYYSLAAIKGV 845
                                            F    +           +   L+ + G+
Sbjct: 753  LLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSGI 812

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
               TA  I+E    + F SL+D   RVD        +E+L  AGA D    SR   L  +
Sbjct: 813  SIETATRIVEERERESFVSLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQI 869

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
              I   A      +      +                           ++ R      + 
Sbjct: 870  GQINGVAPGQLDVQVVTQPPL----------------LPEPTQMELLGDDLRATSISTTD 913

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+   +  L + G+   +          I +A +V  +Q+  T  G  + ++   +   
Sbjct: 914  HPVRQVRDALNRRGVVQVDRLDGVEARRRIEVAGVVTHRQRPGTAGG--VTFLNLEDETG 971

Query: 1026 EYEANFFP 1033
                   P
Sbjct: 972  LLNVIVTP 979


>gi|313814758|gb|EFS52472.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL059PA1]
          Length = 1031

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 264/1028 (25%), Positives = 424/1028 (41%), Gaps = 103/1028 (10%)

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++ 
Sbjct: 2    AEAAEACGLSTIIGSELSIGVPE-----PQNGVVDPMGSHLLVLANGPEGYRRLAEALTD 56

Query: 119  MYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             YL++ G K      L  L E+      +LTG   G + +         AE  L     L
Sbjct: 57   AYLVEGGRKGRPVHDLDHLAEVADGHWTVLTGCRKGAVRQGLVRGML-QAEAELRRLVDL 115

Query: 178  FG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG D + V L  HR   D      + +LA  H L  VAT  + +   E +E    L AV 
Sbjct: 116  FGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVR 175

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                + + D            R    +  +DL     + V+     +     H   +   
Sbjct: 176  ARRSLDEMDGWL---PPGPVARLRSGAEMADLFSRHRDAVDNTVSVAERTAFHLKSVRPR 232

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +  +         + LR+    G      +  +A        + RL  ELN+I    F+G
Sbjct: 233  LPDQKVPDGHTPISWLRHLVEEGRRACYGEDPVA--------KDRLATELNLIENRGFAG 284

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV+D +++A+   I    GRGS A S   Y L IT +DP+ + L FERFL+  R   
Sbjct: 285  YFLIVSDIVEFAQSQGIL-CQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREEE 343

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D  
Sbjct: 344  PDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDAW 403

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             + +      P+                     D +  ++Q++ GL RH   H+AG+V+ 
Sbjct: 404  SRQMERRSVPPLPHDP-----------DGSEIPDDVTTLAQQVMGLPRHLGIHSAGMVLT 452

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-V 594
              P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D ++Q    
Sbjct: 453  REPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCGR 512

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
               L+ IP ++   Y +L    ++G FQ+ES     AL  ++P C  D+   + L RPGP
Sbjct: 513  FWTLASIPRNEPGVYDMLCRGDSIGAFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPGP 572

Query: 655  ID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            +    +  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD+
Sbjct: 573  VQGGAVHPYIRRRTGAEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADADL 632

Query: 713  LRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRRAM  K+  E +D    +   G + NGI    A  I+  +  FA++GF +SHA ++A 
Sbjct: 633  LRRAMGSKRRVERIDSLCTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFAG 692

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD---- 827
            + Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V     
Sbjct: 693  LVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADLE 752

Query: 828  --------------------------------FKVGDN----------RIYYSLAAIKGV 845
                                            F    +           +   L+ + G+
Sbjct: 753  LLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSGI 812

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
               TA  I+E    + F SL+D   RVD        +E+L  AGA D    SR   L  +
Sbjct: 813  SIETATRIVEERERESFVSLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQI 869

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
              I   A      +      +                           ++ R      + 
Sbjct: 870  GQINGVAPGQLDVQVVTQPPL----------------LPEPTQMELLGDDLRATSISTTD 913

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HP+   +  L + G+   +          I +A +V  +Q+  T  G  + ++   +   
Sbjct: 914  HPVRQVRDALNRRGVVQVDRLDGVEARRRIEVAGVVTHRQRPGTAGG--VTFLNLEDETG 971

Query: 1026 EYEANFFP 1033
                   P
Sbjct: 972  LLNVIVTP 979


>gi|67921905|ref|ZP_00515421.1| DNA polymerase III alpha subunit:Protein splicing (intein) site
           [Crocosphaera watsonii WH 8501]
 gi|67856121|gb|EAM51364.1| DNA polymerase III alpha subunit:Protein splicing (intein) site
           [Crocosphaera watsonii WH 8501]
          Length = 880

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 302/786 (38%), Positives = 452/786 (57%), Gaps = 43/786 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  LN ++D+    + PAIA+TD   ++ A+E  +      I+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLNALIDRALELEMPAIALTDHGVMYGAIELIKVCRNKSIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ +   D  +     K         V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62  IIGNEMYVINGDIKEKKKYKKY------HQVVLAKNTQGYKNLVKLTTISHLEGMQGKGI 115

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L+E   EGLI+ +    G I +       + A+     ++KLF D  Y+ 
Sbjct: 116 FARPCINKELLEEYH-EGLIVTSACLGGEIPQRLLAGDFKEAKAVAKRYQKLFKDDFYLE 174

Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR   + + ++A   ++ +VATN+S F+S  D EAHD L+ +    +++ + 
Sbjct: 175 IQDHGYVQDRIVNTGIAKIARDLDIKIVATNDSHFISCYDVEAHDALLCIQTRKLITDEK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           R R +   YLK+  EM  +F D    E +E  +      +  ++ +  +    I      
Sbjct: 235 RLRYSGTEYLKSADEMRLLFRDHLPDEIIEEAINNTLEVAEKIEPYKILGEPRIPNYPVP 294

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                ++ +   A  GL  RL     ++     DYR+RL++EL ++ RM FS YFL+V D
Sbjct: 295 AGHNPDSFVEEIAWDGLLTRLKC--RSRSEIPDDYRERLEYELKMLQRMGFSTYFLVVWD 352

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
           +I++A+ N IPVGPGRGS AGS+ AY L IT+IDP+   LLFERFLNP+R SMPD D DF
Sbjct: 353 YIKYARDNGIPVGPGRGSAAGSLVAYCLKITNIDPVHHGLLFERFLNPERKSMPDVDTDF 412

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
           C +RRDE+I+YV  KYG   VAQIITF  + +KA L+DV R L +PY++ D++ K+IP  
Sbjct: 413 CIERRDEMIQYVTRKYGEANVAQIITFNRMTSKAVLKDVARVLNIPYAESDKMTKMIPVS 472

Query: 483 PAHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
              P  L+ +  D      F+E    DP+V R ++++ ++EG  +    HAAG+VI   P
Sbjct: 473 RGKPAKLKVMVSDKTPTPEFKERYDNDPTVHRWVDMAIRIEGTNKTFGVHAAGVVISSEP 532

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
           L Q+VP+ ++      +TQ+ M+ +E  GL+K DFLGL+ LT +Q++ D + Q       
Sbjct: 533 LDQVVPLQKN-NDGAVITQYYMEDLESLGLLKMDFLGLRNLTTIQRTADLIKQNKRVELD 591

Query: 599 SLI--------------------PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                                  P D  +TY LL      GIFQLESSGM++ ++ ++P 
Sbjct: 592 LDQLPLDERKALEIIAKGTEKRLPPDVQKTYKLLEKGDLEGIFQLESSGMKEIVKNLKPS 651

Query: 639 CIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            IEDI ++++LYRPGP+D   I  + NRK+G+E IV  H L++P+LKET  V++YQEQ+M
Sbjct: 652 GIEDISSILALYRPGPLDAGLIPKFINRKHGREDIVYQHKLLEPILKETYAVLVYQEQIM 711

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
           ++AQ L+GYSL EAD+LRRAMGKK   EM K +E FI G++KNG+S+ IA ++FE + KF
Sbjct: 712 KMAQDLAGYSLGEADLLRRAMGKKKISEMTKHREIFIDGSTKNGVSQAIAEDLFEQMIKF 771

Query: 757 ADYGFN 762
           A+Y  +
Sbjct: 772 AEYCLS 777


>gi|237800158|ref|ZP_04588619.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023015|gb|EGI03072.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 728

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 304/743 (40%), Positives = 431/743 (58%), Gaps = 37/743 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +    SFVHL++H+ YSL++G + +  ++  +     PA+A+TD NN+ S ++F + A  
Sbjct: 1   MP--ASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVAVTDQNNMCSLVKFYKAAQG 58

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +GI+PI G  L +           G+     +  I LL   A+GY+ L EL+SR ++  Q
Sbjct: 59  SGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAQGYRNLTELISRGFIEGQ 108

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
               + I   W+ +  +EG+I L+    G I  A    +   A++ L  + ++F DR Y+
Sbjct: 109 RNGQIVIQRQWVAQ-ASEGVIALSAAKEGEIGMALLGGNPGEADELLREWLEVFPDRFYI 167

Query: 185 NLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +QR +R  D       V LA  H  PLVATN+  F+ + D+EAH+  + +     +   
Sbjct: 168 EVQRTNRTNDEEHLHAAVALAERHGAPLVATNDVRFIKQTDFEAHETRVCIGEGRALDDP 227

Query: 244 DR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            R    +   YLK+  EM  +FSDLPEALENTVEIA+RC+  +++    LP F   +   
Sbjct: 228 RRSHNYSDQQYLKSPEEMAELFSDLPEALENTVEIAKRCNIDVKLGTHFLPNFPIPDGMT 287

Query: 303 IQKEEENELRNKAVAGLEVR-----LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
           I    +   R  +  GLE R                 Q Y  RL+FEL++I +M F GYF
Sbjct: 288 I----DEYFRKVSFDGLEERLAVLLPKDTTEDYEARRQVYVDRLNFELDIIIQMGFPGYF 343

Query: 358 LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
           LIV DFIQWAK N +PVGPGRGSGAGS+ AY   ITD+DPL + LLFERFLNP+R+SMPD
Sbjct: 344 LIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPD 403

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
           FD+DFC D RD VI YV  KYG   V+QIITFGS+ AKA +RDV R     Y   DRL K
Sbjct: 404 FDVDFCMDGRDRVIEYVAEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSK 463

Query: 478 LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
           +IP +    +  +A   +   R+    D     + E++ KLEG+ R+   HA G+VI   
Sbjct: 464 MIPFEVGMTLE-KAYEQEEILRDFLKVDEEAAEIWEMALKLEGIVRNVGKHAGGVVIAPT 522

Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            L+   P+Y D   D  VTQF+   +E AGL+KFDFLGL+TLT++  +L  + +   KV+
Sbjct: 523 KLTDFSPIYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVN 582

Query: 598 -----LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                ++ IP DD  TY LL    T  +FQLES GM++ ++ ++PDC+ED+IALV+L+RP
Sbjct: 583 EAPLDIAFIPLDDMPTYQLLQRAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRP 642

Query: 653 GPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
           GP+ + +V +               +   +  + P+L  T G+I+YQEQVMQIAQ+++GY
Sbjct: 643 GPLQSGMVDDFINRKHGRAELSYPHVDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGY 702

Query: 706 SLSEADVLRRAMGKKIKEEMDKQ 728
           +L  AD+LRRAMGKK  EEM KQ
Sbjct: 703 TLGGADMLRRAMGKKKPEEMAKQ 725


>gi|83943312|ref|ZP_00955771.1| DNA polymerase III, alpha subunit, putative [Sulfitobacter sp. EE-36]
 gi|83845544|gb|EAP83422.1| DNA polymerase III, alpha subunit, putative [Sulfitobacter sp. EE-36]
          Length = 1048

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 258/1019 (25%), Positives = 439/1019 (43%), Gaps = 87/1019 (8%)

Query: 39   DQQPAIAITDTNNLFSALEFSQKACA--------AGI-QPIIGCQLDIDMQDNLKMTNQG 89
                A+AITD N+L   +                A + + +IG +L +   D        
Sbjct: 1    MGLNALAITDHNSLAGVVRAYSALKELRRELGADAPLPRLVIGARLILRDSD-------- 52

Query: 90   KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEG-LIMLT 148
                      V L    E Y RL  L++        K +  + L  L +      LI   
Sbjct: 53   -------THWVALPHDREAYARLTRLLTLGKRR-APKGACYLDLPDLVQGCAGMSLIA-- 102

Query: 149  GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTH 207
                  + +A   +S       ++T KK F   +++ +  R+ G D+        LA+  
Sbjct: 103  ------VPQASLKSSQPD----IMTLKKHFPADVFIGVAPRYDGSDQRYFDACATLAHRT 152

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
              P+VA  + L       +  DVL  + H+ T+     R     +  LK  ++M  +F+ 
Sbjct: 153  AAPMVAVGDVLMHHGARRQLADVLTCLRHNITIDQIGTRALPNAEKRLKPEADMKRLFAR 212

Query: 267  LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
             P AL  T +IA R SF L   +         +     +  ++ L   A  GL+VR  +G
Sbjct: 213  HPAALRRTTQIAARSSFCLSELSYDY-----PDEIADNETPQDRLARLASEGLKVRYPKG 267

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
            A A+         +++ EL ++  + F  YFL V D +Q+A+   I    GRGS A S+ 
Sbjct: 268  APARAI------AQMEKELALVKTLDFPAYFLTVHDIVQFARSKGIL-CQGRGSAANSIL 320

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
             Y L ITD+ P   +++ ERF++  R   PD D+DF  +RR+EVI+++  KYG  R    
Sbjct: 321  CYLLGITDVSPETITMVVERFVSEHRGEPPDIDVDFEHERREEVIQHIYAKYGRHRAGLC 380

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T    +++AA+ +VG+ + +       L   I          + +          L+DP
Sbjct: 381  ATVIHFRSRAAISEVGKVMGLSKDVTANLSGQIWGTSNGGPDPERVKQ----LGLDLSDP 436

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
             +   +++  ++ G  RH S H  G VI    L +L P+      D  + +++   I+  
Sbjct: 437  RLALTIKLIGEIIGFPRHLSQHVGGFVITKGRLDELCPIENAAMDDRTIIEWDKDDIDAL 496

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
             ++K D L L  LT ++KS D +AQ  G K  ++ IP DD +TY +L     +G+FQ+ES
Sbjct: 497  NILKVDILSLGMLTCIRKSFDLIAQHGGKKHSIASIPQDDAQTYDMLGVADAIGVFQVES 556

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLK 683
                  L  M+P  + D++  V++ RPGPI   +V+   NR+ G E +V     ++ +L 
Sbjct: 557  RAQMNFLPRMKPRELYDLVIEVAIVRPGPIQGGMVHPYINRRQGNEAVVFPSKELEDVLG 616

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGIS 742
            +T GV ++QEQ MQIA + +G+  SEAD LRR+M    +   + + +++FI+G    G  
Sbjct: 617  KTLGVPLFQEQAMQIAVVAAGFLPSEADQLRRSMATFRRMGTIGQLRDKFINGMLARGYE 676

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
               A N F  +  F +YGF +SHAAA+A+++Y +AW+K H+P  F    +  +       
Sbjct: 677  NAFAENCFSQIEGFGEYGFPESHAAAFAMLAYVSAWLKCHHPAAFACGLLNAQPMGFYAP 736

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEAS 857
             +  +DAR+ +I++ P  VNT   D  +         +      IKG     A  I+ A 
Sbjct: 737  AQIVRDAREHHIEVRPVCVNTSEWDNTLEKRSDGSLALRLGFRQIKGFREEDAGWIVAAR 796

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
             +  +   E    R     L+  VLE L  A A    G  R   L ++  I         
Sbjct: 797  GNG-YPDPEALWLRA---GLSPAVLERLAEADAYAVLGLGRRDALWAVKAI--------- 843

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
             + N    +F  +                +       +   +      HP+++ +P +  
Sbjct: 844  -KGNAPLPLFNDKIEGEGIAEQPVTLPAMHLGQEVVEDYVAMRLSLKAHPMELLRPAMT- 901

Query: 978  MGIKGYEESVATIRG----NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             G+  ++       G      I +  +V+++Q+  T  G  + ++T  +         +
Sbjct: 902  -GLTAHDALPEVPLGPMAQRPISVCGLVITRQRPGTASG--VVFLTLEDETGVSNVVVW 957


>gi|327333237|gb|EGE74959.1| error-prone DNA polymerase [Propionibacterium acnes HL097PA1]
          Length = 1031

 Score =  489 bits (1259), Expect = e-135,   Method: Composition-based stats.
 Identities = 276/1029 (26%), Positives = 440/1029 (42%), Gaps = 105/1029 (10%)

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++ 
Sbjct: 2    AEAAEACGLSTIIGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTD 56

Query: 119  MYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             YL++ G K      L  L EI      +LTG   G + +         AE  L     L
Sbjct: 57   AYLVEGGRKGRPVHDLDHLAEIADGHWTVLTGCRKGAVRQGLVRGML-QAEVELRRLVDL 115

Query: 178  FG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG D + V L  HR   D      + +LA  H L  VAT  + +   E +E    L AV 
Sbjct: 116  FGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVR 175

Query: 236  HSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                + + D          L++ +EM  +FS   +A++NTV +A R +F L+   P LP 
Sbjct: 176  ARRSLDEMDGWLPPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLKSVRPRLPD 235

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                +         + LR+    G         +A        + RL  EL++I    F+
Sbjct: 236  QKVPDG----HTPISWLRHLVEEGRRACYGDDPVA--------KDRLATELDLIEDRGFA 283

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV+D +++A+   I    GRGS A S   Y L IT +DP+ + L FERFL+  R  
Sbjct: 284  GYFLIVSDIVEFAQSQGIL-CQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREE 342

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D 
Sbjct: 343  EPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDA 402

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
              + +      P+                     D +  ++Q++ GL RH   H+AG+V+
Sbjct: 403  WSRQMERRSVPPLPHDP-----------DGPEIPDDVTTLAQQVMGLPRHLGIHSAGMVL 451

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D ++Q   
Sbjct: 452  TREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCG 511

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ IP ++   Y +L    ++G+FQ+ES     AL  ++P C  D+   + L RPG
Sbjct: 512  RFWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPG 571

Query: 654  PID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+    +  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD
Sbjct: 572  PVQGGAVHPYIRRRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADAD 631

Query: 712  VLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            +LRRAM  K+  E +D  + +   G + NGI    A  I+  +  FA++GF +SHA ++A
Sbjct: 632  LLRRAMGSKRGVERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFA 691

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--- 827
             + Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V    
Sbjct: 692  GLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADL 751

Query: 828  ---------------------------------FKVGDN----------RIYYSLAAIKG 844
                                             F    +           +   L+ + G
Sbjct: 752  ELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDNGDHRRDTHFAVRLGLSDVSG 811

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +   TA  I+E    + F SL+D   RVD        +E+L  AGA D    SR   L  
Sbjct: 812  INIETATRIVEERERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQ 868

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +  I   A      +      +                           ++ R  G   +
Sbjct: 869  IGQINGVAPGQLDVQVVTQPPL----------------LPEPTQMELLGDDLRATGISTA 912

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+   +  L + G+   +          I +A +V  +Q+  T  G  + ++   +  
Sbjct: 913  DHPVRQVRDALNRRGVVQVDRLDGVETRRRIEVAGVVTHRQRPGTAGG--VTFLNLEDET 970

Query: 1025 KEYEANFFP 1033
                    P
Sbjct: 971  GLLNVIVTP 979


>gi|313812386|gb|EFS50100.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL025PA1]
          Length = 1031

 Score =  489 bits (1259), Expect = e-135,   Method: Composition-based stats.
 Identities = 276/1029 (26%), Positives = 440/1029 (42%), Gaps = 105/1029 (10%)

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
            ++ A A G+  IIG +L I + +      Q     P    +++L +  EGY+RL E ++ 
Sbjct: 2    AEAAEACGLSTIIGSELSIGVPE-----PQNGVADPVGSHLLVLANGPEGYRRLAEALTD 56

Query: 119  MYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             YL++ G K      L  L EI      +LTG   G + +         AE  L     L
Sbjct: 57   AYLVEGGRKGRPVHDLDHLAEIADGHWTVLTGCRKGAVRQGLVRGML-QAEVELRRLVDL 115

Query: 178  FG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG D + V L  HR   D      + +LA  H L  VAT  + +   E +E    L AV 
Sbjct: 116  FGIDNVLVELTDHRAPTDSRDNDLLAELASRHSLLTVATTAAHYAGAEQFELACALSAVR 175

Query: 236  HSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                + + D          L++ +EM  +FS   +A++NTV +A R +F L+   P LP 
Sbjct: 176  ARRSLDEMDGWLPPGPVARLRSGAEMADLFSRHRDAVDNTVAVAERTAFHLKSVRPRLPD 235

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                +         + LR+    G         +A        + RL  EL++I    F+
Sbjct: 236  QKVPDG----HTPISWLRHLVEEGRRACYGDDPVA--------KDRLATELDLIEDRGFA 283

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            GYFLIV+D +++A+   I    GRGS A S   Y L IT +DP+ + L FERFL+  R  
Sbjct: 284  GYFLIVSDIVEFAQSQGIL-CQGRGSAAASAVCYVLGITVVDPVFYGLPFERFLSVLREE 342

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D+DF   RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D 
Sbjct: 343  EPDIDVDFDARRREEVIQYVYAKYGRRNAAQVADVITYRPRSAVRDMAKALGYSQGQQDA 402

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
              + +      P+                     D +  ++Q++ GL RH   H+AG+V+
Sbjct: 403  WSRQMERRSVPPLPHDP-----------DGPEIPDDVTTLAQQVMGLPRHLGIHSAGMVL 451

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
               P+ ++ P+         V Q++ +     GL+KFD LGL  L+ L  S D ++Q   
Sbjct: 452  TREPVGRICPIEPARMFGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSISFDLISQHCG 511

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                L+ IP ++   Y +L    ++G+FQ+ES     AL  ++P C  D+   + L RPG
Sbjct: 512  RFWTLASIPRNEPGVYDMLCRGDSIGVFQVESRAQIGALPRLKPRCFYDLAVEIGLIRPG 571

Query: 654  PID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P+    +  Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   + ++AD
Sbjct: 572  PVQGGAVHPYIRRRTGVEPVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTAADAD 631

Query: 712  VLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            +LRRAM  K+  E +D  + +   G + NGI    A  I+  +  FA++GF +SHA ++A
Sbjct: 632  LLRRAMGSKRGVERIDSLRTKLFEGMAANGIDDDTAQGIYARIESFANFGFAESHALSFA 691

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--- 827
             + Y +AW+K HYP  FLAA +  +            DAR+  +    P V    V    
Sbjct: 692  GLVYTSAWIKLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADL 751

Query: 828  ---------------------------------FKVGDN----------RIYYSLAAIKG 844
                                             F    +           +   L+ + G
Sbjct: 752  ELLDACCEELGSEELETGIDECLHDHDESEIGAFDPNRDDGDHRRDTHFAVRLGLSDVSG 811

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            +   TA  I+E    + F SL+D   RVD        +E+L  AGA D    SR   L  
Sbjct: 812  INIETATRIVEERERESFASLDDLARRVDLSG---EEVEALALAGAFDDLVGSRRGALWQ 868

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
            +  I   A      +      +                           ++ R  G   +
Sbjct: 869  IGQINGVAPGQLDVQVVTQPPL----------------LPEPTQMELLGDDLRATGISTA 912

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+   +  L + G+   +          I +A +V  +Q+  T  G  + ++   +  
Sbjct: 913  DHPVRQVRDALNRRGVVQVDRLDGVETRRRIEVAGVVTHRQRPGTAGG--VTFLNLEDET 970

Query: 1025 KEYEANFFP 1033
                    P
Sbjct: 971  GLLNVIVTP 979


>gi|282897054|ref|ZP_06305056.1| DNA polymerase III, alpha subunit [Raphidiopsis brookii D9]
 gi|281197706|gb|EFA72600.1| DNA polymerase III, alpha subunit [Raphidiopsis brookii D9]
          Length = 882

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 280/787 (35%), Positives = 439/787 (55%), Gaps = 44/787 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-GIQ 68
           SFV L +HS YSLL+GA  +  ++++  A    ++A+TD   ++ A+E  +   +  G +
Sbjct: 2   SFVPLHLHSDYSLLDGASQIPELVEQAIALGMNSLALTDHGVMYGAIELIKICRSKPGFK 61

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ 127
           PIIG ++ I   D  K   + +         V+L    +GY+ L++L +  +L   QGK 
Sbjct: 62  PIIGNEMYIINGDIEKQERRPR------YHQVVLAKNTKGYKNLVKLTTISHLKGTQGKG 115

Query: 128 ---SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 I  + L+E   EGLI+ +   +G I +A      + A K    +K +FG+  Y+
Sbjct: 116 IFSRPCINKNLLEE-HKEGLIVTSACLAGEIPQAVLGGKLETARKVARWYKGVFGEDFYL 174

Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +Q H    DR    ++V++A    +  +ATN+S ++S  D EAHD L+ +    +++  
Sbjct: 175 EIQDHGSQEDRIVNVELVKIARELGIKFIATNDSHYISCFDVEAHDALLCIQTGKLIADD 234

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            R R +   YLK+  EM  +F D    + +   +      +  ++V+  +    I     
Sbjct: 235 KRMRYSGTEYLKSTQEMQLLFRDHLTDDVIAEAIATTTEVAEKVEVYNIMDEPKIPTPPI 294

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                 +      A  GL  RL     ++      Y++RL++EL +I +M FS YFL+V 
Sbjct: 295 PTGHTPDTYTEEVAWQGLLKRL--NRKSRNEVDTLYKERLEYELKMIEQMGFSSYFLVVW 352

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           D+I++A+ +NIPVGPGRGS AGS+ AYA+ IT+IDP+   LLFERFLNP+R SMPD D D
Sbjct: 353 DYIKFARDHNIPVGPGRGSAAGSLVAYAMGITNIDPVHHGLLFERFLNPERKSMPDIDTD 412

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC ++RD+VI YV  KYG ++VAQIITF  L +KA L+DV R L +PY + D++ K+IP 
Sbjct: 413 FCIEKRDQVISYVTEKYGADKVAQIITFNRLTSKAVLKDVARVLDIPYGEADKMAKMIPV 472

Query: 482 DPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
               P  L+ +      +  F+     +  V R ++++ ++EG  +    HAAG+VI   
Sbjct: 473 VRGKPTKLKVMISDETPEPEFKAKYDKEQHVRRWIDMAMRIEGTNKTFGVHAAGVVISSE 532

Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
           PL ++VP+ ++      +TQ+ M+ +E  GL+K DF G +      K++D + Q      
Sbjct: 533 PLDEIVPLQKN-NDGSVITQYFMEDLESLGLLKMDFFGSEKSDPNSKTIDLIEQNRGYTI 591

Query: 598 LSLI--------------------PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
                                   P D  + Y LL +    G+FQLESSGM+Q +  ++P
Sbjct: 592 DPDDITRQERKAQKILAKGEYSTLPKDVAQAYSLLESGDLEGVFQLESSGMKQIVRDLKP 651

Query: 638 DCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
             IEDI ++++LYRPGP+D   I  + NRK+G+E I     ++ P+L ET G+++YQEQ+
Sbjct: 652 SNIEDISSILALYRPGPLDAGLIPKFINRKHGRESIDYESQILQPILNETYGIMVYQEQI 711

Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
           M+IAQ ++GYSL +AD+LRRAMGKK   EM KQ+E+FI GA+KNG+ K +A  +F  + K
Sbjct: 712 MKIAQDMAGYSLGQADLLRRAMGKKKVAEMQKQQEKFIDGATKNGVKKQVAEQLFADMLK 771

Query: 756 FADYGFN 762
           FA+Y  +
Sbjct: 772 FAEYCLS 778


>gi|297183532|gb|ADI19661.1| DNA polymerase III, alpha subunit [uncultured Alteromonadales
            bacterium HF4000_16C08]
          Length = 1023

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 253/1035 (24%), Positives = 428/1035 (41%), Gaps = 82/1035 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA--CAAGIQ 68
            +  L   S YS L GA S   ++   +     A+AITD  ++   +            I+
Sbjct: 2    YSELFCQSHYSFLTGASSPAQLVTTASFLGYDALAITDECSVAGVVRAYASITQQRLPIK 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G     D                   + VLL      Y  L  +++      +  + 
Sbjct: 62   LIVGSYFVFDD----------------TFAFVLLCPNKAAYSELCRIITNARRRSKKGEY 105

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                         + LI L                    +       +      ++  QR
Sbjct: 106  QLAEWDMRTIRHCK-LIWLP------------STQQAHDDYWAKWLSQHSAIHTHIGAQR 152

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
               G D +R +   +LA  ++ P+VA    L    +D     VL A    + VS   R  
Sbjct: 153  LLDGNDHHRFATYNRLAQHYDFPVVACTGVLMHHSDDLPLQHVLHATREHSTVSNLGRHA 212

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            ++           +         ++NT  +A  C F L       P  +           
Sbjct: 213  ISNAERSLRPINKIQKL-YPERWIDNTSVLAGSCHFSLNEVRYQYPAELVPTG----YTA 267

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     G+ +R  +G       ++  R  ++ E+ +I    ++ +FL + D +Q+A
Sbjct: 268  IAYLRQCVEKGIHIRFPEGL------SKKVRAIIEKEMKLIEEQDYAYFFLTLYDIVQFA 321

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+  I    GRGS A SV  Y L IT +DP + ++LFERF++ +R   PD D+DF   RR
Sbjct: 322  KQQGILY-QGRGSAANSVVCYCLEITAVDPRQINVLFERFISKERDEPPDIDVDFEHQRR 380

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +E+I+Y+  KYG ER A   T    + K+A +D G+AL    SQ+  + K I    +   
Sbjct: 381  EEIIQYIYKKYGRERTAIAATVICYRFKSAFKDAGKALGFNESQLSFVVKQINRRDSVIP 440

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                + +       +  D  V +L+ I+++L G  RH S H  G VI   PL +LVP+  
Sbjct: 441  WQSQLEE----LGLKGDDKRVKQLIHITEQLLGTPRHLSQHVGGFVISSGPLYELVPVEN 496

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV---DLSLIPFD 604
                +  + Q++   IE  GL+K D L L  L+ ++++   +                 D
Sbjct: 497  AAMPERTIIQWDKDDIETLGLLKVDVLALGMLSAIRRTFALINTHYPVPVSIPFITKLGD 556

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN- 663
            D + + ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI   +V+   
Sbjct: 557  DPQVFDMICKADTVGVFQIESRAQMSMLPRLKPRCYYDLVVQIAIVRPGPIQGDMVHPYL 616

Query: 664  -RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R++G E I      +  +L  T GV I+QEQV+Q+A + +G+S  EAD LRRAM    K
Sbjct: 617  LRRHGSESISYPSEEVKDVLSRTMGVPIFQEQVIQLAMVAAGFSGGEADQLRRAMASWKK 676

Query: 723  E-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +  + + +++ I G    G  +  A N+FE +  FA YGF +SH+A++AV++Y + W+K 
Sbjct: 677  DGRIFEFRDKLIKGMVARGYDENFAHNLFEQIKGFAGYGFPESHSASFAVLAYVSCWLKF 736

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNRIYY 837
            ++PVEF  A +           +  QDA++  I ++PP +N  C + +V    G  +I  
Sbjct: 737  YFPVEFYVALLNSWPMGFYSPSQLVQDAKRHKITVIPPCINQSCYEHQVVYHKGYKKIQL 796

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             LA IKG+G  TA  +      + F  +E     + S  + R  LE+L  AGA +    +
Sbjct: 797  GLAIIKGLGEATAHELCRQRPHEGFTRIET----IQSLNIRRDELEALASAGAFNALTGN 852

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R Q    + +                  +F       S  IT       N +     +  
Sbjct: 853  RYQARWRMMD------------NQASLPLFDDCPINDSLAIT------PNDADNLLEDYA 894

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
              G     HP+ +         I   ++       + +++   V  +Q   T  G  + +
Sbjct: 895  ATGLSTHDHPVALLHREKSLNYITTADKLHGKTHKSVVKVLGCVTGRQAPGTAAG--VTF 952

Query: 1018 VTFSEPAKEYEANFF 1032
            +T  +         +
Sbjct: 953  LTLEDHTGNMNVVVW 967


>gi|256825424|ref|YP_003149384.1| DNA polymerase III subunit alpha [Kytococcus sedentarius DSM 20547]
 gi|256688817|gb|ACV06619.1| DNA polymerase III, alpha subunit [Kytococcus sedentarius DSM 20547]
          Length = 1260

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 282/1128 (25%), Positives = 483/1128 (42%), Gaps = 122/1128 (10%)

Query: 8    SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
            S  F HL V SS+SL  G      ++D+ AA  Q  +A+TD + L+ A+ F++    AGI
Sbjct: 9    SADFAHLHVASSFSLQYGTSRPQELVDRAAAWGQSHLALTDRDGLYGAVRFTRACVEAGI 68

Query: 68   QPIIGCQLDIDM------------QDNLKMTNQGKTPFPTVPSIVLLVSTAE-------G 108
             P++G  L +                  +    G     +   + +L +          G
Sbjct: 69   VPVVGVDLAVAHDAPAGPPAARRAGRRQQPVRGGSWVDESHCRVRVLAAGRAAGHGNGVG 128

Query: 109  YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
            +  L  LVS  +     +   R   + L       + +L G     + +A        A 
Sbjct: 129  WAALCRLVSHTH-AAGERGEPRTTRA-LVAGAAPAVRVLLG-PDSDVGQAVLQRRRSEAR 185

Query: 169  KRLLTFKKLFGDR----------LYVNLQRHRGY-------DRYRESQVVQLAYTHELPL 211
            + L  + +   ++          + V L             ++    ++ QLA    +  
Sbjct: 186  RLLHGWVEAVAEQVGGTAAARRVVVVELVCSGAPAGSPGCTEQAV--RMWQLAQEVGVRA 243

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            V T        E     DVL A     ++  +   + T   +L + + MV +   L E  
Sbjct: 244  VLTAAVRHADPEGVVVADVLDAARQHVLLDPRHLDQRTSAAHLASTASMVRVAHWLAERA 303

Query: 272  ENTVEIARR-----------CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
                 +A +           C    +    I    + +       +  + LR        
Sbjct: 304  GQPPRVADQLLAATSGVAAECGLSARDDLGIGSVHLPEPEVLGFTDTADALRGLTAR--C 361

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                          +  R+R++ EL  I ++ +  YFL VA      ++    V   RGS
Sbjct: 362  RGAVDEMYRGAALRRRARERMEAELATIEQLGYPTYFLTVARVCDLIREVGGRVA-ARGS 420

Query: 381  GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
            GAGS+  + L I+ +DPLR  LL ERF +P R  +PD DID    RR E+   +  ++G 
Sbjct: 421  GAGSLVNHLLGISRVDPLRHDLLMERFCSPLRAELPDIDIDVESARRPEIYERILERFGA 480

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
             RV  +    + + + A+RDVG  L MP  +VD + K  P+  A         D    R 
Sbjct: 481  GRVTCVSMMETYRVRHAVRDVGAVLGMPPVEVDAIAKAFPHVRARDARAAI-RDLPELRA 539

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
            A L  P + R+ ++ ++L+GL RH + H  G+V+ +  L    P+  +     P++QF+ 
Sbjct: 540  AGLDAPRLQRMFDLVERLDGLPRHIALHPCGVVLSNLGLRDRTPVE-ESWIGFPMSQFDK 598

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----RGVKVDLSLIPFDDHETYHLLTTKG 616
              +E  GL+K D LG++  + +  ++D +      R    D   +P DD ET+ L+ +  
Sbjct: 599  DDVEDMGLLKLDVLGIRMQSAMAHTVDLVESTHGVRLDLDDEEQVPHDDAETFGLIGSTR 658

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSI 674
            TLG FQ+ES G R+ +    P   EDII  +SL+RPGP+ + +   + + + G  + + +
Sbjct: 659  TLGCFQIESPGQRELVGKFGPQTFEDIIIDISLFRPGPVKSDMITPFLSARQGWAEPLLM 718

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            HP ++  L+ T+GV+++ EQV+QI    +G SL+ +D  RRAMG    +  D  +  +  
Sbjct: 719  HPALEEHLRSTEGVVVFHEQVLQIITATTGVSLAHSDEARRAMGS--PDGRDAVERWWRP 776

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             A+  G +  +A  I+E+LA FA +GF K+HAAA+A+ +YQ+AW+KTHYP  F+A  +T 
Sbjct: 777  AAAARGFTGEVADRIWEVLAAFASFGFCKAHAAAFALPTYQSAWLKTHYPAHFMAGVLTH 836

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----------------------- 831
            +     K +    DAR+  ++I+   VN     ++V                        
Sbjct: 837  DPGMYPK-RLIMDDARELGVEILGLDVNASGEGYRVERVADSSGPGEWPASAGPGAPDPD 895

Query: 832  -----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                          +  +L  +KG+G   AR I+E    +P+ SL DF  R    +++R 
Sbjct: 896  LALDRVRQRARQWGVRIALTEVKGLGEDDARRIVE---GQPYSSLADFWQRA---QVDRP 949

Query: 881  VLESLVFAGALDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE-------- 930
            ++E +V AGA D F     R  LL  L +++++     + +  +     A +        
Sbjct: 950  LVERMVLAGAFDAFASPARRRDLLVELMDLERWRDPRPRGKRARLAGERAEQDRRRRAGH 1009

Query: 931  ------KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                  +      +            +  +E  VLG   + H L+ + P LR++G+    
Sbjct: 1010 GTQQVLELGVPRAVDATGLPPMALEEQVAHELDVLGMDVTAHVLEPHLPTLRELGVTPAR 1069

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +      G  + +A + V+ Q    R G R+ +VT ++P    +A FF
Sbjct: 1070 DVRTMRSGAEVLVAGVRVATQTPPVRSGRRVVFVTLNDPTGASDATFF 1117


>gi|68536799|ref|YP_251504.1| error-prone DNA polymerase [Corynebacterium jeikeium K411]
 gi|78099244|sp|Q4JTH1|DNAE2_CORJK RecName: Full=Error-prone DNA polymerase
 gi|68264398|emb|CAI37886.1| DNA polymerase III, alpha subunit [Corynebacterium jeikeium K411]
          Length = 1153

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 258/1080 (23%), Positives = 426/1080 (39%), Gaps = 143/1080 (13%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQ 68
            F  L   S+Y+ L GA     +++        A+A  D +  + A  F+     +G  + 
Sbjct: 96   FAELHASSAYNFLRGASQPEQMVEAARELGLSALACVDRDGFYGAARFATAVAESGADLA 155

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             + G +L +D+                   + +L    EGY RL  +++   + D  K S
Sbjct: 156  TVFGAELSLDVP------------------LTVLCKGREGYTRLSRVIADARMADPDKDS 197

Query: 129  VRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
            VR   L  L E      ++L                     +        FG D + V L
Sbjct: 198  VRYPSLPQLAEAAGGHWLVLL-----------------DWRRTDAQLVDFFGADNVVVEL 240

Query: 187  QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q      D  R  ++  LA  H L  + ++     + +         A+     ++  + 
Sbjct: 241  QHTMNPADADRNERLHALAVRHGLREIVSSAPTCATPKHSRLAGAKAALRERKDMAAAEP 300

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                         E +   +   E L   VE + + +        ++   +         
Sbjct: 301  TTHPVGGSWLRSGEEMLQLAGDCEWLARAVETSVQVAEECAFTLDLVAPNLPHFPVPEGY 360

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E   LR     G   R   G       A      +D EL  I ++ F GYFLIV D + 
Sbjct: 361  TEMTWLRAITERGGAQRY--GPRGSSAAANQAWATIDRELETIEQLGFPGYFLIVHDIVS 418

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +  +NNI    GRGS A S   +AL IT +D +   LLFERFL+P+R   PD D+D    
Sbjct: 419  FCHENNI-FCQGRGSAANSAVCFALGITTVDAVASGLLFERFLSPERDGPPDIDLDIESG 477

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+E I+YV ++YG E  AQ+    + + + A RD GRAL     Q+D   +     P  
Sbjct: 478  RREEAIQYVYSRYGRENAAQVANVITYRRRGATRDAGRALGYAPGQIDAWTRHPEQTP-- 535

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                                   D +  +++++    RH   H+ G+VI DRP++Q+VP 
Sbjct: 536  -----------------------DVVQNLAEQMLDHPRHLGIHSGGMVICDRPIAQVVPT 572

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604
                     V Q++       GL+KFD LGL  L  L  ++D +   RG +V+L  +   
Sbjct: 573  EWARMEGRSVVQWDKDDCAAVGLVKFDLLGLGMLEALHHAVDQVRAHRGREVELWRLDPT 632

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYN 662
            + E Y +L+    +G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y 
Sbjct: 633  ESEVYAMLSRADAVGVFQVESRAQMSTLPRLKPRTFYDLVVEVALIRPGPIQGGSVHPYI 692

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R+NG E +   HP ++P L +T G+ ++QEQ+MQ+A   +G+S +EAD LRRAMG K  
Sbjct: 693  RRRNGLEPVTFDHPCLEPALTKTLGIPLFQEQLMQMAVDAAGFSGAEADTLRRAMGSKRS 752

Query: 723  EEMDKQKERFISGA--SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             +  ++ ++       +KNGI   +A  +++ +  FA YGF +SH+ ++A + Y +AW K
Sbjct: 753  PQKMERLKKRFYQGLEAKNGIRGVVADRLWDKIVAFASYGFPESHSQSFASLVYYSAWFK 812

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-------- 832
             HYP EF  A +  +       +    DAR+  ++++P  VN   V              
Sbjct: 813  YHYPAEFCVALLRAQPMGFYSPQSLLADARRHGVEVLPVDVNDSDVQVDAVASLATPPRT 872

Query: 833  -----------------NRIYYSL---AAIKGVGTTTARHIMEASAD-KPFDSLEDFCSR 871
                              +I   L     +KG+    A  I+EA      F S+ED    
Sbjct: 873  NRPTGVHGLGRGTGEPVGQIRLGLSGAGGVKGISAEVAERIVEARERIGRFTSVEDLSR- 931

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
                 L    +E L  AGAL   G +R Q + +                 +   +     
Sbjct: 932  --EAGLTVAHVEKLARAGALGSLGLTRRQAVWAAGVA-----------ATERPGMLPGTS 978

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK-------------- 977
            G     +        ++     +E    G   + HP+ + +  L +              
Sbjct: 979  G-----VHAPALPGMSAFEMVASELATTGVTTAEHPVQLLREYLDEWHLRPAPRGVHPGD 1033

Query: 978  ------MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                    +   +  +    G  +R+A +V  +Q+  T  G  + +    +         
Sbjct: 1034 AAPRGGAAVVTADSLLRVPDGTRVRVAGVVTHRQRPATAGG--VVFFGLEDETGLANIVV 1091


>gi|271965758|ref|YP_003339954.1| DNA polymerase III subunit alpha [Streptosporangium roseum DSM 43021]
 gi|270508933|gb|ACZ87211.1| DNA polymerase III, alpha subunit [Streptosporangium roseum DSM
            43021]
          Length = 1152

 Score =  485 bits (1249), Expect = e-134,   Method: Composition-based stats.
 Identities = 268/1093 (24%), Positives = 455/1093 (41%), Gaps = 85/1093 (7%)

Query: 5    LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            +  S  FVHL+V S +SLL GA     ++ +       A+A+TD ++L  A+ F+     
Sbjct: 1    MPGS-EFVHLRVASGFSLLHGASRPQALVARAGGLGMSALALTDRDSLAGAVRFATACRT 59

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT--VPSIVLLVSTAEGYQRLIELVSRMYLL 122
            AG++P+ G  L ++   +    ++ +          +  L   A G+  L  ++S  +  
Sbjct: 60   AGVRPVFGADLAVEGARSAAAPHRDRLRGEDVGRCRVTFLARDASGWSALCRMISAAHAA 119

Query: 123  DQGKQSVRICLSWLQEI-GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-D 180
            D  +    +    L    G  GL++L G     +  A     +  A KRL  +++  G D
Sbjct: 120  D--RDEPVLSRQALAAHAGRGGLVVLLG-PDSDVGGAIVDRDAGTALKRLRAWQEGIGRD 176

Query: 181  RLYVNLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             + + +  H              +++  A    L  V TN   +         DVL A  
Sbjct: 177  AVRLEIVCHLSPGPGPGSLVLAGRMLAFAARQRLVPVLTNAVRYAERSGARVGDVLAACR 236

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
            H  +   + R      +                 A        R  +  L          
Sbjct: 237  H-RLPIGRARHANAEAYLKSPAEMTRVAEQVAAVAGLPAAAAGRLLACTLATARACTLDP 295

Query: 296  IEK--ECDDIQKEEENELRNKAVAG-----LEVRLAQGAIAKGYHAQDY-RQRLDFELNV 347
            +      D      E  L     AG     +  R   G  A+G  A     QRL  EL V
Sbjct: 296  VADLGIGDRRVHFPEPYLLGADPAGAADGVMRARCEAGLNARGMGADRVALQRLQEELAV 355

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            IAR+ ++ YFL VA+     +   + V   RGS AGS+  YAL I+ +DPLR  LL ERF
Sbjct: 356  IARLGYAPYFLTVAEITDMIRAMGVRVA-ARGSAAGSLAVYALGISGVDPLRHGLLMERF 414

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            L+  R S+PD D+D    RR EV R +  +YG ERVA +    + + ++A+RD G AL +
Sbjct: 415  LSTRRRSLPDVDLDVESARRPEVYRAILGRYGPERVAAVSAAATYRVRSAIRDAGAALGV 474

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
               ++D L    P+  A        A+  +     +    +  L ++ + L+GL R  + 
Sbjct: 475  DAGEIDALATAFPHIRARDARRAM-AELPQLAARGIRPDRLRLLWDLVEALDGLPRRTAM 533

Query: 528  HAAGIVIGDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            H   I++ D  L    P+          L ++QF+   +E  GL+K D LG++  + +  
Sbjct: 534  HPCAIIVSDATLLDRSPVQSVPAGAEGGLSMSQFDKDDVEALGLLKLDVLGVRMQSAIAH 593

Query: 585  SLDFLA----QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            ++  +A          D + +P DD   + L+ +  T+G FQ+ES G R  L  ++P+  
Sbjct: 594  AVAEIARVEGHSVAIDDPAQVPLDDPAAFALIRSAETVGCFQIESPGQRDLLSRLRPESF 653

Query: 641  EDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
             D+I  +SL+RPGP+   +   +   ++G+  +   H  + P+L ET GV+++ EQV++I
Sbjct: 654  ADLIIDISLFRPGPVAADMITPFLAARHGRAPVDLPHADLAPVLAETCGVVVFHEQVIRI 713

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
              +++G    +AD +RRA+      E ++ +  F + A+  G    +   ++  LA F  
Sbjct: 714  LAIMTGCDPGQADEVRRALADG--GEAERARTWFTAVATDRGYDPGVVERVWRTLAGFGS 771

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            +GF K+HAAA+A+ + Q+AW+K H+P  F AA +T +     K +    DAR+  + I+P
Sbjct: 772  FGFAKAHAAAFALPTLQSAWLKAHHPAAFYAAVLTHDPGMYPK-RLLLADARRHGVTILP 830

Query: 819  PSVNTPCVDFKVGD-----------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
              VN     +++               +  +LA +KG+       I+   A +P+ SL D
Sbjct: 831  LDVNHSAGPYRIEPLPRAGDTACGRFGVRLALADVKGITGAEVARIV---AGRPYTSLAD 887

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCF-------------GYSRMQLLQSLDNIQKYAQW 914
               R         + E LV AGALD               G +R  LL  +  + ++   
Sbjct: 888  CWQRARPSL---PIAERLVLAGALDALHGLSHGRGRRAGSGLTRRDLLIQVGELHRWTSA 944

Query: 915  VEK---------------NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
              +               + T +   +        ++          + +     E  +L
Sbjct: 945  SSRRPARRGSARPPVETGDGTAQQLPL----ALGAAETPRRNGLPDMSDADLVAAELDIL 1000

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G   S H +  Y P+LR + +           G  + +    V+      R G RI + +
Sbjct: 1001 GLDASRHLITDYHPLLRALAVTASSRLRGCSDGALVLVGGAKVAIATPPIRSGRRIMFCS 1060

Query: 1020 FSEPAKEYEANFF 1032
              +     E  FF
Sbjct: 1061 LDDGTGITEVTFF 1073


>gi|332139446|ref|YP_004425184.1| error-prone DNA polymerase [Alteromonas macleodii str. 'Deep
            ecotype']
 gi|327549468|gb|AEA96186.1| error-prone DNA polymerase [Alteromonas macleodii str. 'Deep
            ecotype']
          Length = 1029

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 256/1036 (24%), Positives = 440/1036 (42%), Gaps = 79/1036 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQ 68
            +  L   S YS L GA S   ++   +     AIAITD  ++   +    +    G  I+
Sbjct: 3    YSELFCQSHYSFLCGASSPAELVTTASFLGYEAIAITDECSMAGVVRAFDEITHQGLPIK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G                    F    S VLL      Y  L  +++      + K  
Sbjct: 63   LIVGSYF----------------IFDKTLSFVLLCPNKAAYSELCRIITNARRRSE-KGE 105

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             ++    L+ I     I L    SG +            +      +K      ++  QR
Sbjct: 106  YQLAEWDLRTIRHCKFIWL---PSGEV---------NEDKYWAQWLQKHPNIDAFIGAQR 153

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
               G D +R +    L  T+  P++A   +L    +      +L      T V +  R  
Sbjct: 154  LLDGRDHHRFAHYNHLQSTYAFPVIACTGALMHHADRLPLQHILHTTKVHTTVHEIGREA 213

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            ++       R+          + L NT  +A++ +F L+      P  +  E        
Sbjct: 214  LSNA-ERSLRTTHKIKKLYPEKWLANTHSLAQQFTFSLEELRYQYPAELVPEG----YTP 268

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR +   G+++R  +G         + RQ ++ EL +IA  ++  +FL + D +Q+A
Sbjct: 269  TSYLRERVEEGIKIRFPEG------ITSEIRQTIEKELRLIAEQEYEYFFLTIYDIVQFA 322

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+  I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF   RR
Sbjct: 323  KQQRILY-QGRGSAANSVVCYCLEITAVDPRQISVLFERFISKERNEPPDIDVDFEHQRR 381

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +E+I+Y+  KYG ER A   T    + K+A +DVG+AL    SQ+D + K I    +   
Sbjct: 382  EEIIQYIYKKYGRERTAIAATVICYRFKSAFKDVGKALGFSESQLDFVVKQINRRDSVIP 441

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                +AD          +  V +L+ +++ L G  RH S H  G VI   PL  LVP+  
Sbjct: 442  WKSQLAD----LGLNPEEKRVQQLISLTEALLGTPRHLSQHVGGFVISAGPLYDLVPVEN 497

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---VDLSLIPFD 604
                   + Q++   IE  GL+K D L L  L+ ++++   + ++      +       D
Sbjct: 498  AAMEARTIIQWDKDDIETLGLLKVDVLALGMLSAIRRAFSLINKQYPVETSIPFITKLGD 557

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN- 663
            D + + ++    T+G+FQ+ES      L  ++P    D++  +++ RPGPI   +V+   
Sbjct: 558  DKQVFDMICRADTVGVFQIESRAQMSMLPRLKPRRYYDLVVQIAIVRPGPIQGDMVHPYL 617

Query: 664  -RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R++G E I      ++ +L  T GV I+QEQV+Q+A + +G+S  EAD LRRAM    K
Sbjct: 618  IRRHGNETISYPSKEVEKVLSRTMGVPIFQEQVIQLAMVAAGFSGGEADQLRRAMASWKK 677

Query: 723  E-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            +  + + +++ I G +  G   T A N+FE +  FA YGF +SH+A++AV++Y + W+K 
Sbjct: 678  DGRIFEFRDKLIKGMTNKGYDSTFAHNLFEQIKGFAGYGFPESHSASFAVLAYVSCWLKF 737

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNRIYY 837
            ++PVEF  A +           +  QDA++ NI +  P VN    +  +     D  I  
Sbjct: 738  YFPVEFYVALLNSWPMGFYTPSQLVQDAKRHNIYVEAPCVNKSDTEHTLVTKGEDKYIQL 797

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  IKG+    +  I++      +  +E     +    +    LE+L  A A      +
Sbjct: 798  GLKLIKGLSEVASHKIVKNRPAAGYTHIEQ----IQHLSIKSNELEALASADAFRTISGN 853

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK-GTFSDKITLEKFSVENSSVRFENEQ 956
            R +    + +            T     +F   +  T      L+     + +     + 
Sbjct: 854  RYETRWRIMD------------TQTRLPLFDTVEVNTKQGYSPLKNKP--SDAQNLLEDY 899

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
               G   + HP+ + K   +   I      +     + +++   V  +Q   T  G  + 
Sbjct: 900  ASTGLSVNNHPISLLKRQHKLNDISWSNTLINKKNKSVVKVLGAVTGRQAPGTAAG--VT 957

Query: 1017 WVTFSEPAKEYEANFF 1032
            ++T  +         +
Sbjct: 958  FLTLEDDIGNINVVVW 973


>gi|237799621|ref|ZP_04588082.1| error-prone DNA polymerase [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331022476|gb|EGI02533.1| error-prone DNA polymerase [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 869

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 256/915 (27%), Positives = 422/915 (46%), Gaps = 62/915 (6%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           S  +  L   S++S   GA S   + ++       A+AITD   L   +   Q +   G+
Sbjct: 2   STDYAELHCLSNFSFQRGASSARELFERALRHGYTALAITDECTLAGIVRAWQASKDTGV 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
             I+G ++ I+                  P +VLLV    GY+ L +L++        K 
Sbjct: 62  PLIVGSEMHIENG----------------PKVVLLVENKAGYEALCKLITVARRR-ARKG 104

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
             R+    + E+  +GL+ +     G   +A                ++LF +RL++ ++
Sbjct: 105 EYRLLREDV-EVSLDGLLAIWLPDIGDDAQACLSQG--------NWLRELFAERLWLGVE 155

Query: 188 RHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQKDR 245
            HRG  D  R + ++ LA    +P VA+ +    +       D + A+ H T V      
Sbjct: 156 LHRGPDDDQRLADLLALAQALGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAEAGHL 215

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                + +L++   +   + D   A   +  IARRC+F L       P  +  +     +
Sbjct: 216 LFANGERHLRSLDTLAEHYPDWLLA--ESARIARRCTFDLDQLKYEYPHELVPKG----Q 269

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + LR     G+  R   G           R +++ EL +I   KF  YFL V D ++
Sbjct: 270 TSSSWLRELTERGIRRRWPNGLSTVA------RAQVEKELALIKEKKFDSYFLTVHDIVE 323

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+  +I    GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  D
Sbjct: 324 FARSQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISRERDEPPDIDVDFEHD 382

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EVI+YV  +YG  R A      +     A+RDV + L +P  Q++ L +        
Sbjct: 383 RREEVIQYVFRRYGRGRAALTAVASTYHGSGAVRDVAKVLGLPPDQINTLAEAFSRWSDS 442

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             S + + +           P + R+L ++ +L G  RH S H  G VI + PL  LVP+
Sbjct: 443 LPSPERLREY----GFNAETPVLKRVLTLTGELIGFPRHLSQHPGGFVISEHPLDTLVPV 498

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604
                +D  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +P D
Sbjct: 499 ENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKRWTLADLPGD 558

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662
           D +TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V+   
Sbjct: 559 DRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYL 618

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            R+NG+E +    P+++ + K T GV ++QEQVM++A + + Y+  EAD LRRAM    +
Sbjct: 619 RRRNGEEAVTYP-PMLESVFKRTLGVPLFQEQVMEVAIIAADYTPGEADQLRRAMAAWKR 677

Query: 723 EEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               D  +ER  +G  KNG     A  IFE +  F  YGF +SHAA++A+++Y + W+K 
Sbjct: 678 HGGLDPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKC 737

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------D 832
           H P  F  A +           +  QDAR+ +I+I P  V     D  +          +
Sbjct: 738 HEPAAFACALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSHWDCSLEPVEHPDRTRN 797

Query: 833 NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I   L  ++      A  I  A + +PF    D   R     L+ R  E+L  +GAL 
Sbjct: 798 LAIRLGLRMLRSFREDDALRIEAARSKRPFTDATDLAQRA---GLDSRAAEALADSGALR 854

Query: 893 CFGYSRMQLLQSLDN 907
                R +    +  
Sbjct: 855 GLIGHRHRARWEVAG 869


>gi|288803004|ref|ZP_06408440.1| DNA polymerase III, alpha subunit [Prevotella melaninogenica D18]
 gi|288334521|gb|EFC72960.1| DNA polymerase III, alpha subunit [Prevotella melaninogenica D18]
          Length = 871

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 285/867 (32%), Positives = 435/867 (50%), Gaps = 91/867 (10%)

Query: 2   TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            + +     +VHL VH++YS+L+G   +  ++DK  AD    +AITD   +F   EF+  
Sbjct: 11  QKRISSMEDYVHLHVHTNYSILDGQSKVTRLVDKAIADGMKGMAITDHGVMFGIKEFADY 70

Query: 62  ACAAG----------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
                           +PI GC++ +  +              +   +++L     GY+ 
Sbjct: 71  CAKVNKGRKEKGEEPFKPIFGCEMYVARRTMHDKDKS--MHDNSGYHLIVLAKNYTGYKN 128

Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
           LI+LVS  + +D      R     L++   EGLI+ T   +G +      +  + A +  
Sbjct: 129 LIKLVSNAW-VDGYYYRPRTDREQLEKYH-EGLIVCTACIAGEVPNKIIHDDIEGARESC 186

Query: 172 LTFKKLFGDRLYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSL 218
             + ++FGD  Y+ LQRH   D             +     +++ A  + + +V TN+  
Sbjct: 187 EWYHRVFGDDFYLELQRHEVKDPSLVANREAYPLQQKANKVLMKFAQEYGIKIVCTNDCH 246

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
           F  +E  EAHD L+ ++ +  +    R R +   + K R+EM  IFSD+PEA+ NT+EI 
Sbjct: 247 FEDKETAEAHDHLLCLSTNEDLDDPKRMRYSKQEWFKTRAEMNEIFSDIPEAMTNTLEIL 306

Query: 279 RRCSFILQVHAPILPRFIEKECDDIQKE-------------------------------- 306
            +       H PI+P F   E    ++E                                
Sbjct: 307 NKVETYNINHGPIMPFFPIPEDFGTEEEWKQKFSEGDLYKEFTTDENGESPLSPEEGQKV 366

Query: 307 ---------------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
                          E + L   A  G +             + + +  + FEL+V+  M
Sbjct: 367 IDRLGGYEKMYRIKFEADYLAKLAYDGAKKLYGDPL------SDEVKNHIRFELHVMKTM 420

Query: 352 KFSGYFLIVADFIQWAKKN-NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            F GYFLIV DFI  A+++ ++ VGPGRGS AGSV AY L IT IDPL++ LLFERFLNP
Sbjct: 421 GFPGYFLIVQDFINAARQDLDVMVGPGRGSAAGSVVAYCLGITQIDPLKYDLLFERFLNP 480

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
           DR+++PD D DF  D R  V+++V +KYGHE  A IIT+ ++  K +++DV R  ++P  
Sbjct: 481 DRVNLPDIDTDFDDDGRGRVLQWVMDKYGHENCAHIITYSTMATKNSIKDVARVEKLPLD 540

Query: 471 QVDRLCKLIPNDPAHPVSL---QAIADDSRFREARLADPSV-DRLLEISQKLEGLYRHAS 526
             + LCK IP      + +    AI      + A +++       ++ ++ LEG  R   
Sbjct: 541 VSNALCKAIPERLPDGMKMNLTNAIKCTPELQNAEVSEDIRERNTIKYAKMLEGTVRGTG 600

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDL-----PVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
            HA G +I   P+ + VP+      D      PVTQ++   IE  GLIK DFLGLKTL+ 
Sbjct: 601 IHACGFIICRNPIDEWVPISTATDPDFPEKKVPVTQYDGHVIESTGLIKMDFLGLKTLSE 660

Query: 582 LQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           L+++   + Q     +DL  IP DD  TY L     T+G FQ ES+GM++ L  + P   
Sbjct: 661 LKEACKVVKQTTGDVIDLEKIPIDDELTYQLYQRGQTVGTFQFESAGMQKYLRELHPTVF 720

Query: 641 EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
           ED+IA+ +LYRPGP+D I  +  RK+    +    P ++  LK+T G+ +YQEQVM +++
Sbjct: 721 EDLIAMNALYRPGPMDYIPDFIRRKHDPSLVKYDIPCMEKYLKDTYGITVYQEQVMLLSR 780

Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            L+ ++  E+D LR+AMGKK+K  +DK K +FI    +NG    I   I+    KFA Y 
Sbjct: 781 QLANFTRGESDALRKAMGKKMKAIVDKMKPKFIKQGQENGHDPQILEKIWSDWEKFASYA 840

Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEF 787
           FNKSHA  Y+ ++YQTA+MK HYP E+
Sbjct: 841 FNKSHATCYSWVAYQTAYMKAHYPAEY 867


>gi|315604150|ref|ZP_07879216.1| error-prone DNA polymerase [Actinomyces sp. oral taxon 180 str.
            F0310]
 gi|315313856|gb|EFU61907.1| error-prone DNA polymerase [Actinomyces sp. oral taxon 180 str.
            F0310]
          Length = 1096

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 281/1098 (25%), Positives = 470/1098 (42%), Gaps = 117/1098 (10%)

Query: 1    LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            +   +     +  L  HS++S LEG     +++++ A     A+AI D + ++S ++ + 
Sbjct: 1    MVGAVFNERRYAELHAHSAFSFLEGTDEPASMVEEAARLGLDALAILDVDGMYSTVQTTV 60

Query: 61   KACAAGIQPIIGCQLDID--------MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
             A   G+  I G +L +                             + +L ++  GY  L
Sbjct: 61   AARRCGLPVIYGAELTLGSNALRSILPGSCGTGWGLPPGAEDPGIRLPVLTASPTGYANL 120

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
            +  +S   L  +G++S    L  +   G+ GL +LTGG+ GP+ RA        A + + 
Sbjct: 121  VGAMSERALATRGERSPTHSLDDVGGAGS-GLRVLTGGARGPLMRALRAGGPVWARRVVR 179

Query: 173  TFKKLFG-DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
               ++ G D + +  Q   G  +     +  LA      LVAT  +   S       DVL
Sbjct: 180  ALSEVCGADNVLIEWQAAAGDGQEVGDVLADLARQTGTRLVATTGARMSSPSKQALGDVL 239

Query: 232  MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
             A    + + + +        +L++  EM  +     E+LE+  ++A   +F L++ AP 
Sbjct: 240  TATRLRSSLEEANAHLGAHRAFLRSAREMAHLHRSHLESLEHACDVAADAAFDLRLVAPK 299

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            LPR    +        +  L +    G + R                + +D EL+VIAR+
Sbjct: 300  LPRTRVPDG----HTNDTWLAHLTHQGAQQRYG-----TRAQHPRAWETIDHELDVIARL 350

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             F+GYFLIV + + +  +  I    GRGS A S   Y L IT +D +R +LLFERFL+  
Sbjct: 351  GFAGYFLIVKEIVDFCAERGIL-CQGRGSSANSAVCYCLGITAVDAVRHNLLFERFLSDA 409

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD D+D    RR+EVI++V + YG  R AQ+    + + ++A+RD  RAL  P   
Sbjct: 410  RSGPPDIDVDIEACRREEVIQHVYSTYGRNRAAQVANVITYRPRSAMRDAARALGYPAGA 469

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                 +     P                           + E +  L  L RH   H+ G
Sbjct: 470  AQAWSRGKGQTP-------------------------TLVREAADALARLPRHMGIHSGG 504

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL----- 586
            +V+ D+P+S++ P+    R    V Q++ +    AGL+KFD L L  LT L+ +      
Sbjct: 505  MVLTDQPVSRICPVRWAAREGRTVLQWDKEDCADAGLVKFDLLSLGMLTALRIAFDELNG 564

Query: 587  -------------------DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
                                 L +R + + L  +P +D   Y LL    T+G+FQ+ES  
Sbjct: 565  SNRSADTLGRAPLRGWAPRPLLGRREMPLGLHTLPEEDPRVYDLLCAADTVGVFQVESRA 624

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKET 685
                L  ++P C  DI+  V+L RPGPI       Y  R+ G+E +  +HPL++P L++T
Sbjct: 625  QMNTLPRLKPRCFYDIVVEVALIRPGPIQGRAVNPYLRRRAGREAVTYLHPLLEPALRQT 684

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKT 744
             GV ++QEQ+M+IA   +G S ++AD LRRAM  K+  E M+  +   ++G +  GI   
Sbjct: 685  LGVPLFQEQLMRIAADAAGLSGAQADQLRRAMGAKRSSERMEALRADLMTGMAARGIDAP 744

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
                IF  L  FAD+GF +SH+ ++A I Y +AW+K H P  F AA +  +         
Sbjct: 745  TRERIFGQLKGFADFGFPESHSFSFAHIVYASAWLKVHAPEHFYAAILASQPMGFYSPAT 804

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDN-----------------------------RI 835
              QDAR+  ++++ PSVN   +D  V                                 +
Sbjct: 805  LVQDARRHGVRVLAPSVNDSLLDASVERGATSASSYRAGRSDPLPSRQIVPVDVDPSLAV 864

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L+ ++G+G   A  I+EA  +  F+S  D   R   ++     +E L  +GAL+C G
Sbjct: 865  RIGLSQVRGLG-KAAERILEARKEGAFESQADLARRAHLRE---GDMEKLALSGALECLG 920

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R + + +   +       E +       +   E G              +      ++
Sbjct: 921  VGRREGMWAAGAL----AVPEADSAQWQPFLPGTEVGARP-----PTLPSPSRVELMRSD 971

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
             R +G     HP    +  L   G+    E    + G  + +A +V  +Q+  T  G+ +
Sbjct: 972  MRTMGLTPGEHPFSSVRGELPD-GVLKARELGEHLDGRIVDVAGVVTHRQRPHT--GAGV 1028

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +++  +       +  P
Sbjct: 1029 TFLSLEDETGFVNVSISP 1046


>gi|158425528|ref|YP_001526820.1| DNA polymerase III alpha subunit [Azorhizobium caulinodans ORS 571]
 gi|158332417|dbj|BAF89902.1| DNA polymerase III alpha subunit [Azorhizobium caulinodans ORS 571]
          Length = 1175

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 238/1124 (21%), Positives = 429/1124 (38%), Gaps = 152/1124 (13%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS--------- 59
             S+  L   +++S L GA     ++ +        I I D N +   +            
Sbjct: 26   SSYAELAAATNFSFLHGASHPAEMVARAMELGLTGIGIADRNTVAGVVRAYAAVRDAPEK 85

Query: 60   ----------------------QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
                                  + AC   ++  +G +                      P
Sbjct: 86   ARAALAAAKERRGELPELTEAEKTACEVKLKLAVGTRFVFADG---------------TP 130

Query: 98   SIVLLVSTAEGYQRLIELV---------------------------------SRMYLLDQ 124
             I+      + + R+  L+                                 S     + 
Sbjct: 131  DIIAYPEDRKAWGRITRLLTRGNLRAVKGGCILNFEDLLEHLEGLLLIVMPQSTAAPQEA 190

Query: 125  GKQSVRICLSWLQEI----------------GTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
             +  V    +  +E                  + G + L    +            +  E
Sbjct: 191  HRAPVGYDFADQEEAEDAPPEAGGDPEASGVRSFGHLALVPPPA--------PTRPEGLE 242

Query: 169  KRLLTFKKLFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              L         R+++    HR G D  R +++ +LA    +PL+ATN+ L+ SE+    
Sbjct: 243  AVLARLAAEAPGRVWLGAALHRRGSDGRRLARLRRLASAARVPLLATNDPLYASEDRRPL 302

Query: 228  HDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            HDVL  +   T +    R      + +++  +EM  +F   PEAL  T  +  R  F L 
Sbjct: 303  HDVLTCIREGTTLEAAGRRLEANGERHIRTPNEMARLFRACPEALLETQCLLERIGFSLG 362

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
                  P     E        ++ L +          A  A       +  +  L  E  
Sbjct: 363  DLKYEYPHEPVPEGW----APQDWLEHLVTE------AAHARYGAVLPEKVKALLAEEFA 412

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPV-GPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            +I + KF+ YFL V D +++A+    P+   GRGS A S+  + L IT +DP++++LLF 
Sbjct: 413  LIRQEKFAYYFLTVHDLVRFARAQEPPILCQGRGSAANSIVCFLLGITSVDPVQYNLLFS 472

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            RF++ DR   PD D+DF  +RR+EV++YV  +YG  R     T    + ++A+R+V + L
Sbjct: 473  RFVSEDRGEPPDIDVDFEHERREEVMQYVYRRYGRHRAGIAATVIHYRGRSAVREVSKVL 532

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
             +      RL  L+    +  +  + + +     +          L           RH 
Sbjct: 533  GLTEDVSSRLAGLVWGSHSGDMDARRMQEAGFDPDNPEMARLRFILEP--LLSAPFPRHL 590

Query: 526  STHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            S H  G V+    L + VP++    +D    +++   I+  GL+K D L L  LT ++K+
Sbjct: 591  SQHVGGFVLTQDRLDETVPIHHAAMADRSFIEWDKDDIDVLGLMKVDVLALGMLTCIRKA 650

Query: 586  LDFLAQRGVKVDLSLIPF--DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
             + +   G+      +    DD   Y +L    ++G+FQ+ES      L  ++P  + D+
Sbjct: 651  FELMRAHGLGEKTLEVDLASDDEAVYDMLCKGDSIGVFQVESRAQINMLPRLKPRKLYDL 710

Query: 644  IALVSLYRPGPIDNIVVYNNRK-------NGKEKIVSIHP--LIDPMLKETQGVIIYQEQ 694
               V++ RPGPI+  +V+   +                HP   +  +L ET GV ++QEQ
Sbjct: 711  TIQVAIVRPGPIEGEMVHPYLRRRAGLEDWSFPSPTPPHPANELHDLLGETYGVPLFQEQ 770

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
             M++A + + ++  +A+ LRRAM        +   +   + G  + G ++  A+  F+ +
Sbjct: 771  AMKLAIVAADFTPRQANGLRRAMATFRNPGTIHSFRAMMVEGMVRRGYTRDFALRCFKQI 830

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              F  YGF +SHA ++A + Y +AW+K H+P  F  A +  +        +  +DAR+  
Sbjct: 831  EGFGSYGFPESHALSFARLVYVSAWIKCHHPAVFACALLNSQPMGFYAPAQIVRDAREHG 890

Query: 814  IQIMPPSVNTPCVDFKVGDNR-----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
            +++ P  VN    D  + +       +      ++G     A  I+ A A  PF S+ED 
Sbjct: 891  VEVRPVEVNASEWDNTLEEAANGRLALRLGFRQVEGFRELWAAEIVAARASGPFSSVEDL 950

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              R     L R  L  L  A AL   G  R   L  +           +        +FA
Sbjct: 951  ARRAH---LPRAGLRLLADADALRSLGLERRDALWEV-----------RRTPEGELPLFA 996

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
              +               +++ +   + +       GHP+   +P+  + G+    ++ A
Sbjct: 997  AARAGELKAERDLPLPAMSAAEQVAVDYQTTRLSLKGHPMAFLRPLFAERGVLSSAQTAA 1056

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               G  +R A +V+ +Q+    KG+   +VT  +         +
Sbjct: 1057 ARAGAKVRTAGIVLIRQRPG--KGNA-IFVTLEDETGITNVLIW 1097


>gi|269218398|ref|ZP_06162252.1| putative DNA polymerase III dnae2 [Actinomyces sp. oral taxon 848
            str. F0332]
 gi|269211509|gb|EEZ77849.1| putative DNA polymerase III dnae2 [Actinomyces sp. oral taxon 848
            str. F0332]
          Length = 1187

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 290/1131 (25%), Positives = 463/1131 (40%), Gaps = 142/1131 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +  L VHS+YS L+GA    +++ +    +  A+A+TD       ++ +  A  AG+  +
Sbjct: 36   YAELHVHSAYSFLDGASLPADLVARACELELQALAVTDHGGFPGVVQLASAARTAGLPAV 95

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +L +  +D            P    IVLL    EGY+RL   V    L    K   R
Sbjct: 96   IGTELTLLSEDR------SAQADPPGEHIVLLARDPEGYRRLSRTVGEAMLASGEKNRAR 149

Query: 131  ICLSWLQEI------------------GTEGL---------------------------I 145
              L  L                       EGL                           I
Sbjct: 150  YELEDLAAASGGNWMVLSGCRKGGVRRALEGLEGQGAEGSRGGLPLEGAGSRERADCLGI 209

Query: 146  MLTGGSSG--------PIDRAFFFNSS-----QVAEKRLLTFKKLFG-DRLYVNLQRHR- 190
              + G +G        P   AF   S        A +++   + LFG   + V L     
Sbjct: 210  AGSPGIAGGRRNSGFNPGASAFSGPSPALWDVDAAVEQVRRLESLFGKGNVAVELTNSGA 269

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              DR R   +V+ A    +P +AT N  +    D +  DV  A    T + + D      
Sbjct: 270  PLDRERCRALVETANRAGVPYLATGNVHYARPRDRDVADVFAATRARTTLEEIDPFLPAN 329

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              +L++  +M+S+  D PEA+     I   C+F L + AP LP F   E       E + 
Sbjct: 330  GSHLRSGGQMLSLHRDHPEAVAEAARIGAECAFDLALVAPDLPDFPVPEG----HTEASW 385

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR         R                + +D EL+VI  + F GYFLIV + + + +  
Sbjct: 386  LRCLTRERALKRYG-----PRSSNPRAWEVIDHELDVIVGLGFPGYFLIVCEIVDFCRSR 440

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I    GRGS A S   +AL IT +D +R  +LFERFL+P R   PD D+D   DRR+EV
Sbjct: 441  GIW-CQGRGSSANSAVCFALGITAVDAVRHKMLFERFLSPGRSGPPDIDVDIESDRREEV 499

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I++V  +YG +  AQ+    S + ++A+RD  +AL     QV+   + + +      +  
Sbjct: 500  IQHVYERYGRKCAAQVANTISYRPRSAIRDAAKALGYEEGQVEAWLRSVEH---KVPAKA 556

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
             +   + +  A         + +++ +++ L RH   H  G+V+ DRP+  + P      
Sbjct: 557  DVGGSAGYEPAGYEADVPAAVADLASRMQRLPRHLGIHTGGMVLCDRPVIDVCPAGWARM 616

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ------RGVKVDLSLIPFD 604
                V Q++     +AGL+KFD LGL  LT L+KS   L         G  + L  +P +
Sbjct: 617  PGRTVLQWDKDDCAEAGLVKFDLLGLGMLTALRKSYTQLTDAGIAGSDGKPLGLHNLPQE 676

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662
            D   Y LL    T+G+FQ+ES      L  ++P+C  DI+  V+L RPGPI       Y 
Sbjct: 677  DPRVYALLQAADTVGVFQVESRAQMATLPRLRPECFYDIVIEVALIRPGPIQGDAVSPYL 736

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKI 721
             R+ G+E +   HPL  P L++T GV ++QEQ+MQIA  ++G++ ++AD LR+AM  K+ 
Sbjct: 737  ARRRGREPVTYPHPLTKPALEKTLGVPLFQEQLMQIAIDVAGFTPAQADRLRKAMGAKRS 796

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E M + K    SG +  G+   +   I++ L  FA++GF +SH+ ++A + Y +AW+K 
Sbjct: 797  HERMSELKSELYSGMASKGVPPRVREEIYDKLDAFAEFGFPESHSFSFAYLVYASAWLKV 856

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----------- 830
            H+P  F A  +  +       +    DAR+  + +  P V     +  V           
Sbjct: 857  HFPEHFYAGILAAQPMGFYSPQSLVADARRHGVHVASPCVVRSLGEASVRKRGAAERDVA 916

Query: 831  ------------------------------GDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                                          GD  +   L +++G+G      I++A    
Sbjct: 917  KCGGERAEMECDEPECGDGAAASTRLVDPHGDLEVRLGLDSVRGLGAAAVSRILKARQGA 976

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
            PF    D   R    +L R  LE+L  AGAL   G  R + + +   +   A    + + 
Sbjct: 977  PFTDAADMARRA---RLGRGQLEALAAAGALQALGVGRREGIWAAQAL---ADKTVQGKG 1030

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                 +   E        T               +    G     +P    +  L   GI
Sbjct: 1031 WYQPTLPGTESIG-----TAPALDEMTEQEAAIADISSTGVSAGSYPTQFLRGDLAGRGI 1085

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                +      G  +R+A +V  +Q+  T  G  + +++  +         
Sbjct: 1086 LKVSDLGEAPVGERVRVAGVVTHRQRPWTATG--VTFISLEDETGILNVVC 1134


>gi|92118176|ref|YP_577905.1| error-prone DNA polymerase [Nitrobacter hamburgensis X14]
 gi|91801070|gb|ABE63445.1| error-prone DNA polymerase, DnaE-like protein [Nitrobacter
            hamburgensis X14]
          Length = 1164

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 253/1109 (22%), Positives = 432/1109 (38%), Gaps = 132/1109 (11%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA----CA 64
            PS+  + + +++S L GA      + + +  + P I I D N L   +    +       
Sbjct: 8    PSYAEIGIATNFSFLHGASHPQEYVHQASELRLPIIGIADRNTLAGVVRAYAELGNPELR 67

Query: 65   AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            +  + +IG +L                     P I++     + Y RL  L++R      
Sbjct: 68   SKPRLLIGSRLVFIDG---------------TPDILVYPRDRDAYGRLCRLLTRGK-RAA 111

Query: 125  GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             K    + L  L E     L++LT      +   F    +  A K L   ++     +++
Sbjct: 112  EKGECHLGLDDLLEFSEGQLLVLT------LPHRF---DTTTALKVLDRLRQSRAAGVWL 162

Query: 185  NLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
                 +RG DR R  ++ ++A    +PL+ATN  L+         DVL  +     V   
Sbjct: 163  AASLLYRGDDRRRLLRLRRIATAARVPLLATNEVLYHHPARRPLQDVLTCIREKATVHAI 222

Query: 244  DRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             R      + YLK   EM  +F D+PEA+  TV +A R +F L       P         
Sbjct: 223  GRKLEANAERYLKPTDEMARLFRDIPEAIAETVTLASRIAFTLDQLKYQYPDEPVPPG-- 280

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              K  +  L +   AG                   R+ L  EL +I ++ ++ YFL V D
Sbjct: 281  --KTAQRRLEDLTWAGAHKYFP------VRIPPKTRKVLHKELRLIRQLNYAHYFLTVHD 332

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             + WA+  NI    GRGS A S   Y L IT ++P    LLFERF++ +R+  PD D+DF
Sbjct: 333  IVHWARSRNIL-CQGRGSAANSAVCYVLGITAVNPAETDLLFERFISKERLEPPDIDVDF 391

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+EV++YV  +YG  R A I T    + ++A+RDVG+AL +       L   +   
Sbjct: 392  EHSRREEVMQYVYRRYGRHRAAIIATVIHYRPRSAIRDVGKALGLTEDVTAALADTVWGS 451

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                VS   +    R       +P + R + ++ +L G  RH S H  G V+    L   
Sbjct: 452  WGDGVSDMQV----RQAGFDPRNPMLRRAVALATELIGFPRHLSQHVGGYVLTQDRLDTY 507

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLI 601
            VP+      D    +++   ++   ++K D L L  LT ++K  D +A+    + +L+ +
Sbjct: 508  VPIGNAAMDDRTFIEWDKDDVDALRMMKVDVLALGMLTCIRKCFDLIARHKGKRWELATV 567

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
            P +  E Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+
Sbjct: 568  PREQREVYDMLCKGESLGVFQVESRAQMNMLPRLKPRTFYDLVIEVAIVRPGPIQGDMVH 627

Query: 662  N---NRKNGKEKIVSIHP------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                 R    E I   +P       +  +L +T GV ++QEQ M+IA   + ++  EA+ 
Sbjct: 628  PYLKRRAMKPEDIDYPYPKGGDRNELRNVLHKTLGVPLFQEQAMRIAIEAAKFTSQEANG 687

Query: 713  LRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRRAM        +   +E+ ++     G     A N FE +  F  YGF +SHAA++A 
Sbjct: 688  LRRAMATFRNVGTIGTFQEKMVNSMIARGYDPVFAKNCFEQIKGFGSYGFPESHAASFAQ 747

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            + Y ++W+K  +P  F    +  +        +   DAR+  + + P  V+       + 
Sbjct: 748  LVYVSSWLKRFHPDAFCCGLLNSQPMGFYAPAQIVGDARKNGVAVRPIDVSFSYSQNTLE 807

Query: 832  DN-----RIYYSLAAIKG----------VGTTTARHIMEA---SADKPFDS-LEDFCSRV 872
            +       +      I G          +    A+H+  A       P    L +F + V
Sbjct: 808  ERAGRHYAMRLGFRQIDGFKWVDKDEAKLKQDQAKHLSSASSPRTRGPITPVLNEFSTHV 867

Query: 873  DSKKLNRRVLESLVFAGALDCFGYS----------------------RM----------- 899
                      E L  + A    G                        R            
Sbjct: 868  SGHS------ERLALSQAERSKGPHVRGDDETLCAGDWGERIVAARQRRPFTSIEDFARD 921

Query: 900  --------------QLLQSLDNIQKYAQWVEKNRTNK-HENIFAHEKGTFSDKITLEKFS 944
                             +SL   ++ A W  +   +     +F                 
Sbjct: 922  TKLPKRALILLADADAFRSLGLDRRAALWAVRRLPDDVPLPLFESAIARELPDERAAPLP 981

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                  +   + + +     GHP++  + +L +  +    E         +R A +V+ +
Sbjct: 982  QMPLPEQVVADYQTVRLSLKGHPMEFLRTMLTRERVVSCAEVCHANDKRRVRCAGVVLVR 1041

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            Q+  + KG  + ++T  +         +P
Sbjct: 1042 QRPGSAKG--VVFMTLEDETGIANIVVWP 1068


>gi|110677739|ref|YP_680746.1| DNA polymerase III, alpha subunit [Roseobacter denitrificans OCh
           114]
 gi|109453855|gb|ABG30060.1| DNA polymerase III, alpha subunit [Roseobacter denitrificans OCh
           114]
          Length = 991

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 235/996 (23%), Positives = 401/996 (40%), Gaps = 69/996 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------- 63
           F  L + S++S L+GA      + + AA    AIAI D N +   +    +A        
Sbjct: 2   FAELNITSNFSFLKGASHPEEYMSRAAALGIEAIAIADENTVAGIVRAYAQARDIARQVR 61

Query: 64  ------AAGIQPIIG----CQLDIDMQD---NLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
                 AA  Q  IG      L +         ++    +  F     I  L     G+ 
Sbjct: 62  ERQAWEAANDQ--IGPALPAGLRVAPATLYATPRLIPAARLVFADACDITALPENRAGWG 119

Query: 111 RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
            L  L+S      + K +  +    L E G    ++L   + G    A          + 
Sbjct: 120 ALCRLLSTGRQRAE-KGACDLRQQDLLEGGCGLQLILWPQAQGVPCGA------GGWVQT 172

Query: 171 LLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                  FG ++++ L   + G D  R + + + A    LP VA+   +       +  D
Sbjct: 173 ARQLTHRFGGKIHIGLFPQYDGRDPQRFADLTEQARRLGLPTVASAAPVMHHGARRKLAD 232

Query: 230 VLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
           V+ A+     V    R      +  L++ +EM  +F     A++    +A+   F L   
Sbjct: 233 VVTAIRAGCRVDDLGRDALPNSEARLRSEAEMRRLFKGFDSAVDRAHTLAQSLQFSLDE- 291

Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                R+         +     LR  A  GL  R   GA      +    + L+ EL +I
Sbjct: 292 ----LRYEYPSEIAENETPSGRLRRLAYEGLAWRYPAGA------SDKVHRLLEHELTLI 341

Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
            ++K+  YFL V D + +A+  +I    GRGS A SV  Y L +T + P   +++FERF+
Sbjct: 342 GKLKYEPYFLTVRDIVAFARSRDIL-CQGRGSAANSVVCYCLGVTSVSPEIGTMVFERFV 400

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
           +  R   PD D+DF  +RR+EVI+++  +YG  R     T    + K A+R+VGRA+ + 
Sbjct: 401 SEARNEPPDIDVDFEHERREEVIQHIYERYGRHRAGLCATVVHYRVKRAIREVGRAMGLS 460

Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
              +  L   +    +          +               L+          RH S H
Sbjct: 461 EDTISALSSQLWGFFSTKGIEAERMAEIGLDANDRRLQQTLALVHEINGF---PRHLSQH 517

Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD- 587
             G VI +  L +LVP+         V  ++   IE  G++K D L L  LT ++K+ D 
Sbjct: 518 VGGFVITEGRLDELVPIENATMEGRTVICWDKDDIEALGILKVDVLSLGMLTCIRKAFDL 577

Query: 588 FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
                 V   L+ +P +D   Y +L    ++G+FQ+ES      L  M+P C  D++  V
Sbjct: 578 MQMHHNVSHTLASLPPEDPAVYDMLCRADSIGVFQVESRAQMNFLPRMRPRCFYDLVIEV 637

Query: 648 SLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
           ++ RPGPI   +V+    R+NG+E++      +  +L +T GV ++QEQ MQIA + +G+
Sbjct: 638 AIIRPGPIQGDMVHPYIRRRNGEEEVSFPSDELGEVLGKTLGVPLFQEQAMQIAIVGAGF 697

Query: 706 SLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
           +  +AD LRR++    K   + + K  F+ G  + G     A   F  +  F  YGF +S
Sbjct: 698 TPDQADRLRRSLATFKKHGNVSEFKNLFLRGMKRKGYDDDFAERCFSQIEGFGSYGFPES 757

Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
           HAA++A++ Y ++W+K H+P  F  A +  +        +  +DAR+  + + P  +N  
Sbjct: 758 HAASFALLVYASSWIKCHHPGIFACALLNSQPMGFYAPAQIVRDAREHGVDVRPICINAS 817

Query: 825 CVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
             D  +  +      +      IKG+    A  +  A  +  + S+ D   R   + +  
Sbjct: 818 FWDNVMEPDGRGGLALRLGFRQIKGISEEDATWLTAARGNG-YRSVRDVWRRAGLQPV-- 874

Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            ++E L  A        +R   L     +   A             +FA +    +    
Sbjct: 875 -MIERLAEADVFAALDLNRRAALWEAKALVPGA----------PLPLFAGDIDGEAIDEP 923

Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
                          +   +      HP+ + +  L
Sbjct: 924 AALLPEMTLGEEVVEDYVAMRLTLRAHPMALLRHRL 959


>gi|298528510|ref|ZP_07015914.1| DNA polymerase III, alpha subunit [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512162|gb|EFI36064.1| DNA polymerase III, alpha subunit [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 775

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 285/794 (35%), Positives = 429/794 (54%), Gaps = 24/794 (3%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
             F HL  H+ YSL EG + + ++  +    + PA++ITD+ NLF A++   KA   GI+
Sbjct: 2   SDFCHLHCHTEYSLFEGCIRIEDLCSRAVEYKMPAVSITDSGNLFGAMKLYLKAREYGIK 61

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PIIGC++++  +      +           +VLL     GY  L+ LVS  ++       
Sbjct: 62  PIIGCEVNLSPEKITDRDSFN-------YHLVLLAMDLHGYHNLVRLVSAGWMQ-GFYYK 113

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            R+    LQ   + GLI L+    G +           A +    +  +F DR Y+ L+ 
Sbjct: 114 PRVDKDMLQTY-SNGLIALSACMEGEVQYLLRTKGFDHALEAARQYASIFPDRFYLELEA 172

Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
               D+     ++++++    LP+VATN+  +L+ +D EA+  L  +  +          
Sbjct: 173 SGLKDQAEVNGRLMEMSEKTGLPMVATNDCRYLAPQDAEAYAALRCIQKN--ERLDHHNL 230

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            + + Y K+  EM   FS  P ALEN  +I  +C   L+       R + K     +   
Sbjct: 231 NSRELYFKSPEEMEKEFSHCPTALENVQKIIEQCGLDLEYPK----RHLPKYTPSAEDTL 286

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
           + EL   +  GLE +LA   +       +Y  RLD EL VI     S YFL+V D++ WA
Sbjct: 287 DKELVALSEKGLEEKLAN--LPYEVDRDEYFTRLDKELKVICEQGESWYFLVVHDYVSWA 344

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           K   I VGPGRG   GS+TAYAL IT +DP+R  L FE+F N  +  + D D+DFC +RR
Sbjct: 345 KSRGIVVGPGRGFAPGSMTAYALGITGVDPIRHRLYFEKFFN-TKTGLKDIDVDFCHERR 403

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
           +EV  Y++ KYG         F + +A+  LRDVG+ +     QV+++  LIP      V
Sbjct: 404 EEVFEYLREKYGQANAVYPSVFVASKARVVLRDVGQVMGFSLDQVEQITSLIPEKIGITV 463

Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
           S +A+  +   R     +  + R L+I ++L+ L RH S HAAGIVI +  L   +P+Y 
Sbjct: 464 S-KALEMEPALRNLMNDNEEMQRYLDICKRLDRLVRHVSIHAAGIVISNEKLQSYLPLYS 522

Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH 606
           D ++   V+Q++   + + G IKFDFLGLK L+L+ ++L  +   +    D+  +P DD 
Sbjct: 523 D-QNKAIVSQYDWDDLRRLGFIKFDFLGLKYLSLISRTLALIKVNKKQVPDMENLPLDDT 581

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNR 664
            T+ LL    T G+FQLESSGMR  L  + P C EDIIAL ++YRP  + N     +  R
Sbjct: 582 LTFDLLDGGLTEGVFQLESSGMRNTLMDLTPTCFEDIIALHAIYRPAFLQNGIDKDFIKR 641

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           K+G   +   HP ++P+L ET G+IIYQEQ+M+IAQ L+GYSL E D LRR +GKK    
Sbjct: 642 KHGLVSVEYPHPDLEPILNETHGLIIYQEQLMEIAQTLAGYSLEEGDTLRRVLGKKEATT 701

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M +Q+E+FI  A   G+ +  A ++FEL+ +FA Y F+KSH+ AY++I+YQTA++K HYP
Sbjct: 702 MAEQREKFIQKARDKGLDQLTAKHVFELMERFASYTFSKSHSVAYSMIAYQTAYLKAHYP 761

Query: 785 VEFLAASMTLEMDN 798
            EF  A   +  + 
Sbjct: 762 EEFQRALSMVFNNQ 775


>gi|229820774|ref|YP_002882300.1| DNA polymerase III, alpha subunit [Beutenbergia cavernae DSM 12333]
 gi|229566687|gb|ACQ80538.1| DNA polymerase III, alpha subunit [Beutenbergia cavernae DSM 12333]
          Length = 1194

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 282/1168 (24%), Positives = 469/1168 (40%), Gaps = 164/1168 (14%)

Query: 5    LEKS--PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            +  +    +  L  HS++S L+GA     ++ + A  +  A+AITD + L+  + F++ A
Sbjct: 1    MSTTDGARYAELHAHSAFSFLDGASQPEALVAEAARLELDAVAITDHDGLYGVVRFAEAA 60

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
             A G++ + G +L +D     + T     P P    +V+L     GY RL   ++  +L 
Sbjct: 61   RALGMRSVFGAELSLD-----QRTPATGVPDPDATHLVVLARGPAGYHRLSRAIATAHLA 115

Query: 123  DQGKQSVRI-------CLSWLQEIGTEGLIMLTGGSSGPIDR------------------ 157
               K             L  L E      ++LTG   G + R                  
Sbjct: 116  TGKKGERDYGHAVGLDPLEVLAEQAAGDWLVLTGCRKGAVRRALDGGADGADGAGGAGGA 175

Query: 158  ---AFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLV 212
               A   +  + A + L     LFG D + V L       D  R   +  LA    LP+V
Sbjct: 176  GSIAGAEHGERAAARELDRLVALFGRDNVAVELTDLGAPADSARCDTLADLAARAGLPVV 235

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE 272
            AT         +    DVL AV     + + D        +L++  EM++  +  P+A+ 
Sbjct: 236  ATGGVHCAHPREGRLVDVLAAVRARRSLEEIDGWLPPAPAHLRSADEMLARHARHPQAVR 295

Query: 273  NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
               E+   C+F L + AP LP        D    E + LR   +     R       +  
Sbjct: 296  TAAELGLECAFDLTLVAPRLPPHPVPPGYD----EASWLRELTMRCARTRYG----TRDE 347

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
                Y   +D EL++I R+ F GYFLIV + + +  +  I    GRGS A S   YAL I
Sbjct: 348  RPDAY-AIIDRELDIIVRLGFPGYFLIVHEIVDFCVQQGIL-CQGRGSAANSAVCYALGI 405

Query: 393  TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
            T +D ++  LLFERFL+  R   PD D+D    RR+EVI++V  +YG E  AQ+    S 
Sbjct: 406  TAVDAVQHKLLFERFLSDGRSGPPDIDVDIESGRREEVIQFVYTRYGREHAAQVANVISY 465

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPND-------PAHP------------------- 486
            + ++A+RD  RA      Q D   K I          P +P                   
Sbjct: 466  RPRSAVRDAARAFGYDVGQQDAWSKGIERWGTLRGPDPGNPDPAVKANATSTSSTSSSPS 525

Query: 487  ----------------VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
                             +            AR      + +L++++++  L RH   H+ 
Sbjct: 526  RATGTAAGPKIREKGVDTHDPAPPRHAPASAREMGEIPNHVLDVAEQMLRLPRHLGIHSG 585

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+V+  RP+ ++ P+         V Q++      AGL+KFD LGL  LT L+ + + + 
Sbjct: 586  GMVLCHRPVIEVCPVEWATMPGRTVLQWDKDDCADAGLVKFDLLGLGMLTALRLAFEQVE 645

Query: 591  QRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                +   L  +P +D + Y LL    T+G+FQ+ES      L  ++P    DI+  V+L
Sbjct: 646  ATSGERLALHSLPQEDPKVYELLCAADTVGVFQVESRAQISTLPRLKPRNFYDIVVEVAL 705

Query: 650  YRPGPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             RPGPI       +  R+NGKEK+  +HPL++  L +T G+ ++QEQ+MQIA  ++G+S 
Sbjct: 706  IRPGPIQGNSVHPFIRRRNGKEKVTYLHPLLEGALSKTLGIPLFQEQLMQIAIDVAGFSG 765

Query: 708  SEADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            SEAD LRRAM  K+  E+M+   ER ++G +  G+ + +   I++ L  F+D+GF +SHA
Sbjct: 766  SEADQLRRAMGSKRSLEKMEALHERLLAGMADRGVPRDVGEQIYDKLKAFSDFGFPESHA 825

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
             ++A + Y +AW+K H+P  F A  +  +            DAR+  + +   S+    V
Sbjct: 826  FSFAYLVYASAWLKIHHPEAFFAGLLGAQPMGFYSPASLVADARRHGVVVRRASIADSAV 885

Query: 827  DFKVGDNRIYYSLAAIKG-VG------TTTARHIMEASA--------------------- 858
               V          A  G VG       ++   +++A                       
Sbjct: 886  HALVEHGA------ADHGAVGLVPRATQSSETWLVDAGKADARGAAAVDPALPLDPAADA 939

Query: 859  ----DKPFDSLEDFCSR---VDSKKLNRRVLESLV----FAGALDCFGYSRM-------- 899
                  P  S   F  R      + +  +  E +V     A   D    +R         
Sbjct: 940  EDADGGP--SGRRFAVRLGLAPIRGIGEKTAERIVTERDRAPFADAQDLARRVRLTAAQL 997

Query: 900  QLLQSLDNI------QKYAQWVEKNRTNK--------HENIFAHEKGTFSDKITLEKFSV 945
            + L +   +      ++ A W       +           +     G  +  +       
Sbjct: 998  EALATAGALRCFGTSRREALWSAGALAGESGRVHLTSQGTVVQDVLGGTASGVAAPALPG 1057

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             ++      +    G     +P +  +P L   G++          G  + +  +V  +Q
Sbjct: 1058 MDAFEVASADVWATGLSPDRYPTEFVRPGLDAAGVRPVATLGGIENGARVEVGGVVTHRQ 1117

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  T  G  + +++  +          P
Sbjct: 1118 RPGTAGG--VTFLSLEDETGLLNVICSP 1143


>gi|298528545|ref|ZP_07015949.1| DNA polymerase III, alpha subunit [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512197|gb|EFI36099.1| DNA polymerase III, alpha subunit [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 782

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 270/791 (34%), Positives = 424/791 (53%), Gaps = 23/791 (2%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
             F HL  H+ YSL EG + +  +  K A  + PA++ITD+ NL+ A++    A   GI+
Sbjct: 2   SEFAHLHCHTEYSLFEGCIRIEELCSKAAEYKMPAVSITDSGNLYGAMKLYSAAREYGIK 61

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PIIGC++++                     +VLL     GY  L++LVS  +L       
Sbjct: 62  PIIGCEINLVPGKVTDRDKFN-------YHLVLLAMDLRGYHNLVKLVSAGWLQ-GFYYK 113

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
            R+    LQ+  ++G+I L+    G +             +  + + +++ DR Y+ L+ 
Sbjct: 114 PRVDKDMLQKY-SDGIIALSACLKGEVQYLLRAKGFDQGLEAAMQYARIYPDRFYLELEA 172

Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRP 246
               ++     ++++L+    LP+VA N+  +L+ +D EAH VL  + +   +  Q    
Sbjct: 173 SGYNEQAEVNDRLMELSEKTGLPIVAANDCRYLTPQDAEAHAVLKCIKNAERLDEQDLDN 232

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             T + Y K+  EM   FS  P ALEN  +I  +C+  L      LPR+       I+  
Sbjct: 233 LDTRELYFKSPEEMEKEFSYCPTALENVHKIVEQCNLDLDSPKRHLPRYK----PTIEDT 288

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            + EL   A+ GL+ +LA   +      + Y  RLD EL ++     S YFL+V D++ W
Sbjct: 289 LDKELTALALNGLDEKLA--TLPYKVDREKYFTRLDKELKILCEQGKSWYFLVVYDYVAW 346

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A+   I VGPGRGS  G +TAYAL IT IDP+   L FERF N  R  + D D+D CQ+R
Sbjct: 347 ARSRGIAVGPGRGSAPGCMTAYALGITGIDPILHKLHFERFCNTKRAGVVDIDVDLCQER 406

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R EV  YV  KYG   V  I  F  ++A+   RDV   + +   Q +R+ +LIP +P   
Sbjct: 407 RQEVFDYVFEKYGQNSVVYISVFICMRARTVFRDVSLVIGISPEQAERIIQLIPQEPGMT 466

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
           +S +A+  +   R     +  + R  +I  +LEGL RH ++HAA IVI +  L   +P+Y
Sbjct: 467 IS-KAMEMEPALRSIMNDNEKMQRCFDICTRLEGLIRHITSHAARIVISNENLQDYLPLY 525

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDD 605
           R  R+   + Q++   +E+ G   FD LGLK L+L+ ++LD +     +  D+  +P DD
Sbjct: 526 RG-RNHELIAQYDYNDLERLGFPGFDLLGLKYLSLISRTLDLIKASQKQAPDMDSLPLDD 584

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
            +T+ L+    T G FQLE  G RQ L  ++P+ +ED+ A+++LYRPGP+ + +   +  
Sbjct: 585 AKTFVLIEQGHTDGAFQLEGDGFRQYLRELKPERLEDLAAMLALYRPGPLVSGMLSNFIK 644

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
           R++G+      H  +  +LKET G+IIY EQVM IA  ++G+SL +A++L + +  K  E
Sbjct: 645 RRHGRVAAEYAHAELADILKETHGMIIYHEQVMTIAHKIAGFSLEDAEILAKNLVGKKPE 704

Query: 724 EMDKQKERFISGASKNGISK-TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + +QKE+FI GA +        A  IF+++ +   YG+ K+H+ AYA+ISYQTA++K +
Sbjct: 705 ALIQQKEKFIKGAMQKNNVPVKTAEQIFDMMKQAGPYGYLKAHSIAYAMISYQTAFLKAN 764

Query: 783 YPVEFLAASMT 793
           YP EF  A  T
Sbjct: 765 YPEEFQQAKDT 775


>gi|77464705|ref|YP_354209.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides 2.4.1]
 gi|77389123|gb|ABA80308.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides 2.4.1]
          Length = 940

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 239/982 (24%), Positives = 407/982 (41%), Gaps = 65/982 (6%)

Query: 4   YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +     FV L   S+++ L GA     ++ + A+   PA+AI D N++   +    +A 
Sbjct: 12  AMP----FVELSATSNFTFLTGASHPEELMRRAASLGLPALAIADENSVAGIVRAYGEAK 67

Query: 64  AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
                     ++  +     ++    +       S+ +L      + RL  L++      
Sbjct: 68  ----------EIARETGSAPRLIPAARIVVREGMSVTVLPRDRAAWGRLCRLLTLGR-RA 116

Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             K S  +  + L     EG  ML    +          SS   +            R+ 
Sbjct: 117 APKGSCDLGFADLLA-HAEGQEMLLHPPA---------RSSGGWQTLAARLAAACPGRVA 166

Query: 184 VNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           + L  H  G DR R  +   LA    +P VA+   +          DVL A+     V +
Sbjct: 167 LILAPHYAGQDRVRFERQALLAARLGIPTVASGLPILHHGARRRLADVLTAIRLGCRVDE 226

Query: 243 -KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              R  V  +  L++ +EM+ ++    EA+  + EIA R  F L        R+      
Sbjct: 227 LGRRALVNGEQRLRSEAEMLRLYPGHEEAVFRSAEIAGRLDFCLSE-----LRYEYPSEI 281

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              +   + L      GL  R   G        +    +   EL +I ++ +  YFL V 
Sbjct: 282 SKGESPADRLARLTREGLVWRFPAGV------PEKIAAQARHELELIGKLGYEPYFLTVN 335

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           D +++A+   I    GRGS A S+  YAL +T +DP   +++FERF++  R   PD D+D
Sbjct: 336 DIVRFARDRGIL-CQGRGSAANSIVCYALGVTSVDPEVGTMVFERFVSEARNEPPDIDVD 394

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           F  +RR+EVI+++ ++YG +R     T    + K A+R+VGRA+ +    +  +   I  
Sbjct: 395 FEHERREEVIQHIYSRYGRDRAGLCATVIHYRGKRAVREVGRAMGLSEDTLTAMASQIWG 454

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                   +    +              +L++  Q      RH S H  G VI +  L +
Sbjct: 455 WGGPGALTERRLREIGLDPNDRRLWLALQLIDEIQGF---PRHLSQHVGGFVITEGRLDE 511

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSL 600
           LVP+         V  ++   I+  G++K D L L  LT ++K+ D +         L+ 
Sbjct: 512 LVPIENAAMEGRTVICWDKDDIDMLGILKVDVLALGMLTCIRKAFDLIESHHHTSYTLAT 571

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
           +P DD +TY +L    +LG+FQ+ES      L  M+P C  D++  V++ RPGPI   +V
Sbjct: 572 LPRDDSQTYDMLCRADSLGVFQVESRAQMNFLPRMRPRCFYDLVVQVAIIRPGPIQGDMV 631

Query: 661 YN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
           +    R+NG+E        +  +L +T GV ++QEQ MQIA + + +S  EAD LRRA+ 
Sbjct: 632 HPYIRRRNGQEDPHLPSDALGKVLGKTLGVPLFQEQAMQIAIIGANFSPEEADRLRRALA 691

Query: 719 KKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K   + + KERF++G   NG  K  A   F  +  F  YGF +SHAA++A++ Y +A
Sbjct: 692 TFKKHGNVTELKERFMNGMLANGYDKDFATRCFSQIEGFGSYGFPESHAASFALLVYASA 751

Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN---- 833
           W+K H+P  F  A +  +        +  +DAR   + ++PP +N    D  +  +    
Sbjct: 752 WIKCHHPGIFACALLNAQPMGFYAPAQIVRDARAHGVIVLPPCINASLWDNVMERDREGR 811

Query: 834 -RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             +      IKGV    A+ I+ A  +  + ++ED   R     +    +  L  A    
Sbjct: 812 LALRLGFRQIKGVAEEEAQWIVAARGNG-YRAVEDIWRRA---GVPPATVTRLAEADCFA 867

Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
             G +R +       +            ++   +FA +                      
Sbjct: 868 ALGLTRREAQWQARAL----------SGDRPLPLFAGDMDGEGIVEPEVVLREMTLGEEV 917

Query: 953 ENEQRVLGFYFSGHPLDVYKPI 974
             +          HP+ + + +
Sbjct: 918 VEDYVSFRLSLRSHPMALLREL 939


>gi|126463545|ref|YP_001044659.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105209|gb|ABN77887.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides ATCC
           17029]
          Length = 940

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 239/982 (24%), Positives = 407/982 (41%), Gaps = 65/982 (6%)

Query: 4   YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +     FV L   S+++ L GA     ++ + A+   PA+AI D N++   +    +A 
Sbjct: 12  AMP----FVELSATSNFTFLTGASHPEELMRRAASLGLPALAIADENSVAGIVRAYGEAK 67

Query: 64  AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
                     ++  +     ++    +       S+ +L      + RL  L++      
Sbjct: 68  ----------EIARETGSAPRLIPAARIVVREGMSVTVLPRDRAAWGRLCRLLTLGR-RA 116

Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             K S  +  + L     EG  ML    +          SS   +            R+ 
Sbjct: 117 APKGSCDLGFADLLA-HAEGQEMLLHPPA---------RSSGGWQTLAARLAAACPGRVA 166

Query: 184 VNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           + L  H  G DR R  +   LA    +P VA+   +          DVL A+     V +
Sbjct: 167 LILAPHYAGQDRVRFERQALLAARLGIPTVASGLPILHHGARRRLADVLTAIRLGCRVDE 226

Query: 243 -KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
              R  V  +  L++ +EM+ ++    EA+  + EIA R  F L        R+      
Sbjct: 227 LGRRALVNGEQRLRSEAEMLRLYPGHEEAVFRSAEIAGRLDFCLSE-----LRYEYPSEI 281

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              +   + L      GL  R   G        +    +   EL +I ++ +  YFL V 
Sbjct: 282 SRGESPADRLARLTREGLVWRFPAGV------PEKIAAQARHELELIGKLGYEPYFLTVN 335

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           D +++A+   I    GRGS A S+  YAL +T +DP   +++FERF++  R   PD D+D
Sbjct: 336 DIVRFARDRGIL-CQGRGSAANSIVCYALGVTSVDPEVGTMVFERFVSEARNEPPDIDVD 394

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           F  +RR+EVI+++ ++YG +R     T    + K A+R+VGRA+ +    +  +   I  
Sbjct: 395 FEHERREEVIQHIYSRYGRDRAGLCATVIHYRGKRAVREVGRAMGLSEDTLTAMASQIWG 454

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                   +    +              +L++  Q      RH S H  G VI +  L +
Sbjct: 455 WGGPGALTERRLREIGLDPNDRRLWLALQLIDEIQGF---PRHLSQHVGGFVITEGRLDE 511

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSL 600
           LVP+         V  ++   I+  G++K D L L  LT ++K+ D +         L+ 
Sbjct: 512 LVPIENAAMEGRTVICWDKDDIDMLGILKVDVLALGMLTCIRKAFDLIESHHHTSYTLAT 571

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
           +P DD +TY +L    +LG+FQ+ES      L  M+P C  D++  V++ RPGPI   +V
Sbjct: 572 LPRDDSQTYDMLCRADSLGVFQVESRAQMNFLPRMRPRCFYDLVVQVAIIRPGPIQGDMV 631

Query: 661 YN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
           +    R+NG+E        +  +L +T GV ++QEQ MQIA + + +S  EAD LRRA+ 
Sbjct: 632 HPYIRRRNGREDPHLPSDALGKVLGKTLGVPLFQEQAMQIAIIGANFSPEEADRLRRALA 691

Query: 719 KKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K   + + KERF++G   NG  K  A   F  +  F  YGF +SHAA++A++ Y +A
Sbjct: 692 TFKKHGNVTELKERFMNGMLANGYDKDFATRCFSQIEGFGSYGFPESHAASFALLVYASA 751

Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN---- 833
           W+K H+P  F  A +  +        +  +DAR   + ++PP +N    D  +  +    
Sbjct: 752 WIKCHHPGIFACALLNAQPMGFYAPAQIVRDARAHGVIVLPPCINASLWDNVMERDREGR 811

Query: 834 -RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             +      IKGV    A+ I+ A  +  + ++ED   R     +    +  L  A    
Sbjct: 812 LALRLGFRQIKGVAEEEAQWIVAARGNG-YRAVEDIWRRA---GVPPATVTRLAEADCFA 867

Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
             G +R +       +            ++   +FA +                      
Sbjct: 868 ALGLTRREAQWQARAL----------SGDRPLPLFAGDMDGEGIVEPEVVLREMTLGEEV 917

Query: 953 ENEQRVLGFYFSGHPLDVYKPI 974
             +          HP+ + + +
Sbjct: 918 VEDYVSFRLSLRSHPMALLREL 939


>gi|75676440|ref|YP_318861.1| error-prone DNA polymerase [Nitrobacter winogradskyi Nb-255]
 gi|74421310|gb|ABA05509.1| error-prone DNA polymerase, DnaE-like protein [Nitrobacter
            winogradskyi Nb-255]
          Length = 1175

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 257/1116 (23%), Positives = 433/1116 (38%), Gaps = 134/1116 (12%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             +P +  + + +++S L GA      + + +  + P I I D N L   +    +     
Sbjct: 6    DTPCYAEIGIATNFSFLHGASHPQEYVHQASELRLPVIGIADRNTLAGVVRAYTELKNPE 65

Query: 67   I----QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
            +    + +IG +L                     P I++       Y RL +L++R    
Sbjct: 66   VRYKPRLLIGSRLVFIDG---------------TPDILIYPRDRNAYGRLCQLLTRGK-R 109

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
               K    + L  L +     L++L         R         A + L   ++   D +
Sbjct: 110  AATKGECHLKLDDLLDFSEGQLLVLALPHRLETAR---------AMEVLDRLRQASADGV 160

Query: 183  YVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VV 240
            ++     +RG DR R  ++ ++A T  +PL+ATN  L+         DVL  V   T V 
Sbjct: 161  WLAASLLYRGDDRRRLLRLQRIAATAHVPLLATNEVLYHHPARRPLQDVLTCVREKTAVD 220

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            +   R  +  + +LK+  EM  +F DLPEA+  T+  A R  F L       P       
Sbjct: 221  AIGRRLELNAERHLKSACEMEKLFRDLPEAIAETMRFASRIEFTLDQLQYQYPDEPVP-- 278

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              + K  +  L +   AG                   R+ L  EL +I R+K++ YFL V
Sbjct: 279  --LGKSAQRHLEDLTWAGAHKYFP------VRIPPRTRKVLHKELRLIRRLKYAHYFLTV 330

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D ++WA+  +I    GRGS A S   Y L +T +DP +  LLFERF++ +R+  PD D+
Sbjct: 331  HDIVRWARDQDIL-CQGRGSAANSAVCYVLGVTSVDPTKVDLLFERFISRERLEPPDIDV 389

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF   RR+EV++YV  +YG  R A I T    + ++A+RDVG+AL +       L   + 
Sbjct: 390  DFEHSRREEVMQYVYRRYGRHRAAIIATVIHYRPRSAIRDVGKALGLTEDVTAALADTVW 449

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                  VS   I    R       +P V R + ++ +L G  RH S H  G V+    L 
Sbjct: 450  GSWGDEVSDAQI----RQAGFDPRNPMVRRAVALATELIGFPRHLSQHVGGYVLTQDRLD 505

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD--L 598
              VP+      +    +++   ++   ++K D L L  LT ++K  D +A+   +     
Sbjct: 506  TYVPIGNAAMENRTFIEWDKDDVDALRMMKVDVLALGMLTCIRKCFDLMAEHKGERRELA 565

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             +   DD E Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   
Sbjct: 566  DIRSRDDDEVYQMLQRGESLGVFQVESRAQMNMLPRLRPRTFYDLVIEVAIVRPGPIQGD 625

Query: 659  VVYN---NRKNGKEKIVSIHP------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            +V+     R    EKI   +P       +  +L +T GV ++QEQ M+IA   + ++  E
Sbjct: 626  MVHPYLKRRAMDPEKIDYPYPKNGDRNELRNVLHKTLGVPLFQEQAMRIAIEAAKFTSEE 685

Query: 710  ADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            A+ LRRAM        + K + + +      G     A N FE +  F  YGF +SHAA+
Sbjct: 686  ANGLRRAMATFRHVGTIGKFEAKMVGNMIARGYDPVFARNCFEQIKGFGSYGFPESHAAS 745

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            +A + Y +AW+K  +P  F    +  +        +   DAR+  +++ P  V+      
Sbjct: 746  FAQLVYVSAWLKCFHPDAFCCGLLNSQPMGFYAPAQIVGDARKNGVEVRPVDVSFSHSQN 805

Query: 829  KVGDN-----RIYYSLAAIKGV----------GTTTARHIM-------EASADKPFDSLE 866
             + +       +      I G               A   +                 L+
Sbjct: 806  TLEERTGRYCAVRLGFRQIDGFKWVDKDEERGRQQAADKELFPPPLWGRVREGGE---LQ 862

Query: 867  DFCSRVDSKKL-------------------NRRVL-----------ESLVFA-------- 888
            D C R     L                   +R  L           E +V A        
Sbjct: 863  DQCLRCSPLHLSSTGGERAGSAWIGTSNPSSREQLFSSSLTSDDWGERIVAARQHRPFAS 922

Query: 889  --GALDCFGYSRMQLLQ--------SLDNIQKYAQWVEKNRTNK-HENIFAHEKGTFSDK 937
                       +  L+         SL   ++ A W  +   +     +F          
Sbjct: 923  IEDFARATKLPKRALILLADADAFRSLGLDRRAALWAVRRLPDDVPLPLFESAIARELPD 982

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
                       S +   + + +     GHP++  +  L   G+    E         +R 
Sbjct: 983  EHAAPLPPMPLSEQVVADYQTVRLSLKGHPMEFLRGTLSNEGVASCAEVCHANDRRRVRC 1042

Query: 998  AAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            A +V+ +Q+  +  G  + ++T  +         +P
Sbjct: 1043 AGVVLVRQRPGSANG--VVFMTLEDETGIANIVVWP 1076


>gi|116748373|ref|YP_845060.1| DNA polymerase III subunit alpha [Syntrophobacter fumaroxidans MPOB]
 gi|116697437|gb|ABK16625.1| DNA polymerase III, alpha subunit [Syntrophobacter fumaroxidans MPOB]
          Length = 1003

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 281/1034 (27%), Positives = 480/1034 (46%), Gaps = 89/1034 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL VHS YS++ G  S+  +    +A     +A+TD    +  + F   A   GI P
Sbjct: 4    TFVHLHVHSHYSMMRGVSSVTALCRTASALGFEHLALTDDKGFYGLINFLDAARRFGIHP 63

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+G  +                        V+L  T  GY+ L EL +R +L        
Sbjct: 64   IVGTTIGTGPDTA-----------------VVLAKTPRGYELLSELTTRRHLDA------ 100

Query: 130  RICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
                S L++   G   L++LT      I +A                         V + 
Sbjct: 101  --DFSLLRDFPDGRRDLVVLTANP--EIIKALHPRRECG-----------------VEVV 139

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
               G       +++++A++  +P VATN   F   EDY  H ++ A+  +  +S   R  
Sbjct: 140  PGPGD-----RRLLKMAHSLGVPPVATNAVHFAHLEDYSLHRLVRAIDLNLTLSNIPREE 194

Query: 248  V-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            +  PD +L++ ++M       PEAL NT+++A  C            R I     D +++
Sbjct: 195  IVRPDQWLQSAAQMERRLPHCPEALANTLKLAGECH-----TKWDHFRTIFPHYRDRRED 249

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
                L  K   G+           G  +    +RL  EL++I    +  YFL+VAD +  
Sbjct: 250  HFALLLEKCRKGISW-------RYGRTSPAVEERLAEELDLIGAKGYVDYFLVVADIV-- 300

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
                  P+  GRGSGA S+ +Y L IT +DPLR +LLF RFLNP+R  +PD D+DF  D 
Sbjct: 301  ---GRRPIHCGRGSGAASLVSYLLGITHVDPLRHNLLFGRFLNPERKDLPDIDVDFPWDE 357

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD++   ++  YG ER+A +       A+AA+R+V R   +P +++  + + +       
Sbjct: 358  RDDLFEELRRHYGAERMATVANHVGFGARAAVREVARVYGVPAAEIKEVTRRMSFWTEPG 417

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
               + I    +FR     DP    +++++ +LE L RH S H  G++I    +S+ VP+ 
Sbjct: 418  AMWERIGTHPKFRGF-PLDPPWPEIIDLAGRLESLPRHLSMHCGGVIIAPDRISRHVPVQ 476

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--DLSLIPFD 604
            R       + Q+     EKAGL+K D LG ++L +++ SL  + +   K      L P D
Sbjct: 477  R-SAKGARIIQWEKDQAEKAGLVKIDLLGNRSLAVIRDSLAAIRENYGKDLEYARLNPVD 535

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D +T   + T  T+G+F +ES  MR   +       E ++   S+ RP     I  Y +R
Sbjct: 536  DPDTREQIRTGRTMGVFYVESPAMRLLQQKAGCGDFEHLVIHSSIIRPAANRYIRDYLDR 595

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             +G      +HP +  +L E  G+++YQE V+Q A +L+G+S  EAD LR+ + KK +E+
Sbjct: 596  LHG-APYEPLHPSLAGLLAENYGILVYQEDVVQAAMILAGFSWGEADGLRKVISKKSREQ 654

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            +   + RF  G +  G+S  +   ++E+   F+ Y F K H+A+YA++S+++A++K HYP
Sbjct: 655  LSDYRSRFARGCAARGVSPDVVDRVWEMFISFSGYSFCKPHSASYALVSFKSAYLKAHYP 714

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EF+AA ++           +  ++R+  + +  P +N    +++ GD  +   L  ++ 
Sbjct: 715  AEFMAAVLS-NGGGYYSTFAYVSESRRMGLTVAGPDINESAWNYRGGDRCVRMGLRQLQN 773

Query: 845  VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF--GYSRMQL 901
            +  +T   I+     + PF S+E+   RVD   +       L  +GALD    G +R +L
Sbjct: 774  IRRSTLEDILAERGKNGPFASVEELLRRVD---IPPSDGMILARSGALDSLSGGLNRPRL 830

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L  ++     A  V+    +   + F         +I +      +    + +E   LGF
Sbjct: 831  LWFIEAWFNGA-GVKGTAGHGQISAF----PRPRARIVVPPLPGFSPRQTWRHEMETLGF 885

Query: 962  YFSGHPLDVYKPILRKM--GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
              S HPL + +P+ RK+   +    +    + G  +  A   +++++  TR+G  + +V+
Sbjct: 886  VLSVHPLAMVEPMARKLPHRVTKAADLHRHV-GERVCTAGWPITRKEVLTREGEPMEFVS 944

Query: 1020 FSEPAKEYEANFFP 1033
            F +    YE  FFP
Sbjct: 945  FEDRTAIYETVFFP 958


>gi|269962022|ref|ZP_06176376.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833106|gb|EEZ87211.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1024

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 244/1037 (23%), Positives = 426/1037 (41%), Gaps = 83/1037 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA--CAAGI 67
            S+  L   S++S L GA     ++ + A  +  AIAITD  ++   ++           I
Sbjct: 2    SYAELFCQSNFSFLTGASHAEELVLQAAFYRYQAIAITDECSVAGVVKAHATIEQHKLDI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+G    ++ +                  +VLL    + Y  L  +++      + K 
Sbjct: 62   KQIVGSMFWLNDE----------------CQVVLLCPCRKAYAELCRIITNSRRRRE-KG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            + ++    L  I               +  +   +            ++    RL+V +Q
Sbjct: 105  TYQLSEWDLMSIRH--------CLVLWLPTSQESDHY-----WGRWLQQHHAHRLWVAIQ 151

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH  G D    +    LA   +LP+ A    L  + E      VL AV H   V +    
Sbjct: 152  RHLGGDDDAYTTHCELLANEFQLPITACGGVLMHAVERLPLQHVLTAVKHGCSVDKLGFG 211

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R++           ++  S +  A                +         E   D     
Sbjct: 212  RLSNAERALRP---LNKLSRIYRAEWLAESTHIASLCEFNLSDLKYEYPTELIPDG--HT 266

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR     G ++R  +G  A      D  Q ++ EL +I  +++  YFL + D + +
Sbjct: 267  PTSYLRLLVERGKKLRFPEGVPA------DIHQTIENELTLIEELEYHYYFLTIHDIVMF 320

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+  I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +R
Sbjct: 321  AKQQGILY-QGRGSAANSVVCYCLEITAVDPRQISVLFERFISRERKEPPDIDVDFEHER 379

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG ER A   T  S + K+A+R+VG+AL +  +Q+D   K +       
Sbjct: 380  REEVIQYIYKKYGRERAALAATVISYRFKSAVREVGKALGIEETQLDFFIKNVNRRDRSQ 439

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                 I +       +       + +++  ++ G  RH S H  G VI   PL +LVP+ 
Sbjct: 440  GWQAQIIE----LGLQPESLKGQQFIQLVNEIIGFPRHLSQHVGGFVISSGPLYELVPVE 495

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---VDLSLIPF 603
                 D  + Q++   +E   L+K D L L  L  ++K    + +   +   +       
Sbjct: 496  NASMEDRTIIQWDKDDLESLKLLKVDVLALGMLNAIRKCFQLVEKHHQRSLSIAEITRLQ 555

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662
            DD   Y ++    T+G+FQ+ES      L  ++P    D++  +++ RPGPI   +V+  
Sbjct: 556  DDPHVYRMIQKADTVGVFQIESRAQMSMLPRLKPARYYDLVVQIAIVRPGPIQGDMVHPF 615

Query: 663  -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R+NG+E I      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM    
Sbjct: 616  LKRRNGEEPISYPSEEVKSVLERTMGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMAAWK 675

Query: 722  KEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            K     K K + I G  + G     A  IF+ +  F +YGF +SH+A++AV++Y +AW+K
Sbjct: 676  KNGDLAKFKPKLIDGMRERGYDLEFAERIFDQICGFGEYGFPESHSASFAVLAYCSAWLK 735

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RI 835
             +YP EF  A +  +        +  QDAR+  ++++P  +N       +         +
Sbjct: 736  FYYPAEFYTALLNSQPMGFYSPSQLIQDARRHGVEVLPVCINHSSYQHHLVKRPNGRLGV 795

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                  +KG    +A  ++E      + S+++    V     NRR +E L  A A     
Sbjct: 796  QLGFRLVKGFNQESASRLVERRPTTGYRSIQE----VKQILRNRRDIELLASANAFQILS 851

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R     +  +                  +F H +   ++          +       +
Sbjct: 852  GNRYNARWAAMDSLSD------------LPLFNHMEEPMANYQAQP-----SEYENLIED 894

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G   S HP+ + +   +       ++ V     + + +  +V  +Q   T  G  +
Sbjct: 895  YASTGLSLSRHPITLLEEAGKLPRFTRMKQLVEKEHKSLVTVVGVVTGRQSPGTAAG--V 952

Query: 1016 GWVTFSEPAKEYEANFF 1032
             + T  +         +
Sbjct: 953  TFFTLEDDTGNINVVVW 969


>gi|221640619|ref|YP_002526881.1| DNA polymerase III subunit alpha [Rhodobacter sphaeroides KD131]
 gi|221161400|gb|ACM02380.1| DNA polymerase III, alpha subunit [Rhodobacter sphaeroides KD131]
          Length = 928

 Score =  476 bits (1224), Expect = e-131,   Method: Composition-based stats.
 Identities = 239/975 (24%), Positives = 406/975 (41%), Gaps = 61/975 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV L   S+++ L GA     ++ + A+   PA+AI D N++   +    +A        
Sbjct: 3   FVELSATSNFTFLTGASHPEELMRRAASLGLPALAIADENSVAGIVRAYGEAK------- 55

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
              ++  +     ++    +       S+ +L      + RL  L++        K S  
Sbjct: 56  ---EIARETGSAPRLIPAARIVVREGMSVTVLPRDRAAWGRLCRLLTLGR-RAAPKGSCD 111

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
           +  + L     EG  ML    +          SS   +            R+ + L  H 
Sbjct: 112 LGFADLLA-HVEGQEMLLHPPA---------RSSGGWQTLAARLAAACPGRVALILAPHY 161

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRV 248
            G DR R  +   LA    +P VA+   +          DVL A+     V +   R  V
Sbjct: 162 AGQDRVRFERQALLAARLGIPTVASGLPILHHGARRRLADVLTAIRLGCRVDELGRRALV 221

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             +  L++ +EM+ ++    EA+  + EIA R  F L        R+         +   
Sbjct: 222 NGEQRLRSEAEMLRLYPGHEEAVFRSAEIAGRLDFCLSE-----LRYEYPSEISRGESPA 276

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
           + L      GL  R   G        +    +   EL +I ++ +  YFL V D +++A+
Sbjct: 277 DRLARLTREGLVWRFPAGV------PEKIAAQARHELELIGKLGYEPYFLTVNDIVRFAR 330

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              I    GRGS A S+  YAL +T +DP   +++FERF++  R   PD D+DF  +RR+
Sbjct: 331 DRGIL-CQGRGSAANSIVCYALGVTSVDPEVGTMVFERFVSEARNEPPDIDVDFEHERRE 389

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
           EVI+++ ++YG +R     T    + K A+R+VGRA+ +    +  +   I         
Sbjct: 390 EVIQHIYSRYGRDRAGLCATVIHYRGKRAVREVGRAMGLSEDTLTAMASQIWGWGGPGAL 449

Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            +    +              +L++  Q      RH S H  G VI +  L +LVP+   
Sbjct: 450 TERRLREIGLDPNDRRLWLALQLIDEIQGF---PRHLSQHVGGFVITEGRLDELVPIENA 506

Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607
                 V  ++   I+  G++K D L L  LT ++K+ D +         L+ +P DD +
Sbjct: 507 AMEGRTVICWDKDDIDMLGILKVDVLALGMLTCIRKAFDLIESHHHTSYTLATLPRDDSQ 566

Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665
           TY +L    +LG+FQ+ES      L  M+P C  D++  V++ RPGPI   +V+    R+
Sbjct: 567 TYDMLCRADSLGVFQVESRAQMNFLPRMRPRCFYDLVVQVAIIRPGPIQGDMVHPYIRRR 626

Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-E 724
           NG+E        +  +L +T GV ++QEQ MQIA + + +S  EAD LRRA+    K   
Sbjct: 627 NGREDPHLPSDALGKVLGKTLGVPLFQEQAMQIAIIGANFSPEEADRLRRALATFKKHGN 686

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           + + KERF++G   NG  K  A   F  +  F  YGF +SHAA++A++ Y +AW+K H+P
Sbjct: 687 VTELKERFMNGMLANGYDKDFATRCFSQIEGFGSYGFPESHAASFALLVYASAWIKCHHP 746

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYYSL 839
             F  A +  +        +  +DAR   + ++PP +N    D  +  +      +    
Sbjct: 747 GIFACALLNAQPMGFYAPAQIVRDARAHGVIVLPPCINASLWDNVMERDREGRLALRLGF 806

Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IKGV    A+ I+ A  +  + ++ED   R     +    +  L  A      G +R 
Sbjct: 807 RQIKGVAEEEAQWIVAARGNG-YRAVEDIWRRA---GVPPATVTRLAEADCFAALGLTRR 862

Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
           +       +            ++   +FA +                        +    
Sbjct: 863 EAQWQARAL----------SGDRPLPLFAGDMDGEGIVEPEVVLREMTLGEEVVEDYVSF 912

Query: 960 GFYFSGHPLDVYKPI 974
                 HP+ + + +
Sbjct: 913 RLSLRSHPMALLREL 927


>gi|324993220|gb|EGC25140.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK405]
          Length = 1069

 Score =  476 bits (1224), Expect = e-131,   Method: Composition-based stats.
 Identities = 291/1023 (28%), Positives = 484/1023 (47%), Gaps = 98/1023 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 36   IQLDTKTVYSFMDSLIPIKKYVQKAKELGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 95

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +L +  ++                 + LL   ++GY+ L++ VS + ++ Q       
Sbjct: 96   GLELSLIKEEREL-------------HLRLLALDSQGYRNLMK-VSTLKMMGQKN----- 136

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                 Q +  +GL ++     G  D                      G   YV +     
Sbjct: 137  -WEDFQHLF-KGLAVIVPAFDGVADLDL-------------------GLDFYVGVFPATP 175

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                              P +  +   +    D E   +L A+  +  +  ++   +   
Sbjct: 176  K------------QEFGWPTLPLHTVRYFDTGDLETLQMLRAIRENASL--REIGSLPNH 221

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +L     +   F +        +E   R           LPR       + ++    EL
Sbjct: 222  EFLLAPDALAGAFKETFPESLANLEKLVRHVHYDINRELKLPR------FNRERPAVEEL 275

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R ++ AGL+         +G   + Y++RLD EL+VI +M F  YFLIV D +++ +   
Sbjct: 276  RERSEAGLKK--------RGLTGKLYQERLDQELDVIHQMGFDDYFLIVWDLLRFGRSQG 327

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E I
Sbjct: 328  YYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPEFI 387

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +      A
Sbjct: 388  RYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLTT---A 444

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+      
Sbjct: 445  YEKNMAFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPLKYG--E 502

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D ET  
Sbjct: 503  DMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIAEIDLEDAETLK 562

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E  G    L  +QP C E+++A  SL RPG  D I  +  RK+G E+
Sbjct: 563  LFAAGQTKGIFQFEQPGAISLLNRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGLEQ 622

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + +E
Sbjct: 623  VELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAAEMHRMQE 682

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F   
Sbjct: 683  DFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAFFKAHYPDVFFDV 742

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA  F+ +  P S+N      K  D +I+  L  IKG+    A
Sbjct: 743  MLN------YSSSDYITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLPRDLA 796

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L N+  
Sbjct: 797  YWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLPNLFV 856

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            +A  +         ++FA    ++++          + + +FE EQ ++G   S HPL  
Sbjct: 857  FADEL--------GSLFADTTYSWTEA------QDFSDAEKFELEQSIIGVGLSDHPL-- 900

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                L K   + +         +  ++ A V + +  +T+KG  + ++  S+  K+ +  
Sbjct: 901  --VKLAKEADQPFSWISELTENSRAKILAQVQTIKTIRTKKGENMAFLQVSDTKKKLDVT 958

Query: 1031 FFP 1033
             FP
Sbjct: 959  LFP 961


>gi|255021587|ref|ZP_05293630.1| DNA polymerase III alpha subunit [Acidithiobacillus caldus ATCC
            51756]
 gi|254968975|gb|EET26494.1| DNA polymerase III alpha subunit [Acidithiobacillus caldus ATCC
            51756]
          Length = 993

 Score =  476 bits (1224), Expect = e-131,   Method: Composition-based stats.
 Identities = 260/1012 (25%), Positives = 429/1012 (42%), Gaps = 82/1012 (8%)

Query: 30   NNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQG 89
              ++++ A      +AIT+  +L SA      A  AG++ I+G +  +            
Sbjct: 2    EALVERAAQLGYAGLAITEECSLISAPRAHVAAREAGLKLILGSRFRLVDGQE------- 54

Query: 90   KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLT- 148
                     +VLLV  A GY  L +L+        GK   R+  + L      GL+ +  
Sbjct: 55   ---------LVLLVQDARGYAALAQLIGLARGR-AGKGDYRLEWADL--FPCPGLLAILL 102

Query: 149  --GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ-RHRGYDRYRESQVVQLA 204
               G +G                 L    + +G +RL + L  R+RG    R + + +  
Sbjct: 103  PDWGRAGEPP------------AILAELSRHWGRERLRLGLVLRYRGDHSQRLAGLRRWM 150

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
                +  +A          +    DVL A+     +  +    +  +     RS      
Sbjct: 151  EGTGIRGLACGAVTMARRRERFLLDVLTAIRLGRPL-SELGWALAANGEAHLRSRAQLDT 209

Query: 265  SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
                  L  T+ +A  C+F L       P         +++  E  LR  A AGL +R  
Sbjct: 210  LYPQNLLAETLAVAASCTFSLDSLRYRYPPGTCP----LERSPEEHLRFLAKAGLGLRYP 265

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
             G            ++L+ EL ++  + +  YFL V + +Q+AK   I    GRGS A S
Sbjct: 266  DG------IPGKVARQLEEELRIVHELGYGPYFLTVHEIVQFAKSRGIL-CQGRGSAANS 318

Query: 385  VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
            V  YAL IT++DP R +LLF RFL+ +R   PD D+DF  +RR+EVI++V  +YG    A
Sbjct: 319  VLCYALGITEVDPTRGNLLFSRFLSRERGEPPDIDVDFEHERREEVIQFVFARYGRRHAA 378

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
               +    + ++ALRD  RAL    ++ D L + +       +  + + +          
Sbjct: 379  LTASVRHYRPRSALRDAARALGFSTAEQDALGRGLAWWDGRRLRPERLRE----AGFDPE 434

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
             P+V RLL ++  L GL RH S H  G+V+   PL  LVP+     +   V Q++   ++
Sbjct: 435  SPAVQRLLVVANALVGLPRHLSQHVGGMVLSAEPLDALVPIEPARMAGRTVIQWDKNDLD 494

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
              G++K D L L  L++L+++L       +   L+ IP +D   Y +L    +LG+FQ+E
Sbjct: 495  LLGILKVDLLALGMLSVLRRAL-----DDLGCTLADIPPEDPAVYAMLQRGESLGVFQVE 549

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPML 682
            S      L  ++P C  D++  V++ RPGPI   +V+    R+ G E +    P +  +L
Sbjct: 550  SRAQMSMLPRLKPRCFYDLVIEVAIIRPGPIQGGMVHPYLRRREGLEPVHYPGPEVRKVL 609

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM-DKQKERFISGASKNGI 741
            + T GV I+QEQVMQIA   +G+    AD LRRAM    +       +ER   G    G 
Sbjct: 610  ERTLGVPIFQEQVMQIAMEAAGFDGDAADGLRRAMAAWRRHGNLGPYQERLREGLRARGY 669

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
              T A  + + +  FA+YGF +SHAA++A++ Y +AW+K H+P  F AA +  +      
Sbjct: 670  DDTFAQQLCQQIQGFAEYGFPESHAASFALLVYASAWLKCHHPAVFSAALLNSQPMGFYA 729

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
              +  ++AR+  + ++P S+     D +     +      ++G+    A+ I+       
Sbjct: 730  PAQIVREARERGVTVLPLSIRHSVWDSRAHGRTLRLGFHQLRGLPREVAQRIVAWREQG- 788

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
                 D  + V      R  +E L  AGA +  G  R Q L  +  ++            
Sbjct: 789  --GALDPVALVQELGCPRAEVERLARAGAWEEEGLDRRQSLWQVAAVRAATPLPLAPAAE 846

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
                + A    T                 R   +   LG     HPL   +P L+  G +
Sbjct: 847  PKMALAATPAAT-----------------RCRIDYAQLGLSLGPHPLHFLRPHLQAEGCR 889

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               E      G   R+A +V  +Q+  T  G+   ++T  + +       +P
Sbjct: 890  PIAELGRAFAGGARRIAGLVTHRQRPATAHGT--VFLTLEDESDRINVIVWP 939


>gi|187923381|ref|YP_001895023.1| DNA polymerase III subunit alpha [Burkholderia phytofirmans PsJN]
 gi|187714575|gb|ACD15799.1| DNA polymerase III, alpha subunit [Burkholderia phytofirmans PsJN]
          Length = 1193

 Score =  476 bits (1224), Expect = e-131,   Method: Composition-based stats.
 Identities = 251/1143 (21%), Positives = 440/1143 (38%), Gaps = 166/1143 (14%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            P++  L   +++S L GA   + ++++  +    A+AITD  +L   +          I+
Sbjct: 19   PAYAELHCLTNFSFLRGASHPHELVEQAMSRGYSALAITDECSLAGVVRAHTALKE--IK 76

Query: 69   ----------------------------------------------------PIIGCQLD 76
                                                                 IIG +L+
Sbjct: 77   TERERQQKEREDKANTAQSEAPSEDGTQIEASQQETAPQETAEAEAPKPLPHLIIGSELN 136

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            +  +                 ++V L +   GY  L EL++        K S R+  S  
Sbjct: 137  LTDETG-----------DPFCTLVALATNRNGYGNLSELITLARSRAD-KGSYRLGPSDF 184

Query: 137  QE--IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYD 193
                     L  L       + +           +           R ++ L+    G D
Sbjct: 185  TASLPHLAHLKTLPDCVLMLVPQRTAT--LSHTLRCAHWLASFAAQRAWIALELWQTGSD 242

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
              +   +  ++    LPLVA    L  +       D + A+   T +SQ     +  +  
Sbjct: 243  DLQIDALRMISKASGLPLVAAGGVLMHARSRKPLQDTMTAIGLVTPLSQ-CGHALEANAE 301

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
               R+ +        + LE T+ IA  C F L       P  +    +       + LR 
Sbjct: 302  RHMRTRVRLGKLYPRDTLEETLRIAALCRFSLDELKYEYPEELVPAGE----SPSSYLRK 357

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
              +AG   R  +G   K         +++ EL +IA +K+  YFL V D + +A+  NI 
Sbjct: 358  LVMAGAMERWPKGIDLKRIG------QIEKELGLIADLKYEKYFLTVHDIVSFARSRNIL 411

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
               GRGS A S+  Y L +T+IDP+  ++L ERF++  R   PD D+DF   RR+EVI+Y
Sbjct: 412  -CQGRGSAANSIVCYCLHVTEIDPVHMNMLIERFISRARNEPPDIDVDFEHQRREEVIQY 470

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            +  KYG  R A   +  +  A++AL+DVG+AL +  S ++R+ K            + +A
Sbjct: 471  IYTKYGRHRAALTASLITYHARSALKDVGKALGLEVSLIERISKSQQWWDGTDAVAKYLA 530

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            +                L+ ++++L    RH S H  G VI    LS+LVP+      D 
Sbjct: 531  E----AGFDANSHITQNLIRLTKELRAFPRHLSQHVGGFVIAKDKLSRLVPIENATMKDR 586

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE--TYHL 611
             V +++   I+   L+K D L L  L+ ++++L+F+A R      S+      +   Y +
Sbjct: 587  SVIEWDKDDIDALKLLKVDVLALGMLSAIRRALEFVALRRGFPKFSVQDIPREDRAVYEM 646

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKE 669
                 T+G+FQ+ES   +  L  ++P+   D++  V++ RPGPI   +V+    RK G E
Sbjct: 647  CGHADTIGVFQIESRAQQSMLPRLKPNKYYDLVIEVAIVRPGPIQGGMVHPYLRRKQGLE 706

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM-DKQ 728
             +      + P+L+ T GV I+QEQVM +A + + Y+  +AD LRRAM    +     K 
Sbjct: 707  AVDYAKDELRPVLERTLGVPIFQEQVMHLAMVAAKYTGEQADQLRRAMAAWRRSGNLAKY 766

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            ++       K G  +     I + +  F +YGF +SHAA++A++ Y +AW+K + P  FL
Sbjct: 767  QKDLNERMLKRGYEQEFIDRICKQIEGFGEYGFPESHAASFALLVYLSAWLKRYEPAAFL 826

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-----VGDNRI-------- 835
            A  +  +        +  QDA++  ++++PP V     +           RI        
Sbjct: 827  AGLLNSQPLGFYSPSQLVQDAKRHGVEVLPPDVTLSDWESTFERRGHEGQRISADETCLH 886

Query: 836  ----YYSLAAIKGVG----------TTTARHIMEAS--------ADKPFDSLEDFCSRVD 873
                  S   ++ +              A+ +            A  P         R+ 
Sbjct: 887  RQQAVLSAQQLRDLSLRRLTVSRTVRRAAQRLTARVFQPSHTYGARGP-------AVRIG 939

Query: 874  ---SKKLNRRVLESLVFAGA-----L-DCFGYSRMQLLQ--------------SLDNIQK 910
                K  ++   E  + A A       D    +R   L               S+   ++
Sbjct: 940  MHLIKGFSQAAAER-IMA-ARNEAPFTDVDDLARRAALTRRDLEALAAANALVSIAGHRR 997

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
             A W    +    + +   +       + L + +    S    ++   LG   + HPL +
Sbjct: 998  EAWWAVTAQHTVPKLL--RDAPIAEAPLMLPQAAE---SREIVDDYASLGLTLNRHPLAL 1052

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +  L +   +   E  A   G   R   +V  +Q+  T  G+   +V+  +        
Sbjct: 1053 LRARLAQHRFRTAAELAACQHGTLARACGIVTVRQRPGTANGT--VFVSIEDETGSINVI 1110

Query: 1031 FFP 1033
             +P
Sbjct: 1111 VWP 1113


>gi|312862976|ref|ZP_07723216.1| DNA polymerase III, alpha subunit [Streptococcus vestibularis F0396]
 gi|322516651|ref|ZP_08069564.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            vestibularis ATCC 49124]
 gi|311101836|gb|EFQ60039.1| DNA polymerase III, alpha subunit [Streptococcus vestibularis F0396]
 gi|322124816|gb|EFX96243.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            vestibularis ATCC 49124]
          Length = 1036

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 292/1025 (28%), Positives = 486/1025 (47%), Gaps = 100/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S YS ++  + LN  + +       +I + D +NL++A  F+Q A   G++P+
Sbjct: 2    FAQLDTKSVYSFMDSVVDLNTYVKRAKELGYQSIGLMDRDNLYAAYHFAQLAIRNGLRPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + ++                       LL    +GY+ L++L + +     G++   
Sbjct: 62   IGIEANLFYDGRKIPFR-------------LLAKNNQGYKNLMKLATEL---SSGQREFT 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +   +L +I    LI+ +         +                    G  +++ +   R
Sbjct: 106  LFSDYLNDIA---LIIPS--EDWEPGMSL-------------------GSEVFIGV---R 138

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D              + P+V  +   +    D      L A++ +  +S+     +  
Sbjct: 139  PEDA---------GKEFDYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEASICPMNQ 189

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
               L +  EM S +SD+PEAL N  ++    ++       +          +      ++
Sbjct: 190  --LLFSPQEMESAYSDIPEALNNLEQLVSDITYQFDTDLKLPR-------FNRDMPAVDQ 240

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  A +G          +K      Y++RLD EL++I +M F  YFLIV D +++ +  
Sbjct: 241  LRQLAQSG--------LDSKALREPVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSR 292

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ AY L IT IDP++  LLFERFLN +R SMPD DID     R E 
Sbjct: 293  GYYMGMGRGSAAGSLVAYVLDITGIDPVKNDLLFERFLNEERYSMPDIDIDLPDIYRSEF 352

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV+++YG +  AQI+TF +  AK A+RDV +       ++ +L K I           
Sbjct: 353  LHYVRDRYGSKHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKISFRDNLT---S 409

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+         R  EI++ +EG  R  S HAAGIV+ D  L+  +P+     
Sbjct: 410  VYEKNMSFRQLINQRQEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTNHIPLKTG-- 467

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFLAQRGVKVDLSLIPFDDHETY 609
             D+ VTQ++   +E  GL+K DFLGL+ LT +QK       ++G+ +D+  I  +D +T 
Sbjct: 468  EDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGIAIDIKSIDLEDSQTL 527

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E +G    L+ ++P   E+++A  SL RPG  D    +  RK GKE
Sbjct: 528  ALFASGKTKGIFQFEQAGAINLLKRIKPTKFEEVVATTSLNRPGASDYTDNFIARKYGKE 587

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  I P++ P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK   EM K  
Sbjct: 588  KVDLIDPVVAPILEPTYGIMLYQEQVMQIAQVFAGFTLGKADLLRRAMSKKDANEMSKMS 647

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E F+ G+ + G    IA  +F ++AKFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 648  EEFMKGSRRFGRDPQIAERLFSMMAKFAGYGFNRSHAYAYSALAFQLAYFKTHYPQIFYD 707

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +            + +DA +    +    +N      K+ D +I   L  IKG+    
Sbjct: 708  VMLN------YSSSDYIKDAIENGFSLASLDINRIPYLDKISDGKIVLGLKTIKGLPRDF 761

Query: 850  ARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            A  I+E    +  + S+EDF +R+ SK     +L  L+  G  D F  +R +++ +L N+
Sbjct: 762  ALWIIEERKQNGKYISIEDFLTRIPSKYQKVDILTPLIQIGLFDIFEPNRQKIIGNLSNL 821

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +   +         ++FA    ++ +          + + R+  EQ +LG   S HPL
Sbjct: 822  FTFVNEL--------GSLFAESSYSWVEY------EDYSQTERYSIEQDLLGVGLSTHPL 867

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                 + +KM  + Y+        +   +   + S +  +T+KG ++ +++  +   + +
Sbjct: 868  ----HLAQKMTSRPYQPISELALNSKATVLVQLESVRIIRTKKGDQMAFLSVFDGVNKLD 923

Query: 1029 ANFFP 1033
               FP
Sbjct: 924  VTLFP 928


>gi|322372809|ref|ZP_08047345.1| DNA polymerase III, alpha subunit [Streptococcus sp. C150]
 gi|321277851|gb|EFX54920.1| DNA polymerase III, alpha subunit [Streptococcus sp. C150]
          Length = 1036

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 298/1025 (29%), Positives = 484/1025 (47%), Gaps = 100/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S YS ++  + L + + +       A+ + D +NL++A  F+Q A   G++P+
Sbjct: 2    FAQLDTKSVYSFMDSVVDLPSYVKRAKELGYQALGLMDRDNLYAAYHFAQLATKNGLRPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + ++  +  +                 LL    +GY+ L++L +   L    ++   
Sbjct: 62   IGMEANLVYEGRMIAFR-------------LLAKNNQGYKNLMKLATE--LSSGQRE--- 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               + L     E + ++          A                   F   +++ +   R
Sbjct: 104  --FTALSNYLNE-IALILPSEEWEPGMA-------------------FESDVFIGV---R 138

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D              + P++  +   +    D     +L A++ +  +S+     +  
Sbjct: 139  PEDA---------GKEFDYPVLPLHTVRYFDNVDRSTIQMLHAISQNVSLSEASICPMN- 188

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
               L +  EM S  SD+P+AL N  ++    ++       +          +      ++
Sbjct: 189  -QLLFSPQEMESAHSDIPDALNNLDQLVSDITYQFDTELKLPR-------FNRDMLAVDQ 240

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  A  GLE         K   A  Y++RLD EL VI +M F  YFLIV D +++ +  
Sbjct: 241  LRQLAQDGLE--------TKELTASVYQERLDKELAVIHQMGFDDYFLIVWDLLRFGRSR 292

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R +MPD DID     R E 
Sbjct: 293  GYYMGMGRGSAAGSLVAYALDITGIDPVKNDLLFERFLNEERYTMPDIDIDLPDIYRSEF 352

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV+++YG    AQI+TF +  AK A+RDV +       ++ +L K I           
Sbjct: 353  LHYVRDRYGSMHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKISFRDNLT---S 409

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+     P   R  EI++ +EG  R  S HAAGIV+ D  L++ +P+     
Sbjct: 410  VYEKNMSFRQLINQRPEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTEHIPL--KAG 467

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFLAQRGVKVDLSLIPFDDHETY 609
             D+ VTQ++   +E  GL+K DFLGL+ LT +QK       ++GV +D+  I  +D +T 
Sbjct: 468  EDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGVVIDIKSIDLEDSQTL 527

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E +G    L+ ++P   E+++A  SL RPG  D I  +  RK GKE
Sbjct: 528  ALFASGKTKGIFQFEQAGAINLLKRIKPSQFEEVVATTSLNRPGASDYIDNFIARKYGKE 587

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  I P++  +L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK   EM K  
Sbjct: 588  KVDLIDPVVAHILEPTYGIMLYQEQVMQIAQVFAGFTLGKADLLRRAMSKKDANEMSKMS 647

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E F+SG+ + G +  IA  +F ++AKFA YGFN+SHA AY+ +++Q A+ K+HYP  F  
Sbjct: 648  EAFMSGSQQLGRNPQIAERLFSMMAKFAGYGFNRSHAYAYSALAFQLAYFKSHYPQVFYD 707

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +            + +DA      +    +N      K+ D +I   L  IKG     
Sbjct: 708  VMLN------YSSSDYIKDAIGNGFSLARLDINRIPFHDKISDGKIVLGLKTIKGFPRDF 761

Query: 850  ARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            A  I+E    +  + S+EDF +R+  K     VL  LV  G  D F  +R +++ +L N+
Sbjct: 762  ALWIIEDRKENGKYVSIEDFLTRIPKKYQKVEVLTPLVHIGLFDIFETNRQKIIGNLSNL 821

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +   +         ++FA    ++ D          +   R+  EQ +LG   S HPL
Sbjct: 822  FTFVNEL--------GSLFAESSYSWVDY------DDYSQIDRYNMEQELLGVGLSPHPL 867

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                 + +KM    Y+        +   +   + S +  +T+KG R+ +++ S+   + +
Sbjct: 868  ----HLAQKMATHPYQPISDLTVNSKATVLVQLESVRIIRTKKGDRMAFLSVSDGINKLD 923

Query: 1029 ANFFP 1033
               FP
Sbjct: 924  VTLFP 928


>gi|327461490|gb|EGF07821.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK1]
          Length = 1042

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 291/1023 (28%), Positives = 484/1023 (47%), Gaps = 98/1023 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 9    IQLDTKTVYSFMDSLIPIKKYVQKAKELGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 68

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +L +  ++                 + LL   ++GY+ L++ VS + ++ Q       
Sbjct: 69   GLELSLIKEEREL-------------HLRLLALDSQGYRNLMK-VSTLKMMGQKN----- 109

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                 Q +  +GL ++     G  D                      G   YV +     
Sbjct: 110  -WEDFQHLF-KGLAVIVPAFDGVADLDL-------------------GLDFYVGVFPATP 148

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                              P +  +   +    D E   +L A+  +  +  ++   +   
Sbjct: 149  K------------QEFGWPTLPLHTVRYFDTGDLETLQMLRAIRENASL--REIGSLPNH 194

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +L     +   F +        +E   R           LPR       + ++    EL
Sbjct: 195  EFLLAPDALAGAFKETFPESLANLEKLVRHVHYDINRELKLPR------FNRERPAVEEL 248

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R ++ AGL+         +G   + Y++RLD EL+VI +M F  YFLIV D +++ +   
Sbjct: 249  RERSEAGLKK--------RGLTGKLYQERLDQELDVIHQMGFDDYFLIVWDLLRFGRSQG 300

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E I
Sbjct: 301  YYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPEFI 360

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +      A
Sbjct: 361  RYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLTT---A 417

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+      
Sbjct: 418  YEKNMAFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPLKYG--E 475

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D ET  
Sbjct: 476  DMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIAEIDLEDAETLK 535

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E  G    L  +QP C E+++A  SL RPG  D I  +  RK+G E+
Sbjct: 536  LFAAGQTKGIFQFEQPGAISLLNRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGLEQ 595

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + +E
Sbjct: 596  VELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAAEMHRMQE 655

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F   
Sbjct: 656  DFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAFFKAHYPDVFFDV 715

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA  F+ +  P S+N      K  D +I+  L  IKG+    A
Sbjct: 716  MLN------YSSSDYITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLPRDLA 769

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L N+  
Sbjct: 770  YWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLPNLFV 829

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            +A  +         ++FA    ++++          + + +FE EQ ++G   S HPL  
Sbjct: 830  FADEL--------GSLFADTTYSWTEA------QDFSDAEKFELEQSIIGVGLSDHPL-- 873

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                L K   + +         +  ++ A V + +  +T+KG  + ++  S+  K+ +  
Sbjct: 874  --VKLAKEADQPFSWISELTENSRAKILAQVQTIKTIRTKKGENMAFLQVSDTKKKLDVT 931

Query: 1031 FFP 1033
             FP
Sbjct: 932  LFP 934


>gi|228476876|ref|ZP_04061521.1| DNA polymerase III subunit alpha [Streptococcus salivarius SK126]
 gi|228251450|gb|EEK10595.1| DNA polymerase III subunit alpha [Streptococcus salivarius SK126]
          Length = 1036

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 289/1025 (28%), Positives = 488/1025 (47%), Gaps = 100/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S YS ++  + LN+ + +       A+ + D +NL++A  F+Q A   G++P+
Sbjct: 2    FAQLDTKSVYSFMDSVVDLNSYVARAKELGYQALGLMDRDNLYAAYHFAQLASRNGLRPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + ++  +                    LL    +GY+ L++L +   L    ++   
Sbjct: 62   IGMEANLFYEGRKIPFR-------------LLAKNNQGYKNLMKLATE--LSSGQRE--- 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               +   +   + + ++                               G  +++ +   R
Sbjct: 104  --FTAFSDYLND-IALILPSEDWEPGMTL-------------------GSEVFIGV---R 138

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D              + P+V  +   +    D     +L A++ +  +S+     +  
Sbjct: 139  PEDA---------GKEFDYPVVPLHTVRYFENSDRSTIQMLHAISQNVSLSEASICPMNQ 189

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
               L +  E+ S +SD+PEAL N  ++    ++       +          +      ++
Sbjct: 190  --LLFSPQEIESAYSDIPEALNNLEQLVSDITYQFDTDLKLPR-------FNRDMPAVDQ 240

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  A +GLE        +K   +  Y++RLD EL++I +M F  YFLIV D +++ +  
Sbjct: 241  LRQLAQSGLE--------SKKLTSPVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSR 292

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ AY L IT IDP++  LLFERFLN +R SMPD DID     R E 
Sbjct: 293  GYYMGMGRGSAAGSLVAYVLDITGIDPVKNDLLFERFLNEERYSMPDIDIDLPDIYRSEF 352

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV+++YG +  AQI+TF +  AK A+RDV +       ++ +L K I           
Sbjct: 353  LHYVRDRYGSKHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKISFRDNLT---S 409

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+         R  EI++ +EG  R  S HAAGIV+ D  L+  +P+     
Sbjct: 410  VYEKNMSFRQLINQRQEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTNHIPL--KAG 467

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFLAQRGVKVDLSLIPFDDHETY 609
             D+ VTQ++   +E  GL+K DFLGL+ LT +QK       ++G+ +D+  I  +D +T 
Sbjct: 468  EDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGITIDIKSIDLEDPQTL 527

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E +G    L+ ++P   E+++A  SL RPG  D    +  RK GKE
Sbjct: 528  ALFASGKTKGIFQFEQAGAINLLKRIKPAKFEEVVATTSLNRPGASDYTDNFIARKYGKE 587

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  I P++ P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK   EM K  
Sbjct: 588  KVDLIDPVVAPILEPTYGIMLYQEQVMQIAQVFAGFTLGKADLLRRAMSKKDANEMSKMS 647

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E+F+ G+ + G    IA  +F ++AKFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 648  EQFMEGSRQLGRDPQIAERLFSMMAKFAGYGFNRSHAYAYSALAFQLAYFKTHYPQIFYD 707

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +            + +DA +    +    +N      K+ D +I   L  IKG+    
Sbjct: 708  VMLN------YSSSDYIKDAIENGFSLARLDINRIPYLDKISDGKIVLGLKTIKGLPRDF 761

Query: 850  ARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            +  I+E    +  + S+EDF +R+ SK     +L  L+  G  D F  +R +++ +L+N+
Sbjct: 762  SLWIIEDRKQNGKYISIEDFLTRIPSKYQKVDILTPLIQIGLFDIFEPNRQKIIGNLNNL 821

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +   +         ++FA    ++ D          + + R+  EQ +LG   S HPL
Sbjct: 822  FTFVNEL--------GSLFAESSYSWVDY------EDYSQTDRYNLEQELLGVGLSPHPL 867

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                 + +KM  + Y+            +   + S +  +T+KG ++ ++  ++   + +
Sbjct: 868  ----HLAQKMASRPYQPISDLTVNTKATVLVQLESVRIIRTKKGDQMAFLNVTDGINKLD 923

Query: 1029 ANFFP 1033
               FP
Sbjct: 924  VTLFP 928


>gi|227502752|ref|ZP_03932801.1| error-prone DNA polymerase [Corynebacterium accolens ATCC 49725]
 gi|227076482|gb|EEI14445.1| error-prone DNA polymerase [Corynebacterium accolens ATCC 49725]
          Length = 1039

 Score =  475 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 266/1031 (25%), Positives = 437/1031 (42%), Gaps = 100/1031 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   SSYS L+GA     ++ +        +A+ D +  +  ++F++ A  AG+  +
Sbjct: 48   FAELHAVSSYSFLDGAAEPEELVARALELGLEGLAVVDRDGFYGLMKFAEAAAKAGLPAM 107

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +                     + +L  T EGY+RL  L++R  +    K SV 
Sbjct: 108  YGAELSLAEAP-----------------VTVLARTPEGYRRLSRLIARARMDAGEKGSVA 150

Query: 131  I-CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
               L  +     E    L G               +  +K     +++  D + +     
Sbjct: 151  YPPLDAVARELEEECFFLLG--------------WEAIQKIDHVLERIKIDSIVLEYACT 196

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRV 248
               +       +     + L  +AT      + +         A+AH  ++         
Sbjct: 197  MSPEDADHHGFLD--KYNNLRAIATARPAAATRDQVRLAAAKRALAHRQSLEEAAPDAHP 254

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                ++++  +M  +    PE +  TV +AR CSF     AP LP F+  E       E 
Sbjct: 255  MGAGWMRSGEQMAQLLPGRPELIAETVHLARECSFTWGALAPNLPDFVVPEG----HTEM 310

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            + L ++     + R A         A+   +++  EL +I ++ F GYFLIV D + + +
Sbjct: 311  SWLEHEVWRRGKKRYASRPPEIQARAK---KQMRHELGIIKQLGFPGYFLIVCDLVDFCR 367

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
            + NI    GRGS A S   +AL IT+ +P+   LLFERFL+PDR   PD DID    RR+
Sbjct: 368  QENIL-CQGRGSAANSAVCFALGITNAEPISAQLLFERFLSPDRDGPPDIDIDIESGRRE 426

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EVI+YV   +G +R AQ+    + + K A RD  RAL  P    D   K I   PA    
Sbjct: 427  EVIQYVYRTHGRDRAAQVANVITYRRKGATRDAARALGYPQGSADAWSKGIAELPA---- 482

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                                  +  ++++     RH   H+ G+V+ DRP++ +VPM   
Sbjct: 483  ---------------------DVSLLAEQFLDQPRHLGIHSGGMVLCDRPIADVVPMEWA 521

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
                  V Q++      AGL+KFD LGL  L  L   +D +      +V L  +   +  
Sbjct: 522  RMEGRSVLQWDKDDCAAAGLVKFDLLGLGMLEALHHMIDAVRATTGREVRLWELDLAEPA 581

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRK 665
             Y +L     +G+FQ+ES      L  ++P C  D++  V+L RPGPI   ++  Y  R+
Sbjct: 582  VYDMLCRADAVGVFQVESRAQLATLPRLKPRCFFDLVVEVALIRPGPIQGGSVHPYLRRR 641

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEE 724
            +G E +   HP+++  L +T G+ ++QEQ+MQIA   +G++ +EAD LRRAM  K+   +
Sbjct: 642  DGLEPVTYDHPVLEKSLGKTLGIPLFQEQLMQIAVDAAGFTGAEADDLRRAMGSKRSPAK 701

Query: 725  MDKQKERFISGAS-KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            M   + RF  G    NGI   +A  ++  +  FA YGF +SH+ ++A + Y +AW K HY
Sbjct: 702  MAALRSRFFEGLRATNGIDGEVAEKLWAKITAFAAYGFPESHSQSFASLVYFSAWFKHHY 761

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAI 842
            P EF    +  +       +   QDAR+  ++++P S+N      +      I   L  I
Sbjct: 762  PAEFCVGLLRAQPMGFYSPQSLIQDARRHGVRVLPLSINDSGAQARALPTGEIRLGLNLI 821

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KG+G   A  +  A    PF S+ D   R D   L+   +E+L  AGAL+C G  R Q L
Sbjct: 822  KGLGDKAAERVEAA---APFSSVSDLSRRAD---LSVEQVEALATAGALECLGLERRQAL 875

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
                         E+       +  A                  ++      +    G  
Sbjct: 876  WQAG-----VAATEREGMLPGTSALAS-----------PHLPGMSAFELMATDVAATGVT 919

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
                P+++ +  L    +           G  +R+A ++  +Q+ +T  G  + ++   +
Sbjct: 920  HDKQPMELVRAALGD--VLPSSHLPHVPDGTRVRIAGIITHRQRPRTASG--LTFLGVED 975

Query: 1023 PAKEYEANFFP 1033
                      P
Sbjct: 976  ETGLMNVMVSP 986


>gi|251782507|ref|YP_002996809.1| DNA polymerase III DnaE [Streptococcus dysgalactiae subsp.
            equisimilis GGS_124]
 gi|242391136|dbj|BAH81595.1| DNA polymerase III alpha subunit [Streptococcus dysgalactiae subsp.
            equisimilis GGS_124]
 gi|323127393|gb|ADX24690.1| DNA polymerase III DnaE [Streptococcus dysgalactiae subsp.
            equisimilis ATCC 12394]
          Length = 1036

 Score =  475 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 293/1025 (28%), Positives = 490/1025 (47%), Gaps = 100/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L++  ++        I I D +NL+ A  F +     G++P+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLSHYFEQAKQLGYQTIGIMDRDNLYGAYHFIRGCQKHGLRPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++++  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEVVYQEQQVL-------------LNLIAKNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L +   EGL ++       I    + ++  V                Y+ + ++ 
Sbjct: 102  LQMDYLCQ-HLEGLAVI-------IPNRVWTDTLAV------------PFDYYIGVDQYT 141

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             +           +    +PL       + +++D E   +L A+  + +   +     + 
Sbjct: 142  DFSHMD-------SKKQFIPL---RTVRYFAQDDMETLHMLHAIRDN-LSLAETPVVESD 190

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                  +       +  P+AL+N  ++     +       +          +  K  + E
Sbjct: 191  QELGDCQQLTAYYQAHCPQALQNLEDLVSGIHYDFDTDLKLPR-------FNRDKSAKQE 243

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L+    AG         +AKG   + Y+ RL  EL VI+ M F  YFLIV D +++ +  
Sbjct: 244  LQELTQAG--------LVAKGLWQEPYQTRLAHELTVISDMGFDDYFLIVWDLLRFGRSK 295

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ AYAL IT IDP+R  LLFERFLN +R SMPD DID     R E 
Sbjct: 296  GYYMGMGRGSAAGSLVAYALDITGIDPIRHDLLFERFLNKERYSMPDIDIDLPDIYRSEF 355

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I           
Sbjct: 356  LRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGF---KDSLAT 412

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+   +     +   I+Q++EG  R  S HAAGIV+ D  L+  +P+     
Sbjct: 413  VYEKNISFRQTINSRVEFQKAFTIAQRIEGNPRQTSIHAAGIVMSDDNLTNHIPL--KAG 470

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             ++ VTQ++   +E  GL+K DFLGL+ LT +QK  + +A+     +D++ I  +D +T 
Sbjct: 471  DEMMVTQYDANAVEANGLLKMDFLGLRNLTFVQKMQEKVAKEYGQHIDIAAIDLEDPKTL 530

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D  V +  R+ G+E
Sbjct: 531  ALFAKGDTRGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTVNFIKRRQGQE 590

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  I P+I P+L+ T G+++YQEQVMQIAQ  +G++L +AD+LRRAM KK   EM K +
Sbjct: 591  KIDLIDPVIAPILESTYGIMLYQEQVMQIAQAYAGFTLGKADLLRRAMSKKNLLEMQKME 650

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E F++GA + G S+  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F  
Sbjct: 651  EAFVAGAKQLGRSEETAKLLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFYD 710

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              M            +  DA + N Q+   ++N+     K+  N IY  L  IKG+    
Sbjct: 711  IMMN------YSSSDYITDALESNFQVAQVTINSIPYTDKIESNSIYMGLKNIKGLPRDF 764

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E     PF S+EDF +RV  K      LE L+  G  DCF  +R ++L++L+ + 
Sbjct: 765  AYWIIEQR---PFSSVEDFLTRVPEKYQKIAFLEPLIKIGLFDCFDPNRKKILENLEGLL 821

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             +   +         ++FA     + D          +++ ++  EQ ++G   S HPL 
Sbjct: 822  VFVNEL--------GSLFADSSFNWGDT------EDYSTTEKYSFEQELIGVGMSKHPLI 867

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYE 1028
                           + V   +     +   V S +  +T+  G ++ +++ ++  K+ +
Sbjct: 868  DIAEK-STQAFTPISQLV---KDKEATILVQVDSIRTIRTKTSGQQMAFLSVNDTKKKLD 923

Query: 1029 ANFFP 1033
               FP
Sbjct: 924  VTLFP 928


>gi|323499375|ref|ZP_08104351.1| error-prone DNA polymerase [Vibrio sinaloensis DSM 21326]
 gi|323315560|gb|EGA68595.1| error-prone DNA polymerase [Vibrio sinaloensis DSM 21326]
          Length = 1023

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 252/1035 (24%), Positives = 429/1035 (41%), Gaps = 82/1035 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA--GIQ 68
            +  L   S++S L GA     +L +    +  +IAITD  ++   +   +   +    I+
Sbjct: 3    YAELFCQSNFSFLTGASHAEELLLQADFLRYHSIAITDECSVAGVVRAYRAVTSNQLNIK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG    ++ +                  +VL+  T + Y  L  +++      + K  
Sbjct: 63   LIIGSMFWLNSE----------------CQVVLICPTKQAYSELCRVITNARRRSE-KGQ 105

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             ++    L  +    +I L                 +   K      +    RL++ LQR
Sbjct: 106  YQLSEWDLMTVRHCLVIWLP-------------RQQESDRKWGQWLSQHHKHRLWIGLQR 152

Query: 189  H-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H    D+       QLA    LP+ A    L  +        V+ A+     V Q     
Sbjct: 153  HLEANDKAYTQHCEQLAQELMLPITACGGVLMHTATRLPLQHVMTAIKQGQSVEQIGSHL 212

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +T         E ++     PE L+ +V IA RC F L+      P  +  + +      
Sbjct: 213  LTNTERALRSKEKLAKL-YKPEWLQESVHIAERCEFKLKELQYQYPSELVPDGE----TP 267

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR     G   R   G  A         + ++ EL +I  + F  YFL + D + +A
Sbjct: 268  NSYLRKLVEKGKRQRFPNGLPAN------VAETIEKELALIEELGFPFYFLTIHDIVMFA 321

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+N+I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +RR
Sbjct: 322  KRNHILY-QGRGSAANSVVCYCLEITSVDPRQISVLFERFISRERDEPPDIDVDFEHERR 380

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  SQ+D   K +        
Sbjct: 381  EEVIQYIYQKYGRERAALAATVISYRFKSAVRDVGKALGIEESQLDYFIKNVNRRDRSQG 440

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                I +    +   +       L+          RH S H  G VI   PL +LVP+  
Sbjct: 441  WQAQIVELG-LQPDSMKGEQFIELVNDILGF---PRHLSQHVGGFVIAAGPLHELVPVEN 496

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVDLSLIPFD 604
                D  V Q++   +E   L+K D L L  LT ++K  D + +   + + +       D
Sbjct: 497  AAMPDRTVIQWDKDDLESLKLLKVDVLALGMLTAIRKCFDLVKRLDNQVLSIAEITRRQD 556

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662
            D   Y ++    T+G+FQ+ES      L  ++P    D++  +++ RPGPI   +V+   
Sbjct: 557  DPNVYDMIQQADTVGVFQIESRAQMSMLPRLKPATYYDLVIQIAIVRPGPIQGDMVHPFL 616

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R++G E +      ++ +L  T GV I+QEQV+++A + +G+S  EAD LRRAM    K
Sbjct: 617  KRRDGIEPVTYPSKEVEEVLSRTMGVPIFQEQVIKLAMVAAGFSGGEADSLRRAMAAWKK 676

Query: 723  EEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
                 K K + I G    G  +  A  IF+ +  F +YGF +SH+A++AV++Y +AW+K 
Sbjct: 677  NGDLIKFKNKLIEGMRSRGYEQEFAERIFDQILGFGEYGFPESHSASFAVLAYCSAWLKY 736

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNRIYY 837
            +YP  F  + +           +  QDA++ ++ ++P  VN    D +V        I  
Sbjct: 737  YYPEAFYTSLLNSLPMGFYSASQLVQDAKRHDVLVLPVCVNQSLYDHQVVKCGNKLAIRL 796

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
                IKG    ++  +++   ++ F              L+RR +E L  A A+     +
Sbjct: 797  GFRQIKGFSRESSLQVIKVRGNQSFSHPNQL----KHIGLSRRDIELLASADAMQAIAQN 852

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R Q   S+ +        +  +  + E++                 +  ++      +  
Sbjct: 853  RYQARWSMMDSLSDLPLFQ--QIQEQESL---------------TLTQPSAVQTLLEDYS 895

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
              G     HP+ + +            + +     + + +  +V  KQ   T  G  + +
Sbjct: 896  ATGLSLQQHPIALLEKAGSLGKFTRQRDLIKHAHQSLVTVVGVVTGKQAPGTAAG--VTF 953

Query: 1018 VTFSEPAKEYEANFF 1032
             T  +         +
Sbjct: 954  FTLEDDTGNINVVVW 968


>gi|322385804|ref|ZP_08059448.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            cristatus ATCC 51100]
 gi|321270542|gb|EFX53458.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            cristatus ATCC 51100]
          Length = 1036

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 295/1023 (28%), Positives = 486/1023 (47%), Gaps = 98/1023 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS ++  +S+   + +       ++ + D +NL+ A  F ++A AAG+QP++
Sbjct: 3    TQLDTKTVYSFMDSLVSIKKYVQRAKGLGYKSLGMMDVDNLYGAYHFLEEAKAAGLQPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++++    N                + LL   ++GY+ L+++ +   +  Q       
Sbjct: 63   GLEMEVFKDGNPLN-------------LRLLALDSQGYRNLMKISTLKMMNRQ------- 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                 Q +  +GL ++     G +D+             L  +  +F D     L R   
Sbjct: 103  NWEDFQHLF-KGLALIVPIFEG-VDQLDLG---------LDFYVGVFPDTPRQELTR--- 148

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                              P++  +   +  + D E   +L A+  +  +S ++   ++  
Sbjct: 149  ------------------PVLPLHTVRYFEQGDLETLQMLRAIRDN--ISLREVGHLSSH 188

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +L     +   F++        +E               LPR       + ++    EL
Sbjct: 189  EFLLAPESLEETFAENFPESLTNLEKLVAGVHYEINTELKLPR------FNPERPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R  A  GL  R   G        + Y+ RLD EL+VI +M F  YFLIV D +++ +   
Sbjct: 243  RELAETGLAKRGLAG--------EVYQARLDQELDVIHQMGFDDYFLIVWDLLRFGRSQG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP+  +LLFERFLN +R +MPD DID     R E I
Sbjct: 295  YYMGMGRGSAVGSLVAYALEITGIDPVEKNLLFERFLNLERYTMPDIDIDIPDVYRPEFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I           A
Sbjct: 355  RYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNMTKKIGFRDNLTT---A 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  FR+   +     +  EI++K+EG  R  S HAAG+V+ D  L+  +P+      
Sbjct: 412  YERNIAFRQIINSKLEYQKAFEIAKKIEGNPRQTSIHAAGVVMSDDDLTNQIPLKYG--E 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +    +  V +D++ I  +D ET  
Sbjct: 470  DMYITQYDAHGVESNGLLKMDFLGLRNLTFVQQMKEAALDKYGVDIDIARIDLEDEETLR 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E +G    L+ +QP   E+++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530  LFAAGNTKGIFQFEQAGAISLLKRVQPVKFEEVVATTSLNRPGASDYIDNFVKRKHGRER 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  I P ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + +E
Sbjct: 590  VEMIDPSLEDILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAAEMHQMEE 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ GA K G S+T A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F   
Sbjct: 650  EFVKGAVKLGHSETKAKEVFAVMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPDIFFDV 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA  F  ++ P +++      K  + +IY  L  IKG+    A
Sbjct: 710  MLN------YSSSDYITDALGFGFELAPLTIHNIPYKDKFQERKIYLGLKNIKGLPRDFA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E     PF S+EDF  R+        +L  LV  G  D F  +R ++L +L N+  
Sbjct: 764  FWIIEERQKNPFSSVEDFILRLPQSYHKLPLLSPLVQLGLFDVFEPNRQKILHNLPNLFV 823

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            +A  +         ++FA    +++D           ++ +FE EQ ++G   S HPL  
Sbjct: 824  FADEL--------GSLFADTSYSWTDS------EDFTAAEKFEQEQALIGIGLSDHPL-- 867

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                L K   + +         +   +   V S +  +T+ G  + ++  ++  K+ +  
Sbjct: 868  --ISLAKKANRSFVWIEELADNSKATILVEVQSIKVIRTKNGENMAFMQVTDTKKKLDVT 925

Query: 1031 FFP 1033
             FP
Sbjct: 926  LFP 928


>gi|149191860|ref|ZP_01870095.1| putative DNA polymerase III alpha chain [Vibrio shilonii AK1]
 gi|148834295|gb|EDL51297.1| putative DNA polymerase III alpha chain [Vibrio shilonii AK1]
          Length = 1023

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 240/1035 (23%), Positives = 419/1035 (40%), Gaps = 82/1035 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQ 68
            +  L   S++S L GA     ++ +    Q  AIAITD  ++  A+         G  ++
Sbjct: 3    YAELFCQSNFSFLTGASHAEELVLQAEFLQYSAIAITDECSIAGAVRAHTAIKQHGLSLK 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I+G    ++ +                   +LL  T E Y  L  +++      + K  
Sbjct: 63   QIVGSMFWLNDE----------------CQFILLSPTREAYAELCRIITNARRRCE-KGD 105

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             ++    +  +    ++ L  G    +             +      +    RL++ LQR
Sbjct: 106  YQLSEWDIMSLRHCLILWLPTGRESDV-------------RWGRWLVQYHHQRLWIGLQR 152

Query: 189  HRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   + +R       L+   +LP+ A    L  +         L A+  +T + +     
Sbjct: 153  HLTSNEHRYIQHCETLSVDLQLPITACGGVLMHTATRLPLQHTLTAIKLNTSIEKVCSHL 212

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +            +       E L  +V IA  C F L       P  +        K  
Sbjct: 213  LVNTERSLRPKTKLEKL-YRSEWLNESVYIASLCEFKLSKLRYEYPSELIPNG----KTP 267

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               LR     G   R  +G  +         Q ++ EL +I  + +  +FL + D + +A
Sbjct: 268  MGYLRELVERGKAQRFPEGLPSH------VEQTINKELALIEELDYPFFFLTIHDIVMFA 321

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+  I    GRGS A S+  Y L IT +DP + S+LFERF++ +R   PD D+DF  +RR
Sbjct: 322  KQQGILY-QGRGSAANSIVCYCLEITAVDPRQISVLFERFISKERNEPPDIDVDFEHERR 380

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KYG ER A   T  S + K+A+RDVG+AL +  +Q+D   K I        
Sbjct: 381  EEVIQYIYQKYGRERAALAATVISYRFKSAVRDVGKALGVSDTQLDYFIKNINRRDRSQG 440

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                + +       +       + +E+  ++ G  RH S H  G VI   PL +LVP+  
Sbjct: 441  WQAQLVE----LGLKPDSLKGQQFIELVNEITGFPRHLSQHVGGFVISSGPLYELVPVEN 496

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---VDLSLIPFD 604
               ++  V Q++   +E  GL+K D L L  LT ++K    + +   +   +       D
Sbjct: 497  AAMAERTVIQWDKDDLESLGLLKVDVLALGMLTAIRKCFQLINKHYGRTLTIADITRRQD 556

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
            D   Y ++    T+G+FQ+ES      L  ++P    D++  +++ RPGPI   +V+   
Sbjct: 557  DPNVYAMIQRADTIGVFQIESRAQMSMLPRLKPATYYDLVIQIAIVRPGPIQGDMVHPFL 616

Query: 665  KNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            K    +  I      ++ +L  T GV I+QEQV+++A + +G++  EAD LRRAM    K
Sbjct: 617  KRRNGEEAISYPSKEVESVLSRTLGVPIFQEQVIKLAMVAAGFTGGEADQLRRAMAAWKK 676

Query: 723  EEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
                 K + + I G    G     A  +FE +  F +YGF +SH+A++AV++Y +AW+K 
Sbjct: 677  NGDLFKFRSKLIQGMQAKGYETEFAERLFEQICGFGEYGFPESHSASFAVLAYCSAWLKH 736

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF----KVGDNRIYY 837
            +YP  F  A +           +  QDA++ ++ I P  VN                +  
Sbjct: 737  YYPDAFYTALLNSLPMGFYSSSQLLQDAKRHHVSIAPVCVNYSQYHHYLRSTPQGLVLQL 796

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
                + G+  ++ + +++    + F +     +++    LNRR LE L  A AL      
Sbjct: 797  GFRQVNGLSESSMQRLLQHRPREGFTT----ATQIKQLGLNRRELEILASANALKAISGH 852

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R     ++ +  +               +F  EK   SD  +L      +       +  
Sbjct: 853  RYATRWAMMDNLQD------------LPLFKAEK---SDDSSLPHQP--SPIEDMLEDFS 895

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             +    + HP+ +     +        +       + + +   V  KQ   T  G  + +
Sbjct: 896  AMNVSLNQHPITLLDQAGKLGRFTRMRDLTLKPHKSLVTVVGTVTGKQSPGTAAG--VTF 953

Query: 1018 VTFSEPAKEYEANFF 1032
             T  +         +
Sbjct: 954  FTLEDDTGNINVVVW 968


>gi|312278519|gb|ADQ63176.1| DNA polymeraDNA polymerase III alphase III alpha subunit
            [Streptococcus thermophilus ND03]
          Length = 1036

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 280/1025 (27%), Positives = 478/1025 (46%), Gaps = 100/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S YS ++  + LN  + +       +I + D +NL++A  F+Q A   G++P+
Sbjct: 2    FAQLDTKSVYSFMDSVVDLNTYVKRAKELGYQSIGLMDRDNLYAAYHFAQLAIRNGLRPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + ++  +                    LL    +GY+ L++L +   L    ++   
Sbjct: 62   IGTEANLFYEGRKIPFR-------------LLAKNNQGYKNLMKLATE--LSSGQRE--- 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               ++  +   + + ++          +                    G  +++ +   R
Sbjct: 104  --FTYFSDYLND-IALILPSEDWEPGMSL-------------------GSEVFIGV---R 138

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D              + P+V  +   +    D      L A++ +  +S+     +  
Sbjct: 139  PEDA---------GKEFDYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEVSICPMNQ 189

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              +            ++ EA     E     + ++   +      ++    + +    ++
Sbjct: 190  LLF---------SAKEMEEAYSKLPEALNNLNQLVSDVSYQFDTNLKLPRFNREMPAVDQ 240

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  A +G          +K      Y++RLD EL++I +M F  YFLIV D +++ +  
Sbjct: 241  LRQLAQSG--------LDSKALREPAYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSR 292

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ AY L IT IDP++  LLFERFLN +R SMPD DID     R E 
Sbjct: 293  GYYMGMGRGSAAGSLVAYVLDITGIDPVKNDLLFERFLNEERYSMPDIDIDLPDIYRGEF 352

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV+++YG +  AQI+TF +  AK A+RDV +       ++ +L K I           
Sbjct: 353  LHYVRDRYGSKHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKISF---RDTLTT 409

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+         R  EI++ +EG  R  S HAAGIV+ D  L+  +P+     
Sbjct: 410  VYEKNMSFRQLINQRQEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTNHIPL--KAG 467

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFLAQRGVKVDLSLIPFDDHETY 609
             D+ VTQ++   +E  GL+K DFLGL+ LT +QK       ++G+ +D+  I  +D +T 
Sbjct: 468  EDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGIAIDIKSIDLEDSQTL 527

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E +G    L+ ++P   E+++A  SL RPG  D    +  RK GKE
Sbjct: 528  ALFASGKTKGIFQFEQAGAINLLKRIKPAKFEEVVATTSLNRPGASDYTDNFVARKYGKE 587

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  I P++ P+L+ T G+++YQEQVMQIAQ+ +G+SL +AD+LRRAM KK   EM K  
Sbjct: 588  KVDLIDPVVAPILEPTYGIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSKKDANEMSKMS 647

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E+F+ G+ + G    +A  +F ++ KFA YGFNKSHA AY+ +++Q A+ KTHYP  F  
Sbjct: 648  EQFMEGSRQLGRDPQVAKRLFSMITKFAGYGFNKSHAYAYSALAFQLAYFKTHYPQIFYD 707

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +            + +DA +    +    +N      K+ D +I   L  IKG+    
Sbjct: 708  VMLN------YSSSDYIRDAIENGFSLASLDINRIPYMDKISDGKIVLGLKTIKGLPRDF 761

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            A  I+E    +  + S+EDF +R+ SK     +L  L+  G  D F  +R +++ +L N+
Sbjct: 762  ALWIIEDRQQNGKYISIEDFLTRIPSKYQKVDILTPLIQIGLFDRFEPNRRKIIGNLSNL 821

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +   +         ++FA    ++ +          + + R+  EQ +LG   S HPL
Sbjct: 822  FTFVNEL--------GSLFAESSYSWVEY------EDYSQTERYSIEQDLLGIGLSTHPL 867

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                 + +KM  + Y+        +   +   + S +  +T+KG ++ +++  +   + +
Sbjct: 868  ----HLAQKMASRPYQPISELTLNSKATVLVQLESVRIIRTKKGDQMAFLSVFDGVNKLD 923

Query: 1029 ANFFP 1033
               FP
Sbjct: 924  VTLFP 928


>gi|324995477|gb|EGC27389.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK678]
          Length = 1069

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 292/1023 (28%), Positives = 485/1023 (47%), Gaps = 98/1023 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 36   IQLDTKTVYSFMDSLIPIKKYVQKAKELGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 95

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +L +  ++                 + LL   ++GY+ L++ VS + ++ Q       
Sbjct: 96   GLELSLIKEEREL-------------HLRLLALDSQGYRNLMK-VSTLKMMGQKN----- 136

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                 Q +  +GL ++     G  D                      G   YV +     
Sbjct: 137  -WEDFQHLF-KGLAVIVPAFDGVADLDL-------------------GLDFYVGVFPATP 175

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                              P +  +   +    D E   +L A+  +  +  ++   +   
Sbjct: 176  K------------QEFGWPTLPLHTVRYFDTGDLETLQMLRAIRENASL--REIGSLPNH 221

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +L     +   F +        +E   R           LPR       + ++    EL
Sbjct: 222  EFLLAPDALAGAFKETFPESLANLEKLVRHVHYDINRELKLPR------FNRERPAVEEL 275

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R ++ AGL+         +G   + Y++RLD EL+VI +M F  YFLIV D +++ +   
Sbjct: 276  RERSEAGLKK--------RGLTGKLYQERLDQELDVIHQMGFDDYFLIVWDLLRFGRSQG 327

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E I
Sbjct: 328  YYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPEFI 387

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +      A
Sbjct: 388  RYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLTT---A 444

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+      
Sbjct: 445  YEKNMAFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPLKYG--E 502

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D ET  
Sbjct: 503  DMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIAEIDLEDAETLK 562

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+G E+
Sbjct: 563  LFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGLEQ 622

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + +E
Sbjct: 623  VELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKSAAEMHRMQE 682

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++GA K G S+T A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K +YP  F   
Sbjct: 683  DFVAGALKLGHSETKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAYYPDVFFDV 742

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA  F+ +  P S+N      K  D +I+  L  IKG+    A
Sbjct: 743  MLN------YSSSDYITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLPRDLA 796

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L N+  
Sbjct: 797  YWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLPNLFV 856

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            +A  +         ++FA    ++++          + + +FE EQ ++G   S HPL  
Sbjct: 857  FADEL--------GSLFADTTYSWTEA------QDFSDAEKFELEQSIIGVGLSDHPL-- 900

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                L K   + +         +  R+ A V + +  +T+KG  + ++  S+  K+ +  
Sbjct: 901  --VKLAKEADQPFNWISDLTENSRARILAEVQTIKTIRTKKGENMAFLQVSDTKKKLDVT 958

Query: 1031 FFP 1033
             FP
Sbjct: 959  LFP 961


>gi|159042658|ref|YP_001531452.1| DNA polymerase III subunit alpha [Dinoroseobacter shibae DFL 12]
 gi|157910418|gb|ABV91851.1| DNA polymerase III, alpha subunit [Dinoroseobacter shibae DFL 12]
          Length = 994

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 244/1000 (24%), Positives = 414/1000 (41%), Gaps = 75/1000 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV L   S+++ L GA    +   K A    PA AI D N++   +    +         
Sbjct: 2   FVELCALSNFTFLTGASHPEDYAQKAALLGLPAFAIADVNSVAGIVRAHTELKE------ 55

Query: 71  IGCQLDI------------------------DMQDNLKMTNQGKTPFPTVPSIVLLVSTA 106
           I  Q+D+                         +++  ++    +        I  L    
Sbjct: 56  IARQIDLCATAEARDGPIGPPWPGPRSEDSAAVRNLPRLLPAARLRLREGTEITALPEDR 115

Query: 107 EGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
             + RL  L++        K    + L+ + +      ++L G    P  +     +   
Sbjct: 116 AAWGRLSRLLTLGQRR-APKGRCHLDLADVLDEADGMQLLLHGLPEAPPVQLGAGRTWPQ 174

Query: 167 AEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
           AE       + F  ++ + +   + G DR R  +   LA T  LP VA+   LF      
Sbjct: 175 AEA----LTRRFPGKVSLLMTPAYDGQDRVRFDRWAALADTLGLPTVASAAPLFHCATHR 230

Query: 226 EAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
              DVL A+ +   V    R  +   +  L++ +EM+ +F    +A+  T EIA RCSF 
Sbjct: 231 RLADVLTAIRNGCRVEDLGRTAQAHAEQRLRSEAEMLRLFRGHEDAVHRTAEIAARCSFC 290

Query: 285 LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
           L        R+         +  ++ L   A  GL  R   GA          R+ LD E
Sbjct: 291 L-----SQLRYEYPSETRGGETAQDRLSRLAHEGLRWRYRNGA------PPKVRKMLDHE 339

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
           L +I ++ ++ YFL V D + +A+  +I    GRGS A SV  Y L IT + P   +++F
Sbjct: 340 LRLIGKLGYAPYFLTVNDIVAFARSRDIL-CQGRGSAANSVVCYCLGITSVSPEVGTMVF 398

Query: 405 ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
           ERF++  R   PD D+DF  +RR+EVI+++  +YG  R     T    + K A+R+VGRA
Sbjct: 399 ERFVSEARDEPPDIDVDFEHERREEVIQHIYERYGRHRAGLCATVIHYRGKRAVREVGRA 458

Query: 465 LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
           + +    +  L   I    +     +    +               L+   Q      RH
Sbjct: 459 MGLSSDTLSALSSQIWGFGSVRGIEETRLREIGLDPTDRRLRQTIDLIYRIQGF---PRH 515

Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            S H  G +I +  L +LVP+      D  V  ++   ++  G++K D L L  L+ ++K
Sbjct: 516 LSQHVGGFIITEGRLDELVPVENATMVDRTVVCWDKDDLDSLGILKIDILALGMLSCVRK 575

Query: 585 SLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
           + D +A     K  L+ +P +D   Y +L    ++G+FQ+ES      L  M+P C  D+
Sbjct: 576 AFDLIAHHHGAKFSLATLPVEDPAVYDMLCRADSIGVFQVESRAQMNFLPRMRPRCFYDL 635

Query: 644 IALVSLYRPGPIDNIVVYNNRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
           +  V++ RPGPI   +V+   +    +  +      +  +L +T GV ++QEQ MQIA +
Sbjct: 636 VIQVAIVRPGPIQGDMVHPFIRRRNGEEQVEFPSDALGEVLSKTLGVPLFQEQAMQIAIV 695

Query: 702 LSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            +G+  SEAD LRRA+    K   + + + RF+ G ++NG     A   F  +  F  YG
Sbjct: 696 GAGFDPSEADRLRRALATFKKHGNVSEFRTRFLKGMAQNGYDTAFAERCFSQIEGFGSYG 755

Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
           F +SHAA++A++ Y +AW+K H+P  F  A +  +        +  +DAR+  + + P  
Sbjct: 756 FPESHAASFALLVYASAWIKCHHPGIFACALLNAQPMGFYAPAQIMRDAREHGVTVRPVC 815

Query: 821 VNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
           VN    D  +  +      +      +KG+    A  ++ A  +  + ++ D   R    
Sbjct: 816 VNASFWDNTMEPDGQGGLALRLGFRQVKGLAQEDAEWLVSARGNG-YGTVADLWRRA--- 871

Query: 876 KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            L + VL  L  A A    G  R   L     I+  A             +F+ +     
Sbjct: 872 GLGQAVLTRLAEADAFAELGLGRRDALWQARAIRGDA----------PLPLFSGDMDGEG 921

Query: 936 DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
                      +       +   +      HP+ + + +L
Sbjct: 922 GAEPPVVLPPMSLGEEVVEDFVAMRLSLRAHPVALLRHVL 961


>gi|149915320|ref|ZP_01903847.1| DNA polymerase III, alpha subunit [Roseobacter sp. AzwK-3b]
 gi|149810609|gb|EDM70450.1| DNA polymerase III, alpha subunit [Roseobacter sp. AzwK-3b]
          Length = 962

 Score =  473 bits (1216), Expect = e-130,   Method: Composition-based stats.
 Identities = 246/1010 (24%), Positives = 418/1010 (41%), Gaps = 100/1010 (9%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F  L + S+++ L GA      + + A    PAIAI D N++   +     A        
Sbjct: 2   FAELSITSNFTFLTGASHPEEYVQRAACLGLPAIAIADDNSVAGIVRAHAAARE------ 55

Query: 71  IGCQLD----IDMQDNLKMTNQGKTPFPTVPS--------------------IVLLVSTA 106
           IG Q+     ++ +D        +      P                     +  L    
Sbjct: 56  IGRQVAERQALEARDGPIGPPAPEGLAADGPDWANIPCLIPAARLCLTEGVTLTALPQDR 115

Query: 107 EGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
            G+  L  L++      + K +  + L  + + G EGL +L                   
Sbjct: 116 TGWASLCRLLTTGRRRTE-KGACHLTLDDVLQ-GAEGLELLLHPP-----------GPAQ 162

Query: 167 AEKRLLTFKKLFGDRLYVNLQRH-------RGYDRYRESQVVQLAYTHELPLVATNNSLF 219
           A   L   ++L G    +  Q H        G D  R  ++ +LA    LP +A+     
Sbjct: 163 AADWLAQARRLVGR---LGAQMHLLMAPEYDGQDSTRFDRLAKLADRLGLPALASACPRM 219

Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
                 +  DV+ A+     V +  R      +  L++ +EM+ +F+    A+    E+A
Sbjct: 220 HHGRRRKLADVMTAIRKGVRVDELGRAALANAECRLRSEAEMLRLFAGHEAAVHQAGEVA 279

Query: 279 RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
            R +F L        R+         +     LR  A+ GL+ R   GA      +   R
Sbjct: 280 ARLAFSLDE-----LRYEYPSEVAHGETPAERLRRLALKGLDWRYPHGA------SDKVR 328

Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             L+ EL +I ++ +  YFL V D + +A+  +I    GRGS A SV  Y L +T + P 
Sbjct: 329 AMLEHELTLIGKLGYEPYFLTVHDVVAFARSRDIL-CQGRGSAANSVVCYCLGVTSVSPE 387

Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
             +++FERF++  R   PD D+DF  +RR+EVI+++  +YG +R     T    + K A+
Sbjct: 388 IGTMVFERFVSEARNEPPDIDVDFEHERREEVIQWIYERYGRQRAGLCATVIHYRGKRAI 447

Query: 459 RDVGRALQMPYSQVDRLCKLIPNDPAHP----VSLQAIADDSRFREARLADPSVDRLLEI 514
           R+VGRA+ +    +  L   +    +        ++ I  D   R  R     VD +   
Sbjct: 448 REVGRAMGLSQDTISALSSQLWGFFSSGQVARDRIREIGLDPDDRRLRQTMELVDEI--- 504

Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
               EG  RH S H  G VI +  L +LVP+     ++  V  ++   I+  G++K D L
Sbjct: 505 ----EGFPRHLSQHVGGFVITEGRLDELVPIENASMAERTVICWDKDDIDTLGILKVDVL 560

Query: 575 GLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            L  LT ++K+ + LA+    +  L+ +P +D   Y +L    ++G+FQ+ES      L 
Sbjct: 561 SLGMLTCIRKAFELLARHHGQEHTLATLPPEDPRVYDMLCRADSVGVFQVESRAQMNFLP 620

Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            M+P C  D++  V++ RPGPI   +V+    R+NG+E++      +  +L +T GV ++
Sbjct: 621 RMRPRCFYDLVIEVAIIRPGPIQGDMVHPYIRRRNGEEQVSFPSDALGAVLGKTLGVPLF 680

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIF 750
           QEQ MQIA   +G+S  EAD LRR++    K   + + ++RF+ G  +NG     A   F
Sbjct: 681 QEQAMQIAITGAGFSPDEADRLRRSLATFKKHGSVSEFRDRFLRGMKRNGYDMDFAERCF 740

Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
             +  F  YGF +SHAA++A++ Y +AW+K H+P  F  A +  +        +  +DAR
Sbjct: 741 SQIEGFGSYGFPESHAASFALLVYASAWIKCHHPGIFACALLNSQPMGFYAPAQIVRDAR 800

Query: 811 QFNIQIMPPSVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
           +  + + P  +N    D  +  +      +      +KG+    A  I  A  +  +  +
Sbjct: 801 EHGVTVRPVCINASYWDNVMEPDGNGGLALRLGFRQVKGLAEEDAAWITGARGNG-YLQV 859

Query: 866 EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
            D   R     +    +  L  A A    G SR   L     +            ++   
Sbjct: 860 GDVWRRA---GVPPATVTRLAEADAFAGLGLSRRDALWEAKAL----------AGDRPLP 906

Query: 926 IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
           +FA +                        +   +      HPL + +  L
Sbjct: 907 LFAGDMDGEGLTEPAAHLPAMTLGEEVVEDYVAMRLSLKAHPLALLRSAL 956


>gi|254507615|ref|ZP_05119748.1| putative DNA polymerase III alpha subunit subfamily [Vibrio
            parahaemolyticus 16]
 gi|219549502|gb|EED26494.1| putative DNA polymerase III alpha subunit subfamily [Vibrio
            parahaemolyticus 16]
          Length = 1023

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 251/1035 (24%), Positives = 419/1035 (40%), Gaps = 82/1035 (7%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI--Q 68
            +  L   +++S L GA     ++ +    +  ++AITD  ++   +   +      +  +
Sbjct: 3    YAELFCQTNFSFLTGASHAEELILQADFLRYHSLAITDECSVAGVVRAYKAIETHQLNTR 62

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG    ++ +                  +VLL  T + Y  L  +++      + K  
Sbjct: 63   LIIGSMFWLNQE----------------CQVVLLCPTHDAYAELCRIITNARRRSE-KGQ 105

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             ++    L  +    +I L                     K      +    RL++ +QR
Sbjct: 106  YQLSEWDLMTVKHCLVIWLPSHQDSDF-------------KWGQWLTQHHQHRLWIGIQR 152

Query: 189  HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            H   D         +LA    LP+ A    L  +        VL A+     V       
Sbjct: 153  HLSSDEKQYLQHCERLAQELALPITACGGVLMHTATRLPLQHVLTAIQLGKSVDNIGSHL 212

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
            +T         E +S             E +   +   +     L      E     +  
Sbjct: 213  LTNTERTLRSKEKLSKLFKPEWL-----EESVHIAKRCKFSMGELQYQYPSELVPNGESP 267

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR     G ++R  +G  A         + +D EL++I  + +  YFL + D + +A
Sbjct: 268  NSYLRKLVEHGKKLRFPEGVPAH------VEETIDKELDLIEELNYPFYFLTINDIVMFA 321

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            K+N I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +RR
Sbjct: 322  KRNRILY-QGRGSAANSVVCYCLEITSVDPRQISVLFERFISKERNEPPDIDVDFEHERR 380

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+Y+  KYG ER A   T  + + K+A+RDVG+AL +  SQ+D   K +       +
Sbjct: 381  EEVIQYIYQKYGRERAALAATVITYRFKSAVRDVGKALGIEESQLDYFIKNVNRRD-RSL 439

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
              QA   +   +   L       L+          RH S H  G VI   PL QLVP+  
Sbjct: 440  GWQAQIVELGLQPGSLKGEQFIALVNEIMGF---PRHLSQHVGGFVIAAGPLHQLVPVEN 496

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---VDLSLIPFD 604
                D  V Q++   +E   L+K D L L  L+ ++K  D++ +   +   +       D
Sbjct: 497  ASMPDRTVIQWDKDDLESLKLLKVDVLSLGMLSAIRKCFDWVKKLHNQELSIAEITRRQD 556

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662
            D   Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI   +V+   
Sbjct: 557  DPNVYRMIQQADTVGVFQIESRAQMSMLPRLKPACYYDLVIQIAIVRPGPIQGDMVHPFL 616

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R++G E I      ++ +L  T GV I+QEQV+++A + +G+S  EAD LRRAM    K
Sbjct: 617  KRRDGIEPITYPSKEVEEVLSRTMGVPIFQEQVIKLAMVAAGFSGGEADSLRRAMAAWKK 676

Query: 723  EEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
                 K K + I G    G     A  IF+ +  F +YGF +SH+A++AV++Y +AW+K 
Sbjct: 677  NGDLIKFKTKLIEGMLSRGYELEFAERIFDQILGFGEYGFPESHSASFAVLAYCSAWLKH 736

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNRIYY 837
            +YP  F  + +           +  QDA++ N+ I+P  VN    D +V        I  
Sbjct: 737  YYPEAFYTSILNSLPMGFYSASQLVQDAKRHNVMILPVCVNQSLHDHQVVKCGDKFAIRL 796

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L  IKG    ++  +++A   + F+             LNRR +E L  A A+     +
Sbjct: 797  GLRQIKGFSIESSHQLIKARGKQGFNHPNQL----KHIGLNRRDIELLASANAMQSIANN 852

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            R Q   S+ +                  +F   + T S  +        +       +  
Sbjct: 853  RYQTRWSMMDSLSD------------LPLFKDIQETDSMPVAAP-----SEIQTLLEDYA 895

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
              G     HP+ +              E +     + + +  +V  KQ   T  G  + +
Sbjct: 896  ATGLSLQQHPIRLLDKAGMLGRFTRMSELMTRPHQSLVTVVGVVTGKQAPGTAAG--VTF 953

Query: 1018 VTFSEPAKEYEANFF 1032
             T  +         +
Sbjct: 954  FTLEDDTGNINVVVW 968


>gi|116627933|ref|YP_820552.1| DNA polymerase III DnaE [Streptococcus thermophilus LMD-9]
 gi|116101210|gb|ABJ66356.1| DNA polymerase III catalytic subunit, DnaE type [Streptococcus
            thermophilus LMD-9]
          Length = 1036

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 280/1025 (27%), Positives = 478/1025 (46%), Gaps = 100/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S YS ++  + LN  + +       +I + D +NL++A  F+Q A   G++P+
Sbjct: 2    FAQLDTKSVYSFMDSVVDLNTYVKRAKELGYQSIGLMDRDNLYAAYHFAQLAIRNGLRPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + ++  +                    LL    +GY+ L++L +   L    ++   
Sbjct: 62   IGTEANLFYEGRKIPFR-------------LLAKNNQGYKNLMKLATE--LSSGQRE--- 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               ++  +   + + ++          +                    G  +++ +   R
Sbjct: 104  --FTYFSDYLND-IALILPSEDWEPGMSL-------------------GSEVFIGV---R 138

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D              + P+V  +   +    D      L A++ +  +S+     +  
Sbjct: 139  PEDA---------GKEFDYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEVSICPMNQ 189

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              +            ++ EA     E     + ++   +      ++    + +    ++
Sbjct: 190  LLF---------SAKEMEEAYSKLPEALNNLNQLVSDVSYQFDTNLKLPRFNREMPAVDQ 240

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  A +G          +K      Y++RLD EL++I +M F  YFLIV D +++ +  
Sbjct: 241  LRQLAQSG--------LDSKALREPAYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSR 292

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ AY L IT IDP++  LLFERFLN +R SMPD DID     R E 
Sbjct: 293  GYYMGMGRGSAAGSLVAYVLDITGIDPVKNDLLFERFLNEERYSMPDIDIDLPDIYRSEF 352

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV+++YG +  AQI+TF +  AK A+RDV +       ++ +L K I           
Sbjct: 353  LHYVRDRYGSKHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKISF---RDTLTT 409

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+         R  EI++ +EG  R  S HAAGIV+ D  L+  +P+     
Sbjct: 410  VYEKNMSFRQLINQRQEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTNHIPL--KAG 467

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFLAQRGVKVDLSLIPFDDHETY 609
             D+ VTQ++   +E  GL+K DFLGL+ LT +QK       ++G+ +D+  I  +D +T 
Sbjct: 468  EDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGIAIDIKSIDLEDSQTL 527

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E +G    L+ ++P   E+++A  SL RPG  D    +  RK GKE
Sbjct: 528  ALFASGKTKGIFQFEQAGAINLLKRIKPAKFEEVVATTSLNRPGASDYTDNFVARKYGKE 587

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  I P++ P+L+ T G+++YQEQVMQIAQ+ +G+SL +AD+LRRAM KK   EM K  
Sbjct: 588  KVDLIDPVVAPILEPTYGIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSKKDANEMSKMS 647

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E+F+ G+ + G    +A  +F ++ KFA YGFNKSHA AY+ +++Q A+ KTHYP  F  
Sbjct: 648  EQFMEGSRQLGRDPQVAKRLFSMITKFAGYGFNKSHAYAYSSLAFQLAYFKTHYPQIFYD 707

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +            + +DA +    +    +N      K+ D +I   L  IKG+    
Sbjct: 708  VMLN------YSSSDYIRDAIENGFSLASLDINRIPYMDKISDGKIVLGLKTIKGLPRDF 761

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            A  I+E    +  + S+EDF +R+ SK     +L  L+  G  D F  +R +++ +L N+
Sbjct: 762  ALWIIEDRQQNGKYISIEDFLTRIPSKYQKVDILTPLIQIGLFDRFEPNRRKIIGNLSNL 821

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +   +         ++FA    ++ +          + + R+  EQ +LG   S HPL
Sbjct: 822  FTFVNEL--------GSLFAESSYSWVEY------EDYSQTERYSIEQDLLGVGLSTHPL 867

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                 + +KM  + Y+        +   +   + S +  +T+KG ++ +++  +   + +
Sbjct: 868  ----HLAQKMASRPYQPISELTLNSKATVLVQLESVRIIRTKKGDQMAFLSVFDGVNKLD 923

Query: 1029 ANFFP 1033
               FP
Sbjct: 924  VTLFP 928


>gi|269124207|ref|YP_003306784.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM
            12112]
 gi|268315533|gb|ACZ01907.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM
            12112]
          Length = 1056

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 275/1023 (26%), Positives = 490/1023 (47%), Gaps = 85/1023 (8%)

Query: 15   QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            ++H+ YSLLEG  S+   + K   +    +AITD   +F+A++F     +  I PIIG +
Sbjct: 4    RIHTEYSLLEGVGSVEEYVQKARENNIKELAITDFG-MFAAIKFYNSCKSNNIVPIIGIE 62

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            + +          +G      + ++ LL    +G + + +L +  +  +       I L 
Sbjct: 63   IHL----------KGFLDQENIYTLTLLAKNEKGVKNIYKLSTISHERNF------ILLD 106

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR 194
             L E   + + +L+GG +  +      N  +  +K +    +     + + +      + 
Sbjct: 107  DLLE-HGKDIYILSGGVNSELVSYVLKNDYKKVKKLMEIMLEKL--DIILEIPMFEMLEY 163

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
             R     +L     +  +  N   +L +ED     +  A+  +  +              
Sbjct: 164  QRL-MFDKLVDELNVKSIEVNEIYYLEKEDKILQKIFAAIKENRTLKT------------ 210

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
                       D    + N  +        + +                   E+  + N 
Sbjct: 211  ----VQNEKKQDGLHFIINNQDKREDILNDIDIVLDNKNVEFPLVKLPDGLSEKEYIINI 266

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
                +  +            ++ + R+++ELNVI +M +  YFLIV DFI++AK+N+I +
Sbjct: 267  LEKNIGKKYPN-------ITKEIQDRINYELNVIDKMGYIKYFLIVHDFIKYAKENDIFI 319

Query: 375  GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
            GPGRGS AGS+ +Y L IT++DP+++ L+FERFLNP+R+SMPD D+D  Q++R ++I Y+
Sbjct: 320  GPGRGSAAGSIISYLLGITELDPIKYGLIFERFLNPERISMPDIDVDIEQEKRIDLIEYI 379

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            +  YG   V+QIITF + +   AL+D+ R  ++P   + +L                   
Sbjct: 380  KRTYGSRNVSQIITFSTFKPTLALKDLARVFEIPEKSIRKLLDES--------------K 425

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
            +    E   +   V  L++ ++++EG  +++STHAAG++I    + + +P+  D  +   
Sbjct: 426  EKSLDELSDSKEMVKSLIDYAKRIEGKIKNSSTHAAGVIITKEDMRENLPLIYDSYTKDY 485

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT 614
              QF    +E  G +K D LGLK L +++  +  + +     +L     +  E ++LL T
Sbjct: 486  QIQFEANVLESLGYLKMDLLGLKNLNVVKNVIKKVNEDIDIYNL----PEYEEAFNLLNT 541

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID---NIVVYNNRKNGKEKI 671
              T+GIFQ ES G+ Q    ++   +EDI  L++LYRPGP++      +   + N   KI
Sbjct: 542  GNTIGIFQCESRGITQLAMNLKIHSLEDIALLLALYRPGPLESGLIPSLIVMKNNKNIKI 601

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
             ++ P+I+ +L  T GV++YQEQVM+IAQ +SGYSL++AD LR+A+GKK  E + + ++ 
Sbjct: 602  KTVDPMIEDILLPTYGVLVYQEQVMEIAQKISGYSLAKADELRKAIGKKNVELLKQNRKD 661

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            FI  A      K  A  I++L+  F +YGFNK+HA +YA I+YQTA++K  YP EF A+ 
Sbjct: 662  FIENAII---PKQRAEKIYDLIDNFGNYGFNKAHAISYANITYQTAYLKAKYPREFFASL 718

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
            +T E+   +K+     +  + NI++ PPS+N    +F++ +N I   L+A+K +   TAR
Sbjct: 719  LTTELKVEKKLVNSYAEMLKRNIEMYPPSINRSTAEFEIEENGIRIPLSALKEMSEKTAR 778

Query: 852  HIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
             ++E    +  F  + DF +R   + LN+  LE L+++G  D F   R +L+ +L +I K
Sbjct: 779  EVVEEREKNGNFKDIFDFITRC--RFLNKSNLEGLIYSGCFDEFNIGRKKLIVNLQDIIK 836

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            +     K++T+ + ++F +      +   +E     +     + E+  +          +
Sbjct: 837  WIDKRNKSQTDIYSSLFLNMNMEIEEYKWMET-DEMSDDEIIKLEKEYVKLSMRN--TQI 893

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             K  L    I    E           +   + S++ K T+K   +  V         E  
Sbjct: 894  LKSEL-VYNIFKSNE----------YVIGYIESEKSKVTKKNELMNIVNILSIEGSKEYL 942

Query: 1031 FFP 1033
             FP
Sbjct: 943  IFP 945


>gi|260432082|ref|ZP_05786053.1| error-prone DNA polymerase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415910|gb|EEX09169.1| error-prone DNA polymerase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 984

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 238/996 (23%), Positives = 417/996 (41%), Gaps = 68/996 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA--AGIQ 68
           +  L + S+++ L GA      +++      PAIAI D N++   +    +A      ++
Sbjct: 2   YAELSITSNFTFLTGASHPEEYMERAVTLGLPAIAIADDNSVAGIVRAHTQAREIARKVR 61

Query: 69  ----------PIIG--CQLDIDMQDNL------KMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
                     PI G  C   I    +       ++    +  F   P +  L    +G+ 
Sbjct: 62  ERRAWEEHNTPI-GPPCPDHIPKPPSFPVHAVPRLIPAARLIFTDAPPVTALPLNRQGWA 120

Query: 111 RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR 170
            L  L+S   L    K    + LS L E  ++GL +L    +G          +     +
Sbjct: 121 SLCRLLSTGRLRAA-KGDCILHLSDLLEF-SDGLHLLLWPQAGRP-----TGGASGWRTQ 173

Query: 171 LLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                + F  R+++ +  R+ G D      +   ++   LP +A+   +          D
Sbjct: 174 AQQLTRRFAGRMHLLMHPRYDGADAAFFQVLETESHHLGLPTIASAAPMMHHGSRRRLAD 233

Query: 230 VLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
           VL A+     V    R      +  L++ +EM+ IF     A+     ++ + +F L   
Sbjct: 234 VLTAIRLRRKVDDLGRHALANGEQRLRSEAEMLRIFKGHEGAVARAYALSEQLTFSLDE- 292

Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                R+         +     L   A  GL+ R   GA       +  +  L  EL +I
Sbjct: 293 ----LRYEYPSEVSGTETPAQRLHRLAHEGLKWRYPAGA------PEKVKAMLAHELTLI 342

Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
            ++K+  YFL V D +Q+A+   I    GRGS A SV  Y L +T + P   +++FERF+
Sbjct: 343 GKLKYEPYFLTVHDIVQFARSRGIL-CQGRGSAANSVVCYCLGVTSVSPEMGTMVFERFV 401

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
           +  R   PD D+DF  +RR+EVI+++  +YG  R     T    + K A+R+VGRA+ + 
Sbjct: 402 SEARDEPPDIDVDFEHERREEVIQHIYERYGRHRAGLCATVIHYRGKRAIREVGRAMGLT 461

Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
              +  L   +    +          +               L+    ++ G  RH S H
Sbjct: 462 EDTISALSSQLWGFFSASGLEAERMREIGLDPEDHRLKQTLTLVH---QINGFPRHLSQH 518

Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
             G +I +  L +LVP+      D  V  ++   I+  G++K D L L  LT ++K+ D 
Sbjct: 519 VGGFIITEGRLDELVPIENATMEDRTVICWDKDDIDTLGILKVDVLSLGMLTCIRKAFDL 578

Query: 589 LAQRGVK-VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
           +AQ       L+ +P +D   Y +L    ++G+FQ+ES      L  M+P    D++  V
Sbjct: 579 IAQHHQTSYTLATLPPEDPAVYDMLCRADSVGVFQVESRAQMNFLPRMRPRNFYDLVIEV 638

Query: 648 SLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
           ++ RPGPI   +V+    R+NG+E++      +  +L +T GV ++QEQ MQIA + +G+
Sbjct: 639 AIIRPGPIQGDMVHPYIRRRNGEEEVSFPSDALGEVLGKTLGVPLFQEQAMQIAIVGAGF 698

Query: 706 SLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
           +  +AD LRR++    K   + + +  F+ G  +NG     A   F  +  F  YGF +S
Sbjct: 699 TPEQADRLRRSLATFKKHGSVSEFRALFLRGMQRNGYDAEFAERCFSQIEGFGSYGFPES 758

Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
           HAA++A++ Y +AW+K H+P  F  A +  +        +  +DAR+  +Q+ P  +N  
Sbjct: 759 HAASFALLVYASAWIKCHHPGIFACALLNSQPMGFYAPAQIVRDAREHGVQVRPVCINAS 818

Query: 825 CVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
             D  +  +      +      IKG+    A  +  A  +  +  ++D   R     L  
Sbjct: 819 FWDNVMEPDGHGGLALRLGFRQIKGLSEEDASWLTAARGNG-YHQVDDVWRRA---GLGP 874

Query: 880 RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            V+E L  A A    G +R + L     I           T +   +FA +    +    
Sbjct: 875 SVIERLAEADAFAACGLTRREALWQAKAI----------ATARPLPLFAQDLEGEALDEP 924

Query: 940 LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
                  +   +   +          HP+ + + +L
Sbjct: 925 AAHLPRMSLGEQVVEDYVATRLSLRAHPVALLRHLL 960


>gi|269966539|ref|ZP_06180622.1| putative DNA polymerase III alpha chain [Vibrio alginolyticus 40B]
 gi|269828883|gb|EEZ83134.1| putative DNA polymerase III alpha chain [Vibrio alginolyticus 40B]
          Length = 1024

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 236/1037 (22%), Positives = 427/1037 (41%), Gaps = 83/1037 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA--CAAGI 67
            S+  L   S++S L GA     ++ + A  +  A+AITD  ++   ++           I
Sbjct: 2    SYAELFCQSNFSFLTGASHAEELVLQAAFYRYQALAITDECSVAGIVKAHATIEQHKLDI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+G    ++ +                  IVLL    + Y  L  +++      + K 
Sbjct: 62   KQIVGSMFWLNDE----------------CQIVLLCPCRKAYAELCRIITNARRRSE-KG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            + ++    L  +               +      +             +   +RL+V +Q
Sbjct: 105  NYQLFEWDLMSVRH--------CLVLWLPTHQESDHY-----WGRWLNQHHANRLWVAIQ 151

Query: 188  RHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH    D    +   QLA+  +LP+ A    L    E      VL A+ H   V +    
Sbjct: 152  RHLSNNDTEYIAHCEQLAHEFQLPITACGGVLMHDVERLPLQHVLTAIKHGCSVDKLGFD 211

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R++         + +              E +   + + +     L      E       
Sbjct: 212  RISNTERALRPFKKLIRIYKPEWL-----EESTYIADLCEFKLSDLKYEYPTELIPDGYT 266

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++ LR     G ++R  +G  A      +  Q ++ EL +I  +K+  YFL + D + +
Sbjct: 267  PDSYLRMLVERGKKLRFPEGVPA------EVNQTIENELALIQELKYHYYFLTIHDIVMF 320

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+  I    GRGS A SV  Y L IT +DP + ++LFERF++ +R   PD D+DF  +R
Sbjct: 321  AKQQGILY-QGRGSAANSVVCYCLEITAVDPRQIAVLFERFISKERKEPPDIDVDFEHER 379

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG ER A   T  S + K+A+R+VG+AL +  +Q+D   K +       
Sbjct: 380  REEVIQYIYKKYGRERAALAATVISYRFKSAVREVGKALGIEETQLDFFIKNVNRRDRSQ 439

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                 I +       +       + +++  ++ G  RH S H  G VI   PL +LVP+ 
Sbjct: 440  GWQAQIIE----LGLQPESLKGQQFIQLVNEIIGFPRHLSQHVGGFVISSGPLYELVPVE 495

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---VDLSLIPF 603
                 D  + Q++   +E   L+K D L L  L  ++K    + +   +   +       
Sbjct: 496  NASMEDRTIIQWDKDDLESLKLLKVDVLALGMLNAIKKCFQLVEKHHQRSLSISEITRRQ 555

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662
            DD   Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI   +V+  
Sbjct: 556  DDPHVYRMIQKADTIGVFQIESRAQMSMLPRLKPACYYDLVIQIAIVRPGPIQGDMVHPF 615

Query: 663  -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R++ KE +      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM    
Sbjct: 616  LKRRDHKEPVNYPSEEVKSVLERTMGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMASWK 675

Query: 722  KEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            K     K + + I+G  + G     A  IF+ +  F +YGF +SH+A++AV++Y +AW+K
Sbjct: 676  KNGDLAKFRPKLINGMQERGYDLAFAERIFDQICGFGEYGFPESHSASFAVLAYCSAWLK 735

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRI 835
             +YP EF  A +  +        +  QDAR+  ++++P  VN       +     G   +
Sbjct: 736  YYYPAEFYTALLNSQPMGFYSPSQLVQDARRHGVEVLPVCVNHSKYQHHLVSRPNGRLGV 795

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                  +KG    +A+ ++E      + S+++    V     +R  +E L  A A     
Sbjct: 796  QLGFRLVKGFNAESAQRLIERKPLNGYRSIQE----VKQILRSRSDIELLASANAFQALS 851

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R     +  +                  +F        ++  +   +  +       +
Sbjct: 852  GNRYNARWAAMDSLSD------------LPLF-----HKVEEPNVSYQTQPSEYENLIED 894

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G   S HP+ + +   +        +       + + +  +V  +Q   T  G  +
Sbjct: 895  YASTGLSLSRHPIKLLEETGKLPHFTRMRQLTEKPHKSLVTVVGVVTGRQSPGTAAG--V 952

Query: 1016 GWVTFSEPAKEYEANFF 1032
             + T  +         +
Sbjct: 953  TFFTLEDDTGNINVVVW 969


>gi|126730885|ref|ZP_01746694.1| DNA polymerase III, alpha subunit [Sagittula stellata E-37]
 gi|126708601|gb|EBA07658.1| DNA polymerase III, alpha subunit [Sagittula stellata E-37]
          Length = 1041

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 244/1018 (23%), Positives = 411/1018 (40%), Gaps = 84/1018 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA--AGIQ 68
           F  L + S++S L GA      +++ A      IAI D N++   +    +A      I+
Sbjct: 2   FAELCITSNFSFLTGASHPEEYVERAAFLGIETIAICDENSVAGIVRAHSEAKEIAYQIR 61

Query: 69  ---PIIGCQLDIDMQDNLKMTNQGKTPFPTVPS--------------IVLLVSTAEGYQR 111
               II     I       +    + P  TVP               + +L ++   +  
Sbjct: 62  EREEIIARDGLIGPPMPPGLPAPPRAPVDTVPRVIPGARLVFREGLQMTVLATSRRSWAD 121

Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
           L  ++S       GK S  I L+ L E    G   +      P            AE+  
Sbjct: 122 LCRIISLGRRR-AGKGSCDISLADLPE-DMGGWEAILHPPRVPTAPGGAGGWLSRAEQVS 179

Query: 172 LTFKK-----------------------LFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTH 207
             F +                       L   RL++ L  R+ G D  R   + +LA   
Sbjct: 180 RRFARTSAVPSDGMDANGAPGVPPDRDALSPGRLHLALAPRYDGQDARRFDALARLAERL 239

Query: 208 ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSD 266
            +  VAT   +          DVL A+     V +  R      +  L++  EM  +   
Sbjct: 240 GIDTVATAQPMMHHGRRRRLADVLTAIRTRQRVDKLGRHALANAEQRLRSGDEMRRLLGP 299

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
              A+    E+ARRC+F +        R+         +     L   A  GL  R  QG
Sbjct: 300 HAAAVTRAGELARRCTFDI-----ASLRYEYPSEITGTETATQRLSRLAHEGLAWRYPQG 354

Query: 327 AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
           A          R +LD EL +IA++K+  YFL V D + +A++  I    GRGS A S+T
Sbjct: 355 A------PDKARAQLDHELALIAKLKYEPYFLTVRDIVAFARERGIL-CQGRGSAANSIT 407

Query: 387 AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
            Y L +T + P   +++FERF++  R   PD D+DF  +RR+EVI+++  +YG  R    
Sbjct: 408 CYCLGVTSVSPEIGTMVFERFVSEARDEPPDIDVDFEHERREEVIQHIYERYGRHRAGIC 467

Query: 447 ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
            T    + K A+R+VGRA+ +    +  L   +    +     +    +           
Sbjct: 468 ATVIHYRGKRAIREVGRAMGLSEDTLGALSSQLWGFFSTSGMEEQRMREIGLDPTDRRLQ 527

Query: 507 SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
               L+          RH S H  G ++ +  L +LVP+         V  ++   I+  
Sbjct: 528 LTMELIHEIIGF---PRHLSQHVGGFIVTEGRLDELVPIENASMEGRTVICWDKDDIDAL 584

Query: 567 GLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
           G++K D L L  LT ++K+ D L    G    L+ +P +D E Y +L    +LG+FQ+ES
Sbjct: 585 GILKIDVLSLGMLTCIRKAFDLLKLHHGTTHTLATLPPEDPEVYDMLCRADSLGVFQVES 644

Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK--IVSIHPLIDPMLK 683
                 L  M+P    D++  V++ RPGPI   +V+   +    +  +      +  +L 
Sbjct: 645 RAQMNFLPRMRPRNFYDLVIEVAIIRPGPIQGDMVHPYIRRRNGEERVSFPSDALGEVLG 704

Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGIS 742
           +T GV ++QEQ MQIA   + ++ +EAD LRR++    K   + + + RF+ G   NG  
Sbjct: 705 KTLGVPLFQEQAMQIAITGANFTPTEADRLRRSLATFKKHGSVSEFRTRFMKGMRDNGYD 764

Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
           +  A   F  +  F  YGF +SHAA++A++ Y +AW+K H+P  F  A +  +       
Sbjct: 765 EAFADRCFSQIEGFGSYGFPESHAASFALLVYASAWLKCHHPAVFACALLNSQPMGFYAP 824

Query: 803 KKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEAS 857
            +  +DAR+  + + P  +N    D  +  +      +      IKG+    A+ I  A 
Sbjct: 825 AQIVRDAREHGVAVRPIDINASYWDNALEPDGRGGLALRLGFRQIKGLSEDDAQWIACAR 884

Query: 858 ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
            +  + ++ D   R     L+ ++L  L  A A    G +R + L     + +       
Sbjct: 885 GNG-YRTVRDVWRRA---GLSPKMLGRLSEADAFASIGLNRREALWEAKALTR------- 933

Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
                   +FA +    + +  +              +   +      HP+ + + IL
Sbjct: 934 ---GPDLPLFARDIEGEAIREVMADLPRMTEGEEVVEDYVAMRLSLRAHPVALLRHIL 988


>gi|254230313|ref|ZP_04923701.1| DNA polymerase III, alpha subunit subfamily, putative [Vibrio sp.
            Ex25]
 gi|262393787|ref|YP_003285641.1| DNA polymerase III subunit alpha [Vibrio sp. Ex25]
 gi|151937173|gb|EDN56043.1| DNA polymerase III, alpha subunit subfamily, putative [Vibrio sp.
            Ex25]
 gi|262337381|gb|ACY51176.1| DNA polymerase III alpha subunit [Vibrio sp. Ex25]
          Length = 1024

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 238/1037 (22%), Positives = 429/1037 (41%), Gaps = 83/1037 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA--CAAGI 67
            S+  L   S++S L GA     ++ + A  +  A+AITD  ++   ++           I
Sbjct: 2    SYAELFCQSNFSFLTGASHAEELVLQAAFYRYQALAITDECSVAGVVKAHATIEQHKLDI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+G    ++ +                  IVLL    + Y  L  +++      + K 
Sbjct: 62   KQIVGSMFWLNDE----------------CQIVLLCPCRKAYAELCRIITNARRRSE-KG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            + ++   W        L+ +       +      +             +   +RL+V +Q
Sbjct: 105  NYQL-FEW-------DLMSIRHCLVLWLPTHQESDHY-----WGRWLNQHHANRLWVAIQ 151

Query: 188  RHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH    D    +   QLA+  +LP+ A    L    E      VL A+ H   V +    
Sbjct: 152  RHLSNNDTEYIAHCEQLAHEFQLPITACGGVLMHDVERLPLQHVLTAIKHRCSVDKLGFD 211

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R++         + +              E +   + + +     L      E       
Sbjct: 212  RISNTERALRPFKKLVRIYKPEWL-----EESTYIADLCEFKLSDLKYEYPTELIPDGYT 266

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++ LR     G ++R  +G  A      +  Q ++ EL +I  +K+  YFL + D + +
Sbjct: 267  PDSYLRMLVERGKKLRFPEGVPA------EVNQTIENELALIQELKYHYYFLTIHDIVMF 320

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+  I    GRGS A SV  Y L IT +DP + ++LFERF++ +R   PD D+DF  +R
Sbjct: 321  AKQQGILY-QGRGSAANSVVCYCLEITAVDPRQIAVLFERFISKERKEPPDIDVDFEHER 379

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG ER A   T  S + K+A+R+VG+AL +  +Q+D   K +       
Sbjct: 380  REEVIQYIYKKYGRERAALSATVISYRFKSAVREVGKALGIEETQLDFFIKNVNR---RD 436

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             S    A          +      + ++  ++ G  RH S H  G VI   PL +LVP+ 
Sbjct: 437  RSQGWQAQVIELGLQPESLKGQQFI-QLVNEIIGFPRHLSQHVGGFVISSGPLYELVPVE 495

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---VDLSLIPF 603
                 D  + Q++   +E   L+K D L L  L  ++K    + +   +   +       
Sbjct: 496  NASMEDRTIIQWDKDDLESLKLLKVDVLALGMLNAIRKCFQLVEKHHQRSLSISEITRRQ 555

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662
            DD   Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI   +V+  
Sbjct: 556  DDPHVYGMIQKADTIGVFQIESRAQMSMLPRLKPACYYDLVIQIAIVRPGPIQGDMVHPF 615

Query: 663  -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R++ KE +      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM    
Sbjct: 616  LKRRDQKEPVSYPSEEVKSVLERTMGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMASWK 675

Query: 722  KEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            K     K + + I+G  + G     A  IF+ +  F +YGF +SH+A++AV++Y +AW+K
Sbjct: 676  KNGDLAKFRPKLINGMQERGYDLAFAERIFDQICGFGEYGFPESHSASFAVLAYCSAWLK 735

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRI 835
             +YP EF  A +  +        +  QDAR+  ++++P  VN       +     G   +
Sbjct: 736  YYYPAEFYTALLNSQPMGFYSPSQLVQDARRHGVEVLPVCVNHSKYQHHLVSRPNGRLGV 795

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                  +KG    +A+ ++E      + S+++    V     +R  +E L  A A     
Sbjct: 796  QLGFRLVKGFNAESAQRLIERKPLNGYRSIQE----VKQILRSRSDIELLASANAFQALS 851

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R     +  +                  +F        ++ ++   +  +       +
Sbjct: 852  GNRYNARWAAMDSLSD------------LPLF-----HKVEEPSVSYQTQPSEYENLIED 894

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G   S HP+ + +   +        +       + + +  +V  +Q   T  G  +
Sbjct: 895  YASTGLSLSRHPIKLLEETGKLPHFTRMRQLAEKPHRSLVTVVGVVTGRQSPGTAAG--V 952

Query: 1016 GWVTFSEPAKEYEANFF 1032
             + T  +         +
Sbjct: 953  TFFTLEDDTGNINVVVW 969


>gi|91228566|ref|ZP_01262486.1| putative DNA polymerase III alpha chain [Vibrio alginolyticus 12G01]
 gi|91187890|gb|EAS74202.1| putative DNA polymerase III alpha chain [Vibrio alginolyticus 12G01]
          Length = 1024

 Score =  471 bits (1213), Expect = e-130,   Method: Composition-based stats.
 Identities = 235/1037 (22%), Positives = 426/1037 (41%), Gaps = 83/1037 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA--CAAGI 67
            S+  L   S++S L GA     ++ + A  +  A+AITD  ++   ++           I
Sbjct: 2    SYAELFCQSNFSFLTGASHAEELVLQAAFYRYQALAITDECSVAGVVKAHATIEQHKLDI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+G    ++ +                  IVLL    + Y  L  +++      + K 
Sbjct: 62   KQIVGSMFWLNDE----------------CQIVLLCPCRKAYAELCRIITNARRRSE-KG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            + ++    L  +               +      +             +   +RL+V +Q
Sbjct: 105  NYQLFEWDLMSVRH--------CLVLWLPTHQESDHY-----WGRWLNQHHANRLWVAIQ 151

Query: 188  RHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH    D    +   QLA+  +LP+ A    L    E      VL A+ H   V +    
Sbjct: 152  RHLSNNDTEYIAHCEQLAHEFQLPITACGGVLMHDVERLPLQHVLTAIKHGCSVDKLGFG 211

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R++         + +              E +   + + +     L      E       
Sbjct: 212  RISNTERALRPFKKLIRIYKPEWL-----EESTYIADLCEFKLSDLKYEYPTELIPDGYT 266

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++ LR     G  +R  +G  A      +  Q ++ EL +I  +K+  YFL + D + +
Sbjct: 267  PDSYLRMLVERGKRLRFPEGVPA------EVNQTIENELALIQELKYHYYFLTIHDIVMF 320

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+  I    GRGS A SV  Y L IT +DP + ++LFERF++ +R   PD D+DF  +R
Sbjct: 321  AKQQGILY-QGRGSAANSVVCYCLEITAVDPRQIAVLFERFISKERKEPPDIDVDFEHER 379

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG +R A   T  S + K+A+R+VG+AL +  +Q+D   K +       
Sbjct: 380  REEVIQYIYKKYGRKRAALAATVISYRFKSAVREVGKALGIEETQLDFFIKNVNRRDRSQ 439

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                 I +       +       + +++  ++ G  RH S H  G VI   PL +LVP+ 
Sbjct: 440  GWQAQIIE----LGLQPESLKGQQFIQLVNEIIGFPRHLSQHVGGFVISSGPLYELVPVE 495

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---VDLSLIPF 603
                 D  + Q++   +E   L+K D L L  L  ++K    + +   +   +       
Sbjct: 496  NASMEDRTIIQWDKDDLESLKLLKVDVLALGMLNAIKKCFQLVEKHHQRSLSISEITRRQ 555

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662
            DD   Y ++    T+G+FQ+ES      L  ++P C  D++  +++ RPGPI   +V+  
Sbjct: 556  DDPHVYRMIQKADTIGVFQIESRAQMSMLPRLKPACYYDLVIQIAIVRPGPIQGDMVHPF 615

Query: 663  -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R++ KE +      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM    
Sbjct: 616  LKRRDHKEPVSYPSEEVKSVLERTMGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMASWK 675

Query: 722  KEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            K     K + + I+G  + G     A  IF+ +  F +YGF +SH+A++AV++Y +AW+K
Sbjct: 676  KNGDLAKFRPKLINGMQERGYDLAFAERIFDQICGFGEYGFPESHSASFAVLAYCSAWLK 735

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNRI 835
             +YP EF  A +  +        +  QDAR+  ++++P  VN       +     G   +
Sbjct: 736  YYYPAEFYTALLNSQPMGFYSPSQLVQDARRHGVEVLPVCVNHSKYQHHLVSRPNGRLGV 795

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                  +KG    +A+ ++E      + S+++    V     +R  +E L  A A     
Sbjct: 796  QLGFRLVKGFNAESAQRLIERKPLNGYRSIQE----VKQILRSRSDIELLASANAFQALS 851

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R     +  +                  +F        ++  +   +  +       +
Sbjct: 852  GNRYNARWAAMDSLSD------------LPLF-----HKVEEPNVSYQTQPSEYENLIED 894

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G   S HP+ + +   +        +       + + +  +V  +Q   T  G  +
Sbjct: 895  YASTGLSLSRHPIKLLEETGKLPHFTRMRQLTEKPHKSLVTVVGVVTGRQSPGTAAG--V 952

Query: 1016 GWVTFSEPAKEYEANFF 1032
             + T  +         +
Sbjct: 953  TFFTLEDDTGNINVVVW 969


>gi|55821207|ref|YP_139649.1| DNA polymerase III DnaE [Streptococcus thermophilus LMG 18311]
 gi|55737192|gb|AAV60834.1| DNA polymeraDNA polymerase III alphase III alpha subunit
            [Streptococcus thermophilus LMG 18311]
          Length = 1036

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 281/1025 (27%), Positives = 478/1025 (46%), Gaps = 100/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S YS ++  + LN  + +       +I + D +NL++A  F+Q A   G++P+
Sbjct: 2    FAQLDTKSVYSFMDSVVDLNTYVKRAKELGYQSIGLMDRDNLYAAYHFAQLAIRNGLRPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + ++  +                    LL    +GY+ LI+L +   L    ++   
Sbjct: 62   IGTEANLFYEGRKIPFR-------------LLAKNNQGYKNLIKLATE--LSSGQRE--- 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               ++  +   + + ++          +                    G  +++ +   R
Sbjct: 104  --FTYFSDYLND-IALILPSEDWEPGMSL-------------------GSEVFIGV---R 138

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D              + P+V  +   +    D      L A++ +  +S+     +  
Sbjct: 139  PEDA---------GKEFDYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEVSICPMNQ 189

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              +            ++ EA     E     + ++   +      ++    + +    ++
Sbjct: 190  LLF---------SAKEMEEAYSKLPEALNNLNQLVSDVSYQFDTNLKLPRFNREMPAVDQ 240

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  A +G          +K      Y++RLD EL++I +M F  YFLIV D +++ +  
Sbjct: 241  LRQLAQSG--------LDSKALREPAYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSR 292

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ AY L IT IDP++  LLFERFLN +R SMPD DID     R E 
Sbjct: 293  GYYMGMGRGSAAGSLVAYVLDITGIDPVKNDLLFERFLNKERYSMPDIDIDLPDIYRSEF 352

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV+++YG +  AQI+TF +  AK A+RDV +       ++ +L K I           
Sbjct: 353  LHYVRDRYGSKHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKISF---RDTLTT 409

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+         R  EI++ +EG  R  S HAAGIV+ D  L+  +P+     
Sbjct: 410  VYEKNMSFRQLINQRQEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTNHIPL--KAG 467

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFLAQRGVKVDLSLIPFDDHETY 609
             D+ VTQ++   +E  GL+K DFLGL+ LT +QK       ++G+ +D+  I  +D +T 
Sbjct: 468  EDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGIAIDIKSIDLEDSQTL 527

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E +G    L+ ++P   E+++A  SL RPG  D    +  RK GKE
Sbjct: 528  ALFASGKTKGIFQFEQAGAINLLKRIKPAKFEEVVATTSLNRPGASDYTDNFVARKYGKE 587

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  I P++ P+L+ T G+++YQEQVMQIAQ+ +G+SL +AD+LRRAM KK   EM K  
Sbjct: 588  KVDLIDPVVAPILEPTYGIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSKKDANEMSKMS 647

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E+F+ G+ + G    +A  +F ++ KFA YGFNKSHA AY+ +++Q A+ KTHYP  F  
Sbjct: 648  EQFMEGSRQLGRDPQVAKRLFSMITKFAGYGFNKSHAYAYSALAFQLAYFKTHYPQIFYD 707

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +            + +DA +    +    +N      K+ D +I   L  IKG+    
Sbjct: 708  VMLN------YSSSDYIRDAIENGFSLASLDINRIPYMDKISDGKIVLGLKTIKGLPRDF 761

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            A  I+E    +  + S+EDF +R+ SK     +L  L+  G  D F  +R +++ +L N+
Sbjct: 762  ALWIIEDRQQNGKYISIEDFLTRIPSKYQKVDILTPLIQIGLFDRFEPNRRKIIGNLSNL 821

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +   +         ++FA    ++ +          + + R+  EQ +LG   S HPL
Sbjct: 822  FTFVNEL--------GSLFAESSYSWVEY------EDYSQTERYSIEQDLLGVGLSTHPL 867

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                 + +KM  + Y+        +   +   + S +  +T+KG ++ +++  +   + +
Sbjct: 868  ----HLAQKMASRPYQPISELTLNSKATVLVQLESVRIIRTKKGDQMAFLSVFDGVNKLD 923

Query: 1029 ANFFP 1033
               FP
Sbjct: 924  VTLFP 928


>gi|255928078|gb|ACU41697.1| gp202 [Mycobacterium phage LRRHood]
          Length = 1172

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 244/1107 (22%), Positives = 451/1107 (40%), Gaps = 112/1107 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H   S+L+G      +  +       ++AITD +++     F +   AAG++P++G 
Sbjct: 49   LHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRFQKACQAAGVKPVLGA 108

Query: 74   Q----LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +    L+I        + + KT       IVLL     G + L  L S  Y  +Q  +  
Sbjct: 109  EQRWMLNIAD------SRERKTGASDSSHIVLLAENNTGLRNLWALSSLAYEPEQFYKKP 162

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-- 187
            ++    L +   +GL    G            +   +A +       +FGD  Y  L   
Sbjct: 163  QLDPGLLMQY-RDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFGDHFYSELHTW 221

Query: 188  ----RHRGYDRYRESQV-------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
                      +   +++       V+LA    +PLV  N++ +  E  ++ H  +  ++ 
Sbjct: 222  QFINPVSPEQQALNAKMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMST 281

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF- 295
             +    +   R     ++ N  E+               E  R   +I       +    
Sbjct: 282  GSWKKDQHEERGHAADWMMNADEIRHYMGLHGVGTSVIEEAMRNSGWIADQCNAEIDGKL 341

Query: 296  -IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                       E+    R     G +       + KG     YRQRL++E  +I     +
Sbjct: 342  LAMPRLHATDAEDAAAFRRAIEEGFKRF----VVDKGLPEDVYRQRLEYEAKLIIDKNMA 397

Query: 355  GYFLIVADFIQWAK-------------KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            GYF +VAD++  A+                   GPGRGS  GS+  Y + IT IDP+++ 
Sbjct: 398  GYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIKYD 457

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            L+FERF+NPDR   PD D+DF + ++  V +Y+  +YG   V  I T    + +  L+D+
Sbjct: 458  LMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQDL 517

Query: 462  GRALQMPYSQVDRL----------------CKLIPNDPAHPVSLQAIADDSRFREARLAD 505
             RA  +P+ ++ ++                 +L  ++                       
Sbjct: 518  CRAQGIPFGEMKKMIDLVEQVDQIAPFEEGMELPEDEDPPTWGEVLQEIGGELAPYAKKY 577

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL-SQLVPMYRDVRSDLPVTQFNMKWIE 564
            P +  L+   +++  + R    H AG+++   P+   L+P  R   +D+  TQF+M  +E
Sbjct: 578  PDLFNLM---EQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRATQFDMYELE 634

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP-------------------FDD 605
            + G +K D L  K L +L  + D + +R                              +D
Sbjct: 635  ELGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPEGAEKVIALNEERYLND 694

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI---VVYN 662
               Y  +    T G+FQ+ +    +     +P  + D+  L S+ RPG          Y 
Sbjct: 695  PAIYDQIDRGQTAGLFQVNTPAGTKLAMRFKPRSVVDMADLASINRPGVTRVPGLLDKYI 754

Query: 663  NRKNGKEKIVSIHPLIDPMLK-----ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
             R++G+E++   HPL++ +        T G+++YQEQ+++ A+ L+G++  EA+ LR+ +
Sbjct: 755  ERRHGREQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPGEAERLRKGI 814

Query: 718  GKKIKEEMDKQKERFISGA------SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            GKK  E +++ + +F+ G          G ++ +A  I++ L     Y FNKSH   YA+
Sbjct: 815  GKKKMEIINELEPKFLDGCMANSEFVNQGGTRKVADRIWQSLKAAGAYAFNKSHGVGYAL 874

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
               Q AW+K +Y  EF+   +   + + +K  +F ++ RQ    ++PP VN     F + 
Sbjct: 875  QPCQEAWVKHYYFDEFITGCL---VIHTDKTIRFLRECRQRKRAVLPPDVNQSGAGFTLT 931

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR-VLESLVFAGA 890
            D  I + L  I G+G      I+   A++PF  L+DF +R       ++ V+++L+  GA
Sbjct: 932  DEGIRFGLTDISGIGDAAMPDIL---ANRPFKDLDDFLARASKSGGAKKGVVDALIKVGA 988

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSS 949
             D  G  R  +L+ +   ++      K      +   A        K      ++ E+  
Sbjct: 989  FDFTGEHRQVMLEKVYRHRRGLSAPVKWAKMSLDEQVAEIAAKRRVKPEDYPVYNFEDPQ 1048

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
               + E  +LG + S  P+  Y  ++    I+   +      G+   +   +V  +  + 
Sbjct: 1049 FIHDLEVEMLGTFVSYDPMAKYARMIDGECIRHPMDYDDFEPGDRFCVGGKLVKARTHRQ 1108

Query: 1010 RKGSRIGWVTF----SEPAKEYEANFF 1032
            + G ++ ++       +    +E   F
Sbjct: 1109 KNGKQMAFLAVHWNEED----FEILAF 1131


>gi|297580888|ref|ZP_06942813.1| DNA polymerase III [Vibrio cholerae RC385]
 gi|297534714|gb|EFH73550.1| DNA polymerase III [Vibrio cholerae RC385]
          Length = 649

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 268/667 (40%), Positives = 394/667 (59%), Gaps = 28/667 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +   P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A  
Sbjct: 1   MSD-PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 59

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G++PIIG    +          Q +     +  + LL     GY+ L  L+S+ YL   
Sbjct: 60  CGVKPIIGADFTL----------QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGH 109

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            +    I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+
Sbjct: 110 VQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYL 168

Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            L R    D        + +A  ++LP+VATN  +F++EE +EAH++ +A+     +   
Sbjct: 169 ELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 228

Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            RP+  +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++       +       
Sbjct: 229 RRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPT 283

Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 284 GGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLI 343

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
           P DP   +    IA +   +E   AD  V  L++  + LEG  R+A  HA G+VI    +
Sbjct: 464 PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 522

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
           +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523 TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 582

Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            V +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L+RPGP
Sbjct: 583 PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGP 642

Query: 655 IDNIVVY 661
           + + +V 
Sbjct: 643 LQSGMVD 649


>gi|312882444|ref|ZP_07742185.1| error-prone DNA polymerase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369844|gb|EFP97355.1| error-prone DNA polymerase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 1023

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 253/1038 (24%), Positives = 440/1038 (42%), Gaps = 86/1038 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--I 67
            S+  L   +++S L GA     ++ +    +  ++AITD  ++   ++  +        +
Sbjct: 2    SYAELFCQTNFSFLTGASHAEELILRADFLRYHSLAITDECSVAGVVKAYRTIKNHQLSV 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
              IIG    ++                    ++LL      Y  L  ++S      + K 
Sbjct: 62   DLIIGSMFWLNPH----------------CQVILLCPDKSAYAELCRIISNARRRSE-KG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            S ++    L  +    +I L                ++          +    RL++ +Q
Sbjct: 105  SYQLSEWDLMSVRHCLIIWLP-------------QHNKEDHHWGTWLNRHHKTRLWLGIQ 151

Query: 188  RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDR 245
            RH G D  R      +LA+   LP+ A    L  + +       L A+ H+  +    +R
Sbjct: 152  RHLGPDDKRYLEHSQKLAHEIALPITACGGVLMHTADRLPLQHTLSAIKHNCKIEELGER 211

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                 +  L+++ ++  +F         +  IA+ C F L       P  +  +      
Sbjct: 212  MLTNSERSLRSQEKLSKLFKAEWML--ESTHIAKLCKFNLDEIQYEYPSELVPK----DH 265

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               + L+     G ++R  +G  A      D +  +D EL +I  + +  YFL + D + 
Sbjct: 266  TPISYLKYLVEQGKKIRFPEGISA------DIQHTIDKELALIEELNYPFYFLTIHDIVM 319

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +AK++ I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +
Sbjct: 320  FAKRSQILY-QGRGSAANSVVCYCLEITSVDPRQISVLFERFISKERDEPPDIDVDFEHE 378

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG ER A   T  + + K+A+RDVGRAL +  SQ+D   + +      
Sbjct: 379  RREEVIQYIYKKYGRERAALAATVITYRFKSAIRDVGRALGIEASQLDFFIRNVDRRDRK 438

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                  I           +     + +E+  ++ G  RH S H  G VI   PL  LVP+
Sbjct: 439  QNWQAQIVA----LGLEPSSLKGQQFIELVSRIIGFPRHLSQHVGGFVITSGPLYDLVPI 494

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA---QRGVKVDLSLIP 602
                  D  V Q++   +E   L+K D L L  LT ++K    +    +  + +      
Sbjct: 495  ENAAMPDRTVIQWDKDDLESLKLLKVDILALGMLTAIRKCFSLIKDLNKHTLSIADITRR 554

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD + Y ++    T+G+FQ+ES      L  ++P    D++  +++ RPGPI   +V+ 
Sbjct: 555  QDDDDVYQMIQNADTVGVFQIESRAQMNMLPRLRPKTYYDLVIQIAIVRPGPIQGDMVHP 614

Query: 663  NRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
              K     E++V     +  +L+ T GV I+QEQV++IA + +G+S  EAD LRRAM   
Sbjct: 615  FLKRRNGIEQVVYPSREVKDVLERTLGVPIFQEQVIKIAMVAAGFSGGEADQLRRAMAAW 674

Query: 721  IKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
             K     K K + + G +K G S   A  +FE +  F +YGF +SH+A++AV++Y +AW+
Sbjct: 675  KKNGELIKFKTKLVDGMTKRGYSMEFAHQLFEQILGFGEYGFPESHSASFAVLAYCSAWL 734

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN----RI 835
            K HYP  F A+ +           +  QDA++ N+ ++P  +NT   D++V  +     I
Sbjct: 735  KYHYPEAFYASLLNSLPMGFYSASQLVQDAKRHNVIVLPVCINTSTYDYQVVKHLNKLAI 794

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                  IKG    +A  I++    + F  +      V    LN++ +E L  A AL C  
Sbjct: 795  RLGFRQIKGFSRASANSIVQLRPSQGFTHINQ----VKQCHLNKKDIELLSSADALYCLN 850

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R Q    + +            +     +F H +   +  +        +       +
Sbjct: 851  QHRYQTRWDIMD------------STSDLPLFHHLEEERTLSLAAP-----SDYQTLLED 893

Query: 956  QRVLGFYFSGHPLDVYKPILRKMG-IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
                G     HP+ +     + +G     +E       + + +  +V  KQ   T  G  
Sbjct: 894  YATTGLSLRHHPITLL-DQAKLIGRFTRMQELPYKNDQSLVTVVGVVTGKQSPGTASG-- 950

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + ++T  +         +
Sbjct: 951  VTFITLEDDTGNINVIVW 968


>gi|109393383|ref|YP_656181.1| gp201 [Mycobacterium phage Catera]
 gi|91981205|gb|ABE67920.1| gp201 [Mycobacterium phage Catera]
          Length = 1131

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 244/1107 (22%), Positives = 451/1107 (40%), Gaps = 112/1107 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H   S+L+G      +  +       ++AITD +++     F +   AAG++P++G 
Sbjct: 8    LHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRFQKACQAAGVKPVLGA 67

Query: 74   Q----LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +    L+I        + + KT       IVLL     G + L  L S  Y  +Q  +  
Sbjct: 68   EQRWMLNIAD------SRERKTGASDSSHIVLLAENNTGLRNLWALSSLAYEPEQFYKKP 121

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-- 187
            ++    L +   +GL    G            +   +A +       +FGD  Y  L   
Sbjct: 122  QLDPGLLMQY-RDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFGDHFYSELHTW 180

Query: 188  ----RHRGYDRYRESQV-------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
                      +   +++       V+LA    +PLV  N++ +  E  ++ H  +  ++ 
Sbjct: 181  QFINPVSPEQQALNAKMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMST 240

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF- 295
             +    +   R     ++ N  E+               E  R   +I       +    
Sbjct: 241  GSWKKDQHEERGHAADWMMNADEIRHYMGLHGVGTSVIEEAMRNSGWIADQCNAEIDGKL 300

Query: 296  -IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                       E+    R     G +       + KG     YRQRL++E  +I     +
Sbjct: 301  LAMPRLHATDAEDAAAFRRAIEEGFKRF----VVDKGLPEDVYRQRLEYEAKLIIDKNMA 356

Query: 355  GYFLIVADFIQWAK-------------KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            GYF +VAD++  A+                   GPGRGS  GS+  Y + IT IDP+++ 
Sbjct: 357  GYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIKYD 416

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            L+FERF+NPDR   PD D+DF + ++  V +Y+  +YG   V  I T    + +  L+D+
Sbjct: 417  LMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQDL 476

Query: 462  GRALQMPYSQVDRL----------------CKLIPNDPAHPVSLQAIADDSRFREARLAD 505
             RA  +P+ ++ ++                 +L  ++                       
Sbjct: 477  CRAQGIPFGEMKKMIDLVEQVDQIAPFEEGMELPEDEDPPTWGEVLQEIGGELAPYAKKY 536

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL-SQLVPMYRDVRSDLPVTQFNMKWIE 564
            P +  L+   +++  + R    H AG+++   P+   L+P  R   +D+  TQF+M  +E
Sbjct: 537  PDLFNLM---EQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRATQFDMYELE 593

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP-------------------FDD 605
            + G +K D L  K L +L  + D + +R                              +D
Sbjct: 594  ELGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPEGAEKVITLNEERYLND 653

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI---VVYN 662
               Y  +    T G+FQ+ +    +     +P  + D+  L S+ RPG          Y 
Sbjct: 654  PAIYDQIDRGQTAGLFQVNTPAGTKLAMRFKPRSVVDMADLASINRPGVTRVPGLLDKYI 713

Query: 663  NRKNGKEKIVSIHPLIDPMLK-----ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
             R++G+E++   HPL++ +        T G+++YQEQ+++ A+ L+G++  EA+ LR+ +
Sbjct: 714  ERRHGREQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPGEAERLRKGI 773

Query: 718  GKKIKEEMDKQKERFISGA------SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            GKK  E +++ + +F+ G          G ++ +A  I++ L     Y FNKSH   YA+
Sbjct: 774  GKKKMEIINELEPKFLDGCMANPEFVNQGGTRKVADRIWQSLKAAGAYAFNKSHGVGYAL 833

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
               Q AW+K +Y  EF+   +   + + +K  +F ++ RQ    ++PP VN     F + 
Sbjct: 834  QPCQEAWVKHYYFDEFITGCL---VIHTDKTIRFLRECRQRKRAVLPPDVNQSGAGFTLT 890

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR-VLESLVFAGA 890
            D  I + L  I G+G      I+   A++PF  L+DF +R       ++ V+++L+  GA
Sbjct: 891  DEGIRFGLTDISGIGDAAMPDIL---ANRPFKDLDDFLARASKSGGAKKGVVDALIKVGA 947

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSS 949
             D  G  R  +L+ +   ++      K      +   A        K      ++ E+  
Sbjct: 948  FDFTGEHRQVMLEKVYRHRRGLSAPVKWAKMSLDEQVAEIAAKRRVKPEDYPVYNFEDPQ 1007

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
               + E  +LG + S  P+  Y  ++    I+   +      G+   +   +V  +  + 
Sbjct: 1008 FIHDLEVEMLGTFVSYDPMAKYARMIDGECIRHPMDYDDFEPGDRFCVGGKLVKARTHRQ 1067

Query: 1010 RKGSRIGWVTF----SEPAKEYEANFF 1032
            + G ++ ++       +    +E   F
Sbjct: 1068 KNGKQMAFLAVHWNEED----FEILAF 1090


>gi|203459045|ref|YP_002224201.1| gp202 [Mycobacterium phage ScottMcG]
 gi|203460690|ref|YP_002224424.1| gp203 [Mycobacterium phage Spud]
 gi|197312271|gb|ACH62627.1| gp203 [Mycobacterium phage Spud]
 gi|197312492|gb|ACH62847.1| gp202 [Mycobacterium phage ScottMcG]
          Length = 1131

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 244/1107 (22%), Positives = 451/1107 (40%), Gaps = 112/1107 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H   S+L+G      +  +       ++AITD +++     F +   AAG++P++G 
Sbjct: 8    LHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRFQKACQAAGVKPVLGA 67

Query: 74   Q----LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +    L+I        + + KT       IVLL     G + L  L S  Y  +Q  +  
Sbjct: 68   EQRWMLNIAD------SRERKTGASDSSHIVLLAENNTGLRNLWALSSLAYEPEQFYKKP 121

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-- 187
            ++    L +   +GL    G            +   +A +       +FGD  Y  L   
Sbjct: 122  QLDPGLLMQY-RDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFGDHFYSELHTW 180

Query: 188  ----RHRGYDRYRESQV-------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
                      +   +++       V+LA    +PLV  N++ +  E  ++ H  +  ++ 
Sbjct: 181  QFINPVSPEQQALNAKMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMST 240

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF- 295
             +    +   R     ++ N  E+               E  R   +I       +    
Sbjct: 241  GSWKKDQHEERGHAADWMMNADEIRHYMGLHGVGTSVIEEAMRNSGWIADQCNAEIDGKL 300

Query: 296  -IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                       E+    R     G +       + KG     YRQRL++E  +I     +
Sbjct: 301  LAMPRLHATDAEDAAAFRRAIEEGFKRF----VVDKGLPEDVYRQRLEYEAKLIIDKNMA 356

Query: 355  GYFLIVADFIQWAK-------------KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            GYF +VAD++  A+                   GPGRGS  GS+  Y + IT IDP+++ 
Sbjct: 357  GYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIKYD 416

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            L+FERF+NPDR   PD D+DF + ++  V +Y+  +YG   V  I T    + +  L+D+
Sbjct: 417  LMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQDL 476

Query: 462  GRALQMPYSQVDRL----------------CKLIPNDPAHPVSLQAIADDSRFREARLAD 505
             RA  +P+ ++ ++                 +L  ++                       
Sbjct: 477  CRAQGIPFGEMKKMIDLVEQVDQIAPFEEGMELPEDEDPPTWGEVLQEIGGELAPYAKKY 536

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL-SQLVPMYRDVRSDLPVTQFNMKWIE 564
            P +  L+   +++  + R    H AG+++   P+   L+P  R   +D+  TQF+M  +E
Sbjct: 537  PDLFNLM---EQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRATQFDMYELE 593

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP-------------------FDD 605
            + G +K D L  K L +L  + D + +R                              +D
Sbjct: 594  ELGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPEGAEKVIALNEERYLND 653

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI---VVYN 662
               Y  +    T G+FQ+ +    +     +P  + D+  L S+ RPG          Y 
Sbjct: 654  PAIYDQIDRGQTAGLFQVNTPAGTKLAMRFKPRSVVDMADLASINRPGVTRVPGLLDKYI 713

Query: 663  NRKNGKEKIVSIHPLIDPMLK-----ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
             R++G+E++   HPL++ +        T G+++YQEQ+++ A+ L+G++  EA+ LR+ +
Sbjct: 714  ERRHGREQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPGEAERLRKGI 773

Query: 718  GKKIKEEMDKQKERFISGA------SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            GKK  E +++ + +F+ G          G ++ +A  I++ L     Y FNKSH   YA+
Sbjct: 774  GKKKMEIINELEPKFLDGCMANSEFVNQGGTRKVADRIWQSLKAAGAYAFNKSHGVGYAL 833

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
               Q AW+K +Y  EF+   +   + + +K  +F ++ RQ    ++PP VN     F + 
Sbjct: 834  QPCQEAWVKHYYFDEFITGCL---VIHTDKTIRFLRECRQRKRAVLPPDVNQSGAGFTLT 890

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR-VLESLVFAGA 890
            D  I + L  I G+G      I+   A++PF  L+DF +R       ++ V+++L+  GA
Sbjct: 891  DEGIRFGLTDISGIGDAAMPDIL---ANRPFKDLDDFLARASKSGGAKKGVVDALIKVGA 947

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSS 949
             D  G  R  +L+ +   ++      K      +   A        K      ++ E+  
Sbjct: 948  FDFTGEHRQVMLEKVYRHRRGLSAPVKWAKMSLDEQVAEIAAKRRVKPEDYPVYNFEDPQ 1007

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
               + E  +LG + S  P+  Y  ++    I+   +      G+   +   +V  +  + 
Sbjct: 1008 FIHDLEVEMLGTFVSYDPMAKYARMIDGECIRHPMDYDDFEPGDRFCVGGKLVKARTHRQ 1067

Query: 1010 RKGSRIGWVTF----SEPAKEYEANFF 1032
            + G ++ ++       +    +E   F
Sbjct: 1068 KNGKQMAFLAVHWNEED----FEILAF 1090


>gi|167736963|ref|ZP_02409737.1| error-prone DNA polymerase [Burkholderia pseudomallei 14]
          Length = 890

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 257/908 (28%), Positives = 402/908 (44%), Gaps = 54/908 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129 VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            R+    L         L  +    +  +        + V + +L  F  LFG+R  + L
Sbjct: 124 YRLTPRMLAAPPRALAHLRGVPDCFAILVPTY--PARADVLDAQLAWFDALFGERARLGL 181

Query: 187 -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q  R  D     QV        + +VA  +            D + A+        +  
Sbjct: 182 VQLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMP-IAECG 240

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + P+     R+          +AL  T  +   C F L       P  I         
Sbjct: 241 HALAPNGEQHLRTRQRIAQLFPADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----H 296

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D ++
Sbjct: 297 TSTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVK 350

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+  +I    GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   
Sbjct: 351 YARSKDIL-CQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQ 409

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K        
Sbjct: 410 RREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGS 469

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              L   A            P +    EI+ +L    RH S H+ G V+    L++LVP+
Sbjct: 470 RDLLARFASV----GLDPEVPLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPV 525

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDL 598
                    V Q++   +E  GL+K D L L  L+ L ++ D +               L
Sbjct: 526 ENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRL 585

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI   
Sbjct: 586 EHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGG 645

Query: 659 VVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            V+   +  +        +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD
Sbjct: 646 AVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEAD 705

Query: 712 VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            LRRAM     K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A
Sbjct: 706 ALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFA 765

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  +
Sbjct: 766 KLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASL 825

Query: 831 G----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                         +   L+ ++G+G   AR I  A A  PF S+++   R     L RR
Sbjct: 826 EAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRA---CLERR 882

Query: 881 VLESLVFA 888
            LE+L  A
Sbjct: 883 DLEALAAA 890


>gi|29566684|ref|NP_818250.1| gp199 [Mycobacterium phage Bxz1]
 gi|29425409|gb|AAN16833.1| gp199 [Mycobacterium phage Bxz1]
          Length = 1131

 Score =  471 bits (1211), Expect = e-130,   Method: Composition-based stats.
 Identities = 244/1107 (22%), Positives = 451/1107 (40%), Gaps = 112/1107 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H   S+L+G      +  +       ++AITD +++     F +   AAG++P++G 
Sbjct: 8    LHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRFQKACQAAGVKPVLGA 67

Query: 74   Q----LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +    L+I        + + KT       IVLL     G + L  L S  Y  +Q  +  
Sbjct: 68   EQRWMLNIAD------SRERKTGASDSSHIVLLAENNTGLRNLWALSSLAYEPEQFYKKP 121

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-- 187
            ++    L +   +GL    G            +   +A +       +FGD  Y  L   
Sbjct: 122  QLDPGLLMQY-RDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFGDHFYSELHTW 180

Query: 188  ----RHRGYDRYRESQV-------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
                      +   +++       V+LA    +PLV  N++ +  E  ++ H  +  ++ 
Sbjct: 181  QFINPVSPEQQALNARMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMST 240

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF- 295
             +    +   R     ++ N  E+               E  R   +I       +    
Sbjct: 241  GSWKKDQHEERGHAADWMMNADEIRHYMGLHGVGTSVIEEAMRNSGWIADQCNAEIDGKL 300

Query: 296  -IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                       E+    R     G +       + KG     YRQRL++E  +I     +
Sbjct: 301  LAMPRLHATDAEDAAAFRRAIEEGFKRF----VVDKGLPEDVYRQRLEYEAKLIIDKNMA 356

Query: 355  GYFLIVADFIQWAK-------------KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            GYF +VAD++  A+                   GPGRGS  GS+  Y + IT IDP+++ 
Sbjct: 357  GYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIKYD 416

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            L+FERF+NPDR   PD D+DF + ++  V +Y+  +YG   V  I T    + +  L+D+
Sbjct: 417  LMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQDL 476

Query: 462  GRALQMPYSQVDRL----------------CKLIPNDPAHPVSLQAIADDSRFREARLAD 505
             RA  +P+ ++ ++                 +L  ++                       
Sbjct: 477  CRAQGIPFGEMKKMIDLVEQVDQIAPFEEGMELPEDEDPPTWGEVLQEIGGELAPYAKKY 536

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL-SQLVPMYRDVRSDLPVTQFNMKWIE 564
            P +  L+   +++  + R    H AG+++   P+   L+P  R   +D+  TQF+M  +E
Sbjct: 537  PDLFNLM---EQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRATQFDMYELE 593

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP-------------------FDD 605
            + G +K D L  K L +L  + D + +R                              +D
Sbjct: 594  ELGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPEGAEKVITLNEERYLND 653

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI---VVYN 662
               Y  +    T G+FQ+ +    +     +P  + D+  L S+ RPG          Y 
Sbjct: 654  PAIYDQIDRGQTAGLFQVNTPAGTKLAMRFRPRSVVDMADLASINRPGVTRVPGLLDKYI 713

Query: 663  NRKNGKEKIVSIHPLIDPMLK-----ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
             R++G+E++   HPL++ +        T G+++YQEQ+++ A+ L+G++  EA+ LR+ +
Sbjct: 714  ERRHGREQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPGEAERLRKGI 773

Query: 718  GKKIKEEMDKQKERFISGA------SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            GKK  E +++ + +F+ G          G ++ +A  I++ L     Y FNKSH   YA+
Sbjct: 774  GKKKMEIINELEPKFLDGCMANPEFVNQGGTRKVADRIWQSLKAAGAYAFNKSHGVGYAL 833

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
               Q AW+K +Y  EF+   +   + + +K  +F ++ RQ    ++PP VN     F + 
Sbjct: 834  QPCQEAWVKHYYFDEFITGCL---VIHTDKTIRFLRECRQRKRAVLPPDVNQSGAGFTLT 890

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR-VLESLVFAGA 890
            D  I + L  I G+G      I+   A++PF  L+DF +R       ++ V+++L+  GA
Sbjct: 891  DEGIRFGLTDISGIGDAAMPDIL---ANRPFKDLDDFLARASKSGGAKKGVVDALIKVGA 947

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSS 949
             D  G  R  +L+ +   ++      K      +   A        K      ++ E+  
Sbjct: 948  FDFTGEHRQVMLEKVYRHRRGLSAPVKWAKMSLDEQVAEIAAKRRVKPEDYPVYNFEDPQ 1007

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
               + E  +LG + S  P+  Y  ++    I+   +      G+   +   +V  +  + 
Sbjct: 1008 FIHDLEVEMLGTFVSYDPMAKYARMIDGECIRHPMDYDDFEPGDRFCVGGKLVKARTHRQ 1067

Query: 1010 RKGSRIGWVTF----SEPAKEYEANFF 1032
            + G ++ ++       +    +E   F
Sbjct: 1068 KNGKQMAFLAVHWNEED----FEILAF 1090


>gi|203457520|ref|YP_002224866.1| gp201 [Mycobacterium phage Rizal]
 gi|197312048|gb|ACH62405.1| gp201 [Mycobacterium phage Rizal]
          Length = 1162

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 244/1107 (22%), Positives = 451/1107 (40%), Gaps = 112/1107 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H   S+L+G      +  +       ++AITD +++     F +   AAG++P++G 
Sbjct: 39   LHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRFQKACQAAGVKPVLGA 98

Query: 74   Q----LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +    L+I        + + KT       IVLL     G + L  L S  Y  +Q  +  
Sbjct: 99   EQRWMLNIAD------SRERKTGASDSSHIVLLAENNTGLRNLWALSSLAYEPEQFYKKP 152

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-- 187
            ++    L +   +GL    G            +   +A +       +FGD  Y  L   
Sbjct: 153  QLDPGLLMQY-RDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFGDHFYSELHTW 211

Query: 188  ----RHRGYDRYRESQV-------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
                      +   +++       V+LA    +PLV  N++ +  E  ++ H  +  ++ 
Sbjct: 212  QFINPVSPEQQALNAKMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMST 271

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF- 295
             +    +   R     ++ N  E+               E  R   +I       +    
Sbjct: 272  GSWKKDQHEERGHAADWMMNADEIRHYMGLHGVGTSVIEEAMRNSGWIADQCNAEIDGKL 331

Query: 296  -IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                       E+    R     G +       + KG     YRQRL++E  +I     +
Sbjct: 332  LAMPRLHATDAEDAAAFRRAIEEGFKRF----VVDKGLPEDVYRQRLEYEAKLIIDKNMA 387

Query: 355  GYFLIVADFIQWAK-------------KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            GYF +VAD++  A+                   GPGRGS  GS+  Y + IT IDP+++ 
Sbjct: 388  GYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIKYD 447

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            L+FERF+NPDR   PD D+DF + ++  V +Y+  +YG   V  I T    + +  L+D+
Sbjct: 448  LMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQDL 507

Query: 462  GRALQMPYSQVDRL----------------CKLIPNDPAHPVSLQAIADDSRFREARLAD 505
             RA  +P+ ++ ++                 +L  ++                       
Sbjct: 508  CRAQGIPFGEMKKMIDLVEQVDQIAPFEEGMELPEDEDPPTWGEVLQEIGGELAPYAKKY 567

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL-SQLVPMYRDVRSDLPVTQFNMKWIE 564
            P +  L+   +++  + R    H AG+++   P+   L+P  R   +D+  TQF+M  +E
Sbjct: 568  PDLFNLM---EQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRATQFDMYELE 624

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP-------------------FDD 605
            + G +K D L  K L +L  + D + +R                              +D
Sbjct: 625  ELGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPEGAEKVITLNEERYLND 684

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI---VVYN 662
               Y  +    T G+FQ+ +    +     +P  + D+  L S+ RPG          Y 
Sbjct: 685  PAIYDQIDRGQTAGLFQVNTPAGTKLAMRFKPRSVVDMADLASINRPGVTRVPGLLDKYI 744

Query: 663  NRKNGKEKIVSIHPLIDPMLK-----ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
             R++G+E++   HPL++ +        T G+++YQEQ+++ A+ L+G++  EA+ LR+ +
Sbjct: 745  ERRHGREQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPGEAERLRKGI 804

Query: 718  GKKIKEEMDKQKERFISGA------SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            GKK  E +++ + +F+ G          G ++ +A  I++ L     Y FNKSH   YA+
Sbjct: 805  GKKKMEIINELEPKFLDGCMANPEFVNQGGTRKVADRIWQSLKAAGAYAFNKSHGVGYAL 864

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
               Q AW+K +Y  EF+   +   + + +K  +F ++ RQ    ++PP VN     F + 
Sbjct: 865  QPCQEAWVKHYYFDEFITGCL---VIHTDKTIRFLRECRQRKRAVLPPDVNQSGAGFTLT 921

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR-VLESLVFAGA 890
            D  I + L  I G+G      I+   A++PF  L+DF +R       ++ V+++L+  GA
Sbjct: 922  DEGIRFGLTDISGIGDAAMPDIL---ANRPFKDLDDFLARASKSGGAKKGVVDALIKVGA 978

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSS 949
             D  G  R  +L+ +   ++      K      +   A        K      ++ E+  
Sbjct: 979  FDFTGEHRQVMLEKVYRHRRGLSAPVKWAKMSLDEQVAEIAAKRRVKPEDYPVYNFEDPQ 1038

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
               + E  +LG + S  P+  Y  ++    I+   +      G+   +   +V  +  + 
Sbjct: 1039 FIHDLEVEMLGTFVSYDPMAKYARMIDGECIRHPMDYDDFEPGDRFCVGGKLVKARTHRQ 1098

Query: 1010 RKGSRIGWVTF----SEPAKEYEANFF 1032
            + G ++ ++       +    +E   F
Sbjct: 1099 KNGKQMAFLAVHWNEED----FEILAF 1121


>gi|204305829|ref|YP_002224646.1| gp202 [Mycobacterium phage Cali]
 gi|197312802|gb|ACH63155.1| gp202 [Mycobacterium phage Cali]
          Length = 1160

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 244/1107 (22%), Positives = 451/1107 (40%), Gaps = 112/1107 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H   S+L+G      +  +       ++AITD +++     F +   AAG++P++G 
Sbjct: 37   LHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRFQKACQAAGVKPVLGA 96

Query: 74   Q----LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +    L+I        + + KT       IVLL     G + L  L S  Y  +Q  +  
Sbjct: 97   EQRWMLNIAD------SRERKTGASDSSHIVLLAENNTGLRNLWALSSLAYEPEQFYKKP 150

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-- 187
            ++    L +   +GL    G            +   +A +       +FGD  Y  L   
Sbjct: 151  QLDPGLLMQY-RDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFGDHFYSELHTW 209

Query: 188  ----RHRGYDRYRESQV-------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
                      +   +++       V+LA    +PLV  N++ +  E  ++ H  +  ++ 
Sbjct: 210  QFINPVSPEQQALNAKMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMST 269

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF- 295
             +    +   R     ++ N  E+               E  R   +I       +    
Sbjct: 270  GSWKKDQHEERGHAADWMMNADEIRHYMGLHGVGTSVIEEAMRNSGWIADQCNAEIDGKL 329

Query: 296  -IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                       E+    R     G +       + KG     YRQRL++E  +I     +
Sbjct: 330  LAMPRLHATDAEDAAAFRRAIEEGFKRF----VVDKGLPEDVYRQRLEYEAKLIIDKNMA 385

Query: 355  GYFLIVADFIQWAK-------------KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            GYF +VAD++  A+                   GPGRGS  GS+  Y + IT IDP+++ 
Sbjct: 386  GYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIKYD 445

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            L+FERF+NPDR   PD D+DF + ++  V +Y+  +YG   V  I T    + +  L+D+
Sbjct: 446  LMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQDL 505

Query: 462  GRALQMPYSQVDRL----------------CKLIPNDPAHPVSLQAIADDSRFREARLAD 505
             RA  +P+ ++ ++                 +L  ++                       
Sbjct: 506  CRAQGIPFGEMKKMIDLVEQVDQIAPFEEGMELPEDEDPPTWGEVLQEIGGELAPYAKKY 565

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL-SQLVPMYRDVRSDLPVTQFNMKWIE 564
            P +  L+   +++  + R    H AG+++   P+   L+P  R   +D+  TQF+M  +E
Sbjct: 566  PDLFNLM---EQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRATQFDMYELE 622

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP-------------------FDD 605
            + G +K D L  K L +L  + D + +R                              +D
Sbjct: 623  ELGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPEGAEKVIALNEERYLND 682

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI---VVYN 662
               Y  +    T G+FQ+ +    +     +P  + D+  L S+ RPG          Y 
Sbjct: 683  PAIYDQIDRGQTAGLFQVNTPAGTKLAMRFKPRSVVDMADLASINRPGVTRVPGLLDKYI 742

Query: 663  NRKNGKEKIVSIHPLIDPMLK-----ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
             R++G+E++   HPL++ +        T G+++YQEQ+++ A+ L+G++  EA+ LR+ +
Sbjct: 743  ERRHGREQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPGEAERLRKGI 802

Query: 718  GKKIKEEMDKQKERFISGA------SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            GKK  E +++ + +F+ G          G ++ +A  I++ L     Y FNKSH   YA+
Sbjct: 803  GKKKMEIINELEPKFLDGCMANSEFVNQGGTRKVADRIWQSLKAAGAYAFNKSHGVGYAL 862

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
               Q AW+K +Y  EF+   +   + + +K  +F ++ RQ    ++PP VN     F + 
Sbjct: 863  QPCQEAWVKHYYFDEFITGCL---VIHTDKTIRFLRECRQRKRAVLPPDVNQSGAGFTLT 919

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR-VLESLVFAGA 890
            D  I + L  I G+G      I+   A++PF  L+DF +R       ++ V+++L+  GA
Sbjct: 920  DEGIRFGLTDISGIGDAAMPDIL---ANRPFKDLDDFLARASKSGGAKKGVVDALIKVGA 976

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSS 949
             D  G  R  +L+ +   ++      K      +   A        K      ++ E+  
Sbjct: 977  FDFTGEHRQVMLEKVYRHRRGLSAPVKWAKMSLDEQVAEIAAKRRVKPEDYPVYNFEDPQ 1036

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
               + E  +LG + S  P+  Y  ++    I+   +      G+   +   +V  +  + 
Sbjct: 1037 FIHDLEVEMLGTFVSYDPMAKYARMIDGECIRHPMDYDDFEPGDRFCVGGKLVKARTHRQ 1096

Query: 1010 RKGSRIGWVTF----SEPAKEYEANFF 1032
            + G ++ ++       +    +E   F
Sbjct: 1097 KNGKQMAFLAVHWNEED----FEILAF 1119


>gi|125717690|ref|YP_001034823.1| DNA polymerase III DnaE [Streptococcus sanguinis SK36]
 gi|125497607|gb|ABN44273.1| DNA-polymerase III alpha-chain, putative [Streptococcus sanguinis
            SK36]
          Length = 1069

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 288/1023 (28%), Positives = 482/1023 (47%), Gaps = 98/1023 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 36   IQLDTKTVYSFMDSLVPIKKYVQKAKDLGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 95

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +L +                     + LL   ++GY+ L++ VS + ++ Q       
Sbjct: 96   GLELSL-------------IKAEQELHLRLLALDSQGYRNLMK-VSTLKMMGQKN----- 136

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                 Q +  +GL ++     G  D                      G   YV +     
Sbjct: 137  -WEDFQHLF-KGLAVIVPAFDGVADLDL-------------------GLDFYVGVFPATP 175

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                              P +  +   +    D E   +L A+  +  + +         
Sbjct: 176  Q------------QEFGRPTLPLHTVRYFDRGDLETLQMLRAIRENASLREIG------- 216

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
              L N   +++  +      E   E       +++     + R ++    + ++    EL
Sbjct: 217  -SLPNHEFLLAPDALAGAFKETFPESLANLEKLVRDVHYDINRELKLPRFNRERPAVEEL 275

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R ++ AGL+ R        G   + Y++RLD EL VI +M F  YFLIV D +++ +   
Sbjct: 276  RERSEAGLKKR--------GLTGKLYQERLDQELAVIHQMGFDDYFLIVWDLLRFGRSQG 327

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E I
Sbjct: 328  YYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPEFI 387

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +      A
Sbjct: 388  RYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLT---SA 444

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+      
Sbjct: 445  YEKNMAFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPLKYG--E 502

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +   ++    ++++ I  +D  T  
Sbjct: 503  DMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLEKYKVDIEIAEIDLEDANTLK 562

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+G E+
Sbjct: 563  LFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGLEQ 622

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + +E
Sbjct: 623  VELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAAEMHRMQE 682

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F   
Sbjct: 683  DFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAFFKAHYPDVFFDV 742

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA  F+ +  P S+N      K  D +I+  L  IKG+    A
Sbjct: 743  MLN------YSSSDYITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLPRDLA 796

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L N+  
Sbjct: 797  YWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLPNLFV 856

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            +A  +         ++FA    ++++          + + +FE EQ ++G   S HPL  
Sbjct: 857  FADEL--------GSLFADTTYSWTEA------QDFSDAEKFELEQSIIGVGLSDHPL-- 900

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                L K   + +         +  R+ A V + +  +T+KG  + ++  S+  K+ +  
Sbjct: 901  --VKLAKEADQPFSWISELTENSRARILAEVQTIKTIRTKKGENMAFLQVSDTKKKLDVT 958

Query: 1031 FFP 1033
             FP
Sbjct: 959  LFP 961


>gi|325696758|gb|EGD38646.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK160]
          Length = 1069

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 292/1023 (28%), Positives = 482/1023 (47%), Gaps = 98/1023 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 36   IQLDTKTVYSFMDSLIPIKKYVQKAKGLGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 95

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +L +                     + LL   ++GY+ L++ VS + ++ Q       
Sbjct: 96   GLELSL-------------IKAEQELHLRLLALDSQGYRNLMK-VSTLKMMGQKN----- 136

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                 Q +  +GL ++     G  D                      G   YV +     
Sbjct: 137  -WEDFQHLF-KGLAVIVPAFDGVADLDL-------------------GLDFYVGIFPATP 175

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                              P +  +   +    D E   +L A+  +  +  ++   +   
Sbjct: 176  K------------QEFGRPTLPLHTVRYFDTGDLETLQMLQAIRENASL--REIGSLPNH 221

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +L     +   F +        +E   R           LPR       + ++    EL
Sbjct: 222  EFLLAPDALAGAFKETFPESLANLEKLVRHVHYDINRELKLPR------FNRERPAVEEL 275

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R ++ AGL+ R        G   + Y++RLD EL+VI +M F  YFLIV D +++ +   
Sbjct: 276  RERSEAGLQKR--------GLTGELYQERLDQELDVIHQMGFDDYFLIVWDLLRFGRSQG 327

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E I
Sbjct: 328  YYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPEFI 387

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +      A
Sbjct: 388  RYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLTT---A 444

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+      
Sbjct: 445  YEKNMAFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPLKYG--E 502

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D ET  
Sbjct: 503  DMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIAEIDLEDAETLK 562

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E  G    L  +QP C E+++A  SL RPG  D I  +  RK+G E+
Sbjct: 563  LFAAGQTKGIFQFEQPGAISLLNRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGLEQ 622

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + +E
Sbjct: 623  VELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAAEMHRMQE 682

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F   
Sbjct: 683  DFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAFFKAHYPDVFFDV 742

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA  F+ +  P S+N      K  D +I+  L  IKG+    A
Sbjct: 743  MLN------YSSSDYITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLPRDLA 796

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L N+  
Sbjct: 797  YWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLPNLFV 856

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            +A  +         ++FA    ++++          + + +FE EQ ++G   S HPL  
Sbjct: 857  FADEL--------GSLFADTTYSWTEA------QDFSDAEKFELEQSIIGVGLSDHPL-- 900

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                L K   + +         +  ++ A V + +  +T+KG  + ++  S+  K+ +  
Sbjct: 901  --VKLAKEADQPFSWISELTENSRAKILAQVQTIKTIRTKKGENMAFLQVSDTKKKLDVT 958

Query: 1031 FFP 1033
             FP
Sbjct: 959  LFP 961


>gi|281416111|ref|YP_003347847.1| gp197 [Mycobacterium phage ET08]
 gi|255927790|gb|ACU41411.1| gp197 [Mycobacterium phage ET08]
          Length = 1172

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 244/1107 (22%), Positives = 451/1107 (40%), Gaps = 112/1107 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H   S+L+G      +  +       ++AITD +++     F +   AAG++P++G 
Sbjct: 49   LHNHGETSILDGRSRPEEMAARAKECGDESVAITDHDDVGGHFRFQKACQAAGVKPVLGA 108

Query: 74   Q----LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            +    L+I        + + KT       IVLL     G + L  L S  Y  +Q  +  
Sbjct: 109  EQRWMLNIAD------SRERKTGASDSSHIVLLAENNIGLRNLWALSSLAYEPEQFYKKP 162

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-- 187
            ++    L +   +GL    G            +   +A +       +FGD  Y  L   
Sbjct: 163  QLDPGLLMQY-RDGLWASDGCMLTRFADYVVNDQEDLARQEWGVLLHIFGDHFYSELHTW 221

Query: 188  ----RHRGYDRYRESQV-------VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
                      +   +++       V+LA    +PLV  N++ +  E  ++ H  +  ++ 
Sbjct: 222  QFINPVSPEQQALNAKMSKINLAKVRLAKEMGVPLVVVNDAHYAHERQWQEHRAIWDMST 281

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF- 295
             +    +   R     ++ N  E+               E  R   +I       +    
Sbjct: 282  GSWKKDQHEERGHAADWMMNADEIRHYMGLHGVGTSVIEEAMRNSGWIADQCNAEIDGKL 341

Query: 296  -IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                       E+    R     G +       + KG     YRQRL++E  +I     +
Sbjct: 342  LAMPRLHATDAEDAAAFRRAIEEGFKRF----VVDKGLPEDVYRQRLEYEAKLIIDKNMA 397

Query: 355  GYFLIVADFIQWAK-------------KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            GYF +VAD++  A+                   GPGRGS  GS+  Y + IT IDP+++ 
Sbjct: 398  GYFNVVADYVLAARNGTYHQAITGDPKPKPCLCGPGRGSAGGSLVTYVMGITSIDPIKYD 457

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            L+FERF+NPDR   PD D+DF + ++  V +Y+  +YG   V  I T    + +  L+D+
Sbjct: 458  LMFERFINPDRPDFPDIDVDFQKSKKGLVKQYLGKRYGDNNVVSIGTRTHSRPRQMLQDL 517

Query: 462  GRALQMPYSQVDRL----------------CKLIPNDPAHPVSLQAIADDSRFREARLAD 505
             RA  +P+ ++ ++                 +L  ++                       
Sbjct: 518  CRAQGIPFGEMKKMIDLVEQVDQIAPFEEGMELPEDEDPPTWGEVLQEIGGELAPYAKKY 577

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL-SQLVPMYRDVRSDLPVTQFNMKWIE 564
            P +  L+   +++  + R    H AG+++   P+   L+P  R   +D+  TQF+M  +E
Sbjct: 578  PDLFNLM---EQMVNMVRGVGVHPAGVLVNTDPVFPGLIPTRRKGGADIRATQFDMYELE 634

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP-------------------FDD 605
            + G +K D L  K L +L  + D + +R                              +D
Sbjct: 635  ELGGVKDDLLANKGLDVLDIARDLIYERHGVWIDYDGFGFGIPEGAEKVIALNEERYLND 694

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI---VVYN 662
               Y  +    T G+FQ+ +    +     +P  + D+  L S+ RPG          Y 
Sbjct: 695  PAIYDQIDRGQTAGLFQVNTPAGTKLAMRFKPRSVVDMADLASINRPGVTRVPGLLDKYI 754

Query: 663  NRKNGKEKIVSIHPLIDPMLK-----ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
             R++G+E++   HPL++ +        T G+++YQEQ+++ A+ L+G++  EA+ LR+ +
Sbjct: 755  ERRHGREQVTYDHPLMESITGPSSSMNTYGILVYQEQLIRTAKELAGFTPGEAERLRKGI 814

Query: 718  GKKIKEEMDKQKERFISGA------SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            GKK  E +++ + +F+ G          G ++ +A  I++ L     Y FNKSH   YA+
Sbjct: 815  GKKKMEIINELEPKFLDGCMANSEFVNQGGTRKVADRIWQSLKAAGAYAFNKSHGVGYAL 874

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
               Q AW+K +Y  EF+   +   + + +K  +F ++ RQ    ++PP VN     F + 
Sbjct: 875  QPCQEAWVKHYYFDEFITGCL---VIHTDKTIRFLRECRQRKRAVLPPDVNQSGAGFTLT 931

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR-VLESLVFAGA 890
            D  I + L  I G+G      I+   A++PF  L+DF +R       ++ V+++L+  GA
Sbjct: 932  DEGIRFGLTDISGIGDAAMPDIL---ANRPFKDLDDFLARASKSGGAKKGVVDALIKVGA 988

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-LEKFSVENSS 949
             D  G  R  +L+ +   ++      K      +   A        K      ++ E+  
Sbjct: 989  FDFTGEHRQVMLEKVYRHRRGLSAPVKWAKMSLDEQVAEIAAKRRVKPEDYPVYNFEDPQ 1048

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
               + E  +LG + S  P+  Y  ++    I+   +      G+   +   +V  +  + 
Sbjct: 1049 FIHDLEVEMLGTFVSYDPMAKYARMIDGECIRHPMDYDDFEPGDRFCVGGKLVKARTHRQ 1108

Query: 1010 RKGSRIGWVTF----SEPAKEYEANFF 1032
            + G ++ ++       +    +E   F
Sbjct: 1109 KNGKQMAFLAVHWNEED----FEILAF 1131


>gi|158520254|ref|YP_001528124.1| DNA polymerase III, alpha subunit [Desulfococcus oleovorans Hxd3]
 gi|158509080|gb|ABW66047.1| DNA polymerase III, alpha subunit [Desulfococcus oleovorans Hxd3]
          Length = 1003

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 274/1033 (26%), Positives = 451/1033 (43%), Gaps = 88/1033 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L V S YSL+ G   +  +           +A+TDT+NL+    F        I P++
Sbjct: 2    IPLTVRSGYSLMWGTAPIKEVCRVARQQGYDRLALTDTDNLYGLWHFLDACRRNDITPVV 61

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +L                   T    VLLV   EGY+ L  L++  +L    K     
Sbjct: 62   GAELT---------------DPATTDRAVLLVKNPEGYKNLCRLITARHLEPDFK----- 101

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             L        +GL +LT                      L  + +  G  +Y      R 
Sbjct: 102  -LETAIARHADGLAVLTRNPC-----------------HLKQWHES-GVAVY-GAMPRRP 141

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ--KDRPRVT 249
                  S + Q A    +PLVAT  S FLS +D +AH +L A+  +T V +         
Sbjct: 142  MS--LSSPLCQTARYLNVPLVATPGSFFLSPQDMDAHRMLRAIDLNTTVDRLGPLEAAPG 199

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                   R            A    +   RR S  L    P     +         +  +
Sbjct: 200  EAWLASPREYEKRFE-----ACPEALANTRRLSETLTFTGPEFGLVMPPWESKTGTDPGS 254

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR  A  G + R  +         +   +RL+ EL++I +M+F+ YFL+V D ++ +  
Sbjct: 255  ALRQAAYRGAQARYGRDL------PEPVARRLEHELSIIIQMRFAAYFLVVQDIVRLS-- 306

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
               P   GRGSGA S+ AY L IT++ P++ +L FERFLNP R   PD D+DF  D RD 
Sbjct: 307  ---PRICGRGSGAASLVAYCLRITNVCPIKHNLYFERFLNPGRKDAPDIDVDFAWDERDT 363

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V+  V  ++G +  A +     +Q + A+R+V R   +  +++ R+ K +P       + 
Sbjct: 364  VLAAVFERFG-DHCAMVCNHVRMQPRMAVREVARVYGLTEAEISRVTKKMPWFWRQDTAG 422

Query: 490  QAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              I  +       R+  L  P    ++ +++K+ G  R+ S H  G++I  RP+ + VP+
Sbjct: 423  LDILRELSERPESRDLDLPAPWPG-IMAVARKICGAPRYLSVHPGGVIITPRPVCEYVPV 481

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
             R     + + Q+     E AGL+K D LG ++L +++ ++  L      +D S    +D
Sbjct: 482  ERAA-KGVRIIQWEKDQAEDAGLVKIDLLGNRSLAVIRDAIYNLRSNNHLLDESTWAPED 540

Query: 606  HE-TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
               T   ++   T+G F +ES   R   +  +    E ++   S+ RP   D I  Y  R
Sbjct: 541  DFATQEAVSQGKTMGCFYIESPATRLLQKKSRVGDFEHLVIHSSIIRPAANDYIQEYLRR 600

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             +G      IHPL+  +L ET G+++YQE V + A  ++G+S ++AD LR+ M KK K+ 
Sbjct: 601  LHGAS-WDPIHPLLADVLDETFGIMVYQEDVSRAAVSVAGFSHADADGLRKVMSKKDKDH 659

Query: 725  M-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +      RF  GA+KNG++      I+ ++  F+ Y F K H+A+YA +S+Q AW+KTHY
Sbjct: 660  VLADFYRRFADGAAKNGVTPEKIREIWRMMMSFSGYSFCKPHSASYARVSFQAAWLKTHY 719

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P  F+AA ++ +         +  +AR+  I I+ P VN   + ++   N I   L+A+ 
Sbjct: 720  PAAFMAAVISNQGG-FYSTFAYVSEARRSGITILAPDVNASDIRWQGNGNTIRVGLSAVG 778

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF--GYSRMQL 901
             +   T    +       F  LED+  RV     +    ++L+ +GA D    G SR  +
Sbjct: 779  HLSLKTMEKTLAHRKAARFTGLEDYMDRVRP---DEPEAQALIQSGAFDALCPGRSRSMI 835

Query: 902  LQSLDNIQKYAQWVE-KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
                     +A W   +   +    +F    G       +     E+   R+  E  VLG
Sbjct: 836  RWQ------WACWKNNRPPASSSPLLFDTAPGPVVPPPQI----TEDPLERYRQEFSVLG 885

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            F    HP+ +YK  L        +       G  + +A  +++ +  +T+ G  + ++TF
Sbjct: 886  FLCDTHPMTLYKTELEGRQTIKAKHLGRYA-GKRVCVAGWLITGKVVRTKNGDPMEFLTF 944

Query: 1021 SEPAKEYEANFFP 1033
             +    +EA FFP
Sbjct: 945  EDETDIFEATFFP 957


>gi|327469649|gb|EGF15118.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK330]
          Length = 1069

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 292/1023 (28%), Positives = 481/1023 (47%), Gaps = 98/1023 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 36   IQLDTKTVYSFMDSLVPIKKYVQKAKDLGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 95

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  L +   +                 + LL   ++GY+ L++ VS + ++ Q       
Sbjct: 96   GLDLSLIKAEKEL-------------HLRLLALDSQGYRNLMK-VSTLKMMGQKN----- 136

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                 Q +  +GL ++    +G  D                      G   YV +     
Sbjct: 137  -WEDFQHLF-KGLAVIVPAFNGVADLDL-------------------GLDFYVGVFPATP 175

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                              P +  +   +    D E   +L A+  +  +  ++   +   
Sbjct: 176  K------------QEFGRPTLPLHTVRYFDTGDLETLQMLRAIRENASL--REIGSLPNH 221

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +L     +   F          +E   R           LPR       + ++    EL
Sbjct: 222  EFLLTPDALAGAFKGTFPESLANLEKLVRHVHYDINRELKLPR------FNRERPAVEEL 275

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R ++ AGL+         +G   + Y++RLD EL VI +M F  YFLIV D +++ +   
Sbjct: 276  RERSEAGLKK--------RGLTGKLYQERLDQELAVIHQMGFDDYFLIVWDLLRFGRSQG 327

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E I
Sbjct: 328  YYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPEFI 387

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +      A
Sbjct: 388  RYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLT---SA 444

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+      
Sbjct: 445  YEKNMGFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPLKYG--E 502

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D ET  
Sbjct: 503  DMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIAEIDLEDAETLK 562

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+G E+
Sbjct: 563  LFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGLEQ 622

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM   +E
Sbjct: 623  VELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKSAAEMHHMQE 682

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F   
Sbjct: 683  DFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPDVFFDV 742

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA  F+ +  P S+N      K  D +I+  L  IKG+    A
Sbjct: 743  MLN------YSSSDYITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLPRDLA 796

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L N+  
Sbjct: 797  YWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLPNLFV 856

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            +A  +         ++FA    ++++          + + +FE EQ ++G   S HPL  
Sbjct: 857  FADEL--------GSLFADTTYSWTEA------QDFSDAEKFELEQSIIGVGLSDHPL-- 900

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                L K   + +         +  R+ A V + +  +T+KG  + ++  S+  K+ +  
Sbjct: 901  --VKLAKEADQPFSWISELTENSRARILAQVQTIKTIRTKKGENMAFLQVSDTKKKLDVT 958

Query: 1031 FFP 1033
             FP
Sbjct: 959  LFP 961


>gi|46200108|ref|YP_005775.1| DNA polymerase III alpha subunit [Thermus thermophilus HB27]
 gi|46197736|gb|AAS82148.1| DNA polymerase III alpha subunit [Thermus thermophilus HB27]
          Length = 2067

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 296/800 (37%), Positives = 422/800 (52%), Gaps = 70/800 (8%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAA----DQQPAIAITDTNNLFSALEFSQ 60
           + +   F HL  H+ +SLL+GA  L+++L  +      D  PA+A+TD  NLF A+EF +
Sbjct: 1   MGRKLRFAHLHQHTQFSLLDGAAKLSDLLKWVKETTPED--PALAMTDHGNLFGAVEFYK 58

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
           KA   GI+PI+G +  +  +       +GK        + LL     GYQ L+ L SR Y
Sbjct: 59  KATEMGIKPILGYEAYVAAESRFDR-KRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAY 117

Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
           L +   +  RI    L+E   EGLI L+G     I +    +   +AE RL  +  +F D
Sbjct: 118 L-EGFYEKPRIDREILRE-HAEGLIALSGCLGAEIPQFILQDRLDLAEARLNEYLSIFKD 175

Query: 181 RLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           R ++ +Q H   ++      + + A  + L +VATN+  ++ +ED  AH+VL+A+   + 
Sbjct: 176 RFFIEIQNHGLPEQKKVNEVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKST 235

Query: 240 VSQKDRPRVTPD-HYLKNRSEMVSIFSDLPE---ALENTVEIARRCSFILQVHAPILPRF 295
           +    R R   D  Y+K   EM ++F +        +NTVEIAR C+  L +   ++ R 
Sbjct: 236 LDDPGRWRFPCDEFYVKTPEEMRAMFPEEEWGDEPFDNTVEIARMCNVELPIGDKMVYR- 294

Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA--------------------- 334
           I +      + E   L      GL  R         Y                       
Sbjct: 295 IPRFPLPEGRTEAQYLMELTFKGLLRRYPDRITEGFYREVFRLLGKLPPHGDGEALAEAL 354

Query: 335 --------------------------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
                                     +    R  +EL+VI RM F GYFLIV D+I WA+
Sbjct: 355 AQVEREAWERLMKSLPPLAGVKEWTAEAIFHRALYELSVIERMGFPGYFLIVQDYINWAR 414

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
           +N + VGPGRGS AGS+ AYA+ IT+IDPLRF LLFERFLNP+R+SMPD D DF    RD
Sbjct: 415 RNGVSVGPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERD 474

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            VI+YV+ +YG ++VAQI T GSL +KAAL+DV R   +P+ + + L KLIP     P  
Sbjct: 475 RVIQYVRERYGEDKVAQIGTLGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKP 534

Query: 489 -LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
             +AI      R     DP V  +LE++ +LEGL RHAS HAAG+VI   PL+ LVP+ R
Sbjct: 535 LQEAIQVVPELRAEMEKDPKVREVLEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMR 594

Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606
           D +   PVTQ++M  +E  GL+K DFLGL+TLT L +    +        D   +P DD 
Sbjct: 595 D-QEGRPVTQYDMGAVEALGLLKMDFLGLRTLTFLDEVKRIVKASQGVELDYDALPLDDP 653

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
           +T+ LL+   T G+FQLES GM   L G++P   ED+IA++SLYRPGP+++I  Y  R +
Sbjct: 654 KTFALLSRGETKGVFQLESGGMTATLRGLKPRRFEDLIAILSLYRPGPMEHIPTYIRRHH 713

Query: 667 GKEKIVS---IHPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
           G E +      H    + P+L ET G+ +YQEQ+MQIA  ++GYSL EAD+LRR + +  
Sbjct: 714 GLEPVSYSEFPHAEKYLKPILDETYGIPVYQEQIMQIASAVAGYSLGEADLLRRCLAEGS 773

Query: 722 KEEMDKQKERFISGASKNGI 741
                   +R      + G+
Sbjct: 774 LVLDAATGQRVPIEKVRPGM 793



 Score =  254 bits (648), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 97/274 (35%), Positives = 146/274 (53%), Gaps = 12/274 (4%)

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAAAY+++SYQTA++K HYPVEF+AA +++E  + +K+ ++ +DAR   I+++PP VN 
Sbjct: 1662 SHAAAYSLLSYQTAYVKAHYPVEFMAALLSVERHDSDKVAEYIRDARAMGIEVLPPDVNR 1721

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVL 882
               DF V   +I + L+A+K VG   A  I+       P+ SL DF  R+D K LN+R L
Sbjct: 1722 SGFDFLVQGRQILFGLSAVKNVGEAAAEAILRERERGGPYRSLGDFLKRLDEKVLNKRTL 1781

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E L+ AGALD FG  R +LL SL+ + K+A    +   +    +F+  +     +  L +
Sbjct: 1782 EFLIKAGALDGFGE-RARLLASLEGLLKWAAENREKARSGMMGLFSEVE-----EPPLAE 1835

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLA 998
             +  +   R   E+  LG Y SGHP+  Y P LR+      EE           + + LA
Sbjct: 1836 AAPLDEITRLRYEKEALGIYVSGHPILRY-PGLRETATCTLEELPHLARDLPPRSRVLLA 1894

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             MV    +K T+ G  +     S+     EA  F
Sbjct: 1895 GMVEEVVRKPTKSGGMMARFVLSDETGALEAVAF 1928


>gi|55980149|ref|YP_143446.1| DNA polymerase III subunit alpha [Thermus thermophilus HB8]
 gi|55771562|dbj|BAD70003.1| DNA polymerase III alpha subunit [Thermus thermophilus HB8]
          Length = 2067

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 296/800 (37%), Positives = 422/800 (52%), Gaps = 70/800 (8%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAA----DQQPAIAITDTNNLFSALEFSQ 60
           + +   F HL  H+ +SLL+GA  L+++L  +      D  PA+A+TD  NLF A+EF +
Sbjct: 1   MGRKLRFAHLHQHTQFSLLDGAAKLSDLLKWVKETTPED--PALAMTDHGNLFGAVEFYK 58

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
           KA   GI+PI+G +  +  +       +GK        + LL     GYQ L+ L SR Y
Sbjct: 59  KATEMGIKPILGYEAYVAAESRFDR-KRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAY 117

Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
           L +   +  RI    L+E   EGLI L+G     I +    +   +AE RL  +  +F D
Sbjct: 118 L-EGFYEKPRIDREILRE-HAEGLIALSGCLGAEIPQFILQDRLDLAEARLNEYLSIFKD 175

Query: 181 RLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           R ++ +Q H   ++      + + A  + L +VATN+  ++ +ED  AH+VL+A+   + 
Sbjct: 176 RFFIEIQNHGLPEQKKVNEVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKST 235

Query: 240 VSQKDRPRVTPD-HYLKNRSEMVSIFSDLPE---ALENTVEIARRCSFILQVHAPILPRF 295
           +    R R   D  Y+K   EM ++F +        +NTVEIAR C+  L +   ++ R 
Sbjct: 236 LDDPGRWRFPCDEFYVKTPEEMRAMFPEEEWGDEPFDNTVEIARMCNVELPIGDKMVYR- 294

Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA--------------------- 334
           I +      + E   L      GL  R         Y                       
Sbjct: 295 IPRFPLPEGRTEAQYLMELTFKGLLRRYPDRITEGFYREVFRLLGKLPPHGDGEALAEAL 354

Query: 335 --------------------------QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
                                     +    R  +EL+VI RM F GYFLIV D+I WA+
Sbjct: 355 AQVEREAWERLMKSLPPLAGVKEWTAEAIFHRALYELSVIERMGFPGYFLIVQDYINWAR 414

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
           +N + VGPGRGS AGS+ AYA+ IT+IDPLRF LLFERFLNP+R+SMPD D DF    RD
Sbjct: 415 RNGVSVGPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERD 474

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            VI+YV+ +YG ++VAQI T GSL +KAAL+DV R   +P+ + + L KLIP     P  
Sbjct: 475 RVIQYVRERYGEDKVAQIGTLGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKP 534

Query: 489 -LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
             +AI      R     DP V  +LE++ +LEGL RHAS HAAG+VI   PL+ LVP+ R
Sbjct: 535 LQEAIQVVPELRAEMEKDPKVREVLEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMR 594

Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDH 606
           D +   PVTQ++M  +E  GL+K DFLGL+TLT L +    +        D   +P DD 
Sbjct: 595 D-QEGRPVTQYDMGAVEALGLLKMDFLGLRTLTFLDEVKRIVKASQGVELDYDALPLDDP 653

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
           +T+ LL+   T G+FQLES GM   L G++P   ED+IA++SLYRPGP+++I  Y  R +
Sbjct: 654 KTFALLSRGETKGVFQLESGGMTATLRGLKPRRFEDLIAILSLYRPGPMEHIPTYIRRHH 713

Query: 667 GKEKIVS---IHPL--IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
           G E +      H    + P+L ET G+ +YQEQ+MQIA  ++GYSL EAD+LRR + +  
Sbjct: 714 GLEPVSYSEFPHAEKYLKPILDETYGIPVYQEQIMQIASAVAGYSLGEADLLRRCLAEGS 773

Query: 722 KEEMDKQKERFISGASKNGI 741
                   +R      + G+
Sbjct: 774 LVLDAATGQRVPIEKVRPGM 793



 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 98/274 (35%), Positives = 147/274 (53%), Gaps = 12/274 (4%)

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAAAY+++SYQTA++K HYPVEF+AA +++E  + +K+ ++ +DAR   I+++PP VN 
Sbjct: 1662 SHAAAYSLLSYQTAYVKAHYPVEFMAALLSVERHDSDKVAEYIRDARAMGIEVLPPDVNR 1721

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVL 882
               DF V   +I + L+A+K VG   A  I+       P+ SL DF  R+D K LN+R L
Sbjct: 1722 SGFDFLVQGRQILFGLSAVKNVGEAAAEAILRERERGGPYRSLGDFLKRLDEKVLNKRTL 1781

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            ESL+ AGALD FG  R +LL SL+ + K+A    +   +    +F+  +     +  L +
Sbjct: 1782 ESLIKAGALDGFGE-RARLLASLEGLLKWAAENREKARSGMMGLFSEVE-----EPPLAE 1835

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES----VATIRGNNIRLA 998
             +  +   R   E+  LG Y SGHP+  Y P LR+      EE           + + LA
Sbjct: 1836 AAPLDEITRLRYEKEALGIYVSGHPILRY-PGLRETATCTLEELPHLARDLPPRSRVLLA 1894

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             MV    +K T+ G  +     S+     EA  F
Sbjct: 1895 GMVEEVVRKPTKSGGMMARFVLSDETGALEAVAF 1928


>gi|326404073|ref|YP_004284155.1| error-prone DNA polymerase [Acidiphilium multivorum AIU301]
 gi|325050935|dbj|BAJ81273.1| error-prone DNA polymerase [Acidiphilium multivorum AIU301]
          Length = 1037

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 252/1028 (24%), Positives = 414/1028 (40%), Gaps = 93/1028 (9%)

Query: 20   YSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDM 79
            +S LEGA     ++D+       A+ I D N +   +     A   G++ ++G +L    
Sbjct: 13   FSFLEGASHPQELVDQALYLGHAALGIADRNTVAGVVRAHVAAKQGGLRLLVGSRL---- 68

Query: 80   QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEI 139
                         F   P ++      EG+ RL  L+S        K   R+ L  L++ 
Sbjct: 69   ------------GFEDGPDVIAYPRDREGWGRLCRLLSLGKGRAA-KGGCRLRLDDLEDH 115

Query: 140  GTE-GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRES 198
                 LI++                   A    L     FG  +++   R    D     
Sbjct: 116  AAGMALIVMPPPW------------PDAAFAASLDRISGFGAPVWLGAARRYAPDDAARL 163

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD-RPRVTPDHYLKNR 257
            + +         LVA N+ L+ +       DV+  + H   +++   R     + YLK  
Sbjct: 164  EALAALAGRRRRLVAVNDVLYHAPSRRPLQDVMRCIRHGCTIAEAGLRLEPHGERYLKPA 223

Query: 258  SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
             EM  +F     A+    EI     F L       P           +  +  L + A A
Sbjct: 224  DEMARLFRGHEAAIAAQAEILDAVGFTLGDIRYEYPDEPVPPG----RTPDAHLADLAWA 279

Query: 318  GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
            G  +R   G              +  EL++IAR+ ++ YFL V D + +A++  I    G
Sbjct: 280  GAAIRYPGGV------PVAIAATIRRELDLIARLGYARYFLTVNDIVGFARRQGIL-CQG 332

Query: 378  RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
            RGS A S   YAL IT +DP    LLFERF++ +R   PD D+DF  +RR+EVI+Y+  +
Sbjct: 333  RGSAANSAVCYALGITAVDPAEIDLLFERFVSAERGEPPDIDVDFEHERREEVIQYIYGR 392

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            YG  R A   T    ++++A+RDVG+AL +  + ++ L     N      S   + +   
Sbjct: 393  YGRARAAIAATVIHYRSRSAIRDVGKALGLDAATIETLAAQSWNPGDALWSDPRLRE--- 449

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
                  A P + R + ++++L  L RH S H  G V+    L ++VP+           +
Sbjct: 450  -AGLDPAAPDLRRAIGLARELVDLPRHLSQHVGGFVLTRTRLDEIVPVGPAAMPGRSFIE 508

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGT 617
            ++   I+   L+K D L L  LT ++K    L       DL+ +P +D   Y +L+    
Sbjct: 509  WDKDDIDALKLMKVDVLALGMLTCIRKCFAML----GIADLADVPREDPRVYDMLSRGDA 564

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIH 675
            LG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+    R+NG E      
Sbjct: 565  LGVFQVESRAQMNMLPRLRPRAFYDLVIEVAIVRPGPIQGDMVHPYLRRRNGLEAPDMPS 624

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEEMDKQKERFIS 734
            P +  +L +T GV ++QEQ M+IA   +G++  EA+ LRRAM        +++   R I 
Sbjct: 625  PALRSVLGKTLGVPLFQEQAMRIAIEAAGFTPGEANELRRAMATFRSPGTIERFFNRMIE 684

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            G   +G  +  A   F  +  F  YGF +SHAA++A + Y +AW+K ++P EF AA +  
Sbjct: 685  GMIASGHERDFAERCFRQIEGFGTYGFPESHAASFAHLVYVSAWLKCYHPAEFAAALLNA 744

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
            +     +  +  +DAR+  I +    V     D  V    +   L  I+G     A  I 
Sbjct: 745  QPMGFYQPAQIVRDAREHGIAVRAADVAASSWDCTVESGALRLGLRMIRGFRADWAARID 804

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESL--------VFAGALDCFGYSRMQLLQSLD 906
               A+           R+         L SL          AGAL   G  R   L    
Sbjct: 805  ALRAEG----------RICL-----PALASLPTAALEALAEAGALRSLGMDRRTALWQAG 849

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             ++  A             + +                          + R  G     H
Sbjct: 850  LVEPPAS----------FPLLSLAAPPRGT----PDLPAMRPEDHVAADYRATGLSLRAH 895

Query: 967  PLDVYKPILRKMGIKGYEESVA-TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            P+ + +   R  G+   +   A    G+ + LA +V  +Q+  + +G+   ++T  +   
Sbjct: 896  PMGLLRGHPRLEGMMTCQAVTAFAADGSIVDLAGIVTIRQRPGSARGT--VFITIEDETG 953

Query: 1026 EYEANFFP 1033
                   P
Sbjct: 954  IANLIVRP 961


>gi|38233219|ref|NP_938986.1| error-prone DNA polymerase [Corynebacterium diphtheriae NCTC 13129]
 gi|71151822|sp|Q6NJ04|DNAE2_CORDI RecName: Full=Error-prone DNA polymerase
 gi|38199478|emb|CAE49129.1| Putative DNA polymerase [Corynebacterium diphtheriae]
          Length = 1039

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 266/1030 (25%), Positives = 437/1030 (42%), Gaps = 98/1030 (9%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             S  F  L   S Y  L GA S  +++         A+A+ D +  + A+EF++ A  +G
Sbjct: 49   SSQPFAELHAASYYHFLHGANSPQDMVAAACQQGMSALALIDRDGFYGAMEFAEAAATSG 108

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
            +  + G +L +                     + +L    EGY  L  L+++  +     
Sbjct: 109  LPTVFGAELTLAPDRI----------------LTVLARGVEGYTSLSRLITQARMRGSKD 152

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
             ++   L+ + E   +              R    +S    E  L  F   + D + +  
Sbjct: 153  VTIYPPLAEIVESMGKNC------------RFLLNHSWCTDESLLEIF---YPDTVVLEY 197

Query: 187  QRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                  +     +++  +   +    +A+     +            A+A    + Q   
Sbjct: 198  GVTMRPEDVDHHELLDSIRQRYGFMAIASAVPSAVDRVSARVAGAKQALAQRESLPQAT- 256

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            PR+ P      R       S   + L+ +VE+AR C+F L + AP LPR+          
Sbjct: 257  PRLHPMGSTWMRGGDELAGSVDKQLLDASVEVARDCAFALDLVAPNLPRWPVP------- 309

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               +E+ +          A+            R ++  EL VI  + F GYFLIV D + 
Sbjct: 310  ---DEMAHLTGLVNARFDARYRGRSEDVKNQARAQIHHELAVIKELGFPGYFLIVDDIVS 366

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +   NNI    GRGS A SV  + L IT+++P+   LLFERFL+ DR   PD DID    
Sbjct: 367  FCHTNNIL-CQGRGSAANSVVCFVLGITNVEPISTGLLFERFLSRDREGPPDIDIDIESG 425

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RRD VI YV + YG +  AQ+    + + KAALRD  RAL  P +  D         P  
Sbjct: 426  RRDAVITYVYDTYGRDNAAQVANVITYRTKAALRDAARALGYPNTSADAWSTNPDEAPN- 484

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                                     +  ++++L+G  RH   HA G+VI DRP++ +VP 
Sbjct: 485  ------------------------AVRFLAEQLKGQPRHLGIHAGGMVICDRPIADVVPT 520

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFD 604
                +    V Q++ +    AGL+KFD LGL  L  L   +D + +     ++L  I   
Sbjct: 521  EWARKHGRSVVQWDKESCASAGLVKFDLLGLGMLEALHHMIDLVVETTGTTINLWEIDLA 580

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYN 662
            + E Y +L+    +G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y 
Sbjct: 581  EPEIYTMLSNGDAVGVFQVESRAQLATLPRLRPREFFDLVVEVALVRPGPIQGGSVHPYI 640

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKI 721
             R+NG E +   HP+++  L++T GV ++QEQ+M IA   +G+S  EAD LRRAM  ++ 
Sbjct: 641  RRRNGLEAVTYEHPILERSLRKTLGVPLFQEQLMHIAVDAAGFSGGEADELRRAMGSRRS 700

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             + M++ K RF +G  +N I+  IA  ++  +  F  YGF +SH+ ++A + Y +AW K 
Sbjct: 701  VDTMNRMKRRFFAGLRRNNITGDIAGILWNKIVAFVAYGFPESHSQSFASLVYFSAWFKY 760

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            H+P EF    +  +       +    DAR+  + I+  ++N   V+  V +  I   L  
Sbjct: 761  HHPAEFYVGLLRAQPMGFYSPQSLLADARRKELTILSHNINKSQVEATVENGAIRLGLNM 820

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKGVG T A  I+   A  P+  + D   R     L   V+E+L  +GAL+  G  R Q 
Sbjct: 821  IKGVGKTEAEAIV---AHAPYRDIADLSRRA---GLGVAVIEALARSGALETLGVGRRQA 874

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L            +    +                 ++       N+      +  + G 
Sbjct: 875  LWQAGAAATEKAAMLPGLSM----------------VSAPSLPGMNAFELIVADIAMTGV 918

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
              S +P+ + +  L   G+    E +       I LA +V  +Q+ +T  G  + ++   
Sbjct: 919  S-SENPVALLRRQLELRGVIPASELLNCENARRILLAGVVTHRQRPQTAAG--VTFLGLE 975

Query: 1022 EPAKEYEANF 1031
            +         
Sbjct: 976  DETGLANVVV 985


>gi|327489345|gb|EGF21138.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK1058]
          Length = 1069

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 290/1023 (28%), Positives = 481/1023 (47%), Gaps = 98/1023 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 36   IQLDTKTVYSFMDSLVPIKKYVQKAKDLGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 95

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  L +   +                 + LL   ++GY+ L++ VS + ++ Q       
Sbjct: 96   GLDLSLIKAEKEL-------------HLRLLALDSQGYRNLMK-VSTLKMMGQKN----- 136

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                 Q +  +GL ++     G  D                      G   Y+ +     
Sbjct: 137  -WEDFQHLF-KGLALIVPAFDGVADLDL-------------------GMDFYIGVFPATP 175

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                              P +  +   +    D E   +L A+  +  +  ++   +   
Sbjct: 176  Q------------QEFGRPTLPLHTVRYFDRGDLETLQMLRAIRENASL--REIGSLPNH 221

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +L     +   F +        +E   R           LPR       + ++    EL
Sbjct: 222  EFLLAPDALAGAFKETFPESLANLEKLVRHVHYDINRELKLPR------FNRERPAVEEL 275

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R ++ AGL+ R        G   + Y++RLD EL VI +M F  YFLIV D +++ +   
Sbjct: 276  RERSEAGLKKR--------GLTGKLYQERLDQELAVIHQMGFDDYFLIVWDLLRFGRSQG 327

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E I
Sbjct: 328  YYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPEFI 387

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +      A
Sbjct: 388  RYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLT---SA 444

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+      
Sbjct: 445  YEKNMGFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPLKYG--E 502

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D ET  
Sbjct: 503  DMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIAEIDLEDAETLK 562

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E  G    L+ +QP   E+++A  SL RPG  D I  +  RK+G E+
Sbjct: 563  LFAAGQTKGIFQFEQPGAISLLKRVQPVYFEEVVATTSLNRPGASDYIDNFVKRKHGLEQ 622

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + +E
Sbjct: 623  VELIDDSLTDILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKSAAEMHRMQE 682

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F   
Sbjct: 683  DFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPDVFFDV 742

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA  F+ +  P S+N      K  D +I+  L  IKG+    A
Sbjct: 743  MLN------YSSSDYITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLPRDLA 796

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L N+  
Sbjct: 797  YWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLPNLFV 856

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            +A  +         ++FA    ++++          + + +FE EQ ++G   S HPL  
Sbjct: 857  FADEL--------GSLFADTTYSWTEA------QDFSDAEKFELEQSIIGVGLSDHPL-- 900

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                L K   + +         +  ++ A V + +  +T+KG  + ++  S+  K+ +  
Sbjct: 901  --VKLAKEADQPFSWISELTENSRAKILAQVQTIKTIRTKKGENMAFLQVSDTKKKLDVT 958

Query: 1031 FFP 1033
             FP
Sbjct: 959  LFP 961


>gi|55823117|ref|YP_141558.1| DNA polymerase III DnaE [Streptococcus thermophilus CNRZ1066]
 gi|55739102|gb|AAV62743.1| DNA polymeraDNA polymerase III alphase III alpha subunit
            [Streptococcus thermophilus CNRZ1066]
          Length = 1036

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 281/1025 (27%), Positives = 478/1025 (46%), Gaps = 100/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   S YS ++  + LN  + +       +I + D +NL++A  F+Q A   G++P+
Sbjct: 2    FAQLDTKSVYSFMDSVVDLNTYVKRAKELGYQSIGLMDRDNLYAAYHFAQLAIRNGLRPL 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + ++  +                    LL    +GY+ LI+L +   L    ++   
Sbjct: 62   IGTEANLFYEGRKIPFR-------------LLAKNNQGYKNLIKLATE--LSSGQRE--- 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               ++  +   + + ++          +                    G  +++ +   R
Sbjct: 104  --FTYFSDYLND-IALILPSEDWEPGMSL-------------------GSEVFIGV---R 138

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D              + P+V  +   +    D      L A++ +  +S+     +  
Sbjct: 139  PEDA---------GKEFDYPVVPLHTVRYFENADRSTIQTLHAISQNVSLSEVSICPMNQ 189

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              +            ++ EA     E     + ++   +      ++    + +    ++
Sbjct: 190  LLF---------SAKEMEEAYSKLPEALNNLNQLVSDVSYQFDTNLKLPRFNREMPAVDQ 240

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  A +G          +K      Y++RLD EL++I +M F  YFLIV D +++ +  
Sbjct: 241  LRQLAQSG--------LDSKALREPAYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSR 292

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ AY L IT IDP++  LLFERFLN +R SMPD DID     R E 
Sbjct: 293  GYYMGMGRGSAAGSLVAYVLDITGIDPVKNDLLFERFLNKERYSMPDIDIDLPDIYRSEF 352

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV+++YG +  AQI+TF +  AK A+RDV +       ++ +L K I           
Sbjct: 353  LHYVRDRYGSKHSAQIVTFSTFGAKQAIRDVFKRFGAKEFELSQLSKKISF---RDTLTT 409

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+         R  EI++ +EG  R  S HAAGIV+ D  L+  +P+     
Sbjct: 410  VYEKNMSFRQLINQRQEFQRAFEIAKAIEGQPRQTSIHAAGIVMSDDDLTNHIPL--KAG 467

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFLAQRGVKVDLSLIPFDDHETY 609
             D+ VTQ++   +E  GL+K DFLGL+ LT +QK       ++G+ +D+  I  +D +T 
Sbjct: 468  EDMMVTQYDASAVEANGLLKMDFLGLRNLTFVQKMKEKLEEEQGIAIDIKSIDLEDSQTL 527

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +  T GIFQ E +G    L+ ++P   E+++A  SL RPG  D    +  RK GKE
Sbjct: 528  ALFASGKTKGIFQFEQAGAINLLKRIKPAKFEEVVATTSLNRPGASDYTDNFVARKYGKE 587

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  I P++ P+L+ T G+++YQEQVMQIAQ+ +G+SL +AD+LRRAM KK   EM K  
Sbjct: 588  KVDLIDPVVAPILEPTYGIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSKKDANEMSKMS 647

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E+F+ G+ + G    +A  +F ++ KFA YGFNKSHA AY+ +++Q A+ KTHYP  F  
Sbjct: 648  EQFMEGSRQLGRDPQVAKRLFSMITKFAGYGFNKSHAYAYSALAFQLAYFKTHYPQIFYD 707

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +            + +DA +    +    +N      K+ D +I   L  IKG+    
Sbjct: 708  VMLN------YSSSDYIRDAIENGFSLASLDINRIPYMDKISDGKIVLGLKTIKGLPRDF 761

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            A  I+E    +  + S+EDF +R+ SK     +L  L+  G  D F  +R +++ +L N+
Sbjct: 762  ALWIIEDRQQNGKYISIEDFLTRIPSKYQKVDILTPLIQIGLFDRFEPNRQKIIGNLSNL 821

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +   +         ++FA    ++ +          + + R+  EQ +LG   S HPL
Sbjct: 822  FTFVNEL--------GSLFAESSYSWVEY------EDYSQTERYSIEQDLLGVGLSTHPL 867

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                 + +KM  + Y+        +   +   + S +  +T+KG ++ +++  +   + +
Sbjct: 868  ----HLAQKMASRPYQPISELTLNSKATVLVQLESVRIIRTKKGDQMAFLSVFDGVNKLD 923

Query: 1029 ANFFP 1033
               FP
Sbjct: 924  VTLFP 928


>gi|319442936|ref|ZP_07992092.1| error-prone DNA polymerase [Corynebacterium variabile DSM 44702]
          Length = 1080

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 249/1051 (23%), Positives = 424/1051 (40%), Gaps = 104/1051 (9%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              +  F  L    SY+ L GA   ++++         A+A+ D +  + A  F+  A   
Sbjct: 56   SSTTPFAELHAAGSYNFLRGAGEPDDMVATARRLGLTALALVDRDGFYGAARFATAAAEQ 115

Query: 66   GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G+  + G +L +                     + +L    EGY+RL  +++  +L   G
Sbjct: 116  GMPTVFGAELSL--------------GGTGRAPLTVLCRGQEGYRRLSHVLTDAHLGTDG 161

Query: 126  KQSVRI----CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-D 180
             +         L  L        ++L    +                  +      FG  
Sbjct: 162  HRDKETLTYPDLPTLAAQADGHWLVLIDHRN---------------RDAVSRIIDAFGTA 206

Query: 181  RLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
               + LQ      D  R + +  LA    L  + +  +   +           A+     
Sbjct: 207  HCVIELQLTMSPADADRNAALHDLAVARGLREIVSTAATCPTPASSRLAGAKAALHDRLD 266

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            V               +  E +   +   + L   V  +   +        ++   +   
Sbjct: 267  VHDAAPVTHPLGGSWLHSGEEMVAMAGDCDWLRQAVATSVDVAAECTFTLNLVAPELPHA 326

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   +   L      G E R                + +D EL VI  + F GYFLI
Sbjct: 327  DVPEGYTDMGWLVELTRLGGEERYG-----TRATNPRAWEVIDHELEVIEGLGFPGYFLI 381

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
            V D + + +++ I    GRGS A S   +AL IT++D +   LLFERFL+P+R   PD D
Sbjct: 382  VHDIVDFCRRSGI-FCQGRGSAANSAVCFALGITNVDAVAADLLFERFLSPERDGPPDID 440

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            +D    RR+EVI+YV  +YG +  AQ+    + + K ALRD  RAL     +VD   + +
Sbjct: 441  LDIESTRREEVIQYVYRQYGRDNAAQVANVITYRRKGALRDAARALGHDPGRVDAWSRRV 500

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             + PA                          + +++ +L    RH   H+ G+VI DRP+
Sbjct: 501  EDPPA-------------------------VVTDLASQLIDQPRHLGIHSGGMVICDRPV 535

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDL 598
            + +VP+    ++D  V Q++       GL+KFD LGL  L  L   +D + +    +V+L
Sbjct: 536  ADVVPVEWARKTDRSVVQWDKDDCAAVGLVKFDLLGLGMLEALHHCVDLVEETTGSRVEL 595

Query: 599  SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID-- 656
              +   D E Y +L+    +G+FQ+ES      L  ++P    D++  VSL RPGPI   
Sbjct: 596  WQLTPTDPEVYAMLSRADAVGVFQVESRAQLATLPRLKPRTFYDLVVEVSLIRPGPIQGG 655

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            ++  Y  R+NG+E++   HP ++P+L  T G+ ++QEQ+MQ+A + +G+S +EAD LRRA
Sbjct: 656  SVHPYIRRRNGEEEVTYDHPCLEPVLARTLGIPLFQEQLMQLAVVAAGFSPAEADTLRRA 715

Query: 717  MGKKIKEEMDKQKERFI--SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            MG K   E             A  NG+   +A  ++E +  FA YGF +SHA ++A + Y
Sbjct: 716  MGSKRSPEKMAAMRSRFLAGCAELNGLVGEVAERLWEKIIAFASYGFPESHAQSFASLVY 775

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-- 832
             +AW K H+P EF  A +  +       +    DAR+  + ++P  VN   V+  V    
Sbjct: 776  FSAWFKCHHPAEFCVALLRAQPMGFYSPQSLISDARRHGVPVLPVDVNVSGVEAGVEKVE 835

Query: 833  -----NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886
                   I   LA+++G+G+  A  ++EA      F ++ D         ++R  + +L 
Sbjct: 836  DAGDAWAIRPGLASVRGLGSEAASDLVEARGRVGMFRTVADLSREAGL-GVDR--VVALA 892

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             AGA D  G +R Q + +               T +   +      +             
Sbjct: 893  RAGACDSLGLTRRQAVWAAGQA----------ATERPGMLPGTSVAST------PALPGM 936

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRK----MGIKGYEESVATIRGNNIRLAAMVV 1002
            ++      +    G    GHP+ + +  L        +      ++   G  IR+A +V 
Sbjct: 937  SAFELAAADIAATGVTTDGHPVRLLRERLDAWPGPFPVVPASSLLSVEDGRRIRVAGVVT 996

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +Q+  T  G  + ++   +          P
Sbjct: 997  HRQRPMTAGG--VTFLGMEDETGLVNVMVSP 1025


>gi|324990960|gb|EGC22895.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK353]
          Length = 1042

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 287/1023 (28%), Positives = 482/1023 (47%), Gaps = 98/1023 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 9    IQLDTKTVYSFMDSLIPIKKYVQKAKDLGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 68

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +L +                     + LL   ++GY+ L++ VS + ++ Q       
Sbjct: 69   GLELSL-------------IKAEQELHLRLLALDSQGYRNLMK-VSTLKMMGQKN----- 109

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                 Q +  +GL ++     G  D                      G   YV +     
Sbjct: 110  -WEDFQHLF-KGLAVIVPAFDGVADLDL-------------------GLDFYVGVFPATP 148

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                              P +  +   +    D E   +L A+  +  + +         
Sbjct: 149  Q------------QEFGRPTLPLHTVRYFDRGDLETLQMLRAIRENASLREIG------- 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
              L N   +++  +     +E   E       +++     + R ++    + ++    EL
Sbjct: 190  -SLPNHEFLLAPDALAGAFMETFPESLANLEKLVRDVHYDINRELKLPRFNRERPAVEEL 248

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
              ++ AGL+ R        G   + Y++RLD EL VI +M F  YFLIV D +++ +   
Sbjct: 249  LERSEAGLKKR--------GLTGKLYQERLDQELAVIHQMGFDDYFLIVWDLLRFGRSQG 300

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E I
Sbjct: 301  YYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPEFI 360

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +      A
Sbjct: 361  RYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLT---SA 417

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+      
Sbjct: 418  YEKNMAFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPLKYG--E 475

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +   ++    ++++ I  +D  T  
Sbjct: 476  DMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLEKYKVDIEIAEIDLEDANTLK 535

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+G E+
Sbjct: 536  LFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGLEQ 595

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + +E
Sbjct: 596  VELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKSAAEMHRMQE 655

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F   
Sbjct: 656  DFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPDVFFDV 715

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA  F+ +  P S+N      K  D +I+  +  IKG+    A
Sbjct: 716  MLN------YSSSDYITDALSFDFETAPLSINNIPYHDKFQDKKIFLGMKNIKGLPRDLA 769

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L N+  
Sbjct: 770  YWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLPNLFV 829

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            +A  +         ++FA    ++++          + + +FE EQ ++G   S HPL  
Sbjct: 830  FADEL--------GSLFADTTYSWTEA------QDFSDAEKFELEQSIIGVGLSDHPL-- 873

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                L K   + +         +  R+ A V S +  +T+KG  + ++  S+  K+ +  
Sbjct: 874  --VKLAKEADQPFSWISELTENSRARILAEVQSIKTIRTKKGENMAFLQVSDTKKKLDVT 931

Query: 1031 FFP 1033
             FP
Sbjct: 932  LFP 934


>gi|85704565|ref|ZP_01035667.1| DNA polymerase III, alpha subunit [Roseovarius sp. 217]
 gi|85670973|gb|EAQ25832.1| DNA polymerase III, alpha subunit [Roseovarius sp. 217]
          Length = 956

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 238/1001 (23%), Positives = 403/1001 (40%), Gaps = 88/1001 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F  L   S+++ L GA      + + A      +AI D N++   +     A        
Sbjct: 3   FAELSATSNFTFLTGASHPEEYIRRAATLGLSGVAIADVNSVAGIVRAHAAAR------- 55

Query: 71  IGCQLDIDMQDN-------------------------LKMTNQGKTPFPTVPSIVLLVST 105
              ++  ++ +                           ++    +        I  L   
Sbjct: 56  ---EITREVAERQALEARQGPIGPPAPRPAPPDWANCPRLIPAARLVLREGIEITALPEN 112

Query: 106 AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
             G+  L  L+S        K +  + L+ +   G EGL +L              + ++
Sbjct: 113 RVGWASLCRLISLGRQC-APKGACDLGLADVLA-GAEGLHLL-----------LHPDPAR 159

Query: 166 VAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED 224
               ++      F DRL++ L  H  G D  R  ++ +LA    LP +A    L      
Sbjct: 160 AWVSQVRPLVARFADRLHLVLSPHYDGRDPARFDRLTELAARLGLPTIAAAAPLMHRGHR 219

Query: 225 YEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
               DVL A+     V    R      +  L++ +EM  ++     A+E   ++A R  F
Sbjct: 220 RRLADVLSAIRLGVTVDALGRHALCNAEQRLRSEAEMRHLYRGHEAAVERASDLAARLGF 279

Query: 284 ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            L        R+         +     LR  A+ GL+ R   GA      +   R  L+ 
Sbjct: 280 SLD-----ALRYDYPSEATNGETPSQRLRRLALEGLDWRYPDGA------SDRVRGMLEH 328

Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
           EL +IA++++  YFL V D + +A+   I    GRGS A SV  Y L +T + P   +++
Sbjct: 329 ELTLIAKLRYEPYFLTVNDVVAFARSRGIL-CQGRGSAANSVVCYCLGVTSVSPEIGTMV 387

Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
           FERF++  R   PD D+DF  +RR+EVI+++  +YG  R     T    + K A+R+VGR
Sbjct: 388 FERFVSEARDEPPDIDVDFEHERREEVIQWIYERYGRHRAGLCATVIHYRTKRAIREVGR 447

Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
           A+ +    +  +   I               +               L+   +++ G  R
Sbjct: 448 AMGLTEDILAAMASQIWGHGGEGALDPLRLREIGLDPRNRRLAMTLGLI---REIIGFPR 504

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
           H S H  G VI +  L +LVP+     ++  V  ++   I+  G++K D L L  LT ++
Sbjct: 505 HLSQHVGGFVITEGRLDELVPIENASMAERTVICWDKDDIDTLGILKVDVLALGMLTCIR 564

Query: 584 KSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
           K+ D L Q RG +  L+ +P +D + Y +L+   +LG+FQ+ES      L  M+P    D
Sbjct: 565 KAFDLLVQYRGTRYSLATLPPEDAQVYEMLSRADSLGVFQVESRAQMNFLPRMRPRTFYD 624

Query: 643 IIALVSLYRPGPIDNIVVYNNRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
           ++  V++ RPGPI   +V+   +    +  +      +  +L +T GV ++QEQ MQIA 
Sbjct: 625 LVIQVAIIRPGPIQGDMVHPFIRRRNGEEAVSFPSDDLGRVLGKTLGVPLFQEQAMQIAI 684

Query: 701 LLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
           + +G++  EAD LRR++    K   + + + RF+ G   NG     A   F  +  F  Y
Sbjct: 685 IGAGFTPEEADRLRRSLATFKKHGNVSEFRNRFLCGMRANGYDAEFAERCFSQIEGFGSY 744

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
           GF +SHAA++A + Y +AW+K H+P  F  A +  +        +  +DAR   + + P 
Sbjct: 745 GFPESHAASFAHLVYASAWIKCHHPAIFACALLNSQPMGFYAPAQIVRDARDHGVTVRPV 804

Query: 820 SVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
            +N    D  +  +      +      IKG+    A  I  A  +  +   ++   R   
Sbjct: 805 CINASYWDNTIEPDRQGRLALRLGFRQIKGIAQDEADWIAAARGNG-YTGPDEVWRRA-- 861

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
             +    L  L  A A    G SR   L     I          + +    +FA +    
Sbjct: 862 -GVPSAALTRLAEADAFAALGLSRRDALWQARAI----------QADTPLPLFAQDMDGE 910

Query: 935 SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
                       +       +   L      HPL + + IL
Sbjct: 911 VIAEPAAHLPRMSLGEEVVEDYIALRLSLRSHPLALLRHIL 951


>gi|153834883|ref|ZP_01987550.1| putative DNA polymerase III, alpha subunit [Vibrio harveyi HY01]
 gi|148868701|gb|EDL67780.1| putative DNA polymerase III, alpha subunit [Vibrio harveyi HY01]
          Length = 1024

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 242/1037 (23%), Positives = 426/1037 (41%), Gaps = 83/1037 (8%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA--CAAGI 67
            S+  L   S++S L GA     ++ + A  +  AIAITD  ++   ++           I
Sbjct: 2    SYAELFCQSNFSFLTGASHAEELVLQAAFYRYQAIAITDECSVAGVVKAHATIEQHKLDI 61

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + I+G    ++ +                  +VLL    + Y  L  +++      + K 
Sbjct: 62   KQIVGSMFWLNDE----------------CQVVLLCPCRKAYAELCRIITNARRRSE-KG 104

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            S ++    L  +    ++ L                 +         ++    RL+V +Q
Sbjct: 105  SYQLSEWDLMSVRHCFVLWLP-------------THQESDHYWGRWLQQHHAHRLWVAIQ 151

Query: 188  RH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            RH  G D    +    LA   +LP+ A    L  + E      VL AV H   V +    
Sbjct: 152  RHLGGDDDAYTTHCELLANEFQLPITACGGVLMHAVERLPLQHVLTAVKHGCSVDKLGFG 211

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
            R++           +S             E +   + + +     L      E       
Sbjct: 212  RLSNAERALRPLNKLSRIYKSEWL-----EESTHIADLCEFKLSDLKYEYPTELIPNGYT 266

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              + LR     G ++R  +G         D  Q ++ EL +I  +++  YFL + D + +
Sbjct: 267  PTSYLRMLVERGKKLRFPEG------IPADIHQTIENELALIEELEYHYYFLTIHDIVMF 320

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            AK+  I    GRGS A SV  Y L IT +DP + S+LFERF++ +R   PD D+DF  +R
Sbjct: 321  AKQQGILY-QGRGSAANSVVCYCLEITAVDPRQISVLFERFISREREEPPDIDVDFEHER 379

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            R+EVI+Y+  KYG ER A   T  S + K+A+R+VG+AL +  +Q+D   K +       
Sbjct: 380  REEVIQYIYKKYGRERAALAATVISYRFKSAVREVGKALGIEETQLDFFIKNVNRRDRSQ 439

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                 I +       +       + +++  ++ G  RH S H  G VI   PL +LVP+ 
Sbjct: 440  GWQAQIIE----LGLQPESLKGQQFIQLVNEIIGFPRHLSQHVGGFVISSGPLYELVPVE 495

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK---VDLSLIPF 603
                 D  + Q++   +E   L+K D L L  L  ++K    + +   +   +       
Sbjct: 496  NASMEDRTIIQWDKDDLESLKLLKVDVLALGMLNAIRKCFQLVEKHHQRSLSIAEITRLQ 555

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN- 662
            DD   Y ++    T+G+FQ+ES      L  ++P    D++  +++ RPGPI   +V+  
Sbjct: 556  DDPHVYRMIQKADTVGVFQIESRAQMSMLPRLKPARYYDLVVQIAIVRPGPIQGDMVHPF 615

Query: 663  -NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R+NG+E I      +  +L+ T GV I+QEQV+++A + +G+S  EAD LRRAM    
Sbjct: 616  LKRRNGEEPISYPSEEVKSVLERTMGVPIFQEQVIKLAMVAAGFSGGEADQLRRAMAAWK 675

Query: 722  KEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            K     K K + I G  + G     A  IF+ +  F +YGF +SH+A++AV++Y +AW+K
Sbjct: 676  KNGDLAKFKPKLIDGMRERGYDLEFAERIFDQICGFGEYGFPESHSASFAVLAYCSAWLK 735

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-----RI 835
             +YP EF  A +  +        +  QDAR+  ++++P  +N       +         +
Sbjct: 736  FYYPAEFYTALLNSQPMGFYSPSQLIQDARRHGVEVLPVCINHSSYQHHLVQRPNGRLGV 795

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                  +KG    +A  ++E      + ++++    V     NRR +E L  A       
Sbjct: 796  QLGFRLVKGFNQESASRLVERRPSTGYRAIQE----VKQILRNRRDIELLASANTFQILS 851

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R     +  +                  +F H +   ++          +       +
Sbjct: 852  GNRYNARWAAMDSLSD------------LPLFNHIEEPMANYQAQP-----SEYENLIED 894

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G   S HP+ + +   +       ++ V     + + +  +V  +Q   T  G  +
Sbjct: 895  YASTGLSLSRHPITLLEEAGKLPRFTRMKQLVEKEHKSLVTVVGVVTGRQSPGTAAG--V 952

Query: 1016 GWVTFSEPAKEYEANFF 1032
             + T  +         +
Sbjct: 953  TFFTLEDDTGNINVVVW 969


>gi|327459938|gb|EGF06278.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK1057]
          Length = 1069

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 291/1023 (28%), Positives = 483/1023 (47%), Gaps = 98/1023 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 36   IQLDTKTVYSFMDSLVPIKKYVQKAKDLGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 95

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  L +   +                 + LL   ++GY+ L++ VS + ++ Q       
Sbjct: 96   GLDLSLIKAEKEL-------------HLRLLALDSQGYRNLMK-VSTLKMMGQKN----- 136

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                 Q +  +GL ++     G  D                      G   Y+ +     
Sbjct: 137  -WEDFQHLF-KGLALIVPAFDGVADLDL-------------------GMDFYIGVFPATP 175

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                              P +  +   +    D E   +L A+  +  +  ++   +   
Sbjct: 176  R------------QEFGRPTLPLHTVRYFDTGDLETLQMLRAIRENASL--REIGSLPNH 221

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +L     +   F +      + +E   R           LPR       + ++    EL
Sbjct: 222  EFLLTPDALAGAFKETFPESLSNLEKLVRYVHYDINRELKLPR------FNRERPAVEEL 275

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R ++ AGL+ R        G   + Y++RL+ EL VI +M F  YFLIV D +++ +   
Sbjct: 276  RERSEAGLKKR--------GLTGKLYQERLNQELAVIHQMGFDDYFLIVWDLLRFGRSQG 327

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E I
Sbjct: 328  YYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPEFI 387

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +      A
Sbjct: 388  RYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLT---SA 444

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+      
Sbjct: 445  YEKNMGFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPLKYG--E 502

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D ET  
Sbjct: 503  DMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIAEIDLEDAETLK 562

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+G E+
Sbjct: 563  LFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGLEQ 622

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + +E
Sbjct: 623  VELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKSAAEMHRMQE 682

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F   
Sbjct: 683  DFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPDVFFDV 742

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA  F+ +  P S+N      K  D +I+  L  IKG+    A
Sbjct: 743  MLN------YSSSDYITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLPRDLA 796

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L N+  
Sbjct: 797  YWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLPNLFV 856

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            +A  +         ++FA    ++++          + + +FE EQ ++G   S HPL  
Sbjct: 857  FADEL--------GSLFADTTYSWTEA------QDFSDAEKFELEQSIIGVGLSDHPL-- 900

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                L K   + +         +  R+ A V + +  +T+KG  + ++  S+  K+ +  
Sbjct: 901  --VKLAKEADQPFSWISELTENSRARILAEVQTIKTIRTKKGENMAFLQVSDTKKKLDVT 958

Query: 1031 FFP 1033
             FP
Sbjct: 959  LFP 961


>gi|113475557|ref|YP_721618.1| DNA polymerase III subunit alpha / intein [Trichodesmium erythraeum
           IMS101]
 gi|110166605|gb|ABG51145.1| DNA polymerase III, alpha subunit / Intein [Trichodesmium
           erythraeum IMS101]
          Length = 2684

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 252/777 (32%), Positives = 405/777 (52%), Gaps = 58/777 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+      PAIA+TD   ++ A++  +      I+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPQLIDRAVELGMPAIALTDHGVMYGAIQLIKLCRNKNIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-QGKQ- 127
           IIG ++ +   D  K     K         V+L    +GY+ L++L +  +L   QGK  
Sbjct: 62  IIGNEMYVIKGDIEKQQRGKK------FHQVVLAKNTQGYKNLVKLTTLSHLHGFQGKGI 115

Query: 128 --SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I    L++   EGLI+ +G  +G + +       + A+K    +K LFG+  Y+ 
Sbjct: 116 FARPCINKELLEKYH-EGLIVTSGCLAGEVPQNIMRGELEEAKKIAKWYKDLFGEDYYLE 174

Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H    DR   + +V +A   ++ +VATN+S F+S  D EAHD L+ +    +++++ 
Sbjct: 175 IQDHGFQEDRVVNTGIVTIAKKLKIKIVATNDSHFISCRDVEAHDALLCINTQKLIAEEK 234

Query: 245 RPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECD- 301
           R R +   YLK+  EM  +F D    E +E  +      +  ++ +  IL      +   
Sbjct: 235 RMRYSGTEYLKSAEEMKQLFRDHLENEVIEEAIANTLEVANKVKAYEGILGEPRIPDYPI 294

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                 +  L   A +GL  RL      K   +  Y++R++ EL V+    FS YFL+V 
Sbjct: 295 PPDHNADTYLEKLAWSGLLERLK--LKQKSEISPIYKERMETELKVLQDKGFSTYFLVVW 352

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           D+I++A+ NNIPVGPGRGS AGS+ AY+L IT+IDP+   LLFERFLNP+R SMPD D D
Sbjct: 353 DYIKYARDNNIPVGPGRGSAAGSLVAYSLRITNIDPVHHGLLFERFLNPERKSMPDIDTD 412

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC + RD +I+YV  +YG ERVAQIITF  + +KA L+DVGR L + + + +++ KLIP 
Sbjct: 413 FCIENRDVMIKYVTQRYGEERVAQIITFNRMTSKAVLKDVGRVLGISFGEANKMAKLIPV 472

Query: 482 DPAHPVSLQAI----ADDSRFREARLADPSV--------------DRLLEISQKLEGLYR 523
               P  L+ +         F++A     +                + ++++ ++EG  +
Sbjct: 473 ARGKPAKLKVMISDETPSPEFKKAYDNQETPIEDNKAGKISTISVRQWIDMAIRIEGTNK 532

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
               HAAG+VI   PL ++VP+ R+      +TQ++M+ IE  GL+K DFLGLK LT++Q
Sbjct: 533 TFGVHAAGVVISKEPLDEIVPLQRN-NDGSVITQYHMEDIESLGLLKMDFLGLKNLTIIQ 591

Query: 584 KSLDFLAQRGVKV--------------------DLSLIPFDDHETYHLLTTKGTLGIFQL 623
            + + + +                         +   +P D  +TY L+ +    G+FQL
Sbjct: 592 NTAELIKKNHHLPLVPDDLPANERKAIEILAKGNTKKMPEDVKKTYDLIKSGDLEGVFQL 651

Query: 624 ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPM 681
           ESSGM   ++ ++P  IEDI ++++LYRPGP+D   I  + +RK+G EKI   HP ++P+
Sbjct: 652 ESSGMVDVVKKLKPTSIEDISSILALYRPGPLDAGLIPKFIDRKHGSEKIEYQHPKLEPI 711

Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
           LKET GV+   +  +      S  ++         +    ++  + +  +      +
Sbjct: 712 LKETYGVLCLPKGTLIDQPDGSREAIENIKSGEVILTSDGRKVWEAKVAKQWRSGVR 768


>gi|322374440|ref|ZP_08048954.1| DNA polymerase III, alpha subunit [Streptococcus sp. C300]
 gi|321279940|gb|EFX56979.1| DNA polymerase III, alpha subunit [Streptococcus sp. C300]
          Length = 1033

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 290/1022 (28%), Positives = 480/1022 (46%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +AI D +NL+ A  F +     GI+P+I
Sbjct: 3    AQLDTKTVYSFMESVVSIEKYVQMAKEYGYSHLAIMDVDNLYGAYHFLEATRKHGIRPLI 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ +                    S+  L  + +GYQ L++L +        K + R 
Sbjct: 63   GLEMTL-------------VKDEENISLRFLALSTKGYQELMKLSTL-------KMTGRK 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S       E + ++    +G +++                     G   ++ +     
Sbjct: 103  KWSDFTS-HLEDVAIVVPYFNG-VEQLDL------------------GHDYFIGVSPDTP 142

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             + +              P++         +ED +   +L AV  +  + + D       
Sbjct: 143  QEVFTR------------PILPLYQVNSFEKEDLQVLQILSAVKDNVSLREVDVHSQ-QG 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +L          +  P+AL            +++  +  +   ++    + ++    EL
Sbjct: 190  IFLPASDLEAQFKNRFPQAL-------ANLQGLIENVSYQIDPSLKLPRFNPERPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G           KG  +  Y +RL+ EL VI  M F  YFL+V D +++ +   
Sbjct: 243  RERAEQG--------LSDKGLTSAIYHERLNEELAVIHDMGFDDYFLVVWDLLRFGRSQG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AY+L IT IDP+  +L+FERFLN +R +MPD DID     R E I
Sbjct: 295  YYMGMGRGSAVGSLVAYSLDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDLYRPEFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG + VAQI+T+ +  AK A+RDV +   +P  ++  + K I           A
Sbjct: 355  RYVRDRYGSQHVAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITKKISF---RDTLTTA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI++K+EG  R  S HAAG+V+ D+ L+  +P+      
Sbjct: 412  YEKNLQFRQVINSKIEYQKAFEIARKIEGYPRQTSIHAAGVVMSDQDLTDYIPLKYG--E 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + LA+ G     +  I  +D ET  
Sbjct: 470  DMLITQYDAHGVEANGLLKMDFLGLRNLTFVQKMQELLAESGGIHLRIEDIDLEDKETLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E  G  + L+ +QP   E+++A  SL RPG  D I  +  RK+GKEK
Sbjct: 530  LFAAGNTKGIFQFEQPGAIRLLKRVQPQVFEEVVATTSLNRPGASDYIDNFVARKHGKEK 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK  +EM   KE
Sbjct: 590  VTVLDPALEDILSSTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAKEMHLMKE 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI+GA K G ++  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  DFITGAMKLGHTEEKANQVFAVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFFQV 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA Q   ++ P ++N+     K+   +IY  L AIKG+    +
Sbjct: 710  MLN------YSSSDYIVDALQMGFEVAPLAINSIPYHDKISQKKIYLGLKAIKGMPRDLS 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++PF S+EDF +R+        +L SLV  G  D F  +R ++L +L N+  
Sbjct: 764  YWIIE---NRPFSSIEDFITRLPKNYKKLSLLTSLVELGLFDEFDKNRQKILVNLPNLFV 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +          +FA    ++++            + +F  EQ ++G   S HPL  
Sbjct: 821  FVEEL--------GGLFADTNYSWTEA------DDFTEAEKFYKEQELIGVGISPHPLQ- 865

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                L K  +    +      G+   L   V   +  +T+KG  + ++   +   + +  
Sbjct: 866  ---TLAKQALYPTTQITNLTEGSQTTLLVEVQKIKVIRTKKGESMAFLQVHDSKSKLDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  VF 924


>gi|327473794|gb|EGF19212.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK408]
          Length = 1069

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 291/1023 (28%), Positives = 484/1023 (47%), Gaps = 98/1023 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 36   IQLDTKTVYSFMDSLVPIKKYVQKAKDLGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 95

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +L +  ++                 + LL   ++GY+ L++ VS + ++ Q       
Sbjct: 96   GLELSLIKEEQEL-------------HLRLLALDSQGYRNLMK-VSTLKMMGQKN----- 136

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                 Q +  +GL ++     G  D                      G   YV +     
Sbjct: 137  -WEDFQHLF-KGLAVIVPAFDGVADLDL-------------------GLDFYVGVFPATP 175

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                              P +  +   +    D E   +L A+  +  +  ++   ++  
Sbjct: 176  K------------QEFGRPTLPLHTVRYFDTGDLETLQMLRAIRENASL--REIGSLSNH 221

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +L     +   F +        +E   R           LPR       + ++    EL
Sbjct: 222  EFLLAPDALAGAFKETFPESLANLEKLVRHVHYDINRELKLPR------FNRERPAVEEL 275

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R ++ AGL+         +G   + Y++RLD EL VI +M F  YFLIV D +++ +   
Sbjct: 276  RERSEAGLKK--------RGLTGKLYQERLDQELAVIHQMGFDDYFLIVWDLLRFGRSQG 327

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E I
Sbjct: 328  YYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPEFI 387

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +      A
Sbjct: 388  RYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLT---SA 444

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  FR+   +     R  +I++K+EG  R  S HAAG+V+ D  L+  +P+      
Sbjct: 445  YEKNMGFRQIINSKLEYQRAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPLKYG--E 502

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D +T  
Sbjct: 503  DMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIADIDLEDLDTLK 562

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+G E+
Sbjct: 563  LFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGLEQ 622

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + +E
Sbjct: 623  VELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKSAAEMHRMQE 682

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F   
Sbjct: 683  DFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPDVFFDV 742

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA  F+ +    S+N      K  D +I+  L  IKG+    A
Sbjct: 743  MLN------YSSSDYITDALSFDFETAHLSINNIPYHDKFQDKKIFLGLKNIKGLPRDLA 796

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L N+  
Sbjct: 797  YWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLPNLFV 856

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            +A  +         ++FA    ++++          + + +FE EQ ++G   S HPL  
Sbjct: 857  FADEL--------GSLFADTTYSWTEA------QDFSDAEKFELEQSIIGVGLSNHPL-- 900

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                L K   + +         +  R+ A V + +  +T+KG  + ++  S+  K+ +  
Sbjct: 901  --VKLAKEADQPFSWISELTENSRARILAEVQTIKTIRTKKGENMAFLQVSDTKKKLDVT 958

Query: 1031 FFP 1033
             FP
Sbjct: 959  LFP 961


>gi|322411903|gb|EFY02811.1| DNA polymerase III DnaE [Streptococcus dysgalactiae subsp.
            dysgalactiae ATCC 27957]
          Length = 1036

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 293/1025 (28%), Positives = 491/1025 (47%), Gaps = 100/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L++  ++        I I D +NL+ A  F +     G++P+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLSHYFEQAKQLGYQTIGIMDRDNLYGAYHFIRGCQKHGLRPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++++  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEVVYQEQQVL-------------LNLIAKNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L +   EGL ++       I    + ++              F    Y+++    
Sbjct: 102  LHMDYLCQ-HLEGLAVI-------IPNRVWTDTLS------------FPFDYYISV---- 137

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                         +    +PL     + + +++D E   +L A+  + +   +     + 
Sbjct: 138  ---DQYTDFSSMDSKRQFIPL---RTARYFAQDDMETLHMLHAIRDN-LSLVETPVVESD 190

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                  +       +  P+AL+N  ++     +       +          +  K  + E
Sbjct: 191  QELGDCQQLTAFYQAHCPQALQNLEDLVSGIHYDFDTDLKLPR-------FNRDKSAKQE 243

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L+    AG         +AKG   + Y+ RL  EL VI+ M F  YFLIV D +++ +  
Sbjct: 244  LQELTQAG--------LVAKGLWHEPYQTRLAHELTVISDMGFDDYFLIVWDLLRFGRSK 295

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ AYAL IT IDP+R  LLFERFLN +R SMPD DID     R E 
Sbjct: 296  GYYMGMGRGSAAGSLVAYALNITGIDPVRHDLLFERFLNKERYSMPDIDIDLPDIYRSEF 355

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I           
Sbjct: 356  LRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGF---KDSLAT 412

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+   +     +   I+Q++EG  R  S HAAGIV+ D  L+  +P+     
Sbjct: 413  VYEKNISFRQTINSRVEFQKAFAIAQRIEGNPRQTSIHAAGIVMSDDNLTNHIPL--KAG 470

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             ++ VTQ++   +E  GL+K DFLGL+ LT +QK  + +A+    ++D++ I  +D +T 
Sbjct: 471  DEMMVTQYDANAVEANGLLKMDFLGLRNLTFVQKMQEKVAKEYGQQIDIAAIDLEDSQTL 530

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D  V +  R+ G+E
Sbjct: 531  ALFAKGDTRGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTVNFIKRRQGQE 590

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  I P+I P+L+ T G+++YQEQVMQIAQ  +G++L +AD+LRRAM KK   EM K +
Sbjct: 591  KIDLIDPVIAPILESTYGIMLYQEQVMQIAQTYAGFTLGKADLLRRAMSKKNLLEMQKME 650

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E F++GA + G S+  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F  
Sbjct: 651  EAFVAGAKQLGRSEETAKLLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFYD 710

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              M            +  DA + N Q+   ++N+     K+  N IY  L  IKG+    
Sbjct: 711  IMMN------YSSSDYITDALESNFQVAQVTINSIPYTDKIEANSIYMGLKNIKGLPRDF 764

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E  +   F S+EDF +RV  K      LE L+  G  DCF  +R ++L++L+ + 
Sbjct: 765  AYWIIEQRS---FSSVEDFLTRVPEKYQKIAFLEPLIKIGLFDCFDPNRKKILENLEGLI 821

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             +   +         ++FA     + D          +++ ++  EQ ++G   S HPL 
Sbjct: 822  VFVNEL--------GSLFADSSFNWVDT------EDYSTTEKYSFEQELIGVGMSKHPLI 867

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYE 1028
                           + V   +     +   V S +  +T+  G ++ +++ ++  K+ +
Sbjct: 868  DIAEK-STQAFTPISQLV---KDKEATILVQVDSIRTIRTKISGQQMAFLSVNDTKKKLD 923

Query: 1029 ANFFP 1033
             N FP
Sbjct: 924  VNLFP 928


>gi|83645018|ref|YP_433453.1| DNA polymerase III subunit alpha [Hahella chejuensis KCTC 2396]
 gi|123767471|sp|Q2SJZ6|DNAE2_HAHCH RecName: Full=Error-prone DNA polymerase
 gi|83633061|gb|ABC29028.1| DNA polymerase III, alpha subunit [Hahella chejuensis KCTC 2396]
          Length = 1032

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 260/1046 (24%), Positives = 440/1046 (42%), Gaps = 95/1046 (9%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------ 63
            SFV L   S+YS L+GA     ++ +  A     +AITD  ++  A++  ++        
Sbjct: 2    SFVELHCISNYSFLKGASHPEELVRQAIAQGYEGLAITDECSVAGAVKAWRELRRLRQEA 61

Query: 64   --AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
              A+  + IIG +                         V+L    + Y  L   ++    
Sbjct: 62   PEASAFKLIIGSEF-----------------HYEGNCFVVLAPHKKAYGELCRFITDCRR 104

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                K   +     L E   +GL                +   Q  ++ +    K+F  R
Sbjct: 105  KAD-KGDYQFSPDALNENIKQGL--------------LLWRPKQSDQEFIPALTKIFSGR 149

Query: 182  LYVNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            L++ L+     +   E +++Q L+  + LP+V++N     + E    HD L A+  +  V
Sbjct: 150  LWLLLELSLSEEDDSERELIQTLSSAYNLPVVSSNGVKMHAPERKRLHDALTAIRFNQSV 209

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                + R+ P+     R             ++ ++ IA +C+F L       P+ +  E 
Sbjct: 210  DS-IKDRLAPNAENYLRPLNEIHEIYPSFTIQESLRIAAKCAFELNEIRYQYPKEVVPEG 268

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            DD        LR     G  +R  QG        ++    L+ ELN+I+ +++  YFL +
Sbjct: 269  DD----PSAYLRRLTYEGAHLRYPQG------IPENVLATLEKELNIISELQYEYYFLTI 318

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D + +AKK+ I    GRGS A SV  Y L IT +DP R SLLFERF++  R   PD D+
Sbjct: 319  FDIVDYAKKSQIL-CQGRGSAANSVVCYCLGITAVDPTRASLLFERFISKGRDEPPDIDV 377

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP-YSQVDRLCKLI 479
            DF   RR+EVI+Y+  +YG ER A   T  + + K+A+RD+G+AL +        +    
Sbjct: 378  DFENARREEVIQYLYRRYGRERCAIAATVITYRPKSAIRDLGKALGVDLLQLESVIANYG 437

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                      + I    +  +          LL          RH S H  G V+   PL
Sbjct: 438  WRYRGQDWIDEVI--TPQVSQDNHILTCFKELLPELLGF---PRHLSQHVGGFVLSAGPL 492

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
             +LVP+      D  V Q++   +E  GL+K D L L  LT L+K   ++++   K    
Sbjct: 493  VELVPIENAAMEDRTVIQWDKDDLESLGLMKVDVLALGMLTALKKCTTYISEITGKTFSL 552

Query: 600  LIPFDDH--ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                 +   + Y +L    T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  
Sbjct: 553  ESIPKEEDSQVYDMLQRADTVGLFQVESRAQMNMLPRLRPEKYYDLVVQVAIVRPGPIHG 612

Query: 658  IVVYN---NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
             +V+     R N ++      P + P+LK T GV I+QEQV+ IA + +G++  EA+ LR
Sbjct: 613  DMVHPYLRRRHNLEDPDDVPLPELKPILKRTFGVPIFQEQVIAIAIVGAGFTSEEAEELR 672

Query: 715  RAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+M    +   M K  ++ I    K G+       +   +  F +YGF +SHAA++A+++
Sbjct: 673  RSMASWKRRGHMGKLMDKLIINLLKKGVPLEYIQRLCRQIEGFGEYGFPESHAASFALLA 732

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-- 831
            Y + W+K +YP  F  A +  +        +  QDA++  + ++P  +N    + ++   
Sbjct: 733  YHSGWLKYYYPSAFCCALLNSQPMGFYAPWQVIQDAQRHGVIVLPVDINNSYWEHRLEPH 792

Query: 832  -----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                 +  +      +KG+    A  I++   D+ F SL      +   K+NR  LE+L 
Sbjct: 793  SDNTKEGALRLGFRLVKGLSEEAACSIIQHRTDEGFTSL---VQVMHLPKINREDLEALA 849

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             A AL   G +R Q          Y Q            +F+  +    D      F   
Sbjct: 850  SANALASLGENRYQQRWECSGFLYYYQ------------LFSECEYINID------FEPP 891

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            +       +    G   + HPL   +            E +    G    +A +V+++Q+
Sbjct: 892  SRLDNIYEDHSSTGVVLNDHPLAYLREANLTPQCLTAVELLKQKAGLKTYVAGVVINRQR 951

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
             KT  G  + +VT  +         +
Sbjct: 952  PKTSTG--VTFVTLEDETGSINILVW 975


>gi|306825369|ref|ZP_07458709.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus sp. oral
            taxon 071 str. 73H25AP]
 gi|304432307|gb|EFM35283.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus sp. oral
            taxon 071 str. 73H25AP]
          Length = 1033

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 286/1022 (27%), Positives = 473/1022 (46%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +AI D +NL+ A  F +     GIQP+I
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVQTAKEYGYSHLAIMDVDNLYGAYHFLEVTRKYGIQPLI 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ +                    S+  L  + +GYQ L++L +        K + R 
Sbjct: 63   GLEMTL-------------IKDEENISLRFLALSTKGYQELMKLSTL-------KMTGRK 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S       E + ++    +G +++                     G   ++ +     
Sbjct: 103  NWSDFTS-HLEDVAIIVPYFNG-VEQLDL------------------GHDYFIGVSPDTP 142

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
              +   ++++       LPL   N   F  E+      +     + ++       +    
Sbjct: 143  --QEVFTRLI-------LPLYQVN--SFEKEDIQVLQILSAVKDNVSLREVDVHSQ--QG 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +L          +   +AL            +++  +  +   ++    + ++    EL
Sbjct: 190  IFLPASDLEARFKNRFSQAL-------ANLQGLIENVSYQIDPSLKLPRFNPERPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G           KG  +  Y +RL+ EL VI  M F  YFL+V D +++ +   
Sbjct: 243  RERAEQG--------LSDKGLTSAIYHERLNEELAVIHDMGFDDYFLVVWDLLRFGRSQG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AY+L IT IDP+  +L+FERFLN +R +MPD DID     R E I
Sbjct: 295  YYMGMGRGSAVGSLVAYSLDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDLYRPEFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG + VAQI+T+ +  AK A+RDV +   +P  ++  + K I           A
Sbjct: 355  RYVRDRYGSQHVAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITKKISF---RDTLTTA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI++K+EG  R  S HAAG+V+ D+ L+  +P+      
Sbjct: 412  YEKNLQFRQVINSKIEYQKAFEIARKIEGYPRQTSIHAAGVVMSDQDLTDYIPLKYG--E 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + LA+       +  I  +D  T  
Sbjct: 470  DMLITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQELLAESEGVHLKIEEIDLEDKATLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E  G  + L+ +QP   E+++A  SL RPG  D I  +  RK+GKEK
Sbjct: 530  LFAAGNTKGIFQFEQPGAIRLLKRVQPQVFEEVVATTSLNRPGASDYIDNFVARKHGKEK 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK  +EM   KE
Sbjct: 590  VTVLDPALEDILSSTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAKEMHLMKE 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI+GA K G ++  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  DFITGAMKLGHTEEKANQVFAVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFFQV 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA Q   ++ P ++N+     K+   +IY  L AIKG+    +
Sbjct: 710  MLN------YSSSDYIVDALQMGFEVAPLAINSIPYHDKIAQKKIYLGLKAIKGMPRDFS 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++PF S+EDF +R+        +L  LV  G  D F  +R ++L +L N+  
Sbjct: 764  YWIIE---NRPFSSVEDFVTRLPKNYKKLSLLTPLVELGLFDEFDKNRQKILVNLPNLFV 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +          +FA    ++++            + +F  EQ ++G   S HPL  
Sbjct: 821  FVEEL--------GGLFADTTYSWTEA------DDFTEAEKFYKEQELIGVGISAHPLQ- 865

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                L K  +           G    L   V   +  +T+KG  + ++   +     +  
Sbjct: 866  ---TLAKQALYPTTPIANLTEGAQATLLVEVQKLKVIRTKKGESMAFLQVHDSKSRMDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  VF 924


>gi|225389825|ref|ZP_03759549.1| hypothetical protein CLOSTASPAR_03573 [Clostridium asparagiforme
           DSM 15981]
 gi|225044110|gb|EEG54356.1| hypothetical protein CLOSTASPAR_03573 [Clostridium asparagiforme
           DSM 15981]
          Length = 592

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 213/588 (36%), Positives = 331/588 (56%), Gaps = 20/588 (3%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +F HL VH+ YSLL+G+  +  ++ +       ++A+TD   ++  ++F + A   GI+P
Sbjct: 2   AFTHLHVHTEYSLLDGSCKIRELVARAKELGMDSMAVTDHGVMYGVIDFYKAAREVGIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I+GC++ +         N           +VLL    +GYQ L+++VS+ + +D      
Sbjct: 62  ILGCEVYVAPGSRFDRENVNGE--DRYYHLVLLAENDQGYQNLMKIVSKGF-VDGFYYKP 118

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
           R+    L+    EG+I L+   +G + R       + A +  L ++  FG    ++ LQ 
Sbjct: 119 RVDYELLETYH-EGIIALSACLAGEVQRYLSRGMYEEAGRAALRYQDTFGKGNFFLELQD 177

Query: 189 HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H     +     +++L+    + LVATN+  +   ED +AHD+L+ +     V+ ++R R
Sbjct: 178 HGLDAQKQVNQGLLRLSRDLGIDLVATNDVHYTYAEDEKAHDILLCIQTGKKVADENRMR 237

Query: 248 VTPDHYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                Y      EM ++F    EA+ENT +IA+RC+  ++     LPRF   E  D    
Sbjct: 238 YEGGQYYCKSEEEMRALFPYALEAIENTHKIAQRCNVEIEFGVLKLPRFEVPEGFD---- 293

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               L +  + G      +            R+RLD+EL+VI  M +  YFLIV DFI +
Sbjct: 294 SWTYLNHLCMQGFNRHYPEDDGTL-------RERLDYELDVIRTMGYVDYFLIVWDFINY 346

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A+   I VGPGRGS AGS+ +Y+L IT+IDP+R++LLFERFLNP+R+SMPD D+DFC +R
Sbjct: 347 ARSKGISVGPGRGSAAGSIVSYSLGITNIDPIRYNLLFERFLNPERVSMPDIDVDFCYER 406

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R EVI YV  KYG ++V QI+TFG+L AK  +RDVGR L +PY+  D + K+IPND    
Sbjct: 407 RQEVIDYVVEKYGKDQVVQIVTFGTLAAKGVVRDVGRVLDLPYALCDSIAKMIPNDLGMT 466

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
           +  +A+  +   ++A   D +V  L+++S++LEGL RH S HAAG+VIG R + + VP+ 
Sbjct: 467 LD-KALVMNPDLKKAYNEDETVHNLIDMSKRLEGLPRHTSMHAAGVVIGSRSIDEFVPLS 525

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
           R        TQF M  IE+ GL+K DFLGL+TLT++Q +++   +   
Sbjct: 526 RAA-DGTITTQFTMTTIEELGLLKMDFLGLRTLTVIQNAVNMAQKNHH 572


>gi|149203459|ref|ZP_01880429.1| DNA polymerase III, alpha subunit [Roseovarius sp. TM1035]
 gi|149143292|gb|EDM31331.1| DNA polymerase III, alpha subunit [Roseovarius sp. TM1035]
          Length = 965

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 245/1010 (24%), Positives = 398/1010 (39%), Gaps = 79/1010 (7%)

Query: 1   LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           ++  +     F  L   S+++ L GA      +   AA     +AI D N++   +    
Sbjct: 5   ISAAMP----FAELSATSNFTFLTGASHPEEYIRHAAALGLSGVAIADVNSVAGIVRAHA 60

Query: 61  KACA--------------AGIQPIIGCQLDI-----DMQDNLKMTNQGKTPFPTVPSIVL 101
            A                 G  PI G          D  +  ++    +        I  
Sbjct: 61  AAREIAREVAARQALEARQG--PI-GPPAPQPAAPPDWANCPRLIPAARLVLREGIEITA 117

Query: 102 LVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
           L     G+  L  L+S        K +  + L+ +      GL +L   + G   +A   
Sbjct: 118 LPVNRGGWASLCRLISLGRQR-AIKGACDLGLADVLAGAA-GLHLLVHPAPGRAWQA--- 172

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFL 220
                  +    +    G  + + L  R+ G D  R  ++  LA    LP VA    +  
Sbjct: 173 ----QVLQLAARW----GGSVALLLSPRYDGRDPARFERLTGLAARLGLPTVAAAAPILH 224

Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
                   DVL A+     V +  R      +  L++  EM  +F+    A+     +A 
Sbjct: 225 RGYRRRLADVLSAIRLGVTVDRLGRHALRNAEQRLRSEEEMRRLFAGHEGAVSRAAALAA 284

Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
           R  F L        R+         +     LR  A AGLE R   GA A        R 
Sbjct: 285 RLDFSLDE-----LRYEYPSEVAENETPAQRLRRLAEAGLEWRYPGGAPA------RVRG 333

Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            ++ EL +IA++++  YFL V D + +A+   I    GRGS A SV  Y L +T + P  
Sbjct: 334 MMEHELALIAKLRYEPYFLTVHDVVAFARSRGIL-CQGRGSAANSVVCYCLGVTSVSPEI 392

Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            +++FERF++  R   PD D+DF  +RR+EVI+++  +YG  R     T    + K A+R
Sbjct: 393 GTMVFERFVSEARDEPPDIDVDFEHERREEVIQWIYERYGRHRAGLCATVIHYRTKRAIR 452

Query: 460 DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
           +VGRA+ +    +  +   I           A   +               L+   +++ 
Sbjct: 453 EVGRAMGLSEDLLGAMTSQIWGHGGEGALEPARLAEIGLDPRDPRLARTLALI---REII 509

Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
           G  RH S H  G VI +  L +LVP+         V  ++   I+  G++K D L L  L
Sbjct: 510 GFPRHLSQHVGGFVITEGRLDELVPIENASMEGRTVICWDKDDIDALGILKVDVLALGML 569

Query: 580 TLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
           T ++K+ D     RG    L+ +P +D + Y +L+   +LG+FQ+ES      L  M+P 
Sbjct: 570 TCIRKAFDLLGQHRGQVYSLATLPPEDAQVYEMLSRADSLGVFQVESRAQMNFLPRMRPR 629

Query: 639 CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVM 696
              D++  V++ RPGPI   +V+   +    +  +      +  +L +T GV ++QEQ M
Sbjct: 630 TFYDLVIQVAIIRPGPIQGDMVHPFIRRRNGEEAVSFPSDDLGRVLGKTLGVPLFQEQAM 689

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAK 755
           QIA + +G++  EAD LRR++    K   + + + RF+ G   NG     A   F  +  
Sbjct: 690 QIAIIGAGFTPEEADRLRRSLATFKKHGNVSEFRARFLRGMQANGYDSDFAERCFSQIEG 749

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
           F  YGF +SHAA++A + Y +AW+K H+P  F  A +  +        +  +DAR+  + 
Sbjct: 750 FGSYGFPESHAASFAHLVYASAWLKCHHPAIFACALLNSQPMGFYAPAQIVRDAREHGVT 809

Query: 816 IMPPSVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
           + P  +N    D  +  +      +      IKGV    A  I  A  +  +   ED   
Sbjct: 810 LRPVCINASYWDNTIEPDSRGRLALRLGFRQIKGVAQDEADWIAAARGNG-YVGPEDVWR 868

Query: 871 RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE 930
           R     +    L  L  A      G SR   L     I             +   +FA +
Sbjct: 869 RA---GVAPAALTRLAEADVFAALGLSRRDALWQARAI----------GAERPLPLFARD 915

Query: 931 KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                                   +   L      HPL + + IL   G+
Sbjct: 916 IDGEGIVEPAAHLPAMTLGEEVVEDYTALRLSLRAHPLALLRHILTPPGL 965


>gi|328945925|gb|EGG40073.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK1087]
          Length = 1069

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 292/1023 (28%), Positives = 482/1023 (47%), Gaps = 98/1023 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 36   IQLDTKTVYSFMDSLVPIKKYVQKAKDLGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 95

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  L +   D                 + LL   ++GY+ L++ VS + ++ Q       
Sbjct: 96   GLDLSLIKADQEL-------------HLRLLALDSQGYRNLMK-VSTLKMMGQKN----- 136

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                 Q +  +GL ++     G  D                      G   Y+ +     
Sbjct: 137  -WEDFQHLF-KGLALIVPAFDGVADLDL-------------------GMDFYIGVFPATP 175

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                              P +  +   +    D E   +L A+  +  +  ++   +   
Sbjct: 176  K------------QEFGRPTLPLHTVRYFDTGDLETLQMLRAIRENASL--REIGSLPNH 221

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +L     +   F +        +E   R           LPR       + ++    EL
Sbjct: 222  EFLLTPDALAGAFKETFPESLANLEKLVRYVHYDINRELKLPR------FNRERPAVEEL 275

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R ++ AGL+ R        G   + Y++RL+ EL VI +M F  YFLIV D +++ +   
Sbjct: 276  RERSEAGLKKR--------GLTGKLYQERLNQELAVIHQMGFDDYFLIVWDLLRFGRSQG 327

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E I
Sbjct: 328  YYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPEFI 387

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +      A
Sbjct: 388  RYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLT---SA 444

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+      
Sbjct: 445  YEKNMGFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPLKYG--E 502

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D ET  
Sbjct: 503  DMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIADIDLEDAETLK 562

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+G E+
Sbjct: 563  LFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGLEQ 622

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + +E
Sbjct: 623  VELIDESLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAAEMHRMQE 682

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F   
Sbjct: 683  DFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAFFKAHYPDVFFDV 742

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA  F+ +  P S+N      K  D +I+  L  IKG+    A
Sbjct: 743  MLN------YSSSDYITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLPKDLA 796

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L N+  
Sbjct: 797  YWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILVNLPNLFV 856

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            +A  +         ++FA    ++++          + + +FE EQ ++G   S HPL  
Sbjct: 857  FADEL--------GSLFADTTYSWTEA------QDFSDAEKFELEQSIIGVGLSDHPL-- 900

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                L K   + +         +  R+ A V + +  +T+KG  + ++  S+  K+ +  
Sbjct: 901  --VKLAKEADQPFSWISELTENSRARILAEVQTIKTIRTKKGENMAFLQVSDTKKKLDVT 958

Query: 1031 FFP 1033
             FP
Sbjct: 959  LFP 961


>gi|225631083|ref|ZP_03787815.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of
            Muscidifurax uniraptor]
 gi|225591221|gb|EEH12371.1| DNA polymerase III, alpha subunit [Wolbachia endosymbiont of
            Muscidifurax uniraptor]
          Length = 797

 Score =  466 bits (1198), Expect = e-128,   Method: Composition-based stats.
 Identities = 402/814 (49%), Positives = 558/814 (68%), Gaps = 21/814 (2%)

Query: 197  ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKN 256
            E  ++  AY   +PLVATN+  F +  DYEA+D+L  ++  +   + +R ++T +HY K+
Sbjct: 2    EEALIDFAYQRNIPLVATNDVFFPNRSDYEAYDILTCISEGSYALENNRKKLTTEHYFKS 61

Query: 257  RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
             +EM  +FSD+PEA+ NT+ IA+RCS++ +   PILP+F  +E     K E  ELR +AV
Sbjct: 62   VAEMEELFSDIPEAIHNTLVIAKRCSYMPRSRQPILPKFPCRE----NKTENEELREQAV 117

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
            AGLE R+A          + Y  RL++EL+VI  M ++GYFLIV+DFI+W+K N IPVGP
Sbjct: 118  AGLEFRIAN---ETDIDLKQYYDRLNYELSVITSMNYAGYFLIVSDFIRWSKANGIPVGP 174

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGSGAGS+ A+ L ITD+DP++F L+FERFLNPDR+SMPDFDIDFCQ++RD VI YVQ 
Sbjct: 175  GRGSGAGSIVAWGLQITDLDPIKFGLIFERFLNPDRVSMPDFDIDFCQEKRDLVIDYVQK 234

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQAIADD 495
            KYG   VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +PV+  QAI  D
Sbjct: 235  KYG--YVAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNPVTLSQAIEFD 292

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
               ++ R +D  + +LL+IS KLEG+YRH STHAAGIVI D+ L   VP+Y D  S LP+
Sbjct: 293  QNLQKERDSDEVIAKLLDISLKLEGIYRHVSTHAAGIVICDQKLENFVPVYYDPNSALPI 352

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            TQ++MK++EKAGLIKFDFLGL TLTL+      + + G K+D+S +P +D +TY +L++ 
Sbjct: 353  TQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDGKKIDISSVPLNDQKTYEILSSG 412

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
             ++G+FQLESSGMR+AL  ++PDCIEDIIAL+SLYRPGP+DNI  Y  RK+G EK   IH
Sbjct: 413  DSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARKHGLEKPDYIH 472

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            PL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIKEEMDKQ+E FI G
Sbjct: 473  PLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKEEMDKQRELFIQG 532

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A+KNG+    A  IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+EF  A M L 
Sbjct: 533  ATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPLEFFTALMNLN 592

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
            +D+ +K+  F   A+   + ++ P +N    +F + D RI Y +AA++ VG + A  I+ 
Sbjct: 593  IDDRDKLNLFYHAAKFSGVTVLSPDINKSQAEFSIEDERIRYGIAALRNVGFSIAEGIVN 652

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
              +      + +F        +N+R LESL+ +GA D    +R QL +S+D +  +A   
Sbjct: 653  VHSSAC-KDIWEFTQN-SGHTINKRALESLIKSGAFDSVHKNRKQLYESMDTLIYFANKN 710

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            +++R +    +F         K  LE     +   + E+E   LGFY + HPL+ ++ +L
Sbjct: 711  KQDRESSQAALFGSLDVL---KPKLENVEDFDEEEKLEHELFSLGFYLTNHPLEKFRTLL 767

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
             K+ I    E          + A ++++ + + +
Sbjct: 768  EKLNIGFIGE------NRTAKTAGVILNARMRTS 795


>gi|148272699|ref|YP_001222260.1| DNA polymerase IIIsubunit alpha [Clavibacter michiganensis subsp.
            michiganensis NCPPB 382]
 gi|147830629|emb|CAN01565.1| DNA polymerase III, alpha chain [Clavibacter michiganensis subsp.
            michiganensis NCPPB 382]
          Length = 1140

 Score =  466 bits (1198), Expect = e-128,   Method: Composition-based stats.
 Identities = 293/1106 (26%), Positives = 473/1106 (42%), Gaps = 119/1106 (10%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            SF HL V S++S   G  +   ++D++A++  PA AITD + L+ A+   +++ AAG+ P
Sbjct: 2    SFTHLHVASAFSAHFGTSAPEALVDRVASEGAPAAAITDRDGLYGAVRHIRRSLAAGVSP 61

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE---GYQRLIELVSRMYLLD--- 123
            ++G +L +  +                  I +L        G+  L  L+S  +      
Sbjct: 62   VVGAELGLTGEH--------------PGRITVLAHGGTRGQGWAALSRLISASHGRGTAR 107

Query: 124  -------QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
                    G    R     L E G  G +ML  G    + RA       +A + L  + +
Sbjct: 108  STARSAQAGIARTRPPAFLLGEDGPVGTVML--GPDSDVGRAVAAGDHALASRHLAEWAR 165

Query: 177  LFGDRLYVNLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
            L    + V +  H             +++++LA  H +P V TN   +L  +D    DVL
Sbjct: 166  LLPGAVVVEVVCHFTEPGESASLRHAARMLELADAHRVPAVLTNAVRYLEPDDALTGDVL 225

Query: 232  MAVAHS------TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
             A                     TP        E+    S    A E  +      +   
Sbjct: 226  DAAGTLRPLGSFRPQPNGQAWLKTPTEMQGIAREIAGASSLDRRAGEALLRATEELADRC 285

Query: 286  QVH-----APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
            ++      A   P+  EK    +  + +  L  KA AG+  R      A     Q    R
Sbjct: 286  RLDPDADLAWRKPKLPEKSVIGVTGDPDEALWRKAEAGVTERFGHVDEAM---RQRVLAR 342

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            +  EL  I    F+ YFL VAD     +   +     RGSGAGS+  Y L I+++DPL  
Sbjct: 343  MRTELTTITGFGFATYFLTVADVCALMRDMGVR-NQARGSGAGSLVNYLLRISNVDPLEH 401

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             LLFERFL   R ++PD DID    RR EV   V  KYG  RV  +    + +A+ A RD
Sbjct: 402  DLLFERFLGKVRSTLPDIDIDVESARRHEVYHRVFEKYGSNRVTLLSMQNTYRARGAARD 461

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE---ARLADPSVDRLLEISQK 517
             G AL +   Q+D + K I    A       +      +        DPS+D L++++++
Sbjct: 462  AGLALDLDEQQIDFIAKNIWRFNAREF-RAVLETKPELKPIADLVRDDPSIDLLVDLTER 520

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            L+ L RH S H  G+++GD  L    P+       LP++QF+   I+  GL+K D LG++
Sbjct: 521  LDRLPRHISMHPCGVILGDSDLLSTSPVQ-PSGMGLPMSQFDKDDIDDMGLLKLDILGVR 579

Query: 578  TLTLLQKSLDFLA--------------------QRGVKVDLSLIPFDDHETYHLLTTKGT 617
              + +  +LD +                      R  +++L  IP DD ET+  + T  T
Sbjct: 580  MQSTMAYALDEIHRIHGARSAVAGGIPVDARYVHRDGRIELDEIPHDDEETFAAIRTTHT 639

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIH 675
            LG+FQ+ES G R+ +  MQPD  ED+IA VSL+RPGP+   +   + + K+G      +H
Sbjct: 640  LGMFQIESPGQRELIGKMQPDVYEDLIADVSLFRPGPMKGNMVAPFLDTKHGITLPDYLH 699

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            P   P L  T GV+IY EQV++I       SL+EAD LRR M +         +ER    
Sbjct: 700  PRFAPFLAPTFGVVIYHEQVIRIFADCMQVSLAEADELRRNMERMDTVVEQAFRERTAMH 759

Query: 736  ----ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
                  +   S      I++ L  F  +GF K+H AA+A+ ++Q+AW+KTHYP EFLA  
Sbjct: 760  VDGRTGRRPFSDADVERIWKALKGFGSFGFCKAHGAAFALPTWQSAWLKTHYPAEFLAGI 819

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--------------DNRIYY 837
            +T +     K +    +AR+  + ++P  VN     ++V               +  I  
Sbjct: 820  LTHDPGMYPK-RLLLTEARRMGVPVLPLDVNRSRGVYRVERVDGGETTGRTRIGELGIRL 878

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            SL  + G+       I      +P+DS+ DF ++      +R +LE L   GALD    +
Sbjct: 879  SLQDVHGMSEAELERI---ERGQPYDSISDFYAKAQP---SRALLERLAAVGALDPLATN 932

Query: 898  -----------RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
                       R  ++  +  +   A+            +F  ++               
Sbjct: 933  EDDRAARGAASRGDVMAYVRRL--TARAARPADPAGQLPLFVDDRDLIP-----RGSPDP 985

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
            +   R   E  +L    + H L+ Y+P+L ++G+    + +    G+ + +A + ++ Q 
Sbjct: 986  DGRARVAAELDILQMEVTEHVLESYRPMLDELGVIPASQLLEVRSGSEVVVAGIRIATQT 1045

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
               R G R+ +++  +     ++ FF
Sbjct: 1046 PPMRSGKRVVFISLDDGTGCSDSTFF 1071


>gi|91782661|ref|YP_557867.1| DNA polymerase III, alpha subunit [Burkholderia xenovorans LB400]
 gi|91686615|gb|ABE29815.1| DNA polymerase III, alpha subunit [Burkholderia xenovorans LB400]
          Length = 1195

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 249/1143 (21%), Positives = 436/1143 (38%), Gaps = 159/1143 (13%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK---- 61
               P++  L   +++S L GA     ++++  +    A+AITD  +L   +         
Sbjct: 16   THLPAYAELHCLTNFSFLRGASHPYELVEQAMSRGYSALAITDECSLAGVVRAHTALKEI 75

Query: 62   -----------------------------ACAAG--------------IQP----IIGCQ 74
                                         A  AG              ++P    IIG +
Sbjct: 76   REERERQQKEREDKAKAAKAAQAAVPLEDASKAGFIQQEAEEIEDAESLKPLPHLIIGSE 135

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             ++  +                 ++V L +   GY  L EL++        K S R+  S
Sbjct: 136  FNLTDETG-----------EPFCTLVALATNRNGYGNLSELITLARSRAD-KGSYRLGPS 183

Query: 135  WLQE--IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRG 191
               +       L  L       + +           +           R ++ L+    G
Sbjct: 184  DFTDSLPHLAHLQTLPDCVLMLVPQRAAT--LSHTLRCAHWLASFAAQRAWIALELWQTG 241

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D  +   +  ++    LPLVA    L  +       D + A+             +  +
Sbjct: 242  SDDLQIDALRMISKASGLPLVAAGGVLMHARSRKPLQDTMTAIGL-VTPLSACGHALEAN 300

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
                 R+ +        + LE T+ IA  C F L       P  +    +       + L
Sbjct: 301  AERHMRTRVRLGKLYPRDTLEETLRIAALCRFSLDELKYEYPEELVPAGE----SPSSYL 356

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R   +AG   R  +G   K         +++ EL +IA +K+  YFL V D + +A+  N
Sbjct: 357  RKLVMAGAMERWPEGMDLKRIG------QIEKELALIADLKYEKYFLTVHDIVSFARSRN 410

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I    GRGS A S+  Y L +T+IDP++ ++L ERF++  R   PD D+DF   RR+EVI
Sbjct: 411  IL-CQGRGSAANSIVCYCLHVTEIDPVQMNMLIERFISRARNEPPDIDVDFEHQRREEVI 469

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +Y+  KYG  R A   +  +  A++AL+DVG+AL +  S ++R+ K              
Sbjct: 470  QYIYTKYGRHRAALTASLITYHARSALKDVGKALGLEASLIERISKSQQWWDGTDAVAGY 529

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
            +A+                L+ ++++L    RH S H  G VI    LS+LVP+      
Sbjct: 530  LAE----AGFDANSHITQNLIRLTRELRSFPRHLSQHVGGFVIAKDKLSRLVPIENATMK 585

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE--TY 609
            D  V +++   I+   L+K D L L  L+ ++++L+F+A R       +      +   Y
Sbjct: 586  DRSVIEWDKDDIDALKLLKVDVLALGMLSAIRRALEFVALRRGFPQFRVQDIPREDRAVY 645

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNG 667
             +     T+G+FQ+ES   +  L  ++P+   D++  V++ RPGPI   +V+    RK G
Sbjct: 646  EMCGHADTIGVFQIESRAQQSMLPRLKPNKYYDLVIEVAIVRPGPIQGGMVHPYLRRKQG 705

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM-D 726
             E +      + P+L+ T GV I+QEQVM +A + + Y+  +AD LRRAM    +     
Sbjct: 706  LEPVDYAKDELRPVLERTLGVPIFQEQVMHLAMVAAEYTGEQADQLRRAMAAWRRSGNLA 765

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K ++       + G  +     I + +  F +YGF +SHAA++A++ Y +AW+K + P  
Sbjct: 766  KYQKDLNERMLRRGYEQAFIDRICKQIEGFGEYGFPESHAASFALLVYLSAWLKRYEPAA 825

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-----VGDNRI------ 835
            FLA  +  +        +  QDA++  ++I+PP V     +           RI      
Sbjct: 826  FLAGLLNSQPLGFYSPSQLVQDAKRHGVKILPPDVTLSDWESTFERRGHEGRRISSDETC 885

Query: 836  ------YYSLAAIKGVG----------TTTARHIMEAS--------ADKPFDSLEDFCSR 871
                    S   ++ +              A+ +            A  P         R
Sbjct: 886  LHRQQTVLSAQQLRDLSLRRLTVSRTVRRAAQRLTARVFQPSNTYGARGP-------AVR 938

Query: 872  VD---SKKLNRRVLESL--VFAGA-L-DCFGYSRMQLLQ--------------SLDNIQK 910
            +     K L +   E +      A   D    +R   L               S+   ++
Sbjct: 939  IGMHLIKGLTQGAAERIMAARHDAQFTDVDDLARRAALTRRDLEALAAANALVSIAGHRR 998

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
             A W    +      +   +       + L + +    S    ++   LG   + HPL +
Sbjct: 999  EAWWAVTAQHAVPRLL--RDAPIAEAALALPQAAE---SREIVDDYASLGLTLNRHPLAL 1053

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +  L +   +   E  A   G   R   +V  +Q+  T  G+   +V+  +        
Sbjct: 1054 LRARLARQRFRTAAELTACQHGTLARACGIVTVRQRPGTANGT--VFVSIEDETGSINVI 1111

Query: 1031 FFP 1033
             +P
Sbjct: 1112 VWP 1114


>gi|157149864|ref|YP_001450622.1| DNA polymerase III DnaE [Streptococcus gordonii str. Challis substr.
            CH1]
 gi|157074658|gb|ABV09341.1| DNA-directed DNA polymerase III alpha chain [Streptococcus gordonii
            str. Challis substr. CH1]
          Length = 1033

 Score =  465 bits (1195), Expect = e-128,   Method: Composition-based stats.
 Identities = 293/1023 (28%), Positives = 483/1023 (47%), Gaps = 101/1023 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS ++  +S+   ++K        + I D +NL+ A  F ++  AAGIQ ++
Sbjct: 3    AQLDTKTVYSFMDSLVSIKKYVEKAKEFGYSHLGIMDMDNLYGAYHFLEETKAAGIQGLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  L++                     + LL   ++GY+ L+++ + + L  +       
Sbjct: 63   GLDLNLVKDGQPLT-------------LRLLAINSQGYRNLMKVSTLIMLDKKE------ 103

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S + +   +GL ++     G  D                      G   Y+ +     
Sbjct: 104  -WSDI-QHLMQGLALIVPAYPGIDDLDL-------------------GKDYYIGVSPTTP 142

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                    + + +     P +      +    D E   +L A+  +  +  ++   +   
Sbjct: 143  --------LQEFSR----PTLPLYTVRYFDTGDLETLQMLRAIRENVSL--REVGDLPSG 188

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +L    ++  IF          +E   R           LPR       + ++    EL
Sbjct: 189  QHLLRPEQLRQIFEQTFPESLENLEGLVRDIHYDIDTELKLPR------FNPERPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R ++ AGL+ R        G  +  Y++RLD EL VI +M F  YFLIV D +++ +   
Sbjct: 243  RERSEAGLKKR--------GLTSSLYQERLDQELAVIHKMGFDDYFLIVWDLLRFGRSQG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E I
Sbjct: 295  YYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERFTMPDIDIDIPDVYRPEFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG    AQI+T+ +  AK A+RDV +   +   ++  + K I           A
Sbjct: 355  RYVRDRYGTLHAAQIVTYSTFGAKQAIRDVFKRFGVAEYELTNITKKIRFGDN---LNTA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+      
Sbjct: 412  YEKNIAFRQIINSKLEYQKAFDIAKKIEGNPRQTSIHAAGVVMSDNDLTDQIPLKYG--E 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  + + +  I  +D +T  
Sbjct: 470  DMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEAVLKKYEIDIQIESIDLEDKKTLQ 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+G+E 
Sbjct: 530  LFAAGDTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGREA 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +VSI   +D +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM K +E
Sbjct: 590  VVSIDESLDDILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNALEMHKMEE 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+SGA K G S+  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F   
Sbjct: 650  EFVSGAMKLGHSEKKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPEVFFDV 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA  F  ++ P ++NT     K  +N+I+  L  IKG+    A
Sbjct: 710  LLN------YSSSDYITDALSFGFKLAPLTINTVPYRDKFEENQIFLGLKNIKGLPRDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E     PF  +EDF  R+ S+      L  L+  G  D F  +R +++ +L N+  
Sbjct: 764  YWIIEER---PFTGIEDFLLRLPSQYRKESFLIPLIQIGLFDSFESNRQKIISNLSNLFI 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++FA    +++      +    + + +FE EQ +LG   S HPL  
Sbjct: 821  FVEEL--------GSLFADSSYSWT------EVEDYSQAEKFELEQSILGVGLSDHPLM- 865

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +     K +         +  ++ A V S +  +T+ G  + ++  ++  K+ +  
Sbjct: 866  ---TIANATTKSFTWIGDLAENSRAKILAQVQSIKVIRTKNGENMAFLQVTDTKKKLDVT 922

Query: 1031 FFP 1033
             FP
Sbjct: 923  LFP 925


>gi|260574122|ref|ZP_05842127.1| DNA polymerase III, alpha subunit [Rhodobacter sp. SW2]
 gi|259023588|gb|EEW26879.1| DNA polymerase III, alpha subunit [Rhodobacter sp. SW2]
          Length = 929

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 238/978 (24%), Positives = 406/978 (41%), Gaps = 69/978 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV L   S++S L GA     ++ +     QPA+AI D N++   +     A        
Sbjct: 3   FVELSATSNFSFLTGASHPEELMQRAHELGQPALAIADENSVAGIVRAHVAAR------- 55

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
              ++        ++    +          +L      + RL  L++             
Sbjct: 56  ---EIARSDGQAPRLIPAARIVTRDGFVATVLPRDRAAWGRLCRLLTLGRRRAAKGACDL 112

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF-NSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
                                 G                 +     + F  ++ + L  R
Sbjct: 113 GLDDL--------------LDWGEGQEMLLHPARYAGWVAQAGRLARQFPGQVSLLLAPR 158

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247
           + G D  R +++  +A    +P VA+   +       +  DVL A+     V     R  
Sbjct: 159 YDGQDAARFARLEGVAARLGIPTVASALPMMHHGARRKLADVLAAIRLGCRVEQLGRRAL 218

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              +  L++  EM+ +F+    A+  + EIA R  F L      + R+         +  
Sbjct: 219 PHAEQRLRSEPEMLRLFAGFEAAVARSAEIAARLEFSLD-----MLRYEYPSEITEGETA 273

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              L   A AGL  R   G  AK       + +L  EL +I+++ +  YFL V D + +A
Sbjct: 274 AGRLARLAQAGLHWRYPAGIPAKP------QAQLAHELALISKLHYEPYFLTVHDIVAFA 327

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           +   I    GRGS A SV  YAL +T + P   +++FERF++  R   PD D+DF  +RR
Sbjct: 328 RGRGIL-CQGRGSAANSVVCYALGVTSVSPEIGTMVFERFVSEARDEPPDIDVDFEHERR 386

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
           +EVI+++  +YG  R     T    + K A+R+VGRA+ +    +  +   I       +
Sbjct: 387 EEVIQHIYARYGRHRAGLCATVIHYRGKRAVREVGRAMGLSEDTLAAMSSQIWGWGGKGI 446

Query: 488 SLQAIADDSRFREARLADPSVDRLLEIS--QKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                 +D+R RE  L          ++  ++++G  RH S H  G +I +  L +LVP+
Sbjct: 447 ------NDARLREIGLDPADKRLAQTLALVEEIQGFPRHLSQHVGGFIITEGRLDELVPI 500

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-LSLIPFD 604
                 D  V  ++   I+  G++K D L L  L+ ++K+ D L +       L+ +P +
Sbjct: 501 ENATMDDRTVICWDKDDIDALGILKVDILALGMLSCIRKAFDLLEKHHHTRYSLATLPAE 560

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662
           D  TY +L    +LG+FQ+ES      L  M+P    D++  V++ RPGPI   +V+   
Sbjct: 561 DAATYDMLCRADSLGVFQVESRAQMNFLPRMRPRKFYDLVIQVAIIRPGPIQGDMVHPYL 620

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            R+NG+E +      +  +L +T GV ++QEQ MQIA + +G+S  EAD LRRA+    K
Sbjct: 621 RRRNGQEVVTFPSDELGRVLGKTLGVPLFQEQAMQIAIIGAGFSPLEADRLRRALATFKK 680

Query: 723 E-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              +   KERF+ G + NG  +  +   F  +  F  YGF +SHAA++A + Y +AW+K 
Sbjct: 681 HGNVTALKERFLQGMAANGYEEDFSNRCFSQIEGFGSYGFPESHAASFAFLVYASAWIKH 740

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----DNRIYY 837
           H+P  F  A +  +        +  +DAR   ++++PP +N    D  +        +  
Sbjct: 741 HHPGIFACALLNSQPMGFYAPAQIVRDARAHGVRVLPPCINASHWDNVMEACGDQLALRL 800

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
               IKGV    A  I+ A  +  + + ED   R     +    L  L  A        S
Sbjct: 801 GFRQIKGVAEDEALWIVAARGNG-YTAPEDVWRRA---AIPPATLTRLAEADCFASLNLS 856

Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
           R   L +   +            +    +FA++           +F+      +   +  
Sbjct: 857 RRDTLWAARAL----------PADTPLPLFANDIDGEGIIEPNLRFAAMTEGEQVVEDYV 906

Query: 958 VLGFYFSGHPLDVYKPIL 975
            +      HP+ + + +L
Sbjct: 907 AMRLTLRRHPMALLRHLL 924


>gi|325694254|gb|EGD36170.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK150]
          Length = 1069

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 293/1023 (28%), Positives = 482/1023 (47%), Gaps = 98/1023 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 36   IQLDTKTVYSFMDSLVPIKKYVQKAKDLGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 95

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  L +   +                 + LL   ++GY+ L++ VS + ++ Q       
Sbjct: 96   GLDLSLIKAEKEL-------------HLRLLALDSQGYRNLMK-VSTLKMMGQKNWE--- 138

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L +     LI+L                   A   +       G   YV +     
Sbjct: 139  DFQHLFKGLA--LIVL-------------------AFDGVADLD--LGMDFYVGVFPSTP 175

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                              P +  +   +    D E   +L A+  +  +  ++   +   
Sbjct: 176  K------------QEFGRPTLPLHTVRYFDRGDLETLQMLRAIRENASL--REIGSLPNH 221

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +L     +   F +        +E   R +         LPR       + ++    EL
Sbjct: 222  EFLLAPDALAGAFKETFPESLANLEKLVRHAHYDINRELKLPR------FNRERPAVEEL 275

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R ++ AGL+ R        G   + Y++RLD EL VI +M F  YFLIV D +++ +   
Sbjct: 276  RERSEAGLKKR--------GLTGKLYQERLDQELAVIHQMGFDDYFLIVWDLLRFGRSQG 327

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E I
Sbjct: 328  YYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPEFI 387

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +      A
Sbjct: 388  RYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLT---SA 444

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+      
Sbjct: 445  YEKNMAFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPLKYG--E 502

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D ET  
Sbjct: 503  DMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYKVDIEIAEIDLEDVETLK 562

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+G E+
Sbjct: 563  LFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGLEQ 622

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + +E
Sbjct: 623  VELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKSAAEMHRMQE 682

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F   
Sbjct: 683  DFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAFFKAHYPDVFFDV 742

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA  F+ +  P S+N      K  D +I+  L  IKG+    A
Sbjct: 743  MLN------YSSSDYITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLPRDLA 796

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L N+  
Sbjct: 797  YWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLPNLFV 856

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            +A  +         ++FA    ++++          + + +FE EQ ++G   S HPL  
Sbjct: 857  FADEL--------GSLFADTTYSWTEA------QDFSDAEKFELEQSIIGVGLSDHPL-- 900

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                L K   + +         +  R+ A V + +  +T+KG  + ++  S+  K+ +  
Sbjct: 901  --VKLAKEADQPFSWISDLTENSRARILAEVQTIKTIRTKKGENMSFLQVSDTKKKLDVT 958

Query: 1031 FFP 1033
             FP
Sbjct: 959  LFP 961


>gi|325663123|ref|ZP_08151573.1| hypothetical protein HMPREF0490_02314 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470577|gb|EGC73807.1| hypothetical protein HMPREF0490_02314 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 550

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 197/562 (35%), Positives = 312/562 (55%), Gaps = 20/562 (3%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            VH+ YSLL+G+  +   + ++      + AITD   +F  ++F + A AAGI PI+GC+
Sbjct: 2   HVHTEYSLLDGSNKIKEYVARVKELGMNSAAITDHGVMFGVIDFYRAAKAAGINPILGCE 61

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
           + +           G         +VLL    +GYQ L+++VS+ + ++      RI + 
Sbjct: 62  VYVAPGSRFDHEINGGE--DRYYHLVLLAENNQGYQNLMKIVSKGF-VEGYYYKPRIDIE 118

Query: 135 WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYD 193
            L+E   EG+I L+   +G + +       + A++  L ++ +FG    ++ LQ H   +
Sbjct: 119 LLEEYH-EGIIALSACLAGEVQKNLLRGMFEEAKQAALRYESIFGKGNFFLELQDHGLTE 177

Query: 194 RY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
           +     ++++LA    + LVATN+  +   ED + HD+L+ +     ++ ++R R     
Sbjct: 178 QADVNQRLIRLAAETGIELVATNDVHYTYAEDEKPHDILLCIQTGKKLTDENRMRYAGGQ 237

Query: 253 YLKNRSE-MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
           Y     + M+ +F    +ALENT +IA RC   ++     LP++               L
Sbjct: 238 YYVKSEQEMIELFPYARQALENTQKIADRCHVEIEFGVTKLPKYDVPGGM----TSWEYL 293

Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                 GLE R            ++ ++RL +EL+ I  M +  YFLIV DFI++A+ N+
Sbjct: 294 NQLCFEGLERRYPNPG-------EELKERLSYELSTIKNMGYVDYFLIVWDFIKYARDND 346

Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
           I VGPGRGS AGS+ +Y L IT+IDP+R+ LLFERFLNP+R+SMPD DIDFC +RR EVI
Sbjct: 347 ISVGPGRGSAAGSIVSYCLGITNIDPIRYQLLFERFLNPERVSMPDIDIDFCFERRQEVI 406

Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            YV  KYG +RV QI+TFG++ A+  +RDVGR + +PY+ VD + K+IP +    +  +A
Sbjct: 407 DYVVRKYGKDRVVQIVTFGTMAARGVIRDVGRVMDLPYAFVDAIAKMIPTELNITID-KA 465

Query: 492 IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
           +  +  FR+    D  V  L+++S++LEGL RH S HAAG+VI  + + + VP+ R    
Sbjct: 466 LKMNPEFRKMYETDEQVKYLIDMSKRLEGLPRHTSMHAAGVVISQKSVDEYVPLSRAS-D 524

Query: 552 DLPVTQFNMKWIEKAGLIKFDF 573
               TQF M  +E+ GL+K D 
Sbjct: 525 GSITTQFTMTTLEELGLLKMDV 546


>gi|325687799|gb|EGD29819.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK72]
          Length = 1069

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 289/1023 (28%), Positives = 482/1023 (47%), Gaps = 98/1023 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 36   IQLDTKTVYSFMDSLIPIKKYVQKAKELGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 95

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  L +                     + LL   ++GY+ L++ VS + ++ Q       
Sbjct: 96   GLDLSL-------------IKAEQELHLRLLALDSQGYRNLMK-VSTLKMMGQKN----- 136

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                 Q +  +G  ++     G  D                      G   YV +     
Sbjct: 137  -WEDFQHLF-KGFAVIVPAFDGVADLDL-------------------GLDFYVGVFPATP 175

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                              P +  +   +    D E   +L A+  +  + +         
Sbjct: 176  K------------QEFGRPTLPLHTVRYFDTGDLETLQMLRAIRENASLREI-------- 215

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
              L N   +++  +      E   E       +++     + R ++    + ++    EL
Sbjct: 216  GSLPNHEFLLAPDALAGAFKETFPESLANLEKLVRDVHYDINRELKLPRFNRERPAVEEL 275

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            + ++ AGL+         +G   + Y++RLD EL VI +M F  YFLIV D +++ +   
Sbjct: 276  QERSEAGLKK--------RGLTGKLYQERLDQELAVIHQMGFDDYFLIVWDLLRFGRSQG 327

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E I
Sbjct: 328  YYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPEFI 387

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +      A
Sbjct: 388  RYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLT---SA 444

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+      
Sbjct: 445  YEKNMGFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDNDLTDQIPLKYG--E 502

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D +T  
Sbjct: 503  DMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIAEIDLEDADTLK 562

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+G E+
Sbjct: 563  LFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGLEQ 622

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + +E
Sbjct: 623  VELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKSAAEMHRMQE 682

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++GA K G S+T A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F   
Sbjct: 683  DFVAGALKLGHSETKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPDVFFDV 742

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA  F+ +  P S+N      K  D +I+  L  IKG+    A
Sbjct: 743  MLN------YSSSDYITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLPRDLA 796

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L N+  
Sbjct: 797  YWIIEERQNATFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLPNLFV 856

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            +A  +         ++FA    ++++          + + +FE EQ ++G   S HPL  
Sbjct: 857  FADEL--------GSLFADTTYSWTEA------QDFSDAEKFELEQSIIGVGLSDHPL-- 900

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                L K   + +         +  R+ A V S +  +T+KG  + ++  S+  K+ +  
Sbjct: 901  --VKLAKEADQPFSWISDLTENSRARILAEVQSIKTIRTKKGENMAFLQVSDTKKKLDVT 958

Query: 1031 FFP 1033
             FP
Sbjct: 959  LFP 961


>gi|221211167|ref|ZP_03584146.1| error-prone DNA polymerase [Burkholderia multivorans CGD1]
 gi|221168528|gb|EEE00996.1| error-prone DNA polymerase [Burkholderia multivorans CGD1]
          Length = 1060

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 244/881 (27%), Positives = 401/881 (45%), Gaps = 47/881 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P++  L   S++S L GA     ++++        IAITD  +L  A      A AAG+ 
Sbjct: 3   PAYAELFCRSNFSFLHGASHAEELVERAVDLGYRGIAITDECSLAGAPRMHVAARAAGLP 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIG   ++   +       G  P P    +VLL    EGY  L EL+S    +   K +
Sbjct: 63  LIIGSYFEVTPDE----APPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMAAPKGT 117

Query: 129 VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            ++    L     E   L  +    +  +    +   + V + ++  F+  FG+R  + L
Sbjct: 118 YKLTPRMLSRPPEEFAHLRGMPDCFAILVP--VYPVRADVLDAQVAWFRATFGERARLGL 175

Query: 187 -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV-VSQKD 244
            Q  R  D  +  ++        + +VA  +            DV+ A+           
Sbjct: 176 VQLQRALDGPQREEIRAAGARRGVRVVALGDVTMHKRSCKPLQDVMTAIRLGMPVSECGY 235

Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                 + +L++R+ + ++FS    A   T  I   C F L+      P  +        
Sbjct: 236 ALAPNAEQHLRSRARIATLFSADEIA--QTCAILDACHFSLKELEYEYPLELVPRG---- 289

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               + LR +  AG+  R   G        +   +++  EL +IA++ +  +FL V D +
Sbjct: 290 HTPTSYLRQETWAGVARRYWNGV------PEKVAKQIRHELALIAKLNYEPFFLTVYDIV 343

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           ++A+  NI    GRGS A SV  Y L IT+++P + ++LFERF++ +R   PD D+DF  
Sbjct: 344 KFARSQNIL-CQGRGSAANSVVCYCLGITEVNPEQSTMLFERFISVERGERPDIDVDFEH 402

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            RR+EVI+++  KYG +R A      + + +  LR+VG+AL +    VDR+ K       
Sbjct: 403 QRREEVIQHIYKKYGKDRAALAAAVSTYRPRGVLREVGKALGVDPMLVDRVAKGHRWFDG 462

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
               LQ               P +    E++ +L    RH S H+ G VI    L++LVP
Sbjct: 463 SRDLLQQFEMV----GLDPVTPLIRTWAELAARLLNFPRHLSQHSGGFVISRGKLTRLVP 518

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG------VKVDL 598
           +         V Q++   +E  GL+K D L L  L+ L ++ D                L
Sbjct: 519 VENAAMDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMRTAWRGPAADGKPFTL 578

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID-- 656
             IP +D  TY ++    T+G+FQ+ES      L  +QP    D++  V++ RPGPI   
Sbjct: 579 KHIPQEDKATYDMICRADTVGVFQIESRAQMSMLPRLQPRTYYDLVIEVAIVRPGPIQGG 638

Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            +  Y  R+ G EKI      + P L+ T GV I+QEQVMQIA + +G++  EAD LRRA
Sbjct: 639 AVHPYLRRRQGLEKISYPKDDLKPALERTMGVPIFQEQVMQIAMIAAGFTAGEADGLRRA 698

Query: 717 MGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
           M     K ++ K  ++ ++G  + G ++  A  IFE +  F +YGF +SHAA++A ++Y 
Sbjct: 699 MAAWKRKGDLGKYHDQIVNGMLERGYTREFAEQIFEQIKGFGEYGFPESHAASFAKLAYA 758

Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---- 831
           ++W+K H P  F+AA +  +        +  QDAR+  + + P  V     +  +     
Sbjct: 759 SSWLKCHEPAIFVAALLNSQPMGFYAPAQLVQDARRHGVTVFPVDVTKSNWETSLEALPG 818

Query: 832 ------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
                 D  +   L+ ++G G   AR I  A A  PF++++
Sbjct: 819 ATPPEGDPAVRLGLSLVRGFGEAAARRIEAARAAGPFENVD 859


>gi|213965050|ref|ZP_03393249.1| DNA polymerase III, alpha subunit [Corynebacterium amycolatum SK46]
 gi|213952586|gb|EEB63969.1| DNA polymerase III, alpha subunit [Corynebacterium amycolatum SK46]
          Length = 1079

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 268/1034 (25%), Positives = 422/1034 (40%), Gaps = 98/1034 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   SSYS L GA     ++ + A      + + D +  +                  
Sbjct: 76   AELHCRSSYSFLHGASDPEELVSEAARLGLNVLGLADRDGFYGI---------------- 119

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
              +      +    T  G         + +L    EGY+RL   +   ++    K  VR 
Sbjct: 120  -ARFAEAAAEAGIATIIGAELGLPQRPLTVLGRGPEGYRRLSHTLCDAHMSAGEKSVVRY 178

Query: 132  C-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
              L  L E       +L       +               L      FG + + +   R 
Sbjct: 179  PSLPELGEAAGGFWQVL--ADVSWVGD-------------LEMLIAAFGAENVALE-HRV 222

Query: 190  RGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEA--HDVLMAVAHSTVVSQKDR 245
                +  +   ++   A  + L  V ++ +   S            +AV       +   
Sbjct: 223  SPTAQAADDAEEISTAAVKYGLREVVSSAATAASPAASRLAGAKQALAVREDLDGFESRL 282

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                            +      + ++ T +IA  C+F L + AP LPR+      D   
Sbjct: 283  EPAGGAWLRSWEELSAATRYLGAQVVQTTQDIAGECAFTLDLIAPELPRWEVPAGHD--- 339

Query: 306  EEENELRNKAVAG-LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             E++ LR  A AG             G        +L+ EL VI  + F GYFLIV D  
Sbjct: 340  -EDSWLREIARAGARRRYGPVDGAGDGSVQARAWAQLENELTVIRELGFPGYFLIVHDIC 398

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++ ++  I    GRGS A SV  +AL IT++DP+   LLFERFL+P+R   PD D+D   
Sbjct: 399  EFCRRTGIL-AQGRGSAANSVVCFALGITNVDPISAGLLFERFLSPERDGPPDIDVDIES 457

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR+EVI+YV  KYG +  AQ+    + + + ALRD  R L      +D   +     P 
Sbjct: 458  GRREEVIQYVYEKYGRDNAAQVANVITYRRRGALRDAARVLGYSPGVIDAWVRDREACPT 517

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             P                        + +++++L G  RH   H+ G+VI DRP++ +VP
Sbjct: 518  EP------------------------VRQLAEQLRGQPRHLGIHSGGMVICDRPIADVVP 553

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPF 603
            +         V Q++      AGL+KFD LGL  L  +   +D    Q G +V+L  I  
Sbjct: 554  VEWARMEGRSVVQWDKDDCAAAGLVKFDLLGLGMLEAIHHCIDLVYEQHGRRVNLWEIDV 613

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVY 661
             + E Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y
Sbjct: 614  AEPEVYEMLARADAVGVFQVESRAQLATLPRLKPREFFDLVVEVALIRPGPIQGGSVHPY 673

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKK 720
              R+NG E +   HP+++  L +T G+ ++QEQ+MQ+A   +G+S +EAD LRRAM  K+
Sbjct: 674  IRRRNGLEPVTYEHPVLEKSLGKTLGIPLFQEQLMQMAVDAAGFSGAEADSLRRAMGSKR 733

Query: 721  IKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
               +M+    RF++G    +GI + +   ++  +  FA YGF +SHA ++A + Y +AW 
Sbjct: 734  SVAKMEALHARFLAGLERTSGIDEDVGEQLWNKIVAFAAYGFPESHAQSFASLVYFSAWF 793

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K HYP EF  A +  +       +    DAR+  I    P +    V+  V D RI   L
Sbjct: 794  KYHYPAEFCVALLRAQPMGFYSPQSLIADARRHGIGCDGPDIALSGVEASVIDGRIRLGL 853

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             AI GVG   A  I+ A    PF +  D   R    +L    +E+L  AGAL   G  R 
Sbjct: 854  GAIAGVGNDVAERIVAAR---PFVNAADVARRA---RLGVGHMEALARAGALGSLGIDRR 907

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            Q L         A  V    +            T +D   L   +          +    
Sbjct: 908  QALW--------AAGVAATESEGMLP-----GLTLADAPALPGMTEF---ELAAADLMAT 951

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G     +P+   +  L++ G+    E  A   G  + +A +V  +Q+  T  G  + ++ 
Sbjct: 952  GVTPGQYPVAALREDLQERGVVPAAELKAVPDGTRVEVAGVVTHRQRPGTAGG--VTFLG 1009

Query: 1020 FSEPAKEYEANFFP 1033
              +          P
Sbjct: 1010 MEDETGLVNVLCTP 1023


>gi|298500380|ref|ZP_07010185.1| DNA polymerase III subunit alpha [Vibrio cholerae MAK 757]
 gi|297541073|gb|EFH77127.1| DNA polymerase III subunit alpha [Vibrio cholerae MAK 757]
          Length = 637

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 263/655 (40%), Positives = 385/655 (58%), Gaps = 28/655 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +   P F+HL++HS +S+++G   +  ++ K+AA   PA+A+TD  NL   ++F   A  
Sbjct: 1   MSD-PKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHN 59

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G++PIIG    +          Q +     +  + LL     GY+ L  L+S+ YL   
Sbjct: 60  CGVKPIIGADFTL----------QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGH 109

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            +    I  +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+
Sbjct: 110 VQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYL 168

Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            L R    D        + +A  ++LP+VATN  +F++EE +EAH++ +A+     +   
Sbjct: 169 ELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDP 228

Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            RP+  +P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++       +       
Sbjct: 229 RRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPT 283

Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                E+ L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLI
Sbjct: 284 GGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLI 343

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD
Sbjct: 344 VMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFD 403

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           +DFC D+RD+VI +V   YG + V+QIITFG++ AKA +RDVGR L  P+  VDR+ KL+
Sbjct: 404 VDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLV 463

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
           P DP   +    IA +   +E   AD  V  L++  + LEG  R+A  HA G+VI    +
Sbjct: 464 PPDPGMTLEKAFIA-EPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAI 522

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-----GV 594
           +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L  +  R       
Sbjct: 523 TDFAPIYCDAEGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKP 582

Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            V +  IP DD  ++  L    T  +FQLES GM++ ++ +QPDC EDIIALV+L
Sbjct: 583 PVRIEAIPLDDARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVAL 637


>gi|325689997|gb|EGD32001.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis SK115]
          Length = 1069

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 290/1023 (28%), Positives = 482/1023 (47%), Gaps = 98/1023 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 36   IQLDTKTVYSFMDSLIPIKKYVQKAKDLGYSHLGMMDADNLYGAYHFLEEAESAGLQPLL 95

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  L +   +                 + LL   ++GY+ L++ VS + ++ Q       
Sbjct: 96   GLDLSLIKAEKEL-------------HLRLLALDSQGYRNLMK-VSTLKMMGQKN----- 136

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                 Q +  +GL ++    +G  D                      G   YV +     
Sbjct: 137  -WEDFQHLF-KGLAVIVPAFNGVADLDL-------------------GLDFYVGVFPATP 175

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                              P +  +   +    D E   +L A+  +  +  ++   +   
Sbjct: 176  K------------QEFSRPTLPLHTVRYFDTGDLETLQMLRAIRENASL--REIGSLPNH 221

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +L     +   F +        +E   R           LPR       + ++    EL
Sbjct: 222  EFLLAPDALAGAFKETFPESLANLEKLVRHVHYDINRELKLPR------FNRERPAVEEL 275

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R ++ AGL+         +G   + Y++RLD EL VI +M F  YFLIV D +++ +   
Sbjct: 276  RERSEAGLKK--------RGLTGKLYQERLDQELAVIHQMGFDDYFLIVWDLLRFGRSQG 327

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E I
Sbjct: 328  YYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPEFI 387

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +      A
Sbjct: 388  RYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLT---SA 444

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+      
Sbjct: 445  YEKNMAFRQIINSKLEYQKAFDIAKKIEGHPRQTSIHAAGVVMSDSDLTDQIPLKYG--E 502

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L +  V ++++ I  +D +T  
Sbjct: 503  DMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKYEVDIEIADIDLEDADTLK 562

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+G E+
Sbjct: 563  LFAAGQTKGIFQFEQPGAISLLKRVQPICFEEVVATTSLNRPGASDYIDNFVKRKHGLEQ 622

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM + +E
Sbjct: 623  VELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKSAAEMHRMQE 682

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F   
Sbjct: 683  DFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPDVFFDV 742

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA  F+ +  P S+N      K  D +I+  L  IKG+    A
Sbjct: 743  MLN------YSSSDYITDALSFDFETAPLSINNIPYHDKFQDKKIFLGLKNIKGLPRDLA 796

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   +  F  +EDF  R+        +L  L+  G  D F  +R ++L +L N+  
Sbjct: 797  YWIIEERQNAVFTGVEDFILRLPQNYHKIPLLTPLIQLGLFDSFEKNRQKILANLPNLFV 856

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            +A  +         ++FA    ++++          + + +FE EQ ++G   S HPL  
Sbjct: 857  FADEL--------GSLFADTTYSWTEA------QDFSDTEKFELEQSIIGVGLSDHPL-- 900

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                L K   + +         +  R+ A V + +  +T+ G  + ++  S+  K+ +  
Sbjct: 901  --VKLAKEAAQPFSWIAELTENSRARILAEVQTIKTIRTKNGENMAFLQVSDTKKKLDVT 958

Query: 1031 FFP 1033
             FP
Sbjct: 959  LFP 961


>gi|320546638|ref|ZP_08040950.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus equinus
            ATCC 9812]
 gi|320448693|gb|EFW89424.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus equinus
            ATCC 9812]
          Length = 1035

 Score =  463 bits (1190), Expect = e-127,   Method: Composition-based stats.
 Identities = 274/1025 (26%), Positives = 469/1025 (45%), Gaps = 101/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   + +        I I D +NL++A  F + A   GI+P+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLEGYVKEAKVLGYQTIGIMDKDNLYAAFHFIEIAKKQGIRPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L +D+Q+NL +T              L+    +GY+ L+++ SR            
Sbjct: 62   LGLELTLDIQENLSVTFY------------LIARDTQGYKNLMKVSSRQMTNG------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L  L +   +G+ ++                 +  E   + F        Y+ +  H 
Sbjct: 103  IQLEDLNDYL-QGIAVIIPY-------------FEDLESISVPF------DYYIGVDIHS 142

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                            +  P++  +   + +  + E   +L A+  +  +          
Sbjct: 143  EE------------REYNKPILPLHTVRYFNTNEVETLHMLHAIRDNVSLKDAPLVPQNQ 190

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                 +                    ++                  +          + E
Sbjct: 191  HLVACDILTQAFEQKFPKALENLEQLVSTIQYDFNSELKLPRFNRQKP--------AQEE 242

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L     +GL+ +        G    +Y++RL  EL+VI +M F  YFLIV D +++ +  
Sbjct: 243  LVELTQSGLKEK--------GLWLLEYQERLSKELSVIHKMGFDDYFLIVWDLLRFGRSR 294

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ +YAL IT IDP++ +LLFERFLN +R SMPD DID     R E 
Sbjct: 295  GYYMGMGRGSAAGSLVSYALDITGIDPVKNNLLFERFLNEERYSMPDIDIDLPDVYRSEF 354

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV+N+YG    AQI+TF +  AK A+RDV +    P  ++  + K I           
Sbjct: 355  LHYVRNRYGSLHSAQIVTFSTFGAKQAIRDVFKRFGAPEHELTNITKKISFRDNLTT--- 411

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+   +     +   I++++EG  R  S HAAG+V+ D  L++ +P+     
Sbjct: 412  VYEKNLSFRQIINSKIEYQKAFAIAKRIEGNPRQTSIHAAGVVMSDDNLTEHIPL--KAG 469

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETY 609
             D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  + +A+     +D+  I  +D +T 
Sbjct: 470  EDMMITQYDASAVEANGLLKMDFLGLRNLTFVQRMQEKVAKDYDVNIDIKSINLEDKKTL 529

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E +G    L+ ++P   EDI+A  SL RPG  D    +  R+  KE
Sbjct: 530  ALFAAGRTKGIFQFEQAGAINLLKRIKPRKFEDIVATTSLNRPGASDYTENFIKRRFRKE 589

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +  I PL+  +L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  E+M K +
Sbjct: 590  TVDLIDPLVAHILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKKVEDMQKME 649

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              F+ GA   G    +A ++F  +AKFA YGFN+SHA AY+ +++Q A+ K HYP  F  
Sbjct: 650  SEFLKGAQSLGRPLDVAKDLFSRMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFYD 709

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +            +  DA +    +    +NT   + K+ D RIY  L  +KGV    
Sbjct: 710  VMLN------YSSADYITDALESEFSVNKIDINTVPYNDKISDGRIYLGLKNLKGVPRDM 763

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               I+E   ++PF S+EDF +++      +  +  L+  GA D F  +R +++++L+ + 
Sbjct: 764  CYWIIE---NRPFSSIEDFLTKLPENYQKKEFVTPLIEIGAFDKFEKNRRKIIENLEPLF 820

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             +   +         ++FA    ++       +    +S+ ++  EQ +LG   S HPL 
Sbjct: 821  MFVNEL--------GSLFAETSYSWI------EVEDFSSAEKYRQEQGLLGVGISPHPLL 866

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYE 1028
                 + K     +             +   +   +  +T+ KG ++ ++  ++  K+++
Sbjct: 867  ----EIAKKSSVSFTALADLHENTEATILVELNQIRVIRTKTKGEQMAFLNVTDMKKKFD 922

Query: 1029 ANFFP 1033
               FP
Sbjct: 923  VTLFP 927


>gi|306829373|ref|ZP_07462563.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus mitis
            ATCC 6249]
 gi|304428459|gb|EFM31549.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus mitis
            ATCC 6249]
          Length = 1033

 Score =  463 bits (1190), Expect = e-127,   Method: Composition-based stats.
 Identities = 290/1023 (28%), Positives = 480/1023 (46%), Gaps = 103/1023 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +AI D +NL+ A  F +     GIQP+I
Sbjct: 3    AQLDTKTVYSFMESVVSIEKYVHTAKDYGYSHLAIMDVDNLYGAYHFLEVTRKYGIQPLI 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + +                    L  + +GYQ L++L +        K + R 
Sbjct: 63   GLEITLIIDEKAISFR-------------FLALSTKGYQELMKLSTL-------KMTGRK 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S       E + ++     G ID+                     G   ++ +     
Sbjct: 103  NWSDFTS-HLEDVAVIVPYYDG-IDQLDL------------------GHDYFIGVS---- 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D ++E            P++         +ED +   +L AV  +  +          +
Sbjct: 139  PDTHQEV--------FTKPILPLYQVNSFEKEDIQVLQILSAVKDNVSL---------RE 181

Query: 252  HYLKNRSEMVSIFSDLPEALENT-VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              + ++  +    SDL    +N   +       +++  +  L   ++    + ++    E
Sbjct: 182  VDVHSQQGIFLPASDLEARFKNRFPQSLANLQDLIENVSYQLDPSLKLPRFNPERPAVEE 241

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR +A  G         IAK   +  Y++RL+ EL VI  M F  YFL+V D +++ +  
Sbjct: 242  LRERAEQG--------LIAKELTSVLYQERLNEELAVIHDMGFDDYFLVVWDLLRFGRSQ 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS  GS+ AY+L IT IDP+  +L+FERFLN +R +MPD DID     R E 
Sbjct: 294  GYYMGMGRGSAVGSLVAYSLDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDLYRPEF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            IRYV+++YG + VAQI+T+ +  AK A+RDV +   +P  ++  + K I           
Sbjct: 354  IRYVRDRYGSQHVAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITKKISF---RDTLTT 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   + +FR+   +     +  EI++K+EG  R  S HAAG+V+ D+ L+  +P+     
Sbjct: 411  AYEKNLQFRQVINSKIEYQKAFEIARKIEGYPRQTSIHAAGVVMSDQDLTDYIPLKYG-- 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETY 609
             D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + LA+       +  I  +D ET 
Sbjct: 469  EDMLITQYDAHGVEANGLLKMDFLGLRNLTFVQKMQELLAESEGVHLKIEEIDLEDSETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L +   T GIFQ E  G  + L+ ++P   E+++A  SL RPG  D I  +  RK+GKE
Sbjct: 529  ALFSAGNTKGIFQFEQPGAIRLLKRVKPQVFEEVVATTSLNRPGASDYIDNFVARKHGKE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  + P ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK  +EM   K
Sbjct: 589  KVTVLDPTLEDILSSTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAKEMHLMK 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E FI+GA K G S+  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F  
Sbjct: 649  EDFIAGAVKLGHSEEKANQVFAVMEKFAGYGFNRSHAYAYSSLAFQLAYFKTHYPAIFFQ 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +            +  DA Q    + P ++N+     K+   +IY  L  IKG+    
Sbjct: 709  VMLN------YSSSDYIVDALQMGFDVAPLAINSIPYHDKIAQKKIYLGLKTIKGMPRDF 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            +  I+E   ++PF S+EDF +R+        +L  LV  G  D F  +R ++L +L N+ 
Sbjct: 763  SYWIIE---NRPFSSVEDFVTRLPKNYKKLSLLSPLVELGLFDDFDKNRQKILVNLPNLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             + + +          +FA    ++++            + +F  EQ ++G   S HPL 
Sbjct: 820  VFVEEL--------GGLFADASYSWTEA------DDFTEAEKFYKEQELIGVGISAHPLQ 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                                  G+++ L   V   +  +T+KG  + ++   +   + + 
Sbjct: 866  TLAKQ-ALYSTTPIATLTE---GSHVTLLVEVQKIKVIRTKKGENMAFLQVHDSKSKLDV 921

Query: 1030 NFF 1032
              F
Sbjct: 922  TVF 924


>gi|330942778|gb|EGH45303.1| error-prone DNA polymerase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 873

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 239/888 (26%), Positives = 403/888 (45%), Gaps = 54/888 (6%)

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSL 218
                +Q         ++ F +RL++ +  HRG D   R + ++ LA +  +P VA+ +  
Sbjct: 8    LDGDAQACLAGGRWLRERFTERLWLGVGLHRGPDDEQRLADLLALAQSLGIPAVASGDVH 67

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
              +       D + A+ H T V++         + +L+    +   + D   A   +V I
Sbjct: 68   MHARGRRALQDTMTAIRHHTTVAEAGHLLFANGERHLRPLDALSEHYPDWLLA--ESVRI 125

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
            ARRC+F L       P  +  +     +   + LR     G+  R   G           
Sbjct: 126  ARRCTFDLGDLKYEYPHELVPKG----QTSTSWLRELTERGVRRRWPSGL------TPAT 175

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            R +++ EL +IA  KF  YFL V D +++A+  +I    GRGS A S   YAL IT+++P
Sbjct: 176  RAQVEKELALIAEKKFDSYFLTVHDIVEFARSQHIL-CQGRGSAANSAVCYALGITELNP 234

Query: 398  LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
             + +LLFERF++ +R   PD D+DF  DRR+EVI+Y+  +YG  R A      +     A
Sbjct: 235  EQSNLLFERFISRERNEPPDIDVDFEHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGA 294

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
            +RDV + L +P  Q++ L +          S + + +           P + R+L ++ +
Sbjct: 295  MRDVAKVLGLPPDQINALAEAFSRWSDSLPSPERLREY----GFDADTPILKRVLALTGE 350

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            L G  RH S H  G VI + PL  LVP+     +D  + Q++   ++  GL+K D L L 
Sbjct: 351  LIGFPRHLSQHPGGFVISEHPLETLVPVENAAMADRTIIQWDKDDLDLVGLLKVDILALG 410

Query: 578  TLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
             L+ L+++ D +   RG +  L+ +P DD +TY +++   T+G+FQ+ES      L  ++
Sbjct: 411  MLSALRRTFDLVHLHRGQRWTLATLPGDDRKTYEMISRADTVGVFQIESRAQMAMLPRLR 470

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
            P+   D++  V++ RPGPI   +V+    R+NG+E +    P ++ + K T GV ++QEQ
Sbjct: 471  PEKFYDLVIEVAIVRPGPIQGDMVHPYLRRRNGEEAVTYP-PKLESVFKRTLGVPLFQEQ 529

Query: 695  VMQIAQLLSGYSLSEADVLRRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELL 753
            VM++A L + Y+  EAD LRRAM    +    +  +ER  +G  KNG     A  IFE +
Sbjct: 530  VMEVAILAADYTPGEADELRRAMAAWKRHGGLEPHRERLRTGMLKNGYEADFADRIFEQI 589

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              F  YGF +SHAA++A+++Y + W+K H P  F  A +           +  QDAR+ +
Sbjct: 590  KGFGSYGFPESHAASFALLTYASCWLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHH 649

Query: 814  IQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
            I+I P  V     D  +          +  I   L  ++      A  I  A A +PF  
Sbjct: 650  IEIRPVDVRYSDWDCSLEPLDHPDRTRNLAIRLGLRMVRSFREEDALRIEAARAKRPFVD 709

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
              D   R +   L+ R  E+L  +GAL      R +    +  +                
Sbjct: 710  ATDLTLRAE---LDSRAAEALADSGALRGLIGHRHRARWEVAGV------------EAQR 754

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
             +F       +  I      +   +     +   LG     HPL + +  L     +  +
Sbjct: 755  PLFDDLPSEETQVI----LPLPTVAEDLVADYTTLGTTLGPHPLALLRRQLAAKRFRSSQ 810

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +       + +A +V+ +Q+  T  G  + +VT  +         +
Sbjct: 811  DLLHLENDRTLSVAGLVIGRQRPGTASG--VTFVTLEDEFGMVNVVVW 856


>gi|50914323|ref|YP_060295.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS10394]
 gi|73919250|sp|Q5XBV1|DPO3A_STRP6 RecName: Full=DNA polymerase III subunit alpha
 gi|50903397|gb|AAT87112.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10394]
          Length = 1036

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 290/1026 (28%), Positives = 498/1026 (48%), Gaps = 102/1026 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVL-------------LNLIAQNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L +   EG+ ++   S G  D                          Y+ +    
Sbjct: 102  LHMDYLCQ-HLEGIAVII-PSKGWSDTLVV------------------PFDYYIGV---- 137

Query: 191  GYDRYRESQVVQL-AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D+Y  + +  + +    +PL       + +++D E   +L A+  + +   +     +
Sbjct: 138  --DQY--TDLSHMDSKRQLIPL---RTVRYFAQDDMETLHMLHAIRDN-LSLAETPVVES 189

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                   +       +  P+AL+N  ++     +    +  +          +  K  + 
Sbjct: 190  DQELADCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLKLPH-------FNRDKSAKQ 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL+    AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELQELTEAGLKE--------KGLWKEPYQSRLLHELIIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I          
Sbjct: 355  FLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGF---KDSLA 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 412  TVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPL--KS 469

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+    ++D++ I  +D +T
Sbjct: 470  GDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDPQT 529

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ G+
Sbjct: 530  LALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQ 589

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM K 
Sbjct: 590  EKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQKM 649

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 650  EEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 709

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M            +  DA + + Q+   ++N+     K+  ++IY  L  IKG+   
Sbjct: 710  DIMMN------YSSSDYITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRD 763

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E     PF+S+EDF +R   K   +  LE L+  G  DCF  +R ++L +LD +
Sbjct: 764  FAYWIIEQR---PFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNLDGL 820

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +   +         ++F+    ++ D          +++ ++  EQ V+G   S HPL
Sbjct: 821  LVFVNEL--------GSLFSDSSFSWVDT------QDYSATEKYSLEQEVVGVGMSKHPL 866

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +  I+ +      ++ +   +   + S +  +T+  G ++ +++ ++  K+ 
Sbjct: 867  ----IDIAEKSIQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKL 922

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 923  DVTLFP 928


>gi|306831259|ref|ZP_07464419.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            gallolyticus subsp. gallolyticus TX20005]
 gi|304426495|gb|EFM29607.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            gallolyticus subsp. gallolyticus TX20005]
          Length = 1035

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 285/1025 (27%), Positives = 480/1025 (46%), Gaps = 101/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   +    +     I I D +NL++A  F ++A    +QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLEGYVKAAKSLGYQTIGIMDKDNLYAAFHFIEEAKKQSLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L   +++ L +             + LL     GY+ L+++ S+    D       
Sbjct: 62   VGLELSFAVEETLSLK------------LYLLAQDTTGYKNLMKISSKQMSSD------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L  L +        LTG        A      +  E   L F        Y+ +  + 
Sbjct: 103  IQLDELSDY-------LTG-------VAIVVPYFEELETLSLPF------DYYIGVDVNS 142

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                            +E P+       +    + E   +L A+  +  +          
Sbjct: 143  PQ------------KAYEKPIFPLYTVRYFETNEVETLHMLHAIRDNISLKDAPPASQGQ 190

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            +    +     +     P+ALEN  ++     +       +          + QK  + E
Sbjct: 191  NLLACDI-LTQAFRETFPQALENQEKLVSNIHYEFDTDLKLPR-------FNRQKPAQEE 242

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L  +  AGL         AK      Y++RL  EL+VI +M F  YFLIV D +++ +  
Sbjct: 243  LIERTEAGLR--------AKNLWLPAYQERLKKELSVIHKMGFDDYFLIVWDLLRFGRSR 294

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ +YAL IT IDP++ +LLFERFLN +R SMPD DID     R E 
Sbjct: 295  GYYMGMGRGSAAGSLVSYALDITGIDPVKNNLLFERFLNEERYSMPDIDIDLPDVYRSEF 354

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV+N+YG    AQI+TF +  AK A+RDV +    P  ++  + K I           
Sbjct: 355  LHYVRNRYGSLHSAQIVTFSTFGAKQAIRDVFKRFGAPEHELTNITKKISF---RDTLTS 411

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+   +     +   I++++EG  R  S HAAG+V+ D  L++ +P+     
Sbjct: 412  VYEKNLSFRQIINSKIEYQKAFAIAKRIEGNPRQTSIHAAGVVMSDDNLTEHIPL--KAG 469

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             D+ +TQ++ + +E  GL+K DFLGL+ LT +Q+  + +A+   V +D+  I  +D +T 
Sbjct: 470  EDMMITQYDAQAVEANGLLKMDFLGLRNLTFVQRMQEKVAKDYGVTIDIKSIDLEDKKTL 529

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E +G    L+ +QP   EDI+A  SL RPG  D    +  R+ G+E
Sbjct: 530  ELFAAGKTKGIFQFEQAGAINLLKRIQPRQFEDIVATTSLNRPGASDYTENFIKRRFGQE 589

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  I PL+ P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  ++M K +
Sbjct: 590  EVDLIDPLVAPILEPTYGIMLYQEQVMQIAQIYAGFTLGKADLLRRAMSKKKADDMQKME 649

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              F+ G+ + G     A ++F  +AKFA YGFN+SHA AY+ +++Q A+ K HYP  F  
Sbjct: 650  SDFLEGSQRLGRPLETAKDLFSRMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFYD 709

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +            +  DA     ++    +NT     K+ D +IY  L  ++GV    
Sbjct: 710  VMLN------YSSADYITDALDSQFKVKKIDINTVPYSDKISDGQIYLGLKNLRGVPRDL 763

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               I+E   ++PF S+EDF +R+      R ++  LV  GA D F  +R +++++LD + 
Sbjct: 764  CYWIIE---NRPFSSVEDFLTRLPENYQKREMITPLVEVGAFDQFDKNRRKIIENLDPLL 820

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             +   +         ++FA    ++ +           ++ ++  EQ +LG   S HPL 
Sbjct: 821  IFVNEL--------GSLFADTSYSWIET------EDYPNAEKYRLEQSLLGVGISPHPLL 866

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYE 1028
                 + +   K +             +   +   +  +T+ KG ++ +++ ++  K+++
Sbjct: 867  ----EIARQSTKDFTALADLQENTEATILVELNQIRVIRTKTKGEQMAFLSVTDTQKKFD 922

Query: 1029 ANFFP 1033
               FP
Sbjct: 923  VTLFP 927


>gi|126724469|ref|ZP_01740312.1| DNA polymerase III, alpha subunit [Rhodobacterales bacterium
            HTCC2150]
 gi|126705633|gb|EBA04723.1| DNA polymerase III, alpha subunit [Rhodobacterales bacterium
            HTCC2150]
          Length = 1009

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 241/1007 (23%), Positives = 423/1007 (42%), Gaps = 72/1007 (7%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +F  L + ++++ L G       + + A    PA+A+ D N++   +    +A     + 
Sbjct: 43   AFSELCITTNFTFLTGGSHGEEYVQQGAGFGMPAVAVADLNSVAGVVRAHCEAREVA-RL 101

Query: 70   I----------IG--------CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
            I          +G          +  D+    ++    +        +  L     G+  
Sbjct: 102  IALRRVADADPVGPARPDDIDAPVSFDIYATPRVIPGARLMTDLGYQVTALPLNRLGWGN 161

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L  ++S   L    K    I L  +   G + +++L   S+         N +  A + L
Sbjct: 162  LCRMLSEGRLRAA-KGECLIRLDDIVRWGGDLVLLLHPPSA--------MNKATGAREWL 212

Query: 172  ---LTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                  ++ FG  + V L   + G DR R  +  + A    +P VA+   +    +  + 
Sbjct: 213  AQSARLRRRFGAEMSVVLAPLYDGQDRARFQRHAKWAADLGVPTVASARPIMHIAQRRKL 272

Query: 228  HDVLMAVAHSTVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
             DVL AV  S  V    R  +   +  L+  +EM  +F    +A++   EIA RC F L 
Sbjct: 273  VDVLTAVRTSCKVIDLGRAAQANAEQRLRPEAEMRRLFKGHEDAVDRAGEIAARCQFSLD 332

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
                   R+         +     L   A  GL  R   G            + L  EL 
Sbjct: 333  E-----LRYEYPSEVSGGETPTERLARLAQEGLRWRYPSG------TPDRVTKLLAHELT 381

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
            +I ++++  YFL V D + +A+   I    GRGS A SV  + L +T + P   +++FER
Sbjct: 382  LIGKLEYEPYFLTVHDIVAFARSRGIL-CQGRGSAANSVVCFLLGVTSVSPEVGTMVFER 440

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            F++  R   PD D+DF  +RR+EVI+++  +YG  R     T    + K A+R+VG A+ 
Sbjct: 441  FVSEARNEPPDIDVDFEHERREEVIQHIYERYGRHRAGLCATVVHYRGKRAIREVGHAMG 500

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
            +    V  L   +    A   + + + +         ADP + ++L++  +++G  RH S
Sbjct: 501  LSDDVVAALSSQMWGWGASGPADERLREI----GLDPADPKLMQVLDLVGQVQGFPRHLS 556

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             H  G +I +  L +LVP+      D  V  ++   I+  G++K D L L  L+ ++K+ 
Sbjct: 557  QHVGGFIITEGRLDELVPVENATMEDRTVICWDKDDIDTLGILKVDVLALGMLSCIRKAF 616

Query: 587  DF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            D        + +L+ +P +D   Y +L    ++G+FQ+ES      L  M+P C  D++ 
Sbjct: 617  DLIQTHHQTEFNLATLPPEDPAVYDMLCKADSVGVFQVESRAQMNFLPRMRPRCFYDLVI 676

Query: 646  LVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
             V++ RPGPI   +V+    R+NG+E +      +  +L +T GV ++QEQ MQIA + +
Sbjct: 677  EVAIIRPGPIQGDMVHPYIRRRNGEEPVSFPSDELGAVLSKTLGVPLFQEQAMQIAIIGA 736

Query: 704  GYSLSEADVLRRAMGKKIK-EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            G++  EAD LRRA+    K  ++    +RFI G  KNG  +  A   F  +  F  YGF 
Sbjct: 737  GFTPDEADRLRRALATFKKLGKVSSFYDRFIRGMLKNGYERDFAERCFSQIEGFGSYGFP 796

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            +SHAA++A++ Y +AW+K H+P  F  A +  +        +  +DAR+  +++ P  +N
Sbjct: 797  ESHAASFALLVYASAWIKCHHPGIFACALLNSQPMGFYAPAQIVRDAREHGVKVRPVCIN 856

Query: 823  TPCVDFKVG-----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
                   +         +      IK +       I  A  +  + ++ED   R  ++  
Sbjct: 857  ASYWGNIMETDGQGGLALRLGFRQIKALREEEVNWITAARGNG-YQTIEDIWRRAGTQP- 914

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
              R L++L  A A    G +R + L     +   +             +FA E       
Sbjct: 915  --RQLQALAEADAFADMGLNRREALWQAKAVTGQS----------PPPLFAGELEGEGIV 962

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                             +   +      HPL + +  L    +    
Sbjct: 963  EDTVHLPTMTLGEEVVEDYVAMRLTLKAHPLALLRNRLTPQPVARAN 1009


>gi|312115146|ref|YP_004012742.1| DNA polymerase III subunit alpha [Rhodomicrobium vannielii ATCC
            17100]
 gi|311220275|gb|ADP71643.1| DNA polymerase III, alpha subunit [Rhodomicrobium vannielii ATCC
            17100]
          Length = 1180

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 252/921 (27%), Positives = 404/921 (43%), Gaps = 48/921 (5%)

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            K   R+ L       +EG I+        I R           + L T      DR+Y+ 
Sbjct: 205  KGECRLTLEDFLAF-SEGQIV-AALPPDDIFRN--PRRMADFRRHLKTLAARLPDRVYLA 260

Query: 186  L-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQK 243
               R RG D  R +++   A    +PLVAT + L+         DVL  + H  T+    
Sbjct: 261  ASHRFRGDDGQRIARLAAFADDLRVPLVATGDVLYHIPARRRLQDVLTCIRHTCTIDEAG 320

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             R     + +LK  +EM  +F+  PEA+ NTV++A RC+F L       P  I    +  
Sbjct: 321  FRLVANAERHLKAPAEMARLFARYPEAVANTVKLAARCTFSLAELTYEYPEEIAPNGE-- 378

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                +  L      GL  R + G            Q++  E  +IAR  ++ +FL V D 
Sbjct: 379  --APQARLERLTWEGLAWRYSDGV------PDTVAQQVRHEFELIARFDYAPFFLTVEDI 430

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+K NI    GRGS A S   YAL IT +DP R +LLFERF++  R   PD D+DF 
Sbjct: 431  VRFARKKNIL-HQGRGSAANSAVCYALGITGVDPARSNLLFERFISDARHEPPDIDVDFE 489

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RR+EVI+Y+ +++G  R     T    + + A+R+VG+AL +       L   +    
Sbjct: 490  HERREEVIQYIYSRFGRHRAGLCATVICYRTRGAVREVGKALGLSPDVTAALSGSVWGWS 549

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               V    +A          +DP +   LE++++L G  RH S H  G +I    L +LV
Sbjct: 550  DGGVDPGDLAS----LGLDASDPRLILCLELTRELIGFPRHLSQHPGGFLIARGRLDELV 605

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIP 602
            P+      D  +  ++   IE  G++K D L L  LT L K  D +     +    + +P
Sbjct: 606  PIENAAMKDRTIVSWDKDDIEALGMLKVDVLALGMLTCLAKGFDLIRAHYGRDLTPATVP 665

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D   Y +L+   ++G+FQ+ES   +  L  ++P    D++  V++ RPGPI   +V+ 
Sbjct: 666  SEDPAVYAMLSRADSIGVFQVESRAQQTMLPRLKPQNFYDLVIEVAIVRPGPIQGDMVHP 725

Query: 663  --NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
               R+ G E+     P +  +L++T GV ++QEQ M+IA + +G+S   AD LRRAM   
Sbjct: 726  YLRRRQGLEEARFPSPELKGILEKTLGVPLFQEQCMRIAIVAAGFSAGRADELRRAMATF 785

Query: 721  IKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
             K   +   K+ FI G       +  A   F  +  F  YGF +SHAA++A++ Y +AWM
Sbjct: 786  KKVGTIGTFKDEFIGGMLARNYPRDFAERCFSQIQGFGTYGFPESHAASFALLVYCSAWM 845

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNR 834
            K HYP  F AA +  +        +  +DAR+  +++    VN    D  +       + 
Sbjct: 846  KCHYPDVFAAAILNSQPMGFYAPAQLVRDAREHGVEVRAADVNASEWDHTLEATDGERHA 905

Query: 835  IYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            +      + G+    AR+I+EA A    F S ED   R    KL    + +L  A A   
Sbjct: 906  LRLGFRLVAGMRVEDARNIVEARAAAGAFRSTEDVMRRA---KLGTAAMLTLARADAFGS 962

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK-ITLEKFSVENSSVRF 952
                R + L  +  +                 +FAHE        +         +    
Sbjct: 963  VARGRRETLWDVAGL-----------EADKLPLFAHETAPSVPPGVPAVALPPLGAGEAV 1011

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              +  V G     HP+   +  L+   +    +      G  + +A +V+ +Q+  T KG
Sbjct: 1012 AEDYSVFGLSLRNHPMAFMRAELQAQRMVRAVDLKTLPNGRFVTIAGLVLFRQRPGTAKG 1071

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
            +   ++T  +         +P
Sbjct: 1072 T--IFMTIEDETGAANLIIWP 1090



 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 18/137 (13%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
              P +  LQ  +++S LEGA   + ++ + A     AIAITD N+L   +     A   
Sbjct: 5   AAPPRYAELQAATNFSFLEGASHPHELVARAAELGLSAIAITDRNSLAGVVRAHLAAREH 64

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           G++ +IGC+L                     P ++   +    Y RL  L++        
Sbjct: 65  GVKLVIGCRLSF---------------VDGAPDLLCYPTDRAAYGRLCRLLTLGKSDRVI 109

Query: 126 KQSVRICLSWLQEIGTE 142
           K   R   S   +  +E
Sbjct: 110 KCEAR---SAAAQAHSE 123


>gi|323525477|ref|YP_004227630.1| DNA polymerase III subunit alpha [Burkholderia sp. CCGE1001]
 gi|323382479|gb|ADX54570.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1001]
          Length = 1191

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 243/1141 (21%), Positives = 436/1141 (38%), Gaps = 165/1141 (14%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA---- 64
            P++  L   +++S L GA   + ++++       A+AITD  +L   +            
Sbjct: 19   PAYAELHCLTNFSFLRGASHPHELVERAMLHSYSALAITDECSLAGVVRAHTALKEMEAE 78

Query: 65   -------------------AG--------------------IQP----IIGCQLDIDMQD 81
                               AG                    ++P    IIG +L++   D
Sbjct: 79   QDRLRKEIEEKLKAAEGSEAGRLPQEALDAALQQEALENWMLKPLPQLIIGSELNLTSAD 138

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE--I 139
                            ++V L +   GY  L EL++      + K S R+  +   +   
Sbjct: 139  G-----------EPFCTLVALATNRNGYGNLSELITLGRSRAE-KGSYRLGPADFTDSLP 186

Query: 140  GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRGYDRYRES 198
              E L  L       + +                     G R ++ L+    G D  +  
Sbjct: 187  HLEHLRSLPDCVLMLVPQRTAT--LSHTLHCAHWLAAFAGTRAWIALELWQTGSDDLQID 244

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
             +  ++    LPLVA    L  +       D + A+  +T +       +  +     R+
Sbjct: 245  ALRMISQASGLPLVAAGGVLMHTRSRKPLQDTMTAIGLNTPLP-ACGHALEANAERHLRT 303

Query: 259  EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
             +        + LE T++IA RC F L       P  +    +       + LR   +AG
Sbjct: 304  RVRLSKLYPRDTLEETLKIAARCRFSLDELKYEYPEELVPAGE----SPSSYLRKLVMAG 359

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
               R   G   K         +++ EL++IA +K+  YFL V D +++A+  NI    GR
Sbjct: 360  AAERWPNGMDLKRI------DQIEKELHLIADLKYEKYFLTVHDIVRFARSKNIL-CQGR 412

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GS A S+  Y L +T+IDP+  ++L ERF++  R   PD D+DF   RR+EVI+Y+  KY
Sbjct: 413  GSAANSIVCYCLHVTEIDPVHMNMLIERFISRARNEPPDIDVDFEHQRREEVIQYIYAKY 472

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G  R A   +  +   ++AL+DVG+AL +  S ++R+ K              + +    
Sbjct: 473  GRHRAALTASLITYHVRSALKDVGKALGLEASLIERISKSQQWWDGPEAVAGYLKE---- 528

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
                        L+ ++++L    RH S H  G VI    LS+LVP+      D  V ++
Sbjct: 529  AGFDANSHITKNLIRLTKELRLFPRHLSQHVGGFVIARDKLSRLVPIENATMKDRSVIEW 588

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE--TYHLLTTKG 616
            +   I+   L+K D L L  L+ ++++L+F+A R       +      +   Y +     
Sbjct: 589  DKDDIDALKLLKVDVLALGMLSAIRRALEFVALRRGFPRFRVQDIPREDRAVYEMCGHAD 648

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSI 674
            T+G+FQ+ES   +  L  ++P+   D++  V++ RPGPI   +V+    RK G E I   
Sbjct: 649  TVGVFQIESRAQQSMLPRLKPNKYYDLVIEVAIVRPGPIQGGMVHPYLRRKQGLEPIDYA 708

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM-DKQKERFI 733
               + P+L+ T GV I+QEQVM +A + + Y+  +AD LRRAM    +     K ++   
Sbjct: 709  KDELRPVLERTLGVPIFQEQVMHLAMVAAKYTGEQADQLRRAMAAWRRTGNLAKYQKDLS 768

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
               S  G        I + +  F +YGF +SHAA++A++ Y +AW+K + P  FLA  + 
Sbjct: 769  DRMSARGYEPEFIERICQQIEGFGEYGFPESHAASFALLVYLSAWLKRYEPAAFLAGLLN 828

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
             +        +  QDA++  ++++PP V     +                         +
Sbjct: 829  SQPLGFYSPSQLVQDAKRHGVKVLPPDVTLSDWESTFEK-------------RDREGERV 875

Query: 854  MEAS----ADKPFDS---LEDF-CSRVDSK----------------------------KL 877
            + +       +   S   L D    R+                               ++
Sbjct: 876  LASETCLHRQQAVVSAQQLRDLSLRRLSVSRTIRRAARRLSARVFQPPGAYGARGPAVRI 935

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN------------ 925
               +++ L  A A       R     ++D++ + A    ++                   
Sbjct: 936  GMHLIKGLAQAAAERIVAARRDAPFSNVDDLARRAALTRRDLEALAAANALASIAGHRRE 995

Query: 926  -------------IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
                         +        +  +        + +    ++   LG  F+ HPL + +
Sbjct: 996  AWWAVTAQHIVPKLLRDAPIAEAPLL----LPQADEAREIIDDYASLGLTFNRHPLALLR 1051

Query: 973  PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              L +   +   +  A   G   R   +V  +Q+  T  G+   +V+  +         +
Sbjct: 1052 ARLARQRFRTAADLAACQHGTLARACGIVTVRQRPGTANGT--IFVSIEDETGSINVIVW 1109

Query: 1033 P 1033
            P
Sbjct: 1110 P 1110


>gi|209559542|ref|YP_002286014.1| DNA polymerase III DnaE [Streptococcus pyogenes NZ131]
 gi|209540743|gb|ACI61319.1| DNA polymerase III alpha subunit [Streptococcus pyogenes NZ131]
          Length = 1036

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 287/1026 (27%), Positives = 498/1026 (48%), Gaps = 102/1026 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVL-------------LNLIAQNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L +   EG+ ++   S G  D                          Y+ +    
Sbjct: 102  LHMDYLCQ-HLEGIAVII-PSKGWSDTLVV------------------PFDYYIGV---- 137

Query: 191  GYDRYRESQVVQL-AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D+Y  + +  + +    +PL       + +++D E   +L A+  + +   +     +
Sbjct: 138  --DQY--TDLSHMDSKRQLIPL---RTVRYFAQDDMETLHMLHAIRDN-LSLAETPVVES 189

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                   +       +  P+AL+N  ++     +    +  +          +  K  + 
Sbjct: 190  DQELTDCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLKLPH-------FNRDKSAKQ 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL+    AGL+ +        G   + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELQELTEAGLKEK--------GLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG +  AQI+TF +  +K A+RDV +   +P  ++  L K I          
Sbjct: 355  FLRYVRNRYGSDHSAQIVTFSTFGSKQAIRDVFKRFGVPEYELTNLTKKIGF---KDSLA 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 412  TVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPL--KS 469

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+    ++D++ I  +D +T
Sbjct: 470  GDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDPQT 529

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ G+
Sbjct: 530  LALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQ 589

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM K 
Sbjct: 590  EKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQKM 649

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 650  EEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 709

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M            +  DA + + Q+   ++N+     K+  ++IY  L  IKG+   
Sbjct: 710  DIMMN------YSSSDYITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRD 763

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E     PF+S+EDF +R   K   +  LE L+  G  DCF  +R ++L +LD +
Sbjct: 764  FAYWIIEQR---PFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNLDGL 820

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +   +         ++F+    ++ D          +++ ++  EQ ++G   S HPL
Sbjct: 821  LVFVNEL--------GSLFSDSSFSWVDA------KDYSATEKYSLEQEIVGVGMSKHPL 866

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   + +      ++ +   +   + S +  +T+  G ++ +++ ++  K+ 
Sbjct: 867  ----IDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKL 922

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 923  DVTLFP 928


>gi|94990613|ref|YP_598713.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS10270]
 gi|94544121|gb|ABF34169.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10270]
          Length = 1036

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 288/1026 (28%), Positives = 498/1026 (48%), Gaps = 102/1026 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVL-------------LNLIAQNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L +   EG+ ++   S G  D                          Y+ +    
Sbjct: 102  LHMDYLCQ-HLEGIAVII-PSKGWSDTLVV------------------PFDYYIGV---- 137

Query: 191  GYDRYRESQVVQL-AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D+Y  + +  + +    +PL       + +++D E   +L A+  + +   +     +
Sbjct: 138  --DQY--TDLSHMDSKRQLIPL---RTVRYFAQDDMETLHMLHAIRDN-LSLAETPVVES 189

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                   +       +  P+AL+N  ++     +    +  +          +  K  + 
Sbjct: 190  DQELTDCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLKLPH-------FNRDKSAKQ 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL+    AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELQELTEAGLKE--------KGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I          
Sbjct: 355  FLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGF---KDSLA 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 412  TVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPL--KS 469

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+    ++D++ I  +D +T
Sbjct: 470  GDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDPQT 529

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ G+
Sbjct: 530  LALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQ 589

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM K 
Sbjct: 590  EKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQKM 649

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 650  EEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 709

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M            +  DA + + Q+   ++N+     K+  ++IY  L  IKG+   
Sbjct: 710  DIMMN------YSSSDYITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRD 763

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E     PF+S+EDF +R+  K   +  LE L+  G  DCF  +R ++L +LD +
Sbjct: 764  FAYWIIEQR---PFNSVEDFLTRIPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNLDGL 820

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +   +         ++F+    ++ D          +++ ++  EQ ++G   S HPL
Sbjct: 821  LVFVNEL--------GSLFSDSSFSWVDA------KDYSATEKYSLEQEIVGVGMSKHPL 866

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   + +      ++ +   +   + S +  +T+  G ++ +++ ++  K+ 
Sbjct: 867  ----IDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKL 922

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 923  DVTLFP 928


>gi|226193729|ref|ZP_03789332.1| error-prone DNA polymerase [Burkholderia pseudomallei Pakistan 9]
 gi|225934307|gb|EEH30291.1| error-prone DNA polymerase [Burkholderia pseudomallei Pakistan 9]
          Length = 928

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 249/892 (27%), Positives = 394/892 (44%), Gaps = 51/892 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129 VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            R+    L         L  +    +  +        + V + +L  F  LFG+R  + L
Sbjct: 124 YRLTPRMLAAPPRALAHLRGVPDCFAILVPTY--PARADVLDAQLAWFDALFGERARLGL 181

Query: 187 -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q  R  D     QV        + +VA  +            D + A+        +  
Sbjct: 182 VQLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMP-IAECG 240

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + P+     R+          +AL  T  +   C F L       P  I         
Sbjct: 241 HALAPNGEQHLRTRQRIAQLFPADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----H 296

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D ++
Sbjct: 297 TPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVK 350

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+  +I    GRGS A SV  Y + +T+++P + +LLFERFL+ +R   PD D+DF   
Sbjct: 351 YARSKDIL-CQGRGSAANSVVCYCIGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQ 409

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K        
Sbjct: 410 RREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGS 469

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              L   A            P +    EI+ +L    RH S H+ G V+    L++LVP+
Sbjct: 470 RDLLARFASV----GLDPEVPLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPV 525

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDL 598
                    V Q++   +E  GL+K D L L  L+ L ++ D +               L
Sbjct: 526 ENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRL 585

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI   
Sbjct: 586 EHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGG 645

Query: 659 VVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            V+   +  +        +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD
Sbjct: 646 AVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEAD 705

Query: 712 VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            LRRAM     K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A
Sbjct: 706 ALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFA 765

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  +
Sbjct: 766 KLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASL 825

Query: 831 G----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
                         +   L+ ++G+G   AR I  A A  PF S+++   R 
Sbjct: 826 EAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRA 877


>gi|262282918|ref|ZP_06060685.1| DNA-directed DNA polymerase subunit III alpha [Streptococcus sp.
            2_1_36FAA]
 gi|262261170|gb|EEY79869.1| DNA-directed DNA polymerase subunit III alpha [Streptococcus sp.
            2_1_36FAA]
          Length = 1033

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 289/1023 (28%), Positives = 481/1023 (47%), Gaps = 101/1023 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS ++  +S+   ++K        + I D +NL+ A  F ++   AGIQ ++
Sbjct: 3    AQLDTKTVYSFMDSLVSIKKYVEKAKEFGYSHLGIMDMDNLYGAYHFLEETKVAGIQGLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  L++                    S+ LL   ++GY+ L+++ + + L  +       
Sbjct: 63   GLDLNL-------------VKDGQPLSLRLLAINSQGYRNLMKVSTLIMLDKKE------ 103

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S + +   +GL ++     G  D                      G   Y+ +     
Sbjct: 104  -WSDI-QHLMQGLALIVPAYPGIDDLDL-------------------GKDYYIGVSPTTP 142

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                    +   +     P +      +    D E   +L A+  +  +  ++   +   
Sbjct: 143  --------LQDFSR----PTLPLYTVRYFDTGDLETLQMLRAIRENVSL--REVGDLPSG 188

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +     ++   F          +E   +           LPR       + ++    EL
Sbjct: 189  QHFLRPEQLRDAFEKTFPESLENLERLVQDVHYDIDTELKLPR------FNPERPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R ++ AGL+ R        G  +  Y++RL+ EL VI +M F  YFLIV D +++ +   
Sbjct: 243  RERSEAGLKKR--------GLTSSLYQERLNQELAVIHQMGFDDYFLIVWDLLRFGRSQG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E I
Sbjct: 295  YYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPEFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG    AQI+T+ +  AK A+RDV +   +   ++  + K I    +      A
Sbjct: 355  RYVRDRYGTLHAAQIVTYSTFGAKQAIRDVFKRFGVAEYELTNITKKIRFGDS---LSTA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  FR+   +     +  +I++K+EG  R  S HAAG+V+ D  L+  +P+      
Sbjct: 412  YEKNIAFRQIINSKLEYQKAFDIAKKIEGNPRQTSVHAAGVVMSDNDLTDQIPLKYG--E 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +    +  + + +  I  +D +T  
Sbjct: 470  DMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEAVQKKYEIDIQIESIDLEDKKTLQ 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E  G    L+ +QP C E+++A  SL RPG  D I  +  RK+G+E 
Sbjct: 530  LFAAGDTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRPGASDYIDNFVKRKHGREA 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +VSI   +D +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM K +E
Sbjct: 590  VVSIDESLDDILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNALEMHKMEE 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+SGA K G S+  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F   
Sbjct: 650  EFVSGAMKLGHSEKKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPEVFFDV 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA  F  ++ P ++NT     K  +N+I+  L  IKG+    A
Sbjct: 710  LLN------YSSSDYITDALSFGFKLAPLTINTVPYHDKFEENQIFLGLKNIKGLPRDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E     PF  +EDF  R+ S+      L  LV  G  D F  +R +++ +L N+  
Sbjct: 764  YWIIEER---PFTGIEDFLLRLPSQYRKESSLIPLVQIGLFDSFEPNRQKIISNLSNLFI 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++FA    ++++          + + +FE EQ +LG   S HPL  
Sbjct: 821  FVEEL--------GSLFADSSYSWTEA------EDYSQAEKFELEQSILGVGLSDHPLM- 865

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                + K   + +         +  ++ A V S +  +T+ G  + ++  ++  K+ +  
Sbjct: 866  ---TIAKATTESFSWIGDLAENSRAKILAQVQSIKVIRTKNGENMAFLQVTDTKKKLDVT 922

Query: 1031 FFP 1033
             FP
Sbjct: 923  LFP 925


>gi|296162446|ref|ZP_06845237.1| DNA polymerase III, alpha subunit [Burkholderia sp. Ch1-1]
 gi|295887259|gb|EFG67086.1| DNA polymerase III, alpha subunit [Burkholderia sp. Ch1-1]
          Length = 1195

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 252/1143 (22%), Positives = 437/1143 (38%), Gaps = 159/1143 (13%)

Query: 6    EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK---- 61
               P++  L   +++S L GA     ++++  +    A+AITD  +L   +         
Sbjct: 16   THLPAYAELHCLTNFSFLRGASHPYELVEQAMSRGYSALAITDECSLAGVVRAHTALKEM 75

Query: 62   -----------------------------ACAAG--------------IQP----IIGCQ 74
                                         A   G              ++P    IIG +
Sbjct: 76   REERERQQKEREDKAKAAKAEQAAAPLEDASKTGAIQQEAEEIEDAESLKPLPHLIIGSE 135

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            L++  +                 ++V L +   GY  L EL++        K S R+  S
Sbjct: 136  LNLTDETG-----------EPFCTLVALATNRNGYGNLSELITLARSRAD-KGSYRLGPS 183

Query: 135  WLQE--IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RHRG 191
               +       L  L       + +           +           R ++ L+    G
Sbjct: 184  DFTDSLPHLAHLQTLPDCVLMLVPQRAAT--LSHTLRCAHWLASFAAQRAWIALELWQTG 241

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D  +   +  ++    LPLVA    L  +       D + A+             +  +
Sbjct: 242  SDDLQIDALRMISKASGLPLVAAGGVLMHARSRKPLQDTMTAIGL-VTPLSACGHALEAN 300

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
                 R+ +        + LE T+ IA  C F L       P  +    +       + L
Sbjct: 301  AERHMRTRVRLGKLYPRDTLEETLRIAALCRFSLDELKYEYPEELVPVGE----SPSSYL 356

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R   +AG   R  +G   K         +++ EL +IA +K+  YFL V D + +A+  N
Sbjct: 357  RKLVMAGAMERWPEGMDLKRIG------QIEKELALIADLKYEKYFLTVHDIVSFARSRN 410

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I    GRGS A S+  Y L +T+IDP+  ++L ERF++  R   PD D+DF   RR+EVI
Sbjct: 411  IL-CQGRGSAANSIVCYCLHVTEIDPVNMNMLIERFISRARNEPPDIDVDFEHQRREEVI 469

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +Y+  KYG  R A   +  +  A++AL+DVG+AL +  S ++R+ K              
Sbjct: 470  QYIYTKYGRHRAALTASLITYHARSALKDVGKALGLEASLIERISKSQQWWDGTDAVAGY 529

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
            +A+                L+ ++ +L    RH S H  G VI    LS+LVP+      
Sbjct: 530  LAE----AGFDANSHITQNLIRLTGELRSFPRHLSQHVGGFVIAKDKLSRLVPIENATMK 585

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE--TY 609
            D  V +++   I+   L+K D L L  L+ ++++L+F+A R       +      +   Y
Sbjct: 586  DRSVIEWDKDDIDALKLLKVDVLALGMLSAIRRALEFVALRRGFPKFRVQDIPREDRAVY 645

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNG 667
             +     T+G+FQ+ES   +  L  ++P+   D++  V++ RPGPI   +V+    RK G
Sbjct: 646  EMCGHADTIGVFQIESRAQQSMLPRLKPNKYYDLVIEVAIVRPGPIQGGMVHPYLRRKQG 705

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM-D 726
             E +      + P+L+ T GV I+QEQVM +A + + YS  +AD LRRAM    +     
Sbjct: 706  LEPVDYAKDELRPVLERTLGVPIFQEQVMHLAMVAAEYSGEQADQLRRAMAAWRRSGNLA 765

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K ++       K G  +     I + +  F +YGF +SHAA++A++ Y +AW+K + P  
Sbjct: 766  KYQKDLNKRMLKRGYEQEFIDRICKQIEGFGEYGFPESHAASFALLVYLSAWLKRYEPAA 825

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-----VGDNRIYYS--- 838
            FLA  +  +        +  QDA++  ++++PP V     +           RI      
Sbjct: 826  FLAGLLNSQPLGFYSPSQLVQDAKRHGVKVLPPDVTLSDWESTFERRGHEGRRISSGETC 885

Query: 839  -------LAA--IKGVG----------TTTARHIMEAS--------ADKPFDSLEDFCSR 871
                   L+A  ++ +              A+ +            A  P         R
Sbjct: 886  LHRQQTVLSAQQLRDLSLRRLTVSRTVRRAAQRLTARVFQPSDTYGARGP-------AVR 938

Query: 872  VD---SKKLNRRVLESL--VFAGA-L-DCFGYSRMQLLQ--------------SLDNIQK 910
            +     K L + V E +      A   D    +R   L               S+   ++
Sbjct: 939  IGMHLIKGLAQGVAERIMAARNDAQFTDVDDLARRAALTRRDLEALAAANALVSIAGHRR 998

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
             A W    +      +   +       + L + +    S    ++   LG   + HPL +
Sbjct: 999  EAWWAVTAQHTVPRLL--RDAPIAEAPLALPQAAE---SREIVDDYASLGLTLNRHPLAL 1053

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +  L +   +   E  A   G   R   +V  +Q+  T  G+   +V+  +        
Sbjct: 1054 LRARLARQRFRSAAELAACQHGTLARACGIVTVRQRPGTANGT--VFVSIEDETGSINVI 1111

Query: 1031 FFP 1033
             +P
Sbjct: 1112 VWP 1114


>gi|84502808|ref|ZP_01000921.1| DNA polymerase III, alpha subunit [Oceanicola batsensis HTCC2597]
 gi|84388791|gb|EAQ01661.1| DNA polymerase III, alpha subunit [Oceanicola batsensis HTCC2597]
          Length = 975

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 235/995 (23%), Positives = 405/995 (40%), Gaps = 70/995 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA------ 64
           F  +   S+++ L GA      + +       A+AI D N++   +   QKA        
Sbjct: 2   FSEISATSNFTFLTGASHPEEYMARAEQLGLEAVAIADENSVAGIVRAHQKAREIARAIR 61

Query: 65  --------AG----IQPIIGCQLDIDMQDN-LKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
                    G    ++P  G    +  +    ++    +        I  L  T  G+ R
Sbjct: 62  DREAWEATHGPMGPLKP--G---HVPPRPKAPRLIPAARLVLSDGMEITALPETRIGWAR 116

Query: 112 LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL-IMLTGGSSGPIDRAFFFNSSQVAEKR 170
           L  L+SR  L    K    + +  L + G E L ++L    +    R      +    KR
Sbjct: 117 LCRLISRGRLR-APKGDCLLHIEDLLDNGMEALRLVLHPSRAITDPR-----GAGDWPKR 170

Query: 171 LLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                + FG ++ + L   + G D+ R      +A    +  V +   +          D
Sbjct: 171 ARRLTRRFGGQMSLALTPAYDGQDKARFDTHAAMAADLGIETVTSARPMMHHARRRRLAD 230

Query: 230 VLMAVAHSTVVSQKDRP-RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
           V+ A+  S  V    R      +  L+  +E+  +      A++ T+ +AR  +F L   
Sbjct: 231 VMTAIRTSRTVDALGRDALANGERRLRTGTELRRMLGPHAGAVDRTIRLARSLTFSLDE- 289

Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                R+         +     L   A  GL  R   GA          +  L+ EL +I
Sbjct: 290 ----LRYEYPSEVSGGETPSTRLARLARKGLAWRYPFGA------PDRVKAMLEHELALI 339

Query: 349 ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFL 408
           A++K+  YFL V D + +A+  +I    GRGS A SV  Y L +T + P   +++FERF+
Sbjct: 340 AKLKYEPYFLTVHDVVAFARSRDIL-CQGRGSAANSVVCYCLGVTSVSPEIGTMVFERFV 398

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
           +  R   PD D+DF  +RR+EVI+++  +YG  R     T    + K A+R+VG A+ + 
Sbjct: 399 SEARDEPPDIDVDFEHERREEVIQHIYERYGRHRAGLCATVIHYRGKRAIREVGAAMGLT 458

Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
              +  L   +    A          +               L+   + +    RH S H
Sbjct: 459 QDTIGALSSQLWGFFAAAGMEDQRMREIGLDPTDPRLRQTMALIHEIEGM---PRHLSQH 515

Query: 529 AAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD- 587
             G ++ +  L +LVP+      D  V  ++   I+  G++K D L L  LT ++K+ D 
Sbjct: 516 VGGFIMTEGRLDELVPIENATMEDRTVICWDKDDIDTLGILKVDVLALGMLTCIRKAFDL 575

Query: 588 FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            +     ++DL+ IP +D E Y +L    T+G+FQ+ES      L  M+P C  D++  V
Sbjct: 576 LVRHENTELDLATIPPEDPEVYDMLCKADTIGVFQVESRAQMNFLPRMRPRCFYDLVIEV 635

Query: 648 SLYRPGPIDNIVVYNNRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
           ++ RPGPI   +V+   +    +  +      +  +L +T GV ++QEQ MQIA + +G+
Sbjct: 636 AIIRPGPIQGDMVHPYIRRRNGEETVEFPSDELGQVLGKTLGVPLFQEQAMQIAIIGAGF 695

Query: 706 SLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
           +  EAD LRR++    K   + + + RF+ G ++NG     A   F  +  F  YGF +S
Sbjct: 696 TPEEADRLRRSLATFKKHGNVSEFRSRFMRGMARNGYDADFADRCFSQIEGFGSYGFPES 755

Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
           HAA++A++ Y ++W+K H+P  F  A +  +        +  +DAR   +++ P  +N  
Sbjct: 756 HAASFALLVYASSWIKHHHPGIFACALLNSQPMGFYAPAQIVRDARDHGVEVRPVDINAS 815

Query: 825 CVDFKVGDNR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
             D  +        +      IKGVG   A  I  A  +  + S+ D   R     +   
Sbjct: 816 HWDNIMEREGARLILRLGFRQIKGVGQEEADWISAARGNG-YHSVGDVWRRA---GVAPA 871

Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
           ++E L  A A    G  R + +     +          R  K   +F  +          
Sbjct: 872 LIERLAEADAFASLGLDRREAIWEAKAL----------RPGKPLPLFEGDMDGEGITEPA 921

Query: 941 EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
                         +   +      HP+   + +L
Sbjct: 922 ALLPEMTPGEAVVEDFVAMRLSLKAHPVAFLREVL 956


>gi|306827247|ref|ZP_07460534.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus pyogenes
            ATCC 10782]
 gi|304430394|gb|EFM33416.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus pyogenes
            ATCC 10782]
          Length = 1036

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 288/1026 (28%), Positives = 497/1026 (48%), Gaps = 102/1026 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVL-------------LNLIAQNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L +   EG+ ++   S G  D                          Y+ +    
Sbjct: 102  LHMDYLCQ-HLEGIAVII-PSKGWSDTLVV------------------PFDYYIGV---- 137

Query: 191  GYDRYRESQVVQL-AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D+Y  + +  + +    +PL       + +++D E   +L A+  + +   +     +
Sbjct: 138  --DQY--TDLSHMDSKRQLIPL---RTVRYFAQDDMETLHMLHAIRDN-LSLAETPVVES 189

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                   +       +  P+AL+N  ++     +    +  +          +  K  + 
Sbjct: 190  DQELTDCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLKLPH-------FNRDKSAKQ 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL+    AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELQELTEAGLKE--------KGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I          
Sbjct: 355  FLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGF---KDSLA 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 412  TVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPL--KS 469

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+    ++D++ I  +D +T
Sbjct: 470  GDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDPQT 529

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ G+
Sbjct: 530  LALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQ 589

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM K 
Sbjct: 590  EKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQKM 649

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 650  EEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 709

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M            +  DA + + Q+   ++N+     K+  ++IY  L  IKG+   
Sbjct: 710  DIMMN------YSSSDYITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRD 763

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E     PF+S+EDF +R   K   +  LE L+  G  DCF  +R ++L +LD +
Sbjct: 764  FAYWIIEQR---PFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNLDGL 820

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +   +         ++F+    ++ D          +++ ++  EQ ++G   S HPL
Sbjct: 821  LVFVNEL--------GSLFSDSSFSWVDA------KDYSATEKYSLEQEIVGVGMSKHPL 866

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   + +      ++ +   +   + S +  +T+  G ++ +++ ++  K+ 
Sbjct: 867  ----IDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKL 922

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 923  DVTLFP 928


>gi|167822588|ref|ZP_02454059.1| error-prone DNA polymerase [Burkholderia pseudomallei 9]
          Length = 882

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 249/892 (27%), Positives = 394/892 (44%), Gaps = 51/892 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129 VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            R+    L         L  +    +  +        + V + +L  F  LFG+R  + L
Sbjct: 124 YRLTPRMLAAPPRALAHLRGVPDCFAILVPTY--PARADVLDAQLAWFDALFGERARLGL 181

Query: 187 -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q  R  D     QV        + +VA  +            D + A+        +  
Sbjct: 182 VQLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMP-IAECG 240

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + P+     R+          +AL  T  +   C F L       P  I         
Sbjct: 241 HALAPNGEQHLRTRQRIAQLFPADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----H 296

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D ++
Sbjct: 297 TPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVK 350

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+  +I    GRGS A SV  Y + +T+++P + +LLFERFL+ +R   PD D+DF   
Sbjct: 351 YARSKDIL-CQGRGSAANSVVCYCIGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQ 409

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K        
Sbjct: 410 RREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGS 469

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              L   A            P +    EI+ +L    RH S H+ G V+    L++LVP+
Sbjct: 470 RDLLARFASV----GLDPEVPLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPV 525

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDL 598
                    V Q++   +E  GL+K D L L  L+ L ++ D +               L
Sbjct: 526 ENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRL 585

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI   
Sbjct: 586 EHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGG 645

Query: 659 VVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            V+   +  +        +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD
Sbjct: 646 AVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEAD 705

Query: 712 VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            LRRAM     K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A
Sbjct: 706 ALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFA 765

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  +
Sbjct: 766 KLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASL 825

Query: 831 G----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
                         +   L+ ++G+G   AR I  A A  PF S+++   R 
Sbjct: 826 EAQPGAAPPDGRPAVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRA 877


>gi|21910450|ref|NP_664718.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS315]
 gi|28896025|ref|NP_802375.1| DNA polymerase III DnaE [Streptococcus pyogenes SSI-1]
 gi|25452930|sp|Q8K7A1|DPO3A_STRP3 RecName: Full=DNA polymerase III subunit alpha
 gi|21904649|gb|AAM79521.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes
            MGAS315]
 gi|28811275|dbj|BAC64208.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes
            SSI-1]
          Length = 1036

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 289/1026 (28%), Positives = 497/1026 (48%), Gaps = 102/1026 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVL-------------LNLIAQNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L +   EG+ ++   S G  D                          Y+ +    
Sbjct: 102  LHMDYLCQ-HLEGIAVII-PSKGWSDTLVV------------------PFDYYIGV---- 137

Query: 191  GYDRYRESQVVQL-AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D+Y  + +  + +    +PL       + +++D E   +L A+  + +   +     +
Sbjct: 138  --DQY--TDLSHMDSKRQLIPL---RTVRYFAQDDMETLHMLHAIRDN-LSLAETPVVES 189

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                   +       +  P+AL+N  ++     +    +  +          +  K  + 
Sbjct: 190  DQELTDCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLKLPH-------FNRDKSAKQ 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL+    AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELQELTEAGLKE--------KGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I          
Sbjct: 355  FLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGF---KDSLA 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 412  TVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPL--KS 469

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              D+ +TQ++   IE  GL+K DFLGL+ LT +QK  + +A+    ++D++ I  +D +T
Sbjct: 470  GDDMMITQYDAHAIEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDPQT 529

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ G+
Sbjct: 530  LALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQ 589

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM K 
Sbjct: 590  EKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQIYAGFTLGKADLLRRAMSKKNLQEMQKM 649

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 650  EEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 709

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M            +  DA + + Q+   ++N+     K+  ++IY  L  IKG+   
Sbjct: 710  DIMMN------YSSSDYITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRD 763

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E     PF+S+EDF +R   K   +  LE L+  G  DCF  +R ++L +LD +
Sbjct: 764  FAYWIIEQR---PFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNLDGL 820

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +   +         ++F+    ++ D          +++ ++  EQ ++G   S HPL
Sbjct: 821  LVFVNEL--------GSLFSDSSFSWVDA------KDYSATEKYSLEQEIVGVGMSKHPL 866

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   + +      ++ +   +   + S +  +T+  G ++ +++ ++  K+ 
Sbjct: 867  ----IDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKL 922

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 923  DVTLFP 928


>gi|270292875|ref|ZP_06199086.1| DNA polymerase III, alpha subunit [Streptococcus sp. M143]
 gi|270278854|gb|EFA24700.1| DNA polymerase III, alpha subunit [Streptococcus sp. M143]
          Length = 1033

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 290/1022 (28%), Positives = 473/1022 (46%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +AI D +NL+ A  F +     GIQP+I
Sbjct: 3    AQLDTKTVYSFMESVVSIEKYVQTAKEYGYSHLAIMDVDNLYGAYHFLEVTRKQGIQPLI 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + +                    L  + +GYQ L++L +        K + R 
Sbjct: 63   GLEMTLIIDEKALSFR-------------FLALSTKGYQELMKLSTL-------KMTGRK 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S       E + ++     G I++                     G   ++ +     
Sbjct: 103  NWSDFTS-HLEDVAVIVPYFEG-IEQLDL------------------GHDYFIGISPDTP 142

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             + +              P++         +ED +   +L A+  +  + + D       
Sbjct: 143  QEVFTR------------PILPLYQVNSFEKEDIQVLQILSAIKDNVSLREVDLHSQ-QG 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +L          +  P+AL            +++     L   ++    + ++    EL
Sbjct: 190  IFLPASDLEARFKNHFPQAL-------ANLQGLIENVDYQLDPSLKLPRFNPERPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G           KG  +  Y +RL+ EL VI  M F  YFL+V D +++ +   
Sbjct: 243  RERAEQG--------LSDKGLTSAIYHERLNEELAVIHDMGFDDYFLVVWDLLRFGRSQG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AY+L IT IDP+  +L+FERFLN +R +MPD DID     R E I
Sbjct: 295  YYMGMGRGSAVGSLVAYSLDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDLYRPEFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG + VAQI+T+ +  AK A+RDV +   +P  ++  + K I           A
Sbjct: 355  RYVRDRYGSQHVAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITKKISF---RDTLTTA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI++K+EG  R  S HAAG+V+ D+ L+  +P+      
Sbjct: 412  YEKNLQFRQLINSKIEYQKAFEIARKIEGYPRQTSIHAAGVVMSDQDLTDYIPLKYG--E 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + LA+       +  I  +D  T  
Sbjct: 470  DMLITQYDAHGVEANGLLKMDFLGLRNLTFVQKMQELLAESEGVHLKIEEIDLEDKATLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L +   T GIFQ E  G  + L+ +QP   E+++A  SL RPG  D I  +  RK+GKEK
Sbjct: 530  LFSAGNTKGIFQFEQPGAIRLLKRVQPQVFEEVVATTSLNRPGASDYIDNFVARKHGKEK 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK  +EM   KE
Sbjct: 590  VTVLDPALEDILSSTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAKEMHLMKE 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FISGA K G S+  A   F ++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  DFISGAMKLGHSEEKANQFFAVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFFQV 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +           ++  DA Q   Q+ P ++N+     K+   +IY  L AIKG+    +
Sbjct: 710  MLN------YSSSEYIVDALQMGFQVAPLAINSIPYHDKIAQKKIYLGLKAIKGMPRDFS 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++PF S+EDF +R+        +L  LV  G  D F  +R ++L +L N+  
Sbjct: 764  YWIIE---NRPFSSVEDFVTRLPKNYKKLSLLTPLVELGLFDEFDKNRQKILVNLPNLFV 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +          +FA    ++++            + +F  EQ ++G   S HPL  
Sbjct: 821  FVEEL--------GGLFADTNYSWTEA------DDFTEAEKFYKEQELIGVGISPHPLQ- 865

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                L K  +           G    L   +   +  +T+KG  + ++   +     +  
Sbjct: 866  ---TLAKQALYPTTPITNLTEGAQATLLVELQKIKVIRTKKGESMAFLQVHDSKSRMDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  VF 924


>gi|329116894|ref|ZP_08245611.1| DNA polymerase III, alpha subunit [Streptococcus parauberis NCFD
            2020]
 gi|326907299|gb|EGE54213.1| DNA polymerase III, alpha subunit [Streptococcus parauberis NCFD
            2020]
          Length = 1034

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 288/1025 (28%), Positives = 477/1025 (46%), Gaps = 102/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L +   +        I I D +NL++A  F       G+QPI
Sbjct: 2    FAQLDTKTVYSFMDSLVDLEHYFTEAKKLGYKTIGIMDKDNLYAAYHFITGCQKHGLQPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++D   QDNL               + L+    +GY+ L+++ +   +  +     +
Sbjct: 62   LGLEIDYPSQDNLMT-------------LFLIAQNNQGYKNLLKIST-SKMSGEFN---Q 104

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L   +    +GL+ +                    +   L  K  FG  +Y       
Sbjct: 105  IDLEHFK----DGLVAIIP-------------DQANLQAIDLPLKTYFG--VY------- 138

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D              + PL+A     + S+ D E+   L A+  +  +++     V  
Sbjct: 139  -PDTRSNP--------TDNPLIALRKVRYFSDNDRESLQTLHAIRDNVNLTETS--LVEQ 187

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              +L +   +   F          +E               LPRF  +         +++
Sbjct: 188  GQFLDSVETVTDFFKVQFPDALKNLENLTSTISYHFDSQLKLPRFNREIP------AKDQ 241

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     GL+ +             DY+ RL+ EL +I+ M F  YFLIV D +++ +  
Sbjct: 242  LRQLTEEGLKKK--------NLWLPDYQVRLEKELQIISEMGFDDYFLIVWDLLRFGRSK 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ AY+L IT IDP++  LLFERFLN +R SMPD DID     R E 
Sbjct: 294  GYYMGMGRGSAAGSLVAYSLEITGIDPIKNDLLFERFLNKERYSMPDIDIDLPDIYRSEF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV+N+YG +  AQI+TF +   K A+RDV +   +P  +   L  L            
Sbjct: 354  LHYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYE---LSHLTKKIGFKDTLDS 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+   +     R  EI++++EG  R  S HAAGIV+ D  L+  +P+     
Sbjct: 411  VYEKNISFRQFVNSRLEYQRAFEIAKRIEGNPRQTSIHAAGIVMSDDNLTDHIPLKLG-- 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFLAQRGVKVDLSLIPFDDHETY 609
             D+ +TQ++   +E  GL+K DFLGL+ LT +QK        +G+ + ++ I  +D +T 
Sbjct: 469  DDMMITQYDAVAVEANGLLKMDFLGLRNLTFVQKMKEKLFKDQGIDISIADINLEDSDTL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+NG+E
Sbjct: 529  ALFARGDTKGIFQFEQNGAISLLKRIKPVRFEEIVATTSLNRPGASDYTNNFIKRRNGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             +  I P+I P+L+ T G+++YQEQVMQIAQ+ +G+SL +AD+LRRAM KK   EM K +
Sbjct: 589  VVDLIDPVIAPILESTYGIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSKKNSAEMKKLE 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              F++GA++ G S   A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F  
Sbjct: 649  SEFLAGAAQLGRSLETAKLLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPGIFFD 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              M            +  DA   + +++P S+N      KV  N I   +  IKG+    
Sbjct: 709  VIMNYSNS------DYISDALDSDFKVIPLSINNIPYTDKVEKNTILMGMKNIKGLPRDF 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E   ++PF  +E F +R+  K   +  L  L+  G  D F  +R +++++ + + 
Sbjct: 763  AYWIIE---NRPFSGIESFMTRIPEKYKKKEALIPLIQIGLFDQFEPNRKKVIENCEALL 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             +   +         ++FA    ++ D          ++S +++ EQ ++G   S HPL 
Sbjct: 820  VFVNEL--------GSLFADSSFSWVDA------DDYSNSEKYQLEQEIIGVGLSKHPLL 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYE 1028
                   +       + V         +   + S +  +T+  G ++ +++ ++  K+++
Sbjct: 866  ALAEK-TRKQFTPITKLVKDTD---AEILVQIDSIRIIRTKSNGQQMAFLSVTDTKKKFD 921

Query: 1029 ANFFP 1033
               FP
Sbjct: 922  VTIFP 926


>gi|94994536|ref|YP_602634.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS10750]
 gi|94548044|gb|ABF38090.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10750]
          Length = 1036

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 288/1026 (28%), Positives = 498/1026 (48%), Gaps = 102/1026 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVL-------------LNLIAQNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L +   EG+ ++   S G  D                          Y+ +    
Sbjct: 102  LHMDYLCQ-HLEGIAVII-PSKGWSDTLVV------------------PFDYYIGV---- 137

Query: 191  GYDRYRESQVVQL-AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D+Y  + +  + +    +PL       + +++D E   +L A+  + +   +     +
Sbjct: 138  --DQY--TDLSHMDSKRQLIPL---RTVRYFAQDDMETLHMLHAIRDN-LSLAETPVVES 189

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                   +       +  P+AL+N  ++     +    +  +          +  K  + 
Sbjct: 190  DQELADCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLKLPH-------FNRDKSAKQ 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL++   AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELQDLTEAGLKE--------KGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I          
Sbjct: 355  FLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGF---KDSLA 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 412  TVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHMPL--KS 469

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+    ++D++ I  +D +T
Sbjct: 470  GDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDPQT 529

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ G+
Sbjct: 530  LALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQ 589

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM K 
Sbjct: 590  EKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQKM 649

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 650  EEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 709

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M            +  DA + + Q+   ++N+     K+  ++IY  L  IKG+   
Sbjct: 710  DIMMN------YSSSDYITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRD 763

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E     PF+S+EDF +R   K   +  LE L+  G  DCF  +R ++L +LD +
Sbjct: 764  FAYWIIEQR---PFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNLDGL 820

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +   +         ++F+    ++ D          +++ ++  EQ ++G   S HPL
Sbjct: 821  LVFVNEL--------GSLFSDSSFSWVDA------KDYSATEKYSLEQEIVGVGMSKHPL 866

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   + +      ++ +   +   + S +  +T+  G ++ +++ ++  K+ 
Sbjct: 867  ----IDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKL 922

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 923  DVTLFP 928


>gi|71903627|ref|YP_280430.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS6180]
 gi|71802722|gb|AAX72075.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS6180]
          Length = 1036

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 287/1026 (27%), Positives = 498/1026 (48%), Gaps = 102/1026 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVL-------------LNLIAQNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L +   EG+ ++   S G  D                          Y+ +    
Sbjct: 102  LHMDYLCQ-HLEGIAVII-PSKGWSDTLVV------------------PFDYYIGV---- 137

Query: 191  GYDRYRESQVVQL-AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D+Y  + +  + +    +PL       + +++D E   +L A+  + +   +     +
Sbjct: 138  --DQY--TDLSHMDSKRQLIPL---RTVRYFAQDDMETLHMLHAIRDN-LSLAETPVVES 189

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                   +       +  P+AL+N  ++     +    +  +          +  K  + 
Sbjct: 190  DQELADCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLKLPH-------FNRDKSAKQ 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL++   AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELQDLTEAGLKE--------KGLWKEPYQSRLLRELVIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I          
Sbjct: 355  FLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGF---KDSLA 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 412  TVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPL--KS 469

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+    ++D++ I  +D +T
Sbjct: 470  GDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDPQT 529

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ G+
Sbjct: 530  LALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQ 589

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM K 
Sbjct: 590  EKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQIYAGFTLGKADLLRRAMSKKNLQEMQKM 649

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 650  EEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 709

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M            +  DA + + Q+   ++N+     K+  ++IY  L  IKG+   
Sbjct: 710  DIMMN------YSSSNYITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRD 763

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E     PF+S+EDF +R   K   +  LE L+  G  DCF  +R +++ +LD +
Sbjct: 764  FAYWIVEQR---PFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKIMDNLDGL 820

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +   +         ++F+    ++ D          +++ ++  EQ ++G   S HPL
Sbjct: 821  LVFVNEL--------GSLFSDSSFSWVDT------KDYSATEKYSLEQEIVGVGMSKHPL 866

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   + +      ++ +   +   + S +  +T+  G ++ +++ ++  K+ 
Sbjct: 867  ----IDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKL 922

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 923  DVTLFP 928


>gi|288905189|ref|YP_003430411.1| DNA polymerase III, subunit alpha [Streptococcus gallolyticus UCN34]
 gi|288731915|emb|CBI13480.1| DNA polymerase III, subunit alpha [Streptococcus gallolyticus UCN34]
          Length = 1035

 Score =  460 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 285/1025 (27%), Positives = 479/1025 (46%), Gaps = 101/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   +    +     I I D +NL++A  F ++A    +QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLEGYVKAAKSLGYQTIGIMDKDNLYAAFHFIEEAKKQSLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L   +++ L +             + LL     GY+ L+++ S+    D       
Sbjct: 62   VGLELSFAVEETLSLK------------LYLLAQDTTGYKNLMKISSKQMSSD------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L  L +        LTG        A      +  E   L F        Y+ +  + 
Sbjct: 103  IQLDELSDY-------LTG-------VAIVVPYFEELETLSLPF------DYYIGVDVNS 142

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                            +E P+       +    + E   +L A+  +  +          
Sbjct: 143  PQ------------KAYEKPIFPLYTVRYFETNEVETLHMLHAIRDNISLKDAPPASQGQ 190

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            +    +     +     P+ALEN  ++     +       +          + QK  + E
Sbjct: 191  NLLACDI-LTQAFRETFPKALENQEKLVSNIHYEFDTDLKLPR-------FNRQKPAQEE 242

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L  +  AGL         AK      Y++RL  EL+VI +M F  YFLIV D +++ +  
Sbjct: 243  LIERTEAGLR--------AKNLWLPAYQERLKKELSVIHKMGFDDYFLIVWDLLRFGRSR 294

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ +YAL IT IDP++ +LLFERFLN +R SMPD DID     R E 
Sbjct: 295  GYYMGMGRGSAAGSLVSYALDITGIDPVKNNLLFERFLNEERYSMPDIDIDLPDVYRSEF 354

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV+N+YG    AQI+TF +  AK A+RDV +    P  ++  + K I           
Sbjct: 355  LHYVRNRYGSLHSAQIVTFSTFGAKQAIRDVFKRFGAPEHELTNITKKISF---RDTLTS 411

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+   +     +   I++++EG  R  S HAAG+V+ D  L++ +P+     
Sbjct: 412  VYEKNLSFRQIINSKIEYQKAFAIAKRIEGNPRQTSIHAAGVVMSDDNLTEHIPL--KAG 469

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             D+ +TQ++ + +E  GL+K DFLGL+ LT +Q+  + +A+   V +D+  I  +D +T 
Sbjct: 470  EDMMITQYDAQAVEANGLLKMDFLGLRNLTFVQRMQEKVAKDYGVTIDIKSIDLEDKKTL 529

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E +G    L+ +QP   EDI+A  SL RPG  D    +  R+ G+E
Sbjct: 530  ELFAAGKTKGIFQFEQAGAINLLKRIQPRQFEDIVATTSLNRPGASDYTENFIKRRFGQE 589

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  I PL+ P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  ++M K +
Sbjct: 590  EVDLIDPLVAPILEPTYGIMLYQEQVMQIAQIYAGFTLGKADLLRRAMSKKKADDMQKME 649

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              F+ G+ + G     A ++F  +AKFA YGFN+SHA AY+ +++Q A+ K HYP  F  
Sbjct: 650  SDFLEGSQRLGRPLETAKDLFSRMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFYD 709

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +            +  DA     ++    +NT     K+ D +IY  L  ++GV    
Sbjct: 710  VMLN------YSSADYITDALDSQFKVKKIDINTVPYSDKISDGQIYLGLKNLRGVPRDL 763

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               I+E   ++PF S EDF +R+      R ++  LV  GA D F  +R +++++LD + 
Sbjct: 764  CYWIIE---NRPFSSAEDFLTRLPENYQKREMITPLVEVGAFDQFDKNRRKIIENLDPLL 820

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             +   +         ++FA    ++ +           ++ ++  EQ +LG   S HPL 
Sbjct: 821  IFVNEL--------GSLFADTSYSWIET------EDYPNAEKYRLEQSLLGVGISPHPLL 866

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYE 1028
                 + +   K +             +   +   +  +T+ KG ++ +++ ++  K+++
Sbjct: 867  ----EIARQSTKDFTALADLQENTEATILVELNQIRVIRTKTKGEQMAFLSVTDTQKKFD 922

Query: 1029 ANFFP 1033
               FP
Sbjct: 923  VTLFP 927


>gi|325978163|ref|YP_004287879.1| DNA polymerase III DnaE [Streptococcus gallolyticus subsp.
            gallolyticus ATCC BAA-2069]
 gi|325178091|emb|CBZ48135.1| DNA polymerase III DnaE [Streptococcus gallolyticus subsp.
            gallolyticus ATCC BAA-2069]
          Length = 1035

 Score =  459 bits (1181), Expect = e-126,   Method: Composition-based stats.
 Identities = 285/1025 (27%), Positives = 480/1025 (46%), Gaps = 101/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   +    +     I I D +NL++A  F ++A    +QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLEGYVKAAKSLGYQTIGIMDKDNLYAAFHFIEEAKKQSLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L   +++ L +             + LL     GY+ L+++ S+    D       
Sbjct: 62   VGLELSFAVEETLSLK------------LYLLAQDTTGYKNLMKISSKQMSSD------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L  L +        LTG        A      +  E   L F        Y+ +  + 
Sbjct: 103  IQLDELSDY-------LTG-------VAIVVPYFEELETLSLPF------DYYIGVDVNS 142

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                            +E P+       +    + E   +L A+  +  +          
Sbjct: 143  PQ------------KAYEKPIFPLYTVRYFETNEVETLHMLHAIRDNISLKDAPPASQGQ 190

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            +    +     +     P+ALEN  ++     +       +          + QK  + E
Sbjct: 191  NLLACDI-LTQAFRETFPQALENQEKLVSNIHYEFDTDLKLPR-------FNRQKPAQEE 242

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L  +  AGL         AK      Y++RL  EL+VI +M F  YFLIV D +++ +  
Sbjct: 243  LIERTEAGLR--------AKNLWLPAYQERLKKELSVIHKMGFDDYFLIVWDLLRFGRSR 294

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ +YAL IT IDP++ +LLFERFLN +R SMPD DID     R E 
Sbjct: 295  GYYMGMGRGSAAGSLVSYALDITGIDPVKNNLLFERFLNEERYSMPDIDIDLPDVYRSEF 354

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV+N+YG    AQI+TF +  AK A+RDV +    P  ++  + K I           
Sbjct: 355  LHYVRNRYGSLHSAQIVTFSTFGAKQAIRDVFKRFGAPEHELTNITKKISF---RDTLTS 411

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+   +     +   I++++EG  R  S HAAG+V+ D  L++ +P+     
Sbjct: 412  VYEKNLSFRQIINSKIEYQKAFAIAKRIEGNPRQTSIHAAGVVMSDDNLTEHIPL--KAG 469

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             D+ +TQ++ + +E  GL+K DFLGL+ LT +Q+  + +A+   V +D+  I  +D +T 
Sbjct: 470  EDMMITQYDAQAVEANGLLKMDFLGLRNLTFVQRMQEKVAKDYGVTIDIKSIDLEDKKTL 529

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E +G    L+ +QP   EDI+A  SL RPG  D    +  R+ G+E
Sbjct: 530  ELFAAGKTKGIFQFEQAGAINLLKRIQPRQFEDIVATTSLNRPGASDYTENFIKRRFGQE 589

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  I PL+ P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  ++M K +
Sbjct: 590  EVDLIDPLVAPILEPTYGIMLYQEQVMQIAQIYAGFTLGKADLLRRAMSKKKADDMQKME 649

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              F+ GA + G     A ++F  +AKFA YGFN+SHA AY+ +++Q A+ K HYP  F  
Sbjct: 650  SDFLEGAQRLGRPLETAKDLFSRMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFYD 709

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +            +  DA     ++    +NT     K+   +IY  L  ++GV    
Sbjct: 710  VMLN------YSSADYITDALDSQFKVKKIDINTVPYSDKISAGQIYLGLKNLRGVPRDL 763

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               I+E   ++PF S+EDF +R+      R ++  LV  GA D F  +R +++++LD + 
Sbjct: 764  CYWIIE---NRPFSSVEDFLTRLPENYQKREMITPLVEVGAFDQFDKNRRKIIENLDPLF 820

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             +   +         ++FA    ++ +          +++ ++  EQ +LG   S HPL 
Sbjct: 821  IFVNEL--------GSLFADTSYSWIET------EDYSNAEKYRLEQSLLGVGISPHPLL 866

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYE 1028
                 + +   K +             +   +   +  +T+ KG ++ +++ ++  K+++
Sbjct: 867  ----EIARQSTKDFTALADLQENTEATILVELNQIRVIRTKTKGEQMAFLSVTDTQKKFD 922

Query: 1029 ANFFP 1033
               FP
Sbjct: 923  VTLFP 927


>gi|331266518|ref|YP_004326148.1| DNA polymerase III subunit alpha [Streptococcus oralis Uo5]
 gi|326683190|emb|CBZ00808.1| DNA polymerase III subunit alpha [Streptococcus oralis Uo5]
          Length = 1033

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 296/1022 (28%), Positives = 479/1022 (46%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +AI D +NL+ A  F +     GIQP+I
Sbjct: 3    AQLDTKTVYSFMESVVSIEKYVQTAKVYGYSHLAIMDVDNLYGAYHFLEVTRKYGIQPLI 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ +   +                    L  + +GYQ L++L +        K + R 
Sbjct: 63   GLEMSLIKDEKNISFR-------------FLALSTKGYQELMKLSTL-------KMTGRK 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S       E + ++     G ID+                     G   ++ +     
Sbjct: 103  NWSDFTS-HLEDVAVIVPYFDG-IDQLDL------------------GHDYFIGVS---- 138

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             D ++E            P++        ++ED +   +L AV  +  + + D       
Sbjct: 139  PDTHQEV--------FTKPILPLYQVNSFAKEDLQVLQILSAVKDNVSMREVDLHSQ-QG 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            ++L          +  P+AL N  ++    S+ L          ++    + ++    EL
Sbjct: 190  NFLPASDLEARFKNRFPQALANLQDLIENVSYQLD-------PSLKLPRFNPERPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G           KG  +  YR+RL+ EL VI  M F  YFL+V D +++ +   
Sbjct: 243  RARAEKG--------LSDKGLTSAIYRERLNEELAVIHDMGFDDYFLVVWDLLRFGRSQG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AY+L IT IDP+  +L+FERFLN +R +MPD DID     R E I
Sbjct: 295  YYMGMGRGSAVGSLVAYSLDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDLYRPEFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG + VAQI+T+ +  AK A+RDV +   +P  ++  + K I           A
Sbjct: 355  RYVRDRYGSQHVAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITKKISF---RDTLTTA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI++K+EG  R  S HAAG+V+ D+ L+  +P+      
Sbjct: 412  YEKNLQFRQVINSKIEYQKAFEIARKIEGYPRQTSIHAAGVVMSDQDLTDYIPLKYG--E 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + LA+       +  I  +D ET  
Sbjct: 470  DMLITQYDAHGVEANGLLKMDFLGLRNLTFVQKMQELLAESEGVHLKIEEIDLEDKETLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP   E+++A  SL RPG  D I  +  RK+GKEK
Sbjct: 530  LFASGNTKGIFQFEQPGAIRLLKRVQPQVFEEVVATTSLNRPGASDYIDNFVARKHGKEK 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK  +EM   KE
Sbjct: 590  VTVLDPVLEDILSSTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAKEMHLMKE 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI+GA K G  +  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  DFITGAVKLGHLEEKANQVFAVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFFQV 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA Q    + P ++N+     K+   +IY  L AIKG+    +
Sbjct: 710  MLN------YSSSDYIVDALQMGFDVAPLAINSIPYHDKIAKKKIYLGLKAIKGMPRDLS 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++PF S+EDF +R+        +L  LV  G  D F  +R ++L +L N+  
Sbjct: 764  YWIIE---NRPFSSIEDFVTRLPKNYKKLSLLTPLVELGLFDEFDKNRQKILVNLPNLFV 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +          +FA    ++++            + +F  EQ ++G   S HPL  
Sbjct: 821  FVEEL--------GGLFADTNYSWTEA------DDFTEAEKFYKEQELIGVGISPHPLQ- 865

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                L K  +           G    L   V   +  +T+KG  + ++   +     +  
Sbjct: 866  ---TLAKQALYPTTPITNLTEGAQATLLVEVQKIKVIRTKKGESMAFLQVHDSKSRMDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  VF 924


>gi|293365265|ref|ZP_06611982.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus oralis
            ATCC 35037]
 gi|307703806|ref|ZP_07640747.1| DNA polymerase III subunit alpha [Streptococcus oralis ATCC 35037]
 gi|291316715|gb|EFE57151.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus oralis
            ATCC 35037]
 gi|307622641|gb|EFO01637.1| DNA polymerase III subunit alpha [Streptococcus oralis ATCC 35037]
          Length = 1033

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 289/1022 (28%), Positives = 473/1022 (46%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +AI D +NL+ A  F +     GIQP+I
Sbjct: 3    AQLDTKTVYSFMESVVSIEKYVQMAKEYGYSHLAIMDVDNLYGAYHFLEVTRKYGIQPLI 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ +                    S+  L  + +GYQ L++L +        K + R 
Sbjct: 63   GLEMTL-------------IKDKENISLRFLALSTKGYQELMKLSTL-------KMTGRK 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S       E + ++    +G +++                     G   ++ +     
Sbjct: 103  NWSDFTS-HLEDVAIVVPYFNG-VEQLDL------------------GVDYFIGVSPDTP 142

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             +                P++         +ED +   +L AV  +  + + D       
Sbjct: 143  QE------------VFTSPILPLYQVNSFEKEDIQVLQILSAVKDNVSLREVDLHSQ-QG 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +L          +  P+AL            +++  +  +   ++    + ++    EL
Sbjct: 190  IFLPASDLEARFKNRFPQAL-------ANLQGLIENVSYQIDPSLKLPRFNPERPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G           KG  +  Y +RL+ EL VI  M F  YFL+V D +++ +   
Sbjct: 243  RERAEQG--------LSDKGLTSAIYHERLNEELAVIHDMGFDDYFLVVWDLLRFGRSQG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AY+L IT IDP+  +L+FERFLN +R +MPD DID     R E I
Sbjct: 295  YYMGMGRGSAVGSLVAYSLDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDLYRPEFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG + VAQI+T+ +  AK A+RDV +   +P  ++  + K I           A
Sbjct: 355  RYVRDRYGSQHVAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITKKISF---RDTLTTA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI++K+EG  R  S HAAG+V+ D+ L+  +P+      
Sbjct: 412  YEKNLQFRQIINSKIEYQKAFEIARKIEGYPRQTSIHAAGVVMSDQDLTDYIPLKYG--E 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + LA+       +  I  +D ET  
Sbjct: 470  DMLITQYDAHGVEANGLLKMDFLGLRNLTFVQKMQELLAESEGVHLKIEDIDLEDKETLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E  G  + L+ +QP   E+++A  SL RPG  D I  +  RK+GKEK
Sbjct: 530  LFVAGNTKGIFQFEQPGAIRLLKRVQPQVFEEVVATTSLNRPGASDYIDNFVARKHGKEK 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK  +EM   KE
Sbjct: 590  VTVLDPALEDILSSTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAKEMHLMKE 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI+GA K G ++  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  DFITGAMKLGHTEEKANQVFAVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFFQV 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA Q   ++ P ++N+     K+   +IY  L AIKG+    +
Sbjct: 710  MLN------YSSSDYIVDALQMGFEVAPLAINSIPYHDKIAQKKIYLGLKAIKGMPRDLS 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++PF S+EDF +R+        +L  LV  G  D F  +R + L +L N+  
Sbjct: 764  YWIIE---NRPFSSIEDFVTRLPKNYKKLSLLTPLVELGLFDEFDKNRQKNLVNLPNLFV 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +          +FA    ++++            + +F  EQ ++G   S HPL  
Sbjct: 821  FVEEL--------GGLFADTNYSWTEA------DDFTEAEKFYKEQELIGVGISPHPLQ- 865

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                L K  +           G    L   V   +  +T+KG  + ++   +     +  
Sbjct: 866  ---TLAKQALYPTTPITNLTEGAQATLLVEVQKIKVIRTKKGESMAFLQVHDSKSRMDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  VF 924


>gi|94988724|ref|YP_596825.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS9429]
 gi|94992547|ref|YP_600646.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS2096]
 gi|94542232|gb|ABF32281.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS9429]
 gi|94546055|gb|ABF36102.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS2096]
          Length = 1036

 Score =  458 bits (1179), Expect = e-126,   Method: Composition-based stats.
 Identities = 287/1026 (27%), Positives = 497/1026 (48%), Gaps = 102/1026 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVL-------------LNLIAQNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L +   EG+ ++   S G  D                          Y+ +    
Sbjct: 102  LHMDYLCQ-HLEGIAVII-PSKGWSDTLVV------------------PFDYYIGV---- 137

Query: 191  GYDRYRESQVVQL-AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D+Y  + +  + +    +PL       + +++D E   +L A+  + +   +     +
Sbjct: 138  --DQY--TDLSHMDSKRQLIPL---RTVRYFAQDDMETLHMLHAIRDN-LSLAETPVVES 189

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                   +       +  P+AL+N  ++     +    +  +          +  K  + 
Sbjct: 190  DQELADCQQLTAFYQTHCPQALQNLEDLVSGIYYDFDTNLKLPH-------FNRDKSAKQ 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL++   AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELQDLTEAGLKE--------KGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I          
Sbjct: 355  FLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGF---KDSLA 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 412  TVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPL--KS 469

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+    ++D++ I  +D +T
Sbjct: 470  GDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDPQT 529

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ G+
Sbjct: 530  LALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQ 589

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EKI  I P+I  +L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM K 
Sbjct: 590  EKIDLIDPVIASILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQKM 649

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 650  EEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 709

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M            +  DA + + Q+   ++N+     K+  ++IY  L  IKG+   
Sbjct: 710  DIMMN------YSSSDYITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRD 763

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E     PF+S+EDF +R   K   +  LE L+  G  DCF  +R ++L +LD +
Sbjct: 764  FAYWIIEQR---PFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNLDGL 820

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +   +         ++F+    ++ D          +++ ++  EQ ++G   S HPL
Sbjct: 821  LVFVNEL--------GSLFSDSSFSWVDT------KDYSATEKYSLEQEIVGVGMSKHPL 866

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   + +      ++ +   +   + S +  +T+  G ++ +++ ++  K+ 
Sbjct: 867  ----IDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKL 922

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 923  DVTLFP 928


>gi|139473654|ref|YP_001128370.1| DNA polymerase III DnaE [Streptococcus pyogenes str. Manfredo]
 gi|134271901|emb|CAM30139.1| DNA polymerase III alpha subunit [Streptococcus pyogenes str.
            Manfredo]
          Length = 1036

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 287/1026 (27%), Positives = 496/1026 (48%), Gaps = 102/1026 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVL-------------LNLIAQNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L +   EG+ ++   S G  D                          Y+ +    
Sbjct: 102  LHMDYLCQ-HLEGIAVII-PSKGWSDTLVV------------------PFDYYIGV---- 137

Query: 191  GYDRYRESQVVQL-AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D+Y  + +  + +    +PL       + +++D E   +L A+  + +   +     +
Sbjct: 138  --DQY--TDLSHMDSKRQLIPL---RTVRYFAQDDMETLHMLHAIRDN-LSLAETPVVES 189

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                   +       +  P+AL+N  ++     +    +  +          +  K  + 
Sbjct: 190  DQELADCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLKLPH-------FNRDKSAKQ 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL+    AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELQELTEAGLKE--------KGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I          
Sbjct: 355  FLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGF---KDSLA 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 412  TVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPL--KS 469

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+    ++D++ I  +D +T
Sbjct: 470  GDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDPQT 529

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ G+
Sbjct: 530  LALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQ 589

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM K 
Sbjct: 590  EKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQKM 649

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 650  EEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 709

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M            +  DA + + Q+   ++N+     K+  ++IY  L  IKG+   
Sbjct: 710  DIMMN------YSSSDYITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRD 763

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E     PF+S+EDF +R   K   +  LE L+  G  D F  +R ++L +LD +
Sbjct: 764  FAYWIIEQR---PFNSVEDFLTRAPEKYQKKFFLEPLIKIGLFDYFEPNRKKILDNLDGL 820

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +   +         ++F+    ++ D          +++ ++  EQ ++G   S HPL
Sbjct: 821  LVFVNEL--------GSLFSDSSFSWVDT------KDYSATEKYSLEQEIVGVGMSKHPL 866

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   + +      ++ +   +   + S +  +T+  G ++ +++ ++  K+ 
Sbjct: 867  ----IDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKL 922

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 923  DVTLFP 928


>gi|241889100|ref|ZP_04776404.1| DNA polymerase III subunit alpha [Gemella haemolysans ATCC 10379]
 gi|241864349|gb|EER68727.1| DNA polymerase III subunit alpha [Gemella haemolysans ATCC 10379]
          Length = 1089

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 298/1025 (29%), Positives = 513/1025 (50%), Gaps = 64/1025 (6%)

Query: 15   QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            QVHS+Y LL   +   ++  K+A D Q ++ I D  N++ A++  + +   GI  I G +
Sbjct: 6    QVHSAYDLLNSTIKYESLFSKLAKDNQKSVVIVDP-NMYGAIKAYKASKKVGINLIQGLE 64

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            +++     L   N             LL  T + + +L+E+ ++   ++  + +V    +
Sbjct: 65   VNLGYGIGLLKFN-------------LLCKTEKMFYKLLEISTK--FMNGEEWTVEDFAN 109

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR 194
             + +   +   +LT      +D           +  L  +   FG      +  +  YD 
Sbjct: 110  DMIDYRED--FVLT-----VVDELRDSMEFSYLKNLLSKYDFYFGFNESFQVGLYSDYD- 161

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                            +V T  S +L++E Y+   V  A+  +  ++ +    ++ D ++
Sbjct: 162  ---------------NIVYTKPSFYLNKEHYQQVIVSRAIRDNKKLNIQGLTTISGDDFV 206

Query: 255  KNRSEMVSIFS---DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE-ENE 310
            + + +   I +   +   A+       ++       +      +   +    +KEE   +
Sbjct: 207  REKKDFEEILALGDEELYAIFEKSFANQKLIIDSCEYELNFSGYHLPKYIYGEKEEIFEK 266

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L +K      V+        G     Y++R  +EL +I  M F+ YFLIV DF+++AK N
Sbjct: 267  LSSKEYLHYLVQKGVKEKLIGKDLYQYQKRYSYELKIIDEMGFNDYFLIVYDFVKYAKDN 326

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I VG GRGS AGS+  Y L IT+ DPL ++LLFERFLN +R+SMPD DIDF   RRDEV
Sbjct: 327  GILVGAGRGSAAGSLVCYLLDITEADPLEYNLLFERFLNKERISMPDIDIDFQDTRRDEV 386

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YV+ KYG ++VAQIITF + Q+K+A R+  R LQ     +  +   I +        +
Sbjct: 387  IKYVEEKYGSDKVAQIITFTTFQSKSAARESARILQFDEQTLKFISSNISSTR---TLKE 443

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR-PLSQLVPMYRDV 549
                    R          R   I+  LE L ++ S HAAGIVI D  PL    P+  + 
Sbjct: 444  CYEISEELRTFINTSNINKRWFSIALSLEHLPKNPSVHAAGIVISDDKPLVNYTPLA-ES 502

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
                 +TQ+ M  +E  GL+K DFLG++ LT++   ++ + +     D++ I + D + Y
Sbjct: 503  NMTKYLTQWTMDDVESVGLLKIDFLGIRYLTMVSSIVEEIRKENPAFDITKINYQDPKVY 562

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ ESSGM++ L  ++P    DI+A+ +LYRPGP+  I VY  RKN +E
Sbjct: 563  ELFAKGKTEGIFQFESSGMKEKLNLLKPTEFNDIVAMNALYRPGPMAQIEVYVRRKNKEE 622

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +++  HP ++ +LK+T GVI+YQEQ+M IA   +  SL+EAD +RRA+ KK KE+++   
Sbjct: 623  QVIYPHPHLEKILKDTYGVIVYQEQIMLIAVNFAHMSLNEADNMRRAVSKKKKEDLEYYG 682

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              F+  +   G    +A  +F+L+  FA+YGFNKSHA  Y++++Y+ A++K +Y   F+ 
Sbjct: 683  RIFVEKSVAAGYDIKVAEKLFDLIVTFANYGFNKSHAVVYSMLAYRLAYLKVYYTKHFMT 742

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +   + + +KI ++ Q+     I ++ P VN    +F+V  N I ++L AIK VG  +
Sbjct: 743  ALLNNVISSEKKINEYKQELMNLGINLVKPDVNRSLANFRVFKNDIVFALTAIKNVGYRS 802

Query: 850  ARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
               I++   +  P+  ++DF  R++ KK++ +   SLV AGALD FGY+R  L++ +++ 
Sbjct: 803  GYEIVQDRINFGPYLDIDDFLKRMN-KKVDYQAAVSLVKAGALDTFGYNRATLMKKVNDY 861

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                +    N                   + +E+    + + + + E+ V G YF  HP+
Sbjct: 862  YSDNRQFINNVRV-------ALSAESGLTLKVEEIEDYSITEKIQMEKEVTGTYFLKHPV 914

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
             V K    K      +     +  + +     ++++++ +T+ G  + ++T ++   +Y+
Sbjct: 915  QVEKE---KYSYLPLQYIGGEVSDSYVE----IITRKEIRTKNGDYMAFLTVNDGKNDYD 967

Query: 1029 ANFFP 1033
               FP
Sbjct: 968  VTVFP 972


>gi|19746207|ref|NP_607343.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS8232]
 gi|25452932|sp|Q8P0S5|DPO3A_STRP8 RecName: Full=DNA polymerase III subunit alpha
 gi|19748390|gb|AAL97842.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS8232]
          Length = 1036

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 287/1026 (27%), Positives = 497/1026 (48%), Gaps = 102/1026 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEVEILYQERQVL-------------LNLIAQNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +L +   EG+ ++   S G  D                          Y+ +    
Sbjct: 102  LHMDYLCQ-HLEGIAVII-PSKGWSDTLVV------------------PFDYYIGV---- 137

Query: 191  GYDRYRESQVVQL-AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D+Y  + +  + +    +PL       + +++D E   +L A+  + +   +     +
Sbjct: 138  --DQY--TDLSHMDSKRQLIPL---RTVRYFAQDDMETLHMLHAIRDN-LSLAETPVVES 189

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                   +       +  P+AL+N  ++     +    +  +          +  K  + 
Sbjct: 190  DQELADCQQLTTFYQTHCPQALQNLEDLVSGIYYDFDTNLKLPH-------FNRDKSAKQ 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL++   AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELQDLTEAGLKE--------KGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALDITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I          
Sbjct: 355  FLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGF---KDSLA 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 412  TVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDTLTNHIPL--KS 469

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+    ++D++ I  +D +T
Sbjct: 470  GDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDIAAIDLEDPQT 529

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ G+
Sbjct: 530  LALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQ 589

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM K 
Sbjct: 590  EKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQKM 649

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 650  EEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 709

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M            +  DA + + Q+   ++N+     K+  ++IY  L  IKG+   
Sbjct: 710  DIMMN------YSSSDYITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRD 763

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E     PF+S+EDF +R   K   +  LE L+  G  D F  +R ++L +LD +
Sbjct: 764  FAYWIIEQR---PFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDYFEPNRKKILDNLDGL 820

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +   +         ++F+    ++ D          +++ ++  EQ ++G   S HPL
Sbjct: 821  LVFVNEL--------GSLFSDSSFSWVDT------KDYSATEKYSLEQEIVGVGMSKHPL 866

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   + +      ++ +   +   + S +  +T+  G ++ +++ ++  K+ 
Sbjct: 867  ----IDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKL 922

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 923  DVTLFP 928


>gi|146134269|dbj|BAF57223.1| DNA polymerase III subunit alpha [Streptococcus bovis]
          Length = 1035

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 275/1025 (26%), Positives = 467/1025 (45%), Gaps = 101/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   + +        I I D +NL++A  F  KA + G++P+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLEGYVKEAKVLGYQTIGIMDKDNLYAAFHFITKAKSEGLRPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L +++Q+NL +            S+ L+     GY+ L+++ SR            
Sbjct: 62   LGLELTLNLQENLSL------------SVYLIARDTTGYKNLMKVSSRQMTSG------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L  L+E  + GL ++     G    +                        Y+ +  H 
Sbjct: 103  IQLEDLKEYLS-GLAVIIPYYDGLESLSL-------------------PFDYYIGVDVHS 142

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                            ++ PL+  +   + +  + E   +L A+  +  +          
Sbjct: 143  EE------------RDYDKPLIPLHTVRYFNTNEVETLHMLHAIRDNISLKDAPAAPQGQ 190

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                 +                    +A                  +          + E
Sbjct: 191  QLMACDILTQAFEQKFPQALENLEKLVAEIHYDFNSELKLPRFNRQKP--------AQEE 242

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L     AGL+        AK     +Y++RL  EL+VI +M F  YFLIV D +++ +  
Sbjct: 243  LIELTEAGLK--------AKNLWLPEYQERLAKELSVIHKMGFDDYFLIVWDLLRFGRSR 294

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ +YAL IT IDP++ +LLFERFLN +R SMPD DID     R E 
Sbjct: 295  GYYMGMGRGSAAGSLVSYALDITGIDPVKNNLLFERFLNEERYSMPDIDIDLPDVYRSEF 354

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV+N+YG    AQI+TF +  AK A+RDV +    P  ++  + K I           
Sbjct: 355  LHYVRNRYGSLHSAQIVTFSTFGAKQAIRDVFKRFGAPEHELTNITKKISFRDN---LST 411

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+   +     +   I++++EG  R  S HAAG+V+ D  L++ +P+     
Sbjct: 412  VYEKNLSFRQIINSKIEYQKAFAIAKRIEGNPRQTSIHAAGVVMSDDNLTEHIPL--KAG 469

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  + +A+   + +D+  I  +D +T 
Sbjct: 470  EDMMITQYDAAAVEANGLLKMDFLGLRNLTFVQRMQEKVAKEYGITIDIKSIDLEDQQTL 529

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E +G    L+ ++P   EDI+A  SL RPG  D    +  R+ G+E
Sbjct: 530  ALFAAGKTKGIFQFEQAGAINLLKRIKPQKFEDIVATTSLNRPGASDYTENFIRRRFGQE 589

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I  I PL+  +L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  E+M K +
Sbjct: 590  AIDLIDPLVAKILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKKAEDMQKME 649

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              F+ GA   G     A ++F  +AKFA YGFN+SHA AY+ +++Q A+ K HYP  F  
Sbjct: 650  SEFLKGAQALGRPLETAKDLFSRMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFYD 709

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +            +  DA +   +I    +N    + K+ D RIY  L  ++ +    
Sbjct: 710  VMLN------YSSADYITDAMESEFRIKKIDINIVPYNDKIADGRIYLGLKNLRALPRDL 763

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               I++     PF S+EDF +++      + ++  LV  GA D F  +R +++++L+ + 
Sbjct: 764  CYWIIDHR---PFSSIEDFLTKLPENYQKKELITPLVEVGAFDNFEKNRRKIIENLEPLF 820

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             +   +         ++FA     +       +     ++ ++  EQ +LG   S HPL 
Sbjct: 821  MFVNEL--------GSLFAENSYNWI------EVEDFPNTEKYRQEQGLLGVGISPHPLL 866

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYE 1028
                 + K     +             +   +   +  +T+ KG ++ ++  ++  K+++
Sbjct: 867  ----EIAKNSSIAFTALSDLHENTEATILVELSQIRVIRTKTKGEQMAFLNVTDTQKKFD 922

Query: 1029 ANFFP 1033
               FP
Sbjct: 923  VTLFP 927


>gi|15675237|ref|NP_269411.1| DNA polymerase III DnaE [Streptococcus pyogenes M1 GAS]
 gi|71910803|ref|YP_282353.1| DNA polymerase III DnaE [Streptococcus pyogenes MGAS5005]
 gi|81175277|sp|P0C0F3|DPO3A_STRP1 RecName: Full=DNA polymerase III subunit alpha
 gi|13622407|gb|AAK34132.1| putative DNA polymerase III (alpha subunit) [Streptococcus pyogenes
            M1 GAS]
 gi|71853585|gb|AAZ51608.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS5005]
          Length = 1036

 Score =  458 bits (1177), Expect = e-126,   Method: Composition-based stats.
 Identities = 287/1026 (27%), Positives = 496/1026 (48%), Gaps = 102/1026 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEIEILYQERQVL-------------LNLIAQNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +  +   EG+ ++   S G  D                          Y+ +    
Sbjct: 102  LHMDYFCQ-HLEGIAVII-PSKGWSDTLVV------------------PFDYYIGV---- 137

Query: 191  GYDRYRESQVVQL-AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D+Y  + +  + +    +PL       + +++D E   +L A+  + +   +     +
Sbjct: 138  --DQY--TDLSHMDSKRQLIPL---RTVRYFAQDDMETLHMLHAIRDN-LSLAETPVVES 189

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                   +       +  P+AL+N  ++     +    +  +          +  K  + 
Sbjct: 190  DQELADCQQLTAFYQTHCPQALQNLEDLVSGIYYDFDTNLKLPH-------FNRDKSAKQ 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL++   AGL+         KG   + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELQDLTEAGLKE--------KGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG +  AQI+TF +   K A+RDV +   +P  ++  L K I          
Sbjct: 355  FLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNLTKKIGF---KDSLA 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 412  TVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDALTNHIPL--KS 469

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+    ++D++ I  +D +T
Sbjct: 470  GDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDITAIDLEDPQT 529

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ G+
Sbjct: 530  LALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQ 589

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM K 
Sbjct: 590  EKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQKM 649

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 650  EEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 709

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M            +  DA + + Q+   ++N+     K+  ++IY  L  IKG+   
Sbjct: 710  DIMMN------YSSSDYITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRD 763

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E     PF+S+EDF +R   K   +  LE L+  G  DCF  +R ++L +LD +
Sbjct: 764  FAYWIIEQR---PFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNLDGL 820

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +   +         ++F+    ++ D          + + ++  EQ ++G   S HPL
Sbjct: 821  LVFVNEL--------GSLFSDSSFSWVDT------KDYSVTEKYSLEQEIVGVGMSKHPL 866

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   + +      ++ +   +   + S +  +T+  G ++ +++ ++  K+ 
Sbjct: 867  ----IDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKL 922

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 923  DVTLFP 928


>gi|84684454|ref|ZP_01012355.1| DNA polymerase III, alpha subunit [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667433|gb|EAQ13902.1| DNA polymerase III, alpha subunit [Rhodobacterales bacterium
           HTCC2654]
          Length = 960

 Score =  457 bits (1176), Expect = e-126,   Method: Composition-based stats.
 Identities = 245/998 (24%), Positives = 418/998 (41%), Gaps = 80/998 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---------K 61
           FV L + S+++ L G       +D+ A     A+A+ D N++   +             +
Sbjct: 2   FVELCITSNFTFLTGGSHAEEYVDRAALTGMRALAVADVNSVAGIVRAHTFSREIAKMAE 61

Query: 62  AC-----AAGIQPIIG----CQL----DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           A        G   IIG      L     + + +  ++    +       +I  L      
Sbjct: 62  ARARLEAEQG---IIGPPKPAHLPEPYRLPIDNAPRLLPGARIVTEEGLAITALPRDRAA 118

Query: 109 YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
           + RL  L+S   L  + K S  I L  L            G   G               
Sbjct: 119 WGRLSRLISTGRLRAE-KGSCLIRLGDL-----------GGALDGM--ELLLHPPGAGLR 164

Query: 169 KRLLTFKKLFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
           KR+      + D +++ L  R+ G D  R + +  LA    LP VA+   +       + 
Sbjct: 165 KRVGPLLARYRDDMHLVLAPRYDGRDAQRFTHLAALAKELGLPTVASAEPIMHHGRRRKL 224

Query: 228 HDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            DVL AV     V +     +   +  L++ SEM+ +F+   +A+  + EIA R  F L 
Sbjct: 225 VDVLSAVREGVRVEALGHLAQPNAERRLRSESEMLRLFAGHEDAVHRSGEIADRLGFQLD 284

Query: 287 VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
                  R+         +     L   A  GL  R   GA       +   + L+ EL 
Sbjct: 285 E-----LRYEYPSEIADGETPSARLSRLARRGLRERYPAGA------PERVSKMLEHELA 333

Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
           +IA++ +  YFL V D + +A+   I    GRGS A SV  YAL +T + P   +++FER
Sbjct: 334 LIAKLNYEPYFLTVNDIVAFARSRGIL-CQGRGSAANSVVCYALGVTSVSPEIGTMVFER 392

Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
           F++  R   PD D+DF  +RR+EVI+++  +YG  R     T    + K A+R+VGRA+ 
Sbjct: 393 FVSEARDEPPDIDVDFEHERREEVIQHIYQRYGRHRAGLCATVIHYRGKRAIREVGRAMG 452

Query: 467 MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
           +    +  +   +       +    + +          DP +D++L++  +++G  RH S
Sbjct: 453 LTEDTIASMSSQVWGWGGTGMRSARLREI----GLDPDDPKLDQVLDLVDEIQGFPRHLS 508

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            H  G +I +  L +LVP+      D  V  ++   I+  G++K D L L  LT ++K+ 
Sbjct: 509 QHVGGFIITEGRLDELVPIENATMEDRTVICWDKDDIDALGILKVDVLALGMLTCIRKAF 568

Query: 587 DFLAQR-GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             +    G+   L+ +P +D   Y +L    +LG+FQ+ES      L  M+P    D++ 
Sbjct: 569 GLMDSHLGIDHTLASLPPEDPVVYDMLCRADSLGVFQVESRAQMNFLPRMKPRTFYDLVI 628

Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            V++ RPGPI   +V+   +    +  +      +  +L +T GV ++QEQ MQIA   +
Sbjct: 629 QVAIIRPGPIQGDMVHPFIRRRNGEEAVEFPSDALGAVLGKTLGVPLFQEQAMQIAITGA 688

Query: 704 GYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
           G++  EAD LRR++    K   +   + RFI G   NG     A   F  +  F  YGF 
Sbjct: 689 GFTPEEADQLRRSLATFKKHGSVSDFRTRFIRGMRANGYDLDFAERCFSQIEGFGSYGFP 748

Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           +SHAA++A++ Y +AW+K H+P  F  A +  +        +  +DAR+  +++ P  +N
Sbjct: 749 ESHAASFALLVYASAWIKCHHPGIFCCALLNAQPMGFYAPAQIVRDAREHGVEVRPVCIN 808

Query: 823 TPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
               D  +  +      +      ++G+    A  I  A  +  +  +ED   R     +
Sbjct: 809 ASYWDNVMEPDGKGGLAVRLGFRQLRGMAEEEAAWITAARGNG-YAVVEDVWRR---SGV 864

Query: 878 NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
           + R+L  L  A A    G SR + L     I             K   +FA +       
Sbjct: 865 SPRLLARLAEADAFADLGLSRREALWEARAI----------TGEKPLPLFAGDLDGEGIV 914

Query: 938 ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
                F   +   +   +   +      HP+ + + +L
Sbjct: 915 EPAAYFPEMSEGEQVVEDFVSMRLTLRSHPIALIRHML 952


>gi|253795644|ref|YP_003038740.1| DNA polymerase III, alpha subunit [Candidatus Hodgkinia cicadicola
           Dsem]
 gi|253739952|gb|ACT34287.1| DNA polymerase III, alpha subunit [Candidatus Hodgkinia cicadicola
           Dsem]
          Length = 995

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 368/978 (37%), Positives = 544/978 (55%), Gaps = 51/978 (5%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           ++    FV+L+V S+YS+L+  LS++ I    A   QPA+A+TDT +L  ALEF  K  A
Sbjct: 1   MQARREFVNLKVRSTYSVLDSTLSVDRIAQLAAERGQPAVALTDT-SLHGALEFCVKCDA 59

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV-STAEGYQRLIELVSRMYLLD 123
           AG++PI+GC+L +D Q  +             P +V L   + +GY  L++LV      +
Sbjct: 60  AGVKPIVGCKLLVDCQHAVASAP---------PLLVTLAVKSEKGYANLLKLV---NNSE 107

Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            G +  +I L+ L     +GL+ + G + G + + +     + A       +      + 
Sbjct: 108 VGARHHKITLAALAA-SAQGLLAIAGEAGGMVWQLYKKLGFEGASTAFALLQDSMEGSVC 166

Query: 184 VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             +QR        E  VV+ A    L LVATN +LF +  D+E + VL A++       +
Sbjct: 167 AEVQRGAVVWPEYEQAVVEAAGALSLMLVATNETLFETRADFEVYKVLRAISS------R 220

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
           D    +  ++ K+ ++M+S F+D+P+AL  T +++  C F LQ  A              
Sbjct: 221 DEVGASEHNFFKSYADMLSRFADMPKALAATAKVSALCEFRLQARAVT-----LPAFSGA 275

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            + E   L  KAV  LE +  +   A       Y +RL +EL VI R  +SGYFLIV+DF
Sbjct: 276 VRREARALYTKAVRALEHQFYKVGKANKPW---YHRRLLWELGVITRASYSGYFLIVSDF 332

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
             WAK +N+ VGPGRGS AGS+ AY+L +T++DP+   LLFERFLN DR  +PD D+DFC
Sbjct: 333 TLWAKAHNVYVGPGRGSAAGSLVAYSLGVTNVDPIAHGLLFERFLNADRAGLPDIDVDFC 392

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              R++V+RY Q KYG   V QI TFG+LQ +AA++DV R L++P+   + LCK +P   
Sbjct: 393 HQGREQVVRYAQFKYGELCVGQISTFGTLQVRAAIKDVSRCLEVPFETANALCKAVP-TY 451

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              +     A     R A +    + +L+ +++KL G+YR  STHAAG+VI +  L   V
Sbjct: 452 GRGLESVYAALA---RTALVPAELLAKLMAVTEKLIGVYRLVSTHAAGLVISNSQLRDSV 508

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
           P   D  + + V +++M W+E AGL KFD LGLKTL  + + L  L    V V L     
Sbjct: 509 PTAWDEANRVSVVRYSMNWVESAGLPKFDLLGLKTLAAVDEVLTQLMASRVNVGLECFG- 567

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
              + + L+     LG FQLES GM++ ++ + P  + D+ AL++LYRPGP+ +I  Y++
Sbjct: 568 -GEKAFKLICGGRVLGTFQLESRGMKKHIKHVLPSSLNDLAALIALYRPGPMKHIKQYSD 626

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            K+G    VS+H  +D +L ET GV+IYQEQVM IAQ L+GYSLSEADVLR+AM KK   
Sbjct: 627 TKHGSAARVSLHQAVDHLLDETYGVVIYQEQVMLIAQKLAGYSLSEADVLRKAMAKKDMR 686

Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           EM  Q++RF+ GA  NG+ + +A ++F+ LA+FADYGFNKSHA AY+ ++Y TA +K  +
Sbjct: 687 EMLVQRQRFVGGAVANGVKRALAASLFDGLARFADYGFNKSHALAYSALAYITAHLKASF 746

Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
           P+EF AA+M++E+    K+     +A    I+ + PSV  P + FK G+  I++ L+AIK
Sbjct: 747 PLEFYAANMSVEIAEQAKMSSLYYEAVSSGIKFVAPSVQAPFLKFKAGNGFIHFPLSAIK 806

Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
           G+G      I  A   +PF  L DFC RV  +   +RVL+SL+ AGA+DCFG SR  L+ 
Sbjct: 807 GIGEPVVASIAAARGSQPFADLTDFCVRVSPRAATKRVLKSLIAAGAMDCFGASRRALMA 866

Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL-------EKF-------SVENSS 949
           SLD + + A+  +K R +   ++    K                             + S
Sbjct: 867 SLDAMARCAKS-KKGRVDASSDVGTDAKPDVGTDAKPDVGTDAKPDVGTDASNKPAASDS 925

Query: 950 VRFENEQRVLGFYFSGHP 967
               +E   LG Y S  P
Sbjct: 926 T-LYDEYLALGCYVSAWP 942


>gi|227496030|ref|ZP_03926341.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
 gi|226834423|gb|EEH66806.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434]
          Length = 1110

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 292/1116 (26%), Positives = 459/1116 (41%), Gaps = 155/1116 (13%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNN---------------ILDKIAADQQPAIAITDTNNLF 53
             S+  L  HS+YS L+GA    +                              TD + + 
Sbjct: 4    SSYAELHSHSAYSFLDGANEPEDLAAAAAELGLTALAL---------------TDHDGMP 48

Query: 54   SALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
              +  +Q   A G+  + G +L +                     + +L  + EGY+ L+
Sbjct: 49   GIVRHAQAGRALGLPTVHGTELTMSDG----------------AHLPVLARSPEGYRHLV 92

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEG--------LIMLTGGSSGPIDRAFFFN--- 162
              +S+  L    +Q     L  L +    G         ++LTG + GP+ RA       
Sbjct: 93   SAISQHNLQAGRRQEPAHRLEDLAQALRGGTGMAAPSSCLVLTGTARGPLRRALGDPARP 152

Query: 163  ---SSQVAEKRLLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNS 217
                +Q A+  L    +L G D + V +  + G  D      + +LA +H LP++AT   
Sbjct: 153  HTWDTQAADICLGRMVELLGADGVAVEITLNGGPTDAALTRMLTRLAASHRLPVLATGAV 212

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
                  D    DVL A    T +            +L++ +EM  +    P+A+  T E+
Sbjct: 213  RCARPADSRLADVLTATRLGTDLEGARGHLPAIGRWLRSGAEMARLHRRAPQAVGVTAEL 272

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
            A   +F L + AP LP               + LR     G  +R               
Sbjct: 273  AADLAFDLALVAPDLPAAQVPPG----HTPASWLRELTRQGALLRYG-----TREQDPHA 323

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             Q LD EL VI  + F GYFLIV   +++ +++ I    GRGS A S   YAL IT +D 
Sbjct: 324  WQVLDHELEVIESLGFPGYFLIVRSIVEFCEESGIL-CQGRGSAANSAVCYALGITAVDA 382

Query: 398  LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
            +R  +LFERFL+P R   PD D+D    RR+EVI++V  +YG  R AQ+    S + ++A
Sbjct: 383  VRHKMLFERFLSPGRAGYPDIDLDIEACRREEVIQHVYTRYGRHRAAQVANVISYRPRSA 442

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
            +RD  RAL  P    D   + I +  +     QA  D              +++L+++ +
Sbjct: 443  VRDAARALGYPAGLQDAWARSIEHGWSREQDGQARED-----------AVPEQVLDVADR 491

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            L  L RH   H+ G+V+  +P++++ P+         V Q++      AGL+KFD LGL 
Sbjct: 492  LLRLPRHLGVHSGGMVLAAQPVTEVCPVRWAAMEGRSVLQWDKDDCAAAGLVKFDLLGLG 551

Query: 578  TLTLLQ---------------------KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             LT L+                       +   AQ G    L  +P +D   Y LL    
Sbjct: 552  MLTALRLAFTSLGDRGEKVPDLTSRQGDGILRPAQVGRPWGLHTLPEEDPAVYRLLQAAD 611

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNRKNGKEKIVSI 674
            T+G+FQ+ES      L  ++P    DI+  V+L RPGPI       Y  R+ G+E+   +
Sbjct: 612  TIGVFQVESRAQMATLPRLRPRVFYDIVVEVALIRPGPIQGDAVNPYIRRRLGREEPDYL 671

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFI 733
            H L+ P L++T GV ++QEQ+MQIA   +G+S  EAD LR+AM  K+  E M+    R +
Sbjct: 672  HDLLRPALEKTLGVPLFQEQLMQIAVDAAGFSPVEADALRQAMGAKRSVERMEALHLRLV 731

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
             G  + GIS+  A  +F+ L  FAD+GF +SHA ++A + Y +AW+K   P +F A  + 
Sbjct: 732  EGMKERGISQGTAELVFDKLRAFADFGFPESHAFSFAYLVYASAWLKVRRPEDFYAGVLA 791

Query: 794  LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------------------- 831
             +       +    DAR+  +Q++   V+   V   V                       
Sbjct: 792  AQPMGFWSPQTLVADARRHGVQVLAADVSHSEVQASVETVRPGAPSQACVGGAGEEASTA 851

Query: 832  --------DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVL 882
                    D  +   LA IKG+G   A  I+        +  + D   RV   +L R+ L
Sbjct: 852  LTHLDTHRDLAVRLGLAPIKGIGRELAERIVTERQSHGAYRDVADLARRV---RLGRKHL 908

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK-------HENIFAHEKGTFS 935
            E+L  AGAL   G SR Q L S   +                        +     G+ +
Sbjct: 909  ETLAAAGALASLGVSRRQALWSAGVLADEHGRPHLGHRTGGDRTPWCQPPLPGTAVGSRA 968

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
                       ++  R   + R+ G     HPL   +  L + G+           G  +
Sbjct: 969  -----PDLPEMSAQERHVADLRLTGVSTETHPLAFLRTALAEDGVVEVVRVGQQGNGAQV 1023

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            R+A +V  +Q+  T  G+   ++   +         
Sbjct: 1024 RVAGVVTHRQRPYTAAGT--VFLNIEDETGLLNVIC 1057


>gi|308523775|gb|ADO33730.1| putative error-prone DNA polymerase [Deinococcus ficus]
          Length = 1069

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 270/1035 (26%), Positives = 438/1035 (42%), Gaps = 53/1035 (5%)

Query: 16   VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75
              S +S     +S   ++ + AA    A+ + D  +L  A+E    A   GI  ++G  L
Sbjct: 21   CQSYFSEGRSTVSPRRLVQRAAAAGFTAVGLADWCSLAGAVELHDVASELGISAVVGVTL 80

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
             +                     ++LL ++ EGY+ L ELV+ + L    + +  +  + 
Sbjct: 81   PVIF-------PAVGRQPSETFPMILLATSREGYETLCELVTLINL----QHNAGLPWAV 129

Query: 136  LQEI-GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR-GYD 193
            ++E+ G E L+ LTGG  G            +A + L   K +F   LYV L       +
Sbjct: 130  IEELRGQEHLVCLTGGRGGFPTLLGERKELALAARHLTALKGIFPMGLYVQLYHGEAPNE 189

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            R R   +  LA   ELP+VA         EDY   D L        V      R   D  
Sbjct: 190  RRRLEYLRGLARDLELPVVAAPEIRMADREDYPLLDALTCARLGIDVQTPHPERPRNDAL 249

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
                 E        P+   N   IA+ C + L       P          Q   E     
Sbjct: 250  SIETPEHWGQLLPFPDGTLNAARIAQVCRWDLLPERLHSPEPTLPPGMTPQAALEERALA 309

Query: 314  KAVAGLEVRLAQ---GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
             A       + +   G+           +RL  EL  +A +  +G+FL  A+   + K +
Sbjct: 310  AAAEKYNECVTEALKGSREGDVSLSQATERLQSELATVAELDMAGFFLTAAEVADYCKAH 369

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I    GRGS AGSV  Y L IT  DPL+ +LLFERFL+  R SMPD D D    RRD+V
Sbjct: 370  GILAA-GRGSAAGSVLCYVLGITLTDPLKHNLLFERFLHTGRTSMPDVDFDIASSRRDQV 428

Query: 431  IRYVQNKYGHERVA--QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            +R+V+ ++G        +    + +  +A++D+GRAL +P    DRL + +  D  H   
Sbjct: 429  LRWVEERWGMTGAGEAMVANRITYRLPSAVQDLGRALGLPPELRDRLSRALGRDFRHHRP 488

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA-STHAAGIVIGDRPLSQLVPMYR 547
             +    DS F E     P  + LL++ +++E  +    + H+ G+V+    L++  P+  
Sbjct: 489  HRVREADSIFCEVLGDAPIKEALLKLLERVEARFTRHLAPHSGGVVLSSASLTRYSPL-M 547

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
                 + +  F+   +E+ GLIK D LGL+ L  L+++ + + +   +        DD  
Sbjct: 548  RSSGGIRMLTFDKDDVERLGLIKLDLLGLRMLAALERAREEVLRLTGQWMPYGDLPDDPR 607

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRK 665
             +  +++  T+G+FQ+ES    Q    +QP  +E +   ++L RPGPI    +  Y  R 
Sbjct: 608  VWAEISSGDTMGLFQIESPAQVQMTARLQPKTMEQLAHQIALVRPGPIQSGTVHPYVRRA 667

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             G+E +      I  +L+ T G +++QEQ+++IA   +GY    AD  R  + K   E  
Sbjct: 668  RGEEPVPEQMEPIRSILRATHGTLMFQEQILRIAVQFAGYDWPRADRFRSRLSKVEDEAE 727

Query: 726  DKQKERFIS--GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
             +Q +       A   G     A  IF + A F  YGF +SHA A+A  SY +A+M+ ++
Sbjct: 728  LQQLKAEFVLGAAQTVGAFPEEAEEIFGMCAAFRGYGFAESHAHAFAQHSYASAYMRHYH 787

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAI 842
            P  F A  +T E   +       Q+ R+  +Q+ P  +N   + ++  +   I  SL  +
Sbjct: 788  PAAFFAGVLT-EAPGMWPAGTIAQECRRRKVQLAPVDINRSGLAWRAENLRSIRASLVTV 846

Query: 843  KGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG--YSRM 899
             G+    AR I++       F S+EDF  RVD   L +  LE+LV AGA D      +R 
Sbjct: 847  DGISEDAARMIVQERLVGGKFRSVEDFYDRVD---LPKDRLETLVKAGAFDRIDAQKNRR 903

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            +    L         V   R      +             + + S  +   +   +    
Sbjct: 904  EAYYVL-------HTVANTRKPGTRGLLHVSTD-------VPELSEMSEPEQLNLDLETK 949

Query: 960  GFYFSG-HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            G   SG H LD ++  LR +G +          G  +  A ++V++Q+  T KG    + 
Sbjct: 950  GLSESGAHLLDAHRARLRDLGCQA---LAGLRHGETVWAAGVIVARQRPPTAKG--FAFY 1004

Query: 1019 TFSEPAKEYEANFFP 1033
               +     +A   P
Sbjct: 1005 VLEDATARVQAIISP 1019


>gi|161523657|ref|YP_001578669.1| error-prone DNA polymerase [Burkholderia multivorans ATCC 17616]
 gi|189351575|ref|YP_001947203.1| error-prone DNA polymerase [Burkholderia multivorans ATCC 17616]
 gi|160341086|gb|ABX14172.1| DNA polymerase III, alpha subunit [Burkholderia multivorans ATCC
           17616]
 gi|189335597|dbj|BAG44667.1| DNA polymerase III alpha subunit [Burkholderia multivorans ATCC
           17616]
          Length = 1071

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 236/888 (26%), Positives = 390/888 (43%), Gaps = 56/888 (6%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P++  L   S++S L GA     ++ +        IAITD  +L  A      A AAG+ 
Sbjct: 9   PAYAELFCRSNFSFLHGASHAEELVARAVKLGYRGIAITDECSLAGAPRMHVAARAAGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIG   ++   +       G  P P    +VLL    EGY  L EL+S    +   K +
Sbjct: 69  LIIGSYFEVTPDE----APPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMAAPKGT 123

Query: 129 VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            ++    L     E   L  +    +  +    +   + V + ++  F+  FG+R  + L
Sbjct: 124 YQLTPRMLSRPPEEFAHLRGMPDCFAILVP--VYPVRADVLDAQVAWFRTTFGERARLGL 181

Query: 187 -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q  R  D  +  ++        + +VA  +            DV+ A+     V     
Sbjct: 182 VQLQRALDGPQRDEIRAAGARRGVRVVALGDVTMHKRSCKPLQDVMTAIRLGMPV----- 236

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD---D 302
              +   Y    +    + S    A   + +   +   IL      L     +  D    
Sbjct: 237 ---SECGYALAPNAEQHLRSRARIATLFSADEIAQTCAILDACHFELDTLRYEYPDEIVP 293

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                 + L  +  AG   R  +G        +   Q++ +EL +IA++ +  +FL V D
Sbjct: 294 PGHTPTSYLEQETRAGAAERYPKGV------PEKVEQQIRYELALIAKLSYEPFFLTVYD 347

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +++A+  NI    GRGS A S   Y L IT++DP + +LLFERF++ +R   PD D+DF
Sbjct: 348 IVKYARSQNIL-CQGRGSAANSAVCYCLGITEVDPEQSTLLFERFISENRGEPPDIDVDF 406

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              RR+EVI+++  KYG  R A      + + +  LR+ G+AL +    VDR+ K     
Sbjct: 407 EHQRREEVIQHIYEKYGKHRAAIAAAVSTYRPRGVLRETGKALGVDPMLVDRVAKGHRWF 466

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                 LQ             A P +    E++ +L    RH S H+ G VI    L++L
Sbjct: 467 DGSRDLLQQFEMV----GLDPATPLIRTWAELAARLLNFPRHLSQHSGGFVISRGKLTRL 522

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG------VKV 596
           VP+         V Q++   +E  GL+K D L L  L+ L ++ D +             
Sbjct: 523 VPVENAAMDGRRVIQWDKDDLEALGLLKVDVLALGMLSALHRAFDMITAWRGLQPDGKPF 582

Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
               IP  D +TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI 
Sbjct: 583 GFDHIPRHDDDTYDMICRADTVGVFQIESRAQMSMLPRLKPREYYDLVIQVSIVRPGPIQ 642

Query: 657 NIVVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
              V+   K  +        ++      +  +L+ T GV I+QEQVMQIA + +G++  E
Sbjct: 643 GGAVHPYLKRRRIVAGEEEGEVTYPSDALKAVLERTLGVPIFQEQVMQIAIVAAGFTPDE 702

Query: 710 ADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
           AD LRRAM     K ++ K  ++ ++G  + G ++  A  IFE +  F +YGF +SHAA+
Sbjct: 703 ADALRRAMAAWKRKGDLGKYHDQIVNGMLERGYTREFAEQIFEQIKGFGEYGFPESHAAS 762

Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
           +A ++Y ++W+K H P  F+AA +  +        +  QDAR+  + + P  V     + 
Sbjct: 763 FAKLAYASSWLKCHEPAIFVAALLNSQPMGFYAPAQLVQDARRHGVTVFPVDVTKSNWET 822

Query: 829 KVG----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            +           D  +   L+ ++G G   AR I  A A  PF++++
Sbjct: 823 SLEALPGAAPPEGDPAVRLGLSLVRGFGEAAARRIEAARAAGPFENVD 870


>gi|222153151|ref|YP_002562328.1| DNA polymerase III DnaE [Streptococcus uberis 0140J]
 gi|222113964|emb|CAR42236.1| DNA polymerase III alpha subunit [Streptococcus uberis 0140J]
          Length = 1034

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 279/1025 (27%), Positives = 467/1025 (45%), Gaps = 102/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L   + YS ++  + L +   K       +I I D +NL++A  F +     G+Q I
Sbjct: 2    FVQLDTKTVYSFMDSLIDLESYFSKAKELGYSSIGIMDKDNLYAAYHFIKGCERHGLQAI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++D  + D                   L+     GYQ L++L +++   +  +   R
Sbjct: 62   LGLEIDYHISDQFIPIF-------------LIAKNNLGYQNLLKLSTQIMSSENVQ---R 105

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                +L     +GL          +   +F +  ++A          F    Y+ +    
Sbjct: 106  HFKEYL-----DGL---------EVIIPYFKHMEEIA----------FPFEYYIGV---- 137

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             Y+                 L+      +  +ED +   VL A+  +  +++        
Sbjct: 138  -YEDTEFPH-------SHKKLIPLRTVRYFEDEDRQTLQVLHAIRDNVSLNETAIVEGDQ 189

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                  +   +               ++                             + +
Sbjct: 190  KFEDSQKISTIFETRFPGSIERLNKLVSGIHYQFDNQFKLPRFNREVP--------AKEQ 241

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L      GLE         +G    +Y  RL  EL +I+ M F  YFLIV D +++ +  
Sbjct: 242  LYALTKEGLEK--------RGLWQDNYISRLHHELTIISEMGFEDYFLIVWDLLRFGRSK 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ A+AL IT IDP++ +LLFERFLN +R SMPD DID     R E 
Sbjct: 294  GYYMGMGRGSAAGSLVAFALEITGIDPVKNNLLFERFLNNERFSMPDIDIDLPDIYRMEF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            +RYV+N+YG    AQI+TF +   K ALRDV +   +P  +   +  L            
Sbjct: 354  LRYVRNRYGTNHSAQIVTFSTFGPKQALRDVLKRFGVPEYE---ISHLTKKIGFKDSLHS 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
               ++  FR+   +     +  +I++++EG  R  S HAAGIV+ D  L+  +P+ +   
Sbjct: 411  VYDNNISFRQTIASRLEYQKAFDIAKRIEGNPRQTSIHAAGIVMSDSNLTDFIPLKQG-- 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             ++ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+     + +  I  +D +T 
Sbjct: 469  DEMMITQYDAPSVEANGLLKMDFLGLRNLTFVQKMKEKVAKDFGKNIIIEEIDLEDPKTL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E SG    L+ ++P   E+I+A  SL RPG  D    +  R+NGKE
Sbjct: 529  ELFAKGDTKGIFQFEQSGAISLLKRIKPVKFEEIVATTSLNRPGASDYTSNFIKRRNGKE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I  I P+I P+L+ T G+++YQEQVMQIAQ+ +G+SL +AD+LRRAM KK   EM K +
Sbjct: 589  TIDLIDPIIAPILEPTYGIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSKKKISEMKKLE 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              F+ GA   G S+  A  +F  + KFA YGFN+SHA AY+ +++Q A+ K HYP  F  
Sbjct: 649  SEFLEGARALGRSEETAKLLFNRMEKFAGYGFNRSHAYAYSALAFQLAYFKVHYPSVFFD 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              M            +  DA      ++P S+N+   + KV    I   +  IK +    
Sbjct: 709  VIMN------YSTSDYISDALDSEFNVVPLSINSIPFNDKVEGRTILMGMKNIKHLPRDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+EA    PF S+E+F +++  K   + +LE+L+  G  D F  +R ++LQ+ + + 
Sbjct: 763  AYWIIEAR---PFTSIENFLTQLPDKYQKKEILEALISVGLFDVFEKNRKKVLQNYEGLL 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             + + +         ++FA     ++      +    +SS ++  E+  +G   S HPL 
Sbjct: 820  VFVKEL--------GSLFADSSFNWT------ECEDFSSSEKYRMEEEYIGIGLSQHPLL 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYE 1028
                 + +   + +       +  ++ L   +   +  +T+  G ++ ++T ++  K+ +
Sbjct: 866  ----EIAEKTSRDFTPISKLYKDTDVTLLVQIEKVRVIRTKSNGQQMAFLTVTDTKKKCD 921

Query: 1029 ANFFP 1033
               FP
Sbjct: 922  VTVFP 926


>gi|251770815|gb|EES51404.1| DNA-directed DNA polymerase [Leptospirillum ferrodiazotrophum]
          Length = 1109

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 286/977 (29%), Positives = 467/977 (47%), Gaps = 90/977 (9%)

Query: 5   LEK-SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS---ALEFSQ 60
           + + S  F HL  H+ YS+L+G   +  ++++         AITD  NLF+    L   +
Sbjct: 1   MPEVSQKFSHLHTHTQYSILDGMNKIPKLVEQSVESGIGGFAITDHGNLFALPEVLREQK 60

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            A   G++  +GC+  +            K        +  +     G + L++L ++ Y
Sbjct: 61  TANERGVKIAMGCEFYVTDD------RLQKNKESDTYHLTAIAKNNVGLESLMKLSTKAY 114

Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
             +      RI L  L E    GLI+L+G   G + +A    +   A   +  +  +FGD
Sbjct: 115 T-EGFYSHPRIDLDLLSE-HKNGLIVLSGCLGGQVAQALKDGNKAKAMDLVGAYHDIFGD 172

Query: 181 RLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             ++ +      ++    + + +++    +  V T +  +  +E Y AHD  +A+   ++
Sbjct: 173 NYFLEVMPLEIREQIDVNAAISEISKRTGIETVTTCDCHYQKKEHYAAHDTWLAIQTGSL 232

Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
           +S  DR R + D       E V   S         ++ +      + +         +  
Sbjct: 233 LSDPDRFRFSTDRAYFQTPEEVLENS-----KGAGLDESSMLRTSMIMERISGYEIDKAL 287

Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              + +    +LR  A +GL+            +  DYR+RL++EL+VI ++ F  YFL+
Sbjct: 288 KMPVIENAHEKLREMAFSGLQK-------KGLLNRPDYRERLEYELDVIGKLGFDSYFLL 340

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V   IQ AK N  P GPGRGS AGS+  + L ITD+DP++  L+FERFLNP R+S PD D
Sbjct: 341 VQKIIQIAKNNGTPTGPGRGSAAGSLVVWVLGITDLDPIKHGLIFERFLNPARVSPPDID 400

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           +D     R  VIR +  +YG  RVA I+T G    K  L+DV R   + +++ +     +
Sbjct: 401 LDIGTKGRGGVIRSIVEEYGTARVATIMTLGLALDKMVLKDVMRTEGISFAEANVATTGM 460

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
                               +   A P+   +LE ++ L G  R+  THAAGIVI   PL
Sbjct: 461 KT----------------LDDFSPATPTEHEVLERAKVLNGTVRNIGTHAAGIVISPEPL 504

Query: 540 SQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
              VP+        + +   Q +MK +++ G IK D LGLK L +L+       +R    
Sbjct: 505 YGKVPLMSSKVAEENGILQLQLDMKAVDEWGYIKVDVLGLKELDILKDLS----KRTGAD 560

Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESS-GMRQALEGMQPDCIEDIIALVSLYRPGPI 655
                   D +T  +++   T G+FQL +S GM++ L  M+ D   D+ A +SL+RPGP+
Sbjct: 561 PKQEEFMHDKDTLEMISVGETTGVFQLGTSEGMKRMLRDMKCDSFNDVCAALSLFRPGPL 620

Query: 656 DNIVVYNNRKNGK-----EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
           ++ +V    +N +     E I S++P  D +L ET GV IYQEQ+M++ ++L+G+ + EA
Sbjct: 621 ESGIVAQYIRNKELSKNGEPIPSLNPRTDTLLAETYGVPIYQEQIMEMGKILAGFDMKEA 680

Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
           D+LR+AMGKK  EEM K KE+++SG  KNGIS+  A+ +FE +  F+ YGFNKSH+AAYA
Sbjct: 681 DLLRKAMGKKKPEEMAKMKEKWVSGCLKNGISEKEALELFEKVEHFSGYGFNKSHSAAYA 740

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT------- 823
           + S + AW K HYP  + AA ++ E D  E      + A++  I ++PP +         
Sbjct: 741 ITSMKMAWYKCHYPAHYWAAKISHENDV-ESRGVMAESAKREGIVVVPPRICVEENTLFK 799

Query: 824 ---------------PCVDFKVGDNRIYYSLAAIKGVGTTTARHI-MEASADKPFDSLED 867
                            V    G++RI   +  +KGV    A  + +E + + PF S++D
Sbjct: 800 KHTGNNQETSHYPDLCAVIDHNGEDRIVLGIETLKGVSEGVAEALSIETNLEGPFKSMQD 859

Query: 868 FCSRVDSKK------LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV------ 915
              R+  K+      LN+R + +L   G  D     R  +L  +++  K    +      
Sbjct: 860 VYDRLVVKREDRPPILNKRSMVALTAVGFFDPIYKDRKAVLSWIESKYKEPGSIPCLEPP 919

Query: 916 EKNRTNKHENIFAHEKG 932
           ++ RT K   IF  ++ 
Sbjct: 920 KRKRTKKQAEIFTSQEE 936


>gi|195978007|ref|YP_002123251.1| DNA polymerase III DnaE [Streptococcus equi subsp. zooepidemicus
            MGCS10565]
 gi|195974712|gb|ACG62238.1| DNA polymerase III alpha subunit DnaE [Streptococcus equi subsp.
            zooepidemicus MGCS10565]
          Length = 1046

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 284/1025 (27%), Positives = 468/1025 (45%), Gaps = 100/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L++   +       AI I D +NL+ A  F +     G+QPI
Sbjct: 12   FAQLDTKTVYSFMDSLIDLDHYFKQAKRLGYQAIGIMDQDNLYGAYHFIKGCQRHGLQPI 71

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ I +++                   L+     GYQ+L++L +        K S  
Sbjct: 72   LGLEVAITVKEQTLTLK-------------LVAKNDTGYQQLLKLSTE-------KMSGE 111

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L  L +   EG+ ++        D                          ++ +    
Sbjct: 112  LDLDTLVQ-HLEGIAVIVPFRQSLSDLGL-------------------PFDYFIGI---- 147

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D    S + ++       L+      +    + E   +L A+  +  ++         
Sbjct: 148  --DEA--SDLSKIGSAE--RLIPLRTVRYFDNAETETLQMLHAIRDNVGLADTALVAKD- 200

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                  +          PEAL N  E+    ++       +          +  K  + E
Sbjct: 201  QFLAPCQEVTAIFQEKCPEALLNLAELTASIAYHFDTDLKLPR-------FNRDKPAKEE 253

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR    +GL  R            + Y+ RL  EL +I+ M F  YFLIV D +++ +  
Sbjct: 254  LRELTESGLRERQ--------LWKEPYQSRLAEELAIISDMGFDDYFLIVWDLLRFGRSR 305

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ AY+L IT IDP++ +LLFERFLN +R SMPD DID     R E 
Sbjct: 306  GYYMGMGRGSAAGSLVAYSLRITGIDPVKNNLLFERFLNKERYSMPDIDIDLPDIYRSEF 365

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV+++YG E  AQI+TF +   K A+RDV +   +P  +   L  L            
Sbjct: 366  LHYVRDRYGSEHSAQIVTFSTFGPKQAIRDVFKRFGVPEYE---LASLTKKIGFKDTLST 422

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+   +   + +  EI++ +EG  R  S HAAGIV+ D PL+  +P+ +   
Sbjct: 423  VYEKNIAFRQTINSRLELQKAFEIAKCIEGNPRQTSIHAAGIVMSDDPLTNHIPLKKG-- 480

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETY 609
             D+ VTQ++   +E  GL+K DFLGL+ LTL+QK  + +       +D+  I  +D ET 
Sbjct: 481  EDMMVTQYDANAVEANGLLKMDFLGLRNLTLVQKMQEKVVNDYGLSIDIEAINLEDPETI 540

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E  G    L+ ++P   E+I+A  SL RPG  D    +  R+ G+E
Sbjct: 541  ALFARGDTKGIFQFEQHGAISLLKRIKPTSFEEIVATTSLNRPGASDYTQNFIKRRQGQE 600

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK   EM + +
Sbjct: 601  NIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLVEMQRMQ 660

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            E F++GA   G S+  A  +F  + KFA YGFN+SHA AYA +++Q A+ K HYP  F  
Sbjct: 661  EDFLTGARALGRSEETARLLFARMEKFAGYGFNRSHAFAYAALAFQLAYFKAHYPEVFFD 720

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              M            +  DA  F  +    ++NT   + K+  ++IY  L  IKG+    
Sbjct: 721  VMMN------YSSSDYITDALDFGFEAAQVTINTIPFNDKIERHKIYMGLKNIKGLPREF 774

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            +  I+E   ++PF S+E F   +  K      LE L+  G  D F  +R +++ +L+ + 
Sbjct: 775  SYWIIE---NRPFTSVESFLCSIPEKYQKTSFLEPLIKIGLFDGFEKNRQKIINNLEGLL 831

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             +   +         ++FA    ++       +    +++ ++  EQ +LG   S HPL 
Sbjct: 832  TFVNEL--------GSLFADSSFSW------VETEDYSAAEKYYFEQDLLGVGMSKHPLL 877

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYE 1028
                   +            ++     L   + + +  +T+  G ++ +++ ++  K+ +
Sbjct: 878  AV----AEKSTVAVTPITKLVKDTEATLLVQIDAIRVIRTKSSGQQMAFLSVTDTKKKLD 933

Query: 1029 ANFFP 1033
               FP
Sbjct: 934  VTLFP 938


>gi|315613028|ref|ZP_07887939.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis ATCC 49296]
 gi|315315138|gb|EFU63179.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis ATCC 49296]
          Length = 1043

 Score =  455 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 288/1022 (28%), Positives = 472/1022 (46%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +AI D +NL+ A  F +      IQP++
Sbjct: 13   TQLDTKTVYSFMESVVSIEKYVQMAKEYGYSHLAIMDVDNLYGAYHFLEATRKHCIQPLV 72

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ +                    S+  L  + +GYQ L++L +        K + R 
Sbjct: 73   GLEMTL-------------VKDEENLSLRFLALSTKGYQELMKLSTL-------KMTGRK 112

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S       E + ++    +G +++                     G   ++ +     
Sbjct: 113  NWSDFTS-HLEDVAIIVPYFNG-VEQLDL------------------GVDYFIGVSPDTP 152

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             + +              P++         +ED +   +L AV  +  +   D       
Sbjct: 153  QEVFTR------------PILPLYQVNSFEKEDLQVLQILSAVKDNVSLRDVDLHSQ-QG 199

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +L          +  P+AL N   +    S+ +     +          + ++    EL
Sbjct: 200  IFLPASDLEARFKNRFPQALANLQGLIENVSYQIDTSLKLPR-------FNPERPAVEEL 252

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G           KG  +  Y +RL+ EL VI  M F  YFL+V D +++ +   
Sbjct: 253  RERAEQG--------LSDKGLASAIYHERLNEELAVIHDMGFDDYFLVVWDLLRFGRSQG 304

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AY+L IT IDP+  +L+FERFLN +R +MPD DID     R E I
Sbjct: 305  YYMGMGRGSAVGSLVAYSLDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDLYRPEFI 364

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG + VAQI+T+ +  AK A+RDV +   +P  ++  + K I           A
Sbjct: 365  RYVRDRYGSQHVAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITKKISF---RDTLTTA 421

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI++K+EG  R  S HAAG+V+ D+ L+  +P+      
Sbjct: 422  YEKNLQFRQVINSKMEYQKAFEIARKIEGYPRQTSIHAAGVVMSDQDLTDYIPLKYG--E 479

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + LA+       +  I  +D ET  
Sbjct: 480  DMLITQYDAHGVEANGLLKMDFLGLRNLTFVQKMQELLAESEGVHLKIEEIDLEDKETLA 539

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E  G  + L+ +QP   E+++A  SL RPG  D I  +  RK+GKEK
Sbjct: 540  LFAAGNTKGIFQFEQPGAIRLLKRVQPQVFEEVVATTSLNRPGASDYIDNFVARKHGKEK 599

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK  +EM   KE
Sbjct: 600  VTVLDPALEDILSSTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNAKEMHLMKE 659

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI+GA K G ++  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 660  DFITGAMKLGHTEEKANQVFAVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFFQV 719

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA Q   ++ P ++N+     K+   +I+  L AIKG+    +
Sbjct: 720  MLN------YSSSDYIVDALQMGFEVAPLAINSIPYHDKIAQKKIHLGLKAIKGMPRDLS 773

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++PF S+EDF +R+        +L  LV  G  D F  +R ++L +L N+  
Sbjct: 774  YWIIE---NRPFSSIEDFVTRLPKNYKKLSLLTPLVELGLFDEFDKNRQKILVNLPNLFV 830

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +          +FA    ++++            + +F  EQ ++G   S HPL  
Sbjct: 831  FVEEL--------GGLFADTNYSWTEA------DDFTEAEKFYKEQELIGVGISPHPLQ- 875

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                L K  +           G    L   V   +  +T+KG  + ++   +     +  
Sbjct: 876  ---TLAKQALYPTTPITNLTEGAQATLLVEVQKIKVIRTKKGESMAFLQVHDSKSRMDVT 932

Query: 1031 FF 1032
             F
Sbjct: 933  VF 934


>gi|2073511|emb|CAA72479.1| DNA polymerase III alpha subunit [Rickettsia prowazekii]
          Length = 780

 Score =  455 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 340/795 (42%), Positives = 483/795 (60%), Gaps = 36/795 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P F+HL+  SSYS LE AL++  +++     + PA+ ++D  NLF +LEFS  A    +Q
Sbjct: 3   PEFIHLRTQSSYSFLESALTIEKVVELALLHKMPALCLSDRGNLFGSLEFSLYAVKKKLQ 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PI G  L+I    N                I+L+     GY+ L++L S  +  +  K  
Sbjct: 63  PIHGVILNIQYDIN------------AFAQILLIAKDETGYKNLLKLSSLTFTKNDRKIC 110

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             I    L +   EG+I L   + G + +       + A       + + GDR Y  + R
Sbjct: 111 EHIGFEDLIKY-QEGVIALCCYTDGIVGKCLLARKQEQAILFARRLQAILGDRFYFEIMR 169

Query: 189 HRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H   +    E+  +Q+A    +P+VATN  LF  +  + AHDVL+ ++        DR  
Sbjct: 170 HDLPEEQFIENSYIQIASELSIPIVATNKVLFSEKSMHYAHDVLLCISEGVTKEYPDRKT 229

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           V+ + Y K+ +EM  +FSDLP A++NT+ +  RC F     A      +          E
Sbjct: 230 VSENCYFKSPAEMRKLFSDLPNAIQNTINLRERCYF-----AAHPNPPMLPNFSTQDISE 284

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQ-------DYRQRLDFELNVIARMKFSGYFLIV 360
              +R  A  GL  RL     A+    +       +Y  RL++EL++I  M F+GYFLIV
Sbjct: 285 TYLIRKYATEGLLARLVTKFKAENISLEHQEKLKTEYFTRLNYELDIICNMNFAGYFLIV 344

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
           +DFI+W+KK  I VGPGRGSGAGSV A++L +TD+DP++F LLFERFLNP+R+SMPDFDI
Sbjct: 345 SDFIKWSKKQGILVGPGRGSGAGSVVAWSLLVTDLDPIKFGLLFERFLNPERISMPDFDI 404

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           DFCQ+RR+EVI YV++KYG  RV QIITFG +QAKA ++DV R L +PY   D L +L+P
Sbjct: 405 DFCQERREEVINYVRSKYGPNRVGQIITFGKMQAKAVIKDVARVLSLPYKLADYLTELVP 464

Query: 481 NDPAHPVS-LQAIADDSRFREARLAD---------PSVDRLLEISQKLEGLYRHASTHAA 530
               +PVS  QAI +      A   +           +  +L+ S  LEGL+RH+STHAA
Sbjct: 465 FSAINPVSLEQAIREVPELANAAKGNGLYNLEGDAELIKLVLDTSLILEGLHRHSSTHAA 524

Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
           GIVI    L  +VP+Y+D  +D+ +  ++MK+ E AGLIKFDFLGL+TLT++      L 
Sbjct: 525 GIVIAGTDLVDIVPVYKDANADMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITNCKKLLK 584

Query: 591 QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
           ++G+K+D   + FDD +TY +L     +G+FQ ES GM+ AL  ++PD I D+IAL +LY
Sbjct: 585 EQGIKIDFDDMTFDDKKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALY 644

Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
           RPGP++NI  Y   K+  ++   +H L++P+L+ET GV+IYQEQV +IAQ+L+GY+L  A
Sbjct: 645 RPGPMENIPTYIACKHKLQQPDYLHKLLEPILEETYGVVIYQEQVQRIAQVLAGYTLGAA 704

Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
           D+LRRAMGKKIK+EM++Q+E F+ GA  N IS + A +IF  +AKFA YGFNK+HAAAY 
Sbjct: 705 DLLRRAMGKKIKKEMEEQEEIFVKGAIANNISPSQAKSIFSTVAKFAGYGFNKAHAAAYG 764

Query: 771 VISYQTAWMKTHYPV 785
           VISYQTA++K +YP 
Sbjct: 765 VISYQTAYLKANYPA 779


>gi|171779317|ref|ZP_02920281.1| hypothetical protein STRINF_01162 [Streptococcus infantarius subsp.
            infantarius ATCC BAA-102]
 gi|171281934|gb|EDT47365.1| hypothetical protein STRINF_01162 [Streptococcus infantarius subsp.
            infantarius ATCC BAA-102]
          Length = 1035

 Score =  455 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 278/1028 (27%), Positives = 479/1028 (46%), Gaps = 107/1028 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   + +        I I D +NL++A  F  KA + G++P+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLEGYVKEAKVLGYQTIGIMDKDNLYAAFHFITKAKSEGLRPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L +++Q+NL +            S+ L+     GY+ L+++ SR            
Sbjct: 62   LGLELTLNLQENLSL------------SVYLIARDTTGYKNLMKVSSRQMTSG------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I +  L++  + GL+++     G    +                        Y+ +  H 
Sbjct: 103  IQVEDLKDYLS-GLVVIIPDFDGLESLSL-------------------PFEYYIGVNVHS 142

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS---TVVSQKDRPR 247
                            ++ PL+  +   + +  + E   +L A+  +      S   + +
Sbjct: 143  EE------------RDYDKPLIPLHTVRYFNTNEVETLHMLHAIRDNISLKDASAAPQGQ 190

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                  +  ++        L    +   EI    +  L++      +             
Sbjct: 191  QLMACDILTQAFEQKFPQALENLEKLVAEIHYDFNSELKLPRFNRQKP-----------A 239

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + EL     AGL+        AK     +Y++RL  EL+VI +M F  YFLIV D +++ 
Sbjct: 240  QEELIELTEAGLK--------AKNLWLPEYQERLAKELSVIHKMGFDDYFLIVWDLLRFG 291

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +     +G GRGS AGS+ +YAL IT IDP++ +LLFERFLN +R SMPD DID     R
Sbjct: 292  RSRGYYMGMGRGSAAGSLVSYALDITGIDPVKNNLLFERFLNEERYSMPDIDIDLPDVYR 351

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             E + YV+N+YG    AQI+TF +  AK A+RDV +    P  ++  + K I        
Sbjct: 352  SEFLHYVRNRYGSLHSAQIVTFSTFGAKQAIRDVFKRFGAPEHELTNITKKISF---KDN 408

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                   +  FR+   A     +   I++++EG  R  S HAAG+V+ D  L++ +P+  
Sbjct: 409  LTSVYEKNLAFRQIINAKIEYQKAFAIAKRIEGNPRQTSIHAAGVVMSDDNLTEHIPL-- 466

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  + +A+   + +D+  I  +D 
Sbjct: 467  KAGEDMMITQYDAAAVEANGLLKMDFLGLRNLTFVQRMQEKVAKDYGINIDVKSIDLEDQ 526

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L     T GIFQ E +G    L+ ++P   EDI+A  SL RPG  D    +  R+ 
Sbjct: 527  QTLALFAAGKTKGIFQFEQAGAINLLKRIKPQKFEDIVATTSLNRPGASDYTENFIRRRF 586

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+E I  I PL+  +L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  E+M 
Sbjct: 587  GQEAIDLIDPLVAKILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKKAEDMQ 646

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +  F+ GA   G     A ++F  +AKFA YGFN+SHA AY+ +++Q A+ K HYP  
Sbjct: 647  KMESEFLKGAQALGRPLETAKDLFSRMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 706

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F    +            +  DA +   +I    +NT   + K+ D +IY  L  ++ + 
Sbjct: 707  FYDVMLN------YSSADYITDAMESEFRIKKIDINTVPYNDKIADGQIYLGLKNLRALP 760

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                  I++     PF S+EDF +++      + ++  LV  GA D F  +R +++++L+
Sbjct: 761  RDLCYWIIDHR---PFSSIEDFLTKLPENYQKKELITPLVEVGAFDNFEKNRRKIIENLE 817

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             +  +   +         ++FA     +       +     ++ ++  EQ +LG   S H
Sbjct: 818  PLFIFVNEL--------GSLFAENSYNWI------EVEDFPNTEKYRQEQGLLGVGISPH 863

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAK 1025
            PL      + K     +             +   +   +  +T+ KG ++ ++  ++  K
Sbjct: 864  PLL----EIAKNSSVAFTALADLHENTEATILVELSQIRVIRTKTKGEQMAFLNVTDTQK 919

Query: 1026 EYEANFFP 1033
            +++   FP
Sbjct: 920  KFDVTLFP 927


>gi|322392240|ref|ZP_08065701.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus peroris
            ATCC 700780]
 gi|321144775|gb|EFX40175.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus peroris
            ATCC 700780]
          Length = 1033

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 301/1022 (29%), Positives = 477/1022 (46%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +         ++ I D +NL+ A  F ++    GIQP++
Sbjct: 3    AQLDTKTVYSFMESMISIKRYVSLGKEYGYSSLGIMDEDNLYGAYYFIKECQKQGIQPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ +  +D                 + LL  +  GYQ L++L +      +       
Sbjct: 63   GLEMTVHHKDEWLN-------------LRLLALSNRGYQNLMKLSTLKMTGKKE------ 103

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              +       E + ++    SG  D                      G   Y+ +     
Sbjct: 104  -WTDFSSYL-EDICVIVPYYSGIADLDL-------------------GYDYYIGVYPD-- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       L      P++          ED EA  +L A+  +  + + D       
Sbjct: 141  ----------TLQSNFSQPILPLYRVNSFEPEDLEALQMLKAIKENVTLREVDVQSQQGL 190

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
                 R          P+ALEN   + ++ S+ +     +          + ++    EL
Sbjct: 191  LLPVER-LEQPFLEKFPQALENLERVTKKTSYEIDSSLKLPR-------FNPERPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A+ GL+         KG   QDY+ RL+ EL+VI  M F  YFL+V D +++ +   
Sbjct: 243  RERAIQGLKQ--------KGLWNQDYQARLEDELSVIHEMGFDDYFLVVWDLLRFGRSQG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP+  +L+FERFLN +R +MPD DID     R E I
Sbjct: 295  YYMGMGRGSAVGSLVAYALDITGIDPVAKNLIFERFLNRERYTMPDIDIDIPDIYRPEFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I           A
Sbjct: 355  RYVRDRYGSIHAAQIVTYSTFGAKQAIRDVFKRYGVPEYELTAITKKIGF---KDTLTTA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  FR+         +  EI++K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLGFRQLIQGKIEYQKAFEIAKKIEGYPRQTSIHAAGVVISDKNLTDYIPLKYG--E 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT  QK  + L +       +  I  +D ET  
Sbjct: 470  DMLITQYDAHGVEGNGLLKMDFLGLRNLTFAQKMQELLFETQGIPLRIEDIDLEDKETLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E  G  + L+ ++P+  ED++A  SL RPG  D I  +  RK+GKEK
Sbjct: 530  LFAAGKTKGIFQFEQPGAIRLLKRVKPESFEDVVATTSLNRPGASDYIDNFVARKHGKEK 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK   EM + +E
Sbjct: 590  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRYAGFSLGKADILRRAMGKKNAAEMHRMEE 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI GA +NG SK  A  +F ++ KFA YGFN+SHA AYA +++Q A+ KTHYP  F   
Sbjct: 650  SFIQGALENGHSKEQAQEVFAVMEKFAGYGFNRSHAYAYAALAFQLAYFKTHYPAIFYQV 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++ P S+NT     K+ D  +Y  L +IKG+    +
Sbjct: 710  MLNYASG------DYILDALEMGFKLTPFSINTVPYQDKLTDKTVYLGLKSIKGMSRDFS 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++PF S+EDF +R+        +L  LV  G  D F  +R ++L +L  +  
Sbjct: 764  YWIIE---NRPFSSVEDFITRLPKNYQKLSLLTPLVEVGLFDGFDKNRQKILANLPTLFI 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            +   +         ++FA    +++D          ++  +F+ EQ  LG   S HPL  
Sbjct: 821  FVDEL--------GSLFADSSYSWTDT------EDFSNIEKFKKEQEWLGVGISQHPLL- 865

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
               IL K  +           G    +   + S +  +T+KG  + ++  S+     E  
Sbjct: 866  ---ILAKNPLYPIVSLSELSEGQTATVLVEIQSIRVIRTKKGENMAFLKVSDSKTNLEVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  VF 924


>gi|197116897|ref|YP_002137324.1| DNA polymerase III subunit alpha [Geobacter bemidjiensis Bem]
 gi|197086257|gb|ACH37528.1| DNA polymerase III, alpha subunit [Geobacter bemidjiensis Bem]
          Length = 1029

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 273/1073 (25%), Positives = 447/1073 (41%), Gaps = 136/1073 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL  HSS S   G  S   +    A+     +AITD N L+    F   A  AGI PI
Sbjct: 2    FIHLHAHSSLSPNWGVHSPETLCSHAASLGFKTLAITDRNGLYGVPRFLDAAREAGISPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +  +   +                  VLL    EGY  +  L+S ++          
Sbjct: 62   IGTEA-VTPDNRA----------------VLLACNEEGYANISRLISDLHCQKNFDLIP- 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                 L E    G+I+L+                    K L   K+   + L+V L    
Sbjct: 104  ----ALSEYRR-GIIVLS-----------------DDRKLLAALKRKSDEGLFVELSPGH 141

Query: 191  GYDRYRESQVVQLAYTHELPLVATN-------------------NSLFLSEED------- 224
                      + LA    LP VAT+                      F   E        
Sbjct: 142  SM-----HNALTLARDLRLPPVATSRAVLRAPRYGGQAPPSDALTPTFSQRERGNGPNAL 196

Query: 225  -------YEAHDVLMAVAHSTVVSQK-DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
                   +  H VL A+  +T +S+            L    +M   F   PEAL+NT+ 
Sbjct: 197  AECRLDDFHLHRVLRAIHLNTKLSRLTPEMTAAESDALYPPDKMAEFFPHCPEALQNTIR 256

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
            IA  C       +           +   +     L  +A  G            G  +  
Sbjct: 257  IASLCKTDWNFSST----IFPAFRELGTEAAFETLLERARQGAIW-------RYGSISDR 305

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
             + RLD EL++I    FS YFL+V +  + +++       GRGS A S+ AY L IT +D
Sbjct: 306  VQARLDKELSIIRDKGFSHYFLVVEELTKQSERT-----CGRGSAAASLVAYCLGITHVD 360

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            P+R +L FERFLN  R   PD D+DF  D RD ++ +   +YG  R A +      + ++
Sbjct: 361  PIRHNLFFERFLNEGRSDPPDIDVDFPWDERDAILDFAFARYGARRAAMVANQVGFKGRS 420

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            ALR+V +   +P  ++  + + I        S  A++    F+   L+      ++  ++
Sbjct: 421  ALREVAKVYGLPDYEIKEMTERISGFWRAEQSAAAMSGHPLFKGESLSSD-WQEIMSTAR 479

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            +L G  RH S H  G+VI    + + VP+       LP+ Q+     E AGL+K D LG 
Sbjct: 480  RLNGQLRHLSLHCGGLVIVPDEIRKYVPVE-ISHKGLPLIQWEKDQTEDAGLVKIDILGN 538

Query: 577  KTLTLLQKSLDFLAQRG--VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            ++L +++ ++  + ++        +  P +D  T  LL    T+G F LES  +R  L  
Sbjct: 539  RSLAVIRDAMAAVKEQKGVEIDYATWRPLEDERTQSLLRRGLTIGCFYLESPSVRLLLRK 598

Query: 635  ----------MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
                       + D  E ++   S+ RP     I  Y  R  GK     +HPL++ +L E
Sbjct: 599  IWSSTAPPETFRYDLFEVLVQASSIIRPAANSFIQEYVARLQGK-PWSHLHPLLESVLGE 657

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM-DKQKERFISGASKNGISK 743
            T G+ IYQEQ+ QIA  L+G+S SE D LR+ + KK +E+     + +F++G ++ G+ +
Sbjct: 658  TLGIAIYQEQITQIAMELAGFSASEGDQLRKVITKKHREKRLADFRNKFMAGGAERGVPE 717

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             + + I++ +  FA Y F K H+A+YA++S + A+MK H+P +F+AA ++ +        
Sbjct: 718  KVLLGIWDQILSFAGYSFCKPHSASYALLSGKAAYMKAHHPAQFIAAVISNQ-GGYYSPF 776

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPF 862
             +  + R+  + I+PP +N     +   +  +   L  I G+    A  ++ E      F
Sbjct: 777  AYISEGRRLGLAILPPDINESEYHYTGKEKTLRVGLMQIDGLTRDGADRLLKERRERGAF 836

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS--RMQLLQSLDNIQKYAQWVEKNRT 920
             S ++F  R    +L R   E L+ AG  D       R  LL  L + Q+ A  +     
Sbjct: 837  ASFKEFLRRA---RLQRADAERLIKAGCFDALEGEEKRPTLLWELLHFQQQATAL----- 888

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                 +F         K  L      ++ +    E   LGF  S HPL +YK   ++   
Sbjct: 889  -----LF-------EQKTELPHPPPYDAQLVLRQEVEALGFLVSRHPLALYKEQWQRHRP 936

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                E +    G  + +    ++ +  + + G  + +++F +    ++A FFP
Sbjct: 937  IKASELI-KHTGKWVTMVGWWITTKTVEDKHGRPMEFISFEDVTAIFDATFFP 988


>gi|315222678|ref|ZP_07864567.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211]
 gi|315188364|gb|EFU22090.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211]
          Length = 1033

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 276/1023 (26%), Positives = 478/1023 (46%), Gaps = 101/1023 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + Y+ ++  +S+   ++         + I D +NL+    F + A   GIQP++
Sbjct: 3    AQLDTKTVYTFMDSLISIKKYVETAKNLGYQTLGIMDIDNLYGVYHFMETAIEQGIQPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ +D                    +  L   ++GY+ L++L +   +          
Sbjct: 63   GVEMTLDYAGLPLN-------------LRFLALDSQGYRNLMKLSTLKMIRKSK------ 103

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                 Q +  EG+ ++     G    A                        Y+ +     
Sbjct: 104  -WEEFQHLL-EGIAVIVPVFEGI--EALDLGRE-----------------FYIGVFPDTP 142

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
               +  + +                  +    D E   +L A+  ++ +  +       D
Sbjct: 143  KQAFPHATL------------PLQTVRYFDTGDLETLQMLCAIRENSSLR-EVGNLPNHD 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            + L       S   + PE+L+N  ++     + +     +          + ++    EL
Sbjct: 190  YLLSPEQFTQSFQENYPESLDNLKQLVAGIHYEINTELKLPR-------FNPERPAIEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            + +A AGLE +     +        Y++RL  EL+VI +M F  YFLIV D +++ +   
Sbjct: 243  QERAEAGLEKKRLNSLV--------YKERLQQELSVIHQMGFDDYFLIVWDLLRFGRSQG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP+  +LLFERFLN +R +MPD DID     R E I
Sbjct: 295  YYMGMGRGSAVGSLVAYALEITGIDPVEKNLLFERFLNVERYTMPDIDIDIPDVYRPEFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + + I           A
Sbjct: 355  RYVRDRYGTMHAAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITRKISFRDNLT---SA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  FR+   +     +  EI++++EG  R  S HAAG+V+ D  L+  +P+      
Sbjct: 412  YEKNMSFRQIINSKLEYQKAFEIAKRIEGNPRQTSIHAAGVVMSDNDLTDHIPLKYG--E 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +   ++    +D++ I  +D  T  
Sbjct: 470  DMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEAALEKYGVAIDIAKINLEDTATLQ 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L +   T GIFQ E +G    L+ +QP   E+++A  SL RPG  D I  +  RK+G+EK
Sbjct: 530  LFSAGRTKGIFQFEQAGAINLLKRVQPTQFEEVVATTSLNRPGASDYIDNFVRRKHGQEK 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +   ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM K + 
Sbjct: 590  VEILDSSLEDILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNVVEMHKMEA 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++GA + G S+T A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F   
Sbjct: 650  EFVTGALELGHSETKAKEVFAVMEKFAGYGFNRSHAYAYSALAFQLAYFKAHYPDIFFDI 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +F+ Q+   ++N      K  D +IY  L  IKG+    A
Sbjct: 710  MLN------YSSSDYITDALEFDFQVASLNINNIPYRDKFQDKQIYLGLKNIKGLPRDVA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++PF ++EDF  ++ ++    +++  LV  G  D F  +R ++LQ+L N+  
Sbjct: 764  YWIIE---NRPFTNVEDFILKLPTQYHKVQLITPLVQVGLFDVFEKNRQKILQNLPNLFV 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            +A  +         ++FA    ++++            + +FE E+ ++G   S HPL  
Sbjct: 821  FADEL--------GSLFADTNYSWTEA------EDYTEAEKFELEKEIIGIGLSEHPLVK 866

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                         ++ V         +   ++S +  +T+ G  + ++  S+  ++ E  
Sbjct: 867  LAKS-ATQAFTPIQDLVENNH---ATILVEILSIRVIRTKTGENMAFLQVSDAKRKMEVT 922

Query: 1031 FFP 1033
             FP
Sbjct: 923  VFP 925


>gi|319947285|ref|ZP_08021518.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            australis ATCC 700641]
 gi|319746527|gb|EFV98787.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            australis ATCC 700641]
          Length = 1033

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 296/1023 (28%), Positives = 474/1023 (46%), Gaps = 101/1023 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   S Y+ ++  +S+ + + +        I + D +NL+   EF ++   AG+  ++
Sbjct: 3    TQLDTKSVYTFMDSLVSIRDYIQRAKEMGYQQIGLMDIDNLYGGYEFLEECQKAGMGAVL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  L++++                     L+    +GY+ LI++ S   +          
Sbjct: 63   GLDLEVELPAGPLSIR-------------LIALGTKGYKHLIKISSMKMMGT-------T 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S  Q    E + ++     G                    +  L G    + +     
Sbjct: 103  DWSAFQHFL-EDIAIVVPYFEGI------------------EYLDL-GQDFAIGVFPDTP 142

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                        A     P+   +   + S  D E+  +L A+ ++  +  K+   V   
Sbjct: 143  ------------AKQFSRPVFPLHTVRYFSTSDLESLQMLHAIRNNCSL--KEVGAVDTS 188

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
                   E+   F          +E A             LPR       + +K    EL
Sbjct: 189  MMFLPPEELERAFVHNYPDSIAYLEKALVAVHYEIDTQLKLPR------FNPEKPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R  +  GL         +KG     Y++RL  EL VI +M F  YFLIV D +++ +   
Sbjct: 243  RELSEEGLR--------SKGLDQTVYQERLRHELAVIHQMGFDDYFLIVWDLLRFGRSQG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R + I
Sbjct: 295  YYMGMGRGSAVGSLVAYALDITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPKFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +YV+N+Y    VAQI+TF +  AK A+RDV +    P  +   L  L            A
Sbjct: 355  QYVKNRYRSPHVAQIVTFSTFGAKQAIRDVFKRFGTPEYE---LTNLTKRIGLRDTLASA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  FR+A  + P   +  EI++++EG  R  S HAAG+V+    L+  +P+      
Sbjct: 412  YEKNLAFRQAIQSRPEYRKGFEIAKRIEGQPRQTSIHAAGVVMSGEDLTNQIPIKMG--E 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETYH 610
            ++ +TQ++   +E  GL+K DFLGL+ LT  Q+  + + ++    + +  IP +D ET  
Sbjct: 470  EMNLTQYDAHGVEANGLLKMDFLGLRNLTFAQRMQEAVKEKYQKDIKIEDIPLEDPETIA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E +G  + L  +QP C E+I+A  SL RPG  D I  +  RK+GKEK
Sbjct: 530  LFAAGNTKGIFQFEQTGAIRLLRRVQPSCFEEIVATTSLNRPGASDYIDNFVKRKHGKEK 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  I P ++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK   EM + ++
Sbjct: 590  VDMIDPSLEGILAPTYGIMLYQEQVMQVAQTFAGFSLGKADILRRAMGKKNVAEMHRMED 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI GA   G S   A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F   
Sbjct: 650  DFIKGAIALGHSAEKAKQVFAIMEKFAGYGFNRSHAYAYSALAFQLAYFKVHYPDVFFDI 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA QF+ Q+ P ++NT     K  D +IY  +  IKG+    A
Sbjct: 710  MLN------YSSSDYLTDALQFDFQVAPLTINTIPYKDKFQDQKIYLGMKNIKGLPKDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I++     PF+S+EDF  R+ ++     +L  LV  G  DCF  +R ++LQ+L N+  
Sbjct: 764  YWIIDQR---PFESIEDFILRLPNQYHKLPLLTPLVELGLFDCFEKNRRKVLQNLPNLFV 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            +A  +         ++F     +++D          + + ++E EQRV+G   S HPL  
Sbjct: 821  FADEL--------GSLFGQANYSWTDA------EDYSKAEKYEMEQRVIGVGLSPHPL-- 864

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +     +      +   G    +   V S +  +T+ G  + ++  S+  K+ +  
Sbjct: 865  --VEIVAASSQPTRPIASLSEGEQATILVEVQSIRTIRTKNGENMAFLQVSDLQKKMDVT 922

Query: 1031 FFP 1033
             FP
Sbjct: 923  LFP 925


>gi|219883035|ref|YP_002478199.1| DNA polymerase III, alpha subunit [Arthrobacter chlorophenolicus A6]
 gi|219862041|gb|ACL42382.1| DNA polymerase III, alpha subunit [Arthrobacter chlorophenolicus A6]
          Length = 1401

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 278/1164 (23%), Positives = 466/1164 (40%), Gaps = 209/1164 (17%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            +FVHL  H+ +S L+G   + ++  + A   Q A+AITD  +L  A  F++   AAGI+P
Sbjct: 2    AFVHLHNHTEHSSLDGLARIKSVAKRAAELGQTAMAITDHGSLAGAWRFTKACKAAGIKP 61

Query: 70   IIGCQLDIDMQDNLKMT----------------NQGKTPFPTVPSIVLLVSTAEGYQRLI 113
            IIG ++ + + D  +                   +G T       + LL    +G++ L+
Sbjct: 62   IIGIEIYMSIGDRFERNSEIVDRNDDTTADADDGKGDTKEKRYEHLTLLARNEQGWKNLL 121

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI------------------ 155
             L ++    +      RI    L+E   EGLI+L+G  +GP+                  
Sbjct: 122  ALHNKA--EESYWYKPRIDYKLLKE-HGEGLIILSGCLAGPVAGPLSRAAATKTASEQAA 178

Query: 156  ---------------------DRAFFFNSSQ---VAEKRLLTFKKLFG-DRLYVNLQRHR 190
                                  +A    S++    A K L T     G + +Y+ +  H 
Sbjct: 179  AGALAAREANEEDEASKLDAEAQASLAKSAEFAAEARKNLDTLIDCVGKENVYLEIMYHS 238

Query: 191  GY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               ++     + QL+  +E+P+V TN+  +  E D   H+  +AV     +    R +  
Sbjct: 239  IEAEQSVLKPIGQLSREYEIPMVVTNDCHYEEEGDAHHHEGFLAVGSKKGLDDPARFKFN 298

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               Y       +       ++  +   + +  +          P     +    +   ++
Sbjct: 299  GSGYYVKSEAEMLDIKPGSKSWADACAMTQVIADRCDDQVIPTPHQRLPKYPLPEGFTDS 358

Query: 310  --ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
               L+     G   R           +Q+ + RL  EL++I  M F  YFLI+ D I W 
Sbjct: 359  NVYLKQLVKEGAIARYG------SPLSQEVKDRLKTELDIIKDMGFPDYFLIMWDVINWC 412

Query: 368  --------------KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
                          +K  I VGPGRGS AGS  +Y LTI  +DPL  +LLFERFL P R 
Sbjct: 413  RSDAPIEFDNPDAPRKKPILVGPGRGSAAGSAVSYCLTIVGLDPLYNNLLFERFLEPGRA 472

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP----- 468
             MPD D+DF + RRDEV  Y+  ++G   VA+I TFG   +KAA++D  R L+       
Sbjct: 473  GMPDIDVDFEKGRRDEVFAYLGYRWGKGNVARIGTFGVALSKAAIKDAARILKPSGPSEE 532

Query: 469  -----------------------------------YSQVDRLCKLIPNDPAHPVSLQAIA 493
                                                   +++  L+P           +A
Sbjct: 533  IKAQAKEFFAAGDRGKGASLLREAEKAATERATQIMRLGNKMSDLVPASGEKAYDFDQLA 592

Query: 494  DDSR-----FREARLADPSVD-RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            D        FR+           +LE+++  EG+ ++ S HA G V+   PL  LVP+  
Sbjct: 593  DPKDQAGQAFRDLVEEAGQDALDILEMARSFEGVIKNESIHACGFVVSPEPLDDLVPLRW 652

Query: 548  DVRSDLP------VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--------G 593
               +         V  ++   +E  G +K D LGL  L ++  +L+ +            
Sbjct: 653  ASHAADADPAAPRVICWDGPEVEDYGFLKMDILGLMNLDIVATALENIEMTTGEKLTMDD 712

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            V    +         + L+    T G+FQ+ES+GM +  + + P+ + DI A+V+L+RPG
Sbjct: 713  VPHPDTQGDPKVDAAFALIAAGNTGGVFQMESAGMVKIAQDVVPESLTDISAIVALFRPG 772

Query: 654  PI--DNIVVYNNRKNGKEKIVSI--------HPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            P+       Y  RKNG E++              I  +L +T GV ++QE +M++  ++S
Sbjct: 773  PLAAKVPDRYAARKNGLEEVDYNQFTADKTEQEWIAKVLGDTYGVFVFQESLMRLGTVIS 832

Query: 704  GYSLSEADVLRRAMGKKIKEEM-----------DKQKERFISGASKNGISKTIAVNIFEL 752
            G+  S+  VLR+A+GKK  ++M           +++             S   A ++FEL
Sbjct: 833  GFDASQRSVLRKAVGKKDAKKMAEVGEMLAAGAEQEFFDEDGAMISPKFSPKTAAHMFEL 892

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +   A Y FN SH+AAYA +++ TA++K ++PVE+ AA + +   + +++  F    +  
Sbjct: 893  MKGSASYLFNASHSAAYAQLAFVTAYLKANWPVEYAAAILAIADKDDKRMNAFWS-LKTD 951

Query: 813  NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
             I ++ P +N         +  +   LA +K VG      + E   + PF +L D  +RV
Sbjct: 952  GITVLAPDINLSLARTAPVNGSVQMGLAEVKEVGVAGHYIVAERQKNGPFKNLHDVLTRV 1011

Query: 873  --------DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
                    +  KL    ++ L+ AGALD FG  R+ LL +L    K              
Sbjct: 1012 TVPGKNGAEPTKLPVGAIQGLIEAGALDSFGP-RLGLLMTLRAAHKT------------- 1057

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL------RKM 978
                           L   +  +       +++ LG     HPL   K  +         
Sbjct: 1058 -------------ELLPIDAEWSDVEESTRQRQRLGVSLGTHPLQSLKDEILAWEGPAGG 1104

Query: 979  GIKGYEESVATIRGNNIRLAAMVV 1002
                         G  +    ++ 
Sbjct: 1105 KATPLHRIAD-ENGEAVLTVGVIS 1127


>gi|167568660|ref|ZP_02361534.1| error-prone DNA polymerase [Burkholderia oklahomensis C6786]
          Length = 844

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 237/860 (27%), Positives = 386/860 (44%), Gaps = 46/860 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S + ++++  A     IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSADELVERAKAHGYRGIAITDECSLAGAPRMHVAANAEGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G   D+   D       G  P P    +VLL    EGY  L EL+S    +D  K +
Sbjct: 69  LVVGAYFDVTPDD----VAPGHDPGPGAFGLVLLARNREGYGNLSELISW-RRMDAPKGT 123

Query: 129 VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            R+    L    +    L  +    +  +        + + + +L  F  LFG+R  + L
Sbjct: 124 YRLTPQMLAAPPSTFAHLRGVPDCFAILVPTY--PARADMLDAQLAWFDALFGERARLGL 181

Query: 187 -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQKD 244
            Q  R  D     ++        + +VA  +    +       D + A+     +     
Sbjct: 182 VQLQRALDGAHREEIRAAGERRGMRIVALGDVTMHARSCKPLQDAMTAIRLGMPIAECGY 241

Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                 + +L+ R  +  +F    EA+  T  I   C F L       PR +  E     
Sbjct: 242 ALAPNAEQHLRLRQRIAQLFP--AEAIAETCRILDACDFSLDELRYEYPRELVPEG---- 295

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               + LR +  +G   R   G           ++R+ +EL +IA +K+  YFL V D +
Sbjct: 296 HTPTSYLRRETWSGAHRRYPDGV------PDTVQERIRYELELIAELKYEPYFLTVYDIV 349

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           Q+A+  +I    GRGS A SV  + L +T++ P + SLLFERF++ +R   PD D+DF  
Sbjct: 350 QYARSRDIL-CQGRGSAANSVVCFCLGVTEVHPEKSSLLFERFISRERGEPPDIDVDFEH 408

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K       
Sbjct: 409 QRREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDG 468

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
               L                P +    E++ +L G  RH S H+ G VI    L++LVP
Sbjct: 469 SRDLLARFESV----GLDPDTPLIRAWAELAARLLGFPRHLSQHSGGFVISRGKLTRLVP 524

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-----DFLAQRGVKVDLS 599
           +         V Q++   +E  GL+K D L L  L+ L ++          + G    + 
Sbjct: 525 VENAAMEGRRVIQWDKNDLEALGLMKVDVLALGMLSALHRAFDMITAWRGRRDGQPFGMQ 584

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--N 657
            IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI    
Sbjct: 585 SIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRDYYDLVIEVAIVRPGPIQGGA 644

Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
           +  Y  R+ G E +      + P L+ T+GV I+QEQVMQIA + +G++  EAD LRRAM
Sbjct: 645 VHPYLKRRQGLEPVTYPKDDLKPALERTRGVPIFQEQVMQIAIIAAGFTPGEADALRRAM 704

Query: 718 GKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
                K  +++ + + + G  +       A  IFE +  F +YGF +SHAA++A + Y +
Sbjct: 705 AAWKRKGNLEQYRRKIVDGMRERDYPPEFAEQIFEQIKGFGEYGFPESHAASFAHLVYAS 764

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----- 831
           +W+K H P  F+AA +  +        +  QDA++  + ++P        D  +      
Sbjct: 765 SWLKCHEPAIFVAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATASGWDASLEAQPGA 824

Query: 832 -----DNRIYYSLAAIKGVG 846
                   +   L+ ++G+G
Sbjct: 825 APPDGQPAVRLGLSLVRGLG 844


>gi|307708635|ref|ZP_07645099.1| DNA polymerase III alpha subunit [Streptococcus mitis NCTC 12261]
 gi|307615384|gb|EFN94593.1| DNA polymerase III alpha subunit [Streptococcus mitis NCTC 12261]
          Length = 1033

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 291/1022 (28%), Positives = 481/1022 (47%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S++  +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIDKYVRAAKEFGYTHLAMMDIDNLYGAFDFLEVTKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++++ + D                 +  L  ++ GYQ+L++L +     ++       
Sbjct: 63   GLEMNVIVDDKDVN-------------LRFLALSSVGYQQLMKLSTAKMQGEK------- 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E ++++                     + L       G   Y+ +     
Sbjct: 103  SWSVLSQYL-EDIVVIVP--------------YFEELELLN-----LGCDYYIGVYPE-- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++          +D E   VL A+  + +  ++   R   D
Sbjct: 141  ----------TLASEFHHPILPLYRVNTFESKDREVLQVLTAIKEN-LPLREVPLRSKQD 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+AL+N  ++    S+ L     +          +  +    EL
Sbjct: 190  VFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLKLPR-------FNPARPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  GL          KG   ++Y+ RLD EL VI  M F  YFL+V D +++ + N 
Sbjct: 243  RERAELGLAQ--------KGLTGKEYQDRLDQELAVIHDMGFDDYFLVVWDLLRFGRSNG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 295  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 355  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKHG--D 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+       +  I  +D ET  
Sbjct: 470  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEDIHLKIEEIDLEDKETLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 590  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDATAMHEMRA 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  SFIQGSIEAGHTAEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQI 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++ P S+NT     K+ +  IY  L +IKG+    A
Sbjct: 710  MLNSANS------DYVTDALEAGFEVAPLSINTIPYHDKIANKSIYLGLKSIKGLSKDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E     P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 764  IWIIEHR---PYSNIEDFLAKLPENYLKLPLLEPLVKVGLFDSFEKNRKKVFNNLVNLFE 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ D              +F  EQ +LG   S HPL  
Sbjct: 821  FVKVL--------GSLFGETIYSWQDS------EDWTEQEKFYMEQELLGVGVSKHPLQA 866

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 867  ----IASKAIYPITPISNLSENSYAIILVEVQKIKVIRTKKGENMAFLQVDDSKKKLDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  LF 924


>gi|225868663|ref|YP_002744611.1| DNA polymerase III alpha subunit [Streptococcus equi subsp.
            zooepidemicus]
 gi|225701939|emb|CAW99466.1| DNA polymerase III alpha subunit [Streptococcus equi subsp.
            zooepidemicus]
          Length = 1036

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 287/1026 (27%), Positives = 473/1026 (46%), Gaps = 102/1026 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+   +       AI I D +NL+ A  F +     G+QPI
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFKQAKRLGYQAIGIMDQDNLYGAYHFIKGCQRHGLQPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ I +++                   L+     GYQ+L++L +        K S  
Sbjct: 62   LGLEVAITVKEQALTLK-------------LVAKNDTGYQQLLKLSTE-------KMSGD 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL-FGDRLYVNLQRH 189
            + L  L +   EG+ ++   S                       + L      ++ +   
Sbjct: 102  LDLDTLVQYL-EGIAVIVPFSQS--------------------LRDLGLPFDYFIGI--- 137

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               D    S + ++  T    L+      +    + E   +L A+  +  ++        
Sbjct: 138  ---DEA--SDLSKIGSTE--RLIPFRTVRYFDNAETETLQMLHAIRDNISLADTALVAKD 190

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                   +          PEAL N V +    ++       +          +  K  + 
Sbjct: 191  -QFLAPCQEMTAVFQEKCPEALVNLVNLTASIAYHFDTDLKLPR-------FNRDKPAKE 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            ELR    +GL  R            + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELRELTESGLRERQ--------LWKEPYQSRLAEELAIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AY+L IT IDP++ +LLFERFLN +R SMPD DID     R E
Sbjct: 295  RGYYMGMGRGSAAGSLVAYSLRITGIDPVKNNLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             + YV+++YG E  AQI+TF +   K A+RDV +   +P  ++  L K I          
Sbjct: 355  FLHYVRDRYGSEHSAQIVTFSTFGPKQAVRDVFKRFGVPEYELTSLTKKIGF---KDTLS 411

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                 +  FR+   +     +  EI++++EG  R  S HAAGIV+ D  L+  +P+ +  
Sbjct: 412  TVYEKNIAFRQTINSRLEFQKAFEIAKRIEGNPRQTSIHAAGIVMSDDHLTNHIPLKKG- 470

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHET 608
              D+ VTQ++   +E  GL+K DFLGL+ LTL+QK  + +       +D+  I  +D ET
Sbjct: 471  -EDMMVTQYDASAVEANGLLKMDFLGLRNLTLVQKMQEKVVNDYGLSIDIEAINLEDPET 529

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E  G    L+ ++P   E+I+A  SL RPG  D    +  R+ G+
Sbjct: 530  IALFARGDTKGIFQFEQHGAISLLKRIKPTSFEEIVATTSLNRPGASDYTQNFIKRRQGQ 589

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E I  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK   EM + 
Sbjct: 590  ENIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLVEMQRM 649

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E F++GA   G S+  A  +F  + KFA YGFN+SHA AYA +++Q A+ K HYP  F 
Sbjct: 650  QEDFLNGAKALGRSEETARLLFARMEKFAGYGFNRSHAFAYAALAFQLAYFKAHYPEVFF 709

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M            +  DA  F  +    ++NT   + K+  ++IY  L  IKG+   
Sbjct: 710  DVMMN------YSSSDYITDALDFGFEAAQVTINTIPFNDKIERHKIYMGLKNIKGLPRE 763

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             +  I+E   ++PF S+E+F   +  K      LE L+  G  D F  +R +++ +L+ +
Sbjct: 764  FSYWIIE---NRPFTSVENFLCSIPEKYQKTSFLEPLIKIGLFDGFEKNRQKIINNLEGL 820

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +   +         ++FA    ++       +    +++ ++  EQ +LG   S HPL
Sbjct: 821  LTFVNEL--------GSLFADSSFSW------VETEDYSAAEKYYFEQDLLGVGMSKHPL 866

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                    +            ++     L   + + +  +T+  G ++ +++ ++  K+ 
Sbjct: 867  LAV----AEKSTVAVTPITKLVKDTEATLLVQIDAIRVIRTKSSGQQMAFLSVTDTKKKL 922

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 923  DVTLFP 928


>gi|306835337|ref|ZP_07468361.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49726]
 gi|304568783|gb|EFM44324.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49726]
          Length = 973

 Score =  453 bits (1164), Expect = e-124,   Method: Composition-based stats.
 Identities = 264/1011 (26%), Positives = 433/1011 (42%), Gaps = 100/1011 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   SSYS L+GA     ++ +        +A+ D +  +  ++F++ A  AG+  +
Sbjct: 48   FAELHAVSSYSFLDGAAEPEELVARALELGLEGLAVVDRDGFYGLMKFAEAAAKAGLPAM 107

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +L +                     + +L  T EGY+RL  L++R  +    K SV 
Sbjct: 108  YGAELSLAEAP-----------------VTVLARTPEGYRRLSRLIARARMDAGEKGSVA 150

Query: 131  ICLSW--LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                    +E+  E   +L                 +  +K     +++  D + +    
Sbjct: 151  YPPLDAVARELEKECFFLL---------------GWEAIQKIDHVLERIKIDSIVLEYAC 195

Query: 189  HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247
                +       +     + L  +AT      + +         A+AH  ++        
Sbjct: 196  TMSPEDADHHGFLD--KYNNLRAIATARPAAATRDQVRLAAAKRALAHRQSLEEAAPDAH 253

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                 ++++  +M  +    PE +  TV +AR CSF     AP LP F+  E       E
Sbjct: 254  PMGAGWMRSGEQMAQLLPGRPELIAETVHLARECSFTWGALAPNLPDFVVPEG----HTE 309

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + L ++     + R A         A+   +++  EL +I ++ F GYFLIV D + + 
Sbjct: 310  MSWLEHEVWRRGKKRYASRPPEIQARAK---KQMRHELGIIKQLGFPGYFLIVCDLVDFC 366

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            ++ NI    GRGS A S   +AL IT+ +P+   LLFERFL+PDR   PD DID    RR
Sbjct: 367  RQENIL-CQGRGSAANSAVCFALGITNAEPISAQLLFERFLSPDRDGPPDIDIDIESGRR 425

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EVI+YV   +G +R AQ+    + + K A RD  RAL  P    D   K I   PA   
Sbjct: 426  EEVIQYVYRTHGRDRAAQVANVITYRRKGATRDAARALGYPQGSADAWSKGIAELPA--- 482

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                                   +  ++++     RH   H+ G+V+ DRP++ +VPM  
Sbjct: 483  ----------------------DVSLLAEQFLDQPRHLGIHSGGMVLCDRPIADVVPMEW 520

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                   V Q++      AGL+KFD LGL  L  L   +D +      +V L  +   + 
Sbjct: 521  ARMEGRSVLQWDKDDCAAAGLVKFDLLGLGMLEALHHMIDAVRATTGREVRLWELDLAEP 580

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664
              Y +L     +G+FQ+ES      L  ++P C  D++  V+L RPGPI   ++  Y  R
Sbjct: 581  AVYDMLCRADAVGVFQVESRAQLATLPRLKPRCFFDLVVEVALIRPGPIQGGSVHPYLRR 640

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKE 723
            ++G E +   HP+++  L +T G+ ++QEQ+MQIA   +G++ +EAD LRRAM  K+   
Sbjct: 641  RDGLEPVTYDHPVLEKSLGKTLGIPLFQEQLMQIAVDAAGFTGAEADDLRRAMGSKRSPA 700

Query: 724  EMDKQKERFISGAS-KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            +M   + RF  G    NGI   +A  ++  +  FA YGF +SH+ ++A + Y +AW K H
Sbjct: 701  KMAALRSRFFEGLRATNGIDGEVAEKLWAKITAFAAYGFPESHSQSFASLVYFSAWFKHH 760

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAA 841
            YP EF    +  +       +   QDAR+  ++++P S+N      +      I   L  
Sbjct: 761  YPAEFCVGLLRAQPMGFYSPQSLIQDARRHGVRVLPLSINDSGAQARALPTGEIRLGLNL 820

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            IKG+G   A  +  A    PF S+ D   R D   L+   +E+L  AGAL+C G  R Q 
Sbjct: 821  IKGLGDKAAERVEAA---APFSSVSDLSRRAD---LSVEQVEALATAGALECLGLERRQA 874

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L             E+       +  A                  ++      +    G 
Sbjct: 875  LWQAG-----VAATEREGMLPGTSALAS-----------PHLPGMSAFELMATDVAATGV 918

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
                 P+++ +  L    +           G  +R+A ++  +Q+ +T  G
Sbjct: 919  THDKQPMELVRAALGD--VLPSSHLPHVPDGTRVRIAGIITHRQRPRTASG 967


>gi|237820831|ref|ZP_04596676.1| DNA polymerase III DnaE [Streptococcus pneumoniae CCRI 1974M2]
          Length = 950

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 291/1022 (28%), Positives = 485/1022 (47%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                 +  L  ++ GYQ+L++L +     ++       
Sbjct: 63   GLEMTVFVDDQEVN-------------LRFLALSSVGYQQLMKLSTAKMQGEK------- 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E + ++            +F+  +  E          G   Y+ +     
Sbjct: 103  TWSVLSQYL-EDIAVIVP----------YFDRVESLE---------LGCDYYIGVYPE-- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 141  ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQD 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+AL+N  ++    S+ L +   +          +  +    EL
Sbjct: 190  VFISASSLEKLFQERFPQALDNLEKLISGISYDLDISLKLPR-------FNPARPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G         + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N 
Sbjct: 243  RERAELG--------IVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 295  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 355  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--D 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+       +  I  +D ET  
Sbjct: 470  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 590  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDVSAMHEMRA 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  SFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQI 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    A
Sbjct: 710  MLNSANS------DYLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSNDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 764  LWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ +              +F  EQ +LG   S HPL  
Sbjct: 821  FVKEL--------GSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQA 866

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 867  ----IASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  LF 924


>gi|148554041|ref|YP_001261623.1| DNA polymerase III subunit alpha [Sphingomonas wittichii RW1]
 gi|148499231|gb|ABQ67485.1| DNA polymerase III, alpha subunit [Sphingomonas wittichii RW1]
          Length = 1196

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 216/890 (24%), Positives = 378/890 (42%), Gaps = 53/890 (5%)

Query: 164  SQVAEKRLLTFKKLFGDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
                 + L   K+   DR+++ L   + G DR R +   +LA    +PL+ATN++L+ + 
Sbjct: 246  DDAVRRALSILKRAAPDRVWLGLSMPYSGRDRRRIATYARLAKEVGVPLLATNDALYATP 305

Query: 223  EDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
                 HDV+  +    T+     R     + +LK   EM  +F D P+A+   V +  R 
Sbjct: 306  GQRPLHDVVTCIRLGLTLDEAGTRLAANGERHLKPGHEMARLFVDHPQAVAAGVALLDRI 365

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
             F L+      P     E        +  L +    G+  R            Q     +
Sbjct: 366  DFDLKQLKYEYPHEPVPEGW----TPQGWLEHLVEKGIAWRYGPN------PEQKVLDLV 415

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            + EL ++   +++ YFL V D + +A+   I    GRGS A SV  Y L IT++DP+   
Sbjct: 416  ETELKLVRDARYAYYFLTVHDVVAFARGEKIL-CQGRGSAANSVICYVLGITEVDPVHNK 474

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLF RF++ DR   PD D+DF  +RR+EV+++V  +YG  R     T    + ++A+R++
Sbjct: 475  LLFSRFISEDRNEPPDIDVDFEHERREEVMQHVYARYGRHRAGIAATVIHYRPRSAVREI 534

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
             + L +      +L   I    A  +  +   +          +  + RL  + ++L   
Sbjct: 535  AKVLGLSEDVAAKLTSTIWGSYAATMEGKRFHET----GFDPGNVEIARLNMLVEQLLTF 590

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             RH S H  G V+ +  L + VP++     D    +++   I+  GL+K D L L  LT 
Sbjct: 591  PRHLSQHVGGFVLTEDRLDETVPIHNAAMDDRTFIEWDKDDIDALGLMKVDVLALGMLTC 650

Query: 582  LQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            ++K+     A  G +  L+ IP +  E Y +L    ++G+FQ+ES      L  ++P  +
Sbjct: 651  IRKAFALIQAHTGTEYTLATIPKERKEVYDMLCKGDSIGVFQVESRAQINMLPRLRPRTL 710

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEK------IVSI-------HPLIDPMLKETQG 687
             D++  V++ RPGPI   +V+   K  KE+      I           P ++ +L +T G
Sbjct: 711  YDLVVQVAIVRPGPIQGGMVHPYLKRRKEEREGRLVIDYPGPKGPDGAPELEDVLSKTLG 770

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE-RFISGASKNGISKTIA 746
            V ++QEQ M++A + + ++  EA+ LRRAM          + E + + G    G  +  A
Sbjct: 771  VPLFQEQAMKLAIVAAKFTDGEANQLRRAMATFRHVGTMPEFEGKMVEGMVARGYPRDFA 830

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
               F  +  F  YGF +SHA ++A++ Y ++++K  YP  F  A +  +        +  
Sbjct: 831  ERCFAQIKGFGSYGFPESHAQSFALLVYASSYIKCRYPAVFACALLNSQPMGFYAPAQIV 890

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDN----RIYYSLAAIKGVGTTTARHIMEASADKPF 862
            +DAR+  +++    VN    D  +        +   L  ++G     A  I +      F
Sbjct: 891  RDAREHGVEVRAADVNRSGWDNSLEGPPGRLALRIGLRQVEGFRQAWADEIAKVRGQGAF 950

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             S+E+   R    KL RR L  L  A A    G  R   L              +   + 
Sbjct: 951  ASIEELARRA---KLPRRALRLLADADAFRSLGLDRRAALW-----------EARRTPDG 996

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
               +FA  K     +           S     + ++      GHP+   + + R+ G+  
Sbjct: 997  ELPLFAAAKARELGEEPDAMLPAMPLSEHVAADYQMTRLSLKGHPMQFLRDVFRREGVLS 1056

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              E      G   ++A +V+ +Q+    +G    ++T  +         +
Sbjct: 1057 CAEVAQAKNGRRAKVAGVVLVRQRPG--EGKA-IFITLEDETGITNVLLW 1103



 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 35/144 (24%), Gaps = 67/144 (46%)

Query: 11  FVHLQVHSSYSLLEG--------------------ALSLNNILDKIAADQQPAIAITDTN 50
           F  +   ++YS L G                                        I D N
Sbjct: 8   FAEMVAATNYSFLRGASAAADMVAAARAAGHAGIG--------------------IADRN 47

Query: 51  NLFSALEFS-------QKACAAG-----IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS 98
           ++   +          ++A  AG      +   G +L                     P 
Sbjct: 48  SVAGVVRAWDAVRKAREEARKAGHADLAFKLATGARLVF---------------VDGTPD 92

Query: 99  IVLLVSTAEGYQRLIELVSRMYLL 122
           IV   +T  G+ RL  L++     
Sbjct: 93  IVAYPATRRGWGRLTRLLTTGNRR 116


>gi|312864545|ref|ZP_07724776.1| DNA polymerase III, alpha subunit [Streptococcus downei F0415]
 gi|311099672|gb|EFQ57885.1| DNA polymerase III, alpha subunit [Streptococcus downei F0415]
          Length = 1035

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 285/1025 (27%), Positives = 480/1025 (46%), Gaps = 101/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  +   + YS ++  ++L + + +        + I D +NL+ A  F+ +A  AG+Q I
Sbjct: 2    FAPIDTKTVYSFMDSLVNLKSYVKRAKELGYSHLGIMDQDNLYGAYHFAVQAKEAGLQAI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +LD  + D   +  +  +               +GY+ L++L +             
Sbjct: 62   VGLELDFRLADESLLKVKLLSL------------DTQGYRNLLKLSTLKMSDG------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L+ L      G+ ++     G    +                        Y+ +    
Sbjct: 103  LDLTDLPNYLN-GVALIIPYFEGLDSLSL-------------------PFDYYIGVGLDS 142

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                            ++ P++  +   +  E D +   VL A+  +  +    +P    
Sbjct: 143  PE------------RAYKKPILPLHTVRYYEEADRQTLQVLHAIRDNLPLRD-VQPVPAG 189

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +    +    +     PEAL+N   +    S+            ++    +  KE   E
Sbjct: 190  QYLRSCQEMQEAFEERFPEALKNLEALLAPISYHFD-------HQLKLPRFNRDKEAVLE 242

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR  A AGL+ +           A  Y++RLD EL  I +M F  YFLIV D +++ +  
Sbjct: 243  LRELAEAGLKEKC--------LLASTYQERLDKELATIHQMGFDDYFLIVWDLLRFGRSR 294

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +  +G GRGS AGS+ AY L IT IDP++ +LLFERFLN +R SMPD DID     R E 
Sbjct: 295  HYYMGMGRGSAAGSLVAYTLDITGIDPVKNNLLFERFLNEERYSMPDIDIDLPDVYRSEF 354

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV+++YG    AQI+T+ +  AK A+RDV +       ++  + + I           
Sbjct: 355  LHYVRDRYGSRHSAQIVTYSTFGAKQAIRDVFKRFGAAEYELTNITRKIGF---RDDLAS 411

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            A   +  FR+   +     +   I+QK+EG  R  S HAAGIV+ D  L+  +P+     
Sbjct: 412  AYEKNLSFRQMINSKEEYRKAFAIAQKIEGQPRQTSIHAAGIVMSDDDLTNHIPL--KSG 469

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFLAQRGVKVDLSLIPFDDHETY 609
             D+ +TQ++   +E  GL+K DFLGL+ LT +Q+       ++G+++D+  I  +D  T 
Sbjct: 470  EDMMITQYDAGAVEANGLLKMDFLGLRNLTFVQRMAEKLAEEKGIQLDIRSIDLEDPGTL 529

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  RK G+E
Sbjct: 530  ALFAAGRTKGIFQFEQAGAINLLKRIKPAKFEEIVATTSLNRPGASDYTENFIRRKYGQE 589

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I  I PL+ P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK + EM K +
Sbjct: 590  AIDLIDPLVAPILEGTYGIMLYQEQVMQIAQVFAGFTLGKADLLRRAMSKKNQAEMQKME 649

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              F+ GA   G + T A  +FE +AKFA YGFN+SHA AY+ +++Q A+ K HYP  F  
Sbjct: 650  ADFMQGAKALGRNLTTAKELFERMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYPSIFYD 709

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +            +  DA Q + ++   S+NT     K+ D  IY  +  +KG+    
Sbjct: 710  VMLN------YSSPDYISDALQADFKVGSLSINTVPYTDKISDGIIYMGMKNLKGLPRDL 763

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E     PF S+EDF +R+         +  L+  G  D F  +R ++ ++L+++ 
Sbjct: 764  AYWIIETR---PFSSIEDFLTRLPENYQKSDYIRPLIQIGLFDQFEPNRRKVEENLESLF 820

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             +   +         ++FA     +       +    + S +++ E + LG   S HPL 
Sbjct: 821  TFVNEL--------GSLFADSSYNWL------EVEDYSPSQKYDLEMQWLGVGISPHPLV 866

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYE 1028
                  R+     ++E V       +R+   + + +  +T+ KG ++ +V+ ++  ++ +
Sbjct: 867  GLAKE-REGTFIPFDELVT---NEQVRVLGQIEAVRVIRTKSKGQQMAFVSLTDTKQKLD 922

Query: 1029 ANFFP 1033
               FP
Sbjct: 923  VTVFP 927


>gi|149007158|ref|ZP_01830822.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP18-BS74]
 gi|307127553|ref|YP_003879584.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae 670-6B]
 gi|147761196|gb|EDK68163.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP18-BS74]
 gi|306484615|gb|ADM91484.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae 670-6B]
 gi|332075509|gb|EGI85977.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae GA17545]
          Length = 1033

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 292/1022 (28%), Positives = 486/1022 (47%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                ++  L  ++ GYQ+L++L +     ++       
Sbjct: 63   GLEMTVFVDD-------------QGVNLRFLALSSVGYQQLMKLSTAKMQGEK------- 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E + ++            +F+  +  E          G   Y+ +     
Sbjct: 103  TWSVLSQYL-EDIAVIVP----------YFDRVESLE---------LGCDYYIGVYPE-- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 141  ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQD 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+AL+N  ++    S+ L     +          +  +    EL
Sbjct: 190  VFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLKLPR-------FNPARPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G         + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N 
Sbjct: 243  RERAELG--------LVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 295  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 355  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--D 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +D ET  
Sbjct: 470  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEIDLEDKETLD 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 590  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRA 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  SFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQI 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    A
Sbjct: 710  MLNSANS------DYLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSNDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E     P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 764  LWIIEHR---PYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ +              +F  EQ +LG   S HPL  
Sbjct: 821  FVKEL--------GSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQA 866

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 867  ----IASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  LF 924


>gi|94313057|ref|YP_586266.1| DNA polymerase III subunit alpha [Cupriavidus metallidurans CH34]
 gi|93356909|gb|ABF10997.1| DNA polymerase III alpha subunit [Cupriavidus metallidurans CH34]
          Length = 1153

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 242/987 (24%), Positives = 413/987 (41%), Gaps = 68/987 (6%)

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             IIG +  +       M           P +VLL     G+  L E ++      + K S
Sbjct: 159  LIIGSRFTLTAAPEDTMPP---------PRLVLLARNRIGFGDLCEFITLGRTRAE-KGS 208

Query: 129  VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              +  S L +   E   L  +       +          V   +    +  FGDR ++ +
Sbjct: 209  YLLYPSDLADPQPEQAHLRGMPDCLVVLLPDYCA--DLDVLRAQARWCRATFGDRAWMAM 266

Query: 187  QRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            +  +G+ +    +++ Q++    +PLVA               DVL A+     +S   R
Sbjct: 267  ELLQGHAEAMHRARLQQVSAETGVPLVAAGAVNMHVRSRKPLADVLTAIRIGQPLSACGR 326

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                       R   V       EAL  T+++A +C F L +     P  +  + +    
Sbjct: 327  ALAPNA-EAHLRMRQVLSRLYPREALAQTLKLADQCRFSLDMLRYEYPEELVPDGE---- 381

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                 LR +   G+  R   G       A +++++L  EL +I    +  +FL V D ++
Sbjct: 382  TPITYLRKEVERGITERFPHGM------APEWKKQLKEELELIEEKHYEPFFLTVHDIVR 435

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A++  I    GRGS A S+  Y L IT++ P + +LLF RFL+ +R   PD D+DF   
Sbjct: 436  FARQEGIL-CQGRGSAANSLVCYCLHITEVSPEQANLLFGRFLSRERDEPPDIDVDFEHQ 494

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR+EVI+Y+  KYG  R A   +  + ++++ALRDVGRAL +    V+++ K        
Sbjct: 495  RREEVIQYIYGKYGRHRAALAASLITYRSRSALRDVGRALGIDPGVVEQVVKGQAWWDGG 554

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               +  I+             +V +   ++++L G  RH S H  G VI    LS+LVP+
Sbjct: 555  AAFIDRISRY----GLDPDSITVRQWASLTEQLRGFPRHLSQHVGGFVIARDKLSRLVPI 610

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----KVDLSL 600
                  +  V Q++   +E  GL+K D L L  LT ++++L  +             +  
Sbjct: 611  ENAAMENRSVIQWDKDDLESLGLLKVDVLALGMLTAIRRALTMIPNPDPERAGLPTRMED 670

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
            +P  D +TY ++    T+G+FQ+ES   +  L  +QP    D++  V++ RPGPI   +V
Sbjct: 671  LPDGDVKTYDMICKADTIGVFQIESRAQQSMLPRLQPREYYDLVVEVAIVRPGPIQGGMV 730

Query: 661  YNNRKNG------KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +   K        ++       +I  +L  T GV I+QEQVMQ+A   +G++  +AD LR
Sbjct: 731  HPYLKRREAFRLTRKLPTYFDDVIRRVLGRTLGVPIFQEQVMQLAIEAAGFTPGQADQLR 790

Query: 715  RAMGKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            R+M    +    K+ +  +  A    G  ++ A+ I + +  F +YGF +SHAA++A + 
Sbjct: 791  RSMAAWRRRGDLKKHQDALVRALTGRGYPESFALAICKQIEGFGEYGFPESHAASFAKLV 850

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            Y +AW+K HYP  FL A +  +        +  QDAR+  +   P  V     +  +   
Sbjct: 851  YVSAWIKCHYPEAFLCALLNSQPMGFYSPSQLVQDARRHGVTSQPVDVTISNWESTLEPR 910

Query: 834  R-------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            R       +   +  +KG+    A  I  A   +PFDS+ED   R     L+R  +++L 
Sbjct: 911  REGQNFRDVRLGMNRVKGMREAAALRIEAARVARPFDSVEDLARRAS---LDRHDIDALA 967

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
             A AL      R Q            Q   ++  +               +    +    
Sbjct: 968  AADALVSLAGHRRQARWHARGA--AVQTAHRDLLH-----------DAPPQEHALQLPEP 1014

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                    +   LG     HPL + +  LR +      +      G  +R   +V  +Q+
Sbjct: 1015 KLGEDVAADYASLGLSLKCHPLTLLRHRLRALKFATARQLANCANGRRVRACGIVTVRQR 1074

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              T  G+   + +  +         +P
Sbjct: 1075 PSTASGT--IFTSIEDETGAVNVIIWP 1099



 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 20/54 (37%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
           +V L   S+++ L GA     ++ +        +A+TD  ++           
Sbjct: 14 DYVELHCISNFTFLNGASHPQELISRAFQLGYSGLALTDECSVAGTARAHHAIK 67


>gi|110005217|emb|CAK99543.1| probable dna polymerase III alpha chain transmembrane protein
            [Spiroplasma citri]
          Length = 1014

 Score =  451 bits (1160), Expect = e-124,   Method: Composition-based stats.
 Identities = 305/1025 (29%), Positives = 502/1025 (48%), Gaps = 65/1025 (6%)

Query: 13   HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            HL V +SYSLL   ++ +            ++AI D NN+F   EF Q      I+PIIG
Sbjct: 5    HLNVRTSYSLLSSLITFDKYFTYAMTTGLLSLAICD-NNMFGVYEFHQLCQKNKIKPIIG 63

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
              + I   D                ++ L     +GY  L+E+ S + +  + K++  + 
Sbjct: 64   LNVIIWFNDIP-------------YNMNLFARNQKGYFNLVEISSLVMINTENKKN--VT 108

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
            L  + +  T  + ++             + +     +   T K L      LY+ +    
Sbjct: 109  LDEISKFLTTDVKII-----------INYTTDDYQPELYQTLKSLLKVETDLYLGINNGN 157

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                     +  LA      ++  N   + + ED+ A+ V+  +   T+  +    ++  
Sbjct: 158  LSLLESLQTL--LASEQ---IIWNNKVQYFTSEDFIAYKVVDTIKTQTLFKE---SKMKD 209

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             +   +       + D  +     + +         +H   +   + +      +  +  
Sbjct: 210  LYGWVSPPSYYQQYFDNIKTFITGINV-------FPLHKGTIFDNLLRYPTPEGQTAQQF 262

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L+      L+ +              Y +RL++EL VI +M F+ YFLIV D++++AK+ 
Sbjct: 263  LQEICQTALKQK------RISSSKTTYLERLNYELTVINKMGFNDYFLIVWDYVRYAKQQ 316

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            NI VGPGRGS AGS+ +Y L IT IDP+ ++LLFERFLNP+R S+PD DIDF  D+R+ V
Sbjct: 317  NIFVGPGRGSAAGSLVSYLLDITTIDPITYNLLFERFLNPERKSLPDIDIDFEDDKREMV 376

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + Y+  KYG E VA IITF ++  K A+RD+ R   +   + D++ K +P +  +     
Sbjct: 377  VEYLFEKYGSEHVAHIITFQTIGMKMAIRDICRIFDIAIEEADKMSKAVPLEYNYHYEEA 436

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
             I  +  F   +   P    +    +K+ GL R   THAAG+V+  + L  ++P+ ++  
Sbjct: 437  -INSNPLFEIYQKKYPQ---VFLHLKKIIGLPRQTGTHAAGVVLTQQRLQTIIPV-KEGY 491

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETY 609
            + +  TQ++M ++E+ G++K D LGL+ LT+L   +D + Q      D++ +P +D +TY
Sbjct: 492  NGIYQTQYSMNYLEELGILKMDLLGLRNLTILHDVIDNIYQETKVKLDVNTLPLNDRKTY 551

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL    T GIFQLES GM + L  M PD +EDI+A  SLYRPGP DNI ++  RK    
Sbjct: 552  QLLAQGDTKGIFQLESPGMTKVLVDMAPDQLEDIVATSSLYRPGPQDNIPLFIKRKKKLA 611

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  I   +  +L  T G+I+YQEQVM IAQ ++ +SL++ADVLRRAMGKK    M + K
Sbjct: 612  KVTYIDERLAEILAPTYGIIVYQEQVMLIAQKVANFSLAKADVLRRAMGKKDASIMSQMK 671

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI  A KN   + IA  I+EL+ KFA YGFN+SHA AY+++ YQ A++K +Y  +FLA
Sbjct: 672  TEFIEEAVKNHYVEKIAQEIWELIYKFAAYGFNRSHAVAYSLLGYQMAYLKANYSSQFLA 731

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            + +T  + +  K   +   A++ ++ I+PP++N P   +   DN+I   L  IK +G   
Sbjct: 732  SLLTHVIGDEHKTNDYIALAKKNHLTIVPPNINAPYRQYHTIDNQICVPLLIIKQIGFAF 791

Query: 850  ARHIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
               I +    +     L D   R+  K LNR+  E+L F+GALD F  +R+ L  +   I
Sbjct: 792  FNKIAQEYQTNGMLTDLYDLFIRLYKKGLNRKTYEALCFSGALDVFKMNRITLFNNYQRI 851

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              Y + ++    N  EN+          ++ +E     +  +  E E   LGFY S HPL
Sbjct: 852  LTYIELIKTQEEN--ENLVVDFSLAEKPELVIEPN---DEVICLEKEYEFLGFYLSNHPL 906

Query: 969  DVYKPILRKMGIKGYEESVATIRGNN-IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
               +             ++    G+  + +  +V   +    +  +++ ++   + + E 
Sbjct: 907  KYIREKAGYQDKTTLISNLRLSLGSTNVLI--LVKRLKIITDKNNNKMAFLDCYDESGEI 964

Query: 1028 EANFF 1032
                F
Sbjct: 965  SITAF 969


>gi|148997019|ref|ZP_01824673.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP11-BS70]
 gi|168575555|ref|ZP_02721491.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae MLV-016]
 gi|169832805|ref|YP_001694350.1| DNA polymerase III DnaE [Streptococcus pneumoniae Hungary19A-6]
 gi|307067549|ref|YP_003876515.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae AP200]
 gi|147756719|gb|EDK63759.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP11-BS70]
 gi|168995307|gb|ACA35919.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
            Hungary19A-6]
 gi|183578569|gb|EDT99097.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae MLV-016]
 gi|306409086|gb|ADM84513.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae AP200]
          Length = 1033

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 292/1022 (28%), Positives = 482/1022 (47%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                 +  L  ++ GYQ+L++L +     ++       
Sbjct: 63   GLEMTVFVDDQEVN-------------LRFLALSSVGYQQLMKLSTAKMQGEK------- 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E + ++            +F+  +  E          G   Y+ +     
Sbjct: 103  TWSVLSQYL-EDIAVIVP----------YFDRVESLE---------LGCDYYIGVYPE-- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 141  ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQD 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+AL+N  ++    S+ L     +          +  +    EL
Sbjct: 190  VFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLKLPR-------FNPARPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G         + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N 
Sbjct: 243  RERAELG--------LVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 295  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 355  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--D 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+       +  I  +D ET  
Sbjct: 470  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 590  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRA 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F++L KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  SFIQGSIEAGHTAEKAEQVFDVLEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQI 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    A
Sbjct: 710  MLNSANS------DYVTDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSNDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E     P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 764  LWIIEHR---PYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ +              +F  EQ +LG   S HPL  
Sbjct: 821  FVKEL--------GSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQA 866

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 867  ----IASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  LF 924


>gi|168494319|ref|ZP_02718462.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
            CDC3059-06]
 gi|183575675|gb|EDT96203.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
            CDC3059-06]
 gi|327389178|gb|EGE87523.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae GA04375]
          Length = 1033

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 292/1022 (28%), Positives = 486/1022 (47%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P+I
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLI 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                 +  L  ++ GYQ+L++L +     ++       
Sbjct: 63   GLEMTVFVDDQEVN-------------LRFLALSSVGYQQLMKLSTAKMQGEK------- 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E + ++            +F+  +  E          G   Y+ +     
Sbjct: 103  TWSVLSQYL-EDIAVIVP----------YFDRVESLE---------LGCDYYIGVYPE-- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 141  ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQD 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+AL+N  ++    S+ L     +          +  +    EL
Sbjct: 190  VFISASSLEKLFQECFPQALDNLEKLISGISYDLDTSLKLPR-------FNPARPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G         + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N 
Sbjct: 243  RERAELG--------LVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 295  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 355  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--D 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +D ET  
Sbjct: 470  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEIDLEDKETLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 590  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRA 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  SFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQV 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++   S+NT     K+ +  IY  L +IKGV    A
Sbjct: 710  MLNSSNS------DYLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKSIKGVSNDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 764  LWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ +              +F  EQ +LG   S HPL  
Sbjct: 821  FVKEL--------GSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQA 866

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 867  ----IASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  LF 924


>gi|237649493|ref|ZP_04523745.1| DNA polymerase III DnaE [Streptococcus pneumoniae CCRI 1974]
          Length = 1033

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 291/1022 (28%), Positives = 485/1022 (47%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                 +  L  ++ GYQ+L++L +     ++       
Sbjct: 63   GLEMTVFVDDQEVN-------------LRFLALSSVGYQQLMKLSTAKMQGEK------- 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E + ++            +F+  +  E          G   Y+ +     
Sbjct: 103  TWSVLSQYL-EDIAVIVP----------YFDRVESLE---------LGCDYYIGVYPE-- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 141  ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQD 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+AL+N  ++    S+ L +   +          +  +    EL
Sbjct: 190  VFISASSLEKLFQERFPQALDNLEKLISGISYDLDISLKLPR-------FNPARPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G         + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N 
Sbjct: 243  RERAELG--------IVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 295  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 355  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--D 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+       +  I  +D ET  
Sbjct: 470  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 590  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDVSAMHEMRA 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  SFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQI 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    A
Sbjct: 710  MLNSANS------DYLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSNDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 764  LWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ +              +F  EQ +LG   S HPL  
Sbjct: 821  FVKEL--------GSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQA 866

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 867  ----IASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  LF 924


>gi|329768254|ref|ZP_08259755.1| hypothetical protein HMPREF0428_01452 [Gemella haemolysans M341]
 gi|328837453|gb|EGF87082.1| hypothetical protein HMPREF0428_01452 [Gemella haemolysans M341]
          Length = 1089

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 302/1032 (29%), Positives = 519/1032 (50%), Gaps = 76/1032 (7%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQVHS+Y LL   +   ++  K+A D Q ++ I D  N++ A++  +++  AGI  I G 
Sbjct: 5    LQVHSAYDLLNSTIKYESLFLKLARDNQRSVVIVDP-NMYGAIKAYKESKRAGINLIQGL 63

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++ +         N             +L  + + + +L+E+ ++   ++  + ++    
Sbjct: 64   EVSLGYGIGFLKFN-------------ILCKSEKMFYKLLEISTK--FMNGEEWTIEDFS 108

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
            S ++E   + ++++       +D                 +   FG      +  +  Y+
Sbjct: 109  SEMKEYSDDFVLIV-------VDELRDSMEFSYLNNLFSNYDFYFGFNESFQVSPYSFYE 161

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                             +V T  S +L++E+Y+   V  A+  +  ++ ++   ++ D +
Sbjct: 162  ----------------NIVYTKPSYYLNKENYQQVIVSRAIRDNKKLNIQELTIISGDEF 205

Query: 254  LKNRSEMVSI--------FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            ++ + +   I             ++ EN   I  +C + L      LP+++  E +DI  
Sbjct: 206  VRKQKDFEEILALGDEELQMIFKKSFENQQNIVDKCQYELNFSGYHLPKYVYGEKEDIYS 265

Query: 306  --EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                +  L      G++          G     Y++R  +EL +I  M F+ YFLIV DF
Sbjct: 266  KFSSKEYLHFLVQKGVK------GKLVGKDLYPYKKRYSYELKIIDEMGFNDYFLIVYDF 319

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++AK N I VG GRGS AGS+  Y L IT+ DPL ++LLFERFLN +R+SMPD DIDF 
Sbjct: 320  VKYAKDNGILVGAGRGSAAGSLVCYLLDITEADPLEYNLLFERFLNKERISMPDIDIDFQ 379

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RRDEVI+YV+ KYG ++VAQIITF + Q+K+A R+  R LQ     +  +   I +  
Sbjct: 380  DTRRDEVIKYVEEKYGQDKVAQIITFTTFQSKSAARESARILQFDEQTLKFISSNISSTR 439

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR-PLSQL 542
                  +        R          R   I+  LE L ++ S HAAGIVI D  PL   
Sbjct: 440  ---TLKECYEMSEELRAFINQSNINKRWFSIALSLENLPKNPSVHAAGIVISDDKPLVNY 496

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
             P+  +      +TQ+ M  +E  GL+K DFLG++ LT++   ++ + +     D++ I 
Sbjct: 497  APLA-ESNMTKYLTQWTMDDVESVGLLKIDFLGIRYLTMVSSVVEEVKKENPTFDITKIN 555

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            + D + Y L     T GIFQ ESSGM++ L  ++P    DI+A+ +LYRPGP+  I VY 
Sbjct: 556  YQDPKVYELFAKGKTEGIFQFESSGMKEKLNLLKPTEFNDIVAMNALYRPGPMAQIEVYV 615

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             RKN +E++V  HP ++ +LK+T GVI+YQEQ+M IA   +  SL+EAD +RRA+ KK K
Sbjct: 616  RRKNKEEQVVYPHPHLEKILKDTYGVIVYQEQIMLIAVNFAHMSLNEADNMRRAVSKKKK 675

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E+++     F+  +   G    +A  +F+L+  FA+YGFNKSHA  Y++++Y+ A++K +
Sbjct: 676  EDLEYYGRIFVEKSVAVGYDLQVAKKLFDLIVTFANYGFNKSHAVVYSMLAYRLAYLKVY 735

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            Y   F+ A +   + + +KI ++ Q+     I ++ P VN    +F V  N I ++L AI
Sbjct: 736  YTKYFMTALLNNVISSEKKINEYKQELNNLGINLVKPDVNRSLSNFSVYKNDIVFALTAI 795

Query: 843  KGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K VG  +   I++   +   +  ++DF  R++ KK++ +   SLV AGALD FGY+R  L
Sbjct: 796  KNVGYRSGYEIVQDRINFGRYLDIDDFLKRMN-KKVDYQAAVSLVKAGALDTFGYNRATL 854

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            ++ +D+     +    N                   + +E+    + + + + E+ V G 
Sbjct: 855  MKKVDDYYSDNRQYINNVRV-------ALSAESGLTLKVEEVEDYSITEKIQMEKEVTGT 907

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            YF  HP+ V K    K      +   A +  + +     ++++++ KT+ G  + ++T +
Sbjct: 908  YFLKHPVQVEKE---KYSYLPLQYIGAELSDSYVE----IITRKEIKTKNGDYMAFLTVN 960

Query: 1022 EPAKEYEANFFP 1033
            +   +Y+   FP
Sbjct: 961  DGKNDYDVTVFP 972


>gi|332076180|gb|EGI86646.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae GA41301]
          Length = 1033

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 291/1022 (28%), Positives = 485/1022 (47%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                 +  L  ++ GYQ+L++L +     ++       
Sbjct: 63   GLEMTVFVDDQEVN-------------LRFLALSSVGYQQLMKLSTAKMQGEK------- 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E + ++            +F+  +  E          G   Y+ +     
Sbjct: 103  TWSVLSQYL-EDIAVIVP----------YFDRVESLE---------LGCDYYIGVYPE-- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 141  ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQD 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+AL+N  ++    S+ L +   +          +  +    EL
Sbjct: 190  VFISASSLEKLFQERFPQALDNLEKLISGISYDLDISLKLPR-------FNPARPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G         + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N 
Sbjct: 243  RERAELG--------LVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 295  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 355  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--D 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+       +  I  +D ET  
Sbjct: 470  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 590  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDVSAMHEMRA 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  SFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQI 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    A
Sbjct: 710  MLNSANS------DYLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSNDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 764  LWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ +              +F  EQ +LG   S HPL  
Sbjct: 821  FVKEL--------GSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQA 866

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 867  ----IASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  LF 924


>gi|149019479|ref|ZP_01834798.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP23-BS72]
 gi|147930854|gb|EDK81834.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP23-BS72]
          Length = 1033

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 292/1022 (28%), Positives = 483/1022 (47%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                 +  L  ++ GYQ+L++L +        K     
Sbjct: 63   GLEMTVFVDDQEVN-------------LRFLALSSVGYQQLMKLSTA-------KMQGVK 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E + ++            +F+  +  E          G   Y+ +     
Sbjct: 103  TWSVLSQYL-EDIAVIVP----------YFDRVESLE---------LGCDYYIGVYPE-- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 141  ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQD 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+AL+N  ++    S+ L     +          +  +    EL
Sbjct: 190  VFISASSLEKLFQECFPQALDNLEKLISGISYDLDTSLKLPR-------FNPARPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G         + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N 
Sbjct: 243  RERAELG--------LVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 295  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 355  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--D 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+       +  I  +D ET  
Sbjct: 470  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 590  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRA 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  SFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQI 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    A
Sbjct: 710  MLNSANS------DYLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSNDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 764  LWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ +              +F  EQ +LG   S HPL  
Sbjct: 821  FVKEL--------GSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQA 866

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 867  ----IASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  LF 924


>gi|225870382|ref|YP_002746329.1| DNA polymerase III alpha subunit [Streptococcus equi subsp. equi
            4047]
 gi|225699786|emb|CAW93588.1| DNA polymerase III alpha subunit [Streptococcus equi subsp. equi
            4047]
          Length = 1036

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 282/1027 (27%), Positives = 469/1027 (45%), Gaps = 104/1027 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L++   +       AI I D +NL+ A  F +     G+QPI
Sbjct: 2    FAQLDTKTVYSFMDSLIDLDHYFKQAKRLGYQAIGIMDQDNLYGAYHFIKGCQRHGLQPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ I +++                   L+     GYQ+L++L +        K S  
Sbjct: 62   LGLEVAITVKEQALTLK-------------LVAKNDTGYQQLLKLSTE-------KMSGD 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL-FGDRLYVNLQRH 189
            + L  L +   EG+ ++   S                       + L      ++ +   
Sbjct: 102  LDLDTLVQYL-EGIAVIVPFSQS--------------------LRDLGLPFDYFIGI--- 137

Query: 190  RGYDRYRESQVVQLAY-THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                     +   L+       L+      +    + E   +L A+  +  ++       
Sbjct: 138  --------DEASDLSKIDSTERLIPLRTVRYFDNAETETLQMLHAIRDNISLADTALVAK 189

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                    +          PEAL N V +    ++       +          +  K  +
Sbjct: 190  D-QFLAPCQEMTAIFQEKCPEALVNLVNLTASIAYHFDTDLKLPR-------FNRDKPAK 241

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             ELR    +GL  +            + Y+ RL  EL +I+ M F  YFLIV D +++ +
Sbjct: 242  EELRELTESGLREKQ--------LWKEPYQFRLAEELAIISDMGFDDYFLIVWDLLRFGR 293

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                 +G GRGS AGS+ AY+L IT IDP++ +LLFERFLN +R SMPD DID     R 
Sbjct: 294  SRGYYMGMGRGSAAGSLVAYSLRITGIDPVKNNLLFERFLNKERYSMPDIDIDLPDIYRS 353

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E + YV+++YG E  AQI+TF +   K A+RDV +   +P  ++  L K I         
Sbjct: 354  EFLHYVRDRYGSEHSAQIVTFSTFGPKQAVRDVFKRFGVPEYELTSLTKKIGF---KDTL 410

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                  +  FR+   +     +  EI++++EG  R  S HAAGIV+ D  L+  +P+ + 
Sbjct: 411  STVYEKNIAFRQTINSRLEFQKAFEIAKRIEGNPRQTSIHAAGIVMSDDHLTNHIPLKKG 470

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHE 607
               D+ VTQ++   +E  GL+K DFLGL+ LTL+QK  + +       +D+  I  +D E
Sbjct: 471  --EDMMVTQYDASAVEANGLLKMDFLGLRNLTLVQKMQEKVVNDYGLSIDIEAINLEDPE 528

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  L     T GIFQ E  G    L+ ++P   E+I+A  SL RPG  D    +  R+ G
Sbjct: 529  TIALFARGDTKGIFQFEQHGAISLLKRIKPTSFEEIVATTSLNRPGASDYTQNFIKRRQG 588

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E I  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK   EM +
Sbjct: 589  QENIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLVEMQR 648

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +E F++GA   G S+  A  +F  + KFA YGFN+SHA AYA +++Q A+ K HYP  F
Sbjct: 649  MQEDFLTGARALGRSEETARLLFARMEKFAGYGFNRSHAFAYAALAFQLAYFKAHYPEVF 708

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
                M            +  DA  F  +    ++NT   + K+  ++IY  L  IKG+  
Sbjct: 709  FDVMMN------YSSSDYITDALDFGFEAAQVTINTIPFNDKIERHKIYMGLKNIKGLPR 762

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              +  I+E   ++PF S+E F   +  K      LE L+  G  D F  +R +++ +L+ 
Sbjct: 763  EFSYWIIE---NRPFTSVESFLCSIPEKYQKTSFLEPLIKIGLFDGFEKNRQKIINNLEG 819

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            +  +   +         ++FA    ++       +    +++ ++  EQ +LG   S HP
Sbjct: 820  LLTFVNEL--------GSLFADSSFSW------VETEDYSAAEKYYFEQDLLGVGMSKHP 865

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKE 1026
            L        +            ++     L   + + +  +T+  G ++ +++ ++  ++
Sbjct: 866  LLAV----AEKSTVAVTPITKLVKDTEATLLVQIDAIRVIRTKSSGQQMAFLSVTDTKQK 921

Query: 1027 YEANFFP 1033
             +   FP
Sbjct: 922  LDVTLFP 928


>gi|325282335|ref|YP_004254876.1| DNA polymerase III, alpha subunit [Deinococcus proteolyticus MRP]
 gi|324314144|gb|ADY25259.1| DNA polymerase III, alpha subunit [Deinococcus proteolyticus MRP]
          Length = 1337

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 313/732 (42%), Positives = 442/732 (60%), Gaps = 19/732 (2%)

Query: 318  GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
            G E    +   A   HA    +R ++EL+VI  M F  YFLIVAD+I WAK  +I VGPG
Sbjct: 459  GTEEPSEETTRAHHRHALVILRRAEYELSVINNMGFPDYFLIVADYINWAKDQDISVGPG 518

Query: 378  RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
            RGSGAGS+ AYA+ IT++DPL F LLFERFLNPDR+SMPDFDIDF   RR EV+ YVQ K
Sbjct: 519  RGSGAGSLVAYAMRITNLDPLEFDLLFERFLNPDRISMPDFDIDFNDARRMEVVEYVQRK 578

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DS 496
            YG ++VAQI TFG++ +KA L+DV R + + Y++VD++ KLIP       SL+   +   
Sbjct: 579  YGEDKVAQIATFGTMASKACLKDVARVMGVEYTKVDKVSKLIPVKFGKSYSLEQAREAVP 638

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
               +   AD  +    E +QKLEGL RHAS HAAG+VIG   L+ LVP+ RD      V 
Sbjct: 639  DIAQMLEADTELRGAYEFAQKLEGLTRHASVHAAGVVIGREDLTNLVPIMRDTSGSGIVC 698

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQK-SLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            Q++MK +E  GLIK DFLGL+TL+ L +        +G+++D   +PFDD  TY L++  
Sbjct: 699  QYDMKSVEDIGLIKMDFLGLRTLSFLDEARRILRESKGIEMDFDTVPFDDEATYELMSRG 758

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
             T G+FQLE +G+  A   ++P  + DIIAL +LYRPGP++NI  Y  R +G E++    
Sbjct: 759  DTKGVFQLEGAGITDASRRLRPRRLADIIALSALYRPGPMENIPTYVRRHHGVEEVTYED 818

Query: 676  -----PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
                   ++P+L+ET G+ +YQEQ+MQIA  ++GYSL  AD+LRRAMGKK   EM KQ++
Sbjct: 819  FPNSEKWLEPILRETYGIPVYQEQIMQIASDVAGYSLGGADLLRRAMGKKDAAEMTKQRQ 878

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ GA  NG+ +  A  +F+LL  FA+YGFNKSH+AAY VI+YQTAW+K +YPVEF+AA
Sbjct: 879  LFVEGAEGNGVPRDEANKLFDLLDAFANYGFNKSHSAAYGVITYQTAWLKANYPVEFMAA 938

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +T+E  + +K+ ++  DAR+ +++++PP +N    DF V    IY+ L AIKG+G    
Sbjct: 939  LLTVERRDSDKVAEYISDARKMDVRVLPPDINRSSSDFAVAGEEIYFGLYAIKGLGEAAV 998

Query: 851  RHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
              I++       F+SL +FCSR+D+K  NR+ LESL+ +GA D FG  R QLL+SLD+  
Sbjct: 999  LRILDERERAGHFESLANFCSRIDNKTCNRKALESLIKSGAFDAFGE-RRQLLESLDDAL 1057

Query: 910  KYAQWVEK--NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + A    K   R     ++         ++             R   E+  LG Y SGHP
Sbjct: 1058 EDAAGTAKINQRAQAGMSMMFALDEVVEERPLRSGVPPFTELERLAAEKEALGLYISGHP 1117

Query: 968  LDVYKPILRKMGIKGYEESVA-------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            L+ ++  LR+       +  +         +     LA M+   Q+K T+ G  +     
Sbjct: 1118 LEQHEG-LREAASCRIADLDSWFEVQPKKGKRQKAVLAGMIEGVQKKPTKSGGMMARFIL 1176

Query: 1021 SEPAKEYEANFF 1032
            ++ + + E   F
Sbjct: 1177 ADESGQIELVAF 1188



 Score =  302 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 83/348 (23%), Positives = 148/348 (42%), Gaps = 13/348 (3%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAA---DQQPA-IAITDTNNLFSALEFSQK 61
           EK   F HL  H+ YSLL+GA  L ++L        +   A +A+TD  N+  A+ F   
Sbjct: 27  EKPKRFAHLHQHTQYSLLDGAAKLKDLLKWAKETSPEGSDAALAMTDHGNMHGAVHFYNY 86

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTN-QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
           A  AG++PI+G +  +      +    +G+     +  + LL    EGYQ L  L SR Y
Sbjct: 87  AQDAGVKPILGYEAYVVPGFGTRRDRTRGQDGEKGIYHLTLLARDFEGYQNLCRLSSRGY 146

Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
             +      RI    LQE  ++G+I  +G     + +         A++RLL ++ LFG+
Sbjct: 147 T-EGYYYKPRIDHELLQE-HSKGVIAFSGCLGSEVQQLLLMGRHDEAKERLLWYRDLFGE 204

Query: 181 RLYVNLQRHRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y+ +Q H   ++ + + ++ Q A    + +VATN+  ++ +ED   H+ L+A+     
Sbjct: 205 NYYIEIQNHGLKEQDQNNPILRQWAQELGIGMVATNDGHYVKKEDATPHETLLAIQTKAT 264

Query: 240 VSQKDRPRVTPDHYLKN---RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
           ++ ++R +   D +        +     SD  E + +          +           +
Sbjct: 265 LADENRFKFPCDEFYVKSLEEMQAALPVSDWGEEVFDNAANIADLCNVELPVGKKRVYQM 324

Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            +      +    E+R +  AG+  R      A     +DY  R   E
Sbjct: 325 PQLPIPEGRTMAEEMRVQTYAGMMRRYPAH--ATEALLRDYAARSLTE 370


>gi|325963431|ref|YP_004241337.1| DNA-directed DNA polymerase III PolC [Arthrobacter phenanthrenivorans
            Sphe3]
 gi|323469518|gb|ADX73203.1| DNA-directed DNA polymerase III PolC [Arthrobacter phenanthrenivorans
            Sphe3]
          Length = 1162

 Score =  450 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 259/1120 (23%), Positives = 464/1120 (41%), Gaps = 133/1120 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDK----------IAADQQPAIAITDTNNLFSALEFS 59
            SF HL V +++S   G      +                        TD + L+  ++  
Sbjct: 2    SFTHLHVSTAFSAHYGVSWPEELAQAAAADGATALAC----------TDRDGLYGTIKHL 51

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS---TAEGYQRLIELV 116
            +   AAGI PI+G  L +   D       G         +V+L        GY+ L  L+
Sbjct: 52   KACMAAGIDPIVGVDLTVFDDD-------GDHRTQVAGRVVVLARGNNNGAGYRALCRLI 104

Query: 117  SRMYLLDQGKQS----VRICLSWLQ------EIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
            S  +    GK      V +  + L       +     L +L G     + RA        
Sbjct: 105  SDAHARTSGKSGGAVPVAVTRAELASRTLDPQTLKPVLAVLVG-PHSDVGRAMGGRRYLR 163

Query: 167  AEKRLLTFKKLFG-DRLYVNL-----QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFL 220
                   +        L   +                 ++++LA  H++P V TN   + 
Sbjct: 164  PRTLFKQWLDAMPAGTLVAEIVSQLSMPGTPLSTAHAVRMLKLAEEHQVPAVLTNAVRYC 223

Query: 221  SEEDYEAHDVLMAVAHSTVVSQ---KDRPRVTPDHYLKNRSEMVSIFSDLPEA------- 270
            + +     DVL +      + +   +   + T   +LK+ +EM+ +  ++  A       
Sbjct: 224  AADGAPTADVLDSARTLKSLPELAEEPLLQPTGQGWLKSSAEMLQLGKEIISAAGYGAAD 283

Query: 271  ---LENTVEIARRCSFILQVHAPILPRFIEKECD--DIQKEEENELRNKAVAGLEVRLAQ 325
               L    E       I         + +  E     I ++   EL  +  AG+  R   
Sbjct: 284  LKQLMAQTEALADLCRIDPASDMGWKQPVVPEASVIGISQDPHLELVQRCQAGIGRRFPG 343

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                 G   +    RL+ EL +I  + FS YFL VA+  +  +   +     RGSGA S+
Sbjct: 344  ---ISGADGEKMLARLEHELGIIRNLGFSSYFLTVAEVSRMIQDMGVRAA-ARGSGASSL 399

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
              Y + ++ ++PL+  L+FERFL+ DR ++PD DID     R  V   +  ++G ERV  
Sbjct: 400  VNYLIDVSQVNPLQHDLIFERFLSQDRATLPDIDIDVESAERHNVYHRIFERFGAERVTL 459

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
            +      +A+ A+RD G AL M   +V  + K +    A     +A+ +    RE     
Sbjct: 460  MSMQNGYRARGAVRDAGLALGMDDGEVGEIAKQLWRFSARKF-REALQEKPELREFAGRV 518

Query: 506  PSVDRLLEI--------SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
               D             +++L+ L RH S H  G+++GD  L    P+       LP++Q
Sbjct: 519  EQRDMHGNQQLDLLVDLTERLDRLPRHISMHPCGVILGDATLLDRTPVQ-PSGLGLPMSQ 577

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV----------------------- 594
            F+   ++  G++K D LG++  + +  ++  + +                          
Sbjct: 578  FDKHDMDPMGMLKLDVLGVRMQSAMAFAVREIIRIHPSKQEVVAAGGHSSGMDGTGPEYI 637

Query: 595  ----KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                ++DL+ +P DD  T+ L+ +  TLG FQ+ES G R+ +  M P    D+I  +SL+
Sbjct: 638  AENGRIDLNAVPLDDEPTFELIRSTHTLGCFQIESPGQRELIGKMAPREFNDLIIDISLF 697

Query: 651  RPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+ + +   +   ++G    V  HPL+ P+L+ET GV ++ EQ+++   +++G  L+
Sbjct: 698  RPGPMKSDMVRPFLEHRHGFAPEVYPHPLLKPVLQETHGVTVFHEQILRTFDVMTGCGLA 757

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            +AD  RRA+  +      ++  R    A + G    +   ++E L  FA +GF K+H AA
Sbjct: 758  KADEFRRALSSEAGVSQVEEYFRMH--AKEKGFQPDVVDKVWETLKSFASFGFCKAHGAA 815

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            +AV +YQ+AW+KTH+P  FLA     +     K +    +AR+  I I+P  +N    ++
Sbjct: 816  FAVPTYQSAWLKTHHPEAFLAGLWEHDPGMYPK-RLLVAEARRLGIPILPLDINRSKAEY 874

Query: 829  KVGD---------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            +V             I  SL  I G+     + I+   A +P+DSL D  +R    ++++
Sbjct: 875  RVEKITSGPDAGKLGIRLSLNGIYGLSAAELKRIV---AGQPYDSLADLRNR---SRVSK 928

Query: 880  RVLESLVFAGALDCFG------YSRMQLLQSLDNIQKYAQWVEK-NRTNKHENIFAHEKG 932
              ++ L   GA D          +R  L+Q L  +Q      +         ++   +  
Sbjct: 929  PSIKRLAQLGAFDSLHREAGGTANRADLVQHLQKLQGSNSGRKGVEVLEGQLSLPLGDVE 988

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
              + K  L      +       E  ++    S H +D ++P+L ++G+   ++ +    G
Sbjct: 989  LRNVKPGLPAL---SLVDNVRAELDLMAVDVSSHLMDSHRPMLNRLGVVTADKLLGLRNG 1045

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + +A + V+ Q    R G R+ +++  +     ++ FF
Sbjct: 1046 TEVLVAGVRVATQTPPMRGGRRVVFISIDDGTGCIDSVFF 1085


>gi|167617801|ref|ZP_02386432.1| error-prone DNA polymerase [Burkholderia thailandensis Bt4]
          Length = 852

 Score =  450 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 234/867 (26%), Positives = 380/867 (43%), Gaps = 51/867 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++        IAITD  +L  A      A    + 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAKKHGYRGIAITDECSLAGAPRMHVAAKGHELP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G   D+   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFDVTPDD----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIM--LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            R+    L     E + +  +    +  +        + V + +L  F  LFG+R  + L
Sbjct: 124 YRLTPRMLAAPPPEFIHLRGVPDCFAILVPTY--PARADVLDAQLAWFGALFGERARLGL 181

Query: 187 -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q  R  D     QV        + +VA  +    +       D + A+        +  
Sbjct: 182 VQLQRALDGAHREQVRAAGERRGMRIVALGDVTMHTRSCKPLQDTMTAIRLGMP-IGECG 240

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + P+     R+          +AL  T  +   C F L       P  I         
Sbjct: 241 HALAPNAEQHLRTRQRIAQLFPADALAQTCRMLDACHFSLDELRYEYPHEIVPAG----H 296

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + L  +  AG   R   G        +  RQR+ FEL +IA +K+  YFL V D ++
Sbjct: 297 TPTSYLAQETWAGARRRYPDGV------PEAVRQRIGFELALIADLKYEPYFLTVYDIVE 350

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+  +I    GRGS A SV  Y L +T+++P + +LLFERF++ +R   PD D+DF   
Sbjct: 351 YARSKDIL-CQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFISRERGEPPDIDVDFEHQ 409

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K        
Sbjct: 410 RREEVIQYLYGKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGS 469

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              L   A            P +    +++ +L    RH S H+ G V+    L++LVP+
Sbjct: 470 RALLARFASV----GLDPDVPLIRTWAKLAARLLNFPRHLSQHSGGFVVSRGKLTRLVPV 525

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDL 598
                    V Q++   +E  GL+K D L L  L+ L ++ D +               L
Sbjct: 526 ENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRL 585

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI   
Sbjct: 586 EHIPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGG 645

Query: 659 VVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            V+   +  +        +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD
Sbjct: 646 AVHPYLERRRIAAGEVEGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEAD 705

Query: 712 VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            LRRAM     K ++ K   R + G  + G S+  A  IFE +  F +YGF +SHAA++A
Sbjct: 706 ALRRAMAAWKRKGDLGKYHRRIVDGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFA 765

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  +
Sbjct: 766 KLAYASSWLKCHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSDWEASL 825

Query: 831 G----------DNRIYYSLAAIKGVGT 847
                         +   L+ ++G+  
Sbjct: 826 EARPGEAPPDGRPAVRLGLSLVRGMSE 852


>gi|76363557|sp|P0C0F2|DPO3A_STRPY RecName: Full=DNA polymerase III subunit alpha
 gi|9789551|gb|AAF98350.1| DNA polymerase III alpha subunit [Streptococcus pyogenes]
          Length = 1034

 Score =  450 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 285/1026 (27%), Positives = 495/1026 (48%), Gaps = 104/1026 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + LN+  ++        I I D +NL+ A  F +     G+QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFIKGCQKNGLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +++I  Q+   +             + L+    +GY +L+++ +        K S +
Sbjct: 62   LGLEIEILYQERQVL-------------LNLIAQNTQGYHQLLKISTA-------KMSGK 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + + +  +   EG+ ++   S G  D                          Y+ +    
Sbjct: 102  LHMDYFCQ-HLEGIAVII-PSKGWSDTLVV------------------PFDYYMGV---- 137

Query: 191  GYDRYRESQVVQL-AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              D+Y  + +  + +    +PL       + +++D E   +L A+  + +   +     +
Sbjct: 138  --DQY--TDLSHMDSKRQLIPL---RTVRYFAQDDMETLHMLHAIRDN-LSLAETPVVES 189

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                   +       +  P+AL+N  ++     +    +  +          +  K  + 
Sbjct: 190  DQELADCQQLTAFYQTHCPQALQNLEDLVSGIYYDFDTNLKLPH-------FNRDKSAKQ 242

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL++   AGL+ +        G   + Y+ RL  EL +I+ M F  YFLIV D +++ + 
Sbjct: 243  ELQDLTEAGLKEK--------GLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGRS 294

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R E
Sbjct: 295  KGYYMGMGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDIYRSE 354

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             +RYV+N+YG +  AQI+TF +     A+RDV +   +P  ++  L K I          
Sbjct: 355  FLRYVRNRYGSDHSAQIVTFSTFG--QAIRDVFKRFGVPEYELTNLTKKIGF---KDSLA 409

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                    FR+   +     +   I++++EG  R  S HAAGIV+ D  L+  +P+    
Sbjct: 410  TVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIHAAGIVMSDDALTNHIPL--KS 467

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHET 608
              D+ +TQ++   +E  GL+K DFLGL+ LT +QK  + +A+    ++D++ I  +D +T
Sbjct: 468  GDDMMITQYDAHAVEANGLLKMDFLGLRNLTFVQKMQEKVAKDYGCQIDITAIDLEDPQT 527

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G    L+ ++P   E+I+A  SL RPG  D    +  R+ G+
Sbjct: 528  LALFAKGDTKGIFQFEQNGAINLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQ 587

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM K 
Sbjct: 588  EKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQKM 647

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +E FI+ A   G ++  A  +F+ + KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 648  EEDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFY 707

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               M            +  DA + + Q+   ++N+     K+  ++IY  L  IKG+   
Sbjct: 708  DIMMN------YSSSDYITDALESDFQVAQVTINSIPYTDKIEASKIYMGLKNIKGLPRD 761

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I+E     PF+S+EDF +R   K   +  LE L+  G  DCF  +R ++L +LD +
Sbjct: 762  FAYWIIEQR---PFNSVEDFLTRTPEKYQKKVFLEPLIKIGLFDCFEPNRKKILDNLDGL 818

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +   +         ++F+    ++ D          + + ++  EQ ++G   S HPL
Sbjct: 819  LVFVNEL--------GSLFSDSSFSWVDT------KDYSVTEKYSLEQEIVGVGMSKHPL 864

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEY 1027
                  + +   + +      ++ +   +   + S +  +T+  G ++ +++ ++  K+ 
Sbjct: 865  ----IDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRIIRTKTSGQQMAFLSVNDTKKKL 920

Query: 1028 EANFFP 1033
            +   FP
Sbjct: 921  DVTLFP 926


>gi|168482961|ref|ZP_02707913.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
            CDC1873-00]
 gi|172043523|gb|EDT51569.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
            CDC1873-00]
          Length = 1033

 Score =  450 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 291/1022 (28%), Positives = 487/1022 (47%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                 +  L  ++ GYQ+L++L +     ++       
Sbjct: 63   GLEMTVFVDDQEVN-------------LRFLALSSVGYQQLMKLSTAKMQGEK------- 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   +  ++++           +F+  +  E          G   Y+ +     
Sbjct: 103  TWSVLSQYLEDIAVIVS-----------YFDRVESLE---------LGCDYYIGVYPE-- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 141  ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQD 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+AL+N  ++    S+ L     +          +  +    EL
Sbjct: 190  VFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLKLPR-------FNPARPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G         + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N 
Sbjct: 243  RERAELG--------LVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 295  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 355  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--D 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +D ET  
Sbjct: 470  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEIDLEDKETLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 590  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRA 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  SFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQV 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++   S+NT     K+ +  IY  L +IKGV    A
Sbjct: 710  MLNSSNS------DYLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKSIKGVSNDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 764  LWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++       K        +F  EQ +LG   S HPL  
Sbjct: 821  FVKEL--------GSLFGDAIYSWQ------KSEDWTEQEKFYMEQELLGIGVSKHPLQA 866

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 867  ----IASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQVDDSKKKLDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  LF 924


>gi|225861211|ref|YP_002742720.1| DNA polymerase III DnaE [Streptococcus pneumoniae Taiwan19F-14]
 gi|298254248|ref|ZP_06977834.1| DNA polymerase III DnaE [Streptococcus pneumoniae str. Canada
            MDR_19A]
 gi|225728112|gb|ACO23963.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
            Taiwan19F-14]
          Length = 1033

 Score =  450 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 291/1022 (28%), Positives = 486/1022 (47%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                 +  L  ++ GYQ+L++L +     ++       
Sbjct: 63   GLEMTVFVDDQEVN-------------LRFLALSSVGYQQLMKLSTAKMQGEK------- 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E + ++            +F+  +  E          G   Y+ +     
Sbjct: 103  TWSVLSQYL-EDIAVIVP----------YFDRVESLE---------LGCDYYIGVYPE-- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 141  ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQD 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+AL+N  ++    S+ L     +          +  +    EL
Sbjct: 190  VFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLKLPR-------FNPARPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G         + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N 
Sbjct: 243  RERAELG--------LVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 295  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 355  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--D 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +D ET  
Sbjct: 470  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEIDLEDKETLD 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 590  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRV 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  SFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQV 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++   S+NT     K+ +  IY  L +IKGV    A
Sbjct: 710  MLNSSNS------DYLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKSIKGVSNDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 764  LWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ +              +F  EQ +LG   S HPL  
Sbjct: 821  FVKEL--------GSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQA 866

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 867  ----IASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  LF 924


>gi|194397529|ref|YP_002037532.1| DNA polymerase III DnaE [Streptococcus pneumoniae G54]
 gi|194357196|gb|ACF55644.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae G54]
          Length = 1033

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 290/1022 (28%), Positives = 481/1022 (47%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                 +  L  ++ GYQ+L++L +     ++       
Sbjct: 63   GLEMTVFVDDQEVN-------------LRFLALSSVGYQQLMKLSTAKMQGEK------- 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E + ++            +F+  +  E          G   Y+ +     
Sbjct: 103  TWSVLSQYL-EDIAVIVP----------YFDRVESLE---------LGCDYYIGVYPE-- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 141  ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQD 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++             P+AL+N  ++    S+ L     +          +  +    EL
Sbjct: 190  VFISASFLEKLFQERFPQALDNLEKLISGISYDLDTSLKLPR-------FNPARPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G         + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N 
Sbjct: 243  RERAELG--------LVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 295  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 355  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--D 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+       +  I  +D ET  
Sbjct: 470  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 590  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRA 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  SFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQI 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    A
Sbjct: 710  MLNSANS------DYLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSNDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E     P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 764  LWIIEHR---PYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ +              +F  EQ +LG   S HPL  
Sbjct: 821  FVKEL--------GSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQA 866

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 867  ----IASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  LF 924


>gi|148988324|ref|ZP_01819771.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP6-BS73]
 gi|148993709|ref|ZP_01823156.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP9-BS68]
 gi|168490330|ref|ZP_02714529.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP195]
 gi|147926005|gb|EDK77079.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP6-BS73]
 gi|147927789|gb|EDK78812.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP9-BS68]
 gi|183571329|gb|EDT91857.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP195]
 gi|332073225|gb|EGI83704.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae GA17570]
          Length = 1033

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 291/1022 (28%), Positives = 485/1022 (47%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                ++  L  ++ GYQ+L++L +     ++       
Sbjct: 63   GLEMTVFVDD-------------QGVNLRFLALSSVGYQQLMKLSTAKMQGEK------- 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E + ++            +F+  +  E          G   Y+ +     
Sbjct: 103  TWSVLSQYL-EDIAVIVP----------YFDRVESLE---------LGCDYYIGVYPE-- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 141  ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQD 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+AL+N  ++    S+ L     +          +  +    EL
Sbjct: 190  VFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLKLPR-------FNPARPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G         + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N 
Sbjct: 243  RERAELG--------LVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGQSNG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 295  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 355  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--D 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+       +  I  +D ET  
Sbjct: 470  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ L+G+SL +AD+LRRAMGKK    M + + 
Sbjct: 590  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRLAGFSLGKADILRRAMGKKDASAMHEMRA 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  SFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQV 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++   S+NT     K+ +  IY  L +IKGV    A
Sbjct: 710  MLNSSNS------DYLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKSIKGVSNDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 764  LWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ +              +F  EQ +LG   S HPL  
Sbjct: 821  FVKEL--------GSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQA 866

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 867  ----IASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  LF 924


>gi|168490982|ref|ZP_02715125.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
            CDC0288-04]
 gi|183574706|gb|EDT95234.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
            CDC0288-04]
          Length = 1033

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 288/1022 (28%), Positives = 483/1022 (47%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                 +  L  ++ GYQ+L++L +     ++       
Sbjct: 63   GLEMTVFVDDQEVN-------------LRFLALSSVGYQQLMKLSTAKMQGEK------- 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E + ++            +F+  +  E          G   Y+ +     
Sbjct: 103  TWSVLSQYL-EDIAVIVP----------YFDRVESLE---------LGCDYYIGVYPE-- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 141  ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQD 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+AL+N  ++    S+ L     +          +  +    EL
Sbjct: 190  VFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLKLPR-------FNPARPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G         + KG  +++Y+ RL+ EL+VI  M F  YFL+V D +++ + N 
Sbjct: 243  RERAELG--------LVQKGLTSKEYQDRLEQELSVIHDMGFDDYFLVVWDLLRFGRSNG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 295  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 355  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  +I+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLQFRQQINSKLEYQKAFDIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--D 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+       +  I  +D ET  
Sbjct: 470  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 590  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRA 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  SFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQV 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++   S+NT     K+ +  IY  L +IKGV    A
Sbjct: 710  MLNSSNS------DYLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKSIKGVSNDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 764  LWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ +              +F  EQ +LG   S HPL  
Sbjct: 821  FVKEL--------GSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQA 866

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 867  ----IASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  LF 924


>gi|298503097|ref|YP_003725037.1| DNA polymerase III DnaE [Streptococcus pneumoniae TCH8431/19A]
 gi|298238692|gb|ADI69823.1| DNA polymerase III DnaE [Streptococcus pneumoniae TCH8431/19A]
          Length = 1042

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 291/1022 (28%), Positives = 486/1022 (47%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 12   AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 71

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                 +  L  ++ GYQ+L++L +     ++       
Sbjct: 72   GLEMTVFVDDQEVN-------------LRFLALSSVGYQQLMKLSTAKMQGEK------- 111

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E + ++            +F+  +  E          G   Y+ +     
Sbjct: 112  TWSVLSQYL-EDIAVIVP----------YFDRVESLE---------LGCDYYIGVYPE-- 149

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 150  ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQD 198

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+AL+N  ++    S+ L     +          +  +    EL
Sbjct: 199  VFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLKLPR-------FNPARPAVEEL 251

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G         + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N 
Sbjct: 252  RERAELG--------LVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNG 303

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 304  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 363

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 364  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 420

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 421  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--D 478

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +D ET  
Sbjct: 479  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEIDLEDKETLD 538

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 539  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 598

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 599  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRV 658

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 659  SFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQV 718

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++   S+NT     K+ +  IY  L +IKGV    A
Sbjct: 719  MLNSSNS------DYLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKSIKGVSNDLA 772

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 773  LWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE 829

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ +              +F  EQ +LG   S HPL  
Sbjct: 830  FVKEL--------GSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQA 875

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 876  ----IASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVT 931

Query: 1031 FF 1032
             F
Sbjct: 932  LF 933


>gi|289167846|ref|YP_003446115.1| DNA-polymerase III alpha-chain [Streptococcus mitis B6]
 gi|288907413|emb|CBJ22250.1| DNA-polymerase III alpha-chain [Streptococcus mitis B6]
          Length = 1042

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 290/1022 (28%), Positives = 479/1022 (46%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S++  +          +A+ D +NL+ A +F +     GI P++
Sbjct: 12   AQLDTKTVYSFMESVISIDKYVRVAKDYGYTHLAMMDIDNLYGAFDFLEVTKKYGIHPLL 71

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++++ + D                 +  L  ++ GYQ+L++L +     ++       
Sbjct: 72   GLEMNVLVDDKDVN-------------LRFLALSSVGYQQLMKLSTAKMQGEK------- 111

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E + ++                     + L       G   Y+ +     
Sbjct: 112  SWSVLSQYL-EDIAVIVP--------------YFEELELLN-----LGCDYYIGVYPE-- 149

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++          +D E   VL A+  + +  ++   R   D
Sbjct: 150  ----------TLASEFHYPILPLYRVNTFESKDREVLQVLTAIKEN-LPLREVPLRSRQD 198

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+ALEN  ++     + L     +          +  +    EL
Sbjct: 199  VFISASSLEKLFQERFPQALENLEKLISGIYYDLDTSLKLPR-------FNPARPAVEEL 251

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  GL          KG   ++Y+ RLD EL VI  M F  YFL+V D +++ + N 
Sbjct: 252  RERAELGLAQ--------KGLTGKEYQDRLDQELAVIHDMGFDDYFLVVWDLLRFGRSNG 303

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 304  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 363

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 364  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFSVPEYELSAITKKISFRDN---LKSA 420

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 421  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTDYIPLKHG--D 478

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+       +  I  +D++T  
Sbjct: 479  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDNDTLA 538

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 539  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 598

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P ++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 599  VTVLDPALEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRA 658

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 659  SFIQGSIEAGHTAEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQI 718

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++ P S+NT     K+ +  IY  L +IKG+    A
Sbjct: 719  MLNSANS------DYLSDALEAGFEVAPLSINTIPYHDKIANKSIYLGLKSIKGLSKDLA 772

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E     P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 773  LWIIEHR---PYSNIEDFLAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE 829

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ D              +F  EQ +LG   S HPL  
Sbjct: 830  FVKVL--------GSLFGETIYSWLDS------EDWTEQEKFYMEQELLGVGVSKHPLQA 875

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 876  ----IASKAIYPITPISNLSENSYAIILIEVQKIKVIRTKKGENMAFLQVDDSKKKLDVT 931

Query: 1031 FF 1032
             F
Sbjct: 932  LF 933


>gi|221231672|ref|YP_002510824.1| DNA polymerase III alpha subunit [Streptococcus pneumoniae ATCC
            700669]
 gi|220674132|emb|CAR68651.1| DNA polymerase III alpha subunit [Streptococcus pneumoniae ATCC
            700669]
          Length = 1033

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 292/1022 (28%), Positives = 483/1022 (47%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                 +  L  ++ GYQ+L++L +        K     
Sbjct: 63   GLEMIVFVDDQEVN-------------LRFLALSSVGYQQLMKLSTA-------KMQGVK 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E + ++            +F+  +  E          G   Y+ +     
Sbjct: 103  TWSVLSQYL-EDIAVIVP----------YFDRVESLE---------LGCDYYIGVYPE-- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 141  ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQD 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+AL+N  ++    S+ L     +          +  +    EL
Sbjct: 190  VFISASSLEKLFQECFPQALDNLEKLISGISYDLDTSLKLPR-------FNPARPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G         + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N 
Sbjct: 243  RERAELG--------LVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 295  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 355  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--D 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+       +  I  +D ET  
Sbjct: 470  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 590  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRA 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  SFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQI 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    A
Sbjct: 710  MLNSANS------DYLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSNDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 764  LWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ +              +F  EQ +LG   S HPL  
Sbjct: 821  FVKEL--------GSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQA 866

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 867  ----IASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  LF 924


>gi|301794047|emb|CBW36446.1| DNA polymerase III alpha subunit [Streptococcus pneumoniae INV104]
          Length = 1033

 Score =  449 bits (1155), Expect = e-123,   Method: Composition-based stats.
 Identities = 291/1022 (28%), Positives = 485/1022 (47%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                ++  L  ++ GYQ+L++L +     ++       
Sbjct: 63   GLEMTVFVDD-------------QGVNLRFLALSSVGYQQLMKLSTAKMQGEK------- 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E + ++            +F+  +  E          G   Y+ +     
Sbjct: 103  TWSVLSQYL-EDIAVIVP----------YFDRVESLE---------LGCDYYIGVYPE-- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 141  ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQD 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+AL+N  ++    S+ L     +          +  +    EL
Sbjct: 190  VFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLKLPR-------FNPARPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G         + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N 
Sbjct: 243  RERAELG--------LVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 295  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 355  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--D 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+       +  I  +D ET  
Sbjct: 470  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ L+G+SL +AD+LRRAMGKK    M + + 
Sbjct: 590  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRLAGFSLGKADILRRAMGKKDASAMHEMRA 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  SFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQV 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++   S+NT     K+ +  IY  L +IKGV    A
Sbjct: 710  MLNSSNS------DYLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKSIKGVSNDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 764  LWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ +              +F  EQ +LG   S HPL  
Sbjct: 821  FVKEL--------GSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQA 866

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 867  ----IASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  LF 924


>gi|167844169|ref|ZP_02469677.1| error-prone DNA polymerase [Burkholderia pseudomallei B7210]
          Length = 852

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 241/867 (27%), Positives = 382/867 (44%), Gaps = 51/867 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129 VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            R+    L         L  +    +  +        + V + +L  F  LFG+R  + L
Sbjct: 124 YRLTPRMLAAPPRALAHLRGVPDCFAILVPTY--PARADVLDAQLAWFDALFGERARLGL 181

Query: 187 -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q  R  D     QV        + +VA  +            D + A+        +  
Sbjct: 182 VQLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMP-IAECG 240

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + P+     R+          +AL  T  +   C F L       P  I         
Sbjct: 241 HALAPNGEQHLRTRQRIAQLFPADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----H 296

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D ++
Sbjct: 297 TSTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVK 350

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+  +I    GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   
Sbjct: 351 YARSKDIL-CQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQ 409

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K        
Sbjct: 410 RREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGS 469

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              L   A            P +    EI+ +L    RH S H+ G V+    L++LVP+
Sbjct: 470 RDLLARFASV----GLDPEVPLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPV 525

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDL 598
                    V Q++   +E  GL+K D L L  L+ L ++ D +               L
Sbjct: 526 ENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRL 585

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI   
Sbjct: 586 ERIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGG 645

Query: 659 VVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            V+   +  +        +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD
Sbjct: 646 AVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEAD 705

Query: 712 VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            LRRAM     K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A
Sbjct: 706 ALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFA 765

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  +
Sbjct: 766 KLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASL 825

Query: 831 G----------DNRIYYSLAAIKGVGT 847
                         +   L+ ++G+G 
Sbjct: 826 EAQPGAAPPDGRPAVRLGLSLVRGLGE 852


>gi|15900778|ref|NP_345382.1| DNA polymerase III DnaE [Streptococcus pneumoniae TIGR4]
 gi|14972370|gb|AAK75022.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae TIGR4]
          Length = 1042

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 291/1022 (28%), Positives = 485/1022 (47%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 12   AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 71

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                ++  L  ++ GYQ+L++L +     ++       
Sbjct: 72   GLEMTVFVDD-------------QGVNLRFLALSSVGYQQLMKLSTAKMQGEK------- 111

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E + ++            +F+  +  E          G   Y+ +     
Sbjct: 112  TWSVLSQYL-EDIAVIVP----------YFDRVESLE---------LGCDYYIGVYPE-- 149

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 150  ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQD 198

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+AL+N  ++    S+ L     +          +  +    EL
Sbjct: 199  VFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLKLPR-------FNPARPAVEEL 251

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G         + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N 
Sbjct: 252  RERAELG--------LVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGQSNG 303

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 304  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 363

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 364  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 420

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 421  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--D 478

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+       +  I  +D ET  
Sbjct: 479  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETLA 538

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 539  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 598

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ L+G+SL +AD+LRRAMGKK    M + + 
Sbjct: 599  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRLAGFSLGKADILRRAMGKKDASAMHEMRA 658

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 659  SFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQV 718

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++   S+NT     K+ +  IY  L +IKGV    A
Sbjct: 719  MLNSSNS------DYLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKSIKGVSNDLA 772

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 773  LWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE 829

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ +              +F  EQ +LG   S HPL  
Sbjct: 830  FVKEL--------GSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQA 875

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 876  ----IASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVT 931

Query: 1031 FF 1032
             F
Sbjct: 932  LF 933


>gi|116516844|ref|YP_816273.1| DNA polymerase III DnaE [Streptococcus pneumoniae D39]
 gi|116077420|gb|ABJ55140.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae D39]
          Length = 1033

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 291/1022 (28%), Positives = 486/1022 (47%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                 +  L  ++ GYQ+L++L +     ++       
Sbjct: 63   GLEMTVFVDDQEVN-------------LRFLALSSVGYQQLMKLSTAKMQGEK------- 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E + ++            +F+  +  E          G   Y+ +     
Sbjct: 103  TWSVLSQYL-EDIAVIVP----------YFDRVESLE---------LGCDYYIGVYPE-- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 141  ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQD 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+AL+N  ++    S+ L     +          +  +    EL
Sbjct: 190  VFISASSLEKLFQECFPQALDNLEKLISGISYDLDTSLKLPR-------FNPARPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G         + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N 
Sbjct: 243  RERAELG--------LVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 295  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 355  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--D 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +D ET  
Sbjct: 470  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEIDLEDKETLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 590  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRA 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  SFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQV 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++   S+NT     K+ +  IY  L +IKGV    A
Sbjct: 710  MLNSSNS------DYLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKSIKGVSNDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 764  LWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ +              +F  EQ +LG   S HPL  
Sbjct: 821  FVKEL--------GSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQA 866

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 867  ----IASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  LF 924


>gi|306833377|ref|ZP_07466504.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus bovis
            ATCC 700338]
 gi|304424147|gb|EFM27286.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus bovis
            ATCC 700338]
          Length = 1035

 Score =  449 bits (1154), Expect = e-123,   Method: Composition-based stats.
 Identities = 283/1025 (27%), Positives = 482/1025 (47%), Gaps = 101/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   +    +     + I D +NL++A  F ++A    +QP+
Sbjct: 2    FAQLDTKTVYSFMDSLIDLEGYVKAAKSLGYQTVGIMDKDNLYAAFHFIEEAKKQSLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +L   +++ L +             + LL     GY+ L+++ S+            
Sbjct: 62   VGLELSFAVEETLSLK------------LYLLAQDTTGYKNLMKISSKQMSSG------- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L  L          LTG        A      +  E   L F        Y+ +  + 
Sbjct: 103  IQLGELFNY-------LTG-------VAIVVPYFEELEALSLPF------DYYIGVDVNS 142

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                            +E P+       +    + EA  +L A+  +  +     P    
Sbjct: 143  PQ------------KAYEKPIFPLYTVRYFETNEVEALHMLHAIRDNISLKDAP-PAPQG 189

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             + L       +     P+ALEN  ++     +       +          + QK  + E
Sbjct: 190  QNLLACDILTQAFRETFPQALENQEKLISNIHYEFDTDLKLPR-------FNRQKLAQEE 242

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L  +  AGL         AK      Y++RL+ EL++I +M F  YFLIV D +++ + +
Sbjct: 243  LIERTEAGLR--------AKNLWLPAYQERLEKELSIIHKMGFDDYFLIVWDLLRFGRSH 294

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ +YAL IT IDP++ +LLFERFLN +R SMPD DID     R E 
Sbjct: 295  GYYMGMGRGSAAGSLVSYALDITGIDPVKNNLLFERFLNEERYSMPDIDIDLPDVYRSEF 354

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV+++YG    AQI+TF +  AK A+RDV +    P  ++  + K I           
Sbjct: 355  LHYVRDRYGSLHSAQIVTFSTFGAKQAIRDVFKRFGAPEHELTNITKKISF---RDTLTS 411

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+   +     +   I++++EG  R  S HAAG+V+ D  L++ +P+     
Sbjct: 412  VYDKNLSFRQIINSKIEYQKAFAIAKRIEGNPRQTSIHAAGVVMSDDNLTEHIPL--KAG 469

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             D+ +TQ++ + +E  GL+K DFLGL+ LT +Q+  + +A+   V +D+  I  +D +T 
Sbjct: 470  EDMMITQYDAQAVEANGLLKMDFLGLRNLTFVQRMQEKVAKDYGVTIDIKSIDLEDKKTL 529

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E +G    L+ +QP   EDI+A  SL RPG  D    +  R+ G+E
Sbjct: 530  ELFAAGKTKGIFQFEQAGAINLLKRIQPCRFEDIVATTSLNRPGASDYTENFIKRRFGQE 589

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  I PL+  +L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  ++M K +
Sbjct: 590  EVDLIDPLVASILEPTYGIMLYQEQVMQIAQIYAGFTLGKADLLRRAMSKKKVDDMQKME 649

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              F+ GA + G     A ++F  +AKFA YGFN+SHA AY+ +++Q A+ K HYP  F  
Sbjct: 650  SDFLEGAQQLGRPLEAAKDLFSRMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAVFYD 709

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +            +  DA     ++    +NT   + K+ D  IY  L  ++GV    
Sbjct: 710  IMLN------YSSADYITDALDSQFKVKKIDINTVPYNNKISDGYIYLGLKNLRGVPRDL 763

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               I+E   ++PF+S+EDF +R+        ++  LV  GA D F  +R +++++L+ + 
Sbjct: 764  CYWIIE---NRPFNSIEDFLTRLPENYQKMDMITPLVEVGAFDKFDRNRRKIIENLEPLF 820

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             +   +         ++FA    ++ +           ++ ++  EQ +LG   S HPL 
Sbjct: 821  IFVNEL--------GSLFADTSYSWIET------EDYPNAEKYRLEQSLLGVGISPHPLL 866

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYE 1028
                 + +   KG+             +   +   +  +T+ KG ++ +++ ++  K+++
Sbjct: 867  ----EIARQSTKGFTALADLQENTEATILVELNQIRVIRTKTKGEQMAFLSVTDTQKKFD 922

Query: 1029 ANFFP 1033
               FP
Sbjct: 923  VTLFP 927


>gi|167579726|ref|ZP_02372600.1| error-prone DNA polymerase [Burkholderia thailandensis TXDOH]
          Length = 925

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 234/866 (27%), Positives = 379/866 (43%), Gaps = 51/866 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++        IAITD  +L  A      A    + 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAKKHGYRGIAITDECSLAGAPRMHVAAKEHELP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G   D+   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFDVTPDD----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129 VRICLSWLQEIGTEGLIM--LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            R+    L     E + +  +    +  +        + V + +L  F  LFG+R  + L
Sbjct: 124 YRLTPRMLAAPPPEFIHLRGVPDCFAILVPTY--PARADVLDAQLAWFGALFGERARLGL 181

Query: 187 -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q  R  D     QV        + +VA  +    +       D + A+        +  
Sbjct: 182 VQLQRALDGAHREQVRAAGERRGMRIVALGDVTMHTRSCKPLQDTMTAIRLGMP-IGECG 240

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + P+     R+          +AL  T  +   C F L       P  I         
Sbjct: 241 HALAPNAEQHLRTRQRIAQLFPADALAQTCRMLDACHFSLDELRYEYPHEIVPAG----H 296

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + L  +  AG   R   G        +  RQR+ FEL +IA +K+  YFL V D ++
Sbjct: 297 TPTSYLAQETWAGARRRYPDGV------PEAVRQRIGFELALIADLKYEPYFLTVYDIVE 350

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+  +I    GRGS A SV  Y L +T+++P + +LLFERF++ +R   PD D+DF   
Sbjct: 351 YARSKDIL-CQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFISRERGEPPDIDVDFEHQ 409

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K        
Sbjct: 410 RREEVIQYLYGKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGS 469

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              L   A            P +    +++ +L    RH S H+ G V+    L++LVP+
Sbjct: 470 RDLLARFASV----GLDPDVPLIRTWAKLAARLLNFPRHLSQHSGGFVVSRGKLTRLVPV 525

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDL 598
                    V Q++   +E  GL+K D L L  L+ L ++ D +               L
Sbjct: 526 ENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRL 585

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI   
Sbjct: 586 EHIPQDDKATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGG 645

Query: 659 VVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            V+   +  +        +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD
Sbjct: 646 AVHPYLERRRIAAGEVEGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEAD 705

Query: 712 VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            LRRAM     K ++ K   R + G  + G S   A  IFE +  F +YGF +SHAA++A
Sbjct: 706 ALRRAMAAWKRKGDLGKYHRRIVDGMLERGYSCEFAEQIFEQIKGFGEYGFPESHAASFA 765

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  +
Sbjct: 766 KLAYASSWLKCHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSDWEASL 825

Query: 831 G----------DNRIYYSLAAIKGVG 846
                         +   L+ ++G+ 
Sbjct: 826 EARPGEAPPDGRPAVRLGLSLVRGMS 851


>gi|15902839|ref|NP_358389.1| DNA polymerase III DnaE [Streptococcus pneumoniae R6]
 gi|15458393|gb|AAK99599.1| DNA-polymerase III alpha-chain [Streptococcus pneumoniae R6]
          Length = 1042

 Score =  448 bits (1153), Expect = e-123,   Method: Composition-based stats.
 Identities = 291/1022 (28%), Positives = 486/1022 (47%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 12   AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 71

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                 +  L  ++ GYQ+L++L +     ++       
Sbjct: 72   GLEMTVFVDDQEVN-------------LRFLALSSVGYQQLMKLSTAKMQGEK------- 111

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E + ++            +F+  +  E          G   Y+ +     
Sbjct: 112  TWSVLSQYL-EDIAVIVP----------YFDRVESLE---------LGCDYYIGVYPE-- 149

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 150  ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQD 198

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+AL+N  ++    S+ L     +          +  +    EL
Sbjct: 199  VFISASSLEKLFQECFPQALDNLEKLISGISYDLDTSLKLPR-------FNPARPAVEEL 251

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G         + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N 
Sbjct: 252  RERAELG--------LVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNG 303

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 304  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 363

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 364  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 420

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 421  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--D 478

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +D ET  
Sbjct: 479  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEIDLEDKETLA 538

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 539  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 598

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 599  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRA 658

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 659  SFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQV 718

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++   S+NT     K+ +  IY  L +IKGV    A
Sbjct: 719  MLNSSNS------DYLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKSIKGVSNDLA 772

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 773  LWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE 829

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ +              +F  EQ +LG   S HPL  
Sbjct: 830  FVKEL--------GSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQA 875

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 876  ----IASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVT 931

Query: 1031 FF 1032
             F
Sbjct: 932  LF 933


>gi|307709383|ref|ZP_07645841.1| DNA polymerase III subunit alpha [Streptococcus mitis SK564]
 gi|307619966|gb|EFN99084.1| DNA polymerase III subunit alpha [Streptococcus mitis SK564]
          Length = 1033

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 292/1022 (28%), Positives = 481/1022 (47%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRVAKEYGYTHLAMMDIDNLYGAFDFLEVTKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++++                    ++  L  ++ GYQ+L++L +     ++       
Sbjct: 63   GLEMNV-------------LVDAQEVNLRFLALSSVGYQQLMKLSTAKMQGEK------- 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E + ++     G                  L    L G   Y+ +     
Sbjct: 103  SWSVLSQYL-EDIAVIVPYFDG------------------LELLNL-GCDYYIGVYPE-- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 141  ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LSLREVPLRSRQD 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+AL+N  ++    S+ L     +          +  +    EL
Sbjct: 190  VFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLKLPR-------FNPARPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  GL          KG  +++Y+ RLD EL VI  M F  YFL+V D +++ + N 
Sbjct: 243  RERAELGLAQ--------KGLTSKEYQDRLDQELAVIHDMGFDDYFLVVWDLLRFGRSNG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 295  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 355  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKHG--D 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+       +  I  +D ET  
Sbjct: 470  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAKTEGIHLKVEEIDLEDKETLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 590  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRA 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  SFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQV 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    A
Sbjct: 710  MLNSANS------DYLTDALEAGFEVAPLSINTIPYHDKIANKSIYLGLKSIKGVSNDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 764  LWIIE---NRPYSNIEDFIAKLPENFLKLPLLEPLVKVGLFDSFEKNRQKVFNNLVNLFE 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ +              +F  EQ +LG   S HPL  
Sbjct: 821  FVKEL--------GSLFGDTIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQA 866

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 867  ----IASKAIYSITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQVDDSKKKLDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  LF 924


>gi|172040092|ref|YP_001799806.1| error-prone DNA polymerase [Corynebacterium urealyticum DSM 7109]
 gi|171851396|emb|CAQ04372.1| DNA polymerase III, alpha subunit [Corynebacterium urealyticum DSM
            7109]
          Length = 1157

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 258/1087 (23%), Positives = 428/1087 (39%), Gaps = 142/1087 (13%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS--ALEFSQKACAAGIQ 68
            F  L+  SSY  L GA     ++++  A    A+A  D + ++       +       ++
Sbjct: 88   FAELRAASSYHFLHGASEPEELVEQAIALGITALACLDRDGMYGAARFATAAAEAEGELK 147

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             + G +L ID               P  P + +L    EGY+RL   ++   +  + K +
Sbjct: 148  TVFGAELSID--------------GPQAPGLAVLCRGQEGYRRLSRSITAARMAHRDKDA 193

Query: 129  VRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
            V       L E      ++L   +   I              R     + FG     V L
Sbjct: 194  VEYPSFGELAEAAGGHWLVLIDAAQLSIPG------------RAAELLEAFGTQHCLVQL 241

Query: 187  QR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q      D      +   A TH L  + ++     +           A+     V++ + 
Sbjct: 242  QLSMDPADVDHNEALHAFATTHGLREILSSQPTCATPSQARLAGAKAALRRRWDVARAEP 301

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                           +   +     L      +   +        ++   +         
Sbjct: 302  VTHPMGGSWLRSGAELRQLAGDCAWLAEATATSVDVAEECAFTLNLVAPELPHFPVPEGH 361

Query: 306  EEENELRNKAVA-GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             E + LR      G      +G+ A    A +   R   EL VI ++ F GYFLIV D +
Sbjct: 362  SEMSWLRELVERNGTHRYGWRGSTAAAQKAWEVIDR---ELGVIEKLGFPGYFLIVHDIV 418

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
                 NNI    GRGS A S   +AL IT +D +   LLFERFL+P+R   PD D+D   
Sbjct: 419  DHCHSNNIL-CQGRGSAANSAVCFALGITSVDAVAAGLLFERFLSPEREGPPDIDLDIES 477

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
             RR+EVI+YV  +YG +  AQ+    + + K ALRD  RAL  P  QVD   +     P 
Sbjct: 478  GRREEVIQYVYRRYGRDNAAQVANVITYRRKGALRDAARALGYPAGQVDAWTRGAAEAPE 537

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                                      + +++++L G  RH   H+ G+VI DRP++ +VP
Sbjct: 538  R-------------------------VRQLAEQLIGQARHLGIHSGGMVICDRPIADVVP 572

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPF 603
                   +  V Q++       GL+KFD LGL  L  L  ++D +A  RG +++L  +  
Sbjct: 573  TEWARMENRSVVQWDKDDCAAVGLVKFDLLGLGMLEALHHAIDQVATHRGRRIELWRLAP 632

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVY 661
             +   Y +L+    +G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  +
Sbjct: 633  TEEAVYEMLSRADAVGVFQVESRAQMNTLPRLRPRRFYDLVVQVALIRPGPIQGGSVHPF 692

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKK 720
              R+NG E +   HP ++P L +T G+ ++QEQ+MQ+    +G++ +EAD LRRAM  K+
Sbjct: 693  IRRRNGLEPVTFDHPCLEPALSKTLGIPLFQEQLMQVVVDAAGFTAAEADTLRRAMGSKR 752

Query: 721  IKEEMDKQKERFISGA-SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
              E M + KERF  G    NGI+  +A  ++E +  FA YGF +SH+ ++A + Y +AW 
Sbjct: 753  SPERMARLKERFYEGLERTNGITGEVADRLWEKITAFAAYGFPESHSQSFAALVYYSAWF 812

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD------------ 827
            K HYP EF  A +  +       +    DAR+  ++I+P  VN                 
Sbjct: 813  KYHYPAEFCVALLRAQPMGFYSPQSLIADARRHGVRILPVCVNASGAQADTDLSAGSAAS 872

Query: 828  --------FKVGD----------------NRIYYSLAAIKGVGTTTARHIMEASAD-KPF 862
                    FK  +                  I   LA+I G+    A  I+    +   +
Sbjct: 873  PSVSSSSSFKDVNRARGVHGLGRGTAEPIGAIRLGLASIAGISEEAAERIVATREEQGEY 932

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
              + D         L+   + +L  AGAL+  G  R Q + +       A      R   
Sbjct: 933  RQVSDLSR---EAGLSVAQVAALARAGALESLGLDRRQAVWA-------AGLAATERE-- 980

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK----- 977
                     GT +   ++      ++      +         GHP+++ +  L +     
Sbjct: 981  -----GMLPGTSA--PSVPALPGMSAFELAAADLAATSVTPDGHPVELLRGQLSQWHDLP 1033

Query: 978  -------------MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
                           +    + +    G+ IR+A ++  +Q+  T  G  + ++   +  
Sbjct: 1034 VRAGVRRGQRRGGAAVVPAVDLLHVPDGSRIRVAGVITHRQRPATAGG--VVFLGVEDET 1091

Query: 1025 KEYEANF 1031
                   
Sbjct: 1092 GIANVML 1098


>gi|322421354|ref|YP_004200577.1| DNA polymerase III subunit alpha [Geobacter sp. M18]
 gi|320127741|gb|ADW15301.1| DNA polymerase III, alpha subunit [Geobacter sp. M18]
          Length = 1032

 Score =  448 bits (1151), Expect = e-123,   Method: Composition-based stats.
 Identities = 284/1076 (26%), Positives = 448/1076 (41%), Gaps = 139/1076 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FVHL VHSS S   G  S   +  + A      +AITD N L+    F   A  AGI PI
Sbjct: 2    FVHLHVHSSLSPNWGVHSPEALCSEAARLGFDTLAITDRNGLYGVPRFLDAAREAGISPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +                         VLL    EGY  +  L+S ++          
Sbjct: 62   IGTEA-----------------VTEQNRAVLLAVDREGYANISRLLSDLHCSKNFD---- 100

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              +  L +    G+I+L+                    + L   K+     L+V L    
Sbjct: 101  -LIQALAQYRR-GVIVLS-----------------DDRRLLSVLKRESDQGLFVELSPGH 141

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSE---------------------------- 222
                    + + L+    +P VAT  +L L                              
Sbjct: 142  DM-----HRALALSRDLRIPPVATARALMLDRSALTPPLSRRERGDVDTPRQEREYVDAH 196

Query: 223  --------EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY-LKNRSEMVSIFSDLPEALEN 273
                    +D+  H VL A+  +T +S+        +   L     M   F   PEALEN
Sbjct: 197  LRRDKDVLDDFHLHRVLRAIHLNTKLSRLAPELTACESDLLYPPLRMSDFFPHCPEALEN 256

Query: 274  TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
            T  IA  C       + I P F     DD        L  +A AG            G  
Sbjct: 257  TRRIAGMCRGEWDFSSTIFPAFRGLGNDDAFAT----LSARARAGALW-------RYGSI 305

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
                  RL+ EL +I    F+ YFL+V +  + +++       GRGS A S+ AY L IT
Sbjct: 306  DAKVEARLEKELTIIRDKGFAHYFLVVEEITKQSQRT-----CGRGSAAASLVAYCLGIT 360

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
             +DP+R +L FERFLN  R   PD D+DF  D RD ++ +   +YG  R A +      +
Sbjct: 361  HVDPIRHNLFFERFLNEGRSDPPDIDVDFPWDERDAILDFAFARYGARRAAMVANQVGFK 420

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
             ++ALR+V +   +P  ++  +   I        S  A+A    FR   L+    + L  
Sbjct: 421  GRSALREVAKVYGLPDFEIKEMTDRISGFWHAEQSAAAMAGHPLFRGEALSRDWQEIL-A 479

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
             +++L G  RH S H  G+VI    + + VP+       LP+ Q+     E AGL+K D 
Sbjct: 480  TARRLNGQLRHLSLHCGGLVIVPDEIRRYVPVE-ISHKGLPLIQWEKDQTEDAGLVKIDI 538

Query: 574  LGLKTLTLLQKSLDFLAQR--GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            LG ++L +++ +L  + ++        S  P +D  T  L+    T+G F LES  +R  
Sbjct: 539  LGNRSLAVIRDALAAVKEQKGMEIDYASWRPLEDERTQSLMRRGLTIGCFYLESPSVRLL 598

Query: 632  LEG----------MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            L               D  E ++   S+ RP     I  Y  R  GK K   +HPL++ +
Sbjct: 599  LRKIWSSTAPPETFDSDLFEVLVQASSIIRPAANSFIQEYVARMQGK-KWSHLHPLLESV 657

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM-DKQKERFISGASKNG 740
            L ET G+ IYQEQ+ QIA  L+G+S SE D LR+ + KK +E+       +FI+G  + G
Sbjct: 658  LGETLGIAIYQEQITQIAMELAGFSASEGDQLRKVITKKHREKRLADFHAKFIAGGKERG 717

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            +   +  +I+E +  FA Y F K H+A+YA++S + A+MK ++P +F+AA ++ +     
Sbjct: 718  VPGEVLDSIWEQILSFAGYSFCKPHSASYALLSAKAAYMKANHPAQFMAAVISNQ-GGYY 776

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD- 859
                +  + R+  + I+PP +N     +K  +  +   L  I G+    A+ +++   + 
Sbjct: 777  SPFAYISEGRRLGLTILPPDINESDYHYKGFEKSLRVGLMQIDGLTREGAKRLLKERKER 836

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY--SRMQLLQSLDNIQKYAQWVEK 917
             PF S +DF  R     + R   E LV AG  D       R  LL  L + Q+ A  +  
Sbjct: 837  GPFGSFQDFLRRA---GVQRADAERLVKAGCFDPLEGEQRRPALLWELLHFQQQATAL-- 891

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                    +F         +  L +    ++      E   LGF  S HPL +YK   ++
Sbjct: 892  --------LF-------EQQTELPQAPPYDAETVLRQEVETLGFLVSRHPLALYKAQWQR 936

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   E +    G  + +    ++ +  + + G  + +++F +    ++A FFP
Sbjct: 937  HRPIKAAELIR-HSGKWVTMVGWWITTKTVEDKHGRPMEFISFEDVTAIFDATFFP 991


>gi|220912798|ref|YP_002488107.1| DNA polymerase III subunit alpha [Arthrobacter chlorophenolicus A6]
 gi|219859676|gb|ACL40018.1| DNA polymerase III, alpha subunit [Arthrobacter chlorophenolicus A6]
          Length = 1161

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 260/1119 (23%), Positives = 455/1119 (40%), Gaps = 132/1119 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDK----------IAADQQPAIAITDTNNLFSALEFS 59
            SF HL V +++S   G      +                        TD + L+  ++  
Sbjct: 2    SFTHLHVSTAFSAHYGVSWPEELAQAAAADGASALAC----------TDRDGLYGTIKHL 51

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS---TAEGYQRLIELV 116
            +   AAG+ PI+G  L +   D       G         +V+L        GY+ L  L+
Sbjct: 52   KACMAAGLDPIVGVDLAVLDDD-------GDRRTEVAGRVVVLAKGHNNGAGYRALCRLI 104

Query: 117  SRMYLLDQGKQS----VRICLSWLQ------EIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
            S  +    GK      V +  + L       +     L++L G     + RA        
Sbjct: 105  SDAHARTSGKAGGTVPVAVTRAELASRTLDPQTLKPVLLVLIG-PDSDVGRAMGGRRYLR 163

Query: 167  AEKRLLTFKKLFG-DRLYVNL-----QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFL 220
                   +        +   +                 ++++LA  H +P V TN   + 
Sbjct: 164  PRTLFKQWLDAMPAGTVVAEIVSQLSTPGSPLSTAHAVRMLRLAEEHRVPAVLTNAVRYC 223

Query: 221  SEEDYEAHDVLMAVAH--------STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE 272
              +     DVL +              + Q              R     I +    A +
Sbjct: 224  GADGAPTADVLDSARTLKSLPELAGEPLLQPTGQGWLKTSNQMRRLAQEVISAAGYGAAD 283

Query: 273  NTV-----EIARRCSFILQVHAPILPRFIEKECD--DIQKEEENELRNKAVAGLEVRLAQ 325
             T      E       I         + +  E     I ++   EL  +  AG+  R   
Sbjct: 284  LTQLLAQTEALADACRIDPAGDMGWKQPVVPEASIIGINQDPALELVQRCHAGIGRRFPG 343

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                 G   Q    RL+ EL +I  + FS YFL VA+  +  +   +     RGSGA S+
Sbjct: 344  ---ITGTAEQAMLTRLEHELTIIRNLNFSSYFLTVAEVSRMIQDMGVRAA-ARGSGASSL 399

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
              Y + ++ ++PL+  L+FERFL+ DR ++PD DID     R  V R +  ++G ERV  
Sbjct: 400  VNYLIDVSQVNPLQHDLIFERFLSQDRATLPDIDIDVESAERHNVYRKIFERFGAERVTL 459

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
            +      +A+ A+RD G AL M   +V  + K +    A     +A+ +    RE     
Sbjct: 460  MSMQNGYRARGAVRDAGLALGMDGDEVGEIAKQLWRFSAGKF-REALQEKPELREFAGRV 518

Query: 506  PSVDR--------LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
               D         L++++++L+ L RH S H  G+++GD  L    P+       LP++Q
Sbjct: 519  EQRDTDGNQQLDLLVDLTERLDRLPRHISMHPCGVILGDATLLDRTPVQ-PSGLGLPMSQ 577

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV----------------------- 594
            F+   ++  G++K D LG++  + +  ++  + +                          
Sbjct: 578  FDKHDMDPMGMLKLDVLGVRMQSAMAFAVREVIRLHPSKEEVVAAGNHPRGPQGSGPDYI 637

Query: 595  ----KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 +DL+ +P DD  T+ L+ +  TLG FQ+ES G R+ +  M P    D+I  +SL+
Sbjct: 638  ADNGHIDLNAVPLDDQATFELIRSTHTLGCFQIESPGQRELIGKMAPREFNDLIIDISLF 697

Query: 651  RPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+ + +   +   ++G    V  HP + P+L ET GV ++ EQ+++   +++   L+
Sbjct: 698  RPGPMKSDMVRPFLEHRHGFAPEVYPHPDLKPVLAETHGVTVFHEQILKTFDVMTHCGLA 757

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD  RRA+G +I+E   ++  R    A   G +  +   ++  L  F  +GF K+H AA
Sbjct: 758  RADEFRRALGNEIREPDVEEFFR--KAARARGYAPEVLDKVWGTLKAFGSFGFCKAHGAA 815

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            +AV +YQ+AW+KTH+P  FLA     +     K +    +AR+  I I+P  +N    ++
Sbjct: 816  FAVPTYQSAWLKTHHPEAFLAGLWEHDPGMYPK-RLLVAEARRLGIPILPLDINRSKDEY 874

Query: 829  KVG---------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            +V             I  SL  I G+  T  + I+   A +PFDSL D  SR    ++++
Sbjct: 875  RVERILSGADSGKLGIRLSLKGIYGLSATELKRIV---AGQPFDSLADLRSR---SRISK 928

Query: 880  RVLESLVFAGALDCFG------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
              ++ L   GA D          +R  L+Q L  +Q        +      +    +   
Sbjct: 929  PSIKRLAQLGAFDSLHREAGGTANRADLVQHLQQLQVTGSRKGTDVLEGQLSFPLGDIEL 988

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
             + K  L +            E  ++    S H +D ++P+L ++G+   ++ +    G 
Sbjct: 989  RNVKPGLPQ---PTLVETVRAELDLMAVDVSTHLMDSHRPVLERLGVTTADKLLGLRNGT 1045

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + +A + V+ Q    R G R+ +++  +     ++ FF
Sbjct: 1046 EVLVAGVRVATQTPPMRGGRRVVFISIDDGTGCIDSVFF 1084


>gi|303254600|ref|ZP_07340703.1| DNA polymerase III DnaE [Streptococcus pneumoniae BS455]
 gi|303259799|ref|ZP_07345774.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP-BS293]
 gi|303264635|ref|ZP_07350553.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae BS397]
 gi|303267465|ref|ZP_07353317.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae BS457]
 gi|301801743|emb|CBW34452.1| DNA polymerase III alpha subunit [Streptococcus pneumoniae INV200]
 gi|302598452|gb|EFL65495.1| DNA polymerase III DnaE [Streptococcus pneumoniae BS455]
 gi|302639004|gb|EFL69464.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP-BS293]
 gi|302642998|gb|EFL73293.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae BS457]
 gi|302645722|gb|EFL75951.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae BS397]
          Length = 1033

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 292/1022 (28%), Positives = 487/1022 (47%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                 +  L  ++ GYQ+L++L +     ++       
Sbjct: 63   GLEMTVFVDDQEVN-------------LRFLSLSSVGYQQLMKLSTAKMQGEK------- 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E + ++            +F+  +  E          G   Y+ +     
Sbjct: 103  TWSVLSQYL-EDIAVIVP----------YFDRVESLE---------LGCDYYIGVYPE-- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 141  ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQD 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+AL+N  ++    S+ L     +          +  +    EL
Sbjct: 190  VFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLKLPR-------FNPARPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G         + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N 
Sbjct: 243  RERAELG--------LVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 295  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 355  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--D 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +D ET  
Sbjct: 470  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEIDLEDKETLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 590  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRA 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  SFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQI 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    A
Sbjct: 710  MLNSANS------DYLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSNDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 764  LWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ +              +F  EQ +LG   S HPL  
Sbjct: 821  FVKEL--------GSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQA 866

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 867  ----IASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  LF 924


>gi|22537100|ref|NP_687951.1| DNA polymerase III DnaE [Streptococcus agalactiae 2603V/R]
 gi|25010983|ref|NP_735378.1| DNA polymerase III DnaE [Streptococcus agalactiae NEM316]
 gi|76788136|ref|YP_329656.1| DNA polymerase III DnaE [Streptococcus agalactiae A909]
 gi|77406846|ref|ZP_00783875.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae H36B]
 gi|77411007|ref|ZP_00787362.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae CJB111]
 gi|77413238|ref|ZP_00789435.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae 515]
 gi|22533960|gb|AAM99823.1|AE014234_13 DNA polymerase III, alpha subunit [Streptococcus agalactiae 2603V/R]
 gi|23095383|emb|CAD46588.1| DNA polymerase III (alpha subunit) [Streptococcus agalactiae NEM316]
 gi|76563193|gb|ABA45777.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae A909]
 gi|77160698|gb|EAO71812.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae 515]
 gi|77162931|gb|EAO73887.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae CJB111]
 gi|77174540|gb|EAO77380.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae H36B]
          Length = 1034

 Score =  447 bits (1149), Expect = e-123,   Method: Composition-based stats.
 Identities = 281/1025 (27%), Positives = 463/1025 (45%), Gaps = 102/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   + K  +     I I D +NL++A  F Q+A  A ++PI
Sbjct: 2    FAQLDTRTVYSFMDSLVDLKTYVSKSKSLGYQTIGILDHSNLYAAYHFIQEAQKANLRPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G   DI +++                    +     GY+ L++L +   + ++      
Sbjct: 62   VGFSFDIVVENRSIEVY-------------CIAINTVGYKNLLKLST-AQMSEK------ 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L+ L E   EG+                        + +L ++ +         Q + 
Sbjct: 102  MSLNLLTE-HLEGV------------------------QLILPYQDVLD-------QLNL 129

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             +D      +      +  P++A +   +  + D E   +L A+  + ++          
Sbjct: 130  PFDYVIGVNLTSPQIPYTKPIIAIDTVRYFQKNDIETLQMLHAIRDNVLLKDAQYASKNQ 189

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            +        +                +              +                 E
Sbjct: 190  ELKPCQEMTLAFKERFPEALANLESLVENVAYHFDSDFKLPIFNREIPAG--------EE 241

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR                +KG  +  Y++RL+ EL +I +M F  YFLIV D +++ +  
Sbjct: 242  LRTLTQ--------NNLKSKGLWSDAYQERLEKELTIIHKMGFDDYFLIVWDLLRFGRSK 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ +YAL IT IDP++ +L+FERFLN +R SMPD DID     R E 
Sbjct: 294  GYYMGMGRGSAAGSLVSYALNITGIDPVKHNLIFERFLNEERYSMPDIDIDLPDIYRGEF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            +RYV+N+YG    AQI+TF +  AK A+RDV +       ++  + K I           
Sbjct: 354  LRYVRNRYGSMHSAQIVTFSTFGAKQAIRDVFKRFGASEYELTNITKKIHFRDNLT---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+   +     +  +I++++EG  R  S HAAG+V+ D  L+  +P+     
Sbjct: 411  VYNRNLAFRQIIDSKIEYQKAYDIAKRIEGNPRQTSIHAAGVVMSDDLLTDHIPLKNG-- 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFLAQRGVKVDLSLIPFDDHETY 609
             D+ +TQ++   +E  GL+K DFLGL+ LT +QK         G+ + L  I  +D ET 
Sbjct: 469  EDMMITQYDASSVEDNGLLKMDFLGLRNLTFVQKMKEKVDKDYGISIQLETIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E SG    L  ++P+C ED++A  SL RPG  D    + NR+ GKE
Sbjct: 529  KLFAAGQTKGIFQFEQSGAINLLRRIRPECFEDVVATTSLNRPGASDYTENFINRRFGKE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  + P+I P+L+ T G+++YQEQVMQIAQ  +G++L ++D+LRRAM KK  +EM K  
Sbjct: 589  KIDLVDPVIAPILQPTYGIMLYQEQVMQIAQTYAGFTLGKSDLLRRAMSKKNSKEMQKMS 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ GA   G  +  A  IFE +AKFA YGFN+SHA AY+ +++Q A+ K HY   F  
Sbjct: 649  QSFLEGAVSKGHRQEDARLIFERMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYSDVFYD 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +            +  DA  F   I  PS+NT     ++   +IY  L  IKGV    
Sbjct: 709  IMINYSNS------DYLIDAIDFGFVIEKPSINTISYRDRIYKKKIYLGLKNIKGVPNDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I   S ++PF S+EDF  R+  +      +  L+  GA D F  +R ++  +LD++ 
Sbjct: 763  AYWI---SKNQPFQSIEDFLMRLPQQFQKSGFISPLIAIGAFDEFDNNRRKITSNLDSLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             +   +         ++FA     +       +    ++S ++E EQ +LG   S HPL 
Sbjct: 820  TFVNEL--------GSLFADTSYHWL------EVEDFSNSEKYEMEQDILGVGISPHPLV 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYE 1028
                 + +   + +         +   +   +   +  +T+  G ++ ++T  +   + +
Sbjct: 866  G----ISQKASRPFIPISQVQENSEATILVQLKQVKVIRTKSSGQQMAFLTVMDINSKMD 921

Query: 1029 ANFFP 1033
               FP
Sbjct: 922  ITVFP 926


>gi|182683841|ref|YP_001835588.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14]
 gi|182629175|gb|ACB90123.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14]
          Length = 1042

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 292/1022 (28%), Positives = 487/1022 (47%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 12   AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 71

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                 +  L  ++ GYQ+L++L +     ++       
Sbjct: 72   GLEMTVFVDDQEVN-------------LRFLSLSSVGYQQLMKLSTAKMQGEK------- 111

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E + ++            +F+  +  E          G   Y+ +     
Sbjct: 112  TWSVLSQYL-EDIAVIVP----------YFDRVESLE---------LGCDYYIGVYPE-- 149

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 150  ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQD 198

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+AL+N  ++    S+ L     +          +  +    EL
Sbjct: 199  VFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLKLPR-------FNPARPAVEEL 251

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G         + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N 
Sbjct: 252  RERAELG--------LVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNG 303

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 304  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 363

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 364  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 420

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 421  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--D 478

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +D ET  
Sbjct: 479  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEIDLEDKETLA 538

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 539  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 598

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 599  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRA 658

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 659  SFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQI 718

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    A
Sbjct: 719  MLNSANS------DYLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSNDLA 772

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 773  LWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE 829

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ +              +F  EQ +LG   S HPL  
Sbjct: 830  FVKEL--------GSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQA 875

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 876  ----IASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVT 931

Query: 1031 FF 1032
             F
Sbjct: 932  LF 933


>gi|167892674|ref|ZP_02480076.1| error-prone DNA polymerase [Burkholderia pseudomallei 7894]
          Length = 850

 Score =  446 bits (1147), Expect = e-122,   Method: Composition-based stats.
 Identities = 240/865 (27%), Positives = 381/865 (44%), Gaps = 51/865 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129 VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            R+    L         L  +    +  +        + V + +L  F  LFG+R  + L
Sbjct: 124 YRLTPRMLAAPPRALAHLRGVPDCFAILVPTY--PARADVLDAQLAWFDALFGERARLGL 181

Query: 187 -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q  R  D     QV        + +VA  +            D + A+        +  
Sbjct: 182 VQLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMP-IAECG 240

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + P+     R+          +AL  T  +   C F L       P  I         
Sbjct: 241 HALAPNGEQHLRTRQRIAQLFPADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----H 296

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D ++
Sbjct: 297 TPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVK 350

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+  +I    GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   
Sbjct: 351 YARSKDIL-CQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQ 409

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K        
Sbjct: 410 RREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGS 469

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              L   A            P +    EI+ +L    RH S H+ G V+    L++LVP+
Sbjct: 470 RDLLARFASV----GLDPEVPLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPV 525

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDL 598
                    V Q++   +E  GL+K D L L  L+ L ++ D +               L
Sbjct: 526 ENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRL 585

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI   
Sbjct: 586 EHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGG 645

Query: 659 VVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            V+   +  +        +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD
Sbjct: 646 AVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEAD 705

Query: 712 VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            LRRAM     K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A
Sbjct: 706 ALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFA 765

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  +
Sbjct: 766 KLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASL 825

Query: 831 G----------DNRIYYSLAAIKGV 845
                         +   L+ ++G+
Sbjct: 826 EAQPGAAPPDGRPAVRLGLSLVRGL 850


>gi|307706663|ref|ZP_07643470.1| DNA polymerase III subunit alpha [Streptococcus mitis SK321]
 gi|307618118|gb|EFN97278.1| DNA polymerase III subunit alpha [Streptococcus mitis SK321]
          Length = 1033

 Score =  446 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 290/1022 (28%), Positives = 483/1022 (47%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S++  +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIDKYVRVAKDYGYTHLAMMDIDNLYGAFDFLEVTKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++++ + D                 +  L  ++ GYQ+L++L +     ++       
Sbjct: 63   GLEMNVLVDDKDVN-------------LRFLALSSVGYQQLMKLSTAKMQGEK------- 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E + ++                     + L       G   Y+ +     
Sbjct: 103  SWSVLSQYL-EDITVIVP--------------YFEELELLN-----LGCDYYIGVYPE-- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++          +D E   VL A+  + +  ++   R   D
Sbjct: 141  ----------TLASEFHHPILPLYRVNTFESKDREVLQVLTAIKEN-IPLREVPLRSRQD 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+ LEN  ++    S+ L     +          +  +    EL
Sbjct: 190  VFISASSLEKLFQERFPQTLENLEKLISGISYDLDTSLKLPR-------FNPARPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  GL          K   +++Y+ RLD EL VI  M F  YFL+V D +++ + N 
Sbjct: 243  RERAELGLAQ--------KELTSKEYQDRLDQELAVIHDMGFDDYFLVVWDLLRFGRSNG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 295  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 355  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LQSA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKHG--D 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   + + +  I  +D ET  
Sbjct: 470  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHIKIEEIDLEDKETLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 590  VTVLAPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRA 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F   
Sbjct: 650  SFIQGSIEAGHTAEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKMHYPAIFYQV 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    A
Sbjct: 710  MLNSANS------DYLIDALEAGFEVAPLSINTIPYHDKIANKAIYLGLKSIKGVSKDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 764  LWILE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLVNLFE 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ D          +   +F  EQ +LG   S HPL  
Sbjct: 821  FVKVL--------GSLFGETIYSWQDS------EDWSEQEKFYMEQELLGVGVSKHPLQA 866

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 867  ----IASKAIYPITPISNLSENSYAIILVEVQKIKVIRTKKGENMAFLQVDDSKKKLDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  LF 924


>gi|163733046|ref|ZP_02140490.1| DNA polymerase III, alpha subunit [Roseobacter litoralis Och 149]
 gi|161393581|gb|EDQ17906.1| DNA polymerase III, alpha subunit [Roseobacter litoralis Och 149]
          Length = 991

 Score =  446 bits (1146), Expect = e-122,   Method: Composition-based stats.
 Identities = 222/1007 (22%), Positives = 389/1007 (38%), Gaps = 91/1007 (9%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAIT------------DTNNLFSALEF 58
           F  L + S++S L+GA      + +                        D N +   +  
Sbjct: 2   FAELNITSNFSFLKGASHPEEYMSR------------AAALGIGAIAIADENTVAGIVRA 49

Query: 59  SQKAC-------------AAGIQPIIG----CQLDIDMQ---DNLKMTNQGKTPFPTVPS 98
             +A              AA  Q  IG      L +         ++    +  F     
Sbjct: 50  HAQARDIARQVRERQTWEAANGQ--IGPALPAGLRVTPTFLYAMPRLIPAARLVFSDACE 107

Query: 99  IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
           I  L     G+  L  L+S      + K S  + L  L E G+ GL ++    +  +   
Sbjct: 108 ITALPENRVGWGTLCRLLSMGRQRAE-KGSCELRLQDLLEGGS-GLQLILWPQAQEVPC- 164

Query: 159 FFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNS 217
                +    +      + F  ++++ L   + G D  R + + + A    LP VA+   
Sbjct: 165 ----GAGGWAQTARQLTRRFTGKIHIGLFPQYDGRDPQRFADLTEQARRLGLPTVASAAP 220

Query: 218 LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
           +       +  DV+ A+     V    R  +            +       EA  +    
Sbjct: 221 VMHHGARRKLADVVTAIRTGCRVDDLGRDALPNSEARLRSEAEMRRLFKGFEAAVDRAHT 280

Query: 278 ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
             +        +    R+         +   + LR  A  GL  R   GA      +   
Sbjct: 281 LAQS----LKFSLDELRYEYPSEIAENETPSDRLRRLAYEGLAWRYPAGA------SDKV 330

Query: 338 RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            + L+ EL +I ++K+  YFL V D + +A+  +I    GRGS A SV  Y L +T + P
Sbjct: 331 HRLLEHELTLIGKLKYEPYFLTVRDIVAFARSRDIL-CQGRGSAANSVVCYCLGVTSVSP 389

Query: 398 LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
              +++FERF++  R   PD D+DF  +RR+EVI+++  +YG  R     T    + K A
Sbjct: 390 EIGTMVFERFVSEARNEPPDIDVDFEHERREEVIQHIYERYGRHRAGLCATVVHYRGKRA 449

Query: 458 LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
           +R+VGRA+ +    +  L   +    +          +               L+     
Sbjct: 450 IREVGRAMGLSEDTISALSSQLWGFFSTKGIEAERMAEIGLDANDRRLQQTLALVYEING 509

Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
                RH S H  G VI +  L +LVP+         V  ++   IE  G++K D L L 
Sbjct: 510 F---PRHLSQHVGGFVITEGRLDELVPIENATMEGRTVICWDKDDIETLGILKVDVLSLG 566

Query: 578 TLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            LT ++K+ D       V   L+ +P +D   Y +L    ++G+FQ+ES      L  M+
Sbjct: 567 MLTCIRKAFDLMQMHHNVSHTLASLPPEDPVVYDMLCRADSIGVFQVESRAQMNFLPRMR 626

Query: 637 PDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
           P C  D++  V++ RPGPI   +V+    R+NG+E++      +  +L +T GV ++QEQ
Sbjct: 627 PRCFYDLVIEVAIIRPGPIQGDMVHPYIRRRNGEEEVSFPSDELGEVLGKTLGVPLFQEQ 686

Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELL 753
            MQIA + +G++  +AD LRR++    K   + + +  F+ G    G  +  A   F  +
Sbjct: 687 AMQIAIVGAGFTPDQADRLRRSLATFKKHGNVSEFRNLFLRGMKNKGYDEDFAERCFSQI 746

Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
             F  YGF +SHAA++A++ Y ++W+K H+P  F  A +  +        +  +DAR+  
Sbjct: 747 EGFGSYGFPESHAASFALLVYASSWIKCHHPGIFACALLNSQPMGFYAPAQIVRDAREHG 806

Query: 814 IQIMPPSVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
           + + P  +N    +  +  +      +      IKGV    A  +  A  +  + S+ D 
Sbjct: 807 VDVRPICINASFWENVMEPDGQGGLALRLGFRQIKGVSEEDATWLTAARGNG-YRSVRDV 865

Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
             R   + +   ++E L  A        +R   L     +   A             +FA
Sbjct: 866 WRRAGLQPM---MIERLAEADVFAALDLNRRAALWEAKALVPGA----------PLPLFA 912

Query: 929 HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            +    +                   +   +      HP+ + +  L
Sbjct: 913 GDIDGEAIDEPAALLPEMTLGEEVVEDYVAMRLTLRAHPMALLRHRL 959


>gi|297624571|ref|YP_003706005.1| DNA polymerase III subunit alpha [Truepera radiovictrix DSM 17093]
 gi|297165751|gb|ADI15462.1| DNA polymerase III, alpha subunit [Truepera radiovictrix DSM 17093]
          Length = 1719

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 290/845 (34%), Positives = 437/845 (51%), Gaps = 98/845 (11%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAA---DQQPAIAITDTNNLFSALEFSQKACAAGI 67
           F HL  H++YSLL+GA  + +++  +     +  P +A+TD  N+  A+EF + A   G+
Sbjct: 27  FAHLHQHTAYSLLDGAARIKDLMAWVKEVSPEN-PTVAMTDHGNMHGAVEFYKTAEKFGV 85

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTP--FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           +PI+G +  +      +                + LL    +GYQ L +L SR +L +  
Sbjct: 86  KPILGFEAYVTAGSRFEKRRPAGASKLDGGYFHLTLLAKNFKGYQNLCKLNSRGWL-EGF 144

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
               R+    L+E  +EG+I L+G     + R       +  E+ L  +  ++GD  ++ 
Sbjct: 145 YMKPRVDHELLREY-SEGVIALSGCLGAQLPRYLLDLGEEAGEEILKQYLDIYGDNFFIE 203

Query: 186 LQRHRGYD---------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
           LQ H   +                     +  LA+ + L +VATN+  ++ + D +AH+ 
Sbjct: 204 LQNHVPENPSEMTESLRELTEQQTRLNPMLKSLAHKYGLGMVATNDGHYVKKGDAKAHEA 263

Query: 231 LMAVAHSTVVSQKDRPRVTPDHYL---KNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
           L+A+   T +S  +R R   D +              S+   AL N+V +A  C+  L +
Sbjct: 264 LLAIQTKTTLSDPNRFRFPCDEFYVKTPEEMARAIPESEYEGALSNSVLVAEMCNVELPI 323

Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA----------------------- 324
            +  +   + +      +    +LR +   GL  R                         
Sbjct: 324 GSKRVY-QMPELPVPAGRTLAEQLRVQTYEGLLARYPVIDEALLRRYLALSEVAPKLGPL 382

Query: 325 ---QGAIAKGYHAQDYRQRLDFE-------LNVIARMK---------------------- 352
              +  ++    A +  QR   E          + ++K                      
Sbjct: 383 NTLEEVLSGLATAGEVCQRRAREEGTKYVSYAHLEKLKAQGGVSEEALTILERAEYELGV 442

Query: 353 -----FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
                F  YFLIVADFI WAK   I VGPGRGSGAGS+ AYA  ITDIDPL F LLFERF
Sbjct: 443 IIAMGFPDYFLIVADFINWAKSQGIAVGPGRGSGAGSLVAYATRITDIDPLAFDLLFERF 502

Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
           LNPDR+SMPDFD+DF   RR EV+ YV+ KYG E+VAQI TFG++ +KAA+RD  R L++
Sbjct: 503 LNPDRVSMPDFDVDFSDARRMEVVDYVRRKYGEEKVAQIATFGTMASKAAVRDAARVLEV 562

Query: 468 PYSQVDRLCKLIPNDPAHPVSLQA-IADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
           PY+  D + KLIP        ++  + + S  R            ++++  LEGL RHAS
Sbjct: 563 PYADADAVSKLIPVVFGRSTPIKKALEEVSEIRTLYEGGAKEF--MDVAMTLEGLTRHAS 620

Query: 527 THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            HAAG++I   P+ +L P++R       V Q++M  +E+ G +K DFLGL+TLT ++ ++
Sbjct: 621 VHAAGVIIAREPIQELAPVFR-SGDGPIVCQYDMGSVEELGFLKMDFLGLRTLTFIETAV 679

Query: 587 DFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             + + RGV +D    P  D +T+ LL+     G+FQ ES GM   L+ ++P+ I+D+IA
Sbjct: 680 RIIEESRGVTLDPDAFPQGDPKTFELLSRGEAAGVFQFESPGMVDTLKKLRPNRIQDLIA 739

Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIH------PLIDPMLKETQGVIIYQEQVMQIA 699
           + +LYRPGP++NI  Y  R +G E++            + P+L+ET G+ +YQEQ+MQIA
Sbjct: 740 VSALYRPGPMENIPTYIRRHHGLEEVDYTAQFPVAGEYLAPILEETYGIPVYQEQIMQIA 799

Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
           Q ++GY+L EAD+LRRAMGKK  EEM KQ+E F++GA+K GI    A  IF+LL KFA+Y
Sbjct: 800 QAVAGYTLGEADLLRRAMGKKKVEEMLKQREVFLAGAAKKGIPAAEASAIFDLLEKFANY 859

Query: 760 GFNKS 764
           GFNK 
Sbjct: 860 GFNKC 864



 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 99/406 (24%), Positives = 165/406 (40%), Gaps = 24/406 (5%)

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI------IYQEQVMQIA 699
             ++  R           +      ++ +           T   I        +E    + 
Sbjct: 1168 QLACLREVLKRTPPACESVDTLPPEVKTWVQEAQRESGLTWREIEARSGVCTKEFYSSLG 1227

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF---ELLAKF 756
                G+  +    L    G +       +   +          + +  ++          
Sbjct: 1228 AHKKGFRRATIGKLAAFFGSEKLLRACSEDLFWERVERIEPAGEAMTYDLTVEGTHNFVA 1287

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
             D   + SH+AAY  +SYQTA++K HYPVEF AA +T+E  + +K+ ++  DAR+  +Q+
Sbjct: 1288 GDLIVHNSHSAAYGALSYQTAYLKAHYPVEFTAALLTVERGDSDKVAQYVTDARKLGVQV 1347

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            +PP +N    DF      + + L  IK VG     HI+E     PF  L DFC RVDS  
Sbjct: 1348 LPPDINESRSDFTPVGEVVRFGLYGIKNVGDGAVEHILEVRKAGPFKDLFDFCKRVDSSL 1407

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            +N+R LE LV AGA D  G  R  +L +L++  K+     +       ++F  E+     
Sbjct: 1408 VNKRALEHLVKAGAFDKLG-DRSAMLANLESAMKWGAAQREQAAAGQLSLFGAEE-VKPP 1465

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG-------YEESVAT 989
            ++ +EK    ++      E+  LG Y S HP++ Y P L              Y E VA 
Sbjct: 1466 EVKVEK--PYSTLELLRFEKEALGLYISDHPMNSY-PGLAHAASCTVAGLEACYRELVAA 1522

Query: 990  IRG---NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             RG     + LA ++ +  +K  R G+ + +   ++     E   F
Sbjct: 1523 SRGETRQRLVLAGIMQNVVKKAARSGNMMAFFDLTDETGSKEVVAF 1568


>gi|290580380|ref|YP_003484772.1| DNA polymerase III subunit alpha [Streptococcus mutans NN2025]
 gi|254997279|dbj|BAH87880.1| DNA polymerase III alpha chain [Streptococcus mutans NN2025]
          Length = 1034

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 279/1025 (27%), Positives = 473/1025 (46%), Gaps = 102/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L + + K        I I D +NL+ A  F ++A    + PI
Sbjct: 2    FAQLDTKTVYSFMDSLIDLKSYIKKAKEMGYSHIGIMDRDNLYGAFHFIKEAQKEKLVPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +LD+ + ++L              ++  +     GY  L+++ +   +  Q      
Sbjct: 62   LGLELDLFLSNDL-------------TTVCFIAQNTIGYHNLLKIST-AKMTGQQ----- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               S ++E   +GL ++     G        +               F    Y+ +    
Sbjct: 103  -LFSDIEEFM-DGLAIIVPYFEGI-------DQMD------------FPFSFYIGV---- 137

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
               R    Q+       +  ++  +   +   +D E   +L A+  +  + +        
Sbjct: 138  ---RKDTPQL-----DFKRDILPLHTVRYYDNDDTETLQILHAIRDNLPLREVPPVSKDQ 189

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              + +   E +         L     +A                  +            E
Sbjct: 190  YLFSQEEMEQIFEERFPQSLLNLEKLVANVSYQFDTDLKLPRFSRDKPAVV--------E 241

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L+  A  G         I K   + DY++RL  EL VI +M F  YFLIV D +++ +  
Sbjct: 242  LKELAQKG--------LIEKKLLSDDYQKRLSDELAVIHQMGFDDYFLIVWDLLRFGRSQ 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +  +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R + 
Sbjct: 294  HYYMGMGRGSAAGSLVAYALDITGIDPVKNDLLFERFLNEERYSMPDIDIDLPDIYRSQF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV+++YG    AQI+TF +  A+ A+RDV +       ++ ++ K I           
Sbjct: 354  LNYVRDRYGSTHSAQIVTFSTFGARQAIRDVFKRFGATEYELSQITKKISFRDNLT---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   FR+   +     R  EI++K+EG  R  S HAAGIV+ D  L+  +P+     
Sbjct: 411  VYDKKIAFRQLINSKIEYQRAFEIAKKIEGNPRQTSIHAAGIVMSDDNLTDHIPLKTG-- 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETY 609
             ++ +TQ++   +E  GL+K DFLGL+ LT +QK  + +AQ     +D+  I  +D ET 
Sbjct: 469  EEMMITQYDAPAVEANGLLKMDFLGLRNLTFIQKMQEKVAQDYGRAIDIRAIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E++G    L+ ++P   E+++A  SL RPG  D    +  RK G+E
Sbjct: 529  ALFAAGDTKGIFQFEAAGAINLLKRIKPSRFEEVVATTSLNRPGASDYTENFIRRKYGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  I   I  +LK T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK   EM K +
Sbjct: 589  EVDLIDSSIASILKSTYGIMLYQEQVMQIAQIFAGFTLGKADLLRRAMSKKNTVEMQKME 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ GA + G    +A ++F  +AKFA YGFN+SHA AY+ +++Q A+ K HYP  F  
Sbjct: 649  KDFLQGADQLGRDLKVAQDLFARMAKFAGYGFNRSHAYAYSALAFQMAYFKVHYPAVFFD 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +            +  +A + + ++ P S+NT     K+   +IY  L  IKG+    
Sbjct: 709  VMLN------YSSGDYLSNALETHFKLGPLSINTIPYSDKISHGQIYLGLKNIKGLNRDF 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+E   ++PF S+EDF  R   K     ++  L+  G  D F  +R +++ +L+++ 
Sbjct: 763  AYWIIE---NRPFSSIEDFLIRTPEKYQKTEIITPLIQVGLFDQFDKNRQKIVVNLEHLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             +   +         ++FA     + +           ++ +++ EQ ++G   S HPL 
Sbjct: 820  TFVNEL--------GSLFADSSYNWIEA------QDYTNAEKYQLEQDIIGTGVSPHPL- 864

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYE 1028
                 + K   +        + GN   + A + S +  +T+ +G ++ +++ ++  K+  
Sbjct: 865  ---IEIAKHSSRHLITLTDLVEGNEATILAQIESIRIIRTKSRGEQMAFLSVTDTKKKLN 921

Query: 1029 ANFFP 1033
               FP
Sbjct: 922  ITLFP 926


>gi|148984631|ref|ZP_01817899.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP3-BS71]
 gi|147923022|gb|EDK74137.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP3-BS71]
 gi|301799883|emb|CBW32460.1| DNA polymerase III alpha subunit [Streptococcus pneumoniae OXC141]
          Length = 1033

 Score =  445 bits (1144), Expect = e-122,   Method: Composition-based stats.
 Identities = 287/1022 (28%), Positives = 480/1022 (46%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                 +  L  ++ GYQ+L++L +     ++       
Sbjct: 63   GLEMTVFVDDQEVN-------------LRFLALSSVGYQQLMKLSTAKMQGEK------- 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E + ++            +F+  +  E          G   Y+ +     
Sbjct: 103  TWSVLSQYL-EDIAVIVP----------YFDRVESLE---------LGCDYYIGVYPE-- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 141  ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQD 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+AL+N  ++    S+ L +   +          +  +    EL
Sbjct: 190  VFISASSLEKLFQERFPQALDNLEKLISGISYDLDISLKLPR-------FNPARPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G         + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N 
Sbjct: 243  RERAELGF--------VQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 295  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 355  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--D 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+       +  I  +D ET  
Sbjct: 470  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETLD 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +   ++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 590  VTVLDSALEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRA 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   +  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  SFIQGSIEAGHTAEKSEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQV 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++   S+NT     K+ +  IY  L +IKG+    A
Sbjct: 710  MLNYSNS------DYLIDALEAGFEVASLSINTIPYHDKIANKSIYIGLKSIKGLSKDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E     P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 764  LWIIEHR---PYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ +              +F  EQ +LG   S HPL  
Sbjct: 821  FVKEL--------GSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQA 866

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 867  ----IASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  LF 924


>gi|313890133|ref|ZP_07823768.1| DNA polymerase III, alpha subunit [Streptococcus pseudoporcinus SPIN
            20026]
 gi|313121494|gb|EFR44598.1| DNA polymerase III, alpha subunit [Streptococcus pseudoporcinus SPIN
            20026]
          Length = 1036

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 287/1028 (27%), Positives = 484/1028 (47%), Gaps = 106/1028 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV L   + YS ++  + L++ + +       +I I D + L++A  F  KA  AG+QPI
Sbjct: 2    FVQLDTKTVYSFMDSLIDLDHYISEAKRIGYQSIGIMDKDCLYAAYHFILKAQKAGLQPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  L I+                   S+ LL     GYQ L++L +   +  +      
Sbjct: 62   LG--LAIEYP-----------IQGKEESLYLLAKNNLGYQNLLKLSTL-RMSAEF----- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL---Q 187
                 +++   +GL+++         +                          + L    
Sbjct: 103  -TPEHIKDFL-DGLMVILP------YQPHLHG---------------------IELGFPY 133

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                ++  +  Q + L       L+      + S+ + E   VL A+  +  +       
Sbjct: 134  FTGVFEETKLVQPLPLQN-----LIPLRTVRYFSDSERETLQVLHAIRDNVTL------- 181

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
             +    ++    +        +  E    I    + +L+          +    + Q+  
Sbjct: 182  -SETKVVEAGQYLKDPKEIAQKFEELYPGINDHLADLLKDIRYEFDHEFKLPRFNRQRAA 240

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + EL+     GL+ +        G     Y++RL+ EL +I+ M F  YFLIV D +++ 
Sbjct: 241  KEELKELTEDGLKKK--------GLWQDIYQERLEKELQIISDMGFDDYFLIVWDLLRFG 292

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +     +G GRGS AGS+ AYAL IT IDP++ +LLFERFLN +R SMPD DID     R
Sbjct: 293  RSKGYYMGMGRGSAAGSLVAYALNITGIDPVKHNLLFERFLNKERYSMPDIDIDLPDIYR 352

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             E + YV+N+YG +  AQI+TF +  AK A+RDV +   +P  ++  L K I        
Sbjct: 353  SEFLHYVRNRYGSDHSAQIVTFSTFGAKQAIRDVFKRFGVPEYEISNLSKKIAF---KDT 409

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                   +  FR+   +   + +  EI++++EG  R  S HAAGIV+ D  L+  +P+  
Sbjct: 410  LTSIYEKNISFRQTINSRLELQKAFEIAKRIEGNPRQTSIHAAGIVMSDDLLTDHIPL-- 467

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDH 606
                ++ VTQ++   +E  GL+K DFLGL+ LT +QK  + +A+     + +  I  +D 
Sbjct: 468  KEGIEMMVTQYDAPAVEANGLLKMDFLGLRNLTFVQKMKEKVAKDFGKDIIIEEIDLEDP 527

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  L     T GIFQ E SG    L+ ++P   E+I+A  SL RPG  D    +  R+ 
Sbjct: 528  KTLELFAKGDTKGIFQFEQSGAISLLKRIKPKRFEEIVATTSLNRPGASDYTNNFIKRRR 587

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G+EKI  I P+I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK   EM 
Sbjct: 588  GQEKIDLIDPVIAPILEPTYGIMLYQEQVMQIAQVFAGFTLGKADLLRRAMSKKNLAEMK 647

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +  F+ GA++ G S+  A  +F  + KFA YGFN+SHA AY+ +++Q A+ K HYP  
Sbjct: 648  KMENDFLEGAARLGRSEETARLLFNRMEKFAGYGFNRSHAFAYSALAFQLAYFKAHYPAV 707

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F    M            +  DA + + +++P ++N    + K+  N+IY  L  IKG+ 
Sbjct: 708  FFDVIMNYSNS------DYISDALESDFKVVPLTINNIPYNDKIDSNKIYMGLKNIKGLP 761

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  I+E     PF S+E F S + +K   + +LE L   G  D F  +R ++L +LD
Sbjct: 762  RDLAYWIIEKR---PFSSIESFLSALPTKYQKKDLLEPLFAVGLFDLFESNRRKVLNNLD 818

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             +  +         ++  ++FA    ++SD          ++  +++ E+  +G   S H
Sbjct: 819  GLLIFV--------SELGSLFADSSFSWSD------CDDFSNREKYQLEENYIGIGLSPH 864

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAK 1025
            PL                + +   + +   +   +   +  +T+  G ++ ++T ++  K
Sbjct: 865  PLLEIAEK-TDQAFTPITKLL---KDSEHTILVQIEKVRIIRTKSSGQQMAFLTVTDTKK 920

Query: 1026 EYEANFFP 1033
            + +   FP
Sbjct: 921  KIDVTVFP 928


>gi|15672478|ref|NP_266652.1| DNA polymerase III DnaE [Lactococcus lactis subsp. lactis Il1403]
 gi|14194667|sp|Q9CI70|DPO3A_LACLA RecName: Full=DNA polymerase III subunit alpha
 gi|12723378|gb|AAK04594.1|AE006285_2 DNA polymerase III, alpha chain 2 [Lactococcus lactis subsp. lactis
            Il1403]
 gi|326406024|gb|ADZ63095.1| DNA polymerase III subunit alpha [Lactococcus lactis subsp. lactis
            CV56]
          Length = 1060

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 284/1033 (27%), Positives = 496/1033 (48%), Gaps = 93/1033 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS L+  + +++ L+         + I D  NL +A  F +KA    +QPI
Sbjct: 2    FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            I  +L+ + +      +              +    EGY+ L+ + +   L + G++   
Sbjct: 62   ISIELNFEWRGLPIAFS-------------FIAKDTEGYKNLLRIST---LHNYGRRQ-- 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               S +Q   + G+ ++   + G +        S VA++             ++ +    
Sbjct: 104  --FSDIQNHLS-GIALIIPETYGSLSE--LTELSSVADEA------------FIGI---- 142

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                    Q+        LP +      +L+  D E   +L AV                
Sbjct: 143  -------DQLTDKGAKFNLPTLPFPAIRYLNFADNEILAILHAVRDG--------VSFDE 187

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
               + +   +    +     L+   +  +  S +    A      +E    D +++    
Sbjct: 188  SLTISSNELLQRPEAYETYFLKYFPQALKNLSALTAKIAYQFDEKLELPRFDKKRQAVEH 247

Query: 311  LRNKAVAGLEVRLAQGAIAKGY------HAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            LR +A  GL  RL +  +              Y++RL+ EL+VI +M F  YFLIVAD +
Sbjct: 248  LREEATLGLSARLEEKNLLTEVSSVNLQDLSVYQERLEKELSVIHQMGFDDYFLIVADLL 307

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A++ +I  G GRGS AGS+ AY L IT +DP++ +L FERFLNP+R++MPD DID   
Sbjct: 308  RYAREQDIYCGMGRGSAAGSLVAYVLGITQVDPVQHNLFFERFLNPERVAMPDIDIDMPD 367

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR E++ Y++N+YG + VAQI+TF +L  + ALRDVG+A  M  +++  L +++     
Sbjct: 368  DRRAELLAYMKNRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELSNLTRMLVRRFG 427

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                     ++ RF+   L +  + R+ E+++++EG+ R  STHA+G+V+ +  L   V 
Sbjct: 428  --TLADEYENNQRFKAEVLKNGKLKRIYEVARRIEGMPRQTSTHASGVVLSEESLVNYVS 485

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            +      DL +TQ+    +E  GL+K DFLGL+ LT++ +  D + +R  + +D   I  
Sbjct: 486  L--KPSEDLALTQYEAPDVEAIGLLKIDFLGLRNLTIISRLRDLVKRRQKIDIDPLKINL 543

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D +T  L     T+GIFQ E+  MR+ L  + P   +DI+   S++RPGP   I  +  
Sbjct: 544  EDEDTLALFRAGNTMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQFIPQFVA 603

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R++GKE + ++   I  +LK T G++IYQEQ+MQ+AQ  +G+SL +AD+LRRA+ KK   
Sbjct: 604  RRHGKEIVPTVDDSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAISKKKGS 663

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            E++K +E F+  AS NG SK  A  I++L+ +FA+YGFN+SH  AY  +++Q A+ K H+
Sbjct: 664  ELEKLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAYFKAHF 723

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P EF    +      V  +     DA +   +I  PS+N   +   V + +I   LA ++
Sbjct: 724  PDEFYEIQLRDRKREVMIL-----DALENGFEIEKPSINLMKIGDFVKNKKIRLGLAHVQ 778

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL-- 901
            G+    A+ I+E   ++P+  L DF  ++ +    +  +  L+  GA D    +R +L  
Sbjct: 779  GISRDLAKWIVE---NQPYKDLADFVEKLPNNFHKKENILPLIQIGAFDYADSNRGKLAY 835

Query: 902  -LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             L    N+  Y            ++IF    G         +    + + +++ E+ +LG
Sbjct: 836  NLADHANLLNYYS----------DDIFMASSGGG---FAYHEAEDYSETEKYDFEKNLLG 882

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
               + HPL                + V   +   + +   +   +  +T+ G  + ++T 
Sbjct: 883  IGVTPHPLQNLARRFEG-NFTPLAQLV---KNRRMTILVEINYIRTHRTKTGQTMAFLTV 938

Query: 1021 SEPAKEYEANFFP 1033
            S+  + ++   FP
Sbjct: 939  SDSRENFDVTLFP 951


>gi|168485842|ref|ZP_02710350.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
            CDC1087-00]
 gi|183571027|gb|EDT91555.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
            CDC1087-00]
          Length = 1033

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 289/1022 (28%), Positives = 481/1022 (47%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                ++  L  ++ GYQ+L++L +     ++       
Sbjct: 63   GLEMTVFVDD-------------QGVNLRFLALSSVGYQQLMKLSTAKMQGEK------- 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E + ++            +F+  +  E          G   Y+ +     
Sbjct: 103  TWSVLSQYL-EDIAVIVP----------YFDRVESLE---------LGCDYYIGVYPE-- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 141  ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQD 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+AL+N  ++    S+ L     +          +  +    EL
Sbjct: 190  VFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLKLPR-------FNPARPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G         + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N 
Sbjct: 243  RERAELG--------LVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 295  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I       +   A
Sbjct: 355  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDNLKL---A 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--D 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+       +  I  +D ET  
Sbjct: 470  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMRELLAETEGIHLKIEEIDLEDKETLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +   ++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 590  VTVLDSALEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRA 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  SFIQGSIEAGHTAEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQV 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++   S+NT     K+ +  IY  L +IKG+    A
Sbjct: 710  MLNSSNS------DYLIDALEAGFEVASLSINTIPYHDKIANKSIYIGLKSIKGLSKDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E     P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 764  LWIIEHR---PYSNIEDFLAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ D              +F  EQ +LG   S HPL  
Sbjct: 821  FVKVL--------GSLFGETIYSWQDS------EDWMEQEKFYMEQELLGVGVSKHPLQA 866

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 867  ----IANKAIYPITPISNLSENSYAIILVEVQKIKVIRTKKGENMAFLQVDDSKKKLDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  LF 924


>gi|225858693|ref|YP_002740203.1| DNA polymerase III DnaE [Streptococcus pneumoniae 70585]
 gi|225721617|gb|ACO17471.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae 70585]
          Length = 1033

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 292/1022 (28%), Positives = 486/1022 (47%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                 +  L  ++ GYQ+L++L +     ++       
Sbjct: 63   GLEMTVFVDDQEVN-------------LRFLALSSVGYQQLMKLSTAKMQGEK------- 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E + ++            +F+  +  E          G   Y+ +     
Sbjct: 103  TWSVLSQYL-EDIAVIVP----------YFDRVESLE---------LGCDYYIGVYPE-- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 141  ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQD 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+AL+N  ++    S+ L     +          +  +    EL
Sbjct: 190  VFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLKLPR-------FNPARPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G         + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N 
Sbjct: 243  RERAELG--------LVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 295  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 355  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--D 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + +  I  +D ET  
Sbjct: 470  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIEEIDLEDKETLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ L+G+SL +AD+LRRAMGKK    M + + 
Sbjct: 590  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRLAGFSLGKADILRRAMGKKDASAMHEMRA 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  SFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQI 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++ P S+NT     K+ +  IY  L +IKG+    A
Sbjct: 710  MLNSANS------DYVTDALEAGFEVAPLSINTIPYHDKIANKSIYIGLKSIKGLSKDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E     P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 764  LWIIEHR---PYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDLFEKNRQKVFNNLANLFE 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ +              +F  EQ +LG   S HPL  
Sbjct: 821  FVKEL--------GSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQA 866

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 867  ----IASKAIYPITPIGNLSENSYAIILVEVRKIKVIRTKKGENMAFLQADDSKKKLDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  LF 924


>gi|223940255|ref|ZP_03632114.1| DNA polymerase III, alpha subunit [bacterium Ellin514]
 gi|223891082|gb|EEF57584.1| DNA polymerase III, alpha subunit [bacterium Ellin514]
          Length = 1420

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 269/1030 (26%), Positives = 471/1030 (45%), Gaps = 93/1030 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            ++ L +HS YS L   LS+  +++     + PA+A+TD  NL  A EF   A  AGI+P+
Sbjct: 425  YLPLNMHSYYSFLNSTLSVEGVVNLARRYELPAVALTDDGNLHGAAEFVLAAKKAGIKPV 484

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++ +                      +  V   +GY  L  L+S             
Sbjct: 485  LGVRVKV-----------------GGIPALFYVENTKGYHNLCHLLSA---------PKE 518

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRH 189
            +    L E  TEGL+ ++                             F  R Y  +  R 
Sbjct: 519  LTAREL-EGRTEGLLAVSYNR---------------------LLAPFFPGRFYFAVNSRE 556

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
               D  RE            P VA     +    D   +DV+ ++   T++ Q+   + +
Sbjct: 557  AMRDAPRE-----------WPCVAALACRYAVPGDRWKYDVVQSIRTLTLLKQEHPEKIM 605

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                + ++  EM  +F + PE L NT EIA RCSF      P  P F  ++        +
Sbjct: 606  GGQLHFRSPMEMQRMFGEHPELLVNTNEIAERCSFEFPFGPPQFPAFATRDG----LSSK 661

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR   + GLE R           A+ +R++++ EL++I  + +  YFL++ D +Q + 
Sbjct: 662  ALLRKLVMDGLEKRYKD-------RAEKHRKQVEEELSIIEEVGYEEYFLVMWDILQ-SC 713

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM---SMPDFDIDFCQD 425
            K        RGS A S+  Y L I+ + P+RF L F RFLN DRM    +PD D+DF  D
Sbjct: 714  KKEGIEWITRGSAADSLVCYCLEISGVCPIRFELYFRRFLNKDRMALNKLPDIDVDFPHD 773

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            R+D+VI  +  KYG E+ A +  F + QA+ A+ DV + L +   Q+ R  + IP+  A 
Sbjct: 774  RKDDVIDLIFKKYGEEKTAIVGGFSTYQARGAVADVAKVLGVSEFQIRRFTERIPHTAAI 833

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             ++ + + +     +  L +      LE+++ L+G  R+A  H  G+V+  +P+ +L P 
Sbjct: 834  GLT-EILKEHQECGDLPLEEDPYKSALEMAEFLDGFPRYAKMHPCGLVLSRQPMHELTPT 892

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL-IPFD 604
            +       P T ++M  +E  GLIK D L    L +++   + L QRG++ DL+   P++
Sbjct: 893  F-IANKGYPTTHYDMDAVEMIGLIKMDVLAQGGLAVMRDMDEGLRQRGIQFDLAALEPWE 951

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYN 662
            D   + +++  G   +  +ES  M           I+ +IA+VS+ RPG  +    V + 
Sbjct: 952  DKRVWEMISGGGARAVHHIESPAMVSLCRMCNVSEIDGLIAIVSVIRPGAANEQKKVKFT 1011

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R  G E     HP ++  LK T G+++Y+E ++QI +  +G     ADVLRRA+ K  +
Sbjct: 1012 RRYQGMEPPSYPHPSLEACLKSTHGLVVYEEHILQICEAFAGLPPGRADVLRRALNKYKQ 1071

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E +++ ++ FI+ A   G ++     ++EL + F  Y F K+H+ AY + +YQ+AW+K +
Sbjct: 1072 ETIEEIRQEFIASARARGHAEENIQEVWELASGFEGYAFCKAHSTAYGIEAYQSAWLKLN 1131

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YPVEF+AA ++      + +  +  +  +  +Q++PP V+ P   F   +  I   +  I
Sbjct: 1132 YPVEFMAAVLSNGKGFYDPL-VYVLECHRLGLQLLPPCVSEPGPHFVPTEKFIRVPIRYI 1190

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            KG+   T   I++    + F+SL DF  RV +       +E L+  GA D FG  R +  
Sbjct: 1191 KGLTAKTNERILKEHQQRLFESLNDFYRRVGASG---EEMELLLRVGAFDRFGKKRTEQF 1247

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
                 +++       +   K   +         +++   +    +   + + E  + GF 
Sbjct: 1248 WECQFLKRA---YGASMDLKQGWLL---PPPGMEQLPEMQLEEPSRREQLQWEAELFGFP 1301

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             SGHPL++++  +        ++    I G  + L  +++ ++      G  + ++T ++
Sbjct: 1302 VSGHPLELHEE-IAWETYCSVDKLGDHI-GEEVILCGLIIEQRMHHQTTGELMKFLTLAD 1359

Query: 1023 PAKEYEANFF 1032
                 E   F
Sbjct: 1360 WTGIIETELF 1369


>gi|225854402|ref|YP_002735914.1| DNA polymerase III DnaE [Streptococcus pneumoniae JJA]
 gi|225723770|gb|ACO19623.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae JJA]
          Length = 1033

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 287/1022 (28%), Positives = 480/1022 (46%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + D                 +  L  ++ GYQ+L++L +     ++       
Sbjct: 63   GLEMTVFVDDQEVN-------------LRFLALSSVGYQQLMKLSTAKMQGEK------- 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   +  ++++           +F+  +  E          G   Y+ +     
Sbjct: 103  TWSVLSQYLEDIAVIVS-----------YFDRVESLE---------LGCDYYIGVYPE-- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 141  ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQD 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+AL+N  ++    S+ L     +          +  +    EL
Sbjct: 190  VFISASSLEKLFQERFPQALDNLEKLISGISYDLDTSLKLPR-------FNPARPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G         + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N 
Sbjct: 243  RERAELG--------LVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 295  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 355  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--D 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+       +  I  +D ET  
Sbjct: 470  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +   ++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 590  VTVLDSALEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRA 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  SFIQGSIEAGHTAEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQV 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++   S+NT     K+ +  IY  L +IKG+    A
Sbjct: 710  MLNYSNS------DYLIDALEAGFEVASLSINTIPYHDKIANKSIYIGLKSIKGLSKDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E     P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 764  LWIIEHR---PYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ +              +F  EQ +LG   S HPL  
Sbjct: 821  FVKEL--------GSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQA 866

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 867  ----IASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  LF 924


>gi|167835340|ref|ZP_02462223.1| error-prone DNA polymerase [Burkholderia thailandensis MSMB43]
          Length = 822

 Score =  443 bits (1140), Expect = e-122,   Method: Composition-based stats.
 Identities = 231/834 (27%), Positives = 371/834 (44%), Gaps = 34/834 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++        IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAKKQGYRGIAITDECSLAGAPRMHVAAKAQGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G   D+   D       G+ P P    +VLL    EGY  L EL+S    +D  K +
Sbjct: 69  LVVGAYFDVTPDD----VAPGRDPGPGTFGLVLLAQNREGYGNLSELISW-RRMDAPKGT 123

Query: 129 VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            R+    L         L  +    +  +        + V + +L  F  LFG+R  + L
Sbjct: 124 YRLTPRMLAAPPPPFAHLRGVPDCFAILVPTY--PARADVLDAQLAWFDALFGERARLGL 181

Query: 187 -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q  R  D     +V        + LVA  +            D + A+        +  
Sbjct: 182 VQLQRALDGAHREEVRAAGERRGMRLVALGDVTMHIRSCKPLQDTMTAIRLGMP-IAECG 240

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + P+     R+          +A+  T  +   C+F L       P  I         
Sbjct: 241 HALAPNAEQHLRTRQRIAQLFPADAVAQTCRMLDACAFSLDELRYEYPHEIVPAG----H 296

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + L  +  AG   R   G        +  R+R+++EL +IA + +  YFL V D +Q
Sbjct: 297 TPASYLAQETWAGARERYPSGM------PETVRKRIEYELALIAELNYEPYFLTVYDIVQ 350

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+  NI    GRGS A SV  Y L +T++DP R +LLFERF++ +R   PD D+DF   
Sbjct: 351 YARSKNIL-CQGRGSAANSVVCYCLHVTEVDPERSTLLFERFISRERGEPPDIDVDFEHQ 409

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K        
Sbjct: 410 RREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKAHRWFDGS 469

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              L                P +    E++ +L    RH S H+ G V+    L++LVP+
Sbjct: 470 RDLLARFESV----GLDPDTPLIGAWAELAARLLNFPRHLSQHSGGFVVSRGKLTRLVPV 525

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-----DFLAQRGVKVDLSL 600
                    V Q++   +E  GL+K D L L  L+ L ++         A+ G    ++ 
Sbjct: 526 ENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMVTAWRGARDGKPFGMAH 585

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NI 658
           I   D +TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI    +
Sbjct: 586 IEQGDVKTYDMICRADTVGVFQIESRAQMSMLPRLRPRNYYDLVIEVAIVRPGPIQGGAV 645

Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             Y  R+ G E +      +   L+ T+GV I+QEQVMQIA + +G++  EAD LRRAM 
Sbjct: 646 HPYLKRRQGLEPVTYPKADLKEALERTRGVPIFQEQVMQIAIIAAGFTPGEADELRRAMA 705

Query: 719 KK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
               K  +++ + + + G  +       A  IFE +  F +YGF +SHAA++A + Y ++
Sbjct: 706 AWKRKGNIEQYRRKIVDGMRERDYPPEFAEQIFEQIKGFGEYGFPESHAASFAHLVYASS 765

Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
           W+K H P  FLAA +  +        +  QDA++  + ++P        +  + 
Sbjct: 766 WLKCHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSDWEASLE 819


>gi|322388178|ref|ZP_08061782.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus infantis
            ATCC 700779]
 gi|321140850|gb|EFX36351.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus infantis
            ATCC 700779]
          Length = 1033

 Score =  442 bits (1137), Expect = e-121,   Method: Composition-based stats.
 Identities = 295/1022 (28%), Positives = 473/1022 (46%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +         ++ I D +NL+ A  F ++    GIQP++
Sbjct: 3    AQLDTKTVYSFMESMVSIKRYVSLGKKYGYSSLGIMDEDNLYGAYYFIKECQKQGIQPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ +  +D                 +  L  +  GYQ L++L S       GK+    
Sbjct: 63   GLEMTVHHKDKWIN-------------LRFLALSNRGYQNLMKLSSLKMT---GKKEWTD 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S+L++      I +       ID                      G   Y+ +     
Sbjct: 107  FSSYLED------ICVIVPYYPEIDSVDL------------------GHDYYIGVYPDTP 142

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                              P++          ED EA  +L A+  +  + + D       
Sbjct: 143  Q------------SNFSHPILPLYRVNSFESEDLEALQMLKAIKENVTLREVDVQSQQGL 190

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
                 R E        P AL+N   + +  S+ +     +          + ++    EL
Sbjct: 191  FLPAERLEQF-FLEKFPIALDNLARLVKDTSYEIDSSLKLPR-------FNPERPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A+ GLE         KG   Q Y+ RL+ EL+VI  M F  YFL+V D +++ +   
Sbjct: 243  RERAIKGLEQ--------KGLWNQVYQVRLEEELSVIHDMGFDDYFLVVWDLLRFGRSQG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP+  +L+FERFLN +R +MPD DID     R E I
Sbjct: 295  YYMGMGRGSAVGSLVAYALDITGIDPVAKNLIFERFLNRERYTMPDIDIDIPDIYRPEFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG    AQI+T+ +  AK A+RD+ +   +P  ++  + K I +         A
Sbjct: 355  RYVRDRYGSIHAAQIVTYSTFGAKQAIRDIFKRYGVPEYELTAITKKIGS---KDTLTTA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  FR+   +     +  EI++K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLGFRQLIQSKMEYQKAFEIAKKIEGYPRQTSIHAAGVVISDKNLTDYIPLKYG--E 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT  QK  + L +       +  I  +D  T  
Sbjct: 470  DMLITQYDAHGVEGNGLLKMDFLGLRNLTFAQKMQELLYETQGISLRIEDIDLEDKATLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E  G  + L+ ++P   E+++A  SL RPG  D I  +  RK+GKEK
Sbjct: 530  LFAAGKTKGIFQFEQPGAIRLLKRVKPQNFEEVVATTSLNRPGASDYIDNFVARKHGKEK 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK   EM + +E
Sbjct: 590  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRYAGFSLGKADMLRRAMGKKNAAEMHRMEE 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI GA + G  +  A  +F ++ KFA YGFN+SHA AYA +++Q A+ KTH+P  F   
Sbjct: 650  SFIQGALEKGHGQKQAQEVFAVMEKFAGYGFNRSHAYAYAALAFQLAYFKTHFPAIFYQV 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++ P S+NT     K+ D  I+  L +IKG+    A
Sbjct: 710  MLNYASG------DYILDALEMGFELAPLSINTVPYQDKLADKTIHLGLKSIKGMPRDFA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E     PF S+EDF +R+        +L  LV  G  D F  +R ++L +L  +  
Sbjct: 764  YWIIEHR---PFSSVEDFITRLPKNYKKISLLTPLVEVGLFDGFDKNRQKILTNLPTLFI 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++FA    +++D          ++  +F+ EQ  LG   S HPL  
Sbjct: 821  FVEEL--------GSLFADSSYSWTDT------EDFSNIEKFQKEQDWLGVGISQHPLL- 865

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
               +L K  +           G    +   + S +  +T+KG  + ++  ++     E  
Sbjct: 866  ---VLAKNPLYPIVSLSELSEGQTATVLVEIQSIRVIRTKKGENMAFLKVTDSKTSLEVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  VF 924


>gi|167814068|ref|ZP_02445748.1| error-prone DNA polymerase [Burkholderia pseudomallei 91]
          Length = 848

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 239/863 (27%), Positives = 379/863 (43%), Gaps = 51/863 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129 VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            R+    L         L  +    +  +        + V + +L  F  LFG+R  + L
Sbjct: 124 YRLTPRMLAAPPRALAHLRGVPDCFAILVPTY--PARADVLDAQLAWFDALFGERARLGL 181

Query: 187 -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q  R  D     QV        + +VA  +            D + A+        +  
Sbjct: 182 VQLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMP-IAECG 240

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + P+     R+          +AL  T  +   C F L       P  I         
Sbjct: 241 HALAPNGEQHLRTRQRIAQLFPADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----H 296

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D ++
Sbjct: 297 TPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVK 350

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+  +I    GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   
Sbjct: 351 YARSKDIL-CQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQ 409

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K        
Sbjct: 410 RREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGS 469

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              L   A            P +    EI+ +L    RH S H+ G V+    L++LVP+
Sbjct: 470 RDLLARFASV----GLDPEVPLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPV 525

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDL 598
                    V Q++   +E  GL+K D L L  L+ L ++ D +               L
Sbjct: 526 ENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRL 585

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI   
Sbjct: 586 EHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGG 645

Query: 659 VVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            V+   +  +        +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD
Sbjct: 646 AVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEAD 705

Query: 712 VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            LRRAM     K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A
Sbjct: 706 ALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFA 765

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  +
Sbjct: 766 KLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASL 825

Query: 831 G----------DNRIYYSLAAIK 843
                         +   L+ ++
Sbjct: 826 EAQPGAAPPDGRPAVRLGLSLVR 848


>gi|94984363|ref|YP_603727.1| DNA polymerase III, alpha subunit [Deinococcus geothermalis DSM
            11300]
 gi|94554644|gb|ABF44558.1| DNA polymerase III, alpha subunit [Deinococcus geothermalis DSM
            11300]
          Length = 1322

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 313/730 (42%), Positives = 446/730 (61%), Gaps = 19/730 (2%)

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
             E   ++   +   HA    +R ++EL+VI  M F  YFLIVAD+I WAK   I VGPGR
Sbjct: 450  PEADDSETTRSHHQHALTVLRRAEYELSVINNMGFPDYFLIVADYIGWAKDQGISVGPGR 509

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GSGAGS+ AYA+ IT++DPL F LLFERFLNPDR+SMPDFDIDF   RR EVI YVQ KY
Sbjct: 510  GSGAGSLVAYAIRITNLDPLEFELLFERFLNPDRISMPDFDIDFNDARRGEVIGYVQGKY 569

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSR 497
            G ++VAQI TFG++ +KA L+DV R + + Y++VD++ KLIP       SL+   +    
Sbjct: 570  GDDKVAQIATFGTMASKACLKDVARVMGLEYAKVDKVSKLIPIKFGKSYSLEQAREAVPD 629

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
             ++    D  +    E +QKLEGL RHAS HAAG+VIG   L+ LVP+ RD   +  V Q
Sbjct: 630  IQQMLAEDAQLREAYEFAQKLEGLTRHASVHAAGVVIGRSQLTDLVPVMRDTSGEGMVCQ 689

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKG 616
            ++MK +E  GLIK DFLGL+TL+ L ++   + + +GV++D   IPFDD +T+ LL+   
Sbjct: 690  YDMKAVEDIGLIKMDFLGLRTLSFLDEAKRIMRESKGVEIDFDAIPFDDEKTFELLSRGD 749

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH- 675
            T G+FQLE +G+  A   ++P  + DIIAL +LYRPGP++NI  Y  R +G E +     
Sbjct: 750  TKGVFQLEGAGIADASRRLKPRRLADIIALSALYRPGPMENIPTYVRRHHGAEPVTYDEF 809

Query: 676  ----PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
                  ++ +L ET G+ +YQEQ+MQIA  ++GYSL  AD+LRRAMGKK  EEM +Q++ 
Sbjct: 810  PHSAKWLEKILAETYGIPVYQEQIMQIASEVAGYSLGGADLLRRAMGKKDAEEMKRQRQL 869

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            F+ GA KNG+ K     +F+LL  FA+YGFNKSH+AAY VI+YQTAW+K +YPVEF+AA 
Sbjct: 870  FVEGAEKNGVPKEEGNRLFDLLDAFANYGFNKSHSAAYGVITYQTAWLKANYPVEFMAAL 929

Query: 792  MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
            +T+E  + +K+ ++  DAR+ N++++PP +N    DF V    I + L AIKG+G    +
Sbjct: 930  LTVERRDSDKVAEYVSDARKMNVRVLPPDINRSSADFAVHGEEILFGLYAIKGLGEGAVQ 989

Query: 852  HIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
             I+E    + PF SL DFCSR+  K  NR+ +ESL+ +GA D FG  R QL++SL+    
Sbjct: 990  KILEEREKNGPFRSLADFCSRLGHKVCNRKAMESLIKSGAFDGFGE-RHQLMESLEEAMA 1048

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            +AQ       +  + +F   +     K+     +      R   E+  LG Y SGHPL+ 
Sbjct: 1049 WAQGAAALAQSGMDALFGMAETAPEPKLKA-GVAPYTDLQRLAIEKEALGLYISGHPLEQ 1107

Query: 971  YKPILRKMGIKGYEES------VATIRGNNIR--LAAMVVSKQQKKTRKGSRIGWVTFSE 1022
            ++  LR+       +            G  ++  LA M+ +  +K T+ G  +     ++
Sbjct: 1108 HEG-LREAASCRISDLDTWFQAQNVAPGKRVKAVLAGMIENVVKKPTKSGGMMARFILAD 1166

Query: 1023 PAKEYEANFF 1032
             + + E   F
Sbjct: 1167 ESGQTELVAF 1176



 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 81/329 (24%), Positives = 140/329 (42%), Gaps = 15/329 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAA----DQQPAIAITDTNNLFSALEFSQKACAAG 66
           F HL  H+ YSLL+GA  L ++L  +      D  PA A+TD  N+  A+ F   A   G
Sbjct: 24  FAHLHQHTQYSLLDGAAKLKDLLKWVKEVTPHD--PACAMTDHGNMHGAVHFYNYASQLG 81

Query: 67  IQPIIGCQLDIDMQDNLKMTNQ-GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           ++PI+G +  +      +   + G +    +  + LL     GYQ L  L SR Y  +  
Sbjct: 82  VKPILGYEAYVVPGFGTRRDKKPGVSGEKGIFHLTLLARDFTGYQNLCRLSSRGYT-EGY 140

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
               RI    LQE   +G+I  +G     + +         A+ RLL ++ LFG+  ++ 
Sbjct: 141 YYKPRIDHELLQE-HHQGVIAFSGCLGSEVQQLLLQGREDEAKARLLWYRDLFGENYFIE 199

Query: 186 LQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           +Q H   ++ R + +++  A    + +VATN+  ++ + D  AH+ L+A+     ++ ++
Sbjct: 200 IQDHGLPEQKRNNPILRAWAQELGIGMVATNDGHYVKKTDATAHEALLAIQTKATLADEN 259

Query: 245 RPRVTPDHYLKNRSEMVSI----FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
           R +   D +     E +           E  +NT  IA  C+  L V    +   +    
Sbjct: 260 RFKFPCDEFYVKGLEEMQKALPVAEWGEEPFDNTAHIASICNVDLPVGKKRVY-QMPALP 318

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIA 329
               +    ELR +   G   R       
Sbjct: 319 IPEGRTMAEELRVQTYRGAMKRYPAHVTE 347


>gi|319744957|gb|EFV97287.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            agalactiae ATCC 13813]
          Length = 1034

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 281/1025 (27%), Positives = 462/1025 (45%), Gaps = 102/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   + K  +     I I D +NL++A  F Q+A  A ++PI
Sbjct: 2    FAQLDTRTVYSFMDSLVDLKTYVSKSKSLGYQTIGILDHSNLYAAYHFIQEAQKANLRPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G   DI +++                 I  +     GY+ L++L +   + ++      
Sbjct: 62   VGFSFDIVVENRSI-------------EIYCIAINTVGYKNLLKLST-AQMSEK------ 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L+ L E   EG+                        + +L ++           Q + 
Sbjct: 102  MSLNLLTE-HLEGV------------------------QLILPYQDALD-------QLNL 129

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             +D      +      +  P++A +   +  + D E   +L A+  + ++          
Sbjct: 130  PFDYVIGVNLTSPQIPYTKPIIAIDTVRYFQKNDIETLQMLHAIRDNVLLKDAQYASKNQ 189

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            +        +                +              +                 E
Sbjct: 190  ELKPCQEMTLAFKERFPEALANLESLVENVTYHFDSDFKLPIFNREIPAG--------EE 241

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR                +KG  +  Y++RL+ EL +I +M F  YFLIV D +++ +  
Sbjct: 242  LRTLTQ--------NNLKSKGLWSDAYQERLEKELTIIHKMGFDDYFLIVWDLLRFGRSK 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ +YAL IT IDP++ +L+FERFLN +R SMPD DID     R E 
Sbjct: 294  GYYMGMGRGSAAGSLVSYALNITGIDPVKHNLIFERFLNEERYSMPDIDIDLPDIYRGEF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            +RYV+N+YG    AQI+TF +  AK A+RDV +       ++  + K I           
Sbjct: 354  LRYVRNRYGSMHSAQIVTFSTFGAKQAIRDVFKRFGASEYELTNITKKIHFRDNLT---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+   +     +  +I++++EG  R  S HAAG+V+ D  L+  +P+     
Sbjct: 411  VYNRNLAFRQIIDSKIEYQKAYDIAKRIEGNPRQTSIHAAGVVMSDDLLTDHIPLKNG-- 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFLAQRGVKVDLSLIPFDDHETY 609
             D+ +TQ++   +E  GL+K DFLGL+ LT +QK         G+ + L  I  +D ET 
Sbjct: 469  EDMMITQYDASSVEANGLLKMDFLGLRNLTFVQKMKEKVDKDYGISIQLETIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E SG    L  ++P+C ED++A  SL RPG  D    + NR+ GKE
Sbjct: 529  KLFAAGQTKGIFQFEQSGAINLLRRIRPECFEDVVATTSLNRPGASDYTENFINRRFGKE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  + P+I P+L+ T G+++YQEQVMQIAQ  +G++L ++D+LRRAM KK  +EM K  
Sbjct: 589  KIDLVDPVIAPILQPTYGIMLYQEQVMQIAQTYAGFTLGKSDLLRRAMSKKNSKEMQKMA 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ GA   G  +  A  IFE +AKFA YGFN+SHA AY+ +++Q A+ K HY   F  
Sbjct: 649  QSFLEGAVAKGHRQEDARLIFERMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYSDVFYD 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +            +  DA  F   I  PS+NT     ++   +IY  L  IK V    
Sbjct: 709  IMINYSNS------DYLIDAIDFGFVIEKPSINTISYRDRIYKKKIYLGLKNIKAVPNDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I   S ++PF S+EDF  R+  +      +  L+  GA D F  +R ++  +LD++ 
Sbjct: 763  AYWI---SKNQPFQSIEDFLMRLPQQFQKSGFISPLIAIGAFDEFDNNRRKITSNLDSLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             +   +         ++FA     +       +    ++S ++E EQ +LG   S HPL 
Sbjct: 820  TFVNEL--------GSLFADTSYHWL------EVEDFSNSEKYEMEQDILGVGISPHPLV 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYE 1028
                 + +   + +         +   +   +   +  +T+  G ++ ++T  +   + +
Sbjct: 866  G----ISQKASRPFIPISQVQENSEATILVQLKQVKVIRTKSSGQQMAFLTVMDINSKMD 921

Query: 1029 ANFFP 1033
               FP
Sbjct: 922  ITVFP 926


>gi|77408937|ref|ZP_00785660.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae COH1]
 gi|77172437|gb|EAO75583.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae COH1]
          Length = 1034

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 280/1025 (27%), Positives = 461/1025 (44%), Gaps = 102/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L   + K  +     I I D +NL++A  F Q+A  A ++PI
Sbjct: 2    FAQLDTRTVYSFMDSLVDLKTYVSKSKSLGYQTIGILDHSNLYAAYHFIQEAQKANLRPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G   DI +++                    +     GY+ L++L +   + ++      
Sbjct: 62   VGFSFDIVVENRSIEVY-------------CIAINTVGYKNLLKLST-AQMSEK------ 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            + L+ L E   EG+                        + +L ++           Q + 
Sbjct: 102  MSLNLLTE-HLEGV------------------------QLILPYQDALD-------QLNL 129

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             +D      +      +  P++A +   +  + D E   +L A+  + ++          
Sbjct: 130  PFDYVIGVNLTSPQIPYTKPIIAIDTVRYFQKNDIETLQMLHAIRDNVLLKDAQYASKNQ 189

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            +        +                +              +                 E
Sbjct: 190  ELKPCQEMTLAFKKRFPEALANLESLVENVVYHFDSDFKLPIFNREIPAG--------EE 241

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR                +KG  +  Y++RL+ EL +I +M F  YFLIV D +++ +  
Sbjct: 242  LRTLTQ--------NNLKSKGLWSDAYQERLEKELTIIHKMGFDDYFLIVWDLLRFGRSK 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               +G GRGS AGS+ +YAL IT IDP++ +L+FERFLN +R SMPD DID     R E 
Sbjct: 294  GYYMGMGRGSAAGSLVSYALNITGIDPVKHNLIFERFLNEERYSMPDIDIDLPDIYRGEF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            +RYV+N+YG    AQI+TF +  AK A+RDV +       ++  + K I           
Sbjct: 354  LRYVRNRYGSMHSAQIVTFSTFGAKQAIRDVFKRFGASEYELTNITKKIHFRDNLT---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                +  FR+   +     +  +I++++EG  R  S HAAG+V+ D  L+  +P+     
Sbjct: 411  VYNRNLAFRQIIDSKIEYQKAYDIAKRIEGNPRQTSIHAAGVVMSDDLLTDHIPLKNG-- 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFLAQRGVKVDLSLIPFDDHETY 609
             D+ +TQ++   +E  GL+K DFLGL+ LT +QK         G+ + L  I  +D ET 
Sbjct: 469  EDMMITQYDASSVEANGLLKMDFLGLRNLTFVQKMKEKVDKDYGISIQLEAIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E SG    L  ++P+C ED++A  SL RPG  D    + NR+ GKE
Sbjct: 529  KLFAAGQTKGIFQFEQSGAINLLRRIRPECFEDVVATTSLNRPGASDYTENFINRRFGKE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            KI  + P+I P+L+ T G+++YQEQVMQIAQ  +G++L ++D+LRRAM KK  +EM K  
Sbjct: 589  KIDLVDPVIAPILQPTYGIMLYQEQVMQIAQTYAGFTLGKSDLLRRAMSKKNSKEMQKMS 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ GA   G  +  A  IFE +AKFA YGFN+SHA AY+ +++Q A+ K HY   F  
Sbjct: 649  QSFLEGAVSKGHRQEDARLIFERMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYSDVFYD 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +            +  DA  F   I  PS+NT     ++   +IY  L  IK V    
Sbjct: 709  IMINYSNS------DYLIDAIDFGFVIEKPSINTISYRDRIYKKKIYLGLKNIKAVPNDL 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I   S ++PF S+EDF  R+  +      +  L+  GA D F  +R ++  +LD++ 
Sbjct: 763  AYWI---SKNQPFQSIEDFLMRLPQQFQKSGFISPLIAIGAFDEFDNNRRKITSNLDSLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             +   +         ++FA     +       +    ++S ++E EQ +LG   S HPL 
Sbjct: 820  TFVNEL--------GSLFADTSYHWL------EVEDFSNSEKYEMEQDILGVGISPHPLV 865

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYE 1028
                 + +   + +         +   +   +   +  +T+  G ++ ++T  +   + +
Sbjct: 866  G----ISQKASRPFIPISQVQENSEATILVQLKQVKIIRTKSSGQQMAFLTVMDINSKMD 921

Query: 1029 ANFFP 1033
               FP
Sbjct: 922  ITVFP 926


>gi|319938926|ref|ZP_08013290.1| DNA-directed DNA polymerase subunit III alpha [Streptococcus
            anginosus 1_2_62CV]
 gi|319811976|gb|EFW08242.1| DNA-directed DNA polymerase subunit III alpha [Streptococcus
            anginosus 1_2_62CV]
          Length = 1033

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 281/1023 (27%), Positives = 486/1023 (47%), Gaps = 101/1023 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + Y+ ++  +S+   ++         + I D +NL+ A  F + A   GIQP++
Sbjct: 3    AQLDTKTVYTFMDSLISIKKYVETAKNLGYQTLGIMDIDNLYGAYHFMETATEQGIQPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ +D                    +  L   ++GY+ L++L +   ++ + K     
Sbjct: 63   GVEMTLDYTGLPLN-------------LRFLALDSQGYRNLMKLSTL-KMIGKSK----- 103

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                 Q +  EG+ ++      P+           A           G   Y+ +     
Sbjct: 104  -WEEFQHLL-EGIAIIV-----PVFEDI------EALDL--------GREFYIGVFPDTP 142

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                                +      +    D E   +L A+  ++ +  +       +
Sbjct: 143  K------------KAFSHATLPLQTVRYFDAGDLETLQMLCAIRENSSLR-EVGNLPNHE 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            + L +     S   + PE+L+N   +     + +     +          + ++    EL
Sbjct: 190  YLLSSEQFTQSFQENYPESLDNLKRLVAGIHYEINTELKLPR-------FNPERPAAEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            + +A AGLE +     +        Y++RL  EL+V+ +M F  YFLIV D +++ +   
Sbjct: 243  QERAEAGLEKKRLNSLV--------YKERLQQELSVVHQMGFDDYFLIVWDLLRFGRSQG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP+  +LLFERFLN +R +MPD DID     R E I
Sbjct: 295  YYMGMGRGSAVGSLVAYALEITGIDPVEKNLLFERFLNVERYTMPDIDIDIPDIYRPEFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + + I           A
Sbjct: 355  RYVRDRYGTMHAAQIVTYSTFGAKQAIRDVFKRYGVPEYELTNITRKISFRDNLT---SA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  FR+   +     +  EI++K+EG  R  S HAAG+V+ D  L+  +P+      
Sbjct: 412  YEKNMSFRQIINSKLEYQKAFEIAKKIEGNPRQTSIHAAGVVMSDNDLTDHIPLKYG--E 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYH 610
            D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +   ++  V +D++ I  +D  T  
Sbjct: 470  DMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEAALEKYGVAIDIAKINLEDAATLQ 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E +G    L+ +QP   E+++A  SL RPG  D I  +  RK+G+EK
Sbjct: 530  LFAAGRTKGIFQFEQAGAINLLKRVQPAQFEEVVATTSLNRPGASDYIDNFVRRKHGQEK 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P ++ +L  T G+++YQEQVMQ+AQ   G+SL +AD+LRRAMGKK   EM K + 
Sbjct: 590  VEMLDPSLEDILAPTYGIMLYQEQVMQVAQRFGGFSLGKADILRRAMGKKNIAEMHKMEA 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++GA + G S+T A  +F ++ KFA YGFN+SHA AY+ +++Q  + K HYP  F   
Sbjct: 650  EFVTGALELGHSETKAKEVFAVMEKFAGYGFNRSHAYAYSALAFQLTYFKAHYPDIFFDI 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +F+ Q+   ++N      K  D +IY  L  IKG+    A
Sbjct: 710  MLN------YSSSDYITDALEFDFQVASLNINNIPYRDKFQDKQIYLGLKNIKGLPRDFA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++PF ++EDF  ++ ++    +++  LV  G  D F  +R ++LQ+L N+  
Sbjct: 764  YWIIE---NRPFTNVEDFIMKLPTQYHKIQLITPLVQVGLFDVFEKNRQKILQNLPNLFV 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            +A  +         ++FA    ++++            + +FE E+ ++G   S HPL  
Sbjct: 821  FADEL--------GSLFADTNYSWTEA------EDYTEAEKFELEKEIIGVGLSEHPL-- 864

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                L K   + +      +  N+  +   ++S +  +T+ G  + ++  S+  ++ E  
Sbjct: 865  --VKLAKTATQSFTPIQELVENNHATILGEILSIRVIRTKTGENMAFLQVSDAKRKMEVT 922

Query: 1031 FFP 1033
             FP
Sbjct: 923  VFP 925


>gi|281490990|ref|YP_003352970.1| DNA polymerase III subunit alpha [Lactococcus lactis subsp. lactis
            KF147]
 gi|281374748|gb|ADA64268.1| DNA polymerase III, alpha subunit [Lactococcus lactis subsp. lactis
            KF147]
          Length = 1060

 Score =  440 bits (1132), Expect = e-121,   Method: Composition-based stats.
 Identities = 281/1033 (27%), Positives = 494/1033 (47%), Gaps = 93/1033 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS L+  + +++ L+         + I D  NL +A  F +KA    +QPI
Sbjct: 2    FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            I  +L+ + +      +              +    EGY+ L+ + +   L + G++   
Sbjct: 62   ISIELNFEWRGLPIAFS-------------FIAKDTEGYKNLLRIST---LHNYGRRQ-- 103

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               S +Q   + G+ ++   + G +        S VA++             ++ +    
Sbjct: 104  --FSDIQNHLS-GIALILPETYGSLSE--LTELSSVADEA------------FIGI---- 142

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                    Q+        LP +      +L+  D E   +L AV        +     + 
Sbjct: 143  -------DQLTDKGAKFNLPTLPFPAIRYLNFADNEILAILHAVRDGVP-FDESLTISSN 194

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            +   +  +         P+AL+N   +  + ++            +     D +++    
Sbjct: 195  ELLQRPEAYETYFQKYFPQALKNLSALTAKIAYQFDE-------KLVLPRFDKKRQAVEH 247

Query: 311  LRNKAVAG------LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            LR +A  G       +  L   + A       Y++RL+ EL+VI +M F  YFLIVAD +
Sbjct: 248  LREEATLGLSARLEEKKLLTDVSSANLQDLSVYQERLEKELSVIHQMGFDDYFLIVADLL 307

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            ++A++  I  G GRGS AGS+ AY L IT +DP++ +L FERFLNP+R++MPD DID   
Sbjct: 308  RYAREQEIYCGMGRGSAAGSLVAYVLGITQVDPVQHNLFFERFLNPERVAMPDIDIDMPD 367

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            DRR E++ Y++N+YG + VAQI+TF +L  + ALRDVG+A  M  +++  L +++     
Sbjct: 368  DRRAELLAYMKNRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELSNLTRMLVRRFG 427

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                     ++  F+   L +  + R+ E+++++EG+ R  STHA+G+V+ +  L   V 
Sbjct: 428  --TLADEYENNQHFKAEVLKNGKLKRIYEVARRIEGMPRQTSTHASGVVLSEESLVNYVS 485

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPF 603
            +      DL +TQ+    +E  GL+K DFLGL+ LT++ +  D + +R    +D   I  
Sbjct: 486  L--KPSEDLALTQYEAPDVEAIGLLKIDFLGLRNLTIISRLRDLVKRRQKNDIDPLKINL 543

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            +D +T  L     T+GIFQ E+  MR+ L  + P   +DI+   S++RPGP   I  +  
Sbjct: 544  EDEDTLALFRAGNTMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQFIPQFVA 603

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R++GKE + ++   I  +LK T G++IYQEQ+MQ+AQ  +G+SL +AD+LRRA+ KK   
Sbjct: 604  RRHGKEIVPTVDDSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAISKKKGS 663

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            E++K +E F+  AS NG SK  A  I++L+ +FA+YGFN+SH  AY  +++Q A+ K H+
Sbjct: 664  ELEKLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAYFKAHF 723

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P EF    +      V  +     DA +   +I  PS+N   +   V + +I   LA ++
Sbjct: 724  PDEFYEIKLRDRKREVMIL-----DALENGFEIEKPSINLMKIGDFVKNKKIRLGLAHVQ 778

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL-- 901
            G+    A+ I+E   ++P+  L DF  ++ +    +  +  L+  GA D    +R +L  
Sbjct: 779  GISRDLAKWIVE---NQPYKDLADFVEKLPNNFHKKENILPLIQIGAFDYADSNRGKLAY 835

Query: 902  -LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
             L    N+  Y            ++IF    G         +    + + +++ E+ +LG
Sbjct: 836  NLADHANLLNYYS----------DDIFMASSGGG---FAYHEAEDYSETEKYDFEKNLLG 882

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
               + HPL                + V   +   + +   +   +  + + G  + ++T 
Sbjct: 883  IGVTPHPLQNLARRFEG-NFTPLAQLV---KNRRMTILVEINYIRTHRAKTGQTMAFLTV 938

Query: 1021 SEPAKEYEANFFP 1033
            S+  + ++   FP
Sbjct: 939  SDSRENFDVTLFP 951


>gi|226327033|ref|ZP_03802551.1| hypothetical protein PROPEN_00894 [Proteus penneri ATCC 35198]
 gi|225204251|gb|EEG86605.1| hypothetical protein PROPEN_00894 [Proteus penneri ATCC 35198]
          Length = 584

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 238/593 (40%), Positives = 346/593 (58%), Gaps = 23/593 (3%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +   P F+HL+VHS YS+++G      ++ K+A+   PA AITD  NL   ++F   A  
Sbjct: 1   MAD-PRFIHLRVHSDYSMIDGLAKTGPLVKKVASLGMPAFAITDFTNLCGLVKFYGAAHG 59

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGI+PIIG  + ++ +                  + +L     GYQ L  L+S  Y    
Sbjct: 60  AGIKPIIGADVYLETE----------LLGDEYAHLTILARNNVGYQNLTLLISEAYKHGY 109

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
           G     I   WL     EGL++L+GG  G + +     +  + ++ L  ++  F D  Y+
Sbjct: 110 GAAGPTIKQEWLTTY-KEGLLLLSGGRMGDVGKFLLRGNRALVDQCLEYYQTHFPDSYYL 168

Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            L R    D      + V LA    LP+VATN+  FL  +D++AH++ +A+     +S  
Sbjct: 169 ELIRTGRTDEETYLHEAVALASEKGLPVVATNDVCFLDSDDFDAHEIRVAIHDGFTLSDP 228

Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            RP+  +P  Y++   EM  +F+D+PEALEN+VEIA+RC+  +++       +   +   
Sbjct: 229 KRPKNYSPQQYMRTEEEMCELFADIPEALENSVEIAKRCNVTIRLGE-----YFLPQFPT 283

Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFLI
Sbjct: 284 GNMSTEDFLVKKSQEGLEERLAFLFPDPEERKKRRPEYDERLDIELKVINQMGFPGYFLI 343

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V +FIQW+K N +PVGPGRGSGAGS+ AY+L ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYSLKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           +DFC ++RD VI +V   YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+
Sbjct: 404 VDFCMEKRDRVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLV 463

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
           P DP   +  +A A + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    +
Sbjct: 464 PPDPGMTLE-KAFAAEPQLPEIYEADEEVKSLIDMARKLEGVTRNAGKHAGGVVISPTKI 522

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
           +   P+Y D   + PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +  R
Sbjct: 523 TDFAPLYCDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINAR 575


>gi|167561429|ref|ZP_02354345.1| error-prone DNA polymerase [Burkholderia oklahomensis EO147]
          Length = 837

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 234/835 (28%), Positives = 378/835 (45%), Gaps = 36/835 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S + ++++  A     IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSADELVERAKAHGYRGIAITDECSLAGAPRMHVAANAKGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G   D+   D       G  P P    +VLL    EGY  L EL+S    +D  K +
Sbjct: 69  LVVGAYFDVTPDD----VAPGHDPGPGAFGLVLLARNREGYGNLSELISW-RRMDAPKGT 123

Query: 129 VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            R+    L    +    L  +    +  +        + + + +L  F  LFG+R  + L
Sbjct: 124 YRLTPRMLAAPPSTFAHLRGVPDCFAILVPTY--PARADMLDAQLAWFDALFGERARLGL 181

Query: 187 -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQKD 244
            Q  R  D     ++        + +VA  +    +       D + A+     +     
Sbjct: 182 VQLQRALDGAHREEIRAAGERRGMRIVALGDVTMHARSCKPLQDAMTAIRLGMPIAECGY 241

Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                 + +L+ R  +  +F    EA+  T  I   C F L       PR +  E     
Sbjct: 242 ALAPNAEQHLRLRQRIAQLFP--AEAIAETCRILDACDFSLDELRYEYPRELVPEG---- 295

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               + LR +  +G   R   G           ++R+ +EL +IA +K+  YFL V D +
Sbjct: 296 HTPTSYLRRETWSGAHRRYPDGV------PDTVQERIRYELELIAELKYEPYFLTVYDIV 349

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           Q+A+  +I    GRGS A SV  + L +T++ P + SLLFERF++ +R   PD D+DF  
Sbjct: 350 QYARSRDIL-CQGRGSAANSVVCFCLGVTEVHPEKSSLLFERFISRERGEPPDIDVDFEH 408

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K       
Sbjct: 409 QRREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDG 468

Query: 485 HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
               L                P +    E++ +L G  RH S H+ G VI    L++LVP
Sbjct: 469 SRDLLARFESV----GLDPDTPLIRAWAELAARLLGFPRHLSQHSGGFVISRGKLTRLVP 524

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL-----DFLAQRGVKVDLS 599
           +         V Q++   +E  GL+K D L L  L+ L ++          + G    + 
Sbjct: 525 VENAAMEGRRVIQWDKNDLEALGLMKVDVLALGMLSALHRAFDMITAWRGRRDGQPFGME 584

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--N 657
            IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI    
Sbjct: 585 SIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRDYYDLVIEVAIVRPGPIQGGA 644

Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
           +  Y  R+ G E +      + P L+ T+GV I+QEQVMQIA + +G++  EAD LRRAM
Sbjct: 645 VHPYLKRRQGLEPVTYPKDDLKPALERTRGVPIFQEQVMQIAIIAAGFTPGEADALRRAM 704

Query: 718 GKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
                K  +++ + + + G  +       A  IFE +  F +YGF +SHAA++A + Y +
Sbjct: 705 AAWKRKGNLEQYRRKIVDGMRERDYPPEFAEQIFEQIKGFGEYGFPESHAASFAHLVYAS 764

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
           +W+K H P  F+AA +  +        +  QDA++  + ++P        D  + 
Sbjct: 765 SWLKCHEPAIFVAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATASGWDASLE 819


>gi|322376497|ref|ZP_08050990.1| DNA polymerase III, alpha subunit [Streptococcus sp. M334]
 gi|321282304|gb|EFX59311.1| DNA polymerase III, alpha subunit [Streptococcus sp. M334]
          Length = 1042

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 289/1022 (28%), Positives = 480/1022 (46%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S++  +          +A+ D +NL+ A +F +     GI P++
Sbjct: 12   AQLDTKTVYSFMESVISIDKYVRAAKDYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 71

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + +                 +  L  ++ GYQ+L++L +     ++       
Sbjct: 72   GLEMTLLVDEQEVN-------------LRFLALSSVGYQQLMKLSTAKMQGEK------- 111

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   +  I +       I+                      G   Y+ +     
Sbjct: 112  TWSVLSQYLED--IAVIVPYFEEIESLNL------------------GYDYYIGVYPETL 151

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
               +    +         PL   N   F S +      +     +  +     R R    
Sbjct: 152  TSEFHHPIL---------PLYRVN--AFESRDREVLQVLTAIKENLPLREVPLRSRQDV- 199

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+ALEN  ++    S+ L     +          +  +    EL
Sbjct: 200  -FISASSLEKLFQERFPQALENLEKLISGISYDLDTSLKLPR-------FNPARPAVEEL 251

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  GL          KG   ++Y+ RLD EL VI  M F  YFL+V D +++ + N 
Sbjct: 252  RERAELGLAQ--------KGLTGKEYQDRLDQELAVIHDMGFDDYFLVVWDLLRFGRSNG 303

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 304  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 363

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 364  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 420

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 421  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKHG--D 478

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   VK+ ++ I  +D ET  
Sbjct: 479  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGVKIVINEIDLEDKETLA 538

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 539  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 598

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 599  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRA 658

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 659  SFIQGSLEAGHTAEKAEKVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQV 718

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    A
Sbjct: 719  MLNSSNS------DYLMDALEAGFEVAPLSINTIPYHDKIANKSIYLGLKSIKGVSKDLA 772

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 773  LWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE 829

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ +              +F  EQ +LG   S HPL  
Sbjct: 830  FVKEL--------GSLFGDTIYSWQES------EDWTGQEKFYMEQELLGVGVSKHPLQA 875

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            ++  +   +   +  +T+KG  + ++   +  K+ +  
Sbjct: 876  ----IASKAIYPITPIGNLSENSHSIILVEIQKIKIIRTKKGENMAFLQVDDSKKKLDVT 931

Query: 1031 FF 1032
             F
Sbjct: 932  LF 933


>gi|225856560|ref|YP_002738071.1| DNA polymerase III DnaE [Streptococcus pneumoniae P1031]
 gi|225724719|gb|ACO20571.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae P1031]
          Length = 1033

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 287/1022 (28%), Positives = 479/1022 (46%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + + +                 +  L  ++ GYQ+L++L +     ++       
Sbjct: 63   GLEMTVFVDEQEVN-------------LRFLSLSSVGYQQLMKLSTAKMQGEK------- 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   E + ++            +F+  +  E          G   Y+ +     
Sbjct: 103  TWSVLSQYL-EDIAVIVP----------YFDRVESLE---------LGCDYYIGVYPE-- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                       LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 141  ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQD 189

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             ++   S         P+AL+N  ++    S+ L     +          +  +    EL
Sbjct: 190  VFISASSLEKLFQECFPQALDNLEKLISGISYDLDTSLKLPR-------FNPARPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  G         + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N 
Sbjct: 243  RERAELG--------LVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 295  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 355  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYKLSAITKKISFRDN---LKSA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--D 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+       +  I  +D ET  
Sbjct: 470  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETLD 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  +   ++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 590  VTVLDSALEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRA 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  SFIQGSIEAGHTAEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQV 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++   S+NT     K+ +  IY  L +IKG+    A
Sbjct: 710  MLNYSNS------DYLIDALEAGFEVASLSINTIPYHDKIANKSIYIGLKSIKGLSKDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E     P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 764  LWIIEHR---PYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFE 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F     ++ +              +F  EQ +LG   S HPL  
Sbjct: 821  FVKEL--------GSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQA 866

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 867  ----IASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  LF 924


>gi|116878540|ref|YP_357154.2| DNA polymerase III subunit alpha [Pelobacter carbinolicus DSM 2380]
 gi|114843176|gb|ABA88984.2| DNA polymerase III, alpha subunit [Pelobacter carbinolicus DSM 2380]
          Length = 1047

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 289/1038 (27%), Positives = 449/1038 (43%), Gaps = 96/1038 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL VHS++S   G  S   +     A     +A+TD N ++    F + A  AGI P+
Sbjct: 35   FTHLHVHSAFSPNWGIHSPATLCAAAKAAGMTRLALTDRNGMYGIPCFLEAAQKAGIAPL 94

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +                         VLL    +GY  L  L+S ++          
Sbjct: 95   IGAEA-----------------VSGSQRAVLLARNQDGYANLCRLLSALHDPQPF----- 132

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              L+       EGL +L+                      L    +   + L+V      
Sbjct: 133  -DLAVALATWREGLYILSDN-----------------AAVLGRLAEQSREGLFVETSPGH 174

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              ++        LA    LP VAT+ ++FL   D + H VL A+A +T +S+        
Sbjct: 175  RMEQAMF-----LARRLGLPPVATSRAVFLQNADIKTHRVLRAIAGNTTLSRLSAETCAG 229

Query: 251  DHYLKNRSEM-VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                        + F   PEALEN   IA  C       A I PRF         ++   
Sbjct: 230  PADFLRAETDLKAAFPHYPEALENAARIADNCQTNWDFSATIFPRFRGL----ADQQAST 285

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L  +A  G            G        RL  EL +I    F+ YFL+V +  + +  
Sbjct: 286  LLERRAHEGAIR-------RYGEMNTKIAARLSKELTIIRDKGFAHYFLVVQELAKRS-- 336

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
               P   GRGS A S+ AY L IT +DPLR++L FERFLN  R+  PD DIDF  D RD 
Sbjct: 337  ---PRTCGRGSAAASLVAYCLGITHVDPLRYNLFFERFLNKGRIDPPDIDIDFPWDERDA 393

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V+ +   +YG++R A +      +++ ALR+V +   MP  ++  + + + +  +     
Sbjct: 394  VLDFAFQRYGNQRAAMVANQVGFKSRGALREVAKVFGMPADEIKTITRRLSSHWSIQRGT 453

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            +A+     FR   L+    D L  I+ +L G  RH S H  G+VI    + Q VP     
Sbjct: 454  KAMDSHPLFRGESLSSDWQDIL-AIATRLNGQLRHLSQHCGGLVIVPDDIRQYVPTE-VS 511

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--GVKVDLSLIPFDDHE 607
                P+ Q+     E AGL+K D LG ++L +++ +L  +           +  P  D +
Sbjct: 512  AKGRPLIQWEKDQTEAAGLVKIDILGNRSLAVIRDALTAVHHHTGNNIDYRNWQPLTDAK 571

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDC--------IEDIIALVSLYRPGPIDNIV 659
            T  LL +  T+G F +ES   RQ L+ M  +          E ++   S+ RP   + I 
Sbjct: 572  TRALLCSGDTIGCFYIESPATRQLLKKMWGNRPMPDEDTLFEHLVMASSIIRPAANNVIR 631

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  R +GK     +HPL++P+L ET G+ +YQEQ+ QIA  LSG+S SE D LR+ + K
Sbjct: 632  EFVARMHGK-PWHHLHPLLEPILDETYGLAVYQEQITQIAMALSGFSASEGDRLRKIISK 690

Query: 720  KIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K K +  D  ++RF+ G ++NGIS  +   I++ +  FA Y F K H+A+YA++S + AW
Sbjct: 691  KDKGKTLDDYRQRFMQGGNRNGISAAVLKKIWQQVLSFAGYSFCKPHSASYALVSCKAAW 750

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
            +K ++P EF+AA ++           +  +AR+  + I+ P +NT    ++  D  +   
Sbjct: 751  LKANHPAEFMAAVIS-NGGGYYTPLGYLSEARRMGLHILTPDINTSDRAYRGKDRDLRIG 809

Query: 839  LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            L  I  V   T   I+ E   + PF   E+F  R+    L    ++ L+ AG  D    S
Sbjct: 810  LMQIAAVAQATIEVILNERRKNGPFSDYENFLWRLPH--LPVADIKQLIKAGCFDALEGS 867

Query: 898  --RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R  L+  L         +++      + +F  E          +  +++        E
Sbjct: 868  EQRPGLIWRL-------LQLQRGPATAADTLFVTEPEPPPVLPPYDAVTLQT------QE 914

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
               LG     HPL  Y   +R  G     E    I G +I L    V+ +  +T KG  +
Sbjct: 915  LETLGMPVGSHPLVPYAEAIRSSGAVPAAELSRWI-GRHITLVGWWVTGKPVRTVKGQPM 973

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +VTF +    ++A FFP
Sbjct: 974  EFVTFEDATALFDATFFP 991


>gi|24379620|ref|NP_721575.1| DNA polymerase III DnaE [Streptococcus mutans UA159]
 gi|24377571|gb|AAN58881.1|AE014956_2 DNA polymerase III, alpha chain [Streptococcus mutans UA159]
          Length = 1034

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 279/1025 (27%), Positives = 472/1025 (46%), Gaps = 102/1025 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS ++  + L + + K        I I D +NL+ A  F ++A    + PI
Sbjct: 2    FAQLDTKTVYSFMDSLIDLKSYIKKAKEMGYSHIGIMDGDNLYGAFHFIKEAQKEKLVPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G +LD+ + D+L               +  +     GY  L+++ +   +  Q      
Sbjct: 62   LGLELDLFLSDDLTT-------------VCFIAQNTIGYHNLLKIST-AKMTGQQ----- 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               S ++E   +GL ++     G        +               F    Y+ +    
Sbjct: 103  -LFSDIEEFM-DGLAIIVPYFEGI-------DQMD------------FPFSFYIGV---- 137

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
               R    Q+       +  ++  +   +   +D E   +L A+  +  + +        
Sbjct: 138  ---RKDTPQL-----DFKRDILPLHTVRYYDNDDTETLQILHAIRDNLPLREVPPVSKDQ 189

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              + +   E +         L     +A                  +            E
Sbjct: 190  YLFSQEEMEQIFEERFPQSLLNLEKLVANVSYQFDTDLKLPRFSRDKPAVV--------E 241

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L+  A  G         + K   + DY++RL  EL VI +M F  YFLIV D +++ +  
Sbjct: 242  LKELAQKG--------LVEKKLLSDDYQKRLSDELAVIHQMGFDDYFLIVWDLLRFGRSQ 293

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            +  +G GRGS AGS+ AYAL IT IDP++  LLFERFLN +R SMPD DID     R + 
Sbjct: 294  HYYMGMGRGSAAGSLVAYALDITGIDPVKNDLLFERFLNEERYSMPDIDIDLPDIYRSQF 353

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV+++YG    AQI+TF +  A+ A+RDV +       ++ ++ K I           
Sbjct: 354  LNYVRDRYGSTHSAQIVTFSTFGARQAIRDVFKRFGATEYELSQITKKISFRDNLT---S 410

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                   FR+   +     R  EI++K+EG  R  S HAAGIV+ D  L+  +P+     
Sbjct: 411  VYDKKIAFRQLINSKIEYQRAFEIAKKIEGNPRQTSIHAAGIVMSDDNLTDHIPLKTG-- 468

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETY 609
             ++ +TQ++   +E  GL+K DFLGL+ LT +QK  + +AQ     +D+  I  +D ET 
Sbjct: 469  EEMMITQYDAPAVEANGLLKMDFLGLRNLTFIQKMQEKVAQDYGHAIDIRAIDLEDKETL 528

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L     T GIFQ E++G    L+ ++P   E+++A  SL RPG  D    +  RK G+E
Sbjct: 529  ALFAAGDTKGIFQFEAAGAINLLKRIKPSRFEEVVATTSLNRPGASDYTENFIRRKYGQE 588

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++  I   I  +LK T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK   EM K +
Sbjct: 589  EVDLIDSSIASILKSTYGIMLYQEQVMQIAQIFAGFTLGKADLLRRAMSKKNTVEMQKME 648

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + F+ GA + G    +A N+F  +AKFA YGFN+SHA AY+ +++Q A+ K HYP  F  
Sbjct: 649  KDFLQGADQLGRDLKVAQNLFARMAKFAGYGFNRSHAYAYSALAFQMAYFKVHYPAVFFD 708

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              +            +  +A + + ++ P S+NT     K+   +IY  L  IKG+    
Sbjct: 709  VMLN------YSSGDYLSNALETHFKLGPLSINTIPYSDKISHGQIYLGLKNIKGLNRDF 762

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A  I+    ++PF S+EDF  R+  K     ++  L+  G  D F  +R +++ +L+++ 
Sbjct: 763  AYWII---GNRPFSSIEDFLIRIPEKYQKTEIITPLIQVGLFDQFDKNRQKIVVNLEHLF 819

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
             +   +         ++FA     + +           ++ +++ EQ ++G   S HPL 
Sbjct: 820  TFVNEL--------GSLFADSSYNWIEA------QDYTNAEKYQLEQDIIGAGVSPHPL- 864

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYE 1028
                 + K   +        + GN   + A + S +  +T+ +G ++ +++ ++  K+  
Sbjct: 865  ---IEIAKHSSRHLIALTDLVEGNEATILAQIESIRIIRTKSRGEQMAFLSVTDTKKKLN 921

Query: 1029 ANFFP 1033
               FP
Sbjct: 922  ITLFP 926


>gi|184200802|ref|YP_001855009.1| error-prone DNA polymerase [Kocuria rhizophila DC2201]
 gi|183581032|dbj|BAG29503.1| error-prone DNA polymerase [Kocuria rhizophila DC2201]
          Length = 1235

 Score =  438 bits (1127), Expect = e-120,   Method: Composition-based stats.
 Identities = 260/1150 (22%), Positives = 462/1150 (40%), Gaps = 142/1150 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F HL V S++S   G      +    A      +A TD + L+ A++        GI P+
Sbjct: 3    FPHLHVASAFSAHYGVARPEELARAAAGQGAEILACTDRDGLYGAVKHVLACQEHGIAPV 62

Query: 71   IGCQLD----------------------------------------------------ID 78
            +G  L                                                     + 
Sbjct: 63   LGVDLALLREPVQHAGAPGGARPRAGSTPQRGGAVRPGGNPVPARGNGSGPGSGSAGPVR 122

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEG---YQRLIELVSRMYL-LDQGKQSVR-ICL 133
                     +       V  +V+L +  +G   Y  L  LVS  +   D+   S   +  
Sbjct: 123  PGSAAARGGRRTAAPRVVGRVVVLATGHDGGSGYAALCRLVSAAHRSHDRAAASPIGLTA 182

Query: 134  SWLQEIGTE-------GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-KLFGDRLYVN 185
            + L             GL++L G       R       + A + L  ++ +L    L V 
Sbjct: 183  AQLARHVHRAARSGEPGLVVLVG-PDSDAGRLLARRHYRGAREALNRWRARLPPGALVVE 241

Query: 186  LQRHRGYDRYRES-----QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
               H        S     ++ +L    ++P+V +N   +         DVL A      +
Sbjct: 242  TTTHLAPQGEALSTGHAVRLYELGRAADVPVVLSNAVRYAHPGQAVTADVLDAARTLMSL 301

Query: 241  SQ---KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             +    DR  + P+     +                 V+       ++  H       ++
Sbjct: 302  DELAGADRGVLQPNGQGWLKDGPRMERLAHEIVTAARVDRDTPARLLVDTHHLAERCRLD 361

Query: 298  KECD--------------DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQR 340
             + D               +  + + EL  +  AGL    A         G + +  R+R
Sbjct: 362  PQGDLGIGTPVIPEASVLGLSGDPDRELARRCYAGLARLHAGEDWDRTVPGLNRESLRER 421

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            L+ EL+VI+++ F+GYFL V +        ++     RGSG  S+  + L I+  DPL +
Sbjct: 422  LERELSVISQLGFAGYFLTVGEVSDLMSAMDVR-HAARGSGVSSLVVHLLGISPADPLEY 480

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             L+FERFL+P R ++PD DID    RR +V R +  ++G  RV  +    + +++ A+RD
Sbjct: 481  DLVFERFLSPLRPNLPDIDIDMESARRHDVYRRIFERFGPRRVTLMSMQNAYRSRGAVRD 540

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA---DPSVDRLLEISQK 517
             G AL +    VD +   +   P   +  + I+              +  +D L++++++
Sbjct: 541  AGLALGLGPQDVDHVAGQLWRVPGGTL-REEISRRPELAPLAQRLRDNRQMDLLVDLTER 599

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            L+ L RH S H  G+++ D  L    P+       LP++Q++   ++  GLIK D LG++
Sbjct: 600  LDRLPRHISMHPCGVILSDTTLLDRTPVQ-ASGIGLPMSQYDKHDMDPMGLIKLDILGVR 658

Query: 578  TLTLLQKSLDFLAQRGVK---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
              + L  ++  +A+        DL  +P DD +T+ L+++  TLG FQ+ES G R+ +  
Sbjct: 659  MQSTLAHAVAEVARLHPHEALPDLDTMPRDDPDTFRLISSTHTLGCFQIESPGQRELIGT 718

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            M P+   D++  +SL+RPGP+   +   Y + ++G    V  HP ++ +L ET+GV +Y 
Sbjct: 719  MGPEEFNDLVVDISLFRPGPMQANMVRPYLDARHGWSTPVYPHPDLEEILAETRGVAVYH 778

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            EQ+M+I   ++G  L  ADV RR +G       +  +  F  GA   G ++ +   ++E+
Sbjct: 779  EQIMRIMDRMTGCGLGRADVWRRLLGSPG---EEPVETAFREGARARGYTRAVIDTVWEI 835

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            L  F  +GF K+H  A+AV +YQ+AW+KTH+P  F+A     +       +    +AR+ 
Sbjct: 836  LHAFGSFGFCKAHGVAFAVPTYQSAWLKTHHPEAFMAGVWEHDPGMYPA-RLLVGEARRM 894

Query: 813  NIQIMPPSVNTPCVDFKVG----------------------DNR--IYYSLAAIKGVGTT 848
             I ++ P VN      +V                       D    I  SL+AI G+ + 
Sbjct: 895  GIPVLGPDVNRSGEHHRVEAVTPRPGTVVSGDLDAGIPHTQDGAWGIRMSLSAITGISSA 954

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY------SRMQLL 902
                ++   A +P+   E+  +     + +RR L+ L  AGALD   +      SR  ++
Sbjct: 955  EIERLL---AGQPY---ENLAAVRARARPSRRSLQRLATAGALDGLLHGSGTRASRADMV 1008

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
              L +  +        RT   +   A   G         +        R   E   +   
Sbjct: 1009 HFLTDRAQLPARGSAGRTGPGQGQLALPLGDVDLTSLPARLPELTPQERVRAEMETMDIE 1068

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             S H +D +  ++R       ++ +    G+ + +A + VS      R G R+ +++  +
Sbjct: 1069 VSAHLMDSHAELVRAYRATRAQDLLGLRSGSEVVVAGVRVSTMTPPMRSGRRVVFISLDD 1128

Query: 1023 PAKEYEANFF 1032
             +   +  FF
Sbjct: 1129 GSGAVDCTFF 1138


>gi|302546169|ref|ZP_07298511.1| LOW QUALITY PROTEIN: DNA polymerase III, alpha subunit [Streptomyces
            hygroscopicus ATCC 53653]
 gi|302463787|gb|EFL26880.1| LOW QUALITY PROTEIN: DNA polymerase III, alpha subunit [Streptomyces
            himastatinicus ATCC 53653]
          Length = 880

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 253/706 (35%), Positives = 389/706 (55%), Gaps = 29/706 (4%)

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
             FL+VADFI WAK N I VGPGRGS AGS+ +YAL ITD+DP+   L+FERFLNP+R+SM
Sbjct: 55   NFLVVADFIMWAKNNGIAVGPGRGSAAGSIVSYALGITDLDPVEHGLIFERFLNPERVSM 114

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD DIDF + RR EVIRYV  KYG ++VAQI T+G+++AK A++D  R L  PY+  DR+
Sbjct: 115  PDVDIDFDERRRGEVIRYVTEKYGADKVAQIGTYGTIKAKNAIKDSARVLGYPYAMGDRI 174

Query: 476  CKLIPND---PAHPVSLQAIADDS------RFREARLADPSVDRLLEISQKLEGLYRHAS 526
             K +P D      P+S                R     +P V ++++ ++ +EGL R   
Sbjct: 175  TKAMPADVLGKGIPLSGITDEKHPRYSEAGEVRGMYENEPDVKKVIDTARGIEGLVRQMG 234

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             HAAG+++    ++  VP++        VTQ++    E  GL+K DFLGL+ LT++  ++
Sbjct: 235  VHAAGVIMSSETVTDHVPVFSPKNDGQVVTQWDYPTCESLGLLKMDFLGLRNLTIMDDAV 294

Query: 587  DFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
              +   +GV + +  +  DD +T+ LL    TLG+FQ +   MR  L  M+PD  EDI A
Sbjct: 295  KMVRANKGVDLKMLDLSLDDPKTFELLCRGDTLGVFQFDGGPMRSLLRMMKPDHFEDISA 354

Query: 646  LVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLK----ETQGVIIYQEQVMQIA 699
            + +LYRPGP+     + Y  RKNG+++I  IHP ++  LK     T G+I+YQEQV + A
Sbjct: 355  VSALYRPGPMGMNSHINYALRKNGQQEITPIHPELEEPLKEVLGITYGLIVYQEQVQKAA 414

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q+L+GYSL +AD+LRRAMGKK +E +DK+   F  G  + G S      ++++L  FA Y
Sbjct: 415  QVLAGYSLGQADLLRRAMGKKKQEVLDKEFVPFQKGCRERGYSDEAIQAVWDVLVPFAGY 474

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
             FNK+H++AY +++Y TA++K +YP E++AA +T   D+ +K   +  + R+  I+++ P
Sbjct: 475  AFNKAHSSAYGLVTYWTAYLKANYPAEYMAALLTSVRDDKDKSAVYLNECRRMGIKVLTP 534

Query: 820  SVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKL 877
            +VN    +F   GD+ I + L A++ VG      I+        + S  D+  +V++   
Sbjct: 535  NVNESEANFTAQGDDVILFGLTAVRNVGQNVVEAIIRGRKSKGKYSSFPDYLDKVEAVVC 594

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF--------AH 929
            N+R  ESL+ AGA D  G++R  L    + +      V++       ++F          
Sbjct: 595  NKRTTESLIKAGAFDEMGHTRKGLTAHYETMIDNVVAVKRKEAEGQFDLFGGMGGEGGDG 654

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-- 987
            E   F   I        + +     E+ +LG Y S HPL   + +L         +    
Sbjct: 655  EAPGFGLDIEFSDI-EWDKAYLLAQEREMLGLYVSDHPLFGIEHVLNDKADAAISQLTGG 713

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 714  EHADGAIVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 759


>gi|226357239|ref|YP_002786979.1| DNA polymerase III subunit alpha [Deinococcus deserti VCD115]
 gi|226319229|gb|ACO47225.1| putative DNA-directed DNA polymerase (DNA polymerase III, alpha
            subunit) [Deinococcus deserti VCD115]
          Length = 1341

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 316/792 (39%), Positives = 460/792 (58%), Gaps = 27/792 (3%)

Query: 262  SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
               +   +A E   +         +     LP +  ++C   ++E  +        G + 
Sbjct: 408  EWEARGKQAGEKYTKYPALEVMETEAEGGTLPAYAHEDCRKARQESSDTSIALDPDGNDE 467

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
               +   A   HA    +R ++EL+VI  M F  YFLIVAD+I WAK  +I VGPGRGSG
Sbjct: 468  ---ETTRAHHKHALVILRRAEYELSVINNMGFPDYFLIVADYINWAKDQDISVGPGRGSG 524

Query: 382  AGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
            AGS+ AYA+ IT++DPL F+LLFERFLNPDR+SMPDFDIDF   RR EVI YVQ+KYG +
Sbjct: 525  AGSLVAYAMRITNLDPLEFALLFERFLNPDRISMPDFDIDFNDARRSEVIAYVQDKYGED 584

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFRE 500
            +VAQI TFG++ +KA L+DV R + + Y++VD++ KLIP       SL+   +      +
Sbjct: 585  KVAQIATFGTMASKACLKDVARVMGLEYAKVDKVSKLIPIKFGKSYSLEQAREAVPDIAQ 644

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
                D  +    E +QKLEGL RHAS HAAG+VIG   L+ LVP+ RD   +  V Q++M
Sbjct: 645  MLAEDGQLLEAYEFAQKLEGLTRHASVHAAGVVIGKTQLTDLVPVMRDTSGEGMVCQYDM 704

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLG 619
            K +E  GLIK DFLGL+TL+ L ++   + + RG+++D   IPFDD  TY L++   T G
Sbjct: 705  KAVEDIGLIKMDFLGLRTLSFLDEARRIMRESRGIEIDFDAIPFDDARTYELMSRGDTKG 764

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL-- 677
            +FQLE +G+  A   ++P  + DIIAL +LYRPGP++NI  Y  R +G E++  +     
Sbjct: 765  VFQLEGAGIADASRRLKPRRLADIIALSALYRPGPMENIPTYVRRHHGLEEVDYVRDGFP 824

Query: 678  -----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
                 ++ +L ET G+ +YQEQ+MQIA  ++G+SL  AD+LRRAMGKK  EEM +Q++ F
Sbjct: 825  TSAKYLEKILAETYGIPVYQEQIMQIASEVAGFSLGGADLLRRAMGKKDAEEMKRQRQIF 884

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            + GA  NG+ K  A  +F+LL  FA+YGFNKSH+AAY VI+YQTAW+K +YPVEF+AA +
Sbjct: 885  VEGAGNNGVPKEEANKLFDLLDAFANYGFNKSHSAAYGVITYQTAWLKANYPVEFMAALL 944

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            T+E  + +K+ ++  DAR+ ++ ++PP +N    DF V    I + L AIKG+G    + 
Sbjct: 945  TVERRDSDKVAEYVSDARKMDVHVLPPDINRSAPDFAVEGEEILFGLYAIKGLGEAAVQR 1004

Query: 853  IMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I+E       + SL DFCSR+ +K  NR+ +ESL+ +GA D FG  R QLL SL++  + 
Sbjct: 1005 ILEERQRAGRYKSLADFCSRLGNKVCNRKAMESLIKSGAFDQFGE-RNQLLHSLEDALED 1063

Query: 912  AQWVE---KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
            A           +    +F  E+    ++             R   E+  LG Y SGHPL
Sbjct: 1064 AASTADINAKAASGMSMMFGMEE-VKKERPLRSGIPPFTDLERLSIEKEALGLYISGHPL 1122

Query: 969  DVYKPILRKMGIKGYEES------VATIRGNNIR--LAAMVVSKQQKKTRKGSRIGWVTF 1020
            + ++  LR+       +            G  ++  LA M+    +K T+ G  +     
Sbjct: 1123 EQHEG-LREAASCRISDLDTWFTQQNVAPGKRLKAVLAGMIEGVVKKPTKSGGMMARFIL 1181

Query: 1021 SEPAKEYEANFF 1032
            ++ + + E   F
Sbjct: 1182 ADESGQTELVAF 1193



 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 90/498 (18%), Positives = 166/498 (33%), Gaps = 27/498 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAA---DQQ-PAIAITDTNNLFSALEFSQKACAA 65
            F HL  H+ YSLL+GA  L ++L        +   PA+A+TD  N+  A+ F   A AA
Sbjct: 33  RFAHLHQHTQYSLLDGAAKLKDLLKWAKEVTPEGCTPALAMTDHGNMHGAVHFYNYAQAA 92

Query: 66  GIQPIIGCQLDIDMQDNLKMTN-QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           G++PIIG +  +      +    + +     +  + LL    EGYQ L  L SR Y  + 
Sbjct: 93  GVKPIIGYEAYVVPGQGTRRDRTRAQDGEKGIFHLTLLARDFEGYQNLCRLSSRGYT-EG 151

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                RI    LQE   +G+I  +G     + +       + A+KRLL +++LFG+  Y+
Sbjct: 152 YYYKPRIDHELLQE-HHKGVIAFSGCLGSEVQQLLLQGREEDAKKRLLWYRELFGENYYI 210

Query: 185 NLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +Q H   ++ R + +++  A    + +VATN+  ++ + D  AH+ L+A+     ++ +
Sbjct: 211 EIQDHGLPEQKRNNPILRAWAQELGIGMVATNDGHYVKKSDATAHETLLAIQTKATLADE 270

Query: 244 DRPRVTPDHYLKN---RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
           +R +   D +        +     SD  E   +          +           +    
Sbjct: 271 NRFKFPCDEFYVKNLEEMQAALPVSDWGEEPFDNTSAIADLCNVDLPVGKKRVYQMPALP 330

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAK--------------GYHAQDYRQRLDFELN 346
               +    ELR +   G   R    A                   +A    +R+D    
Sbjct: 331 IPEGRTMAEELRIQTYRGTVKRYPGHATEHLLRDYALRSLEALGADNAARVLKRVDGCDV 390

Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
               ++     L        A+         +                  P        +
Sbjct: 391 RSCDLETLLTLLAFMGSEWEARGKQAGEKYTKY--PALEVMETEAEGGTLPAYAHEDCRK 448

Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
                  +    D D   +                   ++    ++        V   + 
Sbjct: 449 ARQESSDTSIALDPDGNDEETTRAHHKHALVILRRAEYELSVINNMGFPDYFLIVADYIN 508

Query: 467 MPYSQVDRLCKLIPNDPA 484
               Q   +     +   
Sbjct: 509 WAKDQDISVGPGRGSGAG 526


>gi|296876766|ref|ZP_06900814.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            parasanguinis ATCC 15912]
 gi|296432268|gb|EFH18067.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            parasanguinis ATCC 15912]
          Length = 1039

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 287/1023 (28%), Positives = 489/1023 (47%), Gaps = 101/1023 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L   + Y+ +E  +++ + +    +    A+ I D +NL+ A EF +   A  + P++
Sbjct: 9    VQLDTKTVYTFMESLVTIKDYVQVAKSMGYDALGIMDVDNLYGAYEFIEACQAHNLSPLV 68

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ +++ +                 ++ L  +  GYQ L+++ +   +          
Sbjct: 69   GLEVGLEVDNETIP-----------FRMIAL--STRGYQNLMKMSTLKMMGKN------- 108

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                + +  TEG+ ++       +   F      +            G   ++ +     
Sbjct: 109  NWEDV-KHLTEGVAVI-------VPAPFASEDLPL------------GLDYFIGVFADTP 148

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                              P++      F  EED EA  +L A+  +  +  +  P     
Sbjct: 149  V------------QEFSHPVLPLYTVRFFEEEDVEAMQMLAAIKDNQSL-TETGPNDPRT 195

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
                 +          P+A+ N  ++ +   + +     +          + QK    EL
Sbjct: 196  VLKTPQDLKNDFAERFPQAITNLEKLVQGIQYDIDTQLKLPR-------FNSQKPAVEEL 248

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R  A AG         + K      Y++RL+ EL++I +M F  YFLIV D +++ +   
Sbjct: 249  RELAQAG--------LLRKNLTNPVYQERLEHELDIIHQMGFDDYFLIVWDLLRFGRSQG 300

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP+  +LLFERFLN +R +MPD DID     R E I
Sbjct: 301  YYMGMGRGSAVGSLVAYALEITGIDPVEKNLLFERFLNVERYTMPDIDIDIPDIYRPEFI 360

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG    AQI+TF +  AK A+RDV +   +P  ++  + K I           A
Sbjct: 361  RYVRDRYGSYHAAQIVTFSTFGAKQAIRDVFKRFGVPEYELTSITKRIGF---RDTLTTA 417

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               +  FR+   +     R  EI++++EG  R  S HAAG+V+ D+ L+  VP+      
Sbjct: 418  YEQNLAFRQVIHSRAEFKRGFEIAKRIEGQPRQTSIHAAGVVMSDQDLTDHVPLKYG--E 475

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYH 610
            D+ VTQ++   +E  GL+K DFLGL+ LT +QK  +    +   ++ +  I  +D  T  
Sbjct: 476  DMFVTQYDAHAVEANGLLKMDFLGLRNLTFVQKMKEAVYEKYQEEIVIEAIDLEDPATLA 535

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E +G  + L  ++P+  E+++A  SL RPG  D I  +  RK+G+EK
Sbjct: 536  LFAAGDTKGIFQFEQAGAIRLLRRVRPNHFEEVVATTSLNRPGASDYIDNFVKRKHGQEK 595

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P I+ +L+ T G+++YQEQVMQ+AQ  +G++L +AD+LRRAMGKK   EM K ++
Sbjct: 596  VDILDPAIEEILRPTYGIMLYQEQVMQVAQRFAGFTLGKADILRRAMGKKNATEMHKMED 655

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F++GA K G ++  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F   
Sbjct: 656  DFVTGALKLGHTEEKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQMAYFKVHYPDVFFDV 715

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA QF+ ++ P S+NT     K  D +IY  +  IKG+    A
Sbjct: 716  MLN------YSSSDYLTDALQFDFKVAPLSINTIPYRDKFQDRKIYLGMKNIKGLPRDLA 769

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I++   ++PF+S+EDF  R+ ++     +L  LV  G  D F  +R ++L +L N+  
Sbjct: 770  YWIID---NRPFESVEDFILRLPNQYHKLPLLTPLVELGLFDNFEKNRRKVLHNLPNLFV 826

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            +A  +         ++FA    ++++          + + ++E E+ ++G   S HPL  
Sbjct: 827  FADEL--------GSLFADSNYSWTEA------EDYSQAEKYEKEEAIIGIGLSTHPLVA 872

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                     I+   + +    G   R+   V S +  +T+ G  + ++  S+  K+ +  
Sbjct: 873  IGQT-SPYEIQPISQLIQ---GEQARILIEVQSIRTIRTKSGDLMAFLQVSDTKKKLDVT 928

Query: 1031 FFP 1033
             FP
Sbjct: 929  LFP 931


>gi|258652927|ref|YP_003202083.1| DNA polymerase III subunit alpha [Nakamurella multipartita DSM 44233]
 gi|258556152|gb|ACV79094.1| DNA polymerase III, alpha subunit [Nakamurella multipartita DSM
            44233]
          Length = 1422

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 289/1122 (25%), Positives = 477/1122 (42%), Gaps = 127/1122 (11%)

Query: 5    LEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +      FVHL VH  +S  +G    +++++      QPA+A+TD  ++  A  F Q A 
Sbjct: 1    MTDVRDEFVHLHVHGEHSHQDGISRADDLVEAAVRHGQPALALTDHGSIGGAWRFGQAAA 60

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTP-------------------FPTVPSIVLLVS 104
             AGI+PIIG +  + + D     ++                         T   + +L +
Sbjct: 61   QAGIKPIIGVEAYLAIGDRALRGSRPVPRDLLGADGGGAGADAEVGFKKQTYEHLTVLAA 120

Query: 105  TAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS 164
            T EG+  L  L +            R+  + L    + GLI LTG  SGP+  A   + +
Sbjct: 121  TGEGFGNLSRLTADASR--HVYHRPRMDYTSLAA-HSAGLIGLTGCVSGPVAGALLRDGT 177

Query: 165  -----------QVAEKRLLTFKKLFG-DRLYVNLQRHRG-YDRYRESQVVQLAYTHELPL 211
                         A++ ++T + +FG DRL+V +  H    +R    Q+  LA    L  
Sbjct: 178  RQPDGTVFDGRAAAKQAIITLRDIFGRDRLFVEVMDHGIAAERRVTEQLFDLARRAGLKT 237

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHST---------VVSQKDRPRVTPDHYLKNRSEMVS 262
            + TN+S + + +D   HD+ + +  +T          ++  +R R T   Y    +  + 
Sbjct: 238  LFTNDSHYTNADDAPLHDLWLCIGETTRQGAGKPPFKITDTNRWRFTGTGYHLRSTAEMY 297

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD--DIQKEEENELRNKAVAGLE 320
              +   +     +      + +++       R      D           LR+    G  
Sbjct: 298  ALAGGDDRAVRALRNTLLVADMIEDRVLPESRIRLPRYDRLGAFTCAAELLRSLVDDGAG 357

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
             R             D   R+D EL VI ++ F  YFLIV + +  A+      GPGRGS
Sbjct: 358  ERW---GADWRAARPDVANRIDHELAVINQLGFVDYFLIVREALYAARGAGYRTGPGRGS 414

Query: 381  GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
             AGS  +YAL I D+DPL   LLFERFL+P R  MPD D D  +  +  V RY+  ++G 
Sbjct: 415  AAGSAVSYALRIVDVDPLANGLLFERFLDPTRAEMPDIDSDLDRAGQQWVFRYLSERWGA 474

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD----- 495
            +RVA+I   G  +A+A++RD  RA+   ++ +    +L    P    +L  + D      
Sbjct: 475  DRVARIGAPGYTRARASIRDAARAIVPGHAAIQVGNQLAAKVPPTAPTLAGLIDPTNPDG 534

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD--- 552
               R A   DP    +L+ +  +EGL + A  HA G+V+   PL  LVP+ +    D   
Sbjct: 535  EALRAAVPTDPDHQAVLDSAVGIEGLVKQAGVHACGVVVSSEPLPPLVPLRQVTADDGQP 594

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI------PFDDH 606
            + VT +++  +   GL+K DFLGL+TL ++  ++  +                       
Sbjct: 595  IWVTDWDVHDLADLGLVKIDFLGLRTLDVIDAAVAQIRASTGTDIDPEHLADEPGDPRAE 654

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNR 664
              + +L    T G+FQLES+ M    E  +P  I+D+ A+++L+RPGPI      ++  R
Sbjct: 655  AVWTMLGAGRTSGVFQLESASMAGLCERARPRSIDDLSAILALWRPGPISAGFPDLFAAR 714

Query: 665  KNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            + G + +              +  +L  TQG+I+YQEQ+MQI  L++G+  +    LR+A
Sbjct: 715  QTGADTVDYSIFTTDPAEERALRTVLDTTQGLIVYQEQIMQIGALVAGFGPTLTSKLRKA 774

Query: 717  MGKKIKEEMDKQKERFI---------SGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            + KK    M +  ERF+          GA+K   +++ A  ++  +     Y FNKSH+ 
Sbjct: 775  VSKKDAAAMTEIGERFLVGAARDVTDDGAAKQPFARSTARALWAGIKGAGAYSFNKSHSR 834

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            AYA +++QTAW+K  Y  +F AA +    D+ +K      D R   + ++ PSVN     
Sbjct: 835  AYAELTWQTAWLKASYLPQFAAALLAC-TDSADKRAAALMDLRSEQVTVLGPSVNHGADV 893

Query: 828  FKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV---------DSKKL 877
                 +  +   L+ I GVG+  A  + E +    +  L +   RV         D++ L
Sbjct: 894  TSCDRHGVVRLGLSEIAGVGSAGAAIVRERTHGGDYTDLHNLYRRVRVPDAAGSGDTRPL 953

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            +   L +LV +GALD FG  RM L   + ++                           D 
Sbjct: 954  SASTLLALVESGALDQFGP-RMGLAALIGSV------------------------KSPDP 988

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE------SVATIR 991
            + +       +  R   E+RVLG   S +PL   K  +       ++        V    
Sbjct: 989  VPVPDM-EWPTLERSIRERRVLGTALSSNPLRAAKETVHAWRTPDFQRRPTPVHKVPAAD 1047

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            G +I    ++ S   + +    R G V       +     +P
Sbjct: 1048 GADILTLGVLASIDVRISAGRERAGIV-IEGSRSQLAGIIWP 1088


>gi|260907414|ref|ZP_05915736.1| DNA polymerase III, alpha chain [Brevibacterium linens BL2]
          Length = 1122

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 278/1091 (25%), Positives = 451/1091 (41%), Gaps = 96/1091 (8%)

Query: 9    PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            PSF HL V S+++   G      ++         A AITD + +F A+   +   AAGI 
Sbjct: 2    PSFTHLHVASAFTAHHGTAHPETLVAAAVVAGADAAAITDHDGIFGAIRHVRACLAAGID 61

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA---EGYQRLIELVSRMY----- 120
            PI+G  L            Q +     + ++ +L        G+  L+ L+S  +     
Sbjct: 62   PIVGANL------------QTRDDNGQLSTVTVLAHGHNHGAGWAGLVRLISAAHSPRRR 109

Query: 121  ---LLDQGKQSVRICLSWLQEIGTE--GLIML-TGGSSGPIDRAFFFNSSQVAEKRLLTF 174
               L     +S  I         +   G +     G    + RA        A   L  +
Sbjct: 110  QHTLHGTAHRSAWITPDQAPAFLSGETGPVATVLLGPGSDVGRAVLNGDRPRARALLEAW 169

Query: 175  KKLFGDRLYVNLQRHR-----GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            ++     + V +  H           + + ++QLA    +P+V TN   FL  +D    D
Sbjct: 170  ERRLPGGIAVEIVCHHTRPGTAASLQQAADMLQLARVQGVPVVLTNVVRFLRPDDAITGD 229

Query: 230  V---------LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            V         L A    +  +      V  D   +          D  + L +T  +A  
Sbjct: 230  VLDSAAFLLPLGAFEPHSAQAWLKPASVMHDLAYRICDYAGLRRDDAIDLLAHTERVADW 289

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
            C    +            E + I     + +R            +   A G   +  R R
Sbjct: 290  CRLGPET-DLRWRHPKVPELEAIGLAGADPVRVLRQRCEAAITDRYPHAYGTGLRRVRDR 348

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            L  EL  I    F  YFL VAD +   +   + V   RGSGAGS+  + L I+ +DP+  
Sbjct: 349  LSDELATIGGFGFESYFLTVADVVDLIRDMGVRV-QARGSGAGSLVNHLLRISAVDPIEH 407

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
            SLL ERFL   R ++PD DID    RR ++ R V ++YGH RV  +    + +A+ A+RD
Sbjct: 408  SLLSERFLGNARSTLPDIDIDVESARRHDIYRAVFDRYGHHRVTLLSMQSTYRARGAVRD 467

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL---EISQK 517
             G AL +  +Q+DR+ K I          QA+      R+      +  +L    +++ +
Sbjct: 468  AGAALGLDLAQIDRIAKNIWRFNPADF-RQALETKPELRDVAAQVKTDAQLDLLVDLTAR 526

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            L+ L RH S H  G+++GD  L  L          LP++QF+   I+ AGL+K D LG++
Sbjct: 527  LDRLPRHISMHPCGVILGDSDLLSLTATQ-PSGMGLPMSQFDKDDIDDAGLLKLDILGVR 585

Query: 578  TLTLLQKSLDFLAQ--------------------RGVKVDLSLIPFDDHETYHLLTTKGT 617
              + +  +L  +A+                       +VDL  IP DD  T+ L+ +  T
Sbjct: 586  MQSSIAHTLTEIARVNGATAAVEGRLPVDAPYVAADGRVDLEQIPHDDEPTFELIRSTHT 645

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIH 675
            LG FQ+ES G R+ L  MQPD  ED++A +SL+RPGPI   +   + N K G   I+ +H
Sbjct: 646  LGCFQIESPGQRELLGKMQPDQYEDLVADISLFRPGPIQANMVAPFINAKLGYAPIIYLH 705

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            P   P L ET GV+IY EQ+M++       SL+EAD +RRA+         + + R    
Sbjct: 706  PRFRPFLAETYGVLIYHEQLMRVLADCMDISLAEADEIRRALATDSAAIEARFRARTAGR 765

Query: 736  ASKNG---ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
              + G           I+  +A F  +GF K+H A++A+ +YQ+AW+K HYPVEFL   +
Sbjct: 766  VDERGRRLFRDREIDRIWTNVAAFGSFGFCKAHGASFALPTYQSAWLKQHYPVEFLTGIL 825

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----NRIYYSLAAIKGVGT 847
              +       +    +AR+  I ++P  +N     ++V         I +S   I G+  
Sbjct: 826  EHDPGM-YPRRLLVAEARRLGITLLPIDINASSDQYRVEQVSPGIKAIRFSFRDISGITD 884

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG------YSRMQL 901
                 I++    +P+ S+ D   R      +R ++  L   GA D           R  +
Sbjct: 885  VELTRILD---GQPYTSITDLYERARP---SRPLMMRLARIGAFDSLTRDEHGQAHRGGI 938

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            +  +  +                 +F  E    +           ++  R   +  VL  
Sbjct: 939  IAYVRQLTARTHKKAVMPQPNQVPLFGDEVLVDA------AVPDPSAEERIATDLEVLST 992

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
               GH +D+Y+P+L  +G+    E +    G  + +A + V+ Q    R G R  +++  
Sbjct: 993  EVDGHVMDLYRPMLEGLGLTHASELLGLRSGTEVLVAGVRVATQTPPMRSGRRTVFISLD 1052

Query: 1022 EPAKEYEANFF 1032
            +     +  FF
Sbjct: 1053 DGTGCIDVTFF 1063


>gi|257458194|ref|ZP_05623348.1| DNA polymerase III subunit alpha [Treponema vincentii ATCC 35580]
 gi|257444488|gb|EEV19577.1| DNA polymerase III subunit alpha [Treponema vincentii ATCC 35580]
          Length = 744

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 246/622 (39%), Positives = 358/622 (57%), Gaps = 6/622 (0%)

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPDFD+DFC +RR EVI YV+ KYG E V QIITFG+L+ KAA++DVGR L++P  +V+ 
Sbjct: 1    MPDFDVDFCFERRQEVIDYVRRKYGDESVGQIITFGTLKPKAAIKDVGRVLEIPLGEVNA 60

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            + K++P+DP         AD     E R   P    L  I++KLE L R+ S HAAGIVI
Sbjct: 61   ITKMMPSDPKLTFEKA-FADVPELAEMRSD-PRYTELFSIAEKLEDLNRNTSLHAAGIVI 118

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-- 592
            G   L+  VP+Y+D ++    +QF M  IE  GL+K DFLGLKTLTL++ + D + +R  
Sbjct: 119  GKTKLTDYVPLYKDSKTGKTASQFTMDLIEDCGLVKMDFLGLKTLTLIKHTEDLIKKRGG 178

Query: 593  -GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                  +  I   D  T+ +L    +  +FQ ES GM+  L+  +PD IED+IAL +LYR
Sbjct: 179  EYANFSIEQIDEQDAATFKMLGEGKSAAVFQFESQGMQNILKRAKPDKIEDLIALNALYR 238

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            PGP+  I  +   K    KI    P ++ +L ET GVI+YQEQVMQ+AQ + GYSL +AD
Sbjct: 239  PGPMAYIDQFIESKFDSSKIQYPDPCLEDILSETYGVIVYQEQVMQVAQRIGGYSLGQAD 298

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            +LRRAMGKK KE M+K+K RFI GA KN   +  A  IFE+L  FA YGFNKSHAAAY+V
Sbjct: 299  LLRRAMGKKKKEVMEKEKTRFIEGAVKNNFREKDADRIFEILIPFAGYGFNKSHAAAYSV 358

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            ++YQTA++K ++P EF+AA++T E+ + +K+ ++  +A +  + +  P +NT    F V 
Sbjct: 359  LAYQTAYLKANFPAEFMAANLTNEITSTDKLPEYISEANKMGLALHAPDINTSEEYFSVY 418

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            +  I + L  IKGVG   AR I+    A  P+ S  DF  R+D   +N++ LE L+  G 
Sbjct: 419  EGDIVFGLLGIKGVGEQAARDIVAERTAHGPYKSFIDFLDRLDLHTVNKKNLEVLIKTGC 478

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D  G +R +LL +L+    ++   +        ++F           T ++ +      
Sbjct: 479  FDKLGQNRSELLDNLEAAMAFSAQKKAGSAVGQTSLFEDTGIKEFSDFTFKQVNDLPQKE 538

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            +   E+ ++GFY SGHPLD YK  + +             +     +  M+   +  +T+
Sbjct: 539  KLRIEKELMGFYISGHPLDEYKKAIDRSATLELINFRRAQKEKLYTIVGMITGIRPYQTK 598

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
             G  +G+ TF +     +  FF
Sbjct: 599  NGKWMGFGTFEDRTGTIDLTFF 620


>gi|116670865|ref|YP_831798.1| DNA polymerase III subunit alpha [Arthrobacter sp. FB24]
 gi|116610974|gb|ABK03698.1| DNA polymerase III, alpha subunit [Arthrobacter sp. FB24]
          Length = 1166

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 254/1119 (22%), Positives = 467/1119 (41%), Gaps = 132/1119 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDK----------IAADQQPAIAITDTNNLFSALEFS 59
            SF HL V +++S   G    + +                        TD + L+  ++  
Sbjct: 2    SFTHLHVSTAFSAHYGVSWPDELAQAAAADGAKALAC----------TDRDGLYGTVKHL 51

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS---TAEGYQRLIELV 116
            +   +AG+ P++G  L +   D       G         +V+L        GY+ L  L+
Sbjct: 52   KACMSAGLDPVVGVDLAVFDDD-------GDLRTQLAGRVVVLAHGHNDGAGYRALCRLI 104

Query: 117  SRMYLLDQGKQS----VRICLSWLQ--EIGTE----GLIMLTGGSSGPIDRAFFFNSSQV 166
            S  +    GK      V +  + +    +  E     L +L G     + RA        
Sbjct: 105  SDAHARTSGKAGGVVPVAVTRAEIASRALHPETLEPVLTVLVG-PDSDVGRAMGGRRYLR 163

Query: 167  AEKRLLTFKK-LFGDRLYVNLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFL 220
                   +   +    +   +  H              ++++LA  H +P V TN   + 
Sbjct: 164  PRTLFKQWLDGMPKGTVAAEVVSHLSAPGEALSTAHAVRMLKLAAEHGVPAVLTNAVRYC 223

Query: 221  SEEDYEAHDVLMAVAHSTVVSQ---KDRPRVTPDHYLKNRSEMVSIFSDLPEALEN---- 273
            +E+     DVL +      + +   +   +     +LK  ++M+ +  ++  A       
Sbjct: 224  AEDGAATADVLDSARTLKSLPELTAEPLLQPNGRGWLKTSAQMLELGQEIIHAAGYGATD 283

Query: 274  ------TVEIARRCSFILQVHAPILPRFIEKECD--DIQKEEENELRNKAVAGLEVRLAQ 325
                    E       +  V      R +  E     I  +   EL  +  AG+  R   
Sbjct: 284  LTRLLGQTEALADRCRMDPVTDMGWKRPVVPEASVIGIAGDPLVELTLRCEAGIGRRFPG 343

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                 G    + R RL+ EL +IA + F+ YFL VA+  +      +     RGSGA S+
Sbjct: 344  ---ISGKPEAEMRARLEHELRIIANLGFASYFLTVAEVSRMILDMGVRAA-ARGSGASSL 399

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
              Y + ++ ++PL+  L+FERFL+ DR ++PD DID     R  V R + +++G ERV  
Sbjct: 400  VNYLIDVSQVNPLQHDLIFERFLSRDRATLPDIDIDVESAERHNVYRRIFDRFGAERVTL 459

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
            +      +A+ A+RD G AL M    +  + K +    A     +A+ +    +E     
Sbjct: 460  MSMQNGYRARGAVRDAGMALGMDDGDIGEIAKQLWRFSARNF-REALVEKPELKEFAGRV 518

Query: 506  PSVDR--------LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
               D         L++++++L+ L RH S H  G+++GD  L    P+       LP++Q
Sbjct: 519  EQRDFAENQQLDLLVDLTERLDRLPRHISMHPCGVILGDATLLDRTPVQ-PSGLGLPMSQ 577

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV----------------------- 594
            F+   ++  G++K D LG++  + +  ++  + +                          
Sbjct: 578  FDKHDMDPMGMLKLDVLGVRMQSAMAFAVREVIRLHPTKAEVVAAGAHRPGPDGTGPDYI 637

Query: 595  ----KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                ++DL+ +P DD  TY L+ +  TLG FQ+ES G R+ +  M P    D+I  +SL+
Sbjct: 638  AADGRIDLNAVPLDDEPTYELIRSTHTLGCFQIESPGQRELIGKMAPREFNDLIIDISLF 697

Query: 651  RPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGP+ + +   +   ++G    V  HP + P+L+ET GV ++ EQ+++   +++   L+
Sbjct: 698  RPGPMKSDMVRPFLEHRHGFAPEVYPHPDLKPVLQETHGVTVFHEQILKTFDVMTKCGLA 757

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             AD  RRA+G ++ E   ++  R    A   G +  +   ++  L  F  +GF K+H AA
Sbjct: 758  RADEFRRALGNELLEPKVEEFFR--KEARARGYTPEVVDKVWGTLKAFGSFGFCKAHGAA 815

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            +AV +YQ+AW+K H+P  FLA     +     K +    +AR+  I I+P  +N    ++
Sbjct: 816  FAVPTYQSAWLKAHHPEAFLAGLWEHDPGMYPK-RLLVAEARRLGIPILPLDINRSHAEY 874

Query: 829  KVG---------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            +V             I  SL  I G+     + I+   A +P+DSL D  +R    +L++
Sbjct: 875  RVERVGSGPDRGKLGIRLSLNGIYGLSGAELKRIV---AGQPYDSLADLRAR---SRLSK 928

Query: 880  RVLESLVFAGALDCFG------YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
              ++ L   GA D          +R  L+Q L  +Q        +      ++   +   
Sbjct: 929  PSIKRLAQLGAFDTLHRESGGAANRADLVQHLQALQNRPSKKGVDVIEGQLSLPLGDVEL 988

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
             + K  L      +       E  ++    S H +  ++P+L K+G+   ++ +    G 
Sbjct: 989  RNLKAELP---APSMIDNVRAELDLMAVDVSEHLMTSHRPLLDKLGVTTADKLLGLRNGT 1045

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             + +A + ++ Q    R G R+ +++  +     ++ FF
Sbjct: 1046 EVLVAGVRIATQTPPMRGGRRVVFISIDDGTGCVDSVFF 1084


>gi|302552433|ref|ZP_07304775.1| LOW QUALITY PROTEIN: DNA polymerase III subunit alpha [Streptomyces
            viridochromogenes DSM 40736]
 gi|302470051|gb|EFL33144.1| LOW QUALITY PROTEIN: DNA polymerase III subunit alpha [Streptomyces
            viridochromogenes DSM 40736]
          Length = 914

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 246/736 (33%), Positives = 385/736 (52%), Gaps = 41/736 (5%)

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +R + E+ VI  M FS YFL+VAD  ++A+ N IP+GPGRGS  GS+ AYA  IT++ PL
Sbjct: 56   ERFETEMAVIGPMGFSSYFLVVADICRYARDNGIPLGPGRGSATGSLVAYATRITELCPL 115

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               LLFERFLNP+R++ PD D+DF   +RD ++RYV +KYG E  A + TFG ++AK A+
Sbjct: 116  EHGLLFERFLNPERINPPDVDLDFDDRQRDRMVRYVIDKYGDEYTALVNTFGKIKAKNAI 175

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAH---------PVSLQAIADDSRFREARLADPSVD 509
            +D  R L  PY+  +R+ K +P D              S     +    R+   ++P V 
Sbjct: 176  KDSARILGYPYAHGERITKALPPDQNGKSAPLDALFDASHARYPEAGEIRQMYGSEPDVA 235

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            R+++ ++ +EGL R    HAA +++    L+  +P++        +T F+    E  GL+
Sbjct: 236  RVIDTARGVEGLTRGTGVHAAAVILSKTRLTDRIPLHLRASDGARITGFDYPSCEAMGLV 295

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRG------------------VKVDLSLIPFDDHETYHL 611
            K DFLGL+ L ++ ++++ + +                          +IP DD  TY L
Sbjct: 296  KMDFLGLRNLGVIDQAIENVRENRGVRLATVDPGDGAGGDPGGDPGTVVIPLDDARTYRL 355

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKE 669
            L    TLG+FQL+  GMR  L+ M P   EDI A  +LYRPGP+  +    Y  R+NGK+
Sbjct: 356  LAEANTLGVFQLDGGGMRALLKLMAPTRFEDIAAANALYRPGPMAANAHTNYALRQNGKQ 415

Query: 670  KIVSIHPLID----PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
                IHP +     P+L  T  +++YQEQ+M +A+ L+GY+L  AD+LRRAMGKK  E +
Sbjct: 416  AATPIHPELREALEPILGPTHHLLVYQEQIMAVARQLAGYTLGGADMLRRAMGKKKPEVL 475

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
              + E+F  G + NG S      +++++  F+ Y FNKSH A Y ++SY TA++K +YP 
Sbjct: 476  AAEWEKFHGGMTANGYSDEAVRALWDVMLPFSGYAFNKSHTAGYGLVSYWTAYLKANYPA 535

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            E++AA +T   D+ +K   +  DAR   ++++PP +N    +F    + + + L +++ V
Sbjct: 536  EYMAALLTSVGDDKDKAALYLADARANGVRVLPPDINESVAEFTAVGDDVRFGLRSVRNV 595

Query: 846  GTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            G      ++        F S  DF  +     LN+R +ESL+ AGA D  G+SR  L   
Sbjct: 596  GDGVIEAVIDARRRGGRFTSFSDFLHKAGLPALNKRAVESLIKAGAFDSLGHSRKGLTAV 655

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT------LEKFSVENSSVRFENEQRV 958
             +        V+K  +   +++FA   G  +D                        E+ +
Sbjct: 656  HEAAVDAVIPVKKAASFGQDDLFAGLGGAEADAAPAFGLDFAVAEEEWPRRQLLATEREM 715

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVAT-IRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            LG Y S HPLD  + IL         E +A+      +RL+ ++   Q+K T++G+    
Sbjct: 716  LGLYVSAHPLDGAERILAAARDCSVAELLASGRTSGEVRLSGLITGVQRKVTKQGNAWAV 775

Query: 1018 VTFSEPAKEYEANFFP 1033
            V  ++     E  FFP
Sbjct: 776  VQLTDRDAGIEVLFFP 791


>gi|167901170|ref|ZP_02488375.1| error-prone DNA polymerase [Burkholderia pseudomallei NCTC 13177]
          Length = 843

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 238/841 (28%), Positives = 374/841 (44%), Gaps = 41/841 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129 VRICLSWLQEIGT--EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            R+    L         L  +    +  +        + V + +L  F  LFG+R  + L
Sbjct: 124 YRLTPRMLAAPPRALAHLRGVPDCFAILVPTY--PARADVLDAQLAWFDALFGERARLGL 181

Query: 187 -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            Q  R  D     QV        + +VA  +            D + A+        +  
Sbjct: 182 VQLQRALDGAHREQVRAAGERRGMHIVALGDVTMHIRSCKPLQDTMTAIRLGMP-IAECG 240

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + P+     R+          +AL  T  +   C F L       P  I         
Sbjct: 241 HALAPNGEQHLRTRQRIAQLFPADALAQTCRMLDACHFSLDDLRYEYPHEIVPAG----H 296

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + L  +  AG   R   G           RQR++FEL +IA +K+  YFL V D ++
Sbjct: 297 TPTSYLAQETWAGARRRYPDGV------PDTVRQRIEFELALIADLKYEPYFLTVYDIVK 350

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+  +I    GRGS A SV  Y L +T+++P + +LLFERFL+ +R   PD D+DF   
Sbjct: 351 YARSKDIL-CQGRGSAANSVVCYCLGVTEVNPQQSTLLFERFLSRERGEPPDIDVDFEHQ 409

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EVI+Y+  KYGH+R A      + + + ALR+ G+AL +    V+R+ K        
Sbjct: 410 RREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRETGKALGVDPMLVERVAKEHRWFDGS 469

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              L   A            P +    EI+ +L    RH S H+ G V+    L++LVP+
Sbjct: 470 RDLLARFASV----GLDPEVPLIRTWAEIAARLLNFPRHLSQHSGGFVVSRGKLTRLVPV 525

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-------VKVDL 598
                    V Q++   +E  GL+K D L L  L+ L ++ D +               L
Sbjct: 526 ENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDMITAWRGPPLPDGRPFRL 585

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             IP DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI   
Sbjct: 586 EHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPRLRPRGYYDLVVQVSIVRPGPIQGG 645

Query: 659 VVYNNRKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            V+   +  +        +I      ++ +L+ T G+ I+QEQVMQIA + +G++  EAD
Sbjct: 646 AVHPYLERRRIAAGEAHGEITYPSEALERVLERTLGIPIFQEQVMQIAIVAAGFTPGEAD 705

Query: 712 VLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            LRRAM     K ++ K  ER ++G  + G S+  A  IFE +  F +YGF +SHAA++A
Sbjct: 706 ALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFAEQIFEQIKGFGEYGFPESHAASFA 765

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            ++Y ++W+K H P  FLAA +  +        +  QDA++  + ++P        +  +
Sbjct: 766 KLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVTVLPIDATKSGWEASL 825

Query: 831 G 831
            
Sbjct: 826 E 826


>gi|317496209|ref|ZP_07954569.1| DNA polymerase III [Gemella moribillum M424]
 gi|316913784|gb|EFV35270.1| DNA polymerase III [Gemella moribillum M424]
          Length = 1092

 Score =  436 bits (1121), Expect = e-119,   Method: Composition-based stats.
 Identities = 311/1033 (30%), Positives = 513/1033 (49%), Gaps = 78/1033 (7%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            LQVHS+Y LL   +    + +K+ +D Q ++ I D  N++ A++  ++A   GI  I G 
Sbjct: 6    LQVHSAYDLLNSTIKYKELFEKLKSDNQDSVVIVDP-NMYGAIKAYKEAKKTGINLISGL 64

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++ +    +    N             +L      + +L EL +R   L++ + S+   L
Sbjct: 65   EVKLGYGISFLTFN-------------ILCKNERMFHKLFELSTR--FLNEEELSLEAFL 109

Query: 134  SWLQEIGTEG-LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
            + +++   +  LI+ +                           +L G   Y       G+
Sbjct: 110  AEIKDFKDDFVLIVTSELRDSIEFSYLQE--------------QLIGYDFYF------GF 149

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS--------TVVSQKD 244
            +      +    YT+   +V T  S +L+++ Y+   V  A+  +        T      
Sbjct: 150  NEKFNYSI----YTYYDNIVYTKPSYYLNKDHYQQVVVARAIRDNTKLNIRELTTTIGDH 205

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI- 303
              R   D  L   S+       L ++L+N   I  +C + L+     LP++I  E +D+ 
Sbjct: 206  FVRSVQDFSLLLESDNEEYIFMLQKSLDNQQRIIDKCHYELEFSGYHLPKYIYGEHEDVF 265

Query: 304  -QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             +   ++ LR     G + +L       G     Y++R ++EL +I  M F+ YFLIV D
Sbjct: 266  AKMSAKDYLRYLVQKGAKEKL------VGKDYYAYKKRYEYELKIIDDMGFNDYFLIVYD 319

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            F+++AK N I VG GRGS AGS+  Y L IT+ DPL ++LLFERFLN +R+SMPD DIDF
Sbjct: 320  FVKYAKDNGILVGAGRGSAAGSLVCYLLNITEADPLEYNLLFERFLNKERISMPDIDIDF 379

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RRDEVI+YV+ KYG ++VAQIITF + Q+K+A R+  R LQ     +  +   + + 
Sbjct: 380  QDTRRDEVIKYVEGKYGEDKVAQIITFTTFQSKSAARETARILQFNEEDLKFISSNVSST 439

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR-PLSQ 541
                   +        R          R   I+  LE L ++ S HAAGIVI D  PL +
Sbjct: 440  R---TLTECYEVSENLRNFVNKSDLNRRWFSIALSLEELPKNPSVHAAGIVISDDKPLIK 496

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
              P+         +TQ+ M  +E  GL+K DFLG++ LT++   ++ + +     D++ I
Sbjct: 497  HTPLA-ASNVTKYLTQWTMDDVESVGLLKIDFLGIRYLTMVSNIVEQIKKDNPSFDITKI 555

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
             + D + Y+L T   T GIFQ ESSGM++ L  ++P    DI+A+ +LYRPGP+  I  Y
Sbjct: 556  NYADQKVYNLFTQGRTEGIFQFESSGMKEKLRLLRPTEFNDIVAMNALYRPGPMAQIETY 615

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              RK+G+EK+V  HP ++ +L++T GVI+YQEQ+M IA   +  SL+EAD +RRA+ KK 
Sbjct: 616  VRRKHGEEKVVYPHPHLEKILRDTYGVIVYQEQIMLIAVNFAHMSLNEADNMRRAVSKKK 675

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            KE+++     FI  +   G    IA  +F+L+  FA+YGFNKSHA  Y++++Y+ A++K 
Sbjct: 676  KEDLEYYGRIFIEKSVAAGYDLNIAKKLFDLIVTFANYGFNKSHAVVYSMLAYRLAYLKV 735

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +Y   F+ A +   + + +KI ++ Q+     I +  P VN    DF V    I ++L A
Sbjct: 736  YYTKYFMTALLNNVISSEKKINEYKQELNNLGITLAKPDVNVSLSDFSVYKQDIVFALTA 795

Query: 842  IKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            IK VG  ++  I++   +   +  ++DF  R++ KK++ +  +SLV AGALD FGY+R  
Sbjct: 796  IKNVGYRSSYEIVQDRLNFGKYQDIDDFLKRMN-KKVDYQAAQSLVKAGALDTFGYNRAT 854

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            L++ + +  +  +    N                   + +E+      + + + E+ V G
Sbjct: 855  LMKKVKDYYEDDRKYINNVRV-------ALSAESGLTLKVEEVEDYPIAEKIQMEKEVTG 907

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             YF  HP+ V K    K            +  + + +      K +K       + ++T 
Sbjct: 908  TYFLKHPVQVEKE---KYAYLPLRYIGRDVSDSYVEVITKKEIKTKKG----EYMAFLTV 960

Query: 1021 SEPAKEYEANFFP 1033
            ++   +Y+   FP
Sbjct: 961  NDGKNDYDVTVFP 973


>gi|307704719|ref|ZP_07641617.1| DNA polymerase III subunit alpha [Streptococcus mitis SK597]
 gi|307621725|gb|EFO00764.1| DNA polymerase III subunit alpha [Streptococcus mitis SK597]
          Length = 1033

 Score =  436 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 287/1022 (28%), Positives = 476/1022 (46%), Gaps = 101/1022 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + YS +E  +S++  +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3    AQLDTKTVYSFMESVISIDKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIYPLL 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ + +                   +  L  ++ GYQ+L++L +     ++       
Sbjct: 63   GLEMTVFVDAQEVN-------------LRFLALSSVGYQQLMKLSTAKMQGEK------- 102

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   +  I +       I+                      G   Y+ +     
Sbjct: 103  SWSVLSQYLED--IAVIVPYFEEIESLNL------------------GYDYYIGVYPETL 142

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
               +    +         PL   N   F S +      +     +  +     R R    
Sbjct: 143  TSEFHHPIL---------PLYRVN--AFESRDREVLQVLTAIKENLPLREVPLRSRQDVL 191

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
                +  ++       P+ALEN  ++    S+ L     +          +  +    EL
Sbjct: 192  ISASSLEKL--FQERFPQALENLEKLISGISYDLDTSLKLPR-------FNPARPAVEEL 242

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R +A  GL          KG  +++Y+ RLD EL VI  M F  YFL+V D +++ + N 
Sbjct: 243  RERAELGLAQ--------KGLSSKEYQDRLDQELAVIHDMGFDDYFLVVWDLLRFGRSNG 294

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 295  YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 354

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 355  RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 411

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412  YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKHG--D 469

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYH 610
            ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+   + + +  I  +D ET  
Sbjct: 470  EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAKIEDIHLKIEEIDLEDKETLA 529

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530  LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 589

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK    M + + 
Sbjct: 590  VTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKDASAMHEMRA 649

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F   
Sbjct: 650  SFIQGSLEAGHTAEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQV 709

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            +  DA +   ++ P S+NT     K+ +  IY  L +IKGV    A
Sbjct: 710  MLNSANS------DYLTDALEAGFEVAPLSINTIPYHDKIANKSIYLGLKSIKGVSKDLA 763

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ +
Sbjct: 764  LWIIE---NRPYSNIEDFIAKLPDNYLKLPLLEPLVKVGLFDLFEKNRQKVFNNLVNLFE 820

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            + + +         ++F      + +              +F  EQ +LG   S HPL  
Sbjct: 821  FVKEL--------GSLFGDTIYNWQES------EDWTDQEKFYMEQELLGIGVSKHPLQA 866

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
                +    I            +   +   V   +  +T+KG  + ++   +  K+ +  
Sbjct: 867  ----IASKAIYPITPIGKLSENSYAIILVEVQKIKVIRTKKGENMAFLQVDDSKKKLDVT 922

Query: 1031 FF 1032
             F
Sbjct: 923  LF 924


>gi|111657741|ref|ZP_01408464.1| hypothetical protein SpneT_02001071 [Streptococcus pneumoniae TIGR4]
          Length = 1020

 Score =  436 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 288/1011 (28%), Positives = 481/1011 (47%), Gaps = 101/1011 (9%)

Query: 23   LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82
            +E  +S+   +          +A+ D +NL+ A +F +     GI P++G ++ + + D 
Sbjct: 1    MESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLLGLEMTVFVDD- 59

Query: 83   LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142
                           ++  L  ++ GYQ+L++L +     ++         S L +   E
Sbjct: 60   ------------QGVNLRFLALSSVGYQQLMKLSTAKMQGEK-------TWSVLSQYL-E 99

Query: 143  GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQ 202
             + ++            +F+  +  E          G   Y+ +                
Sbjct: 100  DIAVIVP----------YFDRVESLE---------LGCDYYIGVYPE------------T 128

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
            LA     P++           D E   VL A+  + +  ++   R   D ++   S    
Sbjct: 129  LASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQDVFISASSLEKL 187

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
                 P+AL+N  ++    S+ L     +          +  +    ELR +A  G    
Sbjct: 188  FQERFPQALDNLEKLISGISYDLDTSLKLPR-------FNPARPAVEELRERAELG---- 236

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                 + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N   +G GRGS  
Sbjct: 237  ----LVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGQSNGYYMGMGRGSAV 292

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
            GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + IRYV NKYG + 
Sbjct: 293  GSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFIRYVGNKYGSKH 352

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
             AQI+TF +  AK ALRDV +   +P  ++  + K I           A   + +FR+  
Sbjct: 353  AAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSAYEGNLQFRQQI 409

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
             +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      ++P+TQ++   
Sbjct: 410  NSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--DEIPLTQYDAHG 467

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIF 621
            +E +GL+K DFLGL+ LT +QK  + LA+       +  I  +D ET  L  +  T GIF
Sbjct: 468  VEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETLALFASGNTKGIF 527

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            Q E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E++  + P+++ +
Sbjct: 528  QFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEEVTVLDPVLEDI 587

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            L  T G+++YQEQVMQ+AQ L+G+SL +AD+LRRAMGKK    M + +  FI G+ + G 
Sbjct: 588  LAPTYGIMLYQEQVMQVAQRLAGFSLGKADILRRAMGKKDASAMHEMRASFIQGSLEAGH 647

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
            +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ KTHYP  F    +         
Sbjct: 648  TVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQVMLNSSNS---- 703

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
               +  DA +   ++   S+NT     K+ +  IY  L +IKGV    A  I+E   ++P
Sbjct: 704  --DYLIDALEAGFEVASLSINTIPYHDKIANKAIYLGLKSIKGVSNDLALWIIE---NRP 758

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
            + ++EDF +++    L   +LE LV  G  D F  +R ++  +L N+ ++ + +      
Sbjct: 759  YSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFEFVKEL------ 812

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
               ++F     ++ +              +F  EQ +LG   S HPL      +    I 
Sbjct: 813  --GSLFGDAIYSWQES------EDWTEQEKFYMEQELLGIGVSKHPLQA----IASKAIY 860

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                       +   +   V   +  +T+KG  + ++   +  K+ +   F
Sbjct: 861  PITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVTLF 911


>gi|320333087|ref|YP_004169798.1| DNA polymerase III subunit alpha [Deinococcus maricopensis DSM 21211]
 gi|319754376|gb|ADV66133.1| DNA polymerase III, alpha subunit [Deinococcus maricopensis DSM
            21211]
          Length = 1332

 Score =  436 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 310/728 (42%), Positives = 439/728 (60%), Gaps = 22/728 (3%)

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
             + A A   HA    +R ++EL+VI  M F  YFLIVAD+I WAK + I VGPGRGSGAG
Sbjct: 459  HESACAHHRHALVLLRRAEYELSVINNMGFPDYFLIVADYINWAKDHGISVGPGRGSGAG 518

Query: 384  SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
            S+ AYA+ IT++DPL F LLFERFLNPDR+SMPDFDIDF   RR EVI YVQ KYG ++V
Sbjct: 519  SLVAYAIRITNLDPLEFELLFERFLNPDRISMPDFDIDFNDARRGEVITYVQQKYGDDKV 578

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD-SRFREAR 502
            AQI TFG++ +KA L+DV R + + Y++VD++ KLIP       SL+   +     ++  
Sbjct: 579  AQIATFGTMASKACLKDVARVMGLEYAKVDKVSKLIPIKFGKSYSLEQARESVPDIQQML 638

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
              D  +    E +QKLEGL RHAS HAAG+VIG   L+ LVP+ RD   +  V Q++MK 
Sbjct: 639  DEDAQLREAYEFAQKLEGLTRHASVHAAGVVIGKTQLTDLVPVMRDTSGEGMVCQYDMKA 698

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            +E  GLIK DFLGL+TL+ L ++   + + +G++VD   IPFDD  T+ LL+   T G+F
Sbjct: 699  VEDIGLIKMDFLGLRTLSFLDEAKRIMRESKGIEVDFDAIPFDDEATFDLLSRGDTKGVF 758

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP----- 676
            QLE +G+  A   ++P  + DIIAL +LYRPGP++NI  Y  R +G E++  +       
Sbjct: 759  QLEGAGIADASRRLKPRRLADIIALSALYRPGPMENIPTYVRRHHGLEQVDYVRDGFPNS 818

Query: 677  --LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
               ++ +L ET G+ +YQEQ+MQIA  ++G+SL  AD+LRRAMGKK  EEM +Q++ F+ 
Sbjct: 819  AQWLEKILAETYGIPVYQEQIMQIASEVAGFSLGGADLLRRAMGKKDAEEMKRQRQIFVD 878

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            GA  NG+ K     +F+LL  FA+YGFNKSH+AAY VI+YQTAW+K ++PVEF+AA +T+
Sbjct: 879  GAEGNGVPKDEGNKLFDLLDAFANYGFNKSHSAAYGVITYQTAWLKANHPVEFMAALLTV 938

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
            E  + +K+ ++  DAR+  + ++PP +N    DFKV    IY+ L AIKG+G      I+
Sbjct: 939  ERRDSDKVAEYASDARKMGVTVLPPDINRSGADFKVVGQDIYFGLYAIKGLGENAVLRIL 998

Query: 855  EASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
            +       F SL DFC+R+D+K  NR+ LESL+ +GA D FG  R QLL SL++   +AQ
Sbjct: 999  DERERGGRFRSLADFCARIDNKTCNRKGLESLIKSGAFDAFGE-RQQLLSSLEDAIAWAQ 1057

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
                   +  + +F   +     K+        +   +   E+  LG Y SGHPL+ ++ 
Sbjct: 1058 GAAAMLNSGMDALFGMAETAPEPKLRA-NVEPLSELAKLALEKEALGLYISGHPLEQHEG 1116

Query: 974  ILRKMGIKGYEESVAT---------IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             LR+       +                    LA M+    +K T+ G  +     ++  
Sbjct: 1117 -LREAASTRIADLDDWFFTQPQTGGRNRVKAVLAGMIEGVVKKPTKSGGMMARFNLADET 1175

Query: 1025 KEYEANFF 1032
               E   F
Sbjct: 1176 ATIELVAF 1183



 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 76/331 (22%), Positives = 137/331 (41%), Gaps = 11/331 (3%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAA---DQQ-PAIAITDTNNLFSALEFSQKAC 63
              F HL  H+ YSLL+GA  L ++L        D   PA+A+TD  N+  A+ F   A 
Sbjct: 21  PKRFAHLHQHTQYSLLDGAAKLKDLLKWAKEVTPDGCTPALAMTDHGNMHGAVHFYNYAT 80

Query: 64  AAGIQPIIGCQLDIDMQDNLKMTN-QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
             G++PIIG +  +      +    +G+     +  + LL    EGYQ L  L SR Y  
Sbjct: 81  GMGVKPIIGYEAYVVPGVGTRRERTRGQDGEKGIFHLTLLARDFEGYQNLCRLSSRGYT- 139

Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
           +      RI    LQE   +G+I  +G     + +         A++RL+ ++ LFG+  
Sbjct: 140 EGYYYKPRIDHELLQE-HHKGVIAFSGCLGSEVQQLLLQGREADAKQRLMWYRDLFGENY 198

Query: 183 YVNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
           ++ +Q H   ++ R + +++  A    + +VATN+  ++ + D  AH+ L+A+     ++
Sbjct: 199 FIEIQDHGLPEQKRNNPILRAWAQELGIGMVATNDGHYVKKSDATAHETLLAIQTKATLA 258

Query: 242 QKDRPRVTPDHYLKN---RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            ++R +   D +        +     S+  E   +   +      +           +  
Sbjct: 259 DENRFKFPCDEFYVKNLEEMQAALPVSEWGEEPFDNTAMIADLCNVDLPVGKKRVYQMPA 318

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
                 +    ELR +  AG   R       
Sbjct: 319 LPIPEGRTMAEELRVQTYAGSLKRYPHHVTE 349


>gi|192290399|ref|YP_001991004.1| error-prone DNA polymerase [Rhodopseudomonas palustris TIE-1]
 gi|192284148|gb|ACF00529.1| DNA polymerase III, alpha subunit [Rhodopseudomonas palustris TIE-1]
          Length = 1195

 Score =  436 bits (1120), Expect = e-119,   Method: Composition-based stats.
 Identities = 224/905 (24%), Positives = 376/905 (41%), Gaps = 71/905 (7%)

Query: 170  RLLTFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             L     L  D +++ L  + RG D+ R +++ ++A    +P +ATN+ L+         
Sbjct: 214  ALERLTALNADAVWLGLTPYYRGDDKRRLARLRRIAAAARVPCIATNDVLYHHPRRRALQ 273

Query: 229  DVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            DVL  V   T + +  R      + +LK  +EM  +F   PEA+  T+  A R SF L  
Sbjct: 274  DVLTCVREKTSIDKAGRRLEGNAERHLKPAAEMARLFRADPEAIAETLRFANRISFTLDE 333

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                 P           K  +  L +    G+      G       +   +  +  EL +
Sbjct: 334  LKYHYPDEPVPPG----KTAQQHLEDLTREGIAAYFPNG------ISDKLQATIAKELAI 383

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I R  ++ YFL V D +++A+  +I    GRGS A S   Y L IT +DP    LLFERF
Sbjct: 384  IERRGYAHYFLTVHDIVRYARSQDIL-CQGRGSAANSAVCYVLGITCVDPTEIDLLFERF 442

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            ++ +R   PD D+DF   RR+EV++Y+  +YG  R A + T    + ++A+RDVG+AL +
Sbjct: 443  VSEERDEPPDIDVDFEHSRREEVMQYIYRRYGRHRAAIVATVIHYRPRSAIRDVGKALGL 502

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
                   L   +       ++        R       +P + R +E++ +L G  RH S 
Sbjct: 503  SEDVTAALADTVWGSWGKGLN----EMQVRQAGLDPHNPMIGRAVELATELIGFPRHLSQ 558

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            H  G V+    L   VP+      D    +++   I+   ++K D L L  LT ++K   
Sbjct: 559  HVGGYVLTQDRLDSYVPIGNAAMEDRTFIEWDKDDIDAVKMMKVDVLALGMLTCIRKGFH 618

Query: 588  FLAQRGVKVDL--SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             +AQ          +   DD+  Y +L    ++G+FQ+ES      L  ++P C  D++ 
Sbjct: 619  LIAQHKGVRFQLSDIKSEDDNAVYKMLQRGESIGVFQVESRAQMNMLPRLKPRCFYDLVI 678

Query: 646  LVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQV 695
             V++ RPGPI   +V+    R+NG+E +V   P         +  +L +T GV ++QEQ 
Sbjct: 679  EVAIVRPGPIQGDMVHPYLRRRNGQEPVVYPSPSGEAGDKNELQQILGKTLGVPLFQEQA 738

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLA 754
            M+IA   + ++  EA+ LRRAM        + K + + I    K G   T A N FE + 
Sbjct: 739  MRIAIEAAHFTPDEANQLRRAMATFRNVGTIGKFEAKMIGNLVKRGYDATFAKNCFEQIK 798

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F  YGF +SHAA++A + Y +AWMK  +P  F  A +  +        +   DAR   +
Sbjct: 799  GFGSYGFPESHAASFAKLVYVSAWMKCEHPDAFCCALLNSQPMGFYAPAQIVGDARSNGV 858

Query: 815  QIMPPSVNTPCVDFKVGD-----NRIYYSLAAIKGVG------------------TTTAR 851
            ++ P  V+       + +     + +      I G                       A 
Sbjct: 859  EVRPVDVSFSEGQCTLEERCGRHHAVRLGFRMIDGFRWADPDEERVQLEAGEPPSDDWAA 918

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
             I+ A A   F SLE F        +++R L  L  A A    G  R   L ++  +   
Sbjct: 919  RIVTARARGAFSSLEQFAR---ITAMSKRALILLADADAFRSLGLDRRAALWAVRRLPDD 975

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
                          +F                     +     + + +     GHP++  
Sbjct: 976  V----------PLPLFEAASAREQQDEHAAPLPAMPMAEHVVADYQTVRLSLKGHPMEFL 1025

Query: 972  KPILRKMGIKGYEESVATIR---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            + +     +    E   + +   G  +R A +V+ +Q+  +  G  + ++T  +      
Sbjct: 1026 RALFAAERVVTCRELSRSEQRASGRWLRCAGVVLVRQRPGSANG--VIFMTIEDETGIAN 1083

Query: 1029 ANFFP 1033
               +P
Sbjct: 1084 IVVWP 1088



 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 20/139 (14%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           S  +  + V +++S LEG     + + + +     AI I D N L   +    +     +
Sbjct: 2   SARYAEIGVTTNFSFLEGGSHPQDYVHEASRLGLDAIGIADRNTLAGVVRAFSEFDNEEL 61

Query: 68  ----QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
               + +IG +L                     P ++   +    Y RL  L+S   L  
Sbjct: 62  IHKPKLLIGTRLCFADG---------------TPDLLAYPTDRAAYGRLCRLLSAGKLR- 105

Query: 124 QGKQSVRICLSWLQEIGTE 142
            GK    +  + L+    E
Sbjct: 106 AGKGECHLTFADLEAFIHE 124


>gi|257893645|ref|ZP_05673298.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,408]
 gi|293560684|ref|ZP_06677168.1| DNA polymerase III subunit alpha [Enterococcus faecium E1162]
 gi|257830024|gb|EEV56631.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,408]
 gi|291605358|gb|EFF34808.1| DNA polymerase III subunit alpha [Enterococcus faecium E1162]
          Length = 1027

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 288/941 (30%), Positives = 466/941 (49%), Gaps = 44/941 (4%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
            ++       GYQ+L++L SR  + +            L E+     +     ++  +  A
Sbjct: 1    MLAYAKDEIGYQQLMKLSSRKMIQE---------KLELAEMTETDHLAFVVPANHSVSEA 51

Query: 159  FFFNSSQVAEKRLLTFKK-LFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNS 217
            F  N             + +F    Y+ L  +         +  Q        L A +  
Sbjct: 52   F--NKEDNFFGHWQFLLENVFTRNFYIGLTENTPDQ---LPEWYQYVIKENYSLCALHPI 106

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA-LENTVE 276
              L +E+  A +V+  +   + +  ++     P            +     +A L   V 
Sbjct: 107  ASLQQEELFALEVMKHIKEGSQIPLENLSASLPLTANVYLLSEQEMIKRFEKAGLSQAVI 166

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
             A+R +  +        + +        K+    LR    + +E R+         + ++
Sbjct: 167  GAQRLAESISFEFQFHQKLLPHYPVPNGKQAGEYLRELCYSQVERRITD-------YTKE 219

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
            Y++RLD+EL+VI +M F  YFLIV D + +A +N I  G GRGS AGS+ AY L ITD+D
Sbjct: 220  YQERLDYELSVIHQMGFDDYFLIVWDVMAFAHRNKIVTGAGRGSAAGSLVAYVLEITDVD 279

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            PL + LLFERFLNP+R +MPD D+D   +RR+EV+ YV+ KYG   +AQI TFG++ AK 
Sbjct: 280  PLEYDLLFERFLNPERFTMPDIDLDIPDNRREEVLNYVREKYGQYHMAQIATFGTMAAKM 339

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
             LRD  R   +  S+ +R  K IPN     ++        +  E   A      L + + 
Sbjct: 340  VLRDAARVFGLSQSEANRWSKAIPNQLKITLTQA-YKTSHQLVELVQASEKNQLLFKTAV 398

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             LEGL RH STHAAG+VI D+ L +LVP+ R          + M  +E  GL+K DFLGL
Sbjct: 399  ILEGLPRHVSTHAAGVVISDKNLLELVPLQRGSDEAFLTQ-YTMNEVEAIGLLKMDFLGL 457

Query: 577  KTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            + L+++  +L  + +  G ++ L  IP +D +T  L     T G+FQ ES+G+R  L  +
Sbjct: 458  RNLSIIDFTLKAVKRVEGYEIRLKEIPLNDAKTLLLFQRGETSGVFQFESAGIRNVLRRL 517

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
             P+ IEDI A+ +LYRPGP+ NI  +  RK GKE I      + P+LK T GVI+YQEQ+
Sbjct: 518  DPENIEDIAAVNALYRPGPMQNIDTFIARKKGKEAIRYPDDSLIPILKNTYGVIVYQEQI 577

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            MQIA  ++G++L ++D+LRRA+ KK K+ +D++K  F+SGA + G S+  A  ++E + K
Sbjct: 578  MQIASTMAGFTLGQSDILRRAVSKKKKDVLDEEKSHFVSGALQQGYSEKTAATVYEYIEK 637

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA+YGFN+SHA AY+ + +Q A++K H+P  F  + M     N  K+K++  +AR+  ++
Sbjct: 638  FANYGFNRSHAFAYSFVGFQMAYLKAHHPGAFFTSLMNSVRHNTSKLKEYIAEARKNKLK 697

Query: 816  IMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            +  PS+N     F+ V    I + L AIKG+       I+     + PF S++ F  R+D
Sbjct: 698  LSSPSINQSNSSFELVNKEEIRFGLTAIKGIRRDFVEDILNERKQNGPFQSVDQFLIRID 757

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             + L   +L+SL   G  D    +R QL+  L+   +   +     +    ++       
Sbjct: 758  KRWLKLELLQSLTAVGVFDELSPNRKQLMLDLEGKIQNIVY-----SGGSLDLLGIM--- 809

Query: 934  FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-ATIRG 992
                +  E+ +      R + E+  LG Y SGHP         ++ +    + +   +  
Sbjct: 810  ---ALKEEEVADYTLEERLKLEEEYLGIYLSGHP----AEGFDRLRLAKQVQLITDIVPN 862

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + L  M+   ++ +T+KG  + +V  ++ + E     FP
Sbjct: 863  QPVNLLVMIKEVREIRTKKGELMAFVEGTDSSGEISVTVFP 903


>gi|332107597|gb|EGJ08821.1| DNA polymerase III subunit alpha [Rubrivivax benzoatilyticus JA2]
          Length = 1057

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 246/871 (28%), Positives = 394/871 (45%), Gaps = 49/871 (5%)

Query: 5   LEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
           +  + P +  L   S++S L GA     ++ +       A+AITD  +L   +    +A 
Sbjct: 1   MPTALPPYAELHCRSNFSFLVGASHPEELVARAHVLGYAALAITDEGSLAGVVRAHAEAE 60

Query: 64  AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             G++ I+G ++ +            +TP    P +VLL  T  GY  L   ++      
Sbjct: 61  RLGLKLIVGAEMRLAP--------PPETPDADEPRLVLLAQTRRGYGNLAHWITVARRRA 112

Query: 124 QGKQSVRICLSWLQEI--GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-D 180
             K       S L+        L  L G  +  +  A      +         K  FG +
Sbjct: 113 A-KGEYLAWRSDLEGAVPTAPFLAGLPGCIALLLPDA--AQPLETVFAHASWLKTWFGPE 169

Query: 181 RLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           R  V L+  H   D      V ++A    LP+VA    L  +       DVL A      
Sbjct: 170 RAAVALELLHHAGDADLVDTVTRVAAQAGLPVVAAGGVLMHTRSRKPLLDVLAATRLKRP 229

Query: 240 V-SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
           V           + +L+ R+ + +++     A   T+ +A RCSF L       PR I  
Sbjct: 230 VAECGFDLEPNAEAHLRPRARLAALYRPEWLAA--TLAVAERCSFTLAELKYEYPREIVP 287

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                     + LR    +G   R   G  A        R +++ EL +IAR+ +  YFL
Sbjct: 288 AG----HTPTSWLRELTESGARRRFPAGVPA------AVRAQIEHELALIARLGYEPYFL 337

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            VAD + WA+  +I    GRGS A S   Y L +T +DP + +LLFERF++ +R   PD 
Sbjct: 338 TVADIVHWARDQDIL-CQGRGSAANSAVCYCLEVTAVDPSKSTLLFERFISEERNEPPDI 396

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           DIDF   RR+EVI+YV  +YG  R A      S + ++ALRDVGRAL +   +++ + + 
Sbjct: 397 DIDFEHQRREEVIQYVYQRYGRHRAALTAVVISYRPRSALRDVGRALGLDLDRIESVARG 456

Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                   +  + + +    +    A P     +E++++L G  RH S H  G VI    
Sbjct: 457 QQWFDGRRIDPERLRE----QGLDPAAPLCRLWVELTEQLIGFPRHLSQHPGGFVIARDE 512

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVD 597
           LSQLVP+      D  V Q++   ++  GL+K D L L  L+ ++++LDF+ A+RG  + 
Sbjct: 513 LSQLVPVENAAMEDRSVVQWDKDDLDALGLMKVDLLALGMLSAIRRALDFVGAKRGAPLA 572

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           L  IP D+   Y +L+   ++G+FQ+ES      L  ++P+   D++  V++ RPGPI  
Sbjct: 573 LHQIPQDEKPVYDMLSAGDSIGVFQVESRAQMSMLPRLRPEKFYDLVIEVAIVRPGPIQG 632

Query: 658 IVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            +V+    R+ G+E +      +   L+ T GV I+QEQVMQ+A L + ++  EAD LRR
Sbjct: 633 GMVHPYLKRRCGEEPVDYPSAEVKQALERTLGVPIFQEQVMQLAILAADFTPGEADRLRR 692

Query: 716 AMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           AM     K  +    ER +      G +   A  IF+ +  F +YGF +SHAA++A + Y
Sbjct: 693 AMAAWKRKGGLGPFHERLVGRMVAKGYTAEFAERIFKQIEGFGEYGFPESHAASFAQLVY 752

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN- 833
            +AW+K H+P  FLAA +           +  +DAR+  + + P  V     +  + D  
Sbjct: 753 ASAWLKRHHPDAFLAALLNSLPMGFYAPAQLVRDAREHGVVVRPVDVFRSDWETTLEDEA 812

Query: 834 ----------RIYYSLAAIKGVGTTTARHIM 854
                      +    + + G     A  ++
Sbjct: 813 AAPGAPPGLRAVRLGFSRVTGFPQDAAGRLV 843


>gi|110801675|ref|YP_697669.1| DNA polymerase III, alpha subunit, interruption-C [Clostridium
            perfringens SM101]
 gi|110682176|gb|ABG85546.1| DNA polymerase III, alpha subunit, interruption-C [Clostridium
            perfringens SM101]
          Length = 783

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 243/664 (36%), Positives = 374/664 (56%), Gaps = 40/664 (6%)

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPD D DFC + R  VI YV  KYGH+ V+QIITFG++ A+A +RDVGRA+ 
Sbjct: 2    FLNPERVSMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMN 61

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
              Y++VDR+ K IP      +    +  +   +     +  V  L+++S++LEGL RH+S
Sbjct: 62   YTYAEVDRIAKQIPTVLGVTIDKA-LDLNPELKTIYDTEERVKELIDVSRRLEGLPRHSS 120

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            THAAG+VI  +PL + VP+ ++   +  VTQF+M  +E+ GL+K DFLGL+TLT+++ ++
Sbjct: 121  THAAGVVIASQPLVEYVPLQKN--DESIVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAV 178

Query: 587  DFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            D +   RGV +DL  + FDD E Y ++    T+G+FQLES+GM   ++ ++PDC+EDIIA
Sbjct: 179  DMIKYNRGVDIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIA 238

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
             +SLYRPGP+  I  Y + K   + +  I P ++ +L  T GV++YQEQVM+I + L+GY
Sbjct: 239  GISLYRPGPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGY 298

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISG------------ASKNGISKTIAVNIFELL 753
            S+  +D++RRAM KK  + M+++++ FI G              +NGIS   A  IF+ +
Sbjct: 299  SMGRSDLVRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSM 358

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNKSHAAAYAVI +QTA++  +YPVEFLAA +   M N +K+ ++ + A +  
Sbjct: 359  MDFASYAFNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLG 418

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV 872
            IQ++PP +N     F V  + I + + AIK VG     +I ++      F SL DFC+++
Sbjct: 419  IQVLPPDINESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGKFTSLMDFCNKI 478

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--E 930
            D   +N+R +ESL+ AG  D     R QLL   + I        K   +   ++F    E
Sbjct: 479  DLSIVNKRSVESLIKAGTFDSLNVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFGALQE 538

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-- 988
            +   + +I        N       E+ + G Y SGHPLD Y+  L++      E+ +   
Sbjct: 539  ESESNLEIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKEQTSITIEKIIEAQ 598

Query: 989  -------------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                                  G  + +  ++ +  +K TR  + + +    +     E 
Sbjct: 599  KNLNEQKNVELEDLVLDSSLTDGTRVIIGGILTNVSRKVTRNNTLMAFAKVEDLTGYLEC 658

Query: 1030 NFFP 1033
              FP
Sbjct: 659  VIFP 662


>gi|262183812|ref|ZP_06043233.1| error-prone DNA polymerase [Corynebacterium aurimucosum ATCC 700975]
          Length = 953

 Score =  433 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 253/988 (25%), Positives = 405/988 (40%), Gaps = 98/988 (9%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F++ A   G+  + G +L +D                    + +L  T EGY+RL  L
Sbjct: 1    MKFAEAAAKVGLPAVFGAELSLDPAP-----------------LTVLARTPEGYRRLSRL 43

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +SR ++    K    +    L EIG +             D   F    +  E   L   
Sbjct: 44   ISRAHMEAGEKG--VVSYPSLAEIGAQ-----------LQDECLFLVGWEWVEHFDLLVD 90

Query: 176  KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
             +  D + +     +  +      ++       LP+     +   +    E   +  A  
Sbjct: 91   GIKIDSMVLEYACTQLPEDADHHLLMD-----SLPVPRAIATARPAAAAREHARLAGAKQ 145

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
              +                 +        + L       +    R           L   
Sbjct: 146  ALSRRLALADASPNSHPMGSSWLRSGEQMARLLPERPELIAETVRVLEECSFTWEALAPN 205

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +          E + L +          A+ A       +   +++ +EL V+ ++ F G
Sbjct: 206  LPDFDVPEGHTEMSWLEHLTFE---RAAARYATRPKEIRERAWEQMRYELGVVKQLGFPG 262

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV D + + K+ NI    GRGS A S   +AL IT+ +P+   LLFERFL+PDR   
Sbjct: 263  YFLIVCDLVDFCKRENIL-CQGRGSAANSAVCFALGITNAEPISAGLLFERFLSPDRDGP 321

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD DID    RR+EVI+YV  K+G ER AQ+    + + K ALRD  RAL  P    D  
Sbjct: 322  PDIDIDIESGRREEVIQYVYAKHGRERAAQVANVITYRRKGALRDAARALGYPQGSADAW 381

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
             K I                          P+   +  ++ +  G  RH   H+ G+V+ 
Sbjct: 382  SKGIA-------------------------PAPSDVESLADQFLGQPRHLGIHSGGMVLC 416

Query: 536  DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
            DRP++ +VP+      +  V Q++      AGL+KFD LGL  L  L   +D + +  G 
Sbjct: 417  DRPIADVVPVEWARMENRSVLQWDKDDCAAAGLVKFDLLGLGMLEALHHMMDLVEESTGR 476

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             V+L  +   D E Y +L     +G+FQ+ES      L  ++P    D++  V+L RPGP
Sbjct: 477  MVNLWELDLADSEVYDMLCRADAVGVFQVESRAQLSTLPRLKPRVFFDLVVEVALIRPGP 536

Query: 655  ID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            I   ++  Y  R++GKE +   HP+++  L +T G+ ++QEQ+MQIA   +G+S +EAD 
Sbjct: 537  IQGGSVHPYLRRRDGKEPVTYDHPVLEKSLGKTLGIPLFQEQLMQIAVDAAGFSGAEADD 596

Query: 713  LRRAMGKKIKEEMDKQKERFISGASK--NGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
            LRRAMG K         ++      +  NGI   +A  ++  +  FA YGF +SH+ ++A
Sbjct: 597  LRRAMGSKRSPAKMAALKQRFYEGLEETNGIVGEVADKLWAKIVAFAAYGFPESHSQSFA 656

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
             + Y +AW K +YP +F    +  +       +   QDAR+  ++++P SVN    + +V
Sbjct: 657  SLVYFSAWFKRYYPAQFCVGLLRAQPMGFYSPQSLIQDARRHGVEVLPVSVNESGREARV 716

Query: 831  -----GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                 G  RI   L  IKG+G   A  I  A    PF  + D   R D   L    +E+L
Sbjct: 717  VVGADGQTRIRLGLNLIKGLGDKAADRIEAA---APFAGVPDLSRRAD---LTVDHVEAL 770

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              AGALD FG  R Q L         A      R      + A         I       
Sbjct: 771  AVAGALDVFGVDRRQALWQ-------AGVAATERAGMLPGLSA---------IEAPFLPG 814

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             ++      +    G   +  P++  +  L+  GI    +      G  +R+A +V  +Q
Sbjct: 815  MSAFELMAADVASTGVTHNQQPMEQVRGELQSRGILAAADLPGVEDGTRVRIAGVVTHRQ 874

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +T  G  + +    +          P
Sbjct: 875  RPQTAGG--VVFFGLEDETGLMNVMVSP 900


>gi|119961680|ref|YP_948048.1| DNA polymerase III, alpha subunit [Arthrobacter aurescens TC1]
 gi|119948539|gb|ABM07450.1| putative DNA polymerase III, alpha subunit [Arthrobacter aurescens
            TC1]
          Length = 1172

 Score =  433 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 251/1125 (22%), Positives = 461/1125 (40%), Gaps = 139/1125 (12%)

Query: 10   SFVHLQVHSSYSLLEGALSLNNILDK----------IAADQQPAIAITDTNNLFSALEFS 59
            SF HL V +++S   G    + +                        TD + L+  ++  
Sbjct: 2    SFTHLHVSTAFSAHYGVSWPDELAQTAAANGATALAC----------TDRDGLYGTIKHL 51

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS---TAEGYQRLIELV 116
            +    A I PI+G  L +   D    T  G         +V+L        GY+ L  L+
Sbjct: 52   KACMDASIDPIVGVDLAVFDDDGDHRTQVGG-------RVVVLAHGNNNGAGYRALCRLI 104

Query: 117  SRMYLLDQGKQS----VRICLSWLQ------EIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
            S  +    GK        +    L       +     L +L G     +  A        
Sbjct: 105  SDAHARTSGKAGGAVPAAVTRGELASRTLDPKTLKPVLTVLIG-PDSDVGLAMGGRKYLR 163

Query: 167  AEKRLLTFKKLFG-DRLYVNLQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFL 220
                   +        +   +  H              ++++LA  + +P + +N   + 
Sbjct: 164  PRTLFKQWIDAMPPGTMVAEVVSHLSAPGEPLSTAHAVRMLKLALEYNIPAILSNAVRYC 223

Query: 221  SEEDYEAHDVLMAVAHST---------VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            +++     DVL +               +      + T   +LK   +M+ +  ++  A 
Sbjct: 224  AQDGAATADVLDSARTLKSLPELSTAPPLQPTGMLQPTGQGWLKTPQQMLQLGKEIMNAA 283

Query: 272  EN----------TVEIARRCSFILQVHAPILPRFIEKECD--DIQKEEENELRNKAVAGL 319
                          E       I  V      + +  E     I  +   EL  +  AG+
Sbjct: 284  GQGKADLTKLLANTEALADKCRINPVLDMGWKKPVVPEASIIGIDADPMLELTQRCEAGI 343

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
              R        G   +  R RL+ EL +I R+ F+ YFL VA+  +      + V   RG
Sbjct: 344  TRRFPG---INGDAEKHLRSRLEHELGIIGRLGFASYFLTVAEVSRMILDMGVRVA-ARG 399

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            SGA S+  Y + I+ +DP+R  L+FERFL+  R ++PD DID     R  V R + +++G
Sbjct: 400  SGASSLVNYLIDISQVDPIRHDLIFERFLSGRRSTLPDIDIDVESAERHNVYRKIFDRFG 459

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             ERV  +      +A+ A+RD G AL MP  +V  + K +    A     +A+ +    R
Sbjct: 460  AERVTLMSMQNGYRARGAVRDAGMALGMPDDEVGEIAKQLWRFSARKF-REALVEKPELR 518

Query: 500  EAR--------LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
            +            +  +D L++++++L+ L RH S H  G+++GD  L    P+      
Sbjct: 519  DFAGRVERGALEENQQLDLLVDLTERLDRLPRHISMHPCGVILGDATLLDRTPVQ-PSGL 577

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV----------------- 594
             LP++QF+   ++  G++K D LG++  + +  ++  + +                    
Sbjct: 578  GLPMSQFDKHDMDPMGMLKLDVLGVRMQSAMAFAVREVIRLHPSKAEVVAAGRHPIEPGG 637

Query: 595  ----------KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
                      ++DL+ +PFDD  TY L+ +  TLG FQ+ES G R+ +  M P    D+I
Sbjct: 638  DGPDYIAPDGRIDLNAVPFDDEPTYELIRSTHTLGCFQIESPGQRELIGKMAPREFNDLI 697

Query: 645  ALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
              +SL+RPGP+ + +   +   ++G    +  H  + P+L+ET GV ++ EQ+++   ++
Sbjct: 698  IDISLFRPGPMKSDMVRPFLEHRHGFAPEIYPHQDLKPVLQETHGVTVFHEQILKTFHVM 757

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +   L  AD  RRA+G +++   +   E++    +    S  +   ++  L  F  +GF 
Sbjct: 758  TDCGLDRADEFRRALGDEVQ---EPGVEKYFRKEAIKKYSPEVVDKVWGTLKAFGSFGFC 814

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            K+H AA+AV +YQ+AW+K H+P  FLA     +     K +    +AR+  I I+P  +N
Sbjct: 815  KAHGAAFAVPTYQSAWLKAHHPEAFLAGLWEHDPGMYPK-RLLVAEARRLGIPILPLDIN 873

Query: 823  TPCVDFKVGD---------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
                +++V             I  SL  I G+     + I+   A +P+DSL D  +R  
Sbjct: 874  RSQAEYRVEKIQQGTNHGKLGIRLSLTGIYGLSGAELKRIV---AGQPYDSLADLRARA- 929

Query: 874  SKKLNRRVLESLVFAGALDCFGY------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
              ++++  ++ L   GA D          +R  L+Q L  +Q        +         
Sbjct: 930  --RVSKPNIKRLAQLGAFDALHKDSGGKANRADLVQHLQALQSNPSKKATDGIEGQ---L 984

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
            A   G    +    +            E  ++    S H ++ ++P+L K+G+   ++ +
Sbjct: 985  AFALGDVELRNLAPELPAPTMVDNVRAELDLMAVDVSEHLMESHRPLLEKLGVTTADKLL 1044

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +   G  + +A + ++ Q    R G R+ +++  +     ++ FF
Sbjct: 1045 SLRNGTEVLVAGVRIATQTPPMRGGRRVVFISIDDGTGCVDSVFF 1089


>gi|15805534|ref|NP_294230.1| DNA polymerase III subunit alpha [Deinococcus radiodurans R1]
 gi|14194695|sp|Q9RX08|DPO3A_DEIRA RecName: Full=DNA polymerase III subunit alpha
 gi|6458195|gb|AAF10085.1|AE001909_7 DNA polymerase III, alpha subunit [Deinococcus radiodurans R1]
          Length = 1335

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 301/718 (41%), Positives = 435/718 (60%), Gaps = 26/718 (3%)

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +R ++EL+VI  M F  YFLIVAD+I WAK ++I VGPGRGSGAGS+ AYA+ IT++DPL
Sbjct: 472  RRAEYELSVINNMGFPDYFLIVADYINWAKDHDISVGPGRGSGAGSLVAYAIRITNLDPL 531

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
             F LLFERFLNPDR+SMPDFDIDF   RR EVI YVQ KYG ++VAQI TFG++ +KA L
Sbjct: 532  EFELLFERFLNPDRISMPDFDIDFNDARRTEVIGYVQEKYGTDKVAQIATFGTMASKACL 591

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQK 517
            +DV R + + Y++VD++ KLIP       SL+   +     ++    D  +    E +QK
Sbjct: 592  KDVARVMGLEYAKVDKVSKLIPIKFGKSYSLEQAREAVPDIQQMLAEDAQLLEAYEFAQK 651

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            LEGL RHAS HAAG+VIG   L+ LVP+ RD   +  V Q++MK +E  GLIK DFLGL+
Sbjct: 652  LEGLTRHASVHAAGVVIGREELTNLVPVMRDTSGEGQVCQYDMKSVEDIGLIKMDFLGLR 711

Query: 578  TLTLLQKSLDFLAQ-----RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            TL+ L ++   L +          D   IPFDD +TY L++   T G+FQLE +G+  A 
Sbjct: 712  TLSFLDEAKRILRESGTDFEEKYGDFDHIPFDDEKTYELMSRGDTKGVFQLEGAGIADAS 771

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP-------LIDPMLKET 685
              ++P  + DIIAL +LYRPGP++NI  Y  R +G E++             ++ +L+ET
Sbjct: 772  RRLKPRRLADIIALSALYRPGPMENIPTYVRRHHGIEEVDYDKDGFPNSKQWLEKILQET 831

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
             G+ +YQEQ+MQIA  ++GYSL  AD+LRRAMGKK  EEM +Q++ F+ GA + G+ +  
Sbjct: 832  YGIPVYQEQIMQIASEVAGYSLGGADLLRRAMGKKDAEEMKRQRQLFVVGAKEKGVPEDE 891

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
               +F++L  FA+YGFNKSH+AAY VI+YQTAW+K +YPV+F+AA +T+E  + +K+ ++
Sbjct: 892  GNKLFDMLDAFANYGFNKSHSAAYGVITYQTAWLKANYPVQFMAALLTVERRDSDKVAEY 951

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDS 864
              DAR+ ++ ++PP +N    DF V    I + L AIKG+G +    I+E       F S
Sbjct: 952  VSDARKMDLHVLPPDINRSSSDFAVAGEEILFGLYAIKGLGESAVLRILEEREKAGAFKS 1011

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK--NRTNK 922
            L DFCSR+ +K  NR+ LESL+ +GA D FG  R QL++SL++  + A    +   R   
Sbjct: 1012 LADFCSRLGNKVCNRKALESLIKSGAFDAFGE-RHQLIESLEDALEDAAGTAEINARAQS 1070

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
              ++    +    ++      +  +   R   E+  LG Y SGHPL+ ++  LR+     
Sbjct: 1071 GMSMMFGMEEVKKERPLRSSIAPYSDLERLAIEKEALGLYISGHPLEQHEG-LREAASCR 1129

Query: 983  YEESVATI--------RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +  A          +     LA M+    +K T+ G  +     ++ + + E   F
Sbjct: 1130 VSDLDAWFALQNVAPGKRQKAVLAGMIEGVVKKPTKSGGMMARFILADESGQMELVAF 1187



 Score =  299 bits (764), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 93/502 (18%), Positives = 168/502 (33%), Gaps = 29/502 (5%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAA---DQQ-PAIAITDTNNLFSALEFSQKA 62
           +   F HL  H+ YSLL+GA  L ++L        + Q PA+A+TD  N+  A+ F   A
Sbjct: 20  QPKKFAHLHQHTQYSLLDGAAKLKDLLKWAKEVTPEGQTPALAMTDHGNMHGAVHFYNYA 79

Query: 63  CAAGIQPIIGCQLDIDMQDNLKMTN-QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
               ++PIIG +  +      +    + +     +  + LL    EGYQ L  L SR Y 
Sbjct: 80  MGMEVKPIIGYEAYVVPGFGTRRDRSRAQDGEKGIFHLTLLARDFEGYQNLCRLSSRGYT 139

Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
            +      RI    LQE   +G+I  +G     + +         A  RLL +++LFGD 
Sbjct: 140 -EGYYYKPRIDHELLQE-HHKGIIAFSGCLGSEVQQLLMQGREDDARARLLWYRELFGDN 197

Query: 182 LYVNLQRHRGYDRYRESQVVQ-LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            ++ +Q H   ++ + + +++  A    + +VATN+  ++ + D  AH+ L+A+     +
Sbjct: 198 YFIEIQDHGLPEQKKNNPILKAWAQELGIGMVATNDGHYVKKSDATAHETLLAIQTKATL 257

Query: 241 SQKDRPRVTPDHYLKNRSEMVSI----FSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
           + ++R +   D +     E +           E  +NT  IA  C+  L V        +
Sbjct: 258 ADENRFKFPCDEFYVKNLEEMQRALPVSEWGEEPFDNTAHIAELCNVELPVGKKRQY-QM 316

Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIA--------------KGYHAQDYRQRLD 342
            +      +    ELR +  AG   R                         A    +R  
Sbjct: 317 PQLPIPEGRSMAEELRVQTYAGAVKRYPAHLTEGLLRDYAARSLAELGEADAARVLKRTG 376

Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
              +    +      L        A+      G                 +   P     
Sbjct: 377 GCDSASCDLDTLYTLLAFLGSEWEARGKE--AGEKYTPYPALEKMEQDGESGTLPAYAHA 434

Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
                   D  +  + D D   +           K       ++    ++        V 
Sbjct: 435 DCRAARRQDSDTSIELDPDTDDEETTRSHHRYALKLLRRAEYELSVINNMGFPDYFLIVA 494

Query: 463 RALQMPYSQVDRLCKLIPNDPA 484
             +         +     +   
Sbjct: 495 DYINWAKDHDISVGPGRGSGAG 516


>gi|146318196|ref|YP_001197908.1| DNA polymerase III DnaE [Streptococcus suis 05ZYH33]
 gi|145689002|gb|ABP89508.1| DNA polymerase III, alpha subunit [Streptococcus suis 05ZYH33]
          Length = 1036

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 286/1025 (27%), Positives = 490/1025 (47%), Gaps = 102/1025 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + Y+ ++  +++ + + +       A+ I D N+L++A  F +     G+QPII
Sbjct: 3    AQLDTKTVYTFMDSMVTIESYVGRAKELGYHALGIMDKNSLYAAYSFMESCNKMGLQPII 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+LD  +Q   +                L+  T  GY+ L+++ +   +  Q       
Sbjct: 63   GCELDWKLQGEEQDITTQ-----------LIALTTRGYRNLLKIST-AKMTGQD------ 104

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                +++   +  I +       I+                      G   Y+ +     
Sbjct: 105  DFETIRQYLVD--IAVVVPYFSGIEHLEL------------------GVNYYIGVT---- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                     VQ      LP+   +   F  EE  E+  VL A+  +  +           
Sbjct: 141  -----VDTPVQDFKQAPLPI---HTVRFFEEEQLESLQVLHAIRDNIPL--------NQV 184

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
              + +R +++S  S          +       ++   +  L   ++    +  +    EL
Sbjct: 185  SDVDSRQKLLSADSLTNLFSNRFPQAVDNLRDLVAGISYQLNTDLKLPRFNRDRPAVEEL 244

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
              ++  GLE +        G     Y++RL+ EL++I +M+F  YFLIV D +++ +   
Sbjct: 245  YERSYQGLEEK--------GLTNSLYKERLEKELSIIHQMEFDDYFLIVWDLLRFGRSQG 296

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R SMPD DID     R + I
Sbjct: 297  YYMGMGRGSAVGSLVAYALNITGIDPVKHNLLFERFLNAERYSMPDIDIDIPDIHRADFI 356

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG    AQI+T+ +  AK A+RDV +    P  ++  + K I    +      A
Sbjct: 357  RYVRDRYGSTHAAQIVTYSTFGAKQAIRDVFKRFGTPEYELSNITKKISFRDSLT---SA 413

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               ++ FR+   +     +   I+Q++EG  R  S HAAGIV+ D  L+  +P+      
Sbjct: 414  YQRNAAFRQIINSKIEYQKAFAIAQQIEGQPRQTSIHAAGIVMSDEELTDTIPLKIG--D 471

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYH 610
            D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + + +R  + +D++ I  +D +T  
Sbjct: 472  DMLVTQYDAHAVEANGLLKMDFLGLRNLTFVQKMAEGVRERYQQEIDIAKIDLEDKKTLE 531

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E  G    L  ++P   EDI+A  SL RPG  D    +  RK+G+E 
Sbjct: 532  LFAAGRTKGIFQFEQPGAISLLRRVKPGRFEDIVATTSLNRPGASDYSDNFVKRKHGQET 591

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM   + 
Sbjct: 592  VDLLDPTIAPILQPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNAQEMQAMEA 651

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ GA KNG ++  A  IF ++AKFA YGFN+SHA AY+ +++Q A+ K+HY   F   
Sbjct: 652  EFLQGALKNGHAEENAREIFGMMAKFAGYGFNRSHAYAYSALAFQMAYFKSHYTDVFFDV 711

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            + +DA QF+ ++   ++N      K   +++Y  L  +KG+    A
Sbjct: 712  MLNHSSS------AYIEDAMQFDFEVARLTINNIPYHDKFDKSKVYLGLKTLKGLPKDLA 765

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I++     P+ S+EDF  R+      + +L  L+  G  D F  +R +++++LDN+  
Sbjct: 766  LWILDHR---PYKSVEDFILRLPDNFKKKDLLIPLIQIGLFDDFDANRKKIIENLDNLFV 822

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL-D 969
            +A+ +           FA E  +++D          + S +F  EQ +LG   S HPL +
Sbjct: 823  FAEAI--------GTFFAEESYSWTD------VEDYSDSEKFMLEQELLGVGISPHPLVN 868

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYE 1028
            + +        + + +      GN   +   + + +  +T+K G ++ ++  ++  +  +
Sbjct: 869  ICRE-----SKRSFTDLADLAVGNRATVLVQIQAIRLIRTKKTGEQMAFLRVTDTKRTLD 923

Query: 1029 ANFFP 1033
               FP
Sbjct: 924  VTLFP 928


>gi|253751378|ref|YP_003024519.1| DNA polymerase III alpha subunit [Streptococcus suis SC84]
 gi|253753279|ref|YP_003026419.1| DNA polymerase III alpha subunit [Streptococcus suis P1/7]
 gi|253755890|ref|YP_003029030.1| DNA polymerase III alpha subunit [Streptococcus suis BM407]
 gi|251815667|emb|CAZ51255.1| DNA polymerase III alpha subunit [Streptococcus suis SC84]
 gi|251818354|emb|CAZ56178.1| DNA polymerase III alpha subunit [Streptococcus suis BM407]
 gi|251819524|emb|CAR45104.1| DNA polymerase III alpha subunit [Streptococcus suis P1/7]
 gi|292557997|gb|ADE30998.1| DNA polymerase III alpha subunit [Streptococcus suis GZ1]
 gi|319757664|gb|ADV69606.1| DNA polymerase III alpha subunit [Streptococcus suis JS14]
          Length = 1036

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 286/1025 (27%), Positives = 490/1025 (47%), Gaps = 102/1025 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + Y+ ++  +++ + + +       A+ I D N+L++A  F +     G+QPII
Sbjct: 3    AQLDTKTVYTFMDSMVTIESYVGRAKELGYHALGIMDKNSLYAAYSFMESCNKMGLQPII 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+LD  +Q   +                L+  T  GY+ L+++ +   +  Q       
Sbjct: 63   GCELDWKLQGEEQDITTQ-----------LIALTTRGYRNLLKIST-AKMTGQD------ 104

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                +++   +  I +       I+                      G   Y+ +     
Sbjct: 105  DFETIRQYLVD--IAVVVPYFSGIEHLEL------------------GVNYYIGVT---- 140

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                     VQ      LP+   +   F  EE  E+  VL A+  +  +           
Sbjct: 141  -----VDTPVQDFKQAPLPI---HTVRFFEEEQLESLQVLHAIRDNIPL--------NQV 184

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
              + +R +++S  S          +       ++   +  L   ++    +  +    EL
Sbjct: 185  SDVDSRQKLLSADSLTNLFSNRFPQAVDNLRDLVAGISYQLNTDLKLPRFNRDRPAVEEL 244

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
              ++  GLE +        G     Y++RL+ EL++I +M+F  YFLIV D +++ +   
Sbjct: 245  YERSYQGLEEK--------GLTNSLYKERLEKELSIIHQMEFDDYFLIVWDLLRFGRSQG 296

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R SMPD DID     R + I
Sbjct: 297  YYMGMGRGSAVGSLVAYALNITGIDPVKHNLLFERFLNAERYSMPDIDIDIPDIHRADFI 356

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG    AQI+T+ +  AK A+RDV +    P  ++  + K I    +      A
Sbjct: 357  RYVRDRYGSTHAAQIVTYSTFGAKQAIRDVFKRFGTPEYELSNITKKISFRDSLT---SA 413

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               ++ FR+   +     +   I+Q++EG  R  S HAAGIV+ D  L+  +P+      
Sbjct: 414  YQRNAAFRQIINSKIEYQKAFAIAQQIEGQPRQTSIHAAGIVMSDEELTDTIPLKIG--D 471

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYH 610
            D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + + +R  + +D++ I  +D +T  
Sbjct: 472  DMLVTQYDAHAVEANGLLKMDFLGLRNLTFVQKMAEGVRERYQQEIDIAKIDLEDKKTLE 531

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E  G    L  ++P   EDI+A  SL RPG  D    +  RK+G+E 
Sbjct: 532  LFAAGRTKGIFQFEQPGAISLLRRVKPGRFEDIVATTSLNRPGASDYSDNFVKRKHGQET 591

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM   + 
Sbjct: 592  VDLLDPTIAPILQPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNAQEMQAMEA 651

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ GA KNG ++  A  IF ++AKFA YGFN+SHA AY+ +++Q A+ K+HY   F   
Sbjct: 652  EFLQGALKNGHAEENAREIFGMMAKFAGYGFNRSHAYAYSALAFQMAYFKSHYTDVFFDV 711

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            + +DA QF+ ++   ++N      K   +++Y  L  +KG+    A
Sbjct: 712  MLNHSSS------AYIEDAMQFDFEVARLTINNIPYHDKFDKSKVYLGLKTLKGLPKDLA 765

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I++     P+ S+EDF  R+      + +L  L+  G  D F  +R +++++LDN+  
Sbjct: 766  LWILDHR---PYKSVEDFILRLPDNFKKKDLLIPLIQIGLFDDFDANRKKIIENLDNLFV 822

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL-D 969
            +A+ +           FA E  +++D          + S +F  EQ +LG   S HPL +
Sbjct: 823  FAEAI--------GTFFAEESYSWTD------VEDYSDSEKFMLEQELLGVGISPHPLVN 868

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYE 1028
            + +        + + +      GN   +   + + +  +T+K G ++ ++  ++  +  +
Sbjct: 869  ICRE-----SKRSFTDLADLAVGNRATVLVQIQAIRLIRTKKTGEQMAFLRVTDTKRTLD 923

Query: 1029 ANFFP 1033
               FP
Sbjct: 924  VTLFP 928


>gi|125623350|ref|YP_001031833.1| DNA polymerase III DnaE [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492158|emb|CAL97087.1| DNA polymerase III alpha subunit [Lactococcus lactis subsp. cremoris
            MG1363]
 gi|300070098|gb|ADJ59498.1| DNA polymerase III DnaE [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 1070

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 281/1043 (26%), Positives = 488/1043 (46%), Gaps = 103/1043 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS L+  + L++ L+         + I D  NL +A  F +KA    +QP+
Sbjct: 2    FAPLNTKTEYSFLDSVVKLDDYLEGALRLGYKTVGICDVGNLHAAFRFVRKAQMLNLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            I  +L+ + +      +              +    EGY+ L+ + +            R
Sbjct: 62   ISIELNFEWRGLPVSFS-------------FIAKNTEGYKNLLRIST-------FHNYDR 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               S +Q   +   I L       I   +   +     +        F D  Y+ +    
Sbjct: 102  RQFSDIQNHLSG--IALV------IPETY--GTLSELSELAA-----FADEAYIGI---- 142

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D+  +           LP +      +L+  D E   +L AV    +   +     + 
Sbjct: 143  --DQQTDK-----GTKFNLPTLPFPAVRYLNFADNEILAILHAVRDG-LSFDESLTVSSN 194

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            +   +  +         P+AL N   +  + ++       +          D ++E    
Sbjct: 195  ELLQRPEAYESYFQKYFPQALTNLSVLTAKIAYQFDEKLELPR-------FDKKREAVEH 247

Query: 311  LRNKAVAGLEVRLAQG----------------AIAKGYHAQDYRQRLDFELNVIARMKFS 354
            LR +A+ GL  RL +                   +       Y++RL+ EL+VI +M F 
Sbjct: 248  LREEAILGLSARLEEKKSLTEISSVSLASALAEESTTIDLSVYQERLEKELSVIHQMGFD 307

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFLIVAD +++A++ +I  G GRGS AGS+ AY L IT +DP++ +L FERFLNP+R++
Sbjct: 308  DYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDPVKHNLFFERFLNPERVA 367

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPD DID   DRR E++ Y++N+YG + VAQI+TF +L  + ALRDVG+A  M  +++  
Sbjct: 368  MPDIDIDMPDDRRAELLAYMKNRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELSN 427

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            L +++              ++ RF+   L +  + R+ E+++++EG+ R  STHA+G+V+
Sbjct: 428  LTRMLVRRFG--TLADEYENNQRFKAEVLKNGKLKRIYEVARRIEGMPRQTSTHASGVVL 485

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
             +  L   V +      DL +TQ+    +E  GL+K DFLGL+ LT++ +  D + +R  
Sbjct: 486  SEESLMNYVSL--KPSEDLALTQYEAPDVEAIGLLKIDFLGLRNLTIISRLRDLVKKRQK 543

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            + +D   I  +D  T  L     T+GIFQ E+  MR+ L  + P   +DI+   S++RPG
Sbjct: 544  IDIDPLKIDLEDETTLALFRAGNTMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPG 603

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P   I  +  R++GKE +  +   I  +LK T G++IYQEQ+MQ+AQ  +G+SL +AD+L
Sbjct: 604  PSQFIPQFVARRHGKEIVPVVDDSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLL 663

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRA+ KK   E++K +E F+  A + G SK  A  I++L+ +FA+YGFN+SH  AY  ++
Sbjct: 664  RRAISKKKGSELEKLREDFLISAGELGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALA 723

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            +Q A+ K H+P EF    +      V  +     DA     +I  P++N   +   V + 
Sbjct: 724  FQIAYFKAHFPDEFYEIQLRDRKREVMIL-----DALDNGFEIEKPNINQMKIGDFVKNK 778

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            +I   LA ++G+    A+ I+E   ++ + +L DF  ++ +    +  +  L+  GA D 
Sbjct: 779  KIRLGLAHVQGISRDLAKWIVE---NQSYKNLADFVEKLPNNFHKKESILPLIQIGAFDY 835

Query: 894  FGYSRMQL---LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
               +R +L   L    N+  Y            ++IF    G         +    + + 
Sbjct: 836  ADSNRGKLAYNLADHANLLNYYS----------DDIFMASSGGG---FAYHEAEDYSETE 882

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            +++ E+ +LG   + HPL                  V   +   + +   +   +  +T+
Sbjct: 883  KYDFEKNLLGIGVTPHPLQSLAQRFSG-NFTPIANLV---KNRRMTILVEINYIRTHRTK 938

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
             G  + ++T S+  + ++   FP
Sbjct: 939  TGQTMAFLTVSDSRENFDVTLFP 961


>gi|189043217|ref|YP_001936156.1| gp65 [Mycobacterium phage Adjutor]
 gi|188090868|gb|ACD49650.1| gp65 [Mycobacterium phage Adjutor]
          Length = 1100

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 262/949 (27%), Positives = 418/949 (44%), Gaps = 65/949 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV L  HS++S  +G   +   + ++A     A+A+T+  NL S  +  +     GI+PI
Sbjct: 37  FVSLHTHSTFSYGDGYGPVKEHVQRVAELGMGALALTEHGNLSSHAQLEKACNEIGIKPI 96

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            GC+L +      +                +L     G Q L  +V++ +      +   
Sbjct: 97  FGCELYVAPPGENRK-----------CHQTVLAMNEVGLQNLNRIVTKSW--KNFYRWPT 143

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-------------SSQVAEKRLLTFKKL 177
                L+E   EGLI+L+G +   +                        A   +  ++++
Sbjct: 144 TSWKMLEE-HNEGLIVLSGCADSVLSCTLLGGKSYGDKRLTASKRDIARAAGLIGRYQEV 202

Query: 178 FGDRLYVNLQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
           FGDR Y+  QR  G DR       + +L+      LV T +  +    D E   +L A  
Sbjct: 203 FGDRYYLEAQRFPGLDRTCALNPLLARLSELTGARLVGTADVHYPRGSDNEMQKILHAAH 262

Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD----------LPEALENTVEIARRCSFIL 285
             + V +        D  L        I+ D            EA+  +  IA RC+ IL
Sbjct: 263 RGSTV-EATEASWEYDILLTYPESDREIYMDLVGTGLTKAQAREAVLESGRIAERCNVIL 321

Query: 286 QVHAPILPRFIEKECDDIQ-KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
             + PI      KE D  +     NEL  K +                + Q Y+ R++ E
Sbjct: 322 PKNQPIRFPKPTKEVDGTKVPMSANELIRKWLNEGWHFRMATNPNMRKNRQAYKARVEHE 381

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL- 403
           L ++    F  YFL+++D ++WAK + IPVGP RGS A S+  Y L IT++DP+ F  + 
Sbjct: 382 LGMMEEKDFLDYFLVLSDAVRWAKDHKIPVGPARGSAAASLVCYLLRITEVDPMLFPHML 441

Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
           FERF++P R  +PD D+DF  DRR EV RY++ KYG +RV  I  F   + K ++ DV R
Sbjct: 442 FERFIDPTRTELPDVDLDFSDDRRIEVKRYLEEKYGADRVGNIGNFTRYRGKNSIDDVAR 501

Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
              +P  + + +  LI         +  ++ D         A       L  + +LEG Y
Sbjct: 502 VYNIPVWETEIVKNLIIERSGGDSRISDSLEDTFNMFPKAAAVLERHPELANAIRLEGNY 561

Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLT 580
           R    HAAGIVI + P++    +Y    +     V  ++ K  E  G++K DFLGL T+ 
Sbjct: 562 RGMGVHAAGIVISNTPITDTCAVYERESAGKTTQVIAYDKKDGEYVGMLKADFLGLSTMG 621

Query: 581 LLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           ++  +LD +       DL  IP DD +           GIFQ E    R     + PD  
Sbjct: 622 MIGIALDMIG--MDLEDLYRIPLDDQKVLEAFRRGDVTGIFQFEGRATRIVCSDVVPDHF 679

Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
           + +  + +L RPGP+ + +   Y   K+G++     HP++D +   T G ++YQEQV+  
Sbjct: 680 QHLADINALSRPGPLFSGMTAAYCEVKHGRKTPERYHPILDNLTDWTYGQVVYQEQVLST 739

Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG--ASKNGISKTIAVNIFELLAKF 756
            + L G+ +SE   +R+ + +K+ E   + K +         +G +   A  I+  LA  
Sbjct: 740 IRELGGFPMSEVHSIRKIISQKLGEAQFEAKYKMFEDNACQNHGCTPEQAQKIWRFLATS 799

Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
           A Y FN +H  +Y++++Y   W+K H+P  F AA +    D  EK+ K  +DA + NI I
Sbjct: 800 ATYSFNIAHCISYSMLAYWQMWIKQHHPTAFYAAQLRKVND--EKLYKLMRDAVRHNISI 857

Query: 817 MPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFD-------SLEDF 868
           +PPS+N     +    +  +      I GVG  T+  I+E    K          S  D 
Sbjct: 858 LPPSINESMASWSAPMEGVVRAGFLQIPGVGPKTSEVIVEWRNQKIRKGQKAIAASAPDL 917

Query: 869 C--SRVDSKKLNRRVLESL-VFAGALDCFGYSR-MQLLQSLDNIQKYAQ 913
                ++ K +  + +E +  F  A D FG +R   L +SL  I K   
Sbjct: 918 MWSDLLEVKGIGPKSIEKIVAFCEAEDPFGLNRVQDLFKSLRRIIKPGN 966


>gi|206599684|ref|YP_002241563.1| gp65 [Mycobacterium phage Butterscotch]
 gi|206599860|ref|YP_002241480.1| gp66 [Mycobacterium phage Troll4]
 gi|206282866|gb|ACI06353.1| gp65 [Mycobacterium phage Butterscotch]
 gi|206283102|gb|ACI06527.1| gp66 [Mycobacterium phage Troll4]
          Length = 1100

 Score =  432 bits (1110), Expect = e-118,   Method: Composition-based stats.
 Identities = 262/949 (27%), Positives = 418/949 (44%), Gaps = 65/949 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV L  HS++S  +G   +   + ++A     A+A+T+  NL S  +  +     GI+PI
Sbjct: 37  FVSLHTHSTFSYGDGYGPVKEHVQRVAELGMGALALTEHGNLSSHAQLEKACNEIGIKPI 96

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            GC+L +      +                +L     G Q L  +V++ +      +   
Sbjct: 97  FGCELYVAPPGENRK-----------CHQTVLAMNEVGLQNLNRIVTKSW--KNFYRWPT 143

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-------------SSQVAEKRLLTFKKL 177
                L+E   EGLI+L+G +   +                        A   +  ++++
Sbjct: 144 TSWKMLEE-HNEGLIVLSGCADSVLSCTLLGGKSYGDKRLTASKRDIARAAGLIGRYQEV 202

Query: 178 FGDRLYVNLQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
           FGDR Y+  QR  G DR       + +L+      LV T +  +    D E   +L A  
Sbjct: 203 FGDRYYLEAQRFPGLDRTCALNPLLARLSELTGARLVGTADVHYPRGSDNEMQKILHAAH 262

Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD----------LPEALENTVEIARRCSFIL 285
             + V +        D  L        I+ D            EA+  +  IA RC+ IL
Sbjct: 263 RGSTV-EATEASWEYDILLTYPESDREIYMDLVGTGLTKAQAREAVLESGRIAERCNVIL 321

Query: 286 QVHAPILPRFIEKECDDIQ-KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
             + PI      KE D  +     NEL  K +                + Q Y+ R++ E
Sbjct: 322 PKNQPIRFPKPTKEVDGTKVPMSANELIRKWLNEGWHFRMATNPNMRKNRQAYKARVEHE 381

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL- 403
           L ++    F  YFL+++D ++WAK + IPVGP RGS A S+  Y L IT++DP+ F  + 
Sbjct: 382 LGMMEEKDFLDYFLVLSDAVRWAKDHKIPVGPARGSAAASLVCYLLRITEVDPMLFPHML 441

Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
           FERF++P R  +PD D+DF  DRR EV RY++ KYG +RV  I  F   + K ++ DV R
Sbjct: 442 FERFIDPTRTELPDVDLDFSDDRRIEVKRYLEEKYGADRVGNIGNFTRYRGKNSIDDVAR 501

Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
              +P  + + +  LI         +  ++ D         A       L  + +LEG Y
Sbjct: 502 VYNIPVWETEIVKNLIIERSGGDSRISDSLEDTFNMFPKAAAVLERHPELANAIRLEGNY 561

Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLT 580
           R    HAAGIVI + P++    +Y    +     V  ++ K  E  G++K DFLGL T+ 
Sbjct: 562 RGMGVHAAGIVISNTPITDTCAVYERESAGKTTQVIAYDKKDGEYVGMLKADFLGLSTMG 621

Query: 581 LLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           ++  +LD +       DL  IP DD +           GIFQ E    R     + PD  
Sbjct: 622 MIGIALDMIG--MDLEDLYRIPLDDQKVLEAFRRGDVTGIFQFEGRATRIVCSDVVPDHF 679

Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
           + +  + +L RPGP+ + +   Y   K+G++     HP++D +   T G ++YQEQV+  
Sbjct: 680 QHLADINALSRPGPLFSGMTAAYCEVKHGRKTPERYHPILDNLTDWTYGQVVYQEQVLST 739

Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG--ASKNGISKTIAVNIFELLAKF 756
            + L G+ +SE   +R+ + +K+ E   + K +         +G +   A  I+  LA  
Sbjct: 740 IRELGGFPMSEVHSIRKIISQKLGEAQFEAKYKMFEDNACQNHGCTPEQAQKIWRFLATS 799

Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
           A Y FN +H  +Y++++Y   W+K H+P  F AA +    D  EK+ K  +DA + NI I
Sbjct: 800 ATYSFNIAHCISYSMLAYWQMWIKQHHPTAFYAAQLRKVND--EKLYKLMRDAVRHNISI 857

Query: 817 MPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFD-------SLEDF 868
           +PPS+N     +    +  +      I GVG  T+  I+E    K          S  D 
Sbjct: 858 LPPSINESMASWSAPMEGVVRAGFLQIPGVGPKTSEVIVEWRNQKIRKGQKAIAASAPDL 917

Query: 869 C--SRVDSKKLNRRVLESL-VFAGALDCFGYSR-MQLLQSLDNIQKYAQ 913
                ++ K +  + +E +  F  A D FG +R   L +SL  I K   
Sbjct: 918 MWSDLLEVKGIGPKSIEKIVAFCEAEDPFGLNRVQDLFKSLRRIIKPGN 966


>gi|116491030|ref|YP_810574.1| DNA polymerase III, alpha subunit [Oenococcus oeni PSU-1]
 gi|290890511|ref|ZP_06553586.1| hypothetical protein AWRIB429_0976 [Oenococcus oeni AWRIB429]
 gi|116091755|gb|ABJ56909.1| DNA polymerase III, alpha subunit [Oenococcus oeni PSU-1]
 gi|290479907|gb|EFD88556.1| hypothetical protein AWRIB429_0976 [Oenococcus oeni AWRIB429]
          Length = 960

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 272/1034 (26%), Positives = 442/1034 (42%), Gaps = 128/1034 (12%)

Query: 10   SFVHLQVHSSYSLL---EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            S+  LQV S Y LL   +  +    ++  +      A  + + + L+ A +F Q A +  
Sbjct: 2    SYTPLQVFSEYDLLRNPDSTI---ELVKALKKRGFQAAVLANHDYLYGAEKFRQAAISVN 58

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-RMYLLDQG 125
            I+PIIG  L I   D+ +              ++ +     GYQ L+++ +   +  +  
Sbjct: 59   IRPIIG--LTISDTDHGE--------------VIFVSKNYSGYQNLMKISTYLAFNKN-- 100

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                                           +     ++       L F+          
Sbjct: 101  ------------------------------SQFILKENNLDFSNLALIFQD--------- 121

Query: 186  LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                                  ++     N+S F  +E        +    S   S    
Sbjct: 122  ------------------GKETKIK----NSSSFTRKELGYFPIDWVKKNDSVTASALQH 159

Query: 246  PRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIARRCSFIL----QVHAPILPRFIEKEC 300
                  ++      +     D    A     EI +     +                   
Sbjct: 160  IEKNELNFTGKSEIVGKYLKDENFYASNLPDEILKNNQHFIADIVDDWPKSEKHLPIFPL 219

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             D +   +  L      GLE              + Y++R+D EL  I ++  + YFL+V
Sbjct: 220  PDSENNPKKYLSKLVKLGLE-----NRFKNKDIPEAYQKRIDRELRTIFQLDLADYFLVV 274

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D I +A+  NI +G GRGS  GS+ AYAL IT IDP+++ L FERFLNP R+ +PD DI
Sbjct: 275  WDIINFARHENIQLGAGRGSAVGSLVAYALYITTIDPIKYDLYFERFLNPKRIQLPDIDI 334

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D   +RR E++ Y+Q KY  +  +QI TF + + + A+RD  R        + R      
Sbjct: 335  DVPGNRRQEIVEYLQKKYSLDNFSQIGTFDTFKRRLAVRDSARIFASSEGTLKRFS---- 390

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
               A        AD +   E     P+   ++ ++Q + GL RH   HAAGIV+    L 
Sbjct: 391  RFMAQNNDALEDADPNNLPETIAELPNSSEIISLAQSISGLPRHVGIHAAGIVLSPEKLV 450

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLS 599
              VP+ +   SD+ VTQF+   +E  GL+KFD L L  L ++      + Q    K +L 
Sbjct: 451  NYVPLNQ--VSDITVTQFDKDDVEAIGLVKFDLLRLTNLDMIADIRSLIQQHYGKKFNLD 508

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I  +D +         T GIFQ ES   + AL+ +     +DI+A+ +L RPGP +NI 
Sbjct: 509  SIDLNDKKVLDSFKNLQTNGIFQFESESAKSALKQIAVSSFDDIVAVNALNRPGPSENIP 568

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
            +Y   K     I  I   +  +L  T GVIIYQEQVMQIAQ+ +G++L EADV R A+G 
Sbjct: 569  IYAQGKKDPNHIEIIDKSLQKILLPTYGVIIYQEQVMQIAQVYAGFTLGEADVFRAAIGH 628

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K +E++  Q + FI GA + G  +  A  IF  + +FA+YGFNKSHA AY+ ++++ A++
Sbjct: 629  KNEEKLFAQHDAFIKGAVEKGHQQEQAEEIFAYIERFANYGFNKSHAVAYSKLAFEMAYL 688

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K ++P+EF +  +  +  N      + QD +   I+++ P +N     F      IY  L
Sbjct: 689  KIYFPLEFFSVLLNYDTKNS-----YLQDIKNKGIKLLGPDINHAERGFISDKGVIYVGL 743

Query: 840  AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
              IKG+       I++       F  L DF  R+    +    +  L +AG+LD FGY+R
Sbjct: 744  GKIKGLNRKVIDEIVKERNSHGLFSGLTDFLQRMAGSDIGESDIVQLTYAGSLDHFGYNR 803

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             +L  +  ++    +             F    G+   +  +      +   R  +E+ V
Sbjct: 804  QELKTNAASLITAME-------------FG---GSLLSETKISAIGEMSLLDRLAHEKEV 847

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LGF  SGHP+D  +  + K G     +  A      +++A M+ S +  + + G+++ +V
Sbjct: 848  LGFTISGHPIDSLRKEIVKKGYTQINDLKA---DQIVKMAVMIDSIRTTRDKNGNQMAFV 904

Query: 1019 TFSEPAKEYEANFF 1032
            + S+ + E     F
Sbjct: 905  SISDGSGESSLTVF 918


>gi|170764215|ref|ZP_02638356.2| DNA polymerase III, alpha subunit [Clostridium perfringens CPE str.
            F4969]
 gi|170715700|gb|EDT27882.1| DNA polymerase III, alpha subunit [Clostridium perfringens CPE str.
            F4969]
          Length = 783

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 243/664 (36%), Positives = 374/664 (56%), Gaps = 40/664 (6%)

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPD D DFC + R  VI YV  KYGH+ V+QIITFG++ A+A +RDVGRA+ 
Sbjct: 2    FLNPERVSMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMN 61

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
              Y++VDR+ K IP      +    +  +   +     +  V  L+++S++LEGL RH+S
Sbjct: 62   YTYAEVDRIAKQIPTVLGVTIDKA-LDLNPELKTIYDTEERVKELIDVSRRLEGLPRHSS 120

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            THAAG+VI  +PL + VP+ ++   +  VTQF+M  +E+ GL+K DFLGL+TLT+++ ++
Sbjct: 121  THAAGVVIASQPLVEYVPLQKN--DESIVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAV 178

Query: 587  DFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            D +   RGV +DL  + FDD E Y ++    T+G+FQLES+GM   ++ ++PDC+EDIIA
Sbjct: 179  DMIKYNRGVDIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIA 238

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
             +SLYRPGP+  I  Y + K   + +  I P ++ +L  T GV++YQEQVM+I + L+GY
Sbjct: 239  GISLYRPGPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGY 298

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISG------------ASKNGISKTIAVNIFELL 753
            S+  +D++RRAM KK  + M+++++ FI G              +NGIS   A  IF+ +
Sbjct: 299  SMGRSDLVRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSM 358

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNKSHAAAYAVI +QTA++  +YPVEFLAA +   M N +K+ ++ + A +  
Sbjct: 359  MDFASYAFNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLG 418

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV 872
            IQ++PP +N     F V  + I + + AIK VG     +I ++      F SL DFC+++
Sbjct: 419  IQVLPPDINESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGRFTSLMDFCNKI 478

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--E 930
            D   +N+R +ESL+ AG  D     R QLL   + I        K   +   ++F    E
Sbjct: 479  DLSIVNKRSVESLIKAGTFDSLKVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFGALQE 538

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-- 988
            +   + +I        N       E+ + G Y SGHPLD Y+  L++      E+ +   
Sbjct: 539  ESESNLEIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKEQTSITIEKIIEAQ 598

Query: 989  -------------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                                  G  + +  ++ +  +K TR  + + +    +     E 
Sbjct: 599  KNLNEQKNVELEDLVLDSSLTDGTRVIIGGILTNVSRKVTRNNTLMAFAKVEDLTGYLEC 658

Query: 1030 NFFP 1033
              FP
Sbjct: 659  VIFP 662


>gi|170763890|ref|ZP_02634742.2| DNA polymerase III subunit alpha [Clostridium perfringens B str. ATCC
            3626]
 gi|182420478|ref|ZP_02642185.2| DNA polymerase III, alpha subunit [Clostridium perfringens NCTC 8239]
 gi|170712862|gb|EDT25044.1| DNA polymerase III subunit alpha [Clostridium perfringens B str. ATCC
            3626]
 gi|182381484|gb|EDT78963.1| DNA polymerase III, alpha subunit [Clostridium perfringens NCTC 8239]
          Length = 783

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 243/664 (36%), Positives = 375/664 (56%), Gaps = 40/664 (6%)

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FLNP+R+SMPD D DFC + R  VI YV  KYGH+ V+QIITFG++ A+A +RDVGRA+ 
Sbjct: 2    FLNPERVSMPDIDSDFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMN 61

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
              Y++VDR+ K IP      +    +  +   +     +  V  L+++S++LEGL RH+S
Sbjct: 62   YTYAEVDRIAKQIPTVLGVTIDKA-LDLNPELKTIYDTEERVKELIDVSRRLEGLPRHSS 120

Query: 527  THAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            THAAG+VI  +PL + VP+ ++   +  VTQF+M  +E+ GL+K DFLGL+TLT+++ ++
Sbjct: 121  THAAGVVIASQPLVEYVPLQKN--DESIVTQFDMTTLEELGLLKMDFLGLRTLTVMRDAV 178

Query: 587  DFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            D +   RGV++DL  + FDD E Y ++    T+G+FQLES+GM   ++ ++PDC+EDIIA
Sbjct: 179  DMIKYNRGVEIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLEDIIA 238

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
             +SLYRPGP+  I  Y + K   + +  I P ++ +L  T GV++YQEQVM+I + L+GY
Sbjct: 239  GISLYRPGPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKLAGY 298

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISG------------ASKNGISKTIAVNIFELL 753
            S+  +D++RRAM KK  + M+++++ FI G              +NGIS   A  IF+ +
Sbjct: 299  SMGRSDLVRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIFDSM 358

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN 813
              FA Y FNKSHAAAYAVI +QTA++  +YPVEFLAA +   M N +K+ ++ + A +  
Sbjct: 359  MDFASYAFNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAEKLG 418

Query: 814  IQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV 872
            IQ++PP +N     F V  + I + + AIK VG     +I ++      F SL DFC+++
Sbjct: 419  IQVLPPDINESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGRFTSLMDFCNKI 478

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH--E 930
            D   +N+R +ESL+ AG  D     R QLL   + I        K   +   ++F    E
Sbjct: 479  DLSIVNKRSVESLIKAGTFDSLKVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFGALQE 538

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-- 988
            +   + +I        N       E+ + G Y SGHPLD Y+  L++      E+ +   
Sbjct: 539  ESESNLEIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKEQTSITIEKIIEAQ 598

Query: 989  -------------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                                  G  + +  ++ +  +K TR  + + +    +     E 
Sbjct: 599  KNLNEQKNVELEDLVLDSSLTDGTRVIIGGILTNVSRKVTRNNTLMAFAKVEDLTGYLEC 658

Query: 1030 NFFP 1033
              FP
Sbjct: 659  VIFP 662


>gi|116511322|ref|YP_808538.1| DNA polymerase III DnaE [Lactococcus lactis subsp. cremoris SK11]
 gi|116106976|gb|ABJ72116.1| DNA polymerase III catalytic subunit, DnaE type [Lactococcus lactis
            subsp. cremoris SK11]
          Length = 1070

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 283/1043 (27%), Positives = 491/1043 (47%), Gaps = 103/1043 (9%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F  L   + YS L+  + L++ L+         + I D  NL +A  F +KA    +QP+
Sbjct: 2    FAPLNTKTEYSFLDSVVKLDDYLEGALRLGYKTVGICDVGNLHAAFRFVRKAQMLNLQPV 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            I  +L+ + +      +              +    EGY+ L+ + +            R
Sbjct: 62   ISIELNFEWRGLPVSFS-------------FIAKNTEGYKNLLRIST-------FHNYDR 101

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               S +Q   + G+ ++   + G             A   L      F D  Y+ +    
Sbjct: 102  RQFSDIQNHLS-GIALVIPETYG-------------ALSELSELAA-FADEAYIGI---- 142

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D+  +           LP +      +L+  D E   +L AV    +   +     + 
Sbjct: 143  --DQQTDK-----GTKFNLPTLPFPAVRYLNFADNEILAILHAVRDG-LSFDESLTVSSN 194

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            +   +  +         P+AL N   +  + ++       +          D ++E    
Sbjct: 195  ELLQRPEAYESYFQKYFPQALTNLSVLTAKIAYPFDEKLELPR-------FDKKREAVEH 247

Query: 311  LRNKAVAGLEVRLAQGAIAKG----------------YHAQDYRQRLDFELNVIARMKFS 354
            LR +A+ GL  RL +     G                     Y++RL+ EL+VI +M F 
Sbjct: 248  LREEAILGLSARLEEKKSLTGISSVSLANALAEESTMIDLSVYQERLEKELSVIHQMGFD 307

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
             YFLIVAD +++A++ +I  G GRGS AGS+ AY L IT +DP++ +L FERFLNP+R++
Sbjct: 308  DYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDPVKHNLFFERFLNPERVA 367

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPD DID   DRR E++ Y++N+YG + VAQI+TF +L  + ALRDVG+A  M  +++  
Sbjct: 368  MPDIDIDMPDDRRAELLAYMKNRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELSN 427

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            L +++              ++ RF+   L +  + R+ E+++++EG+ R  STHA+G+V+
Sbjct: 428  LTRMLVRRFG--TLADEYENNQRFKAEVLKNGKLKRIYEVARRIEGMPRQTSTHASGVVL 485

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
             +  L   V +      DL +TQ+    +E  GL+K DFLGL+ LT++ +  D + +R  
Sbjct: 486  SEESLVNYVSL--KPSEDLALTQYEAPDVEAIGLLKIDFLGLRNLTIISRLRDLVKKRQK 543

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            + +D   I  +D  T  L     T+GIFQ E+  MR+ L  + P   +DI+   S++RPG
Sbjct: 544  IDIDPLKIDLEDEATLALFRAGNTMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPG 603

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P   I  +  R++GKE +  +   I  +LK T G++IYQEQ+MQ+AQ  +G+SL +AD+L
Sbjct: 604  PSQFIPQFVARRHGKEIVPVVDDSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLL 663

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            RRA+ KK   E++K +E F+  A + G SK  A  I++L+ +FA+YGFN+SH  AY  ++
Sbjct: 664  RRAISKKKGSELEKLREDFLISAGEMGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALA 723

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            +Q A+ K H+P EF    +      V  +     DA     +I  P++N   +   V + 
Sbjct: 724  FQIAYFKAHFPDEFYEIQLRDRKREVMIL-----DALDNGFEIEKPNINQMKIGDFVKNK 778

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            +I   LA ++G+    A+ I+E   ++ + +L DF  ++ +    +  +  L+  GA D 
Sbjct: 779  KIRLGLAHVQGISRDLAKWIVE---NQSYKNLADFVEKLPNNFHKKESILPLIQIGAFDY 835

Query: 894  FGYSRMQL---LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
               +R +L   L    N+  Y            ++IF    G         +    + + 
Sbjct: 836  ADSNRGKLAYNLADHANLLNYYS----------DDIFMASSGGG---FAYHEAEDYSETE 882

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
            +++ E+ +LG   + HPL                  V   + + + +   +   +  +T+
Sbjct: 883  KYDFEKNLLGIGVTPHPLQSLAQRFSG-NFTPIANLV---KNSRMTILVEINYIRTHRTK 938

Query: 1011 KGSRIGWVTFSEPAKEYEANFFP 1033
             G  + ++T S+  + ++   FP
Sbjct: 939  TGQTMAFLTVSDSRENFDVTLFP 961


>gi|206599772|ref|YP_002241961.1| gp68 [Mycobacterium phage Gumball]
 gi|206282986|gb|ACI06440.1| gp66 [Mycobacterium phage Gumball]
          Length = 1100

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 262/949 (27%), Positives = 418/949 (44%), Gaps = 65/949 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV L  HS++S  +G   +   + ++A     A+A+T+  NL S  +  +     GI+PI
Sbjct: 37  FVSLHTHSTFSYGDGYGPVKEHVQRVAELGMGALALTEHGNLSSHAQLEKACNEIGIKPI 96

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            GC+L +      +                +L     G Q L  +V++ +      +   
Sbjct: 97  FGCELYVAPPGENRK-----------CHQTVLAMNEVGLQNLNRIVTKSW--KNFYRWPT 143

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-------------SSQVAEKRLLTFKKL 177
                L+E   EGLI+L+G +   +                        A   +  ++++
Sbjct: 144 TSWKMLEE-HNEGLIVLSGCADSVLSCTLLGGKSYGDKRLTASKRDIARAAGLIGRYQEV 202

Query: 178 FGDRLYVNLQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
           FGDR Y+  QR  G DR       + +L+      LV T +  +    D +   +L A  
Sbjct: 203 FGDRYYLEAQRFPGLDRTCALNPLLARLSELTGARLVGTADVHYPRGSDNDMQKILHAAH 262

Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD----------LPEALENTVEIARRCSFIL 285
             + V +        D  L        I+ D            EA+  +  IA RC+ IL
Sbjct: 263 RGSTV-EATEASWEYDILLTYPESDREIYMDLVGTGLTKAQAREAVLESGRIAERCNVIL 321

Query: 286 QVHAPILPRFIEKECDDIQ-KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
             + PI      KE D  Q     NEL  K +                + Q Y+ R++ E
Sbjct: 322 PKNQPIRFPKPTKEVDGTQVPMSANELIRKWLNEGWHFRMATNPNMRKNRQAYKARVEHE 381

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL- 403
           L ++    F  YFL+++D ++WAK + IPVGP RGS A S+  Y L IT++DP+ F  + 
Sbjct: 382 LGMMEEKDFLDYFLVLSDAVRWAKDHKIPVGPARGSAAASLVCYLLRITEVDPMLFPHML 441

Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
           FERF++P R  +PD D+DF  DRR EV RY++ KYG +RV  I  F   + K ++ DV R
Sbjct: 442 FERFIDPTRTELPDVDLDFSDDRRIEVKRYLEEKYGADRVGNIGNFTRYRGKNSIDDVAR 501

Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
              +P  + + +  LI         +  ++ D         A       L  + +LEG Y
Sbjct: 502 VYNIPVWETEIVKNLIIERSGGDSRISDSLEDTFNMFPKAAAVLERHPELANAIRLEGNY 561

Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLT 580
           R    HAAGIVI + P++    +Y    +     V  ++ K  E  G++K DFLGL T+ 
Sbjct: 562 RGMGVHAAGIVISNTPITDTCAVYERESAGKTTQVIAYDKKDGEYVGMLKADFLGLSTMG 621

Query: 581 LLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           ++  +LD +       DL  IP DD +           GIFQ E    R     + PD  
Sbjct: 622 MIGIALDMIG--MDLEDLYRIPLDDQKVLEAFRRGDVTGIFQFEGRATRIVCSDVVPDHF 679

Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
           + +  + +L RPGP+ + +   Y   K+G++     HP++D +   T G ++YQEQV+  
Sbjct: 680 QHLADINALSRPGPLFSGMTAAYCEVKHGRKTPERYHPILDNLTDWTYGQVVYQEQVLST 739

Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG--ASKNGISKTIAVNIFELLAKF 756
            + L G+ +SE   +R+ + +K+ E   + K +         +G +   A  I+  LA  
Sbjct: 740 IRELGGFPMSEVHSIRKIISQKLGEAQFEAKYKMFEDNACQNHGCTPEQAQKIWRFLATS 799

Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
           A Y FN +H  +Y++++Y   W+K H+P  F AA +    D  EK+ K  +DA + NI I
Sbjct: 800 ATYSFNIAHCISYSMLAYWQMWIKQHHPTAFYAAQLRKVND--EKLYKLMRDAVRHNISI 857

Query: 817 MPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFD-------SLEDF 868
           +PPS+N     +    +  +      I GVG  T+  I+E    K          S  D 
Sbjct: 858 LPPSINESMASWSAPMEGVVRAGFLQIPGVGPKTSEVIVEWRNQKIRKGQKAIAASAPDL 917

Query: 869 C--SRVDSKKLNRRVLESL-VFAGALDCFGYSR-MQLLQSLDNIQKYAQ 913
                ++ K +  + +E +  F  A D FG +R   L +SL  I K   
Sbjct: 918 MWSDLLEVKGIGPKSIEKIVAFCEAEDPFGLNRVQDLFKSLRRIIKPGN 966


>gi|312867739|ref|ZP_07727945.1| DNA polymerase III, alpha subunit [Streptococcus parasanguinis F0405]
 gi|311096802|gb|EFQ55040.1| DNA polymerase III, alpha subunit [Streptococcus parasanguinis F0405]
          Length = 1033

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 288/1025 (28%), Positives = 493/1025 (48%), Gaps = 105/1025 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   S Y+ +E  +++ + +    +    A+ I D +NL+ A EF +   A  ++P++
Sbjct: 3    AQLDTKSVYTFMESLVTIKDYVHVAKSMGYDALGIMDVDNLYGAYEFIEACQAHNLRPLV 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ +++ +                 ++ L  T +GYQ L+++ +   +          
Sbjct: 63   GLEIGLEVDNETIP-----------FRMMAL--TTKGYQNLMKMSTVKMMGKN------- 102

Query: 132  CLSWLQEIGTEGLIMLTGGS--SGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
                + +  TEG+ ++      SG +                           ++ +   
Sbjct: 103  NWEDV-KHLTEGVAVIVPAPFASGDLPLGL---------------------DYFIGVFAD 140

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                 +             LPL   +   F    D EA  +L A+  +  +++      T
Sbjct: 141  TPVQEF---------SHLVLPL---HTVRFFEAGDVEAMQMLAAIKDNQSLTETGPIDPT 188

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                   +          P+A+ N  ++ +   + +     +          + QK    
Sbjct: 189  TVLKTP-QDLKNDFAERFPQAITNLEKLVQGIQYDIDTQLKLPR-------FNPQKPAVE 240

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            ELR  A AG         + K   +  Y++RL+ EL++I +M F  YFLIV D +++ + 
Sbjct: 241  ELRKLAQAG--------LLRKNLTSPVYQERLEHELDIIHQMGFDDYFLIVWDLLRFGRS 292

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS  GS+ AYAL IT IDP+  +LLFERFLN +R +MPD DID     R E
Sbjct: 293  QGYYMGMGRGSAVGSLVAYALGITGIDPVEKNLLFERFLNVERYTMPDIDIDIPDIYRPE 352

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             IRYV+++YG    AQI+TF +  AK A+RDV +   +P  ++  + K I          
Sbjct: 353  FIRYVRDRYGSYHAAQIVTFSTFGAKQAIRDVFKRFGVPEYELTSITKRIGY---RDTLT 409

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             A   +  FR+   +    +R  EI++++EG  R  S HAAG+V+ D+ L+  +P+    
Sbjct: 410  TAYEQNLAFRQVIHSRAEFERGFEIAKRIEGQPRQTSIHAAGVVMSDQDLTDHIPLKYG- 468

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHET 608
              D+ VTQ++   +E  GL+K DFLGL+ LT +QK  +    +   ++ +  I  +D ET
Sbjct: 469  -EDMFVTQYDAHAVEANGLLKMDFLGLRNLTFVQKMKEAVYEKYQEEIVIEAIDLEDPET 527

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T GIFQ E +G  + L  ++P+  E+++A  SL RPG  D I  +  RK+G+
Sbjct: 528  LALFAAGDTKGIFQFEQAGAIRLLRRVRPNHFEEVVATTSLNRPGASDYIDNFVKRKHGQ 587

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EK+  + P I+ +L+ T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK   EM K 
Sbjct: 588  EKVEILDPAIEEILRPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKNAAEMHKM 647

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            ++ F++GA K G ++  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 648  EDDFVAGALKLGHTEEKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQMAYFKVHYPDVFF 707

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +            +  DA QF+ ++ P S+NT     K  D +IY  +  IKG+   
Sbjct: 708  DVMLN------YSSSDYLADALQFDFKVAPLSINTIPYRDKFQDRKIYLGMKNIKGLPRD 761

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I++   ++PF+S+EDF  R+ ++     +L  LV  G  D F  +R ++L +L N+
Sbjct: 762  LAYWIID---NRPFESVEDFILRLPNQYHKLPLLTPLVELGLFDIFEKNRRKVLHNLPNL 818

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +A  +         ++F +   ++++          + + ++E E+ ++G   S HPL
Sbjct: 819  FVFADEL--------GSLFGNSNYSWTEA------EDFSQAEKYEKEEAIIGIGLSTHPL 864

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                       I+   + V    G   R+   V + +  +T+ G  + ++  S+  K+ +
Sbjct: 865  VAIGQT-SPYEIQPISQLVQ---GEQARILIEVQNIRTIRTKSGDLMAFLQVSDTKKKLD 920

Query: 1029 ANFFP 1033
               FP
Sbjct: 921  VTLFP 925


>gi|308177546|ref|YP_003916952.1| putative DNA polymerase III subunit alpha [Arthrobacter arilaitensis
            Re117]
 gi|307745009|emb|CBT75981.1| putative DNA polymerase III subunit alpha [Arthrobacter arilaitensis
            Re117]
          Length = 1151

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 258/1100 (23%), Positives = 451/1100 (41%), Gaps = 121/1100 (11%)

Query: 10   SFVHLQVHSSYSLLEGALSLNN-----------ILDKIAADQQPAIAITDTNNLFSALEF 58
            SF HL V SSYS   G                 +           +A+TD + L+  ++ 
Sbjct: 2    SFTHLNVSSSYSAHYGVSHPKQLAQAAKAQGAQM-----------LALTDRDGLYGTVKH 50

Query: 59   SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS---TAEGYQRLIEL 115
                 A G+ PI+G  L +                 T   I+LL        GY  L   
Sbjct: 51   VAACMAEGLDPILGVNLAVLDTHG-----------DTHGRIILLARGRCNGAGYAALCRA 99

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            ++  +          + +  L  +   G ++L  G    + RA    S   A   L  +K
Sbjct: 100  ITLAHSTA--HGVPGLRIEQLAHLAAAGNLVLLLGGESDVARAILKGSYTQARALLAGWK 157

Query: 176  KLFGDRLYVNL--------QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            K  G  L V +         R+   +  R   +++ A+   +  V TN   ++  +    
Sbjct: 158  KRLGKMLRVEIATYLSSPGSRYSLGEAAR---LLRYAHERGIKAVLTNAVRYVDPDGAVT 214

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
             D+L +      +   D  +     +LK   +M  +  ++ +A E +             
Sbjct: 215  ADILDSARALHSLKNLDSCQPNGQGWLKTPQQMRQLAKEIGQATEKSWAHQLLRETEALA 274

Query: 288  HAPILPRFIEKECDDIQKEEENE--LRNKAVAG--LEVRLAQGAIAKGYHAQDYRQRLDF 343
                +    +         E     LR  A+      V  A   +          +RL  
Sbjct: 275  EWAAVDPVADLGWKKPVIPEAKVIGLRRPAMQELTERVHGAVPGLLGAEKRSVVEKRLAL 334

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
            EL VI R+ F+GYFL VA+ ++      I V   RGSGA S+  Y L I+ ++PL   L+
Sbjct: 335  ELGVIDRLDFAGYFLTVAETVKLITGMGIRVA-ARGSGASSLVNYLLGISQVNPLAHDLV 393

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FERFL+  R ++PD DID    RR E+ R + + +G ERV+ +    + +A+ A+RD G 
Sbjct: 394  FERFLSDTRTTLPDIDIDVESARRHEIYREIFSSFGEERVSLMSMQNAYRARGAVRDAGA 453

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL---EISQKLEG 520
            AL +   QVD + K +    A     +A+++               +L    + +++L+ 
Sbjct: 454  ALGVEQEQVDEIAKQLWRFSASSF-REALSEKPELAALAERITDDTQLDILIDATERLDR 512

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
            L RH S H  G+++ D  L    P+       L ++QF+   ++  GLIK D LG++  +
Sbjct: 513  LPRHISMHPCGVILSDASLLDRTPVQ-PSGIGLQMSQFDKHDMDLMGLIKLDVLGVRMQS 571

Query: 581  LLQKSLDFLAQRGVKVD---------------------LSLIPFDDHETYHLLTTKGTLG 619
             +  +L+ +A+                           L+ +P DD  T+ L+ +  TLG
Sbjct: 572  AIAYTLEEIARMHPDKRSAARAGGHVDDSYISATGVIDLARVPLDDEPTFELIRSTHTLG 631

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL 677
             FQ+ES G R+ +  + P    D+I  +SL+RPGP+ + +   Y   ++G      +HP 
Sbjct: 632  CFQIESPGQRELVGKLAPREFNDLIIDISLFRPGPMQSNMVKPYLEHRHGFAPAQYLHPD 691

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            + P L ET GV ++ EQV++I  +L+G  L  ADV RR +G   KE     +    + A+
Sbjct: 692  LIPALAETHGVTVFHEQVLRILHVLTGCGLGMADVYRRLLGDPEKEP--AVERYVRTEAA 749

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            K G ++     ++E+L+ F  +GF K+H AA+AV +Y +AW+K H+P  FLA     +  
Sbjct: 750  KRGYAQETIDKVWEVLSGFGSFGFCKAHGAAFAVPTYHSAWLKAHHPEAFLAGIWEHDPG 809

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---DNR-------------------- 834
               K +    +AR+  + I+P  +N     ++V    ++                     
Sbjct: 810  MYPK-RLLVSEARRMGVPILPLDINRSTGHYRVERIFEHAPAAVPAVPRAVGSQRPGRYG 868

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I  +   I  +     + ++   A +P++ L D  +R     L+RR  ++L   G  D  
Sbjct: 869  IRLAFRDIHQMSEREVQRLV---AGQPYEHLADVRARA---GLSRRTYQNLAALGVFDSL 922

Query: 895  --GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
              G SR   +    ++   +   +         +            T ++    + +   
Sbjct: 923  LTGTSRADTIAHTQSMSHSSLPAKYRPGPGQLAL--DLGRIEHIAETGKQL---DPADIV 977

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             NE  ++    S H +  Y+  L  + I    E +    G  + +A + V+ Q    R G
Sbjct: 978  RNELDLMHLDASEHLITSYRQRLAHLTITQAAELLHLRNGTEVLVAGVRVATQTPPMRGG 1037

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
             R+ +++  + +   +A FF
Sbjct: 1038 KRVVFISVDDGSGCIDATFF 1057


>gi|253699165|ref|YP_003020354.1| DNA polymerase III subunit alpha [Geobacter sp. M21]
 gi|251774015|gb|ACT16596.1| DNA polymerase III, alpha subunit [Geobacter sp. M21]
          Length = 1079

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 275/1095 (25%), Positives = 453/1095 (41%), Gaps = 130/1095 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+HL  HSS S   G  S   +    A      +AITD N L+    F   A   GI PI
Sbjct: 2    FIHLHAHSSLSPNWGVHSPETLCSHAALLGFNTLAITDRNGLYGVPRFLDAARETGISPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG----- 125
            IG +                         VLL    EGY  +  L+S ++          
Sbjct: 62   IGTEA-----------------VTQNNRAVLLACNEEGYANISRLISDLHCQKNFDLTQA 104

Query: 126  ---KQSVRICLSW-------LQEIGTEGLIM-LTGGSSGPIDRAFFFN------SSQVAE 168
                +   I LS        L+    EGL + L+ G +         +      ++  A 
Sbjct: 105  LSEYRRGIIVLSDDRKLLSALKRKSEEGLFVELSPGHAMHSALTLARDLRLPPVATSRAL 164

Query: 169  KRLLTF-------KKLFGDRL--------YVNL---------QRHRGYD----RYRESQV 200
             R   +          +G ++        ++           QR RG        R + +
Sbjct: 165  LRATRYGRQAPPPATRYGRQVPPPATPGSFIAASDALTPTLSQRERGNGLNTLEERGNGL 224

Query: 201  -----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK-DRPRVTPDHYL 254
                  QL     L     N       +D+  H VL A+  +T +S+       T    L
Sbjct: 225  NTPVESQLTGNDGLAEYLDNAGTSPQLDDFHLHRVLRAIHLNTKLSRLTPEMTATESDAL 284

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
                +M   F   PEAL+N++ IA  C       + I         +   +     L+ +
Sbjct: 285  YPAQKMAEFFPHCPEALQNSIRIASLCKTDWDFSSTI----FPAFRELGTEAAFETLQER 340

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
            A  G            G      + RLD EL++I    FS YFL+V +  + +++     
Sbjct: 341  ARQGAIW-------RYGSIDDRVQARLDKELSIIRDKGFSHYFLVVEELTKQSERT---- 389

Query: 375  GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
              GRGS A S+ AY L IT +DP+R +L FERFLN  R   PD D+DF  D RD ++ + 
Sbjct: 390  -CGRGSAAASLVAYCLAITHVDPIRHNLFFERFLNEGRSDPPDIDVDFPWDERDAILDFA 448

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
              +YG  R A +      + ++ALR+V +   +P  ++  + + I        S  A++ 
Sbjct: 449  FARYGAHRAAMVANQVGFKGRSALREVAKVYGLPDYEIKEMTERISGFWRAEQSAAAMSG 508

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
               F+   L+      ++  +++L G  RH S H  G+VI    + + VP+       LP
Sbjct: 509  HPLFKGESLSSD-WQEIMSTARRLNGQLRHLSLHCGGLVIVPDEIRKYVPVE-ISHKGLP 566

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--VKVDLSLIPFDDHETYHLL 612
            + Q+     E AGL+K D LG ++L +++ ++  + ++        +  P DD  T  LL
Sbjct: 567  LIQWEKDQTEDAGLVKIDILGNRSLAVIRDAMAAVKEQKGVEIDYATWRPLDDERTQSLL 626

Query: 613  TTKGTLGIFQLESSGMRQALEG----------MQPDCIEDIIALVSLYRPGPIDNIVVYN 662
                T+G F LES  +R  L             + D  E ++   S+ RP     I  Y 
Sbjct: 627  RRGLTIGCFYLESPSVRLLLRKIWSSTAPPETFRHDLFEVLVQASSIIRPAANSFIQEYV 686

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R  GK     +HPL++ +L ET G+ IYQEQ+ QIA  L+G+S  E D LR+ + KK +
Sbjct: 687  ARLQGK-PWSHLHPLLESVLGETLGIAIYQEQITQIAMELAGFSAGEGDQLRKVITKKHR 745

Query: 723  EEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            E+     + +F++G  + G+ + +   I++ +  FA Y F K H+A+YA++S + A+MK 
Sbjct: 746  EKRLADFRAKFMAGGMERGVPEKVLQGIWDQILSFAGYSFCKPHSASYALLSGKAAYMKA 805

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            ++P +F+AA ++ +         +  + R+  + I+PP +N     +   +  +   L  
Sbjct: 806  NHPAQFIAAVISNQ-GGYYSPFAYISEGRRLGLAILPPDINESEYHYTGKEQTLRVGLMQ 864

Query: 842  IKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS--R 898
            I G+    A  ++ E      F S ++F  R    +L R   E LV AG  D       R
Sbjct: 865  IDGLTRDGADRLLKERREHGAFASFKEFLRRA---RLQRADAERLVKAGCFDALEGEEKR 921

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              LL  L + Q+ A  +          +F         K  L      ++ +    E   
Sbjct: 922  PTLLWELLHFQQQATAL----------LF-------EQKTELPHPPPYDAQMVLRQEVET 964

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            LGF  S HPL +YK   ++       E +    G  + +    ++ +  + + G  + ++
Sbjct: 965  LGFLVSRHPLALYKAQWQRHRPIKASELIR-HTGKWVTMVGWWITTKTVEDKHGRPMEFI 1023

Query: 1019 TFSEPAKEYEANFFP 1033
            +F +    ++A FFP
Sbjct: 1024 SFEDVTAIFDATFFP 1038


>gi|109522839|ref|YP_655259.1| gp63 [Mycobacterium phage PBI1]
 gi|88910552|gb|ABD58479.1| gp63 [Mycobacterium phage PBI1]
          Length = 1066

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 262/949 (27%), Positives = 418/949 (44%), Gaps = 65/949 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV L  HS++S  +G   +   + ++A     A+A+T+  NL S  +  +     GI+PI
Sbjct: 3   FVSLHTHSTFSYGDGYGPVKEHVQRVAELGMGALALTEHGNLSSHAQLEKACNEIGIKPI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            GC+L +      +                +L     G Q L  +V++ +      +   
Sbjct: 63  FGCELYVAPPGENRK-----------CHQTVLAMNEVGLQNLNRIVTKSW--KNFYRWPT 109

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-------------SSQVAEKRLLTFKKL 177
                L+E   EGLI+L+G +   +                        A   +  ++++
Sbjct: 110 TSWKMLEE-HNEGLIVLSGCADSVLSCTLLGGKSYGDKRLTASKRDIARAAGLIGRYQEV 168

Query: 178 FGDRLYVNLQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
           FGDR Y+  QR  G DR       + +L+      LV T +  +    D E   +L A  
Sbjct: 169 FGDRYYLEAQRFPGLDRTCALNPLLARLSELTGARLVGTADVHYPRGSDNEMQKILHAAH 228

Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD----------LPEALENTVEIARRCSFIL 285
             + V +        D  L        I+ D            EA+  +  IA RC+ IL
Sbjct: 229 RGSTV-EATEASWEYDILLTYPESDREIYMDLVGTGLTKAQAREAVLESGRIAERCNVIL 287

Query: 286 QVHAPILPRFIEKECDDIQ-KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
             + PI      KE D  +     NEL  K +                + Q Y+ R++ E
Sbjct: 288 PKNQPIRFPKPTKEVDGTKVPMSANELIRKWLNEGWHFRMATNPNMRKNRQAYKARVEHE 347

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL- 403
           L ++    F  YFL+++D ++WAK + IPVGP RGS A S+  Y L IT++DP+ F  + 
Sbjct: 348 LGMMEEKDFLDYFLVLSDAVRWAKDHKIPVGPARGSAAASLVCYLLRITEVDPMLFPHML 407

Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
           FERF++P R  +PD D+DF  DRR EV RY++ KYG +RV  I  F   + K ++ DV R
Sbjct: 408 FERFIDPTRTELPDVDLDFSDDRRIEVKRYLEEKYGADRVGNIGNFTRYRGKNSIDDVAR 467

Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
              +P  + + +  LI         +  ++ D         A       L  + +LEG Y
Sbjct: 468 VYNIPVWETEIVKNLIIERSGGDSRISDSLEDTFNMFPKAAAVLERHPELANAIRLEGNY 527

Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLT 580
           R    HAAGIVI + P++    +Y    +     V  ++ K  E  G++K DFLGL T+ 
Sbjct: 528 RGMGVHAAGIVISNTPITDTCAVYERESAGKTTQVIAYDKKDGEYVGMLKADFLGLSTMG 587

Query: 581 LLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           ++  +LD +       DL  IP DD +           GIFQ E    R     + PD  
Sbjct: 588 MIGIALDMIG--MDLEDLYRIPLDDQKVLEAFRRGDVTGIFQFEGRATRIVCSDVVPDHF 645

Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
           + +  + +L RPGP+ + +   Y   K+G++     HP++D +   T G ++YQEQV+  
Sbjct: 646 QHLADINALSRPGPLFSGMTAAYCEVKHGRKTPERYHPILDNLTDWTYGQVVYQEQVLST 705

Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG--ASKNGISKTIAVNIFELLAKF 756
            + L G+ +SE   +R+ + +K+ E   + K +         +G +   A  I+  LA  
Sbjct: 706 IRELGGFPMSEVHSIRKIISQKLGEAQFEAKYKMFEDNACQNHGCTPEQAQKIWRFLATS 765

Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
           A Y FN +H  +Y++++Y   W+K H+P  F AA +    D  EK+ K  +DA + NI I
Sbjct: 766 ATYSFNIAHCISYSMLAYWQMWIKQHHPTAFYAAQLRKVND--EKLYKLMRDAVRHNISI 823

Query: 817 MPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFD-------SLEDF 868
           +PPS+N     +    +  +      I GVG  T+  I+E    K          S  D 
Sbjct: 824 LPPSINESMASWSAPMEGVVRAGFLQIPGVGPKTSEVIVEWRNQKIRKGQKAIAASAPDL 883

Query: 869 C--SRVDSKKLNRRVLESL-VFAGALDCFGYSR-MQLLQSLDNIQKYAQ 913
                ++ K +  + +E +  F  A D FG +R   L +SL  I K   
Sbjct: 884 MWSDLLEVKGIGPKSIEKIVAFCEAEDPFGLNRVQDLFKSLRRIIKPGN 932


>gi|322389221|ref|ZP_08062782.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            parasanguinis ATCC 903]
 gi|321144126|gb|EFX39543.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            parasanguinis ATCC 903]
          Length = 1033

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 286/1025 (27%), Positives = 491/1025 (47%), Gaps = 105/1025 (10%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   S Y+ +E  +++ + +    +    A+ I D +NL+ A EF +   A  + P++
Sbjct: 3    AQLDTKSVYTFMESLVTIKDYVQVAKSMGYGALGIMDIDNLYGAYEFIEACQAQKLNPLV 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G ++ +++ +                       + +GYQ L+++ +   +          
Sbjct: 63   GLEIGLEVDNETIPLRMM-------------ALSTKGYQNLMKMSTVKMMGKS------- 102

Query: 132  CLSWLQEIGTEGLIMLTGGS--SGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
                + +  TEG+ ++      SG +                           ++ +   
Sbjct: 103  NWEDV-KHLTEGVAVIVPAPFASGDLPLGL---------------------DYFIGVFAD 140

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                                P++  +   F   ED EA  +L A+  +  +++      T
Sbjct: 141  TPV------------QEFSHPVLPLHTVRFFEAEDVEAMQMLAAIKDNQSLTETGPIDPT 188

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                   +          P+A+ N  ++ +   + +     +          + QK    
Sbjct: 189  TVLKT-PQDLKNDFAERFPQAITNLEKLVQGIQYDIDTQLKLPR-------FNPQKPAVE 240

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            ELR  A AG         + K   +  Y++RL++EL++I +M F  YFLIV D +++ + 
Sbjct: 241  ELRELAQAG--------LLRKNLTSPVYQERLEYELDIIHQMGFDDYFLIVWDLLRFGRS 292

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                +G GRGS  GS+ AYAL IT IDP+  +LLFERFLN +R +MPD DID     R E
Sbjct: 293  QGYYMGMGRGSAVGSLVAYALGITGIDPVEKNLLFERFLNVERYTMPDIDIDIPDIYRPE 352

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
             IRYV+++YG    AQI+TF +  AK A+RDV +   +P  ++  + K I          
Sbjct: 353  FIRYVRDRYGSYHAAQIVTFSTFGAKQAIRDVFKRFGVPEYELTSITKRIGF---RDTLT 409

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             A   +  FR+   +    +R  EI++++EG  R  S HAAG+V+ D+ L+  +P+    
Sbjct: 410  TAYEQNLAFRQVIHSRAEFERGFEIAKRIEGQPRQTSIHAAGVVMSDQDLTDHIPLKYG- 468

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHET 608
              D+ VTQ++   +E  GL+K DFLGL+ LT +QK  +    +   ++ +  I  +D ET
Sbjct: 469  -EDMFVTQYDAHAVEANGLLKMDFLGLRNLTFVQKMKEAVYEKYQEEIVIEAIDLEDPET 527

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L T   T GIFQ E +G  + L  ++P+  E+++A  SL RPG  D I  +  RK+G+
Sbjct: 528  LALFTAGDTKGIFQFEQAGAIRLLRRVRPNHFEEVVATTSLNRPGASDYIDNFVKRKHGQ 587

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            EK+  + P I+ +L+ T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGKK   EM K 
Sbjct: 588  EKVEILDPAIEAILRPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGKKNVAEMHKM 647

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            ++ F++GA K G ++  A  +F ++ KFA YGFN+SHA AY+ +++Q A+ K HYP  F 
Sbjct: 648  EDDFVAGALKLGHTEEKAKEVFAIMEKFAGYGFNRSHAYAYSALAFQMAYFKVHYPDVFF 707

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
               +            +  DA QF+ ++ P S+NT     K  D +IY  +  IKG+   
Sbjct: 708  DVMLN------YSSSDYLTDALQFDFKVAPLSINTIPYRDKFQDRKIYLGMKNIKGLPRD 761

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             A  I++   ++PF+S+EDF  R+ ++     +L  LV  G  D F  +R ++L +L N+
Sbjct: 762  LAYWIID---NRPFESVEDFILRLPNQYHKLPLLTPLVELGLFDIFEKNRRKVLHNLPNL 818

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +A  +         ++FA    ++++          + + ++E E+ ++G   S HPL
Sbjct: 819  FVFADEL--------GSLFADSNYSWTEA------EDFSQAEKYEKEEAIIGVGLSTHPL 864

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
                       I+   + +    G   R+   V + +  +T+ G  + ++  S+  K+ +
Sbjct: 865  IAIGQT-SPYEIQPISQLIQ---GEQARILIEVQAIRTIRTKSGDLMAFLQVSDTKKKLD 920

Query: 1029 ANFFP 1033
               FP
Sbjct: 921  VTLFP 925


>gi|223932493|ref|ZP_03624494.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591]
 gi|330833069|ref|YP_004401894.1| DNA polymerase III subunit alpha [Streptococcus suis ST3]
 gi|223898764|gb|EEF65124.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591]
 gi|329307292|gb|AEB81708.1| DNA polymerase III alpha subunit [Streptococcus suis ST3]
          Length = 1036

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 283/1025 (27%), Positives = 492/1025 (48%), Gaps = 102/1025 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + Y+ ++  +++ N + +       A+ I D N+L++A  F +     G+QPII
Sbjct: 3    AQLDTKTVYTFMDSMVTIENYVGRAKELGYHALGIMDKNSLYAAYSFMESCNKMGLQPII 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+LD  +Q+  +                L+  T  GY+ L+++ +   ++ Q       
Sbjct: 63   GCELDWKLQEGEQDVTTQ-----------LIALTTRGYRNLLKIST-AKMIGQD------ 104

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                +++   +  I +       I+                      G   Y+ +     
Sbjct: 105  DFETIRQYLVD--IAVVVPYFSGIEHLEL------------------GVNYYIGVTVDTP 144

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
               ++++            ++  +   F  EE  E+  VL A+  +  +           
Sbjct: 145  VQDFKQA------------ILPIHTVRFFEEEQLESLQVLHAIRDNIPL--------NQV 184

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
              + +R +++S  S          +       ++   +  L   ++    +  +    EL
Sbjct: 185  VDIDSRQKLLSADSLTNLFSNRFPQAVDNLRDLVAGISYQLNTDLKLPRFNRDRPAVEEL 244

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
              ++  GLE +        G     Y++RL+ EL++I +M F  YFLIV D +++ +   
Sbjct: 245  YERSYQGLEEK--------GLTNSLYKERLEKELSIIHQMGFDDYFLIVWDLLRFGRSQG 296

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R SMPD DID     R + I
Sbjct: 297  YYMGMGRGSAVGSLVAYALNITGIDPVKHNLLFERFLNAERYSMPDIDIDIPDIHRADFI 356

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG    AQI+T+ +  AK A+RDV +    P  ++  + K I    +      A
Sbjct: 357  RYVRDRYGSTHAAQIVTYSTFGAKQAIRDVFKRFGTPEYELSNITKKISFRDSLT---SA 413

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               ++ FR+   +     +   I+Q++EG  R  S HAAGIV+ D  L+  +P+      
Sbjct: 414  YQRNAAFRQIINSKIEYQKAFAIAQQIEGQPRQTSIHAAGIVMSDEDLTDTIPLKIG--D 471

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYH 610
            D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + + +R  + +D++ I  +D +T  
Sbjct: 472  DMLVTQYDAHAVEANGLLKMDFLGLRNLTFVQKMAEGVRERYQQEIDIAKIDLEDKKTLE 531

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E  G    L  ++P   EDI+A  SL RPG  D    +  RK+G+E 
Sbjct: 532  LFAAGRTKGIFQFEQPGAISLLRRVKPGRFEDIVATTSLNRPGASDYSDNFVKRKHGQET 591

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM   + 
Sbjct: 592  VDLLDPTIAPILQPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNAQEMQVMEA 651

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ GA KNG ++  A  IF ++AKFA YGFN+SHA AY+ +++Q A+ K+HY   F   
Sbjct: 652  EFLQGALKNGHAEENAREIFGMVAKFAGYGFNRSHAYAYSALAFQMAYFKSHYTDVFFDV 711

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            + +DA QF+ ++   ++N      K   +++Y  L  +KG+    A
Sbjct: 712  MLNHSSS------AYIEDAMQFDFEVARLTINNIPYHDKFDKSKVYLGLKTLKGLPKDLA 765

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I++     P+ S+EDF  R+      + +L  L+  G  D F  +R +++++LDN+  
Sbjct: 766  LWILDHR---PYKSVEDFILRLPDNFKKKDLLIPLIQIGLFDDFVANRKKIIENLDNLFV 822

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL-D 969
            +A+ +           FA E  +++D          + S +F  EQ +LG   S HPL +
Sbjct: 823  FAEAI--------GTFFAEESYSWTD------VEDYSDSEKFMLEQELLGVGISPHPLVN 868

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYE 1028
            + +        + + +      GN   +   + + +  +T+K G ++ ++  ++  +  +
Sbjct: 869  ICRE-----SKRSFTDLADLAVGNRATVLVQIQAIRLIRTKKTGEQMAFLRVTDTKRTLD 923

Query: 1029 ANFFP 1033
               FP
Sbjct: 924  VTLFP 928


>gi|302023511|ref|ZP_07248722.1| DNA polymerase III DnaE [Streptococcus suis 05HAS68]
          Length = 1036

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 283/1025 (27%), Positives = 492/1025 (48%), Gaps = 102/1025 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
              L   + Y+ ++  +++ N + +       A+ I D N+L++A  F +     G+QPII
Sbjct: 3    AQLDTKTVYTFMDSMVTIENYVGRAKELGYHALGIMDKNSLYAAYSFMESCNKMGLQPII 62

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            GC+LD  +Q+  +                L+  T  GY+ L+++ +   ++ Q       
Sbjct: 63   GCELDWKLQEGEQDVTTQ-----------LIALTTRGYRNLLKIST-AKMIGQD------ 104

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                +++   +  I +       I+                      G   Y+ +     
Sbjct: 105  DFETIRQYLVD--IAVVVPYFSGIEHLEL------------------GVNYYIGVTVDTP 144

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
               ++++            ++  +   F  EE  E+  VL A+  +  +           
Sbjct: 145  VQDFKQA------------ILPIHTVRFFEEEQLESLQVLHAIRDNIPL--------NQV 184

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
              + +R +++S  S          +       ++   +  L   ++    +  +    EL
Sbjct: 185  VDIDSRQKLLSADSLTNLFSNRFPQAVDNLRDLVAGISYQLNTDLKLPRFNRDRPAVEEL 244

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
              ++  GLE +        G     Y++RL+ EL++I +M F  YFLIV D +++ +   
Sbjct: 245  YERSYQGLEEK--------GLTNSLYKERLEKELSIIHQMGFDDYFLIVWDLLRFGRSQG 296

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R SMPD DID     R + I
Sbjct: 297  YYMGMGRGSAVGSLVAYALNITGIDPVKHNLLFERFLNAERYSMPDIDIDIPDIHRADFI 356

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            RYV+++YG    AQI+T+ +  AK A+RDV +    P  ++  + K I    +      A
Sbjct: 357  RYVRDRYGSTHAAQIVTYSTFGAKQAIRDVFKRFGTPEYELSNITKKISFRDSLT---SA 413

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
               ++ FR+   +     +   I+Q++EG  R  S HAAGIV+ D  L+  +P+      
Sbjct: 414  YQRNAAFRQIINSKIEYQKAFAIAQQIEGQPRQTSIHAAGIVMSDEDLTDTIPLKIG--D 471

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYH 610
            D+ VTQ++   +E  GL+K DFLGL+ LT +QK  + + +R  + +D++ I  +D +T  
Sbjct: 472  DMLVTQYDAHAVEANGLLKMDFLGLRNLTFVQKMAEGVRERYQQEIDIAKIDLEDKKTLE 531

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L     T GIFQ E  G    L  ++P   EDI+A  SL RPG  D    +  RK+G+E 
Sbjct: 532  LFAAGRTKGIFQFEQPGAISLLRRVKPGRFEDIVATTSLNRPGASDYSDNFVKRKHGQET 591

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            +  + P I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM   + 
Sbjct: 592  VDLLDPTIAPILQPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNAQEMQVMEA 651

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ GA KNG ++  A  IF ++AKFA YGFN+SHA AY+ +++Q A+ K+HY   F   
Sbjct: 652  EFLQGALKNGHAEENAREIFGMVAKFAGYGFNRSHAYAYSALAFQMAYFKSHYTDVFFDV 711

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             +            + +DA QF+ ++   ++N      K   +++Y  L  +KG+    A
Sbjct: 712  MLNHSSG------AYIEDAMQFDFEVARLTINNIPYHDKFDKSKVYLGLKTLKGLPKDLA 765

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              I++     P+ S+EDF  R+      + +L  L+  G  D F  +R +++++LDN+  
Sbjct: 766  LWILDHR---PYKSVEDFILRLPDNFKKKDLLIPLIQIGLFDDFVANRKKIIENLDNLFV 822

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL-D 969
            +A+ +           FA E  +++D          + S +F  EQ +LG   S HPL +
Sbjct: 823  FAEAI--------GTFFAEESYSWTD------VEDYSDSEKFMLEQELLGVGISPHPLVN 868

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYE 1028
            + +        + + +      GN   +   + + +  +T+K G ++ ++  ++  +  +
Sbjct: 869  ICRE-----SKRSFTDLADLAVGNRATVLVQIQAIRLIRTKKTGEQMAFLRVTDTKRTLD 923

Query: 1029 ANFFP 1033
               FP
Sbjct: 924  VTLFP 928


>gi|109522633|ref|YP_655445.1| gp66 [Mycobacterium phage PLot]
 gi|88910740|gb|ABD58665.1| gp66 [Mycobacterium phage PLot]
          Length = 1066

 Score =  429 bits (1103), Expect = e-117,   Method: Composition-based stats.
 Identities = 263/949 (27%), Positives = 418/949 (44%), Gaps = 65/949 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV L  HS++S  +G   +   + ++A     A+A+T+  NL S  +  +     GI+PI
Sbjct: 3   FVSLHTHSTFSYGDGYGPVKEHVQRVAELGMGALALTEHGNLSSHAQLEKACNEIGIKPI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            GC+L +      +                +L     G Q L  +V++ +      +   
Sbjct: 63  FGCELYVAPPGENRK-----------CHQTVLAMNEVGLQNLNRIVTKSW--KNFYRWPT 109

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-------------SSQVAEKRLLTFKKL 177
                L+E   EGLI+L+G +   +                        A   +  ++++
Sbjct: 110 TSWKMLEE-HHEGLIVLSGCADSVLSCTLLGGKSYGDKRLTASKRDITRAAGLIGRYQEV 168

Query: 178 FGDRLYVNLQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
           FGDR Y+  QR  G DR       + +L+      LV T +  +    D E   +L A  
Sbjct: 169 FGDRYYLETQRFPGLDRTCALNPLLARLSELTGARLVGTADVHYPRGSDNEMQKILHAAH 228

Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD----------LPEALENTVEIARRCSFIL 285
             + V +        D  L        I+ D            EA+  +  IA RC+ IL
Sbjct: 229 RGSTV-EATEASWEYDILLTYPESDREIYMDLVGTGLTKAQAREAVLESGRIAERCNVIL 287

Query: 286 QVHAPILPRFIEKECDDIQ-KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
             + PI      KE D  Q     NEL  K +                + Q Y+ R++ E
Sbjct: 288 PKNQPIRFPKPTKEVDGTQVPMSANELIRKWLNEGWHFRMATNPNMRKNRQAYKARVEHE 347

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL- 403
           L ++    F  YFL+++D ++WAK + IPVGP RGS A S+  Y L IT++DP+ F  + 
Sbjct: 348 LGMMEEKDFLDYFLVLSDAVRWAKDHKIPVGPARGSAAASLVCYLLRITEVDPMLFPHML 407

Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
           FERF++P R  +PD D+DF  DRR EV RY++ KYG +RV  I  F   + K ++ DV R
Sbjct: 408 FERFIDPTRTELPDVDLDFSDDRRIEVKRYLEEKYGADRVGNIGNFTRYRGKNSIDDVAR 467

Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSL-QAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
              +P  + + +  LI         +  ++ D         A       L  + +LEG Y
Sbjct: 468 VYNIPVWETEIVKNLIIERSGGDSRISDSLEDTFNMFPKAAAVLERHPELANAIRLEGNY 527

Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLT 580
           R    HAAGIVI + P++    +Y    +     V  ++ K  E  G++K DFLGL T+ 
Sbjct: 528 RGMGVHAAGIVISNTPITDTCAVYERESAGKTTQVIAYDKKDGEYVGMLKADFLGLSTMG 587

Query: 581 LLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           ++  +LD +       DL  IP DD +           GIFQ E    R     + PD  
Sbjct: 588 MIGIALDMIG--MDLEDLYRIPLDDQKVLEAFRRGDVTGIFQFEGRATRIVCSDVVPDHF 645

Query: 641 EDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
           + +  + +L RPGP+ + +   Y   K+G++     HP++D +   T G ++YQEQV+  
Sbjct: 646 QHLADINALSRPGPLFSGMTAAYCEVKHGRKTPERYHPILDNLTDWTYGQVVYQEQVLST 705

Query: 699 AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG--ASKNGISKTIAVNIFELLAKF 756
            + L G+ +SE   +R+ + +K+ E   + K +         +G +   A  I+  LA  
Sbjct: 706 IRELGGFPMSEVHSIRKIISQKLGEAQFEAKYKMFEDNACQNHGCTPEQAQKIWRFLATS 765

Query: 757 ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
           A Y FN +H  +Y++++Y   W+K H+P  F AA +    D  EK+ K  +DA + NI I
Sbjct: 766 ATYSFNIAHCISYSMLAYWQMWIKQHHPTAFYAAQLRKVND--EKLYKLMRDAVRHNISI 823

Query: 817 MPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASADKPFD-------SLEDF 868
           +PPS+N     +    +  +      I GVG  T+  I+E    K          S  D 
Sbjct: 824 LPPSINESMASWSAPMEGVVRAGFLQIPGVGPKTSEVIVEWRNQKIRKGQKAIAASASDL 883

Query: 869 C--SRVDSKKLNRRVLESL-VFAGALDCFGYSR-MQLLQSLDNIQKYAQ 913
                ++ K +  + +E +  F  A D FG +R   L +SL  I K   
Sbjct: 884 MWSDLLEVKGIGPKSIEKIVAFCEAEDPFGLNRVQDLFKSLRRIIKPGN 932


>gi|293605789|ref|ZP_06688163.1| error-prone DNA polymerase [Achromobacter piechaudii ATCC 43553]
 gi|292815838|gb|EFF74945.1| error-prone DNA polymerase [Achromobacter piechaudii ATCC 43553]
          Length = 851

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 231/838 (27%), Positives = 373/838 (44%), Gaps = 51/838 (6%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  LQ  S++S L+GA     ++ + A     A+A+TD  +L   +    +A    + 
Sbjct: 19  PGYAELQCQSNFSFLQGASHPEELVARAAELGYAALALTDECSLAGVVRAHTEAKTQKLP 78

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            +IG    +              P      + LL  T EGY  L EL++        K  
Sbjct: 79  LLIGATFQLR-----------AAPDAAPLGLTLLAQTREGYGNLSELITLARTR-APKGE 126

Query: 129 VRICLSWLQE----IGT-----EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            R+    L              E L +LT               +    ++     ++F 
Sbjct: 127 YRLAPDDLTHPPKGYAHLAQVPECLAILTPAYGT---------DADRLAEQARWLARVFP 177

Query: 180 DRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
           +R +V L   +R  D    + V   A   +LP+VA              HD L  +    
Sbjct: 178 NRAWVGLNLLYRSRDDQHRAAVEHAARQAQLPIVAVGQVQMHVRSRKPLHDTLTGIRTRQ 237

Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
            V  +    ++ +     R+ M       PEAL  T+ +ARRC+F L       P  I  
Sbjct: 238 PV-ARCGYELSENAEQHLRTRMRLANLYPPEALAQTLVVARRCAFSLDELHYEYPDEIVP 296

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                       LR + +AG   R   G        ++   +++ EL++I  +++  YFL
Sbjct: 297 AG----HTPATYLRQETLAGAARRFPAGV------PENVAGQIEKELDLIGELRYEAYFL 346

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
            V D +Q+A+   I    GRGS A S   Y L IT +DP R + LFERF++ +R   PD 
Sbjct: 347 TVYDIVQYARSQGIL-CQGRGSAANSAVCYCLGITAVDPARGNNLFERFISKERNEPPDI 405

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D+DF   RR+EVI+Y+ +KYG +R A      S + ++ LRD G AL +    +D + + 
Sbjct: 406 DVDFEHQRREEVIQYIYDKYGRDRAALTAVVISYRPRSVLRDTGSALGVDLGVIDAVARA 465

Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                     L+ +                 +   ++Q + G  RH S H  G VI    
Sbjct: 466 HQWWDGKKEMLRTLGAC----GLDPESRVARQWASLAQTMMGFPRHLSQHPGGFVISRGK 521

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVD 597
           LS+LVP+      D  V Q++   ++   L+K D L L  L+ L+++L+    +RG  + 
Sbjct: 522 LSRLVPIENAAMQDRSVVQWDKDDLDALKLLKVDVLALGMLSALRRTLELAGERRGQPLA 581

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           L  IP  D  TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI  
Sbjct: 582 LQDIPEGDTATYDMICDADTVGVFQIESRAQMTMLPRLRPRKYYDLVVQVAIVRPGPIQG 641

Query: 658 IVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            +V+    R+ GKE        +  +L  T GV I+QEQVMQIA + +G++  EAD LRR
Sbjct: 642 GMVHPYLRRRQGKEDETYPSEKVRGVLSRTMGVPIFQEQVMQIAVVAAGFTPGEADQLRR 701

Query: 716 AMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           +M     K  +DK + + + G   +G     A  +F  +  F +YGF +SHAA++A+++Y
Sbjct: 702 SMAAWKRKGGVDKFRIKLVGGLLAHGYKLEFAEALFRQVEGFGEYGFPESHAASFALLAY 761

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            ++W+K H P  FLAA +  +        +  QDAR+  + ++P  V     +  + +
Sbjct: 762 FSSWLKRHEPEAFLAALLNSQPMGFYAPAQLVQDARRHGVCVLPADVTVSGWESALEN 819


>gi|167471052|ref|ZP_02335756.1| DNA polymerase III, alpha subunit [Yersinia pestis FV-1]
          Length = 743

 Score =  428 bits (1101), Expect = e-117,   Method: Composition-based stats.
 Identities = 238/602 (39%), Positives = 346/602 (57%), Gaps = 17/602 (2%)

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             TFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +     A + +  E   AD 
Sbjct: 14   NTFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPLDPGMTLEKA-FAAEPQLAEIYEADE 72

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
             V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D   + PVTQF+   +E A
Sbjct: 73   EVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVTQFDKNDVEYA 132

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            GL+KFDFLGL+TLT++  +L+ +  R        +D++ IP +D +++ +L    T  +F
Sbjct: 133  GLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDIASIPLEDKKSFDMLQRSETTAVF 192

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YNNRKNGKEKIVSI 674
            QLES GM+  ++ ++PDC ED+IALV+L+RPGP+ + +V       +         I   
Sbjct: 193  QLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREAISYPDIEWQ 252

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            H  + P+L+ T G+I+YQEQVMQIAQ+LSGYSL  AD+LRRAMGKK   EM KQ+  F  
Sbjct: 253  HESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLRRAMGKKNPAEMAKQRSVFED 312

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            GA   GI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+AA MT 
Sbjct: 313  GAKNQGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTA 372

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHI 853
            +MDN +K+     +  +  ++I+PP +N+    F V  D  I Y + AIKGVG      I
Sbjct: 373  DMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAI 432

Query: 854  MEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            +EA  +   F  L D C+RVD+KKLN+R+LE L+ +GA D  G  R  L+ SL +  K A
Sbjct: 433  LEARKEGGYFKELFDLCARVDTKKLNKRILEKLIMSGAFDRLGPHRAALMSSLGDALKAA 492

Query: 913  QWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
                K       ++F          + +          V  + E+  LG Y +GHP+  Y
Sbjct: 493  DQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQVVLDGERETLGLYLTGHPITQY 552

Query: 972  KPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
               + +  G    ++   T RG       +V++ +   T++G+RIG  T  + +   E  
Sbjct: 553  LKEIERYAGGMRLKDMHPTDRGKMTTAVGLVIAARVMVTKRGNRIGICTLDDRSGRLEVM 612

Query: 1031 FF 1032
             F
Sbjct: 613  LF 614


>gi|238028690|ref|YP_002912921.1| error-prone DNA polymerase [Burkholderia glumae BGR1]
 gi|237877884|gb|ACR30217.1| DNA polymerase III, alpha subunit superfamily protein [Burkholderia
           glumae BGR1]
          Length = 1080

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 243/902 (26%), Positives = 395/902 (43%), Gaps = 61/902 (6%)

Query: 4   YLEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            +  + P++  L   +++S L GA S + ++ +  A     IA+TD  +L  A       
Sbjct: 2   AMPSALPAYAELFCRTNFSFLCGASSADELVARAHALGYRGIAVTDACSLAGAPRMHVAV 61

Query: 63  CAAG--------------------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
            A                       +  +G   ++  +        G  P P    +VLL
Sbjct: 62  KAKNAELEAAWKAAGAPPADRPEPFRLAVGAYFELTPE----RVAPGGDPGPGGFGLVLL 117

Query: 103 VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFF 160
               EGY  L EL+S    +   K S  +    L     E   L  +    +  +     
Sbjct: 118 ACNREGYGNLSELISW-RRMAAPKGSYTLTPRMLAAPPPEFAHLRGMPDCFAILVPAY-- 174

Query: 161 FNSSQVAEKRLLTFKKLFGDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLF 219
              + V + +L      FG+R  + L Q  R  D      +        +PLVA  +   
Sbjct: 175 PVRADVLDAQLAWCAAQFGERARLGLVQLGRSLDGLYRETIEAAGVQRAMPLVALGDVTM 234

Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
                    D++ A+     V  +    +  +     R           EA+  T  +  
Sbjct: 235 HLRSRKPLQDLMTAIRIGRPV-GECGYALAANAEQHLRGLGRIARLFPQEAIAETCRMLD 293

Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
            C F +       P  I            + L  +   G   R  +G  A      +   
Sbjct: 294 ACRFDMGTLKYEYPHEIVPAGM----TPTDYLAQETWRGARKRFPEGLPA------EVEA 343

Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
           ++  EL +IA M++  +FL V D +++A++ +I    GRGS A SV  Y L +T +DP R
Sbjct: 344 QIRHELALIAEMEYEPFFLTVYDIVKFAREQDIL-CQGRGSAANSVVCYCLGVTAVDPKR 402

Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            ++LFERF++ +R   PD D+DF  +RR+EVI+Y+  KYG +R A      + + + ALR
Sbjct: 403 STMLFERFISRERGEPPDIDVDFEHERREEVIQYIYAKYGKDRTALAAAVSTYRPRGALR 462

Query: 460 DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
           + G+AL +    V+R+ K           L   A            P +    E++ +L 
Sbjct: 463 ETGKALGVDPMLVERVAKGHRWFDGSADLLARFASV----GLDPEVPLIRAWAELASRLL 518

Query: 520 GLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
           G  RH S H+ G VI    L++LVP+     +   V Q++   +E  GL+K D L L  L
Sbjct: 519 GFPRHLSQHSGGFVISRGKLTRLVPIENAAMAGRRVIQWDKDDLEALGLMKVDVLALGML 578

Query: 580 TLLQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
           + L ++ DF  A RG ++ L+ +   D  TY +++   T+G+FQ+ES      L  ++P 
Sbjct: 579 SALHRAFDFVEAWRGTRMRLADLEEGDEATYAMISRADTVGVFQIESRAQMSMLPRLKPA 638

Query: 639 CIEDIIALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
           C  D++  V+L RPGPI    +  Y  R+ G E +      + P L+ T+GV I+QEQVM
Sbjct: 639 CYYDLVIEVALVRPGPIQGGAVHPYLRRRQGLEPVEYPKEDLKPALERTKGVPIFQEQVM 698

Query: 697 QIAQLLSGYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
           QIA + +G++  EAD LRRAM     K ++ K +ER + G       +  A  IFE +  
Sbjct: 699 QIAIIAAGFTPGEADELRRAMAAWKRKGDLGKYRERIVEGMLARDYPERFADQIFEQIKG 758

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
           F +YGF +SHAA++A++ Y ++W+K H P  FLAA +  +        +  QDA++  + 
Sbjct: 759 FGEYGFPESHAASFAILVYASSWLKCHEPAIFLAALLNSQPMGFYPPAQLVQDAKRHGVT 818

Query: 816 IMPPSVNTPCVDFKVG----------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
           + P  V     D  +              +   +A + G+G   A  I  A A +PF+S+
Sbjct: 819 VRPIDVTASGWDASLEALPGEPPPAGRPAVRLGMALVAGLGREAALRIEAARAARPFESV 878

Query: 866 ED 867
           +D
Sbjct: 879 DD 880


>gi|317472885|ref|ZP_07932191.1| PHP domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316899605|gb|EFV21613.1| PHP domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 475

 Score =  426 bits (1095), Expect = e-116,   Method: Composition-based stats.
 Identities = 174/482 (36%), Positives = 271/482 (56%), Gaps = 18/482 (3%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SF HL VH+ YSLL+G+  +  ++         +IAITD   ++  ++F + A A GI+P
Sbjct: 2   SFTHLHVHTEYSLLDGSSKIKELVHHTKELGMDSIAITDHGVMYGVIDFYKAAKAEGIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I+GC++ +      +   + +        +VLL     GY  L+++VSR +  +      
Sbjct: 62  ILGCEIYVTPGSRFEK--EARQGSSNYFHLVLLAENDRGYHNLMKIVSRGFT-EGFYYKP 118

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
           R+    L+   +EGLI L+    G I         + A++  L F++++G    ++ LQ 
Sbjct: 119 RVDYEVLERY-SEGLIALSACLGGEIPTYIREGDYEKAKETALRFERIYGKGNFFLELQD 177

Query: 189 HRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H   ++    S +++++    + LVATN+  +   ED E HD+L+ +     V+ +DR R
Sbjct: 178 HGISEQTTVNSALIKMSKETGIELVATNDIHYTFAEDVEPHDILLCIQTGKKVADEDRMR 237

Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                +YLK+  EM  +F    +A+ENT +IA RC+  +      +P+F   E D     
Sbjct: 238 YEGGQYYLKSPEEMERLFPYARQAVENTGKIAERCNVEIIFGEQKVPKFDVPEGD----T 293

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + LR     G+               ++ R+RL+FEL  I  M +  YFLIV DFI +
Sbjct: 294 STSYLRKLCEEGICR-------RYDDVTEELRERLEFELKTIENMGYVDYFLIVWDFIHY 346

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           AK++ I VGPGRGS AGS+ +Y L ITDI+P+++ LLFERFLNP+R+SMPD DIDFC +R
Sbjct: 347 AKEHGIAVGPGRGSAAGSIVSYCLEITDIEPIKYQLLFERFLNPERVSMPDIDIDFCYER 406

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R EVI YV  KYG ++V QIITFG++ A+A +RDVGR L +PY++VD + K++PN+    
Sbjct: 407 RQEVIDYVVEKYGKDKVVQIITFGTMAARAVIRDVGRVLDIPYAKVDGIAKMVPNELNIT 466

Query: 487 VS 488
           + 
Sbjct: 467 IE 468


>gi|226357664|ref|YP_002787404.1| DNA polymerase III alpha subunit; Error-prone DNA polymerase dnaE2
            [Deinococcus deserti VCD115]
 gi|226319655|gb|ACO47650.1| putative DNA polymerase III alpha subunit; putative Error-prone DNA
            polymerase dnaE2 [Deinococcus deserti VCD115]
          Length = 1058

 Score =  426 bits (1094), Expect = e-116,   Method: Composition-based stats.
 Identities = 276/1044 (26%), Positives = 443/1044 (42%), Gaps = 78/1044 (7%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG- 72
            L   S +S     +S   ++ + A     A+ + D  ++  A+E             +G 
Sbjct: 17   LACQSYFSEGRSTVSPRRLVQRAADAGYSAVGLADWCSVAGAVE-------------LGE 63

Query: 73   --------CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
                      + + +        +   P+   P +VLL     GY  L  L++ +    Q
Sbjct: 64   AARAAGLAALVGVTLPVLFPAPPRSPAPYEPYP-VVLLARDRPGYAVLCRLITDV----Q 118

Query: 125  GKQSVRICLSWLQEIGT---EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
            G+    + LS LQE G    + L+ LTGG +G             A   L T + +F   
Sbjct: 119  GQYPGGLPLSLLQETGRQFQDHLLCLTGGRTGFPTVLGEQREVARAAFYLRTLRGIFPFS 178

Query: 182  LYVNLQRHR--GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            LYV L  H     +R R   +  LA   ELP+VA          DY   D L        
Sbjct: 179  LYVQLY-HGAAPNERRRLEYLRGLARDLELPVVAAPEVCMADAADYCLLDALTCARLGID 237

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            V      R   D       E        P+AL N   IA  C+F L       P    + 
Sbjct: 238  VQTPHPDRPRNDARHVGTPEEWGHLLPFPDALLNAERIADWCTFELLPERLRSPEPRLRP 297

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                Q+  E            V  A G+       +   +RL  EL  +A +  +G+FL 
Sbjct: 298  FQTAQEVLEE----------RVFAAVGSRYSPGAREAALRRLKDELATVAHLDLAGFFLT 347

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
             A+   + +++ I    GRGS AGSV  Y L IT  DP+  +LLFERFL+  R SMPD D
Sbjct: 348  AAEVTDYCREHGILAA-GRGSAAGSVLCYLLGITLSDPIEHNLLFERFLHTGRTSMPDVD 406

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVA--QIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            ID    RRD+V+R+V+ ++G        +    + + K+A++D+GRAL MP    DRL +
Sbjct: 407  IDIASARRDQVLRWVEERWGLSGAGEAMVANRITYRMKSAIQDLGRALGMPPDLRDRLSR 466

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA-STHAAGIVIGD 536
             +  D  H    +A   +  F E     P  + LL + +++E  +    + H+ G+V+  
Sbjct: 467  ALGRDYGHLRPHRAREAEVAFTEVLGDAPVKEALLCLLERIEPGFVRHLAPHSGGVVLSS 526

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
             PL+   P+ R     + +  F+   +EK GLIK D LGL+ L  L+++ + + +   + 
Sbjct: 527  EPLTFYSPLTRSS-GGIRMLTFDKDDVEKLGLIKLDLLGLRMLAALERAREEVLRLTNEW 585

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
                   DD   +  +++  T+G+FQ+ES    Q    +QP  +  +   V+L RPGPI 
Sbjct: 586  VPYGELPDDPRVWAEISSGDTMGLFQIESPAQVQMTARLQPKTMTQLAHQVALVRPGPIQ 645

Query: 657  --NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
               +  Y  R  G+E +      +  +L+ T G +++QEQ+++IA   +GY    AD  R
Sbjct: 646  SGTVHPYVRRARGEEPVPERPEPLQSILRATHGTLMFQEQILRIAVHYAGYDWPHADRFR 705

Query: 715  RAMGK--KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
              + K     E  + +++     A   G     A  +FE+ A F  YGF +SHA A+A  
Sbjct: 706  SRLSKVEDGHELAELKEQFLSGAALTCGAFPWEAEEVFEMCAMFRGYGFAESHAHAFAQH 765

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            SY +A+M+ HYP  + AA +T E   +       Q+ R+  + ++P  +N   + ++   
Sbjct: 766  SYASAYMRHHYPAAYFAAFLT-EAPGMWPANTIAQECRRRGVTLLPVCINRSGLSYRAES 824

Query: 833  -NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               I   L A++G+    AR I+        F +LED   R+D   L+R   E LV AG 
Sbjct: 825  LRTIRVPLTAVEGISEAKAREIVHERLIGGKFSTLEDAYDRID---LSRDRFEKLVLAGG 881

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            L     SR + L  L  +          R      + A         I   +    +S+ 
Sbjct: 882  LTSIEPSRRKGLFGLTLL-------ANARKAGTRPLLA-------PGIEPPELPEMSSTE 927

Query: 951  RFENEQRVLGFYFSG-HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                + R  G   +G HPLD ++  LR +G +          G+   +A ++V++Q+  T
Sbjct: 928  YLALDLRTKGLSETGRHPLDAHRARLRDLGCQA---LGGLNHGDTAWVAGVIVARQRPPT 984

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
             KG    +    +     +A   P
Sbjct: 985  AKG--FAFYVLEDRTARLQAIISP 1006


>gi|239917574|ref|YP_002957132.1| DNA-directed DNA polymerase III PolC [Micrococcus luteus NCTC 2665]
 gi|239838781|gb|ACS30578.1| DNA-directed DNA polymerase III PolC [Micrococcus luteus NCTC 2665]
          Length = 1232

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 264/1120 (23%), Positives = 449/1120 (40%), Gaps = 143/1120 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAI----------------TDTNNLFS 54
            F HL V S++S   G                                     TD + L+ 
Sbjct: 14   FAHLHVASAFSAHYGVSWPE----------------DLVAAAAAADMDLLACTDRDGLYG 57

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA---EGYQR 111
              +        GI PI+G  L +   ++                +V+L        GY+ 
Sbjct: 58   MAKHVGACLRHGITPIVGVDLAVRWSED-----------EDAGRVVVLARGGCHGSGYRS 106

Query: 112  LIELVSRMYLL---DQGKQSV-------------RICLSWLQEIGTEG-----LIMLTGG 150
            L ELVS  +          S              R+          +      L +L G 
Sbjct: 107  LCELVSAAHARTTGGAAGGSPWASVAELAAAAAGRVP----TAANRDNPPTPELFVLLG- 161

Query: 151  SSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH-----RGYDRYRESQVVQLA 204
                + R             L  +K        + ++  H     R  D     + ++ A
Sbjct: 162  PDSDVGRHLARRRYAAGLAALRRWKAALPAGSPHADVVTHLSAPGRRLDTGHAVKTLRAA 221

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
                +P V TN   + + +     DVL AV   + +      +     +LK+ + M  I 
Sbjct: 222  RQARIPAVLTNAVRYAAPDGAATADVLDAVRALSSLDALHDLQPNGQGWLKSTAAMHRIA 281

Query: 265  SDLPEALENTVEIARRCSFIL---------QVHAPILPRFIEKECDDIQKEEENELRNKA 315
             ++  A ++        +  L               +PR  E     I    E+ LR + 
Sbjct: 282  HEVASAADDRPAPLLEATRRLAEACALDPETDLGWGVPRVPEAAVIGIDGPPEHVLRERT 341

Query: 316  VAGLEVRLAQGAIAKGYH-----AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
              GL  R        G       A+D + R + EL +I R+ FS YFL VA  +   +  
Sbjct: 342  RTGLLARYPHLHTRGGLPGTSQAARDLQDRAEHELGIITRLGFSSYFLTVAAVVDLIEGM 401

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I V   RGSGA S+  +AL I+ +DP+   L+ ERFL+ DR ++PD DID    RR E+
Sbjct: 402  GIRVA-ARGSGASSLVNHALRISHVDPMANGLIMERFLSTDRSTLPDIDIDVESARRHEI 460

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
               V +++G ER   +    + +A+ A+RD G AL MP  +VD + K +    A     +
Sbjct: 461  YHAVVDRFGAERTTLMSMQNAYRARGAVRDAGLALGMPEPEVDAIAKQLWRFSASNF-RE 519

Query: 491  AIADDSRFREARLADP--------SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A+                       +D L++++++L+ L RH S H  G+++GD  L   
Sbjct: 520  ALQRMPELGGLSRRIESGRAEGDRQLDLLVDLTERLDRLPRHISMHPCGVILGDATLLHR 579

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLI 601
             P+       LP++QF+   ++  G +K D LG++  + +  ++  + +    ++DL  +
Sbjct: 580  TPVQ-PSGMGLPMSQFDKHDMDPMGFLKLDILGVRMQSAIAYTIAEVERTTGERIDLEQV 638

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV-- 659
            P DD  TY ++ T  TLG FQ+ES G R+ +  + P    D+   +SL+RPGP+ + +  
Sbjct: 639  PLDDDATYAMIRTTHTLGCFQIESPGQRELVGKLAPREFNDLTVDISLFRPGPMQSDMVR 698

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  +++G       HP + P+L ET GV ++ EQV++   +++G  L+ AD  RR +G 
Sbjct: 699  PFLEQRHGWAPAHYPHPDLRPVLAETHGVTVFHEQVLRTMDVMTGCGLARADEHRRLLGG 758

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
              +  +++    F +GA   G    +   ++  L+ F  +GF K+H AA+AV +Y +AW+
Sbjct: 759  PQEHLVEEA---FRTGALARGYPLEVIDEVWATLSAFGSFGFCKAHGAAFAVPTYHSAWL 815

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP---------SVNTPCVDFKV 830
            KTH+P  F+AA +  +            +AR+  I ++P           V       +V
Sbjct: 816  KTHHPAAFMAAILEHDPGMYPARLM-VAEARRMGIPVLPVDVNASSRHVHVEWVPAHPEV 874

Query: 831  GDNR-----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
             D       I   L ++ G+       +    A +P+ SL D   R        R LE L
Sbjct: 875  DDGAPGRWGIRLPLTSLSGLSEAETDRL---DAGRPYRSLADVRDRARPTA---RNLERL 928

Query: 886  VFAGALDCF----GYSRMQLLQSLDNIQ---------KYAQWVEKNRTNKHENIFAHEKG 932
               GALDC     G SR  L+  L+            + A      R  + E   A +  
Sbjct: 929  AQLGALDCLLPPGGASRTDLVHHLELQHSTTRGTAPGRTAPRSRSARPRQVEGQLALDLP 988

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                      F     + R   E  +     + H +D + P L  +G+   ++ +     
Sbjct: 989  DTELTALAPLFPDPGPAARVRTELELTALDVTAHLMDSHAPYLDALGVTRAKDLLGLRTQ 1048

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + + +A + V+ Q    R G R+ +++  +     +A+FF
Sbjct: 1049 SRVLVAGVRVATQTPPMRSGKRVVFLSVDDGTGCVDASFF 1088


>gi|289705560|ref|ZP_06501952.1| DNA polymerase III, alpha subunit [Micrococcus luteus SK58]
 gi|289557789|gb|EFD51088.1| DNA polymerase III, alpha subunit [Micrococcus luteus SK58]
          Length = 1232

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 265/1120 (23%), Positives = 449/1120 (40%), Gaps = 143/1120 (12%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAI----------------TDTNNLFS 54
            F HL V S++S   G                                     TD + L+ 
Sbjct: 14   FAHLHVASAFSAHYGVSWPE----------------DLVAAAAAADMDLLACTDRDGLYG 57

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA---EGYQR 111
              +        GI PI+G  L +   ++                +V+L        GY+ 
Sbjct: 58   MAKHVGACLRHGITPIVGVDLAVRWSED-----------EEAGRVVVLARGGCHGSGYRS 106

Query: 112  LIELVSRMYLL---DQGKQSV-------------RICLSWLQEIGTEG-----LIMLTGG 150
            L ELVS  +          S              R+          +      L +L G 
Sbjct: 107  LCELVSAAHARTTGGAAGGSPWASVAELAAAAAGRVP----TAANRDNPPTPELFVLLG- 161

Query: 151  SSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH-----RGYDRYRESQVVQLA 204
                + R             L  +K        + ++  H     R  D     + ++ A
Sbjct: 162  PDSDVGRHLARRRYAAGLTALRRWKAALPAGSPHADVVTHLSAPGRRLDTGHAVKTLRAA 221

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
                +P V TN   + + +     DVL AV   + +      +     +LK+ + M  I 
Sbjct: 222  RQARIPAVLTNAVRYAAPDGAATADVLDAVRALSSLDALHDLQPNGQGWLKSTAAMHRIA 281

Query: 265  SDLPEALENTVEIARRCSFIL---------QVHAPILPRFIEKECDDIQKEEENELRNKA 315
             ++  A ++        +  L               +PR  E     I    E+ LR + 
Sbjct: 282  HEIAFAADDRPAPLLEATRRLAEACALDPETDLGWGVPRVPEAAVIGIDGPPEHVLRERT 341

Query: 316  VAGLEVRLAQ-----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
              GL  R        G       A+D + R + EL +I R+ FS YFL VA  +   +  
Sbjct: 342  RTGLLARYPHLHTGGGLPGTSQAARDLQDRAEHELGIITRLGFSSYFLTVAAVVDLIEGM 401

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I V   RGSGA S+  +AL I+ +DP+   L+ ERFL+ DR ++PD DID    RR E+
Sbjct: 402  GIRVA-ARGSGASSLVNHALRISHVDPMANGLIMERFLSTDRSTLPDIDIDVESARRHEI 460

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
               V  ++G ER   +    + +A+ A+RD G AL MP  +VD + K +    A     +
Sbjct: 461  YHAVVERFGAERTTLMSMQNAYRARGAVRDAGLALGMPEPEVDAIAKQLWRFSASNF-RE 519

Query: 491  AIADDSRFREARLADP--------SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
            A+                       +D L++++++L+ L RH S H  G+++GD  L   
Sbjct: 520  ALQRMPELGGLSRRIESGRAEGDRQLDLLVDLTERLDRLPRHISMHPCGVILGDATLLHR 579

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLI 601
             P+       LP++QF+   ++  G +K D LG++  + +  ++  + +    ++DL  +
Sbjct: 580  TPVQ-PSGMGLPMSQFDKHDMDPMGFLKLDILGVRMQSAIAYTIAEVERTTGERIDLEQV 638

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV-- 659
            P DD  TY ++ T  TLG FQ+ES G R+ +  + P    D+   +SL+RPGP+ + +  
Sbjct: 639  PLDDPATYAMIRTTHTLGCFQIESPGQRELVGKLAPREFNDLTVDISLFRPGPMQSDMVR 698

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  +++G       HP + P+L ET GV ++ EQV++   +++G  L+ AD  RR +G 
Sbjct: 699  PFLEQRHGWAPAHYPHPDLRPVLAETHGVTVFHEQVLRTMDVMTGCGLARADEHRRLLGG 758

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
              +  +++    F +GA   G S  +   ++  L+ F  +GF K+H AA+AV +Y +AW+
Sbjct: 759  PQEHLVEEA---FRTGALARGYSLDVIDEVWATLSAFGSFGFCKAHGAAFAVPTYHSAWL 815

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP---------SVNTPCVDFKV 830
            KTH+P  F+AA +  +            +AR+  I ++P           V       +V
Sbjct: 816  KTHHPAAFMAAILEHDPGMYPARLM-VAEARRMGIPVLPVDVNASSRHVHVEWVPAHPEV 874

Query: 831  GDNR-----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
             D       I   L ++ G+       +    A +P+ SL D   R        R LE L
Sbjct: 875  DDGAPGRWGIRLPLTSLSGLSEAETDRL---DAGRPYRSLADVRDRARPTA---RNLERL 928

Query: 886  VFAGALDCF----GYSRMQLLQSLDNIQ---------KYAQWVEKNRTNKHENIFAHEKG 932
               GALDC     G SR  L+  L+            + A      R  + E   A +  
Sbjct: 929  AQLGALDCLLPPGGASRTDLVHHLELQHSTTRGTAPGRTAPRSRSARPRQVEGQLALDLP 988

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                      F     + R   E  +     + H +D + P L  +G+   ++ +     
Sbjct: 989  DTELTALAPLFPEPGPAARVRTELELTALDVTAHLMDSHAPYLDALGVTRAKDLLGLRTQ 1048

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + + +A + V+ Q    R G R+ +++  +     +A+FF
Sbjct: 1049 SRVLVAGVRVATQTPPMRSGKRVVFLSVDDGTGCVDASFF 1088


>gi|300311573|ref|YP_003775665.1| DNA polymerase III subunit alpha [Herbaspirillum seropedicae SmR1]
 gi|300074358|gb|ADJ63757.1| DNA polymerase III, alpha subunit protein [Herbaspirillum
           seropedicae SmR1]
          Length = 942

 Score =  422 bits (1084), Expect = e-115,   Method: Composition-based stats.
 Identities = 239/904 (26%), Positives = 385/904 (42%), Gaps = 57/904 (6%)

Query: 5   LEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
           +  + P +  L   S++S L+GA   + ++ +  A    A+AITD   L   +       
Sbjct: 1   MSTTLPEYAELYCRSNFSFLQGASHAHELVQRAIALDYRALAITDECTLAGVVRAYAAWK 60

Query: 64  A-------AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
                      + IIG        ++             +          EGY  L EL+
Sbjct: 61  EQFDKGRTQDFKLIIGSCFRFTGLEDEPAHPLAALTLVALAR------NREGYGNLSELI 114

Query: 117 SRMYLLDQGKQSVRICLSWLQ--EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           +        K S  +    L         L  L       +         +  + +L  F
Sbjct: 115 TLARTRAA-KGSYLLHPEDLSGPPPALSHLRALPDCQLILVPDY--PADEETLDAQLRWF 171

Query: 175 KKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
             L   R +V + R +R  D    + +      H LPL A  +            DV+ A
Sbjct: 172 APLAPGRSWVGITRLYRPLDDLHRAALEAATRRHGLPLAAVGDVQMHQRSRKYLQDVVTA 231

Query: 234 VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
           +     V Q+    + P+     RS +       P  L  T+ IA  C F L       P
Sbjct: 232 IRLGQPV-QECGHALAPNAEQHLRSRVRLGMVHTPATLAQTLAIAADCRFSLAELRYEYP 290

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             +            + LR + +AG   R  QG           R++++ EL +IA+ ++
Sbjct: 291 DELVPLGM----SAADYLRQQTLAGAAKRYPQGL------PGGVREQIEAELALIAQKEY 340

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             YFL V D +Q+A+   I    GRGS A S   Y L +T++DP    LLF RF++  R 
Sbjct: 341 EAYFLTVYDLVQFARSRGIL-CQGRGSAANSAVCYCLGVTEVDPTSTRLLFARFISEKRE 399

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
             PD D+DF   RR+EVI+++  KYG  R A      S + + ALR+VG+AL +  + VD
Sbjct: 400 EPPDIDVDFEHQRREEVIQHIYRKYGRRRAALAAAVHSYRPRGALREVGKALGVDAAIVD 459

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            + K      +    L   A+           P +     I+ KL    RH S H  G V
Sbjct: 460 AVAKSQHWFDSREELLARFAE----AGLDPELPQIGLWASITGKLLRFPRHLSQHTGGFV 515

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR- 592
           I    LS+LVP+      +  V +++   +E   L+K D L L  LT L+++L+ ++ R 
Sbjct: 516 IARGQLSRLVPIQNAAMPERCVIEWDKDDLESLKLLKVDVLALGMLTALRRTLELVSLRR 575

Query: 593 --GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                + +  IP +D  T+ ++    T+G+FQ+ES      L  MQP    D++  V++ 
Sbjct: 576 GLPEVMQMHAIPREDPATFEMICKADTIGVFQIESRAQMSMLPRMQPRTQYDLVVQVAIV 635

Query: 651 RPGPIDNIVVYNNRK----------NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
           RPGPI   +V+   +                 S    I  +L+ T G+ I+QEQVM +A 
Sbjct: 636 RPGPIQGGMVHPYLRRRELVREGGSFDYPDNTSKSGKIKKVLERTLGIPIFQEQVMDVAI 695

Query: 701 LLSGYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
             +GYS SEAD LRR+M     K  M    ER + G + NG S+  A +IF+ +  F +Y
Sbjct: 696 EAAGYSPSEADDLRRSMAAWKRKGGMGPHYERLVLGMTDNGYSREFAESIFKQIEGFGEY 755

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
           GF +SHAA++A+++Y ++W+K H P  FL   +  +        +  QDAR+  +Q++P 
Sbjct: 756 GFPESHAASFALLTYFSSWLKCHEPEAFLCGLLNSQPMGFYSPSQLIQDARRHGVQVLPA 815

Query: 820 SVNTPCVDFKVG-------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
           +V     +  +           +   L+ ++ +    A+ I +A A +PF  ++D   R 
Sbjct: 816 NVVRSRWESTLELPSSAGARPAVRLGLSLLRSMPAEAAQRIEQARAQRPFADVDDLARRA 875

Query: 873 DSKK 876
              +
Sbjct: 876 GLDR 879


>gi|253315124|ref|ZP_04838337.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp. aureus
            str. CF-Marseille]
          Length = 967

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 281/905 (31%), Positives = 454/905 (50%), Gaps = 64/905 (7%)

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    LQ+  +  +I+                     +      + +        +Q   
Sbjct: 7    VSFELLQQFSSNLIIIF--------------------KNVADEHRDI--------VQVFD 38

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             ++         L     +  V   N  + + +D +    L A+  +  +          
Sbjct: 39   SHEDTYLDHQSVLVQ--GIKHVWIQNVCYQTRQDADTISALAAIRDNAKLD--------- 87

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
               + ++ +  + F    E  +  +         +            +      +   +E
Sbjct: 88   --LIHDQEDFGAHFLTEKEIKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQYQTPNDE 145

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
               K +      L         +   Y +RL +E  VI  M F  YFLIV+D I +AK N
Sbjct: 146  SAKKYLW---RVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTN 202

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            ++ VGPGRGS AGS+ +Y L IT IDP++F+LLFERFLNP+R++MPD DIDF   RR+ V
Sbjct: 203  DVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERV 262

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            I+YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ +  LIP+     +   
Sbjct: 263  IQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEA 322

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
               DD  F++    +   +R   I +KLEGL RH STHAAGI+I D PL +  P+ +   
Sbjct: 323  YQIDD--FKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDT 380

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETY 609
                +TQ+ M   E+ GL+K DFLGL+ L+++ + L  + +  G+ +D+  IPFDD + +
Sbjct: 381  G--LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILIQVKKDLGINIDIEKIPFDDQKVF 438

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL+   T GIFQLES G+R  L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   
Sbjct: 439  ELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPS 498

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            K+  +HP ++P+LK T GVIIYQEQ+MQIA   + +S  EAD+LRRAM KK +  ++ ++
Sbjct: 499  KVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESER 558

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            + FI GA +NG  + I+  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A
Sbjct: 559  QHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYA 618

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
              ++  + + +K  +  ++A++  I I+PP++N     +K     IY S+  IKGVG  +
Sbjct: 619  NILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQS 678

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             + I++    +  F    DF  R+  +   R++LE+L+  GA D FG +R  LLQ++D +
Sbjct: 679  VKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQV 738

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
                  +E++       +F       + K   E       ++  + E+  LGFY S HP+
Sbjct: 739  LDGDLNIEQD-----GFLFD----ILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPV 789

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            D               +         I +       +Q +T+ G  + +VT ++  +  +
Sbjct: 790  D---KKFVAKQYLTIFKLSNAQNYKPILV--QFDKVKQIRTKNGQNMAFVTLNDGIETLD 844

Query: 1029 ANFFP 1033
               FP
Sbjct: 845  GVIFP 849


>gi|203454755|ref|YP_002225071.1| gp192 [Mycobacterium phage Myrna]
 gi|197311803|gb|ACH62161.1| gp192 [Mycobacterium phage Myrna]
          Length = 1138

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 235/1114 (21%), Positives = 436/1114 (39%), Gaps = 103/1114 (9%)

Query: 5    LE-KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +   +  +V L  H   S L+G      I+++       A+++TD + +   +       
Sbjct: 1    MSISNADYVALHNHGDTSFLDGRARHEEIVERAVELGNEAVSLTDHDEVNGHINMWNLCQ 60

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             AGI+ + G +       + + + +  T       I LL    EG + L  L S  Y   
Sbjct: 61   KAGIKFVPGAEQR--WLMDPEESRRLSTSGYDYSHICLLAENNEGLKNLWTLSSLAYEPG 118

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
               +  ++    +++  + GL    G            +  + A +       +FGDR Y
Sbjct: 119  NFYRYPQLNPPLMKQYAS-GLWASDGCGLTRFAGYIEEDDEESARQEWAVLLDIFGDRFY 177

Query: 184  VNLQ----------RHRGYDRYRESQV-------VQLAYTHELPLVATNNSLFLSEEDYE 226
              L                +R   +++       V+ A    +PLV  N++ +  E D++
Sbjct: 178  SELHTFKFLESEDRPLDAKEREINAKITKMNHAKVRFAQEMGVPLVVVNDAHYAWERDWK 237

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
             H ++  +       Q +      D  +     +  +             +         
Sbjct: 238  QHRLVWKMNTKNKKDQSEGNAHAADWMMSADELVHYMGLHGISRSIVEEAVKNTRMIADS 297

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
                I P        D  +E+          G +         KG   + YR RL+ E  
Sbjct: 298  CTVEIKPTINMPRLHDTDEEDRAAFLRSCEEGFKRF----VTDKGLDEETYRARLEREQK 353

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA-------------YALTIT 393
            +I    F GYF +V+D++  A+          G+                    Y L IT
Sbjct: 354  LIIDKDFYGYFNVVSDYMLAARSGEYIKWVKPGAKPKPCICGPGRGSGGGSLVNYLLGIT 413

Query: 394  DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
             +DP+++ L FERF+NPDR   PD D+DF +  R +++ Y+  +YG ++V  I T     
Sbjct: 414  SLDPIKYDLSFERFINPDRPDFPDIDVDFQKSHRKDLLGYMAARYGGDKVVAIGTKAKSG 473

Query: 454  AKAALRDVGRALQMPY-------------SQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
               A++D+ +AL + +                D     +  D   P   + +       +
Sbjct: 474  PARAIQDLCKALGIDFKDSLAMSKLIKKVDFSDTNDYEVNPDYVPPTWEETLELIGGELQ 533

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR--DVRSDLPVTQF 558
              +   +   L   +Q + GL R A  HAAGI +   P+    P  R          TQF
Sbjct: 534  PYMEKYADTGLFRYAQDMVGLSRQAGVHAAGIFMDTDPILGKAPTRRKGGSPDAPVATQF 593

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV------------------DLSL 600
            +M+ +   G +K DFL  K L +L  + D + +R  K                    +  
Sbjct: 594  DMEEMAWLGAVKMDFLSNKGLDVLSIARDLIWERHGKWIDYDGFLYGAPPEGAEIIHMDD 653

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI-- 658
              + D   +  +    T GIFQ+ +    +  +  +P  ++D+  LVS+ RPG +     
Sbjct: 654  DKYADPTIWEQIDLGHTAGIFQINTPSGTKQAKRFKPRNLKDLADLVSVNRPGVLRVPGL 713

Query: 659  -VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
               Y  R++G+E+I   HPL++ +   T G+++YQE ++   +LL+ ++  E + LR+A+
Sbjct: 714  LDRYMRRRHGEEEITYDHPLLEQVTGHTMGILVYQEDLVAACRLLANFTPGEGETLRKAI 773

Query: 718  GKKIKEEMDKQKERFISGAS------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            GKK  + M   K +F+ G        + G ++ +A  I++ +   A Y FNK+HA  YA+
Sbjct: 774  GKKKLDLMQSFKGQFLEGCMANREFTRQGGNRALAERIWQQMIASASYAFNKAHAMGYAM 833

Query: 772  ISYQTAWMKTHYPVEFLAASM----TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
             + Q  W+K HY  EF    +        D  +K   F ++ R+    ++PP VN     
Sbjct: 834  QAVQEIWVKAHYFQEFETGCLAVYGEDVKDGEKKSLVFLRECRRRKQPVLPPDVNQSQER 893

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR-VLESLV 886
            F + D+ I Y L  I G+G +    I+    ++P+  L+D+  R       +R V+++LV
Sbjct: 894  FSLTDDGIRYGLIDINGIGPSVIPDII---KNRPYVDLQDYLDRTKKGLGGKRGVVDNLV 950

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD----KITLEK 942
              GA D  G SR  +L  +     + +     +     ++   +K  +           +
Sbjct: 951  KIGAFDWTGQSRSDMLDQV--YYHWCRMEIAEKKRNSISVEETDKIVWDKWRKNPDKFPR 1008

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
            F  +   V  + E+ ++G + +  P+  Y  ++    I+   +      G    +   ++
Sbjct: 1009 FKFDKPEVVQKIEEDLVGTFITRDPMGPYVSMIEGECIQHPTDMEDFRTGQRFVIGGELM 1068

Query: 1003 SKQQKKTRKGSRIGWVTF----SEPAKEYEANFF 1032
               + + R G  + ++T      +    +E   F
Sbjct: 1069 RIHKHQARNGE-MAFLTVRWNEED----FEFLAF 1097


>gi|212695654|ref|ZP_03303782.1| hypothetical protein ANHYDRO_00171 [Anaerococcus hydrogenalis DSM
            7454]
 gi|212677327|gb|EEB36934.1| hypothetical protein ANHYDRO_00171 [Anaerococcus hydrogenalis DSM
            7454]
          Length = 754

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 216/644 (33%), Positives = 348/644 (54%), Gaps = 28/644 (4%)

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            MPD DIDFC + RD V+ YV + YG + V+QI+TFG ++A+ A+RDVGR + + + +VD+
Sbjct: 1    MPDIDIDFCYENRDRVVDYVYDLYGKDHVSQIVTFGRMKARNAIRDVGRVMDISFKKVDK 60

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
            + KLIP      +    + +  +       D    R+++ ++ +E L RH S HAAG+VI
Sbjct: 61   IAKLIPQAIGMTIDKA-LENTEKLAYEYENDVETKRMIDTARNIENLPRHTSIHAAGVVI 119

Query: 535  GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
                L+ +VP+     +D  VTQFNM  IE+ GL+K DFLGL+ LT++Q ++  + + + 
Sbjct: 120  SKEILTDIVPLALS--NDQIVTQFNMTEIEELGLLKMDFLGLRNLTVIQDTIKDVKKYKN 177

Query: 594  VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            + ++L  I  +D +         T+GIFQ ES+GMR  L+ ++P   +D++A  SL+RPG
Sbjct: 178  IDINLDNIDENDPKVLEQFRKAETIGIFQFESAGMRNFLKNLKPTRFDDLVAANSLFRPG 237

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            P+D I  Y   K   + +  I P + P+L+ T G+I+YQEQVMQI Q L+G+SL EAD L
Sbjct: 238  PMDQIPNYIKNKMHPQNVSYIDPSLKPILEVTYGIIVYQEQVMQIVQQLAGFSLGEADNL 297

Query: 714  RRAMGKKIKEEMDKQKERFISG------------ASKNGISKTIAVNIFELLAKFADYGF 761
            RRAM KK    M+  +E F+ G               NGIS+  A  I++ +  FA Y F
Sbjct: 298  RRAMSKKKMSVMEANREIFVHGKKDAKGNYEVLGCVNNGISEKNANKIYDEMISFAKYAF 357

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NKSH+AAY++++ QTA++K ++  E++A  +T  M +  K+  +  +A++  I+I+PP +
Sbjct: 358  NKSHSAAYSLVAIQTAYLKCYFKEEYMANLLTSIMGDSSKVYLYISEAKRLGIEIVPPDI 417

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV---DSKKLN 878
            N     F    N+I + ++AIK VG      I++   +K + + +DF  R+   D   LN
Sbjct: 418  NKSERRFIAEKNKIIFGMSAIKNVGDNLIDLIVKIRDEKKYKTFKDFLERIEANDPTALN 477

Query: 879  RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI--FAHEKGTFSD 936
            ++ LESL+ +GA D  GY R +L+   +   +     EK       N+  F  +     D
Sbjct: 478  KKALESLIKSGAFDSLGYKRSELIAVHETALQSIHDNEKVNLKGQMNLLDFDQKDQNEQD 537

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI------ 990
             I     +   +  +   E+ VLGFY S HPL+     ++K      E            
Sbjct: 538  DIKFPPVNEYKNKQKLSLEKEVLGFYISDHPLNSLSDRVKKYTNFSTEILSELRPIDLDK 597

Query: 991  -RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 + +A ++ +K +  T+K + + + T  +     E   FP
Sbjct: 598  YDNKEVVMAGVITNKSETMTKKNTLMAFSTLEDMYGSIEMIIFP 641


>gi|324014098|gb|EGB83317.1| DNA polymerase III, alpha subunit [Escherichia coli MS 60-1]
          Length = 564

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 232/576 (40%), Positives = 339/576 (58%), Gaps = 22/576 (3%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGTAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKR 559


>gi|324017809|gb|EGB87028.1| DNA polymerase III, alpha subunit [Escherichia coli MS 117-3]
          Length = 560

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 231/576 (40%), Positives = 339/576 (58%), Gaps = 22/576 (3%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKR 559


>gi|300920134|ref|ZP_07136585.1| DNA polymerase III, alpha subunit [Escherichia coli MS 115-1]
 gi|300412831|gb|EFJ96141.1| DNA polymerase III, alpha subunit [Escherichia coli MS 115-1]
          Length = 566

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 231/576 (40%), Positives = 339/576 (58%), Gaps = 22/576 (3%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKR 559


>gi|300932138|ref|ZP_07147423.1| DNA polymerase III, alpha subunit [Escherichia coli MS 187-1]
 gi|300460114|gb|EFK23607.1| DNA polymerase III, alpha subunit [Escherichia coli MS 187-1]
          Length = 566

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 230/576 (39%), Positives = 338/576 (58%), Gaps = 22/576 (3%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELNA 110

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
            GLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 111 -GLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RL+ EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKR 559


>gi|282852082|ref|ZP_06261440.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri 224-1]
 gi|282556842|gb|EFB62446.1| DNA polymerase III, alpha subunit [Lactobacillus gasseri 224-1]
          Length = 899

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 284/877 (32%), Positives = 452/877 (51%), Gaps = 27/877 (3%)

Query: 159  FFFNSSQVAEKRLLTFKKLFGDR--LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNN 216
               N+  +    +   K        +Y+ +   +G   Y    +  LA   EL L A  +
Sbjct: 2    LQTNNPNMGANYVRILKDAVPTSSLVYLGVYADQGQQEYIN-YLRSLATQFELSLAAVED 60

Query: 217  SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
              +L+  +      L A+  +T +   ++       +    SE + +       +E+ +E
Sbjct: 61   GQYLNRNEQFLRRTLQAIKSNTHLENVEQLAKQAGSHYLKTSEELQVN-YRKFEIEDALE 119

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
             A +   +           + K   +     +  L + A  GL  R        G   + 
Sbjct: 120  NAEKIGQLCNAKITFQDPQLPKFKQNKFPTSKEYLHSLAQNGLAKRFK------GQIPER 173

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
            Y++RLD+EL VI  M F  YFLIV D + +A   +I  GPGRGS AGS+ +YAL IT++D
Sbjct: 174  YQKRLDYELKVINEMGFDDYFLIVWDVMNFAHSVHITTGPGRGSAAGSLVSYALRITEVD 233

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
            PL ++LLFERFLNP R  MPD D+D   +RRDEVI+Y+  KYG    AQI+TFG+L AK 
Sbjct: 234  PLEYNLLFERFLNPARQQMPDIDLDIPDNRRDEVIKYMFEKYGMNHAAQILTFGTLAAKQ 293

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
             L+DV R   +   +  R    IP+        +A       +     +     L   ++
Sbjct: 294  VLKDVCRVFGLNKVETYRWLDAIPHAKGKITLAEAYQKSKELQLLVNTNTFSKILFATAE 353

Query: 517  KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             LE L RH S HAAG+VI D  L+++V +       +PVTQ     +E  GL+K DFLGL
Sbjct: 354  HLENLPRHYSIHAAGLVITDDSLAEIVGLQ-AGPLGIPVTQQTKLNVESLGLLKIDFLGL 412

Query: 577  KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            + LT+L   +  L   GV++D + IP +D ET  L     T  +FQ ES G+++ LE + 
Sbjct: 413  RNLTILGNIIAALKSEGVEIDPNQIPLNDQETLALFQRGDTDAVFQFESDGIKRVLEQLH 472

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            PD  EDI+A+ +LYRPGP++NI  + NRK+GKE++    P +  +L  T GV++YQEQVM
Sbjct: 473  PDSFEDIVAVNALYRPGPMNNIGHFINRKHGKERVQYPDPSLKKILGPTYGVLVYQEQVM 532

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
            Q AQ+L+G+SL EAD+LRRAM KK  + + K++E+FI GA K G  K +A  +++ +A+F
Sbjct: 533  QTAQVLAGFSLGEADLLRRAMSKKNADVIQKEREKFIQGAVKLGRRKEVAEQVYDYIAQF 592

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A+YGFN+SHA AY+ I++  A+ K HYP  F  + +   + N  KI ++   A++  I+ 
Sbjct: 593  ANYGFNRSHAVAYSKIAFWLAYFKVHYPGAFYLSLLNSNIGNRNKIAQYLMQAQEAGIKT 652

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            +PP +     DF + + +I   L AI+G+ +   + I+E    +P  S+ DF  ++D+  
Sbjct: 653  LPPDIENSQADFSLENGKILVGLKAIRGLRSDLLKQILEI--KRPIKSMTDFLWKIDNNL 710

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
            L+   + +L+ AGA D    +R +LL+   ++ +  +    N      ++F     T   
Sbjct: 711  LSADAIANLIKAGAFDRLAPNRNELLKINKDLVESVKMAGSN-----LSLF----ETLEP 761

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            KI  EK     ++ +   E   +GF    +P+   +   RK   K  +   +  +G  + 
Sbjct: 762  KIEEEKMP--TAAEKSAMEVEAMGFSTGINPIIAVQKYARKYNAKRLQAFESNEQGIAV- 818

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                ++  +Q  T+KG  + +  FS+ + + +   FP
Sbjct: 819  --GKLMRIKQITTKKGDNMAFAVFSDSSGDKDFTIFP 853


>gi|300900778|ref|ZP_07118922.1| DNA polymerase III, alpha subunit [Escherichia coli MS 198-1]
 gi|300355727|gb|EFJ71597.1| DNA polymerase III, alpha subunit [Escherichia coli MS 198-1]
          Length = 570

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 232/576 (40%), Positives = 340/576 (59%), Gaps = 22/576 (3%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA +  LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAESRGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVMRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP DP   +  +A   + 
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEP 463

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVT
Sbjct: 464 QLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVT 523

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
           QF+   +E AGL+KFDFLGL+TLT++  +L+ + +R
Sbjct: 524 QFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKR 559


>gi|39934872|ref|NP_947148.1| error-prone DNA polymerase [Rhodopseudomonas palustris CGA009]
 gi|71151838|sp|Q6N8V0|DNAE2_RHOPA RecName: Full=Error-prone DNA polymerase
 gi|39648722|emb|CAE27244.1| putative DNA polymerase III alpha chain [Rhodopseudomonas palustris
            CGA009]
          Length = 1195

 Score =  416 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 224/905 (24%), Positives = 379/905 (41%), Gaps = 71/905 (7%)

Query: 170  RLLTFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             L     L  D +++ L  + RG D+ R +++ ++A    +P +ATN+ L+         
Sbjct: 214  ALERLTALNADAVWLGLTPYYRGDDKRRLARLRRIAAVARVPCIATNDVLYHHPRRRALQ 273

Query: 229  DVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            DVL  V   T + +  R      + +LK  +EM  +F   PEA+  T+  A R SF L  
Sbjct: 274  DVLTCVREKTSIDKAGRRLEGNAERHLKPAAEMARLFRHDPEAIAETLRFADRISFTLDE 333

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                 P           K  +  L++    G++     G       +   R  +  EL +
Sbjct: 334  LKYHYPDEPVPPG----KTAQAHLQDLTEQGIKQYFPNG------ISDRLRATIAKELAI 383

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I R  ++ YFL V D +++A+  +I    GRGS A S   Y L IT +DP    LLFERF
Sbjct: 384  IERRGYAHYFLTVHDIVRYARSQDIL-CQGRGSAANSAVCYVLGITCVDPTEIDLLFERF 442

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            ++ +R   PD D+DF   RR+EV++Y+  +YG  R A + T    + ++A+RDVG+AL +
Sbjct: 443  VSEERDEPPDIDVDFEHSRREEVMQYIYRRYGRHRAAIVATVIHYRPRSAIRDVGKALGL 502

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
                   L   +       ++        R       +P + R +E++ +L G  RH S 
Sbjct: 503  SEDVTAALADTVWGSWGKGLN----EMQVRQAGLDPHNPMIGRAVELATELIGFPRHLSQ 558

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            H  G V+    L   VP+     +D    +++   I+   ++K D L L  LT ++K   
Sbjct: 559  HVGGYVLTQDRLDSYVPIGNAAMADRTFIEWDKDDIDAVKMMKVDVLALGMLTCIRKGFH 618

Query: 588  FLAQRGVKVDL--SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             +AQ          +   DD+  Y +L    ++G+FQ+ES      L  ++P C  D++ 
Sbjct: 619  LIAQHKGVRFQLSDIKSEDDNAVYKMLQRGESIGVFQVESRAQMNMLPRLKPRCFYDLVI 678

Query: 646  LVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQV 695
             V++ RPGPI   +V+    R+NG+E +V   P         +  +L +T GV ++QEQ 
Sbjct: 679  EVAIVRPGPIQGDMVHPYLRRRNGQEPVVYPSPSGEAGDKNELRQILGKTLGVPLFQEQA 738

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLA 754
            M+IA   + ++  EA+ LRRAM        + K + + I    K G   T A N FE + 
Sbjct: 739  MRIAIEAAHFTPDEANQLRRAMATFRNVGTIGKFEAKMIGNLVKRGYDATFAKNCFEQIK 798

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             F  YGF +SHAA++A + Y +AWMK  +P  F  A +  +        +   DAR   +
Sbjct: 799  GFGSYGFPESHAASFAKLVYVSAWMKCEHPDAFCCALLNSQPMGFYAPAQIVGDARSNGV 858

Query: 815  QIMPPSVNTPCVDFKVGD-----NRIYYSLAAIKGVG-TTTARHIMEASADKP------- 861
            ++ P  V+       + +     + +      I G          ++  A +P       
Sbjct: 859  EVRPVDVSFSEGQCTLEERCGRHHAVRLGFRMIDGFRWADPDEERVQLEAGEPPSDDWAA 918

Query: 862  ----------FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
                      F SLE F        L +R L  L  A A    G  R   L ++  +   
Sbjct: 919  RIVAARARGAFTSLEQFAR---ITALPKRALILLADADAFRSLGLDRRAALWAVRRLPDD 975

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
                          +F        +            +     + + +     GHP++  
Sbjct: 976  V----------PLPLFEAASAREQEDERAAPLPAMPMAEHVVADYQTVRLSLKGHPMEFL 1025

Query: 972  KPILRKMGIKGYEESVATIR---GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            + +     +    E   + +   G  +R A +V+ +Q+  +  G  + ++T  +      
Sbjct: 1026 RALFAAERVVTCREVSRSEQRASGCWLRCAGVVLVRQRPGSANG--VIFMTIEDETGIAN 1083

Query: 1029 ANFFP 1033
               +P
Sbjct: 1084 IVVWP 1088



 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 20/139 (14%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           S  +  + V +++S LEG     + + + +     AI I D N L   +    +     +
Sbjct: 2   SARYAEIGVTTNFSFLEGGSHPQDYVHEASRLGLDAIGIADRNTLAGVVRAFSEFDNEEL 61

Query: 68  ----QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
               + +IG +L                     P ++   +    Y RL  L+S   L  
Sbjct: 62  IHKPKLLIGTRLCFADG---------------TPDLLAYPTDRAAYGRLCRLLSAGKLR- 105

Query: 124 QGKQSVRICLSWLQEIGTE 142
            GK    +  + L+    E
Sbjct: 106 AGKGECHLTFADLEAFIHE 124


>gi|258614449|ref|ZP_05712219.1| DNA polymerase III, alpha subunit [Enterococcus faecium DO]
          Length = 1013

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 284/927 (30%), Positives = 459/927 (49%), Gaps = 44/927 (4%)

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
            ++L SR  + +            L E+     +     ++  +  AF  N          
Sbjct: 1    MKLSSRKMIQE---------KLELAEMTETDHLAFVVPANHSVSEAF--NKEDNFFGHWQ 49

Query: 173  TFKK-LFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
               + +F    Y+ L  +         +  Q        L A +    L +E+  A +V+
Sbjct: 50   FLLENVFTRNFYIGLTENTPDQ---LPEWYQYVIKENYSLCALHPIASLQQEELFALEVM 106

Query: 232  MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA-LENTVEIARRCSFILQVHAP 290
              +   + +  ++     P            +     +A L   V  A+R +  +     
Sbjct: 107  KHIKEGSQIPLENLSASLPLTANVYLLSEQEMIKRFEKAGLSQAVIGAQRLAESISFEFQ 166

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
               + +        K+    LR    + +E R+         + ++Y++RLD+EL+VI +
Sbjct: 167  FHQKLLPHYPVPNGKQAGEYLRELCYSQVERRITD-------YTKEYQERLDYELSVIHQ 219

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
            M F  YFLIV D + +A +N I  G GRGS AGS+ AY L ITD+DPL + LLFERFLNP
Sbjct: 220  MGFDDYFLIVWDVMAFAHRNKIVTGAGRGSAAGSLVAYVLEITDVDPLEYDLLFERFLNP 279

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            +R +MPD D+D   +RR+EV+ YV+ KYG   +AQI TFG++ AK  LRD  R   +  S
Sbjct: 280  ERFTMPDIDLDIPDNRREEVLNYVREKYGQYHMAQIATFGTMAAKMVLRDAARVFGLSQS 339

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
            + +R  K IPN     ++        +  E   A      L + +  LEGL RH STHAA
Sbjct: 340  EANRWSKAIPNQLKITLTQA-YKTSHQLVELVQASEKNQLLFKTAVILEGLPRHVSTHAA 398

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
            G+VI D+ L +LVP+ R          + M  +E  GL+K DFLGL+ L+++  +L  + 
Sbjct: 399  GVVISDKNLLELVPLQRGSDEAFLTQ-YTMNEVEAIGLLKMDFLGLRNLSIIDFTLKAVK 457

Query: 591  Q-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            +  G ++ L  IP +D +T  L     T G+FQ ES+G+R  L  + P+ IEDI A+ +L
Sbjct: 458  RVEGYEIRLKEIPLNDAKTLLLFQRGETSGVFQFESAGIRNVLRRLDPENIEDIAAVNAL 517

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
            YRPGP+ NI  +  RK GKE I      + P+LK T GVI+YQEQ+MQIA  ++G++L +
Sbjct: 518  YRPGPMQNIDTFIARKKGKEAIRYPDDSLIPILKNTYGVIVYQEQIMQIASTMAGFTLGQ 577

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            +D+LRRA+ KK K+ +D++K  F+SGA + G S+  A  ++E + KFA+YGFN+SHA AY
Sbjct: 578  SDILRRAVSKKKKDVLDEEKSHFVSGALQQGYSEKTAATVYEYIEKFANYGFNRSHAFAY 637

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
            + + +Q A++K H+P  F  + M     N  K+K++  +AR+  +++  PS+N     F+
Sbjct: 638  SFVGFQMAYLKAHHPGAFFTSLMNSVRHNTSKLKEYIAEARKNKLKLSSPSINQSNSSFE 697

Query: 830  -VGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             V    I + L AIKG+       I+     + PF S++ F  R+D + L   +L+SL  
Sbjct: 698  LVNKEEIRFGLTAIKGIRRDFVEDILNERKQNGPFQSVDQFLIRIDKRWLKLELLQSLTA 757

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
             G  D    +R QL+  L+   +   +     +    ++           +  E+ +   
Sbjct: 758  VGVFDELSPNRKQLMLDLEGKIQNIVY-----SGGSLDLLGIM------ALKEEEVADYT 806

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV-ATIRGNNIRLAAMVVSKQQ 1006
               R + E+  LG Y SGHP         ++ +    + +   +    + L  M+   ++
Sbjct: 807  LEERLKLEEEYLGIYLSGHP----AEGFDRLRLAKQVQLITDIVPNQPVNLLVMIKEVRE 862

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +T+KG  + +V  ++ + E     FP
Sbjct: 863  IRTKKGELMAFVEGTDSSGEISVTVFP 889


>gi|255521289|ref|ZP_05388526.1| DNA polymerase III (alpha subunit) DnaE [Listeria monocytogenes FSL
           J1-175]
          Length = 694

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 268/713 (37%), Positives = 409/713 (57%), Gaps = 34/713 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3   FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG  + I          QG         ++L+  +  GY  L+++ S +   ++G     
Sbjct: 63  IGMTVTI----------QGYLNPINSYELILIAESTAGYHELLKIASAIQTREEG---PE 109

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
           +  SWL+   +  LI ++ G+ G I+R     + + A +      ++FG + +Y++ Q+ 
Sbjct: 110 LPQSWLRAYSS-NLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKESVYLSAQKE 168

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                   +++   +    +P+VAT N  ++  +D +A +VL A+  +  V     P   
Sbjct: 169 NP---RLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDWTTLPLAG 225

Query: 250 PDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
           P+++           ++    A   T E+A RC   + +   +LPRF      +  +   
Sbjct: 226 PNYFTSQEEMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPL----NEGQNAS 281

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
           + LR  A AGL+ R   GA        +Y++RL++EL VI  M F+ YFLIV D I++++
Sbjct: 282 DVLRQTAFAGLKERNLLGA--------EYQERLEYELKVITEMGFADYFLIVWDVIRYSR 333

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
           +  I  GPGRGS AGS+ +YAL ITD+DP+R++LLFERFLNP+R++MPD D+DF  +RRD
Sbjct: 334 EAGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRRD 393

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
           EVI YV +KYG   VAQI TFG+L AKAA+RD  R+  +    +    KLIP+     + 
Sbjct: 394 EVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGITL- 452

Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            +A+ +  R      +    + + E++ +LEGL RH STHAAGIVI D+PL + V +   
Sbjct: 453 QKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVALQLG 512

Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHE 607
              D  +TQF M  +EK GL+K DFLGL+ L+LL + L  +   R   + L+ I  +D +
Sbjct: 513 S-GDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADISLEDKK 571

Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
           T  L  T  T G+FQ ES G+R+ L  ++P   ED++A+ +LYRPGP++ I  +  RK+G
Sbjct: 572 TLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDTFIARKHG 631

Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
           KEKI   HP + P+L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK
Sbjct: 632 KEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKK 684


>gi|218780427|ref|YP_002431745.1| DNA polymerase III, alpha subunit [Desulfatibacillum alkenivorans
           AK-01]
 gi|218761811|gb|ACL04277.1| DNA polymerase III, alpha subunit [Desulfatibacillum alkenivorans
           AK-01]
          Length = 880

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 277/894 (30%), Positives = 428/894 (47%), Gaps = 48/894 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL VHS +S + G      +  K       A A+TD N ++ A+ F   A   G+  +
Sbjct: 2   FAHLHVHSGFSFMYGTFLPEALAAKAKEAGFNAAALTDKNGVYGAVRFCAAAEKLGVHAV 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG QL I+ +D+                +VLL  + +GY  L  L++  +     +    
Sbjct: 62  IGTQLTIEGRDD----------------LVLLAKSPKGYNNLCRLITLAH-EYGPRDQPA 104

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT---FKKLFG-DRLYVNL 186
               +L  + +  ++ LTGG  G   +           +        +++FG + +YV +
Sbjct: 105 CPEKFLA-LHSRDIVCLTGGRDGRFFKLVEGADGTQYRRACGWVWRLQEIFGKENVYVEI 163

Query: 187 QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
           Q     YD      + ++A     PL ATN+ + L   D   H   +    + V  +  +
Sbjct: 164 QNAGTPYDARIMHIMARVAEKAGAPLAATNDVVCLEPGDLPVH-HALVDIQNQVHHRACQ 222

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
            R + ++YLK++ EM  +     +ALENT  IA  C  +L +     P F          
Sbjct: 223 ARESREYYLKSQEEMAKLIPY-SQALENTGIIAHECQAMLPLGKSSPPVFPVPPGM---- 277

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            ++  L       L                D  QRL+ EL  I R   SGYFL+V +   
Sbjct: 278 SQDQALAKLCYRSLAR-------RFNPLELDVLQRLEKELGHIRRRDLSGYFLLVKEIHS 330

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +AK   I  G  RGS AGS+    L +  ++PL   LLFERFLN  R+ MPD D+DF   
Sbjct: 331 FAKARRIR-GTVRGSAAGSLVL-HLLLGGVNPLEHRLLFERFLNNGRLDMPDVDMDFDSL 388

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RRDE+  Y+  KY + + A + T  + +A+ ALR +GRAL   Y ++DRL + +P+    
Sbjct: 389 RRDEIFEYLMEKYPN-QAAMVATVSTFRARGALRSLGRALGYSYEKIDRLTQFVPHFLRS 447

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
               +AI        + L     D LL +++K+ GL  + S H  G+V+    +    P+
Sbjct: 448 HDIRKAIERMPELEGSPLLQE--DELLWLAEKISGLPHNLSVHLGGMVLTPGEIFNWSPL 505

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
               R  +PV QF+   +E  GL+K D LGL+  + +Q  ++ L ++GV++ L  +P DD
Sbjct: 506 QT-SRKGIPVVQFDKDDVEALGLVKLDILGLRMHSAIQFGVELLEKKGVRLCLDEVPLDD 564

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN-- 663
             T+ +L T  ++G+FQ+ES G RQ L  +QP   EDIIA +SL+RPGP+   +V     
Sbjct: 565 PATFRMLRTTDSVGVFQVESPGQRQLLGRLQPRHFEDIIAEISLFRPGPMSGAMVEPYVL 624

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
           R+N KE +   HP + P+LK T GV+++QEQ+++IA  ++G    E D +RR++ KK   
Sbjct: 625 RRNNKEPVTYPHPDLRPILKSTFGVVLFQEQILEIAHDIAGMPYGEGDRMRRSLSKKAPR 684

Query: 724 EMDKQKER-FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            + ++ E  F+ G  K G     A   F+L+A F  YGF K+HAA++A I+YQ+A++KTH
Sbjct: 685 AVFREMEEAFVKGCLKKGYDNPTAQAFFDLVASFMGYGFCKAHAASFAHITYQSAYLKTH 744

Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
           YP+ F    +  E            +AR+  I ++ P VN   V +   +  I   L  I
Sbjct: 745 YPLAFYFGILNAEHVGSYPHSVILNEARRMGIPVLQPHVNKSGVQYLEENGGIRIPLIRI 804

Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
           K +G      I+       F S +DF  RV      R  LE    AGAL     
Sbjct: 805 KNIGPKYCEKIILEREKGLFLSADDFTKRVSLPAKARFSLE---KAGALKGLDG 855


>gi|261415097|ref|YP_003248780.1| DNA polymerase III, alpha subunit [Fibrobacter succinogenes subsp.
            succinogenes S85]
 gi|261371553|gb|ACX74298.1| DNA polymerase III, alpha subunit [Fibrobacter succinogenes subsp.
            succinogenes S85]
          Length = 1285

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 297/919 (32%), Positives = 440/919 (47%), Gaps = 69/919 (7%)

Query: 151  SSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELP 210
              G I  A   N+ ++AE+   T K   GD  +    R +  D +  S+         + 
Sbjct: 262  LFGHIPGAI-ENTVKIAERCNFTVKTGIGDEFW---PRFKIPDEFLASE-----EYQNIK 312

Query: 211  LV--ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             +  A  ++ +    + E                KDR +    +Y   +       +D  
Sbjct: 313  AIMKAEYDAEYPVVREREL-----------KGVIKDRKKKVKANYCAEKGIAEDALTDAD 361

Query: 269  EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
             A  + +                      K   D     +  + +     L+ R      
Sbjct: 362  NAEIDRLSQPEFFDADDNKAWEKNIHRWCKPGGD----ADIYITHLCNERLKWRFPDEDF 417

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
                H  +  +R+  ELN I  M  +GY LIV DFI W++++ IPVGPGRGS AGS+  Y
Sbjct: 418  KFPAHETNVGKRMYKELNCIRNMNVAGYLLIVWDFINWSREHGIPVGPGRGSAAGSLVTY 477

Query: 389  ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
             + ITDIDPL F LLFERFLNP+R+SMPD D DF    R  VI+YV +KYG E V QIIT
Sbjct: 478  IIGITDIDPLTFDLLFERFLNPERVSMPDIDTDFADRDRGRVIQYVTDKYGKECVGQIIT 537

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----------DPAHPVSLQAIAD--DS 496
            +G L++KA + DV R L +P ++   + KL P                     + D    
Sbjct: 538  YGMLKSKAVITDVARVLGIPPAEAKAITKLFPQRTLNFSLKQAWTGKDKKGNNLEDGYSP 597

Query: 497  R-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
               +    +  S   L +++++LE L R    HA G+VI   P+  L P+YR    D PV
Sbjct: 598  EPLQAMIGSRASYQNLWDVAKRLEDLPRQTGVHACGVVITPTPIYNLAPLYRAAPEDTPV 657

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTT 614
              ++  + E  GL+K DFLGL  L+++Q ++  + Q R +K+ ++ IP DD  T+ LL  
Sbjct: 658  VMYDKHYAEDIGLLKMDFLGLINLSIIQDTVKMVEQNRNIKLVMNKIPIDDKATFELLGK 717

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
              T  +FQ ES GM++ L  ++P  I D+IA+ +LYRPGPID I  +  RKNGKE+I   
Sbjct: 718  GLTTTVFQFESPGMQKYLRELKPTRIFDLIAMNALYRPGPIDQIPHFIARKNGKEEIDCY 777

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            HP ++ +L ET GVI+YQEQVM++AQ+L GYSL  AD +RR M KK+ E+M K +  F  
Sbjct: 778  HPDLEQVLGETYGVIVYQEQVMKLAQILGGYSLGGADNIRRIMAKKMPEKMAKLEPEFFQ 837

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
                 G  K +   +++ +  F  Y FNKSHAAAYA ++YQTA++KTHY  E++AASMT 
Sbjct: 838  KCLDKGYDKAMIQKVWDAVLPFCGYAFNKSHAAAYAYVAYQTAYLKTHYGPEYMAASMTS 897

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHI 853
            +M   E       + ++  I ++ P++NT    F      +I Y LA I+ VG      +
Sbjct: 898  KMGKTEDTVTIILECKRLGIPVLSPNINTSLGVFSANTKGQILYGLAGIRNVGIAVVEDV 957

Query: 854  MEASA-DKPFDSLEDFCSRV---------DSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +        +  + DFC RV             LN++VLE L+ AGALD    SR     
Sbjct: 958  VAERERRGIYKDIFDFCKRVTEYQAAQPEKRPPLNKKVLECLIMAGALDDLPGSRAVQCA 1017

Query: 904  SLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            ++D   + A   ++++     ++F         +    LE+     +      E+ VLG 
Sbjct: 1018 TVDRALEVAMRSQEDKAKGQVSLFDLGGPAAMPNTAEVLEEAEEWTAMEMLNKERSVLGL 1077

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATI--------RGNNIRLAAMVVSKQQKKTRKGS 1013
            + SGHPLD ++P L         E   T          G  IR+       +  +T++G 
Sbjct: 1078 FLSGHPLDEFRPELTGFTSCSLSEDEITRYVGDTVVVGGVVIRM-------RSIETKRGD 1130

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             IG     +   E E  FF
Sbjct: 1131 TIGSGAIQDFQGEIE-MFF 1148



 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 89/438 (20%), Positives = 157/438 (35%), Gaps = 66/438 (15%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAI-----------AITDTNNLFSAL-- 56
           +FVHLQ HS +S+L+ +  L++I           +           A+TD   +F  L  
Sbjct: 2   AFVHLQTHSEFSILQASARLDDI-----------LAAAAAENAPAVALTDHGAMFGILEI 50

Query: 57  -----EFSQKACAAGIQP---IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                E ++K    G+ P   + GC + +D     +          T   + LLV   +G
Sbjct: 51  QTRGKELNKKRKEQGLPPVKTVYGCHIYVDTPSASQKDPT------TFERLTLLVENEKG 104

Query: 109 YQRLIELVSRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
           Y  L+ +VS  Y   +       + L  + E   EG+I + G       +        +A
Sbjct: 105 YYNLLRIVSYRYEDGERWAEIPSVPLETINEF-KEGIIAIAGDYFSRYGQNVASGRDSLA 163

Query: 168 EKRLLTFKKLFG-DRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDY 225
            + +    ++F  D LY+++  +    +   ++  V+LA  +   +VA  +  ++  ED 
Sbjct: 164 LEYMDRLNEIFDHDHLYISVCDNGIPQQKHVNEFNVELAKKYGREVVAVGDVHYIKPEDA 223

Query: 226 EAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
            +H +L  ++   T+   +D+   T   Y +   EMV +F  +P A+ENTV+IA RC+F 
Sbjct: 224 TSHKILRCISLKVTLNGFEDKRFPTEKFYFRTEKEMVELFGHIPGAIENTVKIAERCNFT 283

Query: 285 LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
           ++           K  D+    EE           +   A             R+R    
Sbjct: 284 VKTGIGDEFWPRFKIPDEFLASEE----------YQNIKAIMKAEYDAEYPVVRERELKG 333

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
           +    + K    +       + A  +       R S               D        
Sbjct: 334 VIKDRKKKVKANYCAEKGIAEDALTDADNAEIDRLSQPEFF----------DADDNK--- 380

Query: 405 ERFLNPDRMSMPDFDIDF 422
               N  R   P  D D 
Sbjct: 381 AWEKNIHRWCKPGGDADI 398


>gi|302327802|gb|ADL27003.1| DNA polymerase III, alpha subunit [Fibrobacter succinogenes subsp.
            succinogenes S85]
          Length = 1285

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 297/919 (32%), Positives = 440/919 (47%), Gaps = 69/919 (7%)

Query: 151  SSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELP 210
              G I  A   N+ ++AE+   T K   GD  +    R +  D +  S+         + 
Sbjct: 262  LFGHIPGAI-ENTVKIAERCNFTVKTGIGDEFW---PRFKIPDEFLASE-----EYQNIK 312

Query: 211  LV--ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             +  A  ++ +    + E                KDR +    +Y   +       +D  
Sbjct: 313  AIMKAEYDAEYPVVREREL-----------KGVIKDRKKKVKANYCAEKGIAEDALTDAD 361

Query: 269  EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
             A  + +                      K   D     +  + +     L+ R      
Sbjct: 362  NAEIDRLSQPEFFDADDNKAWEKNIHRWCKPGGD----ADIYITHLCNERLKWRFPDEDF 417

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
                H  +  +R+  ELN I  M  +GY LIV DFI W++++ IPVGPGRGS AGS+  Y
Sbjct: 418  KFPAHETNVGKRMYKELNCIRNMNVAGYLLIVWDFINWSREHGIPVGPGRGSAAGSLVTY 477

Query: 389  ALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
             + ITDIDPL F LLFERFLNP+R+SMPD D DF    R  VI+YV +KYG E V QIIT
Sbjct: 478  IIGITDIDPLTFDLLFERFLNPERVSMPDIDTDFADRDRGRVIQYVTDKYGKECVGQIIT 537

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN----------DPAHPVSLQAIAD--DS 496
            +G L++KA + DV R L +P ++   + KL P                     + D    
Sbjct: 538  YGMLKSKAVITDVARVLGIPPAEAKAITKLFPQRTLNFSLKQAWTGKDKKGNNLEDGYSP 597

Query: 497  R-FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
               +    +  S   L +++++LE L R    HA G+VI   P+  L P+YR    D PV
Sbjct: 598  EPLQAMIGSRASYQNLWDVAKRLEDLPRQTGVHACGVVITPTPIYNLAPLYRAAPEDTPV 657

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTT 614
              ++  + E  GL+K DFLGL  L+++Q ++  + Q R +K+ ++ IP DD  T+ LL  
Sbjct: 658  VMYDKHYAEDIGLLKMDFLGLINLSIIQDTVKMVEQNRNIKLVMNKIPIDDKATFELLGK 717

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
              T  +FQ ES GM++ L  ++P  I D+IA+ +LYRPGPID I  +  RKNGKE+I   
Sbjct: 718  GLTTTVFQFESPGMQKYLRELKPTRIFDLIAMNALYRPGPIDQIPHFIARKNGKEEIDCY 777

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            HP ++ +L ET GVI+YQEQVM++AQ+L GYSL  AD +RR M KK+ E+M K +  F  
Sbjct: 778  HPDLEQVLGETYGVIVYQEQVMKLAQILGGYSLGGADNIRRIMAKKMPEKMAKLEPEFFQ 837

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
                 G  K +   +++ +  F  Y FNKSHAAAYA ++YQTA++KTHY  E++AASMT 
Sbjct: 838  KCLDKGYDKAMIQKVWDAVLPFCGYAFNKSHAAAYAYVAYQTAYLKTHYGPEYMAASMTS 897

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHI 853
            +M   E       + ++  I ++ P++NT    F      +I Y LA I+ VG      +
Sbjct: 898  KMGKTEDTVTIILECKRLGIPVLSPNINTSLGVFSANTKGQILYGLAGIRNVGIAVVEDV 957

Query: 854  MEASA-DKPFDSLEDFCSRV---------DSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +        +  + DFC RV             LN++VLE L+ AGALD    SR     
Sbjct: 958  VAERERRGIYKDIFDFCKRVTEYQAAQPEKRPPLNKKVLECLIMAGALDDLPGSRAVQCA 1017

Query: 904  SLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            ++D   + A   ++++     ++F         +    LE+     +      E+ VLG 
Sbjct: 1018 TVDRALEVAMRSQEDKAKGQVSLFDLGGPAAMPNTAEVLEEAEEWTAMEMLNKERSVLGL 1077

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATI--------RGNNIRLAAMVVSKQQKKTRKGS 1013
            + SGHPLD ++P L         E   T          G  IR+       +  +T++G 
Sbjct: 1078 FLSGHPLDEFRPELTGFTSCSLSEDEITRYVGDTVVVGGVVIRM-------RSIETKRGD 1130

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             IG     +   E E  FF
Sbjct: 1131 TIGSGAIQDFQGEIE-MFF 1148



 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 89/438 (20%), Positives = 157/438 (35%), Gaps = 66/438 (15%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAI-----------AITDTNNLFSAL-- 56
           +FVHLQ HS +S+L+ +  L++I           +           A+TD   +F  L  
Sbjct: 2   AFVHLQTHSEFSILQASARLDDI-----------LAAAAAENAPAVALTDHGAMFGILEI 50

Query: 57  -----EFSQKACAAGIQP---IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
                E ++K    G+ P   + GC + +D     +          T   + LLV   +G
Sbjct: 51  QTRGKELNKKRKEQGLPPVKTVYGCHIYVDTPSASQKDPT------TFERLTLLVENEKG 104

Query: 109 YQRLIELVSRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
           Y  L+ +VS  Y   +       + L  + E   EG+I + G       +        +A
Sbjct: 105 YYNLLRIVSYRYEDGERWAEIPSVPLETINEF-KEGIIAIAGDYFSCYGQNVASGRDSLA 163

Query: 168 EKRLLTFKKLFG-DRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDY 225
            + +    ++F  D LY+++  +    +   ++  V+LA  +   +VA  +  ++  ED 
Sbjct: 164 LEYMDRLNEIFDHDHLYISVCDNGIPQQKHVNEFNVELAKKYGREVVAVGDVHYIKPEDA 223

Query: 226 EAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
            +H +L  ++   T+   +D+   T   Y +   EMV +F  +P A+ENTV+IA RC+F 
Sbjct: 224 TSHKILRCISLKVTLNGFEDKRFPTEKFYFRTEKEMVELFGHIPGAIENTVKIAERCNFT 283

Query: 285 LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
           ++           K  D+    EE           +   A             R+R    
Sbjct: 284 VKTGIGDEFWPRFKIPDEFLASEE----------YQNIKAIMKAEYDAEYPVVRERELKG 333

Query: 345 LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLF 404
           +    + K    +       + A  +       R S               D        
Sbjct: 334 VIKDRKKKVKANYCAEKGIAEDALTDADNAEIDRLSQPEFF----------DADDNK--- 380

Query: 405 ERFLNPDRMSMPDFDIDF 422
               N  R   P  D D 
Sbjct: 381 AWEKNIHRWCKPGGDADI 398


>gi|283769527|ref|ZP_06342423.1| DNA polymerase III, alpha subunit [Bulleidia extructa W1219]
 gi|283103795|gb|EFC05181.1| DNA polymerase III, alpha subunit [Bulleidia extructa W1219]
          Length = 1015

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 232/1044 (22%), Positives = 439/1044 (42%), Gaps = 83/1044 (7%)

Query: 5    LEKSPSFV-------HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE 57
            +++   FV       HL V S YS  +  + L + +         ++ ++D N L     
Sbjct: 1    MKRKSFFVYNKNMFSHLLVTSEYSFYQSTIRLEDYVRYAKKLGYQSLVLSDHNVLSGHDR 60

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            FS+     GIQ I G ++D+ ++++                 ++L    +GYQ LI    
Sbjct: 61   FSKLCAKEGIQAIFGMEMDVQIENSTVP-------------FLILAKDNQGYQELIRYSY 107

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
            ++           +    L +  +  + ++  G  G  D A      ++ E +L  F++ 
Sbjct: 108  QISQTG------SVSYDQL-KNHSGHIHIIVYGEGGLFDEALLKGQREILEIQLTQFQED 160

Query: 178  FGDRLY-VNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
               R + V +  +     R     + Q+  +  +P VA +   +L+  + +   VL  + 
Sbjct: 161  L--RFFDVAISYNENQKFRECNVLLKQVCRSKNIPTVAISKVKYLTSSEAKDFHVLELLG 218

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                +     P +   ++  +       + D  +   +++      +  L          
Sbjct: 219  KKKTIHDPGVPVLVGRYFYSDEEIH-QYYDDEEQERASSLAGECHVNLTL------FQTQ 271

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            + K      K+E+  L+     GL+ R     +      + Y  R+  E N++   +F  
Sbjct: 272  LPKPFFLKDKDEKTYLKQLVFLGLQKR-----LQTKEIPKAYLTRIQMEFNIVCEKRFER 326

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
            YFLIV + I++A+K N+ +GPGRGS  GS+ AYA+ I+ IDPL++ LLFERFLNP+R  M
Sbjct: 327  YFLIVYEAIRYARKQNLLIGPGRGSAVGSLMAYAMGISQIDPLKYGLLFERFLNPNRTKM 386

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD DID     R  ++ Y+Q  YG+E VA I TF SL +   ++ + +   +   +   L
Sbjct: 387  PDIDIDIASQDRPLLLNYLQKIYGYEHVALISTFHSLASVEVIQALCQCYTLKEREARSL 446

Query: 476  CKLIPNDPAH---PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
               +    A             D   + A     +   +  ++QKLEGLY   S H AGI
Sbjct: 447  SLAVKKARAKYKVDNLRVLQERDIALQNAVKQSKACQEVFAMAQKLEGLYTSDSIHPAGI 506

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
            V+ ++ L  +VP+     +     Q++   +E  GLIK DFL L  L  L++ L     +
Sbjct: 507  VLSEKSLLDVVPVM--ESNGFLKIQWDKDTLETHGLIKMDFLSLSNLDFLKELLHQTNLK 564

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                 L     +D ++Y LL    T G+FQL++  +RQ L  ++P+   +++ ++ + RP
Sbjct: 565  IDTPHL---DLEDQDSYALLNRGLTAGLFQLDAPFLRQQLPRLKPNSFMELVNVLGIARP 621

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              + +I  Y   K  +         I  ++K T GV I+QEQVM++   ++G + ++A+ 
Sbjct: 622  QAVQHIPQYVENKRSEYP-----KSIQELVKNTHGVFIFQEQVMRLLVEVTGMNFAQAET 676

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +R+   K+            +    +   +         +    + +GFN SH  AY ++
Sbjct: 677  IRKNGCKEP----------ELIKGLEEKFTAIHPNLWRVIQEFISGFGFNLSHGVAYGLL 726

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            +YQ  ++K H P+ F +  +   + +   +    ++ R   I      +       ++  
Sbjct: 727  AYQMLYIKAHDPLTFYSVLLNQSLKSNSLMATILKEMRLQKIPFYSFDLRCQEAYCRMDK 786

Query: 833  NRIYYSLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKL-NRRVLESLVFAGA 890
              I   L AI  +   T   I +    + P+++     +R+    + + +VLE  +  GA
Sbjct: 787  EGIQLGLMAIPSLRYETIEAIQKDFKENGPYENYFQCVARLSLLGIHSEQVLEC-IKVGA 845

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
            LD FGYSR  L+  L++  +YA     ++  K    F                  E+ ++
Sbjct: 846  LDFFGYSRSALIHQLEDAFRYASLCVVHQQGKKYLNFELVSSPVLQD------EKESLNM 899

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM--VVSKQQKK 1008
            + + EQ VL +     P  + +   +      + ++ +           +  V   ++ +
Sbjct: 900  KRQYEQSVLSYSLQLDPSALVRQ--KNHWCLPFLKTWSYQPDQ----IGLATVTQIKEHQ 953

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
             + G  + +V   + + + E   F
Sbjct: 954  DKNGHYMAFVRIEDESGQLEVLIF 977


>gi|163743759|ref|ZP_02151132.1| DNA polymerase III, alpha subunit, putative [Phaeobacter
            gallaeciensis 2.10]
 gi|161382908|gb|EDQ07304.1| DNA polymerase III, alpha subunit, putative [Phaeobacter
            gallaeciensis 2.10]
          Length = 806

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 219/832 (26%), Positives = 362/832 (43%), Gaps = 45/832 (5%)

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
            +VA  + L       +  DVL  +  +  +     R     +  LK  ++M  IF D P 
Sbjct: 1    MVAVGDVLMHRANRRQLADVLTCMRENINIDDIGTRALPNAERRLKAGADMARIFRDHPA 60

Query: 270  ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            AL  T EIA RC+F L   +           +   +  ++ L   A  GL+ R   G   
Sbjct: 61   ALRRTAEIANRCNFDLSELSYEY-----PHEEAEGETPQDRLERLAQEGLKRRYPDG--- 112

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                     + ++ EL+ +  ++F  YFL V D +Q+AK   I    GRGS A S+  Y 
Sbjct: 113  ---PPDRAIKLMEKELSAVKDLEFPAYFLTVHDIVQFAKSKGIL-CQGRGSAANSILCYL 168

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L ITD+ P   +++FERF++  R   PD D+DF  +RR+EVI+++  KYG  R     T 
Sbjct: 169  LGITDVSPDMIAMVFERFVSKHRGEPPDIDVDFEHERREEVIQWIYQKYGRHRAGLCATV 228

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
               + + A+R+VG+ + +       L   I       V L  I +        L D  + 
Sbjct: 229  IHFRTRVAIREVGKVMGLSQDVTAGLSGQIWGMSNGSVDLDRIRE----LGLNLEDRRLM 284

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            + + +  ++ G  RH S H  G VI    L +L P+      D  V  ++   I+   ++
Sbjct: 285  QTIRLIGEIIGFPRHLSQHVGGFVITSGRLDELAPIENAAMEDRTVICWDKDDIDALRIL 344

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRGVKVD-LSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
            K D L L  LT ++K+   + Q       ++ IP  D  TY +L     +G+FQ+ES   
Sbjct: 345  KVDILALGMLTCIRKAFALMQQHENITHSIATIPQKDEATYDMLCAADAVGVFQVESRAQ 404

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQ 686
               L  M+P    D++  V++ RPGPI   +   Y  R+NG EK     P ++ + + T+
Sbjct: 405  MNFLPRMRPRKFYDLVIEVAIVRPGPIQGDMVRPYIRRRNGLEKSDPFGPELEQVTRRTE 464

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTI 745
            GV ++QEQ +QIA + +G+S  EAD LRR++    +   + K +++FI+G  KN  S+ I
Sbjct: 465  GVPLFQEQALQIAVVGAGFSAEEADHLRRSLASFRRMGTIGKYRDKFIAGMLKNNYSREI 524

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
            A   F  +  FADYGF +SHAAA+A+++Y +AW+K H+P  F  A +  +        + 
Sbjct: 525  AERCFGQIEGFADYGFPESHAAAFAMLAYVSAWLKCHHPAVFACALLNSQPMGFYAPAQI 584

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADK 860
             +D R   I++ P  VN    D  +         +      IKG     A  I+ A  + 
Sbjct: 585  VRDVRDHGIEVRPICVNQSQWDNSLERRPDGTLALRLGFRQIKGFKEDDAGWIIAARGNG 644

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             +   E    R     L    LE L  A A    G SR   L  + +I   A        
Sbjct: 645  -YIDPEHLWLRA---GLAPTALERLAEADAFSSMGISRRDALWQVKSITTPA-------- 692

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                 +F  +    +           +       +   +      HP+++ +P L  +  
Sbjct: 693  --PLPLFNDQLDGEAINEPNVMLPRMHLGEEVVEDYVSMRLSLRAHPMELLRPTLPGL-- 748

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                + +       + +  +V+++Q+  T  G  + ++T  +         +
Sbjct: 749  -TCNDQLIKAPLQRVSVGGLVITRQRPGTASG--VIFLTLEDETGVCNVVVW 797


>gi|78044029|ref|YP_359806.1| DNA polymerase III subunit alpha [Carboxydothermus hydrogenoformans
            Z-2901]
 gi|77996144|gb|ABB15043.1| DNA polymerase III, alpha subunit [Carboxydothermus hydrogenoformans
            Z-2901]
          Length = 964

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 296/1026 (28%), Positives = 495/1026 (48%), Gaps = 107/1026 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V L + + YS LE ++ L+ +++K A     A+ I DT NLF A +    A    ++ +
Sbjct: 4    YVPLNIKTGYSFLESSIKLDGLMEKTARLGLKAVGIADT-NLFGAAKAFFAAKNFNLKLL 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G ++                       + L     EGY+ L+   ++     +      
Sbjct: 63   LGLEV-----------------KSEAGPLWLYARDNEGYKFLVRAATQ-----KYFGKEV 100

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRH 189
            + L+ + E    GLI+L G                   K +L FK+ FGD  Y+      
Sbjct: 101  LSLAEILE--ARGLIILGG------AEFLAAG-----LKNVLNFKEAFGDDFYLLAKVDD 147

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               +      ++ +A  + L +  + N  FL +  Y  + +L A+ ++  + Q  + R +
Sbjct: 148  LLTNPENIRALLAIAKKYRLKIAGSPNPRFLEKNHYFFYRLLCAMKNNVTLDQ-IKKRTS 206

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P  Y  + +EM  IF+ +  +L+ T+EIA +           LP F          E++ 
Sbjct: 207  PYAYYLSPNEMAKIFAPINHSLKTTLEIAEKVGDFFPGDDLKLPEFTCP------GEKDE 260

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR   + G            G  +++ ++RL++EL +I R+  +GYFLIV D +++++ 
Sbjct: 261  YLRKLCLEGAY-------ARYGRISREVKERLNYELEIIKRLGLAGYFLIVHDLVRFSRS 313

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
             ++ +GPGRGS AGS+  Y L +T++DPL+  LLFERFLNP R  +PD D+DF    R++
Sbjct: 314  QDLALGPGRGSAAGSLVLYLLGVTEVDPLKHGLLFERFLNPGRKVLPDVDLDFGHLDREK 373

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VIRY+  KYG + VA I T  +  A+ A+R+V +AL  P   ++++  L+P      +  
Sbjct: 374  VIRYLFQKYGDDGVAHIGTVITFAARGAVREVAKALGYPEPLLNKITPLLPAFGGSSIEK 433

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
               A     R+A    P + +LL +++  EG  RH S HA+G+V+  R   + +P+    
Sbjct: 434  AVRAL-PEVRKALED-PVMRKLLTLARFFEGHPRHFSVHASGLVVARREDLEQIPLA-SS 490

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
                 +TQF+   +E+ G +K D LGL+ LT++ +S               IP +D ET+
Sbjct: 491  FRGEKITQFDKDDVERLGFLKVDLLGLRLLTVVHRSRRSA----------SIPLNDGETW 540

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKNG 667
              +    T+G FQLES GMR  L  + P  IE++  +++L+RPGP++   +  Y   K+ 
Sbjct: 541  KRIQKAQTIGCFQLESDGMRYYLGKVAPRNIEELAQVLALFRPGPLESGQVDNYLLAKHQ 600

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            K   V  HP + P+L+E+ G+++YQEQV++IA L++G+ L+++D LRRAM K  ++ M +
Sbjct: 601  KAPPVYPHPALKPVLEESHGLVLYQEQVLKIAALVAGFDLAKSDDLRRAMSKHDRKIMAE 660

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             KE F+ GA KNG S   A  IF LL  FA YGFNK+H  +YA ++Y + ++ TH+P  +
Sbjct: 661  LKEEFMMGAVKNGYSAADAEKIFSLLQNFAGYGFNKAHGVSYAYLAYYSTFLITHWPKTY 720

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
                +  +         + ++A +  I+I+ P +N     F    + I      I+GVG 
Sbjct: 721  FTLLLNSD-GGFYPPSFYLREAGRRGIKILLPDINESQYGFTEVKDGIRIGFKDIEGVGP 779

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              A  I+E    +P+ S  DF  R   K L+   + +L+ AGA D FG SR  LL  L+ 
Sbjct: 780  KAASIILEGRT-RPYTSFWDFWQRAGHK-LSVETIRNLILAGAFDGFGVSRESLLYCLEV 837

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
             +                +F    G F++      FS        + E+   G Y     
Sbjct: 838  YK----------------LFKPIPGLFAE----PNFS-------LKKEKEA-GDYL---- 865

Query: 968  LDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
                K   + +G+K + +  A +   G  + +   V   +++ TRKG     +T     +
Sbjct: 866  ----KKAQKVIGVKFWLDLEAKVEKTGEGLIITGEVTFGRRRYTRKGEPFLTLTLENRQE 921

Query: 1026 EYEANF 1031
             YE   
Sbjct: 922  FYEVLV 927


>gi|317125081|ref|YP_004099193.1| DNA polymerase III subunit alpha [Intrasporangium calvum DSM 43043]
 gi|315589169|gb|ADU48466.1| DNA polymerase III, alpha subunit [Intrasporangium calvum DSM
           43043]
          Length = 1391

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 266/1010 (26%), Positives = 438/1010 (43%), Gaps = 137/1010 (13%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +  S  FVHL V S YS+  G      ++++ AA  QPA+A+TD + L+ A++F     A
Sbjct: 1   MTDS--FVHLHVASGYSMRYGTAKPEQLVERAAAFGQPALALTDRDGLYGAVKFVTACLA 58

Query: 65  AGIQPIIGCQLDIDMQ----------------DNLKMTNQGKTPFPTVPSIVLLVSTAE- 107
             + PI+G  L +                           G    P +P + +L   +  
Sbjct: 59  HDVAPILGVDLALGPDPIEPRRYPGATGAVARSTRTPVRGGALVDPRLPRVTVLARGSRT 118

Query: 108 ------GYQRLIELVSRMYLLD----------------------------------QGKQ 127
                 G+  L   V+  +L                                      + 
Sbjct: 119 GLPPGVGWAALCRFVTDTHLSGERGNPVTTARLLAEHANPAPEDPGPGKRAQRHTAGDEG 178

Query: 128 SVRICLSWLQEIGTEG-----------------------LIMLTGGSSGPIDRAFFFNSS 164
           + R  ++   E    G                       L++L G     + RA      
Sbjct: 179 TPRERVAESVEPARSGKSVRPGRAVKLVRSGRTRSAPSRLVVLLG-PDSDVGRAVLAKKH 237

Query: 165 QVAEKRLLTFKKLFG-DRLYVNLQRHRGYDRY-----RESQVVQLAYTHELPLVATNNSL 218
            +A   L  ++ L   D L V +  H G +       +  +++ LA    +P V T    
Sbjct: 238 SLARALLEQWRDLLPRDGLVVEIVCHGGPEDLPGSLGQAGRMLALAGEVGVPTVITAAVR 297

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE--------- 269
               +D    DVL A      + ++   RVT   +L     M ++  D+ +         
Sbjct: 298 HADPQDAAIVDVLDAARRLVALDERHLDRVTTAGHLSPTPVMHALARDVVQVSGPGLVGG 357

Query: 270 -------ALENTVEIARRCSFILQVHAPILPRFIEKECDDI------QKEEENELRNKAV 316
                  A E         +  +Q     L        +            +  L  +  
Sbjct: 358 GPLVRQLAAELVARTTALATECIQDPRADLGIGSVHLPEPGVLGIRDGVSPQAVLARRCR 417

Query: 317 AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
             +  R      ++         RL+ EL VI  + ++ YFL VA      ++  + V  
Sbjct: 418 ESIATRYPDHGTSELA---AVSARLEDELQVIETLGYATYFLTVAQVCDLIREMGVRVA- 473

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            RGSGAGSV  Y L I+ ++P+R  LL ERF +P R  +PD DID    RR E+   V  
Sbjct: 474 ARGSGAGSVVNYLLGISGVEPMRHGLLMERFCSPLRAELPDIDIDVESARRTEIYERVLG 533

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            +G ERV  +    + + + A+RD G AL +P  ++D + K  P+  A  V   AIA+  
Sbjct: 534 HFGGERVTCVSMMDTYRVRHAIRDAGAALGLPPQEIDAMAKAFPHIAARNV-RNAIAELP 592

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
             R + L  P +  + +I ++L+GL RH + H  G+V+ D  L    P+        P++
Sbjct: 593 ELRASGLDVPRLQLMYDIVERLDGLPRHIALHPCGVVLSDSGLLDRTPVE-ASWLGFPMS 651

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----RGVKVDLSLIPFDDHETYHLL 612
           QF+   +E  GL+K D LG++  + + +++  + +    +    D + +PFDD ET+ L+
Sbjct: 652 QFDKDDVEALGLLKLDILGIRMQSAMAQAVAEVERVDGTKVDLDDEASVPFDDAETFELI 711

Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEK 670
            +  TLG FQ+ES G R+ +    P   EDII  +SL+RPGP+ + +   + N + G ++
Sbjct: 712 RSTRTLGCFQIESPGQRELIGKFGPQTFEDIIIDISLFRPGPVKSDMIVPFLNARQGWKE 771

Query: 671 IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
              +HP + P L+ET+GV+++ EQV+++    +G +L+EAD +RRA+G    +  +K ++
Sbjct: 772 PTYLHPTLVPALQETEGVVVFHEQVLKLVAETTGVTLAEADEVRRALGS--PQGQEKVEK 829

Query: 731 RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            +   A   G S+     I+++L  FA +GF K+HAAA+A+ +YQ+AW+KTH+P  FLA 
Sbjct: 830 WWRPAALARGYSREDVDRIWDVLKAFASFGFCKAHAAAFALPTYQSAWLKTHHPAAFLAG 889

Query: 791 SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-----DNRIYYSLAAIKGV 845
            +T +     K      DAR F I I+   VN    +++       D  I  SLA ++G+
Sbjct: 890 VLTHDPGMYPKRLIL-DDARAFGITILGLDVNVSTGEYRFERTEDGDEAIRLSLADVRGI 948

Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                  I+ A   +P+ SL DF  R    +++R   E LV AGA D   
Sbjct: 949 SDLEIAGIVAA---QPYASLSDFWQRA---RVSRPTAERLVLAGAFDSLH 992



 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 1/127 (0%)

Query: 907  NIQKYAQWVEKNRTNKHEN-IFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
                 AQ               A + G                  R   E  VLG   SG
Sbjct: 1113 RALAAAQSRAPAPVPSQVPVQLALDLGDTPRLTATSGLPEMTGPERVRAELEVLGLDASG 1172

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            H +D Y+P+L  +G+   +E ++   G  + +A + V+ Q    R G R+ ++T  +   
Sbjct: 1173 HVVDFYRPMLDALGVARADELLSGRSGREVWVAGVKVATQTPPIRSGRRVVFLTLDDATG 1232

Query: 1026 EYEANFF 1032
              +  FF
Sbjct: 1233 PVDLTFF 1239


>gi|331270939|ref|YP_004385650.1| DNA polymerase III subunit alpha [Clostridium botulinum BKT015925]
 gi|329127331|gb|AEB77275.1| DNA polymerase III, alpha subunit [Clostridium botulinum BKT015925]
          Length = 1171

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 276/920 (30%), Positives = 441/920 (47%), Gaps = 72/920 (7%)

Query: 23  LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82
           ++G  +   ILD+       + AITD    ++   F++       + + G +L       
Sbjct: 1   MDGMGTPKEILDRCDELNIKSYAITDHGTEYALYYFAELQEKYKTKILYGIELYEAYD-- 58

Query: 83  LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142
               +  + P      ++ +     G Q L  L +     +      RI L+ L+E   +
Sbjct: 59  ----HTVQDPNNKYFHLLTIAKNQSGIQALHRLTTMG-EFEGKYFKPRIDLNQLKEF-KD 112

Query: 143 GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQVV 201
            LI+ +   +G I++A      + A++  L +K++F D  Y+ LQ H   D+     +++
Sbjct: 113 DLIIGSACLAGKINKATT---YEQAKQYALEYKEIFSDNFYLELQAHTSEDQIKANKRLM 169

Query: 202 QLAYTHELPLVATNNSLFLSEEDYEAHDVLM------AVAHSTVVSQKDRPRVTPDHYLK 255
           +L Y   +P + T++S ++ +ED E H   +      A   +T     D    + D   +
Sbjct: 170 KLHYDTNIPYIITSDSHYVKKEDKENHANFVNVNRKNADVTTTGEIYDDCYIHSTDEMYE 229

Query: 256 NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
              +      ++   L+NT +IA  C+  +Q H P+LP        +  K EE       
Sbjct: 230 IMFKSELTEDEITIGLQNTNKIADICNGTIQFHEPVLPEVKIP---NEYKSEEEYFMALI 286

Query: 316 VAGLEVRLAQGAIAKG--YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
             G + R     I     +  QDY+QR+  E NVI +M++  Y LIVAD++QWA    IP
Sbjct: 287 TKGWKDRNMDEQIKNDLLHTEQDYKQRVLHEYNVIKQMEYISYHLIVADYMQWAVNQRIP 346

Query: 374 VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
             P RGS  GS+ AY L IT+I+PL++ LLFER+LNP+R+S+PD D DF   RR+EV +Y
Sbjct: 347 TAPARGSAGGSLIAYLLKITNINPLKYDLLFERYLNPERVSLPDIDSDFSSGRREEVFKY 406

Query: 434 VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
           +Q  YG E VAQII F     K A++D G+ +++P   V+ + K    D     S+Q   
Sbjct: 407 LQQTYGEEYVAQIINFSKYTPKVAIQDAGKMIKVPIKDVN-VIKEFMQDDTIDDSIQNAK 465

Query: 494 DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
           ++ +  +   + P +  L   ++  EG  +  ST+A G VI  +P+ Q   M +    + 
Sbjct: 466 NNKKLIDLLNSYPEMLSL---AKSFEGRVKTTSTNACGTVISSKPIYQYCGMKKGDNDEQ 522

Query: 554 PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT 613
            +   +    EK G++K D LG   L ++ + +   A        + IP DD ETY    
Sbjct: 523 LLQV-DKVITEKLGMVKCDILGTTVLQIIDEVMKM-ADMDFYDLYTKIPLDDKETYEFFK 580

Query: 614 TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
                G+FQL S  M +    +QP  IEDI   +S YRPG +  I    NRK GKE IV 
Sbjct: 581 KGLYYGVFQLGSYNMTKFFMKLQPKSIEDICLGISAYRPGSMKYIDDIINRKEGKEPIVY 640

Query: 674 IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE--------- 724
            H +++P+LK T G+ +YQEQVMQ+ Q + G+S ++AD++RR M KK  +          
Sbjct: 641 DHEVLEPILKPTYGICVYQEQVMQVLQAMGGFSFAQADLVRRGMAKKKAQYVLGQRNNFI 700

Query: 725 ------------------------MDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
                                    D +    I GA   GI   IA  +F+ L  FA YG
Sbjct: 701 YGLVEFTIDGTRCTTTYELAKEYLNDIEYTVVIEGAIHKGIEIKIAKKVFDDLEDFALYG 760

Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
           FNKSH  AYA+++Y TA++K HYP  F+   ++   D +E I ++    +   ++++ P+
Sbjct: 761 FNKSHGLAYALLAYYTAYLKCHYPTYFMKTILSHAKDGME-IAQYLTQCKDLCVKVVHPN 819

Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV------DS 874
           +N   + F V +  I Y + ++  VG  T R IM      P+ S EDF ++       D 
Sbjct: 820 INESNLGFSVYNGSILYGIGSLYNVGEPTTRQIMNKR---PYTSFEDFINKNVNNIAEDE 876

Query: 875 KKLNRRVLESLVFAGALDCF 894
            K+++  L SL+ +G  D  
Sbjct: 877 IKIDKSALISLINSGCFDGL 896


>gi|162447106|ref|YP_001620238.1| DNA polymerase III subunit alpha [Acholeplasma laidlawii PG-8A]
 gi|161985213|gb|ABX80862.1| DNA polymerase III alpha subunit [Acholeplasma laidlawii PG-8A]
          Length = 982

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 300/1025 (29%), Positives = 475/1025 (46%), Gaps = 96/1025 (9%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L   SSYS+L+  L L  I      +    +AITD NNL    +    +    I  I+G 
Sbjct: 8    LYTQSSYSILKSTLHLETIFKHAKQENLDFVAITDDNNLHGLYKALVLSKKYQIPLILG- 66

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                          +          +++     E  + LIEL S         ++  I  
Sbjct: 67   ------------FQKTFKVLGYDLDLLIYAQNDEALKSLIELNSL------TARTPDIPF 108

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
                ++  + +I+L   +   I + +    S+   + + +  K      Y+ L     ++
Sbjct: 109  ESCVQLLNKLIIVL-PSTQSFIYQHY--EMSERIYEVISSLHKSLK-NFYLGLGNATDFE 164

Query: 194  -RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
                   + ++A   +L  + T    +  EE+   +D++     +T+   + +      H
Sbjct: 165  VDKITPILKKIALNEDLKYLPTYQQSYEDEENKTTYDIV-----NTIKDSQFKSLNVSMH 219

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
             L     +     +            R     L     +     +   +         L 
Sbjct: 220  LLSKNELVKKYEQEKNIFKNVDAVFGRVNYTYLDNTQSLPVFPTKDNVESHI-----YLY 274

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
              A  GLE RL    +     + DY QRL+ EL VI +M +  YFLIV DF+++AK N+I
Sbjct: 275  ALAHKGLEKRLENSGVR---KSTDYIQRLNEELEVIHQMGYDDYFLIVYDFVRFAKTNDI 331

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             VGPGRGS AGS+ AY L IT++DP+++ LLFERFLN DR SMPD D+DF   +RD VI 
Sbjct: 332  LVGPGRGSAAGSLVAYCLGITEVDPIQYDLLFERFLNIDRKSMPDIDLDFPDVKRDLVID 391

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            YV+ KYG   V  + TF +L  K ++RD+ R + +   +++ +                 
Sbjct: 392  YVKEKYGLNHVVTMTTFTNLTTKTSMRDIARQMNLSQERINAIIASHTKG---------- 441

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
                       +D    +L++++  +EG+ R   TH AGI++  + L+ LVP+      D
Sbjct: 442  -------ILDESDREAQKLVKVASTIEGIPRQTGTHPAGIILSKQDLTTLVPLMNGP-KD 493

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
            +  +Q     +E  G +K DFLGLK LT+++  L     +     LS +P DD +T+ LL
Sbjct: 494  IYQSQLEASDLESLGFLKIDFLGLKNLTMIEDILKLEQNKL---KLSDMPLDDKKTFELL 550

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +     G+FQLES GMR  +  ++P   EDI+AL++L+RPGP+  I  Y  R++G     
Sbjct: 551  SNADVEGVFQLESQGMRNVIRKLRPSHFEDIVALLALFRPGPMQFIDDYIKRRHGDTYEK 610

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
                 ID +LK T G+I+YQEQ+M+I Q+ +GY LSEAD++RRA+ KK ++ +D++K RF
Sbjct: 611  LDSD-IDEILKPTYGIIVYQEQIMKIFQVYAGYKLSEADIIRRAISKKNRDMIDREKARF 669

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            I  + +       A  I+  + KFADYGFN+SH+ AYA I+Y  A++KTHY   F++  M
Sbjct: 670  IEKSVRLNRDAETAEKIYNHIEKFADYGFNRSHSVAYAFIAYYMAYLKTHYYASFISVLM 729

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
            +    N   +K+   DA+   + + PP++N   +DF    + I   L  IKG+G TTA+ 
Sbjct: 730  SQNTSNTAYLKELVLDAQNKGLVVYPPNINLSKLDFIPYKSGILAPLTMIKGIGLTTAKK 789

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            I+E    +PFDS + F  +V  K LN + +E L+ A ALD FG +  +LL          
Sbjct: 790  IVEL---QPFDSYDHFKEKV-FKVLNEKSIEILIHANALDVFGLNHKELL---------- 835

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
                        N+       F D     +      +   E E  VLGF           
Sbjct: 836  ---------DQNNLNQTGFEQFLDDYKKTRLEELPFNTLKEKEIEVLGFNL--------- 877

Query: 973  PILRKMGIKGYEESVATI----RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
              L+   +    E+        +  +IR   M+ S +   T+KG  + ++TFS      +
Sbjct: 878  KYLKDEVLIRLNETHKLKPLSLKEQSIRTIGMIESVKIITTKKGDEMAFITFSNGI-SLD 936

Query: 1029 ANFFP 1033
               FP
Sbjct: 937  LTVFP 941


>gi|325125570|gb|ADY84900.1| DNA polymerase III alpha-chain [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 1164

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 281/992 (28%), Positives = 464/992 (46%), Gaps = 53/992 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           LQ  S+ ++L   +  ++++         A+A+TD N  F   +F Q+A  AGI+P++G 
Sbjct: 6   LQTISANTILASPMKTDDLVQGAKERGYSAVALTDINVTFGLADFYQEAVKAGIKPLLGL 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           Q             +G         +V L  + +GY+ L+ L S + +           L
Sbjct: 66  QGRF----------KGIELEEAEYDLVFLAQSQKGYKSLMRLSSFLNIASGDLAGPAPSL 115

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRA--FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
           + L E+ ++  +++  G +  + +      +  +  +K      K     LY+ +     
Sbjct: 116 ADLPEL-SDLTVIVPAGLTSELRQLNKLRNSGEEYVKKLQAFLPKGLP--LYLGVYPAES 172

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                ++ V +LA    LP+    +  +L   D     VL A+    V+ + +   +   
Sbjct: 173 A-AAYDAYVKKLAEISALPITVVEDVRYLDPGDQFLCKVLQAIKERRVLDEHELTLMAQG 231

Query: 252 HYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                 R   V   +     LE  +  + + +   Q   P     +           +  
Sbjct: 232 QGSHWLRPAPVLEDACREMGLEEALANSGKIAASCQAKIPFKEPQLPVFPQATGLSSDQY 291

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           L   A AGLE    +  I        Y  RL  EL VI +M F+ YFLIV D + + ++ 
Sbjct: 292 LEKLAFAGLEKLGLRQGI--------YHARLQKELAVIQQMGFADYFLIVGDIVNYCRQK 343

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
              VGPGRGS AGS+ AYAL IT IDPL++ LLFERFLNP R  MPD D+DF    R   
Sbjct: 344 GALVGPGRGSAAGSLVAYALGITQIDPLKYDLLFERFLNPARADMPDIDLDFTTSGRKLA 403

Query: 431 IRYVQNKYG--------HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
             YVQ KYG         + VA+I+   +++AK+ L   G+   +    + RL +     
Sbjct: 404 FAYVQEKYGAKARFGEGSDLVARILALTTMKAKSVLERTGQVFGLTLPAIARLKQA---- 459

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +L      + F+    A P    L + + +LEGL     THA G+VI + PLS+ 
Sbjct: 460 MGAAKTLAEAGQQAEFKALVAASPLTRLLYQTAARLEGLPEDTGTHAPGLVISEEPLSRQ 519

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
           + +     + L   +   K++EK GL+K DFL L  L LL+  L  + +    +DL+ +P
Sbjct: 520 IGLMTGKEAPLWTVEQTKKYVEKYGLLKIDFLTLDNLELLEGVLAEIQKSSGPLDLTRLP 579

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            DD +T  L     T  IFQ  SSGM++ L  +QP   +D+   V+LYRPGPI +I +Y 
Sbjct: 580 LDDPDTLRLFARGETQQIFQFNSSGMQEVLRKIQPRTFDDLSVAVALYRPGPIASIPLYV 639

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            RKNG   +    P +  +L  T G+ +YQEQVMQ A++ +G+SL+EAD+ R A+ KK  
Sbjct: 640 ARKNGTSPVQYPDPSLKEVLGPTYGIFVYQEQVMQTARIFAGFSLAEADIFRNAISKKQA 699

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             + ++K++F++GA + G S+  A  ++ L+  FA+YGFN SHA AYA+++Y  A++  H
Sbjct: 700 GLLAEEKDKFVAGAVRKGHSRQAAEAVYALIEPFANYGFNHSHAVAYALLAYWQAFLSVH 759

Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
           +P EF    +       ++     + AR+  ++I+ P +N    + ++ + RIY  L  I
Sbjct: 760 FPREFYLEKL--RASRGKEKGAIIRQARKAGVEILGPDINLSRAEARLFEGRIYLGLKDI 817

Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            G+       ++     +P  S   F  ++D+K+L  + L  L+ AG  D    +R  LL
Sbjct: 818 MGITPAFLDQLLAL--KRPVTSFTAFLRQLDTKELKEKQLVPLIEAGLFDQVSPNRASLL 875

Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
            +  N+   A+  +K+     + + A E          E   +  ++ +   E+R +GF 
Sbjct: 876 VNCGNMLNTARLSQKSLVL-QDFLAAKE----------ENVPMPTAAEKVAMEERAMGFA 924

Query: 963 FSGHPLDVYKPIL-RKMGIKGYEESVATIRGN 993
            +  PL++    L ++ G K +        G 
Sbjct: 925 VTASPLEIAGKALAKRYGAKPFAGLALNETGQ 956


>gi|254365986|ref|ZP_04982031.1| DNA polymerase III (alpha chain) dnaE2 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis str. Haarlem]
 gi|134151499|gb|EBA43544.1| DNA polymerase III (alpha chain) dnaE2 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis str. Haarlem]
          Length = 1090

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 236/839 (28%), Positives = 397/839 (47%), Gaps = 54/839 (6%)

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVS 262
            A    + +VAT  + F           + A+     +             +L++  EM  
Sbjct: 246  APRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAAGWLAPLGGAHLRSGEEMAR 305

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
            +F+  PEA+    E+  RC+F LQ+ AP LP F   +       E++ LR+  +AG   R
Sbjct: 306  LFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPDG----HTEDSWLRSLVMAGARER 361

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                  A   ++Q     ++ EL VIA+++F GYFL+V D  ++ + N+I    GRGS A
Sbjct: 362  YGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDITRFCRDNDIL-CQGRGSAA 415

Query: 383  GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
             S   YAL +T +DP+   LLFERFL+P R   PD DID   D+R++VI+YV +KYG + 
Sbjct: 416  NSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIESDQREKVIQYVYHKYGRDY 475

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
             AQ+    + + ++A+RD+ RAL     Q D   K + +       +  I +        
Sbjct: 476  AAQVANVITYRGRSAVRDMARALGFSPGQQDAWSKQVSHWTGQADDVDGIPE-------- 527

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
                   ++++++ ++  L RH   H+ G+VI DRP++ + P+     ++  V Q++   
Sbjct: 528  -------QVIDLATQIRNLPRHLGIHSGGMVICDRPIADVCPVEWARMANRSVLQWDKDD 580

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIF 621
                GL+KFD LGL  L+ L  + D +A+   ++VDL+ +   +   Y +L    ++G+F
Sbjct: 581  CAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIEVDLARLDLSEPAVYEMLARADSVGVF 640

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLID 679
            Q+ES      L  ++P    D++  V+L RPGPI   ++  Y  R+NG + ++  HP + 
Sbjct: 641  QVESRAQMATLPRLKPRVFYDLVVEVALIRPGPIQGGSVHPYIRRRNGVDPVIYEHPSMA 700

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASK 738
            P L++T GV ++QEQ+MQ+A   +G+S +EAD LRRAM  K+  E M + + RF  G   
Sbjct: 701  PALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQLRRAMGSKRSTERMRRLRGRFYDGMRA 760

Query: 739  -NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
             +G    +   I+E L  FA++GF +SHA ++A + + +AW K H+P  F AA +  +  
Sbjct: 761  LHGAPDEVIDRIYEKLEAFANFGFPESHALSFASLVFYSAWFKLHHPAAFCAALLRAQPM 820

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--DNRIYYSLAAIKGVGTTTARHIME 855
                 +    DAR+  + +  P VN              +   L A++ +G   A  ++ 
Sbjct: 821  GFYSPQSLVADARRHGVAVHGPCVNASLAHATCENAGTEVRLGLGAVRYLGAELAEKLVA 880

Query: 856  AS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
               A+ PF SL D  SRV   +L+   +E+L  AGAL CFG SR +              
Sbjct: 881  ERTANGPFTSLPDLTSRV---QLSVPQVEALATAGALGCFGMSRRE----------ALWA 927

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
                 T + + +      +      +      +       +    G     +P    +  
Sbjct: 928  AGAAATGRPDRLPGVGSSS-----HIPALPGMSELELAAADVWATGVSPDSYPTQFLRAD 982

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            L  MG+   E   +   G+ + +A  V  +Q+  T +G  + ++   +          P
Sbjct: 983  LDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQG--VTFINLEDETGMVNVLCTP 1039



 Score =  152 bits (384), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 6/108 (5%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 54  SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 113

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
           ++ + G +L +        T + + P P  P +++L    EGY+RL  
Sbjct: 114 VRTVFGAELSL------GATARTERPDPPGPHLLVLARGPEGYRRLSR 155


>gi|185178880|ref|ZP_02964653.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 5
            str. ATCC 27817]
 gi|188518258|ref|ZP_03003786.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 11
            str. ATCC 33695]
 gi|195867837|ref|ZP_03079837.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 9
            str. ATCC 33175]
 gi|198273830|ref|ZP_03206364.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 4
            str. ATCC 27816]
 gi|225550623|ref|ZP_03771572.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 2
            str. ATCC 27814]
 gi|225551185|ref|ZP_03772131.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 8
            str. ATCC 27618]
 gi|184209132|gb|EDU06175.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 5
            str. ATCC 27817]
 gi|188998262|gb|EDU67359.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 11
            str. ATCC 33695]
 gi|195660534|gb|EDX53791.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 9
            str. ATCC 33175]
 gi|198249585|gb|EDY74367.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 4
            str. ATCC 27816]
 gi|225379000|gb|EEH01365.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 8
            str. ATCC 27618]
 gi|225379777|gb|EEH02139.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 2
            str. ATCC 27814]
          Length = 969

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 302/1009 (29%), Positives = 488/1009 (48%), Gaps = 102/1009 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F++L VHS YSLL  ALS+++++     + QP + +TD NN++  +EF  KA A  + PI
Sbjct: 2    FINLNVHSYYSLLNSALSIDDLIQHALDNNQPYVCLTDLNNMYGCIEFYDKAKAHNLIPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +                       ++V       GY +LI+  S +           
Sbjct: 62   IGLEF-----------------EYQNTTLVAYAKNYNGYLKLIKWSSWIMTNTTF----- 99

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
                 +QE   + +I+      G +                     +F +   Y      
Sbjct: 100  ----IIQEDFDDLIIV---CKKGGL---------------------VFENPNFY------ 125

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                + +               +A  +  +  E D      ++A+ +   +         
Sbjct: 126  ----QAQNQNASN--------AIALQSVFYAQENDKTVFLAMLAIKNDLKLDDFIDCHEF 173

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              +Y  N  E  S+FS         ++   +    LQV    LP  I     +       
Sbjct: 174  DKNYFLNDHEAQSLFS------TIALDNLNKVLNELQVEIHDLPINIPVYDKNNLTVSSE 227

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L+   ++GL+ RL       G   + Y QRL +EL+VI+  +F  YFLIV DFI +AK 
Sbjct: 228  ILKQLCISGLKQRLNAH---DGQVKKAYAQRLKYELDVISEKQFDDYFLIVYDFINYAKS 284

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I VGPGRGS AGS+ AY L ITDIDP++ +L+FERFLNP R SMPD D D   ++RD+
Sbjct: 285  NGIIVGPGRGSAAGSLVAYCLYITDIDPIKHNLIFERFLNPTRKSMPDIDTDIMDEKRDQ 344

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI Y+  KYG++ VA I+TF  L+AK ALRDVGR L +    +D++CK I  D    +  
Sbjct: 345  VIEYLFEKYGNDHVAYIVTFQRLKAKMALRDVGRILGIDLKVIDKICKNIKTDYDEDID- 403

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             AI   +  +E  +       L EIS+KL    R   THAAGI++ +  ++ ++P+    
Sbjct: 404  LAIKKSATLKEMYVL---HKELFEISKKLIHAPRQIGTHAAGIILSNSSITNIIPIQLG- 459

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHET 608
             +D P++Q++M+++E+ GLIK D LGLK LT++   L  + +    K+DL  I ++D   
Sbjct: 460  INDRPLSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKMIYKTQNKKIDLFNIDYNDKFV 519

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            +  L    T GIFQLES GM++ L  ++P  IEDI  + +L+RPGP  NI  +  R+  +
Sbjct: 520  FQDLAKAKTNGIFQLESPGMKKVLLKVKPQNIEDISIVSALFRPGPQQNIKTFVERRFKR 579

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E+    +     +L+ T G+IIYQEQV+++ + ++ + ++ +D  RRA+ KK ++ + + 
Sbjct: 580  EEFSYWNEQTKKILEPTYGIIIYQEQVIELVKTIANFDIATSDNFRRAISKKDEKILMQL 639

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K+ FI+GA  N   + +   IFE +  FA YGFN SH+ AY+ ISY  A++K +YP+EFL
Sbjct: 640  KDDFINGALANNYKQPLVNQIFEYIFSFAHYGFNHSHSLAYSYISYWLAYLKHYYPLEFL 699

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKGVG 846
            +  ++    + EK+  +  +A+ FNI I  P +     DF + +++  I +    IKG G
Sbjct: 700  SVLLSHTSASKEKLLSYLDEAKDFNISIKGPDIQHFSNDFVIDNHKQIIRFGFKTIKGFG 759

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                + I  A  +        +   +    ++ + +E L+  GA D F  +R+ LL +L+
Sbjct: 760  DELLKKIKLALENAELSDYISYIDALKKGNISLKNIEILIRIGAFDSFEINRLFLLNNLE 819

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN-EQRVLGFYFSG 965
             I          +T  + + F          + L+  +  + + RF+  E + LG   S 
Sbjct: 820  EIF--------EKTGLNGHFFDLNL------VGLDYANDMSINERFQEDEIQYLGINLSS 865

Query: 966  HPLDVYKPILRKMGIK-GYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
                 Y   +    +K   E          + + A V++  Q KT+KG+
Sbjct: 866  LNYTNYTNEIDYSNLKYEIESFNEINTNYEVNIVAQVLNIVQSKTKKGN 914


>gi|209554072|ref|YP_002284852.1| DNA polymerase III DnaE [Ureaplasma urealyticum serovar 10 str. ATCC
            33699]
 gi|209541573|gb|ACI59802.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 10
            str. ATCC 33699]
          Length = 969

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 300/1009 (29%), Positives = 487/1009 (48%), Gaps = 102/1009 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F++L VHS YSLL  ALS+++++     + QP + +TD NN++  +EF  KA A  + PI
Sbjct: 2    FINLNVHSYYSLLNSALSIDDLIQHALDNNQPYVCLTDLNNMYGCIEFYDKAKAHNLIPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +                       ++V       GY +LI+  S +           
Sbjct: 62   IGLEF-----------------EYQNTTLVAYAKNYNGYLKLIKWSSWIMTNTTF----- 99

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
                 +QE   + +I+      G +                     +F +   Y      
Sbjct: 100  ----IIQEDFDDLIIV---CKKGGL---------------------VFENPNFY------ 125

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                + +               +A  +  +  E D      ++A+ +   +         
Sbjct: 126  ----QAQNQNASN--------AIALQSVFYAQENDKTVFLAMLAIKNDLKLDDFIDCHEF 173

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              +Y  N  E  S+FS         ++   +    LQV    LP  I     +       
Sbjct: 174  DKNYFLNDHEAQSLFS------TIALDNLNKVLNELQVEIHDLPINIPVYDKNNLTVSSE 227

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L+   ++GL+ RL       G   + Y +RL +EL+VI+  +F  YFLIV DFI +AK 
Sbjct: 228  ILKQLCISGLKQRLNAH---DGQVKKVYAKRLKYELDVISEKQFDDYFLIVYDFINYAKS 284

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I VGPGRGS AGS+ AY L ITDIDP++ +L+FERFLNP R SMPD D D   ++RD+
Sbjct: 285  NGIIVGPGRGSAAGSLVAYCLYITDIDPIKHNLIFERFLNPTRKSMPDIDTDIMDEKRDQ 344

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI Y+  KYG++ VA I+TF  L+AK ALRDVGR L +    +D++CK I  D    +  
Sbjct: 345  VIEYLFEKYGNDHVAYIVTFQRLKAKMALRDVGRILGIDLKVIDKICKNIKTDYDEDID- 403

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             AI   +  +E  +       L EIS+KL    R   THAAGI++ +  ++ ++P+    
Sbjct: 404  LAIKKSATLKEMYVL---HKELFEISKKLIHAPRQIGTHAAGIILSNSSITNIIPIQLG- 459

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHET 608
             +D P++Q++M+++E+ GLIK D LGLK LT++   L  + +    K+DL  I ++D   
Sbjct: 460  INDRPLSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKMIYKTQNKKIDLFNIDYNDKFV 519

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            +  L    T GIFQLES GM++ L  ++P  IEDI  + +L+RPGP  NI  +  R+  +
Sbjct: 520  FQDLAKAKTNGIFQLESPGMKKVLLKVKPQNIEDISIVSALFRPGPQQNIKTFVERRFKR 579

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E+    +     +L+ T G+IIYQEQV+++ + ++ + ++ +D  RRA+ KK ++ + + 
Sbjct: 580  EEFSYWNEQTKKILEPTYGIIIYQEQVIELVKTIANFDIATSDNFRRAISKKDEKILMQL 639

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K+ FI+GA  N   + +   IFE +  FA YGFN SH+ AY+ ISY  A++K +YP+EFL
Sbjct: 640  KDDFINGALANNYKQPLVNQIFEYIFSFAHYGFNHSHSLAYSYISYWLAYLKHYYPLEFL 699

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKGVG 846
            +  ++    + EK+  +  + + FNI I  P +     DF + +++  I +    IKG G
Sbjct: 700  SVLLSHTSASKEKLLSYLDETKDFNISIKGPDIQHFSNDFVIDNHKQIIRFGFKTIKGFG 759

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                + I  A  +        +   +    ++ + +E L+  GA D F  +R+ LL +L+
Sbjct: 760  DELLKKIKLALENAELSDYISYIDALKKGNISLKNIEILIRIGAFDSFEINRLFLLNNLE 819

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN-EQRVLGFYFSG 965
             I          +T  + + F          + L+  +  + + RF+  E + LG   S 
Sbjct: 820  EIF--------EKTGLNGHFFDLNL------VGLDYANDMSINERFQEDEIQYLGINLSS 865

Query: 966  HPLDVYKPILRKMGIK-GYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
                 Y   +    +K   E          + + A V++  Q KT+KG+
Sbjct: 866  LNYTNYTNEIDYSNLKYEIESFNEINTNYEVNIVAQVLNIVQSKTKKGN 914


>gi|188024087|ref|ZP_02996828.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 7
            str. ATCC 27819]
 gi|188019132|gb|EDU57172.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 7
            str. ATCC 27819]
          Length = 969

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 301/1009 (29%), Positives = 488/1009 (48%), Gaps = 102/1009 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F++L VHS YSLL  ALS+++++     + QP + +TD NN++  +EF  KA A  + PI
Sbjct: 2    FINLNVHSYYSLLNSALSIDDLIQHALDNNQPYVCLTDLNNMYGCIEFYDKAKAHNLIPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +                       ++V       GY +LI+  S +           
Sbjct: 62   IGLEF-----------------EYQNTTLVAYAKNYNGYLKLIKWSSWIMTNTTF----- 99

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
                 +QE   + +I+      G +                     +F +   Y      
Sbjct: 100  ----IIQEDFDDLIIV---CKKGGL---------------------VFENPNFY------ 125

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                + +               +A  +  +  E D      ++A+ +   +         
Sbjct: 126  ----QAQNQNASN--------AIALQSVFYAQENDKTVFLAMLAIKNDLKLDDFIDCHEF 173

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              +Y  N  E  S+FS         ++   +    LQV    LP  I     +       
Sbjct: 174  DKNYFLNDHEAQSLFS------TIALDNLNKVLNELQVEIHDLPINIPVYDKNNLTVSSE 227

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L+   ++GL+ RL       G   + Y QRL +EL+VI+  +F  YFLIV DFI +AK 
Sbjct: 228  ILKQLCISGLKQRLNAH---DGQVKKAYAQRLKYELDVISEKQFDDYFLIVYDFINYAKS 284

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I VGPGRGS AGS+ AY L ITDIDP++ +L+FERFLNP R SMPD D D   ++RD+
Sbjct: 285  NGIIVGPGRGSAAGSLVAYCLYITDIDPIKHNLIFERFLNPTRKSMPDIDTDIMDEKRDQ 344

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI Y+  KYG++ VA I+TF  L+AK ALRDVGR L +    +D++CK I  D    +  
Sbjct: 345  VIEYLFEKYGNDHVAYIVTFQRLKAKMALRDVGRILGIDLKVIDKICKNIKTDYDEDID- 403

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             AI   +  +E  +       L EIS+KL    R   THAAGI++ +  ++ ++P+    
Sbjct: 404  LAIKKSATLKEMYVL---HKELFEISKKLIHAPRQIGTHAAGIILSNSSITNIIPIQLG- 459

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHET 608
             +D P++Q++M+++E+ GLIK D LGLK LT++   L  + +    K+DL  I ++D   
Sbjct: 460  INDRPLSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKMIYKTQNKKIDLFNIDYNDKFV 519

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            +  L    T GIFQLES GM++ L  ++P  IEDI  + +L+RPGP  NI  +  R+  +
Sbjct: 520  FQDLAKAKTNGIFQLESPGMKKVLLKVKPQNIEDISIVSALFRPGPQQNIKTFVERRFKR 579

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E+    +     +L+ T G+IIYQEQV+++ + ++ + ++ +D  RRA+ K+ ++ + + 
Sbjct: 580  EEFSYWNEQTKKILEPTYGIIIYQEQVIELVKTIANFDIATSDNFRRAISKEDEKILMQL 639

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K+ FI+GA  N   + +   IFE +  FA YGFN SH+ AY+ ISY  A++K +YP+EFL
Sbjct: 640  KDDFINGALANNYKQPLVNQIFEYIFSFAHYGFNHSHSLAYSYISYWLAYLKHYYPLEFL 699

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKGVG 846
            +  ++    + EK+  +  +A+ FNI I  P +     DF + +++  I +    IKG G
Sbjct: 700  SVLLSHTSASKEKLLSYLDEAKDFNISIKGPDIQHFSNDFVIDNHKQIIRFGFKTIKGFG 759

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                + I  A  +        +   +    ++ + +E L+  GA D F  +R+ LL +L+
Sbjct: 760  DELLKKIKLALENAELSDYISYIDALKKGNISLKNIEILIRIGAFDSFEINRLFLLNNLE 819

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN-EQRVLGFYFSG 965
             I          +T  + + F          + L+  +  + + RF+  E + LG   S 
Sbjct: 820  EIF--------EKTGLNGHFFDLNL------VGLDYANDMSINERFQEDEIQYLGINLSS 865

Query: 966  HPLDVYKPILRKMGIK-GYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
                 Y   +    +K   E          + + A V++  Q KT+KG+
Sbjct: 866  LNYTNYTNEIDYSNLKYEIESFNEINTNYEVNIVAQVLNIVQSKTKKGN 914


>gi|171920935|ref|ZP_02932081.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 13
            str. ATCC 33698]
 gi|171903166|gb|EDT49455.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 13
            str. ATCC 33698]
          Length = 969

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 301/1009 (29%), Positives = 488/1009 (48%), Gaps = 102/1009 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F++L VHS YSLL  ALS+++++     + QP + +TD NN++  +EF  KA A  + PI
Sbjct: 2    FINLNVHSYYSLLNSALSIDDLIQHALDNNQPYVCLTDLNNMYGCIEFYDKAKAHNLIPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +                       ++V       GY +LI+  S +           
Sbjct: 62   IGLEF-----------------EYQNTTLVAYAKNYNGYLKLIKWSSWIMTNTTF----- 99

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
                 +QE   + +I+      G +                     +F +   Y      
Sbjct: 100  ----IIQEDFDDLIIV---CKKGGL---------------------VFENPNFY------ 125

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                + +               +A  +  +  E D      ++A+ +   +         
Sbjct: 126  ----QAQNQNASN--------AIALQSVFYAQENDKTVFLAMLAIKNDLKLDDFIDCHEF 173

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              +Y  N  E  S+FS         ++   +    LQV    LP  I     +       
Sbjct: 174  DKNYFLNDHEAQSLFS------TIALDNLNKVLNELQVEIHDLPINIPVYDKNNLTVSSE 227

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L+   ++GL+ RL       G   + Y +RL +EL+VI+  +F  YFLIV DFI +AK 
Sbjct: 228  ILKQLCISGLKQRLNAH---DGQVKKVYAKRLKYELDVISEKQFDDYFLIVYDFINYAKS 284

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I VGPGRGS AGS+ AY L ITDIDP++ +L+FERFLNP R SMPD D D   ++RD+
Sbjct: 285  NGIIVGPGRGSAAGSLVAYCLYITDIDPIKHNLIFERFLNPTRKSMPDIDTDIMDEKRDQ 344

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI Y+  KYG++ VA I+TF  L+AK ALRDVGR L +    +D++CK I  D    +  
Sbjct: 345  VIEYLFEKYGNDHVAYIVTFQRLKAKMALRDVGRILGIDLKVIDKICKNIKTDYDEDID- 403

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             AI   +  +E  +       L EIS+KL    R   THAAGI++ +  ++ ++P+    
Sbjct: 404  LAIKKSATLKEMYVL---HKELFEISKKLIHAPRQIGTHAAGIILSNSSITNIIPIQLG- 459

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHET 608
             +D P++Q++M+++E+ GLIK D LGLK LT++   L  + +    K+DL  I ++D   
Sbjct: 460  INDRPLSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKMIYKTQNKKIDLFNIDYNDKFV 519

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            +  L    T GIFQLES GM++ L  ++P  IEDI  + +L+RPGP  NI  +  R+  +
Sbjct: 520  FQDLAKAKTNGIFQLESPGMKKVLLKVKPQNIEDISIVSALFRPGPQQNIKTFVERRFKR 579

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E+    +     +L+ T G+IIYQEQV+++ + ++ + ++ +D  RRA+ KK ++ + + 
Sbjct: 580  EEFSYWNEQTKKILEPTYGIIIYQEQVIELVKTIANFDIATSDNFRRAISKKDEKILMQL 639

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K+ FI+GA  N   + +   IFE +  FA YGFN SH+ AY+ ISY  A++K +YP+EFL
Sbjct: 640  KDDFINGALANNYKQPLVNQIFEYIFSFAHYGFNHSHSLAYSYISYWLAYLKHYYPLEFL 699

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKGVG 846
            +  ++    + EK+  +  +A+ FNI I  P +     DF + +++  I +    IKG G
Sbjct: 700  SVLLSHTSASKEKLLSYLDEAKDFNISIKGPDIQHFSNDFVIDNHKQIIRFGFKTIKGFG 759

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                + I  A  +        +   +    ++ + +E L+  GA D F  +R+ LL +L+
Sbjct: 760  DELLKKIKLALENAELSDYISYIDALKKGNISLKNIEILIRIGAFDSFEINRLFLLNNLE 819

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN-EQRVLGFYFSG 965
             I          +T  + + F          + L+  +  + + RF+  E + LG   S 
Sbjct: 820  EIF--------EKTGLNGHFFDLNL------VGLDYANDMSINERFQEDEIQYLGINLSS 865

Query: 966  HPLDVYKPILRKMGIK-GYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
                 Y   +    +K   E          + + A V++  Q KT+KG+
Sbjct: 866  LNYTNYTNEIDYSNLKYEIESFNEINTNYEVNIVAQVLNIVQSKTKKGN 914


>gi|315111549|ref|YP_812810.2| DNA polymerase III, alpha subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 1164

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 281/992 (28%), Positives = 463/992 (46%), Gaps = 53/992 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           LQ  S+ ++L   +   +++         A+A+TD N  F   +F Q+A  AGI+P++G 
Sbjct: 6   LQTISANTILASPMKTADLVQGAKERGYSAVALTDINVTFGLADFYQEAVKAGIKPLLGL 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           Q             +G         +V L  + +GY+ L+ L S + +           L
Sbjct: 66  QGRF----------KGIELEEAEYDLVFLAQSQKGYKSLMRLSSFLNIASGDLAGPAPSL 115

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRA--FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
           + L E+ ++  +++  G +  + +      +  +  +K      K     LY+ +     
Sbjct: 116 ADLPEL-SDLTVIVPAGLTSELRQLNKLRNSGEEYVKKLQAFLPKGLP--LYLGVYPAES 172

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                ++ V +LA    LP+    +  +L   D     VL A+    V+ + +   +   
Sbjct: 173 A-AAYDAYVKKLAEISSLPITVVEDVRYLDPGDQFLCKVLQAIKERRVLDEHELTLMAEG 231

Query: 252 HYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                 R   V   +     LE  +  + + +   Q   P     +           +  
Sbjct: 232 QGSHWLRPAPVLEDACREMGLEEALANSGKIAASCQAKIPFEEPQLPVFPQATGLSSDQY 291

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           L   A AGLE    +  I        Y  RL  EL VI +M F+ YFLIV D + + ++ 
Sbjct: 292 LEKLAFAGLEKLGLRQGI--------YHARLQKELAVIQQMGFADYFLIVGDIVNYCRQK 343

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
              VGPGRGS AGS+ AYAL IT IDPL++ LLFERFLNP R  MPD D+DF    R   
Sbjct: 344 GALVGPGRGSAAGSLVAYALGITQIDPLKYDLLFERFLNPARADMPDIDLDFTTSGRKLA 403

Query: 431 IRYVQNKYG--------HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
             YVQ KYG         + VA+I+   +++AK+ L   G+   +    + RL +     
Sbjct: 404 FAYVQEKYGAKARFGEGSDLVARILALTTMKAKSVLERTGQVFGLTLPAIARLKQA---- 459

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +L      + F+    A P    L + + +LEGL     THA G+VI + PLS+ 
Sbjct: 460 MGAAKTLAEAGQQAEFKALVAASPLTRLLYQTAARLEGLPEDTGTHAPGLVISEEPLSRQ 519

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
           + +     + L   +   K++EK GL+K DFL L  L LL+  L  + +    +DL+ +P
Sbjct: 520 IGLMTGKEAPLWTVEQTKKYVEKYGLLKIDFLTLDNLELLEGVLAEIQKSSGPLDLTRLP 579

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            DD +T  L     T  IFQ  SSGM++ L  +QP   +D+   V+LYRPGPI +I +Y 
Sbjct: 580 LDDPDTLRLFARGETQQIFQFNSSGMQEVLRKIQPRTFDDLSVAVALYRPGPIASIPLYV 639

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            RKNG   +    P +  +L  T G+ +YQEQVMQ A++ +G+SL+EAD+ R A+ KK  
Sbjct: 640 ARKNGTSPVQYPDPSLKEVLGPTYGIFVYQEQVMQTARIFAGFSLAEADIFRNAISKKQA 699

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             + ++K++F++GA + G S+  A  ++ L+  FA+YGFN SHA AYA+++Y  A++  H
Sbjct: 700 GLLAEEKDKFVAGAVRKGHSRQAAEAVYALIEPFANYGFNHSHAVAYALLAYWQAFLSVH 759

Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
           +P EF    +       ++     + AR+  ++I+ P +N    + ++ + RIY  L  I
Sbjct: 760 FPREFYLEKL--RASRGKEKGAIIRQARKAGVEILGPDINLSRAEARLFEGRIYLGLKDI 817

Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            G+       ++     +P  S   F  ++D+K+L  + L  L+ AG  D    +R  LL
Sbjct: 818 MGITPAFLDQLLAL--KRPVTSFTAFLRQLDTKELKEKQLVPLIEAGLFDQVSPNRASLL 875

Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
            +  N+   A+  +K+     + + A E          E   +  ++ +   E+R +GF 
Sbjct: 876 VNCGNMLNTARLSQKSLVL-QDFLAAKE----------ENVPMPTAAEKVAMEERAMGFA 924

Query: 963 FSGHPLDVYKPIL-RKMGIKGYEESVATIRGN 993
            +  PL++    L ++ G K +        G 
Sbjct: 925 VTASPLEIAGKALAKRYGAKPFAGLALNETGQ 956


>gi|188524382|ref|ZP_03004409.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 12
            str. ATCC 33696]
 gi|195659745|gb|EDX53125.1| DNA polymerase III subunit alpha [Ureaplasma urealyticum serovar 12
            str. ATCC 33696]
          Length = 969

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 302/1009 (29%), Positives = 488/1009 (48%), Gaps = 102/1009 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F++L VHS YSLL  ALS+++++     + QP + +TD NN++  +EF  KA A  + PI
Sbjct: 2    FINLNVHSYYSLLNSALSIDDLIQHALDNNQPYVCLTDLNNMYGCIEFYDKAKAHNLIPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG +                       ++V       GY +LI+  S +           
Sbjct: 62   IGLEF-----------------EYQNTTLVAYAKNYNGYLKLIKWSSWIMTNTTF----- 99

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
                 +QE   + +I+      G +                     +F +   Y      
Sbjct: 100  ----IIQEDFDDLIIV---CKKGGL---------------------VFENPNFY------ 125

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                + +               +A  +  +  E D      ++A+ +   +         
Sbjct: 126  ----QAQNQNASN--------AIALQSVFYAQENDKTVFLAMLAIKNDLKLDDFIDCHEF 173

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              +Y  N  E  S+FS         ++   +    LQV    LP  I     +       
Sbjct: 174  DKNYFLNDHEAQSLFS------TIALDNLNKVLNELQVEIHDLPINIPVYDKNNLTVSSE 227

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L+   ++GL+ RL       G   + Y QRL +EL+VI+  +F  YFLIV DFI +AK 
Sbjct: 228  ILKQLCISGLKQRLNAH---DGQVKKAYAQRLKYELDVISEKQFDDYFLIVYDFINYAKS 284

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I VGPGRGS AGS+ AY L ITDIDP++ +L+FERFLNP R SMPD D D   ++RD+
Sbjct: 285  NGIIVGPGRGSAAGSLVAYCLYITDIDPIKHNLIFERFLNPTRKSMPDIDTDIMDEKRDQ 344

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI Y+  KYG++ VA I+TF  L+AK ALRDVGR L +    +D++CK I  D    +  
Sbjct: 345  VIEYLFEKYGNDHVAYIVTFQRLKAKMALRDVGRILGIDLKVIDKICKNIKTDYDEDID- 403

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             AI   +  +E  +       L EIS+KL    R   THAAGI++ +  ++ ++P+    
Sbjct: 404  LAIKKSATLKEMYVL---HKELFEISKKLIHAPRQIGTHAAGIILSNSSITNIIPIQLG- 459

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHET 608
             +D P++Q++M+++E+ GLIK D LGLK LT++   L  + +    K+DL  I ++D   
Sbjct: 460  INDRPLSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKMIYKTQNKKIDLFNIDYNDKFV 519

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            +  L    T GIFQLES GM++ L  ++P  IEDI  + +L+RPGP  NI  +  R+  +
Sbjct: 520  FQDLAKAKTNGIFQLESPGMKKVLLKVKPQNIEDISIVSALFRPGPQQNIKTFVERRFKR 579

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E+    +     +L+ T G+IIYQEQV+++ + ++ + ++ +D  RRA+ KK ++ + + 
Sbjct: 580  EEFSYWNEQTKKILEPTYGIIIYQEQVIELVKTIANFDIATSDNFRRAISKKDEKILMQL 639

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K+ FI+GA  N   + +   IFE +  FA YGFN SH+ AY+ ISY  A++K +YP+EFL
Sbjct: 640  KDDFINGALANNYKQPLVNQIFEYIFSFAHYGFNHSHSLAYSYISYWLAYLKHYYPLEFL 699

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKGVG 846
            +  ++    + EK+  +  +A+ FNI I  P +     DF + +++  I +    IKG G
Sbjct: 700  SVLLSHTSASKEKLLSYLDEAKDFNISIKGPDIQHFSNDFVIDNHKQIIRFGFKTIKGFG 759

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                + I  A  +        +   +    ++ + +E L+  GA D F  +R+ LL +L+
Sbjct: 760  DELLKKIKLALENAELSDYISYIDALKKGNISLKNIEILIRIGAFDSFEINRLFLLNNLE 819

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN-EQRVLGFYFSG 965
             I          +T  + + F          + L+  +  + + RF+  E + LG   S 
Sbjct: 820  EIF--------EKTGLNGHFFDLNL------VGLDYANDMSINERFQGDEIQYLGINLSS 865

Query: 966  HPLDVYKPILRKMGIK-GYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
                 Y   +    +K   E          + + A V++  Q KT+KG+
Sbjct: 866  LNYTNYTNEIDYSNLKYEIESFNEINTNYEVNIVAQVLNIVQSKTKKGN 914


>gi|300812161|ref|ZP_07092605.1| DNA polymerase III, alpha subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496846|gb|EFK31924.1| DNA polymerase III, alpha subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 1164

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 283/992 (28%), Positives = 460/992 (46%), Gaps = 53/992 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           LQ  S+ ++L   +   +++         A+A+TD N  F   +F Q+A  AGI+P++G 
Sbjct: 6   LQTISANTILASPMKTADLVQGAKERGYSAVALTDINVTFGLADFYQEAVKAGIKPLLGL 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           Q             +G         +V L  + +GYQ L+ L S + +           L
Sbjct: 66  QGRF----------KGVELEEAEYDLVFLAQSQKGYQSLMRLSSFLNIASGDLAGPAPSL 115

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRA--FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
           S L E+ ++  +++  G +  + +      +  +  +K      K     LY+ +     
Sbjct: 116 SDLPEL-SDLTVIVPAGLTSELRQLNKLRNSGEEYVKKLQAFLPKGLP--LYLGVYPAES 172

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                ++ V +LA    LP+    +  +L   D     VL A+    V+ + +   +   
Sbjct: 173 A-AAYDAYVKKLAEISALPITVVEDVRYLDPGDQFLCKVLQAIKERRVLDEHELTLMAEG 231

Query: 252 HYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                 R   V   +     LE  +  + + +       P     +           +  
Sbjct: 232 QGSHWLRPAPVLEDACREMGLEEALANSGKIAASCHAKIPFKEPQLPVFPQATGLSSDQY 291

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           L   A AGLE    +  I        Y  RL  EL VI +M F+ YFLIV D + + ++ 
Sbjct: 292 LEKLAFAGLEKLGLRQGI--------YHARLQKELAVIQQMGFADYFLIVGDIVNYCRQR 343

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
              VGPGRGS AGS+ AYAL IT IDPL++ LLFERFLNP R  MPD D+DF    R   
Sbjct: 344 GALVGPGRGSAAGSLVAYALGITQIDPLKYDLLFERFLNPARADMPDIDLDFTTSGRKLA 403

Query: 431 IRYVQNKYG--------HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
             YVQ KYG         + VA+I+   +++AK+ L   G+   +    + RL +     
Sbjct: 404 FAYVQEKYGAKARFGEGSDLVARILALTTMKAKSVLERTGQVFGLTLPAIARLKQA---- 459

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +L      + F+    A P    L + + +LEGL     THA G+VI + PLS+ 
Sbjct: 460 MGAAKTLAEAGQQTEFKALVAASPLTRLLYQTAARLEGLPEDTGTHAPGLVISEEPLSRQ 519

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
           + +     + L   +   K++EK GL+K DFL L  L LL+  L  + +    +DL+ +P
Sbjct: 520 IGLMTGKEAPLWTVEQTKKYVEKYGLLKIDFLTLDNLELLEGVLAEIQKSSGPLDLTRLP 579

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            DD +T  L     T  IFQ  SSGM++ L  +QP   +D+   V+LYRPGPI +I +Y 
Sbjct: 580 LDDPDTLRLFARGETQQIFQFNSSGMQEVLRKIQPRTFDDLSVAVALYRPGPIASIPLYV 639

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            RKNG   +    P +  +L  T G+ +YQEQVMQ A++ +G+SL+EADV R A+ KK  
Sbjct: 640 ARKNGTSPVQYPDPSLKEVLGPTYGIFVYQEQVMQTARIFAGFSLAEADVFRNAISKKQA 699

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             + ++K +F++GA + G S+  A  ++ L+  FA+YGFN SHA AYA+++Y  A++  H
Sbjct: 700 GLLAEEKGKFVAGAVRKGHSRQAAEAVYALIEPFANYGFNHSHAVAYALLAYWQAFLSVH 759

Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
           +P EF    +       ++     + AR+  ++I+ P +N    + ++ + RIY  L  I
Sbjct: 760 FPREFYLEKL--RASRGKEKGAIIRQARKAGVEILGPDINLSQAEARLFEGRIYLGLKDI 817

Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            G+       ++     +P  S   F  ++D+K+L  + L  L+ AG  D    +R  LL
Sbjct: 818 MGITPAFLDQLLAL--KRPVTSFPAFLRQLDTKELKEKQLVPLIEAGLFDQVSPNRASLL 875

Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
            +  N+   A+  +K+     + + A E          E   +   + +   E+R +GF 
Sbjct: 876 VNCGNMLNTARLSQKSLVL-QDFLAAKE----------ENVPMPTPAEKVAMEERAMGFA 924

Query: 963 FSGHPLDVYKPIL-RKMGIKGYEESVATIRGN 993
            +  PL++    L ++ G K +        G 
Sbjct: 925 VTASPLEIAGKALAKRYGAKPFAGLALNETGQ 956


>gi|47459322|ref|YP_016184.1| DNA polymerase III DnaE [Mycoplasma mobile 163K]
 gi|47458652|gb|AAT27973.1| DNA polymerase III alpha subunit [Mycoplasma mobile 163K]
          Length = 982

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 295/1036 (28%), Positives = 475/1036 (45%), Gaps = 124/1036 (11%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  +S YS+LE A+SL +++     +Q   +++TD N +F   EF +      I+PIIG 
Sbjct: 7    LHTNSEYSILESAISLEHLISYAKHNQLKYLSLTDHNTMFGVPEFYELCKKNSIKPIIGL 66

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             LD++                    +VL+    +GY  LI+L S+  L +          
Sbjct: 67   DLDVEN-----------------YRLVLIAKNYQGYLELIKLSSKKMLNENV-------- 101

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              L  I +  L ++   + G   +   F  S   +              Y+        D
Sbjct: 102  -ELNHIDSTNLFIIDHPTKGSFSK---FGQSIEIK------------NYYI-----NSLD 140

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
               ++             + T     L +ED E       +A++                
Sbjct: 141  PKHKNA------------IFTKEIRILEKEDNEILKTFNQIANNE--------------- 173

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
                 E      ++ E L   V                          D++ +    L+ 
Sbjct: 174  ---EEEFTLPEYEINEKLPQNVLNNIFYIIENSNVEFPKEYQNYLPQYDLKIDSSIVLKE 230

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
                    +     I K    Q+ ++R+++ELNVI  +KF+ YFLI+ D +++AK+N I 
Sbjct: 231  IVYKNFLEK-----IKKFEKYQNVKERINYELNVINSLKFADYFLIIYDIVKFAKENKIS 285

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            VGPGRGS AGS+ +Y L IT I+PL++ LLFERFLNP+R++MPD DIDF  DRRDE++ Y
Sbjct: 286  VGPGRGSAAGSIVSYLLNITSINPLKYDLLFERFLNPERITMPDIDIDFQDDRRDEIVEY 345

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            V  KYGH++VA I TF    AK ALRDVGR L      ++ + KL+  +           
Sbjct: 346  VTKKYGHQKVALITTFQRFGAKMALRDVGRNLNFTQVDMNNISKLVKLNQNLD----EAY 401

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
              ++F+   LA P  + L + ++K+E   R   THAAGI+I ++ L +++P+ +   S++
Sbjct: 402  RTTKFKAQMLASPKHELLYKNARKIENFPRQVGTHAAGIIISNKNLIEIIPIMQSSVSNI 461

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ----------KSLDFLAQRGVKVDLSLIPF 603
                ++M ++E   L+K D LGLK L+ ++          K     +      +      
Sbjct: 462  QTQ-YSMNYLENFSLLKIDLLGLKALSTIKLIEQKIREAYKIKYNFSNEDEYTEQLKKDL 520

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            D  + + LL+   T G+FQLES GM Q ++ ++     DI+ ++SLYRPGP+  I  Y +
Sbjct: 521  DPKKAFQLLSDGNTAGVFQLESPGMIQTIKKVKISKFSDIVDVISLYRPGPMQYIQEYID 580

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             KN   KI  +  L D ++ +T G+IIYQEQ+++I Q  +G S ++AD+LRRA+ KK  E
Sbjct: 581  NKNDASKIKHVEKLYDEIVSKTHGIIIYQEQILEIVQKYAGLSYAKADILRRAISKKNSE 640

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            E++K K+ FIS + ++G S+ +A  IF  +  FA YGFNKSHA +YA  ++  A +K ++
Sbjct: 641  EIEKFKDLFISSSIQHGQSEKVANEIFSKIENFAQYGFNKSHAVSYATTTFYFAQLKANF 700

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P+EF    ++   D++E I K+  +A+     +  P +N           +I+  L  IK
Sbjct: 701  PLEFYTVLISS-SDSLETINKYVIEAKNNLYTVESPDINVSDFKAFSDFEKIFLPLIMIK 759

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            G+G    + I++    +  + S     +R++   + + +LE L+ + AL  FG S   LL
Sbjct: 760  GLGKVAIQKILDERNQNGKYSSFFTLVARLNFVGITKGILEKLILSNALRNFG-SMQTLL 818

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK-----FSVENSSVRFENEQR 957
             +L     YA+ V          +F  E G       L K         + S   +NE  
Sbjct: 819  ANLTQAYAYAETV----------LFKDENGIEKINFGLSKEHTIVEDKRDLSFEAKNESE 868

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIG 1016
             LG  F+  P   Y+                 I      +A +V      +T+ K     
Sbjct: 869  YLGMVFNAFPTLKYETK---------NTLNNLILNIEYNVAIIVDKIFISRTKSKNKEYI 919

Query: 1017 WVTFSEPAKEYEANFF 1032
             + FS+  K  E   F
Sbjct: 920  KLIFSDRTKVVETAIF 935


>gi|325684283|gb|EGD26456.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 1164

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 282/992 (28%), Positives = 460/992 (46%), Gaps = 53/992 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           LQ  S+ ++L   +   +++         A+A+TD N  F   +F Q+A  AGI+P++G 
Sbjct: 6   LQTISANTILASPMKTADLVQGAKERGYSAVALTDINVTFGLADFYQEAVKAGIKPLLGL 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           Q             +G         +V L  + +GYQ L+ L S + +           L
Sbjct: 66  QGRF----------KGIELEEAEYDLVFLAQSQKGYQSLMRLSSFLNIASGDLAGPAPSL 115

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRA--FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
           + L E+ ++  +++  G +  + +      +  +  +K      K     LY+ +     
Sbjct: 116 ADLPEL-SDLTVIVPAGLTSELRQLNKLRNSGEEYVKKLQAFLPKGLP--LYLGVYPAES 172

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                ++ V +LA    LP+    +  +L   D     VL A+    V+ + +   +   
Sbjct: 173 A-AAYDAYVKKLAEISALPITVVEDVRYLDPGDQFLCKVLQAIKERRVLDEHELTLMAEG 231

Query: 252 HYLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                 R   V   +     LE  +  +   +       P     +           +  
Sbjct: 232 QGSHWLRPAPVLEDACREMGLEEALANSGEIAASCHAKIPFKEPQLPVFPQATGLSSDQY 291

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           L   A AGLE    +  I        Y  RL  EL VI +M F+ YFLIV D + + ++ 
Sbjct: 292 LEKLAFAGLEKLGLKQGI--------YHARLQKELAVIQQMGFADYFLIVGDIVNYCRQR 343

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
              VGPGRGS AGS+ AYAL IT IDPL++ LLFERFLNP R  MPD D+DF    R   
Sbjct: 344 GALVGPGRGSAAGSLVAYALGITQIDPLKYDLLFERFLNPARADMPDIDLDFTTSGRKLA 403

Query: 431 IRYVQNKYG--------HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
             YVQ KYG         + VA+I+   +++AK+ L   G+   +    + RL +     
Sbjct: 404 FAYVQEKYGAKARFGEGSDLVARILALTTMKAKSVLERTGQVFGLTLPAIARLKQA---- 459

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                +L      + F+    A P    L + + +LEGL     THA G+VI + PLS+ 
Sbjct: 460 MGAAKTLAEAGQQAEFKALVAASPLTRLLYQTAARLEGLPEDTGTHAPGLVISEEPLSRQ 519

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
           + +     + L   +   K++EK GL+K DFL L  L LL+  L  + +    +DL+ +P
Sbjct: 520 IGLMTGKEAPLWTVEQTKKYVEKYGLLKIDFLTLDNLELLEGVLAEIQKSSGPLDLTRLP 579

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            DD +T  L     T  IFQ  SSGM++ L  +QP   +D+   V+LYRPGPI +I +Y 
Sbjct: 580 LDDPDTLRLFARGETQQIFQFNSSGMQEVLRKIQPRTFDDLSVAVALYRPGPIASIPLYV 639

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            RKNG   +    P +  +L  T G+ +YQEQVMQ A++ +G+SL+EADV R A+ KK  
Sbjct: 640 ARKNGTSPVQYPDPSLKEVLGPTYGIFVYQEQVMQTARIFAGFSLAEADVFRNAISKKQA 699

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             + ++K +F++GA + G S+  A  ++ L+  FA+YGFN SHA AYA+++Y  A++  H
Sbjct: 700 GLLAEEKGKFVAGAVRKGHSRQAAEAVYALIEPFANYGFNHSHAVAYALLAYWQAFLSVH 759

Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
           +P EF    +       ++     + AR+  ++I+ P +N    + ++ + RIY  L  I
Sbjct: 760 FPREFYLEKL--RASRGKEKGAIIRQARKAGVEILGPEINLSQAEARLFEGRIYLGLKDI 817

Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            G+       ++     +P  S   F  ++D+K+L  + L  L+ AG  D    +R  LL
Sbjct: 818 MGITPAFLDQLLAL--KRPVTSFPAFLRQLDTKELKEKQLVPLIEAGLFDQVSPNRASLL 875

Query: 903 QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
            +  N+   A+  +K+     + + A E          E   +  ++ +   E+R +GF 
Sbjct: 876 VNCGNMLNTARLSQKSLVL-QDFLAAKE----------ENVPMPTAAEKVAMEERAMGFA 924

Query: 963 FSGHPLDVYKPIL-RKMGIKGYEESVATIRGN 993
            +  PL++    L ++ G K +        G 
Sbjct: 925 VTASPLEIAGKALAKRYGAKPFAGLALNETGQ 956


>gi|104773898|ref|YP_618878.1| DNA polymerase III, alpha subunit (DnaE) [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103422979|emb|CAI97659.1| DNA polymerase III, alpha subunit (DnaE) [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
          Length = 1159

 Score =  398 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 278/988 (28%), Positives = 461/988 (46%), Gaps = 53/988 (5%)

Query: 18  SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDI 77
           S+ ++L   +   +++         A+A+TD N  F   +F Q+A  AGI+P++G Q   
Sbjct: 5   SANTILASPMKTADLVQGAKERGYSAVALTDINVTFGLADFYQEAVKAGIKPLLGLQGRF 64

Query: 78  DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
                     +G         +V L  + +GY+ L+ L S + +           L+ L 
Sbjct: 65  ----------KGIELEEAEYDLVFLAQSQKGYKSLMRLSSFLNIASGDLAGPAPSLADLP 114

Query: 138 EIGTEGLIMLTGGSSGPIDRA--FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY 195
           E+ ++  +++  G +  + +      +  +  +K      K     LY+ +         
Sbjct: 115 EL-SDLTVIVPAGLTSELRQLNKLRNSGEEYVKKLQAFLPKGLP--LYLGVYPAESA-AA 170

Query: 196 RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
            ++ V +LA    LP+    +  +L   D     VL A+    V+ + +   +       
Sbjct: 171 YDAYVKKLAEISALPITVVEDVRYLDPGDQFLCKVLQAIKERRVLDEHELTLMAQGQGSH 230

Query: 256 N-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
             R   V   +     LE  +  + + +   Q   P     +           +  L   
Sbjct: 231 WLRPAPVLEDACREMGLEEALANSGKIAASCQAKIPFKEPQLPVFPQATGLSSDQYLEKL 290

Query: 315 AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
           A AG+E    +  I        Y  RL  EL VI +M F+ YFLIV D + + ++    V
Sbjct: 291 AFAGMEKLGLRQGI--------YHARLQKELAVIQQMGFADYFLIVGDIVNYCRQKGALV 342

Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
           GPGRGS AGS+ AYAL IT IDPL++ LLFERFLNP R  MPD D+DF    R     YV
Sbjct: 343 GPGRGSAAGSLVAYALGITQIDPLKYDLLFERFLNPARADMPDIDLDFTTSGRKLAFAYV 402

Query: 435 QNKYG--------HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           Q KYG         + VA+I+   +++AK+ L   G+   +    + RL +         
Sbjct: 403 QEKYGVKARFGEGSDLVARILALTTMKAKSVLERTGQVFGLTLPAIARLKQA----MGAA 458

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L      + F+    A P    L + + +LEGL     THA G+VI + PLS+ + + 
Sbjct: 459 KTLAEAGQQAEFKALVAASPLTRLLYQTAARLEGLPEDTGTHAPGLVISEEPLSRQIGLM 518

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
               + L   +   K++EK GL+K DFL L  L LL+  L  + +    +DL+ +P DD 
Sbjct: 519 TGKEAPLWTVEQTKKYVEKYGLLKIDFLTLDNLELLEGVLAEIQKSSGPLDLTRLPLDDP 578

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
           +T  L     T  IFQ  SSGM++ L  +QP   +D+   V+LYRPGPI +I +Y  RKN
Sbjct: 579 DTLRLFARGETQQIFQFNSSGMQEVLRKIQPRTFDDLSVAVALYRPGPIASIPLYVARKN 638

Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
           G   +    P +  +L  T G+ +YQEQVMQ A++ +G+SL+EAD+ R A+ KK    + 
Sbjct: 639 GTSPVQYPDPSLKEVLGPTYGIFVYQEQVMQTARIFAGFSLAEADIFRNAISKKQAGLLA 698

Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
           ++K++F++GA + G S+  A  ++ L+  FA+YGFN SHA AYA+++Y  A++  H+P E
Sbjct: 699 EEKDKFVAGAVRKGHSRQAAEAVYALIEPFANYGFNHSHAVAYALLAYWQAFLSVHFPRE 758

Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
           F    +       ++     + AR+  ++I+ P +N    + ++ + RIY  L  I G+ 
Sbjct: 759 FYLEKL--RASRGKEKGAIIRQARKAGVEILGPDINLSRAEARLFEGRIYLGLKDIMGIT 816

Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 ++     +P  S   F  ++D+K+L  + L  L+ AG  D    +R  LL +  
Sbjct: 817 PAFLDQLLAL--KRPVTSFTAFLRQLDTKELKEKQLVPLIEAGLFDQVSPNRASLLVNCG 874

Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
           N+   A+  +K+     + + A E          E   +  ++ +   E+R +GF  +  
Sbjct: 875 NMLNTARLSQKSLVL-QDFLAAKE----------ENVPMPTAAEKVAMEERAMGFAVTAS 923

Query: 967 PLDVYKPIL-RKMGIKGYEESVATIRGN 993
           PL++    L ++ G K +        G 
Sbjct: 924 PLEIAGKALAKRYGAKPFAGLALNETGQ 951


>gi|237732881|ref|ZP_04563362.1| DNA polymerase III subunit alpha [Mollicutes bacterium D7]
 gi|229384034|gb|EEO34125.1| DNA polymerase III subunit alpha [Coprobacillus sp. D7]
          Length = 1034

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 259/921 (28%), Positives = 455/921 (49%), Gaps = 63/921 (6%)

Query: 166  VAEKRLLTFKKLFG-DRLYVNLQRHRGYDRYRE---SQVVQLAYTHELPLVATNNSLFLS 221
             A+K L  +  +FG + + + +  H           + +    +      VATN+  +L+
Sbjct: 12   DADKLLDEYTNIFGKNNVIIEISLHGIQSEKDFINSNWLQSKIFNEGYMYVATNDIYYLN 71

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            +E      + +++  +     +    V  +     ++E            +    +    
Sbjct: 72   KEHALHRSIGLSMNPNPDGIDEYSNYVDYNSEFYFKTEKEMEKVFSAYLHKYPDLLTNSE 131

Query: 282  SFILQVHAPILPRFIEKECD-DIQKEEENELRNKAVAGLEVRLAQG-AIAKGYHAQDYRQ 339
              + Q +A +       E         E  L      G + +     AI   +  +DY++
Sbjct: 132  KIVKQCNAQVPIERALPEFPLPNGFSSEQYLYKLVWEGFKEKFPNESAIDNRFTLEDYKE 191

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP-------------------------- 373
            RL+ E + I +M F  YFLIV DFI W+K   +                           
Sbjct: 192  RLEHEFDTIVKMGFVDYFLIVQDFINWSKDIEVYKHPEVYFPHIELSKVSKMCIEKNFEI 251

Query: 374  -VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
             VGPGRGS AGS+ AY L IT++DP+++ LLFERFLNP+R+SMPD DIDF    R++V+ 
Sbjct: 252  KVGPGRGSAAGSLLAYCLKITNLDPMKYDLLFERFLNPERVSMPDVDIDFSNRDREKVVE 311

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP--------- 483
            YVQNKYG+  VAQI+TF  L+ K+ ++ V ++  +PYS+ D + K+IP            
Sbjct: 312  YVQNKYGYSHVAQIVTFQKLKLKSIIKKVAKSYGIPYSKTDEMTKMIPGKICVSTEKEDG 371

Query: 484  ------AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                    P  L  I +   F      D  +  + ++ + LEGL      HAAG++IG +
Sbjct: 372  TIEIVEKEPELLCEIENIDYFSNLINKDDDIKLVFKMGKVLEGLTSTTGKHAAGVIIGRQ 431

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596
            PL   +P+       + VTQF  K  E  GL+K DFLGL+TL ++Q++ + + +   ++ 
Sbjct: 432  PLQSYLPLM--EVDGVLVTQFEKKASESIGLLKMDFLGLQTLDIIQETEELVKENYNQII 489

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             ++ I  +D +T+ +     T  +FQ E +GM+  L+ M P  +E + A  +LYRPGP+D
Sbjct: 490  HINDISIEDEKTFEIFQKGNTGRVFQFEGAGMKNLLKQMHPTSLEHLNAACALYRPGPMD 549

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             I  Y   +    KI   H L   + +ET G+++YQEQ+MQ+ Q ++G+SL EAD+LRR 
Sbjct: 550  YIPNYIEGRKFPNKIDYPHELFKEVAEETFGILVYQEQIMQLVQKMAGFSLGEADILRRG 609

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            + KK K+ +DK +++F+ G  K  +++  +  I++ +  FA+YGFNKSH+ AY+ +SYQT
Sbjct: 610  ISKKEKDYLDKARKQFVDGCKKINVAEETSSKIYDTIELFAEYGFNKSHSCAYSYVSYQT 669

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-- 834
             W+K H+P  F+AA++T+   N +K+     + ++  I+++PP +N     F + +    
Sbjct: 670  GWLKAHFPEAFMAANLTVAAQNKDKVAAILSECKKMQIEVLPPDINKSEDKFTLENKNGK 729

Query: 835  --IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              I +   AI+ VG   A+        K   S ++F + ++  +L +  L  ++ +GA D
Sbjct: 730  MCIRFGFNAIQDVGEQFAKQ-CSRKNKKSLTSFQEFLNELNISQLRKDTLTFMINSGAFD 788

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
             +G +R+ L + L+N+ +Y +  ++     ++ + +     + D                
Sbjct: 789  NYG-TRLALNKELENLLEYEKAKKRINLVGYKFVLSLPTNNYFDGYEYP------LDKLV 841

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             NE+  + F  SGH LD Y+ + ++       +   +   + + +  ++ + +Q  T+KG
Sbjct: 842  SNEKEAIHFSLSGHILDGYRNLYQEKTAIADIKIDQSYYDSYVSVLGIIKNIKQITTKKG 901

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
            S++ +++  +   E E   FP
Sbjct: 902  SQMAFLSLEDETGELEGVIFP 922


>gi|116093219|gb|ABJ58372.1| DNA polymerase III catalytic subunit, DnaE type [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 1159

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 279/988 (28%), Positives = 461/988 (46%), Gaps = 53/988 (5%)

Query: 18  SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDI 77
           S+ ++L   +   +++         A+A+TD N  F   +F Q+A  AGI+P++G Q   
Sbjct: 5   SANTILASPMKTADLVQGAKERGYSAVALTDINVTFGLADFYQEAVKAGIKPLLGLQGRF 64

Query: 78  DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
                     +G         +V L  + +GY+ L+ L S + +           L+ L 
Sbjct: 65  ----------KGIELEEAEYDLVFLAQSQKGYKSLMRLSSFLNIASGDLAGPAPSLADLP 114

Query: 138 EIGTEGLIMLTGGSSGPIDRA--FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY 195
           E+ ++  +++  G +  + +      +  +  +K      K     LY+ +         
Sbjct: 115 EL-SDLTVIVPAGLTSELRQLNKLRNSGEEYVKKLQAFLPKGLP--LYLGVYPAESA-AA 170

Query: 196 RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
            ++ V +LA    LP+    +  +L   D     VL A+    V+ + +   +       
Sbjct: 171 YDAYVKKLAEISSLPITVVEDVRYLDPGDQFLCKVLQAIKERRVLDEHELTLMAEGQGSH 230

Query: 256 N-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
             R   V   +     LE  +  + + +   Q   P     +           +  L   
Sbjct: 231 WLRPAPVLEDACREMGLEEALANSGKIAASCQAKIPFEEPQLPVFPQATGLSSDQYLEKL 290

Query: 315 AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
           A AGLE    +  I        Y  RL  EL VI +M F+ YFLIV D + + ++    V
Sbjct: 291 AFAGLEKLGLRQGI--------YHARLQKELAVIQQMGFADYFLIVGDIVNYCRQKGALV 342

Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
           GPGRGS AGS+ AYAL IT IDPL++ LLFERFLNP R  MPD D+DF    R     YV
Sbjct: 343 GPGRGSAAGSLVAYALGITQIDPLKYDLLFERFLNPARADMPDIDLDFTTSGRKLAFAYV 402

Query: 435 QNKYG--------HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           Q KYG         + VA+I+   +++AK+ L   G+   +    + RL +         
Sbjct: 403 QEKYGAKARFGEGSDLVARILALTTMKAKSVLERTGQVFGLTLPAIARLKQA----MGAA 458

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L      + F+    A P    L + + +LEGL     THA G+VI + PLS+ + + 
Sbjct: 459 KTLAEAGQQAEFKALVAASPLTRLLYQTAARLEGLPEDTGTHAPGLVISEEPLSRQIGLM 518

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
               + L   +   K++EK GL+K DFL L  L LL+  L  + +    +DL+ +P DD 
Sbjct: 519 TGKEAPLWTVEQTKKYVEKYGLLKIDFLTLDNLELLEGVLAEIQKSSGPLDLTRLPLDDP 578

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
           +T  L     T  IFQ  SSGM++ L  +QP   +D+   V+LYRPGPI +I +Y  RKN
Sbjct: 579 DTLRLFARGETQQIFQFNSSGMQEVLRKIQPRTFDDLSVAVALYRPGPIASIPLYVARKN 638

Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
           G   +    P +  +L  T G+ +YQEQVMQ A++ +G+SL+EAD+ R A+ KK    + 
Sbjct: 639 GTSPVQYPDPSLKEVLGPTYGIFVYQEQVMQTARIFAGFSLAEADIFRNAISKKQAGLLA 698

Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
           ++K++F++GA + G S+  A  ++ L+  FA+YGFN SHA AYA+++Y  A++  H+P E
Sbjct: 699 EEKDKFVAGAVRKGHSRQAAEAVYALIEPFANYGFNHSHAVAYALLAYWQAFLSVHFPRE 758

Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
           F    +       ++     + AR+  ++I+ P +N    + ++ + RIY  L  I G+ 
Sbjct: 759 FYLEKL--RASRGKEKGAIIRQARKAGVEILGPDINLSRAEARLFEGRIYLGLKDIMGIT 816

Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 ++     +P  S   F  ++D+K+L  + L  L+ AG  D    +R  LL +  
Sbjct: 817 PAFLDQLLAL--KRPVTSFTAFLRQLDTKELKEKQLVPLIEAGLFDQVSPNRASLLVNCG 874

Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
           N+   A+  +K+     + + A E          E   +  ++ +   E+R +GF  +  
Sbjct: 875 NMLNTARLSQKSLVL-QDFLAAKE----------ENVPMPTAAEKVAMEERAMGFAVTAS 923

Query: 967 PLDVYKPIL-RKMGIKGYEESVATIRGN 993
           PL++    L ++ G K +        G 
Sbjct: 924 PLEIAGKALAKRYGAKPFAGLALNETGQ 951


>gi|218674999|ref|ZP_03524668.1| DNA polymerase III protein, alpha subunit [Rhizobium etli GR56]
          Length = 821

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 192/744 (25%), Positives = 337/744 (45%), Gaps = 44/744 (5%)

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            + +  L +     +  R  +G        Q   + +  EL +I  MK++ YFL V   ++
Sbjct: 2    DAQQSLEHYVRECIPNRYPEGL------PQKVLRTVRHELALIKEMKYAPYFLTVFSIVK 55

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
            +A+   I    GRGS A S   Y L IT IDP    LLFERF++ +R   PD D+DF  +
Sbjct: 56   FARSQGIL-CQGRGSAANSAICYILGITSIDPDTNDLLFERFVSRERDEPPDIDVDFEHE 114

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            RR++VI+++   YG ++ A   T    +AK A+RDVG+AL +P   +  L   + +    
Sbjct: 115  RREQVIQWIYKTYGKDKAALCSTVTRYRAKGAIRDVGKALGLPEDVIKALSSGMWSW--- 171

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              S +    + R      +D  +   L+++++L G  RH   H  G V+    L  LVP+
Sbjct: 172  --SEELPDRNIRELNLNPSDRRLALALKLARQLMGAPRHLGQHPGGFVLTHDRLDDLVPI 229

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFD 604
                  D  + +++   +E    +K D L L  LT + K+ D + +      DL+ IP +
Sbjct: 230  EPATMKDRQIIEWDKDDVEALKFMKVDVLALGMLTCMNKAFDLIREHKDDELDLATIPQE 289

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-- 662
            D  TY ++    TLG FQ+ES      L  ++P+   D++  V++ RPGPI   +V+   
Sbjct: 290  DAATYAMIRKADTLGTFQIESRAQMSMLPRLKPETFYDLVMQVAIVRPGPIQGNMVHPYL 349

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R+ GKEK     P ++ +L  T GV ++QE  M++A + +G++  EAD LR++M     
Sbjct: 350  RRREGKEKPEYPTPELEAVLGRTLGVPLFQESAMKVAMVCAGFTGGEADQLRKSMATFKF 409

Query: 723  EE-MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
               + + K++ +SG  KNG S   A   F  L  F  YGF +SHAA++A+I+Y + ++K 
Sbjct: 410  TGGVSRFKDKLVSGMIKNGYSPEFAEKTFGQLEGFGSYGFPESHAASFALIAYASNYVKC 469

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD------NRI 835
            H+P  F AA +  +        +   DA+   +++ P  +N    D  +        + +
Sbjct: 470  HFPDVFCAALLNSQPMGFYAPAQIVGDAKNHGVEVRPVCINKSRWDCTLERIGTGDRHAV 529

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCF 894
               +  ++G+    A  I+ A  ++ F+S++D   R     +    L+ L  A A     
Sbjct: 530  RLGMRMVRGLAVADAARIVAARMNREFESVDDVWRR---SNVPTEALDQLAEADAFLPSL 586

Query: 895  GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV-----ENSS 949
               R   + ++  ++                +FA      +  I  ++            
Sbjct: 587  KLQRRDAIWAIKALRDE-----------PLPLFAAAAEREAKVIPEQQEPQVRLRRMTEG 635

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
                 +   +G     HP+   +  L+K  I    E++    G  +  A +V+ +Q   +
Sbjct: 636  HNVVQDYSHVGLTLRDHPITFLRQDLQKRNIVTCSEAMNARDGRWLMAAGLVLVRQMPGS 695

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
             KG  + ++T  +         +P
Sbjct: 696  AKG--VMFITIEDETGPANIVIWP 717


>gi|313123522|ref|YP_004033781.1| DNA polymerase iii, alpha subunit (dnae) [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312280085|gb|ADQ60804.1| DNA polymerase III, alpha subunit (DnaE) [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 1159

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 280/988 (28%), Positives = 460/988 (46%), Gaps = 53/988 (5%)

Query: 18  SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDI 77
           S+ ++L   +   +++         A+A+TD N  F   +F Q+A  AGI+P++G Q   
Sbjct: 5   SANTILASPMKTADLVQGAKERGYSAVALTDINVTFGLADFYQEAVKAGIKPLLGLQGRF 64

Query: 78  DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
                     +G         +V L  + +GYQ L+ L S + +           L+ L 
Sbjct: 65  ----------KGIELEEAEYDLVFLAQSQKGYQSLMRLSSFLNIASGDLAGPAPSLADLP 114

Query: 138 EIGTEGLIMLTGGSSGPIDRA--FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY 195
           E+ ++  +++  G +  + +      +  +  +K      K     LY+ +         
Sbjct: 115 EL-SDLTVIVPAGLTSELRQLNKLRNSGEEYVKKLQAFLPKGLP--LYLGVYPAESA-AA 170

Query: 196 RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
            ++ V +LA    LP+    +  +L   D     VL A+    V+ + +   +       
Sbjct: 171 YDAYVKKLAEISALPITVVEDVRYLDPGDQFLCKVLQAIKERRVLDEHELTLMAEGQGSH 230

Query: 256 N-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
             R   V   +     LE  +  + + +       P     +           +  L   
Sbjct: 231 WLRPAPVLEDACREMGLEEALANSGKIAASCHAKIPFKEPQLPVFPQATGLSSDQYLEKL 290

Query: 315 AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
           A AGLE    +  I        Y  RL  EL VI +M F+ YFLIV D + + ++    V
Sbjct: 291 AFAGLEKLGLRQGI--------YHARLQKELAVIQQMGFADYFLIVGDIVNYCRQRGALV 342

Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
           GPGRGS AGS+ AYAL IT IDPL++ LLFERFLNP R  MPD D+DF    R     YV
Sbjct: 343 GPGRGSAAGSLVAYALGITQIDPLKYDLLFERFLNPARADMPDIDLDFTTSGRKLAFAYV 402

Query: 435 QNKYG--------HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           Q KYG         + VA+I+   +++AK+ L   G+   +    + RL +         
Sbjct: 403 QEKYGAKARFGEGSDLVARILALTTMKAKSVLERTGQVFGLTLPAIARLKQA----MGAA 458

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +L      + F+    A P    L + + +LEGL     THA G+VI + PLS+ + + 
Sbjct: 459 KTLAEAGQQAEFKALVAASPLTRLLYQTAARLEGLPEDTGTHAPGLVISEEPLSRQIGLM 518

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
               + L   +   K++EK GL+K DFL L  L LL+  L  + +    +DL+ +P DD 
Sbjct: 519 TGKEAPLWTVEQTKKYVEKYGLLKIDFLTLDNLELLEGVLAEIQKSSGPLDLTRLPLDDP 578

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
           +T  L     T  IFQ  SSGM++ L  +QP   +D+   V+LYRPGPI +I +Y  RKN
Sbjct: 579 DTLRLFARGETQQIFQFNSSGMQEVLRKIQPRTFDDLSVAVALYRPGPIASIPLYVARKN 638

Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
           G   +    P +  +L  T G+++YQEQVMQ A++ +G+SL+EADV R A+ KK    + 
Sbjct: 639 GTSPVQYPDPSLKEVLGPTYGILVYQEQVMQTARIFAGFSLAEADVFRNAISKKQAGLLA 698

Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
           ++K +F++GA + G S+  A  ++ L+  FA+YGFN SHA AYA+++Y  A++  H+P E
Sbjct: 699 EEKGKFVAGAVRKGHSRQAAEAVYALIEPFANYGFNHSHAVAYALLAYWQAFLSVHFPRE 758

Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
           F    +       ++     + AR+  ++I+ P +N    + ++ + RIY  L  I G+ 
Sbjct: 759 FYLEKL--RASRGKEKGAIIRQARKAGVEILGPDINLSQAEARLFEGRIYLGLKDIMGIT 816

Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 ++     +P  S   F  ++D+K+L  + L  L+ AG  D    +R  LL +  
Sbjct: 817 PAFLDQLLAL--KRPVTSFPAFLRQLDTKELKEKQLVPLIEAGLFDQVSPNRASLLVNCG 874

Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
           N+   A+  +K+     + + A E          E   +  ++ +   E+R +GF  +  
Sbjct: 875 NMLNTARLSQKSLVL-QDFLAAKE----------ENVPMPTAAEKVAMEERAMGFAVTAS 923

Query: 967 PLDVYKPIL-RKMGIKGYEESVATIRGN 993
           PL++    L ++ G K +        G 
Sbjct: 924 PLEIAGKALAKRYGAKPFAGLALNETGQ 951


>gi|297520197|ref|ZP_06938583.1| DNA polymerase III subunit alpha [Escherichia coli OP50]
          Length = 490

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 203/507 (40%), Positives = 294/507 (57%), Gaps = 23/507 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + + P FVHL+VHS  S+++G      ++ K AA   PA+AITD  NL   ++F      
Sbjct: 1   MSE-PRFVHLRVHSDCSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGI+PI+G   ++          Q       +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60  AGIKPIVGADFNV----------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
           G     I   WL E+  EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++
Sbjct: 110 GAAGPIIDRDWLIEL-NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFL 168

Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            L R    D        V+LA    LP+VATN+  F+   D++AH++ +A+     +   
Sbjct: 169 ELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDP 228

Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            RPR  +P  Y+++  EM  +F+D+PEAL NTVEIA+RC+  +++       +   +   
Sbjct: 229 KRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303 IQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M F GYFLI
Sbjct: 284 GDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLI 343

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           V +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD
Sbjct: 344 VMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFD 403

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           +DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLI
Sbjct: 404 VDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLI 463

Query: 480 PNDPAHPVSLQAIADDSRFREARLADP 506
           P DP   +  +A   + +  E   AD 
Sbjct: 464 PPDPGMTL-AKAFEAEPQLPEIYEADE 489


>gi|329115409|ref|ZP_08244163.1| Error-prone DNA polymerase 2 [Acetobacter pomorum DM001]
 gi|326695388|gb|EGE47075.1| Error-prone DNA polymerase 2 [Acetobacter pomorum DM001]
          Length = 765

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 200/706 (28%), Positives = 334/706 (47%), Gaps = 36/706 (5%)

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
             F+L +I RM+++ YFL V   + +A+  +I    GRGS A S   Y L IT IDP R S
Sbjct: 9    QFKLGLIGRMEYAPYFLTVNSIVCYARSQDIL-CQGRGSAANSAVCYVLGITAIDPARNS 67

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            LLFERF++ +R   PD D+DF   RR++VI++V   YG +R A        +AK ALRDV
Sbjct: 68   LLFERFVSEERGEPPDIDVDFEHARREQVIQWVYEHYGRDRAALTAVVIRYRAKGALRDV 127

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
            G+ + +P   +  L   I       +   A+ D        L+D  V   L++ + L G+
Sbjct: 128  GKVMGLPEDLIRTLSGQIHGW-GRKLDDDALHDS----GIDLSDRRVRLTLDLVRCLIGV 182

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             RH S H  G V+    L +LVP+         + +++   I+    +K D L L  LT 
Sbjct: 183  PRHLSQHPGGFVLTHDRLDELVPIEPASMEARQIIEWDKDDIDVLKFMKVDILALGMLTC 242

Query: 582  LQKSLDFLAQRGVKVD-LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            ++  LD LA+   +   L  IP +D  TY ++    T+G+FQ+ES      L  ++P   
Sbjct: 243  MKTGLDLLAEHKDQHFTLQSIPAEDPRTYAMIRKADTIGVFQIESRAQMSMLPRLKPRVF 302

Query: 641  EDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
             D++  V++ RPGPI   +V+    R+ G E+     P ++ +L +T G+ ++QEQ MQ+
Sbjct: 303  YDLVIEVAIVRPGPIQGDMVHPYLRRREGLEREDYPTPELEAVLSKTLGIPLFQEQAMQV 362

Query: 699  AQLLSGYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            A + +G++ +EAD LRRAM        + + ++R I G   NG  +  A  I++ L  F 
Sbjct: 363  AMICAGFTAAEADQLRRAMATFKNTGTVSQFQKRLIEGMRANGYPEEFAERIYQQLEGFG 422

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             YGF +SHAA++A+++Y ++WMK  +P  FLA+ +  +        +  +DAR+  ++I 
Sbjct: 423  SYGFPESHAASFAILAYSSSWMKCTHPDVFLASLLNSQPMGFYAPAQLVRDAREHGVEIW 482

Query: 818  PPSVNTPCVDFKVGDN-------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
            P  VN    D  +           +   ++ +KG+    A  I+ A + +PF S++D   
Sbjct: 483  PVCVNASRWDSTLEGPERPDGMFAVRLGMSLVKGLANDDAARIVAARSSRPFTSVDDLWR 542

Query: 871  RVDSKKLNRRVLESLVFAGALD-CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            R   K      L  L  A A     G +R + L ++  ++                +FA 
Sbjct: 543  RAGVKA---AALTHLAEADAFRPSLGLARREALWAIKALRDE-----------PLPLFAA 588

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
             + T   +                 +   LG     HPL   +  LR   I    +++  
Sbjct: 589  AEVTREAEEPDVLLQPMRDGAEVVRDYNRLGLTLRDHPLTFLREDLRAQDIVTCRDALNA 648

Query: 990  IRGNN--IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              G    + +A +V+ +Q+  + +G  + ++T  +         +P
Sbjct: 649  KDGKRLTVAVAGLVLVRQRPGSAEG--VVFMTLEDETANMNVIIWP 692


>gi|229105233|ref|ZP_04235882.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-28]
 gi|228678159|gb|EEL32387.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-28]
          Length = 562

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 212/584 (36%), Positives = 329/584 (56%), Gaps = 32/584 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHLQ  + +SLL+ A  ++ ++ +       ++AITD N ++  + F +     GIQP+
Sbjct: 3   FVHLQCQTVFSLLKSACKIDELVVRAKELGFSSLAITDENVMYGVIPFYKACKKHGIQPV 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG    I  ++                 +VLL     GYQ L+++ S +    +      
Sbjct: 63  IGLTASIFSEEE-----------ERSYPLVLLAENEIGYQNLLKISSSIMTKSKEG---- 107

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I   WL     +GLI ++ G  G I++    ++   AE+   T++ +FG   Y++LQ H 
Sbjct: 108 IPKKWLAHY-AKGLIAISPGKDGEIEQLLLEDNESQAEEVARTYQNMFG-HFYMSLQHHA 165

Query: 191 GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
             D      ++ +      +P+VATN+  ++++ D   H+ L++V   T ++  DRPR  
Sbjct: 166 IQDELLLQEKLPEFISRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLK 225

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
           T  +YLK+  EM ++FS   EA+ NTV+IA RC   +  H   LP+F         +  +
Sbjct: 226 TDQYYLKSSDEMEALFSHTEEAIYNTVKIAERCKVEIPFHVNQLPKFPVP----SNETND 281

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             LR     GL           G   + + +RL+ ELNVI+ M FS YFLIV DF+++A 
Sbjct: 282 IYLRRVCEEGLHK-------RYGTPKEVHIKRLNHELNVISSMGFSDYFLIVWDFMKYAH 334

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
           +N+I  GPGRGS AGS+ +Y L ITDIDP+ + LLFERFLNP+R+++PD DIDF   RRD
Sbjct: 335 ENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDIRRD 394

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
           E+IRYV++KYG  RVAQI+TFG+L AKAA+RD+ R + +P   +D   KLIP+     + 
Sbjct: 395 EMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLGITLK 454

Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             A  +    RE    +   +R+ EI++++EGL RH S HAAG+++   PL+  V +  +
Sbjct: 455 -DAYEESQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQ-E 512

Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
             +D+ VTQ+    +E+ GL+K DFLGL+ LTLL+  + F+ ++
Sbjct: 513 GHNDVYVTQYPADALEELGLLKMDFLGLRNLTLLENIIKFIVKK 556


>gi|239994182|ref|ZP_04714706.1| putative DNA polymerase III alpha chain [Alteromonas macleodii ATCC
            27126]
          Length = 918

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 232/885 (26%), Positives = 396/885 (44%), Gaps = 46/885 (5%)

Query: 159  FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-RGYDRYRESQVVQLAYTHELPLVATNNS 217
                     +      +K      Y+  QR   G D +R +    L   +  P++A    
Sbjct: 13   LPSGKEAKDKHWAEWLQKHPSIDAYIGAQRLLDGRDHHRFAHYNHLQSAYPFPVIACTGV 72

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
            L    +      VL A+   T V +  R  ++       R+          + + NT  +
Sbjct: 73   LMHHADRLPLQHVLHAINVHTSVDKIGRDALSNA-ERSLRTVQKIKKLYPEKWIANTNAL 131

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
            A   +F L+      P  +  E         + LR +  AG++VR  +G         D 
Sbjct: 132  AHAFTFSLEELRYHYPAELVPEG----YTPTSYLRERVEAGIKVRFPEG------ITPDI 181

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
            RQ ++ EL +I   ++  +FL + D +Q+AK+  I    GRGS A SV  Y L IT +DP
Sbjct: 182  RQTIEKELTLIDEQEYEYFFLTIYDIVQFAKRQRILY-QGRGSAANSVVCYCLEITAVDP 240

Query: 398  LRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
             + S+LFERF++ +R   PD D+DF   RR+EVI+Y+  KYG ER A   T    + K+A
Sbjct: 241  RQISVLFERFISKERNEPPDIDVDFEHQRREEVIQYIYQKYGRERTAIAATVICYRFKSA 300

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
             +DVG+AL    SQ+D + K I        S+               +P V +L+ +++ 
Sbjct: 301  FKDVGKALGFSESQLDFVVKQINRRD----SVIPWKSQLAGLGLNPKEPRVQQLITLTEA 356

Query: 518  LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            L G  RH S H  G VI   PL  LVP+      +  + Q++   IE  GL+K D L L 
Sbjct: 357  LLGTPRHLSQHVGGFVISAGPLYDLVPVENAAMEERTIIQWDKDDIETLGLLKVDVLALG 416

Query: 578  TLTLLQKSLDFLAQRGVK---VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
             L+ ++++   + ++      +       DD + + ++    T+G+FQ+ES      L  
Sbjct: 417  MLSAIRRAFSLINKQYPVETSIPFITKLGDDKQVFDMICRADTVGVFQIESRAQMSMLPR 476

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYNN--RKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            ++P    D++  +++ RPGPI   +V+    R++G E I      ++ +L  T GV I+Q
Sbjct: 477  LKPRRYYDLVVQIAIVRPGPIQGDMVHPYLIRRHGNETISYPSKDVEKVLSRTMGVPIFQ 536

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFE 751
            EQV+Q+A + +G+S  EAD LRRAM    K+  + + +++ I G +  G   T A N+FE
Sbjct: 537  EQVIQLAMVAAGFSGGEADQLRRAMASWKKDGRIFEFRDKLIKGMTDKGYDSTFAHNLFE 596

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
             +  FA YGF +SH+A++AV++Y + W+K ++PVEF  A +           +  QDA++
Sbjct: 597  QIKGFAGYGFPESHSASFAVLAYVSCWLKFYFPVEFYVALLNSWPMGFYSPSQLVQDAKR 656

Query: 812  FNIQIMPPSVNTPCVDFKVG----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
             +I++  P VN   V+  +     +  I   L  IKG+   +++ I+E  +DK + ++E 
Sbjct: 657  HHIRVEAPCVNQSDVEHSLVVQGQEKYIQLGLKLIKGLSEASSQLIVENRSDKGYTNVEQ 716

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
                     L    LE+L  A AL     +R +    + +            T     +F
Sbjct: 717  LQQ----LSLKSNELEALASADALRTISGNRYETRWRIMD------------TQTRLPLF 760

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              +   ++DK      +    +     +    G   + HP+ + K   +   I       
Sbjct: 761  DTD-DFYADKNATPLDAAPTEAENLLEDYASTGLSVNNHPISLLKKQHKLKDISWSNSLK 819

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 + +++   V  +Q   T  G  + ++T  +         +
Sbjct: 820  DKTNKSVVKVLGAVTGRQAPGTAAG--VTFLTLEDDIGNMNVVVW 862


>gi|50365400|ref|YP_053825.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
 gi|50363956|gb|AAT75941.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
          Length = 992

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 287/1041 (27%), Positives = 476/1041 (45%), Gaps = 103/1041 (9%)

Query: 5    LEKSPSFVHL-QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +     F+ L  V S Y+  E  + +N+ +     +    +   +   ++   EF QKA 
Sbjct: 1    MSN---FIPLINVRSVYNFQESLIKINDYISFAKNEGFKHLFYCENKTMYGVAEFFQKAL 57

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
               I+PIIG  ++++ +                  I L+      Y              
Sbjct: 58   KENIKPIIGLSIELNDKKI----------------ITLIPKNKAAY-------------- 87

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
              K +                 +++   +  +       + +     L  +     +  +
Sbjct: 88   --KYTC----------------IISSNLNEDV-----KLNDEEIFDLLKKYVD---NNSF 121

Query: 184  VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +        + +  ++++          +  N   ++S+++ + +  L A+ ++   ++ 
Sbjct: 122  LITNVDNKNEFFNNAEIIN----TNDKKIFFNPIRYISDDEQDLYKGLFALKNNLTSTEA 177

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            ++     + Y           +        +  +                + + K     
Sbjct: 178  NKIYKINEAYPYADEISQIFPNSEEIGKYISDNVNLNIFED-------NEKHMAKFIAPD 230

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                 + L+ K +AGL+       +      ++Y QRL+ EL++I +  F+ YFLIV D+
Sbjct: 231  NMPSFSYLKQKCLAGLQHYFKN--VKHEPIKEEYIQRLNHELSIIEKTGFADYFLIVHDY 288

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            + +A++N+I VGPGRGS AGS+ ++ L IT IDP+ ++LLFERFLNP+R++MPD DIDF 
Sbjct: 289  VSFARRNDIIVGPGRGSAAGSLVSFLLRITTIDPIEYNLLFERFLNPERITMPDIDIDFQ 348

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             +RRDEVI Y+  KYG   VA I+T+ ++  K+A RD  R  Q+  + V+ + K + +D 
Sbjct: 349  DNRRDEVIEYLFEKYGKYNVATIVTYQTIAFKSAFRDACRIYQIDMNLVNLITKSLTDD- 407

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               +S   I    +  +          + ++ +KL G  R   THAAGI+I D  L  ++
Sbjct: 408  --YLSFDEILKTQKLIKEYSEKAEFKNIFKLVEKLIGCPRQTGTHAAGIIISDTDLRNVL 465

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIP 602
            P+ +   + +  TQF+M ++E  GLIK D LGL+ LT L++ LD + +       LS I 
Sbjct: 466  PIRQG-LNGIYQTQFDMNYLEDIGLIKMDLLGLRNLTTLKEILDLVKKNHNEDFTLSKID 524

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             +D +T+ +L    T GIFQLES GM   +  M+ + I DI A  SLYRPGP + I  Y 
Sbjct: 525  LNDAKTFKILREGNTTGIFQLESQGMTNLIIDMKVNNINDISAASSLYRPGPQEMIPDYI 584

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            N KN + ++  I   +  +L  T GVI+YQEQVMQI QL+  +SL +AD++RRAMGKK  
Sbjct: 585  NNKNNR-RVSLIDKSLANILLPTYGVIVYQEQVMQILQLVGNFSLGKADIVRRAMGKKQI 643

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            E M + K+ FI+ A  N  S   AV I+  + +FA YGFNKSHA AY+ I Y  AW K H
Sbjct: 644  EYMMEVKDEFINNAMANNYSNEKAVAIWNWIEQFAKYGFNKSHAIAYSYIGYWLAWFKAH 703

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT---------PCVDFKVGDN 833
            YP EF  A +   + N  K  ++ ++ +QF I+++ PSV             +++   +N
Sbjct: 704  YPAEFYTALLNGVVGNPSKTSRYIKEVKQFGIEVIKPSVKPAISKKLEDTIKLNYTSSEN 763

Query: 834  RIYYSLAAIKGVGTTTARHI--MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            RIY  L  IKG+G      +  +       FD L +F   + +K LN      L  AG+ 
Sbjct: 764  RIYMPLTLIKGIGRDFIATLNKVYEEHSNLFDDLNNFFFYMKNKGLNESNYTLLAKAGSF 823

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            DCFGY++  ++ + D I        +N      ++          KI        N  V 
Sbjct: 824  DCFGYNKSTMVANKDFIFSAMMAFNEN-----ISL------DKQTKIENLFEEELNEEVE 872

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               E+ V GFY S +PL   K            + V  +    + +   +   +  K + 
Sbjct: 873  SSYEKEVFGFYISSNPLTKLKNENAFFKPNDIIKLVENMND--VNIIGQISGIRVIKDKN 930

Query: 1012 GSRIGWVTFSEPAKEYEANFF 1032
               + +VT  +  +  +   F
Sbjct: 931  QKNMAFVTVFDDTESIDLTVF 951


>gi|306842636|ref|ZP_07475284.1| error-prone DNA polymerase [Brucella sp. BO2]
 gi|306287228|gb|EFM58719.1| error-prone DNA polymerase [Brucella sp. BO2]
          Length = 830

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 189/754 (25%), Positives = 332/754 (44%), Gaps = 48/754 (6%)

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               K  +  L +    G         I         +  ++ EL +IA++++  YFL V 
Sbjct: 25   PPGKTAQQHLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIAQLEYEPYFLTVY 79

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
            D +  A++  I    GRGS A SV  + L IT ++P    LLFERF++ +R   PD D+D
Sbjct: 80   DIVTHAREKGIL-CQGRGSAANSVVCFCLGITGVNPTEVDLLFERFISAERKEPPDIDVD 138

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  +RR+EV++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +  
Sbjct: 139  FEHERREEVMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWG 198

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                 +  Q I    R       +P + R +E++  L G  RH S H  G V+    L +
Sbjct: 199  LSGGGIDRQHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDE 254

Query: 542  LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD---- 597
             VP+           +++   I++ GL+K D L L  LT ++K+ D + Q   ++     
Sbjct: 255  TVPIGPAAMDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEK 314

Query: 598  --LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              L+ +P +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI
Sbjct: 315  LTLASLPREDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPI 374

Query: 656  DNIVVYNNRKNGKEKIVSIHP----------LIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
               +V+   +    +     P           +  +L +T+GV ++QEQ M+IA   + +
Sbjct: 375  QGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKF 434

Query: 706  SLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
            +  EA+ LRRAM    K   +   +++ I G    G  +T A N F  +  F +YGF +S
Sbjct: 435  TPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPES 494

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP 824
            HAA++A + Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN  
Sbjct: 495  HAASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFS 554

Query: 825  CVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
              D  + +       +      I G        ++    + P+ ++ED   R+   +L+R
Sbjct: 555  QWDNILEETPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIEDMHRRL---RLDR 610

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            R    L  A A       R   L ++  +            ++   +F     +   +  
Sbjct: 611  RAFTLLADADAFGSLDIDRRSALWAVRRL----------PNDETLPLFRAAAASELAQEP 660

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
              K     +S     +         GHPL   +  L   G+           G  +++A 
Sbjct: 661  RTKLPEMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQEGADGRRMKVAG 720

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +V  +Q+  + KG  + ++T  +         +P
Sbjct: 721  VVTVRQRPGSAKG--VVFLTIEDETGIANIVVWP 752


>gi|284045697|ref|YP_003396037.1| DNA polymerase III subunit alpha [Conexibacter woesei DSM 14684]
 gi|283949918|gb|ADB52662.1| DNA polymerase III, alpha subunit [Conexibacter woesei DSM 14684]
          Length = 1268

 Score =  393 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 237/977 (24%), Positives = 414/977 (42%), Gaps = 112/977 (11%)

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQ 187
              + L+ +     EGL+ L+G ++  +               L   +  FG D L+V LQ
Sbjct: 231  PFVSLADVAA-HAEGLVCLSGCAAHGVHDL----------DSLRLLRHAFGRDHLFVELQ 279

Query: 188  R-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS--QKD 244
            R +   DR R  ++ Q A   EL  VAT N+   +       D L+AV   T +   +  
Sbjct: 280  RPYLRDDRARNRRLQQFARELELRCVATGNTHAHARSRGPLQDALVAVRLHTTLDASEPG 339

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R           ++      +D P+A+  T  +A R  F L                   
Sbjct: 340  RRGNFSHVLTSPQAMAARFAADHPDAVAETARLADRLRFDLTQGLGYRY---------PG 390

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             E+E+  R  A    +    +   A      +  +RLD EL +I ++  +G+FL+  + +
Sbjct: 391  AEDESANRRLAEICGDRLAVRYDDASAADRAEAHRRLDQELRIIDKLGLAGFFLLHREML 450

Query: 365  QWAKKNNI------------PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
            + A++  +            P G GRGS   S+  Y   ++ +DP+   L   RFLN D 
Sbjct: 451  ELAREVAVEVRGPDTARSLLPPGRGRGSSVSSIVCYLTGLSHVDPVANDLFIGRFLNEDL 510

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
             ++PD D+DF +D R+ +I  + + +GH   A +  F + +A+ A+R++G+AL +P  ++
Sbjct: 511  TALPDIDLDFPRDVRERLIPRIHDVFGHRNSALVAAFPTYRARGAIRELGKALGLPPGEI 570

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            +R+ +      A  V+          R A         L  ++++  GL RH S H+ G+
Sbjct: 571  ERVARGSEGWSARDVARDVATALGERRLASGR---WLWLARLAEQAHGLPRHLSQHSGGM 627

Query: 533  VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ- 591
            V+  RPLS   P+         + Q++      AG +K D LGL  L+ ++++++ +AQ 
Sbjct: 628  VVATRPLSDCCPIVPAAMEGRQIVQWDKDSCADAGFLKIDLLGLGMLSAVERAVEAIAQT 687

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
            R  ++DLS IP+DD  TY  +    T G+FQ+ES     +L   +P  +E++   V++ R
Sbjct: 688  RDERIDLSRIPYDDRPTYEAIQNAETTGVFQIESRAQMASLRRTRPASLEELTIQVAIVR 747

Query: 652  PGPIDNIVVYNNRKNGK-------EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            PGPI    V    +  +         I   HP +   LKET G II+Q+QV+++A   +G
Sbjct: 748  PGPIQGGAVNPYIERRQRLRVDPGFTIPYDHPSLVEPLKETLGTIIFQDQVIEVAMAFAG 807

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISG---ASKNGISKTIAVNIFELLAKFADYGF 761
            ++  +A+ LRRAM +K  E   +   R       A+ + ++  +A  +F+++  F+ +GF
Sbjct: 808  FTPGQAEGLRRAMSRKRSEAAIEAHHRRFVAGALATHDDVTPELAERVFQMVRGFSGFGF 867

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             K+H AA+ +++YQ+ W++ HYP EFL A +  +            +A++  I+++ P +
Sbjct: 868  PKAHGAAFGLLAYQSTWLRVHYPTEFLCALLNEQPMGFYPPDALVHEAQRRGIEVLAPEI 927

Query: 822  NTPCVDFKVGDN-------------------------------------------RIYYS 838
            N   V+  V                                              R+   
Sbjct: 928  NASEVECTVEVGPPAGSAPPAGSALPNRAGLLVPQTSRPALIPPTAPTAPDPPSPRVRIG 987

Query: 839  LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GY 896
            L  ++GV    AR ++EA  A  PF  + D  +R  + +     LE+L ++GA D   G 
Sbjct: 988  LGYVRGVQDHDARALVEARAAGGPFRDVADLAARAGAGR---PALETLAWSGACDALAGG 1044

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
             R   L  L       +     +      +             L      +       + 
Sbjct: 1045 DRRVALWRLGVAVPGRRVPGGTQLALPLTLPG--------APELRALGEWDG---MLADY 1093

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
               G     HPL + +P L   G     +  +      +R+A MVV++Q+  T  G  I 
Sbjct: 1094 DTTGLTARTHPLRLLRPSLPA-GTVASRDLASLPHNAQVRVAGMVVARQRPGTASG--IV 1150

Query: 1017 WVTFSEPAKEYEANFFP 1033
            ++   +          P
Sbjct: 1151 FLLIEDEHGTVNLVVKP 1167



 Score =  132 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 16/116 (13%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           S+V L  HS++S L+GA   + +    A     A+A+TD +N+  A+EF++ A A G++P
Sbjct: 4   SYVELHAHSAFSFLDGASLPDELAAAAAELGHEALALTDHDNICGAMEFARSAQALGLRP 63

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           I G +L +D                    + LLV +  G++ L  L++  +   +G
Sbjct: 64  IHGAELTLDDGR----------------HLTLLVESEHGWRNLCRLITLAHAHTRG 103


>gi|58038349|ref|YP_190318.1| DNA polymerase III alpha subunit [Gluconobacter oxydans 621H]
 gi|71151825|sp|Q5HXU1|DNAE2_GLUOX RecName: Full=Error-prone DNA polymerase
 gi|58000763|gb|AAW59662.1| DNA polymerase III alpha subunit [Gluconobacter oxydans 621H]
          Length = 901

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 212/751 (28%), Positives = 334/751 (44%), Gaps = 32/751 (4%)

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
              RF   E +   +  +  L     A L  R   GA        +   ++  EL +I  +
Sbjct: 117  PGRFNPTETERTGESAQETLTRLVQAALPRRYPAGA------PPEVETQIAHELRLIGSL 170

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             ++ YFL V   ++ A+   I V  GRGS A S   Y L IT IDP+R  LLFERF++ +
Sbjct: 171  SYAPYFLTVNTIVRHARSLGI-VCQGRGSAANSAVCYVLGITSIDPVRSGLLFERFISTE 229

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
            R   PD D+DF  DRR+EVI+++   YG  R A   T    Q K ALR+VG+ L +P   
Sbjct: 230  RQEPPDIDVDFESDRREEVIQWIYRHYGRHRAALCATVQRYQPKGALREVGKVLGLPEDL 289

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
              +L K I +  A P   +A A D               L   ++ L G  R   TH  G
Sbjct: 290  TGQLSKHIASSLADPDLCKARAADLGLNLKDRRLSLTFHL---ARLLLGFPRQLGTHPGG 346

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             V+ +  L +LVP+         +  ++   I+    +K D LGL  L  L++  + L  
Sbjct: 347  FVLTEDRLDELVPLMPTAMDGRQIIVWDKDDIDVLRFMKVDVLGLGMLGCLRRGFELLHT 406

Query: 592  -RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                ++DL+ IP +D +TY ++    TLG FQ+ES      L  M+P    D++  V++ 
Sbjct: 407  VYQTRMDLAAIPAEDPQTYRMVQKADTLGTFQIESRAQMSMLPRMKPATFYDLVIQVAIV 466

Query: 651  RPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGPI   +V+    R+   E +      +  +L +T GV ++QEQ MQ+A   +G++  
Sbjct: 467  RPGPIQGDMVHPYLRRREKLEPVTYPSETLRGILGKTLGVPLFQEQAMQVAIHCAGFTPG 526

Query: 709  EADVLRRAMGKKIKEE-MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            EAD LRRAM        +   +++ ++G   NG  +  A   F  L  F  YGF +SHAA
Sbjct: 527  EADQLRRAMATFKMTGGVSPFRDKLVNGMLANGYEQEFAEQTFAQLEGFGSYGFPESHAA 586

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
            ++A+I+Y +AWMK HYP  F AA +  +        +  QDA++  +++ P  +N    D
Sbjct: 587  SFALIAYASAWMKCHYPDVFCAALLNSQPMGFYAPSQIVQDAQRHGVEVRPICINASRWD 646

Query: 828  FKVGDN------RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
              +          +      +KG+       ++ A     ++S++D   R D   +    
Sbjct: 647  CTLERGRNGRHAAVRLGFRMVKGLANGHGAALIAARM-PDYESIDDVWRRAD---VPVAA 702

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE 941
            L+ L  A A   FG  R   L S+  +   A  + +                   +ITL 
Sbjct: 703  LKCLAEADAFRVFGQMRRAALWSIKGLADTALPLFEAADRGRNFPL---PEVIEPEITLP 759

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
                 +       + R  G   +GHP+   +  LRK GI    +      G  I+L  +V
Sbjct: 760  M---MSERASVHEDYRATGLSLNGHPVAFLREGLRKEGIVRCGDLPYLRDGRRIQLTGLV 816

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +Q+  T  G+   +VT  +         +
Sbjct: 817  LMRQRPGTANGTM--FVTIEDETGTANLIVW 845


>gi|289763553|ref|ZP_06522931.1| DNA polymerase III alpha subunit dnaE2 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis GM 1503]
 gi|289711059|gb|EFD75075.1| DNA polymerase III alpha subunit dnaE2 (DNA nucleotidyltransferase)
            [Mycobacterium tuberculosis GM 1503]
          Length = 861

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 224/805 (27%), Positives = 375/805 (46%), Gaps = 53/805 (6%)

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
                 +                         P  +    E+  RC+F LQ+ AP LP F 
Sbjct: 51   GRWTPRPGGWLRWVGRTCGPGRRWPGCSRGAPRRVTAAAELGERCAFGLQLIAPRLPPFD 110

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              +       E++ LR+  +AG   R      A   ++Q     ++ EL VIA+++F GY
Sbjct: 111  VPDG----HTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGY 161

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL+V D  ++ + N+I    GRGS A S   YAL +T +DP+   LLFERFL+P R   P
Sbjct: 162  FLVVHDITRFCRDNDIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPP 220

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D DID   D+R++VI+YV +KYG +  AQ+    + + ++A+RD+ RAL     Q D   
Sbjct: 221  DIDIDIESDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVRDMARALGFSPGQQDAWS 280

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            K + +       +  I +               ++++++ ++  L RH   H+ G+VI D
Sbjct: 281  KQVSHWTGQADDVDGIPE---------------QVIDLATQIRNLPRHLGIHSGGMVICD 325

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VK 595
            RP++ + P+     ++  V Q++       GL+KFD LGL  L+ L  + D +A+   ++
Sbjct: 326  RPIADVCPVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSALHYAKDLVAEHKGIE 385

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            VDL+ +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI
Sbjct: 386  VDLARLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVALIRPGPI 445

Query: 656  D--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
               ++  Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S +EAD L
Sbjct: 446  QGGSVHPYIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSAAEADQL 505

Query: 714  RRAM-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            RRAM  K+  E M + + RF  G    +G    +   I+E L  FA++GF +SHA ++A 
Sbjct: 506  RRAMGSKRSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESHALSFAS 565

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            + + +AW K H+P  F AA +  +       +    DAR+  + +  P VN         
Sbjct: 566  LVFYSAWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASLAHATCE 625

Query: 832  --DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                 +   L A++ +G   A  ++    A+ PF SL D  SRV   +L+   +E+L  A
Sbjct: 626  NAGTEVRLGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQVEALATA 682

Query: 889  GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS 948
            GAL CFG SR +                   T + + +      +      +      + 
Sbjct: 683  GALGCFGMSRRE----------ALWAAGAAATGRPDRLPGVGSSS-----HIPALPGMSE 727

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
                  +    G     +P    +  L  MG+   E   +   G+ + +A  V  +Q+  
Sbjct: 728  LELAAADVWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPA 787

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFFP 1033
            T +G  + ++   +          P
Sbjct: 788  TAQG--VTFINLEDETGMVNVLCTP 810


>gi|171920472|ref|ZP_02931773.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 1 str.
            ATCC 27813]
 gi|171902930|gb|EDT49219.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 1 str.
            ATCC 27813]
          Length = 969

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 297/1032 (28%), Positives = 485/1032 (46%), Gaps = 110/1032 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F++L VHS YSLL   LS+++++     ++QP + +TD NN++  +EF  KA A  + PI
Sbjct: 2    FINLNVHSHYSLLNSTLSIDDLIKYALDNKQPYVCLTDLNNMYGCIEFYDKAKAHNLTPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + +                      +V       GY +LI+  S +    +    ++
Sbjct: 62   IGLEFEYQNAT-----------------LVAYAKNYNGYLKLIKWSSWIMTSKEF--EIQ 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
                 L       +I+      G I                     +F +   Y   Q H
Sbjct: 103  DDFEDL-------IIV---CKKGDI---------------------VFKNSNFY---QTH 128

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                                  +A  +  + ++ D      ++A+ +   +         
Sbjct: 129  DQN---------------APNAIALQSVFYANKSDKIVFLAMLAIKNDLKLEDFKNCCDF 173

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +++        S FS         +    +    L+V    LP  I             
Sbjct: 174  DNNHFLTDYLAQSFFS------PIALNNLNKVLNELKVQIHDLPINIPVYDKQNSIISSE 227

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L+   ++GL+ RL       G   + Y QRL +EL+VI   +F  YFLIV DFI +AK 
Sbjct: 228  ILKQLCISGLKKRLNAH---DGQVNKIYVQRLKYELDVINEKQFDDYFLIVYDFINFAKS 284

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I VGPGRGS AGS+ AY L ITDIDP++ +L+FERFLNP R SMPD D D   ++RD 
Sbjct: 285  NGIIVGPGRGSAAGSLVAYCLHITDIDPIKHNLIFERFLNPTRKSMPDIDTDIMDEKRDL 344

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI Y+  KYG++ VA I+TF  L+AK A+RDVGR L +    +D++CK I  +    +  
Sbjct: 345  VIEYLFEKYGNDHVAYILTFQRLKAKMAIRDVGRILGIDLKVIDKICKNIKPEYDEDLD- 403

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             AI  ++  +E  L       L EIS+KL    R   THAAGI++ D  +S ++P+    
Sbjct: 404  LAIKKNTILKEMYLL---HKELFEISKKLINAPRQIGTHAAGIILSDSLISNIIPIQLG- 459

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHET 608
             +D P++Q++M+++E+ GLIK D LGLK LT++   L  + +    K+DL  I ++D   
Sbjct: 460  INDRPLSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKMIHENQNKKIDLFNIDYNDKFV 519

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            +  L    T GIFQLES GM++ L  ++P  IEDI  + +L+RPGP  NI  +  R+  +
Sbjct: 520  FEDLAKARTNGIFQLESPGMKKVLLKVKPHNIEDISIVSALFRPGPQQNIKTFVERRFKR 579

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E+    +     +L+ T G+I+YQEQV+++ + ++ + ++ +D  RRA+ KK ++ + + 
Sbjct: 580  EEFSYWNEATRKILEPTYGIIVYQEQVIELVKTIANFDIATSDNFRRAISKKDEKILIQL 639

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K+ FI+GA  N   + +   IFE +  FA YGFN SH+ AY+ ISY  A++K +Y +EFL
Sbjct: 640  KDDFINGALNNNYKQPLVNQIFEYIFSFAHYGFNHSHSLAYSYISYWLAYLKHYYTLEFL 699

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKGVG 846
            +  ++    + +K+  +  +A++FNI I  P +     DF +   +  I +    IKG G
Sbjct: 700  SVLLSHTSASKDKLLSYLNEAKEFNISIKGPDIQYFSNDFVIDTQKQIIRFGFKTIKGFG 759

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKK---LNRRVLESLVFAGALDCFGYSRMQLLQ 903
                + I  A       +L D+ S +D+ K   ++ + +E L+  G  D FG        
Sbjct: 760  DELLKKIKSALQK---STLSDYISYIDALKKGNVSLKNIEILIRVGTFDSFG-------- 808

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR-FENEQRVLGFY 962
             ++ +       E          F        D          + + R  ++E + LG  
Sbjct: 809  -INRLFLLNNLNEIFEKTGLNGHFFDLNLVGLDYAK-----DMSVNDRYLDDEIQYLGID 862

Query: 963  FSGHPLDVYKPILRKMGIK-GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV-TF 1020
             +      YK  +    +K   ++           + A V++ +Q KT+ G+ I ++ T 
Sbjct: 863  LNSLNYANYKTEIDYNKLKYTIKDFYEINTNYETNILAQVLNIKQSKTKNGNDIFYLETL 922

Query: 1021 SEPAKEYEANFF 1032
             +  K+     F
Sbjct: 923  IDNKKQT-LTIF 933


>gi|331014284|gb|EGH94340.1| error-prone DNA polymerase [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 721

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 214/761 (28%), Positives = 352/761 (46%), Gaps = 50/761 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L   S++S   GA S   + D+       A+AITD   L   +   Q +   G+  I
Sbjct: 5   YAELHCLSNFSFQRGASSARELFDRALRHGYAALAITDECTLAGIVRAWQASKDTGLPLI 64

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +G ++ ++                  P IVLLV    GYQ L  L++      + K   R
Sbjct: 65  VGSEMHLENG----------------PKIVLLVENLTGYQALCTLITVARRRAK-KGEYR 107

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           + L     +    L +      G         +           ++ F +RL++ ++ HR
Sbjct: 108 LLLEDFDHLPGGLLAIWLADIEGDAQACLAQGN---------WLRERFAERLWLGVELHR 158

Query: 191 G-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQKDRPRV 248
           G  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V         
Sbjct: 159 GADDEQRLADLLALAQSLAIPAVASGDVHMHARGRRALQDTITAIRHHTTVAEAGHLLFA 218

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             + +L++   +   + D   A   ++ IARRC+F         P  +  +     +   
Sbjct: 219 NGERHLRSLDALAEHYPDWLLA--ESLRIARRCTFTFDQLQYEYPHELVPKG----QTST 272

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
           + LR     G+  R  +G           R +++ EL +I   KF  YFL V D +++A+
Sbjct: 273 SWLRELTERGIRRRWPRGLSVAA------RAQVEKELALITEKKFDSYFLTVHDIVEFAR 326

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             +I    GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  DRR+
Sbjct: 327 SQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISKERDEPPDIDVDFEHDRRE 385

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
           EVI+Y+  +YG  R A      +     ALRDV + L +P  Q++ L            S
Sbjct: 386 EVIQYIFRRYGRGRAALTAVASTYHGSGALRDVAKVLGLPPDQINALADAFSRWSDALPS 445

Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            + + +           P + R+L ++ +L G  RH S H  G VI + PL  LVP+   
Sbjct: 446 AERLREY----GFDAETPILKRVLTLTGELIGFPRHLSQHPGGFVISEHPLDTLVPVENA 501

Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607
             ++  + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +P DD  
Sbjct: 502 AMAERTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKQWTLASLPGDDRP 561

Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRK 665
           TY +++   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V+    R+
Sbjct: 562 TYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLRRR 621

Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
           N +E I    P +  + + T GV ++QEQVM++A + + Y+  EAD LRRAM    +   
Sbjct: 622 NKEEAITYP-PKLKSVFERTLGVPLFQEQVMEVAIIAADYTPGEADQLRRAMAAWKRHGG 680

Query: 726 -DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            D  +ER  +G   NG     A  IFE +  F  YGF +SH
Sbjct: 681 LDPHRERLRTGMLANGYEADFADRIFEQIKGFGSYGFPESH 721


>gi|307086146|ref|ZP_07495259.1| putative PHP domain protein [Mycobacterium tuberculosis SUMu012]
 gi|308364390|gb|EFP53241.1| putative PHP domain protein [Mycobacterium tuberculosis SUMu012]
          Length = 716

 Score =  389 bits (1000), Expect = e-105,   Method: Composition-based stats.
 Identities = 223/747 (29%), Positives = 373/747 (49%), Gaps = 39/747 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
            A     A+A+TD + L+ A+ F++ A    ++ + G +L +        T + + P P 
Sbjct: 1   AARLGLCALALTDHDGLYGAVRFAEAAAELDVRTVFGAELSL------GATARTERPDPP 54

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
            P +++L    EGY+RL   ++  +L    K   R     L E       +LTG   G +
Sbjct: 55  GPHLLVLARGPEGYRRLSRQLAAAHLAGGEKGKPRYDFDALTEAAGGHWHILTGCRKGHV 114

Query: 156 DRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVA 213
            +A        A++ L      F   R+ + L  H    D  R + +  LA    + +VA
Sbjct: 115 RQALSQGGPAAAQRALADLVDRFTPSRVSIELTHHGHPLDDERNAALAGLAPRFGVGIVA 174

Query: 214 TNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALE 272
           T  + F           + A+     +             +L++  EM  +F+  PEA+ 
Sbjct: 175 TTGAHFADPSRGRLAMAMAAIRARRSLDSAAGWLAPLGGAHLRSGEEMARLFAWCPEAVT 234

Query: 273 NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
              E+  RC+F LQ+ AP LP F   +       E++ LR+  +AG   R      A   
Sbjct: 235 AAAELGERCAFGLQLIAPRLPPFDVPDG----HTEDSWLRSLVMAGARERYGPPKSAPRA 290

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
           ++Q     ++ EL VIA+++F GYFL+V D  ++ + N+I    GRGS A S   YAL +
Sbjct: 291 YSQ-----IEHELKVIAQLRFPGYFLVVHDITRFCRDNDIL-CQGRGSAANSAVCYALGV 344

Query: 393 TDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
           T +DP+   LLFERFL+P R   PD DID   D+R++VI+YV +KYG +  AQ+    + 
Sbjct: 345 TAVDPVANELLFERFLSPARDGPPDIDIDIESDQREKVIQYVYHKYGRDYAAQVANVITY 404

Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512
           + ++A+RD+ RAL     Q D   K + +       +  I +               +++
Sbjct: 405 RGRSAVRDMARALGFSPGQQDAWSKQVSHWTGQADDVDGIPE---------------QVI 449

Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFD 572
           +++ ++  L RH   H+ G+VI DRP++ + P+     ++  V Q++       GL+KFD
Sbjct: 450 DLATQIRNLPRHLGIHSGGMVICDRPIADVCPVEWARMANRSVLQWDKDDCAAIGLVKFD 509

Query: 573 FLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            LGL  L+ L  + D +A+   ++VDL+ +   +   Y +L    ++G+FQ+ES      
Sbjct: 510 LLGLGMLSALHYAKDLVAEHKGIEVDLARLDLSEPAVYEMLARADSVGVFQVESRAQMAT 569

Query: 632 LEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
           L  ++P    D++  V+L RPGPI   ++  Y  R+NG + ++  HP + P L++T GV 
Sbjct: 570 LPRLKPRVFYDLVVEVALIRPGPIQGGSVHPYIRRRNGVDPVIYEHPSMAPALRKTLGVP 629

Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASK-NGISKTIAV 747
           ++QEQ+MQ+A   +G+S +EAD LRRAM  K+  E M + + RF  G    +G    +  
Sbjct: 630 LFQEQLMQLAVDCAGFSAAEADQLRRAMGSKRSTERMRRLRGRFYDGMRALHGAPDEVID 689

Query: 748 NIFELLAKFADYGFNKSHAAAYAVISY 774
            I+E L  FA++GF +SHA ++A + +
Sbjct: 690 RIYEKLEAFANFGFPESHALSFASLVF 716


>gi|295839717|ref|ZP_06826650.1| DNA polymerase III, alpha subunit [Streptomyces sp. SPB74]
 gi|295827626|gb|EFG65512.1| DNA polymerase III, alpha subunit [Streptomyces sp. SPB74]
          Length = 904

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 224/914 (24%), Positives = 374/914 (40%), Gaps = 56/914 (6%)

Query: 5   LEKSPS-----FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
           + +SP      F HL+  S  S   GA     +  + A     A+A+TD + +   + F+
Sbjct: 1   MTRSPGLSGPGFAHLRAVSGNSARYGASHPEALAARAAERGMDAVALTDRDTVAGTVRFA 60

Query: 60  QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP----------FPTVPSIVLLVST-AEG 108
           +     G++P+ G  L +D          G               + P    L    A G
Sbjct: 61  KACAEHGVRPLFGADLAVDAPAARDARGGGGRRRAPVRGGAFVDESAPRATFLARDGARG 120

Query: 109 YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
           +  L  LV+  +    G++   +          EGL +L G     I RA        A 
Sbjct: 121 WASLCALVTAAH--AGGERPPLLPWD---ANQGEGLTVLLG-PESDIGRALAAGRPDRAA 174

Query: 169 KRLLTFKKLFGDRLYVNLQRHRGYDR-----YRESQVVQLAYTHELPLVATNNSLFLSEE 223
           + L  +++ +GD L +    H             ++ V  A    +  V TN   +    
Sbjct: 175 RLLAPWRERYGDALRLEAVHHGRDGTGPGSLRLAARTVGFAAEQGIRPVLTNAVRYADPG 234

Query: 224 DYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
                DVL A      +                             A           + 
Sbjct: 235 QGRIADVLDAARRLVPIDPAKGLDSGERWLKDAGRMAREAERITTAAGFGPGAAGALLAH 294

Query: 284 ILQVHAPILPRFIEKECDDIQKEEENELR--------NKAVAGLEVRLAQGAIAKGYHAQ 335
             +  A  L    +       +  E  L             +     + +    +G  A+
Sbjct: 295 TARTAAECLVDPEDDLGLGSVRFPEPRLVGAGARTAQRALASRAAAGMVRLGHDRGPGAR 354

Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
            Y +R+  EL++IA   F+ YFL VA  +   +   I V   RGSGAGS+  + + I   
Sbjct: 355 AYWERMHHELDIIAHHDFASYFLTVARVVDDVRDLGIRVA-ARGSGAGSLVNHLIGIAHA 413

Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
           DP+   LL ERFL+  R  +PD DID    RR EV R +  ++G ERVA +    + + +
Sbjct: 414 DPVEHGLLMERFLSKRRSVLPDIDIDVESARRIEVYRAILGRFGPERVATVAMPETYRVR 473

Query: 456 AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
            A+RDVG AL +  + +DR+    P+  A      A+ +                  E+ 
Sbjct: 474 HAIRDVGAALSLDPADIDRIATAFPHIRARDA-RTAMDELPELASVAAEREKYGTFWELV 532

Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
           + L+ L R  + H  G+++ D  L    P+       LP+ QF+ + +E  GL+K D LG
Sbjct: 533 EGLDALPRGVAMHPCGVLLSDASLLSRTPVVPTSGEALPMAQFDKEDVEDLGLLKLDVLG 592

Query: 576 LKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
           ++  + +  +L +     G   D+  IP  D +TY L+ +  TLG FQ+ES G R  +  
Sbjct: 593 VRMQSAMAHALSELDRATGEAPDIDAIPPGDEKTYQLIRSTETLGCFQIESPGQRDLVGR 652

Query: 635 MQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           +QP    D++  +SL+RPGP+   +   +   ++G+  +   HP + P L++T GV+++ 
Sbjct: 653 LQPSTFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRYPHPDLAPALEDTYGVVVFH 712

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQV+ +   ++G    EAD +RR +     +   + +  F   A++ G         +E+
Sbjct: 713 EQVIDLVHTMTGCGRDEADRVRRGLSD--PDSQGRIRFWFAQRAAERGYDAETVTRTWEI 770

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
           +  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +    DAR+ 
Sbjct: 771 VEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADARRR 829

Query: 813 NIQIMPPSVNTPCVDFKVG----------DNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
           ++ I+P  VN      ++              +   LA + G+       I  A   +P+
Sbjct: 830 DVPILPVDVNHSAPAHRIELVSEEGPPAARWGVRLGLADVHGMSEAEGERIATA---QPY 886

Query: 863 DSLEDFCSRVDSKK 876
            SL DF  R    +
Sbjct: 887 TSLLDFWQRARPSR 900


>gi|13357977|ref|NP_078251.1| DNA polymerase III DnaE [Ureaplasma parvum serovar 3 str. ATCC
            700970]
 gi|170762126|ref|YP_001752499.1| DNA polymerase III DnaE [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|183508625|ref|ZP_02958129.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 14 str.
            ATCC 33697]
 gi|186701626|ref|ZP_02971330.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 6 str.
            ATCC 27818]
 gi|14194693|sp|Q9PQ74|DPO3A_UREPA RecName: Full=DNA polymerase III subunit alpha
 gi|11356840|pir||D82895 DNA polymerase III alpha chain 2 UU415 [imported] - Ureaplasma
            urealyticum
 gi|6899403|gb|AAF30826.1|AE002138_13 DNA polymerase III alpha chain 2 [Ureaplasma parvum serovar 3 str.
            ATCC 700970]
 gi|168827703|gb|ACA32965.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 3 str.
            ATCC 27815]
 gi|182676084|gb|EDT87989.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 14 str.
            ATCC 33697]
 gi|186700858|gb|EDU19140.1| DNA polymerase III subunit alpha [Ureaplasma parvum serovar 6 str.
            ATCC 27818]
          Length = 969

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 298/1032 (28%), Positives = 485/1032 (46%), Gaps = 110/1032 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F++L VHS YSLL   LS+++++     ++QP + +TD NN++  +EF  KA A  + PI
Sbjct: 2    FINLNVHSHYSLLNSTLSIDDLIKYALDNKQPYVCLTDLNNMYGCIEFYDKAKAHNLTPI 61

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG + +                      +V       GY +LI+  S +    +    ++
Sbjct: 62   IGLEFEYQNAT-----------------LVAYAKNYNGYLKLIKWSSWIMTSKEF--EIQ 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD-RLYVNLQRH 189
                 L       +I+      G I                     +F     Y   Q H
Sbjct: 103  DDFDDL-------IIV---CKKGTI---------------------VFKSPNFY---QTH 128

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                                  +A  +  + ++ D      ++A+ +   +         
Sbjct: 129  DQN---------------APNAIALQSVFYANKNDKIVFLAMLAIKNDLKLEDFKNCCDF 173

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             +++  N +   S FS         +    +    L+V    LP  I             
Sbjct: 174  DNNHFLNDNLAQSFFS------PIALNNLNKVLNELKVQIHDLPINIPVYDKQNSIISSE 227

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             L+   ++GL+ RL       G   + Y QRL +EL+VI   +F  YFLIV DFI +AK 
Sbjct: 228  ILKQLCISGLKKRL---NANDGQVNKIYVQRLKYELDVINEKQFDDYFLIVYDFINFAKS 284

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N I VGPGRGS AGS+ AY L ITDIDP++ +L+FERFLNP R SMPD D D   ++RD 
Sbjct: 285  NGIIVGPGRGSAAGSLVAYCLHITDIDPIKHNLIFERFLNPTRKSMPDIDTDIMDEKRDL 344

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            VI Y+  KYG++ VA I+TF  L+AK A+RDVGR L +    +D++CK I  +    +  
Sbjct: 345  VIEYLFEKYGNDHVAYILTFQRLKAKMAIRDVGRILGIDLKVIDKICKNIKPEYDEDLD- 403

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
             AI  ++  +E  L       L EIS+KL    R   THAAGI++ D  +S ++P+    
Sbjct: 404  LAIKKNTILKEMYLL---HKELFEISKKLINAPRQIGTHAAGIILSDSLISNIIPIQLG- 459

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHET 608
             +D P++Q++M+++E+ GLIK D LGLK LT++   L      +  K+DL  I ++D   
Sbjct: 460  INDRPLSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKMIYENQNKKIDLFNINYNDKFV 519

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            +  L    T GIFQLES GM++ L  ++P  IEDI  + +L+RPGP  NI  +  R+  +
Sbjct: 520  FEDLAKARTNGIFQLESPGMKKVLLKVKPQNIEDISIVSALFRPGPQQNIKTFVERRFKR 579

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E+    +     +L+ T G+I+YQEQV+++ + ++ + ++ +D  RRA+ KK ++ + + 
Sbjct: 580  EEFSYWNEATRKILEPTYGIIVYQEQVIELVKTIANFDIATSDNFRRAISKKDEKILIQL 639

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K+ FI+GA  N   + +   IFE +  FA YGFN SH+ AY+ ISY  A++K +Y +EFL
Sbjct: 640  KDDFINGALNNNYKQPLVNQIFEYIFSFAHYGFNHSHSLAYSYISYWLAYLKHYYTLEFL 699

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--IYYSLAAIKGVG 846
            +  ++    + +K+  +  +A++FNI I  P +     DF +   +  I +    IKG G
Sbjct: 700  SVLLSHTSASKDKLLSYLNEAKEFNISIKGPDIQYFSNDFVIDTQKQIIRFGFKTIKGFG 759

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKK---LNRRVLESLVFAGALDCFGYSRMQLLQ 903
                + I  A       +L D+ S +D+ K   ++ + +E L+  G  D FG        
Sbjct: 760  DELLKKIKSALQK---STLSDYISYIDALKKGNVSLKNIEILIRVGTFDSFG-------- 808

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR-FENEQRVLGFY 962
             ++ +       E          F        D          + + R  ++E + LG  
Sbjct: 809  -INRLFLLNNLNEIFEKTGLNGHFFDLNLVGLDYAK-----DMSVNDRYLDDEIQYLGID 862

Query: 963  FSGHPLDVYKPILRKMGIK-GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV-TF 1020
             +      YK  +    +K   ++           + A V++ +Q KT+ G+ I ++ T 
Sbjct: 863  LNSLNYANYKTEIDYNKLKYTIKDFYEINTNYETNILAQVLNIKQSKTKNGNDIFYLETL 922

Query: 1021 SEPAKEYEANFF 1032
             +  K+     F
Sbjct: 923  IDNKKQT-LTIF 933


>gi|83319615|ref|YP_424605.1| DNA-directed DNA polymerase III (polc) [Mycoplasma capricolum subsp.
            capricolum ATCC 27343]
 gi|83283501|gb|ABC01433.1| DNA-directed DNA polymerase III (polc) [Mycoplasma capricolum subsp.
            capricolum ATCC 27343]
          Length = 986

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 281/1026 (27%), Positives = 466/1026 (45%), Gaps = 94/1026 (9%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQP-AIAITDTN---NLFSALEFSQKACAAGIQP 69
            L + S Y+ LE  +++++ +  I  +    A      N    ++   EF +KA    I+P
Sbjct: 7    LTIKSEYNFLESLITIDSYIKFIKKNNFSYAF----YNETHTMYGVAEFFKKAIDNNIKP 62

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            IIG  L+++                    + +     +GYQ L  L S  +L D      
Sbjct: 63   IIGLTLELEEN-----------------KLCIYAKNRQGYQILNYLSS--FLNDGFSHHD 103

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
                 ++  +    +I++  G    +D                  K    +  Y      
Sbjct: 104  YEIKEYILNLVNNNVIVI--GLISDLDFKIS-------------LKNQLNNDFY------ 142

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                               L     N   +L   D    ++L A+  +  + Q       
Sbjct: 143  -------------DVKELNL---YFNQISYLDINDQRIFNILNAIKTNKTIDQIQNINNY 186

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                +   S+  S+ +      E   ++                + + K  +        
Sbjct: 187  FYPDIDYLSKNYSLENIKKVISEINSKVDFNLFDS-------NEKHLVKYKNINNLSSFE 239

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR   +  L+    Q  I      + Y  RL++EL +I +M FS YFLIV+D++ +AKK
Sbjct: 240  YLRQVCLLSLKK--YQQKIKPNLDLKLYINRLNYELEIIKQMGFSDYFLIVSDYVNFAKK 297

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
            N+I VGPGRGS AGS+ +Y L ITDIDPL + LLFERFLNPDR ++PD D+DF  +RR+E
Sbjct: 298  NDILVGPGRGSAAGSLISYLLRITDIDPLEYDLLFERFLNPDRSNLPDIDLDFQDNRREE 357

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V+ Y+  KYG   V  I T+ ++  K A RDV R   +    V+++ K++          
Sbjct: 358  VLEYLFEKYGKNHVGMITTYQTIGYKMAWRDVCRVFNIDLLIVNKISKVLDQYTNSDFLE 417

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                 +++       +     +     K+ GL R  STHAAGIV+ D  L +LVP+ +  
Sbjct: 418  FI--KENKLLNDYFQNDLFKEIFITMHKIVGLPRQTSTHAAGIVLTDCDLRELVPI-KIG 474

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHET 608
             + +  TQF+M +++  GLIK D LGL+ LT +Q+        + +K+ L+ I  +D + 
Sbjct: 475  FNGINQTQFDMNYLDALGLIKMDILGLRNLTTIQEIKHLIYLNQNLKISLNKIDLNDKKA 534

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
            + LL  K T GIFQLES GM   +  MQ D IE I    +LYRPGP + I +Y   K   
Sbjct: 535  FELLKNKQTSGIFQLESKGMTDLISKMQVDSIELISIASALYRPGPQEMIPIYLENKKTN 594

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             K   I   +  +LK T G+I+YQEQVMQ+   ++ +S ++AD++RRAM KK  + M   
Sbjct: 595  -KFKIIDKSVYEILKPTYGIIVYQEQVMQMLNKVANFSYAKADIIRRAMSKKNNKVMQSM 653

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K  FI+ A KN  S   A  I+  + KF++YGFNKSH+ +Y+ ISY  A+ K H+  EF 
Sbjct: 654  KLEFINSAIKNNFSYNKANLIWNWIEKFSNYGFNKSHSISYSYISYWLAYFKAHFTTEFY 713

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
             + +   + N  K +++ ++   + I++  PSV     ++K+ + +IY  L  IK +G  
Sbjct: 714  TSLLDQNIGNEIKTQQYIKELYDYKIKVNKPSVINSNFNYKIINKQIYMPLTCIKSIGYE 773

Query: 849  TARHI--MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
              + I   ++  +  +  + +F   V  +K+N  VL++L+ AGALD F Y++  ++++LD
Sbjct: 774  VVKKINLAKSENENMYLDIHNFILAVIKQKINVNVLQTLIKAGALDIFNYNKKTMIENLD 833

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             +   A   ++                  +KI L  +      +    E+ + GF+   +
Sbjct: 834  LLISQANAYKQVNNI-----------LDDEKINLIIYDEYEDEILASFEKELYGFFIDQN 882

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P+   K            +           +   ++  ++ K +  +++ +VT  +   E
Sbjct: 883  PILKLK---TNNFNLNLIDISKLEYNKVQVILGYILKIKEIKDKNNNKMAFVTVFDNTSE 939

Query: 1027 YEANFF 1032
             E   F
Sbjct: 940  LELTIF 945


>gi|148254432|ref|YP_001239017.1| error-prone DNA polymerase [Bradyrhizobium sp. BTAi1]
 gi|146406605|gb|ABQ35111.1| error-prone DNA polymerase, DnaE-like protein [Bradyrhizobium sp.
           BTAi1]
          Length = 1196

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 226/908 (24%), Positives = 381/908 (41%), Gaps = 79/908 (8%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC- 63
           +   P +  + V +++S L G     + + + A     AI I D N L   +    +   
Sbjct: 1   MTPIP-YAEIGVTTNFSFLHGGSHPQDYVHQAAEYGLTAIGIADHNTLAGIVRAYSELSN 59

Query: 64  ---AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
              +   + I G +L                     P I++       Y RL +L++R  
Sbjct: 60  DRLSYKPKLIYGARLVFSCG---------------TPDILVYPRDRAAYGRLCQLLTRGK 104

Query: 121 ----LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
               L    K   R+  + L +     L++L                       L   K 
Sbjct: 105 RGSDLDRVAKGDCRLSFADLFDFIAGQLLVLMPPH---------RFDEDALGNILARLKD 155

Query: 177 LFGDRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
              D +++     +RG DR R +++ +LA + ++PL+ATN+ L+   +     DVL  + 
Sbjct: 156 SRADGVWLAASLLYRGDDRRRLARLARLAASSKVPLIATNDVLYHHPQQRMLQDVLTCIR 215

Query: 236 HS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
              T+ S   R +   + +LK   EM  +F D P+A+  T+    R  F L       P 
Sbjct: 216 EKATIESIGRRLQANAERHLKPGHEMARLFRDYPDAITETIRFTDRIVFSLDQLKYQYPD 275

Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                     K  +  L +   AG +                 R  L+ EL +IA + ++
Sbjct: 276 EPVPPG----KTAQGHLEDLTWAGAKTYFGDDLD------DRLRAVLNKELALIAELNYA 325

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            YFL V D +++A+   I    GRGS A S   Y L IT +DP +  LLFERF++ +R+ 
Sbjct: 326 HYFLTVHDIVRYARSQGIL-CQGRGSAANSAVCYVLGITSVDPTKIDLLFERFISKERLE 384

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            PD D+DF   RR+EV++YV  +YG  R A I T    + ++A+RDVG+AL +       
Sbjct: 385 PPDIDVDFEHSRREEVMQYVYRRYGRHRAAIIATVIHYRPRSAIRDVGKALGLTEDVTAV 444

Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           L   +       +S   +    R      A+P + R +E++ +L    RH S H  G V+
Sbjct: 445 LADTVWGSWGDGLSDIQV----RQAGLDPANPMIRRAVELAAELINFPRHLSQHVGGYVL 500

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
               L   VP+      D    +++   ++   ++K D L L  LT ++K  D +A    
Sbjct: 501 TQDRLDSYVPIGNAAMDDRTFIEWDKDDVDALSMMKVDVLALGMLTCIRKCFDLIADHKG 560

Query: 595 KVDL--SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
           +  +   +   DD+E Y +L    +LG+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 561 RRYVLADIKSEDDNEVYQMLQRGESLGVFQVESRAQMNMLPRLKPRTFYDLVIEVAIVRP 620

Query: 653 GPIDNIVVYN--NRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLL 702
           GPI   +V+    R+N  EK+    P         +  +L +T GV ++QEQ M+IA   
Sbjct: 621 GPIQGDMVHPYLRRRNRLEKVTYPSPSPDHGPADELYKVLHKTLGVPLFQEQAMRIAIEA 680

Query: 703 SGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
           + +S  EA+ LRRAM        +   +E+ +S     G     A + F+ +  F  YGF
Sbjct: 681 AKFSPEEANGLRRAMATFRNVGTIGSYEEKMVSSMIARGYDPAFAKSCFDQIKGFGSYGF 740

Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            +SHAA++A + Y ++W+K  +P  F  A +  +        +   DAR+  ++I    V
Sbjct: 741 PESHAASFAQLVYVSSWLKCFHPDAFCCALLNSQPMGFYAPAQIVGDARKNGVEIRNIDV 800

Query: 822 NTPCVDFKVGDN-----RIYYSLAAIKGVG--TTTARHIMEASADKPFDSLEDFCSRVDS 874
           +    D  + +       +      I G          I           L +   +  +
Sbjct: 801 SHSFADNTLEETDGKYCAVRLGFRQIDGFRWIDRDEERI---RK------LSEVVRKAQA 851

Query: 875 KKLNRRVL 882
             ++ R L
Sbjct: 852 AAVSPRSL 859



 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 61/181 (33%), Gaps = 15/181 (8%)

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            I++A A  PF SLEDF        L +R L  L  A A    G  R   L ++  +    
Sbjct: 933  IVKARARGPFTSLEDFAR---DTALPKRALLLLADADAFRSLGLDRRAALWAVRRLPDDV 989

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
                         +F             +         +   + + +     GHP++  +
Sbjct: 990  ----------PLPLFEAAIAREQPDEGAKPLPEMPLPEQVVADYQTIRLSLKGHPMEFLR 1039

Query: 973  PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                  G+    +        +IR A +V+ +Q+  + KG  + ++T  +         +
Sbjct: 1040 RRFTAEGVLACRDVNDANDRRHIRCAGVVLVRQRPGSAKG--VVFMTLEDETGIANIVVW 1097

Query: 1033 P 1033
            P
Sbjct: 1098 P 1098


>gi|86158037|ref|YP_464822.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans
            2CP-C]
 gi|123497627|sp|Q2IIA8|DNAE2_ANADE RecName: Full=Error-prone DNA polymerase
 gi|85774548|gb|ABC81385.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans
            2CP-C]
          Length = 1132

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 211/748 (28%), Positives = 349/748 (46%), Gaps = 54/748 (7%)

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            LR     G   R        G   +D  ++L  EL+++  + ++ YFL V D +++A+  
Sbjct: 361  LRELVREGARWRYG------GEPPEDVARQLARELDLVESLGYASYFLTVWDVVRFARSR 414

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I    GRGS A S   Y L IT IDP+R  LLFERF++ +R   PD D+DF  +RR+EV
Sbjct: 415  GIL-CQGRGSAANSAVCYVLGITSIDPVRMGLLFERFISAERGEPPDIDVDFEHERREEV 473

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            ++YV  +YG +R   +    + + K+ALRDVG+AL +   QVDRL KL+ +         
Sbjct: 474  LQYVYQRYGRDRAGMVCEVITYRGKSALRDVGKALGLSLGQVDRLAKLVGSYEDLGQVGP 533

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
             +   +    A      V   L ++++L+G  RH S H  G VI  RPL + VP+     
Sbjct: 534  ELLAQAGLDAADS--ERVRMTLALARELQGFPRHLSIHVGGFVITRRPLCETVPIEPAAM 591

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR----------GVKVDLSL 600
                + Q++   + +  L+K D LGL  LT L ++L  LA+                L+ 
Sbjct: 592  PGRTIVQWDKDDLAELDLLKVDLLGLGMLTALSRALALLARHRPAPASPTPVPHPDALAT 651

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NI 658
            IP +D E Y +L    ++G+FQ+ES         ++P    D++  V++ RPGPI    I
Sbjct: 652  IPAEDPEVYEMLGRADSIGVFQVESRAQMSLAPRLRPRNFYDLVISVAIIRPGPIQGGMI 711

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y  R++GKE++   +  ++P+L  T GV ++QEQ M++A + +G++  EAD LRR M 
Sbjct: 712  HPYLRRRDGKEQVRYPYAPLEPVLARTLGVPLFQEQAMRLAVIAAGFTPGEADELRRVMT 771

Query: 719  -KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             ++  E++   K R ++G ++ GIS   A  IF+ L  FA YGF +SHAA++A++ Y +A
Sbjct: 772  HRRSHEKLAAMKARLVAGMAERGISGADAEEIFKQLLGFAGYGFPESHAASFALLVYASA 831

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR--- 834
            W+K ++P  F  A +  +           +DA++  +++    V     +  +       
Sbjct: 832  WLKRYHPAAFACALLNSQPMGFYAPHTLVEDAKRHGVEVRGVDVGCSGWESSLEGAAPGR 891

Query: 835  ---------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                     +   L AI+G+       I+EA A  PF S+ +   R    +L+R  L  L
Sbjct: 892  PAAPGEAAVLRVGLHAIRGLPRAVGEAILEARAAGPFGSVAELVRRA---RLSRAWLVRL 948

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              AGAL      R   +                      ++FA       +         
Sbjct: 949  AEAGALGTLAPDRRGAVW-----------RSLAVEADGGDLFAGLAPPEPEA----ALPE 993

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             +++     +    G    GHP+ + +P L    I+   E         + +A +V+ +Q
Sbjct: 994  ASAADEVSADFTTTGLSVRGHPMALVRPGLGGDRIRTARELGRLPDRAPVEVAGLVIVRQ 1053

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            + +T +G  I +V+  +          P
Sbjct: 1054 RPETARG--IVFVSLEDETGIANLVVMP 1079



 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 107/299 (35%), Gaps = 37/299 (12%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +  +P +  L+  S +S LEGA     ++ + A      +A+ D N L+  +    +A  
Sbjct: 1   MSHAPRYAELRCKSCFSFLEGASHPEELVGRAAELGLSGLALADVNGLYGIVRAHAEAKR 60

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+  I+G +L +                     +VLL    EGY  L  LV+R +  + 
Sbjct: 61  QGLPLIVGAELVVA-----------GLAPGRPARLVLLAQDREGYAGLCRLVTRAHCGEG 109

Query: 125 GKQSVR--------ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
              +          +    +      GL  L  G+ G                 +   K 
Sbjct: 110 WTGAPPRRERDAVAVPFEAVAAGAR-GLFALYPGADGD---------------AVARLKD 153

Query: 177 LFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG R  + + RHR   +  R            +P+  TN+    +       DVL  V 
Sbjct: 154 AFGRRAALAVARHRVAGEEARVLAARSAGRRLGVPVAVTNDVHTHARARQVLQDVLTCVR 213

Query: 236 HSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
           H T V +  R      +  LK   E+  ++SD PE L    +IA +C F ++      P
Sbjct: 214 HGTTVDRAGRRLFPNAERTLKGPEELARLWSDFPEGLAAAADIADQCRFRMEEIRGEHP 272


>gi|330981299|gb|EGH79402.1| error-prone DNA polymerase [Pseudomonas syringae pv. aptata str. DSM
            50252]
          Length = 702

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 188/672 (27%), Positives = 314/672 (46%), Gaps = 39/672 (5%)

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            +  GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  DRR+EVI+Y
Sbjct: 2    LCQGRGSAANSAVCYALGITELNPEQSNLLFERFISRERNEPPDIDVDFEHDRREEVIQY 61

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            +  +YG  R A      +     A+RDV + L +P  Q++ L +          S + + 
Sbjct: 62   IFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPPDQINALAEAFSRWSDSLPSPERLR 121

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
            +           P + R+L ++ +L G  RH S H  G VI + PL  LVP+     +D 
Sbjct: 122  EY----GFDADTPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETLVPVENAAMADR 177

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLL 612
             + Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +P DD +TY ++
Sbjct: 178  TIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGQRWTLASLPGDDRKTYEMI 237

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEK 670
            +   T+G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V+    R+NG+E 
Sbjct: 238  SRADTVGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLRRRNGEEA 297

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM-DKQK 729
            +    P ++ + K T GV ++QEQVM++A L + Y+  EAD LRRAM    +    +  +
Sbjct: 298  VTYP-PKLESVFKRTLGVPLFQEQVMEVAILAADYTPGEADELRRAMAAWKRHGGLEPHR 356

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
            ER  +G  KNG     A  IFE +  F  YGF +SHAA++A+++Y + W+K H P  F  
Sbjct: 357  ERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEPAAFTC 416

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLA 840
            A +           +  QDAR+ +I+I P  V     D  +          +  I   L 
Sbjct: 417  ALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDRTRNLAIRLGLR 476

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             ++      A  I  A A +PF    D   R +   L+ R  E+L  +GAL      R +
Sbjct: 477  MVRSFREDDALRIEAARAKRPFVDATDLTLRAE---LDSRAAEALADSGALRGLIGHRHR 533

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
                +  +                 +F       +  I      +   +     +   LG
Sbjct: 534  ARWEVAGV------------EAQRPLFDDLPSEETQVI----LPLPTVAEDLVADYTTLG 577

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
                 HPL + +  L     +  ++ ++      + +  +V+ +Q+  T  G  + +VT 
Sbjct: 578  TTLGPHPLALLRRQLAAKRFRSSQDLLSLENDRTLSVVGLVIGRQRPGTASG--VTFVTL 635

Query: 1021 SEPAKEYEANFF 1032
             +         +
Sbjct: 636  EDEFGMVNVVVW 647


>gi|260579156|ref|ZP_05847047.1| error-prone DNA polymerase [Corynebacterium jeikeium ATCC 43734]
 gi|258602702|gb|EEW15988.1| error-prone DNA polymerase [Corynebacterium jeikeium ATCC 43734]
          Length = 867

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 238/897 (26%), Positives = 381/897 (42%), Gaps = 102/897 (11%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA--AGIQ 68
           F  L   S+Y+ L GA     +++        A+A  D +  + A  F+       A + 
Sbjct: 33  FAELHACSAYNFLRGASQPEQMVEAARELGLSALACVDRDGFYGAARFATAVAESNADLA 92

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            + G +L +DM                   + +L    EGY RL  ++S   + D  K S
Sbjct: 93  TVFGAELSLDMP------------------LTVLCKGREGYTRLSRVISDARMADPDKDS 134

Query: 129 VRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
           VR   L  L E      ++L                 + A+        LFG D + V L
Sbjct: 135 VRYPSLPQLAEAAGGHWLVLL--------------DWRWADA---QLVDLFGADNVVVEL 177

Query: 187 QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
           Q      D  R  ++  LA  H L  + ++     + +         A+     ++  + 
Sbjct: 178 QHTMNPADADRNERLHALAVRHGLREIVSSAPTCATPKYSRLAGAKAALRERKDMAAAEP 237

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                        E +   +   E L   VE + + +        ++   +         
Sbjct: 238 TTHPVGGSWLRSGEEMLQLAGDCEWLARAVETSVQVAEECAFTLDLVAPNLPHFPVPEGY 297

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
            E   LR     G   R  Q   +   +       +D EL  I ++ F GYFLIV D + 
Sbjct: 298 TEMTWLRAITERGGAQRYGQRGSSAAAN--QAWATIDRELETIEQLGFPGYFLIVHDIVS 355

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +  +NNI    GRGS A S   +AL IT +D +   LLFERFL+P+R   PD D+D    
Sbjct: 356 FCHENNI-FCQGRGSAANSAVCFALGITTVDAVASGLLFERFLSPERDGPPDIDLDIESG 414

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+E I+YV ++YG E  AQ+    + + + A RD GRAL     Q+D   +     P  
Sbjct: 415 RREEAIQYVYSRYGRENAAQVANVITYRRRGATRDAGRALGYAPGQIDAWTRNPEQTP-- 472

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                                  D +  +++++    RH   H+ G+VI DRP++Q+VP 
Sbjct: 473 -----------------------DAVQRLAEQMLDHPRHLGIHSGGMVICDRPIAQVVPT 509

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFD 604
                    V Q++       GL+KFD LGL  L  L  ++D +   RG +V+L  +   
Sbjct: 510 EWARMEGRSVVQWDKDDCAAVGLVKFDLLGLGMLEALHHAVDQVRAHRGREVELWRLDPT 569

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYN 662
           + E Y +L+    +G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y 
Sbjct: 570 EPEVYAMLSRADAVGVFQVESRAQMSTLPRLKPRTFYDLVVEVALIRPGPIQGGSVHPYI 629

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            R+NG E +   HP ++P L +T G+ ++QEQ+MQ+A   +G+S +EAD LRRAMG K  
Sbjct: 630 RRRNGLEPVTFDHPCLEPALTKTLGIPLFQEQLMQMAVDAAGFSGAEADTLRRAMGSKRS 689

Query: 723 EEMDKQKERFISGA--SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            +  ++ ++       +KNGI   +A  +++ +  FA YGF +SH+ ++A + Y +AW K
Sbjct: 690 PQKMERLKKRFYQGLEAKNGIRGAVADRLWDKIVAFASYGFPESHSQSFASLVYYSAWFK 749

Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV-------------NTPCVD 827
            HYP EF  A +  +       +    DAR+  ++++P  V              TP   
Sbjct: 750 YHYPAEFCVALLRAQPMGFYSPQSLLADARRHGVEVLPVDVNASDVQVDAVVSLMTPPRT 809

Query: 828 FKVGD------------NRIYYSL---AAIKGVGTTTARHIMEASAD-KPFDSLEDF 868
            +                +I   L     +KG+    A  I+EA      F S+ED 
Sbjct: 810 NRPTGVHGLGRGTGEPVGQIRLGLSGAGGVKGISAEVAERIVEARERIGRFTSVEDL 866


>gi|300779106|ref|ZP_07088964.1| DNA polymerase III subunit alpha [Chryseobacterium gleum ATCC 35910]
 gi|300504616|gb|EFK35756.1| DNA polymerase III subunit alpha [Chryseobacterium gleum ATCC 35910]
          Length = 1016

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 232/1029 (22%), Positives = 432/1029 (41%), Gaps = 108/1029 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  HS +SL  G +S+ +++ +        +A+TD N +    +F +      I+PI+G 
Sbjct: 3    LNCHSYHSLRYGTISIQDLVQQAVHFNIKTLALTDINTITGIYDFYKLCQEYNIKPIVGV 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++ +  +                   + L    +    +  L++                
Sbjct: 63   EIRVQDELYY----------------ICLAKNQKSIAEVNRLLTA--------------- 91

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
                    EG+          I +A    +       L    +   D  ++ + R    +
Sbjct: 92   -----YNCEGI---------EIPKANPDFTDTFVIYPLENIPEQLADHEFIGI-RKDQLN 136

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
               + ++    +     +V  +   F + E+YE H +L A+  +T++S+        D+ 
Sbjct: 137  LLIQPELKPFIHK----MVILHPVTFTTPEEYELHKILRAIDLNTLISKLTEAHYCKDNE 192

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            +    + +             +E  +                 +K   D ++ +   L+ 
Sbjct: 193  MFTDKKKLLAQFQHE---PQIIENTKYIVNTCHFDFDFSTPKNKKHFTDSRENDFELLKK 249

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
             A  GL  R ++  +         ++R+D EL VI ++ F  YFLI  D IQ++ +    
Sbjct: 250  LAYEGLSKRYSEDNL-------QAKERVDKELAVIDQLNFCAYFLITWDIIQYSNRMGFM 302

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
               GRGSGA S+ +Y + ITDI PL   L FERFLN +R + PDFDID+    RD ++ Y
Sbjct: 303  -HIGRGSGANSMVSYCIGITDICPLELDLYFERFLNLNRKTPPDFDIDWSWQTRDIILEY 361

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            +  KYG + VA   T    + ++  R+VG+   +P  ++D L      +           
Sbjct: 362  IFGKYGKDHVAFCGTNVEFKYRSIFREVGKVFGLPKEELDMLVTKPIQE----------- 410

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                      ++    ++    + LE      S H+ GI+I + P++    +        
Sbjct: 411  --------HDSNSVSRQVHYYGKLLEKFPNQRSMHSCGILISEEPITNYSALEMPP-KGF 461

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDH--ETYH 610
            P+ QF+M   E+ GL KFD L  + L  +  ++  +  +RG+ +D+          +   
Sbjct: 462  PIVQFDMYTAEEIGLEKFDILSQRGLGTINDTVKLVKEKRGIDIDIRDTSLSKDEAQCNE 521

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGK 668
             L++  T+G F +ES  MR  L  ++ D  + ++A  S+ RPG   + ++  Y  R N  
Sbjct: 522  FLSSGKTIGCFYIESPAMRGLLRRLKCDNYKVLVAASSIIRPGVAQSGMMREYIFRHNNP 581

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             K    H + +  L ET G+++YQE V++IA    G S  + DVLRRAM  K +     Q
Sbjct: 582  SKFEYFHEVFEKELGETYGIMVYQEDVIKIALHFGGLSAPDGDVLRRAMSGKGRSLSALQ 641

Query: 729  KER--FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +  F     + G  + +++ ++  +  FA Y F K+H+A+YAV SYQ+ ++K ++P+E
Sbjct: 642  KVKDNFFKSCKRLGHPEKLSMEVYRQIESFAGYSFCKAHSASYAVESYQSLYLKVYFPIE 701

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+ +++        + + +  +AR     I  P VN       V  + +Y  L  I+ + 
Sbjct: 702  FMVSAIN-NGGGFYRTEVYIHEARMSGAAIHNPCVNLSEYQTTVYGSDVYLGLMHIERLE 760

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
               A+ I E    +  + SLE+F  R+    +    L+ L+F GA    G  + +LL   
Sbjct: 761  LKLAQLISEERNQNGEYTSLENFVKRIP---IGIETLQILIFIGAFRFTGKQKHELLIES 817

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
              +    +   +     H  +    +  +     L      N      +E  +LGF  S 
Sbjct: 818  RFLLGTHKVPFR-----HLTLLDEPQKDY----QLPSI-ERNRFEDAFDEIEILGFPVSF 867

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
             P D+ +   R  G    ++ +       +++ A ++S++   T+KG+ + + T+ +   
Sbjct: 868  SPFDLLQT--RYRGSVLVKDLL-KFHKCQVKMLAYLISRKHVPTKKGT-MYFGTWIDAEG 923

Query: 1026 E-YEANFFP 1033
            E ++   FP
Sbjct: 924  EYFDTAHFP 932


>gi|206600063|ref|YP_002242137.1| gp80 [Mycobacterium phage Konstantine]
 gi|206287151|gb|ACI12496.1| gp80 [Mycobacterium phage Konstantine]
          Length = 1098

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 219/979 (22%), Positives = 385/979 (39%), Gaps = 103/979 (10%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV    HS++S  +G  S+   + ++++    A+A+++  N+ S ++  ++   AGI+PI
Sbjct: 3   FVSFHTHSTFSYGDGFGSVEAHVQRVSSLGMSALALSEHGNVSSHVQLERECKKAGIKPI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +         K              + +     EGY  L +LV++ Y+         
Sbjct: 63  FGIEAYFAPVSEAKR-------GQLKTHLTIFAMDEEGYHNLNKLVTKSYIDS--YYKPT 113

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN---------------SSQVAEKRLLTFK 175
           +    L +    GL +L+G +   +                            + +  F 
Sbjct: 114 VSWENLVK-HNAGLAVLSGCADSLLSCTLLGGKFLGPRRDHRNEKSRRPMAGRRLVQRFA 172

Query: 176 KLFGDRLYVNLQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +FGDR ++  QR  G  R      ++  ++    +PL+AT +  +           L A
Sbjct: 173 DVFGDRFFLETQRFPGLGRTCAVNEELAAISRDTGIPLIATADVHYPYPHQNVMQTALHA 232

Query: 234 VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL- 292
                  + +D      D  L        I  DL     +  E         Q+      
Sbjct: 233 AHRGGTAATQDAD-WEYDILLTYPESDKEIIDDLVATGISETEARSAVRATAQLAQRCTV 291

Query: 293 --PRFIEKECDDIQKEEEN-----------ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
             P+        +     +            + +K   G + R  Q        A++Y  
Sbjct: 292 ELPKAKPLRFPGVDLTAVHTESGRIAVTRKFMWDKLREGWKYRCKQ-RPELKTRAKEYND 350

Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
           RL +E+  I    F  YFLI +D + + K     VGP RGS AGS+  Y L IT+IDPL 
Sbjct: 351 RLKYEMETIVSKDFMDYFLINSDLVSYTKDQGKGVGPARGSAAGSLVCYLLRITEIDPLY 410

Query: 400 ---FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
                ++FERF++  R  MPD D+DF  + R  +++   + YG E VA +      +  +
Sbjct: 411 PVFDKMIFERFIDKTREDMPDIDLDFDPEARPVIVKRAISLYGPENVANVGNHQGYRGVS 470

Query: 457 ALRDVGRALQMPYSQV----DRLCKLIPNDPAHPVSL----QAIADDSRFREARLADPSV 508
           AL  + +A  +P S      DR+      D     ++    ++  ++    +        
Sbjct: 471 ALNAMAKAHALPRSVFKPIKDRIQDRTETDDRRDDTILDVLESYGENPEVAKVIEQHYWW 530

Query: 509 DR-------LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS------DLPV 555
            +        L+++  LEG       HAAG VI   P+ +   +Y            + V
Sbjct: 531 TKDRKQVPGPLQLATWLEGDCSGLGVHAAGFVISSEPIPETCAIYSRESGSGRNRKQVTV 590

Query: 556 TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL-------SLIPFDDHET 608
             ++ +  E   L+K DFLGL T+ +++++ + +      +              +    
Sbjct: 591 IPYDKRDAEYLNLLKNDFLGLLTVGVIRRAAEMVGMTMEDMYTLLPPEGDLRDNRESRPI 650

Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKN 666
                    +GIFQ E    R  L  ++P     +  + +L RPGP        Y   K 
Sbjct: 651 IERFMNDDLVGIFQFEGGTTRSVLRDVKPTEFRHLADINALSRPGPKYGGQTDRYIAVKM 710

Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IKEEM 725
           G E++  IHPL D  +  T G I+YQEQ+M I + L+G+ + +   +R+ +GKK  + + 
Sbjct: 711 GDEELEKIHPLFDQHVDWTYGQIVYQEQIMFILRDLAGFPIEKVLKVRKIIGKKLGEHQF 770

Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
               E F +G + NG+ + +A+ ++  +   A Y FN SH+ +Y+ I++Q+ W+K H+P 
Sbjct: 771 AALWEDFKNGCAANGVGEDVALRVWAGITSAAGYAFNTSHSYSYSWIAWQSMWLKHHHPA 830

Query: 786 EFLAASMTLEMDNVE---KIKKFCQDARQFNIQI--MPPSVNTPCVDFKVGDNRIYYSLA 840
            F AAS+    D  +   +     +D ++    I  +P   N    ++ V    I     
Sbjct: 831 AFFAASLEFNGDGKDDKPRRTALIKDTKEHGRDIAVLPLDPNASKTNWSVESGAIRPGFV 890

Query: 841 AIKGVGTTTARHIMEAS------ADKPFD--SLEDFCSRVDSKKLNRRVLESLV----FA 888
            I  +G  TA  IM          DK +   + ED  +    K + +  +E +      A
Sbjct: 891 QIPKIGEATAADIMAWRDDLNQQHDKAYRLLTWEDLIA---VKGIGKATVEKMREFAEKA 947

Query: 889 GAL------DCFGYSRMQL 901
                    D  G  R Q+
Sbjct: 948 DPFEVNRVQDQLGAFRKQM 966


>gi|42561210|ref|NP_975661.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides
            SC str. PG1]
 gi|42492708|emb|CAE77303.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides
            SC str. PG1]
 gi|301320544|gb|ADK69187.1| putative DNA polymerase III DnaE [Mycoplasma mycoides subsp. mycoides
            SC str. Gladysdale]
          Length = 987

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 275/1017 (27%), Positives = 472/1017 (46%), Gaps = 85/1017 (8%)

Query: 19   SYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDID 78
             Y  LE  ++++  ++ I  ++      ++T+ ++   EF +KA    I+PIIG  ++ +
Sbjct: 12   QYDFLESLITIDQYIEFIKKNKLSYAFYSETHTMYGVAEFFKKATDNNIKPIIGLTIEFE 71

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
                                +++     +GYQ ++  VS  +L D           ++ E
Sbjct: 72   DS----------------TKLIIYAKNKKGYQ-ILNFVS-SFLNDGFNHYDYEIKEYILE 113

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRES 198
            +    ++++     G I    F                   D  Y               
Sbjct: 114  LVNNNVVVI-----GLISDLDFKTH----------LIDKLNDDFY--------------- 143

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
                      L     N   +L   D + +++L A+  +  +   D+ + T +++  +  
Sbjct: 144  ----DVKELNL---YFNQISYLDINDQKTYNILNAIKTNKTI---DQIQNTNNYFYPDND 193

Query: 259  EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
             ++  +S             +    +   +     + + K  +         LR   +  
Sbjct: 194  YLIKNYSLENIKKVINEINFKVDFNLFDSNK----KHLVKYKNINNLSSFEYLRQVCLLS 249

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
            L+    Q  I      + Y  RL++EL VI +M FS YFLIV+D++ +AKKN+I VGPGR
Sbjct: 250  LKK--YQQKIKPNLDLKLYISRLNYELEVIKQMGFSDYFLIVSDYVNFAKKNDILVGPGR 307

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GS AGS+ +Y L ITDIDPL + LLFERFLNPDR ++PD D+DF  +RR+EV+ Y+  KY
Sbjct: 308  GSAAGSLISYLLRITDIDPLEYDLLFERFLNPDRSNLPDIDLDFQDNRREEVLEYLFEKY 367

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G   V  I T+ ++  K A RDV R   +    V+++ K++               +++ 
Sbjct: 368  GKYHVGMITTYQTIGYKMAWRDVCRVFNIDLLIVNKISKVLDQYTNSDFLEFI--KENKL 425

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
                  +     +     K+ GL R  STHAAGIV+ D  L +LVP+ +   + +  TQF
Sbjct: 426  LNDYFQNNVFKEIFITMHKIVGLPRQTSTHAAGIVLTDCDLRELVPI-KIGFNGINQTQF 484

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGT 617
            +M +++  GLIK D LGL+ LT +Q+        + +K+ L+ I  +D + + LL  K T
Sbjct: 485  DMNYLDDLGLIKMDILGLRNLTTIQEIKHLIYLNQNLKISLNKIDLNDKKAFELLKNKQT 544

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
             GIFQLES GM   +  MQ D IE I    +LYRPGP + I +Y   K    K   I   
Sbjct: 545  SGIFQLESKGMTDLISKMQVDSIELISIASALYRPGPQEMISIYLENKKTN-KFKIIDQS 603

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            +  +LK T G+IIYQEQVMQ+   +  +S ++AD++RRAM KK  + M   K  FI+ A 
Sbjct: 604  VFEILKPTYGIIIYQEQVMQMLNKVVNFSYAKADIIRRAMSKKNNKVMQSMKLEFINSAV 663

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KN  S   A  I+  + KF++YGFNKSH+ +Y+ ISY  A+ K H+  EF  + +   + 
Sbjct: 664  KNNFSYNKANLIWNWIEKFSNYGFNKSHSISYSYISYWLAYFKAHFTTEFYTSLLDQNIG 723

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI--ME 855
            N  K +++ ++   + I++  PSV     ++++ + +IY  L  IK +G    + I   +
Sbjct: 724  NEIKTQQYIKELYDYKIKVNKPSVINANFNYQIINKQIYMPLTCIKSIGYEVVKKINLAK 783

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
            +  +  +  + +F   +  +K++  VL++L+ AGALD F Y++  ++++LD +   A   
Sbjct: 784  SENENMYLDIHNFILAMIKQKISVNVLQTLIKAGALDIFNYNKKTMIENLDLLISQANAY 843

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            ++                  +KI L  +      +    E+ + GF+   +P+   K   
Sbjct: 844  KQVNNI-----------LDDEKINLIIYDEYEDEILASFEKELYGFFIEQNPILKLK--- 889

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +           +   ++  ++ K +  +++ +VT  +   E E   F
Sbjct: 890  TSNFDLNLIDISKLEYNKVQVILGYILKIKEIKDKNNNKMAFVTIFDNTSELELTIF 946


>gi|261221299|ref|ZP_05935580.1| error-prone DNA polymerase [Brucella ceti B1/94]
 gi|265997260|ref|ZP_06109817.1| error-prone DNA polymerase [Brucella ceti M490/95/1]
 gi|260919883|gb|EEX86536.1| error-prone DNA polymerase [Brucella ceti B1/94]
 gi|262551728|gb|EEZ07718.1| error-prone DNA polymerase [Brucella ceti M490/95/1]
          Length = 836

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 219/838 (26%), Positives = 368/838 (43%), Gaps = 62/838 (7%)

Query: 16  VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPII 71
             S++S L GA     ++++  A     I I D N L   +    +       +G +  I
Sbjct: 9   AASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQWKDIRKESGFRLFI 68

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           GC+L                     P +V+       Y +L  L++        K    +
Sbjct: 69  GCRLSFIDG---------------TPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGECHL 113

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHR 190
             + L     +  I +        D A           RL    +     +++ L   H+
Sbjct: 114 EWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTMPHQ 163

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VT 249
           G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R     
Sbjct: 164 GQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLEKN 223

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            + +LK   EMV +F D PEA+  T +     +F L       P           K  + 
Sbjct: 224 AERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KTAQQ 279

Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            L +    G         I         +  ++ EL +IAR+++  YFL V D +  A++
Sbjct: 280 HLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTHARE 334

Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
             I    GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +RR+E
Sbjct: 335 KGIL-CQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHERREE 393

Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
           V++YV ++Y  +R A + T  + ++++A+RDVG+AL +       L   +       +  
Sbjct: 394 VMQYVYDRYSRDRAAIVATVINYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGGIDR 453

Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
           Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+    
Sbjct: 454 QHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIGPAA 509

Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD------LSLIPF 603
                  +++   I++ GL+K D L L  LT ++K+ D + Q   ++       L+ +P 
Sbjct: 510 MDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLASLPR 569

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
           +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+  
Sbjct: 570 EDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMVHPY 629

Query: 664 RKNGKEKIVSIHP----------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            +    +     P           +  +L +T+GV ++QEQ M+IA   + ++  EA+ L
Sbjct: 630 LRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEANQL 689

Query: 714 RRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           RRAM    K   +   +++ I G    G  +T A N F  +  F +YGF +SHAA++A +
Sbjct: 690 RRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASFAHL 749

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            Y +AW+K H+P  F AA +  +        +  +DAR+  + ++P  VN    +  +
Sbjct: 750 VYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREHGVTVLPVDVNFSQWNGTI 807


>gi|312601529|gb|ADQ90784.1| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae 168]
          Length = 981

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 283/966 (29%), Positives = 460/966 (47%), Gaps = 100/966 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L   + Y+ L   + L++++     +    + ITD N++F   +F +      I P+IG 
Sbjct: 6   LHTRTEYTFLSSTIKLDSLIKFALENNLKTLVITDLNSMFGVPKFYKLCKQNKINPVIGL 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           +++I+                   + +LL     GY  L E  S+        +   + L
Sbjct: 66  EIEIEN-----------------FNFILLAKNYSGYVILSEFSSK------KTKKKDLFL 102

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD----RLYVNLQRH 189
           + L E   + +I++     G   +                  KLFG+      Y+     
Sbjct: 103 TDLAE--KDDIIIIDHPKKGFYAQKK------------EQLSKLFGEKQLKNYYI----- 143

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              +  +    V L   +   L+     ++L           ++    T          +
Sbjct: 144 -VENNPKIENAVYLQERN---LLFAEEKIYLEA---------LSKIKGTT-------LDS 183

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              +         I   + +     VE  +     +  +          + D     E +
Sbjct: 184 STKFFDFNKWEQEIDPIIIKRTNYLVENIQIQFPKIDFN--------LPDLDHKNGLESD 235

Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            L  K +       A            ++ RL +E   I ++KF+ YFLI+ DF++WA+K
Sbjct: 236 LLLKKILK-----EAVQNRRIELSNYKWKARLQYEYETICKLKFTNYFLIIWDFLKWARK 290

Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
           N I +GPGRGS +GS+ AY L IT ++PL++ L+FERFLNP R++MPD DID    RR E
Sbjct: 291 NEILIGPGRGSASGSLVAYLLEITSVNPLKYDLIFERFLNPQRITMPDIDIDIQDTRRQE 350

Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
           VI Y+  KYG +  A IITF +L AK+  RD+ +   +P  Q+++  KLIPN+    +S 
Sbjct: 351 VIDYLFEKYGPDHCATIITFSTLAAKSVFRDISKTFGIPEIQINKNAKLIPNNAN--LSQ 408

Query: 490 QAIADDSRFREARL---------ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                 S FR                   ++ +IS  LEG+ R +STHAAGIV+   P++
Sbjct: 409 LYDQKSSEFRRLIEKGDNFKAENNSEIYKKIYKISAFLEGMPRQSSTHAAGIVLSKIPIT 468

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
           +LVP++   + +L   Q+  ++IE   L+K D LGLK LT++   L  +   G K+  + 
Sbjct: 469 KLVPVHN-SKENLNQIQYAAEFIEDFSLLKIDLLGLKNLTIVANILAKINSDGHKITFNQ 527

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
           +P  +  T +LL+   T GIFQLES GM  +++ +    I DIIA++SL+RPGPI  I  
Sbjct: 528 LPISEDSTNNLLSQGKTSGIFQLESPGMTASIKKIGVSSINDIIAIISLFRPGPIQQIPT 587

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
           Y   K  +     I P  D +++ T GVIIYQEQ+MQI Q+++G++L +AD++R A+ KK
Sbjct: 588 YAKNK-ERNNWEKIFPEYDKIVESTFGVIIYQEQIMQICQVVAGFNLEQADIIRVAISKK 646

Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            + ++DK KE FI   +  G    +  +I+ L+ KF+DYGFNK+HA AYA ++Y+ A++K
Sbjct: 647 DETKLDKIKENFIKNGTNLGYEPKLVEHIYNLIYKFSDYGFNKAHAVAYATLAYKMAYLK 706

Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--FKVGDNRIYYS 838
             YP  F    ++ E     KIKK+  +AR F  +I  P++N    +  F  G N I+  
Sbjct: 707 AKYPAYFFVELISNENGAQAKIKKYVGEARNFGFKIHRPNINFSTENAVFDKGKNTIFLP 766

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           L  +KG+GT   + I++    +  + +  DF  R+     ++  +E L+FA  L  FG +
Sbjct: 767 LLMVKGLGTIAIKTIIDERSKNGIYKNFLDFIKRMKLVNFSKVAIEKLIFANTLSDFG-N 825

Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
           +  L  + + +  +A +V  ++     N+         D   LEK    N    +ENE +
Sbjct: 826 QETLAHNFELLWNHASFVLNDKDG---NLVLTTDNFGLDLEFLEKIP-YNQEKNYENEVK 881

Query: 958 VLGFYF 963
            LG  F
Sbjct: 882 YLGMSF 887


>gi|86143845|ref|ZP_01062213.1| DNA polymerase III alpha subunit [Leeuwenhoekiella blandensis MED217]
 gi|85829552|gb|EAQ48015.1| DNA polymerase III alpha subunit [Leeuwenhoekiella blandensis MED217]
          Length = 1002

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 247/1033 (23%), Positives = 438/1033 (42%), Gaps = 107/1033 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  HS++SL  G LS   +L          IA+TD NN  + L F +KA    I+P++G 
Sbjct: 3    LNCHSTFSLRYGTLSEEELLALAEHYDLDCIALTDINNTSAGLNFVRKAKEKNIKPVLGI 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                            +         V L    EGY  L                     
Sbjct: 63   DF--------------RNGIEQCY--VTLAKNNEGYLELN-------------------- 86

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-KKLFGDRLYVNLQRHRGY 192
            ++L +   + +          I  AF    +  A +R L   K  F +  ++ +  H   
Sbjct: 87   NFLAQHLHKKI------DFPEIAPAFENAFTIYAFERALELDKTHFTENEFIGIGIHD-L 139

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
            ++ R SQ      T+   LV      F S++D+ AH +L A+  + ++S+  +       
Sbjct: 140  NKLRFSQY----STYHDKLVLLLPVSFNSKKDFNAHRLLRAIDLNCLLSKLPKEEQALPD 195

Query: 253  YLKN-RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +     ++ ++F D P+ + N+ E+ + C+   +           K     ++ + N+L
Sbjct: 196  EIMFAPKKIENLFKDYPQIVSNSQEVLKSCNLNFKFAKERQN-QNLKTVFGSEQNDYNKL 254

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                  GL+               +   RL+ EL +I +  F  +FLI    I++A+  +
Sbjct: 255  LALCKKGLKE-------RYEEITTEITDRLEKELKLIKKKDFVSFFLINWKIIEYARSKD 307

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
                 GRGSGA S+ AY L ITD+DP+   L FERF+N  R S PDFDIDF    R++V 
Sbjct: 308  -YFYVGRGSGANSIVAYLLRITDVDPIELDLYFERFMNEYRSSPPDFDIDFSTWDREDVT 366

Query: 432  RYVQNKY-GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
             Y+  ++  + +VA + ++ + +   A+R++G+   +P +++D+L               
Sbjct: 367  AYIFEEFGKNNQVALLGSYVTFKHSGAVRELGKVFGLPKTEIDKLSSGKF---------- 416

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                     +A   D     +L+ +        + S HA GI+I D+P+      +    
Sbjct: 417  ---------KASELDTISQLILKYAAYFHKKPNYLSIHAGGILISDKPIHYFSATHLPP- 466

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL-----SLIPFDD 605
             + P  QF+M   E  GL KFD LG + L  ++ ++  + Q   +  L         F D
Sbjct: 467  KNFPTVQFDMHVAEDVGLCKFDILGQRGLGKIKDAVSIIKQNQPEAQLLDIRNPKPFFTD 526

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                 ++     +G F +ES  MR  L+ +  +  + ++A  S+ RPG   + ++     
Sbjct: 527  PNINAMIARAECIGCFYVESPAMRMLLKKLAVNDYQTLVAASSIIRPGVAKSGMMREYIL 586

Query: 666  NGKE--KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
              +   +    HP++  ++ +T G+++YQE V+++A   +  +L EADVLRR M  K + 
Sbjct: 587  RHRNSERRKEAHPVLWKIMPDTYGIMVYQEDVIKVAHHYAKLTLDEADVLRRGMSGKFRS 646

Query: 724  EMDKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              + Q   ++F S    NG  + +   I+  +  FA Y F K H+A+YAV SYQ+ ++K 
Sbjct: 647  REEFQYVKDKFRSNCIANGEPEDVVDEIWRQIESFAGYAFAKGHSASYAVESYQSLYLKC 706

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            ++P+E++ A++        K + +  +A+     I  P +N   +   +  N IY  L  
Sbjct: 707  YFPLEYMVATLN-NGGGFYKAEFYIHEAKMHGASIEAPCINKSEIQTSIYGNTIYLGLQH 765

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            ++G+   T   I+       + S +DF  RV    ++    E L+  GAL   G  +  L
Sbjct: 766  LEGLEKKTMLGIINNRVHSKYTSYDDFIQRVP---ISLEQQEILIRIGALRSLGKDKHSL 822

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L        + +          ++ F      F+   T +   VE++         +LGF
Sbjct: 823  LWE-----AHYKENTIPENESQQSFFKISLQNFT-LPTFKTSKVEDAFDHM----ELLGF 872

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
                +P  + K  L        +E    I   N+++A  +V+ +  KT KG R+ + TF 
Sbjct: 873  SL-FNPFFLMKKSLADY--LLAKELKLYID-QNVKVAGYLVTFKNTKTAKGLRMIFGTFL 928

Query: 1022 EPAKE-YEANFFP 1033
            +      +   FP
Sbjct: 929  DLDGAWIDTVLFP 941


>gi|312129356|ref|YP_003996696.1| DNA polymerase iii, alpha subunit [Leadbetterella byssophila DSM
            17132]
 gi|311905902|gb|ADQ16343.1| DNA polymerase III, alpha subunit [Leadbetterella byssophila DSM
            17132]
          Length = 1014

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 245/1029 (23%), Positives = 432/1029 (41%), Gaps = 112/1029 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  HS +SL  G + L  ++ +        +A+TD N +    +F +    AGI+P++G 
Sbjct: 3    LNCHSYHSLRYGTIPLEELVAEAKRCGVKTLALTDINTVTGIYDFEKACKDAGIKPVVGM 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++              +     +   + L   A+G + +  L++                
Sbjct: 63   EV--------------RKEDQLLY--IALAQNAQGIKEICTLLT---------------- 90

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
                E   EG  +L    +      F     +     L        +R Y+ + R     
Sbjct: 91   ----EHNCEGTPLL--PIAPEFKHLFTVYPLENCPPTLR-------NREYLGI-RPDEIH 136

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                 ++          +V      F  E +Y+ H +L A+  + V+S+ D    + ++ 
Sbjct: 137  SLIRPELRAYLDR----MVVLAPVTFRDENEYQLHRILRAIDKNVVLSKLDHFCKSHEYM 192

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
               +     ++   P+ ++NT  I  +CSF      P   +          +E+   L  
Sbjct: 193  RPEQEL-KELYKQYPQIIQNTQYILDQCSFSFDFKTPKNKKHFT----SSLEEDRLLLEK 247

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
             A  GLE          G    +   RL  EL VI  ++F+ YFLI  D ++++      
Sbjct: 248  LAYEGLEK-------RYGTENAEASARLKKELQVIHALRFNSYFLITWDIVRFSNSQGFL 300

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
               GRGSGA S+ +Y L IT+I P+   L FERFLN +R S PDFDID+    RD ++ Y
Sbjct: 301  -HIGRGSGANSIVSYCLGITNICPIELDLYFERFLNLNRKSPPDFDIDWSWKERDIILDY 359

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            +  KYG   VA   T    + ++ LR+VG+   +P  ++D L                  
Sbjct: 360  IFKKYGKHHVAFCGTNVEFKYRSILREVGKVFGLPKEELDVLTNSP-------------- 405

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                 +     +  V ++      LE      S HA GI+I + PL+    +        
Sbjct: 406  -----QSTHDQNSVVQQIHFYGSLLEKFPNQRSMHACGILISEEPLTTYSALEMPP-KGF 459

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP---FDDHETYH 610
            P+ QF+M   E+ GL KFD L  + +  +  S+  + +          P    D+ +   
Sbjct: 460  PIVQFDMHVAEEIGLEKFDILSQRGIGHINDSVKLIRENQGIEVDIRNPALSKDEAQANV 519

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGK 668
             L+   T+G F +ES  MR  L  ++ D    ++A  S+ RPG   + ++  Y  R N  
Sbjct: 520  YLSQGKTIGCFYIESPAMRGLLRRLKCDNYRTLVAASSIIRPGVAQSGMMREYIFRHNNP 579

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             +    HP+ +  L ET G+++YQE V+++A    G + ++ D+LRRAM  K +     Q
Sbjct: 580  GQFEYFHPVFEEHLGETYGIMVYQEDVIRVALYYGGIAEADGDILRRAMSGKGRSLSALQ 639

Query: 729  KER--FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + +  F++  +K G  + ++  ++  +  FA Y F K+H+A+YAV SYQ+ ++K +YP+E
Sbjct: 640  RVKDNFLASCAKQGHPEDLSREVYRQIESFAGYSFCKAHSASYAVESYQSLYLKVYYPLE 699

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+ A +  +     + + +  +AR     I+ P VN   V+  +    IY     ++ + 
Sbjct: 700  FMVAVINNQ-GGFYRTEVYIHEARMSGGNILNPCVNKSKVETSIYGKDIYLGFMHLQSLE 758

Query: 847  TTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I +E   +  +  LEDF  RV    +    LE L+F GA    G S+ +LL   
Sbjct: 759  ARIMNEIVVERDRNGEYLDLEDFIKRVP---VGLEALEILIFIGAFRFTGKSKNELLVQA 815

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
              +   A  + +                 S + TL K    +      +E  +LGF  S 
Sbjct: 816  RLLLTKA--IIRAPELIQAP---------SKEYTLPKL-ERSPFEDAFDEIELLGFPVSC 863

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
             P D+ K   +  G    ++ V       +++ A ++S++   T+ G+ + + T+ +   
Sbjct: 864  SPFDLLKT--KYRGSVLVKDLVH-HHKKEVKMLAYLISRKHVPTKLGT-MYFGTWIDVEG 919

Query: 1026 E-YEANFFP 1033
            + ++   FP
Sbjct: 920  QYFDTAHFP 928


>gi|197294579|ref|YP_001799120.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
           australiense]
 gi|171853906|emb|CAM11869.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
           australiense]
          Length = 918

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 261/903 (28%), Positives = 455/903 (50%), Gaps = 54/903 (5%)

Query: 18  SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDI 77
           S YSLL+  L L  ++ K   +    +A++D  NL+    F Q      I+PI+G +++ 
Sbjct: 9   SYYSLLDSLLPLEKLVLKAKENDYEFVALSDDYNLYGMPTFLQLCQKHDIKPILGLKINF 68

Query: 78  DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
             ++                 +++     +G + LI+L +      Q      + L  ++
Sbjct: 69  LWKN-------------QTGELLVYAKNDQGIKNLIQLATASKKEAQS----HLHLEQIE 111

Query: 138 EIGTEGLIMLTG-GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR 196
            +G +  I++ G        + F  +     ++ L   K +F + +++ +     +    
Sbjct: 112 ALGKDLFIIICGLCPFWE--KIFVNDQKNEFQEVLEKLKTIFSE-IFLGISFQSFFLEKL 168

Query: 197 ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT------- 249
              ++  +   E+P +  N + +   +  E + +L  + + T+ S+ D   +T       
Sbjct: 169 SDNLIDFSTHFEIPCLPVNKTNYDDAKAQETYQILAKMKNKTIYSEIDLSFLTKSEFDIR 228

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK---- 305
              Y +    +  +   +          +                         +K    
Sbjct: 229 YQKYPQIMDSLKQLIPKINYQTPLKKNFSLPSYLDFIEKKEKDLPKEVVFEKPEKKLFQN 288

Query: 306 -EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            + +  L+     GLE              + Y QR++ EL +I  + +  YFLIV+D +
Sbjct: 289 LDAKKYLKKIVYQGLEKF----LNPSKSKYEKYSQRINEELKIINDLNYENYFLIVSDLV 344

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           ++AKKNNI VGPGRGS +GS+  + L IT+IDPL+++L+FERFLNP R +MPD D+DF  
Sbjct: 345 KYAKKNNILVGPGRGSSSGSLVCFCLEITEIDPLKYNLIFERFLNPQRKTMPDIDLDFPD 404

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKA-ALRDVGRALQMPYSQVDRLCKLIPNDP 483
           ++R+ VI+Y++ KYG   VA IITFGS   K   ++++ +  ++   Q  +         
Sbjct: 405 NKREIVIQYIRQKYGLHHVANIITFGSFAKKNAIIKELLKFKKLMPFQEKQ--------- 455

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                   + +    +     D  +  LL+I+  LEGL R   TH AGI++    L Q +
Sbjct: 456 ----LFHFLENQKPNQITDDLDDQIKNLLQIASFLEGLPRFTGTHPAGIILSKDNLLQNI 511

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
           P+ +    +L  TQ+  K +E  GL+K D LGL +LT++++ +  + +     +L  IP 
Sbjct: 512 PLQKSNHLNLLQTQWEAKELETMGLLKIDLLGLHSLTIIEQIIAAIKESQKDFNLFSIPL 571

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY-N 662
           +D +TY LL+   TLG+FQLES   ++ L  M P+  ED++AL++L RPGPID+  ++  
Sbjct: 572 NDPKTYQLLSNAKTLGVFQLESGNAKKILTRMAPNNFEDLVALLALNRPGPIDSFDLFLK 631

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
           NR     + +    LID +LK T GVI+YQEQ+MQIA L + YSL+EAD+ RRA+ KK K
Sbjct: 632 NRNQFNSQKIYFDSLIDHILKPTHGVILYQEQIMQIASLFAKYSLAEADLFRRAISKKDK 691

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             + K+K+ F+    K G S +++  I++ + KFA+YGFNKSH+ AY++ISY+ A++KTH
Sbjct: 692 TVLLKEKKYFLEKTQKEGHSLSLSNQIYDYILKFANYGFNKSHSVAYSLISYRMAYLKTH 751

Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
           Y +EF+   +   +++  + K   ++A Q  I ++ P++      +   +N+++  L+ I
Sbjct: 752 YFIEFMTILLNDSLNDPLQTKALLKEAFQAGITLVKPNIFVSSDQYYFKNNQLFLPLSLI 811

Query: 843 KGVGTTTARHIMEASADKPFD-SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           KGV +   + +++    K F  S ++F  R+    LN  +L +L+  GALD  G +R  L
Sbjct: 812 KGVNSNFCKELIQERHKKNFTLSFKEFKQRL-FFCLNETILTNLILGGALDQMGLNRKTL 870

Query: 902 LQS 904
             +
Sbjct: 871 FHN 873


>gi|240047654|ref|YP_002961042.1| DNA polymerase III DnaE [Mycoplasma conjunctivae HRC/581]
 gi|239985226|emb|CAT05239.1| DNA polymerase III alpha subunit [Mycoplasma conjunctivae]
          Length = 978

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 294/1028 (28%), Positives = 479/1028 (46%), Gaps = 105/1028 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  +S YS L   + ++++++    +    + +TD NNLF+  +F        I PIIG 
Sbjct: 6    LHTNSEYSFLSSTIKIDSLINYAIQNNLSTLVLTDINNLFAVPKFYHLCKKNNINPIIGL 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            QL                        +LL     GYQ L  L S+  + +Q         
Sbjct: 66   QL-----------------EAENYHFILLAKNYLGYQHLSALSSK-KMHNQEIS------ 101

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              + E+  E +I++     G   +          +++L        D  Y          
Sbjct: 102  --ILELSNENVIIIDHPELGFYTKN---------KQQLKL------DNYY---------- 134

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                              V +N+    +    +   VL A     +   K   ++    +
Sbjct: 135  ------------------VVSNDVNLENAVFVQNRSVLYAKEEKYL---KYLYKIKGADW 173

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            +  +      +S   +            +  ++   P                  + L++
Sbjct: 174  VDKKFYDFQEWSIDVDESIIKRTNELVSNIQIEFPKPFFNLPDVPSF--TSSNANDNLKS 231

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
                 +  +  +       +    R+RL  E  VI+ + FS YFL++ DFI+WA+  NI 
Sbjct: 232  ILEDSVIKKQDEL-----KNYPQVRKRLSSEYKVISELNFSNYFLLIWDFIKWARSQNIL 286

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            +GPGRGS +GS+ +Y L IT I+PLR+ LLFERFLNP R +MPD DID    RR EVI Y
Sbjct: 287  IGPGRGSSSGSLISYLLDITQINPLRYDLLFERFLNPLRQTMPDIDIDIQDTRRSEVIDY 346

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            +Q  YG+E  A IITF +L A++  RDV +A  +  S+V+   KLI   P   +      
Sbjct: 347  IQKTYGYEHTATIITFSTLAARSVFRDVSKAFGISESEVNANAKLIK--PNMTLQECYDE 404

Query: 494  DDSRFREARLADPS-----VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            + S FR                + +IS+ LEG+ R + THAAGIV+   P+ QLVP   +
Sbjct: 405  EKSAFRSLIDRQEQDKTYKYKEIFKISKFLEGMPRQSGTHAAGIVVSKVPICQLVPT-LE 463

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
             +      QF+ +++E+  L+K D LGLK L ++Q+ L  +A+   ++    +P  D  T
Sbjct: 464  SKDGYNQVQFSAEYLEEFSLLKIDLLGLKNLNIVQQILTLIAKENHELSFEDLPLFDAAT 523

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
             +LL++  T GIFQLES GM   L G+  D IED+IA +SL+RPGP+  I +Y  RKN K
Sbjct: 524  NNLLSSGLTSGIFQLESPGMSSTLRGVGVDSIEDVIATISLFRPGPLKQIPIYKQRKNNK 583

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             K  SI    D ++  T G+IIYQEQ+MQI Q ++G++L++AD++R A+ KK + ++   
Sbjct: 584  IKWESISYEYDQIVAPTYGIIIYQEQIMQICQQIAGFNLAQADIIRVAISKKDESKLIAI 643

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K+ FI  A K G        I+EL+ KFADYGFNK+HAAAYA ++Y+ A++KT +P +F 
Sbjct: 644  KDSFIEAAIKKGHKLEYIEKIYELIYKFADYGFNKAHAAAYATLAYKMAYLKTKFPAQFY 703

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--FKVGDNRIYYSLAAIKGVG 846
            +  ++ E  + E IKK+  +A++   ++  P +N    +  F + +  I+  L  IKG+G
Sbjct: 704  SCLISNENGSHENIKKYALEAQKSGFKVCQPDINHSFENATFDLEEKLIFLPLTMIKGIG 763

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            +   R +++   A   + +  DF  R+     +  ++  L+ A AL  FG S+  LL S+
Sbjct: 764  SNYIRPLLKEREAKGKYSNFIDFFLRMKIINFSETLIIKLIKASALASFG-SQDSLLASV 822

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            +  + Y   + ++   +           F+    L++  + +     +NE   LG  FS 
Sbjct: 823  EIAKNYYPCILEDAKGEKY---IDYSQVFNIPFVLKEVEI-DYQQTIKNEIEFLGMQFSK 878

Query: 966  HPL-DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             P+    K  ++          V         L  +V +    K++ GS    ++ S+  
Sbjct: 879  PPIPKALKNQIK---------LVDLEANQQYSLNLVVNNFALLKSKAGSSYAKISLSDFD 929

Query: 1025 KEYEANFF 1032
             + +   F
Sbjct: 930  TQVDVLLF 937


>gi|54020612|ref|YP_116107.1| DNA polymerase III DnaE [Mycoplasma hyopneumoniae 232]
 gi|53987785|gb|AAV27986.1| DNA polymerase III alpha chain 2 [Mycoplasma hyopneumoniae 232]
          Length = 985

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 282/962 (29%), Positives = 462/962 (48%), Gaps = 92/962 (9%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L   + Y+ L   + L++++     +    + ITD N++F   +F +      I P+IG 
Sbjct: 6   LHTRTEYTFLSSTIKLDSLIKFALENNLKTLVITDLNSMFGVPKFYKLCKQNKINPVIGL 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           +++I+                   + +LL     GY  L E  S+        +   + L
Sbjct: 66  EIEIEN-----------------FNFILLAKNYSGYVILSEFSSK------KTKKKDLFL 102

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
           + L E   + +I++     G   +     S   AEK+L           Y+        +
Sbjct: 103 TDLAE--KDDIIIVDHPKKGFYAQKKEQLSKLFAEKQLK--------NYYI------VEN 146

Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
             +    V L   +   L+     ++L           ++    T          +   +
Sbjct: 147 NPKIENAVYLQERN---LLFAEEKIYLEA---------LSKIKGTT-------LDSSTKF 187

Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
                    I   + +     VE  +     +  +          + D     E + L  
Sbjct: 188 FDFNKWEQEIDPIIIKRTNYLVENIQIQFPKIDFN--------LPDLDHKNGLESDLLLK 239

Query: 314 KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
           K +       A            ++ RL +E   I ++KF+ YFLI+ DF++WA+KN I 
Sbjct: 240 KILK-----EAVQNRRIELSNYKWKARLQYEYETICKLKFTNYFLIIWDFLKWARKNEIL 294

Query: 374 VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
           +GPGRGS +GS+ AY L IT ++PL++ L+FERFLNP R++MPD DID    RR EVI Y
Sbjct: 295 IGPGRGSASGSLVAYLLEITSVNPLKYDLIFERFLNPQRITMPDIDIDIQDTRRQEVIDY 354

Query: 434 VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
           +  KYG +  A IITF +L AK+  RD+ +   +P +Q+++  KLIPN+    +S     
Sbjct: 355 LFEKYGPDHCATIITFSTLAAKSVFRDISKTFGIPETQINKNAKLIPNNAN--LSQLYDQ 412

Query: 494 DDSRFREARL---------ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             S FR                   ++ +IS  LEG+ R +STHAAGIV+   P+++LVP
Sbjct: 413 KSSEFRRLIEKGDNFKAENNSEIYKKIYKISAFLEGMPRQSSTHAAGIVLSKIPITKLVP 472

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
           ++   + +L   Q+  ++IE   L+K D LGLK LT++   L  +   G K+  + +P  
Sbjct: 473 VHN-SKENLNQIQYAAEFIEDFSLLKIDLLGLKNLTIVANILAKINSDGHKITFNQLPIS 531

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
           ++ T +LL+   T GIFQLES GM  +++ +    I DIIA++SL+RPGPI  I  Y   
Sbjct: 532 ENSTNNLLSQGKTSGIFQLESPGMTASIKKIGVSSINDIIAIISLFRPGPIQQIPTYTKN 591

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           K  +     I P  D +++ T GVIIYQEQ+MQI Q+++G++L +AD++R A+ KK + +
Sbjct: 592 K-ERNNWEKIFPEYDKIVESTFGVIIYQEQIMQICQVVAGFNLEQADIIRVAISKKDETK 650

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           +DK KE FI   +  G    +  +I+ L+ KF+DYGFNK+HA AYA ++Y+ A++K  Y 
Sbjct: 651 LDKIKENFIKNGTNLGYEPKLVEHIYNLIYKFSDYGFNKAHAVAYATLAYKMAYLKAKYS 710

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--FKVGDNRIYYSLAAI 842
             F    ++ E     KIKK+  +AR F  +I  P++N    +  F  G N I+  L  +
Sbjct: 711 AYFFVELISNENGAQAKIKKYVGEARDFGFKIHRPNINFSTENAVFDKGKNTIFLPLLMV 770

Query: 843 KGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           KG+GT   + I++    +  + +  DF  R+     ++  +E L+FA  L  FG ++  L
Sbjct: 771 KGLGTIAVKTIIDERSKNGIYKNFLDFIKRMKLVNFSKVAIEKLIFANTLSDFG-NQETL 829

Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             + + +  +A +V  ++     N+         D   LEK    +    +ENE + LG 
Sbjct: 830 AHNFELLWNHASFVLNDKDG---NLVLTTDNFGLDLEFLEKIP-YSQEKNYENEVKYLGM 885

Query: 962 YF 963
            F
Sbjct: 886 SF 887


>gi|144575533|gb|AAZ53945.2| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae 7448]
          Length = 981

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 283/966 (29%), Positives = 461/966 (47%), Gaps = 100/966 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L   + Y+ L   + L++++     +    + ITD N++F   +F +      I P+IG 
Sbjct: 6   LHTRTEYTFLSSTIKLDSLIKFALENNLKTLVITDLNSMFGVPKFYKLCKQNKINPVIGL 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           +++I+                   + +LL     GY  L E  S+        +   + L
Sbjct: 66  EIEIEN-----------------FNFILLAKNYSGYVILSEFSSK------KTKKKDLFL 102

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD----RLYVNLQRH 189
           + L E   + +I++     G   +                  KLFG+      Y+     
Sbjct: 103 TDLAE--KDDIIIVDHPKKGFYAQKK------------EQLSKLFGEKQLKNYYI----- 143

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              +  +    V L   +   L+     ++L           ++    T          +
Sbjct: 144 -VENNPKIENAVYLQERN---LLFAEEKIYLEA---------LSKIKGTT-------LDS 183

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              +         I   + +     VE  +     +  +          + D     E +
Sbjct: 184 STKFFDFNKWEQEIDPIIIKRTNYLVENIQIQFPKIDFN--------LPDLDHKNGLESD 235

Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            L  K +       A            ++ RL +E   I ++KF+ YFLI+ DF++WA+K
Sbjct: 236 LLLKKILK-----EAVQNRRIELSNYKWKARLQYEYETICKLKFTNYFLIIWDFLKWARK 290

Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
           N I +GPGRGS +GS+ AY L IT ++PL++ L+FERFLNP R++MPD DID    RR E
Sbjct: 291 NEILIGPGRGSASGSLVAYLLEITSVNPLKYGLIFERFLNPQRITMPDIDIDIQDTRRQE 350

Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
           VI Y+  KYG +  A IITF +L AK+  RD+ +   +P  Q+++  KLIPN+    +S 
Sbjct: 351 VIDYLFEKYGPDHCATIITFSTLAAKSVFRDISKIFGIPEIQINKNAKLIPNNAN--LSQ 408

Query: 490 QAIADDSRFREARL---------ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                 S FR                   ++ +IS  LEG+ R +STHAAGIV+   P++
Sbjct: 409 LYNQKSSEFRRLIEKGDNFKAENNSEIYKKIYKISAFLEGMPRQSSTHAAGIVLSKIPIT 468

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
           +LVP++   + +L   Q+  ++IE   L+K D LGLK LT++   L  +   G K+  + 
Sbjct: 469 KLVPVHN-SKENLNQIQYAAEFIEDFSLLKIDLLGLKNLTIVANILAKINSDGHKITFNQ 527

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
           +P  ++ T +LL+   T GIFQLES GM  +++ +    I DIIA++SL+RPGPI  I  
Sbjct: 528 LPISENSTNNLLSQGKTSGIFQLESPGMTASIKKIGVSSINDIIAIISLFRPGPIQQIPT 587

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
           Y   K  +     I P  D +++ T GVIIYQEQ+MQI Q+++G++L +AD++R A+ KK
Sbjct: 588 YAKNK-ERNNWEKIFPEYDKIVESTFGVIIYQEQIMQICQVVAGFNLEQADIIRVAISKK 646

Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            + ++DK KE FI   +  G    +  +I+ L+ KF+DYGFNK+HA AYA ++Y+ A++K
Sbjct: 647 DETKLDKIKENFIKNGTNLGYEPKLVEHIYNLIYKFSDYGFNKAHAVAYATLAYKMAYLK 706

Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--FKVGDNRIYYS 838
             YP  F    ++ E     KIKK+  +AR F  +I  P++N    +  F  G N I+  
Sbjct: 707 AKYPAYFFVELISNENGAQAKIKKYVGEARNFGFKIHRPNINFSTENAVFDKGKNTIFLP 766

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           L  +KG+GT   + I++    +  + +  DF  R+     ++  +E L+FA  L  FG +
Sbjct: 767 LLMVKGLGTIAIKTIIDERSKNGIYKNFLDFIKRMKLVNFSKVAIEKLIFANTLSDFG-N 825

Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
           +  L  + + +  +A +V  ++     N+         D   LEK    N    +ENE +
Sbjct: 826 QETLAHNFELLWNHASFVLNDKDG---NLVLTTDNFGLDLEFLEKIP-YNQEKNYENEVK 881

Query: 958 VLGFYF 963
            LG  F
Sbjct: 882 YLGMSF 887


>gi|72080910|ref|YP_287968.1| DNA polymerase III DnaE [Mycoplasma hyopneumoniae 7448]
          Length = 989

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 283/966 (29%), Positives = 461/966 (47%), Gaps = 100/966 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L   + Y+ L   + L++++     +    + ITD N++F   +F +      I P+IG 
Sbjct: 14  LHTRTEYTFLSSTIKLDSLIKFALENNLKTLVITDLNSMFGVPKFYKLCKQNKINPVIGL 73

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           +++I+                   + +LL     GY  L E  S+        +   + L
Sbjct: 74  EIEIEN-----------------FNFILLAKNYSGYVILSEFSSK------KTKKKDLFL 110

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD----RLYVNLQRH 189
           + L E   + +I++     G   +                  KLFG+      Y+     
Sbjct: 111 TDLAE--KDDIIIVDHPKKGFYAQKK------------EQLSKLFGEKQLKNYYI----- 151

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              +  +    V L   +   L+     ++L           ++    T          +
Sbjct: 152 -VENNPKIENAVYLQERN---LLFAEEKIYLEA---------LSKIKGTT-------LDS 191

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              +         I   + +     VE  +     +  +          + D     E +
Sbjct: 192 STKFFDFNKWEQEIDPIIIKRTNYLVENIQIQFPKIDFN--------LPDLDHKNGLESD 243

Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            L  K +       A            ++ RL +E   I ++KF+ YFLI+ DF++WA+K
Sbjct: 244 LLLKKILK-----EAVQNRRIELSNYKWKARLQYEYETICKLKFTNYFLIIWDFLKWARK 298

Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
           N I +GPGRGS +GS+ AY L IT ++PL++ L+FERFLNP R++MPD DID    RR E
Sbjct: 299 NEILIGPGRGSASGSLVAYLLEITSVNPLKYGLIFERFLNPQRITMPDIDIDIQDTRRQE 358

Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
           VI Y+  KYG +  A IITF +L AK+  RD+ +   +P  Q+++  KLIPN+    +S 
Sbjct: 359 VIDYLFEKYGPDHCATIITFSTLAAKSVFRDISKIFGIPEIQINKNAKLIPNNAN--LSQ 416

Query: 490 QAIADDSRFREARL---------ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                 S FR                   ++ +IS  LEG+ R +STHAAGIV+   P++
Sbjct: 417 LYNQKSSEFRRLIEKGDNFKAENNSEIYKKIYKISAFLEGMPRQSSTHAAGIVLSKIPIT 476

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
           +LVP++   + +L   Q+  ++IE   L+K D LGLK LT++   L  +   G K+  + 
Sbjct: 477 KLVPVHN-SKENLNQIQYAAEFIEDFSLLKIDLLGLKNLTIVANILAKINSDGHKITFNQ 535

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
           +P  ++ T +LL+   T GIFQLES GM  +++ +    I DIIA++SL+RPGPI  I  
Sbjct: 536 LPISENSTNNLLSQGKTSGIFQLESPGMTASIKKIGVSSINDIIAIISLFRPGPIQQIPT 595

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
           Y   K  +     I P  D +++ T GVIIYQEQ+MQI Q+++G++L +AD++R A+ KK
Sbjct: 596 YAKNK-ERNNWEKIFPEYDKIVESTFGVIIYQEQIMQICQVVAGFNLEQADIIRVAISKK 654

Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            + ++DK KE FI   +  G    +  +I+ L+ KF+DYGFNK+HA AYA ++Y+ A++K
Sbjct: 655 DETKLDKIKENFIKNGTNLGYEPKLVEHIYNLIYKFSDYGFNKAHAVAYATLAYKMAYLK 714

Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--FKVGDNRIYYS 838
             YP  F    ++ E     KIKK+  +AR F  +I  P++N    +  F  G N I+  
Sbjct: 715 AKYPAYFFVELISNENGAQAKIKKYVGEARNFGFKIHRPNINFSTENAVFDKGKNTIFLP 774

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           L  +KG+GT   + I++    +  + +  DF  R+     ++  +E L+FA  L  FG +
Sbjct: 775 LLMVKGLGTIAIKTIIDERSKNGIYKNFLDFIKRMKLVNFSKVAIEKLIFANTLSDFG-N 833

Query: 898 RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
           +  L  + + +  +A +V  ++     N+         D   LEK    N    +ENE +
Sbjct: 834 QETLAHNFELLWNHASFVLNDKDG---NLVLTTDNFGLDLEFLEKIP-YNQEKNYENEVK 889

Query: 958 VLGFYF 963
            LG  F
Sbjct: 890 YLGMSF 895


>gi|331703662|ref|YP_004400349.1| DNA polymerase III subunit alpha [Mycoplasma mycoides subsp. capri LC
            str. 95010]
 gi|328802217|emb|CBW54371.1| DNA polymerase III alpha subunit [Mycoplasma mycoides subsp. capri LC
            str. 95010]
          Length = 987

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 277/1017 (27%), Positives = 465/1017 (45%), Gaps = 85/1017 (8%)

Query: 19   SYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDID 78
             Y  LE  ++++  ++ I  ++      ++T+ ++   EF +KA    I+PIIG  ++ +
Sbjct: 12   QYDFLESLITIDQYIEFIKKNKLSYAFYSETHTMYGVAEFFKKATDNNIKPIIGLTIEFE 71

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
                                +++     +GYQ ++  VS  +L D            ++E
Sbjct: 72   DS----------------TKLIIYAKNKKGYQ-ILNFVS-SFLNDGFN---HYDYE-IKE 109

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRES 198
               E L+       G I+   F                   D  Y               
Sbjct: 110  YILE-LVNNNVVVVGLINDLDFK----------SYLINKLNDDFY--------------- 143

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
                      L     N   +L   D + + +L A+  +  + Q           +    
Sbjct: 144  ----DVKELNL---YFNQISYLDINDQKTYSILNAIKTNKTIEQIQNINNYFYPDIDYLI 196

Query: 259  EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
            +  S+ +      E   ++                + + K  +         LR   +  
Sbjct: 197  KNYSLENIKKVINEINSKVDFNLFDS-------NEKHLVKYKNINNLSSYEYLRQVCLLS 249

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
            L+    Q  I      + Y  RL++EL VI +M FS YFLIV+D++ +AKKN+I VGPGR
Sbjct: 250  LKK--YQQKIKPNLDLKLYINRLNYELEVIKQMGFSDYFLIVSDYVNFAKKNDILVGPGR 307

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GS AGS+ +Y L ITDIDPL + LLFERFLNPDR ++PD D+DF  +RR+EV+ Y+  KY
Sbjct: 308  GSAAGSLISYLLRITDIDPLEYDLLFERFLNPDRSNLPDIDLDFQDNRREEVLEYLFEKY 367

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G   V  I T+ ++  K A RDV R   +    V+++ K++               +++ 
Sbjct: 368  GKYHVGMITTYQTIGYKMAWRDVCRVFNIDLLIVNKISKVLDQYTNSDFLEFI--KENKL 425

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
                  +     +     K+ GL R  STHAAGIV+ D  L +LVP+ +   + +  TQF
Sbjct: 426  LNDYFQNDLFKEIFITMHKIVGLPRQTSTHAAGIVLTDCDLRELVPI-KIGFNGINQTQF 484

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGT 617
            +M +++  GLIK D LGL+ LT +Q+        + +K+ L+ I  +D + + LL  K T
Sbjct: 485  DMNYLDALGLIKMDILGLRNLTTIQEIKHLIYLNQNLKISLNKIDLNDRKAFELLKNKQT 544

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
             GIFQLES GM   +  MQ D IE I    +LYRPGP + I +Y   K    K   I   
Sbjct: 545  SGIFQLESKGMTDLISKMQVDSIEQISIASALYRPGPQEMIPIYLENKKTN-KFKIIDKS 603

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            +  +LK T G+I+YQEQVMQ+   ++ +S ++AD++RRAM KK  + M   K  FI+ A 
Sbjct: 604  VYEILKPTYGIIVYQEQVMQMLNKVANFSYAKADIIRRAMSKKNNKVMQSMKLEFINSAI 663

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KN  S   A  I+  + KF++YGFNKSH+ +Y+ ISY  A+ K H+  EF  + +   + 
Sbjct: 664  KNNFSYNKANLIWNWIEKFSNYGFNKSHSISYSYISYWLAYFKAHFTTEFYTSLLDQNIG 723

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI--ME 855
            N  K +++ ++   + I++  PSV     ++++ + +IY  L  IK +G    + I   +
Sbjct: 724  NEIKTQQYIKELYDYKIKVNKPSVINSNFNYQIINKQIYMPLTCIKSIGYEVVKKINLAK 783

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
            +  +  +  + +F   +  +K+N  VL++L+ AGALD F Y++  ++++LD +   A   
Sbjct: 784  SENENMYLDIHNFILAMIKQKINVNVLQTLIKAGALDIFNYNKKTMIENLDLLISQANAY 843

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            ++                  +KI L  +      +    E+ + GF+   +P+   K   
Sbjct: 844  KQVNNI-----------LDDEKINLIIYDEYEDEILASFEKELYGFFIDQNPILKLK--- 889

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +           +   ++  ++ K +  +++ +VT  +   E E   F
Sbjct: 890  TNNFNLNLIDISKLEYNKVQVVLGYILKIKEIKDKNNNKMAFVTVFDNTSELELTIF 946


>gi|71893932|ref|YP_279378.1| DNA polymerase III DnaE [Mycoplasma hyopneumoniae J]
 gi|71852059|gb|AAZ44667.1| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae J]
          Length = 981

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 282/962 (29%), Positives = 462/962 (48%), Gaps = 92/962 (9%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L   + Y+ L   + L++++     +    + ITD N++F   +F +      I P+IG 
Sbjct: 6   LHTRTEYTFLSSTIKLDSLIKFALENNLKTLVITDLNSMFGVPKFYKLCKQNKINPVIGL 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           +++I+                   + +LL     GY  L E  S+        +   + L
Sbjct: 66  EIEIEN-----------------FNFILLAKNYSGYVILSEFSSK------KTKKKDLFL 102

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
           + L E   + +I++     G   +          +++L      FG+             
Sbjct: 103 TDLAE--KDDIIIVDHPKKGFYAQK---------KEQLGKL---FGEN------------ 136

Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
           + +   +V+       P +  N           A + +   A S +         +   +
Sbjct: 137 QLKNYYIVE-----NNPKIE-NAVYLQERNLLFAEEKIYLEALSKIKGT---TLDSSTKF 187

Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
                    I   + +     VE  +     +  +          + D     E + L  
Sbjct: 188 FDFNKWEQEIDPIIIKRTNYLVENIQIQFPKIDFN--------LPDLDHKNGLESDLLLK 239

Query: 314 KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
           K +       A            ++ RL +E   I ++KF+ YFLI+ DF++WA+KN I 
Sbjct: 240 KILK-----EAVQNRRIELSNYKWKARLQYEYETICKLKFTNYFLIIWDFLKWARKNEIL 294

Query: 374 VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
           +GPGRGS +GS+ AY L IT ++PL++ L+FERFLNP R++MPD DID    RR EVI Y
Sbjct: 295 IGPGRGSASGSLVAYLLEITSVNPLKYDLIFERFLNPQRITMPDIDIDIQDTRRQEVIDY 354

Query: 434 VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
           +  KYG +  A IITF +L AK+  RD+ +   +P  Q+++  KLIPN+    +S     
Sbjct: 355 LFEKYGPDHCATIITFSTLAAKSVFRDISKTFGIPEIQINKNAKLIPNNAN--LSQLYDQ 412

Query: 494 DDSRFREARL---------ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
             S FR                   ++ +IS  LEG+ R +STHAAGIV+   P+++LVP
Sbjct: 413 KSSEFRRLIEKGDNFKAENNSEIYKKIYKISAFLEGMPRQSSTHAAGIVLSKIPITKLVP 472

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
           ++   + +L   Q+  ++IE   L+K D LGLK LT++   L  +   G K+  + +P  
Sbjct: 473 VHN-SKENLNQIQYAAEFIEDFSLLKIDLLGLKNLTIVANILAKINSDGHKITFNQLPIS 531

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
           ++ T +LL+   T GIFQLES GM  +++ +    I DIIA++SL+RPGPI  I  Y   
Sbjct: 532 ENSTNNLLSQGKTSGIFQLESPGMTASIKKIGVSSINDIIAIISLFRPGPIQQIPTYAKN 591

Query: 665 KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           K  +     I P  D +++ T GVIIYQEQ+MQI Q+++G++L +AD++R A+ KK + +
Sbjct: 592 K-ERNNWEKIFPEYDKIVESTFGVIIYQEQIMQICQVVAGFNLEQADIIRVAISKKDETK 650

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           +DK KE FI   +  G    +  +I+ L+ KF+DYGFNK+HA AYA ++Y+ A++K  YP
Sbjct: 651 LDKIKENFIKNGTNLGYEPKLVEDIYNLIYKFSDYGFNKAHAVAYATLAYKMAYLKAKYP 710

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--FKVGDNRIYYSLAAI 842
             F    ++ E     KIKK+  +AR F  +I  P++N    +  F  G N I+  L  +
Sbjct: 711 AYFFVELISNENGAQAKIKKYVGEARNFGFKIHRPNINFSTENAVFDKGKNTIFLPLLMV 770

Query: 843 KGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           KG+GT   + I++    +  + +  DF  R+     ++  +E L+FA  L  FG ++  L
Sbjct: 771 KGLGTIAIKTIIDERSKNGIYKNFLDFIKRMKLVNFSKVAIEKLIFANTLSDFG-NQETL 829

Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
             + + +  +A +V  ++     N+         D   LEK    N    +ENE + LG 
Sbjct: 830 AHNFELLWNHASFVLNDKDG---NLVLTTDNFGLDLEFLEKIP-YNQEKNYENEVKYLGM 885

Query: 962 YF 963
            F
Sbjct: 886 SF 887


>gi|218847814|ref|YP_002454607.1| DNA polymerase III, alpha subunit [Bacillus cereus G9842]
 gi|218546316|gb|ACK98708.1| DNA polymerase III, alpha subunit [Bacillus cereus G9842]
          Length = 1163

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 265/1010 (26%), Positives = 445/1010 (44%), Gaps = 134/1010 (13%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIG-TEGLIMLTGGS 151
                  +VLL    +G + L  +VS  ++ +      R  L+++++ G    +I  +   
Sbjct: 181  DHGNFHMVLLAINNKGLEDLYAIVSDAHI-NGFYSDPRTDLAYIRDRGLGNNIIATSACL 239

Query: 152  SGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVV-QLAYTHELP 210
                 +       + A++ +   K  F +  Y+  Q      +   + V+ QLA     P
Sbjct: 240  GSYFSQLVLAGRIEEAKEHIHECKDTFHE-FYLEKQATEIPKQIYVNAVIDQLAAETNTP 298

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
             + T +  + ++ED E HD+L+  +    ++ ++R     + ++K   EM+   +D+  A
Sbjct: 299  KILTTDVHYANKEDNEIHDILVTSSIGKCINDENRLVYAHEFWMKTEEEMLVKCNDIE-A 357

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
             +NT+ IA + +  L                D  +  E+ LR KA  GL        I  
Sbjct: 358  WKNTMRIANKVNVTLPK-----EPLFPNFIVDGSETVEDLLRKKAWDGLFEMALTDGIDV 412

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                  Y +RL +EL+VI    F  YFLI  D I  A K    VGPGRGSGAGS+    L
Sbjct: 413  NS----YSKRLQYELDVICSEGFQDYFLIEEDMIDAAVKAGFLVGPGRGSGAGSLVCRCL 468

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             IT +DP++++LLFERFLNP+R   PD D+D+  +    V+ Y++ KYG ++VAQI T G
Sbjct: 469  KITWLDPIKYNLLFERFLNPERAGYPDLDVDYSYEGTRFVLNYLKQKYGIDKVAQIGTKG 528

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            +L A+A  R  G+ L +  +  D   K IP+ P   +      +       +       +
Sbjct: 529  TLAARAVCRRTGKTLGLDTATQDAFAKAIPSRPGITLKEAYAEES----MVQQYAQMYPK 584

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
              E    LEG       HA GIV+   P++++ P+  D    +  TQ++M WIEK  L+K
Sbjct: 585  WWEAMLALEGHVSQVGVHAGGIVLSPEPITKVTPLRTDS-EGIETTQYDMVWIEKL-LVK 642

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK-GTLGIFQLESSGMR 629
            FD L ++TL +++K+L+F    G       I  +D   +  +       GIFQ ES   +
Sbjct: 643  FDVLKVETLDIVKKTLEFAGLWGKMNIYRDIDINDPLVFERVYNALNLSGIFQCESDLFK 702

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
            + +  M+P+  EDI  +V+L RPGP+D I  Y  RK G+E++      ++P+L+ET GV 
Sbjct: 703  KIISEMKPNSFEDISVIVALGRPGPLDLIPTYVARKWGREELKYPFSALEPVLQETYGVW 762

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-------------------------- 723
            +YQEQ+MQ +++L G +L ++D++R+ + KK  +                          
Sbjct: 763  VYQEQIMQASRVLGGLTLGQSDMIRKGVSKKKHDLMNRWIDLMIYGSEEYKKRHAELVLQ 822

Query: 724  -------------EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
                         + D  K+ ++ GA   G  +   + I     KF +Y FNK+H+AAYA
Sbjct: 823  YPKDAEGKPTLWVDYDYAKQPYVEGAINRGFDEQTLLQIKIDWIKFGNYCFNKAHSAAYA 882

Query: 771  VISYQTAWMKTHYPVEFLAASMTL-----EMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            ++S  TAW+K +YPVEF++A +T      + +   K   + ++  +  I I+PP +N   
Sbjct: 883  LLSVVTAWLKCYYPVEFMSALLTFSERKKDKNKKPKNIYYMKECEEMGITILPPDINESM 942

Query: 826  VDFKVGD-----------------------NRIYYSLAAIKGVGTTTARHIMEASADKPF 862
              +                           N I Y L++I GV   T   IM    ++P+
Sbjct: 943  AGWAPIKTETKGIFLANSFAGFTTETINKSNEIRYGLSSIAGVSGETVDEIM---QNRPY 999

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             S+ED   RVD  K+N+  + +L+ +G+ D    +R  LL++                  
Sbjct: 1000 KSVEDMLLRVDGSKVNKTKVTALIKSGSFDNLSKNRNLLLRNYMQ--------------- 1044

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
                F +E+     K T       N     + E+   G   +       K    K+    
Sbjct: 1045 ----FRNEEYEHIPKTT-------NKGDIVDFEKECFGVSIT------VKSRWEKL---- 1083

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     G + +   ++ S +  K R G     ++     +      +
Sbjct: 1084 -------EEGKSAQFTGVIRSVESWKARTGKTHYTLSLETQEEVIMVTVW 1126



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 2/96 (2%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           HL VHS  S+LEG  ++ +++ K  +    A+ ITD     +  +F  +  A GI+PI G
Sbjct: 6   HLHVHSEESVLEGLSNVKHLVAKAKSSGMTALGITDHGVCSAIPDFITECLANGIKPIPG 65

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           C++       +K  +  +         +L+    +G
Sbjct: 66  CEVYTTKNRLIKNEDMVEKRIKLCEKYMLI--DKKG 99


>gi|146301508|ref|YP_001196099.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101]
 gi|146155926|gb|ABQ06780.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101]
          Length = 1018

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 238/1028 (23%), Positives = 420/1028 (40%), Gaps = 108/1028 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  HS +SL  G + +  ++    +    A+A+TD N +    +F +    AGI+P+IG 
Sbjct: 3    LNCHSFHSLRYGTIPVEELVQLAVSLGVQAMALTDINTVTGIYDFIKLCNTAGIKPLIGM 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +     Q                   + L    +G   +   ++  +       +     
Sbjct: 63   EFRCRHQ----------------LHYIGLAKNTQGLAGMNRFLT-GH---NFDGTP---- 98

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
                              +  I  AFF    +   + L        +  Y+ +Q      
Sbjct: 99   --------------LPLHAPEIADAFFIYPLENTPQVLR-------ENEYIGIQP----- 132

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
               +  V+      +  +V      F S+ +Y+ H +L A+  + +     R +      
Sbjct: 133  EELQKLVLSEWKDRQHKMVVLQPVTFRSKTEYQLHKILRAIDLNVL---GSRLKPEDCCR 189

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
              +    +       +     +                     +K     ++ +   L  
Sbjct: 190  ASDTMMRLEKLLFFYQHYPQIIANTEYIIEQCNFEFDYSTPKNKKYYTQNRQTDIELLTI 249

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
             A  GLE R  +     G        R+  EL VI +++FSGYFLI  D I+++      
Sbjct: 250  LAQQGLEWRYGKDNTEAG-------ARMIKELKVIDQLEFSGYFLITWDIIRYSSSKGFL 302

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
               GRGSGA S+ AY L ITDI PL   L FERFLN +R S PDFDID+    RD ++ Y
Sbjct: 303  -HIGRGSGANSIIAYCLGITDICPLELDLYFERFLNLNRKSPPDFDIDWSWKERDVILEY 361

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            + ++YG + VA   T    + ++  R+VG+   +P  ++D L K   N            
Sbjct: 362  IFSRYGADHVAFCGTNVEFKYRSIFREVGKVFGLPKEELDALAKNPMN------------ 409

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                       +  V ++ +    LE      S H+ GI+I + P++   P+        
Sbjct: 410  -------LHPTNKVVRQVQQYGMLLEKYPNQRSMHSCGILISEEPITNYTPLEMPP-KGF 461

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVDLSLIPFDDHETYH 610
            P+  F+M   E  GL KFD L  + +  +  S+  + +     + +  + I  D+     
Sbjct: 462  PIVLFDMHTAEDIGLEKFDILSQRGIGHIDDSVKVIEKNTGIRINIRDTSISKDEALCNQ 521

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGK 668
             L    T+G F +ES  MR  L  ++    + ++A  S+ RPG   + ++  Y  R N  
Sbjct: 522  FLAAGKTIGCFYIESPAMRGLLRRLKCGDYKTLVAASSIIRPGVAQSGMMKEYIYRHNHP 581

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            +K    HP+    L ET G+++YQE V++IAQ   G   ++ D+LRRAM  K + +   Q
Sbjct: 582  DKFEYFHPVFKEQLGETYGIMVYQEDVIKIAQHFGGLPAADGDILRRAMSGKGRSKAALQ 641

Query: 729  KER--FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +  F +  +  G  + ++  I+  +  FA Y F K+H+A+YAV SYQ+ ++K +YP+E
Sbjct: 642  KVKDNFFASCAAQGHPQALSAEIYRQIESFAGYSFCKAHSASYAVESYQSLYLKVNYPIE 701

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+ A +  +     + + +  +AR     I PP VN    +  +    IY     ++G+ 
Sbjct: 702  FMVAVINNQ-GGFYRTEVYVHEARMSGGIIHPPCVNKSGYETTLYGKNIYLGFMHLQGLE 760

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
              TA  I E    +  + SLEDF +R+    +    ++ L+F GA    G ++ QLL   
Sbjct: 761  YKTAVMIEEERCKNGDYTSLEDFINRIP---IGIEGVQILIFIGAFHFTGKTKNQLLVIS 817

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
              +    +    +     E          + +  L      +      +E  +LGF  S 
Sbjct: 818  RLLLVNYKPNSSSLKLIQEP---------AKEFQLPAL-ERSLFEDAFDEIELLGFPVSC 867

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
             P ++ +   R  G    ++ +       +R+ A ++S++   T+ G  + + T+ +   
Sbjct: 868  SPFELLQTSFR--GDVMAKDLLG-HHKKQVRMLAYLISRKHVPTKMG-AMYFGTWIDAQG 923

Query: 1026 E-YEANFF 1032
            E ++   F
Sbjct: 924  EFFDTAHF 931


>gi|302518213|ref|ZP_07270555.1| LOW QUALITY PROTEIN: DNA polymerase subunit III, alpha [Streptomyces
            sp. SPB78]
 gi|302427108|gb|EFK98923.1| LOW QUALITY PROTEIN: DNA polymerase subunit III, alpha [Streptomyces
            sp. SPB78]
          Length = 895

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 203/725 (28%), Positives = 332/725 (45%), Gaps = 32/725 (4%)

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
               +  A  +G  A+ Y +R+  EL++I    F+ YFL VA  +   +   I V   RGS
Sbjct: 70   RGWSGAATTRGPKARAYWERMHHELDIIGHHDFASYFLTVARVVDDVRDLGIRVA-ARGS 128

Query: 381  GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
            GAGS+  + + I   DPL   LL ERFL+  R  +PD DID    RR EV R +  ++G 
Sbjct: 129  GAGSLVNHLIGIAHADPLEHGLLMERFLSKRRSVLPDIDIDVESARRIEVYRAILGRFGP 188

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            ERVA +    + + + A+RDVG AL +  + +DR+    P+  A      A+ +      
Sbjct: 189  ERVATVAMPETYRVRHAIRDVGAALSLDPADIDRIATAFPHIRARDA-RTAMDELPELAS 247

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
                        E+ + L+ L R  + H  G+++ D  L    P+       LP+ QF+ 
Sbjct: 248  VAAEREKYGTFWELVEGLDALPRGVAMHPCGVLLSDASLLSRTPVVPTSGESLPMAQFDK 307

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
            + +E  GL+K D LG++  + +  +L +     G   D+  IP  D  TY L+ +  TLG
Sbjct: 308  EDVEDLGLLKLDVLGVRMQSAMAHALSELDRATGEAPDIDAIPPGDERTYQLIRSTETLG 367

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPL 677
             FQ+ES G R  +  +QP    D++  +SL+RPGP+   +   +   ++G+  +   HP 
Sbjct: 368  CFQIESPGQRDLVGRLQPSTFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRYPHPD 427

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            + P L++T GV+++ EQV+ +   ++G    EAD +RR +     E   + +  F   A+
Sbjct: 428  LAPALEDTYGVVVFHEQVIDLVHTMTGCGRDEADRVRRGLSD--PESQGRIRFWFAQRAA 485

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            + G         +E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +  
Sbjct: 486  ERGYDAETVTRTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPG 545

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----------DNRIYYSLAAIKGVGT 847
               K +    DAR+  + I+P  VN      ++              +   L+ + G+  
Sbjct: 546  MYPK-RLLLADARRRGVPILPVDVNHSAPAHRIELVSENGPPAARWGVRLGLSDVHGMSE 604

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
                 I  A   +P+ SL DF  R      +R V E L   GALD FG +R  LL  L  
Sbjct: 605  AEGERIAAA---QPYTSLLDFWQRARP---SRPVAERLAQVGALDAFGANRRDLLLHLAE 658

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            + +  +    + T     +    +   +           + + R   E  VLG   S H 
Sbjct: 659  LHRMGRGAASHGT--QLPLSGGRRTAPAG------LPDLDETERLSAELGVLGMDASRHL 710

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            +  ++  LR++G+           G  + +A    + Q    R G R+ + T  + A   
Sbjct: 711  MGDHQEFLRELGVVSARRLREAPHGATVLVAGAKAATQTPPIRSGKRVVFTTLDDGAGLV 770

Query: 1028 EANFF 1032
            +  FF
Sbjct: 771  DLAFF 775


>gi|146339654|ref|YP_001204702.1| error-prone DNA polymerase [Bradyrhizobium sp. ORS278]
 gi|167016909|sp|A4YRD9|DNAE2_BRASO RecName: Full=Error-prone DNA polymerase
 gi|146192460|emb|CAL76465.1| Error-prone DNA polymerase [Bradyrhizobium sp. ORS278]
          Length = 1170

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 222/889 (24%), Positives = 374/889 (42%), Gaps = 74/889 (8%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +   P +  + V +++S L G       + + A     AI I D N L   +    +   
Sbjct: 1   MTPIP-YAEIGVTTNFSFLHGGSHPQAYVHQAAEYGLTAIGIADHNTLAGIVRAYSELSN 59

Query: 65  AGI----QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             +    + + G +L                     P I++       Y RL +L++R  
Sbjct: 60  DQLGYRPKLLYGARLVFTCG---------------TPDILVYPRDRAAYGRLCQLLTRGK 104

Query: 121 LLDQ----GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
                    K   R+    L +     L++L                       L   K 
Sbjct: 105 RGSDLDKVAKGDCRLAFEDLFDFIAGQLLVLMPPH---------RFDEDALGAILARLKD 155

Query: 177 LFGDRLYV-NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
              + +++     +RG DR R +++ +LA + ++PL+ATN+ L+   +     DVL  + 
Sbjct: 156 SPAEGVWLAGSLLYRGDDRRRLARLARLAASAKVPLIATNDVLYHHPQQRMLQDVLTCIR 215

Query: 236 HS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
              ++ S   R +   + +LK   EM  +F D PEA+  T+    R  F L       P 
Sbjct: 216 EKASIESIGRRLQANAERHLKPGHEMARLFRDHPEAIAETLRFTDRIVFSLDQLKYQYPD 275

Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                     K  +  L +   AG +                 R  L+ EL +IA + ++
Sbjct: 276 EPVPPG----KTAQGHLEDLTWAGAKTYFGD------KLDDRLRAVLNKELALIAELNYA 325

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            YFL V D +++A+   I    GRGS A S   Y L IT +DP +  LLFERF++ +R+ 
Sbjct: 326 HYFLTVHDIVRYARSEGIL-CQGRGSAANSAVCYVLGITSVDPTKIDLLFERFISKERLE 384

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            PD D+DF   RR+EV++YV ++YG  R A I T    + ++A+RDVG+AL +       
Sbjct: 385 PPDIDVDFEHSRREEVMQYVYHRYGRHRAAIIATVIHYRPRSAIRDVGKALGLTEDVTSV 444

Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           L   +       +S   +    R       +P + R +E++ +L    RH S H  G V+
Sbjct: 445 LADTVWGSWGDGLSDMQV----RQAGLDPHNPMIRRAVELASELITFPRHLSQHVGGYVL 500

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
               L   VP+      D    +++   ++   ++K D L L  LT ++KS D +A    
Sbjct: 501 TQDRLDSYVPIGNAAMDDRTFIEWDKDDVDALSMMKVDVLALGMLTCIRKSFDLIADHKG 560

Query: 595 KVDL--SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
           +  +   +   DD+E Y +L    +LG+FQ+ES      L  ++P    D++  V++ RP
Sbjct: 561 RRYVLSDIKSEDDNEVYQMLQRGESLGVFQVESRAQMNMLPRLKPRTFYDLVIEVAIVRP 620

Query: 653 GPIDNIVVYN--NRKNGKEKIVSIHP--------LIDPMLKETQGVIIYQEQVMQIAQLL 702
           GPI   +V+    R+N  EK+    P         +  +L +T GV ++QEQ M+IA   
Sbjct: 621 GPIQGDMVHPYLRRRNKLEKVTYPSPSPDHGPSDELYKVLHKTLGVPLFQEQAMRIAIEA 680

Query: 703 SGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
           + +S  EA+ LRRAM        +   +E+ +S     G     A + F+ +  F  YGF
Sbjct: 681 AKFSPEEANGLRRAMATFRNVGTIGSYEEKMVSNMIARGYDPAFAKSCFDQIKGFGSYGF 740

Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            +SHAA++A + Y ++W+K  +P  F  A +  +        +   DAR+  ++I    V
Sbjct: 741 PESHAASFAQLVYVSSWLKYFHPDAFCCALLNSQPMGFYAPAQIVGDARKNGVEIRDIDV 800

Query: 822 NTPCVDFKVGDN-----RIYYSLAAIKGVG-----TTTARHIMEA-SAD 859
           +    D  +         +      I G           R + EA   +
Sbjct: 801 SHSFADNTLEKTDGEYCAVRLGFRQIDGFRWIDRDEERIRKLSEAVRKE 849



 Score =  167 bits (423), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 60/187 (32%), Gaps = 15/187 (8%)

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               A  I+ A   +PF SLEDF        L +R L  L  A A    G  R   L ++ 
Sbjct: 903  DDWADRIIRARQRRPFTSLEDFAR---DTALPKRALLLLADADAFRSLGLDRRAALWAVR 959

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
             +                 +F             +             + + +     GH
Sbjct: 960  RLPDDV----------PLPLFEAAIAREQPDEGAQPLPEMPLPEHVVADYQTIRLSLKGH 1009

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P++  +      G+    +   T     IR A +V+ +Q+  + KG  + ++T  +    
Sbjct: 1010 PMEFLRRRFAAEGVLACRDVNDTNDRRRIRCAGVVLVRQRPGSAKG--VVFMTLEDETGI 1067

Query: 1027 YEANFFP 1033
                 +P
Sbjct: 1068 ANIVVWP 1074


>gi|256384031|gb|ACU78601.1| DNA polymerase III, alpha subunit subfamily, putative [Mycoplasma
            mycoides subsp. capri str. GM12]
 gi|256384863|gb|ACU79432.1| DNA polymerase III, alpha subunit subfamily, putative [Mycoplasma
            mycoides subsp. capri str. GM12]
 gi|296455849|gb|ADH22084.1| DNA polymerase III, alpha subunit subfamily, putative [synthetic
            Mycoplasma mycoides JCVI-syn1.0]
          Length = 987

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 275/1017 (27%), Positives = 467/1017 (45%), Gaps = 85/1017 (8%)

Query: 19   SYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDID 78
             Y  LE  ++++  ++ I  ++      ++T+ ++   EF +KA    I+PIIG  ++ +
Sbjct: 12   QYDFLESLITIDQYIEFIKKNKLNYAFYSETHTMYGVAEFFKKATDNNIKPIIGLTIEFE 71

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
                                +++     +GYQ ++  VS  +L D            ++E
Sbjct: 72   DS----------------TKLIIYAKNKKGYQ-ILNFVS-SFLNDGFN---HYDYE-IKE 109

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRES 198
               E L+       G I+   F                   +  Y               
Sbjct: 110  YILE-LVNNNVVVVGLINDLDFK----------SYLINKLNNDFY--------------- 143

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
                      L     N   +L   D + +++L A+  +  ++Q           +    
Sbjct: 144  ----DVKELNL---YFNQISYLDINDQKTYNILNAIKTNKTINQIQNINNYFYPDIDYLI 196

Query: 259  EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
            +  S+ +      E   ++                + + K  +         LR   +  
Sbjct: 197  KNYSLENIKKVISEINSKVDFNLFDS-------NQKHLVKYKNINNLSSYEYLRQVCLLS 249

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
            L+    Q  I      + Y  RL++EL +I +M FS YFLIV+D++ +AKKN+I VGPGR
Sbjct: 250  LKK--YQQKIKPNLDLKLYINRLNYELEIIKQMGFSDYFLIVSDYVNFAKKNDILVGPGR 307

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GS AGS+ +Y L ITDIDPL + LLFERFLNPDR ++PD D+DF  +RR+EV+ Y+  KY
Sbjct: 308  GSAAGSLISYLLRITDIDPLEYDLLFERFLNPDRSNLPDIDLDFQDNRREEVLEYLFEKY 367

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G   V  I T+ ++  K A RDV R   +    V+++ K++               +++ 
Sbjct: 368  GKYHVGMITTYQTIGYKMAWRDVCRVFNIDLLIVNKISKVLDQYTNSDFLEFI--KENKL 425

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
                  +     +     K+ GL R  STHAAGIV+ D  L +LVP+ +   + +  TQF
Sbjct: 426  LNDYFQNDLFKEIFITMHKIIGLPRQTSTHAAGIVLTDCDLRELVPI-KIGFNGINQTQF 484

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGT 617
            +M +++  GLIK D LGL+ LT +Q+        + +K+ L+ I  +D + + LL  K T
Sbjct: 485  DMNYLDALGLIKMDILGLRNLTTIQEIKHLIYLNQNLKISLNKIDLNDKKAFELLKNKQT 544

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
             GIFQLES GM   +  MQ D IE I    +LYRPGP + I +Y   K    K   I   
Sbjct: 545  SGIFQLESKGMSDLISKMQVDSIEQISIASALYRPGPQEMIPIYLENKKTN-KFKIIDKS 603

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            +  +LK T G+I+YQEQVMQ+   ++ +S ++AD++RRAM KK  + M   K  FI+ A 
Sbjct: 604  VYEILKPTYGIIVYQEQVMQMLNKVANFSYAKADIIRRAMSKKNNKVMQSMKLEFINSAI 663

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KN  S   A  I+  + KF++YGFNKSH+ +Y+ ISY  A+ K H+  EF  + +   + 
Sbjct: 664  KNNFSYNKANLIWNWIEKFSNYGFNKSHSISYSYISYWLAYFKAHFTTEFYTSLLDQNIG 723

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI--ME 855
            N  K +++ ++   + I++  PSV     ++++ + +IY  L  IK +G    + I   +
Sbjct: 724  NEIKTQQYIKELYDYKIKVNKPSVINSNFNYQIINKQIYMPLTCIKSIGYEVVKKINLAK 783

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
            +  +  +  + +F   +  +K+N  VL++L+ AGALD F Y++  ++++LD +   A   
Sbjct: 784  SENENMYLDIHNFILAMIKQKINVNVLQTLIKAGALDIFNYNKKTMIENLDLLISQANAY 843

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            ++                  +KI L  +      +    E+ + GF+   +P+   K   
Sbjct: 844  KQVNNI-----------LDDEKINLIIYDEYEDEILASFEKELYGFFIDQNPILKLK--- 889

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +           +   ++  ++ K +  +++ +VT  +   E E   F
Sbjct: 890  TNNFNLNLIDISKLEYNKVQVILGYILKIKEIKDKNNNKMAFVTVFDNTSELELTIF 946


>gi|196234154|ref|ZP_03132987.1| DNA-directed DNA polymerase [Chthoniobacter flavus Ellin428]
 gi|196221805|gb|EDY16342.1| DNA-directed DNA polymerase [Chthoniobacter flavus Ellin428]
          Length = 725

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 222/739 (30%), Positives = 364/739 (49%), Gaps = 53/739 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC--AAGI 67
           ++V L   S++S L GA     + ++ A    PA+A+ D + ++ A  F  K+    AG 
Sbjct: 4   AYVELHTRSAFSFLRGASLPEQLAERAAELNLPAVALCDRDGVYGAPRFYNKSKEIEAGK 63

Query: 68  ---------QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
                    + I+G +L ++                    + +LV +  GYQ L  L+++
Sbjct: 64  EGEEKKSKPRLILGAELTLEDGAV----------------LPVLVESRTGYQNLCRLITQ 107

Query: 119 MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             L      +  +  S L E  TEGL+ LTG   GPI R    +    A +R+   ++ F
Sbjct: 108 AKLRGTKTDAP-VYWSELAEF-TEGLVALTGDEEGPIARCLERDDLAGARERVTRLRRAF 165

Query: 179 GD-RLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
           GD  ++V +QRH    +  R  Q+  LA    LPL+ATN   +   E     DV     H
Sbjct: 166 GDKNVFVEVQRHLQRGEELRIRQLADLAGAERLPLLATNGVQYSIPEQRGVLDVFTCARH 225

Query: 237 STVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
            T +    R      + YLK+ ++M  +F+DLPEA++NTV +A R  F L       P F
Sbjct: 226 HTHLDAAGRLLSANGERYLKSAAQMAKLFTDLPEAIDNTVALAERLHFTLADLGYKFPTF 285

Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
              E + +       LR + +AG                +   +++D EL +I ++ F G
Sbjct: 286 PVPEGESM----ATYLRKQVLAGAR-------ARCRNFNERTLRQIDHELGLIEQLGFCG 334

Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
           YFL + D +++AKK++I +  GRGS A SV  ++L IT  DP+ ++LLFERFL   R + 
Sbjct: 335 YFLCIWDLVEFAKKSDIMI-QGRGSAANSVVCFSLGITACDPIEYNLLFERFLAEGRNTW 393

Query: 416 PDFDIDFCQ-DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           PD D+D    DRR+ VI+ V  ++G    A      + + ++A+R++G+AL      + R
Sbjct: 394 PDIDLDLPSGDRRESVIQEVYRRFGKHGAAMTANVITFRGRSAMREIGKALNFSLESIGR 453

Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
              L  N    P +L  +A  ++        P  +    + Q + GL RH   H+ G++I
Sbjct: 454 FSALFANGD-FPHTLDLLAQLTQ-AGIPKDHPRAEAAAYLYQMIRGLPRHLGQHSGGMII 511

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
               LS  +P+         V Q++    E  G+IK D LGL  +++LQ+++    QRG 
Sbjct: 512 CQNQLSSFIPLENASMPGRVVAQWDKDDCEDLGIIKVDLLGLGMMSVLQETIQLSEQRGH 571

Query: 595 KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
           KV+L  +P DD ETY ++    T+G+FQ+ES      L  ++P C  D++  V++ RPGP
Sbjct: 572 KVELYEVPADDPETYEMIRAADTIGLFQIESRAQMATLPRLKPKCFYDLVVEVAIVRPGP 631

Query: 655 IDN--IVVYNNRKNGKEKIVSIHPL----IDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
           I    +  Y  R+  +E+ V +H      + P L+ T GV ++QEQ+++++  L+ ++ S
Sbjct: 632 IQGGLMHPYLKRRCNQEEHVYVHKDVEEILRPTLERTLGVPLFQEQMLKMSMDLADFNGS 691

Query: 709 EADVLRRAMGKKIKEEMDK 727
           EA+ LRRA+      + D+
Sbjct: 692 EAEELRRALSFHRSHDRDE 710


>gi|149010467|ref|ZP_01831838.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP19-BS75]
 gi|147764948|gb|EDK71877.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP19-BS75]
          Length = 957

 Score =  373 bits (957), Expect = e-100,   Method: Composition-based stats.
 Identities = 274/933 (29%), Positives = 448/933 (48%), Gaps = 88/933 (9%)

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
             L  ++ GYQ+L++L +     ++         S L +   E + ++            +
Sbjct: 3    FLALSSVGYQQLMKLSTAKMQGEK-------TWSVLSQYL-EDIAVIVP----------Y 44

Query: 161  FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFL 220
            F+  +  E          G   Y+ +                LA     P++        
Sbjct: 45   FDRVESLE---------LGCDYYIGVYPE------------TLASEFHHPILPLYRVNAF 83

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
               D E   VL A+  + +  ++   R   D ++   S         P+AL+N  ++   
Sbjct: 84   ESRDREVLQVLTAIKEN-LPLREVPLRSRQDVFISASSLEKLFQESFPQALDNLEKLISG 142

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             S+ L     +          +  +    ELR +A  G         + KG  +++Y+ R
Sbjct: 143  ISYDLDTSLKLPR-------FNPARPAVEELRERAELG--------LVQKGLTSKEYQDR 187

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
            LD EL+VI  M F  YFL+V D +++ + N   +G GRGS  GS+ +YAL IT IDP+  
Sbjct: 188  LDQELSVIHDMGFDDYFLVVWDLLRFGRSNGYYMGMGRGSAVGSLVSYALDITGIDPVEK 247

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
            +L+FERFLN +R +MPD DID     R + IRYV NKYG +  AQI+TF +  AK ALRD
Sbjct: 248  NLIFERFLNRERYTMPDIDIDIPDIYRPDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRD 307

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            V +   +P  ++  + K I           A   + +FR+   +     +  EI+ K+EG
Sbjct: 308  VLKRFGVPEYELSAITKKISFRDN---LKSAYEGNLQFRQQINSKLEYQKAFEIACKIEG 364

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
              R  S HAAG+VI D+ L+  +P+      ++P+TQ++   +E +GL+K DFLGL+ LT
Sbjct: 365  YPRQTSVHAAGVVISDQDLTNYIPLKYG--DEIPLTQYDAHGVEASGLLKMDFLGLRNLT 422

Query: 581  LLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
             +QK  + LA+       +  I  +D ET  L  +  T GIFQ E  G  + L+ +QP C
Sbjct: 423  FVQKMQELLAETEGIHLKIEEIDLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVC 482

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
             ED++A  SL RPG  D I  +  RK+G+E++  +   ++ +L  T G+++YQEQVMQ+A
Sbjct: 483  FEDVVATTSLNRPGASDYINNFVARKHGQEEVTVLDSALEDILAPTYGIMLYQEQVMQVA 542

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            Q  +G+SL +AD+LRRAMGKK    M + +  FI G+ + G +   A  +F+++ KFA Y
Sbjct: 543  QRFAGFSLGKADILRRAMGKKDASAMHEMRASFIQGSIEAGHTAEKAEQVFDVMEKFAGY 602

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            GFN+SHA AY+ +++Q A+ KTHYP  F    +            +  DA +   ++ P 
Sbjct: 603  GFNRSHAYAYSALAFQLAYFKTHYPAIFYQIMLNSANS------DYLIDALEAGFEVAPL 656

Query: 820  SVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            S+NT     K+ +  IY  L +IKGV    A  I+E   ++P+ ++EDF +++    L  
Sbjct: 657  SINTIPYHDKIANKAIYLGLKSIKGVSNDLALWIIE---NRPYSNIEDFIAKLPENYLKL 713

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
             +LE LV  G  D F  +R ++  +L N+ ++ + +         ++F     ++ +   
Sbjct: 714  PLLEPLVKVGLFDSFEKNRQKVFNNLANLFEFVKEL--------GSLFGDAIYSWQES-- 763

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
                       +F  EQ +LG   S HPL      +    I            +   +  
Sbjct: 764  ----EDWTEQEKFYMEQELLGIGVSKHPLQA----IASKAIYPITPIGNLSENSYAIILV 815

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             V   +  +T+KG  + ++   +  K+ +   F
Sbjct: 816  EVQKIKVIRTKKGENMAFLQADDSKKKLDVTLF 848


>gi|313665521|ref|YP_004047392.1| DNA polymerase III DnaE [Mycoplasma leachii PG50]
 gi|312949998|gb|ADR24594.1| putative DNA polymerase III DnaE [Mycoplasma leachii PG50]
          Length = 987

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 275/1017 (27%), Positives = 466/1017 (45%), Gaps = 85/1017 (8%)

Query: 19   SYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDID 78
             Y  LE  ++++  ++ I  ++      ++T+ ++   EF +K     I+PIIG  ++ +
Sbjct: 12   QYDFLESLITIDQYIEFIKKNKLSYAFYSETHTMYGVAEFFKKTTDNNIKPIIGLTIEFE 71

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
                                 ++     +GYQ ++  VS  +L D           ++ E
Sbjct: 72   DSTKF----------------IIYAKNKKGYQ-ILNFVS-SFLNDGFNHYDYEIKEYILE 113

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRES 198
            +    ++++     G I    F                   +  Y               
Sbjct: 114  LVNNNVVVI-----GLISDLDFKTH----------LINKLNNDFY--------------- 143

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
                      L     N   +L   D +  ++L A+  +  + Q        ++Y    +
Sbjct: 144  ----DVKELNL---YFNQISYLDINDQKTFNILNAIKTNKTIKQIQ----NINNYFYPDN 192

Query: 259  EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
            + +S    +    +   EI  +  F L        + + K  +         L    +  
Sbjct: 193  DYLSKNYSIENIKKVINEINLKVDFNLFDS---NKKHLVKYKNINNLSSFEYLCQICLLS 249

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
            L+    Q  I      + Y  RL++EL VI +M FS YFLIV+D++ +AKKN+I VGPGR
Sbjct: 250  LKK--YQQKIKPNLDLKLYINRLNYELEVIKQMGFSDYFLIVSDYVNFAKKNDILVGPGR 307

Query: 379  GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
            GS AGS+ +Y L ITDIDPL + LLFERFLNPDR ++PD D+DF  +RR+EV+ Y+  KY
Sbjct: 308  GSAAGSLISYLLRITDIDPLEYDLLFERFLNPDRSNLPDIDLDFQDNRREEVLEYLFEKY 367

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G   V  I T+ ++  K A RD+ R   +    V+++ K +               +++ 
Sbjct: 368  GKNHVGMITTYQTIGYKMAWRDLCRVFNIDLLIVNKISKALDQYTNSDFLEFI--KENKL 425

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
                  +     +     K+ GL R  STHAAGIV+ D  L +LVP+ +   + +   QF
Sbjct: 426  LNDYFQNNVFKEIFITMHKIVGLPRQTSTHAAGIVLTDCDLRELVPI-KIGFNGINQIQF 484

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHETYHLLTTKGT 617
            +M +++  GLIK D LGL+ LT +Q+        + +K+ L+ IP +D + + LL  K T
Sbjct: 485  DMNYLDDLGLIKMDILGLRNLTTIQEIKHLIYLNQNLKISLNKIPLNDKKAFELLKNKQT 544

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
             GIFQLES GM   +  MQ D IE I    +LYRPGP + I  Y   K    K   I   
Sbjct: 545  SGIFQLESKGMTDLISKMQVDSIEQISIASALYRPGPQEMIPTYLGNKKTN-KFKIIDQS 603

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            +  +LK T G+IIYQEQVMQ+   ++ +S ++AD++RRAM KK  + M   K  FI+ A 
Sbjct: 604  VFEILKPTYGIIIYQEQVMQMLNKVANFSYAKADIIRRAMSKKNNKVMQSMKLEFINSAV 663

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            KN  S   A  I+  + KF++YGFNKSH+ +Y+ ISY  A+ K H+  EF  + +   + 
Sbjct: 664  KNNFSYNKANLIWNWIEKFSNYGFNKSHSISYSYISYWLAYFKAHFTTEFYTSLLDQNIG 723

Query: 798  NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI--ME 855
            N  K +++ ++   + I++   SV     ++++ + +IY  L  IK +G    + I   +
Sbjct: 724  NEIKTQQYIKELYDYKIKVNKSSVINANFNYQIINKQIYMPLTCIKSIGYEVVKKINLAK 783

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
            +  +  +  + +F   +  +K+N  VL++L+ AGALD F Y++  ++++LD +   A   
Sbjct: 784  SENENMYLDIHNFILAIVKQKININVLQTLIKAGALDIFNYNKKTMIENLDLLISQANAY 843

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            ++                  +KI L  +      +    E+ + GF+   +P+   K   
Sbjct: 844  KQVNNI-----------LDDEKINLIIYDEYEDEILASFEKELYGFFIEQNPILKLK--- 889

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +           +   ++  ++ K +  +++ +VT  +   E E   F
Sbjct: 890  TSNFDLNLIDISKLEYNKVQVILGYILKIKEIKDKNNNKMAFVTIFDNTSELELTIF 946


>gi|303262214|ref|ZP_07348158.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
            SP14-BS292]
 gi|302636537|gb|EFL67028.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae
            SP14-BS292]
          Length = 968

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 275/926 (29%), Positives = 450/926 (48%), Gaps = 88/926 (9%)

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            GYQ+L++L +     ++         S L +   E + ++            +F+  +  
Sbjct: 21   GYQQLMKLSTAKMQGEK-------TWSVLSQYL-EDIAVIVP----------YFDRVESL 62

Query: 168  EKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            E          G   Y+ +                LA     P++           D E 
Sbjct: 63   E---------LGCDYYIGVYPE------------TLASEFHHPILPLYRVNAFESRDREV 101

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
              VL A+  + +  ++   R   D ++   S         P+AL+N  ++    S+ L  
Sbjct: 102  LQVLTAIKEN-LPLREVPLRSRQDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDT 160

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
               +          +  +    ELR +A  G         + KG  +++Y+ RLD EL+V
Sbjct: 161  SLKLPR-------FNPARPAVEELRERAELG--------LVQKGLTSKEYQDRLDQELSV 205

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I  M F  YFL+V D +++ + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERF
Sbjct: 206  IHDMGFDDYFLVVWDLLRFGRSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERF 265

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LN +R +MPD DID     R + IRYV NKYG +  AQI+TF +  AK ALRDV +   +
Sbjct: 266  LNRERYTMPDIDIDIPDIYRPDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGV 325

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
            P  ++  + K I           A   + +FR+   +     +  EI+ K+EG  R  S 
Sbjct: 326  PEYELSAITKKISFRDN---LKSAYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSV 382

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            HAAG+VI D+ L+  +P+      ++P+TQ++   +E +GL+K DFLGL+ LT +QK  +
Sbjct: 383  HAAGVVISDQDLTNYIPLKYG--DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQE 440

Query: 588  FLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             LA+  G+ + +  I  +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A 
Sbjct: 441  LLAEIEGIHLKIEEIDLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVAT 500

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
             SL RPG  D I  +  RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+S
Sbjct: 501  TSLNRPGASDYINNFVARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFS 560

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L +AD+LRRAMGKK    M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA
Sbjct: 561  LGKADILRRAMGKKDASAMHEMRASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHA 620

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
             AY+ +++Q A+ KTHYP  F    +            +  DA +   ++ P S+NT   
Sbjct: 621  YAYSALAFQLAYFKTHYPAIFYQIMLNSANS------DYLIDALEAGFEVAPLSINTIPY 674

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
              K+ +  IY  L +IKGV    A  I+E   ++P+ ++EDF +++    L   +LE LV
Sbjct: 675  HDKIANKAIYLGLKSIKGVSNDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLV 731

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
              G  D F  +R ++  +L N+ ++ + +         ++F     ++ +          
Sbjct: 732  KVGLFDSFEKNRQKVFNNLANLFEFVKEL--------GSLFGDAIYSWQES------EDW 777

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                +F  EQ +LG   S HPL      +    I            +   +   V   + 
Sbjct: 778  TEQEKFYMEQELLGIGVSKHPLQA----IASKAIYPITPIGNLSENSYAIILVEVQKIKV 833

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +T+KG  + ++   +  K+ +   F
Sbjct: 834  IRTKKGENMAFLQADDSKKKLDVTLF 859


>gi|303269801|ref|ZP_07355549.1| DNA polymerase III DnaE [Streptococcus pneumoniae BS458]
 gi|302640661|gb|EFL71060.1| DNA polymerase III DnaE [Streptococcus pneumoniae BS458]
          Length = 957

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 275/926 (29%), Positives = 450/926 (48%), Gaps = 88/926 (9%)

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            GYQ+L++L +     ++         S L +   E + ++            +F+  +  
Sbjct: 10   GYQQLMKLSTAKMQGEK-------TWSVLSQYL-EDIAVIVP----------YFDRVESL 51

Query: 168  EKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            E          G   Y+ +                LA     P++           D E 
Sbjct: 52   E---------LGCDYYIGVYPE------------TLASEFHHPILPLYRVNAFESRDREV 90

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
              VL A+  + +  ++   R   D ++   S         P+AL+N  ++    S+ L  
Sbjct: 91   LQVLTAIKEN-LPLREVPLRSRQDVFISASSLEKLFQERFPQALDNLEKLISGISYDLDT 149

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
               +          +  +    ELR +A  G         + KG  +++Y+ RLD EL+V
Sbjct: 150  SLKLPR-------FNPARPAVEELRERAELG--------LVQKGLTSKEYQDRLDQELSV 194

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            I  M F  YFL+V D +++ + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERF
Sbjct: 195  IHDMGFDDYFLVVWDLLRFGRSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERF 254

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            LN +R +MPD DID     R + IRYV NKYG +  AQI+TF +  AK ALRDV +   +
Sbjct: 255  LNRERYTMPDIDIDIPDIYRPDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGV 314

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
            P  ++  + K I           A   + +FR+   +     +  EI+ K+EG  R  S 
Sbjct: 315  PEYELSAITKKISFRDN---LKSAYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSV 371

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            HAAG+VI D+ L+  +P+      ++P+TQ++   +E +GL+K DFLGL+ LT +QK  +
Sbjct: 372  HAAGVVISDQDLTNYIPLKYG--DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQE 429

Query: 588  FLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
             LA+  G+ + +  I  +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A 
Sbjct: 430  LLAEIEGIHLKIEEIDLEDKETLALFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVAT 489

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
             SL RPG  D I  +  RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+S
Sbjct: 490  TSLNRPGASDYINNFVARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFS 549

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
            L +AD+LRRAMGKK    M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA
Sbjct: 550  LGKADILRRAMGKKDASAMHEMRASFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHA 609

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV 826
             AY+ +++Q A+ KTHYP  F    +            +  DA +   ++ P S+NT   
Sbjct: 610  YAYSALAFQLAYFKTHYPAIFYQIMLNSANS------DYLIDALEAGFEVAPLSINTIPY 663

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
              K+ +  IY  L +IKGV    A  I+E   ++P+ ++EDF +++    L   +LE LV
Sbjct: 664  HDKIANKAIYLGLKSIKGVSNDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLV 720

Query: 887  FAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
              G  D F  +R ++  +L N+ ++ + +         ++F     ++ +          
Sbjct: 721  KVGLFDSFEKNRQKVFNNLANLFEFVKEL--------GSLFGDAIYSWQES------EDW 766

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                +F  EQ +LG   S HPL      +    I            +   +   V   + 
Sbjct: 767  TEQEKFYMEQELLGIGVSKHPLQA----IASKAIYPITPIGNLSENSYAIILVEVQKIKV 822

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +T+KG  + ++   +  K+ +   F
Sbjct: 823  IRTKKGENMAFLQADDSKKKLDVTLF 848


>gi|320532668|ref|ZP_08033463.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 171
            str. F0337]
 gi|320135114|gb|EFW27267.1| DNA polymerase III, alpha subunit [Actinomyces sp. oral taxon 171
            str. F0337]
          Length = 806

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 217/774 (28%), Positives = 342/774 (44%), Gaps = 82/774 (10%)

Query: 319  LEVRLAQGAIAKGYHAQDYRQRL---DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
            +     QGA  +    Q++ +     + EL VI  + F GYFLIV   +++  ++ I   
Sbjct: 1    MRELTFQGATRRYGTPQEHPRAWAVLNHELEVIESLGFPGYFLIVHAIVEFCAQSGIL-C 59

Query: 376  PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
             GRGS A S   YAL IT +D +R  +LFERFL+P R   PD D+D    RR+EVI++V 
Sbjct: 60   QGRGSAANSAVCYALGITAVDAVRHQMLFERFLSPGRAGYPDIDLDIEACRREEVIQHVY 119

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
            ++YG ER AQ+    S + ++A+RD  RAL  P    D   K +    +           
Sbjct: 120  SRYGRERAAQVANVISYRPRSAVRDAARALGHPAGVQDAWAKQMERWTSVRPGGLT---- 175

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
                     D   + +L+I++KL  L RH   H  G+V+  RP++++ P+      +  V
Sbjct: 176  ------GQGDDVPEPVLDIAEKLLRLPRHLGVHPGGMVLCGRPVTEVCPVRWAAMDNRSV 229

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV------------------KVD 597
             Q++     +AGL+KFD LGL  LT L+ +   LA+R                       
Sbjct: 230  LQWDKDDCAEAGLVKFDLLGLGALTALRLAFTTLAERRQVVPDAVTEGELRTSQSGRPWG 289

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  +P +D   Y LLT   T+G+FQ+ES      L   +P    DI+  V+L RPGPI  
Sbjct: 290  LHTLPEEDPAVYRLLTAADTVGVFQVESRAQMATLPRFRPRTFYDIVVEVALIRPGPIQG 349

Query: 658  I--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
                 Y  R+  +E++  +H  + P L +T GV ++QEQ+MQIA   +G+S +EAD LR+
Sbjct: 350  DAVNPYIRRRLKREEVTYLHDSLKPALTKTLGVPLFQEQLMQIAVDAAGFSPAEADTLRQ 409

Query: 716  AM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AM  K+  E MD  +++ I+G    GI    A  I+  L  FA++GF +SHA ++A + Y
Sbjct: 410  AMGAKRSIERMDALRDKLIAGMMSRGIDSPTAEKIYSKLRSFAEFGFPESHAFSFAYLVY 469

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN- 833
             +AW+K   P +F A  +  +       +    DA +  ++++P  +N       V    
Sbjct: 470  ASAWLKVRKPEDFYAGVLAAQPMGFWSPQSLVADALRHGVRVLPADINRSLAQATVEQWE 529

Query: 834  ------------------------------RIYYSLAAIKGVGTTTARHIM-EASADKPF 862
                                           +   LA +KG+G   A+ I+ E  A  P+
Sbjct: 530  DHQDADRSDQWGPLRPHPAAPSALDVHDDLAVRLGLAPLKGLGERAAQAIVTERRAHGPY 589

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
              L D   RV    L+R  LE+L  +GALD  G  R Q L +   +              
Sbjct: 590  RDLADLARRVS---LSRSRLEALAVSGALDSLGTERRQALWAAGVLSDEHGRRRGTSHQG 646

Query: 923  -----HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                    +     G  +               R   +  + G    G PL + +P L  
Sbjct: 647  RGAWCQPTLPGTAVGARA-----PTLPAMTDRERQGADLSLTGVSTHGSPLRLLRPALAA 701

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             G+    +      G+ +R+A +V  +Q+  T  G  + ++   +       + 
Sbjct: 702  DGVLSAADLAGQEHGSRVRVAGVVTHRQRPHTASG--MIFLNLEDETGLLNVSC 753


>gi|218193695|gb|EEC76122.1| hypothetical protein OsI_13390 [Oryza sativa Indica Group]
          Length = 3986

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 210/562 (37%), Positives = 309/562 (54%), Gaps = 23/562 (4%)

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              +  A+  +    E    +  V  ++E++QKLEG+ R+   HA G++I    L+   P+
Sbjct: 2869 DKNNYALELEPMLYERVRKEEDVKTVIEMAQKLEGMTRNIGMHAGGVLIAPGKLTDFCPL 2928

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV---KVDLSLIP 602
            Y+   S+  V+Q++   +E  GL+KFDFLGL TLT+L+ + +F+ +R           IP
Sbjct: 2929 YQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMKRHKGQENFAFENIP 2988

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD  TY L +   T  +FQ ES GM+  L+  +P  +ED+IAL +LYRPGP+D I  + 
Sbjct: 2989 LDDAPTYRLFSEGKTEAVFQFESRGMQGMLKEARPSRLEDLIALNALYRPGPMDLIPTFV 3048

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            NRK+GKE +   HPL++P+L ET G+++YQEQVMQ AQ+L GYSL  AD+LRRAMGKK  
Sbjct: 3049 NRKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLGGADMLRRAMGKKKA 3108

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
            EEM + +E F  GA++ GI +  A  +F+L+ KFA YGFNKSHAAAY++++Y T W+K H
Sbjct: 3109 EEMAEHREIFRKGAAEKGIGQDKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKVH 3168

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAA 841
            Y  EF  A+MT+EMD+ +K+K   +DA +  +   PP VN     F+ V D  I Y L A
Sbjct: 3169 YTAEFFCANMTVEMDDTDKLKVLYEDAMKMGLTFEPPDVNRGMYRFEPVTDKVIRYGLGA 3228

Query: 842  IKGVGTTTARHIMEASAD----------KPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            +KG G      I+ A              PF SL DFC+RVD  +LN+R LE+L+ AGA 
Sbjct: 3229 VKGTGQQAIEAIIAAREGRGVGPRGETKGPFASLFDFCARVDRTRLNKRTLEALIKAGAF 3288

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF----AHEKGTFSDKITLEKFSVEN 947
            D    +R  L+ S+D    +A  +  N       +F        G+ +    L +     
Sbjct: 3289 DAIEMNRASLVASIDRAFDFANSLIAN--ANQGGLFDMMGDDSHGSSTQDPALVEMLPWG 3346

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
               R   E+  +GFY SGH  D  +  +R+      EE   +       +A +V   +  
Sbjct: 3347 VKERLTQEKTAVGFYLSGHLFDEVEKEVRRFIRTPIEELADSREPQ--IMAGIVSDFRVI 3404

Query: 1008 KTRKGSRIGWVTFSEPAKEYEA 1029
              ++G R+      + +   EA
Sbjct: 3405 NGQRG-RLALFKLDDKSAMIEA 3425



 Score =  154 bits (390), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 69/117 (58%), Gaps = 10/117 (8%)

Query: 7    KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            ++P FVHL++H+ +S+++G   ++ +    + D QPA+AITD +NLF A++F ++A   G
Sbjct: 2753 RAPMFVHLRLHTEFSVVDGTARIDEVAKAASKDGQPALAITDLHNLFGAIKFYKEARGKG 2812

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
            ++P++G ++ I+ +          T       I+LL    +GY  L EL++R +  +
Sbjct: 2813 VKPVLGAEVSIEPE----------TAGNPPGRILLLAQGRQGYLNLCELLARAWTRN 2859


>gi|110803674|ref|YP_697668.1| DNA polymerase III, subunit alpha (dnaE)-like protein [Clostridium
           perfringens SM101]
 gi|110684175|gb|ABG87545.1| DNA polymerase III, subunit alpha (dnaE)-like protein [Clostridium
           perfringens SM101]
          Length = 416

 Score =  371 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 139/418 (33%), Positives = 222/418 (53%), Gaps = 27/418 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +HS YSLL+G+  +  ++ +       +IA+TD   ++  ++  ++A A GI+PI
Sbjct: 6   FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +GC++ +  +     +N           +VLLV   +GY+ L+++VS   + +      R
Sbjct: 66  LGCEVYVVPKSRKIKSNDEDN---KTYHLVLLVKNEKGYENLMKIVSVASI-EGFYYKPR 121

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I   +L+E  +EG+I L+    G + +A    +   A +    ++  F D  Y+ LQ H 
Sbjct: 122 IDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAATFYRDTFKDGFYLELQNHG 180

Query: 191 GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
             ++ + ++V +QLA    +PLVATN+  ++++ED +AHD+LM +     V   +R R  
Sbjct: 181 IEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRYP 240

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
           +   YLK+  EM  +F  +PEALENT++IA  C+F  + H   LP+F   E      E  
Sbjct: 241 SDQFYLKSPEEMWDMFDYIPEALENTLKIAEECNFDYEFHVSKLPKFPLPEGV----EPF 296

Query: 309 NELRNKAVAG-------------LEVRLAQGAIAKGYHAQDYR---QRLDFELNVIARMK 352
             LR     G              E+         G + +  +   +RL++EL VI +M 
Sbjct: 297 EYLRKTCFDGLIDRLEELKPLKEKEIYDIDKVYEIGENNEKVKEDIERLEYELGVIKQMG 356

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           +  YFLIV DFI++A  N IP GPGRGS AG++ AY L IT IDP+++SLLFER L  
Sbjct: 357 YVDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERKLRC 414


>gi|86131543|ref|ZP_01050141.1| DNA polymerase III alpha subunit [Dokdonia donghaensis MED134]
 gi|85817988|gb|EAQ39156.1| DNA polymerase III alpha subunit [Dokdonia donghaensis MED134]
          Length = 1008

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 235/1034 (22%), Positives = 413/1034 (39%), Gaps = 107/1034 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  HS YSL  G +S   ++D  A       A+TD NN    L F + A   GI+PI+G 
Sbjct: 3    LNNHSFYSLRYGTISEVELVDLAAKQGLTCFALTDINNTSGCLSFIKNAQEKGIKPIVGV 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-RMYLLDQGKQSVRIC 132
                                      + L     G+  +   +S  ++          I 
Sbjct: 63   DF----------------RNGNHQCYITLAKNNNGFLEINNFLSHHLHHKTSFPDHSPIF 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
               +                               E  L   K  F D  Y+ +  H+  
Sbjct: 107  KDVITIYP--------------------------FENVLELEKTTFSDNEYIGIT-HKNL 139

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
            ++ R S + +L +     LV  +   F  + D+  H +L A+  + ++S   +       
Sbjct: 140  NKLRFSPLSKLTHK----LVMLHTVSFRDKRDFNTHRLLRAIDKNMLLSMLPKKEEGHPE 195

Query: 253  YLKNRSEMVS-IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            +    ++ +   FS  P  L N   I + CS           + +       +++   +L
Sbjct: 196  HTFIEAKDLRLQFSQYPHLLSNAEHILKSCSIYFNFKKGKPSQNLTTLLGSEERDY-KKL 254

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
                  GL  R               ++RL  EL++I + K+  +FLI    I++A+  +
Sbjct: 255  VALCKKGLPERYKDN------ITYAVKRRLVKELSLIRQQKYVAFFLINWKIIEYARSKD 308

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
                 GRGSGA S+ AY L ITD+DP+   L FERF+N  R + PDFDIDF    R++V 
Sbjct: 309  -YFYVGRGSGANSIVAYLLRITDVDPIELDLYFERFMNLYRATPPDFDIDFSTWDREDVT 367

Query: 432  RYVQNKY-GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            RY+  ++    +VA + ++ + +   A+R++G+   +P  ++D+L K   N         
Sbjct: 368  RYIFEEFGSKAQVALLGSYVTFKHSGAVRELGKVFGLPKFEIDKLSKGRYNSS------- 420

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                          D     +++ +Q L G   + S HAAGI+I   P            
Sbjct: 421  ------------QLDNIKKTIIKYAQILHGKPNYTSIHAAGILISQHPTHYFSATNLPP- 467

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP-----FDD 605
               P  QF+M   E  GL KFD LG + L  ++ ++  +      + L  I      F D
Sbjct: 468  KGFPTVQFDMHIAEDVGLYKFDILGQRGLGKIKDAIAIIKDNNPGITLPDIHNARQFFTD 527

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--- 662
             +   +++    +G F +ES  MR  L  +  D    ++A  S+ RPG   + ++     
Sbjct: 528  QKINQMISNADCIGCFYVESPAMRMLLRKLSVDNYLTLVAASSIIRPGVSKSGMMREYIL 587

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
              K+ K      HP++  ++ +T GV++YQE V+++A   +G  L EADVLRR M  K +
Sbjct: 588  RHKDPKRAKQKGHPVLLDIMPDTYGVMVYQEDVIKVAHHYAGLDLGEADVLRRGMSGKYR 647

Query: 723  EEMDKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
               +     E+F +     G    +   I+  +  FA Y F K H+A+YAV SYQ+ ++K
Sbjct: 648  SRQEFLMVKEKFEANCLARGEKIEVINEIWRQIESFAGYAFAKGHSASYAVESYQSLYLK 707

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             ++P+E++ A++        + + + Q+A++    I PP +N   +   +  N IY    
Sbjct: 708  CYFPLEYMVATVN-NGGGFYRTETYLQEAKKKGAIIHPPCINKSQIKTIIKGNNIYLGFQ 766

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
             ++ +       I+    +  F SL +F  RV    ++   L+ L+   A      ++ Q
Sbjct: 767  HLQSLEKKNIVAIINERHNGLFSSLHNFIDRVP---MSLEQLDLLIRIEAFKSLNINQRQ 823

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            LL        + +     +    + +F        +   L +F + N     +    +L 
Sbjct: 824  LLWE-----AHYKNNSSPKVKNQKELF----KVSINSFKLPEFYIPNFEKAMDQ-LEILS 873

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            F     P  + K            E +       I +   +++ +  +T  G  + + TF
Sbjct: 874  FSLYD-PFILLKN---PTTNTLLAEDLKQYINKKIEIFGYLITAKTTRTTNGKHMCFGTF 929

Query: 1021 SEPAKE-YEANFFP 1033
             +      +   FP
Sbjct: 930  LDRKGNWLDTVHFP 943


>gi|300932918|ref|ZP_07148174.1| error-prone DNA polymerase [Corynebacterium resistens DSM 45100]
          Length = 1277

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 253/1078 (23%), Positives = 420/1078 (38%), Gaps = 194/1078 (17%)

Query: 68   QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            + + G +L +   D                 + +L    EGY+RL +L++   + D+ K 
Sbjct: 218  RTVFGAELSLAEGDG--------------HPLAILCRRQEGYRRLSQLITEAKMADRDKD 263

Query: 128  SVRIC-LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
            +V    L  + E   +  ++L       ID  +          R     +LFG +   + 
Sbjct: 264  TVNYPPLETIAERAGDQWLIL-------IDHHWLN--------RADELVRLFGSENCVIQ 308

Query: 186  LQRH-RGYDRYRESQVVQLAYTH-ELPLVATNNSLFLSEEDYEAHDVLMAVAHST-VVSQ 242
             Q      D     Q+ + A  H  L  + +  +            V  A+     + + 
Sbjct: 309  YQLTMDPADAEWNEQLRRYAEHHPGLQEIVSAVATCAQPSSARLAGVKAALHEQRDLHAA 368

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPE---ALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +     T   +L++R EM+ +  D      A++NTV +A +C+F L + AP LPR+    
Sbjct: 369  EPTTHPTGGSWLRSRDEMMQLAGDCDWLHAAIDNTVTLAEQCAFTLNLIAPNLPRYPVPT 428

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ------------------------ 335
                   E + L+     G   R  +    +   A+                        
Sbjct: 429  G----HTEMSWLKALVEKGGAERYGRRPKKEECSAETNQQAGAVGLATGSAARKANTAAN 484

Query: 336  -DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
                + +D EL +I ++ F GYFLIV D + +   N+I    GRGS A S   +AL IT 
Sbjct: 485  AKAWETIDRELGIIEQLGFPGYFLIVYDIVNFCHTNDI-FCQGRGSAANSAVCFALGITT 543

Query: 395  IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
            +D +   LLFERFL+P+R   PD D+D    RR+E I+YV  +YG +  AQ+    + + 
Sbjct: 544  VDAVAAGLLFERFLSPERDGPPDIDLDIESGRREEAIQYVYQRYGRDNAAQVANVITYRR 603

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K ALRD  RAL     QVD   +              I +                L  +
Sbjct: 604  KGALRDAARALGYAPGQVDAWTRG-------------IEEPPEL------------LQHV 638

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            + +L    RH   H+ G+VI DRP++ +VP       +  V Q++       GL+KFD L
Sbjct: 639  ADQLRDHPRHLGIHSGGMVICDRPIADVVPTEWARMENRSVVQWDKDDCAAVGLVKFDLL 698

Query: 575  GLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            GL  L  +  ++      RG +V+L  +   + E Y +L     +G+FQ+ES      L 
Sbjct: 699  GLGMLEAIHHAVDQVEKHRGRRVELWRLDPVETEVYAMLAKADAIGVFQVESRAQMNTLP 758

Query: 634  GMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
             ++P    D++  V+L RPGPI   ++  +  R+NG E +   HP ++P L  T GV ++
Sbjct: 759  RLKPRTFYDLVVQVALIRPGPIQGGSVHPFIRRRNGLEPVTFDHPSLEPALTRTLGVPLF 818

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA--SKNGISKTIAVNI 749
            QEQ+MQ+    +G++ +EAD LRRAMG K                    NGI+  +A  +
Sbjct: 819  QEQLMQVVVDAAGFTAAEADSLRRAMGSKRSPRRMAALRERFYDGLERTNGITGEVADRL 878

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            ++ +  FA YGF +SHA ++A + Y +AW K HYP EF  A +  +       +    DA
Sbjct: 879  WDKIVAFASYGFPESHAQSFASLVYYSAWFKYHYPAEFCVALLRAQPMGFYSPQSLIADA 938

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA---------------------------- 841
            R+  ++I+P  +N   V+ +   +     L A                            
Sbjct: 939  RRHGVKILPVDINASGVEPETVIDVDAAGLLASASVGSPNRGVSPSADPASSFGSTPSAS 998

Query: 842  --------IKGVGTTTAR---------------------HIMEASA-DKPFDSLEDFCSR 871
                    + G+G  TA                       I+ A   +  F ++ D    
Sbjct: 999  PEANRPQGVHGLGRGTAEPVGAIRLGLASVSGIGKDVATAIVRARENNGAFVTVSDLSR- 1057

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
                 L  + +E L  AGAL+C G  R Q + +           E+       ++     
Sbjct: 1058 --QAGLTVKHVEQLARAGALECLGLDRRQAVWAAG-----VAATEREGMLPGSSL----- 1105

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG------------ 979
                  + +      N+      +    G    GHP+ + + +L +              
Sbjct: 1106 ------VQVPSLPGMNAFELTAADLATTGITPDGHPVVLLRQLLEQWHELPIRTGIRAGQ 1159

Query: 980  ------IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                  +      +    G  IR+A +V  +Q+  T  G  + +    +         
Sbjct: 1160 VRGGAPVVPANRLLDIPDGTRIRVAGVVTHRQRPATAGG--VVFFGIEDETGLANVMV 1215



 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 11  FVHLQV-HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           F  L+  H +Y  L GA     ++ K A      +A  D + ++    F+       
Sbjct: 95  FAELRTYH-AYHFLHGADQPETMVAKAAELGITHLACLDRDGMYGTARFATAVAEHN 150


>gi|169344046|ref|ZP_02865034.1| DNA polymerase III, alpha subunit [Clostridium perfringens C str.
           JGS1495]
 gi|169297781|gb|EDS79878.1| DNA polymerase III, alpha subunit [Clostridium perfringens C str.
           JGS1495]
          Length = 416

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 141/418 (33%), Positives = 224/418 (53%), Gaps = 27/418 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +HS YSLL+G+  +  ++ +       +IA+TD   ++  ++  ++A A GI+PI
Sbjct: 6   FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +GC++ +  +     +N           +VLLV   +GY+ L+++VS   + +      R
Sbjct: 66  LGCEVYVVPKSRKIKSNDEDN---KTYHLVLLVKNEKGYENLMKIVSVASI-EGFYYKPR 121

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I   +L+E  +EG+I L+    G + +A    +   A +    ++  F D  Y+ LQ H 
Sbjct: 122 IDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAATFYRDTFKDGFYLELQNHG 180

Query: 191 GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
             ++ + ++V +QLA    +PLVATN+  ++++ED +AHD+LM +     V   +R R  
Sbjct: 181 IEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRYP 240

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
           +   YLK+  EM  +F  +PEALENT++IA  C+F  + H   LP+F   E      E  
Sbjct: 241 SDQFYLKSPEEMWDMFDYIPEALENTLKIAEECNFDYEFHVSKLPKFPLPEGV----EPF 296

Query: 309 NELRNKAVAGLEVRLAQGAI-------------AKGYHAQDYR---QRLDFELNVIARMK 352
             LR     GL  RL +                  G + +  +   +RL++EL VI +M 
Sbjct: 297 EYLRKTCFDGLIDRLEELKPLKEKGIYDIDKVYEIGENNEKVKEDIERLEYELGVIKQMG 356

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           +  YFLIV DFI++A  N IP GPGRGS AG++ AY L IT IDP+++SLLFER L  
Sbjct: 357 YVDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERKLRC 414


>gi|168210465|ref|ZP_02636090.1| PHP domain protein [Clostridium perfringens B str. ATCC 3626]
 gi|170711464|gb|EDT23646.1| PHP domain protein [Clostridium perfringens B str. ATCC 3626]
          Length = 416

 Score =  369 bits (948), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 141/418 (33%), Positives = 225/418 (53%), Gaps = 27/418 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +HS YSLL+G+  +  ++ +       +IA+TD   ++  ++  ++A A GI+PI
Sbjct: 6   FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +GC++ +  +     +N           +VLLV   +GY+ L+++VS   + +      R
Sbjct: 66  LGCEVYVVPKSRKIKSNDEDN---KTYHLVLLVKNEKGYENLMKIVSVASI-EGFYYKPR 121

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I   +L+E  +EG+I L+    G + +A    +   A +  + ++  F D  Y+ LQ H 
Sbjct: 122 IDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAAIFYRDTFKDGFYLELQNHG 180

Query: 191 GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
             ++ + ++V +QLA    +PLVATN+  ++++ED +AHD+LM +     V   +R R  
Sbjct: 181 IEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRYP 240

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
           +   YLK+  EM  +F  +PEALENT++IA  C+F  + H   LP+F   E      E  
Sbjct: 241 SDQFYLKSPEEMWDMFDYIPEALENTLKIAEECNFDYEFHVSKLPKFPLPEGV----EPF 296

Query: 309 NELRNKAVAGLEVRLAQGAI-------------AKGYHAQDYR---QRLDFELNVIARMK 352
             LR     GL  RL +                  G + +  +   +RL++EL VI +M 
Sbjct: 297 EYLRKTCFDGLIDRLEELKPLKEKGIYDIDKVYEIGENNEKVKEDIERLEYELGVIKQMG 356

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           +  YFLIV DFI++A  N IP GPGRGS AG++ AY L IT IDP+++SLLFER L  
Sbjct: 357 YVDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERKLRC 414


>gi|168212733|ref|ZP_02638358.1| DNA polymerase III, alpha subunit [Clostridium perfringens CPE str.
           F4969]
 gi|170715762|gb|EDT27944.1| DNA polymerase III, alpha subunit [Clostridium perfringens CPE str.
           F4969]
          Length = 416

 Score =  369 bits (948), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 141/418 (33%), Positives = 224/418 (53%), Gaps = 27/418 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +HS YSLL+G+  +  ++ +       +IA+TD   ++  ++  ++A A GI+PI
Sbjct: 6   FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +GC++ +  +     +N           +VLLV   +GY+ L+++VS   + +      R
Sbjct: 66  LGCEVYVVPKSRKIKSNDEDN---KTYHLVLLVKNEKGYENLMKIVSVASI-EGFYYKPR 121

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I   +L+E  +EG+I L+    G + +A    +   A +    ++  F D  Y+ LQ H 
Sbjct: 122 IDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAATFYRDTFKDGFYLELQNHG 180

Query: 191 GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
             ++ + ++V +QLA    +PLVATN+  ++++ED +AHD+LM +     V   +R R  
Sbjct: 181 IEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRYP 240

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
           +   YLK+  EM  +F  +PEALENT++IA  C+F  + H   LP+F   E      E  
Sbjct: 241 SDQFYLKSPEEMWDMFDYIPEALENTLKIAEECNFDYEFHVSKLPKFPLPEGV----EPF 296

Query: 309 NELRNKAVAGLEVRLAQGAI-------------AKGYHAQDYR---QRLDFELNVIARMK 352
             LR     GL  RL +                  G + +  +   +RL++EL VI +M 
Sbjct: 297 EYLRKTCFDGLIDRLEELKPFKEKGIYDIDKVYEIGENNEKVKEDIERLEYELGVIKQMG 356

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           +  YFLIV DFI++A  N IP GPGRGS AG++ AY L IT IDP+++SLLFER L  
Sbjct: 357 YVDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERKLRC 414


>gi|194100685|ref|YP_002003434.1| gp76 [Mycobacterium phage Predator]
 gi|192758401|gb|ACF05173.1| gp76 [Mycobacterium phage Predator]
          Length = 1104

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 213/925 (23%), Positives = 374/925 (40%), Gaps = 88/925 (9%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV    HS++S  +G  S+   + ++AA    A+A+++  N+ S ++  ++   AGI+PI
Sbjct: 3   FVSFHTHSTFSYGDGFGSVEAHVQRVAALGMSAVALSEHGNVSSHVQLERECNKAGIKPI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +         K T        +   + +     EGY+ L  LV++ +L     Q   
Sbjct: 63  FGIEAYFGPVSEEKRT-------QSKTHLTIFAMDEEGYRNLNRLVTQSWLD--FYQYPT 113

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS---------------QVAEKRLLTFK 175
           +    L++  + GL + +G +                            +   + L  F 
Sbjct: 114 VSWENLRK-HSAGLAVFSGCADSLASCTLLGGKFLGPRRDPELDSSKRQKAVHRVLARFT 172

Query: 176 KLFGDRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
            +F DR ++  QR  G  R R   ++  ++A    +PL+AT +  +           L A
Sbjct: 173 DVFEDRFFLETQRFPGLPRTRAINAEFARIARDTGIPLIATADVHYPFPHQNIMQTALHA 232

Query: 234 VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD------------------LPEALENTV 275
                            D  L        I  D                     A    V
Sbjct: 233 AHRG-GSVATVDAEWEYDILLTYPESDEEIIKDLVGTGLSEDEAKQAVANTAELAKRCNV 291

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEEN-------ELRNKAVAGLEVRLAQGAI 328
           E+ +                   +      +EE         + N+   G + R  Q   
Sbjct: 292 ELPKAKPIRFPGVKIDKAMLCGPKAPSEGDKEEVRKFATQLYMMNEIKKGWKYRCKQ-RP 350

Query: 329 AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
                A++Y +R+ +E++VI+   F  YFL+ +D + + K     VGP RGS AGS+  Y
Sbjct: 351 EIAKRAKEYSRRISYEMSVISEKDFMDYFLVNSDLVSYTKDQGKGVGPARGSAAGSLVCY 410

Query: 389 ALTITDIDPLR---FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
            L IT+IDPL      ++FERF++  R  MPD D+DF  + R  +++   + YG + VA 
Sbjct: 411 LLRITEIDPLYPVFNKMIFERFIDKTREDMPDIDLDFDPEARPVIVQRAVDLYGQDHVAN 470

Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP-----NDPAHPVSLQAIADDSRFRE 500
           +      +  +A+  + +A  +P +    +   I      ++      L  +       +
Sbjct: 471 VGNHMGYRGVSAMNAMAKAHALPQNTFKAIKDRIQDRTETDERVDDTILDVLESYGDNPD 530

Query: 501 ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS------DLP 554
                 +    ++++  LEG  R    HAAG VIG  P+     +Y            + 
Sbjct: 531 VAKVVEAHPNPVKLATWLEGNKRGLGVHAAGFVIGSEPIPDTCAIYSRESGSGRKRKTVT 590

Query: 555 VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP-------FDDHE 607
           V  ++ +  E  GL+K DFLGL T+ +++++ + +      +   L P            
Sbjct: 591 VIPYDKRDAEYLGLLKNDFLGLLTIGVIRRAAEMVGMTMEDMYTLLPPEGDLRDYDHSRP 650

Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRK 665
                     +GIFQ E    R  L  + P     +  + +L RPGP        Y   K
Sbjct: 651 VIEGFLNDDLVGIFQFEGGTTRGVLRDVVPTEFRHLADINALSRPGPKYGGQTERYIAVK 710

Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IKEE 724
            G+E++ SIHPL D  ++ T G I+YQEQ+M I + L+G+ + +   +R+ +GKK  + +
Sbjct: 711 AGEEELESIHPLFDQHVEWTYGQIVYQEQIMFILRDLAGFPIEKVLKVRKIIGKKLGEHQ 770

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
                E F +G + NG+ +  A  ++  +   A Y FN SH+ +Y+ I++Q+ W+K HYP
Sbjct: 771 FAALWEDFKNGCATNGVDENTARRVWGGITSAAGYAFNTSHSYSYSWIAWQSMWLKVHYP 830

Query: 785 VEFLAASMTLE---MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-------NR 834
             F A+S++      ++  +     QDA    I+++P   +    ++ +           
Sbjct: 831 AAFFASSLSFNGDGKEDKPRRTALIQDAIAHEIKVLPIDPSRSGENWDIERQMPGVDAGA 890

Query: 835 IYYSLAAIKGVGTTTARHIMEASAD 859
           I      I  VG  TA  I+    D
Sbjct: 891 IRPGFIQIPKVGEATASDIVAWRDD 915


>gi|168216561|ref|ZP_02642186.1| DNA polymerase III, alpha subunit [Clostridium perfringens NCTC
           8239]
 gi|182381547|gb|EDT79026.1| DNA polymerase III, alpha subunit [Clostridium perfringens NCTC
           8239]
          Length = 416

 Score =  368 bits (945), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 139/418 (33%), Positives = 220/418 (52%), Gaps = 27/418 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL +HS YSLL+G+  +  ++ +       +IA+TD   ++  ++  ++A A GI+PI
Sbjct: 6   FCHLHLHSGYSLLDGSGKIKPLIKRAKELGMESIALTDHGVMYGCVDLYKEAKAEGIKPI 65

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +GC++ +  +      N           +VLLV   +GY+ L+++VS   + +      R
Sbjct: 66  LGCEVYVVPKSRKIKNNDEDN---KTYHLVLLVKNEKGYENLMKIVSVASI-EGFYYKPR 121

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I   +L+E  +EG+I L+    G + +A    +   A +    ++  F D  Y+ LQ H 
Sbjct: 122 IDREYLKE-HSEGIIALSACLGGEVQKAILNGNIDKAREAATFYRDTFNDGFYLELQNHG 180

Query: 191 GYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV- 248
             ++ + ++V +QLA    +PLVATN+  ++++ED +AHD+LM +     V   +R R  
Sbjct: 181 IEEQKKVNEVNIQLAKELNIPLVATNDVHYINQEDSKAHDILMCIQTGKTVDDPNRRRYP 240

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
           +   YLK+  EM  +F  +PEALENT++IA  C+F  + H   LP+F   E      E  
Sbjct: 241 SDQFYLKSPEEMWDMFDYIPEALENTLKIAEECNFDYEFHVSKLPKFPLPEGV----EPF 296

Query: 309 NELRNKAVAGLE-------------VRLAQGAIAKGYHAQDYR---QRLDFELNVIARMK 352
             LR     GL              +         G +    +   +RL++EL VI +M 
Sbjct: 297 EYLRKTCFDGLIDRLEELKSLKEKGIYDIDKVYEIGENNDKVKEDIERLEYELGVIKQMG 356

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           +  YFLIV DFI++A  N IP GPGRGS AG++ AY L IT IDP+++SLLFER L  
Sbjct: 357 YVDYFLIVWDFIKYANDNGIPTGPGRGSAAGALVAYTLGITKIDPMKYSLLFERKLRC 414


>gi|153005061|ref|YP_001379386.1| DNA polymerase III, alpha subunit [Anaeromyxobacter sp. Fw109-5]
 gi|152028634|gb|ABS26402.1| DNA polymerase III, alpha subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 1197

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 207/764 (27%), Positives = 342/764 (44%), Gaps = 56/764 (7%)

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                          LR     G   R        G   +D  ++L  EL ++ ++ ++ Y
Sbjct: 410  TPIDPADGVSGMALLRALVREGARWRYG------GEPPEDVARQLARELELVEQLGYASY 463

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
            FL V D +++A+   I    GRGS A S   YAL IT IDP+R  LLFERF++ +R   P
Sbjct: 464  FLTVWDVVRFARSRGIL-CQGRGSAANSAVCYALGITAIDPVRMGLLFERFISAERGEPP 522

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D DIDF  +RR+EVI+YV  +YG +R   +    + + K+ALRDVG+AL +   QVDRL 
Sbjct: 523  DIDIDFEHERREEVIQYVYERYGRDRAGMVCEVITYRGKSALRDVGKALGLSLPQVDRLA 582

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
            KL+       +S       ++      A   V   L+++++L+G  RH S H  G VI  
Sbjct: 583  KLV--GMYEDLSEVGPELLAQAGLDVEASDRVRMTLDLARELQGFPRHLSIHVGGFVITR 640

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG--- 593
            RPL + VP+         + Q++   +    L+K D LGL  LT L ++L  LA      
Sbjct: 641  RPLCETVPIEPAAMPGRTIVQWDKDDLADLDLLKVDLLGLGMLTALSRALALLAAHRPAP 700

Query: 594  ---------VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
                         L+ IP +D   Y +L    ++G+FQ+ES         ++P    D++
Sbjct: 701  ALPTAAGLAHPDSLATIPPEDPAVYDMLCKADSIGVFQIESRAQMSLAPRLKPRNFYDLV 760

Query: 645  ALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
              V + RPGPI   +V+    R++GKE++   +P ++P+L +T GV ++QEQ+M++A + 
Sbjct: 761  ISVGIVRPGPIQGGMVHPYLRRRDGKEQVRYPYPPLEPVLAKTLGVPLFQEQIMRLAVVA 820

Query: 703  SGYSLSEADVLRRAMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            +G++  EAD LRR M  ++  E++   K R ++G ++ GIS   A  IF  L  FA YGF
Sbjct: 821  AGFTPGEADELRRLMTHRRSHEKLAAMKARLLAGMAERGISAADAELIFHQLLGFAGYGF 880

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
             +SH+A++A++ Y +AW++ ++P  F  A +  +           +DA++  +++    V
Sbjct: 881  PESHSASFALLVYASAWLRRYHPAAFACALLNSQPMGFYAPHTLVEDAKRHGVEVRGVDV 940

Query: 822  NTPCVDFKVGD------------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                 +  +                I   L  ++G+       I+ A   +P   L D  
Sbjct: 941  CASGWESGLEGRAPGEPAGAGEAPAIRLGLHLVRGLPRDVGDAIVAARRARPLADLGDLV 1000

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             R     L+R  L  L  A AL      R   +                      ++FA 
Sbjct: 1001 RR---GGLSRAWLVRLAEADALGSLAPDRRGAIW-----------RSLAMEADGGDLFAG 1046

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
                  D          +++     +         GHP+ V +  L    ++   E    
Sbjct: 1047 VTPAEPDA----TLPSASAAEEVSEDFATTSVSVRGHPMAVLRGTLPGGAVRTARELTRL 1102

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 + +A +V+ +Q+ +T  G  I +V+  +          P
Sbjct: 1103 PDRAPVEVAGLVIVRQRPQTAAG--IVFVSLEDETGIANLVVMP 1144



 Score =  200 bits (509), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 104/294 (35%), Gaps = 35/294 (11%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L+  S +S LEGA     ++ + +     A+A+TD N L+  +    +A   G+ 
Sbjct: 2   PRYAELRCRSCFSFLEGASHPEELVARASELGLSALALTDVNGLYGIVRAHGEAKRRGLP 61

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ---- 124
            ++G +L +                     +VLL    EGY  L  L +R +  +     
Sbjct: 62  LLVGAELVVT-----------GLATGRPARLVLLAQDREGYAGLCRLATRAHGAEDPARA 110

Query: 125 ---GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                +               GL  L  G+ G                     K++FG R
Sbjct: 111 APRRPREEVAVALEAVAARARGLFALFPGADGD---------------AAARLKEIFGAR 155

Query: 182 LYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
           L + + RHR   +  R      +     + +  TN+            DVL  V H T V
Sbjct: 156 LALAVARHRVAGEEARVLAARAIGRRLGIRIAVTNDVHTHDRRRQVLQDVLTCVRHGTTV 215

Query: 241 SQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            +  R      +  LK   EM  ++ D PE LE   EIA  C F L+      P
Sbjct: 216 DRAGRRLFPNAERTLKAPEEMARLWGDFPEGLEAAAEIADGCRFRLEEIRGEHP 269


>gi|288919037|ref|ZP_06413378.1| DNA-directed DNA polymerase [Frankia sp. EUN1f]
 gi|288349577|gb|EFC83813.1| DNA-directed DNA polymerase [Frankia sp. EUN1f]
          Length = 771

 Score =  368 bits (944), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 213/727 (29%), Positives = 356/727 (48%), Gaps = 39/727 (5%)

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
              A+         +L  EL VI ++ F GYFLIV D +++ ++++I    GRGS A S  
Sbjct: 9    GPAQAERVAGAYDQLVHELKVIEQLGFPGYFLIVHDIVEFCRRSDIL-CQGRGSAANSAV 67

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
             YAL IT++D + F LLFERFL P+R   PD DID    RR+EVI+YV  +YG +R AQ+
Sbjct: 68   CYALGITNVDAVSFGLLFERFLAPERDGPPDIDIDIESGRREEVIQYVYGRYGRDRAAQV 127

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
                + + ++A+RDV RAL     Q D   + I      P       D     +A     
Sbjct: 128  ANVITYRPRSAVRDVARALGFSPGQQDAWSRQIDRGMPRPAHPADRPDTRADADADADAG 187

Query: 507  SVDR---------------LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
            +                  +L+++ +L G  RH   H+ G+VI DRP++++VP+      
Sbjct: 188  AGAGAGIEAPDTSAGIPAEVLDLAGQLLGFPRHLGIHSGGMVICDRPVAEVVPVEWARMP 247

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYH 610
               V Q++      AGL+KFD LGL  L++L    D +    G ++DL  IP +D   Y 
Sbjct: 248  GRTVVQWDKDDCAAAGLVKFDLLGLGMLSMLHGVFDLIRTHHGRQLDLGSIPPEDPAVYD 307

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKNGK 668
            +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++  Y  R+NG 
Sbjct: 308  MLCAADSVGVFQVESRAQMSTLPRLRPRRFYDLVVEVALIRPGPIQGGSVHPYIRRRNGA 367

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDK 727
            E++V  HPL+   L++T GV ++QEQ+MQ+A  ++G++ +EAD LRRAM  K+  E +D+
Sbjct: 368  EEVVYPHPLLRRSLEKTLGVPLFQEQLMQMAIDVAGFTPAEADQLRRAMGAKRATERIDR 427

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             + RF +G + NGI+  +A +++  LA FAD+GF +SH+ ++A + Y ++W+K +YP  F
Sbjct: 428  LRTRFYAGMAVNGITGAVADDLYAKLAAFADFGFPESHSVSFAFLVYASSWVKLYYPAAF 487

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--RIYYSLAAIKGV 845
             AA +  +       +    DAR+  + +  P +N       +  +   +   LA I+ +
Sbjct: 488  CAALLNAQPMGFYSPQSLVADARRHGVVVHGPDLNASEAGVTLVGSPAALRLGLAGIRRL 547

Query: 846  GTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
            G   A  I+ E  A  P+  + D   RV  +      +E+L  AGA  CFG +R + L +
Sbjct: 548  GDALAERIVAERRACGPYQDMSDLVRRVGLRT---EQIEALATAGAFGCFGLARREALWA 604

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
               +          R +     F  +    +            ++     +    G    
Sbjct: 605  AGAV----AQARPGRLDGMV--FGADVSAVAAA-----LPGMTTAETVVADLWATGITPG 653

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             +P ++ +  L ++G+           G  + +A +V  +Q+ +T  G+   +++  +  
Sbjct: 654  CYPTELVRGRLDELGVVVARRLRDLGGGRRVLVAGVVTHRQRPQTAGGT--TFLSLEDET 711

Query: 1025 KEYEANF 1031
                   
Sbjct: 712  GLVNIIC 718


>gi|260567285|ref|ZP_05837755.1| error-prone DNA polymerase [Brucella suis bv. 4 str. 40]
 gi|260156803|gb|EEW91883.1| error-prone DNA polymerase [Brucella suis bv. 4 str. 40]
          Length = 846

 Score =  367 bits (942), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 215/837 (25%), Positives = 359/837 (42%), Gaps = 69/837 (8%)

Query: 16  VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPII 71
             S++S L GA     ++++  A     I I D N L   +    +       +G +  I
Sbjct: 9   AASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQWKDIRKESGFRLFI 68

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           GC+L                     P +V+       Y +L  L++        K    +
Sbjct: 69  GCRLSFIDG---------------TPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGECHL 113

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHR 190
             + L     +  I +        D A           RL    +     +++ L   H+
Sbjct: 114 EWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTMPHQ 163

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VT 249
           G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R     
Sbjct: 164 GQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLEKN 223

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            + +LK   EMV +F D PEA+  T +     +F L       P           K  + 
Sbjct: 224 AERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KTAQQ 279

Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            L +    G         I         +  ++ EL +IAR+++  YFL V D +  A++
Sbjct: 280 HLYDLVWEGAARHYGADII-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTHARE 334

Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
             I    GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +RR+E
Sbjct: 335 KGIL-CQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHERREE 393

Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
           V++YV ++Y  +R A + T  S ++++ +RDVG+AL +       L   +       +  
Sbjct: 394 VMQYVYDRYSRDRAAIVATVISYRSRSVIRDVGKALGLSEDVTAALANTVWGLSGGGIDR 453

Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
           Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+    
Sbjct: 454 QHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIGPAA 509

Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD------LSLIPF 603
                  +++   I++ GL+K D L L  LT ++K+ D + Q   ++       L+ +P 
Sbjct: 510 MDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLASLPR 569

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
           +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+  
Sbjct: 570 EDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMVHPY 629

Query: 664 RKNGKEKIVSIHP----------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            +    +     P           +  +L +T+GV ++QEQ M+IA   + ++  EA+ L
Sbjct: 630 LRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEANQL 689

Query: 714 RRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           RRAM    K   +   +++ I G    G  +T A N F  +  F +YGF +SHAA++A +
Sbjct: 690 RRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASFAHL 749

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK-------FCQDARQFNIQIMPPSVN 822
            Y +AW+K H+P  F AA +  +     + +          +D      +  P    
Sbjct: 750 VYISAWLKCHHPEVFAAALLNSQPMGFLRPRPDRARCARAWRDGAARRCEFQPMGQY 806


>gi|261755958|ref|ZP_05999667.1| error-prone DNA polymerase [Brucella suis bv. 3 str. 686]
 gi|261745711|gb|EEY33637.1| error-prone DNA polymerase [Brucella suis bv. 3 str. 686]
          Length = 846

 Score =  367 bits (942), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 216/837 (25%), Positives = 360/837 (43%), Gaps = 69/837 (8%)

Query: 16  VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPII 71
             S++S L GA     ++++  A     I I D N L   +    +       +G +  I
Sbjct: 9   AASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQWKDIRKESGFRLFI 68

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           GC+L                     P +V+       Y +L  L++        K    +
Sbjct: 69  GCRLSFIDG---------------TPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGECHL 113

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHR 190
             + L     +  I +        D A           RL    +     +++ L   H+
Sbjct: 114 EWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTMPHQ 163

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VT 249
           G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R     
Sbjct: 164 GQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLEKN 223

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            + +LK   EMV +F D PEA+  T +     +F L       P           K  + 
Sbjct: 224 AERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KTAQQ 279

Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            L +    G         I         +  ++ EL +IAR+++  YFL V D +  A++
Sbjct: 280 HLYDLVWEGAARHYGADII-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTHARE 334

Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
             I    GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +RR+E
Sbjct: 335 KGIL-CQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHERREE 393

Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
           V++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       +  
Sbjct: 394 VMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGGIDR 453

Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
           Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+    
Sbjct: 454 QHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIGPAA 509

Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD------LSLIPF 603
                  +++   I++ GL+K D L L  LT ++K+ D + Q   ++       L+ +P 
Sbjct: 510 MDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLASLPR 569

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
           +D   Y +L    +LG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+  
Sbjct: 570 EDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQEFYDLVIEVAIVRPGPIQGDMVHPY 629

Query: 664 RKNGKEKIVSIHP----------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
            +    +     P           +  +L +T+GV ++QEQ M+IA   + ++  EA+ L
Sbjct: 630 LRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQEQAMRIAMEAAKFTPEEANQL 689

Query: 714 RRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           RRAM    K   +   +++ I G    G  +T A N F  +  F +YGF +SHAA++A +
Sbjct: 690 RRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQIKGFGEYGFPESHAASFAHL 749

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK-------FCQDARQFNIQIMPPSVN 822
            Y +AW+K H+P  F AA +  +     + +          +D      +  P    
Sbjct: 750 VYISAWLKCHHPEVFAAALLNSQPMGFLRPRPDRARCARAWRDGAARRCEFQPMGQY 806


>gi|85373905|ref|YP_457967.1| DNA polymerase III alpha chain [Erythrobacter litoralis HTCC2594]
 gi|84786988|gb|ABC63170.1| DNA polymerase III alpha chain [Erythrobacter litoralis HTCC2594]
          Length = 1262

 Score =  367 bits (941), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 220/885 (24%), Positives = 387/885 (43%), Gaps = 90/885 (10%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            ++P FV L + S +S L GA    +++    +    AI I D N++   +    +A   
Sbjct: 24  PRAP-FVELGLVSCFSFLRGASDAVDLVLSARSAGYDAIGIADVNSMAGVVRIHTEAQTL 82

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD-- 123
            ++P+IG ++                      + +        Y R+  L+S   +    
Sbjct: 83  KLRPVIGTRI----------------ETVEGLAFLAYPRDRAAYGRVCRLISAGRMATLE 126

Query: 124 ---QGKQSVRICLSWLQEIGTEGLIMLTGGSSGP------IDRAFFFNSSQVA------- 167
              Q K    I L+ L E   E  ++L             I+                  
Sbjct: 127 GEWQAKGECDISLAMLAEHSEEVQLILLPPDDLAQRFTIKIESNIIPFRHPGLDPGSRFS 186

Query: 168 -----EKRLLTFKKLFGDRLYVNLQ---------------RH-------RGYDRYRESQV 200
                E+          +++ +                  RH       RG D  R  ++
Sbjct: 187 SRTAPEEAGPRLGDRGDEKVVIEAVFPDILPHLTRQLPTLRHLAASYLYRGDDIARIDRL 246

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSE 259
             LA  + L L+ATNN  + + E     DV+ A+ H T V++         + YLK    
Sbjct: 247 DTLAKANNLTLLATNNVHYHAPERRPLQDVMTAIRHKTTVARAGHLLHGNAERYLKPPET 306

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           MV +F+  P A+    E+A  C+F L+      P+ I  +        +  L  +   G 
Sbjct: 307 MVHLFARWPHAIAAAREVADACNFSLEELKYEYPQEIYPDGM----TPQQFLEKETWKGT 362

Query: 320 EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV-GPGR 378
           + R   G           R+ L  EL +IA++  + YFL + D + +A+  + P+   GR
Sbjct: 363 QWRYPNGL------PDSVRETLQRELALIAKLDLARYFLTIKDIVDYARSVDPPILCQGR 416

Query: 379 GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
           GS A S   + L IT +DP +  LLF+RF++ +R   PD D+DF  +RR+EVI+++  KY
Sbjct: 417 GSAANSAVCFVLGITSVDPAKHQLLFDRFISEERKEPPDIDVDFEHERREEVIQHIYRKY 476

Query: 439 GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
           G  R     T    + + A+R+VG+A+ +       L + +       +    +A+    
Sbjct: 477 GRHRAGLTATVIHYRPRMAIREVGKAMGLSEDVTSALARTVWGGWGKEIGEGHVAET--- 533

Query: 499 REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
               +ADP + R+L +++++ G+ RH S H  G ++ +  L++ VP+      D    ++
Sbjct: 534 -GMDVADPQLRRVLTLTRQMIGMPRHLSQHVGGFILTEGALTETVPIGNGAMPDRSFIEW 592

Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGT 617
           +   IE  G++K D L L  LT ++K LD L     +  +L+ +P +D ETY +L    +
Sbjct: 593 DKDDIEALGILKVDVLALGMLTCIKKCLDLLENHHERPLELATVPREDPETYAMLRKGDS 652

Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP- 676
           LG+FQ+ES      L  ++P    D++  V++ RPGPI   +V+   K  + +   + P 
Sbjct: 653 LGVFQVESRAQMNMLPRLRPREFYDLVIQVAIVRPGPIQGDMVHPYLKRRRGEEKVVIPA 712

Query: 677 ---------LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEEMD 726
                     +  +L+ T GV I+QEQ M+IA   + +S  EA+ LR+AM     +  +D
Sbjct: 713 PSPEHGAPDELSSILERTLGVPIFQEQAMKIALDAARFSSIEANRLRKAMATFRSRGMVD 772

Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
           + ++  +      G  +  A   F  +  F +YGF +SHAA++A + Y ++W+K H+P  
Sbjct: 773 ELQDMMVERMVTRGYDREFAERCFNQIRGFGEYGFPESHAASFAHLVYVSSWLKCHFPAA 832

Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
           F  A +  +        +  +DA +  ++++P  VN    D  + 
Sbjct: 833 FACALLNSQPMGFYAPAQIVRDAAEHGVEVLPADVNCSQWDCTLE 877



 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 62/202 (30%), Gaps = 17/202 (8%)

Query: 834  RIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             +   L  + G+    A  ++     + PF  +     R     +    +E L  A    
Sbjct: 957  ALRLGLRQVDGLPEHVAAQMLAERDVNGPFTDVRALRDRA---GIGPAHVERLASADCFT 1013

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF-AHEKGTFSDKITLEKFSVENSSVR 951
              G  R Q L    ++                 +F A  +     +           S  
Sbjct: 1014 SMGLPRRQALWDARSLV----------AGPDLPLFRAAAERDEGAERKPTMLPAMPLSEE 1063

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK 1011
               + +        HP+   +P L + G     +       + +++A +V+ +Q+  + K
Sbjct: 1064 VVADYQTTRLSLKAHPMAFLRPELAERGFVRACDLRDRKFRSMVQVAGVVLIRQRPGSAK 1123

Query: 1012 GSRIGWVTFSEPAKEYEANFFP 1033
            G  + ++T  +         +P
Sbjct: 1124 G--VCFITLEDETGVINLVVWP 1143


>gi|300777212|ref|ZP_07087070.1| DNA polymerase III, alpha subunit [Chryseobacterium gleum ATCC 35910]
 gi|300502722|gb|EFK33862.1| DNA polymerase III, alpha subunit [Chryseobacterium gleum ATCC 35910]
          Length = 1024

 Score =  366 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 236/1035 (22%), Positives = 435/1035 (42%), Gaps = 113/1035 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H+ +SL  G +S+ +++      +   +A+TD N +    +F +     GI+P++G 
Sbjct: 3    LNCHTYHSLRYGTISVEDLVQLAVDYKLKVLALTDINTVTGIYQFYRLCQDNGIKPVVGV 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + ++                     + L    +G   +  L++                
Sbjct: 63   DVRVENVQYY----------------ICLAKNPKGIAEVNRLLT---------------- 90

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
                +   +G+ +     + P++  F   S Q   ++LL       +  ++ + R    +
Sbjct: 91   ----DYNCDGISI--PKMNPPLEHCFVIYSLQNIPEKLL-------EHEFIGV-RENELN 136

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                S++  L +     +V  +   F ++E+Y+ H VL A+  +T+ ++           
Sbjct: 137  LLINSELKSLIHK----MVILHPVTFKTDEEYKLHKVLRAIDGNTLFTKLTEKDYCRKDE 192

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
                 + +             +E  +                 +K   D ++ +   L  
Sbjct: 193  CFIDKKKLLSQFGH---YPEIIENTKHIVNECSFDFEFNTPKNKKYFTDSRENDFKLLSQ 249

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
             A  GL  R           +Q  + R++ EL VI  + F GYFLI  D IQ++ +    
Sbjct: 250  LAYEGLSKRYPDN-------SQLAKARVEKELKVIDELNFCGYFLITWDIIQYSNRMGFM 302

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
               GRGSGA S+ AY L ITDI PL   L FERFLN +R S PDFDID+    RD ++ Y
Sbjct: 303  -HVGRGSGANSIIAYCLGITDICPLELDLYFERFLNLNRKSPPDFDIDWSWKNRDVILEY 361

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            +  KYG + VA   T    + K+  R++G+   +P  ++D+L K           +Q I 
Sbjct: 362  IFKKYGKDHVAFCGTNVEFKRKSRFRELGKVFGLPKDELDQLSKKPKEQHDQNSVVQLIY 421

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
               +                    L G     S H+ GI+I + P++    +      + 
Sbjct: 422  KYEQL-------------------LVGFPNQRSMHSCGILISEEPITNYSALEFPP-KEF 461

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVDLSLIPFDDHETYH 610
            P+ QF+M   E  GL KFD L  + L  ++ +++ + ++    + ++ + I  D+ +   
Sbjct: 462  PIVQFDMHTAEDIGLEKFDILSQRGLGTIKDTVNLIKEKRGIHIDIEDTRISKDEIKCNE 521

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGK 668
             L+   T+G F +ES  MR  L  ++ D  + ++A  S+ RPG   + ++  Y  R N  
Sbjct: 522  YLSVGKTIGCFYIESPAMRGLLRRLKCDNYKVLVAASSIIRPGVAQSGMMREYIFRHNHP 581

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             +    H + +  L ET G+++YQE V+++A    G S +  DVLRRAM  K +     Q
Sbjct: 582  GQFEYFHDVFEKELGETYGIMVYQEDVIKVAMHFGGVSAANGDVLRRAMSGKGRSLSALQ 641

Query: 729  KER--FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +  F     + G    ++  ++  +  FA Y F K+H+A+YAV SYQ+ ++K +YP+E
Sbjct: 642  KLKDDFFESCKRKGHPDQLSQEVYRQIESFAGYSFCKAHSASYAVESYQSLYLKVYYPIE 701

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+ +++        + + +  +A+     I  P +N       V  + +Y  L  I+ + 
Sbjct: 702  FMVSAIN-NGGGFYRTEVYVHEAKMSGATIHNPCINLSEFHTTVYGSDVYLGLMHIEKLE 760

Query: 847  TTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
             +  + I E    +  + SLEDF  RV+   +    L+ L+F GA    G  + +LL   
Sbjct: 761  ASIKQFIPEERKENGDYKSLEDFVKRVN---IGIETLQILIFVGAFRFTGKQKHELLIEA 817

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
              +    Q+  K       ++F   +  +     L      N      +E  +LGF  S 
Sbjct: 818  RFLLSKNQYKTK-----IISLFDEPQKNYE----LPAI-DRNPFEDAFDEIEILGFPVSY 867

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR------KGSRIGWVT 1019
               D+ K   +  G    ++ +       +R+ A ++S++    +      K   + + T
Sbjct: 868  SIFDLLKT--KHRGDVLVKDLLKY-HKKQVRMLAYLISRKHVPIKMKNHPGKKDDMYFGT 924

Query: 1020 FSEPAKE-YEANFFP 1033
            + +   + ++   FP
Sbjct: 925  WIDVNGDYFDTAHFP 939


>gi|300984944|ref|ZP_07177209.1| DNA polymerase III, alpha subunit [Escherichia coli MS 200-1]
 gi|300306594|gb|EFJ61114.1| DNA polymerase III, alpha subunit [Escherichia coli MS 200-1]
          Length = 460

 Score =  366 bits (938), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 190/471 (40%), Positives = 273/471 (57%), Gaps = 21/471 (4%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K AA   PA+AITD  NL   ++F      AGI+PI+G   ++    
Sbjct: 1   MIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 Q       +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 57  ------QCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGTAGPIIDRDWLIEL-N 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R+    +S + ++ +  +++ F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  F+   D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +F+D+PEAL NTVEIA+RC+  +++           +        E+ L  +A  GL
Sbjct: 230 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-----LPQFPTGDMSTEDYLVKRAKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V +
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 404

Query: 437 KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KLIP  P   +
Sbjct: 405 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPGPGMTL 455


>gi|255531275|ref|YP_003091647.1| DNA polymerase III subunit alpha [Pedobacter heparinus DSM 2366]
 gi|255344259|gb|ACU03585.1| DNA polymerase III, alpha subunit [Pedobacter heparinus DSM 2366]
          Length = 979

 Score =  365 bits (936), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 248/1028 (24%), Positives = 425/1028 (41%), Gaps = 107/1028 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L VHSSYSL  G +S+  ++ +  +     +AITD NN    +EF ++  A G++PI G 
Sbjct: 3    LNVHSSYSLRYGTMSVEQLVKEAVSLGIEQMAITDINNSTGVMEFMRECRAHGVRPIGGI 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +             Q K  +        +    EG + L + ++     +  K+ +    
Sbjct: 63   EFR----------KQNKLLYIG------IARNKEGMKELNDFLT---FHNFSKKELPARA 103

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
               +                P        +                   ++ + R    +
Sbjct: 104  DAFKN----------ACVIYPYQSGIAVGTDD-----------------FIGI-RPGQLN 135

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                  + QL       LV        +   Y  H+ L A+  +T++++ D         
Sbjct: 136  LLYGRDLSQLKDK----LVVWQPVTVYNRLHYRLHEYLRAIDLNTLLTKVDEGNKCRPDE 191

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
                   +        A    +E   +      ++     R  +K     + E++  L  
Sbjct: 192  HFLPPGELKHL---YAAYPFILENTEKLMAGCTLNYVNKERRNKKTYKGSKAEDKLLLEQ 248

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
             A AGLE               +  +RL  EL VI  + F  YFLI  D I++  K+   
Sbjct: 249  LAWAGLEQ-------RYKGENHEAAERLKKELEVIEELDFFAYFLITWDIIRY-GKSKGY 300

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
               GRGSGA S+ AY L ITD+DP+   L FERFLN +R S PDFDID+  D R+++ +Y
Sbjct: 301  YHVGRGSGANSIVAYCLFITDVDPIELDLYFERFLNKNRSSPPDFDIDYSWDEREDIQQY 360

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            + N YG +  A + T  S + ++  R++G+ + +P +++D                    
Sbjct: 361  IFNTYGEKHTAMLGTMSSFKDRSVFREIGKVMGLPKAEIDDFL----------------- 403

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
             D   +E    +P   +++     +E +    S HA GI+I + P++    +    +   
Sbjct: 404  -DPVKQEEHKKNPVYKKIMAAHGMMEKMPNQRSIHAGGILISEDPITYYTALDLPPKDFA 462

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG---VKVDLSLIPFDDHETYH 610
             V  ++M   E  GL KFD L  + +  +++++  + Q     V +  +     D     
Sbjct: 463  TVQ-WDMYEAEAIGLDKFDILSQRGIGHIKEAVQLIRQNTGDVVDIHDTRSLLKDPRLNG 521

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGK 668
            LL    ++G F +ES  MRQ L  +  +    ++A  S+ RPG   + ++  Y    +  
Sbjct: 522  LLKEGSSIGCFYIESPAMRQLLVKLACEDYLTLVAASSIIRPGVAQSGMMATYIYNYHHP 581

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI--KEEMD 726
            E++  +HP+++  LK+T GV++YQE V++I     G  L++AD+LRR M  K   K+E D
Sbjct: 582  EEVKYLHPIMEEHLKDTYGVMVYQEDVIKICYHYGGLDLADADILRRGMSGKYRSKKEFD 641

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            +  E F   A K G  + +   I+  +A FA Y F+K+H+A+YAV SYQ+ ++KT+YP E
Sbjct: 642  RLIESFFIHAKKEGRDEEVTKEIWRQVASFAGYSFSKAHSASYAVESYQSLFLKTYYPKE 701

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+ A +        +   +  + R+    +  P VN       +  +  Y  L  I+G+ 
Sbjct: 702  FMVAVLN-NYGGFYQRWVYVHELRKVGAVVHLPCVNHSEDVVSINGSDAYLGLIGIQGLE 760

Query: 847  TTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            +     I  E  A+  +  LEDF  R     +       L+  GAL   G S+  LL  +
Sbjct: 761  SRHMTLIPKERRANGLYKGLEDFVRRT---GITLEQAILLIRIGALRFTGSSKKALLWEV 817

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
                 Y+    K      + +F  E    S    L      +      NE  +LG+  S 
Sbjct: 818  -----YSYLGNKQPEVPSQELFRME----SKACVLPPL-DSDKLEDAYNELELLGYPVSM 867

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
               D+ K   R  G        A I G  I++  + V ++   T+   ++ + TF +   
Sbjct: 868  GMFDMLKTDYR--GDVKASGLRAYI-GQTIKMVGLYVCEKTVHTKNNKKMWFGTFLDAEG 924

Query: 1026 E-YEANFF 1032
              ++   F
Sbjct: 925  NFFDTTHF 932


>gi|269115187|ref|YP_003302950.1| DNA polymerase III subunit alpha [Mycoplasma hominis]
 gi|268322812|emb|CAX37547.1| DNA polymerase III, alpha chain [Mycoplasma hominis ATCC 23114]
          Length = 996

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 278/1019 (27%), Positives = 476/1019 (46%), Gaps = 89/1019 (8%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L +++ +S LE  +++N+ + ++  +      IT+  N +S   F  +A    ++PI G 
Sbjct: 6    LHLNTIFSFLESTITINDFIQELLNNNIEYFGITEHCNFYSMPHFLNEARKHDLKPIFGL 65

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +++ +++NL                ++     E +  L +++S         +   I L
Sbjct: 66   DVNVKIENNL-------------YRFIVYCQNKESFMNL-KMLSL-----NYGKKGYIDL 106

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
            + +++     LI +     G           +     L        +  Y  + ++   +
Sbjct: 107  AEIRDYSN--LIWIEHPIFGY---------YKKTNNILEI------ENHYFAISQYDIEN 149

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
               ++                       +     H+ ++    ++++             
Sbjct: 150  SEIQNIF--------------------DKCLLINHNSILKYDDNSIIKTMSNISNNKIFE 189

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
                   V I +     LE  +E     +  L          + K  +D        L+ 
Sbjct: 190  SIYEEFKVDIETKNNSKLEELIERTNDFAKKLYFEIETKGFKMPKFKNDKNIASNEYLKL 249

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
                 +  +       K     +Y+QR   EL VI  + F+ YFL+V D++ WAK NNI 
Sbjct: 250  LLFKSIREKF-----DKYSWTDEYQQRFLKELKVIEDLNFADYFLVVQDWVNWAKNNNIK 304

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            +GPGRGS AGS+  Y L IT++DP+++ L+FERFLN +R++MPD DID   ++R++VI Y
Sbjct: 305  IGPGRGSAAGSLIGYLLNITEVDPIKYDLIFERFLNSNRVTMPDIDIDVQDNKRNDVIEY 364

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            +  KYGHE VA I+TF SL  K+A+RD+ R   +  + ++ + K I ND    +      
Sbjct: 365  LLKKYGHEFVANIVTFSSLGKKSAIRDILRINNIAPTLINEISKNIENDEQDLLVEYNEN 424

Query: 494  DDSRF---REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
             + +    +     +    R+L  + ++ G YR   THAAG+VI D+P+  + P+  +  
Sbjct: 425  RNLQLSLAKLNPNDESFSIRILNQAARISGFYRQIGTHAAGLVISDQPVISIAPVQYNS- 483

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHETY 609
             +   TQ +M+++E  GL+K D LGLKTLT +   +D + Q    K++L  I   D +T 
Sbjct: 484  ENFLQTQISMEYLEDFGLVKMDILGLKTLTTISNIVDLIYQNQNLKINLKDIDLTDQKTL 543

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             LL++  T G+FQ+ES  M +AL  ++ +  EDI+A++SL RPGPI N+ VY  RK G E
Sbjct: 544  ELLSSGHTRGVFQVESPIMIKALRQVKVNNFEDIVAIISLNRPGPIKNVSVYAKRKFGLE 603

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I  I+   D +L  T G+I+YQEQ+M+IAQ+++  +  EAD LRR + KK   EM+  K
Sbjct: 604  PIPKINNEYDKILDSTYGIIVYQEQIMKIAQVVAKMTFIEADNLRRIISKKKVNEMEDIK 663

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              FI  A KNG  K++A NIF  + KFA YGFN+SHA +Y++I++Q A++K HYP+EF  
Sbjct: 664  SIFIERAMKNGYEKSLATNIFNSIEKFASYGFNRSHAVSYSIITFQMAFLKAHYPLEFYT 723

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            + ++    + + I KF  +A +  ++I+ P +N    +  + + +I   L  IKG+G   
Sbjct: 724  SCISSAHGSQDTIAKFVNEASECGVEIVSPDINLSESEAIIKNRKIILPLTLIKGLGPEI 783

Query: 850  ARHIMEASAD-KPFDSLEDFCSRVDSKK-LNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
            A  I+E  +   P+ +  DF  ++ S + + +  +E L+ A  L  F Y++  LL  +  
Sbjct: 784  ANSIVENRSKYGPYKNFLDFLLKISSSQSIGKSTIELLIKANTLRSFNYNQNTLLNEIQK 843

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ----RVLG-FY 962
                     K        +F +     S  I       E  +     E+     +LG  Y
Sbjct: 844  NNTDTMLFIK--------MFKNNIEGVSPNIIDSYKPSEILNQDIMFEKKNEIELLGQVY 895

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
                  +         G+ G    +    GN         + +QK ++KG+    +   
Sbjct: 896  ------NF--NSSASNGMPGQTSFIDMHVGNEYLAIVNCTNVKQKISKKGNNYFELDLE 946


>gi|134098900|ref|YP_001104561.1| DNA polymerase III alpha subunit (fragment) [Saccharopolyspora
            erythraea NRRL 2338]
 gi|291009107|ref|ZP_06567080.1| DNA polymerase III alpha subunit (fragment) [Saccharopolyspora
            erythraea NRRL 2338]
 gi|133911523|emb|CAM01636.1| DNA polymerase III alpha subunit (fragment) [Saccharopolyspora
            erythraea NRRL 2338]
          Length = 631

 Score =  364 bits (935), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 179/554 (32%), Positives = 287/554 (51%), Gaps = 21/554 (3%)

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +  ++ +  R     D  + ++ + ++  EGL R+A  HA   +I   PL  ++P+++ 
Sbjct: 37   HERYSEAAEVRSLIENDSQIGKIFDTARGREGLIRNAGVHACAHIISREPLLDVLPLWKR 96

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHE 607
                  +T ++    E  GL+K D LGL  +T +  ++  +    G +++   IP DD  
Sbjct: 97   D-DGEIITGWDGPQCEAVGLLKIDILGLVNMTTIDDTVRMVKTNHGDEIEPLDIPLDDPA 155

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRK 665
            TY +L    +LG+FQLE  GM+  L+ M P    DI+A V+LYRPGP+  +  + Y +RK
Sbjct: 156  TYEMLGRGESLGVFQLEGGGMQSLLKRMAPTRFGDIVACVALYRPGPMDVNAHLDYADRK 215

Query: 666  NGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
            NGK+ +  IHP +D  LK+    T G+I+YQEQ+M IAQ ++GY+L +AD+LRRAMGKK 
Sbjct: 216  NGKKPVGPIHPELDEPLKDILGETYGLIVYQEQIMAIAQKVAGYTLGQADLLRRAMGKKK 275

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            KE MD+Q  RF +G ++ G SK     ++  +  FA Y FNKSHAAAY +++Y TA++K 
Sbjct: 276  KEVMDEQFARFEAGMAERGYSKEAIDQLWATVLPFAGYAFNKSHAAAYGLVTYWTAYLKA 335

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            HYP E++AA +T    N +K   +  + R+  I+++ P VN         + RI + L A
Sbjct: 336  HYPAEYMAALLTANAHNKDKTGVYLSECRRMRIRVLQPDVNESVTQHTAVEGRIRFGLGA 395

Query: 842  IKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            I+ VG+     I++   D   + S  DF  +V+    N+RVLESL+ AGA D   ++RM 
Sbjct: 396  IRNVGSNVVESIVKTREDKGRYASFTDFLDKVEILACNKRVLESLIKAGAFDSLEHTRMA 455

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKF----SVENSSVRFEN 954
            L Q  +        ++++      ++F    +    +D   L                  
Sbjct: 456  LTQHHEAAVDAVIGLKRHEAMGQFDLFGGGDDTAASNDASPLAHLQFTDEEWPRKQLLAY 515

Query: 955  EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------GNNIRLAAMVVSKQQKK 1008
            E+ +LG Y S HPLD  + +L         E V   R       +  ++A M+   Q++ 
Sbjct: 516  EREMLGLYVSAHPLDGAERLLAPYQDTSIAELVGGEREPGGNGKDEAKIAGMISGVQRRL 575

Query: 1009 TRKGSRIGWVTFSE 1022
             + G     VT  +
Sbjct: 576  NKNGQPWAIVTLED 589


>gi|85057409|ref|YP_456325.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789514|gb|ABC65246.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 916

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 261/960 (27%), Positives = 457/960 (47%), Gaps = 77/960 (8%)

Query: 18  SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDI 77
           S YSLL+   SL  ++ K   +    +A++D +NL+    F +      I+PI+G +++ 
Sbjct: 9   SFYSLLQSLNSLETLVQKAKENNYDFVALSD-DNLYGMPTFLKLCHKYQIKPILGLKINF 67

Query: 78  DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
              + L               +++     +G + LI++ + +    + K++ +I L+ + 
Sbjct: 68  FHNNQLAT-------------LLIYAKNDQGIKNLIQISTII----KNKETPQINLNKIA 110

Query: 138 EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE 197
            +G +GL  L  G +   D  FF +      +      K+F D L + +     +     
Sbjct: 111 NLG-KGLFTLIPGENPFFDEIFFRDQKDKFFQISTQLLKIF-DELVLGISYQNSFLELLS 168

Query: 198 SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
             ++  A   ++P V  N + + + +    + +L  + +    +Q D   +T D++    
Sbjct: 169 ENIIDFANHFQIPYVPVNKTCYDTFQAQPTYQILTQMENKKNDNQTDLSFLTKDNF---- 224

Query: 258 SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
            +         +      ++     +   +                +   ++ L+  +  
Sbjct: 225 -DSTYNAQTHKKMFIYLKKLIFSIKYQNYLPQKFFLPSFVDFLQPQKITAKDYLKQISYE 283

Query: 318 GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
           GL   +   +         Y+QRLD EL +IA M++  YFLIV D +++AKK  I VGPG
Sbjct: 284 GLRQYINFKSPKYT----KYQQRLDQELKIIADMEYDNYFLIVGDVVRYAKKQGILVGPG 339

Query: 378 RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
           RGS +GS+  + L IT+IDPL++ L+FERFLNP R +MPD D+DF  + RD +I+YV  K
Sbjct: 340 RGSSSGSLVCFCLQITEIDPLQYELIFERFLNPQRKNMPDIDLDFPDNTRDLIIQYVCQK 399

Query: 438 YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
           YG + VA IITFG   ++ A+ +          +      L   D       + +     
Sbjct: 400 YGTKHVASIITFGRFVSQKAIINELVKFMPTVKEFQTKRVLAYLDKKSTYQKETLDL--- 456

Query: 498 FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
                     +  LL ++  +EG+ R   TH AGI++   PL Q++P+ +   ++L  TQ
Sbjct: 457 ---------QMKNLLTMASYIEGMPRFTGTHPAGIILSQIPLYQIIPLQKGTHNNLQQTQ 507

Query: 558 FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGT 617
           +    +E  GL+K DFLGL++LTL+ + +  + +   K  L  IP +D +T+ LL    T
Sbjct: 508 WEASDLESIGLLKIDFLGLRSLTLINQMVLAIQKNNFKFSLFKIPLNDKKTFELLQQGKT 567

Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
           +GIFQLES   +  L+ M P   ED+IAL++L RPGPID+  ++   ++ K       PL
Sbjct: 568 IGIFQLESYNAKIFLQKMMPQKFEDLIALLALNRPGPIDSFNMFLKNRHQKTT-TFFSPL 626

Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
           ID +L+ T G+I+YQEQ+MQI  + + YSL++AD+ RRA+ KK K+ + ++K  FI+ + 
Sbjct: 627 IDFILQPTYGIILYQEQIMQILAVFAKYSLAQADLFRRAISKKEKDLLLQEKNNFIAQSK 686

Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
           + G   TIA  I++ + KFA+YGFNKSH+ AY++ISY+ A++K ++ + F+   +   + 
Sbjct: 687 EQGRDLTIAYKIYDYILKFANYGFNKSHSVAYSLISYRMAYLKANHFIAFVITLLNDAIG 746

Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
           +  + +   ++  Q  I I PP + +    +   DN+++  L  IKG+  +  + +M+  
Sbjct: 747 DTSQTEILLKEVIQKGIIIEPPHIFSSQDKYYFQDNKLFLPLTIIKGINVSFCQELMKKQ 806

Query: 858 AD--KPFD------------SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +  K +             S + F  ++    L   +L +L+FAGA D  G +R  L  
Sbjct: 807 KNLIKEYQKLTKTSQSPLYYSFKTFKQQL-FPFLTEPLLTNLIFAGAFDKMGLNRNTL-- 863

Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
                             +        K         E             +++ LGF  
Sbjct: 864 ------------------EQNKDLKEVKYYPYSDYEPEIHPELPLQELVIKQKKALGFGL 905


>gi|99034688|ref|ZP_01314628.1| hypothetical protein Wendoof_01000559 [Wolbachia endosymbiont of
            Drosophila willistoni TSC#14030-0811.24]
          Length = 718

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 290/607 (47%), Positives = 405/607 (66%), Gaps = 15/607 (2%)

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD VI YVQ KYG   VAQIITFG LQA+A LRDVGR LQMPYSQVD++ K++P +P +P
Sbjct: 1    RDLVIDYVQKKYG--YVAQIITFGKLQARAVLRDVGRVLQMPYSQVDKISKMVPFNPVNP 58

Query: 487  VS-LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
            V+  QAI  D   ++ R +D  + +LL+IS +LEG+YRH STHAAGIVI D+ L   VP+
Sbjct: 59   VTLSQAIEFDQNLQKERDSDEVIAKLLDISLRLEGIYRHVSTHAAGIVICDQKLENFVPV 118

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
            Y D  S LP+TQ++MK++EKAGLIKFDFLGL TLTL+      + + G K+D+S +P +D
Sbjct: 119  YYDPNSALPITQYSMKYVEKAGLIKFDFLGLGTLTLIDHVCRLINRDGKKIDISSVPLND 178

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +TY +L++  ++G+FQLESSGMR+AL  ++PDCIEDIIAL+SLYRPGP+DNI  Y  RK
Sbjct: 179  QKTYEILSSGDSIGVFQLESSGMREALIKLKPDCIEDIIALISLYRPGPMDNIPTYVARK 238

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G EK   IHPL++ +LKET GVIIYQEQVM+IA++LSGYSL+EAD+LRRAMGKKIKEEM
Sbjct: 239  HGLEKPDYIHPLLEEVLKETFGVIIYQEQVMEIARILSGYSLAEADLLRRAMGKKIKEEM 298

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +KQ+E FI GA+KNG+    A  IF+L+AKFA YGFNKSHAAAYAVISYQTA++K +YP+
Sbjct: 299  NKQRELFIQGATKNGVDYDRASYIFDLVAKFAGYGFNKSHAAAYAVISYQTAYLKANYPL 358

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            EF  A M L +D+ +K+  F   A+   + ++ P +N    +F + D RI Y +AA++ V
Sbjct: 359  EFFTALMNLNIDDRDKLNLFYHAAKFSGVTVLSPDINKSQAEFSIEDERIRYGIAALRNV 418

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            G + A  I+   +      + +F        +N+R LESL+ +GA D    +R QL +S+
Sbjct: 419  GFSIAEGIVNVRSSAC-KDIWEFIQN-SGHIINKRALESLIKSGAFDSVHKNRKQLYESM 476

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            D +  +A   +++R +    +F         K  LE     +   + E+E   LGFY + 
Sbjct: 477  DTLIYFANKNKQDRESSQAALFGSLDVL---KPKLENVEDFDEEEKLEHELFSLGFYLTN 533

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
            HPL+ ++ +L K+ I    E          + A ++++ + + + +G R   +T S+P  
Sbjct: 534  HPLEKFRTLLEKLNIGFIGE------NRTAKTAGVILNARMRTSERG-RFVILTLSDPHN 586

Query: 1026 EYEANFF 1032
              E  F+
Sbjct: 587  ISEIAFY 593


>gi|255038661|ref|YP_003089282.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053]
 gi|254951417|gb|ACT96117.1| DNA polymerase III, alpha subunit [Dyadobacter fermentans DSM 18053]
          Length = 989

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 231/1032 (22%), Positives = 417/1032 (40%), Gaps = 99/1032 (9%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  HS +SL  G +  + +L     +    +A+TD NN    L F + A    I+PI+G 
Sbjct: 3    LNCHSYFSLRFGTIPEDELLAMCRENGYDCVALTDINNTSGCLNFVRMAPRFDIKPIVGI 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                                      V L     G+Q L   +S   L         +  
Sbjct: 63   DF----------------RNGVTQQFVALAKNNAGFQVLNAYLSAQKLAG-------LPF 99

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
               +    E + ++                    EK     ++ FG   Y+ +   +  D
Sbjct: 100  PD-RAPEMEHVAVIYP-----------------FEKLNKERREQFGPNEYIGISM-QELD 140

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +   S + +      +         F +++D+ AH +L A+  +T++S+        +  
Sbjct: 141  KLHYSPLHRFRDRLVIR----QPVTFRNKKDFNAHRLLRAIDENTLLSKLAASETGNESE 196

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
               +++++       +     +E  R+     ++          +      K EE + + 
Sbjct: 197  QIVQAKVLEYHFKQKD-FRIILENTRKLMDECEIRFTFGNEREHQNLKIFGKNEEEDFKK 255

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
                      A G         +   R+  EL++I +  F  +FL+  D + +A++    
Sbjct: 256  LR---SMTYQALGYRYGDNITDEIFDRIAKELDMIRQQNFVPFFLVNHDIVSYARRKGYY 312

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
               GRGSGA S+ AY L IT++DP+   L FERF+N  R + PDFDIDF    R++V RY
Sbjct: 313  Y-VGRGSGANSIIAYLLNITNVDPIELDLYFERFINLHRKNPPDFDIDFSWRDREDVTRY 371

Query: 434  VQNKYGHE-RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            + + YG   + A + T+ + Q  +A+R++G+   +P  ++D L              + +
Sbjct: 372  IFDTYGKNGQAALLATYSTFQHNSAVRELGKVFGLPAYEIDALSNG-------KYDPKKL 424

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
               S                    +      H S HA GI+I  RP+             
Sbjct: 425  DQLSGLVIRYADY----------LQANNQPNHLSIHAGGILISQRPMHYFTATDVPP-KG 473

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-----VKVDLSLIPFDDHE 607
             P TQF+M   E  GL K+D LG + L  ++++L+ +           ++       D +
Sbjct: 474  FPTTQFDMVIAEDVGLNKYDILGQRGLAKIKETLEIIRYNRPEAPDFDINDVRKFKTDPK 533

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRK 665
               L+     +G F +ES  MR  L+ ++ D    ++A  S+ RPG   + ++  Y  R 
Sbjct: 534  INDLIRQAQCIGCFYVESPAMRMLLKKLEVDNYLGLVAASSIIRPGVAKSGMMREYILRH 593

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI--KE 723
               EK    HP +  +++ET G+++YQE V+++A   +G +L EADV+RR M  K   +E
Sbjct: 594  RHPEKRSEAHPRLLELMEETYGIMVYQEDVIKVAHYFAGLTLGEADVIRRGMSGKFRGRE 653

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            E ++ K+++       G  + + ++++  +A FA + F K H+A+YAV SYQT ++KT++
Sbjct: 654  EFERVKKKYFKNCRSKGYDEAMTMDVWNQIASFAGFAFAKGHSASYAVESYQTLFLKTYF 713

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P+EF+ A +          + +  +AR     +  P VN       +  ++IY  +  + 
Sbjct: 714  PLEFMVAVLN-NGGGFYAPELYIHEARMLGAHVHAPCVNHSEAHATIEGDQIYLGMQFLN 772

Query: 844  GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             +   T   I+ A   D  F SL DF  RV    ++   L  L+   A    G  +  LL
Sbjct: 773  DLEAKTIDRILAARGQDGAFTSLNDFLDRVP---ISIEQLTILIRIDAFRFTGVDKKTLL 829

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
                  + + +          + +F  E   F     L +F        ++    +LGF 
Sbjct: 830  W-----KAHFRLSTTPTKAPQKQLFQAEVRDF----KLPEFHSSILDDAYDQ-VELLGFP 879

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
                P ++ K  L K       +    +    +     +V+ +  +T +G  + + TF +
Sbjct: 880  LCS-PFNLLKNPLPK--SIMANDLHNYVN-QEVVQYGYLVALKNTRTARGESMQFGTFLD 935

Query: 1023 PAKE-YEANFFP 1033
                  +   FP
Sbjct: 936  YEGHFIDTVHFP 947


>gi|193216861|ref|YP_002000103.1| DNA polymerase III subunit alpha [Mycoplasma arthritidis 158L3-1]
 gi|193002184|gb|ACF07399.1| DNA polymerase III subunit alpha [Mycoplasma arthritidis 158L3-1]
          Length = 999

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 308/1033 (29%), Positives = 486/1033 (47%), Gaps = 90/1033 (8%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            +HL   S YS L+  + L+N+++    +    +AIT+  N FS   F +K  A  ++ I 
Sbjct: 6    IHLN--SIYSFLQSTIQLDNLIENALKNNVEYLAITERGNFFSFAPFYEKCQAHKLKSIF 63

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G  +DI++Q                   +L      G   L  L   +    +       
Sbjct: 64   GLDVDIEIQGKP-------------YRFILHAKNNTGLFELFNLSYDILSNKKLY----- 105

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             L  +     + +I +                 +  ++ L        D  Y++L  H  
Sbjct: 106  -LDDVA--NNKNIIFI---------EHVLDGYYKKTKQVLDY------DNHYISLGLHEV 147

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
             +         +       L++ +N++          D         +    +    +  
Sbjct: 148  SENAVF-----INENLHKILISHHNAIM---------DFDDNSLIKILALMNEDAINSNA 193

Query: 252  HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +               + +  T E+ + C F L  +  ILP+F  +   D  K  +  +
Sbjct: 194  TFDILEFGFAVATDLEKKLITKTNELMQGCYFELPKNDYILPKFQNELNLDSTKYLQTLI 253

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            +N  V   E               +Y+ RL  E+++I ++KF  YFLI+ D++ WAKKN 
Sbjct: 254  KNNIVKRFEKSAWN---------DEYKLRLLHEMSIIEKLKFEDYFLIIQDWVNWAKKNK 304

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
            I +GPGRGS AGS+ +Y L IT++DPL++ L+FERFLNP+R+SMPD DID   +RR EVI
Sbjct: 305  IAIGPGRGSAAGSLVSYILGITNVDPLKYGLIFERFLNPERVSMPDIDIDVQDNRRQEVI 364

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             Y+  KYG  +VA I+TF SL  K+A+RDV R   +  + ++ + KLI       +    
Sbjct: 365  EYLNKKYGSSQVANIVTFASLGKKSAIRDVMRTYDVSPAMINEVSKLIGLKEGSLLEEYQ 424

Query: 492  IADDSRFREARLADPSVDR---LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                       L     +    +L  + +LEG YR   THAAG++I  +P++Q++P Y+ 
Sbjct: 425  SNKKFALALNSLNKEDANFSTKILNYASQLEGFYRQTGTHAAGVIIAPKPINQIIPTYKI 484

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHE 607
                +  TQ +M+++E  GL+K D LGLKTLT +Q+ L  + +      DL+ I ++D  
Sbjct: 485  E-DGIQQTQVSMEYLEHFGLLKMDILGLKTLTTIQEVLLQIKKTKNLDLDLAKIKYEDQL 543

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T+ LL T  T+GIFQLES GM +AL+ +  D   DI+A +SLYRPGP+DN+ VY  RKN 
Sbjct: 544  TFDLLNTGSTVGIFQLESFGMTKALKQIHVDSFNDIVATISLYRPGPMDNLKVYAKRKNA 603

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             E I SI    D ++K T G+IIYQEQ+MQI Q ++  S S+AD +RR + KK  +EM  
Sbjct: 604  HEPIPSISKAYDEIVKGTYGIIIYQEQIMQIVQAVANLSFSQADNIRRIISKKKVDEMHA 663

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             K  F++ A KNG S+  A+NIFEL++KFADYGFNKSHA +YA+ISYQ A++K HYP+EF
Sbjct: 664  VKTNFVNSAIKNGYSEKDALNIFELISKFADYGFNKSHAVSYAMISYQMAYLKAHYPLEF 723

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
             +A ++      E I +F  +A+   I+I+ P +N    +  + +  I   L  IKG+G 
Sbjct: 724  YSAIISSAHGAHETIARFSAEAKSLGIEIISPDINLSNQNATILNKAIVLPLNMIKGIGP 783

Query: 848  TTARHIMEASA-DKPFDSLED-FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
             T R I+E    + P+ +    F   +  K      LE L+ A AL  F  ++  +L  +
Sbjct: 784  ETVRLILEDRKINGPYRNFLHLFVCLMHIKNFGLANLEILIKANALRTFNINQATMLNEI 843

Query: 906  DNIQKYAQWVEKNRTNKHENI--FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG--- 960
                   + + K +   + +   F  E   +S     +     N     +NE   LG   
Sbjct: 844  AKENSDIRLLFKIKKTDNSSPKDFLEEINNYSPSEHFKV----NPKEEAQNEAYYLGQVY 899

Query: 961  -FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             F      +  Y+    ++             G    +       ++K +        V 
Sbjct: 900  NFNL----VKKYELEGNRLANIHL--------GTEHIIYVYCSDVKRKISTNDKEYYVVV 947

Query: 1020 FSEPAKEYEANFF 1032
              + + +     F
Sbjct: 948  LEDSSMQLILRIF 960


>gi|319777594|ref|YP_004137245.1| DNA polymerase iii alpha subunit [Mycoplasma fermentans M64]
 gi|238810015|dbj|BAH69805.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|318038669|gb|ADV34868.1| DNA polymerase III alpha subunit [Mycoplasma fermentans M64]
          Length = 967

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 272/1033 (26%), Positives = 459/1033 (44%), Gaps = 118/1033 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V+L   S Y+ L+  + +++++        PA+ ++D NN+F    F +      I+ I
Sbjct: 4    YVNLYNTSEYTFLDSLIRIDDLVRLSKEHNLPAVVLSDRNNMFGLGAFMEACLKYDIKGI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  LD+D                     ++L    +GYQ++ +L+              
Sbjct: 64   IGVDLDVDN-----------------YRFIVLAKNYQGYQKINQLI----------YQKS 96

Query: 131  ICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            I  +  + E+    LI+L     G   +    N    ++              Y+N    
Sbjct: 97   INKAIEISELWNPNLIVLDHPRYGYYAQT-KDNKYSASK------------NYYIN---- 139

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                          +    LP    N+ L    + +EA D         + + +      
Sbjct: 140  --------------SSDASLP----NSILIKENKLFEASDNETLNYLQKLGNLE------ 175

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                    ++  + + D        ++          V  P     +    ++ +   E 
Sbjct: 176  -------ETKHYANYFDEVNVDSEIIDRIYSIINECNVIFPKKALHLAPFQNNDEATNEK 228

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
               +   AG +   ++       +  D+ +RL++E NVI ++ +  YFLI+ D + WAK 
Sbjct: 229  LFVSLLKAGAKRLASEL-----KNYPDWNKRLEYEFNVIKKLGYINYFLIIQDLVNWAKS 283

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I +GPGRGS AGS+ +Y L IT+I+PLR++LLFERFLNPDR+S PD DID   DRR E
Sbjct: 284  QKIAIGPGRGSAAGSLVSYLLNITEINPLRYNLLFERFLNPDRVSWPDIDIDIQDDRRFE 343

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V  Y+Q KYG ++   I TF ++ AK A+RD+GR + +    ++R+ K I +D       
Sbjct: 344  VFEYLQKKYGVDKTGLISTFQTIGAKMAIRDMGRVMGISLIDINRISKTIKSDNLTDAYK 403

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
              I         ++   +   L + + K+EGL R  S HAAG +I    L   VP+    
Sbjct: 404  NDID-------FKIEMDNYPELYKHALKIEGLPRQQSFHAAGFIIAKDKLFNYVPVCLSN 456

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL---SLIPFDDH 606
              +    Q  M +IE  GL+K D LGL+TLT +Q     L +      L        +D 
Sbjct: 457  LDNYQQVQVPMNYIESYGLLKIDLLGLRTLTEIQLIEKSLEENQKFDYLVKNDPQILNDP 516

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  +L    T GIFQLES GM++ ++ +  +  +D+ A++SL+RPGP+D I  Y   K 
Sbjct: 517  KTLTMLNLGFTEGIFQLESPGMKKTIQKVVLNSFDDLYAIISLFRPGPMDFINDYATNKK 576

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             ++ I  IHP  D ++  T G+I+YQEQ+MQIAQ + G + ++AD+LR+A+ KK + ++ 
Sbjct: 577  NQKLIKKIHPDYDKVVANTYGIIVYQEQIMQIAQSIGGMTFAQADLLRKAISKKSEVDIK 636

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +  F   A K GI++ I   I+  + KF  YGFNKSHA +YA ++ + ++ K  Y   
Sbjct: 637  KYRSIFFENAIKKGINEKIINAIYNNIEKFGLYGFNKSHAVSYAYLTMKMSYYKARYANL 696

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F ++ +T        I K+  + ++ N  +  P++        V ++ IY     IKG G
Sbjct: 697  FYSSLITNAAGAQATINKYVAEIKKLNFPVYSPNILHSSNKCIVTNDGIYLPFEMIKGFG 756

Query: 847  TTTARHIME-ASADKPF-DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
                  I+   + + PF  +L D   R+    +    +E L+ A A   FG+  M+ + S
Sbjct: 757  AEGVNKIVADLNENGPFQKNLIDTMLRLRFAGIKDAAMEILIKANAFRDFGH--MKYILS 814

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG---- 960
             DN  K    V  + +   E +   +K  + D I  ++ +  + +   + E  +LG    
Sbjct: 815  CDNQIKDIFKVLSSHSTYKEALKDIQKMGYYD-IVFDQENERDINYEMDYEIALLGELYN 873

Query: 961  -FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             F  S     +Y+   +                  + +AA V   ++    +G     + 
Sbjct: 874  AFSTS-----IYEAKYKNK-------LNTITSSIPVSVAAEVADLRRP---RGKEFSVLE 918

Query: 1020 FSEPAKEYEANFF 1032
              +   +    FF
Sbjct: 919  LRDSTAKI--TFF 929


>gi|300778347|ref|ZP_07088205.1| DNA-directed DNA polymerase III alpha subunit [Chryseobacterium gleum
            ATCC 35910]
 gi|300503857|gb|EFK34997.1| DNA-directed DNA polymerase III alpha subunit [Chryseobacterium gleum
            ATCC 35910]
          Length = 1016

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 254/1032 (24%), Positives = 452/1032 (43%), Gaps = 116/1032 (11%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  HS +SL  G LS+++++ + +A     + +TD N +    EF +K  + GI+P+ G 
Sbjct: 3    LNCHSYHSLRYGTLSIDDLVSQASALGINELVLTDINTITGVYEFKKKCESQGIKPVAGI 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++                   +    + +     G   + ++++  Y  D  +   R  L
Sbjct: 63   EV----------------RKGSKLLYIAIAKEFAGLGEVNKMLTE-YNCDGTELPERPNL 105

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
                       I+ +             N+ +  ++             Y+ +       
Sbjct: 106  DH-------NFIIYS-----------LQNNPEGLKE-----------NEYIGI------- 129

Query: 194  RYRESQVVQLAYTHEL--PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTP 250
            R  E  ++  +    L   +V      F ++++Y  H +L A+ ++T++S   +      
Sbjct: 130  RQEELNLLIRSEYRNLISKMVILQPVTFGTKKEYNLHRILRAIDNNTLLSLLPENEICHK 189

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              Y K+   ++  F   P+ +ENT  +  +CSF      P   +       D  K     
Sbjct: 190  SEYFKSPQSLLDEFKYYPQIIENTKRLLSQCSFDFAFSTPRNKKHYTGTKADDLK----L 245

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L   A AGLE          G   +  + R++ EL VI  + FSGYFLI  D IQ++   
Sbjct: 246  LTRLAYAGLEK-------RYGRKNEQAKLRVEKELKVIDELDFSGYFLITWDIIQYSNSM 298

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
                  GRGSGA S+ AY + ITDI PL   L FERFLN +R S PDFDID+   +RD +
Sbjct: 299  GFM-HVGRGSGANSIVAYCIGITDICPLELDLYFERFLNLNRKSPPDFDIDWSWQKRDII 357

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + Y+ N+YG + VA   T    + ++ +R+VG+A  +P  ++D L K   +         
Sbjct: 358  LDYIFNRYGKDYVAFCGTNVEFKYRSIIREVGKAFGLPKEELDELSKNPES--------- 408

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                          D  V ++ +  + LE      S HA GI+I + PL+    +     
Sbjct: 409  -----------VFRDEIVQKVQKYGKLLEKFPNQRSMHACGILISEEPLTNFTALEMPP- 456

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF-LAQRGVKVDLSLIPFDDHE-- 607
               P+ Q++M   E+ G  K D L  + L  ++ ++     +RG+KVD+        E  
Sbjct: 457  KGFPIVQWDMYMAEELGFEKLDILSQRGLGTIKDTVRLIEEKRGIKVDIKDTALSKDEKI 516

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRK 665
                L+   T+G F +ES  MR  L  ++ D  + ++A  S+ RPG   + ++  Y  R 
Sbjct: 517  CNEFLSQGRTIGCFYIESPAMRGLLRRLKCDNYKVLVAASSIIRPGVAQSGMMREYIFRH 576

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N   +    H + +  L ET G+++YQE V++IA    G S ++ D+LRRAM  K +   
Sbjct: 577  NNPNQFEYFHKVFEEELGETYGIMVYQEDVIKIALHFGGLSAADGDILRRAMSGKYRSLE 636

Query: 726  D--KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            D  K K  F     + G S+ ++  ++  +  FA Y F K+H+A+YAV SYQ+ ++K +Y
Sbjct: 637  DLQKVKNHFFESCRELGHSEELSREVYRQIESFAGYSFCKAHSASYAVESYQSLYLKVYY 696

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
            P+EF+ +++   M    + + +  +A+    +I+ P VN    +  +  + IY  L  ++
Sbjct: 697  PLEFMVSAIN-NMGGFYRTEVYVHEAKMSGGKILNPCVNKSEYETTIYGDNIYLGLMLLE 755

Query: 844  GVGTTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             V +  A+ I  E      + S+EDF  R+    +    L+ L+F GA    G  + +LL
Sbjct: 756  KVESKIAQLIPEERRKSGDYLSMEDFIKRIP---VGIETLQILIFIGAFRFTGIPKNELL 812

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
                 +    +   + +T     +F     T      L +    N      +E  +L F 
Sbjct: 813  LKARVLLGEFKPEHRLQT-----LFD----TPVKDFKLPELKR-NVFEDAFDEIEILSFP 862

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
             S  P D+ +   +  G     + V       +++ A +++++   T++G+ + + T+ +
Sbjct: 863  VSCTPFDLLQT--KYKGQIMASDLVKY-HKREVKMLAYLIARKHVPTKRGT-MFFGTWID 918

Query: 1023 PAKE-YEANFFP 1033
                 ++   FP
Sbjct: 919  VEGNYFDTAHFP 930


>gi|332170372|gb|AEE19627.1| DNA polymerase III, alpha subunit [Krokinobacter diaphorus 4H-3-7-5]
          Length = 1010

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 236/1035 (22%), Positives = 430/1035 (41%), Gaps = 110/1035 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  HS +SL  G +S   +LD    +     A+TD NN    L F ++A    I+PIIG 
Sbjct: 3    LNNHSYFSLRYGTISEEELLDLAIHEGCNHFALTDINNTSGCLNFVRRAKEKNIKPIIGV 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                                 T    V L    +G+  +   +S+ +L ++   +     
Sbjct: 63   DF----------------RNNTKQCYVALAMNNQGFLEINNYLSK-HLHNK---TPFPD- 101

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
               Q    + +I++                    E  +   K  F    Y+ +   R  D
Sbjct: 102  ---QAPHFQNVIIIYP-----------------FENVMELGKTTFTSNEYIGV---RAKD 138

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDH 252
             Y+  +   L+      LV  +   F  + D+  H +L A+  + ++S      + +P+ 
Sbjct: 139  IYKL-KFSSLSS-LTKKLVILHTVSFRDKRDFNTHRLLRAIDTNVLLSTLPHTDQGSPND 196

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
             + +R E+  +F D P  +ENT  + + C            + +       + + +  L 
Sbjct: 197  LMYSRKEIAQVFKDYPSLIENTNNLLQECKIDFNFSKDKPSQNLTTLLKSPEADYKKLL- 255

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                 GL+                 + RL  EL++I R+ +  +FLI    I++A+  + 
Sbjct: 256  ELCEKGLK-------DRYEVVDNIIKGRLKKELDLIKRLDYVAFFLINWKIIEYARSKDY 308

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                GRGSGA S+ AY L ITD+DP+   L FERF+N  R + PDFDIDF    R++V  
Sbjct: 309  YY-VGRGSGANSIVAYLLRITDVDPIELDLYFERFMNLYRATPPDFDIDFSTWDREDVTD 367

Query: 433  YVQNKYG-HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            Y+  ++  + +VA + ++ + +   A+R++G+   +P  ++D+L               +
Sbjct: 368  YIFKEFKGNHQVALLGSYVTFKHSGAVRELGKVFGLPKYEIDKLSDGRY-------DPNS 420

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
            + D  +             +L+ +Q L G   + S HAAGI+I  +P+            
Sbjct: 421  LDDIKKL------------VLKYAQVLHGRPNYTSIHAAGILISSKPIHYFSATNLPP-K 467

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP-----FDDH 606
              P  QF+M   E  GL KFD LG + L  ++ ++  +     +V L  I      F D 
Sbjct: 468  GFPTVQFDMHIAEDVGLYKFDILGQRGLGKIKDAVAIIKHNNPRVALPDIHNAKQFFTDD 527

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN---N 663
                +++    +G F +ES  MR  L+ +       ++A  S+ RPG   + ++      
Sbjct: 528  RINEMISQADCIGCFYVESPAMRMLLKKLGVRDYLTLVAASSIIRPGVSKSGMMREYILR 587

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             K+ K      HP++  ++ +T GV++YQE V+++A   +G  L EADVLRR M  K + 
Sbjct: 588  HKDPKRAEREGHPVLLRIMPDTYGVMVYQEDVIKVAHHYAGLDLGEADVLRRGMSGKYRS 647

Query: 724  EMDKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              +  +  E+F +     G S  +   ++  +  FA Y F K H+A+YAV SYQ+ ++K 
Sbjct: 648  REEFLQVKEKFKNNCLAKGESIAVVNEVWRQIESFAGYAFAKGHSASYAVESYQSLYLKC 707

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            ++P+E++ A++        + + +  +A++    + PP +NT  +   +    IY     
Sbjct: 708  YFPLEYMVATIN-NGGGFYRTETYVHEAKKKGAIVHPPCINTSDIQTTIHGKDIYLGFQH 766

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            ++         I+ A  D PF SL+DF  RV    ++   L+ L+   A      ++  L
Sbjct: 767  LQTFEKKNIVLIINARIDGPFKSLDDFLERVP---ISLDQLDLLIRVEAFRSIKDNQRSL 823

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFS-VENSSVRFENEQRVL 959
            L        + +   +   +  + +F     +F   +  +       +           L
Sbjct: 824  LWE-----AHYKNNARPSIDNQKELFKVSITSFKLPEFYIPDVEKAFDQIEIL-----SL 873

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
              Y    P  + + I     IK   + +       + +   +V+     T  G+R+ + T
Sbjct: 874  SLY---DPFILLESI---PTIKILAKDLYLHLNKTVEIYGYLVTANNTGTSNGNRMSFGT 927

Query: 1020 FSEPAKE-YEANFFP 1033
            F +   +  +   FP
Sbjct: 928  FLDYNGDWIDTVHFP 942


>gi|317472886|ref|ZP_07932192.1| DNA polymerase III alpha subunit protein [Anaerostipes sp. 3_2_56FAA]
 gi|316899606|gb|EFV21614.1| DNA polymerase III alpha subunit protein [Anaerostipes sp. 3_2_56FAA]
          Length = 661

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 195/540 (36%), Positives = 299/540 (55%), Gaps = 21/540 (3%)

Query: 514  ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
            +S++LEGL RHAS HAAG+VIG   + + VP+ +    D   TQF M  IE+ GL+K DF
Sbjct: 1    MSRRLEGLPRHASMHAAGVVIGKDSIDEFVPLAKGA-DDAVTTQFTMTTIEELGLLKMDF 59

Query: 574  LGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            LGL+TLT++Q ++  + +R     D++ I  +D + Y +++   T G+FQLES GM+  +
Sbjct: 60   LGLRTLTVIQDAVHLIEKREGKPFDINKIDTEDPKVYEMISQGRTEGVFQLESGGMKTFM 119

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
            + ++P+ +E+IIA +SLYRPGP+D I  Y   K  K+ I    P ++ +LK T G I+YQ
Sbjct: 120  KELKPESLEEIIAGISLYRPGPMDFIPRYVKGKVDKDSIRYDCPQLEKILKPTYGCIVYQ 179

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF--------ISGASKNGISKT 744
            EQVMQI   L+GY+L  +D++RRAM KK  + M ++++ F        I G  KNGI + 
Sbjct: 180  EQVMQIVMELAGYTLGRSDLVRRAMSKKKGDVMVRERKNFVYGNEKEGIPGCIKNGIDEK 239

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
             A +I++ +  FA Y FNKSHAAAYAV++YQTA+++ HY  EF+AA +T  + N  K+ +
Sbjct: 240  TANHIWDEMLDFAKYAFNKSHAAAYAVVAYQTAFLRCHYQKEFMAALLTSVLGNTNKVSE 299

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFD 863
            +    R+  I+I+PP +N     F V D  I Y L+AIK +G      I+        + 
Sbjct: 300  YIYACRKMGIKILPPDINKGEGAFSVDDGCIRYGLSAIKSLGKPVIEEILRERSEGGSYK 359

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
            SL D   R+ SK++N+R +ESL+ +GALD  GY+R Q +    +I +  Q   K+  +  
Sbjct: 360  SLRDLIERLSSKEMNKRTVESLIKSGALDELGYTRKQQMFVYASILESIQKERKHEISGQ 419

Query: 924  ENI--FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
             +I  F  E    + +I        +   R   E+ VLG Y SGHPL+    IL ++   
Sbjct: 420  MSILDFMSEDQQKNFEIEYPDVGEFDKEQRLAMEKEVLGIYVSGHPLEDDVEILERLTTA 479

Query: 982  GYEESVA--------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +  A                +  ++   + K TR    + ++T  +     E   FP
Sbjct: 480  STADFTAEEDTGQPVLRDKQTCIIGGIISDMKVKLTRTNQNMAFLTLEDLMGTVEVIVFP 539


>gi|308190227|ref|YP_003923158.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER]
 gi|307624969|gb|ADN69274.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER]
          Length = 967

 Score =  360 bits (924), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 271/1033 (26%), Positives = 459/1033 (44%), Gaps = 118/1033 (11%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            +V+L   S Y+ L+  + +++++        PA+ ++D NN+F    F +      I+ I
Sbjct: 4    YVNLYNTSEYTFLDSLIRIDDLVRLSKEHNLPAVVLSDRNNMFGLGVFMEACLKYDIKGI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  LD+D                     ++L    +GYQ++ +L+              
Sbjct: 64   IGVDLDVDN-----------------YRFIVLAKNYQGYQKINQLI----------YQKS 96

Query: 131  ICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            I     + E+    LI+L     G   +    N    ++              Y+N    
Sbjct: 97   INKDIEISELWNPNLIVLDHPKYGYYAQT-KDNKYSASK------------NYYIN---- 139

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                          +    LP    N+ L    + +EA+D         + + +      
Sbjct: 140  --------------SSDASLP----NSILVKENKLFEANDNETLNYLQKLGNLE------ 175

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                    ++  + + D        ++          V  P     +    ++ +   E 
Sbjct: 176  -------ETKHYANYFDEVNVDSKIIDRIYSIINECNVIFPKKALHLAPFQNNDEATNEK 228

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
               +   AG +   ++       +  ++ +RL++E NVI ++ +  YFLI+ D + WAK 
Sbjct: 229  LFVSLLKAGAKRLTSEL-----KNYPEWNKRLEYEFNVIKKLGYINYFLIIQDLVNWAKS 283

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
              I +GPGRGS AGS+ +Y L IT+I+PLR++LLFERFLNPDR+S PD DID   DRR E
Sbjct: 284  QKIAIGPGRGSAAGSLVSYLLNITEINPLRYNLLFERFLNPDRVSWPDIDIDIQDDRRFE 343

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V  Y+Q KYG ++   I TF ++ AK A+RD+GR + +    ++R+ K I +D       
Sbjct: 344  VFEYLQKKYGVDKTGLISTFQTIGAKMAIRDMGRVIGISLIDINRISKTIKSDNLTDAYK 403

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
              I         ++   +   L + + K+EGL R  S HAAG +I    L   VP+    
Sbjct: 404  NDID-------FKIEMDNYPELYKHALKIEGLPRQQSFHAAGFIIAKDKLFNYVPVCLSN 456

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL---SLIPFDDH 606
              +    Q  M +IE  GL+K D LGL+TLT +Q     L +      L        +D 
Sbjct: 457  LDNYQQVQVPMNYIESYGLLKIDLLGLRTLTEIQLIEKSLEENQKFDYLVKSDPQILNDP 516

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +T  +L    T GIFQLES GM++ ++ +  +  +D+ A++SL+RPGP+D I  Y   K 
Sbjct: 517  KTLTMLNLGFTEGIFQLESPGMKKTIQKVVLNSFDDLYAIISLFRPGPMDFINDYATNKK 576

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
             ++ I  IHP  D ++  T G+I+YQEQ+MQIAQ + G + ++AD+LR+A+ KK + ++ 
Sbjct: 577  NQKLIKKIHPDYDKVVANTYGIIVYQEQIMQIAQSIGGMTFAQADLLRKAISKKSEVDIK 636

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +  F   A K GI++ I   I+  + KF  YGFNKSHA +YA ++ + ++ K  Y   
Sbjct: 637  KYRSIFFENAIKKGINEKIINAIYNNIEKFGLYGFNKSHAVSYAYLTMKMSYYKARYANL 696

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F ++ +T        I K+  + ++ N  +  P++        V ++ IY     IKG G
Sbjct: 697  FYSSLITNAAGAQATINKYVAEIKKLNFPVYSPNILHSSNKCIVTNDGIYLPFEMIKGFG 756

Query: 847  TTTARHIME-ASADKPF-DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
                  I+   + + PF  +L D   R+    +    +E L+ A A   FG+  M+ + S
Sbjct: 757  AEGVNKIVADLNENGPFQKNLIDTMLRLRFAGIKDAAMEILIKANAFRDFGH--MKYILS 814

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG---- 960
             DN  K    V  + +   E +   +K  + D I  ++ +  + +   + E  +LG    
Sbjct: 815  CDNQIKDIFKVLSSHSTYKEALKDIKKMGYYD-IVFDQENERDINYEMDYEIALLGELYN 873

Query: 961  -FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             F  S     +Y+   +                  + +AA V   ++    +G     + 
Sbjct: 874  AFSTS-----IYEAKYKNK-------LNTITSSIPVSVAAEVADLRRP---RGKEFSVLE 918

Query: 1020 FSEPAKEYEANFF 1032
              +   +    FF
Sbjct: 919  LRDSTAKI--TFF 929


>gi|311747904|ref|ZP_07721689.1| putative DNA polymerase III alpha subunit [Algoriphagus sp. PR1]
 gi|126575898|gb|EAZ80208.1| putative DNA polymerase III alpha subunit [Algoriphagus sp. PR1]
          Length = 985

 Score =  360 bits (924), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 238/1036 (22%), Positives = 421/1036 (40%), Gaps = 109/1036 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            FV    HS +S   G LS++ ++++  + +  A A+TD N       F + A   GI P+
Sbjct: 2    FV--NCHSHFSFKYGTLSVDALIEEAKSKRLDAFALTDINCTAGVFPFIRAAQRVGIHPV 59

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG                           + L    EG+  L   +S  +L+ +     R
Sbjct: 60   IGIDF----------------RNGNQQQYIGLARNQEGFFELNSHLSD-HLVHKKPFGKR 102

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                   +     +I                +      +             Y+ +    
Sbjct: 103  AP-----DFDHCFII------------YPLPDRPFTLRE-----------NEYIGVHP-- 132

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVT 249
                     +    +  +  LV      F S+ D+ AH +L ++  +T++S+     +  
Sbjct: 133  ---TQLNHLISSPWFRFKERLVMLQPVTFTSKIDFNAHRLLRSIDLNTLLSKLPTEEQGD 189

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P     + ++ V+   +    L N  ++   C F     A    R +         E+ +
Sbjct: 190  PADRFYSYADAVARCENHSYLLANAQKLLEHCQFSFYFQAVKNKRDVL----GSDWEDYD 245

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             LR +   G   R                QR++ EL +I +  F+ YFLI  D + +A++
Sbjct: 246  FLRQETFKGALNRYPD-------LTATISQRIEKELELIQQKAFTSYFLINYDIVTFAQQ 298

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
             N     GRGSGA S+ AY L ITD+DP+   L FERF+N  R + PDFDIDF    RDE
Sbjct: 299  RNFY-HVGRGSGANSIVAYCLGITDVDPIELDLYFERFINLYRENPPDFDIDFSWKDRDE 357

Query: 430  VIRYVQNKYG---HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            V  Y+  KY     E V+ +  + + Q  +  R++G+   +P S ++             
Sbjct: 358  VTDYIFRKYNQGKQEHVSLLAAYSTFQYNSVFRELGKVFGLPKSDIE------------- 404

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
             SL   AD   F      D     +++ SQ L  +  H + HA GI+I  +P+       
Sbjct: 405  -SLIHFADKPNF----EPDQFGKLIIKYSQVLHDMPSHLTVHACGILISHKPIHYYTATE 459

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG---VKVDLSLIPF 603
                   P++  +M   E  GL KFD L  + L  ++ +++ + Q     V +       
Sbjct: 460  MPP-KGFPLSHIDMHVAEDIGLHKFDILSQRGLGHIKSAIEIIYQNQGVKVDIRKVEQFK 518

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
             D      L    T+G F +ES  MR  L  M+ D   +++A  S+ RPG   + ++  Y
Sbjct: 519  KDQRIKEHLRDGHTIGAFYVESPAMRMLLAKMKADEYLELVAASSIIRPGVARSGMMREY 578

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM--GK 719
              R   +E+    HP++  ++ ET G+++YQE V+++A   +G SL EADVLRR M    
Sbjct: 579  ILRHVDEERRKIAHPVLADIMPETYGIMVYQEDVIKVAHYFAGLSLGEADVLRRGMSGKS 638

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            + K+E  + K+RF +   + G    IA  ++  +  FA Y F K H+A++AV SYQ+ ++
Sbjct: 639  RSKDEFQRVKDRFFNNCREKGHDDKIAGEVWHQIESFAGYSFAKGHSASFAVESYQSLYL 698

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K ++P+EF+   +          + +  + R     I  P +N      ++    +Y   
Sbjct: 699  KAYFPLEFMVGVIN-NFGGFYHTEFYIHELRMNGADIQAPHINESEYLTRITGITVYLGF 757

Query: 840  AAIKGVGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
              +K +   +   I+ E   +  F  L DFC RV+   ++   L  L+        G ++
Sbjct: 758  IHLKYLEKASVEKILTERRKNGHFIGLADFCGRVE---ISLEQLLILIRINCFRFTGKTK 814

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             +LL     I       ++       ++F    G    +  + +    +      ++  +
Sbjct: 815  QELLWEAHFILN-----KRKAIPGPTDLFKQNTGFNFRQPAVPQLEEIDIRQEIVDQIDI 869

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            L F     P  + K   + +      E  + + G  +++   +V+ +  +T KG+ + + 
Sbjct: 870  LEFPLDS-PFHLIKD--QSICGIKAAELKSYL-GKTVQIVGYLVTVKYTRTVKGNVMNFG 925

Query: 1019 TFSEPAKE-YEANFFP 1033
            TF +      +   FP
Sbjct: 926  TFIDREGHWIDTVHFP 941


>gi|197122653|ref|YP_002134604.1| DNA polymerase III subunit alpha [Anaeromyxobacter sp. K]
 gi|254777925|sp|B4UDQ9|DNAE2_ANASK RecName: Full=Error-prone DNA polymerase
 gi|196172502|gb|ACG73475.1| DNA polymerase III, alpha subunit [Anaeromyxobacter sp. K]
          Length = 1133

 Score =  360 bits (924), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 211/751 (28%), Positives = 348/751 (46%), Gaps = 54/751 (7%)

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR     G   R        G   +D  ++L  EL ++  + ++ YFL V D +++A
Sbjct: 359  MSLLRELVREGARWRYG------GEPPEDVARQLARELELVESLGYASYFLTVWDVVRFA 412

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I    GRGS A S   Y L IT IDP+R  LLFERF++ +R   PD D+DF  +RR
Sbjct: 413  RSRGIL-CQGRGSAANSAVCYVLGITSIDPVRMGLLFERFISAERGEPPDIDVDFEHERR 471

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV  +YG +R   +    + + K+ALRDVG+AL +   QVDRL KLI        
Sbjct: 472  EEVLQYVYQRYGRDRAGMVCEVITYRGKSALRDVGKALGLSLGQVDRLAKLIGTYEDLGQ 531

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                +   +    A      V   L ++++L+G  RH S H  G VI  RPL + VP+  
Sbjct: 532  VGPELLAQAGLDAADS--ERVRMTLALARELQGFPRHLSIHVGGFVITRRPLCETVPIEP 589

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR----------GVKVD 597
                   + Q++   + +  L+K D LGL  LT L ++L  LA+                
Sbjct: 590  AAMPGRTIVQWDKDDLAELDLLKVDLLGLGMLTALSRALALLARHRPAPASPTAVPHPDA 649

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID- 656
            L+ IP +D E Y +L    ++G+FQ+ES         ++P    D++  V++ RPGPI  
Sbjct: 650  LATIPAEDPEVYEMLGRADSIGVFQVESRAQMSLAPRLRPRNFYDLVISVAIIRPGPIQG 709

Query: 657  -NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  Y  R++GKE++   +  ++P+L  T GV ++QEQ M++A + +G++  EAD LRR
Sbjct: 710  GMIHPYLRRRDGKEQVRYPYAPLEPVLARTLGVPLFQEQAMRLAVIAAGFTPGEADELRR 769

Query: 716  AMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
             M  ++  E++   K R ++G ++ GIS   A  IF+ L  FA YGF +SHAA++A++ Y
Sbjct: 770  VMTHRRSHEKLAAMKARLVAGMAERGISGADAEEIFKQLLGFAGYGFPESHAASFALLVY 829

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             +AW+K ++P  F  A +  +           +DA++  +++    V     +  +    
Sbjct: 830  ASAWLKRYHPAAFACALLNSQPMGFYAPHTLVEDAKRHGVEVRGVDVGCSGWESSLEGAA 889

Query: 835  ------------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                        +   L A++G+       I+EA A  PF S+ +   R    +L+R  L
Sbjct: 890  PGRPAAPGETAVLRVGLHAVRGLPRAVGEAILEARAAGPFGSVAELVRRA---RLSRAWL 946

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
              L  AGAL      R   +                      ++FA      +       
Sbjct: 947  VRLAEAGALGALAPDRRDAVW-----------RSLAVEADGGDLFAG----LAPPEPEVA 991

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                +++     +    G    GHP+ + +P L    I+   E         + +A +V+
Sbjct: 992  LPAASAADEVSADFATTGLSVRGHPMALVRPGLGGDRIRTARELGRLPDRAPVEVAGLVI 1051

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +Q+ +T +G  I +V+  +          P
Sbjct: 1052 VRQRPETARG--IVFVSLEDETGIANLVVMP 1080



 Score =  211 bits (538), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 108/299 (36%), Gaps = 37/299 (12%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +  +P +  L+  S +S LEGA     ++ + A     A+A+ D N L+  +    +A  
Sbjct: 1   MSHAPRYAELRCKSCFSFLEGASHPEELVGRAAELGLSALALADVNGLYGIVRAHAEAKR 60

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+  I+G +L +                     +VLL    EGY  L  LV+R +  + 
Sbjct: 61  QGLPLIVGAELVVA-----------GLAPGRPARLVLLAQDREGYAGLCRLVTRAHCGEG 109

Query: 125 GKQSVR--------ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
              +          +    +      GL  L  G+ G                 +   K 
Sbjct: 110 WTGAPERRERDAVAVPFEAVAAGAR-GLFALYPGADGD---------------AVARLKD 153

Query: 177 LFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG R  + + RHR   +  R            +P+  TN+    +       DVL  V 
Sbjct: 154 AFGRRAALAVARHRVAGEEARVLAARSAGRRLGVPVAVTNDVHTHARARQVLQDVLTCVR 213

Query: 236 HSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
           H T V +  R      +  LK   E+  ++SD PE L    +IA +C F ++      P
Sbjct: 214 HGTTVDRAGRRLFPNAERTLKGPEELARLWSDFPEGLAAAADIADQCRFRMEAIRGEHP 272


>gi|46203696|ref|ZP_00051135.2| COG0587: DNA polymerase III, alpha subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 538

 Score =  360 bits (923), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 319/537 (59%), Positives = 420/537 (78%), Gaps = 5/537 (0%)

Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
           ++IPVGPGRGSGAGS+ A++L ITD+DPLRF LLFERFLNP+R+SMPDFDIDFC + R+ 
Sbjct: 2   HDIPVGPGRGSGAGSLVAWSLLITDLDPLRFGLLFERFLNPERVSMPDFDIDFCVEGRER 61

Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS- 488
           VIRYVQ +YG  +V QIITFG+L A+  LRDVGR L+MPY QVD+L KL+P +PA+PV+ 
Sbjct: 62  VIRYVQQRYGERQVGQIITFGTLLARGVLRDVGRVLEMPYGQVDKLTKLVPQNPANPVTL 121

Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            QAI  + + ++A   +P V RL+EIS+KLEGL+RHASTHAAG+VIGDRPL +LVP+YRD
Sbjct: 122 AQAIEGEPKLQQAIQEEPIVARLIEISKKLEGLHRHASTHAAGVVIGDRPLEELVPLYRD 181

Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
            ++ + VTQFNMKW+E+AGL+KFDFLGLKTLT+L+   D L QRG++VDL+ IP DD +T
Sbjct: 182 PKTGMRVTQFNMKWVEQAGLVKFDFLGLKTLTMLRCCTDLLKQRGIEVDLAQIPLDDPKT 241

Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
           Y  +    T+ +FQ+ES+GMR+AL  MQ D +EDIIALV+LYRPGP+ NI VY  RK G+
Sbjct: 242 YEPMGRGETVAVFQVESAGMRKALCEMQADRLEDIIALVALYRPGPMANIPVYCERKLGR 301

Query: 669 EK----IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
           +         HP+++P+L+ET G+I+YQEQVM++A++L+GY+L EAD+LRRAMGKKIK E
Sbjct: 302 DAGNEASWYPHPMLEPILRETFGIIVYQEQVMEVAKVLAGYTLGEADMLRRAMGKKIKAE 361

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           MD Q++RF+ G  ++GI +  A  IF+LLAKFADYGFNKSHAAAYA+++YQTA++K +YP
Sbjct: 362 MDAQRDRFVKGCLESGIPQAKANEIFDLLAKFADYGFNKSHAAAYALVTYQTAYLKANYP 421

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
           VEFLAA+MTL++DN +K+ +F QDA++  I + PPSVNT  V F V + RI Y+LAAIKG
Sbjct: 422 VEFLAAAMTLDIDNTDKLAEFRQDAQRLKITVEPPSVNTSGVVFDVKEGRILYALAAIKG 481

Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           VG      I+ A  DKPF  L  F  R++ + +N+R LE+L+ AGALDC    R + 
Sbjct: 482 VGRAAVESIVAARGDKPFKDLACFARRLNPRHVNKRTLENLIAAGALDCIEPDRARA 538


>gi|220917436|ref|YP_002492740.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans
            2CP-1]
 gi|254777924|sp|B8JAF5|DNAE2_ANAD2 RecName: Full=Error-prone DNA polymerase
 gi|219955290|gb|ACL65674.1| DNA polymerase III, alpha subunit [Anaeromyxobacter dehalogenans
            2CP-1]
          Length = 1142

 Score =  360 bits (923), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 211/751 (28%), Positives = 349/751 (46%), Gaps = 54/751 (7%)

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             + LR     G   R        G   +D  ++L  EL+++  + ++ YFL V D +++A
Sbjct: 368  MSLLRELVREGARWRYG------GEPPEDVARQLARELDLVESLGYASYFLTVWDVVRFA 421

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
            +   I    GRGS A S   Y L IT IDP+R  LLFERF++ +R   PD D+DF  +RR
Sbjct: 422  RSRGIL-CQGRGSAANSAVCYVLGITSIDPVRMGLLFERFISAERGEPPDIDVDFEHERR 480

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            +EV++YV  +YG +R   +    + + K+ALRDVG+AL +   QVDRL KLI        
Sbjct: 481  EEVLQYVYQRYGRDRAGMVCEVITYRGKSALRDVGKALGLSLGQVDRLAKLIGTYEDLGQ 540

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                +   +    A      V   L ++++L+G  RH S H  G VI  RPL + VP+  
Sbjct: 541  VGPELLAQAGLDAADS--ERVRMTLALARELQGFPRHLSIHVGGFVITRRPLCETVPIEP 598

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR----------GVKVD 597
                   + Q++   + +  L+K D LGL  LT L ++L  LA+                
Sbjct: 599  AAMPGRTIVQWDKDDLSELDLLKVDLLGLGMLTALSRALALLARHRPAPASPTAVPHPDA 658

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID- 656
            L+ IP +D E Y +L    ++G+FQ+ES         ++P    D++  V++ RPGPI  
Sbjct: 659  LATIPAEDPEVYEMLGRADSIGVFQVESRAQMSLAPRLRPRNFYDLVISVAIIRPGPIQG 718

Query: 657  -NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              I  Y  R++GKE++   +  ++P+L  T GV ++QEQ M++A + +G++  EAD LRR
Sbjct: 719  GMIHPYLRRRDGKEQVRYPYAPLEPVLARTLGVPLFQEQAMRLAVIAAGFTPGEADELRR 778

Query: 716  AMG-KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
             M  ++  E++   K R ++G ++ GIS   A  IF+ L  FA YGF +SHAA++A++ Y
Sbjct: 779  VMTHRRSHEKLAAMKARLVAGMAERGISGADAEEIFKQLLGFAGYGFPESHAASFALLVY 838

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             +AW+K ++P  F  A +  +           +DA++  +++    V     +  +    
Sbjct: 839  ASAWLKRYHPAAFACALLNSQPMGFYAPHTLVEDAKRHGVEVRGVDVGCSGWESSLEGAA 898

Query: 835  ------------IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                        +   L A++G+       I+EA A  PF S+ +   R    +L+R  L
Sbjct: 899  PGRPAAPGETAVLRVGLHAVRGLPRAVGEAILEARAAGPFGSVAELVRRA---RLSRAWL 955

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
              L  AGAL      R   +                      ++FA      +       
Sbjct: 956  VRLAEAGALGALAPDRRDAVW-----------RSLAVEADGGDLFAG----LAPPEPEVA 1000

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                +++     +    G    GHP+ + +P L    I+   E         + +A +V+
Sbjct: 1001 LPAASAADEVSADFATTGLSVRGHPMALVRPGLGGDRIRTARELGRLPDRAPVEVAGLVI 1060

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +Q+ +T +G  I +V+  +          P
Sbjct: 1061 VRQRPETARG--IVFVSLEDETGIANLVVMP 1089



 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 66/299 (22%), Positives = 108/299 (36%), Gaps = 37/299 (12%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +  +P +  L+  S +S LEGA     ++ + A     A+A+ D N L+  +    +A  
Sbjct: 1   MSHAPRYAELRCKSCFSFLEGASHPEELVGRAAELGLSALALADVNGLYGIVRAHAEAKR 60

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+  I+G +L +                     +VLL    EGY  L  LV+R +  + 
Sbjct: 61  QGLPLIVGAELVVA-----------GLAPGRPARLVLLAQDREGYAGLCRLVTRAHCGEG 109

Query: 125 GKQSVR--------ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
              +          +    +      GL  L  G+ G                 +   K 
Sbjct: 110 WTGAPERRERDAVAVPFEAVAAGAR-GLFALYPGADGD---------------AVARLKD 153

Query: 177 LFGDRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            FG R  + + RHR   +  R            +P+  TN+    +       DVL  V 
Sbjct: 154 AFGRRAALAVTRHRVAGEEARVLAARSAGRRLGVPVAVTNDVHTHARARQVLQDVLTCVR 213

Query: 236 HSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
           H T V +  R      +  LK   E+  ++SD PE L    +IA +C F ++      P
Sbjct: 214 HGTTVDRAGRRLFPNAERTLKGPEELARLWSDFPEGLAAAADIADQCRFRMEEIRGEHP 272


>gi|120437403|ref|YP_863089.1| DNA polymerase III subunit alpha-2 [Gramella forsetii KT0803]
 gi|117579553|emb|CAL68022.1| DNA polymerase III subunit alpha-2 [Gramella forsetii KT0803]
          Length = 994

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 242/1034 (23%), Positives = 435/1034 (42%), Gaps = 112/1034 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H+ YSL  G +    + +    +    +A+TD NN  + LEF +      ++ ++G 
Sbjct: 3    LNCHTYYSLRYGTMPTVELCELAKKNGVKQLAVTDINNTSACLEFLKITRRTNLKALVGI 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE-LVSRMYLLDQGKQS-VRI 131
                            +         V +     GY++L E L + ++   +       +
Sbjct: 63   DF--------------RNGADQQY--VGIAKNNTGYRQLNEHLSNYIHTHKEFPAQAPPL 106

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                      +  I+ +                   EK +   KK F +  ++ +     
Sbjct: 107  P---------DCFIIYS------------------LEKVISQKKKDFRENEFIGI----S 135

Query: 192  YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTP 250
             +  R+ +  +     +  LV      F +++DY AH +L A+ ++T++S+     +   
Sbjct: 136  TESLRKLKFSEY-QKLKDKLVLLQTVSFRNKKDYNAHRLLRAIDNNTLLSKLPKSEQGFF 194

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             H +   +++   F D P  LENT  +   C    +           K     ++E+E +
Sbjct: 195  HHQMIPPADIEKEFEDFPHILENTQNLMNLCQVNFEFGRDQNR--NLKIAGRSEQEDEKK 252

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L       L  R  +         +    R++ EL VI R+ F  YFLI  D + +A+  
Sbjct: 253  LVELCYKKLPERYPE-------KEEKVYARVEKELGVIIRLGFVSYFLINLDIVSYARSQ 305

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            N P   GRGSGA S+ AY L IT++DP+   L FERF+NP+R S PDFDIDF    R++V
Sbjct: 306  NYPF-IGRGSGANSIVAYILGITNVDPIELDLYFERFINPNRSSPPDFDIDFSWKDRNDV 364

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
             RY+  +Y  E  A + T+ + + +A  R++G+   +P   +D+L +   N         
Sbjct: 365  TRYIFEQY--EHTALMGTYVTFKRRAVARELGKVFGLPKENIDKLSQGFFN--------- 413

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                                +L  S+ ++G   + S H+ GI+I +  +      +    
Sbjct: 414  ----YKELDHLEKL------VLRYSRLIDGFPNYLSVHSGGIMILNDSVYNYAGTFLPP- 462

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP-----FDD 605
                  Q +M   E  G+ KFD L  + L+ +  +++ + Q      +  I       +D
Sbjct: 463  KGFRTIQIDMNIAEDVGIHKFDILAQRGLSKITDAIEIINQNQPTAKIKDIEDIKVFKED 522

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
                 LL T   +G+F +ES  MR  L  +Q D   +++A  S+ RPG     +   +  
Sbjct: 523  SAINDLLKTGDCMGVFYVESPAMRGLLTKLQTDNYMNLVAASSVIRPGISSAGMKEEFIR 582

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM--GKKI 721
            R    E+    HP++  ++K+T GV++YQE VM++A   +G  L +ADVLRR M   K  
Sbjct: 583  RHRDPERRKEAHPVMLKIMKDTYGVMVYQEDVMKVAFEFAGLDLDDADVLRRGMSGKKTS 642

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            K +M+K +E F     + G S  +   ++E ++ FA Y F K H+A+YAV SYQ+ ++K 
Sbjct: 643  KGQMEKIEETFRENCKERGYSVQLTNEVWEQISSFAGYAFPKGHSASYAVESYQSLYLKK 702

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            ++P+EF+ A++         ++ + Q+ R+   +I  P +N       + +  +Y  L  
Sbjct: 703  YFPLEFMVAAIN-NGGGFYDLQTYIQEIRKCGGEIHAPCINESDHPNTIHNKDVYLGLGY 761

Query: 842  IKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            +K +   T   I+E      PF SL+DF  RV+   ++   +  L+   A     + +  
Sbjct: 762  VKELEDKTIIQILENRQFFGPFKSLDDFIDRVN---ISIEQISLLLKVNAFRFTKFDKHH 818

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            LL      + Y +       +    +F     +      L +F        ++    +LG
Sbjct: 819  LLW-----KAYFKLQHNKPKSNQPLLF----KSKHRDFELPEFEYSKLIEAYDQ-MELLG 868

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            F       D+ +  L+       +     I G  + +   +V+ ++  T  G  + + TF
Sbjct: 869  FPLCSQ-FDLLQEPLK--NSVEAKNLKNYI-GKEVEIYGNLVNSKKTGTSNGKYMYFGTF 924

Query: 1021 SEPAKEY-EANFFP 1033
             +      +   FP
Sbjct: 925  YDIEGNIFDIVLFP 938


>gi|325001990|ref|ZP_08123102.1| error-prone DNA polymerase [Pseudonocardia sp. P1]
          Length = 886

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 230/807 (28%), Positives = 358/807 (44%), Gaps = 55/807 (6%)

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
               P     H    R          P A+     + R  +F L + AP LP F   E + 
Sbjct: 63   PWLPAAGTAHLRSGREMTRRFEDRHPGAVARAAGLGRELAFELHLVAPDLPPFDVPEGE- 121

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                E + LR     G   R               R     EL +I    F GYFLIV D
Sbjct: 122  ---TEASWLRALTERGRLQRYGSHDENPFAAYTVER-----ELAIIEEKNFPGYFLIVHD 173

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
             + + ++ +I    GRGS A S   YAL IT++D +R  LLFERFL+PDR   PD D+D 
Sbjct: 174  IVDFCRREDI-FCQGRGSAANSAVCYALGITNVDAVRHGLLFERFLSPDRDGYPDIDLDI 232

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
               RR+E I+YV  +YG    AQ+    + + ++A+RD  RAL     Q D   K +   
Sbjct: 233  ESGRREEAIQYVYRRYGRLFAAQVANVITYRPRSAVRDTARALGFSPGQQDAWSKRVERW 292

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
             A   S      +   +           LL+++ +L G  RH   H+ G+VI DRP+S++
Sbjct: 293  HALEASELGTGGEQTLQ-------MPPLLLDLAGQLMGAPRHLGIHSGGMVICDRPVSEV 345

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLI 601
            VP+      D  V Q++ +    AGL+KFD LGL  LT L    D + +    +++L  I
Sbjct: 346  VPVEWARMEDRTVVQWDKEDCAAAGLVKFDLLGLGMLTALHLMADLVERNDGTRIELHRI 405

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIV 659
               D E Y +L+   ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++ 
Sbjct: 406  GESDPEVYAMLSRADSVGVFQVESRAQMATLPRLRPREFYDLVVEVALIRPGPIQGGSVH 465

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-G 718
             Y  R+N  +     HPL+ P L +T G+ ++QEQ+MQIA  ++G+S +EAD LRRAM  
Sbjct: 466  PYIRRRNRIDDWEHDHPLLKPALDKTLGIPLFQEQMMQIAVDVAGFSAAEADELRRAMGA 525

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K+  E+M++ + RF  G + NGI+  +A  IF  +  FA++GF +SH+ ++A + Y +AW
Sbjct: 526  KRSTEKMERLRGRFFDGMAANGITGELAETIFTKMLAFANFGFPESHSISFAALVYYSAW 585

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-------FKVG 831
             K ++P  F AA +  +       +    DAR+  +++  P VN    D          G
Sbjct: 586  FKLYHPAAFCAALLNAQPMGFYSPQSLVADARRHGVRVRRPDVNEGRADAILQPDPDSTG 645

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
               +   L+ I+ +GT  A  +    A   PF  L D   RV          E+L  AGA
Sbjct: 646  GWAVRLGLSGIRTIGTDLAGAVDAVRASAGPFADLPDLARRVRLTG---PQAEALATAGA 702

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
              CFG  R + L +   +             + E++     G                + 
Sbjct: 703  FGCFGVERREALWAAGVV----------AGVRPEHLPGTAVG-----FDAPALPGMTDAE 747

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN------NIRLAAMVVSK 1004
               ++    G     HP+   +  L  +G    +      R         + +  +V  +
Sbjct: 748  LTVSDVWATGVSPDSHPVQHLRGKLDGLGAVRIDRLDDVGRRAGPDAPPRVLVGGLVTHR 807

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            Q+  T +G  + +V   + +       
Sbjct: 808  QRPATARG--VTFVNLEDESGMLNVTC 832


>gi|298231030|ref|ZP_06964711.1| DNA polymerase III DnaE [Streptococcus pneumoniae str. Canada
            MDR_19F]
          Length = 863

 Score =  359 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 245/733 (33%), Positives = 390/733 (53%), Gaps = 41/733 (5%)

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
             +  +    ELR +A  G         + KG  +++Y+ RLD EL+VI  M F  YFL+V
Sbjct: 62   FNPARPAVEELRERAELG--------LVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVV 113

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D +++ + N   +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DI
Sbjct: 114  WDLLRFGRSNGYYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDI 173

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            D     R + IRYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I 
Sbjct: 174  DIPDIYRPDFIRYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKIS 233

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                      A   + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+
Sbjct: 234  FRDN---LKSAYEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLT 290

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLS 599
              +P+      ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+  G+ + + 
Sbjct: 291  NYIPLKYG--DEIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAEIEGIHLKIE 348

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             I  +D ET  L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I 
Sbjct: 349  EIDLEDKETLDLFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYIN 408

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
             +  RK+G+E++  + P+++ +L  T G+++YQEQVMQ+AQ  +G+SL +AD+LRRAMGK
Sbjct: 409  NFVARKHGQEEVTVLDPVLEDILAPTYGIMLYQEQVMQVAQRFAGFSLGKADILRRAMGK 468

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            K    M + +  FI G+ + G +   A  +F+++ KFA YGFN+SHA AY+ +++Q A+ 
Sbjct: 469  KDASAMHEMRVSFIQGSLEAGHTVEKAEQVFDVMEKFAGYGFNRSHAYAYSALAFQLAYF 528

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            KTHYP  F    +            +  DA +   ++   S+NT     K+ +  IY  L
Sbjct: 529  KTHYPAIFYQVMLNSSNS------DYLIDALEAGFEVASLSINTIPYHDKIANKAIYLGL 582

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             +IKGV    A  I+E   ++P+ ++EDF +++    L   +LE LV  G  D F  +R 
Sbjct: 583  KSIKGVSNDLALWIIE---NRPYSNIEDFIAKLPENYLKLPLLEPLVKVGLFDSFEKNRQ 639

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            ++  +L N+ ++ + +         ++F     ++ +              +F  EQ +L
Sbjct: 640  KVFNNLANLFEFVKEL--------GSLFGDAIYSWQES------EDWTEQEKFYMEQELL 685

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G   S HPL      +    I            +   +   V   +  +T+KG  + ++ 
Sbjct: 686  GIGVSKHPLQA----IASKAIYPITPIGNLSENSYAIILVEVQKIKVIRTKKGENMAFLQ 741

Query: 1020 FSEPAKEYEANFF 1032
              +  K+ +   F
Sbjct: 742  ADDSKKKLDVTLF 754


>gi|254387354|ref|ZP_05002606.1| DNA polymerase III alpha subunit [Streptomyces sp. Mg1]
 gi|194346151|gb|EDX27117.1| DNA polymerase III alpha subunit [Streptomyces sp. Mg1]
          Length = 936

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 221/836 (26%), Positives = 357/836 (42%), Gaps = 38/836 (4%)

Query: 215  NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENT 274
                +         D+L A      V  +              +   +       A    
Sbjct: 5    QPVRYADPGQGPVADILDAARRLVPVDPRKPLDSGERWLKDPAAMAAAADRIAQAAGLRP 64

Query: 275  VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL-----RNKAVAGLEVRLAQGAIA 329
             +  R  +   +          +          E  L     R           A   + 
Sbjct: 65   ADARRLLAETRRSAEACAVDPEDDLGIGSVHFPEAHLVGAGHRTAQRVLASRACAGMVLR 124

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                 + Y +R+  EL+VIA   F+ YFL VA  +   +   I V   RGSGAGS+  + 
Sbjct: 125  GYAGERAYWERMHQELDVIAYHGFASYFLTVAQVVDDVRTMGIRVA-ARGSGAGSLVNHL 183

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L I   DP+   LL ERFL+  R  +PD DID    RR EV R + +++G ERVA +   
Sbjct: 184  LGIAHADPVAQGLLMERFLSKRRHVLPDIDIDVESARRLEVYRRIIDRFGTERVATVAMP 243

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
             + + + A+RDVG AL M  ++ DRL K  P+  A        A+    R+ R  +    
Sbjct: 244  ETYRVRHAIRDVGAALSMDPAETDRLAKAFPHIRARDARAAL-AELPELRDVRGRE--RG 300

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            RL E+ + L+ L R  + H  G+++ D  L    P+        P++QF+   +E  GL+
Sbjct: 301  RLWELVEALDALPRGIAMHPCGVLLSDASLLARTPVVPTSGEGFPMSQFDKDDVEDLGLL 360

Query: 570  KFDFLGLKTLTLLQKSLDFLAQ----RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            K D LG++  + +  ++  L +         D + +P  D  TY L+ +  TLG FQ+ES
Sbjct: 361  KLDVLGVRMQSAMAHAVAELRRATGEELDLDDPAQVPPGDGSTYELIRSAETLGCFQIES 420

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLK 683
             G R  +  +QP    D++  +SL+RPGP+   +   +   ++G+  +   H  +   L+
Sbjct: 421  PGQRDLVGRLQPSTFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRFPHEDLADALR 480

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            ET GV+++ EQ+++I  +++G    EAD +RR +     E   + K  F + A+  G S 
Sbjct: 481  ETYGVVVFHEQIIEIVHVMTGCGRDEADRVRRGLSD--PESQGRIKVWFAATAAGRGYSP 538

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             +    +E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +
Sbjct: 539  EVIGRTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-R 597

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGD-------NRIYYSLAAIKGVGTTTARHIMEA 856
                DAR+  + ++P  VN   V  ++           +  +LA + G+    A  I   
Sbjct: 598  LLLADARRRGVPVLPLDVNRSAVAHRIELVSDVPPLWGLRLALADVHGISEAEAGRI--- 654

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
             + +P+ SL DF  R       R V E L   GALD FG +R  LL  L  +   AQ   
Sbjct: 655  ESGQPYASLRDFWDRAHP---GRPVAERLAQVGALDAFGANRRDLLLHLTELH-GAQRAA 710

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
              R +    +     G  +  + L        + R   E  VLG   S H +  +   L 
Sbjct: 711  GARGSGQLPLGG---GKSTAAVGLPDL---TDTERLSAELGVLGMDASRHLMGDHHAFLA 764

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++G+        T  G  + +A    + Q    R G R+ + T  +     +  FF
Sbjct: 765  ELGVVPARRLRETEHGQTVLVAGAKAATQTPPIRSGRRVIFTTLDDGTGLVDLAFF 820


>gi|120609220|ref|YP_968898.1| DNA-directed DNA polymerase [Acidovorax citrulli AAC00-1]
 gi|120587684|gb|ABM31124.1| DNA polymerase III, alpha subunit [Acidovorax citrulli AAC00-1]
          Length = 668

 Score =  358 bits (919), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 174/684 (25%), Positives = 304/684 (44%), Gaps = 39/684 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +V L+  S+++ L GA     ++ +        +A+ D  ++   +     A AAG++
Sbjct: 9   PDYVELRCVSNFTFLRGASDPEELVRRAQELGYSGLALADECSMAGVVRAHVAAKAAGLR 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            I+G Q  +            +T      ++V+L     GY  L E ++++      K  
Sbjct: 69  LILGAQFCVQP----------RTAEEARFTVVVLARNLNGYGNLCEFITKLRRSSA-KGE 117

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-Q 187
             +    +        + L              ++    E       + F  R ++ + Q
Sbjct: 118 YHLTQGQITGAELADCLALL-CPD-------RPSTDAQLEAAGTWALQQFRGRCWIGVDQ 169

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             +  D     ++  LA    LPLVA  +            DVL A      +  +    
Sbjct: 170 VRQLDDEAWLHRMRTLAELTALPLVAVGDVHMHVRSRKPLQDVLTATRIGKPL-TECGHA 228

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
           +        R+ +    +   + L  T+ +A RCSF +       P  +           
Sbjct: 229 LHRSAERHLRTRLRLAQTFPADLLAETLNVAARCSFSIDELKYQYPDEVVPRG----HTA 284

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + LR     G   R  +G       +   + +++ EL +I  +++  YFL V D + +A
Sbjct: 285 ASFLRQVTYEGAGRRWPEG------ISPTVQAQIEHELELICELRYEHYFLTVYDIVAFA 338

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           +  +I    GRGS A SV  Y L +T++DP R S+LFERF++ +R   PD D+DF   RR
Sbjct: 339 RSRHIL-CQGRGSAANSVVCYCLGVTEVDPARMSVLFERFISRERNEPPDIDVDFEHQRR 397

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
           +EVI+Y+  KYG +R A   T  S + K+A+RDVG+AL      +D L +         +
Sbjct: 398 EEVIQYLYTKYGRDRAALTATVISYRPKSAIRDVGKALGFDLQTLDALAEGQKWFDGEDI 457

Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
            L+   +        ++D +V +L+ ++ +L G  RH S H  G V+    LS++VP+  
Sbjct: 458 RLERFEE----LGMSVSDLAVRQLITLTTQLIGFPRHLSQHTGGFVLTRDRLSRMVPIEN 513

Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDH 606
              +D  V +++   ++ AGL+K D L L  L+ ++++LD +  +RG    +  IP +D 
Sbjct: 514 ASMADRTVIEWDKDDLDAAGLLKVDVLALGMLSAIRRALDMIGLRRGYAFGMQDIPAEDS 573

Query: 607 ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NR 664
           +TY ++    T+G+FQ+ES      L  ++P C  D++  V++ RPGPI   +V+   NR
Sbjct: 574 DTYDMICRADTIGVFQIESRAQMSMLPRLRPRCFYDLVIEVAIVRPGPIQGGMVHPYLNR 633

Query: 665 KNGKEKIVSIHPLIDPMLKETQGV 688
           + GKE +      +   L  T GV
Sbjct: 634 RQGKEPVTYPSEALKTALGRTLGV 657


>gi|318061695|ref|ZP_07980416.1| DNA polymerase III subunit alpha [Streptomyces sp. SA3_actG]
 gi|318079204|ref|ZP_07986536.1| DNA polymerase III subunit alpha [Streptomyces sp. SA3_actF]
          Length = 761

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 179/659 (27%), Positives = 297/659 (45%), Gaps = 31/659 (4%)

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
             + + I   DPL   LL ERFL+  R  +PD DID    RR EV R +  ++G ERVA +
Sbjct: 1    NHLIGIAHADPLEHGLLMERFLSKRRSVLPDIDIDVESARRIEVYRAILGRFGPERVATV 60

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
                + + + A+RDVG AL +  + +DR+    P+  A      A+ +            
Sbjct: 61   AMPETYRVRHAIRDVGAALSLDPADIDRIATAFPHIRARDA-RTAMDELPELASVAAERE 119

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
                  E+ + L+ L R  + H  G+++ D  L    P+       LP+ QF+ + +E  
Sbjct: 120  KYGTFWELVEGLDALPRGVAMHPCGVLLSDASLLSRTPVVPTSGESLPMAQFDKEDVEDL 179

Query: 567  GLIKFDFLGLKTLTLLQKSL-DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
            GL+K D LG++  + +  +L +     G   D+  IP  D  TY L+ +  TLG FQ+ES
Sbjct: 180  GLLKLDVLGVRMQSAMAHALSELDRATGEAPDIDAIPPGDERTYQLIRSTETLGCFQIES 239

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLK 683
             G R  +  +QP    D++  +SL+RPGP+   +   +   ++G+  +   HP + P L+
Sbjct: 240  PGQRDLVGRLQPSTFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRYPHPDLAPALE 299

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
            +T GV+++ EQV+ +   ++G    EAD +RR +     E   + +  F   A++ G   
Sbjct: 300  DTYGVVVFHEQVIDLVHTMTGCGRDEADRVRRGLSD--PESQGRIRFWFAQRAAERGYDA 357

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                  +E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +
Sbjct: 358  ETVTRTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-R 416

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG----------DNRIYYSLAAIKGVGTTTARHI 853
                DAR+  + I+P  VN      ++              +   L+ + G+       I
Sbjct: 417  LLLADARRRGVPILPVDVNHSAPAHRIELVSENGPPAARWGVRLGLSDVHGMSEAEGERI 476

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
              A   +P+ SL DF  R      +R V E L   GALD FG +R  LL  L  + +  +
Sbjct: 477  AAA---QPYTSLLDFWQRARP---SRPVAERLAQVGALDAFGANRRDLLLHLAELHRMGR 530

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
                + T     +    +   +           + + R   E  VLG   S H +  ++ 
Sbjct: 531  GAASHGT--QLPLSGGRRTAPAG------LPDLDETERLSAELGVLGMDASRHLMGDHQE 582

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             LR++G+           G  + +A    + Q    R G R+ + T  +     +  FF
Sbjct: 583  FLRELGVVSARRLREAPHGATVLVAGAKAATQTPPIRSGKRVVFTTLDDGTGLVDLAFF 641


>gi|226327032|ref|ZP_03802550.1| hypothetical protein PROPEN_00893 [Proteus penneri ATCC 35198]
 gi|225204250|gb|EEG86604.1| hypothetical protein PROPEN_00893 [Proteus penneri ATCC 35198]
          Length = 588

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 180/454 (39%), Positives = 266/454 (58%), Gaps = 11/454 (2%)

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
             +    VD+S I   D  ++ +L    T  +FQLES GM+  ++ ++PDC ED+IALV+L
Sbjct: 6    KKSLEPVDISAISLTDQRSFDMLQRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVAL 65

Query: 650  YRPGPIDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            +RPGP+ + +V  + +RK+G E+I        H  + P+L+ T GVI+YQEQVMQIAQ+L
Sbjct: 66   FRPGPLQSGMVDNFIDRKHGVEEISYPDVKWQHESLQPVLEPTYGVILYQEQVMQIAQVL 125

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
            +GY+L  AD+LRRAMGKK  EEM KQ+  F  GA KNG+   +A+ IF+L+ KFA YGFN
Sbjct: 126  AGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGAIKNGVDGELAMKIFDLVEKFAGYGFN 185

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
            KSH+AAYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++++PP +N
Sbjct: 186  KSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDIN 245

Query: 823  TPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRR 880
            +    F V D   I Y + AIKGVG      I+EA      F  + D C+R ++KKLNRR
Sbjct: 246  SGLYHFHVNDEGEIVYGIGAIKGVGEGPIEAIVEARQQGGHFKDIFDLCARTETKKLNRR 305

Query: 881  VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKIT 939
            V+E L+ +GA D  G  R  L+ SL++  K A    K       ++F    +     + +
Sbjct: 306  VMEKLIMSGAFDKLGPHRAALMSSLEDALKAADQHAKAEAIGQSDMFGVLAEAPEQVERS 365

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI-KGYEESVATIRGNNIRLA 998
                      V  E E+  LG Y +GHP+  Y   + +       ++ V T RG  +++A
Sbjct: 366  YANIPKWPDQVVLEGERETLGLYLTGHPITRYLKEIERYAAGTRLKDLVPTPRGQMVKVA 425

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +V++ +   T++G+RIG  T  + +   E   F
Sbjct: 426  GLVLASKVFTTKRGNRIGVCTLDDRSGRLEIMLF 459


>gi|300776582|ref|ZP_07086440.1| DNA polymerase III, alpha subunit [Chryseobacterium gleum ATCC 35910]
 gi|300502092|gb|EFK33232.1| DNA polymerase III, alpha subunit [Chryseobacterium gleum ATCC 35910]
          Length = 1024

 Score =  357 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 236/1036 (22%), Positives = 433/1036 (41%), Gaps = 115/1036 (11%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H+ +SL  G +S+  ++D     +   +A+TD N +    +F +     GI+PI+G 
Sbjct: 3    LNCHTYHSLRYGTISVEELVDLAMDYKLKVLALTDINTVTGIYQFYKLCEDKGIKPIVGV 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             + ++ +                   + L    +G   +  L++     +     + I  
Sbjct: 63   DVRVENEQYY----------------ICLAKNPKGIAEVNRLLTDYNCEN-----IEIPK 101

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
            S       E   ++              N   +  +             ++ + R    +
Sbjct: 102  S---NPQLENCFVI----------YTLQNKPDILLE-----------HEFIGI-RQDELN 136

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                S+   L +     +V  +   F ++++YE H +L A+  + + ++           
Sbjct: 137  LLINSEFKSLTHK----MVILHPVTFKTDDEYELHKILRAIDGNILFTKLAEKDYCRKDE 192

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            L    + +             VE  +                 +K   D ++ +   L  
Sbjct: 193  LFMSKKTLLDQFKH---YPEIVENTKFIVSQCSFDFEFKTPKNKKYYTDSKENDFKLLSQ 249

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
             A  GL  R            +   +R + EL VI ++ F GYFLI  D IQ++K+    
Sbjct: 250  LAYEGLSHRYPDNN-------RQAIERAEKELTVIHQLNFCGYFLITWDIIQYSKRMGFM 302

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
               GRGSGA S+ AY L I+DI PL   L FERFLN +R S PDFDID+    RD ++ Y
Sbjct: 303  -HVGRGSGANSIIAYCLGISDICPLELDLYFERFLNLNRKSPPDFDIDWSWKNRDTILEY 361

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            + +KYG   VA   T    + K+  R++G+   +P  ++D+L                  
Sbjct: 362  IFDKYGKNHVAFCGTNVEFKRKSRFRELGKVFGLPKDELDQLS----------------- 404

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
               + RE    +  V  + +  Q L G     S H+ GI+I + P++    +      + 
Sbjct: 405  --KKPRELHDQNSIVQEIYKYEQLLVGFPNQRSMHSCGILISEEPITNYSVLEFPP-KEF 461

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVDLSLIPFDDHETYH 610
            P+ QF+M   E  GL KFD L  + L  ++ +++ + ++    V ++ + I  D+ +   
Sbjct: 462  PIVQFDMHTAEDIGLEKFDILSQRGLGTIKDTVNLIKEKKGINVDIEDTRISKDEVKCNE 521

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGK 668
             L+   T+G F +ES  MR  L  ++ D  + ++A  S+ RPG   + ++  Y  R N  
Sbjct: 522  FLSIGKTIGCFYIESPAMRGLLRRLKCDNYKVLVAASSIIRPGVAQSGMMREYIFRHNHP 581

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             +    H + +  L ET G+++YQE V++IA    G S +  DVLRRAM  K +     Q
Sbjct: 582  GQFEYFHDVFEKELGETYGIMVYQEDVIKIAMHFGGVSAANGDVLRRAMSGKGRSLSALQ 641

Query: 729  KER--FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +  F     + G  + ++  ++  +  FA Y F K+H+A+YAV SYQ+ ++K +YP+E
Sbjct: 642  KLKDDFFESCKRKGHPEQLSQEVYRQIESFAGYSFCKAHSASYAVESYQSLFLKAYYPIE 701

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+ +++        + + +  +A+    +I  P +N       +    +Y  L  I+ + 
Sbjct: 702  FMVSAIN-NGGGFYRTEVYVHEAKMSGAKIHNPCINLSEFHTTLYGTDVYLGLMHIEKL- 759

Query: 847  TTTAR-HIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
              + + +I E    +  + SLEDF  RV+   +    L+ L+F GA    G  + +LL  
Sbjct: 760  EASIKVNIPEERKENGDYGSLEDFIKRVN---IGIETLQILIFVGAFRFTGKQKHELLIE 816

Query: 905  LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
               +    Q+  K       ++F   +  +     L      N      +E  +LGF  S
Sbjct: 817  ARFLLSKNQYKSK-----IISLFEEPQKDY----KLPTI-DRNPFEDAFDEIEILGFPVS 866

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR------KGSRIGWV 1018
                D+ K   +  G    ++ +       +++ A ++S++    +      K   + + 
Sbjct: 867  YSIFDLLKT--KYRGHVLVKDLLKY-HKKQVKMLAYLISRKHVPIKMRNHPGKKDDMYFG 923

Query: 1019 TFSEPAKE-YEANFFP 1033
            T+ +   E ++   FP
Sbjct: 924  TWIDAEGEYFDTAHFP 939


>gi|308447379|ref|XP_003087417.1| hypothetical protein CRE_07974 [Caenorhabditis remanei]
 gi|308256652|gb|EFP00605.1| hypothetical protein CRE_07974 [Caenorhabditis remanei]
          Length = 699

 Score =  357 bits (917), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 284/709 (40%), Positives = 407/709 (57%), Gaps = 31/709 (4%)

Query: 99  IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
           + +L  T EG   L  L S   +        R+    LQ  G +GLI  TG  SG I   
Sbjct: 1   MTMLSETTEGMHNLFRLSSYASMQG-YYFKPRMDRELLQTYG-KGLITTTGCPSGEIQTR 58

Query: 159 FFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNN 216
                   A +    F+ +FG +  +  L  H    +R  +S ++++A   ++PLVATN+
Sbjct: 59  LRLGQYDEARQAAAEFQDIFGRENFFCELMDHGLDIERRVQSDLIKIARDLKIPLVATND 118

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTV 275
             ++ E D EAH  L+ V   + +   +R +     +YLK  +EM  IF D P+A +NT+
Sbjct: 119 LHYVHEADAEAHSALLCVQSGSRLDDPNRFKFDGSGYYLKTAAEMRHIFRDFPDACDNTL 178

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
            IA RC+      A  +PR+   + +     E++    +   GL  R   G         
Sbjct: 179 LIAERCNVEFNTSANYMPRYPVPDGE----TEDSWFIKEVEKGLHYRYPSG------IPD 228

Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
             R++ ++E+ VI +M F GYFL+VADFI W+K N I VGPGRGSGAGS+ AYA+ ITD+
Sbjct: 229 SVRKQAEYEIGVITQMGFPGYFLVVADFINWSKDNGIRVGPGRGSGAGSMVAYAMRITDL 288

Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
           DPL+  L+FERFLNPDR+SMPDFD+DF   RR EVI YV  KYG ERVAQI+T+G++++K
Sbjct: 289 DPLQHGLIFERFLNPDRVSMPDFDVDFDDRRRGEVIMYVTEKYGDERVAQIVTYGTIKSK 348

Query: 456 AALRDVGRALQMPYSQVDRLCKLIPN-DPAHPVS--------LQAIADDSRFREARLADP 506
            AL+D  R L  P+   ++L K +P    A  +              + + FR     DP
Sbjct: 349 QALKDASRVLCFPFGMGEKLTKAMPPAVMAKDIPLSGITDPEHPRYKEAAEFRAVLTEDP 408

Query: 507 SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
               + + +  LEGL R    HAAG+++   PL  ++P+ +  +    VTQF+    E  
Sbjct: 409 EAKLVYDTALGLEGLKRQWGVHAAGVIMSSDPLIDIIPLQKREQDGQIVTQFDYPTCEGL 468

Query: 567 GLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
           GLIK DFLGL+ LT++  +L+ +   RG ++DL  +  DD  +Y LL    TLG+FQL+ 
Sbjct: 469 GLIKMDFLGLRNLTIISDALENIRLNRGEELDLERLELDDAPSYELLARGDTLGVFQLDG 528

Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPI--DNIVVYNNRKNGKEKIVSIHPLIDPM-- 681
             MR  L  M+PD  EDI A+++LYRPGP+  D+   Y  RKNG + I  IHP ++    
Sbjct: 529 GPMRGLLRLMKPDNFEDISAVLALYRPGPMGADSHTNYALRKNGLQPITPIHPELEEPLK 588

Query: 682 --LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
             L+ T G+IIYQEQVM IAQ ++G+SL +AD+LRRAMGKK K E+DKQ E F  G  + 
Sbjct: 589 DILETTYGLIIYQEQVMSIAQRVAGFSLGQADILRRAMGKKKKSELDKQYEGFSGGMKER 648

Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
           G S+     ++++L  F+DY FNK+H+AAY V+SY TA++K HYP E++
Sbjct: 649 GFSEAAIKALWDILLPFSDYAFNKAHSAAYGVVSYWTAYLKEHYPAEYM 697


>gi|227537930|ref|ZP_03967979.1| DNA polymerase III alpha subunit [Sphingobacterium spiritivorum ATCC
            33300]
 gi|227242232|gb|EEI92247.1| DNA polymerase III alpha subunit [Sphingobacterium spiritivorum ATCC
            33300]
          Length = 972

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 230/1033 (22%), Positives = 431/1033 (41%), Gaps = 117/1033 (11%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L   + +S   G  S   +++   A     +A+T+ NN   + +F  K    GI+PI+G 
Sbjct: 3    LNCKTWFSYHYGTFSSKQLVEDAKALDIHTLALTNINNTADSWDFVLKCREQGIKPILGT 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY-LLDQGKQSVRIC 132
            ++                    V   +LL     G+ ++ E +S      +       + 
Sbjct: 63   EI----------------RNDHVFCYILLARNETGFFQINEFLSAYNQRKENFPAEPELS 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
               L  I   G   ++    G                RL   ++L  DR           
Sbjct: 107  TEHLWIIYRYGQKSVSALREGE-----LIGLRPQDLNRLELQQELAADRF---------- 151

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
                               V  +   F     +  H +L A+A +T++S+     +    
Sbjct: 152  -------------------VMLSPVTFQDRTYFNLHRLLRAIARNTLLSKLLPEDIAGSD 192

Query: 253  YLKNRSEM-VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +       V  F+  P  +  T+++A  C   +++      ++     +D +      L
Sbjct: 193  EMLLSEVELVRQFARFPTVISRTIQVADSCHISMELKTDKNRKYFTTTEEDDRH----LL 248

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R  A+ G         +  G   ++  +R++ EL +I +  F+ YFLI+ D +++A +  
Sbjct: 249  RKLAMEGC-------VMRYGTEHKEAFERVEKELKMIGKQGFNAYFLIIWDILRYAHERG 301

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
                 GRGSGA S+ AY L ITD+DP++  L FERFLNPDR S PDFDIDF    RD + 
Sbjct: 302  FY-HVGRGSGANSIVAYCLRITDVDPIKLDLYFERFLNPDRSSPPDFDIDFSWKDRDAIF 360

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             Y+  +YG + V+ +  + + + +A +R++G+   +P +++D+L                
Sbjct: 361  DYMFKRYGRQHVSLLGMYSTFKRRAIIRELGKVFGLPKAEIDQLVAQREW---------- 410

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                      R  D     + +  Q LE    H S HA G++I ++P+     +      
Sbjct: 411  ----------RTEDKIQGWIHKYGQLLEHFPNHLSVHAGGVLISEKPICHYAAVELPP-K 459

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVDLSLIPFDDHET 608
            D      +M   E+ GL KFD L  + L  ++ +L  + +   + + +      F+D   
Sbjct: 460  DFQTIHMDMFEAERVGLFKFDILSQRGLGHIKDALQLIEENTGKHIDIHQVERFFEDPLL 519

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKN 666
               + +  T+G F +ES  MRQ L  +Q      ++A  S+ RPG   + ++  Y  R +
Sbjct: 520  AEKIRSGDTIGCFYIESPAMRQLLGKLQCSDYLTLVAASSIIRPGVAQSGMMKQYIERYH 579

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK--EE 724
             ++K++ +HP +  +L ET GV++YQE V+++A   +G SL +AD+LRRAM  K +   +
Sbjct: 580  DRDKVLYLHPKMKELLAETFGVMVYQEDVIKVAHHFAGISLDQADILRRAMSGKYRSENK 639

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
             +K ++ F     + G  + +   ++  +  F  Y F K H+A++AV SYQ+ ++KT+YP
Sbjct: 640  FEKLRQTFFDNCRERGYEEQVTREVWRQMESFGGYSFAKGHSASFAVESYQSLFLKTYYP 699

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EF  A +        + + + Q+  +    +  P +N       + ++ +Y  L  ++G
Sbjct: 700  REFYVAVIN-NFGGFYRTEFYFQELFKTGAHVQLPCINHSQYYTNIVNDTVYVGLIHLQG 758

Query: 845  VGTTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +    A +I+ E   +  +  L DF +R+         L  L+   AL   G ++  LL 
Sbjct: 759  LEEKFAHNIITERRKNGIYRDLNDFIARLSPGM---EQLNLLIRIDALRFTGKNKKALLW 815

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
                    A ++   +     ++F      F      E+  +E+   +      ++GF  
Sbjct: 816  E-------ANFMTTRQQILEVSLFETPVLDF-QLPEFEEEPMEDYKDQL----ELMGFIV 863

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
                   +  +L    +         +   G  + +   +V+ ++  T +  R+ + TF 
Sbjct: 864  GD-----FFDLLDPKYLANTVNVGDLVHLLGKEVSMIGRLVTIKETWTIRKERMVFGTFL 918

Query: 1022 EPAKE-YEANFFP 1033
            +   +  +   FP
Sbjct: 919  DCNADWLDTVHFP 931


>gi|317133724|ref|YP_004089635.1| DNA polymerase III, alpha subunit [Ruminococcus albus 7]
 gi|315450186|gb|ADU23749.1| DNA polymerase III, alpha subunit [Ruminococcus albus 7]
          Length = 1347

 Score =  357 bits (915), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 259/925 (28%), Positives = 435/925 (47%), Gaps = 77/925 (8%)

Query: 165  QVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
            + A K  L + +LFG +  ++ LQ H    ++Y   ++  +A    +P V  N++ +  +
Sbjct: 304  ENARKEALYYSELFGKNNFFIELQFHGFEDEQYVFPRLCNIAKGLNIPCVPANDAHYTYK 363

Query: 223  EDYEAHDVLMAVAHST----VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
             D +  ++L+A +       +  +  +  +  D  L      +    D+ +A EN   IA
Sbjct: 364  TDAKRREMLVADSFKKIIETLDERSCQLFIKSDEELTEALTQILTKKDVEQAFENLRLIA 423

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG-YHAQDY 337
              C+ +L                   + + + +R   + G+E R   G  + G    Q++
Sbjct: 424  DNCNVVLPK-----EHHYPVYHLPEGETDSSYIRKLVLEGVEKRYPGGKASDGTVWDQEH 478

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV--------GPGRGSGAGSVTAYA 389
              R++ EL +I +M ++ Y L+V D++ + +K             GPGRGS  GS+  Y 
Sbjct: 479  INRMESELEIIGKMGYNHYHLVVQDYLNFGRKLGFNCPEGVGYTIGPGRGSAVGSLVCYL 538

Query: 390  LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
            L ITD+DPL+++L FER+LNP+R+SMPD D DF    R++ I Y++ KYG E V  + T 
Sbjct: 539  LGITDLDPLKYNLFFERYLNPERVSMPDIDADFANFVREDCIDYMREKYGVEGVCGVTTK 598

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR---------FRE 500
            G+L  KAA+   GR     +  V R+  +    P        + D +             
Sbjct: 599  GTLGIKAAILLAGRVNPKTHDDVQRVRAISKLVPKGAKHFTDLIDVADKSKGDIKSFMLS 658

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR-PLSQLVPMYRDVRSDLPVTQFN 559
               A     +++E +  +EGL  +   HAA ++I D   +S  V +         V    
Sbjct: 659  KYSAGSIERQIIEDASSVEGLTVNYGRHAAAVIISDTGNVSDQVAL-MSTGGAWAVQCTK 717

Query: 560  MKWIEKAGLIKFDFLGLKTLTLL-QKSLDFLAQRGVKVDLSLIPFDDHETYH-LLTTKGT 617
             +   + GL+K DFLGL  L ++             K++++     + E +  + +T  T
Sbjct: 718  EEAEAEVGLLKMDFLGLINLDIITATLRKIYRNTRRKINMNTDVHFEDEVFEGIFSTGNT 777

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
              +FQ  S GM+Q L+  +P   EDII LV+ YRPGP+  +      K+G++      P 
Sbjct: 778  DAVFQFSSDGMKQMLKEFRPSSFEDIILLVAAYRPGPMQYLSDIIAVKHGRKPESYAIPE 837

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG-- 735
            + P+L  T G  +YQEQV +I + L+GYSL +AD++RRAM KK  +E+ K+KE F+ G  
Sbjct: 838  LKPILNGTYGKTVYQEQVQEIFKKLAGYSLGQADLVRRAMSKKKLKELAKEKESFLHGDP 897

Query: 736  ------ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
                     NGI++  A  +F+ +  FA Y FNKSHAAAYA ++YQTAW+K HYP E++A
Sbjct: 898  ERGIKGCIANGINEADANILFDEMMDFASYAFNKSHAAAYAYVAYQTAWLKYHYPTEYMA 957

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A M  E    +K+  +  ++R   + +  P +N   V F    + I +  + +KGVG   
Sbjct: 958  AVM--EHSKYDKLPMYIYNSRDMGLTVKIPDINKSDVGFIAEKDSIIFGFSGMKGVGDVD 1015

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
               I+E      F SL++F SR +   L+   L++LVF GA DCFG +R  +   ++++ 
Sbjct: 1016 IEKIIEERKKGEFKSLKNFISRTN---LSIDTLKNLVFGGAFDCFGQTRKSMFSYVESL- 1071

Query: 910  KYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSV------------------ENSS 949
            K  +   ++  +K + +    +E  +  DK  L +                     E+  
Sbjct: 1072 KDIKSEIESIQSKIDVLTEKMNEDASEKDKKKLRELEKNCDEYKTKYQDLICEQGYEDKI 1131

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
             R   E+ +LG + S HP++ YK           ++      GN+I +  ++    +  T
Sbjct: 1132 GRLTAERNILGTFISDHPINSYKLE----NSVKIKDLQP---GNDITVYGLITDF-RLLT 1183

Query: 1010 RK--GSRIGWVTFSEPAKEYEANFF 1032
            +K  G         +     +A  F
Sbjct: 1184 KKSTGENFCSFNLDDGTGVIQAMVF 1208



 Score =  128 bits (321), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 65/188 (34%), Gaps = 26/188 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+  S+ +GA +   ++ +      PA+ +TD   L    EF        I+ I G 
Sbjct: 9   LHNHTDNSIKDGAQTPKELVQRAKELDAPAVTLTDHGVLTGIFEFMNACEEENIKGIPGV 68

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-----DQGKQS 128
           +  I   ++            T   +V+L   A+GY+ + + V+             K  
Sbjct: 69  EAYIKEDED-----------ETRRHLVILAKDAQGYKAIEKAVTESNQRLVTIPSMKKDI 117

Query: 129 VRICLSWLQEIGTEGL------IMLTGGSSGPIDRAFFFNS--SQVAEKRLLTFKKLFGD 180
             +  + L +   EG       I  +    G I      N+   +  +K L   K     
Sbjct: 118 PTMNKAILTKWFGEGAMGHDHTIATSACVQGVIATELTQNNKYQKNIDKALEKRKNYHNP 177

Query: 181 R--LYVNL 186
              +++ L
Sbjct: 178 SSTIFIEL 185


>gi|229916404|ref|YP_002885050.1| DNA polymerase III, subunit alpha [Exiguobacterium sp. AT1b]
 gi|229467833|gb|ACQ69605.1| DNA polymerase III, alpha subunit [Exiguobacterium sp. AT1b]
          Length = 1055

 Score =  357 bits (915), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 284/1024 (27%), Positives = 479/1024 (46%), Gaps = 97/1024 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            +HL V ++YSLL+  + L   + ++      ++AI D +  +    F        ++P+I
Sbjct: 2    IHLNVRTAYSLLQSTIRLEQYVLQMTERGSRSVAIAD-DAFYGVPTFLSYCQRYEVKPLI 60

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +   D L +            S+++  S     +    ++         +    +
Sbjct: 61   GLR-TVLRLDGLDV------------SVIVYSSNETELKEQYRII----QAGGIEGRTTM 103

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             L  L E            +S P+ R   ++        LL+F     ++L++ L   + 
Sbjct: 104  PLVVLPENWK---------ASDPVHRRRLYHQ-------LLSFVD--EEKLWLGLPAPQT 145

Query: 192  YDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             ++     Q+  +     + L+    + ++  ED E    + A+    V        ++ 
Sbjct: 146  TEQVQVLKQLRLMREELAVQLIPAPETRYMRPEDVEGFRAISAIREGEV--------MSN 197

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
            +   +    +              +    R   ++++           E  D     + +
Sbjct: 198  EDVRQKGLHVRLPSEMNDWFTTEELTELDRFEALIRLEHLPRAEGAIPELPD----ADQK 253

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L+      L+        +     + Y +R  FEL VIA+  FS YFLIV D +++A+++
Sbjct: 254  LKRLVGERLK--------SMELLKEPYIERAKFELEVIAKTGFSSYFLIVEDIVRFARES 305

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I VGPGRGS AGS+ ++AL IT++DP+R+ LLFERFLNP+R+SMPD D+DF  +RR+EV
Sbjct: 306  GIEVGPGRGSAAGSLVSFALHITEVDPVRYGLLFERFLNPERVSMPDIDLDFEDERREEV 365

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + YV +KYGH   AQI T  +  AKAA+RDV RAL M   +     K +         L 
Sbjct: 366  VSYVLSKYGHTHAAQIGTLATFGAKAAMRDVARALGMTLEEGQAASKQVKAGG-----LD 420

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
             +    +  +         +LL I+++LEGL R +S HAAG+V+  +P+ ++ P+  ++ 
Sbjct: 421  ELMSSPKQMKWFAGSQKRQQLLRIAKQLEGLPRQSSVHAAGVVLSRQPIEEVTPLQPELE 480

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
                VTQ+NMK +E+ GL+K D LGL+ L+ L+K  D + +      L  IP +D  TY 
Sbjct: 481  EH--VTQYNMKDLEEVGLLKIDLLGLRNLSRLRKMEDLIRESDALFSLKTIPLNDARTYR 538

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            LL    T GIFQ ES+GM+QAL  ++P   EDI+  +SLYRPGP+  I  Y  RK+G   
Sbjct: 539  LLARGETDGIFQFESTGMKQALRQVKPTEFEDIVVTMSLYRPGPMQFIETYAKRKHG-MP 597

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
               +HP ++ ++K T GV++YQEQVM++ + L GYS +EAD++RRA+ KK    + +++E
Sbjct: 598  YQPVHPDVEDVMKPTYGVLVYQEQVMRLLRKLGGYSYAEADLVRRAIAKKDTGTIARERE 657

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            RF+  A      + +   IF  + KFA YGFN+SHA AY++ISY+ A++K H+P  F   
Sbjct: 658  RFLQQAKAG--DQDVLAQIFSWIEKFAGYGFNRSHAVAYSLISYRLAYVKAHFPRVFHVV 715

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
            +        +K  +  +  R+  I + PP V     D  +    +   L A++G+     
Sbjct: 716  TS-------DKTTELVRLLRKDQIPVYPPDVLHGHADATLEGPGVRLGLKAVQGLTKRDV 768

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQSLDNIQ 909
              ++E   +     +      ++ K  ++  L  L+ AGALD      R +  ++++ ++
Sbjct: 769  DRLIEL--NGQLKDVRTLQETMEWKNKDQLKLRRLLGAGALDRMYHGDRTRAFEAVERLR 826

Query: 910  KYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
            + A             +          K+    +S E        E+  LG +    PL 
Sbjct: 827  EEAGTHFLPDELSSLGL-------KQKKVKEPNWSEE--------EREALGTWVVHSPLT 871

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
                 L  +GI+        + G N  L   V   +   T+K  R+G +   +   + E 
Sbjct: 872  A----LPDIGIEP-STIEEVMNGTNGYLVVYVDDVRTFMTKKQERMGVLMVDDGMTQDEV 926

Query: 1030 NFFP 1033
              FP
Sbjct: 927  VVFP 930


>gi|15829190|ref|NP_326550.1| DNA polymerase III DnaE [Mycoplasma pulmonis UAB CTIP]
 gi|14090134|emb|CAC13892.1| DNA POLYMERASE III, ALPHA CHAIN [Mycoplasma pulmonis]
          Length = 981

 Score =  356 bits (914), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 273/1025 (26%), Positives = 471/1025 (45%), Gaps = 106/1025 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F++L  +S YS L+  + +N+++     +    + +TDT N   A +F        I+ +
Sbjct: 4    FINLHTNSEYSFLDSLIRINDLVQYAKENNLKTLVLTDT-NFHGADKFYFLCKKNNIKAV 62

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            +G  +++D +                  ++LL     G++ L+ L S           + 
Sbjct: 63   LGLDIEVDHK-----------------RVILLAKNTSGFRSLM-LFSESNRNG-----LE 99

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I L+ L++   + LI++     G        +  ++A+  +           Y       
Sbjct: 100  ISLNQLEKT-QDDLIIINHPRLGF-------SMDEIAQSSIK--------NFY----NTS 139

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
              D+   S  V                  +  + +   D  +    ++  + +    +  
Sbjct: 140  NNDQDPLSLYV------------------VENKLFNVKDNPILEMLNSTNNNQKNKGIEF 181

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              +         +   + + ++      ++    L            K  +++    ++ 
Sbjct: 182  KGFSHYAPISELMQKRINDIVDQCNFEYKKPEITLP-----------KFMNNLGISSKDF 230

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L          +  +          + +QR+ +EL+VI+++ F  YFLI+ D I WAKKN
Sbjct: 231  LVKILKESWHEKSHKL-----QKYDNAKQRIKYELSVISKLGFEDYFLIIWDIINWAKKN 285

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I +GPGRGS +GS+ +Y L IT+++PL F+L FERFLN DR+SMPD DID   +RRDE+
Sbjct: 286  KIAIGPGRGSASGSLVSYLLNITEVNPLEFNLFFERFLNEDRISMPDIDIDVQDNRRDEL 345

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            + Y+  KYG + V+ I TF  L AK+++RDVGR L +  ++++ + K   +  A     +
Sbjct: 346  LNYIFEKYGEQNVSTISTFQFLGAKSSIRDVGRFLGINIAKINEISK---HIDAQQSLAE 402

Query: 491  AIADDSRFREARLAD--PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
               ++   R        P   +L++ + K+EGL R   THAAGI+I +  ++  +P +  
Sbjct: 403  QYENNQSLRSYLQNQEDPIFKKLIDFAMKIEGLPRQTGTHAAGIIISNEKINNYIPTF-- 460

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD-DHE 607
            + ++   +Q++M+ IEK G +K DFLGLKTL+ +    + +AQ        +  +  D +
Sbjct: 461  IVNNKNQSQYSMENIEKMGFLKIDFLGLKTLSTITHIEERIAQFEQIDFDKINSYIIDEK 520

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
               +L  K TLGIFQ+ES GM   +  +  D  +DI A +SLYRPGP+  I VY   K  
Sbjct: 521  IKKVLENKSTLGIFQIESPGMTNTINKINVDDFKDIYAAISLYRPGPLKFISVYAKNKKN 580

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             + I  I    D ++K+T G+I+YQEQ+M+IAQ +SG+  +EADVLR+A+ KK    +D+
Sbjct: 581  PKNIKKIIEPYDNIVKDTYGIIVYQEQIMEIAQKVSGFKFTEADVLRKAISKKDITLLDE 640

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             K +FI G  KNG  K +  NI+  +  FA YGFNKSHA AYAV+ Y+  + K HYP+ F
Sbjct: 641  MKAKFIQGGIKNGHPKNVVENIYLTIEDFAQYGFNKSHAVAYAVLVYKMLYYKAHYPLFF 700

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
             ++ +     N + +K +  +A++ NI    PS+N       +  N ++  L  IKG G 
Sbjct: 701  YSSLIKTNHTNQDNLKTYFLEAKKNNIAFYSPSINNVSEQNILSKNEMFLPLIMIKGFGP 760

Query: 848  TTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 +  +   +  + S +DF  R    +L +  +E+L+ A AL  FG +   LL    
Sbjct: 761  AAYNKVYKDFQENGLYKSFDDFIQRAWKMELGKANIETLIKANALREFG-NMKDLLTLFK 819

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG-FYFSG 965
             + +    +         +       +   ++   K S  +     +NE+  LG FY S 
Sbjct: 820  EVIEDKFEIVSKLAKVQGD---DIDISNFFQLEFSKNSSRDIEFERKNEEEYLGYFYNS- 875

Query: 966  HPLDVYKPILRKMGIKGYE------ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
                   P   +   +  E             G    L  ++  K+   T+    I  + 
Sbjct: 876  -------PSQNENSNQNLENEDLTINLKNMHPGTEHVLDILITQKKSIMTKDDHLIKRLE 928

Query: 1020 FSEPA 1024
            F + +
Sbjct: 929  FEDDS 933


>gi|313674487|ref|YP_004052483.1| DNA polymerase iii, alpha subunit [Marivirga tractuosa DSM 4126]
 gi|312941185|gb|ADR20375.1| DNA polymerase III, alpha subunit [Marivirga tractuosa DSM 4126]
          Length = 1041

 Score =  356 bits (914), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 236/1034 (22%), Positives = 427/1034 (41%), Gaps = 115/1034 (11%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  HS YSL  G LS+  ++++   +   ++A+TD N+     EF+ K   AGI+P+ G 
Sbjct: 3    LNCHSFYSLRYGTLSVEALVNQAVLNGVESLALTDINSTTGVTEFASKCVEAGIKPLAGV 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++                        V +     G++ + EL+++  L +       + L
Sbjct: 63   EI----------------RKNDTLLYVAIAQDLAGFREINELLTKTNLSE-------MPL 99

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE-KRLLTFKKLFGDRLYVNLQRHRGY 192
              LQ      + ++    +  + +    +         L  +K  F              
Sbjct: 100  P-LQSPHFNHVCVIYPTHN--VPQILQKHEYIGIRPAELKRYKPAF-------------- 142

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
                       A+  +  LV      F +++++  H +L  +  + ++S     +     
Sbjct: 143  -----------AHKAD-KLVCLYPVTFSTKQEFNLHKLLRCIDENILLSHLKENQQAAKG 190

Query: 253  YLKNRSEMVSI-FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
                  + + + + D P  + NT  +  +CSF     +P   +           E++  L
Sbjct: 191  EFMIPIKELKLLYKDYPHIIRNTELLFDQCSFAFDFKSPKNKKCYT----SSYYEDKILL 246

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
               A+ G +            + +  +QRL  EL +I +M+F  YFL   D I+ +    
Sbjct: 247  ETLALEGFK-------DRFSANNKAAKQRLYDELEIIHKMQFGCYFLTTWDIIRHSLSKG 299

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
                 GRGSGA S+ AY L IT++DPL  +L F RFLN  R S PDFDID+    RD++I
Sbjct: 300  -YFHVGRGSGANSLVAYCLKITEVDPLELNLYFARFLNNKRTSPPDFDIDWSWTDRDDII 358

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             Y+  ++G E      T    + ++ +R++G+   +P  ++D+L +  P+       ++ 
Sbjct: 359  DYIFKRFGREHTGFCGTVTDFKHRSTVRELGKVFGLPKEELDQLSRTSPDHLPSDNLVKN 418

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
            I                       + L G     S H+ GI I + P++    M      
Sbjct: 419  I-------------------QHYGKMLSGFPNQLSMHSCGIYITEEPIANYTAM-NIYPK 458

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---GVKVDLSLIPFDDHET 608
             +P  + +M   E   L K D L  + L  ++++++ + +     + +  +     D + 
Sbjct: 459  GVPTCEIDMYMAEAFHLEKIDILSQRGLGHIKEAVEIVKENKGIDIDIADTKSFKKDEKC 518

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKN 666
              LL T  TLG F +ES  MR  L  ++ +  E ++A  S+ RPG   + ++  Y  R  
Sbjct: 519  NELLRTGKTLGCFYIESPAMRGLLRRLKCNSYETLVAASSIIRPGVAQSGMMREYVERHR 578

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM--GKKIKEE 724
               +I   HP+ +  LK+T GV++YQE V++IA   +   L++ADVLRR M    + + E
Sbjct: 579  DPSRIKYFHPVFEEQLKDTYGVMVYQEDVIKIAHHFAKLDLNDADVLRRGMSGKSRSQRE 638

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            MDK K +F S  +  G  K +   ++  +A FA Y F KSH+A+YAV SYQ+ ++K +YP
Sbjct: 639  MDKVKNQFFSNCAALGYPKEMVEEVYRQIASFAGYSFCKSHSASYAVESYQSLFLKAYYP 698

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A +        + + +  +AR     I  P VN    +  + +  I+  L  +  
Sbjct: 699  LEFITAVIN-NNGGFYRPEVYINEARMLGAHIEAPDVNYSYANASLKETTIHLGLDQVMH 757

Query: 845  VGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +       I+        F SL D   R D   LN   +   ++ GAL     S+ QL+ 
Sbjct: 758  LSKRGIESIVNTREKTGTFSSLSDLLDRTD---LNFDDVSYAIYTGALRSISRSKGQLII 814

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
                   +     ++       +F  +    S +I        +      +E   LG+  
Sbjct: 815  EAKQFFSHEPAKTEDLQ-----LFDLKPKEISYEI-----DEGDMFEDAFDEMEGLGYPV 864

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ--QKKTRKGS-RIGWVTF 1020
            S  P ++ K      G     E         +++   ++S +      + G  ++ + T+
Sbjct: 865  SVSPFNLLKT--NYRGSVFASELYQNKD-KTVKMLGYLISIKDVPIVNKDGKTKMNFGTW 921

Query: 1021 SE-PAKEYEANFFP 1033
             +     ++   FP
Sbjct: 922  IDVYGGYFDTVHFP 935


>gi|255535285|ref|YP_003095656.1| DNA polymerase III alpha subunit [Flavobacteriaceae bacterium
            3519-10]
 gi|255341481|gb|ACU07594.1| DNA polymerase III alpha subunit [Flavobacteriaceae bacterium
            3519-10]
          Length = 1017

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 234/1029 (22%), Positives = 425/1029 (41%), Gaps = 110/1029 (10%)

Query: 15   QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
              H+ +SL  G LS+  ++ + +      + +TD N + +  EF ++     I+PI G +
Sbjct: 4    NCHTYHSLRYGTLSVTELVKQASECGAEQLVLTDINTVTAVYEFKKECEKFNIKPIAGVE 63

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            +              +     +   + +   A+G   +  L++R                
Sbjct: 64   I--------------RKGNELLY--ITIAQDADGLAEINRLLTRYN-------------- 93

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR 194
                                + +     +       L    +   +  ++ +      + 
Sbjct: 94   ---------------CDGAELPQTSPDFNKVTVIYPLENIPESLKENEFIGI-----KET 133

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                 +          +V  +     ++++Y  H VL A++++T++S+         + +
Sbjct: 134  QLNLLISPKWQRFLNRMVMLHPVTVSTKKEYNLHRVLRAISNNTLISKLTEDDCCAPNEV 193

Query: 255  KNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
                 E++  F   P+ +ENT  I   CSF      P    F        +  +   LR 
Sbjct: 194  FKPVEELLESFKMYPQIIENTQRILDFCSFEFDFKKPKNRTFFT----GNKASDAQLLRK 249

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
             A  GL+ R  +        ++   +R + EL VI  + FSGYFLI  D IQ++K     
Sbjct: 250  LAYEGLKKRYPE-------ESEAVLKRTEKELKVIDDLNFSGYFLITWDIIQYSKSRGFM 302

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
               GRGSGA S+ +Y L ITDI P+   L FERFLN  R S PDFDID+    RDE++ Y
Sbjct: 303  -HVGRGSGANSIVSYCLGITDICPIELDLYFERFLNMHRKSPPDFDIDWSWKERDEILNY 361

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            +  KYG + VA   T    + ++  R+VG+A  +P  ++D L     +            
Sbjct: 362  IFGKYGKDHVAFCGTNVEFKYRSIFREVGKAFGLPKEELDALATKPMDT----------- 410

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                       +  V  + +  Q LE      S H+ GI+I + P++    +        
Sbjct: 411  --------HDTNSVVKLVHKYGQLLEKFPNQRSMHSCGILISEEPITNYTALEMPP-KGF 461

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG---VKVDLSLIPFDDHETYH 610
             + QF+M   E  G  KFD L  + L  +  ++  + +     V +D +    +D     
Sbjct: 462  AIVQFDMHVAEDIGFEKFDILSQRGLGTINDTVKLIQKNRGITVDIDDTHTFKNDQNCNA 521

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGK 668
             L+   T+G F +ES  MR  L  ++ D  + ++A  S+ RPG   + ++  Y  R N  
Sbjct: 522  YLSIGKTIGCFYIESPAMRGLLRRLKCDNYKTLVAASSIIRPGVAQSGMMKEYIFRHNNP 581

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE--EMD 726
             +    H +    L ET G+++YQE V++IA    G S  + D+LRRAM  K +    + 
Sbjct: 582  TQFEYFHDVFKEHLGETYGIMVYQEDVIKIALHFGGLSADDGDILRRAMSGKGRSLAALQ 641

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K K+ F     + G  + ++  ++  +  FA Y F K+H+A+YAV SYQ+ ++K +YPVE
Sbjct: 642  KVKDHFFESCREKGHPEKLSQEVYRQIESFAGYSFCKAHSASYAVESYQSLYLKVYYPVE 701

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+ +++        + + +  + R     I  P VN   V+  V    +Y     I+ + 
Sbjct: 702  FMVSAIN-NGGGFYRTEVYVHECRMSGGVIHNPCVNKSGVETTVFGVDVYLGFMHIENLE 760

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            +  A  I +    +  + SLE+F  RV    +    L++L+F G     G  + +LL   
Sbjct: 761  SGMACFIFDERIRNGAYTSLENFIKRVP---VGIETLQTLIFVGGFRFTGKQKNELL--- 814

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
                +    +   +       F        +   L++   E++      E  +LGF  S 
Sbjct: 815  ---IEARLLMISFKPQNRLPSFFETPVQEYELPNLKRNRFEDAFD----EIEILGFAVSC 867

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
             P ++ +   +  G     + +       +++ A ++S++   T KG+ + + T+ +   
Sbjct: 868  SPFELLQT--KYRGGVRAMDLI-KFHKKQVKMLAYLISRKHVPTTKGT-MFFGTWIDADG 923

Query: 1026 E-YEANFFP 1033
              ++   FP
Sbjct: 924  NYFDTAHFP 932


>gi|300772563|ref|ZP_07082433.1| DNA polymerase III alpha subunit [Sphingobacterium spiritivorum ATCC
            33861]
 gi|300760866|gb|EFK57692.1| DNA polymerase III alpha subunit [Sphingobacterium spiritivorum ATCC
            33861]
          Length = 972

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 229/1033 (22%), Positives = 429/1033 (41%), Gaps = 117/1033 (11%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L   + +S   G  S   +++   A     +A+T+ NN   + +F  K    GI+PI+G 
Sbjct: 3    LNCKTWFSYHYGTFSSKQLVEDARALDIHTLALTNINNTADSWDFVLKCREQGIKPILGT 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY-LLDQGKQSVRIC 132
            ++                    V   +LL     G  ++ + +S      +       + 
Sbjct: 63   EI----------------RNDHVFCYILLARNETGLFQINQFLSAYNQRKENFPAEPELS 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
               L  I   G   ++    G                RL   + L  DR           
Sbjct: 107  TEHLWIIYRYGQKSVSALREGE-----LIGLRPQDLNRLELQQDLAADRF---------- 151

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
                               V  +   F     +  H +L A+A +T++S+     +    
Sbjct: 152  -------------------VMLSPVTFQDRTYFNLHRLLRAIARNTLLSKLLPEDIAGSD 192

Query: 253  YLKNRSEM-VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +       V  F+  P  +  T+++A  C   +++      ++     +D +      L
Sbjct: 193  EMLQSEVELVRQFARFPTVISRTIQVADSCHISMELKTDKNRKYFTTTEEDDRH----LL 248

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            R  A+ G         +  G   ++  +R++ EL +I +  F+ YFLI+ D +++A +  
Sbjct: 249  RKLAMEGC-------VMRYGTEHKEAFERVEKELKMIGKQGFNAYFLIIWDILRYAHERG 301

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
                 GRGSGA S+ AY L ITD+DP++  L FERFLNPDR S PDFDIDF    RD + 
Sbjct: 302  FY-HVGRGSGANSIVAYCLRITDVDPIKLDLYFERFLNPDRSSPPDFDIDFSWKDRDAIF 360

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             Y+  +YG + VA +  + + + +A +R++G+   +P +++D+L                
Sbjct: 361  DYMFKRYGRQHVALLGMYSTFKRRAIIRELGKVFGLPKAEIDQLVAQREW---------- 410

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                      R  D     + +  Q LE    H S HA G++I ++P+     +      
Sbjct: 411  ----------RTEDKIQGWIHKYGQLLEHFPNHLSVHAGGVLISEKPICHYAAVELPP-K 459

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVDLSLIPFDDHET 608
            D      +M   E+ GL KFD L  + L  ++ +L  + +   + + +      F+D   
Sbjct: 460  DFQTIHMDMFEAERVGLFKFDILSQRGLGHIKDALQLIEENTGKHIDIHQVERFFEDPLL 519

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKN 666
               + +  T+G F +ES  MRQ L  +Q      ++A  S+ RPG   + ++  Y  R +
Sbjct: 520  AEKIRSGDTIGCFYIESPAMRQLLGKLQCSDYLTLVAASSIIRPGVAQSGMMKQYIERYH 579

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK--EE 724
             ++K++ +HP +  +L ET GV++YQE V+++A   +G SL +AD+LRRAM  K +   +
Sbjct: 580  DRDKVLYLHPKMKELLAETFGVMVYQEDVIKVAHHFAGISLDQADILRRAMSGKYRSENK 639

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
             +K ++ F     + G  + +   ++  +  F  Y F K H+A++AV SYQ+ ++KT+YP
Sbjct: 640  FEKLRQTFFDNCRERGYEEQVTREVWRQMESFGGYSFAKGHSASFAVESYQSLFLKTYYP 699

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
             EF  A +        + + + Q+  +    +  P +N       + ++ +Y  L  ++G
Sbjct: 700  REFYVAVIN-NFGGFYRTEFYFQELFKTGAHVQLPCINHSQYYTNIVNDTVYVGLIHLQG 758

Query: 845  VGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +    A +I+     +  +  L DF +R+         L  L+   AL   G ++  LL 
Sbjct: 759  LEEKFAHNIITERKKNGIYRDLNDFIARLSPGM---EQLNLLIRIDALRFTGKNKKALLW 815

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
                    A ++   +     ++F   +  F      E+  +E+   +      ++GF  
Sbjct: 816  E-------ANFMTTRQQILEVSLFETPELDF-QLPEFEEEPMEDYKDQL----ELMGFIV 863

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
                   +  +L    +         +   G  + +   +V+ ++  T +  R+ + TF 
Sbjct: 864  GD-----FFDLLDPKYLTDTVHVRDLVHLLGKEVSMIGRLVTIKETSTIRKERMVFGTFL 918

Query: 1022 EPAKE-YEANFFP 1033
            +   +  +   FP
Sbjct: 919  DCNADWLDTVHFP 931


>gi|146301311|ref|YP_001195902.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101]
 gi|146155729|gb|ABQ06583.1| DNA polymerase III, alpha subunit [Flavobacterium johnsoniae UW101]
          Length = 1017

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 242/1029 (23%), Positives = 425/1029 (41%), Gaps = 108/1029 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  HS +SL  G + L++++ + A     A A+TD N +    +F +   A+GI+P++G 
Sbjct: 3    LNCHSFHSLRYGTIPLDDLIRQTADCGVTAAALTDINTVTGIYDFIKGCEASGIKPLVGI 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +     +                   + L   A G  ++   ++          +     
Sbjct: 63   EFRCRHK----------------FRYIGLAKNAAGLAQMNRFLT----DHNFTGAP---- 98

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              L E                       N+               GD  ++ +      D
Sbjct: 99   --LPEKA--------PAFESVYFIYALENAPAQL-----------GDNEFIGI----RPD 133

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +     + +L       +V     +F ++ +Y  H +L AV  + ++S+           
Sbjct: 134  QLSRLYMPELKKKIS-KMVILRPVVFRTKREYNLHRILRAVDLNELLSKLGSEDCCQKSD 192

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            +      ++        +                         +K     +  +   L  
Sbjct: 193  MMIPETELTDLYKDYPLIIQNTRYIIEHCN---FQYDFESPKNKKHYTKNKAGDIALLTT 249

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
             A  GL           G H  + + R++ EL VI  ++F GYFLI  D I+++      
Sbjct: 250  LAEEGLVW-------RYGRHNPEAKARVEKELKVINDLEFCGYFLITWDIIRYSNSRGFL 302

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
               GRGSGA S+ AY L ITDI PL   L FERFLN +R S PDFDID+    RD +++Y
Sbjct: 303  -HIGRGSGANSIIAYCLGITDICPLELDLYFERFLNENRKSPPDFDIDWSWKERDVILKY 361

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            + ++YG+E VA   T    + ++  R+VG+   +P  ++D L K                
Sbjct: 362  IFDRYGYENVAFCGTNVEFKYRSIFREVGKVFGLPKDELDLLAKNPM------------- 408

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                  +    +  V  + +    LE      S H+ GI+I + PL+   P+        
Sbjct: 409  ------KLHQTNSIVSLVQQYGMMLEKYPNMRSMHSCGILISEEPLTNYTPLEMPP-KGF 461

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPF--DDHETYH 610
            P+  F+M   E  G  KFD L  + +  +  ++  + Q RG+++++       ++     
Sbjct: 462  PIVLFDMHTAEDIGFDKFDILSQRGIGHIDDTVKIIEQNRGIRINIRDTRLSKNEQSANV 521

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGK 668
             L    T+G F +ES  MR  L  ++ D  + ++A  S+ RPG   + ++  Y  R N  
Sbjct: 522  YLAQGRTIGCFYIESPAMRGLLRRLKCDNYKTLVAASSIIRPGVAQSGMMKEYIFRHNNP 581

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             K    HP+ +  L ET G+++YQE V++IA    G S ++ D+LRRAM  K + +   Q
Sbjct: 582  SKFEYFHPVFEKELGETYGIMVYQEDVIKIALHYGGLSAADGDILRRAMSGKGRSKAALQ 641

Query: 729  KER--FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K +  F   AS  G  + ++  I+  +  FA Y F K+H+A+YAV SYQ+ ++K HYPVE
Sbjct: 642  KVKDDFFVAASAKGHPEELSREIYRQIESFAGYSFCKAHSASYAVESYQSLYLKVHYPVE 701

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+ A +  +     + + +  +AR     I  P VN    +  +    IY     ++G+ 
Sbjct: 702  FMVAVINNQ-GGFYRTEIYVHEARMAGAVIHTPCVNKSQYETSLYGTDIYLGFMHLQGLD 760

Query: 847  TTTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            +  ++ I  E   +  + SLEDF +RV     N +V   L+F GA    G ++ QLL  +
Sbjct: 761  SKLSQFIAYERDRNGIYKSLEDFINRVPMGIENVKV---LIFIGAFRFTGKTKNQLLVQV 817

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
              +    +   +        +   +         LE+   E++      E  +L F  S 
Sbjct: 818  SLLMNNFKPENRGL------MLIEQPAKEFKLPVLERSVFEDAFD----EIELLNFPISC 867

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
               D+ +   R  G     + +       +R+ A ++S +Q  T++G+ + + T+ +   
Sbjct: 868  TVFDLLQT--RHRGDVMVRDLLKY-HKKQVRMLAYLISTKQVPTKRGN-MYFGTWIDHEG 923

Query: 1026 E-YEANFFP 1033
              ++   FP
Sbjct: 924  AYFDTAHFP 932


>gi|330752736|emb|CBL88199.1| DNA polymerase III subunit alpha [uncultured Leeuwenhoekiella sp.]
          Length = 1013

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 237/1037 (22%), Positives = 441/1037 (42%), Gaps = 115/1037 (11%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H+ +SL  G LS   +LD   A+ Q +IA+TD NN  + L+F  KA    I+P+IG 
Sbjct: 3    LNCHTYFSLRYGTLSEEELLDLALANNQSSIALTDINNTSACLKFISKARDKNIKPVIGV 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR-MYLLDQGKQSVRIC 132
                            +         ++L     G+  + + +S+ ++          + 
Sbjct: 63   DF--------------RNGIQQCY--IMLAKNNSGFLAINDFLSKFLHDKTAFPDDAPVL 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
             + +                               EK L   K  F +  Y+ +      
Sbjct: 107  ENVITIYS--------------------------FEKALELDKNNFEENEYIGI---GIK 137

Query: 193  DRYRESQVVQLAY--THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVT 249
            D  +    ++ +    +E  LV      F +++DY  H +L A+  + ++S+     +  
Sbjct: 138  DLNK----LRFSRYSNYEKKLVLLQPVSFRNKKDYNIHRLLRAIDTNQLLSKLPKEEQAD 193

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P+  + +   ++S F + P  L+N++EI   C+               K+    ++ +  
Sbjct: 194  PEEKMLSPDLLISAFKEYPFILKNSIEILNGCTIHFDFSKS-RKPQNLKKVFSSEELDFQ 252

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            +L      GL+                 ++RL  EL++I    +  +FLI    I++A+ 
Sbjct: 253  KLNELCKEGLKK-------RYTIITPQIKERLQKELSLIKSQDYVSFFLINWKIIEYARS 305

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
             N     GRGSGA S+ AY L ITD+DP+   L FERF+N  R S PDFDIDF    R++
Sbjct: 306  KN-YFYVGRGSGANSIVAYLLGITDVDPIELDLYFERFMNEFRSSPPDFDIDFSTWDRED 364

Query: 430  VIRYVQNKY-GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            +  ++ N++  + +VA + ++ + Q   A+R++G+   +P  ++D+L K           
Sbjct: 365  ITSFIFNEFGKNNQVALLGSYVTFQHSGAVRELGKVFGLPKYEIDKLSKGSFIG------ 418

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
               + D ++             +L+ S  L+G   + S HAAGI+I ++ +      +  
Sbjct: 419  -NKLDDIAKL------------ILKYSSYLDGKPNYLSIHAAGILISEKSIHYFSATHLP 465

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP-----F 603
               + P  QF+M   E  GL KFD LG + L  ++ SL+ + +    + L  I      F
Sbjct: 466  P-KNFPTVQFDMHIAEDVGLYKFDILGQRGLGKIKDSLEIIKKNQPHIKLPDIHETKQFF 524

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
             D     +++    +G F +ES  MR  L+ ++ +    ++A  S+ RPG   + ++   
Sbjct: 525  HDPLINKMISEADCVGCFYVESPAMRMLLKKLRVNDYITLVAASSIIRPGVAKSGMMREY 584

Query: 664  RKNGKEKIVSI--HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
                ++K      HP++  ++ +T G+++YQE V+++A   +   L EADVLRR M  K 
Sbjct: 585  IIRHRDKKRCEDAHPILLQIMPDTYGIMVYQEDVIKVAHHYAKLDLGEADVLRRGMSGKY 644

Query: 722  KEEMDKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            +   + Q    +FI+   +NG    +   ++  +  FA Y F K H+A+YAV SYQ+ ++
Sbjct: 645  RSRQEFQDVKNKFINNCIQNGEKIEVVNEVWRQIESFAGYAFAKGHSASYAVESYQSLYL 704

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K ++P+E++ A++          + +  +AR+    I  P +N   ++  + +  IY   
Sbjct: 705  KCYFPLEYMVATIN-NGGGFYTTETYIHEARKKGATIEAPCINRSNIETTINNKTIYLGF 763

Query: 840  AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
              ++ +  TT   I+       + SL DF  R++ +      L+ L+   AL  FG  + 
Sbjct: 764  QHLENLEKTTMVKIINERICGNYKSLTDFTERINIQI---EQLDILIRIDALRIFGKDKR 820

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS-DKITLEKFS-VENSSVRFENEQR 957
             LL     I+  A   E         IF      F   +  + +     +          
Sbjct: 821  TLLWEAYYIENTAPKYEH-----QHRIFNISTQEFKLPQFEITQLENAFDQLELLTY--- 872

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
                Y   +P  + +    K   +   E + +     I + A +V+ ++  T    ++ +
Sbjct: 873  --SLY---NPFILLEE---KPNQQYLSEHLKSHLNKIISIYAYLVTVKRTSTSNKKQMYF 924

Query: 1018 VTFSEPAKE-YEANFFP 1033
             TF + +    +   FP
Sbjct: 925  GTFLDKSGNWVDTVHFP 941


>gi|326800819|ref|YP_004318638.1| DNA polymerase III subunit alpha [Sphingobacterium sp. 21]
 gi|326551583|gb|ADZ79968.1| DNA polymerase III, alpha subunit [Sphingobacterium sp. 21]
          Length = 980

 Score =  354 bits (908), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 225/1029 (21%), Positives = 440/1029 (42%), Gaps = 106/1029 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L VHSSYSL  G + L+ ++++        + +TD NN  + ++F  KA  AGI+ ++G 
Sbjct: 3    LNVHSSYSLRYGTIDLDVLIEETRKLGISEMVLTDINNSSACMDFILKARVAGIRALVGI 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +               +     +   + +    +G + L + ++                
Sbjct: 63   EF--------------RKEDQLLY--IGIARNRKGMKELNDFLT---------------- 90

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
                       ++L    +   ++A+     +     L        +  YV ++      
Sbjct: 91   -----YHQLCNLVL-PERAPVFEQAYVIYPFKAVSLMLA-------EHEYVGVRPQDINQ 137

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
             +R    +      +  LVA  +  F  ++ Y  H  L A+  +T++++ +   +  +  
Sbjct: 138  LFRLDMAL-----IQRKLVALYSVTFQDKKHYRLHQYLRAIDQNTLLTKVNEIDICQETE 192

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
                   +     L    E  ++ A +             R  ++   D +  +   L  
Sbjct: 193  SLRP---LEELQRLYSGYEYLLDNAHQLLANCSTDDYHFGRLNKQTFTDSKANDAILLEK 249

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
              +AG+  R   G +         +Q+++ EL V+ +M F  YFLI  D I +++     
Sbjct: 250  LTLAGMHDRYGSGNM-------QAKQKIEAELAVVKQMDFCAYFLITWDVINYSRSRGFY 302

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
               GRGSGA S  AY L ITD+DP+   L FERFLN  R S PDFDID+   +R+E+  Y
Sbjct: 303  -HVGRGSGANSTVAYCLGITDVDPIALDLYFERFLNSKRSSPPDFDIDYSWHQREEIQAY 361

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            +  +YG      + T  + + ++ +R++G+ L +P S++D                    
Sbjct: 362  LLKRYGIAYTGLLGTISTFKGRSVIREIGKVLGLPKSEIDSFT----------------- 404

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
             D         +P+  +++ + + ++G+    S HA G+++ + P++    +    ++  
Sbjct: 405  -DPTQDAVNQDNPTFRKIMAVYELMDGMPNQRSIHAGGVLVSEEPITFYTALDLPPKAMP 463

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ---RGVKVDLSLIPFDDHETYH 610
             V  ++M   E  GL KFD L  + +  ++++++ + Q   + V +        D +   
Sbjct: 464  TVQ-WDMYAAEAIGLDKFDILSQRGIGHIKEAVELIRQNKGKSVDIHAVKSFLIDEQINR 522

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGK 668
             L    ++G F +ES  MRQ L+ +Q      ++A  S+ RPG   + +   Y    +  
Sbjct: 523  RLGASDSIGCFYIESPAMRQLLQKLQCRDYLTLVAASSIIRPGVASSGMMRNYIYYFHHP 582

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            ++++ +HP++   LKET GV++YQE V+++    +G  L++ADVLRRAM  K +     Q
Sbjct: 583  DEVIYLHPVMKEQLKETYGVMVYQEDVIKVCYHYAGLDLADADVLRRAMSGKYRSRDAFQ 642

Query: 729  K--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            K  ++F   A   G  +     ++  ++ FA Y F+K+H+A++A+ SYQ+ ++KT++P E
Sbjct: 643  KLVDKFFLSAKTIGRDEATTEEVWRQISSFAGYSFSKAHSASFAIESYQSLYLKTYFPQE 702

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+ A +            +  + ++    +  P VN       +    +Y  L  I+G+ 
Sbjct: 703  FMVAVLN-NYGGFYARWLYVHELKKTGATVHLPCVNNSEEKVTINGRDVYLGLIGIQGLN 761

Query: 847  TTTARHI-MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                + I  E   + PF  L DF  R D   +    L  L+  GAL   G ++ +LL   
Sbjct: 762  EHFIKLIPCERVTNGPFQDLTDFIRRTD---IGLEQLAILIKVGALRFTGRTKKELLWDS 818

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
                  +   ++++      +FA      + + T+     E        E  +LG+  + 
Sbjct: 819  HLYMGGSVKPKRDKE-----LFA----IVNKQYTMPALPDE-RLEDAYQELDLLGYPLTL 868

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAK 1025
               D+ K   R  G    ++ + T  G  +++  + V ++  + +   ++ + TF +   
Sbjct: 869  TMFDMLKTSYR--GDVMAKDLL-THVGQTVKMVGLYVCEKTVRMKNQKKMWFGTFLDVHG 925

Query: 1026 E-YEANFFP 1033
              ++   FP
Sbjct: 926  NFFDTTHFP 934


>gi|325971353|ref|YP_004247544.1| DNA polymerase III subunit alpha [Spirochaeta sp. Buddy]
 gi|324026591|gb|ADY13350.1| DNA polymerase III, alpha subunit [Spirochaeta sp. Buddy]
          Length = 970

 Score =  354 bits (907), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 254/1032 (24%), Positives = 435/1032 (42%), Gaps = 119/1032 (11%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA----GIQP 69
            L + +SYSLL G +  N + D++       +AITD ++L                  I+ 
Sbjct: 5    LALTTSYSLLWGTMQPNRLFDQLKQWNVGKVAITDRDSLCG----YPACREEAQRCNIEL 60

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV--STAEGYQRLIELVSRMYLLDQGKQ 127
            I  C   +    +                  L     + +GY++L  L+++         
Sbjct: 61   I--CAACLTQGSD-----------------TLYAFVQSQKGYEKLCLLLTQRAQDPSFSY 101

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
               +         ++GL++ T         A   ++   A+K LL +  +    L     
Sbjct: 102  LPSLLRE------SDGLVLAT-------TSAVLLHAF--AQKNLLVYAAITPSCL----- 141

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                       + VQ A    LPL+A +++L L +ED E H +L  +     V       
Sbjct: 142  -----------KAVQTARHLALPLLACDDALLLEKEDKEVHRILRCMDLHKTVGSLQEED 190

Query: 248  VTPDHYLK-NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  +  +  +    FS  PEA++NT            + A           +   ++
Sbjct: 191  CAAQCNVLLDPDQWNQAFSCWPEAVDNTN----------LLQAYDPFPSSLIFPEYPVED 240

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               EL  + + G E       +  G       +R+ +EL +I    F+ YFL++ D +Q 
Sbjct: 241  AAKELEARVLKGAE-------VRYGEVNDAIMERITYELAIIRDKGFAPYFLVMHDIVQM 293

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
            + +       GRGSGA S+ +Y L IT++DPL + L FERFL+P R+  PD D+DF  D 
Sbjct: 294  SSRT-----CGRGSGAASIVSYCLFITNVDPLAYHLYFERFLSPSRLDPPDIDVDFAWDE 348

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            RD V   V  ++G +  A++      + + A+R+ GR   +  +Q+    K +       
Sbjct: 349  RDGVFAAVFERFGIDHCARVANHNCFRLRGAVRETGRCYGLSDTQITEAEKKLFISGQKD 408

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
            +                 DP    +  I+ KLEGL +  S H  G+VI  +P+    P+ 
Sbjct: 409  LD----------------DPLWQTICRIATKLEGLPKEISMHCGGLVITPKPVHCYAPLR 452

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDD 605
                   P+  +  +  E AG +K D LG ++L +++ +L+ L +           P +D
Sbjct: 453  LSS-DGYPLLAWEKEGTEMAGFVKIDLLGNRSLAVIRDTLENLKEEELSIDQRLWHPTED 511

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T   L    ++G+F +ES  MRQ  +       E I+   S+ RP     I  Y  R 
Sbjct: 512  GPTIAALEKGDSMGVFYIESPAMRQLQKKTGRGDFEHIVIHSSIIRPAANKFIAEYVERL 571

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
             GK K   +HP +  +L ET G++ YQE V + A  L+G++ ++AD LR+ + KK   E 
Sbjct: 572  RGK-KWEPLHPRLSYILDETYGILCYQEDVSKTAVALAGFNEADADKLRKVIAKKAGGEK 630

Query: 726  DKQKER-FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
             +   + F  G   N +S+     I+E++  F  Y F K H+A+YA++S+Q+A+++ H+P
Sbjct: 631  LRVYRKQFFDGCKANAVSEQTTQQIWEMMLSFDGYSFCKPHSASYAMVSFQSAYLRVHHP 690

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
              F+AA ++ +       + +  +AR+  I +  P +NT  + +    N ++  L AI  
Sbjct: 691  SHFMAAVLSNQGGYYRS-QAYISEARRMGINVEGPDINTSRICYHAQGNTLFIGLMAIAN 749

Query: 845  VGTTT-ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS-RMQLL 902
            +   T  + + E      F  L+D  +R+D   L R    SLV +G  D  G   R    
Sbjct: 750  LKEQTRMQILAERRKGGLFFDLKDASTRLD---LCREDWVSLVESGCCDSLGRQYRRS-- 804

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFY 962
            + L  +   A+   +   +    +FA EK       +L +    ++      E   LGF 
Sbjct: 805  EQLRILLTNAERTTR---SDQLELFAPEKHIPGQTRSLVQVK--HTEDELHREFSALGFL 859

Query: 963  FSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM-VVSKQQKKTRKGSRIGWVTFS 1021
             S HPL ++   L+ +      E    + G  + L    +  KQ   T+ G  + +V+F 
Sbjct: 860  RSYHPLLLWSSYLQGLKRVRASELSQYV-GRYVNLIGYQITQKQV-MTKTGESMSFVSFE 917

Query: 1022 EPAKEYEANFFP 1033
            +    YE   FP
Sbjct: 918  DETALYETVLFP 929


>gi|300779433|ref|ZP_07089291.1| DNA-directed DNA polymerase III alpha subunit [Chryseobacterium gleum
            ATCC 35910]
 gi|300504943|gb|EFK36083.1| DNA-directed DNA polymerase III alpha subunit [Chryseobacterium gleum
            ATCC 35910]
          Length = 1014

 Score =  354 bits (907), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 247/1033 (23%), Positives = 444/1033 (42%), Gaps = 120/1033 (11%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  HS +SL  G LS+++++ +  A     + +TD N +    EF +K     I+PI+G 
Sbjct: 3    LNCHSFHSLRYGTLSIDDLISQALALGIKELVLTDINTVTGVYEFKKKCEENNIRPIVGV 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++              +         + +     G   + ++++            +I L
Sbjct: 63   EV--------------RNGSELYY--IAIAKEFSGLAEVNKMLT-------SYNCDKIDL 99

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL----YVNLQRH 189
                                           ++A   +L       D L    YV +   
Sbjct: 100  PL---------------------------QPELAYNFILYPLSNMPDNLQENEYVGI--- 129

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              Y+      +          +V      F ++++Y  H +L A+ ++T++S+     V 
Sbjct: 130  --YEDELNLLIRPEYNKLLSKMVILCPITFSTKKEYNLHRILRAIDNNTLLSKLAEKEVC 187

Query: 250  PDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                       +  I+   PE +ENT ++  +CSF      P   +       D  K   
Sbjct: 188  RKSEYFRSVDSIHRIYRHYPEIIENTQKLLSKCSFDFVFSTPRNRKHYTGTKADDLK--- 244

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              L   A AGLE          G + +   +R++ EL VI  + FSGYFLI  D I+++ 
Sbjct: 245  -LLTRLAYAGLER-------RYGRNHEVATKRIEKELKVIDELNFSGYFLITWDIIRYSN 296

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                    GRGSGA S+ AY L ITDI P+   L FERFLN +R S PDFDID+    RD
Sbjct: 297  SMGFM-HVGRGSGANSIVAYCLGITDICPIELDLYFERFLNLNRKSPPDFDIDWSWQERD 355

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
             ++ Y+ N+YG E VA   T    + ++ +R+VG+A  +P  ++D L K         + 
Sbjct: 356  IILDYIFNRYGKEYVAFCGTNVEFKYRSIIREVGKAFGLPKEELDELSKYPERVFRDDI- 414

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
                               V ++ +  + LE      S H+ GI+I + PL+    +   
Sbjct: 415  -------------------VKQVQKYGKLLEKFPNQRSMHSCGIIISEEPLTNFTALEMP 455

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG---VKVDLSLIPFDD 605
                 P+ Q++M   E+ G  KFD L  + L  +  ++  L ++    V +  + I  D+
Sbjct: 456  P-KGFPIVQWDMHVAEEIGFEKFDILSQRGLGTINDTVRLLEEKRGIKVNIKDTTISKDE 514

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--N 663
             +    L+   T+G F +ES  MR  L  ++ +  + ++A  S+ RPG   + +++    
Sbjct: 515  VKCNEYLSQGRTIGCFYIESPAMRGLLRRLKCNNYKVLVAASSIIRPGVAQSGMMHEYIF 574

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            R N  +K    HP+ +  L +T G+++YQE V++IA    G S ++ D+LRRAM  K + 
Sbjct: 575  RHNNPDKFEYFHPVFEKQLGDTYGIMVYQEDVIKIALHYGGVSAADGDILRRAMSGKGRS 634

Query: 724  EMDKQKER--FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
                QK +  F +   K G  + ++  I+  +  FA Y F K+H+A+YAV SYQ+ ++K 
Sbjct: 635  LSALQKVKDDFFASCRKQGHPEELSREIYRQIESFAGYSFCKAHSASYAVESYQSLYLKV 694

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
            +YP+EF+ +++   M    + + +  +AR     I+ P VN    +  +    IY  L  
Sbjct: 695  YYPLEFMVSAIN-NMGGFYRTEVYVHEARMSGGVILNPCVNKSEYETTIYGEEIYLGLML 753

Query: 842  IKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQ 900
            ++ V +  A+ I +    +  + S+EDF  RV    +    L++L+F GA    G  + +
Sbjct: 754  LEKVESKLAQLIPKERKANGEYRSMEDFIKRVP---IGIETLQTLIFIGAFRFSGVPKNE 810

Query: 901  LLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            LL     +    +  ++ +T     +F         +    +    N      +E  +L 
Sbjct: 811  LLLKARILLGDFKPEKRFQT-----LFEEP----IKEYKFPELKR-NVFEDAFDEIEILS 860

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            F  S  P D+ +   +  G    ++         +++ A ++S++   T++G+ + + T+
Sbjct: 861  FPVSCTPFDLLQT--KYRGTVMAKDLTE-HHKKQVKMLAYLISRKHVPTKRGT-MYFGTW 916

Query: 1021 SEPAKE-YEANFF 1032
             +     ++   F
Sbjct: 917  IDVQGNYFDTAHF 929


>gi|314927242|gb|EFS91073.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL044PA1]
 gi|328905983|gb|EGG25758.1| error-prone DNA polymerase [Propionibacterium sp. P08]
          Length = 739

 Score =  354 bits (907), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 190/720 (26%), Positives = 313/720 (43%), Gaps = 83/720 (11%)

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+   I    GRGS A S   YAL IT +DP+ + L FERFL+  R   PD D+DF 
Sbjct: 1    MEFARSRGIL-CQGRGSAAASAVCYALGITVVDPVFYGLPFERFLSVLREEEPDIDVDFD 59

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D   + +    
Sbjct: 60   ARRREEVIQYVYTKYGRRNAAQVADVITYRQRSAIRDMAKALGYSQGQQDAWSRQMEKRL 119

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              P    +                 D +  ++Q++ GL RH   H+AG+V+   P+ ++ 
Sbjct: 120  VSPSPQDS-----------DGPEIPDDVTGLAQQVVGLPRHLGIHSAGMVLTREPVGRIC 168

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+         V Q++ +     GL+KFD LGL  L+ L  S D +++       L+ IP
Sbjct: 169  PIEPARMRGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSFSFDLISRHCGRSWALASIP 228

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660
             ++   Y +L    ++G+FQ+ES      L  ++P C  D+   + L RPGP+    +  
Sbjct: 229  RNEPGVYDMLCRGDSIGVFQVESRAQIGTLPRLKPRCFYDLAVEIGLIRPGPVQGGAVHP 288

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   ++++AD+LRRAM  K
Sbjct: 289  YIRRRTGAELVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTVADADLLRRAMGSK 348

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            +  E +D  + +   G + +GI    A +I+  +  FA++GF +SHA ++A + Y +AW+
Sbjct: 349  RGMERIDSLRTKLFEGMAAHGIDDDTAQDIYARIESFANFGFAESHALSFAGLVYTSAWL 408

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD------------ 827
            K HYP  FLAA +  +            DAR+  +    P V    V             
Sbjct: 409  KLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADLELLDSCHEG 468

Query: 828  ------------------------FKVGDN----------RIYYSLAAIKGVGTTTARHI 853
                                    F    +           +   L+ + G+ T TA  I
Sbjct: 469  LGGEGLETGMDDCLHDHDESEIGAFDPNHDDGDHRRDTHFAVRLGLSDVSGISTETATRI 528

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
            +E      F SL+D   RVD   L+   +E+L  AGA D    SR   L  +  I   A 
Sbjct: 529  VEERERGFFTSLDDLARRVD---LSSEEVEALALAGAFDDLVGSRRGALWQIGQINGVAP 585

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
                 +      +                           ++ R  G     HP+   + 
Sbjct: 586  GQLDVQVATQPPL----------------LPELTQMELLGDDLRATGISTDDHPIRHMRD 629

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             L + G+   ++      G  I +A +V  +Q+  T  G  + ++   +          P
Sbjct: 630  ALNRRGVVRVDQLDGVESGRRIEVAGVVTHRQRPGTAGG--VTFLNLEDETGLLNVLVAP 687


>gi|313835830|gb|EFS73544.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL037PA2]
 gi|314970780|gb|EFT14878.1| DNA polymerase III, alpha subunit [Propionibacterium acnes HL037PA3]
          Length = 739

 Score =  354 bits (907), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 190/720 (26%), Positives = 313/720 (43%), Gaps = 83/720 (11%)

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
            +++A+   I    GRGS A S   YAL IT +DP+ + L FERFL+  R   PD D+DF 
Sbjct: 1    MEFARSRGIL-CQGRGSAAASAVCYALGITVVDPVFYGLPFERFLSVLREEEPDIDVDFD 59

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
              RR+EVI+YV  KYG    AQ+    + + ++A+RD+ +AL     Q D   + +    
Sbjct: 60   ARRREEVIQYVYTKYGRRNAAQVADVITYRQRSAIRDMAKALGYSQGQQDAWSRQMEKRL 119

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              P    +                 D +  ++Q++ GL RH   H+AG+V+   P+ ++ 
Sbjct: 120  VSPSPQDS-----------DGPEIPDDVTGLAQQVVGLPRHLGIHSAGMVLTREPVGRIC 168

Query: 544  PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIP 602
            P+         V Q++ +     GL+KFD LGL  L+ L  S D +++       L+ IP
Sbjct: 169  PIEPARMRGRTVLQWDKEDCAWMGLVKFDLLGLGMLSALSFSFDLISRHCGRSWALASIP 228

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVV 660
             ++   Y +L    ++G+FQ+ES      L  ++P C  D+   + L RPGP+    +  
Sbjct: 229  RNEPGVYDMLCRGDSIGVFQVESRAQIGTLPRLKPRCFYDLAVEIGLIRPGPVQGGAVHP 288

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GK 719
            Y  R+ G E +   HPL++P+L+ T G+ ++QEQ+MQ+A  +   ++++AD+LRRAM  K
Sbjct: 289  YIRRRTGAELVTYPHPLLEPVLERTLGIPLFQEQLMQMATTVGNCTVADADLLRRAMGSK 348

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            +  E +D  + +   G + +GI    A +I+  +  FA++GF +SHA ++A + Y +AW+
Sbjct: 349  RGMERIDSLRTKLFEGMAAHGIDDDTAQDIYARIESFANFGFAESHALSFAGLVYTSAWL 408

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD------------ 827
            K HYP  FLAA +  +            DAR+  +    P V    V             
Sbjct: 409  KLHYPAVFLAALLRSQPMGFYSSATLVADARRHGVVTRRPDVARSSVGADLELLDSCHEG 468

Query: 828  ------------------------FKVGDN----------RIYYSLAAIKGVGTTTARHI 853
                                    F    +           +   L+ + G+ T TA  I
Sbjct: 469  LGGEGLETGMDDCLHDHDESEIGAFDPNHDDGDHRRDTHFAVRLGLSDVSGISTETATRI 528

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
            +E      F SL+D   RVD   L+   +E+L  AGA D    SR   L  +  I   A 
Sbjct: 529  VEERERGFFTSLDDLARRVD---LSSEEVEALALAGAFDDLVGSRRGALWQIGQINGVAP 585

Query: 914  WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
                 +      +                           ++ R  G     HP+   + 
Sbjct: 586  GQLDVQVATQPPL----------------LPELTQMELLGDDLRATGISTDDHPIRHMRD 629

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             L + G+   ++      G  I +A +V  +Q+  T  G  + ++   +          P
Sbjct: 630  ALNRRGVVRVDQLDGVESGRRIEVAGVVTHRQRPGTAGG--VTFLNLEDETGLLNVLVAP 687


>gi|295132512|ref|YP_003583188.1| DNA polymerase III subunit alpha-2 [Zunongwangia profunda SM-A87]
 gi|294980527|gb|ADF50992.1| DNA polymerase III subunit alpha-2 [Zunongwangia profunda SM-A87]
          Length = 989

 Score =  353 bits (905), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 240/1037 (23%), Positives = 450/1037 (43%), Gaps = 119/1037 (11%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  HS +SL  G  S N +L    +++   +A+TD NN  + L F ++A    I+P++G 
Sbjct: 3    LNCHSYFSLRYGTFSENELLKLAESNKATYVALTDINNTSACLSFLKQAKNFSIKPLVGI 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE-LVSRMYLLDQGKQSVRIC 132
                            +         V++     G++ + + L S ++      ++  I 
Sbjct: 63   DF--------------RNGVEQQY--VVIAKNRNGFREMNQHLSSHLHAKMNFDKNAPIL 106

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
                     EG  ++                     K L T K  F +  ++ +      
Sbjct: 107  ---------EGCYIIYPFI-----------------KVLETNKTEFMENEFIGVS----- 135

Query: 193  DRYRESQVVQLA--YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVT 249
               R+   ++ +    +   LV   +  F S+ D+ AH +L A+ ++T++S+     +  
Sbjct: 136  --VRDLNKLKFSGYKNYTSKLVVLQSVSFRSKRDFNAHRLLRAIDNNTLLSKLAVEEQGN 193

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            P+  + ++ E+  +F + PE L NT  +A  C                    D  K +E 
Sbjct: 194  PEDKMLSKEEVNEVFKEFPEILSNTKALAEGCEVEFTFSKKQNNNLSS---IDEAKADEL 250

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            +LR      +E R  +         ++   RL+ EL  I ++ F  YFLI  + +Q+A+ 
Sbjct: 251  KLRKMCYDNIENRYPE-------ADEEVYARLNKELTAIIKLGFVSYFLINHEIVQYARS 303

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
             + PV  GRGSGA S+ AY + IT++DP+   L FERF+N +R S PDFDIDF    R++
Sbjct: 304  KDYPV-IGRGSGANSIVAYIIGITNVDPIELDLYFERFINENRSSPPDFDIDFSWRDRED 362

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            V R++ N++  + VA + T+ + + +A +R++G+   +P +++D+L        +     
Sbjct: 363  VTRFIFNRF--DHVALMGTYVTFKRRAVIRELGKVFGLPKAEIDKLSLGRFERSSLDKME 420

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
              + +                       + G   + S H+ GI+I +  +      +   
Sbjct: 421  LLVLNYGNL-------------------IAGFPNYLSVHSGGILILNDDIFNYGATFLPP 461

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP-----FD 604
            ++   +   +M   E+ G+ KFD L  + L+ +  +L+ + Q      +  I        
Sbjct: 462  KNFQTIQI-DMNIAEEVGIHKFDILAQRGLSKITDTLELIRQNQPDAFIEDIDNISKFKK 520

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662
            D    +LL     +G+F +ES  MR  L  +Q D   +++A  S+ RPG     +   Y 
Sbjct: 521  DPAINNLLKMGDCMGVFYVESPAMRGLLTKLQTDNYMNLVAASSIIRPGISSGGMKEEYI 580

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM--GKK 720
             R    ++    HP++  ++ +T G+++YQE VM++A   +G S  +ADVLRR M   K 
Sbjct: 581  KRHRDPKRRDQGHPVMLEIMGDTYGIMVYQEDVMKVAHHFAGLSFDDADVLRRGMSGKKT 640

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             K +M+K + +F S   +   ++ I   ++E ++ FA Y F K H+A+YAV SYQ+ ++K
Sbjct: 641  SKGQMEKIEAQFRSNCKERRYTQQITDEVWEQISSFAGYAFPKGHSASYAVESYQSLYLK 700

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             ++P+EF+ A +         ++ + Q+ ++    ++ P +N       +    IY    
Sbjct: 701  KYFPLEFMVAVLN-NGGGFYSVETYIQEIKKCGGNVLAPCINHSDHPNTILGKNIYLGFG 759

Query: 841  AIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             IK +   T + I+E       + SL+DF  RV+   ++   L  L+  GA    G  + 
Sbjct: 760  YIKELEAKTIQQILENRQFFGYYKSLDDFIDRVE---ISIEQLRILLKVGAFRFTGKDKH 816

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
            QLL        Y + ++  + +    +F         +  L +F        ++    +L
Sbjct: 817  QLLWE-----AYFRKIKSKKNSNQPGLF----KIQHKEYVLPEFQYSALIDAYDQ-IELL 866

Query: 960  GFYFSGHPLDVYKPILRK--MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            GF     PL  Y  +L+         +E    + G  + +   ++  ++  T  G  + +
Sbjct: 867  GF-----PLCNYFELLQDPVYDYTRVDELKNFV-GKKVSIYGKLICTKKTTTSGGKEMCF 920

Query: 1018 VTFSE-PAKEYEANFFP 1033
             TF +     ++   FP
Sbjct: 921  ATFYDIDYNIFDTVQFP 937


>gi|260060840|ref|YP_003193920.1| DNA polymerase III subunit alpha [Robiginitalea biformata HTCC2501]
 gi|88784970|gb|EAR16139.1| DNA polymerase III alpha subunit [Robiginitalea biformata HTCC2501]
          Length = 1028

 Score =  353 bits (905), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 247/1034 (23%), Positives = 433/1034 (41%), Gaps = 111/1034 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H+ YSL  G  S  ++L+    +    +A+TD NN  + L F ++A   G++P++G 
Sbjct: 3    LNCHTYYSLRYGTFSEVDLLELARENGVSCLALTDINNTSAGLNFVRRAPEFGVRPLLGI 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                                      V L     GY  L   +S  +L  +        L
Sbjct: 63   DF----------------RNGVESCFVGLAKNNRGYMELNAFLSD-HLHGKH------PL 99

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
                   ++ +++                        L      F    Y+ +   R   
Sbjct: 100  PERAPAFSDAVVI-----------------YPFERVLLAELGD-FAPHEYIGIS-VRDLR 140

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            R   S +V+        LV      F ++ D+ AH +L A+ ++ ++S+           
Sbjct: 141  RLPFSHLVERRDR----LVVLQPVTFRNKRDFNAHRLLRAIDNNALLSKLPESEQAHPED 196

Query: 254  LKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
                   +  +F++    LENT  +   CS                     ++E+E  L 
Sbjct: 197  CMYALPNLAEVFAEYAFILENTRALMEGCSIHFDFSEN-RQPQNLDTYTGSREEDEALLE 255

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                 G+                  R+RL  EL +I    F  YFLI  D +  A++   
Sbjct: 256  RLCEEGM-------PYRYSAPGPQIRKRLAKELELIRAKGFVSYFLINWDIVSEARRRGF 308

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                GRGSGA S+ AY L ITD+DP+   L FERF+N  R + PDFDIDF    R+ + R
Sbjct: 309  FY-VGRGSGANSIVAYLLRITDVDPIELDLYFERFINLFRTNPPDFDIDFSWRDREAITR 367

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            Y+ +++  + VA + T+ + + +  +R++G+   +P +++D+LC               +
Sbjct: 368  YIFDRF--QHVALLGTYVTFRERGIIRELGKVFGLPKAEIDQLCDGSYESS-------RL 418

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSD 552
               +R                  Q + G+  + S HA GI+I  +P+      +      
Sbjct: 419  DGVARLVLRYG------------QLIRGMPNYLSVHAGGILIAGKPIHWFSATHLPP-KG 465

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ------RGVKVDLSLIPFDDH 606
               TQF+M   E AGL KFD L  + L  ++++L+   Q      RGV +       +D 
Sbjct: 466  FATTQFDMVIAEDAGLYKFDILAQRGLAKIKEALEIARQNQPEATRGVDIHDIRKIKEDP 525

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNR 664
                L+ +   +G F +ES  MR  L+ ++ D    ++A  S+ RPG   + ++  Y  R
Sbjct: 526  AVNELIRSAQCMGCFYVESPAMRMLLKKLEVDNYLGLVAASSIIRPGVSKSGMMREYILR 585

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                E++   HP++  ++ +T GV++YQE V+++A   +G SL EADVLRR M  K +  
Sbjct: 586  HRDPERVKQAHPVLLDIMPDTYGVMVYQEDVIKVAHYFAGLSLGEADVLRRGMSGKFRSR 645

Query: 725  MDKQKER--FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             + ++ +  F++   + G ++++   I+E +A FA Y F K H+A+YAV SYQ+ +++ +
Sbjct: 646  EEFERVKAAFVANCRRKGYAESLISEIWEQVASFAGYAFAKGHSASYAVESYQSLFLRAY 705

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            +P+E+L A +        + + +  +AR    ++ PP +N   V  ++    IY  L  +
Sbjct: 706  FPLEYLVAVLN-NGGGFYRPECYVHEARMLGARVHPPCINRSGVANRIEGADIYLGLMYL 764

Query: 843  KGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            + +       I+        F  LEDF  RV    ++   L  LV   A    G  + +L
Sbjct: 765  RELEGRVMDRIVRQRQLGGAFSDLEDFLDRVP---ISIEQLSILVRIDAFRSTGAEKHRL 821

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
            L       K    + +     H  +F  ++  F    +L    +E +  +      +LGF
Sbjct: 822  LW------KAHLLLSRGGVADHPRLFPPQQTKFRI-PSLHGTELETAFTQM----ELLGF 870

Query: 962  YFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
                 P D+ +     + G + + E +    G  I +   +V+ +  KT  G R+ + TF
Sbjct: 871  CLCS-PFDLLEEPPANRNGCRHFPEYM----GRYIDIYGYLVTVKNTKTHNGKRMHFATF 925

Query: 1021 SEPAKEY-EANFFP 1033
             +   E  +   FP
Sbjct: 926  IDLYGEVFDTVLFP 939


>gi|291037375|ref|ZP_06568339.1| DNA polymerase III, alpha subunit [Gluconacetobacter xylinus NBRC
           3288]
          Length = 977

 Score =  349 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 186/678 (27%), Positives = 299/678 (44%), Gaps = 47/678 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  LQV + +S L GA S   + ++  A    A+ I D N+L   ++    A   GI+ +
Sbjct: 5   YAELQVTTYFSFLRGASSPIELFEQAKALGIEALGICDRNSLAGMVQAHVAAKETGIRLV 64

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +GC+LD+                     +++  +    Y RL  L++       GK    
Sbjct: 65  VGCRLDLAD----------------FAPVLVYPTDRAAYGRLCRLLTLGKAR-AGKGQCH 107

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-RH 189
           +    L   G   L++L   ++           +     +L   K  F DR Y+ L  R 
Sbjct: 108 LLWEDLVAWGDGLLVILLPDTA-----------NDACALQLRKLKDAFADRAYMALTLRR 156

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-V 248
           R  D+ R  ++  LA+   +P VATN+ LF + +     DV+  + + T + +    R  
Sbjct: 157 RPNDQMRLYELANLAHQARVPAVATNDVLFHTHDRRILQDVVTCIRNHTTIDEAGFARER 216

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             D YLK  +EM  +FS  PEA+  T++I  RC F L   A         E     +  +
Sbjct: 217 HADRYLKPPAEMARLFSRYPEAVARTMDIVERCRFSLDDLAY----QYPDEVSVPGQTPQ 272

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             L      G      +G         + R+ LD EL +I RM ++ YFL V   +++A+
Sbjct: 273 QALEALTWKGAAAAYPEG------IPPEVRKTLDHELALIGRMDYAPYFLTVHSIVRYAR 326

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             +I    GRGS A S   Y L IT IDP R SLLFERF++ +R   PD D+DF   RR+
Sbjct: 327 SQDIL-CQGRGSAANSAVCYVLGITAIDPARTSLLFERFVSEERREPPDIDVDFEHARRE 385

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
           ++I+++   YG    A        +AK ALRDVG+ + +P   + R            + 
Sbjct: 386 QIIQWIYGHYGRNHAALTAVVTRYRAKGALRDVGKVMGLPEDLI-RTLSGQIWGWGRKLD 444

Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             A+ +        ++D  +   L++++ L G+ RH S H  G V+    L +LVP+   
Sbjct: 445 EGALDET----GIDMSDRRIRLTLDLARCLIGVPRHLSQHPGGFVLTHDRLDELVPIEPA 500

Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG-VKVDLSLIPFDDHE 607
                 + +++   I+    +K D L L  LT ++K LD LA+    +  L  IP +D  
Sbjct: 501 AMDARQIIEWDKDDIDVLKFMKVDVLALGMLTCMKKGLDLLAEHKGQRYTLQTIPAEDPR 560

Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
           TY ++    T+G+FQ+ES      L  ++P    D++  V++ RPGPI      + R   
Sbjct: 561 TYAMIRKADTIGVFQIESRAQMSMLPRLRPRVFYDLVIEVAIVRPGPIQMGWTASMRHQC 620

Query: 668 KEKIVSIHPLIDPMLKET 685
                  H      +K T
Sbjct: 621 AMMRSEDHSEETARMKVT 638


>gi|304373272|ref|YP_003856481.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
 gi|304309463|gb|ADM21943.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
          Length = 979

 Score =  347 bits (890), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 291/1017 (28%), Positives = 479/1017 (47%), Gaps = 102/1017 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  ++ YS L+  + ++++++     Q   + ITD +N+F   +F  +  A  I PIIG 
Sbjct: 7    LHTNTEYSFLQSTIKISSLIEYARQHQLKHLVITDRDNMFGVAKFYNECKANNINPIIGL 66

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             L+I                      +L+    +G+  L  L S+       K+      
Sbjct: 67   DLEI-----------------KSFRFILIAKNYQGFLHLSLLSSK---KMSFKEI----- 101

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              ++E+  E +I++     G              +K L           +V        D
Sbjct: 102  -EIEELDNENIIVIDHPKLGL---------YSKTKKMLEF------SNYFV-----HSND 140

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                + V           V T N L+ SEE Y      +A +     +         D  
Sbjct: 141  SKIANSVY----------VQTRNVLYASEEKYLKILHKIADSAEKDEAVDF-----IDFE 185

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            +        I       +EN +      + IL                +     +  L+ 
Sbjct: 186  MWYEQVDEQIIQRTNSLVENILIEFPEANMILPDFKN-----------EANLNPDEFLQQ 234

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
                 +  + A+       +  ++++RL +E N+I  +KFS YFLI+ DF++WA+KNNI 
Sbjct: 235  LLEKQVAKKKAEF-----KNFPNFKERLVYEFNIIKSLKFSNYFLIIWDFLRWARKNNIL 289

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            +GPGRGS +GS+ +Y L IT ++PL+F L+FERFLNP R+SMPD DID   +RRDE+I+Y
Sbjct: 290  IGPGRGSSSGSLISYLLNITQVNPLKFDLIFERFLNPKRISMPDIDIDIQDNRRDELIQY 349

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            +Q KYG+E  A IITF +  AK A  DV + L+        +  +  + P      QA  
Sbjct: 350  IQQKYGYENTALIITFSTFGAKMAFADVAKKLKNV--SPTDVLAITKHIPFGLSLEQAYK 407

Query: 494  DDSRFREARLADPS-----VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             ++ FR       +        + EI++ LEG+ R + THAAGIVI D+PL   VP    
Sbjct: 408  TNANFRAYVEKQDNNGNFLYKEIFEIAKFLEGMPRQSGTHAAGIVIADKPLYNYVPT-LI 466

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHE 607
             +     TQF+ +++E+  L+K D LGLK LT+++  ++ + Q      + + IP  D  
Sbjct: 467  SKDKYNQTQFSAEFLEQFSLLKIDLLGLKNLTVVKGIINSINQHSNLNFNFNSIPIFDKG 526

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  LLT   T+GIFQLES GM   L  +    I+D++A++SL+RPGPI NI +Y  RK  
Sbjct: 527  TNELLTRGKTVGIFQLESPGMANTLRKVGISSIDDVVAVISLFRPGPIKNIPLYAQRKKN 586

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +     I    + +LK T G+IIYQEQ+MQI Q ++G+  + +D++RRA+ KK  +++ K
Sbjct: 587  EADYEIISQEYNDILKSTYGIIIYQEQIMQICQTIAGFDFATSDLIRRAISKKEAKKLYK 646

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             K+ FI G    G S  +   IF+ +  FA+YGFNKSHA AYA ++Y+ A++K +YP+EF
Sbjct: 647  AKQLFIQGGLNKGYSAVVLEKIFQQIEYFAEYGFNKSHAVAYATLAYKMAYLKQNYPLEF 706

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMP-PSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
             +  +T E  +   I KF ++A+       P  +++T  V ++   + IY  L  IKG+G
Sbjct: 707  YSFLITNEEGSQTNIAKFIKEAQPAIKFKKPNINISTTSVVYERKTSTIYLPLILIKGLG 766

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            +   + I+E    +  +    DF  R+    ++  ++  L+ +G L  FG +   LL++L
Sbjct: 767  SVACQKILEERNKNGLYKDFLDFVIRMKIINISNTIITLLINSGTLSEFG-NIPTLLENL 825

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
               + Y   + ++        ++   G F  +I       +N  +  ENE+++LG  FS 
Sbjct: 826  VTAESYKICILEDENKNLYCDYSLIPGKFELEIK-----EDNLELTIENEEKLLGMSFSS 880

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
                 +   +         E    +    +     V        + G+ +  +T ++
Sbjct: 881  -----FDQNIDLKNPVLLSELSLNVEYRMVL---YVKKVANLTAKTGASMKKITLTD 929


>gi|284931595|gb|ADC31533.1| DNA polymerase III alpha subunit [Mycoplasma gallisepticum str. F]
          Length = 1023

 Score =  347 bits (889), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 261/976 (26%), Positives = 421/976 (43%), Gaps = 115/976 (11%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV+L   S YSLL   LS++ I+D    + Q  + +TD N L+ A+EF   A    + PI
Sbjct: 2   FVNLNTRSYYSLLSTNLSISEIIDFAVKNNQTHVCLTDLNVLYGAVEFYNLAKKNHLIPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG ++                   T   +VL+     GY  LI++ S             
Sbjct: 62  IGLEI---------------FDHSTNSELVLIAKNNSGYLNLIKISSFASSNLDF----- 101

Query: 131 ICLSWLQEIGTEGLIML--TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                L +   E L ++  +G                  ++    F        Y     
Sbjct: 102 ----DLFKYLDENLFVIVKSGDFKWDHVNCLKK------KELAFNFV-----NCY----- 141

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                         L     L ++  N                           +     
Sbjct: 142 -------------DLEKKVGLNVI--NAVSM--------------KQAGKRSKFQIDELY 172

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                L +               +                  +    I K     + + +
Sbjct: 173 NSQLVLASPFLSTEKAKKQFSQKQLDKLNDLVQQCSGWDLDNLTKNSIIKYHTPKEFDSD 232

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             L                + K       ++RL++EL +I ++ FS YFL V DFI  AK
Sbjct: 233 QYLVELCQTRF-----NDLLNKRLIRASDQKRLNYELAIIKKLNFSDYFLFVYDFINHAK 287

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
           +  I +GPGRGS AGS  +Y L IT I+P+ + L+FERFLNP R SMPD D+D    RR+
Sbjct: 288 QQGIVIGPGRGSAAGSFISYLLNITTINPISYGLIFERFLNPQRKSMPDIDVDIMDSRRE 347

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
           EV+ Y+ NKY  + VA IITF  ++ K A+RDV R L +  S+ D +   +  D      
Sbjct: 348 EVVDYLFNKYSKDNVAHIITFQRIKVKNAIRDVCRVLDLKTSETDEVINFVSYDEISDWE 407

Query: 489 L---------------QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
                             +      R   ++   + ++ +++Q +  + R    HAAG+V
Sbjct: 408 KNQNATALKKVLNCNECDLDQKKCKRSGAVSCYVISKIFDLAQTIFNVPRQTGLHAAGVV 467

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QR 592
            G+  L+Q +P+     ++  V+QF+M+++E+ GL+K D LGLKTLT++ +    +    
Sbjct: 468 CGNDALTQTIPLQY--LNNRSVSQFSMEYLEQFGLMKIDLLGLKTLTIIDEINSLVKLNY 525

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               D++ IP ++  T++LL    T G+FQLES GM+  L+ + P+ IEDI  + +LYRP
Sbjct: 526 DRDFDINNIPLNNKNTFNLLKKGYTKGVFQLESLGMQNVLKKVLPESIEDISIISALYRP 585

Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           GP DNI  Y  R+    +   +   +  +LK T G+IIYQEQV+  A +++ +  ++AD 
Sbjct: 586 GPQDNIDEYVKRRFSNTEFNYLSEDLIEILKPTHGIIIYQEQVINTAMVVANFDAAQADS 645

Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            RRA+ KK +  + K K+ FI  A KN  S+  A+ IFE L KFADYGFN SH+ +YA +
Sbjct: 646 FRRAISKKDEALLLKDKKAFIEQAIKNRYSEQKALEIFEYLHKFADYGFNHSHSLSYAFL 705

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF--KV 830
           +YQ A++K +YP EF    +   +D+  K+  +  +  + NI I+ P++N     F    
Sbjct: 706 AYQMAYLKANYPKEFYLILLKNNVDSKVKLTDYFIEIIERNIGIIKPNINLSDWSFSLSA 765

Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
              +I      I G+G   A  I++A  +K F+   D    +    + + + + LV  G 
Sbjct: 766 DHQKIILGFNMINGLGNENANKIVQARNNKQFEGFIDCLINLAKNGITKSLFDKLVNVGV 825

Query: 891 LDCF--GYSRMQL-------------LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
            D F    S+  +              ++ D++  Y    E+ +     ++F   K    
Sbjct: 826 FDQFKLELSKKAMSALVKSYFDQNVGFKNDDDLISY----EEKKALVQSSLFFLTKEQPE 881

Query: 936 DKITLEKFSVENSSVR 951
             + L K  +   +  
Sbjct: 882 LFLNLSKDELIAENEL 897


>gi|330723855|gb|AEC46225.1| DNA polymerase III DnaE [Mycoplasma hyorhinis MCLD]
          Length = 979

 Score =  346 bits (888), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 291/1017 (28%), Positives = 479/1017 (47%), Gaps = 102/1017 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  ++ YS L+  + ++++++     Q   + ITD +N+F   +F  +  A  I PIIG 
Sbjct: 7    LHTNTEYSFLQSTIKISSLIEYAKQHQLKHLVITDRDNIFGVAKFYNECKANNINPIIGL 66

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             L+I                      +L+    +G+  L  L S+       K+      
Sbjct: 67   DLEI-----------------KSFRFILIAKNYQGFLHLSLLSSK---KMSFKEI----- 101

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              ++E+  E +I++     G              +K L           +V        D
Sbjct: 102  -EIEELDNENIIVIDHPKLGL---------YSKTKKMLEF------SNYFV-----HSND 140

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                + V           V T N L+ SEE Y      +A +     +         D  
Sbjct: 141  SKIANSVY----------VQTRNVLYASEEKYLKILHKIADSSEKDEAVDF-----IDFE 185

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            +        I       +EN +      + IL                +     +  L+ 
Sbjct: 186  MWYEQVDEQIIQRTNFLVENILIEFPEANMILPDFKN-----------EANLNPDEFLQQ 234

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
                 +  + A+       +  ++++RL +E N+I  +KFS YFLI+ DF++WA+KNNI 
Sbjct: 235  LLEKQVAKKKAEF-----KNFPNFKERLVYEFNIIKSLKFSNYFLIIWDFLRWARKNNIL 289

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
            +GPGRGS +GS+ +Y L IT ++PL+F L+FERFLNP R+SMPD DID   +RRDE+I+Y
Sbjct: 290  IGPGRGSSSGSLISYLLNITQVNPLKFDLIFERFLNPKRISMPDIDIDIQDNRRDELIQY 349

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            +Q KYG+E  A IITF +  AK A  DV + L+        +  +  + P      QA  
Sbjct: 350  IQQKYGYENTALIITFSTFGAKMAFADVAKKLKNV--SPTDVLAITKHIPFGLSLEQAYK 407

Query: 494  DDSRFREARLADPS-----VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             ++ FR       +        + EI++ LEG+ R + THAAGIVI D+PL   VP    
Sbjct: 408  TNANFRAYVEKQDNNGNFLYKEIFEIAKFLEGMPRQSGTHAAGIVIADKPLYNYVPT-LI 466

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-KVDLSLIPFDDHE 607
             +     TQF+ +++E+  L+K D LGLK LT+++  ++ + Q      + + IP  D  
Sbjct: 467  SKDKYNQTQFSAEFLEQFSLLKIDLLGLKNLTVVKGIINSINQHSNLNFNFNSIPIFDKG 526

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
            T  LLT   T+GIFQLES GM   L  +    I+D++A++SL+RPGPI NI +Y  RK  
Sbjct: 527  TNELLTRGKTVGIFQLESPGMANTLRKVGISSIDDVVAVISLFRPGPIKNIPLYAQRKKN 586

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +     I    + +LK T G+IIYQEQ+MQI Q ++G+  + +D++RRA+ KK  +++ K
Sbjct: 587  EADYEIISQEYNDILKSTYGIIIYQEQIMQICQTIAGFDFATSDLIRRAISKKEAKKLYK 646

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             K+ FI G    G S  +   IF+ +  FA+YGFNKSHA AYA ++Y+ A++K +YP+EF
Sbjct: 647  AKQLFIQGGLNKGYSAVVLEKIFQQIEYFAEYGFNKSHAVAYATLAYKMAYLKQNYPLEF 706

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMP-PSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
             +  +T E  +   I KF ++A+       P  +++T  V ++   + IY  L  IKG+G
Sbjct: 707  YSFLITNEEGSQTNIAKFIKEAQPAIKFKKPNINISTTSVVYERKTSTIYLPLILIKGLG 766

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
            +   + I+E    +  +    DF  R+    ++  ++  L+ +G L  FG +   LL++L
Sbjct: 767  SVACQKILEERNKNGLYKDFLDFVIRMKIINISNTIITLLINSGTLSEFG-NIPTLLENL 825

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
               + Y   + ++        ++   G F  +I       +N  +  ENE+++LG  FS 
Sbjct: 826  VTAESYKICILEDENKNLYCDYSLIPGKFELEIK-----EDNLELTIENEEKLLGMSFSS 880

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
                 +   +         E    +    +     V        + G+ +  +T ++
Sbjct: 881  -----FDQNIDLKNPVLLSELSLNVEYRMVL---YVKKVANLTAKTGAWMKKITLTD 929


>gi|26553651|ref|NP_757585.1| DNA polymerase III DnaE [Mycoplasma penetrans HF-2]
 gi|26453657|dbj|BAC43989.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
          Length = 990

 Score =  346 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 274/1010 (27%), Positives = 463/1010 (45%), Gaps = 116/1010 (11%)

Query: 30   NNILDKIA--ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTN 87
            + I++       +   + +TDT NL+  +EF  K     + P+IG  ++           
Sbjct: 32   DQIIEFAINEEKKY--VCLTDT-NLYGVIEFYLKCKDKNLMPVIGLSIN----------- 77

Query: 88   QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIML 147
              +    T    VL     +GY  L+++ S +   +             +   ++  I+ 
Sbjct: 78   -SQLIENTKYDFVLFAKNKKGYLNLVKISSFLMTNNDFNY---------ENYLSDLFIV- 126

Query: 148  TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTH 207
                                                    ++  +D   +S+V  +    
Sbjct: 127  ---------------------------------------DKNGTFDFKTDSKVYSI-NPK 146

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
            +   +A N + + ++ D    + L A+ ++  VS  +         L     +       
Sbjct: 147  DKNAIAFNEARYFNKNDKRVFNALQAIKNNRTVSIDELEEGQDLSLLTESESVSLFN--- 203

Query: 268  PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
                +  +E        + +        I K  ++    ++  L    + GL  ++    
Sbjct: 204  ----DVQIENLNNEIKEVNLEIEFEKNNIIKYPNESNLSDKALLHKFCMDGLNEKIFNKE 259

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
            I        Y +R+++EL +I  M F+ YFL+V DFI  AK   I +GPGRGS AGS+ A
Sbjct: 260  IDSNSK-DTYIERMEYELQIIDDMGFNDYFLVVQDFINDAKNKGILIGPGRGSAAGSLIA 318

Query: 388  YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
            Y L IT+ID ++++LLFERFLNP R++MPD DID    RRDEV+ Y+  KYG++ VA II
Sbjct: 319  YLLGITEIDSIKYNLLFERFLNPGRITMPDIDIDIMDIRRDEVVEYLFEKYGYDHVAHII 378

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            TF  ++AK ALRD+GR L +    ++ +CK I  D       + +A+    ++ + A  S
Sbjct: 379  TFQKIKAKMALRDIGRILNIDLKIINSICKSITKDL-----EEDLANAINTKKLQDAYKS 433

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
               L +++  + G  R    HAAG+V+  + L+ +VP+     +    TQ++M ++E  G
Sbjct: 434  YKDLFDLAIGIMGCPRQVGIHAAGVVLSQKVLTDIVPIQT-SVNGEITTQYSMDYLEDLG 492

Query: 568  LIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            LIK D LGL  L+ +      +    G++++L+ +  +D   +  L    TLGIFQLES 
Sbjct: 493  LIKMDLLGLTNLSTINHVCKLIKMNHGIEINLAKLNLEDQNVFLDLQQGHTLGIFQLESE 552

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
            GM   ++ ++P CIEDI    +L+RPGP+ NI  +  R+ G EK+  I      +L+ T 
Sbjct: 553  GMTSVVKQVKPVCIEDISICSALFRPGPMQNIKPFVRRREGFEKVEYIDVKNKDILEPTH 612

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G+I+YQEQV+ + + ++ +SLSEAD+ RR + KK   E+D  K+ F   A KN  ++   
Sbjct: 613  GIIVYQEQVINLVRRIANFSLSEADMFRRIISKKKGHELDNFKKMFFENALKNDYTQDRL 672

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              I+  +  FADYGFN SH+ AY++I Y  A++K +YP+EF+   MT   ++  KI  + 
Sbjct: 673  EQIYNYIYTFADYGFNHSHSVAYSLIGYWMAYLKHYYPIEFMIILMTFSENDKNKIDLYV 732

Query: 807  QDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             + ++ NI I  P +N     F +   N I + L +IKG+G  T++ I+E   +      
Sbjct: 733  NECKRLNINIRKPDINISNKSFGLYKKNTILFGLNSIKGIGVETSKKIIEIRTNNKDKKF 792

Query: 866  EDFC---SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             DFC    ++ S K+    LE+L+ AG  D F  S+  +L++L  I   A  ++      
Sbjct: 793  SDFCEAIKKLSSNKVGISTLETLINAGTFDGFKLSKKYMLENLPIIVDAASNLK------ 846

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFEN---EQRVLGFYF-------SGHPLDVYK 972
                   + G+F  +  L     E ++ +      E  +LG          S       K
Sbjct: 847  -------DDGSFLFEPRLIDVEGETNAEKEAFNKKEIELLGLDLNEDNNNFSD------K 893

Query: 973  PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
              L        +     I     +    + S + KKT+K + +  +   +
Sbjct: 894  NEL-LYKYPDIKPITEPITNGTFKSIVFIKSYEIKKTKKNTDMLSLMLVD 942


>gi|309807964|ref|ZP_07701892.1| DNA polymerase III, alpha subunit [Lactobacillus iners LactinV
            01V1-a]
 gi|308168815|gb|EFO70905.1| DNA polymerase III, alpha subunit [Lactobacillus iners LactinV
            01V1-a]
          Length = 705

 Score =  346 bits (886), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 246/677 (36%), Positives = 372/677 (54%), Gaps = 18/677 (2%)

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD 417
            +IV D I +     I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD
Sbjct: 1    MIVWDVINYCHSIGILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPD 60

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D+D   +RR+EV+ Y+ +KYG + VAQI++F +  AK  L DVG A       ++   K
Sbjct: 61   IDLDIPDNRRNEVVLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQK 120

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
             IP   +      A      FR    A  S     E+++K+EGL RH S HAAG+VI D 
Sbjct: 121  AIPKSKSKITLSDAYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDM 180

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             +++ V +       +PVTQ   K++E  GL+K DFLGL  LT+L  + + +   G+K+D
Sbjct: 181  SIAKTVGLQNGSL-GIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNAFNEVKMSGIKLD 239

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP DD  T  L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI N
Sbjct: 240  MDKIPLDDPATIKLFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKN 299

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            I  Y  RKN +EK+V   P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+
Sbjct: 300  IDSYIRRKNKEEKVVYPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAI 359

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
              K   EM K    F++ A + G S + A +IFE + KF++YGFNKSH+ AY+ +SY  A
Sbjct: 360  SSKDSMEMKKIGVDFVNRAVQQGHSASAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLA 419

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIY 836
            ++K HYP +F  A +   + + +K+ K+  D +  NI+I  P +N    +F + D   I 
Sbjct: 420  YLKVHYPKQFYVALLNSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIV 479

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L +I G+       IM     +P  SL DF  ++D+K L+  ++ +L+ +GA D    
Sbjct: 480  TGLDSIIGLRMDFVEQIMNL--QRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHK 537

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R  LL S +++    +      +  +  +F   +    D        + +++ + E E 
Sbjct: 538  NRSALLASYEDLLICIK-----MSGGNNVLFQALEPKELD------IKMPSNAQKEEWET 586

Query: 957  RVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             VLGF     P+   +   +K G K + +      G ++     ++  +   T+   ++ 
Sbjct: 587  SVLGFSPQIDPILAAQIYAKKYGFKPFSDFTFYDEGVSV---GKMMDIKVITTKNNKKMA 643

Query: 1017 WVTFSEPAKEYEANFFP 1033
            +  F++  +  +   FP
Sbjct: 644  FAKFNDLHETVDFVIFP 660


>gi|212695655|ref|ZP_03303783.1| hypothetical protein ANHYDRO_00172 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677328|gb|EEB36935.1| hypothetical protein ANHYDRO_00172 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 405

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 129/421 (30%), Positives = 217/421 (51%), Gaps = 21/421 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +  +  F HL +H+ YSLL+G   ++ +++K+   +  + AITD  N++  +EF +K   
Sbjct: 1   MTNN--FTHLHLHTEYSLLDGFTKIDKLMEKLKEYKMNSCAITDHGNMYGVIEFYKKCQD 58

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            GI+PIIGC++ +   D+     Q K        ++LL    +GYQ LI++VS+ Y  + 
Sbjct: 59  NGIKPIIGCEVYVSENDHKIKNPQNK----RYYHLILLAKNNKGYQNLIKIVSKAYT-EG 113

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                RI    L+E   + +I L+   +G I++    N  + A +    +  LFG +  Y
Sbjct: 114 FYYKPRIDFEVLEEY-KDDIIALSACLNGEINQRILENDIEKAYQTAQKYLDLFGRENFY 172

Query: 184 VNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           + +Q H   ++      ++++    ++ +V TN+  ++ + D    DVL  +   + +  
Sbjct: 173 LEIQNHGLKEQKIVNQNLLKIHEDLKIEMVCTNDVHYVEKNDSFYQDVLSCIQTGSFLED 232

Query: 243 KDRPRVTPD-HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
           + R ++  D  YLK++  M  IF D P A EN+ +IA  C+  L+ H P LP F +    
Sbjct: 233 EKRMKMPCDEFYLKDQQMMSEIFKDFPRAYENSQKIADMCNVKLEFHNPHLPYFTK---V 289

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                  + L+     GL           G   +  ++R + E++VI  M +  YFLIV 
Sbjct: 290 PENMTNLDYLKYLVNKGLAK-------KYGKVDEKIQKRAEKEISVINNMGYVDYFLIVW 342

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           DF+++AK N I VGPGRGS AGS+ +YAL IT IDP++++LLFERF  P +     +   
Sbjct: 343 DFVRYAKDNKIAVGPGRGSAAGSIISYALDITQIDPIKYNLLFERFFKPRKSVHARYRYR 402

Query: 422 F 422
           F
Sbjct: 403 F 403


>gi|213582269|ref|ZP_03364095.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. E98-0664]
          Length = 562

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 174/433 (40%), Positives = 248/433 (57%), Gaps = 11/433 (2%)

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YNN 663
            +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V       +  
Sbjct: 1    MLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGR 60

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  E
Sbjct: 61   EELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPE 120

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            EM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HY
Sbjct: 121  EMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHY 180

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAI 842
            P EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D   I Y + AI
Sbjct: 181  PAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAI 240

Query: 843  KGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KGVG      I++A      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L
Sbjct: 241  KGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 300

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            + SL +  K A    K       ++F    +     + +          V  + E+  LG
Sbjct: 301  MNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLG 360

Query: 961  FYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y +GHP++ Y   + +  G    ++   T RG     A +V++ +   T++G+RIG  T
Sbjct: 361  LYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICT 420

Query: 1020 FSEPAKEYEANFF 1032
              + +   E   F
Sbjct: 421  LDDRSGRLEVMLF 433


>gi|31544436|ref|NP_853014.1| DNA polymerase III subunit alpha [Mycoplasma gallisepticum str.
           R(low)]
 gi|31541281|gb|AAP56582.1| DNA polymerase III alpha subunit [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930492|gb|ADC30431.1| DNA polymerase III alpha subunit [Mycoplasma gallisepticum str.
           R(high)]
          Length = 1023

 Score =  344 bits (882), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 255/905 (28%), Positives = 409/905 (45%), Gaps = 98/905 (10%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV+L   S YSLL   LS++ I+D    + Q  + +TD N L+ A+EF   A    + PI
Sbjct: 2   FVNLNTRSYYSLLSTNLSVSEIIDFAVKNNQTHVCLTDLNVLYGAVEFYNLAKKNHLIPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG ++                   T   +VL+     GY  LI++ S      +      
Sbjct: 62  IGLEI---------------FDHSTNSELVLIAKNNSGYLNLIKISSFASSNLEF----- 101

Query: 131 ICLSWLQEIGTEGLIML--TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                L +   E L ++  +G                  ++    F        Y     
Sbjct: 102 ----DLFKYLDENLFVIVKSGDFKWDHVNCLKK------KELAFNFV-----NCY----- 141

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                         L     L ++              A  +  A   S     +     
Sbjct: 142 -------------DLEKKVGLNVI-------------NAVSMKQAGKRSKFQIDELYNSQ 175

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ-VHAPILPRFIEKECDDIQKEE 307
                    +E         +       + +   + L  +    + ++   +  D     
Sbjct: 176 LVLASPFLSTEKAKKQFSQKQLDRLNDLVQQCSGWDLDNLTKNSIIKYHTPKGFDG---- 231

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
           +  L                + K       ++RL++EL +I ++ FS YFL V DFI  A
Sbjct: 232 DQYLVELCQTRF-----NDLLNKRLIRASDQKRLNYELAIIKKLNFSDYFLFVYDFINHA 286

Query: 368 KKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
           K+  I +GPGRGS AGS  +Y L IT I+P+ + L+FERFLNP R SMPD D+D    RR
Sbjct: 287 KQQGIVIGPGRGSAAGSFISYLLNITTINPISYGLIFERFLNPQRKSMPDIDVDIMDSRR 346

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
           +EV+ Y+ NKY  + VA IITF  ++ K A+RDV R L +  S+ D +   +  D     
Sbjct: 347 EEVVDYLFNKYSKDNVAHIITFQRIKVKNAIRDVCRVLDLKTSETDEVINFVSYDEISDW 406

Query: 488 SL---------------QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
                              +      R   ++   + ++ +++Q +  + R    HAAG+
Sbjct: 407 EKNQNATALKKVLNCNECDLDQKKCKRSGAVSCYVISKIFDLAQTIFNVPRQTGLHAAGV 466

Query: 533 VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-Q 591
           V G+  L+Q +P+     ++  V+QF+M+++E+ GL+K D LGLKTLT++ +    +   
Sbjct: 467 VCGNDALTQTIPLQY--LNNRSVSQFSMEYLEQFGLMKIDLLGLKTLTIIDEINSLVKLN 524

Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                D++ IP ++  T++LL    T G+FQLES GM+  L+ + P+ IEDI  + +LYR
Sbjct: 525 YDRDFDINNIPLNNKNTFNLLKKGYTKGVFQLESLGMQNVLKKVLPESIEDISIISALYR 584

Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
           PGP DNI  Y  R+    +   +   +  +LK T G+IIYQEQV+  A +++ +  ++AD
Sbjct: 585 PGPQDNIDEYVKRRFSNTEFNYLSEDLIEILKPTHGIIIYQEQVINTAMVVANFDAAQAD 644

Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             RRA+ KK +  + K K+ FI  A KN  S+  A+ IFE L KFADYGFN SH+ +YA 
Sbjct: 645 SFRRAISKKDEALLLKDKKAFIEQAIKNRYSEQKALEIFEYLHKFADYGFNHSHSLSYAF 704

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF--K 829
           ++YQ A++K +YP EF    +   +D+  K+  +  +  + NI I+ P++N     F   
Sbjct: 705 LAYQMAYLKANYPKEFYLILLKNNVDSKVKLTDYFIEIIERNIGIIKPNINLSDWSFSLS 764

Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
               +I      I G+G   A  I++A  +K F+   D    +    + + + + LV  G
Sbjct: 765 ADHQKIILGFNMINGLGNENANKIVQARNNKQFEGFIDCLINLAKNGITKSLFDKLVNVG 824

Query: 890 ALDCF 894
             D F
Sbjct: 825 VFDQF 829


>gi|291320098|ref|YP_003515356.1| DNA polymerase III subunit alpha [Mycoplasma agalactiae]
 gi|290752427|emb|CBH40398.1| DNA polymerase III, alpha subunit [Mycoplasma agalactiae]
          Length = 977

 Score =  344 bits (882), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 277/1032 (26%), Positives = 465/1032 (45%), Gaps = 106/1032 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+ L   + YS LE  + + +++     + + A+ ++D NN+F+  EF ++  A  I+PI
Sbjct: 4    FIDLYNTTEYSFLESLIKVKDLVRLSKENGKRAVVLSDHNNMFALGEFLKQCAAYEIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  LD++                     +LL    EG++                    
Sbjct: 64   IGVDLDVEE-----------------SRFILLAKNYEGFK-------------------- 86

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                                    I+      S +           +  D L++    H 
Sbjct: 87   -----------------------LINSLILKKSREEI-----RLNDIISDNLFI--IDHP 116

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                Y +++  +L+              +       +    + V  + ++  +D   +  
Sbjct: 117  SNGLYAKNEHHKLSDNKN----------YYISSPDSSIPNSIYVKENKLIDVEDNETLNI 166

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
               L N  E    FS   +   ++ +   R +FI+       P+   K     + EE+N 
Sbjct: 167  LLKLGNNKEANYNFSYFEDYTTDS-DFLARINFIVDNCNVTFPKKELKLASFCESEEKNY 225

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                 +  ++  LA+   A   +      R+++E +VI ++ F  YFLI++D I++A  N
Sbjct: 226  --ELFIEKIKQGLAKHKKALLPYKTAVNDRINYECSVIKKLGFINYFLIISDMIEYADNN 283

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I +GPGRGS AGS+ +Y L IT I+PL+++LLFERFLN D++S PD DID   DRRDE+
Sbjct: 284  GISIGPGRGSAAGSLISYLLGITKINPLKYNLLFERFLNIDKVSWPDIDIDIQDDRRDEI 343

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
              Y+QNKYG  RVA I TF ++  K A+RDVGR L +P S V+R+ K I     +    +
Sbjct: 344  FAYLQNKYGKSRVAVISTFQTMGTKQAIRDVGRMLDIPLSDVNRISKSINAFANYSSIEE 403

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
              A +  F +   +    ++ +    KL+GL R    HAAG++I D+ L++ VP++ +  
Sbjct: 404  EFAKNLTFNKEVSSLKDYEKFINHVSKLQGLPRQYGIHAAGLIISDKDLNEYVPVFENAY 463

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP---FDDHE 607
            S L V    M+++E  GL+K D LGLKTLT ++     +++  +   L         D  
Sbjct: 464  SFLQVQV-PMEFVEDFGLLKIDLLGLKTLTEIKHIEKRISKLKLFDQLVYENDLELQDPM 522

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
              +LL    T G+FQ+ESSGM+  ++ +     ED+ A++SLYRPGP + I  Y N +  
Sbjct: 523  AINLLNNGNTEGLFQIESSGMKSTIKRVGIQSFEDLFAIISLYRPGPKEYIKDYANNRKN 582

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             + I  I P+ D ++  T G+IIYQEQ+M+IAQ ++  S ++AD+LRRA+ KK + E+ K
Sbjct: 583  PKLIEKIDPVYDEIVAPTYGIIIYQEQIMEIAQAVAKMSFAQADLLRRAISKKNEVELHK 642

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +  F  G  +N  S      I++ + KFA YGFNKSHA +YA ++ + A+ K  YP  +
Sbjct: 643  YRNTFFEGGLRNNFSIESLTKIYDKIEKFAQYGFNKSHAVSYAYLTMKMAYYKARYPQVY 702

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
             +A ++    +  KI  F  + +  N  +  PS+        V +  IY     IKG+G 
Sbjct: 703  FSALISNSYGDQNKIASFVNELKNMNFSVYSPSIIHFTNSAIVDNGDIYLPFNMIKGLGA 762

Query: 848  TTARHI-MEASADKPFD--SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
             + + I ++   +  +   SL +   R+    +   ++ +L+ A     FGY     +  
Sbjct: 763  ESIKKIALDIKENGQYKDLSLFEILLRLRFAGIKNSMISTLIRANVFRNFGY--QDYISG 820

Query: 905  LDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQRVLG-F 961
            +D + +    +     N   +I      +G       +E  S  N      NE  +LG  
Sbjct: 821  VDLLMQEEYNLLSKGANSFADIAKNLDFEGYKKASENIEMQSKFNLEEESRNEIELLGNI 880

Query: 962  YFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y      + YK     K       + +      +   A  +V K++ K +       +  
Sbjct: 881  Y------NAYKTVQYEKKYKYRLSDLLKMQ--GSFSTAIEIVVKKEPKDK---PYAIIEV 929

Query: 1021 SEPAKEYEANFF 1032
             +        FF
Sbjct: 930  CDRT--LNYTFF 939


>gi|194246498|ref|YP_002004137.1| DNA polymerase III, alpha subunit [Candidatus Phytoplasma mali]
 gi|193806855|emb|CAP18284.1| DNA polymerase III, alpha subunit [Candidatus Phytoplasma mali]
          Length = 920

 Score =  344 bits (881), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 253/981 (25%), Positives = 437/981 (44%), Gaps = 102/981 (10%)

Query: 16  VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75
             S Y+LL+   SL +I+     +    ++++D  NL+  +EF +      I+P+IG ++
Sbjct: 7   CQSYYNLLKSLNSLEDIVKTAIKNNYDFVSLSDDENLYGMIEFLELCYKYKIKPVIGIKI 66

Query: 76  DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            +++    + +   K        I++      G   LI+L + +   ++      + L  
Sbjct: 67  KLNLNKKNEFSKNNKKIE-----ILVYAKNDIGINNLIKLSNIIKAENKE-----VYLQD 116

Query: 136 LQEIGTEGLIMLTGGSSGPIDRAFFF-------NSSQVAEKRLLTFKKLFGDRLYVNLQR 188
           LQE+  EG+ ++                      + ++ E  LL FK+      Y+ +  
Sbjct: 117 LQEL-QEGIFVIISILDKFFFEKVNNYFLSPTDANKEIIETILLNFKEKIK-NFYIGISL 174

Query: 189 ----------HRGYD--------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
                     +   D           E  +   A   ++ ++ T+ + +L ++D   ++ 
Sbjct: 175 QANINVDMIEYGINDLSIISPDLEQIEDNITYFADKLKIKILPTHKTKYLEQKDNIVYEQ 234

Query: 231 LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
           L+      + +     +          ++   I                        +  
Sbjct: 235 LI-----KLNTDNKNEKNNQKLNFSFLTKEEFILKYDKFPKLMLNLQELVSKINYSNNIF 289

Query: 291 ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                + K   D+  +    L+ K     + ++      +     +Y +RL  EL +I++
Sbjct: 290 DDKFHLPKINKDVLLDSSKILKKKTWENFKKKI---NTKENKIYSEYVKRLKHELKIISQ 346

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           MK+  YFLIVAD I +AKKNNI VGPGRGS  GS+  + L IT+IDPL++ L+FERFLNP
Sbjct: 347 MKYEDYFLIVADIISYAKKNNILVGPGRGSSVGSLVCFCLDITEIDPLKYDLIFERFLNP 406

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
            R  MPD D+DF  ++R+ VI YV+NKY +  VA +ITF        +  +         
Sbjct: 407 QRTKMPDIDLDFPDNQRENVINYVKNKYKNNNVANLITFLHFPMNFLIDKIA-------- 458

Query: 471 QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
             +       ++    +S          +     D     +  I+  +  + R   TH +
Sbjct: 459 -NNLYGYTNTDNLKKKISK---------KTLDKTDYKGKEIERIANIIIKIPRTTGTHIS 508

Query: 531 GIVIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
           GI++    L + +P+  +  +      TQF  K ++K GL K DFLG+K LTL+ K L  
Sbjct: 509 GIILSQENLLKTLPLQLNNNNKQTNYQTQFEDKNLQKIGLFKIDFLGIKALTLMNKIL-- 566

Query: 589 LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             ++   +++  IP DD +TY+LL  + T+ IFQLES+  +  L+ +QP    D+I ++ 
Sbjct: 567 --KKIKNLEIKNIPLDDIKTYNLLKEQKTISIFQLESTTAKNVLKKIQPCKFSDLIDVLG 624

Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
             RPG I+ I  Y   KN   K V +HPLI  +LK T GVIIYQEQ+MQI    + Y+L 
Sbjct: 625 FNRPGTINFINEYIRNKNTNIKKVFLHPLIHEILKPTHGVIIYQEQIMQIIIKFANYNLI 684

Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
           EAD  R A+ KK +  +  +K  FI  + +NG S      I++ +  FA+YGFNKSH+ A
Sbjct: 685 EADNFRNAISKKDQYFLINEKNTFIKKSMENGNSIEDTNKIYDHIYNFANYGFNKSHSVA 744

Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK--IKKFCQDARQFNIQIMPPSVNTPCV 826
           YA+I+Y+ +++KT+Y  EF    +     N +      F ++ +     I P   N+   
Sbjct: 745 YALITYRMSYLKTNYQKEFNLVLLNQFAKNNDWEATNNFIKEIKTEMKFIKPNIFNSSNQ 804

Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK---KLNRRVLE 883
              + + ++   L +IKGV     +++++    K F++ E+F  R+        N  +L+
Sbjct: 805 YNVLSEKKLIIPLISIKGVDNNFYQNLIKEKEQKKFENYENFKQRLKISLNLNKNENLLD 864

Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
           +L+F+GALD FG +R  L                             +    +    +++
Sbjct: 865 NLIFSGALDIFGLNRRTLY----------------------------EYKNINSERPKEY 896

Query: 944 SVENSSVRFENEQRVLGFYFS 964
              +       E++   F  S
Sbjct: 897 EEFSKIKLINEEKKAFKFDLS 917


>gi|148377433|ref|YP_001256309.1| DNA polymerase III DnaE [Mycoplasma agalactiae PG2]
 gi|148291479|emb|CAL58864.1| DNA polymerase III, alpha subunit [Mycoplasma agalactiae PG2]
          Length = 977

 Score =  343 bits (880), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 275/1032 (26%), Positives = 469/1032 (45%), Gaps = 106/1032 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+ L   + YS LE  + + +++     + + A+ ++D NN+F+  EF ++  A  I+PI
Sbjct: 4    FIDLYNTTEYSFLESLIKVKDLVRLSKENGKRAVVLSDHNNMFALGEFLKQCAAYEIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  LD++                     +LL    EG++                    
Sbjct: 64   IGVDLDVEE-----------------SRFILLAKNYEGFK-------------------- 86

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                                    I+      S +  +        +  D L++    H 
Sbjct: 87   -----------------------LINSLILKKSREEIK-----LSDIISDNLFI--IDHP 116

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                Y +++  +L+              +       +    + V  + ++  +D   +  
Sbjct: 117  SNGLYAKNEHHKLSDNKN----------YYISSPDSSIPNSIYVKENKLIDVEDNETLNI 166

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
               L N  E    FS   +   ++ +   R +FI+       P+   K     + EE+N 
Sbjct: 167  LLKLGNNKEANYNFSYFEDYTTDS-DFLARINFIVDNCNVTFPKKELKLASFCESEEKNY 225

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                 +  ++  LA+   A   +      R+++E +VI ++ F  YFLI++D I++A  N
Sbjct: 226  --ELFIEKIKQGLAKHKKALLPYKTAVNDRINYECSVIKKLVFINYFLIISDMIEYADNN 283

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
             I +GPGRGS AGS+ +Y L IT I+PL+++LLFERFLN D++S PD DID   DRRDE+
Sbjct: 284  GISIGPGRGSAAGSLISYLLGITKINPLKYNLLFERFLNIDKVSWPDIDIDIQDDRRDEI 343

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
              Y+QNKYG  +VA I TF ++  K A+RDVGR L +P S V+R+ K I     +    +
Sbjct: 344  FAYLQNKYGKSKVAVISTFQTMGTKQAIRDVGRMLDIPLSDVNRISKSINAFANYSSIEE 403

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
              A +  F +   +    ++ +    KL+GL R    HAAG++I D+ L++ VP++ +  
Sbjct: 404  EFAKNLTFNKEVSSLKDYEKFINHVSKLQGLPRQYGIHAAGLIISDKDLNEYVPVFENAY 463

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP---FDDHE 607
            S L V    M+++E  GL+K D LGLKTLT ++     +++  +  +L         D  
Sbjct: 464  SFLQVQV-PMEFVEDFGLLKIDLLGLKTLTEIKHIEKRISKLKLFDELVYENDLELQDPM 522

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
              +LL    T G+FQ+ESSGM+  ++ +     ED+ A++SLYRPGP + I  Y N +  
Sbjct: 523  AINLLNNGNTEGLFQIESSGMKSTIKKVGIQSFEDLFAIISLYRPGPKEYIKDYANNRKN 582

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             + I  I P+ D ++  T G+IIYQEQ+M+IAQ ++  S ++AD+LRRA+ KK + E+ K
Sbjct: 583  PKLIEKIDPVYDEIVAPTYGIIIYQEQIMEIAQAVAKMSFAQADLLRRAISKKNEAELHK 642

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
             +  F  G  +N  S      I++ + KFA YGFNKSHA +YA ++ + A+ K  YP  +
Sbjct: 643  YRNTFFEGGLRNNFSIESLTKIYDKIEKFAQYGFNKSHAVSYAYLTMKMAYYKARYPQVY 702

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
             +A ++    +  KI  F  + +  N  +  PS+        V +  IY     IKG+G 
Sbjct: 703  FSALISNSYGDQNKIASFVNELKNMNFSVYSPSIIHFTNSAIVDNGDIYLPFNMIKGLGA 762

Query: 848  TTARHI-MEASADKPFD--SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQS 904
             + + I ++   +  +   SL +   R+    +   ++ +L+ A     FGY     +  
Sbjct: 763  ESIKKIALDIKENGQYKDLSLFEILLRLRFAGIKNSMISTLIRANVFRSFGY--QDYIGG 820

Query: 905  LDNIQKYAQWVEKNRTNKHENIFA--HEKGTFSDKITLEKFSVENSSVRFENEQRVLG-F 961
            +D + +    +     N   +I      +G       +E  S  N      NE  +LG  
Sbjct: 821  VDLLMQEEYNLLSKGANSFADIANNLDFEGYKKASENIEMQSKFNLEEESRNEIELLGNI 880

Query: 962  YFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
            Y      + YK     K       + +   +G+      +++ K++ K +       +  
Sbjct: 881  Y------NAYKTVQYEKKYKYRLSDLLKM-QGSFSTAIEIII-KKEPKDK---PYAIIEV 929

Query: 1021 SEPAKEYEANFF 1032
             +        FF
Sbjct: 930  CDRT--LNYTFF 939


>gi|146320384|ref|YP_001200095.1| DNA polymerase III, alpha subunit [Streptococcus suis 98HAH33]
 gi|145691190|gb|ABP91695.1| DNA polymerase III, alpha subunit [Streptococcus suis 98HAH33]
          Length = 822

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 242/720 (33%), Positives = 390/720 (54%), Gaps = 36/720 (5%)

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
              L  R  QG   KG     Y++RL+ EL++I +M+F  YFLIV D +++ +     +G 
Sbjct: 28   EELYERSYQGLEEKGLTNSLYKERLEKELSIIHQMEFDDYFLIVWDLLRFGRSQGYYMGM 87

Query: 377  GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
            GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R SMPD DID     R + IRYV++
Sbjct: 88   GRGSAVGSLVAYALNITGIDPVKHNLLFERFLNAERYSMPDIDIDIPDIHRADFIRYVRD 147

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
            +YG    AQI+T+ +  AK A+RDV +    P  ++  + K I    +      A   ++
Sbjct: 148  RYGSTHAAQIVTYSTFGAKQAIRDVFKRFGTPEYELSNITKKISFRDSLT---SAYQRNA 204

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
             FR+   +     +   I+Q++EG  R  S HAAGIV+ D  L+  +P+      D+ VT
Sbjct: 205  AFRQIINSKIEYQKAFAIAQQIEGQPRQTSIHAAGIVMSDEELTDTIPLKIG--DDMLVT 262

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTTK 615
            Q++   +E  GL+K DFLGL+ LT +QK  + + +R  + +D++ I  +D +T  L    
Sbjct: 263  QYDAHAVEANGLLKMDFLGLRNLTFVQKMAEGVRERYQQEIDIAKIDLEDKKTLELFAAG 322

Query: 616  GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
             T GIFQ E  G    L  ++P   EDI+A  SL RPG  D    +  RK+G+E +  + 
Sbjct: 323  RTKGIFQFEQPGAISLLRRVKPGRFEDIVATTSLNRPGASDYSDNFVKRKHGQETVDLLD 382

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
            P I P+L+ T G+++YQEQVMQIAQ+ +G++L +AD+LRRAM KK  +EM   +  F+ G
Sbjct: 383  PTIAPILQPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNAQEMQAMEAEFLQG 442

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            A KNG ++  A  IF ++AKFA YGFN+SHA AY+ +++Q A+ K+HY   F    +   
Sbjct: 443  ALKNGHAEENAREIFGMMAKFAGYGFNRSHAYAYSALAFQMAYFKSHYTDVFFDVMLNHS 502

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                     + +DA QF+ ++   ++N      K   +++Y  L  +KG+    A  I++
Sbjct: 503  SS------AYIEDAMQFDFEVARLTINNIPYHDKFDKSKVYLGLKTLKGLPKDLALWILD 556

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
                 P+ S+EDF  R+      + +L  L+  G  D F  +R +++++LDN+  +A+ +
Sbjct: 557  HR---PYKSVEDFILRLPDNFKKKDLLIPLIQIGLFDDFDANRKKIIENLDNLFVFAEAI 613

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL-DVYKPI 974
                       FA E  +++D          + S +F  EQ +LG   S HPL ++ +  
Sbjct: 614  --------GTFFAEESYSWTD------VEDYSDSEKFMLEQELLGVGISPHPLVNICRE- 658

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
                  + + +      GN   +   + + +  +T+K G ++ ++  ++  +  +   FP
Sbjct: 659  ----SKRSFTDLADLAVGNRATVLVQIQAIRLIRTKKTGEQMAFLRVTDTKRTLDVTLFP 714


>gi|256425821|ref|YP_003126474.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588]
 gi|256040729|gb|ACU64273.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588]
          Length = 982

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 234/1042 (22%), Positives = 409/1042 (39%), Gaps = 127/1042 (12%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L   + +SL  G +    ++         ++A+T+ N       F ++    GI+PIIG 
Sbjct: 3    LNCKTFFSLRYGTIDTKELVKTARQMGITSLALTNINITSDTWNFVKECQDNGIKPIIGL 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +               +         +LL    EG+  +   +S             +  
Sbjct: 63   E--------------CRNNHDLKY--ILLARNMEGWFYINRFLSD-----------HLHK 95

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
                                             A          F     +         
Sbjct: 96   DL--------------------------PFPDRAPA--------FPGVFAIYTWNTVPLQ 121

Query: 194  RYRESQVVQLAYT------------HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
               E ++V +                +  LV  +   F + + Y  H +L AV  + ++S
Sbjct: 122  DLYEHELVGIRKRDINKLFRVDTLCCQDKLVILHPVTFQNADYYHLHRILRAVDQNILIS 181

Query: 242  Q-KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            Q +D      D    +  ++   F   P  + NTV +   C       +P   ++     
Sbjct: 182  QLQDHTAAHTDEMFISPGDLFDSFEQYPHIISNTVRVMDACQISFDFKSPRNKKYFT--- 238

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
               + E+   LR  A  G+           G    + ++R++ EL+V+    F+GYFLI 
Sbjct: 239  -TSEAEDHALLRKLAYEGMLE-------RYGPDNTEAKERIEKELDVVQGQHFNGYFLIT 290

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
             D I++A++       GRGSGA S+ AY L ITD+DP+  +L FERFLNP R S PDFDI
Sbjct: 291  WDIIRYAQERGFFY-VGRGSGANSIIAYCLKITDVDPIELNLYFERFLNPYRSSPPDFDI 349

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            DF    RDE+I YV  KYG    A + T  + Q  A +R++G+   +P  ++D++     
Sbjct: 350  DFSWKDRDEIIAYVFKKYGTAHTALLGTVTTFQQNATIRELGKVYGLPKQEIDKILDTPF 409

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                          +       +    +     +S   +    H S HA GI+I + P+ 
Sbjct: 410  --------------NPDLSGDSVQQKILRYSQLMSNDNKAFPNHLSIHAGGILISEAPIH 455

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            Q    Y          Q +M   E  GL KFD L  + L  ++ ++  + +         
Sbjct: 456  QHCSTYLPP-KGFSTAQLDMHQAEAIGLFKFDILSQRGLGHIRDAISIIRENKGDDIDIH 514

Query: 601  I---PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                   D    H L T  T+G F +ES  MRQ L  ++      ++A  S+ RPG   +
Sbjct: 515  NVKAFMRDERVKHALQTVNTIGCFYIESPAMRQLLLKLECHDYLTLVAASSVIRPGVAQS 574

Query: 658  IVV--YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             ++  Y +    ++++V +H ++  +L ET G+++YQE V++I    +   L++AD+LRR
Sbjct: 575  GMMRQYVHNYRHQDQVVYLHEIVKEVLSETFGIMVYQEDVIKIVSRYANMDLADADILRR 634

Query: 716  AMGKKIKEEMDKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
            AM  K + + D QK  ++F +   K G    +   ++  +A F+ + F+K+H+A++AV S
Sbjct: 635  AMAGKYRGQGDFQKIEQQFFNNCKKLGRPDAVTAELWRQIASFSGFSFSKAHSASFAVES 694

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN 833
            YQ+ ++KT+YP EF+ A +          + + ++ ++  + I PP +N      ++ D+
Sbjct: 695  YQSLYLKTYYPAEFMVAVIN-NFGGFYNRELYFRELQKTGVTIKPPCINNSDYYTRINDD 753

Query: 834  RIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             +Y     ++G+       ++E      P+ SLEDF +R+         L+ L+  GA  
Sbjct: 754  IVYTGFIHVEGLEVKWMERVLEERGQYGPYASLEDFATRIAPPP---EQLDILIRIGAF- 809

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
             F     + L    ++   A+            +F  E         L       +    
Sbjct: 810  SFDTYTKKELLWKSSLLLKAKSPHAEHIQ---PLFREE----LPDCQLPML-AYTAHENA 861

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              E  +LGF     P  + +    +              G  I     +V  +   T KG
Sbjct: 862  FEEIALLGFPLCS-PFTILQH--DQSRYITANNFRQYT-GQTINALGYLVCTKGIHTSKG 917

Query: 1013 SRIGWVTFSEPAK-EYEANFFP 1033
              + + TF +      +   FP
Sbjct: 918  IPMSFGTFMDANGDFIDTVHFP 939


>gi|29567055|ref|NP_818618.1| gp80 [Mycobacterium phage Barnyard]
 gi|29425780|gb|AAN02134.1| gp80 [Mycobacterium phage Barnyard]
          Length = 1111

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 213/980 (21%), Positives = 376/980 (38%), Gaps = 106/980 (10%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV    H+++S  +     +    +       A+  ++  N+    +F ++    GI+PI
Sbjct: 3   FVSFHTHNTFSYADALGMPSIHAARAEELGMWALGTSNHGNVNDHAQFERECKERGIKPI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            GC++          T +          + +      GY+ L  ++++ Y+     Q   
Sbjct: 63  FGCEIYFSPVGEEDKTRRK-------THLTIFAMNEIGYRNLNRIITQSYVDA--YQWPT 113

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-------------QVAEKRLLTFKKL 177
           +    L E   EG+++L+G +   +                        A +++  +  +
Sbjct: 114 VSWENL-EANHEGILVLSGCADSLLSCTLLGGKYLGEQRSHVTDDDMDNARRQIQRYLDV 172

Query: 178 FGDRLYVNLQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
           FG+R  + +QR   YDR R     + +L+    +PLVAT +  +   E  +   +L A  
Sbjct: 173 FGNRFALEVQRFPHYDRTRALNPAIAELSRDTGVPLVATADVHYPFPEQNKLQALLHAAR 232

Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
             +               L        I  DL     ++ +  +   +   +        
Sbjct: 233 WKSSPDFAAEASWEHSANLTYPLSDKEIHDDLVATGLDSADAWKAIQYTSILAERCTVEL 292

Query: 296 IEKEC----DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
            + +      D     + +L  +   G + R+AQ          +Y +RL +E  +I   
Sbjct: 293 PKAKPLRFVCDKGLTAKQQLSREIAKGWKYRVAQ-RPDMARRKAEYVKRLQYEFKIITDK 351

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---FSLLFERFL 408
            F  YFL+++D ++ AK  +I VGP RGS A S+ +Y L IT+IDPL      ++FERF+
Sbjct: 352 DFGDYFLVISDLVRRAKDKSIDVGPARGSAAASLISYLLRITEIDPLHPLFNKMVFERFI 411

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
           +P R   PD D+DF  ++R E+    +N YG E VA +        K  L+DV RA ++P
Sbjct: 412 DPFRSDYPDIDLDFDDEKRWEIELDAKNLYGPENVASVANNTGYHGKNTLKDVARAYKLP 471

Query: 469 YSQVDRLCKLI--------PNDPAHPVSLQAIADDSRFREARLADPSV--DRLLEISQKL 518
                 + K            + +    L++ A          A        +   S   
Sbjct: 472 LETFKAIAKRTTVRVETDDKRNDSISDVLESYATHPEIAGLIEAHADKLAMAVALESGNG 531

Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS------DLPVTQFNMKWIEKAGLIKFD 572
           +G    +S HA G VI   P+  +  +Y   +        + V  ++ +  E  G++K D
Sbjct: 532 DGNLHSSSVHACGFVIASDPIPDVCAIYLKDKGSGSKKTKVQVIPYDKRDAESLGMLKVD 591

Query: 573 FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH------------------------ET 608
           FLG  T+  +     +      ++ LS+    D                           
Sbjct: 592 FLGSATMGAIGLMRKWSRVELEELYLSIYKDYDRWIRVQKRIKESGGKRVGFTANRFDNI 651

Query: 609 YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKN 666
                    +GI Q E    RQ    +QP   +++ A  +L RPGP        Y   KN
Sbjct: 652 LKRFRNDDVVGIMQFEGGTTRQVCRNVQPVDFDELAACTALSRPGPYYGGQYTDYVAVKN 711

Query: 667 GKEKIVSIHPL-IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
           G++    IHP   D  +  T G I+YQEQ+M I + L+G+  +E   +R+ +GKK+ E  
Sbjct: 712 GEKDWARIHPKGFDRHVAFTFGQIVYQEQIMWILRDLAGFDNAEVLRVRKIIGKKLGEFQ 771

Query: 726 DKQKERFIS--GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            +  ++      A   G+    A+ +F  +   A Y FN +HA +YA+I+Y     K  +
Sbjct: 772 FEAIKQAFIDGCAQTCGVDPDTALRVFGAIRTAAGYAFNIAHAYSYALIAYWQMGFKMDH 831

Query: 784 PVEFLAASMTLEMDNVEKIKKFC---QDARQFNIQIMPPSV------NTPCVDFKVGD-- 832
             EF A+++    D  ++I +     QDA    I I    +        P  D       
Sbjct: 832 TTEFFASTLYKNGDGKKEIPRRTAVLQDAEAHRIGIGGWDLNLSGANWRPYYDHSAHSRN 891

Query: 833 -NRIYYSLAAIKGVGTTTARHIMEASADKPFDSL--EDFC-------SRVDSKKLNRRVL 882
              +      I G+   TA+ I++   + P+  +   D          +     + +   
Sbjct: 892 LGTVMPGFQQIPGIAEATAKAILDWRDNLPWQDIPTADDWHVLGLDNKKGGCPGIGKDTA 951

Query: 883 ESLVFAGAL----DCFGYSR 898
           E +    A     D  G +R
Sbjct: 952 EKIA---AFVSKPDALGVNR 968


>gi|325522046|gb|EGD00720.1| DNA polymerase III, alpha subunit [Burkholderia sp. TJI49]
          Length = 544

 Score =  336 bits (862), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 166/565 (29%), Positives = 254/565 (44%), Gaps = 33/565 (5%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A AAG+ 
Sbjct: 10  PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAAGLP 69

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIG    +   D                    L    +GY  L ELVS   +  + K S
Sbjct: 70  LIIGSHFRLTAADGAPAIAFS-----------ALAMNRDGYGNLCELVSLGRMRGK-KGS 117

Query: 129 VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            R+    L++       L  L    +  I    F  + Q  + ++  F ++FGDR +V L
Sbjct: 118 YRLAPRDLEQPDAPFTHLRGLPDCIA--ILSPDFPANEQRLDAQVEWFARVFGDRAWVAL 175

Query: 187 QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             H R  D      V ++A  H +P+VAT+  L          DVL ++     V  +  
Sbjct: 176 TLHARAMDDIHRGVVERVAARHGVPVVATSWPLMHVRSRKPLQDVLTSIRLGRPV-SECG 234

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + P+     RS +         ALE TV +ARRC+F L       P  +     D+  
Sbjct: 235 YELAPNAERHLRSRLRLANLYPAGALEETVRVARRCTFSLDDLKYEYPDEVVPAGYDV-- 292

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                LR +   G + R   G         D + +++ EL +IA + +  YFL V D +Q
Sbjct: 293 --ATYLREQTYIGAQRRFPAG------IPVDVQAQIEHELQLIAELNYEAYFLTVYDIVQ 344

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A++N I    GRGS A S   Y L +T++DP R S+LFERF++ +R   PD D+DF   
Sbjct: 345 FARQNGIL-CQGRGSAANSAVCYCLGMTEVDPSRQSMLFERFMSKERNEPPDIDVDFEHQ 403

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EV++Y+  KYG +R A      + + ++ALR+ G+AL +  + VDR+ K      + 
Sbjct: 404 RREEVMQYIYRKYGRDRAALTAAVSTYRPRSALREAGKALGVDPAIVDRVAKSHHWFDSR 463

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
              LQ  A+           P   +    + +L G  RH S H+ G VI    L++LVP+
Sbjct: 464 ADLLQRFAE----AGLDPEAPLNQQWAAFAAQLLGYPRHLSQHSGGFVISRGKLTRLVPV 519

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIK 570
                 D  + Q++   IE  G++K
Sbjct: 520 ENAAMEDRTIIQWDKDDIEALGILK 544


>gi|260220163|emb|CBA27426.1| Error-prone DNA polymerase [Curvibacter putative symbiont of Hydra
            magnipapillata]
          Length = 1035

 Score =  334 bits (855), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 138/538 (25%), Positives = 233/538 (43%), Gaps = 41/538 (7%)

Query: 515  SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            + +L+   RH S H  G V+   PL++LVP+      D  V Q++   ++  GL+K D L
Sbjct: 460  ATQLQSFPRHLSQHVGGFVLTQGPLTRLVPVENASMPDRSVIQWDKDDLDAVGLLKVDVL 519

Query: 575  GLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
             L  L+ +++ L  +   R V + +  +P +D  TY ++    T+G+FQ+ES      L 
Sbjct: 520  ALGMLSAIRRCLHLIGQWRDVPLRMQDVPAEDPATYAMICQADTVGVFQIESRAQMSMLP 579

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
             ++P C  D++  V++ RPGPI   +V+     +   + +    P ++  LK T GV I+
Sbjct: 580  RLKPKCFYDLVVEVAIVRPGPIQGGMVHPYLKARANPQAVTYASPGLEEALKRTLGVPIF 639

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIF 750
            QEQVMQIA   + ++  EAD LRR+M     K  + K  +R + G  KNG ++  A  +F
Sbjct: 640  QEQVMQIAMAAADFTAGEADQLRRSMAAWKRKGGVGKFYDRLVGGMLKNGYTQEFADTLF 699

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            + +  F +YGF +SHAA++A++ Y + W+K H P  FLAA +  +        +  QDAR
Sbjct: 700  KQIEGFGEYGFPESHAASFALLVYVSCWLKRHEPACFLAAMLNSQPLGFYGPAQLVQDAR 759

Query: 811  QFNIQIMPPSVNTPCVDFKVGDN----------------RIYYSLAAIKGVGTTTARHIM 854
               +++    V     D  +                    I   L  + G+    A  I 
Sbjct: 760  HHGVEVRAMDVLHSAWDCTLEQPQAQHPTPNGWTLQTQAAIRLGLRMVSGLQQAVAERIC 819

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
               A+ PF S +D   R     L+   L++L  A AL      R Q +     ++     
Sbjct: 820  AERANGPFTSTQDLALRC---ALDAGDLKALASADALISLSGHRRQQVWDASALRPAPAL 876

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
            ++               G   ++  L      +       +    G     HPL + +  
Sbjct: 877  LQ---------------GVPIEEDEL-ALPPADEGEEVTFDYAATGLTLRSHPLQLLREQ 920

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            L K  +    +      G  +R   +V ++QQ  T KG  + +VT  +         +
Sbjct: 921  LSKKNLLTAAQMRDYPSGRLVRACGIVTARQQPGTAKG--VVFVTLEDETGSVNIIVW 976



 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 96/370 (25%), Positives = 159/370 (42%), Gaps = 19/370 (5%)

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
           K   R+  +WL +        L       +        ++ A    ++ + LFG   ++ 
Sbjct: 3   KGDYRV--AWLGQPEASPWHTLRHCE--VLLHLPLAIKTEAACAIAMSARGLFGINSWLA 58

Query: 186 LQRHRGYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-SQK 243
           +    G  +  E +   Q+A    L  +AT      +      HDVL AV     V    
Sbjct: 59  VTAGLGGMQALERAHWQQIAAVSGLAPLATGQVRMHTRSRKPLHDVLTAVRCGLPVAQCG 118

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              +   +H+L++R+ + ++F+    A    V      +     +   +   +       
Sbjct: 119 FALQANAEHHLRSRARLAALFTPDELAHTLVVAGRCSFTLDALRYQYPMEAVL------P 172

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                  LR     G   R   G           R +++ EL +IA MK+  YFL V D 
Sbjct: 173 GHTPAQTLRQYTEEGALERYPTGM------PPHVRTQVEHELALIADMKYEMYFLTVHDL 226

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           +++A+   I    GRGS A S   Y L +T++DP R ++LFERF++ +R   PD D+DF 
Sbjct: 227 VRFARGRGIL-CQGRGSAANSAVCYCLGVTEVDPSRMNVLFERFISKERDEPPDIDVDFE 285

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             RR+EVI+Y+  KYG ER A      S + ++ALRDVG AL++P   +  + K  P   
Sbjct: 286 HQRREEVIQYIYAKYGRERAAITAVVASYRPRSALRDVGWALEIPEVLITAMAKEHPGMY 345

Query: 484 AHPVSLQAIA 493
           +  V ++ + 
Sbjct: 346 SRAVLVERLQ 355


>gi|309807095|ref|ZP_07701074.1| DNA polymerase III, alpha subunit [Lactobacillus iners LactinV
           03V1-b]
 gi|308166525|gb|EFO68725.1| DNA polymerase III, alpha subunit [Lactobacillus iners LactinV
           03V1-b]
          Length = 658

 Score =  333 bits (854), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 212/668 (31%), Positives = 325/668 (48%), Gaps = 21/668 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6   LQNISSFTLLKSPISVEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
           QL I+          G         ++++     GYQ ++ L S + L  + GK+ + + 
Sbjct: 66  QLRIN----------GLINENQNFDLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
           L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116 LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLVKILPQSSNLYLGVFADK 174

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
               Y  S V  L+    L LVA  +  ++   D    +VL ++  +  +       +  
Sbjct: 175 SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLKSIDDNQSIRDGYELTLKH 233

Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                 +++     S     +   +   ++ S    V        + K            
Sbjct: 234 VGNHYLKTKDKLCESYNSLGILEALRNTKQVSDDSNVEIKFTMPQLPKFIQHKFDTSYEF 293

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           L + A+ GL+ +  +  I        Y  RL +EL +I  M F+ YFLIV D I +    
Sbjct: 294 LHHLAMTGLQAKFNKHDI-----PSKYLNRLKYELKIIDEMGFNDYFLIVWDVINYCHSI 348

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   +RR+EV
Sbjct: 349 GILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPDNRRNEV 408

Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
           + Y+ +KYG + VAQI++F +  AK  L DVG A       +D   K IP   +      
Sbjct: 409 VLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITIDSWLKAIPKSKSKITLSD 468

Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
           A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V +     
Sbjct: 469 AYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVGLQNGSL 528

Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
             +PVTQ   K++E  GL+K DFLGL  LT+L  +L+ +   G+K+D+  IP DD  T  
Sbjct: 529 -GIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLDDPATIK 587

Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
           L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  RK  K++
Sbjct: 588 LFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRRKIRKKR 647

Query: 671 IVSIHPLI 678
                P +
Sbjct: 648 WYIQIPYL 655


>gi|218197064|gb|EEC79491.1| hypothetical protein OsI_20540 [Oryza sativa Indica Group]
          Length = 430

 Score =  333 bits (854), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 188/446 (42%), Positives = 256/446 (57%), Gaps = 21/446 (4%)

Query: 41  QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
            PA+AITD  NL   ++F   A  AGI+PIIG    +          Q +     +  + 
Sbjct: 1   MPALAITDFTNLCGLVKFYGSAHGAGIKPIIGADFHV----------QSEVLGDELAQLT 50

Query: 101 LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
           +L S  EGYQ L  L+SR Y    G     I   WL E   EGLI+L+G   G + +   
Sbjct: 51  VLASNNEGYQNLTLLISRAYQRGYGAAGPIIDRDWLIE-HREGLILLSGARQGDVGKFLL 109

Query: 161 FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLF 219
             +    ++ L  +++ F D  Y+ L R    D        V LA    LP+VATN+  F
Sbjct: 110 RGNQAQVDQCLDFYQQYFPDCYYLELIRTGRPDEENYLHAAVALATERGLPVVATNDVRF 169

Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
           L E+D++AH++ +A+     +    RPR  +P  Y+++  EM  +F+D+PEAL N+VEIA
Sbjct: 170 LVEDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEDEMCELFADIPEALLNSVEIA 229

Query: 279 RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQ 335
           +RC+  +++           +        E+ L  K+  GLE RL         +     
Sbjct: 230 KRCNVTIRLGEYF-----LPQFPTGDMSTEDFLVLKSKEGLEERLEFLFPDPEVRAQRRP 284

Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
           +Y +RLD EL VI +M F GYFLIV +FIQW+K NN+PVGPGRGSGAGS+ AYAL ITD+
Sbjct: 285 EYDERLDVELKVINQMGFPGYFLIVMEFIQWSKDNNVPVGPGRGSGAGSLVAYALKITDL 344

Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
           DPL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V   YG E V+QIITFG++ AK
Sbjct: 345 DPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAEMYGREAVSQIITFGTMAAK 404

Query: 456 AALRDVGRALQMPYSQVDRLCKLIPN 481
           A +RDVGR L  PY  VDR+ KL   
Sbjct: 405 AVIRDVGRVLGHPYGFVDRISKLTKY 430


>gi|309805737|ref|ZP_07699777.1| DNA polymerase III, alpha subunit [Lactobacillus iners LactinV
           09V1-c]
 gi|308164990|gb|EFO67233.1| DNA polymerase III, alpha subunit [Lactobacillus iners LactinV
           09V1-c]
          Length = 658

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 210/668 (31%), Positives = 324/668 (48%), Gaps = 21/668 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6   LQNISSFTLLKSPISVEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
           QL I+          G         ++++     GYQ ++ L S + L  + GK+ + + 
Sbjct: 66  QLRIN----------GLINENQNFDLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
           L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116 LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
               Y  S V  L+    L LVA  +  ++   D    +VL ++  +  +       +  
Sbjct: 175 SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDIFLQEVLKSIDDNQSIRDGYELTLKH 233

Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                 +++     S     +   +   ++      V        + K            
Sbjct: 234 VGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFDTSYEF 293

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           L + A+ GL+ +  +  I        Y  RL +EL +I  M F+ YFLIV D I +    
Sbjct: 294 LHHLAMTGLQAKFNKHDI-----PAKYLNRLKYELKIIDEMGFNDYFLIVWDVINYCHSI 348

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            I  GPGRGS AGS+ AY L IT +DPLR+ LLFERFLNP R  MPD D+D   +RR+EV
Sbjct: 349 GILTGPGRGSAAGSLVAYCLNITRVDPLRYDLLFERFLNPARHQMPDIDLDIPDNRRNEV 408

Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
           + Y+ +KYG + VAQI++F +  AK  L DVG A       ++   K IP   +      
Sbjct: 409 VLYMFHKYGMDHVAQILSFSTFAAKQVLHDVGNAFSFNKITINSWQKAIPKSKSKITLSD 468

Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
           A      FR    A  S     E+++K+EGL RH S HAAG+VI D  +++ V +     
Sbjct: 469 AYKLSKDFRMLVNATESNKLFFEVAKKIEGLPRHYSIHAAGLVISDMSIAKTVGLQNGSL 528

Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
             +PVTQ   K++E  GL+K DFLGL  LT+L  +L+ +   G+K+D+  IP DD  T  
Sbjct: 529 -GIPVTQQTKKYVEALGLLKIDFLGLCNLTILDNALNEVKMSGIKLDMDKIPLDDPATIK 587

Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
           L     T  IFQ ES G+R AL+ MQP+  +DI+A+ +LYRPGPI NI  Y  RK  K++
Sbjct: 588 LFQKGKTDDIFQFESQGIRNALKKMQPNSFDDIVAMNALYRPGPIKNIDSYIRRKIRKKR 647

Query: 671 IVSIHPLI 678
                P +
Sbjct: 648 WYIQIPYL 655


>gi|169344095|ref|ZP_02865081.1| DNA polymerase III subunit alpha [Clostridium perfringens C str.
            JGS1495]
 gi|169297830|gb|EDS79927.1| DNA polymerase III subunit alpha [Clostridium perfringens C str.
            JGS1495]
          Length = 610

 Score =  330 bits (846), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 160/487 (32%), Positives = 250/487 (51%), Gaps = 36/487 (7%)

Query: 583  QKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
                     RGV++DL  + FDD E Y ++    T+G+FQLES+GM   ++ ++PDC+ED
Sbjct: 3    DAVDMIKYNRGVEIDLDNLDFDDKEVYKMIGEGNTVGVFQLESAGMTSFMKELKPDCLED 62

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            IIA +SLYRPGP+  I  Y + K   + +  I P ++ +L  T GV++YQEQVM+I + L
Sbjct: 63   IIAGISLYRPGPMAEIPRYISGKRDPKSVEYIVPELENILNVTYGVMVYQEQVMEIVRKL 122

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISG------------ASKNGISKTIAVNIF 750
            +GYS+  +D++RRAM KK  + M+++++ FI G              +NGIS   A  IF
Sbjct: 123  AGYSMGRSDLVRRAMSKKKHKVMEEERKNFIYGIEDENGNIEVPGCLRNGISAEAANKIF 182

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            + +  FA Y FNKSHAAAYAVI +QTA++  +YPVEFLAA +   M N +K+ ++ + A 
Sbjct: 183  DSMMDFASYAFNKSHAAAYAVIGFQTAYLMRYYPVEFLAAMLNSVMGNSDKVSEYIRSAE 242

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFC 869
            +  IQ++PP +N     F V  + I + + AIK VG     +I ++      F SL DFC
Sbjct: 243  KLGIQVLPPDINESYTKFTVKGDTIRFGMGAIKNVGVNVVENIAKSRDEKGRFTSLMDFC 302

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            +++D   +N+R +ESL+ AG  D     R QLL   + I        K   +   ++F  
Sbjct: 303  NKIDLSIVNKRSVESLIKAGTFDSLKVYRSQLLSVFEKIMDGVYSQRKKNIDGQMSLFGA 362

Query: 930  --EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
              E+   + +I        N       E+ + G Y SGHPLD Y+  L++      E+ +
Sbjct: 363  LQEESESNLEIRYPNIKEFNKKYMLAMEKEMTGLYMSGHPLDDYEKPLKEQTSITIEKII 422

Query: 988  A---------------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
                                     G  + +  ++ +  +K TR  + + +    +    
Sbjct: 423  EAQKNLNEQKNVELEDLVLDSSLTDGTRVVIGGILTNVSRKVTRNNTLMAFAKVEDLTGY 482

Query: 1027 YEANFFP 1033
             E   FP
Sbjct: 483  LECVIFP 489


>gi|172058225|ref|YP_001814685.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum 255-15]
 gi|171990746|gb|ACB61668.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum 255-15]
          Length = 1055

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 281/1026 (27%), Positives = 461/1026 (44%), Gaps = 93/1026 (9%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L V ++YS L+  + ++  LD++      A AI    +L     F        + PI+
Sbjct: 2    VQLNVRTAYSPLQSTIRMDRYLDEVKRRGFSAAAIC-ETSLTGVPAFMAGCKQRELIPIV 60

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL--VSTAEGYQRLIELVSRMYLLDQGKQSV 129
            G +  I+  +                 + +L    T+ G + L  L S            
Sbjct: 61   GFEQVIEPDE-----------------LTILWYAKTSLGLKVLYRLAS------------ 91

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
                    E  +E + +L      P D A                       + + ++  
Sbjct: 92   ----EMPVEDYSELIAVLEPKRQAPEDEARLR------RLVAQWMGSAHKATILLGVKAV 141

Query: 190  RGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            R   +R    +  Q A    +  +  +   +L  E+ +A   L A+   T        +V
Sbjct: 142  RSTVERDSRERYRQAANALGIETIPIDPVRYLFREEADAFQALRAIDEGT---MFAEQKV 198

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
            +   +LK   E+   F+D    L      ++      +            +  D      
Sbjct: 199  SRSAHLKLTEELQDQFTDRELRLLTRWAESQ------ETLTLPFQSRPLPQVTDDSNHAL 252

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            N L +            G +A G+  ++  +RL +EL VI +  F+ YFLIV D ++ AK
Sbjct: 253  NRLAH-----------DGLLAHGHVGEEATKRLQYELEVIEKTGFADYFLIVEDLVRHAK 301

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
               I VGPGRGS AGS+ +YAL IT +DPL++ LLFERFLNP+R++MPD DID    RR+
Sbjct: 302  SEGIRVGPGRGSAAGSLVSYALGITTVDPLKYGLLFERFLNPERITMPDIDIDIEDARRE 361

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            EV+ Y+  +YG + V QI T  +L AKAALRDV RAL+    + D   K          +
Sbjct: 362  EVLEYLVERYGKQHVGQIGTLSTLGAKAALRDVARALEFSKDETDAAAKQ----LGKVTT 417

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            LQ +   +             +LL+++Q +EGL R  S HAAG++IG   L +  P+   
Sbjct: 418  LQGLEQQASIYRWFSGSEKRRQLLQLAQAIEGLPRQRSIHAAGVIIGSEELIETTPVDL- 476

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
              S   VTQ+ MK IE+ GL+K D LGL+ LT L++    +        +  IP +D  T
Sbjct: 477  HASGRFVTQYLMKAIEQQGLLKIDLLGLRNLTRLRQMEQLIQHAYPDFSVERIPDEDKAT 536

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L     T  IFQ ES+GM+Q L  ++P+  ED++A +SL+RPGP+  I +Y  RK G+
Sbjct: 537  LRLFAKGETDQIFQFESAGMKQTLREVKPNRFEDLVATMSLFRPGPMKFIDLYAKRKAGQ 596

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
                 +HP+++ +L  T GVI+YQEQ+M+I + ++G++L++AD+LRRA+ KK  + ++ +
Sbjct: 597  -PYQMVHPILEEILTATYGVIVYQEQIMEITRRVAGFTLAQADLLRRAISKKSSQSVEAE 655

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            K+RFI GA +NG   T+A  +++ + +FA YGFN+SHA AY  ISY   +MK HYP  F 
Sbjct: 656  KKRFIEGALQNGFDLTVAETLYDQIERFAGYGFNRSHAVAYTKISYALGYMKAHYPQIFS 715

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT 848
              S+       ++ ++  +  R+  + ++PP +        +    I   +  ++G+   
Sbjct: 716  LVSI-------DQPERLVRVMREKRLPVLPPDIWMSDFRSTLEGKGIRLGIQTLRGITEK 768

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CFGYSRMQLLQSLDN 907
                + EA+      ++    S V   K  R  +E L+++GA D      R    Q + +
Sbjct: 769  DFHTLREAAKTS--QTITQLLSAVGWGKKERAKIELLLYSGAFDRSTHGDRGLAEQEVLD 826

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
                A             +          K T +         R   E+  LGF+ +  P
Sbjct: 827  YFTMASNTL---------LPDELASLGRRKTTTQTNRTATDWARL--ERESLGFWLTYSP 875

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            L      ++      + ++++        L   +   ++ KT++   +  +   +     
Sbjct: 876  L---MTAMKPPVETTHFQTLSLEGNQTNYLVCYIEQIREFKTKRAQTMAVIHAVDGYTTE 932

Query: 1028 EANFFP 1033
            E   FP
Sbjct: 933  EVVVFP 938


>gi|86134487|ref|ZP_01053069.1| DNA polymerase III alpha subunit [Polaribacter sp. MED152]
 gi|85821350|gb|EAQ42497.1| DNA polymerase III alpha subunit [Polaribacter sp. MED152]
          Length = 1007

 Score =  330 bits (845), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 247/1038 (23%), Positives = 435/1038 (41%), Gaps = 98/1038 (9%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H+ YSL  G  S   +L     +    IA+TD NN  + + F Q+A    I+P+IG 
Sbjct: 3    LNCHTYYSLRFGTFSETELLQLAVKNNINCIALTDINNTSACMNFVQQARKTTIKPVIGV 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVRIC 132
                                      V +    +G+Q++   L S +             
Sbjct: 63   DF----------------RNGNSQQFVAIAKNNKGFQQINAYLSSFLESKTNFPNKP--- 103

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
                 +   +  I+       P ++A   N +             F    +V +      
Sbjct: 104  -----KYLADVFIV------YPFEKALELNLTS------------FKKNEFVGVS-VAEI 139

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
            ++ R S +      ++  +V        +++D+ AH +L A+  + ++S+  +     + 
Sbjct: 140  NKLRFSYL----NNYKDKIVIQQQVTVRNKKDFNAHRLLRAIDKNILLSKLPKTEECLET 195

Query: 253  YLKNR-SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             +     ++ + F D    ++NT  +  +C+     +         +   +   E+   L
Sbjct: 196  DIMFAYQDLKNHFKDFENVIQNTENLLNQCTINFGFNENRTN-QNLEVYTNSFDEDCQLL 254

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            +      L+ R A          +    RL+ EL VI  +KF  +FLI  D I +AK+NN
Sbjct: 255  KKLCAENLKKRYAN-------PTEKVYNRLEKELKVIIDLKFVSFFLINYDIISFAKRNN 307

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
                 GRGSGA S+ AY + ITD+DP+   L FERF+NP R S PDFDIDF    RD V 
Sbjct: 308  F-FHVGRGSGANSIVAYIIGITDVDPIELDLYFERFINPFRASPPDFDIDFSWKDRDIVT 366

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             Y+ N++ +  VA + T+ + + +A +R++G+   +P  ++D+L K +     +  S + 
Sbjct: 367  NYIFNRFKN--VALLATYVTFKYRAVVRELGKVFGLPKEEIDKLSKGVSTLGNYSRSQKL 424

Query: 492  IADDSRFREARLADP--SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                +   +   +        +L+  + +EG   + S H+AGI+I D+P+          
Sbjct: 425  ANTTNNLNKENKSQFDSMAHLVLKYGKLIEGFPNYVSVHSAGILILDKPIHYFSATSLPP 484

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-----LSLIPFD 604
              + P  QF+M   +  G+ KFD LG + L  ++ +L  + +                 +
Sbjct: 485  -KNFPTVQFDMNIADDVGIFKFDILGQRGLAKIKDALILIKENNPNDPEIDITDIERFKN 543

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYN 662
            D+   +LL T G +G + +ES  MR  ++ +Q +    ++A  S+ RPG         + 
Sbjct: 544  DNNINNLLKTGGAIGAYYVESPAMRGLMQKLQTEDYLGLVAASSIIRPGVSSSGMKDEFI 603

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
             R    E   + +P++  ++ ET GV++YQE VM++A   +  +L EADVLRR M  K +
Sbjct: 604  KRHRYPEHRKNANPILLKIMPETYGVMVYQEDVMKVANQFADLTLGEADVLRRGMSGKYR 663

Query: 723  EEMDK--QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
               +    + +FI    K G    +   ++  +  FA Y F K H+A+YAV SYQ+ ++K
Sbjct: 664  SVSEFKAVENKFIENCRKKGFKDELIFEVWNQIKSFAGYAFAKGHSASYAVESYQSLFLK 723

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLA 840
             +YP+EF+ A +          + +  +A+     I  P +NT      V    IY    
Sbjct: 724  CYYPIEFMTAVLN-NGGGFYSTEHYIHEAKMRGATIELPCINTSDHPNIVKGKTIYLGFG 782

Query: 841  AIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
             +K +       I+     +  F+SL+DF  RV    ++   L  L+   A       + 
Sbjct: 783  YLKNLEHLLIERILSNRQTEGLFNSLDDFLDRVS---ISIEQLTILIRINAFRFTKKPKT 839

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
             LL             +KN       +FA +   F     LE   +E+   +      +L
Sbjct: 840  TLLW---EATFRINGTKKNELLSQVKLFAVQHQKFKI-PKLENHWLEDVYDQL----ELL 891

Query: 960  GF----YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
             F    YFS   ++ Y   ++   +  Y +        N+ L   +V+ +  KT KG  +
Sbjct: 892  DFTTYNYFSL-VVEAYHKHIKAKEMHKYAD-------KNVLLYGKLVTTRYNKTSKGKLM 943

Query: 1016 GWVTFSEPAKE-YEANFF 1032
               TF +     ++A  F
Sbjct: 944  RLSTFIDADGNYFDAVHF 961


>gi|313678740|ref|YP_004056480.1| DNA polymerase III subunit alpha [Mycoplasma bovis PG45]
 gi|312950242|gb|ADR24837.1| DNA polymerase III, alpha subunit [Mycoplasma bovis PG45]
          Length = 977

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 271/1034 (26%), Positives = 467/1034 (45%), Gaps = 110/1034 (10%)

Query: 11   FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
            F+ L   + YS LE  + + +++     + + A+ ++D NNLF+  EF ++     I+PI
Sbjct: 4    FIDLYNTTEYSFLESLIKVKDLVRLSKENGKKAVVLSDHNNLFALGEFLKQCNIYDIKPI 63

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            IG  LD++                     +LL    +G++ +  L+         K S  
Sbjct: 64   IGIDLDVED-----------------SRFILLAKNYDGFKLINSLI-------LKKSSQE 99

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            I +  +     + + ++   S+G             A+              Y++     
Sbjct: 100  ITIDDIV---NDNIFIIDHPSNGLY-----------AKNEHHKLSD--NKNYYISSPDSS 143

Query: 191  GYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
              +     E++++ +     L +V                                    
Sbjct: 144  LPNSIYIKENRLIDIEDNETLNIV------------------------------------ 167

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                     S+  +   +  +          R +FI+     I P+   K     + +EE
Sbjct: 168  ----LKLGNSKEANYNFNYFDDYTTDPVFLNRINFIVDNCNVIFPKKELKLASFCKTDEE 223

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
            N      ++ ++  L +   A   +      R+++E +VI  + F  YFLI++D I++A 
Sbjct: 224  NY--ELFISKIKQGLLKHKKALSPYKTVINDRINYECSVIKELGFVNYFLIISDMIEYAD 281

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
             N+I +GPGRGS +GS+ ++ L IT I+PL+++LLFERFLN D++S PD DID   DRRD
Sbjct: 282  ANDISIGPGRGSASGSLISFLLGITKINPLKYNLLFERFLNVDKVSWPDIDIDIQDDRRD 341

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E+  Y+Q+KYGH RVA I TF ++  K A+RDVGR L +P + ++R+ K I     +   
Sbjct: 342  EIFTYLQSKYGHNRVAVISTFQTMGVKQAIRDVGRMLDIPLADINRISKSINAFANYSSI 401

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
             +  A +  F +        ++ +    KL+GL R    HAAG++I D+ LS+ VP++ +
Sbjct: 402  EEEFAKNLVFNKEVSLIKEYEKFVNHVSKLQGLPRQYGIHAAGLIISDKDLSEYVPVFEN 461

Query: 549  VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP---FDD 605
              S L V    M+++E  GL+K D LGLKTLT ++     +++  +  +L         D
Sbjct: 462  ANSFLQVQV-PMEFVEDFGLLKIDLLGLKTLTEIKHIEKRISKNKLFDELVYENDLELQD 520

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                +LL    T G+FQ+ESSGM+  ++ +     ED+ A++SLYRPGP + I  Y N +
Sbjct: 521  PMAINLLNNGNTEGLFQIESSGMKNTIKKVGIQNFEDLFAIISLYRPGPKEYIKDYANNR 580

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
                 I  I P  D ++  T G+IIYQEQ+M+IAQ ++  S ++AD+LRRA+ KK + E+
Sbjct: 581  RDPSLIEKIDPTYDEIVAPTHGIIIYQEQIMEIAQAVAKMSFAQADLLRRAISKKNEVEL 640

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             K +  F  G  KN  S      I++ + KFA YGFNKSHA +YA ++ + A+ K  YP 
Sbjct: 641  HKYRNTFFKGGLKNNFSLDSLEKIYDKIEKFAQYGFNKSHAVSYAYLTMKMAYYKARYPQ 700

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
             + ++ ++    +  KI  F  + +  N  +  P++        V +  IY     IKG+
Sbjct: 701  VYFSSLISNSYGDQTKIASFVNELKNMNFSVYSPNITHFTNSAIVDNGDIYLPFNMIKGL 760

Query: 846  GTTTARHI-MEASADKPFD--SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            GT + R I ++   +  +   S+ +   R+    L   ++ +L+ A     FG+     +
Sbjct: 761  GTESIRKIALDIKENGEYKDLSIFEILLRLRFAGLKNSIISTLIRANVFRDFGF--QYYI 818

Query: 903  QSLDNIQKYAQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQRVL- 959
              +D + +    +     N  + I      +G       +E  S+ N      NE  +L 
Sbjct: 819  SGVDLLMQEEYNLLSKGANSFKEILHNLDFEGYKQASENIEMQSMFNLEEESRNEIELLG 878

Query: 960  GFYFSGHPLDVYKP-ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            G Y      + YK     K       + +      N  +A  +V K++ + +       +
Sbjct: 879  GVY------NAYKTVQYEKKYKYKLADLLKMH--GNYNVAIEIVVKKELRDK---PYVIL 927

Query: 1019 TFSEPAKEYEANFF 1032
               + +      FF
Sbjct: 928  EVCDRS--LNYTFF 939


>gi|332044349|gb|EGI80543.1| DNA polymerase III, alpha subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 985

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 247/1031 (23%), Positives = 431/1031 (41%), Gaps = 107/1031 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H+ YSL  G  S  ++LD    +   +I ++D NN  + L F  +A    I+P++G 
Sbjct: 3    LNCHTYYSLRYGTFSELDLLDLAKENNYDSIVLSDINNTSACLNFIHQANLRNIKPVVGI 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                                      V +     G++ L + +S+     Q K    + +
Sbjct: 63   DF----------------RNGAEQKFVGIAKNNVGFKELNDFMSQ---HSQHK----MLI 99

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
              L     E + ++                    EK L   KK F    ++ +  +    
Sbjct: 100  PDLA-PNFENVFIIYP-----------------FEKVLQLNKKCFEPYEFIGVSINDLK- 140

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            + R SQ+      H   LV         + D+ AH +L A+ ++ ++S+ ++       +
Sbjct: 141  KLRFSQL----KKHSQHLVFLQQVTIRDKGDFNAHRLLRAIDNNILLSKLEKTEECSIQH 196

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
                S  +         +    +       I             K   D  + +   L  
Sbjct: 197  KMLSSVELEKAFVEFPFILQNTKNILNQCSINFGFGNERKSQNLKVYTDSFENDFKLLER 256

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
                 +       +      ++  ++RL  EL  I  M+F  +FLI  D I +AK     
Sbjct: 257  LCKEKI-------STRYVAPSKKVKERLYKELETIKSMRFVSFFLINYDIISYAKSKG-Y 308

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
               GRGSGA S+ AY + ITD+DP+   L FERF+NP R S PDFDIDF    RD+V  Y
Sbjct: 309  FHIGRGSGANSIVAYIIGITDVDPIELDLYFERFINPFRASPPDFDIDFSWKDRDDVTAY 368

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            +  ++     A + T+ + + +AA+R++G+   +P  ++D+LCK   N            
Sbjct: 369  IFKRFK--HTALLATYNTFKYRAAVREIGKVFGLPKEEIDKLCKNNFN------------ 414

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                       D     +++ ++ +EG   + S H+AGI+I D+P+              
Sbjct: 415  -------YYKLDEFSKLVIKYAKLIEGFPNYISVHSAGILILDKPIHNYSATNLPP-KGF 466

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI-----PFDDHET 608
            P  QF+M   E  G+ KFD LG + L  ++ +L+ +++         I        D + 
Sbjct: 467  PTLQFDMNIAEDVGIFKFDILGQRGLAKIKDALEIISENRPDSPPIDITNIEAFKKDPKI 526

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKN 666
             +LL + G +G + +ES  MR  ++ +Q     +++A  S+ RPG   + +   +  R  
Sbjct: 527  NNLLKSGGAIGAYYVESPAMRGLMQQLQTQNYIELVAASSIIRPGVSGSGMKEEFIKRHR 586

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI--KEE 724
              EK    HP++  ++ ET GV++YQE V+++A   +G +L EADVLRR M  K   K+E
Sbjct: 587  YPEKRKEAHPILYKIMPETYGVMVYQEDVLKVANQFAGLTLGEADVLRRGMSGKYRSKKE 646

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
             +  +E+F       G  + +  +++  +  FA Y F K H+A+YAV SYQ+ ++K +YP
Sbjct: 647  FEAVEEKFYKNCRNKGFDEKLITDVWNQIKSFAGYAFAKGHSASYAVESYQSLYLKCYYP 706

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A +          + +  +AR+   +I  P +N      K+    IY     +K 
Sbjct: 707  LEFMTAVLN-NGGGFYSAEHYFHEARKQGAKICAPCINKSDHPNKLIGKTIYLGFGYLKN 765

Query: 845  VGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +   T + I+     +  F SL++F  R+    +    L  L+   A    G S+++LL 
Sbjct: 766  LELFTIKRILSERQLNGDFTSLDNFIDRL---TITIEQLTILIRIDAFKFTGKSKVELLW 822

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
                     +   K   N    +F     +   K  L K +V +      +E  +LGF  
Sbjct: 823  H-----SIFKLNAKRDYNSQSKLF----ISEHKKFNLPKLNV-SWIENAYDEMELLGF-- 870

Query: 964  SGHPLDVYKPILRKMGIKGYEES-VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSE 1022
               PL  Y  ++ +    G     +    G N+ +   +V+ +   T KG  +   TF +
Sbjct: 871  ---PLCDYFNLVNENTDNGILALKMKNYVGKNVLIYGSLVTTRYNNTSKGELMRLSTFID 927

Query: 1023 PAKE-YEANFF 1032
                 ++A  F
Sbjct: 928  KEGNYFDAVHF 938


>gi|3676693|gb|AAC62072.1| DNA polymerase [Treponema denticola]
          Length = 361

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 110/364 (30%), Positives = 182/364 (50%), Gaps = 17/364 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            FVHL VHS +SLL+GA S+  +  K     Q A+A+TD  N+F A+ F        I+P
Sbjct: 4   DFVHLHVHSDFSLLDGAASVKALAAKAEKLGQTALALTDHGNMFGAINFYNACKEKNIKP 63

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           IIGC+  +  +   +              ++LL     GY+ L+ L S+ Y  +      
Sbjct: 64  IIGCEFYVAPESRFEKKET--PGGKKYYHLILLAKNETGYRNLMVLCSKGYT-EGMYYKP 120

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
           RI    L +   EGLI L+   +G +         + AE  +  ++++FG +  ++ LQ 
Sbjct: 121 RIDDELLAQY-AEGLICLSACLAGELPVLLLNGEKEKAEAHVRKYREIFGAENYFIELQD 179

Query: 189 HRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           H   +  + S+ ++++A    +PLV TN+  ++ ++DY A D+LM +    + +  +R +
Sbjct: 180 HGLKEEKKASKLLIEMARKVGVPLVLTNDIHYVEQKDYVAQDILMCIGMKKLRTDTNRMQ 239

Query: 248 VT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               + Y K+  EM  +F + PEA+ NTV IA  C+  +    PILP +   E    +  
Sbjct: 240 FEGSEFYFKSGEEMAQLFPEYPEAILNTVRIAEMCNLEIPQPGPILPIYKIPEDFSSK-- 297

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E+ +R+ A   L+ R             + + RL++EL+++ +M F GYFLIV DFI W
Sbjct: 298 -EDYIRHLAEGSLKKRYP-------VITDEIKNRLNYELDIVIKMDFVGYFLIVWDFINW 349

Query: 367 AKKN 370
           AK N
Sbjct: 350 AKNN 353


>gi|89889523|ref|ZP_01201034.1| DNA polymerase III alpha subunit [Flavobacteria bacterium BBFL7]
 gi|89517796|gb|EAS20452.1| DNA  polymerase III alpha subunit [Flavobacteria bacterium BBFL7]
          Length = 1040

 Score =  327 bits (838), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 226/1037 (21%), Positives = 414/1037 (39%), Gaps = 114/1037 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  H+ YSL  G  +   +++    +    I +TD NN  + L F +      +  ++G 
Sbjct: 3    LNNHTYYSLRYGTFNELELIELALKNDVHTIVLTDINNTSACLNFMRLCAQHQLHGVLGI 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                                      V +    EG+Q L   +S  +L ++     +   
Sbjct: 63   DF----------------RNEHQQQYVGIARNNEGFQELNLFLSH-HLENKIPFPAQAP- 104

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
                      +I             + FN     EK        F +  Y+ +       
Sbjct: 105  ----AFNNASII-------------YPFNKVVELEKV------RFRESEYIGIS------ 135

Query: 194  RYRESQVVQLAYTHELPL----VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                + + +L +TH + +    V      F S+ D+ AH +L  +  + ++SQ    +  
Sbjct: 136  ---TTTLRKLPFTHYVKMLDKMVVLQTVSFRSKRDFNAHRLLRCIDLNILLSQLPESQQG 192

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                      ++    +    +            +            ++     ++ +  
Sbjct: 193  NASDQMTSLSLLKKAFEEYPIIIQNTTRLLEQCHVNFNFENAQLNANQQVFTTSKEADYL 252

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            +LR  A  G+E R                +R++ E+ ++ +  F  YFLI     ++A+ 
Sbjct: 253  KLRKLAYDGIEHRYGDIKDMT-----VVIERIEKEIGIVNKKGFVAYFLINWRICEYARS 307

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                   GRGSGA S+ AY L IT++DP+   L FERF+N  R S PDFDIDF  D R++
Sbjct: 308  KG-YFYVGRGSGANSILAYLLQITEVDPIELDLYFERFINDYRTSPPDFDIDFSWDDRED 366

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            + R++ N +  E VA + T+ + Q +A +R++G+   +P + +D L              
Sbjct: 367  ITRFIFNTF--ENVALLATYNTFQYRAVVRELGKVFGLPKADIDMLTTGRFQQD------ 418

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
                           D     +L+ S  ++G+  + S HA GI+I ++P+          
Sbjct: 419  -------------QLDQMHQLVLKYSHLVKGMPNYTSIHAGGILITEKPIHYYSATSLPP 465

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK------VDLSLIPF 603
            +    V  F+M   E AG+ KFD L  + L  ++ +++ +                    
Sbjct: 466  KGYRTVQ-FDMHIAEDAGIHKFDILAQRGLGKIRDTIEIIKYNQPDAIVANLHTDVKNFM 524

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--Y 661
             D E  ++++    +G F +ES  MR  L  +  +    ++A  S+ RPG   + ++  +
Sbjct: 525  QDPEINNMISQAKCIGCFYIESPAMRMLLSKLATNDYIGLVAASSVIRPGVAQSGMMREF 584

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R    EK    HP++  ++ ET G+++YQE V+++A   +   L+EADVLRR M  K 
Sbjct: 585  ILRTRYPEKRKEAHPIMQEIMPETYGIMVYQEDVIKVAHYYAKLDLAEADVLRRGMSGKY 644

Query: 722  KEEMDKQK--ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
            +   + QK  +++       G        I+  +  FA Y F K H+A+YAV SYQ+ ++
Sbjct: 645  RSREEFQKVEQKYFQNCIDIGHDPEQTQEIWNQIKSFAGYAFAKGHSASYAVESYQSLYL 704

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSL 839
            K ++P+E++ A++        + + +  +A++    I  P VN   +   +    IY   
Sbjct: 705  KKYFPLEYMVATLN-NGGGFYRPELYVHEAKKCGAIIESPCVNHSDIANIIKGTSIYLGY 763

Query: 840  AAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            + +K +   T   ++EA   D  F SLEDF  RV    ++   L  L+   A    G  R
Sbjct: 764  SYLKELEKKTMVRLIEARQHDGLFKSLEDFIDRV---LISIDQLALLIRIDAFRFTGKDR 820

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ-R 957
             +LL        + +  +  +      +F         + T+ +     + +    EQ  
Sbjct: 821  YELLWQ-----AHFKLDKSPQKYIQNKLF----NPEYKETTIPQLH--TTVLEMAYEQIE 869

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            +LGF    H  D+           G  + +       I +   VV+ +   T KG R+ +
Sbjct: 870  LLGFPLCSH-FDLLLE--PPQNNYGLAD-MKAHHNKMILMYGYVVNIKTTHTAKGKRMQF 925

Query: 1018 VTFSEPAKE-YEANFFP 1033
             TF +   + ++   FP
Sbjct: 926  GTFLDINGDFFDTVMFP 942


>gi|258539578|ref|YP_003174077.1| DNA polymerase III subunit alpha [Lactobacillus rhamnosus Lc 705]
 gi|257151254|emb|CAR90226.1| DNA polymerase III, alpha subunit [Lactobacillus rhamnosus Lc 705]
          Length = 636

 Score =  327 bits (837), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 211/665 (31%), Positives = 322/665 (48%), Gaps = 45/665 (6%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +F  LQVHS+Y+LL   L+L +++         A+A+TDTN ++  +EF ++A AAG++P
Sbjct: 2   TFTQLQVHSNYTLLHSPLALPDLIQAAKNRGYSAVALTDTNVVYGLVEFYRQAKAAGLKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           ++G Q++I                     ++++     GY +L++L +++ L  Q     
Sbjct: 62  LLGMQIEIADA-----------------KLLVIAENNTGYHQLLKLSTQIMLAQQP---- 100

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            +  + L  +   GL  +T     P   A        A+  L T K      LY+ +   
Sbjct: 101 -LAFADLLPLN--GLAAVT-LPDSPFGVAVSERHEDQAQTFLTTLKAKQPSSLYIGV--- 153

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              + + E  +   A T +LPL+A  N L+    D     V++A+   + ++ +D     
Sbjct: 154 --DEEHLEGTLPAFADTVKLPLLALGNVLYRDPTDAFTQKVMVAIETGSQLNFRDPVLTD 211

Query: 250 PDHYLKNRSEMVSI---FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                       +     + L  A+  T  IA R    +    P LP +   +    +  
Sbjct: 212 AGPAWLKPPTDAAKPFVQAGLQAAVTQTEAIAARADVTIDFKQPQLPHYQTPDQTPSK-- 269

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + L   A +GL  R    +I        Y+ RL +EL VI  M F+ YFL+V D + +
Sbjct: 270 --DYLTKLAESGLAKRFHGQSI-----PPAYQDRLQYELRVIIEMGFADYFLVVWDVMNY 322

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A K NI  G GRGS AGS+ +YAL IT++DP+ ++LLFERFLNP R  MPD D+D   +R
Sbjct: 323 AHKVNIMPGAGRGSAAGSLVSYALAITEVDPIEYNLLFERFLNPARAQMPDIDLDIPDNR 382

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R E+I+YV +KYG   +AQIITFG+  AK A+RDV R   +   + +   K IPN     
Sbjct: 383 RGELIQYVHDKYGKNHMAQIITFGTFGAKQAIRDVARVFGLSQFESNTWSKAIPNLFHID 442

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
           +   A       +      P    L + +  LEGL RH STHAAGIV+ + PL+  V + 
Sbjct: 443 LK-TAYEQSQPLKNLVADSPKNRMLFQTALALEGLPRHYSTHAAGIVLSEEPLTDTVALQ 501

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                 L  TQ     +E  GL+K DFLGLK L +L  +  F+ +  G   D   IP DD
Sbjct: 502 -PSGDGLEQTQVPKDDVEALGLLKMDFLGLKNLNILAAASHFVTRDTGKPFDPKAIPLDD 560

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T  L     T G+FQ ESSG++  L  ++P   ED++A+ +LYRPG    ++     K
Sbjct: 561 QPTLALFARGDTNGVFQFESSGIKNVLRKLRPTAFEDVVAVNALYRPGRWRTLIPSLRAK 620

Query: 666 NGKEK 670
             + +
Sbjct: 621 TVRSQ 625


>gi|172062460|ref|YP_001810111.1| DNA-directed DNA polymerase [Burkholderia ambifaria MC40-6]
 gi|171994977|gb|ACB65895.1| DNA-directed DNA polymerase [Burkholderia ambifaria MC40-6]
          Length = 641

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 161/612 (26%), Positives = 280/612 (45%), Gaps = 34/612 (5%)

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            ++Y+  KYG +R A      + + ++ALR+ G+AL +  + VDR+ K      +    LQ
Sbjct: 1    MQYIYRKYGRDRAALTAAVTTYRPRSALREAGKALGVDQAIVDRVAKQHHWFDSRADLLQ 60

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
              A+           P   +    + +L G  R  S H+ G VI    L++LVP+     
Sbjct: 61   RFAE----AGLDPEAPLNQQWAAFAAQLLGYPRPLSQHSGGFVISRGKLTRLVPVENAAM 116

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETY 609
             D  + Q++   IE  G++K D L L  L++++++LD +  +RG   +L  IP +D  T+
Sbjct: 117  EDRSIIQWDKDDIEALGILKIDVLALGMLSMVRRALDMISEKRGETFELQDIPAEDKATH 176

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK- 668
             +L    ++G+FQ+ES      L  ++P C  D++  V++ RPGP+   +V+   +  + 
Sbjct: 177  EMLCDGDSMGVFQVESRAQMSMLPRLRPQCFYDLVIEVAIVRPGPVQGGMVHPFLRRRQG 236

Query: 669  -EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IKEEMD 726
             E +      ++  L  T GV I+QEQVMQ+A L +G+S  EAD LRRAM     K  ++
Sbjct: 237  LEPVTFPSEGMEKALARTLGVPIFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKRKGGLE 296

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
               ER +SG  + G  +  A +IF  +  F +YGF +SHAA++A++ Y +AW++ H P  
Sbjct: 297  PYHERLVSGMLERGYDREFAESIFAQIKGFGEYGFPESHAASFALLVYSSAWLRRHEPAV 356

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAI 842
            FLAA +  +        +  QDAR+  ++++P  VN    D  +        +    + +
Sbjct: 357  FLAALLNSQPMGFYTPSQLLQDARRRGVEVLPVDVNVSTWDSAIEGPATSAPVRLGFSLL 416

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQL 901
            +G+    A  I  A A +PF  + D   R    +L+R  L++L  A AL    G +R   
Sbjct: 417  RGMRQDVAGRIELARAARPFVDIADLARRA---RLDRHDLQALARANALRSLAGGNRR-- 471

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
                      A            ++    +   +    +      +       + R +GF
Sbjct: 472  ----------AALWLAAAAVPDRDLLRGTERDDA----VPALPRASEGHEIVTDYRAMGF 517

Query: 962  YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
                HPL + +  L    ++  E+      G   R   +V  +Q+  T  G  + ++T  
Sbjct: 518  TLGRHPLALLRERLALDRLQSAEQLATLRSGQLARACGLVTVRQRPGTANG--VLFMTLE 575

Query: 1022 EPAKEYEANFFP 1033
            +         +P
Sbjct: 576  DETGHVNVILWP 587


>gi|305665445|ref|YP_003861732.1| DNA polymerase III subunit alpha [Maribacter sp. HTCC2170]
 gi|88710200|gb|EAR02432.1| DNA polymerase III alpha subunit [Maribacter sp. HTCC2170]
          Length = 983

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 232/1016 (22%), Positives = 406/1016 (39%), Gaps = 118/1016 (11%)

Query: 36   IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
               +    + +TD NN  + L F ++A    ++PI+G                 +     
Sbjct: 2    AKENHVTQLVLTDINNTSAGLNFVRRAPEYDVRPILGIDF--------------RNGVDQ 47

Query: 96   VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG-----G 150
                V +    EGY  L   +S             +          E L  +        
Sbjct: 48   CY--VGIAKNNEGYLELNNFLSE-----------HLHKE-------EDLPAIAPRLQHTC 87

Query: 151  SSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELP 210
               P ++    N               F D  Y+ +         R     +L+   E  
Sbjct: 88   IIYPFEKVLLNNQVS------------FADNEYIGIS----ISDLRRLPFSRLS-KLEDK 130

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
            LV      F ++ D+ AH +L A+  + ++S+ D+     +       + ++        
Sbjct: 131  LVVQQPVTFRTKGDFNAHRLLRAIDKNMLLSKLDKTEEAKEDEKMFPIQNLAAAFSEYSF 190

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
            +    E       I    +        K  +  ++E+E  L      GL  R   G    
Sbjct: 191  ILENTEKLMNACSIHFDFSKERQPQNLKTYNKTKEEDETMLEGLCQKGLPYRYPNGG--- 247

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                    QRL  EL +I  M F  YFLI  D + +A+K       GRGSGA S+ AY L
Sbjct: 248  ----DGIIQRLQKELKLIKGMGFVSYFLINWDIVSYAQKQGFFY-VGRGSGANSIVAYLL 302

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
             ITD+DP+   L FERF+N  R + PDFDIDF    R ++ +Y+ +++  E VA + T+ 
Sbjct: 303  RITDVDPMELDLYFERFINLYRANPPDFDIDFSHRDRPKITQYIFDRF--EHVALLGTYV 360

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            + + K  +R++G+   +P S++D L             +  + + S+             
Sbjct: 361  TFKEKGVVRELGKVFGLPKSEIDFLS-------GGRYDISRLDEVSQL------------ 401

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            +++  + ++ +  + S HA GI+I +RPL      +         T F+M   E  GL K
Sbjct: 402  VVKYGRLIKNMPNYLSIHAGGILISERPLHYFSATHLPP-KGFATTMFDMVIAEDVGLYK 460

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKV------DLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            FD LG + L  +++++D L                    +D    +L+ T   +G F +E
Sbjct: 461  FDILGQRGLAKIKETMDILEHTRPDDFSKIDIHNINKFKEDPNVNNLIKTAQCMGCFYVE 520

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI---HPLIDPM 681
            S  MR  L+ ++ D    ++A  S+ RPG   + ++       +         HP++  +
Sbjct: 521  SPAMRMLLKKLEVDNYLGLVAASSIIRPGVSKSGMMREYILRHRNPGRDKEKGHPVMLDI 580

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ--KERFISGASKN 739
            + ET GV++YQE V+++A   +G  L EADVLRR M  K +   + Q  +E+FI    K 
Sbjct: 581  MPETYGVMVYQEDVIKVAHHFAGLDLGEADVLRRGMSGKFRSREEFQKVREKFIENCRKK 640

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G    I   ++  +A FA Y F K H+A+YAV SYQT +++ +YP+E++ A +       
Sbjct: 641  GEDDKIIFEVWGQIASFAGYAFAKGHSASYAVESYQTLFLRAYYPLEYMVAVLN-NGGGF 699

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA- 858
             + + +  +AR     I  P VN       +    I+     ++ +    A  I++    
Sbjct: 700  YRPEFYVHEARMLGATIHSPCVNRSLNRNVIYGKGIFLGFGYLRELEHRVAERILKDRKV 759

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
            +  + SLEDF  RV    ++      L+   A    G ++ QLL       K   ++ KN
Sbjct: 760  NGAYGSLEDFLDRV---FISIEQASILIRIDAFRFTGVNKHQLLW------KAHLFLNKN 810

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
                H  +F            + +    +  + F     +LGF     P ++     +  
Sbjct: 811  VKIDHPKLF----PPKHQDFKIPQLYTTDLEMAFTQ-LELLGFCLCS-PFELLVEPPKNN 864

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY-EANFFP 1033
                 ++    +   +I +   +V+ ++  T  G ++ + TF +   E  +   FP
Sbjct: 865  RCV--KDLERHLN-RHIDIYGYLVTVKKTSTHNGKQMYFATFVDQQGEVFDTVLFP 917


>gi|153873151|ref|ZP_02001826.1| DNA polymerase III, alpha subunit [Beggiatoa sp. PS]
 gi|152070384|gb|EDN68175.1| DNA polymerase III, alpha subunit [Beggiatoa sp. PS]
          Length = 537

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 146/399 (36%), Positives = 218/399 (54%), Gaps = 17/399 (4%)

Query: 647  VSLYRPGPIDNIVVYNNRKNGK-EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            V+LYRPGP+ + +V +  +    EK    HP + P+LK T GVI+YQEQVMQIAQ+L+GY
Sbjct: 4    VALYRPGPLQSGMVDDFIERKHGEKFEYPHPDLAPILKSTYGVIVYQEQVMQIAQVLAGY 63

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
            +L  AD+LRRAMGKK  EEM KQ+  F  GA++ G+ +  +  IF+L+ KFA YGFN SH
Sbjct: 64   TLGGADILRRAMGKKKPEEMKKQRTVFTKGATERGVDEEKSTYIFDLMEKFAAYGFNLSH 123

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-RQFNIQIMPPSVNTP 824
            +AAYA+++YQTAW+K HYP  F+AA ++ +MDN +K+  F ++      ++++ P++N  
Sbjct: 124  SAAYALLAYQTAWLKAHYPAAFMAAVLSADMDNSDKVVPFIEECRHAMKLKVLSPNINAS 183

Query: 825  CVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRR 880
               F V       I Y L AIKG G      ++E       F  L D C RV+ +K++RR
Sbjct: 184  HYKFTVIAGDPRAIRYGLGAIKGAGEAALEGMIEERQSKGKFKDLFDLCRRVNLRKVSRR 243

Query: 881  VLESLVFAGALDCFGY-------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            VLE L+ +GA D  G        +R  ++ SLDN  K A+     + +   +IFA+   T
Sbjct: 244  VLEPLIKSGAFDELGPEPTKIGINRAVMMASLDNAIKEAERYSSEKASGQNDIFANSTQT 303

Query: 934  FSDKITLE---KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
             S +            N + +   E+  LGFY SGHP+  Y+  L ++          T 
Sbjct: 304  KSPEKAPPFVQPVKPWNQTEQLNGEKESLGFYLSGHPVKPYETELAQLNCVRLAHIKPTE 363

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            +   IR    V   +    ++G  + ++T  +     E 
Sbjct: 364  KKQTIRAGGWVTEVRTTYNKRGK-MAFITLDDSTARLEI 401


>gi|319954732|ref|YP_004165999.1| DNA polymerase iii, alpha subunit [Cellulophaga algicola DSM 14237]
 gi|319423392|gb|ADV50501.1| DNA polymerase III, alpha subunit [Cellulophaga algicola DSM 14237]
          Length = 995

 Score =  324 bits (829), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 238/1033 (23%), Positives = 439/1033 (42%), Gaps = 111/1033 (10%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  HS YSL  G  S   +L    A+    +A+TD NN  + + F +K+   GI+PIIG 
Sbjct: 3    LNCHSYYSLRFGTFSEIELLKMGQANHIATLALTDINNTSACMNFVRKSKEYGIKPIIGI 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                            +     +   V +    EG++ L   +S             I L
Sbjct: 63   DF--------------RNGAEQLY--VGIAKNNEGFRELNAFLS-------FHSHKNIKL 99

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL-FGDRLYVNLQRHRGY 192
                              +   + A+     +     +L  +K+ F    Y+ +      
Sbjct: 100  ---------------PPIAPVFEHAYIIYPFEN----VLQLEKINFEAHEYIGIS----V 136

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
            +  R     +   ++   LV      F ++ D+ AH +L A+A++T++S+  +       
Sbjct: 137  ENLRRLPFSKY-KSYTDKLVIQQPVTFRNKRDFNAHRLLRAIANNTLLSKLQQTEEGRLS 195

Query: 253  YLK-NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
                ++ +++  F D P+ + NT  +  +C+      A  + +  +      ++E+ N L
Sbjct: 196  EQMLSKEKLLEAFQDFPQLVTNTKTLMAQCNVGFGFGASRVSQNQQVFG-TSKEEDFNYL 254

Query: 312  RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            +     GL  R                +RL  EL  I +M F  YFLI  D +++A    
Sbjct: 255  QQLCEDGLPKRYP-------TRTDAVSKRLAVELETIKKMDFVSYFLINHDIVKYANSKG 307

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              +  GRGSGA S+ AY + ITD+DP+   L FERF+NP R+S PDFDIDF    R++V 
Sbjct: 308  -YLHVGRGSGANSIVAYIIGITDVDPIELDLYFERFINPYRVSPPDFDIDFSWKDREDVT 366

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             Y+  ++ +   A + T+ + + +A +R++G+   +P  ++D+LCK   ++         
Sbjct: 367  AYIFRRFKN--TALLATYNTFKYRAVVRELGKVFGLPKEEIDKLCKGHFSE--------- 415

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
                         D     +L+ S  ++    + S H+AGI+I D+P+            
Sbjct: 416  ----------NNLDDMGKLVLKYSALIKDFPNYLSVHSAGILILDQPIHYYSATDLPP-K 464

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPF----DDH 606
                 QF+M   E AG+ KFD LG + L  ++++++ +   R    ++ +       +D 
Sbjct: 465  GFATVQFDMIIAEDAGIFKFDILGQRGLAKIKEAIEIIKVNRPEVPEIDITQIETFKNDA 524

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNR 664
               +LL+    +G + +ES  MR  +  ++ +    ++A  S+ RPG   + +   Y  R
Sbjct: 525  NINNLLSRGKAIGAYYVESPAMRGLMCKLKVNDYLGLVAASSVIRPGVSSSGMKNEYIRR 584

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                E+    + ++  ++ ET G+++YQE V+++A   +G  L EADVLRR M  K +  
Sbjct: 585  HREPERRKEANAILAQIMPETYGIMVYQEDVLKVANQFAGLDLGEADVLRRGMSGKFRSR 644

Query: 725  MDK--QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             +    +E+F S     G    +   +++ +A FA Y F K H+A+YAV SYQ+ ++K +
Sbjct: 645  AEFTRVEEKFRSNCKAKGYPDALTTEVWDQIASFAGYAFAKGHSASYAVESYQSMYLKCY 704

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
            YP+EF+ A +          + +  +AR +  QI  P +N       +    IY     +
Sbjct: 705  YPLEFMVAVLN-NGGGFYSTEHYIHEARMWGAQIHAPCINLSDHHNTIKGVAIYLGFGYL 763

Query: 843  KGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            K +     +  +        F SL+DF  RV    ++   L  L+  GA    G  + +L
Sbjct: 764  KNLENLVVQRFLTERQLYGAFKSLDDFIDRV---IISIEQLAILIRIGAFKFTGLEKNEL 820

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF 961
                  I K     ++   + + ++F         +  L K    +      ++  +LGF
Sbjct: 821  HWQ--GIFKINALKKR---SGNPSLF----KPKHKQFELPKL-AHSWVEEAYDQIELLGF 870

Query: 962  YFSGHPLDVYKPILRKMGIKGY-EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
                 PL  Y  ++ +  +     + +       + L  ++V+ +   T+    +   TF
Sbjct: 871  -----PLYSYFDLISEEILSDAKAQDMQHHHNKELLLYGILVNTRFNTTKNNKNMRLSTF 925

Query: 1021 SEPAKE-YEANFF 1032
             +   + ++   F
Sbjct: 926  VDQEGDYFDVVHF 938


>gi|220979967|emb|CAP72159.1| Putative DNA polymerase III alpha subunit [Escherichia coli LF82]
          Length = 1168

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 269/964 (27%), Positives = 433/964 (44%), Gaps = 96/964 (9%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L V + +SL E AL   N +         A+   D+ N+ S +   + A    +  I G 
Sbjct: 4   LMVRTDFSLGESALKAENAVKIAREAGYTAVISADSMNIASVIPLQRAA-GDDMAVICGV 62

Query: 74  QLDIDMQDNLKMTNQ---------GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +L+I      +   +                  S   L+   +GY+ + EL++     +Q
Sbjct: 63  KLNIVDDPTYEHRAKLAKESMRCMESLERGRNYSFTALIKNEQGYRDICELMTAANTREQ 122

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                R+ L  L     +G I+L    +  I   F  N      K + T     G D  Y
Sbjct: 123 FYFVPRLSLEQLVSTYAKGNIIL---LTSDIGSVFQRNDFA---KIISTLITAGGKDNFY 176

Query: 184 VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
             +  H   +      + +++A   ++  VA   + + S +D +  D+   V ++  + Q
Sbjct: 177 SVVYPHPTPFYDQINVRAMKVASALKIEPVAFYPAYYESIDDADIKDIAHMVTNNIKIDQ 236

Query: 243 KDRPRVTPDHY-----LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             R R+           ++  E +  FS   +        +     I+          + 
Sbjct: 237 PHRLRIPHQRDNAINGRRHLLEALKAFSVRMDVPVTAAMASTTQDSIIDACTWRW-HELP 295

Query: 298 KECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                +  +E   L   AVAGL  R      G        + Y +RL +E++ + R+ F 
Sbjct: 296 PALPKMADDEPATLMKLAVAGLRKRLTTKEFGYTPPASENRVYVERLKYEMDTLTRLGFC 355

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
           GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+R  LLFERF+NP+R+ 
Sbjct: 356 GYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFINPERLD 415

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +ALRD  R   +  S    
Sbjct: 416 LPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARIYGV-ESADMA 474

Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           + K + N     + L+ + +  +                 + KL+ L R    HAAG+++
Sbjct: 475 VSKELKNVEDDSLPLEELRE--QLASLDKYATKYPDAFNAACKLQSLMRGFGRHAAGMIV 532

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RG 593
              PL++  P+ R    D     F+ ++ E  GLIK D LGL TL LL  +  ++ +  G
Sbjct: 533 AGVPLTERTPVERR--GDARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRYIKESTG 590

Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ----PDCIEDIIALVSL 649
             ++L  IP DD +         T G+FQLES  MR+ L+ +     P   + ++A  +L
Sbjct: 591 EDINLDAIPLDDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTVVATTAL 650

Query: 650 YRPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
           +RPGPI + ++ +     K      SIHP ++ + +ET GV++YQEQ+MQ +++L+G+S+
Sbjct: 651 FRPGPIQSGMLDDYVSVAKGFMAPHSIHPRLEEVTRETNGVLLYQEQIMQSSRVLAGFSM 710

Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGAS------------------------------ 737
           +EAD LR A+GKK  ++M      F+  A                               
Sbjct: 711 AEADALRSAIGKKNMDKMKAIGSDFVERAQAGWVTLSLKNGGTVEVHKHAKLDCSDGKRR 770

Query: 738 ------------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
                             + G+SK  A  I++   KF  Y FNKSH+ AY++ISYQ+ W+
Sbjct: 771 SYSEAISDGIDYVEIVSEQEGLSKEKAQEIWDAFEKFGGYAFNKSHSVAYSLISYQSMWL 830

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-----GDNR 834
           KTHYP EF AA++T  +   +K +   +DA  + I+++PP VN      ++     G   
Sbjct: 831 KTHYPAEFFAAALT--ILGEDKHQGLVKDALTYGIRVLPPDVNVSSNRIEIRTLEDGSQA 888

Query: 835 IYYSLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
           +Y   +A+KG      + IM A       F+S+  F   V+ +  N RV ESL   GA  
Sbjct: 889 LYAPFSAVKGCSENGCQAIMRAREKVGGKFESVAQFDEAVEKRACNSRVRESLHKVGAFA 948

Query: 893 CFGY 896
               
Sbjct: 949 SIEP 952


>gi|213582268|ref|ZP_03364094.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 520

 Score =  321 bits (822), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 213/491 (43%), Positives = 301/491 (61%), Gaps = 12/491 (2%)

Query: 107 EGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
            GYQ L  L+S+ Y    G     I   WL E+  EGLI+L+GG  G + R     +  +
Sbjct: 1   TGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQAL 59

Query: 167 AEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDY 225
            E+ +  ++  F DR ++ L R    D        V+LA    LP+VATN+  FL  +D+
Sbjct: 60  VEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDF 119

Query: 226 EAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
           +AH++ +A+     +    RPR  +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  
Sbjct: 120 DAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVT 179

Query: 285 LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRL 341
           +++           +        E+ L  K+  GLE RLA        +     +Y +RL
Sbjct: 180 VRLGEYF-----LPQFPTGDMTTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERL 234

Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
           D EL VI +M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F 
Sbjct: 235 DIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFD 294

Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
           LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDV
Sbjct: 295 LLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDV 354

Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
           GR L  PY  VDR+ KL+P DP   +  +A   + +  E   AD  V  L+++++KLEG+
Sbjct: 355 GRVLGHPYGFVDRISKLVPPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGV 413

Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
            R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT+
Sbjct: 414 TRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTI 473

Query: 582 LQKSLDFLAQR 592
           +  +L+ + +R
Sbjct: 474 INWALEMINKR 484


>gi|213418464|ref|ZP_03351530.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 391

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 158/407 (38%), Positives = 228/407 (56%), Gaps = 21/407 (5%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++G      ++ K A+   PA+AITD  NL   ++F      AGI+PI+G   ++  + 
Sbjct: 1   MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNE- 59

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                         +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  
Sbjct: 60  ---------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-K 109

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQV 200
           EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R    D        
Sbjct: 110 EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAA 169

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSE 259
           V+LA    LP+VATN+  FL  +D++AH++ +A+     +    RPR  +P  Y+++  E
Sbjct: 170 VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 229

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +FSD+PEALENTVEIA+RC+  +++       +   +        E+ L  K+  GL
Sbjct: 230 MCELFSDIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPTGDMTTEDYLVKKSKEGL 284

Query: 320 EVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
           E RLA        +     +Y +RLD EL VI +M F GYFLIV +FIQW+K N +PVGP
Sbjct: 285 EERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 344

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           GRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDFD+DFC
Sbjct: 345 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFC 391


>gi|221046767|pdb|3F2B|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
            With Dna, Dgtp, Mg And Zn
 gi|221046770|pdb|3F2C|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
            With Dna, Dgtp And Mn
 gi|221046775|pdb|3F2D|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
            With Dna, Dgtp, Mn And Zn
          Length = 1041

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 168/988 (17%), Positives = 324/988 (32%), Gaps = 182/988 (18%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  S ++   S+  ++++      PAIA+TD   + S  E    A   G++ I 
Sbjct: 117  VELHLHTPMSQMDAVTSVTKLIEQAKKWGHPAIAVTDHAVVQSFPEAYSAAKKHGMKVIY 176

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTV---PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            G + +I         N+      +      + LL     G + L +LVS  ++     + 
Sbjct: 177  GLEANIVDDGVPIAYNETHRRLGSGSGPFHVTLLAQNETGLKNLFKLVSLSHIQ-YFHRV 235

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY--- 183
             RI  S L +   +GL++ +G   G +       + +  E     +   ++    +Y   
Sbjct: 236  PRIPRSVLVK-HRDGLLVGSGCDKGELFDNLIQKAPEEVEDIARFYDFLEVHPPDVYKPL 294

Query: 184  VNLQRHRGYDRYR---ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
            +    +   +         +V L    ++P+VAT N  +L+ ED     +L+        
Sbjct: 295  IE-MDYVKDEEMIKNIIRSIVALGEKLDIPVVATGNVHYLNPEDKIYRKILIHSQGGA-N 352

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                           N       F    +A E  V+  ++ + ++    PI         
Sbjct: 353  PLNRHELPDVYFRTTNEMLDCFSFLGPEKAKEIVVDNTQKIASLIGDVKPIKDELYTPRI 412

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +      + E+R  +    +              +   +RL+ EL  I    F+  +LI 
Sbjct: 413  EG----ADEEIREMSYRRAKEIYGDPL------PKLVEERLEKELKSIIGHGFAVIYLIS 462

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 463  HKLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPNCKHSEFFNDGSVGS 521

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 522  GFDLPDKNCPRCGTKYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 581

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A           Y  V                      +   R
Sbjct: 582  EDNVYRAGTIGTVADKTA-----------YGFVKAYAS---------------DHNLELR 615

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
             A         +  ++    G+ R    H  GI+       +    P+         +  
Sbjct: 616  GA--------EIDRLAAGCTGVKRTTGQHPGGIIVVPDYMEIYDFTPIQYPADDTSSEWR 667

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY----- 609
             T F+   I    L+K D LG    T+++   D          +     D    +     
Sbjct: 668  TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG--IDPKTIPTDDPDVMGIFSSTEP 724

Query: 610  ------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
                   ++   GT+GI +  +  +RQ LE  +P    +++ +  L              
Sbjct: 725  LGVTPEQIMCNVGTIGIPEFGTRFVRQMLEETRPKTFSELVQISGLSHG-------TDVW 777

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
              N +E I +    +  ++     +++Y         +  G   S A  +  ++ K    
Sbjct: 778  LGNAQELIQNGTCTLSEVIGCRDDIMVYL--------IYRGLEPSLAFKIMESVRKGKGL 829

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
              +     F +   K+ + +    +  ++      Y F K+HAAAY +++ + A+ K H+
Sbjct: 830  TPE-----FEAEMRKHDVPEWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHH 879

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQ---------------------------------DAR 810
            P+ + A+  T+  ++ +                                        +  
Sbjct: 880  PLLYYASYFTVRAEDFDLDAMIKGSAAIRKRIEEINAKGIQATAKEKSLLTVLEVALEMC 939

Query: 811  QFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
            +         +      +F +  N +     AI G+GT  A+ I+ A  +  F S ED  
Sbjct: 940  ERGFSFKNIDLYRSQATEFVIDGNSLIPPFNAIPGLGTNVAQAIVRAREEGEFLSKEDLQ 999

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYS 897
             R    KL++ +LE L   G LD     
Sbjct: 1000 QR---GKLSKTLLEYLESRGCLDSLPDH 1024


>gi|225389824|ref|ZP_03759548.1| hypothetical protein CLOSTASPAR_03572 [Clostridium asparagiforme DSM
            15981]
 gi|225044134|gb|EEG54380.1| hypothetical protein CLOSTASPAR_03572 [Clostridium asparagiforme DSM
            15981]
          Length = 561

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 155/432 (35%), Positives = 233/432 (53%), Gaps = 20/432 (4%)

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            QLES GM+  ++ ++P  +EDIIA +SLYRPGP+D I  Y   KN +  I    P ++P+
Sbjct: 1    QLESGGMKSFMKELKPGSLEDIIAGISLYRPGPMDFIPKYIKGKNDRSAITYDCPQMEPI 60

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG------ 735
            L  T G I+YQEQVMQI + L+GY++  +D++RRAM KK    M+K+++ F+ G      
Sbjct: 61   LGPTYGCIVYQEQVMQIVRDLAGYTMGRSDLVRRAMSKKKASVMEKERQNFVYGNEEEGV 120

Query: 736  --ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
                 NG+ +  A +I++ +  FA Y FNKSHAAAYAV+SYQTA++K +YP+EF+AA M+
Sbjct: 121  KGCVNNGLEERTANHIYDEMTDFAKYAFNKSHAAAYAVVSYQTAYLKYYYPLEFMAALMS 180

Query: 794  LEMDNVEKIKKFCQDARQ-FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
              MDNV K  ++    RQ   I I+PP +N     F V  N I Y L+AIK VG +    
Sbjct: 181  SVMDNVTKFSEYILTCRQIMGIPILPPDINEGESGFSVSGNAIRYGLSAIKSVGKSVVDT 240

Query: 853  IME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
            I+    A  PF S+EDF  R+  K++N+R LE+ + +GALD    +R Q +  +  + + 
Sbjct: 241  IIADREAGGPFRSMEDFVGRMTHKEVNKRTLENFIKSGALDTLPGTRKQKIAVMPVLLES 300

Query: 912  AQWVEKNRTNKHENIF--AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                 K+      ++F  A E+   + +IT  +            E+ +LG Y SGHPL+
Sbjct: 301  KARERKSVIEGQLSLFDIAGEEERDNFQITFPEVGEYTKEELLVFEKEILGVYISGHPLE 360

Query: 970  VYKPILRKMGIKGYEES--------VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
             YK + +K       +              G  + +  +V  K  K TR    + ++T  
Sbjct: 361  DYKDVWQKTVTANASDFIVDEEAGGARVTDGARVVIGGLVAGKTVKTTRTNQLMAFITLE 420

Query: 1022 EPAKEYEANFFP 1033
            +     E   FP
Sbjct: 421  DLMGSVEVIIFP 432


>gi|298487242|ref|ZP_07005291.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
 gi|298158266|gb|EFH99337.1| DNA polymerase III alpha subunit [Pseudomonas savastanoi pv.
            savastanoi NCPPB 3335]
          Length = 574

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 139/525 (26%), Positives = 235/525 (44%), Gaps = 35/525 (6%)

Query: 521  LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
              RH S H  G VI + PL  LVP+     +D  + Q++   ++  GL+K D L L  L+
Sbjct: 17   FPRHLSQHPGGFVISEHPLETLVPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLS 76

Query: 581  LLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
             L+++ D +   RG +  L+ +P DD +TY +++   T+G+FQ+ES      L  ++P+ 
Sbjct: 77   ALRRTFDLVHLHRGKRWTLADLPGDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEK 136

Query: 640  IEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
              D++  V++ RPGPI   +V+    R+N +E I    P +  + + T GV ++QEQVM+
Sbjct: 137  FYDLVIEVAIVRPGPIQGDMVHPYLRRRNKEEAITYP-PKLKSVFERTLGVPLFQEQVME 195

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKF 756
            +A + + Y+  EAD LRRAM    +    +  +ER  +G  KNG     A  IFE +  F
Sbjct: 196  VAIIAADYTPGEADELRRAMAAWKRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGF 255

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
              YGF +SHAA++A+++Y + W+K H P  F  A +           +  QDAR+ +I+I
Sbjct: 256  GSYGFPESHAASFALLTYASCWLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEI 315

Query: 817  MPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
             P  V     D  +          +  I   L  ++G     A  I  A A +PF    D
Sbjct: 316  RPVDVRYSDWDCSLEPLDHPDRTRNLAIRLGLRMVRGFREEDALRIEVARAKRPFVDATD 375

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
               R +   L+ R  E+L  +GAL      R +    +  +                 +F
Sbjct: 376  LTLRAE---LDSRAAEALADSGALGGLIGHRHRARWEVAGV------------EAQRPLF 420

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                   +  I      +   +     +   LG     HPL + +  L     +  ++ +
Sbjct: 421  DDLPSEETQVI----LPLPTVAEDLVADYTTLGTTLGPHPLALLRRQLAAKRFRSSQDLL 476

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                   + +A +V+ +Q+  T  G  + +VT  +         +
Sbjct: 477  HLENDRTLSVAGLVIGRQRPGTASG--VTFVTLEDEFGMVNIVVW 519


>gi|323650995|ref|YP_004243638.1| putative DNA polymerase [Bacillus subtilis subsp. natto]
 gi|323461635|dbj|BAJ77051.1| putative DNA polymerase [Bacillus subtilis subsp. natto]
          Length = 1280

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 180/972 (18%), Positives = 359/972 (36%), Gaps = 88/972 (9%)

Query: 12  VHLQV-HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA----- 65
            H     S++ L +       ++D         + ITD   L S ++  +          
Sbjct: 22  THSHTDASNFRLRDAINKPEELIDYCHEIGLSGVVITDHETLSSHVKAHKYVEENKERLG 81

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
             +   G ++ +  + +  M  +      +    +L+  + +GY+ L +L S+ +     
Sbjct: 82  DFKLGFGNEIYLVDKADT-MEKKSLNQKISFHHFILIAKSQKGYEGLKKLSSKAWYNSFF 140

Query: 126 KQ---SVRICLSWL----QEIGTEGLIMLTGGSSGPIDRAFFFNSSQ-------VAEKRL 171
            +    V      L    QE   E +I  T    G + ++                   +
Sbjct: 141 YRGMERVPTYKDELMSLMQEYQGE-IIACTACVGGELPQSLIAYHDDPTPENKKRVHDLI 199

Query: 172 LTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
           +  K +FG+ LY  LQ  +  D+      +++++  + +  + + ++ +L+++   AH +
Sbjct: 200 VWLKGVFGEDLYFELQPSKNRDQLVANEMMLKVSEAYNVKCIVSTDAHYLNKKYAPAHKI 259

Query: 231 LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV--- 287
            +  +       +         Y +          D+     N +          Q    
Sbjct: 260 YLTASEGEREVDEFYATTYVMGYEELLEYFDEELLDVLVDNTNEIRSKLGSITFAQETKV 319

Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ-------GAIAKGYHAQDYRQR 340
               +P++   +       E   +R  A +  ++               K    ++   R
Sbjct: 320 PKAHIPKYEMNQLFVPHYMEYQYIRKYAESRYDIDRYYLHLIAEGMVAKKQELNKENLSR 379

Query: 341 LDFE----LNVIARMK--FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
           ++ E     ++  ++    S YF++  D +         VG  RGS       Y L I  
Sbjct: 380 INTELDELYHITEKLGQPLSSYFVLSKDVVDL-MWQVSLVGVSRGSACCFYLNYLLDIVQ 438

Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
           ++P++F+L   RFL+ +R  +PD D+D    +R E+I+  +  YG E V  + TF +   
Sbjct: 439 LNPMKFNLPHWRFLSKERPELPDIDLDSEGSKRHEIIQITKEHYGEENVLNMGTFTTEGT 498

Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQAIADDSRF-----REARLADPSV 508
           ++ +    R L +       +  LIP       S  +    + +      +E        
Sbjct: 499 RSTVLTSCRGLGIDKDIAHNIANLIPTRKGGIWSLHECFYGNPKEGTKPAKEFCREVEKY 558

Query: 509 DRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGL 568
           + L E    +EGL      HA+G++I      +   M     S LP+TQF+ +     G 
Sbjct: 559 EGLKEAMLSIEGLISGRGQHASGVIIFPDGYIKQNAM-MKTTSGLPITQFDAEDSIYMGG 617

Query: 569 IKFDFLGLKTLTLLQKSLDFLAQR-------------GVKVDLSLIPFDDHETYHLLTTK 615
           +K D+L +  L  ++ +LD L +                     ++  +  + + LL   
Sbjct: 618 LKLDYLSINALDRIRTALDLLLEHGKIEWQGSLRATYNKYFHPDVLEMESPKMFDLLFEG 677

Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP-IDNIVVYNNRKNGKEKIVS- 673
             L  FQ E++  +QAL  + P   +++ A  SL R     +  +    R     +    
Sbjct: 678 HVLNAFQFETAVGQQALTKINPRSFDELCAGNSLMRLSTDGEQPLDKYVRFKNNIQDWYE 737

Query: 674 ----------IHPLIDPMLKETQGVIIYQEQVM--QIAQLLSGYSLSEADVLRRAMGKKI 721
                        +++  L +  G+   QE +M   + + ++G+SL++A+  R+A+ K  
Sbjct: 738 EMKTAGLNEEEIKILEEHLLDRYGICDTQEGLMLLAMDERIAGFSLTQANKFRKAVAKAN 797

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAK-FADYGFNKSHAAAYAVISYQTAWMK 780
           ++ ++ Q+ +F  G  K G  K     ++    K    Y F+  H A Y +I      + 
Sbjct: 798 QKLIEDQRIKFYEGGEKTGARKVFLDYVWNKELKPQFGYSFSLPHIAGYTMILMIEMNIC 857

Query: 781 THYPVEFLAASM-------TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--G 831
             Y   +   +          E +   K     +        I+ P +N    +F     
Sbjct: 858 HRYGAIYWKTACLSVNAGMIGETEKGTKYGAIAKAVGDMKGDILNPDINLSNKEFTPLEE 917

Query: 832 DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR-VDSKKLNRRVLESLVFAGA 890
           +N+I + L  I G+GT     I+E     P+ S  DF  + VD   ++   + SL+ AG 
Sbjct: 918 ENKILFGLKPIAGLGTDAIEKIIEHR---PYKSFGDFFKKIVDPGLISEAKVVSLIKAGC 974

Query: 891 LDCFGYSRMQLL 902
            D F  +R  L+
Sbjct: 975 FDSFYPNRRLLM 986


>gi|255316456|ref|ZP_05358039.1| DNA polymerase III catalytic subunit, DnaE type [Clostridium
           difficile QCD-76w55]
          Length = 482

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 131/409 (32%), Positives = 213/409 (52%), Gaps = 24/409 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+ YSLL+  + + ++       +    +ITD   ++ A+ F ++  +   +PIIG 
Sbjct: 91  LHGHTEYSLLDSIVRIGDL---AKETEYS-CSITDHGVMYGAINFYKQMVSKNKKPIIGF 146

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           +   +  D     N           +VLL     GY+ + +L S  Y  +   +S +I  
Sbjct: 147 EAYSESIDGSMNKN----------HLVLLAKDEVGYKNISKLCSMAY--NNFYKSPQIKY 194

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
           SWL++   +G+I+L+G  +G I RA    ++++A++  L  K +F D  Y+ +QRH   D
Sbjct: 195 SWLEKY-NKGVIVLSGCIAGEIPRAIADGNNKLAKQIALKLKGIFKDDFYIEIQRHNIKD 253

Query: 194 R-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
                 Q++ LA   ++ +VAT+++ +L +ED   H+  +     T +    R + + D 
Sbjct: 254 EDKINKQLMLLAKKLDIKVVATDDAHYLKKEDSLVHETHLCNQTKTTMDNPKRFKFSGDG 313

Query: 253 YLKNRS-EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
           Y  +   +M   + D+PE L NT+EI       L          +    D+     E   
Sbjct: 314 YYVHTCGDMEEKYKDIPEVLFNTLEI--MDKCDLHFDFGHNILPVFPREDEKNLNNEEYF 371

Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
           +     G + R      +  Y + +Y++RL+FE+  I +M +  YFLIV DFI +AKKNN
Sbjct: 372 KKLCEEGFKERFYG---SSKYESVEYKERLEFEVKTICKMGYPDYFLIVWDFINFAKKNN 428

Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
           IP+GPGRGS  GS+ AY L IT++DP+R+ LLFERFLNPDR+SMPD D+
Sbjct: 429 IPIGPGRGSCVGSLVAYVLKITEMDPIRYDLLFERFLNPDRISMPDIDV 477


>gi|254392772|ref|ZP_05007944.1| DNA polymerase III [Streptomyces clavuligerus ATCC 27064]
 gi|197706431|gb|EDY52243.1| DNA polymerase III [Streptomyces clavuligerus ATCC 27064]
          Length = 921

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 209/838 (24%), Positives = 359/838 (42%), Gaps = 45/838 (5%)

Query: 217  SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
              +   E +   DVL A      V ++        +                 A      
Sbjct: 1    MRYERREQHRLADVLDAARLLRPVPRRGVLDPGERYLKSGPEMAEVAARVAAAAGAPAAR 60

Query: 277  IARRCSFILQVHAPI-----------LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
              R      +V A              P F E +      E  + +R           A 
Sbjct: 61   GRRLLGETAEVAAQCEVDPVRDLGLGRPHFPEPQVVGAGAEPGDGMRLLR----RRCEAG 116

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
              +           +L  EL VI ++ +  YFL VA  +   +   I V   RGSGAGS+
Sbjct: 117  MTVRGLDRDARALDQLHHELAVIEQLGYEAYFLAVAQVVADTRAMGIRVA-ARGSGAGSM 175

Query: 386  TAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
              ++L I   +PL   LLFERFL+  R ++PD D+D    RR EV   +  ++G ERVA 
Sbjct: 176  VNHSLFIATANPLEHRLLFERFLSARRRTLPDIDLDVESHRRLEVYDRIFERFGSERVAV 235

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
                 + +A+ ALRD G AL +    VDR+ K  P+  A  +   A+A+    R+     
Sbjct: 236  TGMPETYRARHALRDTGLALGIRPRTVDRIAKSFPHIRACDI-RSALAELPELRQLARHA 294

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
                 L E+++ L+ L R  + H  G+++    L   +P+        P+ Q +   +E 
Sbjct: 295  GRFGPLWELAEGLDALPRGYAMHPCGVILSSTSLLDRLPVQ-PTPGGYPMVQADKHDVED 353

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD----LSLIPFDDHETYHLLTTKGTLGIF 621
             GL+K D LG++  + +  ++  + +   +         +   D +T+ L+     LG F
Sbjct: 354  MGLVKLDVLGVRMQSAMAHAVAEIRRTTGRHIDLDSPDHVDLGDEQTFALIRRGQVLGCF 413

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLID 679
            Q+ES G++  +  +QP  ++DIIA +SL+RPGP+   +   +   ++G E     HP + 
Sbjct: 414  QIESPGVQDLIARLQPRHLQDIIADISLFRPGPVKGGMPARFIAARHGAETPRYPHPDLV 473

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
            P++ +T GV+I+ EQ+M+I ++L+G   + ADV RRA+    +    + +  F   A++ 
Sbjct: 474  PIMDDTYGVVIWHEQIMEILRVLTGCDRAAADVARRALADTERLP--RVEAWFRRCAAER 531

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G +  +   +++++ +F  YGF ++HA A+AV + Q+AW+KTHYP  F A  +  +    
Sbjct: 532  GYTPAVIGEVWDIIKEFGAYGFCRAHAVAFAVPAVQSAWLKTHYPAAFYAGLLQHDPGM- 590

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----DNRIYYSLAAIKGVGTTTARHIME 855
               +   QDA+QF + I+P  +N       V        +  +L+ I+G+ T  +  I  
Sbjct: 591  WAPRVLVQDAKQFGVTILPVDINHSRSAHSVEQTADGWGVRLALSTIRGITTAESARIEA 650

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG-YSRMQLLQSLDNIQKYAQW 914
            A   +P+  L+D   R         + + L+  GAL   G  +R  LL     + + A+ 
Sbjct: 651  A---QPYTGLQDLWLRARPSL---PLAQRLITIGALGPQGRLTRRDLLLQATELHRSARN 704

Query: 915  VEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPI 974
              +   +    +     G  +                   E  VL    S H L+ +  +
Sbjct: 705  --RTTADGQLPL-----GDETHAGAPAGLPEMTGRDVLNAEIDVLSIDVSRHLLEHHHRL 757

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            L ++G        A  RG  + +A +  S Q      G R+ +VT  + +   +  FF
Sbjct: 758  LAELGATDAHHLQAMHRGQQVLVAGVRASTQTPPVPSGKRVIFVTLEDGSGLVDVAFF 815


>gi|71894540|ref|YP_278648.1| DNA polymerase III DnaE [Mycoplasma synoviae 53]
 gi|71851328|gb|AAZ43937.1| DNA polymerase III alpha subunit [Mycoplasma synoviae 53]
          Length = 990

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 269/970 (27%), Positives = 449/970 (46%), Gaps = 102/970 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA---LEFSQKACAAGIQPI 70
           L + + +S L  A+ LN + + I + +   +AITD  NL++    LEF +       + I
Sbjct: 9   LHLKTEFSFLNSAIRLNKLFNLIESQKIEYLAITDKENLYALPYLLEFRE---KYKFKLI 65

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IGC+ ++D +                  +++L     GY+ + EL+   Y          
Sbjct: 66  IGCEFELDNK----------------LEVIILAKNLAGYKLINELI---YQKSNNNS--- 103

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I LS L    +E + ++   ++G                             Y+      
Sbjct: 104 INLSDL---NSENIFVIDSDTNG-----------------------------YL------ 125

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                +  + ++         V   N  + S+   E  D ++      ++ + +   +  
Sbjct: 126 -----KNKKSLE---------VELPNFFYNSKFQLENKDNVVYAPVKKIIDKFENFTLNI 171

Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              ++   +  + F D     E      +     L +        I+KE    +    + 
Sbjct: 172 LDKIREEFKENNNFDDFYSEEEFNDLDEKIYQNTLNLADQCFELEIDKEIKLPEFSSNS- 230

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            + +  + ++       +   Y      +R+++EL++I    F  YFLI+AD + WA+KN
Sbjct: 231 -KEEIESKIKASERTKYLLLNYDKDLVIERINYELSIIKEQNFVDYFLIIADALSWARKN 289

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            I +GPGRGS +GS+ AY L ITD++PL F LLFERFLN  R++ PD DID   DRR EV
Sbjct: 290 KISIGPGRGSVSGSLVAYVLEITDVNPLDFDLLFERFLNTKRVTYPDIDIDIQDDRRSEV 349

Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
           + Y+  KYG +R A I TF +L AK+A++DVGR L +  S+V+ + K I +   +     
Sbjct: 350 LDYIFEKYGQKRCALITTFSTLGAKSAIKDVGRMLGISNSEVNLVTKTINDFDKNLTLES 409

Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
               + R  + +      + L E +  +EGLYR    HAAGIVI +  ++   P+ + + 
Sbjct: 410 --EYNKRNSKYKAIVSKYENLHEYATYIEGLYRQTGVHAAGIVIANNDITNYFPINKVLD 467

Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD---DHE 607
               V   +++ +EK GLIK DFLGLK LT+++   + +  +    ++     +   DH+
Sbjct: 468 KYNQVQL-SLENLEKYGLIKIDFLGLKNLTIVKNIENLINPKLHFDNVINQNLNKFIDHK 526

Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
           T+ +L    T GIFQLES GM++A+  ++ D  EDI A++SLYRPGP   I +Y   K  
Sbjct: 527 TFSILNDLKTEGIFQLESDGMKRAISQVKIDSFEDIYAIISLYRPGPSQYIPIYGKNKKD 586

Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             +I  +HP+ D ++  T G+I+YQEQ+MQIAQ ++G S SEAD+LRRA+ KK  +E+  
Sbjct: 587 PSQIEKVHPIYDKIVAPTFGIIVYQEQIMQIAQEVAGLSFSEADLLRRAISKKNSQELKS 646

Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            K +F  G +KN +S  +   I+  + KFADYGFNKSHA AYAV++ + A+ K  YP  F
Sbjct: 647 YKTKFFEGGAKNNVSSDLLNRIYSNIEKFADYGFNKSHAVAYAVLALKLAFYKARYPFIF 706

Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
               +     + E   K+ Q+A +  I+I    +N   ++    +N +Y S   IKG G 
Sbjct: 707 YKVLLDNSFSSQENTSKYVQEATKLKIKINAADINISSLNTVEENNNLYLSFLTIKGFGE 766

Query: 848 TTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
            +A  +++       F +  D   R+    + +  L  L+ A     FG +   L+ SL+
Sbjct: 767 NSATKLIQERNRAGKFKNFFDAAIRLGMIGIKKATLSLLINANIFRSFG-NINTLINSLE 825

Query: 907 NIQKYAQWVEKNRTNKHENI------------FAHEKGTFSDKITLEKFSVENSSVRFEN 954
           ++  +   + K        +               +         +      +     + 
Sbjct: 826 DVSNFVDLINKKVKKAFMTLDKSEQTDGKWISLYEDFAREEQFPNILDEVEISDKEIMDL 885

Query: 955 EQRVLGFYFS 964
           E +  G   S
Sbjct: 886 ETKAYGISLS 895


>gi|148284147|ref|YP_001248237.1| DNA polymerase III alpha chain [Orientia tsutsugamushi str. Boryong]
 gi|146739586|emb|CAM79338.1| DNA polymerase III alpha chain [Orientia tsutsugamushi str. Boryong]
          Length = 1234

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 226/532 (42%), Positives = 333/532 (62%), Gaps = 14/532 (2%)

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
             +  +++ + +LEGL+RH S HAAGIVIG + L   + +Y+D  SD+PV Q++MK++E A
Sbjct: 594  QIQDVIKTALELEGLHRHVSVHAAGIVIGRQNLIDTIALYKDKNSDIPVVQYSMKYLEAA 653

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            GLIKFDFLGL+TLT++ K L+ L  + +  +++ + F+D  TY LL+   T+G+FQ ESS
Sbjct: 654  GLIKFDFLGLQTLTIISKCLELLKNKNINFEINNLEFNDKLTYQLLSNGNTIGVFQFESS 713

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
            GM+ AL+ ++PDCIED+IAL +LYRPGP+DN+  Y + K+G+ K   +H  ++P+LKET 
Sbjct: 714  GMQDALKRLKPDCIEDLIALGALYRPGPMDNLRTYIDCKHGRLKPNYLHSKLEPILKETY 773

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G IIYQEQVM+IA++L+ Y+LS+AD LR+AM KKIK EM+ QK  FI+GA +NGISK  A
Sbjct: 774  GTIIYQEQVMEIAKVLAKYTLSKADFLRQAMAKKIKSEMENQKVIFINGAIENGISKNQA 833

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
             +IF  + KFA YGFNKSHAA YAVISYQTA++K +YP EFL A + L++++ +KI  F 
Sbjct: 834  ESIFAEVEKFAGYGFNKSHAAIYAVISYQTAYLKANYPTEFLVACLNLDINDQDKIDLFI 893

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDS 864
            Q+A+Q  I+++PP++N     F +  DN I ++L AIK V     + I+E       F +
Sbjct: 894  QEAKQLGIKVIPPNINKSKEYFSISADNAIIFALGAIKNVTPNIGKIIVEERLHRGEFKT 953

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFG--YSRMQLLQSLDNIQKYAQWVEKNRTNK 922
            + DF  R DS  ++R+V ESL++AG  D F    +R QL  S+D I  YA    KN    
Sbjct: 954  ILDFAVRTDSYSISRKVFESLIYAGCFDDFQQPVNRHQLFASIDRINNYASKHAKNIHQ- 1012

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
                F+    T  D   L   S  +   +   E  VLG + + +P+  Y+ +L K G+  
Sbjct: 1013 ----FSFITSTVED--VLSPISEYSLHEKAMKEFEVLGSFLTCNPISPYESLLAKHGVVN 1066

Query: 983  YEES-VATIRGNN-IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +        G+  +R+A +V  K  + + +G     +  S+     E   F
Sbjct: 1067 SKYLSTTLKSGSTAVRIAGIVQKKNSRMSPRGK-FNIIKLSDSCGNSEVKIF 1117



 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 206/507 (40%), Positives = 284/507 (56%), Gaps = 24/507 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+HL+V SSYSLLE  LS   IL     D+ PA+A+TD +NLF +LEF+  A   GIQPI
Sbjct: 5   FIHLRVQSSYSLLESTLSTQKILSLAQRDEMPAVALTDKSNLFGSLEFALAAAKEGIQPI 64

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G  L+I           G+   P    I+L+     GYQ L++L S  Y+ +       
Sbjct: 65  HGIILNIQY--------YGQNDSPKYSEILLIAQNKAGYQNLLKLASFPYIKNDRTTINH 116

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           + L  L     EG+I+L+G   G I    F  +  +AE     FK +FG+R Y  + R  
Sbjct: 117 VTLDDLFTY-NEGIIVLSGYFYGIIGNLLFEKNFVLAENYAKKFKTIFGNRFYFEINRIT 175

Query: 191 GYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               Y  E   VQLA    +PLVATNN LF   E Y  H+VLM + +     + D+ ++ 
Sbjct: 176 SKQIYAIEKSYVQLAQKLNIPLVATNNILFDEGEKYATHEVLMKICN--PNIEIDKFKIN 233

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              Y K+++EM+  F DLP+A+ENTV + +R SF+L+       + +  +      EE  
Sbjct: 234 NQCYFKSQNEMIETFWDLPQAIENTVYLTQRISFMLE-----AKKPLLPKFAKDADEENK 288

Query: 310 ELRNKAVAG-----LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +R  +  G                     + Y  RL++EL++I  M FSGYFLIV+DFI
Sbjct: 289 LIRQLSEEGLSQKLKLQFKNYSTAEFEDKKKIYFDRLNYELSIICSMNFSGYFLIVSDFI 348

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           +W+K+NNI V P RGSGA SV A+ L IT++DP+RF LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 349 KWSKENNISVNP-RGSGAASVVAWGLGITNLDPIRFGLLFERFLNPERVSMPDFDIDFCQ 407

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           +RR EVI YV+ KYG  +V QIITFG LQAKA ++DV RAL + Y+  + +  LIP +  
Sbjct: 408 ERRGEVINYVRRKYGEGKVGQIITFGKLQAKAVVKDVARALGLGYNYANYITSLIPFNAV 467

Query: 485 HPVS-LQAIADDSRFREARLADPSVDR 510
            PV+  +AI   +    A   +   + 
Sbjct: 468 RPVTLQEAIDKVNELNNAYTGNDLYNF 494


>gi|88803783|ref|ZP_01119306.1| DNA polymerase III alpha subunit [Polaribacter irgensii 23-P]
 gi|88780311|gb|EAR11493.1| DNA polymerase III alpha subunit [Polaribacter irgensii 23-P]
          Length = 985

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 240/1035 (23%), Positives = 413/1035 (39%), Gaps = 114/1035 (11%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L  HS YSL  G  S   +L+   A+   A+A+TD NN  + + F Q+A    I P++G 
Sbjct: 3    LNCHSYYSLRYGTFSEVALLELAVANNINALALTDINNTSACMNFIQQAKKYDIHPVVGV 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
                                 T    V L     G+Q +   +S  +L  +         
Sbjct: 63   DF----------------RNGTSQQFVALAENNTGFQNINRYLS-SFLTSKTA------- 98

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
                       I  T      +   + F      EK L      F +  ++ +      +
Sbjct: 99   -----------IPSTPTPLENVFIVYPF------EKVLELHLTSFAENEFIGIS-IAEIN 140

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            + R S +      +E  +V        S+ D+ AH +L A+ ++T++S+        +  
Sbjct: 141  KLRFSYL----KKYEDKIVIQQQVTIRSKNDFNAHRLLRAIDNNTLLSKLPTTEECLETE 196

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
              + +  +         + +  +   +   +   +                +E+   L  
Sbjct: 197  RMHTATALEDSFKEFPFILDNTKALLKKCRVHFGYDTARTNQNLNVYRGSFEEDCTLLLQ 256

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
                 L  R    ++           RL  EL VI  +KF  +FLI  D I +AKKNN  
Sbjct: 257  LCADKLHKRYPAPSL-------KVHARLKKELKVIVELKFVSFFLINYDIICYAKKNNF- 308

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
               GRGSGA S+ AY L ITD+DP+   L FERF+NP R S PDFDIDF    R  + +Y
Sbjct: 309  FHVGRGSGANSIVAYILGITDVDPVELDLYFERFINPFRASPPDFDIDFSWKDRATMTQY 368

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            + +++  + VA + T+ + + +A +R++G+   +P  ++D+L +         ++   + 
Sbjct: 369  IFDRF--DHVALLATYNTFKYRAVIRELGKVFGLPKEEIDKLSRGAREPKVDGIANLVLK 426

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                                  + +EG   + S H+AG++I ++P+              
Sbjct: 427  --------------------YGKLIEGFPNYVSVHSAGVLILNKPIHYYSATSMPP-KGF 465

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV-----KVDLSLIPFDDHET 608
            P  QF+M   +  G+ KFD LG + L  ++ +L  + +         +        D   
Sbjct: 466  PTVQFDMYIADDVGVFKFDILGQRGLAKIKDALQIIKENHPGAPEIDITAIEAFKKDKNI 525

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKN 666
              LL   G +G + +ES  MR  ++ +Q      ++A  S+ RPG   + +   Y  R  
Sbjct: 526  NMLLKNGGAIGAYYVESPAMRGLMQKLQTQDYLGLVAASSIIRPGVSGSGMKEEYIKRHR 585

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
              EK    HP++  ++ ET GV++YQE VM++A   +  SL EADVLRR M  K +   +
Sbjct: 586  FPEKRKEAHPILLQIMPETYGVMVYQEDVMKVANQFADLSLGEADVLRRGMSGKYRSIEE 645

Query: 727  K--QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
                + +FIS   K G +  +   ++  +  FA Y F K H+A+YAV SYQ+ ++K +YP
Sbjct: 646  FKAVEAKFISNCRKKGHADPLIFEVWNQIKSFAGYAFAKGHSASYAVESYQSLFLKCYYP 705

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
            +EF+ A +            +  +A+     I  P +NT      V    IY     +K 
Sbjct: 706  IEFMTAVLN-NGGGFYTAAHYIHEAKMCGATIALPCINTSDHANIVRGKTIYLGFGYLKN 764

Query: 845  VGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            +     +  +        F S+EDF +R+    ++   L  L+   A       +  LL 
Sbjct: 765  LEHLLIQRFLTERQLHGCFLSMEDFIARI---AVSIEQLTVLIRIDAFRFTNKPKTTLLW 821

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
              +   K      K      E +F      F     + K    +      +E  +LGF  
Sbjct: 822  --EATFKLNARTSKE-VQTQEKLFRTPHQNFE----IPKLHT-HWLEDVYDEMELLGFTI 873

Query: 964  SGH-----PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
              H       D + P ++   +  + +         + L   +V+ +  KT +G  +   
Sbjct: 874  --HDYFSLVTDQFHPHIKAKQMAEFAD-------KKVVLYGQLVATRFNKTSQGKLMRLT 924

Query: 1019 TFSEPAKE-YEANFF 1032
            TF +     ++A  F
Sbjct: 925  TFIDADGNYFDAVHF 939


>gi|293411935|ref|ZP_06654660.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291469490|gb|EFF11979.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 1172

 Score =  312 bits (800), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 263/969 (27%), Positives = 428/969 (44%), Gaps = 102/969 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L V + +SL E AL   N +         A+   D+ N+ S +   + A    +  I G 
Sbjct: 4   LMVRTDFSLGESALKAENAVKIAREAGYTAVISADSMNIASVIPLQRAA-GDDMAVICGV 62

Query: 74  QLDIDMQDNLKMTNQ---------GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +L+I      +   +                  S   L+   +GY+ + EL++     +Q
Sbjct: 63  KLNIVDDPTYEHRAKLAKESMGCMESLERGRNYSFTALIKNEQGYRDICELMTAANTREQ 122

Query: 125 GKQSVRICLSWLQE-IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182
                R+ L  L        +I+LT      I   +  N      K + +     G +  
Sbjct: 123 FYFVPRLSLEQLVSTYAKGNIILLTA----DIGSVYQRNDFA---KIISSLITAGGKNNF 175

Query: 183 YVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
           Y  +  H   +      + +++A   ++  VA   + + S +D +  D+   V ++  + 
Sbjct: 176 YSVVYPHPTPFYDQINVRAMKVASALKIEPVAFYPAYYESIDDADIKDIAHMVTNNIKID 235

Query: 242 QKDR-----PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
           Q  R      R    +  ++  E +  FS   +        +     I+          +
Sbjct: 236 QPHRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIDACTWRW-HEL 294

Query: 297 EKECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
                 +  +E   L   AVAGL  R      G        + Y +RL +E++ + R+ F
Sbjct: 295 PPALPKMADDEPATLMKLAVAGLRKRLTTKEFGYTPPASENRVYVERLKYEMDTLTRLGF 354

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
            GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+R  LLFERF+NP+R+
Sbjct: 355 CGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFINPERL 414

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +ALRD  R   +  S   
Sbjct: 415 DLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARIYGV-ESADM 473

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
            + K + N     + L+ + +  +                 + KL+ L R    HAAG++
Sbjct: 474 AVSKELKNVEDDSLPLEELRE--QLASLDKYATKYPDAFNAACKLQSLMRGYGRHAAGMI 531

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
           +   PL++  P+ R    D     F+ ++ E  GLIK D LGL TL LL  +  ++ +  
Sbjct: 532 VAGVPLTERTPVERR--GDARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRYIKENT 589

Query: 594 -VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ----PDCIEDIIALVS 648
              ++L  I  +D +         T G+FQLES  MR+ L+ +     P   + ++A  +
Sbjct: 590 GEDINLDAISLEDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTVVATTA 649

Query: 649 LYRPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
           L+RPGPI + ++ +     K      S+HP++D +  ET GVI+YQEQ M   +LL+G++
Sbjct: 650 LFRPGPIQSGMLDDYVSVAKGFMTPESLHPVLDELTAETNGVILYQEQTMNATRLLAGFT 709

Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGAS----------------------------- 737
           ++EAD +R+A+GKK  E+M    E+FI  A                              
Sbjct: 710 MAEADGVRKAIGKKDMEKMKSMGEKFIVQAQAGWIDVELEDGTTQRIHRAEHFKCEDGTL 769

Query: 738 -----------------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
                                    G+S+  A  I+    K   Y FNKSH+ AY++ISY
Sbjct: 770 KTVEEALEFGAKLPINAVRVTASHPGLSEMKAKEIWTAFEKNGAYQFNKSHSVAYSLISY 829

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---- 830
           Q+ W+KTHYP EF AA++T  +   +K +   +DA  + I+++PP VN      ++    
Sbjct: 830 QSMWLKTHYPAEFFAAALT--ILGEDKHQGLVKDALTYGIRVLPPDVNVSSNRIEIRTLE 887

Query: 831 GDNRIYY-SLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             +++ Y   +A+KG      + IM A       F+SL  F   V+ +  N RV ESL  
Sbjct: 888 DGSQVLYAPFSAVKGCSENGCQAIMRAREKVGGKFESLAQFEEAVEKRACNSRVRESLQK 947

Query: 888 AGALDCFGY 896
            GA      
Sbjct: 948 VGAFASIEP 956


>gi|302533607|ref|ZP_07285949.1| bacterial DNA polymerase III alpha subunit [Streptomyces sp. C]
 gi|302442502|gb|EFL14318.1| bacterial DNA polymerase III alpha subunit [Streptomyces sp. C]
          Length = 800

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 223/818 (27%), Positives = 354/818 (43%), Gaps = 45/818 (5%)

Query: 199 QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
           + V  A    +  V TN   +         DVL A      +  +              +
Sbjct: 1   RTVGFAAEQGVTAVLTNAVRYADPGQGPVADVLDAARRLVPLGPRSSRDSGERWLKDPAA 60

Query: 259 EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL----RNK 314
                      A     +  R  +   +          +          E  L    R  
Sbjct: 61  MTEVAERIAEAAGLRAADARRLLARTRETAEACSVDPEDDLGIGSVHFPEARLVGAARRT 120

Query: 315 AVAGLEVRLAQGAIAKGY-HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
           A   L  R A G + +GY   + Y  R++ EL+VIA   ++ YFL VA  +   ++  I 
Sbjct: 121 AQRVLASRAAAGMVLRGYAGRRAYWDRMEEELDVIAHHGYASYFLTVAQVVDDVRQMGIR 180

Query: 374 VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
           V   RGSGAGS+  + L I   DP+   LL ERFL+  R  +PD DID    RR EV R 
Sbjct: 181 VA-ARGSGAGSLVNHLLGIAHADPVERGLLMERFLSKRRRVLPDIDIDVESARRLEVYRR 239

Query: 434 VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
           +  ++G ERVA +    + + + A+RDVG AL M  + VDRL K  P+  A        A
Sbjct: 240 IIGRFGAERVATVAMPETYRVRHAVRDVGAALSMDPAAVDRLAKAFPHIRARDARAAL-A 298

Query: 494 DDSRFREARLAD----PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
           +    RE R          +RL ++ + L+ L R  + H  G+++ D  L    P+    
Sbjct: 299 ELPELREVREGREGRAEEHERLWDLVEALDALPRGTAMHPCGVLLSDASLLARTPVVPTS 358

Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ----RGVKVDLSLIPFDD 605
               P++QF+   +E  GL+K D LG++  + +  ++  L +         D + +P  D
Sbjct: 359 GEGFPMSQFDKDDVEDLGLLKLDVLGVRMQSAMAHAVTELKRATGLDLDLDDPAQVPPGD 418

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNN 663
             TY L+ +  TLG FQ+ES G R  +  +QPD   D++  +SL+RPGP+   +   +  
Sbjct: 419 GPTYELIRSAETLGCFQIESPGQRDLVGRLQPDSFHDLVVDISLFRPGPVAADMVRPFIE 478

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
            ++G+  +   HP +   L+ET GV+++ EQ+++I  +++G    EAD +RR +     +
Sbjct: 479 ARHGRAPVRFPHPDLADALRETYGVVVFHEQIIEIVHVMTGCGRDEADRVRRGLSD--PD 536

Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
              + K  F + A+  G +  +    +E++  F  YGF K+HA A+AV +YQ+AW+K H+
Sbjct: 537 SQGRIKAWFAATAAGRGYAPEVVARTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHH 596

Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV------------G 831
           P  F A  +T +     K +    DAR+  + ++P  VN       +             
Sbjct: 597 PAAFYAGLLTHDPGMYPK-RLLLADARRRGVPVLPLDVNRSAAAHHIELVSDGQEGRGPE 655

Query: 832 DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              +  +L+ + G+    AR I    A +P+ SL DF  R       R V E L   GAL
Sbjct: 656 RWGLRLALSDVHGISKKEARRI---EAGQPYASLRDFWDRAHP---GRPVAERLAQVGAL 709

Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
           D FG +R  LL  L  +   AQ     R      +     G  +  + L        + R
Sbjct: 710 DAFGANRRDLLLHLTELH-GAQRAVGTRGAAQLPLGG---GRSTAPVGLPDL---TDAER 762

Query: 952 FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
              E  VLG   S H ++ +   L  +G+        T
Sbjct: 763 LSAELGVLGMGASRHLMNDHHAFLAGLGVTPAARLRDT 800


>gi|189184300|ref|YP_001938085.1| DNA polymerase III alpha chain [Orientia tsutsugamushi str. Ikeda]
 gi|189181071|dbj|BAG40851.1| DNA polymerase III alpha chain [Orientia tsutsugamushi str. Ikeda]
          Length = 1234

 Score =  311 bits (796), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 224/532 (42%), Positives = 335/532 (62%), Gaps = 14/532 (2%)

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
             +  +++ + +LEGL+RH S HAAGIVIG + L   + +Y+D  SD+PV Q++MK++E A
Sbjct: 594  QIQDVIKTALELEGLHRHVSVHAAGIVIGRQNLIDTIALYKDKNSDIPVVQYSMKYLEAA 653

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            GLIKFDFLGL+TLT++ K L+ L  + +  +++ + F+D  TY LL+   T+G+FQ ESS
Sbjct: 654  GLIKFDFLGLQTLTIISKCLELLKNKNINFEINNLEFNDKLTYQLLSNGNTIGVFQFESS 713

Query: 627  GMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ 686
            GM+ AL+ ++PDCIED+IAL +LYRPGP+DN+  Y + K+G+ +   +H  ++P+LKET 
Sbjct: 714  GMQDALKRLKPDCIEDLIALGALYRPGPMDNLRTYIDCKHGRLQPNYLHSKLEPILKETY 773

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            G IIYQEQVM+IA++L+ Y+LS+AD LR+AM KKIK EM+ QK  FI+GA +NGISK  A
Sbjct: 774  GTIIYQEQVMEIARVLAKYTLSKADFLRQAMAKKIKSEMENQKVIFINGAIENGISKNQA 833

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
             +IF  + KFA YGFNKSHAA YAVISYQTA++K +YP EFL A + L++++ +KI  F 
Sbjct: 834  ESIFAEVEKFAGYGFNKSHAAIYAVISYQTAYLKANYPTEFLVACLNLDINDQDKIDLFI 893

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDS 864
            Q+A+Q  I+++PP++N     F +  DN I ++L AIK V     + I+E       F +
Sbjct: 894  QEAKQLGIKVIPPNINKSKEYFSMSADNAIIFALGAIKNVTPNIGKIIVEERLHRGEFKT 953

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
            + DF  R DS  ++R+V ESL++AG  D F    +R QL  S+D I  YA    K     
Sbjct: 954  ILDFAVRADSYSISRKVFESLIYAGCFDDFQQQVNRHQLFASIDRINNYASKQAK----- 1008

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
            H + F+    T  D   L + S  +   +   E  VLG + + +P+  Y+ +L K G+  
Sbjct: 1009 HIHQFSFITSTVED--VLSQISEYSLHEKAMKEFEVLGSFLTCNPIAPYESLLAKHGVIN 1066

Query: 983  YEES-VATIRGNN-IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +        G+  +++A +V  K  + + +G     +  S+     E   F
Sbjct: 1067 SKYLSTTLKSGSTAVKIAGIVQKKNSRMSPRGK-FNIIKLSDSCGNSEVKIF 1117



 Score =  294 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 206/507 (40%), Positives = 283/507 (55%), Gaps = 24/507 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F+HL+V SSYSLLE  LS   IL      + PA+A+TD +NLF +LEF+  A   GIQ I
Sbjct: 5   FIHLRVQSSYSLLESTLSTQKILSLAQRYEMPAVALTDKSNLFGSLEFALAAAKEGIQAI 64

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G  L+I           G+   P    I+L+     GYQ L++L S  Y+ +       
Sbjct: 65  HGIILNIQY--------YGQNDSPKYSEILLIAQNKAGYQNLLKLASFPYIKNDRTTINH 116

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           + L  L     EG+I+L+G   G I    F  +  +AE     FK +FG+R Y  + R  
Sbjct: 117 VTLDDLFTY-NEGIIVLSGYFYGIIGNLLFEKNFVLAENYAKKFKTIFGNRFYFEINRIT 175

Query: 191 GYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
               Y  E   VQLA    +PLVATNN LF   E Y  H+VLM + +     + D+ ++ 
Sbjct: 176 SKQIYAIEKSYVQLAQKLNIPLVATNNILFDEGEKYATHEVLMKICN--PNIEIDKFKIN 233

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
              Y K+++EM+  F DLP+A++NTV +A+R SF+L+       + +  +      EE  
Sbjct: 234 NQCYFKSQNEMIETFWDLPQAIKNTVYLAQRISFMLE-----AKKPLLPKFAKDADEENK 288

Query: 310 ELRNKAVAG-----LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +R  +  G                     + Y  RL++EL+VI  M FSGYFLIVADFI
Sbjct: 289 LIRQLSEEGLSQKLKLQFKNYSTAEFEDKKKIYFDRLNYELSVICSMNFSGYFLIVADFI 348

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           +W+K+NNI V P RGSGA SV A+ L IT++DP+RF LLFERFLNP+R+SMPDFDIDFCQ
Sbjct: 349 KWSKENNISVNP-RGSGAASVVAWGLGITNLDPIRFGLLFERFLNPERVSMPDFDIDFCQ 407

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           +RR EVI YV+ KYG  +V QIITFG LQAKA ++DV RAL + Y+  + +  LIP +  
Sbjct: 408 ERRGEVINYVRRKYGEGKVGQIITFGKLQAKAVVKDVARALGLGYNYANYITSLIPFNAV 467

Query: 485 HPVS-LQAIADDSRFREARLADPSVDR 510
            PV+  +AI   +    A   +   + 
Sbjct: 468 RPVTLQEAIDKVNELNNAYTGNDLYNF 494


>gi|18466680|ref|NP_569487.1| putative DNA polymerase III alpha subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|16505996|emb|CAD09882.1| putative DNA polymerase III alpha subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
          Length = 1172

 Score =  311 bits (796), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 261/969 (26%), Positives = 425/969 (43%), Gaps = 102/969 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L V + +SL E AL   N +         A+   D+ N+ S +   + A    +  I G 
Sbjct: 4   LMVRTDFSLGESALKAENAVKIARDAGYTAVISADSMNIASVIPLQRAA-GDDMAVICGV 62

Query: 74  QLDIDMQDNLKMTNQGKTP---------FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +L++      +                          L+   +GY+ + EL++     +Q
Sbjct: 63  KLNVVDDPTYEHRAHLAKESGGCMESLVRDRSYCFTALIKNEQGYRDVCELMTLANKREQ 122

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                R+ L  L     +G I+L    +  I   F         K + T     G D  Y
Sbjct: 123 FYFVPRLALDQLAAAYAKGNIIL---LTSDIGSVFQRRDFA---KIIGTLVTAGGRDNFY 176

Query: 184 VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
             +  H   +      + +++A   ++  VA   + + + +D +  D+   V ++  + Q
Sbjct: 177 SVVYPHPTPFYDQINVRAMKVASELKIEPVAFYPAYYEAVDDADIKDIAHMVTNNIKIDQ 236

Query: 243 KDR-----PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             R      R    +  ++  E +  FS   +        +     I++         + 
Sbjct: 237 PHRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIEACTWRW-HELP 295

Query: 298 KECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                +  +E   L   AVAGL  R      G        + Y  RL +E++ + R+ F 
Sbjct: 296 PALPKMADDEPATLMKLAVAGLRKRLTTKEFGYTPPASEHRVYVDRLKYEMDTLTRLGFC 355

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
           GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+R  LLFERF+NP+R+ 
Sbjct: 356 GYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFINPERLD 415

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +ALRD  R     Y     
Sbjct: 416 LPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARI----YGVDAA 471

Query: 475 LCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
              +            ++ +   +               + + KL+ L R    HAAG++
Sbjct: 472 DMAVSKEFKNLEDDSLSLEELREQLASLDKYATKNPEAFKAACKLQSLMRGFGRHAAGMI 531

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
           +   PL +  P+      +     F+ ++ E  GLIK D LGL TL LL  +  ++ +  
Sbjct: 532 VAGVPLVERTPVELR--GNARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRYIKEST 589

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ----PDCIEDIIALVS 648
           G  ++L  IP DD +         T G+FQLES  MR+ L+ +     P   + ++A  +
Sbjct: 590 GDDINLDAIPLDDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTVVATTA 649

Query: 649 LYRPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
           L+RPGPI + ++ +     K      S+HP++D +  ET GVI+YQEQ M   +LL+G++
Sbjct: 650 LFRPGPIQSGMLDDYVSVAKGFMAPQSLHPVLDELTAETNGVILYQEQTMNATRLLAGFT 709

Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGAS----------------------------- 737
           ++EAD +R+A+GKK  E+M    E+F+  A                              
Sbjct: 710 MAEADGVRKAIGKKDMEKMKSMGEKFVVQAQAGWIDVEMEDGTTQRIHRAEHFKCGDGAL 769

Query: 738 -----------------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
                                  + G+S+T A  I++   K   Y FNKSH+ AY++ISY
Sbjct: 770 RTVEEALEAGVKLPMAAVRVTGSQPGLSETKAKEIWDAFEKNGAYQFNKSHSVAYSLISY 829

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---- 830
           Q+ W+KTHYP EF AA++T  +   +K +   +DA  + I+++PP VN      ++    
Sbjct: 830 QSMWLKTHYPAEFFAAALT--ILGEDKHQGLVKDALTYGIRVLPPDVNVSSNRIEIRTLE 887

Query: 831 GDNRIYY-SLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
             +++ Y   +A+KG      + IM A       F+SLE F   V+ +  N RV ESL  
Sbjct: 888 DGSQVLYAPFSAVKGCSENGCQAIMRAREKVGGKFESLEQFEEAVEKRACNSRVRESLQK 947

Query: 888 AGALDCFGY 896
            GA      
Sbjct: 948 VGAFASIEP 956


>gi|330685790|gb|EGG97424.1| DNA polymerase III, alpha subunit [Staphylococcus epidermidis
           VCU121]
          Length = 626

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 218/680 (32%), Positives = 343/680 (50%), Gaps = 70/680 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H+SY LL  +L +++++ K   +    +AITDTN L+   +F      AGI P+ G 
Sbjct: 5   LNIHTSYDLLNSSLRISDVVKKAKNEGIEHLAITDTNVLYGYPKFYDACLEAGIHPVFGM 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            + +        T             VLL    +G + L +L S + + ++      I +
Sbjct: 65  TVYLTDGLYQLET-------------VLLAQNNDGLKDLYQLSSAIKMKEKE----DIPI 107

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHRG 191
            WL+      +I+                  + AE+  L F   F D   +Y+       
Sbjct: 108 EWLKRYANHLVII-----------------FKSAEEHHLQFIDAFNDKEHVYL------- 143

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                    + + +      V  N   +L+ ED +    L A+  ++ +          +
Sbjct: 144 -----NQDCIAINHRS---FVWLNTMRYLNNEDADTISALQAIKENSKLDLVAEQEDYHE 195

Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
           H            SD    + NT +IA+ C+  L  H  +LP+F     +  +     +L
Sbjct: 196 HLFNKNELRNLECSDE--LIVNTDKIAQMCTAELNYHQSLLPQFQTPNGETSKIYLWQKL 253

Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
            ++                     +Y +RL  E ++I  M F  YFLIV+D I +AK ++
Sbjct: 254 EDQLNH------------LNLKQPEYWKRLKHEYDIITNMGFEDYFLIVSDLIHYAKTHD 301

Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
           + VGPGRGS AGS+ +Y L IT IDP+RF+LLFERFLNP+R++MPD DIDF   RR++VI
Sbjct: 302 VMVGPGRGSSAGSLVSYLLGITTIDPIRFNLLFERFLNPERVTMPDIDIDFEDTRREKVI 361

Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
           +YVQ KYG   V+ I+TFG L A+A  RDVGR +      ++ + KLIP+     +    
Sbjct: 362 QYVQEKYGQLHVSGIVTFGHLLARAVARDVGRIMGFDEITLNEISKLIPHKLGITLEEAY 421

Query: 492 IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
              +  F++    +   +R  EI +KLEGL RH STHAAGI+I D  L +  P+      
Sbjct: 422 --QNDEFKQFVHRNYRHERWFEICKKLEGLPRHTSTHAAGIIINDHALYEYAPLTLGDTG 479

Query: 552 DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR-GVKVDLSLIPFDDHETYH 610
              +TQ+ M   E+ GL+K DFLGL+ L+++ + ++ + +   + +++  IPFDD + + 
Sbjct: 480 --LLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIINQVKKDLNINIEIERIPFDDPKVFE 537

Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
           LL+   T GIFQLES G+R+ L+ ++P+  EDI+A+ SLYRPGP++ I  Y  R++   K
Sbjct: 538 LLSQGDTTGIFQLESDGVRRVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSK 597

Query: 671 IVSIHPLIDPMLKETQGVII 690
           +  +H  + P+LK T GVII
Sbjct: 598 VEYLHKDLAPILKNTYGVII 617


>gi|255316457|ref|ZP_05358040.1| DNA polymerase III DnaE [Clostridium difficile QCD-76w55]
          Length = 774

 Score =  310 bits (794), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 184/650 (28%), Positives = 309/650 (47%), Gaps = 71/650 (10%)

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            + AK A+ D  R           + KLIP+ P   +    + + +  ++    +  V  +
Sbjct: 1    MGAKGAINDTARIWNKDTRFSSEISKLIPSRPNITIDEA-LKESTGLKQLYDGNLEVRDI 59

Query: 512  LEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP----MYRDVRSDLPVTQFNMKWIEKAG 567
            ++ ++K+EGL + +  HA GI+IG   ++   P      R+      VTQ+ M+  E  G
Sbjct: 60   IDKAKKIEGLLKSSGVHACGIIIGREAITNFCPQSLVTNRETGKKEWVTQYTMEECESIG 119

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESS 626
            L+K DFL LKT+T+L +S++ + +   +   ++ +P +D E Y  +    T G+FQ+ES 
Sbjct: 120  LLKMDFLALKTMTILNESIEDINESYGQKLAVNNLPVNDVEVYEHIFKGNTRGVFQIESP 179

Query: 627  GMRQALEGMQPDC----------------------------IEDIIALVSLYRPGPIDNI 658
            GM   ++ +  D                              E +IA +SLYRPGP++ I
Sbjct: 180  GMTGFMKNLFQDVPDFLNSISNSSLTKEQIEKKKEEFGDILFERLIAGISLYRPGPMEEI 239

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              Y N     E+I    P ++ +LK T G+IIYQEQV+ I   L+G+S  + D +R+AMG
Sbjct: 240  PNYINNMINPEQIHYDTPELESILKNTYGIIIYQEQVINIVIKLAGFSKGQGDWIRKAMG 299

Query: 719  KKIKEEMDKQKERFISG-----------------ASKNGISKTIAVNIFELLAKFADYGF 761
            KK  E + + +  FI G                    N IS+ +A + +  +  F+ Y F
Sbjct: 300  KKKDEILKEYEPYFIYGSGDAKDKVTKKPLNIVGCINNEISEDVAKSTWNKMKDFSKYAF 359

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSV 821
            NKSH   Y+++SYQTAW+  +YPV F+ +++ + + N  K K F     + NI ++PPS+
Sbjct: 360  NKSHGGGYSLLSYQTAWISHYYPVIFMKSNLNVYITNTNKCKAFLAYCSRKNITVLPPSI 419

Query: 822  NTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCSR-VDSKKLN 878
            N     F V +N I +    IK +G ++   I++        F + +DF  R V  +K +
Sbjct: 420  NKSNKKFSVENNCIRFGFQGIKNLGCSS-ELIIKERESERGLFKNFQDFIERMVKYQKTD 478

Query: 879  RRVLESLVFAGALDCF-GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK 937
            +RV+E+L+FAGALDCF   +R + L+ + +I + ++  +K   N   ++F  E  +   +
Sbjct: 479  KRVIENLIFAGALDCFKDSTRKEKLEIIPSILESSKLDKKKNINGQISLFDIEDFSGIKE 538

Query: 938  ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR------ 991
            I + K    N     E E+ V   Y S HPLD +  +L K  I    + ++         
Sbjct: 539  IVIPKLGEFNKDYLLEKEKEVANIYISAHPLDNFMDLLEKEDIVEIVDLISEDDEYNKKD 598

Query: 992  ---------GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     GN I +A +V   Q K +++          +   E +   F
Sbjct: 599  NENYLTDFVGNTIYVAGIVKDVQIKYSKRNKPFYIFNLEDKTGEIKCVCF 648


>gi|28557086|dbj|BAC57546.1| DNA polymerase III alpha-chain [Clostridium novyi]
          Length = 245

 Score =  310 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 72/245 (29%), Positives = 129/245 (52%), Gaps = 6/245 (2%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL  H+ YSLL+G+  +  ++++       ++AITD   +F  ++F +KA  AGI+PI
Sbjct: 6   FVHLHTHTEYSLLDGSGKIGGLIERAKELGMDSLAITDHGTMFGCVDFYKKAKEAGIKPI 65

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG ++ +  +      N           +VLLV    GY+ L+++VS+  + D      R
Sbjct: 66  IGSEIYVASKSMNIKRN---DRENKNHHLVLLVKNEIGYKNLMKIVSKAAI-DGFYYKPR 121

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           +   +L+E  +EGLI L+   +G +       + + A +  L +K +F D  Y+ LQ H 
Sbjct: 122 VDHEYLRE-HSEGLIALSACLAGEVSYNLLNGTKEKAREVALFYKDIFKDGFYLELQYHG 180

Query: 191 GYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              + R    +++L+   ++PLVATN+  ++ +ED ++HDVL+ +     +   DR R  
Sbjct: 181 IDKQLRVNEMLIELSRELDIPLVATNDVHYIKKEDAKSHDVLLCIQTGKTLDDTDRMRYE 240

Query: 250 PDHYL 254
           P ++ 
Sbjct: 241 PQNFY 245


>gi|256422251|ref|YP_003122904.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588]
 gi|256037159|gb|ACU60703.1| DNA polymerase III, alpha subunit [Chitinophaga pinensis DSM 2588]
          Length = 980

 Score =  310 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 225/1036 (21%), Positives = 419/1036 (40%), Gaps = 118/1036 (11%)

Query: 14   LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            L   + +S   G      ++   +      +A+T+ NN     +F      AGI+P+ G 
Sbjct: 3    LNCKTYFSYRYGTFPHELLVLTASELAVKTMALTNINNTSDIWDFVSACKRAGIKPVAGV 62

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++                        +LL    EG+ ++   +S  +L+ +     R+ L
Sbjct: 63   EI----------------RNEDTLCYLLLSRNNEGFFQINRFLST-HLIAKAPFPDRVEL 105

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
                                 +   + FN   +  + LLT         Y+ +Q     +
Sbjct: 106  ------------------GADVFVIYPFNKEWLQSEPLLTV------NEYMGVQ-TTEVN 140

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +     + Q        L+  +   F  +  Y  H +L A+  + ++S+++      +H 
Sbjct: 141  KLYGVDMQQWGSR----LLMRHPVTFQDKVHYNVHRLLRAIDKNIILSKQEDTHKAGEHE 196

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
                   + +     EA    +           +         +K     ++++   L  
Sbjct: 197  TFMPPATLLLA---FEAYPQIIINTFLLMEKCSLDMDYEEDKNKKHASASKEDDRQLLEK 253

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
             A  GL           G      R+R+  EL +I  + F+ YFLI  + +Q+A+     
Sbjct: 254  LATDGLLY-------RYGKTNTVARERVLKELKIINDLNFNAYFLITWEILQYARSRGF- 305

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
               GRGSGA S+ AY + ITD+DP+   L FERFLNP R S PDFDIDF    RD++I +
Sbjct: 306  FHVGRGSGANSIVAYCMQITDVDPIELDLYFERFLNPYRTSPPDFDIDFSWVDRDDIIDF 365

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            V  KYG E VA +  + + Q KA +R++G+   +P +++D L +                
Sbjct: 366  VFKKYGKEHVALLGMYTTFQYKATVRELGKVYGLPKTEIDLLAEGRLQSDDK-------- 417

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                            ++L  S  ++    H S H  G++I + P+              
Sbjct: 418  -------------VHAQILRYSDLIKDFPNHLSIHPGGMLISENPIHYYTATDLPP-KGF 463

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG---VKVDLSLIPFDDHETYH 610
              TQ +M   E   L KFD L  + L  ++ ++D + +     + +    +   D     
Sbjct: 464  YTTQIDMFVAENISLFKFDILSQRGLGHIKDTVDLVRKTRGIAIDIHDVELFKQDKRVAQ 523

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGK 668
             + +  T+G F +ES  MRQ L+ ++      ++A  S+ RPG   + ++  Y  R +  
Sbjct: 524  QIRSADTIGCFYIESPSMRQLLKKLRCSDYLTLVAASSIIRPGVGQSGMMQEYIYRYHNP 583

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK--EEMD 726
            +K   +HP +  +L+ET GV++YQE V+++A    G  ++E+D+LRRAM  K +  ++M 
Sbjct: 584  DKFEYLHPKMKELLQETYGVMVYQEDVIKVAHHFGGLDMAESDILRRAMSGKYRGTKQMQ 643

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
            + +E+F       G    I+  ++  ++ FA Y F+K+H+A++AV SYQ+ ++KT+YPVE
Sbjct: 644  RLEEQFFLNCKARGYDPGISREVWRQISSFAGYSFSKAHSASFAVESYQSLYLKTYYPVE 703

Query: 787  FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
            F+ A +            + Q   +    +  P +N       + ++ +Y     IK + 
Sbjct: 704  FMVAVIN-NFGGFYNRALYFQQLIKHGATVYNPCINNSDYLTSIKNDIVYVGFIHIKDLE 762

Query: 847  TTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I+E    +  +  L+DF  R    ++    L +L+   AL   G ++ +LL   
Sbjct: 763  RALMEKILEERDRNGAYLHLQDFIERT---QVPPEQLNTLIKVNALRFTGKTKGELLWEA 819

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
            + +    Q     R    +++F   + +F     L      N       +  +LGF    
Sbjct: 820  NTL----QKTNTRRIPAGQSLFQEPEISF----QLPALKQ-NRLKDMMQDIELLGFTLEN 870

Query: 966  HPL------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR-IGWV 1018
              +      D Y+  L         +    +    +     ++  +   T+K    + + 
Sbjct: 871  --MFELVDADPYQHKL-------AADIPGCVH-QTVTCLVYLICTKDTYTKKNKEVMHFG 920

Query: 1019 TFSEPAKE-YEANFFP 1033
            T+ +   +  ++  FP
Sbjct: 921  TWLDVKGDWVDSVHFP 936


>gi|167470458|ref|ZP_02335162.1| DNA polymerase III, alpha subunit [Yersinia pestis FV-1]
          Length = 353

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 114/359 (31%), Positives = 179/359 (49%), Gaps = 22/359 (6%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + + P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A  
Sbjct: 12  MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHG 70

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGI+PIIG    +          Q +     +  + +L    EGYQ L  L+S  Y    
Sbjct: 71  AGIKPIIGADFYV----------QSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY 120

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
           G     I   WL +   EGLI+L+GG  G + +     +    ++ L  +++ F D  Y+
Sbjct: 121 GAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGKFLLRGNQVQVDQCLAFYQEHFPDCYYL 179

Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            L R    D        V LA    LP+VATN+  F+ E D++AH++ +A+     +   
Sbjct: 180 ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 239

Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            RP+  +P  ++++  +M  +F+D+PEAL N+VEIA+RC+  +++       +   +   
Sbjct: 240 KRPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGE-----YFLPQFPT 294

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGY---HAQDYRQRLDFELNVIARMKFSGYFL 358
            +   E+ L  KA  GLE RL               +Y +RLD EL VI +M F GYFL
Sbjct: 295 GEMSTEDFLVEKAKQGLEERLEFLFPDPEVRLQKRPEYDERLDIELQVINQMGFPGYFL 353


>gi|167630340|ref|YP_001680839.1| DNA polymerase iii, alpha subunit, gram-positive type [Heliobacterium
            modesticaldum Ice1]
 gi|167593080|gb|ABZ84828.1| DNA polymerase iii, alpha subunit, gram-positive type [Heliobacterium
            modesticaldum Ice1]
          Length = 1245

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 182/990 (18%), Positives = 343/990 (34%), Gaps = 202/990 (20%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L  H+  S ++G +S  +++ + A    PAIAITD   + +  E  + +    I+ I 
Sbjct: 342  VELHAHTKMSSMDGLVSAKDLVARAAYWGHPAIAITDHGVVQAFPEAFEASRKLKIKVIY 401

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +     ++              I++LV    G + L +L+++ +L +  ++  RI
Sbjct: 402  GVEGYL-----VEEMPAPNGEKLKSWHIIILVKNMTGLKNLYKLITKSHL-EYFERRPRI 455

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L+E   EGLI+ +   +G +  A    +S    KR+  F        YV +Q    
Sbjct: 456  PRKILEE-HREGLILGSACEAGELFSAMRKGASDDDLKRIAAFYD------YVEIQPIGN 508

Query: 192  YD--------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
                            R    + +++A     P+VAT +  FL   D E +  ++     
Sbjct: 509  NLFLYKKGEVPSEEALRDLNRRALRIADEVGKPIVATGDVHFLEPRD-ECYRRILMAGKG 567

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
               +    P                  +D   A    ++  R  + +++   PI   F  
Sbjct: 568  FADADDQAPLYLRTTDEMLAEFHYLGEAD---AKRCVIDNPRLIADMVEEIKPIPDEFFP 624

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               D      E+++R     G+   L    +      +  R+R+D EL+ I    FS  +
Sbjct: 625  PIIDG----AEDQIREMT-EGMAAELYGDPL-----PEVVRKRVDKELHSIISNGFSVLY 674

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ +  +   VG  RGS   S+ A    IT+++PL                   
Sbjct: 675  LIAHKLVKKSNDDGYLVG-SRGSVGSSLVATFTGITEVNPLPPHYRCGHCKHSEFIMDGS 733

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL  +   +PD D++F  + +    ++ + 
Sbjct: 734  IGCGADLPDKNCPRCGQLLIKDGHDIPFETFLGFEGDKVPDIDLNFSGEYQPRAHKFTEE 793

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T  ++  + A   V               K   ++   PV        +
Sbjct: 794  LFGKDYVFRAGTIATIAERTAYGFV---------------KNYLDEKKIPV------RSA 832

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAG--IVIGDRPLSQLVPMYRDVRSDL- 553
                                   G+ R    H  G  +V     +    P+ R       
Sbjct: 833  ELSRLVS-------------GCTGVKRTTGQHPGGLMVVPRYGDIHDFTPLQRPADDTKS 879

Query: 554  -PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
              +T         + L+K D LG    T+++     + +    V+   IP DD +T  L 
Sbjct: 880  ETITTHFDYHSISSRLVKLDILGHDDPTVIK-----MLEDLTGVNAKGIPLDDAKTMSLF 934

Query: 613  TTKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             +                T GI +  +  +RQ LE  +P    D++ +            
Sbjct: 935  CSTEALGVTPEQIRSNTGTYGIPEFGTKFVRQMLEDTKPKTFSDLVRISGFSH-----GT 989

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             V+ N             LI   + +T   I  ++ +  I  +  G    +A  +   + 
Sbjct: 990  DVWLNNAQ---------DLIKSGICKTGEAISTRDDI-MIYLMYRGLPPKKAFSIMEGVR 1039

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K    + D +         +N + +    +  ++      Y F K+HA AY  ++++ AW
Sbjct: 1040 KGKGVKADDE-----QLMRENKVPEWYIESCKKI-----KYMFPKAHAVAYVTMAFRIAW 1089

Query: 779  MKTHYPVEFLAASMTLEMDNVE---------------------------------KIKKF 805
             K +YP  F A+  T+  D  +                                  I + 
Sbjct: 1090 FKVYYPEAFYASFFTVRADEFDADLICQGSAHVRRTIEEIERKGNEATAKEKNLQTILEL 1149

Query: 806  CQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
              +  +  I +   +++      F +    +   + ++ GVG T A++IM A  + PF S
Sbjct: 1150 ALEMYERGIHLQRVNLDRSHATKFIIEPEGLLPPIGSLPGVGATAAQNIMAAREEGPFSS 1209

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +ED   R    ++++ V+E+L   G LD  
Sbjct: 1210 IEDLRVR---SRVSKTVIEALQKHGTLDGM 1236


>gi|162417899|ref|YP_001604616.1| DNA polymerase III, alpha subunit [Yersinia pestis Angola]
 gi|162350871|gb|ABX84820.1| DNA polymerase III, alpha subunit [Yersinia pestis Angola]
          Length = 1174

 Score =  307 bits (785), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 262/971 (26%), Positives = 424/971 (43%), Gaps = 104/971 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L V + +SL E AL   N +         A+   D+ N+ S +   + A    +  I G 
Sbjct: 4   LMVRTDFSLGESALKAENAVKIARDAGYTAVISADSMNIASVIPLQRAA-GDDMAVICGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTV---------PSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +L++      +   +                      L+   +GY+ + EL++     +Q
Sbjct: 63  KLNVVDDPTYEHRARLAKESERYMESLVRDRSYCFTALIKNEQGYRDVCELMTLANKREQ 122

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                R+ L  L     +G I+L    +  I   F         K + T     G D  Y
Sbjct: 123 FYFVPRLALDQLAAAYAKGNIIL---LTSDIGSVFQRRDFA---KIIGTLVTAGGRDNFY 176

Query: 184 VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
             +  H   +      + +++A   ++  VA   + + + +D +  D+   V ++  + Q
Sbjct: 177 SVVYPHPTPFYDQINVRAMKVASALKIEPVAFYPAYYEAVDDADIKDIAHMVTNNIKIDQ 236

Query: 243 KDR-----PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             R      R    +  ++  E +  FS   +        +     I++         + 
Sbjct: 237 PHRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIEACTWRW-HELP 295

Query: 298 KECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                +  +E   L   AVAGL  R      G        + Y  RL +E++ + R+ F 
Sbjct: 296 PALPKMADDEPATLMKLAVAGLRKRLTTKEFGYTPPASEHRVYVDRLKYEMDTLTRLGFC 355

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
           GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+R  LLFERF+NP+R+ 
Sbjct: 356 GYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFINPERLD 415

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +ALRD  R     Y     
Sbjct: 416 LPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARI----YGVDAA 471

Query: 475 LCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
              +            ++ +   +               + + KL+ L R    HAAG++
Sbjct: 472 DMAVSKEFKNLEDDSLSLEELREQLASLDKYATKYPEAFKAACKLQSLMRGFGRHAAGMI 531

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
           +   PL +  P+      +     F+ ++ E  GLIK D LGL TL LL  +  ++ +  
Sbjct: 532 VAGVPLVERTPVELR--GNARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRYIKEST 589

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ----PDCIEDIIALVS 648
           G  ++L  IP DD +         T G+FQLES  MR+ L+ +     P   + ++A  +
Sbjct: 590 GEDINLDAIPLDDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTVVATTA 649

Query: 649 LYRPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
           L+RPGPI + ++ +     K      S+HP++D +  ET GVI+YQEQ M   +LL+G++
Sbjct: 650 LFRPGPIQSGMLDDYVSVAKGFMAPQSLHPVLDELTAETNGVILYQEQTMNATRLLAGFT 709

Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGAS----------------------------- 737
           ++EAD +R+A+GKK  E+M    E+F+  A                              
Sbjct: 710 MAEADGVRKAIGKKDMEKMKSMGEKFVVQAQAGWIDVEMEDGTTQRIHRAEHFKCEDGAL 769

Query: 738 -----------------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
                                  + G+S+T A  I++   K   Y FNKSH  AY++ISY
Sbjct: 770 RTVEEALEAGVKLPMAAVRVTGSQPGLSETKAKEIWDAFEKNGAYQFNKSHPVAYSLISY 829

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---- 830
           Q+ W+KTHYP EF AA++T  +   +K +   +DA  + I ++PP VN      ++    
Sbjct: 830 QSMWLKTHYPAEFFAAALT--ILGEDKHQGLVKDALTYGIHVLPPDVNVSSNRIEIRTLE 887

Query: 831 GDNRIYY-SLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCSRVDSK--KLNRRVLESL 885
             +++ Y   +A+KG      + IM A       F+SLE F   VD +    N RV ESL
Sbjct: 888 DGSQVLYAPFSAVKGCSENGCQAIMRAREKVGGKFESLEQFEEAVDKRACACNSRVRESL 947

Query: 886 VFAGALDCFGY 896
              GA      
Sbjct: 948 QKVGAFASIEP 958


>gi|319937869|ref|ZP_08012269.1| hypothetical protein HMPREF9488_03105 [Coprobacillus sp. 29_1]
 gi|319806775|gb|EFW03414.1| hypothetical protein HMPREF9488_03105 [Coprobacillus sp. 29_1]
          Length = 734

 Score =  307 bits (785), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 208/638 (32%), Positives = 335/638 (52%), Gaps = 35/638 (5%)

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D DF    R  ++ YVQ KYG++ V+QI+T+  L  K+ +R+VG+ L +PY   D L 
Sbjct: 2    DIDTDFQNQYRHVIVEYVQAKYGYDHVSQIVTYNMLGLKSIIRNVGKVLGIPYLVTDELS 61

Query: 477  KLIPNDPAHPV---------------SLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
            K +P      V               +L+ +     F+E   +   V +L +I +  +GL
Sbjct: 62   KNVPKKIRKFVYLEEEDREEEQEIEPTLEDLKTIPFFKERIDSSEDVAQLFKIGKLFDGL 121

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
                  HA G++IG  PL Q V +       + VTQF  K  E  GL+K DFLGL TL +
Sbjct: 122  PSSTGKHACGVIIGAHPLHQYVGLM--EVDGVLVTQFEKKASESIGLLKMDFLGLITLDI 179

Query: 582  LQKSLDFLAQRG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
              ++L  + +   +++DL  IP DD +T+ LL    +  +FQLES GMR  L+ MQP  +
Sbjct: 180  EVETLRLIKKNKGIEIDLDKIPLDDTKTFELLQRGQSGKVFQLESQGMRNLLKKMQPTDM 239

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
              IIA+ +L+RPGP+  I  Y        K+   HPL +   KET G+++YQEQ+MQ+ Q
Sbjct: 240  SHIIAIAALFRPGPMQFIDNYIEGMKTPSKVKYPHPLYENSAKETFGILVYQEQIMQVVQ 299

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
             ++G+SL EAD+LRR +GKK K+ +D+ +E F      NG+ +  A  ++ ++ KFA+YG
Sbjct: 300  DMAGFSLGEADILRRGIGKKDKQYIDQMEEEFSKRCVDNGVPEKTAKEVYAMIKKFAEYG 359

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPS 820
            FNKSH+AAYA+I+Y+TA++K +YPVEF+AA+ T+  DN +K+     + +   I+I+P S
Sbjct: 360  FNKSHSAAYALIAYETAYLKAYYPVEFMAANCTINSDNKDKLISCLAEIKAMGIEILPSS 419

Query: 821  VNTPCVDFKVGD----NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            +      F V      + I Y    I G+G   A+ I   S     ++  DF S+  + +
Sbjct: 420  IRFSQTKFTVEKSEGQSAIRYGYIGIDGIGEDIAKTIETLSNC---ETFYDFISQCPNIR 476

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD 936
             N   + +L+++G  D FG  R ++ +   +I +  ++  + ++    +I     G    
Sbjct: 477  NN--QITNLIYSGTFDIFGC-RKKMREIAPSILETVKYHNQIKSIYKSSILDGLSGEAFY 533

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
              T           + +NE+RVL    SGHPL+  + +L+        +      G++I+
Sbjct: 534  DGT-----EYGFKEKLDNEKRVLHCCISGHPLEQIRGVLKGYDTL-ISDIQDLNDGDDIQ 587

Query: 997  LAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
            +   + S QQ  T+K G  + ++   +     EA  FP
Sbjct: 588  ILCQINSIQQIFTKKSGEPMAFLKIEDEYDFCEAIVFP 625


>gi|239502677|ref|ZP_04661987.1| putative DNA polymerase III alpha subunit [Acinetobacter baumannii
           AB900]
          Length = 785

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 216/767 (28%), Positives = 368/767 (47%), Gaps = 37/767 (4%)

Query: 16  VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL 75
           V S +S+ +  L+++ I++        ++AI D  +L + ++FS KA  A I+P+ GC+L
Sbjct: 8   VQSDFSIGKSLLTVDKIVEAAKGLGYSSVAIVDDMSLHALVDFSNKATKANIKPVFGCRL 67

Query: 76  DIDMQDNLKMTNQGKTPFPTVPSIV---LLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            +      +              +    + V + +G + L +L++     +Q     R  
Sbjct: 68  RVYDDSKYRKPPASSGIAEKRNLMFCPKVYVKSEKGIKGLFKLLTDANSKEQYYYHSRTD 127

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
           L  L ++  E +++ TG   G              E+ L   K  FGD LY+        
Sbjct: 128 LDALCKL--EDVVVTTGDMYGLFSH-------PDHERILKVLKARFGDDLYIEFSPINTP 178

Query: 193 DRYRESQVVQLA-YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
              R + +  LA    ++  V T    +L  ED +  DVL A+A +T +    RP     
Sbjct: 179 LFDRLNYLGYLAYEREKIKTVVTYPFNYLENEDADTLDVLSAIATNTQLDLHYRPIQYVK 238

Query: 252 HYLKNRSEM---VSIFSDLPEALENTVE----IARRCSFILQVHAPILPRFIEKECDDIQ 304
            +     +     +  +    A    V            I ++       F ++     +
Sbjct: 239 DFGFKEPKFILDHTKAAIQRMAKYERVNSAEAWKEGLKNISELVDKCQYIFEKQPVSLPK 298

Query: 305 KEEENE--LRNKAVAGLEVRLAQGAIAKGYHAQD----YRQRLDFELNVIARMKFSGYFL 358
              +    L  K + G + R ++  +       +    Y+ RL +EL+++ +M F  YFL
Sbjct: 299 LSTDEFKTLCAKCLEGWKKRFSKEILGYKPTKAELDTVYKSRLGYELSILKKMGFESYFL 358

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           +V D + W+K N + VGPGRGS  GS+ AY L ITD+DP+RF L+FERF+NP+R+ +PD 
Sbjct: 359 LVEDLVMWSKNNGVIVGPGRGSVGGSLVAYLLGITDVDPIRFGLIFERFINPERLDLPDA 418

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D+DF    R +VI Y+  KYG + VA I  + +L + +ALRD GR   +  +Q+     +
Sbjct: 419 DLDFASSGRYKVIDYLVEKYGEDYVAGISNYSTLASASALRDTGRISGLNNTQLSATKLV 478

Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
           +           +        + R   P    + + + KL G  +    HAAGIV+   P
Sbjct: 479 LKEHGTSLDLNTSADAVPELDKFRNEHP---VIWKHATKLAGTMKSFGQHAAGIVVAGEP 535

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-D 597
           +     +    +S  PV  ++ + +E  GLIK D LGL TL +L  + D++ +R     D
Sbjct: 536 IVNRAVLETRGKS--PVVNWDKRVVEDWGLIKMDLLGLATLDVLNIACDYVKERHGIELD 593

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMR---QALEGMQPDCIEDIIALVSLYRPGP 654
           L  IP DD +T   L    T+G+FQLESSGM+   + +        +DI A+ +LYRPGP
Sbjct: 594 LLKIPLDDEKTMQALGRGETVGVFQLESSGMQQLLKNISNGGAVTFDDICAVTALYRPGP 653

Query: 655 IDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           +D+ +   Y + + G +++   H +++P+L +T GV++YQEQ M +A+ L+G+S++E+D 
Sbjct: 654 MDSGMLDDYVDLRKGLKEVTYAHEVLEPVLSDTYGVVVYQEQTMALARKLAGFSMAESDH 713

Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
           LR+A+GKK  ++M + K +FI GA    +   +       + +   +
Sbjct: 714 LRKAIGKKDLKKMAELKPKFIDGAKAGFVEVELEDGTKLKVHRMEKF 760


>gi|9630258|ref|NP_046685.1| putative DNA polymerase [Bacillus phage SPBc2]
 gi|16079093|ref|NP_389916.1| DNA polymerase; phage SPbeta [Bacillus subtilis subsp. subtilis str.
            168]
 gi|221309940|ref|ZP_03591787.1| hypothetical protein Bsubs1_11236 [Bacillus subtilis subsp. subtilis
            str. 168]
 gi|221314262|ref|ZP_03596067.1| hypothetical protein BsubsN3_11157 [Bacillus subtilis subsp. subtilis
            str. NCIB 3610]
 gi|221319184|ref|ZP_03600478.1| hypothetical protein BsubsJ_11083 [Bacillus subtilis subsp. subtilis
            str. JH642]
 gi|221323460|ref|ZP_03604754.1| hypothetical protein BsubsS_11212 [Bacillus subtilis subsp. subtilis
            str. SMY]
 gi|81555926|sp|O31902|YORL_BACSU RecName: Full=Probable DNA polymerase yorL
 gi|2634427|emb|CAB13926.1| putative DNA polymerase; phage SPbeta [Bacillus subtilis subsp.
            subtilis str. 168]
 gi|3025611|gb|AAC13106.1| putative DNA polymerase [Bacillus phage SPbeta]
          Length = 1305

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 188/1019 (18%), Positives = 386/1019 (37%), Gaps = 125/1019 (12%)

Query: 15   QVHSSYS---LLEGALSLNNILDKIAADQQPAIAITDTNNLFS---ALEFSQKACAAG-- 66
              H+  S   LL+   S+  +L      +   +AITD   L +   A+   ++    G  
Sbjct: 5    HCHTDRSNIRLLDSTNSVKELLKTAVKMEYKGLAITDHEVLSAHLDAIRTVREMKKKGDM 64

Query: 67   ---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
                + I+G +  + +    ++ +  K+     P  ++L    +G+++L  L S+ +  +
Sbjct: 65   PEDFKLILGNEAYL-VDSLEEVRDNYKSGVTKFPHFLMLAMDPKGHEQLRILSSQAW-EN 122

Query: 124  QGK-----QSVRI--CLSWLQEIGTEGLIMLTGGSSGPIDRAFFF-------NSSQ---- 165
                    +   +   +  L       +I  T      ++              SQ    
Sbjct: 123  SFYTGTMERVPTVKKDVEELLSKDPGHIIATTACLGSEVNIHLLKIKAFEETGDSQSIKQ 182

Query: 166  ---VAEKRLLTFKKLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFL 220
                  + +    ++FG D+ ++ LQ     ++     +++ +A  ++L ++ T ++ +L
Sbjct: 183  HKLKIHEFITWCIEVFGKDKFFIELQPALSEEQIYCNKKLIDIANGYDLQMIVTTDAHYL 242

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD-LPEALENTVEIAR 279
              ED   H   +                   +  +    M  I  + + +A++NT+ I  
Sbjct: 243  RPEDRAIHQAFLNAKDGEREVDSFYEACFVQNVDEIHERMDYIDKEVIDQAIKNTMLIGE 302

Query: 280  RCSFILQVHAPILPRFIEKEC-------------------DDIQKEEENELRNKAVAGLE 320
                    H PI+P+                          +   E++  L      G E
Sbjct: 303  MIEDYTIEHEPIIPKMELPNFKLRHLFKPAYDQYEYIKKMSESADEQDRYLLKLIEDGFE 362

Query: 321  VRLAQGAIAKGYHAQD-----YRQRLDFELNVIARMKFSGYFLIVADFIQWA----KKNN 371
             +L    + +    +            +E++       S Y++ V + I          +
Sbjct: 363  EKLKTSELTREAFHKILNRINVELGELWEISQKLNQSMSSYYITVREIINIIWDDECGGD 422

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              VG  RGS AG +  Y L  T I+P+++ L   R ++  R  +PD DID    +R +++
Sbjct: 423  SLVGAARGSAAGYLVNYLLDNTQINPMQYDLPHWRHIHKSRPDLPDIDIDTEGSKRQKIL 482

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQ 490
            + ++ ++G +RV QI TFG+  +K+AL+   R L +       L  +IP +         
Sbjct: 483  KALRERFGDKRVLQIATFGTEGSKSALQTACRGLGIDNDISQYLSGMIPFERGSNWPLKH 542

Query: 491  AIADDSR-----FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                D        +E          L E + K+EGL    S+HAAG++I +   ++   M
Sbjct: 543  CFYGDKETGRKPIKEFIREVEQYPNLKETALKIEGLTNKRSSHAAGVIIFNDEYTKSNAM 602

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-------------FLAQR 592
             +       +TQFNM   E  G +KFD L ++ L  ++ +LD                  
Sbjct: 603  MKTP-KGAYITQFNMGDSEAMGSVKFDLLTIEALDKIRVTLDQLIENNEIEWQGSLKETY 661

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +   +I ++D + + +      + +FQ  +    Q++  ++P  + +     SL R 
Sbjct: 662  NKYIHPDVIEYEDDKLWEMAGNGEIMDLFQFSTEVGHQSVVKVKPKNLLEAAVTNSLMRL 721

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPL-------------IDPMLKETQGVIIYQEQVMQIA 699
                     +     K  +   +               ++  LK+  GV   QE VMQ+ 
Sbjct: 722  MSDGEEQPVDTYVKYKNNLNKWYEEMTRYGLSEKEIRVMERHLKDIYGVADTQEVVMQMV 781

Query: 700  Q--LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
                ++ + + E++ LR+++ KK ++ + + +E F     + G S  +   ++ +  K  
Sbjct: 782  MDKDIANFDIKESNYLRKSIAKKKEDVLKEVEELFFKKGKEIGTSDNLLNYVWNVQFKRQ 841

Query: 758  -DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM-----------------DNV 799
              Y F+  H  AY++I+ Q   +   Y   +   +                       N 
Sbjct: 842  FGYSFSLLHTLAYSIIALQELNLNYRYNPLYWNTACLTVNSGGIDTEDTKDNKKTAATNY 901

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTPCVDFK--VGDNRIYYSLAAIKGVGTTTARHIMEAS 857
             K+     + RQ  I+I  P +N     F+  + +N I + L  + G+G     HI+   
Sbjct: 902  GKVASAIGNIRQRGIKIDLPDINKADFGFRTDINNNSILFGLKGMNGIGDDVIHHIV--- 958

Query: 858  ADKPFDSLEDFCSRVDSKK-LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
             ++P+    DF  R+     + +  +  L+  G  D FG +R +++++  ++    +  
Sbjct: 959  LNRPYSDFNDFIERMFKSGIIKKGQVIQLIKGGCFDSFG-NRQEIMKAFISLISEPKSK 1016


>gi|254247156|ref|ZP_04940477.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184]
 gi|124871932|gb|EAY63648.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184]
          Length = 658

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 166/628 (26%), Positives = 274/628 (43%), Gaps = 48/628 (7%)

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
            +I+++  KYG +R A      + + +  LR+ G+AL +    VDR+ K           L
Sbjct: 1    MIQHIYKKYGKDRAALAAAVSTYRPRGVLRETGKALSVDPMLVDRVAKGHRWFDGSRDLL 60

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
            Q  A          A P +    E++ +L    RH S H+ G VI    L++LVP+    
Sbjct: 61   QQFAST----GLDPATPIIQTWAELAGRLLNFPRHLSQHSGGFVISRGKLTRLVPVENAA 116

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL------AQRGVKVDLSLIPF 603
                 V Q++   +E  GL+K D L L  L+ L ++ D        A+ G    L  IP 
Sbjct: 117  MDGRRVIQWDKDDLEALGLMKVDVLALGMLSALHRAFDLRTAWRGPAKDGKPFTLKHIPQ 176

Query: 604  DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
            DD  TY ++    T+G+FQ+ES      L  ++P    D++  VS+ RPGPI    V+  
Sbjct: 177  DDKATYDMICRADTVGVFQIESRAQMSMLPRLRPRNYYDLVVQVSIVRPGPIQGGAVHPY 236

Query: 664  RKNGKE-------KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             K  +        ++      +  +L  T GV I+QEQVMQIA + +G++  EAD LRRA
Sbjct: 237  LKRRRIVAGEEKGEVTYPSDALKEVLVRTLGVPIFQEQVMQIAIVAAGFTPGEADDLRRA 296

Query: 717  MGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M     K  ++K +++ ISG  +   ++  A  IFE +  F +YGF +SHAA++A ++Y 
Sbjct: 297  MAAWKRKGNLEKYQDKIISGMLERNYTREFAEQIFEQIKGFGEYGFPESHAASFAKLAYA 356

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---- 831
            ++W+K H P  FLAA +  +        +  QDA++  ++++P  V     +  +     
Sbjct: 357  SSWLKCHEPAIFLAALLNSQPMGFYPPSQLVQDAKRHRVKVLPIDVTQSGWEASLEALPD 416

Query: 832  ------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                     +   L+ ++G+    AR I  A    PFDS++    R    +L RR LE+L
Sbjct: 417  QPPPHGQPAVRLGLSLVRGLSEAAARRIEAARTAGPFDSVDSLARRA---QLERRDLEAL 473

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSV 945
              A AL      R   L             +        ++ A       D++       
Sbjct: 474  AAANALATLAGHRRDALW------------QAVAAAPERDLLAAAP---IDEVEQPALGA 518

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ 1005
             + +     +    G   + HP+ + +P LR   +    E      G   R   +V+++Q
Sbjct: 519  PSEADDILADYHTTGLTLNRHPVALLRPALRAQRLSSAAELRDRPDGRLARACGLVIARQ 578

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               T KG  + ++T  +          P
Sbjct: 579  MPGTAKG--VMFMTLEDETGCVNVIVRP 604


>gi|213609772|ref|ZP_03369598.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 603

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 287/608 (47%), Positives = 398/608 (65%), Gaps = 21/608 (3%)

Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
           T+   K     +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++          
Sbjct: 2   TLDDPKRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYF-----L 56

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            +        E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F 
Sbjct: 57  PQFPTGDMTTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFP 116

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
           GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+S
Sbjct: 117 GYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVS 176

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           MPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR
Sbjct: 177 MPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDR 236

Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           + KL+P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI
Sbjct: 237 ISKLVPPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVI 295

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
               ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  
Sbjct: 296 APTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRA 355

Query: 595 KV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
           K      D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L
Sbjct: 356 KNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVAL 415

Query: 650 YRPGPIDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
           +RPGP+ + +V       +   +     +   H  + P+L+ T G+I+YQEQVMQIAQ+L
Sbjct: 416 FRPGPLQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVL 475

Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
           SGY+L  AD+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFN
Sbjct: 476 SGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFN 535

Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           KSH+AAYA++SYQT W+K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N
Sbjct: 536 KSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDIN 595

Query: 823 TPCVDFKV 830
           +    F V
Sbjct: 596 SGLYHFHV 603


>gi|330990198|ref|ZP_08314176.1| Error-prone DNA polymerase 2 [Gluconacetobacter sp. SXCC-1]
 gi|329762744|gb|EGG79210.1| Error-prone DNA polymerase 2 [Gluconacetobacter sp. SXCC-1]
          Length = 632

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 174/635 (27%), Positives = 274/635 (43%), Gaps = 42/635 (6%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
             +V LQV ++YS L GA   + +  +       AI ITD N+L   +   + A   G++
Sbjct: 2   SGYVPLQVATNYSFLRGASHPDELFARAGELGLRAIGITDHNSLAGIVRAHRAAGEHGVR 61

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++GC+LD++                 +P ++   +    Y RL  L++       GK  
Sbjct: 62  LVVGCRLDLED----------------MPPVLAYPTDRAAYGRLCHLLTLGRKR-AGKGG 104

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
             +    L+  G   L++L   +      A        A         L G   YV L  
Sbjct: 105 FSLTWRDLEREGAGLLLILLPDAPDATLSAALARMEAHART-----GGLPG---YVALVR 156

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRP 246
           R+R  D  R +++  +A T  L  V T + L+ +   +   DVL  + H   V Q  DR 
Sbjct: 157 RYRPGDAARLARIADMAMTAGLRPVVTGDVLYHNAGRHILQDVLGCIRHGCTVDQLGDRR 216

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +L    E+   ++    A+  + EIA  C F L   A   P   +   +  Q+ 
Sbjct: 217 ETCSGRHLVAEREIREDYAGHEAAIARSAEIAALCRFSLDDLAYQYPDETDASGNTPQET 276

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               +R             G             +L  EL++IA + ++ YFL V   ++ 
Sbjct: 277 LAALVRTHLKDRYPAGAPDG----------VLAQLRHELDLIASLDYAPYFLTVNTIVRH 326

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           A++  I V  GRGS A S   Y L IT IDP+R  LLFERF++ +R   PD D+DF  DR
Sbjct: 327 ARQQGI-VCQGRGSAANSAVCYVLGITAIDPVRSGLLFERFVSAERREPPDIDVDFESDR 385

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
           R+EVI+++   YG +R A   T    + K ALRDVG+AL +P    D    L  +     
Sbjct: 386 REEVIQWIYAHYGRDRAALCATVMRYRRKGALRDVGKALGVPE---DVTATLSRHLTGLS 442

Query: 487 VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMY 546
                +AD +R     L DP +   L ++ +L G  R   TH  G V+    L  LVP+ 
Sbjct: 443 SDGDTLADRARELGLNLDDPRLRLTLHLAGELIGFPRQLGTHPGGFVLTHDRLDDLVPIE 502

Query: 547 RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDD 605
                D  +  ++   I+    +K D LGL  L  ++++   L    G ++D++ IP +D
Sbjct: 503 PAAMEDRQIIVWDKDDIDHLRFMKVDVLGLGMLGCMRRAFALLETVHGTRMDMASIPPED 562

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
             TY ++    T+G FQ+ES      L  ++ +  
Sbjct: 563 PATYRMIARADTIGTFQIESRAQMSMLPRLKRNHP 597


>gi|114566429|ref|YP_753583.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei str.
            Goettingen]
 gi|114337364|gb|ABI68212.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei str.
            Goettingen]
          Length = 1212

 Score =  305 bits (780), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 172/990 (17%), Positives = 326/990 (32%), Gaps = 206/990 (20%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L  HS  S ++G   ++ ++ + A  Q PAIAITD  ++ +  E  Q A    I+ I 
Sbjct: 313  IELHAHSKMSAMDGLTEVSMLVKRAAEWQHPAIAITDHGSIQAFPEAYQAAKKYKIKVIY 372

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +  +D  +              IVLL     G + L  LVS  Y+ D   +  +I
Sbjct: 373  GVEAYLVEEDKKERP----------YHIVLLALNQNGLKNLYHLVSISYM-DYFYRYPKI 421

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                L +   EGL++ +   +G + +A       +  E+    +        Y+ +Q   
Sbjct: 422  PRQQLIKK-REGLLLGSACEAGELFQAMVRGAKEKEIEEIAGFYD-------YLEIQPLD 473

Query: 191  GYD--------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
              D              +    ++++L    + P+VAT +  FL         ++ A   
Sbjct: 474  NNDFLVKEGSVKSREELQEINRRIIRLGQKLQKPVVATGDVHFLDPHHEIFRRIIQAGQG 533

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ-VHAPILPRF 295
                                      + +++    E         +  L       +   
Sbjct: 534  ---------YEDAESQAPLYFRSTDEMLAEMDYLSEEEARKVVIDNPALIAEMIEDIRPV 584

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
             E       +    E+   +                        R+  ELN I    FS 
Sbjct: 585  PEGFYPPKIESAAEEVTRISWDKAHSLYGD------ELPPIVESRIMKELNSITHHGFSV 638

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------- 399
             +LI    ++ + ++   VG  RGS   S+ A+   IT+++PL                 
Sbjct: 639  LYLIAHKLVEKSNQDGYIVG-SRGSVGSSLVAFLTGITEVNPLAPHYLCPFCRFSDFVVD 697

Query: 400  -------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                     F + FE FL  +   +PD D++F  D +    +YV
Sbjct: 698  GSANCGADLPERSCPDCGGKMHQDGFDIPFETFLGFEGDKVPDIDLNFSGDYQSRAHQYV 757

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            +  +G E V +  T  ++  K A   V + ++                            
Sbjct: 758  EELFGQENVYRAGTISTIAQKTAYGFVKKYVEN--------------------------- 790

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG--IVIGDRPLSQLVPMYRDVR-- 550
                   +  D S   +  + + + G+ R    H  G  +V  DR + +  P+       
Sbjct: 791  -------KQIDLSNAEVNRLVKGITGVRRTTGQHPGGLIVVPQDRDILEFTPLQHPADNK 843

Query: 551  -SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP------- 602
             S +  T F    I +  L+K D LG    T+L++  D   ++   + L+          
Sbjct: 844  DSGVITTHFEYHAIGE-QLVKLDILGHDDPTVLKELEDLTGRKAFSIKLNEKETMKLFSG 902

Query: 603  --FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
                  E   +L+T GT GI +  +  +RQ LE  +P    +++ +  L   G    +  
Sbjct: 903  VEPLGLEAADILSTVGTYGIPEFGTRFVRQMLEATRPTTFSELVRISGLSH-GTNVWLNN 961

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
              N              +      +   +I     +    +  G    +A  +   + K 
Sbjct: 962  AQN--------------LIKNGTASLSEVICTRDDIMSYLIQKGLDKKQAFKIMENVRKG 1007

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                            +   +      +  ++     +Y F K+HA AY  ++++ A+ K
Sbjct: 1008 N-----GLNSGECELMAGQNVPSWYIDSCQKI-----EYMFPKAHAVAYVTMAFRIAYFK 1057

Query: 781  THYPVEFLAASMTLEMDNVE---------------------------------KIKKFCQ 807
             ++P++F A+  ++  ++ +                                  + +   
Sbjct: 1058 VYHPLQFYASFFSIRAEDFDSQTILAGYEALKKRIQEIEKAGLSASQKDKKLLPVFEVAM 1117

Query: 808  DARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            +         P  +       F V DN +    +A+  VG   A+ I+E+     F S+E
Sbjct: 1118 EMYARGFTFRPVDIYKSDASKFLVVDNALLLPFSALPNVGAAAAQGIIESREGGSFISVE 1177

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            DF  R    +LN+  +E L      DCF +
Sbjct: 1178 DFQQR---SRLNKTAMEVLRN---FDCFNH 1201


>gi|31795434|ref|NP_857887.1| putative DNA polymerase III alpha subunit [Yersinia pestis KIM]
 gi|40787972|ref|NP_857689.2| DNA polymerase III alpha subunit [Yersinia pestis KIM]
 gi|52788118|ref|YP_093946.1| putative DNA polymerase III alpha chain [Yersinia pestis]
 gi|108793591|ref|YP_636745.1| DNA polymerase III [Yersinia pestis Antiqua]
 gi|108793791|ref|YP_636633.1| DNA polymerase III [Yersinia pestis Nepal516]
 gi|145597255|ref|YP_001154722.1| DNA polymerase III [Yersinia pestis Pestoides F]
 gi|167402528|ref|ZP_02307979.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|229904862|ref|ZP_04519972.1| DNA polymerase III alpha subunit [Yersinia pestis Nepal516]
 gi|270491053|ref|ZP_06208126.1| DNA polymerase III, alpha subunit [Yersinia pestis KIM D27]
 gi|294502044|ref|YP_003565781.1| DNA polymerase III [Yersinia pestis Z176003]
 gi|14194660|sp|O68770|DPO3A_YERPE RecName: Full=DNA polymerase III subunit alpha
 gi|3883104|gb|AAC82764.1| putative DNA polymerase III , alpha subunit [Yersinia pestis KIM
           10]
 gi|52538047|emb|CAG27472.1| putative DNA polymerase III alpha chain [Yersinia pestis]
 gi|108777855|gb|ABG20373.1| DNA polymerase III [Yersinia pestis Nepal516]
 gi|108782138|gb|ABG16195.1| DNA polymerase III [Yersinia pestis Antiqua]
 gi|145213023|gb|ABP42428.1| DNA polymerase III [Yersinia pestis Pestoides F]
 gi|167048094|gb|EDR59502.1| DNA polymerase III, alpha subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|229678177|gb|EEO74283.1| DNA polymerase III alpha subunit [Yersinia pestis Nepal516]
 gi|262363938|gb|ACY60657.1| DNA polymerase III [Yersinia pestis D106004]
 gi|262364096|gb|ACY64432.1| DNA polymerase III [Yersinia pestis D182038]
 gi|270335034|gb|EFA45812.1| DNA polymerase III, alpha subunit [Yersinia pestis KIM D27]
 gi|294352515|gb|ADE66571.1| DNA polymerase III [Yersinia pestis Z176003]
 gi|320017589|gb|ADW01159.1| DNA polymerase III alpha subunit [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 1174

 Score =  305 bits (780), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 261/971 (26%), Positives = 424/971 (43%), Gaps = 104/971 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L V + +SL E AL   N +         A+   D+ N+ S +   + A    +  I G 
Sbjct: 4   LMVRTDFSLGESALKAENAVKIARDAGYTAVISADSMNIASVIPLQRAA-GDDMAVICGV 62

Query: 74  QLDIDMQDNLKMTNQGKTP---------FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +L++      +   +                      L+   +GY+ + EL++     +Q
Sbjct: 63  KLNVVDDPTYEHRARLAKESERCMESLVRDRSYCFTALIKNEQGYRDVCELMTLANKREQ 122

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                R+ L  L     +G I+L    +  I   F         K + T     G D  Y
Sbjct: 123 FYFVPRLALDQLAAAYAKGNIIL---LTSDIGSVFQRRDFA---KIIGTLVTAGGRDNFY 176

Query: 184 VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
             +  H   +      + +++A   ++  VA   + + + +D +  D+   V ++  + Q
Sbjct: 177 SVVYPHPTPFYDQINVRAMKVASALKIEPVAFYPAYYEAVDDADIKDIAHMVTNNIKIDQ 236

Query: 243 KDR-----PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             R      R    +  ++  E +  FS   +        +     I++         + 
Sbjct: 237 PHRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIEACTWRW-HELP 295

Query: 298 KECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                +  +E   L   AVAGL  R      G        + Y  RL +E++ + R+ F 
Sbjct: 296 PALPKMADDEPATLMKLAVAGLRKRLTTKEFGYTPPASEHRVYVDRLKYEMDTLTRLGFC 355

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
           GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+R  LLFERF+NP+R+ 
Sbjct: 356 GYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFINPERLD 415

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +ALRD  R     Y     
Sbjct: 416 LPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARI----YGVDAA 471

Query: 475 LCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
              +            ++ +   +               + + KL+ L R    HAAG++
Sbjct: 472 DMAVSKEFKNLEDDSLSLEELREQLASLDKYATKYPEAFKAACKLQSLMRGFGRHAAGMI 531

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
           +   PL +  P+      +     F+ ++ E  GLIK D LGL TL LL  +  ++ +  
Sbjct: 532 VAGVPLVERTPVELR--GNARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRYIKEST 589

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ----PDCIEDIIALVS 648
           G  ++L  IP DD +         T G+FQLES  MR+ L+ +     P   + ++A  +
Sbjct: 590 GEDINLDAIPLDDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTVVATTA 649

Query: 649 LYRPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
           L+RPGPI + ++ +     K      S+HP++D +  ET GVI+YQEQ M   +LL+G++
Sbjct: 650 LFRPGPIQSGMLDDYVSVAKGFMAPQSLHPVLDELTAETNGVILYQEQTMNATRLLAGFT 709

Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGAS----------------------------- 737
           ++EAD +R+A+GKK  E+M    E+F+  A                              
Sbjct: 710 MAEADGVRKAIGKKDMEKMKSMGEKFVVQAQAGWIDVEMEDGTTQRIHRAEHFKCEDGAL 769

Query: 738 -----------------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
                                  + G+S+T A  I++   K   Y FNKSH  AY++ISY
Sbjct: 770 RTVEEALEAGVKLPMAAVRVTGSQPGLSETKAKEIWDAFEKNGAYQFNKSHPVAYSLISY 829

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---- 830
           Q+ W+KTHYP EF AA++T  +   +K +   +DA  + I ++PP VN      ++    
Sbjct: 830 QSMWLKTHYPAEFFAAALT--ILGEDKHQGLVKDALTYGIHVLPPDVNVSSNRIEIRTLE 887

Query: 831 GDNRIYY-SLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCSRVDSK--KLNRRVLESL 885
             +++ Y   +A+KG      + IM A       F+SLE F   V+ +    N RV ESL
Sbjct: 888 DGSQVLYAPFSAVKGCSENGCQAIMRAREKVGGKFESLEQFEEAVEKRACACNSRVRESL 947

Query: 886 VFAGALDCFGY 896
              GA      
Sbjct: 948 QKVGAFASIEP 958


>gi|116334925|ref|YP_802420.1| DNA polymerase III alpha subunit [Candidatus Carsonella ruddii PV]
 gi|116235206|dbj|BAF35054.1| DNA polymerase III alpha subunit [Candidatus Carsonella ruddii PV]
          Length = 1113

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 258/985 (26%), Positives = 472/985 (47%), Gaps = 70/985 (7%)

Query: 11  FVHLQVHSSYS----------LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           F HL VH+ YS          LL+    + N           +I+ITD   + S  E+ +
Sbjct: 4   FTHLNVHTEYSIIDGIIKIGKLLQ----IYN------KLGIKSISITDILTIASFPEYYE 53

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            +    I+PIIG +  +                  + +++L+     GY +LI+++S  +
Sbjct: 54  YSLKKKIKPIIGTECFL-------------LINGKILNLILIAKNYLGYLKLIKIISNAW 100

Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
                +  V + L WL +   + LI++       ++  F   +       +      + +
Sbjct: 101 RYGNIENGVFLKLHWLYKFKNK-LIVIINLRYYLLESFF---NFCEFSIFIKELTINYNN 156

Query: 181 RLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             Y  + R +   +    ++++  +    + LVATN+  F+ ++D+  +   + +  + +
Sbjct: 157 NFYFEINRINLSLEELINNKIIYFSKLFNIKLVATNSVKFIFKKDFPINLSKILICQNKI 216

Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             +K     +   Y+K   +M  +F D+ E++EN   I   C+ +   +   LP+     
Sbjct: 217 FEEKLFFDYSNQQYIKTYKDMKKLFFDILESIENINLIILNCNVLFNFYKFNLPKIKISN 276

Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
               +K  +    N   AGL+ R+ +           Y  R++ E+ +  ++    Y+LI
Sbjct: 277 FKIRKKIFD----NLVKAGLKKRIKKKNKQIKI----YLNRVNKEVLLTKKLGLIDYYLI 328

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFD 419
           + +FI W +K NI  GPGRGSG+ S+  Y+L ITDIDP+  +LLFERF + +R+ +PD D
Sbjct: 329 ITEFIFWTRKKNIISGPGRGSGSSSLLCYSLYITDIDPINENLLFERFFSSERLGIPDLD 388

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           +DFC   RD +I ++ N YG+  ++QI+TF ++ AK+++RD+ RA+ M Y   +R  + +
Sbjct: 389 LDFCVLERDNIISHLYNYYGYNNISQIVTFHTVSAKSSIRDLSRAIGMDYISGERFSRSV 448

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
           P      +      ++   R     +     + +IS KLEG+ R+ S HA G+VI +  L
Sbjct: 449 PFSIELSME-HIFRENISVRSYISKNHKCFEIWKISSKLEGIARNISKHAGGVVICNTGL 507

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
           +   P+  D   +  +T +    ++  GLIKFDFLGLKTL+ +  +L  ++++       
Sbjct: 508 NNFTPILFD--ENECMTHYEKIILQDIGLIKFDFLGLKTLSTISLTLKMISEKNTGEFF- 564

Query: 600 LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
               DD+ T+ ++    T  IFQLES G+++ ++ +  + I D+I L+SLYRPGPI +  
Sbjct: 565 ---IDDYHTFQMINNLDTELIFQLESYGIKKIIKKLPIENIFDLINLLSLYRPGPIQSGF 621

Query: 660 VYNNRKNGKEKIVSIHPLIDP-------MLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           + +        + + HP  D        +L  T G+I++QEQV+Q+    +  S  +++ 
Sbjct: 622 INDFINRKNNIVKTYHPYSDCDFLQSKIILANTHGMILFQEQVLQLILFYTKCSNYDSEK 681

Query: 713 LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           +  +M KK K ++   K  FI+  +K GI K  +   F ++ KFA Y FNK+HA +Y+ I
Sbjct: 682 IYASMIKKSKIKLKISKLIFINECNKLGIDKKTSSKFFNIIEKFASYSFNKTHAHSYSKI 741

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            YQTA++K++Y +E+  +++ ++      I       +  ++    P +N    +FK+  
Sbjct: 742 VYQTAYLKSNYLLEYCLSNIYVDQLLGIDINNIINIIKSISVFFYKPDINLSDENFKIYK 801

Query: 833 NRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS-KKLNRRVLESLVFAGA 890
             I Y    +  +       ++        +++ E FC      K   ++++E+L+F+G 
Sbjct: 802 KGILYGFDIVTFIDENFIDKVIYYRNKLFYYNNFEMFCKIFSVFKIKKKKIIENLIFSGF 861

Query: 891 LDCFGYSRMQLLQS----LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVE 946
            DCF  +R+ L  +     +NI        +  T K    F + K  F      +K    
Sbjct: 862 FDCFKINRVILFVNFQFIFENILTLNNEYSRTITYKFVRYFNYAKKFFL----FKKILTI 917

Query: 947 NSSVRFENEQRVLGFYFSGHPLDVY 971
           +S      E+++L FY S +PL  Y
Sbjct: 918 SSINILNIEKKILKFYTSFYPLVFY 942


>gi|257458196|ref|ZP_05623350.1| DNA polymerase III, alpha subunit family [Treponema vincentii ATCC
           35580]
 gi|257444490|gb|EEV19579.1| DNA polymerase III, alpha subunit family [Treponema vincentii ATCC
           35580]
          Length = 239

 Score =  304 bits (778), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 120/241 (49%), Gaps = 6/241 (2%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +   FVHL VHS YSLL+GA S+  ++       Q A+A+TD  N+F+AL F ++  A
Sbjct: 1   MPQ--DFVHLHVHSDYSLLDGASSIKKLISTAKNLGQTALALTDHGNMFAALRFFRECKA 58

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            GI+P+IGC++ +             T       ++LL  T  GY+ L+ L S+ Y  + 
Sbjct: 59  QGIKPVIGCEVYVANGSRFGKPENTNTGVRKYFHLILLAETEIGYRNLMVLCSKGYT-EG 117

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                RI    L +  +EGLI L+   +G +           AE  +  ++ +FG +  +
Sbjct: 118 MYYKPRIDEELLTQY-SEGLICLSACLAGELPSLLLQGKQAEAEAHVRRYRSIFGINNYF 176

Query: 184 VNLQRHRGYDRYRES-QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           + LQ+H   D  + +  ++++A    +P+V TN++ +  ++D  A D+L+ +     V  
Sbjct: 177 IELQKHGIADEEKAAPMLIEMARKLGVPMVVTNDAHYAEQKDAVAQDILLCIGTKKTVPT 236

Query: 243 K 243
            
Sbjct: 237 P 237


>gi|165939425|ref|ZP_02227972.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|167422789|ref|ZP_02314542.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167470030|ref|ZP_02334734.1| DNA polymerase III [Yersinia pestis FV-1]
 gi|229897817|ref|ZP_04512972.1| DNA polymerase III alpha subunit [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229900269|ref|ZP_04515404.1| DNA polymerase III alpha subunit [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|165912613|gb|EDR31243.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166958282|gb|EDR55303.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|229686628|gb|EEO78709.1| DNA polymerase III alpha subunit [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229693398|gb|EEO83448.1| DNA polymerase III alpha subunit [Yersinia pestis biovar Orientalis
           str. PEXU2]
          Length = 1037

 Score =  304 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 261/971 (26%), Positives = 424/971 (43%), Gaps = 104/971 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L V + +SL E AL   N +         A+   D+ N+ S +   + A    +  I G 
Sbjct: 4   LMVRTDFSLGESALKAENAVKIARDAGYTAVISADSMNIASVIPLQRAA-GDDMAVICGV 62

Query: 74  QLDIDMQDNLKMTNQGKTP---------FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +L++      +   +                      L+   +GY+ + EL++     +Q
Sbjct: 63  KLNVVDDPTYEHRARLAKESERCMESLVRDRSYCFTALIKNEQGYRDVCELMTLANKREQ 122

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                R+ L  L     +G I+L    +  I   F         K + T     G D  Y
Sbjct: 123 FYFVPRLALDQLAAAYAKGNIIL---LTSDIGSVFQRRDFA---KIIGTLVTAGGRDNFY 176

Query: 184 VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
             +  H   +      + +++A   ++  VA   + + + +D +  D+   V ++  + Q
Sbjct: 177 SVVYPHPTPFYDQINVRAMKVASALKIEPVAFYPAYYEAVDDADIKDIAHMVTNNIKIDQ 236

Query: 243 KDR-----PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             R      R    +  ++  E +  FS   +        +     I++         + 
Sbjct: 237 PHRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIEACTWRW-HELP 295

Query: 298 KECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                +  +E   L   AVAGL  R      G        + Y  RL +E++ + R+ F 
Sbjct: 296 PALPKMADDEPATLMKLAVAGLRKRLTTKEFGYTPPASEHRVYVDRLKYEMDTLTRLGFC 355

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
           GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+R  LLFERF+NP+R+ 
Sbjct: 356 GYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFINPERLD 415

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +ALRD  R     Y     
Sbjct: 416 LPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARI----YGVDAA 471

Query: 475 LCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
              +            ++ +   +               + + KL+ L R    HAAG++
Sbjct: 472 DMAVSKEFKNLEDDSLSLEELREQLASLDKYATKYPEAFKAACKLQSLMRGFGRHAAGMI 531

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
           +   PL +  P+      +     F+ ++ E  GLIK D LGL TL LL  +  ++ +  
Sbjct: 532 VAGVPLVERTPVELR--GNARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRYIKEST 589

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ----PDCIEDIIALVS 648
           G  ++L  IP DD +         T G+FQLES  MR+ L+ +     P   + ++A  +
Sbjct: 590 GEDINLDAIPLDDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTVVATTA 649

Query: 649 LYRPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
           L+RPGPI + ++ +     K      S+HP++D +  ET GVI+YQEQ M   +LL+G++
Sbjct: 650 LFRPGPIQSGMLDDYVSVAKGFMAPQSLHPVLDELTAETNGVILYQEQTMNATRLLAGFT 709

Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGAS----------------------------- 737
           ++EAD +R+A+GKK  E+M    E+F+  A                              
Sbjct: 710 MAEADGVRKAIGKKDMEKMKSMGEKFVVQAQAGWIDVEMEDGTTQRIHRAEHFKCEDGAL 769

Query: 738 -----------------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
                                  + G+S+T A  I++   K   Y FNKSH  AY++ISY
Sbjct: 770 RTVEEALEAGVKLPMAAVRVTGSQPGLSETKAKEIWDAFEKNGAYQFNKSHPVAYSLISY 829

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---- 830
           Q+ W+KTHYP EF AA++T  +   +K +   +DA  + I ++PP VN      ++    
Sbjct: 830 QSMWLKTHYPAEFFAAALT--ILGEDKHQGLVKDALTYGIHVLPPDVNVSSNRIEIRTLE 887

Query: 831 GDNRIYY-SLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCSRVDSK--KLNRRVLESL 885
             +++ Y   +A+KG      + IM A       F+SLE F   V+ +    N RV ESL
Sbjct: 888 DGSQVLYAPFSAVKGCSENGCQAIMRAREKVGGKFESLEQFEEAVEKRACACNSRVRESL 947

Query: 886 VFAGALDCFGY 896
              GA      
Sbjct: 948 QKVGAFASIEP 958


>gi|83589893|ref|YP_429902.1| DNA polymerase III, alpha subunit [Moorella thermoacetica ATCC 39073]
 gi|83572807|gb|ABC19359.1| DNA polymerase III, alpha subunit, Gram-positive type [Moorella
            thermoacetica ATCC 39073]
          Length = 1214

 Score =  304 bits (777), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 186/995 (18%), Positives = 338/995 (33%), Gaps = 208/995 (20%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  S ++G   +  ++ + A     A+AITD   + +    ++     G++ I 
Sbjct: 312  VELHLHTKMSAMDGVTEVAAVVQQAARWGHGAVAITDHGVVQAFPAAAEAGRKYGVKIIY 371

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +  QDN    +Q          I++LV   +G   L  L+SR +L D   +  R+
Sbjct: 372  GVEGYLFDQDNQPPDHQ------RTYHIIILVKNKQGLANLYRLISRAHL-DFFYRKPRL 424

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ-VAEKRLLTFKKLFGDRLYVNLQRHR 190
                +QE   EGL++ T   +G + R +   + Q   E+    +        ++ +Q   
Sbjct: 425  PRHLIQEY-REGLLLGTACEAGELIRGYLAGADQTRLEEIASFYD-------FLEIQPLA 476

Query: 191  GYDRYR--------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
              D                   Q++ L      P+VAT +  FL+ ED     +L+A   
Sbjct: 477  NNDFLIRQGQVADRQALMDMNRQIIALGQKLGKPVVATGDVHFLNPEDAIYRQILLAGQG 536

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
                 Q      T +  L     +     D   A +  +   R  +  ++   PI   F 
Sbjct: 537  YADEVQAPLYYRTTEEMLAEFDYL-----DGETAHQVVITNPRLIAEQVEELKPIPDEFY 591

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
              E        E EL        +              +  R RLD E+  I    F+  
Sbjct: 592  PPEIPG----AEEELTRIVTTRAKEWYGDPL------PEIVRARLDKEMQAIIGHGFAVL 641

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------- 399
            +LI    +  + ++   VG  RGS   S+ A    IT+++PL                  
Sbjct: 642  YLIAHKLVHKSNEDGYLVG-SRGSVGSSLVATMAGITEVNPLPPHYRCPSCRYSEFISDG 700

Query: 400  ------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                      + FE FL      +PD D++F  + +    +Y +
Sbjct: 701  SAKCGADLPARDCPRCGTRLLKDGHDIPFEVFLGFKGDKVPDIDLNFSGEYQPRAHQYTE 760

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G + V +  T  +L  + A   V + L+                             
Sbjct: 761  TIFGKDHVFRAGTIATLAERTAFGFVHKYLE----------------------------- 791

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG--IVIGDRPLSQLVPMYRDVRS-- 551
                  R        +  + + + G+ R    H  G  +V     +    P+        
Sbjct: 792  -----ERGLKARQAEINCLVKGITGVKRTTGQHPGGLMVVPKGVDMHLFTPLQHPADDTG 846

Query: 552  -DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
                 T F+   I  + L+K D LG    T+++     + +    V+   IP D+  T  
Sbjct: 847  SGTITTHFDYHSI-SSRLVKLDLLGHDDPTVIK-----MLEDLTGVNAREIPLDEPRTMS 900

Query: 611  LLTTKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            L ++                TLGI +  +  +RQ LE  +P    +++ +          
Sbjct: 901  LFSSVEALGIRPEDIGSQVGTLGIPEFGTRFVRQMLEDTRPRTFAELVRISGFSHG---- 956

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
                     N ++ I S    +   +     ++ Y   +MQ            AD+  R 
Sbjct: 957  ---TDVWLNNAQDLIKSGTAKLSEAISTRDDIMNY---LMQHGV--------VADIAFRT 1002

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            M    K +    K+ +       G+ +    +  ++      Y F K+HA AY  ++++ 
Sbjct: 1003 MEDVRKGK--GVKKEYEEAIRAAGVPEWFIQSCKKI-----SYLFPKAHAVAYVTMAFRI 1055

Query: 777  AWMKTHYPVEFLAASMTLEMDNVE---------------------------------KIK 803
            A+ K +YP  F A+  ++  D  +                                  I 
Sbjct: 1056 AYFKVYYPEAFYASFFSIRADEFDADVVAAGLPRIQEEIAALERKGNEATAREKNILTIL 1115

Query: 804  KFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
            +  ++     I +    +       F V   ++   LAA+ GVG   A  I+ A  ++PF
Sbjct: 1116 EVAREMYCRGITLERIDLQKADASRFLVEPGKLLPPLAALPGVGRAAAEAIVRARQERPF 1175

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             S+ED   R    ++++ V+E+L   GAL     S
Sbjct: 1176 TSVEDLQYR---SRVSKTVIEALEKHGALADLPPS 1207


>gi|121533720|ref|ZP_01665547.1| DNA polymerase III, alpha subunit [Thermosinus carboxydivorans Nor1]
 gi|121307711|gb|EAX48626.1| DNA polymerase III, alpha subunit [Thermosinus carboxydivorans Nor1]
          Length = 1221

 Score =  303 bits (776), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 181/1003 (18%), Positives = 346/1003 (34%), Gaps = 213/1003 (21%)

Query: 2    TQYLEKS--PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
             + ++ +  P  V L  H+  S ++  +S+  ++   A  + PAIAITD   + +  E  
Sbjct: 312  QERMDTAAIPR-VELHAHTRMSNMDAVVSVKQLIKTAAKWKHPAIAITDHGVVQAFPEAY 370

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            ++A  AGI+ I G +  +   D                 I++L   A G + L  LVS  
Sbjct: 371  EEAAKAGIKVIYGMEGYLFDDD-----------ITQARHIIILAKNAIGLRNLYRLVSLS 419

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
            +L     ++ RI  + L+E   EGLI+ +   +G + +A    +S+    ++ +F     
Sbjct: 420  HLK-FLHRTPRIPRTALEE-HREGLILGSACEAGELIQAILAGASEEELLKIASFYD--- 474

Query: 180  DRLYVNLQRHR-----------GYDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
               Y+ +Q                D        +V +L      P+VAT +  FL+ ED 
Sbjct: 475  ---YLEIQPIGNNAFLVREGKVADDEGLRRLNLRVCELGEKLNKPVVATCDVHFLNPED- 530

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            E +  ++        + +  P                      +A E  VE +RR S ++
Sbjct: 531  EVYRRILMTGQGFADADQQPPLYFRTTDEMLSEFAYLGAE---KAYEVVVENSRRISELI 587

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            +   PI       +        E ++R+ A                   +    RL +EL
Sbjct: 588  EHFKPIPDELYAPKIPG----AEEQIRSMAYQRAIELYGDPL------PEIVASRLKYEL 637

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------ 399
            + I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL       
Sbjct: 638  DSIINNGFAVLYLIAHKLVKKSLDDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHWRCP 696

Query: 400  -----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQ 424
                                                 + F  F+      +PD D++F  
Sbjct: 697  ACKHSEFITDGSYGSGFDLPDKHCPQCQTLMQKDGHDIPFAVFMGFHGDKVPDIDLNFSG 756

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL-QMPYSQVDRLCKLIPNDP 483
            + +    +Y +  +G + V +  T  ++  K A   V        Y+  +          
Sbjct: 757  EYQPIAHKYTEELFGRDNVFRAGTIATIADKTAYGFVKNYFADKGYAVRNAY-------- 808

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQ 541
                                       + ++     G+ R    H  GI  V  D  +  
Sbjct: 809  ---------------------------INKLVSGCTGVKRTTGQHPGGIMVVPRDMDVHH 841

Query: 542  LVPMYRDVRSDL--PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
              P+           +T         + L+K D LG    T+++     + +    +D  
Sbjct: 842  FTPIQYPADDKNSSTITTHFDYHSISSRLVKLDILGHDDPTVIK-----MLEDLTGIDAK 896

Query: 600  LIPFDDHETYHLLTTKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             IPFDD +T  L ++                T GI +  +  +RQ LE  +P    +++ 
Sbjct: 897  QIPFDDAKTMSLFSSTEALGLTPEQLGTTVGTFGIPEFGTKFVRQMLEDTKPKTFSELVR 956

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +                   N ++ I      +   +     +++Y  Q         G 
Sbjct: 957  ISGFSHG-------TDVWLNNAQDLIKKGIAKLSEAISARDDIMVYLIQ--------KGL 1001

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
                A  +   + K    + +             G+ +    +  ++      Y F K+H
Sbjct: 1002 EPQIAFKIMEGVRKGKGVKPEDV-----EYMRSKGVPEWYIESCQKI-----KYMFPKAH 1051

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD----------------- 808
            A AY +++++ A+ K HYP+ F A+  T+   + +       +                 
Sbjct: 1052 AVAYVMMAFRIAYCKVHYPLAFYASYFTVRATDFDADLIIQGEAALRSKINEFEQKGNNL 1111

Query: 809  ---------ARQFNIQIMPPSVNTPCVD--------FKVGDNRIYYSLAAIKGVGTTTAR 851
                       +  +++         VD        F + DN +   + +++GVG T AR
Sbjct: 1112 SAKEKSQLTIMEMALEMYLRGYIFHPVDIYRSDAAKFLIVDNGLLPPIGSLQGVGDTAAR 1171

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +I++A  ++PF SL+D  +R    ++++ V+++L   G LD  
Sbjct: 1172 NIVQARKERPFSSLDDLRTRA---RVSKTVIDTLKAHGCLDDL 1211


>gi|294155789|ref|YP_003560173.1| DNA polymerase III, alpha subunit [Mycoplasma crocodyli MP145]
 gi|291600163|gb|ADE19659.1| DNA polymerase III, alpha subunit [Mycoplasma crocodyli MP145]
          Length = 974

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 264/963 (27%), Positives = 456/963 (47%), Gaps = 107/963 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  ++ +S L   + L  +    +  +   +A+TD NN+F+   F   +    I+PIIG 
Sbjct: 6   LHTNTEFSFLNSTIKLEKLFKLASEKEYEYLAMTDINNMFALGMFLNLSKKYNIKPIIGF 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           +L                      S++++    EGY   IEL +  +L+ +G++      
Sbjct: 66  EL-----------------LQDNISVIIIAKNYEGY---IELNNIAFLVSKGQKV----- 100

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDR-LYVNLQRHR 190
             L+ + +  + ++    +G     +  N+ +V +     +  K +  D+ +Y  +++  
Sbjct: 101 -ELESLDSNNVYVIDHEENG-----YLKNNLEVPKISNFWYNSKTIISDQTIYAPVKKVL 154

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
             D      ++ L  T    +  +  + + +E+D+   D  + +  +T+V+  +      
Sbjct: 155 FEDD--NEALIALQTTGNNKITNSYYNDYFNEKDFIGIDNKVLLNVNTLVNSINIIFPDS 212

Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
              L                                    +L +      D  +KE E  
Sbjct: 213 TPKLAEFKND-------------------------LTPEKLLYKQCLIGLDINKKEFEKY 247

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                +                       RL +E   I ++ F  YFLI+ D I +AK  
Sbjct: 248 SIETVME----------------------RLTYEYKTIVKLGFCSYFLIIKDVIDFAKNK 285

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
            I +GPGRGS AGS+ ++ L IT I+PL+++LLFERFLN DR++MPD DID   DRRDE+
Sbjct: 286 GIYIGPGRGSAAGSLISFLLGITKINPLKYNLLFERFLNVDRVTMPDIDIDIQDDRRDEI 345

Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
            +Y+  KYG+E  + I TF S+ AK A+RD+GR LQ+  + +D + K +  D    +   
Sbjct: 346 AKYIVEKYGYEYCSYISTFQSIGAKMAIRDIGRYLQINLNIIDSISKSL--DQNETLEEA 403

Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
            + +    R  +       +LLE+++K+EG+ R    H AGI+I +  ++ + P Y +  
Sbjct: 404 CLKN----RVFKAEISEYPKLLELAKKIEGIPRQHGIHPAGIIISNTKITDIAPTYSNST 459

Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP---FDDHE 607
            +L   Q  + ++E  GL+K DFLGLKTL++++   + +        L       F+D +
Sbjct: 460 -NLSQIQLPLNFLEDYGLLKIDFLGLKTLSIIKDIEEVIPNELRFDYLYDKNENIFNDKK 518

Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
           T+ +L +  T GIFQLES GM+ A+  +  D   D++A++SL+RPGP+  I  Y N K  
Sbjct: 519 TFDVLNSGLTEGIFQLESPGMKSAITKVSIDSFNDLVAIISLFRPGPMQYIDQYANGKKD 578

Query: 668 KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            + I  IHP  D ++K+T G+I+YQEQ+MQI Q +S  + S+AD+LRRA+ KK ++++ +
Sbjct: 579 PKTIKRIHPYYDEIVKDTFGIIVYQEQIMQIVQKISSMTFSQADLLRRAISKKDEKKLVE 638

Query: 728 QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            K  F  G  KN I K +   I+  +  FADYGFNKSHA AY+ I+Y+ A+ KT+Y   F
Sbjct: 639 MKSSFFEGGIKNNIKKDVLDEIYARIELFADYGFNKSHAVAYSYITYKMAYYKTNYKNVF 698

Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
             A ++        I K+ ++A+  +I +  P +N       V ++ +Y  L  IKGVG 
Sbjct: 699 YRALISNANGTHLTINKYVKEAKSVDISVQSPDINFSKKHAVVINSNLYLPLNMIKGVGG 758

Query: 848 TTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                I+     +K F S  +   ++ +  +   ++ +L+ +     +G +   LL SL 
Sbjct: 759 VALEKIINTPKDNKKFSSFFELYLKLRNSGVGESIINALIKSNTFRTYG-NVNSLLNSLS 817

Query: 907 NIQK---------YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
             +              ++  + +    +F  E      K+ +    +E  S   + E  
Sbjct: 818 IAKNLYETFKLKVSRLKIQDEKIDDELVLFIKENNLLDRKVDIIDRDIETES---KYELE 874

Query: 958 VLG 960
           +LG
Sbjct: 875 LLG 877


>gi|254716293|ref|ZP_05178104.1| error-prone DNA polymerase [Brucella ceti M13/05/1]
 gi|261218072|ref|ZP_05932353.1| error-prone DNA polymerase [Brucella ceti M13/05/1]
 gi|260923161|gb|EEX89729.1| error-prone DNA polymerase [Brucella ceti M13/05/1]
          Length = 605

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 162/636 (25%), Positives = 267/636 (41%), Gaps = 51/636 (8%)

Query: 16  VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPII 71
             S++S L GA     ++++  A     I I D N L   +    +       +G +  I
Sbjct: 9   AASNFSFLCGASHPQELVERAHALDLSGIGIADRNTLAGVVRAHAQWKDIRKESGFRLFI 68

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           GC+L                     P +V+       Y +L  L++        K    +
Sbjct: 69  GCRLSFIDG---------------TPDMVVYPRDRAAYGQLCRLLTEGKHRAAIKGECHL 113

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL-QRHR 190
             + L     +  I +        D A           RL    +     +++ L   H+
Sbjct: 114 EWADLLFRARQFQIAVFPPDEDEPDFA----------ARLTEIAQAAPGSVWLALTMPHQ 163

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VT 249
           G D  R  ++ + A    +PL+ATN+ L+   +     DVL A  H T V    R     
Sbjct: 164 GQDGRRAERIARFAAQAGVPLIATNDVLYHHPDRRPLQDVLTATRHHTTVFAAGRLLEKN 223

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            + +LK   EMV +F D PEA+  T +     +F L       P           K  + 
Sbjct: 224 AERHLKPPHEMVRLFRDYPEAIAATADFVAPITFQLDELKYAYPDEPIPPG----KTAQQ 279

Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            L +    G         I         +  ++ EL +IAR+++  YFL V D +  A++
Sbjct: 280 HLYDLVWEGAARHYGADMI-----PPKVQGLINKELALIARLEYEPYFLTVYDIVTHARE 334

Query: 370 NNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
             I    GRGS A SV  + L IT ++P +  LLFERF++ +R   PD D+DF  +RR+E
Sbjct: 335 KGIL-CQGRGSAANSVVCFCLGITGVNPTQVDLLFERFISAERKEPPDIDVDFEHERREE 393

Query: 430 VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
           V++YV ++Y  +R A + T  S ++++A+RDVG+AL +       L   +       +  
Sbjct: 394 VMQYVYDRYSRDRAAIVATVISYRSRSAIRDVGKALGLSEDVTAALANTVWGLSGGGIDR 453

Query: 490 QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDV 549
           Q I    R       +P + R +E++  L G  RH S H  G V+    L + VP+    
Sbjct: 454 QHI----RQAGLDPDNPIIQRAVELAITLIGFPRHLSQHVGGFVLTRDRLDETVPIGPAA 509

Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD------LSLIPF 603
                  +++   I++ GL+K D L L  LT ++K+ D + Q   ++       L+ +P 
Sbjct: 510 MDKRSFIEWDKDDIDEVGLMKVDVLSLGMLTCIRKAFDLIHQHKPQLYGGEKLTLASLPR 569

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
           +D   Y +L    +LG+FQ+ES      L  ++P  
Sbjct: 570 EDKAVYDMLCKGDSLGVFQVESRAQMNMLPRLRPQE 605


>gi|156564220|ref|YP_001429761.1| DNA polymerase III alpha subunit [Bacillus phage 0305phi8-36]
 gi|154622917|gb|ABS83797.1| DNA polymerase III alpha subunit [Bacillus phage 0305phi8-36]
          Length = 1348

 Score =  302 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 171/834 (20%), Positives = 329/834 (39%), Gaps = 114/834 (13%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           VH+ +HS +S+ +          +        I +TD  N+   ++F +     GI+ I 
Sbjct: 39  VHIHMHSIFSIADAMCKPKETAKRAKQLGIDTIILTDHGNISGVIQFKKACEEEGIKFIP 98

Query: 72  GCQLDID-MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG--KQS 128
            C++     +  +   +  +  +     I ++    +G+  L  L+S          K  
Sbjct: 99  ACEMYEAKDRTVISKADCARGNWNASRHITMIPVNNQGWADLQHLISDANQYVYYAPKPL 158

Query: 129 VRICLSWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            R  +++++  G  + +I  TG  +    +       + A++ +L    LF  R ++ +Q
Sbjct: 159 PRTDMNYIESNGLGKNIIATTGCLASETSQLILEGKEEEAKQEILRRNNLFY-RYFLEIQ 217

Query: 188 RHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            +   ++      +++++    +PLV   +  ++  +D +AH  L+A++    V      
Sbjct: 218 DNGSREQEIVNEALIRISNDTGVPLVYAKDVHYVKPDDKDAHHALVAISRKQSVYDCAPY 277

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             T  ++L +  E+     +                              E         
Sbjct: 278 SGTNTYHLASADEVYQWADENNVPHSAIENTCWIADNCNVDIELNKDLMPEFPYCPDGHT 337

Query: 307 EENELRNKAVA---GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
           + + L+        G    +           ++Y +R++ EL ++   K+  YFL++ D 
Sbjct: 338 DASYLKKLLFDNLIGYVEFVEVNGYKINV--KEYIERVEHELRIVTMKKYPSYFLLLWDI 395

Query: 364 IQWAK----------------------------------------------------KNN 371
           + WA                                                        
Sbjct: 396 LLWASDRNKWLSYPQNKEWIEAEVHEVVVKVVKDKQTGKKKKVKRKVVSKPNAKYAFYPE 455

Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
             VGPGRGS AGS+ A+ L IT +DP+++ L+FERFL+P R S PD D+DF  D  D ++
Sbjct: 456 FLVGPGRGSAAGSMMAFLLDITRLDPIQYGLMFERFLSPYRDSPPDIDVDFPGDNHDMLL 515

Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGR---------------------------- 463
            +V  +YG ++ AQ++TF   + K+++  + +                            
Sbjct: 516 DFVAQRYGRDKTAQVLTFTKFKLKSSIDKICKALEKRDPDNPKKVLEYGYKVADEVKATL 575

Query: 464 ----ALQMPYSQVDRLCKLIPNDPAHPVSLQAI-----ADDSRFREARLADPSVDRLLEI 514
                      Q D   K +     HP +               ++ R        L + 
Sbjct: 576 KETGDQGKMPDQKDCTYKDMMEISVHPENYARYGGSLSKFVEASKQFRKLMTKYPELNDY 635

Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKF 571
             K+EG    +  HA G++I  RPL    P  +         P+T ++    E  GL+K 
Sbjct: 636 LGKIEGAIDTSGIHAGGVIISKRPLDLDCPTIKPTEKSKAVLPITMWDYPDCESVGLLKM 695

Query: 572 DFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
           D L   TL ++  ++D + Q  G ++D+  I  DD + + ++    T G+FQ+   G+  
Sbjct: 696 DLLRTSTLRIISTTIDLIEQSTGKRIDIYSIGRDDPKAFEVMAKGETHGLFQVAGRGITA 755

Query: 631 ALEGMQPDCIEDIIALVSLYRPGPI-------DNIVVYNNRKNGKEKIVS---IHPLIDP 680
               + P   E++I +++L+RPGP+       + I         ++       +HP +  
Sbjct: 756 YTRQVAPAKQEEVIDILALFRPGPLDATLENGNTIAQQYVLNGSRKPKEYLSDVHPDMRA 815

Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
           +LK+++G ++YQEQ+M + Q+++GY+L  AD  RR +GKK  +EM K  + F+ 
Sbjct: 816 LLKQSRGQMVYQEQIMGLVQVIAGYNLGHADNFRRVIGKKKIDEMPKLYDEFMY 869



 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/435 (20%), Positives = 168/435 (38%), Gaps = 33/435 (7%)

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             ++  +  +G+ Q+ +       +  +    +  I  +       +        +     
Sbjct: 823  QMVYQEQIMGLVQVIAGYNLGHADNFRRVIGKKKIDEMPKLYDEFMYGHKYVIEKFENLL 882

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
                  P                +   +   + S Y  ++  + ++ +   IK+      
Sbjct: 883  AKYDSMPKH------------TDKDGNEGVIIKSDYDGNDLFLRKQDIENTIKKNKKAMD 930

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
               I GA  N   ++ A N+F  +A FA Y FNKSH+A YA  +YQTAW+K HYPVEF+ 
Sbjct: 931  SHEIVGAVTNNYKESFAKNLFSQMAAFAGYAFNKSHSACYADETYQTAWLKVHYPVEFMT 990

Query: 790  ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTT 849
            A +++   + EK  +  ++A++  I+I+PP +N    DF      I + + +I GVG   
Sbjct: 991  ALLSVRGGDKEKTMENLKEAKRMGIRILPPDINKSYADFSPDAGAIRFGIFSIAGVGEKA 1050

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSK----------KLNRRVLESLVFAGALDCFGYSR 898
             R I+     +  +   +DF +R   K           +NR V+ +L+ AG  D F  +R
Sbjct: 1051 VRAIVRERDNNGDYKDFDDFYTRCVVKFVKTEEQKSNPINRGVIRTLIEAGCFDTFERNR 1110

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
              LL        +    +K      E++    K   +     +  +  N     + E  +
Sbjct: 1111 YNLLNHY----NFTLRKDKVWNGLEEDLL-TSKEKANHSFAYDP-AQFNEKRMLQMEHEL 1164

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWV 1018
            +G Y SG P   Y+  L    +   + S          +   +   +  KT++   + +V
Sbjct: 1165 IGIYVSGSP---YED-LPFTPLLDMDVSRGRRDKKEYDVGGRITKVRTIKTKRKEDMAFV 1220

Query: 1019 TFSEPAKEYEANFFP 1033
                  +  E   FP
Sbjct: 1221 EIETQLEPLEFTVFP 1235


>gi|157310965|ref|YP_001468961.1| putative DNA polymerase III alpha subunit [Corynebacterium phage
           P1201]
 gi|95832113|gb|ABF57513.1| putative DNA polymerase III alpha subunit [Corynebacterium phage
           P1201]
          Length = 652

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 155/620 (25%), Positives = 259/620 (41%), Gaps = 50/620 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV L  H+S+S  +G  S    + ++      A+A+T+   + S ++  Q A  AGI+PI
Sbjct: 32  FVSLHSHTSFSSGDGHGSPAEHVARVKELGMSALALTEHGTVSSHVQLEQAALKAGIKPI 91

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL----LDQGK 126
            G +  +      +                +L    EGY+ L  +V+  Y          
Sbjct: 92  FGVEAYVAEPGEKRK-----------FHQTILAMNEEGYRNLSRMVTESYKKKEDKSGFY 140

Query: 127 QSVRICLS-WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE----------------- 168
               I     L   GTEGL++L+G +   +        SQ                    
Sbjct: 141 HYPTINTETLLNRHGTEGLVILSGCADSWLSCTLAGGKSQGLRVREDIGPAQYSDDDRLQ 200

Query: 169 ---KRLLTFKKLFGDRLYVNLQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEE 223
              + +  F  ++GDR Y+ +Q    YDR  +   Q+  L+   ++PLVAT ++ +   E
Sbjct: 201 MGAELVERFLDVYGDRYYLEVQPFSNYDRTVFLNQQIESLSKELDVPLVATADAHYPYPE 260

Query: 224 DYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTV----EIAR 279
           D+E   +  A+     + + DR               ++I        ++        + 
Sbjct: 261 DWEIQKLSNAIKWKIPMDKMDRDYAADPCTYPESDREMAIRLIKAGVSKDGAVKAINNSS 320

Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE---VRLAQGAIAKGYHAQD 336
           R +  L V  P   +    E +         L+     G++       +         ++
Sbjct: 321 RVADRLNVTLPKTSQVRFSESNGTASHAAYLLKEAIKEGVKFRAETNERFREDFRKRKEE 380

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
           Y  R+  EL VI    FS YFLI    + WAK N I VGPGRGS AGS+  Y L I++++
Sbjct: 381 YTARIKKELAVIIPKDFSDYFLINQQILGWAKDNGIAVGPGRGSAAGSLVCYLLRISEVN 440

Query: 397 PLRF-SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
           P+ F  +LFERFL+P R   PD D D+  DRR+EV  + ++ YG + V  I  F   + K
Sbjct: 441 PMEFPQMLFERFLDPGREDPPDVDTDYADDRRNEVFEFARSIYGVDNVGNIGNFSRFRGK 500

Query: 456 AALRDVGRALQMPYSQVDRLCKLIPNDP-AHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            A++D  +A+  P  + +  C+ I   P   P       D +               LE+
Sbjct: 501 TAIKDTAKAIGAPPWEAEEFCEFIVEAPYGDPREFDTAEDTAIAFPEAKKIIDNHPGLEL 560

Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPM---YRDVRSDLPVTQFNMKWIEKAGLIKF 571
           + +LEG  +    HAAG+VI + P+S    +    +       V  ++ +     G++K 
Sbjct: 561 AFRLEGDQKTLGVHAAGMVISNSPISDTCAIYEREKTNGDMTEVLAYDKRDSAYLGMLKL 620

Query: 572 DFLGLKTLTLLQKSLDFLAQ 591
           D LGLKT+T++  ++  + +
Sbjct: 621 DCLGLKTMTIISDTIKSVNE 640


>gi|328912208|gb|AEB63804.1| putative DNA polymerase yorL [Bacillus amyloliquefaciens LL3]
          Length = 1309

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 193/1021 (18%), Positives = 390/1021 (38%), Gaps = 129/1021 (12%)

Query: 15   QVHSSYS---LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ---KACAAG-- 66
              H+  S   LL+   S+  +L          +AITD   L + LE  +   +    G  
Sbjct: 5    HCHTDKSNIRLLDSTNSVGELLKTAVQMNYKGLAITDHEILSAHLEAIKTVREMKKKGDM 64

Query: 67   ---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
                + I+G +  + +    ++ +  K+     P  ++L    +G+++L  L S+ +  +
Sbjct: 65   PADFKLILGNEAYL-VDSLEEVRDNYKSGQTKFPHFLMLAIDPKGHEQLRILSSQAW-EN 122

Query: 124  QGK-----QSVRI--CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV---------- 166
                    +   +   +  L       +I  T      ++                    
Sbjct: 123  SFYTGTMERVPTVKKDVEELLSKDPGHIIATTACLGSEVNINLLRIKECEESGDIQSIKQ 182

Query: 167  ----AEKRLLTFKKLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFL 220
                  + +    K+FG D+ ++ LQ     ++     ++V +A  + L ++ T ++ FL
Sbjct: 183  NKLKIHEFITWCVKVFGKDKFFIELQPALSEEQIYCNKKLVNIANGYGLKVIVTTDAHFL 242

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-ALENTVEIAR 279
              ED   H   +                   +  +    M  +  ++ + A+ENT+ I  
Sbjct: 243  RPEDRAIHQAFLNAKDGEREVDSFYEACFVQNVDEIHERMDYLDKEIIKEAIENTLLIGE 302

Query: 280  RCSFILQVHAPILPRFIEKECD-------------------DIQKEEENELRNKAVAGLE 320
                    H PI+P+    E +                   +  +E++  L      G +
Sbjct: 303  MIEDYTIEHEPIIPKMALPEFELSHLFKPAYEKYKYIKLMAESDEEQDRYLLKLIEDGFK 362

Query: 321  VRLAQGAIAKGYHAQDYRQR-----LDFELNVIARMKFSGYFLIVADFIQWA----KKNN 371
             +L +  ++K       ++        +E++   +   S Y++ V + I          +
Sbjct: 363  AKLMKKDMSKKELHSILKRIDLELGELWEISEKLKQAMSSYYVTVREIINTIWDDECGGD 422

Query: 372  IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              VG  RGS AG +  Y L IT I+P++++L   R ++  R  +PD DID    +R  ++
Sbjct: 423  SLVGAARGSAAGFLVNYLLDITQINPMQYNLPHWRHIHKSRPDLPDIDIDTEGSKRSRIL 482

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQ 490
            + +++K+G +RV QI TFG+ ++K+AL+   R L +       L  +IP +     +   
Sbjct: 483  KALRDKFGEKRVLQICTFGTEKSKSALQTACRGLGIDNDISQYLSGMIPFERGANWTLSD 542

Query: 491  AIADDSRF-----REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                +        +E          L E   K+EGL    S+HAAG++I +   ++   M
Sbjct: 543  CFFGNEELGRKPIKEFIREVEGYPNLKETCLKIEGLTNKRSSHAAGVLIFNDEYTKSNAM 602

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-------------FLAQR 592
             R       +TQFNM   E  G +K+D L ++ L  ++ +LD                  
Sbjct: 603  MRTP-KGAYITQFNMGDSEAMGSVKYDLLTIEGLDKIRVALDQLIEDNQIESQGTLKRTY 661

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +    + ++    + +      + +FQ ++    Q++  ++P  + +     SL R 
Sbjct: 662  TKYLHPDTLEYNSKRIWEMAGEGEIMDLFQFDTEVGNQSVVKVKPKNLLETAVTNSLMRL 721

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET-----------------QGVIIYQEQV 695
                     +     K+ I   +  +      +                  G+   QE V
Sbjct: 722  MSEGEEQPVDTYVRFKKDIDHWYQEMRNYNLSSEEMDVLKKHLYKPEEGLYGIADTQESV 781

Query: 696  MQ--IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
            M   + + ++G+++ E++ LR+ + KKIK+ +D  K  F       G S+ +   ++E+ 
Sbjct: 782  MMLSMDKEIAGFTIEESNKLRKGIAKKIKKMIDAIKTMFFEKGRSLGTSENLLKYVWEVQ 841

Query: 754  AKFA-DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM---------------- 796
             K    Y F+  H  AY++I+ Q   +   Y   + + +                     
Sbjct: 842  FKRQFGYSFSSLHTLAYSIIALQELNLNYKYNPLYWSTACLTVNSGGIESEEDQATKKSA 901

Query: 797  -DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIYYSLAAIKGVGTTTARHI 853
              N  K+     + R+  I++  P +N+    FK     N I + L  + G+G      I
Sbjct: 902  ATNYGKVAAAIGNIRKRGIKVDLPDINSANFGFKADTESNSIIFGLKGMNGIGDDVVHQI 961

Query: 854  MEASADKPFDSLEDFCSRV-DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            +    ++P+   +DF  R+  S  L +  +  L+  G  D FG  R ++++S  ++    
Sbjct: 962  I---VNRPYSDFDDFIERMFKSSILKKGQMIQLIKGGCFDSFG-DRQKIMKSFISLISEP 1017

Query: 913  Q 913
            +
Sbjct: 1018 K 1018


>gi|269956241|ref|YP_003326030.1| DNA polymerase III subunit alpha [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304922|gb|ACZ30472.1| DNA polymerase III, alpha subunit [Xylanimonas cellulosilytica DSM
           15894]
          Length = 1185

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 141/488 (28%), Positives = 215/488 (44%), Gaps = 18/488 (3%)

Query: 5   LEK-SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
           +   SP +  L  HSS+S L+GA     +  + A     A+A+TD + L+  +  SQ A 
Sbjct: 1   MTDPSPRYAELHAHSSFSFLDGASHPEELAAEAARLGLSALAVTDHDGLYGVVRHSQTAA 60

Query: 64  AAGIQPIIGCQLDI------DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
           +  ++ + G +L +       +     +      P P    +++L   A+GY RL   ++
Sbjct: 61  SVRLRTVFGAELHLPVPPGPGVGPRPVLDPPTGIPDPRAEHLLVLARGADGYARLSSAIA 120

Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             +L    K         L E      ++LTG   G + RA     +  A + L     L
Sbjct: 121 AAHLEAGVKGKATYHPERLGEQAAGEWLVLTGCRKGSVRRALAAEGTGGARRELDRLVAL 180

Query: 178 FG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
           FG + + V +       D      +  LA+   LPLVAT N+ +    D      L AV 
Sbjct: 181 FGHENVAVEITATGDPRDADLHDALATLAHDARLPLVATTNAHYARPRDAHLAQALAAVR 240

Query: 236 -HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
             S++          P  +L++ +EM  +    P ++     +A  C+F L++ AP LP 
Sbjct: 241 ATSSLEQMDGWLPGAPTAHLRSGAEMARLHHRHPHSVPTAAALADECAFDLRLVAPGLPP 300

Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
           +   E  D    E + LR     G   R                 +LD EL VI  + F 
Sbjct: 301 YPVPEGHD----EASWLRELVYRGATDRY---GPRHAERIAGAWAQLDHELAVIEGLDFP 353

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
           GYFL+V D +++ + + I    GRGS A S   YAL IT +D ++  LLFERFL P+R  
Sbjct: 354 GYFLVVYDLVEFCRVHGIL-AQGRGSAANSAVCYALGITAVDAVKNRLLFERFLAPERDG 412

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            PD DID    RR+EVI++V  K+G    AQ+    S + ++A+RD  RAL     Q D 
Sbjct: 413 PPDIDIDIESVRREEVIQHVYTKFGRSHAAQVANVISYRPRSAVRDAARALGYDVGQQDA 472

Query: 475 LCKLIPND 482
             K I   
Sbjct: 473 WSKSIERW 480



 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 177/896 (19%), Positives = 314/896 (35%), Gaps = 81/896 (9%)

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY-EAHDVLMAVAHSTVVSQKDRP 246
             HR       +  +      +L LVA     +   E + EA  +   V          R 
Sbjct: 270  HHRHPHSVPTAAALADECAFDLRLVAPGLPPYPVPEGHDEASWLRELVYRGATDRYGPRH 329

Query: 247  --RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R+       +    V    D P       ++   C     +            C  + 
Sbjct: 330  AERIAGAWAQLDHELAVIEGLDFPGYFLVVYDLVEFCRVHGILAQGRGSAANSAVCYALG 389

Query: 305  KEEENELRN-KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                + ++N             G        +  R+    +           +       
Sbjct: 390  ITAVDAVKNRLLFERFLAPERDGPPDIDIDIESVRREEVIQ-----------HVYTKFGR 438

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
               A+  N+     R +   +  A    +   D    S+     L       P  +    
Sbjct: 439  SHAAQVANVISYRPRSAVRDAARALGYDVGQQDAWSKSIERWGSLRDTPKVAPAVETRAA 498

Query: 424  ---------QDRRDEVIRYVQNKYGHERVAQII---TFGSLQAKAALRDVGRALQMPYSQ 471
                        RD              V  +         +     R+V R        
Sbjct: 499  VKDARGAAVWGNRDRDWTPSLGYAPPRVVDPLAHDDADRPARPADLEREVVRRTTSRGGG 558

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                       P        +        A       +++++++++   L RH   H+ G
Sbjct: 559  EGLYLGSGSGSPERSDDAHDVVPAHAPPSAADEGTIPEQVIDLAERFLRLPRHLGIHSGG 618

Query: 532  IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
            +V+ DRP+ ++ P+         V Q++ +    AGL+KFD LGL  LT ++ + + +  
Sbjct: 619  MVMCDRPVIEVCPVEWARMEGRTVLQWDKEDCADAGLVKFDLLGLGMLTAIRYAFEGIEA 678

Query: 592  RGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            R  +   L  +P DD   Y LL    T+G+FQ+ES      L  ++P    DI+  V+L 
Sbjct: 679  RTGERLQLHHLPEDDPAVYDLLCAADTVGVFQVESRAQMATLPRLRPRNFYDIVVEVALI 738

Query: 651  RPGPIDNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGPI       +  R+N ++K+   HPL++  L  T GV ++QEQ+MQ+A  ++G+S +
Sbjct: 739  RPGPIQGNSVNPFIERRNKRQKVTYPHPLLEKSLSRTLGVPLFQEQLMQMAIDVAGFSPA 798

Query: 709  EADVLRRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            E+D LRRAM  K+  E M+  + R + G +KNG+   +   I+  L  FAD+GF +SHA 
Sbjct: 799  ESDRLRRAMGSKRSLERMEALRGRLMEGMTKNGVPPDVQEEIYGKLKAFADFGFPESHAY 858

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV- 826
            ++A + Y ++W+K H+P  F A  +  +       +    DAR+  + ++ P +      
Sbjct: 859  SFAFLVYASSWLKVHHPAAFYAGLLAAQPMGFYSPQSLVADARRHGVTVLRPDLGASAAL 918

Query: 827  -------------------------DFKVGDN---RIYYSLAAIKGVGTTTARHIMEAS- 857
                                      F    +    +   LA ++ +GT  A  I+    
Sbjct: 919  ACVERLPDDAPLEPERIPLPRSPDPRFGPDPDLRLAVRQGLAEVRSIGTDLAESIVAERS 978

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
            A+ PF  L D   RVD   L    LE+L  AGA +  G  R + L +   +         
Sbjct: 979  ANGPFRDLRDLVRRVD---LTTPQLEALATAGATESLGVGRREALWAAGAL--------- 1026

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
                  E          S  +        +       +    G      P+++ +  L +
Sbjct: 1027 ----GQEG--PDTLEGVSVGVEAPTLPGMSDVETTVADSWATGVTPGLSPVELVRDSLTR 1080

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G+     +  T  G  I +  ++  +Q+  T  G  + +++  +          P
Sbjct: 1081 AGVVTVGRANVTEDGRRIAVGGVITHRQRPGTAGG--VTFLSVEDETGLLNVVCSP 1134


>gi|213691703|ref|YP_002322289.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|322691507|ref|YP_004221077.1| DNA polymerase III alpha subunit [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|213523164|gb|ACJ51911.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320456363|dbj|BAJ66985.1| putative DNA polymerase III alpha subunit [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|320457794|dbj|BAJ68415.1| putative DNA polymerase III alpha subunit [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 878

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 148/739 (20%), Positives = 270/739 (36%), Gaps = 77/739 (10%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            FV+L VHS YSL +G  +++ ++ +     QPAI +TD  ++   +EF +     GI+P
Sbjct: 20  DFVNLHVHSDYSLADGVSTVSELMSEAQRLGQPAIGLTDHGSVGGLMEFWKAGRQRGIKP 79

Query: 70  IIGCQLDIDMQDNL------------------------KMTNQGKTPFPTVPSIVLLVST 105
           I+G +  +  +                                  +       + L   +
Sbjct: 80  ILGVEAYVTPETGRTDTRCVSWDNSWKERNTRRSVTCVPHDPYDVSGGGLFTHLTLWAES 139

Query: 106 AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
            EG   L++  S   L     +  R+  + L     +GLI  +G  SG I          
Sbjct: 140 DEGLVNLMKASSVANLEGLVSRYPRMDNNVLSSF-AKGLICGSGCMSGAIPTRLLLGQFD 198

Query: 166 VAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEE 223
            A +     + +FG D  ++ +  H    +    + +V+LA     PLVAT++  +   +
Sbjct: 199 EALRMAGELQDIFGRDNFFIEIMDHGLSIEHQIRNDLVELAKRINAPLVATSDVHYAKRD 258

Query: 224 DYEAHDVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
           D   HDV + +    V+    R +  + ++YL++ + M S+FSD+PEA +NT+ IA RC 
Sbjct: 259 DSLKHDVRICIETGDVMDGPHRFKFESEEYYLRSSAVMRSLFSDVPEACDNTLLIAERCD 318

Query: 283 FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
               V        +  +         +E+    V G            G        R  
Sbjct: 319 TGFCVAE---DGSLMPQHVGADGRASSEILQGEVEGWLQT------KYGSIPDSVWNRAQ 369

Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSL 402
            E+ VI       Y + VA      ++    VGPG+G  A S+ AYAL I++IDP+ + L
Sbjct: 370 HEMAVIRETHAEEYLMAVAYCTNRLREEGHLVGPGKGILARSLVAYALGISEIDPIEYDL 429

Query: 403 LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
            F  F +      P   +   +     V++Y+ ++YG+   A +I +       A++DV 
Sbjct: 430 PFTDFQD---SVFPTAVLQTERGLSRRVLQYLCDRYGNGYAAAVIAYSRFNDAKAVKDVS 486

Query: 463 RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
                     D     +        S                         I+  L+   
Sbjct: 487 HVCGY-QRFWDASSAEVWLQDNAKKS-------------------------IADGLKDCI 520

Query: 523 RHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
              S  +  + + ++PL+++  + R          F+ K  ++ GL +    G + L ++
Sbjct: 521 YDCSVRSDVLALCNKPLAEVTSIVRFPSGAESTA-FDAKGCDELGLPRLRIAGSRVLQVV 579

Query: 583 QKSLDFLAQRGVKVDLS--LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
           Q +L F+    V           D+   Y LL+   T GI  L+  GM+  L   +    
Sbjct: 580 QDALRFIPDCNVPQVWDDSCSSLDESRVYDLLSAGYTAGIPFLD--GMKSELMQQKLTSF 637

Query: 641 EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            ++I +          +      R     ++  +   +  +   T  +  Y E   +   
Sbjct: 638 AELIDIC----HSRGADRADAVARAMFAYRVAYV-KTLYTIEFMTAMLNSYNEDGARAKL 692

Query: 701 LLSGYSLSEADVLRRAMGK 719
               +       +   M  
Sbjct: 693 ESI-FEEMYCLGIHVRMPN 710



 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 75/198 (37%), Gaps = 17/198 (8%)

Query: 771 VISYQTAWMKTHYPVEFLAASMT--LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
           + +Y+ A++KT Y +EF+ A +    E     K++   ++     I +  P++N      
Sbjct: 659 MFAYRVAYVKTLYTIEFMTAMLNSYNEDGARAKLESIFEEMYCLGIHVRMPNINQSQYYA 718

Query: 829 KV----GDNR-----IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLN 878
                 GD+      I     AI+G+    A  I+        + S  DF  RV  +  N
Sbjct: 719 TAYSSTGDDEKSAYGIQLGFNAIRGISEQLAEEIVSTRNKGSAYRSFNDFIRRVSLEHCN 778

Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF---- 934
              +  L+ AGA DC    R  L Q  +++ +  +     +++   ++            
Sbjct: 779 AGNVNYLIRAGAFDCVNPCRKALAQCGNDLIEAERQYRAAQSHGQGDLLQDVMDASPCAQ 838

Query: 935 -SDKITLEKFSVENSSVR 951
            S    +   S  + + R
Sbjct: 839 KSTDEVVPNGSDWDQTTR 856


>gi|297617183|ref|YP_003702342.1| DNA polymerase III subunit alpha [Syntrophothermus lipocalidus DSM
            12680]
 gi|297145020|gb|ADI01777.1| DNA polymerase III, alpha subunit [Syntrophothermus lipocalidus DSM
            12680]
          Length = 1218

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 174/991 (17%), Positives = 336/991 (33%), Gaps = 209/991 (21%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  S L+G + + ++L+++A     A+AITD   + +  E    A   GI+ + 
Sbjct: 319  VELHLHTVMSTLDGVVKIKDLLERVAEWGHKAVAITDHGAVQAFPEAYDYAKLKGIKLVY 378

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +      K              I++LV   EG + L  LVS+ +L +   ++ RI
Sbjct: 379  GMEGYLVDDLRQK----------QAYHIIILVRNREGLKNLYRLVSKSHL-EGFYRNPRI 427

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L E+  EGLI+ T   +G +   +  N S    +R+ +F        ++ +Q    
Sbjct: 428  LRKQLVEL-REGLILGTACEAGELITGYLQNKSDDELERIASFYD------FLEIQPLMN 480

Query: 192  YD--------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +                    +V+L     LP++AT +  FL    +E    ++     
Sbjct: 481  NEFLVREGRVSSFEDLIQMNRYIVELGERLNLPVIATGDVHFLDP-HHEVFRRILQANKG 539

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
               ++   P                      + +             L      L    +
Sbjct: 540  YEDAEAQAPLYLRTTGEMLAEFAYLGKEKAYQVVVINPN-------RLVEGVEDLQPVPD 592

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                      E E++  A        +          +  R+RL+ EL  I   KFS  +
Sbjct: 593  GNFFPSIPGAEEEIKTLAWEKAYQMYS------RPLPELVRERLERELAAIIDNKFSVLY 646

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------------------- 398
            LI    ++ + ++   VG  RGS   S+ A+ + IT+++PL                   
Sbjct: 647  LIAHKLVKRSNEDGYLVG-SRGSVGSSLVAFLIGITEVNPLVPHYRCPNCFYTEFVNDGS 705

Query: 399  ----------------------RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL  +   +PD D++F  D +    +YV+ 
Sbjct: 706  VECGVDLPDLTCPRCGQRLVRDGHDIPFETFLGFEGDKIPDIDLNFSGDYQPRAHQYVEE 765

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G E V +  T  +L   +A+  V       Y++ + L                     
Sbjct: 766  IFGSEHVFRAGTINTLAEASAIGMV-----KNYAEKNGL--------------------- 799

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAG--IVIGDRPLSQLVPMYRDVR---S 551
                          +L +++ L G+ R    H  G  +V  +R + +  P+        S
Sbjct: 800  --------HLRKGEVLRLARGLAGVKRTTGQHPGGLMVVPRERDVHEFTPLNYPANKAES 851

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
             +  T F+   I +  L+K D LG    T+++     + +         I  DD ET  L
Sbjct: 852  GIITTHFDYHSISE-RLVKLDILGHDDPTMIK-----VLEDMTGYRALDISLDDRETMRL 905

Query: 612  LTTKGT--------------LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
             +                   G+ +  +  +RQ LE  +P    +++ +  L        
Sbjct: 906  FSGVEPLGVTPEAIRSAVGTYGVPEFGTRFVRQMLEVTRPQTFGELVRISGLSHG----- 960

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
                    N +E I +    +  ++     ++ +         +  G    +A  +   +
Sbjct: 961  --TDVWLNNAQELIENGTAPLKEVIATRDDIMTFL--------IHKGMDKKQAFRIMENV 1010

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K      ++          +  I      +  ++      Y F ++HA AY +++++ A
Sbjct: 1011 RKGKGLVREEV-----QAMQEYRIPAWYIDSCQKI-----KYMFPRAHAVAYVMMAFRIA 1060

Query: 778  WMKTHYPVEFLAASMTLEMDNVE---------------------------------KIKK 804
            + K +YP EF AA  ++  ++ +                                  + +
Sbjct: 1061 YYKVYYPREFYAAFFSVRAEDFDAEVILGGYDKVRQRVVEIEKMNSNAAPKDRKLLPVLE 1120

Query: 805  FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
               +      + +P  +       F V    +    +A+ G+G   A  I+EA     F 
Sbjct: 1121 VALEMYARGFRFLPVDLLLSDATRFLVTKKGLLLPFSALPGLGEKAALSIIEARKLGTFA 1180

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            S+ED   R     ++R V+++L   G L   
Sbjct: 1181 SIEDLQFRA---GVSRAVVDTLKRNGCLHDL 1208


>gi|168187670|ref|ZP_02622305.1| DNA Polymerase III alpha chain [Clostridium botulinum C str.
           Eklund]
 gi|169294481|gb|EDS76614.1| DNA Polymerase III alpha chain [Clostridium botulinum C str.
           Eklund]
          Length = 1032

 Score =  294 bits (753), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 156/983 (15%), Positives = 367/983 (37%), Gaps = 91/983 (9%)

Query: 15  QVHSSYSLL---EGALSLNNILDKIAADQQPAIAITDTNNLFS--ALEFSQKACAAGIQP 69
             H+ YS L   +      + +++           T+    +    LE         ++ 
Sbjct: 7   HKHTHYSNLRTIDVITKPIDYIERAKELGHNTYFTTEHG--WGGNVLEAYTLCKENDLKM 64

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I G +            +       +   I+L+    EG++ +  ++S   L        
Sbjct: 65  IFGVEAY--------YVDNRLEKDRSNNHIILIALNREGFKDINRIISEANL-SGYYYKP 115

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           RI    +  +  + +I+ T   +G   R F     +  E+ ++     F +  Y+ +Q H
Sbjct: 116 RIDKELILSLNPKNVIITTACIAG---RLFKTKDYE--EEFVIPLLNHFKNHFYLEVQSH 170

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
           +    Y   Q+++L   ++L L+  N+S ++  +D +  D+ +                 
Sbjct: 171 QQQSEY-NKQILELKLKYDLSLIHANDSHYIHSKDSKYRDMFLKAK-------GIFYEDE 222

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               L        +     + + N  +I    +  L         F ++       ++++
Sbjct: 223 GSFILDYPDYDEIVERYEKQGVLNKEQIQESLNNTLIFDKCEDLEFDKEIKIPKVHKDKD 282

Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             +            + +        +Y++ +  E++++ +     YF++  + ++ A  
Sbjct: 283 SNKLLKTIISNEWKKERSNICRDKWNEYKKAIKEEVDIVEKTNMEDYFILDYEIVKKAVN 342

Query: 370 NNI--PVGPGRGSGAGSVTAYALTITDID--PLRFSLLFERFLNPDR----MSMPDFDID 421
                    GRGS         L  T+ID      +L   RF++  R     S+PD D++
Sbjct: 343 EYKAVLTRTGRGSAPSFYINKLLGFTNIDRVSAPITLYPTRFMSTTRILQTRSLPDIDLN 402

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           +     D VI+  ++  G + V  +I +  LQ  +A R   ++     ++ + + K + +
Sbjct: 403 WS--NIDPVIKASKDILGEDGVYFMIAYKPLQNSSAFRLWCKSKGFNINEYNEIAKNLDD 460

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                   + I +   FR                          +      ++ D+P+S+
Sbjct: 461 YLEDEKWGEIIEESKIFRGVIE--------------------SVAPSPCSFLLLDKPISE 500

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            + + +    +      +    ++   +K D+L +   +++ K  + + +  +     L 
Sbjct: 501 EIGLIK--VGNQICCCLDGYNCDQYKYLKNDYLTVSVWSIISKVYEMINE-PIDTIQQLE 557

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
              D + ++L     T  + Q +S+     ++   P  I +I A V+  RPG    +  +
Sbjct: 558 NKVDDKVWNLYKLGLTATLNQADSNYATPLIKKYSPKSIAEISAWVASIRPGFASLMSNF 617

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS-EADVLRRAMGKK 720
                 ++   +    +D +L+++   ++YQE +M+    L          + + A  K 
Sbjct: 618 LE----RKPYTTGVKELDNLLQDSYHYMMYQESIMKYLVWLGIAEDETYGIIKKIAKKKF 673

Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            ++E++  KE+ + G  KN  ++    N ++++   + Y FN SH+ +  + S   A++K
Sbjct: 674 KEKELEVLKEKLLKGWIKNVGTEEGFENTWQVVNDASKYSFNASHSLSVGIDSLYGAYLK 733

Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIYYS 838
            ++P+E+    + +   + E+  K   +   FNI+I+PP       ++      N IY  
Sbjct: 734 ANHPLEYYTVVLNMYEGDTEETSKIVDELSYFNIKILPPKFRHSKSEYMCDKEQNSIYKG 793

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK-KLNRRVLESLVFAGALDCFGYS 897
           L++IK +    A  + E   ++ ++   +    +++K  +N R L+ L+       FG S
Sbjct: 794 LSSIKYISKQVADELFELR-NEKYNDFIEVLYDLNTKTSINSRQLDILIKLNYFSEFGKS 852

Query: 898 RMQL-LQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENS-------- 948
           +  L +  L +     + ++K +     ++       ++ K T + F   +         
Sbjct: 853 KRLLKITGLADSLLNKKQIKKEKL-NELSLTEDVVRKYAQKETEKLFKDIDMNSLIKEIM 911

Query: 949 ----------SVRFENEQRVLGF 961
                       + + E   LG+
Sbjct: 912 QGIKNQSISIKDQLQAEIEYLGY 934


>gi|157273447|gb|ABV27346.1| DNA polymerase III alpha subunit [Candidatus Chloracidobacterium
            thermophilum]
          Length = 445

 Score =  294 bits (753), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 89/274 (32%), Positives = 133/274 (48%), Gaps = 4/274 (1%)

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SH+  Y +++Y+TA++K HYP  F AA +T E+ + +K+ ++ + AR   ++I+PP VN 
Sbjct: 47   SHSVCYGILAYRTAYLKAHYPSHFWAAVLTSELSDSDKVARYIECARAQGVEILPPDVNV 106

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVL 882
                F     RI + L AIKG+G  T   I+EA     PF SL D   R+D K LNRRVL
Sbjct: 107  SHHGFTATGGRIRFGLMAIKGIGEATVDAILEARQKGGPFRSLFDLTKRLDPKALNRRVL 166

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT-FSDKITLE 941
            ESLV +GALD    SR Q   +++   +Y     ++      ++F     T  + +  L 
Sbjct: 167  ESLVKSGALDSLPGSRAQKFAAIEAALEYGLQAHRDAATGQASLFDTTSSTDPAPESQLP 226

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI--RGNNIRLAA 999
            +            E+  LGFY SGHPL  ++  L       Y E        G  +R+  
Sbjct: 227  QVPEWTEQESLAGEKASLGFYLSGHPLATFRETLAAFKSLSYAELAEQAPGPGQVVRMGG 286

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +V +   K T+KG R    T  +     E   +P
Sbjct: 287  IVSNFVVKNTKKGDRFAVFTLEDETGSIEVIAWP 320


>gi|163785584|ref|ZP_02180146.1| DNA polymerase III alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879148|gb|EDP73090.1| DNA polymerase III alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 243

 Score =  293 bits (750), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 69/234 (29%), Positives = 110/234 (47%), Gaps = 4/234 (1%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           S  F HL +HS YSLL+GA+ +  +  K       A+A+TD  N+F A+EF Q+    G+
Sbjct: 2   SKDFTHLHLHSHYSLLDGAIKIPELAKKAKEYGYKAVALTDHGNIFGAIEFYQEMKKVGV 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTP-FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           +PIIG +         K      +        ++L      G++ L++L S  Y  +   
Sbjct: 62  KPIIGMEAYFTNNRFEKKGEGSDSILADKNYHLILHAKDKTGFKNLMKLSSLAYT-EGFY 120

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
              RI    L++   EGLI  T    G I           A +     K +FG+ LY  +
Sbjct: 121 YKPRIDWELLEKYH-EGLICQTACLKGFIPHLLSKGKFDEAYEYGKRLKDIFGEDLYFEI 179

Query: 187 QRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           Q +   ++      +++LA   ++ +VATN+S +L+EED EAHDV+ A+     
Sbjct: 180 QINGLEEQEIANKGILELAEKLDVKVVATNDSHYLNEEDAEAHDVIKALQMKMT 233


>gi|293363769|ref|ZP_06610510.1| putative DNA polymerase III DnaE [Mycoplasma alligatoris A21JP2]
 gi|292552635|gb|EFF41404.1| putative DNA polymerase III DnaE [Mycoplasma alligatoris A21JP2]
          Length = 973

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 262/960 (27%), Positives = 436/960 (45%), Gaps = 101/960 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  ++ YS L   + L  + +        A+++TD NN+F+  EF   +    I+P+IG 
Sbjct: 6   LHTNTEYSFLNSTIKLTELFELAKQKNISALSMTDINNMFALGEFLNLSKQYQIKPLIGI 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++                      S ++     +GY  L ++          + S  I L
Sbjct: 66  EI-----------------EQKNVSFMVFAKNYDGYVLLNKI--------AFEVSKNIEL 100

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
           + +    +  LI++   ++G + +                    F +  +          
Sbjct: 101 N-IDLFNSNNLIIIDHLTNGFVAKGIEIP---------------FKNNFWF--------- 135

Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
               S+            +       L +   +A   L +  ++ V   +       +  
Sbjct: 136 ---NSK-----KLLNDQTIYAPVKKVLLKNQNQALKALQSTGNNKVYDFEYEDYFNDN-- 185

Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
                       D  +     ++  ++    + +  P     + +   DI  E +  L  
Sbjct: 186 ------------DFKDVNILVLQNIKKLVESIDIKIPDNSLKLAQFKTDI--ENDQYLYM 231

Query: 314 KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
             +  L+    + A    +      +RL+FE   I ++ F  YFLI+ D + +A+KN I 
Sbjct: 232 LCLNSLKKLENEFA---SFDKTFVLERLNFEFETIKKLGFVNYFLIINDVLSYARKNGIY 288

Query: 374 VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
           VGPGRGS AGS+ ++ L IT I+PL+++LLFERFLN  R+S+PD DID   DRRDE+ +Y
Sbjct: 289 VGPGRGSAAGSLISFLLEITQINPLKYNLLFERFLNIQRVSLPDIDIDIQDDRRDEIAQY 348

Query: 434 VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
           +  KYG++  A I TF S+ AK A+RD+GR L +P  +VD + K         ++     
Sbjct: 349 IVEKYGYQNTAFISTFQSIGAKMAIRDIGRYLNIPLKKVDSISKS------IDLNEDLKT 402

Query: 494 DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                R  +     +  LLE++ ++EGL R    H AGI+I DR ++ + P      +++
Sbjct: 403 ASKSNRSFKAEIEELPELLELALQIEGLPRQQGMHPAGIIICDREITNIAPT-HANTANM 461

Query: 554 PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP---FDDHETYH 610
              Q  +  +EK GL+K DFLGLKTL++++     + +      L        ++++T+ 
Sbjct: 462 AQVQLTLNNLEKYGLLKIDFLGLKTLSIIRDIESVIPEEYKFDFLLKNNPSILNNNDTFR 521

Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
           +L    T GIFQLES GM+ A++ ++ D   D++A++SL+RPGP+  I  Y   K   + 
Sbjct: 522 ILNEGLTEGIFQLESPGMKSAIKKVEIDSFNDLVAIISLFRPGPMQFINDYAKGKKDSKL 581

Query: 671 IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
           I  IHPL D ++KET GVI+YQEQ+MQI Q +S  S S+AD+LRRA+ KK +  +   K+
Sbjct: 582 IEKIHPLYDEIVKETFGVIVYQEQIMQIVQKVSNMSFSQADLLRRAISKKDENLIHSGKK 641

Query: 731 RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            FI    KN I   +   I++ +  FADYGFNKSHA AYA ++Y+ A+ KT+Y   F  A
Sbjct: 642 EFIQNGLKNNIELNVLEKIYKRIEMFADYGFNKSHAVAYAYLTYKMAYYKTNYKNVFYRA 701

Query: 791 SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
            +T        I K+ ++ ++ N+ +  P +N       V    ++  +  IKGVG    
Sbjct: 702 LITSANGTHLTINKYVKETKKINLPVASPDINRSKNYVVVSGGILFLPINMIKGVGGAAL 761

Query: 851 RHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI- 908
             I+E    +  F+S  +   R+    +   +L  L+ +  L  FG +   LL SL    
Sbjct: 762 SKILEQRDKNGVFNSFFETYLRLRLAGVGEAILLLLIKSNTLRIFG-NCAALLNSLSLAK 820

Query: 909 -------QKYAQWVEKNRTNKHENI-FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
                   K  +          E + F         K+ L    ++  +     E  +LG
Sbjct: 821 NYFETFKLKMTRQKIDETNYDQELLEFIKSNDLSDQKLILSDREIDLEAD---YELELLG 877


>gi|322648191|gb|EFY44658.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
          Length = 321

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 98/319 (30%), Positives = 159/319 (49%), Gaps = 19/319 (5%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      
Sbjct: 1   MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AGI+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    
Sbjct: 60  AGIKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGY 109

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
           G     I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++
Sbjct: 110 GAAGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFL 168

Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            L R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +   
Sbjct: 169 ELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDP 228

Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            RPR  +P  Y+++  EM  +F+D+PEALENTVEIA+RC+  +++       +   +   
Sbjct: 229 KRPRNYSPQQYMRSIDEMCELFADIPEALENTVEIAKRCNVTVRLGE-----YFLPQFPT 283

Query: 303 IQKEEENELRNKAVAGLEV 321
                E+ L  K   G   
Sbjct: 284 GDMTTEDYLVKKIERGARR 302


>gi|229105232|ref|ZP_04235881.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-28]
 gi|228678158|gb|EEL32386.1| DNA polymerase III subunit alpha [Bacillus cereus Rock3-28]
          Length = 533

 Score =  292 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 151/424 (35%), Positives = 246/424 (58%), Gaps = 16/424 (3%)

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +L    T G+FQLES GMR  L G++P+  EDI+A+ SLYRPGP++ I  +   K+GK K
Sbjct: 1    MLGRGDTTGVFQLESGGMRNVLRGLKPNEFEDIVAVNSLYRPGPMEQIPTFIESKHGKRK 60

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            I  +HP + P+LK T GVI+YQEQ+MQIA  L+G+SL EAD+LRRA+ KK ++ +D++++
Sbjct: 61   IEYLHPDLKPILKRTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQERQ 120

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             F+ G  +NG  +T A  I++L+ +FA+YGFN+SHA AY++I YQ A++K +Y +EF+ A
Sbjct: 121  HFVQGCLRNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMTA 180

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTA 850
             ++  + N +KI ++ ++ ++    ++PPS+     +F++  N I YSL +I+ +G  T 
Sbjct: 181  LLSSAIGNEDKIVQYIRETKRKGFHVLPPSLQKSGYNFQIEGNAIRYSLLSIRNIGMATV 240

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
              ++E    K F+ L +FC R+ +K +  R LE+ V++G  D FG SR  L +SL    +
Sbjct: 241  TALLEERESKMFEDLFEFCLRMPAKFVTERNLEAFVWSGCFDDFGISRTNLWKSLKGALE 300

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
            YA                 + G    K    +    +   +   E+  LGFY S +P   
Sbjct: 301  YANLAR-------------DLGDAVPKSKYVQGEELSFIEQLNKEKEALGFYLSSYPTAQ 347

Query: 971  YKPILRKMGIKGYEESVATIRGNNI-RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            Y  + +++ I    +  A      + R    + S +  +T+K  ++ ++TF +   E EA
Sbjct: 348  YVKLAKELEIPSLAQ--AMRNKKKVQRAIVYITSVRVIRTKKLQKMAFITFCDQNDEMEA 405

Query: 1030 NFFP 1033
              FP
Sbjct: 406  VVFP 409


>gi|218682009|ref|ZP_03529610.1| DNA polymerase III, alpha subunit [Rhizobium etli CIAT 894]
          Length = 564

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 105/460 (22%), Positives = 193/460 (41%), Gaps = 41/460 (8%)

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
               +    Y ++    TLG+FQ+ES      L  ++P    D++  V++ RPGPI   +V
Sbjct: 7    HGDEGKPVYAMMGRADTLGVFQIESRAQMSMLPRLKPTVFYDLVIEVAIVRPGPIQGDMV 66

Query: 661  YN-----NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
            +       ++     I      ++ +L+ T GV ++QEQ MQIA   +G+  +EAD LRR
Sbjct: 67   HPYLKRREQRARNIPIEYPSKELEAVLERTLGVPLFQEQAMQIAITAAGFKPAEADKLRR 126

Query: 716  AMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
            AM    +   +   ++RFI G +  G ++  A   F  +  F +YGF +SHAA++A++ Y
Sbjct: 127  AMATFKRTGTIGNFEKRFIEGMASKGYTEEFARQCFNQIKGFGEYGFPESHAASFALLVY 186

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831
             ++W+K +YP  F AA +  +        +  +DAR+  ++I+P  +N    D  +    
Sbjct: 187  ASSWLKAYYPDVFCAAMLNSQPMGFYAPAQLVRDAREHGVKILPVDINESDWDCDLEAAA 246

Query: 832  -------------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
                                + +      IKGV       +++      + S+ D   R 
Sbjct: 247  FDSDAVDFRHREMREIIKARHAVRLGFRQIKGVSDKEMELLVKNRGKG-YGSVRDLWLR- 304

Query: 873  DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
                L + V+E L  A A    G SR   L ++  +       +     +   +F   + 
Sbjct: 305  --SGLQKSVIERLADADAFQSLGLSRRDALWAVRAL-------DVKSAAEELPLFEQARH 355

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG 992
                     K        +   + R L      HP+   +  L++MGI    + +    G
Sbjct: 356  VDLQAEPATKLPEMLPGEQVIEDYRYLSLSLKAHPVSFLREELQRMGITRNVDLLKVANG 415

Query: 993  NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              + +A +V+ +Q+  + KG  + ++T  +      A  +
Sbjct: 416  KRVTIAGLVLVRQRPGSAKG--VIFMTLEDETGVANAIVW 453


>gi|292669878|ref|ZP_06603304.1| DNA polymerase III, alpha subunit [Selenomonas noxia ATCC 43541]
 gi|292648675|gb|EFF66647.1| DNA polymerase III, alpha subunit [Selenomonas noxia ATCC 43541]
          Length = 1258

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 168/1013 (16%), Positives = 313/1013 (30%), Gaps = 218/1013 (21%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF---SQKACAAG-- 66
            V L  H+  S L+  +    +++  A    PA+AITD   + +  E    ++     G  
Sbjct: 343  VELHAHTKMSALDAVVPPKMLVETAARWGWPAVAITDHGVVQAFPEAMNTARALKKKGVD 402

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL---- 122
            I+ I G +  +    +                I+ L     G   L +LVS  ++     
Sbjct: 403  IKVIYGMEGYLVDSSD----------DARAYHIIFLAKNKTGLYNLYKLVSLSHIRYFRG 452

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             + +   R+  + L++   EG+I+ +   +G + R           + +  F        
Sbjct: 453  TKKRGRPRVPRAVLEQY-REGIIVGSACEAGELIRGIVAGRPDEELEEIAKFYD------ 505

Query: 183  YVNLQR---------------HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            ++ +Q                H   D R    +V  LA     PL+AT +  FL+ ED  
Sbjct: 506  FLEIQPIHNNDFLKIDDRFPIHTDEDLRDINRKVDALAKKLNKPLIATCDVHFLNPEDA- 564

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
               V  A+       +    +        +       +     A E  V   RR +  ++
Sbjct: 565  ---VYRAMLQKANGYRDAERQPPLYLRTTDEMLAEFDYLGAERAYECVVANPRRIADEVE 621

Query: 287  VHAPILPRFIEKECDDIQKE--EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
               PI             +E  E +  R + + G                Q    RL+ E
Sbjct: 622  HFLPIPDELYAPTVPGADREIQEMSYARARKLYG------------ENLPQIVADRLELE 669

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----- 399
            L  I R  FS  ++I    ++ +  +   VG  RGS   S  A  + +T+++PL      
Sbjct: 670  LKPILRHGFSALYIIAQRLVKKSNDDGYLVG-SRGSVGSSFVATMIGVTEVNPLPPHYRC 728

Query: 400  ------------------------------------FSLLFERFLNPDRMSMPDFDIDFC 423
                                                 ++ F  FL  D   +PD D++F 
Sbjct: 729  RHCQYNKFIDDGSVGSGFDLPPMDCPVCGTPLTKDGHNIPFAVFLGFDGDKVPDIDLNFS 788

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             D +    +Y +  +G   V +  T   LQ K A                          
Sbjct: 789  GDYQPVAHKYTEVLFGKMNVFRAGTISGLQDKNAYGYA---------------------- 826

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQ 541
                 +    +    +           +  + +   G+      HA GI  V  +  +  
Sbjct: 827  -----MHYYEEQGETKGR-------PYIEHMMRGCMGVKATTGQHAGGIMVVPRNMDVHY 874

Query: 542  LVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
              P+ R      SD   T F+   I +  L+K D LG    T+++   +   +    +  
Sbjct: 875  FTPIQRPANNMESDTLTTHFDYHSISE-RLVKLDILGHDDPTVIKMLEELTHRDPETIPF 933

Query: 599  SLIPFDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                     T           L    GT GI +  +S  ++ ++   PDC  D++ +   
Sbjct: 934  DDPATMSIFTSTEALGIRPEELGANMGTYGIPEFRTSFTQKMIDDSNPDCFADLVRISGF 993

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
               G    +    +              +      T    I     +    + +      
Sbjct: 994  SH-GTNVWLGNAQD--------------LIKAGTSTLKDAISARDDIMNYLMQNRIDPLL 1038

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            +      + K      D             GI +    +  ++      Y F ++HA AY
Sbjct: 1039 SFKTMENVRKGKGIAPDVV-----EKLRAGGIPEWYIESCQKI-----KYLFPRAHATAY 1088

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------------------------- 800
             ++ Y+ A+ K HYP+ + AA  ++  D  +                             
Sbjct: 1089 VMMGYRIAFCKVHYPLAYYAAYFSIRADEFDANIIAKGQTAVKQAIDALNAEAREHRGKL 1148

Query: 801  --------KIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTAR 851
                     + +   +         P  +     + F + +  +     A+ G+G   A+
Sbjct: 1149 DNKKQDILIVLQLAWEMYLRGYSCEPVDLYESDAEKFILREKSLLPPFTALPGMGQKAAQ 1208

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQ 903
             I+EA     F S+ED  +R     +    ++ L   G LD     ++++L  
Sbjct: 1209 AIVEARKYGHFISIEDLAARAH---VPAPAIDVLRAHGCLDGMTESNQVELFA 1258


>gi|304437423|ref|ZP_07397382.1| DNA polymerase III PolC [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369679|gb|EFM23345.1| DNA polymerase III PolC [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 1254

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 168/1011 (16%), Positives = 313/1011 (30%), Gaps = 214/1011 (21%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC---AAG-- 66
            V L  H+  S L+  +    +++  A    PA+AITD   + +  E    A      G  
Sbjct: 339  VELHAHTKMSALDAVVPPKVLVETAARWGWPAVAITDHGVVQAFPEAMNTARALAKKGID 398

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL---- 122
            I+ I G +  +   ++                I+ L     G   L +LVS  ++     
Sbjct: 399  IKIIYGMEGYLVDGED----------DARAFHIIFLAKNKTGLYNLYKLVSLSHIRYFRG 448

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             + +   R+  + L++   EG+I+ +   +G + R           + +  F        
Sbjct: 449  TKKRGRPRVPRAVLEQY-REGIIVGSACEAGELIRGIVAGRPDAELEEMAKFYD------ 501

Query: 183  YVNLQRHRGYD----------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            ++ +Q     D                R    +V +LA     PL+AT +  FL+ ED  
Sbjct: 502  FLEIQPIHNNDFLKFDDRFPMQTDEDLRDINRKVDELARKLGKPLIATCDVHFLNPEDA- 560

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
             +  ++  A+    +++  P                      E +          +    
Sbjct: 561  VYRAMIQKANGYRDAERQPPLYLRTTEEMLAEFDYLGAERAYECVVTNPRRIAEETERFL 620

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
                 L   +     D + +E +  R + + G                +    RL+ EL 
Sbjct: 621  PIPDELYAPMVP-GADREIQEMSYARARKLYG------------ENLPKIVSDRLELELK 667

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------- 399
             I R  F+  ++I    ++ +  +   VG  RGS   S  A  + +T+++PL        
Sbjct: 668  PILRHGFAALYIIAQRLVKKSNDDGYLVG-SRGSVGSSFVATMIGVTEVNPLPPHYRCPH 726

Query: 400  ----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQD 425
                                               ++ F  FL  D   +PD D++F  D
Sbjct: 727  CQYNRFIDDGSVGSGFDLPSEDCPVCGTPLIKDGHNIPFAVFLGFDGDKVPDIDLNFSGD 786

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +    +Y +  +G   V +  T   LQ K A                            
Sbjct: 787  YQPVAHKYTEVLFGKMNVFRAGTIAGLQDKNAYGYA------------------------ 822

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLV 543
               +    D    +           +  + +   G+      HA GI  V  D  +    
Sbjct: 823  ---MHYYEDQGEAKGR-------PYIEHMMRGCMGVKATTGQHAGGIMVVPRDMDVHYFT 872

Query: 544  PMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+ R      SD   T F+   I +  L+K D LG    T+++   +   +    +    
Sbjct: 873  PIQRPANNMESDTLTTHFDYHSISE-RLVKLDILGHDDPTVIKMLEELTHRDPETIPFDD 931

Query: 601  IPFDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                   T           L    GT GI +  +S  ++ ++   PDC  D++ +     
Sbjct: 932  PATMSIFTSTDALGITPEDLGANMGTYGIPEFRTSFTQKMIDDSNPDCFADLVRISGFSH 991

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
             G    +    +              +      T    I     +    + +G     + 
Sbjct: 992  -GTNVWLGNAQD--------------LIKAGTSTLKDAISARDDIMNYLMQNGIEPLLSF 1036

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
                 + K      D             GI +    +  ++      Y F ++HA AY +
Sbjct: 1037 KTMENVRKGRGIAPDVV-----EKLRAGGIPEWYIESCQKI-----KYLFPRAHATAYVM 1086

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVE------------------------------- 800
            + Y+ A+ K HYP+ + AA  ++     +                               
Sbjct: 1087 MGYRIAFCKVHYPLAYYAAYFSIRAAEFDANIISKGKDAVRAAIDALLAEAREHRGKLDN 1146

Query: 801  ------KIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHI 853
                   + +   +         P  +     + F + +N +     AI GVG   A+ I
Sbjct: 1147 KKQDTLIVLQLAWEMYLRGFSCEPVDLYASDAEKFILHENSLLPPFTAIPGVGQKAAQAI 1206

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC-FGYSRMQLLQ 903
            +EA  D  F S+ED  +R     +    +E L   G LD     ++++L  
Sbjct: 1207 VEARRDGRFISVEDLATRAH---VPAPAIEVLRTHGCLDGMMESNQVELFA 1254


>gi|303231452|ref|ZP_07318183.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            atypica ACS-049-V-Sch6]
 gi|302513889|gb|EFL55900.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            atypica ACS-049-V-Sch6]
          Length = 1241

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 155/976 (15%), Positives = 322/976 (32%), Gaps = 177/976 (18%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  S  +  +S+ ++   +     PA+AITD   + +  E        G++ I 
Sbjct: 318  VELHLHTKMSDKDALVSIKDLFKTVKKWGHPAVAITDHGVVQAFPEAQALGKELGVKVIY 377

Query: 72   GCQLDIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            G +  +    +L+         +        I+LL     G + L +++S  +L +  K+
Sbjct: 378  GVEGYLVDDADLEKELSLDVVKRKDEAPRYHIILLAQNMVGLRNLYKMISISHL-EYYKR 436

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+  S ++E   EG+++ +   +G + +A    +S+     + +F        Y+ +Q
Sbjct: 437  RPRLPRSIIEE-HREGILIGSACEAGELMQAIVKGASKEELLTIASFYD------YLEIQ 489

Query: 188  RHRG----------YDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM- 232
             H             D          V++L       + AT +  +L+ E+    ++++ 
Sbjct: 490  PHTNNTFLIRKGIVPDEQALIDMNKTVIELGEALNKRVCATCDVHYLTPEEKIYREIMLT 549

Query: 233  -AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
                           R T +                 +A E  V   R  +  ++   P+
Sbjct: 550  ACGFPDADEQPDLHLRTTDEMLASFPYLSEE------KAYEVVVANTRAINDSIEDIKPV 603

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
                   + +      +           +              +  ++RLD+EL+ I   
Sbjct: 604  PDGTYSPKIEG----ADEAFTEMCYVNAKKIYGDPL------PRVVQERLDYELDCIISN 653

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------ 399
             +   + I    ++ +  +   VG  RGS   S  A    IT+++PL             
Sbjct: 654  GYGVLYYIAHKLVKKSLDDGYLVG-SRGSVGSSFAATMSEITEVNPLPPHYICPECKWSE 712

Query: 400  -----------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
                                           + F  FL  +   +PD D++F  D + + 
Sbjct: 713  FYENGEYAGGFDLPRRDCPNCGHPLQTNGHDIPFAIFLGFEGDKVPDIDLNFSGDYQAKA 772

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
             +Y +  +G + V +  T G++  K A   V +                           
Sbjct: 773  HKYTEELFGRDNVFKAGTIGTIADKTAFGYVKKY-------------------------- 806

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMYRD 548
                     E R        L  +++    +      H  GI++  R +      P+   
Sbjct: 807  --------AELRNIQARSGFLEHLAKGFTNVKNTTGQHPGGIMVCPRDMDVHHFTPIQHP 858

Query: 549  VR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                 S +  T F+   IE   + K D LG    T+++     + +    +D   IPFDD
Sbjct: 859  ANKKESGVLTTHFDYHSIE-GRMTKLDILGHDDPTIIR-----MLEDLTGIDAKTIPFDD 912

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L ++   +G+   +  G + A   +     + +  ++   RP    ++V  +   
Sbjct: 913  PRTLSLFSSTEGIGLTPEQLQGDQVASLAVPECGTKFVRGMLEDSRPQTFSDLVRISGFS 972

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK----KI 721
            +G    +     +           I     +    +  G +   +  +   + K    + 
Sbjct: 973  HGTNVWLDNAQELIKNGTCKLNEAISTRDDVMNFLIHRGMNKKNSFFVMENVRKGKGIEK 1032

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            + +  +    F     +N I +    +  ++      Y F ++HA AY +++++ AW K 
Sbjct: 1033 RNKQGQATTEFEKEMRENNIPEWFIESCKKI-----SYLFPRAHAVAYVMMAFRIAWFKV 1087

Query: 782  HYPVEFLAASMTLEMDNVEKIKK---------------------------------FCQD 808
            ++P+ F AA  ++     +                                        +
Sbjct: 1088 YHPLAFYAAYFSIRAKAFDLRIMTGDLNTQLKEFNRIKALDRGASPKEKDLMSALEVSME 1147

Query: 809  ARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
              Q   + +   +       F + D  +     AI  +G T A  I+E    KPF SL+D
Sbjct: 1148 MYQRGYRFINVDIQHSGARRFSIKDGALLPPFLAIDSLGETVADAIVEEREAKPFTSLKD 1207

Query: 868  FCSRVDSKKLNRRVLE 883
               R    K++  ++E
Sbjct: 1208 LQRRC---KVSATIIE 1220


>gi|213022841|ref|ZP_03337288.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. 404ty]
          Length = 346

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 120/318 (37%), Positives = 171/318 (53%), Gaps = 4/318 (1%)

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            KK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W
Sbjct: 2    KKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 61

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYY 837
            +K HYP EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D   I Y
Sbjct: 62   LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVY 121

Query: 838  SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L+ +GA D  G 
Sbjct: 122  GIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP 181

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENE 955
             R  L+ SL +  K A    K       ++F    +     + +          V  + E
Sbjct: 182  HRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGE 241

Query: 956  QRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSR 1014
            +  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++ +   T++G+R
Sbjct: 242  RETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNR 301

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            IG  T  + +   E   F
Sbjct: 302  IGICTLDDRSGRLEVMLF 319


>gi|238019269|ref|ZP_04599695.1| hypothetical protein VEIDISOL_01133 [Veillonella dispar ATCC 17748]
 gi|237863968|gb|EEP65258.1| hypothetical protein VEIDISOL_01133 [Veillonella dispar ATCC 17748]
          Length = 1263

 Score =  290 bits (743), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 152/978 (15%), Positives = 323/978 (33%), Gaps = 200/978 (20%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  S  +  +S+ ++   +     PA+AITD   + +  E        G++ I 
Sbjct: 337  VELHLHTKMSDKDALVSVKDLFKTVKKWGHPAVAITDHGVVQAFPEAQALGKELGVKVIY 396

Query: 72   GCQLD------IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G +        +   + L +  + K        I+LL     G + L +++S  +L +  
Sbjct: 397  GVEGYLIDDEIVARDEELVVDKKKKKEKDKRYHIILLAKNMVGLRNLYKMISISHL-EHY 455

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-QVAEKRLLTFKKLFGDRLYV 184
            K   R+  S ++E   EG+I+ +   +G + ++    ++ +   +    +        Y+
Sbjct: 456  KVRPRLPRSVIEE-HREGIIIGSACEAGELMQSIVRGATKEELLEIASFYD-------YL 507

Query: 185  NLQRH----------RGYDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             +Q H             D          V++L      P+ AT +  +L+ E+    ++
Sbjct: 508  EIQPHTNNMFLVRKGLMPDEQALIDMNKTVIELGEALNKPVCATCDVHYLTPEEKIYREI 567

Query: 231  LM--AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            ++                R T +                  A E  V   R  +  ++  
Sbjct: 568  MLTACGYPDADEQPDLHLRTTDEMLASFPYLSEEK------AYEVVVTNTRAINDSIEDI 621

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             P+       + +      +           +              +  ++RLD+EL+ I
Sbjct: 622  KPVPDGTYSPKIEG----ADEAFTEMCYRNAKAIYGDPL------PRVVQERLDYELDCI 671

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                +   + I    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 672  ISNGYGVLYYIAHKLVKKSLDDGYLVG-SRGSVGSSFAATMSEITEVNPLPPHYVCPNCK 730

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + F  FL  +   +PD D++F  D +
Sbjct: 731  HSEFFEKGEYAGGFDLPRKDCPECGHALQTNGHDIPFAIFLGFEGDKVPDIDLNFSGDYQ 790

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +  +Y +  +G + V +  T G++  K A   V +                        
Sbjct: 791  AKAHKYTEELFGRDNVFKAGTIGTIADKTAFGYVKKY----------------------- 827

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPM 545
                    +  R+ +      + L   ++    +      H  GI++  R +      P+
Sbjct: 828  --------AEIRDIQARSGFFEHL---AKGFTNVKNTTGQHPGGIMVCPRDMDVHHFTPI 876

Query: 546  YRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                    S +  T F+   IE   + K D LG    T+++     + +    +D   IP
Sbjct: 877  QHPANKKESGVLTTHFDYHSIE-GRMTKLDILGHDDPTIIR-----MLEDLTGIDAKTIP 930

Query: 603  FDDHETYHLLTTKGTLG---------------IFQLESSGMRQALEGMQPDCIEDIIALV 647
            FDD +T  L ++   +G               + +  +  +R  LE  +P    D++ + 
Sbjct: 931  FDDPKTLSLFSSTEGIGLTPEQLQGDQVASLAVPECGTKFVRGMLEDSRPQTFSDLVRIS 990

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
                 G    +    +       I +    ++  +     V+ +    +    +   +S 
Sbjct: 991  GFSH-GTNVWLDNAQDL------IKNGTCKLNEAISTRDDVMNF----LIHRGMDRKHSF 1039

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
               + +R+  G + + +  +    F +   +N I +    +  ++      Y F ++HA 
Sbjct: 1040 FVMENVRKGKGIEKRNKQGQATTEFEAEMRENNIPEWFIESCKKI-----SYLFPRAHAV 1094

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------- 804
            AY +++++ AW K ++P+ F AA  ++     +                           
Sbjct: 1095 AYVMMAFRIAWFKVYHPLAFYAAYFSIRAKAFDLRIMTGDLKTQMTEFNRIKALDRAASP 1154

Query: 805  ----------FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHI 853
                         +  Q   + +   +       F + D  +     AI  +G T A  I
Sbjct: 1155 KDKDLMSALEVSMEMYQRGYRFVNVDIQHSEARRFSIKDGALLPPFLAIDSLGETVADAI 1214

Query: 854  MEASADKPFDSLEDFCSR 871
            +    ++PF SL+D   R
Sbjct: 1215 VAEREERPFTSLKDLQRR 1232


>gi|303228949|ref|ZP_07315759.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            atypica ACS-134-V-Col7a]
 gi|302516363|gb|EFL58295.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            atypica ACS-134-V-Col7a]
          Length = 1241

 Score =  290 bits (743), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 154/976 (15%), Positives = 322/976 (32%), Gaps = 177/976 (18%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  S  +  +S+ ++   +     PA+AITD   + +  E        G++ I 
Sbjct: 318  VELHLHTKMSDKDALVSIKDLFKTVKKWGHPAVAITDHGVVQAFPEAQALGKELGVKVIY 377

Query: 72   GCQLDIDMQDNLKM----TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            G +  +    +L+         +        I+LL     G + L +++S  +L +  K+
Sbjct: 378  GVEGYLVDDADLEKELSLDVVKRKDEAPRYHIILLAQNMVGLRNLYKMISISHL-EYYKR 436

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              R+  S ++E   EG+++ +   +G + +A    +S+     + +F        Y+ +Q
Sbjct: 437  RPRLPRSIIEE-HREGILIGSACEAGELMQAIVKGASKEELLTIASFYD------YLEIQ 489

Query: 188  RHRG----------YDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM- 232
             H             D          V++L       + AT +  +L+ E+    ++++ 
Sbjct: 490  PHTNNTFLIRKGIVPDEQALIDMNKTVIELGEALNKRVCATCDVHYLTPEEKIYREIMLT 549

Query: 233  -AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
                           R T +                 +A E  +   R  +  ++   P+
Sbjct: 550  ACGFPDADEQPDLHLRTTDEMLASFPYLSEE------KAYEVVIANTRAINDSIEDIKPV 603

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
                   + +      +           +              +  ++RLD+EL+ I   
Sbjct: 604  PDGTYSPKIEG----ADEAFTEMCYVNAKKIYGDPL------PRVVQERLDYELDCIISN 653

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------ 399
             +   + I    ++ +  +   VG  RGS   S  A    IT+++PL             
Sbjct: 654  GYGVLYYIAHKLVKKSLDDGYLVG-SRGSVGSSFAATMSEITEVNPLPPHYICPECKWSE 712

Query: 400  -----------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
                                           + F  FL  +   +PD D++F  D + + 
Sbjct: 713  FYENGEYAGGFDLPRRDCPNCGHPLQTNGHDIPFAIFLGFEGDKVPDIDLNFSGDYQAKA 772

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
             +Y +  +G + V +  T G++  K A   V +                           
Sbjct: 773  HKYTEELFGRDNVFKAGTIGTIADKTAFGYVKKY-------------------------- 806

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMYRD 548
                     E R        L  +++    +      H  GI++  R +      P+   
Sbjct: 807  --------AELRNIQARSGFLEHLAKGFTNVKNTTGQHPGGIMVCPRDMDVHHFTPIQHP 858

Query: 549  VR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                 S +  T F+   IE   + K D LG    T+++     + +    +D   IPFDD
Sbjct: 859  ANKKESGVLTTHFDYHSIE-GRMTKLDILGHDDPTIIR-----MLEDLTGIDAKTIPFDD 912

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T  L ++   +G+   +  G + A   +     + +  ++   RP    ++V  +   
Sbjct: 913  PRTLSLFSSTEGIGLTPEQLQGDQVASLAVPECGTKFVRGMLEDSRPQTFSDLVRISGFS 972

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK----KI 721
            +G    +     +           I     +    +  G +   +  +   + K    + 
Sbjct: 973  HGTNVWLDNAQELIKNGTCKLNEAISTRDDVMNFLIHRGMNKKNSFFVMENVRKGKGIEK 1032

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
            + +  +    F     +N I +    +  ++      Y F ++HA AY +++++ AW K 
Sbjct: 1033 RNKQGQATTEFEKEMRENNIPEWFIESCKKI-----SYLFPRAHAVAYVMMAFRIAWFKV 1087

Query: 782  HYPVEFLAASMTLEMDNVEKIKK---------------------------------FCQD 808
            ++P+ F AA  ++     +                                        +
Sbjct: 1088 YHPLAFYAAYFSIRAKAFDLRIMTGDLNTQLKEFNRIKALDRGASPKEKDLMSALEVSME 1147

Query: 809  ARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
              Q   + +   +       F + D  +     AI  +G T A  I+E    KPF SL+D
Sbjct: 1148 MYQRGYRFINVDIQHSGARRFSIKDGALLPPFLAIDSLGETVADAIVEERETKPFTSLKD 1207

Query: 868  FCSRVDSKKLNRRVLE 883
               R    K++  ++E
Sbjct: 1208 LQRRC---KVSATIIE 1220


>gi|80159747|ref|YP_398491.1| DNA Polymerase III alpha chain [Clostridium phage c-st]
 gi|78675337|dbj|BAE47759.1| DNA Polymerase III alpha chain [Clostridium phage c-st]
          Length = 1032

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 160/983 (16%), Positives = 358/983 (36%), Gaps = 91/983 (9%)

Query: 15  QVHSSYSLL---EGALSLNNILDKIAADQQPAIAITDTNNLFS--ALEFSQKACAAGIQP 69
             H+ YS L   +      + + +           T+    +    LE         ++ 
Sbjct: 7   HKHTHYSNLRTIDVITKPIDYIKRAKELGHNTYFTTEHG--WGGNVLEAYTLCKENNLKM 64

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I G +            +       +   I+L+    +G++ +  ++S   L        
Sbjct: 65  IFGVEAY--------YVDNRLEKDRSNNHIILIALNRDGFKDINRIISEANL-SGYYYKP 115

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           RI    +  +  + +I+ T   +G   R F     +  EK ++     F D  Y+ +Q H
Sbjct: 116 RIDKELILSLNPKNVIVTTACIAG---RLFKTKDYE--EKFVIPLLNHFKDHFYLEVQSH 170

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
           +    Y   Q+++L + + L L+  N+S ++   D +  D+ +                 
Sbjct: 171 KQQSEY-NKQILELKFKYNLSLMHANDSHYIYSRDAKYRDMFLKAK-------GIIYEDE 222

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               L   +    +     + + N  +I    +  L        +F ++       ++++
Sbjct: 223 GGFILDYPNYDEIVKRYEKQGVLNKEQIQESLNNTLIFDKCEDLKFDKEIKIPKVHKDKD 282

Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             +            +          +Y + +  E++++ +     YF++  + ++ A  
Sbjct: 283 SNKLLKTIISNEWKKERNNICRDKWNEYEKAIKEEVDIVQKTNMEDYFILDYEIVKKAVD 342

Query: 370 NNI--PVGPGRGSGAGSVTAYALTITDID--PLRFSLLFERFLNPDR----MSMPDFDID 421
                    GRGS         L  T+ID      +L   RF++  R     S+PD D++
Sbjct: 343 EYKAVLTRTGRGSAPSFYINKLLGFTNIDRVSAPITLYPTRFMSTTRILQTRSLPDIDLN 402

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
                 + VI+  ++  G + V  +I +  LQ  +A R   ++     ++ + + K + +
Sbjct: 403 --WANIEPVIKASKDILGEDGVYFMIAYKPLQNSSAFRLWCKSKGFNINEYNEIAKNLDD 460

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                   + I +   FR                          +      ++ D+P+S+
Sbjct: 461 YIEDEKWGKIIEESKIFRGVIE--------------------SVAPSPCSFLLLDKPISE 500

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            + + +    +      +    ++   +K D+L +   +++ K  + + +  +     L 
Sbjct: 501 EIGLIK--VGNQICCCLDGYNCDQYKYLKNDYLTVSVWSIISKVYEMIRE-PIDTIQQLE 557

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
              D   ++L     T  + Q +S+     ++   P  I +I A V+  RPG    +  +
Sbjct: 558 NKVDDRVWNLYKLGLTATLNQADSNYATPLIKKYSPKSIAEISAWVASIRPGFASLMSNF 617

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS-EADVLRRAMGKK 720
             RK     +      +D +L+++   ++YQE +M+    L          + + A  K 
Sbjct: 618 LERKPYTTGV----KELDNLLQDSYHYMMYQESIMKYLVWLGIAEDETYGIIKKIAKKKF 673

Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            ++E++  KE+ + G  KN   K    N ++++   + Y FN SH+ +  + S   A++K
Sbjct: 674 KEKELEALKEKLLKGWIKNVGEKEGFENTWQVVNDASKYSFNASHSLSVGIDSLYGAYLK 733

Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIYYS 838
            +YP+E+    + +   + E+  K   +   FNI I+ P       ++      N IY  
Sbjct: 734 ANYPLEYYTVVLNMYEGDTEETSKIVDELNYFNITILSPKFRYSKSEYMCDKEQNSIYKG 793

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK-KLNRRVLESLVFAGALDCFGYS 897
           L++IK +    A  + E   ++ ++   +  S +++K  +N R L+ L+       FG S
Sbjct: 794 LSSIKYISKQVADELFELR-NEKYNDFIEVLSDLNTKTSINSRQLDILIKLNYFSEFGKS 852

Query: 898 RMQLLQSLDNIQKYAQWVE-KNRTNKHENIFAHEKGTFSDKITLEKFSVEN--------- 947
             +LL+  +         + K       ++       ++ K T + F   +         
Sbjct: 853 -KKLLKITELADNLLNKKQIKKEKLNELSLTEDIVRKYAQKETEKLFKDIDINSLIKEIM 911

Query: 948 ---------SSVRFENEQRVLGF 961
                       + + E   LG+
Sbjct: 912 QGIKNQSISIKDQLQAEIEYLGY 934


>gi|313895031|ref|ZP_07828588.1| DNA polymerase III, alpha subunit, Gram-positive type [Selenomonas
            sp. oral taxon 137 str. F0430]
 gi|312975926|gb|EFR41384.1| DNA polymerase III, alpha subunit, Gram-positive type [Selenomonas
            sp. oral taxon 137 str. F0430]
          Length = 1259

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 177/1011 (17%), Positives = 322/1011 (31%), Gaps = 214/1011 (21%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF---SQKACAAG-- 66
            V L  H+  S L+  +    +++  A    PA+AITD   + +  E    ++     G  
Sbjct: 344  VELHAHTKMSALDAVVPPKTLVETAARWGWPAVAITDHGVVQAFPEAMNTARALKKKGVD 403

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL---- 122
            I+ I G +  +      + +N           I+ L     G   L +LVS  ++     
Sbjct: 404  IKIIYGMEGYLIDDPAQQRSN----------HIIFLAKNKTGLYNLYKLVSISHIRFFRG 453

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             + +    +  + L+E   +GLI+ +   +G + RA     S    +R+  F        
Sbjct: 454  SKKRGRPCVPRAILEEY-RDGLIVGSACEAGELIRAIVRGESDEELERIAAFYD------ 506

Query: 183  YVNLQ----------------RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            ++ +Q                R     R    +V +LA     PL+AT +  FL+ ED  
Sbjct: 507  FLEIQPIHNNDFLKIDDRFPIRDDEDLRNINRKVSELADKLGKPLIATCDVHFLNPEDA- 565

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
               V  A+       +    +        +       +     A E  V   RR +  ++
Sbjct: 566  ---VYRAMLQKANGYRDADRQPPLYLRTTDEMLAEFDYLGAERAYECVVTNPRRIADEVE 622

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               PI             +E E     KA            +      +    RLD EL 
Sbjct: 623  EFLPIPDELYAPMVPGADREIEEMSYRKARR----------LYGENLPKIVSDRLDLELK 672

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------- 399
             I +  FS  ++I    ++ +  +   VG  RGS   S  A  + +T+++PL        
Sbjct: 673  PILKHGFSALYIIAQRLVKKSNDDGYLVG-SRGSVGSSFVATMIGVTEVNPLPPHYRCKH 731

Query: 400  ----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQD 425
                                               ++ F  FL  D   +PD D++F  D
Sbjct: 732  CQYNKFITDGSVGSGFDLPSMDCPVCGTPLIKDGHNIPFAVFLGFDGDKVPDIDLNFSGD 791

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +    +Y +  +G   V +  T   LQ K A           Y       + +      
Sbjct: 792  YQPVAHKYTEVLFGKMNVFRAGTIAGLQDKNA-----------YGYAMHYYEDMGVQKGR 840

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLV 543
            P                        +  + +   G+      HA GI  V  D  +    
Sbjct: 841  P-----------------------YIEHMMRGCMGVKATTGQHAGGIMVVPRDMDVHYFT 877

Query: 544  PMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+ R      SD   T F+   I +  L+K D LG    T+++   +   +    +    
Sbjct: 878  PIQRPANNMESDTLTTHFDYHSISE-RLVKLDILGHDDPTVIKMLEELTHRDPETIPFDD 936

Query: 601  IPFDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                   T           L    GT GI +  +S  ++ ++   PDC  D++ +     
Sbjct: 937  PATMSIFTSTDALGITPEELGANMGTYGIPEFRTSFTQKMIDDSNPDCFADLVRISGFSH 996

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
             G    +    +              +      T    I     +    + +G     + 
Sbjct: 997  -GTNVWLGNAQD--------------LIKAGTSTLKDAISARDDIMNYLMQNGIDPLLSF 1041

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
                 + K      D  ++ +       GI +    +  ++      Y F ++HA AY +
Sbjct: 1042 KTMENVRKGKGIAPDVVEKLY-----AGGIPEWYVESCQKI-----KYLFPRAHATAYVM 1091

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVE------------------------------- 800
            + Y+ A+ K HYP+ + AA  ++  D  +                               
Sbjct: 1092 MGYRIAFCKVHYPLAYYAAYFSIRADEFDANIIAKGRDAIKAAIDALNAEAREHRGKLDN 1151

Query: 801  ------KIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHI 853
                   + +   +         P  + T   + F + +  +   L A+ G+G   A+ I
Sbjct: 1152 KKQDTLIVLQLAWEMYLRGFACEPVDIYTSNAETFILHEKSLLPPLTALPGMGQKAAQAI 1211

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQ 903
            +EA  D  F S+ED  +R     +    +E L   G L      ++++L  
Sbjct: 1212 VEARKDGVFISIEDLATRAH---VPAPSIEVLRAHGCLAGMTESNQVELFA 1259


>gi|320529719|ref|ZP_08030798.1| DNA polymerase III, alpha subunit [Selenomonas artemidis F0399]
 gi|320138080|gb|EFW29983.1| DNA polymerase III, alpha subunit [Selenomonas artemidis F0399]
          Length = 1259

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 178/1011 (17%), Positives = 322/1011 (31%), Gaps = 214/1011 (21%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF---SQKACAAG-- 66
            V L  H+  S L+  +    +++  A    PA+AITD   + +  E    ++     G  
Sbjct: 344  VELHAHTKMSALDAVVPPKTLVETAARWGWPAVAITDHGVVQAFPEAMNTARALKKKGVD 403

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL---- 122
            I+ I G +  +      + +N           I+ L     G   L +LVS  ++     
Sbjct: 404  IKIIYGMEGYLIDDPAQQRSN----------HIIFLAKNKTGLYNLYKLVSISHIRFFRG 453

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             + +    +  + L+E   +GLI+ +   +G + RA     S    +R+  F        
Sbjct: 454  SKKRGRPCVPRAILEEY-RDGLIVGSACEAGELIRAIVRGESDEELERIAAFYD------ 506

Query: 183  YVNLQ----------------RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            ++ +Q                R     R    +V +LA     PL+AT +  FL+ ED  
Sbjct: 507  FLEIQPIHNNDFLKIDDRFPIRDDEDLRNINRKVSELAEKLGKPLIATCDVHFLNPEDA- 565

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
               V  A+       +    +        +       +  +  A E  V   RR +  ++
Sbjct: 566  ---VYRAMLQKANGYRDADRQPPLYLRTTDEMLAEFDYLGVERAYECVVTNPRRIADEVE 622

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               PI             +E E     KA            +      Q    RLD EL 
Sbjct: 623  EFLPIPDELYAPMVPGADREIEEMSYRKARR----------LYGENLPQIVSDRLDLELK 672

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------- 399
             I +  FS  ++I    ++ +  +   VG  RGS   S  A  + +T+++PL        
Sbjct: 673  PILKHGFSALYIIAQRLVKKSNDDGYLVG-SRGSVGSSFVATMIGVTEVNPLPPHYRCKH 731

Query: 400  ----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQD 425
                                               ++ F  FL  D   +PD D++F  D
Sbjct: 732  CQYNKFITDGSVGSGFDLPSMDCPVCGTPLIKDGHNIPFAVFLGFDGDKVPDIDLNFSGD 791

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +    +Y +  +G   V +  T   LQ K A           Y       + +      
Sbjct: 792  YQPVAHKYTEVLFGKMNVFRAGTIAGLQDKNA-----------YGYAMHYYEDMGVQKGR 840

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLV 543
            P                        +  + +   G+      HA GI  V  D  +    
Sbjct: 841  P-----------------------YIEHMMRGCMGVKATTGQHAGGIMVVPRDMDVHYFT 877

Query: 544  PMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+ R      SD   T F+   I +  L+K D LG    T+++   +   +    +    
Sbjct: 878  PIQRPANNMESDTLTTHFDYHSISE-RLVKLDILGHDDPTVIKMLEELTHRDPETIPFDD 936

Query: 601  IPFDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                   T           L    GT GI +  +S  ++ ++   PDC  D++ +     
Sbjct: 937  PATMSIFTSTDALGITPEELGANMGTYGIPEFRTSFTQKMIDDSNPDCFADLVRISGFSH 996

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
             G    +    +              +      T    I     +    + +G     + 
Sbjct: 997  -GTNVWLGNAQD--------------LIKAGTSTLKDAISARDDIMNYLMQNGIDPLLSF 1041

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
                 + K      D  ++ +       GI +    +  ++      Y F ++HA AY +
Sbjct: 1042 KTMENVRKGKGIAPDVVEKLY-----AGGIPEWYVESCQKI-----KYLFPRAHATAYVM 1091

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVE------------------------------- 800
            + Y+ A+ K HYP+ + AA  ++  D  +                               
Sbjct: 1092 MGYRIAFCKVHYPLAYYAAYFSIRADEFDANIIAKGRDAIKAAIDALNAEAREHRGKLDN 1151

Query: 801  ------KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
                   + +   +         P  + T     F + +  +   L A+ G+G   A+ I
Sbjct: 1152 KKQDTLIVLQLAWEMYLRGFACEPVDIYTSNAATFILHEKSLLPPLTALPGMGQKAAQAI 1211

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLLQ 903
            +EA  D  F S+ED  +R     +    +E L   G L      ++++L  
Sbjct: 1212 VEARKDGVFISIEDLATRAH---VPAPSIEVLRAHGCLAGMTESNQVELFA 1259


>gi|254416530|ref|ZP_05030282.1| hypothetical protein MC7420_2412 [Microcoleus chthonoplastes PCC
           7420]
 gi|196176734|gb|EDX71746.1| hypothetical protein MC7420_2412 [Microcoleus chthonoplastes PCC
           7420]
          Length = 230

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 119/233 (51%), Gaps = 10/233 (4%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SFV L +HS YSLL+GA  L  ++D+       AIA+TD   ++ A+E  +     GI+P
Sbjct: 2   SFVGLHIHSDYSLLDGASQLPQLVDRAVELGMSAIALTDHGVMYGAIELIKVCRGKGIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD----QG 125
           IIG ++ +   D    T +           V+L    +GY+ L++L +  +L        
Sbjct: 62  IIGNEMYVINGDIQDKTKK----KQRKYHQVVLAKNTQGYKNLVKLTTISHLKGIQGTGI 117

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
            Q   I   +LQ+   +GLI+ +G   G + +A      Q A +    +K++FGD  Y+ 
Sbjct: 118 FQRPCINKEFLQQY-RDGLIVTSGCLGGEVPQAILKGDVQKARELAQWYKEVFGDDYYLE 176

Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
           +Q H    DR    ++V++A   E+ +VATN+S F+S  D EAHD L+ + + 
Sbjct: 177 IQDHGSIEDRIVNVEIVKIARELEIKIVATNDSHFISCYDVEAHDALLCIQYG 229


>gi|255658412|ref|ZP_05403821.1| DNA polymerase III, alpha subunit [Mitsuokella multacida DSM 20544]
 gi|260849748|gb|EEX69755.1| DNA polymerase III, alpha subunit [Mitsuokella multacida DSM 20544]
          Length = 1329

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 162/995 (16%), Positives = 315/995 (31%), Gaps = 203/995 (20%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC--AAGIQP 69
            V L  H++ S ++  +S+ +++        PA+A+TD   + +  + ++      + ++ 
Sbjct: 422  VELHAHTTMSSMDAVVSVKDLIKTADRWGWPAVAVTDHGVVQAFPDAAKALSSCKSDLKV 481

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G +  +  +D+L+              I++L     G + L +LVS  +L     +  
Sbjct: 482  IYGMEGYLVQKDHLQK---------RANHIIMLAKNPNGLRNLYQLVSLAHLR-YFHRQP 531

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            R+    ++E  + GL++ +   +G + RA     +      + +F        Y+ +Q  
Sbjct: 532  RLPKHIIEEYRS-GLLIGSACEAGELIRAIEEQRTDEELMEIASFYD------YLEIQPI 584

Query: 190  RGYD-----------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
               D                      +V ++A     PLVAT +  FL+ ED        
Sbjct: 585  HNNDFLKRSDKYPDIQTDEDLIQINLKVAEIAKKLGKPLVATCDVHFLNPEDSIYR---- 640

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
            A+            +        +       +     A E  V   R+ +  ++   PI 
Sbjct: 641  AILMKGKGFDDAELQPPLYLRTTDEMLKEFEYLGEEAAYEAVVTNPRKIADQIERFKPIP 700

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
                  +        + E+R  +         +         +    RL  EL  I    
Sbjct: 701  DDLYSPQIPG----ADEEIREMSYKKARALYGENL------PKIVEDRLKQELKPIIGHG 750

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------- 399
            FS  +LI    ++ +  +   VG  RGS   S  A    IT+++PL              
Sbjct: 751  FSVLYLIAQRLVKKSNDDGYLVG-SRGSVGSSFIATMTGITEVNPLPPHWRCPHCQYSKF 809

Query: 400  ----------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
                                          + F  FL  D   +PD D++F    +    
Sbjct: 810  ITDGSYGCGYDLPDKVCPVCGTPLIKDGHDIPFAVFLGFDGDKVPDIDLNFSGAYQPVAH 869

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +Y +  +G + V +  +  ++  K A   V +                            
Sbjct: 870  KYTEILFGKDNVYRAGSIQTVADKTAFGYVKK---------------------------- 901

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDV 549
                  F E +     +  + +++    G+      H AGI  V  +  +    P+    
Sbjct: 902  ------FYEEKGVKKHISYIDKMAHGCMGVKSTTGQHPAGIMVVPRNMDVHFFTPIQHPA 955

Query: 550  RSDL--PVTQFNMKWIEKAGLIKFDFLGLKTL---TLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +T         + L+K D LG        +L+       +     D + +   
Sbjct: 956  NDMNCGTITTHFDYHSISSRLVKLDILGHDDPTVIKMLEDLTHRDPKTIPFDDAATMSIF 1015

Query: 605  DHET------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            +  T        L  T GT GI +  +   RQ ++  QPD   D++ +            
Sbjct: 1016 NSTTALGVTPEELGATSGTFGIPEFRTPFTRQMIDDTQPDVFSDLVRISGFSH-----GT 1070

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             V+                +    + T    I     + +  + +G     +      + 
Sbjct: 1071 DVWLGNAQ----------DLIRSGQCTIKNAISARDDIMMYLIHNGIDPLLSFKTMEKVR 1120

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K      D           K GI +    +  ++      Y F ++HA AY +++Y+ A+
Sbjct: 1121 KGRGIADDVV-----EILRKGGIPEWFIESCQKI-----KYLFPRAHATAYVMMAYRIAY 1170

Query: 779  MKTHYPVEFLAASMTLEMDNVE-----------------------------------KIK 803
             K HYP+ + AA  ++     +                                    + 
Sbjct: 1171 CKVHYPLAYYAAYFSIRAAEFDANVIARGKDYVGQQIKELEAMGKEKKLDAKQNATLIVL 1230

Query: 804  KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
            +   +            +     D F +  N +   +AA+ G+G   A+ I+EA  +  F
Sbjct: 1231 QLAWEMYLRGYSCERVDLYRSGADKFIIDGNALLPPIAALAGMGQKAAQGIVEARKEGAF 1290

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             S+ED   R     +++  +E L   G LD    S
Sbjct: 1291 TSIEDLRRR---SGISKTNIEILRSHGCLDGMSES 1322


>gi|269798019|ref|YP_003311919.1| DNA polymerase III subunit alpha [Veillonella parvula DSM 2008]
 gi|269094648|gb|ACZ24639.1| DNA polymerase III, alpha subunit [Veillonella parvula DSM 2008]
          Length = 1263

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 149/976 (15%), Positives = 321/976 (32%), Gaps = 196/976 (20%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  S  +  +S+ ++   +     PA+AITD   + +  E        G++ I 
Sbjct: 337  VELHLHTKMSDKDALVSVKDLFKTVKKWGHPAVAITDHGVVQAFPEAQALGKELGVKVIY 396

Query: 72   GCQLD------IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G +        +   + L +  + K        I+LL     G + L +++S  +L +  
Sbjct: 397  GVEGYLIEDETVTKDEELVLDKKKKKEKDKRYHIILLAKNMVGLRNLYKMISISHL-EHY 455

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-QVAEKRLLTFKKLFGDRLYV 184
            K   R+  S ++E   EG+I+ +   +G + ++    ++ +   +    +        Y+
Sbjct: 456  KVRPRLPRSVIEE-HREGIIIGSACEAGELMQSIVRGATKEELLEIASFYD-------YL 507

Query: 185  NLQRH----------RGYDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             +Q H             D          V++L      P+ AT +  +L+ E+    ++
Sbjct: 508  EIQPHTNNMFLVRKGLMPDEQALIDMNKTVIELGEALNKPVCATCDVHYLTPEEKIYREI 567

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            ++  A     + +              S          E +             ++    
Sbjct: 568  ML-TACGYPDADEQPDLHLRTTDEMLASFPYLSEEKRYEVVVTNTRAINDSIEDIK---- 622

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
                  +       +  +           +              +  ++RLD+EL+ I  
Sbjct: 623  ---PVPDGTYSPKIEGADEAFTEMCYRNAKAIYGDPL------PRVVQERLDYELDCIIS 673

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              +   + I    ++ +  +   VG  RGS   S  A    IT+++PL            
Sbjct: 674  NGYGVLYYIAHKLVKKSLDDGYLVG-SRGSVGSSFAATMSEITEVNPLPPHYVCPNCKYS 732

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + F  FL  +   +PD D++F  D + +
Sbjct: 733  EFFEKGEYAGGFDLPRKDCPKCGHALQTNGHDIPFAIFLGFEGDKVPDIDLNFSGDYQAK 792

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
              +Y +  +G + V +  T G++  K A   V +                          
Sbjct: 793  AHKYTEELFGRDNVFKAGTIGTIADKTAFGYVKKY------------------------- 827

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMYR 547
                  +  R+ +  +   + L   ++    +      H  GI++  R +      P+  
Sbjct: 828  ------AEIRDIQARNGFFEHL---AKGFTNVKNTTGQHPGGIMVCPRDMDVHHFTPIQH 878

Query: 548  DVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                  S +  T F+   IE   + K D LG    T+++     + +    +D   IPFD
Sbjct: 879  PANKKESGVLTTHFDYHSIE-GRMTKLDILGHDDPTIIR-----MLEDLTGIDAKTIPFD 932

Query: 605  DHETYHLLTTKGTLG---------------IFQLESSGMRQALEGMQPDCIEDIIALVSL 649
            D +T  L ++   +G               + +  +  +R  LE  +P    D++ +   
Sbjct: 933  DPKTLSLFSSTEGIGLTPEQLQGDQVASLAVPECGTKFVRGMLEDSRPQTFSDLVRISGF 992

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
               G    +    +       I +    ++  +     V+ +    +    +   +S   
Sbjct: 993  SH-GTNVWLDNAQDL------IKNGTCKLNEAISTRDDVMNF----LIHRGMDRKHSFFV 1041

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
             + +R+  G + + +  +    F +   +N I +    +  ++      Y F ++HA AY
Sbjct: 1042 MENVRKGKGIEKRNKQGQATTEFEAEMRENNIPEWFIESCKKI-----SYLFPRAHAVAY 1096

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK------------------------- 804
             +++++ AW K ++P+ F AA  ++     +                             
Sbjct: 1097 VMMAFRIAWFKVYHPLAFYAAYFSIRAKAFDLRIMTGDLKTQLTEFNRIKALDRAASPKD 1156

Query: 805  --------FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIME 855
                       +  Q   + +   +       F + D  +     AI  +G T A  I+E
Sbjct: 1157 KDLMSALEVSMEMYQRGYRFINVDIQHSEARRFSIKDGALLPPFLAIDSLGETVADAIVE 1216

Query: 856  ASADKPFDSLEDFCSR 871
               ++PF SL+D   R
Sbjct: 1217 ERNERPFTSLKDLQRR 1232


>gi|294791899|ref|ZP_06757047.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            sp. 6_1_27]
 gi|294457129|gb|EFG25491.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            sp. 6_1_27]
          Length = 1245

 Score =  288 bits (738), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 153/978 (15%), Positives = 324/978 (33%), Gaps = 200/978 (20%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  S  +  +S+ ++   I     PA+AITD   + +  E        G++ I 
Sbjct: 319  VELHLHTKMSDKDALVSVKDLFKTIKKWGHPAVAITDHGVVQAFPEAQALGKELGVKVIY 378

Query: 72   GCQLD------IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G +        +   +   +  + K        I+LL     G + L +++S  +L +  
Sbjct: 379  GVEGYLIEDETVTKDEEPVLDKKKKKEKDKRYHIILLAKNMVGLRNLYKMISISHL-EHY 437

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-QVAEKRLLTFKKLFGDRLYV 184
            K   R+  S ++E   EG+I+ +   +G + ++    ++ +   +    +        Y+
Sbjct: 438  KVRPRLPRSVIEE-HREGIIIGSACEAGELMQSIVRGATKEELLEIASFYD-------YL 489

Query: 185  NLQRH----------RGYDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             +Q H             D          V++L      P+ AT +  +L+ E+    ++
Sbjct: 490  EIQPHTNNTFLVRKGLMPDEQALIDMNKTVIELGEALNKPVCATCDVHYLTPEEKIYREI 549

Query: 231  LM--AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            ++                R T +                  A E  V   R  +  ++  
Sbjct: 550  MLTACGYPDADEQPDLHLRTTDEMLASFPYLSEEK------AYEVVVTNTRAINDSIEDI 603

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             P+       + +      +           +              +  ++RLD+EL+ I
Sbjct: 604  KPVPDGTYSPKIEG----ADEAFTEMCYRNAKAIYGDPL------PRVVQERLDYELDCI 653

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                +   + I    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 654  ISNGYGVLYYIAHKLVKKSLDDGYLVG-SRGSVGSSFAATMSEITEVNPLPPHYVCPHCK 712

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + F  FL  +   +PD D++F  D +
Sbjct: 713  YSEFFEKGEYAGGFDLPRKDCPKCGHPLQTNGHDIPFAIFLGFEGDKVPDIDLNFSGDYQ 772

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +  +Y +  +G + V +  T G++  K A   V +                        
Sbjct: 773  AKAHKYTEELFGRDNVFKAGTIGTIADKTAFGYVKKY----------------------- 809

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPM 545
                    +  R+ +  +   + L   ++    +      H  GI++  R +      P+
Sbjct: 810  --------AEIRDIQARNGFFEHL---AKGFTNVKNTTGQHPGGIMVCPRDMDVHHFTPI 858

Query: 546  YRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                    S +  T F+   IE   + K D LG    T+++     + +    +D   IP
Sbjct: 859  QHPANKKESGVLTTHFDYHSIE-GRMTKLDILGHDDPTIIR-----MLEDLTGIDAKTIP 912

Query: 603  FDDHETYHLLTTKGTLG---------------IFQLESSGMRQALEGMQPDCIEDIIALV 647
            FDD +T  L ++   +G               + +  +  +R  LE  +P    D++ + 
Sbjct: 913  FDDPKTLSLFSSTEGIGLTPEQLQGDQVASLAVPECGTKFVRGMLEDSRPQTFSDLVRIS 972

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
                 G    +    +       I +    ++  +     V+ +    +    +   +S 
Sbjct: 973  GFSH-GTNVWLDNAQDL------IKNGTCKLNEAISTRDDVMNF----LIHRGMDRKHSF 1021

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
               + +R+  G + + +  +    F +   +N I +    +  ++      Y F ++HA 
Sbjct: 1022 FVMENVRKGKGIEKRNKQGQATTEFEAEMRENNIPEWFIESCKKI-----SYLFPRAHAV 1076

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------- 804
            AY +++++ AW K ++P+ F AA  ++     +                           
Sbjct: 1077 AYVMMAFRIAWFKVYHPLAFYAAYFSIRAKAFDLRIMTGDLKTQLTEFNRIKALDRAASP 1136

Query: 805  ----------FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHI 853
                         +  Q   + +   +       F + D  +     AI  +G T A  I
Sbjct: 1137 KDKDLMSALEVSMEMYQRGYRFINVDIQHSEARRFSIKDGALLPPFLAIDSLGETVADAI 1196

Query: 854  MEASADKPFDSLEDFCSR 871
            +E   ++PF SL+D   R
Sbjct: 1197 VEERNERPFTSLKDLQRR 1214


>gi|302561461|ref|ZP_07313803.1| DNA polymerase III, alpha subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302479079|gb|EFL42172.1| DNA polymerase III, alpha subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 775

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 190/675 (28%), Positives = 313/675 (46%), Gaps = 35/675 (5%)

Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
            ++Y +R+  EL++IA   F+ YFL V+  +   +   I V   RGSGAGS+  + L I 
Sbjct: 94  RREYWERMHRELDIIAHHGFASYFLTVSQVVDDVRHMGIRVA-ARGSGAGSLVNHLLGIA 152

Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
             DP+   LL ERFL+ +R+ +PD DID    RR EV R +  ++G ERVA +    + +
Sbjct: 153 HADPVEHGLLMERFLSKERVVLPDIDIDVESARRLEVYRAIIGRFGAERVAAVAMPETYR 212

Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
            + A+RDVG AL M   ++DR+ K  P+  A      A+ +    R          RL E
Sbjct: 213 VRHAVRDVGAALSMDPDEIDRIAKSFPHIRARDA-RAALEELPELRRLAGEKEKYGRLWE 271

Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
           + + L+ L R  + H  G+++ D  L    P+        P+ QF+   +E  GL+K D 
Sbjct: 272 LVEALDALPRGIAMHPCGVLLSDASLLTRTPVMPTSGEGFPMAQFDKDDVEDLGLLKLDV 331

Query: 574 LGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
           LG++  + +  ++  + +  G ++DL  +P  D  TY L+ +  TLG FQ+ES G R  +
Sbjct: 332 LGVRMQSAMAHAVTEVERATGERIDLDAVPEGDPATYGLIRSTETLGCFQIESPGQRDLV 391

Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
             +QP    D++  +SL+RPGP+   +   +   ++G+  +   HP ++  LK T GV++
Sbjct: 392 GRLQPSTFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRYPHPDLEESLKGTYGVVV 451

Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
           + EQV+ I  +++G    EAD +RR +     E   + K  F   A+  G         +
Sbjct: 452 FHEQVIDIVSVMTGCGRGEADRVRRGLSD--PESQGRIKVWFAQHAAARGYDAETIQRTW 509

Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
           E++  F  YGF K+HA A+AV +YQ+AW+K H+P  F A  +T +     K +    DAR
Sbjct: 510 EIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHDPGMYPK-RLLLADAR 568

Query: 811 QFNIQIMPPSVNTPCVDFKV----------GDNRIYYSLAAIKGVGTTTARHIMEASADK 860
           +  + ++P  VN   V  ++              +  +L+ + G+    A  I      +
Sbjct: 569 RRGVPVLPLDVNKSGVAHRIELVSESKESKEVWGLRLALSDVHGISEAEAARIA---GGQ 625

Query: 861 PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
           P+ SL DF  R      +R +   L   GALD FG +R  +   L  + + A+    +  
Sbjct: 626 PYASLLDFWERARP---SRPLAGRLAQVGALDAFGANRRDMQLHLTELHRGARGGRGD-- 680

Query: 921 NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK-MG 979
                +    +   +               R   E  VL    S H +D +   L   + 
Sbjct: 681 --QLPLSGGRRTAPAG------LPDLTPPERLSAELGVLSMDASHHLMDDHATFLEDLLC 732

Query: 980 IKGYEESVATIRGNN 994
                 +     G  
Sbjct: 733 GLRAAAARDPGTGRR 747


>gi|282850246|ref|ZP_06259625.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            parvula ATCC 17745]
 gi|282579739|gb|EFB85143.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            parvula ATCC 17745]
          Length = 1263

 Score =  288 bits (736), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 153/978 (15%), Positives = 324/978 (33%), Gaps = 200/978 (20%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  S  +  +S+ ++   I     PA+AITD   + +  E        G++ I 
Sbjct: 337  VELHLHTKMSDKDALVSVKDLFKTIKKWGHPAVAITDHGVVQAFPEAQALGKELGVKVIY 396

Query: 72   GCQLDIDMQDNLKMTNQ------GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G +  +   + +    +       K        I+LL     G + L +++S  +L +  
Sbjct: 397  GVEGYLIEDETVIKDEEPVLDKKKKKEKDKRYHIILLAKNMVGLRNLYKMISISHL-EHY 455

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-QVAEKRLLTFKKLFGDRLYV 184
            K   R+  S ++E   EG+I+ +   +G + ++    ++ +   +    +        Y+
Sbjct: 456  KVRPRLPRSVIEE-HREGIIIGSACEAGELMQSIVRGATKEELLEVASFYD-------YL 507

Query: 185  NLQRH----------RGYDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             +Q H             D          V++L      P+ AT +  +L+ E+    ++
Sbjct: 508  EIQPHTNNTFLVRKGLMPDEQALIDMNKTVIELGEALNKPVCATCDVHYLTPEEKIYREI 567

Query: 231  LM--AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            ++                R T +                  A E  V   R  +  ++  
Sbjct: 568  MLTACGYPDADEQPDLHLRTTDEMLASFPYLSEEK------AYEVVVTNTRAINDSIEDI 621

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             P+       + +      +           +              +  ++RLD+EL+ I
Sbjct: 622  KPVPDGTYSPKIEG----ADEAFTEMCYRNAKAIYGDPL------PRVVQERLDYELDCI 671

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                +   + I    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 672  ISNGYGVLYYIAHKLVKKSLDDGYLVG-SRGSVGSSFAATMSEITEVNPLPPHYVCPNCK 730

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + F  FL  +   +PD D++F  D +
Sbjct: 731  YSEFFEKGEYAGGFDLPRKDCPECGHALQTNGHDIPFAIFLGFEGDKVPDIDLNFSGDYQ 790

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +  +Y +  +G + V +  T G++  K A   V +                        
Sbjct: 791  AKAHKYTEELFGRDNVFKAGTIGTIADKTAFGYVKKY----------------------- 827

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPM 545
                    +  R+ +  +   + L   ++    +      H  GI++  R +      P+
Sbjct: 828  --------AEIRDIQARNGFFEHL---AKGFTNVKNTTGQHPGGIMVCPRDMDVHHFTPI 876

Query: 546  YRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                    S +  T F+   IE   + K D LG    T+++     + +    +D   IP
Sbjct: 877  QHPANKKESGVLTTHFDYHSIE-GRMTKLDILGHDDPTIIR-----MLEDLTGIDAKTIP 930

Query: 603  FDDHETYHLLTTKGTLG---------------IFQLESSGMRQALEGMQPDCIEDIIALV 647
            FDD +T  L ++   +G               + +  +  +R  LE  +P    D++ + 
Sbjct: 931  FDDPKTLSLFSSTEGIGLTPEQLQGDQVASLAVPECGTKFVRGMLEDSRPQTFSDLVRIS 990

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
                 G    +    +       I +    ++  +     V+ +    +    +   +S 
Sbjct: 991  GFSH-GTNVWLDNAQDL------IKNGTCKLNEAISTRDDVMNF----LIHRGMDRKHSF 1039

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
               + +R+  G + + +  +    F +   +N I +    +  ++      Y F ++HA 
Sbjct: 1040 FVMENVRKGKGIEKRNKQGQATTEFEAEMRENNIPEWFIESCKKI-----SYLFPRAHAV 1094

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------- 804
            AY +++++ AW K ++P+ F AA  ++     +                           
Sbjct: 1095 AYVMMAFRIAWFKVYHPLAFYAAYFSIRAKAFDLRIMTGDLKTQLTEFNRIKALDRAASP 1154

Query: 805  ----------FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHI 853
                         +  Q   + +   +       F + D  +     AI  +G T A  I
Sbjct: 1155 KDKDLMSALEVSMEMYQRGYRFINVDIQHSEARRFSIKDGALLPPFLAIDSLGETVADAI 1214

Query: 854  MEASADKPFDSLEDFCSR 871
            +E   ++PF SL+D   R
Sbjct: 1215 VEERNERPFTSLKDLQRR 1232


>gi|294793759|ref|ZP_06758896.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            sp. 3_1_44]
 gi|294455329|gb|EFG23701.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            sp. 3_1_44]
          Length = 1219

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 154/978 (15%), Positives = 324/978 (33%), Gaps = 200/978 (20%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  S  +  +S+ ++   I     PA+AITD   + +  E        G++ I 
Sbjct: 293  VELHLHTKMSDKDALVSVKDLFKTIKKWGHPAVAITDHGVVQAFPEAQALGKELGVKVIY 352

Query: 72   GCQLDIDMQDNLKMTNQ------GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G +  +   + +    +       K        I+LL     G + L +++S  +L +  
Sbjct: 353  GVEGYLIEDETVIKDEEPVLDKKKKKEKDKRYHIILLAKNMVGLRNLYKMISISHL-EHY 411

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-QVAEKRLLTFKKLFGDRLYV 184
            K   R+  S ++E   EG+I+ +   +G + ++    ++ +   +    +        Y+
Sbjct: 412  KVRPRLPRSVIEE-HREGIIIGSACEAGELMQSIVRGATKEELLEVASFYD-------YL 463

Query: 185  NLQRH----------RGYDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             +Q H             D          V++L      P+ AT +  +L+ E+    ++
Sbjct: 464  EIQPHTNNTFLVRKGLMPDEQALIDMNKTVIELGEALNKPVCATCDVHYLTPEEKIYREI 523

Query: 231  LM--AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            ++                R T +                  A E  V   R  +  ++  
Sbjct: 524  MLTACGYPDADEQPDLHLRTTDEMLASFPYLSEEK------AYEVVVTNTRAINDSIEDI 577

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             P+       + +      +           +              +  ++RLD+EL+ I
Sbjct: 578  KPVPDGTYSPKIEG----ADEAFTEMCYRNAKAIYGDPL------PRVVQERLDYELDCI 627

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                +   + I    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 628  ISNGYGVLYYIAHKLVKKSLDDGYLVG-SRGSVGSSFAATMSEITEVNPLPPHYVCPNCK 686

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + F  FL  +   +PD D++F  D +
Sbjct: 687  YSEFFEKGEYAGGFDLPRKDCPECGHALQTNGHDIPFAIFLGFEGDKVPDIDLNFSGDYQ 746

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +  +Y +  +G + V +  T G++  K A   V +                        
Sbjct: 747  AKAHKYTEELFGRDNVFKAGTIGTIADKTAFGYVKKY----------------------- 783

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPM 545
                    +  R+ +  +   + L   ++    +      H  GI++  R +      P+
Sbjct: 784  --------AEIRDIQARNGFFEHL---AKGFTNVKNTTGQHPGGIMVCPRDMDVHHFTPI 832

Query: 546  YRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                    S +  T F+   IE   + K D LG    T+++     + +    +D   IP
Sbjct: 833  QHPANKKESGVLTTHFDYHSIE-GRMTKLDILGHDDPTIIR-----MLEDLTGIDAKTIP 886

Query: 603  FDDHETYHLLTTKGTLG---------------IFQLESSGMRQALEGMQPDCIEDIIALV 647
            FDD +T  L ++   +G               + +  +  +R  LE  +P    D++ + 
Sbjct: 887  FDDPKTLSLFSSTEGIGLTPEQLQGDQVASLAVPECGTKFVRGMLEDSRPQTFSDLVRIS 946

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
                 G    +    +       I +    ++  +     V+ +    +    +   +S 
Sbjct: 947  GFSH-GTNVWLDNAQDL------IKNGTCKLNEAISTRDDVMNF----LIHRGMDRKHSF 995

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
               + +R+  G + + +  +    F +   KN I +    +  ++      Y F ++HA 
Sbjct: 996  FVMENVRKGKGIEKRNKQGQATTEFEAEMRKNNIPEWFIESCKKI-----SYLFPRAHAV 1050

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------- 804
            AY +++++ AW K ++P+ F AA  ++     +                           
Sbjct: 1051 AYVMMAFRIAWFKVYHPLAFYAAYFSIRAKAFDLRIMTGDLKTQLTEFNRIKALDRAASP 1110

Query: 805  ----------FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHI 853
                         +  Q   + +   +       F + D  +     AI  +G T A  I
Sbjct: 1111 KDKDLMSALEVSMEMYQRGYRFINVDIQHSEARRFSIKDGALLPPFLAIDSLGETVADAI 1170

Query: 854  MEASADKPFDSLEDFCSR 871
            +E   ++PF SL+D   R
Sbjct: 1171 VEERNERPFTSLKDLQRR 1188


>gi|4566842|gb|AAD23482.1|AF117853_1 DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|4566843|gb|AAD23483.1|AF117854_1 DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|4566844|gb|AAD23484.1|AF117855_1 DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|4566845|gb|AAD23485.1|AF117856_1 DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|4566846|gb|AAD23486.1|AF117857_1 DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|4566847|gb|AAD23487.1|AF117858_1 DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 356

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 131/372 (35%), Positives = 199/372 (53%), Gaps = 21/372 (5%)

Query: 26  ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKM 85
              +  ++ K+AA   PA+A+TD  NL   ++F   A   G++PIIG    +        
Sbjct: 1   LSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL-------- 52

Query: 86  TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLI 145
             Q +     +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI
Sbjct: 53  --QSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLI 109

Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLA 204
           +L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A
Sbjct: 110 VLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVA 169

Query: 205 YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSI 263
             ++LP+VATN  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +
Sbjct: 170 EQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCEL 229

Query: 264 FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
           F+D+PEAL N+VEIA+RC+  +++       +            E+ L  K+  GLE RL
Sbjct: 230 FADIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERL 284

Query: 324 A---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                    +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGS
Sbjct: 285 EFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGS 344

Query: 381 GAGSVTAYALTI 392
           GAGS+ AYAL I
Sbjct: 345 GAGSLVAYALKI 356


>gi|167717945|ref|ZP_02401181.1| error-prone DNA polymerase [Burkholderia pseudomallei DM98]
          Length = 716

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 200/706 (28%), Positives = 319/706 (45%), Gaps = 42/706 (5%)

Query: 163 SSQVAEKRLLTFKKLFGDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLS 221
            + V + +L  F  LFG+R  + L Q  R  D     QV        + +VA  +     
Sbjct: 26  RADVLDAQLAWFDALFGERARLGLVQLQRALDGAHREQVRAAGERRGMHIVALGDVTMHI 85

Query: 222 EEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
                  D + A+        +    + P+     R+          +AL  T  +   C
Sbjct: 86  RSCKPLQDTMTAIRLGMP-IAECGHALAPNGEQHLRTRQRIAQLFPADALAQTCRMLDAC 144

Query: 282 SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            F L       P  I            + L  +  AG   R   G           RQR+
Sbjct: 145 HFSLDDLRYEYPHEIVPAG----HTPTSYLAQETWAGARRRYPDGV------PDTVRQRI 194

Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
           +FEL +IA +K+  YFL V D +++A+  +I    GRGS A SV  Y + +T+++P + +
Sbjct: 195 EFELALIADLKYEPYFLTVYDIVKYARSKDIL-CQGRGSAANSVVCYCIGVTEVNPQQST 253

Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
           LLFERFL+ +R   PD D+DF   RR+EVI+Y+  KYGH+R A      + + + ALR+ 
Sbjct: 254 LLFERFLSRERGEPPDIDVDFEHQRREEVIQYLYEKYGHDRAALAAAVSTYRPRGALRET 313

Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
           G+AL +    V+R+ K           L   A            P +    EI+ +L   
Sbjct: 314 GKALGVDPMLVERVAKEHRWFDGSRDLLARFASV----GLDPEVPLIRTWAEIAARLLNF 369

Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
            RH S H+ G V+    L++LVP+         V Q++   +E  GL+K D L L  L+ 
Sbjct: 370 PRHLSQHSGGFVVSRGKLTRLVPVENAAMEGRRVIQWDKDDLEALGLMKVDVLALGMLSA 429

Query: 582 LQKSLDFLAQRG-------VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
           L ++ D +               L  IP DD  TY ++    T+G+FQ+ES      L  
Sbjct: 430 LHRAFDMITAWRGPPLPDGRPFRLEHIPQDDEATYDMICRADTVGVFQIESRAQMSMLPR 489

Query: 635 MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE-------KIVSIHPLIDPMLKETQG 687
           ++P    D++  VS+ RPGPI    V+   +  +        +I      ++ +L+ T G
Sbjct: 490 LRPRGYYDLVVQVSIVRPGPIQGGAVHPYLERRRIAAGEAHGEITYPSEALERVLERTLG 549

Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIA 746
           + I+QEQVMQIA + +G++  EAD LRRAM     K ++ K  ER ++G  + G S+  A
Sbjct: 550 IPIFQEQVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGKYHERIVAGMLERGYSREFA 609

Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
             IFE +  F +YGF +SHAA++A ++Y ++W+K H P  FLAA +  +        +  
Sbjct: 610 EQIFEQIKGFGEYGFPESHAASFAKLAYASSWLKRHEPAIFLAALLNSQPMGFYPPAQLV 669

Query: 807 QDARQFNIQIMPPSVNTPCVDFKVG----------DNRIYYSLAAI 842
           QDA++  + ++P        +  +              +   L+ +
Sbjct: 670 QDAKRHGVTVLPIDATKSGWEASLEAQPGAAPPDGRPAVRLGLSLV 715


>gi|313894543|ref|ZP_07828107.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            sp. oral taxon 158 str. F0412]
 gi|313440939|gb|EFR59367.1| DNA polymerase III, alpha subunit, Gram-positive type [Veillonella
            sp. oral taxon 158 str. F0412]
          Length = 1261

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 152/978 (15%), Positives = 318/978 (32%), Gaps = 200/978 (20%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  S  +  +S+ ++   I     PA+AITD   + +  E        G++ I 
Sbjct: 335  VELHLHTKMSDKDALVSVKDLFKTIKKWGHPAVAITDHGVVQAFPEAQALGKELGVKVIY 394

Query: 72   GCQLD------IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            G +        +   +   +  + K        I+LL     G + L +++S  +L +  
Sbjct: 395  GVEGYLIEDEIVARDEEPVVDKKKKKEKDKRYHIILLAKNMVGLRNLYKMISISHL-EHY 453

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-QVAEKRLLTFKKLFGDRLYV 184
            K   R+  S ++E   EG+I+ +   +G + ++    ++ +   +    +        Y+
Sbjct: 454  KVRPRLPRSVIEE-HREGIIIGSACEAGELMQSIVRGATKEELLEVASFYD-------YL 505

Query: 185  NLQRH----------RGYDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
             +Q H             D          V++L      P+ AT +  +L+ E+    ++
Sbjct: 506  EVQPHTNNMFLVRKGLMPDEQALIDMNKTVIELGEALNKPVCATCDVHYLTPEEKIYREI 565

Query: 231  LM--AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            ++                R T +                  A E  V   R  +  ++  
Sbjct: 566  MLTACGYPDADEQPDLHLRTTDEMLASFPYLSEEK------AYEIVVTNTRAINDSIEDI 619

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             P+       + +      +           +              +  ++RLD+EL+ I
Sbjct: 620  KPVPDGTYSPKIEG----ADEAFTEMCYRNAKAIYGDPL------PRVVQERLDYELDCI 669

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                +   + I    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 670  ISNGYGVLYYIAHKLVKKSLDDGYLVG-SRGSVGSSFAATMSEITEVNPLPPHYVCPNCK 728

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + F  FL  +   +PD D++F  D +
Sbjct: 729  HSEFFEKGEYAGGFDLPRKDCPECGHALQTNGHDIPFAIFLGFEGDKVPDIDLNFSGDYQ 788

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
             +  +Y +  +G + V +  T G++  K A   V +                        
Sbjct: 789  AKAHKYTEELFGRDNVFKAGTIGTIADKTAFGYVKKY----------------------- 825

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPM 545
                        E R           +++    +      H  GI++  R +      P+
Sbjct: 826  -----------AEVRDIQARSGFFEHLAKGFTNVKNTTGQHPGGIMVCPRDMDVHHFTPI 874

Query: 546  YRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                    S +  T F+   IE   + K D LG    T+++     + +    +D   IP
Sbjct: 875  QHPANKKESGVLTTHFDYHSIE-GRMTKLDILGHDDPTIIR-----MLEDLTGIDAKTIP 928

Query: 603  FDDHETYHLLTTKGTLG---------------IFQLESSGMRQALEGMQPDCIEDIIALV 647
            FDD  T  L ++   +G               + +  +  +R  LE  +P    D++ + 
Sbjct: 929  FDDPRTLSLFSSTEGIGLTPEQLQGDQVASLAVPECGTKFVRGMLEDSRPQTFSDLVRIS 988

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
                 G    +    +       I +    ++  +     V+ +    +    +   +S 
Sbjct: 989  GFSH-GTNVWLDNAQDL------IKNGTCKLNEAISTRDDVMNF----LIHRGMDRKHSF 1037

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
               + +R+  G + + +  +    F +   +N I +    +  ++      Y F ++HA 
Sbjct: 1038 FVMENVRKGKGIEKRNKQGQATTEFEAEMRENNIPEWFIESCKKI-----SYLFPRAHAV 1092

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------- 804
            AY +++++ AW K ++P+ F AA  ++     +                           
Sbjct: 1093 AYVMMAFRIAWFKVYHPLAFYAAYFSIRAKAFDLRIMTGDLKTQMTEFNRIKALDRAASP 1152

Query: 805  ----------FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHI 853
                         +  Q   + +   +       F + D  +     AI  +G T A  I
Sbjct: 1153 KDKDLMSALEVSMEMYQRGYRFVNVDIQHSEARRFSIKDGALLPPFLAIDSLGETVADAI 1212

Query: 854  MEASADKPFDSLEDFCSR 871
            +    ++PF SL+D   R
Sbjct: 1213 VAEREERPFTSLKDLQRR 1230


>gi|163783832|ref|ZP_02178813.1| DNA polymerase III alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880903|gb|EDP74426.1| DNA polymerase III alpha subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 432

 Score =  287 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 108/343 (31%), Positives = 189/343 (55%), Gaps = 7/343 (2%)

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M +A +LSG++++EAD LR+A+GKK  + M K K+RFI+GA + G SK     +++ + K
Sbjct: 1    MFMANILSGFTMAEADTLRKAIGKKKADVMAKMKDRFINGAVEKGFSKEKISQLWDDIEK 60

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y FNKSH+ AYA ++Y TA++KT+YP EF A  +T E ++ +K      D + F I+
Sbjct: 61   FASYSFNKSHSTAYAYLTYWTAYIKTYYPEEFFAVKLTTEKND-DKFLNILNDMKDFGIE 119

Query: 816  IMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873
            ++PP +N    +F + +  +I + LA IK VG ++A+ I+E    +  +  + D   R+D
Sbjct: 120  LLPPHINKSLSEFAIEEKGKIRFGLARIKNVGESSAKAIVEERIKNGEYHDIFDIAERLD 179

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH---E 930
            SK +N+RVLE+L+ AGA D     R  +L ++D      Q   +++ +   ++       
Sbjct: 180  SKNMNKRVLEALIKAGAFDFTEVDRGVMLHNIDKALTSGQKQRQSKLSGQNSLLGLMMKP 239

Query: 931  KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATI 990
            + T +  ++           + + E+ VLGFY SGHPL  Y+  L+   +      +   
Sbjct: 240  EETKTAVLSYNDAPHLTEREKLDYEKEVLGFYISGHPLKAYQKELKG-RVLPIASLITRK 298

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + +++A ++ + ++KKTR G+ +      +     +   FP
Sbjct: 299  SRDRVKVAGVISNVKKKKTRSGNTMAVFQLQDETGIMDVRAFP 341


>gi|255523409|ref|ZP_05390378.1| PHP domain protein [Clostridium carboxidivorans P7]
 gi|255512867|gb|EET89138.1| PHP domain protein [Clostridium carboxidivorans P7]
          Length = 232

 Score =  287 bits (733), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 116/235 (49%), Gaps = 6/235 (2%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           EK+  +V L  H+ YSLL+ +  +  ++ K       +IAITD   ++  ++F ++A   
Sbjct: 3   EKTYDWVSLHQHTGYSLLDSSAKIPELISKAKELGMKSIAITDHGVMYGCVDFYKEAKEQ 62

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
           GI+PIIGC++ +  +      N  +        +VLLV    GY+ L+++VS+   ++  
Sbjct: 63  GIKPIIGCEVYVAGKSMHIKQNDKEN---ENYHLVLLVKNETGYKNLMKIVSKAS-VEGF 118

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
               R    +L++  +EGLI L+    G I       +   A++  L +K +F D  Y+ 
Sbjct: 119 YYKPRTDHDYLKK-HSEGLISLSACLGGEIQSYILKGNLSKAKEIALLYKDIFKDGFYLE 177

Query: 186 LQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           LQ H   ++     ++++++   ++PLVATN+  ++ ++  +      A     +
Sbjct: 178 LQYHGMEEQEKVNEELIKMSKELDIPLVATNDVHYIKKKIIKLMMFCCASRQEKL 232


>gi|237800159|ref|ZP_04588620.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. oryzae
            str. 1_6]
 gi|331023016|gb|EGI03073.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. oryzae
            str. 1_6]
          Length = 451

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 110/325 (33%), Positives = 173/325 (53%), Gaps = 20/325 (6%)

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
             KQ+  FI G   N I   +A NIF+L+ KFA YGFNKSH+AAY ++SYQTAW+KTHYP 
Sbjct: 1    AKQRGGFIDGCKTNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHYPA 60

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV-GDNRIYYSLAAIKG 844
             F+AA ++ +M N +K+    ++ R   +++  P VNT    F V  D RI Y L AIKG
Sbjct: 61   PFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTVSDDGRILYGLGAIKG 120

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY-------- 896
            VG      I +A  + PF  L DFC+RVD K++N+R L+ L+ +GALD  G         
Sbjct: 121  VGEGPVEAITDARQNGPFKDLFDFCARVDLKRVNKRTLDGLIRSGALDRLGPYFELEPKA 180

Query: 897  -------SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--KGTFSDKITLEKFSVEN 947
                   +R  LL +L+   + A+   ++R + H ++F     +       +  K    +
Sbjct: 181  YQANIDRNRSVLLAALEEAIQAAEQTARSRDSGHSDLFGGLFVEADADVYASHRKTRESS 240

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
               R   E+  LG Y +GHP+D Y+  +R+   +   +           +A ++++ +  
Sbjct: 241  LKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQ--TVAGLIIALRVM 298

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
            K +KG ++G++T  + +   EA+ F
Sbjct: 299  KNKKGDKMGFITLDDRSARIEASLF 323


>gi|188586065|ref|YP_001917610.1| DNA polymerase III, alpha subunit [Natranaerobius thermophilus
            JW/NM-WN-LF]
 gi|179350752|gb|ACB85022.1| DNA polymerase III, alpha subunit [Natranaerobius thermophilus
            JW/NM-WN-LF]
          Length = 1210

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 170/986 (17%), Positives = 323/986 (32%), Gaps = 197/986 (19%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            + L  H+  S L+   S   +++  A     AIAITD   + S  E  + A   GI+ + 
Sbjct: 310  IELHAHTRMSTLDATCSATELVETAADWGHKAIAITDHGVVQSFPEAFEAAQEKGIKVLY 369

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +   ++            T    +++    +G Q L  L+S  +L     +  RI
Sbjct: 370  GVECYLVEDED--------NYKDTSYHCIVIAKNKQGLQDLYRLISESHLY-YFYRFPRI 420

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                L E+  E L++ +    G + +A     S    + +  +        Y+ +Q    
Sbjct: 421  PKKRLSEV-RENLLIGSACERGEVIQALLNGKSSAELEEIAGYYD------YLEIQPAGN 473

Query: 192  YD----------RYRESQVV----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +          +     ++    +LA   + P  AT++  FL   D     +LMA    
Sbjct: 474  NEFLIRKGVYESQEDLHNLIKEVVKLARKIDKPFCATSDVHFLHPWDKNYRKILMAGQGF 533

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
              +SQ      T D  L     +     D  +A+    +  +     L      L     
Sbjct: 534  DDLSQPPLYMKTTDEMLTEFDFLGE--EDAYKAVIECPDQIQNQVDELVPVPQDLYTPHI 591

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +D Q  E    + K + G                +  + RL+ EL  I    ++  +
Sbjct: 592  PGAED-QITEMAYSKAKQLYG------------EPLPEIVKTRLEEELKSIVDQGYAVIY 638

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    ++ + ++   VG  RGS   S+ A    IT+++PL                   
Sbjct: 639  LISHKLVKKSLEDGYLVG-SRGSVGSSLVATMCDITEVNPLPPHYMCPNCQHSEFIQDGS 697

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                   + + F  F+      +PD D++F  + +     Y + 
Sbjct: 698  VGSGVDLRDKNCPHCNTDMNKDGYDIPFAVFMGFHGEKVPDIDLNFSGEYQPIAHEYTEE 757

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G E V +  T G++  K A   V               K   ND              
Sbjct: 758  LFGKEHVFKAGTIGTIAEKTAFGFV---------------KGYVNDNGI----------- 791

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRSDLP 554
                    +     +  +     G+ R    H  G++I      + +  P+ R       
Sbjct: 792  --------NCRQSEVNRLVSGCTGVKRTTGQHPGGLMIVPEGHDIHEFCPIQRPADDTKT 843

Query: 555  --VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---- 608
              +T           L+K D LG    T++           +K+ L         +    
Sbjct: 844  EVMTTHFDYNAISDRLLKLDILGHDVPTIIYMLESITGLDPLKIRLDDPDTIKIFSSPEP 903

Query: 609  -----YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
                   +    GTLGI +  +  +RQ LE  +P    ++I +  L              
Sbjct: 904  LGVGPEDIDCQVGTLGIPEFGTRFVRQMLEDTKPQTFSELIRISGLSHG-------TDVW 956

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
              N ++ I      +  ++     +++Y         +  G    +A  +   + K    
Sbjct: 957  LNNAQDIIAEGIAELGDVISTRDDIMVYL--------MYKGVDKKDAFTIMEKVRKGKGL 1008

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
              +       +   + G+      +  ++      Y F K+HA AY ++S++ A+ K  Y
Sbjct: 1009 SDE-----LKNTMKEAGVPDWYLDSCLKI-----KYLFPKAHAVAYTMMSFRIAYYKVFY 1058

Query: 784  PVEFLAASMTLEMDNVEKIKKFC---------------------------------QDAR 810
            P  F A   +++ ++                                         ++  
Sbjct: 1059 PEAFYATFFSVKTEDFNSNMIVKGLDAVDEQIKYVEERGVSATPKEKSELVVLEVAREMF 1118

Query: 811  QFNIQIMPPSVNTPCVD-FKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
            Q  +Q++P S+     + F+V  D  +   L  I G+G++ A+ I++A  ++ F S ED 
Sbjct: 1119 QRGVQVLPVSIYESDSEKFQVTQDGYLRPPLITIPGLGSSVAKQIVKAREEREFSSKEDL 1178

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCF 894
              R     +++ V+E L   G L   
Sbjct: 1179 RKR---GGVSKSVIEPLEEHGCLKDL 1201


>gi|238927510|ref|ZP_04659270.1| DNA polymerase III, alpha subunit [Selenomonas flueggei ATCC 43531]
 gi|238884792|gb|EEQ48430.1| DNA polymerase III, alpha subunit [Selenomonas flueggei ATCC 43531]
          Length = 1255

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 170/1011 (16%), Positives = 313/1011 (30%), Gaps = 214/1011 (21%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC---AAG-- 66
            V L  H+  S L+  +    +++  A    PA+AITD   + +  E    A      G  
Sbjct: 340  VELHAHTKMSALDAVVPPKVLVETAARWGWPAVAITDHGVVQAFPEAMNTARALAKKGID 399

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL---- 122
            I+ I G +  +   ++                I+ L     G   L +LVS  ++     
Sbjct: 400  IKIIYGMEGYLVDGED----------DARAFHIIFLAKNKTGLYNLYKLVSLSHIRYFRG 449

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
             + +   R+  + LQ+   EG+I+ +   +G + R           + +  F        
Sbjct: 450  TKKRGRPRVPRAVLQQ-HREGIIVGSACEAGELIRGIVAGRPNAELEEMAQFYD------ 502

Query: 183  YVNLQRHRGYD----------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            ++ +Q     D                R    +V +LA     PL+AT +  FL+ ED  
Sbjct: 503  FLEIQPIHNNDFLKFDDRFPMQTDEDLRDINRKVDELARKLGKPLIATCDVHFLNPEDA- 561

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
             +  ++  A+    +++  P                      E +          +    
Sbjct: 562  VYRAMIQKANGYRDAERQPPLYLRTTEEMLAEFDYLGAERAYECVVTNPRRIAEETERFL 621

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
                 L   +     D + +E +  R + + G                +    RL+ EL 
Sbjct: 622  PIPDELYAPMVP-GADREIQEMSYARARKLYG------------ENLPKIVSDRLELELK 668

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------- 399
             I R  F+  ++I    ++ +  +   VG  RGS   S  A  + +T+++PL        
Sbjct: 669  PILRHGFAALYIIAQRLVKKSNDDGYLVG-SRGSVGSSFVATMIGVTEVNPLPPHYRCPH 727

Query: 400  ----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQD 425
                                               ++ F  FL  D   +PD D++F  D
Sbjct: 728  CQYNRFIDDGSVGSGFDLPSEDCPVCGTPLIKDGHNIPFAVFLGFDGDKVPDIDLNFSGD 787

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +    +Y +  +G   V +  T   LQ K A         M Y +     K  P     
Sbjct: 788  YQPVAHKYTEVLFGKMNVFRAGTIAGLQDKNAYG-----YAMHYYEDQGAAKGRP----- 837

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLV 543
                                     +  + +   G+      HA GI  V  D  +    
Sbjct: 838  ------------------------YIEHMMRGCMGVKATTGQHAGGIMVVPRDMDVHYFT 873

Query: 544  PMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+ R      SD   T F+   I +  L+K D LG    T+++   +   +    +    
Sbjct: 874  PIQRPANNMESDTLTTHFDYHSISE-RLVKLDILGHDDPTVIKMLEELTHRDPETIPFDD 932

Query: 601  IPFDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                   T           L    GT GI +  +S  ++ ++   PDC  D++ +     
Sbjct: 933  PATMSIFTSTDALGITPEDLGANMGTYGIPEFRTSFTQKMIDDSNPDCFADLVRISGFSH 992

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
             G    +    +              +      T    I     +    + +G     + 
Sbjct: 993  -GTNVWLGNAQD--------------LIKAGTSTLKDAISARDDIMNYLMQNGIDPLLSF 1037

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
                 + K      D             GI +    +  ++      Y F ++HA AY +
Sbjct: 1038 KTMENVRKGRGIAPDVV-----EKLRAGGIPEWYIESCQKI-----KYLFPRAHATAYVM 1087

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVE------------------------------- 800
            + Y+ A+ K HYP+ + AA  ++     +                               
Sbjct: 1088 MGYRIAFCKVHYPLAYYAAYFSIRAAEFDANIISKGKDAVRAAIDTLLAEAREHRGKLDN 1147

Query: 801  ------KIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHI 853
                   + +   +         P  +     + F + +  +     AI G+G   A+ I
Sbjct: 1148 KKQDTLIVLQLAWEMYLRGFSCEPVDLYASDAEKFILHETSLLPPFTAIPGMGQKAAQAI 1207

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC-FGYSRMQLLQ 903
            +EA  D  F S+ED  +R          +E L   G LD     ++++L  
Sbjct: 1208 VEARRDGRFISVEDLATRAHVAA---PAIEVLRTHGCLDGMMESNQVELFA 1255


>gi|330838937|ref|YP_004413517.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185]
 gi|329746701|gb|AEC00058.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185]
          Length = 1254

 Score =  284 bits (727), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 164/990 (16%), Positives = 313/990 (31%), Gaps = 198/990 (20%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L  H+  S ++  +S   ++   A+   PAIAITD   + +  + ++ A    I+ I 
Sbjct: 352  VELHAHTRMSNMDAVVSAETLIKTAASWGWPAIAITDHGVVQAFPDAAKAASKLDIKVIY 411

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +  +D  +              I+ L     G + L ++VS  +L     +  R+
Sbjct: 412  GMEGYLVQEDFEQKHAN---------HIIFLAKNLNGLRNLYQMVSLSHLK-YLHRQPRL 461

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                ++E   E +I+ +   +G + RA      +     + +F        Y+ +Q    
Sbjct: 462  PKHIIEEY-REDVIIGSACEAGELIRAIVAQKPEEELLEIASFYD------YLEIQPIGN 514

Query: 192  YD-----------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
             +                 R    +V +LA      L+AT +  FL+ ED        A+
Sbjct: 515  NEFLVRSDKFPHIKDDEDLRRINLKVAELAKKLGKMLIATCDVHFLNPEDAIYR----AI 570

Query: 235  AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                   +    +                +     A E  V   R+ S +++   PI   
Sbjct: 571  LMKGKGFEDAELQPPLFLRTTEEMLAEFDYLGEEAAYEAVVTNPRKVSDMIEKFKPIPDE 630

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                           E+R+ +         +         +    RL  EL  I    FS
Sbjct: 631  LYSPMIPG----AAEEIRDMSYRKARSLYGENL------PEVVEARLKQELTPIIGHGFS 680

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------- 399
              +LI    ++ +  +   VG  RGS   S  A    IT+++PL                
Sbjct: 681  VLYLIAQRLVKKSNDDGYLVG-SRGSVGSSFVATMTDITEVNPLPPHWRCPHCKFSEFVE 739

Query: 400  --------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
                                        + F  FL  D   +PD D++F  + +    +Y
Sbjct: 740  DGSVGCGYDLPSRKCPVCGTELLKDGHDIPFAVFLGFDGDKVPDIDLNFSGEYQPVAHKY 799

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
             +  +G + V +  T  ++  K A   V +                              
Sbjct: 800  TEELFGKDNVYRAGTIATVADKTAFGYVKK------------------------------ 829

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS 551
                F E +        +  ++    G+ R    H AGI  V  +  +    P+ R    
Sbjct: 830  ----FFEEKGVKKHNAYIASLAAGCMGVKRTTGQHPAGIMVVPRNMDVHFFTPIQRPADD 885

Query: 552  DLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET- 608
                 +T         + L+K D LG    T+++   D   +    +           + 
Sbjct: 886  KNTTTITTHFDYHSISSRLVKLDILGHDDPTVIKMLEDLTHRDPKTIPFDDPATLSIFSS 945

Query: 609  --------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
                      L    GT GI +  +   RQ ++   P C  D++ +              
Sbjct: 946  TKALGLDPKELGANSGTFGIPEFRTGFTRQMIDDTHPSCFSDLVRISGFSHG-------T 998

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
                 N ++ I S    +   +     +++Y         + SG     +     ++ K 
Sbjct: 999  DVWLGNAQDLIRSGQCTLREAISARDDIMMYL--------IHSGIDPLLSFQTMESVRKG 1050

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
               +             + GI +       ++      Y F ++HA AY +++++ A+ K
Sbjct: 1051 KGIKEATV-----KILREGGIPEWYIEACQKI-----KYMFPRAHATAYVMMAWRIAYCK 1100

Query: 781  THYPVEFLAASMTLEMDNVE--------------------------------KIKKFCQD 808
             HYP+ F AA  ++     +                                 + +   +
Sbjct: 1101 VHYPLAFYAAYFSIRAAEFDADVVARGKDYVKKQLDALEAKEAPDIKEKATIIVLQLAWE 1160

Query: 809  ARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
                   +    +     + F + +  +   LA++ GVG + AR I+EA  D  F S+ED
Sbjct: 1161 MYLRGFFMERVDIYASEAERFVLHEKSLLPPLASLGGVGASAARSIVEARKDGLFTSIED 1220

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
               R     +++  +++L   G L     S
Sbjct: 1221 IKKRT---GVSKTCIDALQAHGCLADMDAS 1247


>gi|260887309|ref|ZP_05898572.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185]
 gi|260862945|gb|EEX77445.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC 35185]
          Length = 1255

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 164/990 (16%), Positives = 313/990 (31%), Gaps = 198/990 (20%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L  H+  S ++  +S   ++   A+   PAIAITD   + +  + ++ A    I+ I 
Sbjct: 353  VELHAHTRMSNMDAVVSAETLIKTAASWGWPAIAITDHGVVQAFPDAAKAASKLDIKVIY 412

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +  +D  +              I+ L     G + L ++VS  +L     +  R+
Sbjct: 413  GMEGYLVQEDFEQKHAN---------HIIFLAKNLNGLRNLYQMVSLSHLK-YLHRQPRL 462

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                ++E   E +I+ +   +G + RA      +     + +F        Y+ +Q    
Sbjct: 463  PKHIIEEY-REDVIIGSACEAGELIRAIVAQKPEEELLEIASFYD------YLEIQPIGN 515

Query: 192  YD-----------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
             +                 R    +V +LA      L+AT +  FL+ ED        A+
Sbjct: 516  NEFLVRSDKFPHIKDDEDLRRINLKVAELAKKLGKMLIATCDVHFLNPEDAIYR----AI 571

Query: 235  AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                   +    +                +     A E  V   R+ S +++   PI   
Sbjct: 572  LMKGKGFEDAELQPPLFLRTTEEMLAEFDYLGEEAAYEAVVTNPRKVSDMIEKFKPIPDE 631

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                           E+R+ +         +         +    RL  EL  I    FS
Sbjct: 632  LYSPMIPG----AAEEIRDMSYRKARSLYGENL------PEVVEARLKQELTPIIGHGFS 681

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------- 399
              +LI    ++ +  +   VG  RGS   S  A    IT+++PL                
Sbjct: 682  VLYLIAQRLVKKSNDDGYLVG-SRGSVGSSFVATMTDITEVNPLPPHWRCPHCKFSEFVE 740

Query: 400  --------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
                                        + F  FL  D   +PD D++F  + +    +Y
Sbjct: 741  DGSVGCGYDLPSRKCPVCGTELLKDGHDIPFAVFLGFDGDKVPDIDLNFSGEYQPVAHKY 800

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
             +  +G + V +  T  ++  K A   V +                              
Sbjct: 801  TEELFGKDNVYRAGTIATVADKTAFGYVKK------------------------------ 830

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS 551
                F E +        +  ++    G+ R    H AGI  V  +  +    P+ R    
Sbjct: 831  ----FFEEKGVKKHNAYIASLAAGCMGVKRTTGQHPAGIMVVPRNMDVHFFTPIQRPADD 886

Query: 552  DLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET- 608
                 +T         + L+K D LG    T+++   D   +    +           + 
Sbjct: 887  KNTTTITTHFDYHSISSRLVKLDILGHDDPTVIKMLEDLTHRDPKTIPFDDPATLSIFSS 946

Query: 609  --------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
                      L    GT GI +  +   RQ ++   P C  D++ +              
Sbjct: 947  TKALGLDPKELGANSGTFGIPEFRTGFTRQMIDDTHPSCFSDLVRISGFSHG-------T 999

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
                 N ++ I S    +   +     +++Y         + SG     +     ++ K 
Sbjct: 1000 DVWLGNAQDLIRSGQCTLREAISARDDIMMYL--------IHSGIDPLLSFQTMESVRKG 1051

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
               +             + GI +       ++      Y F ++HA AY +++++ A+ K
Sbjct: 1052 KGIKEATV-----KILREGGIPEWYIEACQKI-----KYMFPRAHATAYVMMAWRIAYCK 1101

Query: 781  THYPVEFLAASMTLEMDNVE--------------------------------KIKKFCQD 808
             HYP+ F AA  ++     +                                 + +   +
Sbjct: 1102 VHYPLAFYAAYFSIRAAEFDADVVARGKDYVKKQLDALEAKEAPDIKEKATIIVLQLAWE 1161

Query: 809  ARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
                   +    +     + F + +  +   LA++ GVG + AR I+EA  D  F S+ED
Sbjct: 1162 MYLRGFFMERVDIYASEAERFVLHEKSLLPPLASLGGVGASAARSIVEARKDGLFTSIED 1221

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
               R     +++  +++L   G L     S
Sbjct: 1222 IKKRT---GVSKTCIDALQAHGCLADMDAS 1248


>gi|162450012|ref|YP_001612379.1| DNA polymerase III, alpha subunit [Sorangium cellulosum 'So ce 56']
 gi|161160594|emb|CAN91899.1| DNA polymerase III, alpha subunit [Sorangium cellulosum 'So ce 56']
          Length = 1108

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 154/582 (26%), Positives = 249/582 (42%), Gaps = 32/582 (5%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV L   S +S LEGA     ++ +        +A+ D + ++ ++     A     + I
Sbjct: 9   FVELCGRSCFSFLEGASHPEELVHRAKELGLEGLALCDRDGIYGSVRAHTAAKKVEQRVI 68

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +G +L +            +      PS+VLLV  +EGY  L  L++  +   +   +  
Sbjct: 69  VGAELTLGAPRG-----GAERAPEVRPSVVLLVEDSEGYANLCRLLTIAHAECEKGMASI 123

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH- 189
              +        GL  +      P+D         V+   L T +  FG+R  V   +H 
Sbjct: 124 SAEA--IAAAQRGLSAIV-----PLDPLVPAG---VSGALLGTLRDAFGERALVATWKHL 173

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRV 248
              D  R +  +     H   +VAT   L+         DVL  +   T + Q   R   
Sbjct: 174 DRRDGERVAAALAAERRHGPCVVATARPLYHHPSRKPLADVLACIRTKTTLDQAGTRIAP 233

Query: 249 TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
             + Y+++ ++M ++F D P  +  TVE+A RC F L       P           +  +
Sbjct: 234 NAEAYVRSGAQMAALFRDHPAWVARTVEVASRCRFSLSELRYSFPSDALCMP---GETSD 290

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
             LR     G   R  +GA          R +++ EL +IA++  + YFL V   ++ A+
Sbjct: 291 QALRRLTEEGCRDRYPEGA------PPPVRAQIEKELALIAKLGVAPYFLSVQQVVKIAR 344

Query: 369 KNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
              I    GRGS A S   + L +T +DP R SLLFERFL+ +R   PD D+DF  +RR+
Sbjct: 345 ARQIL-CQGRGSAANSAVCFVLGVTAVDPARSSLLFERFLSEERHEPPDIDVDFEHERRE 403

Query: 429 EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
           EVI+ +   YG +R A +    + + K+ALR+VG+A      QVDRL  L+ +  A    
Sbjct: 404 EVIQAIYEMYGRDRAAMVSEVIAYRGKSALREVGKAFGFSADQVDRLSGLVHHHEADITE 463

Query: 489 LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRD 548
            +              D  V + + ++  LEG  RH S H  G V+   PL ++ P+   
Sbjct: 464 QRVSE-----AGLDPDDVRVRQAVMMASALEGFPRHLSIHVGGFVLSSEPLHKVAPVEPA 518

Query: 549 VRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 V  ++   ++  G  K D L L  LT ++K+L  + 
Sbjct: 519 RMEGRTVIPWDKDDLDDLGFFKIDVLALGMLTAIRKALGLIH 560



 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 121/448 (27%), Positives = 206/448 (45%), Gaps = 35/448 (7%)

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L+ IP +D   Y  +    T+G+FQ+ES      L  ++P+   D++  V++ RPGPI  
Sbjct: 625  LAQIPPEDPAVYEAIGRADTVGVFQIESRAQMAMLPRLKPNKFYDLVIEVAIVRPGPIQG 684

Query: 658  IVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
             +V+    R+ G+E  VS HP +DP+L+ T GV ++QEQVMQIA + +GY+  EAD LRR
Sbjct: 685  GMVHPYLRRRTGQEPPVSPHPCLDPILERTLGVPLFQEQVMQIAMVGAGYTPGEADQLRR 744

Query: 716  AMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
             M    K    ++ + R I G ++ GIS      +++ +  F +YGF +SHAA++A++ Y
Sbjct: 745  DMAAWKKHGRLERHRGRLIQGFAEQGISAKFGEMLYQQIQGFGEYGFPESHAASFALLVY 804

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG--- 831
             +AW+K H+   F  A +  +           QDA++  +++ P  V     D  +    
Sbjct: 805  ASAWLKVHHQAAFTCALLNAQPMGFYSPSALVQDAQRHGVEVRPVCVVQSAWDATLEPSA 864

Query: 832  ----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
                   +   +  +KG+G      I+ A  + PF SL D   R + K   +  +E+L  
Sbjct: 865  EPSAGPALRLGMRLVKGLGEAAVAAIVAAREEAPFASLPDLVRRTELK---KNEVEALAE 921

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGAL     +R + L              + R  + E +F          + L       
Sbjct: 922  AGALAALVPARREALW-------------RARAPRVEGLFEGVPIEQDRDVGLPPLRP-- 966

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKM----GIKGYEESVATIRGNNIRLAAMVVS 1003
               +   +   +G     HP+   +  L++      ++  EE  A   G ++R+A MVV 
Sbjct: 967  -LEQLALDYGRVGLSLHDHPMRHVRRALKRRRGAGRVRTAEEIKAARDGESVRVAGMVVG 1025

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +Q+  T  G  + ++T  +         
Sbjct: 1026 RQRPATASG--VTFMTLEDETGVVNVIV 1051


>gi|330859614|emb|CBX69954.1| hypothetical protein YEW_DO15370 [Yersinia enterocolitica W22703]
          Length = 234

 Score =  283 bits (725), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 75/244 (30%), Positives = 120/244 (49%), Gaps = 13/244 (5%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + + P FVHL+VHS YS+++G   +  ++ + AA   PA+AITD  NL   ++F   A +
Sbjct: 1   MAE-PRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCGLVKFYGSAHS 59

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           AG++PIIG    +          Q +     +  + +L    +GYQ L  L+S  Y    
Sbjct: 60  AGVKPIIGADFYV----------QSEILGDELAHLTVLARNNKGYQNLTLLISEAYQRGY 109

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
           G     I   WL +   EGLI+L+GG  G + +     +    E+ L  +++ F D  Y+
Sbjct: 110 GAAGPIIDRDWLIK-HKEGLILLSGGRMGDVGKFILRGNHAQVEQCLEFYQEHFPDSYYL 168

Query: 185 NLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            L R    D        V LA    LP+VATN+  F+ E D++AH++ +A+     +   
Sbjct: 169 ELIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDP 228

Query: 244 DRPR 247
            RP+
Sbjct: 229 KRPK 232


>gi|148530008|gb|ABQ82210.1| DNA polymerase III alpha chain [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 353

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 146/368 (39%), Positives = 199/368 (54%), Gaps = 16/368 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +  +  FVHL+VHS+YSL +GA+ +  I       + PA+AITDT NLF ALEFSQ    
Sbjct: 1   MPHA-DFVHLRVHSAYSLSQGAIRIPEIASLAQDMRMPAVAITDTGNLFGALEFSQYCSG 59

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+QPIIGCQ+         +  +   P      +VLL     G   L  L S+ +L   
Sbjct: 60  KGVQPIIGCQV--------GLPPRNDKPGAPAEPVVLLAQDETGLMNLQYLSSQGFLTGD 111

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 + L  L E   EGLI+LTGG+ GP+ R           + L      FG+RL V
Sbjct: 112 T-AEPTVTLDVLCER-AEGLILLTGGTRGPLFRMLADGQQDEVAQWLERLHAAFGERLAV 169

Query: 185 NLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            L RH     +  +  ++ LA    LPLVATN   F   E YEAHD L+ +A    ++++
Sbjct: 170 ELHRHGLPVQKAVKPGMIALADRMGLPLVATNECFFPRPEMYEAHDALLCIAQGRTMAER 229

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
           DR RVTP+H+ K  + M  +F+DLPEA + T+ IARRC+  ++   P+LP   + +    
Sbjct: 230 DRWRVTPEHWFKPPAMMRDLFADLPEACDYTLAIARRCAVRVETRKPLLPVCPKVQP--- 286

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
              EE  LR  A  GL  RLA+  +      Q YR RL FEL++IA+M F GYF+IVADF
Sbjct: 287 GATEEQTLRAMAEDGLARRLARMDMD-DATRQVYRDRLTFELDIIAKMGFPGYFMIVADF 345

Query: 364 IQWAKKNN 371
           IQWAK ++
Sbjct: 346 IQWAKAHD 353


>gi|182418219|ref|ZP_02949519.1| DNA polymerase III subunit alpha [Clostridium butyricum 5521]
 gi|237666115|ref|ZP_04526102.1| DNA polymerase III subunit alpha [Clostridium butyricum E4 str. BoNT
            E BL5262]
 gi|182378037|gb|EDT75577.1| DNA polymerase III subunit alpha [Clostridium butyricum 5521]
 gi|237658205|gb|EEP55758.1| DNA polymerase III subunit alpha [Clostridium butyricum E4 str. BoNT
            E BL5262]
          Length = 496

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 108/374 (28%), Positives = 180/374 (48%), Gaps = 36/374 (9%)

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG-----------ASKNGISKT 744
            M+I + L+GYS+  +D++RRAM KK  + M+++++ FI G             +NGIS+ 
Sbjct: 1    MEIVRKLAGYSMGRSDMVRRAMSKKKHKVMEEERKNFIHGIIENDEVVVPGCIRNGISEN 60

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            +A  IF+ +  FA Y FNKSHAAAYAV+ YQTA++  +YPVE +AA +   M   EK+  
Sbjct: 61   VANKIFDNMMDFASYAFNKSHAAAYAVVGYQTAYLMRYYPVEMIAAMLNSIMGTSEKVAH 120

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFD 863
            +   A    IQ++PP +N     F V  + I + +AAIK VG      I++A  +   F+
Sbjct: 121  YINFAESLGIQVLPPDINESYSRFTVKGDTIRFGMAAIKNVGANVVDSIVKARENKGKFE 180

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
            SL DF +++D   +N+R +E L+ AGALD F   R ++L   + +       +K   +  
Sbjct: 181  SLVDFINKMDVSTINKRAVECLIKAGALDNFNVYRSKMLAVHEKLIDSISSDKKRNIDGQ 240

Query: 924  ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
             ++F   +   + +++       +       E+ + G Y +GHPLD Y   L+       
Sbjct: 241  ISLFGATEELKNPEVSYPNIKEFDKRNLLAMEKEMTGLYITGHPLDDYAKSLKMQTTIEI 300

Query: 984  EESVA------------------------TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             +  +                            + + L  ++ S  QK TR  + + ++T
Sbjct: 301  AKIFSVHETLDEVLEENIPDVNIFEGKNILKDNDRVVLGGILASVNQKVTRNNTIMAFLT 360

Query: 1020 FSEPAKEYEANFFP 1033
              +     E   FP
Sbjct: 361  LEDLTGSIEVIVFP 374


>gi|323142330|ref|ZP_08077162.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Phascolarctobacterium sp. YIT 12067]
 gi|322413214|gb|EFY04101.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Phascolarctobacterium sp. YIT 12067]
          Length = 1241

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 180/1002 (17%), Positives = 322/1002 (32%), Gaps = 185/1002 (18%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-SQKACAAGIQPI 70
            V L  H+  S L+G   +  ++ +       A+AITD   +  A  F    A  + ++ I
Sbjct: 302  VELHCHTKMSKLDGLTPMEGLVKQAIRWGHKALAITDHGVVQ-AFPFCFDAAEGSDLKLI 360

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTV---------PSIVLLVSTAEGYQRLIELVSRMYL 121
             G +  +      K                       I++L     G + L +LV+  +L
Sbjct: 361  FGMEGYLISDRQTKDDAVDTENPDAATKGKSKISSHHIIILAKNEIGLRNLYQLVTISHL 420

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                 +   +  + ++E   EGL++ +   +G + RA    +S    + +  F       
Sbjct: 421  R-YLNKRPLLPRAVIEE-HREGLVLGSACEAGELYRAVRLGASDEELEEIAGFYD----- 473

Query: 182  LYVNLQRHRGYD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
             Y+ +Q                   R    ++ +L        VAT +  FL+ ED +  
Sbjct: 474  -YLEIQPTGNNQFLVRENYCTEEDLREHNRKIYELGKRLGKLTVATCDVHFLNPEDAQLR 532

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L A         +      P  YL    EM+  FS L E     V +         + 
Sbjct: 533  AILQAGQGYKDADLQ------PPLYLHTTEEMLEEFSYLGEEAAYEVVVTNTNKIADMIE 586

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                    ++         E+ +R+ + A       +         Q    RL  EL+ I
Sbjct: 587  RIKPVPDRDQLYSPSIPGAEDAVRDLSYAKAHEWYGE------KLPQIVEDRLKMELDAI 640

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                FS  + I    ++ +      VG  RGS   S  A  L IT+++ L+         
Sbjct: 641  IGHGFSVLYYIAHKLVKHSIDRGYLVG-SRGSVGSSFVATMLDITEVNALKPHYRCPNCR 699

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFC---- 423
                                             ++ F  FL      +PD D++F     
Sbjct: 700  HSEFFMNNEVDSGFDLPPKDCPECGTRMLRDGHNIPFAVFLGFHGDKVPDIDLNFSGGID 759

Query: 424  ------QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
                     +    +Y +  +G + V +  T  ++  K A+  + +  +           
Sbjct: 760  PDDPSAMSDQSVAHKYTEELFGRDNVCRAGTIATIANKTAIGFIRKYYES---------- 809

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIG 535
                                    +        +  + +   G+ R    H  GI  V  
Sbjct: 810  ------------------------KNLHVHPAHVAALVEGFAGIKRTTGQHPGGIMVVPR 845

Query: 536  DRPLSQLVPMYRDVR--SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR- 592
            +  +  + PM R         +T           L+K D LG     +L+    +L +  
Sbjct: 846  NMDIHYITPMNRPADDKDGTTITTHYDYHSINDRLVKLDILGHDDPMVLKMLEKYLQEDV 905

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLY 650
                D   IP  D ET  +     +LG+   Q++S+     +       +  +I   S  
Sbjct: 906  DPNFDPKKIPVGDEETMRIFQDTTSLGVTPEQIDSAVGTFGIPECGTKFVRQMI---SDV 962

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            +P     +V  +   +G +  ++    +    K     I  ++ VM    +  G   S A
Sbjct: 963  QPKKFSEVVRVSGYSHGTDVWLNNAQDLIKEGKPVAETISTRDDVMTHL-ISKGVEPSLA 1021

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
                  + K  K      + + +       I +    +  ++      Y F K+HA AY 
Sbjct: 1022 FKTMEHVRKG-KAAKKGLEPKMLEAMRAVNIPEWYIKSCEKV-----QYLFPKAHAVAYV 1075

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK---------KFCQDARQFNIQIMPPSV 821
            +++Y+ A+ K HYP EF AA  T+   + +             F ++  Q   +  P   
Sbjct: 1076 LMAYRIAYCKVHYPKEFYAAYFTVRAKDFDYTHVSKGKSYVKNFIKNVYQQGFKASPLDK 1135

Query: 822  NTPCV-------------------------DFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
             T                             F V +N +   LAA+ GVG   A+ I  A
Sbjct: 1136 TTVTYLELVNEMLERGLSFDKMDLYKSDPIKFLVTENGLRPPLAALGGVGENAAKSIAAA 1195

Query: 857  SA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
               ++PF S ED   R     +N+ V+E L   G L     +
Sbjct: 1196 RDINRPFISQEDLRQR---SGVNKSVIEKLADMGVLGDLPEN 1234


>gi|285808454|gb|ADC35979.1| error-prone DNA polymerase [uncultured bacterium 148]
          Length = 1642

 Score =  280 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 141/540 (26%), Positives = 218/540 (40%), Gaps = 80/540 (14%)

Query: 5   LEKSPS--FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
           +       +  L  H+++S L+GA + + ++++        +A TD N L+ ++ F+  A
Sbjct: 1   MASRSRTPYAELHAHTNFSFLDGASAPDELVERAVELGLTGLAATDHNGLYGSVRFTTAA 60

Query: 63  CAAGIQPIIGCQLDIDM------------------------------------------- 79
             AG+  +IG ++++                                             
Sbjct: 61  EDAGLHSVIGAEIELLDPAVGDPAGTVIPPRRARRRGRAAAATADPGVELAVDDGRPTRP 120

Query: 80  ----------QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
                     +D +K   +G       P ++LL  +  G++ L  L+SR  +    K   
Sbjct: 121 RPDRARLPGHRDPVKEDFRGIGARARGPRLILLARSQIGWRSLCRLMSRANMAG-TKAVP 179

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR-LYVNLQR 188
           R   + L E   E +I L+GG SG I R         A          FGD    + L  
Sbjct: 180 RFRHALLDE-HHEDVIALSGGRSGEIGRRLLVGDRAGARAAAERLAARFGDGGFAIELGH 238

Query: 189 HR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ----- 242
           H    D +  ++   LA    LP+V TN   +   ED E HDVL A+ H   +       
Sbjct: 239 HLLPDDDWLVTESAALAADLRLPVVVTNAVHYARPEDRELHDVLTAIKHGRTLDTLADLR 298

Query: 243 ----KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
               +   +   +      +   +      E +E +V IA  CS  L       P F   
Sbjct: 299 RIDGESYLKSGDELAALGAALDGAAARAWHEGIERSVAIAASCSVDLGFEQYRFPGFPVP 358

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
           + +       + L     AG   R                 RL  EL VI R   + +FL
Sbjct: 359 DGE----TPFSYLSELCWAGARRRYHP-------LTSAVVTRLAHELGVIERAGLAEFFL 407

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           I  D + +AK   IP   GRGS AGS+  Y L I+ ++P+R  LLFERF+N  R + PD 
Sbjct: 408 ICWDLMVFAKGRGIP-AQGRGSAAGSIVTYVLGISRVEPIRHDLLFERFINEGRTTYPDV 466

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           DIDF  +RR+EVI+YV  +YG E    +    + +A++A+R+VG AL  P   VDR+ K 
Sbjct: 467 DIDFSSERREEVIQYVYERYGAEHTGMVCNLVTYRARSAVREVGYALGFPRPLVDRVAKA 526



 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 147/585 (25%), Positives = 247/585 (42%), Gaps = 64/585 (10%)

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
                 L   ++ ++G  RH S H+ G+++   PL  + P+ R    D  V QF+ + +E 
Sbjct: 998  HWERWLEFCAR-IDGFPRHLSIHSGGMLVTAAPLIDIAPIERATMVDRVVVQFDKRDVET 1056

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLE 624
              LIK D LGL  L  + ++L  +        DL  +P D  E + +L T  T+G+FQ+E
Sbjct: 1057 LKLIKLDLLGLGMLAAMDETLQLIEHDCGVCLDLDRLPEDVSEVFAMLQTADTVGVFQVE 1116

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI--VVYNNRKNGKEKIVSIHPLIDPML 682
            S    Q L   +P  ++D++  V++ RPGPI       Y  RK G E +  +HP ++P+L
Sbjct: 1117 SRAQMQTLPKSRPHNLDDLVVEVAIIRPGPIQGNAVHPYLRRKQGLEPVEYLHPSLEPVL 1176

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG--ASKNG 740
            K++ GVI+YQEQVM+IA  ++G+S +E+D  RRAMG        ++  +        + G
Sbjct: 1177 KDSMGVILYQEQVMRIAIEVAGFSPAESDGFRRAMGTWRSSREMEKLHQRFVDGAMRQPG 1236

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            ++  +A  +F  +A FA +GF KSHAAA+A  +Y+++++K  YP +FL   +  +     
Sbjct: 1237 MTIEVAEELFRQVAAFASFGFAKSHAAAFARTAYESSFLKLFYPAQFLVGLINAQPMGFY 1296

Query: 801  KIKKFCQDARQFNIQIMPPSVNTPCVDFKVG----------------------------- 831
             ++    DA++  + ++P  VN                                      
Sbjct: 1297 PVEVLVNDAKRHGVAVLPADVNGSSYKTTTEWVGRPGEPLPPGSGITERPEPVLSSACVV 1356

Query: 832  ---------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
                              +   L  +KG+G      +       P+ SL D   R D   
Sbjct: 1357 PSPEARDRWTPEVTVGWGVRLGLHLVKGIGEQHEALLDAERDRGPYRSLVDVVERTD--- 1413

Query: 877  LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT--------NKHENIFA 928
            L   VLE L+ +GA+D  G  R +LL  L  +   ++     RT         K      
Sbjct: 1414 LPEEVLERLIRSGAMDSLGRPRRELLWQLREVAGASRGRMDGRTVRGLGRAAGKRGAAAG 1473

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
                                S R  +   VLG       + +++P L ++G         
Sbjct: 1474 RPMDLRLPATDAPALPPITESERIGDAYAVLGVDARRQVVGLFRPALDRLGAVTNGALAD 1533

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               G  +R+  +VV++Q   T KG+   ++   +         +P
Sbjct: 1534 RRSG-PVRVGGLVVTRQHPMTAKGT--VFLALEDETGMVNVTMWP 1575


>gi|291533678|emb|CBL06791.1| DNA polymerase III, alpha chain, Gram-positive type [Megamonas
           hypermegale ART12/1]
          Length = 955

 Score =  278 bits (712), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 163/992 (16%), Positives = 308/992 (31%), Gaps = 204/992 (20%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++  +S   ++   A    PAIAITD   + +  E  + A    I+ I 
Sbjct: 49  VELHAHTHMSNMDAVVSAKELISTAARWGWPAIAITDHGVVQAFPEAMKAAKDNKIKVIY 108

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +  +   D  +              I++L   + G + +  +VS  +L    K   R+
Sbjct: 109 GIEGYLTGDDYQQR---------RANHIIMLAKNSIGLRNIYRMVSLSHLKYLYKSRPRL 159

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               + E+  EG+I+ +   +G + RA   N S      + +F        Y+ +Q    
Sbjct: 160 PKKIISEL-REGVIIGSACEAGELIRAIVNNESDEKLLEIASFYD------YLEIQPIGN 212

Query: 192 Y--------------DR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
                          D        +V +LA      L+AT +  FL+ +D        A+
Sbjct: 213 NAFLIRNENFPDVQTDEDLIKINLKVAELAKKLNKMLIATCDVHFLNAKDSIYR----AI 268

Query: 235 AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                  +    +        +       +     A E  V   R+ + +++V  PI   
Sbjct: 269 LMKGKGFEDAEKQPPLYLRTTDEMLKEFSYLGEELAYEAVVTNPRKIADMVEVFKPIPDE 328

Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                        + E+ + + A       +         +  + RL+ ELN I    F+
Sbjct: 329 LYSPMIPG----ADQEIHDMSYAKARELYGENL------PKVVQDRLELELNSIIGHGFA 378

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------- 399
             +LI    ++ +  +   VG  RGS   S  A    IT+++PL                
Sbjct: 379 VLYLIAHKLVKKSLDDGYLVG-SRGSVGSSFVATMTNITEVNPLPPHWRCPHCRHSEFIE 437

Query: 400 --------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
                                       + F  F+  D   +PD D++F  D +    +Y
Sbjct: 438 DGTYGCGFDMPDKDCPHCGTKMIKDGHDIPFAVFMGFDGDKVPDIDLNFSGDYQPVAHKY 497

Query: 434 VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            +  +G + V +  T  ++  K A   V +                              
Sbjct: 498 TEELFGKDNVFRAGTIATVADKTAYGYVKK------------------------------ 527

Query: 494 DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS 551
               F + +        +  +     G+ R    H  GI  +  +  +    P+ R    
Sbjct: 528 ----FFDEKGIKKRDAYINSLVNGCTGVKRTTGQHPGGIMVIPRNMDVHHFTPIQRPADD 583

Query: 552 DLPVTQ--FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
               T           + L+K D LG    T+++   +          +          +
Sbjct: 584 TTTNTITTHFDYHSISSRLVKLDILGHDDPTVIKMLENIT--HRDPRTIPFDDPATMSIF 641

Query: 610 -----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
                       L  T GT GI +  +   RQ L+  +P    D++ +      G    +
Sbjct: 642 SSTEALGVTPEELGATSGTFGIPEFRTPFTRQMLDDTKPQKFSDLVRISGFSH-GTNVWL 700

Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
               +                     T G     + +     ++     S  D L     
Sbjct: 701 ENAQDLI-------------------TSGTCTVSDAISCRDDIMMHLIHSGIDPLFSFKT 741

Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            +   +     E  I      GI +    +  ++      Y F ++HA AY +++Y+ A+
Sbjct: 742 MEKVRKGKGLSEDDIKVMKDGGIPQWYIDSCLKI-----KYLFPRAHATAYVMMAYRIAF 796

Query: 779 MKTHYPVEFLAASMTLEMDNVEK-----------------------------------IK 803
            K HYP+ F AA  ++     +                                    + 
Sbjct: 797 CKVHYPLAFYAAYFSIRAAEFDADIISKGKLAVRDKLDEIIELEKQKKLSVKDKGFQVVL 856

Query: 804 KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
           +   +       +    +     D F + +  +     A+ G+ T  A +I++A  +  F
Sbjct: 857 ELAWEMYLRGFSVEKIDLYKSNADKFILHEKSLLPPFTALTGISTMAANNIVQARLEGEF 916

Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            S++D   R     L+  ++E L   G LD  
Sbjct: 917 TSIDDLKKRAS---LSTPIVERLREHGCLDGL 945


>gi|255652455|ref|ZP_05399357.1| DNA polymerase III alpha subunit [Clostridium difficile QCD-37x79]
          Length = 1110

 Score =  278 bits (710), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 182/964 (18%), Positives = 372/964 (38%), Gaps = 91/964 (9%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
             +     +  +     +   AIA ++   ++  ++  Q    A I+ I G +L      
Sbjct: 28  FADSCSKYDEYISLAKENNMKAIAFSNHGGIYDWVKKKQACDNAEIKYIHGVELY----- 82

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM--------YLLDQGKQSVRICL 133
               T            I L     +G + L  L S+                 + RI  
Sbjct: 83  ----TCINLEDNNRGWHIGLYAKNLKGVRELNSLTSKATSKGILKDNSDRHFYFNPRISF 138

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA-----------EKRLLTFKKLFGDRL 182
             L    ++ +I+ +   + P+ +    N   +             + LL +      R 
Sbjct: 139 DELMNT-SDNIIITSACLASPLWKLGDTNIIDIEGIEKYNYNIKKRQELLEWMSKNNHRC 197

Query: 183 YVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
           ++ +Q H    +      + + +  + +PL+A  ++   SE   E   VL    +S    
Sbjct: 198 FLEIQYHNCDSQKEYNKMLYEWSILYGIPLIAGTDTHSSSEYKAECRKVLQKSKNSFYGE 257

Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
           + +      ++              +   LE      +  + +         ++ +   +
Sbjct: 258 EDEFDLTWKNYDDLVDEFKKQNILPIDIILEAINNTNKLAAMVEDFTLDKTFKYPDLYGE 317

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
           +  +  ++ +  K +      L      +      Y+ R+  E  ++     + + L VA
Sbjct: 318 NANQTWKDYIDEKLLK-----LINVNAIEKEKIDIYKLRVQEEYEIMCNQGMASFMLFVA 372

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           + + W K N+I V P RGS  GS+ AY   ITD+D +R+   F RF N DR+S+ D D+D
Sbjct: 373 ELVNWCKDNDIHVSPCRGSVGGSLIAYITGITDVDAIRWKTAFSRFCNADRISLGDIDLD 432

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP------------- 468
           F    R +V  Y+ N++G ++V+ I+TF +++ + ++  + + L                
Sbjct: 433 FSPSDRQKVYEYIINRFGKDKVSYILTFQTIKDRGSIDVLAKGLNYDNLNLVKNIKDTFD 492

Query: 469 -----YSQVDRLCKLIPNDPA----------HPVSLQAIADDSRFREARLADPSVDRLLE 513
                YS++      I               H + L  I ++ + +         D L E
Sbjct: 493 NIFKEYSKIIIEEINIEELEGKESKSPDFIDHELYLHTIRNNKKKQRLIKLKEMWDELRE 552

Query: 514 ISQ-------KLEGLYRHASTHAAGIVIGDRPLSQLVPM-YRDVRSDLPVTQFNMKWIEK 565
            ++        + G+     TH AG++     L   + + Y+D   + PV+   MK ++ 
Sbjct: 553 HNKDLFYYFDGIRGVITSKGTHPAGMIGSPITLYDNLGVFYKDGNENSPVSFCTMKAVDS 612

Query: 566 AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
              +KFD LGLKT+ ++Q +   + +         I ++D   +  +      GIFQ E 
Sbjct: 613 LNYVKFDILGLKTIGIIQDTYRLINKEWKYAH--EINWNDKNVWEDINRINV-GIFQFEG 669

Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
                 L   +  C+ D+  + +  RP          NR+  K         ID +LK+ 
Sbjct: 670 DYAFDLLSTYKAKCVNDMSLVNASLRPSGKSYRERLINREFNKNP----SEEIDELLKDN 725

Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF-----ISGASKNG 740
            G +++QE  ++    +  +  S AD  RRA+GKK   E++KQ  +              
Sbjct: 726 NGFLVFQEDTIKFLTDICDFDGSLADTTRRAIGKKDDVELEKQLPKILNGYCKHSNKPKE 785

Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
           I++  A    ++++  ++Y F  +H+  Y++  Y    ++ +YP+EF  + +    +  +
Sbjct: 786 IAEKEAKEFIQIISDSSEYQFGYNHSTGYSMNGYICGMLRYYYPLEFTTSYLNWADNEED 845

Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD--NRIYYSLAAIKGVGTTTARHIMEASA 858
                   A+++ I++          ++ +    N IY  +++IK + T  A ++     
Sbjct: 846 LNNGIKL-AKEYGIEVKNCKFRYSRAEYFMDKKTNTIYKGISSIKYLNTEVAEYLYSLRN 904

Query: 859 DKPFDSLEDFCSRVDS-KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
           +  +++       +D  K +N R LE L+     + FG +  +LL  +     + +  + 
Sbjct: 905 N-EYNTFTKLL--IDLNKNINSRQLEILIKLNFFEEFGKT-SKLLNIVQVFSAFYEKKQL 960

Query: 918 NRTN 921
            +TN
Sbjct: 961 KKTN 964


>gi|213027544|ref|ZP_03341991.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 533

 Score =  278 bits (710), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 234/537 (43%), Positives = 334/537 (62%), Gaps = 23/537 (4%)

Query: 184 VNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
           + L R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +  
Sbjct: 1   MELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDD 60

Query: 243 KDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             RPR  +P  Y+++  EM  +FSD+PEALENTVEIA+RC+  +++           +  
Sbjct: 61  PKRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYF-----LPQFP 115

Query: 302 DIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                 E+ L  K+  GLE RLA        +     +Y +RLD EL VI +M F GYFL
Sbjct: 116 TGDMTTEDYLVKKSKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFL 175

Query: 359 IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           IV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R+SMPDF
Sbjct: 176 IVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDF 235

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D+DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL
Sbjct: 236 DVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKL 295

Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
           +P DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    
Sbjct: 296 VPPDPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTK 354

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-- 596
           ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ + +R  K   
Sbjct: 355 ITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGE 414

Query: 597 ---DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPG
Sbjct: 415 PPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPG 474

Query: 654 PIDNIVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
           P+ + +V       +   +     +   H  + P+L+ T G+I+YQEQVMQIA    
Sbjct: 475 PLQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIALGYF 531


>gi|2996335|gb|AAC13215.1| DNA polymerase III alpha subunit homolog [Yersinia pestis KIM 10]
          Length = 1135

 Score =  277 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 248/915 (27%), Positives = 402/915 (43%), Gaps = 103/915 (11%)

Query: 70  IIGCQLDIDMQDNLKMTNQGKTP---------FPTVPSIVLLVSTAEGYQRLIELVSRMY 120
           I G +L++      +   +                      L+   +GY+ + EL++   
Sbjct: 20  ICGVKLNVVDDPTYEHRARLAKESERCMESLVRDRSYCFTALIKNEQGYRDVCELMTLAN 79

Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG- 179
             +Q     R+ L  L     +G I+L    +  I   F         K + T     G 
Sbjct: 80  KREQFYFVPRLALDQLAAAYAKGNIIL---LTSDIGSVFQRRDFA---KIIGTLVTAGGR 133

Query: 180 DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
           D  Y  +  H   +      + +++A   ++  VA   + + + +D +  D+   V ++ 
Sbjct: 134 DNFYSVVYPHPTPFYDQINVRAMKVASALKIEPVAFYPAYYEAVDDADIKDIAHMVTNNI 193

Query: 239 VVSQKDR-----PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            + Q  R      R    +  ++  E +  FS   +        +     I++       
Sbjct: 194 KIDQPHRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIEACTWRW- 252

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             +      +  +E   L   AVAGL  R      G        + Y  RL +E++ + R
Sbjct: 253 HELPPALPKMADDEPATLMKLAVAGLRKRLTTKEFGYTPPASEHRVYVDRLKYEMDTLTR 312

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           + F GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+R  LLFERF+NP
Sbjct: 313 LGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFINP 372

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
           +R+ +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +ALRD  R     Y 
Sbjct: 373 ERLDLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARI----YG 428

Query: 471 QVDRLCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
                  +            ++ +   +               + + KL+ L R    HA
Sbjct: 429 VDAADMAVSKEFKNLEDDSLSLEELREQLASLDKYATKYPEAFKAACKLQSLMRGFGRHA 488

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
           AG+++   PL +  P+      +     F+ ++ E  GLIK D LGL TL LL  +  ++
Sbjct: 489 AGMIVAGVPLVERTPVELR--GNARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRYI 546

Query: 590 AQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ----PDCIEDII 644
            +  G  ++L  IP DD +         T G+FQLES  MR+ L+ +     P   + ++
Sbjct: 547 KESTGEDINLDAIPLDDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTVV 606

Query: 645 ALVSLYRPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
           A  +L+RPGPI + ++ +     K      S+HP++D +  ET GVI+YQEQ M   +LL
Sbjct: 607 ATTALFRPGPIQSGMLDDYVSVAKGFMAPQSLHPVLDELTAETNGVILYQEQTMNATRLL 666

Query: 703 SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS------------------------- 737
           +G++++EAD +R+A+GKK  E+M    E+F+  A                          
Sbjct: 667 AGFTMAEADGVRKAIGKKDMEKMKSMGEKFVVQAQAGWIDVEMEDGTTQRIHRAEHFKCE 726

Query: 738 ---------------------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
                                      + G+S+T A  I++   K   Y FNKSH  AY+
Sbjct: 727 DGALRTVEEALEAGVKLPMAAVRVTGSQPGLSETKAKEIWDAFEKNGAYQFNKSHPVAYS 786

Query: 771 VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
           +ISYQ+ W+KTHYP EF AA++T  +   +K +   +DA  + I ++PP VN      ++
Sbjct: 787 LISYQSMWLKTHYPAEFFAAALT--ILGEDKHQGLVKDALTYGIHVLPPDVNVSSNRIEI 844

Query: 831 ----GDNRIYY-SLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCSRVDSK--KLNRRV 881
                 +++ Y   +A+KG      + IM A       F+SLE F   V+ +    N RV
Sbjct: 845 RTLEDGSQVLYAPFSAVKGCSENGCQAIMRAREKVGGKFESLEQFEEAVEKRACACNSRV 904

Query: 882 LESLVFAGALDCFGY 896
            ESL   GA      
Sbjct: 905 RESLQKVGAFASIEP 919


>gi|228904737|ref|ZP_04068791.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
 gi|228854751|gb|EEM99355.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
          Length = 620

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 163/584 (27%), Positives = 271/584 (46%), Gaps = 79/584 (13%)

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
               +E +       RL E++ ++E + R    HA G++I   P++  V + R  +    +
Sbjct: 8    EEIKEVKAYAKRYPRLFELALEVESMPRTQGIHACGMLITAEPITNEVALVRG-KGGESI 66

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTT 614
              ++   +E  G IKFDFLGLK L++++     +  R    +D+  +  +D +T+ ++  
Sbjct: 67   AGYDGPTLEAKGYIKFDFLGLKNLSVVELCRRMVEDRYGYLIDVDNLIPEDQKTFDMIQR 126

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
              T G+FQ+ES GM++   G+     E +IA VSLYRPGP+D I  Y    NG E++  +
Sbjct: 127  GETDGVFQIESDGMKKMFMGLNKVDFETLIAGVSLYRPGPMDYIPKYTALANGHEEVPQV 186

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
            HP  D + + T  ++IYQEQVMQ++  ++GYS  EADVLR+A+GKK  E ++   E   +
Sbjct: 187  HPAFDEITRNTFSIMIYQEQVMQVSTEMAGYSKGEADVLRKAVGKKKIEILEPALEELHN 246

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
              ++N +   +A  I + +  FA Y FN+SHAA YA I+YQTA++K +YP+E++ A + +
Sbjct: 247  RLTQNNVPTQVATKICDDIRPFAGYAFNRSHAACYAYIAYQTAYLKANYPLEYMTALLQV 306

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHI 853
                 +K+ K  +  R   I+++PP +N   + F +  +N I + L AIKG+G  T   I
Sbjct: 307  FYTEEDKVVKLVKVIRDMGIEVLPPDINRSEIGFTIEGENAIRFGLGAIKGLGEATLEAI 366

Query: 854  MEASA----------------------------------------DKPFDSLEDFCSRVD 873
            +E                                             PF S +D   R+ 
Sbjct: 367  IEERKPRMAPAVRDEDGLETVISKEEADEIAATPDLGIVVGSVAVGGPFTSAQDVIKRIP 426

Query: 874  SKKLNRRVLESLVFAGALDCFGY----SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             K  N++ + SL ++GA D        +R + L  + +I+                    
Sbjct: 427  KKNFNKKAITSLCYSGAFDALAEGLCNNRFEYLAHMFDIR-------------------- 466

Query: 930  EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT 989
              G   D   +E+ +     ++FE E+ VLG Y SGH LD             +E     
Sbjct: 467  --GEAPDSELIEQITKYTDRIKFEKEREVLGLYISGHVLDRLAE------PTDWEGLDDA 518

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 + L       +  +T+KG  + ++       E     FP
Sbjct: 519  THTTMVAL----TEARVIRTKKGDNMAFLRVDTLEGERSLTLFP 558


>gi|284048706|ref|YP_003399045.1| DNA polymerase III, alpha subunit [Acidaminococcus fermentans DSM
            20731]
 gi|283952927|gb|ADB47730.1| DNA polymerase III, alpha subunit [Acidaminococcus fermentans DSM
            20731]
          Length = 1191

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 166/981 (16%), Positives = 315/981 (32%), Gaps = 188/981 (19%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC----AAG- 66
            V L  H+  S ++G   +  ++D        A+A+TD   + +      +A       G 
Sbjct: 277  VELHCHTKMSKMDGLTPIKELVDTAVRWGHKALALTDHGVVQAFPFAYDEAKDLAKKNGW 336

Query: 67   -IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL--D 123
             ++ I G +  +                     I+LL    EG + L  LVS  +L    
Sbjct: 337  ELKLIYGVEGYLCHS----------REDKKNYHIILLAKNVEGLRNLYRLVSLSHLQYFG 386

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
               +  R+    L +   +GLI+ +  ++G + RA          K + ++        Y
Sbjct: 387  GKPKRPRMTKGLLDQY-RDGLIIGSACAAGEVYRAILAGLPDEEVKEIASYYD------Y 439

Query: 184  VNLQRHRGYD-----------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            + +Q     +                 +    +++ L        VAT +  FL+ ED  
Sbjct: 440  LEIQPTGNNNYLIRDPRFPDIHSVEDLQAINKKILALGDELGKLTVATCDVHFLNPEDAL 499

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
            A  +L A                P +       +         A E  VE A + S  ++
Sbjct: 500  ARKILQAG------MGYPDEEQPPLYLRTTEEMLEEFSYLGDRAYEVVVENANKISDQVE 553

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               P+  R             + ++ + + A                 +    RL  EL+
Sbjct: 554  HFKPVPDRDQL--YSPTIPGAKEKVESLSYARAHEWYGP------KLPKIVEDRLKQELS 605

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL-------- 398
             I    FS  + I    ++ +  +   VG  RGS   S  A  L IT+++PL        
Sbjct: 606  SIIGNGFSVLYYIAHLLVKKSNDDGYMVG-SRGSVGSSFVATMLNITEVNPLVPHYRCPH 664

Query: 399  ---------------------------------RFSLLFERFLNPDRMSMPDFDIDFCQD 425
                                               ++ F  FL      +PD D++F  +
Sbjct: 665  CYHTEFFTDGSVGSGFDLPEKDCPECGTPMIRDGHNIPFAVFLGFHGDKVPDIDLNFSGE 724

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +    +Y +  +G + V +  T G+++ K A   + +  +               +P  
Sbjct: 725  YQPRAHKYTEELFGRDNVFRAGTLGTIKDKTAYGYIKKYYE------------TRGEPKR 772

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLV 543
               ++ +                        KL G+ R    H  GIV+  R L    + 
Sbjct: 773  TAFIEGLIP----------------------KLAGVKRTTGQHPGGIVVIPRDLDVHYIT 810

Query: 544  PMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+             T ++   I++  ++K D LG    T+++     L +   +     
Sbjct: 811  PVSYPADDPSCGTITTHYDFHSIDE-RIVKLDILGHDDPTVIKMLDRMLGEDYCRNIP-- 867

Query: 601  IPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
                D +T  L  +  +LG+   Q+ +      +       +  +I   S  +P    ++
Sbjct: 868  --IGDPDTMELFLSTKSLGVTPEQIGTDVATYGVPECGTRFVRQMI---SDVKPKNFSDL 922

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
            +  +   +G +  ++    +      T+  I  ++ +M       G   S A  +     
Sbjct: 923  LRISGYSHGTDVWLNNAQDLIRSGTPTEDTISTRDDIMNWLIN-KGMEPSMAFGIMEWSR 981

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K    +   + ++  +        K    + +        Y F K+HA AY + +Y+ A+
Sbjct: 982  KGKAHKKGFEPDQLEA------FEKAHIPDFYIKACTTLQYLFPKAHAVAYVLSAYRIAY 1035

Query: 779  MKTHYPVEFLAASMTLEMDNVEKI---------------------------------KKF 805
             K H+P EF AA  T+   + +                                    + 
Sbjct: 1036 CKVHHPKEFYAAYFTVRAPHFDYTLVHKGLDYMKRFIQNVNAQGTKASVNDKDTATYMEL 1095

Query: 806  CQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
            C +  +         +       F V +  +   L AI G+G   A  I+EA    PF S
Sbjct: 1096 CVEMLERGFVFDEVDLYKSDAHKFLVTEKGLLPPLGAIGGIGGVAAEGIVEARKKGPFIS 1155

Query: 865  LEDFCSRVDSKKLNRRVLESL 885
             ED  +R      N  +L+ L
Sbjct: 1156 QEDLRNRAKISTSNVEILDEL 1176


>gi|166214646|ref|ZP_02240681.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166204168|gb|EDR48648.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Antiqua
           str. B42003004]
          Length = 949

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 245/882 (27%), Positives = 394/882 (44%), Gaps = 94/882 (10%)

Query: 94  PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSG 153
                   L+   +GY+ + EL++     +Q     R+ L  L     +G I+L    + 
Sbjct: 7   DRSYCFTALIKNEQGYRDVCELMTLANKREQFYFVPRLALDQLAAAYAKGNIIL---LTS 63

Query: 154 PIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPL 211
            I   F         K + T     G D  Y  +  H   +      + +++A   ++  
Sbjct: 64  DIGSVFQRRDFA---KIIGTLVTAGGRDNFYSVVYPHPTPFYDQINVRAMKVASALKIEP 120

Query: 212 VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR-----PRVTPDHYLKNRSEMVSIFSD 266
           VA   + + + +D +  D+   V ++  + Q  R      R    +  ++  E +  FS 
Sbjct: 121 VAFYPAYYEAVDDADIKDIAHMVTNNIKIDQPHRLRIPHQRDNAVNGRRHLLEALKAFSV 180

Query: 267 LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR---L 323
             +        +     I++         +      +  +E   L   AVAGL  R    
Sbjct: 181 RMDVPVTAAMASTTQDTIIEACTWRW-HELPPALPKMADDEPATLMKLAVAGLRKRLTTK 239

Query: 324 AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
             G        + Y  RL +E++ + R+ F GYFL+V D +  +++  IPVGPGRGS AG
Sbjct: 240 EFGYTPPASEHRVYVDRLKYEMDTLTRLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAG 299

Query: 384 SVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
           S+ A+ + IT++DP+R  LLFERF+NP+R+ +PD D+DF Q RR EVI Y+  +YG + V
Sbjct: 300 SLVAWCIGITNVDPIRHGLLFERFINPERLDLPDADLDFSQARRHEVIEYLNERYGEDYV 359

Query: 444 AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD-DSRFREAR 502
           A I  F  L A +ALRD  R     Y        +            ++ +   +     
Sbjct: 360 AGIPNFTYLGAASALRDTARI----YGVDAADMAVSKEFKNLEDDSLSLEELREQLASLD 415

Query: 503 LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
                     + + KL+ L R    HAAG+++   PL +  P+      +     F+ ++
Sbjct: 416 KYATKYPEAFKAACKLQSLMRGFGRHAAGMIVAGVPLVERTPVELR--GNARCIAFDKRY 473

Query: 563 IEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
            E  GLIK D LGL TL LL  +  ++ +  G  ++L  IP DD +         T G+F
Sbjct: 474 CEAMGLIKLDVLGLATLDLLDSAKRYIKESTGEDINLDAIPLDDRKVLDGFAAGYTQGVF 533

Query: 622 QLESSGMRQALEGMQ----PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK--EKIVSIH 675
           QLES  MR+ L+ +     P   + ++A  +L+RPGPI + ++ +     K      S+H
Sbjct: 534 QLESGPMRKLLKDLGGGIEPMSFKTVVATTALFRPGPIQSGMLDDYVSVAKGFMAPQSLH 593

Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
           P++D +  ET GVI+YQEQ M   +LL+G++++EAD +R+A+GKK  E+M    E+F+  
Sbjct: 594 PVLDELTAETNGVILYQEQTMNATRLLAGFTMAEADGVRKAIGKKDMEKMKSMGEKFVVQ 653

Query: 736 AS----------------------------------------------------KNGISK 743
           A                                                     + G+S+
Sbjct: 654 AQAGWIDVEMEDGTTQRIHRAEHFKCEDGALRTVEEALEAGVKLPMAAVRVTGSQPGLSE 713

Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
           T A  I++   K   Y FNKSH  AY++ISYQ+ W+KTHYP EF AA++T  +   +K +
Sbjct: 714 TKAKEIWDAFEKNGAYQFNKSHPVAYSLISYQSMWLKTHYPAEFFAAALT--ILGEDKHQ 771

Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKV----GDNRIYY-SLAAIKGVGTTTARHIMEASA 858
              +DA  + I ++PP VN      ++      +++ Y   +A+KG      + IM A  
Sbjct: 772 GLVKDALTYGIHVLPPDVNVSSNRIEIRTLEDGSQVLYAPFSAVKGCSENGCQAIMRARE 831

Query: 859 --DKPFDSLEDFCSRVDSK--KLNRRVLESLVFAGALDCFGY 896
                F+SLE F   V+ +    N RV ESL   GA      
Sbjct: 832 KVGGKFESLEQFEEAVEKRACACNSRVRESLQKVGAFASIEP 873


>gi|213610033|ref|ZP_03369859.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 239

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 75/249 (30%), Positives = 119/249 (47%), Gaps = 12/249 (4%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
             P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      AG
Sbjct: 2   SEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAG 61

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           I+PI+G   ++  +               +  + +L +   GYQ L  L+S+ Y    G 
Sbjct: 62  IKPIVGADFNVHNE----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGA 111

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
               I   WL E+  EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 112 AGPIIERDWLVEL-KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLEL 170

Query: 187 QRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R    D        V+LA    LP+VATN+  FL  +D++AH++ +A+     +    R
Sbjct: 171 IRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKR 230

Query: 246 PRVTPDHYL 254
           PR       
Sbjct: 231 PRNYSPQQY 239


>gi|320093660|ref|ZP_08025539.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 178 str.
            F0338]
 gi|319979392|gb|EFW10875.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 178 str.
            F0338]
          Length = 599

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 143/556 (25%), Positives = 237/556 (42%), Gaps = 60/556 (10%)

Query: 522  YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             RH   H  G+V+ D+P+S + P+         V Q++ +  E AGL+KFD LGL  L+ 
Sbjct: 5    PRHMGIHPGGMVLTDQPVSSVCPISWGSVPGRSVLQWDKEDCEDAGLVKFDLLGLGMLSA 64

Query: 582  LQ-----------------KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
            L+                 +S   L +RG+ + L  +P +D   Y LL    T+G+FQ+E
Sbjct: 65   LRLAFDRLAGAPEGEPWGRRSAPLLGRRGLPIGLHTLPQEDPGVYDLLCAADTVGVFQVE 124

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDPML 682
            S      L  ++P C  DI+  V+L RPGPI   ++  +  R+ G+E++  +HPL++P L
Sbjct: 125  SRAQMSTLPRLKPRCFYDIVVEVALIRPGPIQGGSVTPFLRRRAGEEEVSYLHPLLEPAL 184

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM-GKKIKEEMDKQKERFISGASKNGI 741
             +T GV ++QEQ+M+IA   +G++ ++AD LRRA+  K+  E ++  +   + G  + GI
Sbjct: 185  AKTLGVPLFQEQLMRIAADAAGFTPAQADRLRRALGAKRGVERVEGLRPALMEGMGRRGI 244

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
                   I E L  FAD+GF +SHA ++A I Y +AW+K   P  F AA +  +      
Sbjct: 245  DAATGAAIVEQLKGFADFGFPESHAFSFAHIVYASAWLKLRAPEHFYAALLACQPMGFYS 304

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN--------------------------RI 835
                  DAR+  +++ PP VN   V   V +                            +
Sbjct: 305  PSSLVHDARRHGVRVAPPDVNHSRVGAVVEEADEGEGGVPRAPEPVPQAVPLDVDPRLAV 364

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L +I G+G    R    A  + P+ S+ D   R    +L  + LE L  AGAL   G
Sbjct: 365  RIGLGSIAGLGAAAERT-ATARGEGPYSSVGDLARRA---RLGEKDLERLAHAGALASLG 420

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             SR + + S        +            +   +                ++      +
Sbjct: 421  ASRREGMWSA-GALGAPRGPVGADGGWQPALPGIDPA------PAPDLPAMDAVEELRAD 473

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
                G     HP  + +  L   G            G  + +A ++  +Q+  T  G+  
Sbjct: 474  TESTGLTTGDHPFALVRAHLDP-GALPVSALHGCDDGAIVSVAGLITHRQRPPTAAGT-- 530

Query: 1016 GWVTFSEPAKEYEANF 1031
             ++T  + +       
Sbjct: 531  VFLTLEDESGMVNVTC 546


>gi|37784574|gb|AAP47638.1| DnaE precursor [Aphanothece halophytica]
          Length = 712

 Score =  272 bits (695), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 232/608 (38%), Positives = 361/608 (59%), Gaps = 33/608 (5%)

Query: 185 NLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +Q H    DR   +++V+++   ++ +VATN+S F+S  D EAHD L+ +  + ++++ 
Sbjct: 1   EIQDHGSPEDRIVNTEIVKISQELDIKIVATNDSHFISCNDVEAHDALICIQTNKLITED 60

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            R R +   YLK+  EM  +F D    + +E+ +      +  ++ +  +    I     
Sbjct: 61  KRLRYSGTEYLKSADEMRQLFRDHLSDDVIESAIANTVEVAEKVKPYNILGEPRIPDYPV 120

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                 +  L      GL  RL  G  ++   ++ Y+ RL+ EL ++    FS YFL+V 
Sbjct: 121 PSGYNADTYLEELTWNGLMERL--GCRSRSEISETYKTRLERELTIMQERGFSTYFLVVW 178

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           D+I++A+ +NIPVGPGRGS AGS+ AYAL IT+IDP+   LLFERFLNP+R SMPD D D
Sbjct: 179 DYIKYARDHNIPVGPGRGSAAGSLVAYALKITNIDPVHHGLLFERFLNPERKSMPDIDTD 238

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC +RRDEVI YV  +YG ++VAQIITF  + +KA L+DV R L +PYS+ DRL K+IP 
Sbjct: 239 FCIERRDEVIEYVTRRYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYSESDRLAKMIPV 298

Query: 482 DPAHPVSLQAI----ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
               P  L  +      +  F++   +D  V R ++++ ++EG  +    HAAG+VI   
Sbjct: 299 ARGKPAELTKMISDDTPEPEFKKLYDSDEKVRRWVDMAIRIEGTNKTXGVHAAGVVISKE 358

Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV- 596
           PL ++ P+ ++      +TQ+  +  E  GL K  FLGLK LT  Q++ D L +      
Sbjct: 359 PLDEVXPLQKN-NDGAVITQYXXEDXEAXGLXKMXFLGLKNLTTFQRTADLLRKIKGXKV 417

Query: 597 --------------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
                                 +  P D  +TY+L+      G+FQLESSGM + ++ ++
Sbjct: 418 GLDXLPLDEIHSRKILAKGEIKNTKPPDIQKTYNLIEKGWLEGVFQLESSGMLKVVQDLK 477

Query: 637 PDCIEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQ 694
           P  IED+ ++++LYRPGP+D   I  + +RK+G+E+I+  HP+++P+L ET  V++YQEQ
Sbjct: 478 PSSIEDLSSILALYRPGPLDAGLIPKFIDRKHGREEIIYEHPILEPILDETYAVMVYQEQ 537

Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
           +M+IAQ ++GYSL +AD+LRRAMGKK  +EM K +E FI GA+KNG+ +  A ++F+ + 
Sbjct: 538 IMKIAQDMAGYSLGQADLLRRAMGKKKVKEMQKHREIFIDGATKNGVKQETAEHLFDQMI 597

Query: 755 KFADYGFN 762
           KFA+Y  +
Sbjct: 598 KFAEYCLS 605


>gi|159026962|emb|CAO86680.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 445

 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 81/287 (28%), Positives = 146/287 (50%), Gaps = 10/287 (3%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   DN +K++K+ ++ ++ NI 
Sbjct: 33   IASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDNQDKVEKYRENCQKMNID 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCSRVD 873
            + PP +N     F     +I + L+A++ +G      I++A       F SL DFC RVD
Sbjct: 93   VEPPDINRSQKHFTPIGRKILFGLSAVRNLGENAIEAILKAREATGGKFTSLGDFCERVD 152

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             + +N+R LE+L++ GA D    +R QL++ L+ +  +AQ   K + +   NIF    G+
Sbjct: 153  LRVINKRALETLIYCGAFDKIQPNRHQLIEDLELVVAWAQKRTKEKESGQMNIFDMLGGS 212

Query: 934  --------FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                    F    +       +   + + E+  LGFY S HPL   +   + +      +
Sbjct: 213  TENKQESEFEQSPSATPVEDFSLQEKLKLEKEHLGFYVSEHPLKALQRAAQVLSPINLAD 272

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +    ++ + ++  T+KG+ + ++T  + + + EA  F
Sbjct: 273  LEEHKTRKKVSAIVLLNAVKKIMTKKGTPMAFLTLEDASGQSEAVVF 319


>gi|145628378|ref|ZP_01784179.1| DNA polymerase III subunit alpha [Haemophilus influenzae 22.1-21]
 gi|144980153|gb|EDJ89812.1| DNA polymerase III subunit alpha [Haemophilus influenzae 22.1-21]
          Length = 309

 Score =  271 bits (693), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 92/322 (28%), Positives = 159/322 (49%), Gaps = 19/322 (5%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1   MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +G++PIIG  + +          +          + LL    EGY+ +  L+S+ Y    
Sbjct: 61  SGMKPIIGADVKV----------KSTLCGDEYFYLTLLAKNNEGYKNITLLLSKAYQR-G 109

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
                 I   WL E   EG+I+L+GG+ G + +     +    E  +  +++ F D  Y+
Sbjct: 110 YNDLPYIDQDWLIE-HREGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYL 168

Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            L R    D  R     ++LA +H LPLVATN+ +FL  +D+EAH++ +A+     +   
Sbjct: 169 ALTRTGKPDEERYIQAALKLAKSHGLPLVATNDVMFLKSDDFEAHEIRVAIHDGYTLDDP 228

Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            RP+  T   Y ++  EM  +F+D+P ALENT+ IA+RCS  L++       +   +   
Sbjct: 229 KRPKYYTSQQYFRSEDEMCKLFADIPSALENTLLIAQRCSVTLRLGQ-----YFLPQFPT 283

Query: 303 IQKEEENELRNKAVAGLEVRLA 324
                E+ L  K+  GLE RLA
Sbjct: 284 GDLSTEDFLVQKSKEGLEERLA 305


>gi|166366494|ref|YP_001658767.1| DNA polymerase III subunit alpha [Microcystis aeruginosa NIES-843]
 gi|166088867|dbj|BAG03575.1| DNA polymerase III alpha subunit [Microcystis aeruginosa NIES-843]
          Length = 445

 Score =  270 bits (691), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 81/287 (28%), Positives = 146/287 (50%), Gaps = 10/287 (3%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   DN +K++K+ ++ ++ NI 
Sbjct: 33   IASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDNQDKVEKYRENCQKMNID 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCSRVD 873
            + PP +N     F     +I + L+A++ +G      I++A       F SL DFC RVD
Sbjct: 93   VEPPDINRSQKHFTPIGRKILFGLSAVRNLGENAIEAILKAREATGGKFTSLGDFCERVD 152

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             + +N+R LE+L++ GA D    +R QL++ L+ +  +AQ   K + +   NIF    G+
Sbjct: 153  LRVINKRALETLIYCGAFDKIQPNRHQLIEDLELVVAWAQKRTKEKESGQMNIFDMLGGS 212

Query: 934  --------FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
                    F    +       +   + + E+  LGFY S HPL   +   + +      +
Sbjct: 213  TENKQESEFEQSPSATAVEDFSLQEKLKLEKEHLGFYVSEHPLKALQRAAQVLSPINLAD 272

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     +    ++ + ++  T+KG+ + ++T  + + + EA  F
Sbjct: 273  LEEHKTRKKVSAIVLLNAVKKIMTKKGTPMAFLTLEDASGQSEAVIF 319


>gi|323351877|ref|ZP_08087528.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis VMC66]
 gi|322121934|gb|EFX93666.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
            sanguinis VMC66]
          Length = 583

 Score =  270 bits (690), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 159/501 (31%), Positives = 257/501 (51%), Gaps = 27/501 (5%)

Query: 534  IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQR 592
            + D  L+  +P+      D+ +TQ++   +E  GL+K DFLGL+ LT +Q+  +  L + 
Sbjct: 1    MSDNDLTDQIPLKYG--EDMYITQYDAHGVESNGLLKMDFLGLRNLTFVQRMKEATLKKY 58

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             V ++++ I  +D  T  L     T GIFQ E  G    L+ +QP C E+++A  SL RP
Sbjct: 59   EVDIEIAEIDLEDAGTLKLFAAGQTKGIFQFEQPGAISLLKRVQPVCFEEVVATTSLNRP 118

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
            G  D I  +  RK+G E++  I   +  +L  T G+++YQEQVMQ+AQ   G+SL +AD+
Sbjct: 119  GASDYIDNFVKRKHGLEQVELIDDSLADILAPTYGIMLYQEQVMQVAQRFGGFSLGKADI 178

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            LRRAMGKK   EM + +E F++GA K G S++ A  +F ++ KFA YGFN+SHA AY+ +
Sbjct: 179  LRRAMGKKNAAEMHRMQEDFVAGALKLGHSESKAKEVFAIMEKFAGYGFNRSHAYAYSAL 238

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
            ++Q A+ K HYP  F    +            +  DA  F+ +  P S+N      K  D
Sbjct: 239  AFQLAFFKAHYPDVFFDVMLN------YSSSDYITDALSFDFETAPLSINNIPYHDKFQD 292

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             +I+  L  IKG+    A  I+E   +  F  +EDF  R+        +L  L+  G  D
Sbjct: 293  KKIFLGLKNIKGLPRDLAYWIIEERQNAAFTGVEDFILRLPQNYHKIPLLTPLIQLGLFD 352

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
             F  +R ++L +L N+  +A  +         ++FA    ++++          + + +F
Sbjct: 353  SFEKNRQKILANLPNLFVFADEL--------GSLFADTTYSWTEA------QDFSDAEKF 398

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
            E EQ ++G   S HPL      L K   + +         +  R+ A V S +  +T+KG
Sbjct: 399  ELEQSIIGVGLSDHPL----VKLAKEADQPFSWISELTENSRARILAEVQSIKTIRTKKG 454

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
              + ++  S+  K+ +   FP
Sbjct: 455  ENMAFLQVSDTKKKLDVTLFP 475


>gi|325290365|ref|YP_004266546.1| DNA polymerase III, alpha subunit [Syntrophobotulus glycolicus DSM
            8271]
 gi|324965766|gb|ADY56545.1| DNA polymerase III, alpha subunit [Syntrophobotulus glycolicus DSM
            8271]
          Length = 1250

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 165/1000 (16%), Positives = 322/1000 (32%), Gaps = 211/1000 (21%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  S ++   S  +++ + A     AIAITD   + +  +  + A  +GI+ I+
Sbjct: 349  VELHLHTKMSEMDAVSSAQSLVRRAALWGHQAIAITDHGVVQAFPDAVESAEKSGIKVIL 408

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +   D                 +++L     G   L +LV+  ++ +   +  RI
Sbjct: 409  GMEGYLIEDDPQS---------QGYYHVIILAKNQTGLNNLYQLVTGSHI-EHFYRRPRI 458

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRA-FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              S L++   EGLI+ +   +G + RA     S +  +K    +        Y+ +Q   
Sbjct: 459  SKSQLKKY-REGLIIGSACEAGELMRAVLRQASWEDLKKIASFYD-------YLEIQPTG 510

Query: 191  GYD--------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
                             R     +V+L      P+ AT +  FL  ED     +LMA   
Sbjct: 511  NNQFLIPKGEIRDEEGLRDLNRTIVKLGDELGKPVAATCDVHFLDAEDEVFRRILMAG-- 568

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
                 +    +        +       +    +A E  V      +  ++   P    F 
Sbjct: 569  --KGYEDADTQAPLYFRTTDEMLEEFSYLGEDKAYEVVVTNTVAIAEGIENLKPFPDGFF 626

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            E + +         ++  A+     +                + L  EL+ I    F+  
Sbjct: 627  EPKIEG----AAERIKEMALKKAAEQYGDPL------PDTVAKALQKELHSIIGNGFAVL 676

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------- 399
            +LI    ++ + ++   VG  RGS   S+ A    IT+++PL                  
Sbjct: 677  YLIAHLLVKKSNEDGYLVG-SRGSVGSSLVATMTGITEVNPLPPHYHCTNPSCLYSEFLT 735

Query: 400  --------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
                                        + FE FL      +PD D++F  + +    +Y
Sbjct: 736  DGSAGSGVDLPDKTCPRCGLELSKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHKY 795

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
             +  +G E V +  T  ++  K A   V   L                            
Sbjct: 796  TEEIFGKENVFRAGTISTVAEKTAFGFVKNYLD--------------------------- 828

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG--IVIGDRPLSQLVPMYRDVRS 551
                    R    +   L  + +   G+ R    H  G  ++  +  +    P+ +    
Sbjct: 829  -------ERSIKYNQTELNRLVRGCAGVKRTTGQHPGGLMVIPKECDVYNFTPLQKPAND 881

Query: 552  --DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
                 +T           L+K D LG    T+++     + +    +D   I  DD  T 
Sbjct: 882  SKTETITTHFDYHSISGRLVKLDILGHDDPTMIK-----MLEDFTGIDAQEIRLDDERTL 936

Query: 610  HLLTTKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             L ++                T G+ +  +  +RQ LE  +P     ++ +  L   G  
Sbjct: 937  SLFSSPEALGVKAEDIGSNTGTFGVPEFGTKFVRQMLEDTKPKTFSHLVRISGLSH-GTN 995

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
              +    +              +     +   +I  ++ +M       G    +A  +  
Sbjct: 996  VWLGNAQDL-------------VLNGTADISQIIACRDDIMVYLIQ-KGLDPQKAFKIME 1041

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
             + K    + D           +  + +    +  ++      Y F K+HA AY +++++
Sbjct: 1042 QVRKGKGLKADDV-----EEMLQFNVPQWYIDSCQKI-----SYMFPKAHAVAYVMMAFR 1091

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVE---------------------------------KI 802
             AW K + P  F AA  T+  +  +                                  I
Sbjct: 1092 IAWFKLNCPEAFYAAFFTVRAEEFDAEMICQGLDHCKKIAAEMAGFGNKATQKEKGLLTI 1151

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
             +   +     I +    +       F++ D  I    ++I+G+G T A  ++    +  
Sbjct: 1152 LELAIEMYCRGISLRKVDLWESDATTFQITDTGILPPFSSIQGLGETAANSLVALRRENK 1211

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
              S+ED  +     K+++ V+E L   G L+     R QL
Sbjct: 1212 IRSVEDMQT---FGKISKPVVEVLQKHGCLNGL-PERNQL 1247


>gi|312898623|ref|ZP_07758013.1| DNA polymerase III, alpha subunit [Megasphaera micronuciformis F0359]
 gi|310620542|gb|EFQ04112.1| DNA polymerase III, alpha subunit [Megasphaera micronuciformis F0359]
          Length = 1202

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 161/988 (16%), Positives = 312/988 (31%), Gaps = 191/988 (19%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H++ S ++  +++ +++  +     PAIA+TD   + S       A A G++ I 
Sbjct: 290  VELHLHTTMSDMDALITVKDLIKTVKKWNHPAIAVTDHGVVQSFPMLQSVAKANGVKVIY 349

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +  ++                 I++L     G + L +LVS  +L    +   RI
Sbjct: 350  GMEGYLFDEE-----------IDKSYHIIILAKNQVGIRNLYKLVSISHLKYIYRGRPRI 398

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS--SQVAEKRLLTFKKLFGDRLYVNLQ-- 187
                L E   EGLI+ +   +G + R+           +K    +        Y+ +Q  
Sbjct: 399  PRKILNEY-REGLILGSACEAGELVRSMVQKRLPYDELKKIAEYYD-------YLEIQPI 450

Query: 188  -------RHRGYDRY-----RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
                   R    D           ++++        VAT ++ F+++ED    ++LM   
Sbjct: 451  SNNGFLVREGFVDDEEGLRDINRTILKIGDELGKMTVATCDAHFMNKEDKIYREILM--- 507

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
              T    +D       +       +        +  E  V                +P+ 
Sbjct: 508  --TGKGFRDAQFQPDLYLRTTDEMLEEFAYLGTDRAEEVVITNPNKVNDWVEEVTPVPKE 565

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                     +     L+   +                      +RLD E   I    F  
Sbjct: 566  NL--YFPRIEGSSEALKEMCLRKAHKIYGTPL------PTVVEERLDEEFTSIFGNGFGV 617

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------- 399
             + I    ++ +  +   VG  RGS   S  A    IT+++PL                 
Sbjct: 618  LYYIAHKLVKHSNDDGYLVG-SRGSVGSSFVATMSDITEVNPLPPHYVCPSCCHSEFFTD 676

Query: 400  -------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                      ++ F  FL  +   +PD D++F  +   +  +Y 
Sbjct: 677  GSVAGGFDLPDKNCPECGTPMKKDGHNIPFAIFLGFEGDKVPDIDLNFSGEYHPKAHKYT 736

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            +  +G + V +  T G++Q K A   V +                               
Sbjct: 737  EELFGKDNVFRAGTIGAVQDKTAYGYVKK------------------------------- 765

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMYRDVRS- 551
               + EAR    +   +  +     G+      H  G+++  R +      P+       
Sbjct: 766  ---WAEARGITANDAYINSLVNGCTGIKNTTGQHPGGVMVIPRDIDVHHFTPVQYPANKK 822

Query: 552  --DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET- 608
               +  T F+   IE   L+K D LG    T+++   D    +   +           + 
Sbjct: 823  DCGIITTHFDYHSIE-GRLVKLDILGHDDPTVIRMLEDMTGVKATTIPFDDQKTMSLFSS 881

Query: 609  --------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
                      L +  G+LGI +  +S +R+ L    P     ++ +              
Sbjct: 882  TEALGLTPEELGSPVGSLGIPEFGTSFVRKMLVDTMPKTFSGLVRISGFSHG-------T 934

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
                 N +E I S    ++  +     ++ Y   +    +  + + + E     + + K 
Sbjct: 935  DVWLNNAQELITSGKVQLNEAVSTRDDIMNYL--INHGIKPKTSFKVMENVRKGKGIDKP 992

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
             K    K    +     K  I +    +  ++      Y F ++HA AY +++++ AW K
Sbjct: 993  DKATGKK-TTDYEGELRKGHIPEWFIQSCLKI-----GYLFPRAHAVAYVMMAFRIAWYK 1046

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQ--------------------------------- 807
             +YP+ + AA  T+                                              
Sbjct: 1047 INYPLAYYAAYFTIRAKAFSIPMMIHGLDTARQAMKMITAKGDGASKIEKDLYSTLELVV 1106

Query: 808  DARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            +     I  M   +N      F + D +I     A+ G+G   A  I+E    + + S E
Sbjct: 1107 EMNLRGISFMNIDINKSEATKFTIHDGKILLPFTALDGLGKNVAEQIVEGRKSQAYTSKE 1166

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCF 894
            D   R    K+ + +++SL   G L   
Sbjct: 1167 DLKYR---GKVGQTLIDSLAEMGCLGEL 1191


>gi|157284469|gb|ABV31082.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
 gi|157284471|gb|ABV31083.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
 gi|157284475|gb|ABV31085.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
 gi|157284477|gb|ABV31086.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
 gi|157284481|gb|ABV31088.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
          Length = 339

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 125/355 (35%), Positives = 189/355 (53%), Gaps = 21/355 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ A
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVA 339


>gi|223036058|gb|ACM78682.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 124/352 (35%), Positives = 186/352 (52%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I   WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKEWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036338|gb|ACM78822.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 124/352 (35%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAKKYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036206|gb|ACM78756.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036360|gb|ACM78833.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  268 bits (685), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 125/352 (35%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   GI+PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGIKPIIGADFTL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|157284473|gb|ABV31084.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
          Length = 339

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 125/355 (35%), Positives = 189/355 (53%), Gaps = 21/355 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDDLT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGHTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ A
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVA 339


>gi|298500381|ref|ZP_07010186.1| DNA polymerase III [Vibrio cholerae MAK 757]
 gi|297541074|gb|EFH77128.1| DNA polymerase III [Vibrio cholerae MAK 757]
          Length = 278

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 76/245 (31%), Positives = 122/245 (49%), Gaps = 3/245 (1%)

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTT 849
             MT +MDN EK+     + +   + ++PP +N+    F V DN  I Y + AIKGVG   
Sbjct: 3    VMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKGVGEGP 62

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
               I+EA      F  L DFC+R+D KK+N+RV+E L+ AGALD  G  R  ++ S+D+ 
Sbjct: 63   IEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMASVDDA 122

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
             + A    +       ++F        + +    +       VR E E+  LG Y +GHP
Sbjct: 123  VRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLYLTGHP 182

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            +D Y   L K       E+  T R  ++ +A +V++ +   T++G+RIG +T  + +   
Sbjct: 183  VDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDDRSGRM 242

Query: 1028 EANFF 1032
            E   +
Sbjct: 243  EVMLY 247


>gi|218248458|ref|YP_002373829.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 8801]
 gi|218168936|gb|ACK67673.1| DNA-directed DNA polymerase [Cyanothece sp. PCC 8801]
          Length = 448

 Score =  267 bits (683), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 85/288 (29%), Positives = 143/288 (49%), Gaps = 11/288 (3%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   DN +K++K+ ++ ++  I+
Sbjct: 33   IASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDNQDKVEKYRENCQKMGIE 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874
            + PP +N     F      I + L+A+K +G     +I++A  D   F SL DFCSRVD 
Sbjct: 93   VEPPDINRSQKHFTPVGEHILFGLSAVKNLGEGAIDNILKAREDEGNFTSLADFCSRVDL 152

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------- 927
            + +N+R LE+L++ GA D    +R QL+  ++ +  +AQ   K + +   N+F       
Sbjct: 153  RVVNKRALETLIYCGAFDKVQNNRKQLINDIELVTAWAQKRAKEKESGQLNLFDLVGNST 212

Query: 928  ---AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                     F    +    +      R + E+  LGFY S HPL   K     +      
Sbjct: 213  SQNGASNSDFEQAPSSPAVADFPLPERLKLEKEHLGFYVSEHPLKSIKKAAAILSPINLS 272

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            E         I    MV + ++  T++G  + ++T  + + + EA  F
Sbjct: 273  ELEEQKSKQKISAVVMVNTIKKIVTKQGKNMAFLTLEDISGQLEAVVF 320


>gi|158333930|ref|YP_001515102.1| DNA polymerase III subunit alpha [Acaryochloris marina MBIC11017]
 gi|158304171|gb|ABW25788.1| DNA polymerase III alpha subunit, putative [Acaryochloris marina
            MBIC11017]
          Length = 446

 Score =  267 bits (682), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 89/294 (30%), Positives = 142/294 (48%), Gaps = 7/294 (2%)

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
             N        A   FNKSH+ AY  ++YQTA++K +YPVE++AA +T    + +K++K+ 
Sbjct: 24   HNFVMANGWVAANCFNKSHSTAYGYVTYQTAYLKANYPVEYMAALLTANSGDQDKVQKYI 83

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865
              A    I++ PP +N   VDF   D  I + L+A++ +G      I+ A   D  F+SL
Sbjct: 84   ATALSMGIEVEPPDINRSGVDFTPLDKNILFGLSAVRNLGQGAIEAILAARDEDGGFESL 143

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             + C RVD + +NRR LE+L+++GALD F  +R QL+  L+ I ++AQ   K+R     N
Sbjct: 144  AELCDRVDPRVVNRRALEALIYSGALDAFDTNRNQLVHDLELILEWAQSRAKDRAIGQGN 203

Query: 926  IF------AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
            +F           +       E       S + + E+ +LGFY S HPL   +   R M 
Sbjct: 204  LFDIMGGEGDAPTSLETAPKAEPVEDFQESEKLKLEKEILGFYISNHPLREIERPARLMA 263

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                           +    ++   +   T+KG R+  V   + + + E   FP
Sbjct: 264  PISLANLEEQPEKTTVSAIVLLTEVKPIITKKGDRMAIVQMEDLSGKAEGVVFP 317


>gi|257061525|ref|YP_003139413.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 8802]
 gi|256591691|gb|ACV02578.1| nucleic acid binding OB-fold tRNA/helicase-type [Cyanothece sp. PCC
            8802]
          Length = 448

 Score =  267 bits (682), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 85/288 (29%), Positives = 143/288 (49%), Gaps = 11/288 (3%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   DN +K++K+ ++ ++  I+
Sbjct: 33   IASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDNQDKVEKYRENCQKMGIE 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874
            + PP +N     F      I + L+A+K +G     +I++A  D   F SL DFCSRVD 
Sbjct: 93   VEPPDINRSQKHFTPIGEHILFGLSAVKNLGEGAIDNILKAREDEGDFTSLADFCSRVDL 152

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF------- 927
            + +N+R LE+L++ GA D    +R QL+  ++ +  +AQ   K + +   N+F       
Sbjct: 153  RVVNKRALETLIYCGAFDKVQNNRKQLINDIELVTAWAQKRAKEKESGQLNLFDLVGNST 212

Query: 928  ---AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                     F    +    +      R + E+  LGFY S HPL   K     +      
Sbjct: 213  SQNGASNSDFEQAPSSPAVADFPLPERLKLEKEHLGFYVSEHPLKSIKKAAAILSPINLS 272

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            E         I    MV + ++  T++G  + ++T  + + + EA  F
Sbjct: 273  ELEEQKSKQKISAVVMVNTIKKIVTKQGKNMAFLTLEDISGQLEAVVF 320


>gi|223036100|gb|ACM78703.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036256|gb|ACM78781.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036272|gb|ACM78789.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036294|gb|ACM78800.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036344|gb|ACM78825.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036346|gb|ACM78826.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036350|gb|ACM78828.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  267 bits (682), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 124/352 (35%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPDVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223035960|gb|ACM78633.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
 gi|223035964|gb|ACM78635.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035966|gb|ACM78636.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035976|gb|ACM78641.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035978|gb|ACM78642.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035982|gb|ACM78644.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035984|gb|ACM78645.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035986|gb|ACM78646.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035990|gb|ACM78648.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035998|gb|ACM78652.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036002|gb|ACM78654.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O139]
 gi|223036004|gb|ACM78655.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
 gi|223036006|gb|ACM78656.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O395]
 gi|223036008|gb|ACM78657.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036010|gb|ACM78658.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036012|gb|ACM78659.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036016|gb|ACM78661.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036018|gb|ACM78662.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036022|gb|ACM78664.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036024|gb|ACM78665.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036028|gb|ACM78667.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036040|gb|ACM78673.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036042|gb|ACM78674.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036046|gb|ACM78676.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036048|gb|ACM78677.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036050|gb|ACM78678.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036054|gb|ACM78680.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036060|gb|ACM78683.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036062|gb|ACM78684.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036064|gb|ACM78685.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036070|gb|ACM78688.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036076|gb|ACM78691.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036078|gb|ACM78692.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036086|gb|ACM78696.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036088|gb|ACM78697.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036092|gb|ACM78699.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036094|gb|ACM78700.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036102|gb|ACM78704.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036108|gb|ACM78707.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036112|gb|ACM78709.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036116|gb|ACM78711.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036118|gb|ACM78712.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036120|gb|ACM78713.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036122|gb|ACM78714.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036126|gb|ACM78716.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036128|gb|ACM78717.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036130|gb|ACM78718.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036132|gb|ACM78719.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036134|gb|ACM78720.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036136|gb|ACM78721.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036140|gb|ACM78723.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036142|gb|ACM78724.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036144|gb|ACM78725.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036146|gb|ACM78726.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036154|gb|ACM78730.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036158|gb|ACM78732.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036160|gb|ACM78733.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036162|gb|ACM78734.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036164|gb|ACM78735.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036166|gb|ACM78736.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036168|gb|ACM78737.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036172|gb|ACM78739.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036174|gb|ACM78740.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036176|gb|ACM78741.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036178|gb|ACM78742.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036180|gb|ACM78743.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036182|gb|ACM78744.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036184|gb|ACM78745.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036190|gb|ACM78748.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036192|gb|ACM78749.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036194|gb|ACM78750.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036196|gb|ACM78751.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036198|gb|ACM78752.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036200|gb|ACM78753.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036202|gb|ACM78754.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036204|gb|ACM78755.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036208|gb|ACM78757.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036210|gb|ACM78758.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036212|gb|ACM78759.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036216|gb|ACM78761.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036218|gb|ACM78762.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036222|gb|ACM78764.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036226|gb|ACM78766.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036228|gb|ACM78767.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036230|gb|ACM78768.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036236|gb|ACM78771.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036240|gb|ACM78773.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036242|gb|ACM78774.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036244|gb|ACM78775.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036252|gb|ACM78779.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036254|gb|ACM78780.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036258|gb|ACM78782.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036260|gb|ACM78783.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036262|gb|ACM78784.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036264|gb|ACM78785.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036266|gb|ACM78786.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036268|gb|ACM78787.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036270|gb|ACM78788.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036278|gb|ACM78792.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036282|gb|ACM78794.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036290|gb|ACM78798.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036296|gb|ACM78801.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036298|gb|ACM78802.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036300|gb|ACM78803.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036304|gb|ACM78805.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036306|gb|ACM78806.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036308|gb|ACM78807.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036310|gb|ACM78808.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036312|gb|ACM78809.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036314|gb|ACM78810.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036316|gb|ACM78811.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036318|gb|ACM78812.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036320|gb|ACM78813.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036324|gb|ACM78815.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036326|gb|ACM78816.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036334|gb|ACM78820.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036354|gb|ACM78830.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036358|gb|ACM78832.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036364|gb|ACM78835.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036366|gb|ACM78836.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036368|gb|ACM78837.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036370|gb|ACM78838.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036378|gb|ACM78842.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  267 bits (682), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 124/352 (35%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036148|gb|ACM78727.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  267 bits (682), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 123/352 (34%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++E+ +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEDSFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036072|gb|ACM78689.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036074|gb|ACM78690.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  267 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 123/352 (34%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG +G + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKNGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|32526639|dbj|BAC79179.1| putative DNA polymerase III, alpha chain [Streptomyces
           violaceoruber]
          Length = 382

 Score =  267 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 170/375 (45%), Gaps = 31/375 (8%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG- 66
           + SFVHL  H+ YS+L+GA  L  +  ++     PA+A++D  N+F A EF Q A   G 
Sbjct: 15  ADSFVHLHNHTEYSMLDGAQKLKPMFAEVDRQGMPAVAMSDHGNMFGAYEFQQVAKGFGS 74

Query: 67  IQPIIGCQLDIDMQDNLKMTN------------------QGKTPFPTVPSIVLLVSTAEG 108
           ++PIIG +  +                            +  +       + +  + A+G
Sbjct: 75  VKPIIGIEAYVAPSSRRNRRQEFWGPGGQRAVSDDGEGSKDVSGGGRFTHMTMWATGAQG 134

Query: 109 YQRLIELVSRMYLLDQGK-QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            + L  + +      Q      R+ +  + E   EG++  TG  SG +      N    A
Sbjct: 135 LRNLFYMSTEASYTGQFPAGKPRMDMELIAE-HAEGVVATTGCPSGAVQTRLRLNQYDEA 193

Query: 168 EKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
            +    ++ +FG +  ++ L  H    +R     +++LA    LPL+ATN++ ++ E   
Sbjct: 194 RQVASAYQDIFGKENYFLELMDHGLSIERDVREGLLRLARELSLPLLATNDAHYIHESQA 253

Query: 226 EAHDVLMAVAHSTVVSQKDRPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
           +AHD L+ +      + + R R +   +YLK  +EM ++F++LPEA +NT+ IA R    
Sbjct: 254 DAHDNLLCIGVGKNKADEKRFRFSGSGYYLKTAAEMRALFAELPEACDNTLLIAERVGSY 313

Query: 285 LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            +V   +       +  D  + +E+ LR + + GL +R             +  +R + E
Sbjct: 314 DEVFDNVDEMPQFPDVPD-GETQESWLRKEVLTGLAMRYGDPV------PTEVLERFETE 366

Query: 345 LNVIARMKFSGYFLI 359
           ++VI  M FS YFL+
Sbjct: 367 MSVIGPMGFSSYFLV 381


>gi|223035972|gb|ACM78639.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036044|gb|ACM78675.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036066|gb|ACM78686.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036068|gb|ACM78687.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036104|gb|ACM78705.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036110|gb|ACM78708.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036138|gb|ACM78722.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036156|gb|ACM78731.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036214|gb|ACM78760.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036246|gb|ACM78776.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036248|gb|ACM78777.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036280|gb|ACM78793.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036330|gb|ACM78818.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036376|gb|ACM78841.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  267 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 124/352 (35%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|76798876|ref|ZP_00781084.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae 18RS21]
 gi|76585772|gb|EAO62322.1| DNA polymerase III, alpha subunit [Streptococcus agalactiae 18RS21]
          Length = 620

 Score =  267 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 171/538 (31%), Positives = 274/538 (50%), Gaps = 31/538 (5%)

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
            FR+   +     +  +I++++EG  R  S HAAG+V+ D  L+  +P+      D+ +TQ
Sbjct: 4    FRQIIDSKIEYQKAYDIAKRIEGNPRQTSIHAAGVVMSDDLLTDHIPLKNG--EDMMITQ 61

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKS-LDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
            ++   +E  GL+K DFLGL+ LT +QK         G+ + L  I  +D ET  L     
Sbjct: 62   YDASSVEDNGLLKMDFLGLRNLTFVQKMKEKVDKDYGISIQLETIDLEDKETLKLFAAGQ 121

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            T GIFQ E SG    L  ++P+C ED++A  SL RPG  D    + NR+ GKEKI  + P
Sbjct: 122  TKGIFQFEQSGAINLLRRIRPECFEDVVATTSLNRPGASDYTENFINRRFGKEKIDLVDP 181

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
            +I P+L+ T G+++YQEQVMQIAQ  +G++L ++D+LRRAM KK  +EM K  + F+ GA
Sbjct: 182  VIAPILQPTYGIMLYQEQVMQIAQTYAGFTLGKSDLLRRAMSKKNSKEMQKMSQSFLEGA 241

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
               G  +  A  IFE +AKFA YGFN+SHA AY+ +++Q A+ K HY   F    +    
Sbjct: 242  VSKGHRQEDARLIFERMAKFAGYGFNRSHAFAYSALAFQLAYFKAHYSDVFYDIMINYSN 301

Query: 797  DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
             +      +  DA  F   I  PS+NT     ++   +IY  L  IKGV    A  I   
Sbjct: 302  SD------YLIDAIDFGFVIEKPSINTISYRDRIYKKKIYLGLKNIKGVPNDLAYWI--- 352

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
            S ++PF S+EDF  R+  +      +  L+  GA D F  +R ++  +LD++  +   + 
Sbjct: 353  SKNQPFQSIEDFLMRLPQQFQKSGFISPLIAIGAFDEFDNNRRKITSNLDSLFTFVNEL- 411

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                    ++FA     +       +    ++S ++E EQ +LG   S HPL      + 
Sbjct: 412  -------GSLFADTSYHWL------EVEDFSNSEKYEMEQDILGVGISPHPLVG----IS 454

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEANFFP 1033
            +   + +         +   +   +   +  +T+  G ++ ++T  +   + +   FP
Sbjct: 455  QKASRPFIPISQVQENSEATILVQLKQVKVIRTKSSGQQMAFLTVMDINSKMDITVFP 512


>gi|223036020|gb|ACM78663.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036186|gb|ACM78746.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036234|gb|ACM78770.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036302|gb|ACM78804.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036352|gb|ACM78829.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  267 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 124/352 (35%), Positives = 186/352 (52%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y  RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDDRLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036284|gb|ACM78795.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036286|gb|ACM78796.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036288|gb|ACM78797.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  267 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 124/352 (35%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNIGYKNLTLLISKAYLRGHVQHQPVIDKTWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223035968|gb|ACM78637.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036340|gb|ACM78823.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 124/352 (35%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEELFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036188|gb|ACM78747.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 124/352 (35%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHDCGVKPIIGADFTL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCVEFYQTHFADHFYLELIRTGRADEEXYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEEXFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|227824506|ref|ZP_03989338.1| DNA polymerase III [Acidaminococcus sp. D21]
 gi|226905005|gb|EEH90923.1| DNA polymerase III [Acidaminococcus sp. D21]
          Length = 1210

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 173/996 (17%), Positives = 330/996 (33%), Gaps = 207/996 (20%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-SQKACA-AGIQP 69
            + L  H+  S ++G   +  ++D  A     A+AITD   +  A  F   +A      + 
Sbjct: 300  IELHCHTKMSKMDGLTPIEELVDTAAKWGHKALAITDHGVVQ-AYPFAYDEAVKFKDFKL 358

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL--DQGKQ 127
            I G +  +                     I+LL  +  G + L  LVS  +L       +
Sbjct: 359  IFGVEGYLCHS----------KEDKKNYHIILLAKSFAGLRNLYRLVSLSHLQYFGGKPK 408

Query: 128  SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFKKLFGDRLYVNL 186
              R+    +++   + +I+ +  ++G + RA     S +   +    +        Y+ +
Sbjct: 409  RPRMTKGLIEQY-RDDIIIGSACAAGEVYRAILSGASHEELLQIADFYD-------YLEI 460

Query: 187  Q------------RHRGYD-----RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            Q            R+   +     +    +++ L       +VAT +  FL+ ED  A  
Sbjct: 461  QPCGNNQYLLRDDRYPEINTWEDLQTINKKILALGDELGKLVVATCDVHFLNPEDAIARR 520

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
            +L A      +   D  +                +     A E  VE   + + +++   
Sbjct: 521  ILQAG-----MGYPDEEQPPLYLRTTEEMLEEFSYLGKERAYEVVVENTNKINDMIEKFK 575

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
            P+  R        +    + ++ + +                   +    RL  EL+ I 
Sbjct: 576  PVPDRDQL--YSPMIPGAKEKVESMSYGRAHEWYGP------KLPKIVEDRLKLELSSII 627

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------- 399
               FS  + I    ++ +  +   VG  RGS   S  A  L IT+++PL           
Sbjct: 628  GNGFSVLYYIAHLLVKKSNDDGYMVG-SRGSVGSSFVATMLNITEVNPLPPHYRCPHCYH 686

Query: 400  -------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                                            ++ F  FL      +PD D++F  + + 
Sbjct: 687  TEWFTDGSVGSGFDLADKACPECGTMMVKDGHNIPFAVFLGFHGDKVPDIDLNFSGEYQP 746

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
               +Y ++ +G + V +  T G++  K A   + +  +              N+P     
Sbjct: 747  RAHKYTEDLFGRDNVFRAGTLGTIADKTAYGYIKKYYE------------NRNEPKRTAF 794

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMY 546
            ++ +                        KL G+ R    H AGI++  R L    L P+ 
Sbjct: 795  IEGLIP----------------------KLVGVKRTTGQHPAGIMVVPRDLDVHYLTPVS 832

Query: 547  RDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
                        T ++   I    ++K D LG    T+++  LD +   G   ++ +   
Sbjct: 833  YPADDPTCGTITTHYDYHSIND-RIVKLDILGHDDPTMIR-MLDNMLGEGYCKNIPVGDP 890

Query: 604  DDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            D  E +            ++T   T G+ +  +  +RQ +  ++P    D++ +      
Sbjct: 891  DTMELFLSTKSIGVSPEDIMTDVATYGVPECGTRFVRQMISDVKPKNFSDLLRISGYSH- 949

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                   V+ N              +      T+  I  ++ +M       G   S A  
Sbjct: 950  ----GTDVWLNNAQ----------DLIKNGTPTEDTISTRDDIMNWLIN-KGMEPSMAFG 994

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   M    K +  KQ  +      +    K      +    K   Y F K+HA AY + 
Sbjct: 995  I---MEWARKGKAHKQGFKAEQ---EEAFKKANIPEFYIKSCKTLQYLFPKAHAVAYVLS 1048

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC-------------------------- 806
            +Y+ A+ K H+P EF +A  T+     + ++                             
Sbjct: 1049 AYRIAYCKVHHPKEFYSAYFTIRAPKFDFVEVHKGINFMRSFIKNVGQQGTKASVNDKET 1108

Query: 807  QDARQFNIQIMPPSVNTPCVD--------FKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                +  ++++        VD        F V D  +   L AI G+G   A +I++A +
Sbjct: 1109 ATYMELAVEMLARGFEFEDVDLYRSDAHQFIVTDKGLLPPLGAIGGIGGVAAENIVKARS 1168

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              PF S ED  +R    K++   +E L   G L+  
Sbjct: 1169 KGPFISREDLRNRA---KISNTAVEVLADLGVLEGL 1201


>gi|223035980|gb|ACM78643.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036052|gb|ACM78679.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036342|gb|ACM78824.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036356|gb|ACM78831.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 124/352 (35%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHIQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036220|gb|ACM78763.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036232|gb|ACM78769.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036238|gb|ACM78772.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036250|gb|ACM78778.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036292|gb|ACM78799.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036322|gb|ACM78814.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036328|gb|ACM78817.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036348|gb|ACM78827.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 124/352 (35%), Positives = 186/352 (52%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL++  EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEVEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|67920557|ref|ZP_00514077.1| Protein splicing (intein) site [Crocosphaera watsonii WH 8501]
 gi|67858041|gb|EAM53280.1| Protein splicing (intein) site [Crocosphaera watsonii WH 8501]
          Length = 450

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/290 (28%), Positives = 146/290 (50%), Gaps = 12/290 (4%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   D+ +K++K+ ++ ++  I 
Sbjct: 33   IASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDSQDKVEKYRENCQKMGID 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVD 873
            ++PP +N    DF   D +I + L+A++ +G     +I++A  +    F SL DFC RVD
Sbjct: 93   VLPPDINLSKKDFTPIDKQILFGLSAVRNLGEGAIENILKAREEEEGGFKSLADFCCRVD 152

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----- 928
             + +N+R LE+L++AGA D    +R QL+  L+ +  +AQ   K + +   N+F      
Sbjct: 153  LRSVNKRALETLIYAGAFDALNANRQQLINDLELVIPWAQKRTKEKESGQLNLFDLVSDN 212

Query: 929  -----HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                   K  F    +       +   +   E+  LGFY S HPL   K   + +     
Sbjct: 213  NGETTESKNDFQQAPSTSPVEAYSLQDKLRLEKEHLGFYVSEHPLTALKKAAKLLSPINL 272

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             E     +   +    MV   +Q  T+KG  + ++   + + + +   FP
Sbjct: 273  NEIAEQKKNTKVSAVIMVNEVKQYTTKKGDPMAFLVLEDGSAQVKGVCFP 322


>gi|75909952|ref|YP_324248.1| DNA polymerase III subunit alpha [Anabaena variabilis ATCC 29413]
 gi|75703677|gb|ABA23353.1| intein / DNA polymerase III, alpha subunit [Anabaena variabilis ATCC
            29413]
          Length = 450

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 85/290 (29%), Positives = 140/290 (48%), Gaps = 12/290 (4%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AY  ++YQTA++K +YP+E++AA +T   ++ +K++K+       NIQ
Sbjct: 33   IASNCFNKSHSTAYGYVTYQTAYLKANYPLEYMAALLTANSNDTDKVQKYISTCLSMNIQ 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874
            I PP +N   VDF     +I +  +A++ VG      ++EA      F SL DFC RVD 
Sbjct: 93   IEPPDINRSGVDFTPVAGKILFGFSAVRNVGQNAIASVLEARETTGEFKSLADFCDRVDL 152

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-- 932
            + +NRR LESL++ GA D    +R QL+Q L+ +  +AQ   ++R +   N+F    G  
Sbjct: 153  RAVNRRTLESLIYCGAFDKIEANRHQLIQDLELVYDWAQSRARDRASGQGNLFDLLGGYS 212

Query: 933  ---------TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                      F      +         +   E+ +LGFY S HPL   + +   +     
Sbjct: 213  STSTKTANNAFETAPKAKPVLDYPPQEKLRLEKELLGFYVSDHPLKSLRSVAPLLTPINL 272

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +         + +  M+   ++  T+KG  +  +   +   + EA  FP
Sbjct: 273  SQLGEQREDTRLCVIVMLNGVKKVMTKKGDAMAILQLEDLTSQSEAVVFP 322


>gi|223036080|gb|ACM78693.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036082|gb|ACM78694.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036084|gb|ACM78695.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 124/352 (35%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRSEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036038|gb|ACM78672.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036170|gb|ACM78738.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 124/352 (35%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAELYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPDVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|312271562|gb|ADQ56136.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. HB0308-1A5]
          Length = 336

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 128/352 (36%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   GI+PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGIKPIIGADFML----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    +  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNIGYKNLTLLISKAYLRGHVQHQPVLDKAWLIE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  EK L  ++  F D  Y+ L R    D        ++LA  +ELP+VATN 
Sbjct: 110 ALLKGNQQQVEKCLEFYQTHFADHFYLELIRTGRADEESYLHFALELAELYELPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL+  +EM  +F+D+PEALEN+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRTEAEMCELFADIPEALENSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE---VRLAQGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE     L      +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTEGMAIEDFLVMKSREGLEDRLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036224|gb|ACM78765.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036336|gb|ACM78821.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 123/352 (34%), Positives = 186/352 (52%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG  G + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKRGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036150|gb|ACM78728.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 124/352 (35%), Positives = 186/352 (52%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNIGYKNLTLLISKAYLRGHVQHQPVIDKTWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL++  EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEVEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036036|gb|ACM78671.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 123/352 (34%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F +  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFAEHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223035970|gb|ACM78638.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035974|gb|ACM78640.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223035988|gb|ACM78647.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036030|gb|ACM78668.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036152|gb|ACM78729.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036274|gb|ACM78790.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036276|gb|ACM78791.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036362|gb|ACM78834.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036372|gb|ACM78839.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036374|gb|ACM78840.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 123/352 (34%), Positives = 186/352 (52%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG  G + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKRGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036056|gb|ACM78681.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 124/352 (35%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLYFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223035962|gb|ACM78634.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 123/352 (34%), Positives = 186/352 (52%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++E  +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEGSFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|223036014|gb|ACM78660.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|223036332|gb|ACM78819.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 336

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 124/352 (35%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFIL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|255994884|ref|ZP_05428019.1| DNA polymerase III, alpha subunit [Eubacterium saphenum ATCC 49989]
 gi|255993597|gb|EEU03686.1| DNA polymerase III, alpha subunit [Eubacterium saphenum ATCC 49989]
          Length = 1229

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 161/974 (16%), Positives = 321/974 (32%), Gaps = 195/974 (20%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC--AAGIQP 69
            V L  H+  S ++G  ++  ++   A+     IAITD   + +  E    A      I+ 
Sbjct: 317  VELHAHTKMSAMDGISNVTELVKTAASFGHKRIAITDHGVVQAFPEAMAAAKSCEEDIKI 376

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I G +  +   +        K        I++L  T EG + L +LVS  ++ +   +  
Sbjct: 377  IYGLEGYMYDDERADYDPDSKK--QRTYHIIILAKTREGLKNLYKLVSHSHI-NDFYRKP 433

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFKKLFGDRLYVNLQR 188
            R+  S +++   EGLI+ +    G I   F  N      ++R   +        Y+ +Q 
Sbjct: 434  RLARSVIRKY-REGLILGSACVVGEIYSGFLDNIDEAEMDERAKFYD-------YLEIQP 485

Query: 189  -----------------HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL 231
                             +    +    +++ LA  ++ P+ AT +  ++ E D     +L
Sbjct: 486  IGNNSFLKTSERYPSVSNDDDLKEINKKIISLADKNDKPVCATCDLHYIEESDAIYRKIL 545

Query: 232  MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
            MA        + D                         A +  +      +  ++    +
Sbjct: 546  MA-GQGYDDLEGDEGLFFRTTEEMLGEFEYLGEE---LAKKVVINNTVMIADSIEDFDAV 601

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
                     ++  +   +  R K            A+       +   R+  EL+ I   
Sbjct: 602  PEGKYPPHIENADQILNDVCRKK----------MEALYGDNPPAEIEDRMHKELSSIIDN 651

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------ 399
             ++  ++     +  + ++   VG  RGS   S+ A    IT+++PLR            
Sbjct: 652  GYAVLYVAAMMLVNKSNEDGYIVG-SRGSVGSSLVAMLSGITEVNPLRPHYRCDECKYFE 710

Query: 400  -----------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
                                         F++ FE FL  D    PD D++F  + +   
Sbjct: 711  WGDDAEYDCGIDMPEKVCPDCNKPLKREGFTIPFETFLGFDGDKEPDIDLNFAGEYQASA 770

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
             +YV+  +G + V +  T  ++Q K A   V +                           
Sbjct: 771  HKYVEEIFGSDNVFRAGTVSTIQGKTAYGFVKK--------------------------- 803

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRD 548
             I + +R             +  +  K  G+ R    H  G++I   +  + +  P+ R 
Sbjct: 804  YIEETNRNANRHE-------VDRLVSKCTGVRRSTGQHPGGVIIVPTENSIYEFTPIQRP 856

Query: 549  VRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                  D+  T F+   IEK  L+K D LG +  ++++K         + + LS    D 
Sbjct: 857  ANDMKSDVITTHFDYHSIEK-NLLKLDILGHEAPSIIKKLEKITGVDPLAISLSDKDVDA 915

Query: 606  HET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
                           L   G+ GI +  +  +R  L  ++P    D++ +      G   
Sbjct: 916  IFNGVSTLGIEDDDYLFDGGSFGIPEFGTKLVRSMLTEVKPGRFADLLRISGFSH-GTGV 974

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
                       K   +             Q VI  ++ +M       G     +  +  A
Sbjct: 975  WQSNARELIKNKVASM-------------QDVISTRDDIMNYLIQ-KGLEPGLSFKIMEA 1020

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            + K      +++         + G  K    +  ++     +Y F ++HA AY +++Y+ 
Sbjct: 1021 VRKGRGLTPEQE-----KAMLEAGCPKWYIESCNKI-----EYMFPRAHAVAYVIMAYRI 1070

Query: 777  AWMKTHYPVEFLAASM----------------------------------TLEMDNVEKI 802
            A+ K ++P+ + A                                     T E D +  +
Sbjct: 1071 AYFKVNFPLHYYAVYFEKKIADFDLDMIAEGKEAVKKEIETLYKRQKLDTTKEEDRLTVL 1130

Query: 803  KKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
            +   +   +    I P    +    F +  N +   ++A+ GVG+  ++ I E      F
Sbjct: 1131 ELAYEMMARGFGFIRPILKKSKGRSFVIEGNDLIVPMSALNGVGSNASKKIDEELLKGDF 1190

Query: 863  DSLEDFCSRVDSKK 876
             S+++F +R     
Sbjct: 1191 SSIQEFSTRTGIGG 1204


>gi|223036096|gb|ACM78701.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. SA0605-25]
          Length = 336

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 122/352 (34%), Positives = 186/352 (52%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   GI+PIIG    +          Q       + 
Sbjct: 1   ALGMPAMALTDFTNLCGLVKFYGAAHGNGIKPIIGADFKM----------QSPEFGDDLT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + +L +   GY+ L  L+S+ YL    +    I   WL E+ +EGLI+L+G  +G I +
Sbjct: 51  QLTVLAADNTGYKNLTLLISKAYLRGHVQHQPVIDKEWLIEL-SEGLILLSGARNGEIGK 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + ++ E  +  +++ F DR Y+ L R    D        ++LA  ++LP+VATN 
Sbjct: 110 ALLKGNQKLVESCVAFYQQHFADRFYLELIRTGRSDEETYLHFAIELAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F+ +E ++AH++ +A+     +    RP+  +P  YL+   EM  +F+D+PEALEN+V
Sbjct: 170 VVFIGQELFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEEMCELFADIPEALENSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +           E   L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLWE-----YFLPAFPTEGMAETEFLVMKSKEGLEERLEFLFPDPEIRAQ 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGS 336


>gi|307152451|ref|YP_003887835.1| nucleic acid-binding OB-fold tRNA/helicase-type [Cyanothece sp. PCC
            7822]
 gi|306982679|gb|ADN14560.1| nucleic acid binding OB-fold tRNA/helicase-type [Cyanothece sp. PCC
            7822]
          Length = 452

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 85/290 (29%), Positives = 147/290 (50%), Gaps = 12/290 (4%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   D+ +K++K+ ++ ++  I 
Sbjct: 33   IASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDSQDKVEKYRENCKKMGID 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPFDSLEDFCSRVD 873
            + PP +N    DF     +I + L+A++ +G     +I++A  +    F+SL DFC RVD
Sbjct: 93   VEPPDINRSQKDFTPVGEKILFGLSAVRNLGENAIENILKAREEAKGKFESLADFCLRVD 152

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
             + +NRR LE+L++ GA D    +R QL+Q LD +  +AQ   K + +   ++F    G 
Sbjct: 153  LRVVNRRALETLIYCGAFDNINNNRNQLIQYLDIVIPWAQKRTKEKESGQLSLFDSLGGL 212

Query: 934  FSDK----------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
              D+           +L      +   + + E+  LGFY S HPL       + +     
Sbjct: 213  TVDEENSESKFDLVPSLPSVEPFSLDQKLKLEKEHLGFYVSEHPLQSIVEAAKFLSPINL 272

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             E         I    M+ S ++  T++G  + +V   + + + E   FP
Sbjct: 273  NELENQSTRKMISAVVMINSVKKITTKEGKPMAFVGLEDISGQVEGIVFP 322


>gi|223036098|gb|ACM78702.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. SA0605-34]
          Length = 336

 Score =  265 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 122/352 (34%), Positives = 186/352 (52%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   GI+PIIG    +          Q       + 
Sbjct: 1   ALGMPAMALTDFTNLCGLVKFYGAAHGNGIKPIIGADFKM----------QSPEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + +L +   GY+ L  L+S+ YL    +    I   WL E+ +EGLI+L+G  +G I +
Sbjct: 51  QLTVLAADNTGYKNLTLLISKAYLRGHVQHQPVIDKEWLIEL-SEGLILLSGARNGEIGK 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + ++ E  +  +++ F DR Y+ L R    D        ++LA  ++LP+VATN 
Sbjct: 110 ALLKGNQKLVESCVAFYQQHFADRFYLELIRTGRSDEETYLHFAIELAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F+ +E ++AH++ +A+     +    RP+  +P  YL+   EM  +F+D+PEALEN+V
Sbjct: 170 VVFIGQELFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEEMCELFADIPEALENSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +           E   L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLWE-----YFLPAFPTEGMAETEFLVMKSKEGLEERLEFLFPDPEIRAQ 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGS 336


>gi|330900334|gb|EGH31753.1| error-prone DNA polymerase [Pseudomonas syringae pv. japonica str.
            M301072PT]
          Length = 453

 Score =  265 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 104/420 (24%), Positives = 176/420 (41%), Gaps = 34/420 (8%)

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPML 682
            S      L  ++P+   D++  V++ RPGPI   +V+    R+NG+E +    P ++ + 
Sbjct: 1    SRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLRRRNGEEAVTYP-PKLESVF 59

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM-DKQKERFISGASKNGI 741
            K T GV ++QEQVM++A L + Y+  EAD LRRAM    +    +  +ER  +G  KNG 
Sbjct: 60   KRTLGVPLFQEQVMEVAILAADYTPGEADELRRAMAAWKRHGGLEPHRERLRTGMLKNGY 119

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
                A  IFE +  F  YGF +SHAA++A+++Y + W+K H P  F  A +         
Sbjct: 120  EADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEPAAFTCALINSWPMGFYS 179

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARH 852
              +  QDAR+ +I+I P  V     D  +          +  I   L  ++      A  
Sbjct: 180  PDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDRTRNLAIRLGLRMVRSFREEDALR 239

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            I  A A +PF    D   R +   L+ R  E+L  +GAL      R +    +  +    
Sbjct: 240  IEVARAKRPFVDATDLTLRAE---LDSRAAEALADSGALRGLIGHRHRARWEVAGV---- 292

Query: 913  QWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
                         +F       +  I      +   +     +   LG     HPL + +
Sbjct: 293  --------EAQRPLFDDLPSEETQVI----LPLPTVAEDLVADYTTLGTTLGPHPLALLR 340

Query: 973  PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              L     +  ++ +       + +A +V+ +Q+  T  G  + +VT  +         +
Sbjct: 341  RQLAAKRFRSSQDLLHLENDRTLSVAGLVIGRQRPGTASG--VTFVTLEDEFGMVNVVVW 398


>gi|157284479|gb|ABV31087.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
          Length = 339

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 124/355 (34%), Positives = 188/355 (52%), Gaps = 21/355 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     + 
Sbjct: 1   AMGLPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+   R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLEAIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ A
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVA 339


>gi|39939077|ref|NP_950843.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
 gi|39722186|dbj|BAD04676.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
          Length = 625

 Score =  264 bits (675), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 179/651 (27%), Positives = 310/651 (47%), Gaps = 41/651 (6%)

Query: 18  SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDI 77
           S YSLL+   SL  ++ K   +    +A++D +NL+    F +      I+ I+G +++ 
Sbjct: 9   SFYSLLQSLNSLETLVQKAKENDYDFVALSD-DNLYGMPTFLKLCHNYQIKSILGLKINF 67

Query: 78  DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
             ++ L               +++     +G + LI++ + +   +    + +I L+ + 
Sbjct: 68  LHKNQLAT-------------LLIYAKNDQGIKNLIQISTIIKNEE----TPQITLNQIA 110

Query: 138 EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE 197
            +G + L  L  G +   D  FF +      +     +K+F D L + +     +     
Sbjct: 111 HLGKD-LFALIPGENPFFDDMFFRDQKDKFFQIANQLQKIF-DELVLGISYQNSFLELLS 168

Query: 198 SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
             ++  A   ++P V  N + + + +    + +L  + +     Q D   +T D+     
Sbjct: 169 ENIIDFANHFQIPYVPINKTCYDTFQAQPTYQILAQMENKKNDDQTDLSFLTKDN---FD 225

Query: 258 SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
           S   +       A    +  + +    L     +L           +   +  L+  +  
Sbjct: 226 SAYNAQTHKAMFAYLKKLIFSIKYQNYLP--QKMLLPSFVDFLQPQKITAKEYLKQISYE 283

Query: 318 GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
           GL   +             Y+QRLD EL +IA M++  YFLIV D +++AKK  I VGPG
Sbjct: 284 GLRQYIDFKNPKYT----KYQQRLDQELQIIADMEYDNYFLIVGDVVRYAKKQGILVGPG 339

Query: 378 RGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
           RGS +GS+  + L IT+IDPL++ L+FERFLNP R +MPD D+DF ++ RD +I+YV  K
Sbjct: 340 RGSSSGSLVCFCLQITEIDPLQYDLIFERFLNPQRKTMPDIDLDFPENTRDLIIQYVCQK 399

Query: 438 YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
           YG + VA IITFG   ++ A+ +          +      L   D       + +     
Sbjct: 400 YGTKHVASIITFGRFVSQKAIINELVKFMPTVKEFQTKRVLAYLDKKSTYQKETLDL--- 456

Query: 498 FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
                     + +LL ++  +EG+ R   TH AGI++   PL Q++P+ +   ++L  TQ
Sbjct: 457 ---------QMKKLLTMASYIEGIPRFTGTHPAGIILSQMPLDQIIPLQKGTHNNLQQTQ 507

Query: 558 FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGT 617
           +   ++E  GL+K DFLGL++LTL+ K +  + +      L  IP +D +T+ LL    T
Sbjct: 508 WEASFLESIGLLKIDFLGLRSLTLMNKMVLAIQKTNPHFGLFKIPLNDTKTFELLQQGKT 567

Query: 618 LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
           +GIFQLES   +  L+ M P   ED+IAL++L RPGPID+  ++   ++ K
Sbjct: 568 IGIFQLESYNAKIFLQKMMPQKFEDLIALLALNRPGPIDSFNMFLKNRHQK 618


>gi|17228549|ref|NP_485097.1| DNA polymerase III subunit alpha [Nostoc sp. PCC 7120]
 gi|17130400|dbj|BAB73011.1| DNA polymerase III alpha subunit [Nostoc sp. PCC 7120]
          Length = 450

 Score =  264 bits (674), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 84/290 (28%), Positives = 140/290 (48%), Gaps = 12/290 (4%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AY  ++YQTA++K +YP+E++AA +T   ++ +K++K+       NIQ
Sbjct: 33   IASNCFNKSHSTAYGYVTYQTAYLKANYPLEYMAALLTANSNDTDKVQKYISTCLSMNIQ 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874
            I PP +N   VDF     +I +  +A++ VG      ++EA      F SL DFC R+D 
Sbjct: 93   IEPPDINRSGVDFTPVAGKILFGFSAVRNVGQNAIASVLEARDTTGEFKSLADFCDRIDL 152

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-- 932
            + +NRR LESL++ GA D    +R QL+Q L+ +  +AQ   ++R +   N+F    G  
Sbjct: 153  RAVNRRTLESLIYCGAFDKIEANRHQLIQDLELVYDWAQSRARDRASGQGNLFDLLGGYS 212

Query: 933  ---------TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                      F      +         +   E+ +LGFY S HPL   + +   +     
Sbjct: 213  STNTKTANNAFETAPKAKPVLDYPPQEKLRLEKELLGFYVSDHPLKSLRSVAPLLTPINL 272

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +         + +  M+   ++  T+KG  +  +   +   + EA  FP
Sbjct: 273  SQLGEQREDTRLCVIVMLNGVKKVMTKKGDAMAILQLEDLTSQSEAVVFP 322


>gi|258645985|ref|ZP_05733454.1| DNA polymerase III, alpha subunit [Dialister invisus DSM 15470]
 gi|260403356|gb|EEW96903.1| DNA polymerase III, alpha subunit [Dialister invisus DSM 15470]
          Length = 1227

 Score =  264 bits (674), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 157/998 (15%), Positives = 314/998 (31%), Gaps = 218/998 (21%)

Query: 3    QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            + + ++P  V L +H+  S L+G +    I+   A  + PA+AITD   + +  +    A
Sbjct: 288  EDMAETPR-VELHLHTKMS-LDGLIDNEEIIRTAAKWKHPAVAITDHGVIQAFPQIQTLA 345

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               G + I G +  +  +    +     +       I+LL     G + L  LV+  +L 
Sbjct: 346  AKYGQKVIYGMEGYLIDE----VPEDIDSDRQQYSHIILLAKNITGLRNLYRLVTLSHLK 401

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
               ++   +    L+E   +GL+  +    G   RA     S     RL  F        
Sbjct: 402  -YYRKRPLLPRPLLEEF-RDGLMYGSACVMGEFFRAVLNGDSDEELIRLAKFYD------ 453

Query: 183  YVNLQRHRGYD-----------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
            Y+ +Q     +                 +    +V+++     +P+ AT+++ +L  E  
Sbjct: 454  YLEVQPLGNNEFLLYEDKYAAITTKKDLQELNKKVIEIGEKAGIPVCATSDAHYLFAEYA 513

Query: 226  EAHDVLM--AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
               D+L+        + S       T +  L+  S +    ++            +    
Sbjct: 514  RDRDILLSNWEKPGKIESHPPVYLRTTEEMLEEFSYLPKEKAEEIVITNTRRVAEQCEVI 573

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
                          K  +      +++L+            +         +  R RLD 
Sbjct: 574  EPLAEEW-------KSYNPKIAGADDKLKAMCYEKAVELYGEPL------PEIIRDRLDL 620

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---- 399
            EL  I    +   + I    ++ +      VG  RGS   S  A    IT+++PL     
Sbjct: 621  ELTPIINHGYGVLYYIAHKLVKHSNDRGYLVG-SRGSVGSSFVATLAGITEVNPLPPHYV 679

Query: 400  -------------------------------------FSLLFERFLNPDRMSMPDFDIDF 422
                                                  ++ F  FL  D   +PD D++F
Sbjct: 680  CPHCHWNQFFTDGSVGGGFDLADKKCPNCGTELNKDGHNIPFAVFLGFDGDKVPDIDLNF 739

Query: 423  CQ-DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
               D +    +Y +  +G + V +  T   +Q K A   V R  +               
Sbjct: 740  SSGDDQAVAHKYTEELFGRDNVFRAGTIAGIQDKTAFGFVKRYAE--------------- 784

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPL 539
                 ++   I                  + ++S  + G+ R    H AGI++      +
Sbjct: 785  --NRGLTFNDI-----------------FIEKLSAGVAGVKRTTGQHPAGIMVCPRDMDI 825

Query: 540  SQLVPMYRDVRSDL-----------PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
                P+                    +T           ++K D LG     +++     
Sbjct: 826  HNFTPLQYAANKRWLKDETGEKIPGTITTHFDYHSISGRMLKLDILGHDDPKVIR----- 880

Query: 589  LAQRGVKVDLSLIPFDDHETYHLLTTKGT---------------------LGIFQLESSG 627
            + Q    +D   IPF+D +T  L ++                        +G+ +  +  
Sbjct: 881  MLQDITGIDPLHIPFNDEKTLSLFSSPDALGITSEQLKAAVGDKGITVGAIGLPEFGTPF 940

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            +R  LE  +P    +++ +                   N ++ I S    ++  +     
Sbjct: 941  VRGMLEDTRPKNFSELVRISGFSHG-------TNVWLNNARDLITSGKVKLEEAISTRDD 993

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            ++ Y   +    + L+ + + E     + + K           + +  A          +
Sbjct: 994  IMNYL--IEHHVKPLTAFKVMENVRKGKGLEKGNSN-----NRKELEDARVPQWFIDSCL 1046

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL------------- 794
             I         Y F ++HA AY +++++ AW K + P+ + AA  T+             
Sbjct: 1047 KI--------SYLFPRAHAVAYVMMAFRIAWFKVYEPLAYYAAYFTIRAEGAFNAAVILR 1098

Query: 795  --------------------EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDN 833
                                       + +   +     ++ +P  +N     +F + D 
Sbjct: 1099 GLASQSAELARINSLPHPTAVEKGSATVIEAAAEMYLRGLKFLPIDLNKSSASEFLMEDG 1158

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
             +      I  +G T A+ I+EA  + PF S ED   R
Sbjct: 1159 ALRPPFNCIPALGNTVAKEIVEARREHPFTSKEDLKKR 1196


>gi|312271566|gb|ADQ56138.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. HB0308-1B5]
          Length = 336

 Score =  263 bits (673), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 126/352 (35%), Positives = 186/352 (52%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   GI+PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGIKPIIGADFML----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    +  +WL +   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNIGYKNLTLLISKAYLRGHVQHQPVLDKAWLID-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  EK L  ++  F D  Y+ L R    D        + +A  +ELP+VATN 
Sbjct: 110 ALLKGNQQQVEKCLEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYELPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL+  +EM  +F+D+PEALEN+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRTEAEMCELFADIPEALENSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE---VRLAQGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE     L      +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTEGMAIEDFLVMKSREGLEDRLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|157284483|gb|ABV31089.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O1]
          Length = 339

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 124/355 (34%), Positives = 188/355 (52%), Gaps = 21/355 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   G++P IG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPFIGADFTL----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN 
Sbjct: 110 ALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ A
Sbjct: 285 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVA 339


>gi|223036000|gb|ACM78653.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. L8M]
 gi|312271564|gb|ADQ56137.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. HB0308-2A5]
 gi|312271568|gb|ADQ56139.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. HB0308-1A6]
          Length = 336

 Score =  263 bits (671), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 127/352 (36%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           A   PA+A+TD  NL   ++F   A   GI+PIIG    +          Q +     + 
Sbjct: 1   AMGMPAMALTDFTNLCGLVKFYSTAHNCGIKPIIGADFML----------QSEEFGDELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL     GY+ L  L+S+ YL    +    +  +WL +  TEGLI+L+GG SG + R
Sbjct: 51  KLTLLAKNNIGYKNLTLLISKAYLRGHVQHQPVLDKAWLID-HTEGLIVLSGGKSGEVGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + Q  EK L  ++  F D  Y+ L R    D        + +A  +ELP+VATN 
Sbjct: 110 ALLKGNQQQVEKCLEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYELPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +F++EE +EAH++ +A+     +    RP+  +P  YL+  +EM  +F+D+PEALEN+V
Sbjct: 170 VVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRTEAEMCELFADIPEALENSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE---VRLAQGAIAKGY 332
           EIA+RC+  +++       +            E+ L  K+  GLE     L      +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPNFPTEGMAIEDFLVMKSREGLEDRLEFLFPDPEVRAQ 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 SRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|170078979|ref|YP_001735617.1| DNA polymerase III subunit alpha [Synechococcus sp. PCC 7002]
 gi|169886648|gb|ACB00362.1| DNA polymerase III alpha subunit [Synechococcus sp. PCC 7002]
          Length = 446

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 83/286 (29%), Positives = 144/286 (50%), Gaps = 12/286 (4%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +YPVE++ A ++    N +K++K+ ++A +  I 
Sbjct: 33   IAANCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLSASSGNKDKVRKYRENAERMGIL 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            ++PP +N   +DFK     I + L+A++ +G      I+ A    PF SL D CSR+D +
Sbjct: 93   VLPPDINESDLDFKPVGQGIRFGLSAVQNLGENAINAILAAREAGPFLSLSDLCSRLDLR 152

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF---AHEKG 932
             +NRR LE+L+  G LD    +R  +L+ LD +  +AQ   K + +   N+F        
Sbjct: 153  VVNRRALETLITCGGLDSLHDNRQAMLKGLDLMMDWAQLKAKEKASGQTNLFESLGDTAA 212

Query: 933  TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK----PILRKMGIKGYEESVA 988
             F +   L K +      +   E+ +LGFY S HPL+  +    PIL  + +        
Sbjct: 213  AFDEAPVLPKVADLTLEEKLRQEKELLGFYVSEHPLEKLRSTISPILSPISLTAIA---- 268

Query: 989  TIRGNNIRLAAMVVSKQQKKTR-KGSRIGWVTFSEPAKEYEANFFP 1033
                  +   A++   ++  T+     + ++   + + + E   FP
Sbjct: 269  NHINKKVSAVAILTDMRKIFTKANNEPMAFIQLEDISGQVEGIVFP 314


>gi|223036124|gb|ACM78715.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. SA0706-05S]
          Length = 336

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 124/352 (35%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
               PA+A+TD  NL   ++F   A  +G++PIIG    +          Q       + 
Sbjct: 1   ELGMPAMALTDFTNLCGLVKFYGTAHGSGVKPIIGADFKM----------QSDEFGEELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + +L +   GY+ L  L+S+ YL    +    I  +WL E+ +EGLI+L+G  +G I +
Sbjct: 51  QLTVLAADNAGYKNLTLLISKAYLRGHVQHQPVIDRAWLAEM-SEGLIVLSGAKNGDIGK 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + ++ E  +  +K+ F DR Y+ L R    D        + LA  H+LP+VATN 
Sbjct: 110 ALLKGNRKLVESCVEFYKQHFPDRFYLELIRTGRPDEETYLHFAIDLAEQHDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +FLS + ++AH++ +A+     +    RP+  +P  YL+   EM  +F+D+PEALEN+V
Sbjct: 170 VVFLSADLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEEMCELFADIPEALENSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +          EE   L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPAFPTEGMEETEFLVMKSREGLEERLEFLFPDEEERKK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGAGS 336


>gi|218680670|ref|ZP_03528567.1| DNA polymerase III, alpha subunit [Rhizobium etli CIAT 894]
          Length = 521

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 137/551 (24%), Positives = 224/551 (40%), Gaps = 56/551 (10%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-- 62
           ++  P+F  +   +++S LEGA S   ++ + A  +   + I D N++   +    +A  
Sbjct: 2   MKSEPAFFEIGARTNFSFLEGASSPEEMVVQAAHLRLGGLGIADRNSVAGVVRAHAQALQ 61

Query: 63  -------------------CAAGI-QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
                                  I  PI      I     L  +          P I+  
Sbjct: 62  LEERYRNRDAIMAQAEREGKKEKIVDPI-----RIQPGARLVFS-------DDTPDILAY 109

Query: 103 VSTAEGYQRLIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                G+  L  L+S   L ++  K    +  + L E G E ++ L    +    +A   
Sbjct: 110 PRNRRGWANLCRLLSAGNLKEEAVKGDCILTEAELMEWGDEMMLALVPDRTLVESKA--- 166

Query: 162 NSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFL 220
                 E  L  F++ FG   Y+ L   + G DR   + +  LA  + LPL+ATN  L+ 
Sbjct: 167 -GQSALENYLERFRRRFGKAFYMALAPAYDGRDRQVFAVLAMLAARNRLPLIATNQPLYH 225

Query: 221 SEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
             E     DV++A+     +           + YLK+  EM  IF D P A+ENT     
Sbjct: 226 HPERRPLSDVVIAIREHVEIAQAGFLLAPNAERYLKDSREMARIFRDYPAAIENTRAFFG 285

Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
           + SF L               +D  +  +  L      G   R  QG            +
Sbjct: 286 KLSFSLTELEHNY-----PPENDPGETPQETLERLTRTGAAKRYPQG------IPDKVAK 334

Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
           ++D+EL +I   K++ YFL V   I+ A+     +  GRGS A SV  Y L IT++DP +
Sbjct: 335 QIDYELKLIGEKKYASYFLTVHRIIRHARYELKVLCQGRGSAANSVICYCLEITEVDPQK 394

Query: 400 FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            +LLF+RF++ DR   PD D+DF  DRR+EVI+Y+   Y  E         + + ++A R
Sbjct: 395 STLLFDRFISMDRDEPPDIDVDFEHDRREEVIQYIYKTYTREHAGLTAGVTTYRTRSAGR 454

Query: 460 DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
           +V +A  +       +  L+       +S      D++     + DP    +L+ + +L 
Sbjct: 455 EVAKAFGLSEDVQSAISSLVWGWSEDNLS----ERDAKAAGLDIKDPVTRNVLKYASELL 510

Query: 520 GLYRHASTHAA 530
           G  RH + H  
Sbjct: 511 GFPRHLTQHVG 521


>gi|330971218|gb|EGH71284.1| error-prone DNA polymerase [Pseudomonas syringae pv. aceris str.
            M302273PT]
          Length = 437

 Score =  262 bits (669), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 97/404 (24%), Positives = 166/404 (41%), Gaps = 34/404 (8%)

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQVMQI 698
             D++  V++ RPGPI   +V+   +    +  +    P ++ + K T GV ++QEQVM++
Sbjct: 1    YDLVIEVAIVRPGPIQGDMVHPYLRRRNGEEDVTYP-PKLESVFKRTLGVPLFQEQVMEV 59

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFA 757
            A L + Y+  EAD LRRAM    +    +  +ER  +G  KNG     A  IFE +  F 
Sbjct: 60   AILAADYTPGEADELRRAMAAWKRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFG 119

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             YGF +SHAA++A+++Y + W+K H P  F  A +           +  QDAR+ +I+I 
Sbjct: 120  SYGFPESHAASFALLTYASCWLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIR 179

Query: 818  PPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
            P  V     D  +          +  I   L  ++      A  I  A A +PF    D 
Sbjct: 180  PVDVRYSDWDCSLEPLDHPDRTRNLAIRLGLRMVRSFREEDALRIEAARAKRPFVDATDL 239

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              R +   L+ R  E+L  +GAL      R +    +  +                 +F 
Sbjct: 240  TLRAE---LDSRAAEALADSGALRGLIGHRHRARWEVAGV------------EAQRPLFD 284

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
                  +  I      +   +     +   LG     HPL + +  L     +  ++ + 
Sbjct: 285  DLPSEETQVI----LPLPTVAEDLVADYTTLGTTLGPHPLALLRRQLAAKRFRSSQDLLH 340

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                  + +A +V+ +Q+  T  G  + +VT  +         +
Sbjct: 341  LENDRTLSVAGLVIGRQRPGTASG--VTFVTLEDEFGMVNVVVW 382


>gi|218514385|ref|ZP_03511225.1| DNA polymerase III subunit alpha [Rhizobium etli 8C-3]
          Length = 256

 Score =  262 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 129/224 (57%), Positives = 158/224 (70%), Gaps = 1/224 (0%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +P F+HL+VHS+YSLLEGAL L  I+ K A D QPAIAITDTNNLF ALEFSQKA   G+
Sbjct: 16  TPGFIHLRVHSAYSLLEGALPLKKIIYKAAGDNQPAIAITDTNNLFVALEFSQKAMDDGL 75

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKT-PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           QPIIGCQ+ IDM+D L+   +G       +PSIVLL +T  GY+RL++LVSR YL     
Sbjct: 76  QPIIGCQVSIDMEDGLETEKRGGQQALVKLPSIVLLAATEAGYERLVDLVSRAYLGGDSN 135

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
           Q++ I  SWL+E GTEGLI LTG  +GP+D A     +  AE RLL  K+LFGDRLYV L
Sbjct: 136 QAIHIRASWLEEAGTEGLIALTGALTGPVDAAIREGHTAQAEARLLMLKRLFGDRLYVEL 195

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
           QRH  YD+  E ++V LAY H+LPLVATN + F + +DY AH  
Sbjct: 196 QRHGTYDKPHEQKIVGLAYAHDLPLVATNEAFFPTRDDYHAHGC 239


>gi|254247147|ref|ZP_04940468.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184]
 gi|124871923|gb|EAY63639.1| DNA polymerase III alpha subunit [Burkholderia cenocepacia PC184]
          Length = 428

 Score =  262 bits (668), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 101/442 (22%), Positives = 177/442 (40%), Gaps = 27/442 (6%)

Query: 1   LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           +       P +  L   S++S L GA     ++++        IAITD  +L  A     
Sbjct: 1   MVAEFSLLPDYAELFCRSNFSFLHGASHAEELVERADELGYRGIAITDECSLAGAPRMHV 60

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            A   G+  +IG   D+   +       G  P P    +VLL    EGY  L EL+S   
Sbjct: 61  AAKEKGLPLVIGSYFDVTPDE----VAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-R 115

Query: 121 LLDQGKQSVRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
            ++  K + ++    L     +   L  +    +  +        + V + ++  F+  F
Sbjct: 116 RMEAPKGTYKLTSRILSAPPAKFAHLRGMPDCFAILVPTY--PVRADVLDAQVAWFRATF 173

Query: 179 GDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
           G+R  + L Q  R  D  +  ++        + LVA  +            DV+ A+   
Sbjct: 174 GERARLGLVQLQRALDGVQRDEIRAAGKRRGVRLVALGDVTMHVRSCKALQDVMTAIRVG 233

Query: 238 TVV-SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
             V           + +L++R  +  +FS   E +  T  +   C F L       P  +
Sbjct: 234 MPVAECGYALAPNAEQHLRSRGRIAKLFS--AEEIGETCAMLDACDFDLDDLKYEYPLEL 291

Query: 297 EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
                       + L+ +  AG+  R   G        +   +++ +EL +IA++++  +
Sbjct: 292 VPRG----HTPTSYLKQETWAGVARRYWNGV------PEKVAKQIRYELALIAKLEYEPF 341

Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
           FL V D +++A+  NI    GRGS A SV  Y L IT+++P + ++LFERF++  R   P
Sbjct: 342 FLTVYDIVKYARSQNIL-CQGRGSAANSVVCYCLGITEVNPDQSTMLFERFISEKRGEPP 400

Query: 417 DFDID---FCQDRRDEVIRYVQ 435
           D D+    F  D R   +    
Sbjct: 401 DIDVYRTLFSTDERHACLSAFC 422


>gi|329770059|ref|ZP_08261454.1| hypothetical protein HMPREF0433_01218 [Gemella sanguinis M325]
 gi|328837370|gb|EGF87000.1| hypothetical protein HMPREF0433_01218 [Gemella sanguinis M325]
          Length = 686

 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 223/726 (30%), Positives = 367/726 (50%), Gaps = 60/726 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           LQVHS+Y LL   +    +  K+  D Q ++ ITD   L+ A++  + A    +  + G 
Sbjct: 6   LQVHSAYDLLNSTIKYTELFSKLKKDGQDSVVITDP-TLYGAIKAYKIAKKFDVNLVHGL 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++ +    +    N             +L    E + RL+E+ +   + ++ + S+   +
Sbjct: 65  EIKLGYVISFLKFN-------------ILCKNTEMFYRLLEIST--MIENKVEWSIEKLV 109

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
             L++   + +I++       ID              L       G   Y       G++
Sbjct: 110 EELKKSKEDFVIIV-------IDELRDSMEFSYLNDVLK------GFDFYF------GFN 150

Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
              ++ + Q    +   +V T  S +L+ + Y+   V  A+  +  ++  +    T   +
Sbjct: 151 EKFDASLYQ----YYENVVYTKPSFYLNNDQYQQVIVSRAIRDNAKLNITELTTTTGSKF 206

Query: 254 LKNRSEMVSI--------FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
           ++ + +  ++         S L +AL    E+  +C + L      LP++   + +D+ +
Sbjct: 207 VRTQEDFKNLLNVENPLLKSMLEKALVKQAEVIGKCRYNLGFKGYHLPKYKYGKDEDVFQ 266

Query: 306 --EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                + LR     G + +L       G     Y++R ++EL +I  M F+ YFLIV DF
Sbjct: 267 NFSSRDYLRYLVQKGAKEKL------FGKDLYKYKKRYEYELKIIDEMGFNDYFLIVYDF 320

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           +++AK N I VG GRGS AGS+  Y L IT+ DPL ++LLFERFLN +R+SMPD DIDF 
Sbjct: 321 VKYAKSNGILVGAGRGSAAGSLVCYLLNITEADPLEYNLLFERFLNKERISMPDIDIDFQ 380

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             RRDEVI+YV+ KYG ++VAQIITF + Q+K+A R+  R LQ      + L  +  N  
Sbjct: 381 DTRRDEVIKYVEEKYGEDKVAQIITFTTFQSKSAARESARILQFD---DNSLKFISSNIS 437

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG-DRPLSQL 542
           +     +        R          R   I+  LE L ++ S HAAG+VI  + PL + 
Sbjct: 438 STRTLKECYESSEPLRNFVNESTINRRWFSIALSLESLPKNPSVHAAGVVISDNNPLMKY 497

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            P+  +      +TQ+ M  +E  GL+K DFLG++ LT++   ++ + +   + D++ I 
Sbjct: 498 APLA-ESNMTKYLTQWTMDDVESVGLLKIDFLGIRYLTMVSSIVEQIKKENPEFDITKIN 556

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
           + D + Y+L     T GIFQ ESSGM++ L  ++P    DI+A+ +LYRPGP+  I  Y 
Sbjct: 557 YKDPKVYNLFAEGRTEGIFQFESSGMKEKLRLLKPTEFNDIVAMNALYRPGPMAQIETYI 616

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            RK+G+EK+   HP ++ +LK+T GVI+YQEQ+M IA   +  SL+EAD +RRA+ KK K
Sbjct: 617 RRKHGEEKVNYPHPNLEKILKDTYGVIVYQEQIMLIAVNFAHMSLNEADNMRRAVSKKKK 676

Query: 723 EEMDKQ 728
           +     
Sbjct: 677 KIWSIM 682


>gi|290968855|ref|ZP_06560392.1| DNA polymerase III, alpha subunit, Gram-positive type [Megasphaera
            genomosp. type_1 str. 28L]
 gi|290781151|gb|EFD93742.1| DNA polymerase III, alpha subunit, Gram-positive type [Megasphaera
            genomosp. type_1 str. 28L]
          Length = 1199

 Score =  260 bits (665), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 168/991 (16%), Positives = 312/991 (31%), Gaps = 196/991 (19%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA---CAAGIQ 68
            V L +H+  S ++  +++  ++  +     PA+A+TD   + S     Q+     +  ++
Sbjct: 286  VELHLHTVMSDMDALITVKQLIKTVKKWHHPAVAVTDHGVVQSFP-LLQEISTDKSNQVK 344

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
             I G +  +                     I++L     G + L  LVS  +L    +  
Sbjct: 345  VIYGMEGYLFDD-----------RIDRSYHIIILAKNQVGIRNLYRLVSISHLKYIYRGR 393

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS--SQVAEKRLLTFKKLFGDRLYVNL 186
             RI  + L E   EGLI+ +   +G + R+        +  ++    +        Y+ +
Sbjct: 394  PRIPRAILNEY-REGLILGSACEAGELIRSMVQKKLPYEELKRIASWYD-------YLEI 445

Query: 187  QR--HRGY--------DRY----RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            Q   + G+        D          V+++        VAT ++ FL+ ED    ++LM
Sbjct: 446  QPISNNGFLVREGLVKDEEGLRNINRTVLKIGDELGKLTVATGDAHFLNPEDKIYREILM 505

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
                          +  PD Y     EM+  FS L E     V +    + I ++   + 
Sbjct: 506  ---TGKGFEDA---QYQPDLYFHTTDEMLKEFSYLGEERAREV-VITNTNKINEMIEDVR 558

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
            P   E             L+                      +    RL  E   I    
Sbjct: 559  PIPKETLYFPKIAGSSEALKKMCYDKAYKLYGNPL------PKIVADRLTEEFTSILGNG 612

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------- 399
            F   + I    ++ +  +   VG  RGS   S  A    IT+++PL              
Sbjct: 613  FGVLYYIAHKLVKHSHDDGYLVG-SRGSVGSSFVATMADITEVNPLPPHYVCPSCQYSEF 671

Query: 400  ----------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
                                         ++ F  FL  D   +PD D++F  +   +  
Sbjct: 672  FIKGEVGGGFDLPHKKCPHCGASLHKDGHNIPFAIFLGFDGDKVPDIDLNFSGEYHPQAH 731

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +Y +  +G + V +  T G+++ K A   V +                       V+   
Sbjct: 732  KYTEELFGKDNVFRAGTIGAVKDKTAYGYVMK---------------WAEKRGIKVNDAY 776

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDV 549
            I                     +     G+      H  G+  +  D  +    P+    
Sbjct: 777  I-------------------NSLVSGCTGVKNTTGQHPGGVMVIPRDMDVHHFTPVQYPA 817

Query: 550  R---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF---LAQRGVKVDLSLIPF 603
                S +  T F+   IE   L+K D LG    T+++   D     A+     D   +  
Sbjct: 818  NKKDSGIITTHFDYHSIE-GRLVKLDILGHDDPTVIRMLEDLTGVDARTIAFDDAETMSL 876

Query: 604  DDHET------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                         L +  G+LGI +  +S +R+ L   +P    +++ +           
Sbjct: 877  FCSPAALGLTPEELGSPVGSLGIPEFGTSFVRKMLLDTKPKTFSELVRISGFSHG----- 931

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
                    N ++ I S    +   +     ++ Y   +    Q  + + + E     + +
Sbjct: 932  --TDVWLNNAQDLITSGTVPLKEAVSTRDDIMNYL--IQHGIQPKTSFKVMENVRKGKGI 987

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K  K             A   G      +   + +     Y F ++HA AY +++++ A
Sbjct: 988  DKVNKVGEKTTDFEGELKA---GNIPDWFIESCKKI----GYLFPRAHAVAYVMMAFRIA 1040

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKKFCQ------------------------------ 807
            W K HYP+ + AA  T+     +                                     
Sbjct: 1041 WFKIHYPLAYYAAYFTIRAKAFKLSAMIHGLEVQKKVMKDIEAKGTKASKIETDLYSALE 1100

Query: 808  ---DARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
               +        +   ++      F + D +I     AI G+G   A  I+ A    PF 
Sbjct: 1101 LAVEMSLRGFSFLNVDIHRSQAKKFIICDGKILPPFTAIDGLGDNVAEQIVAAREKAPFS 1160

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            S ED   R    K+ + +L+ +  AG L   
Sbjct: 1161 SKEDLRLR---GKIGQSLLDVMTEAGCLKEL 1188


>gi|16329834|ref|NP_440562.1| DNA polymerase III subunit alpha [Synechocystis sp. PCC 6803]
 gi|1652319|dbj|BAA17242.1| DNA polymerase III alpha subunit [Synechocystis sp. PCC 6803]
          Length = 458

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 86/295 (29%), Positives = 147/295 (49%), Gaps = 16/295 (5%)

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
              A   FNKSH+ AYA ++YQTA++K +YPVE++AA +T   D+ EK++K+ ++ ++  I
Sbjct: 32   AIAANCFNKSHSTAYAYVTYQTAYLKANYPVEYMAALLTASSDSQEKVEKYRENCQKMGI 91

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS---ADKPFDSLEDFCSR 871
             + PP +N     F      I + L+A++ +G      I+ A     +K F SL DFC++
Sbjct: 92   TVEPPDINRSQRHFTPLGEAILFGLSAVRNLGEGAIEQIITARDNSEEKRFKSLADFCTQ 151

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA--- 928
            VD + +NRR +E+L+ AGA D    +R QLL  L+ +  +AQ   K +     NIF    
Sbjct: 152  VDLRVVNRRAIETLIMAGAFDGVQSNRNQLLHDLELVIAWAQKRAKEKETGQLNIFDSLT 211

Query: 929  ---------HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                          F  + +    +  +   + + E+  LGFY S HPL   +   R + 
Sbjct: 212  AGESIKAKEAANNGFEQEPSAPPVAEFSLQEKLQLEKEHLGFYVSEHPLKSVQRSARLLS 271

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFFP 1033
                 +         +   A++V+ ++  T+K G  + ++T  + + + EA  FP
Sbjct: 272  PINLVDLDQYKVRQKVSAVAILVAVKKIITKKNGQPMAFLTLEDMSGQSEAVVFP 326


>gi|282897962|ref|ZP_06305957.1| hypothetical protein CRD_02527 [Raphidiopsis brookii D9]
 gi|281197106|gb|EFA72007.1| hypothetical protein CRD_02527 [Raphidiopsis brookii D9]
          Length = 447

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 83/289 (28%), Positives = 139/289 (48%), Gaps = 12/289 (4%)

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A   FNKSH+ AY  ++YQTA++K +YP+E++AA +T    + +K++K+  +     I+I
Sbjct: 34   ASNCFNKSHSTAYGYVTYQTAYLKANYPLEYMAALLTANSGDTDKVQKYLNNCNNMGIEI 93

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSK 875
             PP +N   +DF   D +I +  +A++ VG      I++A      F SL DFC R+D +
Sbjct: 94   DPPDINRSGLDFTPADQKILFGFSAVRNVGQNAIAAILDAREKGAEFKSLGDFCDRIDLR 153

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
             +NRR LESL+  GA D    +R QL++ L+ + ++AQ   K+R     N+F        
Sbjct: 154  VVNRRTLESLIQCGAFDKIESNRHQLVKDLELVYEWAQSRAKDRAIGQGNLFDFMGAGTR 213

Query: 936  DK-----------ITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            +               +  S      +   E+ +LGFY S HPL   K     +      
Sbjct: 214  NASTSSNNGFKSIPKADPVSDYPPQEKLRMEKELLGFYVSAHPLKNIKQSSSLLAPINLV 273

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +       N + +  M+   ++  T+KG ++  +   +     EA  FP
Sbjct: 274  DLGEQKDKNLVCVVVMLNHVKKVMTKKGEQMAILQIEDLTTTSEAVVFP 322


>gi|22299612|ref|NP_682859.1| DNA polymerase III subunit alpha [Thermosynechococcus elongatus BP-1]
 gi|22295796|dbj|BAC09621.1| DNA polymerase III alpha subunit [Thermosynechococcus elongatus BP-1]
          Length = 452

 Score =  260 bits (664), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/295 (29%), Positives = 143/295 (48%), Gaps = 16/295 (5%)

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
              A   FNKSH+ AY  ++YQTA++K ++PVE++AA +T    + +K++++        I
Sbjct: 31   AIAANCFNKSHSTAYGYVTYQTAFLKANFPVEYMAALLTANSGDQDKVQRYIATCLSMGI 90

Query: 815  QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRV- 872
            +++PP VN   +DF    N+I + L+A++ VG      I++A A+   F SL DFC RV 
Sbjct: 91   EVLPPDVNRSDIDFTPVGNKILFGLSAVRNVGQGVIEAILQARAEGGAFQSLADFCERVP 150

Query: 873  ----DSKKLNRRVLESLVFAGALDCFGY--SRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
                DS+ LNRR LESL+  GA+D      +R QL+Q L  + ++A    K+R     N+
Sbjct: 151  RAGGDSRILNRRALESLIACGAMDSLHPQRNRNQLMQDLPLVLEWALARAKDRAVGQVNL 210

Query: 927  FA--------HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
            F           KG++    +         + +   E+ +LGFY S HPL         +
Sbjct: 211  FDMLAGDSSNESKGSYDPAPSAPPVDDLPDTEKLRQEKDLLGFYVSNHPLKDIHRPAAMI 270

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                            + + A++   +   T++G R+  V   +   + EA  FP
Sbjct: 271  APISLANLEQHTGQGVVSVIALLTGLKSITTKRGERMAIVQLEDLTGQAEAVVFP 325


>gi|297580887|ref|ZP_06942812.1| DNA polymerase III [Vibrio cholerae RC385]
 gi|297534713|gb|EFH73549.1| DNA polymerase III [Vibrio cholerae RC385]
          Length = 353

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 3/224 (1%)

Query: 812  FNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFC 869
              + ++PP +N+    F V DN  I Y + AIKGVG      I+EA      F  L DFC
Sbjct: 1    MGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFC 60

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            +R+D KK+N+RV+E L+ AGALD  G  R  ++ S+D+  + A    +       ++F  
Sbjct: 61   ARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMASVDDAVRAASQHHQAEAFGQADMFGV 120

Query: 930  EKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
                  + +    +       VR E E+  LG Y +GHP+D Y   L K       E+  
Sbjct: 121  LTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAP 180

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            T R  ++ +A +V++ +   T++G+RIG +T  + +   E   +
Sbjct: 181  TRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDDRSGRMEVMLY 224


>gi|223036106|gb|ACM78706.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. SA0606-03S]
 gi|223036114|gb|ACM78710.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. SA0606-63]
          Length = 336

 Score =  260 bits (663), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 124/352 (35%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
               PA+A+TD  NL   ++F   A  +G++PIIG    +          Q       + 
Sbjct: 1   ELGMPAMALTDFTNLCGLVKFYGTAHGSGVKPIIGADFKM----------QSDEFGEELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + +L +   GY+ L  L+S+ YL    +    I  +WL E+ +EGLI+L+G  +G I +
Sbjct: 51  QLTVLAADNAGYKNLTLLISKAYLRGHVQHQPVIDRAWLAEM-SEGLIVLSGAKNGDIGK 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
           A    + ++ E  +  +K+ F DR Y+ L R    D        + LA  H+LP+VATN 
Sbjct: 110 ALLKGNRKLVESCVEFYKQHFQDRFYLELIRTGRPDEETYLHFAIDLAEQHDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +FLS + ++AH++ +A+     +    RP+  +P  YL+   EM  +F+D+PEALEN+V
Sbjct: 170 VVFLSADLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEEMCELFADIPEALENSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +          EE   L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPAFPTEGMEETEFLVMKSREGLEERLEFLFPNEEERKK 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGAGS 336


>gi|218441796|ref|YP_002380125.1| DNA polymerase III subunit alpha [Cyanothece sp. PCC 7424]
 gi|218174524|gb|ACK73257.1| DNA-directed DNA polymerase [Cyanothece sp. PCC 7424]
          Length = 449

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 91/290 (31%), Positives = 148/290 (51%), Gaps = 12/290 (4%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   D+ EKI+K+ ++ ++ NI 
Sbjct: 33   IASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDSQEKIEKYRENCQKLNID 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS--ADKPFDSLEDFCSRVD 873
            + PP +N    DF     +I + L+A++ +G     +I++A   A   F+SL DFCSRVD
Sbjct: 93   VEPPDINRSQKDFTPIKEKILFGLSAVRNLGENAIENILKARQEAGGKFESLADFCSRVD 152

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----- 928
             + +NRR LE+L++ GA D    +R QL++ LD +  +AQ   K + +   NIF      
Sbjct: 153  LRIVNRRALETLIYCGAFDQINDNRHQLIEYLDIVIPWAQKRNKEKESGQLNIFDALLEN 212

Query: 929  -----HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                   +  F     L   +  +   + + E+  LGFY S HPL+        +     
Sbjct: 213  IENKNDNEVVFDQAPNLPSVADYSLDEKLKLEKEHLGFYVSEHPLNHILKKAHVLSPVNL 272

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             E         I +  M+ S ++  TR+G  + +V   +   + E   FP
Sbjct: 273  NELETQNSRKLISVVVMINSVKKITTREGKPMAFVGLEDTTAQVEGILFP 322


>gi|113475572|ref|YP_721633.1| DNA polymerase III subunit alpha [Trichodesmium erythraeum IMS101]
 gi|110166620|gb|ABG51160.1| DNA polymerase III, alpha subunit / Intein [Trichodesmium erythraeum
            IMS101]
          Length = 517

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/292 (29%), Positives = 145/292 (49%), Gaps = 14/292 (4%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +Y +E++AA +T    + +K++K+  + ++FNI+
Sbjct: 33   IASNCFNKSHSTAYAYVAYQTAYLKANYSLEYMAALLTANSGDQDKVQKYLANCQKFNIE 92

Query: 816  IMPPSVNTPCVDFKV--------GDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLE 866
            + PP++N   VDF            ++I   L+A+K VG      I++A  +   F SL 
Sbjct: 93   VEPPNINQSEVDFTPLPKVATKEIKDKILVGLSAVKNVGEGAIEAILKARKEGGEFKSLA 152

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENI 926
            D C RV+   LN R LESL+  GA D    +R QL++ L+ + K+AQ   K+R     ++
Sbjct: 153  DLCDRVNLNALNSRTLESLIKCGAFDKIEANRHQLIKDLEGVMKWAQDRNKDRNIGQLSL 212

Query: 927  F-----AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
            F       +   F         S   +  + E E+ +LGFY S HPL   +   +     
Sbjct: 213  FDNHIPGAKNSAFDSVPKSSPVSDFPAKEKLEYEKEILGFYVSDHPLKYAQEQNQIQDAI 272

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +       + I+L  M+   +   T+KG  + ++   +   + +A  FP
Sbjct: 273  SIAQMKEKKSNSKIKLVVMLAGIKPHVTKKGDPMAFIQVEDMTGQLDAVVFP 324


>gi|215447691|ref|ZP_03434443.1| error-prone DNA polymerase [Mycobacterium tuberculosis T85]
          Length = 494

 Score =  259 bits (662), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 119/451 (26%), Positives = 205/451 (45%), Gaps = 27/451 (5%)

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
              +G++VDL+ +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L
Sbjct: 13   EHKGIEVDLARLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVAL 72

Query: 650  YRPGPID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             RPGPI   ++  Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S 
Sbjct: 73   IRPGPIQGGSVHPYIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSA 132

Query: 708  SEADVLRRAM-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSH 765
            +EAD LRRAM  K+  E M + + RF  G    +G    +   I+E L  FA++GF +SH
Sbjct: 133  AEADQLRRAMGSKRSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESH 192

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A ++A + + +AW K H+P  F AA +  +       +    DAR+  + +  P VN   
Sbjct: 193  ALSFASLVFYSAWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASL 252

Query: 826  VDFKVG--DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVL 882
                       +   L A++ +G   A  ++    A+ PF SL D  SRV   +L+   +
Sbjct: 253  AHATCENAGTEVRLGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQV 309

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E+L  AGAL CFG SR +                   T + + +      +      +  
Sbjct: 310  EALATAGALGCFGMSRRE----------ALWAAGAAATGRPDRLPGVGSSS-----HIPA 354

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                +       +    G     +P    +  L  MG+   E   +   G+ + +A  V 
Sbjct: 355  LPGMSELELAAADVWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVT 414

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +Q+  T +G  + ++   +          P
Sbjct: 415  HRQRPATAQG--VTFINLEDETGMVNVLCTP 443


>gi|289759527|ref|ZP_06518905.1| DNA polymerase subunit III (alpha) dnaE2 [Mycobacterium tuberculosis
            T85]
 gi|289715091|gb|EFD79103.1| DNA polymerase subunit III (alpha) dnaE2 [Mycobacterium tuberculosis
            T85]
          Length = 491

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 119/451 (26%), Positives = 205/451 (45%), Gaps = 27/451 (5%)

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
              +G++VDL+ +   +   Y +L    ++G+FQ+ES      L  ++P    D++  V+L
Sbjct: 10   EHKGIEVDLARLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVFYDLVVEVAL 69

Query: 650  YRPGPID--NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             RPGPI   ++  Y  R+NG + ++  HP + P L++T GV ++QEQ+MQ+A   +G+S 
Sbjct: 70   IRPGPIQGGSVHPYIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQLAVDCAGFSA 129

Query: 708  SEADVLRRAM-GKKIKEEMDKQKERFISGASK-NGISKTIAVNIFELLAKFADYGFNKSH 765
            +EAD LRRAM  K+  E M + + RF  G    +G    +   I+E L  FA++GF +SH
Sbjct: 130  AEADQLRRAMGSKRSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAFANFGFPESH 189

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A ++A + + +AW K H+P  F AA +  +       +    DAR+  + +  P VN   
Sbjct: 190  ALSFASLVFYSAWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAVHGPCVNASL 249

Query: 826  VDFKVG--DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVL 882
                       +   L A++ +G   A  ++    A+ PF SL D  SRV   +L+   +
Sbjct: 250  AHATCENAGTEVRLGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRV---QLSVPQV 306

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEK 942
            E+L  AGAL CFG SR +                   T + + +      +      +  
Sbjct: 307  EALATAGALGCFGMSRRE----------ALWAAGAAATGRPDRLPGVGSSS-----HIPA 351

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                +       +    G     +P    +  L  MG+   E   +   G+ + +A  V 
Sbjct: 352  LPGMSELELAAADVWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVT 411

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +Q+  T +G  + ++   +          P
Sbjct: 412  HRQRPATAQG--VTFINLEDETGMVNVLCTP 440


>gi|172039636|ref|YP_001806137.1| DNA polymerase III subunit alpha [Cyanothece sp. ATCC 51142]
 gi|171701090|gb|ACB54071.1| DNA polymerase III alpha subunit, C-terminal intein/extein
            [Cyanothece sp. ATCC 51142]
          Length = 452

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/290 (29%), Positives = 148/290 (51%), Gaps = 12/290 (4%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   DN +K++K+ ++ ++  I 
Sbjct: 33   IASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDNQDKVEKYRENCQKMGID 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS--ADKPFDSLEDFCSRVD 873
            ++PP +N    DF     +I +  +A++ +G     +I++A   A+  F+SL DFC RVD
Sbjct: 93   VLPPDINRSQKDFTPVGKQILFGFSAVRNLGEGAIDNILKAREEAEGQFESLADFCCRVD 152

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG- 932
             + +N+R LE+L++AGA D    +R QL+  L+ +  +AQ   K + +   NIF    G 
Sbjct: 153  LRSVNKRALETLIYAGAFDAIYPNRKQLINDLELVVPWAQKRTKEKESGQLNIFDLMSGN 212

Query: 933  ---------TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                      F    +       +   + + E+  LGFY S HPL   K   + +     
Sbjct: 213  TTESTEANTDFKQAPSASSVEDYSLQDKLKLEKEHLGFYVSEHPLTAVKKAAKILSPINL 272

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             E         +    MV   +Q  T+KG ++ ++   + + + +A  FP
Sbjct: 273  NEMGEQKAKTKVSAVIMVNEVKQYTTKKGDQMAFLVLEDGSAQVDAVCFP 322


>gi|255606732|ref|XP_002538623.1| conserved hypothetical protein [Ricinus communis]
 gi|223511314|gb|EEF23760.1| conserved hypothetical protein [Ricinus communis]
          Length = 242

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 131/226 (57%), Positives = 162/226 (71%), Gaps = 1/226 (0%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P FVHL+VHS+YSLLEGAL L  IL K A D QPAIAI DTNNLF ALEFSQKA   G+Q
Sbjct: 17  PEFVHLRVHSAYSLLEGALPLKKILAKAAGDSQPAIAIADTNNLFVALEFSQKAMDEGLQ 76

Query: 69  PIIGCQLDIDMQDNLKMTNQG-KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           PIIGCQ+ IDM+D  +   +G +     +PSIVLL +T +GY+RL++LVSR YL  +G  
Sbjct: 77  PIIGCQVSIDMEDGGEGEKRGPQQALAKLPSIVLLAATEQGYERLVDLVSRAYLGGEGNH 136

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
           +V I  SWL EIGTEG+I LTG  +GP+D A     +  A  RLL  K+LFGDRLY+ LQ
Sbjct: 137 AVHIAASWLDEIGTEGMIALTGSLTGPVDMALKEGHAPQALSRLLALKRLFGDRLYIELQ 196

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
           RH  YDR  E +++ +AY HE+PLVATN + F + +DY+AHD LMA
Sbjct: 197 RHGTYDRRHEQKMIAMAYEHEIPLVATNEAFFPTRDDYDAHDALMA 242


>gi|282899107|ref|ZP_06307088.1| hypothetical protein CRC_00420 [Cylindrospermopsis raciborskii
            CS-505]
 gi|281196023|gb|EFA70939.1| hypothetical protein CRC_00420 [Cylindrospermopsis raciborskii
            CS-505]
          Length = 448

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 85/289 (29%), Positives = 140/289 (48%), Gaps = 12/289 (4%)

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A   FNKSH+ AY  ++YQTA++K +YP+E++AA +T    + +K++K+  +     I+I
Sbjct: 34   ASNCFNKSHSTAYGYVTYQTAYLKANYPLEYMAALLTANSGDTDKVQKYLNNCNNMGIEI 93

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSK 875
             PP +N   +DF   D +I +  +A++ VG      I++A      F SL DFC R+D +
Sbjct: 94   DPPDINRSGLDFTPADQKILFGFSAVRNVGQNAIAGILDARQQGGEFTSLGDFCDRIDLR 153

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE----- 930
             +NRR LESL+  GA D    +R QL++ L+ + ++AQ   K+R     N+F        
Sbjct: 154  VVNRRTLESLIQCGAFDKIESNRHQLVKDLELVYEWAQSRAKDRAIGQGNLFDFMGTGIS 213

Query: 931  ------KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                  K  F      +  S      +   E+ +LGFY S HPL   K     +      
Sbjct: 214  NVSTSSKNGFKSIPKADPVSDYPPQEKLRMEKELLGFYVSAHPLKNIKQSSSLLAPINLV 273

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +       N + +  M+   ++  T+KG ++  +   +     EA  FP
Sbjct: 274  DLGEQKDKNLVCVVVMLNHVKKVMTKKGEQMAILQIEDLTTTSEAVVFP 322


>gi|258539579|ref|YP_003174078.1| DNA polymerase III subunit alpha [Lactobacillus rhamnosus Lc 705]
 gi|257151255|emb|CAR90227.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus Lc 705]
          Length = 433

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 104/345 (30%), Positives = 173/345 (50%), Gaps = 14/345 (4%)

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++YQEQVMQ+A ++ G+SL EAD+LRRAM KK    +  ++++FI GA K G  +  A  
Sbjct: 1    MVYQEQVMQVANVMGGFSLGEADLLRRAMSKKKSSVLAAEQDKFIEGALKQGFPEATAKT 60

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
            ++  + +FA+YGFN+SHA AY+ +++  A++K HYP  F AA M   M+N+ K++ + Q+
Sbjct: 61   VYAYIDRFANYGFNRSHAVAYSKVAFWLAYLKVHYPAAFFAALMNASMNNLPKLRTYVQE 120

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
            A+   + ++ P +N     FK+   +I + L +IKG+       I  A  + PF  L D 
Sbjct: 121  AKARKVGLLGPDINQSNGGFKLSQGKIRFGLLSIKGMRRDFVEAIFAARKNGPFKDLRDL 180

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
              R+D K L     ++   AGA D F  +R Q L +LD +    +            +F+
Sbjct: 181  LQRLDPKWLKTDYYKAPTLAGAFDQFSNNRAQTLANLDELINSVKL-----AGNDVGLFS 235

Query: 929  HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
                         +     +S R E E  VLG Y SGHP+D Y P+  +  +    +   
Sbjct: 236  ML------APKTIEVPEMPASERLEAEAEVLGVYLSGHPVDKYAPLKTQYRLINVSDLEE 289

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               G  + +  +V   ++ +T+ G  + ++   +         FP
Sbjct: 290  ---GRAVDILLLVRHIKRIRTKTGKPMAFIDGQDATGNVSLTIFP 331


>gi|229897023|ref|ZP_04512182.1| DNA polymerase III alpha subunit [Yersinia pestis Pestoides A]
 gi|229700059|gb|EEO88099.1| DNA polymerase III alpha subunit [Yersinia pestis Pestoides A]
          Length = 905

 Score =  258 bits (659), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 242/913 (26%), Positives = 401/913 (43%), Gaps = 100/913 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L V + +SL E AL   N +         A+   D+ N+ S +   + A    +  I G 
Sbjct: 4   LMVRTDFSLGESALKAENAVKIARDAGYTAVISADSMNIASVIPLQRAA-GDDMAVICGV 62

Query: 74  QLDIDMQDNLKMTNQGKTP---------FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +L++      +   +                      L+   +GY+ + EL++     +Q
Sbjct: 63  KLNVVDDPTYEHRARLAKESERCMESLVRDRSYCFTALIKNEQGYRDVCELMTLANKREQ 122

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                R+ L  L     +G I+L    +  I   F         K + T     G D  Y
Sbjct: 123 FYFVPRLALDQLAAAYAKGNIIL---LTSDIGSVFQRRDFA---KIIGTLVTAGGRDNFY 176

Query: 184 VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
             +  H   +      + +++A   ++  VA   + + + +D +  D+   V ++  + Q
Sbjct: 177 SVVYPHPTPFYDQINVRAMKVASALKIEPVAFYPAYYEAVDDADIKDIAHMVTNNIKIDQ 236

Query: 243 KDR-----PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             R      R    +  ++  E +  FS   +        +     I++         + 
Sbjct: 237 PHRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIEACTWRW-HELP 295

Query: 298 KECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                +  +E   L   AVAGL  R      G        + Y  RL +E++ + R+ F 
Sbjct: 296 PALPKMADDEPATLMKLAVAGLRKRLTTKEFGYTPPASEHRVYVDRLKYEMDTLTRLGFC 355

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
           GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+R  LLFERF+NP+R+ 
Sbjct: 356 GYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFINPERLD 415

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +ALRD  R     Y     
Sbjct: 416 LPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARI----YGVDAA 471

Query: 475 LCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
              +            ++ +   +               + + KL+ L R    HAAG++
Sbjct: 472 DMAVSKEFKNLEDDSLSLEELREQLASLDKYATKYPEAFKAACKLQSLMRGFGRHAAGMI 531

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-R 592
           +   PL +  P+      +     F+ ++ E  GLIK D LGL TL LL  +  ++ +  
Sbjct: 532 VAGVPLVERTPVELR--GNARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRYIKEST 589

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ----PDCIEDIIALVS 648
           G  ++L  IP DD +         T G+FQLES  MR+ L+ +     P   + ++A  +
Sbjct: 590 GEDINLDAIPLDDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTVVATTA 649

Query: 649 LYRPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
           L+RPGPI + ++ +     K      S+HP++D +  ET GVI+YQEQ M   +LL+G++
Sbjct: 650 LFRPGPIQSGMLDDYVSVAKGFMAPQSLHPVLDELTAETNGVILYQEQTMNATRLLAGFT 709

Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGAS----------------------------- 737
           ++EAD +R+A+GKK  E+M    E+F+  A                              
Sbjct: 710 MAEADGVRKAIGKKDMEKMKSMGEKFVVQAQAGWIDVEMEDGTTQRIHRAEHFKCEDGAL 769

Query: 738 -----------------------KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
                                  + G+S+T A  I++   K   Y FNKSH  AY++ISY
Sbjct: 770 RTVEEALEAGVKLPMAAVRVTGSQPGLSETKAKEIWDAFEKNGAYQFNKSHPVAYSLISY 829

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV---- 830
           Q+ W+KTHYP EF AA++T  +   +K +   +DA  + I ++PP VN      ++    
Sbjct: 830 QSMWLKTHYPAEFFAAALT--ILGEDKHQGLVKDALTYGIHVLPPDVNVSSNRIEIRTLE 887

Query: 831 GDNRIYY-SLAAI 842
             +++ Y   +A+
Sbjct: 888 DGSQVLYAPFSAV 900


>gi|323934241|gb|EGB30665.1| bacterial DNA polymerase III alpha [Escherichia coli E1520]
          Length = 787

 Score =  258 bits (659), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 214/790 (27%), Positives = 361/790 (45%), Gaps = 43/790 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L V + +SL E AL   N +         A+   D+ N+ S +   + A    +  I G 
Sbjct: 4   LMVRTDFSLGESALKAENAVKIAREAGYTAVISADSMNIASVIPLQRAA-GDDMAVICGV 62

Query: 74  QLDIDMQDNLKMTNQ---------GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +L+I      +   +                  S   L+   +GY+ + EL++     +Q
Sbjct: 63  KLNIVDDPTYEHRAKLAKESMRCMESLERGRNYSFTALIKNEQGYRDICELMTVANTREQ 122

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                R+ L  L     +G I+L    +  I   F  N      K + T     G D  Y
Sbjct: 123 FYFVPRLSLEQLVSTYAKGNIIL---LTSDIGSVFQRNDFA---KIISTLITAGGKDNFY 176

Query: 184 VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
             +  H   +      + +++A   ++  VA   + + S +D +  D+   V ++  + Q
Sbjct: 177 SVVYPHPTPFYDQINVRAMKVASALKIEPVAFYPAYYESIDDADIKDIAHMVTNNIKIDQ 236

Query: 243 KDR-----PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             R      R    +  ++  E +  FS   +        +     I+          + 
Sbjct: 237 PHRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIDACTWRW-HELP 295

Query: 298 KECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                +  +E   L   AVAGL  R      G        + Y +RL +E++ + R+ F 
Sbjct: 296 PALPKMADDEPATLMKLAVAGLRKRLTTKEFGYTPPASENRVYVERLKYEMDTLTRLGFC 355

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
           GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+R  LLFERF+NP+R+ 
Sbjct: 356 GYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFINPERLD 415

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +ALRD  R   +  S    
Sbjct: 416 LPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARIYGV-ESADMA 474

Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           + K + N     + L+ + +  +                 + KL+ L R    HAAG+++
Sbjct: 475 VSKELKNVEDDSLPLEELRE--QLASLDKYATKYPDAFNAACKLQSLMRGFGRHAAGMIV 532

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
              PL++  P+ R    D     F+ ++ E  GLIK D LGL TL LL  +  ++ +   
Sbjct: 533 AGVPLTERTPVERR--GDARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRYIKENTG 590

Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ----PDCIEDIIALVSL 649
             ++L  I  +D +         T G+FQLES  MR+ L+ +     P   + ++A  +L
Sbjct: 591 EDINLDAISLEDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTVVATTAL 650

Query: 650 YRPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
           +RPGPI + ++ +     K      S+HP++D + ++T GV+IYQEQ+M   ++L+G+S+
Sbjct: 651 FRPGPIQSGMLDDYVSVAKGFMAPHSLHPMLDDISRDTNGVLIYQEQIMAATRILAGFSM 710

Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY----GFNK 763
           +EAD +R+A+GKK  E+M      FI  A +  ++ ++       + K A      G  +
Sbjct: 711 AEADSVRKAIGKKDMEKMKSIGGDFIKRAEEGWVTVSLDDGSTRKIHKAARLLCADGERR 770

Query: 764 SHAAAYAVIS 773
           ++A A A+ +
Sbjct: 771 TYAEAMAINA 780


>gi|309797648|ref|ZP_07692035.1| DNA polymerase III, alpha subunit [Escherichia coli MS 145-7]
 gi|308118745|gb|EFO56007.1| DNA polymerase III, alpha subunit [Escherichia coli MS 145-7]
          Length = 787

 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 214/790 (27%), Positives = 361/790 (45%), Gaps = 43/790 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L V + +SL E AL   N +         A+   D+ N+ S +   + A    +  I G 
Sbjct: 4   LMVRTDFSLGESALKAENAVKIAREAGYTAVISADSMNIASVIPLQRAA-GDDMAVICGV 62

Query: 74  QLDIDMQDNLKMTNQ---------GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +L+I      +   +                  S   L+   +GY+ + EL++     +Q
Sbjct: 63  KLNIVDDPTYEHRAKLAKESMRCMESLERGRNYSFTALIKNEQGYRDICELMTVANTREQ 122

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                R+ L  L     +G I+L    +  I   F  N      K + T     G D  Y
Sbjct: 123 FYFVPRLSLEQLVSTYAKGNIIL---LTSDIGSVFQRNDFA---KIISTLITAGGKDNFY 176

Query: 184 VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
             +  H   +      + +++A   ++  VA   + + S +D +  D+   V ++  + Q
Sbjct: 177 SVVYPHPTPFYDQINVRAMKVASALKIEPVAFYPAYYESIDDADIKDIAHMVTNNIKIDQ 236

Query: 243 KDRPRVTPDHY-----LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             R R+           ++  E +  FS   +        +     I+          + 
Sbjct: 237 PHRLRIPHQRDNAINGRRHLLEALKAFSVRMDVPVTAAMASTTQDSIIDACTWRW-HELP 295

Query: 298 KECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                +  +E   L   AVAGL  R      G        + Y +RL +E++ + R+ F 
Sbjct: 296 PALPKMADDEPATLMKLAVAGLRKRLTTKEFGYTPPASENRVYVERLKYEMDTLTRLGFC 355

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
           GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+R  LLFERF+NP+R+ 
Sbjct: 356 GYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFINPERLD 415

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +ALRD  R   +  S    
Sbjct: 416 LPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARIYGV-ESADMA 474

Query: 475 LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
           + K + N     + L+ + +  +                 + KL+ L R    HAAG+++
Sbjct: 475 VSKELKNVEDDSLPLEELRE--QLASLDKYATKYPDAFNAACKLQSLMRGFGRHAAGMIV 532

Query: 535 GDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG- 593
              PL++  P+ R    D     F+ ++ E  GLIK D LGL TL LL  +  ++ +   
Sbjct: 533 AGVPLTERTPVERR--GDARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRYIKENTG 590

Query: 594 VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ----PDCIEDIIALVSL 649
             ++L  I  +D +         T G+FQLES  MR+ L+ +     P   + ++A  +L
Sbjct: 591 EDINLDAISLEDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTVVATTAL 650

Query: 650 YRPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
           +RPGPI + ++ +     K      S+HP++D + ++T GV+IYQEQ+M   ++L+G+S+
Sbjct: 651 FRPGPIQSGMLDDYVSVAKGFMAPHSLHPMLDDISRDTNGVLIYQEQIMAATRILAGFSM 710

Query: 708 SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY----GFNK 763
           +EAD +R+A+GKK  E+M      FI  A +  ++ ++       + K A      G  +
Sbjct: 711 AEADSVRKAIGKKDMEKMKSIGGDFIKRAEEGWVTVSLDDGSTRKIHKAARLLCADGERR 770

Query: 764 SHAAAYAVIS 773
           ++A A A+ +
Sbjct: 771 TYAEAMAINA 780


>gi|298492691|ref|YP_003722868.1| nucleic acid-binding OB-fold tRNA/helicase-type protein ['Nostoc
            azollae' 0708]
 gi|298234609|gb|ADI65745.1| nucleic acid binding OB-fold tRNA/helicase-type ['Nostoc azollae'
            0708]
          Length = 451

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 86/292 (29%), Positives = 142/292 (48%), Gaps = 14/292 (4%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AY  ++YQTA++K +YP+E++AA +T    + +K++K+  +     I+
Sbjct: 33   IASNCFNKSHSTAYGYVTYQTAYLKANYPLEYMAALLTSNSGDTDKVQKYLNNCTSMGIE 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDS 874
            I PP +N   +DF   + +I +  +A++ VG      I+EA A+   F SL DFC R+D 
Sbjct: 93   IDPPDINRSGLDFTPAEKKILFGFSAVRNVGQNAIACILEARAEGGEFKSLGDFCDRIDL 152

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            + +NRR LESL+  GA D    +R QL++ L+ +  +AQ   K R +   N+F    G+F
Sbjct: 153  RAVNRRTLESLIQCGAFDKIESNRQQLIRDLELVYDWAQSRAKERASGQGNLFDLMGGSF 212

Query: 935  SDKITL----------EKFS---VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
            ++   L           K           +   E+ +LGFY S HPL   K     +   
Sbjct: 213  ANNSNLQKSNNAFESAPKAEVTLDFPPQEKLRLEKELLGFYVSAHPLKDIKQSSSLLAPI 272

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +         +    M+ + ++  T+KG  +  +   +     EA  FP
Sbjct: 273  NLSQLGDQKDNTMLCAVVMLNNVKKVVTKKGDPMAILQIEDLTASSEAIVFP 324


>gi|116687207|ref|YP_840453.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424]
 gi|116652922|gb|ABK13560.1| DNA polymerase III, alpha subunit [Burkholderia cenocepacia HI2424]
          Length = 422

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 117/416 (28%), Positives = 173/416 (41%), Gaps = 29/416 (6%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A  A + 
Sbjct: 10  PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKVANMP 69

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIG    +   D                    L    +GY  L E +S   +  + K S
Sbjct: 70  LIIGSHFRLTATDGSPALA-----------FTALAMNRDGYGNLCEFISLGRMRGK-KGS 117

Query: 129 VRICLSWLQ--EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            R+    +   E     L  L    +  I    F  + Q  +  +  F ++FGDR +V L
Sbjct: 118 YRLAPLDVDHPEAPYAHLRGLPDCLA--ILSPDFPANEQRLDAHVEWFARVFGDRAWVAL 175

Query: 187 QRH-RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             H R  D      V ++A  H +P+VAT+  L          DVL  +     V  +  
Sbjct: 176 TLHARAMDDIHRGVVERVAARHGVPVVATSWPLMHVRSRKPLQDVLTGIRVGRPV-TECG 234

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             + P+     RS +         ALE TV +ARRC+F L       P  +     D   
Sbjct: 235 YELAPNAERHLRSRLRLANIYPAGALEETVRVARRCTFSLDDLKYEYPDELVPAGTD--- 291

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                LR +   G   R   G         D + +++ EL +IA +K+  YFL V D +Q
Sbjct: 292 -PATYLREQTYIGARRRFPAG------IPIDVQAQIEHELQLIADLKYEAYFLTVYDIVQ 344

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           +A++  I    GRGS A S   Y L +T++DP R S+LFERF++ +R   PD D+ 
Sbjct: 345 FAREQGIL-CQGRGSAANSSVCYCLGVTEVDPSRQSMLFERFISKERNEPPDIDVY 399


>gi|223036034|gb|ACM78670.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. PS0705-5A3]
 gi|223036090|gb|ACM78698.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. SA0506-45]
          Length = 336

 Score =  257 bits (656), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 124/352 (35%), Positives = 186/352 (52%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
               PA+A+TD  NL   ++F   A   G++PIIG               Q +     + 
Sbjct: 1   EMGMPAMALTDFTNLCGLVKFYGTAHNCGVKPIIGADF----------IMQSEEFADELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + +L +   GY+ L  L+S  YL    +    I  SWL +   EGLI+L+G  +G I +
Sbjct: 51  KLTVLATNNVGYKNLTLLISEAYLRGHVQHQPVIDKSWLIKY-AEGLIVLSGAKNGEIGK 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNN 216
           A    +  + +K +  ++  F DR Y+ L R +R  +       ++LA   +LP+VATN 
Sbjct: 110 ALLKGNHALVDKCVEFYQTHFADRFYLELIRTNRADEETYLHFALELAENKQLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +FL+EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEALEN+V
Sbjct: 170 VVFLTEEFFEAHEIRVAIHDGYTMVDPRRPKNYSPQQYLRSEAEMCELFADIPEALENSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +          EE   L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPAFPTEGMEETEYLVMKSKQGLEERLEFLFPDPEIRAQ 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL VI  M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLLIELEVINNMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGS 336


>gi|126659690|ref|ZP_01730819.1| DNA polymerase III subunit alpha [Cyanothece sp. CCY0110]
 gi|126619035|gb|EAZ89775.1| DNA polymerase III subunit alpha [Cyanothece sp. CCY0110]
          Length = 452

 Score =  257 bits (655), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 86/290 (29%), Positives = 146/290 (50%), Gaps = 12/290 (4%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA ++YQTA++K +YPVE++ A +T   DN +K++K+ ++ ++  I 
Sbjct: 33   IASNCFNKSHSTAYAYVTYQTAYLKANYPVEYMTALLTASSDNQDKVEKYRENCQKMGID 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS--ADKPFDSLEDFCSRVD 873
            ++PP +N    DF     +I +  +A++ +G     +I++A   A+  F+SL DFC RVD
Sbjct: 93   VLPPDINRSQKDFTPVGKQILFGFSAVRNLGEGAIDNILKAREEAEGAFESLADFCCRVD 152

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG- 932
             + +N+R LE+LV+AGA D    +R QL+  L+ +  +AQ   K + +   NIF    G 
Sbjct: 153  LRSVNKRALETLVYAGAFDAINPNRKQLINDLELVVPWAQKRTKEKESGQLNIFDLMSGN 212

Query: 933  ---------TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
                      F    +       +   + + E+  LGFY S HPL   K   + +     
Sbjct: 213  NTETTESNSDFKHAPSASPVEDYSLQDKLKLEKEHLGFYVSEHPLTAVKKAAKILSPINL 272

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             E         +    M    +Q  T+KG ++ ++   + + + E   FP
Sbjct: 273  NEIAEQKAKTKVSAVIMANEVKQYTTKKGDQMAFLVLEDGSAQVEGVCFP 322


>gi|330004312|ref|ZP_08304870.1| DNA polymerase III, alpha subunit [Klebsiella sp. MS 92-3]
 gi|328536684|gb|EGF63006.1| DNA polymerase III, alpha subunit [Klebsiella sp. MS 92-3]
          Length = 790

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 217/756 (28%), Positives = 351/756 (46%), Gaps = 44/756 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L V + +SL E AL  + +          AI   DT +L S +   Q A    +  I G 
Sbjct: 4   LMVRTDFSLGESALKASRVAKAAKELGYSAIISADTMSLASIIPLQQSA-GDDLAVICGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFP---------TVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +L I      +   +                + S   L+   EGY+ L EL++     +Q
Sbjct: 63  RLVISDNPFYEAAVRKAKEEGSEIPVCKLGRLYSFTALIKNDEGYKDLCELMTLGNRREQ 122

Query: 125 GKQSVRICLSWLQEIGTEG-LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRL 182
                RI L  L E  ++G +++LT        R       Q   K L    ++ G D  
Sbjct: 123 FHFFPRISLEQLAETYSKGNILLLTSDRDSIFHR-------QDFVKILTKLLEVGGRDNF 175

Query: 183 YVNLQR--HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
           Y  +       YD+    + +++A   ++  VA   + +  EED +  D+   V ++   
Sbjct: 176 YSVVYPIATPLYDQ-LNMKAMKVANALKIAPVAFYPAYYEKEEDADLRDIAHMVINNIKT 234

Query: 241 SQKDRPRVTPDHYLKNRSEMV------SIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
            Q  R  +        ++              +     ++  +      I+   +     
Sbjct: 235 DQPYRFHIPHQRDNSIQNRKHLLVRLMEFSKRMGIEGISSAMVNETQDEIIAACSWRWHE 294

Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRL---AQGAIAKGYHAQDYRQRLDFELNVIARM 351
                   + ++E + L   A  GL+ RL     G        Q Y  RL +EL+V+ ++
Sbjct: 295 MPV-SLPVMAEDEGDTLTRMAAEGLKRRLTTLEFGWKPPAEQYQVYINRLRYELSVLKKL 353

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            F GYFL+V + + WA+K +IPVGPGRGS AGS+ A+A+ IT+IDPLR  LLFERF+NP+
Sbjct: 354 GFCGYFLMVENLLSWARKQDIPVGPGRGSSAGSLVAWAIGITNIDPLRHGLLFERFINPE 413

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
           R+ +PD D+DF Q +R  V+ Y++  YG + VA I  F  L   +ALRD  R   +  ++
Sbjct: 414 RLDLPDADLDFSQAQRPRVLEYLEEHYGEKYVAGIPNFSYLGMASALRDTARIYGVS-TE 472

Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
              + K +       ++L+      +         +     + + KL+ L R    HAAG
Sbjct: 473 DMAVSKQLKPFDDEGLTLE--ETREQLGALDKYAKANPEAFDAACKLQSLMRSYGKHAAG 530

Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
           +++   PL++  P+     + +    F+ ++ E  GLIK D LGL TL LL  +  ++ +
Sbjct: 531 VIVSGVPLTERTPVELR--NGVRCIAFDKRFCESMGLIKLDVLGLATLDLLALAKRYIKE 588

Query: 592 RG-VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG----MQPDCIEDIIAL 646
              + V+L  IP DD      +    T G+FQ ES GMR  L+     ++P   E  +A 
Sbjct: 589 NEGIDVNLDAIPLDDKRVLEGMALGETTGVFQFESGGMRNLLKNLGSGIKPMSFEMAVAT 648

Query: 647 VSLYRPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            +LYRPGP+ + ++       +  E   S+HP +D + KET GV++YQEQ+M+ +Q+L+G
Sbjct: 649 TALYRPGPMQSGMMDTYVSVARGYEDAHSLHPSLDELTKETNGVLVYQEQIMKASQILAG 708

Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
           +SLSEAD++R+A+GKK  E+M K    F   A    
Sbjct: 709 FSLSEADMVRKAIGKKDIEKMKKIGADFSDRAQLGW 744


>gi|301646509|ref|ZP_07246383.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            146-1]
 gi|301075262|gb|EFK90068.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            146-1]
          Length = 382

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 83/253 (32%), Positives = 123/253 (48%), Gaps = 4/253 (1%)

Query: 784  PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAI 842
            P EF+AA MT +MDN EK+     +  +  ++I+PP +N+    F V D   I Y + AI
Sbjct: 1    PAEFMAAGMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAI 60

Query: 843  KGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            KGVG      I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L
Sbjct: 61   KGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAAL 120

Query: 902  LQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLG 960
            + SL +  K A    K       ++F    +     + +          V  + E+  LG
Sbjct: 121  MNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLG 180

Query: 961  FYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
             Y +GHP++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T
Sbjct: 181  LYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICT 240

Query: 1020 FSEPAKEYEANFF 1032
              + +   E   F
Sbjct: 241  LDDRSGRLEVMLF 253


>gi|300900774|ref|ZP_07118920.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            198-1]
 gi|300355759|gb|EFJ71629.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            198-1]
          Length = 375

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/246 (31%), Positives = 117/246 (47%), Gaps = 4/246 (1%)

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTT 849
             MT +MDN EK+     +  +  ++I+PP +N+    F V D   I Y + AIKGVG   
Sbjct: 1    VMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGP 60

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
               I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL + 
Sbjct: 61   IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 120

Query: 909  QKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
             K A    K       ++F    +     + +          V  + E+  LG Y +GHP
Sbjct: 121  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 180

Query: 968  LDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            ++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + +  
Sbjct: 181  INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 240

Query: 1027 YEANFF 1032
             E   F
Sbjct: 241  LEVMLF 246


>gi|297517314|ref|ZP_06935700.1| DNA polymerase III subunit alpha [Escherichia coli OP50]
          Length = 376

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/246 (31%), Positives = 117/246 (47%), Gaps = 4/246 (1%)

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTT 849
             MT +MDN EK+     +  +  ++I+PP +N+    F V D   I Y + AIKGVG   
Sbjct: 2    VMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGP 61

Query: 850  ARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
               I+EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL + 
Sbjct: 62   IEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 121

Query: 909  QKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
             K A    K       ++F    +     + +          V  + E+  LG Y +GHP
Sbjct: 122  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 181

Query: 968  LDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            ++ Y   + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + +  
Sbjct: 182  INQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGR 241

Query: 1027 YEANFF 1032
             E   F
Sbjct: 242  LEVMLF 247


>gi|223036032|gb|ACM78669.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. PS0705-4B2]
          Length = 336

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 127/352 (36%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
               PA+A+TD  NL   ++F   A  +G++PIIG    +          Q       + 
Sbjct: 1   ELGMPAMALTDFTNLCGLVKFYGTAHGSGVKPIIGADFKM----------QSDEFGEELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL +   GY+ L  L+S+ YL    +    I  +WL E+ +EGLI+L+GG SG I R
Sbjct: 51  QVTLLAADNVGYKNLTLLISKAYLRGHVQHHPVIDKAWLAEM-SEGLIVLSGGKSGEIGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
                + Q+ +  +  +K+ F DR Y+ L R    D        V+LA   +LP+VATN 
Sbjct: 110 GLLKGNRQIVQGCVDFYKQHFPDRFYLELLRTGRPDEETYLHFAVELAEQQDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +FLS + ++AHD+ +A+     +    RP+  +P  YL+   EM  +F+D+PEALEN+V
Sbjct: 170 VVFLSPDLFDAHDIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEEMCELFADIPEALENSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +          +E   L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPAFPTEGMKETEFLVMKSREGLEERLEFLFPDEEERKR 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGS 336


>gi|223035992|gb|ACM78649.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. K0406-01S]
          Length = 336

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 126/352 (35%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
               PA+A+TD  NL   ++F   A  +G++PIIG    +          Q       + 
Sbjct: 1   ELGMPAMALTDFTNLCGLVKFYGTAHGSGVKPIIGADFKM----------QSDEFGEELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL +   GY+ L  L+S+ YL    +    I  +WL E+ +EGLI+L+GG SG I R
Sbjct: 51  QVTLLAADNVGYKNLTLLISKAYLRGHVQHYPVIDKAWLAEM-SEGLIVLSGGKSGEIGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
                + Q+ +  +  +K+ F DR Y+ L R    D        V+LA   +LP+VATN 
Sbjct: 110 GLLKGNRQIVQGCVDFYKQHFPDRFYLELLRTGRPDEETYLHFAVELAEQQDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +FLS + ++AH++ +A+     +    RP+  +P  YL+   EM  +F+D+PEALEN+V
Sbjct: 170 VVFLSPDLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEEMCELFADIPEALENSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +          +E   L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPAFPTEGMKETEFLVMKSREGLEERLEFLFPDEEERKR 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGS 336


>gi|186685733|ref|YP_001868929.1| DNA polymerase III subunit alpha [Nostoc punctiforme PCC 73102]
 gi|186468185|gb|ACC83986.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Nostoc punctiforme
            PCC 73102]
          Length = 450

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 82/291 (28%), Positives = 139/291 (47%), Gaps = 13/291 (4%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AY  ++YQTA++K +YP+E++AA +T    + +K++++  +     I 
Sbjct: 33   IASNCFNKSHSTAYGYVTYQTAYLKANYPLEYMAALLTANSGDTDKVQRYITNCTNMGIS 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDS 874
            I PP +N   VDF     +I +  +A++ VG      I+EA  +   F SL DFC RVD 
Sbjct: 93   IDPPDINRSGVDFTPTLGKILFGFSAVRNVGQNAIACILEARNETGEFKSLADFCDRVDL 152

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG-- 932
            + +NRR LESL++ GA D    +R QL+   + +  +AQ   K+R +   N+F       
Sbjct: 153  RAVNRRTLESLIYCGAFDKIESNRQQLINDSELVYDWAQSRAKDRASGQGNLFDLLGDGF 212

Query: 933  ----------TFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
                       F      +  +      + + E+ +LGFY S HPL   + I   +    
Sbjct: 213  SSTQNKRVNNAFETAPKSKPVTDLPPQKKLQMEKELLGFYVSDHPLKSLRQIAPLLTPIN 272

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              +         +    M+ + ++  T+KG ++  +   +   + EA  FP
Sbjct: 273  LSQLGEQREDTRLCAVVMLNNVKKVVTKKGDQMAILQIEDLTTQSEAVVFP 323


>gi|223036026|gb|ACM78666.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. PS0705-3A4]
          Length = 336

 Score =  255 bits (651), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 125/352 (35%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
               PA+A+TD  NL   ++F   A ++G++PIIG    +          Q       + 
Sbjct: 1   ELGMPAMALTDFTNLCGLVKFYGTAHSSGVKPIIGADFKM----------QSDEFGEELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL +   GY+ L  L+S+ YL    +    I  +WL E+ +EGLI+L+GG SG I R
Sbjct: 51  QVTLLAADNVGYKNLTLLISKAYLRGHVQHHPVIDKAWLAEM-SEGLIVLSGGKSGEIGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
                + Q+ +  +  +K+ F DR Y+ L R    D        V+LA   +LP+VATN 
Sbjct: 110 GLLKGNRQIVQGCVDFYKQHFPDRFYLELLRTGRPDEETYLHFAVELAEQQDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +FLS + ++AH++ +A+     +    RP+  +   YL+   EM  +F+D+PEALEN+V
Sbjct: 170 VVFLSPDLFDAHEIRVAIHDGYTLEDPRRPKNYSQQQYLRTEEEMCELFADIPEALENSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +          +E   L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPAFPTEGMKETEFLVMKSREGLEERLEFLFPDEEERKR 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGS 336


>gi|223035996|gb|ACM78651.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. K0706-35]
          Length = 336

 Score =  255 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 126/352 (35%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
               PA+A+TD  NL   ++F   A  +G++PIIG    +          Q       + 
Sbjct: 1   ELGMPAMALTDFTNLCGLVKFYGTAHGSGVKPIIGADFKM----------QSDEFGEELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL +   GY+ L  L+S+ YL    +    I  +WL E+ +EGLI+L+GG SG I R
Sbjct: 51  QVTLLAADNVGYKNLTLLISKAYLRGHVQHHPVIDKAWLAEM-SEGLIVLSGGKSGEIGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
                + Q+ +  +  +K+ F DR Y+ L R    D        V+LA   +LP+VATN 
Sbjct: 110 GLLKGNRQIVQGCVDFYKQHFPDRFYLELLRTGRPDEETYLHFAVELAEQQDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +FLS + ++AH++ +A+     +    RP+  +P  YL+   EM  +F+D+PEALEN+V
Sbjct: 170 VVFLSPDLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEEMCELFADIPEALENSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +          +E   L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPAFPTEGMKETEFLVMKSREGLEERLEFLFPDEEERKR 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGS 336


>gi|300932142|ref|ZP_07147425.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            187-1]
 gi|300460079|gb|EFK23572.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            187-1]
          Length = 378

 Score =  255 bits (650), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 76/242 (31%), Positives = 115/242 (47%), Gaps = 4/242 (1%)

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHI 853
            +MDN EK+     +  +  ++I+PP +N+    F V D   I Y + AIKGVG      I
Sbjct: 8    DMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAI 67

Query: 854  MEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            +EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K A
Sbjct: 68   IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA 127

Query: 913  QWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
                K       ++F    +     + +          V  + E+  LG Y +GHP++ Y
Sbjct: 128  DQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQY 187

Query: 972  KPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
               + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + +   E  
Sbjct: 188  LKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVM 247

Query: 1031 FF 1032
             F
Sbjct: 248  LF 249


>gi|330001696|ref|ZP_08304090.1| nucleic acid-binding domain protein [Klebsiella sp. MS 92-3]
 gi|328537572|gb|EGF63793.1| nucleic acid-binding domain protein [Klebsiella sp. MS 92-3]
          Length = 379

 Score =  254 bits (649), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 76/246 (30%), Positives = 116/246 (47%), Gaps = 4/246 (1%)

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTT 849
             MT +MDN EK+     +  +  ++I+PP +N+    F V D   I Y + AIKGVG   
Sbjct: 5    VMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGP 64

Query: 850  ARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
               I+EA  +   F  L D C+R D KKLNRRVLE L+ +GA D  G  R  L+ SL + 
Sbjct: 65   IEAIIEARNNGGYFRELFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDA 124

Query: 909  QKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
             K A    K       ++F    +     + +          V  + E+  LG Y +GHP
Sbjct: 125  LKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHP 184

Query: 968  LDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            ++ Y   + +  G    ++   T RG     A +V++ +   T++G+RIG  T  + +  
Sbjct: 185  INQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLDDRSGR 244

Query: 1027 YEANFF 1032
             E   F
Sbjct: 245  LEVMLF 250


>gi|300920130|ref|ZP_07136583.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            115-1]
 gi|300956069|ref|ZP_07168393.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            175-1]
 gi|300317063|gb|EFJ66847.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            175-1]
 gi|300412864|gb|EFJ96174.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            115-1]
          Length = 374

 Score =  254 bits (649), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 76/242 (31%), Positives = 115/242 (47%), Gaps = 4/242 (1%)

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHI 853
            +MDN EK+     +  +  ++I+PP +N+    F V D   I Y + AIKGVG      I
Sbjct: 4    DMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAI 63

Query: 854  MEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            +EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K A
Sbjct: 64   IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA 123

Query: 913  QWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
                K       ++F    +     + +          V  + E+  LG Y +GHP++ Y
Sbjct: 124  DQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQY 183

Query: 972  KPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
               + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + +   E  
Sbjct: 184  LKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVM 243

Query: 1031 FF 1032
             F
Sbjct: 244  LF 245


>gi|301025930|ref|ZP_07189416.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            69-1]
 gi|300395785|gb|EFJ79323.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            69-1]
          Length = 376

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 76/242 (31%), Positives = 115/242 (47%), Gaps = 4/242 (1%)

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHI 853
            +MDN EK+     +  +  ++I+PP +N+    F V D   I Y + AIKGVG      I
Sbjct: 6    DMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAI 65

Query: 854  MEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            +EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K A
Sbjct: 66   IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA 125

Query: 913  QWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
                K       ++F    +     + +          V  + E+  LG Y +GHP++ Y
Sbjct: 126  DQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQY 185

Query: 972  KPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
               + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + +   E  
Sbjct: 186  LKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVM 245

Query: 1031 FF 1032
             F
Sbjct: 246  LF 247


>gi|223035994|gb|ACM78650.1| DNA polymerase III holoenzyme alpha subunit [Vibrio sp. K0606-41]
          Length = 336

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 125/352 (35%), Positives = 187/352 (53%), Gaps = 21/352 (5%)

Query: 38  ADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
               PA+A+TD  NL   ++F   A  +G++PIIG    +          Q       + 
Sbjct: 1   ELGMPAMALTDFTNLCGLVKFYGTAHGSGVKPIIGADFKM----------QSDEFGEELT 50

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + LL +   GY+ L  L+S+ YL    +    I  +WL ++ +EGLI+L+GG SG I R
Sbjct: 51  QVTLLAADNVGYKNLTLLISKAYLRGHVQHHPVIDKAWLAKM-SEGLIVLSGGKSGEIGR 109

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNN 216
                + Q+ +  +  +K+ F DR Y+ L R    D        V+LA   +LP+VATN 
Sbjct: 110 GLLKGNRQIVQGCVDFYKQHFPDRFYLELLRTGRPDEETYLHFAVELAEQQDLPVVATNE 169

Query: 217 SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +FLS + ++AH++ +A+     +    RP+  +P  YL+   EM  +F+D+PEALEN+V
Sbjct: 170 VVFLSPDLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYLRTEEEMCELFADIPEALENSV 229

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGY 332
           EIA+RC+  +++       +          +E   L  K+  GLE RL         +  
Sbjct: 230 EIAKRCNVTVRLGE-----YFLPAFPTEGMKETEFLVMKSREGLEERLEFLFPDEEERKR 284

Query: 333 HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
              +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGAGS
Sbjct: 285 RRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGAGS 336


>gi|330721716|gb|EGG99713.1| DNA polymerase III alpha subunit [gamma proteobacterium IMCC2047]
          Length = 377

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 77/252 (30%), Positives = 123/252 (48%), Gaps = 9/252 (3%)

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVG 846
            +AA ++ +M N +K+    +D RQ  + I+ P VN     F V   +R+ Y L AIKG+G
Sbjct: 1    MAAVLSADMQNTDKVVILIEDCRQMELPIVLPDVNVSEYKFTVDLQDRVVYGLGAIKGLG 60

Query: 847  TTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I+EA      F  L DFC+RVD K++NRR LE+L+ +GA+D  G  R  L+   
Sbjct: 61   EGPVSAIIEARQQGGAFKDLFDFCARVDLKRVNRRALEALIRSGAMDKLGAHRAALMACQ 120

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT-----LEKFSVENSSVRFENEQRVLG 960
            D   K A+   KN+     ++F    G+ + +         +       VR + E+  LG
Sbjct: 121  DEAVKVAEQHVKNQNAGMMDMFGDMPGSVATQDEDVYANYARIKPWTDKVRLQAEKETLG 180

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTF 1020
             Y  GHP+D Y+  LR +         A+      ++A +VV+ +  K+++G  I +VT 
Sbjct: 181  LYLQGHPIDEYEAELRNIAKDPLVALQASKNDQ--KIAGLVVALRTMKSKRGDTIAFVTL 238

Query: 1021 SEPAKEYEANFF 1032
             +     E + F
Sbjct: 239  DDRTSRMEVSVF 250


>gi|300949782|ref|ZP_07163757.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            116-1]
 gi|300450847|gb|EFK14467.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            116-1]
          Length = 373

 Score =  254 bits (648), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 76/242 (31%), Positives = 115/242 (47%), Gaps = 4/242 (1%)

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHI 853
            +MDN EK+     +  +  ++I+PP +N+    F V D   I Y + AIKGVG      I
Sbjct: 3    DMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAI 62

Query: 854  MEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            +EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K A
Sbjct: 63   IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA 122

Query: 913  QWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
                K       ++F    +     + +          V  + E+  LG Y +GHP++ Y
Sbjct: 123  DQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQY 182

Query: 972  KPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
               + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + +   E  
Sbjct: 183  LKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVM 242

Query: 1031 FF 1032
             F
Sbjct: 243  LF 244


>gi|315300656|gb|EFU59883.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            16-3]
          Length = 374

 Score =  254 bits (648), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 76/242 (31%), Positives = 115/242 (47%), Gaps = 4/242 (1%)

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHI 853
            +MDN EK+     +  +  ++I+PP +N+    F V D   I Y + AIKGVG      I
Sbjct: 4    DMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAI 63

Query: 854  MEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            +EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K A
Sbjct: 64   IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA 123

Query: 913  QWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
                K       ++F    +     + +          V  + E+  LG Y +GHP++ Y
Sbjct: 124  DQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQY 183

Query: 972  KPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
               + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + +   E  
Sbjct: 184  LKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVM 243

Query: 1031 FF 1032
             F
Sbjct: 244  LF 245


>gi|300938593|ref|ZP_07153325.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            21-1]
 gi|301028679|ref|ZP_07191899.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            196-1]
 gi|299878278|gb|EFI86489.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            196-1]
 gi|300456439|gb|EFK19932.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            21-1]
 gi|315285284|gb|EFU44729.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            110-3]
          Length = 372

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 76/242 (31%), Positives = 115/242 (47%), Gaps = 4/242 (1%)

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHI 853
            +MDN EK+     +  +  ++I+PP +N+    F V D   I Y + AIKGVG      I
Sbjct: 2    DMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAI 61

Query: 854  MEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            +EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K A
Sbjct: 62   IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA 121

Query: 913  QWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
                K       ++F    +     + +          V  + E+  LG Y +GHP++ Y
Sbjct: 122  DQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQY 181

Query: 972  KPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
               + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + +   E  
Sbjct: 182  LKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVM 241

Query: 1031 FF 1032
             F
Sbjct: 242  LF 243


>gi|300990431|ref|ZP_07179199.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            200-1]
 gi|300305731|gb|EFJ60251.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            200-1]
          Length = 375

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 76/242 (31%), Positives = 115/242 (47%), Gaps = 4/242 (1%)

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHI 853
            +MDN EK+     +  +  ++I+PP +N+    F V D   I Y + AIKGVG      I
Sbjct: 5    DMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAI 64

Query: 854  MEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            +EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K A
Sbjct: 65   IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA 124

Query: 913  QWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
                K       ++F    +     + +          V  + E+  LG Y +GHP++ Y
Sbjct: 125  DQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQY 184

Query: 972  KPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
               + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + +   E  
Sbjct: 185  LKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVM 244

Query: 1031 FF 1032
             F
Sbjct: 245  LF 246


>gi|223930145|gb|ACN24719.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930148|gb|ACN24721.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930172|gb|ACN24737.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930220|gb|ACN24769.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930256|gb|ACN24793.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930259|gb|ACN24795.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930298|gb|ACN24821.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930328|gb|ACN24841.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930331|gb|ACN24843.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930334|gb|ACN24845.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930364|gb|ACN24865.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930397|gb|ACN24887.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930427|gb|ACN24907.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930430|gb|ACN24909.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930433|gb|ACN24911.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930436|gb|ACN24913.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930439|gb|ACN24915.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930442|gb|ACN24917.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930445|gb|ACN24919.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 115/349 (32%), Positives = 199/349 (57%), Gaps = 7/349 (2%)

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A
Sbjct: 1    GVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASA 60

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++ 
Sbjct: 61   NQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYI 120

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +A+ + I ++ PS+N     F++ +   I YS   I+ V T     I+      PF   
Sbjct: 121  TEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDF 180

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N
Sbjct: 181  FDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMN 238

Query: 926  IFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            +FA +       K    K +  +   + E E+   G Y S HP+  Y+  L+ + I    
Sbjct: 239  LFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLA 298

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +   G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 299  NLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|301330014|ref|ZP_07222701.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            78-1]
 gi|300843968|gb|EFK71728.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            78-1]
 gi|324008215|gb|EGB77434.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            57-2]
 gi|324014131|gb|EGB83350.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            60-1]
          Length = 374

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 76/242 (31%), Positives = 115/242 (47%), Gaps = 4/242 (1%)

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHI 853
            +MDN EK+     +  +  ++I+PP +N+    F V D   I Y + AIKGVG      I
Sbjct: 4    DMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAI 63

Query: 854  MEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            +EA      F  L D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K A
Sbjct: 64   IEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAA 123

Query: 913  QWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
                K       ++F    +     + +          V  + E+  LG Y +GHP++ Y
Sbjct: 124  DQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQY 183

Query: 972  KPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
               + +  G    ++   T RG  I  A +VV+ +   T++G+RIG  T  + +   E  
Sbjct: 184  LKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVM 243

Query: 1031 FF 1032
             F
Sbjct: 244  LF 245


>gi|223930109|gb|ACN24695.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930130|gb|ACN24709.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930166|gb|ACN24733.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930199|gb|ACN24755.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930205|gb|ACN24759.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930262|gb|ACN24797.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930322|gb|ACN24837.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930343|gb|ACN24851.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930373|gb|ACN24871.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930379|gb|ACN24875.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930409|gb|ACN24895.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930412|gb|ACN24897.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930418|gb|ACN24901.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930421|gb|ACN24903.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930424|gb|ACN24905.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930448|gb|ACN24921.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930466|gb|ACN24933.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 115/349 (32%), Positives = 199/349 (57%), Gaps = 7/349 (2%)

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A
Sbjct: 1    GVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASA 60

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++ 
Sbjct: 61   NQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYI 120

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +A+ + I ++ PS+N     F++ +   I YS   I+ V T     I+      PF   
Sbjct: 121  TEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDF 180

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N
Sbjct: 181  FDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMN 238

Query: 926  IFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            +FA +       K    K +  +   + E E+   G Y S HP+  Y+  L+ + I    
Sbjct: 239  LFAEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLA 298

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +   G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 299  NLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|222832232|gb|EEE70709.1| predicted protein [Populus trichocarpa]
          Length = 283

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 76/248 (30%), Positives = 114/248 (45%), Gaps = 3/248 (1%)

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVG 846
            +AA MT EMDN +KI  F  +  +  + I+PP +NT    F V DN  I Y + AIKGVG
Sbjct: 1    MAAVMTSEMDNTDKIVSFYDECLRMGLTIVPPDINTGKHHFSVNDNGEIVYGIGAIKGVG 60

Query: 847  TTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                  I+ A      F  L D C+RVD KK+NRR  E+L+ +GA D  G  R  L Q+L
Sbjct: 61   EVPINAIVSAREQGGIFKDLFDLCARVDLKKVNRRTFENLIKSGAFDKLGPHRAALAQNL 120

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFS 964
            ++  K +    K+      ++F     +  D +         +     + E+  LG Y S
Sbjct: 121  EDALKASDQHAKDEAIGQVDMFGVLTSSHEDVETAYAHTPRWSEKQILDGERETLGLYLS 180

Query: 965  GHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPA 1024
             HP+  Y   L         E     RG    +  ++V+ +   T+KG+R+G  T  + +
Sbjct: 181  SHPITRYLKELSHYSSTRLNELSPNTRGKISTVCGLIVALRFAVTKKGNRLGIATLDDRS 240

Query: 1025 KEYEANFF 1032
               +   F
Sbjct: 241  GLLDITLF 248


>gi|215428873|ref|ZP_03426792.1| error-prone DNA polymerase [Mycobacterium tuberculosis T92]
          Length = 380

 Score =  253 bits (647), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 80/336 (23%), Positives = 142/336 (42%), Gaps = 13/336 (3%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 42  SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 101

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ + G +L +        T + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 102 VRTVFGAELSL------GATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 155

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
              R     L E       +LTG   G + +A        A++ L      F   R+ + 
Sbjct: 156 GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 215

Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           L  H    D  R + +  LA    + +VAT  + F           + A+     +    
Sbjct: 216 LTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAA 275

Query: 245 RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                    +L++  EM  +F+  PEA+    E+  R +F LQ+ AP LP F   +    
Sbjct: 276 GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERWAFGLQLIAPRLPPFDVPDG--- 332

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
              E++ LR+  +AG   R      A   ++Q   +
Sbjct: 333 -HTEDSWLRSLVMAGARERYGPPKSAPRAYSQIEHE 367


>gi|223930112|gb|ACN24697.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930118|gb|ACN24701.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930124|gb|ACN24705.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930127|gb|ACN24707.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930133|gb|ACN24711.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930136|gb|ACN24713.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930139|gb|ACN24715.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930142|gb|ACN24717.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930151|gb|ACN24723.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930154|gb|ACN24725.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930160|gb|ACN24729.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930163|gb|ACN24731.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930169|gb|ACN24735.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930178|gb|ACN24741.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930181|gb|ACN24743.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930184|gb|ACN24745.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930187|gb|ACN24747.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930190|gb|ACN24749.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930196|gb|ACN24753.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930202|gb|ACN24757.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930214|gb|ACN24765.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930223|gb|ACN24771.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930226|gb|ACN24773.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930229|gb|ACN24775.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930232|gb|ACN24777.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930235|gb|ACN24779.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930238|gb|ACN24781.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930241|gb|ACN24783.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930244|gb|ACN24785.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930247|gb|ACN24787.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930250|gb|ACN24789.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930253|gb|ACN24791.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930265|gb|ACN24799.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930268|gb|ACN24801.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930271|gb|ACN24803.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930274|gb|ACN24805.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930277|gb|ACN24807.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930280|gb|ACN24809.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930289|gb|ACN24815.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930292|gb|ACN24817.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930295|gb|ACN24819.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930301|gb|ACN24823.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930304|gb|ACN24825.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930307|gb|ACN24827.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930310|gb|ACN24829.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930313|gb|ACN24831.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930319|gb|ACN24835.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930325|gb|ACN24839.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930337|gb|ACN24847.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930349|gb|ACN24855.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930355|gb|ACN24859.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930361|gb|ACN24863.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930367|gb|ACN24867.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930370|gb|ACN24869.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930376|gb|ACN24873.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930385|gb|ACN24879.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930388|gb|ACN24881.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930391|gb|ACN24883.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930415|gb|ACN24899.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930451|gb|ACN24923.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930454|gb|ACN24925.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930457|gb|ACN24927.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930463|gb|ACN24931.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930478|gb|ACN24941.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930481|gb|ACN24943.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  253 bits (647), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 115/349 (32%), Positives = 199/349 (57%), Gaps = 7/349 (2%)

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A
Sbjct: 1    GVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASA 60

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++ 
Sbjct: 61   NQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYI 120

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +A+ + I ++ PS+N     F++ +   I YS   I+ V T     I+      PF   
Sbjct: 121  TEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDF 180

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N
Sbjct: 181  FDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMN 238

Query: 926  IFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            +FA +       K    K +  +   + E E+   G Y S HP+  Y+  L+ + I    
Sbjct: 239  LFAEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLA 298

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +   G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 299  NLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|112961114|gb|ABI28176.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961117|gb|ABI28178.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961120|gb|ABI28180.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961123|gb|ABI28182.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961126|gb|ABI28184.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961129|gb|ABI28186.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961132|gb|ABI28188.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961135|gb|ABI28190.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961138|gb|ABI28192.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961141|gb|ABI28194.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961144|gb|ABI28196.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961147|gb|ABI28198.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961150|gb|ABI28200.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961153|gb|ABI28202.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961156|gb|ABI28204.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961159|gb|ABI28206.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961162|gb|ABI28208.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961165|gb|ABI28210.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961168|gb|ABI28212.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961171|gb|ABI28214.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961177|gb|ABI28218.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961183|gb|ABI28222.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961186|gb|ABI28224.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961189|gb|ABI28226.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961192|gb|ABI28228.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961195|gb|ABI28230.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961198|gb|ABI28232.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961201|gb|ABI28234.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961204|gb|ABI28236.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961207|gb|ABI28238.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961210|gb|ABI28240.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961213|gb|ABI28242.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961216|gb|ABI28244.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961219|gb|ABI28246.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961222|gb|ABI28248.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961225|gb|ABI28250.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961228|gb|ABI28252.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961231|gb|ABI28254.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961234|gb|ABI28256.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961237|gb|ABI28258.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961240|gb|ABI28260.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961243|gb|ABI28262.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961246|gb|ABI28264.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961249|gb|ABI28266.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961252|gb|ABI28268.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961255|gb|ABI28270.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961258|gb|ABI28272.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961261|gb|ABI28274.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961264|gb|ABI28276.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961267|gb|ABI28278.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961270|gb|ABI28280.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961273|gb|ABI28282.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961276|gb|ABI28284.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961279|gb|ABI28286.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961282|gb|ABI28288.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961285|gb|ABI28290.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961288|gb|ABI28292.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961291|gb|ABI28294.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961294|gb|ABI28296.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961297|gb|ABI28298.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
          Length = 454

 Score =  253 bits (647), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 113/345 (32%), Positives = 194/345 (56%), Gaps = 7/345 (2%)

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S   A  ++
Sbjct: 1    YQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSRGYSDASANQVY 60

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            +++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++  +A+
Sbjct: 61   DMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYITEAK 120

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
             + I ++ PS+N     F+V +   I YS   I+ V T     I+      PF    DFC
Sbjct: 121  NYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVPTKFILEIINERKKAPFRDFFDFC 180

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N+FA 
Sbjct: 181  ERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMNLFAE 238

Query: 930  EKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
            +       K    K +  +   + E E+   G Y S HP+  Y+  L+ + I       +
Sbjct: 239  DDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLANLSS 298

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 299  ---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 340


>gi|313892597|ref|ZP_07826184.1| DNA polymerase III, alpha subunit, Gram-positive type [Dialister
            microaerophilus UPII 345-E]
 gi|313118994|gb|EFR42199.1| DNA polymerase III, alpha subunit, Gram-positive type [Dialister
            microaerophilus UPII 345-E]
          Length = 1207

 Score =  253 bits (647), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 151/1000 (15%), Positives = 307/1000 (30%), Gaps = 218/1000 (21%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  S L+G +    I+        PA+AITD   + +  +  + A     + I 
Sbjct: 276  VELHLHTKMS-LDGLIDNEEIIKTAKEWNHPAVAITDHGVIQAFPKIQEIAAKYKQKVIY 334

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +       +             I++L     G + L  LV+  +L    ++   +
Sbjct: 335  GMEGYMIEN----IPEDVDADRQKYNHIIVLAKNMTGMRNLYRLVTISHLK-FFRKRPLM 389

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRA-FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              + L+E   EGL+  T   +G   RA     S +   KR   +        Y+ +Q   
Sbjct: 390  PKAILEEFH-EGLLYGTACVAGEFFRAVLNKESDEELIKRAKFYD-------YLEVQPVG 441

Query: 191  -----------------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
                                +    +++++     +P+ AT+++ ++ +E     ++L++
Sbjct: 442  NNAFMIKDDKYADVNSVEDLQRLNKRIIEIGEKANIPVCATSDAHYMFKEQSRKRELLLS 501

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            +   +  ++   P                      E +             ++  A    
Sbjct: 502  MWEKSGEAESHPPVYVRTTKEMLEDFNYLPEEKAKEIVITNTRKIADSCEWIEPLAEEWK 561

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             +  K         +++L +                     +  + RL+ EL  I R  +
Sbjct: 562  SYNPKI-----SGADDKLVDMCYENAYRIYGNPL------PKIVKDRLELELTPIIRHGY 610

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------- 399
               + I    ++ +      VG  RGS   S  A    IT+++PL               
Sbjct: 611  GVLYYIAHKLVKHSNDRGYLVG-SRGSVGSSFVATMAQITEVNPLEPHYVCLNCHWSHFY 669

Query: 400  ---------------------------FSLLFERFLNPDRMSMPDFDIDFCQ-DRRDEVI 431
                                        ++ F  FL  D   +PD D++F   D +    
Sbjct: 670  TDNSVGCGFDLPNKKCPKCGNELNKDGHNIPFAVFLGFDGDKVPDIDLNFSSGDDQAVAH 729

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +Y +  +G + V +  T   +Q + A   V +  +                         
Sbjct: 730  KYTEELFGRDNVFRAGTIAGIQDRTAFGLVKKYAEN------------------------ 765

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDV 549
                      R  + +   +  +S  + G+ R    H AGI++      +    P+    
Sbjct: 766  ----------RQLNVNDIFIESLSSDIVGVKRTTGQHPAGIMVCPRDMDIHNFTPLQYAA 815

Query: 550  RSDL-----------PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
                            +T           ++K D LG     +++     + Q    VD 
Sbjct: 816  NKKHEKDEDGNIIPGTITTHFDYHSISGRMLKLDILGHDDPKIIR-----MLQDITGVDP 870

Query: 599  SLIPFDDHETYHLLTTKGT---------------------LGIFQLESSGMRQALEGMQP 637
              IPF++ +   L                           +G+ +  +  +R  LE  +P
Sbjct: 871  LHIPFNEQKVLSLFQNTDALGISSEQLEKVIGHKGVKVGAIGLPEYGTPFVRVMLEDTKP 930

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
                +++ +                   N K+ I S    ++  +     ++ Y   +  
Sbjct: 931  KNFSELVRISGFSHG-------TDVWLNNAKDLITSGKVKLEEAISTRDDIMNYL--MKH 981

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
                L  +   E     + + K         +             +      F    K  
Sbjct: 982  GVDALISFKTMENVRKGKGLEKGNSNNEKYIR-------------EANVPEWFIQSCKKI 1028

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT------------------------ 793
             Y F +SHA AY +++++ AW K +YP+ F A+  T                        
Sbjct: 1029 SYLFPRSHAVAYVMMAFRIAWFKVYYPLAFYASYFTIRAEGSFNSLVILKGLEAQRKEIL 1088

Query: 794  ---------LEMDNVEKIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIK 843
                             + +   +      + +P S+      +FK+ D ++      I 
Sbjct: 1089 RISSLERPTNVDKENATVIEVAAEMYLRGYEFLPISLTESDAYEFKIVDGKLLPPFNCIP 1148

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
             +G   A+ I++A  + PF S ED   R    K+++ V+E
Sbjct: 1149 ALGNQVAKEIVQAREEAPFTSKEDLKKR---GKVSQSVIE 1185


>gi|223930157|gb|ACN24727.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 115/349 (32%), Positives = 199/349 (57%), Gaps = 7/349 (2%)

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A
Sbjct: 1    GVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASA 60

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++ 
Sbjct: 61   NQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYI 120

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +A+ + I ++ PS+N     F++ +   I YS   I+ V T     I+      PF   
Sbjct: 121  TEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDF 180

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N
Sbjct: 181  FDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMN 238

Query: 926  IFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            +FA +       K    K +  +   + E E+   G Y S HP+  Y+  L+ + I    
Sbjct: 239  LFAEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLA 298

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +   G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 299  NLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|289752087|ref|ZP_06511465.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           T92]
 gi|289692674|gb|EFD60103.1| DNA polymerase subunit III alpha dnaE2 [Mycobacterium tuberculosis
           T92]
          Length = 399

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/336 (23%), Positives = 142/336 (42%), Gaps = 13/336 (3%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
            S ++  L  HS+YS L+GA +   ++++ A     A+A+TD + L+ A+ F++ A    
Sbjct: 61  SSVAYAELHAHSAYSFLDGASTPEELVEEAARLGLCALALTDHDGLYGAVRFAEAAAELD 120

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           ++ + G +L +        T + + P P  P +++L    EGY+RL   ++  +L    K
Sbjct: 121 VRTVFGAELSL------GATARTERPDPPGPHLLVLARGPEGYRRLSRQLAAAHLAGGEK 174

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVN 185
              R     L E       +LTG   G + +A        A++ L      F   R+ + 
Sbjct: 175 GKPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIE 234

Query: 186 LQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
           L  H    D  R + +  LA    + +VAT  + F           + A+     +    
Sbjct: 235 LTHHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAA 294

Query: 245 RPRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                    +L++  EM  +F+  PEA+    E+  R +F LQ+ AP LP F   +    
Sbjct: 295 GWLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERWAFGLQLIAPRLPPFDVPDG--- 351

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
              E++ LR+  +AG   R      A   ++Q   +
Sbjct: 352 -HTEDSWLRSLVMAGARERYGPPKSAPRAYSQIEHE 386


>gi|329121280|ref|ZP_08249907.1| DNA-directed DNA polymerase III alpha subunit [Dialister
            micraerophilus DSM 19965]
 gi|327470214|gb|EGF15677.1| DNA-directed DNA polymerase III alpha subunit [Dialister
            micraerophilus DSM 19965]
          Length = 1207

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 151/1000 (15%), Positives = 307/1000 (30%), Gaps = 218/1000 (21%)

Query: 12   VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            V L +H+  S L+G +    I+        PA+AITD   + +  +  + A     + I 
Sbjct: 276  VELHLHTKMS-LDGLIDNEEIIKTAKEWNHPAVAITDHGVIQAFPKIQEIAAKYKQKVIY 334

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +       +             I++L     G + L  LV+  +L    ++   +
Sbjct: 335  GMEGYMIEN----IPEDVDADRQKYNHIIVLAKNMTGMRNLYRLVTISHLK-FFRKRPLM 389

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRA-FFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
              + L+E   EGL+  T   +G   RA     S +   KR   +        Y+ +Q   
Sbjct: 390  PKAILEEFH-EGLLYGTACVAGEFFRAVLNKESDEELIKRAKFYD-------YLEVQPVG 441

Query: 191  -----------------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
                                +    +++++     +P+ AT+++ ++ +E     ++L++
Sbjct: 442  NNAFMIKDDKYADVNSVEDLQKLNKRIIEIGEKANIPVCATSDAHYMFKEQSRKRELLLS 501

Query: 234  VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
            +   +  ++   P                      E +             ++  A    
Sbjct: 502  MWEKSGEAESHPPVYVRTTKEMLEDFNYLPEEKAKEIVITNTRKIADSCEWIEPLAEEWK 561

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
             +  K         +++L +                     +  + RL+ EL  I R  +
Sbjct: 562  SYNPKI-----SGADDKLVDMCYENAYRIYGNPL------PKIVKDRLELELTPIIRHGY 610

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------- 399
               + I    ++ +      VG  RGS   S  A    IT+++PL               
Sbjct: 611  GVLYYIAHKLVKHSNDRGYLVG-SRGSVGSSFVATMAQITEVNPLEPHYVCLNCHWSHFY 669

Query: 400  ---------------------------FSLLFERFLNPDRMSMPDFDIDFCQ-DRRDEVI 431
                                        ++ F  FL  D   +PD D++F   D +    
Sbjct: 670  TDNSVGCGFDLPNKKCPKCGNELNKDGHNIPFAVFLGFDGDKVPDIDLNFSSGDDQAVAH 729

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
            +Y +  +G + V +  T   +Q + A   V +  +                         
Sbjct: 730  KYTEELFGRDNVFRAGTIAGIQDRTAFGLVKKYAEN------------------------ 765

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDV 549
                      R  + +   +  +S  + G+ R    H AGI++      +    P+    
Sbjct: 766  ----------RQLNVNDIFIESLSSDIVGVKRTTGQHPAGIMVCPRDMDIHNFTPLQYAA 815

Query: 550  RSDL-----------PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
                            +T           ++K D LG     +++     + Q    VD 
Sbjct: 816  NKKHEKDEDGNIIPGTITTHFDYHSISGRMLKLDILGHDDPKIIR-----MLQDITGVDP 870

Query: 599  SLIPFDDHETYHLLTTKGT---------------------LGIFQLESSGMRQALEGMQP 637
              IPF++ +   L                           +G+ +  +  +R  LE  +P
Sbjct: 871  LHIPFNEQKVLSLFQNTDALGISSEQLEKVIGHKGVKVGAIGLPEYGTPFVRVMLEDTKP 930

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
                +++ +                   N K+ I S    ++  +     ++ Y   +  
Sbjct: 931  KNFSELVRISGFSHG-------TDVWLNNAKDLITSGKVKLEEAISTRDDIMNYL--MKH 981

Query: 698  IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFA 757
                L  +   E     + + K         +             +      F    K  
Sbjct: 982  GVDALVSFKTMENVRKGKGLEKGNSNNEKYIR-------------EANVPEWFIQSCKKI 1028

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT------------------------ 793
             Y F +SHA AY +++++ AW K +YP+ F A+  T                        
Sbjct: 1029 SYLFPRSHAVAYVMMAFRIAWFKVYYPLAFYASYFTIRAEGSFNSLVILKGLEAQRKEIL 1088

Query: 794  ---------LEMDNVEKIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIK 843
                             + +   +      + +P S+      +FK+ D ++      I 
Sbjct: 1089 RILSLERPTNVDKENATVIEVAAEMYLRGYEFLPISLTESDAYEFKIVDGKLLPPFNCIP 1148

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
             +G   A+ I++A  + PF S ED   R    K+++ V+E
Sbjct: 1149 ALGNQVAKEIVQAREEAPFTSKEDLKKR---GKVSQSVIE 1185


>gi|325661459|ref|ZP_08150085.1| hypothetical protein HMPREF0490_00819 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472408|gb|EGC75620.1| hypothetical protein HMPREF0490_00819 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 1106

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 195/979 (19%), Positives = 377/979 (38%), Gaps = 113/979 (11%)

Query: 15  QVHSSYSL----LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS---QKACAAGI 67
            +HS  S     ++     N  +D   +    A+A ++  +    LE+         AG+
Sbjct: 9   HLHSDLSNGVTNIDSVTKYNEYIDYAKSLGMKAMAFSEHGS---VLEWVHKKNAIEKAGM 65

Query: 68  QPIIGCQLDIDMQ------------------------DNLKMTNQGKTPFPTVPSIVLLV 103
           + I   +  +  +                        +  +     K         VL+ 
Sbjct: 66  KYIHAEEFYVTKELYQYPDDTELCESLLGTDPEEAQKEIEEFLEGNKFQVRDNYHCVLIA 125

Query: 104 STAEGYQRLIELVSRMYLLDQ-GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
              EG + +  L S+ ++ D       RI    L    ++ +++ T    G         
Sbjct: 126 KNYEGVKEINALSSKAFVRDGHFYYQPRITFEELINT-SDNILITTACIGGI----LASG 180

Query: 163 SSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLS 221
           +  + E  L    K   DR Y+ +Q H    +      + +++  + +PL+A  ++  L+
Sbjct: 181 TPDIQEDFLNFLIKN-KDRCYLEIQHHCDDMQIKYNQYLAKISTQYGIPLIAGTDTHALN 239

Query: 222 EEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
           +E    H    A+   +   Q D        +      +V+       A +  ++     
Sbjct: 240 DE----HMRGRAIMQRSKDVQFDSESAWDMTFKSYDELVVAYEKQFAIAKDVYLKAIEET 295

Query: 282 SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
           + I          +  K    +  +   E++ K   G++ R     I K  + ++Y+ R+
Sbjct: 296 NRIADRVEEFKLDYSYKY-PKLYDDSLTEIKKKIATGIKWR----GIDKKKNYKEYQDRV 350

Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
            +EL          + L+  D+    +KN +  G  RGS +GS+ AY L IT++DP+RF+
Sbjct: 351 VYELKTYIHNNALDFMLLEEDYKTELRKNGVKYGYSRGSVSGSLIAYLLGITEVDPIRFN 410

Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
           L FERF+N +R+S+ D D D+ ++ R +V +Y+ N+        IITF +++ K A++DV
Sbjct: 411 LNFERFMNEERVSLADIDSDWFKEDRWKVRQYLFNR-EKLHCCNIITFNTVKMKGAIKDV 469

Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
           GRAL M   +   L  L+  D       + + +  R +           L E    + G 
Sbjct: 470 GRALGMTPQETQLLSNLVQEDENK---HEFVDEKYRLQ--------YSELFEYVDIVVGT 518

Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
                 HAAG+V+   P+  +         + P++Q NMK I+    +K D LGL  + L
Sbjct: 519 ITSLGRHAAGLVVAPYPVDDVFGTLYISSDEKPISQINMKEIDSLNFVKLDVLGLDCVGL 578

Query: 582 LQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM------ 635
           + K+ + +      +    + F+D E +     K T  IFQ ES      L  +      
Sbjct: 579 IYKTCEAVG--IPFLTPDNLDFNDEEVWE-DIAKDTTLIFQFESDFAGSYLRDILRPQVI 635

Query: 636 --------QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
                       I+ +       RP                      +  ++  L  T G
Sbjct: 636 KKIKEKNPNLSYIDLMSMANGAIRPAGESYRTKLAAGIYRDN----GNDALNKFLAPTLG 691

Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-------------------IKEEMDKQ 728
            ++YQEQ+++      G+++ EAD++RR   KK                     ++ +  
Sbjct: 692 FLVYQEQIIEFLHRFCGFTMGEADIVRRHFSKKTGTETDIPIIKDGGYMNNIDGKKSEHY 751

Query: 729 KERFISGASKNG-----ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
            + FI     +       ++ I  +  +++   ++Y F+K+HA  Y+ + +   +++ +Y
Sbjct: 752 IKGFIKTMKDDYGVDQVDAEQIIESFLQVIIDASNYLFSKNHADPYSFLGFACGYLRHYY 811

Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC--VDFKVGDNRIYYSLAA 841
           P+E L  ++ +   + EK  K          +I P           F    N IY  +++
Sbjct: 812 PLETLTTALNIYASDDEKSLKIKDYIISKGYEIFPIQFRKSKAEYQFDKNSNSIYQGISS 871

Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK-KLNRRVLESLVFAGALDCFGYSRMQ 900
           IK      A  + E   +  +++  +    ++ K  +N + L  L        FG +   
Sbjct: 872 IKYCNEKIADELFELGKN-SYENFFELLFDINEKTSINSKQLMILTGLNFFKEFGEN-KY 929

Query: 901 LLQSLDNIQKYAQWVEKNR 919
           LL+ ++   K+A   + N+
Sbjct: 930 LLKLIEYFDKFAFKKQINK 948


>gi|223930394|gb|ACN24885.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 115/349 (32%), Positives = 199/349 (57%), Gaps = 7/349 (2%)

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A
Sbjct: 1    GVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASA 60

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++ 
Sbjct: 61   NQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYI 120

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +A+ + I ++ PS+N     F++ +   I YS   I+ V T     I+      PF   
Sbjct: 121  TEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDF 180

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N
Sbjct: 181  FDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMN 238

Query: 926  IFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            +FA +       K    K +  +   + E E+   G Y S HP+  Y+  L+ + I    
Sbjct: 239  LFAEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLA 298

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +   G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 299  NLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|223930211|gb|ACN24763.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 115/349 (32%), Positives = 199/349 (57%), Gaps = 7/349 (2%)

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A
Sbjct: 1    GVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASA 60

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++ 
Sbjct: 61   NQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYI 120

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +A+ + I ++ PS+N     F++ +   I YS   I+ V T     I+      PF   
Sbjct: 121  TEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDF 180

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N
Sbjct: 181  FDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMN 238

Query: 926  IFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            +FA +       K    K +  +   + E E+   G Y S HP+  Y+  L+ + I    
Sbjct: 239  LFAEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLA 298

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +   G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 299  NLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|223930400|gb|ACN24889.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930403|gb|ACN24891.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 115/349 (32%), Positives = 199/349 (57%), Gaps = 7/349 (2%)

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A
Sbjct: 1    GVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASA 60

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++ 
Sbjct: 61   NQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYI 120

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +A+ + I ++ PS+N     F++ +   I YS   I+ V T     I+      PF   
Sbjct: 121  TEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDF 180

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N
Sbjct: 181  FDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMN 238

Query: 926  IFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            +FA +       K    K +  +   + E E+   G Y S HP+  Y+  L+ + I    
Sbjct: 239  LFAEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLA 298

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +   G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 299  NLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|223930175|gb|ACN24739.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 115/349 (32%), Positives = 199/349 (57%), Gaps = 7/349 (2%)

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A
Sbjct: 1    GVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASA 60

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++ 
Sbjct: 61   NQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYI 120

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +A+ + I ++ PS+N     F++ +   I YS   I+ V T     I+      PF   
Sbjct: 121  TEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDF 180

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N
Sbjct: 181  FDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDVVLQYISLLGED--SKGMN 238

Query: 926  IFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            +FA +       K    K +  +   + E E+   G Y S HP+  Y+  L+ + I    
Sbjct: 239  LFAEDDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLA 298

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +   G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 299  NLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|223930121|gb|ACN24703.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930193|gb|ACN24751.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930208|gb|ACN24761.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930217|gb|ACN24767.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930283|gb|ACN24811.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930286|gb|ACN24813.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930316|gb|ACN24833.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930340|gb|ACN24849.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930346|gb|ACN24853.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930352|gb|ACN24857.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930358|gb|ACN24861.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930382|gb|ACN24877.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930460|gb|ACN24929.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930469|gb|ACN24935.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930472|gb|ACN24937.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930475|gb|ACN24939.1| hypothetical protein lmo1574 [Listeria monocytogenes]
 gi|223930484|gb|ACN24945.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 115/349 (32%), Positives = 199/349 (57%), Gaps = 7/349 (2%)

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A
Sbjct: 1    GVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASA 60

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++ 
Sbjct: 61   NQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYI 120

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +A+ + I ++ PS+N     F++ +   I YS   I+ V T     I+      PF   
Sbjct: 121  TEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKAPFRDF 180

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N
Sbjct: 181  FDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMN 238

Query: 926  IFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            +FA +       K    K +  +   + E E+   G Y S HP+  Y+  L+ + I    
Sbjct: 239  LFAEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLA 298

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +   G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 299  NLFS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|23321267|gb|AAN23128.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 316

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 107/332 (32%), Positives = 168/332 (50%), Gaps = 21/332 (6%)

Query: 37  AADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTV 96
           AA   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     +
Sbjct: 1   AAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDEL 50

Query: 97  PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
             + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG + 
Sbjct: 51  TKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEVG 109

Query: 157 RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATN 215
           RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN
Sbjct: 110 RALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATN 169

Query: 216 NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENT 274
             +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+
Sbjct: 170 EVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANS 229

Query: 275 VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKG 331
           VEIA+RC+  +++       +            E+ L  K+  GLE RL         + 
Sbjct: 230 VEIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRA 284

Query: 332 YHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               +Y +RL  EL+VI +M F GYFLIV +F
Sbjct: 285 KRRPEYDERLQVELDVINQMGFPGYFLIVMEF 316


>gi|223930115|gb|ACN24699.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 115/349 (32%), Positives = 199/349 (57%), Gaps = 7/349 (2%)

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A
Sbjct: 1    GVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASA 60

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++ 
Sbjct: 61   NQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYI 120

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +A+ + I ++ PS+N     F++ +   I YS   I+ V T     I+      PF   
Sbjct: 121  TEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKVPFRDF 180

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DFC R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N
Sbjct: 181  FDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMN 238

Query: 926  IFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            +FA +       K    K +  +   + E E+   G Y S HP+  Y+  L+ + I    
Sbjct: 239  LFAEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLA 298

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +   G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 299  NLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|253682892|ref|ZP_04863680.1| DNA Polymerase III alpha chain [Clostridium phage D-1873]
 gi|253560906|gb|EES90367.1| DNA Polymerase III alpha chain [Clostridium phage D-1873]
          Length = 810

 Score =  252 bits (643), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 132/834 (15%), Positives = 309/834 (37%), Gaps = 67/834 (8%)

Query: 15  QVHSSYSLL---EGALSLNNILDKIAADQQPAIAITDTNNLFS--ALEFSQKACAAGIQP 69
             H+ YS L   +      + + +           T+    +    LE         ++ 
Sbjct: 7   HKHTHYSNLRTIDVITKPIDYIKRAKELGHNTYFTTEHG--WGGNVLEAYTLCKENNLKM 64

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I G +            +       +   I+L+    +G++ +  ++S   L        
Sbjct: 65  IFGVEAY--------YVDNRLEKDRSNNHIILIALNRDGFKDINRIISEANL-SGYYYKP 115

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
           RI    +  +  + +I+ T   +G   R F     +  EK ++     F D  Y+ +Q H
Sbjct: 116 RIDKELILSLNPKNVIVTTACIAG---RLFKTKDYE--EKFVIPLLNHFKDHFYLEVQSH 170

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
           +    Y   Q+++L + + L L+  N+S ++   D +  D+ +        ++       
Sbjct: 171 KQQSEY-NKQILELKFKYNLSLIHANDSHYIHSRDAKYRDMFL-------KAKGIIYEDE 222

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
               L   +    +     + + N  +I    +  L        +F ++       ++++
Sbjct: 223 GGFILDYPNYDEIVERYEKQGVLNKEQIQESLNNTLIFDKCEDLKFDKEIKIPKVHKDKD 282

Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
             +            +          +Y + +  E++++ +     YF++  + ++ A  
Sbjct: 283 SNKLLKTIISNEWKKERNNICRDKWNEYEKAIKEEVDIVQKTNMEDYFILDYEIVKKAVD 342

Query: 370 NNI--PVGPGRGSGAGSVTAYALTITDID--PLRFSLLFERFLNPDR----MSMPDFDID 421
                    GRGS         L  T+ID      +L   RF++  R     S+PD D++
Sbjct: 343 EYKAVLTRTGRGSAPSFYINKLLGFTNIDRVSAPITLYPTRFMSTTRILQTRSLPDIDLN 402

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
                 + VI+  ++  G + V  +I +  LQ  +A R   ++     ++ + + K + +
Sbjct: 403 --WANIEPVIKSSKDILGEDGVYFMIAYKPLQNSSAFRLWCKSKGFNINEYNEIAKNLDD 460

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                   + I +   FR                          +      ++ D+P+S+
Sbjct: 461 YIEDEKWGKIIEESKIFRGVIE--------------------SVAPSPCSFLLLDKPISE 500

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            + + +    +      +    ++   +K D+L +   +++ K  + + +  +     L 
Sbjct: 501 EIGLIK--VGNQICCCLDGYNCDQYKYLKNDYLTVSVWSIISKVYEMIRE-PIDTIQQLE 557

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
              D++ ++L     T  + Q +S+     ++   P  I +I A V+  RPG    +  +
Sbjct: 558 NKVDYKVWNLYKLGLTATLNQADSNYATPLIKKYSPKSIAEISAWVASIRPGFASLMSNF 617

Query: 662 NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS-EADVLRRAMGKK 720
                 ++   +    +D +L+++   ++YQE +M+    L          + + A  K 
Sbjct: 618 LE----RKPYTTGVKELDNLLQDSYHYMMYQESIMKYLVWLGIAEDETYGIIKKIAKKKF 673

Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
            ++E++  KE+ + G  KN   K    N ++++   + Y FN SH+ +  + S   A++K
Sbjct: 674 KEKELEALKEKLLKGWIKNVGKKEGFENTWQVVNDASKYSFNASHSLSVGIDSLYGAYLK 733

Query: 781 THYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
            +YP+E+    + +   + E+  K   +   FNI I+ P       ++     +
Sbjct: 734 ANYPLEYYTVVLNMYEGDTEETSKIVDELNYFNITILSPKFRYSKSEYMCDKEQ 787


>gi|291037377|ref|ZP_06568341.1| DNA polymerase III, alpha subunit [Gluconacetobacter xylinus NBRC
            3288]
          Length = 444

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 94/386 (24%), Positives = 171/386 (44%), Gaps = 25/386 (6%)

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +  Y  R+ G+EK +   P ++ +L++T G+ ++QEQVMQ+A + +G+S SEAD LRRA
Sbjct: 1    MVHPYLRRRAGQEKEIYPTPELEKVLRKTLGIPLFQEQVMQVAMVCAGFSASEADQLRRA 60

Query: 717  MGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
            M        + + + R I G +  G  +T A  IF+ L  F  YGF +SHAA++A+++Y 
Sbjct: 61   MATFKNTGTVSRFRTRLIEGMTARGYPETFAKRIFQQLEGFGSYGFPESHAASFAILAYS 120

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-- 833
            ++WMK  +P  FLAA +  +        +  +DAR+  ++I P  +N    D        
Sbjct: 121  SSWMKCTHPDVFLAALLNSQPMGFYAPAQLVRDAREHGVEIRPVCINASRWDSTPEGPER 180

Query: 834  -----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
                  +   +  +KG+    A  I+ A  D+PF S++D   R   K      L  L  A
Sbjct: 181  DDGLFAVRLGMNLVKGLANEDAARIVAARGDRPFASVDDLWRRAGVKG---AALTHLAEA 237

Query: 889  GALD-CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
             A     G +R + L ++  ++                +FA        +          
Sbjct: 238  DAFRPGLGLARREALWAIKALRDE-----------PLPLFAAAAVVREAEEPDVLLQPMR 286

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
                   +    G     HP+   +P L + G+    ++      +++ +A +V+ +Q+ 
Sbjct: 287  DGAEVARDYNRTGLTLRDHPVAFLRPDLIERGMVTCRQAFEARDRSSLSVAGLVLVRQRP 346

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFFP 1033
             + +G  + ++T  +         +P
Sbjct: 347  GSAEG--VVFMTLEDETAAINVIIWP 370


>gi|321309589|ref|YP_004191918.1| DNA polymerase III subunit alpha [Mycoplasma haemofelis str.
           Langford 1]
 gi|319801433|emb|CBY92079.1| DNA polymerase III, alpha subunit [Mycoplasma haemofelis str.
           Langford 1]
          Length = 925

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 233/970 (24%), Positives = 415/970 (42%), Gaps = 158/970 (16%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQP-AIAITDTNNLFSALEFSQKAC 63
           +   P    L V S+++ L+  L + +ILD   +     A+ ITD  N ++ + F +   
Sbjct: 1   MYHPP----LFVRSNFTFLKSTLRIEDILDFSLSKGYKHAL-ITDFKNSYAWVNFYKSCR 55

Query: 64  AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
             G++PI G +++                      ++L+     GY+ LI   +      
Sbjct: 56  KNGLKPIFGLEVNYLNSI-----------------VLLIAFNKTGYENLIRTSTYG---- 94

Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                       L     EG++++     G +                 T  +      Y
Sbjct: 95  ------------LSPHHLEGIVVI--HLDGEV-----------------TLSEH--SHFY 121

Query: 184 VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
                              +A + E   V    + FL++EDYE   +L ++ + +++S++
Sbjct: 122 -------------------MANSEEPNGVYVQENKFLNKEDYEFFCLLRSIENQSLLSEE 162

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
                       N+       S     ++N  +I   C            +F     + +
Sbjct: 163 LELNRHFADDYLNKECPYDENSH---LVKNIYQILDLCQDYEIFDNSGKLQFFRNSNETL 219

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
           ++  +  L+       E              + YR+RLD EL+V+ +  F+ YFLIV + 
Sbjct: 220 RQLSDLALKRLTFDSDESF------------RIYRERLDLELSVVIQKGFADYFLIVQEA 267

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           + WAK N+I +GPGRGS  GS+ AY L IT++DP+++ L FERFLNP+R  +PD DID  
Sbjct: 268 VSWAKNNDICIGPGRGSVCGSLLAYVLGITEVDPIKYELYFERFLNPEREIIPDIDIDIS 327

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            ++R  ++ +++++YG + V+ IITF + ++K ++R++ R+  +P  +VD   +   +  
Sbjct: 328 NNKRHLLLEHLRDRYGSDHVSLIITFSTFKSKNSVREIARSFGLPKEKVDSANENNFSHK 387

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
              +  + +                              +++S HAAG++I   PLS LV
Sbjct: 388 QKELLNRILD---------------------------FPKNSSIHAAGVIISSTPLSSLV 420

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS-LIP 602
           P+     S L VTQ+    +++  LIKFDFL L  L+++ + ++ +            I 
Sbjct: 421 PLISKENS-LNVTQWEADDLKELNLIKFDFLALHHLSVMDEIVNNIEDDLDLDLDWSSID 479

Query: 603 FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +D + Y LL +  T  IFQ +S  +++ ++  +P  + D+  L +++RPG  D I    
Sbjct: 480 ENDPKVYELLISGKTSFIFQFDSPKIKELIQKFKPSSLLDLALLSAIHRPGASDQIPALL 539

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
           NRK    +  S+    +  L +T G+IIYQEQVMQI   ++      +D  RR +    K
Sbjct: 540 NRKFSNSQKDSLPEPFNSRLGDTYGLIIYQEQVMQIISQITSSHFGYSDNFRRNLSDPNK 599

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             +++  + F     KNG S+     I+  ++KFA YGFNKSHA AYA+ISY+  W+KT+
Sbjct: 600 --IEECSKTFFERGLKNGYSEKDLNLIWSYISKFASYGFNKSHAVAYAIISYRLLWLKTY 657

Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAI 842
           YP  F    +    D  +  + F +          P    +   +F   +N IY+ L+ I
Sbjct: 658 YPQYFYKEIL----DFSDSAECFSEIQSSGFNFQYPKLGTSLLKEFFFSNNSIYFPLSRI 713

Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
             +  +      E    K +DS+ D    + S K+++  L  L+  G      +      
Sbjct: 714 VKLSPSFFEKFPE---GKRYDSVLDALKHLVSLKISKEDLLILIRIGFFQSKEHP---HF 767

Query: 903 Q--SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV-- 958
              +LD +  ++ +V ++     +++F                S    +   + E R   
Sbjct: 768 WASNLDEVHSFSLFVREDN----QSLFDL------------NLSDVEITDEIKKEYRAYP 811

Query: 959 ---LGFYFSG 965
              LG     
Sbjct: 812 PKYLGIDLDR 821


>gi|112961174|gb|ABI28216.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112961180|gb|ABI28220.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
          Length = 454

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 113/345 (32%), Positives = 194/345 (56%), Gaps = 7/345 (2%)

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S   A  ++
Sbjct: 1    YQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSRGYSDASANQVY 60

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            +++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++  +A+
Sbjct: 61   DMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYITEAK 120

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
             + I ++ PS+N     F+V +   I YS   I+ V T     I+      PF    DFC
Sbjct: 121  NYGISMLAPSINHSNYYFQVENESSIRYSFRVIRKVLTKFILEIINERKKAPFRDFFDFC 180

Query: 870  SRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
             R+  K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N+FA 
Sbjct: 181  ERMPHKMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMNLFAE 238

Query: 930  EKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA 988
            +       K    K +  +   + E E+   G Y S HP+  Y+  L+ + I       +
Sbjct: 239  DDDFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLANLSS 298

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 299  ---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 340


>gi|330971219|gb|EGH71285.1| error-prone DNA polymerase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 520

 Score =  251 bits (640), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 153/548 (27%), Positives = 255/548 (46%), Gaps = 32/548 (5%)

Query: 97  PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIML-TGGSSGPI 155
           P +VLLV    GY+ L +L++        K   R+      E   +GL+ L      G  
Sbjct: 1   PKVVLLVENQAGYEALCKLITVARRR-ARKGEYRLLREDF-EPAPDGLLALWLPDLDGDA 58

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-RYRESQVVQLAYTHELPLVAT 214
                              ++ F +RL++ +  HRG D   R + ++ LA +  +P VA+
Sbjct: 59  QACLAGGR---------WLRERFAERLWLGVGLHRGPDDEQRLADLLALAQSLGIPAVAS 109

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQ-KDRPRVTPDHYLKNRSEMVSIFSDLPEALEN 273
            +    +       D + A+ H T V++         + +L+    +   + D   A   
Sbjct: 110 GDVHMHARGRRALQDTMTAIRHHTTVAEAGHLLFANGERHLRPLDALSEHYPDWLLA--E 167

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +V IARRC+F L       P  +  +     +   + LR     G+  R   G       
Sbjct: 168 SVRIARRCTFDLGDLKYEYPHELVPKG----QTSTSWLRELTERGVRRRWPGGL------ 217

Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
               R +++ EL +IA  KF  YFL V D +++A+  +I    GRGS A S   YAL IT
Sbjct: 218 TPATRAQVEKELALIAEKKFDSYFLTVHDIVEFARSQHIL-CQGRGSAANSAVCYALGIT 276

Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
           +++P + +LLFERF++ +R   PD D+DF  DRR+EVI+Y+  +YG  R A      +  
Sbjct: 277 ELNPEQSNLLFERFISRERNEPPDIDVDFEHDRREEVIQYIFRRYGRGRAALTAVASTYH 336

Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
              A+RDV + L +P  Q++ L +          S + + +           P + R+L 
Sbjct: 337 GSGAMRDVAKVLGLPPDQINALAEAFSRWSDSLPSPERLREY----GFDADTPILKRVLA 392

Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
           ++ +L G  RH S H  G VI + PL  LVP+     +D  + Q++   ++  GL+K D 
Sbjct: 393 LTGELIGFPRHLSQHPGGFVISEHPLETLVPVENAAMADRTIIQWDKDDLDLVGLLKVDI 452

Query: 574 LGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
           L L  L+ L+++ D +   RG +  L+ +P DD +TY +++   T+G+FQ+ES      L
Sbjct: 453 LALGMLSALRRTFDLVHLHRGQRWTLATLPGDDRKTYEMISRADTIGVFQIESRAQMAML 512

Query: 633 EGMQPDCI 640
             ++P+  
Sbjct: 513 PRLRPEKF 520


>gi|284928952|ref|YP_003421474.1| DNA polymerase III subunit alpha [cyanobacterium UCYN-A]
 gi|284809411|gb|ADB95116.1| DNA polymerase III, alpha subunit [cyanobacterium UCYN-A]
          Length = 450

 Score =  250 bits (639), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 86/289 (29%), Positives = 158/289 (54%), Gaps = 11/289 (3%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
             A   FNKSH+ AYA I+YQTA++K +YPVE++AA +T   DN +KI+K+ ++ ++  IQ
Sbjct: 33   IASNCFNKSHSTAYAYITYQTAYLKANYPVEYMAALLTANSDNQDKIEKYRENCQKMGIQ 92

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS--ADKPFDSLEDFCSRVD 873
            ++PP ++    DF   +N+I + L+A++ +G      I++A    +  F+SL DFCS  D
Sbjct: 93   VLPPDISLSLKDFTPLENQILFGLSAVRNLGEGAIDSILKARIQLNTKFNSLADFCSNTD 152

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA----- 928
            S+ +N+R LE+L+++GA D    +R QL+  LD +  +AQ   K++ +   N+F      
Sbjct: 153  SRTVNKRALETLIYSGAFDSVSNNRKQLINDLDLVISWAQKKAKDKESGQLNLFDLITNN 212

Query: 929  ----HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
                +    + D  +       +   + + E+  LGFY S HPL + +  +  +    ++
Sbjct: 213  ADNSNLDLEYEDVPSSPSVEDFSLQDKLKFEKEYLGFYISEHPLRIIEEPVSILSPVSFD 272

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            E +      NI + + +   ++  T+KG ++ ++   + ++  E   FP
Sbjct: 273  EIIVQKAKRNITILSTIAEIKEYTTKKGDQMAFLVLEDTSRHIEGVCFP 321


>gi|324017849|gb|EGB87068.1| OB-fold nucleic acid binding domain protein [Escherichia coli MS
            117-3]
          Length = 358

 Score =  250 bits (638), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 108/229 (47%), Gaps = 4/229 (1%)

Query: 808  DARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSL 865
            +  +  ++I+PP +N+    F V D   I Y + AIKGVG      I+EA      F  L
Sbjct: 1    ECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFREL 60

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             D C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K A    K       +
Sbjct: 61   FDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQAD 120

Query: 926  IFA-HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGY 983
            +F    +     + +          V  + E+  LG Y +GHP++ Y   + +  G    
Sbjct: 121  MFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRL 180

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++   T RG  I  A +VV+ +   T++G+RIG  T  + +   E   F
Sbjct: 181  KDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVMLF 229


>gi|254716292|ref|ZP_05178103.1| error-prone DNA polymerase [Brucella ceti M13/05/1]
          Length = 471

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 90/409 (22%), Positives = 167/409 (40%), Gaps = 32/409 (7%)

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP----------LIDPMLKETQGVII 690
             D++  V++ RPGPI   +V+   +    +     P           +  +L +T+GV +
Sbjct: 1    YDLVIEVAIVRPGPIQGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPL 60

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNI 749
            +QEQ M+IA   + ++  EA+ LRRAM    K   +   +++ I G    G  +T A N 
Sbjct: 61   FQEQAMRIAMEAAKFTPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENC 120

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            F  +  F +YGF +SHAA++A + Y +AW+K H+P  F AA +  +        +  +DA
Sbjct: 121  FNQIKGFGEYGFPESHAASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDA 180

Query: 810  RQFNIQIMPPSVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
            R+  + ++P  VN    D  + +       +      I G        ++    + P+ +
Sbjct: 181  REHGVTVLPVDVNFSQWDNILEETPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRT 239

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHE 924
            +ED   R+   +L+RR    L  A A       R   L ++  +            ++  
Sbjct: 240  IEDMHRRL---RLDRRAFTLLADADAFGSLDIDRRAALWAVRRL----------PNDETL 286

Query: 925  NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
             +F     +   +    K     +S     +         GHPL   +  L   G+    
Sbjct: 287  PLFRAAAASELAQEPRTKLPEMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCR 346

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   G  +++A +V  +Q+  + KG  + ++T  +         +P
Sbjct: 347  AVQEGADGRRMKVAGVVTVRQRPGSAKG--VVFLTIEDETGIANIVIWP 393


>gi|325663118|ref|ZP_08151568.1| hypothetical protein HMPREF0490_02309 [Lachnospiraceae bacterium
            4_1_37FAA]
 gi|325470572|gb|EGC73802.1| hypothetical protein HMPREF0490_02309 [Lachnospiraceae bacterium
            4_1_37FAA]
          Length = 429

 Score =  248 bits (634), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 91/295 (30%), Positives = 137/295 (46%), Gaps = 12/295 (4%)

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
            E +        + SHAAAYAV+SYQTA++K +YP+EF+AA MT  ++N  K+ ++   AR
Sbjct: 9    EKMEIIPKSYLSVSHAAAYAVVSYQTAYLKYYYPIEFMAALMTSVIENPTKVSEYIYAAR 68

Query: 811  QFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM-EASADKPFDSLEDFC 869
            Q  I+I+PP +N     F V +  I Y LAAIK +G      I+ E   +  +  L+DF 
Sbjct: 69   QMGIKILPPDINRGVSGFSVDEGNIRYGLAAIKSIGKPVIEAIVSEREENGLYRGLKDFI 128

Query: 870  SRVDSKK-LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
             R+  K+ LN+R +E+ + AGALD  G +R Q +     I       +K   +   ++F 
Sbjct: 129  ERISLKEMLNKRSIENFIKAGALDNLGGTRKQFMMIYIQIVDNVNQEKKFSMSGQMSLFD 188

Query: 929  --HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES 986
               E      +I L              E+ VLG Y SGHPLD Y+   +K       + 
Sbjct: 189  FVDEDQKKEFEIQLPDVGEYEKETLLAFEKEVLGVYISGHPLDAYEEQWKKSVSATTLDF 248

Query: 987  V--------ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                         G    +  M+V K  K T+    + ++T  +     E   FP
Sbjct: 249  QLDEETNRTKVHDGAKEIIGGMIVGKTIKHTKTNQMMAFITVEDLLGTVEVVVFP 303


>gi|223930406|gb|ACN24893.1| hypothetical protein lmo1574 [Listeria monocytogenes]
          Length = 458

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 114/349 (32%), Positives = 198/349 (56%), Gaps = 7/349 (2%)

Query: 687  GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S+  A
Sbjct: 1    GVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSKGYSEASA 60

Query: 747  VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC 806
              +++++ +FA+YGFN+SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++ 
Sbjct: 61   NQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYI 120

Query: 807  QDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +A+ + I ++ PS+N     F++ +   I YS   I+ V T     I+      PF   
Sbjct: 121  TEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRVIRKVPTKFILEIINERKKVPFRDF 180

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
             DFC R+  K L+  VLE+LVF+G  D FG  R  +  ++D + +Y   + ++  +K  N
Sbjct: 181  FDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATISATIDAVLQYISLLGED--SKGMN 238

Query: 926  IFAHEKGTFSD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYE 984
            +FA +       K    K +  +   + E E+   G Y S HP+  Y+  L+ + I    
Sbjct: 239  LFAEDDEFLKKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLA 298

Query: 985  ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +   G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 299  NLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 344


>gi|307327094|ref|ZP_07606283.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113]
 gi|306887175|gb|EFN18172.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113]
          Length = 408

 Score =  248 bits (633), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 133/290 (45%), Gaps = 13/290 (4%)

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA Y +NK+HAAAYA++SY TA++K +YP E++AA +T   D+ +K   +  + R+  I+
Sbjct: 3    FAGYAYNKAHAAAYALVSYWTAYLKANYPAEYMAALLTSVRDDKDKSAVYLNECRRMGIK 62

Query: 816  IMPPSVNTPCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVD 873
            ++PP+VN    +F   GD+ I + L A++ VG      I+        + S  D+  + +
Sbjct: 63   VLPPNVNESEANFTAQGDDVILFGLTAVRNVGQNVVEAIIRGRKAKGKYASFPDYLDKAE 122

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGT 933
            +   N+R  ESL+ AGA D  G++R  L    + +      V++       ++F    G 
Sbjct: 123  AVVCNKRTTESLIKAGAFDEMGHTRKGLTAHYEALIDNVVAVKRKEAEGQFDLFGGMAGD 182

Query: 934  FSD--------KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEE 985
              D         +          +     E+ +LG Y S HPL   + +L         +
Sbjct: 183  GGDGEGPGFGLDVEFSDV-EWEKTYLLAQEREMLGLYVSDHPLLGLEQLLAGTADATVAQ 241

Query: 986  SV--ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                    G  + +  ++   Q+K T++G+     T  + A   E  FFP
Sbjct: 242  LTGGDFADGAIVTVGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFP 291


>gi|119512954|ref|ZP_01632016.1| DNA polymerase III subunit alpha [Nodularia spumigena CCY9414]
 gi|119462407|gb|EAW43382.1| DNA polymerase III subunit alpha [Nodularia spumigena CCY9414]
          Length = 448

 Score =  247 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 81/300 (27%), Positives = 136/300 (45%), Gaps = 11/300 (3%)

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                N        A   FNKSH+ AY  ++YQTA++K +YP+E++AA +T    + +K++
Sbjct: 21   ERYHNFAIKNGLIASNCFNKSHSTAYGYVTYQTAYLKANYPLEYMAALLTANSGDTDKVQ 80

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPF 862
            K+  +     I I PP +N   +DF     +I +   A++ VG      I+ A  +   F
Sbjct: 81   KYINNCVNMGITIDPPDINRSGLDFTPAAGKILFGFTAVRNVGQNAIASILSARNELGQF 140

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
             SL DFC RVD + +NRR +ESL++ GA D    +R QL+  L+ +  +AQ  +K+R + 
Sbjct: 141  QSLADFCDRVDLRAVNRRTVESLIYCGAFDKIETNRQQLINDLELVYDWAQSRDKDRASG 200

Query: 923  HENIFAH----------EKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYK 972
              NIF                F      +         +   E+ +LGFY S HPL   +
Sbjct: 201  QGNIFDLLGTNVTNNQTASNAFEAVPKAQPVQDFPPQEKLRKEKELLGFYVSDHPLKSLR 260

Query: 973  PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 +      +         +    M+ + ++  T KG+++  +   +   + EA  F
Sbjct: 261  QAASLLSPINLSQIKEQKEDTKVCAVIMLNNVKKVMTNKGAQMAILQIEDLTAQSEAVVF 320


>gi|56419793|ref|YP_147111.1| DNA polymerase III PolC [Geobacillus kaustophilus HTA426]
 gi|56379635|dbj|BAD75543.1| DNA-directed DNA polymerase III alpha chain [Geobacillus kaustophilus
            HTA426]
          Length = 1444

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 154/942 (16%), Positives = 299/942 (31%), Gaps = 187/942 (19%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             +   ++A   GI            + N +  ++          + LL     G + L +
Sbjct: 585  LMRLLKEAEERGI--------LFHDELNSRTHSEASYRLARPFHVTLLAQNETGLKNLFK 636

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S L +   +GL++ +G   G +       + +  E     +
Sbjct: 637  LVSLSHIQ-YFHRVPRIPRSVLVK-HRDGLLVGSGCDKGELFDNLIQKAPEEVEDIARFY 694

Query: 175  K--KLFGDRLY---VNLQRHRGYDRYR---ESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
               ++    +Y   +    +   +         +V L    ++P+VAT N  +L+ ED  
Sbjct: 695  DFLEVHPPDVYKPLIE-MDYVKDEEMIKNIIRSIVALGEKLDIPVVATGNVHYLNPEDKI 753

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
               +L+                       N       F    +A E  V+  ++ + ++ 
Sbjct: 754  YRKILIHSQGGA-NPLNRHELPDVYFRTTNEMLDCFSFLGPEKAKEIVVDNTQKIASLIG 812

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               PI         +      + E+R  +    +              +   +RL+ EL 
Sbjct: 813  DVKPIKDELYTPRIEG----ADEEIREMSYRRAKEIYGDPL------PKLVEERLEKELK 862

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------- 399
             I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL        
Sbjct: 863  SIIGHGFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPN 921

Query: 400  ----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQD 425
                                                + FE FL      +PD D++F  +
Sbjct: 922  CKHSEFFNDGSVGSGFDLPDKNCPRCGTKYKKDGHDIPFETFLGFKGDKVPDIDLNFSGE 981

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +     Y +  +G + V +  T G++  K A           Y  V             
Sbjct: 982  YQPRAHNYTKVLFGEDNVYRAGTIGTVADKTA-----------YGFVKAYAS-------- 1022

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLV 543
                     +   R A         +  ++    G+ R    H  GI  V     +    
Sbjct: 1023 -------DHNLELRGA--------EIDRLAAGCTGVKRTTGQHPGGIIVVPDYMEIYDFT 1067

Query: 544  PMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+         +   T F+   I    L+K D LG    T+++   D          +  
Sbjct: 1068 PIQYPADDTSSEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG--IDPKTIPT 1124

Query: 601  IPFDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
               D    +            ++   GT+GI +  +  +RQ LE  +P    +++ +  L
Sbjct: 1125 DDPDVMGIFSSTEPLGVTPEQIMCNVGTIGIPEFGTRFVRQMLEETRPKTFSELVQISGL 1184

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
                            N +E I +    +  ++     +++Y         +  G   S 
Sbjct: 1185 SHG-------TDVWLGNAQELIQNGTCTLSEVIGCRDDIMVYL--------IYRGLEPSL 1229

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            A  +  ++ K      +     F +   K+ + +    +  ++      Y F K+HAAAY
Sbjct: 1230 AFKIMESVRKGKGLTPE-----FEAEMRKHDVPEWYIDSCKKI-----KYMFPKAHAAAY 1279

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ---------------------- 807
             +++ + A+ K H+P+ + A+  T+  ++ +                             
Sbjct: 1280 VLMAVRIAYFKVHHPLLYYASYFTVRAEDFDLDAMIKGSAAIRKRIEEINAKGIQATAKE 1339

Query: 808  -----------DARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                       +  +         +      +F +  N +     AI G+GT  A+ I+ 
Sbjct: 1340 KSLLTVLEVALEMCERGFSFKNIDLYRSQATEFVIDGNSLIPPFNAIPGLGTNVAQAIVR 1399

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            A  +  F S ED   R    KL++ +LE L   G LD     
Sbjct: 1400 AREEGEFLSKEDLQQR---GKLSKTLLEYLESRGCLDSLPDH 1438



 Score = 87.9 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S+  ++++      PAIA+TD   + S  E    A   G++ I 
Sbjct: 343 VELHLHTPMSQMDAVTSVTKLIEQAKKWGHPAIAVTDHAVVQSFPEAYSAAKKHGMKVIY 402

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 403 GLEANIVDDGVPIAYNETHRRLSEETYVVF 432


>gi|261419458|ref|YP_003253140.1| DNA polymerase III subunit chi [Geobacillus sp. Y412MC61]
 gi|319766273|ref|YP_004131774.1| DNA polymerase III subunit alpha [Geobacillus sp. Y412MC52]
 gi|261375915|gb|ACX78658.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC61]
 gi|317111139|gb|ADU93631.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y412MC52]
          Length = 1444

 Score =  246 bits (628), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 154/942 (16%), Positives = 299/942 (31%), Gaps = 187/942 (19%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             +   ++A   GI            + N +  ++          + LL     G + L +
Sbjct: 585  LMRLLKEAEERGI--------LFHDELNSRTHSEASYRLARPFHVTLLAQNETGLKNLFK 636

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S L +   +GL++ +G   G +       + +  E     +
Sbjct: 637  LVSLSHIQ-YFHRVPRIPRSVLVK-HRDGLLVGSGCDKGELFDNLIQKAPEEVEDIARFY 694

Query: 175  K--KLFGDRLY---VNLQRHRGYDRYR---ESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
               ++    +Y   +    +   +         +V L    ++P+VAT N  +L+ ED  
Sbjct: 695  DFLEVHPPDVYKPLIE-MDYVKDEEMIKNIIRSIVALGEKLDIPVVATGNVHYLNPEDKI 753

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
               +L+                       N       F    +A E  V+  ++ + ++ 
Sbjct: 754  YRKILIHSQGGA-NPLNRHELPDVYFRTTNEMLDCFSFLGPEKAKEIVVDNTQKIASLIG 812

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               PI         +      + E+R  +    +              +   +RL+ EL 
Sbjct: 813  DVKPIKDELYTPRIEG----ADEEIREMSYRRAKEIYGDPL------PKLVEERLEKELK 862

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------- 399
             I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL        
Sbjct: 863  SIIGHGFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPN 921

Query: 400  ----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQD 425
                                                + FE FL      +PD D++F  +
Sbjct: 922  CKHSEFFNDGSVGSGFDLPDKNCPRCGTKYKKDGHDIPFETFLGFKGDKVPDIDLNFSGE 981

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +     Y +  +G + V +  T G++  K A           Y  V             
Sbjct: 982  YQPRAHNYTKVLFGEDNVYRAGTIGTVADKTA-----------YGFVKAYAS-------- 1022

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLV 543
                     +   R A         +  ++    G+ R    H  GI  V     +    
Sbjct: 1023 -------DHNLELRGA--------EIDRLAAGCTGVKRTTGQHPGGIIVVPDYMEIYDFT 1067

Query: 544  PMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+         +   T F+   I    L+K D LG    T+++   D          +  
Sbjct: 1068 PIQYPADDTSSEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG--IDPKTIPT 1124

Query: 601  IPFDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
               D    +            ++   GT+GI +  +  +RQ LE  +P    +++ +  L
Sbjct: 1125 DDPDVMGIFSSTEPLGVTPEQIMCNVGTIGIPEFGTRFVRQMLEETRPKTFSELVQISGL 1184

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
                            N +E I +    +  ++     +++Y         +  G   S 
Sbjct: 1185 SHG-------TDVWLGNAQELIQNGTCTLSEVIGCRDDIMVYL--------IYRGLEPSL 1229

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            A  +  ++ K      +     F +   K+ + +    +  ++      Y F K+HAAAY
Sbjct: 1230 AFKIMESVRKGKGLTPE-----FEAEMRKHDVPEWYIDSCKKI-----KYMFPKAHAAAY 1279

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ---------------------- 807
             +++ + A+ K H+P+ + A+  T+  ++ +                             
Sbjct: 1280 VLMAVRIAYFKVHHPLLYYASYFTVRAEDFDLDAMIKGSAAIRKRIEEINAKGIQATAKE 1339

Query: 808  -----------DARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                       +  +         +      +F +  N +     AI G+GT  A+ I+ 
Sbjct: 1340 KSLLTVLEVALEMCERGFSFKNIDLYRSQATEFVIDGNSLIPPFNAIPGLGTNVAQAIVR 1399

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            A  +  F S ED   R    KL++ +LE L   G LD     
Sbjct: 1400 AREEGEFLSKEDLQQR---GKLSKTLLEYLESRGCLDSLPDH 1438



 Score = 87.9 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S+  ++++      PAIA+TD   + S  E    A   G++ I 
Sbjct: 343 VELHLHTPMSQMDAVTSVTKLIEQAKKWGHPAIAVTDHAVVQSFPEAYSAAKKHGMKVIY 402

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 403 GLEANIVDDGVPIAYNETHRRLSEETYVVF 432


>gi|297530567|ref|YP_003671842.1| DNA polymerase III subunit alpha [Geobacillus sp. C56-T3]
 gi|297253819|gb|ADI27265.1| DNA polymerase III, alpha subunit [Geobacillus sp. C56-T3]
          Length = 1444

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 154/942 (16%), Positives = 299/942 (31%), Gaps = 187/942 (19%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             +   ++A   GI            + N +  ++          + LL     G + L +
Sbjct: 585  LMRLLKEAEERGI--------LFHDELNSRTHSEASYRLARPFHVTLLAQNETGLKNLFK 636

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S L +   +GL++ +G   G +       + +  E     +
Sbjct: 637  LVSLSHIQ-YFHRVPRIPRSVLVK-HRDGLLVGSGCDKGELFDNLIQKAPEEVEDIARFY 694

Query: 175  K--KLFGDRLY---VNLQRHRGYDRYR---ESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
               ++    +Y   +    +   +         +V L    ++P+VAT N  +L+ ED  
Sbjct: 695  DFLEVHPPDVYKPLIE-MDYVKDEEMIKNIIRSIVALGEKLDIPVVATGNVHYLNPEDKI 753

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
               +L+                       N       F    +A E  V+  ++ + ++ 
Sbjct: 754  YRKILIHSQGGA-NPLNRHELPDVYFRTTNEMLDCFSFLGPEKAKEIVVDNTQKIASLIG 812

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               PI         +      + E+R  +    +              +   +RL+ EL 
Sbjct: 813  DVKPIKDELYTPRIEG----ADEEIREMSYRRAKEIYGDPL------PKLVEERLEKELK 862

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------- 399
             I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL        
Sbjct: 863  SIIGHGFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPN 921

Query: 400  ----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQD 425
                                                + FE FL      +PD D++F  +
Sbjct: 922  CKHSEFFNDGSVGSGFDLPDKNCPRCGTKYKKDGHDIPFETFLGFKGDKVPDIDLNFSGE 981

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +     Y +  +G + V +  T G++  K A           Y  V             
Sbjct: 982  YQPRAHNYTKVLFGEDNVYRAGTIGTVADKTA-----------YGFVKAYAS-------- 1022

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLV 543
                     +   R A         +  ++    G+ R    H  GI  V     +    
Sbjct: 1023 -------DHNLELRGA--------EIDRLAAGCTGVKRTTGQHPGGIIVVPDYMEIYDFT 1067

Query: 544  PMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+         +   T F+   I    L+K D LG    T+++   D          +  
Sbjct: 1068 PIQYPADDTSSEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG--IDPKTIPT 1124

Query: 601  IPFDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
               D    +            ++   GT+GI +  +  +RQ LE  +P    +++ +  L
Sbjct: 1125 DDPDVMGIFSSTEPLGVTPEQIMCNVGTIGIPEFGTRFVRQMLEETRPKTFSELVQISGL 1184

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
                            N +E I +    +  ++     +++Y         +  G   S 
Sbjct: 1185 SHG-------TDVWLGNAQELIQNGTCTLSEVIGCRDDIMVYL--------IYRGLEPSL 1229

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            A  +  ++ K      +     F +   K+ + +    +  ++      Y F K+HAAAY
Sbjct: 1230 AFKIMESVRKGKGLTPE-----FEAEMRKHDVPEWYIDSCKKI-----KYMFPKAHAAAY 1279

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ---------------------- 807
             +++ + A+ K H+P+ + A+  T+  ++ +                             
Sbjct: 1280 VLMAVRIAYFKVHHPLLYYASYFTVRAEDFDLDAMIKGSAAIRKRIEEINAKGIQATAKE 1339

Query: 808  -----------DARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                       +  +         +      +F +  N +     AI G+GT  A+ I+ 
Sbjct: 1340 KSLLTVLEVALEMCERGFSFKNIDLYRSQATEFVIDGNSLIPPFNAIPGLGTNVAQAIVR 1399

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            A  +  F S ED   R    KL++ +LE L   G LD     
Sbjct: 1400 AREEGEFLSKEDLQQR---GKLSKTLLEYLESRGCLDSLPDH 1438



 Score = 87.9 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S+  ++++      PAIA+TD   + S  E    A   G++ I 
Sbjct: 343 VELHLHTPMSQMDAVTSVTKLIEQAKKWGHPAIAVTDHAVVQSFPEAYSAAKKHGMKVIY 402

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 403 GLEANIVDDGVPIAYNETHRRLADETYVVF 432


>gi|261218071|ref|ZP_05932352.1| error-prone DNA polymerase [Brucella ceti M13/05/1]
 gi|260923160|gb|EEX89728.1| error-prone DNA polymerase [Brucella ceti M13/05/1]
          Length = 468

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 89/406 (21%), Positives = 165/406 (40%), Gaps = 32/406 (7%)

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP----------LIDPMLKETQGVIIYQE 693
            +  V++ RPGPI   +V+   +    +     P           +  +L +T+GV ++QE
Sbjct: 1    MIEVAIVRPGPIQGDMVHPYLRRRSGQEPCTLPSPSPQHGPANELQQILGKTKGVPLFQE 60

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKE-EMDKQKERFISGASKNGISKTIAVNIFEL 752
            Q M+IA   + ++  EA+ LRRAM    K   +   +++ I G    G  +T A N F  
Sbjct: 61   QAMRIAMEAAKFTPEEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYDRTFAENCFNQ 120

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
            +  F +YGF +SHAA++A + Y +AW+K H+P  F AA +  +        +  +DAR+ 
Sbjct: 121  IKGFGEYGFPESHAASFAHLVYISAWLKCHHPEVFAAALLNSQPMGFYAPAQIVRDAREH 180

Query: 813  NIQIMPPSVNTPCVDFKVGDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
             + ++P  VN    D  + +       +      I G        ++    + P+ ++ED
Sbjct: 181  GVTVLPVDVNFSQWDNILEETPDVHLALRLGFRQIDGFSKRDTELLIADRQE-PYRTIED 239

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
               R+   +L+RR    L  A A       R   L ++  +            ++   +F
Sbjct: 240  MHRRL---RLDRRAFTLLADADAFGSLDIDRRAALWAVRRL----------PNDETLPLF 286

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                 +   +    K     +S     +         GHPL   +  L   G+       
Sbjct: 287  RAAAASELAQEPRTKLPEMAASEHVIADYETTRLSLKGHPLQYLREGLAAEGVSTCRAVQ 346

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                G  +++A +V  +Q+  + KG  + ++T  +         +P
Sbjct: 347  EGADGRRMKVAGVVTVRQRPGSAKG--VVFLTIEDETGIANIVIWP 390


>gi|158320555|ref|YP_001513062.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs]
 gi|158140754|gb|ABW19066.1| DNA polymerase III, alpha subunit [Alkaliphilus oremlandii OhILAs]
          Length = 1441

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 157/933 (16%), Positives = 318/933 (34%), Gaps = 187/933 (20%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F +      I+ +           N K++ +          I++L     G + L  L
Sbjct: 582  IKFVEMMNKKDIRTL--------KDINDKLSKKLDYKTLKSYHIIILAKNYIGLENLYRL 633

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  ++ +   +  RI  S L +   EGLI+ T   +G + ++   +  Q   +++  + 
Sbjct: 634  VSESHI-NYFYKKPRIPRSLLNKF-REGLILGTACEAGELFQSILSSKPQSHIEKIAKYY 691

Query: 176  KLF------GDRLYVN--LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
                      +R  +   L ++    +    ++V L     +P+VAT +  FL  +D   
Sbjct: 692  DYLEIQPIGNNRFLIEKNLAKNEEDLKELNRKIVDLGERLNIPVVATCDVHFLENKDSIF 751

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE-IARRCSFILQ 286
                       ++          D           +  +     +   E +    +  + 
Sbjct: 752  R---------KILMTGQGFSDAEDQAPLYFRTTDEMLEEFIYLGKEKAEEVVIHATNRIN 802

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
                 +    +       +  E ELR      +     +         +  + RLD ELN
Sbjct: 803  DAIEDIIPIPDGTFPPEIEGSEEELRRMCYEKVRRIYGEDV------PELVKNRLDKELN 856

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------- 399
             I    ++  ++I    +  + K+   VG  RGS   S  A    IT+++PL        
Sbjct: 857  SIISNGYAVMYIIAHKLVTKSLKDGYLVG-SRGSVGSSFAATMSDITEVNPLPPHYICPT 915

Query: 400  ----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQD 425
                                                + FE FL  +    PD D++F  +
Sbjct: 916  CKYSHFILDGSIGSGADLPDKNCPQCGESLMKDGHDIPFEVFLGFEGDKEPDIDLNFAGE 975

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             + E  +Y +  +G  +V +  T G++  K A   V + ++                   
Sbjct: 976  YQSEAHKYTEELFGKGKVYRAGTIGTIADKTAYGFVRKYVE------------------- 1016

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLV 543
                            +  + ++  +  ++Q   G+ R +  H  G++I   +  + +  
Sbjct: 1017 ---------------EKQLNYNMSEINRLTQGCTGIKRTSGQHPGGVMIVPANYDIHKFC 1061

Query: 544  PMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+     D +S +  T F+   I    L+K D LG    ++++   D      +++ L  
Sbjct: 1062 PIQYPANDPKSGVITTHFDYHSI-SGRLLKLDILGHDGPSIIKMLEDLTHVNALEIPLDD 1120

Query: 601  IPFDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                +  T           +    GTLGI +  +  +RQ L   QP    +++ +  L  
Sbjct: 1121 KETIEIFTSTRPLGITPEDIHCEVGTLGIPEFGTKFVRQMLIDTQPTTFAELVRISGLSH 1180

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N ++ + +    +  ++     ++ Y         +L G     A 
Sbjct: 1181 G-------TDVWVNNAQDLVRNNIAELKDVISTRDDIMNYL--------ILKGLPPKTAF 1225

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +   + K      + +         ++ + +    +  ++      Y F K+HAAAY  
Sbjct: 1226 KIMENVRKGKGLTPENE-----QEMKEHNVPEWYIDSCNKI-----KYMFPKAHAAAYVT 1275

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ------------------------ 807
            +S++TA+ K HYP  F A   T + ++ +                               
Sbjct: 1276 MSFRTAYFKVHYPAAFYATYFTTKAEDFDADFIIKGKEAVRLKIKELEAMGNDLTAKEKN 1335

Query: 808  ---------DARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +     I+++P  + T   D FK+ D ++   L  ++GVG   A+ I+EA 
Sbjct: 1336 FLTVLEVALEMYCRGIELLPVDLYTSDADRFKIVDGKLLPPLKGLQGVGENAAKSIVEAR 1395

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             +  F S+ED   R    K+ + V+E+LV  G 
Sbjct: 1396 EEGEFISVEDLRKRT---KITKTVVEALVSHGC 1425



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L +H+  S ++G  S+ NI+ K A     AIA+TD   + +  E        G++ I 
Sbjct: 341 IELHLHTQMSSMDGTSSITNIIKKAAKWGHKAIAVTDHGVVQAFPEAMDAGKKFGVKVIY 400

Query: 72  GCQLDIDMQD 81
           G +  +   +
Sbjct: 401 GMEGYLVDDE 410


>gi|112959021|gb|ABI27000.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959024|gb|ABI27002.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959027|gb|ABI27004.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959030|gb|ABI27006.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959033|gb|ABI27008.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959036|gb|ABI27010.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959039|gb|ABI27012.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959042|gb|ABI27014.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959048|gb|ABI27018.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959051|gb|ABI27020.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959054|gb|ABI27022.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959057|gb|ABI27024.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959060|gb|ABI27026.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959063|gb|ABI27028.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959066|gb|ABI27030.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959069|gb|ABI27032.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959072|gb|ABI27034.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959075|gb|ABI27036.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959078|gb|ABI27038.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959081|gb|ABI27040.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959084|gb|ABI27042.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959087|gb|ABI27044.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959090|gb|ABI27046.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959093|gb|ABI27048.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959096|gb|ABI27050.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959099|gb|ABI27052.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959102|gb|ABI27054.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959105|gb|ABI27056.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959111|gb|ABI27060.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959114|gb|ABI27062.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959117|gb|ABI27064.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959120|gb|ABI27066.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959123|gb|ABI27068.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959126|gb|ABI27070.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959129|gb|ABI27072.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959132|gb|ABI27074.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959135|gb|ABI27076.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959138|gb|ABI27078.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959141|gb|ABI27080.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959144|gb|ABI27082.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959147|gb|ABI27084.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959150|gb|ABI27086.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959153|gb|ABI27088.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959156|gb|ABI27090.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959159|gb|ABI27092.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959162|gb|ABI27094.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959165|gb|ABI27096.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959168|gb|ABI27098.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959171|gb|ABI27100.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959174|gb|ABI27102.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959177|gb|ABI27104.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959180|gb|ABI27106.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959183|gb|ABI27108.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959186|gb|ABI27110.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959189|gb|ABI27112.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959192|gb|ABI27114.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959195|gb|ABI27116.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959198|gb|ABI27118.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959201|gb|ABI27120.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
          Length = 441

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 107/332 (32%), Positives = 183/332 (55%), Gaps = 7/332 (2%)

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S   A  +++++ +FA+YGFN+
Sbjct: 1    GFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNR 60

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++  +A+ + I ++ PS+N 
Sbjct: 61   SHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINH 120

Query: 824  PCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                F+V +   I YS   I+ V T     I+      PF    DFC R+  K L+  VL
Sbjct: 121  SNYYFQVENESSIRYSFRVIRKVPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVL 180

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLE 941
            E+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N+FA +       K    
Sbjct: 181  EALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYR 238

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            K +  +   + E E+   G Y S HP+  Y+  L+ + I       +   G N ++AA V
Sbjct: 239  KTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYV 295

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 296  HEVKSIRTKKGETMCFLTISDDSKELSAVMFP 327


>gi|89098599|ref|ZP_01171481.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
 gi|89086561|gb|EAR65680.1| DNA polymerase III subunit alpha [Bacillus sp. NRRL B-14911]
          Length = 1440

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 154/918 (16%), Positives = 300/918 (32%), Gaps = 177/918 (19%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            ++   Q N  M               LL  T  G + L +LVS  ++ +   +  R+  S
Sbjct: 593  IEYHNQLNDNMGKGNAYQRARPSHCTLLAQTEAGLKNLFKLVSISHM-NYFYRVPRVPRS 651

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY-----VNLQ 187
             L++   EG+++ +G   G +  A      + AE     +   ++    +Y     + L 
Sbjct: 652  LLEKY-REGILVGSGCDRGEVFEAMMQKGPEEAEDLASFYDYLEVHPKAVYAHLIELELV 710

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R         S +V+L    ++P+ AT N  +L+    + +  ++  +            
Sbjct: 711  RDEKALEEIISNIVKLGEKLDIPVAATGNVHYLNP-VDKIYRKILINSQGGANPLNRHQL 769

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                    N       F    +A E  VE   + + ++    PI       + D      
Sbjct: 770  PDVHFRTTNEMLDAFSFLGKEKAKEIVVENTNKVADMIDSIKPIKDDLYTPKIDG----A 825

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + E+RN +                   +    RL+ EL  I    F+  +LI    ++ +
Sbjct: 826  DEEMRNMSYDMARRIYGD------ELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKS 879

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
              +   VG  RGS   S  A    IT+++PL                             
Sbjct: 880  LNDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPACKHSEFFNDGSVGSGFDLPDK 938

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  + +     Y +  +G + V + 
Sbjct: 939  NCPTCDIPYRKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDNVYRA 998

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V +A Q   +   R  +                             
Sbjct: 999  GTIGTVADKTAYGYV-KAYQQDNNLQIRGAE----------------------------- 1028

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS---DLPVTQFNMK 561
                +  ++    G+ R    H  GI  V     +    P+         +   T F+  
Sbjct: 1029 ----IDRLASGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADDRTSEWKTTHFDFH 1084

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY-----------H 610
             I    L+K D LG    T+++   D          +     +  + +            
Sbjct: 1085 SIHD-NLLKLDILGHDDPTVIRMLQDLSG--IDPKTIPTDDPEVMKIFSGTESLGVTQDQ 1141

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            ++   GTLGI +  +  +RQ LE  +P    +++ +  L                N +E 
Sbjct: 1142 IMCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHG-------TDVWLGNAQEL 1194

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            I +    +  ++     +++Y         +  G   + A  +  ++ K      D    
Sbjct: 1195 IHNSICTLSEVIGCRDDIMVYL--------IYQGLEPAFAFKIMESVRKGKGLSDD---- 1242

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                   KN + +    +  ++      Y F K+HAAAY +++ + A+ K H+ + + AA
Sbjct: 1243 -MEEEMRKNEVPEWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHHALLYYAA 1296

Query: 791  SMTLEMDNVE---------------------------------KIKKFCQDARQFNIQIM 817
              T+  ++ +                                  + +   +  +   +  
Sbjct: 1297 YFTVRAEDFDVEAMVRGSQAIRAKIEEINAKGLDASPKEKNLLTVMELALEMNERGYKFS 1356

Query: 818  PPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
               +      DF +  + +     AI G+GT  A +I++A  +  F S ED   R    +
Sbjct: 1357 KVDLYRSDATDFIIDGDSLIPPFNAIPGLGTNAALNIVKARGEGEFLSKEDLQQR---GR 1413

Query: 877  LNRRVLESLVFAGALDCF 894
            +++ +LE L   G L+  
Sbjct: 1414 ISKTILEYLDNHGCLESL 1431



 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S++ ++ +       AIAITD     S  E         I+ + 
Sbjct: 339 VELHLHTPMSQMDAVSSVSALVSQAKKWGHKAIAITDHAVAQSFPEAFGAGKKNDIKILY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G ++++         N    P      IV 
Sbjct: 399 GVEINLIDDGVPIAYNSAPIPLAEGTYIVF 428


>gi|23006744|ref|ZP_00048923.1| COG0587: DNA polymerase III, alpha subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 227

 Score =  245 bits (626), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 94/214 (43%), Positives = 122/214 (57%), Gaps = 6/214 (2%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL VHSSYSLLEG +   +++   AAD+QPA+A+TDTNNLF ALEFS+ A  AGIQPI
Sbjct: 10  FVHLHVHSSYSLLEGGVKAGDLVKAAAADRQPALALTDTNNLFGALEFSEYAAKAGIQPI 69

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G QL I  +         + P     +IVLL     GY  L+ L SR Y      +  R
Sbjct: 70  AGIQLTICFE---APDPMARLPQAGCGNIVLLAQDETGYGNLLRLGSRAYFDGALGEPPR 126

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRH 189
           + +S L E   +G+I LTGG +GP+D +        A KRL   K  FG +RLYV +QRH
Sbjct: 127 VAVSAL-EGAVDGVIALTGGLTGPLDTSLRAGRHDQAAKRLEFLKSAFGEERLYVEIQRH 185

Query: 190 RGYDRY-RESQVVQLAYTHELPLVATNNSLFLSE 222
              D    E ++++LA +H L +VATN   F   
Sbjct: 186 GLADERAVERELLRLADSHGLGIVATNEPYFAKP 219


>gi|112959018|gb|ABI26998.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959045|gb|ABI27016.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
 gi|112959108|gb|ABI27058.1| DNA polymerase III alpha subunit [Listeria monocytogenes]
          Length = 441

 Score =  245 bits (624), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 107/332 (32%), Positives = 183/332 (55%), Gaps = 7/332 (2%)

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G+SL EAD+LRRA+ KK  + +++++  F+ GA   G S   A  +++++ +FA+YGFN+
Sbjct: 1    GFSLGEADLLRRAVSKKKADVLNEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNR 60

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
            SHAAAY+ I++Q A++K H+P  F+++ ++    N +KI ++  +A+ + I ++ PS+N 
Sbjct: 61   SHAAAYSKIAFQLAYLKAHFPAAFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINH 120

Query: 824  PCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                F+V +   I YS   I+ V T     I+      PF    DFC R+  K L+  VL
Sbjct: 121  SNYYFQVENESSIRYSFRVIRKVPTKFILEIINERKKAPFQDFFDFCERMPHKMLSETVL 180

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLE 941
            E+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N+FA +       K    
Sbjct: 181  EALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMNLFAEDDDFLKKMKPRYR 238

Query: 942  KFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMV 1001
            K +  +   + E E+   G Y S HP+  Y+  L+ + I       +   G N ++AA V
Sbjct: 239  KTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLANLSS---GKNYQVAAYV 295

Query: 1002 VSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 296  HEVKSIRTKKGETMCFLTISDDSKELSAVMFP 327


>gi|255657858|ref|ZP_05403267.1| putative DNA polymerase III, alpha subunit [Mitsuokella multacida
           DSM 20544]
 gi|260850046|gb|EEX70053.1| putative DNA polymerase III, alpha subunit [Mitsuokella multacida
           DSM 20544]
          Length = 765

 Score =  244 bits (623), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 81/370 (21%), Positives = 157/370 (42%), Gaps = 33/370 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           ++ L  HS  SLL+G  ++  ++ +  +   PAI++TD   + + + F ++     I+PI
Sbjct: 2   YISLHNHSDGSLLDGYQTVQEMVARAKSLGMPAISLTDHGTMRNTIRFYEECQKNDIKPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +GC+       N++              +V+L    EGY  L +L +  Y  D      R
Sbjct: 62  VGCEFYFCPDVNIR-------DKSLTHHLVILAMNDEGYMNLKKLDTFAYNEDSYYYKPR 114

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           I    L+E  ++GLI L+   +  +       +++  E+    +K+LFGDR Y  +Q   
Sbjct: 115 IDWEALRE-HSDGLICLSACMASIV-------NTENGEEWFEKYKELFGDRFYAEIQPLN 166

Query: 191 GYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
              +     +V+ LA  +++PLV T ++ +   ED   H   + +  +     ++     
Sbjct: 167 LEKQWEYNDKVIGLARKYDVPLVVTTDAHYSIPEDKVYHSHWIRINGNQYHDDENYIWSD 226

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
            +     RS        + E +ENT  IA  C+  +       P++            + 
Sbjct: 227 DE----IRSTKWIPQDVIDECIENTEHIASLCNVTIPDSGSHYPKYPC-------SNPKE 275

Query: 310 ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
           ++R       +  + +G        ++Y +R + E+  +    +  Y LI+   + W K+
Sbjct: 276 KVREICRRHWKELVPKG------KYKEYAERFEMEMKDLEATNYLEYLLIIWSVLSWCKE 329

Query: 370 NNIPVGPGRG 379
             IP+G GRG
Sbjct: 330 QRIPLGEGRG 339


>gi|224482516|gb|ACN50114.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  243 bits (621), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 90/303 (29%), Positives = 149/303 (49%), Gaps = 18/303 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++       +         +  E+ L  K+  G + RL          
Sbjct: 230 SVEIAKRCNVTVRLGE-----YFLPNFPTGGEAIEDFLVMKSREGWKERLKFLFPDPEVR 284

Query: 334 AQD 336
           A+ 
Sbjct: 285 AKR 287


>gi|224482500|gb|ACN50106.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 92/303 (30%), Positives = 150/303 (49%), Gaps = 18/303 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++       +         +  E+ L  K+  GLE RL          
Sbjct: 230 SVEIAKRCNVTVRLGE-----YFLPNFPTGGEAIEDFLVMKSREGLEERLEFLFPDPEVR 284

Query: 334 AQD 336
           A+ 
Sbjct: 285 AKR 287


>gi|196247598|ref|ZP_03146300.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
 gi|196212382|gb|EDY07139.1| DNA polymerase III, alpha subunit [Geobacillus sp. G11MC16]
          Length = 1434

 Score =  243 bits (619), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 152/942 (16%), Positives = 302/942 (32%), Gaps = 187/942 (19%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             +   ++A   GI       L    + N +  ++          + LL     G + L +
Sbjct: 575  LMRLLKEAEERGI-------LY-HDELNSRTHSEASYRLSRPFHVTLLAQNETGLKNLFK 626

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  + +    +  RI  S L +   +GL++ +G   G +       + +  E+    +
Sbjct: 627  LVSLSH-VQYFHRVPRIPRSVLVK-HRDGLLVGSGCDKGELFDNLIQKAPEEVEEIARFY 684

Query: 175  K--KLFGDRLY---VNLQRHRGYDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
               ++    +Y   +    +   +         +V L    ++P+VAT N  +L+ ED  
Sbjct: 685  DFLEVHPPAVYKPLIE-MDYVKDEEMIKDIIRSIVALGEKLDIPVVATGNVHYLNPEDKI 743

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
               +L+                       +       F    +A E  V+  ++ + ++ 
Sbjct: 744  YRKILIHSQGGA-NPLNRHELPDVYFRTTDEMLDCFSFLGAEKAKEIVVDNTQKIASLIG 802

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               PI         +      ++E+R  +    +              +   +RL+ EL 
Sbjct: 803  EVKPIKDDLYTPRIEG----ADDEIREMSYRRAKDIYGDPL------PKIVEERLEKELK 852

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------- 399
             I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL        
Sbjct: 853  SIIGHGFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPN 911

Query: 400  ----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQD 425
                                                + FE FL      +PD D++F  +
Sbjct: 912  CKHSEFFNDGSVGSGFDLPDKNCPQCGTKYKKDGHDIPFETFLGFKGDKVPDIDLNFSGE 971

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +     Y +  +G + V +  T G++  K A           Y  V             
Sbjct: 972  YQPRAHNYTKVLFGEDNVYRAGTIGTVADKTA-----------YGFVKGYAS-------- 1012

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLV 543
                     +   R A         +  ++    G+ R    H  GI  V     +    
Sbjct: 1013 -------DHNLELRGA--------EIDRLAAGCTGVKRTTGQHPGGIIVVPDYMEIYDFT 1057

Query: 544  PMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+         +   T F+   I    L+K D LG    T+++   D          +  
Sbjct: 1058 PIQYPADDTSSEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG--IDPKTIPT 1114

Query: 601  IPFDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
               D    +            ++   GT+GI +  +  +RQ LE  +P    +++ +  L
Sbjct: 1115 DDPDVMGIFSSTEPLGVTPEQIMCNVGTIGIPEFGTRFVRQMLEETKPKTFSELVQISGL 1174

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
                            N +E I +    +  ++     +++Y         +  G   S 
Sbjct: 1175 SHG-------TDVWLGNAQELIQNGTCTLSEVIGCRDDIMVYL--------IYRGLEPSL 1219

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            A  +  ++ K      +     F     K+ + +    +  ++      Y F K+HAAAY
Sbjct: 1220 AFKIMESVRKGKGLTPE-----FEEEMRKHDVPEWYIDSCKKI-----KYMFPKAHAAAY 1269

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ---------------------- 807
             +++ + A+ K H+P+ + A+  T+  ++ +                             
Sbjct: 1270 VLMAVRIAYFKVHHPLLYYASYFTVRAEDFDLDAMIKGSAAIRKRIEEINAKGIQATAKE 1329

Query: 808  -----------DARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                       +  +         +      +F +  + +     AI G+GT  A++I+ 
Sbjct: 1330 KSLLTVLEVALEMCERGFTFKNIDLYRSQATEFVIDGHSLIPPFNAIPGLGTNVAQNIVR 1389

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            A  +  F S ED   R    K+++ +LE L   G LD     
Sbjct: 1390 AREEGEFLSKEDLQQR---GKVSKTLLEYLESRGCLDSLPDH 1428



 Score = 88.7 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S+  ++++      PA+AITD   + S  E    A   G++ + 
Sbjct: 333 VELHLHTPMSQMDAVTSVAKLIEQAKKWGHPAVAITDHAVVQSFPEAYSAAKKHGMKVLY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 393 GMEANIVDDGVPIAYNEAHRRLSDETYVVF 422


>gi|52080261|ref|YP_079052.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580]
 gi|52785638|ref|YP_091467.1| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580]
 gi|52003472|gb|AAU23414.1| DNA polymerase III (alpha subunit) [Bacillus licheniformis ATCC
            14580]
 gi|52348140|gb|AAU40774.1| PolC [Bacillus licheniformis ATCC 14580]
          Length = 1438

 Score =  243 bits (619), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 155/936 (16%), Positives = 293/936 (31%), Gaps = 181/936 (19%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             ++  + A    I       L    Q N  M               LL     G + L +
Sbjct: 579  LVKMLKDAAEKNI-------LY-HDQLNENMGQSNAYQRSRPYHATLLAVNETGLKNLFK 630

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 631  LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDKGEVFEGMMQKSPEEVEDIASFY 688

Query: 175  K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
               ++    +Y     + L R     +   + + +L     +P+VAT N  +L+ ED   
Sbjct: 689  DYLEVMPPEVYRHLLQLELVRDEKALKEIIANITKLGEKLNIPVVATGNVHYLNPEDKIY 748

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
              +L++                      +       F    +A E  V+  R  S  ++ 
Sbjct: 749  RKILVSSQGGA-NPLNRHELPNVHFRSTDEMLEAFSFLGEEKAKEIVVKNTRMISERIEE 807

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              PI       + +      ++E+R  +         +         +   +R++ EL  
Sbjct: 808  IKPIKDDLYTPKIEG----ADDEIRRMSYEKARSIYGEDL------PEIVEKRIEKELKS 857

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------- 399
            I    F+  +LI    ++ +  +   VG  RGS   S+ A    IT+++PL         
Sbjct: 858  IIGHGFAVIYLISHKLVKRSLDDGYLVG-SRGSVGSSLVATLTEITEVNPLPPHYVCPDC 916

Query: 400  ---------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDR 426
                                               + FE FL      +PD D++F  + 
Sbjct: 917  RHSEFFNDGSVGSGFDLPDKDCPKCGAAYRKDGHDIPFETFLGFKGDKVPDIDLNFSGEY 976

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            +     Y +  +G + V +  T G++  K A   V                         
Sbjct: 977  QPHAHNYTKVLFGEDNVYRAGTIGTVAEKTAYGYVKGYANDN------------------ 1018

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVP 544
                                    +  + Q   G+ R    H  GI  V     +    P
Sbjct: 1019 ----------------NLHMRGAEIDRLVQGCTGVKRTTGQHPGGIIVVPDYMDIYDFSP 1062

Query: 545  MYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRG 593
            +        S+   T F+   I    L+K D LG    T+++   D              
Sbjct: 1063 IQFPADATDSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDP 1121

Query: 594  VKVDLSLIPFDDHETYHLL-TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
              + +         T   +    GTLGI +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1122 EVMKIFQGTESLGVTEEQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHG 1181

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                         N +E I +    +  ++     +++Y         +  G   S A  
Sbjct: 1182 -------TDVWLGNAQELIHNNICELSEVIGCRDDIMVYL--------IYQGLEPSLAFK 1226

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K      +     +      N +      +  ++      Y F K+HAAAY ++
Sbjct: 1227 IMEFVRKGKGLTPE-----WEEEMKNNNVPDWYIDSCKKI-----KYMFPKAHAAAYVLM 1276

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ------------------------- 807
            + + A+ K H+P+ + AA  T+  D+ +                                
Sbjct: 1277 AVRIAYFKVHHPLLYYAAYFTVRADDFDIETMIKGSTAIRAVMDDINSKGLDASPKEKSL 1336

Query: 808  --------DARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                    +  +         +      +F +  N +     +I G+GT  A +I++A  
Sbjct: 1337 LTVLELALEMCERGFSFQKVDLYRSSASEFIIDGNSLIPPFNSIPGLGTNAALNIVKARE 1396

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +  F S ED   R    K+++ ++E L   G L+  
Sbjct: 1397 EGEFLSKEDLQKR---GKVSKTIMEYLERHGCLESL 1429



 Score = 88.7 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++   S+  ++++      PAIA+TD   + S  +    +   G++ I 
Sbjct: 336 VELHLHSPMSQMDAVSSIGKLVEQAKKWGHPAIALTDHAVVQSFPDAFAASKKHGVKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           +V 
Sbjct: 396 GLEANLVDDGVPIAYNPVHRLLEEETYVVF 425


>gi|224482470|gb|ACN50091.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  243 bits (619), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 92/303 (30%), Positives = 150/303 (49%), Gaps = 18/303 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++       +         +  E+ L  K+  GLE RL          
Sbjct: 230 SVEIAKRCNVTVRLGE-----YFLPNFPTGGEAIEDFLVMKSREGLEERLEFFFPDPEVR 284

Query: 334 AQD 336
           A+ 
Sbjct: 285 AKR 287


>gi|138894778|ref|YP_001125231.1| DNA polymerase III PolC [Geobacillus thermodenitrificans NG80-2]
 gi|134266291|gb|ABO66486.1| DNA polymerase III alpha subunit [Geobacillus thermodenitrificans
            NG80-2]
          Length = 1442

 Score =  243 bits (619), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 152/942 (16%), Positives = 302/942 (32%), Gaps = 187/942 (19%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             +   ++A   GI       L    + N +  ++          + LL     G + L +
Sbjct: 583  LMRLLKEAEERGI-------LY-HDELNSRTHSEASYRLSRPFHVTLLAQNETGLKNLFK 634

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  + +    +  RI  S L +   +GL++ +G   G +       + +  E+    +
Sbjct: 635  LVSLSH-VQYFHRVPRIPRSVLVK-HRDGLLVGSGCDKGELFDNLIQKAPEEVEEIARFY 692

Query: 175  K--KLFGDRLY---VNLQRHRGYDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
               ++    +Y   +    +   +         +V L    ++P+VAT N  +L+ ED  
Sbjct: 693  DFLEVHPPAVYKPLIE-MDYVKDEEMIKDIIRSIVALGEKLDIPVVATGNVHYLNPEDKI 751

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
               +L+                       +       F    +A E  V+  ++ + ++ 
Sbjct: 752  YRKILIHSQGGA-NPLNRHELPDVYFRTTDEMLDCFSFLGAEKAKEIVVDNTQKIASLIG 810

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               PI         +      ++E+R  +    +              +   +RL+ EL 
Sbjct: 811  EVKPIKDDLYTPRIEG----ADDEIREMSYRRAKDIYGDPL------PKIVEERLEKELK 860

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------- 399
             I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL        
Sbjct: 861  SIIGHGFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPN 919

Query: 400  ----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQD 425
                                                + FE FL      +PD D++F  +
Sbjct: 920  CKHSEFFNDGSVGSGFDLPDKNCPQCGTKYKKDGHDIPFETFLGFKGDKVPDIDLNFSGE 979

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +     Y +  +G + V +  T G++  K A           Y  V             
Sbjct: 980  YQPRAHNYTKVLFGEDNVYRAGTIGTVADKTA-----------YGFVKGYAS-------- 1020

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLV 543
                     +   R A         +  ++    G+ R    H  GI  V     +    
Sbjct: 1021 -------DHNLELRGA--------EIDRLAAGCTGVKRTTGQHPGGIIVVPDYMEIYDFT 1065

Query: 544  PMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+         +   T F+   I    L+K D LG    T+++   D          +  
Sbjct: 1066 PIQYPADDTSSEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG--IDPKTIPT 1122

Query: 601  IPFDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
               D    +            ++   GT+GI +  +  +RQ LE  +P    +++ +  L
Sbjct: 1123 DDPDVMGIFSSTEPLGVTPEQIMCNVGTIGIPEFGTRFVRQMLEETKPKTFSELVQISGL 1182

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
                            N +E I +    +  ++     +++Y         +  G   S 
Sbjct: 1183 SHG-------TDVWLGNAQELIQNGTCTLSEVIGCRDDIMVYL--------IYRGLEPSL 1227

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            A  +  ++ K      +     F     K+ + +    +  ++      Y F K+HAAAY
Sbjct: 1228 AFKIMESVRKGKGLTPE-----FEEEMRKHDVPEWYIDSCKKI-----KYMFPKAHAAAY 1277

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ---------------------- 807
             +++ + A+ K H+P+ + A+  T+  ++ +                             
Sbjct: 1278 VLMAVRIAYFKVHHPLLYYASYFTVRAEDFDLDAMIKGSAAIRKRIEEINAKGIQATAKE 1337

Query: 808  -----------DARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                       +  +         +      +F +  + +     AI G+GT  A++I+ 
Sbjct: 1338 KSLLTVLEVALEMCERGFTFKNIDLYRSQATEFVIDGHSLIPPFNAIPGLGTNVAQNIVR 1397

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            A  +  F S ED   R    K+++ +LE L   G LD     
Sbjct: 1398 AREEGEFLSKEDLQQR---GKVSKTLLEYLESRGCLDSLPDH 1436



 Score = 88.7 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S+  ++++      PA+AITD   + S  E    A   G++ + 
Sbjct: 341 VELHLHTPMSQMDAVTSVAKLIEQAKKWGHPAVAITDHAVVQSFPEAYSAAKKHGMKVLY 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 401 GMEANIVDDGVPIAYNEAHRRLSDETYVVF 430


>gi|239826652|ref|YP_002949276.1| DNA polymerase III PolC [Geobacillus sp. WCH70]
 gi|239806945|gb|ACS24010.1| DNA polymerase III, alpha subunit [Geobacillus sp. WCH70]
          Length = 1435

 Score =  242 bits (617), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 153/942 (16%), Positives = 302/942 (32%), Gaps = 187/942 (19%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             +   + A   GI       L    + N +   +          + LL     G + L +
Sbjct: 576  LMRLLKDAQERGI-------LY-HDELNERSKEEVSYQRSRPFHVTLLAQNDIGLKNLFK 627

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S LQ+   EG+++ +G   G +       + +  E+    +
Sbjct: 628  LVSLSHVK-YFYRVPRIPRSVLQQ-HREGILVGSGCDKGEVFDNMIQKAPEEVEEIAKFY 685

Query: 175  K--KLFGDRLY---VNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
               ++    +Y   +    +   +   +    ++V L     +P+VAT N  +L+ ED  
Sbjct: 686  DFLEVHPPEVYKPLIE-MDYVKDENMIKEIIRKIVMLGEKLNIPVVATGNVHYLNPEDKI 744

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
               +L+          +            +       F    +A E  V   ++ + ++ 
Sbjct: 745  YRKILIHSQGGANPLNRY-ELPDVYFRTTDEMLKCFSFLGEEKAKEIVVMNTQKIADLIG 803

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               PI  +      +      E E+R  +    +              +   QRL+ EL 
Sbjct: 804  EVKPIKDKLYTPRIEG----AEEEIREMSYRRAKEIYGDPL------PEIVEQRLEKELK 853

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------- 399
             I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL        
Sbjct: 854  SIIGHGFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPN 912

Query: 400  ----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQD 425
                                                + FE FL      +PD D++F  +
Sbjct: 913  CKHSEFFNDGSVGSGFDLPDKNCPKCGTKYKKDGHDIPFETFLGFKGDKVPDIDLNFSGE 972

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +     Y +  +G + V +  T G++  K A   V +      +   R  +        
Sbjct: 973  YQPRAHNYTKVLFGEDNVYRAGTIGTVADKTAYGFV-KGYASDLNLQLRSAE-------- 1023

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLV 543
                                     +  ++    G+ R    H  GI+       +    
Sbjct: 1024 -------------------------IDRLAAGCTGVKRTTGQHPGGIIVVPDYMDIYDFT 1058

Query: 544  PMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+         +   T F+   I    L+K D LG    T+++   D          +  
Sbjct: 1059 PIQYPADDTSSEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG--IDPKTIPT 1115

Query: 601  IPFDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
               +  + +            ++   GTLGI +  +  +RQ LE  +P    +++ +  L
Sbjct: 1116 DDPEVMKIFSSTESLGVTPEQIMCNVGTLGIPEFGTRFVRQMLEETKPKTFSELVQISGL 1175

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
                            N +E I +    +  ++     +++Y         +  G   S 
Sbjct: 1176 SHG-------TDVWLGNAQELIQNGTCTLSEVIGCRDDIMVYL--------IYRGLEPSL 1220

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            A  +  ++ K      +     F     K+ + +    +  ++      Y F K+HAAAY
Sbjct: 1221 AFKIMESVRKGKGLTPE-----FEEEMRKHDVPEWYIESCKKI-----KYMFPKAHAAAY 1270

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ---------------------- 807
             +++ + A+ K H+P+ + A+  T+  ++ +                             
Sbjct: 1271 VLMAVRIAYFKVHHPLLYYASYFTVRAEDFDLDAMIKGSAAIRKRIEEINAKGLNATAKE 1330

Query: 808  -----------DARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                       +  +         +      +F +  N +     AI G+GT  A +I+ 
Sbjct: 1331 KSLLTVLEVALEMCERGFSFKNIDLYRSQATEFVIDGNSLIPPFNAIPGLGTNVALNIVR 1390

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            A  +  F S ED   R    KL++ ++E L   G LD     
Sbjct: 1391 AREEGEFLSKEDLQQR---GKLSKTLIEYLESRGCLDSLPDH 1429



 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S+  ++++      PAIA+TD   + S  E    A    ++ + 
Sbjct: 334 VELHLHTPMSQMDAVTSVTKLIEQAKKWGHPAIAVTDHAVVQSFPEAYSAAKKYDMKVLY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 394 GVEANIVDDGVPIAYNEAHRLLSEDTYVVF 423


>gi|224482472|gb|ACN50092.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482476|gb|ACN50094.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482482|gb|ACN50097.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482494|gb|ACN50103.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482498|gb|ACN50105.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482508|gb|ACN50110.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482512|gb|ACN50112.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482514|gb|ACN50113.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  242 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 92/303 (30%), Positives = 149/303 (49%), Gaps = 18/303 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++       +            E+ L  K+  GLE RL          
Sbjct: 230 SVEIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVR 284

Query: 334 AQD 336
           A+ 
Sbjct: 285 AKR 287


>gi|224482480|gb|ACN50096.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482484|gb|ACN50098.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482496|gb|ACN50104.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  242 bits (616), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 92/303 (30%), Positives = 149/303 (49%), Gaps = 18/303 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++       +            E+ L  K+  GLE RL          
Sbjct: 230 SVEIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFFFPDPEVR 284

Query: 334 AQD 336
           A+ 
Sbjct: 285 AKR 287


>gi|260588428|ref|ZP_05854341.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
 gi|260541302|gb|EEX21871.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
          Length = 676

 Score =  241 bits (615), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 104/676 (15%), Positives = 246/676 (36%), Gaps = 66/676 (9%)

Query: 13  HLQVHSSYS---LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF---SQKACAAG 66
           HL VHS YS   L++    ++ ++ K        IAITD  ++   ++     +K  + G
Sbjct: 3   HLHVHSDYSNIRLIDSINKVSKLIQKAVNLNNSGIAITDHESVSGHVQALQIVEKGKSEG 62

Query: 67  -----IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY- 120
                 + I+G ++ + +    ++ +  K+        +LL     G+++L  L S  + 
Sbjct: 63  SIPEDFKLILGNEIYL-VNSLEEVRDNYKSGITKFWHFILLAKDEIGHKQLRILSSLAWD 121

Query: 121 ---LLDQGKQSVRI--CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
                 + +++  +   L  + +     LI  T    G           +   + +    
Sbjct: 122 NSFKTGKMERTPTLKSDLEKIVKENPGHLIASTACLGGECSHWILNKDVEKFNEFVQYCY 181

Query: 176 KLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA- 233
            LFG+  Y  LQ +   ++      ++ ++   ++P + T ++ ++++ED   H+  +  
Sbjct: 182 DLFGEDFYFELQPNNSEEQVLVNKTLISISEQLDIPFIVTCDAHYVNKEDRVFHEAYLNS 241

Query: 234 --------------VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
                            +     +       +  +        + +D             
Sbjct: 242 HEEEREVGDFYATTYMMNVTEIHEYLDWQIGEENVNKAIRNTEVIADKVSNYTLAHSTIV 301

Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEE------ENELRNKAVAGLEVRLAQGAIAKGY- 332
             + I +       +      + I+K        +  L +    G + +     I     
Sbjct: 302 PEANIPEYQEEHYFKDFYDTHEYIRKFAYSDNKYDRYLLHLISQGFKTKGYYVGIKDEEL 361

Query: 333 ----HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA-KKNNIPVGPGRGSGAGSVTA 387
                  +      +++    +   S Y++   + I+    + +  VG  RGS  G  T 
Sbjct: 362 KILIDRIEIELSEMWKVTEKIKNSISSYYISTLELIEIMWNEGDSLVGVARGSVTGMYTM 421

Query: 388 YALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
           Y + +  ++P+++ L   R ++ +R  + D D+D  ++RR +++  ++ + G  RV    
Sbjct: 422 YLIGLIQMNPIQWGLPHWRHISHERPELADIDLDSQRNRRKQIVNAIKKRKGERRVLNSC 481

Query: 448 TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
           TF +  +K+A+    R L +       +  LIP       S+      +   E +     
Sbjct: 482 TFKTEGSKSAVITAARGLGVDNDIAQHIANLIPITRGFTWSIHDCLYGNEEEERKPVIEF 541

Query: 508 VDRLLEI------SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
            + + +I      +  +EGL    S HA+ + + +    +     +   +   +TQFNM 
Sbjct: 542 ANEIKKIPNLLETALNIEGLISGRSIHASAVYLFNDDFIEHNARMKAP-NGTYITQFNMH 600

Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD-------------LSLIPFDDHET 608
             +  G +K D L + +L +++  ++ L + G                   ++ ++  E 
Sbjct: 601 DSDWCGGLKQDMLTISSLDIVRHCMELLIEAGHMQWQGTLRDTYNKYLHPDVLDYETKEM 660

Query: 609 YHLLTTKGTLGIFQLE 624
           +  +     + +FQ  
Sbjct: 661 WDWIAENKVMDLFQWM 676


>gi|224482520|gb|ACN50116.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  241 bits (614), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 92/303 (30%), Positives = 150/303 (49%), Gaps = 18/303 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++       +            E+ L  K+  GLE RL      +   
Sbjct: 230 SVEIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSRKGLEERLEFLFPDQEVR 284

Query: 334 AQD 336
           A+ 
Sbjct: 285 AKR 287


>gi|224482502|gb|ACN50107.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  240 bits (613), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 93/309 (30%), Positives = 151/309 (48%), Gaps = 23/309 (7%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++       +         K  E  L  K+  GLE R     +   + 
Sbjct: 230 SVEIAKRCNVTVRLGE-----YFLPNFPTGGKAIEIFLVMKSREGLEER-----LEFLFP 279

Query: 334 AQDYRQRLD 342
             + R R  
Sbjct: 280 DPEVRARRR 288


>gi|149002436|ref|ZP_01827370.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP14-BS69]
 gi|147759373|gb|EDK66365.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP14-BS69]
          Length = 624

 Score =  240 bits (613), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 190/675 (28%), Positives = 314/675 (46%), Gaps = 74/675 (10%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3   AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G ++ + + D                 +  L  ++ GYQ+L++L +     ++       
Sbjct: 63  GLEMTVFVDDQEVN-------------LRFLALSSVGYQQLMKLSTAKMQGEK------- 102

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             S L +   E + ++            +F+  +  E          G   Y+ +     
Sbjct: 103 TWSVLSQYL-EDIAVIVP----------YFDRVESLE---------LGCDYYIGVYPE-- 140

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                      LA     P++           D E   VL A+  + +  ++   R   D
Sbjct: 141 ----------TLASEFHHPILPLYRVNAFESRDREVLQVLTAIKEN-LPLREVPLRSRQD 189

Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            ++   S         P+AL+N  ++    S+ L +   +          +  +    EL
Sbjct: 190 VFISASSLEKLFQERFPQALDNLEKLISGISYDLDISLKLPR-------FNPARPAVEEL 242

Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
           R +A  G         + KG  +++Y+ RLD EL+VI  M F  YFL+V D +++ + N 
Sbjct: 243 RERAELG--------LVQKGLTSKEYQDRLDQELSVIHDMGFDDYFLVVWDLLRFGRSNG 294

Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
             +G GRGS  GS+ +YAL IT IDP+  +L+FERFLN +R +MPD DID     R + I
Sbjct: 295 YYMGMGRGSAVGSLVSYALDITGIDPVEKNLIFERFLNRERYTMPDIDIDIPDIYRPDFI 354

Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
           RYV NKYG +  AQI+TF +  AK ALRDV +   +P  ++  + K I           A
Sbjct: 355 RYVGNKYGSKHAAQIVTFSTFGAKQALRDVLKRFGVPEYELSAITKKISFRDN---LKSA 411

Query: 492 IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRS 551
              + +FR+   +     +  EI+ K+EG  R  S HAAG+VI D+ L+  +P+      
Sbjct: 412 YEGNLQFRQQINSKLEYQKAFEIACKIEGYPRQTSVHAAGVVISDQDLTNYIPLKYG--D 469

Query: 552 DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYH 610
           ++P+TQ++   +E +GL+K DFLGL+ LT +QK  + LA+       +  I  +D ET  
Sbjct: 470 EIPLTQYDAHGVEASGLLKMDFLGLRNLTFVQKMQELLAETEGIHLKIEEIDLEDKETLA 529

Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
           L  +  T GIFQ E  G  + L+ +QP C ED++A  SL RPG  D I  +  RK+G+E+
Sbjct: 530 LFASGNTKGIFQFEQPGAIRLLKRVQPVCFEDVVATTSLNRPGASDYINNFVARKHGQEE 589

Query: 671 IVSIHPLIDPMLKET 685
           +  + P+++ +    
Sbjct: 590 VTVLDPVLEDIFGSN 604


>gi|224482506|gb|ACN50109.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  240 bits (613), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 91/303 (30%), Positives = 147/303 (48%), Gaps = 18/303 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++       +            E  L  K+  G E RL          
Sbjct: 230 SVEIAKRCNVTVRLGE-----YFLPNFPTGGMAIEIFLVMKSREGWEERLEFLFPDPEVR 284

Query: 334 AQD 336
           A+ 
Sbjct: 285 AKR 287


>gi|224482510|gb|ACN50111.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  240 bits (612), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 90/303 (29%), Positives = 146/303 (48%), Gaps = 18/303 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++       +            E  L  K+  G E RL          
Sbjct: 230 SVEIAKRCNVTVRLGE-----YFLPNFPTGGMAIEIFLVMKSREGWEERLEFLFPDPEVR 284

Query: 334 AQD 336
            + 
Sbjct: 285 GKR 287


>gi|229544431|ref|ZP_04433489.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
 gi|229324916|gb|EEN90593.1| DNA polymerase III, alpha subunit [Bacillus coagulans 36D1]
          Length = 1442

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 160/937 (17%), Positives = 308/937 (32%), Gaps = 185/937 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            L+  + A   GI            + N  M   G           LLV T EG + L +L
Sbjct: 584  LKMLKDARNRGI--------TYHDELNQYMGEGGAYKRARPSHCTLLVRTQEGLKNLFKL 635

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +S  ++ D   +  RI  S LQ+   EG+++ +G   G +            E+    + 
Sbjct: 636  ISLSHI-DYFYRVPRIPRSELQKY-REGILVGSGCDKGEVFEGMMQKDPAEVEEIARFYD 693

Query: 176  --KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    +Y       L R         +++V+L     LP+VAT N  +L+ ED    
Sbjct: 694  YLEVHPKEVYAPLIDQELIRDEKALEEIITKIVRLGEKLNLPVVATGNVHYLNPEDKIYR 753

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L++         + R          +       F    +A E  V+   + + +++  
Sbjct: 754  KILISSQGGANPLNRHR-LPDVHFRTTDEMLACFSFLGEEKAKEIVVDNTNKIAGLIEDV 812

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             P+       + +      E E+R ++    ++             +    RL+ EL  I
Sbjct: 813  KPVKDELYTPKIEG----AEEEIREQSYKRAKMIYGDPL------PEIVEARLEKELKSI 862

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                F+  +LI    ++ +  +   VG  RGS   S+ A    IT+++PL          
Sbjct: 863  IGHGFAVIYLIAHKLVKKSLNDGYLVG-SRGSVGSSLVATMTEITEVNPLPPHYVCPNCK 921

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  D +
Sbjct: 922  HSEFFNDGSVGSGFDLPDKNCPACGAKYKKDGHDIPFETFLGFKGDKVPDIDLNFSGDYQ 981

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G E V +  T G++  K A   V +     ++   R  +          
Sbjct: 982  PRAHAYTKVLFGEEYVYRAGTIGTVAEKTAYGYV-KGYAQDHNLTFRSAE---------- 1030

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPM 545
                                   +  + Q   G+ R    H  GI+       +    P+
Sbjct: 1031 -----------------------IDRLVQGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1067

Query: 546  YR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                 D  S+   T F+   I    ++K D LG    T+++   D          +    
Sbjct: 1068 QYPADDHNSEWRTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IDPKTIPTDD 1124

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            ++   GTLGI +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1125 PEVMKIFSGPEPLGVTEEQIMCKTGTLGIPEFGTKFVRQMLEDTKPTTFAELVQISGLSH 1184

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I +    +  ++     +++Y         +  G   S A 
Sbjct: 1185 G-------TDVWLGNAQELIQNGTCTLPEVIGCRDDIMVYL--------IYQGLEPSLAF 1229

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +  ++ K      +           K  +      +  ++      Y F K+HA AY +
Sbjct: 1230 KIMESVRKGKGLTPE-----MEEEMIKQNVPNWYIESCKKI-----KYMFPKAHATAYVL 1279

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ------------------------ 807
            ++ + A+ K ++P+ + A   T+  ++ +                               
Sbjct: 1280 MAVRIAYFKVYHPLIYYATYFTVRAEDFDLDVMIHGSNSIKAKISEINAKGMDASAKEKS 1339

Query: 808  ---------DARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      +  P  +     D F +  + +     AI G+GT  A +I++A 
Sbjct: 1340 LLTVLELALEMTARGFRFQPIDLYRSEADKFVIDGDSLIPPFNAIPGLGTNAAVNIVKAR 1399

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             +  F S ED   R    K+++ ++E L   G L+  
Sbjct: 1400 EEGEFLSKEDLQRR---GKVSKTIMEYLDGHGCLESL 1433



 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 33/90 (36%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S + ++ +      PAIAITD     S  E        GI+ I 
Sbjct: 341 VELHLHTPMSQMDAVTSASTLVAQAKKWGHPAIAITDHAVAQSFPEAYSAGKKNGIKVIF 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           +V 
Sbjct: 401 GVEANLVDDGVPIAYNDAHVHLDEATYVVF 430


>gi|224482486|gb|ACN50099.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|224482490|gb|ACN50101.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 92/303 (30%), Positives = 148/303 (48%), Gaps = 18/303 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++       +            E  L  K+  GLE RL          
Sbjct: 230 SVEIAKRCNVTVRLGE-----YFLPNFPTGGMAIEIFLVMKSREGLEERLEFLFPDPEVR 284

Query: 334 AQD 336
           A+ 
Sbjct: 285 AKR 287


>gi|56750961|ref|YP_171662.1| DNA polymerase III subunit alpha [Synechococcus elongatus PCC 6301]
 gi|81299381|ref|YP_399589.1| DNA polymerase III subunit alpha [Synechococcus elongatus PCC 7942]
 gi|56685920|dbj|BAD79142.1| DNA polymerase III alpha subunit [Synechococcus elongatus PCC 6301]
 gi|81168262|gb|ABB56602.1| DNA polymerase III, alpha subunit / Intein [Synechococcus elongatus
            PCC 7942]
          Length = 447

 Score =  240 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 88/286 (30%), Positives = 141/286 (49%), Gaps = 9/286 (3%)

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQI 816
            A   FNKSH+ AY  +++QTA++K ++PVE++AA +T+   N +K++K+  +     I++
Sbjct: 34   ASNCFNKSHSTAYGYVTFQTAYLKANFPVEYMAALLTVNSGNADKVQKYIANCAAMGIEV 93

Query: 817  MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSK 875
            +PP +N   VDF    +RI + L+AI+ +G      I+ A     PF SL D C RVD+ 
Sbjct: 94   LPPDINRSGVDFTPTGDRILFGLSAIRNLGLGAIESILAARDVGGPFLSLADLCDRVDTG 153

Query: 876  KLNRRVLESLVFAGALDCF--GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHE--- 930
             LNRR +ESL+ AGALD    G +R QL+  L  +  +A    K+R +   N+F      
Sbjct: 154  SLNRRAMESLIHAGALDVLETGANRQQLVADLPLVIDWANSRAKDRASGQGNLFDMLGSN 213

Query: 931  ---KGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESV 987
                               +   + + E+ +LGFY S HPL V +   R +      +  
Sbjct: 214  DSNSSPLDTAPKAPAVPDYSPDEKLKLEKELLGFYLSDHPLKVVQEPARLLAPASISDLE 273

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                   I   A++   +   T+KG R+  +   + +   EA  FP
Sbjct: 274  DYCDRGLISTIALLTEVKPVVTKKGDRMAILRIEDLSGNTEAVVFP 319


>gi|295399848|ref|ZP_06809829.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
            C56-YS93]
 gi|312111640|ref|YP_003989956.1| DNA polymerase III subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|294978251|gb|EFG53848.1| DNA polymerase III, alpha subunit [Geobacillus thermoglucosidasius
            C56-YS93]
 gi|311216741|gb|ADP75345.1| DNA polymerase III, alpha subunit [Geobacillus sp. Y4.1MC1]
          Length = 1436

 Score =  239 bits (610), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 154/941 (16%), Positives = 300/941 (31%), Gaps = 185/941 (19%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             +   + A   GI       L    + N +   +          + LL     G + L +
Sbjct: 577  LMRMLKDAQERGI-------LY-HDELNKRSKEEVSYQRSRPFHVTLLAQNDIGLKNLFK 628

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S LQ+   EG+++ +G   G +       + +  E+    +
Sbjct: 629  LVSLSHVK-YFYRVPRIPRSVLQQ-HREGILVGSGCDKGEVFDNMIQKAPEEVEEIAQFY 686

Query: 175  K--KLFGDRLY--VNLQRHRGYD---RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
               ++    +Y  +    +   +   +    ++V L     +P+VAT N  +L+ ED   
Sbjct: 687  DFLEVHPPEVYKPLIDMDYVKDENMIKEIIRKIVMLGEKLNIPVVATGNVHYLNREDKIY 746

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
              +L+          +            +       F    +A E  V   ++ + ++  
Sbjct: 747  RKILIHSQGGANPLNRY-ELPDVYFRTTDEMLECFSFLGEEKAKEIVVTNPQKIASLIDE 805

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              PI  +      +      E E+R  +    +              +   QRL+ EL  
Sbjct: 806  VKPIKDKLYTPRIEG----AEEEIREMSYRRAKEIYGDPL------PEIVEQRLEKELKS 855

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------- 399
            I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL         
Sbjct: 856  IIGHGFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPNC 914

Query: 400  ---------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDR 426
                                               + FE FL      +PD D++F  + 
Sbjct: 915  KHSEFFNDGSVGSGFDLPDKNCPKCGTKYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEY 974

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            +     Y +  +G + V +  T G++  K A   V +      +   R  +         
Sbjct: 975  QPRAHNYTKVLFGEDNVYRAGTIGTVADKTAYGFV-KGYASDLNLQLRSAE--------- 1024

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVP 544
                                    +  ++    G+ R    H  GI  V     +    P
Sbjct: 1025 ------------------------IDRLAAGCTGVKRTTGQHPGGIIVVPDYMDIYDFTP 1060

Query: 545  MYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            +         +   T F+   I    L+K D LG    T+++   D          +   
Sbjct: 1061 IQYPADDTSSEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG--IDPKTIPTD 1117

Query: 602  PFDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
              +  + +            ++   GTLGI +  +  +RQ LE  +P    +++ +  L 
Sbjct: 1118 DPEVMKIFSSTESLGVTPEQIMCNVGTLGIPEFGTRFVRQMLEETRPKTFSELVQISGLS 1177

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
                           N +E I +    +  ++     +++Y         +  G   S A
Sbjct: 1178 HG-------TDVWLGNAQELIQNGTCTLSEVIGCRDDIMVYL--------IYRGLEPSLA 1222

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
              +  ++ K      +     F     K+ + +    +  ++      Y F K+HA AY 
Sbjct: 1223 FKIMESVRKGKGLTPE-----FEEEMRKHNVPEWYIESCKKI-----KYMFPKAHATAYV 1272

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ----------------------- 807
            +++ + A+ K HYP+ + A   T+  ++ +                              
Sbjct: 1273 LMAVRIAYFKVHYPLLYYATYFTVRAEDFDLDAMIQGSAAIRKRIEEINAKGLNATAKEK 1332

Query: 808  ----------DARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                      +  +         +      +F +  N +     AI G+GT  A +I+ A
Sbjct: 1333 SLLTVLEVALEMCERGFSFKNIDLYRSQATEFVIDGNSLIPPFNAIPGLGTNVALNIVRA 1392

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
              +  F S ED   R    KL++ ++E L   G LD     
Sbjct: 1393 REEGEFLSKEDLQQR---GKLSKTLIEYLESRGCLDSLPDH 1430



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S+  ++++      PAIA+TD   + +  E    A   G++ + 
Sbjct: 335 VELHLHTQMSQMDAVTSVTKLIEQAKKWGHPAIAVTDHAVVQAFPEAYSAAKKYGMKVLY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 395 GVEANIVDDGVPIAYNEAHRLLAEDTYVVF 424


>gi|13508117|ref|NP_110066.1| DNA polymerase III alpha subunit [Mycoplasma pneumoniae M129]
 gi|2494194|sp|P75404|DPO3A_MYCPN RecName: Full=DNA polymerase III subunit alpha
 gi|1674148|gb|AAB96107.1| DNA polymerase III alpha subunit [Mycoplasma pneumoniae M129]
          Length = 872

 Score =  239 bits (610), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 215/571 (37%), Positives = 312/571 (54%), Gaps = 13/571 (2%)

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
           Q Y +RL  EL +I  + F+ YFL+V+D +Q+A  N+I +GPGRGS  GS+ A+ L IT 
Sbjct: 271 QLYEERLAKELEIINSLHFASYFLVVSDLVQFAHNNDILIGPGRGSAVGSLVAFLLKITQ 330

Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
           IDP+  +L+FERF++  R  +PD DID  + +RD VI YV  KYG E+ AQI+TF   + 
Sbjct: 331 IDPVANNLIFERFISRHRQGLPDIDIDIMETKRDLVIDYVMQKYGREQCAQIVTFQKFKT 390

Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
           ++ALRDVG+         D L KL  +     + +  + D       +L+  S   L E+
Sbjct: 391 RSALRDVGKVFNHIEGAEDLLGKLPKDKSLLELDVNGVTDP----VLQLSLKSFRLLWEV 446

Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
           ++++    R  S HA+G+VI   PL   +P+     ++  VTQ +M W+E   L KFD L
Sbjct: 447 AREIINFPRQPSIHASGVVIVTEPLITTIPL-MVGNNNNYVTQVSMDWLEWYNLNKFDLL 505

Query: 575 GLKTLTLLQKSLDFLAQRGV--KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
           GL  LT++ + +  +  + V  +  L  IP DD  T+  LT + TLG+FQLES GM++ L
Sbjct: 506 GLINLTMIHEVVQAVKPKEVSVQQFLQQIPLDDEATFTNLTNQATLGVFQLESFGMKKVL 565

Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           + ++P  + D+  +++LYRPGP DNI  +   +N       I P I P+LKET GV+I+Q
Sbjct: 566 KQIKPHNLHDLAIVLALYRPGPQDNINTFIANRNLGFDTSDIDPRILPILKETYGVLIFQ 625

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQV+ IA+ ++ YSL  AD  RRA+ KK  + +      F  GA  N  S   A  IF  
Sbjct: 626 EQVINIAKTVANYSLETADSFRRAISKKNLQVIQDNMRSFYEGALANNFSLKAATTIFNY 685

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
           + +FA YGFN SHA  YA++SY TAW+KTHY  +F    +  E    EK K+   +    
Sbjct: 686 IQRFAGYGFNLSHALGYALLSYWTAWLKTHYFEQFNLWWLNHEQGKKEKQKQLLNEFISS 745

Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT---TARHIMEASADKPFDSLE--- 866
             +I PP +N    DF V D ++Y     I G+G        H+ E     P  SL    
Sbjct: 746 GYEICPPLINKAKSDFSVQDKKLYLGFKLINGIGDKQAHALEHVQEVLKQNPNLSLIATV 805

Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           + C       L  + +  L  AG  +CF Y+
Sbjct: 806 NLCLSKTVGGLELKDITLLQQAGCFNCFNYT 836



 Score = 98.3 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 14/105 (13%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV+L  +S Y+ L   LS   ++D    DQQ A+ +TD  NLF A EF      A I+P+
Sbjct: 2   FVNLHTNSYYNFLNSTLSPQKLVDLAVQDQQVAVCLTDP-NLFGATEFFLACQKAHIKPL 60

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
           IG  + +               +    +++++  T  GYQ L+ L
Sbjct: 61  IGLSVTV-------------RHYEQNVNLLVIAQTNRGYQNLMCL 92


>gi|224482518|gb|ACN50115.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  239 bits (610), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 89/303 (29%), Positives = 146/303 (48%), Gaps = 18/303 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++       +            E+ L  K+   LE             
Sbjct: 230 SVEIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSRERLEEPTQFFFPDPEVR 284

Query: 334 AQD 336
           A+ 
Sbjct: 285 AKR 287


>gi|301633233|gb|ADK86787.1| putative DNA polymerase III, alpha subunit [Mycoplasma pneumoniae
           FH]
          Length = 872

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 216/571 (37%), Positives = 314/571 (54%), Gaps = 13/571 (2%)

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
           Q Y +RL  EL +I  + F+GYFL+V+D +Q+A  N+I +GPGRGS  GS+ A+ L IT 
Sbjct: 271 QLYEERLAKELEIINSLHFAGYFLVVSDLVQFAHNNDILIGPGRGSAVGSLVAFLLKITQ 330

Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
           IDP+  +L+FERF++  R  +PD DID  + +RD VI YV  KYG E+ AQI+TF   + 
Sbjct: 331 IDPVANNLIFERFISRHRQGLPDIDIDIMETKRDLVIDYVMQKYGREQCAQIVTFQKFKT 390

Query: 455 KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
           ++ALRDVG+  +      D L KL  +     + +  + D       +L+  S   L E+
Sbjct: 391 RSALRDVGKVFKHIEGAEDLLGKLPKDKSLLELDVNGVTDP----VLQLSLKSFRLLWEV 446

Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
           ++++    R  S HA+G+VI   PL   +P+     ++  VTQ +M W+E   L KFD L
Sbjct: 447 AREIINFPRQPSIHASGVVIVTEPLITTIPL-MVGNNNNYVTQVSMDWLEWYNLNKFDLL 505

Query: 575 GLKTLTLLQKSLDFLAQRGV--KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
           GL  LT++ + +  +  + V  +  L  IP DD  T+  LT + TLG+FQLES GM++ L
Sbjct: 506 GLINLTMIHEVVQAVKPKEVSVQQFLQQIPLDDEATFTNLTNQATLGVFQLESFGMKKVL 565

Query: 633 EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
           + ++P  + D+  +++LYRPGP DNI  +   +N       I P I P+LKET GV+I+Q
Sbjct: 566 KQIKPHNLHDLAIVLALYRPGPQDNINTFIANRNLGFDTSDIDPRILPILKETYGVLIFQ 625

Query: 693 EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
           EQV+ IA+ ++ YSL  AD  RRA+ KK  + +      F  GA  N  S   A  IF  
Sbjct: 626 EQVINIAKTVANYSLETADSFRRAISKKNLQVIQDNMRSFYEGALANNFSLKAATTIFNY 685

Query: 753 LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
           + +FA YGFN SHA  YA++SY TAW+KTHY  +F    +  E    EK K+   +    
Sbjct: 686 IQRFAGYGFNLSHALGYALLSYWTAWLKTHYFEQFNLWWLNHEQGKKEKQKQLLNEFISS 745

Query: 813 NIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT---TARHIMEASADKPFDSLE--- 866
             +I PP +N    DF V D ++Y     I G+G        H+ E     P  SL    
Sbjct: 746 GYEICPPLINKAKSDFSVQDKKLYLGFKLINGIGDKQAHALEHVQEVLKQNPNLSLIATV 805

Query: 867 DFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           + C       L  + +  L  AG  +CF Y+
Sbjct: 806 NLCLSKTVGGLELKDITLLQQAGCFNCFNYT 836



 Score = 98.3 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 14/105 (13%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV+L  +S Y+ L   LS   ++D    DQQ A+ +TD  NLF A EF      A I+P+
Sbjct: 2   FVNLHTNSYYNFLNSTLSPQKLVDLAVQDQQVAVCLTDP-NLFGATEFFLACQKAHIKPL 60

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
           IG  + +               +    +++++  T  GYQ L+ L
Sbjct: 61  IGLSVTV-------------RHYEQNVNLLVIAQTNRGYQNLMCL 92


>gi|224482504|gb|ACN50108.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 92/301 (30%), Positives = 147/301 (48%), Gaps = 18/301 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++       +            E  L  K+  GLE RL          
Sbjct: 230 SVEIAKRCNVTVRLGE-----YFLPNFPTGGMAIEIFLVMKSCEGLEERLEFLFPDPEVR 284

Query: 334 A 334
           A
Sbjct: 285 A 285


>gi|224482468|gb|ACN50090.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  238 bits (608), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 91/303 (30%), Positives = 148/303 (48%), Gaps = 18/303 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++       +            E+ L  K+   LE RL          
Sbjct: 230 SVEIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSRERLEERLEFLFPDPEVR 284

Query: 334 AQD 336
           A+ 
Sbjct: 285 AKR 287


>gi|212639526|ref|YP_002316046.1| DNA polymerase III PolC [Anoxybacillus flavithermus WK1]
 gi|212561006|gb|ACJ34061.1| DNA polymerase III, alpha subunit (gram-positive type) [Anoxybacillus
            flavithermus WK1]
          Length = 1430

 Score =  238 bits (608), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 157/941 (16%), Positives = 301/941 (31%), Gaps = 185/941 (19%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             +   ++    GIQ           Q N     QG           LLV    G + L +
Sbjct: 571  LIHLLKELDEKGIQ--------YMDQLNEASKEQGAFQRSRPFHATLLVQNEVGLKNLFK 622

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  + ++   +  RI  S LQ+   EG+++ +G   G +  A      + AE     +
Sbjct: 623  LVSFSH-VNYFYRVPRIPRSVLQQ-HREGILVGSGCDKGELFEAMMQKGVEEAEAIASFY 680

Query: 175  K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
               ++    +Y     +   R     +   + +VQL     +P+VAT N  ++++ED   
Sbjct: 681  DFLEVHPPEVYAPLIEMEYVRDEAALKEIITNIVQLGDRLGIPVVATGNVHYINQEDKIY 740

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
              +L+                       N       F    +A E  V   ++ + ++  
Sbjct: 741  RKILIHSQSG-GNPLNRHELPNVHFRTTNEMLESFSFLGEQKAKEIVVTNTKKIADLIGE 799

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              PI       + +      + E+R  +    +                  +RL+ EL  
Sbjct: 800  VKPIKDELYTPKIEG----ADEEIRRMSYERAKSIYGDPL------PDIVEKRLEKELKS 849

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------- 399
            I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL         
Sbjct: 850  IIGHGFAVIYLISHKLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPNC 908

Query: 400  ---------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDR 426
                                               + FE FL      +PD D++F  + 
Sbjct: 909  KHSEFFDDGSVGSGFDLPDKDCPKCGARYNKDGHDIPFETFLGFKGDKVPDIDLNFSGEY 968

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            +     Y +  +G + V +  T G++  K A   V   +       D+   +   +    
Sbjct: 969  QPRAHNYTKVLFGEDNVYRAGTIGTVADKTAYGFVKGYIN------DKNLHVRAAE---- 1018

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVP 544
                                    +  ++    G+ R    H  GI  V     +    P
Sbjct: 1019 ------------------------IDRLAAGCTGVKRTTGQHPGGIIVVPDYMDIYDFTP 1054

Query: 545  MYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            +         +   T F+   I    L+K D LG    T+++   D          +   
Sbjct: 1055 IQYPADDTESEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG--IDPKTIPTD 1111

Query: 602  PFDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
              +  + +            ++   GTLGI +  +  +RQ LE  +P    +++ +  L 
Sbjct: 1112 DPEVMKIFSSTESLGVTPEQIMCNTGTLGIPEFGTRFVRQMLEETKPKTFSELVQISGLS 1171

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
                           N +E I S    +  ++     +++Y         +  G   S A
Sbjct: 1172 HG-------TDVWLGNAQELIQSGTCTLSEVIGCRDDIMVYL--------IYRGLEPSLA 1216

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
              +  ++ K      +     F     K+ + +    +  ++      Y F K+HAAAY 
Sbjct: 1217 FKIMESVRKGKGLTPE-----FEEEMRKHDVPEWYIESCKKI-----KYMFPKAHAAAYV 1266

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ----------------------- 807
            +++ + A+ K H+P+ + A+  T+  ++ +                              
Sbjct: 1267 LMAVRIAYFKVHHPLLYYASYFTVRAEDFDLDVMIQGSAAIRRRIEEIQAKGLDASAKEK 1326

Query: 808  ----------DARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                      +  +         +      +F +  + +     AI G+G   A+ I+ A
Sbjct: 1327 NLLTVLEIALEMCERGFSFKHIDLYRSQATEFIIDGHSLIPPFNAIPGLGENVAKSIVRA 1386

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
              +  F S ED   R    K+++ +LE L   G L      
Sbjct: 1387 REEGEFLSKEDLQQR---GKVSKTILEYLESRGCLQSLPDH 1424



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH+  S ++   S+  ++++       AIA+TD   + S  E        G++ + 
Sbjct: 329 VELHVHTQMSQMDAVASITKLVEQAKKWGHEAIAVTDHAVVQSFPEAYSAGKKYGVKILY 388

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 389 GLEANIVDDGVPIAYNEAHRRLMDDTFVVF 418


>gi|222099063|ref|YP_002533631.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359]
 gi|221571453|gb|ACM22265.1| DNA polymerase III polC-type [Thermotoga neapolitana DSM 4359]
          Length = 1367

 Score =  238 bits (608), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 159/937 (16%), Positives = 303/937 (32%), Gaps = 192/937 (20%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            L F +     GI           + +  K+ +             +LV    G + L  L
Sbjct: 516  LRFIEMMKKIGI---------TKLSEMEKLKDSVDFTAQKPYHCTILVQNRTGLKNLYRL 566

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  Y         RI  S L E   EGLI+ +   SG + RA    +S    + +  F 
Sbjct: 567  VSDSYTK-YFHSVPRILKSELIEK-REGLIVGSACISGELARAALEGASDSELEEIAKFY 624

Query: 176  KLFGDRLYVNLQRHRGYD----------RYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
                   Y+ +      +          +    ++ ++A     P+V T +  FL  ED 
Sbjct: 625  D------YIEIMPLDVIEEDEEVDRERLKEVYRKLYRIAKRLNKPVVMTGDVHFLDPEDA 678

Query: 226  EAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            +    L+A        Q      T +  L    + + IF D   A E  VE   R + ++
Sbjct: 679  KGRSALLAPQSRNFERQPALYLRTTEEML---EKAMEIFEDEEIAKEVVVENPNRIAEMI 735

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            +   P+  +        + +  +  +RN  +                  +   +R+  EL
Sbjct: 736  EEVQPLEKKLHPP----VIENADEIVRNLTMERAHELYGDPL------PEIVEKRIKKEL 785

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------ 399
            + I    ++  +LI  + +Q +  +   VG  RGS   S+ A+ L IT+++PL       
Sbjct: 786  DAIINHGYAVLYLIAKELVQKSMSDGYVVG-SRGSVGSSLVAHLLGITEVNPLPPHYRCP 844

Query: 400  -----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQ 424
                                                 + FE F+  +   +PD D++F  
Sbjct: 845  RCKYFEIVEDDRYGAGYDLPDKSCPKCGTPLKKDGHDIPFETFMGFEGDKVPDIDLNFSG 904

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + +D+  R+V+  +G + V +  T  ++  K+A+  V               K       
Sbjct: 905  EYQDQAHRFVEELFGKDHVYRAGTINTIAEKSAVGYV---------------KSYEEKTG 949

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQL 542
              +    +                     +   + G+ R    H  G++I  +   +   
Sbjct: 950  KKLRRAEMER-------------------LVSMITGVKRTTGQHPGGLMIIPKDKEVYDF 990

Query: 543  VPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
             P+          +  T F  + I    L+K D LG    T ++   D      + V + 
Sbjct: 991  TPIQYPANDREAGVFTTHFAYETIHD-DLVKIDALGHDDPTFIKMLKDLTGIDPMSVPMD 1049

Query: 600  LIPFDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                    +           L +  GT GI +  +  +R  L   +P    +++ +  L 
Sbjct: 1050 DPDTLAIFSSVKPLGVDPVELGSDVGTYGIPEFGTEFVRGMLVETRPKSFAELVRISGLS 1109

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
                           N ++ I   +  +  ++     ++ +         +  G   S A
Sbjct: 1110 HG-------TDVWLNNARDWINLGYAKLSEVISCRDDIMNFL--------IHKGMEPSLA 1154

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
              +  ++ K      +           +    +    +   +      Y F K+HA AY 
Sbjct: 1155 FKIMESVRKGKGITEE-----MEKEMRRLKTPEWFIESCKRI-----KYLFPKAHAVAYV 1204

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ----------------------- 807
             ++++ A+ K HYP++F AA  T++ D  +                              
Sbjct: 1205 SMAFRIAYFKVHYPLQFYAAYFTIKGDQFDPTLVLKGKEAIKARLRELKMMTGKDAQKKN 1264

Query: 808  ---------DARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +        +PP +       F +  N +      + G+G + A  I+ A 
Sbjct: 1265 EESVLEVALEMILRGFSFLPPDIFKSDAKKFLIEGNALRIPFNKLPGLGDSVAESIVRAR 1324

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             +KPF S+ED   R    K+N+  +E +   G L   
Sbjct: 1325 EEKPFTSIEDLVRRT---KVNKNHVELMKSLGVLRDL 1358



 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 41/91 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+ +S L+  + + + +++      PA+AITD  N+ +   F   A +AGI+PI 
Sbjct: 273 VELHAHTKFSDLDAIMDIESYVNRAKEWGFPAVAITDHGNVQAIPYFYDAAKSAGIKPIF 332

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           G +  +       + N          + V+ 
Sbjct: 333 GIEAYLVSDVEPILKNFSGNATFEDVTFVVF 363


>gi|197261382|ref|YP_002154198.1| putative DNA polymerase III, alpha subunit [Pseudomonas phage LBL3]
 gi|197244472|emb|CAR31207.1| putative DNA polymerase III, alpha subunit [Pseudomonas phage LBL3]
          Length = 1035

 Score =  238 bits (606), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 193/858 (22%), Positives = 351/858 (40%), Gaps = 88/858 (10%)

Query: 10  SFVHLQVHSSYSLLEGAL--SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           SF  L+V S YS   GA       I+++    + P +AI D    +  + + Q A  A +
Sbjct: 2   SFPQLRVRSGYS--YGAAYGRFPEIIERAKEIESPFVAIVDDGT-WGHVRWEQAATKAEL 58

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
               G ++ I   D+ +   + K          +L       ++   L S+         
Sbjct: 59  PRGFGMEIPIKCADDGEKELKLKAW--------VLAKDT---KKFYRLTSKSVQNQG--- 104

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              +     QE   +G+I             F   +    +   + +  +    +   + 
Sbjct: 105 ---LTPQEFQE--ADGVI------------KFAGEAYAHLDLAGIDYIDINPASM---VA 144

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-MAVAHSTVVSQKDRP 246
            H   +          A     P+V T+ +   S +  +      +  +        +  
Sbjct: 145 AHGAMET---------ARAFGKPVVITSYNDMPSIDHADFASAWKVRESVGLRHIATEEE 195

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +   ++  R E  S  ++    +E   ++    + ++ +                   
Sbjct: 196 LWSRLRHIMTREEFDSAIANTRAVVEQLADVKLAKAPMIHL------------------- 236

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            + ++   A  G   RL++G I      Q+Y  R   E+  I    F  YFL+VAD + +
Sbjct: 237 -DGDIVALAREGQAYRLSRGHIK--EWTQEYEDRFQEEIKQIQLKDFDSYFLVVADLVAF 293

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           AK  ++ VGP RGS AGS+  Y L IT++DPL   LLF+RF++  R  +PD DIDF    
Sbjct: 294 AK-KHMLVGPARGSSAGSLVCYLLGITEVDPLPHRLLFQRFIDISRSDLPDIDIDFADTH 352

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL-IPNDPAH 485
           R  V  Y+Q KYG   V ++    +L+A + +  VG+   +P+   D +    I    A 
Sbjct: 353 RYLVFEYLQQKYGTWNVVKLGNINTLKAASVIAHVGKRFGIPFHDTDNIKNSIIEYTSAD 412

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEG-LYRHASTHAAGIVIGDRPLSQLVP 544
               + + D     +          +             H+  HAAGI++ +  +     
Sbjct: 413 ERYGKGLEDTFEKTQPGRDFREKYEIASACMGDLEIHPSHSGVHAAGILVCNDEVIDFCT 472

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
           +  +      V Q +    E   L+K D LGL+TL ++Q +    AQ      L  +P +
Sbjct: 473 VTSEG-----VAQLDKPDSEYLNLLKIDALGLRTLGVIQDANCVTAQE-----LYDLPLN 522

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662
           D     +L      GIFQ E   +R     +     E+I  + +L RPGP+ + +   Y 
Sbjct: 523 DKAVLDILNEDKMSGIFQFEGQAVRSVANAINITAFENIDHITALARPGPLSSGMATKYI 582

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKI 721
            R  G+E +    P ++  L  T GV +YQEQ+M I + +  +   +   +R+AM  +K 
Sbjct: 583 ERVAGREPVTYTIPQVEQYLSGTYGVFLYQEQIMSIVKDIGQFDWEQTSAIRKAMSARKG 642

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
           +E  +K++E FI GA   G++   A  +++ +  F  +GFN+SH+ +YAV++Y T +MK 
Sbjct: 643 EEFFNKRRELFIEGAKTIGVAPDDANRVWQEMVTFGAWGFNRSHSVSYAVVTYWTCYMKR 702

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           ++ +E+ AA +    D+ + +    ++  +  ++          +++ V D R+   +  
Sbjct: 703 YHRLEYAAACLRAAKDDQQTVSIL-RELAKEGVEYTALDPEHSELNWVVADGRLIGGIMN 761

Query: 842 IKGVGTTTARHIMEASAD 859
            KG G   A   +    +
Sbjct: 762 AKGFGPAKAERFLRLREE 779


>gi|224482474|gb|ACN50093.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  237 bits (605), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 91/303 (30%), Positives = 147/303 (48%), Gaps = 18/303 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD   L   ++F   A   G++PIIG    +          Q +     
Sbjct: 1   VAAMGMPAMALTDFTTLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++       +            E  L  K+  GLE RL          
Sbjct: 230 SVEIAKRCNVTVRLGE-----YFLPNFPTGGMAIEIFLVMKSREGLEERLEFLFPDPEVR 284

Query: 334 AQD 336
           A+ 
Sbjct: 285 AKR 287


>gi|197261474|ref|YP_002154289.1| putative DNA polymerase III, alpha subunit [Pseudomonas phage LMA2]
 gi|197244564|emb|CAR31298.1| putative DNA polymerase III, alpha subunit [Pseudomonas phage LMA2]
          Length = 1036

 Score =  237 bits (604), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 193/858 (22%), Positives = 351/858 (40%), Gaps = 88/858 (10%)

Query: 10  SFVHLQVHSSYSLLEGAL--SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           SF  L+V S YS   GA       I+++    + P +AI D    +  + + Q A  A +
Sbjct: 3   SFPQLRVRSGYS--YGAAYGRFPEIIERAKEIESPFVAIVDDGT-WGHVRWEQAAAKAEL 59

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
               G ++ I   D+ +   + K          +L       ++   L S+         
Sbjct: 60  PRGFGMEIPIKCADDGEKELKLKAW--------VLAKDT---KKFYRLTSKSVQNQG--- 105

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              +     QE   +G+I             F   +    +   + +  +    +   + 
Sbjct: 106 ---LTPQEFQE--ADGVI------------KFAGEAYAHLDLAGIDYIDINPASM---VA 145

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-MAVAHSTVVSQKDRP 246
            H   +          A     P+V T+ +   S +  +      +  +        +  
Sbjct: 146 AHGAMET---------ARAFGKPVVITSYNDMPSIDHADFASAWKVRESVGLRHIATEEE 196

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +   ++  R E  +  ++    +E   ++    + ++ +                   
Sbjct: 197 LWSRLRHIMTREEFDTAAANTRAVVERLADVKLAKAPMINL------------------- 237

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            + ++   A  G   RL++G I      Q+Y  R   E+  I    F  YFL+VAD + +
Sbjct: 238 -DGDIVALAREGQAYRLSRGHIK--EWTQEYEDRFQEEIKQIQLKDFDSYFLVVADLVAF 294

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           AK  ++ VGP RGS AGS+  Y L IT++DPL   LLF+RF++  R  +PD DIDF    
Sbjct: 295 AK-KHMLVGPARGSSAGSLVCYLLGITEVDPLPHRLLFQRFIDISRSDLPDIDIDFADTH 353

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL-IPNDPAH 485
           R  V  Y+Q KYG   V ++    +L+A + +  VG+   +P+   D +    I    A 
Sbjct: 354 RYLVFEYLQQKYGTWNVVKLGNINTLKAASVIAHVGKRFGIPFHDTDNIKNSIIEYTSAD 413

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEG-LYRHASTHAAGIVIGDRPLSQLVP 544
               + + D     +          +             H+  HAAGI++ +  +     
Sbjct: 414 ERYGKGLEDTFEKTQPGRDFREKYEIASACMGDLEIHPSHSGVHAAGILVCNDEVIDFCT 473

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
           +  +      V Q +    E   L+K D LGL+TL ++Q +    AQ      L  +P +
Sbjct: 474 VTSEG-----VAQLDKPDSEYLNLLKIDALGLRTLGVIQDANCVTAQE-----LYDLPLN 523

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662
           D     +L      GIFQ E   +R     +     E+I  + +L RPGP+ + +   Y 
Sbjct: 524 DKAVLDILNEDKMSGIFQFEGQAVRSVANAINITAFENIDHITALARPGPLSSGMATKYI 583

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKI 721
            R  G+E +    P ++  L  T GV +YQEQ+M I + +  +   +   +R+AM  +K 
Sbjct: 584 ERVAGREPVTYTIPQVEQYLSGTYGVFLYQEQIMSIVKDIGQFDWEQTSAIRKAMSARKG 643

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
           +E  +K++E FI GA   G++   A  +++ +  F  +GFN+SH+ +YAV++Y T +MK 
Sbjct: 644 EEFFNKRRELFIEGAKTIGVAPDDAHRVWQEMVTFGAWGFNRSHSVSYAVVTYWTCYMKR 703

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           ++ +E+ AA +    D+ + +    ++  +  ++          +++ V D R+   +  
Sbjct: 704 YHRLEYAAACLRAAKDDQQTVSIL-RELAKEGVEYTALDPEHSELNWVVADGRLIGGIMN 762

Query: 842 IKGVGTTTARHIMEASAD 859
            KG G   A   +    D
Sbjct: 763 AKGFGPAKAERFLRLRED 780


>gi|224482478|gb|ACN50095.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  236 bits (603), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 91/303 (30%), Positives = 147/303 (48%), Gaps = 18/303 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++       +            E  L  K+   LE RL          
Sbjct: 230 SVEIAKRCNVTVRLGE-----YFLPNFPTGGMAIEIFLVMKSRERLEERLEFLFPDPEVR 284

Query: 334 AQD 336
           A+ 
Sbjct: 285 AKR 287


>gi|218148596|ref|YP_002364364.1| hypothetical protein PP141_gp56 [Pseudomonas phage 14-1]
 gi|218059792|emb|CAU13911.1| hypothetical protein [Pseudomonas phage 14-1]
          Length = 1035

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 192/858 (22%), Positives = 350/858 (40%), Gaps = 88/858 (10%)

Query: 10  SFVHLQVHSSYSLLEGAL--SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           SF  L+V S YS   GA       I+++    + P +AI D    +  + + Q A  A +
Sbjct: 2   SFPQLRVRSGYS--YGAAYGRFPEIIERAKEIESPFVAIVDDGT-WGHVRWEQAAVKAEL 58

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
               G ++ I   D+ +   + K          +L       ++   L S+         
Sbjct: 59  PRGFGMEIPIKCADDGEKELKLKAW--------VLAKDT---KKFYRLTSKSVQNQG--- 104

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              +     QE   +G+I             F   +    +   + +  +    +   + 
Sbjct: 105 ---LTPQEFQE--ADGVI------------KFAGEAYAHLDLAGIDYIDINPASM---VA 144

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-MAVAHSTVVSQKDRP 246
            H   +          +     P+V T+ +   S +  +      +  +        +  
Sbjct: 145 AHGAMET---------SRAFGKPVVITSYNDMPSIDHADFASAWKVRESVGLRHIATEEE 195

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +   ++  R E  S  ++    +E   ++    + ++ +                   
Sbjct: 196 LWSRLRHIMTREEFDSAITNTRAVVEQLADVKLAKAPMIHL------------------- 236

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            + ++   A  G   RL++G I      Q+Y  R   E+  I    F  YFL+VAD + +
Sbjct: 237 -DGDIVALAREGQAYRLSRGHIK--EWTQEYEDRFQEEIKQIQLKDFDSYFLVVADLVAF 293

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           AK  ++ VGP RGS AGS+  Y L IT++DPL   LLF+RF++  R  +PD DIDF    
Sbjct: 294 AK-KHMLVGPARGSSAGSLVCYLLGITEVDPLPHRLLFQRFIDISRSDLPDIDIDFADTH 352

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL-IPNDPAH 485
           R  V  Y+Q KYG   V ++    +L+A + +  VG+   +P+   D +    I    A 
Sbjct: 353 RYLVFEYLQQKYGTWNVVKLGNINTLKAASVIAHVGKRFGIPFHDTDNIKNSIIEYTSAD 412

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEG-LYRHASTHAAGIVIGDRPLSQLVP 544
               + + D                +             H+  HAAGI++ +  +     
Sbjct: 413 ERYGKGLEDTFEKTHPGRDFREKYEIASACMGDLEIHPSHSGVHAAGILVCNDEVIDFCT 472

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
           +  +      V Q +    E   L+K D LGL+TL ++Q +    AQ      L  +P +
Sbjct: 473 VTSEG-----VAQLDKPDSEYLNLLKIDALGLRTLGVIQDANCVTAQE-----LYDLPLN 522

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662
           D     +L      GIFQ E   +R     +     E+I  + +L RPGP+ + +   Y 
Sbjct: 523 DKAVLDILNEDKMSGIFQFEGQAVRSVANAINITAFENIDHITALARPGPLSSGMATKYI 582

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKI 721
            R  G+E +    P ++  L  T GV +YQEQ+M I + +  +   +   +R+AM  +K 
Sbjct: 583 ERVAGREPVTYTIPQVEQYLSGTYGVFLYQEQIMSIVKDIGQFDWEQTSAIRKAMSARKG 642

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
           +E  +K++E FI GA   G++   A  +++ +  F  +GFN+SH+ +YAV++Y T +MK 
Sbjct: 643 EEFFNKRRELFIEGAKTIGVAPDDAHRVWQEMVTFGAWGFNRSHSVSYAVVTYWTCYMKR 702

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           ++ +E+ AA +    D+ + +    ++  +  ++          +++ V D R+   +  
Sbjct: 703 YHRLEYAAACLRAAKDDQQTVSIL-RELAKEGVEYTALDPEHSELNWVVADGRLIGGIMN 761

Query: 842 IKGVGTTTARHIMEASAD 859
            KG G   A   +    +
Sbjct: 762 AKGFGPAKAERFLRLREE 779


>gi|224476387|ref|YP_002633993.1| DNA polymerase III PolC [Staphylococcus carnosus subsp. carnosus
            TM300]
 gi|222420994|emb|CAL27808.1| homolog of DNA polymerase III, alpha subunit [Staphylococcus carnosus
            subsp. carnosus TM300]
          Length = 1437

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 156/927 (16%), Positives = 304/927 (32%), Gaps = 180/927 (19%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTV--PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            +L +    ++  +   +  +       I +LV   +G + L ++VS   L+    ++ RI
Sbjct: 587  ELGVTNHKDINQSLSNEDAYKRARPSHITILVQNQDGLKNLFKIVSES-LVTYYYRTPRI 645

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL--TFKKLFGDRLY-----V 184
              S L E   EGL++ T    G +  A         E+      + ++    LY      
Sbjct: 646  PRSLLDEY-REGLLIGTACDEGEVFTAVMQKDQSQVERIAKYYDYIEVQPPALYQDLIDR 704

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             L R          ++++      +P+VAT N  +L+E D  A  +L+A      +    
Sbjct: 705  ELIRDNKTMEEIYERLLKAGEAVNVPIVATGNVHYLNEHDSIARKILIASQPGNPL--NR 762

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                       +       F    +A E  VE  +  +  ++   PI  +      +   
Sbjct: 763  STLPEAHFRTTDEMLDAFHFLGEEKAHEIVVENTQALADRIERVVPIKDKLYTPRMEG-- 820

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                 E+R  +                   Q    RL+ EL  I    FS  +LI    +
Sbjct: 821  --ANEEIREMSYENARKLYGDDL------PQIVIDRLEKELESIIGNGFSVIYLISQRLV 872

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------- 399
            + +  +   VG  RGS   S  A    IT+++PL                          
Sbjct: 873  KKSLNDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPKCKKSEFFNDGSVGSGFDL 931

Query: 400  ---------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL      +PD D++F  + + E   Y +  +G ++V 
Sbjct: 932  PDKKCECGAEMIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPEAHNYTKVLFGEDKVF 991

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++  K A   V +          R  +                           
Sbjct: 992  RAGTIGTVAEKTAFGYV-KGYLNDQGIHKRGAE--------------------------- 1023

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRSD---LPVTQFN 559
                  +  + +   G+ R    H  GI  V     +    P+             T F+
Sbjct: 1024 ------VDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPVQYPADDQSSPWMTTHFD 1077

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY---------- 609
               I    ++K D LG    T+++   D          + +   +    +          
Sbjct: 1078 FHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDDKETMRIFSTPESLGVTE 1134

Query: 610  -HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              ++   GT G+ +  +  +RQ LE  +P    +++ +  L                N +
Sbjct: 1135 EEIMCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG-------TDVWLGNAQ 1187

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            + + S    +  ++     +++Y         + +G   S A  +  A+ K    + +  
Sbjct: 1188 DLVRSGTCDLSGVIGCRDDIMVYL--------MYAGLEPSLAFKIMEAVRKGKGLQEE-- 1237

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
               +     +N +      +  ++      Y F K+HAAAY +++ + A+ K HYP+ + 
Sbjct: 1238 ---WEEVMKENNVPDWYLDSCKKI-----KYMFPKAHAAAYVLMAMRIAYFKVHYPLYYY 1289

Query: 789  AASMTLEMDNVEKIKKF---------------------------------CQDARQFNIQ 815
            A+  T+   + + I                                      +      +
Sbjct: 1290 ASYFTVRASDFDLITMIKDKEGIKTVVKDMYSKYMELGKKEKDVLTVLEIMNEMAHRGYR 1349

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
            + P S+      +F +  + +     ++ G+G   A+ I+EA  + PF S ED   +   
Sbjct: 1350 MQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEAREEGPFLSKEDLNKKA-- 1407

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQL 901
              L+++V+E L   G+L      + QL
Sbjct: 1408 -GLSQKVIEYLDELGSLPGL-PDKAQL 1432



 Score = 84.5 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++G  ++ + + + A    PAIA+TD + + +  +    A    I+ + 
Sbjct: 336 VELHLHTAMSQMDGINNIGDYVAQAAKWGHPAIAVTDHSVVQAFPDAFAAAEKNDIKMLY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G +  +                     +V 
Sbjct: 396 GMEGMLVDDGVPIAYKPTDRILKDATYVVF 425


>gi|313835829|gb|EFS73543.1| PHP domain protein [Propionibacterium acnes HL037PA2]
          Length = 312

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 84/314 (26%), Positives = 134/314 (42%), Gaps = 14/314 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HSSYS L+GA S  +++ +        +A+TD + L+  +  ++ A   GI  I
Sbjct: 4   YAELHCHSSYSFLDGASSPEDLVTRAVELGLSGLALTDHDGLYGVVRMAEAAEVCGIPTI 63

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSV 129
           IG +L I + +      Q     P    +++L +  EGY+RL E ++  YL + G K   
Sbjct: 64  IGSELSIGIPE-----PQNGVADPVGSHLLVLANGPEGYRRLTEALTDAYLAEGGHKGHP 118

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
              L  L E+      +LTG   G + +         AE  L     LFG   + V L  
Sbjct: 119 VHNLDHLAEVADGHWTVLTGCRKGAVRQGLAKGMP-QAEAELRRLVDLFGIGNVLVELTD 177

Query: 189 HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           HR   D      + +LA  H +  VAT  + +   E +E    L AV     + + D   
Sbjct: 178 HRAPTDSRDNDVLAELASRHSVSTVATTAAHYAGAEQFELSCALSAVRARRSLDEMDGWL 237

Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  L++ +EM  +FS   +A++NTV +A + +F LQ   P LP     +       
Sbjct: 238 PPGPVARLRSGAEMADLFSRHRDAVDNTVAVAEKTAFHLQSVRPRLPEQKVPDG----HT 293

Query: 307 EENELRNKAVAGLE 320
             + LR+    G  
Sbjct: 294 PISWLRHLVEEGRR 307


>gi|328905984|gb|EGG25759.1| error-prone DNA polymerase [Propionibacterium sp. P08]
          Length = 368

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 84/314 (26%), Positives = 134/314 (42%), Gaps = 14/314 (4%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HSSYS L+GA S  +++ +        +A+TD + L+  +  ++ A   GI  I
Sbjct: 60  YAELHCHSSYSFLDGASSPEDLVTRAVELGLSGLALTDHDGLYGVVRMAEAAEVCGIPTI 119

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQSV 129
           IG +L I + +      Q     P    +++L +  EGY+RL E ++  YL + G K   
Sbjct: 120 IGSELSIGIPE-----PQNGVADPVGSHLLVLANGPEGYRRLTEALTDAYLAEGGHKGHP 174

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQR 188
              L  L E+      +LTG   G + +         AE  L     LFG   + V L  
Sbjct: 175 VHNLDHLAEVADGHWTVLTGCRKGAVRQGLAKGMP-QAEAELRRLVDLFGIGNVLVELTD 233

Query: 189 HRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           HR   D      + +LA  H +  VAT  + +   E +E    L AV     + + D   
Sbjct: 234 HRAPTDSRDNDVLAELASRHSVSTVATTAAHYAGAEQFELSCALSAVRARRSLDEMDGWL 293

Query: 248 VTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                  L++ +EM  +FS   +A++NTV +A + +F LQ   P LP     +       
Sbjct: 294 PPGPVARLRSGAEMADLFSRHRDAVDNTVAVAEKTAFHLQSVRPRLPEQKVPDG----HT 349

Query: 307 EENELRNKAVAGLE 320
             + LR+    G  
Sbjct: 350 PISWLRHLVEEGRR 363


>gi|224482488|gb|ACN50100.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 91/303 (30%), Positives = 149/303 (49%), Gaps = 18/303 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  +L   ++F   A   G++PIIG    +          Q +     
Sbjct: 1   VAAMGMPAMALTDFTHLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++       +            E+ L  K+  GLE RL          
Sbjct: 230 SVEIAKRCNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVR 284

Query: 334 AQD 336
           A+ 
Sbjct: 285 AKR 287


>gi|157692337|ref|YP_001486799.1| DNA polymerase III PolC [Bacillus pumilus SAFR-032]
 gi|157681095|gb|ABV62239.1| DNA-directed DNA polymerase III alpha subunit [Bacillus pumilus
            SAFR-032]
          Length = 1437

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 151/917 (16%), Positives = 284/917 (30%), Gaps = 173/917 (18%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +    Q N  M              +L+     G + L +LVS  ++     +  RI  
Sbjct: 589  DIAYHDQLNENMGQSNAYQRSRPYHAILIAQNETGLKNLFKLVSLSHIH-YFYRVPRIPR 647

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY-----VNL 186
            S L++   EGLI+ +    G +       S    E     +   ++    +Y     + L
Sbjct: 648  SQLEKY-REGLIIGSACDKGEVFEGMMQKSPDEVEDIAAFYDYLEVHPPEVYQHLLQLEL 706

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R     +   + +V+L      P+VAT N  +L  ED     +L++         +   
Sbjct: 707  VRDERALKEIITNIVKLGEKLNKPVVATGNVHYLHPEDKIYRKILISSQGGANPLNRH-- 764

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                   +  R+    + +      E   EI    +  +      +    +       + 
Sbjct: 765  ---ELPKVHFRTTDEMLEAFSFLGEEKAKEIVVTNTKKVSEMVESIKPIKDDLYTPKIEG 821

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + E+R  +                   +    R++ EL  I    F+  +LI    ++ 
Sbjct: 822  ADEEIREMSYQMARSIYGDDL------PKIVEDRIEKELKSIIGHGFAVIYLISHKLVKK 875

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            +  +   VG  RGS   S+ A    IT+++PL                            
Sbjct: 876  SLDDGYLVG-SRGSVGSSLVATLTEITEVNPLAPHYVCPSCKHSEFFNDGSVGSGFDLPD 934

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL      +PD D++F  + +     Y +  +G E V +
Sbjct: 935  KDCPECGTPYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPIAHNYTKELFGEEYVYR 994

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V                                            
Sbjct: 995  AGTIGTVAEKTAYGYVKGYAGDH----------------------------------NLH 1020

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVR---SDLPVTQFNM 560
                 +  + Q   G+ R    H  GI  V     +    P+        SD   T F+ 
Sbjct: 1021 MRGAEIDRLVQGCTGVKRTTGQHPGGIIVVPDYMDIYDFSPIQFPADATGSDWKTTHFDF 1080

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDHETYHLL 612
              I    L+K D LG    T+++   D                + +         T   +
Sbjct: 1081 HSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFQGTEPLGVTEEQI 1139

Query: 613  -TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
                GTLGI +  +  +RQ LE  +P    +++ +  L                N +E I
Sbjct: 1140 GCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHG-------TDVWLGNAQELI 1192

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
             +    +  ++     +++Y         +  G   S A  +  ++ K      +     
Sbjct: 1193 HNKTCELSEVIGCRDDIMVYL--------IYQGLEPSLAFKIMESVRKGKGLPPE----- 1239

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ + + AA 
Sbjct: 1240 WEEEMKNNNVPNWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHHALLYYAAY 1294

Query: 792  MTLEMDNVE---------------------------------KIKKFCQDARQFNIQIMP 818
             T+  D+ +                                  + +   +  +       
Sbjct: 1295 FTVRADDFDIETMTKGSNAIRAVMDDINSKGLDASPKEKNLLTVLELALEMCERGYHFKK 1354

Query: 819  PSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
              +      +F +  + +     +I G+GT  A +I+ A  D  F S ED   R    K+
Sbjct: 1355 VDLYRSSATEFIIDGDGLIPPFNSIPGLGTNVALNIVRARQDGEFLSKEDLQKR---GKV 1411

Query: 878  NRRVLESLVFAGALDCF 894
            ++ +LE L   G L+  
Sbjct: 1412 SKTILEYLDRQGCLEAL 1428



 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++    +  ++++       AIA+TD   + S  +    +    I+ + 
Sbjct: 335 VELHLHSPMSQMDAVTGIGRLVEQAKKWGHEAIALTDHAVVQSFPDAYAASRKHDIKMMY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G ++++         N           +V 
Sbjct: 395 GVEINLVDDGVPIAYNPEHRLLEDATYVVF 424


>gi|218457858|ref|YP_002418863.1| DNA Polymerase III alpha subunit [Pseudomonas phage SN]
 gi|218379126|emb|CAT99713.1| DNA Polymerase III alpha subunit [Pseudomonas phage SN]
          Length = 1036

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 193/858 (22%), Positives = 351/858 (40%), Gaps = 88/858 (10%)

Query: 10  SFVHLQVHSSYSLLEGAL--SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           SF  L+V S YS   GA       I+++    + P +AI D    +  + + Q A  A +
Sbjct: 3   SFPQLRVRSGYS--YGAAYGRFPEIIERAKEIESPFVAIVDDGT-WGHVRWEQAAVKAEL 59

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
               G ++ I   D+ +   + K          +L       ++   L S+         
Sbjct: 60  PRGFGMEIPIKCADDGEKELKLKAW--------VLAKDT---KKFYRLTSKSVQNQG--- 105

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              +     QE   +G+I             F   +    +   + +  +    +   + 
Sbjct: 106 ---LTPQEFQE--ADGVI------------KFAGEAYAHLDLAGIDYIDINPASM---VA 145

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-MAVAHSTVVSQKDRP 246
            H   +          A     P+V T+ +   S +  +      +  +        +  
Sbjct: 146 AHGAMET---------ARAFGKPVVITSYNDMPSIDHADFASAWKVRESVGLRHIATEEE 196

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +   ++  R E  +  ++    +E   ++    + ++ +                   
Sbjct: 197 LWSRLRHIMTREEFDAAAANTRAVVEQLADVKLAKAPMIHL------------------- 237

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            + ++   A  G   RL++G I      Q+Y  R   E+  I    F  YFL+VAD + +
Sbjct: 238 -DGDIVALAREGQAYRLSRGHIK--EWTQEYEDRFQEEIKQIQLKDFDSYFLVVADLVAF 294

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           AK  ++ VGP RGS AGS+  Y L IT++DPL   LLF+RF++  R  +PD DIDF    
Sbjct: 295 AK-KHMLVGPARGSSAGSLVCYLLGITEVDPLPHRLLFQRFIDISRSDLPDIDIDFADTH 353

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL-IPNDPAH 485
           R  V  Y+Q KYG   V ++    +L+A + +  VG+   +P+   D +    I    A 
Sbjct: 354 RYLVFEYLQQKYGTWNVVKLGNINTLKAASVIAHVGKRFGIPFHDTDNIKNSIIEYTSAD 413

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEG-LYRHASTHAAGIVIGDRPLSQLVP 544
               + + D     +          +             H+  HAAGI++ +  +     
Sbjct: 414 ERYGKGLEDTFEKTQPGRDFREKYEIASACMGDLEIHPSHSGVHAAGILVCNDEVIDFCT 473

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
           +  +      V Q +    E   L+K D LGL+TL ++Q +    AQ      L  +P +
Sbjct: 474 VTSEG-----VAQLDKPDSEYLNLLKIDALGLRTLGVIQDANCVTAQE-----LYDLPLN 523

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662
           D     +L      GIFQ E   +R     +     E+I  + +L RPGP+ + +   Y 
Sbjct: 524 DKAVLDILNEDKMSGIFQFEGQAVRSVANAINITAFENIDHITALARPGPLSSGMATKYI 583

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKI 721
            R  G+E +    P ++  L  T GV +YQEQ+M I + +  +   +   +R+AM  +K 
Sbjct: 584 ERVAGREPVTYTIPQVEQYLSGTYGVFLYQEQIMSIVKDIGQFDWEQTSAIRKAMSARKG 643

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
           +E  +K++E FI GA   G++   A  +++ +  F  +GFN+SH+ +YAV++Y T +MK 
Sbjct: 644 EEFFNKRRELFIEGAKTIGVAPDDAHRVWQEMVTFGAWGFNRSHSVSYAVVTYWTCYMKR 703

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           ++ +E+ AA +    D+ + +    ++  +  ++          +++ V D R+   +  
Sbjct: 704 YHRLEYAAACLRAAKDDQQTVSIL-RELAKEGVEYTALDPEHSELNWVVADGRLIGGIMN 762

Query: 842 IKGVGTTTARHIMEASAD 859
            KG G   A   +    D
Sbjct: 763 AKGFGPAKAEKFLRLRDD 780


>gi|256003329|ref|ZP_05428320.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 2360]
 gi|281417714|ref|ZP_06248734.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
 gi|255992619|gb|EEU02710.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 2360]
 gi|281409116|gb|EFB39374.1| DNA polymerase III, alpha subunit [Clostridium thermocellum JW20]
 gi|316940249|gb|ADU74283.1| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 1313]
          Length = 1442

 Score =  234 bits (597), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 149/927 (16%), Positives = 292/927 (31%), Gaps = 191/927 (20%)

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTV--PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             + ++   D+++   +G   +        ++LV    G + L ++VS+ +L +   +  R
Sbjct: 592  AEKNVKTIDDIQNVFEGCWNYQKANSYHAIILVKNYVGLRNLYKIVSKTHL-EYFHKRPR 650

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    L  +  EGLI+ +   +G + RA   N  +    R++ F        Y+ +Q   
Sbjct: 651  LPRKLLM-MHREGLILGSACEAGELYRAILENKDEDEISRIVKFYD------YLEIQPLG 703

Query: 191  --------------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
                             +    ++V L   +  P+VAT +  F+  +D E    ++    
Sbjct: 704  NNRFLVESGKVNSEEDLKNINRKIVALGEKYNKPVVATCDVHFMDPQD-EVFRRILMAGQ 762

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
                +    P                      E +     +       +           
Sbjct: 763  GFSDADNQAPLYFRTTDEMLEEFEYLGREKCYEVVVTNTNLIADMCEDIL-------PIP 815

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            E       +  E E+R  A                   +   +R++ ELN I +  FS  
Sbjct: 816  EGTFPPKIEGAEEEIRMLAENKAREIYGDPL------PEIVEKRMEKELNSIIKNGFSVM 869

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------- 399
            ++I    +  +  +   VG  RGS   S  AY + IT+++ L                  
Sbjct: 870  YIIAQKLVWKSLSDGYLVG-SRGSVGSSFVAYLIGITEVNSLPPHYICENCKYSEFIEDG 928

Query: 400  ------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                    + + FE FL  +    PD D++F  + +    +Y +
Sbjct: 929  SYGCGFDMPEKECPRCGKILKKDGYDIPFETFLGFEGDKEPDIDLNFSGEYQPIAHKYTE 988

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G   V +  T G++  K A   V   L                              
Sbjct: 989  ELFGVGHVYRAGTIGTIAEKTAYGFVKNYLD----------------------------- 1019

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYR---DVR 550
                  R    +   +  + +   G+ R    H  G++I  +   + +  P+     D  
Sbjct: 1020 -----ERGIVATNAEINRLVKGCTGVKRTTGQHPGGVMIVPQDREIYEFCPIQYPADDPD 1074

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL---------AQRGVKVDLSLI 601
            S    T F+   I    L+K D LG    T+++   D            ++      S  
Sbjct: 1075 SGTITTHFDYHSI-SGRLLKLDILGHDDPTVIKMLEDLTGVNARTIPIGEKRTMGIFSST 1133

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
                     +    GT  I +  +  +RQ L   +P    ++I +  L            
Sbjct: 1134 EPLGIRPEDINCPVGTFAIPEFGTKFVRQMLVDTKPKTFSELIRISGLSHG-------TD 1186

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
                N ++ + +    +  ++     +++          +  G     A  +   + K  
Sbjct: 1187 VWLNNAQDLVRNNIASLSEVICTRDDIML--------NLIHYGLPNKTAFKIMEDVRKGK 1238

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              + + ++             +    + +    K   Y F K+HAAAY +++++ AW K 
Sbjct: 1239 GLKEEYEQIMR----------EKKVPDWYIESCKKIKYMFPKAHAAAYVMMAFRIAWFKV 1288

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFC---------------------------------QD 808
            +YP  F A   T+  D  +                                        +
Sbjct: 1289 YYPEAFYATYFTVRADEFDASMMCHGKEKVKNKIKEYELKGNNMTQKEKNTLTILEVANE 1348

Query: 809  ARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
                 I+ +P  +       FK+  + +   L A++G+G + A  I EA     F S++D
Sbjct: 1349 MYARGIKFLPIDIYKSDAVKFKIEKDGLRPPLNALQGLGVSAAHSIAEARNQGEFLSVDD 1408

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCF 894
               R    K+++ V+E L   G LD  
Sbjct: 1409 LRIRA---KVSKTVIEILQQNGCLDGL 1432



 Score = 99.5 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 35/86 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++G  S+  ++ + A     AIA+TD   + +  E  + A    I+ I 
Sbjct: 344 VELHLHTQMSAMDGVTSVGELIKRAAQWGHKAIAVTDHGVVQAYPEACEAAKKNKIKVIY 403

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       + +    P     
Sbjct: 404 GIEAYLLDDSVPIVYHANGHPVDGEF 429


>gi|194015013|ref|ZP_03053630.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            pumilus ATCC 7061]
 gi|194014039|gb|EDW23604.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            pumilus ATCC 7061]
          Length = 1437

 Score =  234 bits (597), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 151/917 (16%), Positives = 285/917 (31%), Gaps = 173/917 (18%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +    Q N  M              +L+     G + L +LVS  ++     +  RI  
Sbjct: 589  DIAYHDQLNENMGQSNAYQRSRPYHAILIAQNETGLKNLFKLVSLSHIH-YFYRVPRIPR 647

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY-----VNL 186
            S L++   EGLI+ +    G +       S    E     +   ++    +Y     + L
Sbjct: 648  SQLEKY-REGLIIGSACDKGEVFEGMMQKSPDEVEDIAAFYDYLEVHPPEVYQHLLQLEL 706

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R     +   + +V+L      P+VAT N  +L +ED     +L++         +   
Sbjct: 707  VRDERALKEIITNIVKLGEKLNKPVVATGNVHYLHQEDKIYRKILISSQGGANPLNRH-- 764

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                   +  R+    + +      E   EI    +  +      +    +       + 
Sbjct: 765  ---ELPKVHFRTTDEMLEAFSFLGEEKAKEIVVTNTKKVSEMVESIKPIKDDLYTPKIEG 821

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + E+R  +                   +    R++ EL  I    F+  +LI    ++ 
Sbjct: 822  ADEEVREMSYQMARSIYGDDL------PKIVEDRIEKELKSIIGHGFAVIYLISHKLVKK 875

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            +  +   VG  RGS   S+ A    IT+++PL                            
Sbjct: 876  SLDDGYLVG-SRGSVGSSLVATLTEITEVNPLAPHYVCPSCKHSEFFNDGSVGSGFDLPD 934

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL      +PD D++F  + +     Y +  +G E V +
Sbjct: 935  KDCPECGTPYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPIAHNYTKELFGEEYVYR 994

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V                                            
Sbjct: 995  AGTIGTVAEKTAYGYVKGYAGDH----------------------------------NLH 1020

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVR---SDLPVTQFNM 560
                 +  + Q   G+ R    H  GI  V     +    P+        SD   T F+ 
Sbjct: 1021 MRGAEIDRLVQGCTGVKRTTGQHPGGIIVVPDYMDIYDFSPIQFPADATGSDWKTTHFDF 1080

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDHETYHLL 612
              I    L+K D LG    T+++   D                + +         T   +
Sbjct: 1081 HSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFQGTEPLGVTEEQI 1139

Query: 613  -TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
                GTLGI +  +  +RQ LE  +P    +++ +  L                N +E I
Sbjct: 1140 GCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHG-------TDVWLGNAQELI 1192

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
             +    +  ++     +++Y         +  G   S A  +  ++ K      +     
Sbjct: 1193 HNKTCELSEVIGCRDDIMVYL--------IYQGLEPSLAFKIMESVRKGKGLPPE----- 1239

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ + + AA 
Sbjct: 1240 WEEEMKNNNVPNWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHHALLYYAAY 1294

Query: 792  MTLEMDNVE---------------------------------KIKKFCQDARQFNIQIMP 818
             T+  D+ +                                  + +   +  +       
Sbjct: 1295 FTVRADDFDIETMTKGSNAIRAVMDDINSKGLDASPKEKNLLTVLELALEMCERGYHFKK 1354

Query: 819  PSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
              +      +F +  + +     +I G+GT  A +I+ A  D  F S ED   R    K+
Sbjct: 1355 VDLYRSSATEFIIDGDGLIPPFNSIPGLGTNVALNIVRARQDGEFLSKEDLQKR---GKV 1411

Query: 878  NRRVLESLVFAGALDCF 894
            ++ +LE L   G L+  
Sbjct: 1412 SKTILEYLDRQGCLEAL 1428



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++    +  ++++       AIA+TD   + S  +    +    I+ + 
Sbjct: 335 VELHLHSPMSQMDAVTGIGKLVEQAKKWGHEAIALTDHAVVQSFPDAYAASKKHDIKMMY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G ++++         N           +V 
Sbjct: 395 GVEINLVDDGVPIAYNPEHRLLEDATYVVF 424


>gi|294663796|gb|ADF29350.1| putative DNA polymerase III alpha subunit [Pseudomonas phage JG024]
          Length = 1035

 Score =  234 bits (596), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 193/858 (22%), Positives = 351/858 (40%), Gaps = 88/858 (10%)

Query: 10  SFVHLQVHSSYSLLEGAL--SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           SF  L+V S YS   GA       I+++    + P +AI D    +  + + Q A  A +
Sbjct: 2   SFPQLRVRSGYS--YGAAYGRFPEIIERAKEIESPFVAIVDDGT-WGHVRWEQAAVKAEL 58

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
               G ++ I   D+ +   + K          +L       ++   L S+         
Sbjct: 59  PRGFGMEIPIKCADDGEKELKLKAW--------VLAKDT---KKFYRLTSKSVQNQG--- 104

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              +     QE   +G+I             F   +    +   + +  +    +   + 
Sbjct: 105 ---LTPQEFQE--ADGVI------------KFAGEAYAHLDLAGIDYIDINPASM---VA 144

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-MAVAHSTVVSQKDRP 246
            H   +          +     P+V T+ +   S +  +      +  +        +  
Sbjct: 145 AHGAMET---------SRAFGKPVVITSYNDMPSIDHADFASAWKVRESVGLRHIATEEE 195

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             +   ++  R E  S  ++    +E   ++    + ++ +                   
Sbjct: 196 LWSRLRHIMTREEFDSAITNTRAVVEQLADVKLAKAPMIHL------------------- 236

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            + ++   A  G   RL++G I      Q+Y  R   E+  I    F  YFL+VAD + +
Sbjct: 237 -DGDIVALAREGQAYRLSRGHIK--EWTQEYEDRFQEEIKQIQLKDFDSYFLVVADLVAF 293

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           AK  ++ VGP RGS AGS+  Y L IT++DPL   LLF+RF++  R  +PD DIDF    
Sbjct: 294 AK-KHMLVGPARGSSAGSLVCYLLGITEVDPLPHRLLFQRFIDISRSDLPDIDIDFADTH 352

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL-IPNDPAH 485
           R  V  Y+Q KYG   V ++    +L+A + +  VG+   +P+   D +    I    A 
Sbjct: 353 RYLVFEYLQQKYGTWNVVKLGNINTLKAASVIAHVGKRFGIPFHDTDNIKNSIIEYTSAD 412

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEG-LYRHASTHAAGIVIGDRPLSQLVP 544
               + + D     +          +             H+  HAAGI++ +  +     
Sbjct: 413 ERYGKGLEDTFEKTQPGRDFREKYEIASACMGDLEIHPSHSGVHAAGILVCNDEVIDFCT 472

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
           +  +      V Q +    E   L+K D LGL+TL ++Q +    AQ      L  +P +
Sbjct: 473 VTSEG-----VAQLDKPDSEYLNLLKIDALGLRTLGVIQDANCVTAQE-----LYDLPLN 522

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662
           D     +L      GIFQ E   +R     +     E+I  + +L RPGP+ + +   Y 
Sbjct: 523 DKAVLDILNEDKMSGIFQFEGQAVRSVANAINITAFENIDHITALARPGPLSSGMATKYI 582

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKI 721
            R  G+E +    P ++  L  T GV +YQEQ+M I + +  +   +   +R+AM  +K 
Sbjct: 583 ERVAGREPVTYTIPQVEQYLSGTYGVFLYQEQIMSIVKDIGQFDWEQTSAIRKAMSARKG 642

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
           +E  +K++E FI GA   G++   A  +++ +  F  +GFN+SH+ +YAV++Y T +MK 
Sbjct: 643 EEFFNKRRELFIEGAKTIGVAPDDAHRVWQEMVTFGAWGFNRSHSVSYAVVTYWTCYMKR 702

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           ++ +E+ AA +    D+ + +    ++  +  ++          +++ V D R+   +  
Sbjct: 703 YHRLEYAAACLRAAKDDQQTVSIL-RELAKEGVEYTALDPEHSELNWVVADGRLIGGIMN 761

Query: 842 IKGVGTTTARHIMEASAD 859
            KG G   A   +    D
Sbjct: 762 AKGFGPAKAEKFLRLRDD 779


>gi|143342|gb|AAA22666.1| polymerase III [Bacillus subtilis]
          Length = 1437

 Score =  233 bits (595), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 156/936 (16%), Positives = 299/936 (31%), Gaps = 181/936 (19%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 578  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 629

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 630  LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 687

Query: 175  K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
               ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 688  DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 747

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
              +L++                      +       F    +A E  V   ++ + ++  
Sbjct: 748  RKILISSQGGA-NPLNRHELPKVHFRTTDEMLEAFSFLGEEKAKEIVVTNTQKVASLVDD 806

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              PI       + +      + E+R  +         +         +    R++ EL  
Sbjct: 807  IKPIKDDLYTPKIEG----ADEEIRESSYQRARSIYGE------ELPEIVEARIEKELKS 856

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------- 399
            I    F+  +LI    ++ +  +   VG  RGS   S+ A    IT+++PL         
Sbjct: 857  IIGHGFAVIYLISHKLVKRSLDDGYLVG-SRGSVGSSLVATLTEITEVNPLPPHYVCPEC 915

Query: 400  ---------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDR 426
                                               + FE FL      +PD D++F  + 
Sbjct: 916  QHSEFFNDGSVGSGFDLPDKTCPHCGTPLKKDGHDIPFETFLGFKGDKVPDIDLNFSGEY 975

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            + +   Y +  +G + V +  T G++  K A   V       Y++ + L           
Sbjct: 976  QPQAHNYTKVLFGEDNVYRAGTIGTVAEKTAYGYV-----KGYAEDNNL----------- 1019

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVP 544
                                    +  + Q   G+ R    H  GI  V     +    P
Sbjct: 1020 ------------------HMRGAEIDRLVQGCTGVKRTTGQHPGGIIVVPDYMDIYDFSP 1061

Query: 545  MYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRG 593
            +        S+   T F+   I    L+K D LG    T+++   D              
Sbjct: 1062 IQFPADATGSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDP 1120

Query: 594  VKVDLSLIPFDDHETYHLL-TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
              + +         T   +    GTLGI +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1121 EVMKIFQGTESLGVTEEQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHG 1180

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                         N ++ I +    +  ++     +++Y         +  G   S A  
Sbjct: 1181 -------TDVWLGNAQDLIHNNICELSEVIGCRDDIMVYL--------IYQGLEPSLAFK 1225

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K      +     +      N +      +  ++      Y F K+HAAAY ++
Sbjct: 1226 IMEFVRKGKGLTPE-----WEEEMKNNNVPDWYIDSCKKI-----KYMFPKAHAAAYVLM 1275

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ------------------------- 807
            + + A+ K H+ + + AA  T+  D+ +                                
Sbjct: 1276 AVRIAYFKVHHALLYYAAYFTVRADDFDIDTMIKGSTAIRAVMEDINAKGLDASPKEKNL 1335

Query: 808  --------DARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                    +  +         +      +F +  N +     +I G+GT  A +I++A  
Sbjct: 1336 LTVLELALEMCERGYSFQKVDLYRSSATEFIIDGNSLIPPFNSIPGLGTNAALNIVKARE 1395

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +  F S EDF  R    K+++ +LE L   G L+  
Sbjct: 1396 EGEFLSKEDFEKR---GKVSKTILEYLDRHGCLESL 1428



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++    +  ++++       AIA+TD   + S  +    A   GI+ I 
Sbjct: 335 VELHLHSPMSQMDAVTGIGKLVEQAKKWGHEAIALTDHAVVQSFPDAYSAAKKHGIKMIY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           +V 
Sbjct: 395 GMEANLVDDGVPIAYNAAHRLLEEETYVVF 424


>gi|15614981|ref|NP_243284.1| DNA polymerase III PolC [Bacillus halodurans C-125]
 gi|13959348|sp|Q9KA72|DPO3_BACHD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|10175038|dbj|BAB06137.1| DNA polymerase III (alpha subunit) [Bacillus halodurans C-125]
          Length = 1433

 Score =  233 bits (595), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 162/912 (17%), Positives = 301/912 (33%), Gaps = 191/912 (20%)

Query: 88   QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIML 147
            +G          +LL  T EG + L +LVS  + ++   ++ RI  S LQ+   EG+++ 
Sbjct: 599  EGNFHRQRPSHCILLAQTQEGLKNLYKLVSMAH-VEYFYRTPRIPRSQLQK-HREGILVG 656

Query: 148  TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-------------- 193
            +G   G +       + Q  E+    +        Y+ +Q    Y+              
Sbjct: 657  SGCDKGEVFEGMMQKTPQEVEEIAKFYD-------YIEVQPLANYEHLIEKELVKSREAL 709

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +   + +V+L      P+VAT N+ +L EEDY    +L+A           +        
Sbjct: 710  QEIVANIVKLGEQLGKPVVATGNAHYLKEEDYIYRKILIASQGGA-NPLNKQTLPQVHFR 768

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
              +       F    +A E  V      +  ++   PI  +    + +      + E+R 
Sbjct: 769  TTSEMLEAFAFLGEEKAKEIVVTNTNHIADQIEEIHPIPDKLYTPKIEG----ADEEIRQ 824

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
             +                   +    RL+ EL  I    F+  +LI    ++ +  +   
Sbjct: 825  MSYNRARKIYGDPL------PEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLDDGYL 878

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLR---------------------------------- 399
            VG  RGS   S  A    IT+++PL                                   
Sbjct: 879  VG-SRGSVGSSFVATMTEITEVNPLPPHYVCPNCHHSHFFNDGSVGSGYDLPDENCPKCG 937

Query: 400  -------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
                     + FE FL      +PD D++F  + +     Y +  +G   V +  T G++
Sbjct: 938  TPYVKDGQDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKELFGESYVYRAGTIGTV 997

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512
              K A   V +  Q  +    R  +                                 + 
Sbjct: 998  AEKTAYGYV-KGYQSDHDLHFRGAE---------------------------------ID 1023

Query: 513  EISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAG 567
             +     G+ R    H  GI+       +    P+         +   T F+   I    
Sbjct: 1024 RLVTGCTGVKRTTGQHPGGIIVVPDYMDIHDFCPIQFPADDRGAEWKTTHFDFHSIHD-N 1082

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY-----------HLLTTKG 616
            L+K D LG    T+++   D          +     +  + +            +L   G
Sbjct: 1083 LLKLDILGHDDPTVIRMLQDLSG--IDPKTIPTDDPEVMKIFSGPDVLGVTEEQILCKTG 1140

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            TLGI +  +  +RQ LE  +P    +++ +  L                N  E I +   
Sbjct: 1141 TLGIPEFGTRFVRQMLEETKPSTFSELVQISGLSHG-------TDVWLNNANELIYNGTC 1193

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
             +  ++     +++Y         +  G   S A  +   + K    + +     +I   
Sbjct: 1194 ELKDVIGCRDDIMVYL--------IYKGLEPSLAFKIMEFVRKGKGLQPE-----WIEEM 1240

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
             K+ +      +  ++      Y F K+HAAAY +++ + A+ K HYP+ + A+  T+  
Sbjct: 1241 KKHDVPDWYIGSCLKI-----KYMFPKAHAAAYVLMAVRIAYFKVHYPILYYASYFTVRA 1295

Query: 797  DNVE---------KIKKFCQDARQFNIQIMPPS-------------------------VN 822
            D+ +          I+   ++     +   P                             
Sbjct: 1296 DDFDLDTMVKGSAAIRAKIEEINGKGLDASPKEKSLLTVLELALEMVERGFSFQKVDLYR 1355

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
            +   +F V  N +     A+ GVGT  A +I++A  ++ F S ED   R    K+ + VL
Sbjct: 1356 SEATEFLVEGNTLIPPFNALTGVGTNAAINIVKARDEREFLSKEDLQQR---SKITKTVL 1412

Query: 883  ESLVFAGALDCF 894
            E+L   G L+  
Sbjct: 1413 ENLDAHGCLEGL 1424



 Score = 93.7 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++G  S    + + +     AIAITD   + +  E    +   GI+ I 
Sbjct: 333 VELHLHTAMSQMDGISSAGAYVTQASKWGHKAIAITDHGVVQAFPEAYGASQKHGIKVIY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+   P      +V 
Sbjct: 393 GVEANLVDDGVPIAYNEAHIPLLDSEFVVF 422


>gi|295706248|ref|YP_003599323.1| DNA polymerase III subunit alpha [Bacillus megaterium DSM 319]
 gi|294803907|gb|ADF40973.1| DNA polymerase III, alpha subunit [Bacillus megaterium DSM 319]
          Length = 1436

 Score =  233 bits (595), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 157/919 (17%), Positives = 289/919 (31%), Gaps = 177/919 (19%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++ +  + N  M               LL     G + L +LVS  +L +   +  RI  
Sbjct: 588  EITMHDRLNDYMGEGNAYQRARPYHATLLAQNDVGLKNLFKLVSISHL-NYFYRVPRIPR 646

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT--FKKLFGDRLY-----VNL 186
            S L +   EG+++ T    G +            E       + ++     Y     ++L
Sbjct: 647  SQLDKY-REGILIGTACDRGEVFEGMMQKGIDEVEGAAEFYDYIEVQPPDNYKHLIELDL 705

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R     +   S +V+L      P+VAT N  +L+ ED     +L+          + + 
Sbjct: 706  VRDEKALKDIISNIVKLGEKIGKPVVATGNVHYLNPEDKIYRKILIGSQGGANPLNRHQ- 764

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                     +       F D  +A E  V   ++ + ++    PI       + +     
Sbjct: 765  LPDVHFRSTDEMLNCFSFLDGDKAKEIVVHNTQKIADMIDDIKPIKDDLYTPKIEG---- 820

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + E+R  + A       +         +    RL+ EL  I    F+  +LI    ++ 
Sbjct: 821  ADEEMREMSYAMARSIYGEDL------PEVVEARLEKELKSIIGHGFAVIYLISHKLVKK 874

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            +  +   VG  RGS   S  A    IT+++PL                            
Sbjct: 875  SLNDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPKCKKSEFFNDGSVGSGFDLPD 933

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL      +PD D++F  + +     Y +  +G + V +
Sbjct: 934  KSCDDCGVPFIKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDNVYR 993

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V                               A+  R        
Sbjct: 994  AGTIGTVAEKTAYGYV------------------KGYAGDRDLHLRNAEVDRL------- 1028

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS---DLPVTQFNM 560
                          G+ R    H  GI  V     +    P+         +   T F+ 
Sbjct: 1029 ---------VAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADDRNSEWRTTHFDF 1079

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY----------- 609
              I    L+K D LG    T+++   D          +     +  + +           
Sbjct: 1080 HSIHD-NLLKLDILGHDDPTVIRMLQDLSG--IDPKTIPTDDPEVMKIFSGTESLGVTEE 1136

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             ++   GTLGI +  +  +RQ LE  +P    +++ +  L                N +E
Sbjct: 1137 QIMCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHG-------TDVWLGNAQE 1189

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I +    +  ++     +++Y         +  G   S A  +  ++ K      +   
Sbjct: 1190 LIRNDICNLSEVIGCRDDIMVYL--------IYQGLEPSLAFKIMESVRKGKGLTPE--- 1238

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              F     KNG+      +  ++      Y F K+HAAAY +++ + A+ K H+ + + A
Sbjct: 1239 --FEEEMIKNGVPDWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHHALLYYA 1291

Query: 790  ASMTLEMDNVEKIKKFCQ---------------------------------DARQFNIQI 816
            A  T+  D+ +                                        +  +     
Sbjct: 1292 AYFTVRADDFDIDTMIKGSTAIRAKMEEINAKGLDASPKEKNLLTVLELSLEMCERGYSF 1351

Query: 817  MPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +     D F +    +     AI G+GT  A +I++A     F S ED   R    
Sbjct: 1352 KKVDLYESSADEFLIDGTSLVPPFNAIPGLGTNAALNIVKARETGEFLSKEDLQQR---G 1408

Query: 876  KLNRRVLESLVFAGALDCF 894
            K+++ +LE L   G L+  
Sbjct: 1409 KVSKTILEYLDNHGCLESL 1427



 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S+  ++ +      PA+AITD     S  E        GI+ + 
Sbjct: 335 VELHLHTPMSQMDAVSSVGALVGQAKKWGHPAVAITDHAVAQSFPEAYGAGKKNGIKILY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G ++++         N           +V 
Sbjct: 395 GVEVNLVDDGVPIAYNPQHVDLTEATYVVF 424


>gi|224482492|gb|ACN50102.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 289

 Score =  233 bits (595), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 89/303 (29%), Positives = 146/303 (48%), Gaps = 18/303 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD   L   ++F   A   G++PIIG    +          Q +     
Sbjct: 1   VAAMGMPAMALTDFTILCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALEN 273
           N  +F++EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALAN 229

Query: 274 TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
           +VEIA+RC+  +++       +            E  L  K+  G + RL          
Sbjct: 230 SVEIAKRCNVTVRLGE-----YFLPNFPTGGMAIEIFLVMKSREGSQERLEFLFPDPEVR 284

Query: 334 AQD 336
           A+ 
Sbjct: 285 AKR 287


>gi|308173621|ref|YP_003920326.1| DNA polymerase III subunit alpha [Bacillus amyloliquefaciens DSM 7]
 gi|307606485|emb|CBI42856.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens DSM 7]
 gi|328553447|gb|AEB23939.1| DNA polymerase III PolC [Bacillus amyloliquefaciens TA208]
 gi|328911762|gb|AEB63358.1| DNA polymerase III (alpha subunit) [Bacillus amyloliquefaciens LL3]
          Length = 1437

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 153/917 (16%), Positives = 287/917 (31%), Gaps = 173/917 (18%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +    Q N  M               LL     G + L +LVS  ++     +  RI  
Sbjct: 589  DIFYHDQLNENMGQSNAYQRSRPYHATLLAVNETGLKNLFKLVSISHIQ-YFYRVPRIPR 647

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY-----VNL 186
            S L +   EGL++ +    G +       S +  E     +   ++    +Y     + L
Sbjct: 648  SQLDKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLEVQPPEVYRHLLQLEL 706

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R     +   + + +L      P+VAT N  +L++ED     +L++             
Sbjct: 707  VRDEKALKEIITNITKLGEKLNKPVVATGNVHYLNDEDKIYRKILVSSQGGA-NPLNRHE 765

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                     +       F    +A E  VE  ++ + +++   PI       + D     
Sbjct: 766  LPKVHFRTTDEMLDAFSFLGAEKAKEIVVENTQKVASMIEEIKPIKDDLYTPKIDG---- 821

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + E+R  +         +         +    R++ EL  I    F+  +LI    ++ 
Sbjct: 822  ADEEIREMSYQRARSIYGE------ELPEIVEARIEKELKSIIGHGFAVIYLISHKLVKR 875

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            +  +   VG  RGS   S+ A    IT+++PL                            
Sbjct: 876  SLDDGYLVG-SRGSVGSSLVATLTEITEVNPLAPHYVCPSCRYSEFFNDGSVGSGFDLPD 934

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL      +PD D++F  + +     Y +  +G + V +
Sbjct: 935  KSCPSCGTPLKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPHAHNYTKVLFGEDNVYR 994

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V                                            
Sbjct: 995  AGTIGTVAEKTAYGYVKGYAGDH----------------------------------NLH 1020

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVR---SDLPVTQFNM 560
                 +  + Q   G+ R    H  GI  V     +    P+        S+   T F+ 
Sbjct: 1021 MRGAEIDRLVQGCTGVKRTTGQHPGGIIVVPDYMDIYDFSPIQFPADATGSEWKTTHFDF 1080

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDHETYHLL 612
              I    L+K D LG    T+++   D                + +         T   +
Sbjct: 1081 HSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFQGTESLGVTEEQI 1139

Query: 613  -TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
                GTLGI +  +  +RQ LE  +P    +++ +  L                N +E I
Sbjct: 1140 GCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHG-------TDVWLGNAQELI 1192

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
             +    +  ++     +++Y         +  G   S A  +   + K      +     
Sbjct: 1193 HNNTCELSEVIGCRDDIMVYL--------IYQGLEPSLAFKIMEFVRKGKGLTPE----- 1239

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +     KN +      +  ++      Y F K+HAAAY +++ + A+ K H+ + + AA 
Sbjct: 1240 WEEEMKKNNVPNWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHHALLYYAAY 1294

Query: 792  MTLEMDNVEKIKKFCQ---------------------------------DARQFNIQIMP 818
             T+  D+ +                                        +  +       
Sbjct: 1295 FTVRADDFDIDTMIKGSTAIRAVMDDISSKGLDASPKEKNLLTVLELALEMCERGYSFQK 1354

Query: 819  PSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
              +      +F +  N +     +I G+GT  A +I++A  +  F S ED   R    K+
Sbjct: 1355 VDLYRSSASEFIIDGNSLIPPFNSIPGLGTNAALNIVKAREEGEFLSKEDLQKR---GKV 1411

Query: 878  NRRVLESLVFAGALDCF 894
            ++ +LE L   G L+  
Sbjct: 1412 SKTILEYLDRHGCLESL 1428



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++    +  ++++       AIA+TD   + S  +    A   GI+ I 
Sbjct: 335 VELHLHSPMSQMDAVTGIGKLVEQAKKWGHEAIALTDHAVVQSFPDAYSAAKKHGIKMIY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N           +V 
Sbjct: 395 GMEANIVDDGVPIAYNPAHRLLEEDTYVVF 424


>gi|319649525|ref|ZP_08003681.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
 gi|317398687|gb|EFV79369.1| DNA polymerase III subunit alpha [Bacillus sp. 2_A_57_CT2]
          Length = 1441

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 161/938 (17%), Positives = 306/938 (32%), Gaps = 185/938 (19%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             L+  + A   GI        +   Q N  M               LL  T EG + + +
Sbjct: 582  LLKMLKHADEKGI--------EYHDQFNDNMGQGNAYQRARPAHCTLLAQTEEGLKNIFK 633

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  +L +   +  RI  S LQ+    G+++ +G   G +       S    E     +
Sbjct: 634  LVSISHL-EYFYRVPRIPRSVLQK-HRAGILVGSGCDKGEVFEGMMQKSPDEVEDTAQFY 691

Query: 175  K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
               ++    +Y     + L R           +V+L    +LP+VAT N  +L+  D   
Sbjct: 692  DYLEVHPKAVYAHLLELELVRDEKALEEIIGNIVKLGEKLDLPVVATGNVHYLNPNDKIY 751

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
              +L+          + +          N       F    +A E  VE   R + +++ 
Sbjct: 752  RKILVNSQGGANPLNRHQ-LPDVHFRTTNEMLDAFSFLGKDKAKEIVVENTNRIADMIEE 810

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              PI       + +      + E+R+ +                   +    RL+ EL  
Sbjct: 811  IKPIKDDLYTPKIEG----ADEEMRSMSYGMARKIYGDPL------PEIVEARLEKELKS 860

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------- 399
            I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL         
Sbjct: 861  IIGHGFAVIYLISHKLVKRSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPEC 919

Query: 400  ---------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDR 426
                                               + FE FL      +PD D++F  + 
Sbjct: 920  KTSEFFNDGSVGSGFDLPDKDCPNCGAKYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEY 979

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            +     Y +  +G E V +  T G++  K A   V +A Q   +   R  +         
Sbjct: 980  QPRAHNYTKVLFGEEYVYRAGTIGTVADKTAYGYV-KAYQQDNNLQIRGAE--------- 1029

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVP 544
                                    +  ++    G+ R    H  GI  V     +    P
Sbjct: 1030 ------------------------IDRLASGCTGVKRTTGQHPGGIIVVPDYMDIYDFSP 1065

Query: 545  MYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            +         +   T F+   I    L+K D LG    T+++   D          +   
Sbjct: 1066 IQFPADDRTSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG--IDPKTIPTD 1122

Query: 602  PFDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
              +  + +            ++   GTLGI +  +  +RQ LE  +P    +++ +  L 
Sbjct: 1123 DPEVMKIFSGPESLGVTEEQIMCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLS 1182

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
                           N +E I +    +  ++     +++Y         +  G   + A
Sbjct: 1183 HG-------TDVWLGNAQELIHNNICNLSEVIGCRDDIMVYL--------IYQGLEPAFA 1227

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
              +  ++ K      +       +   KN + +    +  ++      Y F K+HAAAY 
Sbjct: 1228 FKIMESVRKGKGLSDE-----MEAEMRKNEVPEWYIDSCKKI-----KYMFPKAHAAAYV 1277

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVE------------------------------ 800
            +++ + A+ K H+P+ + AA  T+  ++ +                              
Sbjct: 1278 LMAVRIAYFKVHHPLLYYAAYFTVRAEDFDVDAMVKGSQAIRSRIEEINAKGLDASTKEK 1337

Query: 801  ---KIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                + +   +  +         +      +F +  N +     +I G+GT  A +I++A
Sbjct: 1338 NLLTVMELALEMNERGFNFQKVDLYRSSANEFIIDGNSLIPPFNSIPGLGTNAAFNIVKA 1397

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              +  F S ED   R    K+++ ++E L   G L+  
Sbjct: 1398 REEGEFLSKEDLQQR---GKVSKTIIEYLDNHGCLESL 1432



 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 32/90 (35%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S++ ++ +       AIAITD     S  E         I+ + 
Sbjct: 340 VELHLHTPMSQMDAVSSVSALVSQAKKWGHKAIAITDHAVAQSFPEAYGAGKKNDIKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           +V 
Sbjct: 400 GIEANLVDDGVPIAYNDAHRKLTEDTYVVF 429


>gi|296330873|ref|ZP_06873348.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC
            6633]
 gi|305674391|ref|YP_003866063.1| DNA polymerase III subunit alpha [Bacillus subtilis subsp. spizizenii
            str. W23]
 gi|296151878|gb|EFG92752.1| DNA polymerase III PolC [Bacillus subtilis subsp. spizizenii ATCC
            6633]
 gi|305412635|gb|ADM37754.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp.
            spizizenii str. W23]
          Length = 1437

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 156/936 (16%), Positives = 294/936 (31%), Gaps = 181/936 (19%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 578  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 629

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 630  LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDVASFY 687

Query: 175  K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
               ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 688  DYLEVQPPEVYRHLLELELVRDEKSLKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 747

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
              +L++                      +       F    +A E  V   ++ + ++  
Sbjct: 748  RKILISSQGGA-NPLNRHELPKVHFRTTDEMLEAFSFLGEEKAKEIVVTNTQKVASLIDD 806

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              PI       + +      + E+R  +         +         +    R++ EL  
Sbjct: 807  IKPIKDDLYTPKIEG----ADEEIREMSYQRARSIYGEQL------PEIVEARIEKELKS 856

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------- 399
            I    F+  +LI    ++ +  +   VG  RGS   S+ A    IT+++PL         
Sbjct: 857  IIGHGFAVIYLISHKLVKRSLDDGYLVG-SRGSVGSSLVATLTEITEVNPLPPHYVCSEC 915

Query: 400  ---------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDR 426
                                               + FE FL      +PD D++F  + 
Sbjct: 916  QHSEFFNDGSVGSGFDLPDKICPHCGTPLKKDGHDIPFETFLGFKGDKVPDIDLNFSGEY 975

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            + +   Y +  +G + V +  T G++  K A   V                         
Sbjct: 976  QPQAHNYTKVLFGEDNVYRAGTIGTVAEKTAYGYV------------------KGYAGDH 1017

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVP 544
                  A+  R                  Q   G+ R    H  GI  V     +    P
Sbjct: 1018 NLHMRGAEVDRL----------------VQGCTGVKRTTGQHPGGIIVVPDYMDIYDFSP 1061

Query: 545  MYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRG 593
            +        S+   T F+   I    L+K D LG    T+++   D              
Sbjct: 1062 IQFPADATGSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDP 1120

Query: 594  VKVDLSLIPFDDHETYHLL-TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
              + +         T   +    GTLGI +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1121 EVMKIFQGTESLGVTEEQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHG 1180

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                         N +E I +    +  ++     +++Y         +  G   S A  
Sbjct: 1181 -------TDVWLGNAQELIHNNICELSEVIGCRDDIMVYL--------IYQGLEPSLAFK 1225

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K      +     +      N +      +  ++      Y F K+HAAAY ++
Sbjct: 1226 IMEFVRKGKGLTPE-----WEEEMKNNNVPDWYIDSCKKI-----KYMFPKAHAAAYVLM 1275

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ------------------------- 807
            + + A+ K H+ + + AA  T+  D+ +                                
Sbjct: 1276 AVRIAYFKVHHALLYYAAYFTVRADDFDIDTMIKGSTAIKAVMEDINSKGLDASPKEKNL 1335

Query: 808  --------DARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                    +  +         +      +F +  N +     +I G+GT  A +I++A  
Sbjct: 1336 LTVLELALEMCERGYSFQKVDLYRSSATEFIIDGNSLIPPFNSIPGLGTNAALNIVKARE 1395

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +  F S ED   R    K+++ +LE L   G L+  
Sbjct: 1396 EGEFLSKEDLQKR---GKVSKTILEYLDRHGCLESL 1428



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++    +  ++++       AIA+TD   + S  +    A   GI+ I 
Sbjct: 335 VELHLHSPMSQMDAVTGIGKLVEQAKKWGHEAIALTDHAVVQSFPDAYSAAKKHGIKMIY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           +V 
Sbjct: 395 GMEANLVDDGVPIAYNAAHRLLEEETYVVF 424


>gi|321315425|ref|YP_004207712.1| DNA polymerase III PolC [Bacillus subtilis BSn5]
 gi|320021699|gb|ADV96685.1| DNA polymerase III PolC [Bacillus subtilis BSn5]
          Length = 1437

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 154/936 (16%), Positives = 293/936 (31%), Gaps = 181/936 (19%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 578  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 629

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 630  LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 687

Query: 175  K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
               ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 688  DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 747

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
              +L++                      +       F    +A E  V   ++ + ++  
Sbjct: 748  RKILISSQGGA-NPLNRHELPKVHFRTTDEMLEAFSFLGEKKAKEIVVTNTQKVASLVDD 806

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              PI       + +      + E+R  +         +         +    R++ EL  
Sbjct: 807  IKPIKDDLYTPKIEG----ADEEIREMSYQRARSIYGE------ELPEIVEARIEKELKS 856

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------- 399
            I    F+  +LI    ++ +  +   VG  RGS   S+ A    IT+++PL         
Sbjct: 857  IIGHGFAVIYLISHKLVKRSLDDGYLVG-SRGSVGSSLVATLTEITEVNPLPPHYVCPEC 915

Query: 400  ---------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDR 426
                                               + FE FL      +PD D++F  + 
Sbjct: 916  QHSEFFNDGSVGSGFDLPDKTCPHCGTPLKKDGHDIPFETFLGFKGDKVPDIDLNFSGEY 975

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            + +   Y +  +G + V +  T G++  K A   V                         
Sbjct: 976  QPQAHNYTKVLFGEDNVYRAGTIGTVAEKTAYGYVKGYAGDN------------------ 1017

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVP 544
                                    +  + Q   G+ R    H  GI  V     +    P
Sbjct: 1018 ----------------NLHMRGAEIDRLVQGCTGVKRTTGQHPGGIIVVPDYMDIYDFSP 1061

Query: 545  MYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRG 593
            +        S+   T F+   I    L+K D LG    T+++   D              
Sbjct: 1062 IQFPADATGSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDP 1120

Query: 594  VKVDLSLIPFDDHETYHLL-TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
              + +         T   +    GTLGI +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1121 EVMKIFQGTESLGVTEEQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHG 1180

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                         N +E I +    +  ++     +++Y         +  G   S A  
Sbjct: 1181 -------TDVWLGNAQELIHNNICELSEVIGCRDDIMVYL--------IYQGLEPSLAFK 1225

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K      +     +      N +      +  ++      Y F K+HAAAY ++
Sbjct: 1226 IMEFVRKGKGLTPE-----WEEEMKNNNVPDWYIDSCKKI-----KYMFPKAHAAAYVLM 1275

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ------------------------- 807
            + + A+ K H+ + + AA  T+  D+ +                                
Sbjct: 1276 AVRIAYFKVHHALLYYAAYFTVRADDFDIDTMIKGSTAIRAVMEDINAKGLDASPKEKNL 1335

Query: 808  --------DARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                    +  +         +      +F +  N +     +I G+GT  A +I++A  
Sbjct: 1336 LTVLELALEMCERGYSFQKVDLYRSSATEFIIDGNSLIPPFNSIPGLGTNAALNIVKARE 1395

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +  F S ED   R    K+++ +LE L   G L+  
Sbjct: 1396 EGEFLSKEDLQKR---GKVSKTILEYLDRHGCLESL 1428



 Score = 89.5 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++    +  ++++       AIA+TD   + S  +    A   GI+ I 
Sbjct: 335 VELHLHSPMSQMDAVTGIGKLVEQAKKWGHEAIALTDHAVVQSFPDAYSAAKKHGIKMIY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           +V 
Sbjct: 395 GMEANLVDDGVPIAYNAAHRLLEEETYVVF 424


>gi|239617281|ref|YP_002940603.1| DNA polymerase III, alpha subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239506112|gb|ACR79599.1| DNA polymerase III, alpha subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 1430

 Score =  233 bits (593), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 154/930 (16%), Positives = 307/930 (33%), Gaps = 186/930 (20%)

Query: 62   ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            A   GI+        I   +NL+      +  P    + +L     G + L ELV+  + 
Sbjct: 581  AKKRGIK-------KIAELENLRKHINISSLRP--LHVTILAKNKTGLRNLYELVTLSHT 631

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTF--KKLF 178
                 +  RI  S L E   EGLI+ +   SG + +A+    ++   E+    F   ++ 
Sbjct: 632  K-YFYKKPRIPKSILLEK-REGLIIGSACISGELSKAYLSGANAAELEEIAKFFDFIEIM 689

Query: 179  GDRL--YVNLQRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
               +  Y   + H   +  +    +  ++     +P+V T +  FL  ED     VL A 
Sbjct: 690  PLDVLDYNEAEAHITRENLKNMYREFYRIGKKLNIPVVMTGDVHFLEPEDAIYRAVLEAA 749

Query: 235  AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                  +   +P +      +       IF D   A E  V+ +R+ + +++  API  +
Sbjct: 750  QE--YQNFDKQPSLYLRTTEEMLEAAKEIFEDEEIAYEVVVKNSRKIALMVENIAPIRGK 807

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                  +      + ++R                      +   +RL+ EL  I    ++
Sbjct: 808  LHPPIIEG----ADEQVRELTYKTAHEIYGDPL------PEIVEKRLEKELRAIIGHGYA 857

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------- 399
              +LI    ++ + ++   VG  RGS   S+ A  L IT+++PL                
Sbjct: 858  VLYLIAQKIVRKSNEDGYVVG-SRGSVGSSLVATMLGITEVNPLPPHYVCPACKHSEFVL 916

Query: 400  --------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
                                       ++ FE FL  +   +PD D++F  + ++    Y
Sbjct: 917  DGSVESGYDLKDKSCPECGALMQKNGQNIPFETFLGFEGDKVPDIDLNFSGEYQERAHAY 976

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
            ++  +G + V +  T  +L  + A   V   ++    Q+ R                   
Sbjct: 977  LEKLFGKDHVFRAGTISTLAERTAYGFVKAYMERSKKQLRRA------------------ 1018

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS 551
                             +  ++  + G+ +    H  G++I    R + +  P+      
Sbjct: 1019 ----------------EIDRLASGIVGVRKTTGQHPGGLMIVPKDRDVHEFTPVQFPAND 1062

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
                T       E       D + +  L     +   + +    VD + +P DD +T  +
Sbjct: 1063 TKSRTMTTHFAYEVIH---DDLVKIDALGHDDPTFIRMLKDITGVDPTTVPMDDKDTLSI 1119

Query: 612  LTTKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
             ++                TLGI +  +  +R  L   +P    +++ +  L        
Sbjct: 1120 FSSTKVLGINPRDLGTDVGTLGIPEFGTQFVRGMLRETRPKTFGELVRISGLSHG----- 1174

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
                    N ++ IVS    +  ++     ++ Y         +  G    +A  +   +
Sbjct: 1175 --TDVWLNNARDWIVSKKATLSDVIACRDDIMNYL--------ISKGIEPLKAFKIMEKV 1224

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K      ++          +  + +    +   +      Y F K+HA AY  + Y+ A
Sbjct: 1225 RKGKGITDEEV-----EMMQEAEVPEWFIESCRRI-----KYLFPKAHAVAYVSMGYRVA 1274

Query: 778  WMKTHYPVEFLAASMTLEMDNVE--------------------------------KIKKF 805
            + K HYP+ F +   T++ D  +                                 + + 
Sbjct: 1275 YFKVHYPLAFYSTYFTIKGDEFDVDLALGDVSGIRKEITNLKNNANKNVKERSKETLLEI 1334

Query: 806  CQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
              + R      +P  +       F +  N +      +K +G   A  I++    +PF S
Sbjct: 1335 VLEMRLRGYSFLPVDLEKSDARRFLIEGNALRIPFNRLKNLGYKVAISIIKEREKRPFSS 1394

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +ED   R     +N+  +E L   GA    
Sbjct: 1395 VEDLLKRTS---INKTHVEILRKYGAFKGL 1421



 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 34/83 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S L+  + +N +   + +    A+A+TD   + S   F   A  +GI+PI 
Sbjct: 331 VELHLHTKMSALDAIVDVNELFKTLKSWGHDAVALTDHGVVQSIPNFYFAAKKSGIKPIF 390

Query: 72  GCQLDIDMQDNLKMTNQGKTPFP 94
           G +  +       +         
Sbjct: 391 GMEGYMVNDSEPIVREIEDKNLE 413


>gi|213609969|ref|ZP_03369795.1| DNA polymerase III subunit alpha [Salmonella enterica subsp. enterica
            serovar Typhi str. E98-2068]
          Length = 338

 Score =  233 bits (593), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 64/209 (30%), Positives = 96/209 (45%), Gaps = 4/209 (1%)

Query: 828  FKVGD-NRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F V D   I Y + AIKGVG      I++A      F  L D C+R D+KKLNRRVLE L
Sbjct: 1    FHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKL 60

Query: 886  VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFS 944
            + +GA D  G  R  L+ SL +  K A    K       ++F    +     + +     
Sbjct: 61   IMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ 120

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVS 1003
                 V  + E+  LG Y +GHP++ Y   + +  G    ++   T RG     A +V++
Sbjct: 121  PWPEQVVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIA 180

Query: 1004 KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   T++G+RIG  T  + +   E   F
Sbjct: 181  ARVMVTKRGNRIGICTLDDRSGRLEVMLF 209


>gi|205373423|ref|ZP_03226227.1| DNA polymerase III PolC [Bacillus coahuilensis m4-4]
          Length = 1436

 Score =  233 bits (593), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 151/919 (16%), Positives = 293/919 (31%), Gaps = 177/919 (19%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++    Q N  M               L+     G + L +L+S  +L     +  RI  
Sbjct: 588  EIKYHDQLNDYMGEGDSYKRARPYHCTLIAQNDTGLKNLFKLISISHLH-YFHRVPRIPR 646

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY-----VNL 186
            S LQ+   EG+++ +G   G +       S +  E +   +   ++    +Y     + L
Sbjct: 647  SVLQKY-REGILVGSGCDKGEVFEGMMQKSPEEVEDKARFYDYFEVHPKEVYSHLIELEL 705

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             +           +V L    E P+VA+ N  +   +D     +L+              
Sbjct: 706  VQSEKNLEDIIHNIVALGEKLETPVVASGNVHYKDPKDSIYRKILIGSQGGA-NPLNRHN 764

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                     +       F    +A E  V      + ++    PI       + D     
Sbjct: 765  LPKVHFRTTDEMLHAFEFLGNEKAKEIVVTNTNLIADMIDEIKPIKDDLYTPKIDG---- 820

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + E+R  + +  +    +         +    R++ EL  I    F+  +LI    ++ 
Sbjct: 821  ADEEIRRMSYSMAKSIYGENL------PEIVEARIEKELKSIIGHGFAVIYLISHKLVKK 874

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            +  +   VG  RGS   S  A    IT+++PL                            
Sbjct: 875  SLIDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPTCKKSEFFDDGSVGSGFDLSN 933

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL      +PD D++F  + +     Y +  +G + V +
Sbjct: 934  KSCPDCDVPYTKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHDYTKVLFGEDNVFR 993

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V       Y+  + L                              
Sbjct: 994  AGTIGTVAEKTAFGYV-----KGYASDNNLTIRGAE------------------------ 1024

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNM 560
                 +  + +   G+ R    H  GI+       +    P+         +   T F+ 
Sbjct: 1025 -----VDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFSPIQFPADDRTSEWKTTHFDF 1079

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY----------- 609
              I    L+K D LG    T+++   D          +     +  + +           
Sbjct: 1080 HSIHD-NLLKLDILGHDDPTVIRMLQDLSG--IDPKTIPTDDPEVMKIFSGTESLGVTEE 1136

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             +L   GTLGI +  +  +RQ LE  +P    +++ +  L                N +E
Sbjct: 1137 QILCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHG-------TDVWLGNAQE 1189

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I +    +  ++     +++Y         +  G   S A  +  ++ K    + +   
Sbjct: 1190 LIHNQTCTLSEVIGCRDDIMVYL--------IYQGLEPSLAFKIMESVRKGKGLQPE--- 1238

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
                    KN +      +  ++      Y F K+HAAAY +++ + A+ K H+P+ + A
Sbjct: 1239 --MEEEMKKNNVPDWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHHPILYYA 1291

Query: 790  ASMTLEMDNVE---------KIKKFCQDARQFNIQIMP---------------------- 818
            A  T+  ++ +          I+   ++     +   P                      
Sbjct: 1292 AYFTVRAEDFDVDAMAKGPMSIRAKVEEILAKGLDAAPKEKSLLTVLELALEMTERGFSF 1351

Query: 819  ---PSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                   +   +F +  N +     AI G+GT  A +I++A  +  F S ED   R    
Sbjct: 1352 QKVHLYKSHASEFIIEGNTLIPPFNAIPGLGTNAAINIVKAREEGEFLSKEDLQQR---G 1408

Query: 876  KLNRRVLESLVFAGALDCF 894
            K+++ ++E L   G L   
Sbjct: 1409 KVSKTIIEYLDNHGCLGSL 1427



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/384 (11%), Positives = 111/384 (28%), Gaps = 54/384 (14%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S   ++ + A     AIAITD     S  E        GI+ + 
Sbjct: 335 VELHLHTPMSSMDAVTSTGELVAQAAKWGHKAIAITDHAVAQSFPEAYGAGKKNGIKILY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL------LVSTAEGYQRLIEL---------- 115
           G + ++         N      P    IV       L +    Y  +IEL          
Sbjct: 395 GVEANLVDDGVPIAYNTSHRFLPESTYIVFDVETTGLSAN---YDTIIELAAVKVFDGEI 451

Query: 116 -------------VSR------MYLLDQGKQSVRIC--LSWLQEIGTEGLIMLTGGSSGP 154
                        +S           D  K +  +   ++  ++   +G+++    +S  
Sbjct: 452 IDRFERFANPHHPLSATTINLTGITDDMVKDAPEVSEVVTDFKKWAEDGILV-AHNASFD 510

Query: 155 IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVAT 214
           +            +K              + L R   Y   +  ++  LA   ++ L   
Sbjct: 511 MGFLNISYQRAGLKKASNPVIDT------LELARF-LYPSMKNHRLNTLAKKLDVELTQH 563

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENT 274
           + +++    D EA   ++A        ++ +     + Y+                +   
Sbjct: 564 HRAIY----DAEATGYILAKLLKETYEKEIKYHDQLNDYMGEGDSYKRARPYHCTLIAQN 619

Query: 275 VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
               +    ++ +        + +    + ++          +G +       + +    
Sbjct: 620 DTGLKNLFKLISISHLHYFHRVPRIPRSVLQKYREG--ILVGSGCDKGEVFEGMMQKSPE 677

Query: 335 QDYRQRLDFELNVIARMKFSGYFL 358
           +   +   ++   +   +   + +
Sbjct: 678 EVEDKARFYDYFEVHPKEVYSHLI 701


>gi|291484213|dbj|BAI85288.1| DNA polymerase III PolC [Bacillus subtilis subsp. natto BEST195]
          Length = 1437

 Score =  233 bits (593), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 154/936 (16%), Positives = 293/936 (31%), Gaps = 181/936 (19%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 578  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 629

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 630  LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 687

Query: 175  K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
               ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 688  DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 747

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
              +L++                      +       F    +A E  V   ++ + ++  
Sbjct: 748  RKILISSQGGA-NPLNRHELPKVHFRTTDEMLEAFSFLGEEKAKEIVVTNTQKVASLVDD 806

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              PI       + +      + E+R  +         +         +    R++ EL  
Sbjct: 807  IKPIKDDLYTPKIEG----ADEEIREMSYQRARSIYGE------ELPEIVEARIEKELKS 856

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------- 399
            I    F+  +LI    ++ +  +   VG  RGS   S+ A    IT+++PL         
Sbjct: 857  IIGHGFAVIYLISHKLVKRSLDDGYLVG-SRGSVGSSLVATLTEITEVNPLPPHYVCPEC 915

Query: 400  ---------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDR 426
                                               + FE FL      +PD D++F  + 
Sbjct: 916  QHSEFFNDGSVGSGFDLPDKTCPHCGTPLKKEGHDIPFETFLGFKGDKVPDIDLNFSGEY 975

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            + +   Y +  +G + V +  T G++  K A   V                         
Sbjct: 976  QPQAHNYTKVLFGEDNVYRAGTIGTVAEKTAYGYVKGYAGDN------------------ 1017

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVP 544
                                    +  + Q   G+ R    H  GI  V     +    P
Sbjct: 1018 ----------------NLHMRGAEIDRLVQGCTGVKRTTGQHPGGIIVVPDYMDIYDFSP 1061

Query: 545  MYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRG 593
            +        S+   T F+   I    L+K D LG    T+++   D              
Sbjct: 1062 IQFPADATGSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDP 1120

Query: 594  VKVDLSLIPFDDHETYHLL-TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
              + +         T   +    GTLGI +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1121 EVMKIFQGTESLGVTEEQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHG 1180

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                         N +E I +    +  ++     +++Y         +  G   S A  
Sbjct: 1181 -------TDVWLGNAQELIHNNICELSEVIGCRDDIMVYL--------IYQGLEPSLAFK 1225

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K      +     +      N +      +  ++      Y F K+HAAAY ++
Sbjct: 1226 IMEFVRKGKGLTPE-----WEEEMKNNNVPDWYIDSCKKI-----KYMFPKAHAAAYVLM 1275

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ------------------------- 807
            + + A+ K H+ + + AA  T+  D+ +                                
Sbjct: 1276 AVRIAYFKVHHALLYYAAYFTVRADDFDIDTMIKGSTAIRAVMEDINAKGLDASPKEKNL 1335

Query: 808  --------DARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                    +  +         +      +F +  N +     +I G+GT  A +I++A  
Sbjct: 1336 LTVLELALEMCERGYSFQKVDLYRSSATEFIIDGNSLIPPFNSIPGLGTNAALNIVKARE 1395

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +  F S ED   R    K+++ +LE L   G L+  
Sbjct: 1396 EGEFLSKEDLQKR---GKVSKTILEYLDRHGCLESL 1428



 Score = 89.5 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++    +  ++++       AIA+TD   + S  +    A   GI+ I 
Sbjct: 335 VELHLHSPMSQMDAVTGIGKLVEQAKKWGHEAIALTDHAVVQSFPDAYSAAKKHGIKMIY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           +V 
Sbjct: 395 GMEANLVDDGVPIAYNAAHRLLEEETYVVF 424


>gi|150390440|ref|YP_001320489.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens QYMF]
 gi|149950302|gb|ABR48830.1| DNA polymerase III, alpha subunit [Alkaliphilus metalliredigens QYMF]
          Length = 1432

 Score =  233 bits (593), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 157/938 (16%), Positives = 307/938 (32%), Gaps = 197/938 (21%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F +             ++    + N K+             I++     +G + L ++
Sbjct: 576  VKFIELLKQK--------EVYTLEEVNTKLVKDVDYKKLDTYHIMIYAKNQKGLKNLYQI 627

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +S  +L +   +  R+  S L +   EGL++ T   +G + ++   N  +   ++  ++ 
Sbjct: 628  ISESHL-EYFYKKPRVPKSILTKY-REGLLIGTACEAGELYKSILGNKPESDIEKTASYY 685

Query: 176  KLFGDRLYVNLQ--------------RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLS 221
                   Y+ +Q                    +    ++V L     LP++AT +  FL 
Sbjct: 686  D------YLEIQPISNNQFLLEKGMVNTTEELQNINKKIVALGNKINLPVIATGDVHFLD 739

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
              D E    ++        +    P                       A +  V   R+ 
Sbjct: 740  PND-EVFRKILMAGQGFTDADNQAPLYLKTTDEMLDEFRYLGSK---TAKDVVVNNPRKL 795

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            +  ++   PI       E +      + ELR       E              +  + RL
Sbjct: 796  NEEIEKLIPIPDGTFPPEIEG----SDEELRRMCYEKAERIYGNP------IPEIVKTRL 845

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-- 399
            D ELN I    ++  ++I    +  + ++   VG  RGS   S  A    IT+++PL   
Sbjct: 846  DKELNSIISNGYAVMYIIAQKLVTKSLRDGYLVG-SRGSVGSSFAATMSDITEVNPLAPH 904

Query: 400  ---------------------------------------FSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL  +    PD D+
Sbjct: 905  YVCPECRYSEFITDGSYGSGADLPDKKCPECHGQLIKDGHEIPFEVFLGFEGDKEPDIDL 964

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  + + E   Y +  +G  +V +  T G++  K A   V + L+              
Sbjct: 965  NFAGEYQSEAHHYTEELFGKGKVYRAGTIGTIADKTAYGFVKKYLE-------------- 1010

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
                                 R    +   +  ++    G+ R +  H  G++I    L 
Sbjct: 1011 --------------------ERELYYTSAEVNRLTMGCTGVKRTSGQHPGGVMIVPANLD 1050

Query: 541  --QLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
              +  P+     D  S +    F+   I    L+K D LG    T+++   D       +
Sbjct: 1051 VHEFSPIQYPANDSTSGVITMHFDYHSI-SGRLLKLDILGHDVPTIIKMLEDLTGINAQE 1109

Query: 596  VDLSLIPFDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
            + L         T           L    GTLGI +  +  +RQ L   +P    +++ +
Sbjct: 1110 IPLDDEKTISLFTTTKNLGIDPKELGCEVGTLGIPEFGTKFVRQMLLDTKPSTFGELVRI 1169

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
              L                N ++ + +    +  ++     ++ Y         +L G  
Sbjct: 1170 SGLSHG-------TDVWLNNAQDLVRNNIAELKDVISTRDDIMNYL--------MLKGLP 1214

Query: 707  LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
               A  +   + K    + +++         +N + +    +  ++      Y F K+HA
Sbjct: 1215 PKSAFKIMENVRKGKGLKPEEE-----QLMKENNVPEWYIDSCKKI-----KYMFPKAHA 1264

Query: 767  AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------------------- 800
            AAY ++S++ A+ K HYP  F A   T + ++ +                          
Sbjct: 1265 AAYVMMSFRIAYCKVHYPQAFYATYFTTKAEDFDAHLIGKGKAVVKSKIDELELMGNDLT 1324

Query: 801  -------KIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARH 852
                    + +   +    NI+++   V     D F + D ++   L A++GVG   AR+
Sbjct: 1325 AKDKNFLTVLEVALELYCRNIELLSVDVYKSDPDKFTIIDGKLLPPLRALQGVGQNAARN 1384

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
            I +      F S ED   R    K+ + V+E+L   G 
Sbjct: 1385 IAKVREAGEFLSKEDLRERA---KVTKTVIEALTNHGC 1419



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 33/86 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           +   +H+  S ++G  S + ++ + A     AIAITD   + +  E        GI+ I 
Sbjct: 335 IEFHMHTKMSSMDGVSSTSELVKRAADWGHEAIAITDHGVVQAFPEAMDAGKKHGIKVIY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +   +   + N          
Sbjct: 395 GMEGYLINDEAKIIPNATLYSLDDEY 420


>gi|294500902|ref|YP_003564602.1| DNA polymerase III subunit alpha [Bacillus megaterium QM B1551]
 gi|294350839|gb|ADE71168.1| DNA polymerase III, alpha subunit [Bacillus megaterium QM B1551]
          Length = 1436

 Score =  233 bits (593), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 157/919 (17%), Positives = 289/919 (31%), Gaps = 177/919 (19%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++ +  + N  M               LL     G + L +LVS  +L +   +  RI  
Sbjct: 588  EITMHDRLNDYMGEGNAYQRARPYHATLLAQNDVGLKNLFKLVSISHL-NYFYRVPRIPR 646

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT--FKKLFGDRLY-----VNL 186
            S L +   EG+++ T    G +            E       + ++     Y     ++L
Sbjct: 647  SQLDKY-REGILIGTACDRGEVFEGMMQKGIDEVEGAAEFYDYIEVQPPDNYKHLIELDL 705

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R     +   S +V+L      P+VAT N  +L+ ED     +L+          + + 
Sbjct: 706  VRDEKALKDIISNIVKLGEKIGKPVVATGNVHYLNPEDKIYRKILIGSQGGANPLNRHQ- 764

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                     +       F D  +A E  V   ++ + ++    PI       + +     
Sbjct: 765  LPDVHFRSTDEMLNCFSFLDGDKAKEIVVHNTQKIADMIDDIKPIKDDLYTPKIEG---- 820

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + E+R  + A       +         +    RL+ EL  I    F+  +LI    ++ 
Sbjct: 821  ADEEMREMSYAMARSIYGE------ELPEVVEARLEKELKSIIGHGFAVIYLISHKLVKK 874

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            +  +   VG  RGS   S  A    IT+++PL                            
Sbjct: 875  SLNDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPKCKKSEFFNDGSVGSGFDLPD 933

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL      +PD D++F  + +     Y +  +G + V +
Sbjct: 934  KSCEDCGVPFIKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGQDNVYR 993

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V                               A+  R        
Sbjct: 994  AGTIGTVAEKTAYGYV------------------KGYAGDRDLHLRNAEVDRL------- 1028

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS---DLPVTQFNM 560
                          G+ R    H  GI  V     +    P+         +   T F+ 
Sbjct: 1029 ---------VAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADDRNSEWRTTHFDF 1079

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY----------- 609
              I    L+K D LG    T+++   D          +     +  + +           
Sbjct: 1080 HSIHD-NLLKLDILGHDDPTVIRMLQDLSG--IDPKTIPTDDPEVMKIFSGTESLGVTEE 1136

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             ++   GTLGI +  +  +RQ LE  +P    +++ +  L                N +E
Sbjct: 1137 QIMCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHG-------TDVWLGNAQE 1189

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I +    +  ++     +++Y         +  G   S A  +  ++ K      +   
Sbjct: 1190 LIRNDICNLSEVIGCRDDIMVYL--------IYQGLEPSLAFKIMESVRKGKGLTPE--- 1238

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              F     KNG+      +  ++      Y F K+HAAAY +++ + A+ K H+ + + A
Sbjct: 1239 --FEEEMIKNGVPDWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHHALLYYA 1291

Query: 790  ASMTLEMDNVEKIKKFCQ---------------------------------DARQFNIQI 816
            A  T+  D+ +                                        +  +     
Sbjct: 1292 AYFTVRADDFDIDTMIKGSTAIRAKMEEINAKGLDASPKEKNLLTVLELSLEMCERGYSF 1351

Query: 817  MPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +     D F +    +     AI G+GT  A +I++A     F S ED   R    
Sbjct: 1352 KKVDLYKSSADEFLIDGTSLVPPFNAIPGLGTNAALNIVKARETGEFLSKEDLQQR---G 1408

Query: 876  KLNRRVLESLVFAGALDCF 894
            K+++ +LE L   G L+  
Sbjct: 1409 KVSKTILEYLDNHGCLESL 1427



 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S+  ++ +      PA+AITD     S  E        GI+ + 
Sbjct: 335 VELHLHTPMSQMDAVSSVGALVGQAKKWGHPAVAITDHAVAQSFPEAYGAGKKNGIKILY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G ++++         N           +V 
Sbjct: 395 GVEVNLVDDGVPIAYNPQHVDLTEATYVVF 424


>gi|16078721|ref|NP_389540.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309536|ref|ZP_03591383.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313860|ref|ZP_03595665.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. NCIB
            3610]
 gi|221318783|ref|ZP_03600077.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str.
            JH642]
 gi|221323055|ref|ZP_03604349.1| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. SMY]
 gi|118793|sp|P13267|DPO3_BACSU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|40060|emb|CAA36362.1| unnamed protein product [Bacillus subtilis]
 gi|2634030|emb|CAB13531.1| DNA polymerase III (alpha subunit) [Bacillus subtilis subsp. subtilis
            str. 168]
          Length = 1437

 Score =  233 bits (593), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 154/936 (16%), Positives = 293/936 (31%), Gaps = 181/936 (19%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 578  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 629

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 630  LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 687

Query: 175  K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
               ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 688  DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 747

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
              +L++                      +       F    +A E  V   ++ + ++  
Sbjct: 748  RKILISSQGGA-NPLNRHELPKVHFRTTDEMLEAFSFLGEEKAKEIVVTNTQKVASLVDD 806

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              PI       + +      + E+R  +         +         +    R++ EL  
Sbjct: 807  IKPIKDDLYTPKIEG----ADEEIREMSYQRARSIYGE------ELPEIVEARIEKELKS 856

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------- 399
            I    F+  +LI    ++ +  +   VG  RGS   S+ A    IT+++PL         
Sbjct: 857  IIGHGFAVIYLISHKLVKRSLDDGYLVG-SRGSVGSSLVATLTEITEVNPLPPHYVCPEC 915

Query: 400  ---------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDR 426
                                               + FE FL      +PD D++F  + 
Sbjct: 916  QHSEFFNDGSVGSGFDLPDKTCPHCGTPLKKDGHDIPFETFLGFKGDKVPDIDLNFSGEY 975

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            + +   Y +  +G + V +  T G++  K A   V                         
Sbjct: 976  QPQAHNYTKVLFGEDNVYRAGTIGTVAEKTAYGYVKGYAGDN------------------ 1017

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVP 544
                                    +  + Q   G+ R    H  GI  V     +    P
Sbjct: 1018 ----------------NLHMRGAEIDRLVQGCTGVKRTTGQHPGGIIVVPDYMDIYDFSP 1061

Query: 545  MYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRG 593
            +        S+   T F+   I    L+K D LG    T+++   D              
Sbjct: 1062 IQFPADATGSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDP 1120

Query: 594  VKVDLSLIPFDDHETYHLL-TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
              + +         T   +    GTLGI +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1121 EVMKIFQGTESLGVTEEQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHG 1180

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                         N +E I +    +  ++     +++Y         +  G   S A  
Sbjct: 1181 -------TDVWLGNAQELIHNNICELSEVIGCRDDIMVYL--------IYQGLEPSLAFK 1225

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K      +     +      N +      +  ++      Y F K+HAAAY ++
Sbjct: 1226 IMEFVRKGKGLTPE-----WEEEMKNNNVPDWYIDSCKKI-----KYMFPKAHAAAYVLM 1275

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ------------------------- 807
            + + A+ K H+ + + AA  T+  D+ +                                
Sbjct: 1276 AVRIAYFKVHHALLYYAAYFTVRADDFDIDTMIKGSTAIRAVMEDINAKGLDASPKEKNL 1335

Query: 808  --------DARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                    +  +         +      +F +  N +     +I G+GT  A +I++A  
Sbjct: 1336 LTVLELALEMCERGYSFQKVDLYRSSATEFIIDGNSLIPPFNSIPGLGTNAALNIVKARE 1395

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +  F S ED   R    K+++ +LE L   G L+  
Sbjct: 1396 EGEFLSKEDLQKR---GKVSKTILEYLDRHGCLESL 1428



 Score = 89.5 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++    +  ++++       AIA+TD   + S  +    A   GI+ I 
Sbjct: 335 VELHLHSPMSQMDAVTGIGKLVEQAKKWGHEAIALTDHAVVQSFPDAYSAAKKHGIKMIY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           +V 
Sbjct: 395 GMEANLVDDGVPIAYNAAHRLLEEETYVVF 424


>gi|125973511|ref|YP_001037421.1| DNA polymerase III PolC [Clostridium thermocellum ATCC 27405]
 gi|125713736|gb|ABN52228.1| DNA polymerase III catalytic subunit, PolC type [Clostridium
            thermocellum ATCC 27405]
          Length = 1442

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 148/927 (15%), Positives = 292/927 (31%), Gaps = 191/927 (20%)

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTV--PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             + ++   D+++   +G   +        ++LV    G + L ++VS+ +L +   +  R
Sbjct: 592  AEKNVKTIDDIQNVFEGCWNYQKANSYHAIILVKNYVGLRNLYKIVSKTHL-EYFHKRPR 650

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            +    L  +  EGLI+ +   +G + RA   N  +    R++ F        Y+ +Q   
Sbjct: 651  LPRKLLM-MHREGLILGSACEAGELYRAILENKDEDEISRIVKFYD------YLEIQPLG 703

Query: 191  --------------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
                             +    ++V L   +  P+VAT +  F+  +D E    ++    
Sbjct: 704  NNRFLVESGKVNSEEDLKNINRKIVALGEKYNKPVVATCDVHFMDPQD-EVFRRILMAGQ 762

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
                +    P                      E +     +       +           
Sbjct: 763  GFSDADNQAPLYFRTTDEMLEEFEYLGREKCYEVVVTNTNLIADMCEDIL-------PIP 815

Query: 297  EKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGY 356
            E       +  E E+R  A                   +   +R++ ELN I +  FS  
Sbjct: 816  EGTFPPKIEGAEEEIRMLAENKAREIYGDPL------PEIVEKRMEKELNSIIKNGFSVM 869

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------- 399
            ++I    +  +  +   VG  RGS   S  AY + IT+++ L                  
Sbjct: 870  YIIAQKLVWKSLSDGYLVG-SRGSVGSSFVAYLIGITEVNSLPPHYICENCKYSEFIEDG 928

Query: 400  ------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                    + + FE FL  +    PD D++F  + +    +Y +
Sbjct: 929  SYGCGFDMPEKECPRCGKILKKDGYDIPFETFLGFEGDKEPDIDLNFSGEYQPIAHKYTE 988

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G   V +  T G++  K A   V   L                              
Sbjct: 989  ELFGVGHVYRAGTIGTIAEKTAYGFVKNYLD----------------------------- 1019

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYR---DVR 550
                  R    +   +  + +   G+ R    H  G++I  +   + +  P+     D  
Sbjct: 1020 -----ERGIVATNAEINRLVKGCTGVKRTTGQHPGGVMIVPQDREIYEFCPIQYPADDPD 1074

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL---------AQRGVKVDLSLI 601
            S    T F+   I    L+K D LG    T+++   D            ++      S  
Sbjct: 1075 SGTITTHFDYHSI-SGRLLKLDILGHDDPTVIKMLEDLTGVNARTIPIGEKRTMGIFSST 1133

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
                     +    GT  I +  +  +RQ L   +P    ++I +  L            
Sbjct: 1134 EPLGIRPEDINCPVGTFAIPEFGTKFVRQMLVDTKPKTFSELIRISGLSHG-------TD 1186

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
                N ++ + +    +  ++     +++          +  G     A  +   + K  
Sbjct: 1187 VWLNNAQDLVRNNIASLSEVICTRDDIML--------NLIHYGLPNKTAFKIMEDVRKGK 1238

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              + + ++             +    + +    K   Y F K+HAAAY +++++ AW K 
Sbjct: 1239 GLKEEYEQIMR----------EKKVPDWYIESCKKIKYMFPKAHAAAYVMMAFRIAWFKV 1288

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFC---------------------------------QD 808
            +YP  F A   T+  D  +                                        +
Sbjct: 1289 YYPEAFYATYFTVRADEFDASMMCHGKEKVKNKIKEYELKGNNMTQKEKNTLTILEVANE 1348

Query: 809  ARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
                 I+ +P  +       FK+  + +   L A++G+G + A  I +A     F S++D
Sbjct: 1349 MYARGIKFLPIDIYKSDAVKFKIEKDGLRPPLNALQGLGVSAAHSIAQARNQGEFLSVDD 1408

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCF 894
               R    K+++ V+E L   G LD  
Sbjct: 1409 LRIRA---KVSKTVIEILQQNGCLDGL 1432



 Score = 99.5 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 35/86 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++G  S+  ++ + A     AIA+TD   + +  E  + A    I+ I 
Sbjct: 344 VELHLHTQMSAMDGVTSVGELIKRAAQWGHKAIAVTDHGVVQAYPEACEAAKKNKIKVIY 403

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       + +    P     
Sbjct: 404 GIEAYLLDDSVPIVYHANGHPVDGEF 429


>gi|219523926|ref|YP_002455987.1| DNA polymerase [Pseudomonas phage PB1]
 gi|190333522|gb|ACE73777.1| DNA polymerase [Pseudomonas phage PB1]
          Length = 1035

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 193/858 (22%), Positives = 346/858 (40%), Gaps = 88/858 (10%)

Query: 10  SFVHLQVHSSYSLLEGAL--SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           SF  L+V S YS   GA       I+++    + P +AI D    +  + + Q A  A +
Sbjct: 2   SFPQLRVRSGYS--YGAAYGRFPEIIERAKEIESPFVAIVDDGT-WGHVRWEQAATKAEL 58

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
               G ++ I   D+     + K           L       ++   L S+   +     
Sbjct: 59  PRGFGMEIPIKCADDGDKELKLKAW--------ALAKDT---RKFYRLTSK--TVQNQGL 105

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
           S +           +G+I      +G                    +  +    +   + 
Sbjct: 106 SPQEFQD------ADGVI----KFAGEAYAYLDLAGID--------YIDINPASM---VA 144

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-MAVAHSTVVSQKDRP 246
            H   +          A     P+V T+ +   S +  +      +  +        +  
Sbjct: 145 AHGAMET---------ARAFGKPVVITSYNDMPSIDHADFASAWKVRESVGLRHIATEEE 195

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 ++  R E     ++    +E  V++    + ++ +                   
Sbjct: 196 LWARLRHIMTREEFDKAVANTHAVVEQLVDVKLAKAPMIHL------------------- 236

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            + ++   A  G   RL++G I      Q Y  R   E+  I    F  YFL+VAD + +
Sbjct: 237 -DGDIVALAREGQAYRLSRGHIK--EWTQVYEDRFQEEIKQIQLKDFDSYFLVVADLVAF 293

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           AKK ++ VGP RGS AGS+  Y L IT++DPL   LLF+RF++  R  +PD DIDF    
Sbjct: 294 AKK-HMLVGPARGSSAGSLVCYLLGITEVDPLPHRLLFQRFIDISRSDLPDIDIDFADTH 352

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL-IPNDPAH 485
           R  V  Y+Q KYG   V ++    +L+A + +  VG+   +P+   D +    I    A 
Sbjct: 353 RYLVFEYLQQKYGTWNVVKLGNINTLKAASVIAHVGKRFGIPFHDTDNIKNSIIEYTSAD 412

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEG-LYRHASTHAAGIVIGDRPLSQLVP 544
               + + D     +          +             H+  HAAGI++ +  +     
Sbjct: 413 ERYGKGLEDTFEKTQPGRDFREKYEIASACMGDLEIHPSHSGVHAAGILVCNDEVIDFCT 472

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
           +  +      V Q +    E   L+K D LGL+TL ++Q +    AQ      L  +P +
Sbjct: 473 VTSEG-----VAQLDKPDSEYLNLLKIDALGLRTLGVIQDANCVTAQE-----LYDLPLN 522

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662
           D     +L      GIFQ E   +R     +     E+I  + +L RPGP+ + +   Y 
Sbjct: 523 DKAVLDVLNEDKMSGIFQFEGQAVRSVANAINITAFENIDHITALARPGPLSSGMATKYI 582

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKI 721
            R  G+E +    P ++  L  T GV +YQEQ+M I + +  +   +   +R+AM  +K 
Sbjct: 583 ERVAGREPVTYTIPQVEQYLSGTYGVFLYQEQIMSIVKDIGQFDWEQTSAIRKAMSARKG 642

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
           +E  +K++E FI GA   G++   A  +++ +  F  +GFN+SH+ +YAV++Y T +MK 
Sbjct: 643 EEFFNKRRELFIEGAKTIGVAPEDAHRVWQEMVTFGAWGFNRSHSVSYAVVTYWTCYMKR 702

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           ++ +E+ AA +    D+ + +    ++  +  ++          +++ V D R+   +  
Sbjct: 703 YHRLEYAAACLRAAKDDQQTVSIL-RELAKEGVEYTALDPEHSELNWVVADGRLIGGIMN 761

Query: 842 IKGVGTTTARHIMEASAD 859
            KG G   A   +    +
Sbjct: 762 AKGFGPAKAERFLRLREE 779


>gi|154686075|ref|YP_001421236.1| DNA polymerase III PolC [Bacillus amyloliquefaciens FZB42]
 gi|154351926|gb|ABS74005.1| PolC [Bacillus amyloliquefaciens FZB42]
          Length = 1437

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 152/917 (16%), Positives = 286/917 (31%), Gaps = 173/917 (18%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +    Q N  M               LL     G + L +LVS  ++     +  RI  
Sbjct: 589  DIFYHDQLNENMGQSNAYQRSRPYHATLLAVNETGLKNLFKLVSISHIQ-YFYRVPRIPR 647

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY-----VNL 186
            S L +   EGL++ +    G +       S +  E     +   ++    +Y     + L
Sbjct: 648  SQLNKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLEVQPPEVYRHLLQLEL 706

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R     +   + + +L      P+VAT N  +L++ED     +L++             
Sbjct: 707  VRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIYRKILISSQGGA-NPLNRHE 765

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                     +       F    +A E  V+  ++ + ++    PI       + D     
Sbjct: 766  LPKVHFRTTDEMLEAFSFLGAEKAKEIVVDNTQKVASMIDEIKPIKDDLYTPKIDG---- 821

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + E+R  +         +         +    R++ EL  I    F+  +LI    ++ 
Sbjct: 822  ADEEIREMSYQRARSIYGE------ELPEIVEARIEKELKSIIGHGFAVIYLISHKLVKR 875

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            +  +   VG  RGS   S+ A    IT+++PL                            
Sbjct: 876  SLDDGYLVG-SRGSVGSSLVATLTEITEVNPLAPHYVCPSCRYSEFFNDGSVGSGFDLPD 934

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL      +PD D++F  + +     Y +  +G + V +
Sbjct: 935  KSCPSCGTPLKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPHAHNYTKVLFGEDNVYR 994

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V                                            
Sbjct: 995  AGTIGTVAEKTAYGYVKGYAGDH----------------------------------NLH 1020

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVR---SDLPVTQFNM 560
                 +  + Q   G+ R    H  GI  V     +    P+        S+   T F+ 
Sbjct: 1021 MRGAEIDRLVQGCTGVKRTTGQHPGGIIVVPDYMDIYDFSPIQFPADATGSEWKTTHFDF 1080

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDHETYHLL 612
              I    L+K D LG    T+++   D                + +         T   +
Sbjct: 1081 HSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFQGTESLGVTEEQI 1139

Query: 613  -TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
                GTLGI +  +  +RQ LE  +P    +++ +  L                N +E I
Sbjct: 1140 GCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHG-------TDVWLGNAQELI 1192

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
             +    +  ++     +++Y         +  G   S A  +   + K      +     
Sbjct: 1193 HNNTCELSEVIGCRDDIMVYL--------IYQGLEPSLAFKIMEFVRKGKGLTPE----- 1239

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +     KN +      +  ++      Y F K+HAAAY +++ + A+ K H+ + + AA 
Sbjct: 1240 WEEEMKKNNVPNWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHHALLYYAAY 1294

Query: 792  MTLEMDNVEKIKKFCQ---------------------------------DARQFNIQIMP 818
             T+  D+ +                                        +  +       
Sbjct: 1295 FTVRADDFDIDTMIKGSTAIRAVMDDISSKGLDASPKEKNLLTVLELALEMCERGYSFQK 1354

Query: 819  PSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
              +      +F +  N +     +I G+GT  A +I++A  +  F S ED   R    K+
Sbjct: 1355 VDLYRSSASEFIIDGNSLIPPFNSIPGLGTNAALNIVKARKEGEFLSKEDLQKR---GKV 1411

Query: 878  NRRVLESLVFAGALDCF 894
            ++ +LE L   G L+  
Sbjct: 1412 SKTILEYLDRHGCLESL 1428



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++    +  ++++       AIA+TD   + S  +    A   GI+ I 
Sbjct: 335 VELHLHSPMSQMDAVTGIGKLVEQAKKWGHEAIALTDHAVVQSFPDAYSAAKKHGIKMIY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N           +V 
Sbjct: 395 GMEANIVDDGVPIAYNPAHRLLEEDTYVVF 424


>gi|149408369|ref|YP_001294472.1| hypothetical protein ORF055 [Pseudomonas phage F8]
          Length = 1035

 Score =  232 bits (591), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 192/858 (22%), Positives = 345/858 (40%), Gaps = 88/858 (10%)

Query: 10  SFVHLQVHSSYSLLEGAL--SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           SF  L+V S YS   GA       I+++    + P +AI D    +  + + Q A  A +
Sbjct: 2   SFPQLRVRSGYS--YGAAYGRFPEIIERAKEIESPFVAIVDDGT-WGHVRWEQAATKAEL 58

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
               G ++ I   D+     + K           L       ++   L S+   +     
Sbjct: 59  PRGFGMEIPIKCADDGDKELKLKAW--------ALAKDT---RKFYRLTSK--TVQNQGL 105

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
           S +           +G+I      +G                    +  +    +   + 
Sbjct: 106 SPQEFQD------ADGVI----KFAGEAYAYLDLAGID--------YIDINPASM---VA 144

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-MAVAHSTVVSQKDRP 246
            H   +          A     P+V T+ +   S +  +      +  +        +  
Sbjct: 145 AHGAMET---------ARAFGKPVVITSYNDMPSIDHADFASAWKVRESVGLRHIATEEE 195

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
             T   ++  R E     ++     E   ++    + ++ +                   
Sbjct: 196 LWTRLRHIMTREEFDKAIANTHAVAEQLADVQLAKAPMIHL------------------- 236

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            + ++   A  G   RL++G I      Q Y  R   E+  I    F  YFL+VAD + +
Sbjct: 237 -DGDIVALAREGQAYRLSRGHIK--EWTQIYEDRFQEEIKQIQLKDFDSYFLVVADLVAF 293

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDR 426
           AKK ++ VGP RGS AGS+  Y L IT++DPL   LLF+RF++  R  +PD DIDF    
Sbjct: 294 AKK-HMLVGPARGSSAGSLVCYLLGITEVDPLPHRLLFQRFIDISRSDLPDIDIDFADTH 352

Query: 427 RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL-IPNDPAH 485
           R  V  Y+Q KYG   V ++    +L+A + +  VG+   +P+   D +    I    A 
Sbjct: 353 RYLVFEYLQQKYGTWNVVKLGNINTLKAASVIAHVGKRFGIPFHDTDNIKNSIIEYTSAD 412

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEG-LYRHASTHAAGIVIGDRPLSQLVP 544
               + + D     +          +             H+  HAAGI++ +  +     
Sbjct: 413 ERYGKGLEDTFEKTQPGRDFREKYEVASACMGDLEIHPSHSGVHAAGILVCNDEVIDFCT 472

Query: 545 MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
           +  +      + Q +    E   L+K D LGL+TL ++Q +    AQ      L  +P +
Sbjct: 473 VTSEG-----IAQLDKPDSEYLNLLKIDALGLRTLGVIQDANCVTAQE-----LYDLPLN 522

Query: 605 DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYN 662
           D     +L      GIFQ E   +R     +     E+I  + +L RPGP+ + +   Y 
Sbjct: 523 DKAVLDVLNEDKMSGIFQFEGQAVRSVANAINITAFENIDHITALARPGPLSSGMATKYI 582

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG-KKI 721
            R  G+E +    P ++  L  T GV +YQEQ+M I + +  +   +   +R+AM  +K 
Sbjct: 583 ERVAGREPVTYTIPQVEQYLSGTYGVFLYQEQIMSIVKDIGQFDWEQTSAIRKAMSARKG 642

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
           +E  +K++E FI GA   G++   A  +++ +  F  +GFN+SH+ +YAV++Y T +MK 
Sbjct: 643 EEFFNKRRELFIEGAKTIGVAPEDAHRVWQEMVTFGAWGFNRSHSVSYAVVTYWTCYMKR 702

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAA 841
           ++ +E+ AA +    D+ + +    ++  +  ++          +++ V D R+   +  
Sbjct: 703 YHRLEYAAACLRAAKDDQQTVSIL-RELAKEGVEYTALDPEHSELNWVVADGRLIGGIMN 761

Query: 842 IKGVGTTTARHIMEASAD 859
            KG G   A   +    +
Sbjct: 762 AKGFGPAKAERFLRLREE 779


>gi|118443832|ref|YP_878213.1| DNA polymerase III PolC [Clostridium novyi NT]
 gi|118134288|gb|ABK61332.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            novyi NT]
          Length = 1444

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 160/927 (17%), Positives = 305/927 (32%), Gaps = 192/927 (20%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPT--VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            +++I   D+L     G           +++L     G + L +L+S   L D   +  R+
Sbjct: 595  EMNITYLDDLNNKFLGNIDVKKLPTYHLIILAKNQVGLKNLYKLISFSNL-DYFYKKPRM 653

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--- 188
              S +++   EGLI+ +   +G + +A     S    K ++ F        Y+ +Q    
Sbjct: 654  PKSLIEQY-KEGLIIGSACEAGEVYKAVLEGKSNEDLKEIIKFYD------YLEIQPIMN 706

Query: 189  -----------HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
                       ++   +    ++ +L   + +P+VAT +  FL  +D +  ++LMA    
Sbjct: 707  NEFMLRKGIVKNQDQLKEINRKIYELGINNNMPVVATGDVHFLDPKDGKFREILMAGQ-- 764

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                     +        N       +     A E  +   ++ +  ++   PI      
Sbjct: 765  --GFSDAENQPPLYLKTTNEMLKEFEYLGEDIAKEVVINNPQKIANAVEFVKPIPDETFP 822

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + D      E ++RN  +          +I      +    RL+ ELN I    ++  +
Sbjct: 823  PKIDG----AEEDIRNMTLEKAY------SIYGNPLPKVVHDRLEKELNSIINNGYAVLY 872

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    +  + ++   VG  RGS   S+ A    IT+++ L                   
Sbjct: 873  LIAHKLVAKSLEDGYLVG-SRGSVGSSLVATMSDITEVNGLPPHYVCPNCKNSEFFTDGS 931

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL  +    PD D++F  D + ++ +Y + 
Sbjct: 932  VSSGADLPPKKCPKCGADYNRDGHDIPFETFLGFNGDKEPDIDLNFSGDNQGDIHKYTEV 991

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G     +  T G++  K A   V + L                +    VS   I    
Sbjct: 992  LFGKGHTFKAGTIGTIADKTAYGFVKKYLD---------------EKNMVVSQAEIER-- 1034

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS--- 551
                             ++Q   G+ R +  H  GI  V  D  +    P+         
Sbjct: 1035 -----------------LTQGCTGVKRTSGQHPGGIMVVPSDNEIYNFCPIQHPADDANS 1077

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET--- 608
            D+  T F+   I    L+K D LG    T+L+   D      +K+ +         T   
Sbjct: 1078 DIITTHFDYHSI-SGRLLKLDILGHDDPTVLRMLKDITGLDPIKIPIGDEKVLSLFTSPE 1136

Query: 609  ------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
                    L    G  GI +  +  +RQ L   +P    D++ +  L          V+ 
Sbjct: 1137 ALGVTAEELECPVGCYGIPEFGTKFVRQMLVDTKPKTFSDLVRISGLSH-----GTDVWL 1191

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            N      K       +   +     +++Y         L  G    +A  +   + K   
Sbjct: 1192 NNAQYFIKEGYT--TLKDCIATRDDIMVYL--------LHKGLPPKDAFTIMEKVRKGKG 1241

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
               +       +   ++ +      +  ++      Y F K HA AY +++ + A+ K +
Sbjct: 1242 LSEE-----HEALMREHKVPDWYIESCKKI-----KYMFPKGHAVAYVMMAVRIAYYKVY 1291

Query: 783  YPVEFLAASMTLE-----------------MDNVEKIKKFCQ-----------------D 808
            YP  + A   T+                     +++I                      +
Sbjct: 1292 YPEAYYATYFTVRGIDDFDADLIVKGEEVIKRKMDEINALGNSATQKDKGLLTNLELAFE 1351

Query: 809  ARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
              + NI+ +   +       F +  N I   + ++ GVG   A+ I +A     F S ED
Sbjct: 1352 MYKRNIKFLKVDIYKSHPTKFLIEGNYIRLPIGSLSGVGLNAAKSIADAREGGEFISKED 1411

Query: 868  FCSRVDSKKLNRRVLESLVFAGALDCF 894
               R    K+++ V+E+L   G L+  
Sbjct: 1412 LRKR---SKVSKTVIEALSEHGCLEGL 1435



 Score = 97.9 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 35/86 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++G  S  +++++ A    PA+AITD   + +  E    A    I+ I 
Sbjct: 346 VELHMHTQMSAMDGLSSATSLIERAAKWGHPAVAITDHGVVQAFPEAMDAAKKFNIKVIY 405

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +        TN          
Sbjct: 406 GVEAYLVNDGVPIATNVKNQNIDDTF 431


>gi|254413650|ref|ZP_05027420.1| OB-fold nucleic acid binding domain protein [Microcoleus
            chthonoplastes PCC 7420]
 gi|196179757|gb|EDX74751.1| OB-fold nucleic acid binding domain protein [Microcoleus
            chthonoplastes PCC 7420]
          Length = 386

 Score =  231 bits (588), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 113/259 (43%), Gaps = 13/259 (5%)

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGT 847
            + A +T    N +K++K+        I ++ P +N   VDF     +I +  +AI+ +G 
Sbjct: 1    MTALLTASSGNQDKVQKYIATCTTMGIDVLQPDINRSHVDFTPVSGKILFGFSAIRNLGE 60

Query: 848  TTARHIM-EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
                 I+ +   D  F SL DFC RV+ + +NRR LESL+++GA D    +R QL+  LD
Sbjct: 61   GAIETILHQREKDGDFQSLADFCDRVELRVVNRRALESLIYSGAFDRLESNRKQLINDLD 120

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFS----------DKITLEKFSVENSSVRFENEQ 956
             +  + Q   K+R +   NIF   +   +                K    ++  +   E+
Sbjct: 121  VLISWGQDRAKDRQSGQINIFDVLEDADTNNSERNNAWKAAPKTPKVEDFSAQEKLLQEK 180

Query: 957  RVLGFYFSGHPLDVYKPILRK-MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR-KGSR 1014
             +LGFY S HPL   +P   + +      E     +   +    M+   +   T+  G R
Sbjct: 181  ELLGFYVSDHPLKSVRPFANQVLTPINLNELADQNKRTILSAIVMLTEVKFHVTKTSGDR 240

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + +V   +   + +   FP
Sbjct: 241  MAFVQMEDLTGQADGVIFP 259


>gi|330685683|gb|EGG97324.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            epidermidis VCU121]
          Length = 1438

 Score =  230 bits (587), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 161/944 (17%), Positives = 309/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+           +  N K++N+          + L+V   +G + L ++
Sbjct: 579  IKMVQQMKELGV--------TNHIDINQKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKI 630

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 631  VSES-LVTYYYRTPRIPRSLLNEY-REGLLVGTACDEGELFTAVMQRDQSEVEKIAKYYD 688

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          ++++   +  +P++AT N+ +L E D  A 
Sbjct: 689  FIEVQPPALYQDLIDRELIRDTETLHEIYHRLIEAGKSANIPVIATGNAHYLYEHDAIAR 748

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V      +  ++  
Sbjct: 749  KILIASQPGNPL--NRSTLPEAHFRTTDEMLDELHFLGEEKAYELVVTNTNALADRIERV 806

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI  +      D        E+R  + +  +    +         Q    RL+ EL+ I
Sbjct: 807  VPIKDKLYTPRMDG----ANEEIRELSYSNAKKLYGEDL------PQIVIDRLEKELDSI 856

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                FS  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 857  IGNGFSVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCTHCK 915

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 916  TSEFFDDGSVGSGFDLPDKKCPECGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 975

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 976  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGFV-KGYLNDQGIHKRGAE---------- 1024

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1025 -----------------------VDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1061

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1062 QYPADDQSSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1118

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1119 KETMKIFSSPESLGVTEEDILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1178

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I +    +  ++     +++Y         + +G   S A 
Sbjct: 1179 G-------TDVWLGNAQELIRAGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1223

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
                 + K      +           +N +      +  ++      Y F K+HAAAY +
Sbjct: 1224 KTMEFVRKGRGLTDEMV-----EAMKENDVPDWYLDSCRKI-----KYMFPKAHAAAYVL 1273

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + A+  T+   + + I                             
Sbjct: 1274 MAVRIAYFKVHHPLYYYASYFTVRASDFDLITMIKDKTGIKNTVKDMYSRYMDLGKKEKD 1333

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      DF + D+ +     A+ G+G   A+ I+EA 
Sbjct: 1334 VLTVLEIMNEMAHRGYRMQPISLEKSQAFDFIIEDDSLIPPFIAVPGLGENVAKRIVEAR 1393

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             + PF S ED   +     L+++V+E L   G+L      + QL
Sbjct: 1394 EEGPFLSKEDLNKKA---GLSQKVIEYLDDLGSLPGL-PDKAQL 1433



 Score = 85.2 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 61/178 (34%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G  ++   + + A     AIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTSMSQMDGIPNIGGYVAQAAEWGHQAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 396 GMEGMLVDDGVPIAYKPTDRDLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 453

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E  L  FK+  GD ++V 
Sbjct: 454 DKFERFSNPHEKLSETIINLTHITDDMLTDA------PEIEDVLTDFKEWVGDAIFVA 505


>gi|150018035|ref|YP_001310289.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB
            8052]
 gi|149904500|gb|ABR35333.1| DNA polymerase III, alpha subunit [Clostridium beijerinckii NCIMB
            8052]
          Length = 1446

 Score =  230 bits (586), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 150/918 (16%), Positives = 293/918 (31%), Gaps = 176/918 (19%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            DID+    +   +           ++L     G + L +LVS  +L D   +  RI  S 
Sbjct: 595  DIDLYAADEEAKKVAYKKVKTHHAIILAKNYVGLKNLYKLVSYSHL-DYFYKKPRILKSM 653

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-- 193
             ++  +EGLI+ +  S G + +A      +   + +  F        Y+ +Q     D  
Sbjct: 654  FKKY-SEGLIIGSACSEGELYQAILLGKPEEQIEEIANFYD------YLEIQPLGNNDYL 706

Query: 194  ------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
                        +    ++V+LA     P+VAT +  FL  ED E +  ++        +
Sbjct: 707  VRQEQVPSKEYLKEINKKIVELAERLGKPVVATGDVHFLDPED-EIYRRILEAGQGFKDA 765

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                P                      +A E  V      + + +  +PI P       +
Sbjct: 766  DNQAPLYLRTTEEMLDEFSYLGR---TKAYEVVVTNTNIVADMCEQISPISPEKCPPHIE 822

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              ++  ++    KA            +      +  + RLD EL+ I +  FS  ++I  
Sbjct: 823  GCEQTIKDIAYEKAHE----------LYGDPLPEIVQARLDKELDSIIKNGFSVMYIIAQ 872

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------- 399
              +  + ++   VG  RGS   S  A    IT+++ L                       
Sbjct: 873  KLVWKSNEDGYLVG-SRGSVGSSFVANMTGITEVNALPPHYRCPKCKYSDFEDYGVLNGF 931

Query: 400  ------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
                                + FE FL  +    PD D++F  + + +  RY +  +G  
Sbjct: 932  DLPDKVCPVCGENLYKDGIDIPFETFLGFNGDKEPDIDLNFSGEYQAKAHRYTEVIFGKG 991

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
               +  T G++  K A   V +  +     +++   +  +                    
Sbjct: 992  TTFKAGTIGTIAEKTAFGYVKKYYEEKNITINKAETIRISV------------------- 1032

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYR---DVRSDLPVT 556
                              G+ R    H  GI++    R + +  P+     D  SD+  T
Sbjct: 1033 ---------------GCTGIKRTTGQHPGGIIVVPKGREIFEFCPVQHPADDPNSDIITT 1077

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             F+   I+       + L L  L     ++  + Q    VD   IP DD +T  L  +  
Sbjct: 1078 HFDYHSID------QNLLKLDILGHDDPTVIRMLQDITGVDPHEIPMDDKDTMSLFFSTK 1131

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR--KNGKEKIVSI 674
                  +  + +   +                L    P     +       +G +  +  
Sbjct: 1132 ---ALGVTPNQINSEVGTFGIPEFGTKFVRGMLVDTKPKTFSDLLCISGLSHGTDVWLGN 1188

Query: 675  HPLIDPMLKETQ--GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
               +      T     +  ++ +M       G   + A  +   + K  K   + +   +
Sbjct: 1189 AKDLIDNGVITSISDAVCTRDDIMVYLIR-KGLPPNTAFKIMETVRKG-KALKEPKFPEY 1246

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
             +   ++ + +    +  ++      Y F K+HAAAY +++++ AW K H P  + A   
Sbjct: 1247 EAMMREHDVPEWYIESCKKI-----KYMFPKAHAAAYVMMAFRIAWFKVHIPQAYYATYF 1301

Query: 793  TLEMDNVEKIKKFCQ---------------------------------DARQFNIQIMPP 819
            T+     +                                        +  +   + +P 
Sbjct: 1302 TIRAKAFDAEFMIFGKEKVKAKMQEIQALGNEAGPKDKDMYDDLEIVLEMYERGFKFLPI 1361

Query: 820  SVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
             +       F++ ++ I   L +I G+G   A  I  A+ +K F+S++D   R    K+ 
Sbjct: 1362 DLYKSSATKFQLEEDGIRPPLNSIAGMGNVAAEGIASAAKEKEFNSVDDVKKR---SKIG 1418

Query: 879  RRVLESLVFAGALDCFGY 896
               +E L      DC   
Sbjct: 1419 NAAIELLRK---FDCLNG 1433



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 39/91 (42%), Gaps = 2/91 (2%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-CAA-GIQP 69
           V L +H+  S ++   S ++++ +  +    +IAITD   + S  E  +        ++ 
Sbjct: 336 VELHMHTQMSQMDAMSSASDLIKRAMSWGMKSIAITDHGVVQSFPEAHKLLGRDNPDMKV 395

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           I G +  +       +TN  +    TV  ++
Sbjct: 396 IYGVEAYLAPDKKPSVTNVREESIDTVYCVL 426


>gi|319645959|ref|ZP_08000189.1| PolC protein [Bacillus sp. BT1B_CT2]
 gi|317391709|gb|EFV72506.1| PolC protein [Bacillus sp. BT1B_CT2]
          Length = 1463

 Score =  230 bits (586), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 149/913 (16%), Positives = 282/913 (30%), Gaps = 178/913 (19%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             ++  + A    I       L    Q N  M               LL     G + L +
Sbjct: 579  LVKMLKDAAEKNI-------LY-HDQLNENMGQSNAYQRSRPYHATLLAVNETGLKNLFK 630

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 631  LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDKGEVFEGMMQKSPEEVEDIASFY 688

Query: 175  K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
               ++    +Y     + L R     +   + + +L     +P+VAT N  +L+ ED   
Sbjct: 689  DYLEVMPPEVYRHLLQLELVRDEKALKEIIANITKLGEKLNIPVVATGNVHYLNPEDKIY 748

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
              +L++                      +       F    +A E  V+  R  S  ++ 
Sbjct: 749  RKILVSSQGGA-NPLNRHELPNVHFRSTDEMLEAFSFLGEEKAKEIVVKNTRMISERIEE 807

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              PI       + +      ++E+R  +         +         +   +R++ EL  
Sbjct: 808  IKPIKDDLYTPKIEG----ADDEIRRMSYEKARSIYGEDL------PEIVEKRIEKELKS 857

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------- 399
            I    F+  +LI    ++ +  +   VG  RGS   S+ A    IT+++PL         
Sbjct: 858  IIGHGFAVIYLISHKLVKRSLDDGYLVG-SRGSVGSSLVATLTEITEVNPLPPHYVCPDC 916

Query: 400  ---------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDR 426
                                               + FE FL      +PD D++F  + 
Sbjct: 917  RHSEFFNDGSVGSGFDLPDKDCPKCGAAYRKDGHDIPFETFLGFKGDKVPDIDLNFSGEY 976

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            +     Y +  +G + V +  T G++  K A   V                         
Sbjct: 977  QPHAHNYTKVLFGEDNVYRAGTIGTVAEKTAYGYVKGYANDN------------------ 1018

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVP 544
                                    +  + Q   G+ R    H  GI  V     +    P
Sbjct: 1019 ----------------NLHMRGAEIDRLVQGCTGVKRTTGQHPGGIIVVPDYMDIYDFSP 1062

Query: 545  MYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRG 593
            +        S+   T F+   I    L+K D LG    T+++   D              
Sbjct: 1063 IQFPADATDSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDP 1121

Query: 594  VKVDLSLIPFDDHETYHLL-TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
              + +         T   +    GTLGI +  +  +RQ LE  +P    +++ +  L   
Sbjct: 1122 EVMKIFQGTESLGVTEEQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHG 1181

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                         N +E I +    +  ++     +++Y         +  G   S A  
Sbjct: 1182 -------TDVWLGNAQELIHNNICELSEVIGCRDDIMVYL--------IYQGLEPSLAFK 1226

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K      +     +      N +      +  ++      Y F K+HAAAY ++
Sbjct: 1227 IMEFVRKGKGLTPE-----WEEEMKNNNVPDWYIDSCKKI-----KYMFPKAHAAAYVLM 1276

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ------------------------- 807
            + + A+ K H+P+ + AA  T+  D+ +                                
Sbjct: 1277 AVRIAYFKVHHPLLYYAAYFTVRADDFDIETMIKGSTAIRAVMDDINSKGLDASPKEKSL 1336

Query: 808  --------DARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                    +  +         +      +F +  N +     +I G+GT  A +I++A  
Sbjct: 1337 LTVLELALEMCERGFSFQKVDLYRSSASEFIIDGNSLIPPFNSIPGLGTNAALNIVKARE 1396

Query: 859  DKPFDSLEDFCSR 871
            +  F S ED   +
Sbjct: 1397 EGEFLSKEDLQKK 1409



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++   S+  ++++      PAIA+TD   + S  +    +   G++ I 
Sbjct: 336 VELHLHSPMSQMDAVSSIGKLVEQAKKWGHPAIALTDHAVVQSFPDAFAASKKHGVKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           +V 
Sbjct: 396 GLEANLVDDGVPIAYNPVHRLLEEETYVVF 425


>gi|239636258|ref|ZP_04677260.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            warneri L37603]
 gi|239597613|gb|EEQ80108.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            warneri L37603]
          Length = 1438

 Score =  230 bits (586), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 160/944 (16%), Positives = 308/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+           +  N K++N+          + L+V   +G + L ++
Sbjct: 579  IKMVQQMKELGV--------TNHIDINQKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKI 630

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 631  VSES-LVTYYYRTPRIPRSLLNEY-REGLLVGTACDEGELFTAVMQRDQSEVEKIAKYYD 688

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          ++++   +  +P++AT N+ +L E D  A 
Sbjct: 689  FIEVQPPALYQDLIDRELIRDTETLHEIYHRLIEAGKSANIPVIATGNAHYLYEHDAIAR 748

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V      +  ++  
Sbjct: 749  KILIASQPGNPL--NRSTLPEAHFRTTDEMLDELHFLGEEKAYELVVTNTNALADQIERV 806

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI  +      D        E+R  + +  +    +         Q    RL+ EL+ I
Sbjct: 807  VPIKDKLYTPRMDG----ANEEIRELSYSNAKKLYGEDL------PQIVIDRLEKELDSI 856

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                FS  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 857  IGNGFSVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICTHCK 915

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 916  TSEFFDDGSVGSGFDLPDKKCPECGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 975

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 976  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGFV-KGYLNDQGIHKRGAE---------- 1024

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1025 -----------------------VDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1061

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1062 QYPADDQSSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1118

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1119 KETMKIFSSPESLGVTEEDILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1178

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I +    +  ++     +++Y         + +G   S A 
Sbjct: 1179 G-------TDVWLGNAQELIRAGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1223

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
                 + K      +           +N +      +  ++      Y F K+HAAAY +
Sbjct: 1224 KTMEFVRKGRGLTDEMV-----EAMKENDVPDWYLDSCRKI-----KYMFPKAHAAAYVL 1273

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + A+  T+   + + I                             
Sbjct: 1274 MAVRIAYFKVHHPLYYYASYFTVRASDFDLITMIKDKTGIKNTVKDMYSRYMDLGKKEKD 1333

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      DF +  + +     A+ G+G   A+ I+EA 
Sbjct: 1334 VLTVLEIMNEMAHRGYRMQPISLEKSQAFDFIIEGDTLIPPFIAVPGLGENVAKRIVEAR 1393

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             + PF S ED   +     L+++V+E L   G+L      + QL
Sbjct: 1394 EEGPFLSKEDLNKKA---GLSQKVIEYLDDLGSLPGL-PDKAQL 1433



 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 61/178 (34%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G  ++   + + A     AIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTSMSQMDGIPNIGGYVAQAAEWGHQAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 396 GMEGMLVDDGVPIAYKPTDRDLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 453

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E  L  FK+  GD ++V 
Sbjct: 454 DKFERFSNPHEKLSETIINLTHITDDMLTDA------PEIEDVLTEFKEWVGDAIFVA 505


>gi|329724322|gb|EGG60834.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            epidermidis VCU144]
          Length = 1438

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 161/944 (17%), Positives = 308/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+        +  ++ N K+TN+          + L+V   EG + L ++
Sbjct: 579  IKMVQQMKELGV--------NNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKI 630

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 631  VSAS-LVKYYYRTPRIPRSLLNEY-REGLLIGTACDEGELFTAVMQKDQSEVEKIAKFYD 688

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    +  +P++AT N+ +L E D  A 
Sbjct: 689  FIEVQPPALYQDLMDRELIRDNETLTQIYKRLIDAGKSANIPVIATGNAHYLYEHDAIAR 748

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V      +  ++  
Sbjct: 749  KILIASQPGNPL--NRSTLPEAHFRTTDEMLDDFHFLGEEKAYEIVVTNTNELANKIEKV 806

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI  +      D        E+R  + +  +    +         Q    RL+ EL+ I
Sbjct: 807  VPIKDKLFTPRMDG----ANEEIRELSYSNAKKLYGEDL------PQIVIDRLEKELDSI 856

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                FS  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 857  IGNGFSVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCK 915

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 916  TSEFFDDGSVGSGFDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 975

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 976  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGFV-KGYLNDQGIHKRGAE---------- 1024

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1025 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1061

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1062 QFPADDQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1118

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1119 KETMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1178

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I      +  ++     +++Y         + +G   S A 
Sbjct: 1179 G-------TDVWLGNAQELIRQGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1223

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
                 + K      +           +N +      +  ++      Y F K+HAAAY +
Sbjct: 1224 KTMEFVRKGRGLTDEMV-----EAMKENNVPDWYLDSCRKI-----KYMFPKAHAAAYVL 1273

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + AA  T+   + + I                             
Sbjct: 1274 MAVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1333

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      DF +  + +     ++ G+G   A+ I+EA 
Sbjct: 1334 VLTVLEIMNEMAHRGFRLQPISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAQRIVEAR 1393

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             + PF S ED   +     L+++V++ L   G+L      + QL
Sbjct: 1394 EEGPFLSKEDLNKKA---GLSQKVIDYLDELGSLPDL-PDKAQL 1433



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G  +++  +++ A     A+A+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTSMSQMDGIPNISAYVEQAAKWGHQALAVTDHNVVQAFPDAHNAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 396 GMEGMLVDDGVPIAYKPTDRNLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 453

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 454 DKFERFSNPHERLSETIINLTHITDDMLTDA------PEIEEVLTEFKEWVGDAIFVA 505


>gi|297584076|ref|YP_003699856.1| DNA polymerase III subunit alpha [Bacillus selenitireducens MLS10]
 gi|297142533|gb|ADH99290.1| DNA polymerase III, alpha subunit [Bacillus selenitireducens MLS10]
          Length = 1433

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 166/912 (18%), Positives = 298/912 (32%), Gaps = 183/912 (20%)

Query: 84   KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEG 143
              ++             +    AEG + L +LVS+ ++ D   +  R+  S L E   EG
Sbjct: 595  DQSSPDDYKKQRPNHCTIYAKNAEGLKNLYKLVSKAHI-DYFFRVPRLPKSVLVE-HREG 652

Query: 144  LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY---VN--LQRHRGYDRYR 196
            L++ +    G +       + +  E     +   ++     Y   +   + R     +  
Sbjct: 653  LLIGSACDQGEVFDGLMQKAPEEVESTAAFYDFLEVMPPSNYQHLIEKEIIRDELELKSV 712

Query: 197  ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKN 256
               +++L  T   P+VAT N  +L+EED+    +L+A         +          +  
Sbjct: 713  IKNLIKLGETVNKPVVATGNVHYLNEEDHVYRKILIASQGGANPLNRI-----TLPKVHF 767

Query: 257  RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
            R+    +      + E   EI    S  +      +    +       +  + E+R    
Sbjct: 768  RTTNEMLDCFSFLSEEKRQEIVVTNSRKIADEIDEIKPIPDDLYTPHIEGADEEMRQMCY 827

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
               +              +   +RL+ EL  I    FS  +LI    ++ +  +   VG 
Sbjct: 828  DRAKSIYGDPL------PELVEKRLEKELTSIISNGFSVIYLISQKLVKKSLDDGYLVG- 880

Query: 377  GRGSGAGSVTAYALTITDIDPLR------------------------------------- 399
             RGS   S  A    IT+++PL                                      
Sbjct: 881  SRGSVGSSFVATMTEITEVNPLPPHYVCPSCQYSYFFNDGSVGSGFDLPDKDCEKCGTPY 940

Query: 400  ----FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  + FE FL      +PD D++F  + +     Y ++ +G + V +  T  ++  K
Sbjct: 941  EKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPVAHNYTKDLFGEDYVYRAGTITTVADK 1000

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V               K    D    +    I                     + 
Sbjct: 1001 TAYGYV---------------KGYEGDMGMQLKGAEIDR-------------------LV 1026

Query: 516  QKLEGLYRHASTHAAGIVIGDRPLS--QLVPMYRDVRSD---LPVTQFNMKWIEKAGLIK 570
                G+ R    H  GI++    L      P+      D      T F+   I       
Sbjct: 1027 SGCTGVKRSTGQHPGGIIVVPDHLDIYDFSPIQFPADDDGSEWKTTHFDFHSIHD----- 1081

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL--------------LTTKG 616
             + L L  L     ++  + Q    +D   IP DD E + L              +   G
Sbjct: 1082 -NLLKLDILGHDDPTVIRMLQDLSGMDPKDIPVDDPEVFKLFSGTESLGVKEEDIMCKTG 1140

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            T GI +  +  +RQ LE  +P    +++ +  L                N  + I +   
Sbjct: 1141 TFGIPEFGTRFVRQMLEETKPSTFSELVQISGLSHGS-------DVWLNNAADLIAAGTC 1193

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
             +  ++     +++Y         +  G   S A  +   + K    + +     +I   
Sbjct: 1194 ELKDVIGCRDDIMVYL--------IYQGLEHSLAFKIMEFVRKGKGLDPE-----WIEEM 1240

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
             KNG+      +  ++      Y F K+HAAAY +++ + A+ K H+P+ F AA  T+  
Sbjct: 1241 KKNGVPDWYIQSCLKI-----KYMFPKAHAAAYVLMAIRIAYFKVHHPMMFYAAYFTVRA 1295

Query: 797  DNVE---------KIKKFCQDARQFNIQIMPPS-------------------------VN 822
            D+ E          I+K  ++     +   P                             
Sbjct: 1296 DDFELDTMIRGSATIRKRIEEIYSKGLDATPKEKSVLTVLELALEMTMRGFSFKKVDLYR 1355

Query: 823  TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
            +   +F+V +N +     A+ GVGT  A  I+EA  D  F S E+   R    K+ + VL
Sbjct: 1356 SKASEFQVEENALLPPFDALTGVGTNAALSIVEARKDGEFLSKENLRER---SKITKTVL 1412

Query: 883  ESLVFAGALDCF 894
            E+L   G LD  
Sbjct: 1413 ENLDDHGCLDGM 1424



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 6/93 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA---LEFSQKACAAGIQ 68
           V L +HS+ S ++   ++   +++       AIAITD      A    E        GI+
Sbjct: 333 VELHMHSTMSQMDAVTNVGRYVEQAKKWGHHAIAITDH---AGAQAFPEAYSAGKKNGIK 389

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
            I G + ++         +           +V 
Sbjct: 390 IIYGVEANLVDDGVPIAYHPSDRDLMEDTYVVF 422


>gi|126011012|ref|YP_001039762.1| hypothetical protein BcepF1.078 [Burkholderia ambifaria phage
           BcepF1]
 gi|119712588|gb|ABL96809.1| unknown [Burkholderia ambifaria phage BcepF1]
          Length = 956

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 191/834 (22%), Positives = 348/834 (41%), Gaps = 83/834 (9%)

Query: 14  LQVHSSYSL--LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           L+V + YS     G   L++I+ ++     P   I D  + +  + F +      I P  
Sbjct: 6   LRVRTGYSFKKCYG--HLDDIVARLGEVAAPFAGIVD-ASTWGHVRFDKAIRKTEITPGF 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G ++ I    +++            P   +L       +R+    +              
Sbjct: 63  GAEIPIIGTGDME---------GFSPRAWILAKDT---RRMYNASTAAAQKGA------- 103

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
            LS  +     G+I   GG+      A   + S  A+   + +  +     ++       
Sbjct: 104 -LSAFEFGALSGVIRFAGGAL----DAVLADHSSQADHAPIDYIDVNP--AFL------- 149

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSE-EDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                 ++ V+      +PLV T+ +      + + A+   +  +        +    + 
Sbjct: 150 ---VHAARAVRWHRRSGIPLVLTSYNDMPRASDAHFAYATEVRDSVGMRHIATEDEMWSQ 206

Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             ++  R E V+   +  +   +   +A + + I+ +   +L                  
Sbjct: 207 LQHVMTRLEFVTAIENTHDVAADLKGVALQKAPIISLEGDMLAWC--------------- 251

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
                  G   RLA+G I       +Y  RL  E   I    F  YFL VAD +++AK+ 
Sbjct: 252 -----REGQAERLAKGHIK--EWTNEYESRLLMECEQIRSKNFDSYFLCVADLVRFAKR- 303

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
           ++ VGP RGS AGS+  Y + IT++DPL + LLF+RF++  R   PD DIDF  ++R+ V
Sbjct: 304 HMLVGPARGSSAGSLVCYLMGITEVDPLPYGLLFQRFIDVSRSDFPDIDIDFNDEKREMV 363

Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
             Y+++KYG   VA++    +L+A + +  V +   + Y + D +   + +  A      
Sbjct: 364 FDYLRDKYGDASVARVGNVSTLKAASVIGMVSKKFGIGYIENDYIKNSLLSY-AKGDDRY 422

Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEG---LYRHASTHAAGIVIGDRPLSQLVPMYR 547
               +  F++              ++ +        H S HAAGI++ + P+S    +  
Sbjct: 423 GYELEDTFKQTEPGQDYAATHPGAARMMAEVEIHPSHTSVHAAGILVCNDPVSDFCTVEA 482

Query: 548 DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
           +      V   +    E   L+K D LGL+TL +++ +           +L  +   D  
Sbjct: 483 NG-----VASLDKDDAESLNLLKIDALGLRTLGIIESANVMT-----PDELYALTPTDQR 532

Query: 608 TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV--VYNNRK 665
            + +L     L IFQ E + +RQ  + +  D    I  + SL RPGP+   +   Y  R 
Sbjct: 533 VFDVLNEGKVLAIFQFEGNAVRQVTKRVHIDRFSKIDNITSLARPGPLGAGMDEPYIKRT 592

Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEE 724
            GKE +    P +   L +T G+++YQEQ+M I + + G+       +R+AMGK    E 
Sbjct: 593 AGKEAVTFAFPELRKYLGDTFGILLYQEQIMAIVREIGGFDWPRVTEIRKAMGKSKGAEY 652

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            DK  + F+ GA + GI+   A  +++ +  F  YGFNKSH+ AY++++Y T  +K  + 
Sbjct: 653 FDKHGDDFVKGAVERGINAEAARKLWKEMVTFGAYGFNKSHSVAYSLVTYWTLHLKRFHR 712

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS 838
           +EF AA +    D  + I    ++  Q  +Q           +++V + R+   
Sbjct: 713 LEFAAACLRSAKDEQQTIAIL-RELVQEGVQYTALDPEYSTDNWRVANGRLVGG 765


>gi|188589600|ref|YP_001920613.1| DNA polymerase III PolC [Clostridium botulinum E3 str. Alaska E43]
 gi|188499881|gb|ACD53017.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum E3 str. Alaska E43]
          Length = 1452

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 158/910 (17%), Positives = 289/910 (31%), Gaps = 187/910 (20%)

Query: 90   KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG 149
                     I++L  T  G + L +L+S+ ++ D   +  R   + L E   EGLI+ + 
Sbjct: 622  DIRKQPTYHIIILAKTQAGLKNLYKLISKSHI-DNFFRRPRTPKTLLSEF-REGLIIGSA 679

Query: 150  GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--------------HRGYDRY 195
              +G + +A     S    K ++ F        YV +Q                    R 
Sbjct: 680  CEAGEVYKAVLEGRSDDEIKEIIEFYD------YVEIQPIANNNFLIAKGSVKDEEELRE 733

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
               ++ +L      P VAT +  FL+  D     ++MA             +        
Sbjct: 734  INRKIYRLGKECNKPTVATGDVHFLNPNDEAFRKIIMAGQ----GFSDADNQPPLYLKTT 789

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
                    +     A E  ++  ++ S  + V  PI       + +  +++ +N   NKA
Sbjct: 790  EEMLKEFSYLGKDIAKEVVIDNPKKISDSIGVLKPIPDETYPPKIEGAEEDIKNMTLNKA 849

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
                       AI      +  ++RLD ELN I    ++  +LI    +  + ++   VG
Sbjct: 850  ----------HAIYGEVLPEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSTEDGYLVG 899

Query: 376  PGRGSGAGSVTAYALTITDID----------------------------PLRFSLLFE-- 405
              RGS   S  A    IT+++                            P +     +  
Sbjct: 900  -SRGSVGSSFVATMSDITEVNGLPPHYVCPKCKKSEFFLDGSISSGADLPDKNCPHCDVP 958

Query: 406  -----------RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                        FL  +    PD D++F  + +  V RY +  +G     +  T G++  
Sbjct: 959  YIKDGHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHRYTEVLFGKGHTFKAGTIGTIAE 1018

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V + L                                    R    S   +  +
Sbjct: 1019 KTAYGYVKKYLD----------------------------------EREIITSSAEIERL 1044

Query: 515  SQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIK 570
            +    G+ R    H  GI  V  D  +    P+      +    VT           L+K
Sbjct: 1045 TLGCTGIKRTTGQHPGGIMVVPADNEIYNFCPIQHPADDNDTDVVTTHFDYHSISGRLLK 1104

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIF 621
             D LG    T+L+   D        + L+        T           L    G+ G+ 
Sbjct: 1105 LDILGHDDPTVLRMLQDLTGLDPKTIPLNDEKVLSLFTSPEALGVTKEELECEVGSYGLP 1164

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            +  +  +R  L   QP    D++ +  L                N +  I      +   
Sbjct: 1165 EFGTKFVRGMLVDTQPKTFADLVRISGLSHG-------TDVWLNNAQYYIKEGFTTLRDC 1217

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            +     +++Y         +  G     A  +   + K      D +         ++ +
Sbjct: 1218 IATRDDIMVYL--------MYKGLPPKSAFTIMEKVRKGKGLSEDDE-----KLMKEHEV 1264

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE- 800
             +    +  ++      Y F K HA AY +++ + A+ K +YP  + A   T+  D+ + 
Sbjct: 1265 PEWYIGSCKKI-----KYMFPKGHAVAYVMMAVRIAYYKVYYPEAYYATYFTVRADDFDA 1319

Query: 801  --------------------------------KIKKFCQDARQFNIQIMPPSVNTPC-VD 827
                                             + + C +A +  ++ +   +     V 
Sbjct: 1320 NLVCLGDGAVHTKLQELYELGNNASVKDKGLITVLELCFEAYKRGVKFLRVDLYKSEGVK 1379

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            FK+ D  +   L ++ GV    A++I+EA     F S ED   R     +++ V+ESL  
Sbjct: 1380 FKIEDGALRLPLNSLPGVADNAAKNIVEARVKGEFISKEDLRIRA---GVSKTVIESLSN 1436

Query: 888  AGALDCFGYS 897
             G LD    +
Sbjct: 1437 HGCLDGLSET 1446



 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L +H++ S ++G  S + +++  A     AIAITD   + +  E    +    I+ + 
Sbjct: 354 IELHLHTNMSSMDGITSASKMIETAAKWGHEAIAITDHGVVQAYPEAQLASKKNKIKILY 413

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       + N+         
Sbjct: 414 GVEGYLVNNGVPLVVNEKGYTLDDTF 439


>gi|251779220|ref|ZP_04822140.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum E1 str. 'BoNT E Beluga']
 gi|243083535|gb|EES49425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum E1 str. 'BoNT E Beluga']
          Length = 1452

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 158/910 (17%), Positives = 289/910 (31%), Gaps = 187/910 (20%)

Query: 90   KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG 149
                     I++L  T  G + L +L+S+ ++ D   +  R   + L E   EGLI+ + 
Sbjct: 622  DIRKQPTYHIIILAKTQAGLKNLYKLISKSHI-DNFFRRPRTPKTLLSEF-REGLIIGSA 679

Query: 150  GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--------------HRGYDRY 195
              +G + +A     S    K ++ F        YV +Q                    R 
Sbjct: 680  CEAGEVYKAVLEGRSDDEIKEIIEFYD------YVEIQPIANNNFLIAKGSVKDEEELRE 733

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
               ++ +L      P VAT +  FL+  D     ++MA             +        
Sbjct: 734  INRKIYRLGKECNKPTVATGDVHFLNPNDEAFRKIIMAGQ----GFSDADNQPPLYLKTT 789

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
                    +     A E  ++  ++ S  + V  PI       + +  +++ +N   NKA
Sbjct: 790  EEMLKEFSYLGKDIAKEVVIDNPKKISDSIGVLKPIPDETYPPKIEGAEEDIKNMTLNKA 849

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
                       AI      +  ++RLD ELN I    ++  +LI    +  + ++   VG
Sbjct: 850  ----------HAIYGEVLPEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSTEDGYLVG 899

Query: 376  PGRGSGAGSVTAYALTITDID----------------------------PLRFSLLFE-- 405
              RGS   S  A    IT+++                            P +     +  
Sbjct: 900  -SRGSVGSSFVATMSDITEVNGLPPHYVCPKCKKSEFFLDGSISSGADLPNKNCPHCDVP 958

Query: 406  -----------RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                        FL  +    PD D++F  + +  V RY +  +G     +  T G++  
Sbjct: 959  YIKDGHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHRYTEVLFGKGHTFKAGTIGTIAE 1018

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V + L                                    R    S   +  +
Sbjct: 1019 KTAYGYVKKYLD----------------------------------EREIITSSAEIERL 1044

Query: 515  SQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIK 570
            +    G+ R    H  GI  V  D  +    P+      +    VT           L+K
Sbjct: 1045 TLGCTGIKRTTGQHPGGIMVVPADNEIYNFCPIQHPADDNDTDVVTTHFDYHSISGRLLK 1104

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIF 621
             D LG    T+L+   D        + L+        T           L    G+ G+ 
Sbjct: 1105 LDILGHDDPTVLRMLQDLTGLDPKTIPLNDEKVLSLFTSPEALGVTKEELECEVGSYGLP 1164

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            +  +  +R  L   QP    D++ +  L                N +  I      +   
Sbjct: 1165 EFGTKFVRGMLVDTQPKTFADLVRISGLSHG-------TDVWLNNAQYYIKEGFTTLRDC 1217

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            +     +++Y         +  G     A  +   + K      D +         ++ +
Sbjct: 1218 IATRDDIMVYL--------MYKGLPPKSAFTIMEKVRKGKGLSEDDE-----KLMKEHEV 1264

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE- 800
             +    +  ++      Y F K HA AY +++ + A+ K +YP  + A   T+  D+ + 
Sbjct: 1265 PEWYIGSCKKI-----KYMFPKGHAVAYVMMAVRIAYYKVYYPEAYYATYFTVRADDFDA 1319

Query: 801  --------------------------------KIKKFCQDARQFNIQIMPPSVNTPC-VD 827
                                             + + C +A +  ++ +   +     V 
Sbjct: 1320 NLVCLGDGAVHTKLQELYELGNNASVKDKGLITVLELCFEAYKRGVKFLRVDLYKSEGVK 1379

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            FK+ D  +   L ++ GV    A++I+EA     F S ED   R     +++ V+ESL  
Sbjct: 1380 FKIEDGALRLPLNSLPGVADNAAKNIVEARVKGEFISKEDLRIRA---GVSKTVIESLSN 1436

Query: 888  AGALDCFGYS 897
             G LD    +
Sbjct: 1437 HGCLDGLSET 1446



 Score = 81.0 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 35/86 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L +H++ S ++G  S + I++  A     AIAITD   + +  E    +    I+ + 
Sbjct: 354 IELHLHTNMSSMDGITSASKIIETAAKWGHEAIAITDHGVVQAYPEAQLASKKNKIKILY 413

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       + N+         
Sbjct: 414 GVEGYLVNNGVPLVVNEKGYTLDDTF 439


>gi|187935470|ref|YP_001885466.1| DNA polymerase III PolC [Clostridium botulinum B str. Eklund 17B]
 gi|187723623|gb|ACD24844.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum B str. Eklund 17B]
          Length = 1452

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 150/910 (16%), Positives = 283/910 (31%), Gaps = 187/910 (20%)

Query: 90   KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG 149
                     I++L  T  G + L +L+S+ ++ D   +  R   + L E   EGLI+ + 
Sbjct: 622  DIRKQPTYHIIILAKTQAGLKNLYKLISKSHI-DNFFRRPRTPKTLLSEF-REGLIIGSA 679

Query: 150  GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RY 195
              +G + +A     S    K ++ F        YV +Q     +              R 
Sbjct: 680  CEAGEVYKAVLEGRSDDEIKEIIEFYD------YVEIQPIDNNNFLIAKGSVKDEEELRD 733

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
               ++ +L      P VAT +  FL+  D EA   ++        +    P         
Sbjct: 734  INRKIYRLGKECNKPTVATGDVHFLNPND-EAFRKIIMAGQGFSDADNQPPLYLKTTEEM 792

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
             +              +   E+       +     +L    ++      +  E +++N  
Sbjct: 793  LKEFSYLGK-------DIAREVVIDNPKKISDSIGVLKPIPDETYPPKIEGAEEDIKNMT 845

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
            +        +         +  ++RLD ELN I    ++  +LI    +  + ++   VG
Sbjct: 846  LNKAHAIYGE------VLPEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSTEDGYLVG 899

Query: 376  PGRGSGAGSVTAYALTITDID----------------------------PLRFSLLFE-- 405
              RGS   S  A    IT+++                            P +     +  
Sbjct: 900  -SRGSVGSSFVATMSDITEVNGLPPHYVCPKCKKSEFFLDGSISSGADLPDKNCPDCDVP 958

Query: 406  -----------RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                        FL  +    PD D++F  + +  V RY +  +G     +  T G++  
Sbjct: 959  YIKDGHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHRYTEVLFGKGHTFKAGTIGTIAE 1018

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V + L                                    R    S   +  +
Sbjct: 1019 KTAYGYVKKYLD----------------------------------EREIITSSAEIERL 1044

Query: 515  SQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIK 570
            +    G+ R    H  GI  V  D  +    P+      +    VT           L+K
Sbjct: 1045 TLGCTGIKRTTGQHPGGIMVVPADNEIYNFCPIQHPADDNDTDVVTTHFDYHSISGRLLK 1104

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIF 621
             D LG    T+L+   D        + L+        T           L    G+ G+ 
Sbjct: 1105 LDILGHDDPTVLRMLQDLTGLDPKTIPLNDEKVLSLFTSPEALGVTKEELECEVGSYGLP 1164

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            +  +  +R  L   QP    D++ +  L                N +  I      +   
Sbjct: 1165 EFGTKFVRGMLVDTQPKTFADLVRISGLSHG-------TDVWLNNAQYYIKEGFTTLRDC 1217

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            +     +++Y         +  G     A  +   + K      D +         ++ +
Sbjct: 1218 IATRDDIMVYL--------MYKGLPPKSAFTIMEKVRKGKGLSEDDE-----KLMKEHEV 1264

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE- 800
             +    +  ++      Y F K HA AY +++ + A+ K +YP  + A   T+  D+ + 
Sbjct: 1265 PEWYIGSCKKI-----KYMFPKGHAVAYVMMAVRIAYYKVYYPEAYYATYFTVRADDFDA 1319

Query: 801  --------------------------------KIKKFCQDARQFNIQIMPPSVNTPC-VD 827
                                             + + C +A +  ++ +   +     + 
Sbjct: 1320 NLVCLGDGAVHTKLQELYELGNNASVKDKGLITVLELCFEAYKRGVKFLRVDLYKSEGIK 1379

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            FK+ D  +   L ++ GV    A+ I+EA     F S ED   R     +++ V+ESL  
Sbjct: 1380 FKIEDGALRLPLNSLPGVADNAAKSIVEARVKGEFISKEDLRIRA---GVSKTVIESLSN 1436

Query: 888  AGALDCFGYS 897
             G LD    +
Sbjct: 1437 HGCLDGLSET 1446



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 35/86 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L +H++ S ++G  S + +++  A     AIAITD   + +  E    +    I+ + 
Sbjct: 354 IELHLHTNMSSMDGITSASKLIETAAKWGHEAIAITDHGVVQAYPEAQLASKKNKIKILY 413

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       + N+         
Sbjct: 414 GVEGYLVNNGVPLVINEKGYTLDDTF 439


>gi|253733498|ref|ZP_04867663.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728552|gb|EES97281.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH130]
          Length = 1438

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 161/944 (17%), Positives = 310/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+       L+   + N K++N+          + L+V   +G + L ++
Sbjct: 579  IKMVQQMKELGV-------LN-HNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKI 630

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 631  VSAS-LVKYFYRTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKFYD 688

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    T  +P++AT N+ +L E D  A 
Sbjct: 689  FIEIQPPALYQDLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIAR 748

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V+     +  ++  
Sbjct: 749  KILIASQPGNPL--NRSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERV 806

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI         +        E+R  + A       +         Q    RL+ EL  I
Sbjct: 807  VPIKDELYTPRMEG----ANEEIRELSYANARKLYGEDL------PQIVIDRLEKELKSI 856

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 857  IGNGFAVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCK 915

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 916  TSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 975

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 976  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYV-KGYLNDQGIHKRGAE---------- 1024

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1025 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1061

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1062 QYPADDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1118

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1119 KEVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1178

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I S    +  ++     +++Y         + +G   S A 
Sbjct: 1179 G-------TDVWLGNAQELIKSGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1223

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +  ++ K      +      I    +N +      +  ++      Y F K+HAAAY +
Sbjct: 1224 KIMESVRKGKGLTEE-----MIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVL 1273

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + A+  T+   + + I                             
Sbjct: 1274 MAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1333

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA 
Sbjct: 1334 VLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEAR 1393

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1394 DDGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1433



 Score = 88.3 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 396 GMEGMLVDDGVPIAYKPQDVVLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 453

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 454 DKFERFSNPHERLSETIINLTHITDDMLVDA------PEIEEVLTEFKEWVGDAIFVA 505


>gi|57866746|ref|YP_188413.1| DNA polymerase III PolC [Staphylococcus epidermidis RP62A]
 gi|293366772|ref|ZP_06613448.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W2(grey)]
 gi|57637404|gb|AAW54192.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            epidermidis RP62A]
 gi|291319073|gb|EFE59443.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 1436

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 160/944 (16%), Positives = 308/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+        +  ++ N K+TN+          + L+V   EG + L ++
Sbjct: 577  IKMVQQMKELGV--------NNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKI 628

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EG+++ T    G +  A         EK    + 
Sbjct: 629  VSAS-LVKYYYRTPRIPRSLLNEY-REGILIGTACDEGELFTAVMQKDQSEVEKIAKFYD 686

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    +  +P++AT N+ +L E D  A 
Sbjct: 687  FIEVQPPALYQDLMDRELIRDNETLTQIYKRLIDAGKSANIPVIATGNAHYLYEHDAIAR 746

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V      +  ++  
Sbjct: 747  KILIASQPGNPL--NRSTLPEAHFRTTDEMLDDFHFLGEEKAYEIVVTNTNELANKIEKV 804

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI  +      D        E+R  + +  +    +         Q    RL+ EL+ I
Sbjct: 805  VPIKDKLFTPRMDG----ANEEIRELSYSNAKKLYGEDL------PQIVIDRLEKELDSI 854

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                FS  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 855  IGNGFSVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCK 913

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 914  TSEFFDDGSVGSGFDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 973

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 974  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGFV-KGYLNDQGIHKRGAE---------- 1022

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1023 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1059

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1060 QFPADDQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1116

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1117 KETMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1176

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I      +  ++     +++Y         + +G   S A 
Sbjct: 1177 G-------TDVWLGNAQELIRQGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1221

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
                 + K      +           +N +      +  ++      Y F K+HAAAY +
Sbjct: 1222 KTMEFVRKGRGLTDEMV-----EAMKENNVPDWYLDSCRKI-----KYMFPKAHAAAYVL 1271

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + AA  T+   + + I                             
Sbjct: 1272 MAVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1331

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      DF +  + +     ++ G+G   A+ I+EA 
Sbjct: 1332 VLTVLEIMNEMAHRGFRLQPISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAQRIVEAR 1391

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             + PF S ED   +     L+++V++ L   G+L      + QL
Sbjct: 1392 EEGPFLSKEDLNKKA---GLSQKVIDYLDELGSLPDL-PDKAQL 1431



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G  +++  +++ A     A+A+TD N + +  +    A   GI+ I 
Sbjct: 334 VEFHLHTSMSQMDGIPNISAYVEQAAKWGHQALAVTDHNVVQAFPDAHNAAEKHGIKMIY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 394 GMEGMLVDDGVPIAYKPTDRNLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 451

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 452 DKFERFSNPHERLSETIINLTHITDDMLTDA------PEIEEVLTEFKEWVGDAIFVA 503


>gi|27467858|ref|NP_764495.1| DNA polymerase III PolC [Staphylococcus epidermidis ATCC 12228]
 gi|32469713|sp|Q8CPG6|DPO3_STAES RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|27315403|gb|AAO04537.1|AE016747_34 DNA polymerase III, alpha chain PolC-type [Staphylococcus epidermidis
            ATCC 12228]
          Length = 1442

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 160/944 (16%), Positives = 308/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+        +  ++ N K+TN+          + L+V   EG + L ++
Sbjct: 583  IKMVQQMKELGV--------NNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKI 634

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EG+++ T    G +  A         EK    + 
Sbjct: 635  VSAS-LVKYYYRTPRIPRSLLNEY-REGILIGTACDEGELFTAVMQKDQSEVEKIAKFYD 692

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    +  +P++AT N+ +L E D  A 
Sbjct: 693  FIEVQPPALYQDLMDRELIRDNETLTQIYKRLIDAGKSANIPVIATGNAHYLYEHDAIAR 752

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V      +  ++  
Sbjct: 753  KILIASQPGNPL--NRSTLPEAHFRTTDEMLDDFHFLGEEKAYEIVVTNTNELANKIEKV 810

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI  +      D        E+R  + +  +    +         Q    RL+ EL+ I
Sbjct: 811  VPIKDKLFTPRMDG----ANEEIRELSYSNAKKLYGEDL------PQIVIDRLEKELDSI 860

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                FS  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 861  IGNGFSVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCK 919

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 920  TSEFFDDGSVGSGFDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 979

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 980  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGFV-KGYLNDQGIHKRGAE---------- 1028

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1029 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1065

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1066 QFPADDQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1122

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1123 KETMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1182

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I      +  ++     +++Y         + +G   S A 
Sbjct: 1183 G-------TDVWLGNAQELIRQGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1227

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
                 + K      +           +N +      +  ++      Y F K+HAAAY +
Sbjct: 1228 KTMEFVRKGRGLTDEMV-----EAMKENNVPDWYLDSCRKI-----KYMFPKAHAAAYVL 1277

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + AA  T+   + + I                             
Sbjct: 1278 MAVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1337

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      DF +  + +     ++ G+G   A+ I+EA 
Sbjct: 1338 VLTVLEIMNEMAHRGFRLQPISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAQRIVEAR 1397

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             + PF S ED   +     L+++V++ L   G+L      + QL
Sbjct: 1398 EEGPFLSKEDLNKKA---GLSQKVIDYLDELGSLPDL-PDKAQL 1437



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G  +++  +++ A     A+A+TD N + +  +    A   GI+ I 
Sbjct: 340 VEFHLHTSMSQMDGIPNISAYVEQAAKWGHQALAVTDHNVVQAFPDAHNAAEKHGIKMIY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 400 GMEGMLVDDGVPIAYKPTDRNLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 457

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 458 DKFERFSNPHERLSETIINLTHITDDMLTDA------PEIEEVLTEFKEWVGDAIFVA 509


>gi|251810695|ref|ZP_04825168.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805855|gb|EES58512.1| DNA polymerase III PolC [Staphylococcus epidermidis BCM-HMP0060]
          Length = 1442

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 160/944 (16%), Positives = 308/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+        +  ++ N K+TN+          + L+V   EG + L ++
Sbjct: 583  IKMVQQMKELGV--------NNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKI 634

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EG+++ T    G +  A         EK    + 
Sbjct: 635  VSAS-LVKYYYRTPRIPRSLLNEY-REGILIGTACDEGELFTAVMQKDQSEVEKIAKFYD 692

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    +  +P++AT N+ +L E D  A 
Sbjct: 693  FIEVQPPALYQDLMDRELIRDNETLTQIYKRLIDAGKSANIPVIATGNAHYLYEHDAIAR 752

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V      +  ++  
Sbjct: 753  KILIASQPGNPL--NRSTLPEAHFRTTDEMLDDFHFLGEEKAYEIVVTNTNELANKIEKV 810

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI  +      D        E+R  + +  +    +         Q    RL+ EL+ I
Sbjct: 811  VPIKDKLFTPRMDG----ANEEIRELSYSNAKKLYGEDL------PQIVIDRLEKELDSI 860

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                FS  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 861  IGNGFSVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCK 919

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 920  TSEFFDDGSVGSGFDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 979

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 980  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGFV-KGYLNDQGIHKRGAE---------- 1028

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1029 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1065

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1066 QFPADDQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1122

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1123 KETMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1182

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I      +  ++     +++Y         + +G   S A 
Sbjct: 1183 G-------TDVWLGNAQELIRQGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1227

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
                 + K      +           +N +      +  ++      Y F K+HAAAY +
Sbjct: 1228 KTMEFVRKGRGLTDEMV-----EAMKENNVPDWYLDSCRKI-----KYMFPKAHAAAYVL 1277

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + AA  T+   + + I                             
Sbjct: 1278 MAVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKEMYSRYMDLGKKEKD 1337

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      DF +  + +     ++ G+G   A+ I+EA 
Sbjct: 1338 VLTVLEIMNEMAHRGFRLQPISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAQRIVEAR 1397

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             + PF S ED   +     L+++V++ L   G+L      + QL
Sbjct: 1398 EEGPFLSKEDLNKKA---GLSQKVIDYLDELGSLPDL-PDKAQL 1437



 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G  +++  +++ A     A+A+TD N + +  +    A   GI+ I 
Sbjct: 340 VEFHLHTSMSQMDGIPNISAYVEQAAKWGHQALAVTDHNVVQAFPDAHIAAEKHGIKMIY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 400 GMEGMLVDDGVPIAYKPTDRNLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 457

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 458 DKFERFSNPHERLSETIINLTHITDDMLTDA------PEIEEVLTEFKEWVGDAIFVA 509


>gi|73919252|sp|Q5HPS7|DPO3_STAEQ RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|329736245|gb|EGG72517.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            epidermidis VCU028]
 gi|329736547|gb|EGG72813.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            epidermidis VCU045]
          Length = 1438

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 160/944 (16%), Positives = 308/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+        +  ++ N K+TN+          + L+V   EG + L ++
Sbjct: 579  IKMVQQMKELGV--------NNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKI 630

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EG+++ T    G +  A         EK    + 
Sbjct: 631  VSAS-LVKYYYRTPRIPRSLLNEY-REGILIGTACDEGELFTAVMQKDQSEVEKIAKFYD 688

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    +  +P++AT N+ +L E D  A 
Sbjct: 689  FIEVQPPALYQDLMDRELIRDNETLTQIYKRLIDAGKSANIPVIATGNAHYLYEHDAIAR 748

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V      +  ++  
Sbjct: 749  KILIASQPGNPL--NRSTLPEAHFRTTDEMLDDFHFLGEEKAYEIVVTNTNELANKIEKV 806

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI  +      D        E+R  + +  +    +         Q    RL+ EL+ I
Sbjct: 807  VPIKDKLFTPRMDG----ANEEIRELSYSNAKKLYGEDL------PQIVIDRLEKELDSI 856

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                FS  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 857  IGNGFSVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCK 915

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 916  TSEFFDDGSVGSGFDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 975

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 976  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGFV-KGYLNDQGIHKRGAE---------- 1024

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1025 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1061

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1062 QFPADDQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1118

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1119 KETMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1178

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I      +  ++     +++Y         + +G   S A 
Sbjct: 1179 G-------TDVWLGNAQELIRQGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1223

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
                 + K      +           +N +      +  ++      Y F K+HAAAY +
Sbjct: 1224 KTMEFVRKGRGLTDEMV-----EAMKENNVPDWYLDSCRKI-----KYMFPKAHAAAYVL 1273

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + AA  T+   + + I                             
Sbjct: 1274 MAVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1333

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      DF +  + +     ++ G+G   A+ I+EA 
Sbjct: 1334 VLTVLEIMNEMAHRGFRLQPISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAQRIVEAR 1393

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             + PF S ED   +     L+++V++ L   G+L      + QL
Sbjct: 1394 EEGPFLSKEDLNKKA---GLSQKVIDYLDELGSLPDL-PDKAQL 1433



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G  +++  +++ A     A+A+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTSMSQMDGIPNISAYVEQAAKWGHQALAVTDHNVVQAFPDAHNAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 396 GMEGMLVDDGVPIAYKPTDRNLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 453

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 454 DKFERFSNPHERLSETIINLTHITDDMLTDA------PEIEEVLTEFKEWVGDAIFVA 505


>gi|148269487|ref|YP_001243947.1| DNA polymerase III PolC [Thermotoga petrophila RKU-1]
 gi|281411795|ref|YP_003345874.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
 gi|166217457|sp|A5IJJ8|DPO3_THEP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|147735031|gb|ABQ46371.1| DNA polymerase III catalytic subunit, PolC type [Thermotoga
            petrophila RKU-1]
 gi|281372898|gb|ADA66460.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
          Length = 1367

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 157/940 (16%), Positives = 311/940 (33%), Gaps = 196/940 (20%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            L F +     GI           + +   + +             +LV   +G + L +L
Sbjct: 514  LRFVEMMKKIGI---------TKLSEIENLKDTIDYTALKPFHCTILVQNKKGLKNLYKL 564

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  Y+        RI  S L E   EGL++ +   SG + RA    +S    + +  F 
Sbjct: 565  VSDSYIK-YFYGVPRILKSALIE-NREGLLVGSACISGELGRAALEGASDSELEEIAKFY 622

Query: 176  KLFGDRLYVNLQ-------RHRGYDRYRE----SQVVQLAYTHELPLVATNNSLFLSEED 224
                   Y+ +             DR R      ++ ++A      +V T +  FL  ED
Sbjct: 623  D------YIEVMPLDVIAEDEEDLDRERLKEVYRRLYRIAKKLNKFVVMTGDVHFLDPED 676

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
                  L+A   +   + +++P +      +   + + IF D   A E  +E   R + +
Sbjct: 677  ARGRAALLAPQGNR--NFENQPALYLRTTEEMLEKAMEIFEDEEIAREVVIENPNRIADM 734

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            ++   P+  +        I +  +  +R+  +                  +  ++R++ E
Sbjct: 735  IEEVQPLEKKLHPP----IIENADEIVRSLTMKRAYEIYGDPL------PEIVQKRVERE 784

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----- 399
            LN I    ++  +LI  + +Q +  +   VG  RGS   S+ A  L IT+++PL      
Sbjct: 785  LNAIINHGYAVLYLIAQELVQKSMSDGYVVG-SRGSVGSSLVANLLGITEVNPLPPHYRC 843

Query: 400  ------------------------------------FSLLFERFLNPDRMSMPDFDIDFC 423
                                                  + FE F+  +   +PD D++F 
Sbjct: 844  PECKYFKVVEDDRYGAGYDLPDKKCPVCGAPLRKDGHDIPFETFMGFEGDKVPDIDLNFS 903

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + ++   R+V+  +G + V +  T  ++  K+A+  V               +      
Sbjct: 904  GEYQERAHRFVEELFGKDHVYRAGTINTIAEKSAVGYV---------------RSYEEKT 948

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQ 541
               +    +                     +   + G+ R    H  G++I  +   +  
Sbjct: 949  GKKLRKAEMER-------------------LVSMITGVKRTTGQHPGGLMIIPKDKEVYD 989

Query: 542  LVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
              P+          +  T F  + I    L+K D LG    T ++   D        + +
Sbjct: 990  FTPIQYPANDRNAGVFTTHFAYETIHD-DLVKIDALGHDDPTFIKMLKDLTG--IDPMTI 1046

Query: 599  SLIPFDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
             +   D    +            L +  GT GI +  +  +R  L   +P    +++ + 
Sbjct: 1047 PMDDPDTLAIFSSVKPLGVDPVELESDVGTYGIPEFGTEFVRGMLVETRPKSFAELVRIS 1106

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             L                N ++ I   +  +  ++     ++ +         +  G   
Sbjct: 1107 GLSHG-------TDVWLNNARDWINLGYAKLSDVISCRDDIMNFL--------IHKGMEP 1151

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            S A  +   + K      +       S   K  + +    +   +      Y F K+HA 
Sbjct: 1152 SLAFKIMENVRKGKGITEE-----MESEMRKLKVPEWFIESCKRI-----KYLFPKAHAV 1201

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ-------------------- 807
            AY  ++++ A+ K HYP++F AA  T++ D  + +                         
Sbjct: 1202 AYVSMAFRIAYFKVHYPLQFYAAYFTIKGDQFDPVLVLKGKEAIKRRLRELKAMTGKDVQ 1261

Query: 808  ------------DARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIM 854
                        +        +PP +       F +  N +      + G+G + A  I+
Sbjct: 1262 KKNEESVLEVVLEMILRGFSFLPPDIFKSDAKKFLIEGNSLRIPFNKLPGLGDSVAESIV 1321

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             A  +KPF S+ED   R    K+N+  +E +   G L   
Sbjct: 1322 RAREEKPFTSVEDLMKRT---KVNKNHIELMRSLGVLGSL 1358



 Score =  115 bits (288), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 1/102 (0%)

Query: 2   TQYLEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            + ++ SP   V L  H+ +S  +    +N  + +      PA+A+TD  N+ +   F  
Sbjct: 260 AKRMDNSPVKRVELHAHTKFSDQDAITDVNEYVKRAKEWGFPAVALTDHGNVQAIPYFYD 319

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
            A  AGI+PI G +  +       + N          + V+L
Sbjct: 320 AAKEAGIKPIFGIEAYLVSDVEPVIRNLSYDSSFENATFVVL 361


>gi|282876304|ref|ZP_06285171.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            epidermidis SK135]
 gi|281295329|gb|EFA87856.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            epidermidis SK135]
          Length = 1438

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 160/944 (16%), Positives = 308/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+        +  ++ N K+TN+          + L+V   EG + L ++
Sbjct: 579  IKMVQQMKELGV--------NNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKI 630

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EG+++ T    G +  A         EK    + 
Sbjct: 631  VSAS-LVKYYYRTPRIPRSLLNEY-REGILIGTACDEGELFTAVMQKDQSEVEKIAKFYD 688

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    +  +P++AT N+ +L E D  A 
Sbjct: 689  FIEVQPPALYQDLMDRELIRDNETLTQIYKRLIDAGKSANIPVIATGNAHYLYEHDAIAR 748

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V      +  ++  
Sbjct: 749  KILIASQPGNPL--NRSTLPEAHFRTTDEMLDDFHFLGEEKAYEIVVTNTNELANKIEKV 806

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI  +      D        E+R  + +  +    +         Q    RL+ EL+ I
Sbjct: 807  VPIKDKLFTPRMDG----ANEEIRELSYSNAKKLYGEDL------PQIVIDRLEKELDSI 856

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                FS  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 857  IGNGFSVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCK 915

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 916  TSEFFDDGSVGSGFDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 975

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 976  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGFV-KGYLNDQGIHKRGAE---------- 1024

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1025 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1061

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1062 QFPADDQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1118

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1119 KETMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1178

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I      +  ++     +++Y         + +G   S A 
Sbjct: 1179 G-------TDVWLGNAQELIRQGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1223

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
                 + K      +           +N +      +  ++      Y F K+HAAAY +
Sbjct: 1224 KTMEFVRKGRGLTDEMV-----EAMKENNVPDWYLDSCRKI-----KYMFPKAHAAAYVL 1273

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + AA  T+   + + I                             
Sbjct: 1274 MAVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKEMYSRYMDLGKKEKD 1333

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      DF +  + +     ++ G+G   A+ I+EA 
Sbjct: 1334 VLTVLEIMNEMAHRGFRLQPISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAQRIVEAR 1393

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             + PF S ED   +     L+++V++ L   G+L      + QL
Sbjct: 1394 EEGPFLSKEDLNKKA---GLSQKVIDYLDELGSLPDL-PDKAQL 1433



 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G  +++  +++ A     A+A+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTSMSQMDGIPNISAYVEQAAKWGHQALAVTDHNVVQAFPDAHIAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 396 GMEGMLVDDGVPIAYKPTDRNLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 453

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 454 DKFERFSNPHERLSETIINLTHITDDMLTDA------PEIEEVLTEFKEWVGDAIFVA 505


>gi|15643342|ref|NP_228386.1| DNA polymerase III PolC [Thermotoga maritima MSB8]
 gi|6225287|sp|Q9ZHF6|DPO3_THEMA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|4981093|gb|AAD35661.1|AE001732_6 DNA polymerase III, alpha subunit [Thermotoga maritima MSB8]
 gi|3930535|gb|AAC80438.1| DNA polymerase III [Thermotoga maritima]
          Length = 1367

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 157/940 (16%), Positives = 312/940 (33%), Gaps = 196/940 (20%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            L F +     GI           + +  K+ +             +LV   +G + L +L
Sbjct: 514  LRFVEMMKKIGI---------TKLSEMEKLKDTIDYTALKPFHCTILVQNKKGLKNLYKL 564

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  Y+        RI  S L E   EGL++ +   SG + RA    +S    + +  F 
Sbjct: 565  VSDSYIK-YFYGVPRILKSELIE-NREGLLVGSACISGELGRAALEGASDSELEEIAKFY 622

Query: 176  KLFGDRLYVNLQ-------RHRGYDRYRE----SQVVQLAYTHELPLVATNNSLFLSEED 224
                   Y+ +             DR R      ++ ++A      +V T +  FL  ED
Sbjct: 623  D------YIEVMPLDVIAEDEEDLDRERLKEVYRKLYRIAKKLNKFVVMTGDVHFLDPED 676

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
                  L+A   +   + +++P +      +   + + IF D   A E  +E   R + +
Sbjct: 677  ARGRAALLAPQGNR--NFENQPALYLRTTEEMLEKAIEIFEDEEIAREVVIENPNRIADM 734

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            ++   P+  +        I +  +  +RN  +                  +  ++R++ E
Sbjct: 735  IEEVQPLEKKLHPP----IIENADEIVRNLTMKRAYEIYGDPL------PEIVQKRVEKE 784

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----- 399
            LN I    ++  +LI  + +Q +  +   VG  RGS   S+ A  L IT+++PL      
Sbjct: 785  LNAIINHGYAVLYLIAQELVQKSMSDGYVVG-SRGSVGSSLVANLLGITEVNPLPPHYRC 843

Query: 400  ------------------------------------FSLLFERFLNPDRMSMPDFDIDFC 423
                                                  + FE F+  +   +PD D++F 
Sbjct: 844  PECKYFEVVEDDRYGAGYDLPNKNCPRCGAPLRKDGHGIPFETFMGFEGDKVPDIDLNFS 903

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + ++   R+V+  +G + V +  T  ++  ++A+  V               +      
Sbjct: 904  GEYQERAHRFVEELFGKDHVYRAGTINTIAERSAVGYV---------------RSYEEKT 948

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQ 541
               +    +                     +   + G+ R    H  G++I  +   +  
Sbjct: 949  GKKLRKAEMER-------------------LVSMITGVKRTTGQHPGGLMIIPKDKEVYD 989

Query: 542  LVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
              P+          +  T F  + I    L+K D LG    T ++   D        + +
Sbjct: 990  FTPIQYPANDRNAGVFTTHFAYETIHD-DLVKIDALGHDDPTFIKMLKDLTG--IDPMTI 1046

Query: 599  SLIPFDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
             +   D    +            L +  GT GI +  +  +R  L   +P    +++ + 
Sbjct: 1047 PMDDPDTLAIFSSVKPLGVDPVELESDVGTYGIPEFGTEFVRGMLVETRPKSFAELVRIS 1106

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             L                N ++ I   +  +  ++     ++ +         +  G   
Sbjct: 1107 GLSHG-------TDVWLNNARDWINLGYAKLSEVISCRDDIMNFL--------IHKGMEP 1151

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            S A  +   + K      +       S   +  + +    +   +      Y F K+HA 
Sbjct: 1152 SLAFKIMENVRKGKGITEE-----MESEMRRLKVPEWFIESCKRI-----KYLFPKAHAV 1201

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ-------------------- 807
            AY  ++++ A+ K HYP++F AA  T++ D  + +                         
Sbjct: 1202 AYVSMAFRIAYFKVHYPLQFYAAYFTIKGDQFDPVLVLRGKEAIKRRLRELKAMPAKDAQ 1261

Query: 808  ------------DARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIM 854
                        +        +PP +       F +  N +      + G+G + A  I+
Sbjct: 1262 KKNEVSVLEVALEMILRGFSFLPPDIFKSDAKKFLIEGNSLRIPFNKLPGLGDSVAESII 1321

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             A  +KPF S+ED   R    K+N+  +E +   G L   
Sbjct: 1322 RAREEKPFTSVEDLMKRT---KVNKNHIELMKSLGVLGDL 1358



 Score =  116 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 1/102 (0%)

Query: 2   TQYLEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            + ++KSP   V L  H+ +S  +    +N  + +      PAIA+TD  N+ +   F  
Sbjct: 260 AKRMDKSPVKRVELHAHTKFSDQDAITDVNEYVKRAKEWGFPAIALTDHGNVQAIPYFYD 319

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
            A  AGI+PI G +  +       + N          + V+L
Sbjct: 320 AAKEAGIKPIFGIEAYLVSDVEPVIRNLSDDSTFGDATFVVL 361


>gi|253682510|ref|ZP_04863307.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum D str. 1873]
 gi|253562222|gb|EES91674.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum D str. 1873]
          Length = 1443

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 155/904 (17%), Positives = 294/904 (32%), Gaps = 190/904 (21%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                +++L     G + L +L+S   L D   +  R+  S +++   EGLI+ +   +G 
Sbjct: 617  PTYHLIILAKNQVGLKNLYKLISYSNL-DYFFRKPRMPKSLIEQY-KEGLIIGSACEAGE 674

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQV 200
            + +A     SQ   K ++ F        Y+ +Q     +              +    ++
Sbjct: 675  VYKAVLEGKSQEELKEIIKFYD------YLEIQPIMNNEFMLKKGIVKSEEQLKEVNRKI 728

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
              L   + LP+VAT +  FL  +D +  ++ +        ++   P          +   
Sbjct: 729  YNLGKENGLPIVATGDVHFLDPKDAKFREI-LMKGQGFSDAEDQPPLYLKTTNEMLKEFE 787

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
                 +         E+       +     ++    ++      +  E ++RN  +    
Sbjct: 788  YLGKDECK-------EVVIYNPQKIAEEIEVIKPIPDETFPPKIEGAEEDIRNMTLEKAH 840

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                  +I      +    RL+ ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 841  ------SIYGNPLPKVVHDRLEKELNSIINNGYAVLYLIAHKLVAKSLKDGYLVG-SRGS 893

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++ L                                          
Sbjct: 894  VGSSLVATMSDITEVNGLPPHYVCPNCKNSEFFTDGSVSSGADLPPKNCPNCGSEYNRNG 953

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + FE FL  +    PD D++F  D + ++ RY +  +G     +  T G++  K A  
Sbjct: 954  HDIPFETFLGFNGDKEPDIDLNFSGDNQGDIHRYTEVLFGKGHTFKAGTIGTIADKTAYG 1013

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V + L                                    +    S   +  ++Q   
Sbjct: 1014 FVKKYLD----------------------------------EKNLIVSQAEIERLTQGCT 1039

Query: 520  GLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R +  H  GI  V  D  +    P+         D+  T F+   I    L+K D L
Sbjct: 1040 GVKRTSGQHPGGIMVVPSDNEIYNFCPIQHPADDADSDIITTHFDYHSI-SGRLLKLDIL 1098

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQLES 625
            G    T+L+   D      + + +         T           L    G  GI +  +
Sbjct: 1099 GHDDPTVLRMLKDITGLDPITIPIGDEKVLSLFTSPEALGVTAEELECPVGCYGIPEFGT 1158

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
              +RQ L   QP    D++ +  L          V+ N      K       +   +   
Sbjct: 1159 KFVRQMLVDTQPKTFSDLVRISGLSH-----GTDVWLNNAQYFIKEGYT--TLKDCIATR 1211

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
              +++Y         L  G    EA  +   + K      +       +   ++ +    
Sbjct: 1212 DDIMVYL--------LHKGLPPKEAFTIMEKVRKGKGLTEE-----HEALMREHKVPDWY 1258

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL----------- 794
              +  ++      Y F K HA AY +++ + A+ K +YP  + A   T+           
Sbjct: 1259 IESCKKI-----KYMFPKGHAVAYVMMAVRIAYYKVYYPQAYYATYFTVRGIDDFDADLI 1313

Query: 795  ------EMDNVEKIKKFCQ-----------------DARQFNIQIMPPSVNT-PCVDFKV 830
                      +++I                      +  + NI+ +   +       F +
Sbjct: 1314 VKGEDVVKRKMDEINALGNNATQKDKGLLTNLELAFEMYKRNIKFLKVDIYKSHPTKFLI 1373

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             ++ I   ++A+ GVGT  A+ I EA  D  F S ED   R    K+++ V+E+L   G 
Sbjct: 1374 ENDDIRPPISALAGVGTNAAKSIAEAKKDGEFISKEDLRKR---SKVSKTVIEALSEHGC 1430

Query: 891  LDCF 894
            L+  
Sbjct: 1431 LEGL 1434



 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 35/86 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++G  S   ++++ A    PA+AITD   + +  E    A    I+ I 
Sbjct: 345 VELHLHTQMSAMDGMSSAKALIERAAKWGHPAVAITDHGVVQAYPEAMDAAKKYNIKVIY 404

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       +TN          
Sbjct: 405 GVEAYLVNDGVPIVTNVKGQTINNTF 430


>gi|314933443|ref|ZP_07840808.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            caprae C87]
 gi|313653593|gb|EFS17350.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            caprae C87]
          Length = 1442

 Score =  229 bits (583), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 162/944 (17%), Positives = 310/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+       L+  ++ N K+TN+          + L+V   EG + L ++
Sbjct: 583  IKMIQQMKELGV-------LN-HLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKI 634

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EG+++ T    G +  A         EK    + 
Sbjct: 635  VSAS-LVKYYYRTPRIPRSLLNEY-REGILVGTACDEGELFTAVMQKDQSEVEKIAKYYD 692

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          ++++   +  +P++AT N  +L E D  A 
Sbjct: 693  FIEVQPPALYQDLMDRELIRDHETLTEIYQRLIEAGESANIPVIATGNVHYLYEHDAIAR 752

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V      +  ++  
Sbjct: 753  KILIASQPGNPL--NRSTLPEAHFRTTDEMLDEFHFLGEEKAHEIVVRNTNELAERIERV 810

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI  +      +       +E+R  + +  +    +         Q    RL+ EL  I
Sbjct: 811  VPIKDKLFTPRMEG----ANDEIRELSYSNAKKLYGEDL------PQIVIDRLEKELASI 860

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                FS  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 861  IGNGFSVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCK 919

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 920  TSEFFDDGSVGSGFDLPDKKCPTCGNDLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 979

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 980  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGFV-KGYLNDQGIHKRGAE---------- 1028

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1029 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1065

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1066 QFPADDQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1122

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             D  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1123 KDTMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTYSELVQISGLSH 1182

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I      +  ++     +++Y         + +G   S A 
Sbjct: 1183 G-------TDVWLGNAQELIRQGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1227

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
                 + K      +           +N +      +  ++      Y F K+HAAAY +
Sbjct: 1228 KTMEFVRKGRGLTDEMV-----EAMKENDVPDWYLDSCRKI-----KYMFPKAHAAAYVL 1277

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + AA  T+   + + I                             
Sbjct: 1278 MAVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1337

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      DF + ++ +     A+ G+G   A+ I+EA 
Sbjct: 1338 VLTVLEIMNEMAHRGFRMQPISLEKSQAFDFIIEEDTLIPPFVAVPGLGENVAKRIVEAR 1397

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             + PF S ED   +     L+++V++ L   G+L      + QL
Sbjct: 1398 EEGPFLSKEDLNKKA---GLSQKVIDYLDEMGSLPGL-PDKAQL 1437



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 65/178 (36%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++++ +++ A     AIA+TD N + +  +    A   GI+ I 
Sbjct: 340 VEFHLHTAMSQMDGIPNISSYVEQAAEWGHSAIAVTDHNVVQAFPDAHNAAEKHGIKMIY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 400 GMEGMLVDDGVPIAYKPTDRVLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 457

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 458 DKFERFSNPHERLSETIINLTHITDDMLTDA------PEIEEVLTEFKEWVGDAIFVA 509


>gi|18310673|ref|NP_562607.1| DNA polymerase III PolC [Clostridium perfringens str. 13]
 gi|168214476|ref|ZP_02640101.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens CPE str. F4969]
 gi|24418366|sp|Q8XJR3|DPO3_CLOPE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|18145354|dbj|BAB81397.1| DNA polymerase III alpha subunit [Clostridium perfringens str. 13]
 gi|170714031|gb|EDT26213.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens CPE str. F4969]
          Length = 1449

 Score =  229 bits (583), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 163/981 (16%), Positives = 309/981 (31%), Gaps = 227/981 (23%)

Query: 55   ALEF-SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP--SIVLLVSTAEGYQR 111
             L+F  +K            ++DI     L            +P   I++L     G + 
Sbjct: 589  ILKFSFKKMKE---------EMDIHDVKTLNEKYLSNIDVKKLPLHHIIILAKNQTGIKN 639

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L +LVS  +L D   +  R+  S + E   EGLI+ +   +G + +A     +    K +
Sbjct: 640  LYKLVSMAHL-DYFARRPRLPKSIITEY-REGLIIGSACEAGQLYKAVLEGKTDGELKEI 697

Query: 172  LTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNS 217
             +F        Y+ +Q  +  +              R    ++  L    + P+VAT + 
Sbjct: 698  ASFYD------YLEIQPIQNNEFLIRKGNVKDEEELRELNRKIYDLGKEMDKPVVATCDC 751

Query: 218  LFLSEEDYEAHDVLMAVA-HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
             FL   D     ++MA   +    +Q      T +  +K    +               E
Sbjct: 752  HFLDPNDEVFRRIIMAGQGYGDADNQPPLYFRTTNEMMKEFEYLGEE---------ACRE 802

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
            +    +  +      +    ++      +  E E+RN  +  +     +         + 
Sbjct: 803  VVIENTQKIADMVEAVKPIPDETFPPKIEGAEEEIRNMTMNKVHSIYGENL------PEV 856

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
             ++RLD ELN I    ++  +LI    +  + ++   VG  RGS   S  A    IT+++
Sbjct: 857  VQKRLDKELNSIINNGYAVLYLIAQKLVAKSLEDGYLVG-SRGSVGSSFVATMSDITEVN 915

Query: 397  ----------------------------PLRFSLLF-------------ERFLNPDRMSM 415
                                        P +                  E FL  +    
Sbjct: 916  GLPPHYVCPNCKKSEFFLDGSISSGADLPDKNCPDCGAKYIKDGHDIPFETFLGFEGDKE 975

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  + +  V +Y +  +G   V +  T G++  K A   V + LQ         
Sbjct: 976  PDIDLNFSGEYQAVVHKYTEVLFGKGYVFKAGTIGTVAEKTAYGFVKKYLQ--------- 1026

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--V 533
                  +    VS   I                     ++    G+ R +  H  GI  V
Sbjct: 1027 ------ERGLVVSQAEIER-------------------LTIGCTGIKRTSGQHPGGIMVV 1061

Query: 534  IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
              D  +    P+         D+  T F+   I    L+K D LG    T+L+   D   
Sbjct: 1062 PNDNEIYNFCPIQHPADDVNTDIITTHFDYHSI-SGRLLKLDILGHDDPTVLRMLQDLTG 1120

Query: 591  QRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
                 + L+        T           L    G+ G+ +  +  +RQ L   QP    
Sbjct: 1121 LDPKTIPLNDPKVISLFTSPDALGVTKEELGCEVGSYGLPEFGTKFVRQMLVDTQPKSFA 1180

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            D++ +  L          V+ N      K       +   +     +++Y         +
Sbjct: 1181 DLVRISGLSH-----GTDVWLNNAQYFIKEGYT--TLKDCIATRDDIMVYL--------M 1225

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                    A  +   + K      + +     +   +  +      +   +      Y F
Sbjct: 1226 YKDLPPKTAFTIMEKVRKGKGLSEEDE-----ALMREKNVPDWYIESCKRI-----KYMF 1275

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------------------- 800
             K HA AY +++ + A+ K +YP  +     T+  D+ +                     
Sbjct: 1276 PKGHAVAYVMMAVRIAYYKVYYPEAYYTTYFTVRADDFDADLICKGEEAIKAKMEELNSL 1335

Query: 801  ------------KIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGT 847
                         I +   +  +  +  +   +       FK+ ++ I   L A++GVG 
Sbjct: 1336 GNNISVKEKGLLTILEISYEMYKRGLNFLKVDLYKSEATKFKIEEDGIRPPLNALQGVGD 1395

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              A+ I+E   +  F S ED   R    K+++ V+E+L   G L+               
Sbjct: 1396 NAAKSIVECRVNGEFISKEDLRLR---SKVSKTVIETLDNHGCLEGM------------- 1439

Query: 908  IQKYAQWVEKNRTNKHENIFA 928
                       + +   ++F 
Sbjct: 1440 -----------QESNQLSLFG 1449



 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 36/86 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++   + + I+++ A     A+AITD   + +  +    A    I+ I 
Sbjct: 350 VELHMHTTMSSMDAVTAASKIVERAAKFGHKAVAITDHGVVQAFPDAQIAAKKNNIKVIY 409

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       + N  +  F    
Sbjct: 410 GVEGYLADNGTPIVINGHEESFDDEY 435


>gi|228475024|ref|ZP_04059752.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            hominis SK119]
 gi|228271009|gb|EEK12397.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            hominis SK119]
          Length = 1438

 Score =  228 bits (582), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 159/928 (17%), Positives = 309/928 (33%), Gaps = 181/928 (19%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTV--PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            +L +    ++      +  +       + L+V   +G + L ++VS   L+    ++ RI
Sbjct: 587  ELGVANHKDINKKLSNEDAYKRARPTHVTLIVQNQDGLKNLFKIVSAS-LVKYYYRTPRI 645

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLY-----V 184
              S L E   EG+++ T    G +  A         EK    +   ++   +LY      
Sbjct: 646  PRSLLNEY-REGILVGTACDEGELFTAVMQRDQSEVEKIAKYYDFIEVQPPKLYQDLIDR 704

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             L R          ++++   +  +P++AT N+ +L E D  A  +L+A      +++  
Sbjct: 705  ELIRDTETLYEIYDRILKAGESTGIPVIATGNAHYLFEHDAIARKILIASQPGNPLNRST 764

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             P        +   E   +  D   A +  V+     +  ++   PI  +      +   
Sbjct: 765  LPEAHFRTTDEMLDEFHFLGEDK--AYDIVVKNTNELADRIEKVIPIKDQLFTPRMEG-- 820

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                 E+R  +    +              Q    RL+ EL+ I    FS  +LI    +
Sbjct: 821  --ANEEIRELSYTNAKKLYGDDL------PQIVIDRLEKELDSIIGNGFSVIYLISQRLV 872

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------- 399
            + +  +   VG  RGS   S  A    IT+++PL                          
Sbjct: 873  KKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPHCKTSEFFDDGSVGSGFDL 931

Query: 400  ----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                              + FE FL      +PD D++F  + +     Y +  +G ++V
Sbjct: 932  PDKTCETCGGELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPHAHNYTKVLFGEDKV 991

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
             +  T G++  K A   V +          R  +                          
Sbjct: 992  FRAGTIGTVAEKTAFGFV-KGYLNDQGIHKRGAE-------------------------- 1024

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRSD---LPVTQF 558
                   +  + +   G+ R    H  GI  V     +    P+             T F
Sbjct: 1025 -------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPADDQSAPWMTTHF 1077

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY--------- 609
            +   I    ++K D LG    T+++   D          + +   +  + +         
Sbjct: 1078 DFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDDKETMQIFSSPASLGVT 1134

Query: 610  --HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
               +L   GT G+ +  +  +RQ LE  +P    +++ +  L                N 
Sbjct: 1135 EEDILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG-------TDVWLGNA 1187

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E I S    +  ++     +++Y         + +G   S A     ++ K      + 
Sbjct: 1188 QELIRSGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAFKTMESVRKGKGLTDE- 1238

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
                 I+    N +      +  ++      Y F K+HAAAY +++ + A+ K H+P+ +
Sbjct: 1239 ----MINAMKANDVPDWYLDSCLKI-----KYMFPKAHAAAYVLMAVRIAYFKVHHPLYY 1289

Query: 788  LAASMTLEMDNVEKIKKF---------------------------------CQDARQFNI 814
             AA  T+   + + I                                      +      
Sbjct: 1290 YAAYFTIRASDFDLITMIKDKESIKNTVKDMYSRYMDLGKKEKDVLTVLEIMNEMAHRGF 1349

Query: 815  QIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
            ++ P S+      DF + D+ +     A+ G+G   A+ I+EA  D PF S ED   +  
Sbjct: 1350 KMQPISLEKSQAFDFIIEDDTLIPPFIAVPGLGENVAKRIVEAREDGPFLSKEDLNKKA- 1408

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQL 901
               L+++++E L   G+L      + QL
Sbjct: 1409 --GLSQKIIEYLDDLGSLPDL-PDKAQL 1433



 Score = 85.2 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 68/179 (37%), Gaps = 14/179 (7%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +HSS S ++G  +++  +++ AA    AIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHSSMSQMDGIPNISAYVNQAAAWGHKAIAVTDHNVVQAFPDAHSAAEKNGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++       + K    
Sbjct: 396 GMEGMLVDDGVPIAYKPTDRNLKDATYVVFDVET-TGLSNQYDQIIELA--AVKVKDGEI 452

Query: 131 ICL----SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
           I      S   E  +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 453 IDKFERFSNPNEKLSETIINLTHITDDMLVDA------PEIEEVLTEFKEWVGDAIFVA 505


>gi|110799061|ref|YP_696378.1| DNA polymerase III PolC [Clostridium perfringens ATCC 13124]
 gi|168211421|ref|ZP_02637046.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens B str. ATCC 3626]
 gi|110673708|gb|ABG82695.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens ATCC 13124]
 gi|170710571|gb|EDT22753.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens B str. ATCC 3626]
          Length = 1449

 Score =  228 bits (582), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 164/981 (16%), Positives = 309/981 (31%), Gaps = 227/981 (23%)

Query: 55   ALEF-SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP--SIVLLVSTAEGYQR 111
             L+F  +K            ++DI     L            +P   I++L     G + 
Sbjct: 589  ILKFSFKKMKE---------EMDIHDVKTLNEKYLSNIDVKKLPLHHIIILAKNQTGIKN 639

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L +LVS  +L D   +  R+  S + E   EGLI+ +   +G + +A     +    K +
Sbjct: 640  LYKLVSMAHL-DYFARRPRLPKSIITEY-REGLIIGSACEAGQLYKAVLEGKTDGELKEI 697

Query: 172  LTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNS 217
             +F        Y+ +Q  +  +              R    ++  L    + P+VAT + 
Sbjct: 698  ASFYD------YLEIQPIQNNEFLIRKGNVKDEEELRELNRKIYDLGKEMDKPVVATCDC 751

Query: 218  LFLSEEDYEAHDVLMAVA-HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
             FL   D     ++MA   +    +Q      T +  +K    +               E
Sbjct: 752  HFLDPNDEVFRRIIMAGQGYGDADNQPPLYFRTTNEMMKEFEYLGEE---------ACRE 802

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
            +    +  +      +    ++      +  E E+RN  +  +     +         + 
Sbjct: 803  VVIENTQKIADMVEAVKPIPDETFPPKIEGAEEEIRNMTMNKVHSIYGENL------PEV 856

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
             ++RLD ELN I    ++  +LI    +  + ++   VG  RGS   S  A    IT+++
Sbjct: 857  VQKRLDKELNSIINNGYAVLYLIAQKLVAKSLEDGYLVG-SRGSVGSSFVATMSDITEVN 915

Query: 397  ----------------------------PLRFSLLF-------------ERFLNPDRMSM 415
                                        P +                  E FL  +    
Sbjct: 916  GLPPHYVCPNCKKSEFFLDGSISSGADLPDKNCPDCGAKYIKDGHDIPFETFLGFEGDKE 975

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  + +  V +Y +  +G   V +  T G++  K A   V + LQ         
Sbjct: 976  PDIDLNFSGEYQAVVHKYTEVLFGKGYVFKAGTIGTVAEKTAYGFVKKYLQ--------- 1026

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--V 533
                  +    VS   I                     ++    G+ R +  H  GI  V
Sbjct: 1027 ------ERGLVVSQAEIER-------------------LTIGCTGIKRTSGQHPGGIMVV 1061

Query: 534  IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
              D  +    P+         D+  T F+   I    L+K D LG    T+L+   D   
Sbjct: 1062 PNDNEIYNFCPIQHPADDVNTDIITTHFDYHSI-SGRLLKLDILGHDDPTVLRMLQDLTG 1120

Query: 591  QRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
                 + L+        T           L    G+ G+ +  +  +RQ L   QP    
Sbjct: 1121 LDPKTIPLNDPKVISLFTSPDALGVTKEELGCEVGSYGLPEFGTKFVRQMLVDTQPKSFA 1180

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            D++ +  L          V+ N      K       +   +     +++Y         +
Sbjct: 1181 DLVRISGLSH-----GTDVWLNNAQYFIKEGYT--TLKDCIATRDDIMVYL--------M 1225

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                    A  +   + K      D +     +   +  +      +   +      Y F
Sbjct: 1226 YKDLPPKTAFTIMEKVRKGKGLSEDDE-----ALMREKNVPDWYIESCKRI-----KYMF 1275

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------------------- 800
             K HA AY +++ + A+ K +YP  +     T+  D+ +                     
Sbjct: 1276 PKGHAVAYVMMAVRIAYYKVYYPEAYYTTYFTVRADDFDADLICKGEEAIKAKMEELNSL 1335

Query: 801  ------------KIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGT 847
                         I +   +  +  +  +   +       FK+ ++ I   L A++GVG 
Sbjct: 1336 GNNISVKEKGLLTILEISYEMYKRGLNFLKVDLYKSEATKFKIEEDGIRPPLNALQGVGD 1395

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              A+ I+E   +  F S ED   R    K+++ V+E+L   G L+               
Sbjct: 1396 NAAKSIVECRVNGEFISKEDLRLR---SKVSKTVIETLDNHGCLEGM------------- 1439

Query: 908  IQKYAQWVEKNRTNKHENIFA 928
                       + +   ++F 
Sbjct: 1440 -----------QESNQLSLFG 1449



 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 36/86 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++   + + I+++ A     A+AITD   + +  +    A    I+ I 
Sbjct: 350 VELHMHTTMSSMDAVTAASKIVERAAKFGHKAVAITDHGVVQAFPDAQIAAKKNNIKVIY 409

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       + N  +  F    
Sbjct: 410 GVEGYLADNGTPIVINGHEESFDDEY 435


>gi|229086370|ref|ZP_04218547.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
 gi|228696982|gb|EEL49790.1| DNA polymerase III polC-type [Bacillus cereus Rock3-44]
          Length = 1433

 Score =  228 bits (582), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 155/930 (16%), Positives = 296/930 (31%), Gaps = 188/930 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHVTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EGLI+ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGLIVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILISSQGGA-N 755

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                           +       F    +A E  V   ++ + ++    P+       + 
Sbjct: 756  PLNRHSLPPVHFRTTDEMLDCFSFLGEEKAKEIVVTNTQKVASLIGDVHPVKDDLYTPKI 815

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +      ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 816  EG----ADDETRDMSYEMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVSGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGVDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEEMRNNNVPGWYIESCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      DF +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATDFIIDGDTLIPPFNAVPGLGTNAAVSIVEARENGEFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
                K+++ ++E L   G L      + QL
Sbjct: 1405 ---SKVSKTIIEYLDSQGCLGDL-PDKNQL 1430



 Score = 76.4 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AGI+ I 
Sbjct: 332 VELHLHTPMSQMDAVTGVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGIKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNESHRLLEDETYVVF 421


>gi|222873367|gb|EEF10498.1| predicted protein [Populus trichocarpa]
          Length = 388

 Score =  228 bits (582), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 114/319 (35%), Gaps = 35/319 (10%)

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                G  +  A   F  +  F +YGF +SHAA++A++ Y +AW K +YP  F AA +  +
Sbjct: 1    MEARGYPRAFAERCFRQIEGFGEYGFPESHAASFALLVYASAWFKAYYPDVFCAAILNSQ 60

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD----------------------N 833
                    +  +DAR+  ++I    +N+   D  + +                      +
Sbjct: 61   PMGFYAPAQLVRDAREHGVEIREVDINSSKWDCTLEEASFDPARVADRHAGMRSIIRTED 120

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +      +KG+       ++       + S+ D   R     L++ V+  L  A A   
Sbjct: 121  AVRLGFRQVKGLAEADMEQLVRNRGVG-YRSVRDLWLR---SGLSKSVIARLAEADAFRS 176

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
             G  R   L ++       Q +++ R      +    +    +     +      S+   
Sbjct: 177  LGLDRRTALWAV-------QALDETRAADRLPLLDRPEINLGEDEPEVRLPSMPLSMHVV 229

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
            ++ + L      HP+   +  L    +   E       G  + +A +V+ +Q+  T K  
Sbjct: 230  HDYQSLSLSLKAHPVSFLRDQLAAEKVVPNERLQDLDNGRRVSVAGLVLIRQRPGTAKN- 288

Query: 1014 RIGWVTFSEPAKEYEANFF 1032
             + ++T  +         +
Sbjct: 289  -VIFMTIEDETGIANIVVW 306


>gi|187778984|ref|ZP_02995457.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC 15579]
 gi|187772609|gb|EDU36411.1| hypothetical protein CLOSPO_02579 [Clostridium sporogenes ATCC 15579]
          Length = 1442

 Score =  228 bits (582), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 150/905 (16%), Positives = 286/905 (31%), Gaps = 189/905 (20%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  +++L   A G + L +LVS+  L +   +  R+  S + E   EGLI+ +   +
Sbjct: 613  KEPTYHLIILAKNAVGLKNLYKLVSKSNL-EYFFKRPRMAKSLINEY-KEGLIIGSACEA 670

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRES 198
            G I +      ++   K ++ F        Y+ +Q     +              +    
Sbjct: 671  GQIYKEILKGKTKEELKNMIDFYD------YLEIQPLGNNEFLVKNGSVKDEEELKEINK 724

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++ +L   +  P+VAT +  FL EE +E    ++        +    P          + 
Sbjct: 725  KICELGEFYNKPVVATCDVHFLDEE-HEVFRRILMSGQGFSDADNQPPLYFRTTEEMLKE 783

Query: 259  EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
                             E+    +  +      +    E+      +  E ++RN  +  
Sbjct: 784  FEYLGEE-------KAKEVVIYNTNKIADMIDEIKPIPEETFPPKIEGAEEDIRNMTIKK 836

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
                            +   +RL  ELN I    ++  +LI    +  + ++   VG  R
Sbjct: 837  AHDIYGDPL------PEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SR 889

Query: 379  GSGAGSVTAYALTITDIDPLR--------------------------------------- 399
            GS   S  A    IT+++ L                                        
Sbjct: 890  GSVGSSFAATMSDITEVNGLPPHYICPKCKYSEFFTDGSVGSGADLEDKDCPKCGTKLIK 949

Query: 400  --FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
                + FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A
Sbjct: 950  DGHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTA 1009

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
               V + L                                    +    +   +  +S+ 
Sbjct: 1010 YGFVKKYLD----------------------------------EKNIKANNAEIERLSKG 1035

Query: 518  LEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFD 572
              G+ R +  H  GI  V  D  +    P+         D+  T F+   I    L+K D
Sbjct: 1036 CTGVKRTSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSI-SGRLLKLD 1094

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQL 623
             LG    T+L+   D        V L         T           +    GT G+ + 
Sbjct: 1095 ILGHDDPTVLRMLQDLTQVDPKAVPLGDPKVISLFTSTKALGVTEEDIDCPVGTYGLPEF 1154

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +RQ L   +P    +++ +  L          V+ N      K             
Sbjct: 1155 GTKFVRQMLLDTKPKSFAELVRISGLSH-----GTDVWLNNAQYFIKEGYT--------- 1200

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
              +  I  ++ +M       G     A  +   + K      +++     +   ++ +  
Sbjct: 1201 TIKDCISTRDDIMVYLLQ-KGLPPKSAFTIMEKVRKGKGLTEEQE-----ALMKEHDVPD 1254

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--- 800
                +  ++      Y F K HA AY +++ + A+ K +YP  +     ++  D+ +   
Sbjct: 1255 WYIESCKKI-----KYMFPKGHAVAYVMMAMRIAYFKVYYPKAYYTTYFSVRADDFDADL 1309

Query: 801  ------------------------------KIKKFCQDARQFNIQIMPPSVNTPCV-DFK 829
                                           I + C +  +  I+ +   +       F 
Sbjct: 1310 IVKGEEKIKEKMNELYAMGNNITQKDKGLLTILEICYEMYKRGIKFLKVDLYKSNATKFL 1369

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +  + I   L+A++GVG   A+ I EA  +  F S ED   R    K+ + V+E+L   G
Sbjct: 1370 IEGDSIRPPLSALQGVGKNAAKSIEEARLEGEFISKEDLRLRT---KVTKTVIETLANHG 1426

Query: 890  ALDCF 894
             L   
Sbjct: 1427 CLRGM 1431



 Score = 97.6 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 34/86 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++G   ++ ++ + A     A+AITD   + +  +    A    I+ I 
Sbjct: 343 VELHMHSQMSAMDGMTPVSELVKRAAKWGHKAVAITDHGVVQAYPDAMSAAKKGNIKVIY 402

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       ++  G        
Sbjct: 403 GIEAYLVDDGVPIVSKAGDKTIEDTF 428


>gi|326204061|ref|ZP_08193922.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
            2782]
 gi|325985828|gb|EGD46663.1| DNA polymerase III, alpha subunit [Clostridium papyrosolvens DSM
            2782]
          Length = 1433

 Score =  228 bits (582), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 155/930 (16%), Positives = 296/930 (31%), Gaps = 206/930 (22%)

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               G + I         +D     +       +    ++LV    G + L ++VS+ +L 
Sbjct: 585  KEKGCKTI---------KDIQNAFDGEINLKASSYHAIILVKNKVGLKNLYKIVSQSHLK 635

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                +  R+    L E   EGLI+ +   +G + RA   N S+    +++ F        
Sbjct: 636  -YFYKKPRVPKKLLMEY-REGLILGSACEAGELYRAILNNKSEEEISKIVRFYD------ 687

Query: 183  YVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
            Y+ +Q                    +    ++++L   H   +VAT +  F+   D E  
Sbjct: 688  YLEIQPLGNNQFLINNGKVSSQEELKKINKKIIRLGERHRKLVVATCDVHFMDPRD-EVF 746

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
              ++        +    P                      +A E  +E     + +++  
Sbjct: 747  RRILMAGRGFTDADNQAPLYLRTTDEMLEEFSYLGEE---KAREVVIENTNLIADMIESI 803

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
            AP+L        +  +++ EN                  I      +   QRL+ ELN I
Sbjct: 804  APVLEGTYPPNIEGAEQDIEN----------MAMTRAKEIYGEDLPEVVAQRLEKELNSI 853

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
             +  F+  +LI    +  +  +   VG  RGS   S  A    IT+++ L+         
Sbjct: 854  IKNGFAVMYLIAQKLVSKSLSDGYLVG-SRGSVGSSFVANMSGITEVNSLQPHYVCEKCK 912

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                            + + FE FL  D    PD D++F  D +
Sbjct: 913  YSEFVLDGTYDCGFDMPEKECPNCGNKLKKDGYDIPFETFLGFDGDKEPDIDLNFSGDYQ 972

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                +Y +  +G   V +  T  S+  K A   V   L                      
Sbjct: 973  PVAHKYTEELFGEGYVFRAGTIASVAEKTAYGYVKNYLD--------------------- 1011

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPM 545
                          R    +   +  + +   G+ R    H  GI+I  +   +    P+
Sbjct: 1012 -------------EREIIVTNSEINRLVKGCTGIKRTTGQHPGGIMIVPKDKEIFDFSPI 1058

Query: 546  YRDVRSDL--PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
             R         +T           ++K D LG    T+++     + +    VD + IP 
Sbjct: 1059 QRPADDTQSEIITTHFDYHFLHGSILKLDILGHDDPTVIR-----MLEDLTGVDATTIPI 1113

Query: 604  DDHETYHLLTTKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
             + +T  L  +                T  I +  +  +RQ L   +P    ++I +  L
Sbjct: 1114 GEEKTMSLFNSTEALGVKPEDIGSETGTFAIPEFGTKFVRQMLMDTKPRSFSELIRISGL 1173

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
                      V+ N              +      T    I     + I  + +G     
Sbjct: 1174 SH-----GTDVWLNNAQ----------ELIRNGITTLSQSICCRDDIMIYLMHAGLPPKT 1218

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            A  +   + K    + + +            + +    + +    K   Y F K+HAAAY
Sbjct: 1219 AFKIMEDVRKGKGVKDEYEVV----------MKENKVPDWYIQSCKKIKYMFPKAHAAAY 1268

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC----------------------- 806
             +++++ AW K +YP  F     T+  D+ +                             
Sbjct: 1269 VMMAFRIAWFKVYYPEAFYTTYFTVRADDFDAEMMAHGQDKVRNKIKEFEMKGNNITTKE 1328

Query: 807  ----------QDARQFNIQIMPPSVN-TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                       +     I  +P  +  +    F++ D  I   L A++G+G   A++I+E
Sbjct: 1329 KNVLTILEVVNEMYARGINFLPIHLYLSEATKFRIEDKGIRPPLNALQGLGGAAAQNIVE 1388

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            A  +  F S+++  ++    K+++ V+E L
Sbjct: 1389 ARKNGEFLSIDELRTKA---KISKSVIEIL 1415



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 33/86 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++G   +  ++ + A     AIAITD   + +  +    +    I+ I 
Sbjct: 337 VELHLHTQMSSMDGVTPVKELVKRAAQWGHKAIAITDHGIVQAYPDAYAASKKNNIKVIY 396

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       + +  +       
Sbjct: 397 GLECYLLDDSVPIVYDMKEHSLEDDF 422


>gi|242242547|ref|ZP_04796992.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144]
 gi|242233974|gb|EES36286.1| DNA polymerase III PolC [Staphylococcus epidermidis W23144]
          Length = 1442

 Score =  228 bits (582), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 160/944 (16%), Positives = 308/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+        +  ++ N K+TN+          + L+V   EG + L ++
Sbjct: 583  IKMVQQMKELGV--------NNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKI 634

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EG+++ T    G +  A         EK    + 
Sbjct: 635  VSAS-LVKYYYRTPRIPRSLLNEY-REGILIGTACDEGELFTAVMQKDQSEVEKIAKFYD 692

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    +  +P++AT N+ +L E D  A 
Sbjct: 693  FIEVQPPALYQDLMDRELIRDNETLTQIYKRLIDAGKSANIPVIATGNAHYLFEHDAIAR 752

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V      +  ++  
Sbjct: 753  KILIASQPGNPL--NRSTLPEAHFRTTDEMLDDFHFLGEEKAYEIVVTNTNELANKIEKV 810

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI  +      D        E+R  + +  +    +         Q    RL+ EL+ I
Sbjct: 811  VPIKDKLFTPRMDG----ANEEIRELSYSNAKKLYGEDL------PQIVIDRLEKELDSI 860

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                FS  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 861  IGNGFSVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCK 919

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 920  TSEFFDDGSVGSGFDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 979

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 980  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGFV-KGYLNDQGIHKRGAE---------- 1028

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1029 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1065

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1066 QFPADDQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1122

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1123 KETMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1182

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I      +  ++     +++Y         + +G   S A 
Sbjct: 1183 G-------TDVWLGNAQELIRQGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1227

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
                 + K      +           +N +      +  ++      Y F K+HAAAY +
Sbjct: 1228 KTMEFVRKGRGLTDEMV-----EAMKENNVPDWYLDSCRKI-----KYMFPKAHAAAYVL 1277

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + AA  T+   + + I                             
Sbjct: 1278 MAVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1337

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      DF +  + +     ++ G+G   A+ I+EA 
Sbjct: 1338 VLTVLEIMNEMAHRGFRLQPISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAQRIVEAR 1397

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             + PF S ED   +     L+++V++ L   G+L      + QL
Sbjct: 1398 EEGPFLSKEDLNKKA---GLSQKVIDYLDELGSLPDL-PDKAQL 1437



 Score = 88.7 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G  +++  +++ A     A+A+TD N + +  +    A   GI+ I 
Sbjct: 340 VEFHLHTSMSQMDGIPNISAYVEQAAKWGHRALAVTDHNVVQAFPDAHNAAEKHGIKMIY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 400 GMEGMLVDDGVPIAYKPTDRNLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 457

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 458 DKFERFSNPHERLSETIINLTHITDDMLTDA------PEIEEVLTEFKEWVGDAIFVA 509


>gi|314936575|ref|ZP_07843922.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            hominis subsp. hominis C80]
 gi|313655194|gb|EFS18939.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            hominis subsp. hominis C80]
          Length = 1438

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 159/928 (17%), Positives = 309/928 (33%), Gaps = 181/928 (19%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTV--PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            +L +    ++      +  +       + L+V   +G + L ++VS   L+    ++ RI
Sbjct: 587  ELGVANHKDINKKLSNEDAYKRARPTHVTLIVQNQDGLKNLFKIVSAS-LVKYYYRTPRI 645

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLY-----V 184
              S L E   EG+++ T    G +  A         EK    +   ++   +LY      
Sbjct: 646  PRSLLNEY-REGILVGTACDEGELFTAVMQRDQSEVEKIAKYYDFIEVQPPKLYQDLIDR 704

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             L R          ++++   +  +P++AT N+ +L E D  A  +L+A      +++  
Sbjct: 705  ELIRDTETLYEIYDRILKAGESTGIPVIATGNAHYLFEHDAIARKILIASQPGNPLNRST 764

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             P        +   E   +  D   A +  V+     +  ++   PI  +      +   
Sbjct: 765  LPEAHFRTTDEMLDEFHFLGEDK--AYDIVVKNTNELADRIEKVIPIKDQLFTPRMEG-- 820

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                 E+R  +    +              Q    RL+ EL+ I    FS  +LI    +
Sbjct: 821  --ANEEIRELSYTNAKKLYGDDL------PQIVIDRLEKELDSIIGNGFSVIYLISQRLV 872

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------- 399
            + +  +   VG  RGS   S  A    IT+++PL                          
Sbjct: 873  KKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPHCKTSEFFDDGSVGSGFDL 931

Query: 400  ----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                              + FE FL      +PD D++F  + +     Y +  +G ++V
Sbjct: 932  PDKTCETCGGELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPHAHNYTKVLFGEDKV 991

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
             +  T G++  K A   V +          R  +                          
Sbjct: 992  FRAGTIGTVAEKTAFGFV-KGYLNDQGIHKRGAE-------------------------- 1024

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRSD---LPVTQF 558
                   +  + +   G+ R    H  GI  V     +    P+             T F
Sbjct: 1025 -------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPADDQSAPWMTTHF 1077

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY--------- 609
            +   I    ++K D LG    T+++   D          + +   +  + +         
Sbjct: 1078 DFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDDKETMQIFSSPASLGVT 1134

Query: 610  --HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
               +L   GT G+ +  +  +RQ LE  +P    +++ +  L                N 
Sbjct: 1135 EEDILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG-------TDVWLGNA 1187

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +E I S    +  ++     +++Y         + +G   S A     ++ K      + 
Sbjct: 1188 QELIRSGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAFKTMESVRKGKGLTDE- 1238

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
                 I+    N +      +  ++      Y F K+HAAAY +++ + A+ K H+P+ +
Sbjct: 1239 ----MINAMKANDVPDWYLDSCLKI-----KYMFPKAHAAAYVLMAVRIAYFKVHHPLYY 1289

Query: 788  LAASMTLEMDNVEKIKKF---------------------------------CQDARQFNI 814
             AA  T+   + + I                                      +      
Sbjct: 1290 YAAYFTIRASDFDLITMIKDKESIKNTVKDMYSRYMDLGKKEKDVLTVLEIMNEMAHRGF 1349

Query: 815  QIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
            ++ P S+      DF + D+ +     A+ G+G   A+ I+EA  D PF S ED   +  
Sbjct: 1350 KMQPISLEKSQAFDFIIEDDTLIPPFIAVPGLGENVAKRIVEAREDGPFLSKEDLNKKA- 1408

Query: 874  SKKLNRRVLESLVFAGALDCFGYSRMQL 901
               L+++++E L   G+L      + QL
Sbjct: 1409 --GLSQKIIEYLDDLGSLPDL-PDKAQL 1433



 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 68/179 (37%), Gaps = 14/179 (7%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +HSS S ++G  +++  +++ AA    AIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHSSMSQMDGIPNISAYVNQAAAWGHKAIAVTDHNVVQAFPDAHSAAEKNGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++       + K    
Sbjct: 396 GMEGMLVDDGVPIAYKPTDRNLKDATYVVFDVET-TGLSNQYDQIIELA--AVKVKDGEI 452

Query: 131 ICL----SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
           I      S   E  +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 453 IDKFERFSNPHEKLSETIINLTHITDDMLVDA------PEIEEVLTEFKEWVGDAIFVA 505


>gi|110801936|ref|YP_698978.1| DNA polymerase III PolC [Clostridium perfringens SM101]
 gi|110682437|gb|ABG85807.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens SM101]
          Length = 1449

 Score =  228 bits (581), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 163/981 (16%), Positives = 309/981 (31%), Gaps = 227/981 (23%)

Query: 55   ALEF-SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP--SIVLLVSTAEGYQR 111
             L+F  +K            ++DI     L            +P   I++L     G + 
Sbjct: 589  ILKFSFKKMKE---------EMDIHDVKTLNEKYLSNIDVKKLPLHHIIILAKNQTGIKN 639

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L +LVS  +L D   +  R+  S + E   EGLI+ +   +G + +A     +    K +
Sbjct: 640  LYKLVSMAHL-DYFARRPRLPKSIITEY-REGLIIGSACEAGQLYKAVLEGKTDGELKEI 697

Query: 172  LTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNS 217
             +F        Y+ +Q  +  +              R    ++  L    + P+VAT + 
Sbjct: 698  ASFYD------YLEIQPIQNNEFLIRKGNVKDEEELRELNRKIYDLGKEMDKPVVATCDC 751

Query: 218  LFLSEEDYEAHDVLMAVA-HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
             FL   D     ++MA   +    +Q      T +  +K    +               E
Sbjct: 752  HFLDPNDEVFRRIIMAGQGYGDADNQPPLYFRTTNEMMKEFEYLGEE---------ACRE 802

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
            +    +  +      +    ++      +  E E+RN  +  +     +         + 
Sbjct: 803  VVIENTQKIADMVEAVKPIPDETFPPKIEGAEEEIRNMTMNKVHSIYGENL------PEV 856

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
             ++RLD ELN I    ++  +LI    +  + ++   VG  RGS   S  A    IT+++
Sbjct: 857  VQKRLDKELNSIINNGYAVLYLIAQKLVAKSLEDGYLVG-SRGSVGSSFVATMSDITEVN 915

Query: 397  ----------------------------PLRFSLLF-------------ERFLNPDRMSM 415
                                        P +                  E FL  +    
Sbjct: 916  GLPPHYVCPNCKKSEFFLDGSISSGADLPDKNCPDCGTKYIKDGHDIPFETFLGFEGDKE 975

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  + +  V +Y +  +G   V +  T G++  K A   V + LQ         
Sbjct: 976  PDIDLNFSGEYQAVVHKYTEVLFGKGYVFKAGTIGTVAEKTAYGFVKKYLQ--------- 1026

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--V 533
                  +    VS   I                     ++    G+ R +  H  GI  V
Sbjct: 1027 ------ERGLVVSQAEIER-------------------LTIGCTGIKRTSGQHPGGIMVV 1061

Query: 534  IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
              D  +    P+         D+  T F+   I    L+K D LG    T+L+   D   
Sbjct: 1062 PNDNEIYNFCPIQHPADDVNTDIITTHFDYHSI-SGRLLKLDILGHDDPTVLRMLQDLTG 1120

Query: 591  QRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
                 + L+        T           L    G+ G+ +  +  +RQ L   QP    
Sbjct: 1121 LDPKTIPLNDPKVISLFTSPDALGVTKEELGCEVGSYGLPEFGTKFVRQMLVDTQPKSFA 1180

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            D++ +  L          V+ N      K       +   +     +++Y         +
Sbjct: 1181 DLVRISGLSH-----GTDVWLNNAQYFIKEGYT--TLKDCIATRDDIMVYL--------M 1225

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                    A  +   + K      + +     +   +  +      +   +      Y F
Sbjct: 1226 YKDLPPKTAFTIMEKVRKGKGLSEEDE-----ALMREKNVPDWYIESCKRI-----KYMF 1275

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------------------- 800
             K HA AY +++ + A+ K +YP  +     T+  D+ +                     
Sbjct: 1276 PKGHAVAYVMMAVRIAYYKVYYPEAYYTTYFTVRADDFDADLICKGEEAIKAKMEELNSL 1335

Query: 801  ------------KIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGT 847
                         I +   +  +  +  +   +       FK+ ++ I   L A++GVG 
Sbjct: 1336 GNNISVKEKGLLTILEISYEMYKRGLNFLKVDLYKSEATKFKIEEDGIRPPLNALQGVGD 1395

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              A+ I+E   +  F S ED   R    K+++ V+E+L   G L+               
Sbjct: 1396 NAAKSIVECRVNGEFISKEDLRIR---SKVSKTVIETLDNHGCLEGM------------- 1439

Query: 908  IQKYAQWVEKNRTNKHENIFA 928
                       + +   ++F 
Sbjct: 1440 -----------QESNQLSLFG 1449



 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 36/86 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++   + + I+++ A     A+AITD   + +  +    A    I+ I 
Sbjct: 350 VELHMHTTMSSMDAVTAASKIVERAAKFGHKAVAITDHGVVQAFPDAQIAAKKNNIKVIY 409

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       + N  +  F    
Sbjct: 410 GVEGYLADNGTPIVINGHEESFDDEY 435


>gi|152976184|ref|YP_001375701.1| DNA polymerase III PolC [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152024936|gb|ABS22706.1| DNA polymerase III, alpha subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 1433

 Score =  228 bits (581), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 157/916 (17%), Positives = 302/916 (32%), Gaps = 173/916 (18%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++ EG + L +L+S  + ++   +  RI  S
Sbjct: 586  FEYHDQLNDSMGQGDSYKRGRPSHVTLLATSDEGLKNLYKLISYSH-VNYFYRVPRIPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK-------KLFGDRLYVNLQ 187
             L++   EG+++ T    G +  A    + +  E+    +        ++    + + L 
Sbjct: 645  LLKK-HREGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYDYIEVMPPEVLRHLVELELV 703

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R  G  +   S +V+L  T + P+VAT N  +L+ ED     +L++              
Sbjct: 704  RDEGQLKTIISNLVKLGETLDKPVVATGNVHYLNPEDAIYRKILISSQGGA-NPLNRHSL 762

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                    +       F    +A E  V   ++ + ++    P+       + +      
Sbjct: 763  PPVYFRTTDEMLDCFSFLGEEKAKEIVVTNTQKIASLIGEVHPVKDDLYTPKIEG----A 818

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            ++E R+ +         +         +    RL+ EL  I    F+  +LI    ++ +
Sbjct: 819  DDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKS 872

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
              +   VG  RGS   S  A  + IT+++PL                             
Sbjct: 873  LIDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGSGFDLPDK 931

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  + +     Y +  +G + V + 
Sbjct: 932  NCPNCNVPYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFGEDYVYRA 991

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V +     ++   R  +                             
Sbjct: 992  GTIGTVAEKTAYGYV-KGYASDHNLTIRNAE----------------------------- 1021

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMK 561
                +  +     G+ R    H  GI+       +    P+     S   +   T F+  
Sbjct: 1022 ----VDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSVGAEWRTTHFDFH 1077

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDHETYHLLT 613
             I    L+K D LG    T+++   D                + +   P     T   + 
Sbjct: 1078 SIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSSPESLGVTEEQIN 1136

Query: 614  TKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
             K    GI +  +  +RQ LE  +P    +++ +  L                N  E I 
Sbjct: 1137 CKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLGNANELIY 1189

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
            +    +  ++     +++Y         +  G   S A  +  ++ K      +     +
Sbjct: 1190 NGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPEE-----W 1236

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
                  N +      +  ++      Y F K+HAAAY +++ + A+ K H+P+ F AA  
Sbjct: 1237 EEEMRNNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFPLLFYAAYF 1291

Query: 793  TLEMDNVE---------KIKKFCQDARQFNIQIMPPS----------------------- 820
            T+  D+ +          I+   ++  Q  +   P                         
Sbjct: 1292 TVRADDFDVDVMAKGSASIRAKIEEIAQKGLDASPKEKSLLTVLEMTLEMCERGYSFQKV 1351

Query: 821  --VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
                +   DF +  + +     A+ G+GT  A  I+EA  +  F S ED   R    KL+
Sbjct: 1352 DLYRSHATDFIIDGDTLIPPFNAVSGLGTNAAISIVEARKNGDFLSKEDLQQR---SKLS 1408

Query: 879  RRVLESLVFAGALDCF 894
            + ++E L   G L   
Sbjct: 1409 KTIIEYLDSQGCLGDL 1424



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S++ ++ +       AIAITD     S  E       AGI+ I 
Sbjct: 332 VELHLHTPMSQMDAVTSVSQLIAQAGKWGHEAIAITDHAVAQSFPEAYSAGKKAGIKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEEHRLLEDETYVVF 421


>gi|329733603|gb|EGG69931.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus 21193]
          Length = 1438

 Score =  228 bits (581), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 160/944 (16%), Positives = 310/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+       L+   + N K++N+          + L+V   +G + L ++
Sbjct: 579  IKMVQQMKELGV-------LN-HNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKI 630

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 631  VSAS-LVKYFYRTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYD 688

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    T  +P++AT N+ +L E D  A 
Sbjct: 689  FIEIQPPALYQDLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIAR 748

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V+     +  ++  
Sbjct: 749  KILIASQPGNPL--NRSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERV 806

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI         +        E+R  + A       +         Q    RL+ EL  I
Sbjct: 807  VPIKDELYTPRMEG----ANEEIRELSYANARKLYGEDL------PQIVIDRLEKELKSI 856

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 857  IGNGFAVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCK 915

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 916  TSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 975

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 976  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYV-KGYLNDQGTHKRGAE---------- 1024

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1025 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1061

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1062 QYPADDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1118

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1119 KEVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1178

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I +    +  ++     +++Y         + +G   S A 
Sbjct: 1179 G-------TDVWLGNAQELIKTGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1223

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +  ++ K      +      I    +N +      +  ++      Y F K+HAAAY +
Sbjct: 1224 KIMESVRKGKGLTEE-----MIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVL 1273

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF-------------------------- 805
            ++ + A+ K H+P+ + A+  T+   + + I                             
Sbjct: 1274 MAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1333

Query: 806  -------CQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA 
Sbjct: 1334 VLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEAR 1393

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1394 DDGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1433



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 396 GMEGMLVDDGVPIAYKPQDVVLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 453

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 454 DKFERFSNPHERLSETIINLTHITDDMLVDA------PEIEEVLTEFKEWVGDAIFVA 505


>gi|169342745|ref|ZP_02863785.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens C str. JGS1495]
 gi|169299251|gb|EDS81321.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens C str. JGS1495]
          Length = 1449

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 165/981 (16%), Positives = 310/981 (31%), Gaps = 227/981 (23%)

Query: 55   ALEF-SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP--SIVLLVSTAEGYQR 111
             L+F  +K            ++DI     L            +P   I++L     G + 
Sbjct: 589  ILKFSFKKMKE---------EMDIHDVKTLNEKYLSNIDVKKLPLHHIIILAKNQTGIKN 639

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L +LVS  +L D   +  R+  S + E   EGLI+ +   +G + +A     +    K +
Sbjct: 640  LYKLVSMAHL-DYFARRPRLPKSIITEY-REGLIIGSACEAGQLYKAVLEGKTDGELKEI 697

Query: 172  LTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNS 217
             +F        Y+ +Q  +  +              R    ++  L    + P+VAT + 
Sbjct: 698  ASFYD------YLEIQPIQNNEFLIRKGNVKDEEELRELNRKIYDLGKEMDKPVVATCDC 751

Query: 218  LFLSEEDYEAHDVLMAVA-HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
             FL   D     ++MA   +    +Q      T +  +K    +               E
Sbjct: 752  HFLDPNDEVFRRIIMAGQGYGDADNQPPLYFRTTNEMMKEFEYLGEE---------ACRE 802

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
            +    +  +      +    ++      +  E E+RN  +  +     +         + 
Sbjct: 803  VVIENTQKIADMVEAVKPIPDETFPPKIEGAEEEIRNMTMNKVHSIYGENL------PEV 856

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
             ++RLD ELN I    ++  +LI    +  + ++   VG  RGS   S  A    IT+++
Sbjct: 857  VQKRLDKELNSIINNGYAVLYLIAQKLVAKSLEDGYLVG-SRGSVGSSFVATMSDITEVN 915

Query: 397  PLR-----------------------------------------FSLLFERFLNPDRMSM 415
             L                                            + FE FL  +    
Sbjct: 916  GLPPHYVCPNCKKSEFFLDGSISSGADLPDKNCPECGTKYIKDGHDIPFETFLGFEGDKE 975

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  + +  V +Y +  +G   V +  T G++  K A   V + LQ         
Sbjct: 976  PDIDLNFSGEYQAVVHKYTEVLFGKGYVFKAGTIGTVAEKTAYGFVKKYLQ--------- 1026

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--V 533
                  +    VS   I                     ++    G+ R +  H  GI  V
Sbjct: 1027 ------ERGLVVSQAEIER-------------------LTIGCTGIKRTSGQHPGGIMVV 1061

Query: 534  IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
              D  +    P+         D+  T F+   I    L+K D LG    T+L+   D   
Sbjct: 1062 PNDNEIYNFCPIQHPADDVNTDIITTHFDYHSI-SGRLLKLDILGHDDPTVLRMLQDLTG 1120

Query: 591  QRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
                 + L+        T           L    G+ G+ +  +  +RQ L   QP    
Sbjct: 1121 LDPKTIPLNDPKVISLFTSPDALGVTKEELGCEVGSYGLPEFGTKFVRQMLVDTQPKSFA 1180

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            D++ +  L          V+ N      K       +   +     +++Y         +
Sbjct: 1181 DLVRISGLSH-----GTDVWLNNAQYFIKEGYT--TLKDCIATRDDIMVYL--------M 1225

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                    A  +   + K      D +     +   +  +      +   +      Y F
Sbjct: 1226 YKDLPPKTAFTIMEKVRKGKGLSEDDE-----ALMREKNVPDWYIESCKRI-----KYMF 1275

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------------------- 800
             K HA AY +++ + A+ K +YP  +     T+  D+ +                     
Sbjct: 1276 PKGHAVAYVMMAVRIAYYKVYYPEAYYTTYFTVRADDFDADLICKGEEAIKAKMEELNSL 1335

Query: 801  ------------KIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGT 847
                         I +   +  +  +  +   +       FK+ ++ I   L A++GVG 
Sbjct: 1336 GNNISVKEKGLLTILEISYEMYKRGLNFLKVDLYKSEATKFKIEEDGIRPPLNALQGVGD 1395

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              A+ I+E   +  F S ED   R    K+++ V+E+L   G L+               
Sbjct: 1396 NAAKSIVECRVNGEFISKEDLRIR---SKVSKTVIETLDNHGCLEGM------------- 1439

Query: 908  IQKYAQWVEKNRTNKHENIFA 928
                       + +   ++F 
Sbjct: 1440 -----------QESNQLSLFG 1449



 Score = 85.2 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 36/86 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++   + + I+++ A     A+AITD   + +  +    A    I+ I 
Sbjct: 350 VELHMHTTMSSMDAVTAASKIVERAAKFGHKAVAITDHGVVQAFPDAQIAAKKNNIKVIY 409

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       + +  +  F    
Sbjct: 410 GVEGYLADNGTPIVISGHEESFDDEY 435


>gi|254519189|ref|ZP_05131245.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA]
 gi|226912938|gb|EEH98139.1| DNA polymerase III polC-type [Clostridium sp. 7_2_43FAA]
          Length = 1442

 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 161/929 (17%), Positives = 303/929 (32%), Gaps = 191/929 (20%)

Query: 74   QLDID--MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            +L+++     N +   +          I++   T  G + L +LVS  ++ D   +S R+
Sbjct: 594  ELNMNSLNDLNKEFLEKMDIKKEKTYHIIIFAKTQAGMKNLYKLVSEAHI-DNFHKSPRV 652

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L E+  +GLI+ +   +G + RA     S          K++ G   Y+ +Q    
Sbjct: 653  RKSKLMEM-RDGLIIGSACEAGEVYRAVLDGKSDE------ELKEIMGFYDYLEIQPIGN 705

Query: 192  YD--------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
             +              R   +++  L      P+VAT +  FL  +D     ++MA    
Sbjct: 706  NEYLINKGNVKDEDELRSLNTKIYNLGKELNKPVVATGDVHFLDPQDEVFRKIIMAGQ-- 763

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                     +                +     A E  +      +  + V  PI      
Sbjct: 764  --GFSDSENQPPLYLKTTEEMLREFSYLGQDGAKEVVIINPGEIADSIDVLKPIPDETYP 821

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E+R   +  +               +  ++RLD ELN I    ++  +
Sbjct: 822  PKIEG----ADDEIREMTMEKVHSIYGDPL------PEIVQKRLDKELNSIINNGYAVLY 871

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    +  +  +   VG  RGS   S  A    IT+++ L                   
Sbjct: 872  LIAQKLVAKSLADGYLVG-SRGSVGSSFVATMSNITEVNGLPPHYVCPNCKNSEFFLDGS 930

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL  +    PD D++F  D + E+ +Y + 
Sbjct: 931  VSSGADLEDKDCPKCGAKYIKDGHDIPFETFLGFEGDKEPDIDLNFSGDNQGEIHKYTEV 990

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G   V +  T G++  K A   V + L                +     S   I    
Sbjct: 991  LFGKGYVFKAGTIGTVAEKTAYGYVRKYLD---------------ERGLRASSAEIER-- 1033

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYR---DVRS 551
                             ++    G+ R    H  GI  V  D  +    P+ R   D  S
Sbjct: 1034 -----------------LTIGCTGIKRTTGQHPGGIMVVPSDNEIYNFTPIQRPADDPTS 1076

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY-- 609
            D+  T F+   I    L+K D LG    T+++   D        + L+        T   
Sbjct: 1077 DVTTTHFDYHSI-SGRLLKLDILGHDDPTMIRMLQDLTGVDPKTIPLNDKKVISLFTSPE 1135

Query: 610  -------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
                    L    G+ G+ +  +  +R  L   QP    D++ +  L          V+ 
Sbjct: 1136 ALGVTKDELGCEVGSYGLPEFGTKFVRGMLVDTQPKSFADLVRISGLSH-----GTDVWL 1190

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            N      K       +   +     +++Y         + +G     A  +  ++ K   
Sbjct: 1191 NNAQYFIKEGYT--TLKDCISTRDDIMVYL--------MYAGVPPKMAFTIMESVRKGKG 1240

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
               +     F     +N +      +   +      Y F K HA AY +++ + A+ K +
Sbjct: 1241 LTEE-----FEKTMKENNVPDWYIESCKRI-----KYMFPKGHAVAYVMMAVRIAYFKVY 1290

Query: 783  YPVEFLAASMTLEMDNVE---------------------------------KIKKFCQDA 809
            YP  + A   T+  D+ +                                  + +   + 
Sbjct: 1291 YPEAYYATYFTVRADDFDADLICKGPGAIKAKLDELYELGNKVTAKDKGLITVLELSYEL 1350

Query: 810  RQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
                ++ +   +       F + ++ I   ++A++GVG   A+ I+EA  +  F S ED 
Sbjct: 1351 YARGLKFLKVDLYISEATRFTIEEDGIRPPISALQGVGDNAAKSIVEARKEGEFISKEDL 1410

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFGYS 897
              R    K+++ V+E+L   G L+    +
Sbjct: 1411 RVR---SKVSKTVIETLSNHGCLEGMSET 1436



 Score = 90.2 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 34/86 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++G +S   I+++ A     AIAITD   + +  +    A    I+ + 
Sbjct: 344 VELHCHTTMSAMDGVVSATKIIERAAKWGHKAIAITDHGVVQAFPDAQIAAKKNKIKVLY 403

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +         N     F    
Sbjct: 404 GVEGYLVNDGIPIALNDMGQSFDDTF 429


>gi|319401446|gb|EFV89656.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            epidermidis FRI909]
          Length = 1438

 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 160/944 (16%), Positives = 308/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+        +  ++ N K+TN+          + L+V   EG + L ++
Sbjct: 579  IKMVQQMKELGV--------NNHLEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKI 630

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EG+++ T    G +  A         EK    + 
Sbjct: 631  VSAS-LVKYYYRTPRIPRSLLNEY-REGILIGTACDEGELFTAVMQKDQSEVEKIAKFYD 688

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    +  +P++AT N+ +L E D  A 
Sbjct: 689  FIEVQPPALYQDLMDRELIRDNETLTQIYKRLIDAGKSANIPVIATGNAHYLFEHDAIAR 748

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V      +  ++  
Sbjct: 749  KILIASQPGNPL--NRSTLPEAHFRTTDEMLDDFHFLGEEKAYEIVVTNTNELADKIEKV 806

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI  +      D        E+R  + +  +    +         Q    RL+ EL+ I
Sbjct: 807  VPIKDKLFTPRMDG----ANEEIRELSYSNAKKLYGEDL------PQIVIDRLEKELDSI 856

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                FS  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 857  IGNGFSVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCK 915

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 916  TSEFFDDGSVGSGFDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 975

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 976  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGFV-KGYLNDQGIHKRGAE---------- 1024

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1025 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1061

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1062 QFPADDQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1118

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1119 KETMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1178

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I      +  ++     +++Y         + +G   S A 
Sbjct: 1179 G-------TDVWLGNAQELIRQGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1223

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
                 + K      +           +N +      +  ++      Y F K+HAAAY +
Sbjct: 1224 KTMEFVRKGRGLTDEMV-----EAMKENNVPDWYLDSCRKI-----KYMFPKAHAAAYVL 1273

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + AA  T+   + + I                             
Sbjct: 1274 MAVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1333

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      DF +  + +     ++ G+G   A+ I+EA 
Sbjct: 1334 VLTVLEIMNEMAHRGFRLQPISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAQRIVEAR 1393

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             + PF S ED   +     L+++V++ L   G+L      + QL
Sbjct: 1394 EEGPFLSKEDLNKKA---GLSQKVIDYLDELGSLPDL-PDKAQL 1433



 Score = 88.7 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G  +++  +++ A     A+A+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTSMSQMDGIPNISAYVEQAAKWGHRALAVTDHNVVQAFPDAHNAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 396 GMEGMLVDDGVPIAYKPTDRNLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 453

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 454 DKFERFSNPHERLSETIINLTHITDDMLTDA------PEIEEVLTEFKEWVGDAIFVA 505


>gi|320140919|gb|EFW32766.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus MRSA131]
          Length = 1436

 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 160/944 (16%), Positives = 310/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+       L+   + N K++N+          + L+V   +G + L ++
Sbjct: 577  IKMVQQMKELGV-------LN-HNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKI 628

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 629  VSAS-LVKYFYRTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYD 686

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    T  +P++AT N+ +L E D  A 
Sbjct: 687  FIEIQPPALYQDLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIAR 746

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V+     +  ++  
Sbjct: 747  KILIASQPGNPL--NRSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERV 804

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI         +        E+R  + A       +         Q    RL+ EL  I
Sbjct: 805  VPIKDELYTPRMEG----ANEEIRELSYANARKLYGEDL------PQIVIDRLEKELKSI 854

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 855  IGNGFAVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCK 913

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 914  TSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 973

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 974  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYV-KGYLNDQGIHKRGAE---------- 1022

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1023 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1059

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1060 QYPADDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1116

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1117 KEVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1176

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I +    +  ++     +++Y         + +G   S A 
Sbjct: 1177 G-------TDVWLGNAQELIKTGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1221

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +  ++ K      +      I    +N +      +  ++      Y F K+HAAAY +
Sbjct: 1222 KIMESVRKGKGLTEE-----MIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVL 1271

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + A+  T+   + + I                             
Sbjct: 1272 MAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1331

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA 
Sbjct: 1332 VLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEAR 1391

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1392 DDGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1431



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 334 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 394 GMEGMLVDDGVPIAYKPQDVVLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 451

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 452 DKFERFSNPHERLSETIINLTHITDDMLVDA------PEIEEVLTEFKEWVGDAIFVA 503


>gi|283470479|emb|CAQ49690.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus ST398]
          Length = 1438

 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 160/944 (16%), Positives = 309/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+       L+   + N K++N+          + L+V   +G + L ++
Sbjct: 579  IKMVQQMKELGV-------LN-HNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKI 630

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 631  VSAS-LVKYFYRTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYD 688

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    T  +P++AT N+ +L E D  A 
Sbjct: 689  FIEIQPPALYQDLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIAR 748

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V+     +  ++  
Sbjct: 749  KILIASQPGNPL--NRSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERV 806

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI         +        E+R  + A       +         Q    RL+ EL  I
Sbjct: 807  VPIKDELYTPRMEG----ANEEIRELSYANARKLYGEDL------PQIVIDRLEKELKSI 856

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 857  IGNGFAVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCK 915

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 916  TSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 975

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 976  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYV-KGYLNDQGIHKRGAE---------- 1024

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1025 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1061

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1062 QYPADDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1118

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1119 KQVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1178

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I +    +  ++     +++Y         + +G   S A 
Sbjct: 1179 G-------TDVWLGNAQELIKTGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1223

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +  ++ K      +      I    +N +      +  ++      Y F K+HAAAY +
Sbjct: 1224 KIMESVRKGKGLTEE-----MIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVL 1273

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + A+  T+   + + I                             
Sbjct: 1274 MAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1333

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA 
Sbjct: 1334 VLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEAR 1393

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1394 DDGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1433



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 396 GMEGMLVDDGVPIAYKPQDVVLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 453

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 454 DKFERFSNPHERLSETIINLTHITDDMLVDA------PEIEEVLTEFKEWVGDAIFVA 505


>gi|253731883|ref|ZP_04866048.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
            USA300_TCH959]
 gi|253724293|gb|EES93022.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
            USA300_TCH959]
 gi|320144365|gb|EFW36131.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus MRSA177]
          Length = 1442

 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 160/944 (16%), Positives = 310/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+       L+   + N K++N+          + L+V   +G + L ++
Sbjct: 583  IKMVQQMKELGV-------LN-HNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKI 634

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 635  VSAS-LVKYFYRTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYD 692

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    T  +P++AT N+ +L E D  A 
Sbjct: 693  FIEIQPPALYQDLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIAR 752

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V+     +  ++  
Sbjct: 753  KILIASQPGNPL--NRSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERV 810

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI         +        E+R  + A       +         Q    RL+ EL  I
Sbjct: 811  VPIKDELYTPRMEG----ANEEIRELSYANARKLYGEDL------PQIVIDRLEKELKSI 860

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 861  IGNGFAVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCK 919

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 920  TSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 979

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 980  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYV-KGYLNDQGIHKRGAE---------- 1028

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1029 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1065

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1066 QYPADDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1122

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1123 KEVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1182

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I +    +  ++     +++Y         + +G   S A 
Sbjct: 1183 G-------TDVWLGNAQELIKTGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1227

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +  ++ K      +      I    +N +      +  ++      Y F K+HAAAY +
Sbjct: 1228 KIMESVRKGKGLTEE-----MIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVL 1277

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + A+  T+   + + I                             
Sbjct: 1278 MAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1337

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA 
Sbjct: 1338 VLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEAR 1397

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1398 DDGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1437



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 340 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 400 GMEGMLVDDGVPIAYKPQDVVLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 457

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 458 DKFERFSNPHERLSETIINLTHITDDMLVDA------PEIEEVLTEFKEWVGDAIFVA 509


>gi|57651834|ref|YP_186140.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus COL]
 gi|87161645|ref|YP_493854.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
            USA300_FPR3757]
 gi|88194974|ref|YP_499774.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus NCTC
            8325]
 gi|161509430|ref|YP_001575089.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
            USA300_TCH1516]
 gi|294848260|ref|ZP_06789007.1| DNA polymerase III [Staphylococcus aureus A9754]
 gi|56749834|sp|P68852|DPO3_STAAW RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|110808208|sp|Q2G1Z8|DPO3_STAA8 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|123486180|sp|Q2FHH4|DPO3_STAA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|12082347|dbj|BAB20885.1| PolC [Staphylococcus aureus]
 gi|57286020|gb|AAW38114.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus COL]
 gi|87127619|gb|ABD22133.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus USA300_FPR3757]
 gi|87202532|gb|ABD30342.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus NCTC 8325]
 gi|160368239|gb|ABX29210.1| DNA-directed DNA polymerase III alpha subunit [Staphylococcus aureus
            subsp. aureus USA300_TCH1516]
 gi|294825060|gb|EFG41482.1| DNA polymerase III [Staphylococcus aureus A9754]
          Length = 1436

 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 160/944 (16%), Positives = 310/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+       L+   + N K++N+          + L+V   +G + L ++
Sbjct: 577  IKMVQQMKELGV-------LN-HNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKI 628

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 629  VSAS-LVKYFYRTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYD 686

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    T  +P++AT N+ +L E D  A 
Sbjct: 687  FIEIQPPALYQDLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIAR 746

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V+     +  ++  
Sbjct: 747  KILIASQPGNPL--NRSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERV 804

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI         +        E+R  + A       +         Q    RL+ EL  I
Sbjct: 805  VPIKDELYTPRMEG----ANEEIRELSYANARKLYGEDL------PQIVIDRLEKELKSI 854

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 855  IGNGFAVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCK 913

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 914  TSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 973

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 974  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYV-KGYLNDQGIHKRGAE---------- 1022

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1023 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1059

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1060 QYPADDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1116

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1117 KEVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1176

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I +    +  ++     +++Y         + +G   S A 
Sbjct: 1177 G-------TDVWLGNAQELIKTGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1221

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +  ++ K      +      I    +N +      +  ++      Y F K+HAAAY +
Sbjct: 1222 KIMESVRKGKGLTEE-----MIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVL 1271

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + A+  T+   + + I                             
Sbjct: 1272 MAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1331

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA 
Sbjct: 1332 VLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEAR 1391

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1392 DDGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1431



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 334 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 394 GMEGMLVDDGVPIAYKPQDVVLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 451

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 452 DKFERFSNPHERLSETIINLTHITDDMLVDA------PEIEEVLTEFKEWVGDAIFVA 503


>gi|269940755|emb|CBI49137.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
            TW20]
          Length = 1438

 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 160/944 (16%), Positives = 310/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+       L+   + N K++N+          + L+V   +G + L ++
Sbjct: 579  IKMVQQMKELGV-------LN-HNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKI 630

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 631  VSAS-LVKYFYRTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYD 688

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    T  +P++AT N+ +L E D  A 
Sbjct: 689  FIEIQPPALYQDLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIAR 748

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V+     +  ++  
Sbjct: 749  KILIASQPGNPL--NRSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERV 806

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI         +        E+R  + A       +         Q    RL+ EL  I
Sbjct: 807  VPIKDELYTPRMEG----ANEEIRELSYANARKLYGEDL------PQIVIDRLEKELKSI 856

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 857  IGNGFAVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCK 915

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 916  TSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 975

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 976  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYV-KGYLNDQGIHKRGAE---------- 1024

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1025 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1061

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1062 QYPADDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1118

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1119 KEVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1178

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I +    +  ++     +++Y         + +G   S A 
Sbjct: 1179 G-------TDVWLGNAQELIKTGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1223

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +  ++ K      +      I    +N +      +  ++      Y F K+HAAAY +
Sbjct: 1224 KIMESVRKGKGLTEE-----MIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVL 1273

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + A+  T+   + + I                             
Sbjct: 1274 MAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1333

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA 
Sbjct: 1334 VLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEAR 1393

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1394 DDGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1433



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 396 GMEGMLVDDGVPIAYKPQDVVLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 453

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 454 DKFERFSNPHERLSETIINLTHITDDMLVDA------PEIEEVLTEFKEWVGDAIFVA 505


>gi|168187912|ref|ZP_02622547.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum C str. Eklund]
 gi|169294244|gb|EDS76377.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum C str. Eklund]
          Length = 1441

 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 158/926 (17%), Positives = 301/926 (32%), Gaps = 190/926 (20%)

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             ++      N K              +++L     G + L +L+S   L D   +  R+ 
Sbjct: 593  MEITSLNDLNNKFLGNIDVKKLPTYHLIILAKNQVGLKNLYKLISFSNL-DYFYKKPRMP 651

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR---- 188
             S +++   EGLI+ +   +G + +A      +   K L+ F        Y+ +Q     
Sbjct: 652  KSLIEQY-KEGLIIGSACEAGEVYKAVLEGKIEDELKELIKFYN------YLEIQPIMNN 704

Query: 189  ----------HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
                      +    +    ++ +L   ++LP+VAT +  FL  +D +  ++LM      
Sbjct: 705  EFMLRKGIVKNEDQLKEINRKIYELGVNNDLPVVATGDVHFLDFKDVKFREILMTGQ--- 761

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                    +        +       +     A E  +   ++ +  ++   PI       
Sbjct: 762  -GFSDAANQPPLYLKTTSEMLKEFEYLGEDIAKEVVIYNPQKIANEVEFVKPIPDETFPP 820

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            + D      E ++RN  +           I      +    RL+ ELN I    ++  +L
Sbjct: 821  KIDG----AEEDIRNMTLEKAY------TIYGNPLPKVVHDRLEKELNSIINNGYAVLYL 870

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
            I    +  + ++   VG  RGS   S+ A    IT+++ L                    
Sbjct: 871  IAHKLVAKSLEDGYLVG-SRGSVGSSLVATMSDITEVNGLPPHYVCPNCKNSEFFTDGSV 929

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  +    PD D++F  D + ++ +Y +  
Sbjct: 930  SSGADLPPKKCPKCGTEYNRNGHDIPFETFLGFNGDKEPDIDLNFSGDNQGDIHKYTEVL 989

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G     +  T G++  K A   V + L                +    VS   I     
Sbjct: 990  FGKGHTFKAGTIGTIADKTAYGFVKKYLD---------------EKNMVVSQAEIER--- 1031

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYR---DVRSD 552
                            ++Q   G+ R +  H  GI  V  D  +    P+     D  S+
Sbjct: 1032 ----------------LTQGCTGVKRTSGQHPGGIMVVPSDNEIYNFCPIQHPADDSNSE 1075

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---- 608
            +  T F+   I    L+K D LG    T+L+   D      +K+ +         T    
Sbjct: 1076 IITTHFDYHSI-SGRLLKLDILGHDDPTVLRMLKDITGLDPIKIPIGDEKVLSLFTSPEA 1134

Query: 609  -----YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
                   L    G  GI +  +  +RQ L   QP    D++ +  L          V+ N
Sbjct: 1135 LGVTEEELECPVGCYGIPEFGTKFVRQMLVDTQPKTFSDLVRISGLSH-----GTDVWLN 1189

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
                  K       +   +     +++Y         L       +A  +   + K    
Sbjct: 1190 NAQYFIKEGYT--TLKDCIATRDDIMVYL--------LHKDLEPKDAFTIMEKVRKGKGL 1239

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
              +       +   ++ +      +  ++      Y F K HA AY +++ + A+ K +Y
Sbjct: 1240 SEE-----HEALMREHKVPDWYIESCKKI-----KYMFPKGHAVAYVMMAVRIAYYKVYY 1289

Query: 784  PVEFLAASMTLE-----------------MDNVEKIKKFCQ-----------------DA 809
            P  + A   T+                     +++I                      + 
Sbjct: 1290 PQAYYATYFTVRGIDDFDADLIVRGEDVIKRKMDEINSLGNSATQKDKGLLTNLELAFEM 1349

Query: 810  RQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
             + NI+ +   +       F +  + I   + ++ GVG   A+ I EA  +  F S ED 
Sbjct: 1350 YKRNIKFLKVDIYKSHPTKFLIEGDYIRLPIGSLSGVGLNAAKSIAEARKEGEFISKEDL 1409

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCF 894
              R    K+++ V+E+L   G L+  
Sbjct: 1410 RKR---SKVSKTVIEALSEHGCLEGL 1432



 Score = 98.3 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 35/86 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++G  S  +++++ A    PA+AITD   + +  E    A    I+ I 
Sbjct: 343 VELHMHTQMSAMDGLSSATSLIERAAKWGHPAVAITDHGVVQAFPEAMDAAKKFNIKVIY 402

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +        TN          
Sbjct: 403 GVEAYLVNDGIPIATNVENQNIDDTF 428


>gi|168208108|ref|ZP_02634113.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens E str. JGS1987]
 gi|170660599|gb|EDT13282.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens E str. JGS1987]
          Length = 1449

 Score =  228 bits (580), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 165/981 (16%), Positives = 310/981 (31%), Gaps = 227/981 (23%)

Query: 55   ALEF-SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP--SIVLLVSTAEGYQR 111
             L+F  +K            ++DI     L            +P   I++L     G + 
Sbjct: 589  ILKFSFKKMKE---------EMDIHDVKTLNEKYLSNIDVKKLPLHHIIILAKNQTGIKN 639

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L +LVS  +L D   +  R+  S + E   EGLI+ +   +G + +A     +    K +
Sbjct: 640  LYKLVSMAHL-DYFARRPRLPKSIITEY-REGLIIGSACEAGQLYKAVLEGKTDGELKEI 697

Query: 172  LTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNS 217
             +F        Y+ +Q  +  +              R    ++  L    + P+VAT + 
Sbjct: 698  ASFYD------YLEIQPIQNNEFLIRKGNVKDEDELRELNRKIYDLGKEMDKPVVATCDC 751

Query: 218  LFLSEEDYEAHDVLMAVA-HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
             FL   D     ++MA   +    +Q      T +  +K    +               E
Sbjct: 752  HFLDPNDEVFRRIIMAGQGYGDADNQPPLYFRTTNEMMKEFEYLGEE---------ACRE 802

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
            +    +  +      +    ++      +  E E+RN  +  +     +         + 
Sbjct: 803  VVIENTQKIADMVEAVKPIPDETFPPKIEGAEEEIRNMTMNKVHSIYGENL------PEV 856

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
             ++RLD ELN I    ++  +LI    +  + ++   VG  RGS   S  A    IT+++
Sbjct: 857  VQKRLDKELNSIINNGYAVLYLIAQKLVAKSLEDGYLVG-SRGSVGSSFVATMSDITEVN 915

Query: 397  PLR-----------------------------------------FSLLFERFLNPDRMSM 415
             L                                            + FE FL  +    
Sbjct: 916  GLPPHYVCPNCKKSEFFLDGSISSGADLPDKNCPECGTKYIKDGHDIPFETFLGFEGDKE 975

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  + +  V +Y +  +G   V +  T G++  K A   V + LQ         
Sbjct: 976  PDIDLNFSGEYQAVVHKYTEVLFGKGYVFKAGTIGTVAEKTAYGFVKKYLQ--------- 1026

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--V 533
                  +    VS   I                     ++    G+ R +  H  GI  V
Sbjct: 1027 ------ERGLVVSQAEIER-------------------LTIGCTGIKRTSGQHPGGIMVV 1061

Query: 534  IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
              D  +    P+         D+  T F+   I    L+K D LG    T+L+   D   
Sbjct: 1062 PNDNEIYNFCPIQHPADDVNTDIITTHFDYHSI-SGRLLKLDILGHDDPTVLRMLQDLTG 1120

Query: 591  QRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
                 + L+        T           L    G+ G+ +  +  +RQ L   QP    
Sbjct: 1121 LDPKTIPLNDPKVISLFTSPDALGVTKEELGCEVGSYGLPEFGTKFVRQMLVDTQPKSFA 1180

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            D++ +  L          V+ N      K       +   +     +++Y         +
Sbjct: 1181 DLVRISGLSH-----GTDVWLNNAQYFIKEGYT--TLKDCIATRDDIMVYL--------M 1225

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                    A  +   + K      D +     +   +  +      +   +      Y F
Sbjct: 1226 YKDLPPKTAFTIMEKVRKGKGLSEDDE-----ALMREKNVPDWYIESCKRI-----KYMF 1275

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------------------- 800
             K HA AY +++ + A+ K +YP  +     T+  D+ +                     
Sbjct: 1276 PKGHAVAYVMMAVRIAYYKVYYPEAYYTTYFTVRADDFDADLICKGEEAIKAKMEELNSL 1335

Query: 801  ------------KIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGT 847
                         I +   +  +  +  +   +       FK+ ++ I   L A++GVG 
Sbjct: 1336 GNNISVKEKGLLTILEISYEMYKRGLNFLKVDLYKSEATKFKIEEDGIRPPLNALQGVGD 1395

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              A+ I+E   +  F S ED   R    K+++ V+E+L   G L+               
Sbjct: 1396 NAAKSIVECRINGEFISKEDLRIR---SKVSKTVIETLDNHGCLEGM------------- 1439

Query: 908  IQKYAQWVEKNRTNKHENIFA 928
                       + +   ++F 
Sbjct: 1440 -----------QESNQLSLFG 1449



 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 36/86 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++   + + I+++ A     A+AITD   + +  +    A    I+ I 
Sbjct: 350 VELHMHTTMSSMDAVTAASKIVERAAKFGHKAVAITDHGVVQAFPDAQIAAKKNNIKVIY 409

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       + N  +  F    
Sbjct: 410 GVEGYLADNGTPIVINGHEESFDDEY 435


>gi|21282876|ref|NP_645964.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MW2]
 gi|49486103|ref|YP_043324.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MSSA476]
 gi|151221386|ref|YP_001332208.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
            Newman]
 gi|221142498|ref|ZP_03566991.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
            JKD6009]
 gi|258452563|ref|ZP_05700569.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A5948]
 gi|262048156|ref|ZP_06021043.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus D30]
 gi|262051326|ref|ZP_06023549.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
            930918-3]
 gi|282920508|ref|ZP_06328229.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus A9765]
 gi|284024257|ref|ZP_06378655.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus 132]
 gi|297208090|ref|ZP_06924521.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
            51811]
 gi|300912171|ref|ZP_07129614.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381172|ref|ZP_07363825.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
            BAA-39]
 gi|56748669|sp|Q6G9U9|DPO3_STAAS RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|73919251|sp|Q5HGG7|DPO3_STAAC RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|172049022|sp|A6QGG4|DPO3_STAAE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|21204315|dbj|BAB95012.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
            subsp. aureus MW2]
 gi|49244546|emb|CAG42975.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
            MSSA476]
 gi|150374186|dbj|BAF67446.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
            subsp. aureus str. Newman]
 gi|257859781|gb|EEV82623.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A5948]
 gi|259160701|gb|EEW45722.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
            930918-3]
 gi|259163722|gb|EEW48277.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus D30]
 gi|282594170|gb|EFB99157.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus A9765]
 gi|296887333|gb|EFH26235.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
            51811]
 gi|300886417|gb|EFK81619.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH70]
 gi|302751087|gb|ADL65264.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus str. JKD6008]
 gi|304340155|gb|EFM06096.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ATCC
            BAA-39]
 gi|315198506|gb|EFU28835.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS01]
 gi|329313934|gb|AEB88347.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus T0131]
 gi|329727848|gb|EGG64299.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus 21189]
          Length = 1438

 Score =  228 bits (580), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 160/944 (16%), Positives = 310/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+       L+   + N K++N+          + L+V   +G + L ++
Sbjct: 579  IKMVQQMKELGV-------LN-HNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKI 630

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 631  VSAS-LVKYFYRTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYD 688

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    T  +P++AT N+ +L E D  A 
Sbjct: 689  FIEIQPPALYQDLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIAR 748

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V+     +  ++  
Sbjct: 749  KILIASQPGNPL--NRSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERV 806

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI         +        E+R  + A       +         Q    RL+ EL  I
Sbjct: 807  VPIKDELYTPRMEG----ANEEIRELSYANARKLYGEDL------PQIVIDRLEKELKSI 856

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 857  IGNGFAVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCK 915

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 916  TSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 975

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 976  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYV-KGYLNDQGIHKRGAE---------- 1024

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1025 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1061

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1062 QYPADDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1118

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1119 KEVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1178

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I +    +  ++     +++Y         + +G   S A 
Sbjct: 1179 G-------TDVWLGNAQELIKTGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1223

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +  ++ K      +      I    +N +      +  ++      Y F K+HAAAY +
Sbjct: 1224 KIMESVRKGKGLTEE-----MIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVL 1273

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + A+  T+   + + I                             
Sbjct: 1274 MAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1333

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA 
Sbjct: 1334 VLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEAR 1393

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1394 DDGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1433



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 396 GMEGMLVDDGVPIAYKPQDVVLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 453

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 454 DKFERFSNPHERLSETIINLTHITDDMLVDA------PEIEEVLTEFKEWVGDAIFVA 505


>gi|82750865|ref|YP_416606.1| DNA polymerase III PolC [Staphylococcus aureus RF122]
 gi|123549060|sp|Q2YXK4|DPO3_STAAB RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|82656396|emb|CAI80815.1| DNA polymerase III [Staphylococcus aureus RF122]
          Length = 1438

 Score =  228 bits (580), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 161/944 (17%), Positives = 310/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+       L+   + N K++NQ          + L+V   +G + L ++
Sbjct: 579  IKMVQQMKELGV-------LN-HNEINKKLSNQDAYKRARPSHVTLIVQNQQGLKNLFKI 630

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 631  VSAS-LVKYFYRTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYD 688

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    T  +P++AT N+ +L E D  A 
Sbjct: 689  FIEIQPPALYQDLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIAR 748

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V+     +  ++  
Sbjct: 749  KILIASQPGNPL--NRSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERV 806

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI         +        E+R  + A       +         Q    RL+ EL  I
Sbjct: 807  VPIKDELYTPRMEG----ANEEIRELSYANARKLYGEDL------PQIVIDRLEKELKSI 856

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 857  IGNGFAVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCK 915

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 916  TSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 975

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 976  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYV-KGYLNDQGIHKRGAE---------- 1024

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1025 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1061

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1062 QYPADDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1118

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1119 KEVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1178

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I +    +  ++     +++Y         + +G   S A 
Sbjct: 1179 G-------TDVWLGNAQELIKTGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1223

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +  ++ K      +      I    +N +      +  ++      Y F K+HAAAY +
Sbjct: 1224 KIMESVRKGKGLTEE-----MIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVL 1273

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + A+  T+   + + I                             
Sbjct: 1274 MAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1333

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA 
Sbjct: 1334 VLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEAR 1393

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1394 DDGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1433



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 396 GMEGMLVDDGAPIAYKPQDVVLKDATYVVFDVET-TGLSNQYNKIIELAAVKVH-NGEII 453

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 454 DKFERFSNPHERLSETIINLTHITDDMLVDA------PEIEEVLTEFKEWVGDAIFVA 505


>gi|258423895|ref|ZP_05686780.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus A9635]
 gi|257845924|gb|EEV69953.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus A9635]
          Length = 1438

 Score =  227 bits (579), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 160/944 (16%), Positives = 310/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+       L+   + N K++N+          + L+V   +G + L ++
Sbjct: 579  IKMVQQMKELGV-------LN-HNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKI 630

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 631  VSAS-LVKYFYRTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYD 688

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    T  +P++AT N+ +L E D  A 
Sbjct: 689  FIEIQPPALYQDLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIAR 748

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V+     +  ++  
Sbjct: 749  KILIASQPGNPL--NRSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERV 806

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI         +        E+R  + A       +         Q    RL+ EL  I
Sbjct: 807  VPIKDELYTPRMEG----ANEEIRELSYANARKLYGEDL------PQIVIDRLEKELKSI 856

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 857  IGNGFAVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCK 915

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 916  TSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 975

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 976  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYV-KGYLNDQGIHKRGAE---------- 1024

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1025 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1061

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1062 QYPADDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1118

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1119 KEVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1178

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I +    +  ++     +++Y         + +G   S A 
Sbjct: 1179 G-------TDVWLGNAQELIKTGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1223

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +  ++ K      +      I    +N +      +  ++      Y F K+HAAAY +
Sbjct: 1224 KIMESVRKGKGLTEE-----MIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVL 1273

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + A+  T+   + + I                             
Sbjct: 1274 MAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1333

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA 
Sbjct: 1334 VLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEAR 1393

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1394 DDGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1433



 Score = 88.3 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 396 GMEGMLVDDGVPIAYKPQDVVLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 453

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 454 DKFERFSNPHERLSETIINLTHITDDMLVDA------PEIEEVLTEFKEWVGDAIFVA 505


>gi|168216978|ref|ZP_02642603.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens NCTC 8239]
 gi|182380934|gb|EDT78413.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            perfringens NCTC 8239]
          Length = 1449

 Score =  227 bits (579), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 164/981 (16%), Positives = 309/981 (31%), Gaps = 227/981 (23%)

Query: 55   ALEF-SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP--SIVLLVSTAEGYQR 111
             L+F  +K            ++DI     L            +P   I++L     G + 
Sbjct: 589  ILKFSFKKMKE---------EMDIHDVKTLNEKYLSNIDVKKLPLHHIIILAKNQTGIKN 639

Query: 112  LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
            L +LVS  +L D   +  R+  S + E   EGLI+ +   +G + +A     +    K +
Sbjct: 640  LYKLVSMAHL-DYFARRPRLPKSIITEY-REGLIIGSACEAGQLYKAVLEGKTDGELKEI 697

Query: 172  LTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNS 217
             +F        Y+ +Q  +  +              R    ++  L    + P+VAT + 
Sbjct: 698  ASFYD------YLEIQPIQNNEFLIRKGNVKDEDELRELNRKIYDLGKEMDKPVVATCDC 751

Query: 218  LFLSEEDYEAHDVLMAVA-HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
             FL   D     ++MA   +    +Q      T +  +K    +               E
Sbjct: 752  HFLDPNDEVFRRIIMAGQGYGDADNQPPLYFRTTNEMMKEFEYLGEE---------ACRE 802

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
            +    +  +      +    ++      +  E E+RN  +  +     +         + 
Sbjct: 803  VVIENTQKIADMVEAVKPIPDETFPPKIEGAEEEIRNMTMNKVHSIYGENL------PEV 856

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
             ++RLD ELN I    ++  +LI    +  + ++   VG  RGS   S  A    IT+++
Sbjct: 857  VQKRLDKELNSIINNGYAVLYLIAQKLVAKSLEDGYLVG-SRGSVGSSFVATMSDITEVN 915

Query: 397  ----------------------------PLRFSLLF-------------ERFLNPDRMSM 415
                                        P +                  E FL  +    
Sbjct: 916  GLPPHYVCPNCKKSEFFLDGSISSGADLPDKNCPDCGAKYIKDGHDIPFETFLGFEGDKE 975

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  + +  V +Y +  +G   V +  T G++  K A   V + LQ         
Sbjct: 976  PDIDLNFSGEYQAVVHKYTEVLFGKGYVFKAGTIGTVAEKTAYGFVKKYLQ--------- 1026

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--V 533
                  +    VS   I                     ++    G+ R +  H  GI  V
Sbjct: 1027 ------ERGLVVSQAEIER-------------------LTIGCTGIKRTSGQHPGGIMVV 1061

Query: 534  IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
              D  +    P+         D+  T F+   I    L+K D LG    T+L+   D   
Sbjct: 1062 PNDNEIYNFCPIQHPADDVNTDIITTHFDYHSI-SGRLLKLDILGHDDPTVLRMLQDLTG 1120

Query: 591  QRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
                 + L+        T           L    G+ G+ +  +  +RQ L   QP    
Sbjct: 1121 LDPKTIPLNDPKVISLFTSPDALGVTKEELGCEVGSYGLPEFGTKFVRQMLVDTQPKSFA 1180

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            D++ +  L          V+ N      K       +   +     +++Y         +
Sbjct: 1181 DLVRISGLSH-----GTDVWLNNAQYFIKEGYT--TLKDCIATRDDIMVYL--------M 1225

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
                    A  +   + K      D +     +   +  +      +   +      Y F
Sbjct: 1226 YKDLPPKTAFTIMEKVRKGKGLSEDDE-----ALMREKNVPDWYIESCKRI-----KYMF 1275

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------------------- 800
             K HA AY +++ + A+ K +YP  +     T+  D+ +                     
Sbjct: 1276 PKGHAVAYVMMAVRIAYYKVYYPEAYYTTYFTVRADDFDADLICKGEEAIKAKMEELNSL 1335

Query: 801  ------------KIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGT 847
                         I +   +  +  +  +   +       FK+ ++ I   L A++GVG 
Sbjct: 1336 GNNISVKEKGLLTILEISYEMYKRGLNFLKVDLYKSEATKFKIEEDGIRPPLNALQGVGD 1395

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              A+ I+E   +  F S ED   R    K+++ V+E+L   G L+               
Sbjct: 1396 NAAKTIVECRVNGEFISKEDLRLR---SKVSKTVIETLDNHGCLEGM------------- 1439

Query: 908  IQKYAQWVEKNRTNKHENIFA 928
                       + +   ++F 
Sbjct: 1440 -----------QESNQLSLFG 1449



 Score = 85.2 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 36/86 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++   + + I+++ A     A+AITD   + +  +    A    I+ I 
Sbjct: 350 VELHMHTTMSSMDAVTAASKIVERAAKFGHKAVAITDHGVVQAFPDAQIAAKKNNIKVIY 409

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       + +  +  F    
Sbjct: 410 GVEGYLADNGTPIVISGHEESFDDEY 435


>gi|298694556|gb|ADI97778.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus ED133]
          Length = 1436

 Score =  227 bits (579), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 160/944 (16%), Positives = 310/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+       L+   + N K++N+          + L+V   +G + L ++
Sbjct: 577  IKMVQQMKELGV-------LN-HNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKI 628

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 629  VSAS-LVKYFYRTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYD 686

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    T  +P++AT N+ +L E D  A 
Sbjct: 687  FIEIQPPALYQDLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIAR 746

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V+     +  ++  
Sbjct: 747  KILIASQPGNPL--NRSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERV 804

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI         +        E+R  + A       +         Q    RL+ EL  I
Sbjct: 805  VPIKDELYTPRMEG----ANEEIRELSYANARKLYGEDL------PQIVIDRLEKELKSI 854

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 855  IGNGFAVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCK 913

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 914  TSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 973

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 974  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYV-KGYLNDQGIHKRGAE---------- 1022

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1023 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1059

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1060 QYPADDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1116

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1117 KEVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1176

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I +    +  ++     +++Y         + +G   S A 
Sbjct: 1177 G-------TDVWLGNAQELIKTGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1221

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +  ++ K      +      I    +N +      +  ++      Y F K+HAAAY +
Sbjct: 1222 KIMESVRKGKGLTEE-----MIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVL 1271

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + A+  T+   + + I                             
Sbjct: 1272 MAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1331

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA 
Sbjct: 1332 VLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEAR 1391

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1392 DDGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1431



 Score = 88.3 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 334 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 394 GMEGMLVDDGVPIAYKPQDVVLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 451

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 452 DKFERFSNPHERLSETIINLTHITDDMLVDA------PEIEEVLTEFKEWVGDAIFVA 503


>gi|269202881|ref|YP_003282150.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98]
 gi|295406201|ref|ZP_06816008.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|297244429|ref|ZP_06928312.1| DNA polymerase III [Staphylococcus aureus A8796]
 gi|262075171|gb|ACY11144.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus ED98]
 gi|294968789|gb|EFG44811.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|297178459|gb|EFH37705.1| DNA polymerase III [Staphylococcus aureus A8796]
          Length = 1436

 Score =  227 bits (579), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 159/944 (16%), Positives = 309/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+       L+   + N K++N+          + L+V   +G + L ++
Sbjct: 577  IKMVQQMKELGV-------LN-HNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKI 628

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 629  VSAS-LVKYFYRTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYD 686

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    T  +P++AT N+ +L E D  A 
Sbjct: 687  FIEIQPPALYQDLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIAR 746

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V+     +  ++  
Sbjct: 747  KILIASQPGNPL--NRSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERV 804

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI         +        E+R  +         +         Q    RL+ EL  I
Sbjct: 805  VPIKDELYTPRMEG----ANEEIRELSYTNARKLYGEDL------PQIVIDRLEKELKSI 854

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 855  IGNGFAVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCK 913

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 914  TSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 973

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 974  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYV-KGYLNDQGIHKRGAE---------- 1022

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1023 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1059

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1060 QYPADDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1116

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1117 KEVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1176

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I +    +  ++     +++Y         + +G   S A 
Sbjct: 1177 G-------TDVWLGNAQELIKTGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1221

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +  ++ K      +      I    +N +      +  ++      Y F K+HAAAY +
Sbjct: 1222 KIMESVRKGKGLTEE-----MIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVL 1271

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + A+  T+   + + I                             
Sbjct: 1272 MAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1331

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA 
Sbjct: 1332 VLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEAR 1391

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1392 DDGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1431



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 334 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 394 GMEGMLVDDGVPIAYKPQDVVLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 451

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 452 DKFERFSNPHERLSETIINLTHITDDMLVDA------PEIEEVLTEFKEWVGDAIFVA 503


>gi|302332870|gb|ADL23063.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus JKD6159]
          Length = 1438

 Score =  227 bits (579), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 160/944 (16%), Positives = 310/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+       L+   + N K++N+          + L+V   +G + L ++
Sbjct: 579  IKMVQQMKELGV-------LN-HNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKI 630

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 631  VSAS-LVKYFYRTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYD 688

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    T  +P++AT N+ +L E D  A 
Sbjct: 689  FIEIQPPALYQDLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIAR 748

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V+     +  ++  
Sbjct: 749  KILIASQPGNPL--NRSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERV 806

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI         +        E+R  + A       +         Q    RL+ EL  I
Sbjct: 807  VPIKDELYTPRMEG----ANEEIRELSYANARKLYGEDL------PQIVIDRLEKELKSI 856

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 857  IGNGFAVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCK 915

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 916  TSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 975

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 976  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYV-KGYLNDQGIHKRGAE---------- 1024

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1025 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1061

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1062 QYPADDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1118

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1119 KEVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1178

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I +    +  ++     +++Y         + +G   S A 
Sbjct: 1179 G-------TDVWLGNAQELIKTGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1223

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +  ++ K      +      I    +N +      +  ++      Y F K+HAAAY +
Sbjct: 1224 KIMESVRKGKGLTEE-----MIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVL 1273

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + A+  T+   + + I                             
Sbjct: 1274 MAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1333

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA 
Sbjct: 1334 VLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEAR 1393

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1394 DDGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1433



 Score = 87.9 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 396 GMEGMLVDDGVPIAYKPQDVVLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 453

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 454 DKFERFSNPHERLSETIINLTHITDDMLVDA------PEIEEVLTEFKEWVGDAIFVA 505


>gi|15924254|ref|NP_371788.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926847|ref|NP_374380.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus N315]
 gi|148267754|ref|YP_001246697.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH9]
 gi|150393813|ref|YP_001316488.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus JH1]
 gi|156979585|ref|YP_001441844.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus Mu3]
 gi|253315620|ref|ZP_04838833.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus str.
            CF-Marseille]
 gi|255006051|ref|ZP_05144652.2| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus
            Mu50-omega]
 gi|257795680|ref|ZP_05644659.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781]
 gi|258416083|ref|ZP_05682351.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|258421666|ref|ZP_05684590.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus
            A9719]
 gi|258434822|ref|ZP_05688896.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A9299]
 gi|258444602|ref|ZP_05692931.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A8115]
 gi|258447565|ref|ZP_05695709.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A6300]
 gi|258449407|ref|ZP_05697510.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A6224]
 gi|258454786|ref|ZP_05702750.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A5937]
 gi|282892752|ref|ZP_06300987.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus A8117]
 gi|282927606|ref|ZP_06335222.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus A10102]
 gi|296274822|ref|ZP_06857329.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MR1]
 gi|54036992|sp|P63982|DPO3_STAAN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|54040953|sp|P63981|DPO3_STAAM RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|166217451|sp|A7X1P4|DPO3_STAA1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|13701064|dbj|BAB42359.1| DNA polymerase III, alpha chain PolC-type [Staphylococcus aureus
            subsp. aureus N315]
 gi|14247034|dbj|BAB57426.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
            subsp. aureus Mu50]
 gi|147740823|gb|ABQ49121.1| DNA polymerase III catalytic subunit, PolC type [Staphylococcus
            aureus subsp. aureus JH9]
 gi|149946265|gb|ABR52201.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus JH1]
 gi|156721720|dbj|BAF78137.1| DNA polymerase III alpha chain PolC-type [Staphylococcus aureus
            subsp. aureus Mu3]
 gi|257789652|gb|EEV27992.1| DNA polymerase III, alpha subunit [Staphylococcus aureus A9781]
 gi|257839231|gb|EEV63707.1| DNA polymerase subunit III alpha [Staphylococcus aureus A9763]
 gi|257842352|gb|EEV66777.1| DNA polymerase subunit III alpha, PolC-type [Staphylococcus aureus
            A9719]
 gi|257849183|gb|EEV73165.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A9299]
 gi|257850095|gb|EEV74048.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A8115]
 gi|257853756|gb|EEV76715.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A6300]
 gi|257857395|gb|EEV80293.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A6224]
 gi|257863169|gb|EEV85933.1| DNA polymerase subunit III alpha PolC-type [Staphylococcus aureus
            A5937]
 gi|282590609|gb|EFB95686.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus A10102]
 gi|282764749|gb|EFC04874.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus A8117]
 gi|285816946|gb|ADC37433.1| DNA polymerase III alpha subunit [Staphylococcus aureus 04-02981]
 gi|312829658|emb|CBX34500.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus ECT-R 2]
 gi|315131058|gb|EFT87042.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS03]
 gi|329727084|gb|EGG63540.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus 21172]
          Length = 1438

 Score =  227 bits (579), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 159/944 (16%), Positives = 309/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+       L+   + N K++N+          + L+V   +G + L ++
Sbjct: 579  IKMVQQMKELGV-------LN-HNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKI 630

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 631  VSAS-LVKYFYRTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYD 688

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    T  +P++AT N+ +L E D  A 
Sbjct: 689  FIEIQPPALYQDLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIAR 748

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V+     +  ++  
Sbjct: 749  KILIASQPGNPL--NRSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERV 806

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI         +        E+R  +         +         Q    RL+ EL  I
Sbjct: 807  VPIKDELYTPRMEG----ANEEIRELSYTNARKLYGEDL------PQIVIDRLEKELKSI 856

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 857  IGNGFAVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCK 915

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 916  TSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 975

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 976  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYV-KGYLNDQGIHKRGAE---------- 1024

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1025 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1061

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1062 QYPADDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1118

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1119 KEVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1178

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I +    +  ++     +++Y         + +G   S A 
Sbjct: 1179 G-------TDVWLGNAQELIKTGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1223

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +  ++ K      +      I    +N +      +  ++      Y F K+HAAAY +
Sbjct: 1224 KIMESVRKGKGLTEE-----MIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVL 1273

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + A+  T+   + + I                             
Sbjct: 1274 MAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1333

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA 
Sbjct: 1334 VLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEAR 1393

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1394 DDGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1433



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 396 GMEGMLVDDGVPIAYKPQDVVLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 453

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 454 DKFERFSNPHERLSETIINLTHITDDMLVDA------PEIEEVLTEFKEWVGDAIFVA 505


>gi|170288161|ref|YP_001738399.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
 gi|170175664|gb|ACB08716.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
          Length = 1367

 Score =  227 bits (579), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 157/940 (16%), Positives = 311/940 (33%), Gaps = 196/940 (20%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            L F +     GI           + +   + +             +LV   +G + L +L
Sbjct: 514  LRFVEMMKKIGI---------TKLSEIENLKDTIDYTALKPFHCTILVQNKKGLKNLYKL 564

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  Y+        RI  S L E   EGL++ +   SG + RA    +S    + +  F 
Sbjct: 565  VSDSYIK-YFYGVPRILKSALIE-NREGLLVGSACISGELGRAALEGASDSELEEIAKFY 622

Query: 176  KLFGDRLYVNLQ-------RHRGYDRYRE----SQVVQLAYTHELPLVATNNSLFLSEED 224
                   Y+ +             DR R      ++ ++A      +V T +  FL  ED
Sbjct: 623  D------YIEVMPLDVIAEDEEDLDRERLKEVYRRLYRIAKKLNKFVVMTGDVHFLDPED 676

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
                  L+A   +   + +++P +      +   + + IF D   A E  +E   R + +
Sbjct: 677  ARGRAALLAPQGNR--NFENQPALYLRTTEEMLEKAMEIFEDEEIAREVVIENPNRIADM 734

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            ++   P+  +        I +  +  +RN  +                  +  ++R++ E
Sbjct: 735  IEEVQPLEKKLHPP----IIENADEIVRNLTMKRAYEIYGDPL------PEIVQKRVEKE 784

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----- 399
            LN I    ++  +LI  + +Q +  +   VG  RGS   S+ A  L IT+++PL      
Sbjct: 785  LNAIINHGYAVLYLIAQELVQKSMSDGYVVG-SRGSVGSSLVANLLGITEVNPLPPHYRC 843

Query: 400  ------------------------------------FSLLFERFLNPDRMSMPDFDIDFC 423
                                                  + FE F+  +   +PD D++F 
Sbjct: 844  PECKYFEVVEDDRYGAGYDLPDKKCPVCGAPLKKDGHDIPFETFMGFEGDKVPDIDLNFS 903

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             + ++   R+V+  +G + V +  T  ++  K+A+  V               +      
Sbjct: 904  GEYQERAHRFVEELFGKDHVYRAGTINTIAEKSAVGYV---------------RSYEEKT 948

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQ 541
               +    +                     +   + G+ R    H  G++I  +   +  
Sbjct: 949  GKKLRKAEMER-------------------LVSMITGVKRTTGQHPGGLMIIPKDKEVYD 989

Query: 542  LVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
              P+          +  T F  + I    L+K D LG    T ++   D        + +
Sbjct: 990  FTPIQYPANDRNAGVFTTHFAYETIHD-DLVKIDALGHDDPTFIKMLKDLTG--IDPMTI 1046

Query: 599  SLIPFDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
             +   +    +            L +  GT GI +  +  +R  L   +P    +++ + 
Sbjct: 1047 PMDDPETLAIFSSVKPLGVDPVELESDVGTYGIPEFGTEFVRGMLVETRPKSFAELVRIS 1106

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             L                N ++ I   +  +  ++     ++ +         +  G   
Sbjct: 1107 GLSHG-------TDVWLNNARDWINLGYAKLSDVISCRDDIMNFL--------IHKGMEP 1151

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            S A  +   + K      +       S   K  + +    +   +      Y F K+HA 
Sbjct: 1152 SLAFKIMENVRKGKGITEE-----MESEMRKLKVPEWFIESCKRI-----KYLFPKAHAV 1201

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ-------------------- 807
            AY  ++++ A+ K HYP++F AA  T++ D  + +                         
Sbjct: 1202 AYVSMAFRIAYFKVHYPLQFYAAYFTIKGDQFDPVLVLRGKEAIKRRLRELKAMPAKDAQ 1261

Query: 808  ------------DARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIM 854
                        +        +PP +       F +  N +      + G+G + A  I+
Sbjct: 1262 KKNEVSVLEVALEMILRGFSFLPPDIFKSDAKKFLIEGNSLRIPFNKLPGLGDSVAESII 1321

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             A  +KPF S+ED   R    K+N+  +E +   G L   
Sbjct: 1322 RAREEKPFTSVEDLMKRT---KVNKNHIELMKSLGVLGDL 1358



 Score =  115 bits (288), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 1/102 (0%)

Query: 2   TQYLEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
            + ++ SP   V L  H+ +S  +    +N  + +      PA+A+TD  N+ +   F  
Sbjct: 260 AKRMDNSPVKRVELHAHTKFSDQDAITDVNEYVKRAKEWGFPAVALTDHGNVQAIPYFYD 319

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
            A  AGI+PI G +  +       + N          + V+L
Sbjct: 320 AAKEAGIKPIFGIEAYLVSDVEPVIRNLSYDSSFENATFVVL 361


>gi|160893350|ref|ZP_02074137.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50]
 gi|156865042|gb|EDO58473.1| hypothetical protein CLOL250_00899 [Clostridium sp. L2-50]
          Length = 1514

 Score =  227 bits (579), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 140/939 (14%), Positives = 299/939 (31%), Gaps = 149/939 (15%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  +     G++        ++  + L   +            ++L     G   L  L
Sbjct: 614  VKLYEMLVERGVK-------TVEDVNELGSASDDTIKKGRTYHGIILAKNEIGRVNLYRL 666

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +S  ++     +  R+ +S + +   EGLI+ +   +G + RA   ++     + +    
Sbjct: 667  ISEAHVR-YFNRRPRMPMSMINKY-REGLILGSACEAGELFRAVVDDAPD---EEIARLV 721

Query: 176  KLFGDRLYVNLQRHRGYD---------------RYRESQVVQLAYTHELPLVATNNSLFL 220
              F    Y+ +Q     +               +    ++V+L      P+VAT +  FL
Sbjct: 722  NFFD---YLEIQPIGNNEFMTRKKENPCTIEDLQNYNKRIVELGRLFNKPVVATCDVHFL 778

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
              ED     ++M          +D     P ++      +           E   E+   
Sbjct: 779  DPEDSIYRAIIM-----KSKGFEDAVNQPPLYFRTTEEMLAEFE---YLGSEKAREVVIT 830

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             + ++      +      +   I +  +  L N                     +   +R
Sbjct: 831  NTNLIADMVEYMDPVRPDKAPPIIENSDETLTNICYEKAHKIYGPDL------PEVVVER 884

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            L+ EL+ I    F+  ++I    +  +  +   VG  RGS   S  A    IT+++PL  
Sbjct: 885  LERELHSIISNGFAVMYIIAQKLVWDSNDHGYLVG-SRGSVGSSFVATMAGITEVNPLSA 943

Query: 400  --------------------------------------------FSLLFERFLNPDRMSM 415
                                                          + FE FL       
Sbjct: 944  HYICPECHFVDFDSELVKSYSGMSGCDMPDRDCPRCGHPLIKEGHDIPFETFLGFKGDKE 1003

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  + +     Y +  +G  +  +  T  ++  K A   V    +   ++ +  
Sbjct: 1004 PDIDLNFSGEYQSCAHAYTEVLFGKGKAFRAGTVTTVADKTAYGYVYNYFK-DLAKDEAR 1062

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV-- 533
             +           ++   D+      R        +  ++    G+ R    H  G++  
Sbjct: 1063 AEATAMGDLTQKEIEKYVDEKAIVTKRS-----CEMERLAIGCTGVKRSTGQHPGGMIVL 1117

Query: 534  IGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
                 +    P+ +         VT           L+K D LG    T++++  D    
Sbjct: 1118 PRHEEIYSFTPIQKPANDMTTDVVTSHFEYHSIDHNLLKLDILGHDDPTMIRRLEDLTGL 1177

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                   + I  DD +   L     +L I   + +G+     G+     +  + ++    
Sbjct: 1178 DA-----TTIRLDDPDVMALFHGTESLHITPEDINGIPLGSLGVPEFGTDFAMQMLIDAN 1232

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
            P    ++V      +G +  +     +    + T    I     + +  +  G     A 
Sbjct: 1233 PQNFSDLVRIAGLAHGTDVWLGNAQELIKSGQCTISTAICCRDDIMVYLIHMGLESGTAF 1292

Query: 712  VLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
             +   + K  + +    + E +      +G+      +  ++      Y F K+HAAAY 
Sbjct: 1293 QIMENVRKGNVAKGKCAKWEEWKEDMKAHGVPDWYIWSCQKI-----KYMFPKAHAAAYV 1347

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ----------------------- 807
            +++++ A+ K +YP+++ AA  ++                                    
Sbjct: 1348 MMAWRIAYFKVNYPLQYYAAFFSIRASAFSYEMMCFGKEKVLYHINMIQSIDKNKRTAKD 1407

Query: 808  -----------DARQFNIQIMPPSVNTPC-VDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                       +      + MP  +     + F+V D +I  SLA+I+G+G   A+ + +
Sbjct: 1408 EDKLKDLKLVLEMYARGFEFMPIDIYVADDIRFQVIDGKIMPSLASIEGMGEKAAKQLKD 1467

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            A+    F S ED  +     K+ +  ++ L   G LD  
Sbjct: 1468 AACKGRFISKEDLQA---HSKIGKSAIDKLSELGILDGM 1503



 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 1/87 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA-LEFSQKACAAGIQPI 70
           V L +H+  S ++  + +  I+ +      PAIAITD     +  +    K    G + I
Sbjct: 372 VELHMHTVMSEMDSVVDIEKIVKRANDWGHPAIAITDHGVAQAFPIAAHAKGMKDGFKLI 431

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVP 97
            GC+          + N       T  
Sbjct: 432 FGCEGYFVDDLKNLVINPKGQDLNTEY 458


>gi|223044235|ref|ZP_03614272.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            capitis SK14]
 gi|222442385|gb|EEE48493.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            capitis SK14]
          Length = 1438

 Score =  227 bits (579), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 159/922 (17%), Positives = 305/922 (33%), Gaps = 179/922 (19%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
              + N K+TN+          + L+V   EG + L ++VS   L+    ++ RI  S L 
Sbjct: 593  HNEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKIVSAS-LVKYYYRTPRIPRSLLN 651

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLY-----VNLQRHR 190
            E   EG+++ T    G +  A         EK    +   ++    LY       L R  
Sbjct: 652  EY-REGILVGTACDEGELFTAVMQKDQAEVEKIAKYYDFIEVQPPALYQDLMDRELIRDN 710

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                    ++++   +  +P++AT N+ +L E D  A  +L+A      +++        
Sbjct: 711  ETLTEIYQRLIEAGDSVNIPVIATGNAHYLYEHDAIARKILIASQPGNPLNRT--TLPEA 768

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                 +       F    +A E  V+     +  ++   PI  +      +       +E
Sbjct: 769  HFRTTDEMLDEFHFLGEEKAYEIVVKNTNELAERIERVVPIKDKLFTPRMEG----ANDE 824

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            +R  + +  +    +         Q    RL+ EL  I    FS  +LI    ++ +  +
Sbjct: 825  IRELSYSNAKKLYGEDL------PQIVIDRLEKELESIIGNGFSVIYLISQRLVKKSLDD 878

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------- 399
               VG  RGS   S  A    IT+++PL                                
Sbjct: 879  GYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCKTSEFFNDGSVGSGFDLPDKKCP 937

Query: 400  ----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                        + FE FL      +PD D++F  + +     Y +  +G ++V +  T 
Sbjct: 938  TCGNELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFGEDKVFRAGTI 997

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G++  K A   V +          R  +                                
Sbjct: 998  GTVAEKTAFGFV-KGYLNDQGIHKRGAE-------------------------------- 1024

Query: 510  RLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRSD---LPVTQFNMKWIE 564
             +  + +   G+ R    H  GI  V     +    P+             T F+   I 
Sbjct: 1025 -IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQFPADDQSAAWMTTHFDFHSIH 1083

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY-----------HLLT 613
               ++K D LG    T+++   D          + +   D  + +            +L 
Sbjct: 1084 D-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDDKDTMQIFSGPESLGVTEDEILC 1140

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GT G+ +  +  +RQ LE  +P    +++ +  L                N +E I  
Sbjct: 1141 KTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG-------TDVWLGNAQELIRQ 1193

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  ++     +++Y         + +G   S A      + K      +       
Sbjct: 1194 GICDLSSVIGCRDDIMVYL--------MYAGLEPSMAFKTMEFVRKGRGLTDEMV----- 1240

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
                +N +      +  ++      Y F K+HAAAY +++ + A+ K H+P+ + AA  T
Sbjct: 1241 EAMKENDVPDWYLDSCRKI-----KYMFPKAHAAAYVLMAVRIAYFKVHHPLYYYAAYFT 1295

Query: 794  LEMDNVEKIKK---------------------------------FCQDARQFNIQIMPPS 820
            +   + + I                                      +      ++ P S
Sbjct: 1296 IRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDVLTVLEIMNEMAHRGFRMQPIS 1355

Query: 821  VNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            +      DF + ++ +     A+ G+G   A+ I+EA  + PF S ED   +     L++
Sbjct: 1356 LEKSQAFDFVIEEDTLIPPFVAVPGLGENVAKRIVEAREEGPFLSKEDLNKKA---GLSQ 1412

Query: 880  RVLESLVFAGALDCFGYSRMQL 901
            +V++ L   G+L      + QL
Sbjct: 1413 KVIDYLDEMGSLPGL-PDKAQL 1433



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++ + +++ A     AIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGSYVEQAAEWGHSAIAVTDHNVVQAFPDAHNAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 396 GMEGMLVDDGVPIAYKPTDRVLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 453

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 454 DKFERFSNPHERLSETIINLTHITDDMLTDA------PEIEEVLTEFKEWVGDAIFVA 505


>gi|153938397|ref|YP_001391721.1| DNA polymerase III PolC [Clostridium botulinum F str. Langeland]
 gi|152934293|gb|ABS39791.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum F str. Langeland]
 gi|295319747|gb|ADG00125.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum F str. 230613]
          Length = 1432

 Score =  227 bits (579), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 149/905 (16%), Positives = 284/905 (31%), Gaps = 189/905 (20%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  +++L   A G + L +LVS+  L +   +  R+  S + E   EGLI+ +   +
Sbjct: 603  KEPTYHLIILAKNAVGLKNLYKLVSKSNL-EYFFKRPRMAKSLINEY-KEGLIIGSACEA 660

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRES 198
            G I +      ++   K ++ F        Y+ +Q     +              +    
Sbjct: 661  GQIYKEILKGKTKEELKNMIDFYD------YLEIQPLGNNEFLVKNGSVKDEKELQEINK 714

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++ +L   +  P+VAT +  FL EE +E    ++        +    P          + 
Sbjct: 715  KICELGEFYNKPVVATCDVHFLDEE-HEVFRRILMSGQGFSDADNQPPLYFRTTEEMLKE 773

Query: 259  EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
                             E+    +  +      +    E+      +  E ++R   +  
Sbjct: 774  FEYLGEE-------KAKEVVIYNTNKIADMIDEIKPIPEETFPPKIEGAEEDIRRMTIEK 826

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
                            +   +RL  ELN I    ++  +LI    +  + ++   VG  R
Sbjct: 827  AHAIYGDPL------PEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SR 879

Query: 379  GSGAGSVTAYALTITDIDPLR--------------------------------------- 399
            GS   S  A    IT+++ L                                        
Sbjct: 880  GSVGSSFAATMSDITEVNGLPPHYVCPKCKYSEFFTDGSVGSGADLEDKDCPNCGTKLIK 939

Query: 400  --FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
                + FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A
Sbjct: 940  DGHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTA 999

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
               V + L                                    +    +   +  +S+ 
Sbjct: 1000 YGFVKKYLD----------------------------------EKNIKANNAEIERLSKG 1025

Query: 518  LEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFD 572
              G+ R +  H  GI  V  D  +    P+         D+  T F+   I    L+K D
Sbjct: 1026 CTGVKRTSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSI-SGRLLKLD 1084

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQL 623
             LG    T+L+   D        V L         T           +    GT G+ + 
Sbjct: 1085 ILGHDDPTILRMLQDLTKVDPKSVPLGDPKVISLFTSPEALGVTEEDIDCPVGTYGLPEF 1144

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +RQ L   +P    ++  +  L          V+ N      K             
Sbjct: 1145 GTKFVRQMLLDTKPKSFAELARISGLSH-----GTDVWLNNAQYFIKEGYT--------- 1190

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
              +  I  ++ +M             A  +   + K      +++     +   ++ +  
Sbjct: 1191 TIKDCISTRDDIMVYLLQ-KELPPKSAFTIMEKVRKGKGLTEEQE-----ALMKEHDVPD 1244

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--- 800
                +  ++      Y F K HA AY +++ + A+ K +YP  + A   ++  D+ +   
Sbjct: 1245 WYIESCKKI-----KYMFPKGHAVAYVMMAMRIAYFKVYYPRAYYATYFSVRADDFDADL 1299

Query: 801  ------------------------------KIKKFCQDARQFNIQIMPPSVNTPCV-DFK 829
                                           I + C +  +  I+ +   +       F 
Sbjct: 1300 IVKGEEKIKEKMNELYAMGNNIAQKDKGLLTILEICYEMYKRGIKFLKVDLYKSNATKFL 1359

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +  + I   L+A++GVG   A+ I EA  +  F S ED   R    K+ + V+E+L   G
Sbjct: 1360 IEGDNIRPPLSALQGVGKNAAKSIEEARLEGEFISKEDLRLRT---KVTKTVIETLENHG 1416

Query: 890  ALDCF 894
             L   
Sbjct: 1417 CLRGM 1421



 Score = 97.6 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 34/86 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++G   ++ ++ + A     A+AITD   + +  +    A    I+ I 
Sbjct: 333 VELHMHSQMSAMDGMTPVSELVKRAAKWGHKAVAITDHGVVQAYPDAMSAAKKGNIKVIY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       ++  G        
Sbjct: 393 GIEAYLVDDGVPIVSKAGDKTIEDTF 418


>gi|295427751|ref|ZP_06820383.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128109|gb|EFG57743.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 1436

 Score =  227 bits (578), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 160/944 (16%), Positives = 309/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+       L+   + N K++N+          + L+V   +G + L ++
Sbjct: 577  IKMVQQMKELGV-------LN-HNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKI 628

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 629  VSAS-LVKYFYRTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYD 686

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    T  +P++AT N+ +L E D  A 
Sbjct: 687  FIEIQPPALYQDLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIAR 746

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V+     +  ++  
Sbjct: 747  KILIASQPGNPL--NRSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERV 804

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI         +        E+R  + A       +         Q    RL+ EL  I
Sbjct: 805  VPIKDELYTPRMEG----ANEEIRELSYANARKLYGEDL------PQIVIDRLEKELKSI 854

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 855  IGNGFAVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCK 913

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 914  TSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 973

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 974  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYV-KGYLNDQGIHKRGAE---------- 1022

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1023 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1059

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1060 QYPADDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1116

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1117 KEVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1176

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I +    +  ++     +++Y         + +G   S A 
Sbjct: 1177 G-------TDVWLGNAQELIKTGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1221

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +  ++ K      +      I    +N +      +  ++      Y F K+HAAAY +
Sbjct: 1222 KIMESVRKGKGLTEE-----MIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVL 1271

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + A+  T+   + + I                             
Sbjct: 1272 MAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1331

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      +F +    +     ++ G+G   A+ I+EA 
Sbjct: 1332 VLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGETLIPPFISVPGLGENVAKRIVEAR 1391

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1392 DDGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1431



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 334 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 394 GMEGMLVDDGVPIAYKPQDVVLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 451

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 452 DKFERFSNPHERLSETIINLTHITDDMLVDA------PEIEEVLTEFKEWVGDAIFVA 503


>gi|311068180|ref|YP_003973103.1| DNA polymerase III PolC [Bacillus atrophaeus 1942]
 gi|310868697|gb|ADP32172.1| DNA polymerase III PolC [Bacillus atrophaeus 1942]
          Length = 1437

 Score =  227 bits (578), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 150/917 (16%), Positives = 289/917 (31%), Gaps = 173/917 (18%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +    Q N  M               LL     G + L +LVS  ++     +  RI  
Sbjct: 589  DIQYHDQLNENMGQSNAYQRSRPYHATLLAVNDTGLKNLFKLVSMSHIH-YFYRVPRIPR 647

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY-----VNL 186
            S L++   EGL++ +    G +       S +  E     +   ++    +Y     + L
Sbjct: 648  SQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLEVQPPEVYRHLLQLEL 706

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R     +   + + +L    + P+VAT N  +L++ED     +L++             
Sbjct: 707  VRDEKALKEIITNITKLGEKLDKPVVATGNVHYLNDEDKIYRKILISSQGGA-NPLNRHE 765

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                     +       F    +A E  V   ++ + +++   PI       + +     
Sbjct: 766  LPKVHFRTTDEMLEAFSFLGAEKAKEIVVANTQKVASMIEEIKPIKDDLYTPKIEG---- 821

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             + E+R+ +         +         +    R++ EL  I    F+  +LI    ++ 
Sbjct: 822  ADQEIRDMSYQRARSIYGE------ELPEIVEARIEKELKSIIGHGFAVIYLISHKLVKR 875

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            +  +   VG  RGS   S+ A    IT+++PL                            
Sbjct: 876  SLDDGYLVG-SRGSVGSSLVATLTEITEVNPLAPHYVCPECRHSEFFNDGSVGSGFDLPD 934

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL      +PD D++F  + +     Y +  +G + V +
Sbjct: 935  KMCPNCNTPLKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPHAHNYTKVLFGEDNVYR 994

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V                                            
Sbjct: 995  AGTIGTVAEKTAYGYVKGYAGDH----------------------------------NLH 1020

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVR---SDLPVTQFNM 560
                 +  + Q   G+ R    H  GI  V     +    P+        S+   T F+ 
Sbjct: 1021 MRGAEIDRLVQGCTGVKRTTGQHPGGIIVVPDYMDIYDFSPIQFPADATGSEWKTTHFDF 1080

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDHETYHLL 612
              I    L+K D LG    T+++   D                + +         T   +
Sbjct: 1081 HSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFQGTESLGVTEEQI 1139

Query: 613  -TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
                GTLGI +  +  +RQ LE  +P    +++ +  L                N +E I
Sbjct: 1140 GCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSHG-------TDVWLGNAQELI 1192

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
             +    +  ++     +++Y         +  G   S A  +   + K      +     
Sbjct: 1193 HNNICELSEVIGCRDDIMVYL--------IYQGLEPSLAFKIMEFVRKGKGLTPE----- 1239

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ + + AA 
Sbjct: 1240 WEEEMKNNKVPDWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHHALLYYAAY 1294

Query: 792  MTLEMDNVEKIKK---------------------------------FCQDARQFNIQIMP 818
             T+  D+ +                                       ++  +       
Sbjct: 1295 FTVRADDFDIDTMIKGSTAIKAVMDDINSKGLDASPKEKNLLTVLELAREMCERGYSFQK 1354

Query: 819  PSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
              +      +F +  N +     +I G+GT  A +I++A  +  F S ED   R    K+
Sbjct: 1355 VDLYRSSASEFIIDGNSLIPPFNSIPGLGTNAALNIVKARGEGEFLSKEDLQKR---GKV 1411

Query: 878  NRRVLESLVFAGALDCF 894
            ++ +LE L   G L+  
Sbjct: 1412 SKTILEYLDRHGCLEAL 1428



 Score = 87.9 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++    +  ++++       AIA+TD   + S  +    A   GI+ I 
Sbjct: 335 VELHLHSPMSQMDAVTGVGKLVEQAKKWGHEAIALTDHAVVQSFPDAYAAAKKNGIKMIY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N           IV 
Sbjct: 395 GMEANIVDDGVPIAYNPAHRLLEEDTYIVF 424


>gi|146297347|ref|YP_001181118.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
            saccharolyticus DSM 8903]
 gi|145410923|gb|ABP67927.1| DNA polymerase III catalytic subunit, PolC type [Caldicellulosiruptor
            saccharolyticus DSM 8903]
          Length = 1402

 Score =  227 bits (578), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 148/891 (16%), Positives = 289/891 (32%), Gaps = 187/891 (20%)

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
                +LV   +G + L +LVS  +L +   +  RI  S L ++  +GLI+ +   SG + 
Sbjct: 579  YHATILVKNQQGLKNLYKLVSYSHL-EYFYKRPRIPKSVLIQL-KDGLILGSACESGEVF 636

Query: 157  RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--------------HRGYDRYRESQVVQ 202
            RA     S    +++++         ++ +                     R    ++ Q
Sbjct: 637  RAIMEGKSDDELEKIVSLYD------FLEIMPVENNSFLIREGYLKDEEQLRQINKKIYQ 690

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
            L       +VAT+++ +          +L                        +      
Sbjct: 691  LGKKLNKLVVATSDAHYCHPHQRILRQILKHNQ----GYDDVENDPYLYFRTTDEMLKEF 746

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
             +     A E  VE   + + +++   PI       + +      E E+ N  +      
Sbjct: 747  EYLGKEAAYEVVVENTNKIADMIEDVKPIPDETFPPKIEG----AEEEIYNMTMKRAHEI 802

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
              +         +  +QRL+ ELN I +  F+  +LI    +  +  +   VG  RGS  
Sbjct: 803  YGEPL------PEIVKQRLEKELNSIIKNGFAVMYLIAQKLVSKSLSDGYLVG-SRGSVG 855

Query: 383  GSVTAYALTITDIDPLR-----------------------------------------FS 401
             S+ A    IT+++PL                                            
Sbjct: 856  SSLVATMCGITEVNPLPPHYVCPNCKYSEFVTDGTVGCGYDLEDKDCPRCGTKLKKDGHD 915

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            + FE FL  D    PD D++F  + +    ++ ++ +G   V +  T  ++  K A   V
Sbjct: 916  IPFETFLGFDGDKEPDIDLNFSGEYQPIAHKFTEDLFGQGYVFRAGTISTVAEKTAHGFV 975

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
             +     Y++   L                                   +L +SQ   G+
Sbjct: 976  TK-----YAEEKGLSLHPAE-----------------------------VLRLSQGCTGV 1001

Query: 522  YRHASTHAAGIVIGDRP--LSQLVPMYR--DVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
             R    H  G++I  +   +    P+    D      +T           L+K D LG  
Sbjct: 1002 KRTTGQHPGGLMIVPKDKEIFDFTPIQHPADSEDKSVITTHFDYHAISGRLLKLDILGHD 1061

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQLESSGM 628
              T+++   D        + L         T           +    GT GI +  +  +
Sbjct: 1062 DPTVIRMLQDLTGVDPRSIPLDDKATLSIFTSTEALGVSPEDIDCEVGTFGIPEFGTRFV 1121

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            RQ L   +P    +++ +  L   G         +       + +    +  ++     +
Sbjct: 1122 RQMLIETKPKSFAELVRISGLSH-GTNVWTNNAQDL------VRNGIATLKEVISTRDDI 1174

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++Y  Q         G    ++  +   + K    + + +           G+ +    +
Sbjct: 1175 MLYLIQ--------KGVPPKDSFRIMEDVRKGKGLKPEDE-----ELLRSYGVPEWYIES 1221

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK------- 801
              ++      Y F K+HAAAY +++++ A+ K HY   F A   T+  D+ +        
Sbjct: 1222 CKKI-----TYMFPKAHAAAYVMMAFRIAYFKVHYKEAFYATYFTVRADDFDYATILKGR 1276

Query: 802  --------------------------IKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNR 834
                                      + +   +     ++  P  +N    + F + D  
Sbjct: 1277 EFIRQKIRDMENRMNSLSQKDKNLLTVLEIANEMLARGLKFYPVDLNESDAEKFIIKDGG 1336

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            +     A+  VG   AR+I+EA  +  F S+ED   R    KLN++V+E L
Sbjct: 1337 LLIPFNALPNVGIAAARNIVEARKEGKFLSIEDLQRRA---KLNKQVIEIL 1384



 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++   S   ++   A     AIAITD   + +  E  + + + G++ I 
Sbjct: 304 VELHAHTKMSTMDAVCSAEELIKTAAKWGHRAIAITDHGVVQAFPEAQEVSKSEGLKVIY 363

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G +  +       + N  +        +V+
Sbjct: 364 GMECYLIDDGVPVVYNPKENQSLDTTFVVV 393


>gi|267798807|gb|ACY79084.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798809|gb|ACY79085.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798815|gb|ACY79088.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798817|gb|ACY79089.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798819|gb|ACY79090.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798821|gb|ACY79091.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798823|gb|ACY79092.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798825|gb|ACY79093.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798827|gb|ACY79094.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798829|gb|ACY79095.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798831|gb|ACY79096.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798833|gb|ACY79097.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798835|gb|ACY79098.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798837|gb|ACY79099.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|267798839|gb|ACY79100.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 203

 Score =  227 bits (578), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 65/214 (30%), Positives = 105/214 (49%), Gaps = 12/214 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
           N  +F++EE +EAH++ +A+     +    RP+ 
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKN 203


>gi|282918963|ref|ZP_06326698.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus C427]
 gi|282316773|gb|EFB47147.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus C427]
          Length = 1438

 Score =  227 bits (578), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 160/944 (16%), Positives = 309/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+       L+   + N K++N+          + L+V   +G + L ++
Sbjct: 579  IKMVQQMKELGV-------LN-HNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKI 630

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 631  VSAS-LVKYFYRTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYD 688

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    T  +P++AT N+ +L E D  A 
Sbjct: 689  FIEIQPPALYQDLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIAR 748

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V+     +  ++  
Sbjct: 749  KILIASQPGNPL--NRSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERV 806

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI         +        E+R  + A       +         Q    RL+ EL  I
Sbjct: 807  VPIKDELYTPRMEG----ANEEIRELSYANARKLYGEDL------PQIVIDRLEKELKSI 856

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 857  IGNGFAVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCK 915

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 916  TSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 975

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 976  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYV-KGYLNDQGIHKRGAE---------- 1024

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1025 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1061

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1062 QYPADDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1118

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1119 KEVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1178

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I +    +  ++     +++Y         + +G   S A 
Sbjct: 1179 G-------TDVWLGNAQELIKTGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1223

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +  ++ K      +      I    +N +      +  ++      Y F K+HAAAY +
Sbjct: 1224 KIMESVRKGKGLTEE-----MIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVL 1273

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + A+  T+   + + I                             
Sbjct: 1274 MAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1333

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      +F +    +     ++ G+G   A+ I+EA 
Sbjct: 1334 VLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGETLIPPFISVPGLGENVAKRIVEAR 1393

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1394 DDGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1433



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 396 GMEGMLVDDGVPIAYKPQDVVLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 453

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 454 DKFERFSNPHERLSETIINLTHITDDMLVDA------PEIEEVLTEFKEWVGDAIFVA 505


>gi|49483427|ref|YP_040651.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282903819|ref|ZP_06311707.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus C160]
 gi|282905582|ref|ZP_06313437.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
            Btn1260]
 gi|282908557|ref|ZP_06316387.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus WW2703/97]
 gi|283958007|ref|ZP_06375458.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus A017934/97]
 gi|297591291|ref|ZP_06949929.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8]
 gi|56748683|sp|Q6GHH1|DPO3_STAAR RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|49241556|emb|CAG40242.1| DNA polymerase III PolC-type [Staphylococcus aureus subsp. aureus
            MRSA252]
 gi|282327619|gb|EFB57902.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus WW2703/97]
 gi|282330874|gb|EFB60388.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
            Btn1260]
 gi|282595437|gb|EFC00401.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus C160]
 gi|283790156|gb|EFC28973.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus A017934/97]
 gi|297576177|gb|EFH94893.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus MN8]
 gi|315194152|gb|EFU24545.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus CGS00]
          Length = 1438

 Score =  227 bits (578), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 160/944 (16%), Positives = 309/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+       L+   + N K++N+          + L+V   +G + L ++
Sbjct: 579  IKMVQQMKELGV-------LN-HNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKI 630

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 631  VSAS-LVKYFYRTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYD 688

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    T  +P++AT N+ +L E D  A 
Sbjct: 689  FIEIQPPALYQDLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIAR 748

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V+     +  ++  
Sbjct: 749  KILIASQPGNPL--NRSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERV 806

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI         +        E+R  + A       +         Q    RL+ EL  I
Sbjct: 807  VPIKDELYTPRMEG----ANEEIRELSYANARKLYGEDL------PQIVIDRLEKELKSI 856

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 857  IGNGFAVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCK 915

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 916  TSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 975

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 976  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYV-KGYLNDQGIHKRGAE---------- 1024

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1025 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1061

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1062 QYPADDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1118

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1119 KEVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1178

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I +    +  ++     +++Y         + +G   S A 
Sbjct: 1179 G-------TDVWLGNAQELIKTGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1223

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +  ++ K      +      I    +N +      +  ++      Y F K+HAAAY +
Sbjct: 1224 KIMESVRKGKGLTEE-----MIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVL 1273

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + A+  T+   + + I                             
Sbjct: 1274 MAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1333

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      +F +    +     ++ G+G   A+ I+EA 
Sbjct: 1334 VLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGETLIPPFISVPGLGENVAKRIVEAR 1393

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1394 DDGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1433



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 396 GMEGMLVDDGVPIAYKPQDVVLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 453

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 454 DKFERFSNPHERLSETIINLTHITDDMLVDA------PEIEEVLTEFKEWVGDAIFVA 505


>gi|242373555|ref|ZP_04819129.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1]
 gi|242348918|gb|EES40520.1| DNA polymerase III PolC [Staphylococcus epidermidis M23864:W1]
          Length = 1442

 Score =  227 bits (578), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 161/944 (17%), Positives = 309/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+        +   + N K+TN+          + L+V   EG + L ++
Sbjct: 583  IKMVQQMKELGV--------NNHNEINKKLTNEDAYKRARPSHVTLIVQNQEGLKNLFKI 634

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EG+++ T    G +  A         EK    + 
Sbjct: 635  VSAS-LVQYYYRTPRIPRSLLNEY-REGILVGTACDEGELFTAVMQKDQSEVEKIAKYYD 692

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R +        ++++   +  +P++AT N+ +L E D  A 
Sbjct: 693  FIEVQPPALYQDLMDRELIRDKETLIEIYKRLIEAGESANIPVIATGNAHYLYEHDAIAR 752

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V+     +  ++  
Sbjct: 753  KILIASQPGNPL--NRSTLPEAHFRTTDEMLDEFHFLGEEKAHEIVVKNTNELADRIERV 810

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI  +      +       +E+R  + +  +    +         Q    RL+ EL  I
Sbjct: 811  VPIKDKLFTPRMEG----ANDEIRELSYSNAKKLYGEDL------PQIVIDRLEKELASI 860

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                FS  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 861  IGNGFSVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICSHCK 919

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 920  TSEFFDDGSVGSGFDLPDKKCPTCGNDLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 979

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 980  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGFV-KGYLNDQGIHKRGAE---------- 1028

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1029 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1065

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1066 QFPADDQSAAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1122

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             D  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1123 KDTMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1182

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I      +  ++     +++Y         + +G   S A 
Sbjct: 1183 G-------TDVWLGNAQELIRQGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1227

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
                 + K      +            N +      +  ++      Y F K+HAAAY +
Sbjct: 1228 KTMEFVRKGRGLTDEMV-----EAMKANDVPDWYLDSCRKI-----KYMFPKAHAAAYVL 1277

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + AA  T+   + + I                             
Sbjct: 1278 MAVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1337

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      DF +  + +     A+ G+G   A+ I+EA 
Sbjct: 1338 VLTVLEIMNEMAHRGYRMQPISLEKSQAFDFIIEGDTLIPPFVAVPGLGENVAKRIVEAR 1397

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             + PF S ED   +     L+++V++ L   G+L      + QL
Sbjct: 1398 EEGPFLSKEDLNKKA---GLSQKVIDYLDEMGSLPDL-PDKAQL 1437



 Score = 87.9 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 65/178 (36%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++++ +++ A     AIA+TD N + +  +    A   G++ I 
Sbjct: 340 VEFHLHTAMSQMDGIPNISSYVEQAAEWGHSAIAVTDHNVVQAFPDAHNAAEKHGLKMIY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 400 GMEGMLVDDGVPIAYKPTDRNLKDATYVVFDVET-TGLSNQYDKIIELAAVKVHD-GEII 457

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 458 DKFERFSNPHERLSETIINLTHITDDMLTDA------PEIEEVLTEFKEWVGDAIFVA 509


>gi|257425318|ref|ZP_05601743.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus 55/2053]
 gi|257427979|ref|ZP_05604377.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus 65-1322]
 gi|257430612|ref|ZP_05606994.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
            68-397]
 gi|257433372|ref|ZP_05609730.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
            E1410]
 gi|257436214|ref|ZP_05612261.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus M876]
 gi|282910836|ref|ZP_06318639.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus WBG10049]
 gi|282914041|ref|ZP_06321828.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
            aureus subsp. aureus M899]
 gi|282924086|ref|ZP_06331762.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus C101]
 gi|293501073|ref|ZP_06666924.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus 58-424]
 gi|293510035|ref|ZP_06668743.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus M809]
 gi|293526621|ref|ZP_06671306.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
            aureus subsp. aureus M1015]
 gi|257271775|gb|EEV03913.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus 55/2053]
 gi|257274820|gb|EEV06307.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus 65-1322]
 gi|257278740|gb|EEV09359.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
            68-397]
 gi|257281465|gb|EEV11602.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
            E1410]
 gi|257284496|gb|EEV14616.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus M876]
 gi|282314058|gb|EFB44450.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus C101]
 gi|282322109|gb|EFB52433.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
            aureus subsp. aureus M899]
 gi|282325441|gb|EFB55750.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus WBG10049]
 gi|290920693|gb|EFD97756.1| DNA polymerase III, alpha chain, Gram-positive type [Staphylococcus
            aureus subsp. aureus M1015]
 gi|291096078|gb|EFE26339.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus 58-424]
 gi|291466979|gb|EFF09497.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            aureus subsp. aureus M809]
 gi|312438356|gb|ADQ77427.1| DNA polymerase III PolC [Staphylococcus aureus subsp. aureus TCH60]
          Length = 1438

 Score =  227 bits (578), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 160/944 (16%), Positives = 309/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+       L+   + N K++N+          + L+V   +G + L ++
Sbjct: 579  IKMVQQMKELGV-------LN-HNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKI 630

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 631  VSAS-LVKYFYRTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYD 688

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    T  +P++AT N+ +L E D  A 
Sbjct: 689  FIEIQPPALYQDLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIAR 748

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V+     +  ++  
Sbjct: 749  KILIASQPGNPL--NRSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERV 806

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI         +        E+R  + A       +         Q    RL+ EL  I
Sbjct: 807  VPIKDELYTPRMEG----ANEEIRELSYANARKLYGEDL------PQIVIDRLEKELKSI 856

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 857  IGNGFAVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCK 915

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 916  TSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 975

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 976  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYV-KGYLNDQGIHKRGAE---------- 1024

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1025 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1061

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1062 QYPADDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1118

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1119 KEVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1178

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I +    +  ++     +++Y         + +G   S A 
Sbjct: 1179 G-------TDVWLGNAQELIKTGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1223

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +  ++ K      +      I    +N +      +  ++      Y F K+HAAAY +
Sbjct: 1224 KIMESVRKGKGLTEE-----MIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVL 1273

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + A+  T+   + + I                             
Sbjct: 1274 MAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1333

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      +F +    +     ++ G+G   A+ I+EA 
Sbjct: 1334 VLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGETLIPPFISVPGLGENVAKRIVEAR 1393

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1394 DDGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1433



 Score = 88.3 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 396 GMEGMLVDDGVPIAYKPQDVVLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 453

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 454 DKFERFSNPHERLSETIINLTHITDDMLVDA------PEIEEVLTEFKEWVGDAIFVA 505


>gi|20807845|ref|NP_623016.1| DNA polymerase III PolC [Thermoanaerobacter tengcongensis MB4]
 gi|24418364|sp|Q8RA32|DPO3_THETN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|20516408|gb|AAM24620.1| DNA polymerase III alpha subunit, the Gram-positive type
            [Thermoanaerobacter tengcongensis MB4]
          Length = 1401

 Score =  226 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 157/941 (16%), Positives = 310/941 (32%), Gaps = 194/941 (20%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  +K    GI+        +   +++ M  +       V  + +LV   +G + L E+
Sbjct: 544  IKMLEKLQEIGIK-------SVSEINSVLMEREVDVKKLPVYHVTILVKDQKGLRNLYEI 596

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +SR  L +   ++ RI  S L ++  EGLI+ +    G + RA   N  +   + ++ F 
Sbjct: 597  ISRSNL-EFFHRTPRIPKSLLVKM-REGLIIGSACEQGEVFRALVSNLEEKKLEDIINFY 654

Query: 176  KLFGDRLYVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNSLFLS 221
                   Y+ +Q     +              +    ++ +L   +   +VAT +  FL 
Sbjct: 655  D------YLEIQPVGNNEFLIERGEVRSVEELKEINRKIYELGKKYNKLVVATGDVHFLD 708

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
              D     +LMA         KD  R  P ++      ++       EA     E+    
Sbjct: 709  PWDDVYRKILMAGK-----GYKDADRQPPLYFRTTEEMLMEFEYLGEEAA---REVVIEN 760

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
               +      +    E     + +  E ELR   +                     ++RL
Sbjct: 761  PNKIAEIVEDVKPIPEGTFPPVIEGAEEELRRITLEKAHEIYGDPL------PPIVQERL 814

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-- 399
            D ELN I    ++  ++I    +  + ++   VG  RGS   S+ A    IT+++PL   
Sbjct: 815  DRELNAIINNGYAVMYVIAQKLVSKSLQDGYLVG-SRGSVGSSLVATMSGITEVNPLPPH 873

Query: 400  ---------------------------------------FSLLFERFLNPDRMSMPDFDI 420
                                                   F + FE F+  +    PD D+
Sbjct: 874  YVCPKCKHSEFVTDGSFGCGVDMPDKYCPNCGTLMKKDGFDIPFEVFMGFEGDKEPDIDL 933

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  + +    RY +  +G   V +  T G+L  K A   V +  +              
Sbjct: 934  NFSGEYQPIAHRYTEELFGKGHVFRAGTIGTLADKTAYGYVKKYFE-------------- 979

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP-- 538
                                 R        +  ++    G+ R    H  G+++  +   
Sbjct: 980  --------------------ERNLTVHKSEIKRLTMGCTGIKRTTGQHPGGVMVVPKDKS 1019

Query: 539  LSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            +    P+ R   ++    +T           L+K D LG    T+++   D       K+
Sbjct: 1020 IYDFTPIQRPADAEDTDVITTHFDYHSLSGKLLKLDILGHDDPTVIRMLEDLTGVNARKI 1079

Query: 597  DLSLIPFDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
             L         T           L T  GTLG+ +  +  +RQ L   +P   ++++ + 
Sbjct: 1080 PLDDKKTMSLFTSVEALGIDPEELGTPVGTLGLPEFGTKFVRQMLIETRPTTFDELVRIS 1139

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             L                N ++ I      +  ++     +++Y         +  G   
Sbjct: 1140 GLSHG-------TDVWLNNAQDIIREGIATLKEVIAARDDIMLYL--------ISKGMDK 1184

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              +  +   + K      ++          K+G+      +  ++      Y F K+HA 
Sbjct: 1185 KLSFKIMENVRKGKGVTQEEI-----EEMKKHGVPDWFIQSCQKI-----KYMFPKAHAV 1234

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ-------------------- 807
            AY +++++ A+ K +YP  F A   T+  D+                             
Sbjct: 1235 AYVIMAFRIAYFKVYYPEAFYATYFTVRADDFNLDIVLGGKESIKRAIKEIEAKGNNATP 1294

Query: 808  -------------DARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHI 853
                         +     I+     +     + F + +  +   L +++GVG   A+ I
Sbjct: 1295 KEKNLLTVLEVALEMYLRGIKFTNVDLYRSDAEKFLITEEGLLPPLNSLEGVGIQAAKAI 1354

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             +   +  F S+EDF +R    ++++ V+E L   G L+  
Sbjct: 1355 AQERENGKFISIEDFRNRT---RVSKTVIEILKQYGCLEDL 1392



 Score = 84.8 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 35/86 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S L+   S   ++ + A     A+AITD   + +  E  + +   G++ I 
Sbjct: 303 VELHLHTQMSTLDAVPSATEVIKRAAEWGHKAVAITDHAVVQAFPEAMEASREYGVKVIY 362

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       +T + +       
Sbjct: 363 GMEGYMVDDGIPIVTGESEASLEGEF 388


>gi|323443912|gb|EGB01523.1| DNA polymerase III PolC [Staphylococcus aureus O46]
          Length = 1436

 Score =  226 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 157/922 (17%), Positives = 302/922 (32%), Gaps = 179/922 (19%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
              + N K++N+          + L+V   +G + L ++VS   L+    ++ RI  S L 
Sbjct: 591  HNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKIVSAS-LVKYFYRTPRIPRSLLD 649

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLY-----VNLQRHR 190
            E   EGL++ T    G +  A         EK    +   ++    LY       L R  
Sbjct: 650  EY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYDFIEIQPPALYQDLIDRELIRDT 708

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                    +++    T  +P++AT N+ +L E D  A  +L+A      +          
Sbjct: 709  ETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIARKILIASQPGNPL--NRSTLPEA 766

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                 +       F    +A E  V+     +  ++   PI         +        E
Sbjct: 767  HFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERVVPIKDELYTPRMEG----ANEE 822

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            +R  + A       +         Q    RL+ EL  I    F+  +LI    ++ +  +
Sbjct: 823  IRELSYANARKLYGEDL------PQIVIDRLEKELKSIIGNGFAVIYLISQRLVKKSLDD 876

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------- 399
               VG  RGS   S  A    IT+++PL                                
Sbjct: 877  GYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCKTSEFFNDGSVGSGFDLPDKTCE 935

Query: 400  ----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                        + FE FL      +PD D++F  + +     Y +  +G ++V +  T 
Sbjct: 936  TCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPNAHNYTKVLFGEDKVFRAGTI 995

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G++  K A   V +          R  +                                
Sbjct: 996  GTVAEKTAFGYV-KGYLNDQGIHKRGAE-------------------------------- 1022

Query: 510  RLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRSD---LPVTQFNMKWIE 564
             +  + +   G+ R    H  GI  V     +    P+             T F+   I 
Sbjct: 1023 -IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPADDQNSAWMTTHFDFHSIH 1081

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY-----------HLLT 613
               ++K D LG    T+++   D          + +   +  + +            +L 
Sbjct: 1082 D-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDDKEVMQIFSTPESLGVTEDEILC 1138

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              GT G+ +  +  +RQ LE  +P    +++ +  L                N +E I +
Sbjct: 1139 KTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG-------TDVWLGNAQELIKT 1191

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  ++     +++Y         + +G   S A  +  ++ K      +      I
Sbjct: 1192 GICDLSSVIGCRDDIMVYL--------MYAGLEPSMAFKIMESVRKGKGLTEE-----MI 1238

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
                +N +      +  ++      Y F K+HAAAY +++ + A+ K H+P+ + A+  T
Sbjct: 1239 ETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVLMAVRIAYFKVHHPLYYYASYFT 1293

Query: 794  LEMDNVEKIKK---------------------------------FCQDARQFNIQIMPPS 820
            +   + + I                                      +      ++ P S
Sbjct: 1294 IRASDFDLITMIKDKTSIRNTVKEMYSRYMDLGKKEKDVLTVLEIMNEMAHRGYRMQPIS 1353

Query: 821  VNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            +      +F +  + +     ++ G+G   A+ I+EA  D PF S ED   +     L++
Sbjct: 1354 LEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEARDDGPFLSKEDLNKKA---GLSQ 1410

Query: 880  RVLESLVFAGALDCFGYSRMQL 901
            +++E L   G+L      + QL
Sbjct: 1411 KIIEYLDELGSLPNL-PDKAQL 1431



 Score = 88.3 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 334 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 394 GMEGMLVDDGVPIAYKPQDVVLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 451

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 452 DKFERFSNPHERLSETIINLTHITDDMLVDA------PEIEEVLTEFKEWVGDAIFVA 503


>gi|291542732|emb|CBL15842.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus bromii
            L2-63]
          Length = 1452

 Score =  226 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 150/912 (16%), Positives = 281/912 (30%), Gaps = 172/912 (18%)

Query: 80   QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEI 139
             D       G          ++LV    G + L  L+S  +L +   +  RI  S L + 
Sbjct: 607  NDINTKIAGGDFKKLPTYHQIILVKNKTGLKNLYRLISYSHL-NYFYKKPRIPKSELVKY 665

Query: 140  GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ------------ 187
              EGLI+ +   +G +  A          K++ +F        Y+ +Q            
Sbjct: 666  -REGLIIGSACCAGQLYMAILEGKPWGELKQIASFYD------YLEIQPAGNNSFMIRDG 718

Query: 188  RHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            R    D   E    +++LA     P+ AT +  F+   D E   +LMA        +   
Sbjct: 719  RFNSVDELHEIDRTIIKLAKELGKPVCATCDVHFMDPTDSEFRKILMAGQ----GFKDAE 774

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             +                +    +A E  VE   + + + +   PI         +    
Sbjct: 775  QQAPLYFRTTAEMLKEFEWLGKDKAYEYVVENPNKIADMCEYIRPIPKGTFPPNIEG--- 831

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + +L +      + +            +  + RLD ELN I    FS  ++     + 
Sbjct: 832  -AQEQLIDITWKRAKEKYGDPL------PEIVKARLDKELNSITTYGFSVLYMTAQKLVA 884

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------------- 399
             ++ +   VG  RGS   S  A    I++++PL                           
Sbjct: 885  DSEAHGYLVG-SRGSVGSSFVATMSGISEVNPLCPHYVCPNCKHSEFITDGSYGSGFDMP 943

Query: 400  ---------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL      +PD D++F  + + +  RY +  +G   V 
Sbjct: 944  PKNCPECGTLMDQDGHEIPFETFLGFKGDKVPDIDLNFSGEYQSKSHRYTEELFGKNNVF 1003

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T  ++  K AL  V +                                  F + R  
Sbjct: 1004 KAGTISTVAEKTALGFVKK----------------------------------FAQERGL 1029

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFN 559
                     ++    G+ R    H  G+V+      +    P+         D   T F+
Sbjct: 1030 VMHKAEEKRLAIGCTGVKRTTGQHPGGMVVVPRTNDVYDFCPVQHPANDVNSDNITTHFD 1089

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
               I    + K D LG    T+         +    + +  +   D E   L T+   LG
Sbjct: 1090 FHSIHDT-ITKLDELGHDVPTIYH-----YLELYTGIPVMKVSMSDPEVMSLFTSPKALG 1143

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH-PLI 678
            +   E     +      P+C    +  + +         ++     +    +   +   +
Sbjct: 1144 V--TEEDIDSKTGTFSLPECGTSFVRGMLIEAQPKTFTDLLQIAGLSHGTDVWLGNAQEL 1201

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
                  T   +I     +    +  G     A  +   + K    +     E       +
Sbjct: 1202 IHNGTCTISEVIGTRDSIMTYLMHKGLEPGMAFKIMEIVRKGNATK--LLTEEHFKAMRE 1259

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            + + +    +  ++      Y F K+HAAAY + + +  W K H  VE+ AA  T+  +N
Sbjct: 1260 HNVPEWYIDSCMKI-----KYMFPKAHAAAYMIATLRLGWYKVHKAVEYYAAYFTVRSEN 1314

Query: 799  VE-----------------------------------KIKKFCQDARQFNIQIMPPSVNT 823
            ++                                   +  +   +     I+ +P  +  
Sbjct: 1315 LDGAIAMQGHQAVRDKMNNIKQKQSVHEATAKDEAEFQTLQIVNEMMARKIEFLPVDIYK 1374

Query: 824  PCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                 FKV D +I    +++ GVG   A  + E      + S+ED   +    K+ + V+
Sbjct: 1375 SEAKMFKVEDGKIRLPFSSLPGVGGAAADSLAETGKHTEYLSIEDMQIKT---KVTKAVI 1431

Query: 883  ESLVFAGALDCF 894
            E+L   G L   
Sbjct: 1432 ETLKDVGVLKDL 1443



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
           V L +H++ S ++   S  +++++       A+AITD     +  +  + A         
Sbjct: 345 VELHMHTNMSQMDAVTSAGDLVNRAYQWGHKAVAITDHGVAQAFPDAMKAADKINKDEEK 404

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           I+ I G +          +     T F    
Sbjct: 405 IKIIYGVEAYFMDDLVESVKGDADTGFDGTF 435


>gi|70726651|ref|YP_253565.1| DNA polymerase III PolC [Staphylococcus haemolyticus JCSC1435]
 gi|123660050|sp|Q4L5W6|DPO3_STAHJ RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|68447375|dbj|BAE04959.1| DNA polymerase III alpha chain PolC-type [Staphylococcus haemolyticus
            JCSC1435]
          Length = 1438

 Score =  226 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 162/944 (17%), Positives = 310/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+              N K++N+          + L+V T EG + L ++
Sbjct: 579  IKMVQQMKELGV--------TNHKDINQKLSNEDAYKRARPTHVTLIVQTQEGLKNLFKI 630

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EG+++ T    G +  A         EK    + 
Sbjct: 631  VSAS-LVKYYYRTPRIPRSLLNEY-REGILVGTACDEGELFTAVMQRDQSEVEKIAKYYD 688

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++   +LY       L R          ++++   +  +P++AT N+ +L E D  A 
Sbjct: 689  FIEVQPPKLYQDLIDRELIRDTETLYEIYERILKAGESTGIPVIATGNAHYLYEHDAIAR 748

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V+     +  ++  
Sbjct: 749  KILIASQPGNPL--NRSTLPEAHFRTTDEMLDEFHFLGEEKAHEIVVKNTNELADRIEKV 806

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI  +      D        E+R  +    +    +         Q    RL+ EL  I
Sbjct: 807  IPIKDQLFTPRMDG----ANEEIRELSYTNAKKLYGEDL------PQIVIDRLEKELASI 856

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                FS  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 857  IGNGFSVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCK 915

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 916  TSEFFDDGSVGSGFDLPDKQCSTCGAELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 975

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 976  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYV-KGYLNDQGIHKRGAE---------- 1024

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1025 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1061

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1062 QYPADDQSASWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1118

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1119 KETMQIFSSPESLGVTEEEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1178

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I S    +  ++     +++Y         + +G   S A 
Sbjct: 1179 G-------TDVWLGNAQELIRSGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAF 1223

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
                ++ K      +      I    +N +      +  ++      Y F K+HAAAY +
Sbjct: 1224 KTMESVRKGKGLTEE-----MIDAMKENNVPDWYLDSCLKI-----KYMFPKAHAAAYVL 1273

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + A+  T+   + + I                             
Sbjct: 1274 MAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKESIKNTVKDMYSRYMDLGKKEKD 1333

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      DF +  + +     ++ G+G   A+ I+EA 
Sbjct: 1334 VLTVLEIMNEMAHRGFRMQPISLEKSQAFDFIIEGDTLIPPFISVPGLGENVAKRIVEAR 1393

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1394 EDGPFLSKEDLNKKA---GLSQKIIEYLDDLGSLPNL-PDKAQL 1433



 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 14/179 (7%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G  +++  +++ A     AIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTSMSQMDGIPNISAYVNQAAKWGHKAIAVTDHNVVQAFPDAHGAAEKNGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++       + K    
Sbjct: 396 GMEGMLVDDGVPIAYKPTDRDLKEATYVVFDVET-TGLSNQYDQIIELA--AVKVKDGEI 452

Query: 131 ICL----SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
           I      S   E  +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 453 IDKFERFSNPHEKLSETIINLTHITDDMLTDA------PEIEEVLTEFKEWVGDAIFVA 505


>gi|323441043|gb|EGA98750.1| DNA polymerase III PolC [Staphylococcus aureus O11]
          Length = 1436

 Score =  226 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 159/951 (16%), Positives = 310/951 (32%), Gaps = 201/951 (21%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+       L+   + N K++N+          + L+V   +G + L ++
Sbjct: 577  IKMVQQMKELGV-------LN-HNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKI 628

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 629  VSAS-LVKYFYRTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYD 686

Query: 176  KLFGDRLYVNLQ----------RHRGYDRYRES----QVVQLAYTHELPLVATNNSLFLS 221
                   ++ +Q          R    D         +++    T  +P++AT N+ +L 
Sbjct: 687  -------FIEIQPPALYQDLIDRGLIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLF 739

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            E D  A  +L+A      +               +       F    +A E  V+     
Sbjct: 740  EHDGIARKILIASQPGNPL--NRSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNEL 797

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            +  ++   PI         +        E+R  + A       +         Q    RL
Sbjct: 798  ADRIERVVPIKDELYTPRMEG----ANEEIRELSYANARKLYGEDL------PQIVIDRL 847

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-- 399
            + EL  I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL   
Sbjct: 848  EKELKSIIGNGFAVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPH 906

Query: 400  ---------------------------------------FSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL      +PD D+
Sbjct: 907  YICPNCKTSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDL 966

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  + +     Y +  +G ++V +  T G++  K A   V +          R  +   
Sbjct: 967  NFSGEYQPNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYV-KGYLNDQGIHKRGAE--- 1022

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRP 538
                                          +  + +   G+ R    H  GI  V     
Sbjct: 1023 ------------------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMD 1052

Query: 539  LSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+             T F+   I    ++K D LG    T+++   D        
Sbjct: 1053 IYDFTPIQYPADDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDP 1109

Query: 596  VDLSLIPFDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
              + +   +  + +            +L   GT G+ +  +  +RQ LE  +P    +++
Sbjct: 1110 KTIPVDDKEVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELV 1169

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
             +  L                N +E I +    +  ++     +++Y         + +G
Sbjct: 1170 QISGLSHG-------TDVWLGNAQELIKTGICDLSSVIGCRDDIMVYL--------MYAG 1214

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
               S A  +  ++ K      +      I    +N +      +  ++      Y F K+
Sbjct: 1215 LEPSMAFKIMESVRKGKGLTEE-----MIETMKENEVPDWYLDSCLKI-----KYMFPKA 1264

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK-------------------- 804
            HAAAY +++ + A+ K H+P+ + A+  T+   + + I                      
Sbjct: 1265 HAAAYVLMAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKEMYSRYMD 1324

Query: 805  -------------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTA 850
                            +      ++ P S+      +F +  + +     ++ G+G   A
Sbjct: 1325 LGKKEKDVLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVA 1384

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            + I+EA  D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1385 KRIVEARDDGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1431



 Score = 88.3 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 334 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 394 GMEGMLVDDGVPIAYKPQDVVLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 451

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 452 DKFERFSNPHERLSETIINLTHITDDMLVDA------PEIEEVLTEFKEWVGDAIFVA 503


>gi|322806689|emb|CBZ04258.1| DNA polymerase III alpha subunit [Clostridium botulinum H04402 065]
          Length = 1432

 Score =  226 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 149/905 (16%), Positives = 285/905 (31%), Gaps = 189/905 (20%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  +++L   A G + L +LVS+  L +   +  R+  S + E   EGLI+ +   +
Sbjct: 603  KEPTYHLIILAKNAVGLKNLYKLVSKSNL-EYFFKRPRMAKSLINEY-KEGLIIGSACEA 660

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRES 198
            G I +      ++   K ++ F        Y+ +Q     +              +    
Sbjct: 661  GQIYKEILKGKTKEELKNMIDFYD------YLEIQPLGNNEFLVKNGSVKDEKELQEINK 714

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++ +L   +  P+VAT +  FL EE +E    ++        +    P          + 
Sbjct: 715  KICELGEFYNKPVVATCDVHFLDEE-HEVFRRILMSGQGFSDADNQPPLYFRTTEEMLKE 773

Query: 259  EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
                             E+    +  +      +    E+      +  E ++R   +  
Sbjct: 774  FEYLGEE-------KAKEVVIYNTNKIADMIDEIKPIPEETFPPKIEGAEEDIRRMTIEK 826

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
                            +   +RL  ELN I    ++  +LI    +  + ++   VG  R
Sbjct: 827  AHSIYGDPL------PEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SR 879

Query: 379  GSGAGSVTAYALTITDIDPLR--------------------------------------- 399
            GS   S  A    IT+++ L                                        
Sbjct: 880  GSVGSSFAATMSDITEVNGLPPHYVCPKCKYSEFFTDGSVGSGADLEDKDCPNCGTKLIK 939

Query: 400  --FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
                + FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A
Sbjct: 940  DGHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTA 999

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
               V + L                                    +    +   +  +S+ 
Sbjct: 1000 YGFVKKYLD----------------------------------EKNIKANNAEIERLSKG 1025

Query: 518  LEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFD 572
              G+ R +  H  GI  V  D  +    P+         D+  T F+   I    L+K D
Sbjct: 1026 CTGVKRTSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSI-SGRLLKLD 1084

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQL 623
             LG    T+L+   D        V L         T           +    GT G+ + 
Sbjct: 1085 ILGHDDPTVLRMLQDLTQVDPKSVPLGDPKVISLFTSPEALGVTEEDIDCPVGTYGLPEF 1144

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +RQ L   +P    +++ +  L          V+ N      K             
Sbjct: 1145 GTKFVRQMLLDTKPKSFAELVRISGLSH-----GTDVWLNNAQYFIKEGYT--------- 1190

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
              +  I  ++ +M             A  +   + K      +++     +   ++ +  
Sbjct: 1191 TIKDCISTRDDIMVYLLQ-KELPPKSAFTIMEKVRKGKGLTEEQE-----ALMKEHDVPD 1244

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--- 800
                +  ++      Y F K HA AY +++ + A+ K +YP  + A   ++  D+ +   
Sbjct: 1245 WYIESCKKI-----KYMFPKGHAVAYVMMAMRIAYFKVYYPRAYYATYFSVRADDFDADL 1299

Query: 801  ------------------------------KIKKFCQDARQFNIQIMPPSVNTPCV-DFK 829
                                           I + C +  +  I+ +   +       F 
Sbjct: 1300 IVKGEEKIKEKMNELYAMGNNITQKDKGLLTILEICYEMYKRGIKFLKVDLYKSNATKFL 1359

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +  + I   L+A++GVG   A+ I EA  +  F S ED   R    K+ + V+E+L   G
Sbjct: 1360 IEGDSIRPPLSALQGVGKNAAKSIEEARLEGEFISKEDLRLRT---KVTKTVIETLENHG 1416

Query: 890  ALDCF 894
             L   
Sbjct: 1417 CLRGM 1421



 Score = 97.6 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 34/86 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++G   ++ ++ + A     A+AITD   + +  +    A    I+ I 
Sbjct: 333 VELHMHSQMSAMDGMTPVSELVKRAAKWGHKAVAITDHGVVQAYPDAMSAAKKGNIKVIY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       ++  G        
Sbjct: 393 GIEAYLVDDGVPIVSKAGDKTIEDTF 418


>gi|331269632|ref|YP_004396124.1| DNA polymerase III subunit alpha [Clostridium botulinum BKT015925]
 gi|329126182|gb|AEB76127.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum BKT015925]
          Length = 1443

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 159/904 (17%), Positives = 296/904 (32%), Gaps = 190/904 (21%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                +++L     G + L +L+S   L D   +  R+  S +++   EGLI+ +   +G 
Sbjct: 617  PTYHLIILAKNQVGLKNLYKLISYSNL-DYFFRKPRMPKSLIEQY-KEGLIIGSACEAGE 674

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQV 200
            + +A     SQ   K+++ F        Y+ +Q     +              +    ++
Sbjct: 675  VYKAVLEGKSQEELKQMIKFYN------YLEIQPIMNNEFMLKKGIVKSEEQLKEVNRKI 728

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
              L   + LP+VAT +  FL  +D +  ++LM        S  +              + 
Sbjct: 729  YNLGKENGLPVVATGDVHFLDPKDAKFREILM---KGQGFSDAEDQPPLYLKTTNEMLKE 785

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
                 D         E+       +     ++    ++      +  E ++RN  +    
Sbjct: 786  FQYLGDD-----ACKEVVIYNPQKIAEEVEVVKPIPDETFPPKIEGAEEDIRNMTLEKAY 840

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                  +I      +    RL+ ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 841  ------SIYGNPLPKVVHDRLEKELNSIINNGYAVLYLIAHKLVAKSLKDGYLVG-SRGS 893

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++ L                                          
Sbjct: 894  VGSSLVATMSDITEVNGLPPHYVCPNCKNSEFFTDGSVSSGADLPPKKCPNCGDEYNRNG 953

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + FE FL  +    PD D++F  D + ++ RY +  +G     +  T G++  K A  
Sbjct: 954  HDIPFETFLGFNGDKEPDIDLNFSGDNQGDIHRYTEVLFGKGHTFKAGTIGTIADKTAYG 1013

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V + L                                    +    S   +  ++Q   
Sbjct: 1014 FVKKYLD----------------------------------EKNLIVSQAEVERLTQGCT 1039

Query: 520  GLYRHASTHAAGI--VIGDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R +  H  GI  V  D  +    P+     D  SD+  T F+   I    L+K D L
Sbjct: 1040 GVKRTSGQHPGGIMVVPSDNEIYNFCPIQHPADDSNSDIITTHFDYHSI-SGRLLKLDIL 1098

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQLES 625
            G    T+L+   D      + + +         T           L    G  GI +  +
Sbjct: 1099 GHDDPTVLRMLKDTTGLDPITIPIGDEKVLSLFTSPEALGITEEELECPVGCYGIPEFGT 1158

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
              +RQ L   QP    D++ +  L          V+ N      K       +   +   
Sbjct: 1159 KFVRQMLVDTQPKTFSDLVRISGLSH-----GTDVWLNNAQYFIKEGYT--TLKDCIATR 1211

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
              +++Y         L  G    EA  +   + K      +       +   ++ +    
Sbjct: 1212 DDIMVYL--------LHKGLPPKEAFTIMEKVRKGKGLTEE-----HEALMREHKVPDWY 1258

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL----------- 794
              +  ++      Y F K HA AY +++ + A+ K +YP  + A   T+           
Sbjct: 1259 IESCKKI-----KYMFPKGHAVAYVMMAVRIAYYKVYYPQAYYATYFTVRGIDDFDADLI 1313

Query: 795  ------EMDNVEKIKKFCQ-----------------DARQFNIQIMPPSVNT-PCVDFKV 830
                      +++I                      +  + NI+ +   V       F +
Sbjct: 1314 VKGEDVVKRKMDEINALGNNVTQKDKGLLTNLELAFEMYKRNIKFLKVDVYKSHPTKFLI 1373

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             ++ I   ++++ GVGT  A+ I EA  +  F S ED   R    K+++ V+E+L   G 
Sbjct: 1374 ENDDIRPPISSLAGVGTNAAKSIAEAREEGEFISKEDLRKR---SKVSKTVVEALSEHGC 1430

Query: 891  LDCF 894
            L   
Sbjct: 1431 LKGL 1434



 Score = 99.9 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 37/86 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++G  S  +++++ A    PA+AITD   + +  +    A    I+ I 
Sbjct: 345 VELHLHTQMSAMDGMSSAKSLIERAAKWGHPAVAITDHGVVQAYPDAMDAAKKYNIKIIY 404

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       +TN  +       
Sbjct: 405 GVEAYLVNDGVPIVTNVREQTINDTF 430


>gi|312876753|ref|ZP_07736732.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor lactoaceticus
            6A]
 gi|311796484|gb|EFR12834.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor lactoaceticus
            6A]
          Length = 1402

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 145/891 (16%), Positives = 283/891 (31%), Gaps = 187/891 (20%)

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
                +LV   +G + L +LVS  +L +   +  RI  S L ++  +GL++ +   SG I 
Sbjct: 579  YHATILVKNQQGLKNLYKLVSYSHL-EYFYKRPRIPKSLLIQL-KDGLLIGSACESGEIF 636

Query: 157  RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--------------HRGYDRYRESQVVQ 202
            RAF    S+   +++  F        ++ +                     R    ++  
Sbjct: 637  RAFLEGKSEEEIEKIAAFYD------FLEIMPVENNSFLIREGYLKDEEDLREINKKIYN 690

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
            L       +VAT+++ +          +        +   +    V  D  L  R+    
Sbjct: 691  LGKKLGKLVVATSDAHYCHPHQRVLRQI--------LKHNQGYNDVENDPQLYFRTTDEM 742

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
            +        +   E+    +  +      +    ++         E E+ N  +      
Sbjct: 743  LKEFEYLGKDACYEVVVENTNKIADMIEDVKPVPDETFPPKIDGAEEEIYNMTMKKAHEI 802

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                        +  + RL+ ELN I +  F+  +LI    +  +  +   VG  RGS  
Sbjct: 803  YGDPL------PEIVKARLEKELNSIIKNGFAVMYLIAQKLVSKSLSDGYLVG-SRGSVG 855

Query: 383  GSVTAYALTITDIDPLR-----------------------------------------FS 401
             S+ A    IT+++PL                                            
Sbjct: 856  SSLVATMCGITEVNPLPPHYVCPNCKYSEFVTDGSVGCGYDLEDKNCPRCGEKLKKDGHD 915

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            + FE FL  D    PD D++F  D +    ++ +  +G   V +  T  ++  K A   V
Sbjct: 916  IPFETFLGFDGDKEPDIDLNFSGDYQPIAHKFTEELFGQGYVFRAGTISTVAEKTAHGFV 975

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
             +                                    E +  +     +L +SQ   G+
Sbjct: 976  TKY----------------------------------AEEKGLNLHPAEILRLSQGCTGV 1001

Query: 522  YRHASTHAAGIVIGDRP--LSQLVPMYRDVRSDL--PVTQFNMKWIEKAGLIKFDFLGLK 577
             R    H  G++I  R   +    P+     S     +T           L+K D LG  
Sbjct: 1002 KRTTGQHPGGLMIVPRDKEIFDFTPIQHPADSGDKSVITTHFDYHAISGRLLKLDILGHD 1061

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQLESSGM 628
              T+++   D        + L         T           +    GT GI +  +  +
Sbjct: 1062 DPTVIRMLQDLTGVDPRSIPLDDKATMSIFTSTEALGISPEDIDCEVGTFGIPEFGTRFV 1121

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            RQ L   +P    +++ +  L   G         +       + +    +  ++     +
Sbjct: 1122 RQMLIETKPKTFAELVRISGLSH-GTNVWTNNAQDL------VRNGIATLKEVISTRDDI 1174

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++Y  Q         G    ++  +   + K    + + ++             +    +
Sbjct: 1175 MLYLIQ--------KGVPPKDSFRIMEDVRKGKGLKPEDEQLIR----------EHNVPD 1216

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK------- 801
             +    K   Y F K+HAAAY +++++ A+ K HY   F A   T+  D+ +        
Sbjct: 1217 WYIESCKKITYMFPKAHAAAYVMMAFRIAYFKVHYKEAFYATYFTVRADDFDYATILKGR 1276

Query: 802  --------------------------IKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNR 834
                                      + +   +     ++  P  +N    + F + D  
Sbjct: 1277 DAIRQKIRDLENRISSLSQKDKNLLTVLEIANEMLARGLKFYPVDLNESDAERFIIKDGG 1336

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            +     A+  VG   A+ I+EA  +  F S++D   R    KLN++V+E L
Sbjct: 1337 LLIPFNALPNVGVAAAKSIVEARKEGKFLSVDDLIRRA---KLNKQVIEIL 1384



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 37/96 (38%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             S   V L  H+  S ++   S   ++   A+    A+AITD   + +  E  + + + 
Sbjct: 298 TSSSKRVELHAHTKMSAMDAVCSAEELIKLAASMGHRAVAITDHGVVQAFPEAQEASKSC 357

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
            I+ I G +  +       + N  +        +V+
Sbjct: 358 NIKVIYGMECYLIDDGVPVVYNPKEGQGFDSTFVVV 393


>gi|170754900|ref|YP_001781966.1| DNA polymerase III PolC [Clostridium botulinum B1 str. Okra]
 gi|169120112|gb|ACA43948.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum B1 str. Okra]
          Length = 1432

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 148/905 (16%), Positives = 284/905 (31%), Gaps = 189/905 (20%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  +++L   A G + L +LVS+  L +   +  R+  S + E   EGLI+ +   +
Sbjct: 603  KEPTYHLIILAKNAVGLKNLYKLVSKSNL-EYFFKRPRMAKSLINEY-KEGLIIGSACEA 660

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRES 198
            G I +      ++   K ++ F        Y+ +Q     +              +    
Sbjct: 661  GQIYKEILKGKTKEELKNMINFYD------YLEIQPLGNNEFLVKNGSVKDEKELQEINK 714

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++ +L   +  P+VAT +  FL EE +E    ++        +    P          + 
Sbjct: 715  KICELGEFYNKPVVATCDVHFLDEE-HEVFRRILMSGQGFSDADNQPPLYFRTTEEMLKE 773

Query: 259  EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
                             E+    +  +      +    E+      +  E ++R   +  
Sbjct: 774  FEYLGEE-------KAKEVVIHNTNKIADMIDEIKPIPEETFPPKIEGAEEDIRRMTIEK 826

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
                            +   +RL  ELN I    ++  +LI    +  + ++   VG  R
Sbjct: 827  AHAIYGDPL------PEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SR 879

Query: 379  GSGAGSVTAYALTITDIDPLR--------------------------------------- 399
            GS   S  A    IT+++ L                                        
Sbjct: 880  GSVGSSFAATMSDITEVNGLPPHYVCPKCKYSEFFTDGSVGSGADLEDKDCPNCGTKLIK 939

Query: 400  --FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
                + FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A
Sbjct: 940  DGHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTA 999

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
               V + L                                    +    +   +  +S+ 
Sbjct: 1000 YGFVKKYLD----------------------------------EKNIKANNAEIERLSKG 1025

Query: 518  LEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFD 572
              G+ R +  H  GI  V  D  +    P+         D+  T F+   I    L+K D
Sbjct: 1026 CTGVKRTSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSI-SGRLLKLD 1084

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQL 623
             LG    T+L+   D        V L         T           +    GT G+ + 
Sbjct: 1085 ILGHDDPTVLRMLQDLTQVDPKSVPLGDPKVISLFTSPKALGVTEEDIDCPVGTYGLPEF 1144

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +RQ L   +P    +++ +  L          V+ N      K             
Sbjct: 1145 GTKFVRQMLLDTKPKSFAELVRISGLSH-----GTDVWLNNAQYFIKEGYT--------- 1190

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
              +  I  ++ +M             A  +   + K      +++     +   ++ +  
Sbjct: 1191 TIKDCISTRDDIMVYLLQ-KELPPKSAFTIMEKVRKGKGLTEEQE-----ALMKEHDVPD 1244

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--- 800
                +  ++      Y F K HA AY +++ + A+ K +YP  + A   ++  D+ +   
Sbjct: 1245 WYIESCKKI-----KYMFPKGHAVAYVMMAMRIAYFKVYYPRAYYATYFSVRADDFDADL 1299

Query: 801  ------------------------------KIKKFCQDARQFNIQIMPPSVNTPCV-DFK 829
                                           I +   +  +  I+ +   +       F 
Sbjct: 1300 IVKGEEKIKEKMNELYAMGNNITQKDKGLLTILEISYEMYKREIKFLKVDLYKSNATKFL 1359

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +  + I   L+A++GVG   A+ I EA  +  F S ED   R    K+ + V+E+L   G
Sbjct: 1360 IEGDSIRPPLSALQGVGKNAAKSIEEARLEGEFISKEDLRLRT---KVTKTVIETLENHG 1416

Query: 890  ALDCF 894
             L   
Sbjct: 1417 CLRGM 1421



 Score = 97.6 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 34/86 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++G   ++ ++ + A     A+AITD   + +  +    A    I+ I 
Sbjct: 333 VELHMHSQMSAMDGMTPVSELVKRAAKWGHKAVAITDHGVVQAYPDAMSAAKKGNIKVIY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       ++  G        
Sbjct: 393 GIEAYLVDDGVPIVSKAGDKTIEDTF 418


>gi|282916524|ref|ZP_06324282.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus D139]
 gi|283770328|ref|ZP_06343220.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
            H19]
 gi|282319011|gb|EFB49363.1| DNA polymerase III, alpha subunit [Staphylococcus aureus subsp.
            aureus D139]
 gi|283460475|gb|EFC07565.1| DNA polymerase III polC-type [Staphylococcus aureus subsp. aureus
            H19]
          Length = 1438

 Score =  226 bits (576), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 160/944 (16%), Positives = 310/944 (32%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+       L+   + N K++N+          + L+V   +G + L ++
Sbjct: 579  IKMVQQMKELGV-------LN-HNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKI 630

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 631  VSAS-LVKYFYRTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYD 688

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    T  +P++AT N+ +L E D  A 
Sbjct: 689  FIEIQPPALYQDLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIAR 748

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V+     +  ++  
Sbjct: 749  KILIASQPGNPL--NRSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERV 806

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI         +        E+R  + A       +         Q    RL+ EL  I
Sbjct: 807  VPIKDELYTPRMEG----ANEEIRELSYANARKLYGEDL------PQIVIDRLEKELKSI 856

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 857  IGNGFAVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCK 915

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 916  TSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 975

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 976  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYV-KGYLNDQGIHKRGAE---------- 1024

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1025 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1061

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1062 QYPADDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1118

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1119 KEVMQIFSTPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1178

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E I +    +  ++     +++Y         + +G   S A 
Sbjct: 1179 G-------TDVWLGNAQELIKTGICDLSSVIGCRDDIMVYL--------MYAGLEASMAF 1223

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +  ++ K      +      I    +N +      +  ++      Y F K+HAAAY +
Sbjct: 1224 KIMESVRKGKGLTEE-----MIETMKENEVPDWYLDSCLKI-----KYMFPKAHAAAYVL 1273

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + A+  T+   + + I                             
Sbjct: 1274 MAVRIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKD 1333

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA 
Sbjct: 1334 VLTVLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEAR 1393

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             D PF S ED   +     L+++++E L   G+L      + QL
Sbjct: 1394 DDGPFLSKEDLNKKA---GLSQKIIEYLDELGSLPNL-PDKAQL 1433



 Score = 87.9 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 396 GMEGMLVDDGVPIAYKPQDVVLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 453

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 454 DKFERFSNPHERLSETIINLTHITDDMLVDA------PEIEEVLTEFKEWVGDAIFVA 505


>gi|217961238|ref|YP_002339806.1| DNA polymerase III PolC [Bacillus cereus AH187]
 gi|229140459|ref|ZP_04269014.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26]
 gi|229197928|ref|ZP_04324644.1| DNA polymerase III polC-type [Bacillus cereus m1293]
 gi|217065194|gb|ACJ79444.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus AH187]
 gi|228585646|gb|EEK43748.1| DNA polymerase III polC-type [Bacillus cereus m1293]
 gi|228643020|gb|EEK99296.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST26]
          Length = 1433

 Score =  226 bits (576), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 155/923 (16%), Positives = 297/923 (32%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L+ ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLNPEDAMYRKILVSSQGGA-- 754

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                     P  + +   EM+  FS L E  +   EI    +  +      +    +   
Sbjct: 755  -NPLNRHSLPPVHFRTTDEMLECFSFLGE--DVAKEIVVTNTQKIASLIGDVHPVKDDLY 811

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 812  TPKIEGADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEDMKSNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      DF +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGEFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIAITD     S  E       AGI+ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAITDHAVAQSFPEAYSAGKKAGIKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 421


>gi|226949776|ref|YP_002804867.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum A2 str. Kyoto]
 gi|226841257|gb|ACO83923.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum A2 str. Kyoto]
          Length = 1432

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 148/905 (16%), Positives = 283/905 (31%), Gaps = 189/905 (20%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  +++L   A G + L +LVS+  L +   +  R+  S + E   EGLI+ +   +
Sbjct: 603  KEPTYHLIILAKNAVGLKNLYKLVSKSNL-EYFFKRPRMAKSLINEY-KEGLIIGSACEA 660

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRES 198
            G I +      ++   K ++ F        Y+ +Q     +                   
Sbjct: 661  GQIYKEILKGKTKEELKNMIDFYD------YLEIQPLGNNEFLVRNGSVKDEKELEEINK 714

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++ +L   +  P+VAT +  FL EE +E    ++        +    P          + 
Sbjct: 715  KICELGEFYNKPVVATCDVHFLDEE-HEVFRRILMSGQGFSDADNQPPLYFRTTEEMLKE 773

Query: 259  EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
                             E+    +  +      +    E+      +  E ++R   +  
Sbjct: 774  FEYLGEE-------KAKEVVIYNTNKIADMIDEIKPIPEETFPPKIEGAEEDIRRMTIEK 826

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
                            +   +RL  ELN I    ++  +LI    +  + ++   VG  R
Sbjct: 827  AHAIYGDPL------PEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SR 879

Query: 379  GSGAGSVTAYALTITDIDPLR--------------------------------------- 399
            GS   S  A    IT+++ L                                        
Sbjct: 880  GSVGSSFAATMSDITEVNGLPPHYVCPKCKYSEFFTDGSVGSGADLEDKDCPNCGTKLIK 939

Query: 400  --FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
                + FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A
Sbjct: 940  DGHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTA 999

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
               V + L                                    +    +   +  +S+ 
Sbjct: 1000 YGFVKKYLD----------------------------------EKNIKANNAEIERLSKG 1025

Query: 518  LEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFD 572
              G+ R +  H  GI  V  D  +    P+         D+  T F+   I    L+K D
Sbjct: 1026 CTGVKRTSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSI-SGRLLKLD 1084

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQL 623
             LG    T+L+   D        V L         T           +    GT G+ + 
Sbjct: 1085 ILGHDDPTVLRMLQDLTQVDPKSVPLGDPKVISLFTSPKALGVTEEDIDCPVGTYGLPEF 1144

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +RQ L   +P    +++ +  L          V+ N      K             
Sbjct: 1145 GTKFVRQMLLDTKPKSFAELVRISGLSH-----GTDVWLNNAQYFIKEGYT--------- 1190

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
              +  I  ++ +M             A  +   + K      +++     +   ++ +  
Sbjct: 1191 TIKDCISTRDDIMVYLLQ-KELPPKSAFTIMEKVRKGKGLTEEQE-----ALMKEHDVPD 1244

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--- 800
                +  ++      Y F K HA AY +++ + A+ K +YP  + A   ++  D+ +   
Sbjct: 1245 WYIESCKKI-----KYMFPKGHAVAYVMMAMRIAYFKVYYPRAYYATYFSVRADDFDADL 1299

Query: 801  ------------------------------KIKKFCQDARQFNIQIMPPSVNTPCV-DFK 829
                                           I +   +  +  I+ +   +       F 
Sbjct: 1300 IVKGEEKIKEKMNELYAMGNNITQKDKGLLTILEISYEMYKRGIKFLKVDLYKSNATKFL 1359

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +  + I   L+A++GVG   A+ I EA  +  F S ED   R    K+ + V+E+L   G
Sbjct: 1360 IEGDSIRPPLSALQGVGKNAAKSIEEARLEGEFISKEDLRLRT---KVTKTVIETLENHG 1416

Query: 890  ALDCF 894
             L   
Sbjct: 1417 CLRGM 1421



 Score = 99.5 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 35/86 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++G   ++ ++ + A     A+AITD   + +  +    A  + I+ I 
Sbjct: 333 VELHMHSQMSAMDGMTPVSELVKRAAKWGHKAVAITDHGVVQAYPDAMSAAKKSNIKVIY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       ++  G        
Sbjct: 393 GIEAYLVDDGVPIVSKAGDKTIEDTF 418


>gi|222097262|ref|YP_002531319.1| DNA polymerase iii polc [Bacillus cereus Q1]
 gi|221241320|gb|ACM14030.1| DNA polymerase III, alpha subunit [Bacillus cereus Q1]
          Length = 1433

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 155/923 (16%), Positives = 298/923 (32%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             ++LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMILLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L+ ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLNPEDAMYRKILVSSQGGA-- 754

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                     P  + +   EM+  FS L E  +   EI    +  +      +    +   
Sbjct: 755  -NPLNRHSLPPVHFRTTDEMLECFSFLGE--DVAKEIVVTNTQKIASLIGDVHPVKDDLY 811

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 812  TPKIEGADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEDMKSNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      DF +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGEFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIAITD     S  E       AGI+ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAITDHAVAQSFPEAYSAGKKAGIKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 421


>gi|228916455|ref|ZP_04080021.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            pulsiensis BGSC 4CC1]
 gi|228843034|gb|EEM88116.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            pulsiensis BGSC 4CC1]
          Length = 1433

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 155/923 (16%), Positives = 296/923 (32%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDIGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGGA-- 754

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                     P  + +   EM+  FS L E  +   EI    +  +      +    +   
Sbjct: 755  -NPLNRHSLPPVHFRTTDEMLECFSFLGE--DVAKEIVVTNTQKIASLIGDVHPVKDDLY 811

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 812  TPKIEGADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPACNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEDMKSNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      DF +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGEFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 77.1 bits (188), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTSVSRLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 421


>gi|323464622|gb|ADX76775.1| DNA polymerase III, alpha subunit, Gram-positive type [Staphylococcus
            pseudintermedius ED99]
          Length = 1435

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 153/920 (16%), Positives = 298/920 (32%), Gaps = 197/920 (21%)

Query: 80   QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEI 139
              N K++N+          + L+V    G + L ++VS   L+    ++ RI  S L E 
Sbjct: 593  DINKKLSNEDAYKRARPQHVTLIVQNQTGLKNLFKIVSAS-LVQYYYRTPRIPRSLLDE- 650

Query: 140  GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ------------ 187
              EGL++ T    G +  A         E+    +        Y+ +Q            
Sbjct: 651  HREGLLVGTACDEGEVFTAVMQRDQSEVERIAKYYD-------YIEVQPPALYQDLLDRD 703

Query: 188  --RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              R          +++++  T+++P++AT N+ +L E D  A  +L+A      +     
Sbjct: 704  LIRDNETLVEIYERILKVGETNQIPVIATGNAHYLHEHDAIARRILIASQPGNPL--NRS 761

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                      +       F     A +  VE  R  +  ++   PI  +      +    
Sbjct: 762  TLPEAHFRTTDEMLDAFHFLGEERAHQIVVENTRALAERIEKVVPIKDKLYTPNMEG--- 818

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                E+R  +    +    +         Q    RL+ EL  I    F+  +LI    ++
Sbjct: 819  -ANEEIREMSYRHAKQLYGE------ELPQIVIDRLEKELESIIGNGFAVIYLISQRLVK 871

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------------- 399
             + ++   VG  RGS   S  A    IT+++PL                           
Sbjct: 872  KSLEDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPSCKKSEFFDDGSVGSGFDLP 930

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL      +PD D++F  + + +   Y +  +G E V +
Sbjct: 931  DKTCECGTEMIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPKAHNYTKVLFGEEYVYR 990

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V +          R  +                            
Sbjct: 991  AGTIGTVAEKTAFGFV-KGYLNDQGIHKRGAE---------------------------- 1021

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRSD---LPVTQFNM 560
                 +  + +   G+ R    H  GI+       +    P+             T F+ 
Sbjct: 1022 -----VDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIFDFTPIQYPADDQSSSWMTTHFDF 1076

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY----------- 609
              I    ++K D LG    T+++   D          + +        +           
Sbjct: 1077 HSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDDQQTMRIFSSPEALGVTEE 1133

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             +L   GT G+ +  +  +RQ LE  +P    +++ +  L                N +E
Sbjct: 1134 EILAKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG-------TDVWLGNAQE 1186

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I S    +   +     +++Y         + +G   S A  +  A+ K      +   
Sbjct: 1187 LIRSGTCTLSSCIGCRDDIMVYL--------MYAGLEPSLAFKIMEAVRKGKGLTEE--- 1235

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              F     +N +      +  ++      Y F K+HAAAY +++ + A+ K H+P+ + A
Sbjct: 1236 --FEQVMKENNVPDWYMDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHHPLYYYA 1288

Query: 790  ASMTLEMDNVEKIKK---------------------------------FCQDARQFNIQI 816
            +  T+   + + I                                      +      ++
Sbjct: 1289 SYFTVRASDFDLITMVKDKDSIRQTVKDMYARYMDLGKKEKDVLTVLEIMNEMAHRGYRM 1348

Query: 817  MPPSVNT-PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
             P ++      +F +  + +     A+ G+G   A+ I+EA  + PF S ED   +    
Sbjct: 1349 QPVNLEKSQAYEFIIEGDTLIPPFVAVPGLGENVAKRIVEAREEGPFLSKEDLNKKA--- 1405

Query: 876  KLNRRVLESLVFAGALDCFG 895
             ++++++E L      D  G
Sbjct: 1406 GVSQKIIEYL------DSLG 1419



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G   + + + + A     AIA+TD N + +  +    A   GI+ I 
Sbjct: 334 VEFHLHTSMSQMDGVTHIGDYVAQAAQWGHDAIAVTDHNVVQAYPDAHAAAEKHGIKMIY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G +  +                     +V 
Sbjct: 394 GMEGMLVDDGVPIAYKPSDIMLQDATYVVF 423


>gi|330982627|gb|EGH80730.1| error-prone DNA polymerase [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 325

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 81/366 (22%), Positives = 140/366 (38%), Gaps = 44/366 (12%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +     +  L   S++S   GA S   + ++       A+AITD   L   +   Q + +
Sbjct: 1   MTSE--YAELHCLSNFSFQRGASSARELFERAVRHGYKALAITDECTLAGIVRAWQASKS 58

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+  I+G ++ I+                  P +VLLV    GY+ L  L++      +
Sbjct: 59  TGLPLIVGSEMHIENG----------------PKVVLLVENQAGYEALCTLITVARRRAK 102

Query: 125 GKQSVRICLSWLQEIGTEGLIML-TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            K   R+      E   +GL+ L      G                     ++ F +RL+
Sbjct: 103 -KGEYRVLREDF-EPAPDGLLALWLPDLDGDAQACLAGGR---------WLRERFTERLW 151

Query: 184 VNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV-S 241
           + +  HRG  D  R + ++ LA +  +P VA+ +    +       D + A+ H T V  
Sbjct: 152 LGVGLHRGPDDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTTVAE 211

Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                    + +L+    +   + D   A   +V IARRC+F L       P  +  +  
Sbjct: 212 AGHLLFANGERHLRPLDALSEHYPDWLLA--ESVRIARRCTFDLGDLKYEYPHELVPKG- 268

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              +   + LR     G+  R   G           R +++ EL +IA  KF  YFL V 
Sbjct: 269 ---QTSTSWLRELTERGVRRRWPGGL------TPATRAQVEKELALIAEKKFDSYFLTVH 319

Query: 362 DFIQWA 367
           D +++A
Sbjct: 320 DIVEFA 325


>gi|312793079|ref|YP_004026002.1| DNA polymerase III subunit alpha [Caldicellulosiruptor kristjanssonii
            177R1B]
 gi|312180219|gb|ADQ40389.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
            kristjanssonii 177R1B]
          Length = 1402

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 145/891 (16%), Positives = 283/891 (31%), Gaps = 187/891 (20%)

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
                +LV   +G + L +LVS  +L +   +  RI  S L ++  +GL++ +   SG I 
Sbjct: 579  YHATILVKNQQGLKNLYKLVSYSHL-EYFYKRPRIPKSLLIQL-KDGLLIGSACESGEIF 636

Query: 157  RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--------------HRGYDRYRESQVVQ 202
            RAF    S+   +++  F        ++ +                     R    ++  
Sbjct: 637  RAFLEGKSEEEIEKIAAFYD------FLEIMPVENNSFLIREGYLKDEEDLREINKKIYN 690

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
            L       +VAT+++ +          +        +   +    V  D  L  R+    
Sbjct: 691  LGKKLGKLVVATSDAHYCHPHQRVLRQI--------LKHNQGYNDVENDPQLYFRTTDEM 742

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
            +        +   E+    +  +      +    ++         E E+ N  +      
Sbjct: 743  LKEFEYLGKDACYEVVVENTNKIADMIEDVKPVPDETFPPKIDGAEEEIYNMTMKKAHEI 802

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                        +  + RL+ ELN I +  F+  +LI    +  +  +   VG  RGS  
Sbjct: 803  YGDPL------PEIVKARLEKELNSIIKNGFAVMYLIAQKLVSKSLSDGYLVG-SRGSVG 855

Query: 383  GSVTAYALTITDIDPLR-----------------------------------------FS 401
             S+ A    IT+++PL                                            
Sbjct: 856  SSLVATMCGITEVNPLPPHYVCPNCKYSEFVTDGSVGCGYDLEDKNCPRCGKKLKKDGHD 915

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            + FE FL  D    PD D++F  D +    ++ +  +G   V +  T  ++  K A   V
Sbjct: 916  IPFETFLGFDGDKEPDIDLNFSGDYQPIAHKFTEELFGQGYVFRAGTISTVAEKTAHGFV 975

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
             +                                    E +  +     +L +SQ   G+
Sbjct: 976  TKY----------------------------------AEEKGLNLHPAEILRLSQGCTGV 1001

Query: 522  YRHASTHAAGIVIGDRP--LSQLVPMYRDVRSDL--PVTQFNMKWIEKAGLIKFDFLGLK 577
             R    H  G++I  R   +    P+     S     +T           L+K D LG  
Sbjct: 1002 KRTTGQHPGGLMIVPRDKEIFDFTPIQHPADSGDKSVITTHFDYHAISGRLLKLDILGHD 1061

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQLESSGM 628
              T+++   D        + L         T           +    GT GI +  +  +
Sbjct: 1062 DPTVIRMLQDLTGVDPRSIPLDDKATMSIFTSTEALGISPEDIDCEVGTFGIPEFGTRFV 1121

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            RQ L   +P    +++ +  L   G         +       + +    +  ++     +
Sbjct: 1122 RQMLIETKPKTFAELVRISGLSH-GTNVWTNNAQDL------VRNGIATLKEVISTRDDI 1174

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++Y  Q         G    ++  +   + K    + + ++             +    +
Sbjct: 1175 MLYLIQ--------KGVPPKDSFRIMEDVRKGKGLKPEDEQLLR----------EHNVPD 1216

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK------- 801
             +    K   Y F K+HAAAY +++++ A+ K HY   F A   T+  D+ +        
Sbjct: 1217 WYIESCKKITYMFPKAHAAAYVMMAFRIAYFKVHYKEAFYATYFTVRADDFDYATILKGR 1276

Query: 802  --------------------------IKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNR 834
                                      + +   +     ++  P  +N    + F + D  
Sbjct: 1277 DAIRQKIRDLENRISSLSQKDKNLLTVLEIANEMLARGLKFYPVDLNESDAERFIIKDGG 1336

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            +     A+  VG   A+ I+EA  +  F S++D   R    KLN++V+E L
Sbjct: 1337 LLIPFNALPNVGVAAAKSIVEARKEGKFLSVDDLIRRA---KLNKQVIEIL 1384



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 37/96 (38%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
             S   V L  H+  S ++   S   ++   A+    A+AITD   + +  E  + + + 
Sbjct: 298 TSSSKRVELHAHTKMSAMDAVCSAEELIKLAASMGHRAVAITDHGVVQAFPEAQEASKSC 357

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
            I+ I G +  +       + N  +        +V+
Sbjct: 358 NIKVIYGMECYLIDDGVPVVYNPKEGQGFDSTFVVV 393


>gi|228935132|ref|ZP_04097959.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            andalousiensis BGSC 4AW1]
 gi|228824497|gb|EEM70302.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            andalousiensis BGSC 4AW1]
          Length = 1433

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 155/923 (16%), Positives = 296/923 (32%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGGA-- 754

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                     P  + +   EM+  FS L E  +   EI    +  +      +    +   
Sbjct: 755  -NPLNRHSLPPVHFRTTDEMLECFSFLGE--DVAKEIVVTNTQKIASLIGDVHPVKDDLY 811

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 812  TPKIEGADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEDMKSNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      DF +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGEFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEEHRLLADETYVVF 421


>gi|229092858|ref|ZP_04223992.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42]
 gi|228690480|gb|EEL44263.1| DNA polymerase III polC-type [Bacillus cereus Rock3-42]
          Length = 1433

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 155/923 (16%), Positives = 296/923 (32%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGGA-- 754

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                     P  + +   EM+  FS L E  +   EI    +  +      +    +   
Sbjct: 755  -NPLNRHSLPPVHFRTTDEMLECFSFLGE--DVAKEIVVTNTQKIASLIGDVHPVKDDLY 811

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 812  TPKIEGADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEDMKSNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      DF +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGEFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEEHRLLADETYVVF 421


>gi|229157394|ref|ZP_04285472.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342]
 gi|228626121|gb|EEK82870.1| DNA polymerase III polC-type [Bacillus cereus ATCC 4342]
          Length = 1433

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 155/923 (16%), Positives = 296/923 (32%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGGA-- 754

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                     P  + +   EM+  FS L E  +   EI    +  +      +    +   
Sbjct: 755  -NPLNRHSLPPVHFRTTDEMLECFSFLGE--DVAKEIVVTNTQKIASLIGDVHPVKDDLY 811

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 812  TPKIEGADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPACNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEDMKSNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      DF +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGEFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSRLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 421


>gi|167635812|ref|ZP_02394121.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0442]
 gi|254739618|ref|ZP_05197312.1| DNA polymerase III PolC [Bacillus anthracis str. Kruger B]
 gi|167528769|gb|EDR91527.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0442]
          Length = 1433

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 155/923 (16%), Positives = 296/923 (32%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGGA-- 754

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                     P  + +   EM+  FS L E  +   EI    +  +      +    +   
Sbjct: 755  -NPLNRHSLPPVHFRTTDEMLECFSFLGE--DVAKEIVVTNTQKIASLIGDVHPVKDDLY 811

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 812  TPKIEGADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEDMKSNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      DF +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGEFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEEHRLLADETYVVF 421


>gi|167639871|ref|ZP_02398140.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0193]
 gi|177652036|ref|ZP_02934582.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0174]
 gi|254735856|ref|ZP_05193562.1| DNA polymerase III PolC [Bacillus anthracis str. Western North
            America USA6153]
 gi|167512272|gb|EDR87649.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0193]
 gi|172082405|gb|EDT67470.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0174]
          Length = 1433

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 155/923 (16%), Positives = 296/923 (32%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGGA-- 754

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                     P  + +   EM+  FS L E  +   EI    +  +      +    +   
Sbjct: 755  -NPLNRHSLPPVHFRTTDEMLECFSFLGE--DVAKEIVVTNTQKIASLIGDVHPVKDDLY 811

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 812  TPKIEGADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCLKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEDMKSNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      DF +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGEFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEEHRLLADETYVVF 421


>gi|49478392|ref|YP_037879.1| DNA polymerase III PolC [Bacillus thuringiensis serovar konkukian
            str. 97-27]
 gi|49329948|gb|AAT60594.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis serovar
            konkukian str. 97-27]
          Length = 1433

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 155/923 (16%), Positives = 296/923 (32%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGGA-- 754

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                     P  + +   EM+  FS L E  +   EI    +  +      +    +   
Sbjct: 755  -NPLNRHSLPPVHFRTTDEMLECFSFLGE--DVAKEIVVTNTQKIASLIGDVHPVKDDLY 811

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 812  TPKIEGADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEDMKSNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      DF +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGEFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEEHRLLAEETYVVF 421


>gi|30263821|ref|NP_846198.1| DNA polymerase III PolC [Bacillus anthracis str. Ames]
 gi|47529245|ref|YP_020594.1| DNA polymerase III PolC [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186668|ref|YP_029920.1| DNA polymerase III PolC [Bacillus anthracis str. Sterne]
 gi|52141670|ref|YP_085159.1| DNA polymerase III PolC [Bacillus cereus E33L]
 gi|65321145|ref|ZP_00394104.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
            [Bacillus anthracis str. A2012]
 gi|165872624|ref|ZP_02217255.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0488]
 gi|170687849|ref|ZP_02879063.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0465]
 gi|170706900|ref|ZP_02897358.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0389]
 gi|190568456|ref|ZP_03021363.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis Tsiankovskii-I]
 gi|196042171|ref|ZP_03109454.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus NVH0597-99]
 gi|218904946|ref|YP_002452780.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus AH820]
 gi|227813274|ref|YP_002813283.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. CDC 684]
 gi|228947537|ref|ZP_04109827.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            monterrey BGSC 4AJ1]
 gi|229123331|ref|ZP_04252535.1| DNA polymerase III polC-type [Bacillus cereus 95/8201]
 gi|229601637|ref|YP_002868056.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0248]
 gi|254683475|ref|ZP_05147335.1| DNA polymerase III PolC [Bacillus anthracis str. CNEVA-9066]
 gi|254721996|ref|ZP_05183785.1| DNA polymerase III PolC [Bacillus anthracis str. A1055]
 gi|254756009|ref|ZP_05208040.1| DNA polymerase III PolC [Bacillus anthracis str. Vollum]
 gi|254759330|ref|ZP_05211355.1| DNA polymerase III PolC [Bacillus anthracis str. Australia 94]
 gi|301055308|ref|YP_003793519.1| DNA polymerase III subunit alpha [Bacillus anthracis CI]
 gi|30258465|gb|AAP27684.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. Ames]
 gi|47504393|gb|AAT33069.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. 'Ames Ancestor']
 gi|49180595|gb|AAT55971.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. Sterne]
 gi|51975139|gb|AAU16689.1| DNA polymerase III, alpha subunit [Bacillus cereus E33L]
 gi|164711656|gb|EDR17202.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0488]
 gi|170128318|gb|EDS97187.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0389]
 gi|170668165|gb|EDT18914.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0465]
 gi|190560460|gb|EDV14438.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis Tsiankovskii-I]
 gi|196027023|gb|EDX65647.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus NVH0597-99]
 gi|218536830|gb|ACK89228.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus AH820]
 gi|227006508|gb|ACP16251.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. CDC 684]
 gi|228660107|gb|EEL15743.1| DNA polymerase III polC-type [Bacillus cereus 95/8201]
 gi|228812057|gb|EEM58388.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            monterrey BGSC 4AJ1]
 gi|229266045|gb|ACQ47682.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            anthracis str. A0248]
 gi|300377477|gb|ADK06381.1| DNA polymerase III subunit alpha [Bacillus cereus biovar anthracis
            str. CI]
          Length = 1433

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 155/923 (16%), Positives = 296/923 (32%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGGA-- 754

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                     P  + +   EM+  FS L E  +   EI    +  +      +    +   
Sbjct: 755  -NPLNRHSLPPVHFRTTDEMLECFSFLGE--DVAKEIVVTNTQKIASLIGDVHPVKDDLY 811

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 812  TPKIEGADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEDMKSNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      DF +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGEFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEEHRLLADETYVVF 421


>gi|160934103|ref|ZP_02081490.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753]
 gi|156866776|gb|EDO60148.1| hypothetical protein CLOLEP_02966 [Clostridium leptum DSM 753]
          Length = 1451

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 155/912 (16%), Positives = 290/912 (31%), Gaps = 187/912 (20%)

Query: 87   NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM 146
              G          ++LV  + G + L +L+S  +L D   +  RI  S L +   EGL++
Sbjct: 614  AGGDIKKLRSYHQIILVKNSTGLKNLYKLISYAHL-DYFYKKPRIPKSVLMK-HREGLLI 671

Query: 147  LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY------------DR 194
             +   +G + RA            +  F        Y+ +Q                 ++
Sbjct: 672  GSACEAGELFRAIVSGQPWNELVSIAKFYD------YLEIQPLGNNMFMLRDGTVQTEEQ 725

Query: 195  YR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
             R     V++L      P+VAT +  F+   D +   +LMA             +    +
Sbjct: 726  LREFNRTVIKLGQELNKPVVATCDVHFMDPHDSDYRKILMAGQ----GFTDADQQAPLYY 781

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
                       +    +A E  VE   + + +++  +PI P       D      E +L 
Sbjct: 782  RTTPEMLQEFAYLGKEKAYEVVVENPNKIADMVEEVSPIPPGVFPPFIDG----AEEQLT 837

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
                   +              +    RLD EL+ I +  FS  ++     +  ++ +  
Sbjct: 838  TITWERAKKMYGDPL------PKIVYDRLDRELSSITKHGFSVLYMTAQKLVADSEAHGY 891

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLR--------------------------------- 399
             VG  RGS   S  A    I++++PL                                  
Sbjct: 892  LVG-SRGSVGSSFVATMSGISEVNPLCPHYVCPKCHHSEFITDGSVGSGFDLPDKNCPEC 950

Query: 400  --------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
                      + FE FL  D    PD D++F  + + +  RY +  +G + V +  T  +
Sbjct: 951  GTPYHRDGHDIPFETFLGFDGDKTPDIDLNFSGEYQSDAHRYTETLFGKDNVFKAGTIAT 1010

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            +  K  +  V +  +                     ++   A+++R              
Sbjct: 1011 VAEKTGIGFVKKYAES------------------KGTMMHRAEEARL------------- 1039

Query: 512  LEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKA 566
               +    G+ R    H  G+V+      +    P+         D   T F+   I   
Sbjct: 1040 ---AAGCTGVKRTTGQHPGGMVVVPRGMEVYDFCPVQHPANDQNSDNITTHFDFHSIHDT 1096

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGT 617
             + K D LG    T+ +   D+     + V +S        T           + +  GT
Sbjct: 1097 -ICKLDELGHDVPTIYRYLEDYTGINVMDVSMSDPEVMSLFTSTKALGVEPEDIDSQTGT 1155

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
              + ++ +  +RQ L   QP    D++ +  L          V+                
Sbjct: 1156 FSLPEVGTHFVRQMLIDSQPKTFSDLLQVSGLSH-----GTDVWIGNAQ----------D 1200

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            +      T   +I     +    L  G     A  +     K   ++     E       
Sbjct: 1201 LIANKTCTISEVIGTRDSIMTYLLHKGLEPKMAFKIMEITRKGKAKK--LLTEEHYQAMR 1258

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
             +G+ +    +  ++      Y F K+HAAAY + + +  W K H PVE+ AA  T+  +
Sbjct: 1259 DHGVPEWYIESCLKI-----KYMFPKAHAAAYMISTLRLGWYKVHRPVEYYAAYFTVRGE 1313

Query: 798  NVEK---------------------------------IKKFCQDARQFNIQIMPPSVNTP 824
            + +                                    +   +     I+++P  +   
Sbjct: 1314 DFDAAVVVKGKEAVRAKMLEIQQKGKEASAKDNASYATLQIVNEMLARGIEVLPIDIYKS 1373

Query: 825  CVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVL 882
                + V D +I     ++ GVG   A  +  A  +   F S++DF +R    K+ + V+
Sbjct: 1374 DARKYLVEDGKIRLPFGSLPGVGGAAAASLAAARENGGEFISVDDFQARA---KVGKAVI 1430

Query: 883  ESLVFAGALDCF 894
            E+L   GA    
Sbjct: 1431 ETLKETGAFQGL 1442



 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS---ALEFSQKACAAG-- 66
           V L +H++ S ++G     +++++  A    A+AITD     +   A+         G  
Sbjct: 344 VELHLHTNMSSMDGVTPAADLINRAYAWGHKAVAITDHGVAQAFPDAMNAVNAIRGKGGK 403

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           I+ I G +          +  + + PF    
Sbjct: 404 IKVIYGTEAYFVNDMVPVVKGESEMPFDGDY 434


>gi|220927905|ref|YP_002504814.1| DNA polymerase III PolC [Clostridium cellulolyticum H10]
 gi|219998233|gb|ACL74834.1| DNA polymerase III, alpha subunit [Clostridium cellulolyticum H10]
          Length = 1433

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 154/898 (17%), Positives = 299/898 (33%), Gaps = 197/898 (21%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
            +    ++LV    G + L ++VS+ +L     +  R+    L E   EGLI+ +   +G 
Sbjct: 608  SSYHAIILVKNKVGLKNLYKIVSQSHLK-YLYKKPRVPKKLLMEY-REGLILGSACEAGE 665

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQV 200
            + RA   N S+    +++ F        Y+ +Q                    +    ++
Sbjct: 666  LYRAILNNKSEDEISKIVRFYD------YLEIQPLGNNQFLINNGKVSSQEELKKINKKI 719

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
            ++L   H  P+VAT +  F+   D E    ++        +    P              
Sbjct: 720  IRLGERHRKPVVATCDVHFMDPRD-EVFRRILMSGRGFTDADNQAPLYFRTTEEMLEEFS 778

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
                    +A E  +E     + +++  AP+L      + +  +++ EN   N+A     
Sbjct: 779  YLGEE---KAREVVIENTNLIADMIESIAPVLEGTFPPKIEGAEQDIENMAMNRAKE--- 832

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                   I      +   +RL+ ELN I +  F+  +LI    +  +  +   VG  RGS
Sbjct: 833  -------IYGEELPEVVAKRLEKELNSIIKNGFAVMYLIAQKLVSKSLNDGYLVG-SRGS 884

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S  A    IT+++ L+                                         
Sbjct: 885  VGSSFVANMSGITEVNSLQPHYVCEKCKYSEFILDGSYDCGFDLPEKDCPNCGNKLKKDG 944

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
            + + FE FL  D    PD D++F  D +    +Y +  +G   V +  T  S+  K A  
Sbjct: 945  YDIPFETFLGFDGDKEPDIDLNFSGDYQPVAHKYTEELFGEGYVFRAGTIASVAEKTAYG 1004

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V   L                                    R    +   +  + +   
Sbjct: 1005 YVKNYLD----------------------------------ERSIVVTNAEINRLVKGCT 1030

Query: 520  GLYRHASTHAAGIVIGDRP--LSQLVPMYRDVRS--DLPVTQFNMKWIEKAGLIKFDFLG 575
            G+ R    H  GI+I  +   +    P+ R         +T           ++K D LG
Sbjct: 1031 GIKRTTGQHPGGIMIVPKDKEIFDFSPIQRPADDIKSEIITTHFDYHFLHGSILKLDILG 1090

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIF 621
                T+++     + +    VD   IP  + +T  L ++                T  + 
Sbjct: 1091 HDDPTVIR-----MLEDLTGVDARTIPIGEKKTMSLFSSTEALGVKPEDIGSETGTFAVP 1145

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            +  +  +RQ L   +P    ++I +  L                N +E I      +   
Sbjct: 1146 EFGTKFVRQMLLDTKPQSFSELIRISGLSHG-------TDVWLNNAQELIRDGITTLSQS 1198

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            +     ++IY         + +G     A  +   + K    + + +            +
Sbjct: 1199 ICCRDDIMIYL--------MHAGLPPKTAFKIMEDVRKGKGVKEEYEAI----------M 1240

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
             +    + +    K   Y F K+HAAAY +++++ AW K +YP  F A   T+  D+ + 
Sbjct: 1241 KENNVPDWYIQSCKKIKYMFPKAHAAAYVMMAFRIAWFKVYYPEAFYATYFTVRADDFDA 1300

Query: 802  IKKFC---------------------------------QDARQFNIQIMPPSVN-TPCVD 827
                                                   +     I  +P ++  +    
Sbjct: 1301 EMMTYGQDKVRNKIKEFEMKGNNITTKEKNVLTILEVVNEMYARGINFLPINLYLSEATK 1360

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            F++ D  I   + A++G+G   A++I+EA  +  F S+++  +R    K+++ V+E L
Sbjct: 1361 FRIEDKSIRPPMNALQGLGGAAAQNIIEARKNGEFLSIDELRTRA---KISKSVIEIL 1415



 Score = 89.5 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 32/70 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++G  ++ +++ + A     AIA+TD   + +  +    +    I+ I 
Sbjct: 337 VELHLHTQMSSMDGVTAVKDLVKRAAQWGHKAIAVTDHGIVQAYPDAYAASKKNNIKVIY 396

Query: 72  GCQLDIDMQD 81
           G +  +    
Sbjct: 397 GLECYLLDDS 406


>gi|319892281|ref|YP_004149156.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
            HKU10-03]
 gi|317161977|gb|ADV05520.1| DNA polymerase III alpha subunit [Staphylococcus pseudintermedius
            HKU10-03]
          Length = 1435

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 153/920 (16%), Positives = 298/920 (32%), Gaps = 197/920 (21%)

Query: 80   QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEI 139
              N K++N+          + L+V    G + L ++VS   L+    ++ RI  S L E 
Sbjct: 593  DINKKLSNEDAYKRARPQHVTLIVQNQTGLKNLFKIVSAS-LVQYYYRTPRIPRSLLDE- 650

Query: 140  GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ------------ 187
              EGL++ T    G +  A         E+    +        Y+ +Q            
Sbjct: 651  HREGLLIGTACDEGEVFTAVMQRDQSEVERIAKYYD-------YIEVQPPALYQDLLDRD 703

Query: 188  --RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              R          +++++  T+++P++AT N+ +L E D  A  +L+A      +     
Sbjct: 704  LIRDNETLVEIYERILKVGETNQIPVIATGNAHYLHEHDAIARRILIAAQPGNPL--NRS 761

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                      +       F     A +  VE  R  +  ++   PI  +      +    
Sbjct: 762  TLPEAHFRTTDEMLDAFHFLGEERAHQIVVENTRALAERIEKVVPIKDKLYTPNMEG--- 818

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                E+R  +    +    +         Q    RL+ EL  I    F+  +LI    ++
Sbjct: 819  -ANEEIREMSYRHAKQLYGE------ELPQIVIDRLEKELESIIGNGFAVIYLISQRLVK 871

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------------- 399
             + ++   VG  RGS   S  A    IT+++PL                           
Sbjct: 872  KSLEDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPSCKKSEFFDDGSVGSGFDLP 930

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL      +PD D++F  + + +   Y +  +G E V +
Sbjct: 931  DKTCECGTEMIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPKAHNYTKVLFGEEYVYR 990

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V +          R  +                            
Sbjct: 991  AGTIGTVAEKTAFGFV-KGYLNDQGIHKRGAE---------------------------- 1021

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRSD---LPVTQFNM 560
                 +  + +   G+ R    H  GI+       +    P+             T F+ 
Sbjct: 1022 -----VDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIFDFTPIQYPADDQSSSWMTTHFDF 1076

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY----------- 609
              I    ++K D LG    T+++   D          + +        +           
Sbjct: 1077 HSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDDQQTMRIFSSPEALGVTEE 1133

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             +L   GT G+ +  +  +RQ LE  +P    +++ +  L                N +E
Sbjct: 1134 EILAKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHG-------TDVWLGNAQE 1186

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I S    +   +     +++Y         + +G   S A  +  A+ K      +   
Sbjct: 1187 LIRSGTCTLSSCIGCRDDIMVYL--------MYAGLEPSLAFKIMEAVRKGKGLTEE--- 1235

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              F     +N +      +  ++      Y F K+HAAAY +++ + A+ K H+P+ + A
Sbjct: 1236 --FEQVMKENNVPDWYMDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHHPLYYYA 1288

Query: 790  ASMTLEMDNVEKIKK---------------------------------FCQDARQFNIQI 816
            +  T+   + + I                                      +      ++
Sbjct: 1289 SYFTVRASDFDLITMVKDKDSIRQTVKDMYARYMDLGKKEKDVLTVLEIMNEMAHRGYRM 1348

Query: 817  MPPSVNT-PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
             P ++      +F +  + +     A+ G+G   A+ I+EA  + PF S ED   +    
Sbjct: 1349 QPVNLEKSQAYEFIIEGDTLIPPFVAVPGLGENVAKRIVEAREEGPFLSKEDLNKKA--- 1405

Query: 876  KLNRRVLESLVFAGALDCFG 895
             ++++++E L      D  G
Sbjct: 1406 GVSQKIIEYL------DSLG 1419



 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G   + + + + A     AIA+TD N + +  +    A   GI+ I 
Sbjct: 334 VEFHLHTSMSQMDGVTHIGDYVAQAAQWGHDAIAVTDHNVVQAYPDAHAAAEKHGIKMIY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G +  +                     +V 
Sbjct: 394 GMEGMLVDDGVPIAYKPSNIMLQDATYVVF 423


>gi|303238571|ref|ZP_07325105.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2]
 gi|302593969|gb|EFL63683.1| DNA polymerase III, alpha subunit [Acetivibrio cellulolyticus CD2]
          Length = 1446

 Score =  225 bits (574), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 165/944 (17%), Positives = 308/944 (32%), Gaps = 201/944 (21%)

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            +K    G+Q +   + D+D   + +   + +         ++L     G + L +LVS  
Sbjct: 583  EKLKEKGVQTL---E-DVDTYSSDEEAKKSEYKKLKTYHAIILAKDYVGLKNLYKLVSYS 638

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS-SQVAEKRLLTFKKLF 178
            +L D   +  RI  S  ++  +EGLI+ +  S G + +A          E     +    
Sbjct: 639  HL-DYFYKKPRILKSVYKKY-SEGLILGSACSEGELFQAILHGKSDDEIETIAKDYD--- 693

Query: 179  GDRLYVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNSLFLSEED 224
                Y+ +Q     D              +    ++V L      P+VAT +  FL  ED
Sbjct: 694  ----YLEIQPLGNNDYLVRKEEVPDKEYIKEINRKIVALGEQLNKPVVATGDVHFLDPED 749

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
             E +  ++        + K  P                      +A E  V      + +
Sbjct: 750  -EIYRRILEAGQGYDDADKQAPLYLKTTDEMLEEFSYLGEE---KAYEVVVTNTNLIADM 805

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
             +  +PI P       +  ++  ++    KA            +      +  +QRLD E
Sbjct: 806  CEQISPISPEKCPPHIEGCEQTIKDISFGKAHE----------LYGDPLPEIVQQRLDRE 855

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----- 399
            L+ I +  FS  ++I    +  + ++   VG  RGS   SV AY   IT+++ L      
Sbjct: 856  LDSIIKNGFSVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSVVAYMTGITEVNALPPHYRC 914

Query: 400  -----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQ 424
                                                 + FE FL  D    PD D++F  
Sbjct: 915  PSCKYSDFTDYGFNNGFDLPDKPCPVCGEMLAKDGIDIPFETFLGFDGDKEPDIDLNFSG 974

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + + +  +Y +  +G     +  T G++  K A   V +  +                  
Sbjct: 975  EYQAKAHKYTEVIFGKGTTFKAGTVGTIADKTAFGYVKKYYE------------------ 1016

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQL 542
                             R    +   +  I++   G+ R    H  GI++    R + + 
Sbjct: 1017 ----------------EREIHINKAEIERIAKGCTGIKRTTGQHPGGIIVVPKGREIFEF 1060

Query: 543  VPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
             P+     D  SD+  T F+   I    L+K D LG    T+++     + Q    VD  
Sbjct: 1061 CPVQHPADDPDSDIITTHFDYHSI-DQNLLKLDILGHDDPTMIR-----MLQDITGVDPK 1114

Query: 600  LIPFDDHETYHLLTTKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             IP DD +T  L ++                T G+ +  +  +R  L    P    D+I 
Sbjct: 1115 TIPMDDKDTMSLFSSTEALGVTPQQINSKVGTFGVPEFGTKFVRGMLLDTMPKQFADLIC 1174

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +  L          V+                +      T    +     + +  +  G 
Sbjct: 1175 ISGLSH-----GTDVWLGNA----------KDLIDAGTVTLSEAVCTRDDIMVYLMKKGL 1219

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
              + A  +   + K  K   + +   + +   K+ + +    +  ++      Y F K+H
Sbjct: 1220 PPNAAFKIMETVRKG-KALKEPKWPDYEALMRKHEVPEWYIDSCKKI-----KYMFPKAH 1273

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ------------------ 807
            A AY +++++ AW K H P+ + AA  ++     +                         
Sbjct: 1274 ACAYIMMAFRIAWFKVHIPLAYYAAYFSIRAKAFDAEFMINGKEVVKAKMKEIEMQGNQA 1333

Query: 808  ---------------DARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTAR 851
                           +  +   + +P  +      +F + D  I   L +I G+G   A 
Sbjct: 1334 ANKDKDMYDDLELVLEMYERGFKFLPIDLYKSHATNFLIEDGSIRPPLNSISGMGNVAAE 1393

Query: 852  HIMEA-SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             I  A      F S+++  SR    K+    ++SL   G L   
Sbjct: 1394 GIYTAFKEGGHFGSIDELKSRA---KIGNSTIDSLEKFGCLKGL 1434



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 2/91 (2%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-CAA-GIQP 69
           V L +H+  S ++   S  +++ +  +    +IAITD   + S  E  +        ++ 
Sbjct: 336 VELHMHTQMSQMDAMSSATDLIKRAMSWGMKSIAITDHGVVQSFPEAHKLLGRDNPNMKV 395

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           + G +  +       +TN       TV  ++
Sbjct: 396 VYGVEAYLAPDKKPSVTNLKGQSIDTVYCVL 426


>gi|228922572|ref|ZP_04085872.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            huazhongensis BGSC 4BD1]
 gi|228837001|gb|EEM82342.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            huazhongensis BGSC 4BD1]
          Length = 1433

 Score =  225 bits (574), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 154/923 (16%), Positives = 296/923 (32%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGGA-- 754

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                     P  + +   EM+  FS L E  +   E+    +  +      +    +   
Sbjct: 755  -NPLNRHSLPPVHFRTTDEMLECFSFLGE--DKAKEVVVTNTQKIASLIGDVHPVKDDLY 811

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 812  TPKIEGADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPACNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEDDMKSNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      DF +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 421


>gi|255523926|ref|ZP_05390889.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
 gi|296185167|ref|ZP_06853577.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            carboxidivorans P7]
 gi|255512357|gb|EET88634.1| DNA polymerase III, alpha subunit [Clostridium carboxidivorans P7]
 gi|296050001|gb|EFG89425.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            carboxidivorans P7]
          Length = 1449

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 155/933 (16%), Positives = 297/933 (31%), Gaps = 197/933 (21%)

Query: 72   GCQL--DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            G +   D+D+  + +   + +         ++L     G + L +LVS  +L D   +  
Sbjct: 592  GAETLQDVDVYGSDEAAKKEEYKKLKTYHAIILAKDYVGLKNLYKLVSYSHL-DYFYKKP 650

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLFGDRLYVNLQR 188
            RI  S  ++  +EGLI+ +  S G + +A     S    E     +        Y+ +Q 
Sbjct: 651  RILKSMYKKY-SEGLILGSACSEGELYQAILLGKSDEQIEAIAQDYD-------YLEIQP 702

Query: 189  HRGYD--------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
                D              +    +++ LA     P+VAT +  F+  ED E +  ++  
Sbjct: 703  LGNNDYLVRQEQVPNKEYLKKINKKIIALAEKFNKPVVATGDVHFMDPED-EIYRRILEA 761

Query: 235  AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
                  +    P          +           +A E  V    + + + +  +PI P 
Sbjct: 762  GQGFKDADNQAPLYLRTTEEMLQEFSYLGEE---KAYEVVVTNTNKIADMCEQISPISPE 818

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                  D  ++  ++    KA            +      +  + RLD EL  I +  FS
Sbjct: 819  KCPPHIDGCEQTIKDIAYEKAHE----------LYGDPLPEIVQTRLDKELESIIKNGFS 868

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------- 399
              ++I    +  +  +   VG  RGS   S  A    IT+++ L                
Sbjct: 869  VMYIIAQKLVWKSNDDGYLVG-SRGSVGSSFVANMTGITEVNALPPHYRCPSCKHSDFSD 927

Query: 400  -------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                       + FE FL  +    PD D++F  + + +  +Y 
Sbjct: 928  YGVKNGFDLPDKVCPVCGEKLVKDGIDIPFETFLGFNGDKEPDIDLNFSGEYQAKAHKYT 987

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            +  +G     +  T G++  K A   V +                               
Sbjct: 988  EVIFGKGTTFKAGTIGTIAEKTAFGYVKKYYD---------------------------- 1019

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYR---DV 549
                   +    +   +  I+    G+ R    H  GI++    R + +  P+     D 
Sbjct: 1020 ------EKNVPVNKAEITRIAVGCTGIKRTTGQHPGGIIVVPKGREIFEFCPVQHPADDS 1073

Query: 550  RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
             SD+  T F+   I+       + L L  L     ++  + Q    V+   IP DD ET 
Sbjct: 1074 NSDIITTHFDYHSID------QNLLKLDILGHDDPTVIRMLQDITGVNPHEIPMDDKETM 1127

Query: 610  HLLTTKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
             + ++                T GI +  +  +R  L    P    D+I +  L      
Sbjct: 1128 SIFSSTEALGVTPEQINSKVGTFGIPEFGTKFVRGMLLDTMPKAFSDLICISGLSH---- 1183

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
                V+                +      T    +     + I  +  G   + A  +  
Sbjct: 1184 -GTDVWLGNA----------KDLIDQGVVTLSEAVCTRDDIMIYLIKKGLPNNTAFKIME 1232

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
             + K    +   +   + +   ++ + +    +  ++      Y F K+HAAAY +++++
Sbjct: 1233 LVRKGKALKDPAKWAEYEALMREHDVPEWYIDSCRKI-----KYMFPKAHAAAYVMMAFR 1287

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ---------------------------- 807
             AW K H P  + AA  T+   + +                                   
Sbjct: 1288 IAWFKVHIPKAYYAAYFTIRAKSFDSEFMIFGKEKVREKMKEIEMMGNQATPKDKDMYDD 1347

Query: 808  -----DARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
                 +  +   + +P  +       F V +  +   + +I G+G   A  I  A+ ++ 
Sbjct: 1348 LEIVLEMYERGFKFLPIDLYKSNATKFIVEEEGLRPPINSISGMGNVAAEGIYNAAKEET 1407

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            F S+ED   R    K+    +E L   G L   
Sbjct: 1408 FSSIEDVKKR---SKIGNSAIELLKKFGCLKGL 1437



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-CAA-GIQP 69
           V L +H+  S ++   S  +++ +  +    +IAITD   + +  E  +        ++ 
Sbjct: 339 VELHMHTQMSQMDAMTSATDLIKRAMSWGMKSIAITDHGVVQAFPEAHKLLGRDNPDMKI 398

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           I G +  +       +TN       T   ++
Sbjct: 399 IYGVEAYLAPDKKPSVTNIKGQSIDTTYCVL 429


>gi|228954094|ref|ZP_04116123.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar kurstaki
            str. T03a001]
 gi|228805660|gb|EEM52250.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar kurstaki
            str. T03a001]
          Length = 1433

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 153/923 (16%), Positives = 296/923 (32%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGGA-- 754

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                     P  + +   EM+  FS L E  +   E+    +  +      +    +   
Sbjct: 755  -NPLNRHSLPPVHFRTTDEMLECFSFLGE--DKAKEVVVTNTQKIASLIGDVHPVKDDLY 811

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 812  TPKIEGADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPACNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEDMKNNNVPDWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 421


>gi|222529790|ref|YP_002573672.1| DNA polymerase III subunit alpha [Caldicellulosiruptor bescii DSM
            6725]
 gi|222456637|gb|ACM60899.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor bescii DSM
            6725]
          Length = 1402

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 147/891 (16%), Positives = 285/891 (31%), Gaps = 187/891 (20%)

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
                +LV   +G + L +LVS  +L +   +  RI  S L ++  +GL++ +   SG I 
Sbjct: 579  YHATILVKNQQGLKNLYKLVSYSHL-EYFYKRPRIPKSLLIQL-KDGLLIGSACESGEIF 636

Query: 157  RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--------------HRGYDRYRESQVVQ 202
            RAF    S+   +++  F        ++ +                     R    ++  
Sbjct: 637  RAFLEGKSEEEIEKIAAFYD------FLEIMPVENNSFLIREGYLKDEEDLREINRKIYN 690

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
            L       +VAT+++ +          +        +   +    V  D  L  R+    
Sbjct: 691  LGKKLGKLVVATSDAHYCHPHQRILRQI--------LKHNQGYDDVENDPLLYFRTTDEM 742

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
            +        ++  E+    +  +      +    ++      +  E E+ N  +      
Sbjct: 743  LKEFEYLGSDSCYEVVVENTNKIADMIEDVKPIPDETFPPKIEGAEEEIYNMTMKKAHEI 802

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                        +  R RL+ ELN I +  F+  +LI    +  +  +   VG  RGS  
Sbjct: 803  YGDPL------PEIVRARLEKELNSIIKNGFAVMYLIAQKLVFKSLSDGYLVG-SRGSVG 855

Query: 383  GSVTAYALTITDIDPLR-----------------------------------------FS 401
             S+ A    IT+++PL                                            
Sbjct: 856  SSLVATMCGITEVNPLPPHYICPNCKYSEFITDGSVGCGYDLEDKNCPRCGEKLKKDGHD 915

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            + FE FL  D    PD D++F  D +    ++ +  +G   V +  T  ++  K A   V
Sbjct: 916  IPFETFLGFDGDKEPDIDLNFSGDYQPIAHKFTEELFGQGYVFRAGTISTVAEKTAHGFV 975

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
             +     Y++   L                                   +L +SQ   G+
Sbjct: 976  TK-----YAEEKGLSLHPAE-----------------------------ILRLSQGCTGV 1001

Query: 522  YRHASTHAAGIVIGDRP--LSQLVPMYR--DVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
             R    H  G++I  R   +    P+    D      +T           L+K D LG  
Sbjct: 1002 KRTTGQHPGGLMIVPRDKEIFDFTPIQHPADSTDKSVITTHFDYHAISGRLLKLDILGHD 1061

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQLESSGM 628
              T+++   D        + L         T           +    GT GI +  +  +
Sbjct: 1062 DPTVIRMLQDLTGVDPRSIPLDDKATMSIFTSTEALGISPEDIDCEVGTFGIPEFGTRFV 1121

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            RQ L   +P    +++ +  L   G         +       + +    +  ++     +
Sbjct: 1122 RQMLIETKPKTFAELVRISGLSH-GTNVWTNNAQDL------VRNGIATLKEVISTRDDI 1174

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++Y  Q         G    ++  +   + K    + + ++                  +
Sbjct: 1175 MLYLIQ--------KGVPPKDSFRIMEDVRKGKGLKPEDEQLLRAHN----------VPD 1216

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK------- 801
             +    K   Y F K+HAAAY +++++ A+ K HY   F A   T+  D+ +        
Sbjct: 1217 WYIESCKKITYMFPKAHAAAYVMMAFRIAYFKVHYKEAFYATYFTVRADDFDYATILKGR 1276

Query: 802  --------------------------IKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNR 834
                                      + +   +     ++  P  +N    + F + D  
Sbjct: 1277 DAIRQKIRDLENRISSLSQKDKNLLTVLEIANEMLARGLKFYPVDLNESDAEKFIIKDGG 1336

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            +     A+  VG   A+ I+EA  +  F S++D   R    KLN++V+E L
Sbjct: 1337 LLIPFNALPNVGVAAAKSIVEARKEGRFLSVDDLIRRA---KLNKQVIEIL 1384



 Score = 87.9 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++   S   I+   A+    A+AITD   + +  E  + + +  I+ I 
Sbjct: 304 VELHAHTKMSAMDAVCSAEEIIKLAASMGHRAVAITDHGVVQAFPEAQEASKSCNIKVIY 363

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G +  +       + N  +        +V+
Sbjct: 364 GMECYLIDDGVPVVYNPKEGQGFDSTFVVV 393


>gi|228986961|ref|ZP_04147087.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            tochigiensis BGSC 4Y1]
 gi|228772739|gb|EEM21179.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            tochigiensis BGSC 4Y1]
          Length = 1433

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 155/923 (16%), Positives = 296/923 (32%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGGA-- 754

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                     P  + +   EM+  FS L E  +   EI    +  +      +    +   
Sbjct: 755  -NPLNRHSLPPVHFRTTDEMLECFSFLGE--DVAKEIVVTNTQKIASLIGDVHPVKDDLY 811

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 812  TPKIEGADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEDMKSNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      DF +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSRLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 421


>gi|47569095|ref|ZP_00239784.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus G9241]
 gi|47554257|gb|EAL12619.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus G9241]
          Length = 1433

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 155/923 (16%), Positives = 296/923 (32%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGGA-- 754

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                     P  + +   EM+  FS L E  +   EI    +  +      +    +   
Sbjct: 755  -NPLNRHSLPPVHFRTTDEMLECFSFLGE--DVAKEIVVTNTQKIASLIGDVHPVKDDLY 811

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 812  TPKIEGADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEDMKSNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      DF +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSRLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 421


>gi|222151098|ref|YP_002560252.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402]
 gi|222120221|dbj|BAH17556.1| DNA polymerase III PolC-type [Macrococcus caseolyticus JCSC5402]
          Length = 1434

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 149/927 (16%), Positives = 312/927 (33%), Gaps = 193/927 (20%)

Query: 80   QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEI 139
            + +LK++N+          + L+V   +G + L ++VS   ++    ++ RI  S L E 
Sbjct: 591  EIDLKLSNKDAYKRARPMHVTLIVQNQKGLKNLFKIVSDS-MVKYFYRTPRIPRSLLNEY 649

Query: 140  GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ------------ 187
              EG+++ +   +G +  A      +  EK    +        Y+ +Q            
Sbjct: 650  -REGILVGSACDNGEVFTAVMQKDQEEVEKIARYYD-------YLEVQPKALYQHLLDKD 701

Query: 188  --RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
              R          +++ +    ++P++AT N  +L+E D  A ++L+A      +    +
Sbjct: 702  LIRDNETMEEIYQRILDVGEKLDIPVLATGNVHYLNEHDKIAREILIASNPGNPL--NRQ 759

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                      +       F    +A E  ++     +  ++   PI  +      D    
Sbjct: 760  TLPDAHFRTTDEMLDAFHFLGEEKAYEIVIKNTNELADRIETVIPIQDKLFTPNIDG--- 816

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
                E+R  + A       +         +    RL+ EL+ I    F+  +LI    ++
Sbjct: 817  -ANEEIREMSYARARSIYGE------ELPEIVVARLEKELDSIIGNGFAVIYLISQKLVK 869

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------------- 399
             +  +   VG  RGS   S  A    IT+++PL                           
Sbjct: 870  KSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPKCNSSHFFEDGSVASGFDLP 928

Query: 400  ---------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL      +PD D++F  + +     Y +  +G ++V 
Sbjct: 929  DKSCPSCDVPYIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPIAHNYTKVLFGEDKVF 988

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++  K A   V +          R  +                           
Sbjct: 989  RAGTIGTVAEKTAFGYV-KGYMNDSGTHKRGAE--------------------------- 1020

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRSD---LPVTQFN 559
                  +  + +   G+ R    H  GI  V     +    P+             T F+
Sbjct: 1021 ------IDRLVKSCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPADDQSSAWKTTHFD 1074

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY---------- 609
               I    L+K D LG    T+++   D          + +   +  + +          
Sbjct: 1075 FHSIHD-NLLKLDILGHDDPTMIRMLQDLSG--MDPKTIPVDDKETMKIFSSPESLGVTE 1131

Query: 610  -HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              +L   GTLG+ +  +  +RQ LE  +P    +++ +  L                N +
Sbjct: 1132 EDILCKTGTLGVPEFGTGFVRQMLEDTKPSSFSELVQISGLSHG-------TDVWLGNAQ 1184

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            E I S    +  ++     +++Y         + +G   S A  +  ++ K      +  
Sbjct: 1185 ELIKSGTCDLSSVIGCRDDIMVYL--------MYAGLEPSLAFKIMESVRKGKGLSEE-- 1234

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
               F +   +N + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ + 
Sbjct: 1235 ---FEAAMRENNVPEWYLDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHHPLYYY 1286

Query: 789  AASMTLEMDNVEKIKK---------------------------------FCQDARQFNIQ 815
            A+  T+   + + +                                      +  Q   +
Sbjct: 1287 ASYFTVRASDFDLLTMTKDKHTIKATVKDYYSRFHDLGKKEKDVLTVLEITNEMAQRGFK 1346

Query: 816  IMPPSVNT-PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
            + P S+      +F +  + +     ++ G+G   A+ I+ A  + PF S E+   +   
Sbjct: 1347 VQPISLEKSTAFEFIIEGDTLIPPFISVPGLGENVAKRIVAARDEGPFLSKEELNKKA-- 1404

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQL 901
              +++++++ L   G+L      + QL
Sbjct: 1405 -GVSQKIIDYLDELGSLAGM-PDKAQL 1429



 Score = 73.7 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +HS+ S ++G   +   + + A     AIA+TD N   +  +    A AAGI+ I 
Sbjct: 332 VEFHLHSAMSQMDGITHIGKYVAQAAKWGHKAIAVTDHNGCQAFPDAHAAASAAGIKMIY 391

Query: 72  GCQ-LDIDMQDNLKMTNQGKTPFPTVP 97
           G + + +D   N+    Q ++      
Sbjct: 392 GIEGMLVDDGVNITYKPQDRSLKDATY 418


>gi|312127164|ref|YP_003992038.1| DNA polymerase III subunit alpha [Caldicellulosiruptor hydrothermalis
            108]
 gi|311777183|gb|ADQ06669.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
            hydrothermalis 108]
          Length = 1402

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 147/891 (16%), Positives = 284/891 (31%), Gaps = 187/891 (20%)

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
                +LV   +G + L +LVS  +L +   +  RI  S L ++  +GL++ +   SG I 
Sbjct: 579  YHATILVKNQQGLKNLYKLVSYSHL-EYFYKRPRIPKSLLIQL-KDGLLIGSACESGEIF 636

Query: 157  RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--------------HRGYDRYRESQVVQ 202
            RAF    S+   +++  F        ++ +                     R    ++  
Sbjct: 637  RAFLEGKSEEEIEKIAAFYD------FLEIMPVENNSFLIREGYLKDEEDLREINKKIYN 690

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
            L       +VAT+++ +          +        +   +    V  D  L  R+    
Sbjct: 691  LGKKLGKLVVATSDAHYCHPHQRVLRQI--------LKHNQGYDDVENDPQLYFRTTDEM 742

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
            +        E+  E+    +  +      +    ++      +  E E+ N  +      
Sbjct: 743  LKEFDYLGNESCYEVVVENTNKIADMIEDIKPIPDETFPPKIEGAEEEIYNMTMKKAHEI 802

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                        +  R RL+ ELN I +  F+  +LI    +  +  +   VG  RGS  
Sbjct: 803  YGDPL------PEIVRARLEKELNSIIKNGFAVMYLIAQKLVSKSLSDGYLVG-SRGSVG 855

Query: 383  GSVTAYALTITDIDPLR-----------------------------------------FS 401
             S+ A    IT+++PL                                            
Sbjct: 856  SSLVATMCGITEVNPLPPHYVCPNCKYSEFITDGSVGCGYDLEDKNCPRCGKKLKKDGHD 915

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            + FE FL  D    PD D++F  D +    ++ +  +G   V +  T  ++  K A   V
Sbjct: 916  IPFETFLGFDGDKEPDIDLNFSGDYQPIAHKFTEELFGQGYVFRAGTISTVAEKTAHGFV 975

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
             +                                    E +  +     +L +SQ   G+
Sbjct: 976  TKY----------------------------------AEEKGLNLHPAEILRLSQGCTGV 1001

Query: 522  YRHASTHAAGIVIGDRP--LSQLVPMYRDVRSDL--PVTQFNMKWIEKAGLIKFDFLGLK 577
             R    H  G++I  R   +    P+     S     +T           L+K D LG  
Sbjct: 1002 KRTTGQHPGGLMIVPRDKEIFDFTPIQHPADSGDKSVITTHFDYHAISGRLLKLDILGHD 1061

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQLESSGM 628
              T+++   D        + L         T           +    GT GI +  +  +
Sbjct: 1062 DPTVIRMLQDLTGVDPRSIPLDDKDTMSIFTSTEALGISPEDIDCEVGTFGIPEFGTRFV 1121

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            RQ L   +P    +++ +  L   G         +       + +    +  ++     +
Sbjct: 1122 RQMLIETKPKTFAELVRISGLSH-GTNVWTNNAQDL------VRNGIATLKEVISTRDDI 1174

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++Y  Q         G    ++  +   + K    + + ++                  +
Sbjct: 1175 MLYLIQ--------KGVPPKDSFRIMEDVRKGKGLKPEDEQLLRAHN----------VPD 1216

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK------- 801
             +    K   Y F K+HAAAY +++++ A+ K HY   F A   T+  D+ +        
Sbjct: 1217 WYIESCKKITYMFPKAHAAAYVMMAFRIAYFKVHYKEAFYATYFTVRADDFDYATILKGR 1276

Query: 802  --------------------------IKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNR 834
                                      + +   +     ++  P  +N    + F + D  
Sbjct: 1277 DAIRQKIRDLENRISSLSQKDKNLLTVLEIANEMLARGLKFYPVDLNESDAERFIIKDGG 1336

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            +     A+  VG   A+ I+EA  +  F S++D   R    KLN++V+E L
Sbjct: 1337 LLIPFNALPNVGVAAAKSIVEARKEGRFLSVDDLIRRA---KLNKQVIEIL 1384



 Score = 87.9 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++   S   I+   A+    A+AITD   + +  E  + + +  I+ I 
Sbjct: 304 VELHAHTKMSAMDAVCSAEEIIKLAASMGHRAVAITDHGVVQAFPEAQEASKSCNIKVIY 363

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G +  +       + N  +        +V+
Sbjct: 364 GMECYLIDDGAPVVYNPKEGQGFDSTFVVV 393


>gi|168180697|ref|ZP_02615361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum NCTC 2916]
 gi|182668382|gb|EDT80361.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum NCTC 2916]
          Length = 1432

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 149/905 (16%), Positives = 284/905 (31%), Gaps = 189/905 (20%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  +++L   A G + L +LVS+  L +   +  R+  S + E   EGLI+ +   +
Sbjct: 603  KEPTHHLIILAKNAVGLKNLYKLVSKSNL-EYFFKRPRMAKSLINEY-KEGLIIGSACEA 660

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRES 198
            G I +      ++   K ++ F        Y+ +Q     +                   
Sbjct: 661  GQIYKEILKGKTKEELKNMIDFYD------YLEIQPLGNNEFLVKNGSVKDEKELEEINK 714

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++ +L   +  P+VAT +  FL EE +E    ++        +    P          + 
Sbjct: 715  KICELGEFYNKPVVATCDVHFLDEE-HEVFRRILMSGQGFSDADNQPPLYFRTTEEMLKE 773

Query: 259  EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
                             E+    +  +      +    E+      +  E ++R   +  
Sbjct: 774  FEYLGEE-------KAKEVVIYNTNKIADMIDEIKPIPEETFPPKIEGAEEDIRRMTIEK 826

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
                            +   +RL  ELN I    ++  +LI    +  + ++   VG  R
Sbjct: 827  AHSIYGDPL------PEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SR 879

Query: 379  GSGAGSVTAYALTITDIDPLR--------------------------------------- 399
            GS   S  A    IT+++ L                                        
Sbjct: 880  GSVGSSFAATMSDITEVNGLPPHYVCPKCKYSEFFTDGSVGSGADLEDKDCPNCGTKLIK 939

Query: 400  --FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
                + FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A
Sbjct: 940  DGHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTA 999

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
               V + L                                    +    +   +  +S+ 
Sbjct: 1000 YGFVKKYLD----------------------------------EKNIKANNAEIERLSKG 1025

Query: 518  LEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFD 572
              G+ R +  H  GI  V  D  +    P+         D+  T F+   I    L+K D
Sbjct: 1026 CTGVKRTSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSI-SGRLLKLD 1084

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQL 623
             LG    T+L+   D        V L         T           +    GT G+ + 
Sbjct: 1085 ILGHDDPTVLRMLQDLTQVDPKSVPLGDPKVISLFTSPEALGVTEEDIDCPVGTYGLPEF 1144

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +RQ L   +P    +++ +  L          V+ N      K             
Sbjct: 1145 GTKFVRQMLLDTKPKSFAELVRISGLSH-----GTDVWLNNAQYFIKEGYT--------- 1190

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
              +  I  ++ +M             A  +   + K      +++     +   ++ +  
Sbjct: 1191 TIKDCISTRDDIMVYLLQ-KELPPKSAFTIMEKVRKGKGLTEEQE-----ALMKEHDVPD 1244

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--- 800
                +  ++      Y F K HA AY +++ + A+ K +YP  + A   ++  D+ +   
Sbjct: 1245 WYIESCKKI-----KYMFPKGHAVAYVMMAMRIAYFKVYYPRAYYATYFSVRADDFDADL 1299

Query: 801  ------------------------------KIKKFCQDARQFNIQIMPPSVNTPCV-DFK 829
                                           I + C +  +  I+ +   +       F 
Sbjct: 1300 IVKGEEKIKEKMNELYAMGNNITQKDKGLLTILEICYEMYKRGIKFLKVDLYKSNATKFL 1359

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +  + I   L+A++GVG   A+ I EA  +  F S ED   R    K+ + V+E+L   G
Sbjct: 1360 IEGDSIRPPLSALQGVGKNAAKSIEEARLEGEFISKEDLRLRT---KVTKTVIETLENHG 1416

Query: 890  ALDCF 894
             L   
Sbjct: 1417 CLRGM 1421



 Score = 97.6 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 34/86 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++G   ++ ++ + A     A+AITD   + +  +    A    I+ I 
Sbjct: 333 VELHMHSQMSAMDGMTPVSELVKRAAKWGHKAVAITDHGVVQAYPDAMSAAKKGNIKVIY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       ++  G        
Sbjct: 393 GIEAYLVDDGVPIVSKAGDKTIEDTF 418


>gi|229019012|ref|ZP_04175854.1| DNA polymerase III polC-type [Bacillus cereus AH1273]
 gi|229025258|ref|ZP_04181678.1| DNA polymerase III polC-type [Bacillus cereus AH1272]
 gi|228736011|gb|EEL86586.1| DNA polymerase III polC-type [Bacillus cereus AH1272]
 gi|228742340|gb|EEL92498.1| DNA polymerase III polC-type [Bacillus cereus AH1273]
          Length = 1433

 Score =  225 bits (573), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 152/923 (16%), Positives = 293/923 (31%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+I+ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGIIVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T E P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLEKPVVATGNVHYLDPEDAMYRKILVSSQGGA-N 755

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                           +       F    +A E  V   ++ + ++    P+       + 
Sbjct: 756  PLNRHSLPPVHFRTTDEMLECFSFLGEDKAKEIVVTNTQKVASLIGDVHPVKDDLYTPKI 815

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +      ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 816  EG----ADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKESEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPTCNVSYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKILFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEDMKNNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATEFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSRLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 421


>gi|312621985|ref|YP_004023598.1| DNA polymerase III subunit alpha [Caldicellulosiruptor kronotskyensis
            2002]
 gi|312202452|gb|ADQ45779.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor
            kronotskyensis 2002]
          Length = 1402

 Score =  225 bits (573), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 148/891 (16%), Positives = 284/891 (31%), Gaps = 187/891 (20%)

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
                +LV   +G + L +LVS  +L +   +  RI  S L ++  +GL++ +   SG I 
Sbjct: 579  YHATILVKNQQGLKNLYKLVSYSHL-EYFYKRPRIPKSLLIQL-KDGLLIGSACESGEIF 636

Query: 157  RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--------------HRGYDRYRESQVVQ 202
            RAF    S+   +++  F        ++ +                     R    ++  
Sbjct: 637  RAFLEGKSEEEIEKIAAFYD------FLEIMPVENNSFLIREGYLKDEEDLREINRKIYN 690

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
            L       +VAT+++ +          +        +   +    V  D  L  R+    
Sbjct: 691  LGKKLGKLVVATSDAHYCHPHQRILRQI--------LKHNQGYDDVENDPLLYFRTTDEM 742

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
            +        ++  E+    +  +      +    ++      +  E E+ N  +      
Sbjct: 743  LKEFEYLGSDSCYEVVVENTNKIADMIEDVKPIPDETFPPKIEGAEEEIYNMTMKKAHEI 802

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                        +  R RL+ ELN I +  F+  +LI    +  +  +   VG  RGS  
Sbjct: 803  YGDPL------PEIVRARLEKELNSIIKNGFAVMYLIAQKLVSKSLSDGYLVG-SRGSVG 855

Query: 383  GSVTAYALTITDIDPLR-----------------------------------------FS 401
             S+ A    IT+++PL                                            
Sbjct: 856  SSLVATMCGITEVNPLPPHYICPNCKYSEFITDGSVGCGYDLEDKNCPRCGEKLKKDGHD 915

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            + FE FL  D    PD D++F  D +    ++ +  +G   V +  T  ++  K A   V
Sbjct: 916  IPFETFLGFDGDKEPDIDLNFSGDYQPIAHKFTEELFGQGYVFRAGTISTVAEKTAHGFV 975

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
             +                                +  +   L    V RL   SQ   G+
Sbjct: 976  TKY-------------------------------AEEKGLNLHPAEVLRL---SQGCTGV 1001

Query: 522  YRHASTHAAGIVIGDRP--LSQLVPMYR--DVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
             R    H  G++I  R   +    P+    D      +T           L+K D LG  
Sbjct: 1002 KRTTGQHPGGLMIVPRDKEIFDFTPIQHPADSTDKSVITTHFDYHAISGRLLKLDILGHD 1061

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQLESSGM 628
              T+++   D        + L         T           +    GT GI +  +  +
Sbjct: 1062 DPTVIRMLQDLTGVDPRSIPLDDKATMSIFTSTEALGISPEDIDCEVGTFGIPEFGTRFV 1121

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            RQ L   +P    +++ +  L   G         +       + +    +  ++     +
Sbjct: 1122 RQMLIETKPKTFAELVRISGLSH-GTNVWTNNAQDL------VRNGIATLKEVISTRDDI 1174

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++Y  Q         G    ++  +   + K    + + ++                  +
Sbjct: 1175 MLYLIQ--------KGVPPKDSFRIMEDVRKGKGLKPEDEQLLRAHN----------VPD 1216

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK------- 801
             +    K   Y F K+HAAAY +++++ A+ K HY   F A   T+  D+ +        
Sbjct: 1217 WYIESCKKITYMFPKAHAAAYVMMAFRIAYFKVHYKEAFYATYFTVRADDFDYATILKGR 1276

Query: 802  --------------------------IKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNR 834
                                      + +   +     ++  P  +N    + F + D  
Sbjct: 1277 DAIRQKIRDLENRISSLSQKDKNLLTVLEIANEMLARGLKFYPVDLNESDAEKFIIKDGG 1336

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            +     A+  VG   A+ I+EA  +  F S++D   R    KLN++V+E L
Sbjct: 1337 LLIPFNALPNVGVAAAKSIVEARKEGRFLSVDDLIRRA---KLNKQVIEIL 1384



 Score = 89.5 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++   S   ++   A+    A+AITD   + +  E  + +    I+ I 
Sbjct: 304 VELHAHTKMSAMDAVCSAEELIKLAASMGHRAVAITDHGVVQAFPEAQEASKNCNIKVIY 363

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G +  +       + N  +        +V+
Sbjct: 364 GMECYLIDDGAPVVYNPKEGQGFDSTFVVV 393


>gi|206972660|ref|ZP_03233601.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus AH1134]
 gi|218234060|ref|YP_002368619.1| DNA polymerase III PolC [Bacillus cereus B4264]
 gi|228960034|ref|ZP_04121698.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            pakistani str. T13001]
 gi|229047504|ref|ZP_04193094.1| DNA polymerase III polC-type [Bacillus cereus AH676]
 gi|229071316|ref|ZP_04204539.1| DNA polymerase III polC-type [Bacillus cereus F65185]
 gi|229081073|ref|ZP_04213583.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2]
 gi|229111289|ref|ZP_04240842.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15]
 gi|229129094|ref|ZP_04258067.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4]
 gi|229152017|ref|ZP_04280212.1| DNA polymerase III polC-type [Bacillus cereus m1550]
 gi|229180094|ref|ZP_04307438.1| DNA polymerase III polC-type [Bacillus cereus 172560W]
 gi|229191987|ref|ZP_04318957.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876]
 gi|296504313|ref|YP_003666013.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171]
 gi|206732417|gb|EDZ49598.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus AH1134]
 gi|218162017|gb|ACK62009.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus B4264]
 gi|228591538|gb|EEK49387.1| DNA polymerase III polC-type [Bacillus cereus ATCC 10876]
 gi|228603303|gb|EEK60780.1| DNA polymerase III polC-type [Bacillus cereus 172560W]
 gi|228631366|gb|EEK88000.1| DNA polymerase III polC-type [Bacillus cereus m1550]
 gi|228654331|gb|EEL10196.1| DNA polymerase III polC-type [Bacillus cereus BDRD-Cer4]
 gi|228672065|gb|EEL27356.1| DNA polymerase III polC-type [Bacillus cereus Rock1-15]
 gi|228702117|gb|EEL54593.1| DNA polymerase III polC-type [Bacillus cereus Rock4-2]
 gi|228711770|gb|EEL63722.1| DNA polymerase III polC-type [Bacillus cereus F65185]
 gi|228723751|gb|EEL75106.1| DNA polymerase III polC-type [Bacillus cereus AH676]
 gi|228799550|gb|EEM46503.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            pakistani str. T13001]
 gi|296325365|gb|ADH08293.1| DNA polymerase III PolC [Bacillus thuringiensis BMB171]
          Length = 1433

 Score =  225 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 153/923 (16%), Positives = 296/923 (32%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGGA-- 754

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                     P  + +   EM+  FS L E  +   E+    +  +      +    +   
Sbjct: 755  -NPLNRHSLPPVHFRTTDEMLECFSFLGE--DKAKEVVVTNTQKIASLIGDVHPVKDDLY 811

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 812  TPKIEGADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPACNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEDMKNNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 421


>gi|30021907|ref|NP_833538.1| DNA polymerase III PolC [Bacillus cereus ATCC 14579]
 gi|229146389|ref|ZP_04274760.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24]
 gi|81433857|sp|Q819Y5|DPO3_BACCR RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|29897463|gb|AAP10739.1| DNA polymerase III alpha subunit [Bacillus cereus ATCC 14579]
 gi|228637022|gb|EEK93481.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24]
          Length = 1435

 Score =  225 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 153/923 (16%), Positives = 296/923 (32%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 588  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 646

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 647  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 698

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 699  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGGA-- 756

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                     P  + +   EM+  FS L E  +   E+    +  +      +    +   
Sbjct: 757  -NPLNRHSLPPVHFRTTDEMLECFSFLGE--DKAKEVVVTNTQKIASLIGDVHPVKDDLY 813

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 814  TPKIEGADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 867

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 868  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 926

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 927  GFDLPDKECPACNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 986

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 987  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1023

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1024 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGAEWR 1072

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1073 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1131

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1132 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1184

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1185 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1236

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1237 E-----WEEDMKNNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1286

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1287 LFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1346

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1347 GYSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR 1406

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1407 ---SKVSKTIIEYLDSQGCLGDL 1426



 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 334 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 394 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 423


>gi|323489585|ref|ZP_08094812.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2]
 gi|323396716|gb|EGA89535.1| DNA polymerase III polC-type [Planococcus donghaensis MPA1U2]
          Length = 1435

 Score =  225 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 160/931 (17%), Positives = 305/931 (32%), Gaps = 181/931 (19%)

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            ++A   GI       L    Q N  + +             LL    EG + L +LVS  
Sbjct: 581  KEADQKGI-------LY-HDQLNDYVGSGDAYKRSRPTHCTLLAQNDEGLKNLFKLVSAS 632

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KL 177
            ++ +   +  RI  S LQ+   +GL++ +G   G +  A    S +  EK    +   ++
Sbjct: 633  HI-NYFYRVPRIPRSLLQK-HRKGLLVGSGCDKGEVFEAVMQKSMEEVEKTAQFYDYLEV 690

Query: 178  FGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
                +Y       + R          ++V+++   E+PLVAT N  +L E D     VL+
Sbjct: 691  HPKEVYSHLIEREMIRDEWNLEDIIRKLVKISRKLEIPLVATGNVHYLDETDAIFRQVLI 750

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
                       +    T    +  R+    + +      E   E+    S  +     ++
Sbjct: 751  GSQGG-----ANPLNRTKLPKVHFRTTNEMLDAFDFLGSETAHELVVTNSLKISDMIDVV 805

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
                ++      +  + E+R  +    +              +    R++ EL  I    
Sbjct: 806  KPIKDELYTPKIEGADEEVRELSYNMAQQIYG------SPLPEIVEARIEKELKSIIGHG 859

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------- 399
            F+  +LI    ++ +  +   VG  RGS   S+ A    IT+++PL              
Sbjct: 860  FAVIYLISHKLVKKSLDDGYLVG-SRGSVGSSLVATLTEITEVNPLPPHYICRKCKKSEF 918

Query: 400  ----------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
                                          + FE FL      +PD D++F  + + +  
Sbjct: 919  FDDGSVGSGFDLKDKNCPDCDIPYQKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQSKAH 978

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             Y +  +G + V +  T G++  K A   V R          R  +              
Sbjct: 979  NYTKELFGEDNVFRAGTIGTVAEKTAYGYV-RGYANDRDMTIRGAE-------------- 1023

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDV 549
                               +  + Q   G+ R    H  GI+       +    P+    
Sbjct: 1024 -------------------IDRLVQGCSGVKRSTGQHPGGIIVVPDYMDIYDFSPIQFPA 1064

Query: 550  R---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDL 598
                S+   T F+   I    L+K D LG    T+++   D                + +
Sbjct: 1065 DAQDSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKI 1123

Query: 599  SLIPFDDHETYHLL-TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               P     T   +    GTLGI +  +  +RQ LE  +P+   +++ +  L        
Sbjct: 1124 FAGPETLGVTKEQIGCKTGTLGIPEFGTRFVRQMLEETKPNTFSELVQISGLSHG----- 1178

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
                    N +E I +    +  ++     +++Y         +  G   S A  +  ++
Sbjct: 1179 --TDVWLSNAQELIQNGTCQLSDVIGCRDDIMVYL--------IYQGLESSLAFKIMESV 1228

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K      +     F     K G+      +  ++      Y F K+HAAAY +++ + A
Sbjct: 1229 RKGKGLTPE-----FEEAMKKEGVPNWYIESCKKI-----KYMFPKAHAAAYVLMAVRIA 1278

Query: 778  WMKTHYPVEFLAASMTLEMDNVE---------------------------------KIKK 804
            + K H+P+ + AA  T+  ++ +                                  + +
Sbjct: 1279 YFKVHFPILYYAAYFTVRAEDFDVNAMSKGSQSIRSVIDEINSKGLEASTKEKNLLTVME 1338

Query: 805  FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
               +  +         +     D F +    +     AI G+GT  A+ I+ A     F 
Sbjct: 1339 LTLEMVERGYTFQKVDLYKSSADQFIIEGKSLIPPFNAIPGLGTNAAKSIVAAREHGEFL 1398

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            S ED   R    ++++ ++E +   G L+  
Sbjct: 1399 SKEDLQQR---GRVSKTIIEYMDDHGCLEGM 1426



 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 54/389 (13%), Positives = 111/389 (28%), Gaps = 65/389 (16%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S+++++ + A    PAIAITD   + S  +    +   GI+ I 
Sbjct: 335 VELHLHTPMSQMDAVSSVDSLVSQAAKWGHPAIAITDHAGVQSFPDAYAASKKHGIKAIF 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST--AEG----YQRLIELVSRMYLLDQG 125
           G + ++          +          +V         G    Y  +IEL        + 
Sbjct: 395 GLEANLVDDGVPIAYEERHALLEEETFVVF---DLETTGLSAVYDTIIEL-----AAVKI 446

Query: 126 KQSVRICL-SWLQEIGTEG---LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
           K    I           E     I LTG +   +       ++   E+ +  + +  GD 
Sbjct: 447 KGGQIIDKFESFANPHHELSSTTIDLTGITDDMV------KNAPEVEEVIRKYHEWAGDH 500

Query: 182 -------------LY-----------------VNLQRHRGYDRYRESQVVQLAYTHELPL 211
                        LY                 + L R    +  +  ++  LA    + L
Sbjct: 501 IMVAHNASFDMGFLYVCYKKYGIDTVHATIDTLELARMLHPE-LKNHRLNTLAKKFGIEL 559

Query: 212 VATNNSLFLSEEDYEA--HDVLMAVAHSTVVSQ--------KDRPRVTPDHYLKNRSEMV 261
              + +++ +E       H +  A     +            D  + +   +    ++  
Sbjct: 560 TQHHRAIYDTEATSYLLTHLLKEADQKGILYHDQLNDYVGSGDAYKRSRPTHCTLLAQND 619

Query: 262 SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
               +L + +  +          +        R          K E  E   +       
Sbjct: 620 EGLKNLFKLVSASHINYFYRVPRIPRSLLQKHRKGLLVGSGCDKGEVFEAVMQKSMEEVE 679

Query: 322 RLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
           + AQ       H ++    L     +   
Sbjct: 680 KTAQFYDYLEVHPKEVYSHLIEREMIRDE 708


>gi|307690728|ref|ZP_07633174.1| DNA polymerase III PolC [Clostridium cellulovorans 743B]
          Length = 1439

 Score =  225 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 155/894 (17%), Positives = 291/894 (32%), Gaps = 178/894 (19%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             I+LL     G + L +LVS   L D   +  R+  S ++E   EG+I+ +   +G + +
Sbjct: 616  HIILLSKNQVGIKNLYKLVSFSSL-DNFHRKPRLPRSLIEEY-REGIIIGSACEAGELYK 673

Query: 158  AFFFNSSQVAEKRLLTFKKLFG-----DRLYVNLQRHRGYDR----YRESQVVQLAYTHE 208
                  S    + ++ F          +  ++ +++    D         ++  L   + 
Sbjct: 674  NILQGQSDDELEPIINFYDYLEIQPICNNFFL-IEKGNVKDENELREINRRIYNLGQKYN 732

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT +  FL E D     +L+A       ++   P          R           
Sbjct: 733  KPVVATGDIHFLDERDGVFRKILLA-GQGFSDAENQPPLYFKTTEEMLREFSYLGEK--- 788

Query: 269  EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
                   E+  +    +      +    ++      +  E+E+R   +  +         
Sbjct: 789  ----ACYEVVIKNPNDIAESVETVKPIPDETYPPKIEGAEDEIREMTMKKVHSIYGDPL- 843

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
                  +  ++RLD ELN I    ++  +LI    +  +  +   VG  RGS   S  A 
Sbjct: 844  -----PEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSYSDGYLVG-SRGSVGSSFVAT 897

Query: 389  ALTITDID----------------------------PLRFSLLF-------------ERF 407
               IT+++                            P +                  E F
Sbjct: 898  MSGITEVNGLPPHYVCPNCKNSEFIMDGSVNCGADLPEKNCPKCGSEYIREGHDIPFETF 957

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            L  D    PD D++F  D + ++ +Y +  +G     +  T G++  K A   V +    
Sbjct: 958  LGFDGDKEPDIDLNFSGDNQGDIHKYTEELFGKGHTFKAGTIGTIAEKTAYGFVKK---- 1013

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
                                      D+   R +      +      +Q   G+ R +  
Sbjct: 1014 ------------------------YLDEKEMRVSVAEVERL------TQGCTGVKRTSGQ 1043

Query: 528  HAAGI--VIGDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            H  GI  V  D  +    P+     D  SD+  T F+   I    L+K D LG    T+L
Sbjct: 1044 HPGGIMVVPSDNEIYNFTPVQHPADDPNSDIITTHFDYHSI-SGRLLKLDILGHDDPTIL 1102

Query: 583  QKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQLESSGMRQALE 633
            +   D        + L+        T           L    G+ G+ +  +  +RQ L 
Sbjct: 1103 RMLQDLTGIDPKTLPLNDAAVLSLFTSPDALGVNREELECEVGSYGLPEFGTKFVRQMLV 1162

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              QP    D++ +  L          V+ N      K       +   +     +++Y  
Sbjct: 1163 DTQPKTFSDLVRISGLSH-----GTDVWLNNAQYFIKEGYT--TLRDCISTRDDIMVYL- 1214

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
                   +  G    +A V+   + K      + +         ++ + +    +  ++ 
Sbjct: 1215 -------IYQGLPEKDAFVIMEKVRKGKGLSPENE-----EQMREHKVPEWYIESCKKI- 1261

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------- 800
                 Y F K HA AY +++ + A+ K H+P  + A  +T+   + +             
Sbjct: 1262 ----KYMFPKGHAVAYCMMAVRIAYFKVHHPKAYYATYLTVRGTDFDGNLIIKGEGVIRQ 1317

Query: 801  -------------------KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLA 840
                                I + C +  +  IQ +   +     V F +  + +   + 
Sbjct: 1318 KIHELNSSNDISVKDKGLLTILEICYEMNKRGIQFLKIDLYKSDPVKFTIEGDNLRMPIN 1377

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            A+ GVG   A+ I EA     F S ED   R    K+++ V+E L   G L+  
Sbjct: 1378 ALAGVGENAAKSIAEARKGGEFLSKEDLRIRA---KVSKSVIEVLNEHGCLEGL 1428



 Score = 97.6 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 36/86 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++  ++ + ++++ A     AIAITD   +    E        GI+ I 
Sbjct: 341 VELHAHTTMSAMDAVVAPSKLIERAAKWGHKAIAITDHGVVQGFPEAMDAGKKHGIKIIY 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       + N+G      + 
Sbjct: 401 GVEGYLVDDGGSVVLNEGDRDIDDIF 426


>gi|302874658|ref|YP_003843291.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B]
 gi|302577515|gb|ADL51527.1| DNA polymerase III, alpha subunit [Clostridium cellulovorans 743B]
          Length = 1443

 Score =  225 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 155/894 (17%), Positives = 291/894 (32%), Gaps = 178/894 (19%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             I+LL     G + L +LVS   L D   +  R+  S ++E   EG+I+ +   +G + +
Sbjct: 620  HIILLSKNQVGIKNLYKLVSFSSL-DNFHRKPRLPRSLIEEY-REGIIIGSACEAGELYK 677

Query: 158  AFFFNSSQVAEKRLLTFKKLFG-----DRLYVNLQRHRGYDR----YRESQVVQLAYTHE 208
                  S    + ++ F          +  ++ +++    D         ++  L   + 
Sbjct: 678  NILQGQSDDELEPIINFYDYLEIQPICNNFFL-IEKGNVKDENELREINRRIYNLGQKYN 736

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
             P+VAT +  FL E D     +L+A       ++   P          R           
Sbjct: 737  KPVVATGDIHFLDERDGVFRKILLA-GQGFSDAENQPPLYFKTTEEMLREFSYLGEK--- 792

Query: 269  EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
                   E+  +    +      +    ++      +  E+E+R   +  +         
Sbjct: 793  ----ACYEVVIKNPNDIAESVETVKPIPDETYPPKIEGAEDEIREMTMKKVHSIYGDPL- 847

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
                  +  ++RLD ELN I    ++  +LI    +  +  +   VG  RGS   S  A 
Sbjct: 848  -----PEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSYSDGYLVG-SRGSVGSSFVAT 901

Query: 389  ALTITDID----------------------------PLRFSLLF-------------ERF 407
               IT+++                            P +                  E F
Sbjct: 902  MSGITEVNGLPPHYVCPNCKNSEFIMDGSVNCGADLPEKNCPKCGSEYIREGHDIPFETF 961

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            L  D    PD D++F  D + ++ +Y +  +G     +  T G++  K A   V +    
Sbjct: 962  LGFDGDKEPDIDLNFSGDNQGDIHKYTEELFGKGHTFKAGTIGTIAEKTAYGFVKK---- 1017

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
                                      D+   R +      +      +Q   G+ R +  
Sbjct: 1018 ------------------------YLDEKEMRVSVAEVERL------TQGCTGVKRTSGQ 1047

Query: 528  HAAGI--VIGDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            H  GI  V  D  +    P+     D  SD+  T F+   I    L+K D LG    T+L
Sbjct: 1048 HPGGIMVVPSDNEIYNFTPVQHPADDPNSDIITTHFDYHSI-SGRLLKLDILGHDDPTIL 1106

Query: 583  QKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQLESSGMRQALE 633
            +   D        + L+        T           L    G+ G+ +  +  +RQ L 
Sbjct: 1107 RMLQDLTGIDPKTLPLNDAAVLSLFTSPDALGVNREELECEVGSYGLPEFGTKFVRQMLV 1166

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              QP    D++ +  L          V+ N      K       +   +     +++Y  
Sbjct: 1167 DTQPKTFSDLVRISGLSH-----GTDVWLNNAQYFIKEGYT--TLRDCISTRDDIMVYL- 1218

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
                   +  G    +A V+   + K      + +         ++ + +    +  ++ 
Sbjct: 1219 -------IYQGLPEKDAFVIMEKVRKGKGLSPENE-----EQMREHKVPEWYIESCKKI- 1265

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------- 800
                 Y F K HA AY +++ + A+ K H+P  + A  +T+   + +             
Sbjct: 1266 ----KYMFPKGHAVAYCMMAVRIAYFKVHHPKAYYATYLTVRGTDFDGNLIIKGEGVIRQ 1321

Query: 801  -------------------KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLA 840
                                I + C +  +  IQ +   +     V F +  + +   + 
Sbjct: 1322 KIHELNSSNDISVKDKGLLTILEICYEMNKRGIQFLKIDLYKSDPVKFTIEGDNLRMPIN 1381

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            A+ GVG   A+ I EA     F S ED   R    K+++ V+E L   G L+  
Sbjct: 1382 ALAGVGENAAKSIAEARKGGEFLSKEDLRIRA---KVSKSVIEVLNEHGCLEGL 1432



 Score = 97.6 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 36/86 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++  ++ + ++++ A     AIAITD   +    E        GI+ I 
Sbjct: 345 VELHAHTTMSAMDAVVAPSKLIERAAKWGHKAIAITDHGVVQGFPEAMDAGKKHGIKIIY 404

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       + N+G      + 
Sbjct: 405 GVEGYLVDDGGSVVLNEGDRDIDDIF 430


>gi|302872252|ref|YP_003840888.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
            OB47]
 gi|302575111|gb|ADL42902.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor obsidiansis
            OB47]
          Length = 1402

 Score =  225 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 148/891 (16%), Positives = 285/891 (31%), Gaps = 187/891 (20%)

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
                +LV   +G + L +LVS  +L +   +  RI  S L ++  +GL++ +   SG I 
Sbjct: 579  YHATILVKNQQGLKNLYKLVSYSHL-EYFYKRPRIPKSLLIQL-RDGLLIGSACESGEIF 636

Query: 157  RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVVQ 202
            RAF    S+   +++  F        ++ +                     R    ++ Q
Sbjct: 637  RAFLEGKSEEEIEKIAAFYD------FLEIMPVENNSFLIREGYLKDEESLREINKKIYQ 690

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
            L       +VAT+++ +          +        +   +    V  D  L  R+    
Sbjct: 691  LGKKLGKLVVATSDAHYCHPHQRVLRQI--------LKHNQGYDDVENDPQLYFRTTDEM 742

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
            +        +   E+    +  +      +    ++      +  E E+ N  +      
Sbjct: 743  LKEFEYLGRDACYEVVVENTNKIADMIEDVKPIPDETFPPKIEGAEEEIYNMTMKKAHEI 802

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                        +  R RL+ ELN I +  F+  +LI    +  +  +   VG  RGS  
Sbjct: 803  YGDPL------PEIVRARLEKELNSIIKNGFAVMYLIAQKLVSKSLSDGYLVG-SRGSVG 855

Query: 383  GSVTAYALTITDIDPLR-----------------------------------------FS 401
             S+ A    IT+++PL                                            
Sbjct: 856  SSLVATMCGITEVNPLPPHYVCPNCKYSEFITDGSVGCGYDLEDKNCPRCGEKLRKDGHD 915

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            + FE FL  D    PD D++F  D +    ++ +  +G   V +  T  ++  K A   V
Sbjct: 916  IPFETFLGFDGDKEPDIDLNFSGDYQPIAHKFTEELFGQGYVFRAGTISTVAEKTAHGFV 975

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
             +     Y++   L                                   +L +SQ   G+
Sbjct: 976  TK-----YAEEKGLSLHPAE-----------------------------ILRLSQGCTGV 1001

Query: 522  YRHASTHAAGIVIGDRP--LSQLVPMYR--DVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
             R    H  G++I  R   +    P+    D      +T           L+K D LG  
Sbjct: 1002 KRTTGQHPGGLMIVPRDREIFDFTPIQHPADSEDKSVITTHFDYHAISGRLLKLDILGHD 1061

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQLESSGM 628
              T+++   D        + L         T           +    GT GI +  +  +
Sbjct: 1062 DPTVIRMLQDLTGVDPRSIPLDDKDTMSIFTSTEALGISPEDIDCEVGTFGIPEFGTRFV 1121

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            RQ L   +P    +++ +  L   G         +       + +    +  ++     +
Sbjct: 1122 RQMLIETKPKTFAELVRISGLSH-GTNVWTNNAQDL------VRNGIATLKEVISTRDDI 1174

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++Y  Q         G    ++  +   + K    + + ++                  +
Sbjct: 1175 MLYLIQ--------KGVPPKDSFRIMEDVRKGKGLKPEDEQLLRAHN----------VPD 1216

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK------- 801
             +    K   Y F K+HAAAY +++++ A+ K HY   F A   T+  D+ +        
Sbjct: 1217 WYIESCKKITYMFPKAHAAAYVMMAFRIAYFKVHYKEAFYATYFTVRADDFDYATILKGR 1276

Query: 802  --------------------------IKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNR 834
                                      + +   +     ++  P  +N    + F + D  
Sbjct: 1277 DAIRQKIRDLENRISSLSQKDKNLLTVLEIANEMLARGLKFYPVDLNESDAERFIIKDGG 1336

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            +     A+  VG   A+ I+EA  +  F S++D   R    KLN++V+E L
Sbjct: 1337 LLIPFNALPNVGVAAAKSIVEARKEGRFLSVDDLQRRA---KLNKQVIEIL 1384



 Score = 89.5 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++   S   I+   A+    A+AITD   + +  E  + + +  I+ I 
Sbjct: 304 VELHAHTKMSAMDAVCSAEEIIKLAASMGHKAVAITDHGVVQAFPEAQEASKSYNIKVIY 363

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G +  +       + N  +        +V+
Sbjct: 364 GMECYLIDDGAPVVYNPKEGQGFDSTFVVV 393


>gi|170761721|ref|YP_001787734.1| DNA polymerase III PolC [Clostridium botulinum A3 str. Loch Maree]
 gi|169408710|gb|ACA57121.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum A3 str. Loch Maree]
          Length = 1432

 Score =  225 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 151/905 (16%), Positives = 286/905 (31%), Gaps = 189/905 (20%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  +++L   A G + L +LVS+  L +   +  R+  S + E   EGLI+ +   +
Sbjct: 603  KEPTYHLIILAKNAVGLKNLYKLVSKSNL-EYFFKRPRMAKSLINEY-KEGLIIGSACEA 660

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRES 198
            G I +      ++   K ++ F        Y+ +Q     +                   
Sbjct: 661  GQIYKEILKGKTKEELKNMIDFYD------YLEIQPLGNNEFLVRNGSVKDEKELEEINK 714

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++ +L   +  P+VAT +  FL EE +E    ++        +    P          + 
Sbjct: 715  KICELGEFYNKPVVATCDVHFLDEE-HEVFRRILMSGQGFSDADNQPPLYFRTTEEMLKE 773

Query: 259  EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
                      +A E  +    + + ++    PI       + +      E ++R      
Sbjct: 774  FEYLGEE---KAKEVVIYNTNKIADMIDEIKPIPDETFPPKIEG----AEEDIRRMTTEK 826

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
                            +   +RL  ELN I    ++  +LI    +  + ++   VG  R
Sbjct: 827  AHAIYGDPL------PEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SR 879

Query: 379  GSGAGSVTAYALTITDIDPLR--------------------------------------- 399
            GS   S  A    IT+++ L                                        
Sbjct: 880  GSVGSSFAATMSDITEVNGLPPHYVCPKCKYSEFFTDGSVGSGADLKDKDCPKCGTKLIK 939

Query: 400  --FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
                + FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A
Sbjct: 940  DGHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTA 999

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
               V + L                                    +    +   +  +S+ 
Sbjct: 1000 YGFVKKYLD----------------------------------EKNIKANNAEIERLSKG 1025

Query: 518  LEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFD 572
              G+ R +  H  GI  V  D  +    P+         D+  T F+   I    L+K D
Sbjct: 1026 CTGVKRTSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSI-SGRLLKLD 1084

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQL 623
             LG    T+L+   D        V L         T           +    GT G+ + 
Sbjct: 1085 ILGHDDPTILRMLQDLTQVDPKSVPLGDPKVISLFTSPKALGVTEEDIDCPVGTYGLPEF 1144

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +RQ L   +P    ++  +  L          V+ N      K             
Sbjct: 1145 GTKFVRQMLLDTKPKSFAELARISGLSH-----GTDVWLNNAQYFIKEGYT--------- 1190

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
              +  I  ++ +M       G     A  +   + K      +++     +   ++ +  
Sbjct: 1191 TIKDCISTRDDIMVYLLQ-KGLPPKSAFTIMEKVRKGKGLTEEQE-----ALMKEHDVPD 1244

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--- 800
                +  ++      Y F K HA AY +++ + A+ K +YP  + A   ++  D+ +   
Sbjct: 1245 WYIESCKKI-----KYMFPKGHAVAYVMMAMRIAYFKVYYPRAYYATYFSVRADDFDADL 1299

Query: 801  ------------------------------KIKKFCQDARQFNIQIMPPSVNTPCV-DFK 829
                                           I +   +  +  I+ +   +       F 
Sbjct: 1300 IVKGEEKIKEKMNELYAMGNNITQKDKGLLTILEISYEMYKRGIKFLKVDLYKSNATKFL 1359

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +  + I   L+A++GVG   A+ I EA  +  F S ED   R    K+ + V+E+L   G
Sbjct: 1360 IEGDSIRPPLSALQGVGKNAAKSIEEARLEGEFISKEDLRLRT---KVTKTVIETLENHG 1416

Query: 890  ALDCF 894
             L   
Sbjct: 1417 CLRGM 1421



 Score = 97.6 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 34/86 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++G   ++ ++ + A     A+AITD   + +  +    A    I+ I 
Sbjct: 333 VELHMHSQMSAMDGMTPVSELVKRAAKWGHKAVAITDHGVVQAYPDAMSAAKKGNIKVIY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       ++  G        
Sbjct: 393 GIEAYLVDDGVPIVSKAGDKTIEDTF 418


>gi|56963998|ref|YP_175729.1| DNA polymerase III PolC [Bacillus clausii KSM-K16]
 gi|56910241|dbj|BAD64768.1| DNA polymerase III alpha subunit PolC [Bacillus clausii KSM-K16]
          Length = 1430

 Score =  225 bits (572), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 159/923 (17%), Positives = 299/923 (32%), Gaps = 191/923 (20%)

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            +   +      QG           LLV++  G + L +LVS  + +D   ++ RI  S L
Sbjct: 585  VYHDELNNHMGQGNFHRQRPFHCTLLVTSQTGLKNLYQLVSMSH-VDYYFRTPRIPRSQL 643

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR 196
             +   EGL++ +    G +       S+   EK    +        ++ +Q    Y    
Sbjct: 644  NK-HREGLLIGSACDKGEVFEGMMQKSADEVEKIAGFYD-------FLEIQPLGNYGHLI 695

Query: 197  ESQVVQ--------------LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
            E ++V+              L     LP+VAT N  +L+EED     +L+A         
Sbjct: 696  ERELVKDKTALQEIVGNIVALGERLGLPVVATGNVHYLNEEDAIYRKILIASQGGANPLN 755

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            K          +  R+    +        E   ++    S  +      +    +     
Sbjct: 756  KQ-----KLPDVHFRTTTEMLEEFSFLGAEQAEKVVVTASNDIAAQVGDVHPIPDDLYAP 810

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +  ++E+RN +    ++             +    RL  EL  I    F+  +LI   
Sbjct: 811  KIEGADDEIRNMSYERAKMIYGDPL------PEIVEARLQKELKSIIGHGFAVIYLISHK 864

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------- 399
             ++ +  +   VG  RGS   S  A    IT+++PL                        
Sbjct: 865  LVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPSCKHSHFFDDGSVASGY 923

Query: 400  ------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
                                + FE FL      +PD D++F  + +     Y +  +G +
Sbjct: 924  DLPDAECPKCGSMYIKDGQDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHAYTKELFGED 983

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
             V +  T G++  K A   V +  Q  +  + R  +                        
Sbjct: 984  YVYRAGTIGTVADKTAYGYV-KGYQNDHDLLMRGAE------------------------ 1018

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS---DLPVT 556
                     +  +     G+ R    H  GI  V     +    P+         +   T
Sbjct: 1019 ---------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIHDFSPIQYPADDKNAEWKTT 1069

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY------- 609
             F+   I    L+K D LG    T ++   D          +     +  + +       
Sbjct: 1070 HFDFHSIHD-NLLKLDILGHDDPTAIRMLQDLSG--IDPKTIPTDDPEVMKIFASPDVLG 1126

Query: 610  ----HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                 +L   GTLGI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1127 VTEEQILCKTGTLGIPEFGTRFVRQMLEETKPSTFSELLQISGLSHG-------TDVWLG 1179

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +   + K    + 
Sbjct: 1180 NANELIYNGTCELKDVIGCRDDIMVYL--------IYKGLESSLAFKIMEFVRKGKGLQP 1231

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     ++    K+ +      +  ++      Y F K+HAAAY +++ + A+ K H+P+
Sbjct: 1232 E-----WVEEMKKHDVPDWYIDSCTKI-----KYMFPKAHAAAYVLMAVRIAYFKVHHPI 1281

Query: 786  EFLAASMTLEMDNVEKIKKF---------CQDARQFNIQIMPPS---------------- 820
             + A   T+  D+ E               ++     +   P                  
Sbjct: 1282 LYYATYFTVRADDFELDIMIKGASSIRAKMEEINAKGLDASPKEKAVLTVLELSLEMCER 1341

Query: 821  ---------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                       +   +F V  +++     A+ GVGT  A +I++A  +  F S ED   R
Sbjct: 1342 GFGFHKVDLYKSSATEFIVDGDKLLPPFNALNGVGTNAALNIVKARENGHFLSKEDLQQR 1401

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                +L + V+E+L   G L+  
Sbjct: 1402 A---RLTKTVVENLSEHGCLEGL 1421



 Score = 97.2 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S ++G +S+   +++ A    PAIAITD   + +  E    A    I+ I 
Sbjct: 330 VELHTHSTMSQMDGVVSVGRYIEQAAKWGHPAIAITDHGVVQAFPEAYGAAKKHDIKVIY 389

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           +V 
Sbjct: 390 GMEANVVDDGVPIAYNSDHRHLLEEEYVVF 419


>gi|310827165|ref|YP_003959522.1| DNA polymerase III PolC [Eubacterium limosum KIST612]
 gi|308738899|gb|ADO36559.1| DNA polymerase III PolC [Eubacterium limosum KIST612]
          Length = 1369

 Score =  225 bits (572), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 153/898 (17%), Positives = 275/898 (30%), Gaps = 177/898 (19%)

Query: 94   PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSG 153
                 I++      G + L +LVS  ++ +   +  RI  S L     E LI+ +   +G
Sbjct: 540  GDTYHIIIYAKNQAGLKDLYKLVSEAHI-NYFYRRPRIPKSLLAA-HRENLIIGSACEAG 597

Query: 154  PIDRAFFFNSSQVAEKRLLTFKKLF-----GDRLYV---NLQRHRGYDRYRESQVVQLAY 205
             + +A   N  +     +  F   F     G+  Y+                 ++V+L  
Sbjct: 598  ELYKAVLKNVPKNRLDEIADFYDYFEVQPLGNNEYLLRNETVHSMEELADVNRRIVELGR 657

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
                 +VAT +  F+   D    ++L A        +    +    +           + 
Sbjct: 658  EKGKLVVATGDVHFVDPSDAYFREILQAGQ----GYKDSHEQPPLYYRSTQEMLDEFTYV 713

Query: 266  DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
            D   A E  V   RR + +     PI         +      ++E+R+            
Sbjct: 714  DPQTAYELVVTNPRRVAELFDDVKPIPDGTFPPIIEG----SDDEIRDMVYKKAHEMYGD 769

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                         QR+  EL+ I    +S  +LI    +  + ++   VG  RGS   S+
Sbjct: 770  PL------PDIVEQRVKRELDSIIGNGYSVLYLIAQKLVHHSLEDGYLVG-SRGSVGSSL 822

Query: 386  TAYALTITDIDPLR-----------------------------------------FSLLF 404
             A    IT+++ L                                          F + F
Sbjct: 823  VAMLCGITEVNSLAPHYVCPNCKHYEFFDSTKVGVGPDLPNADCPECGHPMNKDGFDIPF 882

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  +    PD D++F  + + E   Y +  +G  +V +  T  +L  K A   V   
Sbjct: 883  ETFLGFEGDKEPDIDLNFSGENQPEAHHYTEVLFGEGKVYRAGTIATLADKTAFGYV--- 939

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
                        K   ++         +                           G+ R 
Sbjct: 940  ------------KNFFDENGVTAPRAEMERVIE-------------------GCAGVKRT 968

Query: 525  ASTHAAGI--VIGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  G+  V  D+ +    P+             T F+   I    L+K D LG    
Sbjct: 969  TGQHPGGVMVVPKDKDIYDFTPIQYPADDRDCGTMTTHFDYHSI-SGRLLKLDILGHDDP 1027

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQLESSGMRQ 630
            T+L+   D       ++ L         T                GT GI +  ++ +RQ
Sbjct: 1028 TMLRMLKDITGLDPQEIPLDDEKVISLFTGTSALDLKDDDFDIPLGTCGIPEFGTNFVRQ 1087

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
             +   +P    D+I +  L          V+ N              +      T   +I
Sbjct: 1088 MVLDTKPTAFSDLIRISGLSH-----GTDVWTNNAQ----------DLVRSGTATIKDVI 1132

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
                 + +  +  G +  E+  +   + K      D++     +   +N +      +  
Sbjct: 1133 CTRDDIMLGLISMGLAPKESFSIMEHVRKGKGLTEDEE-----AYMKENNVPAWYIDSCK 1187

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK------ 804
            ++      Y F K+HAAAY +++++ A+ K +YP+ + A   ++        K       
Sbjct: 1188 KI-----KYMFPKAHAAAYVMMAFRIAYYKVYYPLAYYATYYSIRAKEFNLEKMTNGKET 1242

Query: 805  ---------------------------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIY 836
                                          +            V      +FK+  N + 
Sbjct: 1243 VKKTLAEIRSQGNKASNKDQQLLTSLELALEMYCRGFGFKNVDVYESHYSEFKIIGNDLL 1302

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              L AI G+G   A  I E +  +PF S ED  +R    K+N+  +E L   G L   
Sbjct: 1303 PPLNAIDGLGDKAAMQIYEEAQKRPFISKEDLQTRA---KVNKSNIEKLEQFGCLSSL 1357



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 34/86 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS YS ++    +  I+ +       AI ITD   L +  E    +   GI+ + 
Sbjct: 269 VELHLHSQYSSMDAVSKVAKIMKQANDFGHDAIGITDHGVLQAYPEMMSLSKKYGIKVLY 328

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +   D   +T +    F    
Sbjct: 329 GVEGYLVDDDQYIVTGEQNESFEGEF 354


>gi|73662813|ref|YP_301594.1| DNA polymerase III PolC [Staphylococcus saprophyticus subsp.
            saprophyticus ATCC 15305]
 gi|123642441|sp|Q49X49|DPO3_STAS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|72495328|dbj|BAE18649.1| DNA polymerase III alpha chain PolC-type [Staphylococcus
            saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 1438

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 157/918 (17%), Positives = 302/918 (32%), Gaps = 175/918 (19%)

Query: 80   QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEI 139
              N  ++N+          + L+V   +G + L ++VS   L+    ++ RI  S L E 
Sbjct: 595  DINTSLSNEDAYKRARPNHVTLIVQNQDGLKNLFKIVSAS-LVQYYYRTPRIPRSLLDEY 653

Query: 140  GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLY-----VNLQRHRGY 192
              EG+++ +    G +  A         E+    +   ++    LY       L R    
Sbjct: 654  -REGILVGSACDEGEVFTAVMQKDQSQVERIAKYYDFIEVQPPALYQDLIDRELVRDNET 712

Query: 193  DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDH 252
                 +++++    + +P++AT N+ +L+E D  A  +L+A      +++   P+     
Sbjct: 713  LHEIYNRLIRAGDVNNIPVIATGNAHYLNEHDAIARKILIAAQPGNPLNRSTLPK--AHF 770

Query: 253  YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELR 312
               +       F    +A E  V+     +  ++   PI         +        E+R
Sbjct: 771  RTTDEMLDELHFLGEEKAYELVVQNTNDLADKIERVVPIKDELFTPRMEG----ANEEIR 826

Query: 313  NKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNI 372
              +    +              Q    RL+ EL  I    FS  +LI    ++ +  +  
Sbjct: 827  EMSYDNAKALYGDDL------PQIVIDRLEKELESIIGNGFSVIYLISQRLVKKSLNDGY 880

Query: 373  PVGPGRGSGAGSVTAYALTITDIDPLR--------------------------------- 399
             VG  RGS   S  A    IT+++PL                                  
Sbjct: 881  LVG-SRGSVGSSFVATMTEITEVNPLPPHYICPECKQSEFFDDGSVGSGFDLPDKKCESC 939

Query: 400  --------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
                      + FE FL      +PD D++F  + + E   Y +  +G ++V +  T G+
Sbjct: 940  GCDLIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPEAHNYTKELFGEDKVFRAGTIGT 999

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            +  K A   V +          R  +                                 +
Sbjct: 1000 VAEKTAFGFV-KGYLNDQGIHKRGAE---------------------------------I 1025

Query: 512  LEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKA 566
              + +   G+ R    H  GI+       +    P+             T F+   I   
Sbjct: 1026 DRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPVQFPADDQGSSWMTTHFDFHSIHD- 1084

Query: 567  GLIKFDFLGLKTLTLLQKSLDFL---------AQRGVKVDLSLIPFDDHETYHLLTTKGT 617
             ++K D LG    T+++   D             +      S        +  +L   GT
Sbjct: 1085 NVLKLDILGHDDPTMIRMLQDLSGIDPKTIPVDDKETMGIFSSPEPLGVTSDEILCKTGT 1144

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
             G+ +  +  +RQ LE  +P    +++ +  L                N ++ I S    
Sbjct: 1145 FGVPEFGTGFVRQMLEDTKPTTFSELVRISGLSHG-------TDVWLGNAQDLIRSGKCD 1197

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            +  ++     +++Y         + +G   S A      + K      D         A 
Sbjct: 1198 LASVICCRDDIMVYL--------MYNGLEPSLAFKTMEFVRKGKGLTDDMV------EAM 1243

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
             +       ++    +     Y F K+HAAAY +++ + A+ K HYP+ + A+  T+   
Sbjct: 1244 VDNEVPDWYLDSCRKI----KYMFPKAHAAAYVLMAVRIAYFKVHYPLYYYASYFTVRAS 1299

Query: 798  NVEKIKKF---------------------------------CQDARQFNIQIMPPSVNTP 824
            + + I                                      +  Q   ++ P S+   
Sbjct: 1300 DFDLISMIKDKESIRNTVNDMYSRYMDLAKKEKDTLTVLEIMNEMAQRGYRMQPISLEKS 1359

Query: 825  CV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
               +F +  + +     A+ G+G   A+ I+EA  + PF S ED   +     L+++V+E
Sbjct: 1360 KAFEFIIEGDTLIPPFIAVPGLGENVAQRIVEARDEGPFLSKEDLNKKA---GLSQKVIE 1416

Query: 884  SLVFAGALDCFGYSRMQL 901
             L   G+L      + QL
Sbjct: 1417 YLDELGSLPNL-PDKAQL 1433



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 38/90 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+S S ++G  ++++ +D+ A     AIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTSMSQMDGIPNISDYVDQAAKWGHKAIAVTDHNVVQAFPDAHSAAEKNGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G +  +                 T   +V 
Sbjct: 396 GMEGMLVDDGVPIAYKPKDCDLKTATYVVF 425


>gi|297544667|ref|YP_003676969.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii
            subsp. mathranii str. A3]
 gi|296842442|gb|ADH60958.1| DNA polymerase III, alpha subunit [Thermoanaerobacter mathranii
            subsp. mathranii str. A3]
          Length = 1406

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 157/935 (16%), Positives = 303/935 (32%), Gaps = 196/935 (20%)

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               G++        +   +++   ++       V  + +LV    G + L E++S+  L 
Sbjct: 556  KELGVK-------KVKDINDILRESEVDIKKLPVYHVTILVKDQRGLRNLYEIISKSNL- 607

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLFGDR 181
            +   ++ RI  S L  +  EGLI+ +    G + RA   N  +   E  +  +       
Sbjct: 608  EYFHRTPRIPKSLLISM-REGLIIGSACEQGEVFRAILSNLEEKKLENIISFYD------ 660

Query: 182  LYVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
             Y+ +Q     +              +    ++  L   +   +VAT +  FL   D   
Sbjct: 661  -YLEVQPVGNNEFLIEKGEIKSVEELKEINRRIYLLGKKYNKLVVATGDVHFLDPWDDIY 719

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
              +LMA          DR +        +       +     A E  ++   + + +++ 
Sbjct: 720  RKILMA---GKGYKDADR-QPPLYFKTTDEMLKEFEYLGEEVAKEIVIDNPNKIADLIEE 775

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              PI         +      E ELR   +                  +  + RLD ELN 
Sbjct: 776  VKPIPDGTFPPVIEG----AEEELRKLTLDKAHEIYGDPL------PEIVQNRLDRELNS 825

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------- 399
            I    ++  ++I    +  + K+   VG  RGS   S+ A    IT+++PL         
Sbjct: 826  IINNGYAVMYIIAQKLVSKSLKDGYLVG-SRGSVGSSLVATMSGITEVNPLPPHYVCPNC 884

Query: 400  ---------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDR 426
                                             F + FE FL  +    PD D++F  + 
Sbjct: 885  KYSEFITDGSYGCGVDMPDKICPHCGTLMKKDGFDIPFEVFLGFEGDKEPDIDLNFSGEY 944

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            +    +Y +  +G   V +  T G+L  K A   V +  +                    
Sbjct: 945  QPIAHKYTEELFGKGHVFRAGTIGTLADKTAYGFVKKYFE-------------------- 984

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVP 544
                           R        +  ++    G+ R    H  GI++  +   +    P
Sbjct: 985  --------------ERSLVVHKSEIKRLTMGCTGVKRTTGQHPGGIMVVPKDKSIYDFTP 1030

Query: 545  MYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            +     ++    +T           L+K D LG    T+++   D       ++ L    
Sbjct: 1031 IQHPADAEDTDVITTHFDYHSISGRLLKLDILGHDDPTVIRMLEDLTGVNAREIPLDDKK 1090

Query: 603  FDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                 T           L T  GTLG+ +  +  +RQ L   +P    +++ +  L    
Sbjct: 1091 TMSLFTSVEALGIDPEELNTPVGTLGLPEFGTKFVRQMLIETRPTTFAELVRISGLSHG- 1149

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N ++ I      +  ++     +++Y         +  G     +  +
Sbjct: 1150 ------TDVWLNNAQDIIREGIATLKEVISTRDDIMLYL--------ISKGMDKKLSFKI 1195

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K      ++          K+G+      +  ++      Y F K+HA AY +++
Sbjct: 1196 MENVRKGKGVTPEEI-----EEMKKHGVPNWFIESCQKI-----KYMFPKAHAVAYVIMA 1245

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQDARQFNIQIMPPS---- 820
            ++ A+ K HYP  F A   T+  D+          + IK   ++         P      
Sbjct: 1246 FRIAYFKVHYPEAFYATYFTVRADDFNLDIVLKGRDSIKNAIKEIEAKGNNASPKEKSLL 1305

Query: 821  ---------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                                   +  V F + +  I   L +++GVG   A+ I +   +
Sbjct: 1306 TVLEVALEMYLRGFKFINVDLYKSDAVKFLITNEGILPPLNSLEGVGIQAAKTIAQEREN 1365

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              F S+EDF +R    K+++ V+E L   G L+  
Sbjct: 1366 GKFLSVEDFRNRT---KVSKTVIEILRKYGCLNDL 1397



 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 35/88 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S   ++ + A     AIAITD   + +  E  + +   G++ I 
Sbjct: 308 VELHLHTQMSSMDAVASATEVIKRAAKWGHKAIAITDHAVVQAYPEAMEASYKYGVKVIY 367

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
           G +  +       +     +      ++
Sbjct: 368 GVEGYLVDDGVPIVMGDTDSTLDDEFTV 395


>gi|289578391|ref|YP_003477018.1| DNA polymerase III subunit alpha [Thermoanaerobacter italicus Ab9]
 gi|289528104|gb|ADD02456.1| DNA polymerase III, alpha subunit [Thermoanaerobacter italicus Ab9]
          Length = 1406

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 157/935 (16%), Positives = 303/935 (32%), Gaps = 196/935 (20%)

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               G++        +   +++   ++       V  + +LV    G + L E++S+  L 
Sbjct: 556  KELGVK-------KVKDINDILRESEVDIKKLPVYHVTILVKDQRGLRNLYEIISKSNL- 607

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLFGDR 181
            +   ++ RI  S L  +  EGLI+ +    G + RA   N  +   E  +  +       
Sbjct: 608  EYFHRTPRIPKSLLISM-REGLIIGSACEQGEVFRAILSNLEEKKLENIISFYD------ 660

Query: 182  LYVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
             Y+ +Q     +              +    ++  L   +   +VAT +  FL   D   
Sbjct: 661  -YLEVQPVGNNEFLIEKGEVKSVEELKEINRRIYLLGKKYNKLVVATGDVHFLDPWDDIY 719

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
              +LMA          DR +        +       +     A E  ++   + + +++ 
Sbjct: 720  RKILMA---GKGYKDADR-QPPLYFKTTDEMLKEFEYLGEEVAKEIVIDNPNKIADLIEE 775

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              PI         +      E ELR   +                  +  + RLD ELN 
Sbjct: 776  VKPIPDGTFPPVIEG----AEEELRKLTLDKAHEIYGDPL------PEIVQNRLDRELNS 825

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------- 399
            I    ++  ++I    +  + K+   VG  RGS   S+ A    IT+++PL         
Sbjct: 826  IINNGYAVMYIIAQKLVSKSLKDGYLVG-SRGSVGSSLVATMSGITEVNPLPPHYVCPNC 884

Query: 400  ---------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDR 426
                                             F + FE FL  +    PD D++F  + 
Sbjct: 885  KYSEFITDGSYGCGVDMPDKICPHCGTLMKKDGFDIPFEVFLGFEGDKEPDIDLNFSGEY 944

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            +    +Y +  +G   V +  T G+L  K A   V +  +                    
Sbjct: 945  QPIAHKYTEELFGKGHVFRAGTIGTLADKTAYGFVKKYFE-------------------- 984

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVP 544
                           R        +  ++    G+ R    H  GI++  +   +    P
Sbjct: 985  --------------ERSLVVHKSEIKRLTMGCTGVKRTTGQHPGGIMVVPKDKSIYDFTP 1030

Query: 545  MYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            +     ++    +T           L+K D LG    T+++   D       ++ L    
Sbjct: 1031 IQHPADAEDTDVITTHFDYHSISGRLLKLDILGHDDPTVIRMLEDLTGVNAREIPLDDKK 1090

Query: 603  FDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                 T           L T  GTLG+ +  +  +RQ L   +P    +++ +  L    
Sbjct: 1091 TMSLFTSVEALGIDPEELNTPVGTLGLPEFGTKFVRQMLIETRPTTFAELVRISGLSHG- 1149

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N ++ I      +  ++     +++Y         +  G     +  +
Sbjct: 1150 ------TDVWLNNAQDIIREGIATLKEVISTRDDIMLYL--------ISKGMDKKLSFKI 1195

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K      ++          K+G+      +  ++      Y F K+HA AY +++
Sbjct: 1196 MENVRKGKGVTPEEI-----EEMKKHGVPNWFIESCQKI-----KYMFPKAHAVAYVIMA 1245

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQDARQFNIQIMPPS---- 820
            ++ A+ K HYP  F A   T+  D+          + IK   ++         P      
Sbjct: 1246 FRIAYFKVHYPEAFYATYFTVRADDFNLDIVLKGRDSIKNAIKEIEAKGNNASPKEKSLL 1305

Query: 821  ---------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                                   +  V F + +  I   L +++GVG   A+ I +   +
Sbjct: 1306 TVLEVALEMYLRGFKFINVDLYKSDAVKFLITNEGILPPLNSLEGVGIQAAKTIAQEREN 1365

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              F S+EDF +R    K+++ V+E L   G L+  
Sbjct: 1366 GKFLSVEDFRNRT---KVSKTVIEILRKYGCLNDL 1397



 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 35/88 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S   ++ + A     AIAITD   + +  E  + +   G++ I 
Sbjct: 308 VELHLHTQMSSMDAVASATEVIKRAAKWGHKAIAITDHAVVQAYPEAMEASYKYGVKVIY 367

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
           G +  +       +     +      ++
Sbjct: 368 GVEGYLVDDGVPIVMGDTDSTLDDEFTV 395


>gi|196036920|ref|ZP_03104304.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus W]
 gi|228928866|ref|ZP_04091898.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            pondicheriensis BGSC 4BA1]
 gi|195990475|gb|EDX54459.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus W]
 gi|228830673|gb|EEM76278.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            pondicheriensis BGSC 4BA1]
          Length = 1433

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 155/923 (16%), Positives = 296/923 (32%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGGTLDKPVVATGNVHYLDPEDAMYRKILVSSQGGA-- 754

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                     P  + +   EM+  FS L E  +   EI    +  +      +    +   
Sbjct: 755  -NPLNRHSLPPVHFRTTDEMLECFSFLGE--DVAKEIVVTNTQKIASLIGDVHPVKDDLY 811

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 812  TPKIEGADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEDMKSNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      DF +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGEFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEEHRLLADETYVVF 421


>gi|267798813|gb|ACY79087.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 203

 Score =  224 bits (571), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 64/214 (29%), Positives = 104/214 (48%), Gaps = 12/214 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD  NL   ++F   A   G++PIIG    +          Q +     
Sbjct: 1   VAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
           N  +F++EE +EAH++ + +     +    RP+ 
Sbjct: 170 NEVVFITEESFEAHEIQVPIHDGYTLEDPRRPKN 203


>gi|218288332|ref|ZP_03492631.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
            LAA1]
 gi|218241691|gb|EED08864.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
            LAA1]
          Length = 1440

 Score =  224 bits (570), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 172/949 (18%), Positives = 298/949 (31%), Gaps = 211/949 (22%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            +   + A A GI          ++ D   +  Q            +LV   EG + L  L
Sbjct: 584  VHMLKDAKARGIH---------NLLDMNHLRGQIDISRVRPFHATVLVRNREGLRNLYRL 634

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  +      +  RI  S L     EGL++ T    G +  AFF   S+     LL F 
Sbjct: 635  VSIAHTQ-YLHRVPRIPKSALAR-HREGLLIGTACRQGELVEAFFRGKSEDEIDTLLEFY 692

Query: 176  KLFGDRLYVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNSLFLS 221
                   Y+ +Q    Y+              R     +V +      P+VAT +  +L 
Sbjct: 693  D------YLEIQPVSHYEPLVREGVVASFEQVRELLRNIVDIGKRLNKPVVATGDVHYLD 746

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            E D    ++ +              R T +   +              A    ++  RR 
Sbjct: 747  EHDAIFREIFLQSQKVDTKQPPLHFRTTDEMLEEFAFLGEED------ARAVVIDNPRRL 800

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
              + +   PI         D      E+E+R  A    +              +   +RL
Sbjct: 801  VALCEDVKPIPDELHTPVIDG----AEDEIRRLAYDKAKRIYGDPL------PEIVEKRL 850

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-- 399
            + ELN I    ++  +LI    +  +  +   VG  RGS   S+ A    IT+++PL   
Sbjct: 851  ERELNAIISHGYAVIYLIAHKLVTKSLSDGYLVG-SRGSVGSSLVATMTDITEVNPLPPH 909

Query: 400  ---------------------------------------FSLLFERFLNPDRMSMPDFDI 420
                                                     + FE F+  D   +PD D+
Sbjct: 910  YVCLSCHYHEFFLRGEYGSGFDLPDKACPKCGAKLHKDGQDIPFETFMGFDGDKVPDIDL 969

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  + +    RY +  +G + V +  T   +  K A   V +                 
Sbjct: 970  NFSGEYQPRAHRYTEELFGKDHVFRAGTISVVAEKTAYGYVRK----------------- 1012

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRP 538
                             F E R        +  + +   G+ R    H  G V       
Sbjct: 1013 -----------------FAEERGLVLRNAEIERLVRGCTGVKRTTGQHPGGQVVVPHYVE 1055

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T F+     +  L+K D LG    T+++     + Q    
Sbjct: 1056 IYDFTPIQYPADDTSSETLTTHFDYHSGLENCLLKLDILGHDDPTVIR-----MLQDLTG 1110

Query: 596  VDLSLIPFDDHETYHLLTTKGT--------------LGIFQLESSGMRQALEGMQPDCIE 641
            VD   IP DD +   L  +                   I +  +  +RQ LE  +P    
Sbjct: 1111 VDPKSIPLDDPDVLELFRSTRPLGVTPEEIRSTTGTYAIPEFGTRFVRQMLEDTRPTTFS 1170

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +++ +  L                N +  I      +  ++     +++Y  Q       
Sbjct: 1171 ELVRISGLSHG-------TDVWLNNAQTLIREQIATLSEVICARDDIMLYLIQ------- 1216

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
              G   + A  +   + K    + + +     +   ++G+      +      K   Y F
Sbjct: 1217 -KGLDPARAFKIMEGIRKGKGVKPEDE-----AYMREHGVPDWYIES-----GKKIKYMF 1265

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ-------------- 807
             K+HAAAY +++ + AW K H P+ F A   T+  D+ +                     
Sbjct: 1266 PKAHAAAYVLMAVRIAWFKVHRPLAFYATYFTVRADDFDVAVMTAGREAILKKIDEIEAK 1325

Query: 808  -------------------DARQFNIQIMPPSVNTPCV-DFKVGDNR--IYYSLAAIKGV 845
                               +      + +P  +       F + +    +    AAI G+
Sbjct: 1326 GNAASAKEKSFLTVLEVALEMVARGYRFLPIDLYKSHATHFLIDEEARGLRPPFAAIPGI 1385

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            G T AR++ EA+    F SLED  SR    + +R V++ L+  G LD  
Sbjct: 1386 GETAARNLYEAAQHGEFLSLEDLQSRA---RASRAVIDVLMELGCLDGL 1431



 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 39/91 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S L+G +S   ++ + A     AIAITD     +  E  Q A   G++ ++
Sbjct: 340 VELHAHTTMSALDGVVSAAALVKRAAEWGHDAIAITDHGVCQAYPEAYQAAKKHGVRLVL 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           G +  +     L +  +   P       V+ 
Sbjct: 400 GVEAYVVDDGGLLVYRECDRPLDDETEYVVF 430


>gi|228909642|ref|ZP_04073465.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200]
 gi|228849931|gb|EEM94762.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 200]
          Length = 1435

 Score =  224 bits (570), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 150/923 (16%), Positives = 293/923 (31%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 588  FEYHDQLNDSMGQGDAYKRGRPSHLTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 646

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 647  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 698

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 699  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGGA-N 757

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                           +       F    +A E  V   ++ + ++    P+       + 
Sbjct: 758  PLNRHSLPPVHFRTTDEMLECFSFLGEDKAKEVVVTNTQKVASLIGDVRPVKDDLYTPKI 817

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +      ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 818  EG----ADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 867

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 868  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 926

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 927  GFDLPDKDCPTCNVAYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 986

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 987  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1023

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1024 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGAEWR 1072

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1073 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPETLG 1131

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1132 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1184

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1185 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1236

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1237 E-----WEDDMKGNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1286

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1287 LFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1346

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1347 GYSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR 1406

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1407 ---SKVSKTIIEYLDSQGCLGDL 1426



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 334 VELHLHTPMSQMDAVTPVSRLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 394 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 423


>gi|218898970|ref|YP_002447381.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus G9842]
 gi|228902321|ref|ZP_04066478.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222]
 gi|228966763|ref|ZP_04127807.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto
            str. T04001]
 gi|218545449|gb|ACK97843.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
            cereus G9842]
 gi|228792862|gb|EEM40420.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar sotto
            str. T04001]
 gi|228857290|gb|EEN01793.1| DNA polymerase III polC-type [Bacillus thuringiensis IBL 4222]
          Length = 1433

 Score =  224 bits (570), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 150/923 (16%), Positives = 293/923 (31%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHLTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGGA-N 755

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                           +       F    +A E  V   ++ + ++    P+       + 
Sbjct: 756  PLNRHSLPPVHFRTTDEMLECFSFLGEDKAKEVVVTNTQKVASLIGDVRPVKDDLYTPKI 815

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +      ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 816  EG----ADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKDCPTCNVAYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPETLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEDDMKGNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSRLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 421


>gi|229098287|ref|ZP_04229234.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29]
 gi|228685185|gb|EEL39116.1| DNA polymerase III polC-type [Bacillus cereus Rock3-29]
          Length = 1433

 Score =  224 bits (570), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 154/923 (16%), Positives = 297/923 (32%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L +ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDQEDAMYRKILVSSQGGA-- 754

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                     P  + +   EM+  FS L E  +   EI    +  +      +    +   
Sbjct: 755  -NPLNRHSLPPVHFRTTDEMLECFSFLGE--DKAKEIVVTNTQKIASLIGDVHPVKDDLY 811

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 812  TPKIEGADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPTCNVSYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKILFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEDMKSNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATEFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSRLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 421


>gi|76581584|gb|ABA51059.1| DNA polymerase III, alpha subunit, form 1 [Burkholderia pseudomallei
            1710b]
          Length = 389

 Score =  224 bits (570), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 106/244 (43%), Gaps = 14/244 (5%)

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-------IYYSLAAIKGVGTT 848
            MD+ +K+K    D     + ++PP +N     F+            I Y L AIKG G  
Sbjct: 1    MDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKRSRTIRYGLGAIKGSGQN 60

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
                I+ A  +KPF  L DFC R+D + +NRR +E+++ AGA D    +R QLL S+   
Sbjct: 61   AIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAFDSLHENRAQLLASVPLA 120

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             + A+    N       +F    G  + +  L      +   R + E+  LGFY SGH  
Sbjct: 121  MEAAEQAAANALQ--AGLF-DIGGVPAHQHALVDEPAWDDKRRLQEEKGALGFYLSGHLF 177

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            D Y+  +R+   +   E           +A ++ S + + T++G  +      +   + E
Sbjct: 178  DAYRDEVRRFVRQKLGELKEGRDK---VVAGVIASLRTQMTQRGK-MVIALLDDGTGQCE 233

Query: 1029 ANFF 1032
               F
Sbjct: 234  VTVF 237


>gi|228998594|ref|ZP_04158181.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
 gi|228761062|gb|EEM10021.1| DNA polymerase III polC-type [Bacillus mycoides Rock3-17]
          Length = 1433

 Score =  224 bits (570), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 157/930 (16%), Positives = 296/930 (31%), Gaps = 188/930 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGGA-N 755

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                           N       F    +A E  V   ++ + ++    P+       + 
Sbjct: 756  PLNRHSLPPVYFRTTNEMLDCFSFLGEEKAKEIVVTNTQKVASLIGDVHPVKDDLYTPKI 815

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +      ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 816  EG----ADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPNCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYASDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSVGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGVDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEEMRNNNVPSWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVDAMVKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      DF +  + +     AI G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATDFIIDGDTLIPPFNAIPGLGTNAALSIVEARGNGEFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
                KL+R ++E L   G L      + QL
Sbjct: 1405 ---SKLSRTIIEYLDSQGCLGDL-PDKNQL 1430



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S+  ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTSVAKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNETHRLLADETYVVF 421


>gi|229174484|ref|ZP_04302016.1| DNA polymerase III polC-type [Bacillus cereus MM3]
 gi|228609044|gb|EEK66334.1| DNA polymerase III polC-type [Bacillus cereus MM3]
          Length = 1433

 Score =  224 bits (570), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 153/923 (16%), Positives = 296/923 (32%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  ++  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYIDPEDAMYRKILVSSQGGA-- 754

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                     P  + +   EM+  FS L E  +   EI    +  +      +    +   
Sbjct: 755  -NPLNRHSLPPVHFRTTDEMLECFSFLGE--DVAKEIVVTNTQKIASLIGDVHPVKDDLY 811

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 812  TPKIEGADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPACNVPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEDDMKSNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDIEAMAKGSASIRVRIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSRLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 421


>gi|197301360|ref|ZP_03166441.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC 29176]
 gi|197299517|gb|EDY34036.1| hypothetical protein RUMLAC_00087 [Ruminococcus lactaris ATCC 29176]
          Length = 1517

 Score =  223 bits (569), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 164/950 (17%), Positives = 306/950 (32%), Gaps = 180/950 (18%)

Query: 53   FSA-----LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
              A     ++F +      I        D+   +     N           I++L     
Sbjct: 629  AGATAEIFVKFVEMLKKDHIT-------DLKGINRFGERNVNAIRKMATHHIIILAKNDI 681

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            G   L +L+S  ++     +  RI  S L E   EGL++ +   +G + +A         
Sbjct: 682  GRYNLYQLISESHMT-YYGRRPRIPKSLLNE-HREGLVIGSACEAGELYKAILEERPAET 739

Query: 168  EKRLLTFKKLF------GDRLYVN---LQRHRGYD--RYRESQVVQLAYTHELPLVATNN 216
               L  F   +       +R  +    ++     +  +    ++V+L    + P+VAT +
Sbjct: 740  IAELADFYDYYEIQPIGNNRFMIGSSKVKNVNSEEDLQEINRKIVELGEQFKKPVVATCD 799

Query: 217  SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
              FL  ED     ++MA          D     P  +L+   EM+  F+ L  A     E
Sbjct: 800  VHFLDPEDEVYRRIIMA---GKGFDDAD---TQPPLFLRTTDEMLEEFAYLGSA--KARE 851

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
            +       +      +      +C  + ++ + ELR+           +           
Sbjct: 852  VVIDNPQKIAKMIEKISPVNPNKCPPVIQDSDQELRDICYRKAHEMYGEDL------PVQ 905

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               RL+ ELN I    ++  ++I    +  +  +   VG  RGS   S  A    IT+++
Sbjct: 906  VSSRLEKELNSIISNGYAVMYIIAQKLVWKSNADGYLVG-SRGSVGSSFVATMSGITEVN 964

Query: 397  PLR---------------------------------------------FSLLFERFLNPD 411
            PL                                              F + FE FL   
Sbjct: 965  PLSPHYYCEKCHYSDFDSEEVRAFAGGCGYDMPDRMCPKCGAKLIKAGFDIPFETFLGFK 1024

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
                PD D++F  D + +  +Y +  +G     +  T G+L  K A   V          
Sbjct: 1025 GDKEPDIDLNFSGDYQAKAHKYTEVLFGEGHTFKAGTIGTLADKTAYGFV---------- 1074

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                 K    +         I   +                       G+ R    H  G
Sbjct: 1075 -----KNYYEERGQRKRRCEIERVTE-------------------GCTGIRRSTGQHPGG 1110

Query: 532  IV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ--- 583
            IV       +++  P+          +  T F+   I    L+K D LG    T+++   
Sbjct: 1111 IVVLPHGHSINEFTPVQHPANDMECGITTTHFDYHSI-DHNLLKLDILGHDDPTMIRTLE 1169

Query: 584  -----KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
                  ++            + IP DD     L      LGI   +  G +    G+   
Sbjct: 1170 DYITSDAMPNEYNAEHPFIATEIPLDDKRVIELFHGTEVLGIKPEDIDGCKIGSLGIPEF 1229

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
              + +I +V   +P  + +++  +   +G    +     +      T    I     + I
Sbjct: 1230 GTDFVIQMVQDTKPQTLSDLIRISGLSHGTNVWLGNAQELVKSGTATISTAICTRDDIMI 1289

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
              +  G   + A  +  ++ K    + +         A K        +   + +     
Sbjct: 1290 YLINQGVESALAFTIMESVRKGKGLKPE------WEEAMKAQNVPDWYIWSCKKI----S 1339

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE----------------------- 795
            Y F K+HAAAY +++Y+ A+ K +YP+ + AA  ++                        
Sbjct: 1340 YMFPKAHAAAYVMMAYRIAYCKINYPLAYYAAYFSIRADAFSYEIMCQGREKLDYYMKDY 1399

Query: 796  ----------MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKG 844
                        +  K  K  Q+      + +P  +       F++ D ++  S A+I+G
Sbjct: 1400 KRRSDTLTKKEQDTMKDMKIVQEMYARGFEFVPVDLYKAKAKMFQIVDGKLMPSFASIEG 1459

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +G   A  + EA  D P+ SL+DF  R    K+++ V++ +   G     
Sbjct: 1460 MGDKAAEAVEEAGKDGPYLSLDDFRQRT---KVSKTVIDLMSELGLFGNL 1506



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 4/90 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--SQKACAAG--I 67
           V L  H+  S ++G   + +I+ +      PAIAITD     +  +     +        
Sbjct: 392 VELHCHTKMSDMDGVSEVKDIVKRAHDWGHPAIAITDHGVAQAFPDANHYIETLDKDDPF 451

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           + + G +  +         + G        
Sbjct: 452 KVLYGVEGYVVDDLTKIAVHAGTQTLDDTY 481


>gi|229006094|ref|ZP_04163782.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
 gi|228755170|gb|EEM04527.1| DNA polymerase III polC-type [Bacillus mycoides Rock1-4]
          Length = 1433

 Score =  223 bits (569), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 157/930 (16%), Positives = 296/930 (31%), Gaps = 188/930 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHNQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGGA-N 755

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                           N       F    +A E  V   ++ + ++    P+       + 
Sbjct: 756  PLNRHSLPPVYFRTTNEMLDCFSFLGEEKAKEIVVTNTQKVASLIGDVHPVKDDLYTPKI 815

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +      ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 816  EG----ADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPNCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYASDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSVGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGVDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEEMRNNNVPSWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVDAMVKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      DF +  + +     AI G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATDFIIDGDTLIPPFNAIPGLGTNAALSIVEARGNGEFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
                KL+R ++E L   G L      + QL
Sbjct: 1405 ---SKLSRTIIEYLDSQGCLGDL-PDKNQL 1430



 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTSVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNETHRLLADETYVVF 421


>gi|15896683|ref|NP_350032.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC
            824]
 gi|15026532|gb|AAK81372.1|AE007841_7 DNA polymerase III (alpha subunit) [Clostridium acetobutylicum ATCC
            824]
 gi|325510847|gb|ADZ22483.1| DNA polymerase III (alpha subunit) [Clostridium acetobutylicum EA
            2018]
          Length = 1452

 Score =  223 bits (569), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 156/928 (16%), Positives = 300/928 (32%), Gaps = 196/928 (21%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            D+D+    + + + +         ++L     G + L +LVS  +L +   +  RI  S 
Sbjct: 600  DVDIYSVDEESKKEEYKKLRTYHAIILAKNYVGLKNLYKLVSYSHL-NYFYKRPRILKS- 657

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSS-QVAEKRLLTFKKLFGDRLYVNLQRHRGYD- 193
            L +  +EGLI+ +  S G + +A       +  E     +        Y+ +Q     D 
Sbjct: 658  LYKKYSEGLILGSACSEGELFQAILLGKPDEEVEDIARDYD-------YLEIQPLGNDDY 710

Query: 194  -------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                         +    ++++L      P+VAT +  F+  ED E +  ++        
Sbjct: 711  LIRNGQVPNKEAIKDINRKIIELGEKLNKPVVATGDVHFIDPED-EIYRRILEAGQGFKD 769

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            +    P          +           +A E  V    + S + +  +PI P       
Sbjct: 770  ADNQAPLYLRTTEEMLQEFSYLGRE---KAYEVVVTNTNKISDMCEQISPISPEKCPPHI 826

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            D  ++  ++    KA            +      +  +QRLD EL  I +  FS  ++I 
Sbjct: 827  DGCEQTIKDIAYEKAHE----------LYGDPLPEIVQQRLDKELESIIKNGFSVMYIIA 876

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               +  + ++   VG  RGS   S  A    IT+++ L                      
Sbjct: 877  QKLVWKSNEDGYLVG-SRGSVGSSFVANMTGITEVNSLPPHYRCPKCKYSDFSDYGVKNG 935

Query: 400  -------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                                 + FE FL  +    PD D++F  + + +  RY +  +G 
Sbjct: 936  FDLPDKTCPVCGEPLTKDGIDIPFETFLGFNGDKEPDIDLNFSGEYQAKAHRYTEVIFGK 995

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
                +  T G++  K A   V +  +                                  
Sbjct: 996  GTTFKAGTIGTIAEKTAFGYVKKYYE---------------------------------- 1021

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYR---DVRSDLPV 555
             +    +   ++ IS+   G+ R    H  GI++    R + +  P+     D  SD+  
Sbjct: 1022 EKSIPVNKAEIIRISRGCTGIKRTTGQHPGGIIVVPKGREIFEFCPVQHPADDPNSDIIT 1081

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T F+   I+       + L L  L     ++  + Q    ++   IP DD ET  L ++ 
Sbjct: 1082 THFDYHSID------QNLLKLDILGHDDPTVIRMLQDITGINPHEIPMDDKETMSLFSST 1135

Query: 616  G--------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
                           T GI +  +  +R  L    P    D+I +  L          V+
Sbjct: 1136 KALGVTPEQINSKVGTFGIPEFGTKFVRGMLLDTMPKTFSDLICISGLSH-----GTDVW 1190

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
                            +      T    +     + I  +  G   + A  +   + K  
Sbjct: 1191 LGNA----------KDLIDQGIVTLSEAVCTRDDIMIYLIKKGLPPNTAFKIMELVRKGK 1240

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              +  K+   + +   ++ + +    +  ++      Y F K+HAAAY +++++ AW K 
Sbjct: 1241 ALKDPKKWAEYEALMREHEVPEWYIDSCRKI-----KYMFPKAHAAAYVMMAFRIAWFKV 1295

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQ---------------------------------D 808
            H P  + AA  ++     +                                        +
Sbjct: 1296 HIPKAYYAAYFSIRAKAFDAEFMIFGKEKVKQKMKEIQMMGNEAGPKDKDMYDDLEIVLE 1355

Query: 809  ARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEA-SADKPFDSLE 866
              +     +P  +       F V ++ +   + +I G+G   A  I  A   +KP  S++
Sbjct: 1356 MYERGFNFLPIDIYKSHATKFLVEEDGLRPPINSISGMGNVAAEGIYNAMQEEKPISSIQ 1415

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCF 894
            D   R    K+    ++SL   G L   
Sbjct: 1416 DLKKRA---KIGNSAIDSLRKFGCLKGL 1440



 Score = 77.9 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-CAA-GIQP 69
           V L +H+  S ++   S  +++ +  +    +IAITD   + +  E  +        ++ 
Sbjct: 341 VELHMHTKMSQMDAMTSATDLIKRAMSWGMKSIAITDHGVVQAFPEAHKLLGRDNPDMKI 400

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           I G +  +       +TN       T   ++
Sbjct: 401 IYGVEAYLAPDKKPSVTNAKDQSIDTTYCVL 431


>gi|75760862|ref|ZP_00740876.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
            israelensis ATCC 35646]
 gi|74491646|gb|EAO54848.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
            israelensis ATCC 35646]
          Length = 1435

 Score =  223 bits (569), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 150/923 (16%), Positives = 293/923 (31%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 588  FEYHDQLNDSMGQGDAYKRGRPSHLTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 646

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 647  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 698

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 699  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGGA-N 757

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                           +       F    +A E  V   ++ + ++    P+       + 
Sbjct: 758  PLNRHSLPPVHFRTTDEMLECFSFLGEDKAKEVVVTNTQKVASLIGDVRPVKDDLYTPKI 817

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +      ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 818  EG----ADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 867

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 868  HKLVKKSLVDGYLVGX-RGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 926

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 927  GFDLPDKDCPTCNVAYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 986

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 987  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1023

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1024 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGAEWR 1072

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1073 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPETLG 1131

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1132 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1184

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1185 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1236

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1237 E-----WEDDMKGNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1286

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1287 LFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1346

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1347 GYSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR 1406

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1407 ---SKVSKTIIEYLDSQGCLGDL 1426



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 334 VELHLHTPMSQMDAVTPVSRLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 394 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 423


>gi|288556947|ref|YP_003428882.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4]
 gi|288548107|gb|ADC51990.1| DNA polymerase III PolC [Bacillus pseudofirmus OF4]
          Length = 1432

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 155/912 (16%), Positives = 298/912 (32%), Gaps = 191/912 (20%)

Query: 88   QGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIML 147
            QG           +L  T EG + L +LVS  + ++   ++ RI  S LQ+   +GL++ 
Sbjct: 598  QGNFTRQRPSHCTILAQTQEGLKNLYQLVSMSH-VEYFFRTPRIPRSQLQK-HRKGLLIG 655

Query: 148  TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVV------ 201
            T    G +       S +  E+    +        Y+ +Q    Y    E ++V      
Sbjct: 656  TACDKGEVFEGMMQKSPEEVEEIAKFYD-------YLEIQPLENYQHLIEKELVKNDESL 708

Query: 202  --------QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                    +L    + P+VAT N+ +L++ED     +L+A           +        
Sbjct: 709  KEIVSNIVELGEKLDKPVVATGNAHYLNKEDAIYRKILIASQGGA-NPLNKQTLPPVHFK 767

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
              +       F    +A +  VE  ++ + +++   PI  +    + +      ++E+R 
Sbjct: 768  TTDEMIDAFAFLGDDKAKKLVVENTQKVADLVEEIHPIPDQLYTPKIEG----ADDEIRE 823

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
             + +                 +    R++ EL  I    F+  +LI    ++ +  +   
Sbjct: 824  MSYSRARSIYGDDL------PEIVEARIEKELKSIIGHGFAVIYLISQKLVKKSLIDGYL 877

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLR---------------------------------- 399
            VG  RGS   S  A    IT+++PL                                   
Sbjct: 878  VG-SRGSVGSSFVATMTEITEVNPLPPHYVCPNCQHSYFFNDGSVGSGFDLPDKDCPECG 936

Query: 400  -------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
                     + FE FL      +PD D++F  + +     Y +  +G E V +  T G++
Sbjct: 937  TAYVKDGQDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHHYTKELFGEEYVYRAGTIGTV 996

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512
              K A   V +  Q  +    R  +                                 + 
Sbjct: 997  AEKTAYGYV-KGYQGDHDLHMRGAE---------------------------------ID 1022

Query: 513  EISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAG 567
             +     G+ R +  H  GI+       +    P+         +   T F+   I    
Sbjct: 1023 RLVSGCTGVKRTSGQHPGGIIVVPDYMDIYDFTPIQFPADDKTAEWKTTHFDFHSIHD-N 1081

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY-----------HLLTTKG 616
            L+K D LG    T+++   D          +     +  + +            +L   G
Sbjct: 1082 LLKLDILGHDDPTVIRMLQDLSG--IDPKTIPTDDPEVMKIFSGPDVLGVTEDQILCKTG 1139

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            TLGI +  +  +RQ LE  +P    +++ +  L                N  E I +   
Sbjct: 1140 TLGIPEFGTRFVRQMLEETKPSTFSELVQISGLSHG-------TDVWLNNANELIYNGTC 1192

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
             +  ++     +++Y         +  G   S A  +   + K    + +     ++   
Sbjct: 1193 ELKDVIGCRDDIMVYL--------IYKGLEPSLAFKIMEFVRKGKGLQPE-----WVEEM 1239

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
             K+ +      +  ++      Y F K+HAAAY +++ + A+ K H+P+ + A+  T+  
Sbjct: 1240 KKHDVPDWYIGSCTKI-----KYMFPKAHAAAYVLMAVRIAYFKVHHPILYYASYFTVRA 1294

Query: 797  DNVEKIKKFCQ---------------------------------DARQFNIQIMPPSVNT 823
            D+ +                                        +  +         +  
Sbjct: 1295 DDFDLDTMIKGSTAIKAKIEEINAKGLDASPKEKAVLTVLELALEMCERGFSFKKVDLYE 1354

Query: 824  PCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                +F V    +     A+ GVGT  A +I++A     F S ED   +    +L + VL
Sbjct: 1355 SSATEFIVDGMSLLPPFNAMTGVGTNAALNIVKAREGGEFLSKEDLQQKA---RLTKTVL 1411

Query: 883  ESLVFAGALDCF 894
            E L   G L   
Sbjct: 1412 EHLDDHGCLAGM 1423



 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 38/90 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+S S ++G  S    +++ A    PAIAITD   + S  E        GI+ + 
Sbjct: 332 VELHLHTSMSQMDGMTSAGKYVEQAAKWGHPAIAITDHGVVQSFPEAYGAGKKHGIKVLY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+      T   +V 
Sbjct: 392 GVEANLVDDGVPIAYNEANRELMTEEYVVF 421


>gi|148380379|ref|YP_001254920.1| DNA polymerase III, alpha subunit [Clostridium botulinum A str. ATCC
            3502]
 gi|153932951|ref|YP_001384598.1| DNA polymerase III PolC [Clostridium botulinum A str. ATCC 19397]
 gi|153935522|ref|YP_001388114.1| DNA polymerase III PolC [Clostridium botulinum A str. Hall]
 gi|148289863|emb|CAL83971.1| DNA polymerase III PolC-type [Clostridium botulinum A str. ATCC 3502]
 gi|152928995|gb|ABS34495.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum A str. ATCC 19397]
 gi|152931436|gb|ABS36935.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum A str. Hall]
          Length = 1432

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 149/905 (16%), Positives = 283/905 (31%), Gaps = 189/905 (20%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  +++L   A G + L +LVS+  L +   +  R+  S + E   EGLI+ +   +
Sbjct: 603  KEPTHHLIILAKNAVGLKNLYKLVSKSNL-EYFFKRPRMAKSLINEY-KEGLIIGSACEA 660

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRES 198
            G I +      ++   K ++ F        Y+ +Q     +                   
Sbjct: 661  GQIYKEILKGKTKEELKNMIDFYD------YLEIQPLGNNEFLVKNGSVKDEKELEEINK 714

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++ +L   +  P+VAT +  FL EE +E    ++        +    P          + 
Sbjct: 715  KICELGEFYNKPVVATCDVHFLDEE-HEVFRRILMSGQGFSDADNQPPLYFRTTEEMLKE 773

Query: 259  EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
                             E+    +  +      +    E+      +  E ++R   +  
Sbjct: 774  FEYLGEE-------KAKEVVIYNTNKIADMIDEIKPIPEETFPPKIEGAEEDIRRMTIEK 826

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
                            +   +RL  ELN I    ++  +LI    +  + ++   VG  R
Sbjct: 827  AHSIYGDPL------PEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SR 879

Query: 379  GSGAGSVTAYALTITDIDPLR--------------------------------------- 399
            GS   S  A    IT+++ L                                        
Sbjct: 880  GSVGSSFAATMSDITEVNGLPPHYVCPKCKYSEFFTDGSVGSGADLEDKDCPNCGTKLIK 939

Query: 400  --FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
                + FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A
Sbjct: 940  DGHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTA 999

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
               V + L                                    +    +   +  +S+ 
Sbjct: 1000 YGFVKKYLD----------------------------------EKNIKANNAEIERLSKG 1025

Query: 518  LEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFD 572
              G+ R +  H  GI  V  D  +    P+         D+  T F+   I    L+K D
Sbjct: 1026 CTGVKRTSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSI-SGRLLKLD 1084

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQL 623
             LG    T+L+   D        V L         T           +    GT G+ + 
Sbjct: 1085 ILGHDDPTVLRMLQDLTQVDPKSVPLGDPKVISLFTSPEALGVTEEDIDCPVGTYGLPEF 1144

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +RQ L   +P    +++ +  L          V+ N      K             
Sbjct: 1145 GTKFVRQMLLDTKPKSFAELVRISGLSH-----GTDVWLNNAQYFIKEGYT--------- 1190

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
              +  I  ++ +M             A  +   + K      +++     +   ++ +  
Sbjct: 1191 TIKDCISTRDDIMVYLLQ-KELPPKSAFTIMEKVRKGKGLTEEQE-----ALMKEHDVPD 1244

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--- 800
                +  ++      Y F K HA AY +++ + A+ K +YP  + A   ++  D+ +   
Sbjct: 1245 WYIESCKKI-----KYMFPKGHAVAYVMMAMRIAYFKVYYPRAYYATYFSVRADDFDADL 1299

Query: 801  ------------------------------KIKKFCQDARQFNIQIMPPSVNTPCV-DFK 829
                                           I + C +  +  I+ +   +       F 
Sbjct: 1300 IVKGEEKIKEKMNELYAMGNNITQKDKGLLTILEICYEMYKRGIKFLKVDLYKSNATKFL 1359

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +  + I   L+A++GVG   A+ I EA  +  F S ED   R    K  + V+E+L   G
Sbjct: 1360 IEGDSIRPPLSALQGVGKNAAKSIEEARLEGEFISKEDLRLRT---KATKTVIETLENHG 1416

Query: 890  ALDCF 894
             L   
Sbjct: 1417 CLRGM 1421



 Score = 97.6 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 34/86 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++G   ++ ++ + A     A+AITD   + +  +    A    I+ I 
Sbjct: 333 VELHMHSQMSAMDGMTPVSELVKRAAKWGHKAVAITDHGVVQAYPDAMSAAKKGNIKVIY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       ++  G        
Sbjct: 393 GIEAYLVDDGVPIVSKAGDKTIEDTF 418


>gi|228992546|ref|ZP_04152473.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
 gi|228767180|gb|EEM15816.1| DNA polymerase III polC-type [Bacillus pseudomycoides DSM 12442]
          Length = 1433

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 157/930 (16%), Positives = 296/930 (31%), Gaps = 188/930 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGGA-N 755

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                           N       F    +A E  V   ++ + ++    P+       + 
Sbjct: 756  PLNRHSLPPVYFRTTNEMLDCFSFLGEEKAKEIVVTNTQKVASLIGDVHPVKDDLYTPKI 815

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +      ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 816  EG----ADDETRDMSYTMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPNCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPTCNIPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYASDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSVGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGVDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEEMRNNNVPSWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVDAMVKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      DF +  + +     AI G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATDFIIDGDTLIPPFNAIPGLGTNAALSIVEARGNGEFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
                KL+R ++E L   G L      + QL
Sbjct: 1405 ---SKLSRTIIEYLDSQGCLGDL-PDKNQL 1430



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTSVSKLVSQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNETHRLLADETYVVF 421


>gi|258511408|ref|YP_003184842.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
            subsp. acidocaldarius DSM 446]
 gi|257478134|gb|ACV58453.1| DNA polymerase III, alpha subunit [Alicyclobacillus acidocaldarius
            subsp. acidocaldarius DSM 446]
          Length = 1440

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 171/949 (18%), Positives = 299/949 (31%), Gaps = 211/949 (22%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            +   + A A GI          ++ D   +  Q            +LV   EG + L  L
Sbjct: 584  VHMLKDAKARGIH---------NLLDMNHLRGQIDISRVRPFHATVLVRNREGLRNLYRL 634

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  +      +  RI  S L     EGL++ T    G +  AFF   S+     LL F 
Sbjct: 635  VSIAHTQ-YLHRVPRIPKSALAR-HREGLLIGTACRQGELVEAFFRGKSEDEIDTLLEFY 692

Query: 176  KLFGDRLYVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNSLFLS 221
                   Y+ +Q    Y+              R     +V++      P+VAT +  +L 
Sbjct: 693  D------YLEIQPVSHYEPLVREGVVASFEQVRELLRNIVEIGKRLNKPVVATGDVHYLD 746

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            E D    ++ +              R T +   +              A    ++  RR 
Sbjct: 747  EHDAIFREIFLQSQKLDTKQPPLHFRTTDEMLEEFAFLGEED------ARTVVIDNPRRL 800

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + +     PI         +      E+E+R  A    +              +   +RL
Sbjct: 801  AALCDDVKPIPDELHTPVIEG----AEDEIRRLAYDKAKRIYGDPL------PELVEKRL 850

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-- 399
            + ELN I    ++  +LI    +  +  +   VG  RGS   S+ A    IT+++PL   
Sbjct: 851  ERELNAIISHGYAVIYLIAHKLVTKSLSDGYLVG-SRGSVGSSLVATMTDITEVNPLPPH 909

Query: 400  ---------------------------------------FSLLFERFLNPDRMSMPDFDI 420
                                                     + FE F+  D   +PD D+
Sbjct: 910  YVCLSCHYHEFFLRGEYGSGFDLPDKACPNCGAKLHKDGQDIPFETFMGFDGDKVPDIDL 969

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  + +    RY +  +G + V +  T   +  K A   V +                 
Sbjct: 970  NFSGEYQPRAHRYTEELFGKDHVFRAGTISVVAEKTAYGYVRK----------------- 1012

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRP 538
                             F E R        +  + +   G+ R    H  G V       
Sbjct: 1013 -----------------FAEERGLVLRNAEIERLVRGCTGVKRTTGQHPGGQVVVPHYVE 1055

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T F+     +  L+K D LG    T+++     + Q    
Sbjct: 1056 IYDFTPIQYPADDTSSETLTTHFDYHSGLENCLLKLDILGHDDPTVIR-----MLQDLTG 1110

Query: 596  VDLSLIPFDDHETYHLLTTKGT--------------LGIFQLESSGMRQALEGMQPDCIE 641
            VD   IP DD +   L  +                   I +  +  +RQ LE  +P    
Sbjct: 1111 VDPKSIPLDDPDVLELFRSTRPLGVTPEEIRSTTGTYAIPEFGTRFVRQMLEDTRPTTFS 1170

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +++ +  L                N +  I      +  ++     +++Y  Q       
Sbjct: 1171 ELVRISGLSHG-------TDVWLNNAQTLIREQIATLSEVICARDDIMLYLIQ------- 1216

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
              G   + A  +   + K    + + +     +   ++G+      +      K   Y F
Sbjct: 1217 -KGLDPARAFKIMEGIRKGKGVKPEDE-----AYMREHGVPDWYIES-----GKKIKYMF 1265

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ-------------- 807
             K+HAAAY +++ + AW K H P+ F A   T+  D+ +                     
Sbjct: 1266 PKAHAAAYVLMAVRIAWFKVHRPLAFYATYFTVRADDFDVAVMTAGREAILKKIDEIEAK 1325

Query: 808  -------------------DARQFNIQIMPPSVNTPCV-DFKVGDNR--IYYSLAAIKGV 845
                               +      + +P  +       F + +    +    AAI G+
Sbjct: 1326 GNAASAKEKSFLTVLEVALEMVARGYRFLPIDLYKSHATQFLIEEEARGLRPPFAAIPGI 1385

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            G T AR++ EA+    F SLED  SR    + +R V++ L+  G LD  
Sbjct: 1386 GETAARNLYEAAQQGEFLSLEDLQSRA---RASRAVIDVLMELGCLDGL 1431



 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 39/91 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S L+G +S   ++ + A     AIAITD     +  E  Q A   G++ ++
Sbjct: 340 VELHAHTTMSALDGVVSAAALVKRAAEWGHDAIAITDHGVCQAYPEAYQAAKKHGVRLVL 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           G +  +     L +  +   P       V+ 
Sbjct: 400 GVEAYVVDDGGLLVYRECDRPLDDETEYVVF 430


>gi|229104380|ref|ZP_04235049.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28]
 gi|228679078|gb|EEL33286.1| DNA polymerase III polC-type [Bacillus cereus Rock3-28]
          Length = 1433

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 150/923 (16%), Positives = 294/923 (31%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L +ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDQEDAMYRKILVSSQGGA-N 755

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                           +       F    +A E  V   ++ + ++    P+       + 
Sbjct: 756  PLNRHSLPPVHFRTTDEMLECFSFLGEDKAKEIVVTNTQKVASLIGDVHPVKDDLYTPKI 815

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +      ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 816  EG----ADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPTCNVSYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKILFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEDMKSNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATEFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 74.8 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSRLVAQAGKWGHAAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 421


>gi|304316867|ref|YP_003852012.1| DNA polymerase III subunit alpha [Thermoanaerobacterium
            thermosaccharolyticum DSM 571]
 gi|302778369|gb|ADL68928.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
            thermosaccharolyticum DSM 571]
          Length = 1410

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 152/908 (16%), Positives = 294/908 (32%), Gaps = 186/908 (20%)

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
             + N  + N+          +++LV   +G + L ELVS+  L +   ++ RI  S L +
Sbjct: 570  NEINSYLKNKVDIKKMPTYHVIILVKNQKGLRNLYELVSKSNL-EYFHRNPRIPKSLLTQ 628

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD----- 193
            +  EGL++ +    G + R    N      + ++ +        Y+ +Q     +     
Sbjct: 629  M-REGLLIGSACEQGEVFRGLISNFDDDKLQEIIRYYD------YLEIQPLGNNEFLIDK 681

Query: 194  ---------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                          ++ +L    + P+VAT +  FL   D     +LM   +       D
Sbjct: 682  GEVNSKEELIKINKRIYELGKRFKKPVVATCDVHFLDPWDDVYRKILM---YGKGFKDAD 738

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R +                + D   A E  ++   +   +++   PI         +   
Sbjct: 739  R-QPPLYFRTTEEMLSEFNYFDEKTAKEIVIDNPNKIVELIEDVKPIPDGTFPPSIEG-- 795

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               E ELR   +        +         +   +RLD ELN I    ++  ++I    +
Sbjct: 796  --AEEELRKLTLNKAHEIYGE------KLPEIVEKRLDKELNSIINNGYAVMYIIAQKLV 847

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------- 399
              +  +   VG  RGS   S  A    IT+++PL                          
Sbjct: 848  TKSLNDGYLVG-SRGSVGSSFVATMSGITEVNPLPPHYICPQCKYSEFALDGSYGSGVDM 906

Query: 400  ----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                              + FE FL  +    PD D++F  D +    +Y +  +G   V
Sbjct: 907  PDKNCPNCGTKMKKDGHDIPFEVFLGFEGDKEPDIDLNFSGDYQPIAHKYTEEIFGTGHV 966

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
             +  T G+L  K A   V +  +                         +  ++  +    
Sbjct: 967  FRAGTIGTLADKTAYGFVKKYFE---------------------EKNLLVHNAEIKRLV- 1004

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYR--DVRSDLPVTQFN 559
                            G  R    H  G+  V  DR + +  P+    D +    +T   
Sbjct: 1005 ------------MGCTGAKRTTGQHPGGVMVVPKDRDIYEFTPIQHPADAQDSDIITTHF 1052

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YH 610
                    L+K D LG    T+++   D       ++ L         T           
Sbjct: 1053 DYHSISGRLLKLDILGHDDPTVIRMLEDLTGVNAREIPLDDKETMSLFTSVDALNIKPED 1112

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +  T GTLG+ +  +  +RQ L   +P    +++ +  L          V+ N       
Sbjct: 1113 INCTVGTLGLPEFGTRFVRQMLVDTKPTTFAELVRISGLSH-----GTDVWLNNAQ---- 1163

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
                   I    K T   +I     + +  +  G     +  +  ++ K    + ++   
Sbjct: 1164 ------DIIKEGKATLKEVISTRDDIMLFLISKGMDKKLSFKIMESVRKGKGIKDEEI-- 1215

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                   K+ +      +  ++      Y F K+HA AY +++++ A+ K HYP  F A 
Sbjct: 1216 ---EEMKKHDVPDWFIQSCKKI-----KYMFPKAHAVAYVIMAFRIAYFKVHYPEAFYAT 1267

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPS------------------------------ 820
              T+  D          +  + NI+++                                 
Sbjct: 1268 YFTVRADEFNLDIMNSIEKIKENIRLIESKGNNATAKEKGLLTILEVGLEMYLRGLKFTD 1327

Query: 821  ---VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
                 +  + F +  + I   L +++G+G   A+ I E   +  F S+ED  +R    ++
Sbjct: 1328 VDLYKSDAIKFLITKDGILPPLNSLEGIGKQAAKIIAEERKNGKFLSIEDLRNRT---RI 1384

Query: 878  NRRVLESL 885
            ++ V++ L
Sbjct: 1385 SKTVIDIL 1392



 Score = 96.8 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 34/86 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH+  S ++G  S  +++ + +     AIAITD   L +  E    A   G++ I 
Sbjct: 314 VELHVHTQMSSMDGVSSAESLIKRASEWGHKAIAITDHAVLQAYPEAQSAAKKYGVKVIY 373

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       ++           
Sbjct: 374 GVEGYLVNDGVPIVSGNASGTIDDSF 399


>gi|163815213|ref|ZP_02206590.1| hypothetical protein COPEUT_01373 [Coprococcus eutactus ATCC 27759]
 gi|158449408|gb|EDP26403.1| hypothetical protein COPEUT_01373 [Coprococcus eutactus ATCC 27759]
          Length = 1623

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 147/919 (15%), Positives = 305/919 (33%), Gaps = 143/919 (15%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
             +D  + L  T+            ++L     G   L  L+S  +L     +  R+ +S 
Sbjct: 736  TMDDLNVLGSTSPDAIKKDKTYHGIILAKNEIGRVNLYRLISESHLT-YFARRPRMPMSL 794

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-- 193
            + +   EGLI+ +   +G + RA   ++     + ++     F    Y+ +Q     +  
Sbjct: 795  INKY-REGLILGSACEAGELFRAIVDDAPD---EEIVRLVNWFD---YLEIQPIGNNEFM 847

Query: 194  -------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                              ++V+L      P+VAT +  FL+ EDY    ++M        
Sbjct: 848  TRDTRNPKTMDDLIEYNKRIVELGEMFNKPVVATCDVHFLNPEDYIYRAIIM-----KSK 902

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               D     P ++      +           +   E+    + ++      +      + 
Sbjct: 903  GFDDADMQPPLYFRTTEEMLAEFQ---YLGSDKAREVVITNTNMIADMVERIEPVRPDKA 959

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              I +  +  L +                        ++RLD EL+ I    F+  ++I 
Sbjct: 960  PPIIENSDQTLTDICYTKAHQIYGP------ELPPQVQERLDRELHSIISNGFAVMYIIA 1013

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               +  +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 1014 QKLVWDSNDHGYLVG-SRGSVGSSFVATMAGITEVNPLSAHYICPKCHFVDFDSELVKSY 1072

Query: 400  ------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                      + FE FL  +    PD D++F  + + +   Y +
Sbjct: 1073 SGMSGCDMPDRDCPNCGTPLIKEGHDIPFETFLGFNGDKEPDIDLNFSGEYQSKAHAYTE 1132

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G  +  +  T G +  K A   V    +  +S+ + + +   +      + +   ++
Sbjct: 1133 VLFGKGKAFKAGTVGGVAEKTAFGYVYNYFK-DHSKEELMAEAKASGMDEKAAKKYAEEN 1191

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS-- 551
            +   + R     +      +    G+ R    H  G++       +    P+        
Sbjct: 1192 ATVTKRRCEMERL------ALGCTGVRRTTGQHPGGMIVLPRHEEIYSFTPIQHPANDVT 1245

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
               +T           L+K D LG    T++++  D           + I  DD +   L
Sbjct: 1246 SDIITSHFEYHSIDHNLLKLDILGHDDPTMIRRLEDLTGLDA-----TKIRLDDKDVMEL 1300

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
              +  +LGI   + +G+     G+     +  + ++   +P    ++V      +G +  
Sbjct: 1301 FHSTKSLGITPEDINGIPLGSLGVPEFGTDFAMQMLIDAKPTCFSDLVRIAGLAHGTDVW 1360

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEEMDKQKE 730
            +     +    K T    I     + +  +  G     A  +   + K I  +    + E
Sbjct: 1361 LGNAQELIKSGKCTISTAICCRDDIMVYLIHMGLDAGLAFNIMEKVRKGIVAKGKCDKWE 1420

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             + +  + +G+      +  ++      Y F K+HAAAY +++++ AW K +YP+E+  A
Sbjct: 1421 DWKAEMAAHGVPDWYVWSCQKI-----KYMFPKAHAAAYVMMAWRIAWFKVNYPLEYYTA 1475

Query: 791  SMTLEMDNVEKIKKFCQ----------------------------------DARQFNIQI 816
              ++  D+                                           +        
Sbjct: 1476 FFSIRADDFSYEMMCFGKERVLFHINEISKVDKNKRSAKDEGKLKDLKIVLEMYARGYDF 1535

Query: 817  MPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            +P  +     D F++ D +I  S A+I+G+G   A+ + EA+   PF S E+   R    
Sbjct: 1536 VPIDIYKAKADRFQIIDGKIMPSFASIEGMGEKAAQQLYEAAQKGPFLSKEEINERA--- 1592

Query: 876  KLNRRVLESLVFAGALDCF 894
            K+ +  +E +   G LD  
Sbjct: 1593 KIGKGTIEKMSELGILDGM 1611



 Score = 69.0 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 1/87 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-SQKACAAGIQPI 70
           V L +H+  S ++  + +  I+ + +    PAIAITD   + +       K      + I
Sbjct: 481 VELHMHTKMSEMDSVVDIETIVKRASDWGHPAIAITDHGVVQAFPIANHTKGLRKDFKII 540

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVP 97
            G +          + N       +  
Sbjct: 541 YGVEGYFVDDLKDLVKNSRNQSLDSEY 567


>gi|289550944|ref|YP_003471848.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
            HKU09-01]
 gi|315658446|ref|ZP_07911318.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590]
 gi|289180476|gb|ADC87721.1| DNA polymerase III alpha subunit [Staphylococcus lugdunensis
            HKU09-01]
 gi|315496775|gb|EFU85098.1| DNA polymerase III PolC [Staphylococcus lugdunensis M23590]
          Length = 1438

 Score =  223 bits (568), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 160/944 (16%), Positives = 315/944 (33%), Gaps = 187/944 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+              N K++N+          + L+V   EG + L ++
Sbjct: 579  IKMLQQMKELGV--------SNHKDINKKLSNEDAYKRARPSHVTLIVQNQEGLKNLFKI 630

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 631  VSAS-LVKYYYRTPRIPRSLLDEF-REGLLIGTACDEGELFTAVMQRDQSEVEKVANYYD 688

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          ++++      +P++AT N+ +L+E D  A 
Sbjct: 689  FIEVQPPALYQDLLDRELIRDTATLHEIYQRLLKAGEQANIPVIATGNAHYLNEHDGIAR 748

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +++   P+        +       F    +A E  V+     +  ++  
Sbjct: 749  KILIASQPGNPLNRSTLPK--AHFRTTDEMLDEFHFLGEEKAYEIVVKNTNALADRIERV 806

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI  +      +        E+R  + +  +    +         Q    RL+ EL  I
Sbjct: 807  VPIKDQLFTPRMEG----ANEEIRELSYSNAKKLYGEDL------PQIVIDRLEKELASI 856

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                F+  +LI    ++ + ++   VG  RGS   S  A    IT+++PL          
Sbjct: 857  IGNGFAVIYLISQRLVKKSLEDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPQCK 915

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL      +PD D++F  + +
Sbjct: 916  TSEFFNDGSVGSGFDLPDKKCETCGSELIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ 975

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 976  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYV-KGYLNDQGIHKRGAE---------- 1024

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+ R    H  GI  V     +    P+
Sbjct: 1025 -----------------------IDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPI 1061

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++   D          + +  
Sbjct: 1062 QYPADDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSG--IDPKTIPVDD 1118

Query: 603  FDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +  + +            +L   GT G+ +  +  +RQ LE  +P    +++ +  L  
Sbjct: 1119 KETMKIFSSPETLGVTEEDILCKTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSH 1178

Query: 652  PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
                          N +E + S    +  ++     +++Y         + +G   S A 
Sbjct: 1179 G-------TDVWLGNAQELVRSGICDLSGVIGCRDDIMVYL--------MYAGLEPSMAF 1223

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +  ++ K      +      I    +N +      +  ++      Y F K+HAAAY +
Sbjct: 1224 KIMESVRKGKGLTDE-----MIETMKENNVPDWYLDSCLKI-----KYMFPKAHAAAYVL 1273

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------- 804
            ++ + A+ K H+P+ + AA  T+   + + I                             
Sbjct: 1274 MAVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKESIKNTVKDMYARYMELGKKEKD 1333

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +       + P S+      DF +  + +     A+ G+G   A+ I+EA 
Sbjct: 1334 VLTVLELVNEMAHRGFSMQPISLEKSQAFDFIIEGDSLIPPFIAVPGLGENVAQRIVEAR 1393

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            ++ PF S ED   +     L++++++ L   G+L      + QL
Sbjct: 1394 SEGPFLSKEDLNKKA---GLSQKIIDYLDDLGSLPDL-PDKAQL 1433



 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 64/179 (35%), Gaps = 14/179 (7%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++N+ + + A     AIA+TD N + +  +    A   GI+ I 
Sbjct: 336 VEFHLHTAMSQMDGIPNINSYVAQAAEWGHKAIAVTDHNGVQAFPDAHSAAEKHGIKMIY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++       +      
Sbjct: 396 GMEGMLVDDGVPIAYKPTNRDLKDATYVVFDVET-TGLSNQYDQIIELA--AVKVYDGEI 452

Query: 131 ICL-SWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
           I             +E +I LT  +   +  A         ++ L  FK+  GD ++V 
Sbjct: 453 IDKFERFSNPHQKLSETIINLTHITDDMLTDA------PEIDEVLTEFKEWVGDAIFVA 505


>gi|312135559|ref|YP_004002897.1| DNA polymerase III subunit alpha [Caldicellulosiruptor owensensis OL]
 gi|311775610|gb|ADQ05097.1| DNA polymerase III, alpha subunit [Caldicellulosiruptor owensensis
            OL]
          Length = 1402

 Score =  223 bits (567), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 148/891 (16%), Positives = 287/891 (32%), Gaps = 187/891 (20%)

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
                +LV   +G + L +LVS  +L +   +  RI  S+L ++  +GL++ +   SG I 
Sbjct: 579  YHATILVKNQQGLKNLYKLVSYSHL-EYFYKRPRIPKSFLIQL-KDGLLIGSACESGEIF 636

Query: 157  RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVVQ 202
            RAF    S+   +++ TF        ++ +                     R    ++ Q
Sbjct: 637  RAFLEGKSEEEIEKIATFYD------FLEIMPVENNSFLIREGYLKDEESLREINKKIYQ 690

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
            L       +VAT+++ +          +        +   +    V  D  L  R+    
Sbjct: 691  LGKKLGKLVVATSDAHYCHPHQRVLRQI--------LKHNQGYNDVENDPQLYFRTTDEM 742

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
            +        +   E+    +  +      +    ++      +  E E+ N  +      
Sbjct: 743  LKEFEYLGPDACYEVVVENTNKIADMIEDVKPIPDETFPPKIEGAEEEIYNMTMKKAHEI 802

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                        +  R RL+ ELN I +  F+  +LI    +  +  +   VG  RGS  
Sbjct: 803  YGDPL------PEIVRARLEKELNSIIKNGFAVMYLIAQKLVSKSLSDGYLVG-SRGSVG 855

Query: 383  GSVTAYALTITDIDPLR-----------------------------------------FS 401
             S+ A    IT+++PL                                            
Sbjct: 856  SSLVATMCGITEVNPLPPHYVCPNCKYSEFITDGSAGCGYDLEDKNCPRCGKKLKKDGHD 915

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            + FE FL  D    PD D++F  D +    ++ +  +G   V +  T  ++  K A   V
Sbjct: 916  IPFETFLGFDGDKEPDIDLNFSGDYQPIAHKFTEELFGQGYVFRAGTISTVAEKTAHGFV 975

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
             +     Y++   L                                   +L +SQ   G+
Sbjct: 976  TK-----YAEEKGLSLHPAE-----------------------------ILRLSQGCTGV 1001

Query: 522  YRHASTHAAGIVIGDRP--LSQLVPMYR--DVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
             R    H  G++I  R   +    P+    D      +T           L+K D LG  
Sbjct: 1002 KRTTGQHPGGLMIVPRDKEIFDFTPIQHPADSEDKSVITTHFDYHAISGRLLKLDILGHD 1061

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQLESSGM 628
              T+++   D        + L         T           +    GT GI +  +  +
Sbjct: 1062 DPTVIRMLQDLTGVDPRSIPLDDKDTMSIFTSTEALGISPEDIDCEVGTFGIPEFGTRFV 1121

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            RQ L   +P    +++ +  L   G         +       + +    +  ++     +
Sbjct: 1122 RQMLIETKPKTFAELVRISGLSH-GTNVWTNNAQDL------VRNGIATLKEVISTRDDI 1174

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++Y  Q         G    ++  +   + K    + + ++                  +
Sbjct: 1175 MLYLIQ--------KGVPPKDSFRIMEDVRKGKGLKPEDEQLLRAHN----------VPD 1216

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK------- 801
             +    K   Y F K+HAAAY +++++ A+ K H+   F A   T+  D+ +        
Sbjct: 1217 WYIESCKKITYMFPKAHAAAYVMMAFRIAYFKVHFKEAFYATYFTVRADDFDYATILNGR 1276

Query: 802  --------------------------IKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNR 834
                                      + +   +     ++  P  +N    + F + D  
Sbjct: 1277 DAIRQKIRDLENRISSLSQKDKNLLTVLEIANEMLARGLKFYPVDLNESDAERFIIKDGG 1336

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            +     A+  VG   A+ I+EA  +  F S++D   R    KLN++V+E L
Sbjct: 1337 LLIPFNALPNVGVAAAKSIVEARKEGRFLSVDDLQRRA---KLNKQVIEIL 1384



 Score = 89.5 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++   S   I+   A+    A+AITD   + +  E  + + +  I+ I 
Sbjct: 304 VELHAHTKMSTMDAVCSAEEIIKLAASLGHKAVAITDHGVVQAFPEAQEASKSYNIKVIY 363

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G +  +       + N  +        +V+
Sbjct: 364 GMECYLIDDGAPVVYNPKEGQGFDSTFVVV 393


>gi|326791606|ref|YP_004309427.1| DNA polymerase III subunit alpha [Clostridium lentocellum DSM 5427]
 gi|326542370|gb|ADZ84229.1| DNA polymerase III, alpha subunit [Clostridium lentocellum DSM 5427]
          Length = 1468

 Score =  223 bits (567), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 158/922 (17%), Positives = 293/922 (31%), Gaps = 181/922 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            + F +     G+         +D  +++   +            V+LV    G   L  L
Sbjct: 598  VRFIEMLQEKGVT-------TLDAINDMVEISPDYIKKLPTYHGVILVKNEIGRINLNRL 650

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  +L D   +  R+  S +Q+   EGLI+ +   +G I +A      +    RL++F 
Sbjct: 651  VSASHL-DYFNRRPRMPKSLIQK-HREGLIIGSACEAGEIFQAILREKEETELARLVSFY 708

Query: 176  KLFGDRLYVNLQRHRGYD----------------RYRESQVVQLAYTHELPLVATNNSLF 219
                   Y+ +Q                      R    +VV+L   +  P+VAT +  F
Sbjct: 709  D------YLEIQPIGNNSFMLRSDKYTAETEEDLRQYNKRVVELGEHYNKPVVATCDVHF 762

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            L  ED     ++MA             +   D           +  +         +   
Sbjct: 763  LDPEDEIYRRIIMA---------GKGFKDADDQPPVYLRTTEEMLEEFKYLGSEKAKEVV 813

Query: 280  RCSFILQVHAPILPRFIEKE-CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
              +  L          +    C     + +  L                           
Sbjct: 814  ITNTQLINEQIEKISPVLPYKCPPEIPDSDATLTQICYDKAHEIYGP------ELHPVVV 867

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RL+ ELN I    F+  ++I    +  +  +   VG  RGS   S  A    IT+++PL
Sbjct: 868  ERLERELNSIISNGFAVMYIIAQKLVWDSNDHGYLVG-SRGSVGSSFAATMSGITEVNPL 926

Query: 399  R---------------------------------------------FSLLFERFLNPDRM 413
                                                            + FE FL     
Sbjct: 927  APHYICPQCHYVDFESEEVRAYAGRSGCDMPDATCPKCGHELLKEGHDIPFETFLGFKGD 986

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
              PD D++F  D + +  +YV+  +G  +  +  T G+L  K A   V +  +       
Sbjct: 987  KEPDIDLNFSGDYQAKAHKYVEVIFGEGKAFRAGTIGTLAEKTAFAYVYKYYE------- 1039

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
                                        R        +  I++   G+ R    H  GI+
Sbjct: 1040 ---------------------------ERDIHKRRAEMKRIAEGCTGVKRTTGQHPGGII 1072

Query: 534  --IGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
                DR + +   +       +   +T           L+K D LG    T++++  D  
Sbjct: 1073 VVPHDRDIYEFTAVQHPANDVMTPIITTHFEYHSIDHNLLKLDILGHDDPTMIRRLEDLT 1132

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                  +D   I  DD +   L  +   LGI   +  G++    G+     + +I ++  
Sbjct: 1133 -----GIDAKTIKLDDKDVMSLFHSTTALGIKPEDIGGIKLGSLGIPEFGTDFVIQMLLD 1187

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
             +P    ++V  +   +G +  +     +    + T   +I     +    +  G     
Sbjct: 1188 AKPQSFSDLVRISGLSHGTDVWLGNAQTLIEEGRGTISTVICTRDDIMTYLINQGMDKGL 1247

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            +  +  ++ K    + +     +     +NG+      +  ++      Y F K+HAAAY
Sbjct: 1248 SFTIMESVRKGKGLKPE-----WEEAMLENGVPDWYIWSCKKI-----KYMFPKAHAAAY 1297

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEK---------------------------- 801
             +++++ AW K  YP+ +  A  ++                                   
Sbjct: 1298 VMMAWRIAWYKIFYPLAYYTAFFSIRASAFSYETMCLGKERLEYHMKELMLKGKENQSAK 1357

Query: 802  ------IKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIM 854
                    +  Q+     I+ MP  +       F++ D +I  SL++I G+G   A  ++
Sbjct: 1358 EQDTLKDMRIVQEMYARGIEFMPIDITRADDKRFQIIDGKIMPSLSSIDGLGEKAAEAVV 1417

Query: 855  EASADKPFDSLEDFCSRVDSKK 876
            EA  D PF S EDF +R    K
Sbjct: 1418 EAVKDGPFLSKEDFRNRAKVSK 1439



 Score = 74.8 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA--CAAGIQP 69
           V L +H+  S ++  + ++ ++D+  A   PAIAITD   L  A   +          + 
Sbjct: 356 VELHLHTMMSDMDSVVDIHQMIDRAKAWGMPAIAITDHGCLQ-AFPIANHCVSKDEPFKV 414

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           I G +          +TN          
Sbjct: 415 IYGVEAYFVDDLKEVVTNSKNQSLMESY 442


>gi|229117304|ref|ZP_04246682.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3]
 gi|228666204|gb|EEL21668.1| DNA polymerase III polC-type [Bacillus cereus Rock1-3]
          Length = 1435

 Score =  223 bits (567), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 150/923 (16%), Positives = 294/923 (31%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 588  FEYHNQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 646

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 647  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 698

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L +ED     +L++       
Sbjct: 699  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDQEDAMYRKILVSSQGGA-N 757

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                           +       F    +A E  V   ++ + ++    P+       + 
Sbjct: 758  PLNRHSLPPVHFRTTDEMLECFSFLGEDKAKEIVVTNTQKVASLIGDVHPVKDDLYTPKI 817

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +      ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 818  EG----ADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 867

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 868  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 926

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 927  GFDLPDKECPTCNVSYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKILFG 986

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 987  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1023

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1024 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQYPADSIGAEWR 1072

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1073 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1131

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1132 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1184

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1185 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1236

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1237 E-----WEEDMKSNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1286

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1287 LFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1346

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1347 GYSFQKVDLYRSHATEFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR 1406

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1407 ---SKVSKTIIEYLDSQGCLGDL 1426



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 334 VELHLHTPMSQMDAVTPVSRLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 394 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 423


>gi|328462500|gb|EGF34509.1| DNA polymerase III DnaE [Lactobacillus rhamnosus MTCC 5462]
          Length = 331

 Score =  223 bits (567), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 112/320 (35%), Positives = 173/320 (54%), Gaps = 11/320 (3%)

Query: 655 IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
           ++NI  +  RKNG+E I    P +  +LK T GV++YQEQVMQ+A ++ G+SL EAD+LR
Sbjct: 1   MENIDTFIARKNGQEPIAYPDPALAKILKPTYGVLVYQEQVMQVANVMGGFSLGEADLLR 60

Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           RAM KK    +  ++++FI GA K G  +  A  ++  + +FA+YGFN+SHA AY+ +++
Sbjct: 61  RAMSKKKSSVLAAEQDKFIEGALKQGFPEATAKTVYAYIDRFANYGFNRSHAVAYSKVAF 120

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             A++K HYP  F AA M   M+N+ K++ + Q+A+   + ++ P +N     FK+   +
Sbjct: 121 WLAYLKVHYPAAFFAALMNASMNNLPKLRTYVQEAKARKVGLLGPDINQSNGGFKLSQGK 180

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
           I + L +IKG+       I  A  + PF  L D   R+D K L     ++   AGA D F
Sbjct: 181 IRFGLLSIKGMRRDFVEAIFAARKNGPFKDLRDLLQRLDPKWLKTDYYKAPTLAGAFDQF 240

Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN 954
             +R Q L +LD +    +            +F+             +     +S R E 
Sbjct: 241 SNNRAQTLANLDELINSVKL-----AGNDVGLFSML------APKTIEVPEMPASERLEA 289

Query: 955 EQRVLGFYFSGHPLDVYKPI 974
           E  VLG Y SGHP+D Y P+
Sbjct: 290 EAEVLGVYLSGHPVDKYAPL 309


>gi|238060269|ref|ZP_04604978.1| error-prone DNA polymerase [Micromonospora sp. ATCC 39149]
 gi|237882080|gb|EEP70908.1| error-prone DNA polymerase [Micromonospora sp. ATCC 39149]
          Length = 535

 Score =  223 bits (567), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 177/525 (33%), Positives = 278/525 (52%), Gaps = 26/525 (4%)

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                 E + LR   +AG   R          H + YRQ LD EL +I  + F GYFL+V
Sbjct: 1   MPAGHTEMSWLRALTMAGARERYG----PPEAHPEAYRQ-LDHELRMIDELGFPGYFLVV 55

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDI 420
            D + + ++ +I    GRGS A S   YAL IT++D +R  LLFERFL P+R   PD D+
Sbjct: 56  YDIVAFCRRADIY-CQGRGSAANSAVCYALRITNVDAVRHRLLFERFLAPERDGPPDIDV 114

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           D   DRR+EVI++V  +YG E  AQ+    S + ++A+RDV +A      Q D   + I 
Sbjct: 115 DIESDRREEVIQHVYARYGREHAAQVANVVSYRPRSAVRDVAKAFGFSPGQQDAWSRQID 174

Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
              +  V+     D               +++  + +L+   RH   H+ G+VI DRP+ 
Sbjct: 175 RWGS--VASVDAEDIPE------------QVVAYADQLQTFPRHLGIHSGGMVICDRPVI 220

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
           ++ P+         V Q++       GL+KFD LGL  L+ L    D +   G  +DL  
Sbjct: 221 EVCPVEWGRMPGRSVLQWDKDDCAAVGLVKFDLLGLGMLSALHYGYDMI---GTTLDLGD 277

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID--NI 658
           +  DD E Y +L    ++G+FQ+ES      L  ++P    D++  V+L RPGPI   ++
Sbjct: 278 MTLDDPEVYDMLCRADSVGVFQVESRAQMATLPRLKPREFYDLVVEVALIRPGPIQGGSV 337

Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM- 717
             Y  R+NG+E +   HPL+   L++T GV ++QEQ+MQ+A  L+G+  + AD LRRAM 
Sbjct: 338 HPYIRRRNGQEPVTYPHPLMRNALEKTLGVPLFQEQLMQLAIDLAGFDAAGADQLRRAMG 397

Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
            K+  + M +  +R  +G ++ GI+  +A +++  L  FA YGF +SHA ++A + Y ++
Sbjct: 398 AKRSVQRMARVADRLYAGMAERGITGELADDVYRKLTAFASYGFPESHAMSFAYLVYASS 457

Query: 778 WMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           W+K ++P  FLAA +  +       +    DAR+  +++  P VN
Sbjct: 458 WLKRYHPGPFLAALLGAQPMGFYSPQTLVDDARRHGVEVRRPDVN 502


>gi|228940906|ref|ZP_04103465.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar berliner
            ATCC 10792]
 gi|228973835|ref|ZP_04134411.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            thuringiensis str. T01001]
 gi|228980424|ref|ZP_04140734.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
 gi|228779244|gb|EEM27501.1| DNA polymerase III polC-type [Bacillus thuringiensis Bt407]
 gi|228785860|gb|EEM33863.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar
            thuringiensis str. T01001]
 gi|228818742|gb|EEM64808.1| DNA polymerase III polC-type [Bacillus thuringiensis serovar berliner
            ATCC 10792]
 gi|326941584|gb|AEA17480.1| DNA polymerase III PolC [Bacillus thuringiensis serovar chinensis
            CT-43]
          Length = 1433

 Score =  223 bits (567), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 150/923 (16%), Positives = 293/923 (31%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGGA-N 755

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                           +       F    +A E  V   ++ + ++    P+       + 
Sbjct: 756  PLNRHSLPPVHFRTTDEMLECFSFLGEDKAKEVVVTNTQKVASLIGDVRPVKDDLYTPKI 815

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +      ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 816  EG----ADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKDCPTCNVAYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPETLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEDDMKGNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATEFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSRLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 421


>gi|325524831|gb|EGD02789.1| error-prone DNA polymerase [Burkholderia sp. TJI49]
          Length = 462

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 158/463 (34%), Positives = 242/463 (52%), Gaps = 14/463 (3%)

Query: 334 AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
            +   +++  EL +IA++ +  +FL V D +++A+  NI    GRGS A SV  Y L IT
Sbjct: 2   PEKVAKQIRHELALIAKLNYEPFFLTVYDIVKFARSQNIL-CQGRGSAANSVVCYCLGIT 60

Query: 394 DIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
           ++DP + + LFERF++ +R   PD D+DF   RR+EVI+++  KYG +R A      + +
Sbjct: 61  EVDPDQSTTLFERFISEERGEPPDIDVDFEHQRREEVIQHIYKKYGKDRAALAAAVSTYR 120

Query: 454 AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
            +  LR+VG+AL +    VDR+ K           LQ  A          A P +    +
Sbjct: 121 PRGVLREVGKALGVDPMLVDRVAKGHRWFDGSRDLLQKFAAV----GLDPATPLIHAWAD 176

Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
           ++ +L    RH S H+ G VI    L++LVP+         V Q++   +E   L+K D 
Sbjct: 177 LAARLLNFPRHLSQHSGGFVISRGKLTRLVPVENAAMDGRRVIQWDKDDLESLKLMKVDV 236

Query: 574 LGLKTLTLLQKSLDFLAQRG------VKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
           L L  L+ L ++ D                L  IP +D  TY ++    T+G+FQ+ES  
Sbjct: 237 LALGMLSALHRAFDMRTAWRGPAADGKPFTLKHIPQEDKATYDMICRADTVGVFQIESRA 296

Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPID--NIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
               L  +QP    D++  V++ RPGPI    +  Y  R+ G EKI      + P L+ T
Sbjct: 297 QMSMLPRLQPRTYYDLVIEVAIVRPGPIQGGAVHPYLRRRQGLEKISYPKDDLKPALERT 356

Query: 686 QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKT 744
           +GV I+QEQVMQIA + +G++  EAD LRRAM     K  ++K   + + G  + G    
Sbjct: 357 KGVPIFQEQVMQIAMIAAGFTAGEADELRRAMAAWKRKGNLEKYHAKIVDGMRERGYPPD 416

Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            A  IFE +  F DYGF +SHAA++A ++Y ++W+K H P  F
Sbjct: 417 FAEQIFEQIKGFGDYGFPESHAASFAKLAYASSWLKCHDPAIF 459


>gi|302389800|ref|YP_003825621.1| DNA polymerase III catalytic subunit, PolC type [Thermosediminibacter
            oceani DSM 16646]
 gi|302200428|gb|ADL07998.1| DNA polymerase III catalytic subunit, PolC type [Thermosediminibacter
            oceani DSM 16646]
          Length = 1415

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 150/928 (16%), Positives = 301/928 (32%), Gaps = 202/928 (21%)

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            ID    +   N+  T +      ++LV  ++G + L +LVS  +L +   +  RI  S L
Sbjct: 571  IDDLSMINQVNKKATQYLNSYHAIILVKNSQGLRDLYKLVSISHL-EYFYRHPRIPKSLL 629

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-------- 188
            ++   EGLI+ +G  +G + ++  ++ S    +R++ F        ++ +Q         
Sbjct: 630  KKY-REGLIVGSGCEAGELFQSLIYHHSDKDIERIVFFYD------FLEIQPLQNNKFLI 682

Query: 189  ------HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
                  +    +    ++ QL   +  P+V T +  FL+ ED E +  ++          
Sbjct: 683  EKGILSNEEKLKEINKRIYQLGKKYNKPVVITGDVHFLNPED-ETYRKILLTVQG----- 736

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE--C 300
                R               +  +     E   +     +                +   
Sbjct: 737  ---YRDNNLDSGLYLKTTEEMLDECRYLGEEAAKEVVIENPNRIADEIEDGIKPVPDELY 793

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  + E+ N      +    +         +  ++R++ ELN I    +S  +LI 
Sbjct: 794  PPKIEGADEEIINMTYNRAKEIYGE------ELPEIVKKRIERELNSIVNNGYSVIYLIA 847

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S+ A    IT+++PL                      
Sbjct: 848  HKLVKKSLDDGYLVG-SRGSVGSSLVATMCGITEVNPLPPHYLCPKCKNSIFPDNVEGIV 906

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                +++ FE F+  +   +PD D++F  + +    +Y +  +G
Sbjct: 907  GPDLPDKICPVCGCPMKKDGYNIPFEVFMGFEGDKVPDIDLNFSGEYQPIAHKYTEELFG 966

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
               V +  T  ++  K A   V               +    +     S   I       
Sbjct: 967  KNNVFRAGTISTIAEKTAYGFV---------------RAYLEEKRITASEYEIKR----- 1006

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAG--IVIGDRPLSQLVPMYRDVRS---DLP 554
                          ++  + G+ R    H  G  +V  D+ + +  P+          + 
Sbjct: 1007 --------------LAAGITGVKRTTGQHPGGLMVVPKDKEIFEFTPIQYPADDKESGVI 1052

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT 614
             T F+   I +        L L  L     ++  + +    +D   IP DD  T  + ++
Sbjct: 1053 TTHFDYHSISE------RLLKLDLLGHDDPTVIKMLEEETGIDAKKIPLDDRATMAIFSS 1106

Query: 615  KGTLG--------------IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
               LG              + +  +  +RQ LE  +P    +++ +  L          V
Sbjct: 1107 LEPLGLKPEDVGTTVGTLGVPEFGTRFVRQMLEETRPTTFSELVRISGLSH-----GTDV 1161

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            + N              +      T   +I     + I  +  G     A  +   + K 
Sbjct: 1162 WLNNAQ----------DLIKNKMATLKEVIATRDDIMIHLIEKGIDHKTAFTIMEKVRKG 1211

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
               + ++++           + +      F    K   Y F K+HA AY +++++ A+ K
Sbjct: 1212 KGLKPEEEQI----------LKENGVEQWFIDSCKKIKYMFPKAHAVAYVIMAFRIAYFK 1261

Query: 781  THYPVEFLAASMTLEMDNVE---------------------------------KIKKFCQ 807
             HYP  F A   T+  D+ +                                  I +   
Sbjct: 1262 VHYPEAFYATYFTVRADDFDAKLILQGPKKIKEVIEEINKKEKNATPKEKNLLTILEVAN 1321

Query: 808  DARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            +     IQ +P  +       F +    I   L A+ G+G + A+ I        F S+E
Sbjct: 1322 EMYMRGIQFIPIDLYKSHYSKFIITKEGILPPLNALPGLGLSAAQSIYNERQKGEFASIE 1381

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCF 894
            D   R    ++ + V+E L  +G L+  
Sbjct: 1382 DLRMRT---RVTKNVVEILRQSGVLNGL 1406



 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+ YS L+   S   +++        A+A TD   + S  E  + A A GI+ I 
Sbjct: 318 VELHLHTRYSALDAVCSPKEVIELCKHWGHKAVAFTDHGVVQSFPEVYEAAKATGIKAIY 377

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           G +  I   +   +    +        +V
Sbjct: 378 GLEAYIFDDEFPVIAEPPEGNIDDFVYVV 406


>gi|218678990|ref|ZP_03526887.1| DNA polymerase III, alpha subunit [Rhizobium etli CIAT 894]
          Length = 443

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 124/429 (28%), Positives = 202/429 (47%), Gaps = 25/429 (5%)

Query: 515 SQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFL 574
           +++L G  RH S H  G V+    L +LVP+     +D  V +++   I+    +K D L
Sbjct: 28  ARQLMGAPRHLSQHPGGFVLTHDRLDELVPIEPAAMADRQVIEWDKDDIDTLRFMKVDVL 87

Query: 575 GLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            L  L+ +++ LD LA       DL+ IP +D  TY ++    TLG FQ+ES      L 
Sbjct: 88  ALGMLSCMKRGLDMLADHKGINLDLATIPAEDPRTYAMIRRADTLGTFQIESRAQMSMLP 147

Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            ++P    D++  V++ RPGPI   +V+    R+ G E +V   P ++ +L +T GV ++
Sbjct: 148 RLKPRTFYDLVVQVAIVRPGPIQGDMVHPYLRRREGLEPVVFPKPELEKVLGKTLGVPLF 207

Query: 692 QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE-MDKQKERFISGASKNGISKTIAVNIF 750
           QEQ M++A   +G++  EAD+LR++M        +   KE+ I G   NG  +  A   F
Sbjct: 208 QEQAMRVAIECAGFTPGEADMLRKSMATFKFTGGVSSFKEKLIKGMVDNGYQRDFAEATF 267

Query: 751 ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR 810
           + L  F  YGF +SHAA++A+I+Y +AW+K  +P  F AA +  +        +  +DA 
Sbjct: 268 KQLEGFGSYGFPESHAASFALIAYASAWLKCWHPDVFCAALLNAQPMGFYAPAQIVRDAL 327

Query: 811 QFNIQIMPPSVNTPCVDFKVGDN------RIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
           +  I I P   N    D  +          +   L  +KG+       I+ A AD+PF S
Sbjct: 328 EHGIDIRPVCANASRWDCTLEPTDDDSRFAVRLGLRMVKGLANAHGATIVGARADQPFAS 387

Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALD-CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
           ++D   R     +    L  L  A A     G +R + L ++  ++              
Sbjct: 388 IDDLWRRA---GVPSAALVQLAEADAFRPALGLARREALWAIKALRDE-----------P 433

Query: 924 ENIFAHEKG 932
             +FA    
Sbjct: 434 LPLFAAASA 442


>gi|229031448|ref|ZP_04187448.1| DNA polymerase III polC-type [Bacillus cereus AH1271]
 gi|228729737|gb|EEL80717.1| DNA polymerase III polC-type [Bacillus cereus AH1271]
          Length = 1433

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 152/923 (16%), Positives = 294/923 (31%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDGMYRKILVSSQGGA-- 754

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                     P  + +   EM+  FS L E +   + +         +      +      
Sbjct: 755  -NPLNRHSLPPVHFRTTDEMLECFSFLGEDVAKEIVVTNTQKVASLIGDVHPVKDDL--Y 811

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 812  TPKIEGADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPACNVPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVSGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPKSLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEDMKSNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATEFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSRLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 421


>gi|219667072|ref|YP_002457507.1| DNA polymerase III subunit alpha [Desulfitobacterium hafniense DCB-2]
 gi|219537332|gb|ACL19071.1| DNA polymerase III, alpha subunit [Desulfitobacterium hafniense
            DCB-2]
          Length = 1447

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 166/926 (17%), Positives = 305/926 (32%), Gaps = 197/926 (21%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            DID++   +   + +         ++L     G + L +LVS  +L D   +  RI  S 
Sbjct: 596  DIDLKAADEAARKDEYKKLKTYHAIILAKDYTGLKNLYKLVSYSHL-DYFYKKPRILKS- 653

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR- 194
            L +  +EGLI+ +  S G + +A     S+   + +           Y+ +Q     D  
Sbjct: 654  LYKKYSEGLILGSACSEGELYQAILLGRSEEEIESIAEEYD------YLEIQPLGNNDYL 707

Query: 195  -------------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
                             ++V L      P+VAT +  FL  ED E +  ++        +
Sbjct: 708  IRTEQVPGKDYLMEINRKIVALGEKLNKPVVATGDVHFLDPED-EIYRRILEAGQGFKDA 766

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             +  P                      +A E  V      + + +  +PI         +
Sbjct: 767  DQQPPLYLKTTEEMLEEFSYLGE---DKAYEVVVTNTNLIADLCEPISPISSEKATPHIE 823

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              ++  +     KA            +         +QRLD EL+ I +  FS  ++I  
Sbjct: 824  GCEETIKEIAFGKAHE----------LYGNPLPDIVQQRLDRELDSIIKNGFSVMYIIAQ 873

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------- 399
              +  + ++   VG  RGS   SV AY   IT+++ L                       
Sbjct: 874  KLVWKSNEDGYLVG-SRGSVGSSVAAYMTGITEVNALPPHYRCPSCKYSDFSDHGPKIGF 932

Query: 400  ------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
                                + FE FL  +    PD D++F  + + +  +Y +  +G  
Sbjct: 933  DLPDRECPVCGTQLDKDGIDIPFETFLGFNGDKEPDIDLNFSGEYQAKAHKYTEVIFGKG 992

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
               +  T G++  K A   V +     + + +R                           
Sbjct: 993  TTFKAGTIGTIADKTAFGYVRKY----FEEKNRTANKAE--------------------- 1027

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYR---DVRSDLPVT 556
                     ++ IS+   G+ R +  H  GI++    R + +  P+     D  SD+  T
Sbjct: 1028 ---------IIRISKGCTGIKRTSGQHPGGIIVVPKGREIFEFCPVQHPADDPNSDIITT 1078

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             F+   I+       + L L  L     ++  + Q    VD   IP DD +T  L ++  
Sbjct: 1079 HFDYHSID------QNLLKLDILGHDDPTVIRMLQDITGVDPKTIPMDDKKTMSLFSSTE 1132

Query: 617  --------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
                          T GI +  +  +R  L    P   ED+I +  L          V+ 
Sbjct: 1133 ALGVTPEQINSKVGTFGIPEFGTRFVRGMLLDTLPKAFEDLICISGLSH-----GTDVWL 1187

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
                           +      T    +     +    +  G   + A  +   + K  K
Sbjct: 1188 GNA----------KDLIDAGTVTLSEAVCTRDEIMTYLIRKGLPPNTAFKIMEIVRKG-K 1236

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
               + +   + +   ++ + +    +  ++      Y F K+HAAAY +++++ AW K H
Sbjct: 1237 ALKEPKWPEYETLMREHDVPEWYIDSCRKI-----KYMFPKAHAAAYVMMAFRIAWFKVH 1291

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQ---------------------------------DA 809
             P+ + AA  T+     +                                        + 
Sbjct: 1292 IPLAYYAAYFTIRAKAFDAEFMIFGKEKVKAKMKEIEALGNQAAPKDKDMYDDLEIVLEM 1351

Query: 810  RQFNIQIMPPSVN-TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
             +     +P  +  +    F+V  N +   L +I G+GT  A  +  A+ +KPF+SLED 
Sbjct: 1352 YERGFSFLPIDIYASHATKFQVEGNALRPPLNSISGMGTIAAEGLYNAAQEKPFNSLEDV 1411

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCF 894
              R    K+    +E L      DC 
Sbjct: 1412 KKR---GKIGNSTMELLSK---FDCL 1431



 Score = 82.9 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 3/102 (2%)

Query: 1   LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           + Q L K+   V L +H+  S ++      +++ +       AIAITD   + S  E  +
Sbjct: 327 IRQDLAKAKR-VELHLHTQMSQMDAMSGATDLIKRAMNWGMKAIAITDHGVVQSFPEAHK 385

Query: 61  KA-CAA-GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
                   ++ I G +  +       +T+       T   ++
Sbjct: 386 LLGRDNPNMKVIYGVEAYLAPDKKPSVTHPKGQSIDTTYCVL 427


>gi|229013001|ref|ZP_04170166.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048]
 gi|228748255|gb|EEL98115.1| DNA polymerase III polC-type [Bacillus mycoides DSM 2048]
          Length = 1435

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 152/923 (16%), Positives = 293/923 (31%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 588  FEYHDQLNDSMGQGDAYKRGRPSHLTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 646

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 647  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 698

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 699  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAIYRKILVSSQGGA-N 757

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                           N       F    +A E  V    + + ++    P+       + 
Sbjct: 758  PLNRHSLPPVHFRTTNEMLDCFSFLGEDKAKEIVVTNTHKIASLIGDVRPVKDDLYTPKI 817

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +      ++E R+ +           +I      +    RL+ EL  I    F+  +LI 
Sbjct: 818  EG----ADDETRDMSYIMAR------SIYGDELPEIVEARLEKELKSIIGHGFAVIYLIS 867

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 868  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 926

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 927  GFDLPDKECPTCNVPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKLLFG 986

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 987  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1023

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1024 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGAEWR 1072

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1073 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1131

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1132 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1184

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1185 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1236

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1237 E-----WEEEMRNNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1286

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1287 LFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1346

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1347 GYSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAAFSIVEARKNGDFLSKEDLQQR 1406

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1407 ---SKVSKTIIEYLDGQGCLGDL 1426



 Score = 74.8 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S++ ++ +       AIA+TD     S  E       AG++ + 
Sbjct: 334 VELHLHTPMSQMDAVTSVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVLY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 394 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 423


>gi|225568406|ref|ZP_03777431.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM 15053]
 gi|225162634|gb|EEG75253.1| hypothetical protein CLOHYLEM_04483 [Clostridium hylemonae DSM 15053]
          Length = 1487

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 148/923 (16%), Positives = 291/923 (31%), Gaps = 131/923 (14%)

Query: 53   FSA-----LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
              A     + F       GI         +   +    +N           +++L     
Sbjct: 596  AGATAEIFVRFVDMLKERGIH-------TLARLNQFGSSNANAIRKLPSFHVIILAKNET 648

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            G   L +L+S+ +L D   +  RI  S L     EGLI+ +   +G + +A   + SQ  
Sbjct: 649  GRVNLYKLISKSHL-DYFGRQPRIPKSELSR-HREGLIVGSACEAGELYQAILDDKSQER 706

Query: 168  EKRLLTFKKLFGDRLYVNLQR----------------HRGYD-RYRESQVVQLAYTHELP 210
              R++ F        Y+ +Q                 H   D +     +V+L      P
Sbjct: 707  IARIVNFYD------YLEIQPLGNNKFMIASERISKIHSEEDLKNVNRTIVKLGEKFRKP 760

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
            +VAT +  F+  ED E +  ++        + +  P                  +     
Sbjct: 761  VVATCDVHFMDPED-EVYRRIIMAGKGFTDADEQAPLYLRTTDEMLAEFEYLGSA----- 814

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
                 E+       +      +      +C  +  + +  LR+                 
Sbjct: 815  --KAREVVIDNPNKIADSVERISPVRPDKCPPVIPDSDQMLRDICYNKARSMYGD----- 867

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                +   +RL+ ELN I    F+  ++I    +  + ++   VG  RGS   S  A   
Sbjct: 868  -ELPEVVTERLERELNSIISNGFAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFVATMA 925

Query: 391  TITDIDPLRFSLLFERFLNPDRMSMPDFDID---FCQDRRDEVIRYVQNKYGHERVAQI- 446
             IT+++PL     + R  +       D          D  D+V      K   +      
Sbjct: 926  GITEVNPLS-PHYYCRSCHYSDFDSGDVRAYAGGCGWDMPDKVCPVCGEKLVKDGFDIPF 984

Query: 447  -----------ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
                              +     +  +  ++ +              A   +   + + 
Sbjct: 985  ETFLGFKGNKEPDIDLNFSGDYQSNAHKYTEVIFGDGQTFRAGTIGTLADKTAFGYVKNY 1044

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRSDL 553
               R  R  +     +  I Q   G+ R    H  GI++      ++   P+        
Sbjct: 1045 FEERGQRKRN---CEIDRIVQGCTGIRRSTGQHPGGIIVLPLGEDINSFTPVQHPANDMT 1101

Query: 554  P--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQK---------SLDFLAQRGVKVDLSLIP 602
               VT           L+K D LG    T+++            +   +   + D + IP
Sbjct: 1102 TDIVTTHFDYHSIDHNLLKLDILGHDDPTMIKTLEEFISSPAMENEYNETDNRFDATKIP 1161

Query: 603  FDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
             DD     L      LGI   +  G      G+     E ++ +V   +P  + +++  +
Sbjct: 1162 LDDRGVMSLFHDTSALGIKPDDIGGCPVGCLGIPEFGTEFVVQMVVDTKPQTLSDLIRIS 1221

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
               +G +  ++    +    K T    I     +    +  G     +  +   + K   
Sbjct: 1222 GLSHGTDVWLNNAQELIRSGKATISTAICTRDDIMTYLINKGMDSELSFTIMEKVRKGKG 1281

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
               + +K           + +    + +    K   Y F K+HAAAY +++Y+ A+ K +
Sbjct: 1282 LTPEFEKA----------MKEADVPDWYIWSCKQIKYMFPKAHAAAYVMMAYRIAYCKIN 1331

Query: 783  YPVEFLAASM---------------------------------TLEMDNVEKIKKFCQDA 809
            YP+ +  A                                   + +  +  K  +  Q+ 
Sbjct: 1332 YPLAYYGAYFGIRADAFSYELMCQGKEKLKFYIEDYKRRSDSLSKKEQDTMKDMRIVQEM 1391

Query: 810  RQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
                 + MP  +       F++ D R+   L++I G+G   A  + EA+ D P+ S +DF
Sbjct: 1392 YARGYEFMPLDIYKAKASKFQIVDGRLMPPLSSIDGMGDKAAEAVEEAAKDGPYLSRDDF 1451

Query: 869  CSRVDSKKLNRRVLESLVFAGAL 891
              R    K+++ V++ +   G  
Sbjct: 1452 RQRT---KVSKTVIDYMADMGLF 1471



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 4/90 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--SQKACAAG--I 67
           V L  HS  S ++G   + +++ +       AIAITD   + +  +     +        
Sbjct: 359 VELHCHSKMSDMDGVTEVKDLVKRAHDWGHKAIAITDHGVVQAFPDANHYIETLDKDDPF 418

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           + I G +  +         N+         
Sbjct: 419 KVIYGVEGYLVDDLTDVAVNEKGQTLDDTF 448


>gi|89897057|ref|YP_520544.1| hypothetical protein DSY4311 [Desulfitobacterium hafniense Y51]
 gi|89336505|dbj|BAE86100.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1447

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 166/926 (17%), Positives = 305/926 (32%), Gaps = 197/926 (21%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            DID++   +   + +         ++L     G + L +LVS  +L D   +  RI  S 
Sbjct: 596  DIDLKAADEAARKDEYKKLKTYHAIILAKDYTGLKNLYKLVSYSHL-DYFYKKPRILKS- 653

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR- 194
            L +  +EGLI+ +  S G + +A     S+   + +           Y+ +Q     D  
Sbjct: 654  LYKKYSEGLILGSACSEGELYQAILLGRSEEEIESIAEEYD------YLEIQPLGNNDYL 707

Query: 195  -------------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
                             ++V L      P+VAT +  FL  ED E +  ++        +
Sbjct: 708  IRTEQVPGKDYLMEINRKIVALGEKLNKPVVATGDVHFLDPED-EIYRRILEAGQGFKDA 766

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
             +  P                      +A E  V      + + +  +PI         +
Sbjct: 767  DQQPPLYLKTTEEMLEEFAYLGE---DKAYEVVVTNTNLIADLCEPISPISSEKATPHIE 823

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              ++  +     KA            +         +QRLD EL+ I +  FS  ++I  
Sbjct: 824  GCEETIKEIAFGKAHE----------LYGNPLPDIVQQRLDRELDSIIKNGFSVMYIIAQ 873

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------- 399
              +  + ++   VG  RGS   SV AY   IT+++ L                       
Sbjct: 874  KLVWKSNEDGYLVG-SRGSVGSSVAAYMTGITEVNALPPHYRCPSCKYSDFSDHGPKIGF 932

Query: 400  ------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
                                + FE FL  +    PD D++F  + + +  +Y +  +G  
Sbjct: 933  DLPDRECPVCGTQLDKDGIDIPFETFLGFNGDKEPDIDLNFSGEYQAKAHKYTEVIFGKG 992

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
               +  T G++  K A   V +     + + +R                           
Sbjct: 993  TTFKAGTIGTIADKTAFGYVRKY----FEEKNRTANKAE--------------------- 1027

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYR---DVRSDLPVT 556
                     ++ IS+   G+ R +  H  GI++    R + +  P+     D  SD+  T
Sbjct: 1028 ---------IIRISKGCTGIKRTSGQHPGGIIVVPKGREIFEFCPVQHPADDPNSDIITT 1078

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             F+   I+       + L L  L     ++  + Q    VD   IP DD +T  L ++  
Sbjct: 1079 HFDYHSID------QNLLKLDILGHDDPTVIRMLQDITGVDPKTIPMDDKKTMSLFSSTE 1132

Query: 617  --------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
                          T GI +  +  +R  L    P   ED+I +  L          V+ 
Sbjct: 1133 ALGVTPEQINSKVGTFGIPEFGTRFVRGMLLDTLPKAFEDLICISGLSH-----GTDVWL 1187

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
                           +      T    +     +    +  G   + A  +   + K  K
Sbjct: 1188 GNA----------KDLIDAGTVTLSEAVCTRDEIMTYLIRKGLPPNTAFKIMEIVRKG-K 1236

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
               + +   + +   ++ + +    +  ++      Y F K+HAAAY +++++ AW K H
Sbjct: 1237 ALKEPKWPEYETLMREHDVPEWYIDSCRKI-----KYMFPKAHAAAYVMMAFRIAWFKVH 1291

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQ---------------------------------DA 809
             P+ + AA  T+     +                                        + 
Sbjct: 1292 IPLAYYAAYFTIRAKAFDAEFMIFGKEKVKAKMKEIEALGNQAAPKDKDMYDDLEIVLEM 1351

Query: 810  RQFNIQIMPPSVN-TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
             +     +P  +  +    F+V  N +   L +I G+GT  A  +  A+ +KPF+SLED 
Sbjct: 1352 YERGFSFLPIDIYASHATKFQVEGNALRPPLNSISGMGTIAAEGLYNAAQEKPFNSLEDV 1411

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCF 894
              R    K+    +E L      DC 
Sbjct: 1412 KKR---GKIGNSTMELLSK---FDCL 1431



 Score = 82.9 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 3/102 (2%)

Query: 1   LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           + Q L K+   V L +H+  S ++      +++ +       AIAITD   + S  E  +
Sbjct: 327 IRQDLAKAKR-VELHLHTQMSQMDAMSGATDLIKRAMNWGMKAIAITDHGVVQSFPEAHK 385

Query: 61  KA-CAA-GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
                   ++ I G +  +       +T+       T   ++
Sbjct: 386 LLGRDNPNMKVIYGVEAYLAPDKKPSVTHPKGQSIDTTYCVL 427


>gi|229162754|ref|ZP_04290711.1| DNA polymerase III polC-type [Bacillus cereus R309803]
 gi|228620636|gb|EEK77505.1| DNA polymerase III polC-type [Bacillus cereus R309803]
          Length = 1433

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 152/923 (16%), Positives = 294/923 (31%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDGMYRKILVSSQGGA-- 754

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                     P  + +   EM+  FS L E +   + +         +      +      
Sbjct: 755  -NPLNRHSLPPVHFRTTDEMLECFSFLGEDVAKEIVVTNTQKVASLIGDVHPVKDDL--Y 811

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 812  TPKIEGADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPACNVPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKVLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVSGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEDMKSNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATEFIIDGDSLIPPFNAVPGLGTNAALSIVEARKNGDFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDSQGCLGDL 1424



 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 421


>gi|237795859|ref|YP_002863411.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum Ba4 str. 657]
 gi|229260819|gb|ACQ51852.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum Ba4 str. 657]
          Length = 1432

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 148/905 (16%), Positives = 284/905 (31%), Gaps = 189/905 (20%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  +++LV  A G + L +LVS+  L +   +  R+  S + E   EGLI+ +   +
Sbjct: 603  KEPTYHLIILVKNAVGLKNLYKLVSKSNL-EYFFKRPRMAKSLINEY-KEGLIIGSACEA 660

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRES 198
            G I +      ++   K ++ F        Y+ +Q     +                   
Sbjct: 661  GQIYKEILKGKTKEELKNMIDFYD------YLEIQPLGNNEFLVKNGSVKDEKELEEINK 714

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++ +L   +  P+VAT +  FL EE +E    ++        +    P          + 
Sbjct: 715  KICELGEFYNKPVVATCDVHFLDEE-HEVFRRILMSGQGFSDADNQPPLYFRTTEEMLKE 773

Query: 259  EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
                             E+    +  +      +    E+      +  E ++R   +  
Sbjct: 774  FEYLGEE-------KAKEVVIYNTNKIADMIDEIKPIPEETFPPKIEGAEEDIRRMTIEK 826

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
                            +   +RL  ELN I    ++  +LI    +  + ++   VG  R
Sbjct: 827  AHAIYGDPL------PEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SR 879

Query: 379  GSGAGSVTAYALTITDIDPLR--------------------------------------- 399
            GS   S  A    IT+++ L                                        
Sbjct: 880  GSVGSSFAATMSDITEVNGLPPHYVCPKCKYSEFFTDGSVGSGADLEDKDCPNCGTKLIK 939

Query: 400  --FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
                + FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A
Sbjct: 940  DGHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTA 999

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
               V + L                                    +    +   +  +S+ 
Sbjct: 1000 YGFVKKYLD----------------------------------EKNIKANNAEIERLSKG 1025

Query: 518  LEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFD 572
              G+ R +  H  GI  V  D  +    P+         D+  T F+   I    L+K D
Sbjct: 1026 CTGVKRTSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSI-SGRLLKLD 1084

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQL 623
             LG    T+L+   D        V L         T           +    GT G+ + 
Sbjct: 1085 ILGHDDPTVLRMLQDLTQVDPKSVPLGDPKVISLFTSPEALGVTEEDIDCPVGTYGLPEF 1144

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +RQ L   +P    +++ +  L          V+ N      K             
Sbjct: 1145 GTKFVRQMLLDTKPKSFAELVRISGLSH-----GTDVWLNNAQYFIKEGYT--------- 1190

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
              +  I  ++ +M             A  +   + K      +++     +   ++ +  
Sbjct: 1191 TIKDCISTRDDIMVYLLQ-KELPPKSAFTIMEKVRKGKGLTEEQE-----ALMKEHDVPD 1244

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--- 800
                +  ++      Y F K HA AY +++ + A+ K +YP  + A   ++  D+ +   
Sbjct: 1245 WYIESCKKI-----KYMFPKGHAVAYVMMAMRIAYFKVYYPRAYYATYFSVRADDFDADL 1299

Query: 801  ------------------------------KIKKFCQDARQFNIQIMPPSVNTPCV-DFK 829
                                           I +   +  +  I+ +   +       F 
Sbjct: 1300 IVKGEEKIKEKMNELYAMGNNITQKDKGLLTILEISYEMYKRGIKFLKVDLYKSNATKFL 1359

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +  + I   L+A++GVG   A+ I E+  +  F S ED   R    K+ + V+E+L   G
Sbjct: 1360 IEGDSIRPPLSALQGVGKNAAKSIEESRLEGEFISKEDLRLRT---KVTKTVIETLENHG 1416

Query: 890  ALDCF 894
             L   
Sbjct: 1417 CLRGM 1421



 Score = 99.5 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 35/86 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++G   ++ ++ + A     A+AITD   + +  +    A  + I+ I 
Sbjct: 333 VELHMHSQMSAMDGMTPVSELVKRAAKWGHKAVAITDHGVVQAYPDAMSAAKKSNIKVIY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       ++  G        
Sbjct: 393 GIEAYLVDDGVPIVSKAGDKTIEDTF 418


>gi|168184630|ref|ZP_02619294.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum Bf]
 gi|182672306|gb|EDT84267.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            botulinum Bf]
          Length = 1432

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 148/905 (16%), Positives = 284/905 (31%), Gaps = 189/905 (20%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS 152
                  +++LV  A G + L +LVS+  L +   +  R+  S + E   EGLI+ +   +
Sbjct: 603  KEPTYHLIILVKNAVGLKNLYKLVSKSNL-EYFFKRPRMAKSLINEY-KEGLIIGSACEA 660

Query: 153  GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRES 198
            G I +      ++   K ++ F        Y+ +Q     +                   
Sbjct: 661  GQIYKEILKGKTKEELKNMIDFYD------YLEIQPLGNNEFLVKNGSVKDEKELEEINK 714

Query: 199  QVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRS 258
            ++ +L   +  P+VAT +  FL EE +E    ++        +    P          + 
Sbjct: 715  KICELGEFYNKPVVATCDVHFLDEE-HEVFRRILMSGQGFSDADNQPPLYFRTTEEMLKE 773

Query: 259  EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
                             E+    +  +      +    E+      +  E ++R   +  
Sbjct: 774  FEYLGEE-------KAKEVVIYNTNKIADMIDEIKPIPEETFPPKIEGAEEDIRRMTIEK 826

Query: 319  LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
                            +   +RL  ELN I    ++  +LI    +  + ++   VG  R
Sbjct: 827  AHAIYGDPL------PEIVEKRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVG-SR 879

Query: 379  GSGAGSVTAYALTITDIDPLR--------------------------------------- 399
            GS   S  A    IT+++ L                                        
Sbjct: 880  GSVGSSFAATMSDITEVNGLPPHYVCPKCKYSEFFTDGSVGSGADLEDKDCPNCGTKLIK 939

Query: 400  --FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
                + FE FL  +    PD D++F  + +  V +Y +  +G   V +  T G++  K A
Sbjct: 940  DGHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTA 999

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
               V + L                                    +    +   +  +S+ 
Sbjct: 1000 YGFVKKYLD----------------------------------EKNIKANNAEIERLSKG 1025

Query: 518  LEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFD 572
              G+ R +  H  GI  V  D  +    P+         D+  T F+   I    L+K D
Sbjct: 1026 CTGVKRTSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSI-SGRLLKLD 1084

Query: 573  FLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQL 623
             LG    T+L+   D        V L         T           +    GT G+ + 
Sbjct: 1085 ILGHDDPTVLRMLQDLTQVDPKSVPLGDPKVISLFTSPEALGVTEEDIDCPVGTYGLPEF 1144

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +RQ L   +P    +++ +  L          V+ N      K             
Sbjct: 1145 GTKFVRQMLLDTKPKSFAELVRISGLSH-----GTDVWLNNAQYFIKEGYT--------- 1190

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
              +  I  ++ +M             A  +   + K      +++     +   ++ +  
Sbjct: 1191 TIKDCISTRDDIMVYLLQ-KELPPKSAFTIMEKVRKGKGLTEEQE-----ALMKEHDVPD 1244

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--- 800
                +  ++      Y F K HA AY +++ + A+ K +YP  + A   ++  D+ +   
Sbjct: 1245 WYIESCKKI-----KYMFPKGHAVAYVMMAMRIAYFKVYYPRAYYATYFSVRADDFDADL 1299

Query: 801  ------------------------------KIKKFCQDARQFNIQIMPPSVNTPCV-DFK 829
                                           I +   +  +  I+ +   +       F 
Sbjct: 1300 IVKGEEKIKEKMNELYAMGNNITQKDKGLLTILEISYEMYKRGIKFLKVDLYKSNATKFL 1359

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +  + I   L+A++GVG   A+ I E+  +  F S ED   R    K+ + V+E+L   G
Sbjct: 1360 IEGDSIRPPLSALQGVGKNAAKSIEESRLEGEFISKEDLRLRT---KVTKTVIETLENHG 1416

Query: 890  ALDCF 894
             L   
Sbjct: 1417 CLRGM 1421



 Score = 99.5 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 35/86 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S ++G   ++ ++ + A     A+AITD   + +  +    A  + I+ I 
Sbjct: 333 VELHMHSQMSAMDGMTPVSELVKRAAKWGHKAVAITDHGVVQAYPDAMSAAKKSNIKVIY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       ++  G        
Sbjct: 393 GIEAYLVDDGVPIVSKAGDKTIEDTF 418


>gi|253582216|ref|ZP_04859439.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium
            ATCC 27725]
 gi|251835755|gb|EES64293.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium varium
            ATCC 27725]
          Length = 1446

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 158/932 (16%), Positives = 312/932 (33%), Gaps = 182/932 (19%)

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             ++ I   + +              +I++LV   +G   +  LVS  ++   G +  R+ 
Sbjct: 584  MEMGITNLNEITGALPINVKKQDTSNIIVLVKNLQGLHNMYRLVSEAHVDYYGNKKPRVL 643

Query: 133  LSWLQEIGTEGLIMLTGGS-----SGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYVN 185
             S +++   EGLI+ +  S      G +   +     +  EK +  +   +L     Y  
Sbjct: 644  KSHIEKY-REGLIIGSSLSSHFMNDGELSNYYMRYDYEKIEKNIDFYDYIELLPKGAYSE 702

Query: 186  LQRHRGYD--------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            L    G                   LA      + A++N  +++E D +   +L+  + S
Sbjct: 703  LYEDDGTGTISSFSMIEDMNKYFYNLAKERGKLVTASSNVHYINETDSKIRSILLYGSGS 762

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                 + +                  +     A E  V      + +++V  P+   F  
Sbjct: 763  VYRENQYKTDNKFYFRTTEELVNEFDYMGEDIAKEIVVSGTNTIADMIEVIKPVPDGFYP 822

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + D      EN ++                      +  + RL+ EL  I    FS  +
Sbjct: 823  PKID----NAENIVKEMTYEKAYRIYGNPL------PEIVKARLERELGAIIGNGFSVLY 872

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            L     ++ +  N   VG  RGS   S+ AY + IT+++ L                   
Sbjct: 873  LSAQKLVKKSLDNGYLVG-SRGSVGSSLVAYMMDITEVNALYPHYICTNPECKNSEFIER 931

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                   +S+ FE F+  +   +PD D++F  + + E+ RY + 
Sbjct: 932  EGVGIDLPEKICPKCGQPYKRDGYSIPFEVFMGFNGEKVPDIDLNFSGEYQSEIHRYCEQ 991

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G E V +  T  +L  K A   V +  +    + +R                      
Sbjct: 992  LFGKENVFKAGTISTLAEKNAEGYVRKYFEEHEMKGNRA--------------------- 1030

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVRS--- 551
                          ++ +++K EG  +    H  G+V+  R   + +  P+ +       
Sbjct: 1031 -------------EIVRLAKKCEGAKKTTGQHPGGMVVVPRDHSIYEFCPVQKPANDEKN 1077

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
            D   T F+   +++  L+K D LG    T ++     + Q    VD+  IP  D ET  +
Sbjct: 1078 DSITTHFDYHVMDE-QLVKLDILGHDDPTTIK-----MLQEYTGVDIYTIPIADPETLKI 1131

Query: 612  LTTKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
             +                 T G+ +  +  +RQ L    P    +++ +  L   G    
Sbjct: 1132 FSGTESLGITPEDINSVVGTFGVPEFGTPFVRQMLIDTMPKTFAELVRISGLSH-GTDVW 1190

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            +         K              K T   +I     +    +  G     A  +   +
Sbjct: 1191 LNNAQEFIRQK--------------KATLSQVITVRDDIMNYLIDQGLEKGTAFKIMEFV 1236

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K    +  +  E+F +   ++ +++    +   +      Y F K HA AY +++ + A
Sbjct: 1237 RKGKPSKDPEGWEKFSNEMKEHDVAEWYIESCRRI-----KYMFPKGHAVAYVMMAMRIA 1291

Query: 778  WMKTHYPVEFLAASMTLEMDNVEK-------------------------------IKKFC 806
            + K HYP+ F AA ++ + ++ +                                I +  
Sbjct: 1292 YFKVHYPLAFYAAYLSRKAEDFDYEIMSDPKTAKEHLAVLSKEPKLDVKKKAEMAICEII 1351

Query: 807  QDARQFNIQIMPPSVNTPC-VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
             +      + +P  V T     F + D +I   L A+ G+G     ++++      F S 
Sbjct: 1352 VEMYARGYEFLPIDVYTSAGFKFTIEDGKIRIPLIALNGLGGAVIENLIKEREVSKFLSY 1411

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            ED   R    K+++ ++E L    A+D    +
Sbjct: 1412 EDLKRRT---KISQTIIEKLKSINAVDSLSET 1440



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS  S + G   +++++ +  A    A+AITD   + S     + A     + I+
Sbjct: 334 VELHTHSKMSEMVGVEDISDLIKQAIAYGHKAMAITDYAVVHSFPFAYKAAKGKDFKAIL 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           GC++ +   D+  + +    P      +V 
Sbjct: 394 GCEMYMVNDDSEMVRSSKDIPIEEENFVVF 423


>gi|267798811|gb|ACY79086.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 203

 Score =  221 bits (564), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 64/214 (29%), Positives = 104/214 (48%), Gaps = 12/214 (5%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           +AA   PA+A+TD   L   ++F   A   G++PIIG    +          Q +     
Sbjct: 1   VAAMGMPAMALTDFTILCGLVKFYSTAHNCGVKPIIGADFTL----------QSEEFGDE 50

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
           +  + LL     GY+ L  L+S+ YL    +    I  +WL E   EGLI+L+GG SG +
Sbjct: 51  LTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVE-HAEGLIVLSGGKSGEV 109

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVAT 214
            RA    + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VAT
Sbjct: 110 GRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVAT 169

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
           N  +F++EE +EAH++ +A+     +    RP+ 
Sbjct: 170 NEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKN 203


>gi|167037626|ref|YP_001665204.1| DNA polymerase III PolC [Thermoanaerobacter pseudethanolicus ATCC
            33223]
 gi|320116041|ref|YP_004186200.1| DNA polymerase III subunit alpha [Thermoanaerobacter brockii subsp.
            finnii Ako-1]
 gi|166856460|gb|ABY94868.1| DNA polymerase III, alpha subunit [Thermoanaerobacter
            pseudethanolicus ATCC 33223]
 gi|319929132|gb|ADV79817.1| DNA polymerase III, alpha subunit [Thermoanaerobacter brockii subsp.
            finnii Ako-1]
          Length = 1407

 Score =  221 bits (563), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 159/936 (16%), Positives = 304/936 (32%), Gaps = 195/936 (20%)

Query: 67   IQPI-----IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            I+ I     +G +  +   + +   ++       V  + +LV   +G + L E++S+  L
Sbjct: 550  IKTIDRLKELGVE-KVKDINAILKESEVDIRKLPVYHVTILVKDQKGLRNLYEIISKSNL 608

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLFGD 180
             +   ++ RI  S L     EGLI+ +    G + RA   N  +   E  +  +      
Sbjct: 609  -EYFHRTPRIPKSLLISR-REGLIIGSACEQGEVFRAIVSNLEEKKLENIISFYD----- 661

Query: 181  RLYVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
              Y+ +Q     +              R    ++  L   +   +VAT +  FL   D  
Sbjct: 662  --YLEVQPVGNNEFLIGKGEVKSVEELREINRKIYLLGKKYNKLVVATGDVHFLDPWDDI 719

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
               +LMA          DR +        +       +     A E  ++   + + +++
Sbjct: 720  YRKILMA---GKGYKDADR-QPPLYFKTTDEMLKEFEYLGEEVAKEIVIDNPNKIADLVE 775

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               PI         +      E ELR   +                  +  + RLD ELN
Sbjct: 776  EVKPIPDGTFPPVIEG----AEEELRKLTLDKAHEIYGDPL------PEIVQNRLDRELN 825

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------- 399
             I    ++  ++I    +  + K+   VG  RGS   S+ A    IT+++PL        
Sbjct: 826  SIINNGYAVMYIIAQKLVSKSLKDGYLVG-SRGSVGSSLVATMSGITEVNPLPPHYVCPN 884

Query: 400  ----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQD 425
                                              F + FE FL  +    PD D++F  +
Sbjct: 885  CKYSEFITDGSYGCGVDMPDKTCPHCGTLMRKDGFDIPFEVFLGFEGDKEPDIDLNFSGE 944

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +    +Y +  +G   V +  T G+L  K A   V +  +                   
Sbjct: 945  YQPIAHKYTEELFGKGHVFRAGTIGTLADKTAYGYVKKYFE------------------- 985

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLV 543
                            R        +  ++    G+ R    H  GI++  +   +    
Sbjct: 986  ---------------ERNLIVHKSEIKRLTVGCTGVKRTTGQHPGGIMVVPKDKSIYDFT 1030

Query: 544  PMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            P+     ++    +T           L+K D LG    T+++   D       ++ L   
Sbjct: 1031 PIQHPADAEDTDVITTHFDYHSISGRLLKLDILGHDDPTVIRMLEDLTGINAREIPLDDK 1090

Query: 602  PFDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                  T           L T  GTLG+ +  +  +RQ L   +P    +++ +  L   
Sbjct: 1091 KTMSLFTSVEALGIDPEELNTPVGTLGLPEFGTKFVRQMLIDTRPTTFAELVRISGLSHG 1150

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                         N ++ I      +  ++     +++Y         +  G     +  
Sbjct: 1151 -------TDVWLNNAQDIIREGIATLKEVISTRDDIMLYL--------ISKGMDKKLSFK 1195

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K      ++          K+G+      +  ++      Y F K+HA AY ++
Sbjct: 1196 IMENVRKGKGVTQEEI-----EEMRKHGVPNWFIESCQKI-----KYMFPKAHAVAYVIM 1245

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQDARQFNIQIMPPS--- 820
            +++ A+ K HYP  F A   T+  D+          + IK   ++         P     
Sbjct: 1246 AFRIAYFKVHYPEAFYATYFTVRADDFNLDIVLKGKDSIKNAIKEIEAKGNNASPKEKSL 1305

Query: 821  ----------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                                    +  V F + +  +   L +++GVG   A+ I +   
Sbjct: 1306 LTVLEVALEMYLRGFKFINVDLYKSDAVKFFITEEGLLPPLNSLEGVGIQAAKTIAQERE 1365

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +  F S+EDF +R    K+++ V+E L   G L   
Sbjct: 1366 NGKFLSVEDFRNRT---KVSKTVIEILKQYGCLTDL 1398



 Score = 84.5 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 36/88 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S   ++ + A     AIAITD   + +  E  + +   G++ I 
Sbjct: 309 VELHLHTQMSSMDAVASATEVIKRAAKWGHKAIAITDHAVVQAFPEAMEASSKYGVKVIY 368

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
           G +  +       +T   +       ++
Sbjct: 369 GVEGYLVDDGVPIVTGDTEATLEDEFTV 396


>gi|218508746|ref|ZP_03506624.1| DNA polymerase III protein, alpha subunit [Rhizobium etli Brasil 5]
          Length = 393

 Score =  221 bits (563), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 115/297 (38%), Gaps = 35/297 (11%)

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
            +YGF +SHAA++A++ Y ++W+K +YP  F AA +  +        +  +DAR+  ++I+
Sbjct: 1    EYGFPESHAASFALLVYASSWLKAYYPDVFCAAMLNSQPMGFYAPAQLVRDAREHGVRIL 60

Query: 818  PPSVNTPCVDFKVGD----------------------NRIYYSLAAIKGVGTTTARHIME 855
               +N    D  + +                      + +      IKG+ +   + ++ 
Sbjct: 61   AVDINESEWDCTLEEAVFDRKTVDFRHGQMREIIKTRHAVRLGFRQIKGLSSDDMKRLVG 120

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
                  + S+ D   R     L + V+E L  A A      SR + L ++  +       
Sbjct: 121  NRGQG-YGSVRDLWLR---SGLPKSVIERLADADAFRSIHLSRREALWAVRAL------- 169

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            +     +   +F   +          K        +   + R L      HP+   +  L
Sbjct: 170  DVKSAAEELPLFEQVRHIDLQPEPAAKLPDMLPGEQVIEDYRYLSLSLKAHPVSFLREEL 229

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            RK GI    + ++   G  + +A +V+ +Q+  + KG  + ++T  +      A  +
Sbjct: 230  RKAGITRNVDLLSVPNGKRVTIAGLVLVRQRPGSAKG--VIFMTLEDETGVANAIVW 284


>gi|94502355|ref|ZP_01308822.1| DNA polymerase III alpha subunit [Candidatus Sulcia muelleri str.
           Hc (Homalodisca coagulata)]
 gi|94451087|gb|EAT14045.1| DNA polymerase III alpha subunit [Candidatus Sulcia muelleri str.
           Hc (Homalodisca coagulata)]
          Length = 511

 Score =  221 bits (563), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 61/280 (21%), Positives = 110/280 (39%), Gaps = 17/280 (6%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------- 63
           + H+  H+S+S+L     +N+++ K       A+ ITD  N+     F  +         
Sbjct: 236 YSHIHNHTSFSILSSTXDINSLIKKTIEYDMDAVGITDYGNMMGVFNFINRIKNINDNFL 295

Query: 64  -AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               I+PIIGC+L I   D +K T         + + V       GY  L +L S  ++ 
Sbjct: 296 VKKKIKPIIGCELYISYNDLIKKT-------DKIYNQVFFAKNKNGYYNLSKLCSHGFID 348

Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                   I  + +++     LI ++G  +  I           AEK    +  LFGD  
Sbjct: 349 GYYSGIPIIGKNLVEKYKA-NLIAVSGDLNSEIPFTILNKGENEAEKVFKWWHNLFGDDF 407

Query: 183 YVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
           Y+ + RH   +    +Q +++ +    +  +  NN+ +LS++DY AHD+L+ V +S   S
Sbjct: 408 YIEILRHGLKEEDHVNQILLKFSKKFNVKFIPQNNNFYLSQKDYHAHDILLCVKNSQKQS 467

Query: 242 QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
                         N+       + +     +  E     
Sbjct: 468 TPIGKGRGFRFGFPNQEFYFKNKNQMYNLFSDLPEAFDNL 507


>gi|229061421|ref|ZP_04198766.1| DNA polymerase III polC-type [Bacillus cereus AH603]
 gi|228717844|gb|EEL69492.1| DNA polymerase III polC-type [Bacillus cereus AH603]
          Length = 1433

 Score =  221 bits (562), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 152/923 (16%), Positives = 293/923 (31%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAIYRKILVSSQGGA-N 755

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                           N       F    +A E  V    + + ++    P+       + 
Sbjct: 756  PLNRHSLPPVHFRTTNEMLDCFSFLGEDKAKEIVVTNTHKIASLIGDVRPVKDDLYTPKI 815

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +      ++E R+ +           +I      +    RL+ EL  I    F+  +LI 
Sbjct: 816  EG----ADDETRDMSYIMAR------SIYGDELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPTCNVPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKLLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEEMRNNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAAFSIVEARKNGDFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDGQGCLGDL 1424



 Score = 74.8 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S++ ++ +       AIA+TD     S  E       AG++ + 
Sbjct: 332 VELHLHTPMSQMDAVTSVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVLY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 421


>gi|229134625|ref|ZP_04263435.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196]
 gi|228648886|gb|EEL04911.1| DNA polymerase III polC-type [Bacillus cereus BDRD-ST196]
          Length = 1433

 Score =  221 bits (562), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 152/923 (16%), Positives = 293/923 (31%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAIYRKILVSSQGGA-N 755

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                           N       F    +A E  V    + + ++    P+       + 
Sbjct: 756  PLNRHSLPPVHFRTTNEMLDCFSFLGEDKAKEIVVTNTHKIASLIGDVRPVKDDLYTPKI 815

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +      ++E R+ +           +I      +    RL+ EL  I    F+  +LI 
Sbjct: 816  EG----ADDETRDMSYIMAR------SIYGDELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPTCNVPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKLLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEEMRNNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAAFSIVEARKNGDFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDGQGCLGDL 1424



 Score = 74.8 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S++ ++ +       AIA+TD     S  E       AG++ + 
Sbjct: 332 VELHLHTPMSQMDAVTSVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVLY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 421


>gi|163941555|ref|YP_001646439.1| DNA polymerase III PolC [Bacillus weihenstephanensis KBAB4]
 gi|163863752|gb|ABY44811.1| DNA polymerase III, alpha subunit [Bacillus weihenstephanensis KBAB4]
          Length = 1433

 Score =  221 bits (562), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 152/923 (16%), Positives = 293/923 (31%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAIYRKILVSSQGGA-N 755

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                           N       F    +A E  V    + + ++    P+       + 
Sbjct: 756  PLNRHSLPPVHFRTTNEMLDCFSFLGEDKAKEIVVTNTHKIASLIGDVRPVKDDLYTPKI 815

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +      ++E R+ +           +I      +    RL+ EL  I    F+  +LI 
Sbjct: 816  EG----ADDETRDMSYIMAR------SIYGDELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPTCNVPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKLLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEEMRNNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAAFSIVEARKNGDFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDGQGCLGDL 1424



 Score = 74.8 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S++ ++ +       AIA+TD     S  E       AG++ + 
Sbjct: 332 VELHLHTPMSQMDAVTSVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVLY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 421


>gi|295696154|ref|YP_003589392.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
 gi|295411756|gb|ADG06248.1| DNA polymerase III, alpha subunit [Bacillus tusciae DSM 2912]
          Length = 1428

 Score =  221 bits (562), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 162/916 (17%), Positives = 296/916 (32%), Gaps = 205/916 (22%)

Query: 90   KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL-SWLQEIGTEGLIMLT 148
                       +LV    G + L  LVS  +      +  RI    WL     EGL+M T
Sbjct: 598  DVSHARPYHATILVKNPTGLKNLYRLVSLAHTR-YLHRQPRIPRTEWLN--YREGLMMGT 654

Query: 149  GGSSGPIDRAFFFNS-SQVAEKRLLTFKKLFGDRLYVNLQRHRGY------DRYR----- 196
            G   G + +A       +     +  +        +V +Q    Y      +  R     
Sbjct: 655  GCLRGELFQALLRGRSDEELLDIIQRYD-------FVEIQPLDQYRPLLRNEEIRDLEAV 707

Query: 197  ---ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                 ++++LA     P+VAT +  +L  ED    D+L A ++      +        H+
Sbjct: 708  AEYHRRILELADRAGRPVVATGDVHYLDPEDRIYRDILQAGSN-----MEVDDPDAGYHF 762

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
                  + +     P A+E  VE A R +  ++V  PI         D      E ++R+
Sbjct: 763  RTTEEMLAAFGHLGPRAVEVVVENANRIAEEIEVVKPIPDELYTPVIDG----AEEQIRS 818

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
             A                   +  + RL+ ELN I    ++  +LI    +  + K+   
Sbjct: 819  LAYEKARRLYGDPL------PELVKARLEKELNSIINHGYAVIYLIAHKLVTQSLKDGYL 872

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLR---------------------------------- 399
            VG  RGS   S+ A    IT+++PL                                   
Sbjct: 873  VG-SRGSVGSSLVATMTDITEVNPLPPHYLCPACHYSEFVTAGSVGSGFDLPDRECPRCG 931

Query: 400  -------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
                     + FE F+      +PD D++F  + +    +Y ++ +G + V +  T  ++
Sbjct: 932  EKLGKDGHDIPFETFMGFKGDKVPDIDLNFSGEYQSRAHKYTEHLFGSDHVFRAGTISTV 991

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512
              K A   V +                                  F E R        L 
Sbjct: 992  AEKTAYGYVRK----------------------------------FAEERGLQLRNAELT 1017

Query: 513  EISQKLEGLYRHASTHAAG--IVIGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAG 567
             + Q   G+ R    H  G  +V  ++ +    P+             T F+   I    
Sbjct: 1018 RLVQGCTGIKRTTGQHPGGLMVVPSNKEIFDFCPIQFPADDKTAGTRTTHFDYHSIHD-- 1075

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG----------- 616
                + L L  L     ++  + Q    V    IP DD +T  + +              
Sbjct: 1076 ----NLLKLDLLGHDDPTVIRMLQDLTGVAPKEIPVDDPDTMSIFSGTEVLGVTPEQIRS 1131

Query: 617  ---TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
               T GI +  +  +RQ LE  +P    +++ +  L                N ++ I S
Sbjct: 1132 TVGTYGIPEFGTKFVRQMLEDTKPKTFAELVRISGLSHG-------TDVWLNNAQDLIRS 1184

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  ++     +++Y  Q         G    +A  +  ++ K      + +     
Sbjct: 1185 GTARLSEVISTRDDIMVYLIQ--------KGMEPVQAFRIMESVRKGKGLTPEDE----- 1231

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            +   ++G+      +  ++      Y F K+HA AY +++ + A+ K H P+ F A   T
Sbjct: 1232 ATMKEHGVPDWYIASCKKI-----KYMFPKAHATAYVLMAVRIAYFKVHNPLAFYATYFT 1286

Query: 794  LEMDNVEKIKKFCQ---------------------------------DARQFNIQIMPPS 820
            +  D+ +                                        +  Q   +  P  
Sbjct: 1287 VRADDFDLQLVLQGPDVVLRRIEAVEAKGSQATAKEKSLLTVLEVALEMMQRGFRFGPLD 1346

Query: 821  VNTPCVDFKV--GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
            +        V  G+  +    +A+ G+G + AR++  A  +  F S++D   R    +L+
Sbjct: 1347 LYRSDATRFVPDGEGTLIPPFSAVAGIGESAARNVAAAREEGEFLSVQDLQERA---RLS 1403

Query: 879  RRVLESLVFAGALDCF 894
            R V+E L   G L   
Sbjct: 1404 RPVVELLEQMGCLKGL 1419



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 42/90 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH+  S L+G  S  +++ + A     A+A+TD     +  +F ++A  AGI+PI+
Sbjct: 330 VELHVHTPMSALDGVSSPGDLVRRAAEWGHSALAVTDHGVAQAFPDFFREAQKAGIKPIL 389

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G +  +    +  +      P      +V 
Sbjct: 390 GIEAYLVDDGSSVVFGADHRPLEDAEFVVF 419


>gi|293115337|ref|ZP_05790986.2| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876]
 gi|292810483|gb|EFF69688.1| DNA polymerase III, alpha subunit [Butyrivibrio crossotus DSM 2876]
          Length = 1476

 Score =  221 bits (562), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 145/906 (16%), Positives = 279/906 (30%), Gaps = 162/906 (17%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             ++D  + ++  N            ++L  +  G   L  L+S  +L     +  RI  S
Sbjct: 620  FNLDEINEIEEFNINAIKKAKTYHAIILADSEVGRVNLYRLISLSHLT-YFNRRPRIPKS 678

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF------GDRLYVNLQR 188
             +++   +GLI+ +   +G + +A    +++    RL  +           +R  +  QR
Sbjct: 679  EVEKY-RDGLILGSACEAGELYQAILNGNTEEEIARLANYYDYLEIQPVGNNRFMIESQR 737

Query: 189  HRGY--DRYR---ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
                  ++       ++V L      P+VAT +  FL+ ED E +  ++        +  
Sbjct: 738  LPQIKSEQDIIDINKKIVALGEKFNKPVVATCDVHFLNPED-EVYRRIIMKGQGFDDADN 796

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              P                      E +     +       ++            +C  +
Sbjct: 797  QAPLFLRTTEEMLEEFKYLGEDKAYEVVVTNTRLIADLCEYIE-------PVRPDKCPPV 849

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                +  LR+                     +    RL+ ELN I    +S  ++I    
Sbjct: 850  IPNCDQTLRDICYNRAHEMYGP------KLPEIVESRLEKELNSIISNGYSVMYIIAQKL 903

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------ 399
            +  + ++   VG  RGS   S  A    +T+++PL                         
Sbjct: 904  VWKSNEDGYLVG-SRGSVGSSFVATMSGVTEVNPLSPHYLCPECYYVDFDSDEVRKFAGG 962

Query: 400  ---------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
                                 F + FE FL  +    PD D++F  + + +   YV+  +
Sbjct: 963  AGCDMPDKICPKCGAKLKKEGFDIPFETFLGFNGDKEPDIDLNFSGEYQAKAHAYVEVIF 1022

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G  +  +  T G+L  K     V +  +                                
Sbjct: 1023 GEGQTYKAGTVGTLADKTVYGYVKKYYE-------------------------------- 1050

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRSD--LP 554
               +        +  I     G+ R    H  GI+       +    P+           
Sbjct: 1051 --EKGERKRSCEINRIVNGGVGVKRSTGQHPGGIIVLPYGEEIHSFTPIQHPANDMTTNI 1108

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT 614
            VT           L+K D LG    T+++   D        +D + IP D  E   L  +
Sbjct: 1109 VTTHFDYHSIDHNLLKLDILGHDDPTMIRMLQDLTK-----LDPTHIPLDSPEVMSLFQS 1163

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
               L I   E  G  +      P+   D    + +       + +V     +    +   
Sbjct: 1164 TEALKINP-EDIGGTKLGCLGIPEFGTDFAMQMLIDTNPQHFSDLVRIAGLSHGTDVWLG 1222

Query: 675  H-PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
            +   +    K T    I     + I  +  G     +  +  ++ K    + +     + 
Sbjct: 1223 NAQTLIEEGKATISTAICTRDDIMIYLINMGIEAGTSFKIMESVRKGKGLKPE-----WE 1277

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
                  G+      +  ++      Y F K+HAAAY +++++ A+ K  YP+E+ A+  +
Sbjct: 1278 ELMVNAGVPDWYIWSCKKI-----KYMFPKAHAAAYVMMAWRIAYCKVFYPLEYYASYFS 1332

Query: 794  LEMDNVEKIKKFC---------------------------------QDARQFNIQIMPPS 820
            +  D+                                         Q+        MP  
Sbjct: 1333 IRADDFSYRIMCFGKDKLDEYIEDYKRRNDSLTNKEQGQLKDMRIVQEMYARGFDFMPID 1392

Query: 821  VNT-PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            +      +F++ D R+     +I G+G T A  I EA+    F S+EDF  +    K + 
Sbjct: 1393 LYKSHSRNFQIVDGRLLPPFKSIDGLGETAADSIYEAAKCGKFLSVEDFIDKAKVPKTSA 1452

Query: 880  RVLESL 885
             V+  L
Sbjct: 1453 AVMVEL 1458



 Score = 78.3 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 6/100 (6%)

Query: 1   LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           +   +EK    V L +H+  S L+G   + +I+ +  +    AIAITD  ++ +  +   
Sbjct: 355 MDYAMEKR---VELHLHTKMSDLDGVSDIKDIIRQAMSWGHNAIAITDHGDVQAFTDAYH 411

Query: 61  KACAAG---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
               +G    + I G +  I       + +     F    
Sbjct: 412 MLRDSGNKDFKVIYGVEAYIVDDLRKIIFDSKGQKFDDTY 451


>gi|110808209|sp|P0C1P9|DPO3_STAAU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|1483182|dbj|BAA13160.1| DNA polymerase III [Staphylococcus aureus]
          Length = 1435

 Score =  220 bits (561), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 157/941 (16%), Positives = 300/941 (31%), Gaps = 182/941 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+       L+   + N K++N+          + L+V   +G + L ++
Sbjct: 577  IKMVQQMKELGV-------LN-HNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKI 628

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 629  VSAS-LVKYFYRTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYD 686

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    T  +P++AT N+ +L E D  A 
Sbjct: 687  FIEIQPPALYQDLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIAR 746

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V+     +  ++  
Sbjct: 747  KILIASQPGNPL--NRSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERV 804

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI         +        E+R  + A       +         Q    RL+ EL  I
Sbjct: 805  VPIKDELYTPRMEG----ANEEIRELSYANARKLYGEDL------PQIVIDRLEKELKSI 854

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 855  IGNGFAVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCK 913

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE+FL      +PD D++F  + +
Sbjct: 914  TSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFEKFLGFKGDKVPDIDLNFSGEYQ 973

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V +          R  +          
Sbjct: 974  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYV-KGYLNDQGIHKRGAE---------- 1022

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPM 545
                                   +  + +   G+      H  GI  V     +    P+
Sbjct: 1023 -----------------------IDRLVKGCTGVKATTGQHPGGIIVVPDYMDIYDFTPI 1059

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA--------QRGV 594
                         T F+   I    ++K D LG    T+++   D               
Sbjct: 1060 QYPADDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSGIDPKTIPVDDKE 1118

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             + +   P     T   +  K             RQ LE  +P    +++ +  L     
Sbjct: 1119 VMQIFSTPESLGVTEDEILCKTGTFGVPNSDRIRRQMLEDTKPTTFSELVQISGLSHG-- 1176

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
                       N +E I +    +  ++     +++Y         + +G   S A  + 
Sbjct: 1177 -----TDVWLGNAQELIKTGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAFKIM 1223

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
             ++ K      +      I    +N +      +  ++      Y F K+HAAAY +++ 
Sbjct: 1224 ESVRKGKGLTEE-----MIETMKENEVPDWYLDSCLKI-----KYIFPKAHAAAYVLMAV 1273

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKK------------------------------ 804
            + A+ K H+P+ + A+  T+   + + I                                
Sbjct: 1274 RIAYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDVLT 1333

Query: 805  ---FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                  +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA  D 
Sbjct: 1334 VLEIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEARDDG 1393

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
            PF S ED   +    +   +++E L   G+L      + QL
Sbjct: 1394 PFLSKEDLNKKAGLYQ---KIIEYLDELGSLPNL-PDKAQL 1430



 Score = 88.3 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 334 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 394 GMEGMLVDDGVPIAYKPQDVVLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 451

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 452 DKFERFSNPHERLSETIINLTHITDDMLVDA------PEIEEVLTEFKEWVGDAIFVA 503


>gi|160903239|ref|YP_001568820.1| DNA-directed DNA polymerase [Petrotoga mobilis SJ95]
 gi|160360883|gb|ABX32497.1| DNA-directed DNA polymerase [Petrotoga mobilis SJ95]
          Length = 989

 Score =  220 bits (561), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 159/943 (16%), Positives = 324/943 (34%), Gaps = 186/943 (19%)

Query: 12  VHLQVHSSYSLLEGALSL-----NNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           V L  HS  S       L       ++D +++  Q A+AITD  N+     F + A   G
Sbjct: 129 VELHAHSKMS-----SKLSILGMEELVDAVSSFGQKAVAITDNENVQIIPYFYEYAKRKG 183

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           I+ I GC+L++  +    +             + +LV   EG + L +++S  ++ +   
Sbjct: 184 IKAIFGCELNVHDERRGIVK-----------HVNVLVKNKEGLKNLYKIISISHM-NVVN 231

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT--FKKLFGDRLYV 184
           +S  I LS L+ +  +GL++ +      +       S+   ++ +    + +LF    Y 
Sbjct: 232 KSAIISLSDLKNL-RKGLLLGSSLDGFLLYSYLNKYSTNDLKEWITFFDYIELFPMNCYN 290

Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE-AHDVLMAVAHSTVVSQK 243
           +L   +G        V ++A     P+V + +  +L EED E  + +++  +  +   + 
Sbjct: 291 DLCLEKGKIIDYSRTVYEIAKDVRKPVVMSGDVHYLREEDREYLNAMIVGTSTKSKPRKT 350

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R         +   E   IF     A E  V+   + +  ++  AP   +         
Sbjct: 351 VRSVNYFRSTSQMYDEAFEIFKKRGIAKEIVVKNTNKIAGEIEELAPFDFKLKAPYIP-- 408

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               +  LR+   +  + R  +         +    R++ EL  I    ++  FLI AD 
Sbjct: 409 --SADQNLRDIVYSNAKKRYGE------KLHRIIIDRIEKELKSIVDNGYAVIFLISADM 460

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------ 399
           ++ + +   P+G  RGS   S+ A+ L IT+++PL                         
Sbjct: 461 VEKSLEMGYPIG-SRGSVGSSLVAFLLGITEVNPLPPHYFCESCGFIEFVENLNLSGFDL 519

Query: 400 ----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                            ++ FE F+      +PD D++F  +   ++ R+++ K+G    
Sbjct: 520 KEKSCPNCGAILNSDGHNIRFEVFMGYSGEKIPDIDVNFSAEIFTDIQRFLEEKFGRNYC 579

Query: 444 AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
            +  T  ++    A++                                          + 
Sbjct: 580 YKAGTISTISRYNAMKMA------------------------------------LNYFKD 603

Query: 504 ADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMY---RDVRSDLPVTQF 558
            D +   L  ISQK++G   +   H + ++I   +  +    P           +  T +
Sbjct: 604 EDMNFAHLFWISQKIKGTKLNTGQHPSAMIIIPQEYDVHDFTPYQYSANSPEIGIVTTHY 663

Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY--------- 609
           + K +E   L+K D L     T L+   D        + +         +          
Sbjct: 664 DFKALEN-DLLKIDVLSHDGPTFLKMLKDLTGYDYNDISMHDERILSLFSSTKELGVDLS 722

Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
            + T  GTLG+ ++ +    + L   +P+   D+    SL                N +E
Sbjct: 723 EIGTEIGTLGVPEVWTPFSHKMLTETKPETFYDLCRTNSLAHG-------TDIWFNNARE 775

Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            ++     ID ++     ++   E          G     A ++   + K  +    + K
Sbjct: 776 IVLKNVAGIDQIVSCRDDILTTLE--------YFGVEPKTAFMVMEKVRKGKELTEKELK 827

Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
                         + A   +    K   Y F K+HA AY +++Y+ A+ K +YP+EF +
Sbjct: 828 AI----------DDSEAPEWYLDSLKKIHYLFPKAHAVAYMIMAYKIAFYKLYYPLEFYS 877

Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD---------------------- 827
              T+     +      +D     I+ +  +      +                      
Sbjct: 878 VYFTIRARFFDIDIIMDEDLTVKTIKKLSKNEYQHNYEESNFYSTLKTAYEMRKRGFGFL 937

Query: 828 -----------FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                      FK+    +   L  ++ +G+  A+ I++   +
Sbjct: 938 RPDLYKSEAKLFKIEGEYLRIPLTKVRNIGSKNAQRILKERGE 980


>gi|326389440|ref|ZP_08211007.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus JW
            200]
 gi|325994445|gb|EGD52870.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus JW
            200]
          Length = 1407

 Score =  220 bits (561), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 159/936 (16%), Positives = 305/936 (32%), Gaps = 195/936 (20%)

Query: 67   IQPI-----IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            I+ I     +G +  +   + +   ++       V  + +LV   +G + L E++S+  L
Sbjct: 550  IKTIDRLKELGVE-KVKDINAILKESEVDIRKLPVYHVTILVKDQKGLRNLYEIISKSNL 608

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLFGD 180
             +   ++ RI  S L  +  EGLI+ +    G + RA   N  +   E  +  +      
Sbjct: 609  -EYFHRTPRIPKSLLISM-REGLIIGSACEQGEVFRAIVSNLEEKKLENIISFYD----- 661

Query: 181  RLYVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
              Y+ +Q     +              R    ++  L   +   +VAT +  FL   D  
Sbjct: 662  --YLEVQPVGNNEFLIEKGEVKSVEELREINQKIYLLGKKYNKLVVATGDVHFLDPWDDI 719

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
               +LMA          DR +        +       +     A E  ++   + + +++
Sbjct: 720  YRKILMA---GKGYKDADR-QPPLYFKTTDEMLKEFEYLGEEVAKEIVIDNPNKIADLVE 775

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               PI         +      E ELR   +                  +  + RLD ELN
Sbjct: 776  EVKPIPDGTFPPVIEG----AEEELRRLTLDKAHEIYGDPL------PEIVQNRLDRELN 825

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------- 399
             I    ++  ++I    +  + K+   VG  RGS   S+ A    IT+++PL        
Sbjct: 826  SIINNGYAVMYIIAQKLVSKSLKDGYLVG-SRGSVGSSLVATMSGITEVNPLPPHYVCPN 884

Query: 400  ----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQD 425
                                              F + FE FL  +    PD D++F  +
Sbjct: 885  CKYSEFITDGSYGCGVDMPDKTCPHCGTLMRKDGFDIPFEVFLGFEGDKEPDIDLNFSGE 944

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +    +Y +  +G   V +  T G+L  K A   V +  +                   
Sbjct: 945  YQPIAHKYTEELFGKGHVFRAGTIGTLADKTAYGYVKKYFE------------------- 985

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLV 543
                            R        +  ++    G+ R    H  GI++  +   +    
Sbjct: 986  ---------------ERNLIVHKSEIKRLTVGCTGVKRTTGQHPGGIMVVPKDKSIYDFT 1030

Query: 544  PMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            P+     ++    +T           L+K D LG    T+++   D       ++ L   
Sbjct: 1031 PIQHPADAEDTDVITTHFDYHSISGRLLKLDILGHDDPTVIRMLEDLTGINAREIPLDDK 1090

Query: 602  PFDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                  T           L T  GTLG+ +  +  +RQ L   +P    +++ +  L   
Sbjct: 1091 KTMSLFTSVEALGIDPEELNTPVGTLGLPEFGTKFVRQMLIDTRPTTFAELVRISGLSHG 1150

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                         N ++ I      +  ++     +++Y         +  G     +  
Sbjct: 1151 -------TDVWLNNAQDIIREGIATLKEVISTRDDIMLYL--------ISKGMDKKLSFK 1195

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K      ++          K+G+      +  ++      Y F K+HA AY ++
Sbjct: 1196 IMENVRKGKGVTQEEI-----EEMRKHGVPNWFIESCQKI-----KYMFPKAHAVAYVIM 1245

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQDARQFNIQIMPPS--- 820
            +++ A+ K HYP  F A   T+  D+          + IK   ++         P     
Sbjct: 1246 AFRIAYFKVHYPEAFYATYFTVRADDFNLDIVLKGKDSIKNAIKEIEAKGNNASPKEKSL 1305

Query: 821  ----------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                                    +  V F + +  +   L +++GVG   A+ I +   
Sbjct: 1306 LTVLEVALEMYLRGFKFINVDLYKSDAVKFLITEEGLLPPLNSLEGVGIQAAKTIAQERE 1365

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +  F S+EDF +R    K+++ V+E L   G L   
Sbjct: 1366 NGKFLSVEDFRNRT---KVSKTVIEILKQYGCLTDL 1398



 Score = 84.5 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 36/88 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S   ++ + A     AIAITD   + +  E  + +   G++ I 
Sbjct: 309 VELHLHTQMSSMDAVASATEVIKRAAKWGHKAIAITDHAVVQAFPEAMEASSKYGVKVIY 368

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
           G +  +       +T   +       ++
Sbjct: 369 GVEGYLVDDGVPIVTGDTEATLEDEFTV 396


>gi|28210957|ref|NP_781901.1| DNA polymerase III PolC [Clostridium tetani E88]
 gi|32469700|sp|Q895K2|DPO3_CLOTE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|28203396|gb|AAO35838.1| DNA polymerase III, alpha chain [Clostridium tetani E88]
          Length = 1427

 Score =  220 bits (561), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 151/943 (16%), Positives = 306/943 (32%), Gaps = 197/943 (20%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             L+  +      I       L++  ++  K  +  K+P      +++LV    G + L +
Sbjct: 568  LLKAFEDLKDKEI-----MNLNMLNEEYFKNQDIKKSP---TYHVIILVKNKIGLKNLYK 619

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR-AFFFNSSQVAEKRLLT 173
            L+S  +L +   +  R+  S + +   EGL++ +   +G + +      S +  ++ +  
Sbjct: 620  LISESHL-NHFYKKPRMPKSLINKY-REGLMIGSACEAGQVYKEVLMDKSKEELKEVISF 677

Query: 174  FKKLFGDRLYVNLQ---------RHRG---YDRYR--ESQVVQLAYTHELPLVATNNSLF 219
            +        Y+ +Q         R+      +  R    ++  LA  + +P+VAT +  F
Sbjct: 678  YD-------YLEIQPIKNNYFMIRNGIVKDEEELRDINKKIYNLAEENNMPVVATCDVHF 730

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            L ++D     +LMA             +        +       +    +A +  V    
Sbjct: 731  LDKKDEVFRKILMAGQ----GFSDAENQPPLYLRTTDEMLKEFEYLGKEKAYKAVVTNTV 786

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
            + +  +    PI       + +      E E+R   +        +         +   +
Sbjct: 787  KIADSIDNIKPIPDETFPPKIEG----SEEEVRKMTIEKAHSIYGE------VLPEIVEK 836

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID--- 396
            RL+ ELN I    ++  +LI    +  + ++   VG  RGS   S+ A    IT+++   
Sbjct: 837  RLEKELNSIINNGYAVLYLIAHKLVDKSVQDGYLVG-SRGSVGSSLVATMTDITEVNGLP 895

Query: 397  -------------------------PLRFSLLF-------------ERFLNPDRMSMPDF 418
                                     P +                  E FL  +    PD 
Sbjct: 896  PHYVCPGCKYNEFITDGSVSSGADLPDKNCPNCGVLLSKDGHDIPFETFLGFEGDKEPDI 955

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  + +  V +Y +  +G  +V +  T G++  K A   V + +             
Sbjct: 956  DLNFSGEYQAVVHKYTEVLFGEGKVFKAGTIGTIAEKTAYGFVKKYIS------------ 1003

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
                                   +  +     +  ++    G+ R    H  GI++  + 
Sbjct: 1004 ----------------------EKDLNVRQAEIERLTLGCSGVKRTTGQHPGGIMVVPQD 1041

Query: 539  --LSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
              +    P+ R    +    +T           L+K D LG    T+L+   D       
Sbjct: 1042 NEIFNFTPIQRPADDNDTDIITTHFDYHSISGRLLKLDILGHDDPTVLRMLQDLTGVDPK 1101

Query: 595  KVDLSLIPFDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
            K+ L+        T           L    GT G+ +  +  +RQ L   QP+   D++ 
Sbjct: 1102 KIPLADPKVMSLFTSPKALGVNAEELKCEVGTYGLPEFGTKFVRQMLVDTQPNSFSDLVR 1161

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +  L          V+ N      K       +   +     ++ Y  Q           
Sbjct: 1162 ISGLSH-----GTDVWLNNAQYYIKEGYT--TLKDCIATRDDIMTYLIQ--------KDL 1206

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
                A  +   + K      +       +   ++ +      +  ++      Y F K H
Sbjct: 1207 PPKIAFTIMEKVRKGKGLTEE-----HEAIMREHDVPGWYIESCKKI-----KYMFPKGH 1256

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------------------- 800
            A AY +++ + A+ K +YP  + A   ++   + +                         
Sbjct: 1257 AVAYVMMAVRIAYFKVYYPTAYYATYFSVRASDFDAETVFKGEEAILNKIDEINSLGNNV 1316

Query: 801  --------KIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTAR 851
                     + + C +     I+ +   +       F + +  I   L+AI+GVG   A+
Sbjct: 1317 TQKDKGLLTVLEICHEMNLRGIKFLKADLYKSNASKFLIEEEGIRIPLSAIQGVGENAAK 1376

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +I+EA  +  F S ED   R    K  + V+E+L   G L   
Sbjct: 1377 NIVEAREEGEFISKEDLNKR---GKATKTVIENLENHGCLRGL 1416



 Score = 97.6 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 34/86 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++G  S  +++ + A     A+AITD   + +  E  + A    I+ I 
Sbjct: 328 VELHLHTKMSAMDGMNSAESLIKRAAKWGHKAVAITDHGVVQAYPEAMEAAKKYNIKIIY 387

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +         N G        
Sbjct: 388 GVEGYLVDDGIPIAINAGHRTLEDSY 413


>gi|311030091|ref|ZP_07708181.1| DNA polymerase III PolC [Bacillus sp. m3-13]
          Length = 1437

 Score =  220 bits (561), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 157/938 (16%), Positives = 306/938 (32%), Gaps = 185/938 (19%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             ++  + A   GI            + N                + LL     G + + +
Sbjct: 578  LVKMLKDAFEKGI--------TFHDELNEHSGTTDAYKRARPSHVTLLAVNEIGLKNIFK 629

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            +VS  ++ +   +  RI  S LQ++  EG+I+ T    G +       S    E     +
Sbjct: 630  IVSISHM-NYFFRVPRIPRSQLQKL-REGIIVGTACDKGEVFEGMMQKSPDEVEGIAEFY 687

Query: 175  --KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
               ++     Y     + L R     +   + +V+L    E P+VAT N  +L +E  + 
Sbjct: 688  DYIEVQPPSNYAHLLELELVRDEKALKEIITNIVKLGEKLEKPVVATGNVHYL-KETDKI 746

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            H  ++  + S                  +       F    +A E  V   ++ + +++ 
Sbjct: 747  HREILVRSQSGANPLNRHQLPDVHFKTTDEMLAAFSFLGEEKAKEIVVTNTQKVAGMIEE 806

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              PI       + +      + E+R  + +                 +   +R++ EL  
Sbjct: 807  IKPIKDDLYTPKIEG----ADEEIREMSYSRARSIYGDDL------PEIVEKRIEKELKS 856

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------- 399
            I    F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL         
Sbjct: 857  IIGHGFAVIYLISQKLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPSC 915

Query: 400  ---------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDR 426
                                               + FE FL      +PD D++F  + 
Sbjct: 916  KKSEFFDDGSVGSGFDLPDKDCPDCGEAFTKDGHDIPFETFLGFKGDKVPDIDLNFSGEY 975

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            +     Y +  +G + V +  T G++  K A   V +      + + R  +         
Sbjct: 976  QPRAHNYTKVLFGEDYVFRAGTIGTVADKTAYGYV-KGYANDRNLILRGAE--------- 1025

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVP 544
                                    +  +S    G+ R    H  GI+       +    P
Sbjct: 1026 ------------------------VDRLSAGCTGVRRSTGQHPGGIIVVPDYMDIFDFSP 1061

Query: 545  MYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            +         +   T F+   I    L+K D LG    T+++   D          +   
Sbjct: 1062 IQYPADDQSSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG--IDPKTIPTD 1118

Query: 602  PFDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
                 + +            ++   GTLGI +  +  +RQ LE  +P    +++ +  L 
Sbjct: 1119 DPYVMKIFSGTESLGVTEEQIMCKTGTLGIPEFGTRFVRQMLEDTKPSTFSELVQISGLS 1178

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
                           N +E I +    +  ++     +++Y         +  G   S A
Sbjct: 1179 HG-------TDVWLGNAQELIHNKTCTLSEVIGCRDDIMVYL--------IYKGLDPSMA 1223

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
              +  ++ K      +     F     KN +      +  ++      Y F K+HAAAY 
Sbjct: 1224 FKIMESVRKGKGLSDE-----FKEEMIKNDVPAWYIDSCLKI-----KYMFPKAHAAAYV 1273

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEK---------IKKFCQDARQFNIQIMPPS- 820
            +++ + A+ K H+P+ + AA  T+  D+ +          I+K  ++     ++  P   
Sbjct: 1274 LMAVRIAYFKVHFPLMYYAAYFTVRADDFDIDTMVKGSAAIRKVVEEINAKGLEASPKEK 1333

Query: 821  ------------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                                      +   DF +  + +     +I G+GT  A +I+ +
Sbjct: 1334 SLLTVMELALEMSERGFSFKKVDLYKSSATDFLIEGDSLIPPFNSIPGLGTNAAINIVNS 1393

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             AD  F S ED   R    ++++ +LE L   G L   
Sbjct: 1394 RADGEFLSKEDLQQR---GRISKTILEYLDNHGCLTGL 1428



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S+++++ +       AIA+TD     +  E        G++ + 
Sbjct: 336 VELHLHTPMSTMDAVSSISSLVAQAKKWGHEAIAVTDHAVAQAYPEAYAAGKKNGVKILY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G ++++         N           +V 
Sbjct: 396 GLEVNLVDDGVPIAYNPAHRNLAEETYVVF 425


>gi|167040287|ref|YP_001663272.1| DNA polymerase III PolC [Thermoanaerobacter sp. X514]
 gi|300914371|ref|ZP_07131687.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
 gi|307724393|ref|YP_003904144.1| DNA polymerase III subunit alpha [Thermoanaerobacter sp. X513]
 gi|166854527|gb|ABY92936.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X514]
 gi|300889306|gb|EFK84452.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X561]
 gi|307581454|gb|ADN54853.1| DNA polymerase III, alpha subunit [Thermoanaerobacter sp. X513]
          Length = 1407

 Score =  220 bits (561), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 159/933 (17%), Positives = 304/933 (32%), Gaps = 195/933 (20%)

Query: 67   IQPI-----IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            I+ I     +G +  +   + +   ++       V  + +LV   +G + L E++S+  L
Sbjct: 550  IKTIDRLKELGVE-KVKDINAILKESEVDIRKLPVYHVTILVKDQKGLRNLYEIISKSNL 608

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLFGD 180
             +   ++ RI  S L     EGLI+ +    G + RA   N  +   E  +  +      
Sbjct: 609  -EYFHRTPRIPKSLLISR-REGLIIGSACEQGEVFRAIVSNLEEKKLENIISFYD----- 661

Query: 181  RLYVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
              Y+ +Q     +              R    ++  L   +   +VAT +  FL   D  
Sbjct: 662  --YLEVQPVGNNEFLIGKGEVKSVEELREINRKIYLLGKKYNKLIVATGDVHFLDPWDDI 719

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
               +LMA          DR +        +       +     A E  ++   + + +++
Sbjct: 720  YRKILMA---GKGYKDADR-QPPLYFKTTDEMLKEFEYLGEEVAKEIVIDNPNKIADLVE 775

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               PI         +      E ELR   +                  +  + RLD ELN
Sbjct: 776  EVKPIPDGTFPPVIEG----AEEELRRLTLDKAHEIYGDPL------PEIVQNRLDRELN 825

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------- 399
             I    ++  ++I    +  + K+   VG  RGS   S+ A    IT+++PL        
Sbjct: 826  SIINNGYAVMYIIAQKLVSKSLKDGYLVG-SRGSVGSSLVATMSGITEVNPLPPHYVCPN 884

Query: 400  ----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQD 425
                                              F + FE FL  +    PD D++F  +
Sbjct: 885  CKYSEFITDGSYGCGVDMPDKTCPHCGTLMRKDGFDIPFEVFLGFEGDKEPDIDLNFSGE 944

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +    +Y +  +G   V +  T G+L  K A   V +  +                   
Sbjct: 945  YQPIAHKYTEELFGKGHVFRAGTIGTLADKTAYGYVKKYFE------------------- 985

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLV 543
                            R        +  ++    G+ R    H  GI++  +   +    
Sbjct: 986  ---------------ERNLIVHKSEIKRLTVGCTGVKRTTGQHPGGIMVVPKDKSIYDFT 1030

Query: 544  PMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            P+     ++    +T           L+K D LG    T+++   D       ++ L   
Sbjct: 1031 PIQHPADAEDTDVITTHFDYHSISGRLLKLDILGHDDPTVIRMLEDLTGINAREIPLDDK 1090

Query: 602  PFDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                  T           L T  GTLG+ +  +  +RQ L   +P    +++ +  L   
Sbjct: 1091 KTMSLFTSVEALGIDPEELNTPVGTLGLPEFGTKFVRQMLIDTRPTTFAELVRISGLSHG 1150

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                         N ++ I      +  ++     +++Y         +  G     +  
Sbjct: 1151 -------TDVWLNNAQDIIREGIATLKEVISTRDDIMLYL--------ISKGMDKKLSFK 1195

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K      ++          K+G+      +  ++      Y F K+HA AY ++
Sbjct: 1196 IMENVRKGKGVTQEEI-----EEMRKHGVPNWFIESCQKI-----KYMFPKAHAVAYVIM 1245

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQDARQFNIQIMPPS--- 820
            +++ A+ K HYP  F A   T+  D+          + IK   ++         P     
Sbjct: 1246 AFRIAYFKVHYPEAFYATYFTVRADDFNLDIVLKGKDSIKNAIKEIEAKGNNASPKEKSL 1305

Query: 821  ----------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                                    +  V F + +  +   L +++GVG   A+ I +   
Sbjct: 1306 LTVLEVALEMYLRGFKFINVDLYKSDAVKFLITEEGLLPPLNSLEGVGIQAAKTIAQERE 1365

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            +  F S+EDF +R    K+++ V+E L   G L
Sbjct: 1366 NGKFLSVEDFRNRT---KVSKTVIEILKQHGCL 1395



 Score = 84.5 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 36/88 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S   ++ + A     AIAITD   + +  E  + +   G++ I 
Sbjct: 309 VELHLHTQMSSMDAVASATEVIKRAAKWGHKAIAITDHAVVQAFPEAMEASSKYGVKVIY 368

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
           G +  +       +T   +       ++
Sbjct: 369 GVEGYLVDDGVPIVTGDTEATLEDEFTV 396


>gi|229168557|ref|ZP_04296280.1| DNA polymerase III polC-type [Bacillus cereus AH621]
 gi|228614963|gb|EEK72065.1| DNA polymerase III polC-type [Bacillus cereus AH621]
          Length = 1433

 Score =  220 bits (561), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 152/923 (16%), Positives = 293/923 (31%), Gaps = 187/923 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586  FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
             L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645  LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190  RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697  LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAIYRKILVSSQGGA-N 755

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                           N       F    +A E  V    + + ++    P+       + 
Sbjct: 756  PLNRHSLPPVHFRTTNEMLDCFSFLGEDKAKEIVVTNTNKIASLIGDVRPVKDDLYTPKI 815

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            +      ++E R+ +           +I      +    RL+ EL  I    F+  +LI 
Sbjct: 816  EG----ADDETRDMSYVMAR------SIYGDELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A  + IT+++PL                      
Sbjct: 866  HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  + +     Y +  +G
Sbjct: 925  GFDLPDKECPTCNVPYVKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPRAHNYTKLLFG 984

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V +     ++   R  +                      
Sbjct: 985  EDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE---------------------- 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                       +  +     G+ R    H  GI+       +    P+     S   +  
Sbjct: 1022 -----------IDRLVAGCTGVKRTTGQHPGGIIVVPDYMDIFDFSPIQFPADSIGAEWR 1070

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++   D                + +   P    
Sbjct: 1071 TTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSGPESLG 1129

Query: 607  ETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             T   +  K    GI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1130 VTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLG 1182

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N  E I +    +  ++     +++Y         +  G   S A  +  ++ K      
Sbjct: 1183 NANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGLDPSLAFKIMESVRKGKGVPE 1234

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +     +      N +      +  ++      Y F K+HAAAY +++ + A+ K H+ +
Sbjct: 1235 E-----WEEEMRNNNVPGWYIDSCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHFAL 1284

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F AA  T+  D+ +                                  + +   +  + 
Sbjct: 1285 LFYAAYFTVRADDFDVEAMAKGSASIRVKIDEIAQKGLDAAPKEKSLLTVLEMTLEMCER 1344

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +      +F +  + +     A+ G+GT  A  I+EA  +  F S ED   R
Sbjct: 1345 GYSFQKVDLYRSHATEFIIDGDTLIPPFNAVPGLGTNAAFSIVEARKNGDFLSKEDLQQR 1404

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ ++E L   G L   
Sbjct: 1405 ---SKVSKTIIEYLDGQGCLGDL 1424



 Score = 74.8 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S++ ++ +       AIA+TD     S  E       AG++ + 
Sbjct: 332 VELHLHTPMSQMDAVTSVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVLY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 421


>gi|331001986|ref|ZP_08325506.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330411782|gb|EGG91187.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 1480

 Score =  220 bits (561), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 160/951 (16%), Positives = 306/951 (32%), Gaps = 209/951 (21%)

Query: 56   LEFSQKACAAGI-QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            +EF ++    GI +     ++      +L  TN           +++L     G   L +
Sbjct: 612  VEFIKRLKDKGISKL---SEVA-----SLGETNADIVKKTKYNHVIILAKNDIGRINLYK 663

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L+S  ++ D   +  RI  S L ++  EGLI+ +    G + +A   +++     R+++F
Sbjct: 664  LISLSHI-DYFNKRPRIPKSILAKM-REGLIIGSACEQGEVYKALLNDATDDELNRIVSF 721

Query: 175  KKLFGDRLYVNLQR---------------HRGYD-RYRESQVVQLAYTHELPLVATNNSL 218
                    Y+ +Q                H   D +    ++V+L   +E P+VAT +  
Sbjct: 722  YD------YLEIQPIANNMFLIEDEQNDIHSIEDLQEINKRIVELGNVYEKPVVATCDVH 775

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            FL+ ED E +  ++        +    P       L  R+    +        E   E+ 
Sbjct: 776  FLNPED-EIYRRIIFYGKGYKDADTQPP-------LYLRTTREMLDEFEYLGTEKAYEVV 827

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
               S ++     ++      +C  + +  + +L N        +  +         +   
Sbjct: 828  VTNSRMIADMVEVISPVRPDKCPPVIENSDEDLTNACYKKAYEQYGE------VLPKIVE 881

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             RL  ELN I    F+  ++I    ++ + ++   VG  RGS   S  AY   IT+++PL
Sbjct: 882  DRLKKELNSIISNGFAVMYIIAKKLVEKSNEDGYLVG-SRGSVGSSFAAYTSGITEVNPL 940

Query: 399  R--------------------------------------------FSLLFERFLNPDRMS 414
                                                         F + FE FL      
Sbjct: 941  PAHYYCDCKYVDFDSPEVKAFAGMAGCDMPDKICPKCGRKLKKDGFDIPFETFLGFKGDK 1000

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D++F  + +     Y +  +G     +  T G+L  K A   V             
Sbjct: 1001 EPDIDLNFSGEYQPNAHEYTEVIFGKGYTYRAGTVGTLANKTAYGYV------------- 1047

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV- 533
                               D +  +           +  ++   EG+ R    H  GI+ 
Sbjct: 1048 --------------KHYFDDKNESKR-------KCEINRLAVGCEGVRRTTGQHPGGIIV 1086

Query: 534  -IGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ------- 583
                  +    P+ R         +T           L+K D LG +  T+++       
Sbjct: 1087 LPHGEEIYTFTPVQRPANDMTTKTITTHFDYHAIDHNLLKLDILGHQDPTMIRMLQDLTG 1146

Query: 584  ----KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
                K +   ++  + +  +           L    G LG+ +  +    Q L   +P  
Sbjct: 1147 IDPVKDIPLDSKETMSLFQNTSALGIEPKDILDCPLGALGVPEFGTDFAMQMLIDTKPQG 1206

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
            + D++ +      G      V+                +    K T    I     + I 
Sbjct: 1207 LSDLVRI-----AGLAHGTDVWLGNAQT----------LILEGKATIRTAICTRDDIMIY 1251

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
             +  G    E+  +  ++ K      +     +     + G+      +  ++      Y
Sbjct: 1252 LIEQGLDEGESFKIMESVRKGKGLTEE-----WEKHMEEKGVPDWYIWSCKKI-----KY 1301

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK------------------ 801
             F K+HAAAY +++++ A+ K  YP+ +  A  T+                         
Sbjct: 1302 MFPKAHAAAYVMMAWRIAYCKIFYPLAYYTAYFTIRATGFNYSLMCMGKDKLEFNIAQYK 1361

Query: 802  --------------IKKFCQDARQFNIQIMPPSVNT-PCVDFKV-GDNRIYYSLAAIKGV 845
                            +  Q+      +     +       F++  D +I  SL++I+G+
Sbjct: 1362 KNPDTTAKYADTLRDMRIAQEMYARGFEFAKIDLFKVHPTKFQIMEDGKIMPSLSSIEGL 1421

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            G T A  I+ A+   PF S +DF SR    K+ +   E L      D    
Sbjct: 1422 GETAASSIVNATKAGPFISKDDFMSRA---KVGKSTCELL------DSLNL 1463



 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-AAGIQPI 70
           V L  H+  S  +G  S ++I+++       AIAITD  N+     F++ +      + I
Sbjct: 373 VELHCHTKMSDFDGVSSASDIINQAKNWGMDAIAITDHGNIQG---FTEASHVKNPPKII 429

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVP 97
            G +  +       +TN          
Sbjct: 430 YGVEGYLVDDLKELVTNPMDKTLDDGF 456


>gi|295094742|emb|CBK83833.1| DNA polymerase III catalytic subunit, PolC type [Coprococcus sp.
            ART55/1]
          Length = 1603

 Score =  220 bits (560), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 145/919 (15%), Positives = 304/919 (33%), Gaps = 143/919 (15%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
             +D  + L  T+            ++L     G   L  L+S  +L     +  R+ +S 
Sbjct: 716  TMDDLNVLGSTSPDAIKKDKTYHGIILAKNEIGRVNLYRLISESHLT-YFARRPRMPMSL 774

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY 195
            + +   EGLI+ +   +G +  A   ++S    + ++     F    Y+ +Q     +  
Sbjct: 775  INKY-REGLIIGSACEAGELFCAIVDDASD---EEIVRLVNWFD---YLEIQPLGNNEFM 827

Query: 196  ---------------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                              ++V+L      P+VAT +  FL  EDY       A+   +  
Sbjct: 828  TRDTRNPKTMDDLIGYNKRIVELGEMFNKPVVATCDVHFLDPEDYIYR----AIIMKSKG 883

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                  +                +    +A E  +      + +++   P+ P       
Sbjct: 884  FDDADMQPPLYFRTTEEMLAEFQYLGSDKAKEVVITNTNMIADMIERIEPVRPDKAPPII 943

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
            ++  +     L +                        ++RLD EL+ I    F+  ++I 
Sbjct: 944  ENSDQT----LTDICYTKAHEIYGPDL------PPQVQERLDRELHSIISNGFAVMYIIA 993

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               +  +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 994  QKLVWDSNDHGYLVG-SRGSVGSSFVATMAGITEVNPLSAHYICPKCHFVDFDSELVKSY 1052

Query: 400  ------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                      + FE FL  +    PD D++F  + + +   Y +
Sbjct: 1053 SGMSGCDMPDRDCPNCGTPLIKEGHDIPFETFLGFNGDKEPDIDLNFSGEYQSKAHAYTE 1112

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G  +  +  T G +  K A   V    +  +S+ + + +   +      + +   ++
Sbjct: 1113 VLFGKGKAFKAGTVGGVAEKTAFGYVYNYFK-DHSKEELMAEAKASGMDEKSAKKYAEEN 1171

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS-- 551
            +   + R     +      +    G+ R    H  G++       +    P+        
Sbjct: 1172 ATVTKRRCEMERL------ALGCTGVRRTTGQHPGGMIVLPRHEEIYSFTPIQHPANDVT 1225

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
               +T           L+K D LG    T++++  D           + I  DD +   L
Sbjct: 1226 SDIITSHFEYHSIDHNLLKLDILGHDDPTMIRRLEDLTGLDA-----TKIRLDDKDVMEL 1280

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
              +  +LGI   + +G+     G+     +  + ++   +P    ++V      +G +  
Sbjct: 1281 FHSTKSLGITPEDINGIPLGSLGVPEFGTDFAMQMLIDAKPTCFSDLVRIAGLAHGTDVW 1340

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEEMDKQKE 730
            +     +    K T    I     + +  +  G     A  +   + K I  +    + +
Sbjct: 1341 LGNAQELIKSGKCTISTAICCRDDIMVYLIHMGLDAGLAFNIMEKVRKGIVAKGKCDKWD 1400

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
             + +  + +G+      +  ++      Y F K+HAAAY +++++ AW K +YP+E+  A
Sbjct: 1401 DWKAEMAAHGVPDWYVWSCQKI-----KYMFPKAHAAAYVMMAWRIAWFKVNYPLEYYTA 1455

Query: 791  SMTLEMDNVEKIKKFCQ----------------------------------DARQFNIQI 816
              ++  D+                                           +        
Sbjct: 1456 FFSIRADDFSYEMMCFGKERVLFHINEISKVDKNKRSAKDEGKLKDLKIVLEMYARGYDF 1515

Query: 817  MPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            +P  +     D F++ D +I  S A+I+G+G   A+ + +A+   PF S E+   R    
Sbjct: 1516 VPIDIYKAKADRFQIIDGKIMPSFASIEGMGEKAAQQLYDAAQKGPFLSKEEINERA--- 1572

Query: 876  KLNRRVLESLVFAGALDCF 894
            K+ +  +E +   G LD  
Sbjct: 1573 KIGKGTIEKMSELGILDGM 1591



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 1/87 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-SQKACAAGIQPI 70
           V L +H+  S ++  + +  I+ + +    PAIAITD   + +       K      + I
Sbjct: 461 VELHMHTKMSEMDSVVDIETIVKRASDWGHPAIAITDHGVVQAFPIANHTKGLRKDFKII 520

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVP 97
            G +          + N       +  
Sbjct: 521 YGVEGYFVDDLKDLVKNSRNQSLDSEY 547


>gi|283798089|ref|ZP_06347242.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
 gi|291074233|gb|EFE11597.1| DNA polymerase III, alpha subunit [Clostridium sp. M62/1]
          Length = 1538

 Score =  220 bits (560), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 153/947 (16%), Positives = 284/947 (29%), Gaps = 187/947 (19%)

Query: 53   FSA-----LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
              A     ++F +   + GI+       ++D  +     +           I++L     
Sbjct: 661  AGATAEIFVKFVEMLKSRGIE-------NLDELNEQSRMSVETIRKMPTNHIIILAKNDV 713

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            G   L  LVS   L+    +  RI  S + +   EGLI+ +   +G + +A      +  
Sbjct: 714  GRINLYRLVSDSNLV-YYAKRPRIPKSQILKY-REGLIIGSACEAGELYQALLRGVPEAE 771

Query: 168  EKRLLTFKKLFGDRLYVNLQRHRGY-----DRY-----------RESQVVQLAYTHELPL 211
              ++++F        Y+ +Q          D                ++V+L      P+
Sbjct: 772  INKIVSFYD------YLEIQPLGNNAFMLRDEKSTVKTEEDLKDLNRKIVELGERFNKPV 825

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
             AT +  FL  ED E +  ++             P          R           E +
Sbjct: 826  CATCDVHFLDPED-EVYRRIIMAGKGFKDCDDQAPLYLRTTEEMLREFEYLGSDKAEEVV 884

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
                         +             +C  +    +  LRN           +      
Sbjct: 885  ITNTRKIAAMCERI-------SPVRPDKCPPVIPNSDEMLRNICYNRAHEMYGEDL---- 933

Query: 332  YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
               +   +RL+ ELN I    F+  ++I    +  + ++   VG  RGS   S  A    
Sbjct: 934  --PKIVVERLERELNSIISNGFAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFVATMSG 990

Query: 392  ITDIDPLR---------------------------------------------FSLLFER 406
            IT+++PL                                              F + FE 
Sbjct: 991  ITEVNPLSPHYYCTNCHFYDFDSEEVKKFSGMAGCDMPDRLCPVCGKPLKKDGFDIPFET 1050

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL       PD D++F  + +     Y +  +G  +  +  T G+L  K A   V +  +
Sbjct: 1051 FLGFKGDKEPDIDLNFSGEYQSRAHDYTEVIFGKGQTFRAGTIGTLADKTAFGYVKKYYE 1110

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
                                               R        +  I     G+ R   
Sbjct: 1111 ----------------------------------ERGQRKRACEINRIVTGCVGVRRTTG 1136

Query: 527  THAAGIV--IGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
             H  GI+       +    P+           +T           L+K D LG    T++
Sbjct: 1137 QHPGGIIVLPHGEEIYSFTPVQHPADDMTSKTITTHFDYHSIDHNLLKLDILGHDDPTMI 1196

Query: 583  QKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            +   D      VK        D  E   L  +   LGI   +  G         P+   D
Sbjct: 1197 RMLQDLTGLDPVKDIP----LDCKEVMSLFQSTEALGITP-DDIGGCPLGALGVPEFGTD 1251

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH-PLIDPMLKETQGVIIYQEQVMQIAQL 701
                + L       + +V          +   +   +    K T    I     + +  +
Sbjct: 1252 FAMQMLLDTKPKYFSDLVRIAGLAHGTDVWLGNAQTLIQEGKATIQTAICTRDDIMVYLI 1311

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
              G     +  +  ++ K    + +     +    + +G+      +  ++      Y F
Sbjct: 1312 SRGLEEGLSFTIMESVRKGKGLKPE-----WEEEMTAHGVPDWYIWSCKKI-----KYMF 1361

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK-------------------- 801
             K+HAAAY +++++ A+ K  YP+ + AA  ++                           
Sbjct: 1362 PKAHAAAYVMMAWRIAYCKVFYPLAYYAAFFSIRASGFSYELMCQGREKLEYHLADYKKR 1421

Query: 802  -------------IKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGT 847
                           +  Q+      + MP  +      +F++ D ++  SL++I G+G 
Sbjct: 1422 LDTLSKKEQDTLRDMRIVQEMYARGFEFMPIDIYRASARNFQIIDGKLMPSLSSIDGLGE 1481

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              A  I+ A+ D PF S EDF +R    K+ + V + +   G L   
Sbjct: 1482 KAADGIVFAAEDGPFLSKEDFINR---SKVTKTVADLMADLGLLKGL 1525



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 2/97 (2%)

Query: 3   QYLEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-SQ 60
           + ++ SP   V L  H+  S ++G   + +I+ +       AIA+TD   + +  +    
Sbjct: 417 KRMDNSPVKRVELHCHTKMSDMDGVSEVKDIIKRAKKWGMDAIAVTDHGCVQAFPDANHA 476

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
                G + + G +  +         +          
Sbjct: 477 VEKGDGFKVLYGVEGYLVDDLKQLAEDSRGQSLDHTC 513


>gi|23099048|ref|NP_692514.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus iheyensis
            HTE831]
 gi|32469727|sp|Q8EQU6|DPO3_OCEIH RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|22777276|dbj|BAC13549.1| DNA-directed DNA polymerase III alpha chain [Oceanobacillus iheyensis
            HTE831]
          Length = 1428

 Score =  220 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 159/927 (17%), Positives = 299/927 (32%), Gaps = 192/927 (20%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++   ++ N  M               L+  T EG + L +LVSR ++ D   +  R+  
Sbjct: 581  EISNHLELNNHMGENNAYQRSRPYHCTLIAQTEEGLKNLYKLVSRAHI-DFFYRVPRLPR 639

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR----- 188
            S LQ+   EG+++ T    G +       S + AE+    +        Y+ +Q      
Sbjct: 640  SVLQK-HREGILVGTACDKGEVFETMMQKSEEEAEQVADFYD-------YIEVQPPENYT 691

Query: 189  HRGYDR---------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            H                  ++V L    +  +VAT N  +L E D +   +L+       
Sbjct: 692  HLIEKDLVQNESQILDILRKLVNLGDKMKKTVVATGNVHYLHEHDKQYRQILIGSQAGNP 751

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +S+                     F    +A E  V+  ++ +  ++  +P+        
Sbjct: 752  LSR--HKLPDTPFRTTTEMINCFHFLGEKKANEIVVDNTQKLTDSIEEISPVKDGLFTPN 809

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +      E E+R+      +    +         Q    RL+ EL  I    F+  +LI
Sbjct: 810  IEG----AEQEMRDLCYNKAKEVYGEPV------PQIVVDRLEKELESIIGNGFAVIYLI 859

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------RFSLLFERFLN---- 409
                ++ +  +   VG  RGS   S  A    IT+++PL      +     E F +    
Sbjct: 860  SQKLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLVPHYVCKHCHHHEFFTDGSVA 918

Query: 410  -------------------------------PDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
                                                +PD D++F  D +     Y +  +
Sbjct: 919  SGFDLPDKDCPGCGKGLTKDGQDIPFETFLGFKGDKVPDIDLNFSGDYQPRAHNYTKELF 978

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G + V +  T G++  K A   V                       +    Q +  ++  
Sbjct: 979  GIDNVYRAGTIGTVAEKTAYGYVK---------------------GYASDNQFVYKNAEV 1017

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DL 553
                             Q   G+ R    H  GI+    D+ +    P+         + 
Sbjct: 1018 DRLV-------------QGCTGVKRTTGQHPGGIIVVPSDKEIYDFTPIQFPADDRNSEW 1064

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY---- 609
              T F+   I    L+K D LG    T+++   D         ++     +  + +    
Sbjct: 1065 RTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG--MDPKNIPTDDEEVMKIFSGTE 1121

Query: 610  -------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
                    +    GTLG+ +  +  +RQ LE  +P    +++ +  L             
Sbjct: 1122 SLGVTPEQINCKTGTLGVPEFGTKFVRQMLEDTKPKTFAELLIISGLSHG-------TDV 1174

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
               N +E I      +  ++     +++Y         +  G   S A  +   + K   
Sbjct: 1175 WLGNAQELINDGICQLPDVIGCRDDIMVYL--------MHKGLDPSMAFTIMEFVRKGKG 1226

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             + +     +I    K+ +      +  ++      Y F K+HAAAY +++ + A+ K H
Sbjct: 1227 LKDE-----WIDEMKKHAVPDWYIESCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVH 1276

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQ---------------------------------DA 809
            +P+ F AA  T+  D+ E                                        + 
Sbjct: 1277 HPILFYAAYFTVRADDFELDTMIKGSDAIRKRIEEITVKGNDASPKEKNLLTVLEISLEM 1336

Query: 810  RQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
             +         +      DF V  + +     A+ G+GT  A +I++A  +  F S ED 
Sbjct: 1337 CERGFSFKKVDLYQSSATDFIVEGDSLLPPFNAVDGLGTNAALNIVKAREEGEFLSKEDL 1396

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCFG 895
              R    K+++ VLE L   G L+   
Sbjct: 1397 RER---SKISKTVLEYLDNHGCLEGME 1420



 Score = 91.0 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++  +S   ++++ A     AIAITD   +    +        G++ + 
Sbjct: 328 VELHTHTTMSQMDAVVSPEALVEQAAKWGHKAIAITDHAGVQGFPDAHNAGKKHGVKVLY 387

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 388 GVEANLVDDGVPIAYNEADRNLYEDTFVVF 417


>gi|327441015|dbj|BAK17380.1| DNA polymerase III, alpha subunit [Solibacillus silvestris StLB046]
          Length = 1443

 Score =  220 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 155/948 (16%), Positives = 303/948 (31%), Gaps = 207/948 (21%)

Query: 56   LEFSQKACAAGIQ-PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L   ++A   GI+  I         + N  +  +            +L     G + L +
Sbjct: 585  LHLLKQAADLGIKNLI---------EMNDHVGGEEGYKQSRPSHCTVLAVDDAGLKNLFK 635

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L+S  +      +  RI  S LQ++  +GLI+ +G S+G +       + + AE+    +
Sbjct: 636  LISISHTET-FYRVPRIRRSDLQKL-RQGLIVGSGCSNGELFETMMNKTQEEAERIAKFY 693

Query: 175  KKLFGDRLYVNLQR-------------HRG-YDRYRESQVVQLAYTHELPLVATNNSLFL 220
                    Y+ +               H          ++V+L     LP+VAT N  +L
Sbjct: 694  D-------YLEVMPKPVYSPLVDGGTVHDEWALEDIIRRIVKLGKKLNLPVVATGNVHYL 746

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
             E D +   +L+           +     P   +  R+    +        +   EI   
Sbjct: 747  HETDAKFRQILVGSMGG-----ANPLNRNPLPKVHFRTTDEMLKEFDFLGPDLAKEIVVT 801

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +  +      +    +       +  ++E+ N           +         +  + R
Sbjct: 802  NTQRVADMIGHVKPIKDDLYTPKIEGSDDEVTNLTYEMAHSIYGENL------PEIVQAR 855

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            +D EL  I    F   +LI A  ++ +  +   VG  RGS   S+ A  + IT+++PL  
Sbjct: 856  IDKELKSILGHGFGVIYLISAKLVKKSLADGYLVG-SRGSVGSSLVATFMEITEVNPLPP 914

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL      +PD D
Sbjct: 915  HYVCPNCKHSEFIADGSVASGYDLPNKQCPECGAPFKKDGQDIPFETFLGFKGDKVPDID 974

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  + + +   Y +  +G + V +  T G++  K A   V +          R  +  
Sbjct: 975  LNFSGEYQPQAHNYTKVLFGEDYVFRAGTIGTVAEKTAYGYV-KGYGSDNGITYRNAE-- 1031

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDR 537
                                           +  + Q   G+ R    H  GI  V    
Sbjct: 1032 -------------------------------VDRLVQGCTGVKRTTGQHPGGIIVVPDYM 1060

Query: 538  PLSQLVPMYRDV---RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+        S+   T F+   I        + L L  L     ++  + Q   
Sbjct: 1061 DIYDFSPVQFPADAQDSEWKTTHFDFHSIHD------NILKLDILGHDDPTVIRMLQDLS 1114

Query: 595  KVDLSLIPFDDHETYHLLTTKG--------------TLGIFQLESSGMRQALEGMQPDCI 640
             +D   IP DD     + ++                TLGI +  +  +RQ LE  +P   
Sbjct: 1115 GIDPKTIPTDDPIVMKIFSSTESLGVTEKQIGTKTGTLGIPEFGTKFVRQMLEETKPSTF 1174

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
             +++ +  L                N +E I     ++  ++     +++Y         
Sbjct: 1175 SELVQISGLSHG-------TDVWLGNAQELIKDGTCVLKEVIGCRDDIMVYL-------- 1219

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            +      S A  +  ++ K      +       +      + +    +  ++      Y 
Sbjct: 1220 IYQDLEPSFAFKIMESVRKGKGLTDE-----MEAEMRAKKVPEWYIDSCKKI-----KYM 1269

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI------------------ 802
            F K+HAAAY +++ + AW K H+P+ + AA  T+   + + I                  
Sbjct: 1270 FPKAHAAAYVLMAVRIAWFKVHHPILYYAAYFTVRASDFDLIAMTQGSVMIRKKIDEINM 1329

Query: 803  ---------------KKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGVG 846
                            +   +  +  +      +      +F +  N +     AI G+G
Sbjct: 1330 KGLDAAPKEKSLLTVMELALEMCERGMSFKKVDLYRSHASEFIIEGNSLIPPFDAIPGLG 1389

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            T  A+ I+EA  +  F S ED   R    ++++ ++E +   G L+  
Sbjct: 1390 TNVAKQIVEARKNGEFLSKEDLQQR---GRVSKTLIEYMDELGCLEGM 1434



 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 55/380 (14%), Positives = 112/380 (29%), Gaps = 53/380 (13%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S++ ++ + A    PAIA+TD   + +  E        GI+ I 
Sbjct: 343 VELHLHTPMSQMDAMTSVDKLVAQAAKWGHPAIAVTDHAVVQAFPEAYAAGKKNGIKVIY 402

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G + ++       + +           IV  V T  G+  + + +  +  +      V  
Sbjct: 403 GVEANLVDDGKPIVYDPIDVDLEDATYIVFDVET-TGFSNVYDTIIELAAVKIKNGQVID 461

Query: 132 CLSWLQEIGTEG---LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR------- 181
                     +    +I LT  +   +  A            +  F    GD        
Sbjct: 462 TFERFSNPHRKLTAKIIELTHITDDMLVNA------PELSDVIREFHDFIGDGVVVAHNA 515

Query: 182 ------LY-------VNLQRHRGYDRYRESQVVQ----------LAYTHELPLVATNNSL 218
                 LY       + + RH G D    S++V           L   + + L   + ++
Sbjct: 516 AFDLGFLYVAYKNAGIEV-RHPGIDTVELSRLVNPGQKSHNLKTLTKKYNIELTQHHRAI 574

Query: 219 FLSEEDYE--AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
           + +E   E   H +  A         +    V               +     +    + 
Sbjct: 575 YDTEATGELFLHLLKQAADLGIKNLIEMNDHVGG----------EEGYKQSRPSHCTVLA 624

Query: 277 IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
           +       L     I           I++ +  +LR   + G      +         Q+
Sbjct: 625 VDDAGLKNLFKLISISHTETFYRVPRIRRSDLQKLRQGLIVGSGCSNGELFETMMNKTQE 684

Query: 337 YRQRLDFELNVIARMKFSGY 356
             +R+    + +  M    Y
Sbjct: 685 EAERIAKFYDYLEVMPKPVY 704


>gi|256750786|ref|ZP_05491671.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
            CCSD1]
 gi|256750369|gb|EEU63388.1| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus
            CCSD1]
          Length = 1407

 Score =  220 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 158/933 (16%), Positives = 305/933 (32%), Gaps = 195/933 (20%)

Query: 67   IQPI-----IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
            I+ I     +G +  +   + +   ++       V  + +LV   +G + L E++S+  L
Sbjct: 550  IKTIDRLKELGVE-KVKDINAILKESEVDIRKLPVYHVTILVKDQKGLRNLYEIISKSNL 608

Query: 122  LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLFGD 180
             +   ++ R+  S L  +  EGLI+ +    G + RA   N  +   E  +  +      
Sbjct: 609  -EYFHRTPRLPKSLLISM-REGLIIGSACEQGEVFRAIVSNLEEKKLENIISFYD----- 661

Query: 181  RLYVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
              Y+ +Q     +              R    ++  L   +   +VAT +  FL   D  
Sbjct: 662  --YLEVQPVGNNEFLIEKGEVKSVEELREINRKIYLLGKKYNKLVVATGDVHFLDPWDDI 719

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
               +LMA          DR +        +       +     A E  ++   + + +++
Sbjct: 720  YRKILMA---GKGYKDADR-QPPLYFKTTDEMLKEFEYLGEEVAKEIVIDNPNKIADLVE 775

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               PI         +      E ELR   +                  +  + RLD ELN
Sbjct: 776  EVKPIPDGTFPPVIEG----AEEELRRLTLDKAHEIYGDPL------PEIVQNRLDRELN 825

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------- 399
             I    ++  ++I    +  + K+   VG  RGS   S+ A    IT+++PL        
Sbjct: 826  SIINNGYAVMYIIAQKLVSKSLKDGYLVG-SRGSVGSSLVATMSGITEVNPLPPHYVCPN 884

Query: 400  ----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQD 425
                                              F + FE FL  +    PD D++F  +
Sbjct: 885  CKYSEFITDGSYGGGVDMPDKACPHCGTLMKKDGFDIPFEVFLGFEGDKEPDIDLNFSGE 944

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +    +Y +  +G   V +  T G+L  K A   V +  +                   
Sbjct: 945  YQPIAHKYTEELFGKGHVFRAGTIGTLADKTAYGYVKKYFE------------------- 985

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLV 543
                            R        +  ++    G+ R    H  GI++  +   +    
Sbjct: 986  ---------------ERNLIVHKSEIKRLTVGCTGVKRTTGQHPGGIMVVPKDKSIYDFT 1030

Query: 544  PMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            P+     ++    +T           L+K D LG    T+++   D       ++ L   
Sbjct: 1031 PIQHPADAEDTDVITTHFDYHSISGRLLKLDILGHDDPTVIRMLEDLTGINAREIPLDDK 1090

Query: 602  PFDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
                  T           L T  GTLG+ +  +  +RQ L   +P    +++ +  L   
Sbjct: 1091 KTMSLFTSVESLEIDPEELNTPVGTLGLPEFGTKFVRQMLIDTRPTTFAELVRISGLSHG 1150

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                         N ++ I      +  ++     +++Y         +  G     +  
Sbjct: 1151 -------TDVWLNNAQDIIREGIATLKEVISTRDDIMLYL--------ISKGMDKKLSFK 1195

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K      ++          K+G+      +  ++      Y F K+HA AY ++
Sbjct: 1196 IMENVRKGKGVTQEEI-----EEMRKHGVPNWFIESCQKI-----KYMFPKAHAVAYVIM 1245

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQDARQFNIQIMPPS--- 820
            +++ A+ K HYP  F A   T+  D+          + IK   ++         P     
Sbjct: 1246 AFRIAYFKVHYPEAFYATYFTVRADDFNLDIVLKGKDSIKNAIKEIEAKGNNASPKEKSL 1305

Query: 821  ----------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                                    +  V F + +  +   L +++GVG   A+ I +   
Sbjct: 1306 LTVLEVALEMYLRGFKFINVDLYKSDAVKFLITEEGLLPPLNSLEGVGIQAAKTIAQERE 1365

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            +  F S+EDF +R    K+++ V+E L   G L
Sbjct: 1366 NGKFLSVEDFRNRT---KVSKTVIEILKQHGCL 1395



 Score = 84.5 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 36/88 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S   ++ + A     AIAITD   + +  E  + +   G++ I 
Sbjct: 309 VELHLHTQMSSMDAVASATEVIKRAAKWGHKAIAITDHAVVQAFPEAMEASSKYGVKVIY 368

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
           G +  +       +T   +       ++
Sbjct: 369 GVEGYLVDDGVPIVTGDTEATLEDEFTV 396


>gi|323701859|ref|ZP_08113529.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
            574]
 gi|323533163|gb|EGB23032.1| DNA polymerase III, alpha subunit [Desulfotomaculum nigrificans DSM
            574]
          Length = 1421

 Score =  220 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 143/906 (15%), Positives = 295/906 (32%), Gaps = 201/906 (22%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + +LV    G + L +L+S  +L     +  RI    L +   EGL++ +   +G I +
Sbjct: 599  HVTILVKDQVGLKNLYQLISLSHLK-YYHRQPRIPRHELIKY-REGLLVGSACEAGEIFQ 656

Query: 158  AFFFN-SSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVVQ 202
            A     S +  E+    +        ++ +Q     +              +    +++ 
Sbjct: 657  ALLSGCSQEELEEMAAFYD-------FLEIQPLGNNEFLLRSGQVGSQEDLKNLNRRIID 709

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
            +     +P+VAT +  FL+ ED E +  ++        +    P                
Sbjct: 710  IGNKLGIPVVATGDVHFLNPED-EIYRRILMAGKGFDDADNQAPLYFKTTDEMLEEFSYL 768

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
              +   + +     +        +          ++    I +  E ++    +      
Sbjct: 769  GEATARQVVITNPRMIADMVQTFK-------PIPDELHPPIIEGAEQQITEMTLRRAREL 821

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                        +  +QR+D EL  I    F+  +LI    ++ +  +   VG  RGS  
Sbjct: 822  YGNPL------PEIVQQRIDKELKSIIGNGFAVLYLIAQKLVKKSLDDGYLVG-SRGSVG 874

Query: 383  GSVTAYALTITDIDPLR-----------------------------------------FS 401
             S+ A    IT+++ L                                            
Sbjct: 875  SSLVANFCGITEVNSLPPHYRCPKCRHSEFVTDGSAGCGADMPDKVCPQCGTKYVKDGHD 934

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            + FE FL  +   +PD D++F  + +    ++++  +G + V +  T G++  K A   V
Sbjct: 935  IPFEVFLGFEGDKVPDIDLNFSGEYQPRAHKFIEELFGKDHVFRAGTIGTIAEKTAFGFV 994

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
                +                                   R        L  +     G+
Sbjct: 995  KNYFE----------------------------------ERNIKKRNAELTRLVLGCAGV 1020

Query: 522  YRHASTHAAG--IVIGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGL 576
             R    H  G  +V  +  +    P+ R       D   T F+   I    L+K D LG 
Sbjct: 1021 KRTTGQHPGGLMVVPSNLDVHMFTPVQRPADDVNSDTITTHFDYHSIHD-SLVKLDILGH 1079

Query: 577  KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQ 622
               T+++     + +    V+   IP DD +T  L ++                T  I +
Sbjct: 1080 DDPTVIR-----MLEDLTGVNAREIPLDDPKTMSLFSSTEALGVTPEEIRSQVGTYAIPE 1134

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
              +  +RQ L   +P    +++ +                   N ++ I S    +   +
Sbjct: 1135 FGTKFVRQMLVDTKPTTFSELVRISGFSHG-------TDVWLNNAQDLIRSGTCKLSEAI 1187

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
                 +++Y         +       +A  +   + K    + +            +G+ 
Sbjct: 1188 SARDDIMVYL--------IYKNLPPKQAFKIMEGVRKGKGVKEED-----AEAMRAHGVP 1234

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-- 800
            +    +  ++      Y F K+HA AY +++++ AW K + P  F AA  T+  D+ +  
Sbjct: 1235 EWYIESCRKI-----KYMFPKAHATAYVMMAFRIAWFKVYRPEAFYAAYFTVRADDFDAE 1289

Query: 801  -------------------------------KIKKFCQDARQFNIQIMPPSVNTPCVD-F 828
                                            I +   +     I+++P ++     + F
Sbjct: 1290 LMVQGPQKLRQTIEAIEEKGNAASTKEKNLLTILEVALEMNCRGIKLLPVNLEKSDANKF 1349

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
             +  + +    A ++GVG   A++I+ A  + PF S+ED  +R    K+++ V+E L   
Sbjct: 1350 LITPDGLLSPFAGLQGVGRAAAQNIVLARENSPFTSVEDLRNRA---KISKTVIEVLKNH 1406

Query: 889  GALDCF 894
            G L+  
Sbjct: 1407 GCLNHL 1412



 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 41/91 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S  +++ + AA   PA+AITD   + +  E    A  +GI+ I 
Sbjct: 322 VELHLHTKMSAMDSVCSAADVIKQAAAWGHPAVAITDHGVVQAFPEAYNAAKKSGIKLIY 381

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           G +  +       + +       T  + V+L
Sbjct: 382 GVEGYLIDDGITTVMHLSDNGKLTDLTYVVL 412


>gi|134299812|ref|YP_001113308.1| DNA polymerase III subunit alpha [Desulfotomaculum reducens MI-1]
 gi|134052512|gb|ABO50483.1| DNA polymerase III catalytic subunit, PolC type [Desulfotomaculum
            reducens MI-1]
          Length = 1426

 Score =  220 bits (559), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 153/905 (16%), Positives = 295/905 (32%), Gaps = 199/905 (21%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + +LV    G + L +L++  +L     +  RI    L +   EGL++ +   +G   +
Sbjct: 604  HVTILVKDEVGLKNLYQLITLSHLR-YFHRQPRIPRRELVKY-REGLLIGSACEAGEFYQ 661

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVVQL 203
            A    +SQ   + + +F        Y+ +Q     +              +    ++V L
Sbjct: 662  ALMAGASQEELEDIASFYD------YLEIQPLGNNEFMIRTGQVNGEEDLKEINRKIVAL 715

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                 +P+VAT +  FL+ ED     +LMA             +                
Sbjct: 716  GSKLGIPVVATGDVHFLNPEDEVYRRILMAG----KGFDDADNQAPLYFKTTEEMLKEFS 771

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            +     A +  V   R  + ++Q   PI         +      E ++ +  +       
Sbjct: 772  YLGRETAFQVVVSNPRNIASMIQAFKPIPDTLHPPYIEG----AEQQITDMTLQRARELY 827

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
             +         +  +QR+D EL  I    F+  +LI    ++ +  +   VG  RGS   
Sbjct: 828  GEPL------PEVVQQRVDKELKSIIGNGFAVLYLIAHKLVKKSLDDGYLVG-SRGSVGS 880

Query: 384  SVTAYALTITDIDPLR-----------------------------------------FSL 402
            S+ A    IT+++PL                                            +
Sbjct: 881  SLVATFTNITEVNPLPPHYRCPNCLNSEFLMDGSAGCGADMPDKNCPKCGTNYIKDGHDI 940

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE FL  D   +PD D++F  D +    +Y +  +G + V +  T G++  K A   V 
Sbjct: 941  PFEVFLGFDGDKVPDIDLNFSGDYQPRAHKYTEELFGKDYVYRAGTIGTIAEKTAFGFVK 1000

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
               +                             +  +                    G+ 
Sbjct: 1001 NYFE---------------------ERNIKKRSAEMKRLV-------------LGCAGVK 1026

Query: 523  RHASTHAAGIVIGDRPLS--QLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R    H  G+++    L      P+ R       D   T F+   I    L+K D LG  
Sbjct: 1027 RTTGQHPGGLMVVPNSLDVHMFTPVQRPADDVKSDTRTTHFDYHSIHD-SLVKLDILGHD 1085

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQL 623
              T+++     + +    V+   IP DD +T  L  +                T  I + 
Sbjct: 1086 DPTVIR-----MLEDLTSVNAREIPLDDPKTMSLFASTDALGVTPEDIRSQVGTYAIPEF 1140

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +RQ L   +P    +++ +                   N ++ I      +   + 
Sbjct: 1141 GTKFVRQMLVDTKPTTFSELVRISGFSHG-------TDVWLNNAQDLIKEGTCKLSEAIS 1193

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
                +++Y         +  G    +A  +   + K    + +             G+ +
Sbjct: 1194 ARDDIMVYL--------IYQGLPPKQAFKIMEGVRKGKGVKEED-----AEAMRSQGVPE 1240

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--- 800
                +  ++      Y F K+HA AY +++++ AW K + P  F AA  T+  D+ +   
Sbjct: 1241 WYIESCRKI-----KYMFPKAHATAYVMMAFRIAWFKVYRPEAFYAAYFTVRADDFDAEL 1295

Query: 801  ------------------------------KIKKFCQDARQFNIQIMPPSVNTPCV-DFK 829
                                           I +   +A    I+I+P ++       F 
Sbjct: 1296 MVSGPNKIKQVIEEIEEKGNAASQKEKNMLTILEVALEANCRGIKILPVNLEKSDATKFL 1355

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +    +      ++GVG + A++I+ A    PF S++D  +R    K+++ V+E L   G
Sbjct: 1356 ITPEGLLSPFGGLQGVGASAAKNIVAAREQAPFTSIDDLRNRA---KISKTVIEVLQNHG 1412

Query: 890  ALDCF 894
             L+  
Sbjct: 1413 CLNNL 1417



 Score = 97.6 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++  +S  + + + AA   PA+AITD   + +  E    A  AGI+ I 
Sbjct: 327 VELHLHTKMSSMDSVMSAVDAVKQAAAWGHPAVAITDHGVVQAFPEAYAAAKKAGIKLIY 386

Query: 72  GCQLD-IDMQDNLKMTNQGKTPFPTVPSIVL 101
           G +   ID      ++ +   P      +++
Sbjct: 387 GVEGYLIDDGIATVVSMKHNVPLQGTEHVII 417


>gi|322382351|ref|ZP_08056258.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
            larvae B-3650]
 gi|321153704|gb|EFX46079.1| DNA polymerase III PolC-like protein [Paenibacillus larvae subsp.
            larvae B-3650]
          Length = 1437

 Score =  219 bits (558), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 144/914 (15%), Positives = 285/914 (31%), Gaps = 166/914 (18%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            + ++   + L                 +      G + L  LVS  +  +   +   I  
Sbjct: 588  EQNLTQLNRLNDHVGKDLRNTRPFHCCIYAKDMVGKKNLYRLVSLSHT-EYFHRVACIPK 646

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----R 188
            S L E+  EGLI+ +G   G    A    S + AE     +         + +Q     R
Sbjct: 647  SKLIEL-REGLIIASGCEKGEFFEAVLNKSMEEAEGIAEFYD-------VLEIQPVDYNR 698

Query: 189  H---------RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            H         +        +++++      P++AT N  +L   D    D+ +       
Sbjct: 699  HLVEKGLVGSKADLEDAVKRIIRIGEKLGKPVIATGNVHYLHPRDKVCRDITINGITGFS 758

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
               KD  +        +       F    +A E  V+     +   +       +     
Sbjct: 759  PL-KDMKKPDAHFRTTSDMLEQFQFLGKEKAYEVVVKNTNELADRFEELELFPDKLFTPI 817

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +      + E+R K     +    +         Q    RL+ EL  I +  FS  +LI
Sbjct: 818  IEG----ADEEIRTKCYNTAKQIYGEDL------PQVIIDRLEKELVPIIKYGFSANYLI 867

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------- 399
                ++ + ++   VG  RGS   SV A  L I++++PL                     
Sbjct: 868  SERLVKKSNEDGYLVG-SRGSVGSSVVAMMLGISEVNPLPPHYICSSCKHSEWFMDGSVP 926

Query: 400  ---------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
                                   + FE FL      +PD D++F  + +     Y +  +
Sbjct: 927  SGFDLPDKECPHCGGKLKGEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPVAHNYTKVLF 986

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G + V +  T G++  K A   V +                            I+     
Sbjct: 987  GEKNVFRAGTIGTVAEKTAFGYVKK---------------YEESLGKKWRNAEISR---- 1027

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL--SQLVPMYRDVRSDLPVT 556
                           ++    G+ R    H  GIV+    +    + P+      D   +
Sbjct: 1028 ---------------LASGCTGVKRSTGQHPGGIVVVPDYIEVDDITPVQFPA--DDTKS 1070

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
            ++     +       + L L  L     ++  + Q    VD   IP +D +   +  +  
Sbjct: 1071 EWKTTHFDYHAFD-ANLLKLDILGHDDPTMMRMLQDLTGVDPLKIPMNDPKVMSIFNSTD 1129

Query: 617  TLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
             LG+   Q+ S      +  M    +  ++           D + +          + + 
Sbjct: 1130 ALGVTPEQIRSPVGTFGVPEMGTKFVRQMLQETQP--SSFADLLQISGLSHGTGVWLGNA 1187

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
              LI   +   + VI  ++ +M      +G     A  +  ++ K      +     +  
Sbjct: 1188 QELIRKGICSIKTVIGCRDDIMLYLIYKAGMDAGLAFKITESVRKGKGLTDE-----WKE 1242

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               K+ +      +   +     +Y F K+HAAAY + + +TA+ K ++P+ F A   ++
Sbjct: 1243 EMKKHNVPDWYIESCERI-----EYMFPKAHAAAYVISAVRTAYYKLYHPIAFYATYFSV 1297

Query: 795  E---------MDNVEKIKKFCQDARQFNIQIMPPS------------------------- 820
                          + I K   +  +   Q +P                           
Sbjct: 1298 RAEDFELDLLCQGYDTILKRLIEIEEKGFQALPKERAMISILEMALEMTARGFSFKPVDL 1357

Query: 821  VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
              +    F +  + +    +A+ G+G   A++I  +     F S+EDF +R    K+++ 
Sbjct: 1358 YRSEANKFIIDGDSLIPPFSAVPGIGENAAKNIAASREGGDFLSIEDFQTRA---KVSKS 1414

Query: 881  VLESLVFAGALDCF 894
            ++E L   G     
Sbjct: 1415 IVELLGQMGCFRGL 1428



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G   +   +   A     AIAITD + +    + ++     G++ I 
Sbjct: 337 VEFHLHTTMSTMDGITPVGEYIKTAAKWGHKAIAITDHSGVQCYPDANKAGKKHGMKVIY 396

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       + N  +        +V 
Sbjct: 397 GLEANVVNDSVPIVENSKEIKLKEATYVVF 426


>gi|254416531|ref|ZP_05030283.1| DNA polymerase III, alpha subunit subfamily, putative [Microcoleus
           chthonoplastes PCC 7420]
 gi|196176735|gb|EDX71747.1| DNA polymerase III, alpha subunit subfamily, putative [Microcoleus
           chthonoplastes PCC 7420]
          Length = 835

 Score =  219 bits (558), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 205/500 (41%), Positives = 298/500 (59%), Gaps = 31/500 (6%)

Query: 246 PRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            R +   YLK+  EM  +F D    E ++  +      +  ++ +  +    I       
Sbjct: 1   MRYSGTEYLKSAEEMAQLFRDHLPDEVIQEAIANTLEVADKVKRYDIMGEPRIPNYPVPK 60

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
               ++ L      GL  R+  G  ++      Y++RL++EL ++ +M FS YFL+V D+
Sbjct: 61  GHSADSYLEEVTWDGLLERM--GCRSRSDIDLVYKERLEYELKMMQQMGFSTYFLVVWDY 118

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           I++A+   IPVGPGRGS AGS+ AY+L IT+IDP+   LLFERFLNP+R SMPD D DFC
Sbjct: 119 IKYARDQKIPVGPGRGSAAGSLVAYSLKITNIDPVHHGLLFERFLNPERKSMPDIDTDFC 178

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            +RRDEVI YV +KYG +RVAQIITF  + +KA L+DV R L +PY + DR+ K+IP   
Sbjct: 179 IERRDEVIEYVTHKYGADRVAQIITFNRMTSKAVLKDVARVLNIPYGESDRMAKMIPVSR 238

Query: 484 AHPVSLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
             P  L+ +  +      FR+A L +P V R L+++ ++EG  +    HAAG+VI   PL
Sbjct: 239 GKPTKLKVMISEKTPTPEFRDAYLNNPEVQRWLDMAIRIEGTNKTFGVHAAGVVISSEPL 298

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV--- 596
            ++VP+         +TQ+ M+ +E  GL+K DFLGLK LT +QK+ + + Q        
Sbjct: 299 DEIVPLQ-VNNEGAVITQYFMEDLESLGLLKMDFLGLKNLTTIQKTAELIRQHQNITLDL 357

Query: 597 -----------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
                            ++  IP D  +TY +L      GIFQLESSGMRQ +  ++P  
Sbjct: 358 DQLPLDERKAFEIVAKGEIKKIPDDIKQTYTVLEKGELEGIFQLESSGMRQVVRELKPSS 417

Query: 640 IEDIIALVSLYRPGPIDN--IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
           IEDI ++++LYRPGP+D   I  + NRK+GKEK+   HPL++P+LKET G + YQEQ+M+
Sbjct: 418 IEDISSILALYRPGPLDAGLIPKFINRKHGKEKVEYQHPLLEPILKETYGTLCYQEQIMK 477

Query: 698 IAQLLSGYSLSEADVLRRAM 717
           +AQ L+GYSL +AD+LRR +
Sbjct: 478 MAQDLAGYSLGQADLLRRCL 497


>gi|302392350|ref|YP_003828170.1| DNA polymerase III catalytic subunit, PolC type [Acetohalobium
            arabaticum DSM 5501]
 gi|302204427|gb|ADL13105.1| DNA polymerase III catalytic subunit, PolC type [Acetohalobium
            arabaticum DSM 5501]
          Length = 1440

 Score =  219 bits (558), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 157/908 (17%), Positives = 299/908 (32%), Gaps = 199/908 (21%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                 V+LV   +G + L +LVS+ ++     +  RI  S L +   EGLI+ +   +G 
Sbjct: 614  RPYHAVILVKNQQGLKNLYKLVSKAHIET-FHRVPRILKSDLLKR-REGLIIGSACEAGQ 671

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQV 200
            + +A      +   + +  F        Y+ +Q                    +    Q+
Sbjct: 672  LYQAIVNGKDESTIREIAEFYD------YLEIQPLGNNQFLIENEQVDSKEKLKEINHQI 725

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
             QL      P+VAT +  FL  ED    ++LM              +    +        
Sbjct: 726  YQLGQKLNKPVVATGDVHFLDPEDKIYREILMEGQ----GFDDAEDQAPLYYRTTEEMLD 781

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
               + +   A E  ++  ++    ++   P+       E +   +E +    NKA     
Sbjct: 782  EFDYFEPEVAKEVVIDNPKQIVEEVEEVKPVPDGLFTPEIEGAVEEVKQMTYNKAR---- 837

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                  +I      +    RL+ EL+ I    F+  +LI    ++ +  +   VG  RGS
Sbjct: 838  ------SIYGDELPELVVNRLEKELDAIIGNGFAVIYLISHKLVKKSLDDGYLVG-SRGS 890

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 891  VGSSLVATMCDITEVNPLPPHYVCPKCKYSEFFTDGSVGIGVDLPDEVCPECGADLIKSG 950

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + FE F+  +   +PD D++F  + + EV RY ++ +G + V +  T  ++  + A  
Sbjct: 951  SDIPFEVFMGFEGDKVPDIDLNFSGEYQPEVHRYTEDLFGEDHVYRAGTISTIADRTAYG 1010

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V   +       DR   L   +    V                                
Sbjct: 1011 FVKGYMD------DRSLTLRKAEVNRLVD----------------------------GCT 1036

Query: 520  GLYRHASTHAAGIVIGDRP--LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G  +    H  G ++  +   +    P+ R       D+  T F+   I    ++K D L
Sbjct: 1037 GARKTTGQHPGGQMVVPQDKEVFDFTPIQRPANDQDSDVLTTHFDYHSI-SGRILKLDIL 1095

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG--------------I 620
            G    T ++     + Q    VD + IP D+ ET  + +    LG              I
Sbjct: 1096 GHDDPTTIR-----MLQDLTGVDPTSIPLDNPETMAIFSKVEPLGVSKEEIGTTVGSLGI 1150

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +S +RQ LE  +P    +++ +  L                N ++ I      +  
Sbjct: 1151 PEFGTSFVRQMLEDTRPTTFAELVRISGLSHG-------TDVWLNNAQDLIEEGTAELSE 1203

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            ++     ++ Y  Q              EA      M        +   E        N 
Sbjct: 1204 VISVRDDIMNYLLQ-----------KGVEASKAFWIMEDVRHG--EGLTEEQEQTMRDND 1250

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            +      +  ++      Y F K+HA AY +++++ A+ K HYP  F     T++  + +
Sbjct: 1251 VPDWYIKSCKKI-----KYMFPKAHAVAYVMMAFRIAFFKVHYPEAFYNTYFTIKSADFD 1305

Query: 801  KIKKFCQ---------------------------------DARQFNIQIMPPSVNTPCVD 827
                                                    +A    I+ +   +     +
Sbjct: 1306 AQIVLQGKDFIKEKIQEIKAKGNDATQKDKNTLTVLEIVIEALVRGIEFVSVDLYDSEAE 1365

Query: 828  -FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             F++ +N +   L  ++G+G + A  I++A  +  F S+ED  +R     +++ V+E + 
Sbjct: 1366 KFQITNNGLRPPLITLQGLGKSAAESIIQAREEGEFSSIEDLKNRTS---ISKTVIEVMK 1422

Query: 887  FAGALDCF 894
              G LD  
Sbjct: 1423 EHGCLDGL 1430



 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 38/90 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++  + L +++++ A  +  A+AITD   + S  E    A    ++ + 
Sbjct: 342 VELHLHTQMSAMDSVVELEDVIERAADWEHQALAITDHGVVQSFPEAYNIADDLDLKLVY 401

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G +  +       + N+          IV 
Sbjct: 402 GLEAYLVDDGEPIVINEADVELEETEYIVF 431


>gi|295396947|ref|ZP_06807069.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563]
 gi|294974800|gb|EFG50505.1| DNA polymerase III PolC [Aerococcus viridans ATCC 11563]
          Length = 1439

 Score =  219 bits (558), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 152/920 (16%), Positives = 298/920 (32%), Gaps = 203/920 (22%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++    + N  +              VLL     G + L +LVS   + D   +  RI  
Sbjct: 591  EIFYHDELNKDVGKGDAYKQGRPFHAVLLAKNQTGLKDLFKLVSASNI-DYYYRVPRIPR 649

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR--- 190
            S L     E L++ +  + G +  A        AEK+   +        Y+ LQ      
Sbjct: 650  SLLSS-HRENLLVGSACAGGEVFEALMQKGKVEAEKKAAFYD-------YLELQPKGVYK 701

Query: 191  -------GYDRYRESQV----VQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHST 238
                     D     ++    +++  +   P+VAT +  +L+EED    ++L+ ++  + 
Sbjct: 702  PLILDELIQDEATLEKIMKDMLEIGESVNKPVVATGDVHYLNEEDKLYREILINSIKSNR 761

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
              +  +    + +  L+  + +         A +  VE +   +  ++   P+  +    
Sbjct: 762  TKNFPEAHFRSTEEMLQEFAFLGEET-----AYQIVVENSNAIADSIEFVEPLKDKLYTP 816

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              +      E EL + +         +         +    RLD EL  I    FS  +L
Sbjct: 817  TIEG----AEQELTDMSFEKAHEIYGK------ELPEIVEARLDKELKSIISNGFSVIYL 866

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
            I    ++ +  +   VG  RGS   S  A    IT+++PL                    
Sbjct: 867  ISQKLVKKSNDDGYIVG-SRGSVGSSFVATMSGITEVNPLAPHYVCPNCHYSHFFTDGSV 925

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL      +PD D++F  + +     Y +  
Sbjct: 926  GSGFDLPDKPCPECGTNLDKDGQDIPFETFLGFKGDKVPDIDLNFSGEYQARAHAYTKVL 985

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G + V +  T G++  K A   V                                 D  
Sbjct: 986  FGDDHVFRAGTIGTVADKTAFGYVL----------------------------GYDQDKN 1017

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---D 552
                +     +      ++   G+ R    H  GI++      +    P+         +
Sbjct: 1018 LNLRKTEKEFL------AKGATGVKRTTGQHPGGIIVIPENMDVYDFTPIQFPADDVESE 1071

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T F+   I    ++K D LG    T+++K      Q    +D + IP DD E Y L 
Sbjct: 1072 WKTTHFDFHSIHD-NVLKLDILGHDDPTMIRK-----LQDLSGIDPTEIPIDDPEVYELF 1125

Query: 613  TTKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
                              TLGI +  +   RQ LE  +P    +++ +  L     +   
Sbjct: 1126 NGTEVLGVTKEQIYSNTGTLGIPEFGTRFTRQMLEATKPSTFAELLQISGLSHGTDVWLG 1185

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
                  +            +  ++     +++Y         +  G   S+A  +   + 
Sbjct: 1186 NAEVLVREKGLP-------LSEVIGCRDDIMVYL--------IHRGLPESDAFQIMEKVR 1230

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K      +       +   +  + +    +  ++      Y F K+HAAAY + + + AW
Sbjct: 1231 KGKGLSEE-----HKAIMREYDVPEWYMDSCEKI-----KYMFPKAHAAAYVLNAMRVAW 1280

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKK---------------------------------F 805
             K  +P+ +  A +++   + + +                                    
Sbjct: 1281 FKVKHPIWYYCAYLSVRASDFDLVSMSNGKESTKAKINEINAKGMEASTKEKQLLTVLEI 1340

Query: 806  CQDARQFNIQIMPPSVNTPCV-DFKVGD-NRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
              +  +    +    +N     +F + D N +     AI G+GT  A+ I+ A  + PF 
Sbjct: 1341 VNEMWERGFTLKMVDINKSHATEFIIEDDNTLIAPFRAIDGLGTNVAKSIVAAREESPFL 1400

Query: 864  SLEDFCSRVDSKKLNRRVLE 883
            S ED  +R    K+++ ++E
Sbjct: 1401 SKEDLQTR---GKVSKSLIE 1417



 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 72/181 (39%), Gaps = 18/181 (9%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH++ S+L+   S+++  ++       AIA+TD   L +  E S  A + G++ I 
Sbjct: 337 VELHVHTNMSMLDATNSISDFTNQAKDWGHTAIAVTDHATLQAYPEASGAAKSTGLKMIY 396

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG----YQRLIELVSRMYLLDQGKQ 127
           G + +I         N           +V  V T  G    Y  +IEL      +     
Sbjct: 397 GVEANIVDDGVPIAYNPDHIELKEATYVVFDVET-TGLSAIYDNIIEL----AAVKMQNG 451

Query: 128 SVRICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
           +V          G   +  +I LTG     I  A   N+    ++ +  F++  GD ++V
Sbjct: 452 NVIDTFEEFINPGRPLSATIIDLTG-----ITDAMLANTRTE-KEVISDFREWVGDAIFV 505

Query: 185 N 185
            
Sbjct: 506 A 506


>gi|307264910|ref|ZP_07546472.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii
            Rt8.B1]
 gi|306920168|gb|EFN50380.1| DNA polymerase III, alpha subunit [Thermoanaerobacter wiegelii
            Rt8.B1]
          Length = 1407

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 157/935 (16%), Positives = 301/935 (32%), Gaps = 196/935 (20%)

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               G++        +   + +   ++       V  + +LV   +G + L E++S+  L 
Sbjct: 557  KELGVK-------KVKDINAILRESEVDIRKLPVYHVTILVKDQKGLRNLYEIISKSNL- 608

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLFGDR 181
            +   ++ RI  S L  +  EGLI+ +    G + RA   N  +   E  +  +       
Sbjct: 609  EYFHRTPRIPKSLLISM-REGLIIGSACEQGEVFRAIVSNLEEKKLENIISFYD------ 661

Query: 182  LYVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
             Y+ +Q     +              R    ++  L   +   +VAT +  FL   D   
Sbjct: 662  -YLEVQPVGNNEFLIEKGEVKSVEELREINRKIYLLGKKYNKLVVATGDVHFLDPWDNIY 720

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
              +LMA          DR +        +       +     A E  ++   + + +++ 
Sbjct: 721  RKILMA---GKGYKDADR-QPPLYFKTTDEMLKEFEYLGEEVAKEIVIDNPNKIADLVEE 776

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              PI         +      E ELR   +                  +  + RLD ELN 
Sbjct: 777  VKPIPDGTFPPVIEG----AEEELRKLTLDKAHEIYGDPL------PEIVQNRLDRELNS 826

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------- 399
            I    ++  ++I    +  + K+   VG  RGS   S+ A    IT+++PL         
Sbjct: 827  IINNGYAVMYIIAQKLVSKSLKDGYLVG-SRGSVGSSLVATMSGITEVNPLPPHYVCPNC 885

Query: 400  ---------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDR 426
                                             F + FE FL  +    PD D++F  + 
Sbjct: 886  KYSEFITDGSYGCGVDMPDKTCPDCGTLMKKDGFDIPFEVFLGFEGDKEPDIDLNFSGEY 945

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            +    +Y +  +G   V +  T G+L  K A   V +  +                    
Sbjct: 946  QPIAHKYTEELFGKGHVFRAGTIGTLADKTAYGYVKKYFE-------------------- 985

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVP 544
                           R        +  ++    G+ R    H  GI++  +   +    P
Sbjct: 986  --------------ERNLIVHKSEIKRLTIGCTGVKRTTGQHPGGIMVVPKDKSIYDFTP 1031

Query: 545  MYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
            +     ++    +T           L+K D LG    T+++   D       ++ L    
Sbjct: 1032 IQHPADAEDTDVITTHFDYHSISGRLLKLDILGHDDPTVIRMLEDLTGVNAREIPLDDKK 1091

Query: 603  FDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                 T           L T  GTLG+ +  +  +RQ L    P    +++ +  L    
Sbjct: 1092 TMSLFTSVEALGIDPEELNTPVGTLGLPEFGTKFVRQMLIDTHPTTFAELVRISGLSHG- 1150

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N ++ I      +  ++     +++Y         +  G     +  +
Sbjct: 1151 ------TDVWLNNAQDIIREGIATLKEVISTRDDIMLYL--------ISKGMDKKLSFKI 1196

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K      ++          K+G+      +  ++      Y F K+HA AY +++
Sbjct: 1197 MENVRKGKGVAPEEI-----EEMKKHGVPNWFIESCQKI-----KYMFPKAHAVAYVIMA 1246

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQDARQFNIQIMPPS---- 820
            ++ A+ K HYP  F A   T+  D+          + IK   ++         P      
Sbjct: 1247 FRIAYFKVHYPEAFYATYFTVRADDFNLDIVLKGKDSIKNAIKEIEAKGNNASPKEKSLL 1306

Query: 821  ---------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                                   +  V F + +  +   L +++GVG   A+ I +   +
Sbjct: 1307 TVLEVALEMYLRGFKFINVDLYKSDAVKFLITEEGLLPPLNSLEGVGIQAAKTIAQEREN 1366

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              F S+EDF +R    K+++ V+E L   G L   
Sbjct: 1367 GKFLSVEDFRNRT---KVSKTVIEILKQYGCLTDL 1398



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 36/88 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S   ++ + A     AIAITD   + +  E  + +   G++ I 
Sbjct: 309 VELHLHTQMSSMDAVASATEVIKRAAKWGHKAIAITDHAVVQAFPEAMEASYKYGVKVIY 368

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
           G +  +       +T   +       ++
Sbjct: 369 GVEGYLVDDGVPIVTGDTEATLEDEFTV 396


>gi|296132882|ref|YP_003640129.1| DNA polymerase III, alpha subunit [Thermincola sp. JR]
 gi|296031460|gb|ADG82228.1| DNA polymerase III, alpha subunit [Thermincola potens JR]
          Length = 1442

 Score =  218 bits (556), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 155/943 (16%), Positives = 296/943 (31%), Gaps = 198/943 (20%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             ++F ++     I           +     +             +V+LV   +G + L +
Sbjct: 586  LIKFLERLAEHNID---------TLGQINSLIGNINIDQLRSHHVVILVKNQQGLKNLYQ 636

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LV+  +L     +  RI  S L +   EGLI+ +   +G + RA   N+ Q   + +  F
Sbjct: 637  LVTDSHLK-YYHRHPRIPKSELIKK-REGLIIGSACEAGELFRALLDNAPQERLEEIAGF 694

Query: 175  KKLFGDRLYVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNSLFL 220
                    Y+ +Q     +              R    ++ +L      P+VAT +  FL
Sbjct: 695  YD------YLEIQPVGNNEFLLREGRVNSYDELRELNRKIFELGRKIGRPVVATGDVHFL 748

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
              ED     VL+A                 +           +  +              
Sbjct: 749  DPEDAVYRAVLLA---------GKGFEDADNQAPLYLKTTEEMLEEFSYLGLENAREVVI 799

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             + +    +    + +  +    + E   E   +       ++    +         +QR
Sbjct: 800  ENPVRIAESIDSIKPMPDDFFPPKIEGAEEQIIELTISTAKKIYGDPL-----PDIVQQR 854

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            +D ELN I    F+  +LI    ++ + ++   VG  RGS   S  A    IT+++PL  
Sbjct: 855  VDKELNSIITNGFAVLYLIAHKLVKKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLPP 913

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL      +PD D
Sbjct: 914  HYICRNCKYSEFVTDGSYGSGADMPDKDCPVCGKPLKKDGHDIPFEVFLGFKGDKVPDID 973

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  + +    ++ +  +G   V +  T G++  K A   V   L+             
Sbjct: 974  LNFSGEYQPRAHKFTEELFGKGYVFRAGTTGTIADKTAFGFVKNYLE------------- 1020

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDR 537
                      + I  ++                  +    G+ R    H  G+  V  D 
Sbjct: 1021 --------ERKIIKRNAEITRL-------------ASGCTGVKRTTGQHPGGVMVVPRDM 1059

Query: 538  PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+          +  T F+   I    ++K D LG    T+++   D       
Sbjct: 1060 DVHDFTPLQFPADDKTSGVITTHFDYHSI-SGRIVKLDILGHDDPTVIKMLEDLTGVDAK 1118

Query: 595  KVDLSLIPFDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
             + L         +           + +  GT GI +  +  +RQ LE  +P    +++ 
Sbjct: 1119 TIPLDEPKVLQLFSGTESLGVTPDDIRSNVGTYGIPEFGTKFVRQMLEDTRPKTFSELVR 1178

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +             V+ N              +      T    I     + +  +  G 
Sbjct: 1179 ISGFSH-----GTDVWLNNAQ----------DLIRSGTCTLSEAISTRDDIMVYLIYKGL 1223

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
              S A  +   + K    + + +         +N + +    +  ++      Y F K+H
Sbjct: 1224 EPSRAFKIMEGVRKGKGVKPEDE-----EYMRENNVPEWYIDSCKKI-----KYMFPKAH 1273

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------------------- 800
            A AY +++++ A+ K +YP  F A   T+  D  +                         
Sbjct: 1274 AVAYVMMAFRIAYFKVYYPEAFYATYFTVRADEFDADIICRGKEAVLNKIREIENKGNEA 1333

Query: 801  --------KIKKFCQDARQFNIQIMPPS-VNTPCVDFKVGDNRIYYSLAAIKGVGTTTAR 851
                     I +   +     I+I P S V +    F + +  +    AA++GVG   AR
Sbjct: 1334 SAKEKNLLTILEVALEMYVRGIKIRPVSLVESTATRFLITEEGLLPPFAALQGVGEAAAR 1393

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             I  A  +  F S+ED  +R    ++++ V+E L   G L   
Sbjct: 1394 SIERARDEAKFTSIEDLRTRA---RISKTVVEVLQNHGCLRNL 1433



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 38/90 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++G   + +++ ++      A+AITD   + +  E  + A  + ++ I 
Sbjct: 344 VELHLHTKMSAMDGLTDVKDLVARLGEWGHAAVAITDHGVVQAFPEAYEAAQKSNVKIIY 403

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G +  +       + N  +        +V 
Sbjct: 404 GIEAYLIEDGAPIIINPREEAVKDATYVVF 433


>gi|315651645|ref|ZP_07904656.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986]
 gi|315486099|gb|EFU76470.1| DNA polymerase III PolC [Eubacterium saburreum DSM 3986]
          Length = 1483

 Score =  218 bits (555), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 156/950 (16%), Positives = 304/950 (32%), Gaps = 207/950 (21%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            +EF ++  A GI         +    +L  TN           +++L     G   L +L
Sbjct: 615  VEFIKRLKAKGIN-------KLSDVASLGETNADIVKKTKYNHVIILAKNDIGRINLYKL 667

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +S  ++ D   +  RI  S L ++  EGLI+ +    G + +A   +++     R+++F 
Sbjct: 668  ISLSHI-DFFNKRPRIPKSILAKM-REGLIIGSACEQGEVYKAILDDATDAELNRIVSFY 725

Query: 176  KLFGDRLYVNLQR---------------HRGYD-RYRESQVVQLAYTHELPLVATNNSLF 219
                   Y+ +Q                H   D +    ++ +L   ++ P+VAT +  F
Sbjct: 726  D------YLEIQPIGNNMFLIDDEQNDIHSKEDLQDINRRIAELGDIYDKPVVATCDVHF 779

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            L+ ED E +  ++        +    P       L  R+    +        E   E+  
Sbjct: 780  LNPED-EIYRRIIFYGKGYKDADIQPP-------LYLRTTKEMLDEFEYLGSEKAYEVVV 831

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
              + ++     ++      +C  + +  + +L          +  +         +    
Sbjct: 832  TNTRMIADMVEVISPVRPDKCPPVIENSDEDLTAACYKKAHEQYGKNL------PKIVED 885

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RL  ELN I    F+  ++I    ++ + ++   VG  RGS   S  AY   IT+++PL 
Sbjct: 886  RLKKELNSIISNGFAVMYIIAKKLVEKSNEDGYLVG-SRGSVGSSFAAYTSGITEVNPLP 944

Query: 400  --------------------------------------------FSLLFERFLNPDRMSM 415
                                                        F + FE FL       
Sbjct: 945  AHYYCDCKYVDFDSPEVKAFAGRAGCDMPDKICPKCGKKLKKDGFDIPFETFLGFKGDKE 1004

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  + +     Y +  +G     +  T G+L  K A   V              
Sbjct: 1005 PDIDLNFSGEYQPNAHAYTEVIFGKGHTYRAGTVGTLANKTAYGYV-------------- 1050

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV-- 533
                              D +  +           +  ++   EG+ R    H  GI+  
Sbjct: 1051 -------------KHYFDDKNENKR-------KCEVNRLATGCEGVRRTTGQHPGGIIVL 1090

Query: 534  IGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ-------- 583
                 +    P+ R         +T           L+K D LG +  T+++        
Sbjct: 1091 PHGEEIYTFTPVQRPANDMTTNIITTHFDYHAIDHNLLKLDILGHQDPTMIRMLQDLTGI 1150

Query: 584  ---KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
               K +   ++  + +  +           L    G LG+ +  +    Q L   +P+ +
Sbjct: 1151 DPVKDIPLDSKETMSLFQNTKALGIEPKDILDCPLGALGVPEFGTDFAMQMLLDTKPEGL 1210

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
             D++ +      G      V+                +    K T    I     + I  
Sbjct: 1211 SDLVRI-----AGLAHGTDVWLGNAQT----------LILEGKATIRTAICTRDDIMIYL 1255

Query: 701  LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
            +  G    E+  +  ++ K      +     ++    + G+      +  ++      Y 
Sbjct: 1256 IEKGLDEGESFKIMESVRKGKGLTDE-----WVEHMEEKGVPDWYIWSCKKI-----KYM 1305

Query: 761  FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK------------------- 801
            F K+HAAAY +++++ A+ K  YP+ +  A  T+                          
Sbjct: 1306 FPKAHAAAYVMMAWRIAYCKIFYPLAYYTAYYTIRATGFNYSLMCMGREKLEYNISEYRK 1365

Query: 802  -------------IKKFCQDARQFNIQIMPPSVNT-PCVDFKV-GDNRIYYSLAAIKGVG 846
                           +  Q+      +     +       F++  + +I  SL++I G+G
Sbjct: 1366 KTDATAKDADTLRDMRIVQEMYARGFEFAKIDLFKVHPTKFQIMDNGKIMPSLSSIDGLG 1425

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             T A  I+ A+   PF S +DF SR    K+ +   E L      D    
Sbjct: 1426 ETAATSIVNATKAGPFISKDDFMSRA---KVGKSTCELL------DSLNL 1466



 Score = 74.8 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 6/88 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP-- 69
           V L  H+  S  +G  S  +I+++       AIAITD  N    ++   +A      P  
Sbjct: 376 VELHCHTKMSDFDGVSSATDIINQAKNWGMDAIAITDHGN----IQAFTEASHVKNPPKI 431

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           I G +  +       ++N          
Sbjct: 432 IYGVEGYLVDDLKELVSNPADKTLDDGF 459


>gi|302668958|ref|YP_003832783.1| DNA polymerase III E DnaE2 [Butyrivibrio proteoclasticus B316]
 gi|302397298|gb|ADL36201.1| DNA polymerase III E DnaE2 [Butyrivibrio proteoclasticus B316]
          Length = 972

 Score =  218 bits (555), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 212/798 (26%), Positives = 336/798 (42%), Gaps = 127/798 (15%)

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             R++     +  M        + + + +       +G GRGSGAGSV AY   IT+++P 
Sbjct: 89   DRIEHLRAHMTEMSIEEMISYIEEDMSY---PGFTIGIGRGSGAGSVVAYVNYITNVEPT 145

Query: 399  RFSLLFERFLNPDRMSMPDFDIDF-----CQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
            ++ LLFERFLNP+R+SMPDFD D          RD VI YV  KYG++ V  I T  +L 
Sbjct: 146  QYDLLFERFLNPERVSMPDFDSDLSKAEAPYGVRDIVIEYVGKKYGYDGVCGICTPSTLA 205

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR---------------- 497
             KAA+ +    L     Q  +  K     P        +  +                  
Sbjct: 206  PKAAVMNTANILVDREFQKKKGFKEGDYIPNSEKDPVWVEINKHYTDLSKAIRADIPEDP 265

Query: 498  -----------------FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR-PL 539
                              +           ++E++  L+G+  +   HAAG++I D   +
Sbjct: 266  GTTFSSEMEDGSTLYESLKMKYAGSKDATEIIELANMLDGVNDNYGKHAAGVIIADNGNV 325

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKA-GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
             +   +  D  S+    Q N    E   GL+K DFLGLKTL ++  +L  + +       
Sbjct: 326  GEYGALMYDDESNGWKIQMNAVECEDTAGLLKMDFLGLKTLNIITMALRLIYENRGIYIN 385

Query: 599  SLIPFDDHETY-HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
                 DD E Y  +  T  T+ +FQ  S+GM+Q L+  +PD  +D+  L + +RPGP+  
Sbjct: 386  VENLPDDPEVYSKIFATGNTVEVFQFSSNGMKQMLKKFKPDKFDDLTLLNATFRPGPMKY 445

Query: 658  IVVYNNRKNGKEKIVSIH---PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            I    ++K+G+    S     P I  +L  T G  +YQEQVM+I Q++  YS+  AD +R
Sbjct: 446  IDPIADKKHGRPVETSAFDKVPQIQELLAPTYGYPVYQEQVMRIFQIMGQYSIGGADEIR 505

Query: 715  RAMGKKIKE----------------EMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
            RAM KK +                      K   + GA + GI++  A  +F+ L+ FA 
Sbjct: 506  RAMSKKKQYIIAENREIFVHGGEMENHRTHKSIHVGGAMELGIAEDTAYEVFDALSDFAK 565

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMP 818
            YGFNKSH+ AYA  +Y TAW+K HYP+EF  A + +E +  +++     DA+   ++I P
Sbjct: 566  YGFNKSHSLAYAKTAYMTAWLKLHYPIEFYTACLCIEEN--KEMAAILADAKANGVKIAP 623

Query: 819  PSVNTPCVDFKVGDNRIYYSLAAIKGVG-TTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
              +NT    F     +IY+  A   GV      +++        + S+ DF  R   K  
Sbjct: 624  VDINTSRAGFTCDTEQIYFGFA---GVSMEKATQNLT-----HDYVSVADFILRGGIKG- 674

Query: 878  NRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN--KHENIFAHEKGTFS 935
            ++  LE LV  GA D F  SR  LL+ L    ++ + ++K + N  K+ NI A  +    
Sbjct: 675  SK--LEGLVKVGAFDNFTTSRKALLEVLPVYAEHMEAIKKAQANVTKYTNILADMEADPE 732

Query: 936  DKITLEKFS--VENSS------------------------------------VRFENEQR 957
             K  L+K+                                             R + E+ 
Sbjct: 733  GKTLLKKYDRKSWPKKEEAQTRLENAKESLDFHTKAIKAQVIPMQQFKDTMYERLQAEKD 792

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQ---QKKTRKGSR 1014
            + G Y +GHP+D+Y    +  G      S          +   + + +    K      +
Sbjct: 793  LCGLYLTGHPVDMYGTP-KDNGCMEIINSTGNCH-----IMGQISNLRICSTKADAS-KK 845

Query: 1015 IGWVTFSEPAKEYEANFF 1032
            + +    +   +     F
Sbjct: 846  LAFFDIEDQTDKIHVCCF 863


>gi|257884340|ref|ZP_05663993.1| DNA polymerase III [Enterococcus faecium 1,231,501]
 gi|257820178|gb|EEV47326.1| DNA polymerase III [Enterococcus faecium 1,231,501]
          Length = 1450

 Score =  218 bits (555), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 139/894 (15%), Positives = 283/894 (31%), Gaps = 151/894 (16%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
              Q N  +             + +L     G + L +L+S    ++  ++  RI  S L+
Sbjct: 597  HDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLISMSN-VEYFERVPRIPRSQLK 655

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NLQRHR 190
            ++  E L++ +    G I  A      + A  R   +   ++    +Y       L ++ 
Sbjct: 656  KM-RENLLIGSACDKGEIFEAMMQKGIEEARNRAKFYDYIEVMPKAVYAPLIEQELVKNE 714

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                     +V++  + +  +VAT N  +L+EED     +L+                  
Sbjct: 715  HDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDAIYRKILINSMGGA-NPLNRHSLPDV 773

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                 +       F     A E  VE   + + I +   P+       +        E+E
Sbjct: 774  HFRTTDEMLTAFHFLGEETAKEIVVENTNKIADICEEVIPVKDELYTPKIPG----SEDE 829

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            +   +    +              +  ++RL+ ELN I    FS  +LI    +  + ++
Sbjct: 830  ISELSYTKAKQMYGDPL------PEIIQKRLEKELNSINGNGFSVIYLIAQKLVHKSNED 883

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------- 399
               VG  RGS   S  A    IT+++PL                                
Sbjct: 884  GYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGSGFDMPEKQCP 942

Query: 400  ----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                        + FE FL      +PD D++F  D + E   Y +  +G + V +  T 
Sbjct: 943  KCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEDYVYRAGTI 1002

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G++  K A   V +  +   +   R  +                                
Sbjct: 1003 GTVADKTAYGYV-KGYERDNNLQFRSAE-------------------------------- 1029

Query: 510  RLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIE 564
             +  +++   G+ R    H  GI+       +    P+         +   T F+   I 
Sbjct: 1030 -VDRLAKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQNSEWKTTHFDFHSIH 1088

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
                   + L L  L     ++  + Q    +D   IP DD E   +      LG+ Q  
Sbjct: 1089 D------NVLKLDILGHDDPTVIRMLQDLSGIDPQTIPTDDPEVMRIFAGPEVLGVSQ-- 1140

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH-PLIDPMLK 683
                 +      P+     +  +           ++  +  +    +   +   +     
Sbjct: 1141 EQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDVWLGNAEELIRRGD 1200

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T   +I     + +  + +G     A  +   + K    ++  +       A K     
Sbjct: 1201 ATLAEVIGCRDDIMVYLIHAGLDSGMAFKIMETVRKGQWNKIPDELRETYLSAMKENNVP 1260

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
               ++    +     Y F K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + + 
Sbjct: 1261 DWYIDSCSKI----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAYFSVRADDFDLVS 1316

Query: 804  K---------------------------------FCQDARQFNIQIMPPSVNTPCV-DFK 829
                                                 +  +   +     +      +F 
Sbjct: 1317 MCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLELANEMLERGFKFGMIDLYKSDAVNFV 1376

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            +  + +     A+  +GT  A+ I+EA  D PF S ED  +R    K+++ ++E
Sbjct: 1377 IEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLSKEDLATR---GKVSKTLIE 1427



 Score = 89.1 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS+ S ++   S+++++ +       AIAITD     +  E       +G++ + 
Sbjct: 339 VELHVHSNMSTMDATNSISDLVAQAGKWGHRAIAITDHGGAQAFPEAHSAGKKSGVKILY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           +V 
Sbjct: 399 GVEANVVDDGVPIAYNDAHEALSEATYVVF 428


>gi|257894713|ref|ZP_05674366.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408]
 gi|257831092|gb|EEV57699.1| DNA polymerase III PolC [Enterococcus faecium 1,231,408]
          Length = 1450

 Score =  218 bits (554), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 139/894 (15%), Positives = 283/894 (31%), Gaps = 151/894 (16%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
              Q N  +             + +L     G + L +L+S    ++  ++  RI  S L+
Sbjct: 597  HDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLISMSN-VEYFERVPRIPRSQLK 655

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NLQRHR 190
            ++  E L++ +    G I  A      + A  R   +   ++    +Y       L ++ 
Sbjct: 656  KM-RENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYAPLIEQELVKNE 714

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                     +V++  + +  +VAT N  +L+EED     +L+                  
Sbjct: 715  HDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDAIYRKILINSMGGA-NPLNRHSLPDV 773

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                 +       F     A E  VE   + + I +   P+       +        E+E
Sbjct: 774  HFRTTDEMLTAFHFLGEETAKEIVVENTNKIADICEEVIPVKDELYTPKIPG----SEDE 829

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            +   +    +              +  ++RL+ ELN I    FS  +LI    +  + ++
Sbjct: 830  ISELSYTKAKQMYGDPL------PEIIQKRLEKELNSINGNGFSVIYLIAQKLVHKSNED 883

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------- 399
               VG  RGS   S  A    IT+++PL                                
Sbjct: 884  GYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGSGFDMPEKQCP 942

Query: 400  ----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                        + FE FL      +PD D++F  D + E   Y +  +G + V +  T 
Sbjct: 943  KCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEDYVYRAGTI 1002

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G++  K A   V +  +   +   R  +                                
Sbjct: 1003 GTVADKTAYGYV-KGYERDNNLQFRSAE-------------------------------- 1029

Query: 510  RLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIE 564
             +  +++   G+ R    H  GI+       +    P+         +   T F+   I 
Sbjct: 1030 -VDRLAKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQNSEWKTTHFDFHSIH 1088

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
                   + L L  L     ++  + Q    +D   IP DD E   +      LG+ Q  
Sbjct: 1089 D------NVLKLDILGHDDPTVIRMLQDLSGIDPQTIPTDDPEVMRIFAGPEVLGVSQ-- 1140

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH-PLIDPMLK 683
                 +      P+     +  +           ++  +  +    +   +   +     
Sbjct: 1141 EQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDVWLGNAEELIRRGD 1200

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T   +I     + +  + +G     A  +   + K    ++  +       A K     
Sbjct: 1201 ATLAEVIGCRDDIMVYLIHAGLDSGMAFKIMETVRKGQWNKIPDELRETYLSAMKENNVP 1260

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
               ++    +     Y F K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + + 
Sbjct: 1261 DWYIDSCSKI----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAYFSVRADDFDLVS 1316

Query: 804  K---------------------------------FCQDARQFNIQIMPPSVNTPCV-DFK 829
                                                 +  +   +     +      +F 
Sbjct: 1317 MCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLELANEMLERGFKFGMIDLYKSDAVNFV 1376

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            +  + +     A+  +GT  A+ I+EA  D PF S ED  +R    K+++ ++E
Sbjct: 1377 IEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLSKEDLATR---GKVSKTLIE 1427



 Score = 91.8 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS+ S ++   S+++++ +       AIAITD     +  E       AG++ + 
Sbjct: 339 VELHVHSNMSTMDATNSISDLVAQAGKWGHRAIAITDHGGAQAFPEAHSAGKKAGVKILY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N  +        +V 
Sbjct: 399 GVEANVVDDGVPIAYNDAREALSEATYVVF 428


>gi|257878528|ref|ZP_05658181.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|293567721|ref|ZP_06679063.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium E1071]
 gi|294618725|ref|ZP_06698257.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium E1679]
 gi|294620761|ref|ZP_06699968.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium U0317]
 gi|257812756|gb|EEV41514.1| DNA polymerase III [Enterococcus faecium 1,230,933]
 gi|291589564|gb|EFF21370.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium E1071]
 gi|291595038|gb|EFF26383.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium E1679]
 gi|291599741|gb|EFF30751.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium U0317]
          Length = 1450

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 139/894 (15%), Positives = 283/894 (31%), Gaps = 151/894 (16%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
              Q N  +             + +L     G + L +L+S    ++  ++  RI  S L+
Sbjct: 597  HDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLISMSN-VEYFERVPRIPRSQLK 655

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NLQRHR 190
            ++  E L++ +    G I  A      + A  R   +   ++    +Y       L ++ 
Sbjct: 656  KM-RENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYAPLIEQELVKNE 714

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                     +V++  + +  +VAT N  +L+EED     +L+                  
Sbjct: 715  HDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDAIYRKILINSMGGA-NPLNRHSLPDV 773

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                 +       F     A E  VE   + + I +   P+       +        E+E
Sbjct: 774  HFRTTDEMLTAFHFLGEETAKEIVVENTNKIADICEEVIPVKDELYTPKIPG----SEDE 829

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            +   +    +              +  ++RL+ ELN I    FS  +LI    +  + ++
Sbjct: 830  ISELSYTKAKQMYGDPL------PEIIQKRLEKELNSINGNGFSVIYLIAQKLVHKSNED 883

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------- 399
               VG  RGS   S  A    IT+++PL                                
Sbjct: 884  GYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGSGFDMPEKQCP 942

Query: 400  ----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                        + FE FL      +PD D++F  D + E   Y +  +G + V +  T 
Sbjct: 943  KCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEDYVYRAGTI 1002

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G++  K A   V +  +   +   R  +                                
Sbjct: 1003 GTVADKTAYGYV-KGYERDNNLQFRSAE-------------------------------- 1029

Query: 510  RLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIE 564
             +  +++   G+ R    H  GI+       +    P+         +   T F+   I 
Sbjct: 1030 -VDRLAKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQNSEWKTTHFDFHSIH 1088

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
                   + L L  L     ++  + Q    +D   IP DD E   +      LG+ Q  
Sbjct: 1089 D------NVLKLDILGHDDPTVIRMLQDLSGIDPQTIPTDDPEVMRIFAGPEVLGVSQ-- 1140

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH-PLIDPMLK 683
                 +      P+     +  +           ++  +  +    +   +   +     
Sbjct: 1141 EQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDVWLGNAEELIRRGD 1200

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T   +I     + +  + +G     A  +   + K    ++  +       A K     
Sbjct: 1201 ATLAEVIGCRDDIMVYLIHAGLDSGMAFKIMETVRKGQWNKIPDELRETYLSAMKENNVP 1260

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
               ++    +     Y F K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + + 
Sbjct: 1261 DWYIDSCSKI----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAYFSVRADDFDLVS 1316

Query: 804  K---------------------------------FCQDARQFNIQIMPPSVNTPCV-DFK 829
                                                 +  +   +     +      +F 
Sbjct: 1317 MCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLELANEMLERGFKFGMIDLYKSDAVNFV 1376

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            +  + +     A+  +GT  A+ I+EA  D PF S ED  +R    K+++ ++E
Sbjct: 1377 IEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLSKEDLATR---GKVSKTLIE 1427



 Score = 91.0 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS+ S ++   S+++++ +       AIAITD     +  E       AG++ + 
Sbjct: 339 VELHVHSNMSTMDATNSISDLVAQAGKWGHRAIAITDHGGAQAFPEAHSAGKKAGVKILY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           +V 
Sbjct: 399 GVEANVVDDGVPIAYNDAHEALSEATYVVF 428


>gi|293556647|ref|ZP_06675212.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039]
 gi|291601182|gb|EFF31469.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1039]
          Length = 1450

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 139/894 (15%), Positives = 283/894 (31%), Gaps = 151/894 (16%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
              Q N  +             + +L     G + L +L+S    ++  ++  RI  S L+
Sbjct: 597  HDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLISMSN-VEYFERVPRIPRSQLK 655

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NLQRHR 190
            ++  E L++ +    G I  A      + A  R   +   ++    +Y       L ++ 
Sbjct: 656  KM-RENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYAPLIEQELVKNE 714

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                     +V++  + +  +VAT N  +L+EED     +L+                  
Sbjct: 715  HDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDAIYRKILINSMGGA-NPLNRHSLPDV 773

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                 +       F     A E  VE   + + I +   P+       +        E+E
Sbjct: 774  HFRTTDEMLTAFHFLGEETAKEIVVENTNKIADICEEVIPVKDELYTPKIPG----SEDE 829

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            +   +    +              +  ++RL+ ELN I    FS  +LI    +  + ++
Sbjct: 830  ISELSYTKAKQMYGDPL------PEIIQKRLEKELNSINGNGFSVIYLIAQKLVHKSNED 883

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------- 399
               VG  RGS   S  A    IT+++PL                                
Sbjct: 884  GYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGSGFDMPEKQCP 942

Query: 400  ----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                        + FE FL      +PD D++F  D + E   Y +  +G + V +  T 
Sbjct: 943  KCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEDYVYRAGTI 1002

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G++  K A   V +  +   +   R  +                                
Sbjct: 1003 GTVADKTAYGYV-KGYERDNNLQFRSAE-------------------------------- 1029

Query: 510  RLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIE 564
             +  +++   G+ R    H  GI+       +    P+         +   T F+   I 
Sbjct: 1030 -VDRLAKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQNSEWKTTHFDFHSIH 1088

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
                   + L L  L     ++  + Q    +D   IP DD E   +      LG+ Q  
Sbjct: 1089 D------NVLKLDILGHDDPTVIRMLQDLSGIDPQTIPTDDPEVMRIFAGPEVLGVSQ-- 1140

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH-PLIDPMLK 683
                 +      P+     +  +           ++  +  +    +   +   +     
Sbjct: 1141 EQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDVWLGNAEELIRRGD 1200

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T   +I     + +  + +G     A  +   + K    ++  +       A K     
Sbjct: 1201 ATLAEVIGCRDDIMVYLIHAGLDSGMAFKIMETVRKGQWNKIPDELRETYLSAMKENNVP 1260

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
               ++    +     Y F K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + + 
Sbjct: 1261 DWYIDSCSKI----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAYFSVRADDFDLVS 1316

Query: 804  K---------------------------------FCQDARQFNIQIMPPSVNTPCV-DFK 829
                                                 +  +   +     +      +F 
Sbjct: 1317 MCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLELANEMLERGFKFGMIDLYKSDAVNFV 1376

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            +  + +     A+  +GT  A+ I+EA  D PF S ED  +R    K+++ ++E
Sbjct: 1377 IEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLSKEDLATR---GKVSKTLIE 1427



 Score = 91.0 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS+ S ++   S+++++ +       AIAITD     +  E       AG++ + 
Sbjct: 339 VELHVHSNMSTMDATNSISDLVAQAGKWGHRAIAITDHGGAQAFPEAHSAGKKAGVKILY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           +V 
Sbjct: 399 GVEANVVDDGVPIAYNDAHEALSEATYVVF 428


>gi|69246860|ref|ZP_00604152.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha
            subunit, Gram-positive type [Enterococcus faecium DO]
 gi|257882946|ref|ZP_05662599.1| DNA polymerase III [Enterococcus faecium 1,231,502]
 gi|257889275|ref|ZP_05668928.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260560113|ref|ZP_05832291.1| DNA polymerase III [Enterococcus faecium C68]
 gi|293560202|ref|ZP_06676704.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium E1162]
 gi|314937503|ref|ZP_07844836.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04]
 gi|314942162|ref|ZP_07849016.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C]
 gi|314947498|ref|ZP_07850913.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082]
 gi|314951485|ref|ZP_07854534.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A]
 gi|314992575|ref|ZP_07857993.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B]
 gi|314995490|ref|ZP_07860590.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01]
 gi|68195041|gb|EAN09504.1| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha
            subunit, Gram-positive type [Enterococcus faecium DO]
 gi|257818604|gb|EEV45932.1| DNA polymerase III [Enterococcus faecium 1,231,502]
 gi|257825635|gb|EEV52261.1| DNA polymerase III alpha subunit [Enterococcus faecium 1,231,410]
 gi|260073948|gb|EEW62272.1| DNA polymerase III [Enterococcus faecium C68]
 gi|291605874|gb|EFF35306.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium E1162]
 gi|313590324|gb|EFR69169.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a01]
 gi|313592867|gb|EFR71712.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133B]
 gi|313596325|gb|EFR75170.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133A]
 gi|313599085|gb|EFR77930.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133C]
 gi|313643144|gb|EFS07724.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0133a04]
 gi|313646048|gb|EFS10628.1| DNA polymerase III, alpha subunit [Enterococcus faecium TX0082]
          Length = 1452

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 139/894 (15%), Positives = 282/894 (31%), Gaps = 151/894 (16%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
              Q N  +             + +L     G + L +L+S    ++  ++  RI  S L+
Sbjct: 599  HDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLISMSN-VEYFERVPRIPRSQLK 657

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NLQRHR 190
            ++  E L++ +    G I  A      + A  R   +   ++    +Y       L ++ 
Sbjct: 658  KM-RENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYAPLIEQELVKNE 716

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                     +V++  + +  +VAT N  +L+EED     +L+                  
Sbjct: 717  HDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDAIYRKILINSMGGA-NPLNRHSLPDV 775

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                 +       F     A E  VE   + + I +   P+       +        E+E
Sbjct: 776  HFRTTDEMLTAFHFLGEETAKEIVVENTNKIADICEEVIPVKDELYTPKIPG----SEDE 831

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            +   +    +              +  ++RL  ELN I    FS  +LI    +  + ++
Sbjct: 832  ISELSYTKAKQMYGDPL------PEIIQKRLKKELNSINGNGFSVIYLIAQKLVHKSNED 885

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------- 399
               VG  RGS   S  A    IT+++PL                                
Sbjct: 886  GYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGSGFDMPEKQCP 944

Query: 400  ----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                        + FE FL      +PD D++F  D + E   Y +  +G + V +  T 
Sbjct: 945  KCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEDYVYRAGTI 1004

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G++  K A   V +  +   +   R  +                                
Sbjct: 1005 GTVADKTAYGYV-KGYERDNNLQFRSAE-------------------------------- 1031

Query: 510  RLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIE 564
             +  +++   G+ R    H  GI+       +    P+         +   T F+   I 
Sbjct: 1032 -VDRLAKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQNSEWKTTHFDFHSIH 1090

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
                   + L L  L     ++  + Q    +D   IP DD E   +      LG+ Q  
Sbjct: 1091 D------NVLKLDILGHDDPTVIRMLQDLSGIDPQTIPTDDPEVMRIFAGPEVLGVSQ-- 1142

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH-PLIDPMLK 683
                 +      P+     +  +           ++  +  +    +   +   +     
Sbjct: 1143 EQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDVWLGNAEELIRRGD 1202

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T   +I     + +  + +G     A  +   + K    ++  +       A K     
Sbjct: 1203 ATLAEVIGCRDDIMVYLIHAGLDSGMAFKIMETVRKGQWNKIPDELRETYLSAMKENNVP 1262

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
               ++    +     Y F K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + + 
Sbjct: 1263 DWYIDSCSKI----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAYFSVRADDFDLVS 1318

Query: 804  K---------------------------------FCQDARQFNIQIMPPSVNTPCV-DFK 829
                                                 +  +   +     +      +F 
Sbjct: 1319 MCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLELANEMLERGFKFGMIDLYKSDAVNFV 1378

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            +  + +     A+  +GT  A+ I+EA  D PF S ED  +R    K+++ ++E
Sbjct: 1379 IEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLSKEDLATR---GKVSKTLIE 1429



 Score = 91.0 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS+ S ++   S+++++ +       AIAITD     +  E       AG++ + 
Sbjct: 341 VELHVHSNMSTMDATNSISDLVAQAGKWGHRAIAITDHGGAQAFPEAHSAGKKAGVKILY 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           +V 
Sbjct: 401 GVEANVVDDGVPIAYNDAHEALSEATYVVF 430


>gi|294613939|ref|ZP_06693874.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636]
 gi|291593214|gb|EFF24788.1| DNA polymerase III, alpha subunit [Enterococcus faecium E1636]
          Length = 1450

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 139/894 (15%), Positives = 283/894 (31%), Gaps = 151/894 (16%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
              Q N  +             + +L     G + L +L+S    ++  ++  RI  S L+
Sbjct: 597  HDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLISMSN-VEYFERVPRIPRSQLK 655

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NLQRHR 190
            ++  E L++ +    G I  A      + A  R   +   ++    +Y       L ++ 
Sbjct: 656  KM-RENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYAPLIEQELVKNE 714

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                     +V++  + +  +VAT N  +L+EED     +L+                  
Sbjct: 715  HDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDAIYRKILINSMGGA-NPLNRHSLPDV 773

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                 +       F     A E  VE   + + I +   P+       +        E+E
Sbjct: 774  HFRTTDEMLTAFHFLGEETAKEIVVENTNKIADICEEVIPVKDELYTPKIPG----SEDE 829

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            +   +    +              +  ++RL+ ELN I    FS  +LI    +  + ++
Sbjct: 830  ISELSYTKAKQMYGDPL------PEIIQKRLEKELNSINGNGFSVIYLIAQKLVHKSNED 883

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------- 399
               VG  RGS   S  A    IT+++PL                                
Sbjct: 884  GYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGSGFDMPEKQCP 942

Query: 400  ----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                        + FE FL      +PD D++F  D + E   Y +  +G + V +  T 
Sbjct: 943  KCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEDYVYRAGTI 1002

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G++  K A   V +  +   +   R  +                                
Sbjct: 1003 GTVADKTAYGYV-KGYERDNNLQFRSAE-------------------------------- 1029

Query: 510  RLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIE 564
             +  +++   G+ R    H  GI+       +    P+         +   T F+   I 
Sbjct: 1030 -VDRLAKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQNSEWKTTHFDFHSIH 1088

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
                   + L L  L     ++  + Q    +D   IP DD E   +      LG+ Q  
Sbjct: 1089 D------NVLKLDILGHDDPTVIRMLQDLSGIDPQTIPTDDPEVMRIFAGPEVLGVSQ-- 1140

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH-PLIDPMLK 683
                 +      P+     +  +           ++  +  +    +   +   +     
Sbjct: 1141 EQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDVWLGNAEELIRRGD 1200

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T   +I     + +  + +G     A  +   + K    ++  +       A K     
Sbjct: 1201 ATLAEVIGCRDDIMVYLIHAGLDSGMAFKIMETVRKGQWNKIPDELRETYLSAMKENNVP 1260

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
               ++    +     Y F K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + + 
Sbjct: 1261 DWYIDSCSKI----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAYFSVRADDFDLVS 1316

Query: 804  K---------------------------------FCQDARQFNIQIMPPSVNTPCV-DFK 829
                                                 +  +   +     +      +F 
Sbjct: 1317 MCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLELANEMLERGFKFGMIDLYKSDAVNFV 1376

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            +  + +     A+  +GT  A+ I+EA  D PF S ED  +R    K+++ ++E
Sbjct: 1377 IEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLSKEDLATR---GKVSKTLIE 1427



 Score = 91.0 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS+ S ++   S+++++ +       AIAITD     +  E       AG++ + 
Sbjct: 339 VELHVHSNMSTMDATNSISDLVAQAGKWGHRAIAITDHGGAQAFPEAHSAGKKAGVKILY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           +V 
Sbjct: 399 GVEANVVDDGVPIAYNDAHEALSEATYVVF 428


>gi|154250388|ref|YP_001411213.1| DNA polymerase III PolC [Fervidobacterium nodosum Rt17-B1]
 gi|154154324|gb|ABS61556.1| DNA polymerase III, alpha subunit [Fervidobacterium nodosum Rt17-B1]
          Length = 1390

 Score =  217 bits (553), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 154/965 (15%), Positives = 330/965 (34%), Gaps = 196/965 (20%)

Query: 46   ITDTNNLFSALEFSQKACAAGI------QPIIGCQL----DIDMQDNLKMTNQGKTPFPT 95
            + D   L  A +  +    A +      + I   +L     I   + L    +   P   
Sbjct: 513  LVDHFGL-GAFQHHRALDDARVTVNVFWKLI---ELAKKKSITTFEKLNKLVENINPLVK 568

Query: 96   VP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
             P  + +LV    G + L +L+S+ +         ++  S L++   EGL++ TG ++  
Sbjct: 569  HPQHVTVLVRNKTGLKNLYKLISKAHTET-FFVVPQVLKSELEK-HREGLLIGTGCANSE 626

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ---------VVQLAY 205
            I        +    + L  +        Y+ +      +    ++         + Q+  
Sbjct: 627  IFELALQRDTGALTEALKFYD-------YIEIMPLDTINSEEFTREEAKEAYKLLYQVGK 679

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
               +P+V  +N+ F+  ED +A  VL+A   +    + +    T    +      + IF 
Sbjct: 680  ELNMPVVMVSNAHFIDPEDIKARKVLLAPQSNIEDEEANYYLRTTQEMI---DAALEIFE 736

Query: 266  DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
            D   A E  V+  ++ + ++    P+  +    + +      E +LR             
Sbjct: 737  DEQIAKEVVVDNPKKIANMIDTIQPLEKKLHPPKIEG----AEEKLRTMTYEKAYQLYGN 792

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                     +   +R++ ELN I    ++  ++I    ++ A ++   VG  RGS   S+
Sbjct: 793  PL------PEIVEKRIEKELNSIIGHGYAVLYMIAHLIVKKAGEDGYVVG-SRGSVGSSL 845

Query: 386  TAYALTITDIDPLRFS---------------------------------------LLFER 406
             A+ + IT+++PL                                          + FE 
Sbjct: 846  VAHLVGITEVNPLPAHYRCPDCKYFELHEEFGSGYDLPDKLCPKCGAKLEKVGQDIPFEV 905

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            F+  +   +PD D++F  + ++   ++++  +G  +V +  T  ++  ++A+  V     
Sbjct: 906  FMGFEGDKVPDIDLNFSGEYQERAHKFIEELFGKSKVFRAGTISTIADRSAIGYVK---- 961

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
                        + +   + V+    A+  R                 +  + G+ R   
Sbjct: 962  ----------AYMEDKNGNIVNPLNPAEQERL----------------TMYVTGVKRTTG 995

Query: 527  THAAGIVI--GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             H  G++I   +  +    P           +  T F  ++I    LIK D LG    T+
Sbjct: 996  QHPGGLMIVPNEYEIYDFTPFQHPANDKKSGVYTTHFAYEFIHD-DLIKLDALGHDDPTM 1054

Query: 582  LQKSLDFLAQRGVKVDLSLIPFDDHETY-----------HLLTTKGTLGIFQLESSGMRQ 630
            ++  L +       + + +        +            L T  GT+GI +  +  +  
Sbjct: 1055 IR--LLYEYSGIDPMTIPMDDKKTISIFSSTKALGVDPEELGTDVGTIGIPEFGTDFVMG 1112

Query: 631  ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
             L   +P    +++ +  L                N +  I      +  ++     ++I
Sbjct: 1113 MLRETRPKTFAELVRISGLSHG-------TDVWLGNAQTLINKKIATLSDVISCRDDIMI 1165

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            Y         +  G   S A  +   + K    + ++      +   ++ +      +  
Sbjct: 1166 YL--------IHKGVPHSNAFKIMENVRKGKGLKEEEI-----NIMKEHNVPDWFIESCQ 1212

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------- 800
            ++      Y F K+HA AY  ++++ A+ K HYP+ F AA  + + D  +          
Sbjct: 1213 KI-----KYLFPKAHAVAYVSMAFRIAYFKVHYPLAFYAAYFSTKGDEFDAELILKGKEA 1267

Query: 801  ----------KIKKFCQDARQFNIQIMPPSVNTPCVDFK-------------VGDNRIYY 837
                       +KK  ++  +  +      +      FK             +    +  
Sbjct: 1268 IKKRLVELAASMKKDVKEKNEEKVLQAALEMLLRGYGFKKPDLKRSDAKRFIIDGKDLLI 1327

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
                I G+G   A  I+E  A+KP+ S+ED  +R    ++ +  +E L   G LD    +
Sbjct: 1328 PFNKIHGIGENVANSIVEKRAEKPYTSIEDLMNRA---RVTKAQVEVLKRIGVLDGLPET 1384

Query: 898  RMQLL 902
               +L
Sbjct: 1385 DQAML 1389



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 41/90 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S L+  + ++  +         AIAITD  N+ +  EF   A +AG++PI 
Sbjct: 297 VELHAHTKMSDLDSVMDISEYVSTAKKWGWEAIAITDHGNVQAIPEFFDIAKSAGLKPIF 356

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G +L +       M N+ +        +VL
Sbjct: 357 GSELYLANDPKRIMMNEIEGNVDDYTYVVL 386


>gi|331090692|ref|ZP_08339541.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330400106|gb|EGG79757.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 1487

 Score =  217 bits (553), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 157/949 (16%), Positives = 302/949 (31%), Gaps = 179/949 (18%)

Query: 53   FSA-----LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
              A     ++F +      I         +   +     N           +++L     
Sbjct: 600  AGATAEIFVKFVEMLKEREIT-------TLKGVNEFGAMNPDAIRKMPAHHVIILAKNDV 652

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            G   L  LVS  +L     +  RI  S L     EGLI+ +   +G + +A   + S+  
Sbjct: 653  GRVNLYTLVSMSHLK-YFGRMPRIPKSELNRY-REGLIVGSACEAGELYQAILNDKSEEQ 710

Query: 168  EKRLLTFKKLFGDRLYVNLQRHRGY------DR-----------YRESQVVQLAYTHELP 210
              +++ F        Y+ +Q           +R               ++V+L    +  
Sbjct: 711  IAKIVNFYD------YLEIQPLGNNAFMLESERISNVNTKEDLIQINKKIVKLGEEFQKM 764

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
            +V T +  FL  +D E +  ++        +    P                  +     
Sbjct: 765  VVGTCDVHFLDPDD-EVYRRIIMTGKGFSDADDQAPLYLRTTEEMMSEFSYLGSA----- 818

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
                 EI       +      +      +C  + +  + ELR+           +     
Sbjct: 819  --KAEEIVITNPNRIADMIDPISPVRPDKCPPVIQNSDQELRDICYEKAHSMYGENL--- 873

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                    +RL+ ELN I    F+  ++I    +  + ++   VG  RGS   S  A   
Sbjct: 874  ---PDMVVERLERELNSIISNGFAVMYIIAQKLVWKSVEDGYLVG-SRGSVGSSFVATMA 929

Query: 391  TITDIDPLR---------------------------------------------FSLLFE 405
             IT+++PL                                              F + FE
Sbjct: 930  GITEVNPLSPHYYCKKCHYSDFTSDEVRAYSGLSGWDMPDKKCPVCGEPLAKDGFDIPFE 989

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
             FL       PD D++F  D +    +Y +  +G  +  +  T G+L  K A   V    
Sbjct: 990  TFLGFKGNKEPDIDLNFSGDYQSNAHKYTEVIFGTGQTFRAGTIGTLADKTAYGFVKNYY 1049

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
            +                                   R +      +  I +   G+ R  
Sbjct: 1050 E----------------------------------ERDSRKRKCEIERIVEGCTGIRRST 1075

Query: 526  STHAAGIV--IGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581
              H  GI+       ++   P+           +T           L+K D LG    T+
Sbjct: 1076 GQHPGGIIVLPHGENINSFTPVQHPANDMTTDIITTHFDYHSIDHNLLKLDILGHDDPTI 1135

Query: 582  LQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            ++   D +    G K D + IP DD +   L      LGI   +  G      G+     
Sbjct: 1136 IRMLEDLITDITGEKFDATKIPLDDPDVMALFAGTEVLGIKPEDIGGCPVGCLGIPEFGT 1195

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            + +I +V   +P  I +++  +   +G +  ++    +    K T    I     +    
Sbjct: 1196 DFVIQMVVDTKPKTISDLIRISGLSHGTDVWLNNAQTLIQEGKATISTAICTRDDIMTYL 1255

Query: 701  LLSGYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            +  G    ++  +   + K  + +   K+   +     ++G+ +    +  ++      Y
Sbjct: 1256 INKGLDSEKSFTIMERVRKGLVAKGKCKEWPEYKKDMLEHGVPEWYIGSCEKI-----KY 1310

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK------------------ 801
             F K+HAAAY +++Y+ A+ K +YP+ + AA  ++                         
Sbjct: 1311 MFPKAHAAAYVMMAYRIAYCKVNYPLAYYAAYFSIRASAFSYEIMCQGKDKLEFYLRDYK 1370

Query: 802  ---------------IKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGV 845
                             K  Q+      + +P  + T   D F++ D ++   L +I+G+
Sbjct: 1371 KRSDSLSKKEQDVLKDMKIVQEMYARGFEFLPLDIYTAKADKFQIIDGKLMPPLNSIEGM 1430

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            G   A  +  AS D P+ S +DF  R    K+++ V++ +   G     
Sbjct: 1431 GDKAAEAVELASKDGPYLSRDDFRQRT---KVSKTVIDLMADLGMFGNL 1476



 Score = 73.7 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 4/90 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--SQKACAAG--I 67
           V L  H+  S ++G   +  I+ +       AIAITD   + +  +     +        
Sbjct: 363 VELHCHTKMSDMDGVSEVKAIVKRAHDWGHKAIAITDHGVVQAFPDANHYIETLDKDDPF 422

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           + I G +  +         N+         
Sbjct: 423 KIIYGVEGYLVDDLTDIAVNEDNQTLDDAF 452


>gi|300856235|ref|YP_003781219.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528]
 gi|300436350|gb|ADK16117.1| DNA polymerase III [Clostridium ljungdahlii DSM 13528]
          Length = 1449

 Score =  217 bits (553), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 157/926 (16%), Positives = 292/926 (31%), Gaps = 193/926 (20%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            DID+    +   + +         ++L     G + L +LVS  +L D   +  RI  S 
Sbjct: 598  DIDIYGRDEAAKKEEYKKLKTYHAIILAKDYVGLKNLYKLVSYSHL-DYFYKKPRILKS- 655

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-- 193
            L +  +EGLI+ +  S G + +A     S    + L           Y+ +Q     D  
Sbjct: 656  LYKKYSEGLILGSACSEGELYQAILLGKSDEEIEELAKGYD------YLEIQPLGNNDYL 709

Query: 194  ------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
                             ++V L       +VAT +  F+  ED E +  ++        +
Sbjct: 710  VRTEQVPGKEYLEEINKKIVALGEKLNKLVVATGDVHFMDPED-EIYRRILEAGQGFKDA 768

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                P                      +A E  V    + S + +  +PI P       D
Sbjct: 769  DNQAPLYLKTTEEMLEEFSYLGKE---KAYEVVVTNTNKISDMCEPISPISPEKCPPHID 825

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              ++  ++    KA            +      +  + RLD EL  I +  FS  ++I  
Sbjct: 826  GCEQTIKDIAYKKAHE----------LYGDPLPEIVQSRLDRELESIIKNGFSVMYIIAQ 875

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------- 399
              +  + ++   VG  RGS   S  A    IT+++ L                       
Sbjct: 876  KLVWKSNEDGYLVG-SRGSVGSSFVANMTGITEVNSLPPHYRCPKCKYSDFSDYGVKNGF 934

Query: 400  ------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
                                + FE FL  +    PD D++F  + + +  +Y +  +G  
Sbjct: 935  DLPDKVCPVCGEKLAKDGIDIPFETFLGFNGDKEPDIDLNFSGEYQAKAHKYTEVIFGKG 994

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
               +  T G++  K A   V +                                      
Sbjct: 995  TTFKAGTIGTIAEKTAFGYVKKYFD----------------------------------E 1020

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYR---DVRSDLPVT 556
            +    +   +  IS    G+ R    H  GI++    R + +  P+     D  SD+  T
Sbjct: 1021 KNIPVNKAEITRISAGCTGIKRTTGQHPGGIIVVPKGREIFEFCPVQHPADDPNSDIITT 1080

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             F+   I+       + L L  L     ++  + Q    V+   IP DD ET  + ++  
Sbjct: 1081 HFDYHSID------QNLLKLDILGHDDPTVIRMLQDITGVNPHEIPMDDKETMSIFSSTE 1134

Query: 617  --------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
                          T GI +  +  +R  L    P    D+I +  L          V+ 
Sbjct: 1135 ALGVTPEQINSKVGTFGIPEFGTKFVRGMLVDTMPKAFSDLICISGLSH-----GTDVWL 1189

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
                           +      T    I     + I  +  G   + A  +   + K   
Sbjct: 1190 GNA----------KDLIDDGIVTLSEAICTRDDIMIYLIKKGLPPNSAFKIMELVRKGKV 1239

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
             +  ++   + +   ++ + +    +  ++      Y F K+HAAAY +++++ AW K H
Sbjct: 1240 SKQPEKWAEYEALMREHKVPEWYIDSCKKI-----KYMFPKAHAAAYVMMAFRIAWFKVH 1294

Query: 783  YPVEFLAASMTLEMDNVEKIKKFCQ---------------------------------DA 809
             P  + AA  T+     +                                        + 
Sbjct: 1295 IPKAYYAAYFTIRAKAFDSEFMIFGKEKVIEKMREIQIMGNQATPKDKDMYDDLEIVLEM 1354

Query: 810  RQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
             +   + +P  +       F V ++ +   + +I G+G   A  I  A+ ++ F S+ED 
Sbjct: 1355 YERGFKFLPIDLYKSHATKFIVEEDGLRPPINSISGMGNIAAESIFSAAREEQFSSIEDV 1414

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCF 894
              R    K+    ++ L   G L   
Sbjct: 1415 KKRA---KIGNSAVDLLKKFGCLKGL 1437



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 2/91 (2%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-CAA-GIQP 69
           V L +H+  S ++   S  +++ +  +    +IAITD   + +  E  +        ++ 
Sbjct: 339 VELHMHTQMSQMDAMTSATDLIKRAMSWGMKSIAITDHGVVQAFPEAHKLLGRDNPDMKI 398

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           I G +  +       +TN       T   ++
Sbjct: 399 IYGVEAYLAPDKKPSVTNPKGQSIDTTYCVL 429


>gi|261207399|ref|ZP_05922085.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289566679|ref|ZP_06447096.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium D344SRF]
 gi|260078290|gb|EEW65995.1| DNA polymerase III [Enterococcus faecium TC 6]
 gi|289161538|gb|EFD09421.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium D344SRF]
          Length = 1452

 Score =  217 bits (553), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 139/894 (15%), Positives = 282/894 (31%), Gaps = 151/894 (16%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
              Q N  +             + +L     G + L +L+S    ++  ++  RI  S L+
Sbjct: 599  HDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLISMSN-VEYFERVPRIPRSQLK 657

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NLQRHR 190
            ++  E L++ +    G I  A      + A  R   +   ++    +Y       L ++ 
Sbjct: 658  KM-RENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYAPLIEQELVKNE 716

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                     +V++  + +  +VAT N  +L+EED     +L+                  
Sbjct: 717  HDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDAIYRKILINSMGGA-NPLNRHSLPDV 775

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                 +       F     A E  VE   + + I +   P+       +        E+E
Sbjct: 776  HFRTTDEMLTAFHFLGEETAKEIVVENTNKIADICEEVIPVKDELYTPKIPG----SEDE 831

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            +   +    +              +  ++RL  ELN I    FS  +LI    +  + ++
Sbjct: 832  ISELSYTKAKQMYGDPL------PEIIQKRLKKELNSINGNGFSVIYLIAQKLVHKSNED 885

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------- 399
               VG  RGS   S  A    IT+++PL                                
Sbjct: 886  GYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGSGFDMPEKQCP 944

Query: 400  ----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                        + FE FL      +PD D++F  D + E   Y +  +G + V +  T 
Sbjct: 945  KCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEDYVYRAGTI 1004

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G++  K A   V +  +   +   R  +                                
Sbjct: 1005 GTVADKTAYGYV-KGYERDNNLQFRSAE-------------------------------- 1031

Query: 510  RLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIE 564
             +  +++   G+ R    H  GI+       +    P+         +   T F+   I 
Sbjct: 1032 -VDRLAKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQNSEWKTTHFDFHSIH 1090

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
                   + L L  L     ++  + Q    +D   IP DD E   +      LG+ Q  
Sbjct: 1091 D------NVLKLDILGHDDPTVIRMLQDLSGIDPQTIPTDDPEVMRIFAGPEVLGVSQ-- 1142

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH-PLIDPMLK 683
                 +      P+     +  +           ++  +  +    +   +   +     
Sbjct: 1143 EQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDVWLGNAEELIRRGD 1202

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T   +I     + +  + +G     A  +   + K    ++  +       A K     
Sbjct: 1203 ATLAEVIGCRDDIMVYLIHAGLDSGMAFKIMETVRKGQWNKIPDELRETYLSAMKENNVP 1262

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
               ++    +     Y F K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + + 
Sbjct: 1263 DWYIDSCSKI----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAYFSVRADDFDLVS 1318

Query: 804  K---------------------------------FCQDARQFNIQIMPPSVNTPCV-DFK 829
                                                 +  +   +     +      +F 
Sbjct: 1319 MCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLELANEMLERGFKFGMIDLYKSDAVNFV 1378

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            +  + +     A+  +GT  A+ I+EA  D PF S ED  +R    K+++ ++E
Sbjct: 1379 IEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLSKEDLATR---GKVSKTLIE 1429



 Score = 91.0 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS+ S ++   S+++++ +       AIAITD     +  E       AG++ + 
Sbjct: 341 VELHVHSNMSTMDATNSISDLVAQAGKWGHRAIAITDHGGAQAFPEAHSAGKKAGVKILY 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           +V 
Sbjct: 401 GVEANVVDDGVPIAYNDAHEALSEATYVVF 430


>gi|302670324|ref|YP_003830284.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316]
 gi|302394797|gb|ADL33702.1| DNA polymerase III C PolC1 [Butyrivibrio proteoclasticus B316]
          Length = 1529

 Score =  217 bits (553), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 147/918 (16%), Positives = 288/918 (31%), Gaps = 174/918 (18%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            ++   + L                ++L     G   L  LVS+ ++ D  ++   I  S 
Sbjct: 667  NLTDVNILGKPTPEMIRHLRPNHCIILAKNTLGRVNLYTLVSKSHI-DYFRRFPLIPKSE 725

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ----RHRG 191
            L +   EGLI+ +   +G +  A            L+ F        Y+ +Q     H  
Sbjct: 726  LLKY-REGLIIGSACCAGELYGAVVEGRPPEEIAGLVNFYD------YLEIQPVGNNHFM 778

Query: 192  YD-------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             D             R    ++V+L      P+VAT ++ FL+ ED              
Sbjct: 779  VDSDRYEDINSDDDIREINKEIVRLGEQFNKPVVATCDAHFLNPEDEIY----------R 828

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
             +    +     +           + ++      +  +     +    +        +  
Sbjct: 829  TIIMAGKGMNDEEPAPLFLRTTEEMMAEFDYLGGDKAKEIVIDNTRKILDMCDSISPVRP 888

Query: 299  E-CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            + C  + +  +  L             +         +  ++RL+ ELN I +  F+  +
Sbjct: 889  DKCPPVIENSDEILTKICYDKAHEIYGE------ELPEIVQERLERELNSIIKNGFAVMY 942

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            +I    +  + ++   VG  RGS   S  A+   IT+++ L                   
Sbjct: 943  IIAQKLVWKSNEDGYLVG-SRGSVGSSFVAFTSGITEVNSLSPHYVCPKCKYSDFDSPEV 1001

Query: 400  ---------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                                       F + FE FL       PD D++F  + + +  +
Sbjct: 1002 LAFGGNSGCDMPDKRCPKCGTMMYKDGFDIPFETFLGFKGDKEPDIDLNFSGEYQSKAHK 1061

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            Y +  +G+ +  +  T  SL  K A   V +                        S +  
Sbjct: 1062 YTEVIFGYGQTFRAGTIASLADKTAFGFVKKYY-----------------DGIGASKRKS 1104

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVR 550
                              +  I Q   G+ R    H  GI+       ++   P+     
Sbjct: 1105 E-----------------INRIVQGCTGIRRGTGQHPGGIIVLPVGENINSFCPVQHPAN 1147

Query: 551  SDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET 608
                  +T           L+K D LG    T+++       Q    +D  L+P DD   
Sbjct: 1148 DMTTATITTHYDYHSIDHNLLKLDILGHDDPTMIR-----FLQDCTGLDPKLVPLDDKNV 1202

Query: 609  YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              L      L +   +  G +    G+     +  + +V    P  + +++  +   +G 
Sbjct: 1203 MSLFMNTTALNVTPEQLGGTKLGCLGLPEFGTDFAMQMVIDAGPSSLSHLIRISGLSHGT 1262

Query: 669  EKIVSIHPLIDPMLKETQG-VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
            +  +     +      T    I  ++ +M               ++      K+    +K
Sbjct: 1263 DVWLGNAQTLIQEGTATIDTCICCRDDIMIYLIQKGLDKSESFKIMEAVRKGKVAGGKEK 1322

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
                +     ++G+      +  ++      Y F K+HAAAY +++++ A+ K + P  F
Sbjct: 1323 NWPEWKKDMIEHGVPDWYIWSCEKI-----KYMFPKAHAAAYVMMAWRIAYFKVYIPQAF 1377

Query: 788  LAASMTLEMDNVEKIKK---------------------------------FCQDARQFNI 814
             AA  ++                                             ++  +  I
Sbjct: 1378 YAAWFSIRAKAFNYEHMCLGENHLHAIMREYQNKKDELTNAQQAEYGDMRLVEEMYERGI 1437

Query: 815  QIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
            + MP  +      DF+V  ++I  +L +I G+G   A  I+EA+ D PF S +DF  R  
Sbjct: 1438 EFMPIDIFKVKSRDFQVIGDKIMPALTSIDGMGEKAADQIVEAAKDGPFLSKDDFRQRT- 1496

Query: 874  SKKLNRRVLESLVFAGAL 891
              K  + V+E +   G L
Sbjct: 1497 --KCPQGVIEKMADMGLL 1512



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 28/114 (24%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA--------- 62
           V L  H+  S ++G   + +I+ +      P IAITD       ++    A         
Sbjct: 392 VELHCHTKMSDMDGVSEVKDIVKQAYKWGMPGIAITDH----GVVQALTDANHVWEDLYS 447

Query: 63  ------CAAG---------IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
                   AG          + ++G +  +       + N    P      +V 
Sbjct: 448 GENKRRKEAGEPPIERQDFFKLVLGVEAYLVDDLKEIVVNDKGQPLDDTTFVVF 501


>gi|323705405|ref|ZP_08116980.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
            xylanolyticum LX-11]
 gi|323535307|gb|EGB25083.1| DNA polymerase III, alpha subunit [Thermoanaerobacterium
            xylanolyticum LX-11]
          Length = 1410

 Score =  217 bits (553), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 151/914 (16%), Positives = 292/914 (31%), Gaps = 186/914 (20%)

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
             + N  + N+          +++LV   +G + L ELVS+  L +   ++ RI  S L +
Sbjct: 570  NEINDYLKNKVDIKKMPTYHVIILVKNQKGLRNLYELVSKSNL-EYFHRNPRIPKSLLSQ 628

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD----- 193
            +  EGL++ +    G + R    N      + ++++        Y+ +Q     +     
Sbjct: 629  M-REGLLIGSACEQGEVFRGLISNLDDDKLQEIVSYYD------YLEVQPLGNNEFLIDK 681

Query: 194  ---------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                          ++  L    + P+VAT +  FL   D   +  ++        + + 
Sbjct: 682  GEVKNKEELIKINKRIYDLGKQFKKPVVATCDVHFLDPWD-NVYRKILMYGKGFKDADRQ 740

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
             P          R        D   A E  ++     +  ++   PI         +   
Sbjct: 741  PPLYFRTTDEMMREFDY---FDREIAKEIVIDNPNEIADSIEDVKPIPDGTFPPSIEG-- 795

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               E ELR   +        +             +RLD ELN I    ++  ++I    +
Sbjct: 796  --AEEELRKLTLNKAHEIYGE------KLPDIVEKRLDKELNSIINNGYAVMYIIAQKLV 847

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------- 399
              +  +   VG  RGS   S  A    IT+++PL                          
Sbjct: 848  TKSLNDGYLVG-SRGSVGSSFVATMSGITEVNPLPPHYICPHCKHSEFILDGSYGSGVDM 906

Query: 400  ----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                              + FE FL  +    PD D++F  D +    +Y +  +G   V
Sbjct: 907  PDKNCPQCGTKMKKDGHDIPFEVFLGFEGDKEPDIDLNFSGDYQPIAHKYTEEIFGTGHV 966

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
             +  T G+L  K A   V +  +                                   + 
Sbjct: 967  FRAGTIGTLADKTAYGFVKKYFE----------------------------------EKN 992

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYR--DVRSDLPVTQFN 559
                   +  +     G  R    H  G+  V  D+ +    P+    D +    +T   
Sbjct: 993  LTVHNAEIKRLVMGCTGAKRTTGQHPGGVMVVPKDKDIYDFTPIQHPADAQDSDIITTHF 1052

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YH 610
                    L+K D LG    T+++   D       ++ L         T           
Sbjct: 1053 DYHSISGRLLKLDILGHDDPTVIRMLEDLTGINAREIPLDDKKTMSLFTSVEALNINPED 1112

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +  T GTLG+ +  +  +RQ L   +P    +++ +  L                N ++ 
Sbjct: 1113 INCTVGTLGLPEFGTKFVRQMLVDTKPTTFAELVRISGLSHG-------TDVWLNNAQDI 1165

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            I      +  ++     ++++   + +       + + E+    + + ++  EEM K   
Sbjct: 1166 IKEGKATLKEVISTRDDIMLFL--ISKGLDKKLSFKIMESVRKGKGIKEEEIEEMKKH-- 1221

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                             + F    +   Y F K+HA AY +++++ A+ K H+P  F A 
Sbjct: 1222 --------------NVPDWFIQSCQKIKYMFPKAHAVAYVIMAFRIAYFKVHHPEAFYAT 1267

Query: 791  SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTP-------------------------- 824
              T+  D          +  + NI+++    N                            
Sbjct: 1268 YFTVRADEFNLDMMDSLEKIKENIRLIESKSNNATAKEKSLLTILEVGLEMYLRGLKFTN 1327

Query: 825  -------CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
                    V F +  + I   L +++G+G   A+ I E      F S+ED  +R    ++
Sbjct: 1328 IDLYKSDAVKFLITKDGILPPLNSLEGIGKQAAKIIAEEREKGKFLSIEDLRNRT---RI 1384

Query: 878  NRRVLESLVFAGAL 891
            ++ V++ L   G L
Sbjct: 1385 SKTVIDILKQHGCL 1398



 Score = 97.6 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 34/86 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH+  S ++G  S  +++ + +     AIAITD   L +  E    A   GI+ I 
Sbjct: 314 VELHVHTQMSSMDGVSSAESLIKRASEWGHKAIAITDHAVLQAYPEAQSAAKKYGIKVIY 373

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       ++           
Sbjct: 374 GIEGYLVNDGVPIVSGSTSATIDGSF 399


>gi|182417583|ref|ZP_02948906.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            butyricum 5521]
 gi|237668138|ref|ZP_04528122.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            butyricum E4 str. BoNT E BL5262]
 gi|182378596|gb|EDT76124.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            butyricum 5521]
 gi|237656486|gb|EEP54042.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            butyricum E4 str. BoNT E BL5262]
          Length = 1450

 Score =  217 bits (552), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 146/910 (16%), Positives = 282/910 (30%), Gaps = 187/910 (20%)

Query: 90   KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG 149
                      ++L  T  G + L +++S  ++ D  ++  R   S + E+  EGLI+ + 
Sbjct: 620  DIKKQPTYHAIILAKTQAGLKNLYKMISTAHI-DNFQRRPRTPKSLIAEM-REGLIIGSA 677

Query: 150  GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--------------HRGYDRY 195
              +G + +A     S    K ++ F        Y+ +Q                    + 
Sbjct: 678  CEAGEVYKAVLDGKSDEELKAIMEFYD------YLEIQPIANNLFLIEKGMVKDENELKT 731

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
               ++  +    +   VAT +  F+  +D EA   ++        + K  P         
Sbjct: 732  INKKIYDIGKECDKMTVATCDVHFMDPKD-EAFRRILMAGQGFKDADKQPPLYFRTTEEM 790

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
             +            A E  +E   + +  + +  PI       + +      E ++RN  
Sbjct: 791  LKEFAYLGSE---IANEVVIENTNKIADSIDIIKPIPDETFPPKIEG----AEEDIRNMT 843

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
            +  +     +         +  ++RLD ELN I    ++  +LI    +  +  +   VG
Sbjct: 844  MNKVHSIYGENL------PEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSNDDGYLVG 897

Query: 376  PGRGSGAGSVTAYALTITDIDPLR------------------------------------ 399
              RGS   S  A    IT+++ L                                     
Sbjct: 898  -SRGSVGSSFVATMSDITEVNGLPPHYVCPNCKKSEFFMDGSISSGADLDDKDCPECGTP 956

Query: 400  -----FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  +    PD D++F  + +  V RY +  +G     +  T G++  
Sbjct: 957  YKKDGHDIPFETFLGFEGDKEPDIDLNFSGEYQGVVHRYCEVLFGKGHTFKAGTIGTVAE 1016

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V + L                                    R        +  +
Sbjct: 1017 KTAYGYVKKYLD----------------------------------ERGIVVPQAEVDRL 1042

Query: 515  SQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIK 570
            +    G+ R    H  GI  V  D  +    P+      +    +T           L+K
Sbjct: 1043 TIGCTGIKRTTGQHPGGIMVVPADNEIYNFCPIQHPADDNDTDVITTHFDYHSISGRLLK 1102

Query: 571  FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIF 621
             D LG    T+L+   D        + L+        T           L    G+ G+ 
Sbjct: 1103 LDILGHDDPTVLRMLQDITGLDPKTIPLNDKKVLSLFTSPEALGVTKEELECEVGSYGLP 1162

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            +  +  +RQ L   QP    D++ +  L                N +  I      +   
Sbjct: 1163 EFGTKFVRQMLVDTQPKTFSDLVRISGLSHG-------TDVWLNNAQYYIKEGFTTLREC 1215

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            +     +++Y         +        A  +   + K      D +     +   K+ +
Sbjct: 1216 IATRDDIMVYL--------MYKDIPPKTAFTIMEKVRKGKGLSEDDE-----TLMKKHNV 1262

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE- 800
             +    +  ++      Y F K HA AY +++ + A+ K +YP  + A   T+  D+ + 
Sbjct: 1263 PEWYIGSCKKI-----KYMFPKGHAVAYVMMAVRIAYFKVYYPQAYYATYFTVRADDFDA 1317

Query: 801  --------------------------------KIKKFCQDARQFNIQIMPPSVNTPCV-D 827
                                             + + C +A +  +  +   +       
Sbjct: 1318 NLICLGEGAVHAKLQELYALGNNASVKDKGMITVLELCFEAYKRGVNFLRVDLYKSDAVK 1377

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            F + D  +   L AI G+    A+ I+EA  +  F S ED   R     +++  +E L  
Sbjct: 1378 FIIEDGNLRPPLNAIPGIADNAAKGIVEARKNGEFISKEDLRIRA---GVSKTAIEGLTS 1434

Query: 888  AGALDCFGYS 897
             G L+    +
Sbjct: 1435 HGCLEGMSET 1444



 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 37/86 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++G  +   ++ + A+   PAIAITD   + +  E    A   GI+ + 
Sbjct: 352 VELHLHTTMSSMDGMTAPGKLIGRAASWGHPAIAITDHGGVQAYPEAQSAAKKHGIKVLY 411

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       + N+         
Sbjct: 412 GVEAYLVDDGVPIVLNEKGDSLDDTY 437


>gi|237737108|ref|ZP_04567589.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC 9817]
 gi|229420970|gb|EEO36017.1| DNA polymerase III alpha subunit [Fusobacterium mortiferum ATCC 9817]
          Length = 1450

 Score =  217 bits (552), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 149/912 (16%), Positives = 310/912 (33%), Gaps = 182/912 (19%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG--- 149
                 ++++LV    G + + +LVS  ++   G +  RI  S L++   EGLI+ +    
Sbjct: 608  KQDTHNVMVLVQNLAGLKNMYKLVSEAHIDYYGNKKPRILKSHLEKY-REGLIVGSSMTV 666

Query: 150  --GSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYVNLQRHRGYD--------RYRE 197
               + G +   +     +  EK +  +   +L     Y  +    G              
Sbjct: 667  HFSNDGELTDYYMRYDYESIEKNIGFYDYIELLPKGAYSEIYEDDGTGSISSFKAIEDMN 726

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
                 LA    + + A++N  +L EEDY+   +L+  + +   + + +          + 
Sbjct: 727  RYFYNLAKEKGILVTASSNVHYLDEEDYKIRSILLYGSGNVFRANQYKIDNKFYFRTTDE 786

Query: 258  SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
                  +     A E  V      +  ++   P+   F   + D      EN ++     
Sbjct: 787  MLEEFSYLGEDIAREIVVTNTNLIADKIEKIKPVPDGFYPPKID----NAENIVKEMTYE 842

Query: 318  GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
                             +    R++ ELN I    FS  +L     ++ +  +   VG  
Sbjct: 843  KAYRIYGNPL------PEIVNARIERELNAIIGNGFSVLYLSAQKLVKKSLDSGYLVG-S 895

Query: 378  RGSGAGSVTAYALTITDIDPLR-------------------------------------- 399
            RGS   S+ A+ + IT+++ L                                       
Sbjct: 896  RGSVGSSLVAFMMGITEVNALYPHYICTNPECKNSEFIEREGVGIDLPEKNCPKCGKPYK 955

Query: 400  ---FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
               +S+ FE F+  +   +PD D++F  + + E+ RY +  +G E V +  T  +L  K 
Sbjct: 956  RDGYSIPFEVFMGFNGDKVPDIDLNFSGEYQSEIHRYCEQLFGKENVFKAGTISTLAEKN 1015

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            A   V +  +    + ++                                    +L +++
Sbjct: 1016 AEGYVKKYFEEHDMKNNKA----------------------------------EILRLAK 1041

Query: 517  KLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKF 571
            K EG  +    H  G+V+      + +  P+ +       D   T ++   +++  L+K 
Sbjct: 1042 KCEGAKKTTGQHPGGMVVVPHDHTIYEFCPVQKPANDEKNDSITTHYDYHVMDE-QLVKL 1100

Query: 572  DFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------T 617
            D LG    T ++     L Q    VD+  IP  D +T  + ++                T
Sbjct: 1101 DILGHDDPTTIK-----LLQEYTGVDIYSIPLSDPDTLKIFSSTESLGVTPEQINSVVGT 1155

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
             G+ +  +  +RQ L    P    +++ +  L   G    +         K+        
Sbjct: 1156 FGVPEFGTPFVRQMLIDTMPKTFAELVRISGLSH-GTDVWLNNAQEFIRQKQA------- 1207

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
                   T   +I     +    +  G     A  +   + K    +  +  + +     
Sbjct: 1208 -------TLSQVITVRDDIMNYLIDQGLEKGTAFKIMEFVRKGQPTKNPEGWKAYSDLMK 1260

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            ++ +++    +   +      Y F K HA AY +++ + A+ K HYP+ F AA ++ + +
Sbjct: 1261 EHNVAEWYIESCRRI-----KYMFPKGHAVAYVMMAMRIAYFKVHYPLAFYAAYLSRKAE 1315

Query: 798  NVEK-------------------------------IKKFCQDARQFNIQIMPPSVNTPC- 825
            + +                                I +   +     ++ +P  +     
Sbjct: 1316 DFDYEIMGKPESAKSHLEILSKEPKLDVKKKAEMAICEIVVEMYARGLEFLPIDIYKSGG 1375

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            V F + D +I   L A+ G+G     +I++   +  F S ED   R    K+++ +++ L
Sbjct: 1376 VKFTIEDGKIRVPLIALAGLGGAVIDNIIKEREESKFLSFEDLKRRT---KVSQTIIDKL 1432

Query: 886  VFAGALDCFGYS 897
                A+D    +
Sbjct: 1433 KMIKAIDSLSET 1444



 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS  S + G   + +I+ +       A+AITD   + S     + A    I+PI+
Sbjct: 338 VELHTHSKMSEMVGVTDIADIIKQAIKFGHSAVAITDYAVVHSFPFAYKAAKGKDIKPIL 397

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           GC++ +   + L + N    P      IV 
Sbjct: 398 GCEMYMVDDEALMVRNPKDVPLLEENFIVF 427


>gi|78044072|ref|YP_360592.1| DNA polymerase III subunit alpha [Carboxydothermus hydrogenoformans
            Z-2901]
 gi|77996187|gb|ABB15086.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Carboxydothermus hydrogenoformans Z-2901]
          Length = 1407

 Score =  217 bits (552), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 152/917 (16%), Positives = 291/917 (31%), Gaps = 177/917 (19%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
             + D  K+             + +LV   EG   L  L++  +L     +  RI  S L 
Sbjct: 564  SLDDLAKINYNYINDRSKTYHVSILVKNQEGLYNLYRLITLSHLK-YFHRHPRIPKSELM 622

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-----GDRLYVNL--QRHR 190
                EGL++ T   +G +  A   N  +     +  F   F     G+  ++ L  QR +
Sbjct: 623  RY-REGLLIGTACEAGELFTALLENQPESRILEIARFYDYFEIMPKGNNAFL-LRNQRLK 680

Query: 191  GYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                      +++ L      P+VAT +  FL  ED E +  ++              + 
Sbjct: 681  SEQELEELNRKIIALGEKLNKPVVATGDVHFLEPED-EIYRRILQKGQG---YDDAELQP 736

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                           +    +A E  V+  R+ +  ++   PI   F     +       
Sbjct: 737  PIYLKTTEEMLKEFAYLGQEKAYEVVVDNPRKIAEQIEEIKPIPDEFYPPIIEGAD---- 792

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
                 +       R  +  +      +   +RL  EL+ I    F+  +LI    ++ + 
Sbjct: 793  ----RQIYEMTYQRAHE--LYGDPLPEIVEKRLKRELDAIINNGFAVLYLIAHKLVKKSL 846

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------------- 399
             +   VG  RGS   S+ A    IT+++PL                              
Sbjct: 847  DDGYLVG-SRGSVGSSLVATMTMITEVNPLPPHYLCPNCRYSEFITDGSYGCGADMPDKN 905

Query: 400  ------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                          + FE F+  +   +PD D++F  + +    +Y +  +G + V +  
Sbjct: 906  CPRCGTLLKKEGHDIPFETFMGFEGDKVPDIDLNFSGEYQPRAHKYTEELFGKDYVFRAG 965

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T  ++  K A   V +                  +   P     I               
Sbjct: 966  TIATVADKTAFGFVKK---------------YFEETGRPARQAWI--------------- 995

Query: 508  VDRLLEISQKLEGLYRHASTHAAG--IVIGDRPLSQLVPMYRDVRSDL--PVTQFNMKWI 563
                  ++  + G+ R    H  G  +V  +  + +  P+           VT       
Sbjct: 996  ----NWLTNGIVGVKRTTGQHPGGLMVVPKNNDVHRFTPLQYPADDKSAGVVTTHFDYHS 1051

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTT 614
              + L+K D LG    T+L+   D        + L         +           + TT
Sbjct: 1052 ISSRLVKLDILGHDDPTVLKMLEDLTGIDPRTIRLDDRKTLGIFSSTEPLGVTPEQIRTT 1111

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
             GT GI +  +  +RQ LE  +P    +++ +                   N ++ I + 
Sbjct: 1112 VGTYGIPEFGTRFVRQMLEDTRPKSFTELVRISGFSHG-------TDVWLNNAQDLIRAG 1164

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
               +   +     ++IY  Q         G    +A  +   + K      ++      +
Sbjct: 1165 ICKLSDAISTRDDIMIYLLQ--------KGVPPKKAFKIMENVRKGKGISEEEI-----A 1211

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               ++G+      +  ++      Y F K+HA AY +++++ A+ K +YP  F A   T+
Sbjct: 1212 VMKEHGVPDWFIGSCQKI-----KYLFPKAHAVAYVMMAFRIAYFKVYYPEAFYATYFTV 1266

Query: 795  EMDNVEKIKKFCQ---------------------------------DARQFNIQIMPPSV 821
              D+ +                                        +     I+++P  +
Sbjct: 1267 RADDFDLPVILAGPEKIWKTLDELEQRGGNLTAKEKGLVTVLEVALEMLARGIKMLPVDL 1326

Query: 822  NTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
                   F +    I     A+ G+G   A +I++A  +  F S+ED  +R    K  + 
Sbjct: 1327 EKSDATRFLITPEGILPPFVALPGIGEAAAINIVKAREEGMFVSIEDLKTR---GKATKA 1383

Query: 881  VLESLVFAGALDCFGYS 897
            V+E L   G L     +
Sbjct: 1384 VIEVLDAHGCLKGLAPT 1400



 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 35/86 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L +HS  S ++  + L  +   + +    A+AITD   + +  E ++ +   GI+ I 
Sbjct: 308 IELHLHSKMSAMDSVVDLEKLFQTLKSWGHEAVAITDHGVVQAFPEAAELSAKYGIKVIY 367

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       + N         P
Sbjct: 368 GLEGYLVDDGLPVVFNPEPLSLKETP 393


>gi|254479461|ref|ZP_05092788.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Carboxydibrachium pacificum DSM 12653]
 gi|214034604|gb|EEB75351.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Carboxydibrachium pacificum DSM 12653]
          Length = 1375

 Score =  217 bits (552), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 152/919 (16%), Positives = 299/919 (32%), Gaps = 191/919 (20%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  +K    GI+        +   +++ M  +       V  + +LV   +G + L E+
Sbjct: 544  IKMLEKLQEIGIK-------SVSEINSVLMEREVDVKKLPVYHVTILVKDQKGLRNLYEI 596

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +SR  L +   ++ RI  S L ++  EGLI+ +    G + RA   N  +   + ++ F 
Sbjct: 597  ISRSNL-EFFHRTPRIPKSLLVKM-REGLIIGSACEQGEVFRALVSNLEEKKLEDIINFY 654

Query: 176  KLFGDRLYVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNSLFLS 221
                   Y+ +Q     +              +    ++ +L   +   +VAT +  FL 
Sbjct: 655  D------YLEIQPVGNNEFLIERGEVRSVEELKEINRKIYELGKKYNKLVVATGDVHFLD 708

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
              D     +LMA         KD  R  P ++      ++       EA     E+    
Sbjct: 709  PWDDVYRKILMAGK-----GYKDADRQPPLYFRTTEEMLMEFEYLGEEAA---REVVIEN 760

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
               +      +    E     + +  E ELR   +                     ++RL
Sbjct: 761  PNKIAEIVEDVKPIPEGTFPPVIEGAEEELRRITLEKAHEIYGDPL------PPIVQERL 814

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-- 399
            D ELN I    ++  ++I    +  + ++   VG  RGS   S+ A    IT+++PL   
Sbjct: 815  DRELNAIINNGYAVMYVIAQKLVSKSLQDGYLVG-SRGSVGSSLVATMSGITEVNPLPPH 873

Query: 400  ---------------------------------------FSLLFERFLNPDRMSMPDFDI 420
                                                   F + FE F+  +    PD D+
Sbjct: 874  YVCPKCKHSEFVTDGSFGCGVDMPDKYCPNCGTLMKKDGFDIPFEVFMGFEGDKEPDIDL 933

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  + +    RY +  +G   V +  T G+L  K A   V +  +              
Sbjct: 934  NFSGEYQPIAHRYTEELFGKGHVFRAGTIGTLADKTAYGYVKKYFE-------------- 979

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP-- 538
                                 R        +  ++    G+ R    H  G+++  +   
Sbjct: 980  --------------------ERNLTVHKSEIKRLTMGCTGIKRTTGQHPGGVMVVPKDKS 1019

Query: 539  LSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            +    P+ R   ++    +T           L+K D LG    T+++   D       K+
Sbjct: 1020 IYDFTPIQRPADAEDTDVITTHFDYHSLSGKLLKLDILGHDDPTVIRMLEDLTGVNARKI 1079

Query: 597  DLSLIPFDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
             L         T           L T  GTLG+ +  +  +RQ L   +P   ++++ + 
Sbjct: 1080 PLDDKKTMSLFTSVEALGIDPEELGTPVGTLGLPEFGTKFVRQMLIETRPTTFDELVRIS 1139

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             L                N ++ I      +  ++     +++Y         +  G   
Sbjct: 1140 GLSHG-------TDVWLNNAQDIIREGIATLKEVIAARDDIMLYL--------ISKGMDK 1184

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              +  +   + K      ++          K+G+      +  ++      Y F K+HA 
Sbjct: 1185 KLSFKIMENVRKGKGVTQEEI-----EEMKKHGVPDWFIQSCQKI-----KYMFPKAHAV 1234

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ-------------------- 807
            AY +++++ A+ K +YP  F A   T+  D+                             
Sbjct: 1235 AYVIMAFRIAYFKVYYPEAFYATYFTVRADDFNLDIVLGGKESIKRAIKEIEAKGNNATP 1294

Query: 808  -------------DARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHI 853
                         +     I+     +     + F + +  +   L +++GVG   A+ I
Sbjct: 1295 KEKNLLTVLEVALEMYLRGIKFTNVDLYRSDAEKFLITEEGLLPPLNSLEGVGIQAAKAI 1354

Query: 854  MEASADKPFDSLEDFCSRV 872
             +   +  F S+EDF +R 
Sbjct: 1355 AQERENGKFISIEDFRNRT 1373



 Score = 84.8 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 35/86 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S L+   S   ++ + A     A+AITD   + +  E  + +   G++ I 
Sbjct: 303 VELHLHTQMSTLDAVPSATEVIKRAAEWGHKAVAITDHAVVQAFPEAMEASREYGVKVIY 362

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       +T + +       
Sbjct: 363 GMEGYMVDDGIPIVTGESEASLEGEF 388


>gi|317129167|ref|YP_004095449.1| DNA polymerase III subunit alpha [Bacillus cellulosilyticus DSM 2522]
 gi|315474115|gb|ADU30718.1| DNA polymerase III, alpha subunit [Bacillus cellulosilyticus DSM
            2522]
          Length = 1434

 Score =  217 bits (552), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 171/924 (18%), Positives = 302/924 (32%), Gaps = 207/924 (22%)

Query: 84   KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEG 143
            + T++           ++   T EG + L +LVS  ++ +   +  RI  S L E   +G
Sbjct: 596  EQTSKDDYKKQRPNHCIIFGKTKEGLKNLYKLVSLSHI-NYFYRVPRIPKSVLSE-HRDG 653

Query: 144  LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ--------------RH 189
            L++ +   +G +  A    S +  EK    +        Y+ +Q              R 
Sbjct: 654  LMIGSACDNGEVFDAMMQKSPEEVEKVAEFYD-------YLEVQPPSNYNHLVEKEIIRD 706

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-----TVVSQKD 244
                +    +++ L       +VAT N+ +L+EED     +L+A              K 
Sbjct: 707  ELALKDIIKKIIDLGDKLGKKVVATGNAHYLNEEDAIYRKILIASQGGANPLNRTSLPKV 766

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              R T +                  A E  +      +  +    PI       + +   
Sbjct: 767  HFRSTDEMLSCFSFLPEEK------AKEIVITNTVAVANEIDDIKPIPDDLYTPKIEG-- 818

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               ++E+R  +         +         +    RL+ ELN I    FS  +LI    +
Sbjct: 819  --ADDEMRELSYGRARSIYGE------TLPKIVEDRLEKELNSIISNGFSVIYLISQKLV 870

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------- 399
            + +  +   VG  RGS   S  A    IT+++PL                          
Sbjct: 871  KKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPECHHSVFFDDGSVGSGFDL 929

Query: 400  ----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                              + FE FL      +PD D++F  + +     Y +  +G E V
Sbjct: 930  PDKECEKCGTQYNKDGQDIPFETFLGFKGDKVPDIDLNFSGEYQATAHNYTKELFGEEYV 989

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
             +  T G++  K A   V                            +   DD++ R    
Sbjct: 990  YKAGTIGTVAEKTAYGFV----------------------------KGYEDDNQLRLRGA 1021

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMYRDVRS---DLPVTQF 558
                   +  +     G+ R    H  GI++    L      P+         +   T +
Sbjct: 1022 E------IDRLVSGCTGVKRTTGQHPGGIIVVPDYLDIYDFTPIQYPADDAESEWRTTHY 1075

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL------- 611
            +   I        + L L  L     ++  + Q    +D   IP DD E Y L       
Sbjct: 1076 DFHSIHD------NLLKLDILGHDDPTVIRMLQDLSGIDPKDIPVDDPEVYKLFSGTESL 1129

Query: 612  -------LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR 664
                   +   GT GI +  +  +RQ LE  +P    +++ +  L               
Sbjct: 1130 GVTEEQIMCKTGTYGIPEFGTRFVRQMLEETKPSSFSELVQISGLSHG-------TDVWL 1182

Query: 665  KNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
             N  + I +   ++  ++     +++Y         +  G   S A  +   + K    +
Sbjct: 1183 NNAADLIANGTCVLKDVIGCRDDIMVYL--------IYKGLEHSLAFKIMEFVRKGKGLQ 1234

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
             D     +I    K+G+      +   +      Y F K+HAAAY +++ + A+ K HYP
Sbjct: 1235 ED-----WIEEMKKHGVPDWYIGSCLRI-----KYMFPKAHAAAYVLMAVRIAYFKVHYP 1284

Query: 785  VEFLAASMTLEMDNVE---------KIKKFCQDARQFNIQIMPPS--------------- 820
            + F AA  T+  D+ E          I+K  ++     +   P                 
Sbjct: 1285 ILFYAAYFTVRADDFEIDTMVKGSASIRKRIEEIYAKGLDATPKEKSVVTVLELALEMCE 1344

Query: 821  ----------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
                        +   +F V  + +     AI GVGT  A +I +A  D  F S E+   
Sbjct: 1345 RGMSFKKVDLYKSKATEFIVDGDSLIPPFNAINGVGTNAAINIEKAREDGEFLSKENLRE 1404

Query: 871  RVDSKKLNRRVLESLVFAGALDCF 894
            R    K+ + VLE+L   G L+  
Sbjct: 1405 R---SKITKTVLENLDDHGCLEGI 1425



 Score = 87.9 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS+ S ++   S++  +++      PAIAITD   L +  E        G++ + 
Sbjct: 334 VELHVHSAMSQMDAVTSISKYVEQANKWGHPAIAITDHAVLQAFPEAYSAGKKTGVKILY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           IV 
Sbjct: 394 GVEANLVDDGVPIAYNPVDRDLLDETYIVF 423


>gi|104161981|emb|CAJ75690.1| DNA polymerase III, alpha subunit [uncultured Thermotogales
            bacterium]
          Length = 1428

 Score =  217 bits (552), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 144/938 (15%), Positives = 304/938 (32%), Gaps = 193/938 (20%)

Query: 57   EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            +F Q A   G+Q       +++  + L+      +  P    I +L    +G + L  LV
Sbjct: 575  KFVQLAKKRGVQ-------NVNELEKLRKNQNLDSLKP--FHISILAKNKKGLENLYRLV 625

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFK 175
            +  +         RI  S L ++  EGL++ +   SG + +A+    S+   E+    + 
Sbjct: 626  TASHTK-YFYMKPRIPKSLLADM-REGLLIGSACVSGELSKAYIGGASTDELEEIAKFYD 683

Query: 176  KLFGDRLYVNLQRHRGYDR-------------YRESQVVQLAYTHELPLVATNNSLFLSE 222
                   Y+ +      D                  +  ++     +P+V T +  FL+ 
Sbjct: 684  -------YIEVMPLDNIDTSEGETNMSRETLAKMYREFYKVGKRLNIPVVMTGDVHFLNP 736

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
             D      + A       + +++P +      +   +   IF D     E  ++ +R  +
Sbjct: 737  HDDIFRAAINAAQD--YDNFQNQPSLYLHTTEEMLDKASEIFEDEIIVREVVIDNSRYIA 794

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
             +++   P+  +      +      + E+R  A+   E      ++      +   +RL+
Sbjct: 795  SLIEEVTPVEGKLHPPVIEG----ADEEVRKMAIENAE------SLYGSPLPEIVERRLN 844

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--- 399
             EL  I    ++  +LI    ++ + ++   VG  RGS   S+ A  + IT+++PL    
Sbjct: 845  RELEAIIGHGYAVLYLIAQKMVKKSNEDGYVVG-SRGSVGSSLVANVIGITEVNPLHPHY 903

Query: 400  -------------------------------------FSLLFERFLNPDRMSMPDFDIDF 422
                                                  S+ FE FL  +   +PD D++F
Sbjct: 904  LCPECGKSIFPETDLECGYDLPDMNCPICGKKMSKNGQSIPFETFLGFEGDKVPDIDLNF 963

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              + ++    +++  +G + V +  T  +L  + A   V               +     
Sbjct: 964  SGEYQERAHSFIEELFGRDHVFRAGTISTLAERTAFGFV---------------RAYSEK 1008

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS-- 540
                +                          I++ + G+ R    H  G++I  + +   
Sbjct: 1009 SGRNLRRAEQER-------------------IARGIVGVRRTTGQHPGGLMIVPKDMDVH 1049

Query: 541  QLVPMYRDVRS--DLPVTQFNMKWIEKAGLIKFDFLGLKTL---TLLQKSLDFLAQRGVK 595
               P+           +T      +    L+K D LG        +L+       ++   
Sbjct: 1050 SFTPVQHPANDTKGSTLTTHFAYEVIHDDLVKIDALGHDDPTFIKMLKDITGVDPEKIPM 1109

Query: 596  VDLSLIPFDDH------ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
             D   +           + + L T  GTLGI +  ++ +R  L   +P    +++ +  L
Sbjct: 1110 DDPETLSIFSSLKSLGVKYHELGTDMGTLGIPEFGTTFVRSMLSDTRPSTFGELVRISGL 1169

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
                            N K+ I S    +  ++     ++ Y         +  G    +
Sbjct: 1170 SHG-------TDVWLNNAKDIITSRQASLSNVIACRDDIMNYL--------IARGMEPKD 1214

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            A  +   + K      + +           G  +    +  ++      Y F ++HAAAY
Sbjct: 1215 AFKIMEKVRKGKGLSEEDE-----REVRSCGAPEWFVNSCKKI-----KYLFPRAHAAAY 1264

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK------FCQDARQFNIQIMPPS--- 820
              + Y+ A+ K HYP+ F +   +++    +            ++  +            
Sbjct: 1265 VSMGYRVAYFKVHYPLAFYSTYFSIKGGEFDIDICTSDTNSIKKEIIRLRADQDRNVKDR 1324

Query: 821  ------------------------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                                    + +    F +    +      ++ +G   AR I + 
Sbjct: 1325 AKETLLEVVMEMIYRGFNFLNVDLMKSHPTRFLIEGKSLRIPFNRLQNMGYKAARSIEQE 1384

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
               + F S+ED   R     LN+  +E L   GAL   
Sbjct: 1385 REKRVFSSVEDLVRRTS---LNKTSVEMLRKYGALKGL 1419



 Score = 97.9 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 34/81 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S L+  + +  +++ +      A AITD   + S  EF   A   GI+PI 
Sbjct: 330 VELHLHTKMSALDSVVDVRELVNTLKDWGHEAAAITDHGVVQSIPEFYFAAKKKGIKPIF 389

Query: 72  GCQLDIDMQDNLKMTNQGKTP 92
           G +  +         N  +  
Sbjct: 390 GMEGYMINDSQQISMNLDEED 410


>gi|308068695|ref|YP_003870300.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681]
 gi|305857974|gb|ADM69762.1| DNA polymerase III polC-type (PolIII) [Paenibacillus polymyxa E681]
          Length = 1438

 Score =  216 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 153/906 (16%), Positives = 292/906 (32%), Gaps = 154/906 (16%)

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            + M D L                 +      G + L +LVS  +  +  K+   I  S L
Sbjct: 590  LKMLDRLNDYVGKDLSTVRPFHCCIYALNPIGKKNLYKLVSMSHT-EYFKRVPCIPKSKL 648

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY---VNLQRHRG 191
             E+  +GL++++G   G    A    S + AE+    +   ++    +Y   V  Q   G
Sbjct: 649  SEM-RDGLLIISGCEKGEFFEAVLNKSEEEAEEIAQFYDVLEIQPLTMYMHLVEKQLVSG 707

Query: 192  YDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             D  +    +V ++    + P++AT N  +L   D    D+ +         +  R +  
Sbjct: 708  PDALKTAIRKVCEIGRRLDKPVIATGNVHYLETRDKLYRDITIHGITGFSPLKDIR-KPD 766

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                  +       F    +A E  V+     +   +       +      D      + 
Sbjct: 767  AHLRTTDEMLAEFEFLGEEKAYEVVVKNTSELADRFEELELFPDKLFTPLLDG----ADE 822

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            E+RN             +I      +    RL+ EL  I +  FS  +LI    ++ + K
Sbjct: 823  EIRNTCYE------TAKSIYGEELPEVVVARLEKELEPIIKYGFSANYLISERLVKKSNK 876

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFS---------------------------- 401
            +   VG  RGS   SV A  L I++++PL                               
Sbjct: 877  DGYLVG-SRGSVGSSVVATFLGISEVNPLPAHYICGNPDCRHSEWILDGSVPSGFDLPDK 935

Query: 402  ---------------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  + +     Y +  +G + V + 
Sbjct: 936  NCPNCGGKLKGEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPVAHNYTKVLFGEKSVFRA 995

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A     +  +                                  A     
Sbjct: 996  GTIGTVAEKTAFGFAKKYEE----------------------------------AHHKKW 1021

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL--SQLVPMYRDVRSDLPVTQFNMKWIE 564
                L  ++    G+ R    H  GIV+    +    + P+      D   +++     +
Sbjct: 1022 RGAELNRLASGCTGVKRSTGQHPGGIVVVPDYIEVEDITPVQYPA--DDTSSEWKTTHFD 1079

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--Q 622
                   + L L  L     ++  + Q    VD + IP +D +   +  +   LG+   Q
Sbjct: 1080 YHAFD-ANLLKLDILGHDDPTMMRMLQDLTGVDPTTIPMNDPKVMSMFNSTEALGVTPQQ 1138

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
            + +      +  M    +  +  LV        D + +          + +   LI    
Sbjct: 1139 IRTPVATYGVPEMGTKFVRQM--LVESQPSSFADLLQISGLSHGTGVWLGNAQELIKNNT 1196

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
               + VI  ++ +M      +G     A  +  ++ K      +     +I    K  + 
Sbjct: 1197 CNIKTVIGCRDDIMLFLIYKAGMDAGLAFKITESVRKGKGLSAE-----WIEEMKKCKVP 1251

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL-------- 794
            +    +  ++      Y F K+HAAAY + + +TA+ K ++P+E+ A   ++        
Sbjct: 1252 QWYIDSCLKI-----QYMFPKAHAAAYVISAVRTAYFKLYHPIEYYATYFSVRAADFDIE 1306

Query: 795  -EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV-------------------------DF 828
                  + I +   +  Q   Q  P       +                          F
Sbjct: 1307 LCCQGYDAIARKIVEIEQLGFQAPPKEKGMLPILEMALEMTARGFSFKSIDLYRSEATRF 1366

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            KV  + +     A++G+G   AR+I  +     F S+EDF  +    K ++ ++E L   
Sbjct: 1367 KVDGDSLIPPFGALQGIGDNAARNIAASREQGEFLSVEDFQQK---SKASKTIVEMLSQM 1423

Query: 889  GALDCF 894
            G     
Sbjct: 1424 GCFRGL 1429



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 31/69 (44%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+  S ++   S++  +   A     AIA+TD   +    + ++ A   GI+ I 
Sbjct: 335 VEFHLHTKMSAMDAVASIDQYVKTAAKWGHKAIAVTDHGGVQCYPDAAKAAKKNGIKMIY 394

Query: 72  GCQLDIDMQ 80
           G + ++   
Sbjct: 395 GIEANVVND 403


>gi|225018411|ref|ZP_03707603.1| hypothetical protein CLOSTMETH_02358 [Clostridium methylpentosum DSM
            5476]
 gi|224948829|gb|EEG30038.1| hypothetical protein CLOSTMETH_02358 [Clostridium methylpentosum DSM
            5476]
          Length = 1453

 Score =  216 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 152/904 (16%), Positives = 286/904 (31%), Gaps = 187/904 (20%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                 ++LV    G + L +LVS  +L +   +  R+  S L +   EGL++ +   +G 
Sbjct: 622  RTYHQIILVKNNTGLKNLYKLVSYGHL-NYFYKKPRVLKSDLVK-HREGLLIGSACEAGE 679

Query: 155  IDRAFFFNS-SQVAEKRLLTFKKLFGDRLYVNLQRHRG----------YDRYR----ESQ 199
            + +A       +   K    +        Y+ +Q               D  R       
Sbjct: 680  LYQAVADGKSWEDLCKIADFYD-------YLEIQPIGNNAFMIRSGLVPDEERLKEYNRT 732

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +V+L      P+VAT +  F    D     ++MA         +    +     +     
Sbjct: 733  IVKLGEHLGKPVVATCDVHFQDAADANYRAIIMAALKFKDADNQAPLYLRTTDEMLKEFA 792

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
             +         + NT +IA      L           +       +  E +L+       
Sbjct: 793  YLGEEKAYEVVVTNTNKIADMVEGDL-------RPIPKGTYTPKIEGAEEDLQRITWQRA 845

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
            +              +  + RLD EL+ I +  FS  ++I    +  ++ N   VG  RG
Sbjct: 846  KDMYGDPV------PELVKNRLDRELSSIIKHGFSVLYMIAQKLVYESESNGYLVG-SRG 898

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   S  A    I++++PL                                         
Sbjct: 899  SVGSSFVATMAGISEVNPLPPHYACPNCKHSEFITDGSVGSGFDLPPKDCPHCGTFMNRD 958

Query: 400  -FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               + FE FL  D    PD D++F  + +    RY +  +G + V +  T  ++  K A 
Sbjct: 959  GHDIPFETFLGFDGDKAPDIDLNFSGEYQSSAHRYTEELFGKDHVFKAGTISTVAEKTAY 1018

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
                + L+     V +                        R               ++  
Sbjct: 1019 GYALKYLEEREKTVHKA--------------------EELRL--------------ARGC 1044

Query: 519  EGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDF 573
            EG+ R    H  G+V    D  +    P+         D+  T F+   +    ++K D 
Sbjct: 1045 EGIKRTTGQHPGGMVVVPSDYEVYDFTPVQHPADDANSDIITTHFDFHSLHDT-ILKLDE 1103

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQLE 624
            LG    TL +   D    + + +  S        T           + +  GTL + ++ 
Sbjct: 1104 LGHDVPTLYKHLEDLTGTKVLDIPTSDEKVISLFTSTEALGVTPEQIYSKTGTLSLPEMG 1163

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            +  +RQ L   QP C  D++ +  L          V+ N              +      
Sbjct: 1164 TPFVRQMLLDSQPKCFSDLLQISGLSH-----GTDVWLNNAQ----------DLIKNGTC 1208

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T   +I     +    L  G     A  +     K    +     E  I    ++G+ + 
Sbjct: 1209 TISEVIGTRDNIMTYLLHKGLEPKMAFKIMEITRKGKAPK--LLTEEHIQAMKEHGVPQW 1266

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---- 800
               +  ++      Y F K+HAAAY + + +  W K + P+E+ AA  T+   + +    
Sbjct: 1267 YVDSCMKI-----KYMFPKAHAAAYVIAAIRLGWYKVYRPLEYYAAFFTVRGGDFDVETT 1321

Query: 801  -----------------------------KIKKFCQDARQFNIQIMPPSVNT-PCVDFKV 830
                                                +     ++ +P  +     V + +
Sbjct: 1322 MRGQGSVAMKLEELKAKGNDRSQKESDTFDTLLIINEMLCRGLEFLPVDLYKSHAVKYTI 1381

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             D +I     ++KG+G   AR++ EA     + S+++  +R     +++ V+E+L  AG 
Sbjct: 1382 EDGKIRLPFNSLKGLGEAAARNLQEAGEQGEYISVDEVSTR---SGVSKSVIETLEEAGV 1438

Query: 891  LDCF 894
                
Sbjct: 1439 FGDM 1442



 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 5/91 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK---ACAAG-- 66
           V L +H++ S ++       ++         AIAITD   + +  +          +G  
Sbjct: 344 VELHLHTNMSAMDALTPAGKLIKTAYNWGHKAIAITDHGVVQAFPDAMNAVDDIRRSGGE 403

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
            + I G +          +  + K P     
Sbjct: 404 FKIIYGLESYFCDDCVAAVYGREKQPLEGEF 434


>gi|330686382|gb|EGG97983.1| nucleic acid-binding domain protein [Staphylococcus epidermidis
            VCU121]
          Length = 393

 Score =  216 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 140/290 (48%), Gaps = 15/290 (5%)

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            ++  IF+L+ KFADYGF ++HA +Y+ I+Y  +++K HYP  F A  ++  + + +K   
Sbjct: 1    MSKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPNYFYANILSNVIGSEKKTAA 60

Query: 805  FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFD 863
               +A+  +I I+PP++N     +K   + IY SL AIKG G  + + I++    +  F 
Sbjct: 61   MIDEAKHQSITILPPNINESHWFYKATSDGIYLSLGAIKGAGYQSVKLIVDERYQNGDFK 120

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
               DF  R+  +   R++LESL+  GA D FG +R  LL S+D +      +E++     
Sbjct: 121  DFFDFARRLPKRVKTRKLLESLILVGAFDIFGKNRATLLHSIDQVIDQVTDIEQDDM--- 177

Query: 924  ENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGY 983
              +F      F+ K + E+       +  E E+  LGFY S HP++       K      
Sbjct: 178  --LFDF----FTPKQSYEEKEELPDQLISEYEKEYLGFYISKHPVE---KEFNKKQYLTI 228

Query: 984  EESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +         I +       ++ +T+ G  + +VT ++     +   FP
Sbjct: 229  YKLSNAKNHQPILV--QFDQIKRIRTKNGQNMAFVTLNDGIHLLDGVIFP 276


>gi|257887081|ref|ZP_05666734.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733]
 gi|257895646|ref|ZP_05675299.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|293377743|ref|ZP_06623932.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium PC4.1]
 gi|257823135|gb|EEV50067.1| DNA polymerase III PolC [Enterococcus faecium 1,141,733]
 gi|257832211|gb|EEV58632.1| DNA polymerase III alpha subunit [Enterococcus faecium Com12]
 gi|292643743|gb|EFF61864.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium PC4.1]
          Length = 1450

 Score =  216 bits (550), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 138/894 (15%), Positives = 283/894 (31%), Gaps = 151/894 (16%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
              Q N  +             + +L     G + L +L+S    ++  ++  RI  S L+
Sbjct: 597  HDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLISMSN-VEYFERVPRIPRSQLK 655

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NLQRHR 190
            ++  E L++ +    G I  A      + A  R   +   ++    +Y       L ++ 
Sbjct: 656  KM-RENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYAPLIEQELVKNE 714

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                     +V++  + +  +VAT N  +L+EED     +L+                  
Sbjct: 715  HDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDAIYRKILINSMGGA-NPLNRHSLPDV 773

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                 +       F     A E  V+   + + I +   P+       +        E+E
Sbjct: 774  HFRTTDEMLTAFHFLGEETAKEIVVDNTNKIADICEEVIPVKDELYTPKIPG----SEDE 829

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            +   +    +              +  ++RL+ ELN I    FS  +LI    +  + ++
Sbjct: 830  ISELSYTKAKQMYGDPL------PEIIQKRLEKELNSINGNGFSVIYLIAQKLVHKSNED 883

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------- 399
               VG  RGS   S  A    IT+++PL                                
Sbjct: 884  GYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGSGFDMPEKQCP 942

Query: 400  ----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                        + FE FL      +PD D++F  D + E   Y +  +G + V +  T 
Sbjct: 943  KCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEDYVYRAGTI 1002

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G++  K A   V +  +   +   R  +                                
Sbjct: 1003 GTVADKTAYGYV-KGYERDNNLQFRSAE-------------------------------- 1029

Query: 510  RLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIE 564
             +  +++   G+ R    H  GI+       +    P+         +   T F+   I 
Sbjct: 1030 -VDRLAKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQNSEWKTTHFDFHSIH 1088

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
                   + L L  L     ++  + Q    +D   IP DD E   +      LG+ Q  
Sbjct: 1089 D------NVLKLDILGHDDPTVIRMLQDLSGIDPQTIPTDDPEVMRIFAGPEVLGVTQ-- 1140

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH-PLIDPMLK 683
                 +      P+     +  +           ++  +  +    +   +   +     
Sbjct: 1141 EQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDVWLGNAEELIRRGD 1200

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T   +I     + +  + +G     A  +   + K    ++  +       A K     
Sbjct: 1201 ATLAEVIGCRDDIMVYLIHAGLDSGMAFKIMETVRKGQWNKIPDELRETYLSAMKENNVP 1260

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
               ++    +     Y F K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + + 
Sbjct: 1261 DWYIDSCSKI----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAYFSVRADDFDLVS 1316

Query: 804  K---------------------------------FCQDARQFNIQIMPPSVNTPCV-DFK 829
                                                 +  +   +     +      +F 
Sbjct: 1317 MCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLELANEMLERGFKFGMIDLYKSDAVNFV 1376

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            +  + +     A+  +GT  A+ I+EA  D PF S ED  +R    K+++ ++E
Sbjct: 1377 IEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLSKEDLATR---GKVSKTLIE 1427



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS+ S ++   S+++++ +       AIAITD     +  E       AG++ + 
Sbjct: 339 VELHVHSNMSTMDATNSISDLVAQAGKWGHRAIAITDHGGAQAFPEAHSAGKKAGVKILY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           +V 
Sbjct: 399 GVEANVVDDGVPIAYNDAHEALNEATYVVF 428


>gi|257898236|ref|ZP_05677889.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
 gi|257836148|gb|EEV61222.1| DNA polymerase III alpha subunit [Enterococcus faecium Com15]
          Length = 1450

 Score =  216 bits (550), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 138/894 (15%), Positives = 283/894 (31%), Gaps = 151/894 (16%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
              Q N  +             + +L     G + L +L+S    ++  ++  RI  S L+
Sbjct: 597  HDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLISMSN-VEYFERVPRIPRSQLK 655

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NLQRHR 190
            ++  E L++ +    G I  A      + A  R   +   ++    +Y       L ++ 
Sbjct: 656  KM-RENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYAPLIEQELVKNE 714

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                     +V++  + +  +VAT N  +L+EED     +L+                  
Sbjct: 715  HDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDAIYRKILINSMGGA-NPLNRHSLPDV 773

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                 +       F     A E  V+   + + I +   P+       +        E+E
Sbjct: 774  HFRTTDEMLTAFHFLGEETAKEIVVDNTNKIADICEEVIPVKDELYTPKIPG----SEDE 829

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            +   +    +              +  ++RL+ ELN I    FS  +LI    +  + ++
Sbjct: 830  ISELSYTKAKQMYGDPL------PEIIQKRLEKELNSINGNGFSVIYLIAQKLVHKSNED 883

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------- 399
               VG  RGS   S  A    IT+++PL                                
Sbjct: 884  GYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGSGFDMPEKQCP 942

Query: 400  ----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                        + FE FL      +PD D++F  D + E   Y +  +G + V +  T 
Sbjct: 943  KCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEDYVYRAGTI 1002

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G++  K A   V +  +   +   R  +                                
Sbjct: 1003 GTVADKTAYGYV-KGYERDNNLQFRSAE-------------------------------- 1029

Query: 510  RLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIE 564
             +  +++   G+ R    H  GI+       +    P+         +   T F+   I 
Sbjct: 1030 -VDRLAKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQNSEWKTTHFDFHSIH 1088

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
                   + L L  L     ++  + Q    +D   IP DD E   +      LG+ Q  
Sbjct: 1089 D------NVLKLDILGHDDPTVIRMLQDLSGIDPQTIPTDDPEVMRIFAGPEVLGVTQ-- 1140

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH-PLIDPMLK 683
                 +      P+     +  +           ++  +  +    +   +   +     
Sbjct: 1141 EQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDVWLGNAEELIRRGD 1200

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T   +I     + +  + +G     A  +   + K    ++  +       A K     
Sbjct: 1201 ATLAEVIGCRDDIMVYLIHAGLDSGMAFKIMETVRKGQWNKIPDELRETYLSAMKENNVP 1260

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
               ++    +     Y F K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + + 
Sbjct: 1261 DWYIDSCSKI----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAYFSVRADDFDLVS 1316

Query: 804  K---------------------------------FCQDARQFNIQIMPPSVNTPCV-DFK 829
                                                 +  +   +     +      +F 
Sbjct: 1317 MCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLELANEMLERGYKFGMIDLYKSDAVNFV 1376

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            +  + +     A+  +GT  A+ I+EA  D PF S ED  +R    K+++ ++E
Sbjct: 1377 IEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLSKEDLATR---GKVSKTLIE 1427



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS+ S ++   S+++++ +       AIAITD     +  E       AG++ + 
Sbjct: 339 VELHVHSNMSTMDATNSISDLVAQAGKWGHRAIAITDHGGAQAFPEAHSAGKKAGVKILY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           +V 
Sbjct: 399 GVEANVVDDGVPIAYNDAHEALNEATYVVF 428


>gi|269120698|ref|YP_003308875.1| DNA polymerase III subunit alpha [Sebaldella termitidis ATCC 33386]
 gi|268614576|gb|ACZ08944.1| DNA polymerase III, alpha subunit [Sebaldella termitidis ATCC 33386]
          Length = 1421

 Score =  216 bits (550), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 156/888 (17%), Positives = 310/888 (34%), Gaps = 181/888 (20%)

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS----SGPID 156
            +LV   EG + L EL+SR +L   G++  RI  S L+E     LI  +  S     G + 
Sbjct: 590  ILVKNREGLKDLYELISRSHLDFFGERKPRIPKSMLKEKREHLLIASSANSVFRNDGELV 649

Query: 157  RAFFFN-SSQVAEKRLLTF--KKLFGDRLYVNLQRHRGYDR-----YRESQVVQLAYTHE 208
            RA+    S    E+R   +   ++     Y+ +  +   +             +L     
Sbjct: 650  RAYLRGMSKDEIEERADFYDYIEIHPAANYIEMVNNGEMESLDIAMEMNKYFYELGKKTG 709

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
              +VAT ++ +L  E++E+ +  + +  S +  +  +          +       F    
Sbjct: 710  KIVVATGDAHYL--EEWESVNRSVLILGSGMGHRSFKHDRKLYFRTTDEMLDAFAFLGEK 767

Query: 269  EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAI 328
            EA E  +E   + + +++   PI   F   + +      E E+R       +    +   
Sbjct: 768  EAYEVVIENTNKLADMIERLKPIPDGFYPPKIEG----AEEEVREMTYNRAKKLYGENL- 822

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
                  +   +R++ EL  I    F+  +LI    ++ +  N   VG  RGS   S+ AY
Sbjct: 823  -----PEILEKRIEHELEAIIGNGFAVLYLIAQKLVKKSLDNGYLVG-SRGSVGSSIVAY 876

Query: 389  ALTITDIDPLR-----------------------------------------FSLLFERF 407
             + IT+++ +                                           S+ FE F
Sbjct: 877  MMEITEVNAMYPHYRCPNPECKHSEFTDMAGSGVDLPDKNCPKCGTKYIKDGHSIPFEVF 936

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            +      +PD D++F  + + E+ RY +  +G + V +  T  +L  + A   V +  + 
Sbjct: 937  MGFKGDKVPDIDLNFSGEYQSEIHRYTEELFGKDHVFRAGTISTLAERNAFGYVKKYFEE 996

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
                                                       +  I++  EG  +    
Sbjct: 997  S----------------------------------GIHKRKAEIERIAKGCEGARKTTGQ 1022

Query: 528  HAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            H  G++    D+ + +  P+ +       +   T F+   +++  L+K D LG    T L
Sbjct: 1023 HPGGMIVLPSDKSIYEFTPIQKPANDKTAESITTHFDYHVMDE-QLVKLDILGHDDPTTL 1081

Query: 583  QKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ--------------LESSGM 628
            +     + Q    +D+  IP DD +   +  +   LG+ Q                +  +
Sbjct: 1082 R-----ILQDLTGIDIYQIPLDDPKVLSIFNSTEALGVTQKDIGSVIGSFGIPEFGTKFV 1136

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            R+ L   +P    +++ +  L                N ++ + +    +  ++     +
Sbjct: 1137 REMLIETKPSSFAELVRISGLSHG-------TDVWLNNAQDYVKAGITTLSEVITVRDDI 1189

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            + Y            G   S A  +   + K    +  ++ E +     +  I +    +
Sbjct: 1190 MNYLID--------HGLDKSLAFTIMEFVRKGQPSKNKEKWEEYAKAMKEKNIKEWYIES 1241

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ- 807
              ++      Y F K HA AY +++ + A+ K +YP+EF  A +  ++D     K + + 
Sbjct: 1242 CEKI-----KYMFPKGHAVAYVMMAVRIAYFKVYYPLEFYTAFLNRKVDGFSVTKMYKKL 1296

Query: 808  -------------------------------DARQFNIQIMPPSVNTPCVD-FKVGDNRI 835
                                           +     I+++P  +       F V D +I
Sbjct: 1297 DELKEARKLLDEKMNLDVKEKGDLTLYEILIEMSHRGIELLPVDIYKSEASLFLVEDGKI 1356

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
               L A+ G+G + A+ ++E      F SLED   R    KLN+ V+E
Sbjct: 1357 RLPLVAVDGLGESVAKKVVEERKISEFISLEDILKRT---KLNKTVVE 1401



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 1/90 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S + G +S  +++++       AIA+TD    +S     + A     + I 
Sbjct: 314 VELHAHTNMSEMSGVVSAKDLINRAVEYGHNAIAVTDYGVAYSFPFAYKAAPK-DFKVIF 372

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G +  +   +   +             I+ 
Sbjct: 373 GVEAYVVDDEQNMVERPKDAMIEQEEYIIF 402


>gi|293570615|ref|ZP_06681666.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium E980]
 gi|291609286|gb|EFF38557.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecium E980]
          Length = 1450

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 138/894 (15%), Positives = 283/894 (31%), Gaps = 151/894 (16%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
              Q N  +             + +L     G + L +L+S    ++  ++  RI  S L+
Sbjct: 597  HDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLISMSN-VEYFERVPRIPRSQLK 655

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NLQRHR 190
            ++  E L++ +    G I  A      + A  R   +   ++    +Y       L ++ 
Sbjct: 656  KM-RENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYAPLIEQELVKNE 714

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                     +V++  + +  +VAT N  +L+EED     +L+                  
Sbjct: 715  HDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEEDAIYRKILINSMGGA-NPLNRHSLPDV 773

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                 +       F     A E  V+   + + I +   P+       +        E+E
Sbjct: 774  HFRTTDEMLTAFHFLGEETAKEIVVDNTNKIADICEEVIPVKDELYTPKIPG----SEDE 829

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            +   +    +              +  ++RL+ ELN I    FS  +LI    +  + ++
Sbjct: 830  ISELSYTKAKQMYGDPL------PEIIQKRLEKELNSINGNGFSVIYLIAQKLVHKSNED 883

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------- 399
               VG  RGS   S  A    IT+++PL                                
Sbjct: 884  GYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGSGFDMPEKQCP 942

Query: 400  ----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                        + FE FL      +PD D++F  D + E   Y +  +G + V +  T 
Sbjct: 943  KCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEDYVYRAGTI 1002

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G++  K A   V +  +   +   R  +                                
Sbjct: 1003 GTVADKTAYGYV-KGYERDNNLQFRSAE-------------------------------- 1029

Query: 510  RLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIE 564
             +  +++   G+ R    H  GI+       +    P+         +   T F+   I 
Sbjct: 1030 -VDRLAKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQNSEWKTTHFDFHSIH 1088

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
                   + L L  L     ++  + Q    +D   IP DD E   +      LG+ Q  
Sbjct: 1089 D------NVLKLDILGHDDPTVIRMLQDLSGIDPQTIPTDDPEVMRIFAGPEVLGVTQ-- 1140

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH-PLIDPMLK 683
                 +      P+     +  +           ++  +  +    +   +   +     
Sbjct: 1141 EQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDVWLGNAEELIRRGD 1200

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T   +I     + +  + +G     A  +   + K    ++  +       A K     
Sbjct: 1201 ATLAEVIGCRDDIMVYLIHAGLDSGMAFKIMETVRKGQWNKIPDELRETYLSAMKENNVP 1260

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
               ++    +     Y F K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + + 
Sbjct: 1261 DWYIDSCSKI----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAYFSVRADDFDLVS 1316

Query: 804  K---------------------------------FCQDARQFNIQIMPPSVNTPCV-DFK 829
                                                 +  +   +     +      +F 
Sbjct: 1317 MCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLELANEMLERGFKFGMIDLYKSDAVNFV 1376

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            +  + +     A+  +GT  A+ I+EA  D PF S ED  +R    K+++ ++E
Sbjct: 1377 IEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLSKEDLATR---GKVSKTLIE 1427



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS+ S ++   S+++++ +       AIAITD     +  E       AG++ + 
Sbjct: 339 VELHVHSNMSTMDATNSISDLVAQAGKWGHRAIAITDHGGAQAFPEAHSAGKKAGVKILY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           +V 
Sbjct: 399 GVEANVVDDGVPIAYNDAHEALNEATYVVF 428


>gi|307298437|ref|ZP_07578240.1| DNA polymerase III, alpha subunit [Thermotogales bacterium
            mesG1.Ag.4.2]
 gi|306915602|gb|EFN45986.1| DNA polymerase III, alpha subunit [Thermotogales bacterium
            mesG1.Ag.4.2]
          Length = 1412

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 151/939 (16%), Positives = 312/939 (33%), Gaps = 195/939 (20%)

Query: 57   EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIEL 115
            +F Q+A   G          ++  + L+   + +      P  I +L    +G + L +L
Sbjct: 559  KFLQQAKKRG----------VEKVNELEKLRKNQNLDSLKPVHISILSKNRKGLENLYKL 608

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-QVAEKRLLTF 174
            V+  +         RI  S L +   EGL++ +   SG + +A+   +S    E+    +
Sbjct: 609  VTASHTK-YFYMKPRIPKSLLTDF-REGLLIGSACISGELSKAYIGGASVDELEEIAKFY 666

Query: 175  KKLFGDRLYVNLQRHRGYDR-------------YRESQVVQLAYTHELPLVATNNSLFLS 221
                    Y+ +      D                  +  ++     +P+V T +  F++
Sbjct: 667  D-------YIEVMPLDNIDTSEGETSMSKETLIKMYREFYKVGKKLNIPVVMTGDVHFVN 719

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
              D      + A       + +++P +      +   + + IF D   A E  V+ +R  
Sbjct: 720  PHDDIYRAAINAAQD--YDNFQNQPSLYLHTTEEMIGKALEIFEDEGIAKEIVVDNSRLI 777

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            +  ++   PI  +      +      + E+R  A+   E    +             +RL
Sbjct: 778  ASQIENVVPIEGKLHPPVIEG----ADEEVRKMAIENAERLYGKPL------PDIVEKRL 827

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-- 399
            + EL  I    ++  +LI    ++ + ++   VG  RGS   S+ A  + IT+++PL   
Sbjct: 828  NRELEAIIGHGYAVLYLIAQKMVKKSNEDGYVVG-SRGSVGSSLVANVIGITEVNPLPPH 886

Query: 400  --------------------------------------FSLLFERFLNPDRMSMPDFDID 421
                                                   S+ FE FL  +   +PD D++
Sbjct: 887  YLCPECGKSVFPETDLESGYDLPAMKCPGCGNEMLKNGQSIPFETFLGFEGDKVPDIDLN 946

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  + +++   +++  +G + V +  T  ++  + A   V               +    
Sbjct: 947  FSGEYQEKAHSFIEELFGRDHVFRAGTISTVAERTAFGFV---------------RAYSE 991

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS- 540
                 +                          I++ + G+ R    H  G++I  + +  
Sbjct: 992  KSGKTLRRAEQER-------------------IARGIVGVKRTTGQHPGGLMIVPKDMDV 1032

Query: 541  -QLVPMYRDVRSDL--PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
                P+           +T      +    L+K D LG    T ++   D       K+ 
Sbjct: 1033 HNFTPVQHPANDTKSSILTTHFAYEVIHDDLVKIDALGHDDPTFIKMLKDITGVDPEKIP 1092

Query: 598  LSLIPFDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
            +         +         + L T  GTLGI +  ++ +R  L   +P    +++ +  
Sbjct: 1093 MDDEETLGIFSSLKPLGLRFHELGTDVGTLGIPEFGTTFVRSMLSDTRPSTFGELVRISG 1152

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            L                N K+ I S H  +  ++     ++ Y         +  G    
Sbjct: 1153 LSHG-------TDVWLNNAKDIITSGHASLSQVIACRDDIMNYL--------IGKGMEPK 1197

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            EA  +   + K      + + E         G  +    +  ++      Y F ++HAAA
Sbjct: 1198 EAFKIMEKVRKGKGLSKEDEIEV-----RSCGAPEWFMNSCKKI-----KYLFPRAHAAA 1247

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------KIKKFCQDARQ----------- 811
            Y  + Y+ A+ K H+P+ F +   +++    +       I    ++  +           
Sbjct: 1248 YVSMGYRVAYFKVHFPLAFYSTYFSIKGGEFDIDICTSDINSIKKEIVRLRSDQDRNVKD 1307

Query: 812  ----------FNIQIMPPS------VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                        +++   S      + +    F +  N +   L  ++ +G   AR +  
Sbjct: 1308 RAKETLLEVVMEMKLRGFSFLNVDLMESHPTRFLIEGNSLRIPLNRLQNMGDKAARSVEV 1367

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
                +PF S+ED   R     LN+  +E L   GAL   
Sbjct: 1368 EREKRPFSSVEDLIRRT---ALNKTSVEMLRKYGALKNL 1403



 Score = 98.7 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 3/94 (3%)

Query: 1   LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           +   +EK    V L +H+  S L+  + +N++++ +      A A+TD   + S  EF  
Sbjct: 306 MDNAMEKR---VELHLHTKMSSLDSVVDVNDLVNTLKDWGHDAAAVTDHGVVQSIPEFYF 362

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFP 94
            A   GI+PI G +  +         N  K   P
Sbjct: 363 AAKKKGIKPIFGMEGYMIKDSEQISMNLEKEDSP 396


>gi|257469515|ref|ZP_05633607.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185]
 gi|317063759|ref|ZP_07928244.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185]
 gi|313689435|gb|EFS26270.1| DNA polymerase III alpha subunit [Fusobacterium ulcerans ATCC 49185]
          Length = 1446

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 158/912 (17%), Positives = 309/912 (33%), Gaps = 182/912 (19%)

Query: 93   FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS- 151
                 ++++LV   EG Q +  LVS  ++   G +  R+  S +++   EGLI+ +  S 
Sbjct: 604  KQDTANVIVLVKNLEGLQNMYRLVSEAHVDYYGNKKPRVLKSHIEKY-REGLIIGSSLSS 662

Query: 152  ----SGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYVNLQRHRGYD--------RYRE 197
                 G +   +     +  EK +  +   +L     Y  L    G              
Sbjct: 663  HFMNDGELSNYYMRYDYEKIEKNIDFYDYIELLPRGAYSELYEDDGTGTISSFTMIEDMN 722

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
                 LA      + A++N  +++E D +   +L+  + S   + + +            
Sbjct: 723  KYFYNLAKERGKLVTASSNVHYINENDSKIRSILLYGSGSVYRANQYKTDNKFYFRTTEE 782

Query: 258  SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
                  +     A E  V      + +++V  P+   F   + D      EN ++     
Sbjct: 783  LINEFNYLGEETAKEIVVSGTNAIADMIEVIKPVPDGFYPPKID----NAENIVKEMTYE 838

Query: 318  GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
                             +  + RL+ EL  I    FS  +L     ++ +  N   VG  
Sbjct: 839  KAYRIYGNPL------PEIVKARLERELGAIIGNGFSVLYLSAQKLVKKSLDNGYLVG-S 891

Query: 378  RGSGAGSVTAYALTITDIDPLR-------------------------------------- 399
            RGS   S+ AY + IT+++ L                                       
Sbjct: 892  RGSVGSSLVAYMMDITEVNALYPHYICTNPECKNSEFIEREGVGIDLPEKICPKCGQPYK 951

Query: 400  ---FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
               +S+ FE F+  +   +PD D++F  + + E+ RY +  +G E V +  T  +L  K 
Sbjct: 952  RDGYSIPFEVFMGFNGEKVPDIDLNFSGEYQSEIHRYCEQLFGKENVFKAGTISTLAEKN 1011

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            A   V +  +    + +R                                    ++ +++
Sbjct: 1012 AEGYVRKYFEEHEMKGNRA----------------------------------EIIRLAK 1037

Query: 517  KLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKF 571
            K EG  +    H  G+V+  R   + +  P+ +       D   T F+   +++  L+K 
Sbjct: 1038 KCEGAKKTTGQHPGGMVVVPRDHSIYEFCPVQKPANDEKNDSITTHFDYHVMDE-QLVKL 1096

Query: 572  DFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------T 617
            D LG    T ++     + Q    VD+  IP  D ET  + +                 T
Sbjct: 1097 DILGHDDPTTIK-----MLQEYTGVDIYTIPIADPETLKIFSGTEALGITPDDINSVVGT 1151

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
             G+ +  +  +RQ L    P    +++ +  L   G    +         K         
Sbjct: 1152 FGVPEFGTPFVRQMLIDTMPKTFAELVRISGLSH-GTDVWLNNAQEFIRQK--------- 1201

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
                 K T   +I     +    +  G     A  +   + K    +  +  E+F +   
Sbjct: 1202 -----KATLSQVITVRDDIMNYLIDQGLEKGTAFKIMEFVRKGKPSKDPEGWEKFSNEMK 1256

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            ++ +++    +   +      Y F K HA AY +++ + A+ K HYP+ F AA ++ + +
Sbjct: 1257 EHDVAEWYIESCRRI-----KYMFPKGHAVAYVMMAMRIAYFKVHYPLAFYAAYLSRKAE 1311

Query: 798  NVEK-------------------------------IKKFCQDARQFNIQIMPPSVNTPC- 825
            + +                                I +   +      + +P  V T   
Sbjct: 1312 DFDYEIMSDPKTAKEHLAVLSKEPKLDVKKKAEMAICEIIVEMYARGYEFLPIDVYTSAG 1371

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
              F + D +I   L A+ G+G     ++++      F S ED   R    K+++ ++E L
Sbjct: 1372 FRFTIEDGKIRIPLIALNGLGGAVIENLIKERDISKFLSYEDLKRRT---KISQTIIEKL 1428

Query: 886  VFAGALDCFGYS 897
                A+D    +
Sbjct: 1429 KSINAVDSLSET 1440



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 1/91 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS  S + G   +++++ +  A    A+AITD   + S     + A     + I+
Sbjct: 334 VELHTHSKMSEMVGVEDISDLIKQAIAYGHKAMAITDYAVVHSFPFAYKAAKGKDFKAIL 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           GC++ + + DN +M    K       S V+ 
Sbjct: 394 GCEMYM-VNDNAEMVRSSKDALIEEESFVVF 423


>gi|255103311|ref|ZP_05332288.1| DNA polymerase III subunit alpha [Clostridium difficile QCD-63q42]
          Length = 677

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 128/722 (17%), Positives = 264/722 (36%), Gaps = 75/722 (10%)

Query: 17  HSS--YSL---LEGALSLNNILDKIAADQQPAIAITDTN---NLFSALEFSQKACAAGIQ 68
           HS   YS    L+        +D+     Q     T+     N++   E         ++
Sbjct: 7   HSHKIYSNIRSLDVITKPQQYIDRAIKLGQNTYFTTEHGYQGNVY---EAKTLCDEYKLK 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIG +       N K              ++++    +GY+++ + +S     +     
Sbjct: 64  MIIGAEFYYVNDINEK--------DRGNYHLIVIAKNNDGYKQINKALSLAN-KNGYYYK 114

Query: 129 VRICLSWLQEIGTEG-LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
            RI    L EI   G +++ T   +G +         +  E+ +L  K  F +  ++ +Q
Sbjct: 115 PRIDEKILFEIFKPGDVVITTACVAGIL-------KLENREELILKLKNYFKNNFFLEVQ 167

Query: 188 RHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
            H    +      V++L+  + + ++  N+S ++  E+ +     +              
Sbjct: 168 SHPHKTQALHNKDVLELSNKYNIDIIHANDSHYIYPEESKYRTKFL-----KAKGINYPE 222

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                    N  ++   +       +  VE A + + I      I     + +   I K 
Sbjct: 223 EDGFILDYPNSEDIFKRYEKQNVLTKQEVERALKNTLIFDECEEITLINDDIKLPSISKN 282

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              EL+       +  L +          +Y   + +E ++I +     YF+I    +Q 
Sbjct: 283 PNKELKEIL---NKEWLEKRKNIPKNRWNEYLDAIRYEFDIIEKTHMEDYFIIDYKIVQR 339

Query: 367 AKKNNI--PVGPGRGSGAGSVTAYALTITDID------PLRFSLLFERFLNPDRMSMPDF 418
           AK+         GRGS    +    L +T+ID      PL  +            S+PD 
Sbjct: 340 AKQEYNGLLTKTGRGSAPSFIITNLLGLTEIDRLNAPVPLFPTRFMSVERILSAKSLPDI 399

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D++      +  I+  ++  G E  A +I++  LQ  +A R   +A  M  S+ D + K 
Sbjct: 400 DLNAEDA--EPFIQATRDLLGEENCAWMISYKPLQDASAFRLWCKANDMKLSEYDEVAKN 457

Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP 538
           +                         D     +++ S+   G+    S     ++I DRP
Sbjct: 458 LDK--------------------YTNDVFWKDVIKESKVFVGVVESVSFSPCSMLIYDRP 497

Query: 539 LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
           + + V + +    D      +  + +K   +K D+L +K  +L++K+ +        ++ 
Sbjct: 498 IDEEVGLLK--TKDGVCCNIDGYYCDKYKYLKNDYLTVKVWSLIRKTCELANISIPTIE- 554

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            L    D +TY +   K T  I Q++S          +   + +  A V+  RPG    +
Sbjct: 555 ELNILLDAKTYDIYKDKLTCTINQVDSDYATNLASKYKISSVAETSAFVASIRPGFASLL 614

Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             + NR++    +      +D +L+++   ++YQE +M+   +  G   SE+  +   + 
Sbjct: 615 DNFINRESYTTNV----KELDILLEDSYHYLMYQESIMKYL-IWLGIEESESYDIINKIK 669

Query: 719 KK 720
           K+
Sbjct: 670 KR 671


>gi|310779125|ref|YP_003967458.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926]
 gi|309748448|gb|ADO83110.1| DNA polymerase III, alpha subunit [Ilyobacter polytropus DSM 2926]
          Length = 1442

 Score =  215 bits (548), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 155/937 (16%), Positives = 306/937 (32%), Gaps = 197/937 (21%)

Query: 81   DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIG 140
            + L              +++LLV    G + L +LVS  ++   G +  RI  S ++E  
Sbjct: 588  NELDKVFPVNIKKQDTSNVMLLVKNNTGLKNLYKLVSEAHINYYGSKKPRIPRSIIEE-N 646

Query: 141  TEGLIMLTG-----GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY 195
             EG+I+        G+ G +  A+F  +    ++++  +        Y+ LQ    Y   
Sbjct: 647  REGIIIGAAMSMHFGNEGELASAYFRYNLDCIDEKINFYD-------YIELQPRETYTEL 699

Query: 196  RESQ-----------------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
             E +                 + +LA +    ++AT+N  +L EED+    +L+  + S 
Sbjct: 700  YEKEGTGTISSFDNIEKANKSLYKLAKSKGKKVIATSNVHYLDEEDHRVRSILLYGSGSV 759

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
               ++            N       +     A E  +E     +  ++   P+   F   
Sbjct: 760  FREKQYNSDNKFYFRSTNEMLREFSYLGEDVAREIVIESTNAIADEVEKIQPVPSGFFPP 819

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
            + D      E  ++                      +   QRL+ EL  I    FS  +L
Sbjct: 820  KID----NAEEIVKEMTYNKAYKIYGNPL------PEIVAQRLERELKAIVGNGFSVLYL 869

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 ++ +  N   VG  RGS   S+ A+ + IT+++ L                    
Sbjct: 870  SAQKLVKESLDNGYLVG-SRGSVGSSLVAFMMDITEVNALYPHYICVDENCRYSEFMDKE 928

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                   ++ FE F+  +   +PD D++F  + + E+ RY +  
Sbjct: 929  GAGVDLPDKICPKCGKELKKEGHAIPFEVFMGFNGDKVPDIDLNFSGEYQSEIHRYCERL 988

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E V +  T  +L  K A   V +  +                               
Sbjct: 989  FGKENVFKAGTISTLAEKNAYGYVKKYFE------------------------------- 1017

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---D 552
                         ++ +++K EG  +    H  G+++      + +  P+ +       +
Sbjct: 1018 ---EHNISVRNAEIIRLAKKCEGAKKTTGQHPGGMIVVPQGHSIYEFCPVQKPANDAKNE 1074

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T F+   +++  L+K D LG    T ++     L Q    VD+  +P  D ET  + 
Sbjct: 1075 SITTHFDYHVMDE-QLVKLDILGHDDPTTIK-----LLQEYTGVDIYDVPLADPETLKIF 1128

Query: 613  TTKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            +                 T G+ +  +  +RQ L    P    +++ +  L         
Sbjct: 1129 SGTESLGVTPDQINSVIGTYGVPEFGTQFVRQMLVDTMPTTFAELVRISGLSH-----GT 1183

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
             V+ N                   + T   II     +    + SG     A  +   + 
Sbjct: 1184 DVWLNNAQ----------EFVRKGEATLSEIISVRDDIMNYLIDSGIEKGTAFKIMEFVR 1233

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K    +     + +     ++ +      +   +      Y F K HA AY  ++ + A+
Sbjct: 1234 KGRPSKEADAWKDYSKLMKEHNVPDWYIESCRRI-----KYMFPKGHAVAYVTMAMRIAY 1288

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKF-------------------------------CQ 807
             K H+P+ F AA ++ + D+ +                                      
Sbjct: 1289 FKVHHPLAFYAAYLSRKADDFDSEFMLSLNSVKEKIDELSKEMKLDVRQKSQLAVSEIIL 1348

Query: 808  DARQFNIQIMPPSVNTPC-VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            +      + +   +       F + D++I   L A+ G+G     ++++      F S E
Sbjct: 1349 EMHARGFEFLGIDIYKSDGFKFTIEDDKIRIPLVALNGLGGAVVENVIKEREIGKFLSYE 1408

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQLL 902
            D   R    K ++ V+E L    A+D     ++  L 
Sbjct: 1409 DLKRRT---KASQTVIEKLKIVNAIDGLSDTNQKSLF 1442



 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-SQKACAAGIQPI 70
           V L  H+  S + G++   N++ +       A+A+TD   + S   F  + A  + ++ I
Sbjct: 329 VELHTHTKMSDMVGSIDAKNLVKRALKYGHKALAVTDYGGVHSFP-FVYKAAKGSDLKVI 387

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
            GC   +       + N           +V
Sbjct: 388 FGCDAYMVDDSRPMVENPKDVLIQDETYVV 417


>gi|12045116|ref|NP_072927.1| DNA polymerase III, alpha subunit [Mycoplasma genitalium G37]
 gi|255660357|ref|ZP_05405766.1| DNA polymerase III, alpha subunit [Mycoplasma genitalium G37]
 gi|2494193|sp|Q49405|DPO3A_MYCGE RecName: Full=DNA polymerase III subunit alpha
 gi|1045954|gb|AAC71482.1| DNA polymerase III, alpha subunit [Mycoplasma genitalium G37]
 gi|166078627|gb|ABY79245.1| DNA polymerase III, alpha subunit [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 874

 Score =  215 bits (547), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 188/576 (32%), Positives = 305/576 (52%), Gaps = 13/576 (2%)

Query: 330 KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
           +  + + Y+ RL+ ELNVI ++ F+ YFL+V D + +A K +I +G GRGS  GS+ A+ 
Sbjct: 266 QDLNKKAYQLRLEKELNVINKLNFASYFLVVNDLVNYAFKKDILIGSGRGSAVGSLVAFL 325

Query: 390 LTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
           L IT IDP++  L+FERF++  R  +PD DID  +++R E+I Y+  KYG E  AQI+TF
Sbjct: 326 LNITKIDPVQHQLIFERFISTHRQDLPDIDIDIMENKRAEMINYLFEKYGKENCAQIVTF 385

Query: 450 GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
              + ++A+++V +     Y   D +  ++P D     +     +DS  +        + 
Sbjct: 386 QRFKTRSAVKEVAKLFN-DYGISDMILGVLPKDQTITFTDLKATEDSALQLCLQQFGLIV 444

Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
            L   +  +    R +S HA+GIVI    L + +P+ +   +       +M+W+    L 
Sbjct: 445 EL---ALAIVDFPRQSSIHASGIVIASNSLIKTIPLLQLDNNHFLTQV-SMEWLSFFNLN 500

Query: 570 KFDFLGLKTLTLLQKSLDFLA--QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
           KFD LGL  LT++   +  +    + V   L+ I + D  T+  L  + TLGIFQLES G
Sbjct: 501 KFDLLGLINLTMISDVITQIKPSNQTVNQFLNTISWTDQNTFINLVNEDTLGIFQLESFG 560

Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
           M++ L  ++P  I  +  +++LYRPG  DNI ++ NR +       I P I P++K T G
Sbjct: 561 MKKLLVQIKPKTINQLAIVLALYRPGAQDNINLFINRLHNGYDQSDIDPRILPIVKNTYG 620

Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
           V+I+QEQ++ I ++++ YSL EAD  RRA+ KK  + + K K  F   A +N        
Sbjct: 621 VLIFQEQIINIVKVVANYSLEEADSFRRAISKKDVKLIQKNKRNFFERAVQNNFDLKTTT 680

Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ 807
            IF  + +FA+YGFN SHA  YA++SY TAW+KT+YPV F    +     + +K K   +
Sbjct: 681 KIFSYIERFANYGFNLSHALGYALLSYWTAWLKTNYPVYFYLWLLNHFQSSKDKQKLIIR 740

Query: 808 DARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH------IMEASADKP 861
              +  I+I PP +N    +  + + +IY  L  IKG+     ++      +++   +  
Sbjct: 741 TLEKSGIEIYPPLLNKAQPNSVIENKKIYLGLNLIKGINDRYIQNLQKVQHLIQTQNNLQ 800

Query: 862 FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
              +  +C       +  + L  L   G  D F Y+
Sbjct: 801 LTDVVSWCLDKTIGDIPLKDLLLLKTMGCFDFFEYT 836



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 14/105 (13%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV+L  +S Y+ L  ALS   +++    DQQ A+AITD  NLF A+EF        I+PI
Sbjct: 2   FVNLHTNSYYNFLNSALSPKKLVNLAINDQQKAVAITDP-NLFGAVEFFITCKQNNIKPI 60

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
           IG  L ++ Q N                ++L+  + +G+Q L ++
Sbjct: 61  IGLNLTVEYQKNDVK-------------LLLIAKSNKGFQTLNKI 92


>gi|227551758|ref|ZP_03981807.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|227179063|gb|EEI60035.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
          Length = 1450

 Score =  215 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 137/894 (15%), Positives = 284/894 (31%), Gaps = 151/894 (16%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
              Q N  +             + +L     G + L +L+S    ++  ++  RI  S L+
Sbjct: 597  HDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLISMSN-VEYFERVPRIPRSQLK 655

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NLQRHR 190
            ++  E L++ +    G I  A      + A  R   +   ++    +Y       L ++ 
Sbjct: 656  KM-RENLLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYAPLIEQELVKNE 714

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                     +V++  + +  +VAT N  +L+EED   +  ++  +               
Sbjct: 715  HDLEEIIQNLVEIGKSLDKIVVATGNVHYLNEED-VIYRKILINSMGGANPLNRHSLPDV 773

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                 +       F     A E  V+   + + I +   P+       +        E+E
Sbjct: 774  HFRTTDEMLTAFHFLGEETAKEIVVDNTNKIADICEEVIPVKDELYTPKIPG----SEDE 829

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            +   +    +              +  ++RL+ ELN I    FS  +LI    +  + ++
Sbjct: 830  ISELSYTKAKQMYGDPL------PEIIQKRLEKELNSINGNGFSVIYLIAQKLVHKSNED 883

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------- 399
               VG  RGS   S  A    IT+++PL                                
Sbjct: 884  GYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGSGFDMPEKQCP 942

Query: 400  ----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                        + FE FL      +PD D++F  D + E   Y +  +G + V +  T 
Sbjct: 943  KCGARLNKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEDYVYRAGTI 1002

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G++  K A   V +  +   +   R  +                                
Sbjct: 1003 GTVADKTAYGYV-KGYERDNNLQFRSAE-------------------------------- 1029

Query: 510  RLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIE 564
             +  +++   G+ R    H  GI+       +    P+         +   T F+   I 
Sbjct: 1030 -VDRLAKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQNSEWKTTHFDFHSIH 1088

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLE 624
                   + L L  L     ++  + Q    +D   IP DD E   +      LG+ Q  
Sbjct: 1089 D------NVLKLDILGHDDPTVIRMLQDLSGIDPQTIPTDDPEVMRIFAGPEVLGVTQ-- 1140

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH-PLIDPMLK 683
                 +      P+     +  +           ++  +  +    +   +   +     
Sbjct: 1141 EQIYSKTGTLGIPEFGTRFVRGMLEETHPTTFAELLQISGLSHGTDVWLGNAEELIRRGD 1200

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T   +I     + +  + +G     A  +   + K    ++  +       A K     
Sbjct: 1201 ATLAEVIGCRDDIMVYLIHAGLDSGMAFKIMETVRKGQWNKIPDELRETYLSAMKENNVP 1260

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
               ++    +     Y F K+HAAAY +++ + A+ K ++P+ +  A  ++  D+ + + 
Sbjct: 1261 DWYIDSCSKI----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAYFSVRADDFDLVS 1316

Query: 804  K---------------------------------FCQDARQFNIQIMPPSVNTPCV-DFK 829
                                                 +  +   +     +      +F 
Sbjct: 1317 MCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLELANEMLERGFKFGMIDLYKSDAVNFV 1376

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            +  + +     A+  +GT  A+ I+EA  D PF S ED  +R    K+++ ++E
Sbjct: 1377 IEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLSKEDLATR---GKVSKTLIE 1427



 Score = 91.0 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS+ S ++   S+++++ +       AIAITD     +  E       AG++ + 
Sbjct: 339 VELHVHSNMSTMDATNSISDLVAQAGKWGHRAIAITDHGGAQAFPEAHSAGKKAGVKILY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           +V 
Sbjct: 399 GVEANVVDDGVPIAYNDAHEALNEATYVVF 428


>gi|256847046|ref|ZP_05552492.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            coleohominis 101-4-CHN]
 gi|256715710|gb|EEU30685.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            coleohominis 101-4-CHN]
          Length = 1448

 Score =  215 bits (546), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 148/919 (16%), Positives = 291/919 (31%), Gaps = 201/919 (21%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            + +D  +   MT+ G         + LL     G + + +LVS   +     +  RI  S
Sbjct: 598  VYVDDLNKH-MTDNGAYRHARPFHVTLLAKNQAGLKNMYKLVSLANVK-YFYRVPRIPRS 655

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------ 188
             L+    EGL++ +  SSG +  A        A+++   +        Y+ +Q       
Sbjct: 656  VLERY-REGLLIGSACSSGEVFTAMMQKGYAEAKQKAAFYD-------YLEVQPKPNYAP 707

Query: 189  ----------HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
                      H          +++L       +VAT ++ +L+ ED     +L+      
Sbjct: 708  LLEQKVISSEHHL--ESIIKNMIKLGDELGKTVVATGDAHYLNPEDAIYRKILINSQGGA 765

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                K   R        +       F     A +  VE   + +  +      +    +K
Sbjct: 766  NPLNKT-KRPDVHFRTTDEMLQEFDFLGSDLAHQIVVENTHKIADEVD---QEISPVEDK 821

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
                  K  E E++++  A  +              +    R+  EL+ I +  FS  +L
Sbjct: 822  LYTPHMKGAEQEIQDRTWATAKKWYGDPL------PKLVYDRVKLELDSIVKNGFSVIYL 875

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
            I    +  + K+   VG  RGS   SV A    IT+++PL                    
Sbjct: 876  IAQRLVAKSNKDGYLVG-SRGSVGSSVVATLSGITEVNPLPPHYRCPHCQYNHFYTKGEY 934

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + F+ FL      +PD D++F  D +     Y++  
Sbjct: 935  SSGYDLPDKKCPKCGTLMIKDGHDIPFQTFLGFKGNKVPDIDLNFSGDYQPIAHNYMKVL 994

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G + V +  T G++  K A   V                                 D  
Sbjct: 995  FGEKNVFRAGTIGTVADKTAYGYV--------------------------KAYERDTDQE 1028

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRSD--- 552
            FR A            +++   G+ R    H AGI+I      +    P+          
Sbjct: 1029 FRGAEEDR--------LAKGATGVKRTTGQHPAGIIIVPDDMDIYDFTPVQYPADDQNAA 1080

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T F+   I    ++K D LG    T+++   D        ++   IP DD     L 
Sbjct: 1081 WETTHFDFHSIHD-NILKMDILGHDDPTMIRALQDLSR-----INPQTIPMDDPGVMSLF 1134

Query: 613  TTKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            ++                TLG+ +  +  +R  LE   P     ++ +  L   G    +
Sbjct: 1135 SSPKALGVTEEQINSKTGTLGLPEFGTRFVRGMLEDTHPKNYSQLLQISGLSH-GTGVWL 1193

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
                              LI   +     VI  ++ +     +  G     +  +  ++ 
Sbjct: 1194 DNAQ-------------ELIKDGVATIANVIGCRDNI-MTDLIHYGLDSETSFQVMESVR 1239

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
                   +     + +   +  + +    +  ++      Y F ++HA AY +++ + A+
Sbjct: 1240 HGRGIPDE-----WQAKMHEANVPQWYIDSCLKI-----KYMFPRAHATAYVLMALRIAY 1289

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKK---------------------------------F 805
             K ++P+ +  A  ++  D+ + +                                    
Sbjct: 1290 FKVYFPLTYYCAFFSVRADDFDVVAMSRGKNAVKAAMKEITDKGNDASAKEKSLLTILEL 1349

Query: 806  CQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
              +  +   +     +      ++ +    +     AI G+G   A+ I+ A  +KPF S
Sbjct: 1350 ANEMLERGYKFKMVDLERSDASNWLIDGKTLIAPFRAIPGLGMNVAKQIVAAREEKPFLS 1409

Query: 865  LEDFCSRVDSKKLNRRVLE 883
             ED   R    K+++ ++E
Sbjct: 1410 KEDLAER---GKVSQTIIE 1425



 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-----CAAG 66
           + L +H++ S ++   S+++ + +     QPAIAITD   +    E  + A         
Sbjct: 337 IELHLHTNMSTMDATNSISDYVKQAIKWGQPAIAITDHAGVQGFPEAYKAAYDGKHQKYN 396

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           I+ I G + ++       + N+          ++ 
Sbjct: 397 IKMIYGLEANVVDDGIPLVYNENHDHLLNSTYVIF 431


>gi|255284409|ref|ZP_05348964.1| DNA polymerase III, alpha subunit, Gram-positive type [Bryantella
            formatexigens DSM 14469]
 gi|255265034|gb|EET58239.1| DNA polymerase III, alpha subunit, Gram-positive type [Bryantella
            formatexigens DSM 14469]
          Length = 1530

 Score =  214 bits (545), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 160/923 (17%), Positives = 288/923 (31%), Gaps = 178/923 (19%)

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G     D  + L   +  +        +++L     G   L  LVS  +L     +  RI
Sbjct: 676  GAD-TFDQVNELGSASLDQIKKLPTYHVIILAKNDVGRVNLYRLVSFSHLQ-YYNRRPRI 733

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190
              S L +   EGLI+ +   +G + RA     S+    R++ F        Y+ +Q    
Sbjct: 734  PKSALNQY-REGLIVGSACEAGELFRAVLEGKSEPEIARIVDFYD------YLEIQPIGN 786

Query: 191  --------------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
                             R    ++V+L      P+VAT +  FL+ ED     ++MA   
Sbjct: 787  NAFLLKEDNDINSEEDLRELNRKIVRLGEQFNKPVVATCDVHFLNPEDEIYRRIIMA--- 843

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
                      +   +           +  +         E     +             +
Sbjct: 844  ------GKGFKDADEQAPLFLRTTEEMLKEFAYLGSEKAEEVVITNTNKIADMCEKISPV 897

Query: 297  EKE-CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
              + C  +  + +  LR            +             +RL+ ELN I    F+ 
Sbjct: 898  RPDKCPPVIPDSDKTLRTICYNRAHQIYGE------KLPPIVTERLERELNSIISNGFAV 951

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------- 399
             ++I    +  +  +   VG  RGS   S  A    IT+++PL                 
Sbjct: 952  MYIIAQKLVWKSNADGYLVG-SRGSVGSSFVATMAGITEVNPLSPHYYCEDCHYYDFDSD 1010

Query: 400  -----------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
                                         F + FE FL       PD D++F  D +   
Sbjct: 1011 EVKAYSGRAGCDMPDKNCPVCGAPLRKEGFDIPFETFLGFKGNKEPDIDLNFSGDYQGNA 1070

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
             RY +  +G     +  T G+L  K A   V +  +                        
Sbjct: 1071 HRYTEVIFGEGHTFRAGTVGTLADKTAFGYVKKYYE------------------------ 1106

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRD 548
                                +  I +   G+ R    H  GI+       +    P+   
Sbjct: 1107 ----------EHGQRKRTCEINRIVEGCVGVRRTTGQHPGGIIVLPHGEEIYSFTPIQHP 1156

Query: 549  VRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                  D+  T F+   I    L+K D LG    T+++   D             IP DD
Sbjct: 1157 ANDTETDIITTHFDYHSI-DHNLLKLDILGHDDPTMIRMLEDLTGLHA-----QDIPLDD 1210

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                 L  +   LG+   E  G      G+     E +I ++   +P    ++V  +   
Sbjct: 1211 KSVMSLFQSTEALGVTPEEILGCPLGSLGIPEFGTEFVIQMLQDTKPQSFSDLVRISGLS 1270

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            +G +  +     +    K T    I     +    +  G     +  +  ++ K    + 
Sbjct: 1271 HGTDVWLGNAQTLIQEGKATISTAICTRDDIMTYLIRMGLDSELSFTIMESVRKGKGLKP 1330

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK----- 780
            +     +     ++ +      +  ++      Y F K+HAAAY +++Y+ A+ K     
Sbjct: 1331 E-----WEKEMKEHDVPDWYIWSCKKI-----KYMFPKAHAAAYVMMAYRIAYCKVYYPL 1380

Query: 781  -------------THYPVEFLAA---------------SMTLEMDNVEKIKKFCQDARQF 812
                          +Y +  L                 S+T +  +  K  K  Q+    
Sbjct: 1381 AYYAAYFSIRASAFNYELMCLGHERLLAHMKEYKKNYDSLTKKEQDTYKDMKSVQEMYAR 1440

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              + +P  +N      F++ D ++  SL +I G+G   A  ++EA  D PF S +DF  R
Sbjct: 1441 GFEFVPIDINKADASRFQIVDGKLMPSLCSIDGLGDKAAEAVVEAVKDGPFLSKDDFWQR 1500

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+ + V++ +   G L   
Sbjct: 1501 T---KVPKSVIDVMSDLGLLGDL 1520



 Score = 67.9 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
           V L  H+  S ++G   + +I+ +      PAIAITD      A++  
Sbjct: 400 VELHCHTKMSDMDGVSEVKDIVKQAYKWGHPAIAITDH----GAVQAF 443


>gi|323484216|ref|ZP_08089585.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum
            WAL-14163]
 gi|323692098|ref|ZP_08106345.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
 gi|323402458|gb|EGA94787.1| hypothetical protein HMPREF9474_01336 [Clostridium symbiosum
            WAL-14163]
 gi|323503898|gb|EGB19713.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
          Length = 1511

 Score =  214 bits (545), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 157/982 (15%), Positives = 288/982 (29%), Gaps = 211/982 (21%)

Query: 53   FSA-----LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
              A     + F +      I        D+   + L               I+++     
Sbjct: 634  AGATAEIFVRFIKMLKERDI-------FDLSQLNELSRMTVEMIRKMPTYHIIIIAKNDV 686

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ-V 166
            G   L  LVS   L     +  RI  S L +   EGLI+ +   +G + +A         
Sbjct: 687  GRVNLYRLVSESNLT-YFARRPRIPKSLLSQY-REGLIIGSACEAGELYQALLRGVPDTE 744

Query: 167  AEKRLLTFKKLFGDRLYVNLQRHRGY-----DRY-----------RESQVVQLAYTHELP 210
              K +  +        Y+ +Q          D                ++V L   +  P
Sbjct: 745  IHKIVDFYD-------YLEIQPLGNNAFMLRDEKSPVNSEEELMDLNRRIVGLGEQYNKP 797

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
            + AT +  FL  ED E +  ++  +     +    P          R           E 
Sbjct: 798  VCATCDVHFLDPED-EVYRRIIMSSKGFKDADDQAPLYLRTTDEMLREFEYLGSDKAEEV 856

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
            +             ++            +C  +    +  LR+           +     
Sbjct: 857  VITNTRKIAAMCERIE-------PVRPDKCAPVIPNSDETLRSICYNKAHEMYGENL--- 906

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                +    RL+ ELN I    F+  ++I    +  + ++   VG  RGS   S+ A   
Sbjct: 907  ---PKIVVDRLERELNSIISNGFAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSLVATMS 962

Query: 391  TITDIDPLR---------------------------------------------FSLLFE 405
             IT+++PL                                              F + FE
Sbjct: 963  GITEVNPLSPHYYCTNCHYYDFDSEEVRKFAGMAGCDMPDKNCPVCGEPLKKDGFDIPFE 1022

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
             FL       PD D++F  + +     Y +  +G  +  +  T G+L  K A   V    
Sbjct: 1023 TFLGFKGDKEPDIDLNFSGEYQSRAHTYTEVIFGKGQTFRAGTIGTLADKTAYGYVKGYY 1082

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
            +                                   R        +  I     G+ R  
Sbjct: 1083 ED----------------------------------RGVRKRRCEIDRIVGGCVGVRRTT 1108

Query: 526  STHAAGIV--IGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
              H  GI+       +    P+           VT           L+K D LG    T+
Sbjct: 1109 GQHPGGIIVLPHGEEIYSFTPVQHPADDMTTRTVTTHFDYHSIDHNLLKLDILGHDDPTM 1168

Query: 582  LQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
            ++   D   Q  VK        D  E   L      LGI   +  G +    G+     +
Sbjct: 1169 IRMLQDLTGQDPVKDFP----LDSKEVMSLFQNTSALGIEPEDIGGCKLGALGIPEFGTD 1224

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
              + ++   +P    ++V  +   +G +  +     +    K T    I     + +  +
Sbjct: 1225 FAMQMLIDAQPKYFSDLVRISGLSHGTDVWLGNAQTLIQEGKATIQTAICTRDDIMVYLI 1284

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
              G     A  +  ++ K    + +     +I   + +G+      +  ++      Y F
Sbjct: 1285 GMGLEEGLAFTIMESVRKGKGLKDE-----WIKEMTDHGVPDWYIWSCKKI-----KYMF 1334

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI------------------- 802
             K+HAAAY +++++ A+ K  YP+ + AA  ++       +                   
Sbjct: 1335 PKAHAAAYVMMAWRIAYCKVFYPLAYYAAFFSIRASGFSYVLMCQGREKLEYHLADYKKR 1394

Query: 803  --------------KKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGT 847
                           +  Q+      +     +       F++ D ++  SL++I G+G 
Sbjct: 1395 MDTLSKKEQDTLRDMRIVQEMYARGFEFTAIDIFKASARSFQIVDGKLMPSLSSIDGLGE 1454

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              A  I+ A+ D PF S EDF +R    K+ + V         +   G     LL  L  
Sbjct: 1455 KAADAIVFAAEDGPFLSREDFINRT---KVTKTV------CDLMGELG-----LLGDLPE 1500

Query: 908  IQKYAQWVEKNRTNKHENIFAH 929
                         +   ++F  
Sbjct: 1501 -------------SNQLSLFDM 1509



 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 29/87 (33%), Gaps = 1/87 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-SQKACAAGIQPI 70
           V L  H+  S ++G   + +++ +       A+A+TD   + S  +           + +
Sbjct: 400 VELHCHTKMSDMDGVSEVKDLIKRAKQWGMDAMAVTDHGCVQSFPDANHSVERGDNFKVL 459

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVP 97
            G +  +       + N          
Sbjct: 460 YGVEGYLVDDMKELVENGAGQSLDHTC 486


>gi|126654115|ref|ZP_01725933.1| DNA polymerase III PolC [Bacillus sp. B14905]
 gi|126589395|gb|EAZ83545.1| DNA polymerase III PolC [Bacillus sp. B14905]
          Length = 1443

 Score =  214 bits (545), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 157/926 (16%), Positives = 306/926 (33%), Gaps = 189/926 (20%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVP--SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            +L I   D+      G   +         +L     G + L ++VS  +      +  R+
Sbjct: 593  ELVIKYHDDFNKHIGGGDAYKKGRPMHCTILAVDNAGLKNLFKIVSHAHTKT-FYRVPRV 651

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ---- 187
              + L++   EGL++ +G S+G +       S + AE+    +        Y+ +Q    
Sbjct: 652  TRAVLEQY-REGLLVGSGCSNGELFETMMNKSPEEAEQVAKFYD-------YIEVQPKAV 703

Query: 188  ------RHRGYDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
                  R+   D +       ++V+L    + P+VAT N  +L   D     +L+     
Sbjct: 704  YAPLIERNVVRDEWTLEDIIRKLVKLGKKLDKPVVATGNVHYLDPTDAMFRQILVGSQGG 763

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                              +       F     A E  V  A++ +  +    PI      
Sbjct: 764  A-NILNRSKLPEVHFRTTDEMLKEFDFLGPDLAKEVVVTNAQKVADSIGDVKPIKDDLYT 822

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E+ N           +         +  + R++ EL  I    F   +
Sbjct: 823  PKIEG----SDDEVTNLTYEMAHHIYGE------ELPEIVKARIEKELKSILGHGFGVIY 872

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI A  ++ +  +   VG  RGS   S+ A  + IT+++PL                   
Sbjct: 873  LISAKLVKKSLADGYLVG-SRGSVGSSLVATFMEITEVNPLPPHYVCPNCKHSEFFDDGS 931

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + + +   Y + 
Sbjct: 932  VSSGFDLPNKDCSECGTPYKKDGQDIPFETFLGFKGDKVPDIDLNFSGEYQPKAHNYTKV 991

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V +     ++   R  +                   
Sbjct: 992  LFGEDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLHFRGAE------------------- 1031

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS--- 551
                          +  + Q   G+ R +  H  GI  V     +    P+     +   
Sbjct: 1032 --------------VDRLVQGCTGVKRTSGQHPGGIIVVPDYMDIFDFSPVQFPADAQDA 1077

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPF 603
            +   T F+   I    ++K D LG    T+++   D              V + +   P 
Sbjct: 1078 EWRTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPVVMQIFSSPE 1136

Query: 604  DDHETYHLL-TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
                T   +    GTLGI +  +  +RQ LE  +P    +++ +  L             
Sbjct: 1137 TLGVTEKQIGCKTGTLGIPEFGTRFVRQMLEDTKPSTFSELVQISGLSHG-------TDV 1189

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
               N +E I +   ++  ++     +++Y         +  G   S A  +  ++ K   
Sbjct: 1190 WLGNAQELIHNGTCVLKEVIGCRDDIMVYL--------IYQGLEPSLAFKIMESVRKGKG 1241

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
               +     F +    N +      +  ++      Y F K+HAAAY +++ + AW K H
Sbjct: 1242 LSEE-----FEAEMLANKVPGWYIESCKKI-----KYMFPKAHAAAYVLMAVRIAWFKVH 1291

Query: 783  YPVEFLAASMTLEMDNVEKI---------------------------------KKFCQDA 809
            +P+ + AA  T+  D+ + I                                  +   + 
Sbjct: 1292 FPILYYAAYFTVRADDFDLIAMVQGSQMIRARIDEINLKGLDASTKEKNLLTVMELALEM 1351

Query: 810  RQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
             +  +      +      +F +  N +     AI G+GT  A+ I+ A  D  F S ED 
Sbjct: 1352 CERGMSFQKVDLYRSQASEFVIEGNTLIPPFDAIPGLGTNVAKTIVAAREDGEFLSKEDL 1411

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCF 894
              R    ++++ ++E +   G L+  
Sbjct: 1412 QQR---GRVSKTLIEYMDQLGCLEGM 1434



 Score = 89.1 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ + A    PA+AITD   + S  E        GI+ I 
Sbjct: 342 VELHLHTPMSQMDAVTPVDRLVAQAAKWGHPAVAITDHAVVQSFPEAYAAGKKHGIKVIY 401

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++                     +V 
Sbjct: 402 GLEANLVDDGVPIAYAPEHRLLEEATYVVF 431


>gi|172057851|ref|YP_001814311.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum 255-15]
 gi|171990372|gb|ACB61294.1| DNA polymerase III, alpha subunit [Exiguobacterium sibiricum 255-15]
          Length = 1431

 Score =  214 bits (545), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 138/916 (15%), Positives = 292/916 (31%), Gaps = 172/916 (18%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
             ++    +L                 +      G + L +L+S  +      + VR   S
Sbjct: 581  FNMKTHLSLNREMGKDISRARPYHATVYAKNRTGLKNLYQLISLAHTK-HVHRVVRTPRS 639

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NLQ 187
             L     +GLI+ +   +G +  A    S +   K +  +   ++    +Y       + 
Sbjct: 640  QLVA-HRDGLIIGSACDNGEVFDAALNKSDEDLAKVMRFYDFIEIQPPAMYGHLIEREIV 698

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            ++    R    +V+++A  +++  VAT N  +L + D    +VL+       +    +  
Sbjct: 699  QNELELRELIKKVIRVAEENDILPVATGNVHYLDQHDATYREVLIRTQGGANMLNMRKQL 758

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                            F     +    +  +++ +   +    I       + +      
Sbjct: 759  PPAHFRTTQEMMSDFKFLGPDVSERLVITNSQQVAGWFENIDIIPKDLFTPKIEG----A 814

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + E+R+ +                   +    RL+ EL  I    F+  +LI    ++ +
Sbjct: 815  DEEVRSLSYDMAHQIYGD------VLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKS 868

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
              +   VG  RGS   S+ A    IT+++PL                             
Sbjct: 869  LDDGYLVG-SRGSVGSSLVATMTEITEVNPLPPHYVCPNCKESEFFDDGSVGSGFDLPDK 927

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  + + +   Y +  +G + V + 
Sbjct: 928  TCKTCDVPLIKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPKAHAYTKVLFGDDYVYRA 987

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V                                    ++     + 
Sbjct: 988  GTIGTIAEKTAYGYV----------------------------------KGYQSENDLNY 1013

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS---DLPVTQFNMK 561
                +  +   + G+ R    H  GI  V     +  + P+         +   T F+  
Sbjct: 1014 RNAEVDRLVSGVTGVKRTTGQHPGGIIVVPDYMDIYDISPIQFPADDMGSEWKTTHFDFH 1073

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLL 612
             I    L+K D LG    T+++   D   +    + +         +           + 
Sbjct: 1074 SIHD-NLLKLDILGHDDPTMIRMLQDLSGRDPKTIPVDDAEVMKIFSSTESIGVTPEQID 1132

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +  GTLGI +  +  +RQ LE  +P    +++ +  L                N  E I 
Sbjct: 1133 SKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQISGLSHG-------TDVWLGNASELIY 1185

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
            +    +  ++     +++Y         + +G   S A  +  ++ K     ++ ++   
Sbjct: 1186 NGTCELKDVIGCRDDIMVYL--------IYAGLEPSLAFKIMESVRKGKGLSIEMEEAMI 1237

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
                      +      +    K   Y F K+HAAAY +++ + A+ K H+P+ + A+  
Sbjct: 1238 ----------ENHVPLWYIDSCKKIKYMFPKAHAAAYVLMAVRIAYYKVHHPMYYYASYF 1287

Query: 793  TLEMDNVE---------------------------------KIKKFCQDARQFNIQIMPP 819
            T+   + +                                  + +   +  +        
Sbjct: 1288 TVRAGDFDIGAMNKGSAAVRKVLQDIKDKGFEATAKDKGLYTVLEIALEMIERGFTFSKV 1347

Query: 820  SVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
             +      +F +  + +     A+ G+GT  A+ I+EA     F S ED   R    KL+
Sbjct: 1348 DLYKSSASEFLIDGDALLPPFDAVTGLGTNAAKQIVEARKGGEFLSKEDLQKRA---KLS 1404

Query: 879  RRVLESLVFAGALDCF 894
            + ++E+L   G L+  
Sbjct: 1405 KSIIETLDNLGCLEGL 1420



 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 6/93 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA---LEFSQKACAAGIQ 68
           V L  HS  S ++  +++   +++ AA   PA+AITD      A    +         I+
Sbjct: 328 VELHAHSQMSQMDAVMNVTKYVERAAAWGHPAVAITDH---AGAQSFPDAYYAGKKNDIK 384

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
            + G + ++         +           +V 
Sbjct: 385 ILYGIEANVVNDGVQVAYHPVDQELEKATFVVF 417


>gi|302668622|ref|YP_003833070.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316]
 gi|302397586|gb|ADL36488.1| DNA polymerase III C polC2 [Butyrivibrio proteoclasticus B316]
          Length = 1490

 Score =  214 bits (545), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 145/889 (16%), Positives = 290/889 (32%), Gaps = 169/889 (19%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             ++L+     G   L  L+S+ ++ D   +   I  S L +   EGLI+ +    G +  
Sbjct: 650  HVILIAKDTCGRTNLYTLISKSHI-DYYYRKPIIPKSELIKY-REGLIVGSACCLGELYE 707

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR----------------HRGYD-RYRESQV 200
            A     S     +++ F        Y+ +Q                 +   D R    ++
Sbjct: 708  AVREGRSDEEIAKIVDFYD------YLEIQPIANNKFMIANEKMEKINSEEDLRDINRKI 761

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
            V+L   +  P+VAT +  FL+ ED     +++++              T +  L+    +
Sbjct: 762  VKLGEHYNKPVVATCDVHFLNPEDEIYRTIILSMKKMDKEDPAPLYLRTTEEMLQEFEYL 821

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
                +          E+    S  +      +      +C  + +  +  LR      + 
Sbjct: 822  GEEKA---------REVVIENSNKIFDWCEKISPVRPDKCPPVIENSDELLRKICYDKMH 872

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                              +RL+ EL  I    ++  ++I    +  + ++   VG  RGS
Sbjct: 873  EMYGDPL------PPIVEERLEKELKSIIGNGYAVLYIIAQKLVWKSLEDGYLVG-SRGS 925

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S  AYA  IT+++ L                                          
Sbjct: 926  VGSSFVAYAAGITEVNSLAPHYLCPECQYSEFDSEDVKKYAGNSGCDMPDKRCPRCGALM 985

Query: 400  ----FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                F + FE FL       PD D++F  + + +  +Y +  +G  +  +  T  S+  K
Sbjct: 986  KKDGFDIPFETFLGFKGDKEPDIDLNFSGEYQSKAHKYTEVIFGDGQTFRAGTIQSVADK 1045

Query: 456  AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
             A   V +  +                                            +  ++
Sbjct: 1046 TAYGYVKKYFEQAEKTKRSA----------------------------------EIERLA 1071

Query: 516  QKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKF 571
            +  +G+ R    H  GIV       +    P+           +T           L+K 
Sbjct: 1072 EGCKGVRRGTGQHPGGIVVLPVGENIYSFTPIQHPANDMDTPIITTHFDYHKIDHNLLKL 1131

Query: 572  DFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            D LG    T+++            +D   +P DD     L      LGI   + SG +  
Sbjct: 1132 DILGHDDPTMIR-----FLNDCTGLDPKDVPLDDRLVMTLFMNTTALGITPEQISGTKLG 1186

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
              G+     +  + +V   +P    +++  +   +G    +     +      T    I 
Sbjct: 1187 CLGLPEFGTDFAMNMVIDAKPQSFSDLIRISGLSHGTGVWLGNAKDLIDSGAATLSSCIC 1246

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQKERFISGASKNGISKTIAVNIF 750
                + +  +  G   SE+  +  A+ K K+ +  +     +       G+ +    +  
Sbjct: 1247 CRDDIMVYLIHKGLDPSESFKIMEAVRKGKVAKGKENNWPNWEQDMMDKGVPEWYMGSCK 1306

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC---- 806
            ++     +Y F K+HAAAY +++++ A+ K + P  F AA  ++    +   + F     
Sbjct: 1307 KI-----EYMFPKAHAAAYVMMAWRIAYFKIYIPQAFYAAWFSIRAKALNYERMFQGKAT 1361

Query: 807  -----------------------------QDARQFNIQIMPPSVNTPCVD-FKVGDNRIY 836
                                         ++  +  I++ P  +       FKV  ++I 
Sbjct: 1362 LKRYMEEYRKKGDALTAVEEDELMAMRLAEEMYERGIEVEPIDIYKAESRTFKVVGDKIM 1421

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
             SL +++ +G   A  I+EA+ + PF S +DF SR    ++    +  L
Sbjct: 1422 PSLVSLERLGEKAADQIVEAAKEGPFTSRDDFKSRTKCPQVVVDNMTRL 1470



 Score = 68.7 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 10/100 (10%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE---FSQKACAA--- 65
           V L  H+  S ++   S  +I+ +      P IAITD   +    E   F ++       
Sbjct: 363 VELHCHTKMSDMDAVSSAEDIILQAYKWGMPGIAITDHAVVQGLTEGDHFIKEYKGKHKD 422

Query: 66  ----GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
                 + ++G +  +       +TN        VP++V 
Sbjct: 423 CDIDKFKLLLGVEGYLVDDFVKIVTNNKGQELKGVPAVVF 462


>gi|256617164|ref|ZP_05474010.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
 gi|256596691|gb|EEU15867.1| DNA polymerase III [Enterococcus faecalis ATCC 4200]
          Length = 1440

 Score =  214 bits (545), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 151/947 (15%), Positives = 302/947 (31%), Gaps = 179/947 (18%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +      N  +               +L +T  G + L +L+S
Sbjct: 574  FLKEAKENH-------DMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 626

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
                +D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 627  MSN-VDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 684

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L ++        S +V++       +VAT N  +L+EED   +  
Sbjct: 685  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAI-YRK 743

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            ++  +                    +       F     A    VE   + + + +   P
Sbjct: 744  ILVGSMGGANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEVIP 803

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +       +        E E+ + +                   +   +RL+ ELN I  
Sbjct: 804  VKDDLYTPKIPG----SEQEITDLSYNRARELYGDPL------PEIVEKRLEKELNSING 853

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 854  NGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYS 912

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  D + E
Sbjct: 913  EFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAE 972

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  K A   V         + D    L   +       
Sbjct: 973  AHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY------ERDHNLHLRGAE------- 1019

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                                 +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1020 ---------------------IDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1058

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1059 PADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IEPKTIPTDDPE 1115

Query: 605  DHETYH-----------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +            + +  GTLGI +  +  +R  LE   P    +++ +  L    
Sbjct: 1116 VMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHG- 1174

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1175 ------TDVWLGNAEELIRRGEANLAEVIGCRDDIMVYL--------IHAGLDSGLAFKI 1220

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++  +       A K        ++    +     Y F K+HAAAY +++
Sbjct: 1221 METVRKGQWNKIPDELRDTYLNAMKENNVPDWYIDSCSKI----KYMFPKAHAAAYVLMA 1276

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1277 LRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLL 1336

Query: 805  ----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                 C +  +   +     +     + F +  + +     A+  +G   A+ I+ A  +
Sbjct: 1337 TVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREE 1396

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSL 905
            +PF S ED  +R    K+++ ++E +   G L D    +++ L   L
Sbjct: 1397 QPFLSKEDLATR---GKVSKTLIEYMNENGVLKDLLDENQLSLFDML 1440



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 43/305 (14%), Positives = 97/305 (31%), Gaps = 9/305 (2%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 328 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 387

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G + +I         N+          +V  V T  G   + + +  +  +   K +V  
Sbjct: 388 GVEANIVDDGVPIAYNEEHIELTDATYVVFDVETTTGLSAVYDTIIELAAVKMHKGNVIE 447

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                 + G   L   T   +G  D     + S+  E+ L  FK+ F +   + +  +  
Sbjct: 448 TFEQFIDPGHP-LSQTTINLTGITDEMVRGSKSE--EEVLRMFKE-FSEGTIL-VAHNAS 502

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
           +D    +        H +P  A N  +   E     +    +   +T+  +         
Sbjct: 503 FDMGFLNTSYG---KHGIPE-AANPVIDTLELSRFLYPHFKSHRLNTLSKKFGVNLEQHH 558

Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
             + +      +     +  +   ++         +      +        I    +  L
Sbjct: 559 RAIYDSESTGHLCWIFLKEAKENHDMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGL 618

Query: 312 RNKAV 316
           +N   
Sbjct: 619 KNLFK 623


>gi|255975216|ref|ZP_05425802.1| DNA polymerase III [Enterococcus faecalis T2]
 gi|255968088|gb|EET98710.1| DNA polymerase III [Enterococcus faecalis T2]
          Length = 1439

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 146/924 (15%), Positives = 293/924 (31%), Gaps = 178/924 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +      N  +               +L +T  G + L +L+S
Sbjct: 573  FLKEAKENH-------DMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
                +D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 626  MSN-VDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 683

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L ++        S +V++       +VAT N  +L+EED   +  
Sbjct: 684  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAI-YRK 742

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            ++  +                    +       F     A    VE   + + + +   P
Sbjct: 743  ILVGSMGGANPLNRHSLPKVHFRTTDEMLTEFQFLGQDIAKRIVVENPNKVADLCEEVIP 802

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +       +        E E+ + +                   +   +RL+ ELN I  
Sbjct: 803  VKDDLYTPKIPG----SEQEITDLSYNRARELYGDPL------PEIVEKRLEKELNSING 852

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 853  NGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYS 911

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  D + E
Sbjct: 912  EFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAE 971

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  K A   V         + D    L   +       
Sbjct: 972  AHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY------ERDHNLHLRGAE------- 1018

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                                 +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1019 ---------------------IDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1057

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1058 PADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IDPKTIPTDDPE 1114

Query: 605  DHETYH-----------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +            + +  GTLGI +  +  +R  LE   P    +++ +  L    
Sbjct: 1115 VMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHG- 1173

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1174 ------TDVWLGNAEELIRRGEANLAEVIGCRDDIMVYL--------IHAGLDSGMAFKI 1219

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++  +       A K        ++    +     Y F K+HAAAY +++
Sbjct: 1220 METVRKGQWNKIPDELRDTYLNAMKENNVPDWYIDSCSKI----KYMFPKAHAAAYVLMA 1275

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1276 LRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLL 1335

Query: 805  ----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                 C +  +   +     +     + F +  + +     A+  +G   A+ I+ A  +
Sbjct: 1336 TVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREE 1395

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLE 883
            +PF S ED  +R    K+++ ++E
Sbjct: 1396 QPFLSKEDLATR---GKVSKTLIE 1416



 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 328 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 387

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 388 GVEANIVDDGVPIAYNEEHIELTDATYVVF 417


>gi|225026305|ref|ZP_03715497.1| hypothetical protein EUBHAL_00546 [Eubacterium hallii DSM 3353]
 gi|224956369|gb|EEG37578.1| hypothetical protein EUBHAL_00546 [Eubacterium hallii DSM 3353]
          Length = 1484

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 157/941 (16%), Positives = 307/941 (32%), Gaps = 184/941 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            L F +      +         +   +++   +            ++LV    G   L  L
Sbjct: 609  LRFVEMLEEQDVH-------TLAKLNDMGAMSPDLIKKAPSYHGIILVKNETGRINLNRL 661

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  +L D   +  R+  S +Q+   EGLI+ +   +G + +A     S+     L+ F 
Sbjct: 662  VSASHL-DYFNRRPRMPESLIQKY-REGLILGSACEAGELFQAVIRGKSEEELAELVRFY 719

Query: 176  KLFGDRLYVNLQRHR----------------GYDRYRESQVVQLAYTHELPLVATNNSLF 219
                   Y+ +Q                      +    ++V+L   +  P+VAT +  F
Sbjct: 720  D------YLEIQPIGNNMFMLESDRYEAKTVEDLQNYNRKIVELGERYHKPVVATCDVHF 773

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            L+ ED +   +LMA       S  D        Y +   EM+  F+ L EA     E+  
Sbjct: 774  LNPEDEQYRRILMA---GKGFSDADNQ---APLYFRTTEEMLEEFAYLGEA--KAKEVVI 825

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
              +  +      +      +C  +  + +  L                           +
Sbjct: 826  TNTNKIADMIEKISPVHPDKCPPVIPKSDETLTKICYDKAHEIYGPDL------PDIVEE 879

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RL  ELN I    F+  ++I    +  +  +   VG  RGS   S  A    IT+++PL 
Sbjct: 880  RLQRELNSIISNGFAVMYIIAQKLVWDSNDHGYLVG-SRGSVGSSFVATMAGITEVNPLS 938

Query: 400  -----------------------------------------------FSLLFERFLNPDR 412
                                                             + FE FL    
Sbjct: 939  AHYICPKCHYVDFDSDAVRPYSKKGMSGCDMPDRDCPVCGTPLQKEGHDIPFETFLGFKG 998

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
               PD D++F  + + +  +YV+  +G  +  +  T G+L  K A   V +  +      
Sbjct: 999  NKEPDIDLNFSGEYQSKAHKYVEVIFGEGKAFRAGTIGTLAEKTAYGYVYKYFE------ 1052

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
                                         R        +  +++   G+ R    H  GI
Sbjct: 1053 ----------------------------ERDIHKRRCEMERLAEGCTGVKRTTGQHPGGI 1084

Query: 533  V--IGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            +    +  + +   +           +T           L+K D LG    T++++  D 
Sbjct: 1085 IVVPHEHEIYEFTAIQHPANDVNTDIITTHFEYHSIDHNLLKLDILGHDDPTMIRRLEDL 1144

Query: 589  LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
                   +D + IP DD E   L  +   LGI   +  G+     G+     E ++ ++ 
Sbjct: 1145 T-----GMDATTIPLDDPEVMSLFHSTDILGITPEDIGGIEMGSLGVPEFGTEFVMQMLK 1199

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
               P    ++V  +   +G +  +     +    K      I     +    +  G    
Sbjct: 1200 DTNPKCFSDLVRISGLSHGTDVWLGNAQTLIEEGKAEISTAICCRDDIMTYLINMGLDKE 1259

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            ++  +  ++ K    + +     +    + +G+      +  ++      Y F K+HAAA
Sbjct: 1260 QSFTIMESVRKGKGLKPE-----WEEEMTSHGVPDWYIWSCKKI-----KYMFPKAHAAA 1309

Query: 769  YAVISYQTAWMKTHYPVEFLAASM----------------------------------TL 794
            Y ++ ++ AW K H P+ + AA                                    T 
Sbjct: 1310 YVMMGWRVAWFKVHKPLAYYAAYFGIRASAFSYEIMCRGKERLDIALTELLKTPKDQQTK 1369

Query: 795  EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHI 853
            +  +  +  +  Q+      + MP  +      + ++ D +I   L++++G+G      +
Sbjct: 1370 KDQDTIRDGRIAQEMYARGFEFMPIDIYKAKARECQIIDGKIMPPLSSVEGLGDKACEQV 1429

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             EA+   PF SLE+F    +  K+++  ++ +V  G L   
Sbjct: 1430 EEAAKHGPFTSLENFR---NQAKVSKTNVDKMVELGILTGL 1467



 Score = 67.1 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC--AAGIQP 69
           V L +H+  S L+  + +  ++++  A   PA+AITD   L  A   +          + 
Sbjct: 367 VELHLHTVMSDLDSVVDIKKVINQAKAWGHPAMAITDHGVLQ-AFPIANHCITMDEPFKI 425

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           I G +          +TN          
Sbjct: 426 IYGVEGYFVNDLKKLVTNDKGQTLLDDY 453


>gi|169827163|ref|YP_001697321.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41]
 gi|168991651|gb|ACA39191.1| DNA polymerase III polC-type [Lysinibacillus sphaericus C3-41]
          Length = 1468

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 157/926 (16%), Positives = 306/926 (33%), Gaps = 189/926 (20%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVP--SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            +L I   D+      G   +         +L     G + L ++VS  +      +  R+
Sbjct: 618  ELVIKYHDDFNKHIGGGDAYKKGRPMHCTILAVDNAGLKNLFKIVSHSHTKT-FYRVPRV 676

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ---- 187
              + L++   EGL++ +G S+G +       S + AE+    +        Y+ +Q    
Sbjct: 677  TRAVLEQY-REGLLVGSGCSNGELFETMMNKSPEEAEQVAKFYD-------YIEVQPKAV 728

Query: 188  ------RHRGYDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
                  R+   D +       ++V+L    + P+VAT N  +L   D     +L+     
Sbjct: 729  YAPLIERNVVRDEWTLEDIIRKLVKLGKKLDKPVVATGNVHYLDPTDAMFRQILVGSQGG 788

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                              +       F     A E  V  A++ +  +    PI      
Sbjct: 789  A-NILNRSKLPEVHFRTTDEMLKEFDFLGPDLAKEVVVTNAQKVADSIGDVKPIKDDLYT 847

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E+ N           +         +  + R++ EL  I    F   +
Sbjct: 848  PKIEG----SDDEVTNLTYEMAHHIYGE------ELPEIVKARIEKELKSILGHGFGVIY 897

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI A  ++ +  +   VG  RGS   S+ A  + IT+++PL                   
Sbjct: 898  LISAKLVKKSLADGYLVG-SRGSVGSSLVATFMEITEVNPLPPHYVCPNCKHSEFFDDGS 956

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + + +   Y + 
Sbjct: 957  VSSGFDLPNKDCSECGTPYKKDGQDIPFETFLGFKGDKVPDIDLNFSGEYQPKAHNYTKV 1016

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V +     ++   R  +                   
Sbjct: 1017 LFGEDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLHFRGAE------------------- 1056

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS--- 551
                          +  + Q   G+ R +  H  GI  V     +    P+     +   
Sbjct: 1057 --------------VDRLVQGCTGVKRTSGQHPGGIIVVPDYMDIFDFTPVQFPADAQDA 1102

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPF 603
            +   T F+   I    ++K D LG    T+++   D              V + +   P 
Sbjct: 1103 EWRTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPVVMQIFSSPE 1161

Query: 604  DDHETYHLL-TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
                T   +    GTLGI +  +  +RQ LE  +P    +++ +  L             
Sbjct: 1162 SLGVTEKQIGCKTGTLGIPEFGTRFVRQMLEDTKPSTFSELVQISGLSHG-------TDV 1214

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
               N +E I +   ++  ++     +++Y         +  G   S A  +  ++ K   
Sbjct: 1215 WLGNAQELIHNGTCVLKEVIGCRDDIMVYL--------IYQGLEPSLAFKIMESVRKGKG 1266

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
               +     F +    N +      +  ++      Y F K+HAAAY +++ + AW K H
Sbjct: 1267 LSEE-----FEAEMLANKVPGWYIESCKKI-----KYMFPKAHAAAYVLMAVRIAWFKVH 1316

Query: 783  YPVEFLAASMTLEMDNVEKI---------------------------------KKFCQDA 809
            +P+ + AA  T+  D+ + I                                  +   + 
Sbjct: 1317 FPILYYAAYFTVRADDFDLIAMVQGSQMIRARIDEINLKGLDASTKEKNLLTVMELALEM 1376

Query: 810  RQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
             +  +      +      +F +  N +     AI G+GT  A+ I+ A  D  F S ED 
Sbjct: 1377 CERGMSFQKVDLYRSQASEFVIEGNTLIPPFDAIPGLGTNVAKTIVAAREDGEFLSKEDL 1436

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCF 894
              R    ++++ ++E +   G L+  
Sbjct: 1437 QQR---GRVSKTLIEYMDQLGCLEGM 1459



 Score = 88.7 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ + A    PA+AITD   + S  E        GI+ I 
Sbjct: 367 VELHLHTPMSQMDAVTPVDRLVAQAAKWGHPAVAITDHAVVQSFPEAYAAGKKHGIKVIY 426

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++                     +V 
Sbjct: 427 GLEANLVDDGVPIAYAPEHRLLADATYVVF 456


>gi|257419836|ref|ZP_05596830.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|257161664|gb|EEU91624.1| DNA polymerase III [Enterococcus faecalis T11]
          Length = 1439

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 146/924 (15%), Positives = 293/924 (31%), Gaps = 178/924 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +      N  +               +L +T  G + L +L+S
Sbjct: 573  FLKEAKENH-------DMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
                +D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 626  MSN-VDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 683

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L ++        S +V++       +VAT N  +L+EED   +  
Sbjct: 684  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAI-YRK 742

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            ++  +                    +       F     A    VE   + + + +   P
Sbjct: 743  ILVGSMGGANPLNRHSLPKVHFRTTDEMLTEFQFLGQDIAKRIVVENPNKVADLCEEVIP 802

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +       +        E E+ + +                   +   +RL+ ELN I  
Sbjct: 803  VKDDLYTPKIPG----SEQEITDLSYNRARELYGDPL------PEIVEKRLEKELNSING 852

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 853  NGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYS 911

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  D + E
Sbjct: 912  EFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAE 971

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  K A   V         + D    L   +       
Sbjct: 972  AHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY------ERDHNLHLRGAE------- 1018

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                                 +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1019 ---------------------IDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1057

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1058 PADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IEPKTIPTDDPE 1114

Query: 605  DHETYH-----------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +            + +  GTLGI +  +  +R  LE   P    +++ +  L    
Sbjct: 1115 VMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHG- 1173

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1174 ------TDVWLGNAEELIRRGEANLAEVIGCRDDIMVYL--------IHAGLDSGMAFKI 1219

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++  +       A K        ++    +     Y F K+HAAAY +++
Sbjct: 1220 METVRKGQWNKIPDELRDTYLNAMKENNVPDWYIDSCSKI----KYMFPKAHAAAYVLMA 1275

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1276 LRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLL 1335

Query: 805  ----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                 C +  +   +     +     + F +  + +     A+  +G   A+ I+ A  +
Sbjct: 1336 TVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREE 1395

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLE 883
            +PF S ED  +R    K+++ ++E
Sbjct: 1396 QPFLSKEDLATR---GKVSKTLIE 1416



 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 328 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 387

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 388 GVEANIVDDGVPIAYNEEHIELTDATYVVF 417


>gi|256961318|ref|ZP_05565489.1| DNA polymerase III [Enterococcus faecalis Merz96]
 gi|256951814|gb|EEU68446.1| DNA polymerase III [Enterococcus faecalis Merz96]
          Length = 1439

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 146/924 (15%), Positives = 293/924 (31%), Gaps = 178/924 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +      N  +               +L +T  G + L +L+S
Sbjct: 573  FLKEAKENH-------DMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
                +D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 626  MSN-VDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 683

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L ++        S +V++       +VAT N  +L+EED   +  
Sbjct: 684  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAI-YRK 742

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            ++  +                    +       F     A    VE   + + + +   P
Sbjct: 743  ILVGSMGGANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEVIP 802

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +       +        E E+ + +                   +   +RL+ ELN I  
Sbjct: 803  VKDDLYTPKIPG----SEQEITDLSYNRARELYGDPL------PEIVEKRLEKELNSING 852

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 853  NGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYS 911

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  D + E
Sbjct: 912  EFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAE 971

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  K A   V         + D    L   +       
Sbjct: 972  AHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY------ERDHNLHLRGAE------- 1018

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                                 +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1019 ---------------------IDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1057

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1058 PADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IEPKTIPTDDPE 1114

Query: 605  DHETYH-----------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +            + +  GTLGI +  +  +R  LE   P    +++ +  L    
Sbjct: 1115 VMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHG- 1173

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1174 ------TDVWLGNAEELIRRGEANLAEVIGCRDDIMVYL--------IHAGLDSGMAFKI 1219

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++  +       A K        ++    +     Y F K+HAAAY +++
Sbjct: 1220 METVRKGQWNKIPDELRDTYLNAMKENNVPDWYIDSCSKI----KYMFPKAHAAAYVLMA 1275

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1276 LRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLL 1335

Query: 805  ----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                 C +  +   +     +     + F +  + +     A+  +G   A+ I+ A  +
Sbjct: 1336 TVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREE 1395

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLE 883
            +PF S ED  +R    K+++ ++E
Sbjct: 1396 QPFLSKEDLATR---GKVSKTLIE 1416



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 328 VELHMHSNMSTMDATNKVGDLVVQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 387

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 388 GVEANIVDDGVPIAYNEEHIELTDATYVVF 417


>gi|256956660|ref|ZP_05560831.1| DNA polymerase III [Enterococcus faecalis DS5]
 gi|256947156|gb|EEU63788.1| DNA polymerase III [Enterococcus faecalis DS5]
          Length = 1439

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 146/924 (15%), Positives = 293/924 (31%), Gaps = 178/924 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +      N  +               +L +T  G + L +L+S
Sbjct: 573  FLKEAKENH-------DMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
                +D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 626  MSN-VDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 683

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L ++        S +V++       +VAT N  +L+EED   +  
Sbjct: 684  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAI-YRK 742

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            ++  +                    +       F     A    VE   + + + +   P
Sbjct: 743  ILVGSMGGANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEVIP 802

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +       +        E E+ + +                   +   +RL+ ELN I  
Sbjct: 803  VKDDLYTPKIPG----SEQEITDLSYNRARELYGDPL------PEIVEKRLEKELNSING 852

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 853  NGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYS 911

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  D + E
Sbjct: 912  EFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAE 971

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  K A   V         + D    L   +       
Sbjct: 972  AHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY------ERDHNLHLRGAE------- 1018

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                                 +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1019 ---------------------IDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1057

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1058 PADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IEPKTIPTDDPE 1114

Query: 605  DHETYH-----------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +            + +  GTLGI +  +  +R  LE   P    +++ +  L    
Sbjct: 1115 VMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHG- 1173

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1174 ------TDVWLGNAEELIRRGEANLAEVIGCRDDIMVYL--------IHAGLDSGMAFKI 1219

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++  +       A K        ++    +     Y F K+HAAAY +++
Sbjct: 1220 METVRKGQWNKIPDELRDTYLNAMKENNVPDWYIDSCSKI----KYMFPKAHAAAYVLMA 1275

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1276 LRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLL 1335

Query: 805  ----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                 C +  +   +     +     + F +  + +     A+  +G   A+ I+ A  +
Sbjct: 1336 TVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREE 1395

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLE 883
            +PF S ED  +R    K+++ ++E
Sbjct: 1396 QPFLSKEDLATR---GKVSKTLIE 1416



 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 328 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 387

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 388 GVEANIVDDGVPIAYNEEHIELTDATYVVF 417


>gi|256763072|ref|ZP_05503652.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256963554|ref|ZP_05567725.1| DNA polymerase III [Enterococcus faecalis HIP11704]
 gi|256684323|gb|EEU24018.1| DNA polymerase III [Enterococcus faecalis T3]
 gi|256954050|gb|EEU70682.1| DNA polymerase III [Enterococcus faecalis HIP11704]
          Length = 1439

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 146/924 (15%), Positives = 293/924 (31%), Gaps = 178/924 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +      N  +               +L +T  G + L +L+S
Sbjct: 573  FLKEAKENH-------DMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
                +D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 626  MSN-VDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 683

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L ++        S +V++       +VAT N  +L+EED   +  
Sbjct: 684  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAI-YRK 742

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            ++  +                    +       F     A    VE   + + + +   P
Sbjct: 743  ILVGSMGGANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEVIP 802

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +       +        E E+ + +                   +   +RL+ ELN I  
Sbjct: 803  VKDDLYTPKIPG----SEQEITDLSYNRARELYGDPL------PEIVEKRLEKELNSING 852

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 853  NGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYS 911

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  D + E
Sbjct: 912  EFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAE 971

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  K A   V         + D    L   +       
Sbjct: 972  AHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY------ERDHNLHLRGAE------- 1018

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                                 +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1019 ---------------------IDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1057

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1058 PADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IEPKTIPTDDPE 1114

Query: 605  DHETYH-----------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +            + +  GTLGI +  +  +R  LE   P    +++ +  L    
Sbjct: 1115 VMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHG- 1173

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1174 ------TDVWLGNAEELIRRGEANLAEVIGCRDDIMVYL--------IHAGLDSGMAFKI 1219

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++  +       A K        ++    +     Y F K+HAAAY +++
Sbjct: 1220 METVRKGQWNKIPDELRDTYLNAMKENNVPDWYIDSCSKI----KYMFPKAHAAAYVLMA 1275

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1276 LRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLL 1335

Query: 805  ----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                 C +  +   +     +     + F +  + +     A+  +G   A+ I+ A  +
Sbjct: 1336 TVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREE 1395

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLE 883
            +PF S ED  +R    K+++ ++E
Sbjct: 1396 QPFLSKEDLATR---GKVSKTLIE 1416



 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 328 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 387

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 388 GVEANIVDDGVPIAYNEEHIELTDATYVVF 417


>gi|237742507|ref|ZP_04572988.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
 gi|229430155|gb|EEO40367.1| DNA polymerase III alpha subunit [Fusobacterium sp. 4_1_13]
          Length = 1449

 Score =  214 bits (544), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 168/946 (17%), Positives = 327/946 (34%), Gaps = 177/946 (18%)

Query: 51   NLFSALEFSQKACAAGI---QPI-IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA 106
            N+F  + F +K    G+   + I IG ++++  Q                  I++LV T 
Sbjct: 576  NMF--IIFLEKYKEKGLEYMKDINIGFEVNVKKQSLKN--------------IMVLVKTQ 619

Query: 107  EGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS-----GPIDRAFFF 161
             G + +  LVS  ++   G +  RI  S L E   EGLI+ +  ++     G +   +  
Sbjct: 620  AGLKNMYRLVSEAHIKYFGNKKARIPKSVLVE-NREGLIIGSSLTAHFMNTGELADLYLR 678

Query: 162  NSSQVAEKRLLTF--KKLFGDRLYVNLQ------RHRGYDR--YRESQVVQLAYTHELPL 211
            +  +  E+    +   +L     Y  L           Y+           L     + +
Sbjct: 679  HDLEKLEEAAKFYDYIELLPKSTYNELIEKDGTGALGSYEEVEKMNRYFYDLGKKLGILV 738

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
             A++N  +L E +     +L+  +    V    +  +    Y +   EM+  FS L E +
Sbjct: 739  TASSNVHYLDENEDIIRSILLYGSG--TVYNLRQYSINNGFYFRTTDEMLQEFSYLGEDV 796

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
               V +    + I  +    +    E       +  E  +R                   
Sbjct: 797  AKEV-VVTNTNKIADMIESGIRPIPEGFYPPKMENAEEIVRTMTYEKAHRIYGDPL---- 851

Query: 332  YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
                    RL+ ELN I    FS  +L     ++ +  N   VG  RGS   S+ A+ + 
Sbjct: 852  --PDIVSARLERELNAIINNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGSSLVAFMMG 908

Query: 392  ITDIDPLR-----------------------------------------FSLLFERFLNP 410
            IT+++ L                                          +S+ FE F+  
Sbjct: 909  ITEVNALYPHYICDNPECKHSEFIEREGVGIDLPDKICPKCGKKLRKDGYSIPFEVFMGF 968

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
                +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V +       
Sbjct: 969  KGDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAEAYVRK------- 1021

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
                                   +D+     R     + RL + ++K          H  
Sbjct: 1022 ---------------------YFEDNNLNAVRAEIIRLGRLCQGAKKTT------GQHPG 1054

Query: 531  GIVIGDR--PLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            G+VI  +   + +  P+ R    +      T ++   +++  L+K D LG    T ++  
Sbjct: 1055 GMVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDE-QLVKLDILGHDDPTTIK-- 1111

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDI 643
               L Q    +++  IP  D +T  + ++  +LG+   Q+ +      +       +  +
Sbjct: 1112 ---LLQEYTNMEIKDIPLADKDTLKIFSSTESLGVTPEQIGTEIGTYGIPEFGTGFVRQM 1168

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
               +   RP     +V  +   +G    ++         + T   II     +    +  
Sbjct: 1169 ---LIDTRPTTFAELVRISGLSHGTNVWLNNAQEFVRNGQATLSQIITVRDDIMNYLIDQ 1225

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G   S+A  +   + K   ++  +  E++ S   +  +      +   +     +Y F K
Sbjct: 1226 GLDNSDAFKIMEFVRKGKPKKEPENWEKYSSMMKEKKVPDWYIESCRRI-----EYMFPK 1280

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK---------------------- 801
             HA AY +++ + A+ K H P+ F AA ++ + D+ +                       
Sbjct: 1281 GHAVAYVMMAMRIAYFKVHQPLAFYAAFLSRKADDFDMEFMSRGILAKQKLEELSKEPKL 1340

Query: 802  ---------IKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTAR 851
                     I +   +     I+++P  +       F + DN+I   L  I G+G     
Sbjct: 1341 DPKKKNEQAICEIVIEMEARGIELLPVDIYLSDGKKFTIEDNKIRIPLIGINGLGGAVID 1400

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             I++   +  F S+ED   R    K+ + V++ L   GA+     +
Sbjct: 1401 AIVKEREEGNFISVEDLKRRT---KIQQPVVDKLKNIGAISSLSET 1443



 Score = 81.4 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
           V L  H+  S + G   + +I+ +       AIAITD + + S     + A         
Sbjct: 331 VELHTHTKMSEMVGVTDVEDIIKRAKEYGHKAIAITDYSVVHSYPAAFKTAKKLSTDEEK 390

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           I+ I GC++ +   +   +TN           ++ 
Sbjct: 391 IKAIFGCEMYMIDDEAPMVTNPKDKKIDDEEFVIF 425


>gi|307285835|ref|ZP_07565969.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860]
 gi|306502596|gb|EFM71863.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0860]
          Length = 1451

 Score =  214 bits (544), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 146/924 (15%), Positives = 293/924 (31%), Gaps = 178/924 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +      N  +               +L +T  G + L +L+S
Sbjct: 585  FLKEAKENH-------DMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
                +D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 638  MSN-VDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 695

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L ++        S +V++       +VAT N  +L+EED   +  
Sbjct: 696  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAI-YRK 754

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            ++  +                    +       F     A    VE   + + + +   P
Sbjct: 755  ILVGSMGGANPLNRHSLPKVHFRTTDEMLTEFQFLGQDIAKRIVVENPNKVADLCEEVIP 814

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +       +        E E+ + +                   +   +RL+ ELN I  
Sbjct: 815  VKDDLYTPKIPG----SEQEITDLSYNRARELYGDPL------PEIVEKRLEKELNSING 864

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 865  NGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYS 923

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  D + E
Sbjct: 924  EFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAE 983

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  K A   V         + D    L   +       
Sbjct: 984  AHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY------ERDHNLHLRGAE------- 1030

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                                 +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1031 ---------------------IDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1069

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1070 PADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IDPKTIPTDDPE 1126

Query: 605  DHETYH-----------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +            + +  GTLGI +  +  +R  LE   P    +++ +  L    
Sbjct: 1127 VMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHG- 1185

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1186 ------TDVWLGNAEELIRRGEANLAEVIGCRDDIMVYL--------IHAGLDSGMAFKI 1231

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++  +       A K        ++    +     Y F K+HAAAY +++
Sbjct: 1232 METVRKGQWNKIPDELRDTYLNAMKENNVPDWYIDSCSKI----KYMFPKAHAAAYVLMA 1287

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1288 LRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLL 1347

Query: 805  ----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                 C +  +   +     +     + F +  + +     A+  +G   A+ I+ A  +
Sbjct: 1348 TVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREE 1407

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLE 883
            +PF S ED  +R    K+++ ++E
Sbjct: 1408 QPFLSKEDLATR---GKVSKTLIE 1428



 Score = 84.8 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 340 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 400 GVEANIVDDGVPIAYNEEHIELTDATYVVF 429


>gi|255972152|ref|ZP_05422738.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|257079586|ref|ZP_05573947.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|257082034|ref|ZP_05576395.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|257084659|ref|ZP_05579020.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|257416589|ref|ZP_05593583.1| DNA polymerase III [Enterococcus faecalis AR01/DG]
 gi|255963170|gb|EET95646.1| DNA polymerase III [Enterococcus faecalis T1]
 gi|256987616|gb|EEU74918.1| DNA polymerase III [Enterococcus faecalis JH1]
 gi|256990064|gb|EEU77366.1| DNA polymerase III [Enterococcus faecalis E1Sol]
 gi|256992689|gb|EEU79991.1| DNA polymerase III [Enterococcus faecalis Fly1]
 gi|257158417|gb|EEU88377.1| DNA polymerase III [Enterococcus faecalis ARO1/DG]
          Length = 1439

 Score =  214 bits (544), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 146/924 (15%), Positives = 293/924 (31%), Gaps = 178/924 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +      N  +               +L +T  G + L +L+S
Sbjct: 573  FLKEAKENH-------DMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
                +D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 626  MSN-VDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 683

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L ++        S +V++       +VAT N  +L+EED   +  
Sbjct: 684  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAI-YRK 742

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            ++  +                    +       F     A    VE   + + + +   P
Sbjct: 743  ILVGSMGGANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEVIP 802

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +       +        E E+ + +                   +   +RL+ ELN I  
Sbjct: 803  VKDDLYTPKIPG----SEQEITDLSYNRARELYGDPL------PEIVEKRLEKELNSING 852

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 853  NGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYS 911

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  D + E
Sbjct: 912  EFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAE 971

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  K A   V         + D    L   +       
Sbjct: 972  AHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY------ERDHNLHLRGAE------- 1018

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                                 +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1019 ---------------------IDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1057

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1058 PADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IEPKTIPTDDPE 1114

Query: 605  DHETYH-----------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +            + +  GTLGI +  +  +R  LE   P    +++ +  L    
Sbjct: 1115 VMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHG- 1173

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1174 ------TDVWLGNAEELIRRGEANLAEVIGCRDDIMVYL--------IHAGLDSGMAFKI 1219

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++  +       A K        ++    +     Y F K+HAAAY +++
Sbjct: 1220 METVRKGQWNKIPDELRDTYLNAMKENNVPDWYIDSCSKI----KYMFPKAHAAAYVLMA 1275

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1276 LRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLL 1335

Query: 805  ----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                 C +  +   +     +     + F +  + +     A+  +G   A+ I+ A  +
Sbjct: 1336 TVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREE 1395

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLE 883
            +PF S ED  +R    K+++ ++E
Sbjct: 1396 QPFLSKEDLATR---GKVSKTLIE 1416



 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 328 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 387

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 388 GVEANIVDDGVPIAYNEEHIELTDATYVVF 417


>gi|260583917|ref|ZP_05851665.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
            700633]
 gi|260158543|gb|EEW93611.1| DNA polymerase III, alpha subunit [Granulicatella elegans ATCC
            700633]
          Length = 1441

 Score =  214 bits (544), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 144/922 (15%), Positives = 299/922 (32%), Gaps = 190/922 (20%)

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            + A   G+       +    Q N  +  +            +      G + L ++VS  
Sbjct: 588  EAANDHGL-------IY-HDQLNTNLHPEEVFKNGRPFHATIFAKHQAGLKELFKVVSAS 639

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKL 177
              +    +  RI  S L E     LI  +G S G +  A      + A+++   +   ++
Sbjct: 640  N-VQYFYRVPRILRSMLIENRDSFLI-GSGCSEGEVFEAMMQKGYEEAKEKAKFYDYIEI 697

Query: 178  FGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
                +Y       L R+  +       +V+L    ++P+VAT N  +L+ ED    ++L+
Sbjct: 698  MPKAVYRPLIDKELIRNEHHLEEIIKNLVKLGEELDIPVVATGNVHYLNPEDKIYREILL 757

Query: 233  -AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPI 291
             +V +   ++  D    T +  L   + +         A E  V      +  L+V  PI
Sbjct: 758  TSVNNGQKLNYPDVHFRTTNEMLDEFAFLGEEK-----AFEVVVTNTHWVNDQLEVIIPI 812

Query: 292  LPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARM 351
                   + +      E+E+   +         +         +   +R+D EL  I   
Sbjct: 813  KDDLYTPKIEG----AEDEITKLSYDKAHEWYGE------ELPEIVEKRIDKELKSIIGN 862

Query: 352  KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------ 399
             FS  +LI    +  + ++   VG  RGS   S+ A    IT+++PL             
Sbjct: 863  GFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSLVATLTGITEVNPLAPHYRCPNCCYSE 921

Query: 400  -----------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
                                           + FE FL      +PD D++F  + + + 
Sbjct: 922  FFDDGSVGSGFDLPEKDCPKCGTRLAKDGHDIPFETFLGFYGDKVPDIDLNFSGEYQPQA 981

Query: 431  IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
              Y +  +G + V +  T G++  K A   V +  +       R  +             
Sbjct: 982  HNYTKVLFGEDYVYRAGTIGTVADKTAFGYV-KGYERDLGLEFRQAE------------- 1027

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRD 548
                                +  +++   G+ R    H  GI+       +    P+   
Sbjct: 1028 --------------------IDRLAKGCTGVKRSTGQHPGGIIVIPDYMDVYDFTPIQFP 1067

Query: 549  VRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                  +   T F+   I    ++K D LG    T+++   D         D+     + 
Sbjct: 1068 ADDQNAEWKTTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDLSG--IEPKDIPPDDPEV 1124

Query: 606  HETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
             + +            + +  GTLGI +  +  +R  LE  +P    +++ +  L     
Sbjct: 1125 MKIFGGTEVLGVTPEQIDSNTGTLGIPEFGTKFVRGMLEQTKPTTFTELLQISGLSHGTD 1184

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            +         +            +  ++     +++Y         +  G     A  + 
Sbjct: 1185 VYLGNAEELIRLHGIP-------LSEVIGCRDDIMVYL--------IHKGVENGAAFKIM 1229

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
              + K      D     + +   +N + +    +  ++      Y F K+HAAAY +++ 
Sbjct: 1230 EGVRKGKGIPED-----YQAMMRENNVPEWYIESCLKI-----KYMFPKAHAAAYVLMAL 1279

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKK------------------------------ 804
            + AW K H P+ +  A  ++   + + +                                
Sbjct: 1280 RVAWFKVHKPLLYYCAYFSVRAQDFDIVAMSQGKEMIKQRMKEIRDKGNDASTKEVNLLT 1339

Query: 805  ---FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                  +  +         +      +F +  + +     +I G+G   A  I+EA  ++
Sbjct: 1340 VLELANEMCERGFNFKMVDIEKSDAVNFVIEGDSLIAPFRSIPGLGLNVANKIVEARQEQ 1399

Query: 861  PFDSLEDFCSRVDSKKLNRRVL 882
            PF S +D  +R    K+++ ++
Sbjct: 1400 PFISKKDLATR---GKVSKTLI 1418



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 38/90 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L +H++ S+++   S ++++ + A    PA+AITD  NL S  E         I+ + 
Sbjct: 340 IELHLHTNMSVMDATNSASDLVKQAAKWGHPAVAITDHANLQSYPEAHGAGKGNNIKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N           +V 
Sbjct: 400 GLEGNIVDDQVNVAYNPQHILLEDATYVVF 429


>gi|257087409|ref|ZP_05581770.1| DNA polymerase III [Enterococcus faecalis D6]
 gi|256995439|gb|EEU82741.1| DNA polymerase III [Enterococcus faecalis D6]
          Length = 1439

 Score =  214 bits (544), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 146/924 (15%), Positives = 293/924 (31%), Gaps = 178/924 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +      N  +               +L +T  G + L +L+S
Sbjct: 573  FLKEAKENH-------DMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
                +D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 626  MSN-VDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 683

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L ++        S +V++       +VAT N  +L+EED   +  
Sbjct: 684  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAI-YRK 742

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            ++  +                    +       F     A    VE   + + + +   P
Sbjct: 743  ILVGSMGGANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEVIP 802

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +       +        E E+ + +                   +   +RL+ ELN I  
Sbjct: 803  VKDDLYTPKIPG----SEQEITDLSYNRARELYGDPL------PEIVEKRLEKELNSING 852

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 853  NGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYS 911

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  D + E
Sbjct: 912  EFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAE 971

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  K A   V         + D    L   +       
Sbjct: 972  AHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY------ERDHNLHLRGAE------- 1018

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                                 +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1019 ---------------------IDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1057

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1058 PADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IEPKTIPTDDPE 1114

Query: 605  DHETYH-----------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +            + +  GTLGI +  +  +R  LE   P    +++ +  L    
Sbjct: 1115 VMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHG- 1173

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1174 ------TDVWLGNAEELIRRGEANLAEVIGCRDDIMVYL--------IHAGLDSGMAFKI 1219

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++  +       A K        ++    +     Y F K+HAAAY +++
Sbjct: 1220 METVRKGQWNKIPDELRDTYLNAMKENNVPDWYIDSCSKI----KYMFPKAHAAAYVLMA 1275

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1276 LRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLL 1335

Query: 805  ----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                 C +  +   +     +     + F +  + +     A+  +G   A+ I+ A  +
Sbjct: 1336 TVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREE 1395

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLE 883
            +PF S ED  +R    K+++ ++E
Sbjct: 1396 QPFLSKEDLATR---GKVSKTLIE 1416



 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 328 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 387

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 388 GVEANIVDDGVPIAYNEEHIELTDATYVVF 417


>gi|293383603|ref|ZP_06629513.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|293387284|ref|ZP_06631841.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|312906153|ref|ZP_07765165.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512]
 gi|312909498|ref|ZP_07768353.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecalis DAPTO 516]
 gi|291079115|gb|EFE16479.1| DNA polymerase III, alpha subunit [Enterococcus faecalis R712]
 gi|291083321|gb|EFE20284.1| DNA polymerase III, alpha subunit [Enterococcus faecalis S613]
 gi|310627799|gb|EFQ11082.1| DNA polymerase III, alpha subunit [Enterococcus faecalis DAPTO 512]
 gi|311290171|gb|EFQ68727.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecalis DAPTO 516]
          Length = 1451

 Score =  214 bits (544), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 146/924 (15%), Positives = 293/924 (31%), Gaps = 178/924 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +      N  +               +L +T  G + L +L+S
Sbjct: 585  FLKEAKENH-------DMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
                +D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 638  MSN-VDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 695

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L ++        S +V++       +VAT N  +L+EED   +  
Sbjct: 696  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAI-YRK 754

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            ++  +                    +       F     A    VE   + + + +   P
Sbjct: 755  ILVGSMGGANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEVIP 814

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +       +        E E+ + +                   +   +RL+ ELN I  
Sbjct: 815  VKDDLYTPKIPG----SEQEITDLSYNRARELYGDPL------PEIVEKRLEKELNSING 864

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 865  NGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYS 923

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  D + E
Sbjct: 924  EFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAE 983

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  K A   V         + D    L   +       
Sbjct: 984  AHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY------ERDHNLHLRGAE------- 1030

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                                 +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1031 ---------------------IDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1069

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1070 PADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IEPKTIPTDDPE 1126

Query: 605  DHETYH-----------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +            + +  GTLGI +  +  +R  LE   P    +++ +  L    
Sbjct: 1127 VMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHG- 1185

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1186 ------TDVWLGNAEELIRRGEANLAEVIGCRDDIMVYL--------IHAGLDSGMAFKI 1231

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++  +       A K        ++    +     Y F K+HAAAY +++
Sbjct: 1232 METVRKGQWNKIPDELRDTYLNAMKENNVPDWYIDSCSKI----KYMFPKAHAAAYVLMA 1287

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1288 LRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLL 1347

Query: 805  ----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                 C +  +   +     +     + F +  + +     A+  +G   A+ I+ A  +
Sbjct: 1348 TVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREE 1407

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLE 883
            +PF S ED  +R    K+++ ++E
Sbjct: 1408 QPFLSKEDLATR---GKVSKTLIE 1428



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 340 VELHMHSNMSTMDATNKVGDLVVQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 400 GVEANIVDDGVPIAYNEEHIELTDATYVVF 429


>gi|257090543|ref|ZP_05584904.1| DNA polymerase III polC [Enterococcus faecalis CH188]
 gi|256999355|gb|EEU85875.1| DNA polymerase III polC [Enterococcus faecalis CH188]
          Length = 1439

 Score =  214 bits (544), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 146/924 (15%), Positives = 293/924 (31%), Gaps = 178/924 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +      N  +               +L +T  G + L +L+S
Sbjct: 573  FLKEAKENH-------DMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
                +D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 626  MSN-VDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 683

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L ++        S +V++       +VAT N  +L+EED   +  
Sbjct: 684  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAI-YRK 742

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            ++  +                    +       F     A    VE   + + + +   P
Sbjct: 743  ILVGSMGGANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEVIP 802

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +       +        E E+ + +                   +   +RL+ ELN I  
Sbjct: 803  VKDDLYTPKIPG----SEQEITDLSYNRARELYGDPL------PEIVEKRLEKELNSING 852

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 853  NGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYS 911

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  D + E
Sbjct: 912  EFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAE 971

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  K A   V         + D    L   +       
Sbjct: 972  AHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY------ERDHNLHLRGAE------- 1018

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                                 +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1019 ---------------------IDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1057

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1058 PADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IEPKTIPTDDPE 1114

Query: 605  DHETYH-----------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +            + +  GTLGI +  +  +R  LE   P    +++ +  L    
Sbjct: 1115 VMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHG- 1173

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1174 ------TDVWLGNAEELIRRGEANLAEVIGCRDDIMVYL--------IHAGLDSGMAFKI 1219

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++  +       A K        ++    +     Y F K+HAAAY +++
Sbjct: 1220 METVRKGQWNKIPDELRDTYLNAMKENNVPDWYIDSCSKI----KYMFPKAHAAAYVLMA 1275

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1276 LRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLL 1335

Query: 805  ----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                 C +  +   +     +     + F +  + +     A+  +G   A+ I+ A  +
Sbjct: 1336 TVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREE 1395

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLE 883
            +PF S ED  +R    K+++ ++E
Sbjct: 1396 QPFLSKEDLATR---GKVSKTLIE 1416



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AGI+ + 
Sbjct: 328 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGIKILY 387

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 388 GVEANIVDDGVPIAYNEEHIELTDATYVVF 417


>gi|307271493|ref|ZP_07552765.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855]
 gi|306511765|gb|EFM80763.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0855]
          Length = 1451

 Score =  214 bits (544), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 146/924 (15%), Positives = 293/924 (31%), Gaps = 178/924 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +      N  +               +L +T  G + L +L+S
Sbjct: 585  FLKEAKENH-------DMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
                +D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 638  MSN-VDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 695

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L ++        S +V++       +VAT N  +L+EED   +  
Sbjct: 696  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAI-YRK 754

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            ++  +                    +       F     A    VE   + + + +   P
Sbjct: 755  ILVGSMGGANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEVIP 814

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +       +        E E+ + +                   +   +RL+ ELN I  
Sbjct: 815  VKDDLYTPKIPG----SEQEITDLSYNRARELYGDPL------PEIVEKRLEKELNSING 864

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 865  NGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYS 923

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  D + E
Sbjct: 924  EFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAE 983

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  K A   V         + D    L   +       
Sbjct: 984  AHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY------ERDHNLHLRGAE------- 1030

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                                 +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1031 ---------------------IDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1069

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1070 PADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IEPKTIPTDDPE 1126

Query: 605  DHETYH-----------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +            + +  GTLGI +  +  +R  LE   P    +++ +  L    
Sbjct: 1127 VMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHG- 1185

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1186 ------TDVWLGNAEELIRRGEANLAEVIGCRDDIMVYL--------IHAGLDSGMAFKI 1231

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++  +       A K        ++    +     Y F K+HAAAY +++
Sbjct: 1232 METVRKGQWNKIPDELRDTYLNAMKENNVPDWYIDSCSKI----KYMFPKAHAAAYVLMA 1287

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1288 LRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLL 1347

Query: 805  ----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                 C +  +   +     +     + F +  + +     A+  +G   A+ I+ A  +
Sbjct: 1348 TVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREE 1407

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLE 883
            +PF S ED  +R    K+++ ++E
Sbjct: 1408 QPFLSKEDLATR---GKVSKTLIE 1428



 Score = 84.8 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 340 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 400 GVEANIVDDGVPIAYNEEHIELTDATYVVF 429


>gi|229545206|ref|ZP_04433931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322]
 gi|300860665|ref|ZP_07106752.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecalis TUSoD Ef11]
 gi|229309751|gb|EEN75738.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1322]
 gi|300849704|gb|EFK77454.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecalis TUSoD Ef11]
 gi|315035641|gb|EFT47573.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0027]
          Length = 1451

 Score =  214 bits (544), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 146/924 (15%), Positives = 293/924 (31%), Gaps = 178/924 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +      N  +               +L +T  G + L +L+S
Sbjct: 585  FLKEAKENH-------DMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
                +D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 638  MSN-VDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 695

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L ++        S +V++       +VAT N  +L+EED   +  
Sbjct: 696  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAI-YRK 754

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            ++  +                    +       F     A    VE   + + + +   P
Sbjct: 755  ILVGSMGGANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEVIP 814

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +       +        E E+ + +                   +   +RL+ ELN I  
Sbjct: 815  VKDDLYTPKIPG----SEQEITDLSYNRARELYGDPL------PEIVEKRLEKELNSING 864

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 865  NGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYS 923

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  D + E
Sbjct: 924  EFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAE 983

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  K A   V         + D    L   +       
Sbjct: 984  AHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY------ERDHNLHLRGAE------- 1030

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                                 +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1031 ---------------------IDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1069

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1070 PADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IEPKTIPTDDPE 1126

Query: 605  DHETYH-----------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +            + +  GTLGI +  +  +R  LE   P    +++ +  L    
Sbjct: 1127 VMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHG- 1185

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1186 ------TDVWLGNAEELIRRGEANLAEVIGCRDDIMVYL--------IHAGLDSGMAFKI 1231

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++  +       A K        ++    +     Y F K+HAAAY +++
Sbjct: 1232 METVRKGQWNKIPDELRDTYLNAMKENNVPDWYIDSCSKI----KYMFPKAHAAAYVLMA 1287

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1288 LRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLL 1347

Query: 805  ----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                 C +  +   +     +     + F +  + +     A+  +G   A+ I+ A  +
Sbjct: 1348 TVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREE 1407

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLE 883
            +PF S ED  +R    K+++ ++E
Sbjct: 1408 QPFLSKEDLATR---GKVSKTLIE 1428



 Score = 84.8 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 340 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 400 GVEANIVDDGVPIAYNEEHIELTDATYVVF 429


>gi|29376875|ref|NP_816029.1| DNA polymerase III PolC [Enterococcus faecalis V583]
 gi|227519898|ref|ZP_03949947.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227553915|ref|ZP_03983962.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22]
 gi|29344340|gb|AAO82099.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecalis V583]
 gi|227072692|gb|EEI10655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104]
 gi|227176901|gb|EEI57873.1| DNA-directed DNA polymerase [Enterococcus faecalis HH22]
 gi|315574385|gb|EFU86576.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309B]
 gi|315580141|gb|EFU92332.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0309A]
          Length = 1451

 Score =  214 bits (544), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 146/924 (15%), Positives = 293/924 (31%), Gaps = 178/924 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +      N  +               +L +T  G + L +L+S
Sbjct: 585  FLKEAKENH-------DMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
                +D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 638  MSN-VDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 695

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L ++        S +V++       +VAT N  +L+EED   +  
Sbjct: 696  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAI-YRK 754

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            ++  +                    +       F     A    VE   + + + +   P
Sbjct: 755  ILVGSMGGANPLNRHSLPKVHFRTTDEMLTEFQFLGQDIAKRIVVENPNKVADLCEEVIP 814

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +       +        E E+ + +                   +   +RL+ ELN I  
Sbjct: 815  VKDDLYTPKIPG----SEQEITDLSYNRARELYGDPL------PEIVEKRLEKELNSING 864

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 865  NGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYS 923

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  D + E
Sbjct: 924  EFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAE 983

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  K A   V         + D    L   +       
Sbjct: 984  AHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY------ERDHNLHLRGAE------- 1030

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                                 +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1031 ---------------------IDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1069

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1070 PADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IEPKTIPTDDPE 1126

Query: 605  DHETYH-----------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +            + +  GTLGI +  +  +R  LE   P    +++ +  L    
Sbjct: 1127 VMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHG- 1185

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1186 ------TDVWLGNAEELIRRGEANLAEVIGCRDDIMVYL--------IHAGLDSGMAFKI 1231

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++  +       A K        ++    +     Y F K+HAAAY +++
Sbjct: 1232 METVRKGQWNKIPDELRDTYLNAMKENNVPDWYIDSCSKI----KYMFPKAHAAAYVLMA 1287

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1288 LRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLL 1347

Query: 805  ----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                 C +  +   +     +     + F +  + +     A+  +G   A+ I+ A  +
Sbjct: 1348 TVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREE 1407

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLE 883
            +PF S ED  +R    K+++ ++E
Sbjct: 1408 QPFLSKEDLATR---GKVSKTLIE 1428



 Score = 84.8 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 340 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 400 GVEANIVDDGVPIAYNEEHIELTDATYVVF 429


>gi|229918664|ref|YP_002887310.1| DNA polymerase III, subunit alpha [Exiguobacterium sp. AT1b]
 gi|229470093|gb|ACQ71865.1| DNA polymerase III, alpha subunit [Exiguobacterium sp. AT1b]
          Length = 1430

 Score =  214 bits (544), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 148/910 (16%), Positives = 294/910 (32%), Gaps = 177/910 (19%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICL 133
             ++    +L                 +     + G + L EL+S  ++ D   +  R+  
Sbjct: 577  FEMTTHRSLNAKVGSDVSKIRPFHATIYAKNKKPGLRHLYELISLSHI-DYLYRMARMPR 635

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NL 186
            S L +   EGL++ +   +G I  A    S    EK +  +   ++    LY       +
Sbjct: 636  SELVKR-REGLLIGSACDNGEIFDAALNKSDDELEKMMSFYDFIEIHPPALYHHLIDKEI 694

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
              +    R    +++++A   ELP+ AT N  +L   D    ++L+            + 
Sbjct: 695  VANELELREIIKRIIRVAEKAELPVCATGNVHYLDRSDRSYREILIRTQGGANFINTRKE 754

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                             F     A E  +      +  ++    I       + +     
Sbjct: 755  LPHAHFRTTKEMMEEFKFLGDDLAREIVITNPNAIADQIESIQIIPDDLYTPKIEG---- 810

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             ++E+RN +           +I      +    RL+ EL  I    F+  +LI    ++ 
Sbjct: 811  ADDEVRNMSYDMAR------SIYGDELPEIVEARLEKELKSIIGHGFAVIYLISHKLVKK 864

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            +  +   VG  RGS   S+ A    IT+++PL                            
Sbjct: 865  SLDDGYLVG-SRGSVGSSLVATMTEITEVNPLPPHYVCPNCQHSHFFNDGSVGSGYDLPD 923

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL      +PD D++F  + +     Y +  +G E V +
Sbjct: 924  KECPECGTWYKKDGHDIPFETFLGFKGDKVPDIDLNFSGEYQPHAHAYTKVLFGEEYVYR 983

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V                       +      I  ++         
Sbjct: 984  AGTIGTIADKTAYGYVK---------------------GYATENDKIYRNAEVDRLVS-- 1020

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRSD---LPVTQFNM 560
                        + G+ R    H  GI+       ++ + P+      +      T F+ 
Sbjct: 1021 -----------GVTGVKRTTGQHPGGIIVVPDYMDIADISPIQYPADDNSSEWKTTHFDF 1069

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY----------- 609
              I    L+K D LG    T+++   D          +        + +           
Sbjct: 1070 HSIHD-NLLKLDILGHDDPTVIRMLQDLSG--IDPKTIPTDDPTVMKIFSSPEVLGVTPE 1126

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             + +  GTLGI +  +  +RQ LE  +P    +++ +  L                N  E
Sbjct: 1127 QIESKTGTLGIPEFGTKFVRQMLEETKPSTFSELVQISGLSHG-------TDVWLGNANE 1179

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I +    +  ++     +++Y         + +G   S A  +  ++ K      +   
Sbjct: 1180 LIYNGTCELKDVIGCRDDIMVYL--------IYAGLEPSFAFKIMESVRKGKGLTEE--- 1228

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
                S   +N + +    +  ++      Y F K+HA AY +++ + A+ K H+P+ + A
Sbjct: 1229 --MESEMRENDVPEWYISSCKKI-----KYMFPKAHATAYVLMAVRIAYFKVHHPILYYA 1281

Query: 790  ASMTLEMDNVE---------------------------------KIKKFCQDARQFNIQI 816
               T+   + +                                  + +   +  +  ++ 
Sbjct: 1282 TYFTVRAGDFDLSAMIKGPQAVRKAMSDIREKGFDATAKDKGLHTVLELALEMLERGMKF 1341

Query: 817  MPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +      +F + DN +     A+ G+GT  A+ I+EA  +  F S ED   R    
Sbjct: 1342 QNIDLYRSSATEFLIEDNTLIPPFNAVDGLGTNAAKAIVEAREEGQFLSKEDLRKRA--- 1398

Query: 876  KLNRRVLESL 885
            KL++ V+E+L
Sbjct: 1399 KLSKTVIETL 1408



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 33/90 (36%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++   +++ ++ + A     AIAITD   + +  E         I+ + 
Sbjct: 324 VELHAHTQMSQMDAVTNVSALVARAAKWGHRAIAITDHAGVQAFPEAYYAGKKNDIKVLY 383

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         +           +V 
Sbjct: 384 GVEANVVNDGVPVAYHATDVALEDATYVVF 413


>gi|229549448|ref|ZP_04438173.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|256853720|ref|ZP_05559085.1| DNA polymerase III PolC [Enterococcus faecalis T8]
 gi|257421977|ref|ZP_05598967.1| DNA polymerase III polC [Enterococcus faecalis X98]
 gi|294779462|ref|ZP_06744860.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecalis PC1.1]
 gi|307270863|ref|ZP_07552150.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248]
 gi|307277206|ref|ZP_07558310.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134]
 gi|307291051|ref|ZP_07570937.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411]
 gi|312953417|ref|ZP_07772257.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102]
 gi|229305685|gb|EEN71681.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 29200]
 gi|256710663|gb|EEU25706.1| DNA polymerase III PolC [Enterococcus faecalis T8]
 gi|257163801|gb|EEU93761.1| DNA polymerase III polC [Enterococcus faecalis X98]
 gi|294453468|gb|EFG21872.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecalis PC1.1]
 gi|306497900|gb|EFM67431.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0411]
 gi|306506136|gb|EFM75302.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2134]
 gi|306512776|gb|EFM81421.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4248]
 gi|310628626|gb|EFQ11909.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0102]
 gi|315030983|gb|EFT42915.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4000]
 gi|315146013|gb|EFT90029.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2141]
 gi|315146659|gb|EFT90675.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX4244]
 gi|315152085|gb|EFT96101.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0031]
 gi|315155311|gb|EFT99327.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0043]
 gi|315159111|gb|EFU03128.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0312]
 gi|315161731|gb|EFU05748.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0645]
 gi|315166431|gb|EFU10448.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1341]
 gi|315173645|gb|EFU17662.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1346]
 gi|323481337|gb|ADX80776.1| DNA polymerase III, alpha subunit, Gram-positive type [Enterococcus
            faecalis 62]
 gi|327535664|gb|AEA94498.1| DNA polymerase III PolC [Enterococcus faecalis OG1RF]
 gi|329569948|gb|EGG51703.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1467]
          Length = 1451

 Score =  213 bits (543), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 146/924 (15%), Positives = 293/924 (31%), Gaps = 178/924 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +      N  +               +L +T  G + L +L+S
Sbjct: 585  FLKEAKENH-------DMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
                +D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 638  MSN-VDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 695

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L ++        S +V++       +VAT N  +L+EED   +  
Sbjct: 696  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAI-YRK 754

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            ++  +                    +       F     A    VE   + + + +   P
Sbjct: 755  ILVGSMGGANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEVIP 814

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +       +        E E+ + +                   +   +RL+ ELN I  
Sbjct: 815  VKDDLYTPKIPG----SEQEITDLSYNRARELYGDPL------PEIVEKRLEKELNSING 864

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 865  NGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYS 923

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  D + E
Sbjct: 924  EFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAE 983

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  K A   V         + D    L   +       
Sbjct: 984  AHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY------ERDHNLHLRGAE------- 1030

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                                 +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1031 ---------------------IDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1069

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1070 PADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IEPKTIPTDDPE 1126

Query: 605  DHETYH-----------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +            + +  GTLGI +  +  +R  LE   P    +++ +  L    
Sbjct: 1127 VMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHG- 1185

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1186 ------TDVWLGNAEELIRRGEANLAEVIGCRDDIMVYL--------IHAGLDSGMAFKI 1231

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++  +       A K        ++    +     Y F K+HAAAY +++
Sbjct: 1232 METVRKGQWNKIPDELRDTYLNAMKENNVPDWYIDSCSKI----KYMFPKAHAAAYVLMA 1287

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1288 LRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLL 1347

Query: 805  ----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                 C +  +   +     +     + F +  + +     A+  +G   A+ I+ A  +
Sbjct: 1348 TVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREE 1407

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLE 883
            +PF S ED  +R    K+++ ++E
Sbjct: 1408 QPFLSKEDLATR---GKVSKTLIE 1428



 Score = 84.8 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 340 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 400 GVEANIVDDGVPIAYNEEHIELTDATYVVF 429


>gi|312899805|ref|ZP_07759124.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470]
 gi|311293055|gb|EFQ71611.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0470]
          Length = 1451

 Score =  213 bits (543), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 146/924 (15%), Positives = 293/924 (31%), Gaps = 178/924 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +      N  +               +L +T  G + L +L+S
Sbjct: 585  FLKEAKENH-------DMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
                +D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 638  MSN-VDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 695

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L ++        S +V++       +VAT N  +L+EED   +  
Sbjct: 696  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAI-YRK 754

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            ++  +                    +       F     A    VE   + + + +   P
Sbjct: 755  ILVGSMGGANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEVIP 814

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +       +        E E+ + +                   +   +RL+ ELN I  
Sbjct: 815  VKDDLYTPKIPG----SEQEITDLSYNRARELYGDPL------PEIVEKRLEKELNSING 864

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 865  NGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYS 923

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  D + E
Sbjct: 924  EFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAE 983

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  K A   V         + D    L   +       
Sbjct: 984  AHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY------ERDHNLHLRGAE------- 1030

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                                 +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1031 ---------------------IDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1069

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1070 PADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IEPKTIPTDDPE 1126

Query: 605  DHETYH-----------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +            + +  GTLGI +  +  +R  LE   P    +++ +  L    
Sbjct: 1127 VMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHG- 1185

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1186 ------TDVWLGNAEELIRRGEANLAEVIGCRDDIMVYL--------IHAGLDSGMAFKI 1231

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++  +       A K        ++    +     Y F K+HAAAY +++
Sbjct: 1232 METVRKGQWNKIPDELRDTYLNAMKENNVPDWYIDSCSKI----KYMFPKAHAAAYVLMA 1287

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1288 LRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLL 1347

Query: 805  ----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                 C +  +   +     +     + F +  + +     A+  +G   A+ I+ A  +
Sbjct: 1348 TVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREE 1407

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLE 883
            +PF S ED  +R    K+++ ++E
Sbjct: 1408 QPFLSKEDLATR---GKVSKTLIE 1428



 Score = 84.8 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 340 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 400 GVEANIVDDGVPIAYNEEHIELTDATYVVF 429


>gi|315150171|gb|EFT94187.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0012]
          Length = 1451

 Score =  213 bits (543), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 146/924 (15%), Positives = 293/924 (31%), Gaps = 178/924 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +      N  +               +L +T  G + L +L+S
Sbjct: 585  FLKEAKENH-------DMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
                +D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 638  MSN-VDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 695

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L ++        S +V++       +VAT N  +L+EED   +  
Sbjct: 696  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAI-YRK 754

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            ++  +                    +       F     A    VE   + + + +   P
Sbjct: 755  ILVGSMGGANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEVIP 814

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +       +        E E+ + +                   +   +RL+ ELN I  
Sbjct: 815  VKDDLYTPKIPG----SEQEITDLSYNRARELYGDPL------PEIVEKRLEKELNSING 864

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 865  NGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYS 923

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  D + E
Sbjct: 924  EFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAE 983

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  K A   V         + D    L   +       
Sbjct: 984  AHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY------ERDHNLHLRGAE------- 1030

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                                 +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1031 ---------------------IDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1069

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1070 PADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IEPKTIPTDDPE 1126

Query: 605  DHETYH-----------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +            + +  GTLGI +  +  +R  LE   P    +++ +  L    
Sbjct: 1127 VMRIFEGPEVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHG- 1185

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1186 ------TDVWLGNAEELIRRGEANLAEVIGCRDDIMVYL--------IHAGLDSGMAFKI 1231

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++  +       A K        ++    +     Y F K+HAAAY +++
Sbjct: 1232 METVRKGQWNKIPDELRDTYLNAMKENNVPDWYIDSCSKI----KYMFPKAHAAAYVLMA 1287

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1288 LRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLL 1347

Query: 805  ----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                 C +  +   +     +     + F +  + +     A+  +G   A+ I+ A  +
Sbjct: 1348 TVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREE 1407

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLE 883
            +PF S ED  +R    K+++ ++E
Sbjct: 1408 QPFLSKEDLATR---GKVSKTLIE 1428



 Score = 84.8 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 340 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 400 GVEANIVDDGVPIAYNEEHIELTDATYVVF 429


>gi|307287733|ref|ZP_07567776.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109]
 gi|306501471|gb|EFM70774.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0109]
 gi|315032873|gb|EFT44805.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0017]
          Length = 1451

 Score =  213 bits (543), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 146/924 (15%), Positives = 293/924 (31%), Gaps = 178/924 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +      N  +               +L +T  G + L +L+S
Sbjct: 585  FLKEAKENH-------DMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
                +D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 638  MSN-VDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 695

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L ++        S +V++       +VAT N  +L+EED   +  
Sbjct: 696  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAI-YRK 754

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            ++  +                    +       F     A    VE   + + + +   P
Sbjct: 755  ILVGSMGGANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEVIP 814

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +       +        E E+ + +                   +   +RL+ ELN I  
Sbjct: 815  VKDDLYTPKIPG----SEQEITDLSYNRARELYGDPL------PEIVEKRLEKELNSING 864

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 865  NGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYS 923

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  D + E
Sbjct: 924  EFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAE 983

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  K A   V         + D    L   +       
Sbjct: 984  AHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY------ERDHNLHLRGAE------- 1030

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                                 +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1031 ---------------------IDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1069

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1070 PADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IEPKTIPTDDPE 1126

Query: 605  DHETYH-----------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +            + +  GTLGI +  +  +R  LE   P    +++ +  L    
Sbjct: 1127 VMRIFEGPEVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHG- 1185

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1186 ------TDVWLGNAEELIRRGEANLAEVIGCRDDIMVYL--------IHAGLDSGMAFKI 1231

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++  +       A K        ++    +     Y F K+HAAAY +++
Sbjct: 1232 METVRKGQWNKIPDELRDTYLNAMKENNVPDWYIDSCSKI----KYMFPKAHAAAYVLMA 1287

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1288 LRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLL 1347

Query: 805  ----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                 C +  +   +     +     + F +  + +     A+  +G   A+ I+ A  +
Sbjct: 1348 TVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREE 1407

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLE 883
            +PF S ED  +R    K+++ ++E
Sbjct: 1408 QPFLSKEDLATR---GKVSKTLIE 1428



 Score = 84.8 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 340 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 400 GVEANIVDDGVPIAYNEEHIELTDATYVVF 429


>gi|21314372|gb|AAM46912.1|AF508325_1 DNA polymerase III C [Enterococcus faecalis]
          Length = 1439

 Score =  213 bits (543), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 147/924 (15%), Positives = 293/924 (31%), Gaps = 178/924 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +      N  +               +L +T  G + L +L+S
Sbjct: 573  FLKEAKENH-------DMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 625

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
                +D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 626  MSN-VDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 683

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L ++        S +V++       +VAT N  +L+EED   +  
Sbjct: 684  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAI-YRK 742

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            ++  +                    +       F     A    VE   + + + +   P
Sbjct: 743  ILVGSMGGANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEVIP 802

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +       +        E E+ + +                   +   +RL+ ELN I  
Sbjct: 803  VKDDLYTPKIPG----SEQEITDLSYNRARELYGDPL------PEIVEKRLEKELNSING 852

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  FLI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 853  NGFSVIFLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYS 911

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  D + E
Sbjct: 912  EFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAE 971

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  K A   V         + D    L   +       
Sbjct: 972  AHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY------ERDHNLHLRGAE------- 1018

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                                 +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1019 ---------------------IDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1057

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1058 PADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IEPKTIPTDDPE 1114

Query: 605  DHETYH-----------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +            + +  GTLGI +  +  +R  LE   P    +++ +  L    
Sbjct: 1115 VMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHG- 1173

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1174 ------TDVWLGNAEELIRRGEANLAEVIGCRDDIMVYL--------IHAGLDSGMAFKI 1219

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++  +       A K        ++    +     Y F K+HAAAY +++
Sbjct: 1220 METVRKGQWNKIPDELRDTYLNAMKENNVPDWYIDSCSKI----KYMFPKAHAAAYVLMA 1275

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1276 LRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLL 1335

Query: 805  ----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                 C +  +   +     +     + F +  + +     A+  +G   A+ I+ A  +
Sbjct: 1336 TVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREE 1395

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLE 883
            +PF S ED  +R    K+++ ++E
Sbjct: 1396 QPFLSKEDLATR---GKVSKTLIE 1416



 Score = 84.8 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 328 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 387

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 388 GVEANIVDDGVPIAYNEEHIELTDATYVVF 417


>gi|315170319|gb|EFU14336.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1342]
          Length = 1451

 Score =  213 bits (543), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 146/924 (15%), Positives = 293/924 (31%), Gaps = 178/924 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +      N  +               +L +T  G + L +L+S
Sbjct: 585  FLKEAKENH-------DMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
                +D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 638  MSN-VDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 695

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L ++        S +V++       +VAT N  +L+EED   +  
Sbjct: 696  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAI-YRK 754

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            ++  +                    +       F     A    VE   + + + +   P
Sbjct: 755  ILVGSMGGANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEVIP 814

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +       +        E E+ + +                   +   +RL+ ELN I  
Sbjct: 815  VKDDLYTPKIPG----SEQEITDLSYNRARELYGDPL------PEIVEKRLEKELNSING 864

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 865  NGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYS 923

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  D + E
Sbjct: 924  EFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAE 983

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  K A   V         + D    L   +       
Sbjct: 984  AHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY------ERDHNLHLRGAE------- 1030

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                                 +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1031 ---------------------IDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1069

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1070 PADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IEPKTIPTDDPE 1126

Query: 605  DHETYH-----------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +            + +  GTLGI +  +  +R  LE   P    +++ +  L    
Sbjct: 1127 VMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHG- 1185

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1186 ------TDVWLGNAEELIRRGEANLAEVIGCRDDIMVYL--------IHAGLDSGMAFKI 1231

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++  +       A K        ++    +     Y F K+HAAAY +++
Sbjct: 1232 METVRKGQWNKIPDELRDTYLNAMKENNVPDWYIDSCSKI----KYMFPKAHAAAYVLMA 1287

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1288 LRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLL 1347

Query: 805  ----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                 C +  +   +     +     + F +  + +     A+  +G   A+ I+ A  +
Sbjct: 1348 TVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREE 1407

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLE 883
            +PF S ED  +R    K+++ ++E
Sbjct: 1408 QPFLSKEDLATR---GKVSKTLIE 1428



 Score = 84.8 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 340 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 400 GVEANIVDDGVPIAYNEEHIELTDATYVVF 429


>gi|315025440|gb|EFT37372.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX2137]
          Length = 1451

 Score =  213 bits (543), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 146/924 (15%), Positives = 293/924 (31%), Gaps = 178/924 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +      N  +               +L +T  G + L +L+S
Sbjct: 585  FLKEAKENH-------DMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
                +D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 638  MSN-VDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 695

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L ++        S +V++       +VAT N  +L+EED   +  
Sbjct: 696  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAI-YRK 754

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            ++  +                    +       F     A    VE   + + + +   P
Sbjct: 755  ILVGSMGGANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEVIP 814

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +       +        E E+ + +                   +   +RL+ ELN I  
Sbjct: 815  VKDDLYTPKIPG----SEQEITDLSYNRARELYGDPL------PEIVEKRLEKELNSING 864

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 865  NGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYS 923

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  D + E
Sbjct: 924  EFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAE 983

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  K A   V         + D    L   +       
Sbjct: 984  AHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY------ERDHNLHLRGAE------- 1030

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                                 +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1031 ---------------------IDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1069

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1070 PADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IEPKTIPTDDPE 1126

Query: 605  DHETYH-----------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +            + +  GTLGI +  +  +R  LE   P    +++ +  L    
Sbjct: 1127 VMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHG- 1185

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1186 ------TDVWLGNAEELIRRGEANLAEVIGCRDDIMVYL--------IHAGLDSGMAFKI 1231

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++  +       A K        ++    +     Y F K+HAAAY +++
Sbjct: 1232 METVRKGQWNKIPDELRDTYLNAMKENNVPDWYIDSCSKI----KYMFPKAHAAAYVLMA 1287

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1288 LRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLL 1347

Query: 805  ----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                 C +  +   +     +     + F +  + +     A+  +G   A+ I+ A  +
Sbjct: 1348 TVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREE 1407

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLE 883
            +PF S ED  +R    K+++ ++E
Sbjct: 1408 QPFLSKEDLATR---GKVSKTLIE 1428



 Score = 84.8 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 340 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 400 GVEANIVDDGVPIAYNEEHIELTDATYVVF 429


>gi|312903703|ref|ZP_07762877.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635]
 gi|310632895|gb|EFQ16178.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0635]
 gi|315578694|gb|EFU90885.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX0630]
          Length = 1451

 Score =  213 bits (543), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 146/924 (15%), Positives = 293/924 (31%), Gaps = 178/924 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +      N  +               +L +T  G + L +L+S
Sbjct: 585  FLKEAKENH-------DMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
                +D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 638  MSN-VDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 695

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L ++        S +V++       +VAT N  +L+EED   +  
Sbjct: 696  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAI-YRK 754

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            ++  +                    +       F     A    VE   + + + +   P
Sbjct: 755  ILVGSMGGANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEVIP 814

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +       +        E E+ + +                   +   +RL+ ELN I  
Sbjct: 815  VKDDLYTPKIPG----SEQEITDLSYNRARELYGDPL------PEIVEKRLEKELNSING 864

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 865  NGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYS 923

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  D + E
Sbjct: 924  EFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAE 983

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  K A   V         + D    L   +       
Sbjct: 984  AHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY------ERDHNLHLRGAE------- 1030

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                                 +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1031 ---------------------IDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1069

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1070 PADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IEPKTIPTDDPE 1126

Query: 605  DHETYH-----------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +            + +  GTLGI +  +  +R  LE   P    +++ +  L    
Sbjct: 1127 VMRIFEGPDVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHG- 1185

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1186 ------TDVWLGNAEELIRRGEANLAEVIGCRDDIMVYL--------IHAGLDSGMAFKI 1231

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++  +       A K        ++    +     Y F K+HAAAY +++
Sbjct: 1232 METVRKGQWNKIPDELRDTYLNAMKENNVPDWYIDSCSKI----KYMFPKAHAAAYVLMA 1287

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1288 LRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLL 1347

Query: 805  ----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                 C +  +   +     +     + F +  + +     A+  +G   A+ I+ A  +
Sbjct: 1348 TVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREE 1407

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLE 883
            +PF S ED  +R    K+++ ++E
Sbjct: 1408 QPFLSKEDLATR---GKVSKTLIE 1428



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AGI+ + 
Sbjct: 340 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGIKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 400 GVEANIVDDGVPIAYNEEHIELTDATYVVF 429


>gi|167770615|ref|ZP_02442668.1| hypothetical protein ANACOL_01961 [Anaerotruncus colihominis DSM
            17241]
 gi|167667210|gb|EDS11340.1| hypothetical protein ANACOL_01961 [Anaerotruncus colihominis DSM
            17241]
          Length = 1445

 Score =  213 bits (543), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 158/909 (17%), Positives = 295/909 (32%), Gaps = 186/909 (20%)

Query: 90   KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG 149
                      ++LV    G + L  L+S  +L D   +  RI  S L E   EGL++ + 
Sbjct: 610  DVKKSPTYHQIILVKNLTGLKNLYRLISISHL-DYYAKRPRIPKSKLIE-HREGLLIGSA 667

Query: 150  GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RY 195
              +G + RA     S      +  F        Y+ +Q     +              R 
Sbjct: 668  CEAGQLYRAIVEGKSWGDLCDIARFYD------YLEIQPVANNEYMVRSNMVADEQAIRE 721

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
                VV+L     +P+VAT +  F+   D +   +LMA             +        
Sbjct: 722  FNETVVRLGERLNIPVVATCDVHFMDPGDAKFRAILMAGM----GFADADQQAPLYFRTT 777

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
            +       +    +A E  +E     + +++   PI             ++ +   R KA
Sbjct: 778  DEMLKEFEYLGAQKAHEVVIENPNLIADMVENIKPIPDGTFTPTIPGSDEDLQRITRAKA 837

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
            +             +G   +   +RL+ EL  I +  F+  ++I    +  +++    VG
Sbjct: 838  ME--------LYGYQGQVPELVSKRLERELGSIIKHGFAVLYMIAQKLVAKSEEGGYHVG 889

Query: 376  PGRGSGAGSVTAYALTITDIDPLR------------------------------------ 399
              RGS   S  A    I++++PL                                     
Sbjct: 890  -SRGSVGSSFVATMAGISEVNPLPPHYYCPDCHYSEFITDGSVGSGFDLPEKACPMCGAT 948

Query: 400  -----FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D    PD D++F  + + ++ +Y +  +G   V +  T  ++  
Sbjct: 949  YKQDGHDIPFETFLGFDGDKAPDIDLNFSGEYQAQIHKYTEELFGPTHVFKAGTISTVAE 1008

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V +  Q                    + +    ++                  +
Sbjct: 1009 KTAYGFVKKYAQE-----------------RGLIMTRAEEE-----------------RL 1034

Query: 515  SQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLI 569
            +    G+ R    H  G+V    D  +     + R   D  SD+  T F+   +    ++
Sbjct: 1035 AIGCTGVKRTTGQHPGGMVVVPSDHEVFDFSAVQRPADDPNSDITTTHFDFHSLHDT-IL 1093

Query: 570  KFDFLGLKTLTLLQK----------SLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
            K D LG    T+ +            +    Q+ + + LS       E   +    GTLG
Sbjct: 1094 KLDELGHDVPTMYKYLKDMTGIDANDVPMNDQKVMSLFLSPEALGVTE-EEIDCNTGTLG 1152

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            I +  ++ +R  L   QP    D++ +  L          V+                + 
Sbjct: 1153 IPEFGTNFVRGMLIEAQPKNFSDLLQISGLSH-----GTDVWLGNAQ----------ELI 1197

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
                 T   +I     +    L  G     A  +     K    +     E  ++   ++
Sbjct: 1198 KNKVCTISNVIGTRDSIMTYLLHKGLEPKMAFKIMEITRKGNAPK--LLTEEHMTAMREH 1255

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G+ +    +  ++      Y F K+HAAAY + S +  W K ++P+ F A   T+   + 
Sbjct: 1256 GVPQWYIDSCLKI-----KYMFPKAHAAAYDIASIRLCWFKVYHPLAFYAVIFTVRGGDF 1310

Query: 800  E---------------------------------KIKKFCQDARQFNIQIMPPSVNTPCV 826
            +                                  + +   + +      +P  +     
Sbjct: 1311 DAEAAVQGKSATKRKIQNLLQMGNERTAKDEGVLTMLQIIHECQARGYSFLPVDLYKSHY 1370

Query: 827  D-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
              ++V D +I     A+KGVG   AR + E +  + F S +D  +R     +++ V+E L
Sbjct: 1371 SIYEVEDGKIRLPFMALKGVGEAAARSLWETAKTEQFISADDISNRA---GVSKSVIEML 1427

Query: 886  VFAGALDCF 894
              AGAL   
Sbjct: 1428 RGAGALGDL 1436



 Score = 79.4 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE---FSQKACAAG-- 66
           V L +HS+ S ++G      ++ +       A+AITD   + +  +      K   +G  
Sbjct: 336 VELHMHSNMSAMDGITPAAKLIKRAYEFGHKAVAITDHGVVQAFPDCMNAVAKIRKSGGD 395

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
           I+ I G +          ++      F +
Sbjct: 396 IKVIYGVEAYFVDDVVQAVSGNAHGRFDS 424


>gi|315164832|gb|EFU08849.1| DNA polymerase III, alpha subunit [Enterococcus faecalis TX1302]
          Length = 1451

 Score =  213 bits (543), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 146/924 (15%), Positives = 293/924 (31%), Gaps = 178/924 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +      N  +               +L +T  G + L +L+S
Sbjct: 585  FLKEAKENH-------DMHFHDDLNRHIGEGDSYKRARPFHATILATTQAGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
                +D   +  RI  S L ++  EGL++ +  S+G I  A      + A+ R   +   
Sbjct: 638  MSN-VDYFFRVPRIPRSQLSKL-REGLLIGSACSNGEIFEAMMQKGVEEAKNRAKFYDYI 695

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L ++        S +V++       +VAT N  +L+EED   +  
Sbjct: 696  EVMPKPVYAPLIEQELVKNEADLEEIISNLVKIGDELGKLVVATGNVHYLNEEDAI-YRK 754

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            ++  +                    +       F     A    VE   + + + +   P
Sbjct: 755  ILVGSMGGANPLNRHSLPKVHFRTTDEMLTEFQFLGQDVAKRIVVENPNKVADLCEEVIP 814

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +       +        E E+ + +                   +   +RL+ ELN I  
Sbjct: 815  VKDDLYTPKIPG----SEQEITDLSYNRARELYGDPL------PEIVEKRLEKELNSING 864

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 865  NGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYS 923

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  D + E
Sbjct: 924  EFYEDGSYGSGFDMPEKACPKCGARLFKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAE 983

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  K A   V         + D    L   +       
Sbjct: 984  AHNYTKVLFGEEYVYRAGTIGTVADKTAYGFVKGY------ERDHNLHLRGAE------- 1030

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                                 +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1031 ---------------------IDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1069

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1070 PADDQEAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IEPKTIPTDDPE 1126

Query: 605  DHETYH-----------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +            + +  GTLGI +  +  +R  LE   P    +++ +  L    
Sbjct: 1127 VMRIFEGPEVLGVDAEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHG- 1185

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1186 ------TDVWLGNAEELIRRGEANLAEVIGCRDDIMVYL--------IHAGLDSGMAFKI 1231

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++  +       A K        ++    +     Y F K+HAAAY +++
Sbjct: 1232 METVRKGQWNKIPDELRDTYLNAMKENNVPDWYIDSCSKI----KYMFPKAHAAAYVLMA 1287

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K ++P+ +  A  ++  D+ + +                               
Sbjct: 1288 LRVAYFKVYFPILYYCAFFSVRADDFDLVAMSQGKEAVKARMKEITDKGMDASTKEKNLL 1347

Query: 805  ----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                 C +  +   +     +     + F +  + +     A+  +G   A+ I+ A  +
Sbjct: 1348 TVLELCNEMLERGYKFGMIDLYKSDAENFVIEGDTLIAPFRAVPSLGLNVAKAIVAAREE 1407

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLE 883
            +PF S ED  +R    K+++ ++E
Sbjct: 1408 QPFLSKEDLATR---GKVSKTLIE 1428



 Score = 84.8 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++    + +++ +       AIAITD     +  +       AG++ + 
Sbjct: 340 VELHMHSNMSTMDATNKVGDLVAQAGKWGHKAIAITDHGGAQAFPDAHAAGKKAGVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 400 GVEANIVDDGVPIAYNEEHIELTDATYVVF 429


>gi|328957406|ref|YP_004374792.1| DNA polymerase III PolC [Carnobacterium sp. 17-4]
 gi|328673730|gb|AEB29776.1| DNA polymerase III PolC [Carnobacterium sp. 17-4]
          Length = 1446

 Score =  213 bits (543), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 151/935 (16%), Positives = 298/935 (31%), Gaps = 183/935 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A           ++    Q N  +               ++ ++  G + L +LVS
Sbjct: 585  FLKEAKEEH-------EMFYHDQLNEHIGEGDAYKRARPFHATIMATSQAGLKNLFKLVS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
               +++   ++ R+  S L ++  EGLI+ T  S G +  A        A+ +   +   
Sbjct: 638  -SSMVNYFFRTARLPRSELNKL-REGLIIGTACSQGEVFEAMMQKGYDEAKNKAKFYDYI 695

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L  +          +V++     +P+VAT N  +L+ ED     +
Sbjct: 696  EVMPKEVYAPLIEQELVTNESDLEEIIRNLVKIGKELNIPVVATGNVHYLNPEDSIYRKI 755

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            L+                               F     A +  VE   + + +++    
Sbjct: 756  LINSQGGA-NPLNRAELPEVHFRTTTEMLETFSFLGKETAQQIVVENTNKIADMVEDG-- 812

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             +            +  E+E+R  +                   +   +R++ ELN I  
Sbjct: 813  -ITPVKTDLYTPKIEGSEDEIRQLSYDEAHRLYGNPL------PEIIEKRIEKELNSIIG 865

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  +  +   VG  RGS   S  A    IT+++P+            
Sbjct: 866  NGFSVIYLISQKLVHKSMSDGYLVG-SRGSVGSSFVATMTGITEVNPMPPHYTCPNCQFS 924

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  D + +
Sbjct: 925  EFFTDGSVGSGYDLPDKNCPKCEARLHKDGHDIPFETFLGFYGDKVPDIDLNFSGDYQAK 984

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  + A   V         + D    L   +       
Sbjct: 985  AHNYTKELFGEEYVFRAGTIGTVADRTAFGYVKGY------ERDNNLTLRAAE------- 1031

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                                 +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1032 ---------------------IDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQF 1070

Query: 548  DVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                  S+   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1071 PADAQDSEWKTTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDLSG--VDPKTIPTDDPE 1127

Query: 605  DHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              + +            + +  GTLGI +  +  +R  LE   P    +++ +  L    
Sbjct: 1128 VMKIFGGTEVLGVTPEQIQSKTGTLGIPEFGTRFVRGMLEETMPTTFAELLQISGLSHG- 1186

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I   +  +  ++     +++Y         + +G     A  +
Sbjct: 1187 ------TDVWLGNAEELIRMNNIPLSEVIGCRDDIMVYL--------IHNGLEDGIAFKI 1232

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
              ++ K      D     +        I +    +  ++      Y F K+HAAAY +++
Sbjct: 1233 MESVRKGKGIPDD-----WQKAMRDQKIPEWYIESCLKI-----KYMFPKAHAAAYVLMA 1282

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K H+P+ + AA  ++  D+ + +                               
Sbjct: 1283 LRVAYYKVHFPILYYAAYFSVRADDFDLVAMAKGKESLKLKMKEITDKGLDASTKEKNTL 1342

Query: 805  ----FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                 C +  +         +      +F +  N +     A+  +G   A+ I EA  D
Sbjct: 1343 TVLELCNEMVERGFNFKMVDLEKSDPTNFVIEGNSLIAPFRAVPSLGANVAKQIKEARND 1402

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            KPF S ED   R    K+++ V+E L   G L   
Sbjct: 1403 KPFLSKEDLAKR---GKVSKTVIEYLNENGVLKGL 1434



 Score = 89.5 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/312 (16%), Positives = 101/312 (32%), Gaps = 24/312 (7%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA---LEFSQKACAAGIQ 68
           V L +HS+ S ++   ++ +++D+ A     A+AITD    F A    +        GI+
Sbjct: 340 VELHLHSNMSQMDATNTVVDLVDQAAKWGHKAVAITDH---FGAQSFPDAFHAGQKNGIK 396

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG----YQRLIELVSRMYLLDQ 124
            + G + +I         N           +V  V T  G    Y  +IEL      +  
Sbjct: 397 ILYGIEANIVDDGVPIAYNPEHIELSEAIYVVFDVET-TGLSAVYNSIIELS----AVKM 451

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            K ++        + G   L   T   +G  D     + S+  E+ L  FK+  GD   +
Sbjct: 452 HKGNIIESFEQFIDPGHP-LSQTTINLTGITDEMVHGSKSE--EEVLTLFKEFAGDH--I 506

Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +  +  +D    +        H +P  ATN  +   E     H    +   +T+  +  
Sbjct: 507 LVAHNASFDMGFLNTSNA---KHNIPD-ATNPVIDTLELSRFLHPQYKSHRLNTLAKKYG 562

Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                    + +      +     +  +   E+         +      +        I 
Sbjct: 563 INLEQHHRAIFDSETTGQLCWLFLKEAKEEHEMFYHDQLNEHIGEGDAYKRARPFHATIM 622

Query: 305 KEEENELRNKAV 316
              +  L+N   
Sbjct: 623 ATSQAGLKNLFK 634


>gi|299534745|ref|ZP_07048075.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1]
 gi|298729833|gb|EFI70378.1| DNA polymerase III polC-type [Lysinibacillus fusiformis ZC1]
          Length = 1443

 Score =  213 bits (543), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 157/926 (16%), Positives = 304/926 (32%), Gaps = 189/926 (20%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVP--SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            +L I   D+      G   +         +L     G + L ++VS  +      +  R+
Sbjct: 593  ELAIKYHDDFNKHIGGGDAYKKGRPMHCTILAVDNAGLKNLFKIVSHSHTKT-FYRVPRV 651

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ---- 187
              + L++   EGL++ +G S+G +       S + AEK    +        Y+ +Q    
Sbjct: 652  TRAVLEQY-REGLLVGSGCSNGEVFETMMNKSPEEAEKVARFYD-------YIEVQPKAV 703

Query: 188  ------RHRGYDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
                  R+   D +       ++V+L    + P+VAT N  +L   D     +L+     
Sbjct: 704  YAPLIERNVVRDEWTLEDIIRKLVKLGKKLDKPVVATGNVHYLDPTDGMFRQILIGSQGG 763

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                              +       F     A E  V  A++ +  +    PI      
Sbjct: 764  A-NILNRSKLPEVHFRTTDEMLKEFDFLGPDLAKEVVVTNAQKVAASIGDVKPIKDDLYT 822

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
             + +      ++E+ N           +         +  + R++ EL  I    F   +
Sbjct: 823  PKIEG----SDDEVTNLTYEMAHRIYGE------ELPEIVKARIEKELKSILGHGFGVIY 872

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI A  ++ +  +   VG  RGS   S+ A  + IT+++PL                   
Sbjct: 873  LISAKLVKKSLADGYLVG-SRGSVGSSLVATFMEITEVNPLPPHYICPSCKHSEFFDDGS 931

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  + + +   Y + 
Sbjct: 932  VSSGFDLPNKDCTECGTPYKKDGQDIPFETFLGFKGDKVPDIDLNFSGEYQPQAHNYTKV 991

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V +     ++   R  +                   
Sbjct: 992  LFGEDYVFRAGTIGTVAEKTAYGYV-KGYASDHNLHFRGAE------------------- 1031

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS--- 551
                          +  + Q   G+ R    H  GI  V     +    P+     +   
Sbjct: 1032 --------------VDRLVQGCTGVKRTTGQHPGGIIVVPDYMDIYDFSPVQFPADAQDA 1077

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPF 603
            +   T F+   I    ++K D LG    T+++   D              V + +   P 
Sbjct: 1078 EWRTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPVVMKIFSSPE 1136

Query: 604  DDHETYHLL-TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
                T   +    GTLGI +  +  +RQ LE  +P    +++ +  L             
Sbjct: 1137 SLGVTEKQIGCKTGTLGIPEFGTRFVRQMLEDTKPSTFSELVQISGLSHG-------TDV 1189

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
               N +E I +   ++  ++     +++Y         +  G   S A  +  ++ K   
Sbjct: 1190 WLGNAQELIQNGTCVLKEVIGCRDDIMVYL--------IYQGLEPSLAFKIMESVRKGKG 1241

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
               +     F +    N +      +  ++      Y F K+HAAAY +++ + AW K H
Sbjct: 1242 LSEE-----FEAEMLANKVPGWYIESCKKI-----KYMFPKAHAAAYVLMAVRIAWFKVH 1291

Query: 783  YPVEFLAASMTLEMDNVEKIKK---------------------------------FCQDA 809
            +P+ + AA  T+  D+ + I                                      + 
Sbjct: 1292 FPILYYAAYFTVRADDFDLIAMVQGSQMIRARIDEINMKGLDASTKEKNLLTVLELALEM 1351

Query: 810  RQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
             +  +      +      +F +  N +     AI G+GT  A+ I+ A  +  F S ED 
Sbjct: 1352 CERGMSFQKVDLYRSQASEFVIDGNSLIPPFDAIPGLGTNVAKTIVAAREEGEFLSKEDL 1411

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCF 894
              R    ++++ ++E +   G L+  
Sbjct: 1412 QQR---GRVSKTLIEYMDQLGCLEGM 1434



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ + A    PAIAITD   + S  E        GI+ I 
Sbjct: 342 VELHLHTPMSQMDAVTPVDRLVAQAAKWGHPAIAITDHAVVQSFPEAYAAGKKHGIKIIY 401

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++                     +V 
Sbjct: 402 GLEANLVDDGVPIAYAPEHRLLADTTYVVF 431


>gi|307692373|ref|ZP_07634610.1| DNA polymerase III PolC [Ruminococcaceae bacterium D16]
          Length = 1396

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 153/920 (16%), Positives = 298/920 (32%), Gaps = 195/920 (21%)

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
               +G         +++L     G + L +L+S  +L +  K+   +  S + E   EGL
Sbjct: 550  KLRKGGKARRQPKHLIVLAKNQTGLRNLYKLISLAHL-EHFKRYPIMPKSVINE-NREGL 607

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ--------------RHR 190
            I+ +   +G + +A   +      KR+ ++        ++ +Q              R  
Sbjct: 608  IIGSACEAGELFQAVTADKDWEELKRIASWYD------FLEIQPICNNMFMLRKGMVRSE 661

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
               R     VV+L      P+ AT +  FL  ED     +L+A    +   +     +  
Sbjct: 662  EELRDFNRTVVRLGEELGKPVCATGDVHFLDPEDEIYRHILLA----SKGFEDADEALPI 717

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                 +       +    +A E  V+     +       P+       + +D     + E
Sbjct: 718  YFKTTDEMLQEFAYLGKEKAYEVVVKNTNLIADWCDPIKPLPQGLFAPKLED----SDGE 773

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L+                      Q    R++ EL  I R K+   ++     +Q + ++
Sbjct: 774  LKRLVWGKAHELYGD------EPPQIVVDRINVELGDIIRCKYDVIYMSAQKLVQNSLEH 827

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------- 399
               VG  RGS   S+ A+   IT+++ L                                
Sbjct: 828  GYLVG-SRGSVGSSLVAFMSGITEVNSLPAHYRCPKCKHSDFDYAQDPAHPYGCGADMPD 886

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                          F++ FE FL      +PD D++F  + +    RY    +G   V +
Sbjct: 887  AVCPICGTPYMKDGFNIPFETFLGFGGDKVPDIDLNFSGEYQSSAHRYTFELFGQTHVFR 946

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V + L                +     S    A+++R        
Sbjct: 947  AGTIGTVAEKTAFGYVKKYLD---------------ERGKMASK---AEENRL------- 981

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYR---DVRSDLPVTQFNM 560
                     +    G+ R    H  G+V+  +   +    P+     D  SD+  T F  
Sbjct: 982  ---------AIGCTGVKRTTGQHPGGMVVIPQDKEIYDFCPVQHPADDPNSDIVTTHFEY 1032

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFL----------AQRGVKVDLSLIPFDDHETYH 610
              +E   L+K D LG    T+++   D              +             +E   
Sbjct: 1033 HSMES-NLLKLDMLGHDDPTMIRMLEDLTGVNARTDIPLDDKDTMSIFQSSKALGYENDK 1091

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +L   G   I +  +S +R  LE  QPD  + ++ L                   N K+ 
Sbjct: 1092 ILGPTGGTAIPEFGTSFVRGMLEDTQPDQFDILVRLSGFSHG-------TDVWLGNAKDL 1144

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            I S    +   +     ++++   + +       + + EA    R + +           
Sbjct: 1145 ITSGTAKVSEAIGCRDDIMLFL--ISKGMDPKRSFKIMEAVRKGRGLPEG---------- 1192

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                   ++G+ +    +  ++      Y F K+HA AY +++++ AW K H P+ F AA
Sbjct: 1193 -AEDEMREHGVPEWYIGSCKKI-----AYLFPKAHAVAYVMMAFRIAWFKVHRPLAFYAA 1246

Query: 791  SMT--------------LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF-------- 828
              +              +++   +  +   +D     ++    +    C +F        
Sbjct: 1247 YFSIRAKAFDEAYMCRGMDVCQKKMREIIAKDKDASAVEQDMLTTLEVCYEFYLRGFTFR 1306

Query: 829  --------------KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                           + +N +     ++ G+G T A  + E    K F S+E+       
Sbjct: 1307 RMDIYQSDAIHFKMDLENNALIPPFVSVAGLGETAAISLAEQRKGKNFISIEEVA--AAC 1364

Query: 875  KKLNRRVLESLVFAGALDCF 894
             K+++  +E L  AGA    
Sbjct: 1365 PKVSKTHIELLKEAGAFGDL 1384



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 10/106 (9%)

Query: 5   LEKSP-SFVHLQVHSSYSLLEG--ALSLN-----NILDKIAADQQPAIAITDTNNLFSAL 56
           ++ +P   V L +H++ S ++   A+        N++ +  A    AIAITD     S  
Sbjct: 271 MDNAPEKRVELHLHTTMSAMDALTAVGPKLGPERNVVKRAEAWGHRAIAITDHGVAQSFP 330

Query: 57  EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           +    A    I+ + G +       + ++   G+        IV  
Sbjct: 331 DAWHSAK--NIKLLYGVEAYFINDVDDRVVVHGQPCQDFSQEIVCF 374


>gi|257869605|ref|ZP_05649258.1| DNA polymerase III PolC [Enterococcus gallinarum EG2]
 gi|257803769|gb|EEV32591.1| DNA polymerase III PolC [Enterococcus gallinarum EG2]
          Length = 1449

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 140/922 (15%), Positives = 280/922 (30%), Gaps = 178/922 (19%)

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            +     G        + +    N  +  +            +L  T  G + L +L+S  
Sbjct: 585  EAMEKHG--------MLLHEDLNRHVGGENSFKAARPFHATILAKTQAGLKNLFKLISMS 636

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKL 177
             +     +  RI  S L ++  EGL++ T    G +  A        A K    +   ++
Sbjct: 637  NVKYFHDKVPRIPRSELVKL-REGLLVGTACDKGEVFVAMMQKGVDAARKLAEFYDYIEV 695

Query: 178  FGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
                +Y       L ++          ++++       +VAT N  +L+EED     +L+
Sbjct: 696  MPKEVYAHLIETELVKNESDLEDIIRNLIEIGNELGKVVVATGNVHYLNEEDAIYRKILI 755

Query: 233  AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPIL 292
                                   +       F     A E  V    + + + +   P+ 
Sbjct: 756  NSMGGA-NPLNRHSLPAVHFRTTDEMLTAFQFLGPDTAKEIVVTNPNKIADMCEKVIPVK 814

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
                  +        E E+ + +    +              +   +RL  EL+ I    
Sbjct: 815  DDLYTPKIPG----SEQEITDLSYNRAKELYGDPL------PEIVEKRLKKELDSIIGNG 864

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------- 399
            FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL              
Sbjct: 865  FSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPDCQYSEF 923

Query: 400  ----------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
                                          + FE FL      +PD D++F  + + E  
Sbjct: 924  YEDGSYGSGYDMPEKKCPKCGTRLNKDGHDIPFETFLGFHGDKVPDIDLNFSGEYQPEAH 983

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             Y +  +G + V +  T G++  K A   V                              
Sbjct: 984  NYTKVLFGEDYVYRAGTIGTVADKTAFGFV------------------------------ 1013

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDV 549
                  F            +  +++   G+ R    H  GI+       +    P+    
Sbjct: 1014 ----KGFERDHNLHYRAAEVDRLAKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPA 1069

Query: 550  RS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                 +   T F+   I    ++K D LG    T+++   D          +     +  
Sbjct: 1070 DDMNSEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IDPKTIPTDDPEVM 1126

Query: 607  ETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
              +            + +  GTLGI +  +  +R  LE   P    +++ +  L      
Sbjct: 1127 RIFGGTDVLGVTEEQIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHG--- 1183

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
                      N +E I      +  ++     +++Y         + +G     A  +  
Sbjct: 1184 ----TDVWLGNAEELIRRGDANLAEVIGCRDDIMVYL--------IHAGLDDGMAFKIME 1231

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
             + K    ++          A +        ++    +     Y F K+HAAAY +++ +
Sbjct: 1232 TVRKGQWNKIPDDLRDTYLQAMRENNVPEWYIDSCSKI----KYMFPKAHAAAYVLMALR 1287

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVEKIKK------------------------------- 804
             A+ K ++P+ +  A  ++  D+ + I                                 
Sbjct: 1288 VAYFKVYFPILYYCAYFSVRADDFDLIAMSKGKEAVKERMQEINDKGMDASTKEKNLLTV 1347

Query: 805  --FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
                 +  +   +     +     + F +  N++     A+  +G   A+ I EA  D P
Sbjct: 1348 LELANEMLERGYEFGMIDLYKSDAENFVIDGNKLIAPFRAVPSLGLNVAKQICEARKDGP 1407

Query: 862  FDSLEDFCSRVDSKKLNRRVLE 883
            F S ED  +R    K+++ ++E
Sbjct: 1408 FLSKEDLANR---GKVSKTLIE 1426



 Score = 83.7 bits (205), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++   ++++++ +       AIAITD     +  +       AG++ + 
Sbjct: 337 VELHLHSNMSTMDATNNISDLVAQAGKWGHKAIAITDHGGAQAFPDAHHAGEKAGVKILY 396

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N    P      IV 
Sbjct: 397 GVEANIVDDGVAVAYNPKPVPLTDATYIVF 426


>gi|3930523|gb|AAC80434.1| DNA polymerase III [Thermotoga maritima]
          Length = 842

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 205/788 (26%), Positives = 328/788 (41%), Gaps = 103/788 (13%)

Query: 196 RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-------AHSTVVSQKDRPRV 248
           R  ++  L     L  V   +  F +   +        +           +   ++R   
Sbjct: 17  RFEKLALLLKRKGLKSVILADRNFHAAVKFNTIMRKHGLIPVHGLWKDGRIFVARNREEF 76

Query: 249 TPDHYLKNRSEMVSIFS-----------DLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                  N                       +A E    I  R  F L       P   E
Sbjct: 77  DSLVRYYNGETHEIEDIPVFQESELTPVRYLDASEKKASIFMRKIFGLDEDVQGFPEKCE 136

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA-QDYRQRLDFELNVIARMKFSGY 356
              D +  E  +   N           +  I K     ++Y  RL  EL VI R  F+ Y
Sbjct: 137 DVADILNAEAYDLRVNHRFPTPPKNWNELLIKKAEPLGEEYISRLKRELEVIKRKGFTPY 196

Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
              V   ++ AKK  I VGPGRGS  GS+ AY   IT++DP+++ LLFERFLN +R   P
Sbjct: 197 IYTVEKVVEIAKKMGIKVGPGRGSAVGSLVAYLCGITEVDPIKYDLLFERFLNEERQEPP 256

Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
           D D+D    RR ++I+ +   +   +V Q+ TFG+L  K+    +               
Sbjct: 257 DIDVDVEDRRRKDLIKELSKSF---QVYQVSTFGNLTEKSLKNLI--------------- 298

Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
                     +   ++ + +   +     P                   S HAAG+VI +
Sbjct: 299 -------NSVLPDASLEEKNEIYKTVYGLPHH----------------PSVHAAGVVISE 335

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            PL    P+      D+P+T ++M  +++ G++K D LGLKTL+ ++             
Sbjct: 336 NPL----PLPTRTEEDIPITDYDMYDLQEIGVVKIDILGLKTLSFMKDFKK--------- 382

Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
              +  + D +TYHL++   TLG+FQLE    R+    + P  ++++  L++L RPGP+ 
Sbjct: 383 --EIFDYSDEKTYHLISKGKTLGVFQLEGLQARKLCRRISPRNMDELSILLALNRPGPLR 440

Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
           + +      +              M  ET+GV+IYQEQ+M++A + +G S +EAD+LRRA
Sbjct: 441 SGLDVMFSNSKNVPAFF-----RKMFPETRGVLIYQEQIMRLA-MFAGLSGTEADILRRA 494

Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
           + KK +E+M+   E+   G  + G+    A  I E+L  F+ Y FNKSH+ AYA I+YQT
Sbjct: 495 IAKKEREKMEPLLEKMKKGLLEKGM--ENAEQILEILLNFSSYAFNKSHSVAYAHITYQT 552

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
           A++K H+  EF          +  KI    Q+ R    ++ PP +N    D       +Y
Sbjct: 553 AYLKAHHLEEFFKLYFAYNSSDAGKIFLAVQELRNEGYRVHPPDINISGKDLVFHGKDVY 612

Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L  +KGVG T    I +     P  S+ +   RV    + R V+ESL+ AGA D    
Sbjct: 613 LPLTVVKGVGVTLVEQIEKIR---PVSSVRELQERV--TGVPRNVVESLITAGAFDKLYE 667

Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
           +R   L+ L+   +      +       ++F  +    S  I +   +            
Sbjct: 668 NRKLALEELNKRVEKDILEIR-------SLFGEKVEQESSNIKIGDITELEEK------- 713

Query: 957 RVLGFYFS 964
             +GF  +
Sbjct: 714 -SMGFPLT 720



 Score = 44.8 bits (104), Expect = 0.086,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 16 VHSSYSLLEG-ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          V S YS  +G  +    +   +      ++ + D  N  +A++F+      G+ P+ G
Sbjct: 5  VISPYSF-DGSVVRFEKLALLLKRKGLKSVILADR-NFHAAVKFNTIMRKHGLIPVHG 60


>gi|317498937|ref|ZP_07957220.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893770|gb|EFV15969.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 1228

 Score =  213 bits (541), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 145/920 (15%), Positives = 283/920 (30%), Gaps = 182/920 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            +EF        I        D+D  +     N        +   ++LV    G   L  L
Sbjct: 358  VEFISMLKEKDIT-------DLDQVNEFANDNVDLIKKGRMYHGIILVKNNTGRVNLNRL 410

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  +L +   +  R+  S + +   +GLI+ +   +G + +A     S      +++F 
Sbjct: 411  VSESHL-NYFNRRPRMPKSLINKY-RDGLIIGSACEAGELYQALLDERSDETIANIVSFY 468

Query: 176  KLFGDRLYVNLQRHRGYD-----------------RYRESQVVQLAYTHELPLVATNNSL 218
                   Y+ +Q     +                 +    ++V L      P+VAT +  
Sbjct: 469  D------YLEIQPVGNNEFMIGSERVENVNSIEDIQKFNQKIVDLGEQFHKPVVATCDVH 522

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            FL+ +D     +L+A        +    +                +    +A E  +   
Sbjct: 523  FLNPDDAIYRSILLAG----KGFKDADQQAPLYFRTTQEMLDEFAYLGSEKAKEVVITNT 578

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
             + + +++  +PI P        D  K     LR                      +   
Sbjct: 579  NKINDMIENISPIHPDKCPPVIPDSDKT----LREICYNRAHEIYGDDL------PERVT 628

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             RL+ ELN I    ++  ++I    +  +  +   VG  RGS   S  A    IT+++PL
Sbjct: 629  SRLEKELNSIIGNGYAVMYIIAQKLVWDSNDHGYLVG-SRGSVGSSFAATMSGITEVNPL 687

Query: 399  RFS-----------------------------------------------LLFERFLNPD 411
                                                              + FE FL   
Sbjct: 688  PAHYICPECHFVDFDSEQVQKYAKMGMSGFDMPDAYCPKCGAKMTKEGQDIPFETFLGFK 747

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
                PD D++F  + + +   YV+  +G  +  +  T G+L  K A   V +        
Sbjct: 748  GNKEPDIDLNFSGEYQGKAHAYVEVIFGKGKAFRAGTIGTLAEKTAYGYVLK-------- 799

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                      +         I                     ++    G+ R    H  G
Sbjct: 800  -------YLEERGISKRRCEIER-------------------LALGCTGVKRTTGQHPGG 833

Query: 532  IVIGDRP--LSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            I++      +     +           +T           L+K D LG    +++++   
Sbjct: 834  IIVVPHDKEIYDFTAVQHPANDMNTPIITTHFEYHSIDQNLLKLDILGHDDPSMIRRM-- 891

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
               +    +D   IP DD     L     TLGI   +  G      G+     + +I ++
Sbjct: 892  ---EDITGIDAQTIPMDDKGVMGLFHGTETLGITPEDIDGTPLGSLGVPEFGTDFVIQML 948

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
                P    ++V  +   +G +  +     +           I     + +  +  G   
Sbjct: 949  QDTHPQSFSDLVRISGLSHGTDVWLGNAQTLIENGDAVISTAICCRDDIMVYLINQGLEQ 1008

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              +  +   + K      +++         ++       +   + +     Y F K+HAA
Sbjct: 1009 EASFKIMEGVRKGKGLTDEQE------QMMRDHNVPDWYIWSCKQI----KYMFPKAHAA 1058

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------- 804
            AY +++++ AW K ++P+ + AA  ++                                 
Sbjct: 1059 AYVMMAWRIAWYKVYHPLAYYAAYFSIRAKAFSYEDMCLGKERLDEKMSIIKNTPKHEVK 1118

Query: 805  -----------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARH 852
                          +      +  P  +      DF+V D +I  +L +I G+G   A+ 
Sbjct: 1119 NADLDLLREMKIADEMYARGYEFWPLDIYKAKAKDFQVIDGKIMPALTSIDGMGEKAAQQ 1178

Query: 853  IMEASADKPFDSLEDFCSRV 872
            + EA+  +PF SLE+F +R 
Sbjct: 1179 VEEAAKGEPFTSLENFRNRT 1198



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 9/99 (9%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL---EFSQK 61
           +EK    V L +H+  S  +  + + +I+++      PA+AITD   L          + 
Sbjct: 107 MEKR---VELHLHTVMSDNDSVVQIKDIVNRAYEWGHPAVAITDHGVLQGFPIARHAYED 163

Query: 62  AC-AAG--IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
                    + I G +          + +          
Sbjct: 164 LRLKEDDPFKIIYGVEGYFVDDLGDLIIDSKGQSLMDSY 202


>gi|294784973|ref|ZP_06750261.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium
            sp. 3_1_27]
 gi|294486687|gb|EFG34049.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium
            sp. 3_1_27]
          Length = 1449

 Score =  213 bits (541), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 157/894 (17%), Positives = 309/894 (34%), Gaps = 157/894 (17%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS-----G 153
            I++LV T  G + +  LVS  ++   G +  RI  S L E   EGLI+ +  ++     G
Sbjct: 612  IMVLVKTQAGLKNMYRLVSEAHIKYFGNKKARIPKSVLVE-NREGLIIGSSLTAHFMNTG 670

Query: 154  PIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYVNLQ------RHRGYDR--YRESQVVQL 203
             +   +  +  +  E+    +   +L     Y  L           Y+           L
Sbjct: 671  ELADLYLRHDLEKLEEAAKFYDYIELLPKSTYNELIEKDGTGALGSYEEVEKMNKYFYDL 730

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                 + + A++N  +L E +     +L+  +    V    +  +    Y +   EM+  
Sbjct: 731  GKRLGILVTASSNVHYLDENEDIIRSILLYGSG--TVYNSRQYSINNGFYFRTTDEMLKE 788

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            FS L E +   V +    + I  +    +    E       +  E  +R           
Sbjct: 789  FSYLGEDVAKEV-VVTNTNKIADMIESGIRPIPEGFYPPKMENAEEIVRTMTYEKAYRIY 847

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                            RL+ ELN I    FS  +L     ++ +  N   VG  RGS   
Sbjct: 848  GDPL------PDIVSARLERELNAIINNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGS 900

Query: 384  SVTAYALTITDIDPLR-----------------------------------------FSL 402
            S+ A+ + IT+++ L                                          +S+
Sbjct: 901  SLVAFMMGITEVNALYPHYICDNPECKYSEFIEREGVGIDLPDKICPKCNAKLRKDGYSI 960

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE F+      +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V 
Sbjct: 961  PFEVFMGFKGDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAEAYVR 1020

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            +                              +D+     R     + RL + ++K     
Sbjct: 1021 K----------------------------YFEDNNLNAVRAEIIRLGRLCQGAKKTT--- 1049

Query: 523  RHASTHAAGIVIGDR--PLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLK 577
                 H  G+VI  +   + +  P+ R    +      T ++   +++  L+K D LG  
Sbjct: 1050 ---GQHPGGMVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDE-QLVKLDILGHD 1105

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGM 635
              T ++     L Q    +++  IP  D +T  + ++  +LG+   Q+ +      +   
Sbjct: 1106 DPTTIK-----LLQEYTNMEIKDIPLADKDTLKIFSSTESLGVTPEQIGTEIGTYGIPEF 1160

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
                +  +   +   RP     +V  +   +G    ++         + T   II     
Sbjct: 1161 GTGFVRQM---LIDTRPTTFAELVRISGLSHGTNVWLNNAQEFVRNGQATLSQIITVRDD 1217

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            +    +  G   S+A  +   + K   ++  +  E++ +   +  +      +   +   
Sbjct: 1218 IMNYLIDQGLDNSDAFKIMEFVRKGKPKKEPENWEKYSTMMKEKNVPDWYIESCRRI--- 1274

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK-------------- 801
              +Y F K HA AY +++ + A+ K H P+ F AA ++ + D+ +               
Sbjct: 1275 --EYMFPKGHAVAYVMMAMRIAYFKVHQPLAFYAAFLSRKADDFDMEVMSRGILAKQKLE 1332

Query: 802  -----------------IKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIK 843
                             I +   +     ++++P  +       F + DN+I   L  I 
Sbjct: 1333 ELSKEPKLDPKKKNEQAICEIVVEMEARGLELLPVDIYLSDGKKFTIEDNKIRIPLIGIN 1392

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            G+G      I++   +  F S+ED   R    K+ + V++ L   GA+     +
Sbjct: 1393 GLGGAVIDAIVKEREEGKFISVEDLKRRT---KIQQPVVDKLKNIGAISSLSET 1443



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
           V L  H+  S + G   + +I+ +       AIAITD + + S     +           
Sbjct: 331 VELHAHTKMSEMVGVTDVEDIIKRAKEYGHKAIAITDYSVVHSYPAAFKTTKKLSTDEEK 390

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           ++ I GC++ +   +   +TN           +V 
Sbjct: 391 MKAIFGCEMYMIDDEAPMVTNPKNKKIDDEEFVVF 425


>gi|15643227|ref|NP_228271.1| DNA polymerase III, alpha subunit, putative [Thermotoga maritima
           MSB8]
 gi|7227889|sp|Q9ZHG4|DPO3A_THEMA RecName: Full=DNA polymerase III subunit alpha
 gi|4980970|gb|AAD35546.1|AE001724_4 DNA polymerase III, alpha subunit, putative [Thermotoga maritima
           MSB8]
          Length = 842

 Score =  213 bits (541), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 205/788 (26%), Positives = 328/788 (41%), Gaps = 103/788 (13%)

Query: 196 RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-------AHSTVVSQKDRPRV 248
           R  ++  L     L  V   +  F +   +        +           +   ++R   
Sbjct: 17  RFEKLALLLKRKGLKSVILADRNFHAAVKFNTIMRKHGLIPVHGLWKDGRIFVARNREEF 76

Query: 249 TPDHYLKNRSEMVSIFS-----------DLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                  N                       +A E    I  R  F L       P   E
Sbjct: 77  DSLVRYYNGETHEIEDIPVFQESELTPVRYLDASEKKASIFMRKIFGLDEDVQGFPEKCE 136

Query: 298 KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA-QDYRQRLDFELNVIARMKFSGY 356
              D +  E  +   N           +  I K     ++Y  RL  EL VI R  F+ Y
Sbjct: 137 DVADILNAEAYDLRVNHRFPTPPKNWNELLIKKAEPLGEEYISRLKRELEVIKRKGFTPY 196

Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
              V   ++ AKK  I VGPGRGS  GS+ AY   IT++DP+++ LLFERFLN +R   P
Sbjct: 197 IYTVEKVVEIAKKMGIKVGPGRGSAVGSLVAYLCGITEVDPIKYDLLFERFLNEERQEPP 256

Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
           D D+D    RR ++I+ +   +   +V Q+ TFG+L  K+    +               
Sbjct: 257 DIDVDVEDRRRKDLIKELSKSF---QVYQVSTFGNLTEKSLKNLI--------------- 298

Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
                     +   ++ + +   +     P                   S HAAG+VI +
Sbjct: 299 -------NSVLPDASLEEKNEIYKTVYGLPHH----------------PSVHAAGVVISE 335

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            PL    P+      D+P+T ++M  +++ G++K D LGLKTL+ ++             
Sbjct: 336 NPL----PLPTRTEEDIPITDYDMYDLQEIGVVKIDILGLKTLSFIKDFKK--------- 382

Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
              +  + D +TYHL++   TLG+FQLE    R+    + P  ++++  L++L RPGP+ 
Sbjct: 383 --EIFDYSDEKTYHLISKGKTLGVFQLEGLQARKLCRRISPRNMDELSILLALNRPGPLR 440

Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
           + +      +              M  ET+GV+IYQEQ+M++A + +G S +EAD+LRRA
Sbjct: 441 SGLDVMFSNSKNVPAFF-----RKMFPETRGVLIYQEQIMRLA-MFAGLSGTEADILRRA 494

Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
           + KK +E+M+   E+   G  + G+    A  I E+L  F+ Y FNKSH+ AYA I+YQT
Sbjct: 495 IAKKEREKMEPLLEKMKKGLLEKGM--ENAEQILEILLNFSSYAFNKSHSVAYAHITYQT 552

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
           A++K H+  EF          +  KI    Q+ R    ++ PP +N    D       +Y
Sbjct: 553 AYLKAHHLEEFFKLYFAYNSSDAGKIFLAVQELRNEGYRVHPPDINISGKDLVFHGKDVY 612

Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             L  +KGVG T    I +     P  S+ +   RV    + R V+ESL+ AGA D    
Sbjct: 613 LPLTVVKGVGVTLVEQIEKIR---PVSSVRELQERV--TGVPRNVVESLITAGAFDKLYE 667

Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
           +R   L+ L+   +      +       ++F  +    S  I +   +            
Sbjct: 668 NRKLALEELNKRVEKDILEIR-------SLFGEKVEQESSNIKIGDITELEEK------- 713

Query: 957 RVLGFYFS 964
             +GF  +
Sbjct: 714 -SMGFPLT 720



 Score = 44.8 bits (104), Expect = 0.086,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 16 VHSSYSLLEG-ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          V S YS  +G  +    +   +      ++ + D  N  +A++F+      G+ P+ G
Sbjct: 5  VISPYSF-DGSVVRFEKLALLLKRKGLKSVILADR-NFHAAVKFNTIMRKHGLIPVHG 60


>gi|154502558|ref|ZP_02039618.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149]
 gi|153796750|gb|EDN79170.1| hypothetical protein RUMGNA_00371 [Ruminococcus gnavus ATCC 29149]
          Length = 1503

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 176/978 (17%), Positives = 310/978 (31%), Gaps = 202/978 (20%)

Query: 36   IAADQQP------AIAITDTNNLFSA-----LEFSQKACAAGIQPIIGCQLDIDMQDNLK 84
              A          A+   D      A     ++F +      I         +   +   
Sbjct: 598  AKALGISLENHHRAV---DD---AGATAEIFVKFVEMLKDRNIT-------TLKEMNRFG 644

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
              N           I++LV    G   L +L+S  +L     +  RI  S L +   EGL
Sbjct: 645  DMNVNAIRKLPTHHIIILVKNDIGRFNLYQLISASHLT-YFARRPRIPKSLLNQ-HREGL 702

Query: 145  IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD----------- 193
            I+ +   +G + +A     S  A  RL  F        Y  +Q                 
Sbjct: 703  IIGSACEAGELYQAILNQKSPQAVARLAEFYD------YYEIQPLGNNQFMIDSDRYGDI 756

Query: 194  ------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
                  +    ++V L    + P+VAT +  FL  ED     ++MA          D   
Sbjct: 757  NSKEDLQNINREIVSLGEKFKKPVVATCDVHFLDPEDEVYRRIIMA---GKGFGDAD--- 810

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              P  YL+   EM+  FS L  A     EI       +      +      +C  + +  
Sbjct: 811  TQPPLYLRTTDEMLEEFSYLGSA--KAREIVIDNPNRICDMVEKISPVNPNKCPPVIENS 868

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E  LR+           +         +  + RL+ EL  I    +S  ++I    +  +
Sbjct: 869  EQNLRDICYNKAHEIYGENL------PEPVQTRLERELTSIISNGYSVMYIIAQKLVWKS 922

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
              +   VG  RGS   S  A    IT+++PL                             
Sbjct: 923  NDDGYLVG-SRGSVGSSFVATMAGITEVNPLSPHYYCSECHYSDFDSEEVRAFAGGCGFD 981

Query: 400  -----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
                             F + FE FL       PD D++F  D + +  RY +  +G   
Sbjct: 982  MPDKNCPNCGAKLVKAGFDIPFETFLGFKGDKEPDIDLNFSGDYQAKAHRYTEVIFGEGH 1041

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
              +  T G+L  K A   V    +                                   R
Sbjct: 1042 TFKAGTIGTLADKTAFGYVKNYYE----------------------------------ER 1067

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRSDLP--VTQF 558
                    +  I Q   G+ R    H  GIV       +++  P+           +T  
Sbjct: 1068 GHRKRKCEIDRILQGCTGIRRSTGQHPGGIVVLPHGHDINEFTPVQHPANDMTTDIITTH 1127

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQ--------KSLDFLAQRGVKVDLSLIPFDDHETYH 610
                     L+K D LG    T+++         +L+         D + IP DD +   
Sbjct: 1128 FDYHSIDHNLLKLDILGHDDPTMIRTLEEYITSDALENEYNDENPFDATKIPLDDKKVLS 1187

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L      LGI   +  G      G+     + +I +V    P  + +++  +   +G   
Sbjct: 1188 LFHDTSALGIKPEDIDGCNLGCLGIPEFGTDFVIQMVQDANPQSLSDLIRISGLSHGTNV 1247

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +    ++    K T    I     + I  +  G   + +  +  ++ K    + +    
Sbjct: 1248 WLGNAQVLIESGKATISTAICTRDDIMIYLINQGVDSALSFTIMESVRKGKGLKPE---- 1303

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                   +  + +    + +    K   Y F K+HAAAY +++Y+ A+ K +YP+ +  A
Sbjct: 1304 ------WEETMKEKDVPDWYIWSCKQISYMFPKAHAAAYVMMAYRIAYCKINYPLAYYGA 1357

Query: 791  SM---------------------------------TLEMDNVEKIKKFCQDARQFNIQIM 817
                                               + +  +V K  K  Q+      + +
Sbjct: 1358 YFGIRANAFSYELMCQGKDKLNYYMKDYKRRSDSLSNKEQDVLKDMKIVQEMYARGYEFL 1417

Query: 818  PPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            P  +       F++ D ++   L++I+G+G   A  + EA+ D P+ SL+DF  R    K
Sbjct: 1418 PLDIYKAKATKFQIIDGKLMPPLSSIEGMGEKAAEAVEEAAKDGPYLSLDDFRQRT---K 1474

Query: 877  LNRRVLESLVFAGALDCF 894
            +++ V+E +   G     
Sbjct: 1475 VSKTVIEFMSDLGLFGNL 1492



 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 4/90 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--SQKACAAG--I 67
           V L  H+  S ++G   + +I+ +      PAIAITD     S  +     +        
Sbjct: 378 VELHCHTKMSDMDGVSEVKSIVKRAHDWGHPAIAITDHGVAQSFPDANHYIETLDKDDPF 437

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           + I G +  +         N G+       
Sbjct: 438 KVIYGVEGYVVDDLTEIAVNAGEQTLDDTY 467


>gi|315641197|ref|ZP_07896274.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952]
 gi|315482964|gb|EFU73483.1| DNA polymerase III PolC [Enterococcus italicus DSM 15952]
          Length = 1445

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 146/925 (15%), Positives = 301/925 (32%), Gaps = 185/925 (20%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A           ++ +    N  +  +            +LV T +G + L +L+S
Sbjct: 584  FVKEAMEHH-------KMFLHEDLNRHVGGENSYRAARPFHATILVQTQKGLKNLFKLIS 636

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
               +     +  RI  S L ++  EGLI+ +G   G +  A      + A+K    +   
Sbjct: 637  MSNVTYFHDKVPRIPRSELVKL-REGLIVGSGCDKGEVFVAMMQKGVEAAKKLAEFYDYI 695

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L ++        + ++Q+      P+VAT N  +L+EED     +
Sbjct: 696  EIMPKPVYAPLIEQELIKNEADLEEIITNLIQIGDELNKPVVATGNVHYLNEEDSIYRKI 755

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHA 289
            L+        +  +R  +   H+      +          A E  V          +   
Sbjct: 756  LINSMGG--ANPLNRHSLPKVHFRTTDDMLREFDFLGSERAQEVVVTNPNALVDRCETVV 813

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
            P+  +    +        E E+   +    +                  +RL+ EL+ I 
Sbjct: 814  PVKDKLYTPKIPG----SEEEITQLSYTRAKELYGDPL------PDIVEKRLEKELHSII 863

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------- 399
               FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL           
Sbjct: 864  GNGFSVIYLISQKLVHKSNQDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPNCQY 922

Query: 400  -------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRD 428
                                             + FE FL      +PD D++F  + + 
Sbjct: 923  SEFYEDGSFGSGFDMPEKKCPKCDARLKKDGHDIPFETFLGFHGDKVPDIDLNFSGEYQP 982

Query: 429  EVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS 488
            E   Y +  +G + V +  T G++  K A   V +  +  ++   R  +           
Sbjct: 983  EAHNYTKVLFGEDYVYRAGTIGTVADKTAYGFV-KGYERDHNLHFRGAE----------- 1030

Query: 489  LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMY 546
                                  +  +++   G+ R    H  GI+       +    P+ 
Sbjct: 1031 ----------------------IDRLAKGATGVKRTTGQHPGGIIVIPDYMEVYDFTPIQ 1068

Query: 547  RDV---RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
                   S+   T F+   I    ++K D LG    T+++   D          +     
Sbjct: 1069 FPADDIHSEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IDPKTIPTDDP 1125

Query: 604  DDHETYH-----------LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
            +  + +            + +  GTLGI +  +  +R  LE   P    +++ +  L   
Sbjct: 1126 EVMKIFEGTDVLGVTQEAIYSKTGTLGIPEFGTRFVRGMLEQTHPSTFAELLQISGLSHG 1185

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                         N +E I      +  ++     +++Y         + +G     A  
Sbjct: 1186 -------TDVWLGNAEELIRRGEANLANVIGCRDDIMVYL--------IHAGLDDGLAFK 1230

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +  ++ K      D     +     K  + +    +  ++      Y F K+HAAAY ++
Sbjct: 1231 IMESVRKGKGIPDD-----WQEEMRKQNVPEWYIDSCLKI-----KYMFPKAHAAAYVLM 1280

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---------------------------- 804
            + + A+ K ++P+ +  A  ++   + + +                              
Sbjct: 1281 ALRVAYFKVYFPILYYCAYFSVRAADFDLVAMSKGKQAVKDLMKEINDKGMDASTKEKNL 1340

Query: 805  -----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
                  C +  +         +     + F +  + +     A+  +G + A+ I+EA  
Sbjct: 1341 LTVLELCNEMLERGYNFGMIDLYKSDAENFVIDGDTLIAPFRAVPSLGLSVAKQIVEARK 1400

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLE 883
            D PF S ED  +R    K+++ ++E
Sbjct: 1401 DGPFLSKEDLANR---GKVSKTLIE 1422



 Score = 99.1 bits (245), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 38/90 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS+ S ++    + + + + A     AIAITD     S  +  Q A  AGI+ I 
Sbjct: 339 VELHVHSNMSQMDATNKVGDFVAQAAKWGHKAIAITDHGGAQSFPDAHQAAKKAGIKMIY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N   TP      +V 
Sbjct: 399 GVEANIVDDGVQVAYNPKPTPLADATYVVF 428


>gi|291558576|emb|CBL37376.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing
            bacterium SSC/2]
          Length = 1470

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 145/920 (15%), Positives = 283/920 (30%), Gaps = 182/920 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            +EF        I        D+D  +     N        +   ++LV    G   L  L
Sbjct: 600  VEFISMLKEKDIT-------DLDQVNEFANDNVDLIKKGRMYHGIILVKNNTGRVNLNRL 652

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  +L +   +  R+  S + +   +GLI+ +   +G + +A     S      +++F 
Sbjct: 653  VSESHL-NYFNRRPRMPKSLINKY-RDGLIIGSACEAGELYQALLDERSDETIANIVSFY 710

Query: 176  KLFGDRLYVNLQRHRGYD-----------------RYRESQVVQLAYTHELPLVATNNSL 218
                   Y+ +Q     +                 +    ++V L      P+VAT +  
Sbjct: 711  D------YLEIQPVGNNEFMIGSERVENVNSIEDIQKFNQKIVDLGEQFHKPVVATCDVH 764

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            FL+ +D     +L+A        +    +                +    +A E  +   
Sbjct: 765  FLNPDDAIYRSILLAG----KGFKDADQQAPLYFRTTQEMLDEFAYLGSEKAKEVVITNT 820

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
             + + +++  +PI P        D  K     LR                      +   
Sbjct: 821  NKINDMIENISPIHPDKCPPVIPDSDKT----LREICYNRAHEIYGDDL------PERVT 870

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             RL+ ELN I    ++  ++I    +  +  +   VG  RGS   S  A    IT+++PL
Sbjct: 871  SRLEKELNSIIGNGYAVMYIIAQKLVWDSNDHGYLVG-SRGSVGSSFAATMSGITEVNPL 929

Query: 399  RFS-----------------------------------------------LLFERFLNPD 411
                                                              + FE FL   
Sbjct: 930  PAHYICPECHFVDFDSEQVQKYAKMGMSGFDMPDAYCPKCGAKMTKEGQDIPFETFLGFK 989

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
                PD D++F  + + +   YV+  +G  +  +  T G+L  K A   V +        
Sbjct: 990  GNKEPDIDLNFSGEYQGKAHAYVEVIFGKGKAFRAGTIGTLAEKTAYGYVLK-------- 1041

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                      +         I                     ++    G+ R    H  G
Sbjct: 1042 -------YLEERGISKRRCEIER-------------------LALGCTGVKRTTGQHPGG 1075

Query: 532  IVIGDRP--LSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            I++      +     +           +T           L+K D LG    +++++   
Sbjct: 1076 IIVVPHDKEIYDFTAVQHPANDMNTPIITTHFEYHSIDQNLLKLDILGHDDPSMIRRM-- 1133

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
               +    +D   IP DD     L     TLGI   +  G      G+     + +I ++
Sbjct: 1134 ---EDITGIDAQTIPMDDKGVMGLFHGTETLGITPEDIDGTPLGSLGVPEFGTDFVIQML 1190

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
                P    ++V  +   +G +  +     +           I     + +  +  G   
Sbjct: 1191 QDTHPQSFSDLVRISGLSHGTDVWLGNAQTLIENGDAVISTAICCRDDIMVYLINQGLEQ 1250

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              +  +   + K      +++         ++       +   + +     Y F K+HAA
Sbjct: 1251 EASFKIMEGVRKGKGLTDEQE------QMMRDHNVPDWYIWSCKQI----KYMFPKAHAA 1300

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------- 804
            AY +++++ AW K ++P+ + AA  ++                                 
Sbjct: 1301 AYVMMAWRIAWYKVYHPLAYYAAYFSIRAKAFSYEDMCLGKERLDEKMSIIKNTPKHEVK 1360

Query: 805  -----------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARH 852
                          +      +  P  +      DF+V D +I  +L +I G+G   A+ 
Sbjct: 1361 NADLDLLREMKIADEMYARGYEFWPLDIYKAKAKDFQVIDGKIMPALTSIDGMGEKAAQQ 1420

Query: 853  IMEASADKPFDSLEDFCSRV 872
            + EA+  +PF SLE+F +R 
Sbjct: 1421 VEEAAKGEPFTSLENFRNRT 1440



 Score = 70.6 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 9/99 (9%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL---EFSQK 61
           +EK    V L +H+  S  +  + + +I+++      PA+AITD   L          + 
Sbjct: 349 MEKR---VELHLHTVMSDNDSVVQIKDIVNRAYEWGHPAVAITDHGVLQGFPIARHAYED 405

Query: 62  AC-AAG--IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
                    + I G +          + +          
Sbjct: 406 LRLKEDDPFKIIYGVEGYFVDDLGDLIIDSKGQSLMDSY 444


>gi|325681442|ref|ZP_08160968.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus
            albus 8]
 gi|324106932|gb|EGC01222.1| DNA polymerase III, alpha subunit, Gram-positive type [Ruminococcus
            albus 8]
          Length = 1498

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 160/947 (16%), Positives = 286/947 (30%), Gaps = 205/947 (21%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            + +DM + L       T    V   ++LV    G + L +L+S   L    K+  RI  S
Sbjct: 619  ITVDMINGLLGETDRVTETKDVYHQIILVRNNIGLKNLYKLISYSNLK-YFKRRPRIPKS 677

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNS-SQVAEKRLLTFKKLFGDRLYVNLQRHR--- 190
             L ++  EGLI+ +    G + +A+         ++    +        Y+ +Q      
Sbjct: 678  ELTKL-REGLILGSACERGEVIQAYLEGKSYDEIKQIASFYD-------YLEIQPDGNNM 729

Query: 191  --------GYDRYR--------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
                     YDR R           +V+L     +P+ AT +  FL+ ED +   ++ A 
Sbjct: 730  FMLTAEKPPYDRIRTEEDVKDINRFIVRLGNDLGIPVCATGDVHFLNREDAKFRAIIQA- 788

Query: 235  AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
            +          P                      E +            I          
Sbjct: 789  SMGFTDCDNQAPLYLKSTNQMLDELAYLGKEKAYEVVVT--NTNNVADMIDPDLKAFPVG 846

Query: 295  FIEKECDDIQKEEENELRNKAVA--------GLEVRLAQGAIAKGYHAQDYR----QRLD 342
                  +    E +     KA           +EV   +      Y  +       +RL 
Sbjct: 847  TYTPFIEGAVYELQIICWRKACELYGDCDPMSIEVPEGEDVDVSAYFEEHVHPLVFKRLK 906

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--- 399
             EL+ I +  FS  ++I    + ++ +    VG  RGS   S  A    I++++PL    
Sbjct: 907  RELDSIIKHGFSVLYMISQKLVAYSNQCGYQVG-SRGSVGSSFVASMSGISEVNPLEPHY 965

Query: 400  --------------------------------------FSLLFERFLNPDRMSMPDFDID 421
                                                    + FE FL  D    PD D++
Sbjct: 966  ICRKCHYSEFFENGEYGSGFDLPPKDCPNCGIPMHRDGHKIPFETFLGFDGDKAPDIDLN 1025

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  D + +V +Y +  +G + V +  T G +  K A   V + L                
Sbjct: 1026 FSGDCQSKVHKYTEELFGEDHVFKAGTIGKVADKTAYGYVKKYLD--------------- 1070

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPL 539
            +                            +  +      + R  S H  G+V   GD  +
Sbjct: 1071 ERGKTA-------------------CPAEIQRLVNGCVDVKRTTSQHPGGMVVIPGDYEV 1111

Query: 540  SQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
                P+        SD+  T F+   +    ++K D LG    T+ +       +    +
Sbjct: 1112 YDFTPVQHPADKADSDMVTTHFDFHSLHDT-ILKLDELGHDVPTMYK-----YLEDFTHM 1165

Query: 597  DLSLIPFDDHETYHLLTTKG--------------TLGIFQLESSGMRQALEGMQPDCIED 642
            D++  P  D   Y L T+                TLGI ++ +  +R  L   +P    D
Sbjct: 1166 DINECPMSDPAVYSLFTSPEALGVKPEDIRCETGTLGIPEMGTPFVRGMLLESKPKNFSD 1225

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            ++ +  L          V+                +          +I     + +  L 
Sbjct: 1226 LLQISGLSH-----GTDVWLGNAQ----------ELIKNGTCDISNVIGTRDSIMVYLLE 1270

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
                   A  +     K    +     E        + + +    +  ++      Y F 
Sbjct: 1271 HHLEPKLAFKIMEITRKGKAPK--LLTEEMKQDMRAHDVPEWYIDSCLKI-----KYMFP 1323

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------------------- 800
            K+HAAAY   + +  W K H P+ F A   T+  ++ +                      
Sbjct: 1324 KAHAAAYVTAAIRLCWFKVHEPLAFYATYFTVRGEDFDAETTLKGIYMVRDKIDKLSNMS 1383

Query: 801  ------------KIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGT 847
                         +     +      + +P  +N      +++ D +I     AI GVG 
Sbjct: 1384 KEERSGKDSGVLDMLMLTNEMMSRGYEFLPIDINKSHAFIYQIEDGKIRLPFCAINGVGV 1443

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              A  I E +    F S+E+F        + + V+E+L   GA    
Sbjct: 1444 NAAIAIYEKAQKNDFISIEEFQ---SDSGVTKAVVEALENIGAFGDL 1487



 Score = 87.9 bits (216), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA---CAAG-- 66
           V L  H++ S+++   +   ++ K A     A+AITD   +    E   K      +G  
Sbjct: 357 VELHCHTNMSMMDALAAPEKLVAKAAGWGHRALAITDHGVVQGFPEAGNKCADIRKSGQE 416

Query: 67  IQPIIGCQLD 76
            + I GC+  
Sbjct: 417 FKIIYGCEAY 426


>gi|257867714|ref|ZP_05647367.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30]
 gi|257874041|ref|ZP_05653694.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10]
 gi|257801797|gb|EEV30700.1| DNA polymerase III PolC [Enterococcus casseliflavus EC30]
 gi|257808205|gb|EEV37027.1| DNA polymerase III PolC [Enterococcus casseliflavus EC10]
          Length = 1449

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 143/924 (15%), Positives = 289/924 (31%), Gaps = 177/924 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A           ++ +  + N  +  +            +L  T  G + L +L+S
Sbjct: 582  FVKEAMEKH-------EMLLHEELNRHVGGENSYKAARPFHATILARTQAGLKNLFKLIS 634

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
               +     +  RI  S L ++  EGL++ T    G +  A        A +    +   
Sbjct: 635  MSNVKYFHDKVPRIPRSELVKL-REGLLVGTACDKGEVFVAMMQKGVDAARELAKFYDYI 693

Query: 176  KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y     + L +           +V++       +VAT N+ +L+EED     V
Sbjct: 694  EVMPKAVYAHLLEMELVKSEKDLEDIIRNLVKMGEELGKIVVATGNAHYLNEEDAIYRKV 753

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            L+        +  +R  +   H+      + +     PEA +  V         L     
Sbjct: 754  LINSMGG--ANPLNRHSLPDVHFRTTDEMLTAFQFLGPEAAKEIVVTNPNKIADLCEK-- 809

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             +    +          E E+ + +    +              +   +RL  EL+ I  
Sbjct: 810  -VIPVKDDLYTPKIPGSEQEITDLSYNRAKELYGDPL------PEIVEKRLKKELDSIIG 862

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 863  NGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPDCQYS 921

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  + + E
Sbjct: 922  EFYEDGSYGSGYDMPEKKCPKCGTRLNKDGHDIPFETFLGFHGDKVPDIDLNFSGEYQPE 981

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  K A   V                            
Sbjct: 982  AHNYTKVLFGEEYVYRAGTIGTVADKTAFGFV---------------------------- 1013

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                    F            +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1014 ------KGFERDHNLHYRAAEVDRLAKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1067

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1068 PADDQNAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IDPKTIPTDDPE 1124

Query: 605  DHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +            + +  GTLGI +  +  +R  L+   P    +++ +  L    
Sbjct: 1125 VMRIFGGTDVLGVTEEQIYSKTGTLGIPEFGTRFVRGMLDQTHPSTFAELLQISGLSHG- 1183

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1184 ------TDVWLGNAEELIRRGDASLAEVIGCRDDIMVYL--------IHAGLDDGMAFKI 1229

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++          A +        ++    +     Y F K+HAAAY +++
Sbjct: 1230 METVRKGQWNKIPDDLRDTYLQAMRENNVPEWYIDSCSKI----KYMFPKAHAAAYVLMA 1285

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K ++P+ +  A  ++  D+ + I                               
Sbjct: 1286 LRVAYFKVYFPILYYCAYFSVRADDFDLIAMSKGKDAVKERMQEITDKGLDASTKEKNLL 1345

Query: 805  ----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                   +  +   +     +     + F +   ++     A+  +G   A+ I+EA  D
Sbjct: 1346 TVLELANEMLERGYEFGMIDLYKSDAENFVIDGKKLIAPFRAVPSLGLNVAKQIVEARKD 1405

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLE 883
             PF S ED  +R    K+++ ++E
Sbjct: 1406 GPFLSKEDLANR---GKVSKTLIE 1426



 Score = 79.1 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++   ++ + + +       AIAITD +      +       AG++ + 
Sbjct: 337 VELHLHSNMSTMDATNNVADFVAQAGKWGHKAIAITDHSGAQGFPDAHHAGEKAGVKILY 396

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N    P      IV 
Sbjct: 397 GVEANIVDDGVAVAYNPQPVPLTDATYIVF 426


>gi|167766537|ref|ZP_02438590.1| hypothetical protein CLOSS21_01043 [Clostridium sp. SS2/1]
 gi|167711660|gb|EDS22239.1| hypothetical protein CLOSS21_01043 [Clostridium sp. SS2/1]
          Length = 1473

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 145/920 (15%), Positives = 283/920 (30%), Gaps = 182/920 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            +EF        I        D+D  +     N        +   ++LV    G   L  L
Sbjct: 603  VEFISMLKEKDIT-------DLDQVNEFANDNVDLIKKGRMYHGIILVKNNTGRVNLNRL 655

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  +L +   +  R+  S + +   +GLI+ +   +G + +A     S      +++F 
Sbjct: 656  VSESHL-NYFNRRPRMPKSLINKY-RDGLIIGSACEAGELYQALLDERSDETIANIVSFY 713

Query: 176  KLFGDRLYVNLQRHRGYD-----------------RYRESQVVQLAYTHELPLVATNNSL 218
                   Y+ +Q     +                 +    ++V L      P+VAT +  
Sbjct: 714  D------YLEIQPVGNNEFMIGSERVENVNSIEDIQKFNQKIVDLGEQFHKPVVATCDVH 767

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            FL+ +D     +L+A        +    +                +    +A E  +   
Sbjct: 768  FLNPDDAIYRSILLAG----KGFKDADQQAPLYFRTTQEMLDEFAYLGSEKAKEVVITNT 823

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
             + + +++  +PI P        D  K     LR                      +   
Sbjct: 824  NKINDMIENISPIHPDKCPPVIPDSDKT----LREICYNRAHEIYGDDL------PERVT 873

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             RL+ ELN I    ++  ++I    +  +  +   VG  RGS   S  A    IT+++PL
Sbjct: 874  SRLEKELNSIIGNGYAVMYIIAQKLVWDSNDHGYLVG-SRGSVGSSFAATMSGITEVNPL 932

Query: 399  RFS-----------------------------------------------LLFERFLNPD 411
                                                              + FE FL   
Sbjct: 933  PAHYICPECHFVDFDSEQVQKYAKMGMSGFDMPDAYCPKCGAKMTKEGQDIPFETFLGFK 992

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
                PD D++F  + + +   YV+  +G  +  +  T G+L  K A   V +        
Sbjct: 993  GNKEPDIDLNFSGEYQGKAHAYVEVIFGKGKAFRAGTIGTLAEKTAYGYVLK-------- 1044

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                      +         I                     ++    G+ R    H  G
Sbjct: 1045 -------YLEERGISKRRCEIER-------------------LALGCTGVKRTTGQHPGG 1078

Query: 532  IVIGDRP--LSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            I++      +     +           +T           L+K D LG    +++++   
Sbjct: 1079 IIVVPHDKEIYDFTAVQHPANDMNTPIITTHFEYHSIDQNLLKLDILGHDDPSMIRRM-- 1136

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
               +    +D   IP DD     L     TLGI   +  G      G+     + +I ++
Sbjct: 1137 ---EDITGIDAQTIPMDDKGVMGLFHGTETLGITPEDIDGTPLGSLGVPEFGTDFVIQML 1193

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
                P    ++V  +   +G +  +     +           I     + +  +  G   
Sbjct: 1194 QDTHPQSFSDLVRISGLSHGTDVWLGNAQTLIENGDAVISTAICCRDDIMVYLINQGLEQ 1253

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              +  +   + K      +++         ++       +   + +     Y F K+HAA
Sbjct: 1254 EASFKIMEGVRKGKGLTDEQE------QMMRDHNVPDWYIWSCKQI----KYMFPKAHAA 1303

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------- 804
            AY +++++ AW K ++P+ + AA  ++                                 
Sbjct: 1304 AYVMMAWRIAWYKVYHPLAYYAAYFSIRAKAFSYEDMCLGKERLDEKMSIIKNTPKHEVK 1363

Query: 805  -----------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARH 852
                          +      +  P  +      DF+V D +I  +L +I G+G   A+ 
Sbjct: 1364 NADLDLLREMKIADEMYARGYEFWPLDIYKAKAKDFQVIDGKIMPALTSIDGMGEKAAQQ 1423

Query: 853  IMEASADKPFDSLEDFCSRV 872
            + EA+  +PF SLE+F +R 
Sbjct: 1424 VEEAAKGEPFTSLENFRNRT 1443



 Score = 70.6 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 9/99 (9%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL---EFSQK 61
           +EK    V L +H+  S  +  + + +I+++      PA+AITD   L          + 
Sbjct: 352 MEKR---VELHLHTVMSDNDSVVQIKDIVNRAYEWGHPAVAITDHGVLQGFPIARHAYED 408

Query: 62  AC-AAG--IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
                    + I G +          + +          
Sbjct: 409 LRLKEDDPFKIIYGVEGYFVDDLGDLIIDSKGQSLMDSY 447


>gi|153954051|ref|YP_001394816.1| DNA polymerase III PolC [Clostridium kluyveri DSM 555]
 gi|219854664|ref|YP_002471786.1| hypothetical protein CKR_1321 [Clostridium kluyveri NBRC 12016]
 gi|146346932|gb|EDK33468.1| PolC [Clostridium kluyveri DSM 555]
 gi|219568388|dbj|BAH06372.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1439

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 145/900 (16%), Positives = 290/900 (32%), Gaps = 187/900 (20%)

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
              +++LV    G + L ++VS+  L +   +  R+  S + +   EGLI+     +G + 
Sbjct: 615  YHLIILVKNQIGLKNLYKMVSKSNL-NYFFKKPRMPKSIIIK-HREGLIIGGACEAGQVY 672

Query: 157  RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ---------RHR-----GYDRYRESQVVQ 202
            R      S    K +L F        Y+ +Q         R+         +    ++  
Sbjct: 673  REVLGGKSDSELKDILDFYD------YLEIQPVENNLFMVRNGLVKDIEQLKDINRRICD 726

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
            L   + +P++AT +  F+  +D     ++MA             +               
Sbjct: 727  LGVINNIPVIATGDVHFMDPKDEIFRRIIMAGQ----GYSDADNQPPLYFRTTEEMLFEF 782

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
             +    +A E  +E   + + +++   PI       + +      E E++N  +  +   
Sbjct: 783  EYLGEKKAREVVIENTNKIADMIEEVKPIPDETFPPKIEG----AEEEIKNMTLKKVHSI 838

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                        +  ++RLD ELN I    ++  +LI    ++ +  +   VG  RGS  
Sbjct: 839  YGDNL------PEIVQERLDKELNSIINNGYAVLYLIAQKLVEKSYNDGYLVG-SRGSVG 891

Query: 383  GSVTAYALTITDIDPLR-----------------------------------------FS 401
             S  A    IT+++ L                                            
Sbjct: 892  SSFVATMSNITEVNGLPPHYVCPNCKYSEFFTDGSIGSGADLPDKSCPDCGEKLMKDGHD 951

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            + FE FL       PD D++F  + +  V +Y +  +G + V +  T G++  K A   V
Sbjct: 952  IPFETFLGFAGDKEPDIDLNFSGEYQPVVHKYTEVLFGKDHVFRAGTIGTIAEKTAYGYV 1011

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
             + +                                    +        +  +++   G+
Sbjct: 1012 KKYIA----------------------------------EKNMVLPQAEIERLTKGCTGI 1037

Query: 522  YRHASTHAAGI--VIGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLK 577
             R    H  G+  V  D  +    P+      +    +T           L+K D LG  
Sbjct: 1038 KRTTGQHPGGVMVVPDDNDIHNFTPVQHPADDNSTEIITTHFDYHSISGRLLKLDILGHD 1097

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQLESSGM 628
              T+L+   D        + L         T           +  + GT G+ +  +  +
Sbjct: 1098 DPTVLRMLQDLTGLDPKTIPLGEPKVMSLFTSPEALGVSEKEIDCSVGTYGLPEFGTKFV 1157

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            RQ L    P    D++ +  L          V+ N      K       +   +     +
Sbjct: 1158 RQMLMDTHPKTFADLVRISGLSH-----GTDVWLNNAQYYIKEGYT--TLQDCIACRDDI 1210

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            +IY  Q         G     +  +   + K    + + +              +    N
Sbjct: 1211 MIYLIQ--------KGLPPKTSFTIMEMVRKGKGLKEEHEAIMR----------EHTVPN 1252

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------- 800
             +    K   Y F K HA AY +++ + A+ K +YP  + AA  T+  +  +        
Sbjct: 1253 WYIESCKKIKYMFPKGHAVAYVMMAVRIAYFKVYYPKAYYAAYFTVRANEFDADIVVQGE 1312

Query: 801  -------------------------KIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNR 834
                                      I + C +  +  I+ +   +     + F + ++ 
Sbjct: 1313 GAIKKKMDELYSQGNNLTQKDKGLLTILELCYEMNKRGIKFLKVDLYKSHAIKFLIEESG 1372

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I   + ++ G+G   A++I++A  +  F S ED   R    K+++ V+++L   G L   
Sbjct: 1373 IRVPMNSLAGLGENAAKNIVKAREEGEFISKEDLRIRA---KVSKTVIDTLNNHGCLGNL 1429



 Score = 98.7 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S ++++ + A     AIAITD   + +  E  + A    I+ I 
Sbjct: 341 VELHLHTQMSAMDAVSSASDLIKRAALWGHKAIAITDHGVVQAFPEAMEAAKKNNIKVIY 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +         N  +       
Sbjct: 401 GIEAYMVDDGIPIAINGDEKTLDDTF 426


>gi|254302688|ref|ZP_04970046.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
            nucleatum subsp. polymorphum ATCC 10953]
 gi|148322880|gb|EDK88130.1| DNA-directed DNA polymerase III alpha subunit [Fusobacterium
            nucleatum subsp. polymorphum ATCC 10953]
          Length = 1454

 Score =  211 bits (538), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 159/946 (16%), Positives = 326/946 (34%), Gaps = 177/946 (18%)

Query: 51   NLFSALEFSQKACAAG---IQPI-IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA 106
            N+F  + F  K    G   I+ I +G ++++  Q                  I++LV T 
Sbjct: 581  NMF--IIFLDKYKEKGLEYIKDINVGFEVNVKKQSLKN--------------IMVLVKTQ 624

Query: 107  EGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS-----GPIDRAFFF 161
            +G + + +LVS  ++   G +  RI  S L E   EGLI+ +  ++     G +   +  
Sbjct: 625  DGLKNMYKLVSESHIKYFGNKKARIPKSVLVE-NREGLIIGSSLTAHFMNTGELADLYLR 683

Query: 162  NSSQVAEKRLLTF--KKLFGDRLYVNLQ------RHRGYDR--YRESQVVQLAYTHELPL 211
            +  +  E+    +   +L     Y  L           Y+           L     + +
Sbjct: 684  HDLEKLEEAAKFYDYIELLPKSTYNELIEKDGTGALGSYEEVEKMNKYFYDLGKRLGILV 743

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
             A++N  +L E +     +L+  + +   S++            +       +    EA 
Sbjct: 744  TASSNIHYLDENEDIIRSILLYGSGTVYNSRQYSINNGFYFRTTDEMLQEFSYLGEDEAK 803

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
            E  ++   + + +++     +    E       +  E  +R                   
Sbjct: 804  EVIIKNTNKIADMIE---SGIRPIPEGFYPPKMENAEEIVRTMTYEKAHRIYGDPL---- 856

Query: 332  YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
                    RL+ ELN I    FS  +L     ++ +  N   VG  RGS   S+ A+ + 
Sbjct: 857  --PDIVSARLERELNAIINNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGSSLVAFMMG 913

Query: 392  ITDIDPLR-----------------------------------------FSLLFERFLNP 410
            IT+++ L                                          +S+ FE F+  
Sbjct: 914  ITEVNALYPHYICDNPECKHSEFIEREGVGIDLPDKICPKCGKKLRKDGYSIPFEVFMGF 973

Query: 411  DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYS 470
                +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V +       
Sbjct: 974  KGDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAEAYVRK------- 1026

Query: 471  QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
                                   +D+     R     + RL + ++K          H  
Sbjct: 1027 ---------------------YFEDNNLNAVRAEIIRLGRLCQGAKKTT------GQHPG 1059

Query: 531  GIVIGDR--PLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            G+VI  +   + +  P+ R    +      T ++   +++  L+K D LG    T ++  
Sbjct: 1060 GMVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDE-QLVKLDILGHDDPTTIK-- 1116

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDI 643
               L Q    +++  IP  D ET  + ++  +LG+   Q+ +      +       +  +
Sbjct: 1117 ---LLQEYTNMEIKDIPLADKETLKIFSSTESLGVTPEQIGTEIGTYGIPEFGTGFVRQM 1173

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
               +   RP     +V  +   +G    ++         + T   II     +    +  
Sbjct: 1174 ---LIDTRPTTFAELVRISGLSHGTNVWLNNAQEFVRNGQATLSQIITVRDDIMNYLIDQ 1230

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G   S+A  +   + K   ++  +  E+F +   +  +      +   +     +Y F K
Sbjct: 1231 GLDNSDAFKIMEFVRKGKPKKEPENWEKFSTMMKEKNVPDWYIESCRRI-----EYMFPK 1285

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK---------------------- 801
             HA AY +++ + A+ K H P+ F AA ++ + ++ +                       
Sbjct: 1286 GHAVAYVMMAMRIAYFKVHQPLAFYAAFLSRKAEDFDMEVMSRGILAKQKLEELSKEPKL 1345

Query: 802  ---------IKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTAR 851
                     I +   +     ++++P  +       F + + +I   L  I G+G     
Sbjct: 1346 DPKKKNEQAICEIVIEMEARGLELLPVDIYLSAGRKFTIENEKIRIPLIGINGLGGAVID 1405

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             I++   +  F S+ED   R    K+++ V++ L   GA+     +
Sbjct: 1406 AIVKEREEGKFISIEDLKRRT---KMSQPVVDKLKNIGAISSLSET 1448



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
           V L  H+  S + G   + +++ +       AIAITD + + S     + A         
Sbjct: 336 VELHAHTKMSEMVGVTDVEDLIKRAKEYGHKAIAITDYSVVHSYPAAFKTAKKFSTDEEK 395

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           ++ I GC++ +   +   +TN           +V 
Sbjct: 396 MKAIFGCEMYMIDDEAPMVTNPKDKKIDEEEFVVF 430


>gi|153810942|ref|ZP_01963610.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174]
 gi|149832830|gb|EDM87913.1| hypothetical protein RUMOBE_01332 [Ruminococcus obeum ATCC 29174]
          Length = 1439

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 145/942 (15%), Positives = 294/942 (31%), Gaps = 190/942 (20%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            + F +      I        D+D  +     +            ++L     G   L +L
Sbjct: 569  VRFVEMLKERDI-------FDMDTLNQQGNVSVNTIKKLPTYHAIILARNETGRVNLYKL 621

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS+ +L    ++  R+  S   E   EGL++ +   +G + +A   N+ +    RL+ F 
Sbjct: 622  VSQSHLK-YYRRRPRVPKSLFLE-HREGLLIGSACEAGELYQALLRNAPEPEIARLVNFY 679

Query: 176  KLFGDRLYVNLQRHRGY-----DR------------YRESQVVQLAYTHELPLVATNNSL 218
                   Y+ +Q          D                 ++V+L    + P+VAT +  
Sbjct: 680  D------YLEIQPLGNNAFMIADEKNDRVKSNEDLIELNKKIVKLGDQFKKPVVATCDVH 733

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            F+  +D     ++MA          +      +           +  +         E  
Sbjct: 734  FMDPQDEIYRRIIMA---------GNGFSDADNQAPLYLRTTEEMLEEFSYLGSEKAEEV 784

Query: 279  RRCS-FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
               +   +      +      +   + +  + +L++           +         +  
Sbjct: 785  VITNTNKIADMIEKISPIHPDKFPPVIENSDQDLKDICFNRAHEMYGENL------PKIV 838

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
              RL+ EL+ I    ++  ++I    +  + ++   VG  RGS   S+ A    IT+++P
Sbjct: 839  EDRLNKELHSIISNGYAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSLAATMSGITEVNP 897

Query: 398  LR---------------------------------------------FSLLFERFLNPDR 412
            L                                              F + FE FL    
Sbjct: 898  LPPHYLCPECKYSDFDSPEVKKFGGMAGCDMPDKVCPKCGAKMSKEGFDIPFETFLGFKG 957

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
               PD D++F  + +    RY +  +G  +  +  T G+L  K A   V    +      
Sbjct: 958  DKEPDIDLNFSGEYQANAHRYTEVIFGKGQTFKAGTIGTLAEKTAFGYVKNYYE------ 1011

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
                                         R        +  I Q   G+ R    H  GI
Sbjct: 1012 ----------------------------ERGQHKRYCEINRIVQGCTGIRRTTGQHPGGI 1043

Query: 533  V--IGDRPLSQLVPMYRDVRSDL--PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            +       + +  P+      +    +T           L+K D LG    T+++   D 
Sbjct: 1044 IVLPVGVEIEKFTPVQHPANDENSDIITTHFDYHSIDGNLLKLDILGHDDPTMIRMLEDL 1103

Query: 589  LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
                        +P D  E   L  +   LGI   +  G +    G+     +  + ++ 
Sbjct: 1104 TGLSA-----RDVPLDSKEVMSLFASTDALGIKPEDIGGCKLGCLGVPEFGTDFAMQMLI 1158

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
              +P    ++V      +G +  +     +    K T    I     + I  +  G   S
Sbjct: 1159 DTKPKYFSDLVRIAGLSHGTDVWLGNAQTLIEEGKATISTAICTRDDIMIYLISMGVESS 1218

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             A  +  A+ K      +     + +   ++ + +    +  ++      Y F K+HAAA
Sbjct: 1219 LAFTIMEAVRKGKGLREE-----WEATMREHNVPEWYIWSCKKI-----KYMFPKAHAAA 1268

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK--------------------------- 801
            Y +++++ AW K   P+ + AA  ++                                  
Sbjct: 1269 YVMMAWRIAWFKVFKPLAYYAAFFSIRATAFSYETMCMGRDRLDFYLAELRKKGDAASKK 1328

Query: 802  ------IKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIM 854
                    +  Q+     ++ MP  +     + F++ D ++  +L  I G+G   A  ++
Sbjct: 1329 EQDTIKDMRIVQEMYARGLEFMPIDLYRAKANRFQIIDGKLMPALNCIDGMGDKAAEAVV 1388

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            +A+    F S +DF  R    K+++ V+        +D  G 
Sbjct: 1389 DAAKQGKFLSKDDFRDRT---KVSKTVI------DLMDDLGI 1421



 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 11/106 (10%)

Query: 2   TQYLEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           +  ++ SP   V L  H+  S ++G  +  +++ +       AIAITD   + +  E   
Sbjct: 309 STRMDTSPQKRVELHCHTKMSDMDGVTTAKDLVKRAYEWGHKAIAITDHGVVQAFPEA-N 367

Query: 61  KA---------CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
                        +  + + G +  +       +TN    P     
Sbjct: 368 HCFDAWGGCVPKDSDFKVLYGMEAYLVDDMKGIVTNSQGQPIDGKF 413


>gi|317500099|ref|ZP_07958334.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316898584|gb|EFV20620.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 1520

 Score =  211 bits (537), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 167/922 (18%), Positives = 314/922 (34%), Gaps = 168/922 (18%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
             +   +     N           I++L     G   L +L+S+ ++     +  RI  S 
Sbjct: 652  TLKEVNRYGDRNVNAIRKMPTHHIIILAKNDIGRYNLYQLISQSHMT-YYARRPRIPKSL 710

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-----GDR-LYVNLQR- 188
            L E   EGL++ +   +G + +A     S     RL  F   +     G+    +  +R 
Sbjct: 711  LNE-HREGLLIGSACEAGELYQAVHEKRSAQQIARLAEFYDYYEIQPVGNNQFMIESERI 769

Query: 189  ---HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
               +   D +    ++V+L      P+VAT +  FL+ +D     ++MA          D
Sbjct: 770  ADVNSIEDLQNINREIVELGEKFGKPVVATCDVHFLNPDDEVYRRIIMA---GKGFDDAD 826

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R    P  +L+   EM+  FS L  A     EI       +      +      +C  + 
Sbjct: 827  RQ---PPLFLRTTDEMLEEFSYLGAA--KAREIVIDNPVKIAGMIEKISPVNPNKCPPVI 881

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +  + ELR+           +         +    RL+ ELN I    ++  ++I    +
Sbjct: 882  ENSDQELRDICYRKAHEMYGEDL------PKQVSARLEKELNSIISNGYAVMYIIAQKLV 935

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------- 399
              +  +   VG  RGS   S  A    IT+++PL                          
Sbjct: 936  WKSNADGYLVG-SRGSVGSSFVATMAGITEVNPLSPHYYCSKCHYSDFESDEVRSFAGGC 994

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                F + FE FL       PD D++F  D + +  +Y +  +G
Sbjct: 995  GYDMPDKKCPVCGEQLVKAGFDIPFETFLGFKGDKEPDIDLNFSGDYQAKAHKYTEVLFG 1054

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
                 +  T G+L  K A   V                            +   ++   R
Sbjct: 1055 EGHTFKAGTIGTLADKTAYGFV----------------------------RNYYEEHEQR 1086

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
            +          +  +++   G+ R    H  GIV       +++  P+          + 
Sbjct: 1087 KR------KCEIERVTEGCTGIRRSTGQHPGGIVVLPHGHDINEFTPVQHPANDMECGIT 1140

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQ--------KSLDFLAQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++         +++           + IP DD 
Sbjct: 1141 TTHFDYHSI-DHNLLKLDILGHDDPTMIRTLEDYITSDAMENEYNADHPFIATEIPLDDK 1199

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +   L      LGI   +  G +    G+     + +I +V   +P  + +++  +   +
Sbjct: 1200 DVIELFHGTEVLGIKPEDIDGCKIGSLGIPEFGTDFVIQMVQDTKPQTLSDLIRISGLSH 1259

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G    +     +    K T    I     + I  +  G   + A  +  ++ K    + +
Sbjct: 1260 GTNVWLGNAQELVKSGKATISTAICTRDDIMIYLINKGVESALAFTIMESVRKGKGLKPE 1319

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
                     A K        +   + +     Y F K+HAAAY +++Y+ A+ K +YP+ 
Sbjct: 1320 ------WEEAMKAQDVPDWYIWSCKKI----SYMFPKAHAAAYVMMAYRIAYCKINYPLA 1369

Query: 787  FLAASM---------------------------------TLEMDNVEKIKKFCQDARQFN 813
            + AA                                   + +  +V K  K  Q+     
Sbjct: 1370 YYAAYFGIRADAFSYALMCQGKETLNYHIKQYKSKGDQLSKKEQDVLKDMKIVQEMYARG 1429

Query: 814  IQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
             + +P  +       F++ D ++  SLA+I+G+G   A  + EA+ D  + SL+DF  R 
Sbjct: 1430 FEFVPIDIYRAKAKMFQIVDGKLMPSLASIEGMGDKAAEAVEEAAKDGAYLSLDDFRQRT 1489

Query: 873  DSKKLNRRVLESLVFAGALDCF 894
               K+++ V++ +   G     
Sbjct: 1490 ---KVSKTVIDLMAELGLFGDL 1508



 Score = 72.5 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 4/90 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--SQKACAAG--I 67
           V L  H+  S ++G   + +I+ +      PAIAITD     +  +     +        
Sbjct: 394 VELHCHTKMSDMDGVSEVKDIVKRAHDWGHPAIAITDHGVAQAFPDANHYIETLDKDDPF 453

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           + + G +  +         N G        
Sbjct: 454 KVLYGVEGYVVDDLTEIAVNAGNQTLDDTY 483


>gi|153814386|ref|ZP_01967054.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756]
 gi|145848782|gb|EDK25700.1| hypothetical protein RUMTOR_00596 [Ruminococcus torques ATCC 27756]
          Length = 1459

 Score =  211 bits (537), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 167/922 (18%), Positives = 314/922 (34%), Gaps = 168/922 (18%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
             +   +     N           I++L     G   L +L+S+ ++     +  RI  S 
Sbjct: 591  TLKEVNRYGDRNVNAIRKMPTHHIIILAKNDIGRYNLYQLISQSHMT-YYARRPRIPKSL 649

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-----GDR-LYVNLQR- 188
            L E   EGL++ +   +G + +A     S     RL  F   +     G+    +  +R 
Sbjct: 650  LNE-HREGLLIGSACEAGELYQAVHEKRSAQQIARLAEFYDYYEIQPVGNNQFMIESERI 708

Query: 189  ---HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
               +   D +    ++V+L      P+VAT +  FL+ +D     ++MA          D
Sbjct: 709  ADVNSIEDLQNINREIVELGEKFGKPVVATCDVHFLNPDDEVYRRIIMA---GKGFDDAD 765

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R    P  +L+   EM+  FS L  A     EI       +      +      +C  + 
Sbjct: 766  RQ---PPLFLRTTDEMLEEFSYLGAA--KAREIVIDNPVKIAGMIEKISPVNPNKCPPVI 820

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +  + ELR+           +         +    RL+ ELN I    ++  ++I    +
Sbjct: 821  ENSDQELRDICYRKAHEMYGEDL------PKQVSARLEKELNSIISNGYAVMYIIAQKLV 874

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------- 399
              +  +   VG  RGS   S  A    IT+++PL                          
Sbjct: 875  WKSNADGYLVG-SRGSVGSSFVATMAGITEVNPLSPHYYCSKCHYSDFESDEVRSFAGGC 933

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                F + FE FL       PD D++F  D + +  +Y +  +G
Sbjct: 934  GYDMPDKKCPVCGEQLVKAGFDIPFETFLGFKGDKEPDIDLNFSGDYQAKAHKYTEVLFG 993

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
                 +  T G+L  K A   V                            +   ++   R
Sbjct: 994  EGHTFKAGTIGTLADKTAYGFV----------------------------RNYYEEHEQR 1025

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
            +          +  +++   G+ R    H  GIV       +++  P+          + 
Sbjct: 1026 KR------KCEIERVTEGCTGIRRSTGQHPGGIVVLPHGHDINEFTPVQHPANDMECGIT 1079

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQ--------KSLDFLAQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++         +++           + IP DD 
Sbjct: 1080 TTHFDYHSI-DHNLLKLDILGHDDPTMIRTLEDYITSDAMENEYNADHPFIATEIPLDDK 1138

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +   L      LGI   +  G +    G+     + +I +V   +P  + +++  +   +
Sbjct: 1139 DVIELFHGTEVLGIKPEDIDGCKIGSLGIPEFGTDFVIQMVQDTKPQTLSDLIRISGLSH 1198

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G    +     +    K T    I     + I  +  G   + A  +  ++ K    + +
Sbjct: 1199 GTNVWLGNAQELVKSGKATISTAICTRDDIMIYLINKGVESALAFTIMESVRKGKGLKPE 1258

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
                     A K        +   + +     Y F K+HAAAY +++Y+ A+ K +YP+ 
Sbjct: 1259 ------WEEAMKAQDVPDWYIWSCKKI----SYMFPKAHAAAYVMMAYRIAYCKINYPLA 1308

Query: 787  FLAASM---------------------------------TLEMDNVEKIKKFCQDARQFN 813
            + AA                                   + +  +V K  K  Q+     
Sbjct: 1309 YYAAYFGIRADAFSYALMCQGKETLNYHIKQYKSKGDQLSKKEQDVLKDMKIVQEMYARG 1368

Query: 814  IQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
             + +P  +       F++ D ++  SLA+I+G+G   A  + EA+ D  + SL+DF  R 
Sbjct: 1369 FEFVPIDIYRAKAKMFQIVDGKLMPSLASIEGMGDKAAEAVEEAAKDGAYLSLDDFRQRT 1428

Query: 873  DSKKLNRRVLESLVFAGALDCF 894
               K+++ V++ +   G     
Sbjct: 1429 ---KVSKTVIDLMAELGLFGDL 1447



 Score = 72.5 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 4/90 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--SQKACAAG--I 67
           V L  H+  S ++G   + +I+ +      PAIAITD     +  +     +        
Sbjct: 333 VELHCHTKMSDMDGVSEVKDIVKRAHDWGHPAIAITDHGVAQAFPDANHYIETLDKDDPF 392

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           + + G +  +         N G        
Sbjct: 393 KVLYGVEGYVVDDLTEIAVNAGNQTLDDTY 422


>gi|226313025|ref|YP_002772919.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
 gi|226095973|dbj|BAH44415.1| DNA polymerase III alpha subunit [Brevibacillus brevis NBRC 100599]
          Length = 1434

 Score =  211 bits (536), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 156/931 (16%), Positives = 293/931 (31%), Gaps = 201/931 (21%)

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             ++    + N K   +            +LV   EG + L +LVSR ++     +  RI 
Sbjct: 587  AEIKSLAELNEKSNEEADYKSGRPFHATILVQNKEGLKNLYKLVSRSHVET-FFRWPRIQ 645

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS-SQVAEKRLLTFKKLFGDRLYVNLQR--- 188
             S L +   EGL++ T    G + ++       +  ++    +        ++ +Q    
Sbjct: 646  RSQLSKY-REGLLIGTACKDGELMQSILRGKSPEELKEVAAFYD-------FIEVQPISH 697

Query: 189  ---HRGYDRY--------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
                   +             ++VQ+       +VAT +  FL+ +D    DV +     
Sbjct: 698  YSPLLRNEEIPSLETMKGYHEKIVQMGKELGKLVVATGDVHFLNPQDEIFRDVFL----L 753

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
            +        +     +  +       F     A E  V      + +++  +PI  +   
Sbjct: 754  SKGDPTAGNQPPLYFHTTDEMLEAFSFLGEEIAKEIVVTNTNAIADMIEDISPIPDKLYT 813

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               +      ++ELR        +             +    RL+ ELN I +  F   +
Sbjct: 814  PIIEG----ADDELRQMCYDKARLLYGDPL------PELVEHRLEKELNSIIKHGFGVIY 863

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            LI    +  +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 864  LISQRLVTKSLNDGYLVG-SRGSVGSSFVATMSEITEVNPLPPHYRCPNCKHSEFITDGS 922

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL      +PD D++F  D +    +Y Q 
Sbjct: 923  IASGFDLEDKACTQCGTMYAKDGQDIPFETFLGFKGDKVPDIDLNFSGDYQPRAHKYTQE 982

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G + V +  T G++  K A   V +                  +    +    I+   
Sbjct: 983  LFGADYVYRAGTIGTVAEKTAYGYVRKYAD---------------ERGMTLRNAEISR-- 1025

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRSD-- 552
                             I     G+ R    H  GI  V     +    P+      +  
Sbjct: 1026 -----------------IVNGCTGVKRTTGQHPGGIIVVPDYMEIEDFCPIQFPADDNES 1068

Query: 553  -LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
                T F+   I        + L L  L     ++  + Q    +D   IP DD +T  +
Sbjct: 1069 EWRTTHFDFHSIHD------NLLKLDILGHDDPTVIRMLQDLTGMDPKTIPLDDKKTMSI 1122

Query: 612  LTTKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
             ++                TLGI +  +  +RQ LE  +P    +++ +  L        
Sbjct: 1123 FSSTEALGVSPEQIGTNMGTLGIPEFGTKFVRQMLEDTKPTTFAELVQISGLSHG----- 1177

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
                    N ++ I +    +  ++     +++Y         +  G   S A  +  ++
Sbjct: 1178 --TDVWLNNAQDLIRNGTCKLPDVIGCRDDIMVYL--------IYKGLEPSRAFKIMESV 1227

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K      D Q          N + +    +   +      Y F K+HA AY +++ + A
Sbjct: 1228 RKGKGVPEDDQ-----EEMRNNNVPEWYIQSCQRI-----KYMFPKAHATAYVMMAVRIA 1277

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------------- 804
            + K H P+EF A   T+  D+ +                                     
Sbjct: 1278 YFKVHRPLEFYATYFTVRADDFDIPLMVKGSAAIKQKIEEIEGKGHDAQPKEKALLTVLE 1337

Query: 805  FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
               +  +   + +   +       F +  + +     A+ G+GT  A  I++A     F 
Sbjct: 1338 MALEMIERGFRFVNVDLYKSDATRFLIEGDSLIAPFNALPGLGTNAAISIVQAREQGEFL 1397

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            S ED  SR    ++++ +LE L   GAL   
Sbjct: 1398 SKEDLLSR---SRISKTILEFLDEQGALQGL 1425



 Score = 91.4 bits (225), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S L+   S+ +++   A     AIA+TD   + +  E    A    I+ I+
Sbjct: 331 VELHCHTPMSALDAVASVKSLISTAAKWGHKAIAVTDHGVVQAFPEAYSIAKKNNIKCIL 390

Query: 72  GCQLDIDMQD 81
           G +  +    
Sbjct: 391 GMEAYVVEDG 400


>gi|331087674|ref|ZP_08336601.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330410366|gb|EGG89799.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 1520

 Score =  211 bits (536), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 167/922 (18%), Positives = 314/922 (34%), Gaps = 168/922 (18%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
             +   +     N           I++L     G   L +L+S+ ++     +  RI  S 
Sbjct: 652  TLKEVNRYGDRNVNAIRKMPTHHIIILAKNDIGRYNLYQLISQSHMT-YYARRPRIPKSL 710

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-----GDR-LYVNLQR- 188
            L E   EGL++ +   +G + +A     S     RL  F   +     G+    +  +R 
Sbjct: 711  LNE-HREGLLIGSACEAGELHQAVHEKRSAQQIARLAEFYDYYEIQPVGNNQFMIESERI 769

Query: 189  ---HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
               +   D +    ++V+L      P+VAT +  FL+ +D     ++MA          D
Sbjct: 770  ADVNSIEDLQNINREIVELGEKFGKPVVATCDVHFLNPDDEVYRRIIMA---GKGFDDAD 826

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            R    P  +L+   EM+  FS L  A     EI       +      +      +C  + 
Sbjct: 827  RQ---PPLFLRTTDEMLEEFSYLGAA--KAREIVIDNPVKIAGMIEKISPVNPNKCPPVI 881

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +  + ELR+           +         +    RL+ ELN I    ++  ++I    +
Sbjct: 882  ENSDQELRDICYRKAHEMYGEDL------PKQVSARLEKELNSIISNGYAVMYIIAQKLV 935

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------- 399
              +  +   VG  RGS   S  A    IT+++PL                          
Sbjct: 936  WKSNADGYLVG-SRGSVGSSFVATMAGITEVNPLSPHYYCSKCHYSDFESDEVRSFAGGC 994

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                F + FE FL       PD D++F  D + +  +Y +  +G
Sbjct: 995  GYDMPDKKCPVCGEQLVKAGFDIPFETFLGFKGDKEPDIDLNFSGDYQAKAHKYTEVLFG 1054

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
                 +  T G+L  K A   V                            +   ++   R
Sbjct: 1055 EGHTFKAGTIGTLADKTAYGFV----------------------------RNYYEEHEQR 1086

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
            +          +  +++   G+ R    H  GIV       +++  P+          + 
Sbjct: 1087 KR------KCEIERVTEGCTGIRRSTGQHPGGIVVLPHGHDINEFTPVQHPANDMECGIT 1140

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQ--------KSLDFLAQRGVKVDLSLIPFDDH 606
             T F+   I    L+K D LG    T+++         +++           + IP DD 
Sbjct: 1141 TTHFDYHSI-DHNLLKLDILGHDDPTMIRTLEDYITSDAMENEYNADHPFIATEIPLDDK 1199

Query: 607  ETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
            +   L      LGI   +  G +    G+     + +I +V   +P  + +++  +   +
Sbjct: 1200 DVIELFHGTEVLGIKPEDIDGCKIGSLGIPEFGTDFVIQMVQDTKPQTLSDLIRISGLSH 1259

Query: 667  GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            G    +     +    K T    I     + I  +  G   + A  +  ++ K    + +
Sbjct: 1260 GTNVWLGNAQELVKSGKATISTAICTRDDIMIYLINKGVESALAFTIMESVRKGKGLKPE 1319

Query: 727  KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
                     A K        +   + +     Y F K+HAAAY +++Y+ A+ K +YP+ 
Sbjct: 1320 ------WEEAMKAQDVPDWYIWSCKKI----SYMFPKAHAAAYVMMAYRIAYCKINYPLA 1369

Query: 787  FLAASM---------------------------------TLEMDNVEKIKKFCQDARQFN 813
            + AA                                   + +  +V K  K  Q+     
Sbjct: 1370 YYAAYFGIRADAFSYALMCQGKETLNYHIKQYKSKGDQLSKKEQDVLKDMKIVQEMYARG 1429

Query: 814  IQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
             + +P  +       F++ D ++  SLA+I+G+G   A  + EA+ D  + SL+DF  R 
Sbjct: 1430 FEFVPIDIYRAKAKMFQIVDGKLMPSLASIEGMGDKAAEAVEEAAKDGAYLSLDDFRQRT 1489

Query: 873  DSKKLNRRVLESLVFAGALDCF 894
               K+++ V++ +   G     
Sbjct: 1490 ---KVSKTVIDLMAELGLFGDL 1508



 Score = 72.5 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 4/90 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--SQKACAAG--I 67
           V L  H+  S ++G   + +I+ +      PAIAITD     +  +     +        
Sbjct: 394 VELHCHTKMSDMDGVSEVKDIVKRAHDWGHPAIAITDHGVAQAFPDANHYIETLDKDDPF 453

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           + + G +  +         N G        
Sbjct: 454 KVLYGVEGYVVDDLTEIAVNAGNQTLDDTY 483


>gi|325571082|ref|ZP_08146654.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755]
 gi|325156167|gb|EGC68353.1| DNA polymerase III PolC [Enterococcus casseliflavus ATCC 12755]
          Length = 1449

 Score =  211 bits (536), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 140/924 (15%), Positives = 282/924 (30%), Gaps = 177/924 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            + +    N  +  +            +L  T  G + L +L+S
Sbjct: 582  FVKEAMEKH-------DMLLHEDLNRHVGGENSYKAARPFHATILARTQAGLKNLFKLIS 634

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
               +     +  RI  S L ++  EGL++ T    G +  A        A +    +   
Sbjct: 635  MSNVKYFHDKVPRIPRSELVKL-REGLLVGTACDKGEVFVAMMQKGVDAARELAKFYDYI 693

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L +           ++Q+       +VAT N+ +L+EED     V
Sbjct: 694  EVMPKAVYAHLLETELVKSEKDLEDIIRNLIQMGEELGKIVVATGNAHYLNEEDAIYRKV 753

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            L+                       +       F     A E  V    + + + +   P
Sbjct: 754  LINSMGGA-NPLNRHSLPDVHFRTTDEMLTAFQFLGPEVAKEIVVTNPNKIADLCEKVIP 812

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
            +       +        E E+ + +    +              +   +RL  EL+ I  
Sbjct: 813  VKDDLYTPKIPG----SEQEITDLSYNRAKELYGDPL------PEIVEKRLKKELDSIIG 862

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 863  NGFSVIYLISQKLVHKSNQDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPDCQYS 921

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  + + E
Sbjct: 922  EFYEDGSYGSGYDMPEKKCPKCGTRLNKDGHDIPFETFLGFHGDKVPDIDLNFSGEYQPE 981

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  K A   V                            
Sbjct: 982  AHNYTKVLFGEEYVYRAGTIGTVADKTAFGFV---------------------------- 1013

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                    F            +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1014 ------KGFERDHNLHYRAAEVDRLAKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1067

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1068 PADDQNSEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IDPKTIPTDDPE 1124

Query: 605  DHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +            + +  GTLGI +  +  +R  L+   P    +++ +  L    
Sbjct: 1125 VMRIFGGTDVLGVTEEQIYSKTGTLGIPEFGTRFVRGMLDQTHPSTFAELLQISGLSHG- 1183

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1184 ------TDVWLGNAEELIRRGDASLAEVIGCRDDIMVYL--------IHAGLDDGMAFKI 1229

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++          A +        ++    +     Y F K+HAAAY +++
Sbjct: 1230 METVRKGQWNKIPDDLRDTYLQAMRENNVPEWYIDSCSKI----KYMFPKAHAAAYVLMA 1285

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K ++P+ +  A  ++  D+ + I                               
Sbjct: 1286 LRVAYFKVYFPILYYCAYFSVRADDFDLIAMSKGKDAVKERMQEITDKGLDASTKEKNLL 1345

Query: 805  ----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                   +  +   +     +     + F +   ++     A+  +G   A+ I+EA  +
Sbjct: 1346 TVLELANEMLERGYEFGMIDLYKSDAENFVIDGKKLIAPFRAVPSLGLNVAKQIVEARKN 1405

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLE 883
             PF S ED  +R    K+++ ++E
Sbjct: 1406 GPFLSKEDLANR---GKVSKTLIE 1426



 Score = 81.0 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++   ++ + + +       AIAITD        +       AG++ + 
Sbjct: 337 VELHLHSNMSTMDATNNVADFVAQAGKWGHKAIAITDHGGAQGFPDAHHAGEKAGVKILY 396

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N    P      IV 
Sbjct: 397 GVEANIVDDGVAVAYNPKPVPLTDATYIVF 426


>gi|256845844|ref|ZP_05551302.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium
            sp. 3_1_36A2]
 gi|256719403|gb|EEU32958.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium
            sp. 3_1_36A2]
          Length = 1449

 Score =  211 bits (536), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 150/894 (16%), Positives = 302/894 (33%), Gaps = 157/894 (17%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS-----G 153
            I++LV T  G + +  LVS  ++   G +  RI  S L E   EGLI+ +  ++     G
Sbjct: 612  IMVLVKTQAGLKNMYRLVSEAHIKYFGNKKARIPKSVLVE-NREGLIIGSSLTAHFMNTG 670

Query: 154  PIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYVNLQ------RHRGYDR--YRESQVVQL 203
             +   +  +  +  E+    +   +L     Y  L           Y+           L
Sbjct: 671  ELVDLYLRHDLEKLEEAAKFYDYIELLPKSTYNELIEKDGTGALGSYEEVEKMNKYFYNL 730

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                 + + A++N  +L  E+ +    ++     TV + +        ++      +   
Sbjct: 731  GKKLGILVTASSNVHYLD-ENEDIIRSILLYGSGTVYNSRQYSINNGFYFRTTDEMLQEF 789

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
                    +  V      + I  +    +    E       +  E  +R           
Sbjct: 790  SYLGENVAKEVV--VTNTNKIADMIESGIRPIPEGFYPPKMENAEEIVRTMTYEKAYRIY 847

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                            RL+ ELN I    FS  +L     ++ +  N   VG  RGS   
Sbjct: 848  GDPL------PDIVSARLERELNAIINNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGS 900

Query: 384  SVTAYALTITDIDPLR-----------------------------------------FSL 402
            S+ A+ + IT+++ L                                          +S+
Sbjct: 901  SLVAFMMGITEVNALYPHYICDNPECKYSEFIEREGVGIDLPDKICPKCNAKLRKDGYSI 960

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE F+      +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V 
Sbjct: 961  PFEVFMGFKGDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAEAYVR 1020

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            +                              +D+     R     + RL + ++K     
Sbjct: 1021 K----------------------------YFEDNNLNAVRAEIIRLGRLCQGAKKTT--- 1049

Query: 523  RHASTHAAGIVIGDR--PLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLK 577
                 H  G+VI  +   + +  P+ R    +      T ++   +++  L+K D LG  
Sbjct: 1050 ---GQHPGGMVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDE-QLVKLDILGHD 1105

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGM 635
              T ++     L Q    +++  IP  D +T  + ++  +LG+   Q+ +      +   
Sbjct: 1106 DPTTIK-----LLQEYTNMEIKDIPLADEDTLKIFSSTESLGVTPEQIGTEIGTYGIPEF 1160

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
                +  +   +   RP     +V  +   +G    ++         + T   II     
Sbjct: 1161 GTGFVRQM---LIDTRPTTFAELVRISGLSHGTNVWLNNAQEFVRNGQATLSQIITVRDD 1217

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            +    +  G   S+A  +   + K   ++  +  E++ +   +  +      +   +   
Sbjct: 1218 IMNYLIDQGLDNSDAFKIMEFVRKGKPKKEPENWEKYSAMMKEKNVPDWYIESCRRI--- 1274

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK-------------- 801
              +Y F K HA AY +++ + A+ K H P+ F AA ++ + D+ +               
Sbjct: 1275 --EYMFPKGHAVAYVMMAMRIAYFKVHQPLAFYAAFLSRKADDFDMEVMSRGILAKQKLE 1332

Query: 802  -----------------IKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIK 843
                             I +   +     ++++P  +       F + DN+I   L  I 
Sbjct: 1333 ELSKEPKLDPKKKNEQAICEIVVEMEARGLELLPVDIYLSDGKKFTIEDNKIRIPLIGIN 1392

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            G+G      I++   +  F S+ED   R    K+ + V++ L   GA+     +
Sbjct: 1393 GLGGAVIDAIVKEREEGKFISVEDLKRRT---KIQQPVVDKLKNIGAISSLSET 1443



 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
           V L  H+  S + G   + +I+ +       AIAITD + + S     + A         
Sbjct: 331 VELHAHTKMSEMVGVTDVEDIIKRAKEYGHKAIAITDYSVVHSYPAAFKTAKKLSTDEEK 390

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           ++ I GC++ +   +   +TN           +V 
Sbjct: 391 MKAIFGCEMYMIDDEAPMVTNPKDKKIDDEEFVVF 425


>gi|299823038|ref|ZP_07054924.1| DNA polymerase III PolC [Listeria grayi DSM 20601]
 gi|299816567|gb|EFI83805.1| DNA polymerase III PolC [Listeria grayi DSM 20601]
          Length = 1470

 Score =  211 bits (536), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 156/923 (16%), Positives = 296/923 (32%), Gaps = 185/923 (20%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++    Q N  M               +    A G + L +L+S+  + +   +  RI  
Sbjct: 622  EITNHNQLNNYMGEGEAYKRARPFHATIYAQNAVGLKNLFKLISQSNI-NYFFRVPRIPR 680

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NL 186
            S L+++  EGLI+ T  + G +  A      Q AE+    +   ++    +Y       L
Sbjct: 681  SQLKKL-REGLIIGTACNQGELFEAMMQKGMQEAERVAEFYDFIEVQPKPVYAPLIEREL 739

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R           +V++      P+VAT N  +    D     +L+        +  +R 
Sbjct: 740  VRDEKALEEIIKNIVKVGEKTGKPVVATGNVHYKDPHDKIYRKILIFSQGG--ANPLNRA 797

Query: 247  RVTPDHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             +   H+      +         +A E  V  +   +  ++   PI       + +    
Sbjct: 798  ELPEVHFRSTSEMLEEFAFLGEEKAEEIVVTNSNLVADWIEDVKPIKDELYTPKIEG--- 854

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E+E+RN +         +         +    RL+ EL  I    FS  +LI    ++
Sbjct: 855  -AEDEVRNMSYDMAHHLYGENL------PEIVEARLEKELKSIIGHGFSVIYLISHKLVK 907

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------------- 399
             +  +   VG  RGS   S+ A  + IT+++PL                           
Sbjct: 908  KSLIDGYLVG-SRGSVGSSLVATMMEITEVNPLAPHYLCPECKHAEFFDDGSIGSGFDLP 966

Query: 400  ---------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL      +PD D++F  + +     Y +  +G + V 
Sbjct: 967  DKKCPHCGAEYQKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPVAHAYTKELFGEDYVY 1026

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T G++  K A   V R  +       R  +                           
Sbjct: 1027 RAGTIGTVAEKTAFGFV-RGYERDNGLTIRGAE--------------------------- 1058

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDV---RSDLPVTQFN 559
                  +  +     G+ R    H  GI  +     +    P+        S+   T F+
Sbjct: 1059 ------VDRLVAGCTGVKRTTGQHPGGIIVIPDYMDVYDFSPVQFPADATDSEWKTTHFD 1112

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--- 616
               I    ++K D LG    T ++     + Q    +D   IP DD E   L  +     
Sbjct: 1113 FHSIHD-NVLKLDILGHDDPTAIR-----MLQDLSGIDPKTIPTDDEEVMKLFGSTESLG 1166

Query: 617  -----------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                       TLGI +  +  +RQ LE  +P    +++ +  L                
Sbjct: 1167 VKPEDIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG-------TDVWLG 1219

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N +E I +    +  ++     ++++         +  G   S A  +  ++ K      
Sbjct: 1220 NAEELIKNKICELPDVIGCRDDIMVFL--------IYQGLESSLAFKIMESVRKGKGLTE 1271

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            + ++             +    + +    K   Y F K+HAAAY +++ + A+ K H+P+
Sbjct: 1272 EMEQAMI----------ENKVPDWYIDSCKKIKYMFPKAHAAAYVLMAVRIAYFKVHHPL 1321

Query: 786  EFLAASMTLEMDNVEKIKK---------------------------------FCQDARQF 812
             F A   T+  D+ +                                        +    
Sbjct: 1322 FFYATYFTVRADDFDLTAMVNGREAVKAQMKEINSKGMEASTKEKNLLTVLEIANEMLAR 1381

Query: 813  NIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                    +     D F +  + +     A+  +GT  A+ I+ A  +  F S ED   R
Sbjct: 1382 GYHFKKVDLYKSSADEFIIDGDALIPPFNAVPSLGTNVAKQIVAARENGEFLSKEDLQQR 1441

Query: 872  VDSKKLNRRVLESLVFAGALDCF 894
                K+++ +++ L   G L+  
Sbjct: 1442 ---GKVSKTIIQYLDDQGCLEGL 1461



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S++++  + A     AIAITD   + S  E        G++ I 
Sbjct: 368 VELHLHTPMSQMDATSSVDSLFKQAADWGHKAIAITDHAAVQSFPEAYNAGKKYGLKVIY 427

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           +V 
Sbjct: 428 GVEANLIDDGVPIAYNDQSIDLKEATYVVF 457


>gi|170288275|ref|YP_001738513.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
 gi|170175778|gb|ACB08830.1| DNA polymerase III, alpha subunit [Thermotoga sp. RQ2]
          Length = 842

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 210/831 (25%), Positives = 344/831 (41%), Gaps = 106/831 (12%)

Query: 196  RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV-----LMAVAHSTVVSQKDRPRVTP 250
            R  ++  L  +  L  V   +  F +   +           +            R R   
Sbjct: 17   RFEKLALLLKSKGLKSVILADRNFHAAVKFNTIMRKHGLIPVHGLWKGGRIFVARNREEF 76

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI-------------LQVHAPILPRFIE 297
            D  ++  S       D+P   E+ +   R                  L       P   E
Sbjct: 77   DRLVRYYSGETHELEDIPVFHESELTPVRYLDVYEKKASIFMRKVFGLDEDVQGFPEKCE 136

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA-QDYRQRLDFELNVIARMKFSGY 356
               D +  E  +   N           +  I K     ++Y  RL  EL VI R  F+ Y
Sbjct: 137  DVADILNAEAYDLRVNHRFPTPPKGWNESLIKKAEPLGEEYISRLKRELEVIKRKGFTPY 196

Query: 357  FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
               V   ++ AKK  I VGPGRGS  GS+ AY   IT++DP+++ LLFERFLN +R   P
Sbjct: 197  IYTVEKVVEIAKKMGIKVGPGRGSAVGSLVAYLCGITEVDPIKYDLLFERFLNEERQEPP 256

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D+D    RR ++I+ +   +   +V Q+ TFG+L  K+    +               
Sbjct: 257  DIDVDVEDRRRKDLIKELSKSF---QVYQVSTFGNLTEKSLKNLI--------------- 298

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
                      +   ++ + +   +     P                   S HAAG+VI +
Sbjct: 299  -------NSVLPDASLEEKNEIYKTVYGLPHH----------------PSVHAAGVVISE 335

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
             PL    P+   +  D+P+T ++M  +++ G++K D LGLKTL+ ++             
Sbjct: 336  NPL----PLPTRMEEDIPITDYDMYDLQEIGVVKIDILGLKTLSFIKDFKK--------- 382

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
               +  + D +TYHL++   TLG+FQLE    R+    + P  ++++  L++L RPGP+ 
Sbjct: 383  --EIFDYSDEKTYHLISKGKTLGVFQLEGLQARKLCRRISPRNMDELSILLALNRPGPLR 440

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            + +                        ET+GV+IYQEQ+M++A + +G S +EAD+LRRA
Sbjct: 441  SGLDVMFSNPKNVPEFF-----RKTFPETRGVLIYQEQIMRLA-MFAGLSGTEADILRRA 494

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            + KK +E+M+   E+   G  + G+    A  I E+L  F+ Y FNKSH+ AYA I+YQT
Sbjct: 495  IAKKEREKMEPLLEKMKKGLLEKGM--ENAEQILEILLNFSSYAFNKSHSVAYAHITYQT 552

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
            A++K H+  EF          + EKI    Q+ R    ++ PP +NT   +       +Y
Sbjct: 553  AYLKVHHLEEFFKLYFAYNSSDTEKIFLAVQELRSEGYRVHPPDINTSGKELVFHGKDVY 612

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
              L  +KGVG T    I +     P +S+ +   RV    + R V+E+L+ AGA D    
Sbjct: 613  LPLTVVKGVGATLVEQIEKIR---PINSVRELQERV--TGVPRNVVENLITAGAFDKLYE 667

Query: 897  SRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            +R   L+ L+   +      +       ++F  +    S  + +   +            
Sbjct: 668  NRKLALEELNKKVEKDILEIR-------SLFGEKVEQESSTVKIGDITELEEK------- 713

Query: 957  RVLGFYFSG-H--PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +GF  +  H  P  ++  I            +      NI    + V +
Sbjct: 714  -SMGFPLTPVHEVPTGLFARIADVFTYGRILPVLVKRVSRNIVTDGLSVCR 763



 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 16 VHSSYSLLEG-ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          V S YS  +G  +    +   + +    ++ + D  N  +A++F+      G+ P+ G
Sbjct: 5  VISPYSF-DGSVVRFEKLALLLKSKGLKSVILADR-NFHAAVKFNTIMRKHGLIPVHG 60


>gi|317056777|ref|YP_004105244.1| DNA polymerase III subunit alpha [Ruminococcus albus 7]
 gi|315449046|gb|ADU22610.1| DNA polymerase III, alpha subunit [Ruminococcus albus 7]
          Length = 1500

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 156/933 (16%), Positives = 291/933 (31%), Gaps = 177/933 (18%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            + +DM + L       T    V   ++LV    G + L +L+S   L    K+  RI  S
Sbjct: 621  ITVDMLNGLLGELDSITETKDVYHQIILVRNNIGLKNLYKLISDSNLK-YFKRRPRIPKS 679

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR---- 190
             L ++  EGLI+ +    G + +A+  N      K++  F        Y+ +Q       
Sbjct: 680  ELTKL-REGLIVGSACERGEVIQAYLENKPYEYIKQIAAFYD------YLEIQPDGNNMF 732

Query: 191  -------GYDR--------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
                    YDR             +V+L     +P+ AT +  FL++ED +   ++ A +
Sbjct: 733  MLTAEKPPYDRIKTVEDVKDINRFIVKLGEDLGIPVCATGDVHFLNKEDAKFRAIIQA-S 791

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                      P                      E +            I           
Sbjct: 792  MGFSDCDNQAPLYLKSTTQMLEELSYLGEDKAFEVVVT--NTNNVADMIDADLQAFPVGT 849

Query: 296  IEKECDDIQKEEENELRNKAVA--------GLEVRLAQGAIAKGYHAQDYR----QRLDF 343
                 +    E +     KA           +EV   +      Y  +       +RL  
Sbjct: 850  YTPFIEGAVYELQIICWRKACELYGDCDPMSIEVPEGEDVDVSAYFEEHVHPLVFKRLKR 909

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---- 399
            EL+ I +  FS  ++I    + ++ +    VG  RGS   S  A    I++++PL     
Sbjct: 910  ELDSIIKHGFSVLYMISQKLVAYSNECGYQVG-SRGSVGSSFVASMSGISEVNPLEPHYI 968

Query: 400  -------------------------------------FSLLFERFLNPDRMSMPDFDIDF 422
                                                   + FE FL  D    PD D++F
Sbjct: 969  CRKCHYSEFFENGEYGSGFDLPPKDCPNCGIPMHRDGHKIPFETFLGFDGDKAPDIDLNF 1028

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              D + +V +Y +  +G + V +  T G++  K A   V + L                +
Sbjct: 1029 SGDCQGKVHKYTEELFGQDHVFKAGTIGTVADKTAYGYVRKYLD---------------E 1073

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLS 540
                      A+ +  +                     + R  S H  G+V   GD  + 
Sbjct: 1074 RGKT------ANAAEIQRLVN-------------GCVDVKRTTSQHPGGMVVIPGDYEVY 1114

Query: 541  QLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
               P+        SD+  T F+   +    ++K D LG    T+ +       +    ++
Sbjct: 1115 DFTPVQHPADKVDSDMVTTHFDFHSLHDT-ILKLDELGHDVPTMYK-----YLEDFTHMN 1168

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            ++  P  D   Y L T+  +LG+         +      P+     +  + L       +
Sbjct: 1169 INDCPMSDPAVYSLFTSPDSLGV--TAEDIKCETGTLGIPEMGTPFVRGMLLESKPKNFS 1226

Query: 658  IVVYNNRKNGKEKIVSIH-PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             ++  +  +    +   +   +          +I     + +  L        A  +   
Sbjct: 1227 DLLQISGLSHGTDVWLGNAQELIKNGTCDISNVIGTRDSIMVYLLEHHLEPKLAFKIMEI 1286

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
              K    +     E        + + +    +  ++      Y F K+HAAAY   + + 
Sbjct: 1287 TRKGKAPK--LLTEEMKQDMRAHDVPEWYIDSCLKI-----KYMFPKAHAAAYVTAAIRL 1339

Query: 777  AWMKTHYPVEFLAASMTLEMDNVE----------------------------------KI 802
             W K H P+ F A   T+  ++ +                                   +
Sbjct: 1340 CWFKVHEPLAFYATYFTVRGEDFDAETTLKGIYMVRDKIDRLNNMSKDERSGKDSGVLDM 1399

Query: 803  KKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
                 +      + +P  +N      +++ D +I     AI GVG   A  I E +    
Sbjct: 1400 LMLTNEMMSRGYEFLPIDINKSHAYIYEIEDGKIRLPFVAINGVGLNAALAIYEKAKKND 1459

Query: 862  FDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            F S+E+F     +  +++ V+E+L   GA    
Sbjct: 1460 FISIEEFQM---NSGISKTVIEALENIGAFGDL 1489



 Score = 79.8 bits (195), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA---CAAG-- 66
           V L  H++ S+++   +   ++ K A     A+AITD   +        K      +G  
Sbjct: 359 VELHCHTNMSMMDALAAPEKLVAKAAGWGHKALAITDHGVVQGFPAAGTKCSDIRKSGQE 418

Query: 67  IQPIIGCQLD 76
            + + G +  
Sbjct: 419 FKILYGVEAY 428


>gi|210622608|ref|ZP_03293268.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275]
 gi|210154109|gb|EEA85115.1| hypothetical protein CLOHIR_01216 [Clostridium hiranonis DSM 13275]
          Length = 1426

 Score =  210 bits (535), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 150/940 (15%), Positives = 298/940 (31%), Gaps = 191/940 (20%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F       G++          + D   +  +          I L+     G + L ++
Sbjct: 568  IKFLGMLKKQGVE---------KLSDVNTVLGKVDYTKLKTHHITLIAKNQTGIKNLYKI 618

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL--- 172
            VS  + ++   ++ RI  S L E   EG+I+ +   +G +  A          ++++   
Sbjct: 619  VSDAH-VNHFYRAPRILQSVLDEY-REGIIVGSACEAGVVYDAVKKRLPDEEMEKIIAPY 676

Query: 173  TFKKLFG-DRLYVNLQRHRGYDR----YRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
             + ++   D     +      D         +VV+ A       VAT +  FL +     
Sbjct: 677  DYIEVMPIDNNRFMIDNGDVEDEDELKEINKRVVETAKKFGKIPVATGDVHFLDK----- 731

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQ 286
            HD ++          K     T  H+      +          A E  VE     + +++
Sbjct: 732  HDAVLRRVLKFSQGFKLDDEETYLHFRTTDEMLDEFSYLGEELAYEVVVENTNLIADMVE 791

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               PI         +      + ELR                      +   +RL+ ELN
Sbjct: 792  DVKPIPDETYPPVIEG----SDVELREMCFKKAVDIYGDPL------PEIVEKRLNRELN 841

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------- 399
             I    ++  ++I    +  +  +   VG  RGS   S  A    IT+++PL        
Sbjct: 842  SIIGNGYAVMYIIAQKLVAKSLSDGYLVG-SRGSVGSSFAATMSDITEVNPLPAHYVCPN 900

Query: 400  ------------------------------------FSLLFERFLNPDRMSMPDFDIDFC 423
                                                  + FE FL  +    PD D++F 
Sbjct: 901  KECKYSYFYAIGEWGSGIDLPDKVCPKCGEKLIKNGHDIPFEVFLGFEGDKEPDIDLNFS 960

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
               +  + +Y +  +G   V +  T G++  K A     + ++                 
Sbjct: 961  GSYQPVIHKYTEELFGEGHVYRAGTIGTVAEKTAFGYAKKYVE----------------- 1003

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG--IVIGDRPLSQ 541
                                 +     +L +++   G+ R +  H  G  ++   + +  
Sbjct: 1004 -----------------ENDIEVPSAEVLRLAEGCTGVKRTSGQHPGGVMVIPDYKDVYD 1046

Query: 542  LVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
              P+          +  T F+   I    ++K D LG    T+++   D        + L
Sbjct: 1047 FTPIQYPANDVNCGVITTHFDYHSI-SGRILKLDILGHDGPTIIRMLEDITGITITDIPL 1105

Query: 599  SLIPFDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                     T           +    G L I +  +  +RQ L   +P    +++ +  L
Sbjct: 1106 DDPATMSLFTSTEALGVTPEEIDCEIGCLAIPEFGTKFVRQMLLDTKPTTFAELVRISGL 1165

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
                            N ++ +      +  ++     ++ Y         +  G     
Sbjct: 1166 SHG-------TDVWVNNAQDLVRENIVGLKEVISTRDDIMNYL--------IFKGLQPKM 1210

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            +  +  ++ K    + +       +   +N +      +  ++      Y F K+HA AY
Sbjct: 1211 SFTIMESVRKGRGLKPE-----HEAAMIENNVPDWYINSCKKI-----KYMFPKAHAVAY 1260

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------------------------- 800
             + S++ A+ K HYP  F A   T ++++ +                             
Sbjct: 1261 VMTSFRLAYCKVHYPEAFYATYFTTKVEDFDADLIIKGYDAIKAKKKEIEELGNDATQKE 1320

Query: 801  ----KIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNR-IYYSLAAIKGVGTTTARHIM 854
                 I +  Q+     I+I P  +      +F+V     +   + A++GVG   A HI+
Sbjct: 1321 KGMYIILEVAQEMYARGIKIAPVDIYKSSATEFEVIGPGLLRPPMTALQGVGENAAIHIV 1380

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            E   +  F S EDF  R    K++R V+E+L   G+L   
Sbjct: 1381 EERENGEFISKEDFRKRT---KISRTVVETLDKHGSLGSM 1417



 Score = 96.8 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 33/86 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++   S+  ++ + A    PAIAITD   +    +    A   GI+ + 
Sbjct: 327 VELHAHTQMSSMDAICSVKGLVSRAAKWGHPAIAITDHGVVQGFPDAMNAAKKEGIKVLY 386

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +   +   + +          
Sbjct: 387 GVEGYLTEDNKDAIEDANDKSLSQEF 412


>gi|312143668|ref|YP_003995114.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
 gi|311904319|gb|ADQ14760.1| DNA polymerase III, alpha subunit [Halanaerobium sp. 'sapolanicus']
          Length = 1401

 Score =  210 bits (535), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 166/924 (17%), Positives = 314/924 (33%), Gaps = 198/924 (21%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
            +++D     ++           VLL    +G + L +LVS  +L D   +  RI  S L 
Sbjct: 558  NLKDINDYISKIDWKDLRPFHAVLLAKNKKGLKNLYKLVSISHL-DNFYRKPRILKSKLL 616

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYR- 196
            +   +GL++ +   SG I +AF  N  +   K++           Y+ LQ     +    
Sbjct: 617  Q-HRKGLLIGSACESGQIYQAFINNRPKNEIKKIAKLYD------YLELQPLANNEFLIP 669

Query: 197  ------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
                          ++ QL       +VAT ++ FL  +D    ++L A  +        
Sbjct: 670  EKVNSREDLININKKIYQLGQELNKEVVATTDAHFLDPKDSIFREILQAGQN----FADA 725

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
              +    +           + D   A E  ++   +    ++   PI       E +   
Sbjct: 726  ENQPPLYYRTTEEMLAEFSYFDGQTAKEIVIDNPNKILSKIEAIQPIPDGLYTPEIEG-- 783

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               E+E+R  A         Q         Q    RL+ ELN I    F+  +LI    +
Sbjct: 784  --AEDEIREMAYQKAHQYYGQ------ELPQLVIDRLEKELNSIIENGFAVIYLIAHKLV 835

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------- 399
            + +  +   VG  RGS   S  A    IT+++PL                          
Sbjct: 836  KKSLDDGYLVG-SRGSVGSSFVATMTGITEVNPLPPHYRCPECSNYEFVDSESVGSGIDL 894

Query: 400  ---------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                           F + FE F+  +   +PD D++F  + + E+ RY ++ +G + V 
Sbjct: 895  ADKKCECGAKYIKDGFDIPFEVFMGFEGNKVPDIDLNFSGEYQSEIHRYTEDYFGRDYVY 954

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T  ++  + A   V               K   +D    V    I            
Sbjct: 955  KAGTISTIADRTAFGFV---------------KNYLDDRGIEVKRAEIDR---------- 989

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFN 559
                     + +   G+ R    H  G++I  +   +    P+         D+  T F+
Sbjct: 990  ---------LVKGCTGVRRTTGQHPGGLMIVPKSKNIFDFTPIQHPANDQETDIRTTHFD 1040

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--- 616
               I    ++K D LG    T L+     + +    ++   +P DD  T  + ++     
Sbjct: 1041 YHSI-SGRILKLDLLGHDDPTSLK-----MLEDMTGIEPKKVPLDDQATMSIFSSTDKLG 1094

Query: 617  -----------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                       TLGI +  +S ++Q L   +P    +++ +  L                
Sbjct: 1095 VDSAVLGTDIGTLGIPEFGTSFVQQMLRDTRPSSFSELVRISGLSHG-------TDVWLN 1147

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N ++ I      +  ++     ++ Y         L  G    +A V+   + K      
Sbjct: 1148 NAQKLIKQGKAKLAEVISVRDDIMNYL--------LTKGLDPLKAFVIMENVRKGKGLTE 1199

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +++                   N +    K   Y F K+HAAAY +++Y+ A+ K H+P 
Sbjct: 1200 EEENIMR----------DKNVPNWYIDSCKKIKYMFPKAHAAAYVMMAYRIAYFKVHHPA 1249

Query: 786  EFLAASMTLEMDNVE---------------------------------KIKKFCQDARQF 812
             F     +++ D+ +                                 K+ K   +A   
Sbjct: 1250 AFYTTYFSIKADDFDAQLACNGKAKVIAKIKELENKGNEITTKESGTLKVLKIVLEAMMR 1309

Query: 813  NIQIMPPSVNTPCV-DFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
             I+ +   +      +F+ +GDN++   L +++G+G + A  ++       F S+E+  +
Sbjct: 1310 GIEFLAVDIYQSKATEFQHLGDNKLLAPLISLQGLGGSAAESVVREREKSDFTSIEELSN 1369

Query: 871  RVDSKKLNRRVLESLVFAGALDCF 894
            R     L + V+E L   G+LD  
Sbjct: 1370 RT---CLTKTVIEVLKEHGSLDEL 1390



 Score = 85.2 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 34/88 (38%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H+  S ++  +++  ++ + A     A+AITD   + +  +  Q      +Q I G 
Sbjct: 304 LHLHTQMSSMDCVMNVKKLVKRAADWGHKAVAITDHGVVQAFPDAYQAGQKHDVQIIYGL 363

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           +  +       + N           +V 
Sbjct: 364 EAYLVDDGEPIINNPYPAEIKQTEFVVF 391


>gi|257876620|ref|ZP_05656273.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20]
 gi|257810786|gb|EEV39606.1| DNA polymerase III PolC [Enterococcus casseliflavus EC20]
          Length = 1449

 Score =  210 bits (535), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 143/924 (15%), Positives = 288/924 (31%), Gaps = 177/924 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A           ++ +  + N  +  +            +L  T  G + L +L+S
Sbjct: 582  FVKEAMEKH-------EMLLHEELNRHVGGENSYKAARPFHATILARTQAGLKNLFKLIS 634

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
               +     +  RI  S L ++  EGL++ T    G +  A        A +    +   
Sbjct: 635  MSNVKYFHDKVPRIPRSELVKL-REGLLVGTACDKGEVFVAMMQKGVDAARELAKFYDYI 693

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L +           +V++       +VAT N+ +L+EED     V
Sbjct: 694  EVMPKAVYAHLLETELVKSEKDLEDIIRNLVKMGEELGKIVVATGNAHYLNEEDAIYRKV 753

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            L+        +  +R  +   H+      + +     PEA +  V         L     
Sbjct: 754  LINSMGG--ANPLNRHSLPDVHFRTTDEMLTAFQFLGPEAAKEIVVTNPNKIADLCEK-- 809

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             +    +          E E+ + +    +              +   +RL  EL+ I  
Sbjct: 810  -VIPVKDDLYTPKIPGSEQEITDLSYNRAKELYGDPL------PEIVEKRLKKELDSIIG 862

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  + ++   VG  RGS   S  A    IT+++PL            
Sbjct: 863  NGFSVIYLISQKLVHKSNEDGYLVG-SRGSVGSSFVATMTGITEVNPLAPHYYCPDCQYS 921

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  + + E
Sbjct: 922  EFYEDGSYGSGYDMPEKKCPKCGTRLNKDGHDIPFETFLGFHGDKVPDIDLNFSGEYQPE 981

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  K A   V                            
Sbjct: 982  AHNYTKVLFGEEYVYRAGTIGTVADKTAFGFV---------------------------- 1013

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                    F            +  +++   G+ R    H  GI+       +    P+  
Sbjct: 1014 ------KGFERDHNLHYRAAEVDRLAKGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQY 1067

Query: 548  DVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                   +   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1068 PADDQNAEWKTTHFDFHSIHD-NILKLDILGHDDPTVIRMLQDLSG--IDPKTIPTDDPE 1124

Query: 605  DHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
                +            + +  GTLGI +  +  +R  L+   P    +++ +  L    
Sbjct: 1125 VMRIFGGTDVLGVTEEQIYSKTGTLGIPEFGTRFVRGMLDQTHPSTFAELLQISGLSHG- 1183

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1184 ------TDVWLGNAEELIRRGDASLAEVIGCRDDIMVYL--------IHAGLDDGMAFKI 1229

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++          A +        ++    +     Y F K+HAAAY +++
Sbjct: 1230 METVRKGQWNKIPDDLRDTYLQAMRENNVPEWYIDSCSKI----KYMFPKAHAAAYVLMA 1285

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K ++P+ +  A  ++  D+ + I                               
Sbjct: 1286 LRVAYFKVYFPILYYCAYFSVRADDFDLIAMSKGKDAVKERMQEITDKGLDASTKEKNLL 1345

Query: 805  ----FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                   +  +   +     +     + F +   ++     A+  +G   A+ I+EA  D
Sbjct: 1346 TVLELANEMLERGYEFGMIDLYKSDAENFVIDGKKLIAPFRAVPSLGLNVAKQIVEARKD 1405

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLE 883
             PF S ED  +R    K+++ ++E
Sbjct: 1406 GPFLSKEDLANR---GKVSKTLIE 1426



 Score = 81.0 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++   ++ + + +       AIAITD        +       AG++ + 
Sbjct: 337 VELHLHSNMSTMDATNNVADFVAQAGKWGHKAIAITDHGGAQGFPDAHHAGEKAGVKILY 396

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N    P      IV 
Sbjct: 397 GVEANIVDDGVAVAYNPQPVPLTDATYIVF 426


>gi|312869005|ref|ZP_07729182.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            oris PB013-T2-3]
 gi|311095431|gb|EFQ53698.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            oris PB013-T2-3]
          Length = 1444

 Score =  210 bits (535), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 149/894 (16%), Positives = 282/894 (31%), Gaps = 169/894 (18%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++      N  M             + LL  T  G + L +LVS   +     +  RI  
Sbjct: 591  EIRYVDDLNQHMAENDAYKHARPFHVTLLAQTQAGLKNLFKLVSLSNVR-YFHRVPRIPR 649

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR----- 188
            + L +   EGL++ T  SSG +  A        A K+   +        Y+ +Q      
Sbjct: 650  TVLTKY-REGLLLGTACSSGEVFTAMMEKGYPEALKKARYYD-------YIEIQPRPNYA 701

Query: 189  -----HRGYDRYRESQVVQ----LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
                 H   DR     ++Q    L    + P+VAT +  +++  D     +L+       
Sbjct: 702  PLLETHVIADRDHLDDILQNMVKLGTELKKPVVATGDVHYINPHDGIYRRILINSQGGAN 761

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
               + R             E  S   +                 I     P+  +     
Sbjct: 762  PLNRTRRPDVHFRTTDEMLEEFSFLGEDTAKQVVVDNSHAIADMIADDIRPVKDKLYTPH 821

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 K  E E++++     +              +  + R++ ELN I +  FS  +LI
Sbjct: 822  M----KGAEQEIQDRTWNTAKAWYGNPL------PKIVKDRVELELNSIVKNGFSVIYLI 871

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------- 399
                +  + K+   VG  RGS   SV A    IT+++PL                     
Sbjct: 872  AQRLVAKSNKDGYLVG-SRGSVGSSVVATLSGITEVNPLPPHYRCPKCQFAHFYTKGEYS 930

Query: 400  ---------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
                                   + F+ FL      +PD D++F  D +     Y++  +
Sbjct: 931  SGFDLPEKKCPKCGTLLVKDGHDIPFQTFLGFKGNKVPDIDLNFSGDYQPIAHNYMKVLF 990

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G E V +  T G++  K A   V +A +       R                   ++ R 
Sbjct: 991  GEENVFRAGTIGTVADKTAYGYV-KAFERDNDVQFRGA-----------------EEDRL 1032

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRSD---L 553
                            SQ   G+ R    H AGI+I      +    P+           
Sbjct: 1033 ----------------SQGATGVKRTTGQHPAGIIIVPDDMDIYDFTPVQYPADDQNAAW 1076

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT 613
              T F+   I    ++K D LG    T+++       Q    +D   IP +D     L +
Sbjct: 1077 ETTHFDFHSIHD-NILKMDILGHDDPTMIR-----ALQDLSGIDPKTIPMNDPGVMALFS 1130

Query: 614  TKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
            +   LG+   Q++S      L       +  +   +    P     ++  +   +G    
Sbjct: 1131 SPRILGVTEEQIQSKTGTLGLPEFGTRFVRGM---LDDTHPKNYSQLLQISGLSHGTGVW 1187

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
            +     +      T   +I     +    +  G     +  +   + K      +     
Sbjct: 1188 LDNAQELIKEGTATIANVIGCRDNIMTDLIHYGLDSETSFQVMEHVRKGRGIPDE----- 1242

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            + S   K G+ +    +  ++      Y F ++HAAAY +++ + A+ K ++P+ +  A 
Sbjct: 1243 WQSKMLKVGVPQWYLDSCLKI-----KYMFPRAHAAAYVLMALRIAYFKVYFPLVYYCAF 1297

Query: 792  MTLEMDNVEKIKK---------------------------------FCQDARQFNIQIMP 818
             ++  D+ + +                                      +  +   +   
Sbjct: 1298 FSVRADDFDIVAMAHGKEAVKARMAEISNKGNDASAKEKSLLTILELANEMLERGFKFKM 1357

Query: 819  PSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              +      ++ +  N +     AI G+G + A+ I+ A  ++PF S E+   R
Sbjct: 1358 VDLERSDASNWLIDGNSLIAPFRAIPGLGLSVAKQIVAAREERPFLSKEELADR 1411



 Score = 91.0 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L  H+  S ++   S+  I  + +   QPAIA+TD  N+ +  E  +      ++ I 
Sbjct: 337 IELHTHTEMSQMDATNSITEIAKQASKWGQPAIAVTDHGNVQAFPEAYKAGKKFKLKMIY 396

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       + N+          ++ 
Sbjct: 397 GMEANVVDDGVPLVYNENHAQLKDNTYVIF 426


>gi|219883037|ref|YP_002478201.1| DNA-directed DNA polymerase [Arthrobacter chlorophenolicus A6]
 gi|219862043|gb|ACL42384.1| DNA-directed DNA polymerase [Arthrobacter chlorophenolicus A6]
          Length = 752

 Score =  210 bits (535), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 179/823 (21%), Positives = 315/823 (38%), Gaps = 126/823 (15%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +FVHL  HS YS  +   ++  ++   AAD Q A+A+TDT NL +A     +A   GI+P
Sbjct: 3   TFVHLNGHSEYS-SDSNATIKELVAAAAADGQGALALTDT-NLAAAPLLRAEARRHGIKP 60

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL--VSRMYLLDQGKQ 127
           IIG  + +       + N+  T    V  + LL     G+  L+ L   S +     G+ 
Sbjct: 61  IIGLDVRL-------VENRHSTDHQQVFHLTLLAENRTGWHNLVALYNSSAV----PGRS 109

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNL 186
              +    L  +  +GLI LTGG  GP++     N +  A       +   G  R+++  
Sbjct: 110 QSFVDHELLA-LHADGLIALTGGRRGPVEAFLDLNDADTARANFARLESTLGTGRVFLEA 168

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM---AVAHSTVVSQK 243
                 +  +    V +     + +VAT      + ED EA   LM   A        + 
Sbjct: 169 S---SPESAQLLTGVFMGRA--VHVVATGRYRQTALEDTEARQTLMDIRAGKEGRGYGEG 223

Query: 244 DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              R   +   +         +    A              +      +P F      D 
Sbjct: 224 GWLRTESEMRRQAPDSQAWQNAVTIAATV----GDAIHYDAIPEPGGNMPSFAVP---DG 276

Query: 304 QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
            +     LR+    G               + +  +RL+ EL VI     +   LI  D 
Sbjct: 277 FQSSGEYLRHLTFRGA-------GSRFDEISFEAIERLNNELEVIISKGAADSILITHDL 329

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           I+W   N+I  G  RG+ + S+  Y L ITDI+PL + L +ERFL P R  +P  DID  
Sbjct: 330 IKWCTDNDILTG-ARGNSSSSLVLYCLGITDINPLTYGLRYERFLRPGRTEIPGLDIDIQ 388

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
             R  +   Y+  ++  +RVA+  T   ++A                             
Sbjct: 389 ASRMQDAHGYLSKRWP-DRVARAATHSRVKA----------------------------- 418

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
               + + +  + +                 +  ++G + + + H   +VI  R L+  +
Sbjct: 419 -DTWTRRGLVSEEK-----------------AALVDGRFLNRNIHPCAVVIAARDLTDQL 460

Query: 544 PMYRDVRSDL----PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
           P+  D R+      PV  +  + +   G +  + LG  TL ++ ++              
Sbjct: 461 PVLPDRRAGHEHELPVANWEAQTLLNEGYLVLNLLGSATLDVVAQAAALARLDRGSPVHL 520

Query: 600 LIPFDD---------HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            +                + L+T   T G+F L +     A +  +P  + D+  L +L 
Sbjct: 521 GLLLPVGDDLYARSTPAAWDLITAGDTDGVFGLGAEEAVAAAKLARPRNLTDMAVLTAL- 579

Query: 651 RPGPIDNIVVYNNRKNGKEKIVSIHPL-----------IDPMLKETQGVIIYQEQVMQIA 699
             G  +    Y   +  + ++   H             +  +L  T G +++QEQVM + 
Sbjct: 580 -SGKEERRNRYLTARINRPRLRYYHLEHLTSEESEQAYLCRILAPTHGELVFQEQVMDLF 638

Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT-----------IAVN 748
             + G+S  +A+   R + KK ++     +E+F++GA +    +             A  
Sbjct: 639 STVGGFSDVDAEGAWRFLAKKPRDWS-GLREKFLAGAVQEKRGRAGDPYSMVFSAGTAEQ 697

Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
           +F+L+ +   + F+ SHA AYAV ++QTAW++ H+P  F    
Sbjct: 698 VFDLIMEAVPFLFSASHAHAYAVRTFQTAWLRAHFPEAFQRVL 740


>gi|225388986|ref|ZP_03758710.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme DSM
            15981]
 gi|225044966|gb|EEG55212.1| hypothetical protein CLOSTASPAR_02731 [Clostridium asparagiforme DSM
            15981]
          Length = 1561

 Score =  210 bits (535), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 149/904 (16%), Positives = 280/904 (30%), Gaps = 177/904 (19%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
             +D  ++L   N+          +++L     G   L  LVS  +L     +  RI  S 
Sbjct: 707  TLDQLNSLNAMNEDTIRKLPTYHVIILAKNDIGRINLYRLVSWSHLT-YYARRPRIPKSV 765

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-- 193
            L +   EGL++ +   +G + +A    +      RL+ F        Y+ +Q        
Sbjct: 766  LSQY-REGLLIGSACEAGELYQAMLRGAPASEVARLVHFYD------YLEIQPLGNNSFM 818

Query: 194  --------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
                          +    ++V L      P+ AT +  FL  +D     ++MA      
Sbjct: 819  LRDEKSTVKTEEDLKEINRRIVNLGEHFGKPVCATCDVHFLDPQDEVYRRIIMAGQG--- 875

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                   + + D           + ++      +  +     +             +  +
Sbjct: 876  ------FKDSDDQAPLYLRTTEEMLAEFDYLGPDKAQEVVVTNTRKIADMCEKISPVRPD 929

Query: 300  -CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
             C  +  + +  L             +         +    RL+ EL+ I    F+  ++
Sbjct: 930  KCPPVIPDSDKTLTKICYDRAHEMYGEDL------PKIVVDRLERELHSIITNGFAVMYI 983

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
            I    +  + ++   VG  RGS   S  A    IT+++PL                    
Sbjct: 984  IAQKLVWKSNEDGYLVG-SRGSVGSSFVATMSGITEVNPLSPHYHCPKCRYYDFDSEEVK 1042

Query: 400  --------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
                                      F + FE FL       PD D++F  + + +   Y
Sbjct: 1043 KFSGMAGCDMPDKACPVCGTPLEKDGFDIPFETFLGFKGDKEPDIDLNFSGEYQSKAHDY 1102

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
             +  +G  +  +  T G+L  K A   V +  +                           
Sbjct: 1103 TEVIFGKGQTFRAGTIGTLADKTAYGYVKKYYE--------------------------- 1135

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS 551
                    R +      +  I Q   G+ R    H  GI++      +    P+      
Sbjct: 1136 -------ERGSRKRNCEINRIVQGCVGVRRTTGQHPGGIIVLPLGEEIYSFTPVQHPAND 1188

Query: 552  DLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
                 VT           L+K D LG    T+++   D          +  IP D  E  
Sbjct: 1189 MTTSTVTTHFDYHSIDHNLLKLDILGHDDPTMIRMLQDLT----GIDPVKDIPLDSREVM 1244

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +   LGI   +  G         P+   D    + +       + +V         
Sbjct: 1245 SLFQSTAALGITP-DDIGGCPLGALGVPEFGTDFAMQMLIDTKPKYFSDLVRIAGLAHGT 1303

Query: 670  KIVSIH-PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
             +   +   +    K T    I     + I  +  G     +  +  ++ K    + D  
Sbjct: 1304 DVWLGNAQTLIQEGKATIQTAICTRDDIMIYLIAQGMDEGLSFTIMESVRKGKGLKDD-- 1361

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
               +I+  + +G+ +    +  ++      Y F K+HAAAY +++++ A+ K  YP+ + 
Sbjct: 1362 ---WITEMTAHGVPEWYIWSCKKI-----KYMFPKAHAAAYVMMAWRIAYCKIFYPLAYY 1413

Query: 789  AASMTLEMDNVEK---------------------------------IKKFCQDARQFNIQ 815
            AA  ++                                          +  Q+       
Sbjct: 1414 AAFFSIRASAFSYEIMCQGRDKLEYYLADYKKRVDTLSKKEQDTLRDMRIVQEMYARGFD 1473

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
             MP  +      DF+V D +I  SL++I G+G   A  +++A  D  F S+EDF +R   
Sbjct: 1474 FMPLDIYRAKARDFQVIDGKIMPSLSSIDGLGDKAAEAVVDAVKDGAFLSIEDFSNR--- 1530

Query: 875  KKLN 878
             K+N
Sbjct: 1531 SKVN 1534



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQP 69
           V L  H+  S ++G   + +I+ +       AIA+TD   + S  +    A   G   + 
Sbjct: 452 VELHCHTKMSDMDGVSEVKDIIKRAKKWGMSAIAVTDHGCVQSFPDA-NHALDKGDTFKV 510

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           I G +  +       + N     F    
Sbjct: 511 IYGVEGYLVDDTKQLVENSRNQSFADTY 538


>gi|238924126|ref|YP_002937642.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
 gi|238875801|gb|ACR75508.1| DNA polymerase III, alpha subunit [Eubacterium rectale ATCC 33656]
          Length = 1510

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 147/911 (16%), Positives = 286/911 (31%), Gaps = 121/911 (13%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F +K    GI         +D  + L  ++            ++L +  +G   L  L
Sbjct: 636  VKFIEKLKDRGIS-------SLDEVNALAKSSVEMIRKMPTYHAIILATCDQGRTNLYRL 688

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +S  ++     +  RI  S   +   +GL++ +   +G + RA      Q    RL+ F 
Sbjct: 689  ISLSHIK-YYNKRPRIPKSEFNKY-RDGLLIGSACEAGELYRAILNGRPQEEITRLVNFY 746

Query: 176  KLFGDRLYVNLQRHR-----GYDRY-----------RESQVVQLAYTHELPLVATNNSLF 219
                   Y+ +Q          D                ++V+L       +VAT +  F
Sbjct: 747  D------YLEIQPLGNNAFMIRDEDSDIASNDDLIDINKRIVKLGEEFGKLVVATCDVHF 800

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            L+ ED     ++MA             +   +           +  +         E   
Sbjct: 801  LNPEDEIYRRIIMA---------GKGFKDADEQAPLYLRTTEEMLKEFEYLGSKKAEEVV 851

Query: 280  RCSFILQVHAPILPRFIEKE-CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
              +             +  + C  + +  +  LR                         +
Sbjct: 852  ITNTNKIADMCERISPVRPDKCPPVIENSDGMLREICYNKANRMYGDPL------PPIVK 905

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RLD ELN I    ++  ++I    +  + ++   VG  RGS   S  A    IT+++PL
Sbjct: 906  ERLDRELNSIISNGYAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFVATMSGITEVNPL 964

Query: 399  RFSLLFERFLNPDRMSMPDFDIDFCQ---DRRDEVIRYVQNKYGHERVAQI--------- 446
              +              P+      +   D  D++          E              
Sbjct: 965  -HAHYLCTHCKYSDFDSPEVQAFSGRGGCDMPDKLCPKCGRPLSKEGFDIPFETFLGFKG 1023

Query: 447  ---ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
                      +        +  ++ + +            A   +   I +    R  R 
Sbjct: 1024 NKEPDIDLNFSGEYQSKAHKYTEVIFGEGQTFKAGTIGTLADKTAFGYIKNYYEERGVRK 1083

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQF 558
             +     +  I Q   G+ R    H  GIV       ++   P+         D+  T F
Sbjct: 1084 RN---CEIDRIVQGCVGVRRTTGQHPGGIVVLPMGEEINTFTPVQHPANDMTVDITTTHF 1140

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
            +   I    L+K D LG    T+++     + Q    VD + IP DD     L      L
Sbjct: 1141 DYHSI-DHNLLKLDILGHDDPTMIR-----MLQDLTGVDPTKIPLDDKAVMSLFQNTSAL 1194

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
            GI   +  G      G+     +  + ++   +P    +++      +G +  +     +
Sbjct: 1195 GIEPEDIDGCPLGALGIPEFGTDFAMGMLLDTKPKEFSDLIRIAGLSHGTDVWLGNAQTL 1254

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEEMDKQKERFISGAS 737
                  T    I     +    +  G    EA  +   + K I  +    Q  ++     
Sbjct: 1255 IEEGTATISTCICTRDDIMTYLISMGLESEEAFNIMEKVRKGIIAKGKCPQWPQWKEDMK 1314

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
             +G+      +  ++      Y F K+HAAAY +++++ A+ K  YP+ + AA  ++   
Sbjct: 1315 AHGVPDWYIWSCEKI-----KYMFPKAHAAAYVMMAWRIAYCKVFYPLAYYAAYFSIRAT 1369

Query: 798  NVEK---------------------------------IKKFCQDARQFNIQIMPPSVNT- 823
                                                   +  Q+        MP  +   
Sbjct: 1370 GFSYELMCQGKDRLENYMKDYKKRKDTLSNKEQDVFKDMRIVQEMYARGFDFMPLDIYRA 1429

Query: 824  PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                F++ D ++  ++ +I G+G   A +I EA+ D PF S +DF  R     ++R  ++
Sbjct: 1430 HPNRFQIIDGKLMPAINSIDGLGDNAAIYISEAAKDGPFLSKDDFRERTH---VSRTAVD 1486

Query: 884  SLVFAGALDCF 894
             +   G L   
Sbjct: 1487 LMSDLGLLGSL 1497



 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 1/86 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++G   + +I+         AIAITD  ++ +  +          + I 
Sbjct: 396 VELHCHTKMSDMDGVSDVKDIVKCAMRWGHKAIAITDHGDVQAFPDA-NHTVDDKFKVIY 454

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +       + N          
Sbjct: 455 GVEAYLVDDTKDIVENAAGQSLDDKY 480


>gi|259503120|ref|ZP_05746022.1| DNA polymerase subunit III [Lactobacillus antri DSM 16041]
 gi|259168986|gb|EEW53481.1| DNA polymerase subunit III [Lactobacillus antri DSM 16041]
          Length = 1444

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 145/894 (16%), Positives = 286/894 (31%), Gaps = 169/894 (18%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++    + N  M             + LL     G + L +LVS   +     +  RI  
Sbjct: 591  EIRYVDELNQHMAENDAYKHARPFHVTLLAQNQAGLKNLFKLVSLSNVR-YFHRVPRIPR 649

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR----- 188
            + L +   EGL++ T  SSG +  A        A +R   +        Y+ +Q      
Sbjct: 650  TVLTKY-REGLLLGTACSSGEVFTAMMEKGYAEALRRARYYD-------YIEIQPRPNYA 701

Query: 189  -----HRGYDR----YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
                 H   DR         +V+L    +  +VAT +  +++  D     +L+       
Sbjct: 702  PLLETHVIADRDQLDDILQNMVKLGAELKKKVVATGDVHYINPHDGIYRRILINSQGG-- 759

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             +  +R +    H+      +         A      +      I  +    +    +K 
Sbjct: 760  ANPLNRTKRPDVHFRTTDEMLEEFS--FLGADTAKRVVVENSHAIADMIDADIRPVKDKL 817

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 K  E E++++     +              +  + R++ ELN I +  FS  +LI
Sbjct: 818  YTPHMKGAEQEIQDRTWNTAKAWYGNPL------PKIVKDRVELELNSIVKNGFSVIYLI 871

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------- 399
                +  + K+   VG  RGS   SV A    IT+++PL                     
Sbjct: 872  AQRLVAKSNKDGYLVG-SRGSVGSSVVATLSGITEVNPLPPHYRCPQCRFAHFYTKGEYS 930

Query: 400  ---------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
                                   + F+ FL      +PD D++F  D +     Y++  +
Sbjct: 931  SGFDLPERKCPKCGALLVKDGHDIPFQTFLGFKGNKVPDIDLNFSGDYQSIAHNYMKVLF 990

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G E V +  T G++  K A   V +A +       R                   ++ R 
Sbjct: 991  GEENVFRAGTIGTVADKTAYGYV-KAFERDNDVQFRGA-----------------EEDRL 1032

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRSD---L 553
                            +Q   G+ R    H AGI+I      +    P+           
Sbjct: 1033 ----------------AQGATGVKRTTGQHPAGIIIVPDDMDIYDFTPVQYPADDQNAAW 1076

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT 613
              T F+   I    ++K D LG    T+++       Q    +D   IP +D     L +
Sbjct: 1077 ETTHFDFHSIHD-NILKMDILGHDDPTMIR-----ALQDLSGIDPKTIPMNDPGVMALFS 1130

Query: 614  TKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
            +   LG+   Q++S      L       +  +   +    P     ++  +   +G    
Sbjct: 1131 SPKILGVTEEQIQSKTGTLGLPEFGTRFVRGM---LDDTHPKNYSQLLQISGLSHGTGVW 1187

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
            +     +      T   +I     +    +  G     +  +   + K      +     
Sbjct: 1188 LDNAQELIKEGTATIANVIGCRDNIMTDLIHYGLDSETSFQVMEHVRKGRGIPDE----- 1242

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            + S   K G+ +    +  ++      Y F ++HAAAY +++ + A+ K ++P+ +  A 
Sbjct: 1243 WQSKMLKVGVPQWYLDSCLKI-----KYMFPRAHAAAYVLMALRIAYFKVYFPLVYYCAF 1297

Query: 792  MTLEMDNVEKIKK---------------------------------FCQDARQFNIQIMP 818
             ++  D+ + +                                      +  +   +   
Sbjct: 1298 FSVRADDFDIVAMAHGKEAVKARMAEISNKGNDASAKEKSLLTILELANEMLERGFKFKM 1357

Query: 819  PSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              +      ++ +  + +     AI G+G + A+ I+ A  ++PF S E+   R
Sbjct: 1358 VDLERSDASNWLIDGDSLIAPFRAIPGLGLSVAKQIVAAREERPFLSKEELADR 1411



 Score = 91.0 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L  H+  S ++   S+  I  + +   QPAIA+TD  N+ +  E  +      ++ I 
Sbjct: 337 IELHTHTEMSQMDATNSITEIAKQASKWGQPAIAVTDHGNVQAFPEAYKAGKKFKLKMIY 396

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       + N+          ++ 
Sbjct: 397 GMEANVVDDGVPLVYNENHAQLKDNTYVIF 426


>gi|168334980|ref|ZP_02693097.1| DNA polymerase III, alpha subunit [Epulopiscium sp. 'N.t. morphotype
            B']
          Length = 1454

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 153/879 (17%), Positives = 286/879 (32%), Gaps = 173/879 (19%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++LV    G   L +LVS  +L D   +  R+  S + +   EGLI+ +   +G +  A 
Sbjct: 629  IILVKNEIGRINLNKLVSASHL-DYFARRPRMPKSLIAQ-HREGLIIGSACEAGEVFSAL 686

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD----------------RYRESQVVQL 203
                S   E  +  +        Y+ +Q     +                     ++VQL
Sbjct: 687  LR-DSNNIESIVDFYD-------YLEIQPTMNNEFMIRSDKHAATSRKDLEDYNKRIVQL 738

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                   +VAT +  FL  ED E +  ++        +    P                 
Sbjct: 739  GEKCGKRVVATCDVHFLDPED-EIYRRILMDYKGFKDADLQPPLYFRTTDEMLDEFSYLG 797

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
             +   +A E  VE     +  ++  +P+LP        D     + ELR           
Sbjct: 798  SA---KAYEVVVENTNAIATQIEKISPVLPDKCPPVIAD----SDKELRKICYDKAHEIY 850

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                       +    RL+ ELN I    ++  ++I    +  +  +   VG  RGS   
Sbjct: 851  GPDL------PEPVTARLERELNSIISNGYAVMYIIAQKLVWDSNDHGYLVG-SRGSVGS 903

Query: 384  SVTAYALTITDIDPLR-----------------------------------------FSL 402
            S  A    IT+++PL                                            +
Sbjct: 904  SFAATMSGITEVNPLAAHYICPQCFYTDFDTNSAGTSGCDIPDRNCPKCQTPLNKEGHDI 963

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE FL       PD D++F  + + +  +YV+  +G  +  +  T G++  K AL  V 
Sbjct: 964  PFETFLGFYGDKEPDIDLNFSGEYQSKAHKYVEVLFGEGKAFRAGTIGTVADKTALMYVF 1023

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            + L                                 R+       + R+   +    G+ 
Sbjct: 1024 KYL-------------------------------EKRQLSKRRAEMRRI---ASGCTGVK 1049

Query: 523  RHASTHAAGIV--IGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKT 578
            R    H  GI+    DR + +   +           +T           L+K D LG   
Sbjct: 1050 RTTGQHPGGIIVVPHDRDIYEFCAVQHPANDVNTPXITTHYEYHSIDHNLLKLDILGHDD 1109

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD 638
             T++++      +    +  + I  D  +   L      LGI   + SG++    G+   
Sbjct: 1110 PTIIRR-----LEDITGISSATIRLDXKDVMALFHGTAVLGIQPADISGIQLGSLGVPEF 1164

Query: 639  CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQI 698
              + +I ++   +P    ++V  +   +G +  +     +    K T   +I        
Sbjct: 1165 GTDFVIQMLLDAKPQNFSDLVRISGLSHGTDVWLGNAQTLIEEGKGTISTVIXTRDDXMT 1224

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
              +  G     A  +  ++ K    + +         A          +   + +     
Sbjct: 1225 YLISMGLEAGTAFTIMESVRKGKGLKPE------WEQAMLEKDVPDWYIWSCKKI----K 1274

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK----------------- 801
            Y F K+HAAAY +++++ AW K  +P+ +  A  ++   +                    
Sbjct: 1275 YMFPKAHAAAYVMMAWRIAWYKVFHPLAYYTAFFSIRASSFNYELMCFGKEKLEANMKAI 1334

Query: 802  -----------------IKKFCQDARQFNIQIMPPSVNTPC-VDFKVGDNRIYYSLAAIK 843
                               +  Q+         P  + T   VDF++ D +I  SL  I 
Sbjct: 1335 TSMPKDKQTAKDQDTLKDMRIVQEMYARGFSFKPIDIFTASDVDFQIIDGQIMPSLGTID 1394

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
            G+G   A  ++EA+ + PF S ++F +R    K+N+ V+
Sbjct: 1395 GMGDKAAAMVVEAAKNGPFLSRDEFKTRT---KVNQTVI 1430



 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQP 69
           V L +H+  S ++  + +  ++ +      PA+AITD   L  A   +          + 
Sbjct: 350 VELHLHTKMSDMDSVVDIKAMIKRAKEWGMPAVAITDHGCLQ-AFPIANHCIEKDDPFKI 408

Query: 70  IIGCQLDIDMQ 80
           I G +      
Sbjct: 409 IYGVEAYFVDD 419


>gi|116333947|ref|YP_795474.1| DNA polymerase III PolC [Lactobacillus brevis ATCC 367]
 gi|122269369|sp|Q03QS9|DPO3_LACBA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116099294|gb|ABJ64443.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus brevis
            ATCC 367]
          Length = 1445

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 150/917 (16%), Positives = 293/917 (31%), Gaps = 173/917 (18%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +    Q N  MT+            +LL  T  G + + +LVS    +D   +  R+  
Sbjct: 593  DIQYHDQLNDHMTDNDAYKHARPNHAILLAKTQAGLKNMFKLVSASN-VDYYYRVPRVPR 651

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR----- 188
            S L+E   EG+I+ +  SSG +  A        A  +   +        Y+ +Q      
Sbjct: 652  SVLEEY-REGIIVGSACSSGEVFTAMMQKGQVEAAAKAKFYD-------YLEVQPSAAYQ 703

Query: 189  ---------HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
                      R         +V+L +    P+VAT +  FL+ +DY    +L+       
Sbjct: 704  PLIDSGLIADRENMEEIVRNMVKLGHDLNKPVVATGDVHFLNPDDYIYRKILIHSQGGA- 762

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                 +          +       +     A E  V   ++ +  +    P+  +     
Sbjct: 763  NPLNRQELPDVHFMTTDEMLTDFAYLGEETAKEIVVTNTQKIADDIDEVHPLKDKLYTPR 822

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +      E+E+R + +                  +  + R+D EL  I    FS  +LI
Sbjct: 823  MEG----AEDEIRQRTMDTAHAMYGDPL------PELVQHRVDRELKSIIGNGFSVIYLI 872

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------- 399
                +  + K+   VG  RGS   S+ A    IT+++PL                     
Sbjct: 873  AQRLVAKSNKDGYLVG-SRGSVGSSLVATLTGITEVNPLPPHYRCPKCQYSHFYTKGEYS 931

Query: 400  ---------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
                                  ++ FE FL      +PD D++F  D +     Y +  +
Sbjct: 932  SGYDLPEKDCPECGTLMIGDGHNIPFETFLGFKGNKVPDIDLNFSGDYQPIAHNYTKVLF 991

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G + V +  T G++  K A   V +A +    Q  R  +                     
Sbjct: 992  GEKNVYRAGTIGTVADKTAYGYV-KAYERDTEQTFRGAE--------------------- 1029

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRSD---L 553
                        +  +++   G+ R    H AGI  V     +    P+           
Sbjct: 1030 ------------IDRLAKGATGVKRTTGQHPAGIIVVPDYMDIFDFTPIQYPADDQSAAW 1077

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT 613
              T F+   I    ++K D LG    T+++       Q    VD + IP DD     L +
Sbjct: 1078 QTTHFDFHSIHD-NILKIDILGHDDPTMIRT-----LQDLSGVDPTTIPMDDPGVMGLFS 1131

Query: 614  TKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
               +LG+   Q++S      +       +  ++       P     ++  +   +G +  
Sbjct: 1132 GTDSLGVTPEQIQSKTGTLGVPEFGTRFVRGMLEET---HPQNYSQLLQISGLSHGTDVW 1188

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
            +     +      T   +I     +    +  G     +  +   + K      +     
Sbjct: 1189 LGNAEELIKNGTATIANVIGCRDNIMTDLINFGLDSETSFQVMEHVRKGRGIPDE----- 1243

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +               +  ++      Y F ++HAAAY +++ + A+ K ++P+ + AA 
Sbjct: 1244 WQEKMKATDCPDWYIDSCLKI-----KYMFPRAHAAAYVLMALRVAYFKVYFPIIYYAAY 1298

Query: 792  MTLEMDNVEKIKK---------------------------------FCQDARQFNIQIMP 818
             ++  D+ + +                                      +  +   +   
Sbjct: 1299 FSVRADDFDVVAMSQGKTAVKAAMKAINDQGMDASAKDKNLLTVLELANEMLERGFKFKM 1358

Query: 819  PSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
              +      D+ +  + +     A  G+G   A+ I+ A  D+PF S ED   R    K+
Sbjct: 1359 IDLEKSDAADWIIDGDTLIAPFKAAPGLGLNVAKQIVAARNDRPFISKEDLAKR---GKV 1415

Query: 878  NRRVLESLVFAGALDCF 894
            ++ +++ +   G L   
Sbjct: 1416 SKTLIDFMTENGVLAGL 1432



 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+S S ++   S+ + + +      PA+AITD  ++         A  AGI+ + 
Sbjct: 339 VELHLHTSMSQMDATNSIGDYVKQAKKWGMPALAITDHADVQGFPAAFNSAAKAGIKMLY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N    P      +V 
Sbjct: 399 GVEANLVDDGVPIGYNSAHVPLDGATYVVF 428


>gi|239626437|ref|ZP_04669468.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516583|gb|EEQ56449.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1554

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 150/901 (16%), Positives = 276/901 (30%), Gaps = 172/901 (19%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            D++  + +   +           +++L     G   L  LVS  +L +   +  RI  S 
Sbjct: 700  DLEALNGMSTMDTNTIRKLPTYHVIILAKNDIGRVNLYRLVSWSHL-EYYARRPRIPKSI 758

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY--- 192
            L +   EGLI+ +   +G + +A    +      RL+ F        Y+ +Q        
Sbjct: 759  LDKY-REGLIIGSACEAGELYQALLRGAPDAEIARLVNFYD------YLEIQPLGNNSFM 811

Query: 193  --DR-----------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              D                ++V+L       + AT +  FL  +D E +  ++       
Sbjct: 812  LRDEKSTVKSEADLIEINKKIVELGMQFNKLVCATCDVHFLDPQD-EVYRRIIMAGQGFK 870

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             S    P          +           +A E  V   R+ + + +  AP+ P      
Sbjct: 871  DSDDQAPLYLRTTEEMIKEFSYLG---PDKAHEVVVTNTRKVADMCEKIAPVRPDKCPPV 927

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +D  K     L             +         +    RL+ EL+ I    F+  ++I
Sbjct: 928  IEDSDKT----LTKICYDRAHEMYGENL------PKIVVDRLERELHSIITNGFAVMYII 977

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------- 399
                +  + ++   VG  RGS   S  A    IT+++PL                     
Sbjct: 978  AQKLVWKSNEDGYLVG-SRGSVGSSFVATMSGITEVNPLSPHYHCPNCRYYDFDSEEVRK 1036

Query: 400  -------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                     F + FE FL       PD D++F  + + +   Y 
Sbjct: 1037 FSGMAGCDMPDKSCPVCGTPLEKDGFDIPFETFLGFKGDKEPDIDLNFSGEYQSKAHDYT 1096

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            +  +G  +  +  T G+L  K A   V +  +                            
Sbjct: 1097 EVIFGKGQTFRAGTIGTLADKTAFGYVKKYYE---------------------------- 1128

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRSD 552
                   R        +  I Q   G+ R    H  GI++      +    P+       
Sbjct: 1129 ------ERGTRKRNCEINRIVQGCVGVRRTTGQHPGGIIVLPLGEEIYSFTPVQHPANDM 1182

Query: 553  LP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
                VT           L+K D LG    T+++   D +        +  IP D  E   
Sbjct: 1183 TTSTVTTHFDYHSIDHNLLKLDILGHDDPTMIRMLQDLI----GIDPVKDIPLDSREVMS 1238

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L      LGI   +  G         P+   D    + L       + +V          
Sbjct: 1239 LFQDTSALGILP-DDIGGCPLGALGVPEFGTDFAMQMLLDTKPKYFSDLVRIAGLAHGTD 1297

Query: 671  IVSIH-PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +   +   +    K T    I     + +  +  G     +  +  ++ K    + +   
Sbjct: 1298 VWLGNAQTLIQEGKATIQTAICTRDDIMVYLIAQGLEEGLSFTIMESVRKGKGLKPE--- 1354

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              +    + +G+      +  ++      Y F K+HAAAY +++++ A+ K  YP+ + A
Sbjct: 1355 --WEEEMTAHGVPDWYIWSCKKI-----KYMFPKAHAAAYVMMAWRIAYCKIFYPLAYYA 1407

Query: 790  ASMTLEMDNVEK---------------------------------IKKFCQDARQFNIQI 816
            A  ++                                          +  Q+        
Sbjct: 1408 AFFSIRASAFSYEIMCQGRDKLEYYLADYKKRADTLSKKEQDTLRDMRIVQEMYARGYDF 1467

Query: 817  MPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            MP  +       F++ D ++  SL++I G+G   A  +++A  D  F S+EDF SR    
Sbjct: 1468 MPLDIYRAKARHFQIIDGKLMPSLSSIDGLGEKAADAVVDAVKDGIFLSIEDFSSRAKVN 1527

Query: 876  K 876
             
Sbjct: 1528 G 1528



 Score = 79.4 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQP 69
           + L  H+  S ++G   + +I+ +      PAIA+TD   + +  +    A   G   + 
Sbjct: 445 IELHCHTKMSDMDGVSEVKSIIKRAKQWGMPAIAVTDHGCVQAFPDA-NHALDKGDTFKI 503

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           I G +  +       + N G   F    
Sbjct: 504 IYGVEGYLVDDTKQLVENPGGQGFEDTF 531


>gi|220931624|ref|YP_002508532.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168]
 gi|219992934|gb|ACL69537.1| DNA polymerase III, alpha subunit [Halothermothrix orenii H 168]
          Length = 1397

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 154/953 (16%), Positives = 304/953 (31%), Gaps = 208/953 (21%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            + F       GI+ + G           +++ +           V+     +G + +  L
Sbjct: 542  INFLSNIKNEGIETVPGI---------NRLSTKINWRELPTYHTVIFAKNKQGLKDIYRL 592

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS-SQVAEKRLLTF 174
            VS  +L +   +  RI  S L +   + LI+ +   +G + R+   N   +   K    +
Sbjct: 593  VSESHL-NYFYRKPRILKSHLIQC-RKNLIIGSACEAGQLYRSIINNKPYREIIKIASFY 650

Query: 175  KKLFGDRLYVNLQRHR-------------GYDRYRESQVVQLAYTHELPLVATNNSLFLS 221
                    Y+ +Q                        Q+ +L      P+VAT +  FL 
Sbjct: 651  D-------YLEIQPTGNNKFLVGNKVESIDELEKINYQIYKLGKKLNKPVVATCDVHFLD 703

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
             ED     VL A         +   +        N       +     A E  +E   + 
Sbjct: 704  PEDDIYRKVLQAGQ----GYDEAEEQAPLYFRTTNEMLEEFSYLGKKAAREVVIENPAKI 759

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            S  ++   P+       E +       +++R                          +RL
Sbjct: 760  SDQIEELKPLPDGLFAPEIEG----ANDQIRKMTYQRAHELYGDPL------PSIIEERL 809

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-- 399
            + EL  I    ++  +LI    ++ + ++   VG  RGS   S+ A    IT+++PL   
Sbjct: 810  EKELKAIIDNGYAVIYLISHKLVKKSLEDGYLVG-SRGSVGSSLVATMCEITEVNPLPPH 868

Query: 400  ---------------------------------------FSLLFERFLNPDRMSMPDFDI 420
                                                   F + FE F+  +   +PD D+
Sbjct: 869  YRCPRCKQVEFVNDENTGVGADLPDKNCPHCGTRYVKDGFDIPFEVFMGFEGDKVPDIDL 928

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  + + E+ +Y +  +G   V +  T  ++  + A           +  V        
Sbjct: 929  NFSGEYQGEIHKYTEELFGSNYVFRAGTISTIAKRTA-----------FGFVKGYLDDNG 977

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG--IVIGDRP 538
                                          +  + +   G+ R    H  G  +V     
Sbjct: 978  LRLNK-----------------------AEIDRLVKGCTGVKRTTGQHPGGLMVVPKAYD 1014

Query: 539  LSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
            +    P+ R         +T           ++K D LG    T ++     + Q    V
Sbjct: 1015 IHDFSPIQRPANDQETDVITTHFDYHSISGRILKLDLLGHDDPTTIR-----MLQDLTGV 1069

Query: 597  DLSLIPFDDHETYHLLTTKGTLG--------------IFQLESSGMRQALEGMQPDCIED 642
            +   IP DD +T  + ++   LG              I +  +S +RQ L   +P    +
Sbjct: 1070 NPHDIPLDDPDTMDIFSSTDPLGVSPEEIGTVVGTLGIPEFGTSFVRQMLVDTRPTTFAE 1129

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            ++ +  L                N ++ I S    +  ++     ++ Y  Q        
Sbjct: 1130 LVRISGLSHG-------TDVWLNNAQDLIKSGKARLSEVISVRDDIMNYLIQ-------- 1174

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
             G    ++  +   + K      +++         ++ +      +  ++      Y F 
Sbjct: 1175 KGLEPGKSFWIMEHVRKGKGLTEEEE-----QYMREHNVPDWYIESCKKI-----KYMFP 1224

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK------------------ 804
            K+HAAAY +++++ A+ K HYP  F     T++ D+ +                      
Sbjct: 1225 KAHAAAYVMMAFRIAYFKVHYPEAFYTTYFTIKADDFDAHMINQGYDHIIEVKKNLEARG 1284

Query: 805  ---------------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTT 848
                              +A    I+ +P  +       FK+ D  +   L +++G+G++
Sbjct: 1285 NDMTAKEKGILTVLEIVIEAMARGIEFLPVDLYKSDATKFKLTDKGLLPPLVSLQGLGSS 1344

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             A  I     + PF S+ED  +R    ++++ V+E L   G+LD     R QL
Sbjct: 1345 AAEKIAVTRQEAPFSSVEDLVNRT---RISKTVVEILEEHGSLDGL-PERDQL 1393



 Score = 92.9 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L +H+  S L+  + +  ++++ A     AIAITD   + +  +  Q      I+ + 
Sbjct: 299 IELHLHTKMSALDSVVDVEKVIERAAEWGHSAIAITDHGVVQAYPDAYQAGKKHNIKILY 358

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G +  +       + N       +   +V 
Sbjct: 359 GLEAYMVDDGEPIILNPPDVSLESATFVVF 388


>gi|258611758|ref|ZP_05711628.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503]
 gi|258605945|gb|EEW18553.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-503]
          Length = 1144

 Score =  210 bits (534), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 154/918 (16%), Positives = 286/918 (31%), Gaps = 177/918 (19%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            +D     N  M               +   TA G + L +L++   + +   +  RI  S
Sbjct: 297  IDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYFYRVPRIPRS 355

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NLQ 187
             L+++  EGLI+ T  S G +  A      Q AEK    +   ++    +Y       L 
Sbjct: 356  QLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIERELV 414

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R           +V++      P+VAT N  +      + +  ++  +            
Sbjct: 415  RDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP-VDKIYRKILIHSQGGANPLNRAEL 473

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                    +       F    +A E  V  A      ++   PI       + D      
Sbjct: 474  PDVHFRTTDEMLKEFAFLGEEKAKEIVVTNANLVVDWMEDLKPIKDELYTPKIDG----A 529

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+E+RN + A       +         +    RL+ EL  I    F+  +LI    ++ +
Sbjct: 530  EDEVRNMSYAMAHQLYGE------KLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKS 583

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
              +   VG  RGS   S  A    IT+++PL                             
Sbjct: 584  LVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDGSVGSGFDLPDK 642

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  D +     Y +  +G + V + 
Sbjct: 643  DCPHCGTPYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFRA 702

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V R  +   +   R  +                             
Sbjct: 703  GTIGTVAEKTAFGYV-RNYERDMNMTIRGAE----------------------------- 732

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVR---SDLPVTQFNMK 561
                +  +     G+ R    H  GI+       +    P+        S+   T F+  
Sbjct: 733  ----IDRLVAGCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATDSEWKTTHFDFH 788

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY-----------H 610
             I    ++K D LG    T ++   D          +     D  + +            
Sbjct: 789  SIHD-NVLKLDILGHDDPTAIRMLQDLSG--IDPKTIPTDDPDVMKLFGSTESLGVKPAD 845

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            + +  GTLGI +  +  +RQ LE  +P    +++ +  L                N +E 
Sbjct: 846  IDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG-------TDVWLGNAEEL 898

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            I +    +  ++     ++++         +  G   S A  +  ++ K      + ++ 
Sbjct: 899  IKNKTCELPDVIGCRDDIMVFL--------IYQGLESSLAFKIMESVRKGKGLTEEMEEA 950

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
               +               +    K   Y F K+HAAAY +++ + A+ K HYP+ F A 
Sbjct: 951  MMANK----------VPLWYIESCKKIKYMFPKAHAAAYVLMAVRIAYFKVHYPLYFYAT 1000

Query: 791  SMTLEMDNVEKIKK---------------------------------FCQDARQFNIQIM 817
              T+  D+ +                                        +         
Sbjct: 1001 YFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHFQ 1060

Query: 818  PPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
               +     D F +  + +     AI  +GT  A+ I+ A  +  F S ED   R    K
Sbjct: 1061 KVDLYKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQR---GK 1117

Query: 877  LNRRVLESLVFAGALDCF 894
            +++ +++ +   G L+  
Sbjct: 1118 VSKTIIQYMDDQGCLEGL 1135



 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 42  AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 101

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G + ++         N          
Sbjct: 102 GIEANLIDDGVPIAYNDQHIALEDAT 127


>gi|313608987|gb|EFR84729.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            monocytogenes FSL F2-208]
          Length = 1447

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 151/919 (16%), Positives = 285/919 (31%), Gaps = 177/919 (19%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +D     N  M               +   TA G + L +L++   + +   +  RI  
Sbjct: 599  DIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYFYRVPRIPR 657

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NL 186
            S L+++  EGLI+ T  S G +  A      Q AEK    +   ++    +Y       L
Sbjct: 658  SQLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIEREL 716

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R           +V++      P+VAT N  +      + +  ++  +           
Sbjct: 717  VRDETALEEILKNIVRVGEKTGKPVVATGNVHYKDP-VDKIYRKILIHSQGGANPLNRAE 775

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                     +       F    +A E  V  +      ++   PI       + D     
Sbjct: 776  LPDVHFRTTDEMLKEFAFLGEEKAKEIVVTNSNLVVDWMEDLKPIKDELYTPKIDG---- 831

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+E+RN +         +         +    RL+ EL  I    F+  +LI    ++ 
Sbjct: 832  AEDEVRNMSYEMAHQLYGENL------PEIVEARLEKELKSIIGHGFAVIYLISHKLVKK 885

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            +  +   VG  RGS   S  A    IT+++PL                            
Sbjct: 886  SLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDGSVGSGFDLPD 944

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL      +PD D++F  D +     Y +  +G + V +
Sbjct: 945  KDCPHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFR 1004

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V R  +   +   R  +                            
Sbjct: 1005 AGTIGTVAEKTAFGYV-RNYERDMNMTIRGAE---------------------------- 1035

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVR---SDLPVTQFNM 560
                 +  +     G+ R    H  GI+       +    P+        S+   T F+ 
Sbjct: 1036 -----IDRLVAGCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATDSEWKTTHFDF 1090

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY----------- 609
              I    ++K D LG    T ++   D          +     D  + +           
Sbjct: 1091 HSIHD-NVLKLDILGHDDPTAIRMLQDLSG--IDPKTIPTDDPDVMKLFGSTESLGVKPA 1147

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             + +  GTLGI +  +  +RQ LE  +P    +++ +  L                N +E
Sbjct: 1148 DIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG-------TDVWLGNAEE 1200

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I +    +  ++     ++++         +  G   S A  +  ++ K      + ++
Sbjct: 1201 LIKNKTCELPDVIGCRDDIMVFL--------IYQGLESSLAFKIMESVRKGKGLTDEMEE 1252

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
                +               +    K   Y F K+HAAAY +++ + A+ K H+P+ F A
Sbjct: 1253 AMMANK----------VPLWYIESCKKIKYMFPKAHAAAYVLMAVRIAYFKVHHPLFFYA 1302

Query: 790  ASMTLEMDNVEKIKK---------------------------------FCQDARQFNIQI 816
               T+  D+ +                                        +        
Sbjct: 1303 TYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHF 1362

Query: 817  MPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +     D F +  + +     AI  +GT  A+ I+ A  +  F S ED   R    
Sbjct: 1363 QKVDLYKSSADEFLIDGDSLIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQR---G 1419

Query: 876  KLNRRVLESLVFAGALDCF 894
            K+++ +++ +   G L+  
Sbjct: 1420 KVSKTIIQYMDDQGCLEGL 1438



 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 345 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 404

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G + ++         N          
Sbjct: 405 GIEANLIDDGVPIAYNDQHIALQDAT 430


>gi|317132568|ref|YP_004091882.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense YUAN-3]
 gi|315470547|gb|ADU27151.1| DNA polymerase III, alpha subunit [Ethanoligenens harbinense YUAN-3]
          Length = 1457

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 154/917 (16%), Positives = 296/917 (32%), Gaps = 185/917 (20%)

Query: 80   QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEI 139
            +D   +T  G          +LLV  + G + L +L+S+  L    K   R+  S L  +
Sbjct: 615  KDINGVTTGGDVRRLPSYHQILLVKNSTGLKNLYKLISKSQLDYYFKH-PRVPRSELSRL 673

Query: 140  GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR----------- 188
              EGL++ +   +G +  A          K++  F        Y+ +Q            
Sbjct: 674  -REGLLVGSACEAGELFHAILEGKPWEELKQIAAFYD------YLEIQPLCNNSFLVREG 726

Query: 189  --HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
               +         +++L     LP+VAT ++ F+ E D     +LM     + +  KD  
Sbjct: 727  KATQAQLEEFNRMILRLGDELHLPVVATCDAHFIDERDGVFRQILM-----SGMGFKDTD 781

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
               P ++      +         A E  VE   + + +++     +P+       D    
Sbjct: 782  EQPPLYFRTTGEMLKEFAYLGERAQEVVVENPNKIADMVEDDIRPIPKGTYPPSLDG--- 838

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             +++L             +         +   +RL  E++ I +  FS  ++I    +  
Sbjct: 839  ADDDLTRIVWGRAHDMYGENL------PEIVEKRLAREMDSIIKHGFSVLYMIAQKLVAK 892

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            ++ +   VG  RGS   S  A    IT+++PL                            
Sbjct: 893  SESDGYLVG-SRGSVGSSFVATMSGITEVNPLPPHYVCPKCKHSEFITDGSVGSGFDLPA 951

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL  D    PD D++F  D +    +Y +  +G   V +
Sbjct: 952  KTCPVCGEPLWRDGHDIPFETFLGFDGDKSPDIDLNFSGDEQPTAHKYTEELFGKGHVFR 1011

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T  S+  K A   V +                  +    +     A+++R        
Sbjct: 1012 AGTISSVAEKTAYGFVKK---------------YLEEKGKTL---HKAEEARL------- 1046

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNM 560
                     +    G+ R    H  G+++      +    P+         D   T F+ 
Sbjct: 1047 ---------ALGCTGVRRTTGQHPGGMIVVPRDYDVYDFTPVQHPADDTSSDTITTHFDF 1097

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHET---------YHL 611
              +    ++K D LG    TL ++  +   +  + V +      +  T           +
Sbjct: 1098 NCLHDT-ILKLDILGHDVPTLYKRLEELTDKPVMSVPVPDPKVLELFTSTAPLGVRPEDI 1156

Query: 612  LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
             +  GT  + +L +  +R  L   QP    D++ +  L          V+ N        
Sbjct: 1157 DSETGTFSLPELGTKFVRGMLVESQPKTFSDLLQISGLSH-----GTDVWLNNAQ----- 1206

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
                  +          +I     +    L  G     A  +   + K    +     + 
Sbjct: 1207 -----ELIRNGTCDISEVIGTRDNIMTYLLHKGLKPKSAFKIMEIVRKGRAPK--LLTDD 1259

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +I    ++G+      +  ++      Y F K+HAAAY + + +  W K + P+E+  A 
Sbjct: 1260 YIQEMKEHGVPDWYIDSCMKI-----KYMFPKAHAAAYVIAALRLGWYKVYMPLEYYCAY 1314

Query: 792  MTLEMDNVEKIKK---------------------------------FCQDARQFNIQIMP 818
            +++   + +                                       ++     I  + 
Sbjct: 1315 LSVRGGDFDAEIMTRGVERVVDKMKEIAQKGRDATQKESDMHAMLEIVREIYARGIPFLT 1374

Query: 819  PSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
              +     V F   + +I   L ++KG+G + AR I  A     F S+E+  SR      
Sbjct: 1375 VDIYRSDPVRFLPQEGKIRPPLTSVKGLGESVARSIAAAREQGKFLSMEELQSR---GGA 1431

Query: 878  NRRVLESLVFAGALDCF 894
            ++ V+ESL   GAL   
Sbjct: 1432 SKTVVESLESFGALAGM 1448



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 5/91 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF---SQKACAAG-- 66
           V L +H++ S ++        + + A     AIAITD     +  E     +     G  
Sbjct: 353 VELHLHTNMSAMDAVTPAAAYIKRAARWGHKAIAITDHGVAQAFPEAMNTVEAIRKDGGE 412

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           I+ I G +                 PF    
Sbjct: 413 IKVIYGIEAYFVDDTVPATVGGANMPFSGEF 443


>gi|237744035|ref|ZP_04574516.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
 gi|229431264|gb|EEO41476.1| DNA polymerase III alpha subunit [Fusobacterium sp. 7_1]
          Length = 1449

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 155/894 (17%), Positives = 308/894 (34%), Gaps = 157/894 (17%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS-----G 153
            +++LV T  G + +  LVS  ++   G +  RI  S L E   EGLI+ +  ++     G
Sbjct: 612  VMVLVKTQAGLKNMYRLVSEAHIKYFGNKKARIPKSVLIE-NREGLIIGSSLTAHFMNTG 670

Query: 154  PIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYVNLQ------RHRGYDR--YRESQVVQL 203
             +   +  +  +  E+    +   +L     Y  L           Y+           L
Sbjct: 671  ELADLYLRHDLEKLEEAAKFYDYIELLPKSTYNELIEKDGTGALGSYEEVEKMNKYFYDL 730

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                 + + A++N  +L E +     +L+  +    V    +  +    Y +   EM+  
Sbjct: 731  GKRLGILVTASSNVHYLDENEDIIRSILLYGSG--TVYNSRQYSINNGFYFRTTDEMLKE 788

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            FS L E     V +    + I  +    +    E       +  E  +++          
Sbjct: 789  FSYLGEDEAKEV-VITNTNKIADMIESGIRPIPEGFYPPKMENAEEIVKSMTYEKAYRIY 847

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                       +    RL+ ELN I    FS  +L     ++ +  N   VG  RGS   
Sbjct: 848  GNPL------PEIVSARLERELNAIINNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGS 900

Query: 384  SVTAYALTITDIDPLR-----------------------------------------FSL 402
            S+ A+ + IT+++ L                                          +S+
Sbjct: 901  SLVAFMMGITEVNALYPHYICDNPECKYSEFIEKEGVGIDLPDKICPKCGAKLRKDGYSI 960

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE F+      +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V 
Sbjct: 961  PFEVFMGFKGDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAEAYVR 1020

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            +                              +D+     R     + RL + ++K     
Sbjct: 1021 K----------------------------YFEDNNLNAVRAEIIRLGRLCQGAKKTT--- 1049

Query: 523  RHASTHAAGIVIGDR--PLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLK 577
                 H  G+VI  +   + +  P+ R    +      T ++   +++  L+K D LG  
Sbjct: 1050 ---GQHPGGMVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDE-QLVKLDILGHD 1105

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGM 635
              T ++     L Q    +++  IP  D ET  + ++  +LG+   Q+ +      +   
Sbjct: 1106 DPTTIK-----LLQEYTNMEIKDIPLADKETLKIFSSTESLGVTPEQIGTEIGTYGIPEF 1160

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
                +  +   +   RP     +V  +   +G    ++         + T   II     
Sbjct: 1161 GTGFVRQM---LIDTRPTTFAELVRISGLSHGTNVWLNNAQEFVRNGQATLSQIITVRDD 1217

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            +    +  G   S+A  +   + K   ++  +  E++ +   +  +      +   +   
Sbjct: 1218 IMNYLIDQGLDNSDAFKIMEFVRKGKPKKEPENWEKYSAMMKEKNVPDWYIESCRRI--- 1274

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK-------------- 801
              +Y F K HA AY +++ + A+ K H P+ F AA ++ + D+ +               
Sbjct: 1275 --EYMFPKGHAVAYVMMAMRIAYFKVHQPLAFYAAFLSRKADDFDMEFMSRGILAKQKLE 1332

Query: 802  -----------------IKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIK 843
                             I +   +     I+++P  +       F + D +I   L  I 
Sbjct: 1333 ELSKEPKLDPKKKNEQAICEIVVEMEARGIELLPVDIYLSDGKKFTIEDGKIRIPLIGIN 1392

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            G+G      I++   +  F S+ED   R   ++    V++ L   GA+     +
Sbjct: 1393 GLGGAVIDAIVKEREEGKFISVEDLKRRTKMQQ---PVVDKLKNIGAISSLSET 1443



 Score = 79.4 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
           V L VH+  S + G   + +I+ +       AIAITD   + S     + A         
Sbjct: 331 VELHVHTKMSEMVGVTDVEDIIKRAKEYGHKAIAITDYAVVHSYPAAFKTAKKLSTDEEK 390

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           ++ I GC++ +   +   +TN           +V 
Sbjct: 391 MKAIFGCEMYMIDDEAPMVTNPKDKKIDDEEFVVF 425


>gi|217964533|ref|YP_002350211.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            monocytogenes HCC23]
 gi|217333803|gb|ACK39597.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            monocytogenes HCC23]
 gi|307570901|emb|CAR84080.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
            monocytogenes L99]
          Length = 1443

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 151/919 (16%), Positives = 285/919 (31%), Gaps = 177/919 (19%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +D     N  M               +   TA G + L +L++   + +   +  RI  
Sbjct: 595  DIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYFYRVPRIPR 653

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NL 186
            S L+++  EGLI+ T  S G +  A      Q AEK    +   ++    +Y       L
Sbjct: 654  SQLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIEREL 712

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R           +V++      P+VAT N  +      + +  ++  +           
Sbjct: 713  VRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP-VDKIYRKILIHSQGGANPLNRAE 771

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                     +       F    +A E  V  +      ++   PI       + D     
Sbjct: 772  LPDVHFRTTDEMLKEFAFLGEEKAKEIVVTNSNLVVDWMEDLKPIKDELYTPKIDG---- 827

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+E+RN +         +         +    RL+ EL  I    F+  +LI    ++ 
Sbjct: 828  AEDEVRNMSYEMAHQLYGENL------PEIVEARLEKELKSIIGHGFAVIYLISHKLVKK 881

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            +  +   VG  RGS   S  A    IT+++PL                            
Sbjct: 882  SLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDGSVGSGFDLPD 940

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL      +PD D++F  D +     Y +  +G + V +
Sbjct: 941  KDCPHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFR 1000

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V R  +   +   R  +                            
Sbjct: 1001 AGTIGTVAEKTAFGYV-RNYERDMNMTIRGAE---------------------------- 1031

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVR---SDLPVTQFNM 560
                 +  +     G+ R    H  GI+       +    P+        S+   T F+ 
Sbjct: 1032 -----IDRLVAGCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATDSEWKTTHFDF 1086

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY----------- 609
              I    ++K D LG    T ++   D          +     D  + +           
Sbjct: 1087 HSIHD-NVLKLDILGHDDPTAIRMLQDLSG--IDPKTIPTDDPDVMKLFGSTESLGVKPA 1143

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             + +  GTLGI +  +  +RQ LE  +P    +++ +  L                N +E
Sbjct: 1144 DIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG-------TDVWLGNAEE 1196

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I +    +  ++     ++++         +  G   S A  +  ++ K      + ++
Sbjct: 1197 LIKNKTCELPDVIGCRDDIMVFL--------IYQGLESSLAFKIMESVRKGKGLTDEMEE 1248

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
                +               +    K   Y F K+HAAAY +++ + A+ K H+P+ F A
Sbjct: 1249 AMMANK----------VPLWYIESCKKIKYMFPKAHAAAYVLMAVRIAYFKVHHPLFFYA 1298

Query: 790  ASMTLEMDNVEKIKK---------------------------------FCQDARQFNIQI 816
               T+  D+ +                                        +        
Sbjct: 1299 TYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHF 1358

Query: 817  MPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +     D F +  + +     AI  +GT  A+ I+ A  +  F S ED   R    
Sbjct: 1359 QKVDLYKSSADEFLIDGDSLIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQR---G 1415

Query: 876  KLNRRVLESLVFAGALDCF 894
            K+++ +++ +   G L+  
Sbjct: 1416 KVSKTIIQYMDDQGCLEGL 1434



 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 341 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G + ++         N          
Sbjct: 401 GIEANLIDDGVPIAYNDQHIALQDAT 426


>gi|331014281|gb|EGH94337.1| error-prone DNA polymerase [Pseudomonas syringae pv. lachrymans str.
            M302278PT]
          Length = 307

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 91/273 (33%), Gaps = 30/273 (10%)

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
            +A+++Y + W+K H P  F  A +           +  QDAR+ +I+I P  V     D 
Sbjct: 1    FALLTYASCWLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSHWDC 60

Query: 829  KVG---------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
             +          +  I   L  ++      A  I  A + +PF    D   R     L+ 
Sbjct: 61   TLEPLDHPDSTRNLAIRLGLRMLRSFREEDALRIEAARSKRPFADATDLAQRA---GLDS 117

Query: 880  RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
            R  E+L  +GAL      R +    +  +                 +F            
Sbjct: 118  RAAEALADSGALRGLIGHRHRARWEVAGV------------EAQRPLFDDVTSEEVQ--- 162

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
                 +   +     +   LG     HPL + +  L     +  ++ +       + +A 
Sbjct: 163  -VTLPLPTVAEDLVADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLTLENNRTLSVAG 221

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +V+ +Q+  T  G  + +VT  +         +
Sbjct: 222  LVIGRQRPGTASG--VTFVTLEDEFGMVNVVVW 252


>gi|313115651|ref|ZP_07801107.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii
            KLE1255]
 gi|310622037|gb|EFQ05536.1| DNA polymerase III, alpha subunit [Faecalibacterium cf. prausnitzii
            KLE1255]
          Length = 1417

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 152/943 (16%), Positives = 311/943 (32%), Gaps = 173/943 (18%)

Query: 55   ALEFSQKACA-AGIQPIIGCQLD------ID--MQDNLKMTNQGKTPFPTVPSIVLLVST 105
            A E  +     A +  I G  L+      +    + N  +    +        +++LV  
Sbjct: 536  AYEAHRACEDSAALGRIFGVMLNDLKEKQVAKVSEINTGLGGNREVLKKKYYHLIILVKN 595

Query: 106  AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
              G + L ++VS  + ++   +  R+  S L +   +GL++ +   +G + RA    +S 
Sbjct: 596  QMGLKNLYKIVSEAH-VNYFFKKPRVPRSLLNKY-RDGLLLTSACEAGELYRAIVDGTSY 653

Query: 166  VAEKRLLTFKKLF-----GDRLYVNLQRHRGYDRY-----RESQVVQLAYTHELPLVATN 215
               K++ ++  +      G+  Y+   R    D           V++L      P++AT 
Sbjct: 654  EELKKIASYYDILEIQPLGNNAYM--VRDGKVDSEEDIKNFNRTVIKLGEDLHKPVIATG 711

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +  F   ED  A+  ++   +    +    P                      +A E  V
Sbjct: 712  DVHFTEPEDA-AYRAVLQAGNGFKDADNQPPLFFRTTQDMLAQFYYLPKE---KAYEVVV 767

Query: 276  EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
            +  R+ + ++  +   +PR          +  E +LR+      +              +
Sbjct: 768  KNPRKIAAMIDNNVRAIPRGTYP---PSIEGAEQQLRDATWEHAKRDYGDPL------PE 818

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
               +RL  EL+ I    ++  ++I    + ++      VG  RGS   S  A+   I+++
Sbjct: 819  IVEKRLQKELDSICGHGYAVLYVIAVKLVAYSNAGGYQVG-SRGSVGSSAVAHFSGISEV 877

Query: 396  DPLR-----------------------------------------FSLLFERFLNPDRMS 414
            + L                                            + FE FL      
Sbjct: 878  NSLPPHYRCPKCKHSEFITDGSVDDGFDLPDKNCPNCGTRMLVDGHDIPFETFLGFYGDK 937

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D++F  + +  V RY +  +G   V +  T   +Q K A   V + L         
Sbjct: 938  EPDIDLNFSGEYQSNVHRYTEELFGKANVFKAGTVSGIQDKTAYGYVKKYLD-------- 989

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
                   +    V+    A+++R                 +    G+ R    H  G+V+
Sbjct: 990  -------ERGRTVNH---AEENRL----------------TLGCTGVKRTTGQHPGGMVV 1023

Query: 535  GD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
                  +    P+          L  T F  K++    L+K D LG    T  +      
Sbjct: 1024 VPDTYEIYDFCPIQHPADDVAGGLLTTHFEFKYLHDT-LLKLDELGHDMPTFYKYF---- 1078

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALV 647
             +    + +  IP +D + Y LLT+   LG+   Q++S      +  M  + +  +   +
Sbjct: 1079 -EEYTGIPIDSIPMNDPKVYSLLTSPEALGVTPEQIDSQTGTFGIPEMGTNFVRGM---L 1134

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
               RP     ++  +   +G +        +      T   +I     + +  L  G   
Sbjct: 1135 VEARPKNFSELIQISGLSHGTDVWTGNADELIRSGTCTIAEVIGCRDSIMLYLLRKGLEP 1194

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              A  +  A+ K  K      K+ +     ++ +      +  ++      Y F K+HA 
Sbjct: 1195 KMAFDIMEAVRKG-KVAKGGFKDGWEEAMREHEVPDWYIESCRKI-----KYMFPKAHAV 1248

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------------------ 803
            AY + + +  W K + P EF A   T+  D+++                           
Sbjct: 1249 AYLMSAIRLMWFKIYRPPEFYAVYFTVRGDDIDYEAAVGGAAVARAHMEEVKRRLKEEKN 1308

Query: 804  ----------KFCQDARQFNIQIMPPSVNTPC-VDFKVGDNRIYYSLAAIKGVGTTTARH 852
                      +   +      + +P  +       + V D ++    +++KG+G   A  
Sbjct: 1309 AKDEDVLVSLQLVNEMLVRGYEFLPIELGKSRGSKYVVEDGKVRLPFSSLKGLGGAAADA 1368

Query: 853  IMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            + + +     + S+E+      +  +   +L+ L   GAL   
Sbjct: 1369 LEKVTIHGEEYISVEELQQ---ASGVGSSILDRLRQVGALGDL 1408



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 28/93 (30%), Gaps = 5/93 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-----CAAG 66
           V L +H+  S ++G      I+        PA+AITD        E    A         
Sbjct: 307 VELHLHTKLSSMDGFCDPGGIVKLAHRMGHPAVAITDHGVCQGYPEAMLAADDIHKSDPD 366

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
            + I GC+          +      P      +
Sbjct: 367 FKLIYGCEAYFVDDMIPCVYGVKDQPLDGEFCV 399


>gi|262037779|ref|ZP_06011221.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia
            goodfellowii F0264]
 gi|261748251|gb|EEY35648.1| DNA polymerase III, alpha subunit, Gram-positive type [Leptotrichia
            goodfellowii F0264]
          Length = 1438

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 150/885 (16%), Positives = 309/885 (34%), Gaps = 167/885 (18%)

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG----GSSGPID 156
            +LV   +G + L EL+SR ++   G +  RI  + L  +    L+  +     G+SG + 
Sbjct: 603  ILVKNQDGLRDLYELISRSHIEFFGNKKPRIPKTLLNSMRKNLLLASSASAVFGNSGELV 662

Query: 157  RAFFFNSS-QVAEKRLLTFKKLFGDRLYVNLQ---RHRGYDR-------------YRESQ 199
              +   +  +  E++   +        Y+ +Q    +   +R                  
Sbjct: 663  NLYLRGTEREEIEEKAKFYD-------YIEIQPLSNYADLERDSLIESENAKIVLEMNRY 715

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
               L    +  +VAT +  +L E +     VL+  +           ++      +   E
Sbjct: 716  FYDLGKKLDKIVVATGDVHYLEEREAINRSVLVLGSGMGRRVFSYDKKLFFKTTEEMLEE 775

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
               + +D   A E  VE   + + +++   PI   F   + +      E+E+R      L
Sbjct: 776  FSYLGNDE--AYEVVVENTNKINDMIESVRPIPKGFYPPKIEG----AEDEVRKMTYEKL 829

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                 +         +   +R++ ELN I    F+  +LI    ++ +  N   VG  RG
Sbjct: 830  HELYGENV------PEHLNERIEKELNSIIGNGFAVLYLIAQKLVKKSLDNGYLVG-SRG 882

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------F 400
            S   S+ AY + IT+++ L                                         
Sbjct: 883  SVGSSIVAYMMGITEVNGLYPHYRCPNCKHSEFTELEGSGVDLEDKICPNCGTKYIKDGH 942

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
            ++ FE F+  +   +PD D++F  + + E+ +Y +  +G + V +  T  +L  K A   
Sbjct: 943  AIPFEVFMGFNGDKVPDIDLNFSGEYQGEIHKYTEELFGSDNVFRAGTISTLAEKNAFGY 1002

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            V +  +                                            ++ I++  EG
Sbjct: 1003 VKKYFEEVEGTT------------------------------EISKRKSEIMRIAKGCEG 1032

Query: 521  LYRHASTHAAGIVIGDRP--LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLG 575
              +    H  G+++  +   +    P+ R       D   T F+   +++  L+K D LG
Sbjct: 1033 ARKTTGQHPGGMIVVPKDKSIYDFCPIQRPANDVNADSKTTHFDYHVMDE-QLVKLDLLG 1091

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALE 633
                T L+     + Q    +D+  IP DD +   L +    LG    Q+ S      + 
Sbjct: 1092 HDDPTTLR-----ILQDLTGIDIYTIPLDDKKVMSLFSGTEALGATPEQIGSPVGSSGIP 1146

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
                  ++ +   +   +P     +V  +   +G +  ++           T   II   
Sbjct: 1147 EFGTSFVKQM---LVDTKPTTFAELVRISGLSHGTDVWLNNAQEYVRNGTATLSEIITVR 1203

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
              +    + +G   S A  +   + K    +  ++ + +     ++ + +    +  ++ 
Sbjct: 1204 DDIMNYLIDNGLDKSVAFTIMEFVRKGQPTKNPEKWKEYSKIMKEHKVKQWYIDSCEKI- 1262

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC------- 806
                 Y F K HA AY +++ + A+ K HYP+EF  A +  ++++ +    F        
Sbjct: 1263 ----KYMFPKGHAVAYVMMAVRIAYFKVHYPLEFYTAFLNRKVEDFKMTAMFKPIDELKK 1318

Query: 807  -------------------------QDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLA 840
                                      +     I++M   +       F++ + +I   L 
Sbjct: 1319 SRTELDRKGNLNAKEKQELFLYEILIEMHYRGIELMQIDIYKSDARQFRIENGKIRMPLI 1378

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            A+ G+G   A +++    +  F S+ED   R    KLN+ V++ L
Sbjct: 1379 AMDGLGEAVAINVINERKNGEFLSIEDLVKRT---KLNKTVVDLL 1420



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 1/90 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S + G +S  ++  +       A+A+TD   + S     ++      + I 
Sbjct: 327 VELHAHTNMSEMSGVVSAKDLAKRAKEFGHSAVAVTDFGVVHSFPFAYKE-SDENFKIIF 385

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G +  +   +   +T            +V 
Sbjct: 386 GVEAYVVDDEQEMITKPADRLIEDEIYVVF 415


>gi|268610447|ref|ZP_06144174.1| DNA polymerase III, alpha subunit [Ruminococcus flavefaciens FD-1]
          Length = 1441

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 144/905 (15%), Positives = 278/905 (30%), Gaps = 168/905 (18%)

Query: 84   KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEG 143
            ++ ++ +T        ++LV    G + L +LVS   L +   +   I  S L++   EG
Sbjct: 602  RLVDEIETKKLKSYHHIILVRNQAGLKNLYKLVSLSNL-EYFYKKPLIPKSILEQ-HREG 659

Query: 144  LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR--------- 194
            LI  +   +G + +A      +   +++  F        Y+ +Q     +          
Sbjct: 660  LIFGSACEAGELFQAILDIRDEEYIEQIAKFYD------YLEIQPIGNNEFMVRDGKAEN 713

Query: 195  -----YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                     ++V+L     +P+ AT +  F+  +D     +++A +     ++   P   
Sbjct: 714  DEELMQYNREIVELGDKLGIPVCATCDVHFIDPKDGIYRKIILA-SMGFKDAENQAPLYL 772

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                   +           +A E  +      +  ++V  PI         D      E 
Sbjct: 773  RTTEEMMKEFAYLGEE---KAKEIVITNTNNIADQIEVVRPIPKGTFTPTIDG----AEE 825

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            EL                       +   +RLD EL+ I +  FS  ++I    +  +  
Sbjct: 826  ELVKITHEKAFSIYGDPL------PEIVDKRLDRELSSIIKHGFSVLYIIAQKLVWNSVD 879

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------ 399
            N   VG  RGS   S  A    I++++PL                               
Sbjct: 880  NGYLVG-SRGSVGSSFVASMAGISEVNPLPPHYVCPKCKHSEFLLDGKYGSGFDLPPKNC 938

Query: 400  -----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
                         + FE FL  D    PD D++F  + +    RY +  +G   V +  T
Sbjct: 939  PDCGTDMTRDGHDIPFETFLGFDGDKAPDIDLNFSDEYQFWAHRYTEKLFGKSNVFKAGT 998

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
               +  K A   V +                  +    +                   + 
Sbjct: 999  ISVVAEKTAYGYVKKYC---------------EENGITL-------------------NN 1024

Query: 509  DRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVR---SDLPVTQFNMKWI 563
              L  ++    G+ R    H  G+V    D  +    P+        S++  T F    +
Sbjct: 1025 AELTRLAIGCTGIKRTTGQHPGGMVVVPSDYDVYDFTPVQHPADTADSEIITTHFTFNSL 1084

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
                      L L  L  +  +L    +    + +  +P  D +   + T    LG+   
Sbjct: 1085 HDT------ILKLDELGHVVPTLYKHLEDLTGIKIKDVPTSDPDVIRMCTNCDVLGVTP- 1137

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            E    +    G+        I ++   +P    + +  +   +G +  +     +     
Sbjct: 1138 EEIYCKTGSLGIPEMGTGFTIQMLLDAKPTKFSDFLQISGLSHGTDVWLGNAKDLIDQGV 1197

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T   +I     +    L  G     A  +   M    K +  KQ    I    ++    
Sbjct: 1198 CTISEVIGTRDSIMTYLLYKGVEPKMAFQI---MEWTRKGKAPKQFTPEIIQMLRDHNVP 1254

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--- 800
               +     +     Y F K+HAAAY + + +  W K H P+E+ A   ++  ++ +   
Sbjct: 1255 EWYIESCLKI----KYMFPKAHAAAYVIAAIKLGWFKLHRPLEYYATYFSVRGEDFDAEL 1310

Query: 801  ------------------------------KIKKFCQDARQFNIQIMPPSVNTPCV-DFK 829
                                           I     +      + +P  +      D+ 
Sbjct: 1311 AVKGIKAVRAKIEELKALGNDRSNKESALYDILLITNEMMSRGYEFLPIDLFKSHAKDYL 1370

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            V D ++    +A+ GVG   A  I +A     F S+E+F         ++  ++ L   G
Sbjct: 1371 VEDGKLRIPFSAMSGVGDNAAMGIYDAVQKGGFMSIEEFQQ---ESGASKTTIDMLKTIG 1427

Query: 890  ALDCF 894
            A    
Sbjct: 1428 AFGDL 1432



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 15/98 (15%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN-------LFSALEFSQKACA 64
           V L  H++ S ++       ++++ A+    A+AITD  N       +++  +       
Sbjct: 339 VELHCHTNMSAMDAVTDPVTLINRAASWGHQAMAITDHGNVQAFPDCMYNMPK------- 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
              + I G +  +       M   G+        +++ 
Sbjct: 392 -DFKVIYGMEAYVVNDVERDMVMYGEDGRSFDDEVIVF 428


>gi|217077387|ref|YP_002335105.1| DNA polymerase III PolC [Thermosipho africanus TCF52B]
 gi|217037242|gb|ACJ75764.1| DNA polymerase III, alpha subunit, Gram-positive type [Thermosipho
            africanus TCF52B]
          Length = 1365

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 147/879 (16%), Positives = 308/879 (35%), Gaps = 164/879 (18%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             I +LV    G + L +LVS  ++    K    +  + L+E   EGLI  TG   G I  
Sbjct: 543  HITILVKDKIGLKNLYKLVSDAHVK-YFKYVPFVPKNVLKEY-KEGLIFGTGCEQGEIFE 600

Query: 158  AFFFNS-SQVAEKRLLT--FKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVAT 214
            A   ++  +   + L    + ++F     V++  ++   +    ++  LA   ++P+V  
Sbjct: 601  ALKGSATDEEIIELLKEYDYVEIFPLSTIVSV--NKEQAKEIFKRLYFLAKRLKMPVVMV 658

Query: 215  NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENT 274
            +N+ +L  ED +A  VL++    +    +D        YL+   E++    ++    +  
Sbjct: 659  DNAHYLEPEDIKARHVLLSPKEKSNPHDEDLRDKDAQLYLRTTDELLKEAIEIFGDEKIA 718

Query: 275  VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
             E+       +      +    +K    I    E  +RN ++   +              
Sbjct: 719  REVVIENPNKIADMIEDIAPVKKKLHPPIIDGAEENVRNLSLKRAKELYGDPL------P 772

Query: 335  QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
            +   +RL+ EL  I    ++  + I    ++ A ++   VG  RGS   S  AY + IT+
Sbjct: 773  EVIEKRLEKELKSIIDNGYAVLYEIAHLIVKKANEDGYVVG-SRGSVGSSFVAYLMGITE 831

Query: 395  IDPLR---------------------------------------FSLLFERFLNPDRMSM 415
            ++PL                                          + FE F+      +
Sbjct: 832  VNPLPPHYICPNCKYLEFSKEVGSGYDLPDKLCPKCGTKLNKTGQDIPFEVFMGFKGDKV 891

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  + ++    Y+   +G + V +  T  ++  ++A+  V              
Sbjct: 892  PDIDLNFSGEYQERAHNYIVELFGKDNVLRAGTISTIAERSAIGYV-------------- 937

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                       +  + +    + R               ++K+ G+ R    H  G++I 
Sbjct: 938  ------RSYMELKDETLNTAEQVRL--------------AEKVAGVKRTTGQHPGGLMIV 977

Query: 536  DRPLS--QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
             + ++     P+                  E       D + L  L     ++  L    
Sbjct: 978  PKDMTVYDFTPIQYPANKKDSEMCTTHFAYESIH---DDLVKLDALGHDDPTMIKLLYEY 1034

Query: 594  VKVDLSLIPFDDHETYHLLTTKGT--------------LGIFQLESSGMRQALEGMQPDC 639
              VD + +P DD ET  + ++                 +GI +  +  +++ L+  +P  
Sbjct: 1035 TGVDPTTVPMDDKETLEIFSSLKPLKVRASDLGTDVGTIGIPEFGTDFVQEMLKETRPKS 1094

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
              +++ +  L                N ++ I S    +  ++     ++IY        
Sbjct: 1095 FAELVRISGLSHG-------TDVWLNNAQDIIRSGKATLSEVISCRDDIMIYL------- 1140

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
             + +G   S A  +   + K      +++         ++ + +    +  ++      Y
Sbjct: 1141 -IKAGVEESTAFKIMENVRKGKGITKEEE-----DLMREHNVPEWFIESCKKI-----KY 1189

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV-------------------- 799
             F K+HA AY  ++++ A+ K H+P+ + AA  +++ D                      
Sbjct: 1190 LFPKAHAVAYVSMAFRIAYFKVHFPLAYYAAFFSIKGDEFSIETILKGPNAIKKRLTELS 1249

Query: 800  ------------EKIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVG 846
                        EK+ +   +        +PP +       F + DN++   L  I GVG
Sbjct: 1250 VKMKKDVKEKNEEKVLEAALEMYLRGFSFLPPDILKSDYRRFLIEDNKLRIPLNRIPGVG 1309

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
             + A  I++A  +K F S+ED   R    K +   ++ L
Sbjct: 1310 DSVAYSIVQAREEKEFTSIEDLKKRTKLSKAHITTMKKL 1348



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS  S L+  + +   + +       A+AITD  N+ S     ++A +  I+PI 
Sbjct: 261 VPLHVHSKMSDLDAIIDIKEFVKRAKEWGWKAVAITDHGNVQSIPYLYEEAKSNEIKPIF 320

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           G ++    +    + N  K          + 
Sbjct: 321 GTEMYFLNEPGDIVKNLDKDYVIKDCVYTVF 351


>gi|302386245|ref|YP_003822067.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
 gi|302196873|gb|ADL04444.1| DNA polymerase III, alpha subunit [Clostridium saccharolyticum WM1]
          Length = 1516

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 154/921 (16%), Positives = 283/921 (30%), Gaps = 184/921 (19%)

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +D  + L   +           +++L +   G   L  L+S  ++ D   +  RI
Sbjct: 658  GVE-TLDELNGLSTMSADMIKKLPTHHVIILAANDVGRVNLYRLISYSHI-DFYARRPRI 715

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
              S L +   EGLI+ +   +G I +A     S     +L+ F        Y+ +Q    
Sbjct: 716  PKSVLNQ-NREGLIVGSACEAGEIYQALLRGVSDAELAKLVNFYD------YLEIQPLGN 768

Query: 192  Y-----DR-----------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
                  D                ++V L      P+ AT +  FL  ED     ++MA  
Sbjct: 769  NGFMLRDEKSSVKSEQDLIEINQRIVTLGEQFGKPVCATCDVHFLDPEDEVYRRIIMAGQ 828

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                       + + D           +  +      N  E     +             
Sbjct: 829  G---------FKDSDDQAPLYLRTTEEMLKEFQYLGPNKAEEVVIKNTRKIADMCEKISP 879

Query: 296  IEKE-CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
            +  + C  + +  + +LR            +             +RL+ EL+ I    F+
Sbjct: 880  VRPDKCAPVIENSDEDLRKICYDRAYAIYGENL------PSIVIERLERELHSIISNGFA 933

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------- 399
              ++I    +  + ++   VG  RGS   S  AY   IT+++ L                
Sbjct: 934  VMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFVAYLSGITEVNSLSPHYYCASCHYYDFDS 992

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                          F + FE FL       PD D++F  + + +
Sbjct: 993  DEVKQFSGMAGCDMPDKVCPVCGLPLAKDGFDIPFETFLGFKGDKEPDIDLNFSGEYQSK 1052

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G  +  +  T G+L  K A   V    +                       
Sbjct: 1053 AHDYTEVIFGKGQTFRAGTIGTLADKTAFGYVKNYYE----------------------- 1089

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYR 547
                                 +  I Q   G+ R    H  GI+       +    P+ R
Sbjct: 1090 -----------EHGVRKRNCEISRIVQGCVGVRRTTGQHPGGIIVLPHGEEIYSFTPVQR 1138

Query: 548  DVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
                   + VT           L+K D LG    T+++   D +        +  IP D 
Sbjct: 1139 PANDMTTMTVTTHFDYHSIDHNLLKLDILGHDDPTMIRMLQDLI----GFDPVKDIPLDS 1194

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             E   L      LGI   E  G  +      P+   D    + +       + +V     
Sbjct: 1195 KEVMSLFQNTSALGITP-EDIGGCKLGALGVPEFGTDFAMQMLIDTQPKYFSDLVRIAGL 1253

Query: 666  NGKEKIVSIH-PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEE 724
                 +   +   +    K T    I     + I  +  G     +  +  ++ K    +
Sbjct: 1254 AHGTDVWLGNAQTLIQEGKATIQTAICTRDDIMIYLISMGIEEGLSFSIMESVRKGKGLK 1313

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
             +     +    + +G+      +  ++      Y F K+HAAAY +++++ A+ K  YP
Sbjct: 1314 TE-----WEEEMTAHGVPDWYIWSCKKI-----KYMFPKAHAAAYVMMAWRIAYCKVFYP 1363

Query: 785  VEFLAASMTLEMDNVEK---------------------------------IKKFCQDARQ 811
            + + A+  ++  +                                       +  Q+   
Sbjct: 1364 LAYYASFFSIRANGFSYELMCQGRDKLEHYLADYKKRMDTLSKKEQDTLRDMRIVQEMYA 1423

Query: 812  FNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
                 MP  +       F++ D ++  SL++I G+G   A  I++A  D  F S EDF +
Sbjct: 1424 RGYDFMPIDIYRAKARHFQIIDGKLMPSLSSIDGLGEKAADAIVDAGKDGAFLSREDFRN 1483

Query: 871  RVDSKKLNRRV------LESL 885
            R    K+++ V      LE L
Sbjct: 1484 RT---KVSKTVCDLMGDLELL 1501



 Score = 86.4 bits (212), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQP 69
           V L  H+  S ++G   + +I+ +      PAIAITD   + +  +    A   G   + 
Sbjct: 406 VELHCHTKMSDMDGVSEVKDIVKRAKRWGMPAIAITDHGCVQAFPDA-NHALDKGDDFKL 464

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           I G +  +       + N          
Sbjct: 465 IYGVEGYLVDDLKQLVDNSKNQSLSDSY 492


>gi|251797402|ref|YP_003012133.1| DNA polymerase III subunit alpha [Paenibacillus sp. JDR-2]
 gi|247545028|gb|ACT02047.1| DNA polymerase III, alpha subunit [Paenibacillus sp. JDR-2]
          Length = 1437

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 148/925 (16%), Positives = 285/925 (30%), Gaps = 184/925 (19%)

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
             + +I     L                 +    A G + L ++VS  +  +  K+   I 
Sbjct: 585  AERNITGLHQLNDYVGLDISNSRPFHCNIYALNAAGKKNLFKMVSISHT-EHFKRVACIP 643

Query: 133  LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHR 190
             S L ++  EG+++++G   G         S + A +    +   ++     Y++L    
Sbjct: 644  KSKLVDM-REGILVISGCEKGEFFETVLNKSYEEALEVARFYDALEIQPVDFYMHLVDKG 702

Query: 191  -----GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
                         ++ ++      P++AT N  +L+  D    D+ +         +  R
Sbjct: 703  LVGSRAEIEQAMRRICEIGDELGKPVIATGNVHYLNPRDKLYRDIAIHGITGFSPLKDLR 762

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
             +                F     A E  V+     S   +       +      +    
Sbjct: 763  -KPDAHLRTTEEMLREFAFLGEARAYEVVVKNTVELSNRFEPFEMFPDKLFTPIIEG--- 818

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E E+RN      +              Q    RL+ EL  I +  FS  +LI    ++
Sbjct: 819  -AEEEIRNTCYDTAKSMYGDDL------PQVVIDRLEKELVPIIKFGFSANYLISEKLVK 871

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS------------------------ 401
             +  +   VG  RGS   SV A  L I++++PL                           
Sbjct: 872  KSNADGYLVG-SRGSVGSSVVATFLGISEVNPLPAHYLCKNSECRHSEWFLDGSVPSGFD 930

Query: 402  -------------------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
                               + FE FL      +PD D++F  + +     + +  +G + 
Sbjct: 931  LPDKNCPNCNLPMKGEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPTAHNFTKIMFGDKC 990

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            V +  T G+         V       +++            A                  
Sbjct: 991  VFRAGTIGT---------VAEKTGYGFARKYAEDHSKTWRSA------------------ 1023

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQ 557
                    L  ++  + G+ R    H  GIV       +  + P+         +   T 
Sbjct: 1024 -------ELSRLASGVTGVKRSTGQHPGGIVVVPNYMEVEDITPVQFPADDVNAEWKTTH 1076

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG- 616
            F+    E   L+K D LG    T+++     + Q    VD + IP +D +   +  +   
Sbjct: 1077 FDYHAFEA-NLLKLDILGHDDPTMMR-----MLQDLTGVDPTTIPMNDPKVMSMFNSTKA 1130

Query: 617  -------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
                         T G+ ++ +  +RQ L+  QP    D++ +  L     +        
Sbjct: 1131 LEVSPEKIRTPVATYGVPEMGTKFVRQMLQETQPSSFADLLQISGLSHGTGVWLGNAQ-- 1188

Query: 664  RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
                         LI       + VI  ++ +M      +G     A  +  ++ K    
Sbjct: 1189 ------------ELIKKGTCNIKTVIGCRDDIMLYLIYKAGMDAGLAFKITESVRKGKGL 1236

Query: 724  EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
              +     +I    +  +      +   +     +Y F K+HAAAY + + +TA+ K +Y
Sbjct: 1237 TPE-----WIEEMKRCKVPAWYIDSCLRI-----EYMFPKAHAAAYVISAVRTAYFKLYY 1286

Query: 784  PVEFLAASMTLEMDNVE---------------------------------KIKKFCQDAR 810
            P+ + A   ++  ++ +                                  + +   +  
Sbjct: 1287 PIHYYATYFSVRAEDFDLELLCQGYDAIQKKIIEIEDKGFNATTKEKNSISLLEMALEMT 1346

Query: 811  QFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
                   P  +       F V    +    +AI G+G   AR+I  A     F S+EDF 
Sbjct: 1347 ARGFSFKPIDLYRSDATKFIVDGETLIPPFSAIGGIGENAARNIAAAKDAGEFLSIEDFQ 1406

Query: 870  SRVDSKKLNRRVLESLVFAGALDCF 894
             R    K ++ ++E L   G     
Sbjct: 1407 QR---SKASKTIIEVLTGMGCFRGL 1428



 Score = 84.8 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +HS+ S ++    +   +   A     AIAITD +N+    E  + A   GIQ + 
Sbjct: 335 VEFHLHSTMSAMDAVTPIGEYVKMAAKWGHKAIAITDHSNIHCYPEAFKSAKKNGIQVLF 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       + N  +    T   IV 
Sbjct: 395 GLEANVVNDAVPMVLNSREAALATAEYIVF 424


>gi|254932365|ref|ZP_05265724.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262]
 gi|293583921|gb|EFF95953.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262]
 gi|328475042|gb|EGF45830.1| DNA polymerase III PolC [Listeria monocytogenes 220]
          Length = 1444

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 154/916 (16%), Positives = 287/916 (31%), Gaps = 173/916 (18%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            +D     N  M               +   TA G + L +L++   + +   +  RI  S
Sbjct: 597  IDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYFYRVPRIPRS 655

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NLQ 187
             L+++  EGLI+ T  S G +  A      Q AEK    +   ++    +Y       L 
Sbjct: 656  QLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIERELV 714

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R           +V++      P+VAT N  +      + +  ++  +            
Sbjct: 715  RDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP-VDKIYRKILIHSQGGANPLNRAEL 773

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                    +       F    +A E  V  A      ++   PI       + D      
Sbjct: 774  PDVHFRTTDEMLKEFAFLGEEKAKEIVVTNANLVVDWMEDLKPIKDELYTPKIDG----A 829

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+E+RN + A       +         +    RL+ EL  I    F+  +LI    ++ +
Sbjct: 830  EDEVRNMSYAMAHQLYGE------KLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKS 883

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
              +   VG  RGS   S  A    IT+++PL                             
Sbjct: 884  LVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDGSVGSGFDLPDK 942

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  D +     Y +  +G + V + 
Sbjct: 943  DCPHCGTPYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFRA 1002

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V R  +   +   R  +                             
Sbjct: 1003 GTIGTVAEKTAFGYV-RNYERDMNMTIRGAE----------------------------- 1032

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVR---SDLPVTQFNMK 561
                +  +     G+ R    H  GI+       +    P+        S+   T F+  
Sbjct: 1033 ----IDRLVAGCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATDSEWKTTHFDFH 1088

Query: 562  WIEKAGLIKFDFLGLKTL---TLLQKSLDFLAQRGVKVDLSLIPFDDH------ETYHLL 612
             I    ++K D LG        +LQ       +     D  ++           ++  + 
Sbjct: 1089 SIHD-NVLKLDILGHDDPTAIRMLQDLSGIDPKTIPTDDPDVMKLFGSTESLGVKSADID 1147

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
            +  GTLGI +  +  +RQ LE  +P    +++ +  L                N +E I 
Sbjct: 1148 SKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG-------TDVWLGNAEELIK 1200

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
            +    +  ++     ++++         +  G   S A  +  ++ K      + ++   
Sbjct: 1201 NKTCELPDVIGCRDDIMVFL--------IYQGLESSLAFKIMESVRKGKGLTEEMEEAMM 1252

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
             +               +    K   Y F K+HAAAY +++ + A+ K HYP+ F A   
Sbjct: 1253 ANK----------VPLWYIESCKKIKYMFPKAHAAAYVLMAVRIAYFKVHYPLYFYATYF 1302

Query: 793  TLEMDNVEKIKK---------------------------------FCQDARQFNIQIMPP 819
            T+  D+ +                                        +           
Sbjct: 1303 TVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHFQKV 1362

Query: 820  SVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
             +     D F +  + +     AI  +GT  A+ I+ A  +  F S ED   R    K++
Sbjct: 1363 DLYKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQR---GKVS 1419

Query: 879  RRVLESLVFAGALDCF 894
            + +++ +   G L+  
Sbjct: 1420 KTIIQYMDDQGCLEGL 1435



 Score = 82.1 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 342 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 401

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G + ++         N          
Sbjct: 402 GIEANLIDDGVPIAYNDQHIALEDAT 427


>gi|150020931|ref|YP_001306285.1| DNA polymerase III PolC [Thermosipho melanesiensis BI429]
 gi|149793452|gb|ABR30900.1| DNA polymerase III, alpha subunit [Thermosipho melanesiensis BI429]
          Length = 1362

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 159/883 (18%), Positives = 306/883 (34%), Gaps = 171/883 (19%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             I +LV    G + L +LVS  ++    K    +    L +   EGL++ TG  SG I +
Sbjct: 539  HITILVRDKVGLKNLYKLVSDAHVK-YFKYVPFVPKKELIKY-REGLLLGTGCESGEIFQ 596

Query: 158  AFFFNSSQVAEKRLLT---FKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVAT 214
            A   +S+      +L    + ++F     V+++R     +    ++ +LA   +LP+V  
Sbjct: 597  ALTGSSTDEEILEMLKDYDYVEIFPLDTIVSVER--EVAKQVYKRLYELAKRLDLPVVMV 654

Query: 215  NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV----SIFSDLPEA 270
            +N+ FL  ED +A  VL++    +     D        YL+   EM+     IF D   A
Sbjct: 655  SNAHFLEPEDIKARHVLLSPIEKSNPHDDDLRDKDAKLYLRTTDEMMKEAFEIFEDEKIA 714

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
             E  VE   + +  +      + R +      I +  + ++R+ ++   +          
Sbjct: 715  YEIVVENTNKIANNMIEDVKPIKRKLHP---PIIEGADEKVRSLSIKRAKELYGDPL--- 768

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                    +RL+ EL  I    ++  + I    ++ A ++   VG  RGS   S  AY +
Sbjct: 769  ---PDVIEKRLEKELESIIGHGYAVLYEIAHLIVKKANEDGYVVG-SRGSVGSSFVAYLM 824

Query: 391  TITDIDPLR---------------------------------------FSLLFERFLNPD 411
             IT+++PL                                          + FE F+   
Sbjct: 825  GITEVNPLPPHYLCPKCKYLEFSKDMGSGYDLPNKLCPKCGTKLEKTGQDIPFEVFMGFK 884

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
               +PD D++F  + ++    Y+   +G + V +  T  ++  K+A+  V          
Sbjct: 885  GDKVPDIDLNFSGEYQERAHSYIVELFGKDNVLRAGTISTIAEKSAIGYV---------- 934

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                           V  + +    + R               ++ + G+ R    H  G
Sbjct: 935  ----------KSYMEVKGETLHQAEQIRL--------------AEMVAGVKRTTGQHPGG 970

Query: 532  IVIGDRPLS--QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            ++I  + ++     P+                  E       D + L  L     ++  L
Sbjct: 971  LMIVPKDMTVYDFTPIQYPANKKDSEMCTTHFAYESIH---DDLVKLDALGHDDPTMLKL 1027

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGT--------------LGIFQLESSGMRQALEGM 635
                  VD + +P DD +T  + ++                 +GI +  ++ +++ L+  
Sbjct: 1028 LYEYTGVDPTKVPMDDKKTLEIFSSLKPLKVKAEELGIDVGTIGIPEFGTNFVQEMLKET 1087

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
            +P    +++ +  L                N ++ I S +  +  ++     ++IY    
Sbjct: 1088 RPKTFAELVRISGLSHG-------TDVWLNNAQDIIKSGNATLSEVISCRDDIMIYLINA 1140

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
                    G   S A  +   + K      D +K             +      F    K
Sbjct: 1141 --------GVEESRAFKIMENVRKGKGISEDDEKLMR----------EKNVPEWFIQSCK 1182

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------------- 799
               Y F K+HA AY  ++++ A+ K HYP+ + AA  +++ D                  
Sbjct: 1183 KIKYLFPKAHAVAYVSMAFRIAYFKVHYPLAYYAAYFSIKGDEFSIETILRGIKSIKKKL 1242

Query: 800  ----------------EKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAI 842
                            EK+ +   +        +PP +       F +  N +   L  I
Sbjct: 1243 AELNAQMKKDVKEKNEEKVLEAALEMYLRGYSFLPPDILKSDYRRFIIEGNELRIPLNKI 1302

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
             GVG   A  I++A  +KPF S++D   R    K +   +  L
Sbjct: 1303 PGVGDNVALSIIQARMEKPFTSIDDLKKRTKLSKAHINTMRKL 1345



 Score = 96.8 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S L+  + +  ++ K+      A+AITD  N+ S     ++A   GI+PI 
Sbjct: 257 VELHIHSKMSDLDAIVDIKEVVRKVKEWGWSAVAITDHGNVQSIPYLFEEAEKNGIKPIF 316

Query: 72  GCQLDI--DMQDNLKMTNQGKTPFPTVPSI 99
           G ++ +  +M D +K   + K       ++
Sbjct: 317 GTEMYVLNEMGDIVKNLVEDKMLDDVTYTV 346


>gi|194467743|ref|ZP_03073729.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23]
 gi|194452596|gb|EDX41494.1| DNA polymerase III, alpha subunit [Lactobacillus reuteri 100-23]
          Length = 1443

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 140/911 (15%), Positives = 285/911 (31%), Gaps = 172/911 (18%)

Query: 55   ALEFSQKACA-AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
              +F + A A   ++        +D  +   M             + +   T  G + L 
Sbjct: 582  LYKFLKDAEARYDVK-------YVDDLNKH-MEENNAYRHARPFHVTIFAQTQAGLKNLF 633

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +LVS    ++   +  RI  + L +   EGL++ T  SSG +  A        A ++   
Sbjct: 634  KLVSLSN-VEYFYRVPRIPRTVLTKY-REGLLLGTACSSGEVFTAMMEKGYDQALEKARY 691

Query: 174  FKKLFGDRLYVNLQR----------HRGYDRYRESQVV----QLAYTHELPLVATNNSLF 219
            +        ++ +Q           H   D      ++    +L    E  +VAT +  +
Sbjct: 692  YD-------FIEVQPKPNYAPLLEQHVIADEEHLEDILKNMVKLGDELEKTVVATGDVHY 744

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            L   D     +L+          +   R        +       F    +A E  VE + 
Sbjct: 745  LDPHDGIYRKILINSQGGANPLNRT-ERPEVHFRTTDEMLNKFAFLGEEKAHELVVENSN 803

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
            + +  +      +    +K      K  E E++++                    Q  + 
Sbjct: 804  KIAAEIDD---NIRPVKDKLYPPHMKGAEQEIQDRTWNTARKWYGDPL------PQLVQD 854

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            R++ ELN I +  FS ++LI    +  + K+   VG  RGS   SV A    IT+++PL 
Sbjct: 855  RIELELNSIVKNGFSVHYLIAQRLVAKSNKDGYLVG-SRGSVGSSVVATLSGITEVNPLP 913

Query: 400  -----------------------------------------FSLLFERFLNPDRMSMPDF 418
                                                       + F+ FL      +PD 
Sbjct: 914  PHYRCPNCQFTHFYTQGEYSSGFDLPDKKCPKCGTLMVKDGHDIPFQTFLGFKGNKVPDI 973

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  D +     Y++  +G + V +  T G++  K A   V                 
Sbjct: 974  DLNFSGDYQPIAHNYMKVLFGEKNVFRAGTIGTVADKTAYGYV----------------- 1016

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD-- 536
                            +  FR+A            +++   G+ R    H AGI+I    
Sbjct: 1017 ---------KAYERDTEKEFRKAEED--------RLAKGATGVKRTTGQHPAGIIIVPDD 1059

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
              +    P+      D     +     +   +   + L +  L     ++    Q    +
Sbjct: 1060 MDIYDFTPVQYPA--DDQTAAWETTHFDFHSIH-DNILKMDILGHDDPTMIRALQDLSGI 1116

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            D   IP DD     L ++   LG+   Q++S      L       +  +   +    P  
Sbjct: 1117 DPQSIPMDDPGVMALFSSPKVLGVTEEQIQSKTGTLGLPEFGTRFVRGM---LEDTHPKN 1173

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
               ++  +   +G    +     +      T   +I     +    +  G     +  + 
Sbjct: 1174 YSQLLQISGLSHGTGVWLDNAQELIKQGIATIANVIGCRDNIMTDLIHYGMDSEISFQIM 1233

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
              + K      +     +     +  + +    +  ++      Y F ++HAAAY +++ 
Sbjct: 1234 EHVRKGRGIPDE-----WQEKMHEANVPQWYMDSCLKI-----KYMFPRAHAAAYVLMAL 1283

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKK------------------------------ 804
            + A+ K ++P+ +  A  ++  D+ + +                                
Sbjct: 1284 RIAYFKVYFPLVYYCAFFSVRADDFDVVAMSHGKDAVKQRMKEINDKGNDASAKEKNLLT 1343

Query: 805  ---FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                  +  +   +     +      D+ +  + +     A+ G+G   A+ I+ A  ++
Sbjct: 1344 ILELANEMLERGFKFKMVDIEKSDASDWLIDGDSLIAPFRAVPGLGLNVAKQIVAAREER 1403

Query: 861  PFDSLEDFCSR 871
            PF S ED   R
Sbjct: 1404 PFLSKEDLAER 1414



 Score = 87.2 bits (214), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++   S+  +  +      PAIA+TD  N+ +  E    A   GI+ + 
Sbjct: 340 VELHTHTTMSQMDATNSITELATRAHKWGHPAIAVTDHGNVQAFPEAFSVAQKTGIKMLY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       + N+          ++ 
Sbjct: 400 GMEANVVDDGIPLVYNENHEELAHQTYVIF 429


>gi|256028575|ref|ZP_05442409.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
 gi|289766495|ref|ZP_06525873.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
 gi|289718050|gb|EFD82062.1| DNA polymerase III alpha subunit [Fusobacterium sp. D11]
          Length = 1449

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 154/894 (17%), Positives = 308/894 (34%), Gaps = 157/894 (17%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS-----G 153
            +++LV T  G + +  LVS  ++   G +  RI  S L E   EGLI+ +  ++     G
Sbjct: 612  VMVLVKTQAGLKNMYRLVSEAHIKYFGNKKARIPKSVLIE-NREGLIIGSSLTAHFMNTG 670

Query: 154  PIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYVNLQ------RHRGYDR--YRESQVVQL 203
             +   +  +  +  E+    +   +L     Y  L           Y+           L
Sbjct: 671  ELADLYLRHDLEKLEEAAKFYDYIELLSKSTYNELIEKDETGALGSYEEVEKMNKYFYDL 730

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                 + + A++N  +L E +     +L+  +    V    +  +    Y +   EM+  
Sbjct: 731  GKRLGILVTASSNVHYLDENEDIIRSILLYGSG--TVYNSRQYSINNGFYFRTTDEMLKE 788

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            FS L E     V +    + I  +    +    E       +  E  +++          
Sbjct: 789  FSYLGEDEAKEV-VITNTNKIADMIESEIKPIPEGFYPPKMENAEEIVKSMTYEKAYRIY 847

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                       +    RL+ ELN I    FS  +L     ++ +  N   VG  RGS   
Sbjct: 848  GNPL------PEIVSARLERELNAIINNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGS 900

Query: 384  SVTAYALTITDIDPLR-----------------------------------------FSL 402
            S+ A+ + IT+++ L                                          +S+
Sbjct: 901  SLVAFMMGITEVNALYPHYICDNPECKYSEFIEKEGVGIDLPDKICPKCGAKLRKDGYSI 960

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE F+      +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V 
Sbjct: 961  PFEVFMGFKGDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAEAYVR 1020

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            +                              +D+     R     + RL + ++K     
Sbjct: 1021 K----------------------------YFEDNNLNAVRAEIIRLGRLCQGAKKTT--- 1049

Query: 523  RHASTHAAGIVIGDR--PLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLK 577
                 H  G+VI  +   + +  P+ R    +      T ++   +++  L+K D LG  
Sbjct: 1050 ---GQHPGGMVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDE-QLVKLDILGHD 1105

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGM 635
              T ++     L Q    +++  IP  D +T  + ++  +LG+   Q+ +      +   
Sbjct: 1106 DPTTIK-----LLQEYTNMEIKDIPLADKDTLKIFSSTESLGVTPEQIGTEIGTYGIPEF 1160

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
                +  +   +   RP     +V  +   +G    ++         + T   II     
Sbjct: 1161 GTGFVRQM---LIDTRPTTFAELVRISGLSHGTNVWLNNAQEFVRNGQATLSQIITVRDD 1217

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            +    +  G   S+A  +   + K   ++  +  E++ +   +  +      +   +   
Sbjct: 1218 IMNYLIDQGLDNSDAFKIMEFVRKGKPKKEPENWEKYSAMMKEKNVPDWYIESCRRI--- 1274

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK-------------- 801
              +Y F K HA AY +++ + A+ K H P+ F AA ++ + D+ +               
Sbjct: 1275 --EYMFPKGHAVAYVMMAMRIAYFKVHQPLAFYAAFLSRKADDFDMEFMSRGILAKQKLE 1332

Query: 802  -----------------IKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIK 843
                             I +   +     I+++P  +       F + D +I   L  I 
Sbjct: 1333 ELSKEPKLDPKKKNEQAICEIVVEMEARGIELLPVDIYLSDGKKFTIEDGKIRIPLIGIN 1392

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            G+G      I++   +  F S+ED   R   ++    V++ L   GA+     +
Sbjct: 1393 GLGGAVIDAIVKEREEGKFISVEDLKRRTKMQQ---PVIDKLKNIGAISSLSET 1443



 Score = 77.9 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
           V L  H+  S + G   + +I+ +       AIAITD   + S     + A         
Sbjct: 331 VELHAHTKMSEMVGVTDVEDIIKRAKEYGHKAIAITDYAVVHSYPAAFKTAKKLSTDEEK 390

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           ++ I GC++ +   +   +TN           +V 
Sbjct: 391 MKAIFGCEMYMIDDEAPMVTNPKDKKIDDEEFVVF 425


>gi|116872751|ref|YP_849532.1| DNA polymerase III PolC [Listeria welshimeri serovar 6b str.
            SLCC5334]
 gi|123466238|sp|A0AIC1|DPO3_LISW6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116741629|emb|CAK20753.1| DNA polymerase III [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 1444

 Score =  209 bits (531), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 150/919 (16%), Positives = 285/919 (31%), Gaps = 177/919 (19%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             ++     N  M               +   T  G + L +L++   + +   +  RI  
Sbjct: 596  DINFHDSLNDYMGEGDAYKRARPFHATIYAQTDVGLKNLFKLITMSNI-NYFYRVPRIPR 654

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NL 186
            S L+++  EGLI+ T  S G +  A      Q AEK +  +   ++    +Y       L
Sbjct: 655  SQLKKL-REGLIVGTACSQGELFEAMMQKGMQAAEKVVEFYDFIEIQPKPVYAPLIEREL 713

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R           +V++      P+VAT N  +      + +  ++  +           
Sbjct: 714  VRDEKALEEILKNIVRVGEKAGKPVVATGNVHYKDP-VDKIYRKILIHSQGGANPLNRAE 772

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                     +       F    +A E  V  +      ++   PI       + D     
Sbjct: 773  LPDVHFRSTDEMLKEFAFLGEEKAKEVVVTNSNLVVDWMEELKPIKDELYTPKIDG---- 828

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+E+RN +         +         +    RL+ EL  I    F+  +LI    ++ 
Sbjct: 829  AEDEVRNMSYDMAHQLYGENL------PEIVEARLEKELKSIIGHGFAVIYLISHKLVKK 882

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            +  +   VG  RGS   S  A    IT+++PL                            
Sbjct: 883  SLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDGSVGSGFDLPD 941

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL      +PD D++F  D +     Y +  +G + V +
Sbjct: 942  KECPHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFR 1001

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V R  +   +   R  +                            
Sbjct: 1002 AGTIGTVAEKTAFGYV-RNYERDMNMTIRGAE---------------------------- 1032

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVR---SDLPVTQFNM 560
                 +  +     G+ R    H  GI+       +    P+        S+   T F+ 
Sbjct: 1033 -----IDRLVAGCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATDSEWKTTHFDF 1087

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY----------- 609
              I    ++K D LG    T ++   D          +     D  + +           
Sbjct: 1088 HSIHD-NVLKLDILGHDDPTAIRMLQDLSG--IDPKTIPTDDPDVMKLFGSTESLGVKPA 1144

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             + +  GTLGI +  +  +RQ LE  +P    +++ +  L                N +E
Sbjct: 1145 DIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG-------TDVWLGNAEE 1197

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I +    +  ++     ++++         +  G   S A  +  ++ K      + ++
Sbjct: 1198 LIKNKTCELPDVIGCRDDIMVFL--------IYQGLESSLAFKIMESVRKGKGLTEEMEE 1249

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
                +               +    K   Y F K+HAAAY +++ + A+ K HYP+ F A
Sbjct: 1250 AMMANK----------VPLWYIESCKKIKYMFPKAHAAAYVLMAVRIAYFKVHYPLYFYA 1299

Query: 790  ASMTLEMDNVEKIKK---------------------------------FCQDARQFNIQI 816
               T+  D+ +                                        +        
Sbjct: 1300 TYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHF 1359

Query: 817  MPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +     D F +  + +     AI  +GT  A+ I+ A  +  F S ED   R    
Sbjct: 1360 QKVDLYKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQR---G 1416

Query: 876  KLNRRVLESLVFAGALDCF 894
            K+++ +++ +   G L+  
Sbjct: 1417 KVSKTIIQYMDDQGCLEGL 1435



 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 342 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 401

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G + ++         N          
Sbjct: 402 GIEANLIDDGVPIAYNDQHIGLQDAT 427


>gi|184155198|ref|YP_001843538.1| DNA polymerase III PolC [Lactobacillus fermentum IFO 3956]
 gi|183226542|dbj|BAG27058.1| DNA-directed DNA polymerase III alpha subunit [Lactobacillus
            fermentum IFO 3956]
          Length = 1447

 Score =  209 bits (531), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 143/905 (15%), Positives = 292/905 (32%), Gaps = 172/905 (19%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            +      N  MT+ G         + +L +T  G + L +LVS    ++   +  RI  S
Sbjct: 596  VTYVDDLNKHMTDNGAYRHARPFHVTILAATQAGLKNLYKLVSLSN-VEYFARVPRIPRS 654

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------ 188
             L     EGL++ T  + G +  A        A++    +        Y+ +Q       
Sbjct: 655  VLNRY-REGLLLGTACADGEVFTAMMQKGYGEAKRLAEFYD-------YIEVQPKPNYAP 706

Query: 189  --------HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     + +       +V+L      P+VAT ++ +++ ED     +L+        
Sbjct: 707  LLESGVITDQAHLEDILKNMVKLGSALNKPVVATGDAHYINPEDAIYRKILINSQGGANP 766

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              +   R        +    +  F     A +  V+     + ++      +   +    
Sbjct: 767  LNRT-ERPDVHFRTTDEMLDLFSFLGEDVAKQIVVDNTHLVTDMVDDGIRPVKAGLYPPH 825

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  E E++++     +              Q  + R++ ELN I    FS ++LI 
Sbjct: 826  M---EGAEQEIQDRTWTTAKEWYGDPL------PQLVKDRVELELNSIVSNGFSVHYLIA 876

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               +  + K+   VG  RGS   SV A    IT+++PL                      
Sbjct: 877  QRLVAKSTKDGYLVG-SRGSVGSSVVATLSGITEVNPLPPHYRCPNCQYSHFYTKGEYSS 935

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + F+ FL      +PD D++F  D +     Y++  +G
Sbjct: 936  GFDLPDKDCPKCGTKMIGDGHDIPFQTFLGFKGNKVPDIDLNFSGDYQPIAHNYMKVLFG 995

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
               V +  T G++  K A   V                            +A   D   +
Sbjct: 996  ENNVYRAGTIGTVADKTAYGYV----------------------------KAYERDKEVQ 1027

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVRSD---LP 554
                 +  +      +    G+ R    H AGI+I      +    P+            
Sbjct: 1028 FRGAEEDRL------ASGATGVKRTTGQHPAGIIIVPDDMEIYDFTPVQYPADDQSAAWE 1081

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT 614
             T F+   I    ++K D LG    T+++       Q    ++   IP DD     L ++
Sbjct: 1082 TTHFDFHSIHD-NILKMDILGHDDPTMIR-----ALQDLSGINPQSIPMDDPGVMSLFSS 1135

Query: 615  KGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
               LG+   Q+ S      L       +  +   +    P     ++  +   +G    +
Sbjct: 1136 PEALGVTEEQINSKTGTLGLPEFGTRFVRGM---LEDTHPQNYSQLLQISGLSHGTGVWL 1192

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
                 +      T   +I     +    +  G     +  +   + K      +     +
Sbjct: 1193 DNAQELIKNGTATIANVIGCRDNIMTDLIHYGLDSETSFQVMEHVRKGKGIPEE-----W 1247

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
                ++ G+ +    +  ++      Y F ++HAAAY +++ + A+ K ++P+ + AA  
Sbjct: 1248 QEKMTEVGVPQWYLDSCLKI-----KYMFPRAHAAAYVLMALRIAYFKVYFPLVYYAAFF 1302

Query: 793  TLEMDNVEKIKK---------------------------------FCQDARQFNIQIMPP 819
            ++  D+ + +                                      +  +   +    
Sbjct: 1303 SVRADDFDVVAMSHGKEAVKSAMQAITSKGNEATAKEKSLLTILELANEMLERGFKFKMV 1362

Query: 820  SVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
             +      D+ +  + +     AI G+G   A+ I+ A  +KPF S +D   R    K++
Sbjct: 1363 DIERSDATDWLIDGDTLIAPFRAIPGLGINVAKQIVAAREEKPFLSKQDLSER---GKVS 1419

Query: 879  RRVLE 883
            + ++E
Sbjct: 1420 KTLIE 1424



 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA---CA--AG 66
           + L +H++ S ++   ++   + +     QPAIAITD   L    E    +       + 
Sbjct: 336 IELHLHTTMSTMDATNTIGEYVKQAIKWGQPAIAITDHAGLQGFPEAFSSSYDGKKDESK 395

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           I+ + G + ++       + N+   P    P ++ 
Sbjct: 396 IKMLYGVEANVVDDGVPLVYNENHLPLKGQPYVIF 430


>gi|325263721|ref|ZP_08130454.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            sp. D5]
 gi|324030759|gb|EGB92041.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            sp. D5]
          Length = 1498

 Score =  209 bits (531), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 161/947 (17%), Positives = 299/947 (31%), Gaps = 185/947 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F Q      I         +   +     N           I++L+    G   L +L
Sbjct: 617  VKFVQMLKEQNIT-------TLKEMNRFGDMNPNAIRKLPTYHIIILIKNDIGRYNLYQL 669

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +++ +L     +  RI  S L E   EGLI+ +   +G + +A   N S  +  RL  F 
Sbjct: 670  ITQSHLT-YYARRPRIPKSVLNEY-REGLIVGSACEAGELYQAILNNKSAESIARLADFY 727

Query: 176  KLFGDRLYVNLQRHR-----------------GYDRYRESQVVQLAYTHELPLVATNNSL 218
                   Y  +Q                            ++V+L    + P+V T +  
Sbjct: 728  D------YYEIQPLGNNRFMMVSDKYPDINTKEDLEEINRKIVELGEKFKKPVVGTCDVH 781

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            FL  ED E +  ++        + +  P                  +          EI 
Sbjct: 782  FLDPED-EVYRRIIMAGKGFSDADEQPPLYLRTTEEMLEEFEYLGSA-------KAREIV 833

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
               +  +      +      +C  +    E +LR+           +         +   
Sbjct: 834  IENTNKICDMVEKISPINPNKCPPVIANSEQDLRDICYNKAHEIYGEDL------PEPVS 887

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             RL+ ELN I    +S  ++I    +  +  +   VG  RGS   S  A    IT+++PL
Sbjct: 888  TRLEKELNSIISNGYSVMYIIAQKLVWKSNDDGYLVG-SRGSVGSSFVATMSGITEVNPL 946

Query: 399  R---------------------------------------------FSLLFERFLNPDRM 413
                                                          F + FE FL     
Sbjct: 947  SPHYYCEKCHYNEFDSPEVKAFAGGCGFDMPDKVCPNCGETLVKAGFDIPFETFLGFKGD 1006

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
              PD D++F  D + +  +Y +  +G     +  T G+L  K A   V            
Sbjct: 1007 KEPDIDLNFSGDYQAKAHKYTEVLFGEGHTFKAGTIGTLADKTAFGYV------------ 1054

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
               +    +  H      I                     I+    G+ R    H  GIV
Sbjct: 1055 ---RNYYEERGHRKRKCEIDR-------------------ITVGCTGIRRSTGQHPGGIV 1092

Query: 534  --IGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQ------ 583
                   +++  P+           +T           L+K D LG    T+++      
Sbjct: 1093 VLPHGHSINEFTPVQHPANDMTTDIITTHFDYHSIDHNLLKLDILGHDDPTMIRTLEEYI 1152

Query: 584  --KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
               ++D           + IP DD +   L      LGI   +  G      G+     +
Sbjct: 1153 TSDAMDNEYNDENPFIATEIPLDDKKVLSLFHDTSALGIKPEDIDGCNLGCLGIPEFGTD 1212

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
             +I +V   +P  + +++  +   +G    +     +    K T    I     + I  +
Sbjct: 1213 FVIQMVQDAKPQSLSDLIRISGLSHGTNVWLGNAQELVKSGKATISTCICTRDDIMIYLI 1272

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
              G   + +  +  ++ K    + +         A K        +   + +     Y F
Sbjct: 1273 NQGVDSALSFTIMESVRKGKGLKPE------WEEAMKEKDVPDWYIWSCKQI----SYMF 1322

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASM----------------------------- 792
             K+HAAAY +++Y+ A+ K +YP+ +  A                               
Sbjct: 1323 PKAHAAAYVMMAYRIAYCKINYPLAYYGAYFGIRANAFSYEIMCQGKDKLNYYIKDYKRR 1382

Query: 793  ----TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGT 847
                + +  +V K  K  Q+      + +P  + T     F++ D ++   L++I+G+G 
Sbjct: 1383 ADSLSNKEQDVVKDMKIVQEMYARGYEFLPLDIYTAKATKFQIIDGKLMPPLSSIEGMGE 1442

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              A  + EA+ D P+ SL+DF  R    K+++ V++ +   G     
Sbjct: 1443 KAAEAVEEAAKDGPYLSLDDFRQRT---KVSKTVIDFMADLGLFGDL 1486



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 12/94 (12%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL-------EFSQKA-C 63
           V L  H+  S ++G   + +I+ +      PA+AITD       +        F +    
Sbjct: 372 VELHCHTKMSDMDGVSEVKDIVKRAHDWGHPAVAITDH----GIVQSFPDANHFIETLDK 427

Query: 64  AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
               + I G +  +         N G        
Sbjct: 428 DDPFKVIYGVEGYVVDDLTEIAVNAGDERLDDTY 461


>gi|154500376|ref|ZP_02038414.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC 29799]
 gi|150270881|gb|EDM98164.1| hypothetical protein BACCAP_04043 [Bacteroides capillosus ATCC 29799]
          Length = 1390

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 147/950 (15%), Positives = 284/950 (29%), Gaps = 202/950 (21%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             + F +     GI  +      I+ +             P    +++L     G + L  
Sbjct: 524  LVPFFKMLEDLGIHTL----QSINPEMTRLRVKGKARRQPK--HLIVLAKNNMGLRNLYT 577

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLT 173
            L+S+ +L +  K+   +  S + +   EGLI+ +   +G +  A   +      ++    
Sbjct: 578  LISKAHL-EHFKRYPIMPKSLINQY-REGLILGSACEAGELFEAVVKHKDFNELKRIASW 635

Query: 174  FKKLFGDRLYVNLQRH------------RGYDRYR--ESQVVQLAYTHELPLVATNNSLF 219
            +        ++ +Q              +  +  R     +V L    + P+ AT +  F
Sbjct: 636  YD-------FLEIQPLCNNAFMLRKGMVQSEEELRDFNRTIVALGKALDKPVCATGDVHF 688

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            L  ED E +  ++             P                   D    +     +  
Sbjct: 689  LDPED-EIYRHILLDTKGFEDCDAPLPLYFKTTEEMMEEFSYLGKEDCYNVVVRNTNLVA 747

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
                 +           +       ++   EL        +    +         Q    
Sbjct: 748  DWCDRI-------NPLPKGLFAPKLEDSAGELSRLVWGKAKSLYGE------EVPQIVSD 794

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            R++ EL  I +  +   ++     +Q + ++   VG  RGS   S+ A+   IT+++ L 
Sbjct: 795  RINAELGDILKRHYDVIYMSAQKLVQNSLEHGYLVG-SRGSVGSSLVAFMSGITEVNSLP 853

Query: 400  -------------------------------------------FSLLFERFLNPDRMSMP 416
                                                       F++ FE FL      +P
Sbjct: 854  PHYRCPNCKHSDFEIAKELGAGCGADMPDAVCPVCGAQYAKDGFNIPFETFLGFGGDKVP 913

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D++F  + + +  RY    +G   V +  T G++  K A   V + L+          
Sbjct: 914  DIDLNFSGEYQAKAHRYTFELFGETHVFRAGTIGTVAEKTAFGYVKKYLE---------- 963

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--I 534
                            A+++R                 +    G+ R    H  G+V   
Sbjct: 964  --------KRGIHVPRAEENRL----------------AHGCTGVKRTTGQHPGGMVVIP 999

Query: 535  GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL-- 589
             +R +    P+         D+  T F    +E   L+K D LG    T+++   D    
Sbjct: 1000 QNREIYDFCPVQHPADDPNTDIVTTHFEYHSMES-NLLKLDMLGHDDPTMIRMLEDLTGV 1058

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKGTL--------GIFQLESSGMRQALEGMQPDCIE 641
              R               +   L               I +  +S +R  LE   P   +
Sbjct: 1059 NARTDIPLDDKKTMSLFTSSEELGFVDDPVLGPTGAVAIPEFGTSFVRGMLEDTSPSEFD 1118

Query: 642  DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
             +I L        +      +   N    +                 I  ++ +  +  +
Sbjct: 1119 ILIRLSGFSHGTDVWLGNAKDLIVNQGIPV--------------GQAIGCRDDI-MLFLI 1163

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
              G     +  +  ++ K          E         G+      +  ++      Y F
Sbjct: 1164 SCGMPEKRSFKIMESVRKGR-----GLPEGAEDEMKAAGVPDWYIGSCKKI-----KYLF 1213

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC--------------Q 807
             K+HA AY +++++ AW K H P+ F AA  ++     ++                   +
Sbjct: 1214 PKAHAVAYVMMAFRIAWFKVHRPLAFYAAYFSIRAKAFDETYMCRGMDVVKAKMKEIKAK 1273

Query: 808  DARQFNIQIMPPSVNTPCVDF-----------------------KVGDNRIYYSLAAIKG 844
            D     ++    +    C +F                       K  D  +    +AI G
Sbjct: 1274 DKEATAVEQDMLTTLEVCYEFYLRGFTFEHVDLYKSHAINFIFSKTNDKALIPPFSAIPG 1333

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +G T A  IME    K F S+E+F       K+++  +E L  AGA+D  
Sbjct: 1334 LGETAAWSIMEQREGKEFISVEEFS--AACPKVSKTHIELLKAAGAMDGM 1381



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++       ++ +       AIAITD     S  +    A    I+ + 
Sbjct: 284 VELHLHTTMSSMDALTPTKAVVKRAEGWGHRAIAITDHGVAQSFPDAWHAAK--NIKVLY 341

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           G +       + ++   G+        +V  
Sbjct: 342 GVEAYYINDVDDRVVVHGEQEQDFTGEVVCF 372


>gi|260662302|ref|ZP_05863198.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            fermentum 28-3-CHN]
 gi|260553685|gb|EEX26577.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            fermentum 28-3-CHN]
          Length = 1447

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 143/905 (15%), Positives = 292/905 (32%), Gaps = 172/905 (19%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            +      N  MT+ G         + +L +T  G + L +LVS    ++   +  RI  S
Sbjct: 596  VTYVDDLNKHMTDNGAYRHARPFHVTILAATQAGLKNLYKLVSLSN-VEYFARVPRIPRS 654

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------ 188
             L     EGL++ T  + G +  A        A++    +        Y+ +Q       
Sbjct: 655  VLNRY-REGLLLGTACADGEVFTAMMQKGYGEAKRLAEFYD-------YIEVQPKPNYAP 706

Query: 189  --------HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     + +       +V+L      P+VAT ++ +++ ED     +L+        
Sbjct: 707  LLESGVITDQAHLEDILKNMVKLGSALNKPVVATGDAHYINPEDAIYRKILINSQGGANP 766

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              +   R        +    +  F     A +  V+     + ++      +   +    
Sbjct: 767  LNRT-ERPDVHFRTTDEMLDLFSFLGEDVAKQIVVDNTHLVADMVDDGIRPVKAGLYPPH 825

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  E E++++     +              Q  + R++ ELN I    FS ++LI 
Sbjct: 826  M---EGAEQEIQDRTWTTAKEWYGDPL------PQLVKDRVELELNSIVSNGFSVHYLIA 876

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               +  + K+   VG  RGS   SV A    IT+++PL                      
Sbjct: 877  QRLVAKSTKDGYLVG-SRGSVGSSVVATLSGITEVNPLPPHYRCPNCQYSHFYTKGEYSS 935

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + F+ FL      +PD D++F  D +     Y++  +G
Sbjct: 936  GFDLPDKDCPKCGTKMIGDGHDIPFQTFLGFKGNKVPDIDLNFSGDYQPIAHNYMKVLFG 995

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
               V +  T G++  K A   V                            +A   D   +
Sbjct: 996  ENNVYRAGTIGTVADKTAYGYV----------------------------KAYERDKEVQ 1027

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVRSD---LP 554
                 +  +      +    G+ R    H AGI+I      +    P+            
Sbjct: 1028 FRGAEEDRL------ASGATGVKRTTGQHPAGIIIVPDDMEIYDFTPVQYPADDQSAAWE 1081

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT 614
             T F+   I    ++K D LG    T+++       Q    ++   IP DD     L ++
Sbjct: 1082 TTHFDFHSIHD-NILKMDILGHDDPTMIR-----ALQDLSGINPQSIPMDDPGVMSLFSS 1135

Query: 615  KGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
               LG+   Q+ S      L       +  +   +    P     ++  +   +G    +
Sbjct: 1136 PEALGVTEEQINSKTGTLGLPEFGTRFVRGM---LEDTHPQNYSQLLQISGLSHGTGVWL 1192

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
                 +      T   +I     +    +  G     +  +   + K      +     +
Sbjct: 1193 DNAQELIKNGTATIANVIGCRDNIMTDLIHYGLDSETSFQVMEHVRKGKGIPEE-----W 1247

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
                ++ G+ +    +  ++      Y F ++HAAAY +++ + A+ K ++P+ + AA  
Sbjct: 1248 QEKMTEVGVPQWYLDSCLKI-----KYMFPRAHAAAYVLMALRIAYFKVYFPLVYYAAFF 1302

Query: 793  TLEMDNVEKIKK---------------------------------FCQDARQFNIQIMPP 819
            ++  D+ + +                                      +  +   +    
Sbjct: 1303 SVRADDFDVVAMSHGKEAVKSAMQAITSKGNEATAKEKSLLTILELANEMLERGFKFKMV 1362

Query: 820  SVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
             +      D+ +  + +     AI G+G   A+ I+ A  +KPF S +D   R    K++
Sbjct: 1363 DIERSDATDWLIDGDTLIAPFRAIPGLGINVAKQIVAAREEKPFLSKQDLSER---GKVS 1419

Query: 879  RRVLE 883
            + ++E
Sbjct: 1420 KTLIE 1424



 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA---CA--AG 66
           + L +H++ S ++   ++   + +     QPAIAITD   L    E    +       + 
Sbjct: 336 IELHLHTTMSTMDATNTIGEYVKQAIKWGQPAIAITDHAGLQGFPEAFSSSYDGKKDESK 395

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           I+ + G + ++       + N+   P    P ++ 
Sbjct: 396 IKMLYGVEANVVDDGVPLVYNENHLPLKGQPYVIF 430


>gi|227514713|ref|ZP_03944762.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
 gi|227086917|gb|EEI22229.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
          Length = 1447

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 143/905 (15%), Positives = 292/905 (32%), Gaps = 172/905 (19%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            +      N  MT+ G         + +L +T  G + L +LVS    ++   +  RI  S
Sbjct: 596  VTYVDDLNKHMTDNGAYRHARPFHVTILAATQAGLKNLYKLVSLSN-VEYFARVPRIPRS 654

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------ 188
             L     EGL++ T  + G +  A        A++    +        Y+ +Q       
Sbjct: 655  VLNRY-REGLLLGTACADGEVFTAMMQKGYGEAKRLAEFYD-------YIEVQPKPNYAP 706

Query: 189  --------HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                     + +       +V+L      P+VAT ++ +++ ED     +L+        
Sbjct: 707  LLESGVITDQAHLEDILKNMVKLGSALNKPVVATGDAHYINPEDAIYRKILINSQGGANP 766

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              +   R        +    +  F     A +  V+     + ++      +   +    
Sbjct: 767  LNRT-ERPDVHFRTTDEMLDLFSFLGEDVAKQIVVDNTHLVADMVDDGIRPVKAGLYPPH 825

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                +  E E++++     +              Q  + R++ ELN I    FS ++LI 
Sbjct: 826  M---EGAEQEIQDRTWTTAKEWYGDPL------PQLVKDRVELELNSIVSNGFSVHYLIA 876

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               +  + K+   VG  RGS   SV A    IT+++PL                      
Sbjct: 877  QRLVAKSTKDGYLVG-SRGSVGSSVVATLSGITEVNPLPPHYRCPNCQYSHFYTKGEYSS 935

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + F+ FL      +PD D++F  D +     Y++  +G
Sbjct: 936  GFDLPDKDCPKCGTKMIGDGHDIPFQTFLGFKGNKVPDIDLNFSGDYQPIAHNYMKVLFG 995

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
               V +  T G++  K A   V                            +A   D   +
Sbjct: 996  ENNVYRAGTIGTVADKTAYGYV----------------------------KAYERDKEVQ 1027

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVRSD---LP 554
                 +  +      +    G+ R    H AGI+I      +    P+            
Sbjct: 1028 FRGAEEDRL------ASGATGVKRTTGQHPAGIIIVPDDMEIYDFTPVQYPADDQSAAWE 1081

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT 614
             T F+   I    ++K D LG    T+++       Q    ++   IP DD     L ++
Sbjct: 1082 TTHFDFHSIHD-NILKMDILGHDDPTMIR-----ALQDLSGINPQSIPMDDPGVMSLFSS 1135

Query: 615  KGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
               LG+   Q+ S      L       +  +   +    P     ++  +   +G    +
Sbjct: 1136 PEALGVTEEQINSKTGTLGLPEFGTRFVRGM---LEDTHPQNYSQLLQISGLSHGTGVWL 1192

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
                 +      T   +I     +    +  G     +  +   + K      +     +
Sbjct: 1193 DNAQELIKNGTATIANVIGCRDNIMTDLIHYGLDSETSFQVMEHVRKGKGIPEE-----W 1247

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
                ++ G+ +    +  ++      Y F ++HAAAY +++ + A+ K ++P+ + AA  
Sbjct: 1248 QEKMTEVGVPQWYLDSCLKI-----KYMFPRAHAAAYVLMALRIAYFKVYFPLVYYAAFF 1302

Query: 793  TLEMDNVEKIKK---------------------------------FCQDARQFNIQIMPP 819
            ++  D+ + +                                      +  +   +    
Sbjct: 1303 SVRADDFDVVAMSHGKEAVKSAMQAITSKGNEATAKEKSLLTILELANEMLERGFKFKMV 1362

Query: 820  SVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
             +      D+ +  + +     AI G+G   A+ I+ A  +KPF S +D   R    K++
Sbjct: 1363 DIERSDATDWLIDGDTLIAPFRAIPGLGINVAKQIVAAREEKPFLSKQDLSER---GKVS 1419

Query: 879  RRVLE 883
            + ++E
Sbjct: 1420 KTLIE 1424



 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA---CA--AG 66
           + L +H++ S ++   ++   + +     QPAIAITD   L    E    +       + 
Sbjct: 336 IELHLHTTMSTMDATNTIGEYVKQAIKWGQPAIAITDHAGLQGFPEAFSSSYDGKKDESK 395

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           I+ + G + ++       + N+   P    P ++ 
Sbjct: 396 IKMLYGVEANVVDDGVPLVYNENHLPLKGQPYVIF 430


>gi|46907546|ref|YP_013935.1| DNA polymerase III PolC [Listeria monocytogenes str. 4b F2365]
 gi|47093944|ref|ZP_00231681.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
            monocytogenes str. 4b H7858]
 gi|254824621|ref|ZP_05229622.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194]
 gi|300765440|ref|ZP_07075422.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            monocytogenes FSL N1-017]
 gi|67460321|sp|Q720A2|DPO3_LISMF RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|46880814|gb|AAT04112.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
            monocytogenes serotype 4b str. F2365]
 gi|47017682|gb|EAL08478.1| DNA polymerase III, alpha chain, Gram-positive type [Listeria
            monocytogenes str. 4b H7858]
 gi|293593859|gb|EFG01620.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194]
 gi|300513877|gb|EFK40942.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            monocytogenes FSL N1-017]
 gi|328468603|gb|EGF39603.1| DNA polymerase III PolC [Listeria monocytogenes 1816]
          Length = 1444

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 154/918 (16%), Positives = 286/918 (31%), Gaps = 177/918 (19%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            +D     N  M               +   TA G + L +L++   + +   +  RI  S
Sbjct: 597  IDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYFYRVPRIPRS 655

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NLQ 187
             L+++  EGLI+ T  S G +  A      Q AEK    +   ++    +Y       L 
Sbjct: 656  QLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIERELV 714

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R           +V++      P+VAT N  +      + +  ++  +            
Sbjct: 715  RDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP-VDKIYRKILIHSQGGANPLNRAEL 773

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                    +       F    +A E  V  A      ++   PI       + D      
Sbjct: 774  PDVHFRTTDEMLKEFAFLGEEKAKEIVVTNANLVVDWMEDLKPIKDELYTPKIDG----A 829

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+E+RN + A       +         +    RL+ EL  I    F+  +LI    ++ +
Sbjct: 830  EDEVRNMSYAMAHQLYGE------KLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKS 883

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
              +   VG  RGS   S  A    IT+++PL                             
Sbjct: 884  LVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDGSVGSGFDLPDK 942

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  D +     Y +  +G + V + 
Sbjct: 943  DCPHCGTPYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFRA 1002

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V R  +   +   R  +                             
Sbjct: 1003 GTIGTVAEKTAFGYV-RNYERDMNMTIRGAE----------------------------- 1032

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVR---SDLPVTQFNMK 561
                +  +     G+ R    H  GI+       +    P+        S+   T F+  
Sbjct: 1033 ----IDRLVAGCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATDSEWKTTHFDFH 1088

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY-----------H 610
             I    ++K D LG    T ++   D          +     D  + +            
Sbjct: 1089 SIHD-NVLKLDILGHDDPTAIRMLQDLSG--IDPKTIPTDDPDVMKLFGSTESLGVKPAD 1145

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            + +  GTLGI +  +  +RQ LE  +P    +++ +  L                N +E 
Sbjct: 1146 IDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG-------TDVWLGNAEEL 1198

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            I +    +  ++     ++++         +  G   S A  +  ++ K      + ++ 
Sbjct: 1199 IKNKTCELPDVIGCRDDIMVFL--------IYQGLESSLAFKIMESVRKGKGLTEEMEEA 1250

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
               +               +    K   Y F K+HAAAY +++ + A+ K HYP+ F A 
Sbjct: 1251 MMANK----------VPLWYIESCKKIKYMFPKAHAAAYVLMAVRIAYFKVHYPLYFYAT 1300

Query: 791  SMTLEMDNVEKIKK---------------------------------FCQDARQFNIQIM 817
              T+  D+ +                                        +         
Sbjct: 1301 YFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHFQ 1360

Query: 818  PPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
               +     D F +  + +     AI  +GT  A+ I+ A  +  F S ED   R    K
Sbjct: 1361 KVDLYKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQR---GK 1417

Query: 877  LNRRVLESLVFAGALDCF 894
            +++ +++ +   G L+  
Sbjct: 1418 VSKTIIQYMDDQGCLEGL 1435



 Score = 82.1 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 342 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 401

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G + ++         N          
Sbjct: 402 GIEANLIDDGVPIAYNDQHIALEDAT 427


>gi|226223921|ref|YP_002758028.1| DNA polymerase III (alpha subunit) [Listeria monocytogenes Clip81459]
 gi|225876383|emb|CAS05092.1| Putative DNA polymerase III (alpha subunit) [Listeria monocytogenes
            serotype 4b str. CLIP 80459]
          Length = 1444

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 154/918 (16%), Positives = 286/918 (31%), Gaps = 177/918 (19%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            +D     N  M               +   TA G + L +L++   + +   +  RI  S
Sbjct: 597  IDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYFYRVPRIPRS 655

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NLQ 187
             L+++  EGLI+ T  S G +  A      Q AEK    +   ++    +Y       L 
Sbjct: 656  QLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIERELV 714

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R           +V++      P+VAT N  +      + +  ++  +            
Sbjct: 715  RDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP-VDKIYRKILIHSQGGANPLNRAEL 773

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                    +       F    +A E  V  A      ++   PI       + D      
Sbjct: 774  PDVHFRTTDEMLKEFAFLGEEKAKEIVVTNANLVVDWMEDLKPIKDELYTPKIDG----A 829

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+E+RN + A       +         +    RL+ EL  I    F+  +LI    ++ +
Sbjct: 830  EDEVRNMSYAMAHQLYGE------KLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKS 883

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
              +   VG  RGS   S  A    IT+++PL                             
Sbjct: 884  LVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDGSVGSGFDLPDK 942

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  D +     Y +  +G + V + 
Sbjct: 943  DCPHCGTSYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFRA 1002

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V R  +   +   R  +                             
Sbjct: 1003 GTIGTVAEKTAFGYV-RNYERDMNMTIRGAE----------------------------- 1032

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVR---SDLPVTQFNMK 561
                +  +     G+ R    H  GI+       +    P+        S+   T F+  
Sbjct: 1033 ----IDRLVAGCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATDSEWKTTHFDFH 1088

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY-----------H 610
             I    ++K D LG    T ++   D          +     D  + +            
Sbjct: 1089 SIHD-NVLKLDILGHDDPTAIRMLQDLSG--IDPKTIPTDDPDVMKLFGSTESLGVKPAD 1145

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            + +  GTLGI +  +  +RQ LE  +P    +++ +  L                N +E 
Sbjct: 1146 IDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG-------TDVWLGNAEEL 1198

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            I +    +  ++     ++++         +  G   S A  +  ++ K      + ++ 
Sbjct: 1199 IKNKTCELPDVIGCRDDIMVFL--------IYQGLESSLAFKIMESVRKGKGLTEEMEEA 1250

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
               +               +    K   Y F K+HAAAY +++ + A+ K HYP+ F A 
Sbjct: 1251 MMANK----------VPLWYIESCKKIKYMFPKAHAAAYVLMAVRIAYFKVHYPLYFYAT 1300

Query: 791  SMTLEMDNVEKIKK---------------------------------FCQDARQFNIQIM 817
              T+  D+ +                                        +         
Sbjct: 1301 YFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHFQ 1360

Query: 818  PPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
               +     D F +  + +     AI  +GT  A+ I+ A  +  F S ED   R    K
Sbjct: 1361 KVDLYKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQR---GK 1417

Query: 877  LNRRVLESLVFAGALDCF 894
            +++ +++ +   G L+  
Sbjct: 1418 VSKTIIQYMDDQGCLEGL 1435



 Score = 82.1 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 342 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 401

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G + ++         N          
Sbjct: 402 GIEANLIDDGVPIAYNDQHIALEDAT 427


>gi|296329433|ref|ZP_06871922.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum
            ATCC 23726]
 gi|296153442|gb|EFG94272.1| DNA polymerase III PolC [Fusobacterium nucleatum subsp. nucleatum
            ATCC 23726]
          Length = 1454

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 154/894 (17%), Positives = 308/894 (34%), Gaps = 157/894 (17%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS-----G 153
            I++LV T +G + +  LVS  ++   G +  RI  S L E   EGLI+ +  ++     G
Sbjct: 617  IMVLVKTQDGLKNMYRLVSEAHIKYFGNKKARIPKSVLTE-NREGLIIGSSLTAHFMNIG 675

Query: 154  PIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYVNLQ------RHRGYDR--YRESQVVQL 203
             +   +  +  +  E+    +   +L     Y  L           Y+           L
Sbjct: 676  ELADLYLRHDLEKLEEAAKFYDYIELLPKSTYNELIEKDGTGALGSYEEVEKMNKYFYDL 735

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                 + + A++N  +L E +     +L+  +    V    +  +    Y +   EM+  
Sbjct: 736  GKRLGILVTASSNVHYLDENEDIIRSILLYGSG--TVYNSRQYSINNGFYFRTTDEMLQE 793

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            FS L +     V +    + I  +    +    E       +  E  +R           
Sbjct: 794  FSYLGDEKAKEV-VITNTNKIADMIESGIKPIPEGFYPPKMENAEEIVRTMTYEKAYRIY 852

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                            RL+ ELN I    FS  +L     ++ +  N   VG  RGS   
Sbjct: 853  GDPL------PNIVSARLERELNAIINNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGS 905

Query: 384  SVTAYALTITDIDPLR-----------------------------------------FSL 402
            S+ A+ + IT+++ L                                          +S+
Sbjct: 906  SLVAFMMGITEVNALYPHYICDNSECKYSEFIEREGVGIDLPDKICPKCGAKLRKDGYSI 965

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE F+      +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V 
Sbjct: 966  PFEVFMGFKGDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAEAYVR 1025

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            +                              +D+     R     + RL + ++K     
Sbjct: 1026 K----------------------------YFEDNNLNAVRAEIIRLGRLCQGAKKTT--- 1054

Query: 523  RHASTHAAGIVIGDR--PLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLK 577
                 H  G+VI  +   + +  P+ R    +      T ++   +++  L+K D LG  
Sbjct: 1055 ---GQHPGGMVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDE-QLVKLDILGHD 1110

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGM 635
              T ++     L Q    +++  IP  D +T  + ++  +LG+   Q+ +      +   
Sbjct: 1111 DPTTIK-----LLQEYTNIEIKDIPLADKDTLKIFSSTESLGVTPEQIGTEIGTYGIPEF 1165

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
                +  +   +   RP     +V  +   +G    ++         + T   II     
Sbjct: 1166 GTGFVRQM---LIDTRPTTFAELVRISGLSHGTNVWLNNAQEFVRNGQATLSQIITVRDD 1222

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            +    +  G   S++  +   + K   ++  +  E++ +   +  +      +   +   
Sbjct: 1223 IMNYLIDQGLDNSDSFKIMEFVRKGKPKKEPENWEKYSAMMKEKNVPDWYIESCRRI--- 1279

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK-------------- 801
              +Y F K HA AY +++ + A+ K H P+ F AA ++ + D+ +               
Sbjct: 1280 --EYMFPKGHAVAYVMMAMRIAYFKVHQPLAFYAAFLSRKADDFDMEVMSRGILAKQKLE 1337

Query: 802  -----------------IKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIK 843
                             I +   +     ++++P  +       F + D +I   L  I 
Sbjct: 1338 ELSKEPKLDPKKKNEQAICEIVVELEARGLKLLPVDIYLSDGKKFTIEDGKIRIPLIGIN 1397

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            G+G      I++   +  F S+ED   R    K+ + V++ L   GA+     +
Sbjct: 1398 GLGGAVIDAIVKEREEGKFISVEDLKRRT---KIQQPVVDKLKNIGAISSLSET 1448



 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
           V L  H+  S + G   + +I+ +       AIAITD + + S     + A         
Sbjct: 336 VELHAHTKMSEMVGVTDVEDIIKRAKEYGHKAIAITDYSVVHSYPAAFKTAKKFSTDEEK 395

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           ++ I GC++ +   +   +TN           +V 
Sbjct: 396 MKAIFGCEMYMIDDEAPMVTNPKDKKIDDEEFVVF 430


>gi|260494375|ref|ZP_05814506.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium
            sp. 3_1_33]
 gi|260198521|gb|EEW96037.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium
            sp. 3_1_33]
          Length = 1449

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 154/894 (17%), Positives = 308/894 (34%), Gaps = 157/894 (17%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS-----G 153
            +++LV T  G + +  LVS  ++   G +  RI  S L E   EGLI+ +  ++     G
Sbjct: 612  VMVLVKTQAGLKNMYRLVSEAHIKYFGNKKARIPKSVLIE-NREGLIIGSSLTAHFMNTG 670

Query: 154  PIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYVNLQ------RHRGYDR--YRESQVVQL 203
             +   +  +  +  E+    +   +L     Y  L           Y+           L
Sbjct: 671  ELVDLYLRHDLEKLEEAAKFYDYIELLPKSTYNELIEKDGTGALGSYEEVEKMNKYFYDL 730

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                 + + A++N  +L E +     +L+  +    V    +  +    Y +   EM+  
Sbjct: 731  GKRLGILVTASSNVHYLDENEDIIRSILLYGSG--TVYNSRQYSINNGFYFRTTDEMLKE 788

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            FS L E     V +    + I  +    +    E       +  E  +++          
Sbjct: 789  FSYLGEDEAKEV-VITNTNKISDMIESEIRPIPEGFYPPKMENAEEIVKSMTYEKAYRIY 847

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                       +    RL+ ELN I    FS  +L     ++ +  N   VG  RGS   
Sbjct: 848  GNPL------PEIVSARLERELNAIINNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGS 900

Query: 384  SVTAYALTITDIDPLR-----------------------------------------FSL 402
            S+ A+ + IT+++ L                                          +S+
Sbjct: 901  SLVAFMMGITEVNALYPHYICDNPECKYSEFIEKEGVGIDLPDKICPKCGAKLRKDGYSI 960

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE F+      +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V 
Sbjct: 961  PFEVFMGFKGDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAEAYVR 1020

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            +                              +D+     R     + RL + ++K     
Sbjct: 1021 K----------------------------YFEDNNLNAVRAEIIRLGRLCQGAKKTT--- 1049

Query: 523  RHASTHAAGIVIGDR--PLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLK 577
                 H  G+VI  +   + +  P+ R    +      T ++   +++  L+K D LG  
Sbjct: 1050 ---GQHPGGMVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDE-QLVKLDILGHD 1105

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGM 635
              T ++     L Q    +++  IP  D +T  + ++  +LG+   Q+ +      +   
Sbjct: 1106 DPTTIK-----LLQEYTNMEIKDIPLADKDTLKIFSSTESLGVTPEQIGTEIGTYGIPEF 1160

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
                +  +   +   RP     +V  +   +G    ++         + T   II     
Sbjct: 1161 GTGFVRQM---LIDTRPTTFAELVRISGLSHGTNVWLNNAQEFVRNGQATLSQIITVRDD 1217

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            +    +  G   S+A  +   + K   ++  +  E++ +   +  +      +   +   
Sbjct: 1218 IMNYLIDQGLDNSDAFKIMEFVRKGKPKKEPENWEKYSAMMKEKNVPDWYIESCRRI--- 1274

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK-------------- 801
              +Y F K HA AY +++ + A+ K H P+ F AA ++ + D+ +               
Sbjct: 1275 --EYMFPKGHAVAYVMMAMRIAYFKVHQPLAFYAAFLSRKADDFDMEFMSRGILAKQKLE 1332

Query: 802  -----------------IKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIK 843
                             I +   +     I+++P  +       F + D +I   L  I 
Sbjct: 1333 ELSKEPKLDPKKKNEQAICEIVVEMEARGIELLPVDIYLSDGKKFTIEDGKIRIPLIGIN 1392

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            G+G      I++   +  F S+ED   R   ++    V++ L   GA+     +
Sbjct: 1393 GLGGAVIDAIVKEREEGKFISVEDLKRRTKMQQ---PVVDKLKNIGAISSLSET 1443



 Score = 79.4 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
           V L VH+  S + G   + +I+ +       AIAITD   + S     + A         
Sbjct: 331 VELHVHTKMSEMVGVTDVEDIIKRAKEYGHKAIAITDYAVVHSYPAAFKTAKKLSTDEEK 390

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           ++ I GC++ +   +   +TN           +V 
Sbjct: 391 MKAIFGCEMYMIDDEAPMVTNPKDKKIDDEEFVVF 425


>gi|229824076|ref|ZP_04450145.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271]
 gi|229786430|gb|EEP22544.1| hypothetical protein GCWU000282_01380 [Catonella morbi ATCC 51271]
          Length = 1435

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 139/911 (15%), Positives = 287/911 (31%), Gaps = 178/911 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N ++               L+    EG + L +L+S    +    +  RI  S L +   
Sbjct: 596  NEQVGKGDSYKQARPFHATLIAKNQEGLKDLFKLISASN-VQYFFREPRIPRSLLTKY-R 653

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NLQRHRGYDR 194
            + L++ T  S+G +  A        AEK +  +   +L    +Y       L R      
Sbjct: 654  DNLLVGTACSNGEVFTAMMQKGYDEAEKLVDFYDYIELQPKSVYGPLIETELIRSEADLE 713

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
                ++V+L       +VAT +  +L  +D    ++L+      + + +           
Sbjct: 714  TIMKEMVRLGQDKNKLVVATGDVHYLEPKDAIYREILL--RSMKINANRTLHLPPVHFRT 771

Query: 255  KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
             +       F     A E  +   ++ + +++    I  +               E+   
Sbjct: 772  TDEMMAEFDFLGRDLAYELVITNPQKIADMVEEVEVIKDKLYTPNIPG----ANEEITEL 827

Query: 315  AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
            +                   +   +R++ EL  I    F+  +LI    +  +  +   V
Sbjct: 828  SYTRARELYGDPL------PEIVEKRIEKELKSIIGNGFAVIYLISQKLVHKSVSDGYLV 881

Query: 375  GPGRGSGAGSVTAYALTITDIDPLR----------------------------------- 399
            G  RGS   S+ A    IT+++PL                                    
Sbjct: 882  G-SRGSVGSSLVATLTGITEVNPLAPHYYCPNCQYSEFIADGSVGSGYDLPAKDCPHCGH 940

Query: 400  ------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ 453
                    + FE FL      +PD D++F    +     Y +  +G + V +  T  ++ 
Sbjct: 941  ALNKDGQDIPFETFLGFYGDKVPDIDLNFSGAYQPRAHAYTKELFGEDYVYRAGTISTVA 1000

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
             + A   V   L++    +                                         
Sbjct: 1001 ERTAFGYVKGYLEVAQQFL----------------------------------PQAEKER 1026

Query: 514  ISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGL 568
            +++ +EG+ R    H  GI+       +    P+         +   T F+   I    +
Sbjct: 1027 LAKGIEGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADEVTAEWRTTHFDFHSIHD-NV 1085

Query: 569  IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY-----------HLLTTKGT 617
            +K D LG    T+++   D          +     D  + +            + +  GT
Sbjct: 1086 LKLDILGHDDPTVIRMLQDLSG--IDPKTIPPTDPDVMKIFSSPEVLGVTPEQIFSKTGT 1143

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            LGI +  +  +R  LE  +P    +++ +  L                N +E I +    
Sbjct: 1144 LGIPEFGTGFVRGMLEESKPATFAELLQISGLSHG-------TDVWLGNAQELIKNKIAP 1196

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            +  ++     +++          +  G     A  +  ++ K      D     + +   
Sbjct: 1197 LAKVIGCRDDIMVTL--------IYYGLEDGLAFKIMESVRKGKGIPED-----WQAEMR 1243

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
               + +    +  ++      Y F K+HAAAY +++ + A+ K H P+ + AA  ++  D
Sbjct: 1244 AKKVPEWYIDSCLKI-----KYMFPKAHAAAYVLMALRVAYFKVHMPIMYYAAYFSVRAD 1298

Query: 798  NVEKIKK---------------------------------FCQDARQFNIQIMPPSVNTP 824
            + + +                                      +  +  +     S+   
Sbjct: 1299 DFDIVAMHQGKEMVKRRIREINDKGFDASVKDKNLLTVLELANEMLERGLSFQMISLEKS 1358

Query: 825  CVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
              D F +  N +     A+ G+G   A+ I++A  + PF S ED   R    K+++ +L+
Sbjct: 1359 DADCFIIEGNSLIPPFRAVPGLGANVAQQIIKARQEAPFLSKEDLQKR---GKVSKTILD 1415

Query: 884  SLVFAGALDCF 894
             L   G L+  
Sbjct: 1416 YLSEQGVLNGL 1426



 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA---LEFSQKACAAGIQ 68
           + L +HS+ S ++    + +++ + AA    AIAITD      A    +        GI+
Sbjct: 334 IELHLHSNMSQMDATNKVGDLIAQAAAWGHSAIAITDH---AGAQAFPDAYAAGKKHGIK 390

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
            + G + ++         N           +V 
Sbjct: 391 VLYGIEANVVNDGEPIAYNPQAIDLDLATYVVF 423


>gi|19703626|ref|NP_603188.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
            nucleatum ATCC 25586]
 gi|19713736|gb|AAL94487.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
            nucleatum ATCC 25586]
          Length = 1454

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 154/894 (17%), Positives = 308/894 (34%), Gaps = 157/894 (17%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS-----G 153
            I++LV T +G + +  LVS  ++   G +  RI  S L E   EGLI+ +  ++     G
Sbjct: 617  IMVLVKTQDGLKNMYRLVSEAHIKYFGNKKARIPKSVLTE-NREGLIIGSSLTAHFMNIG 675

Query: 154  PIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYVNLQ------RHRGYDR--YRESQVVQL 203
             +   +  +  +  E+    +   +L     Y  L           Y+           L
Sbjct: 676  ELADLYLRHDLEKLEEAAKFYDYIELLPKSTYNELIEKDGTGALGSYEEVEKMNKYFYDL 735

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                 + + A++N  +L E +     +L+  +    V    +  +    Y +   EM+  
Sbjct: 736  GKRLGILVTASSNVHYLDENEDIIRSILLYGSG--TVYNSRQYSINNGFYFRTTDEMLQE 793

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            FS L +     V +    + I  +    +    E       +  E  +R           
Sbjct: 794  FSYLGDEKVKEV-VITNTNKIADMIESGIKPIPEGFYPPKMENAEEIVRTMTYEKAYRIY 852

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                            RL+ ELN I    FS  +L     ++ +  N   VG  RGS   
Sbjct: 853  GDPL------PNIVSARLERELNAIINNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGS 905

Query: 384  SVTAYALTITDIDPLR-----------------------------------------FSL 402
            S+ A+ + IT+++ L                                          +S+
Sbjct: 906  SLVAFMMGITEVNALYPHYICDNSECKYSEFIEREGVGIDLPDKICPKCGAKLRKDGYSI 965

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE F+      +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V 
Sbjct: 966  PFEVFMGFKGDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAEAYVR 1025

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            +                              +D+     R     + RL + ++K     
Sbjct: 1026 K----------------------------YFEDNNLNAVRAEIIRLGRLCQGAKKTT--- 1054

Query: 523  RHASTHAAGIVIGDR--PLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLK 577
                 H  G+VI  +   + +  P+ R    +      T ++   +++  L+K D LG  
Sbjct: 1055 ---GQHPGGMVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDE-QLVKLDILGHD 1110

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGM 635
              T ++     L Q    +++  IP  D +T  + ++  +LG+   Q+ +      +   
Sbjct: 1111 DPTTIK-----LLQEYTNIEIKDIPLADKDTLKIFSSTESLGVTPEQIGTEIGTYGIPEF 1165

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
                +  +   +   RP     +V  +   +G    ++         + T   II     
Sbjct: 1166 GTGFVRQM---LIDTRPTTFAELVRISGLSHGTNVWLNNAQEFVRNGQATLSQIITVRDD 1222

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            +    +  G   S++  +   + K   ++  +  E++ +   +  +      +   +   
Sbjct: 1223 IMNYLIDQGLDNSDSFKIMEFVRKGKPKKEPENWEKYSAMMKEKNVPDWYIESCRRI--- 1279

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK-------------- 801
              +Y F K HA AY +++ + A+ K H P+ F AA ++ + D+ +               
Sbjct: 1280 --EYMFPKGHAVAYVMMAMRIAYFKVHQPLAFYAAFLSRKADDFDMEVMSRGILAKQKLE 1337

Query: 802  -----------------IKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIK 843
                             I +   +     ++++P  +       F + D +I   L  I 
Sbjct: 1338 ELSKEPKLDPKKKNEQAICEIVVELEARGLELLPVDIYLSDGKKFTIEDGKIRIPLIGIN 1397

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            G+G      I++   +  F S+ED   R    K+ + V++ L   GA+     +
Sbjct: 1398 GLGGAVIDAIVKEREEGKFISVEDLKRRT---KIQQPVVDKLKNIGAISSLSET 1448



 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
           V L  H+  S + G   + +I+ +       AIAITD + + S     + A         
Sbjct: 336 VELHAHTKMSEMVGVTDVEDIIKRAKEYGHKAIAITDYSVVHSYPAAFKTAKKFSTDEEK 395

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           ++ I GC++ +   +   +TN           +V 
Sbjct: 396 MKAIFGCEMYMIDDEAPMVTNPKDKKIDDEEFVVF 430


>gi|289424040|ref|ZP_06425828.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Peptostreptococcus anaerobius 653-L]
 gi|289155559|gb|EFD04236.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Peptostreptococcus anaerobius 653-L]
          Length = 1440

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 157/945 (16%), Positives = 304/945 (32%), Gaps = 215/945 (22%)

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               GI           + D  ++  +            +      G + L +L++  ++ 
Sbjct: 589  KKKGIN---------KLSDVNRVYGKVDYEKLRPSHATIYAQNQTGLKHLYQLITDSHI- 638

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +    + RI  S L E   EGLI+ +  SSG +  A   + S+   +++L          
Sbjct: 639  EHLYGNPRILKSLLLEK-REGLIVGSACSSGELYNAVVRHKSEKEIEKILELYD------ 691

Query: 183  YVNLQRHR--------------GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
            ++ +                     +    ++V+L   ++ P+VAT +   L  +D    
Sbjct: 692  FIEIMPLENNMYLVESGELKSVEELKEINKKLVKLGEQYDKPVVATGDVHMLDAKDAIYR 751

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARRCSFILQ 286
             ++             R   +   Y +   EM+  FS     +A E  V  +   + I +
Sbjct: 752  TII------KYSQGYGRKSKSERLYFRTTDEMLEEFSYLGKDKAYEVVVTNSNLIADIFE 805

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               PI         +      + ELR+           +             +RL+ ELN
Sbjct: 806  DIKPIPDETYPPRIEG----SDKELRSMCYEKARRIYGEPL------PDIVVKRLERELN 855

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------- 399
             I    ++  ++I    +  +  +   VG  RGS   S  A    IT+++PL        
Sbjct: 856  SIIGNGYAVMYIIANKLVAKSLSDGYLVG-SRGSVGSSFAATMSDITEVNPLPAHYVCPN 914

Query: 400  ------------------------------------FSLLFERFLNPDRMSMPDFDIDFC 423
                                                  + FE FL  +    PD D++F 
Sbjct: 915  PDCKHSEFFAIGEWGSGVDLPPKKCPDCGTQMIKDGHDIPFEVFLGFEGDKEPDIDLNFS 974

Query: 424  QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
               +  + +Y +  +G     +  T G+++ K A   V +  +     +D     +    
Sbjct: 975  GTYQPTIHKYTEELFGEGYTFRAGTIGTVKDKTAYGYVKKYSE--EQFLDMTAAEMDW-- 1030

Query: 484  AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQ 541
                                          +S+   G+ R +  H  G+  V   + +  
Sbjct: 1031 ------------------------------LSKGCTGVKRTSGQHPGGVMVVPDYKDIHD 1060

Query: 542  LVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
              P+          +  T F+   I    ++K D LG    T+++     + +    + +
Sbjct: 1061 FTPVQYPANDKECGVKTTHFDYHSI-SGRILKLDILGHDGPTIIR-----MLEDMTGIKI 1114

Query: 599  SLIPFDDHETYHLLTTKGTLG--------------IFQLESSGMRQALEGMQPDCIEDII 644
            + IP DD ET  L T+   LG              I +  +   RQ L   +P     ++
Sbjct: 1115 TDIPLDDPETMSLFTSTKALGVTEEDIGTPVGSLAIPEFGTKFTRQMLIDTKPTTFAALV 1174

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
             +  L                     + +   L+   +   + VI  ++ +     +  G
Sbjct: 1175 RISGLSH--------------GTDVWVNNAQDLVRANVIGIKDVISTRDDI-MNYLIFKG 1219

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
                 A  +   + K    + +     FI     N +      +  ++      Y F K+
Sbjct: 1220 LRPKLAFTIMENVRKGRGLKPE-----FIEEMKANNVPDWYIGSCQKI-----KYMFPKA 1269

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------------------ 800
            HA AY + S++ A+ K +YP  F A   T ++++ +                        
Sbjct: 1270 HAVAYVMTSFRIAYCKVNYPEAFYATYFTTKVEDFDVDLVTRGLDAVRAKMERIRELGNS 1329

Query: 801  ---------KIKKFCQDARQFNIQIMPPSVNT-PCVDFKV-GDNRIYYSLAAIKGVGTTT 849
                      I +   +     I++    +      DF++ GD +I   + A++G+G   
Sbjct: 1330 STAKENNQYTILEVVVEMLCRGIEMEKVDIYRSHPTDFQLDGDKKILPPMVALQGMGENA 1389

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            A  I        F S ED   R    K+++ V+E L   G+LD  
Sbjct: 1390 ALSIAREREKGAFLSKEDLIKRT---KVSKTVVEKLSEHGSLDGM 1431



 Score = 99.9 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++G + +  ++ + A+    AIAITD   + +  +        GI+ I 
Sbjct: 341 VELHAHTQMSSMDGMVPVGELVSRAASWGHKAIAITDHGVVQAFPDAMNAGKKNGIKIIY 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +   D   + N          
Sbjct: 401 GVEAYLVDDDTDTIVNANDRDLDQTF 426


>gi|227890631|ref|ZP_04008436.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741]
 gi|227867569|gb|EEJ74990.1| DNA polymerase III PolC [Lactobacillus salivarius ATCC 11741]
          Length = 1451

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 138/893 (15%), Positives = 285/893 (31%), Gaps = 165/893 (18%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            Q+      N  +              ++L  T EG + L +L S   ++    +  R+  
Sbjct: 600  QILYHDDFNKHVGENDAYKHEHPSHAIILAKTQEGLKNLFKLTSES-MVKYFYRVPRVPR 658

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
            S L++   EGLI+ +  + G +  A       +A+++   +        Y+ +Q    Y+
Sbjct: 659  SILEKY-REGLIVGSACADGEVFTAMMQKGYTIAKQKAEFYD-------YLEVQPKPLYE 710

Query: 194  --------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
                              + +V+LA+  + P+VAT +  F+++ED     +L+       
Sbjct: 711  PLLEQELVKDNDNLEEIITNMVKLAHELDKPIVATGDVHFMNKEDAIYRKILIHSQAGAN 770

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
               + +          +       F     A E  V    +    +    P+  +    +
Sbjct: 771  PLNRLKKLPDAHFRTTDEMLEEFSFLGEDIAKEIVVTNPNKLVDEISEITPVKDKLYTPK 830

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +      E ++ +  +                  +  ++RLD EL  +    FS  +LI
Sbjct: 831  MEG----AEQDIHDLTMNRAHAWYGD------TLPEIVQKRLDKELKSVIGNGFSVIYLI 880

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------- 399
                +  + K+   VG  RGS   S+ A    IT+++PL                     
Sbjct: 881  SQKLVYKSNKDGYLVG-SRGSVGSSLVATMTGITEVNPLPPHYRCPKCKWTHFYEKGEYG 939

Query: 400  ---------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
                                   + FE FL      +PD D++F  D +     Y +  +
Sbjct: 940  SGYDLPDKDCPNCGTELIKDGQDIPFETFLGFKGNKVPDIDLNFSGDYQPIAHNYTKVLF 999

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G   V +  T G++  K A   V +A +    Q  R  +                     
Sbjct: 1000 GENNVYRAGTIGTVADKTAYGYV-KAYERDTEQNFRGAE--------------------- 1037

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRSDLPVT 556
                        +  +++   G+ R    H AGI  V     +    P+      D    
Sbjct: 1038 ------------IDRLAKGATGVKRTTGQHPAGILVVPDYMDIYDFTPIQYPA--DDLTA 1083

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             +     +   +   + L L  L     ++  + Q    +D   IP DD     L +   
Sbjct: 1084 AWRTTHFDFHSIH-DNILKLDILGHDDPTMIRMLQDLSGIDPKTIPTDDPGVMALFSGTD 1142

Query: 617  TLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
             LG+   +++SS     +       +  ++       P     ++  +   +G +  +  
Sbjct: 1143 ILGVTPEEIQSSTGTLGVPEFGTRFVRGMLEET---HPKTFAELLKISGLSHGTDVWLGN 1199

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
               +      T   +I     + +  +  G    +A  +   + K      +     + +
Sbjct: 1200 AEELIKNGTVTMPDVIGCRDDIMMDLIHMGVESDKAFKIMEHVRKGRGIPDE-----WQA 1254

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
                  + +       ++      Y F K+HAAAY +++ + A+ K +YP+ + AA  ++
Sbjct: 1255 DMRAADVPEWYIGACLKI-----KYMFPKAHAAAYVLMALRIAYFKVYYPLVYYAAYFSV 1309

Query: 795  EMDNVEKIKK---------------------------------FCQDARQFNIQIMPPSV 821
              D+ + +                                      +  +         +
Sbjct: 1310 RADDFDLVSMSRGKEAVKNAMELINSKGNEATTKEKNLLTVLEIANEMLERGFDFSMVDI 1369

Query: 822  NTP-CVDFKVGDNR--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            N     ++ + ++   +     AI G+G   A+ I+ A  ++ F S ED   R
Sbjct: 1370 NKSDAQNWTIQEDGRTLLAPFTAIPGLGLNVAKQIVAAREEQEFISKEDLSKR 1422



 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S+++   S+   + K A     AIAITD   L +  E         ++ + 
Sbjct: 347 VELHLHSNMSMMDATNSITEYVSKAAEWGHKAIAITDHGTLQAFPEAHAAGQKNNVKILY 406

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          ++ 
Sbjct: 407 GVEANIVDDGVPIAYNEQHKNLRDATYVIF 436


>gi|227544953|ref|ZP_03975002.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|300910016|ref|ZP_07127476.1| DNA polymerase III PolC [Lactobacillus reuteri SD2112]
 gi|227185064|gb|EEI65135.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|300892664|gb|EFK86024.1| DNA polymerase III PolC [Lactobacillus reuteri SD2112]
          Length = 1443

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 140/911 (15%), Positives = 285/911 (31%), Gaps = 172/911 (18%)

Query: 55   ALEFSQKACA-AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
              +F + A A   ++        +D  +   M             + +   T  G + L 
Sbjct: 582  LYKFLKDAEARYDVK-------YVDDLNKH-MEENNAYRHARPFHVTIFAQTQAGLKNLF 633

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +LVS    ++   +  RI  + L +   EGL++ T  SSG +  A        A ++   
Sbjct: 634  KLVSLSN-VEYFYRVPRIPRTVLTKY-REGLLLGTACSSGEVFTAMMEKGYDQALEKARY 691

Query: 174  FKKLFGDRLYVNLQR----------HRGYDRYRESQVV----QLAYTHELPLVATNNSLF 219
            +        ++ +Q           H   D      ++    +L    E  +VAT +  +
Sbjct: 692  YD-------FIEVQPKPNYAPLLEQHVIADEDHLEDILKNMVKLGDELEKTVVATGDVHY 744

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            L   D     +L+          +   R        +       F    +A E  VE + 
Sbjct: 745  LDPHDGIYRKILINSQGGANPLNRT-ERPEVHFRTTDEMLNEFAFLGEEKAHELVVENSN 803

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
            + +  +      +    +K      K  E E++++                    Q  + 
Sbjct: 804  KIAAEIDD---NIRPVKDKLYPPHMKGAEQEIQDRTWNTARKWYGDPL------PQLVQD 854

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            R++ ELN I +  FS ++LI    +  + K+   VG  RGS   SV A    IT+++PL 
Sbjct: 855  RIELELNSIVKNGFSVHYLIAQRLVAKSNKDGYLVG-SRGSVGSSVVATLSGITEVNPLP 913

Query: 400  -----------------------------------------FSLLFERFLNPDRMSMPDF 418
                                                       + F+ FL      +PD 
Sbjct: 914  PHYRCPNCQFTHFYTQGEYSSGFDLPDKKCPKCGTLMVKDGHDIPFQTFLGFKGNKVPDI 973

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  D +     Y++  +G + V +  T G++  K A   V                 
Sbjct: 974  DLNFSGDYQPIAHNYMKVLFGEKNVFRAGTIGTVADKTAYGYV----------------- 1016

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD-- 536
                            +  FR+A            +++   G+ R    H AGI+I    
Sbjct: 1017 ---------KAYERDTEKEFRKAEED--------RLAKGATGVKRTTGQHPAGIIIVPDD 1059

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
              +    P+      D     +     +   +   + L +  L     ++    Q    +
Sbjct: 1060 MDIYDFTPVQYPA--DDQTAAWETTHFDFHSIH-DNILKMDILGHDDPTMIRALQDLSGI 1116

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            D   IP DD     L ++   LG+   Q++S      L       +  +   +    P  
Sbjct: 1117 DPQSIPMDDPGVMALFSSPKVLGVTEEQIQSKTGTLGLPEFGTRFVRGM---LEDTHPKN 1173

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
               ++  +   +G    +     +      T   +I     +    +  G     +  + 
Sbjct: 1174 YSQLLQISGLSHGTGVWLDNAQELIKQGIATIANVIGCRDNIMTDLIHYGMDSEISFQIM 1233

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
              + K      +     +     +  + +    +  ++      Y F ++HAAAY +++ 
Sbjct: 1234 EHVRKGRGIPDE-----WQEKMHEANVPQWYMDSCLKI-----KYMFPRAHAAAYVLMAL 1283

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKK------------------------------ 804
            + A+ K ++P+ +  A  ++  D+ + +                                
Sbjct: 1284 RIAYFKVYFPLVYYCAFFSVRADDFDVVAMSHGKDAVKQRMKEINDKGNDASAKEKNLLT 1343

Query: 805  ---FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                  +  +   +     +      D+ +  + +     A+ G+G   A+ I+ A  ++
Sbjct: 1344 ILELANEMLERGFKFKMVDIEKSDASDWLIDGDSLIAPFRAVPGLGLNVAKQIVAAREER 1403

Query: 861  PFDSLEDFCSR 871
            PF S ED   R
Sbjct: 1404 PFLSKEDLAER 1414



 Score = 87.2 bits (214), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++   S+  +  +      PAIA+TD  N+ +  E    A   GI+ + 
Sbjct: 340 VELHTHTTMSQMDATNSITELATRAHKWGHPAIAVTDHGNVQAFPEAFSVAQKTGIKMLY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       + N+          ++ 
Sbjct: 400 GMEANVVDDGIPLVYNENHEELAHQTYVIF 429


>gi|166032729|ref|ZP_02235558.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC 27755]
 gi|166027086|gb|EDR45843.1| hypothetical protein DORFOR_02444 [Dorea formicigenerans ATCC 27755]
          Length = 1521

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 153/949 (16%), Positives = 302/949 (31%), Gaps = 182/949 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F Q     GI+        +D  ++    N           +++L     G   L  L
Sbjct: 634  VKFIQMLEERGIE-------TLDQMNHFGAHNAEAIRKMPSYHVIVLAKNDIGRVNLYTL 686

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +S+ +L +   +  R+  S + +   EGLI+ +   +G + +A     S     R++ F 
Sbjct: 687  ISKSHL-EYFGRQPRMPKSEVLKY-REGLIIGSACEAGELYQAILGEKSAERIARIVNFY 744

Query: 176  KLFGDRLYVNLQRHR-----------------GYDRYRESQVVQLAYTHELPLVATNNSL 218
                   Y+ +Q                       R    ++++L    + P+VAT +  
Sbjct: 745  D------YLEIQPLGNNRFMIDSDRVEKVQSEEDLREINREIIRLGERFDKPVVATCDVH 798

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            F+  ED E +  ++        + +  P                  +   +A E  ++  
Sbjct: 799  FMDPED-EVYRRIIMAGKGFKDADQQAPLYLHTTDEMLEEFEYLGSA---KAKEIVIDNP 854

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
               + +++  +P+ P        D  K     LR                      +   
Sbjct: 855  NMIADMVEKISPVRPDKCPPVIPDSDKT----LREICYNKAHSMYGDPL------PEIVT 904

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +RL+ ELN I    F+  ++I    +  + ++   VG  RGS   S  A    IT+++PL
Sbjct: 905  ERLERELNSIISNGFAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFVATMAGITEVNPL 963

Query: 399  R---------------------------------------------FSLLFERFLNPDRM 413
                                                          F + FE FL     
Sbjct: 964  SPHYYCPKCHYSDFESEEVRAYAGGCGWDMPDKECPVCKTRLVKDGFDIPFETFLGFKGN 1023

Query: 414  SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
              PD D++F  D +    +Y +  +G  +  +  T G+L  K A   V    +       
Sbjct: 1024 KEPDIDLNFSGDYQSNAHKYTEIIFGAGQTFRAGTIGTLADKTAFGYVKNYFE------- 1076

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
                                        R        +  I Q   G+ R    H  GI+
Sbjct: 1077 ---------------------------ERGTRKRTCEIDRIVQGCTGIRRSTGQHPGGII 1109

Query: 534  --IGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQK----- 584
                   ++   P+           +T           L+K D LG    T+++      
Sbjct: 1110 VLPHGEDINSFTPVQHPANDMTTDIITTHFDYHSIDHNLLKLDILGHDDPTMIKALEAYI 1169

Query: 585  ----SLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
                  +   +       + IP DD     L      LGI   +  G      G+     
Sbjct: 1170 SSPAMENEYNETDHPFVATDIPLDDQGVMSLFHDTSALGITPDDIGGCPVGCLGIPEFGT 1229

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            + +I +V   +P  + +++  +   +G +  ++    +    K T    I     +    
Sbjct: 1230 DFVIQMVVDTKPQTLSDLIRISGLSHGTDVWLNNAQELIKSGKATISTAICTRDDIMTYL 1289

Query: 701  LLSGYSLSEADVLRRAMGKKI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            +  G    E+  +   + K    +   K    +     ++ + +    +  ++      Y
Sbjct: 1290 INKGLDSEESFTIMERVRKGTVAKGKCKDWPEYKKDMLEHDVPEWYIGSCEKI-----KY 1344

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM--------------------------- 792
             F K+HAAAY +++Y+ A+ K +YP+ +  A                             
Sbjct: 1345 MFPKAHAAAYVMMAYRIAYCKVNYPLAYYGAYFGIRADAFSYEIMCQGKEKLQYYIDDYT 1404

Query: 793  ------TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGV 845
                  + +  +  K     Q+      + +P  +       F + D ++    ++I G+
Sbjct: 1405 RRSDSLSKKEQDTMKDMHIVQEMYARGYEFLPIDIYRAKATKFSIVDGKLMPPFSSIDGM 1464

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            G   A  + EA+ D P+ S +DF +R    K ++ V++ +   G L   
Sbjct: 1465 GEKAAEAVEEAAKDGPYLSKDDFRNRT---KASKTVVDYMADLGLLGDL 1510



 Score = 77.9 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 4/90 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--SQKACAAG--I 67
           V L  H+  S ++G   + +++ +       AIAITD   + +  +     +        
Sbjct: 389 VELHCHTKMSDMDGVSEVKDLVKRAHDWGHKAIAITDHGVVQAFPDANHYIETLDKDDPF 448

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           + I G +  +         N+         
Sbjct: 449 KVIYGVEGYLVDDLQDVAVNEKGQSLKGTY 478


>gi|28378678|ref|NP_785570.1| DNA polymerase III PolC [Lactobacillus plantarum WCFS1]
 gi|254556876|ref|YP_003063293.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1]
 gi|300768189|ref|ZP_07078094.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
            ATCC 14917]
 gi|308180817|ref|YP_003924945.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
            ST-III]
 gi|32469698|sp|Q88VK2|DPO3_LACPL RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|28271514|emb|CAD64419.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Lactobacillus
            plantarum WCFS1]
 gi|254045803|gb|ACT62596.1| DNA polymerase III PolC [Lactobacillus plantarum JDM1]
 gi|300494253|gb|EFK29416.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
            ATCC 14917]
 gi|308046308|gb|ADN98851.1| DNA polymerase III PolC [Lactobacillus plantarum subsp. plantarum
            ST-III]
          Length = 1437

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 143/917 (15%), Positives = 294/917 (32%), Gaps = 174/917 (18%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            Q+    Q N  M               L   T  G + L  ++S    ++   +  R+  
Sbjct: 590  QVQFHDQLNDHMNENAAYRHARPFHATLYAQTQAGLKNLFRIISLSN-VEYYYRVPRVPR 648

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
            S L +   +G+++ +  SSG +  A      + A ++   +        ++ +Q    Y 
Sbjct: 649  SVLNKY-RDGILVGSACSSGEVFTAMMQKGKEEARQKAGYYD-------FLEVQPKPAYS 700

Query: 194  --------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
                              S +V+L +   +P+ AT +  +L+ ED     +L+       
Sbjct: 701  ALIESGLIADTDHLEEIISNMVELGHEMNIPVAATGDVHYLNPEDKIYRKILIHSQPGNP 760

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +++ +RP       +  RS    +        E   E+       L     I+    +K 
Sbjct: 761  LNRTERP------DVHFRSTDEMLKDFDFLGTETAHEVVVDTPRALADQFEIVRPVKDKL 814

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                 K  E E+    +                  +  ++R+D EL  I    FS  +LI
Sbjct: 815  YTPRMKGAEAEIEKLTMDRAHAWYGNPL------PEIVQKRVDKELKSIIGNGFSVIYLI 868

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------- 399
                +  + K+   VG  RGS   S+ A    IT+++P+                     
Sbjct: 869  AQRLVFKSNKDGYLVG-SRGSVGSSIVATLSGITEVNPMPPHYRCPNCQYSHFYTNNEYG 927

Query: 400  ---------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
                                  ++ FE FL      +PD D++F  D +     Y +  +
Sbjct: 928  SGYDLPPKDCPECGTDMVRDGQNIPFETFLGFYGNKVPDIDLNFSGDYQPIAHNYTKVLF 987

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G + V +  T G++  K     V +A +   +Q  R  +                     
Sbjct: 988  GEKNVYRAGTIGTVADKTGYGYV-KAYERDTNQTLRSAE--------------------- 1025

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRSD---L 553
                        +  +++   G+ R    H AGI  V     +    P+           
Sbjct: 1026 ------------VDRLAKGTTGVKRTTGQHPAGIIVVPDYMDIYDFTPVQYPADDQSAAW 1073

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT 613
              T F+   I    ++K D LG    T+++     + Q    V    IP  D     + +
Sbjct: 1074 QTTHFDFHSIHD-NILKIDILGHDDPTMIR-----MLQDLSGVQPESIPPVDPHVMKIFS 1127

Query: 614  TKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
            +   LG+   Q+ S      +       +  ++       P   + ++  +   +G +  
Sbjct: 1128 SPEVLGVTEDQIFSKTGTLGIPEFGTRFVRGMLEET---HPSTFNELLQISGLSHGTDVW 1184

Query: 672  VSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKER 731
            +     +      T   +I     +    +  G     +  +   + K      +     
Sbjct: 1185 LGNAEELIKDGTVTLAEVIGCRDNIMTDLIHYGMESDMSFQIMEHVRKGRGIPDE----- 1239

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +        +      +  ++      Y F ++HAAAY +++ + A+ K ++P+ +  A 
Sbjct: 1240 WQQAMKDANVPDWYIESCLKI-----KYMFPRAHAAAYILMALRVAYFKVYFPLIYYTAY 1294

Query: 792  MTLEMDNVEKIKK---------------------------------FCQDARQFNIQIMP 818
             ++  D+ + +                                      +  +   +   
Sbjct: 1295 FSVRADDFDLVAMAHGKDAVKASMKAITDKGMDASAKEKNLLTVLELANEMLERGFKFSM 1354

Query: 819  PSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
              ++     D+ +  + +     A+ G+G   A+ I+ A ADKPF S ED   R    K+
Sbjct: 1355 VDLDKSDASDWLIDGDTLIAPFRAVPGLGLNVAKQIVAARADKPFLSKEDLSKR---GKV 1411

Query: 878  NRRVLESLVFAGALDCF 894
            ++ +++ +   G L   
Sbjct: 1412 SKSLIDFMTENGVLSDL 1428



 Score = 81.4 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S ++   S+++ + + A    PAIAITD +   +  E         I+ + 
Sbjct: 336 VELHLHSNMSQMDATNSVSDYVKQAAKWGHPAIAITDHSGAQAFPEAFAAGEKNNIKILY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           ++ 
Sbjct: 396 GVEANMVDDGVPIAYNDAHVDLKESTYVIF 425


>gi|323340059|ref|ZP_08080325.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644]
 gi|323092565|gb|EFZ35171.1| DNA polymerase III PolC [Lactobacillus ruminis ATCC 25644]
          Length = 1448

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 141/889 (15%), Positives = 288/889 (32%), Gaps = 157/889 (17%)

Query: 74   QLDIDMQDNLKM--TNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            Q DI   D+                   ++L  T +G + L +L S   +++   +  R+
Sbjct: 594  QFDILYHDDFNKHMVQPDTYKQQHPFHAIVLAKTQDGLKNLFKLASDS-MVNHFYRVARV 652

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL--TFKKLFGDRLYV----- 184
              S L++   EGL++ +G + G +  A      + A+ +     + ++    LY      
Sbjct: 653  PRSVLEKY-REGLLVGSGCADGEVFTAMMQKGYETAKAKAKNYDYLEIQPKALYAPLLER 711

Query: 185  NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             L +           +V+LA   + P+VA+ +  F+++ED     +L+          + 
Sbjct: 712  ELVKDEEELEDIIKNMVKLAEELDKPIVASGDVHFMNKEDAIYRKILIHSQGGANPLNRL 771

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
            +          +       F     A +  V+   + + +     P+  +    +     
Sbjct: 772  KNLPDAHFRTTDEMLDEFAFLGPELAKKVVVDDPNKVAAMCDEITPVKDKLYTPKMPG-- 829

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
               E+++RN  +                  +  + RLD EL  +    FS  +LI    +
Sbjct: 830  --AEDDIRNLTMNKAHELYGDPL------PEIVQARLDKELKSVIGNGFSVIYLIAQKLV 881

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------- 399
              + K+   VG  RGS   S+ A    IT+++PL                          
Sbjct: 882  FKSNKDGYLVG-SRGSVGSSLVATMTGITEVNPLPPHYRCPECKYSEFFTKGEYGSGYDL 940

Query: 400  ----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                              + FE FL      +PD D++F  D +     Y +  +G   V
Sbjct: 941  PDKKCPKCQTQLVKDGQEIPFETFLGFKGNKVPDIDLNFSGDYQPVAHNYTKVLFGENNV 1000

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
             +  T G++  K A   V                            +A   D+       
Sbjct: 1001 FRAGTIGTVADKTAYGYV----------------------------KAYERDNELTLRSA 1032

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS---DLPVTQF 558
                   +  +++   G+ R    H AGI  V     +    P+             T F
Sbjct: 1033 E------VDRLAKGATGVKRTTGQHPAGILVVPDYMDIYDFTPIQYPADDVNAAWRTTHF 1086

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
            +   I    ++K D LG    T+++     + Q    ++   IP DD     L +    L
Sbjct: 1087 DFHSIHD-NILKLDCLGHDDPTMIR-----MLQDLSGIEPKTIPTDDPGVMALFSGTEIL 1140

Query: 619  GIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
            G+   Q++S      +       +  ++      +P     ++  +   +G +  +    
Sbjct: 1141 GVTEEQIQSKTGTLGIPEFGTRFVRGMLEET---KPKTFAELLKISGLSHGTDVWLGNAE 1197

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
             +      T   +I     + +  +  G     A  +   + K      +     +    
Sbjct: 1198 ELIQNKTVTMPEVIGCRDDIMMDLIHMGVESDLAFKIMEHVRKGRGIPDE-----WQEEM 1252

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
             K  + +       ++      Y F K+HAAAY +++ + A+ K +YP+ + +A  ++  
Sbjct: 1253 HKANVPEWYIGACLKI-----KYMFPKAHAAAYVLMALRIAYFKVYYPLIYYSAYFSVRA 1307

Query: 797  DNVEKIKK---------------------------------FCQDARQFNIQIMPPSVNT 823
            D+ + +                                      +  +   +     +  
Sbjct: 1308 DDFDLVAMANGKESVKARMKEINEKGNDVSAKEKNLLTVLELANEMLERGFEFKMVDIKR 1367

Query: 824  PCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                D+ +  N +    +AI G+G   A+ I+ A  ++ F S +D   R
Sbjct: 1368 SDASDWLIEGNTLLAPFSAIPGLGLNVAKQIVAAREEREFISKQDLKER 1416



 Score = 94.5 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 40/90 (44%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S+++   S+++ + + A   Q AIAITD + L +  E        G++ + 
Sbjct: 342 VELHLHSNMSMMDATNSISDFVAQAAKWGQKAIAITDHSTLQAFPEAHSAGQKNGVKILY 401

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 402 GVEANVVEDSQPIAYNEAHEELKHATYVVF 431


>gi|309389228|gb|ADO77108.1| DNA polymerase III catalytic subunit, PolC type [Halanaerobium
            praevalens DSM 2228]
          Length = 1404

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 159/915 (17%), Positives = 308/915 (33%), Gaps = 200/915 (21%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                 V+L    +G + L +L+S  +L +   +  RI  S L +   EGLI+ +   +G 
Sbjct: 579  RPFHAVILAENKKGLKNLYQLISISHL-NNFYKKPRILKSVLLQ-HREGLIIGSACEAGQ 636

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-------------RYRESQVV 201
            I +AF  N  +   K++           Y+ LQ                   +    ++ 
Sbjct: 637  IYKAFVNNKPRSEIKKIAKLYD------YLELQPLGNNQFLIPAKVNSKDDLKEINKKIY 690

Query: 202  QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            +L    + P+VAT ++ FL  +D    ++   +      +  D+ +    +   N     
Sbjct: 691  KLGQELDKPVVATTDAHFLDPKDSIFREI---LQTGQGFNDADQ-QPPIYYRTTNEMLSE 746

Query: 262  SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEV 321
              +     A E  ++   + +  ++   PI       E +      E E+R  +      
Sbjct: 747  FAYFGKKIAKEIVIDNPNQIADRIEKIKPIPDGLFTPEIEG----AEAEIREMSYNRAHK 802

Query: 322  RLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSG 381
               +         Q    RL+ EL+ I    F+  +LI    ++ + ++   VG  RGS 
Sbjct: 803  FYGE------KLPQLVIDRLEKELSSIIENGFAVIYLIAHKLVKKSLEDGYLVG-SRGSV 855

Query: 382  AGSVTAYALTITDIDPLR-----------------------------------------F 400
              S  A    IT+++PL                                          F
Sbjct: 856  GSSFVATMTEITEVNPLPPHYRCPKCSKHEFITDGSIGTGVDLPDKKCPDCGTEYIKDGF 915

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE F+      +PD D++F  + + ++ +Y +  +G + V +  T  ++  + A   
Sbjct: 916  DIPFEVFMGFKGDKVPDIDLNFSGEYQGKIHKYTEEFFGRDYVYKAGTISTIADRTAFGF 975

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            V               K   ++    V    I                     +     G
Sbjct: 976  V---------------KNYLDEKGMDVKRAEIDR-------------------LVAGCTG 1001

Query: 521  LYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLG 575
            + R    H  G++I      +    P+         D+  T F+   I    ++K D LG
Sbjct: 1002 VRRTTGQHPGGLMIVPKSNSIFDFSPIQHPANDQDTDIRTTHFDYHSI-SGRILKLDLLG 1060

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIF 621
                T L+     L Q    ++   IP DD +T  + ++                TLGI 
Sbjct: 1061 HDDPTSLR-----LLQDMTGIEPKDIPLDDPDTMSIFSSTDILEVEADLLGTDIGTLGIP 1115

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            +  +S ++Q L   +P    +++ +  L                N +  I +    +  +
Sbjct: 1116 EFGTSFVQQMLRDTRPTTFAELVRISGLSHG-------TDVWINNAQSLIRNGKAELAEV 1168

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            +     ++ Y  Q         G   S+A  +   + K      ++++            
Sbjct: 1169 ISVRDDIMNYLLQ--------KGVEPSQAFWIMEHVRKGKGLTAEEEEAMR--------- 1211

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE- 800
             +    N +    K   Y F K+HAAAY  ++Y+ A+ K HYP  F  A  +++  + + 
Sbjct: 1212 -ENQVPNWYIDSCKKIKYMFPKAHAAAYVTMAYRIAYFKVHYPAAFYTAYFSIKAGDFDA 1270

Query: 801  --------------------------------KIKKFCQDARQFNIQIMPPSVNTPCVDF 828
                                             + +   +A    I+ MP  +     + 
Sbjct: 1271 QLACNGRQVVIDKIEELEALGNDMTAKESGTLTVLRIVLEAMMRGIEFMPVDIYESAANH 1330

Query: 829  KV--GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
             +   +N++   L +++G+G + A  ++       F S+E+  +R     L   V+E L 
Sbjct: 1331 FIKKEENKLLAPLISLQGLGGSAAESVVVERQKSDFTSIEELSNRTS---LTSTVIEILR 1387

Query: 887  FAGALDCFGYSRMQL 901
              G+L      R QL
Sbjct: 1388 EHGSLAGM-PERNQL 1401



 Score = 91.0 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++  L++ +++ +       A+AITD   + +  +        G++ I 
Sbjct: 306 VELHLHTQMSAMDSVLNVKDVVKRAGDWGHKALAITDHGVVQAFPDAYAAGEKHGVKIIY 365

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G +  +       + N           IV 
Sbjct: 366 GVEAYLVDDGEPIIHNPYSASLAETEFIVF 395


>gi|218133709|ref|ZP_03462513.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC
            43243]
 gi|217991084|gb|EEC57090.1| hypothetical protein BACPEC_01578 [Bacteroides pectinophilus ATCC
            43243]
          Length = 1403

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 162/957 (16%), Positives = 298/957 (31%), Gaps = 198/957 (20%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            L +D  +     +           I+LL S+ +G   L  L+S  ++        RI  S
Sbjct: 541  LTLDQLNEAGTPDVDAIRKMPTYHIILLASSEQGRINLYRLISASHIT-YFANRPRIPKS 599

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY-- 192
             L     +G+I+ +   +G + +A    + +    R++ F        Y+ +Q       
Sbjct: 600  LLARY-RDGIIVGSACEAGDLFQAVLNGAPEEEIARIVNFYD------YLEVQPIGNNRF 652

Query: 193  ----------DRY----RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
                      D         +++ L      P+VAT +  F++ ED E +  ++      
Sbjct: 653  MIDSDSCWVKDEQDLIDLNRKIIHLGEVFNKPVVATGDVHFMNPED-EVYRRIVMTQKG- 710

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                 D  R  P +       +      D  +A E  V    R   + +   P+ P    
Sbjct: 711  ---FDDADRQAPLYLRTTEEMLAEFEYLDADKAYEIVVTNTDRIMKMCEKIEPVRPDKRP 767

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
               ++  +     LR+                         +RL+ EL  I    +S  +
Sbjct: 768  PVIENSDQT----LRDICYNRAHEMYGP------TLPTVVEERLERELKSIISNGYSVMY 817

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            +I    +  +  +   VG  RGS   S  A    IT+++PL                   
Sbjct: 818  IIAQKLVWKSNDDGYLVG-SRGSVGSSFAATMAGITEVNPLSPHYLCPNCYYVDFDSEDV 876

Query: 400  ---------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                                       F + FE FL       PD D++F  + + +   
Sbjct: 877  RKFSGAAGCDMPDKICPVCGKKLRKEGFDIPFETFLGFKGNKEPDIDLNFSNEYQSKAHA 936

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            Y +  +G  +  +  T G++  K A           Y  V    +       H V+ +  
Sbjct: 937  YTEVIFGKGQTFKAGTIGTVAEKTA-----------YGYVKGYFEKQSEKLGHNVTKRNC 985

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVR 550
                              +  ++     + R    H  GIV       +    P+     
Sbjct: 986  E-----------------IERLAAGCVDIRRTTGQHPGGIVVLPIGEEIHTFTPIQHPAN 1028

Query: 551  ---SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
               S +  T F+   I+       + L L  L  L  ++  + Q    +D + IP D  E
Sbjct: 1029 KMDSGITTTHFDYHSIDH------NLLKLDILGHLDPTMIRMLQDLTGLDPTEIPLDSPE 1082

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
               L      LGI      G +    G+     +  + ++   +P    ++V      +G
Sbjct: 1083 VMSLFKDTSALGITPDMIGGTKLGALGIPEFGTDFAMQMLIDAKPQHFSDLVRIAGLAHG 1142

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             +  +     +    K T    I     +    +  G     +  +  ++ K    + + 
Sbjct: 1143 TDVWLGNAQTLIAEGKATISTAICTRDDIMTYLISMGLDKELSFTIMESVRKGKGLKDE- 1201

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
                ++    + G+      +  ++      Y F K+HAAAY +++++ A+ K  YP+ +
Sbjct: 1202 ----WLPIMKEAGVPDWYIWSCKKI-----KYMFPKAHAAAYVMMAWRVAYCKVFYPLAY 1252

Query: 788  LAASMTLEMDNV-----------------------------------EKIKKFCQDARQF 812
              A  ++  D                                         +  Q+    
Sbjct: 1253 YCAFFSIRADAFSYNLMCMGRDKLEYYIKDYKERHNAKTLSPTEEATYADMRIVQEFYAR 1312

Query: 813  NIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              + MP  +       F+V D +I  SL AI G+G   A  I  A+ D  F S EDF +R
Sbjct: 1313 GFEFMPIDIFRAKARSFQVIDGKIMPSLKAIDGLGEVAAESIEIAARDGAFLSKEDFKTR 1372

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
                K+    +  L      D FG      L SL +                 ++F 
Sbjct: 1373 A---KVGDSAVSLL------DSFGI-----LGSLPD-------------TNQLSLFD 1402



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 11/97 (11%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE-FSQ------KACA 64
           V L  H+  S ++G     +++ +  +  Q AIAITD   + +  + F         A  
Sbjct: 277 VELHCHTKMSDMDGVSYAKDLIKQALSWGQKAIAITDHGTVQAFTDAFHVVRDLEGAAKK 336

Query: 65  AG----IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
            G     + I G +  +       +            
Sbjct: 337 KGEDFDFKIIYGVEGYLVDDTKKPVIRSKNQSLDEKY 373


>gi|254828680|ref|ZP_05233367.1| polC [Listeria monocytogenes FSL N3-165]
 gi|254829923|ref|ZP_05234578.1| DNA polymerase III PolC [Listeria monocytogenes 10403S]
 gi|254898515|ref|ZP_05258439.1| DNA polymerase III PolC [Listeria monocytogenes J0161]
 gi|254911994|ref|ZP_05262006.1| DNA polymerase III [Listeria monocytogenes J2818]
 gi|254936321|ref|ZP_05268018.1| polC [Listeria monocytogenes F6900]
 gi|255026351|ref|ZP_05298337.1| DNA polymerase III PolC [Listeria monocytogenes FSL J2-003]
 gi|284801705|ref|YP_003413570.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578]
 gi|284994847|ref|YP_003416615.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923]
 gi|258601084|gb|EEW14409.1| polC [Listeria monocytogenes FSL N3-165]
 gi|258608911|gb|EEW21519.1| polC [Listeria monocytogenes F6900]
 gi|284057267|gb|ADB68208.1| DNA polymerase III PolC [Listeria monocytogenes 08-5578]
 gi|284060314|gb|ADB71253.1| DNA polymerase III PolC [Listeria monocytogenes 08-5923]
 gi|293589958|gb|EFF98292.1| DNA polymerase III [Listeria monocytogenes J2818]
          Length = 1444

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 154/918 (16%), Positives = 286/918 (31%), Gaps = 177/918 (19%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            +D     N  M               +   TA G + L +L++   + +   +  RI  S
Sbjct: 597  IDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYFYRVPRIPRS 655

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NLQ 187
             L+++  EGLI+ T  S G +  A      Q AEK    +   ++    +Y       L 
Sbjct: 656  QLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIERELV 714

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R           +V++      P+VAT N  +      + +  ++  +            
Sbjct: 715  RDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP-VDKIYRKILIHSQGGANPLNRAEL 773

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                    +       F    +A E  V  A      ++   PI       + D      
Sbjct: 774  PDVHFRTTDEMLKEFAFLGEEKAKEIVVTNANLVVDWMENLKPIKDELYTPKIDG----A 829

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+E+RN + A       +         +    RL+ EL  I    F+  +LI    ++ +
Sbjct: 830  EDEVRNMSYAMAHQLYGE------KLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKS 883

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
              +   VG  RGS   S  A    IT+++PL                             
Sbjct: 884  LVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDGSVGSGFDLPDK 942

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  D +     Y +  +G + V + 
Sbjct: 943  DCPHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFRA 1002

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V R  +   +   R  +                             
Sbjct: 1003 GTIGTVAEKTAFGYV-RNYERDMNMTIRGAE----------------------------- 1032

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVR---SDLPVTQFNMK 561
                +  +     G+ R    H  GI+       +    P+        S+   T F+  
Sbjct: 1033 ----IDRLVAGCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATDSEWKTTHFDFH 1088

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY-----------H 610
             I    ++K D LG    T ++   D          +     D  + +            
Sbjct: 1089 SIHD-NVLKLDILGHDDPTAIRMLQDLSG--IDPKTIPTDDPDVMKLFGSTESLGVKPAD 1145

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            + +  GTLGI +  +  +RQ LE  +P    +++ +  L                N +E 
Sbjct: 1146 IDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG-------TDVWLGNAEEL 1198

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            I +    +  ++     ++++         +  G   S A  +  ++ K      + ++ 
Sbjct: 1199 IKNKTCELPDVIGCRDDIMVFL--------IYQGLESSLAFKIMESVRKGKGLTDEMEEA 1250

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
               +               +    K   Y F K+HAAAY +++ + A+ K HYP+ F A 
Sbjct: 1251 MMANK----------VPLWYIESCKKIKYMFPKAHAAAYVLMAVRIAYFKVHYPLYFYAT 1300

Query: 791  SMTLEMDNVEKIKK---------------------------------FCQDARQFNIQIM 817
              T+  D+ +                                        +         
Sbjct: 1301 YFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHFQ 1360

Query: 818  PPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
               +     D F +  + +     AI  +GT  A+ I+ A  +  F S ED   R    K
Sbjct: 1361 KVDLYKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQR---GK 1417

Query: 877  LNRRVLESLVFAGALDCF 894
            +++ +++ +   G L+  
Sbjct: 1418 VSKTIIQYMDDQGCLEGL 1435



 Score = 82.1 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 342 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 401

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G + ++         N          
Sbjct: 402 GIEANLIDDGVPIAYNDQHIALEDAT 427


>gi|224499902|ref|ZP_03668251.1| DNA polymerase III PolC [Listeria monocytogenes Finland 1988]
          Length = 1444

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 154/918 (16%), Positives = 286/918 (31%), Gaps = 177/918 (19%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            +D     N  M               +   TA G + L +L++   + +   +  RI  S
Sbjct: 597  IDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYFYRVPRIPRS 655

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NLQ 187
             L+++  EGLI+ T  S G +  A      Q AEK    +   ++    +Y       L 
Sbjct: 656  QLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIERELV 714

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R           +V++      P+VAT N  +      + +  ++  +            
Sbjct: 715  RDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP-VDKIYRKILIHSQGGANPLNRAEL 773

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                    +       F    +A E  V  A      ++   PI       + D      
Sbjct: 774  PDVHFRTTDEMLKEFAFLGEEKAKEIVVTNANLVVDWMENLKPIKDELYTPKIDG----A 829

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+E+RN + A       +         +    RL+ EL  I    F+  +LI    ++ +
Sbjct: 830  EDEVRNMSYAMAHQLYGE------KLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKS 883

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
              +   VG  RGS   S  A    IT+++PL                             
Sbjct: 884  LVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDGSVGSGFDLPDK 942

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  D +     Y +  +G + V + 
Sbjct: 943  DCTHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFRA 1002

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V R  +   +   R  +                             
Sbjct: 1003 GTIGTVAEKTAFGYV-RNYERDMNMTIRGAE----------------------------- 1032

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVR---SDLPVTQFNMK 561
                +  +     G+ R    H  GI+       +    P+        S+   T F+  
Sbjct: 1033 ----IDRLVAGCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATDSEWKTTHFDFH 1088

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY-----------H 610
             I    ++K D LG    T ++   D          +     D  + +            
Sbjct: 1089 SIHD-NVLKLDILGHDDPTAIRMLQDLSG--IDPKTIPTDDPDVMKLFGSTESLGVKPAD 1145

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            + +  GTLGI +  +  +RQ LE  +P    +++ +  L                N +E 
Sbjct: 1146 IDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG-------TDVWLGNAEEL 1198

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            I +    +  ++     ++++         +  G   S A  +  ++ K      + ++ 
Sbjct: 1199 IKNKTCELPDVIGCRDDIMVFL--------IYQGLESSLAFKIMESVRKGKGLTDEMEEA 1250

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
               +               +    K   Y F K+HAAAY +++ + A+ K HYP+ F A 
Sbjct: 1251 MMANK----------VPLWYIESCKKIKYMFPKAHAAAYVLMAVRIAYFKVHYPLYFYAT 1300

Query: 791  SMTLEMDNVEKIKK---------------------------------FCQDARQFNIQIM 817
              T+  D+ +                                        +         
Sbjct: 1301 YFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHFQ 1360

Query: 818  PPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
               +     D F +  + +     AI  +GT  A+ I+ A  +  F S ED   R    K
Sbjct: 1361 KVDLYKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQR---GK 1417

Query: 877  LNRRVLESLVFAGALDCF 894
            +++ +++ +   G L+  
Sbjct: 1418 VSKTIIQYMDDQGCLEGL 1435



 Score = 82.1 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 342 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 401

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G + ++         N          
Sbjct: 402 GIEANLIDDGVPIAYNDQHIALEDAT 427


>gi|257439598|ref|ZP_05615353.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
            A2-165]
 gi|257197965|gb|EEU96249.1| DNA polymerase III, alpha subunit [Faecalibacterium prausnitzii
            A2-165]
          Length = 1417

 Score =  208 bits (529), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 155/921 (16%), Positives = 295/921 (32%), Gaps = 176/921 (19%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++      N  +    +        +++LV    G + L ++VS  + ++   +  R+  
Sbjct: 564  EVTTVEGINTGLGGNREVLKKKYFHLIILVKNQMGLKNLYKIVSEAH-VNYFFKKPRVPR 622

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
            S L +   +GLI+ +   +G + RA     S    K++ ++  +      + +Q     +
Sbjct: 623  SLLNKY-RDGLILTSACEAGELYRAVVEGRSYEELKKIASYYDV------LEIQPLGNNE 675

Query: 194  --------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA--HS 237
                          +     +++L      P++AT +  F   ED     VL A      
Sbjct: 676  YMVRDGKVESEEVIKDFNRTIIRLGEDLHKPVIATGDVHFTEPEDAIYRTVLQAGNGFKD 735

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
                     R T D   +              A E  V   R+ +  +  +   +PR   
Sbjct: 736  ADTQPPLFYRTTEDMLKQFSYLPKEK------AYEIVVTNPRKIAATIDNNVRAIPRGTY 789

Query: 298  KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
                   +  E +LR+      +              +    RL  EL+ I    ++  +
Sbjct: 790  P---PSIEGAEQQLRDATWEHAKRDYGDPL------PKIVEDRLKKELDSICGHGYAVLY 840

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            +I    + ++      VG  RGS   S  A+   I++++ L                   
Sbjct: 841  VIAVKLVAYSNAGGYQVG-SRGSVGSSAVAHFSGISEVNSLPPHYRCPKCKYSEFITDGS 899

Query: 400  -----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQN 436
                                     + FE FL       PD D++F  + +  V RY + 
Sbjct: 900  VDDGFDLPDKDCPHCGTRMLVDGHDIPFETFLGFYGDKEPDIDLNFSGEYQSNVHRYTEE 959

Query: 437  KYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDS 496
             +G   V +  T   +Q K A   V + L+                    V+    A+++
Sbjct: 960  LFGKANVFKAGTVSGIQDKTAYGYVKKYLEA---------------RGKTVNH---AEEN 1001

Query: 497  RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS--- 551
            R                 +    G+ R    H  G+V+      +    P+         
Sbjct: 1002 RL----------------TLGCTGVKRTTGQHPGGMVVVPDTYEIYDFCPIQHPADDVAG 1045

Query: 552  DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHL 611
             L  T F  K++    L+K D LG    T  +       +    + +  IP +D   Y L
Sbjct: 1046 GLLTTHFEFKYLHDT-LLKLDELGHDMPTFYKYF-----EEYTGIPVDSIPMNDPRVYSL 1099

Query: 612  LTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
            LT+   LG+   Q++S      +  M  + +  +   +   RP     ++  +   +G +
Sbjct: 1100 LTSPEELGVTPEQIDSQTGTFGIPEMGTNFVRGM---LVEARPRNFSELIQISGLSHGTD 1156

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
                    +      T   +I     + +  L  G     A  +  A+ K  K      K
Sbjct: 1157 VWTGNADELIRSGTCTIAEVIGCRDSIMLYLLRKGLEPKMAFDIMEAVRKG-KVAKGGFK 1215

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              +     ++ +      +  ++      Y F K+HA AY + + +  W K + P EF A
Sbjct: 1216 PGWEEAMREHEVPDWYIESCRKI-----KYMFPKAHAVAYLMSAIRLMWFKLYRPAEFYA 1270

Query: 790  ASMTLEMDNVEKIK----------------------------------KFCQDARQFNIQ 815
               T+  D+++                                     +   +       
Sbjct: 1271 VYFTVRGDDIDYEAAVGGAAVARAHMEAVKRRLKEEKNAKDEDVLVSLQLVNEMLSRGYA 1330

Query: 816  IMPPSVNTPC-VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVD 873
             +P  +       + V D ++     A+KGVG T A  +  A+ D   + S+E+      
Sbjct: 1331 FLPIELGKSRGNKYIVEDGKVRLPFCALKGVGGTAAASLERATIDGQEYISVEELQQ--- 1387

Query: 874  SKKLNRRVLESLVFAGALDCF 894
            +  +   VLESL  AG L   
Sbjct: 1388 ATGVTSAVLESLRSAGVLADL 1408



 Score = 67.1 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 5/93 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK---ACAA--G 66
           V L +H+  S ++       I+        PAIAITD        E          +   
Sbjct: 307 VELHLHTKLSSMDAFCDPGGIVKLAHRMGHPAIAITDHGVCQGYPEAMLATDEIHKSDPD 366

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
            + I GC+          +      P      +
Sbjct: 367 FKLIYGCEAYFVDDMVPCVYGVKDQPLDGEFCV 399


>gi|148543926|ref|YP_001271296.1| DNA polymerase III PolC [Lactobacillus reuteri DSM 20016]
 gi|184153322|ref|YP_001841663.1| DNA polymerase III PolC [Lactobacillus reuteri JCM 1112]
 gi|227364835|ref|ZP_03848882.1| DNA polymerase III PolC [Lactobacillus reuteri MM2-3]
 gi|325682539|ref|ZP_08162056.1| DNA polymerase III PolC [Lactobacillus reuteri MM4-1A]
 gi|166918295|sp|A5VJD5|DPO3_LACRD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|148530960|gb|ABQ82959.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
            reuteri DSM 20016]
 gi|183224666|dbj|BAG25183.1| DNA polymerase III alpha subunit [Lactobacillus reuteri JCM 1112]
 gi|227070098|gb|EEI08474.1| DNA polymerase III PolC [Lactobacillus reuteri MM2-3]
 gi|324978378|gb|EGC15328.1| DNA polymerase III PolC [Lactobacillus reuteri MM4-1A]
          Length = 1443

 Score =  208 bits (528), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 141/911 (15%), Positives = 285/911 (31%), Gaps = 172/911 (18%)

Query: 55   ALEFSQKACA-AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
              +F + A A   ++        +D  +   M             + +   T  G + L 
Sbjct: 582  LYKFLKDAEARYDVK-------YVDDLNKH-MEENNAYRHARPFHVTIFAQTQAGLKNLF 633

Query: 114  ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
            +LVS    ++   +  RI  + L +   EGL++ T  SSG +  A        A ++   
Sbjct: 634  KLVSLSN-VEYFYRVPRIPRTVLTKY-REGLLLGTACSSGEVFTAMMEKGYDQALEKARY 691

Query: 174  FKKLFGDRLYVNLQR----------HRGYD----RYRESQVVQLAYTHELPLVATNNSLF 219
            +        ++ +Q           H   D          +V+L    E  +VAT +  +
Sbjct: 692  YD-------FIEVQPKPNYAPLLEQHVIADEGHLEDILKNMVKLGDELEKTVVATGDVHY 744

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            L   D     +L+          +   R        +       F    +A E  VE + 
Sbjct: 745  LDPHDGIYRKILINSQGGANPLNRT-ERPEVHFRTTDEMLNEFAFLGEEKAHELVVENSN 803

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
            + +  +      +    +K      K  E E++++                    Q  + 
Sbjct: 804  KIAAEIDD---NIRPVKDKLYPPHMKGAEQEIQDRTWNTARKWYGDPL------PQLVQD 854

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            R++ ELN I +  FS ++LI    +  + K+   VG  RGS   SV A    IT+++PL 
Sbjct: 855  RIELELNSIVKNGFSVHYLIAQRLVAKSNKDGYLVG-SRGSVGSSVVATLSGITEVNPLP 913

Query: 400  -----------------------------------------FSLLFERFLNPDRMSMPDF 418
                                                       + F+ FL      +PD 
Sbjct: 914  PHYRCPNCQFTHFYTQGEYSSGFDLPDKKCPKCGTLMVKDGHDIPFQTFLGFKGNKVPDI 973

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  D +     Y++  +G + V +  T G++  K A   V                 
Sbjct: 974  DLNFSGDYQPIAHNYMKVLFGEKNVFRAGTIGTVADKTAYGYV----------------- 1016

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD-- 536
                            +  FR+A            +++   G+ R    H AGI+I    
Sbjct: 1017 ---------KAYERDTEKEFRKAEED--------RLAKGATGVKRTTGQHPAGIIIVPDD 1059

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
              +    P+      D     +     +   +   + L +  L     ++    Q    +
Sbjct: 1060 MDIYDFTPVQYPA--DDQTAAWETTHFDFHSIH-DNILKMDILGHDDPTMIRALQDLSGI 1116

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            D   IP DD     L ++   LG+   Q++S      L       +  +   +    P  
Sbjct: 1117 DPQSIPMDDPGVMALFSSPKVLGVTEEQIQSKTGTLGLPEFGTRFVRGM---LEDTHPKN 1173

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
               ++  +   +G    +     +      T   +I     +    +  G     +  + 
Sbjct: 1174 YSQLLQISGLSHGTGVWLDNAQELIKQGIATIANVIGCRDNIMTDLIHYGMDSEISFQIM 1233

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
              + K      +     +     +  + +    +  ++      Y F ++HAAAY +++ 
Sbjct: 1234 EHVRKGRGIPDE-----WQEKMHEANVPQWYMDSCLKI-----KYMFPRAHAAAYVLMAL 1283

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKK------------------------------ 804
            + A+ K ++P+ +  A  ++  D+ + +                                
Sbjct: 1284 RIAYFKVYFPLVYYCAFFSVRADDFDVVAMSHGKDAVKQRMKEINDKGNDASAKEKNLLT 1343

Query: 805  ---FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                  +  +   +     +      D+ +  + +     A+ G+G   A+ I+ A  ++
Sbjct: 1344 ILELANEMLERGFKFKMVDIEKSDASDWLIDGDSLIAPFRAVPGLGLNVAKQIVAAREER 1403

Query: 861  PFDSLEDFCSR 871
            PF S ED   R
Sbjct: 1404 PFLSKEDLAER 1414



 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++   S+  +  +      PAIA+TD  N+ +  E    A   GI+ + 
Sbjct: 340 VELHTHTTMSQMDATNSITELATRAHKWGHPAIAVTDHGNVQAFPEAFSVAQKTGIKMLY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       + N+          ++ 
Sbjct: 400 GMEANVVDDGIPLVYNENHEELAHQTYVIF 429


>gi|90961543|ref|YP_535459.1| DNA polymerase III PolC [Lactobacillus salivarius UCC118]
 gi|122449173|sp|Q1WUF9|DPO3_LACS1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|90820737|gb|ABD99376.1| DNA polymerase III alpha subunit [Lactobacillus salivarius UCC118]
          Length = 1444

 Score =  208 bits (528), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 138/893 (15%), Positives = 285/893 (31%), Gaps = 165/893 (18%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            Q+      N  +              ++L  T EG + L +L S   ++    +  R+  
Sbjct: 593  QILYHDDFNKHVGENDAYKHEHPSHAIILAKTQEGLKNLFKLTSES-MVKYFYRVPRVPR 651

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
            S L++   EGLI+ +  + G +  A       +A+++   +        Y+ +Q    Y+
Sbjct: 652  SILEKY-REGLIVGSACADGEVFTAMMQKGYTIAKQKAEFYD-------YLEVQPKPLYE 703

Query: 194  --------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
                              + +V+LA+  + P+VAT +  F+++ED     +L+       
Sbjct: 704  PLLEQELVKDNDNLEEIITNMVKLAHELDKPIVATGDVHFMNKEDAIYRKILIHSQAGAN 763

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
               + +          +       F     A E  V    +    +    P+  +    +
Sbjct: 764  PLNRLKKLPDAHFRTTDEMLEEFSFLGEDIAKEIVVTNPNKLVDEISEITPVKDKLYTPK 823

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +      E ++ +  +                  +  ++RLD EL  +    FS  +LI
Sbjct: 824  MEG----AEQDIHDLTMNRAHAWYGD------TLPEIVQKRLDKELKSVIGNGFSVIYLI 873

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------- 399
                +  + K+   VG  RGS   S+ A    IT+++PL                     
Sbjct: 874  SQKLVYKSNKDGYLVG-SRGSVGSSLVATMTGITEVNPLPPHYRCPKCKWTHFYEKGEYG 932

Query: 400  ---------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
                                   + FE FL      +PD D++F  D +     Y +  +
Sbjct: 933  SGYDLPDKDCPNCGTELIKDGQDIPFETFLGFKGNKVPDIDLNFSGDYQPIAHNYTKVLF 992

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G   V +  T G++  K A   V +A +    Q  R  +                     
Sbjct: 993  GENNVYRAGTIGTVADKTAYGYV-KAYERDTEQNFRGAE--------------------- 1030

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRSDLPVT 556
                        +  +++   G+ R    H AGI  V     +    P+      D    
Sbjct: 1031 ------------IDRLAKGATGVKRTTGQHPAGILVVPDYMDIYDFTPIQYPA--DDLTA 1076

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             +     +   +   + L L  L     ++  + Q    +D   IP DD     L +   
Sbjct: 1077 AWRTTHFDFHSIH-DNILKLDILGHDDPTMIRMLQDLSGIDPKTIPTDDPGVMALFSGTD 1135

Query: 617  TLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
             LG+   +++SS     +       +  ++       P     ++  +   +G +  +  
Sbjct: 1136 ILGVTPEEIQSSTGTLGVPEFGTRFVRGMLEET---HPKTFAELLKISGLSHGTDVWLGN 1192

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
               +      T   +I     + +  +  G    +A  +   + K      +     + +
Sbjct: 1193 AEELIKNGTVTMPDVIGCRDDIMMDLIHMGVESDKAFKIMEHVRKGRGIPDE-----WQA 1247

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
                  + +       ++      Y F K+HAAAY +++ + A+ K +YP+ + AA  ++
Sbjct: 1248 DMRAADVPEWYIGACLKI-----KYMFPKAHAAAYVLMALRIAYFKVYYPLVYYAAYFSV 1302

Query: 795  EMDNVEKIKK---------------------------------FCQDARQFNIQIMPPSV 821
              D+ + +                                      +  +         +
Sbjct: 1303 RADDFDLVSMSRGKEAVKNAMELINSKGNEATTKEKNLLTVLEIANEMLERGFDFSMVDI 1362

Query: 822  NTP-CVDFKVGDNR--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            N     ++ + ++   +     AI G+G   A+ I+ A  ++ F S ED   R
Sbjct: 1363 NKSDAQNWTIQEDGRTLLAPFTAIPGLGLNVAKQIVAAREEQEFISKEDLSKR 1415



 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S+++   S+   + K A     AIAITD   L +  E         ++ + 
Sbjct: 340 VELHLHSNMSMMDATNSITEYVSKAAEWGHKAIAITDHGTLQAFPEAHAAGQKNNVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          ++ 
Sbjct: 400 GVEANIVDDGVPIAYNEQHKNLRDATYVIF 429


>gi|300214373|gb|ADJ78789.1| DNA polymerase III polC-type (PolIII) [Lactobacillus salivarius CECT
            5713]
          Length = 1444

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 138/893 (15%), Positives = 285/893 (31%), Gaps = 165/893 (18%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            Q+      N  +              ++L  T EG + L +L S   ++    +  R+  
Sbjct: 593  QILYHDDFNKHIGENDAYKHEHPSHAIILAKTQEGLKNLFKLTSES-MVKYFYRVPRVPR 651

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
            S L++   EGLI+ +  + G +  A       +A+++   +        Y+ +Q    Y+
Sbjct: 652  SILEKY-REGLIVGSACADGEVFTAMMQKGYTIAKQKAEFYD-------YLEVQPKPLYE 703

Query: 194  --------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
                              + +V+LA+  + P+VAT +  F+++ED     +L+       
Sbjct: 704  PLLEQELVKDNDNLEEIITNMVKLAHELDKPIVATGDVHFMNKEDAIYRKILIHSQAGAN 763

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
               + +          +       F     A E  V    +    +    P+  +    +
Sbjct: 764  PLNRLKKLPDVHFRTTDEMLEEFSFLGEDIAKEIVVTNPNKLVDEISEITPVKDKLYTPK 823

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +      E ++ +  +                  +  ++RLD EL  +    FS  +LI
Sbjct: 824  MEG----AEQDIHDLTMNRAHAWYGD------TLPEIVQKRLDKELKSVIGNGFSVIYLI 873

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------- 399
                +  + K+   VG  RGS   S+ A    IT+++PL                     
Sbjct: 874  SQKLVYKSNKDGYLVG-SRGSVGSSLVATMTGITEVNPLPPHYRCPKCKWTHFYEKGEYG 932

Query: 400  ---------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
                                   + FE FL      +PD D++F  D +     Y +  +
Sbjct: 933  SGYDLPDKDCPNCGTELIKDGQDIPFETFLGFKGNKVPDIDLNFSGDYQPIAHNYTKVLF 992

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G   V +  T G++  K A   V +A +    Q  R  +                     
Sbjct: 993  GENNVYRAGTIGTVADKTAYGYV-KAYERDTEQNFRGAE--------------------- 1030

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRSDLPVT 556
                        +  +++   G+ R    H AGI  V     +    P+      D    
Sbjct: 1031 ------------IDRLAKGATGVKRTTGQHPAGILVVPDYMDIYDFTPIQYPA--DDLTA 1076

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             +     +   +   + L L  L     ++  + Q    +D   IP DD     L +   
Sbjct: 1077 AWRTTHFDFHSIH-DNILKLDILGHDDPTMIRMLQDLSGIDPKTIPTDDPGVMALFSGTD 1135

Query: 617  TLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
             LG+   +++SS     +       +  ++       P     ++  +   +G +  +  
Sbjct: 1136 ILGVTPEEIQSSTGTLGVPEFGTRFVRGMLEET---HPKTFAELLKISGLSHGTDVWLGN 1192

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
               +      T   +I     + +  +  G    +A  +   + K      +     + +
Sbjct: 1193 AEELIKNGTVTMPDVIGCRDDIMMDLIHMGVESDKAFKIMEHVRKGRGIPDE-----WQA 1247

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
                  + +       ++      Y F K+HAAAY +++ + A+ K +YP+ + AA  ++
Sbjct: 1248 DMRAADVPEWYIGACLKI-----KYMFPKAHAAAYVLMALRIAYFKVYYPLVYYAAYFSV 1302

Query: 795  EMDNVEKIKK---------------------------------FCQDARQFNIQIMPPSV 821
              D+ + +                                      +  +         +
Sbjct: 1303 RADDFDLVSMSRGKEAVKNAMELINSKGNEATTKEKNLLTVLEIANEMLERGFDFSMVDI 1362

Query: 822  NTP-CVDFKVGDNR--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            N     ++ + ++   +     AI G+G   A+ I+ A  ++ F S ED   R
Sbjct: 1363 NKSDAQNWTIQEDGRTLLAPFTAIPGLGLNVAKQIVAAREEQEFISKEDLSKR 1415



 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S+++   S+   + K A     AIAITD   L +  E         ++ + 
Sbjct: 340 VELHLHSNMSMMDATNSITEYVSKAAEWGHKAIAITDHGTLQAFPEAHAAGQKNNVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          ++ 
Sbjct: 400 GVEANIVDDGVPIAYNEQHKNLRDATYVIF 429


>gi|16803360|ref|NP_464845.1| DNA polymerase III PolC [Listeria monocytogenes EGD-e]
 gi|21263551|sp|Q8Y7G1|DPO3_LISMO RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|16410736|emb|CAC99398.1| polC [Listeria monocytogenes EGD-e]
          Length = 1444

 Score =  207 bits (527), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 154/918 (16%), Positives = 285/918 (31%), Gaps = 177/918 (19%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            +D     N  M               +   TA G + L +L++   + +   +  RI  S
Sbjct: 597  IDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYFYRVPRIPRS 655

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NLQ 187
             L+++  EGLI+ T  S G +  A      Q AEK    +   ++    +Y       L 
Sbjct: 656  QLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIERELV 714

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R           +V++      P+VAT N  +      + +  ++  +            
Sbjct: 715  RDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP-VDKIYRKILIHSQGGANPLNRAEL 773

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                    +       F    +A E  V  A      ++   PI       + D      
Sbjct: 774  PDVHFRTTDEMLKEFAFLGEEKAKEIVVTNANLVVDWMENLKPIKDELYTPKIDG----A 829

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+E+RN + A       +         +    RL+ EL  I    F+  +LI    ++ +
Sbjct: 830  EDEVRNMSYAMAHQLYGE------KLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKS 883

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
              +   VG  RGS   S  A    IT+++PL                             
Sbjct: 884  LVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDGSVGSGFDLPDK 942

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  D +     Y +  +G + V + 
Sbjct: 943  DCPHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFRA 1002

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V R  +   +   R  +                             
Sbjct: 1003 GTIGTVAEKTAFGYV-RNYERDMNMTIRGAE----------------------------- 1032

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVR---SDLPVTQFNMK 561
                +  +     G+ R    H  GI+       +    P+        S+   T F+  
Sbjct: 1033 ----IDRLVAGCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATDSEWKTTHFDFH 1088

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY-----------H 610
             I    ++K D LG    T ++   D          +     D  + +            
Sbjct: 1089 SIHD-NVLKLDILGHDDPTAIRMLQDLSG--IDPKTIPTDDPDVMKLFGSTESLGVKPAD 1145

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            + +  GTLGI +  +  +RQ LE  +P    +++ +  L                N +E 
Sbjct: 1146 IDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG-------TDVWLGNAEEL 1198

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            I +    +  ++     ++++         +  G   S A  +  ++ K      + ++ 
Sbjct: 1199 IKNKTCELPDVIGCRDDIMVFL--------IYQGLESSLAFKIMESVRKGKGLTDEMEEA 1250

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
               +               +    K   Y F K+HAAAY +++ + A+ K HYP+ F A 
Sbjct: 1251 MMANK----------VPLWYIESCKKIKYMFPKAHAAAYVLMAVRIAYFKVHYPLYFYAT 1300

Query: 791  SMTLEMDNVEKIKK---------------------------------FCQDARQFNIQIM 817
              T+  D+ +                                        +         
Sbjct: 1301 YFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHFQ 1360

Query: 818  PPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
               +     D F +    +     AI  +GT  A+ I+ A  +  F S ED   R    K
Sbjct: 1361 KVDLYKSSADEFIIDGESLIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQR---GK 1417

Query: 877  LNRRVLESLVFAGALDCF 894
            +++ +++ +   G L+  
Sbjct: 1418 VSKTIIQYMDDQGCLEGL 1435



 Score = 82.1 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 342 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 401

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G + ++         N          
Sbjct: 402 GIEANLIDDGVPIAYNDQHIALEDAT 427


>gi|224501737|ref|ZP_03670044.1| DNA polymerase III PolC [Listeria monocytogenes FSL R2-561]
          Length = 1444

 Score =  207 bits (527), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 154/918 (16%), Positives = 285/918 (31%), Gaps = 177/918 (19%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            +D     N  M               +   TA G + L +L++   + +   +  RI  S
Sbjct: 597  IDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYFYRVPRIPRS 655

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NLQ 187
             L+++  EGLI+ T  S G +  A      Q AEK    +   ++    +Y       L 
Sbjct: 656  QLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIERELV 714

Query: 188  RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
            R           +V++      P+VAT N  +      + +  ++  +            
Sbjct: 715  RDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP-VDKIYRKILIHSQGGANPLNRAEL 773

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                    +       F    +A E  V  A      ++   PI       + D      
Sbjct: 774  PDVHFRTTDEMLKEFAFLGEEKAKEIVVTNANLVVDWMENLKPIKDELYTPKIDG----A 829

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            E+E+RN + A       +         +    RL+ EL  I    F+  +LI    ++ +
Sbjct: 830  EDEVRNMSYAMAHQLYGE------KLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKS 883

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
              +   VG  RGS   S  A    IT+++PL                             
Sbjct: 884  LVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDGSVGSGFDLPDK 942

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  D +     Y +  +G + V + 
Sbjct: 943  DCPHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFRA 1002

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V R  +   +   R  +                             
Sbjct: 1003 GTIGTVAEKTAFGYV-RNYERDMNMTIRGAE----------------------------- 1032

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVR---SDLPVTQFNMK 561
                +  +     G+ R    H  GI+       +    P+        S+   T F+  
Sbjct: 1033 ----IDRLVAGCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATDSEWKTTHFDFH 1088

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY-----------H 610
             I    ++K D LG    T ++   D          +     D  + +            
Sbjct: 1089 SIHD-NVLKLDILGHDDPTAIRMLQDLSG--IDPKTIPTDDPDVMKLFGSTESLGVKPAD 1145

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            + +  GTLGI +  +  +RQ LE  +P    +++ +  L                N +E 
Sbjct: 1146 IDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG-------TDVWLGNAEEL 1198

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
            I +    +  ++     ++++         +  G   S A  +  ++ K      + ++ 
Sbjct: 1199 IKNKTCELPDVIGCRDDIMVFL--------IYQGLESSLAFKIMESVRKGKGLTDEMEEA 1250

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
               +               +    K   Y F K+HAAAY +++ + A+ K HYP+ F A 
Sbjct: 1251 MMANK----------VPLWYIESCKKIKYMFPKAHAAAYVLMAVRIAYFKVHYPLYFYAT 1300

Query: 791  SMTLEMDNVEKIKK---------------------------------FCQDARQFNIQIM 817
              T+  D+ +                                        +         
Sbjct: 1301 YFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHFQ 1360

Query: 818  PPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
               +     D F +    +     AI  +GT  A+ I+ A  +  F S ED   R    K
Sbjct: 1361 KVDLYKSSADEFIIDGESLIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQR---GK 1417

Query: 877  LNRRVLESLVFAGALDCF 894
            +++ +++ +   G L+  
Sbjct: 1418 VSKTIIQYMDDQGCLEGL 1435



 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 342 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 401

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G + ++         N          
Sbjct: 402 GIEANLIDDGVPIAYNDQHIALEDAT 427


>gi|315302974|ref|ZP_07873694.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            ivanovii FSL F6-596]
 gi|313628654|gb|EFR97067.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            ivanovii FSL F6-596]
          Length = 1452

 Score =  207 bits (526), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 151/919 (16%), Positives = 284/919 (30%), Gaps = 177/919 (19%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +D     N  M               +   TA G + L +L++   + +   +  RI  
Sbjct: 604  DIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYFYRVPRIPR 662

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NL 186
            S L+++  EGLI+ T  S G +  A        AEK    +   ++    +Y       L
Sbjct: 663  SQLKKL-REGLIIGTACSQGELFEAMMQKGMLAAEKVAEFYDFIEIQPKPVYAPLIEREL 721

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R           +V++      P+VAT N  +      + +  ++  +           
Sbjct: 722  VRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP-VDKIYRKILIHSQGGANPLNRAE 780

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                     +       F    +A E  V  +      ++   PI       + D     
Sbjct: 781  LPDVHFRSTDEMLKEFAFLGEEKAKEVVVTNSNLVVDWMEELKPIKDELYTPKIDG---- 836

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+E+RN +         +         +    RL+ EL  I    F+  +LI    ++ 
Sbjct: 837  AEDEVRNMSYNMAHQLYGE------KLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKK 890

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            +  +   VG  RGS   S  A    IT+++PL                            
Sbjct: 891  SLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCQDSEFFDDGSIGSGFDLPD 949

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL      +PD D++F  D +     Y +  +G + V +
Sbjct: 950  KDCPHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFR 1009

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V R  +   +   R  +                            
Sbjct: 1010 AGTIGTVAEKTAFGYV-RNYERDMNMTIRGAE---------------------------- 1040

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVR---SDLPVTQFNM 560
                 +  +     G+ R    H  GI+       +    P+        S+   T F+ 
Sbjct: 1041 -----IDRLVAGCTGVKRTTGQHPGGIIVIPNYMDVYDFTPVQFPADATDSEWKTTHFDF 1095

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY----------- 609
              I    ++K D LG    T ++   D          +     D  + +           
Sbjct: 1096 HSIHD-NVLKLDILGHDDPTAIRMLQDLSG--IDPKTIPTDDPDVMKLFGSTESLGVKPA 1152

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             + +  GTLGI +  +  +RQ LE  +P    +++ +  L                N +E
Sbjct: 1153 DIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG-------TDVWLGNAEE 1205

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I +    +  ++     ++++         +  G   S A  +  ++ K      +   
Sbjct: 1206 LIKNKTCELPDVIGCRDDIMVFL--------IYQGLESSLAFKIMESVRKGKGLTEE--- 1254

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
                     N +      +  ++      Y F K+HAAAY +++ + A+ K HYP+ F A
Sbjct: 1255 --MEEAMMANNVPLWYIESCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHYPLYFYA 1307

Query: 790  ASMTLEMDNVEKIKK---------------------------------FCQDARQFNIQI 816
               T+  D+ +                                        +        
Sbjct: 1308 TYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHF 1367

Query: 817  MPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +     D F +  + +     AI  +GT  A+ I+ A  +  F S ED   R    
Sbjct: 1368 QKVDLYKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQR---G 1424

Query: 876  KLNRRVLESLVFAGALDCF 894
            K+++ +++ +   G L+  
Sbjct: 1425 KVSKTIIQYMDDQGCLEGL 1443



 Score = 81.8 bits (200), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 350 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 409

Query: 72  GCQLDIDMQD 81
           G + ++    
Sbjct: 410 GIEANLIDDG 419


>gi|257125285|ref|YP_003163399.1| DNA polymerase III subunit alpha [Leptotrichia buccalis C-1013-b]
 gi|257049224|gb|ACV38408.1| DNA polymerase III, alpha subunit [Leptotrichia buccalis C-1013-b]
          Length = 1459

 Score =  207 bits (526), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 163/950 (17%), Positives = 320/950 (33%), Gaps = 177/950 (18%)

Query: 57   EFSQKACAAGI-QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            +F     + GI + I   +++ D+Q N++ +    T         +LV    G + L EL
Sbjct: 582  KFLNMILSKGILKLI---EINTDLQPNIQNSETLNTM--------ILVKNQAGLRDLYEL 630

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS----GPIDRAFFFNSS-QVAEKR 170
            VSR ++   GK+  RI  S L  +    LI  +  +S    G +   +   +     E++
Sbjct: 631  VSRSHIEFFGKRRPRIPKSLLNSMRENLLIASSASASERNRGELVNLYLRGTEKDDIEEK 690

Query: 171  LLTFKKLFGDRLYVNLQ-----------RHRGYD-----RYRESQVVQLAYTHELPLVAT 214
               +        Y+ +            R +  +     R       +L       +VAT
Sbjct: 691  AKFYD-------YIEIHPTANYTDRVEKRSKEIENYDIIREMNKYFYELGKKLNKIVVAT 743

Query: 215  NNSLFLSEEDYEAHDVLM--AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE 272
             ++ +L E +    +VL+  +         +                   +  +     E
Sbjct: 744  GDTHYLEEREVINRNVLLLGSGTMWKTEVAEGVKEYEFFDRKLYFKTTEEMLEEFKYLGE 803

Query: 273  NT-VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
             T  E+    +  +      +            +  E+E+R    + L+    +      
Sbjct: 804  ETAQEVVVENTHRISDMIEQVRPIPTGFYPPKIEGAEDEVRKMTYSKLKELYGENID--- 860

Query: 332  YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
                D ++R++ ELN I +  F+  +LI    +  +      VG  RGS   S+ AY + 
Sbjct: 861  ---PDLKERVEKELNSIIQNGFAVLYLIAQKLVHKSVDAGYLVG-SRGSVGSSIVAYLMG 916

Query: 392  ITDID--------------------------PLRFSL-------------LFERFLNPDR 412
            IT+++                          P +                 FE F+  + 
Sbjct: 917  ITEVNGLYPHYRCPKCKHTEFMNEEGSGVDYPDKNCPECGTKYIKDGHAIPFEVFMGFNG 976

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
              +PD D++F  + + E+ +Y +  +G + V +  T  +L  K A   V + L+      
Sbjct: 977  DKVPDIDLNFSGEYQGEIHKYTEELFGSDNVFRAGTISTLAEKNAFGYVKKYLEEVEG-- 1034

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
                                      +           ++ I++  EG  +    H  G+
Sbjct: 1035 ----------------------TPEIK------ERKAEVMRIAKGCEGARKTTGQHPGGM 1066

Query: 533  VIGDRP--LSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            ++  +   +    P+ R           T F+   +++  L+K D LG    T L+    
Sbjct: 1067 IVVPKDKSIYDFCPIQRPANDMKATSKTTHFDYHVMDE-QLVKLDILGHDDPTTLR---- 1121

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIA 645
             + Q    VD+  IP DD E   L +    LG+   ++ S      +       ++ +  
Sbjct: 1122 -ILQDLTGVDIYTIPLDDKEVMSLFSGTEALGVTPDEIGSPTGTSGIPEFGTSFVKQM-- 1178

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
             +   RP     +V  +   +G +  ++           T   II     +    +  G 
Sbjct: 1179 -LVDTRPKTFAELVRISGLSHGTDVWLNNAQDYVRSGIATLSQIITVRDDIMNKLIDDGL 1237

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
              S A  +   + K    +  ++   F     ++G+ +    +  ++      Y F K H
Sbjct: 1238 DKSLAFSIMEFVRKGQPTKNPEKWREFSKTMKEHGVEQWYIDSCEKI-----KYMFPKGH 1292

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC------------------- 806
            A AY +++ + A+ K HYP+EF  A +  ++ + +    F                    
Sbjct: 1293 AVAYVMMAVRIAYFKVHYPIEFYTAFLNRKVGDFKMTTMFRPVEDLKQAKMELDRKGTLN 1352

Query: 807  -------------QDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARH 852
                          +     I++    +       F + D +I   L A+ G+G   A +
Sbjct: 1353 VKEKQELFLYEILIEMHYRKIELEQIDIYKSEAKLFTIQDGKIRMPLIAMDGLGEAVAEN 1412

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            I+       F S+ED   R    KLN+ ++E +   G L     +  Q L
Sbjct: 1413 IVSERKV-DFLSIEDLVKRT---KLNKTIVELMKEYGCLKDLSATNQQTL 1458



 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 1/90 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L  H++ S + G +S+ +   +        IA+TD   + S     ++A     + I 
Sbjct: 340 IELHAHTNMSEMSGVMSIKDYAKRAKEFGHSGIAVTDYGVVHSFPFAFKEA-NEDFKVIF 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G +  +   +   +TN           +V 
Sbjct: 399 GMEAYVVDDEQDLITNPKDKMIEDEIYVVF 428


>gi|160940984|ref|ZP_02088323.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC BAA-613]
 gi|158436074|gb|EDP13841.1| hypothetical protein CLOBOL_05878 [Clostridium bolteae ATCC BAA-613]
          Length = 1565

 Score =  207 bits (526), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 149/903 (16%), Positives = 279/903 (30%), Gaps = 175/903 (19%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            D++  + L   +           +++L     G   +  LVS  +L +   +  RI  S 
Sbjct: 711  DLNQLNALSTMDTDTIRKLPTHHVIILAKNDIGRVNMYRLVSWSHL-EYYARRPRIPKSL 769

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY--- 192
            L++   EGLI+ +   +G + +A    +      RL++F        Y+ +Q        
Sbjct: 770  LEKY-REGLIIGSACEAGELYQALLRGAPDTEIARLVSFYD------YLEIQPLGNNAFM 822

Query: 193  --DR-----------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              D                ++V+L       + AT +  FL  +D E +  ++       
Sbjct: 823  LRDEKSTVKSQEDLIEINKKIVELGMQFNKLVCATCDVHFLDPQD-EVYRRIIMAGQGFK 881

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             S    P                      +A E  +   R+ + + +  AP+ P      
Sbjct: 882  DSDDQAPLYLRTTEEMLEEFSYLG---PDKAHEVVITNTRKIADMCEKIAPVRPDKCPPV 938

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +D  K     L             +         +    RL+ EL+ I    F+  ++I
Sbjct: 939  IEDSDKT----LTKICYDRAHEMYGEDL------PKIVVDRLERELHSIITNGFAVMYII 988

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------- 399
                +  + ++   VG  RGS   S  A    IT+++PL                     
Sbjct: 989  AQKLVWKSNEDGYLVG-SRGSVGSSFVATMSGITEVNPLSPHYHCPKCRYYDFDSEEVKQ 1047

Query: 400  -------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                     F + FE FL       PD D++F  + + +   Y 
Sbjct: 1048 FSGMAGCDMPDKECPVCGTPLEKDGFDIPFETFLGFKGDKEPDIDLNFSGEYQSKAHDYT 1107

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            +  +G  +  +  T G+L  K A   V +  +                            
Sbjct: 1108 EVIFGKGQTFRAGTIGTLADKTAFGYVKKYYE---------------------------- 1139

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRSD 552
                   R        +  I Q   G+ R    H  GI++      +    P+       
Sbjct: 1140 ------ERGTRKRNCEINRIVQGCVGVRRTTGQHPGGIIVLPLGEEIYSFTPVQHPANDM 1193

Query: 553  LP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
                VT           L+K D LG    T+++   D +        +  IP D  E   
Sbjct: 1194 TTSTVTTHFDYHSIDHNLLKLDILGHDDPTMIRMLQDLI----GIDPVKDIPLDSREVMS 1249

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L      LGI   +  G         P+   D    + L       + +V          
Sbjct: 1250 LFQDTSALGIMP-DDIGGCPLGALGVPEFGTDFAMQMLLDTKPKYFSDLVRIAGLAHGTD 1308

Query: 671  IVSIH-PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
            +   +   +    K T    I     + +  +  G     +  +  ++ K    + +   
Sbjct: 1309 VWLGNAQTLIQEGKATIQTAICTRDDIMVYLIAQGLEQGLSFTIMESVRKGKGLKPE--- 1365

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              +      +G+ +    +  ++      Y F K+HAAAY +++++ A+ K  YP+ + A
Sbjct: 1366 --WEEEMKAHGVPEWYIWSCKKI-----KYMFPKAHAAAYVMMAWRIAYCKIFYPLAYYA 1418

Query: 790  ASMTLEMDNVEK---------------------------------IKKFCQDARQFNIQI 816
            A  ++                                          +  Q+        
Sbjct: 1419 AFFSIRASAFSYEIMCQGRDKLEYYLADYKKRADTLSKKEQDTLRDMRIVQEMYARGFDF 1478

Query: 817  MPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
             P  +       F++ D ++  SL++I G+G   A  +++A  D  F S+EDF +R    
Sbjct: 1479 TPIDIYRAKARHFQIIDGKLMPSLSSIDGLGEKAADAVVDAVKDGAFLSIEDFSNR---S 1535

Query: 876  KLN 878
            K+N
Sbjct: 1536 KVN 1538



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQP 69
           V L  H+  S ++G   + +I+ +      PA+A+TD   + +  +    A   G   + 
Sbjct: 456 VELHCHTKMSDMDGVSEVKSIIKRAKQWGMPAVAVTDHGCVQAFPDA-NHALDKGDTFKI 514

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           + G +  +       + N     F    
Sbjct: 515 LYGVEGYLVDDTKQLVENSRGQDFGDTF 542


>gi|325524834|gb|EGD02791.1| error-prone DNA polymerase [Burkholderia sp. TJI49]
          Length = 266

 Score =  207 bits (526), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 51/234 (21%), Positives = 90/234 (38%), Gaps = 10/234 (4%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P++  L   S++S L GA     ++++        +AITD  +L  A      A AAG+ 
Sbjct: 9   PAYAELFCRSNFSFLHGASHAEELVERAVKLGYRGLAITDECSLAGAPRMHVAAQAAGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIG   ++   +       G  P P    +VLL    EGY  L EL+S    +   K +
Sbjct: 69  LIIGSYFEVTPDE----APPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMAAPKGT 123

Query: 129 VRICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            ++    L     E   L  +    +  +    +   + V + ++  F+  FG+R  + L
Sbjct: 124 YQLTPRMLSRPPEEFAHLRGMPDCFAILVP--VYPVRADVLDAQVAWFRATFGERARLGL 181

Query: 187 -QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            Q  R  D  +  ++        + +VA  +            DV+ A+     
Sbjct: 182 VQLQRALDGPQRDEIRAAGARRGVRVVALGDVTMHRRSCKPLQDVMTAIRVGMP 235


>gi|331701344|ref|YP_004398303.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929]
 gi|329128687|gb|AEB73240.1| DNA polymerase III polC-type [Lactobacillus buchneri NRRL B-30929]
          Length = 1439

 Score =  207 bits (526), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 144/894 (16%), Positives = 298/894 (33%), Gaps = 159/894 (17%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
              Q N  MT+            +LL  T  G + + ++VS   +     +  R+  + L+
Sbjct: 592  HDQLNDHMTDNDAYRHARPSHAILLAKTQAGLKNMFKIVSLSNVK-YFYRVPRVPRTQLE 650

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY---VN--LQRHR 190
            +   +GLI+ +  SSG +  A        A ++   +   ++   R Y   +   L    
Sbjct: 651  KY-RDGLIVGSACSSGEVFTAMMQKGLDEARQKAGFYDYLEVQPKRAYAPLIESGLIADD 709

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                   + +V+L    + P+VAT +  +L+ +DY    +L+            +     
Sbjct: 710  ENLEQILTNMVKLGDELDKPVVATGDVHYLNPQDYIYRKILINSQGGA-NPLNRQELPDL 768

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                 +       F    +A E  V+   + +  ++   P+  +      +      E+E
Sbjct: 769  HFLTTDEMLSDFNFLGPEKAEEIVVDNTNQIADEIEDVHPLKDKLYTPRMEG----AEDE 824

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            ++++ +                  +    RLD EL  I    FS  +LI    +  + K+
Sbjct: 825  IKSRTMDTAHAWYGDPL------PKIVSDRLDKELKSIIGNGFSVIYLIAQRLVAKSNKD 878

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------- 399
               VG  RGS   S+ A    IT+++PL                                
Sbjct: 879  GYLVG-SRGSVGSSLVATLTGITEVNPLPPHYRCPNCQHTEFFTKGEYSSGYDLPHKKCP 937

Query: 400  ----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                       ++ FE FL      +PD D++F  D +     Y +  +G + V +  T 
Sbjct: 938  KCGTMMIGDGHNIPFETFLGFTGNKVPDIDLNFSGDYQPIAHNYTKVLFGEKNVFRAGTI 997

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G++  K A   V +A +    +V R                   ++ R            
Sbjct: 998  GTVADKTAYGYV-KAYERDKGEVYRQA-----------------EEDRL----------- 1028

Query: 510  RLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRSD---LPVTQFNMKWIE 564
                 ++   G+ R    H AGI  V     +    P+             T F+   I 
Sbjct: 1029 -----AKGATGVKRTTGQHPAGIIVVPDYMDIYDFTPIQYPADDQDAAWQTTHFDFHSIH 1083

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--Q 622
               ++K D LG    T+++     + Q    +D   IP DD     + ++   LG+   Q
Sbjct: 1084 D-NILKIDILGHDDPTMIR-----MLQDLSGIDPKTIPMDDPGVMSIFSSPKILGVTEDQ 1137

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
            ++S      +       +  ++       P     ++  +   +G +  +     +    
Sbjct: 1138 IQSKTGTLGVPEFGTRFVRGMLEQT---HPSNYSELLQISGLSHGTDVWMGNADELIKNG 1194

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
              T   +I     +    +  G     +  +  ++        D     + +   K  I 
Sbjct: 1195 TATIANVIGCRDNIMTDLINWGLDSELSFQIMESVRHGRGIPDD-----WQAEMKKAKIP 1249

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
                 +  ++      Y F ++HAAAY +++ + A+ K ++P+ + A+  ++  D+ + +
Sbjct: 1250 DWYIQSCLKI-----KYMFPRAHAAAYILMALRIAYFKVYFPMVYYASYFSVRADDFDIV 1304

Query: 803  KKFC---------------------QDARQFNIQIMPPSVNTPCVDFK------------ 829
                                     ++     +  +   +      F+            
Sbjct: 1305 SMCRGKEAVKNAMRMINDKGMEASTKEKNLLTVLELANEMLERGYHFQMVDLDKSDASQW 1364

Query: 830  -VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
             +  + +     ++ G+G   A+ I+ A  DKPF S ED   R    K+++ ++
Sbjct: 1365 LIDGDTLIAPFNSVPGLGLNVAKQIVAAREDKPFISKEDLAKR---GKVSKTLI 1415



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++   ++ +   +     Q A+AITD   +    +         I+ + 
Sbjct: 334 VELHLHTTMSQMDATNNIADFAKQAKHFGQKALAITDHAGVQGFPDAFHAGQKNDIKMLY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G ++++         N    P      +V 
Sbjct: 394 GVEINLVDDGVPITYNDKHVPLKDATYVVF 423


>gi|301300283|ref|ZP_07206492.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            salivarius ACS-116-V-Col5a]
 gi|300852124|gb|EFK79799.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            salivarius ACS-116-V-Col5a]
          Length = 1444

 Score =  207 bits (526), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 138/893 (15%), Positives = 286/893 (32%), Gaps = 165/893 (18%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            Q+      N  +              ++L  T EG + L +L S   ++    +  R+  
Sbjct: 593  QILYHDDFNKHVGENDAYKHEHPSHAIILAKTQEGLKNLFKLTSES-MVKYFYRVPRVPR 651

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
            S L++   EGLI+ +  + G +  A       +A+++   +        Y+ +Q    Y+
Sbjct: 652  SILEKY-REGLIVGSACADGEVFTAMMQKGYTIAKQKAEFYD-------YLEVQPKPLYE 703

Query: 194  --------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
                              + +V+LA+  + P+VAT +  F+++ED     +L+       
Sbjct: 704  PLLEQELVKDNDNLEEIITNMVKLAHELDKPIVATGDVHFMNKEDAIYRKILIHSQAGAN 763

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
               + +          +       F     A E  V    +    +    P+  +    +
Sbjct: 764  PLNRLKKLPDAHFRTTDEMLEEFSFLGEDIAKEIVVTNPNKLVDEISEITPVKDKLYTPK 823

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +      E ++ +  +                  +  ++RLD EL  +    FS  +LI
Sbjct: 824  MEG----AEQDIHDLTMNRAHAWYGD------TLPEIVQKRLDKELKSVIGNGFSVIYLI 873

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------- 399
                +  + K+   VG  RGS   S+ A    IT+++PL                     
Sbjct: 874  SQKLVYKSNKDGYLVG-SRGSVGSSLVATMTGITEVNPLPPHYRCPKCKWTHFYEKGEYG 932

Query: 400  ---------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
                                   + FE FL      +PD D++F  D +     Y +  +
Sbjct: 933  SGYDLPDKDCPNCGTELIKDGQDIPFETFLGFKGNKVPDIDLNFSGDYQPIAHNYTKVLF 992

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G   V +  T G++  K A   V +A +    Q  R  +                     
Sbjct: 993  GENNVYRAGTIGTVADKTAYGYV-KAYERDTEQNFRGAE--------------------- 1030

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRSDLPVT 556
                        +  +++   G+ R    H AGI  V     +    P+      D    
Sbjct: 1031 ------------IDRLAKGATGVKRTTGQHPAGILVVPDYMDIYDFTPIQYPA--DDLTA 1076

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             +     +   +   + L L  L     ++  + Q    +D   IP DD     L +   
Sbjct: 1077 AWRTTHFDFHSIH-DNILKLDILGHDDPTMIRMLQDLSGIDPKTIPTDDPGVMALFSGTD 1135

Query: 617  TLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
             LG+   +++SS     +       +  ++       P     ++  +   +G +  +  
Sbjct: 1136 ILGVTPEEIQSSTGTLGVPEFGTRFVRGMLEET---HPKTFAELLKISGLSHGTDVWLGN 1192

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
               +      T   +I     + +  +  G    +A  +   + K      +     + +
Sbjct: 1193 AEELIKNGTVTMPDVIGCRDDIMMDLIHMGVESDKAFKIMEHVRKGRGIPDE-----WQA 1247

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
                  + +       ++      Y F K+HAAAY +++ + A+ K +YP+ + AA  ++
Sbjct: 1248 DMRAADVPEWYIGACLKI-----KYMFPKAHAAAYVLMALRIAYFKVYYPLVYYAAYFSV 1302

Query: 795  EMDNVE---------------------------------KIKKFCQDARQFNIQIMPPSV 821
              D+ +                                  + +   +  +         +
Sbjct: 1303 RADDFDLASMSRGKEAVKNAMELINSKGNEATTKEKNLLTVLEIANEMLERGFDFSMVDI 1362

Query: 822  NTP-CVDFKVGDNR--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            N     ++ + ++   +     AI G+G   A+ I+ A  ++ F S ED   R
Sbjct: 1363 NKSDAQNWTIQEDGRTLLAPFTAIPGLGLNVAKQIVAAREEQEFISKEDLSKR 1415



 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS+ S+++   S+   + K A     AIAITD   L +  E         ++ + 
Sbjct: 340 VELHLHSNMSMMDATNSITEYVSKAAEWGHKAIAITDHGTLQAFPEAHAAGQKNNVKILY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          ++ 
Sbjct: 400 GVEANIVDDGVPIAYNEQHKNLRDATYVIF 429


>gi|182419729|ref|ZP_02950970.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            butyricum 5521]
 gi|237665534|ref|ZP_04525522.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            butyricum E4 str. BoNT E BL5262]
 gi|182376466|gb|EDT74047.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            butyricum 5521]
 gi|237658481|gb|EEP56033.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            butyricum E4 str. BoNT E BL5262]
          Length = 1472

 Score =  207 bits (526), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 139/899 (15%), Positives = 284/899 (31%), Gaps = 175/899 (19%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                 ++L     G + L +LVS  +L D   +  RI  S  ++  +EGLI+ +  S G 
Sbjct: 637  RTHHAIILAKDYTGLKNLYKLVSYSHL-DYFYKKPRILKSMFKKY-SEGLILGSACSEGE 694

Query: 155  IDRAFFFNS-SQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQ 199
            + ++       +  E     +        Y+ +Q     D              +    +
Sbjct: 695  LFQSILLGKSDEEIENIAKDYD-------YLEIQPIGNDDYLIRNEQVPNKEYIKEINRK 747

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            ++ L       +VAT +  F+  ED E +  ++        +    P             
Sbjct: 748  IISLGEKLGKLVVATGDVHFMDPED-EIYRRILEAGQGFKDADMQAPLYLKTTEEMLEEF 806

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
                     +A E  V    + S + +  +PI P       D  ++  ++    KA    
Sbjct: 807  SYLGEE---KAYEVVVTNTNKISEMCEQISPISPEKCPPHIDGCEQTIKDIAYGKAHE-- 861

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                    +      +  + RL+ EL+ I +  FS  ++I    +  +  +   VG  RG
Sbjct: 862  --------LYGENLPKIVKDRLEKELDSIIKNGFSVMYIIAQKLVWKSNDDGYLVG-SRG 912

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   SV AY   IT+++ L                                         
Sbjct: 913  SVGSSVVAYMTGITEVNALPPHYRCPKCKYSDFNDYGSKNGFDLPDKVCPACGENMDKDG 972

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + FE FL  +    PD D++F  + + +  +Y +  +G     +  T G++  K A  
Sbjct: 973  MDIPFETFLGFNGDKEPDIDLNFSGEYQAKAHKYTEVIFGKGTTFKAGTIGTIAEKTAFG 1032

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V +  +     + +                                    +  I++   
Sbjct: 1033 YVKKYYEEKSQTITKA----------------------------------EITRIAKGCT 1058

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H  GI++    R + +  P+     D  SD+  T F+   I+       + L
Sbjct: 1059 GIKRTTGQHPGGIIVVPKGREIFEFCPVQHPADDPDSDIITTHFDYHSID------QNLL 1112

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
             L  L     ++  + Q    ++   IP DD ET  L ++        +    +   +  
Sbjct: 1113 KLDILGHDDPTVIRMLQDITGINPHTIPLDDKETMSLFSST---TALGVTPEQINSKVGT 1169

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYNNR--KNGKEKIVSIHPLIDPMLKET--QGVII 690
                          L    P     +       +G +  +     +      T     + 
Sbjct: 1170 FGIPEFGTKFVRGMLVDTLPKTFSDLLCISGLSHGTDVWLGNAKDLIDTGVITSISDAVC 1229

Query: 691  YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
             ++ +  +  +      + A  +   + K    +  ++   + +   +N + +    +  
Sbjct: 1230 CRDDI-MVYLIKMNLPPNTAFKIMELVRKGQALKNPEKWAEYEALMRENDVPEWYIDSCK 1288

Query: 751  ELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ--- 807
            ++      Y F K+HAAAY +++++ AW K H P  + AA  ++     +          
Sbjct: 1289 KI-----KYMFPKAHAAAYVMMAFRIAWFKVHIPKAYYAAYFSIRAKAFDAEFMIFGKDR 1343

Query: 808  ------------------------------DARQFNIQIMPPSVNTPCV-DFKVGDNRIY 836
                                          +  +   + +P  +       FKV +  + 
Sbjct: 1344 VKEKMAEILAQGNDAAPKDKDMYDDLEIVLEMYERGFKFLPIDLYKSDATKFKVEEEGLR 1403

Query: 837  YSLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              L +I G+G+  A  I     + +P  S+++   R    K+     + L   G L+  
Sbjct: 1404 PPLNSIAGMGSVAAESIYATVHEIEPISSVDNLKKRA---KIGNSATDLLRKFGCLNGM 1459



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 2/91 (2%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-CAA-GIQP 69
           V L +H+  S ++   S  +++ +  +    +IAITD   + +  E  +        ++ 
Sbjct: 359 VELHMHTKMSQMDAMSSAGDLIKRAMSWGMKSIAITDHGVVQAFPEAHKLLGRDNPDMKI 418

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           I G +  +       + N        +  ++
Sbjct: 419 IYGVEAYLAPDKKPSVKNIKGQSIDDIYCVL 449


>gi|289434601|ref|YP_003464473.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            seeligeri serovar 1/2b str. SLCC3954]
 gi|289170845|emb|CBH27387.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            seeligeri serovar 1/2b str. SLCC3954]
          Length = 1444

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 150/919 (16%), Positives = 284/919 (30%), Gaps = 177/919 (19%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +D     N  M               +   TA G + L +L++   + +   +  RI  
Sbjct: 596  DIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYFYRVPRIPR 654

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NL 186
            S L+++  EGLI+ T  S G +  A      Q AEK    +   ++    +Y       L
Sbjct: 655  SQLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVADFYDFIEIQPKPVYAPLIEREL 713

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R           +V++      P+VAT N  +      + +  ++  +           
Sbjct: 714  VRDEKALEEILKNIVRVGEKAGKPVVATGNVHYKDP-VDKIYRKILIHSQGGANPLNRAE 772

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                     +       F    +A E  V  +      ++   PI       + D     
Sbjct: 773  LPDVHFRSTDEMLKEFAFLGEEKAKEVVVTNSNLVVDWIEDLKPIKDELYTPKIDG---- 828

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+E+RN + +       +         +    RL+ EL  I    F+  +LI    ++ 
Sbjct: 829  AEDEVRNMSYSMAHQLYGE------TLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKK 882

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            +  +   VG  RGS   S  A    IT+++PL                            
Sbjct: 883  SLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKHSEFFDDGSIGSGFDLPD 941

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL      +PD D++F  D +     Y +  +G + V +
Sbjct: 942  KDCPHCETAYQKDGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFR 1001

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V               +    +    +    I             
Sbjct: 1002 AGTIGTVAEKTAFGYV---------------RNYEREMNMTIRGAEIDR----------- 1035

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVR---SDLPVTQFNM 560
                    +     G+ R    H  GI+       +    P+        S+   T F+ 
Sbjct: 1036 --------LVAGCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATDSEWKTTHFDF 1087

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY----------- 609
              I    ++K D LG    T ++   D          +     D  + +           
Sbjct: 1088 HSIHD-NVLKLDILGHDDPTAIRMLQDLSG--IDPKTIPTDDPDVMKLFGSTESLGVKPA 1144

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             + +  GTLGI +  +  +RQ LE  +P    +++ +  L                N +E
Sbjct: 1145 DIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG-------TDVWLGNAEE 1197

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I +    +  ++     ++++         +  G   S A  +  ++ K      + ++
Sbjct: 1198 LIKNKTCELPEVIGCRDDIMVFL--------IYQGLESSLAFKIMESVRKGKGLTEEMEE 1249

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
                +               +    K   Y F K+HAAAY +++ + A+ K H+P+ F A
Sbjct: 1250 AMMANK----------VPLWYIESCKKIKYMFPKAHAAAYVLMAVRIAYFKVHHPLFFYA 1299

Query: 790  ASMTLEMDNVEKIKK---------------------------------FCQDARQFNIQI 816
               T+  D+ +                                        +        
Sbjct: 1300 TYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHF 1359

Query: 817  MPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +     D F +  + +     AI  +GT  A+ I+ A  +  F S ED   R    
Sbjct: 1360 QKVDLYKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQR---G 1416

Query: 876  KLNRRVLESLVFAGALDCF 894
            K+++ +++ +   G L+  
Sbjct: 1417 KVSKTIIQYMDDQGCLEGL 1435



 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 342 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 401

Query: 72  GCQLDIDMQD 81
           G + ++    
Sbjct: 402 GIEANLIDDG 411


>gi|157363106|ref|YP_001469873.1| DNA polymerase III PolC [Thermotoga lettingae TMO]
 gi|157313710|gb|ABV32809.1| DNA polymerase III, alpha subunit [Thermotoga lettingae TMO]
          Length = 1379

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 157/905 (17%), Positives = 305/905 (33%), Gaps = 181/905 (20%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
              ++   +  +            ++V T EG + L +L+S  ++        RI  S LQ
Sbjct: 539  TFKEIESLQKESTLRQSKPFHTTIIVQTKEGLKNLYKLISNAHVK-YFYSVPRIPKSELQ 597

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFK--KLFGDRLY-----VNLQRH 189
             +   GL++ +    G + +      +    E+++  +   ++    L      + L R 
Sbjct: 598  ALRA-GLLIGSACVGGELIQEMLTGANESEIEEKMAFYDFVEVMPLDLLPVTNDLGLTRE 656

Query: 190  RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
            R  + Y   ++ ++A    +P+V T +  FL  ED +   VL A     +  Q      T
Sbjct: 657  RLKELYI--KLYEIARKINVPVVMTGDVHFLDPEDEKIRKVLQAPQQENISEQPAAYLRT 714

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
             D  LK     + IF D  +A +  VE   + +  ++   P+  +      +      E+
Sbjct: 715  TDEMLK---AALEIFEDTNKAYKVVVEFPNQIAESVEKIVPLEKKLHTPRIEG----AED 767

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            ++R  A+   E              +   +RL+ EL+ I    ++  +LI    +  +  
Sbjct: 768  QVRTIAMQRAEQLYGTPL------PELVERRLNRELDAIINHGYAVLYLIAKKMVDKSLN 821

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------ 399
            +   VG  RGS   S  AY + IT+++PL                               
Sbjct: 822  DGYVVG-SRGSVGSSFIAYLMGITEVNPLPPHYFCSKCRYVEFIESNEYGSGYDLPVKIC 880

Query: 400  -----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
                         + FE F+  +   +PD D++F  D +DE  R+++  +G + V +  T
Sbjct: 881  PSCGEPLNRNGQDIPFETFMGFEGDKVPDIDLNFSGDYQDEAHRFIETLFGKQHVYRAGT 940

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
              ++ ++ A   V               +         V                     
Sbjct: 941  INTIASRTAFGFV---------------RAYEEKSGRKVRKSEAER-------------- 971

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRSDLPVTQFNMKWIEKA 566
                 ++  + G+ R    H  G++I      +    P+     +   +        E  
Sbjct: 972  -----LANAITGVKRTTGQHPGGLMIIPKEYEVYDFTPIQHPANTKEAMVLTTHFDYESI 1026

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG---------- 616
                 D + +  L     +   + +    +D   IP DD +T  L ++            
Sbjct: 1027 H---DDLVKIDALGHDDPTFIKILKDMTNIDPMKIPMDDEKTLKLFSSVEHLGIKPEELG 1083

Query: 617  ----TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
                TLGI +  +  +R  L   +P    +++ +  L                N +E I 
Sbjct: 1084 TDVGTLGIPEFGTQFVRGMLSETRPKSFAELVRISGLSHG-------TDVWLNNAQEWIR 1136

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
              H  +  ++     ++ Y         +  G + S+A  +   + K      + +    
Sbjct: 1137 QKHATLSDVIACRDDIMNYL--------IKKGMNASKAFKIMENVRKGKGLSREDE---- 1184

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
                 K  I +    +   +      Y F K+HA AY  ++++ A+ K H+P+ F AA  
Sbjct: 1185 -EELKKLKIPEWYIESCKRI-----KYLFPKAHATAYVSMAFRIAYFKVHHPLAFYAAYF 1238

Query: 793  TLEMDNVEKIKKFCQ--------------------------------DARQFNIQIMPPS 820
            TL+ D  +                                       +        +P +
Sbjct: 1239 TLKGDEFDLEAAMHGPEIVKKKLEELSGINDKDVRERAKETTLEVMLEMFLRGFSFLPVN 1298

Query: 821  VNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            VN      F + +N++      +  +G   A  I+ A  +KPF SLED   R    K+N+
Sbjct: 1299 VNKSHARLFLIEENKLRIPFNKLPNLGDNVAESIIAARREKPFTSLEDIVRRT---KMNK 1355

Query: 880  RVLES 884
              +ES
Sbjct: 1356 SHIES 1360



 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS +S L+  L ++  +++ ++    +IA+TD   +     F +      I+PI 
Sbjct: 283 VELHAHSKFSDLDSVLDIDEYVNRASSWGWKSIALTDHGVVQGIPYFYEACRKKDIKPIF 342

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G +  +       +    K         V+
Sbjct: 343 GVEAYVVNDSEPVVIGMDKDIEIDQERYVI 372


>gi|75677041|ref|YP_319462.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Nitrobacter
            winogradskyi Nb-255]
 gi|74421911|gb|ABA06110.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Nitrobacter
            winogradskyi Nb-255]
          Length = 409

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 59/310 (19%), Positives = 114/310 (36%), Gaps = 28/310 (9%)

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
               NG  +  A   F  +  F  YGF +S+AA++A+++Y ++W+K H+P  F AA +  +
Sbjct: 1    MIANGYDRDFAERTFSQIEGFGSYGFPESYAASFALLAYASSWLKCHHPDVFCAALLNAQ 60

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG------DNRIYYSLAAIKGVGTTT 849
                    +  +DA++  +++ P  VN    D  +          +   +  +KG+    
Sbjct: 61   PMGFCAPAQIVRDAKEHGVEVHPVCVNASRWDCTLEMTGCEDRFAVRLGMRMVKGLANAD 120

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD-CFGYSRMQLLQSLDNI 908
            A  I+    + PF S++D   R     +    L  L  A A     G  R   L ++  +
Sbjct: 121  AAAIIATRGEAPFISVDDLSRRAS---VPAASLVQLADADAFRESLGLPRRDALWAIRAL 177

Query: 909  QKYAQWVEKNRTNKHENIFAHEKG-----TFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
            +                +FA             +          +      +   +G   
Sbjct: 178  RDT-----------PLPLFAAAARREAATVPEIREPAVALRPMTAGAEVVEDYGHVGLTL 226

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
              HP+   +  L +  I    E++A   G     A +V+ +Q   + KG  + ++T  + 
Sbjct: 227  RHHPVSFLRGDLARRRIVPCAEAMAARDGRWCEAAGIVLVRQMPGSAKG--VMFITIEDE 284

Query: 1024 AKEYEANFFP 1033
                    +P
Sbjct: 285  TGIANVVVWP 294


>gi|269123116|ref|YP_003305693.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM
            12112]
 gi|268314442|gb|ACZ00816.1| DNA polymerase III, alpha subunit [Streptobacillus moniliformis DSM
            12112]
          Length = 1465

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 154/920 (16%), Positives = 310/920 (33%), Gaps = 137/920 (14%)

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            ++   ++    + K       +I +LV    G +RL ELVS  +L   G++  RI  + L
Sbjct: 571  VEKLTDVSEKLEKKPKIADTENITILVKNLAGLKRLYELVSISHLKYYGEKKPRILKTDL 630

Query: 137  QEIGTEGLIMLTGGSSG------PIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY---VN 185
            ++     LI  +   SG       +       S +   ++L  +   +++   +Y   + 
Sbjct: 631  EKDRENFLISSSPIYSGRFNKGKLVSLYVRGISREEIMQQLDFYDYVQVYPRCIYNDAIE 690

Query: 186  LQRHRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            ++   GY+         VQ+A      +VAT N  +L + D        A+   +  + +
Sbjct: 691  MEEISGYEFIEQMNKDFVQMAKEKNKLVVATGNVYYLDDRDK---KSKAALLLGSDRAFR 747

Query: 244  DRPRVTPDHYLKNRSEMVSIFS-DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                 T ++Y      +      +  +  +  +    + +  ++   PI     +   + 
Sbjct: 748  TYQIDTGNYYRTTEEMLDEFSYLNEEDIKDVVIYNTHKINDQIEKIKPIPDGDYKPVMEG 807

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
                 E+E+RN                     +    R+  EL+ I    F+  +LI   
Sbjct: 808  ----AEDEVRNMTYNKAYELYGNPL------PEAVETRVKRELDSIIGNGFAVLYLIAQK 857

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------- 399
             ++ +  N   VG  RGS   S+ AY + IT+++ L                        
Sbjct: 858  LVKKSVDNGYLVG-SRGSVGSSLVAYFMGITEVNALYPHYRCEECKYFEMKDFEGSGVDL 916

Query: 400  ----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                             S+ FE F+       PD D++F  + + E+ +Y +  +G + V
Sbjct: 917  EEKNCPKCNSKLIRDGHSIPFEVFMGFKGDKTPDIDLNFSGEYQGEIHKYTKELFGDDYV 976

Query: 444  AQIITFGSLQAKAALRDVGRALQMP--YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
             +  T   L  K A     +  +          +             +   +++ +  E 
Sbjct: 977  FRAGTISGLAEKNAYTTAKKYFEENIKKDFEKEIYNKYKTSLKKLDPITRSSEEKKLEER 1036

Query: 502  RLADPSVDR--LLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLP 554
                 + ++  +  I+ K  G  +    H  G++     + +    P+            
Sbjct: 1037 INDYCNKNKAEIYRIATKCTGARKTTGQHPGGMIVVPDYKSIYDFTPVQYPANDESSGSI 1096

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT 614
             T F+   +    L+K D LG    T L+     + Q    VD+  IP  D +   +  +
Sbjct: 1097 TTHFDYHVM-DQQLVKLDILGHDDPTTLR-----MLQDLTNVDIYNIPLTDPKVISIFNS 1150

Query: 615  KGTLGIF--QLESSGMRQALEGMQPDCIEDIIALV--SLYRPGPIDNIVVYNNRKNGKEK 670
               LG+   Q+ S      +     D ++ ++     + +      + + +         
Sbjct: 1151 TEALGVSEEQIGSKMGTNGIPEFGTDFVKKMLEDTLPTTFAELVRISGLSHGTDVWLNNA 1210

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
               +   I      T   +I     +    +  G   SEA  +   + K    +  ++ E
Sbjct: 1211 QEYVREGIA-----TLSEVITVRDDIMNRLIDKGMDKSEAFNIMEFVRKGQPSKNKEKWE 1265

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            ++      + I +    +  ++      Y F K HA AY +++ + A+ K  YP+EF  A
Sbjct: 1266 QYKEIMKASNIDEWYIESCEKI-----KYMFPKGHAVAYVMMAVRIAYFKVFYPLEFYTA 1320

Query: 791  SMTLEMDNVEKIKKFCQ----------------------------------DARQFNIQI 816
             +  +  +    K F                                    +     I++
Sbjct: 1321 FLNRKYADFSFEKMFGSIDEVKMNLQKLKELETRDLKVLDKKQIILLEILVEMHYRGIEL 1380

Query: 817  MPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            +   +     + F + D +I   L A+  +G   AR I E    K F S+ED   R    
Sbjct: 1381 LNIDIYKSDSMKFTIEDGKIRLPLIAMDQLGEVVARTIAEEREIKEFTSIEDLTKRC--- 1437

Query: 876  KLNRRVLESLVFAGALDCFG 895
            ++ + VLE+L       C G
Sbjct: 1438 RIPKTVLETLK---CFGCIG 1454



 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 31/98 (31%), Gaps = 10/98 (10%)

Query: 12  VHLQVHSSYS-LLEGALSLNN-----ILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           + L  H++ S +L   +   +     ++++       A+A+TD   +  A  F       
Sbjct: 312 IELAAHTNMSDML-STIEPKSGKEGSLVNRAREFGHKAVAVTDYGVVH-AFPFVATGIKE 369

Query: 66  G--IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
               + I G +  +       +             +V 
Sbjct: 370 DEEFKVIYGMEAYMVDDSAPLIVKAKDVFIEEEEFVVF 407


>gi|642270|emb|CAA88043.1| DNA polymerase III [Staphylococcus aureus]
          Length = 1415

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 157/939 (16%), Positives = 295/939 (31%), Gaps = 198/939 (21%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++  Q+    G+       L+   + N K++N+          + L+V   +G + L ++
Sbjct: 577  IKMVQQMKELGV-------LN-HNEINKKLSNEDAYKRARPSHVTLIVQNQQGLKNLFKI 628

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF- 174
            VS   L+    ++ RI  S L E   EGL++ T    G +  A         EK    + 
Sbjct: 629  VSAS-LVKYFYRTPRIPRSLLDEY-REGLLVGTACDEGELFTAVMQKDQSQVEKIAKYYD 686

Query: 175  -KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
              ++    LY       L R          +++    T  +P++AT N+ +L E D  A 
Sbjct: 687  FIEIQPPALYQDLIDRELIRDTETLHEIYQRLIHAGDTAGIPVIATGNAHYLFEHDGIAR 746

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+A      +               +       F    +A E  V+     +  ++  
Sbjct: 747  KILIASQPGNPL--NRSTLPEAHFRTTDEMLNEFHFLGEEKAHEIVVKNTNELADRIERV 804

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
             PI         +        E+R  + A       +         Q    RL+ EL  I
Sbjct: 805  VPIKDELYTPRMEG----ANEEIRELSYANARKLYGEDL------PQIVIDRLEKELKSI 854

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                F+  +LI    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 855  IGNGFAVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYICPNCK 913

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE+FL      +PD D++F  + +
Sbjct: 914  TSEFFNDGSVGSGFDLPDKTCETCGAPLIKEGQDIPFEKFLGFKGDKVPDIDLNFSGEYQ 973

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y +  +G ++V +  T G++  K A   V               K   ND     
Sbjct: 974  PNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYV---------------KGYLNDQGIHK 1018

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                I                                       +V G   +    P+  
Sbjct: 1019 RGAEID-------------------------------------RLVKGYMDIYDFTPIQY 1041

Query: 548  DVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA--------QRGVKV 596
                       T F+   I    ++K D LG    T+++   D                +
Sbjct: 1042 PADDQNSAWMTTHFDFHSIHD-NVLKLDILGHDDPTMIRMLQDLSGIDPKTIPVDDKEVM 1100

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             +   P     T   +  K             RQ LE  +P    +++ +  L       
Sbjct: 1101 QIFSTPESLGVTEDEILCKTGTFGVPNSDRIRRQMLEDTKPTTFSELVQISGLSHG---- 1156

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
                     N +E I +    +  ++     +++Y         + +G   S A  +  +
Sbjct: 1157 ---TDVWLGNAQELIKTGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAFKIMES 1205

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            + K      +      I    +N +      +  ++      Y F K+HAAAY +++ + 
Sbjct: 1206 VRKGKGLTEE-----MIETMKENEVPDWYLDSCLKI-----KYIFPKAHAAAYVLMAVRI 1255

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKK-------------------------------- 804
            A+ K H+P+ + A+  T+   + + I                                  
Sbjct: 1256 AYFKVHHPLYYYASYFTIRASDFDLITMIKDKTSIRNTVKDMYSRYMDLGKKEKDVLTVL 1315

Query: 805  -FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
                +      ++ P S+      +F +  + +     ++ G+G   A+ I+EA  D PF
Sbjct: 1316 EIMNEMAHRGYRMQPISLEKSQAFEFIIEGDTLIPPFISVPGLGENVAKRIVEARDDGPF 1375

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             S ED   +    +   +++E L   G+L      + QL
Sbjct: 1376 LSKEDLNKKAGLYQ---KIIEYLDELGSLPNL-PDKAQL 1410



 Score = 87.9 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 12/178 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G  ++   + + A    PAIA+TD N + +  +    A   GI+ I 
Sbjct: 334 VEFHLHTAMSQMDGIPNIGAYVKQAADWGHPAIAVTDHNVVQAFPDAHAAAEKHGIKMIY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI-ELVSRMYLLDQGKQSVR 130
           G +  +                     +V  V T  G      +++    +       + 
Sbjct: 394 GMEGMLVDDGVPIAYKPQDVVLKDATYVVFDVET-TGLSNQYDKIIELAAVKVH-NGEII 451

Query: 131 ICLSWLQEIG---TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                        +E +I LT  +   +  A         E+ L  FK+  GD ++V 
Sbjct: 452 DKFERFSNPHERLSETIINLTHITDDMLVDA------PEIEEVLTEFKEWVGDAIFVA 503


>gi|304404288|ref|ZP_07385950.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus YK9]
 gi|304347266|gb|EFM13098.1| DNA polymerase III, alpha subunit [Paenibacillus curdlanolyticus YK9]
          Length = 1439

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 148/937 (15%), Positives = 298/937 (31%), Gaps = 175/937 (18%)

Query: 50   NNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
              LF  +                 + ++     L                 +    A G 
Sbjct: 577  GVLFGLI------KDCN-------ERNVTGLHQLNDYVGLDLSNSRPFHCGIYALNAVGK 623

Query: 110  QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
            + L +L+S  +  +  K+   I  S L E+  EGL++++G   G    +    + + AE 
Sbjct: 624  KNLFKLISLSHT-EHFKRVACIPKSKLTEL-REGLLIISGCEKGEFFESVLNKTEEEAED 681

Query: 170  RLLTFK--KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
                +   ++     Y+      L   R        +VV++    +  ++AT N  +L+ 
Sbjct: 682  VAQYYDVLEIQPVDFYMHLVEKGLVGSRAEIEEALRRVVRIGKKLDKMVIATGNVHYLNP 741

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
             D    D+ +         +  R +        +       F    +A E  V      +
Sbjct: 742  RDKVFRDITIQGITGFSPLKGMR-KPDAHFRTTDEMLREFAFLGEEKAFEVVVRNTNELA 800

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
               +       +      +      E E+R       +                  QRL+
Sbjct: 801  DRFEKFDMFPSKLFTPIIEG----AEEEIRATCYDTAKRLYGD------EVPDVIVQRLE 850

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--- 399
             EL  I    FS  +LI    ++ + ++   VG  RGS   SV A  L I++++PL    
Sbjct: 851  KELVPIIGYGFSANYLISERLVKKSNQDGYLVG-SRGSVGSSVVATFLGISEVNPLPPHY 909

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL      +PD D
Sbjct: 910  LCPNTACKHSEWFLDGSIRSGFDLPNKACPNCGTNMKGEGQDIPFETFLGFKGDKVPDID 969

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  + +     Y +  +G + V +  T G++  K A                   K  
Sbjct: 970  LNFSGEYQPIAHNYTKIMFGDKNVFRAGTIGTVAEKTAYG---------------FAKKY 1014

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
              +         ++                    ++    G+ R +  H  GIV+    +
Sbjct: 1015 EEEQGKKWRGAELSR-------------------LASGCTGVKRSSGQHPGGIVVVPDYI 1055

Query: 540  S--QLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
                + P+         +   T F+    E+  L+K D LG    T+++     + Q   
Sbjct: 1056 EVEDVTPVQYPADDVNAEWKTTHFDYHAFEE-NLLKLDILGHDDPTMMR-----MLQDLT 1109

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             VD + IP +D +   +  +   LG+   Q+ S+     +  M    +  ++      +P
Sbjct: 1110 GVDPTTIPMNDPKVMSMFNSTDALGVLPQQIRSAVATYGVPEMGTKFVRQMLEET---KP 1166

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV-IIYQEQVMQIAQLLSGYSLSEAD 711
                +++  +   +G    +     +      T    I  ++++M      +G   + A 
Sbjct: 1167 STFADLLQISGLSHGTGVWLGNAQELIKNNTCTIKTVIGCRDEIMLFLIYKAGMDAALAF 1226

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
             +  ++ K      +     +I    +  + +    +  ++     +Y F K+HAAAY +
Sbjct: 1227 KITESVRKGRGLTPE-----WIEEMKRCKVPQWYIDSCLKI-----EYMFPKAHAAAYVI 1276

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVE------------------------------- 800
             + +TA+ K ++P+E+ A   T+  ++ +                               
Sbjct: 1277 SAVRTAFFKLYHPIEYYATYFTVRAEDFDLDLLCQGYDAIMRKLVEIEEKGFNATPKEKN 1336

Query: 801  --KIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
               + +   +         P  +       F V    +    AAI G+G   AR+I  + 
Sbjct: 1337 SVSLLEMALEMTARGFSFKPIDLYRSDATKFIVDGQSLIPPFAAIAGIGDNAARNIAASR 1396

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             D  + S+EDF  +    K  + ++E L   G     
Sbjct: 1397 DDGEYLSIEDFQMK---SKATKTIIEVLGSMGCFRGL 1430



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +HS+ S ++   S+++ +   A     AIA+TD +N+    E ++ A   GI  + 
Sbjct: 337 VEFHLHSTMSTMDAVASISDYVKTAAKWGHKAIAVTDHSNVHCYPEAAKAAKKHGINVLF 396

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       + +  +        +V 
Sbjct: 397 GLEANVINDAVPMVIHPREETLADAEYVVF 426


>gi|304384865|ref|ZP_07367211.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284]
 gi|304329059|gb|EFL96279.1| DNA polymerase III PolC [Pediococcus acidilactici DSM 20284]
          Length = 1436

 Score =  206 bits (524), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 145/890 (16%), Positives = 276/890 (31%), Gaps = 164/890 (18%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            ++   Q N  MT             VL+  T  G + L +LVS   +     +  RI  S
Sbjct: 589  IEYHDQLNDHMTENDAYKHARPNHAVLIAKTQAGLKNLFKLVSLSNVK-YFYRVPRIPRS 647

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD- 193
             L+ +  EG+I+ +  SSG +  A        A  R   +        Y+ +     Y  
Sbjct: 648  ELERL-REGIIVGSACSSGEVFTAMAQKGYVEARDRAKFYD-------YLEVMPKPVYQP 699

Query: 194  -------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                               +V+L    ++P+VAT +  +L+ +D     +L+        
Sbjct: 700  LIDQEIVSDTNKLEEIIGNIVKLGKDLDIPVVATGDVHYLNPQDAIYRKILINSQGGANP 759

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              +            +       F     A +  VE   + +  +   +P+  +    + 
Sbjct: 760  LNRT-ELPDVHFRTTDEMLEAFRFLGEETAHQIVVENPNQIADSIDDISPVKDKLYTPKM 818

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                     E R K +A  +     G        +   +RLD EL  I    FS  +LI 
Sbjct: 819  PGA------EDRIKQLAMDQAHALYG----KELPEIVSERLDKELTSIIGNGFSVIYLIA 868

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               +  + K+   VG  RGS   S  A    IT+++PL                      
Sbjct: 869  QRLVHKSNKDGYLVG-SRGSVGSSFVATMSGITEVNPLPPHYRCPNCQYSHFYTKGEYGS 927

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  D +     Y+Q  +G
Sbjct: 928  GYDLPDKKCPECGTLMIGDGQDIPFETFLGFKGDKVPDIDLNFSGDYQPIAHNYMQVLFG 987

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
               V +  T G++  K A   V                                 +   R
Sbjct: 988  KNNVFRAGTIGTVADKTAYGYV--------------------------KAYERDTNQHLR 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG--DRPLSQLVPMYRDVRSDLPVTQ 557
             A         +  +++   G+ R    H AGI+I      +    P+      D     
Sbjct: 1022 GA--------EIERLAKGATGVKRTTGQHPAGILIVPDYMDIYDFSPIQYPA--DDQTAA 1071

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGT 617
            +     +   +   + L +  L     ++    Q    +D   IP DD     + +    
Sbjct: 1072 WETTHFDFHSIH-DNILKMDILGHDDPTMIRKLQDLSGIDPQTIPTDDPGVMKIFSGPEV 1130

Query: 618  LGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
            LG+   Q++S      +       +  ++       P     ++  +   +G +  +   
Sbjct: 1131 LGVTEEQIKSKTGTLGIPEFGTRFVRGMLEET---HPTTYSELLQISGLSHGTDVWLGNA 1187

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
              +      T   +I     + +  +  G     +  +  ++ K          E +   
Sbjct: 1188 EELIKAGTITLKDVIGCRDNIMMDLIHYGLDSQSSFKIMESVRKGK-----GIPEGYEEK 1242

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                 +      +  ++      Y F ++HA+AY +++ + A+ K +YP+ + AA  T+ 
Sbjct: 1243 MRAANVPDWYIESCGKI-----KYMFPRAHASAYVLMALRIAYFKVYYPLVYYAAYFTVR 1297

Query: 796  MDNVEKIKK---------------------------------FCQDARQFNIQIMPPSVN 822
             D+ + +                                      +  +         + 
Sbjct: 1298 ADDFDIVAMSRGKESLKNRMQEINDKGNEASAKEKNLLTVLELANEMVERGFNFKMIDLE 1357

Query: 823  TPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                + + +  + +     A+ G+G   A+ I+ A ADKPF S ED   R
Sbjct: 1358 KSDAEEWLIDGDSLIAPFNALPGLGLNVAKQIVAARADKPFLSKEDLAKR 1407



 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++   S+++ + + A    PAIA+TD   L +  E       +G++P+ 
Sbjct: 334 VELHLHTNMSTMDATNSISDFVSQAAKWGHPAIAVTDHAGLQAFPEAYAAGKKSGVKPLF 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           ++ 
Sbjct: 394 GVEANLVDDGVPIAYNSAHRALKGGKYVIF 423


>gi|270290316|ref|ZP_06196541.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4]
 gi|270281097|gb|EFA26930.1| DNA polymerase III, alpha subunit [Pediococcus acidilactici 7_4]
          Length = 1436

 Score =  206 bits (524), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 145/890 (16%), Positives = 276/890 (31%), Gaps = 164/890 (18%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            ++   Q N  MT             VL+  T  G + L +LVS   +     +  RI  S
Sbjct: 589  IEYHDQLNDHMTENDAYKHARPNHAVLIAKTQAGLKNLFKLVSLSNVK-YFYRVPRIPRS 647

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD- 193
             L+ +  EG+I+ +  SSG +  A        A  R   +        Y+ +     Y  
Sbjct: 648  ELERL-REGIIVGSACSSGEVFTAMAQKGYVEARDRAKFYD-------YLEVMPKPVYQP 699

Query: 194  -------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                               +V+L    ++P+VAT +  +L+ +D     +L+        
Sbjct: 700  LIDQEIVSDTNKLEEIIGNIVKLGKDLDIPVVATGDVHYLNPQDAIYRKILINSQGGANP 759

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
              +            +       F     A +  VE   + +  +   +P+  +    + 
Sbjct: 760  LNRT-ELPDVHFRTTDEMLEAFRFLGEETAHQIVVENPNQIADSIDDISPVKDKLYTPKM 818

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                     E R K +A  +     G        +   +RLD EL  I    FS  +LI 
Sbjct: 819  PGA------EDRIKQLAMDQAHALYG----KELPEIVSERLDKELTSIIGNGFSVIYLIA 868

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               +  + K+   VG  RGS   S  A    IT+++PL                      
Sbjct: 869  QRLVHKSNKDGYLVG-SRGSVGSSFVATMSGITEVNPLPPHYRCPNCQYSHFYTKGEYGS 927

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  D +     Y+Q  +G
Sbjct: 928  GYDLPDKKCPECGTLMIGDGQDIPFETFLGFKGDKVPDIDLNFSGDYQPIAHNYMQVLFG 987

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
               V +  T G++  K A   V                                 +   R
Sbjct: 988  KNNVFRAGTIGTVADKTAYGYV--------------------------KAYERDTNQHLR 1021

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG--DRPLSQLVPMYRDVRSDLPVTQ 557
             A         +  +++   G+ R    H AGI+I      +    P+      D     
Sbjct: 1022 GA--------EIERLAKGATGVKRTTGQHPAGILIVPDYMDIYDFSPIQYPA--DDQTAA 1071

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGT 617
            +     +   +   + L +  L     ++    Q    +D   IP DD     + +    
Sbjct: 1072 WETTHFDFHSIH-DNILKMDILGHDDPTMIRKLQDLSGIDPQTIPTDDPGVMKIFSGPEV 1130

Query: 618  LGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
            LG+   Q++S      +       +  ++       P     ++  +   +G +  +   
Sbjct: 1131 LGVTEEQIKSKTGTLGIPEFGTRFVRGMLEET---HPTTYSELLQISGLSHGTDVWLGNA 1187

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
              +      T   +I     + +  +  G     +  +  ++ K          E +   
Sbjct: 1188 EELIKAGTITLKDVIGCRDNIMMDLIHYGLDSQSSFKIMESVRKGK-----GIPEGYEEK 1242

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                 +      +  ++      Y F ++HA+AY +++ + A+ K +YP+ + AA  T+ 
Sbjct: 1243 MRAANVPDWYIESCGKI-----KYMFPRAHASAYVLMALRIAYFKVYYPLVYYAAYFTVR 1297

Query: 796  MDNVEKIKK---------------------------------FCQDARQFNIQIMPPSVN 822
             D+ + +                                      +  +         + 
Sbjct: 1298 ADDFDIVAMSRGKESLKNRMQEINDKGNEASAKEKNLLTVLELANEMVERGFNFKMIDLE 1357

Query: 823  TPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                + + +  + +     A+ G+G   A+ I+ A ADKPF S ED   R
Sbjct: 1358 KSDAEEWLIDGDSLIAPFNALPGLGLNVAKQIVAARADKPFLSKEDLAKR 1407



 Score = 92.2 bits (227), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++   S+++ + + A    PAIA+TD   L +  E       +G++P+ 
Sbjct: 334 VELHLHTNMSTMDATNSISDFVSQAAKWGHPAIAVTDHAGLQAFPEAYAAGKKSGVKPLF 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           ++ 
Sbjct: 394 GVEANLVDDGVPIAYNSAHRTLKGGKYVIF 423


>gi|259046785|ref|ZP_05737186.1| Gram-positive family DNA polymerase III, alpha chain [Granulicatella
            adiacens ATCC 49175]
 gi|259036553|gb|EEW37808.1| Gram-positive family DNA polymerase III, alpha chain [Granulicatella
            adiacens ATCC 49175]
          Length = 1444

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 141/908 (15%), Positives = 290/908 (31%), Gaps = 182/908 (20%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            QL    + N  +  +            +      G + L ++VS+  +     +  RI  
Sbjct: 595  QLLYHDELNTNIHPEEVFKNGRPFHATIFAKDQAGLKELFKVVSQSNIQ-YYYRVPRILR 653

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NL 186
            S L     +  ++ +G S G +  A        A+++   +   ++    +Y       L
Sbjct: 654  SMLSSR-RDSFLLGSGCSEGEVFEAMMQKGYNEAKEKAKFYDYIEIMPKAIYRPLIKKEL 712

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDR 245
             R+  +       +V+L      P+VAT N  +L+ ED    ++L+ +V +       D 
Sbjct: 713  IRNEHHLEEIIQNLVRLGDELGKPVVATGNVHYLNPEDKIYREILLTSVNNGVPQEYPDA 772

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
               T D  LK  + +         A E  V  +   S  L+   P+       + +    
Sbjct: 773  HLRTTDEMLKEFAFLGEEK-----AYEVVVTNSNWVSEQLEEITPVKDDLYTPKIEG--- 824

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              E+E+   +                   +    R+  EL  I    FS  +LI    + 
Sbjct: 825  -AEDEITKLSYDKAHEWYGNPL------PKIVDDRIKKELKSIIGNGFSVIYLIAQKLVL 877

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------------- 399
             + ++   VG  RGS   S+ A    IT+++PL                           
Sbjct: 878  KSNQDGYLVG-SRGSVGSSLVATLTGITEVNPLAPHYRCPQCQLSEFFDDGSVGSGFDLP 936

Query: 400  ---------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
                             + FE FL      +PD D++F  + + +   Y +  +G + V 
Sbjct: 937  EKNCPRCNTRMVKDGHDIPFETFLGFYGDKVPDIDLNFSGEYQPQAHNYTKVLFGEDYVY 996

Query: 445  QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLA 504
            +  T  ++  K A   V +  +       R  +                           
Sbjct: 997  RAGTISTVADKTAFGYV-KGYERDLGLEFRQAE--------------------------- 1028

Query: 505  DPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS---DLPVTQFN 559
                  +  ++    G+ R    H  GI  +     +    P+         +   T F+
Sbjct: 1029 ------IERLANGCTGVKRSTGQHPGGIIVIPDYMDVYDFTPIQYPADDLSAEWRTTHFD 1082

Query: 560  MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY---------- 609
               I    ++K D LG    T+++   D          +     +  + +          
Sbjct: 1083 FHSIHD-NVLKLDILGHDDPTVIRMLQDLSG--MDPKSIPPDDPEVMKIFGGTEVLGVTP 1139

Query: 610  -HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK 668
              + +  GTLGI +  +  +R  LE  +P+   +++ +  L     +         +   
Sbjct: 1140 EQIDSNTGTLGIPEFGTKFVRGMLEQTKPNTFTELLQISGLSHGTDVYLGNAEELIRLHN 1199

Query: 669  EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
                     +  ++     +++Y         +  G     A  +   + K      D  
Sbjct: 1200 IP-------LSEVIGCRDDIMVYL--------IHKGVEEGVAFKIMEGVRKGKGIPDD-- 1242

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
               F +   +N + +    +  ++      Y F K+HAAAY +++ + AW K H P+ + 
Sbjct: 1243 ---FQAIMRENNVPEWYIQSCLKI-----KYMFPKAHAAAYVLMALRVAWFKVHKPLLYY 1294

Query: 789  AASMTLEMDNVEKIKK---------------------------------FCQDARQFNIQ 815
             A  ++   + + +                                      +  +    
Sbjct: 1295 CAYFSVRAQDFDIVAMSQGKEMIKKRIKEIREKGMEASAKEQNLLTVLELANEMVERGFH 1354

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 V+     +F +  + +     AI+G+G   A  I+EA  ++PF S +D  +R   
Sbjct: 1355 FKMVDVDKSEASNFVIEGDSLIAPFRAIQGLGLNVANKIVEARQEQPFLSKKDLATR--- 1411

Query: 875  KKLNRRVL 882
             K+++ ++
Sbjct: 1412 GKVSKTLI 1419



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 38/90 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S+++   S ++++ + A     AIAITD  NL +  E        GI+ + 
Sbjct: 341 VELHMHTNMSVMDATNSPSDLISQAAKWGHKAIAITDHANLQAYPEAHGAGKKNGIKILY 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N           +V 
Sbjct: 401 GLEGNIVDDHVNVAYNPQHILLEDATYVVF 430


>gi|313633403|gb|EFS00239.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            seeligeri FSL N1-067]
          Length = 1452

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 150/919 (16%), Positives = 283/919 (30%), Gaps = 177/919 (19%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +D     N  M               +   TA G + L +L++   + +   +  RI  
Sbjct: 604  DIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYFYRVPRIPR 662

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NL 186
            S L ++  EGLI+ T  S G +  A      Q AEK    +   ++    +Y       L
Sbjct: 663  SQLNKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVADFYDFIEIQPKPVYAPLIEREL 721

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R           +V++      P+VAT N  +      + +  ++  +           
Sbjct: 722  VRDEKALEEILKNIVRVGEKAGKPVVATGNVHYKDP-VDKIYRKILIHSQGGANPLNRAE 780

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                     +       F    +A E  V  +      ++   PI       + D     
Sbjct: 781  LPDVHFRSTDEMLKEFAFLGEEKAKEVVVTNSNLVVDWIEDLKPIKDELYTPKIDG---- 836

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+E+RN + +       +         +    RL+ EL  I    F+  +LI    ++ 
Sbjct: 837  AEDEVRNMSYSMAHQLYGE------TLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKK 890

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            +  +   VG  RGS   S  A    IT+++PL                            
Sbjct: 891  SLLDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKHSEFFDDGSIGSGFDLPD 949

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL      +PD D++F  D +     Y +  +G + V +
Sbjct: 950  KDCPHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFR 1009

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V               +    +    +    I             
Sbjct: 1010 AGTIGTVAEKTAFGYV---------------RNYEREMNMTIRGAEIDR----------- 1043

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVR---SDLPVTQFNM 560
                    +     G+ R    H  GI+       +    P+        S+   T F+ 
Sbjct: 1044 --------LVAGCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATDSEWKTTHFDF 1095

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY----------- 609
              I    ++K D LG    T ++   D          +     D  + +           
Sbjct: 1096 HSIHD-NVLKLDILGHDDPTAIRMLQDLSG--IDPKTIPTDDPDVMKLFGSTESLGVKPA 1152

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             + +  GTLGI +  +  +RQ LE  +P    +++ +  L                N +E
Sbjct: 1153 DIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG-------TDVWLGNAEE 1205

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I +    +  ++     ++++         +  G   S A  +  ++ K      + ++
Sbjct: 1206 LIKNKTCELPEVIGCRDDIMVFL--------IYQGLESSLAFKIMESVRKGKGLTEEMEE 1257

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
                +               +    K   Y F K+HAAAY +++ + A+ K H+P+ F A
Sbjct: 1258 AMMANK----------VPLWYIESCKKIKYMFPKAHAAAYVLMAVRIAYFKVHHPLFFYA 1307

Query: 790  ASMTLEMDNVEKIKK---------------------------------FCQDARQFNIQI 816
               T+  D+ +                                        +        
Sbjct: 1308 TYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHF 1367

Query: 817  MPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +     D F +  + +     AI  +GT  A+ I+ A  +  F S ED   R    
Sbjct: 1368 QKVDLYKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQR---G 1424

Query: 876  KLNRRVLESLVFAGALDCF 894
            K+++ +++ +   G L+  
Sbjct: 1425 KVSKTIIQYMDDQGCLEGL 1443



 Score = 81.8 bits (200), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 350 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 409

Query: 72  GCQLDIDMQD 81
           G + ++    
Sbjct: 410 GIEANLIDDG 419


>gi|325660790|ref|ZP_08149418.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325472864|gb|EGC76074.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 1492

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 148/934 (15%), Positives = 300/934 (32%), Gaps = 166/934 (17%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F +     G+         +   +     N            ++L     G   L  L
Sbjct: 619  VKFIEMLKERGMT-------TLKEVNAFGDMNPDAIKKMPTYHAIILAKNEVGRVNLYTL 671

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  +L     +  RI  S   +   EGLI+ +   +G + RA     S+    +++ + 
Sbjct: 672  VSLSHLK-YFSRRPRIPKSEFNKY-REGLILGSACEAGELYRALLDGKSEETIAKIVDYY 729

Query: 176  KLF-----GDRLYV---NLQRHRGYDRYR---ESQVVQLAYTHELPLVATNNSLFLSEED 224
                    G+  ++     QR+   +        ++VQL    + P+VAT +  F+  + 
Sbjct: 730  DYLEIQPIGNNAFMIASEKQRNIKSEEDLKNMNRRIVQLGEKFQKPVVATCDVHFMDPDS 789

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
             E +  ++        +    P                             E+    +  
Sbjct: 790  -EVYRRIIMTGKGFSDADSQPPLYLRTTEEMLEEFSYLGSK-------KAEEVVITNTNK 841

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            +      +      +C  + ++ +  LRN           +         +   +RL+ E
Sbjct: 842  IADSIERISPVRPDKCPPVIEDSDQTLRNICYDKAHSMYGE------ELPEIVVERLERE 895

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----- 399
            LN I    F+  ++I    +  + ++   VG  RGS   S  A    IT+++PL      
Sbjct: 896  LNSIISNGFAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFVATMAGITEVNPLSPHYYC 954

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                    F + FE FL       PD D
Sbjct: 955  TNCHYSDFESEEVRAFAGGCGWDMPDKVCPNCGQPLVKDGFDIPFETFLGFKGNKEPDID 1014

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +    +Y +  +G  +  +  T G+L  K A   V    +   S+  +     
Sbjct: 1015 LNFSGDYQSNAHKYTEVIFGEGQTYRAGTIGTLAEKTAFGFVKNYYEEHGSRKRK----- 1069

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDR 537
                                           +  I +   G+ R    H  GI+      
Sbjct: 1070 -----------------------------CEIERIVEGCTGIRRSTGQHPGGIIVLPHGE 1100

Query: 538  PLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
             ++   P+           +T           L+K D LG    T+++   + + Q  G 
Sbjct: 1101 NINSFTPVQHPANDMTTDIITTHFDYHSIDHNLLKLDILGHDDPTMIKMLEELVEQLTGK 1160

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                + IP DD     L    G+LGI   +  G      G+     + +I +V   +P  
Sbjct: 1161 PFKATEIPLDDPGVMQLFADTGSLGIKPSDIGGCPVGCLGIPEFGTDFVIQMVVDTKPKT 1220

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +++  +   +G +  ++    +    K T    I     +    + +G     +  + 
Sbjct: 1221 LSDLIRISGLSHGTDVWLNNAQTLIQEGKATISTAICTRDDIMTYLINTGMESELSFTIM 1280

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
             ++ K    + +     +       G+      +  ++      Y F K+HAAAY +++Y
Sbjct: 1281 ESVRKGKGLKPE-----WEDAMKAAGVPDWYIWSCKKI-----KYMFPKAHAAAYVMMAY 1330

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEK--------------------------------- 801
            + A+ K +YP+ + AA  ++                                        
Sbjct: 1331 RIAYCKVNYPLAYYAAYFSIRASAFSYELMCQGKEKLEFYLRDYKNRSDSLSKKDQDTLK 1390

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
              +  Q+      + +P  +       F++ D ++   L++I+G+G   A  +  A+ D 
Sbjct: 1391 DMRIVQEMYARGYEFLPLDIYRAKATKFQIIDGKLMPPLSSIEGMGDKAAEAVEMAAEDG 1450

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            P+ S +DF  R    K+++ V++ +   G     
Sbjct: 1451 PYLSRDDFRQRT---KVSKTVIDFMADLGMFGDL 1481



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 4/90 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--SQKA--CAAGI 67
           V L  H+  S ++G      ++ +       AIAITD   + +  +     +        
Sbjct: 374 VELHCHTKMSDMDGVSEAQALVARAHDWGHQAIAITDHGVVQAFPDANHYVERLDKEDPF 433

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           + I G +  +         N+         
Sbjct: 434 KIIYGVEAYLVDDLTEIAVNEQGQTLDDTF 463


>gi|241895743|ref|ZP_04783039.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313]
 gi|241870786|gb|EER74537.1| DNA polymerase III PolC [Weissella paramesenteroides ATCC 33313]
          Length = 1437

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 143/922 (15%), Positives = 292/922 (31%), Gaps = 182/922 (19%)

Query: 58   FSQKACA-AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F ++A    GI            Q N  MT+            V+LV    G + L +L+
Sbjct: 580  FLEEARESYGI--------THADQLNDHMTDNDAWRHGRPNHAVVLVQNQTGVKNLYKLI 631

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S   +     ++ R+  S L +   +GL++ TG SSG    A        A+ +   +  
Sbjct: 632  SESNIH-YLYRTPRVPRSVLNKY-RDGLLLGTGDSSGEFWEALMQKGYAAAKTKAKYYD- 688

Query: 177  LFGDRLYVNLQR----------HRGYDRYRESQV----VQLAYTHELPLVATNNSLFLSE 222
                  Y+ +Q               D  R  ++    V++      P+V T +  +L+ 
Sbjct: 689  ------YIEIQPSANYLPQIEGELIKDEARLRELMMQAVKIGDELNKPVVVTGDVHYLNP 742

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
            ED     +L++                              +     A +  ++     +
Sbjct: 743  EDGIYRKILISSQGGA-NPLNRHSLPDLHFRTTQEVLDDFSWMKPELAKKLVIDNTHVVA 801

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
             ++     I                 +E+R K+                   +    R++
Sbjct: 802  DMIDDVEAIKSGNYPPNMP----TANDEIRQKSYETAYRMYGNPL------PEIVEARIE 851

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--- 399
             ELN I +  F+  +L+    +  + K+   VG  RGS   S+ A  + IT+++ L    
Sbjct: 852  QELNSIIKNGFAVIYLVAQRLVAKSNKDGYLVG-SRGSVGSSLIALLIGITEVNALPPHY 910

Query: 400  --------------------------------------FSLLFERFLNPDRMSMPDFDID 421
                                                   ++ FE FL      +PD D++
Sbjct: 911  RSVAGDYVEFVNPRDYESGYDLPERYSPIDGSKLIGDGHNIPFETFLGFKGNKVPDIDLN 970

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  D +     Y+++ +G   V +  T  ++  K A   V +A +  + Q  R  +    
Sbjct: 971  FSGDYQPFAHNYMKSLFGENNVFRAGTIATVADKTAFGYV-KAYERDHDQQFRGAE---- 1025

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--L 539
                                         +  ++    G+ R    H AGI+I      +
Sbjct: 1026 -----------------------------VERLAMGATGVKRTTGQHPAGILIVPDDMEI 1056

Query: 540  SQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
                P+             T F+   I    ++K D LG    T+++       Q    +
Sbjct: 1057 YDFTPIQYPADDLSATWRTTHFDFHSIHD-NILKMDILGHDDPTMIR-----ALQDMSGI 1110

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            D + IP +D     L ++   LG+   Q+ S      +       +  ++       P  
Sbjct: 1111 DPTTIPMNDPGVMSLFSSPEALGVTEDQIFSKTGTLGVPEFGTAFVRGMLEET---HPKN 1167

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
               ++  +   +G +        +      T G +I     +    +  G +   +  + 
Sbjct: 1168 YSELLQISGLSHGTDVWRGNADELIERGVATIGTVIGTRDKIMTDLINYGVNPESSFQIM 1227

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
              + K      +     + +     G+ +    +  ++      Y F ++HAAAY +++ 
Sbjct: 1228 EKVRKGKGIVDE-----YQAEMRAAGVPEWYIESGLKI-----KYMFPRAHAAAYVLMAL 1277

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKK------------------------------ 804
            + A+ K ++P  + AA  ++   N + +                                
Sbjct: 1278 RIAYFKVYFPTLYYAAYFSVRASNFDIVSMSRGLNSTKAKIMEIKHQGNDASAKDKDLLT 1337

Query: 805  ---FCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
                  +A +  I      +     D + +  + +     ++ G+G   A+ I+ A A+ 
Sbjct: 1338 VLEIANEALERGITFSMVDLYKSDSDEWLIDGDTLIAPFNSVPGLGDNVAKRIVAARAEG 1397

Query: 861  PFDSLEDFCSRVDSKKLNRRVL 882
             F S ED   R     +++ +L
Sbjct: 1398 EFLSKEDLAQR---GGISKTLL 1416



 Score = 79.4 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS  S ++    + + + + +     AIAITDT       E +  A A  ++ I 
Sbjct: 335 VELHAHSLMSTMDATNGIKDYVKQASDWGMDAIAITDTAGAQGFPEAASSAAANDVKMIY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G ++++       + N           +V 
Sbjct: 395 GVEVNLVEDGEPIIFNPAHVELADAEYVVF 424


>gi|148269599|ref|YP_001244059.1| DNA polymerase III, alpha subunit [Thermotoga petrophila RKU-1]
 gi|147735143|gb|ABQ46483.1| DNA polymerase III, alpha subunit [Thermotoga petrophila RKU-1]
          Length = 842

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 192/681 (28%), Positives = 306/681 (44%), Gaps = 85/681 (12%)

Query: 285 LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA-QDYRQRLDF 343
           L       P   E   D +  E  +   N           +  I K     ++Y  RL  
Sbjct: 124 LDEDVQGFPEKCEDAVDTLNAEAYDLRVNHRFPTPPEDWDESLIEKAESLGEEYVSRLKR 183

Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
           EL VI R  F+ Y   V   ++ A+K  I VGPGRGS  GS+ A+   IT+IDP+++ LL
Sbjct: 184 ELEVIKRKGFTPYIYTVEKVVEIARKLGIKVGPGRGSAVGSLVAHLCGITEIDPIKYDLL 243

Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
           FERFLN +R   PD D+D    RR ++I+ +   +   +V Q+ TFG+L  K+    +  
Sbjct: 244 FERFLNEERQEPPDIDVDVEDRRRKDLIKELSKSF---QVYQVSTFGNLTEKSLKNLI-- 298

Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
                                  +   ++ + +   +     P                 
Sbjct: 299 --------------------NSVLPDASLEEKNEIYKIVYGLPHH--------------- 323

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
             S HAAGIVI + PL    P+      D+P+T ++M  +++ G++K D LGLKTL+ ++
Sbjct: 324 -PSVHAAGIVISENPL----PLPTREEEDIPITDYDMYDLQEIGVVKIDILGLKTLSFIK 378

Query: 584 KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
                           +  + D +TYHL++   TLG+FQLE    R+    + P  ++++
Sbjct: 379 DFKK-----------EIFDYSDEKTYHLISKGKTLGVFQLEGLQARKLCRRISPRNMDEL 427

Query: 644 IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
             L++L RPGP+ + +                        ET+GV+IYQEQ+M++A + +
Sbjct: 428 SILLALNRPGPLRSGLDVMFSNPKNVPEFF-----RKTFPETRGVLIYQEQIMRLA-MFA 481

Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
           G S +EAD+LRRA+ KK +E+M+   E+   G  + G+    A  I E+L  F+ Y FNK
Sbjct: 482 GLSGTEADILRRAIAKKEREKMEPLLEKMKKGLLEKGM--ENAEQILEILLNFSSYAFNK 539

Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
           SH+ AYA I+YQTA++K H+  EF          + EKI    Q+ R    ++ PP +NT
Sbjct: 540 SHSVAYAHITYQTAYLKVHHLEEFFKLYFAYNSSDTEKIFLAVQELRSEGYRVHPPDINT 599

Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
              +       +Y  L  +KGVG T    I +     P +S+ +   RV    + R V+E
Sbjct: 600 SGKELVFHGKDVYLPLTVVKGVGATLVEQIEKIR---PINSVRELQERV--TGVPRNVVE 654

Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
           SL+ AG  D    +R   L+ L+   +      +       ++F  +    S  I +   
Sbjct: 655 SLITAGVFDKLYENRKLALEELNKKVEKDILEIR-------SLFGEKVEQESSNIKIGDI 707

Query: 944 SVENSSVRFENEQRVLGFYFS 964
           +              +GF  +
Sbjct: 708 TELEEK--------SMGFPLT 720



 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 16 VHSSYSLLEG-ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          V S YS  +G  +    +   + +    ++ + D  N  +A++F+      G+ P+ G
Sbjct: 5  VISPYSF-DGSVVRFEKLALLLKSKGLKSVILADR-NFHAAVKFNTIMRKHGLIPVHG 60


>gi|281411683|ref|YP_003345762.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
 gi|281372786|gb|ADA66348.1| DNA polymerase III, alpha subunit [Thermotoga naphthophila RKU-10]
          Length = 842

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 192/681 (28%), Positives = 305/681 (44%), Gaps = 85/681 (12%)

Query: 285 LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA-QDYRQRLDF 343
           L       P   E   D +  E  +   N           +  I K     ++Y  RL  
Sbjct: 124 LDEDVQGFPEKCEDAVDTLNAEAYDLRVNHRFPTPPEDWDESLIEKAESLGEEYVSRLKR 183

Query: 344 ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLL 403
           EL VI R  F+ Y   V   +  A+K  I VGPGRGS  GS+ A+   IT+IDP+++ LL
Sbjct: 184 ELEVIKRKGFTPYIYTVGKVVDIARKLGIKVGPGRGSAVGSLVAHLCGITEIDPIKYDLL 243

Query: 404 FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
           FERFLN +R   PD D+D    RR ++I+ +   +   +V Q+ TFG+L  K+    +  
Sbjct: 244 FERFLNEERQEPPDIDVDVEDRRRKDLIKELSKSF---QVYQVSTFGNLTEKSLKNLI-- 298

Query: 464 ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
                                  +   ++ + +   +     P                 
Sbjct: 299 --------------------NSVLPDASLEEKNEIYKIVYGLPHH--------------- 323

Query: 524 HASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
             S HAAGIVI + PL    P+      D+P+T ++M  +++ G++K D LGLKTL+ ++
Sbjct: 324 -PSVHAAGIVISENPL----PLPTREEEDIPITDYDMYDLQEIGVVKIDILGLKTLSFIK 378

Query: 584 KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
                           +  + D +TYHL++   TLG+FQLE    R+    + P  ++++
Sbjct: 379 DFKK-----------EIFDYSDEKTYHLISKGKTLGVFQLEGLQARKLCRRISPRNMDEL 427

Query: 644 IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
             L++L RPGP+ + +                        ET+GV+IYQEQ+M++A + +
Sbjct: 428 SILLALNRPGPLRSGLDVMFSNPKNVPEFF-----RKTFPETRGVLIYQEQIMRLA-MFA 481

Query: 704 GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
           G S +EAD+LRRA+ KK +E+M+   E+   G  + G+    A  I E+L  F+ Y FNK
Sbjct: 482 GLSGTEADILRRAIAKKEREKMEPLLEKMKKGLLEKGM--ENAEQILEILLNFSSYAFNK 539

Query: 764 SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNT 823
           SH+ AYA I+YQTA++K H+  EF          + EKI    Q+ R    ++ PP +NT
Sbjct: 540 SHSVAYAHITYQTAYLKVHHLEEFFKLYFAYNSSDTEKIFLAVQELRSEGYRVHPPDINT 599

Query: 824 PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
              +       +Y  L  +KGVG T    I +     P +S+ +   RV    + R V+E
Sbjct: 600 SGKELVFHGKDVYLPLTVVKGVGATLVEQIEKIR---PINSVRELQERV--TGVPRNVVE 654

Query: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943
           SL+ AG  D    +R   L+ L+   +      +       ++F  +    S  I +   
Sbjct: 655 SLITAGVFDKLYENRKLALEELNKKVEKDILEIR-------SLFGEKVEQESSNIKIGDI 707

Query: 944 SVENSSVRFENEQRVLGFYFS 964
           +              +GF  +
Sbjct: 708 TELEEK--------SMGFPLT 720


>gi|160880751|ref|YP_001559719.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans ISDg]
 gi|160429417|gb|ABX42980.1| DNA polymerase III, alpha subunit [Clostridium phytofermentans ISDg]
          Length = 1527

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 148/926 (15%), Positives = 289/926 (31%), Gaps = 184/926 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            L+F +     GI+        +   +  +               ++L     G   L  +
Sbjct: 653  LKFLEMLRERGIE-------TLAQINRAEEVTPDVIKKMPTYHAIILCQNDIGRVNLYRM 705

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  ++ +  ++  RI  S L +   EGL++ +   +G + +A   NSS+    RL  F 
Sbjct: 706  VSYSHI-NYFQRRPRIPKSVLMK-HREGLLIGSACEAGELYQAILRNSSEGEIVRLANFY 763

Query: 176  KLFGDRLYVNLQRHRGYD----------------RYRESQVVQLAYTHELPLVATNNSLF 219
                   Y  +Q                      +    +++ L   +  P+VAT +  F
Sbjct: 764  D------YYEIQPLGNNQFMIESEKIDISSEEELKEINRKIIALGEEYNKPVVATCDVHF 817

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            L+ ED E +  ++  A     +    P                      +A E  +    
Sbjct: 818  LNPED-EVYRRIIMAAKGFSDADNQAPLYFRTTEEMLEEFSYLGKE---KAEEVVITNTN 873

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
            +   +++  +P+ P       +D  K     LR+                     +    
Sbjct: 874  KVCDMIEKISPVRPDKCAPVIEDSDKT----LRDICYEKAHSMYGPDL------PKIVAD 923

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RL+ EL  I    F+  ++I    +  + ++   VG  RGS   S  A    IT+++PL 
Sbjct: 924  RLEHELKSIINNGFAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFAATMSGITEVNPLP 982

Query: 400  ---------------------------------------------FSLLFERFLNPDRMS 414
                                                          ++ FE FL  +   
Sbjct: 983  AHYYCPNCHFSDFESEEVKAFGSSSGCDMPDRDCPVCGQPLAKDGHNIPFETFLGFNGDK 1042

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D++F  + + +   Y +  +G  +  +  T G+L  K A     +  +        
Sbjct: 1043 EPDIDLNFSGEYQSKAHDYTEVIFGKGQTFRAGTIGTLADKTAFGYAKKYYE-------- 1094

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
                                       +     V  +  I +   G+ R    H  GI++
Sbjct: 1095 --------------------------EKSVHKRVAEINRIVEGCVGVRRTTGQHPGGIIV 1128

Query: 535  GD--RPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                  +    P+ R         VT           L+K D LG    T+++     + 
Sbjct: 1129 LPLGEEIYSFTPVQRPANDMTTKTVTTHFDYHSIDHNLLKLDILGHDDPTMIR-----ML 1183

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            +    +D   I  DD +   L  +  +LGI   +  G      G+     + ++ ++   
Sbjct: 1184 EDLTGIDAKTIRMDDQKVISLFKSTESLGIRPEDIGGCDLGSLGLPELGTDFVMQMLRDT 1243

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            +P    +++  +   +G +  ++    +    K T    I     +    +  G     A
Sbjct: 1244 KPQSFSDMIRISGLSHGTDVWLNNTQTLISEGKCTLSTAICTRDDIMTYLISEGVENGLA 1303

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
              +  ++ K      +            NG+      +   +      Y F K+HA AY 
Sbjct: 1304 FKIMESVRKGKGLTPE-----MEEAMVANGVPDWYIWSCKRI-----KYMFPKAHACAYV 1353

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEK----------------------------- 801
            +++++ A+ K +YP+ +  A  ++                                    
Sbjct: 1354 MMAFRIAYFKVYYPLAYYTAYFSIRATAFNYELMCLGRERLDYHMAEYKRRMGSNDPAQK 1413

Query: 802  ----------IKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGVGTTTA 850
                        K  Q+        +P  V T     F++ D ++  +L+ I G+G   A
Sbjct: 1414 LTKKEEDTLKDMKVVQEMYARGFDFLPIDVYTAKAHHFQIIDGKLMPALSTIDGLGDKAA 1473

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKK 876
              ++EA  D  F S +DF +R     
Sbjct: 1474 DQVVEAVKDGKFLSRDDFKTRCKISG 1499



 Score = 72.1 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 28/99 (28%), Gaps = 13/99 (13%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA--------- 62
           V L  H+  S ++  +    ++         A+AITD   + +  E S            
Sbjct: 399 VELHAHTMMSDMDAVVDPQALVKTAFEWGHKAVAITDHGVVQAFPEASHAINPKDYKDDE 458

Query: 63  ----CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
                A   + I G +  +       +  +         
Sbjct: 459 EKMQRAKDFKIIYGMEAYVVDDMKDIVQGECGQGIEDTC 497


>gi|331085480|ref|ZP_08334565.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330407718|gb|EGG87216.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 1492

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 148/934 (15%), Positives = 300/934 (32%), Gaps = 166/934 (17%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F +     G+         +   +     N            ++L     G   L  L
Sbjct: 619  VKFIEMLKERGMT-------TLKEVNAFGDMNPDAIKKMPTYHAIILAKNEVGRVNLYTL 671

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  +L     +  RI  S   +   EGLI+ +   +G + RA     S+    +++ + 
Sbjct: 672  VSLSHLK-YFARRPRIPKSEFNKY-REGLILGSACEAGELYRALLDGKSEETIAKIVDYY 729

Query: 176  KLF-----GDRLYV---NLQRHRGYDRYR---ESQVVQLAYTHELPLVATNNSLFLSEED 224
                    G+  ++     QR+   +        ++VQL    + P+VAT +  F+  + 
Sbjct: 730  DYLEIQPIGNNAFMIASEKQRNIKSEEDLKNMNRRIVQLGEKFQKPVVATCDVHFMDPDS 789

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
             E +  ++        +    P                             E+    +  
Sbjct: 790  -EVYRRIIMTGKGFSDADSQPPLYLRTTEEMLEEFSYLGSK-------KAEEVVITNTNK 841

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFE 344
            +      +      +C  + ++ +  LRN           +         +   +RL+ E
Sbjct: 842  IADSIERISPVRPDKCPPVIEDSDQTLRNICYDKAHSMYGE------ELPEIVVERLERE 895

Query: 345  LNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----- 399
            LN I    F+  ++I    +  + ++   VG  RGS   S  A    IT+++PL      
Sbjct: 896  LNSIISNGFAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFVATMAGITEVNPLSPHYYC 954

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                    F + FE FL       PD D
Sbjct: 955  TNCHYSDFESEEVRAFAGGCGWDMPDKVCPNCGQPLVKDGFDIPFETFLGFKGNKEPDID 1014

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +    +Y +  +G  +  +  T G+L  K A   V    +   S+  +     
Sbjct: 1015 LNFSGDYQSNAHKYTEVIFGEGQTYRAGTIGTLAEKTAFGFVKNYYEEHGSRKRK----- 1069

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDR 537
                                           +  I +   G+ R    H  GI+      
Sbjct: 1070 -----------------------------CEIERIVEGCTGIRRSTGQHPGGIIVLPHGE 1100

Query: 538  PLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGV 594
             ++   P+           +T           L+K D LG    T+++   + + Q  G 
Sbjct: 1101 NINSFTPVQHPANDMTTDIITTHFDYHSIDHNLLKLDILGHDDPTMIKMLEELVEQLTGK 1160

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                + IP DD     L    G+LGI   +  G      G+     + +I +V   +P  
Sbjct: 1161 PFKATEIPLDDPGVMQLFADTGSLGIKPSDIGGCPVGCLGIPEFGTDFVIQMVVDTKPKT 1220

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + +++  +   +G +  ++    +    K T    I     +    + +G     +  + 
Sbjct: 1221 LSDLIRISGLSHGTDVWLNNAQTLIQEGKATISTAICTRDDIMTYLINTGMESELSFTIM 1280

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
             ++ K    + +     +       G+      +  ++      Y F K+HAAAY +++Y
Sbjct: 1281 ESVRKGKGLKTE-----WEDAMKAAGVPDWYIWSCKKI-----KYMFPKAHAAAYVMMAY 1330

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEK--------------------------------- 801
            + A+ K +YP+ + AA  ++                                        
Sbjct: 1331 RIAYCKVNYPLAYYAAYFSIRASAFSYELMCQGKEKLEFYLRDYKNRSDSLSKKDQDTLK 1390

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
              +  Q+      + +P  +       F++ D ++   L++I+G+G   A  +  A+ D 
Sbjct: 1391 DMRIVQEMYARGYEFLPLDIYRAKATKFQIIDGKLMPPLSSIEGMGDKAAEAVEMAAEDG 1450

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            P+ S +DF  R    K+++ V++ +   G     
Sbjct: 1451 PYLSRDDFRQRT---KVSKTVIDFMADLGMFGDL 1481



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 4/90 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--SQKA--CAAGI 67
           V L  H+  S ++G      ++ +       AIAITD   + +  +     +        
Sbjct: 374 VELHCHTKMSDMDGVSEAQALVARAHDWGHQAIAITDHGVVQAFPDANHYVERLDKEDPF 433

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           + I G +  +         N+         
Sbjct: 434 KIIYGVEAYLVDDLTEIAVNEQGQTLDDTF 463


>gi|254974851|ref|ZP_05271323.1| DNA polymerase III PolC-type [Clostridium difficile QCD-66c26]
 gi|255313978|ref|ZP_05355561.1| DNA polymerase III PolC-type [Clostridium difficile QCD-76w55]
 gi|255516658|ref|ZP_05384334.1| DNA polymerase III PolC-type [Clostridium difficile QCD-97b34]
 gi|255649757|ref|ZP_05396659.1| DNA polymerase III PolC-type [Clostridium difficile QCD-37x79]
 gi|260682913|ref|YP_003214198.1| DNA polymerase III PolC-type [Clostridium difficile CD196]
 gi|260686511|ref|YP_003217644.1| DNA polymerase III PolC-type [Clostridium difficile R20291]
 gi|260209076|emb|CBA62219.1| DNA polymerase III PolC-type [Clostridium difficile CD196]
 gi|260212527|emb|CBE03476.1| DNA polymerase III PolC-type [Clostridium difficile R20291]
          Length = 1432

 Score =  205 bits (522), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 150/915 (16%), Positives = 304/915 (33%), Gaps = 203/915 (22%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             I L+   + G + L +++S  + ++   ++ RI  S L E   EGLI+ +   +G + +
Sbjct: 607  HITLIAKNSIGIKNLYKIISDAH-VNHFFRAPRILRSVLNEY-KEGLIIGSACEAGVVFQ 664

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--------------HRGYDRYRESQVVQL 203
            A   N S    K+++          Y+ +                     R    +++  
Sbjct: 665  AVKKNVSDEEMKKIIDLYD------YIEVMPIDNNRFMIDKGEVKDEEELRELNRKLIDT 718

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
            A   +   VAT +  FL + +     V +  +    V +++                   
Sbjct: 719  AKKFDKIPVATGDVHFLDKHEAVLRKV-LKYSQGFKVDEEETYLHFRTTDEMLEEFSYLG 777

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
                  A E  VE +   + +++   PI         +      + ELR       +   
Sbjct: 778  EE---LAYEVVVENSNLIADMVEDIKPIPDDTYPPIIEG----SDVELREMCYKKAKRIY 830

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                       +  ++RLD ELN I    ++  ++I    +  +  +   VG  RGS   
Sbjct: 831  GDP------IPEIVQKRLDRELNSIISNGYAVMYIIAQKLVAKSLSDGYLVG-SRGSVGS 883

Query: 384  SVTAYALTITDIDPLR-------------------------------------------F 400
            S  A    IT+++PL                                             
Sbjct: 884  SFAATMSDITEVNPLPAHYICENEDCKYSFFYEIGEWGSGVDLPDKDCPKCGRKLAKNGH 943

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL  +    PD D++F  + +  + +Y +  +G   V +  T G++  K A   
Sbjct: 944  DIPFEVFLGFEGDKEPDIDLNFSGNYQPTIHKYTEELFGEGYVYRAGTIGTVAEKTAFGY 1003

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
              + ++                                            +L +S    G
Sbjct: 1004 ARKYVE----------------------------------ENNISVPNAEVLRLSNGCTG 1029

Query: 521  LYRHASTHAAG--IVIGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLG 575
            + R +  H  G  ++   + +    P+          +  T F+   I    ++K D LG
Sbjct: 1030 VKRTSGQHPGGVMVIPDYKDVYDFTPIQYPANDTSCGVITTHFDYHSI-SGRILKLDILG 1088

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIF 621
                T+++     + +    ++++ IP DD ET  L T+                 L + 
Sbjct: 1089 HDGPTIIR-----MLEDMTGINITEIPLDDKETMSLFTSTEALGVTPEEINCPIGCLAVP 1143

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            +  +  +RQ L   +P    +++ +  L                N ++ +      +  +
Sbjct: 1144 EFGTKFVRQMLLDTKPTTFAELVRISGLSHG-------TDVWVNNAQDLVREDIVGLKDV 1196

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            +     ++ Y         +  G     +  +  ++ K    + +      I    KN +
Sbjct: 1197 ISTRDDIMNYL--------IFKGLPPKMSFTIMESVRKGKGLKPE-----HIEEMKKNNV 1243

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE- 800
             +    +  ++      Y F K+HA AY + S++ A+ K HYP  F A   T ++++ + 
Sbjct: 1244 PEWYIGSCKKI-----KYMFPKAHAVAYVMTSFRIAYCKVHYPEAFYATYFTTKVEDFDA 1298

Query: 801  --------------------------------KIKKFCQDARQFNIQIMPPSVNTPCV-D 827
                                             + +   +     I+++P  +      +
Sbjct: 1299 DLIVKGLDAIKSKINEIESLGNDATTKEKGMLTVLEVALEMYARGIKLLPVDIYKSDATE 1358

Query: 828  F-KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F  VG+  +   +AAI+G+G   A +I     +  F S ED   R    K+++ V+E+L 
Sbjct: 1359 FIVVGEKTLLPPMAAIQGLGGNAAINIQNERKNGEFISKEDLRKRT---KISKTVIETLT 1415

Query: 887  FAGALDCFGYSRMQL 901
              G+L+     R QL
Sbjct: 1416 NHGSLENMSE-RNQL 1429



 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 34/86 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++   S+  ++++ A     AIAITD   +    +      +  I+ + 
Sbjct: 333 VELHAHTQMSSMDAICSVKKLVERAAKWGHSAIAITDHGVVQGFPDAMNAGKSNNIKILY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +   D+L + +          
Sbjct: 393 GVEGYLVEDDSLIIEDANDKELSQTF 418


>gi|126698903|ref|YP_001087800.1| DNA polymerase III PolC-type [Clostridium difficile 630]
 gi|255100324|ref|ZP_05329301.1| DNA polymerase III PolC-type [Clostridium difficile QCD-63q42]
 gi|255306262|ref|ZP_05350434.1| DNA polymerase III PolC-type [Clostridium difficile ATCC 43255]
 gi|115250340|emb|CAJ68162.1| DNA polymerase III PolC-type (PolIII) [Clostridium difficile]
          Length = 1432

 Score =  205 bits (522), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 150/915 (16%), Positives = 304/915 (33%), Gaps = 203/915 (22%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             I L+   + G + L +++S  + ++   ++ RI  S L E   EGLI+ +   +G + +
Sbjct: 607  HITLIAKNSIGIKNLYKIISDAH-VNHFFRAPRILRSVLNEY-KEGLIIGSACEAGVVFQ 664

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--------------HRGYDRYRESQVVQL 203
            A   N S    K+++          Y+ +                     R    +++  
Sbjct: 665  AVKKNVSDEEMKKIIDLYD------YIEVMPIDNNRFMIDKGEVKDEEELRELNRKLIDT 718

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
            A   +   VAT +  FL + +     V +  +    V +++                   
Sbjct: 719  AKKFDKIPVATGDVHFLDKHEAVLRKV-LKYSQGFKVDEEETYLHFRTTDEMLEEFSYLG 777

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
                  A E  VE +   + +++   PI         +      + ELR       +   
Sbjct: 778  EE---LAYEVVVENSNLIADMVEDIKPIPDDTYPPIIEG----SDVELREMCYKKAKRIY 830

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                       +  ++RLD ELN I    ++  ++I    +  +  +   VG  RGS   
Sbjct: 831  GDP------IPEIVQKRLDRELNSIISNGYAVMYIIAQKLVAKSLSDGYLVG-SRGSVGS 883

Query: 384  SVTAYALTITDIDPLR-------------------------------------------F 400
            S  A    IT+++PL                                             
Sbjct: 884  SFAATMSDITEVNPLPAHYICENEDCKYSFFYEIGEWGSGVDLPDKDCPKCGRKLAKNGH 943

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL  +    PD D++F  + +  + +Y +  +G   V +  T G++  K A   
Sbjct: 944  DIPFEVFLGFEGDKEPDIDLNFSGNYQPTIHKYTEELFGEGYVYRAGTIGTVAEKTAFGY 1003

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
              + ++                                            +L +S    G
Sbjct: 1004 ARKYVE----------------------------------ENNISVPNAEVLRLSNGCTG 1029

Query: 521  LYRHASTHAAG--IVIGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLG 575
            + R +  H  G  ++   + +    P+          +  T F+   I    ++K D LG
Sbjct: 1030 VKRTSGQHPGGVMVIPDYKDVYDFTPIQYPANDTSCGVITTHFDYHSI-SGRILKLDILG 1088

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIF 621
                T+++     + +    ++++ IP DD ET  L T+                 L + 
Sbjct: 1089 HDGPTIIR-----MLEDMTGINITEIPLDDKETMSLFTSTEALGVTPEEINCPIGCLAVP 1143

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            +  +  +RQ L   +P    +++ +  L                N ++ +      +  +
Sbjct: 1144 EFGTKFVRQMLLDTKPTTFAELVRISGLSHG-------TDVWVNNAQDLVREDIVGLKDV 1196

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            +     ++ Y         +  G     +  +  ++ K    + +      I    KN +
Sbjct: 1197 ISTRDDIMNYL--------IFKGLPPKMSFTIMESVRKGKGLKPE-----HIEEMKKNNV 1243

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE- 800
             +    +  ++      Y F K+HA AY + S++ A+ K HYP  F A   T ++++ + 
Sbjct: 1244 PEWYIGSCKKI-----KYMFPKAHAVAYVMTSFRIAYCKVHYPEAFYATYFTTKVEDFDA 1298

Query: 801  --------------------------------KIKKFCQDARQFNIQIMPPSVNTPCV-D 827
                                             + +   +     I+++P  +      +
Sbjct: 1299 DLIVKGLDAIKSKINEIESLGNDATTKEKGMLTVLEVALEMYARGIKLLPVDIYKSDATE 1358

Query: 828  F-KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F  VG+  +   +AAI+G+G   A +I     +  F S ED   R    K+++ V+E+L 
Sbjct: 1359 FIVVGEKTLLPPMAAIQGLGGNAAINIQNERKNGEFISKEDLRKRT---KISKTVIETLT 1415

Query: 887  FAGALDCFGYSRMQL 901
              G+L+     R QL
Sbjct: 1416 NHGSLENMSE-RNQL 1429



 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 34/86 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++   S+  ++++ A     AIAITD   +    +      +  I+ + 
Sbjct: 333 VELHAHTQMSSMDAICSVKKLVERAAKWGHSAIAITDHGVVQGFPDAMNAGKSNNIKILY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +   D+L + +          
Sbjct: 393 GVEGYLVEDDSLIIEDANDKELSQTF 418


>gi|291519550|emb|CBK74771.1| DNA polymerase III catalytic subunit, PolC type [Butyrivibrio
            fibrisolvens 16/4]
          Length = 1480

 Score =  205 bits (522), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 156/971 (16%), Positives = 307/971 (31%), Gaps = 186/971 (19%)

Query: 23   LEGALSLNNILDKIAADQQPAIAITDTNNLFSALE-FSQKACAAGIQPIIGCQLDIDMQD 81
            L+    L N+++        A+A  D        E F  K  A  I         +   +
Sbjct: 575  LDAVCKLENVVN---EHHHRAVA--DAEVTAKIFEKFIVKLEAENIH-------TLTELN 622

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            +       +         ++L     G   L  LVS  +L     +  R+  S L E   
Sbjct: 623  DKAKPKAEQIKKMKAHHCIVLAKNDLGRINLYRLVSESHLK-YFSRYPRVPKSLLSEC-R 680

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-------- 193
            EGLI+ +   +G +  A   +       R+ +F        Y+ +Q     +        
Sbjct: 681  EGLIIGSACEAGELYDAIVDDRDDSEVARIASFYD------YLEIQPVGNNEFMIRSDKP 734

Query: 194  -----------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
                       +    ++V L      P+VAT +  FL  +D E +  ++        + 
Sbjct: 735  KYENFNSVKDLQDVNKKIVALGEEFNKPVVATCDVHFLDPQD-EIYRRIIMANKGFDDAD 793

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            +  P                  +   E +     +       +             +C  
Sbjct: 794  QQAPLYLHSTDEMLEEFSYLGLAKAHEVVIENTNMIADMCEYI-------HPVRPDKCPP 846

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            + +  E +LR                      +    RL+ ELN I    +S  ++I   
Sbjct: 847  VIEHSEEDLRRICETRAHEVYGPDL------PEIVSARLERELNSIIGNGYSVMYIIAQK 900

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------- 399
             +  + ++   VG  RGS   S  A    IT+++PL                        
Sbjct: 901  LVWKSNEDGYLVG-SRGSVGSSFAATMAGITEVNPLPPHYRCPNCFYVDFDGPEVQEIVN 959

Query: 400  ------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
                                    F + FE FL       PD D++F  + + +  +Y +
Sbjct: 960  QGLSGVDMPDKICPKCGKPLAKDGFDIPFETFLGFKGDKEPDIDLNFSNEYQSKAHKYTE 1019

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
              +G  +  +  T  +L  K A+  V +                                
Sbjct: 1020 VIFGEGQTFKAGTVSTLADKNAVGYVLKYY------------------------------ 1049

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRSD- 552
               R+ R      +R+   ++ +EG+      H  G+V       +    P+      D 
Sbjct: 1050 -EKRDIRKRRAENERI---AKGVEGVKSTTGQHPGGVVVLPNGEDIYSFTPVQHPANKDT 1105

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
              VT         A L+K D LG    T++++  D        ++ + IP DD +   L 
Sbjct: 1106 DIVTTHFDYHKIDANLLKLDILGHLDPTMIKRLEDLT-----GINATEIPLDDKDVMSLF 1160

Query: 613  TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV 672
             +   LGI   +  G      G+     +  + ++   +P    ++V      +G +  +
Sbjct: 1161 QSTKALGITPDDIMGTPLGTLGIPEFGTDFAMQMLVEAKPQYFTDLVRIAGLAHGTDVWL 1220

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEEMDKQKER 731
                 +      T    I     + +  +  G   +E+  +   + K +  +    +   
Sbjct: 1221 GNAQDLILSGTATITEAICTRDDIMVYLIHKGLDPAESFTIMERVRKGVVAKGKCDEWPT 1280

Query: 732  FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
            +     ++G+      +  ++      Y F K+HAAAY +++++ A+ K +YP+ + AA 
Sbjct: 1281 YKQHMQEHGVPDWYIGSCEKI-----KYMFPKAHAAAYVMMAWRVAYCKINYPLAYYAAF 1335

Query: 792  MTLEMDNVEKIKK--------------------------------FCQDARQFNIQIMPP 819
             ++     +  K                                   Q+        +P 
Sbjct: 1336 FSIRAGGFDYEKCCQGKARCEQEIKNLKAQSDLSATDKDVLIALRLVQEMYARGFDFLPM 1395

Query: 820  SVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
             +       FK+ DN+I     ++ G+G   A  +  A++   F SL+D   R    K++
Sbjct: 1396 DLYQSDSRYFKIVDNKILPPFNSLPGMGDKAAEQLQIAASQGKFLSLDDIKDR---GKVS 1452

Query: 879  RRVLESLVFAG 889
            + +++ +V  G
Sbjct: 1453 QTIIDKMVELG 1463



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 6/89 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--ACAAG-IQ 68
           V L  H+  S  +G   + +I+ +       A+AITD   + +   F         G  +
Sbjct: 363 VELHCHTKMSEFDGVSEITSIISRAKDWGHKALAITDHGVVQA---FCDADHMKGLGDFK 419

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
            I GC++ +       + N          
Sbjct: 420 VIYGCEIYLVDDTKRPVVNDRGQSLHDEY 448


>gi|58337539|ref|YP_194124.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227904180|ref|ZP_04021985.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC 4796]
 gi|58254856|gb|AAV43093.1| DNA polymerase III alpha chain [Lactobacillus acidophilus NCFM]
 gi|227868199|gb|EEJ75620.1| DNA polymerase III alpha chain [Lactobacillus acidophilus ATCC 4796]
          Length = 1437

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 138/886 (15%), Positives = 273/886 (30%), Gaps = 195/886 (22%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                + +L     G + L +LVS     D   +  R   S L  +  EGL   +G   G 
Sbjct: 609  RPSHMTVLAKNQAGLKNLYKLVSIASTKD-FYRIPRTPKSDLARLH-EGLFYGSGCWQGD 666

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQ------------ 202
            +  A        A ++   +        ++ +Q  + Y +  E  +++            
Sbjct: 667  VFIAMMQKGYDEAREKARFYD-------FLEVQPPKNYSQLIEDGLIKDEEQLEEIISNI 719

Query: 203  --LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
              L      P+VAT ++ ++   D     +L++   S     K +P +      +     
Sbjct: 720  YKLGKELNKPVVATGDAHYVEPHDAIYRTILISAQRSNPNRNKPQPDLHFYSTQEMLDAF 779

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
              +  D+  A E  +E   + +  +    PI         +      + E++        
Sbjct: 780  SFLGEDI--AKEIVIENTNKIADEISEIQPIKEGLYPPHIEH----ADEEMKKLTYDKAY 833

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                          +  + R+D ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 834  ELYGNPL------PKIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 886

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 887  VGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFENGEYGSGFDLPDKDCPECGTPLVKDG 946

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + F  FL      +PD D++F  D +     +++  +G +   +  T  ++  K A  
Sbjct: 947  QDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPDNSYRAGTIATVADKTAYG 1006

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                                          +   ++   +           L  ++  + 
Sbjct: 1007 YA----------------------------KHFDEERDLKLRNAE------LDRLASGVR 1032

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGIV+      +    P+            +T ++   I    ++KFD L
Sbjct: 1033 GVKRTTGQHPAGIVVVPDDMDIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDIL 1091

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGI 620
            G    T+++       Q    +D   IP DD     L +                 TLG+
Sbjct: 1092 GHDDPTMIRH-----LQDLSGIDPLTIPPDDPGVMSLFSGTKALGVTPEQIGSKTGTLGV 1146

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +R  LE  +P    +++ +  L                N ++ I +    +  
Sbjct: 1147 PEFGTRFVRGMLEETKPTTFSELLQISGLSHG-------TDVWLGNAEDLINNGTCDLKD 1199

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            ++     ++        +  +  G     A     ++        +       +    + 
Sbjct: 1200 VIGCRDNIM--------MDLIHWGVKPEVAFSTMESVRHGRGISDENMAILQKNKNIPDW 1251

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
               +              Y F K+HA AY +++ + AW K +YP  +  A  ++  D  +
Sbjct: 1252 YIDSCLKI---------KYMFPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLFD 1302

Query: 801  KIKK---------------------------------FCQDARQFNIQIMPPSVNTPCV- 826
             +                                      +  +  I+I    ++     
Sbjct: 1303 LVAMSHGKNTVKAAMKAIQDKGNDVSAKDKSLLTVLEIANECLERGIKIKMVDIDQSEAT 1362

Query: 827  DFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            DFK+   + I     A+ G+G   A+ I+ A A+K F S ED   R
Sbjct: 1363 DFKILDKHTILAPFNAVPGLGDNAAKQIVAARAEKKFLSKEDLAKR 1408



 Score = 74.8 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   +  + +       Q AIA+TD  ++ S  E      +  ++ + 
Sbjct: 334 VELHLHTNMSQLDATNTPTDFIKTAKKFGQKAIAVTDHGDVQSFPEAYSTGKSTDMKILY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 394 GVEANMIDDHALLVLNPAPMTYEDREFVIF 423


>gi|296451302|ref|ZP_06893042.1| DNA polymerase III PolC [Clostridium difficile NAP08]
 gi|296880346|ref|ZP_06904309.1| DNA polymerase III PolC [Clostridium difficile NAP07]
 gi|296259908|gb|EFH06763.1| DNA polymerase III PolC [Clostridium difficile NAP08]
 gi|296428587|gb|EFH14471.1| DNA polymerase III PolC [Clostridium difficile NAP07]
          Length = 1432

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 150/915 (16%), Positives = 304/915 (33%), Gaps = 203/915 (22%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             I L+   + G + L +++S  + ++   ++ RI  S L E   EGLI+ +   +G + +
Sbjct: 607  HITLIAKNSVGIKNLYKIISDAH-VNHFFRAPRILRSVLNEY-KEGLIIGSACEAGVVFQ 664

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--------------HRGYDRYRESQVVQL 203
            A   N S    K+++          Y+ +                     R    +++  
Sbjct: 665  AVKKNVSDEEMKKIIDLYD------YIEVMPIDNNRFMIDKGEVKDEEELRELNRKLIDT 718

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
            A       VAT +  FL + +     V +  +    V +++                   
Sbjct: 719  AKKFNKIPVATGDVHFLDKHEAILRKV-LKYSQGFKVDEEETYLHFRTTDEMLEEFSYLG 777

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
                  A E  VE +   + +++   PI         +      + ELR       +   
Sbjct: 778  EE---LAYEVVVENSNLIADMVEDIKPIPDDTYPPIIEG----SDVELREMCYKKAKRIY 830

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                       +  ++RLD ELN I    ++  ++I    +  +  +   VG  RGS   
Sbjct: 831  GDP------IPEIVQKRLDRELNSIISNGYAVMYIIAQKLVAKSLSDGYLVG-SRGSVGS 883

Query: 384  SVTAYALTITDIDPLR-------------------------------------------F 400
            S  A    IT+++PL                                             
Sbjct: 884  SFAATMSDITEVNPLPAHYICENEDCKYSFFYEIGEWGSGVDLPDKDCPKCGRKLAKNGH 943

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL  +    PD D++F  + +  + +Y +  +G   V +  T G++  K A   
Sbjct: 944  DIPFEVFLGFEGDKEPDIDLNFSGNYQPTIHKYTEELFGEGYVYRAGTIGTVAEKTAFGY 1003

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
              + ++                                            +L +S    G
Sbjct: 1004 ARKYVE----------------------------------ENNISVPNAEVLRLSNGCTG 1029

Query: 521  LYRHASTHAAG--IVIGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLG 575
            + R +  H  G  ++   + +    P+          +  T F+   I    ++K D LG
Sbjct: 1030 VKRTSGQHPGGVMVIPDYKDVYDFTPIQYPANDTSCGVITTHFDYHSI-SGRILKLDILG 1088

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIF 621
                T+++     + +    ++++ IP DD ET  L T+                 L + 
Sbjct: 1089 HDGPTIIR-----MLEDMTGINITEIPLDDKETMSLFTSTEALGVTPEEINCPIGCLAVP 1143

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            +  +  +RQ L   +P    +++ +  L                N ++ +      +  +
Sbjct: 1144 EFGTKFVRQMLLDTKPTTFAELVRISGLSHG-------TDVWVNNAQDLVREDIVGLKDV 1196

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            +     ++ Y         +  G     +  +  ++ K    + +      I+   KN +
Sbjct: 1197 ISTRDDIMNYL--------IFKGLPPKMSFTIMESVRKGKGLKPE-----HIAEMKKNNV 1243

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE- 800
             +    +  ++      Y F K+HA AY + S++ A+ K HYP  F A   T ++++ + 
Sbjct: 1244 PEWYIGSCKKI-----KYMFPKAHAVAYVMTSFRIAYCKVHYPEAFYATYFTTKVEDFDA 1298

Query: 801  --------------------------------KIKKFCQDARQFNIQIMPPSVNTPCV-D 827
                                             + +   +     I+++P  +      +
Sbjct: 1299 DLIVKGLDAIKSKINEIESLGNDATTKEKGMLTVLEVALEMYARGIKLLPVDIYKSDATE 1358

Query: 828  F-KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F  VG+  +   +AAI+G+G   A +I     +  F S ED   R    K+++ V+E+L 
Sbjct: 1359 FIIVGEKTLLPPMAAIQGLGGNAAINIQTERKNGEFISKEDLRKRT---KISKTVIETLT 1415

Query: 887  FAGALDCFGYSRMQL 901
              G+L+     R QL
Sbjct: 1416 NHGSLENMSE-RNQL 1429



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 36/86 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++   S+  ++++ A    PAIAITD   +    +      +  I+ + 
Sbjct: 333 VELHAHTQMSSMDAICSVKKLVERAAKWGHPAIAITDHGVVQGFPDAMNAGKSNNIKILY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +  +D+L + +          
Sbjct: 393 GVEGYLVEEDSLIIEDANDKELSQTF 418


>gi|255655317|ref|ZP_05400726.1| DNA polymerase III PolC-type [Clostridium difficile QCD-23m63]
          Length = 1432

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 150/915 (16%), Positives = 304/915 (33%), Gaps = 203/915 (22%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             I L+   + G + L +++S  + ++   ++ RI  S L E   EGLI+ +   +G + +
Sbjct: 607  HITLIAKNSVGIKNLYKIISDAH-VNHFFRAPRILRSVLNEY-KEGLIIGSACEAGVVFQ 664

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--------------HRGYDRYRESQVVQL 203
            A   N S    K+++          Y+ +                     R    +++  
Sbjct: 665  AVKKNVSDEEMKKIIDLYD------YIEVMPIDNNRFMIDKGEVKDEEELRELNRKLIDT 718

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
            A       VAT +  FL + +     V +  +    V +++                   
Sbjct: 719  AKKFNKIPVATGDVHFLDKHEAILRKV-LKYSQGFKVDEEETYLHFRTTDEMLEEFSYLG 777

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
                  A E  VE +   + +++   PI         +      + ELR       +   
Sbjct: 778  EE---LAYEVVVENSNLIADMVEDIKPIPDDTYPPIIEG----SDVELREMCYKKAKRIY 830

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                       +  ++RLD ELN I    ++  ++I    +  +  +   VG  RGS   
Sbjct: 831  GDP------IPEIVQKRLDRELNSIISNGYAVMYIIAQKLVAKSLSDGYLVG-SRGSVGS 883

Query: 384  SVTAYALTITDIDPLR-------------------------------------------F 400
            S  A    IT+++PL                                             
Sbjct: 884  SFAATMSDITEVNPLPAHYICENEDCKYSFFYEIGEWGSGVDLPDKDCPKCGRKLAKNGH 943

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
             + FE FL  +    PD D++F  + +  + +Y +  +G   V +  T G++  K A   
Sbjct: 944  DIPFEVFLGFEGDKEPDIDLNFSGNYQPTIHKYTEELFGEGYVYRAGTIGTVAEKTAFGY 1003

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
              + ++                                            +L +S    G
Sbjct: 1004 ARKYVE----------------------------------ENNISVPNAEVLRLSNGCTG 1029

Query: 521  LYRHASTHAAG--IVIGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLG 575
            + R +  H  G  ++   + +    P+          +  T F+   I    ++K D LG
Sbjct: 1030 VKRTSGQHPGGVMVIPDYKDVYDFTPIQYPANDTSCGVITTHFDYHSI-SGRILKLDILG 1088

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIF 621
                T+++     + +    ++++ IP DD ET  L T+                 L + 
Sbjct: 1089 HDGPTIIR-----MLEDMTGINITEIPLDDKETMSLFTSTEALGVTPEEINCPIGCLAVP 1143

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            +  +  +RQ L   +P    +++ +  L                N ++ +      +  +
Sbjct: 1144 EFGTKFVRQMLLDTKPTTFAELVRISGLSHG-------TDVWVNNAQDLVREDIVGLKDV 1196

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            +     ++ Y         +  G     +  +  ++ K    + +      I+   KN +
Sbjct: 1197 ISTRDDIMNYL--------IFKGLPPKMSFTIMESVRKGKGLKPE-----HIAEMKKNNV 1243

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE- 800
             +    +  ++      Y F K+HA AY + S++ A+ K HYP  F A   T ++++ + 
Sbjct: 1244 PEWYIGSCKKI-----KYMFPKAHAVAYVMTSFRIAYCKVHYPEAFYATYFTTKVEDFDA 1298

Query: 801  --------------------------------KIKKFCQDARQFNIQIMPPSVNTPCV-D 827
                                             + +   +     I+++P  +      +
Sbjct: 1299 DLIVKGLDAIKSKINEIESLGNDATTKEKGMLTVLEVALEMYARGIKLLPVDIYKSDATE 1358

Query: 828  F-KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            F  VG+  +   +AAI+G+G   A +I     +  F S ED   R    K+++ V+E+L 
Sbjct: 1359 FIIVGEKTLLPPMAAIQGLGGNAAINIQTERKNGEFISKEDLRKRT---KISKTVIETLT 1415

Query: 887  FAGALDCFGYSRMQL 901
              G+L+     R QL
Sbjct: 1416 NHGSLENMSE-RNQL 1429



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 35/86 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++   S+  ++++ A    PAIAITD   +    +      +  I+ + 
Sbjct: 333 VELHAHTQMSSMDAICSVKKLVERAAKWGHPAIAITDHGVVQGFPDAMNAGKSNNIKILY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +   D+L + +          
Sbjct: 393 GVEGYLVEDDSLIIEDANDKELSQTF 418


>gi|16800425|ref|NP_470693.1| DNA polymerase III PolC [Listeria innocua Clip11262]
 gi|21263558|sp|Q92C34|DPO3_LISIN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|16413830|emb|CAC96588.1| polC [Listeria innocua Clip11262]
 gi|313619136|gb|EFR90925.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            innocua FSL S4-378]
          Length = 1444

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 149/919 (16%), Positives = 283/919 (30%), Gaps = 177/919 (19%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             ++     N  M               +   T  G + L +L++   + +   +  RI  
Sbjct: 596  DIEFHDSLNDYMGEGDAYKRARPFHATIYAQTDVGLKNLFKLITMSNI-NYFYRVPRIPR 654

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NL 186
            S L+++  EGLI+ T  S G +  A      Q AEK    +   ++    +Y       L
Sbjct: 655  SQLKKM-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIEREL 713

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R           +V++      P+VAT N  +      + +  ++  +           
Sbjct: 714  VRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP-VDKIYRKILIHSQGGANPLNRAE 772

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                     +       F    +A E  V  +      +    PI       + D     
Sbjct: 773  LPDVHFRSTDEMLKEFAFLGEEKAKEIVVTNSNLVVDWMDDLKPIKDELYTPKIDG---- 828

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+E+RN +         +         +    RL+ EL  I    F+  +LI    ++ 
Sbjct: 829  AEDEVRNMSYGMAHQLYGE------KLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKK 882

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            +  +   VG  RGS   S  A    IT+++PL                            
Sbjct: 883  SLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDGSVGSGFDLPD 941

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL      +PD D++F  D +     Y +  +G + V +
Sbjct: 942  KDCPHCGTPYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFR 1001

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V R  +   +   R  +                            
Sbjct: 1002 AGTIGTVAEKTAFGYV-RNYERDMNMTIRGAE---------------------------- 1032

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVR---SDLPVTQFNM 560
                 +  +     G+ R    H  GI+       +    P+        S+   T F+ 
Sbjct: 1033 -----VDRLVAGCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATDSEWKTTHFDF 1087

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY----------- 609
              I    ++K D LG    T ++   D          +     D  + +           
Sbjct: 1088 HSIHD-NVLKLDILGHDDPTAIRMLQDLSG--IDPKTIPTDDPDVMKLFGSTESLGVKPA 1144

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             + +  GTLGI +  +  +RQ LE  +P    +++ +  L                N +E
Sbjct: 1145 DIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG-------TDVWLGNAEE 1197

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I +    +  ++     ++++         +  G   S A  +  ++ K      +   
Sbjct: 1198 LIKNKTCELPDVIGCRDDIMVFL--------IYQGLESSLAFKIMESVRKGKGLTEE--- 1246

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
                     N +      +  ++      Y F K+HAAAY +++ + A+ K H+P+ F A
Sbjct: 1247 --MEEAMIANKVPLWYIESCKKI-----KYMFPKAHAAAYVLMAVRIAYFKVHHPLYFYA 1299

Query: 790  ASMTLEMDNVEKIKK---------------------------------FCQDARQFNIQI 816
               T+  D+ +                                        +        
Sbjct: 1300 TYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHF 1359

Query: 817  MPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
                +     D F +  + +     AI  +GT  A+ I+ A  +  F S ED   R    
Sbjct: 1360 QKVDLYKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQR---G 1416

Query: 876  KLNRRVLESLVFAGALDCF 894
            K+++ +++ +   G L+  
Sbjct: 1417 KVSKTIIQYMDDQGCLEGL 1435



 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 342 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 401

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G + ++         N          
Sbjct: 402 GIEANLIDDGVPIAYNDQHIALEDAT 427


>gi|260890306|ref|ZP_05901569.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254]
 gi|260859926|gb|EEX74426.1| DNA polymerase III, alpha subunit [Leptotrichia hofstadii F0254]
          Length = 1151

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 164/950 (17%), Positives = 330/950 (34%), Gaps = 177/950 (18%)

Query: 57   EFSQKACAAGI-QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            +F     + GI + I   +++ D+Q N++ +    T         +LV    G + L EL
Sbjct: 274  KFLNMILSKGILKLI---EINTDLQPNIQNSETLNTM--------ILVKNQAGLRDLYEL 322

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS----GPIDRAFFFNSS-QVAEKR 170
            VSR  +   G +  RI  + L  +    LI  +  +S    G +   +   +     E++
Sbjct: 323  VSRSNIEFFGMRRPRIPKTLLNSMRENLLIASSASASERNKGELVNLYLRGAEKDDIEEK 382

Query: 171  LLTFKKLFGDRLYVNLQRH--------------RGYD--RYRESQVVQLAYTHELPLVAT 214
               +        Y+ +  H                YD  +       +L  +    +VAT
Sbjct: 383  ARFYD-------YIEIHPHTNYADMVEKTSKEIESYDIIKEMNKYFYELGKSQNKIVVAT 435

Query: 215  NNSLFLSEEDYEAHDVLM---AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
             ++ +L E +    +VL+        T  S+  R     D  L  ++    + S      
Sbjct: 436  GDTHYLEEREAINRNVLLLGSGTMWKTETSEGVRGYEFFDRKLYFKTTEEILESFNYLGE 495

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
            E   E+    +  +      +            +  E+E+R    + L+    +      
Sbjct: 496  EAAQEVVVENTHKINDMIEQVRPIPTGFYPPKIEGAEDEVRKMTYSKLKELYGENID--- 552

Query: 332  YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
                D ++R++ ELN I +  F+  +LI    +  +      VG  RGS   S+ AY + 
Sbjct: 553  ---PDLKERVEKELNSIIQNGFAVLYLIAQKLVHKSVDAGYLVG-SRGSVGSSIVAYLMG 608

Query: 392  ITDID--------------------------PLRFSL-------------LFERFLNPDR 412
            IT+++                          P +                 FE F+  + 
Sbjct: 609  ITEVNGLYPHYRCPKCKHTEFMNEEGSGVDYPDKNCPECGTKYIKDGHAIPFEVFMGFNG 668

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
              +PD D++F  + + E+ +Y +  +G + V +  T  +L  K A   V + L+      
Sbjct: 669  DKVPDIDLNFSGEYQGEIHKYTEELFGSDNVFRAGTISTLAEKNAFGYVKKYLEEVEG-- 726

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
                                      +           ++ I++  EG  +    H  G+
Sbjct: 727  ----------------------TPEIK------ERKAEVMRIAKGCEGARKTTGQHPGGM 758

Query: 533  VIGDRP--LSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            ++  +   +    P+ R           T F+   +++  L+K D LG    T L+    
Sbjct: 759  IVVPKDKSIYDFCPIQRPANDMKATSKTTHFDYHVMDE-QLVKLDILGHDDPTTLR---- 813

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIA 645
             + Q    VD+  IP DD E   L +    L +   ++ S      +       ++ +  
Sbjct: 814  -ILQDLTGVDIYTIPLDDKEVMSLFSGTEALSVTPDEIGSPTGTSGIPEFGTSFVKQM-- 870

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
             +   RP     +V  +   +G +  ++           T   II     +    +  G 
Sbjct: 871  -LVDTRPKTFAELVRISGLSHGTDVWLNNAQDYVRSGIATLSQIITVRDDIMNKLIDDGL 929

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
              S A  +   + K    +  ++ + +     ++G+ +    +  ++      Y F K H
Sbjct: 930  DKSLAFSIMEFVRKGQPTKNREKWQEYSKTMKEHGVEQWYIDSCEKI-----KYMFPKGH 984

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC--QDARQFNIQIMP----- 818
            A AY +++ + A+ K HYP+EF  A +  ++ + +    F   ++ ++  +++       
Sbjct: 985  AVAYVMMAVRIAYFKVHYPIEFYTAFLNRKVGDFKMTTMFRPVEELKRAKMEMDRKGNLN 1044

Query: 819  -------------PSVNTPCVD-------------FKVGDNRIYYSLAAIKGVGTTTARH 852
                           ++   ++             F + D +I   L A+ G+G   A +
Sbjct: 1045 AKEKQELFLYEILIEMHYRKIELEQIDIYKSEAKLFTIQDGKIRMPLIAMDGLGEAVAEN 1104

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            I+       F S+ED   R    KLN+ ++E +   G L     +  Q L
Sbjct: 1105 IVSERKV-DFLSIEDLVKRT---KLNKTIVELMKEYGCLKDLSATNQQTL 1150



 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 1/90 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L  H++ S + G +S+ +   +        IA+TD   + S     ++A     + I 
Sbjct: 32  IELHAHTNMSEMSGVMSIKDYAKRAKEFGHSGIAVTDYGVVHSFPFAFKEA-NEDFKVIF 90

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G +  +   +   +TN           +V 
Sbjct: 91  GMEAYVVDDEQDLITNPKDKMIEDEIYVVF 120


>gi|326803581|ref|YP_004321399.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus
            urinae ACS-120-V-Col10a]
 gi|326651581|gb|AEA01764.1| DNA polymerase III, alpha subunit, Gram-positive type [Aerococcus
            urinae ACS-120-V-Col10a]
          Length = 1437

 Score =  205 bits (521), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 145/935 (15%), Positives = 306/935 (32%), Gaps = 186/935 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A  +         +    Q N  +               +L    +G + L +LVS
Sbjct: 580  FVKEAKESH-------DMVYHDQLNRDIGQGDAYKKGRPFHATILAKNQKGLKDLFKLVS 632

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
                +D   +  RI  S L+E   E L++ +  S G +  A      + A+K    +   
Sbjct: 633  ASN-VDYFHRVPRIPRSLLKE-HREHLLIGSACSEGEVFTAAMQKGKETAKKFAEFYD-- 688

Query: 178  FGDRLYVNLQR--------------HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEE 223
                 Y+ +Q               +        + +V +     + +VAT ++ +L+ E
Sbjct: 689  -----YLEIQPKASYEPLLRNQDIINNEALENIINDLVDIGDELGITVVATGDAHYLNPE 743

Query: 224  DYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
            D    ++L+ ++  +           T    L + + +         A E  V  +   +
Sbjct: 744  DKIYREILINSIKSNRSKYFPRAHFRTTKEMLDDFAFLGEEK-----AFELVVTNSNAIA 798

Query: 283  FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
              ++   PI  +      D      E  +RN A         +         +   +RL+
Sbjct: 799  DSIEFVEPIHDKLYTPHIDG----AEESIRNDAFTKAHEIYGENL------PELIEERLE 848

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--- 399
             EL+ I    F+  + I    +  + ++   VG  RGS   S  A  L IT+++PL    
Sbjct: 849  RELDSIIGNGFAVIYYIAQKLVWKSNEDGYIVG-SRGSVGSSFAATMLGITEVNPLPPHY 907

Query: 400  --------------------------------------FSLLFERFLNPDRMSMPDFDID 421
                                                    + FE FL  +   +PD D++
Sbjct: 908  VCLNCHYSHFYTHGEIGSGFDLEDKDCPECGQPLSKDGHDIPFETFLGFNGDKVPDIDLN 967

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  + + +   Y +  +G + V +  T  ++  K A   V                    
Sbjct: 968  FSGEYQAQAHNYTKVLFGEDHVYKAGTISTVADKTAFGYV-------------------- 1007

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPL 539
               +          +                  ++   G+ R    H  GI++      +
Sbjct: 1008 -LGYDRDHNLNLRQTEKDFL-------------AKGATGVKRTTGQHPGGIIVIPENMDV 1053

Query: 540  SQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
                P+         D   T F+   I    ++K D LG    T+++K      Q    +
Sbjct: 1054 YDFTPIQYPADEQTADWRTTHFDFHSIHD-NVLKLDCLGHDDPTVIRK-----LQDLSGI 1107

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            + + IP DD E Y L     +LG+   Q+ S      +       +  +   +    P  
Sbjct: 1108 EPTDIPMDDPEVYKLFNGTESLGVSPEQIFSKTGTLGIPEFGTPFVRQM---LEATHPST 1164

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
               ++  +   +G +  +     +          +I     + +  +  G   S++  + 
Sbjct: 1165 FAELLQISGLSHGTDVWLGNAETLVSEKGMELKDVIGCRDDIMMDLIHMGVPKSDSFQIM 1224

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
              + K      +       +   ++ + +    +  ++      Y F K+HAAAY + + 
Sbjct: 1225 EKVRKGKGLSPE-----HQAIMKEHEVPEWYMDSCQKI-----KYMFPKAHAAAYVINAL 1274

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------------------------------K 801
            + AW K H+P+ +  A +++  ++ +                                  
Sbjct: 1275 RVAWFKVHHPIWYYCAYLSVRAEDFDLKAMAGGLESNKDRLKEIKAKGNDASAKEKALQI 1334

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCV-DFKVG-DNRIYYSLAAIKGVGTTTARHIMEASAD 859
            + +   +  +  ++     +      DF +  ++ +     A+ G+G + A+ +++A  +
Sbjct: 1335 VLELVNEMWERGLKFKMVDLEKSDAKDFVIEGEDTLIAPFRAVSGLGVSVAQQVVKAREE 1394

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             PF S ED   R    K+++ V++ L    AL+  
Sbjct: 1395 SPFLSKEDLKIR---GKVSQSVIDHLDECNALNGL 1426



 Score =  102 bits (253), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 42/100 (42%)

Query: 2   TQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
              + +    V L +H++ S L+   S+ + + + AA    AIA+TD  N+ +  E SQ 
Sbjct: 325 QDTMPEDQKRVELHLHTNMSALDATNSVTDFVKQAAAWGHKAIAVTDHGNVQAFPEASQA 384

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           A   G++ I G +  +         N G         ++ 
Sbjct: 385 AKDTGVKLIYGMEAYVVDDGVPIAYNPGHVELENATYVIF 424


>gi|165928515|ref|ZP_02224347.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165919449|gb|EDR36805.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Orientalis
           str. F1991016]
          Length = 569

 Score =  205 bits (521), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 141/580 (24%), Positives = 238/580 (41%), Gaps = 34/580 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L V + +SL E AL   N +         A+   D+ N+ S +   + A    +  I G 
Sbjct: 4   LMVRTDFSLGESALKAENAVKIARDAGYTAVISADSMNIASVIPLQRAA-GDDMAVICGV 62

Query: 74  QLDIDMQDNLKMTNQGKTP---------FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +L++      +   +                      L+   +GY+ + EL++     +Q
Sbjct: 63  KLNVVDDPTYEHRARLAKESERCMESLVRDRSYCFTALIKNEQGYRDVCELMTLANKREQ 122

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLY 183
                R+ L  L     +G I+L    +  I   F         K + T     G D  Y
Sbjct: 123 FYFVPRLALDQLAAAYAKGNIIL---LTSDIGSVFQRRDFA---KIIGTLVTAGGRDNFY 176

Query: 184 VNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
             +  H   +      + +++A   ++  VA   + + + +D +  D+   V ++  + Q
Sbjct: 177 SVVYPHPTPFYDQINVRAMKVASALKIEPVAFYPAYYEAVDDADIKDIAHMVTNNIKIDQ 236

Query: 243 KDR-----PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             R      R    +  ++  E +  FS   +        +     I++         + 
Sbjct: 237 PHRLRIPHQRDNAVNGRRHLLEALKAFSVRMDVPVTAAMASTTQDTIIEACTWRW-HELP 295

Query: 298 KECDDIQKEEENELRNKAVAGLEVR---LAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                +  +E   L   AVAGL  R      G        + Y  RL +E++ + R+ F 
Sbjct: 296 PALPKMADDEPATLMKLAVAGLRKRLTTKEFGYTPPASEHRVYVDRLKYEMDTLTRLGFC 355

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
           GYFL+V D +  +++  IPVGPGRGS AGS+ A+ + IT++DP+R  LLFERF+NP+R+ 
Sbjct: 356 GYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFINPERLD 415

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
           +PD D+DF Q RR EVI Y+  +YG + VA I  F  L A +ALRD  R     Y     
Sbjct: 416 LPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARI----YGVDAA 471

Query: 475 LCKLIPNDPAHPVSLQAIAD-DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
              +            ++ +   +               + + KL+ L R    HAAG++
Sbjct: 472 DMAVSKEFKNLEDDSLSLEELREQLASLDKYATKYPEAFKAACKLQSLMRGFGRHAAGMI 531

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
           +   PL +  P+      +     F+ ++ E  GLIK D 
Sbjct: 532 VAGVPLVERTPVELR--GNARCIAFDKRYCEAMGLIKLDV 569


>gi|258508612|ref|YP_003171363.1| DNA polymerase III PolC [Lactobacillus rhamnosus GG]
 gi|257148539|emb|CAR87512.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
 gi|259649919|dbj|BAI42081.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus GG]
          Length = 1444

 Score =  205 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 150/885 (16%), Positives = 287/885 (32%), Gaps = 172/885 (19%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                 ++   T  G + L +LVS   +     +  R+  S LQ++  EGL++ +  SSG 
Sbjct: 610  RPSHAIVFAKTQAGLKNLFKLVSLSNVK-YFYRVPRVPRSQLQKL-REGLLVGSACSSGE 667

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--------------HRGYDRYRESQV 200
            +  A        A  +   +        Y+ +Q                  + +    ++
Sbjct: 668  VFTAMMQKGEAEARAKAAFYD-------YLEIQPPAVYQPLLEADLIKGESHLKDILQKI 720

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
            V++    E P+V T +  +L + D     +L+        +  +R  +   H+   R  +
Sbjct: 721  VKIGDELEKPVVVTGDVHYLDQHDAIYRKILIHSQGG--ANPLNRHSLPDVHFRSTREML 778

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
                    E  +  V                  +      +      E +L++  +A   
Sbjct: 779  DDFSWLGEEKAQQLVVTNSNLIADWIDDNITPVKDKLYTPEVPGV--EEKLKHDVMATAY 836

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                          +   QRLD EL  I    FS  + I    +  + K+   VG  RGS
Sbjct: 837  ELYGNPL------PEIVAQRLDKELKSIIGNGFSVIYNIAQRLVLKSNKDGYLVG-SRGS 889

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 890  VGSSLAATMAEITEVNPLPPHYRCPKCQYSEFFTHGEVGSGFDLPDKTCPKCGTELHKDG 949

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + FE FL      +PD D++F  D +     Y++  +G +   +  T G++  K A  
Sbjct: 950  HDIPFETFLGFHGDKVPDIDLNFSGDYQPVAHNYIKVMFGEDHSFRAGTIGTVADKTAYG 1009

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V +A +    Q  R  +                                 +  ++Q   
Sbjct: 1010 YV-KAYERDTGQQLRGAE---------------------------------IDRLAQGDT 1035

Query: 520  GLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGI+I   D  +    P+             T F+   I    ++K D L
Sbjct: 1036 GVKRTTGQHPAGILIVPADMDIYDFTPIQYPADDQNAAWMTTHFDFHSIHD-NILKMDVL 1094

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQAL 632
            G    T+++     + Q    V+   IP DD     L +   +LG+   Q+ S      +
Sbjct: 1095 GHDDPTMIR-----MLQDLSGVEPKSIPTDDPGVMALFSGTESLGVTPEQINSKMGTLGI 1149

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
                   +  ++      +P     ++  +   +G +  +     +      T   +I  
Sbjct: 1150 PEFGTRFVRGMLEET---KPTTFSELLQISGLSHGTDVWLGNAEELIKQGIVTLKEVIGC 1206

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
               + +  +  G   S A  +   + K      D     +     +N       ++    
Sbjct: 1207 RDNIMMDLIHWGMDDSMAFNIMEHVRKGRGIPDD-----WQKAMRENENVPDWYIDSCLK 1261

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------ 800
            +     Y F K+HA AY +++ + AW K HYP+ +  A  ++  ++ +            
Sbjct: 1262 I----KYMFPKAHATAYILMALRIAWFKVHYPLVYYTAYFSVRAEDFDLAAMSHGKEAVK 1317

Query: 801  ---------------------KIKKFCQDARQFNIQIMPPSVNTP-CVDFKV-GDNRIYY 837
                                  + +   +  +   +I    V      DF +  D+ I  
Sbjct: 1318 AAMKEITDKGMDASAKEKQLLTVLEIANECLERGFKIKMIDVTKSDSHDFLIQDDHTILA 1377

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
               A+ G+G   A+ I+ A  +KPF S ED  +R    K+++ ++
Sbjct: 1378 PFRAVPGLGDNVAKQIVAAREEKPFLSKEDLANR---GKVSKTLI 1419



 Score = 88.7 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 39/91 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++   S+ + +++  A    AIA+TD   L +  E    A  AG++ + 
Sbjct: 334 VELHLHTNMSQMDATNSITDFVNRAKAWGHKAIAVTDHAGLQAYPEAHTAAAKAGLKMLY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           G ++++            +         V+ 
Sbjct: 394 GVEINLVDDGTPVAYRADEPRVLADAEYVVF 424


>gi|229552421|ref|ZP_04441146.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
 gi|229314158|gb|EEN80131.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
          Length = 1437

 Score =  205 bits (520), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 149/885 (16%), Positives = 287/885 (32%), Gaps = 172/885 (19%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                 ++   T  G + L +LVS   +     +  R+  S LQ++  EGL++ +  SSG 
Sbjct: 603  RPSHAIVFAKTQAGLKNLFKLVSLSNVK-YFYRVPRVPRSQLQKL-REGLLVGSACSSGE 660

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--------------HRGYDRYRESQV 200
            +  A        A  +   +        Y+ +Q                  + +    ++
Sbjct: 661  VFTAMMQKGEAEARAKAAFYD-------YLEIQPPAVYQPLLEADLIKGESHLKDILQKI 713

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
            V++    E P+V T +  +L + D     +L+              R +        +  
Sbjct: 714  VKIGDDLEKPVVVTGDVHYLDQHDAIYRKILIHSQGGA----NPLNRHSLPDVHFRSTRE 769

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
            +        A +    +    + I  +    +    +K         E +L++  +A   
Sbjct: 770  MLDDFSWLGAEKAQKLVVTNSNLIADLIDDDITPVKDKLYTPEVPGVEEKLKHDVMATAY 829

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                          +   QRLD EL  I    FS  + I    +  + K+   VG  RGS
Sbjct: 830  ELYGNPL------PEIVAQRLDKELKSIIGNGFSVIYNIAQRLVLKSNKDGYLVG-SRGS 882

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 883  VGSSLAATMAEITEVNPLPPHYRCPKCQYSEFFTHGEVGSGFDLPDKTCPKCGTELHKDG 942

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + FE FL      +PD D++F  D +     Y++  +G +   +  T G++  K A  
Sbjct: 943  HDIPFETFLGFHGDKVPDIDLNFSGDYQPVAHNYIKVMFGEDHSFRAGTIGTVADKTAYG 1002

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V +A +    Q  R  +                                 +  ++Q   
Sbjct: 1003 YV-KAYERDTGQQLRGAE---------------------------------IDRLAQGDT 1028

Query: 520  GLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGI+I   D  +    P+             T F+   I    ++K D L
Sbjct: 1029 GVKRTTGQHPAGILIVPADMDIYDFTPIQYPADDQNAAWMTTHFDFHSIHD-NILKMDVL 1087

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQAL 632
            G    T+++     + Q    V+   IP DD     L +   +LG+   Q+ S      +
Sbjct: 1088 GHDDPTMIR-----MLQDLSGVEPKSIPTDDPGVMALFSGTESLGVTPEQINSKMGTLGI 1142

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
                   +  ++      +P     ++  +   +G +  +     +      T   +I  
Sbjct: 1143 PEFGTRFVRGMLEET---KPTTFSELLQISGLSHGTDVWLGNAEELIKQGIVTLKEVIGC 1199

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
               + +  +  G   S A  +   + K      D     +     +N       ++    
Sbjct: 1200 RDNIMMDLIHWGMDDSMAFNIMEHVRKGRGIPDD-----WQKAMRENENVPDWYIDSCLK 1254

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------ 800
            +     Y F K+HA AY +++ + AW K HYP+ +  A  ++  ++ +            
Sbjct: 1255 I----KYMFPKAHATAYILMALRIAWFKVHYPLVYYTAYFSVRAEDFDLAAMSHGKEAVK 1310

Query: 801  ---------------------KIKKFCQDARQFNIQIMPPSVNTP-CVDFKV-GDNRIYY 837
                                  + +   +  +   +I    V      DF +  D+ I  
Sbjct: 1311 AAMKEITDKGMDASAKEKQLLTVLEIANECLERGFKIKMIDVTKSDSHDFLIQDDHTILA 1370

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
               A+ G+G   A+ I+ A  +KPF S ED  +R    K+++ ++
Sbjct: 1371 PFRAVPGLGDNVAKQIVAAREEKPFLSKEDLANR---GKVSKTLI 1412



 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 39/91 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++   S+ + +++  A    AIA+TD   L +  E    A  AG++ + 
Sbjct: 327 VELHLHTNMSQMDATNSITDFVNRAKAWGHKAIAVTDHAGLQAYPEAHTAADKAGLKMLY 386

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           G ++++            +         V+ 
Sbjct: 387 GVEINLVDDGTPVAYRAEEPRVLADAEYVVF 417


>gi|51892650|ref|YP_075341.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
            14863]
 gi|51856339|dbj|BAD40497.1| DNA polymerase III alpha subunit [Symbiobacterium thermophilum IAM
            14863]
          Length = 1475

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 148/916 (16%), Positives = 306/916 (33%), Gaps = 162/916 (17%)

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            G +  +   + L      +   P      +LV T  G + L +L+S  ++ +   ++ R+
Sbjct: 619  GVE-TVADLNRLTKGINVEQLRP--YHTTVLVKTQAGMKNLYKLISLSHI-EYFNRTPRV 674

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFK--KLFGDR---LYVN 185
              S L++   EGL++ +    G +  A       +  E+    +   ++         + 
Sbjct: 675  PRSELEK-HREGLLVGSSTYGGQLFDALIRGVPDEELEQMASWYDYLEILPRDCLAFLLE 733

Query: 186  LQRHRGYDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
              +    ++      ++ +L      P+ A +++ FL       H  +        +  +
Sbjct: 734  SGQVNSEEQLLSLNRRIYELGKKLGKPVCAVSDAHFLDP-----HQQVFRRILKHGIGFR 788

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            D                   +     A E  VE     +  ++    +  +        +
Sbjct: 789  DEYDRPFYLRTTQEMLDEFAYLGEQAAYEVVVENPNAIAAQIEKVKVVPDKLHPP----V 844

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +    E R  +   ++              +    RL+ ELN I    F+  + I    
Sbjct: 845  LEGSVEETRRLSWEKVKRVYGDPV------PEKIAHRLEKELNAIIGNGFAVSYYISHLL 898

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------ 399
            ++ + +    VG  RGS   S  A+A+ IT+++ L                         
Sbjct: 899  VKKSMELGYLVG-SRGSVGSSFVAWAMDITEVNALPPHYICPQCKYLEWHDDGKTGSGFD 957

Query: 400  -----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG-HE 441
                               + FE FL      +PD D++F  + ++ + +Y +   G  +
Sbjct: 958  LPRKDCPRCGTPLDRDGQDIPFETFLGFKGDKVPDIDLNFSGEVQNRIQKYSEELLGGEK 1017

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
             V +  T G++  K A   V                            +A  ++SR    
Sbjct: 1018 YVFKAGTVGTIAEKTAFGMV----------------------------RAWLEESRITGV 1049

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVT 556
            R A      +  ++Q L G+ R    H  G+V+      + ++ P+          +  T
Sbjct: 1050 REAH-----IGYLAQGLAGVKRTTGQHPGGMVVCPVGMEIEEVTPVQYPADDRSSGVKTT 1104

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR--GVKVDLSLIPFDDHETYHLLTT 614
             F+    E   L+K D LG    T+L+   D   ++      D+  +P DD +   L + 
Sbjct: 1105 HFDYHSFE-QALMKLDILGHDDPTMLKMLQDLYREKKGDPDFDVRKVPVDDPQVLALFSP 1163

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
             G   +   +          + P+     +  + +       + +V  +  +    + + 
Sbjct: 1164 GGNRVLGIEDGKLQFDLGTIVLPEMGTRFVRQMLMETSPRNFSDLVRISGLSHGTDVWTN 1223

Query: 675  H-PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
            +   +       Q VI  ++ +  +  +  G   + A  +  ++ K      + ++    
Sbjct: 1224 NAQELVKKGIPFQDVIGCRDDI-MVQLIYWGVEPATAFKIMESVRKGKGLTPEMEETMRA 1282

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
                          + +    K   Y F K+HAAAY +   + AW K H P+ F AA ++
Sbjct: 1283 CN----------VPDWYIWSCKQIKYMFPKAHAAAYVLSCLRIAWFKVHEPLLFYAAYLS 1332

Query: 794  LEMDNVEK---------IKKFCQDARQFNIQIMPPSVNTPCVDFKVGD---NRIYY---- 837
            +   +V+          ++++ Q+         P   ++      V +     I +    
Sbjct: 1333 VRAGSVDANLLVAGPEAVRRYVQEIEAKGKDATPKEKDSLTEYELVEEAFLRGIRFNRVD 1392

Query: 838  -------------------SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
                                  A+ G+G + A+ I+EA A  PF S ED  +R    +LN
Sbjct: 1393 LYRSEATRYLIDGENTLLCPFNALPGLGDSAAQAIVEARAQGPFHSKEDLKNRA---RLN 1449

Query: 879  RRVLESLVFAGALDCF 894
            + V+E L   G L+  
Sbjct: 1450 KAVMELLEGHGCLEGL 1465



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI---- 67
           V L  H++ S ++  +    ++         A+AITD       ++    A    +    
Sbjct: 367 VELHAHTTMSAMDALIDPAELVKTAVRWGHKAVAITDH----GVVQAFPAASHVKVPDDF 422

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           + I GC+L +       +    K         V+L
Sbjct: 423 RVIYGCELFLVDDGTAVVQRPPKDVPLAGAEFVVL 457


>gi|164688523|ref|ZP_02212551.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM 16795]
 gi|164602936|gb|EDQ96401.1| hypothetical protein CLOBAR_02168 [Clostridium bartlettii DSM 16795]
          Length = 1432

 Score =  204 bits (519), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 150/945 (15%), Positives = 305/945 (32%), Gaps = 201/945 (21%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F       G +          + D  ++             I L+     G + L ++
Sbjct: 574  IKFLDMLQKKGAK---------KLSDVNEVLGGIDYTKLKTKHITLIAQNLVGVKNLYKI 624

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  + ++   ++ RI  S L E   EG+I+ +   +G + +A   N +    K ++   
Sbjct: 625  VSDAH-VNHFYRAPRILKSVLLE-HKEGIIVGSACEAGEVFQAVKQNKNDDEIKEIIDLY 682

Query: 176  KLFGDRLYVNLQ---------RHRG---YDRYR--ESQVVQLAYTHELPLVATNNSLFLS 221
                   Y+ +          R+      D  R    +++++A       VAT +  F+ 
Sbjct: 683  D------YIEVMPIDNNRFMIRNGEVKDEDELRDLNRRMIEIAKKFGKIPVATGDVHFID 736

Query: 222  EEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
            + +      ++  +    +  ++                         A E  VE   + 
Sbjct: 737  KHEA-VFRRVLKYSQGFSLDDEETYLHFRTTDEMLEEFKYLGEE---LAYEVVVENTNKV 792

Query: 282  SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            + +++   PI         +      + ELR       +              +  ++RL
Sbjct: 793  ADMVEDFLPIPNETFPPVIEG----SDTELREMCYNKAKRIYGDPM------PEVVKKRL 842

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-- 399
            D ELN I    ++  ++I    +  +  +   VG  RGS   S+ A    IT+++PL   
Sbjct: 843  DRELNSIISNGYAVMYIIAQKLVTKSLADGYLVG-SRGSVGSSLAATMSDITEVNPLPAH 901

Query: 400  -----------------------------------------FSLLFERFLNPDRMSMPDF 418
                                                       + FE FL  +    PD 
Sbjct: 902  YICENEDCKYSYFYAVGEWGSGVDLPDKDCPKCGRKLKKDGHDIPFEVFLGFEGDKEPDI 961

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F    +  + +Y +  +G   V +  T G++  K A     + ++            
Sbjct: 962  DLNFSGSYQPVIHKYTEELFGEGHVYRAGTIGTVADKTAYGYAKKYVE------------ 1009

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGD 536
                                      D     +L +++   G+ R +  H  G+  +   
Sbjct: 1010 ----------------------ENDLDVPSAEVLRLAKGCTGVKRTSGQHPGGVMVIPNY 1047

Query: 537  RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
            + +  + P+          +  T F+   I    ++K D LG    T+++   D      
Sbjct: 1048 KEVYDITPIQYPANDVNCGVITTHFDYHSI-SGRILKLDILGHDVPTIIRMIEDITGLDA 1106

Query: 594  VKVDLSLIPFDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
              + L         T           +    G+L I +  +S +RQ L   +P    +++
Sbjct: 1107 TTIPLDDKETMSIFTSTEALGVTPEEINCPIGSLAIPEFGTSFVRQMLLDTKPTTFAELV 1166

Query: 645  ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
             +  L                N ++ +V        ++     ++ Y         L  G
Sbjct: 1167 RISGLSHG-------TDVWLNNAQDLVVDKVVEFKDVISTRDDIMNYL--------LFKG 1211

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
                 A  +   + K    + +     FI   +K+ + +    +  ++      Y F K+
Sbjct: 1212 LPPKMAFTIMENVRKGKGLKPE-----FIEEMNKHDVPQWYVDSCQKI-----KYMFPKA 1261

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------------------ 800
            HA AY ++S++ A+ K HYP  F A   T +  + +                        
Sbjct: 1262 HAVAYVMMSFRLAYYKVHYPAAFYATYFTTKAQDFDADLIVGGLDSIKQKINEIHELGND 1321

Query: 801  ---------KIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDN-RIYYSLAAIKGVGTTT 849
                      + +   +     I+I+P  +       F V D+  I   + A++GVG   
Sbjct: 1322 ATAKDKTMLTVLEVALEMYARKIKIIPVDIYKSDATKFIVVDDSTILPPMIALQGVGENA 1381

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            A +I +      F S ED   R    K+++ V+E+L   G+L+  
Sbjct: 1382 AINIQKERESGEFISKEDLRKRT---KISKTVVETLSNHGSLNDM 1423



 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 30/86 (34%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++       ++ + +     AIAITD   + +  E      A GI+ + 
Sbjct: 333 VELHAHTQMSSMDALCQTKKLVKQASQWGHKAIAITDHGVVQAFPEAMDAGKANGIKILY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +   +   +            
Sbjct: 393 GVEGYLVEDNAPIIREANDKDLSQTF 418


>gi|258539791|ref|YP_003174290.1| DNA polymerase III PolC [Lactobacillus rhamnosus Lc 705]
 gi|257151467|emb|CAR90439.1| DNA polymerase III alpha subunit [Lactobacillus rhamnosus Lc 705]
          Length = 1444

 Score =  204 bits (519), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 149/885 (16%), Positives = 287/885 (32%), Gaps = 172/885 (19%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                 ++   T  G + L +LVS   +     +  R+  S LQ++  EGL++ +  SSG 
Sbjct: 610  RPSHAIVFAKTQAGLKNLFKLVSLSNVK-YFYRVPRVPRSQLQKL-REGLLVGSACSSGE 667

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--------------HRGYDRYRESQV 200
            +  A        A  +   +        Y+ +Q                  + +    ++
Sbjct: 668  VFTAMMQKGEAEARAKAAFYD-------YLEIQPPAVYQPLLEADLIKGESHLKDILQKI 720

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
            V++    E P+V T +  +L + D     +L+              R +        +  
Sbjct: 721  VKIGDDLEKPVVVTGDVHYLDQHDAIYRKILIHSQGGA----NPLNRHSLPDVHFRSTRE 776

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
            +        A +    +    + I  +    +    +K         E +L++  +A   
Sbjct: 777  MLDDFSWLGAEKAQKLVVTNSNLIADLIDDDITPVKDKLYTPEVPGVEEKLKHDVMATAY 836

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                          +   QRLD EL  I    FS  + I    +  + K+   VG  RGS
Sbjct: 837  ELYGNPL------PEIVAQRLDKELKSIIGNGFSVIYNIAQRLVLKSNKDGYLVG-SRGS 889

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 890  VGSSLAATMAEITEVNPLPPHYRCPKCQYSEFFTHGEVGSGFDLPDKTCPKCGTELHKDG 949

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + FE FL      +PD D++F  D +     Y++  +G +   +  T G++  K A  
Sbjct: 950  HDIPFETFLGFHGDKVPDIDLNFSGDYQPVAHNYIKVMFGEDHSFRAGTIGTVADKTAYG 1009

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V +A +    Q  R  +                                 +  ++Q   
Sbjct: 1010 YV-KAYERDTGQQLRGAE---------------------------------IDRLAQGDT 1035

Query: 520  GLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGI+I   D  +    P+             T F+   I    ++K D L
Sbjct: 1036 GVKRTTGQHPAGILIVPADMDIYDFTPIQYPADDQNAAWMTTHFDFHSIHD-NILKMDVL 1094

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQAL 632
            G    T+++     + Q    V+   IP DD     L +   +LG+   Q+ S      +
Sbjct: 1095 GHDDPTMIR-----MLQDLSGVEPKSIPTDDPGVMALFSGTESLGVTPEQINSKMGTLGI 1149

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
                   +  ++      +P     ++  +   +G +  +     +      T   +I  
Sbjct: 1150 PEFGTRFVRGMLEET---KPTTFSELLQISGLSHGTDVWLGNAEELIKQGIVTLKEVIGC 1206

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
               + +  +  G   S A  +   + K      D     +     +N       ++    
Sbjct: 1207 RDNIMMDLIHWGMDDSMAFNIMEHVRKGRGIPDD-----WQKAMRENENVPDWYIDSCLK 1261

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------ 800
            +     Y F K+HA AY +++ + AW K HYP+ +  A  ++  ++ +            
Sbjct: 1262 I----KYMFPKAHATAYILMALRIAWFKVHYPLVYYTAYFSVRAEDFDLAAMSHGKEAVK 1317

Query: 801  ---------------------KIKKFCQDARQFNIQIMPPSVNTP-CVDFKV-GDNRIYY 837
                                  + +   +  +   +I    V      DF +  D+ I  
Sbjct: 1318 AAMKEITDKGMDASAKEKQLLTVLEIANECLERGFKIKMIDVTKSDSHDFLIQDDHTILA 1377

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
               A+ G+G   A+ I+ A  +KPF S ED  +R    K+++ ++
Sbjct: 1378 PFRAVPGLGDNVAKQIVAAREEKPFLSKEDLANR---GKVSKTLI 1419



 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 39/91 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++   S+ + +++  A    AIA+TD   L +  E    A  AG++ + 
Sbjct: 334 VELHLHTNMSQMDATNSITDFVNRAKAWGHKAIAVTDHAGLQAYPEAHTAADKAGLKMLY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           G ++++            +         V+ 
Sbjct: 394 GVEINLVDDGTPVAYRAEEPRVLADAEYVVF 424


>gi|319937868|ref|ZP_08012268.1| hypothetical protein HMPREF9488_03104 [Coprobacillus sp. 29_1]
 gi|319806774|gb|EFW03413.1| hypothetical protein HMPREF9488_03104 [Coprobacillus sp. 29_1]
          Length = 454

 Score =  204 bits (519), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 115/462 (24%), Positives = 188/462 (40%), Gaps = 68/462 (14%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA----- 65
           F+HL V S +SL+ G   ++N+L+K A  +  A+AITD N + +  +F Q A        
Sbjct: 2   FIHLNVKSCFSLMNGFNKIDNVLEKTARMKSNAVAITDINTMHTFYDFEQAALKKTKKTK 61

Query: 66  -----GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
                 I PI G    +          + +       +I LL     GYQ LI L +   
Sbjct: 62  SLKRDSIHPIFGITFIV----------KARYVENEFFNITLLAKNEIGYQHLIALSTIAN 111

Query: 121 LL-DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
              +Q      +    L +   EGL  L+GG  G +      +    A   L   K  FG
Sbjct: 112 TNHEQFAY---LTFEDL-KHHGEGLFCLSGGEEGEVFDLVVNDRIDEAVMLLKDLKAFFG 167

Query: 180 DRLYVNLQRH--RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
           + LY+ +  H  +  +++ ES +++ A +  +  VATNN+ +L +ED +   + +++   
Sbjct: 168 ENLYLEVSNHFMKEEEKFIESGIIEKALSIGIDYVATNNAYYLRKEDAQYRSLAVSMNSE 227

Query: 238 TVVSQKDRPRVTPDHYLKNRSEMVSIF-----SDLPEALENTVEIARRCSFILQVHAPIL 292
               + +      ++  ++       +            +  ++        L++     
Sbjct: 228 LNSLKANEVDWIHNYASRHVDFNSEWYLKTEVEMTKAFSKYLLKYPNLLENTLKIANACQ 287

Query: 293 P-----RFIEKECDDIQKEEENELRNKAVAGLEVRLAQG-AIAKGYHAQDYRQRLDFELN 346
                 +   +        EE+  R   + G E R     A    +  QDY  R+++E  
Sbjct: 288 ATVPKLQTFPEFPLPQGYTEESYFRELMLKGFEERFPDDSAFDPRFTRQDYIDRMEYEFE 347

Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIP------------------------------VGP 376
            +  M F GY LIV D+I +AK   +                               VGP
Sbjct: 348 TVKEMGFLGYLLIVQDYINFAKDEKVFKHPERYFPRNCYPEYSRIPEGILKKNYKIAVGP 407

Query: 377 GRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDF 418
           GRGSGAGS+  Y L IT+++PL   LLFERFLN +R+SMP  
Sbjct: 408 GRGSGAGSLLCYLLKITNLEPLSLDLLFERFLNIERVSMPKL 449


>gi|75758946|ref|ZP_00739056.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228904735|ref|ZP_04068789.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
 gi|74493547|gb|EAO56653.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228854749|gb|EEM99353.1| DNA polymerase III alpha subunit [Bacillus thuringiensis IBL 4222]
          Length = 511

 Score =  204 bits (519), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 112/481 (23%), Positives = 189/481 (39%), Gaps = 93/481 (19%)

Query: 11  FVHLQVHS-SYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           F HL +H+   SLL+G   ++ ++         +I ++D    F+ ++F +K  AAGI P
Sbjct: 11  FAHLHLHTPEGSLLDGFCRIDPMIKLAQEFGMDSIGVSDHGTCFAHIQFYKKCKAAGIHP 70

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPT---------------------------------- 95
           ++G +  I  +   K  +  +  +                                    
Sbjct: 71  VLGMEGYIAPRKQWKKADFDRINYTDVAYRTKEELAKLESEGYIAFEKKQRDSFTKGKTT 130

Query: 96  -VPSIVLLV----STAEGYQRLIELVSRMYLLDQ--------GKQSVRICLSWLQEIGTE 142
               +  L          +  L +  +R YL  +         + S RI    +     E
Sbjct: 131 KPEHVEFLAKLNEKDPAAFDAL-KKSTRWYLSGKQDDKQKRLFEWSPRIAHLLMIAKNNE 189

Query: 143 G---LIMLT------------------------------GGSSGPIDRAFFFNSSQVAEK 169
           G   LI LT                                  G I +       +VA+ 
Sbjct: 190 GYKNLIKLTTIGSVEGFYGKPRFDYGDIKKYGKGIIATSSCLGGTIPQLIRRGKFRVAKN 249

Query: 170 RLLTFKKLFGDRLYVNLQRHRGYDR-YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
            +  +KK F D  Y+ +Q     ++    + +++ +   ++PLVAT+++  L  ED   H
Sbjct: 250 HIKFYKKCF-DEFYLEIQPSTMQEQILVNNILIEWSKELDVPLVATSDAHMLRPEDRPVH 308

Query: 229 DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             + ++       + D        +      +     +  EAL N   IA  C   L   
Sbjct: 309 KAITSINKGKDEDESDIDVYEHCVFYSAEEMLAMGMPE--EALINAYNIAHSCHVDLDES 366

Query: 289 APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG---AIAKGYHAQDYRQRLDFEL 345
           +   P F   +  D     ++ L + +  GL  ++A+G           + Y++RLD+EL
Sbjct: 367 SIKYPEFEVPDDFDF----DSYLAHISNKGLMEKIAEGNFVGKNFYKMYRKYKRRLDYEL 422

Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            VI     S Y LIV D+I +AK+N+I VGPGRGS AGS+ AY   IT++DP+R++LLFE
Sbjct: 423 EVIKNKNISAYMLIVWDYINFAKRNDILVGPGRGSAAGSLVAYVTGITNLDPIRYNLLFE 482

Query: 406 R 406
           R
Sbjct: 483 R 483


>gi|199597102|ref|ZP_03210534.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus
            rhamnosus HN001]
 gi|199591906|gb|EDY99980.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus
            rhamnosus HN001]
          Length = 1444

 Score =  204 bits (518), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 149/885 (16%), Positives = 285/885 (32%), Gaps = 172/885 (19%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                 ++   T  G + L +LVS   +     +  R+  S LQ++  EGL++ +  SSG 
Sbjct: 610  RPSHAIVFAKTQAGLKNLFKLVSLSNVK-YFYRVPRVPRSQLQKL-REGLLVGSACSSGE 667

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--------------HRGYDRYRESQV 200
            +  A        A  +   +        Y+ +Q                  + +    ++
Sbjct: 668  VFTAMMQKGEAEARAKAAFYD-------YLEIQPPAVYQPLLEADLIKGESHLKDILQKI 720

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
            V++    E P+V T +  +L + D     +L+                      +   + 
Sbjct: 721  VKIGDELEKPVVVTGDVHYLDQHDAIYRKILIHSQGGANPLNHHSLPDVHFRSTREMLDD 780

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
             S   +                +I     P+  +    E   +    E +L++  +A   
Sbjct: 781  FSWLGEEKAQQLVVTNSNLIADWIDDNITPVKDKLYTPEVPGV----EEKLKHDVMATAY 836

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                          +   QRLD EL  I    FS  + I    +  + K+   VG  RGS
Sbjct: 837  ELYGNPL------PEIVAQRLDKELKSIIGNGFSVIYNIAQRLVLKSNKDGYLVG-SRGS 889

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 890  VGSSLAATMAEITEVNPLPPHYRCPKCQYSEFFTHGEVGSGFDLPDKTCPKCGTELHKDG 949

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + FE FL      +PD D++F  D +     Y++  +G +   +  T G++  K A  
Sbjct: 950  HDIPFETFLGFHGDKVPDIDLNFSGDYQPVAHNYIKVMFGEDHSFRAGTIGTVADKTAYG 1009

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V +A +    Q  R  +                                 +  ++Q   
Sbjct: 1010 YV-KAYERDTGQQLRGAE---------------------------------IDRLAQGDT 1035

Query: 520  GLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGI+I   D  +    P+             T F+   I    ++K D L
Sbjct: 1036 GVKRTTGQHPAGILIVPADMDIYDFTPIQYPADDQNAAWMTTHFDFHSIHD-NILKMDVL 1094

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQAL 632
            G    T+++     + Q    V+   IP DD     L +   +LG+   Q+ S      +
Sbjct: 1095 GHDDPTMIR-----MLQDLSGVEPKSIPTDDPGVMALFSGTESLGVTPEQINSKMGTLGI 1149

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
                   +  ++      +P     ++  +   +G +  +     +      T   +I  
Sbjct: 1150 PEFGTRFVRGMLEET---KPTTFSELLQISGLSHGTDVWLGNAEELIKQGIVTLKEVIGC 1206

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
               + +  +  G   S A  +   + K      D     +     +N       ++    
Sbjct: 1207 RDNIMMDLIHWGMDDSMAFNIMEHVRKGRGIPDD-----WQKAMRENENVPDWYIDSCLK 1261

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------ 800
            +     Y F K+HA AY +++ + AW K HYP+ +  A  ++  ++ +            
Sbjct: 1262 I----KYMFPKAHATAYILMALRIAWFKVHYPLVYYTAYFSVRAEDFDLAAMSHGKEAVK 1317

Query: 801  ---------------------KIKKFCQDARQFNIQIMPPSVNTP-CVDFKV-GDNRIYY 837
                                  + +   +  +   +I    V      DF +  D+ I  
Sbjct: 1318 AAMKEITDKGMDASAKEKQLLTVLEIANECLERGFKIKMIDVTKSDSHDFLIQDDHTILA 1377

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
               A+ G+G   A+ I+ A  +KPF S ED  +R    K+++ ++
Sbjct: 1378 PFRAVPGLGDNVAKQIVAAREEKPFLSKEDLANR---GKVSKTLI 1419



 Score = 88.7 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 39/91 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++   S+ + +++  A    AIA+TD   L +  E    A  AG++ + 
Sbjct: 334 VELHLHTNMSQMDATNSITDFVNRAKAWGHKAIAVTDHAGLQAYPEAHTAAAKAGLKMLY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           G ++++            +         V+ 
Sbjct: 394 GVEINLVDDGTPVAYRADEPRVLADAEYVVF 424


>gi|262046916|ref|ZP_06019876.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US]
 gi|260572898|gb|EEX29458.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus MV-3A-US]
          Length = 1436

 Score =  204 bits (518), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 137/886 (15%), Positives = 277/886 (31%), Gaps = 195/886 (22%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                + +L     G + L +LVS     D   +  R   S L  +  +GL+  +G   G 
Sbjct: 608  RPSHMTVLAKDQAGLKNLYKLVSIASTKD-FFRIPRTPKSDLARLH-DGLLYGSGCWQGD 665

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ----------RHRGYDRYRESQVVQ-- 202
            +  A        A ++   +        Y+ +Q               D  +  ++++  
Sbjct: 666  VFIAMMQKGYDEAREKAKFYD-------YLEVQPPATYSQLIADGLIKDEDQLHEIIENI 718

Query: 203  --LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
              L      P+VAT+++ ++ ++D     +L+A   S     K +P +      +     
Sbjct: 719  IKLGKELNKPVVATSDAHYVDQKDAIYRKILIAAQRSNPSRNKPQPDLHFYSTQEMLDAF 778

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
              +  D+  A +  ++   + +  L    PI         +      + E++        
Sbjct: 779  SFLGEDV--AKKIVIDNTNKIADELSEIQPIKDGLYPPHIEH----ADEEMKKLTYDKAY 832

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                +         +  + R+D ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 833  ELYGKPL------PKIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 885

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 886  VGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFENGEYGSGFDLPDKDCPKCGTPLVKDG 945

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + F  FL      +PD D++F  D +     +++  +G +   +  T  ++  K A  
Sbjct: 946  QDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPDNSYRAGTIATVADKTAYG 1005

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                                          +   ++   +           L  ++  + 
Sbjct: 1006 YA----------------------------KHYDEEHDLKLRNAE------LDRLAAGVR 1031

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGIV+      +    P+            +T ++   I    ++KFD L
Sbjct: 1032 GVKRTTGQHPAGIVVVPDDMDIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDIL 1090

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGI 620
            G    T+++       Q    +D   IP DD     L ++                TLG+
Sbjct: 1091 GHDDPTMIRH-----LQDLSGIDPLTIPPDDPGVMSLFSSPDILGVTPEQIQSETGTLGV 1145

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +R  LE  +P    +++ +  L                N ++ I      +  
Sbjct: 1146 PEFGTRFVRGMLEETKPTTFSELLQISGLSHG-------TDVWLGNAEDLINQGICKLKN 1198

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            ++     ++        +  +  G     A     ++        +       +    + 
Sbjct: 1199 VIGCRDNIM--------MDLIHWGVKPEVAFSTMESVRHGRGISDENMAILKKNKNIPDW 1250

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
               +              Y F K+HA AY +++ + AW K +YP  +  A  ++  D  +
Sbjct: 1251 YIPSCLKI---------KYMFPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLFD 1301

Query: 801  KIKK---------------------------------FCQDARQFNIQIMPPSVNTPCV- 826
             +                                      +  +  I+I    ++     
Sbjct: 1302 LVAMSHGKNTVKAAMKEIQDKGNDASAKDKSLMTVLEIANECLERGIKIKMVDIDQSEAT 1361

Query: 827  DFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            DFK+   + I     A+ G+G   A+ I+ A A+K F S ED   R
Sbjct: 1362 DFKILDKHTILAPFNAVPGLGDNAAKQIVAARAEKKFLSKEDLAKR 1407



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH++ S ++   +  + +       Q AIAITD  ++ S  E      A  ++ + 
Sbjct: 333 VELHVHTNMSQVDATNTPTDFIKTAKKFGQKAIAITDHGDVQSFPEAYSSGKALDMKILY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 393 GVEANMIDDHALLVLNPAPMTYKDREFVIF 422


>gi|256849838|ref|ZP_05555269.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
 gi|256713327|gb|EEU28317.1| DNA polymerase [Lactobacillus crispatus MV-1A-US]
          Length = 1436

 Score =  204 bits (518), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 137/886 (15%), Positives = 277/886 (31%), Gaps = 195/886 (22%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                + +L     G + L +LVS     D   +  R   S L  +  +GL+  +G   G 
Sbjct: 608  RPSHMTVLAKDQAGLKNLYKLVSIASTKD-FFRIPRTPKSDLARLH-DGLLYGSGCWQGD 665

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ----------RHRGYDRYRESQVVQ-- 202
            +  A        A ++   +        Y+ +Q               D  +  ++++  
Sbjct: 666  VFIAMMQKGYDEAREKAKFYD-------YLEVQPPATYSQLIADGLIKDEDQLHEIIENI 718

Query: 203  --LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
              L      P+VAT+++ ++ ++D     +L+A   S     K +P +      +     
Sbjct: 719  IKLGKELNKPVVATSDAHYVDQKDAIYRKILIAAQRSNPSRNKPQPDLHFYSTQEMLDAF 778

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
              +  D+  A +  ++   + +  L    PI         +      + E++        
Sbjct: 779  SFLGEDV--AKKIVIDNTNKIADELSEIQPIKDGLYPPHIEH----ADEEMKKLTYDKAY 832

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                +         +  + R+D ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 833  ELYGKPL------PKIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 885

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 886  VGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFENGEYGSGFDLPDKDCPKCGTPLVKDG 945

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + F  FL      +PD D++F  D +     +++  +G +   +  T  ++  K A  
Sbjct: 946  QDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPDNSYRAGTIATVADKTAYG 1005

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                                          +   ++   +           L  ++  + 
Sbjct: 1006 YA----------------------------KHYDEEHDLKLRNAE------LDRLAAGVR 1031

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGIV+      +    P+            +T ++   I    ++KFD L
Sbjct: 1032 GVKRTTGQHPAGIVVVPDDMDIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDIL 1090

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGI 620
            G    T+++       Q    +D   IP DD     L ++                TLG+
Sbjct: 1091 GHDDPTMIRH-----LQDLSGIDPLTIPPDDPGVMSLFSSPDILGVTPEQIQSETGTLGV 1145

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +R  LE  +P    +++ +  L                N ++ I      +  
Sbjct: 1146 PEFGTRFVRGMLEETKPTTFSELLQISGLSHG-------TDVWLGNAEDLINQGICKLKN 1198

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            ++     ++        +  +  G     A     ++        +       +    + 
Sbjct: 1199 VIGCRDNIM--------MDLIHWGVKPEVAFSTMESVRHGRGISDENMAILKKNKNIPDW 1250

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
               +              Y F K+HA AY +++ + AW K +YP  +  A  ++  D  +
Sbjct: 1251 YIPSCLKI---------KYMFPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLFD 1301

Query: 801  KIKK---------------------------------FCQDARQFNIQIMPPSVNTPCV- 826
             +                                      +  +  I+I    ++     
Sbjct: 1302 LVAMSHGKNTVKAAMKEIQDKGNDASAKDKSLMTVLEIANECLERGIKIKMVDIDQSEAT 1361

Query: 827  DFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            DFK+   + I     A+ G+G   A+ I+ A A+K F S ED   R
Sbjct: 1362 DFKILDKHTILAPFNAVPGLGDNAAKQIVAARAEKKFLSKEDLAKR 1407



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH++ S ++   +  + +       Q AIAITD  ++ S  E      A  ++ + 
Sbjct: 333 VELHVHTNMSQVDATNTPTDFIKTAKKFGQKAIAITDHGDVQSFPEAYSSGKALDMKILY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 393 GVEANMIDDHALLVLNPAPMTYEGREFVIF 422


>gi|256843343|ref|ZP_05548831.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN]
 gi|293381212|ref|ZP_06627220.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            crispatus 214-1]
 gi|256614763|gb|EEU19964.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus 125-2-CHN]
 gi|290922252|gb|EFD99246.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            crispatus 214-1]
          Length = 1436

 Score =  204 bits (518), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 137/886 (15%), Positives = 277/886 (31%), Gaps = 195/886 (22%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                + +L     G + L +LVS     D   +  R   S L  +  +GL+  +G   G 
Sbjct: 608  RPSHMTVLAKDQAGLKNLYKLVSIASTKD-FFRIPRTPKSDLARLH-DGLLYGSGCWQGD 665

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ----------RHRGYDRYRESQVVQ-- 202
            +  A        A ++   +        Y+ +Q               D  +  ++++  
Sbjct: 666  VFIAMMQKGYDEAREKAKFYD-------YLEVQPPATYSQLIADGLIKDEDQLHEIIENI 718

Query: 203  --LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
              L      P+VAT+++ ++ ++D     +L+A   S     K +P +      +     
Sbjct: 719  IKLGKELNKPVVATSDAHYVDQKDAIYRKILIAAQRSNPSRNKPQPDLHFYSTQEMLDAF 778

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
              +  D+  A +  ++   + +  L    PI         +      + E++        
Sbjct: 779  SFLGEDV--AKKIVIDNTNKIADELSEIQPIKDGLYPPHIEH----ADEEMKKLTYDKAY 832

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                +         +  + R+D ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 833  ELYGKPL------PKIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 885

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 886  VGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFENGEYGSGFDLPDKDCPKCGTPLVKDG 945

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + F  FL      +PD D++F  D +     +++  +G +   +  T  ++  K A  
Sbjct: 946  QDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPDNSYRAGTIATVADKTAYG 1005

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                                          +   ++   +           L  ++  + 
Sbjct: 1006 YA----------------------------KHYDEEHDLKLRNAE------LDRLAAGVR 1031

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGIV+      +    P+            +T ++   I    ++KFD L
Sbjct: 1032 GVKRTTGQHPAGIVVVPDDMDIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDIL 1090

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGI 620
            G    T+++       Q    +D   IP DD     L ++                TLG+
Sbjct: 1091 GHDDPTMIRH-----LQDLSGIDPLTIPPDDPGVMSLFSSPDILGVTPEQIQSETGTLGV 1145

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +R  LE  +P    +++ +  L                N ++ I      +  
Sbjct: 1146 PEFGTRFVRGMLEETKPTTFSELLQISGLSHG-------TDVWLGNAEDLINQGICKLKN 1198

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            ++     ++        +  +  G     A     ++        +       +    + 
Sbjct: 1199 VIGCRDNIM--------MDLIHWGVKPEVAFSTMESVRHGRGISDENMAILKKNKNIPDW 1250

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
               +              Y F K+HA AY +++ + AW K +YP  +  A  ++  D  +
Sbjct: 1251 YIPSCLKI---------KYMFPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLFD 1301

Query: 801  KIKK---------------------------------FCQDARQFNIQIMPPSVNTPCV- 826
             +                                      +  +  I+I    ++     
Sbjct: 1302 LVAMSHGKNTVKAAMKEIQDKGNDASAKDKSLMTVLEIANECLERGIKIKMVDIDQSEAT 1361

Query: 827  DFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            DFK+   + I     A+ G+G   A+ I+ A A+K F S ED   R
Sbjct: 1362 DFKILDKHTILAPFNAVPGLGDNAAKQIVAARAEKKFLSKEDLAKR 1407



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH++ S ++   +  + +       Q AIAITD  ++ S  E      A  ++ + 
Sbjct: 333 VELHVHTNMSQVDATNTPTDFIKTAKKFGQKAIAITDHGDVQSFPEAYSSGKALDMKILY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 393 GVEANMIDDHALLVLNPAPMTYEDREFVIF 422


>gi|227878821|ref|ZP_03996728.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|227861569|gb|EEJ69181.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
          Length = 1436

 Score =  204 bits (518), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 137/886 (15%), Positives = 277/886 (31%), Gaps = 195/886 (22%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                + +L     G + L +LVS     D   +  R   S L  +  +GL+  +G   G 
Sbjct: 608  RPSHMTVLAKDQAGLKNLYKLVSIASTKD-FFRIPRTPKSDLARLH-DGLLYGSGCWQGD 665

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ----------RHRGYDRYRESQVVQ-- 202
            +  A        A ++   +        Y+ +Q               D  +  ++++  
Sbjct: 666  VFIAMMQKGYDEAREKAKFYD-------YLEVQPPATYSQLIADGLIKDEDQLHEIIENI 718

Query: 203  --LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
              L      P+VAT+++ ++ ++D     +L+A   S     K +P +      +     
Sbjct: 719  IKLGKELNKPVVATSDAHYVDQKDAIYRKILIAAQRSNPSRNKPQPDLHFYSTQEMLDAF 778

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
              +  D+  A +  ++   + +  L    PI         +      + E++        
Sbjct: 779  SFLGEDV--AKKIVIDNTNKIADELSEIQPIKDGLYPPHIEH----ADEEMKKLTYDKAY 832

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                +         +  + R+D ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 833  ELYGKPL------PKIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 885

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 886  VGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFENGEYGSGFDLPDKDCPKCGTPLVKDG 945

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + F  FL      +PD D++F  D +     +++  +G +   +  T  ++  K A  
Sbjct: 946  QDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPDNSYRAGTIATVADKTAYG 1005

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                                          +   ++   +           L  ++  + 
Sbjct: 1006 YA----------------------------KHYDEEHDLKLRNAE------LDRLAAGVR 1031

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGIV+      +    P+            +T ++   I    ++KFD L
Sbjct: 1032 GVKRTTGQHPAGIVVVPDDMDIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDIL 1090

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGI 620
            G    T+++       Q    +D   IP DD     L ++                TLG+
Sbjct: 1091 GHDDPTMIRH-----LQDLSGIDPLTIPPDDPGVMSLFSSPDILGVTPEQIQSETGTLGV 1145

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +R  LE  +P    +++ +  L                N ++ I      +  
Sbjct: 1146 PEFGTRFVRGMLEETKPTTFSELLQISGLSHG-------TDVWLGNAEDLINQGICKLKN 1198

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            ++     ++        +  +  G     A     ++        +       +    + 
Sbjct: 1199 VIGCRDNIM--------MDLIHWGVKPEVAFSTMESVRHGRGISDENMAILKKNKNIPDW 1250

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
               +              Y F K+HA AY +++ + AW K +YP  +  A  ++  D  +
Sbjct: 1251 YIPSCLKI---------KYMFPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLFD 1301

Query: 801  KIKK---------------------------------FCQDARQFNIQIMPPSVNTPCV- 826
             +                                      +  +  I+I    ++     
Sbjct: 1302 LVAMSHGKNTVKAAMKEIQDKGNDASAKDKSLMTVLEIANECLERGIKIKMVDIDQSEAT 1361

Query: 827  DFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            DFK+   + I     A+ G+G   A+ I+ A A+K F S ED   R
Sbjct: 1362 DFKILDKHTILAPFNAVPGLGDNAAKQIVAARAEKKFLSKEDLAKR 1407



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH++ S ++   +  + +       Q AIAITD  ++ S  E      A  ++ + 
Sbjct: 333 VELHVHTNMSQVDATNTPTDFIKTAKKFGQKAIAITDHGDVQSFPEAYSSGKALDMKILY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 393 GVEANMIDDHALLVLNPAPMTYEGREFVIF 422


>gi|227529104|ref|ZP_03959153.1| DNA polymerase III PolC [Lactobacillus vaginalis ATCC 49540]
 gi|227350948|gb|EEJ41239.1| DNA polymerase III PolC [Lactobacillus vaginalis ATCC 49540]
          Length = 1442

 Score =  204 bits (518), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 148/928 (15%), Positives = 291/928 (31%), Gaps = 180/928 (19%)

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               GI+ I           N  MT+           + +L  T  G + L +LVS   + 
Sbjct: 590  KRYGIKLI--------SDLNKHMTDNDAYRHARPFHVTILAQTQAGLKNLYKLVSLSNVK 641

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                +  RI  S L +   +GL++ T  SSG +  A        AE++   +        
Sbjct: 642  -YFARVPRIPRSVLTKF-RQGLLLGTACSSGEVFTAMMEKGFAEAERKAKYYD------- 692

Query: 183  YVNLQR--------------HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
            ++ +Q                  +       +V+L    + P+VAT +  +L   D    
Sbjct: 693  FIEVQPKPNYQPLLEQKVIADDAHLEDILKNMVKLGENLKKPVVATGDVHYLDAHDAIYR 752

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             +L+        +  +R R    H+      +        +     V         +   
Sbjct: 753  KILINSQGG--ANPLNRTRRPDVHFRTTDEMLNEFSFLGADKAHQIVVTNTHQVADMIDD 810

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                 +  +K      K  E E++++     +              +  + R+D ELN I
Sbjct: 811  GICPVK--DKLYTPHMKGAEQEIQDRTWDTAKKWYGDPL------PKIVQDRVDLELNSI 862

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
             +  FS  +LI    +  + K+   VG  RGS   SV A    IT+++PL          
Sbjct: 863  VKNGFSVIYLIAQRLVAKSNKDGYLVG-SRGSVGSSVVATLSGITEVNPLPPHYRCPKCH 921

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + F+ FL      +PD D++F  D +
Sbjct: 922  YSHFYTKGEYSSGFDLPEKKCPKCGTLLVKDGHDIPFQTFLGFKGNKVPDIDLNFSGDYQ 981

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 Y++  +G + V +  T G++  K A   V    +                     
Sbjct: 982  PIAHNYMKVLFGEKNVFRAGTIGTVADKTAYGYVKAYERD------------------TD 1023

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPM 545
                 A++ R                 S    G+ R    H AGI+I      +    P+
Sbjct: 1024 KQFRGAEEDRL----------------SHGATGVKRTTGQHPAGIIIVPDDMEIYDFTPV 1067

Query: 546  YRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    ++K D LG    T+++       Q    VD   IP
Sbjct: 1068 QYPADDQEAAWETTHFDFHSIHD-NILKMDILGHDDPTMIR-----ALQDLSGVDPQTIP 1121

Query: 603  FDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
             +D     L ++   LG+   Q++S      L       +  +   +    P     ++ 
Sbjct: 1122 MNDPGVMSLFSSPEALGVSEEQIQSKTGTLGLPEFGTRFVRGM---LEDTHPKNYSQLLQ 1178

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
             +   +G    +     +      T   +I     +    +  G     +  +  ++   
Sbjct: 1179 ISGLSHGTGVWLDNAQELIKQGVATIANVIGCRDNIMTDLIHYGLDSETSFQVMESVRHG 1238

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                 D     +     +  + +    +  ++      Y F ++HAAAY +++ + A+ K
Sbjct: 1239 RGIPDD-----WQKKMREANVPQWYMDSCLKI-----KYMFPRAHAAAYVLMALRIAYFK 1288

Query: 781  THYPVEFLAASMTLEMDNVEKIKK---------------------------------FCQ 807
             ++P+ +  A  ++  D+ + +                                      
Sbjct: 1289 VYFPLVYYCAFFSVRADDFDVVAMSHGKDAVKTRMKEINSQGNDASAKDKSLLTILELAN 1348

Query: 808  DARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
            +  +   +     +      ++ +  N +     A+ G+G   A+ I+ A  +K F S +
Sbjct: 1349 EMLERGFKFKMVDLERSDASNWLIDGNTLIAPFRAVPGLGLNVAKQIVAAREEKKFLSKQ 1408

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCF 894
            D   R    K+++ +++ L     LD  
Sbjct: 1409 DLAER---GKVSQTIIDFLTQNHVLDGL 1433



 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 42/90 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L  HS  S ++   S+  + ++  +  QPAIAITD  ++ +  E  + A   GI+ + 
Sbjct: 339 IELHAHSEMSQMDATNSITELANRAHSWGQPAIAITDHADVQAFPEAFKAAKKTGIKMLY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       + N+  TP      ++ 
Sbjct: 399 GVEANVVDDGIPLVYNENDTPLDGQTYVIF 428


>gi|295693139|ref|YP_003601749.1| DNA polymerase iii, alpha subunit [Lactobacillus crispatus ST1]
 gi|295031245|emb|CBL50724.1| DNA polymerase III, alpha subunit [Lactobacillus crispatus ST1]
          Length = 1436

 Score =  204 bits (518), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 138/886 (15%), Positives = 277/886 (31%), Gaps = 195/886 (22%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                + +L     G + L +LVS     D   +  R   S L  +  +GL+  +G   G 
Sbjct: 608  RPSHMTVLAKDQAGLKNLYKLVSIASTKD-FFRIPRTPKSDLARLH-DGLLYGSGCWQGD 665

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ----------RHRGYDRYRESQVVQ-- 202
            +  A        A ++   +        Y+ +Q               D  +  ++++  
Sbjct: 666  VFIAMMQKGYDEAREKAKFYD-------YLEVQPPATYSQLIADGLIKDEDQLHEIIENI 718

Query: 203  --LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
              L      P+VAT+++ ++ ++D     +L+A   S     K +P +      +     
Sbjct: 719  IKLGKELNKPVVATSDAHYVDQKDAIYRKILIAAQRSNPSRNKPQPDLHFYSTQEMLDAF 778

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
              +  D+  A E  ++   + +  L    PI         +      + E++        
Sbjct: 779  SFLGEDV--AKEIVIDNTNKIADELSEIQPIKDGLYPPHIEH----ADEEMKKLTYDKAY 832

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                +         +  + R+D ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 833  ELYGKPL------PKIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 885

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 886  VGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFENGEYGSGFDLPDKDCPKCGTPLVKDG 945

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + F  FL      +PD D++F  D +     +++  +G +   +  T  ++  K A  
Sbjct: 946  QDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPDNSYRAGTIATVADKTAYG 1005

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                                          +   ++   +           L  ++  + 
Sbjct: 1006 YA----------------------------KHYDEEHDLKLRNAE------LDRLAAGVR 1031

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGIV+      +    P+            +T ++   I    ++KFD L
Sbjct: 1032 GVKRTTGQHPAGIVVVPDDMDIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDIL 1090

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGI 620
            G    T+++       Q    +D   IP DD     L ++                TLG+
Sbjct: 1091 GHDDPTMIRH-----LQDLSGIDPLTIPPDDPGVMSLFSSPDILGVTPEQIQSETGTLGV 1145

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +R  LE  +P    +++ +  L                N ++ I      +  
Sbjct: 1146 PEFGTRFVRGMLEETKPTTFSELLQISGLSHG-------TDVWLGNAEDLINQGICKLKN 1198

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            ++     ++        +  +  G     A     ++        +       +    + 
Sbjct: 1199 VIGCRDNIM--------MDLIHWGVKPEVAFSTMESVRHGRGISDENMAILKKNKNIPDW 1250

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
               +              Y F K+HA AY +++ + AW K +YP  +  A  ++  D  +
Sbjct: 1251 YIPSCLKI---------KYMFPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLFD 1301

Query: 801  KIKK---------------------------------FCQDARQFNIQIMPPSVNTPCV- 826
             +                                      +  +  I+I    ++     
Sbjct: 1302 LVAMSHGKNTVKAAMKEIQDKGNDASAKDKSLMTVLEIANECLERGIKIKMVDIDQSEAT 1361

Query: 827  DFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            DFK+   + I     A+ G+G   A+ I+ A A+K F S ED   R
Sbjct: 1362 DFKILDKHTILAPFNAVPGLGDNAAKQIVAARAEKKFLSKEDLAKR 1407



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH++ S ++   +  + +       Q AIAITD  ++ S  E      A  ++ + 
Sbjct: 333 VELHVHTNMSQVDATNTPTDFIKTAKKFGQKAIAITDHGDVQSFPEAYSSGKALDMKILY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 393 GVEANMIDDHALLVLNPAPMTYEDREFVIF 422


>gi|222099186|ref|YP_002533754.1| DNA polymerase III subunit alpha [Thermotoga neapolitana DSM 4359]
 gi|221571576|gb|ACM22388.1| DNA polymerase III subunit alpha [Thermotoga neapolitana DSM 4359]
          Length = 831

 Score =  204 bits (518), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 190/647 (29%), Positives = 306/647 (47%), Gaps = 96/647 (14%)

Query: 319 LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
            E              + Y +RL+ EL  I +  FS Y  +V + ++ A+K  I VGPGR
Sbjct: 159 PENWYRNLRERASRMGEKYLERLERELETIEKKGFSSYIYLVEEIVKTARKLGIKVGPGR 218

Query: 379 GSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
           GS  GS+  +   IT+IDPL+  LLFERF+N +R+  PD D+D    RR E+++ +  ++
Sbjct: 219 GSAVGSLVVFLCGITEIDPLKHDLLFERFINEERIEPPDIDVDVEDRRRKELLKELSKRF 278

Query: 439 GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
               V Q+ TFG+L  ++    +G   +  Y                             
Sbjct: 279 ---YVYQVSTFGNLAERSLKNLIGSTSRRMYEI--------------------------- 308

Query: 499 REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
                              L GL  H S HAAG+VI +RPL    P+   +  ++PVT +
Sbjct: 309 -------------------LYGLPHHPSVHAAGVVISERPL----PIPFRLEEEIPVTDY 345

Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
           +M  +++ G++K D LGLKTL+ ++                   + D +TYH+++   TL
Sbjct: 346 DMYDLDRIGVVKIDILGLKTLSFVKDFNR-----------KTFDYSDEKTYHIISKGKTL 394

Query: 619 GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
           G+FQLE    R+    + P  +E++  L++L RPGP+ + +      +           +
Sbjct: 395 GVFQLEGLQARRLCRKISPGNLEELSVLLALNRPGPLKSGIDSMYVSSKSVP-----ESL 449

Query: 679 DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
             +  ET+GV+IYQEQ+     +L+G S +EADVLRRA+ KK KE+M+   ER   G  +
Sbjct: 450 KKLFPETRGVVIYQEQI-MNLAMLAGLSGAEADVLRRAIAKKEKEKMEPLLERLKEGLVE 508

Query: 739 NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            G+       I ++L  F+ Y FNKSH+ AYA +S+QTA++K H+  EF        + +
Sbjct: 509 KGV--EDVDLILKILLNFSSYAFNKSHSVAYAHLSFQTAYLKVHFFEEFFKRYFEYNIGD 566

Query: 799 VEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA 858
            EK+    Q+ R    ++ PP+VN         +N++Y  L A+KGVG +    I     
Sbjct: 567 SEKVFLAVQELRSEGYEVFPPNVNVSGKYPVFRENKVYLPLTAVKGVGESMVEEI---EK 623

Query: 859 DKPFDSLEDFCSRV-DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
           ++P DS+     R+ + + + R VLE+++ AGA D    SR Q  + L+          +
Sbjct: 624 NRPIDSV----RRLQEVRGIPRNVLENMISAGAFDELYESRAQAFEELNRKVDSDILKIR 679

Query: 918 NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
                   +F            +E+ S    +   E E++ LGF  +
Sbjct: 680 E-------LFGE---------KIEQKSGVKPADLCELEEKSLGFPLT 710



 Score = 43.2 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 49/165 (29%), Gaps = 51/165 (30%)

Query: 18  SSYSLLEG-ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
           S YS  +G  +    ++  +      +  + D  N  +A++F+      G+ P+ G    
Sbjct: 7   SPYSF-DGSVVRFEKLVSVLKKRGLKSALLADR-NFHAAVKFNTIMREHGLIPVHG---- 60

Query: 77  IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
           +  +D                  V +      Y  L+                ++ +  L
Sbjct: 61  LWWKDR-----------------VFIARNRREYDLLVR----------FYNGEKVNVDEL 93

Query: 137 QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL--TFKKLFG 179
               TE L+                     AE++      +K+FG
Sbjct: 94  PSFKTEELV---------------PVRYLEAEEKAASLFMRKIFG 123


>gi|294783112|ref|ZP_06748436.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium
            sp. 1_1_41FAA]
 gi|294479990|gb|EFG27767.1| DNA polymerase III, alpha subunit, Gram-positive type [Fusobacterium
            sp. 1_1_41FAA]
          Length = 1449

 Score =  204 bits (518), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 154/902 (17%), Positives = 300/902 (33%), Gaps = 181/902 (20%)

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS-----GPIDR 157
            V T EG + + +LVS+ ++   G +  RI  S L+E   EGLI+ +  S+     G +  
Sbjct: 616  VKTQEGLKNMYKLVSKGHIKYFGNKKARIPKSVLKE-NREGLIVGSSLSAHFMNSGELVE 674

Query: 158  AFFFNSSQVAEKRLLTF--KKLFGDRLYVNLQRHRGYD--------RYRESQVVQLAYTH 207
             +  +  +  E+    +   +L     Y  L    G                   L    
Sbjct: 675  LYLRHDLEKLEETAKFYDYIELLPKSTYNELIEKEGTGSLVSYDDVEKMNKYFYDLGKRL 734

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
             + + A++N  +L E +     +L+  + +     + R          +       +   
Sbjct: 735  GILVTASSNVHYLDENEDIIRSILLFGSGTVYSPNQYRVNNGFYFRTTDEMLKEFSYLGE 794

Query: 268  PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
             EA E  +    + + +++     +P        D     E  +R               
Sbjct: 795  QEAKEVIITNTNKIADMVEEGIKPIPEGFYPPKMD---NAEEIVRTMTYEKAYRIYGDPL 851

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
                        RL+ ELN I    FS  +L     ++ +  N   VG  RGS   S+ A
Sbjct: 852  ------PNIVSARLERELNAIINNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGSSLVA 904

Query: 388  YALTITDIDPLR-----------------------------------------FSLLFER 406
            + + IT+++ L                                          +S+ FE 
Sbjct: 905  FMMGITEVNALYPHYICDNPECKHSEFIEKEGVGIDLPDKICPNCGAPLRKDGYSIPFEV 964

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            F+      +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V +   
Sbjct: 965  FMGFKGDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAEAYVIK--- 1021

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
                                       + +    A+     + RL + ++K         
Sbjct: 1022 -------------------------YFEKNNLEAAKAEIVRLGRLCQGAKKTT------G 1050

Query: 527  THAAGIVIGDR--PLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             H  G+VI  +   + +  P+ R    +      T ++   +++  L+K D LG    T 
Sbjct: 1051 QHPGGMVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDE-QLVKLDILGHDDPTT 1109

Query: 582  LQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQLESSG 627
            ++     L Q    +++  IP  D +T  + ++                T GI +  +  
Sbjct: 1110 IK-----LLQEYTNMEIKDIPLADKDTLKIFSSTESLGVSPEEIGTEIGTYGIPEFGTGF 1164

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            +RQ L   +P    +++ +  L   G    +                        + T  
Sbjct: 1165 VRQMLIDTRPTTFAELVRISGLSH-GTNVWLNNAQEFVRN--------------GQATLS 1209

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
             II     +    +  G   S+A  +   + K   ++  +  E + +   +  +      
Sbjct: 1210 QIITVRDDIMNYLIDQGLDNSDAFKIMEFVRKGKPKKEPENWENYSNMMKEKNVPDWYIE 1269

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK------ 801
            +   +     +Y F K HA AY +++ + A+ K H P+ F AA ++ + D+ +       
Sbjct: 1270 SCRRI-----EYMFPKGHAVAYVMMAMRIAYFKVHQPLAFYAAFLSRKADDFDMEVMSKG 1324

Query: 802  -------------------------IKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRI 835
                                     I +   +     I+++P  +       FK+ D +I
Sbjct: 1325 VLAKQKLEELSKESKLDPKKKNEQAICEIVVELEARGIELLPVDIYLSEGRKFKIEDGKI 1384

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L  I G+G     +I++   +  F S+ED   R    K+++ V   L   GA     
Sbjct: 1385 RIPLIGISGLGGAVIENILKEREETKFISVEDLKRRT---KMSQTVANKLKSIGAFSSLS 1441

Query: 896  YS 897
             +
Sbjct: 1442 ET 1443



 Score = 78.3 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
           V L  H+  S + G   + +++ +       AIAITD + + S     +           
Sbjct: 331 VELHTHTKMSEMVGVTDVEDLIKRAKEYGHKAIAITDYSVVHSYPAAYKTGKKLSKDDNK 390

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           ++ I GC++ +   + L +TN           +V 
Sbjct: 391 MKVIFGCEMYMIDDEALMITNPKDKKIDEEEFVVF 425


>gi|160944143|ref|ZP_02091373.1| hypothetical protein FAEPRAM212_01645 [Faecalibacterium prausnitzii
            M21/2]
 gi|158444819|gb|EDP21823.1| hypothetical protein FAEPRAM212_01645 [Faecalibacterium prausnitzii
            M21/2]
          Length = 1417

 Score =  204 bits (518), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 144/915 (15%), Positives = 299/915 (32%), Gaps = 164/915 (17%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++    + N  +    +        +++LV    G + L ++VS  + ++   +  R+  
Sbjct: 564  EVTKVSEINTGLGGNREVLKKKYYHLIILVKNQMGLKNLYKIVSEAH-VNYFFKKPRVPR 622

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-----GDRLYVNLQR 188
            S L +   +GL++ +   +G + RA    +S    K++  +  +      G+  Y+   R
Sbjct: 623  SLLNKY-RDGLLLTSACEAGELYRAIVDGTSYEELKKIAAYYDILEIQPLGNNAYM--VR 679

Query: 189  HRGYD-----RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
                D     +     V++L      P++AT +  F   ED   +  ++   +    +  
Sbjct: 680  DGKVDSEERIKEFNRTVIKLGEDLHKPVIATGDVHFTEPEDAI-YRAVLQAGNGFKDADN 738

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              P                      +A E  V+  R+ + ++  +   +PR         
Sbjct: 739  QPPLFFRTTQDMLAQFYYLPKE---KAYEVVVKNPRKIAAMIDNNVRAIPRGTYP---PS 792

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +  E +LR+      +              +   +RL  EL+ I    ++  ++I    
Sbjct: 793  IEGAEQQLRDATWEHAKRDYGDPL------PEIVEKRLQKELDSICGHGYAVLYVIAVKL 846

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------ 399
            + ++      VG  RGS   S  A+   I++++ L                         
Sbjct: 847  VAYSNAGGYQVG-SRGSVGSSAVAHFSGISEVNSLPPHYRCPKCKHSEFITDGSVDDGFD 905

Query: 400  -----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
                               + FE FL       PD D++F  + +  V RY +  +G   
Sbjct: 906  LPDKNCPHCGTRMLVDGHDIPFETFLGFYGDKEPDIDLNFSGEYQSNVHRYTEELFGKAN 965

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            V +  T   +Q K A   V + L      V+                   A+++R     
Sbjct: 966  VFKAGTVSGIQDKTAYGYVKKYLDERQRTVNH------------------AEENRL---- 1003

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQ 557
                        +    G+ R    H  G+V+      +    P+          L  T 
Sbjct: 1004 ------------TLGCTGVKRTTGQHPGGMVVVPDTYEIYDFCPIQHPADDVAGGLLTTH 1051

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGT 617
            F  K++    L+K D LG    T  +       +    + +  IP +D + Y LLT+   
Sbjct: 1052 FEFKYLHDT-LLKLDELGHDMPTFYKYF-----EEYTGIPVDSIPMNDPKVYSLLTSPEA 1105

Query: 618  LGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
            LG+   Q++S      +  M  + +  +   +   RP     ++  +   +G +      
Sbjct: 1106 LGVTPEQIDSQTGTFGIPEMGTNFVRGM---LVEARPKNFSELIQISGLSHGTDVWTGNA 1162

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
              +      T   +I     + +  L  G     A  +  A+ K  K      +  +   
Sbjct: 1163 DELIRSGTCTIAEVIGCRDSIMLYLLRKGLEPKMAFDIMEAVRKG-KVAKGGFQPGWEEA 1221

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              ++ +      +  ++      Y F K+HA AY + + +  W K + P  F A   T+ 
Sbjct: 1222 MREHEVPDWYIESCRKI-----KYMFPKAHAVAYLMSAIRLMWYKIYKPQAFYAVYFTVR 1276

Query: 796  MDNVEK----------------------------------IKKFCQDARQFNIQIMPPSV 821
             D+++                                     +   +      + +P  +
Sbjct: 1277 GDDIDYEAAIGGAAVARAHMEAVKRRLKEEKNAKDEDVLVSLQLVNEMLSRGYEFLPIEL 1336

Query: 822  NTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNR 879
                   + V D+++    +A+KG+G   A  +   +     + S+E+      +  +  
Sbjct: 1337 GKSLGSKYVVEDDKVRLPFSALKGLGGAAADALERVTIHGEEYISVEELQQ---ASGVGS 1393

Query: 880  RVLESLVFAGALDCF 894
             +L+ L   GAL   
Sbjct: 1394 SILDRLRQVGALGDL 1408



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 5/93 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-----CAAG 66
           V L +H+  S ++G      I+        PAIAITD        E    A         
Sbjct: 307 VELHLHTKLSSMDGFCDPGGIVKLAHRMGHPAIAITDHGVCQGYPEAMLAADDIHKKDPD 366

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
            + I GC+          +      P      +
Sbjct: 367 FKLIYGCEAYFVDDMVPCVYGVKDQPLDGEFCV 399


>gi|262066554|ref|ZP_06026166.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
            33693]
 gi|291379736|gb|EFE87254.1| DNA polymerase III, alpha subunit [Fusobacterium periodonticum ATCC
            33693]
          Length = 1449

 Score =  203 bits (517), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 161/954 (16%), Positives = 320/954 (33%), Gaps = 193/954 (20%)

Query: 51   NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            N+F  + F +K    GI          +   ++    +      ++ +I++ V T EG +
Sbjct: 576  NMF--IIFLEKYKEKGI----------EYLKDINKGFEVNVKKQSLRNIMVQVKTQEGLK 623

Query: 111  RLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS-----GPIDRAFFFNSSQ 165
             + +LVS  ++   G +  RI  S L+E   EGLI+ +  S+     G +   +     +
Sbjct: 624  NMYKLVSEGHIKYFGNKKARIPKSVLKE-NREGLIVGSSLSAHFLNTGELVELYLRRDLE 682

Query: 166  VAEKRLLTF--KKLFGDRLYVNLQRHRGYD--------RYRESQVVQLAYTHELPLVATN 215
              E+    +   +L     Y  L    G                   L     + + A++
Sbjct: 683  KLEETAKFYDYIELLPKSTYNELIEKEGTGSLASYDDVEKMNKYFYDLGKRLGILVTASS 742

Query: 216  NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            N  +L E +     +L+   + +      R     + +    ++ +          E   
Sbjct: 743  NVHYLDENEDIIRSILL---YGSGTVYNSRQYSINNGFYFRTTDEMLKEFSYLGEKEAKE 799

Query: 276  EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
             I    + I  +    +    E       +  E  +R                       
Sbjct: 800  VIITNTNKIADMVEEGIKPIPEGFFPPKMENAEEIVRTMTYEKAYRIYGDPL------PD 853

Query: 336  DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
               +RL+ ELN I    FS  +L     ++ +  N   VG  RGS   S+ A+ + IT++
Sbjct: 854  IVSKRLERELNAIINNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGSSLVAFMMGITEV 912

Query: 396  DPLR-----------------------------------------FSLLFERFLNPDRMS 414
            + L                                          +S+ FE F+      
Sbjct: 913  NALYPHYICDNPECKHSEFIEKEGVGIDLPDKICPNCGAKLRKDGYSIPFEVFMGFKGDK 972

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V +           
Sbjct: 973  VPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAEAYVRK----------- 1021

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI 534
                               +D+     R     + RL + ++K          H  G+VI
Sbjct: 1022 -----------------YFEDNNLNAVRAEIIRLGRLCQGAKKTT------GQHPGGMVI 1058

Query: 535  GDR--PLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
              +   + +  P+ R    +      T ++   +++  L+K D LG    T ++     L
Sbjct: 1059 VPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDE-QLVKLDILGHDDPTTIK-----L 1112

Query: 590  AQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQLESSGMRQALEGM 635
             Q    +++  IP  D +T  + ++                T GI +  +  +RQ L   
Sbjct: 1113 LQEYTNMEVKDIPLADKDTLKIFSSTESLGVSPEEIGTEIGTYGIPEFGTGFVRQMLIDT 1172

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
            +P    +++ +  L   G    +                        + T   II     
Sbjct: 1173 RPTTFAELVRISGLSH-GTNVWLNNAQEFVRN--------------GQATLSQIITVRDD 1217

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            +    +  G   S+A  +   + K   ++  +  E++ +   +  +      +   +   
Sbjct: 1218 IMNYLIDQGLDNSDAFKIMEFVRKGKPKKEPENWEKYSNMMKEKNVPDWYIESCRRI--- 1274

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK-------------- 801
              +Y F K HA AY +++ + A+ K H P+ F AA ++ + D+ +               
Sbjct: 1275 --EYMFPKGHAVAYVMMAMRIAYFKVHQPLAFYAAFLSRKADDFDMEVMSKGVLAKQKLE 1332

Query: 802  -----------------IKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIK 843
                             I +   +     I+++P  +       FK+ D++I   L  I 
Sbjct: 1333 ELSKEPKLDPKKKNEQAICEIVVELEARGIELLPVDIYLSEGRKFKIEDDKIRIPLIGIS 1392

Query: 844  GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            G+G     +I++   +  F S+ED   R    K+++ V + L   GA+     +
Sbjct: 1393 GLGGAVIENILKEREEGKFISVEDLKRRT---KMSQTVADKLRSIGAISSLSET 1443



 Score = 81.0 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-----G 66
           V L  H+  S + G   + +++ +       AIAITD + + S     + A         
Sbjct: 331 VELHTHTKMSEMVGVTDVEDLIKRAKEYGHKAIAITDYSVVHSYPAAYKTAKKLSKDDDK 390

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           ++ I GC++ +   + L +TN           +V 
Sbjct: 391 MKVIFGCEMYMIDDEALMITNPKDKKIDEEEFVVF 425


>gi|154484752|ref|ZP_02027200.1| hypothetical protein EUBVEN_02469 [Eubacterium ventriosum ATCC 27560]
 gi|149734600|gb|EDM50517.1| hypothetical protein EUBVEN_02469 [Eubacterium ventriosum ATCC 27560]
          Length = 1474

 Score =  203 bits (517), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 150/932 (16%), Positives = 305/932 (32%), Gaps = 127/932 (13%)

Query: 58   FSQKAC---AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            F +        GI        ++D  +     ++           ++LV    G   L +
Sbjct: 564  FLKLCKMLEGKGID-------NLDELNRQGKQSKNLIDKLPAHHAIILVKNQVGRVNLYK 616

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            L+S+ ++     +  RI  S   E+ +EGLI+ +   +G + +A     SQ    RL  F
Sbjct: 617  LISKSHIETFANKRPRILKSDYLEL-SEGLIIGSACEAGELYQAILHGKSQQEIARLAEF 675

Query: 175  KKLF-----GDRLYV------NLQRHR-------GYDRYRESQVVQLAYTHELPLVATNN 216
               F     G+  ++       +   +          +    +++ L        VAT +
Sbjct: 676  YDYFEVQPIGNNEFMLKTGDPEIDDRKKFLVDSVEELQEVNKKIIDLGKKFNKMTVATCD 735

Query: 217  SLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
              FL  ED     ++          +    +        +       + D   A E  ++
Sbjct: 736  VHFLDPEDEIYRRIIQCGN----GFKDADNQAPLYLRTTDEMLKEFDYLDSDLAEEIVIK 791

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
               R + +++  +PI P       D      E  LRN           +         + 
Sbjct: 792  NPARINDMIENISPIHPDKCPPVLD----NSEENLRNICFEKAHDMYGE------KLPKI 841

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               RL+ ELN I    ++  +++    +  + ++   VG  RGS   S  A    IT+++
Sbjct: 842  VEDRLEVELNSIIGNGYAVMYIMAQRLVWKSNEDGYLVG-SRGSVGSSFAATMSGITEVN 900

Query: 397  ---PLRFSLLFERFLNPDRMSMPD-FDIDFCQDRRDEV-----------------IRYVQ 435
               P  +    +     D +++PD  D +  ++ +D +                   Y  
Sbjct: 901  PLAPHYYCTECKSSFFEDEVTVPDEADKEAVKEIQDTIRQLREDGGVGLDLPPRKCPYCG 960

Query: 436  NKYGHERVAQIITFGSLQAKAALR--DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
                 +       F +       +  D+       Y         +     H      IA
Sbjct: 961  KDMCRDGFEIP--FETFLGFGGTKEPDIDLNFSGEYQSNAHAYTEVMFGKGHTFRAGTIA 1018

Query: 494  DDSR---FREARLADPSVDRLLEIS------QKLEGLYRHASTHAAGIVIGDRP--LSQL 542
              +    +   +       ++   +      +  +G+ R    H  GIVI  R   + + 
Sbjct: 1019 GLAEKTAYGYVKNYYEEHGQIKRTAEIDRISRGCQGIRRSTGQHPGGIVIVPRDKEIYEF 1078

Query: 543  VPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
             P+ +         +T         A L+K D LG    T++++          +     
Sbjct: 1079 TPIQKPANDMTTDIITTHFEYHAIDANLLKLDILGHDDPTMIRRLEKLTNTNVNRDVP-- 1136

Query: 601  IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
               +D +   L T    LGI   +  G      G+     + +I ++   +P  I ++V 
Sbjct: 1137 --INDPKVMSLFTGPEALGITSDDIDGCPTGSLGLPELGTDFVIQMLVDTKPTKISDLVN 1194

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
             +   +G +  +     +    + T    I     + +  +  G     +  +   + K 
Sbjct: 1195 ISGLSHGTDVWLGNAQTLIEEGRCTISTAICTRDDIMVYLMHKGIEPQVSFQIMEHVRKG 1254

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
               ++ K K+       +  + +    + +    K   Y F K+HAAAY +++ + AW K
Sbjct: 1255 KGLQIYKDKKSGKEINEEEVMHQHNVPDWYIGSCKKIKYMFPKAHAAAYIMMALRVAWYK 1314

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFC---------------------------------- 806
             + P+ + AA   +                                              
Sbjct: 1315 VYIPLAYYAAYFAIRAKAFNYETMCRGKEKLEYYMADLKRKKANHEIAKKDEDALGDMKV 1374

Query: 807  -QDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASAD--KPF 862
             Q+      + MP  +      +F++ DN++  SL  I+G+G   A  ++EA A+   PF
Sbjct: 1375 VQEMYARGFEFMPIDIYKAKAHEFQIIDNKLMPSLDTIEGLGEKAADGLVEAVANQSGPF 1434

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             S  +   +    KL++ V+E++   G L+  
Sbjct: 1435 VSKNELREK---SKLSKTVIETMSSLGLLEGM 1463



 Score = 77.9 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 11/97 (11%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ-------KACA 64
           + L  H+  S ++G      I+ +       AIAITD   + +  +          +   
Sbjct: 313 IELHCHTKMSDMDGVSECKKIVRRAYEWGHKAIAITDHGVVQAFPDAWHEYEAIEAECEK 372

Query: 65  AG----IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           AG     + I G +  +       + N          
Sbjct: 373 AGRECDFKVIYGVEAYLVDDLKDMIVNPKGQHLNDRY 409


>gi|149688722|gb|ABR27772.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
          Length = 316

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 96/331 (29%), Positives = 157/331 (47%), Gaps = 25/331 (7%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
               + P + I+DT+NL  ALEF++     G QPIIG Q+    +D   +          
Sbjct: 2   CKEKKIPCLGISDTSNLCGALEFAENISKVGTQPIIGTQIYFRFEDTTGL---------- 51

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
              + L+     GY+R+IEL SR YL +       + +  L  I TEG+ +L+G   G  
Sbjct: 52  ---LPLIALNENGYKRIIELSSRSYLENDALSDPHLDVKDLL-IDTEGVSLLSGTIQGLF 107

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVAT 214
            + F         K   +    F D  Y+ +QRH   +     +  ++ +   ++P++AT
Sbjct: 108 GKLFEKGRLDEISKLYRSLSSKFNDNFYLEIQRHGDQNEIAFEKFNLEQSLKIQIPIIAT 167

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENT 274
           N   +L+ + +EAHD L  +   T V++K+R + +  HY K+  EM  +FSDLPEALEN 
Sbjct: 168 NEVYYLTPDMHEAHDALTCIGSKTYVNEKNRIKYSNQHYFKSNEEMSKLFSDLPEALENN 227

Query: 275 VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL------AQGAI 328
             +  +C+F  Q   P+LP    ++        +  L+  ++ GL+ +        +  +
Sbjct: 228 FNLPFKCNFRPQFSKPVLPNISSEKG----GNADEMLKKDSLDGLKEKFQKVFKIEENNL 283

Query: 329 AKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   Y+ RLD EL +I  MK+  YFLI
Sbjct: 284 KTDDKFLKYKDRLDHELKIIIEMKYPSYFLI 314


>gi|157363879|ref|YP_001470646.1| DNA-directed DNA polymerase [Thermotoga lettingae TMO]
 gi|157314483|gb|ABV33582.1| DNA-directed DNA polymerase [Thermotoga lettingae TMO]
          Length = 844

 Score =  203 bits (516), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 183/824 (22%), Positives = 323/824 (39%), Gaps = 115/824 (13%)

Query: 196 RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
           R  +VV  A +  L  +   +  F        H   +  ++  +     R      +   
Sbjct: 17  RLEEVVNAAKSFGLKSLMLADQNFH----ACVHFNKICRSNGIIPVHALRIDEKIFYAQD 72

Query: 256 NRSEMVSIFSDLPEA-------------LENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                  I +    +             L   +  +   +         +        ++
Sbjct: 73  RDQYEELIKAYNESSQPKTPWVNIDSVKLIYYLRESDYEAHAFLCQLLSVQPKKGAYFEN 132

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYH------AQDYRQRLDFELNVIARMKFSGY 356
              +  + L  K                            Y+ R + E+ +I +M    Y
Sbjct: 133 NLTDVADALNCKPYDLKVQMSFPKPEKGWLRNFSKKVPPGYQPRFESEVEIIEKMNLESY 192

Query: 357 FLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMP 416
           F  V   +  A+  NI VGPGRGS  GS+ A+ L IT IDP++  LLFERFLN  R   P
Sbjct: 193 FYTVKKIVDTARSMNICVGPGRGSAVGSLVAFILGITQIDPVKHDLLFERFLNEYRQEPP 252

Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
           D DID    +R  +I  +   +     AQI +F +L  K+   +  R             
Sbjct: 253 DIDIDVEDRKRSMLIEQLIRVFP--FCAQISSFSTLSLKSINAEARR------------- 297

Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
                     +  + I   ++    R                       S HAAG++I +
Sbjct: 298 ------LNLTIKDEHIKLLNKLPYRR-----------------------SVHAAGLIIAN 328

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
               +++ +     S+  + +++M  ++  G+ K D LGL TLT++      L       
Sbjct: 329 ----EVLNLPMVRDSNFRILEYDMDSLQGIGVTKIDLLGLTTLTMISNMKKTLK------ 378

Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            +  +P DD  TY ++++  T GIFQLES  +R     ++P    ++  L+++ RPGP+ 
Sbjct: 379 -IDSVPVDDFSTYEMISSGKTTGIFQLESLPVRSLCRQVRPQEFNELSVLLAINRPGPLI 437

Query: 657 NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             +     +  +      H  + P    T GV+IYQEQ+M++A  ++  S +E+D+ R+A
Sbjct: 438 ARLNRIYAERKRGCNREYHEDLFPE---TFGVVIYQEQIMKLAMSMADMSPAESDLFRKA 494

Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
           M  K +  M    E+  +     G SK+    +  +L +F+ Y FNKSH+ AYA++SYQ 
Sbjct: 495 MSHKDRLIMKAAVEKLRNKMIDKGYSKSFVNELANILIQFSSYAFNKSHSVAYAMLSYQL 554

Query: 777 AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY 836
           A++K H+P  F    +    ++  K+    Q+ R    +++ PSVN       + +++  
Sbjct: 555 AYIKNHFPKVFFQHYIKEHSNDPSKVFAAVQELRTTGFEVIQPSVNPV----DLKEDQFQ 610

Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             + AI GVG++  + + +  A  PF+ ++DF  +     L    ++ L  AGA DC  +
Sbjct: 611 LPMEAIAGVGSSVVQ-LCQNRA--PFEDIQDFAKKTS---LPLSTIQRLAHAGAFDCIYH 664

Query: 897 SRM---QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
           +R    +   S       +         K E+ F                         +
Sbjct: 665 TRENSIKAFNSFQKGFDPSLLEISTVFGKRESRFDTN---------------MTHIDILK 709

Query: 954 NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRL 997
            E++V GF     PL  +K  L +       +  +  R   + +
Sbjct: 710 LEEQVYGF-----PLTPFKTYLSRK-FAPLSDVYSYARTLPVSV 747



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 42/118 (35%), Gaps = 28/118 (23%)

Query: 18  SSYSLLEGAL-SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
           S YS  EG++  L  +++   +    ++ + D  N  + + F++   + GI P+   ++D
Sbjct: 7   SPYSF-EGSILRLEEVVNAAKSFGLKSLMLADQ-NFHACVHFNKICRSNGIIPVHALRID 64

Query: 77  IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
                                  +      + Y+ LI+     Y      ++  + + 
Sbjct: 65  EK---------------------IFYAQDRDQYEELIK----AYNESSQPKTPWVNID 97


>gi|149688712|gb|ABR27767.1| ATP-dependent helicase [Candidatus Pelagibacter ubique HTCC1002]
 gi|149688714|gb|ABR27768.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
 gi|149688716|gb|ABR27769.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
 gi|149688718|gb|ABR27770.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
 gi|149688720|gb|ABR27771.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
 gi|149688724|gb|ABR27773.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
          Length = 316

 Score =  203 bits (515), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 96/331 (29%), Positives = 157/331 (47%), Gaps = 25/331 (7%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
               + P + I+DT+NL  ALEF++     G QPIIG Q+    +D   +          
Sbjct: 2   CKEKKIPCLGISDTSNLCGALEFAENISKVGTQPIIGTQIYFRFEDTTGL---------- 51

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
              + L+     GY+R+IEL SR YL +       + +  L  I TEG+ +L+G   G  
Sbjct: 52  ---LPLIALNENGYKRIIELSSRSYLENDALSDPHLDVKDLL-IDTEGVSLLSGTIQGLF 107

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVAT 214
            + F         K   +    F D  Y+ +QRH   +     +  ++ +   ++P++AT
Sbjct: 108 GKLFEKGRLDEISKLYRSLSSKFNDNFYLEIQRHGDQNEIAFEKFNLEQSLKIQIPIIAT 167

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENT 274
           N   +L+ + +EAHD L  +   T V++K+R + +  HY K+  EM  +FSDLPEALEN 
Sbjct: 168 NEVYYLTPDMHEAHDALTCIGSKTYVNEKNRIKYSNQHYFKSNEEMSKLFSDLPEALENN 227

Query: 275 VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL------AQGAI 328
             +  +C+F  Q   P+LP    ++        +  L+  ++ GL+ +        +  +
Sbjct: 228 FNLPFKCNFRPQFSKPVLPNISSEKG----GSADEILKKDSLDGLKEKFLKVFKVEENNL 283

Query: 329 AKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   Y+ RLD EL +I  MK+  YFLI
Sbjct: 284 KTDDKFLKYKDRLDHELKIIIEMKYPSYFLI 314


>gi|319651828|ref|ZP_08005953.1| hypothetical protein HMPREF1013_02565 [Bacillus sp. 2_A_57_CT2]
 gi|317396480|gb|EFV77193.1| hypothetical protein HMPREF1013_02565 [Bacillus sp. 2_A_57_CT2]
          Length = 226

 Score =  203 bits (515), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 51/217 (23%), Positives = 97/217 (44%), Gaps = 17/217 (7%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           SF+HL V+S+YSLL     +  ++     ++ PA+A+TD N ++ A+ F ++     I+P
Sbjct: 2   SFIHLHVYSAYSLLSSTARIEQLVSGARENRFPALALTDRNVMYGAVAFYKECLKQSIKP 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           I+G  +D+            +        +VLL    +G+Q L+++ S +          
Sbjct: 62  ILGLSVDV----------LSEISEGEAYPMVLLAKDRQGFQNLLKITSTVQTKSPEG--- 108

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNLQR 188
            I + WL+     GL  LT G  G I+          A++    F  LF     +  +Q 
Sbjct: 109 -IPVKWLKHY-AGGLFALTPGLDGEIEHYLEAGEYGQAKRIAELFSSLFEPHSFFFTIQD 166

Query: 189 HRGYDRYRESQVV-QLAYTHELPLVATNNSLFLSEED 224
           H   +  +  +++ QL+    + L A+N   ++ ++ 
Sbjct: 167 HGLREEKKNHELLVQLSGETGIGLAASNGVCYIKKKM 203


>gi|149002437|ref|ZP_01827371.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP14-BS69]
 gi|147759374|gb|EDK66366.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP14-BS69]
          Length = 419

 Score =  203 bits (515), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 93/337 (27%), Positives = 161/337 (47%), Gaps = 27/337 (8%)

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            MQ+AQ  +G+SL +AD+LRRAMGKK    M + +  FI G+ + G +   A  +F+++ K
Sbjct: 1    MQVAQRFAGFSLGKADILRRAMGKKDVSAMHEMRASFIQGSLEAGHTVEKAEQVFDVMEK 60

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            FA YGFN+SHA AY+ +++Q A+ KTHYP  F    +     +      +  DA +   +
Sbjct: 61   FAGYGFNRSHAYAYSALAFQLAYFKTHYPAIFYQIMLNSANSD------YLIDALEAGFE 114

Query: 816  IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
            + P S+NT     K+ +  IY  L +IKGV    A  I+E   ++P+ ++EDF +++   
Sbjct: 115  VAPLSINTIPYHDKIANKAIYLGLKSIKGVSNDLALWIIE---NRPYSNIEDFIAKLPEN 171

Query: 876  KLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFS 935
             L   +LE LV  G  D F  +R ++  +L N+ ++ + +         ++F     ++ 
Sbjct: 172  YLKLPLLEPLVKVGLFDSFEKNRQKVFNNLANLFEFVKEL--------GSLFGDAIYSWQ 223

Query: 936  DKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNI 995
            +              +F  EQ +LG   S HPL      +    I            +  
Sbjct: 224  ES------EDWTEQEKFYMEQELLGIGVSKHPLQA----IASKAIYPITPIGNLSENSYA 273

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   V   +  +T+KG  + ++   +  K+ +   F
Sbjct: 274  IILVEVQKIKVIRTKKGENMAFLQADDSKKKLDVTLF 310


>gi|289806004|ref|ZP_06536633.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 158

 Score =  203 bits (515), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 11/169 (6%)

Query: 20  YSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDM 79
           YS+++G      ++ K A+   PA+AITD  NL   ++F      AGI+PI+G   ++  
Sbjct: 1   YSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHN 60

Query: 80  QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEI 139
           +               +  + +L +   GYQ L  L+S+ Y    G     I   WL E+
Sbjct: 61  E----------LLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL 110

Query: 140 GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
             EGLI+L+GG  G + R     +  + E+ +  ++  F DR ++ L R
Sbjct: 111 -KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIR 158


>gi|229824922|ref|ZP_04450991.1| hypothetical protein GCWU000182_00271 [Abiotrophia defectiva ATCC
            49176]
 gi|229790925|gb|EEP27039.1| hypothetical protein GCWU000182_00271 [Abiotrophia defectiva ATCC
            49176]
          Length = 1463

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 151/940 (16%), Positives = 288/940 (30%), Gaps = 188/940 (20%)

Query: 44   IAITDTNNLFSALEFSQKACA-AG------IQPIIGCQLDIDMQDNLKMTNQGKTPF--- 93
            + IT        LE   +A   AG      I+    C+L +    N  + N         
Sbjct: 569  LGIT--------LEHHHRAVDDAGCTAEIYIKL---CELAVTKYGNELLGNFNTNEGFCC 617

Query: 94   -----PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLT 148
                      I++L     G   L +LVS  +L +  ++  RI  S L     EGLI+ +
Sbjct: 618  DTIKKMGTDHIIILAKNDIGRINLYKLVSLSHL-EYFQRRPRIPKSLLMA-NREGLIIGS 675

Query: 149  GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG----DRLYVNLQRHRGYD-------RYRE 197
               +G + +A      +     +  F   F     D     ++  R  D       R   
Sbjct: 676  ACEAGELYQAVLRRHGEDELAAIADFYDYFEIQPLDNNGFMIESDRVPDITSEEDLREIN 735

Query: 198  SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
             ++V+L      P+VAT ++ FL+ ED      L+              +          
Sbjct: 736  RKIVELGEKFNKPVVATCDAHFLNPEDEIYRKYLLWSKG---------MKDADRPLPLYL 786

Query: 258  SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE-CDDIQKEEENELRNKAV 316
                 +  +     +   E     +  L          +  + C  I +  + ELR    
Sbjct: 787  RTTEEMLEEFAYLGKEKAEEVVITNTNLIADMIENISPVRPDKCAPIIENSDAELRRICY 846

Query: 317  AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
                              +    RL+ ELN I    F+  ++I    +  + ++   VG 
Sbjct: 847  DKAHEIYGDDL------PKKVVDRLEHELNSIISNGFAVMYIIAQKLVWKSNEDGYLVG- 899

Query: 377  GRGSGAGSVTAYALTITDIDPLR------------------------------------- 399
             RGS   S  A+   IT+++ L                                      
Sbjct: 900  SRGSVGSSFVAFLSGITEVNSLSAHYYCEHCHYVDFDSDEVKSFSGKSGCDMPDKNCPVC 959

Query: 400  --------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
                      + FE FL  +    PD D++F  + + +   Y +  +G  +  +  T G 
Sbjct: 960  GKPLIKDGHDIPFETFLGFNGDKEPDIDLNFSGEYQAKAHAYTEVIFGEGQTFRAGTIGG 1019

Query: 452  LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRL 511
            +  K A   V +  +   + V R  +                                 +
Sbjct: 1020 VADKTAYGYVLKYNEEHDNIVMRRSE---------------------------------I 1046

Query: 512  LEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDV--RSDLPVTQFNMKWIEKAG 567
              +S    G+ R    H  GIV+      ++   P+           +T           
Sbjct: 1047 ERVSAGCIGVRRTTGQHPGGIVVLPLGENINSFTPVQHPANKMDTPIITTHFDYHSIDHN 1106

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
            L+K D LG    T+++     + +    V    I FDD +   L  +  +L +   +  G
Sbjct: 1107 LLKLDILGHDDPTMIR-----MLEDLTGVVAREIRFDDEKVLSLFNSLDSLDLKAEDLDG 1161

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
                  G+     + ++ ++   +P    ++V  +   +G +        +    K    
Sbjct: 1162 YDLGSLGLPELGTDFVMQMLRDTKPKCFSDLVRISGLSHGTDVWTGNTQTLIAENKCELS 1221

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
              I     + I  +  G     A  +  ++ K      +     +     ++ +      
Sbjct: 1222 TAICTRDDIMIYLIDMGLEPGHAFKIMESVRKGKGLTPE-----WEQEMLEHNVPDWYIW 1276

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK------ 801
            +  ++      Y F K+HA AY +++ + A+ K HYP+ + +A  ++     +       
Sbjct: 1277 SCKKI-----KYMFPKAHAVAYIMMALRIAYFKVHYPLAYYSAYFSIRAKAFDYGLFCFG 1331

Query: 802  ----------------------------IKKFCQDARQFNIQIMPPSVNT-PCVDFKVGD 832
                                              +      + MP  +       F++ D
Sbjct: 1332 KEKLLNVIKEIKKMEKYQRKKTDEDTLGDAYIVLEMYARGFEFMPIDIYKAKPKHFRIID 1391

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
             +I  +L  I+G+G   A  + EA+    F S +D   R 
Sbjct: 1392 GKIMPALVTIEGLGDKAAYALYEAAKKGKFLSKDDLKQRA 1431



 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS---ALEFSQKACAAGIQ 68
           V L +H++ S ++  +   N+L  ++     A+A+TD   +     AL    K      +
Sbjct: 347 VELHLHTNMSEMDAVIDPGNLLKTLSEWGHSAVALTDHGVVQGFTNALHAKAKLKMKDFK 406

Query: 69  PIIGCQLDIDMQ 80
            I G +  +   
Sbjct: 407 LIYGVEGYLVND 418


>gi|226323840|ref|ZP_03799358.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758]
 gi|225207389|gb|EEG89743.1| hypothetical protein COPCOM_01615 [Coprococcus comes ATCC 27758]
          Length = 1535

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 152/952 (15%), Positives = 294/952 (30%), Gaps = 186/952 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLD-IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            ++F Q             +L  +   +     N           +++L     G   L +
Sbjct: 645  VKFVQMLKER--------ELTTLAKVNEFGDLNPDSIKKLPTYHVIILARNDIGRVNLYQ 696

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVS  +L+    +  RI  S L E   EGLI+ +   +G + RA           +++ F
Sbjct: 697  LVSASHLV-YYNRRPRIPKSVLNE-HREGLIVGSACEAGELYRALLDGKPDETIAKIVDF 754

Query: 175  KKLFGDRLYVNLQRHRGY------DR-----------YRESQVVQLAYTHELPLVATNNS 217
                    Y+ +Q           D+               ++V L      P+V T + 
Sbjct: 755  YD------YLEIQPLGNNAFMVESDKVTSVNSMEDIMDLNQKIVHLGEQFHKPVVGTCDV 808

Query: 218  LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEI 277
             F+  ED     ++MA          D  +  P +       +           E   E+
Sbjct: 809  HFMDPEDEVYRRIIMAGK-----GFGDADKQAPLYLRTTEEMLDEFA---YLGSEKAYEV 860

Query: 278  ARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
              R + ++      +      +C  + +  +  LR+                     +  
Sbjct: 861  VIRNTNLIADMIEKISPVRPDKCPPVIENSDQMLRDICYNKAHSMYGDPL------PEIV 914

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
             +RL+ ELN I    F+  ++I    +  + ++   VG  RGS   S  A    IT+++P
Sbjct: 915  HERLERELNSIISNGFAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFVATMAGITEVNP 973

Query: 398  L---------------------------------------------RFSLLFERFLNPDR 412
            L                                              F + FE FL    
Sbjct: 974  LVPHYYCSNCHYSDFDSEEVKKYVGGCGHDMPDKNCPVCGQKLVKDGFDIPFETFLGFKG 1033

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
               PD D++F  D + +  +Y +  +G  +  +  T  +L  K A   V    +      
Sbjct: 1034 NKEPDIDLNFSGDYQSKAHKYTEVIFGKGQTFRAGTIAALAEKTAYGYVKNYYE------ 1087

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
                                         R        +  I     G+ R    H  GI
Sbjct: 1088 ----------------------------ERGDRKRNCEIDRIVAGCTGIRRSTGQHPGGI 1119

Query: 533  V--IGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
            V       ++   P+           +T           L+K D LG    T+++   + 
Sbjct: 1120 VVLPHGEDINSFTPIQHPANDMTTDIITTHFDYHSIDHNLLKLDILGHDDPTMIKTLEEL 1179

Query: 589  LAQRGVKVDLS---------LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            +    +               IP DD     L      LGI   +  G      G+    
Sbjct: 1180 INSDAMDNKYDGVNNVFKATDIPLDDPGVMGLFAGTEVLGITPEDIDGCPLGCLGVPEFG 1239

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
             + +I +V   +P  + +++  +   +G +  ++    +    K T    I     +   
Sbjct: 1240 TDFVIQMVIDTKPKTLSDLIRISGLSHGTDVWLNNAQTLIEEGKATISTAICTRDDIMTY 1299

Query: 700  QLLSGYSLSEADVLRRAMGKKI-KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
             +  G    E+  +   + K    +   K+  +F     ++ + +    +   +      
Sbjct: 1300 LINKGVESEESFTIMERVRKGTVAKGKCKEWSQFKKDMLEHDVPEWYIWSCERI-----K 1354

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM-------------------------- 792
            Y F K+HAAAY +++Y+ A+ K +YP+ + AA                            
Sbjct: 1355 YMFPKAHAAAYVMMAYRIAYCKINYPLAYYAAYFGIRASAFSYELMGQGKEKLLYHMKEY 1414

Query: 793  ---------TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAI 842
                     + +  +  K  K   +        +P  +       F++  +++      I
Sbjct: 1415 KRRAELNQLSKKDQDTLKDMKNVLEMYARGFDFLPIDIYKSKASKFQIVGDKLLPPFNTI 1474

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             G+G   A  +  A+ D P+ S +DF  R    K+++ +++ +   G L   
Sbjct: 1475 DGMGDKAAEAMEIAAKDGPYLSKDDFRQRT---KVSKTLVDLMADMGLLGDL 1523



 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 8/92 (8%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS------ALEFSQKACAA 65
           V L  H+  S ++G     +++ +      PAIAITD   +         +E        
Sbjct: 400 VELHCHTKMSDMDGVSEAKDLVKRAHDWGHPAIAITDHGVVQGFTDANHVIE--DLDKDD 457

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
             + I G +  +         N+         
Sbjct: 458 PFKVIYGVEGYLVDDLTKIAENEKGQDLEGTY 489


>gi|149688728|gb|ABR27775.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
          Length = 316

 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 96/331 (29%), Positives = 157/331 (47%), Gaps = 25/331 (7%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
               + P + I+DT+NL  ALEF++     G QPIIG Q+    +D   +          
Sbjct: 2   CKEKKIPCLGISDTSNLCGALEFAENISKVGTQPIIGTQIYFKFEDTTGL---------- 51

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
              + L+     GY+R+IEL SR YL +       + +  L  I TEG+ +L+G   G  
Sbjct: 52  ---LPLIALNENGYKRIIELSSRSYLENDALSDPHLDVKELL-IDTEGVSLLSGTIQGLF 107

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVAT 214
            + F         K   +    F D  Y+ +QRH   +     +  ++ +   ++P++AT
Sbjct: 108 GKLFEKGRLDEISKLYRSLSSKFNDNFYLEIQRHGDQNEIAFEKFNLEQSLKIQIPIIAT 167

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENT 274
           N   +L+ + +EAHD L  +   T V++K+R + +  HY K+  EM  +FSDLPEALEN 
Sbjct: 168 NEVYYLTPDMHEAHDALTCIGSKTYVNEKNRIKYSNQHYFKSNEEMSKLFSDLPEALENN 227

Query: 275 VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL------AQGAI 328
             +  +C+F  Q   P+LP    ++        +  L+  ++ GL+ +        +  +
Sbjct: 228 FNLPFKCNFRPQFSKPVLPNISSEKG----GSADEILKKDSLDGLKEKFQKVFKIEENNL 283

Query: 329 AKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   Y+ RLD EL +I  MK+  YFLI
Sbjct: 284 KTDDKFLKYKDRLDHELKIIIEMKYPSYFLI 314


>gi|223984468|ref|ZP_03634601.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM
            12042]
 gi|223963539|gb|EEF67918.1| hypothetical protein HOLDEFILI_01895 [Holdemania filiformis DSM
            12042]
          Length = 1451

 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 137/912 (15%), Positives = 281/912 (30%), Gaps = 190/912 (20%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLL--------------DQGKQSVRICLSWLQEIGTEG 143
             + ++     G + L +LV+                   ++     RI    +QE+    
Sbjct: 591  HVNVIAKNQAGLKDLFKLVTLSNTDYLAVFGKANSKSSGEEFLAEPRILRRCIQEL-RGN 649

Query: 144  LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR----------HRGYD 193
            L++ +   +G +       + Q  E  +  +        Y+ +Q           H   D
Sbjct: 650  LLIGSACYNGEVFELAANRNQQDLEAAIAFYD-------YIEIQPLENYRPLVESHSLPD 702

Query: 194  RYRESQ----VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-------STVVSQ 242
              R  Q    +++ A     P+VAT +  +  +E+    D+ +             +  +
Sbjct: 703  TDRLKQVLMRIIRTAKKLNKPVVATGDVHYCKKEEKILRDIYIQTQGIGGVRHPLYIYDK 762

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
            + R R          +  +    D  E  +   E+       +      +    +K    
Sbjct: 763  ERRSRTVTPDQHFLTTNQMLQAFDWVEDRQLAYELVVEAPNAIADQVEKVLPVHDKLYTP 822

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            + +  E +L+            +         +   +RL+ ELN I    F+  + I   
Sbjct: 823  VIEGSEEKLKTICYENAHKTYGE------VLPEIVEKRLERELNSIIGNGFAVIYYISHL 876

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------- 399
             ++ + ++   VG  RGS   S  A    IT+++PL                        
Sbjct: 877  LVKKSNEDGYLVG-SRGSVGSSFVATMSGITEVNPLIPHYVCPDCQHSEFITDGSVKSGF 935

Query: 400  ------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
                                + FE FL  +   +PD D++F  + +D+   + +  +G +
Sbjct: 936  DLPAKKCPKCGAEMIVNGHDIAFETFLGFEGDKVPDIDLNFSGEYQDKAHAFTKTVFGED 995

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
             V +  T G++  K A   V    +    +  R  + +                      
Sbjct: 996  HVFRAGTIGTVAQKTAFGYVSGYAEEMGLENMRQAQRLR--------------------- 1034

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMY---RDVRSDLPVT 556
                        ++   EG+ R    H  GI+       +    P+     +  S+   T
Sbjct: 1035 ------------LANGCEGVKRTTGQHPGGIIVIPSSMDVYDFTPVQYPANNPDSEWKTT 1082

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             F+   I    ++KFD LG    T ++   +          + +   +    ++ +    
Sbjct: 1083 HFDFHDIHD-NVLKFDILGHVDPTAMRLLQNISG--IDPTTIPMNDPETMSIFNSVDALK 1139

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
                   E++G    L       +  I   + L RP     ++  +   +G +  ++   
Sbjct: 1140 ADPRVYGEATGAVG-LPEFGTKFVRGI---LELTRPSTFSELLRISGLSHGTDVWLNNAK 1195

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
             +         VI  ++ +     +  G    ++  +  ++ K    + +     +I   
Sbjct: 1196 DLIDGGLTLHDVIGCRDDI-MTYLIEKGMPKKDSFFIMESVRKGKGLKPE-----WIELM 1249

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
             +N I +    +  ++      Y F K+HA AY +++ + AW K H+P  +  A  TL  
Sbjct: 1250 KENNIPQWYIDSCLKI-----KYLFPKAHAVAYVMMAIRIAWFKVHHPYWYYVAFFTLRC 1304

Query: 797  DNV---------EKIKKFCQDARQFNIQIM------------------PPSVNTPCVDFK 829
            D           + IK+   + +                            +      F 
Sbjct: 1305 DAYEIETMVKGMDAIKRRMDEIQAMKSNPETKRQVTKKDEDLYSMFEACLEMYARGYRFS 1364

Query: 830  VGD----------------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
              D                  I      + G+G   A+ I+EA     F S ED  +R  
Sbjct: 1365 NIDIDKSLATEFRVLPDDLKTIIPPFTTVDGLGANVAKSIVEAREQGEFLSKEDLLNRTQ 1424

Query: 874  SKKLNRRVLESL 885
              +   R LE L
Sbjct: 1425 LSQTLMRKLEVL 1436



 Score = 59.0 bits (141), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 34/96 (35%), Gaps = 7/96 (7%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-------CA 64
           V L  H++ S ++G   +  ++ +       AIA+TD     +  +    A         
Sbjct: 306 VELHCHTNKSEMDGVCEVEELVTQAFKWGHRAIAVTDHMACQAFPKAQSCAAKLLKGNKD 365

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
              + + G ++++  +    + N           +V
Sbjct: 366 REFKILYGVEMNMVDEFLTIIRNPRADSLSDTAYVV 401


>gi|150021400|ref|YP_001306754.1| DNA-directed DNA polymerase [Thermosipho melanesiensis BI429]
 gi|149793921|gb|ABR31369.1| DNA-directed DNA polymerase [Thermosipho melanesiensis BI429]
          Length = 823

 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 202/818 (24%), Positives = 347/818 (42%), Gaps = 106/818 (12%)

Query: 197  ESQVVQLAYTHELPLVATNNSLFLS--EEDYEAHDVLMAVAHSTVVSQKDRPRVTPD--- 251
              +VV+ A+   +  +   ++ F +  +   E     +    S + + K       +   
Sbjct: 18   LEEVVKFAHKQGVNSLLLCDTNFHATVKFIEECQKYKITPIISYLYNDKIYYAKNTEELY 77

Query: 252  -----HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 +   N S +   + D  +         +R  + L  +   +    +    +I   
Sbjct: 78   ELFNAYNTNNFSSLKLNYIDKDDVYLAYYFPGKRRIYELFCNVLGVKCVEKGVLKNIYCN 137

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGY-HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
             E                +  I         Y++RL  EL +I    F  YF  V    +
Sbjct: 138  LEAYGYKLKSFQTLPTAPKNFIDVNKIKNNVYKERLIRELEIIKEKNFLDYFHTVYKITK 197

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
             AK+++I +GPGRGS  GS+ +Y L IT IDP++ +LLFERFLN  R   PD D+D   +
Sbjct: 198  IAKEHDIAIGPGRGSAVGSLLSYMLGITKIDPIKHNLLFERFLNKGRKEPPDIDLDVEDE 257

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
            +R E+I     K   + V  I TF ++  K   +             D            
Sbjct: 258  KRKELIE--LLKKEFKYVYYISTFSNIGPKTIKKIANEYKISTSELSD------------ 303

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                                            L GL  H S HAAGI+I   P+   VP+
Sbjct: 304  --------------------------------LLGLPTHKSVHAAGIIISKTPI--KVPI 329

Query: 546  YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
              D      V +++M  + K G IKFD LGLKTLT++ K    + +          P  D
Sbjct: 330  KED------VIEWDMDSLNKIGYIKFDILGLKTLTIMNKLEKKIGK----------PKLD 373

Query: 606  HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
              T++ ++   T GIFQLES+  ++ +  ++P  I+++  ++SL RPGP+   +      
Sbjct: 374  KITFNFISKGYTNGIFQLESNISKRIIRAIKPSSIDELSIVISLNRPGPLKAKLDRELAI 433

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
               ++      L++     T G+I++QEQ+M IA+  + +S  EADVLR+ + KK K+ +
Sbjct: 434  AKWKQRKKSFELLND----TFGIIVFQEQIMLIAKKYANFSNEEADVLRKGIAKKEKKLV 489

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
            +   ++         +S+     + +++ +F++Y FNKSHA AY+ ISY  A+ K H+P 
Sbjct: 490  EPLIKKLKKNILNI-LSENETNELIKIILEFSEYAFNKSHAIAYSYISYSLAYFKKHFPK 548

Query: 786  EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGV 845
            +F +  +  +   +EKI     + +    +I+PP++N             +  L  +KG+
Sbjct: 549  DFYSTLLKYDTTKIEKIIF---EMQSRGFKILPPNINGNPE----NKKEFHIPLTLVKGI 601

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
                 + I+   A+ P++SL+ F  +  +  +N  ++ESL+  G+ D    SR +LL  L
Sbjct: 602  NEKIEKEII---ANAPYNSLKGFFEK--NPNINFSIVESLIKIGSFDYLSESRRKLLMKL 656

Query: 906  DNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
              I+          ++   ++F      FS++I +EK        R + E   LGF  S 
Sbjct: 657  KEIRSGVNEKILELSS---SLFG---KNFSNEIKIEKL-----WERCDMEYNTLGFCISK 705

Query: 966  HPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
             P D +K +L  + +    E    I    +     V  
Sbjct: 706  -PFDEFKNLLSPLSVALSREQKLAINVKAV--GGYVSD 740



 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 18 SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          S YS     L L  ++         ++ + DT N  + ++F ++     I PII
Sbjct: 7  SPYSFKGSILKLEEVVKFAHKQGVNSLLLCDT-NFHATVKFIEECQKYKITPII 59


>gi|315038577|ref|YP_004032145.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
 gi|312276710|gb|ADQ59350.1| DNA polymerase [Lactobacillus amylovorus GRL 1112]
          Length = 1435

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 137/886 (15%), Positives = 275/886 (31%), Gaps = 195/886 (22%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                + +L    +G + L +LVS     D   +  R   S L ++  EGL+  +G   G 
Sbjct: 607  RPSHMTVLAKDQKGLKNLYKLVSIASTKD-FYRIPRTPKSDLADLH-EGLLYGSGCWQGD 664

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ----------RHRGYDRYRESQVV--- 201
            +  A        A ++   +        ++ +Q               D  +  +++   
Sbjct: 665  VFVAMMQKGYDEAREKAKFYD-------FLEVQPPATYSQLIADGLIKDEDQLEEIISNI 717

Query: 202  -QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
             +L      P+VAT +S ++   D     +L++   S     K +P +      +     
Sbjct: 718  YKLGKELNKPVVATGDSHYVEPHDAIYRTILISAQRSNPNRNKPQPDLHFYSTQEMLDAF 777

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
              +  D+  A E  +E   + +  +    PI                + E++        
Sbjct: 778  SFLGEDI--AKEIVIENTNKIADEISEIQPIKDGLYPPHIAH----ADEEMKKLTYDKAY 831

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                          +  + R+D ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 832  ELYGNPL------PKIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 884

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 885  VGSSLVATMSGITEVNPLAPHYRCPKCKYSQFFENGEYGSGFDLPDKNCPKCGTPLVKDG 944

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + F  FL      +PD D++F  D +     +++  +G +   +  T  ++  K A  
Sbjct: 945  QDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPDNSYRAGTIATVADKTAYG 1004

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                                          +   ++   +           L  ++  + 
Sbjct: 1005 YA----------------------------KHFDEERNLKLRNAE------LDRLASGIR 1030

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGIV+      +    P+            +T ++   I    ++KFD L
Sbjct: 1031 GVKRTTGQHPAGIVVVPDDMDIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDIL 1089

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGI 620
            G    T+++       Q    +D   IP DD     L ++                TLG+
Sbjct: 1090 GHDDPTMIRH-----LQDLSGIDPLTIPPDDPGVMSLFSSTKALGVTPEQIGSQTGTLGV 1144

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +R  LE  +P    +++ +  L                N ++ + +    +  
Sbjct: 1145 PEFGTRFVRGMLEETKPTTFAELLQISGLSHG-------TDVWLGNAEDLVNNGTCKLKD 1197

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            ++     ++        +  +  G     A     ++        +       +    + 
Sbjct: 1198 VIGCRDNIM--------MDLIHWGVKPEVAFSTMESVRHGRGISDENMAVLKKNKKIPDW 1249

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
               +              Y F K+HA AY +++ + AW K +YP  +  A  ++  D  +
Sbjct: 1250 YIPSCLKI---------KYMFPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLFD 1300

Query: 801  KIKK---------------------------------FCQDARQFNIQIMPPSVNTPCV- 826
             +                                      +  +  I+I    ++     
Sbjct: 1301 LVAMSHGKNTVKAAMKEIQDKGMDASAKDKSLLTVLEIANECLERGIKIKMVDIDQSEAT 1360

Query: 827  DFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            DFK+   + I     A+ G+G   A+ I+ A A+K F S ED   R
Sbjct: 1361 DFKILDKHTILAPFNAVPGLGDNAAKQIVAARAEKKFLSKEDLAKR 1406



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 38/90 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   +  + +       Q AIAITD  ++ S  E      A G++ + 
Sbjct: 332 VELHLHTNMSQLDATNTPTDFIKTAKKFGQKAIAITDHGDVQSFPEAYSTGKATGMKILY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 392 GVEANMIDDHALLVLNPAPMTYEDREFVIF 421


>gi|296163562|ref|ZP_06846301.1| DNA-directed DNA polymerase [Burkholderia sp. Ch1-1]
 gi|295886188|gb|EFG66067.1| DNA-directed DNA polymerase [Burkholderia sp. Ch1-1]
          Length = 372

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 67/321 (20%), Positives = 130/321 (40%), Gaps = 27/321 (8%)

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            ++  + +DK  +R ++G  + G  K  A +IF+ +  F +Y F +SHAA++A++ Y ++W
Sbjct: 19   RQQPDGIDKYYDRIVNGMMERGYEKDFAESIFQQIHGFGEYSFPESHAASFALLVYASSW 78

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR---- 834
            +K H P  FL A +     +     +F QDA++ N++++P  V     +  +  ++    
Sbjct: 79   LKCHEPEAFLVAMLNSMPLDFYSASQFIQDAQRHNVKVLPADVTISNWNSVLERHKSASR 138

Query: 835  --IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
              +   L+ +KG+    A  I  A A + F S+ D   R    +L+R+ L+ L  A +L 
Sbjct: 139  PAVRLGLSLLKGMKDGAAERIEAARAVRQFASVSDLAKRA---QLDRKDLQVLAAANSLS 195

Query: 893  CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRF 952
                +R + L +          +   R +                               
Sbjct: 196  SLAGNRREALWASVAAVPDRDILADARMDD----------------ETPVLGAPTEGEDI 239

Query: 953  ENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
              +   +      HPL + +P L +  +      +    G   R   +V  +Q+  T KG
Sbjct: 240  VADYNSMSLTLGRHPLSLLRPALLEQRLVPAATLMTYRNGRLARGCGLVTVRQRPGTAKG 299

Query: 1013 SRIGWVTFSEPAKEYEANFFP 1033
              + +VT  +         +P
Sbjct: 300  --VMFVTIEDETGNVNIIIWP 318


>gi|325957051|ref|YP_004292463.1| DNA polymerase III subunit alpha [Lactobacillus acidophilus 30SC]
 gi|325333616|gb|ADZ07524.1| DNA polymerase III, alpha subunit [Lactobacillus acidophilus 30SC]
 gi|327183774|gb|AEA32221.1| DNA polymerase III, alpha subunit [Lactobacillus amylovorus GRL 1118]
          Length = 1435

 Score =  201 bits (512), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 137/886 (15%), Positives = 275/886 (31%), Gaps = 195/886 (22%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                + +L    +G + L +LVS     D   +  R   S L ++  EGL+  +G   G 
Sbjct: 607  RPSHMTVLAKDQKGLKNLYKLVSIASTKD-FYRIPRTPKSDLADLH-EGLLYGSGCWQGD 664

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ----------RHRGYDRYRESQVV--- 201
            +  A        A ++   +        ++ +Q               D  +  +++   
Sbjct: 665  VFVAMMQKGYDEAREKAKFYD-------FLEVQPPATYSQLIADGLIKDEDQLEEIISNI 717

Query: 202  -QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
             +L      P+VAT +S ++   D     +L++   S     K +P +      +     
Sbjct: 718  YKLGKELNKPVVATGDSHYVEPHDAIYRTILISAQRSNPNRNKPQPDLHFYSTQEMLDAF 777

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
              +  D+  A E  +E   + +  +    PI                + E++        
Sbjct: 778  SFLGEDI--AKEIVIENTNKIADEISEIQPIKDGLYPPHIAH----ADEEMKKLTYDKAY 831

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                          +  + R+D ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 832  ELYGNPL------PKIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 884

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 885  VGSSLVATMSGITEVNPLAPHYRCPKCKYSQFFENGEYGSGFDLPDKNCPKCGTPLVKDG 944

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + F  FL      +PD D++F  D +     +++  +G +   +  T  ++  K A  
Sbjct: 945  QDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPDNSYRAGTIATVADKTAYG 1004

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                                          +   ++   +           L  ++  + 
Sbjct: 1005 YA----------------------------KHFDEERNLKLRNAE------LDRLASGIR 1030

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGIV+      +    P+            +T ++   I    ++KFD L
Sbjct: 1031 GVKRTTGQHPAGIVVVPDDMDIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDIL 1089

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGI 620
            G    T+++       Q    +D   IP DD     L ++                TLG+
Sbjct: 1090 GHDDPTMIRH-----LQDLSGIDPLTIPPDDPGVMSLFSSTKALGVTPEQIGSQTGTLGV 1144

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +R  LE  +P    +++ +  L                N ++ + +    +  
Sbjct: 1145 PEFGTRFVRGMLEETKPTTFAELLQISGLSHG-------TDVWLGNAEDLVNNGTCKLKD 1197

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            ++     ++        +  +  G     A     ++        +       +    + 
Sbjct: 1198 VIGCRDNIM--------MDLIHWGVKPEVAFSTMESVRHGRGISDENMAVLKKNKKIPDW 1249

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
               +              Y F K+HA AY +++ + AW K +YP  +  A  ++  D  +
Sbjct: 1250 YIPSCLKI---------KYMFPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLFD 1300

Query: 801  KIKK---------------------------------FCQDARQFNIQIMPPSVNTPCV- 826
             +                                      +  +  I+I    ++     
Sbjct: 1301 LVAMSHGKNTVKAAMKEIQDKGMDASAKDKSLLTVLEIANECLERGIKIKMVDIDQSEAT 1360

Query: 827  DFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            DFK+   + I     A+ G+G   A+ I+ A A+K F S ED   R
Sbjct: 1361 DFKILDKHTILAPFNAVPGLGDNAAKQIVAARAEKKFLSKEDLAKR 1406



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 38/90 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   +  + +       Q AIAITD  ++ S  E      A G++ + 
Sbjct: 332 VELHLHTNMSQLDATNTPTDFIKTAKKFGQKAIAITDHGDVQSFPEAYSTGKATGMKILY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 392 GVEANMIDDHALLVLNPAPMTYEDREFVIF 421


>gi|291459111|ref|ZP_06598501.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078
            str. F0262]
 gi|291418365|gb|EFE92084.1| DNA polymerase III, alpha subunit [Oribacterium sp. oral taxon 078
            str. F0262]
          Length = 1517

 Score =  201 bits (512), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 157/933 (16%), Positives = 296/933 (31%), Gaps = 186/933 (19%)

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               G++        +   D+L    +           ++L     G   L  L+S  +L 
Sbjct: 655  RERGVK-------KLSEIDSLLFDYEANVRKLPSFHCIILAKNDIGRINLYRLISESHLK 707

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
               +++ +I  S L+    EGLI+ +  ++G + +A    + +     + +F        
Sbjct: 708  -YFRKNPKIPKSLLKRY-REGLILGSACAAGELFQAILRGAEEEQLLSIASFYD------ 759

Query: 183  YVNLQRHR------GYDRY----------RESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            Y+ +Q         G DRY             +++ L      P+ AT +  ++  ED  
Sbjct: 760  YLEIQPLGNNAFMLGSDRYSAKSREDLIAYNRKILSLGEQLGKPVCATCDCHYIEPEDDI 819

Query: 227  AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
               ++MA        +++    +              + +  +A E  ++  +R + + +
Sbjct: 820  YRRIIMAGR----GFEEEESDASLYFRNTEEMLSEFSYLEPNKAKEVVIDNPKRIADMCE 875

Query: 287  VHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELN 346
               P+ P        D     + ELR                      +   +RL+ EL 
Sbjct: 876  FIEPVRPDKCPPVIPD----SDAELRRICSETAHKMYGP------SLPRIVEERLETELR 925

Query: 347  VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------- 399
             I    +S  ++I    +  + ++   VG  RGS   S  A    IT+++PL        
Sbjct: 926  SIISNGYSVLYIIAQRLVDKSNEDGYLVG-SRGSVGSSFAATMAHITEVNPLPPHYVCPD 984

Query: 400  --------------------------------------FSLLFERFLNPDRMSMPDFDID 421
                                                  F + FE FL  +    PD D++
Sbjct: 985  CYWSDFDSPEVKAFSGMAGCDMPKKKCPHCGAELNRWGFDIPFETFLGFNGDKEPDIDLN 1044

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  + + +   Y    +G     +  T G+L  K A   V +  +               
Sbjct: 1045 FSGEYQAKAHAYTGEIFGEGHTFKAGTIGTLADKTAYGMVKKYYE--------------- 1089

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPL 539
                                R        +  + Q   G+ R    H  GIV       +
Sbjct: 1090 -------------------ERNLIKRGAEIERMVQGCVGVRRTTGQHPGGIVVLPHGEEI 1130

Query: 540  SQLVPMYRDVRS--DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
            +   P+           +T           L+K D LG    T+++K  D          
Sbjct: 1131 NTFTPVQHPANDLGSPIITTHFDYHKIDHNLLKLDILGHDDPTMIRKLQDLT----GIDP 1186

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +  IP D  E   L  +   LGI   +  G+R    G+        + +V   +P    +
Sbjct: 1187 VKDIPLDSPEVMSLFRSTEALGIRPEDIQGVRLGCLGIPEFGTSFAMQMVEDTKPRYFSD 1246

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
            ++  +   +G +  ++    +      T    I     + +  +  G    E+  +  A 
Sbjct: 1247 LIRISGLSHGTDVYLNNAQDLILEGVTTLQDAICCRDDIMVYLMHRGMDPGESFSIMEAT 1306

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K    + +     + S   K G+ +       ++      Y F K+HAAAY +++++ A
Sbjct: 1307 RKHKPLKEE-----WCSDMLKRGVPQWYIDACKKI-----KYMFPKAHAAAYVMMAWRVA 1356

Query: 778  WMKTHYPVEFLAASMTLEMDNVEKIKK--------------------------------F 805
            + K  YP E+ AA  ++  D  +  K                                  
Sbjct: 1357 YCKVFYPREYYAAYYSIRADGFDYDKMCFGLDKLRYYIKLYQEIERPTATESVCLRDMKI 1416

Query: 806  CQDARQFNIQIMPPSVNTPCV-DFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
            C++     I+  P  +      DF++ GD +I  S   + G+G   A  I E +    F 
Sbjct: 1417 CEEMYARGIEFAPIDIYRARAKDFQITGDGKIMPSFNCMAGLGEAVALGIEEGARKGAFL 1476

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            S +DF +R    +          FA      G 
Sbjct: 1477 SKDDFLNRTHCPR---------AFADKFSELGL 1500



 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG----I 67
           V L +H+  S ++G   +N+ +D   +    A+AITD   + +  + +      G     
Sbjct: 403 VELHLHTKMSDMDGVSDVNDYIDTALSFGMDAMAITDHGVVQAFPDAASHLKKLGKERDF 462

Query: 68  QPIIGCQLDIDMQ 80
           + I G +  +   
Sbjct: 463 KLIYGLEGYLVDD 475


>gi|116617801|ref|YP_818172.1| DNA polymerase III catalytic subunit, PolC type [Leuconostoc
            mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116096648|gb|ABJ61799.1| DNA polymerase III catalytic subunit, PolC type [Leuconostoc
            mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 1437

 Score =  201 bits (512), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 145/914 (15%), Positives = 303/914 (33%), Gaps = 169/914 (18%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            L+   + N +MT              LLV  A G + L +LVSR  + +   +  RI  S
Sbjct: 588  LNRHNELNDRMTEGDAWKHGRPVHATLLVQNATGLKNLYKLVSRSNI-EFFARVPRIPRS 646

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD- 193
             L++   EGL++ TG +SG +  +      Q AEK+   +        ++ +Q    Y  
Sbjct: 647  ILEQY-REGLLVGTGDTSGDVIISLIEKGIQEAEKKAAYYD-------FIEIQPTANYQP 698

Query: 194  -------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                         +     +V +    + P+V T +  + + ED    ++L+A       
Sbjct: 699  MIESGLIATEEKLQSILKDMVAIGDKLKKPVVVTEDVKYTNPEDKIYRNILIATQPGNPQ 758

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            ++   P +      +   +   + +DL  A +  ++     + +L+   P+         
Sbjct: 759  NRTALPDLNFKTTQELLDDYAFMGADL--AKKLVIDNTHLVANMLEDIEPLKSGSYPPNI 816

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                    +EL  +     +    +         ++ + R+D EL  I    F+ +++I 
Sbjct: 817  PGAG----DELTERTYRTAKQWYGEP------IPKEIQARIDQELKAIIGNGFAPHYIIA 866

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               +  + K+   VG  RGS   S  A    IT+++PL                      
Sbjct: 867  QRLVAKSVKDGYLVG-SRGSVGSSFVATMSGITEVNPLPPHYRSAHGDYFELVDPKEYES 925

Query: 400  ---------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
                                  ++ FE F+      +PD D++F  D +     Y++  +
Sbjct: 926  GYDLPEKEDPNHPGEFLIGDGQNIPFETFMGFTGNKVPDIDLNFSGDYQPIAHNYMKVLF 985

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G   V +  T  ++  K A   V                                    +
Sbjct: 986  GEHNVYRAGTIATVAEKTAFGYV----------------------------------KAY 1011

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRSDLPVT 556
                        +  ++Q + G+ R    H  GI+I      +    P+         + 
Sbjct: 1012 EREHDQHYRGAEIERLAQGMTGVKRTTGQHPGGILIVPREYEVYDFTPIQYPADDQKSL- 1070

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             +    ++   +   + L +  L     ++    +    +D   IP +D     L T+  
Sbjct: 1071 -WQTTHMDYHSIH-DNLLKMDILGHDDPTMVRTLKDMSGIDPQSIPANDPGVLSLFTSTE 1128

Query: 617  TLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
             LG+   Q+ S+     L     + +  +   ++  +P     ++  +   +G +  V  
Sbjct: 1129 ALGVTPEQIFSNTGTLGLPEFGTNFVRGM---LTETQPHTYSELLQISGLSHGTDVWVGN 1185

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
               +      T G +I     +    +  G   ++A  +   + K      + QK+    
Sbjct: 1186 ANELIENGTATIGTVIGTRDKIMTDLINWGVPAADAFNIMEKVRKGKGITEEYQKQLR-- 1243

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
                    +      +        Y F ++HAAAY +++ + A+ K ++P  + A   ++
Sbjct: 1244 --------EEKIPEWYIQSMLKIKYMFPRAHAAAYVLMALRIAYFKVYFPTIYYATYFSV 1295

Query: 795  EMDNVEKIKK---------------------------------FCQDARQFNIQIMPPSV 821
              D  + +                                      +A + NI      +
Sbjct: 1296 RADAFDIVAMSRGKDATKAAIQKLKSLGNDATVGDKNLLTVLEMANEALERNITFAMVDL 1355

Query: 822  NTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
            N     ++ +  + +     ++ G+G   A+ I+ A  +KPF S ED   R    K+++ 
Sbjct: 1356 NKSEALEWVIDGDTLIPPFVSLPGLGDNVAKQIVAARTEKPFISKEDLKKR---GKVSQT 1412

Query: 881  VLESLVFAGALDCF 894
            ++E +     LD  
Sbjct: 1413 IIEFMTLHSVLDGL 1426



 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 34/80 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L  H++ S ++     + +     +  Q A+A+TDT N+    E S      G++ I 
Sbjct: 331 IELHAHTNMSAMDAVTDFSGVAKLAKSWGQTALAVTDTGNVQGFPEASAAGAKNGLKMIY 390

Query: 72  GCQLDIDMQDNLKMTNQGKT 91
           G + ++         N  +T
Sbjct: 391 GMEANLVEDGEPIGFNLDQT 410


>gi|313905074|ref|ZP_07838444.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
 gi|313470144|gb|EFR65476.1| DNA polymerase III, alpha subunit [Eubacterium cellulosolvens 6]
          Length = 1536

 Score =  201 bits (512), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 150/949 (15%), Positives = 289/949 (30%), Gaps = 204/949 (21%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F +      I       LD+D  +     NQ          +++L    EG   L   
Sbjct: 658  VKFVEMLKERNI-------LDLDALNKEGSVNQNAIRKMKSHHVIILAKNEEGRVNLYRC 710

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  +L     +  ++  S+++E   EGLI+ +   +G + +A    +      R++ F 
Sbjct: 711  VSESHLK-YFNRQAKLPRSFIEE-HREGLIIGSACVAGELYQALLRGAPDAEIARIVNFY 768

Query: 176  KLFGDRLYVNLQRHR-----------------GYDRYRESQVVQLAYTHELPLVATNNSL 218
                   Y+ +Q                       +    ++V+L      P+VAT +  
Sbjct: 769  D------YLEIQPLGNNAFLIEDEKNPAVTCMEDLQEINRKIVKLGEQFHKPVVATCDVH 822

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            F+  ED     ++MA          D  +  P         +           E   E+ 
Sbjct: 823  FMDPEDEIYRRIIMAGKK-----FADADKQEPLFLRTTEEMLAEFE---YLGSEKAREVV 874

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
               +  +      +     K+C  +  + +  LR                      ++  
Sbjct: 875  IENTQKIADMVEKISPIYPKKCPPVIPKSDEMLRTICERKAHEIYGPDL------PEEVS 928

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             RL+ EL  I    ++  ++I    +    ++   VG  RGS   S  A    IT+++PL
Sbjct: 929  ARLERELTSIISNGYAVMYIIAQKLVWKCNEDGYLVG-SRGSVGSSFAATMSGITEVNPL 987

Query: 399  R-----------------------------------------------FSLLFERFLNPD 411
                                                            F++ FE FL   
Sbjct: 988  PPHYLCHHDYHVEFNTPDVEKYRKMGYSGCDMPDKECPVCGKLMDKIGFNIPFETFLGFA 1047

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
                PD D++F  + + +   Y    +G  +  +  T G+L  K A   V    +     
Sbjct: 1048 GNKEPDIDLNFSGEYQTKAHAYTSVIFGDGQTFKAGTIGTLADKTAFGFVKNYYE----- 1102

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                                          R        +  I +   G+ R    H  G
Sbjct: 1103 -----------------------------ERGIHKRTCEIDRIVKGCVGIRRTTGQHPGG 1133

Query: 532  IV--IGDRPLSQLVPMYRDVRSDL--PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            I+       ++ + P+           ++         + L+K D LG    T+++   D
Sbjct: 1134 IIVLPVGMDINTITPVQHPADDPNSDIISTHFDYHSIDSNLLKLDILGHDDPTMIRMLED 1193

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLLTTKGTL------------GIFQLESSGMRQALEGM 635
               +   K+ L          +  L+                 GI +  +S   Q L   
Sbjct: 1194 LTGEDATKIPLD--EPKVMSLFQNLSALNLQPSDIRGIKLGTLGIPEFGTSFAMQMLFDT 1251

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
            +P    D+  +  L     +                      +    K T G  I     
Sbjct: 1252 KPQNFTDLCRISGLSHGTDVYLGNA---------------ETLIKEGKCTLGTAICCRDD 1296

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKI-KEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            + +  +  G    E+  +   + K I  + + K+   +I    ++G+      +  ++  
Sbjct: 1297 IMVYLINRGMDSEESFSIMEKVRKGIIAKGVCKEWPDWIKDMKEHGVPDWYIWSCEKI-- 1354

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE------------------- 795
                Y F K HA AY +++Y+  W K + P+ + AA  ++                    
Sbjct: 1355 ---KYMFPKGHAVAYVMMAYRVGWFKVYKPLAYYAAFFSIRAKAFSYEKMCQGRQHLEQI 1411

Query: 796  --------------MDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNRIYYSLA 840
                            +        ++     ++ MP  +       F++ D ++  SL 
Sbjct: 1412 MDEYNSRKDQLSKMEQDQYTDMCLVEEMYARGLEFMPIDIYRVQPHRFQIIDGKLMPSLD 1471

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            AI G+G+  A  I  A+ D  F S +D   R    K+ + + ++L   G
Sbjct: 1472 AIDGLGSVAADSICLAARDGKFLSKDDLRQR---GKVGKSITDTLDRLG 1517



 Score = 75.2 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 39/131 (29%), Gaps = 28/131 (21%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA------- 64
           V L  H+  S ++G   +  ++ +      PAIAITD   + +  + + +          
Sbjct: 392 VELHCHTKMSDMDGVSDVRRLVKRAYQWGMPAIAITDHGVVQAFPDANHEMEDIDGAYRK 451

Query: 65  ------------------AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA 106
                             A  + I G +  +        T+            V+     
Sbjct: 452 KYAAEHPDATKDELKKVSAPFKVIYGMEGYLVDDMKGIATDSRGQSLDDNY--VVFDIET 509

Query: 107 EGYQRL-IELV 116
            G   L  +++
Sbjct: 510 TGLSNLTCKII 520


>gi|257463693|ref|ZP_05628083.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
 gi|317061240|ref|ZP_07925725.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
 gi|313686916|gb|EFS23751.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
          Length = 1450

 Score =  201 bits (512), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 151/907 (16%), Positives = 302/907 (33%), Gaps = 179/907 (19%)

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            I     ++      T      +I+LL    +G + L  LVS  +L   G +  R+  S L
Sbjct: 592  ITKLSEMQEAFPVNTKKQNTRNIMLLAKNRQGLENLNRLVSDAHLYHFGNRKPRVLKSTL 651

Query: 137  QEIGTEGLIM---LTGGS--SGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYVN---- 185
            ++   EGL++   LTG S     +   +   +     +++  +   +L   + Y      
Sbjct: 652  KKY-REGLLVGCSLTGHSINDSELFHDYSTGNIDRIPEKISFYDYIELLPRQAYAENIEY 710

Query: 186  ----LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVS 241
                L     Y          LA    + +  ++N  +L  E+ +   +L+  +     +
Sbjct: 711  NGTGLISGNSYIEAMNQYFYSLAKEKGILVTGSSNVHYLDPEEAKIRTILLYGSGMVHGA 770

Query: 242  QKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
            +  +                  +     A E  VE   +    ++V  PI   F      
Sbjct: 771  KAYKTDNGFYFRSTGELLKEFSYLGEEVAKEIVVENTNKIVEEVEVIKPIPDGFYPP--- 827

Query: 302  DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
               +  E  +R                      +   +RL+ ELN I    FS  +L   
Sbjct: 828  -SIENAEETVREMTYEKAYRIYGNPL------PEIVAKRLERELNAIIGNGFSVLYLSAQ 880

Query: 362  DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------- 399
              ++ +  N   VG  RGS   S+ A+ + IT+++ L                       
Sbjct: 881  KLVKKSLDNGYLVG-SRGSVGSSLVAFMMGITEVNALYPHYICTNPDCKHSEFIEREGVG 939

Query: 400  -------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
                               +S+ FE F+  +   +PD D++F  + + E+ RY +  +G 
Sbjct: 940  IDLPEKRCPKCNQIYKRDGYSIPFEVFMGFNGDKVPDIDLNFSGEYQSEIHRYCEELFGK 999

Query: 441  ERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFRE 500
            E V +  T  +L  K A   V +     Y + + +                         
Sbjct: 1000 ENVFKAGTISTLAEKNAAGYVRK-----YFEDNGIAISQAE------------------- 1035

Query: 501  ARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRSDL---PV 555
                      ++ +++K EG  +    H  G+V    D  + +  P+ +    ++     
Sbjct: 1036 ----------VVRLAKKCEGAKKTTGQHPGGMVVVPSDHNIFEFCPVQKPANDEMSDSIT 1085

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
            T ++   +++  L+K D LG    T ++     L Q    +D+  IP  D +T  + +  
Sbjct: 1086 THYDYHVMDE-QLVKLDILGHDDPTTIK-----LLQEYTGLDIYEIPLSDPDTLKIFSGT 1139

Query: 616  G--------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
                           T GI +  +  +RQ L   +P    +++ +  L            
Sbjct: 1140 ESLGVTAEQIGSEVATFGIPEFGTPFVRQMLLDTRPTTFAELVRISGLSHG-------TD 1192

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
                N +E I      +  ++     ++ Y            G     A  +   + K  
Sbjct: 1193 VWLNNAQEFIRQKQATLSEVITVRDDIMNYLID--------QGIEKGTAFKIMEFVRKGK 1244

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              +  +  +++     +  +      +   +      Y F K HA AY +++ + A+ K 
Sbjct: 1245 PSKDPEGWKKYSDLMKEKHVKDWYIESCRRI-----KYMFPKGHAVAYVMMAIRIAYFKV 1299

Query: 782  HYPVEFLAASMTLEMDNVE-------------------------------KIKKFCQDAR 810
            HYP+ F AA ++ + ++                                  + +   +  
Sbjct: 1300 HYPLAFYAAYLSRKAEDFNFETLGTPERARNRLEELSKEGKLDVKKKAEQALCEVMIEME 1359

Query: 811  QFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
              +I+++P  +       F V  ++I   L A+ G+G     +I+E    + F S+EDF 
Sbjct: 1360 ARHIELLPIDLYHSAGKKFLVEGDKIRVPLIALAGLGGAVIDNILEERQKESFISVEDFK 1419

Query: 870  SRVDSKK 876
             R    +
Sbjct: 1420 KRTKVSQ 1426



 Score = 86.8 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 38/91 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS  S + G   +++I+ +       A+AITD   + S     + A   G++ I+
Sbjct: 337 VELHTHSKMSEMVGVTEVSDIIKRAKQYGHSAVAITDYGVVHSFPAAHKAASENGLKAIL 396

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           GC+  +       + N  +       S V+ 
Sbjct: 397 GCEAYMVDDTLAMVHNLQEDQELEKASFVVY 427


>gi|37784576|gb|AAP47639.1| DnaE precursor [Aphanothece halophytica]
          Length = 255

 Score =  201 bits (512), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 124/224 (55%), Gaps = 11/224 (4%)

Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             A   FNKSH+ AY+ ++YQTA++K +YPVE++AA +T   +N +KI+K+    R+ NI
Sbjct: 32  CVASNCFNKSHSTAYSYVTYQTAYLKANYPVEYMAALLTASSNNTDKIEKYIDTCRRMNI 91

Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS--ADKPFDSLEDFCSRV 872
            + PP +N   +DF   + +I + L+A++ +G     +I+ A   A   F SL D C+R+
Sbjct: 92  DVEPPDINRSQIDFTPDNEKILFGLSAVRNLGQGAIENILAAREEAGGTFTSLADLCARI 151

Query: 873 DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
           D   +NRR LE+L++ GA D    +R QLL  L+ +  +AQ   K++ +   N+F     
Sbjct: 152 DLHTVNRRALEALIYCGAFDKINSNRNQLLHDLEPVLSWAQSRAKDKASGQTNLFEALNS 211

Query: 933 TFSDK---------ITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
           +  +           T       +++ + ++E+ +LGFY   HP
Sbjct: 212 SQEEDHNRSDYKDVPTASPVEDFSATDKLKHEKDLLGFYVXXHP 255


>gi|81428867|ref|YP_395867.1| DNA polymerase III PolC [Lactobacillus sakei subsp. sakei 23K]
 gi|123564054|sp|Q38W73|DPO3_LACSS RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|78610509|emb|CAI55560.1| DNA-directed DNA polymerase III, polC-type [Lactobacillus sakei
            subsp. sakei 23K]
          Length = 1446

 Score =  201 bits (511), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 142/878 (16%), Positives = 277/878 (31%), Gaps = 159/878 (18%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
              VL+  T  G + L +LVS   + +   ++ R+  S L  +  EG+++ +  S+G +  
Sbjct: 617  HAVLMAQTQAGLKNLFKLVSAS-MTEYYYRTPRLPKSKLDAL-REGILVGSACSNGEVFE 674

Query: 158  AFFFNSSQVAEKRLL--TFKKLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELP 210
            A        A  R     + ++    +Y       L R           +V++      P
Sbjct: 675  AMMQKGYNEALDRAKYYDYIEVMPKAVYAPLLERELVRDNRALEEIIRNLVKVGEKLNKP 734

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
            +VAT ++ +L+ ED     +L+           +    +    +  RS    + +     
Sbjct: 735  VVATGDAHYLNPEDAIYRKILIHSMGG-----ANPLNRSKLPDVHFRSTDEMLTAFDFLG 789

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
             E   E+       +      +    +K         E+E++   +              
Sbjct: 790  PELAQELVVANPQKIADQIDEIVPVKDKLYTPKMAGAEDEIQTLTMNRAHELYG------ 843

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                +    RL  EL  I    FS  +LI    +  + K+   VG  RGS   S+ A   
Sbjct: 844  AELPEIVEARLKKELKSIIGNGFSVIYLISQKLVYKSGKDGYLVG-SRGSVGSSLVATMT 902

Query: 391  TITDIDPLR-----------------------------------------FSLLFERFLN 409
             IT+++PL                                            + FE FL 
Sbjct: 903  GITEVNPLPPHYRCSNCHYSEFFTKGEVGSGYDLADKDCPECGTPLDKDGHDIPFETFLG 962

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
                 +PD D++F  D +     Y +  +G   V +  T G++  K A   V +A +   
Sbjct: 963  FHGDKVPDIDLNFSGDYQPVAHNYTKVLFGENNVFRAGTIGTVADKTAYGYV-KAYERDT 1021

Query: 470  SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
             Q  R  +                                 +  +++   G+ R    H 
Sbjct: 1022 EQTFRGAE---------------------------------VDRLAKGSTGVKRTTGQHP 1048

Query: 530  AGIV--IGDRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQK 584
            AGI+       +    P+             T F+   I        + L L  L     
Sbjct: 1049 AGIIVVPDYMDIYDFTPIQFPADDQDAAWKTTHFDFHSIHD------NILKLDILGHDDP 1102

Query: 585  SLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIED 642
            ++  + Q    +D   IP DD     L +   +LG+   Q+ S      +       +  
Sbjct: 1103 TMIRMLQDLSGIDPKSIPTDDPGVMALFSGTDSLGVTPEQINSKMGTLGVPEFGTRFVRG 1162

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLL 702
            ++       P     ++  +   +G +  +     +      T   +I     + +  + 
Sbjct: 1163 MLEET---HPTTFSELLQISGLSHGTDVWLGNAEELINKGVVTLKDVIGCRDNIMMDLIH 1219

Query: 703  SGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
             G   S +  +   + K      D     +      N       ++    +     Y F 
Sbjct: 1220 WGMDDSMSFNIMERVRKGKGIPDD-----WQQAMRDNENVPDWYIDSCLKI----KYMFP 1270

Query: 763  KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK------------------ 804
            K+HA AY +++ + A+ K ++P+ +  A  ++   + + +                    
Sbjct: 1271 KAHATAYILMALRIAYFKVYFPIIYYCAYFSVRASDFDLVAMAQGKEGVKARMKEITDKG 1330

Query: 805  ---------------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYY-SLAAIKGVGT 847
                              +  +  I I    +      DF + D+        A+  +G 
Sbjct: 1331 MEASTKEKNLLTVLEIANECLERGITIKMVDIEKSDSSDFLIQDDHTLLAPFRAVPSLGD 1390

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
              A+ I+ A  +KPF S ED  +R    K+++ ++E L
Sbjct: 1391 NVAKQIVSAREEKPFLSKEDLSNR---GKVSKTLIEYL 1425



 Score = 85.6 bits (210), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 40/90 (44%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + + +H++ S ++    + + + + A   QPAIA+TD  NL +  +        G++ + 
Sbjct: 339 IEMHLHTNMSQMDATNPIGDYVKQAAKWGQPAIAVTDHYNLQAFPDAYAAGKKNGVKILY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G ++++       + N       +   ++ 
Sbjct: 399 GVEVNLVNDGTPVVYNLRDQVLESAEYVIF 428


>gi|323466335|gb|ADX70022.1| DNA polymerase subunit III [Lactobacillus helveticus H10]
          Length = 1436

 Score =  201 bits (511), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 139/886 (15%), Positives = 274/886 (30%), Gaps = 195/886 (22%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                + +L    +G + L +LVS     D   +  R   S L  +  EGL   +G   G 
Sbjct: 608  RPSHMTVLAKDQKGLKNLYKLVSIASTKD-FYRIPRTPKSDLARLH-EGLFYGSGCWQGD 665

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQ------------ 202
            +  A        A ++   +        ++ +Q    Y +  E  +++            
Sbjct: 666  VFIAMMQKGYDEAREKAKFYD-------FLEVQPPANYSQLIEDGLIKDEAQLEDIIRNI 718

Query: 203  --LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
              L      P+VAT ++ ++   D     +L++   S     K +P +      +     
Sbjct: 719  YKLGKELNKPVVATGDAHYVEPHDAIYRTILISAQRSNPNRNKPQPDLHFYSTQEMLDAF 778

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
              +  D+  A E  ++   + ++ +    PI                + E++        
Sbjct: 779  SFLGEDI--AKEIVIDNTNKIAYEISEIQPIKDGLYPPHIAH----ADEEMKKLTYDKAY 832

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                +         +  + R+D ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 833  ELYGKPL------PKIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 885

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 886  VGSSLVATMSGITEVNPLAPHYRCPKCKYSQFFENGEYGSGFDLPDKACPKCGTQLVKDG 945

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + F  FL      +PD D++F  D +     +++  +G +   +  T  ++  K A  
Sbjct: 946  QDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPDNSYRAGTIATVADKTAYG 1005

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                                                  F E R        L  ++  + 
Sbjct: 1006 YA----------------------------------KHFDEERDLKARNAELDRLASGIR 1031

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGIV+      +    P+            +T ++   I    ++KFD L
Sbjct: 1032 GVKRTTGQHPAGIVVVPDDMDIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDIL 1090

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGI 620
            G    T+++       Q    +D   IP DD     L ++                TLG+
Sbjct: 1091 GHDDPTMIRH-----LQDLSGIDPLTIPPDDPGVMSLFSSPKILGVTPEQIQSETGTLGV 1145

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +R  LE  +P    +++ +  L                N ++ + +    +  
Sbjct: 1146 PEFGTRFVRGMLEETKPTTFAELLQISGLSHG-------TDVWLGNAEDLVNNGTCKLKD 1198

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            ++     ++        +  +  G     A     ++        +       +    + 
Sbjct: 1199 VIGCRDNIM--------MDLIHWGVKPEVAFSTMESVRHGRGISDENMAILKKNKNIPDW 1250

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
               +              Y F K+HA AY +++ + AW K +YP  +  A  ++  D  +
Sbjct: 1251 YIPSCLKI---------KYMFPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLFD 1301

Query: 801  KIKK---------------------------------FCQDARQFNIQIMPPSVNTPCV- 826
             +                                      +  +  I+I    ++     
Sbjct: 1302 LVAMSHGKNTVKAAMKEIQDKGNDASAKDKSLLTVLEIANECLERGIKIKMVDIDQSEAT 1361

Query: 827  DFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            DFK+   + I     A+ G+G   A+ I+ A A+K F S ED   R
Sbjct: 1362 DFKILDKHTILAPFNAVPGLGDNAAKQIVAARAEKKFLSKEDLAKR 1407



 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 38/90 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   + ++ +       Q AIAITD  ++ S  E      A G + + 
Sbjct: 333 VELHLHTNMSQLDATNAPSDFIKTAKKFGQKAIAITDHGDVQSFPEAYSTGKATGTKILY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 393 GVEANMIDDHALLVINPAPMTYEDREFVIF 422


>gi|222833094|gb|EEE71571.1| predicted protein [Populus trichocarpa]
          Length = 499

 Score =  201 bits (511), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 153/498 (30%), Positives = 240/498 (48%), Gaps = 30/498 (6%)

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
            +  YFL V D +++A+  +I    GRGS A SV  + L IT +DP   +LL  RF++ +
Sbjct: 3   GYEMYFLTVHDIVRFARSQDIL-CQGRGSAANSVVCFCLGITAVDPTLQTLLIARFISRE 61

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
           R   PD D+DF   RR+ VI+Y+  KYG  R A        + + ALRD G+AL +    
Sbjct: 62  RSEPPDIDVDFEHARRETVIQYIYEKYGRGRAALTAVVSCWRTRGALRDAGKALGVDAVL 121

Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREAR----------------------LADPSVD 509
           +D + +                 +                             L+     
Sbjct: 122 IDAMARQHHWFSDAEDQAAEPEPEPDDPALGWVRSKLLRLARLRERLGDDCPQLSPQRAR 181

Query: 510 RLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLI 569
             LE++ +L    RH S H  G V+ D PL++LVP+         V Q++   ++   L+
Sbjct: 182 LWLELALQLRDSPRHLSQHVGGFVLTDGPLTRLVPVEPAAMEGRSVIQWDKDDLDTMNLL 241

Query: 570 KFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGM 628
           K D L L  LT+L+ SL   A  RG + +L+ IP +D  TY ++    T+G FQ+ES   
Sbjct: 242 KVDVLALGMLTVLRGSLHARAALRGPRWELADIPKEDAATYDMICRADTVGTFQIESRAQ 301

Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIV-----SIHPLIDPMLK 683
              L  ++P    D++  V++ RPGPI   +V+   +  + +          P ++  LK
Sbjct: 302 MSMLPRLRPRVFYDLVVEVAIVRPGPIQGGMVHPYLQARERRRQGGELVLEKPALEKALK 361

Query: 684 ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGIS 742
            T GV I+QEQVMQIA + + +S  +AD LRR+M     K  + + +   I G   NG S
Sbjct: 362 RTLGVPIFQEQVMQIAMIAANFSAGDADELRRSMAAWRRKGGVHRFERPLIDGMLANGYS 421

Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
              A  IF  +  F +YGF +SHA ++A+++Y +AW+K H P  FL A +  +       
Sbjct: 422 AEFAQAIFRQMLGFGEYGFPESHAYSFAMLAYASAWLKRHEPACFLMALLNAQPMGFYTP 481

Query: 803 KKFCQDARQFNIQIMPPS 820
            +  QDAR+  ++++P  
Sbjct: 482 SQLIQDARRHGVRVLPVD 499


>gi|162447117|ref|YP_001620249.1| DNA polymerase III subunit alpha [Acholeplasma laidlawii PG-8A]
 gi|161985224|gb|ABX80873.1| DNA polymerase III alpha subunit [Acholeplasma laidlawii PG-8A]
          Length = 1504

 Score =  201 bits (511), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 148/926 (15%), Positives = 293/926 (31%), Gaps = 147/926 (15%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
              ++Q +L M    + P P      +L  T EGY+ L +LVS   L        R+  S 
Sbjct: 603  YFELQASLDMNEVWRHPIPKYA--TVLAQTQEGYKNLFKLVSDA-LTTHFDGGPRLLKSA 659

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-----HR 190
              +   EGL++ +G     +  A    + +  ++ +  +        Y+ +Q      H 
Sbjct: 660  FLKY-REGLLIGSGTEHSEVFEAALNLNDEQLKEAISFYD-------YIEVQPLNAYLHL 711

Query: 191  GYD---------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH--STV 239
              +         +    +++  A      ++A++N+ +L+ ED +  ++ +        +
Sbjct: 712  EKEIGALGREVIQAAIKKIITYAKEQNKIVIASSNAHYLNPEDKKYREIYIQTKSVGGGL 771

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                +       H L     + +      +     V         +  +    P+ +   
Sbjct: 772  HPLANYETSPDQHLLTTTEMLDAFSFLDQQTAYEIVVTNTNKLSDMFENVRAFPKELYSI 831

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             D   K+       K      V      +           R+  EL  I   +F+  + I
Sbjct: 832  KDHAFKDTLGIPSIKEHVEEMVMNEAKRLYGDPIHPYVLGRVQRELTNIIDNQFAPIYFI 891

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER------------- 406
                ++ +  +   VG  RGS   S+ A  + IT+++PLR     ++             
Sbjct: 892  SHLLVKKSLDDGYLVG-SRGSVGSSLVATLMNITEVNPLRPHFRCKKGEYAVFKLTDEEI 950

Query: 407  ----------------FLNPDRMSMPDFDIDFCQDRRDEVIR----YVQNKYGHERVAQI 446
                                    +PD     C +   +            +  +++  I
Sbjct: 951  YEQGVDARDEPFIEVLKHVKSGYDLPDMKCPICGELMHKDGHDIPFETFLGFDGDKIPDI 1010

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
                S   ++   D  R L                +        A      + E    D 
Sbjct: 1011 DLNFSGDYQSKAHDYVRELLGEEYTFRAGTIQTVAERN------AFGYVKGYLEYLGKDA 1064

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVRS---DLPVTQFNMK 561
                +  +++ +EG+ R    H  GIV+  +   +  + P+             T F+  
Sbjct: 1065 RSAYIERLAKGIEGVKRSTGQHPGGIVVVPKDKSIYDVTPIQYPADDVNSAWKTTHFDYH 1124

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL---SLIPFDDHETYHLLTTK--- 615
              E   L+K D LG    T+++  +D++ +            IP DD   Y L       
Sbjct: 1125 AFED-NLLKLDILGHDDPTMIKFLMDYVKEHPEDFPFDNAQDIPLDDPNVYRLFQDTSVI 1183

Query: 616  ------------GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR--PGPIDNIVVY 661
                         +  I +  +   RQ L+  +P     ++ +  L       + N    
Sbjct: 1184 GLKDKDDVYGDIASYAIPEFGTPFTRQMLQQTRPSTFAGLVKISGLSHGTDVWLKNSQEL 1243

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
                    KI                +I  ++ +M       G   ++A  +   + K  
Sbjct: 1244 VLGSTQFGKISF------------DDIIGCRDDIMVELSD-RGMKEAKAFEIMEFVRKGK 1290

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
                 K+   + +    + I        +   A    Y F K+HA AY +++ + AW K 
Sbjct: 1291 PSSNPKKWAEYENEMKASKIPD-----WYIWSASQIKYMFPKAHATAYVIMAMRIAWFKV 1345

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQ--------------------------------DA 809
            + P+ F ++  +      E                                       + 
Sbjct: 1346 YSPLLFYSSFFSKRAVQFEHDIMVAGTNAIRNRINTLRNDNNITAKDQDVIVTLLVALEM 1405

Query: 810  RQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
             +   + +P ++      +F +  N +    ++I G+G   A +I+E   +KP++S ED 
Sbjct: 1406 TKRGFKFLPVNIKKSHAKEFVMEKNGLRMPFSSIDGLGLQAAINIVENREEKPYNSKED- 1464

Query: 869  CSRVDSKKLNRRVLESLVFAGALDCF 894
             +RV  K LN+ V E L  AGA D  
Sbjct: 1465 -ARVRGK-LNKTVFERLDLAGAFDDL 1488



 Score = 76.4 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 35/81 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+  S ++   S+ + ++ + +    A AITD N L++  E  +      I+PI 
Sbjct: 324 VEFHIHTKASPMDAVTSITDYVETLESWGHKAFAITDRNGLYAYPELHKAIKGKKIKPIY 383

Query: 72  GCQLDIDMQDNLKMTNQGKTP 92
           G QLD    +   +       
Sbjct: 384 GVQLDYVDDEAFWVAKDYHED 404


>gi|227510250|ref|ZP_03940299.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis ATCC
            27305]
 gi|227189902|gb|EEI69969.1| DNA polymerase III PolC [Lactobacillus brevis subsp. gravesensis ATCC
            27305]
          Length = 1438

 Score =  201 bits (511), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 141/898 (15%), Positives = 287/898 (31%), Gaps = 167/898 (18%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
              + N  MT             V++     G + + ++VS    +D   +  R+  + L+
Sbjct: 591  HDELNDHMTENDAYKHARPSHAVIIAKNQVGLKNMFKIVSLSN-VDYFFRVPRVPRTQLE 649

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--------- 188
            +   EG+I+ +  SSG +  A        A K+   +        Y+ +Q          
Sbjct: 650  KF-REGIIVGSACSSGEVFTAMMQKGMDEARKKAGFYD-------YLEVQPKRAYAPLIE 701

Query: 189  -HRGYD----RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             H   D        + +V+L    + P+VAT +  +L+ +DY    +L+           
Sbjct: 702  SHLISDEANLEEILTNIVKLGDELKKPVVATGDVHYLNPQDYIYRKILINSQGGA-NPLN 760

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             +          N       F    +A E  V    R +  +    P+  R    + +  
Sbjct: 761  RQELPDLHFLTTNEMLDDFAFLGAEKAKEIVVTNTNRIADDIDDVHPLKDRLYTPKMEG- 819

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                E+E++ + +                  +    RL  EL  I    FS  +LI    
Sbjct: 820  ---SEDEIKERTMTTAHQWYGDPL------PKIVDDRLTTELKSIIGNGFSVIYLIAQRL 870

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------ 399
            +  + K+   VG  RGS   S+ A    IT+++PL                         
Sbjct: 871  VAKSNKDGYLVG-SRGSVGSSLVATLTGITEVNPLPPHYRCPNCQHTEFFTKGEYSSGYD 929

Query: 400  -----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
                              ++ FE FL      +PD D++F  D +     Y +  +G + 
Sbjct: 930  LPRKKCPECGTQMIGDGHNIPFETFLGFTGNKVPDIDLNFSGDYQPIAHNYTKVLFGEKN 989

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            V +  T G++  K A   V +A +       R                   ++ R     
Sbjct: 990  VFRAGTIGTVADKTAYGYV-KAYERDKGTTYRQA-----------------EEDRL---- 1027

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
                        ++   G+ R    H AGI  V  D  +    P+      D     +  
Sbjct: 1028 ------------AKGATGVKRTTGQHPAGIIVVPADMDIYDFTPIQYPA--DDQTAAWKT 1073

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
               +   +   + L +  L     ++  + Q    ++   IP DD     + ++   LG+
Sbjct: 1074 THFDFHSIH-DNILKIDILGHDDPTMIRMLQDLSGINPKSIPMDDPGVMSIFSSPKILGV 1132

Query: 621  F--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
               Q++S      +       +  ++       P     ++  +   +G +  +     +
Sbjct: 1133 SEEQIQSKTGTLGVPEFGTRFVRGMLEQT---HPSNYSELLQISGLSHGTDVWLGNADEL 1189

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
                  T   +I     +    +  G     +  +  ++        D     +     K
Sbjct: 1190 IKNGTATIANVIGCRDNIMTDLIQWGLDSELSFQIMESVRHGRGIPDD-----WQEEMRK 1244

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
              I +    +  ++      Y F ++HAAAY +++ + A+ K ++P+ + AA  ++  D+
Sbjct: 1245 AKIPEWYIDSCLKI-----KYMFPRAHAAAYILMALRIAYFKVYFPLIYYAAYFSVRADD 1299

Query: 799  VEKIKK---------------------------------FCQDARQFNIQIMPPSVNTPC 825
             + +                                      +  +         +    
Sbjct: 1300 FDIVSMCRGKDAVKNAMKQINDKGMEASTKEKNLLTVLELANEMLERGYVFKMVDLKKSA 1359

Query: 826  VD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
             + + +  N +     ++ G+G   A+ I+ A  DKPF S ED   R    K+++ ++
Sbjct: 1360 ANQWLIDGNNLIAPFNSVPGLGLNVAKQIVAAREDKPFISKEDLSKR---GKVSKTLI 1414



 Score = 82.5 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+S S ++   ++ +   +  A   PA+AITD   +    +         ++ + 
Sbjct: 333 VELHLHTSMSQMDATNNIADYAKQAKAWGHPALAITDHAAVQGFPDAFHAGQKNDLKMLY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G ++++         N    P      +V 
Sbjct: 393 GVEINLVDDGVPITYNDKHIPLKDATYVVF 422


>gi|224540943|ref|ZP_03681482.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM
            15897]
 gi|224526094|gb|EEF95199.1| hypothetical protein CATMIT_00094 [Catenibacterium mitsuokai DSM
            15897]
          Length = 1444

 Score =  201 bits (511), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 142/949 (14%), Positives = 292/949 (30%), Gaps = 198/949 (20%)

Query: 64   AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
              G + I          +   +  +          + +L  T EG + +  LVS      
Sbjct: 571  KKGFKTI---------DEVNDIEIEESYKHAFPYHMCVLAKTPEGLKNMFRLVSIANTK- 620

Query: 124  QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
               Q  RI  S L E   EGL+  +G  +  +         +   + +  +        Y
Sbjct: 621  YFHQCDRIPRSEL-EFYREGLLFGSGCVNSKVFEIASTRDEEELREEIKFYD-------Y 672

Query: 184  VNLQR------------HRGYD--RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            + +Q             +   D       +++++A   +  + AT +  FL + D    +
Sbjct: 673  IEIQPLEDAMYLVDRGKYESIDDIERIYKRIIKIAKEEKKLICATGDVHFLDKRDKVYRE 732

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS------F 283
            V +  +   +  +     V  +         +    ++ E      +             
Sbjct: 733  VFITNSKIQINGKPHPLLVRNNPRALTPDVYLRTTDEMLECFPYLSDEETYEYVVTNTNK 792

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            +  +    +    E       +  + +LR            +         +    RL+ 
Sbjct: 793  VADMIGDDIIVTKEGLYPPSIENVDVKLRELCHKNAHATYGE------VLPEIVSARLEK 846

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---- 399
            EL+ I +  F+  + I ++ ++ + +    VG  RGS   S  A    I++++PL     
Sbjct: 847  ELSNIIKHGFAVIYFIASELVRVSNEAGYLVG-SRGSVGSSFVATMAGISEVNPLAPHYI 905

Query: 400  -------------------------------------FSLLFERFLNPDRMSMPDFDIDF 422
                                                  ++ FE FL  +   +PD D++F
Sbjct: 906  CPHCKHNEFLDEGVISDGYDLPDKNCPVCGHKMKGEGHNIPFETFLGFNADKVPDIDLNF 965

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              + + +   Y +  +G + V +  T  ++  K A     +A        D +       
Sbjct: 966  SGEYQPKAHAYTKTIFGEDHVFRAGTISTVAEKTAYGY-AKAYAENLGLEDNI------- 1017

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS-- 540
                         +  +               +    G+ R    H  GI++    +   
Sbjct: 1018 -----------RSAELQRL-------------ANGCTGVKRTTGQHPGGIIVIPNDMEVF 1053

Query: 541  QLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF--------- 588
               P          +   T F+   I    ++KFD LG    T+++   D          
Sbjct: 1054 DFTPYQYPADDVNAEWRTTHFDFHKIHD-NVLKFDILGHVDPTVIRMLQDMTGVDPKSIP 1112

Query: 589  -LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
               Q+ + +  S        ++ L    G LG+ +  +  +R  LE   P C  +++ + 
Sbjct: 1113 TNDQKVMSLFNSSKALGCDLSF-LNCKTGALGLPEFGTKFVRGMLEQTHPTCFNELVIIS 1171

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             L                N +  I S    +  ++     +++Y         +  G   
Sbjct: 1172 GLSHG-------TDVYLGNAETLIKSGTCTLQEVIGCRDDIMVYL--------IEKGLPN 1216

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             +A  +   + K    ++  QK  ++    K+ + +    +  ++      Y F K+HA 
Sbjct: 1217 KDAFDIMECVRKGKSPKVFPQKG-YVELMKKHNVPQWYIDSCLKI-----KYMFPKAHAV 1270

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK---------IKKFCQDARQFNIQIMP 818
            AY + + + AW K +YP E+ A   T   D  +          +    Q+  +   +   
Sbjct: 1271 AYVLSAIRVAWWKLYYPREYYAVYFTTRCDFYDIETLIAGKEAVFDKYQECLKLKAEHKA 1330

Query: 819  PSVNTPCVD-FKV-----------------------------GDNRIYYSLAAIKGVGTT 848
             +     +  F+V                                 I     +I G+G  
Sbjct: 1331 SNKEEGLITVFEVALEMFERGLKFSKISLEQSDSRKFICNPDDPTAIIPPFTSIDGLGDA 1390

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
                ++EA  ++PF S+ED   R          +E+L   G L+ F  S
Sbjct: 1391 VGDSVVEARKERPFTSIEDIKKRTRLSG---THIETLQKMGVLNGFSES 1436



 Score = 84.8 bits (208), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S ++G  S+ + + + +     AIA+TD  N+ S  +  Q A    ++ I 
Sbjct: 319 VELHCHSNMSTMDGIASVGSYIKRASEWGMKAIAVTDHGNVQSFPDA-QAAAGDKLKMIY 377

Query: 72  GCQLDIDM 79
           G ++++  
Sbjct: 378 GIEMNMID 385


>gi|161507686|ref|YP_001577640.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
 gi|160348675|gb|ABX27349.1| DNA polymerase [Lactobacillus helveticus DPC 4571]
          Length = 1438

 Score =  201 bits (510), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 139/886 (15%), Positives = 273/886 (30%), Gaps = 195/886 (22%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                + +L    +G + L +LVS     D   +  R   S L  +  EGL   +G   G 
Sbjct: 610  RPSHMTVLAKDQKGLKNLYKLVSIASTKD-FYRIPRTPKSDLARLH-EGLFYGSGCWQGD 667

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQ------------ 202
            +  A        A ++   +        ++ +Q    Y +  E  +++            
Sbjct: 668  VFIAMMQKGYDEAREKAKFYD-------FLEVQPPANYSQLIEDGLIKDEAQLEDIIRNI 720

Query: 203  --LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
              L      P+VAT ++ ++   D     +L++   S     K +P +      +     
Sbjct: 721  YKLGKELNKPVVATGDAHYVEPHDAIYRTILISAQRSNPNRNKPQPDLHFYSTQEMLDAF 780

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
              +  D+  A E  ++   + +  +    PI                + E++        
Sbjct: 781  SFLGEDI--AKEIVIDNTNKIADEISEIQPIKDGLYPPHIAH----ADEEMKKLTYDKAY 834

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                +         +  + R+D ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 835  ELYGKPL------PKIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 887

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 888  VGSSLVATMSGITEVNPLAPHYRCPKCKYSQFFENGEYGSGFDLPDKACPKCGTQLVKDG 947

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + F  FL      +PD D++F  D +     +++  +G +   +  T  ++  K A  
Sbjct: 948  QDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPDNSYRAGTIATVADKTAYG 1007

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                                                  F E R        L  ++  + 
Sbjct: 1008 YA----------------------------------KHFDEERDLKARNAELDRLASGIR 1033

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGIV+      +    P+            +T ++   I    ++KFD L
Sbjct: 1034 GVKRTTGQHPAGIVVVPDDMDIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDIL 1092

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGI 620
            G    T+++       Q    +D   IP DD     L ++                TLG+
Sbjct: 1093 GHDDPTMIRH-----LQDLSGIDPLTIPPDDPGVMSLFSSPKILGVTPEQIQSETGTLGV 1147

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +R  LE  +P    +++ +  L                N ++ + +    +  
Sbjct: 1148 PEFGTRFVRGMLEETKPTTFAELLQISGLSHG-------TDVWLGNAEDLVNNGTCKLKD 1200

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            ++     ++        +  +  G     A     ++        +       +    + 
Sbjct: 1201 VIGCRDNIM--------MDLIHWGVKPEVAFSTMESVRHGRGISDENMAILKKNKNIPDW 1252

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
               +              Y F K+HA AY +++ + AW K +YP  +  A  ++  D  +
Sbjct: 1253 YIPSCLKI---------KYMFPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLFD 1303

Query: 801  KIKK---------------------------------FCQDARQFNIQIMPPSVNTPCV- 826
             +                                      +  +  I+I    ++     
Sbjct: 1304 LVAMSHGKNTVKAAMKEIQDKGNDASAKDKSLLTVLEIANECLERGIKIKMVDIDQSEAT 1363

Query: 827  DFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            DFK+   + I     A+ G+G   A+ I+ A A+K F S ED   R
Sbjct: 1364 DFKILDKHTILAPFNAVPGLGDNAAKQIVAARAEKKFLSKEDLAKR 1409



 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 38/90 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   + ++ +       Q AIAITD  ++ S  E      A G + + 
Sbjct: 335 VELHLHTNMSQLDATNAPSDFIKTAKKFGQKAIAITDHGDVQSFPEAYSTGKATGTKILY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 395 GVEANMIDDHALLVINPAPMTYEDREFVIF 424


>gi|116492651|ref|YP_804386.1| DNA polymerase III PolC [Pediococcus pentosaceus ATCC 25745]
 gi|122265885|sp|Q03FS8|DPO3_PEDPA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116102801|gb|ABJ67944.1| DNA polymerase III catalytic subunit, PolC type [Pediococcus
            pentosaceus ATCC 25745]
          Length = 1437

 Score =  201 bits (510), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 142/890 (15%), Positives = 278/890 (31%), Gaps = 163/890 (18%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            ++   Q N  MT             +L+  T  G + L +LVS   +     +  RI  S
Sbjct: 589  IEYHDQLNDHMTENEAYKHARPSHAILIAKTQAGLKNLFKLVSMSNVK-YYYRVPRIPRS 647

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD- 193
             L+++  EG+I+ +  SSG +  A        A ++   +        Y+ +     Y  
Sbjct: 648  ELEKL-REGIIVGSACSSGDVFTAMMQKGYADARRKAKFYD-------YLEVMPKPVYQP 699

Query: 194  -------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                             + +V+L    ++P+VAT +  +L+ +DY    +L+        
Sbjct: 700  LIEQELVSDNKKLEEIIANIVKLGEDLDIPVVATGDVHYLNPQDYIYRKILINSQGG--- 756

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
               +    +    +  R+    +  D               +      +        K+ 
Sbjct: 757  --ANPLNRSELPDVHFRTTD-EMLEDFSFLGPEVAHKIVVENSNKIADSVDDGISPVKDK 813

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                K    E R K ++        G        +  ++RLD EL  I    FS  +LI 
Sbjct: 814  LYTPKMPGAEDRIKQLSMDRAHALYG----EVLPEIVQERLDKELTSIIGNGFSVIYLIA 869

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               +  + K+   VG  RGS   S  A    IT+++PL                      
Sbjct: 870  QRLVHKSNKDGYLVG-SRGSVGSSFVATMSGITEVNPLPPHYRCPKCQYSFFYTKGEYGS 928

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                  + FE FL      +PD D++F  D +     Y+Q  +G
Sbjct: 929  GYDLPDKECPECGTWMIGDGQDIPFETFLGFKGDKVPDIDLNFSGDYQPIAHNYMQVLFG 988

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             + V +  T G++  K A   V                                 +   R
Sbjct: 989  KDNVFRAGTIGTVADKTAFGYV--------------------------KAYERDTNQHLR 1022

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG--DRPLSQLVPMYRDVRSDLPVTQ 557
             A         +  +++   G+ R    H AGI+I      +    P+      D     
Sbjct: 1023 GA--------EIERLAKGATGVKRTTGQHPAGILIVPDYMDVYDFSPIQYPA--DDQTAA 1072

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGT 617
            +     +   +   + L +  L     ++    Q    +D   IP DD     + +    
Sbjct: 1073 WETTHFDFHSIH-DNILKMDILGHDDPTMIRKLQDLSGIDPETIPTDDPGVMKIFSGPEV 1131

Query: 618  LGI--FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
            LG+   Q++S      +       +  ++       P     ++  +   +G +  +   
Sbjct: 1132 LGVDENQIQSKTGTLGIPEFGTRFVRGMLEET---HPTSYSELLQISGLSHGTDVWLGNA 1188

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
              +      T   +I     + +  +  G     +  +  ++ K          E +   
Sbjct: 1189 EELIKAGTVTLKEVIGCRDNIMMDLIHYGLDSQSSFQIMESVRKGK-----GIPEGYEDK 1243

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
                 +      +  ++      Y F ++HA+AY +++ + A+ K +YP+ + AA  T+ 
Sbjct: 1244 MRAANVPDWYIESCGKI-----KYMFPRAHASAYVLMALRIAYFKVYYPLVYYAAYFTVR 1298

Query: 796  MDNVEKIKK---------------------------------FCQDARQFNIQIMPPSVN 822
             D+ + +                                      +  +   +     + 
Sbjct: 1299 ADDFDIVSMARGKESLKNRMQEINDKGNDASTKEKNLLTVLELANEMLERGFEFKMIDIE 1358

Query: 823  TPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                + + +    +     A+ G+G   A+ I+ A ADKPF S ED   R
Sbjct: 1359 KSDAEEWLIEGKSLIAPFNALPGLGLNVAKQIVAARADKPFLSKEDLSKR 1408



 Score = 88.7 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++    +++++ + A    PA+A+TD   L +  E       +GI+ + 
Sbjct: 334 VELHLHTNMSTMDATNGISDLVGQAAKWGHPAVAVTDHAGLQAFPEAHAAGKKSGIKTLF 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N    P      ++ 
Sbjct: 394 GVEANLVDDGVPIGYNSEHCPLKGGKYVIF 423


>gi|167750041|ref|ZP_02422168.1| hypothetical protein EUBSIR_01009 [Eubacterium siraeum DSM 15702]
 gi|167657062|gb|EDS01192.1| hypothetical protein EUBSIR_01009 [Eubacterium siraeum DSM 15702]
          Length = 1605

 Score =  201 bits (510), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 161/899 (17%), Positives = 279/899 (31%), Gaps = 197/899 (21%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                 ++LV    G + L  L+S   L D   +  RI  S L +   EGLI+ +   +G 
Sbjct: 778  PTYHQIILVKNKVGLKNLYRLISASNL-DYFYKKPRIPKSLLSQY-REGLIIGSACEAGE 835

Query: 155  IDRAFF-FNSSQVAEKRLLTFKKLFGDRLYVNLQ---------RHR-----GYDRYRESQ 199
            + RA     S +  E+    +        Y+ +Q         R+         R     
Sbjct: 836  LFRAILEKESQEKIEEIASFYD-------YLEIQPIGNNMFLLRNGKVSSEEDLRDLNRA 888

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +VQL      P+VAT +  F   ED    +VL A        +    +        +   
Sbjct: 889  IVQLGDRLGKPVVATCDVHFKDPEDAVFREVLQAGQ----GYEDFANQPPLYFRTTDEML 944

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
                +    +A E  +    R + +++V  PI         D      + EL+       
Sbjct: 945  EEFAYLGEEKAKEVVITNTNRIADMIEVVRPIPTGTYTPHIDG----ADEELQQLCWDRA 1000

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                           +   +RL  EL+ I +  F+  ++I    + +++KN   VG  RG
Sbjct: 1001 HAWYGDDL------PETVEKRLKKELDSIIKHGFAVLYMIAQKLVAFSEKNGYLVG-SRG 1053

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   SV A    I++++PL                                         
Sbjct: 1054 SVGSSVVAIMAGISEVNPLPPHYRCPKCRHNEFILDGSYGSGFDLPPKKCPNCDIDMIRD 1113

Query: 400  -FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               + FE FL  D    PD D++F  + + +V RY +  +G + V +  T  ++Q K A 
Sbjct: 1114 GHDIPFETFLGFDGDKSPDIDLNFSGEVQGKVHRYTEELFGKDHVFKAGTISAVQEKTAE 1173

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
              V +                        +   I+                    ++   
Sbjct: 1174 GFVRK---------------WLEKKGMTANSAEISR-------------------LAAGC 1199

Query: 519  EGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDF 573
             G+ R  S H  G+V    D  +     +        SD+  T F+   +    ++K D 
Sbjct: 1200 TGVKRTTSQHPGGMVVVPSDYEVYDFTAVQHPADKTESDMITTHFDFHALHDT-ILKLDE 1258

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGT--------------LG 619
            LG    TL +       +    + ++ +P  D +   L T+                  G
Sbjct: 1259 LGHDVPTLYKH-----LEDMTGIKIADVPTSDPKVMELFTSTEPLGIKEEDLGVSSGTYG 1313

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            I +  +    Q L+  QP    D++ +  L                N +E I      I 
Sbjct: 1314 IPEFGTPFTLQMLKDAQPKKFSDLLQISGLSHG-------TDVWLGNAQELISDGICTIS 1366

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
             ++     +++Y         +  G     A  +   M    K    K     I  A + 
Sbjct: 1367 EVIGCRDDIMVYL--------MHQGLEPKLAFKI---MEITRKGNAKKLFNEDIYKAFEE 1415

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
                   +   + +     Y F K+HAAAY   + +  W K +YP EF +A +T   +N+
Sbjct: 1416 NNVPQWYIESCKKI----KYMFPKAHAAAYVTGAVKLCWFKVYYPSEFYSAVLTKHTENI 1471

Query: 800  EKIKKF--------------------------------CQDARQFNIQIMPPSVNTPCVD 827
            +                                       +     I  +P         
Sbjct: 1472 DVKTVLGGKESVRNKIQLIQSNPEATAKDKGMLDALLLIYEMMLRGITFLPVDYKKSRAT 1531

Query: 828  -FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
             + + D  +     A++G G   A  + E      F  LED  +      +N  VL  L
Sbjct: 1532 TYAIEDGNLRLPFLAVEGCGENAAIKLKEVIDKGDFICLEDIQA---QSGINSTVLSKL 1587



 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 5/83 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG----- 66
           V L +H++ S ++   + + ++ +  A    A+AITD  N  +  E              
Sbjct: 501 VELHMHTNMSDMDAVTAPSVLVKQAHAWGHKAVAITDHGNAQAYPEAMNTVEKINKDDPD 560

Query: 67  IQPIIGCQLDIDMQDNLKMTNQG 89
            + I G +       N  +    
Sbjct: 561 FKVIYGLEAYFVNDGNAVVDGCD 583


>gi|37784572|gb|AAP47637.1| DnaE precursor [Aphanizomenon ovalisporum]
          Length = 259

 Score =  201 bits (510), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 74/238 (31%), Positives = 116/238 (48%), Gaps = 13/238 (5%)

Query: 744 TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
               N        A   FNKSH+ AY  ++YQTA++K +YP+E++AA +T    + +K++
Sbjct: 21  EHHHNFAIKNGLIASNCFNKSHSTAYGYVTYQTAYLKANYPLEYMAALLTANSGDTDKVQ 80

Query: 804 KFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPF 862
           K+  +     I I PP +N   +DF     +I + L+A++ VG      I+ A      F
Sbjct: 81  KYINNCANMGITIDPPDINRSGLDFTPAGGKILFGLSAVRNVGQNAIACILSARNEGGDF 140

Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
            SL DFC  VD + +NRR +ESL+  GA D    +R QL+  L+ +  +AQ   K+R + 
Sbjct: 141 QSLADFCDGVDLRVVNRRTVESLIHCGAFDKIEANRKQLIHDLELVYDWAQSRAKDRASG 200

Query: 923 HENIFAHEKGT------------FSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
             N+F    G+            F      +     +   +   E+ +LGFY S HPL
Sbjct: 201 QGNLFDLLGGSSANTNHQIASSTFEAVPKAQPVPDFHPQEKLRMEKELLGFYVSDHPL 258


>gi|300361904|ref|ZP_07058081.1| DNA polymerase III PolC [Lactobacillus gasseri JV-V03]
 gi|300354523|gb|EFJ70394.1| DNA polymerase III PolC [Lactobacillus gasseri JV-V03]
          Length = 1432

 Score =  201 bits (510), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 147/898 (16%), Positives = 289/898 (32%), Gaps = 198/898 (22%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                + +L    EG + + +LVS         +  R   S L++   +GL+  +G   G 
Sbjct: 604  KPSHMSVLALNQEGLKNMYKLVSLASTK-YFYRIPRTPKSELRKYH-KGLLFGSGCWQGD 661

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ----------RHRGYDRYRESQVVQ-- 202
            +  +        A ++   +        Y+ +Q               D     +++Q  
Sbjct: 662  VFISMMQKGYDEAREKARFYD-------YLEVQPPASYQTLIDDDLIKDEAELHEIIQNI 714

Query: 203  --LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
              L      P+VAT +S ++   +     +L+A   S     K+ P +      +     
Sbjct: 715  YKLGKELNKPVVATGDSHYVEPHEAIYRKILLAAQKSNPNRNKNLPDLHFYSTQEMLDAF 774

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
              +  D+  A E  +E   + +  ++  API         +      + E+++       
Sbjct: 775  SFLGEDV--AKEIVIENTNKLADQIEEIAPIKSGLYPPHIE----NADQEMKDLTYNKAY 828

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                +         +    R++ ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 829  ELYGKPL------PKIVEDRIELELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 881

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 882  VGSSLVATMSGITEVNPLAPHYRCPKCKYSKFFENGEYGSGYDLPDKDCPKCGTPLVKDG 941

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + F  FL      +PD D++F  D +     Y++  +G +   +  T  ++  K A  
Sbjct: 942  QDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNYIRVMFGPDNSFRAGTIATVADKTAYG 1001

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V                            +   D++              L  ++    
Sbjct: 1002 YV----------------------------KHYEDENELHLRNAE------LDRLAAGAS 1027

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGIV+      +    P+             T F+   I    ++KFD L
Sbjct: 1028 GVKRTTGQHPAGIVVVPDNMDIYDFTPVQYPADDLSAAWLTTHFDFHSIHD-NILKFDIL 1086

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGI 620
            G    T+++     + Q    +D   IP DD     L ++                TLG+
Sbjct: 1087 GHDDPTMIR-----MLQDLSGIDPLTIPPDDPGVMSLFSSPEILGVTPEQIQSKTGTLGV 1141

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +R  LE  +P    +++ +  L                N +  I +    +  
Sbjct: 1142 PEFGTKFVRGMLEETKPTTFSELLQISGLSHG-------TDVWLGNAENLINNGTCKLKN 1194

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            ++     ++        +  +  G     A     ++        +  K    +    + 
Sbjct: 1195 VIGCRDNIM--------MDLIHWGVKPEVAFFTMESVRHGKGISDENMKILKKNDKIPDW 1246

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
               +              Y F K+HA AY +++ + AW K +YPV + A+  ++  D  +
Sbjct: 1247 YIPSCLKI---------KYMFPKAHATAYILMALRIAWFKVYYPVIYYASYFSVRADLFD 1297

Query: 801  KIKK---------------------------------FCQDARQFNIQIMPPSVNT-PCV 826
             +                                      +  +  I+I    VN    +
Sbjct: 1298 LVAMSHGKNTVKAAMKEIQDKGMDVSAKDKSLLTVLEIANECLERGIKIKMVDVNESEAM 1357

Query: 827  DFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            DFK+  D+ I     A+ G+G   A+ I+ A A++ F S ED  +R    K+++ ++E
Sbjct: 1358 DFKIIDDHTILAPFNAVPGLGDNAAKQIVAARAEQKFLSKEDLATR---GKVSQTIME 1412



 Score = 73.7 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   + ++ +       Q AIAITD  ++ +  E      +  ++ + 
Sbjct: 329 VELHLHTNMSQLDATSTASDYIKTAKKFGQKAIAITDHADVQAFPEAYHTGASEKMKILY 388

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N  +  +     ++ 
Sbjct: 389 GYEANMIDDHALLVLNPTEMDYRDHEYVIF 418


>gi|237739760|ref|ZP_04570241.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
 gi|229423368|gb|EEO38415.1| DNA polymerase III alpha subunit [Fusobacterium sp. 2_1_31]
          Length = 1449

 Score =  201 bits (510), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 155/902 (17%), Positives = 302/902 (33%), Gaps = 181/902 (20%)

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS-----GPIDR 157
            V T EG + + +LVS  ++   G +  RI  S L+E   EGLI+ +  S+     G +  
Sbjct: 616  VKTQEGLKNMYKLVSEGHIKYFGNKKARIPKSVLKE-NREGLIVGSSLSAHFMNSGELVE 674

Query: 158  AFFFNSSQVAEKRLLTF--KKLFGDRLYVNLQRHRGYD--------RYRESQVVQLAYTH 207
             +  +  +  E+    +   +L     Y  L    G                   L    
Sbjct: 675  LYLRHDLEKLEETAKFYDYIELLPKSTYNELIEKEGTGSLASYDEVEKMNKYFYDLGKRL 734

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
             + + A++N  +L E +     +L+  + +    ++ R          +       +   
Sbjct: 735  GILVTASSNVHYLDENEDIIRSILLYGSGTVYSPRQYRVNNGFYFRTTDEMLKEFSYLGE 794

Query: 268  PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
             EA E  +    + + +++     +P        D     E  +R               
Sbjct: 795  QEAKEVVITNTNKIADMVEEGIKPIPEGFYPPKMD---NAEEIVRTMTYEKAYRIYGDPL 851

Query: 328  IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTA 387
                        RL+ ELN I    FS  +L     ++ +  N   VG  RGS   S+ A
Sbjct: 852  ------PNIVSARLERELNAIINNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGSSLVA 904

Query: 388  YALTITDIDPLR-----------------------------------------FSLLFER 406
            + + IT+++ L                                          +S+ FE 
Sbjct: 905  FMMGITEVNALYPHYICDNPECKHSEFIEKEGVGIDLPDKICPNCGAPLRKDGYSIPFEV 964

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            F+      +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V +   
Sbjct: 965  FMGFKGDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAEAYVRK--- 1021

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
                                       +D+     R     + RL + ++K         
Sbjct: 1022 -------------------------YFEDNNLNAVRAEIIRLGRLCQGAKKTT------G 1050

Query: 527  THAAGIVIGDR--PLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             H  G+VI  +   + +  P+ R    +      T ++   +++  L+K D LG    T 
Sbjct: 1051 QHPGGMVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDE-QLVKLDILGHDDPTT 1109

Query: 582  LQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQLESSG 627
            ++     L Q    +++  IP  D +T  + ++                T GI +  +  
Sbjct: 1110 IK-----LLQEYTNMEIKDIPLADKDTLKIFSSTESLGVSPEEIGTEIGTYGIPEFGTGF 1164

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            +RQ L   +P    +++ +  L   G    +                        + T  
Sbjct: 1165 VRQMLIDTRPTTFAELVRISGLSH-GTNVWLNNAQEFVRN--------------GQATLS 1209

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
             II     +    +  G   S+A  +   + K   ++  +  E + +   +  +      
Sbjct: 1210 QIITVRDDIMNYLIDQGLDNSDAFKIMEFVRKGKPKKEPENWENYSNMMKEKNVPDWYIE 1269

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK------ 801
            +   +     +Y F K HA AY +++ + A+ K H P+ F AA ++ + D+ +       
Sbjct: 1270 SCRRI-----EYMFPKGHAVAYVMMAMRIAYFKVHKPLAFYAAFLSRKADDFDMEVMSKG 1324

Query: 802  -------------------------IKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRI 835
                                     I +   +     I+++P  +       FK+ D +I
Sbjct: 1325 VLAKQKLEELSKEPKLDPKKKNEQAICEIVVELEARGIELLPVDIYLSEGRKFKIEDGKI 1384

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
               L  I G+G     +I++   +  F S+ED   R    K+++ V + L   GA+    
Sbjct: 1385 RIPLIGISGLGGAVIENILKEREEAKFISVEDLKRRT---KMSQTVADKLKSIGAISSLS 1441

Query: 896  YS 897
             +
Sbjct: 1442 ET 1443



 Score = 81.0 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-----G 66
           V L  H+  S + G   + +++ +       AIAITD + + S     + A         
Sbjct: 331 VELHTHTKMSEMVGVTDVEDLIKRAKEYGHKAIAITDYSVVHSYPAAYKTAKKLSKDDDK 390

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           ++ I GC++ +   + L +TN           +V 
Sbjct: 391 MKVIFGCEMYMIDDEALMITNPKDKKIDEEEFVVF 425


>gi|268319259|ref|YP_003292915.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii FI9785]
 gi|262397634|emb|CAX66648.1| DNA polymerase III, alpha subunit [Lactobacillus johnsonii FI9785]
          Length = 1432

 Score =  200 bits (509), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 143/898 (15%), Positives = 288/898 (32%), Gaps = 198/898 (22%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                + +L    EG + + +LVS         +  R   S L++   +GL+  +G   G 
Sbjct: 604  KPSHMSVLALNQEGLKNMYKLVSLASTK-YFYRIPRTPKSELRKYH-KGLLFGSGCWQGD 661

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ----------RHRGYDRYRESQVVQ-- 202
            +  +        A ++   +        Y+ +Q               D     +++Q  
Sbjct: 662  VFISMMQKGYDEAREKARFYD-------YLEVQPPAAYQTLIEDDLIKDEDELHEIIQNI 714

Query: 203  --LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
              L      P+VAT+++ ++   +     +L+A         K+ P +      +     
Sbjct: 715  YKLGKELNKPVVATSDAHYVEPHEAIYRKILLAAQKGNPNRNKNLPDLHFYSTQEMLDAF 774

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
              +  D+  A E  ++   + +  ++  API         +      + E+++       
Sbjct: 775  SFLGEDV--AKEIVIDNTNKLADHIEEIAPIKSGLYPPHIE----NADQEMKDLTYNKAY 828

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                +         +    R++ ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 829  ELYGKPL------PKIVEDRIELELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 881

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 882  VGSSLVATMSGITEVNPLAPHYRCPNCKYSKFFENGEYGSGYDLPDKECPKCGTLLVKDG 941

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + F  FL      +PD D++F  D +     Y++  +G +   +  T  ++  K A  
Sbjct: 942  QDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNYIRVMFGPDNSFRAGTIATVADKTAYG 1001

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V                            +   D++              L  ++    
Sbjct: 1002 YV----------------------------KHYEDENELHLRNAE------LDRLAAGAS 1027

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGIV+      +    P+             T F+   I    ++KFD L
Sbjct: 1028 GVKRTTGQHPAGIVVVPDDMDIYDFTPVQYPADDLSAAWLTTHFDFHSIHD-NILKFDIL 1086

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGI 620
            G    T+++     + Q    VD   IP DD     L ++                TLG+
Sbjct: 1087 GHDDPTMIR-----MLQDLSGVDPLTIPPDDPGVMSLFSSPEILGVTPEQIQSKTGTLGV 1141

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +R  LE  +P    +++ +  L                N ++ I +    +  
Sbjct: 1142 PEFGTKFVRGMLEETKPTTFSELLQISGLSHG-------TDVWLGNAEDLINNGTCKLKN 1194

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            ++     ++        +  +        A     ++        +  +    +    + 
Sbjct: 1195 VIGCRDNIM--------MDLIHWDVKPEVAFFTMESVRHGRGISDENMEILKKNDKIPDW 1246

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
               +              Y F K+HA AY +++ + AW K +YPV + A+  ++  D  +
Sbjct: 1247 YIPSCLKI---------KYMFPKAHATAYILMALRIAWFKVYYPVIYYASYFSVRADLFD 1297

Query: 801  KIKK---------------------------------FCQDARQFNIQIMPPSVNTPCV- 826
             +                                      +  +  I+I    VN     
Sbjct: 1298 LVAMSHGKNTVKAAMKEIQDKGMDVSAKDKSLLTVLEIANECLERGIKIKMVDVNESEAT 1357

Query: 827  DFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            DFK+  D+ I     A+ G+G   A+ I+ A A++ F S ED  +R    K+++ ++E
Sbjct: 1358 DFKIIDDHTILAPFNAVPGLGDNAAKQIVAARAEQKFLSKEDLATR---GKVSQTIME 1412



 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   + ++ +       Q AIAITD  ++ S  E      +  ++ + 
Sbjct: 329 VELHLHTNMSQLDATSTASDFIKTAKKFGQKAIAITDHADVQSFPEAYHTGASEKMKILY 388

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N  +  +     ++ 
Sbjct: 389 GYEANMIDDHALLVLNPTEMDYRDREYVIF 418


>gi|282850817|ref|ZP_06260191.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            gasseri 224-1]
 gi|282557769|gb|EFB63357.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            gasseri 224-1]
          Length = 1389

 Score =  200 bits (509), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 146/898 (16%), Positives = 289/898 (32%), Gaps = 198/898 (22%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                + +L    EG + + +LVS         +  R   S L++   +GL+  +G   G 
Sbjct: 561  KPSHMSVLALNQEGLKNMYKLVSLASTK-YFYRIPRTPKSELRKYH-KGLLFGSGCWQGD 618

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ----------RHRGYDRYRESQVVQ-- 202
            +  +        A ++   +        Y+ +Q               D     +++Q  
Sbjct: 619  VFISMMQKGYDEAREKARFYD-------YLEVQPPAAYQTLIDDDLIKDEDELHEIIQNI 671

Query: 203  --LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
              L      P+VAT +S ++   +     +L+A   S     K  P +      +     
Sbjct: 672  YKLGKELNKPVVATGDSHYVEPHEAIYRKILLAAQKSNPNRNKKLPDLHFYSTQEMLDAF 731

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
              +  D+  A E  +E   + +  ++  API         +      + E+++       
Sbjct: 732  SFLGEDV--AKEIVIENTNKLADQIEEIAPIKSGLYPPHIE----NADQEMKDLTYNKAY 785

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                +         +    R++ ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 786  ELYGKPL------PKIVEDRIELELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 838

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 839  VGSSLVATMSGITEVNPLAPHYRCPKCKYSKFFENGEYGSGYDLPDKNCPKCGTPLVKDG 898

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + F  FL      +PD D++F  D +     Y++  +G +   +  T  ++  K A  
Sbjct: 899  QDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNYIRVMFGPDNSFRAGTIATVADKTAYG 958

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V                            +   D++              L  ++    
Sbjct: 959  YV----------------------------KHYEDENELHLRNAE------LDRLAAGAS 984

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGIV+      +    P+             T F+   I    ++KFD L
Sbjct: 985  GVKRTTGQHPAGIVVVPDDMDIYDFTPVQYPADDLSAAWLTTHFDFHSIHD-NILKFDIL 1043

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGI 620
            G    T+++     + Q    +D   IP DD     L ++                TLG+
Sbjct: 1044 GHDDPTMIR-----MLQDLSGIDPLTIPPDDPGVMSLFSSPKILGVTPEQIQSKTGTLGV 1098

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +R  LE  +P    +++ +  L                N ++ I +    +  
Sbjct: 1099 PEFGTKFVRGMLEETKPTTFSELLQISGLSHG-------TDVWLGNAEDLINNGTCKLKN 1151

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            ++     ++        +  +  G     A     ++        +  +    +    + 
Sbjct: 1152 VIGCRDNIM--------MDLIHWGVKPEVAFFTMESVRHGKGISDENMEILKKNDKIPDW 1203

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
               +              Y F K+HA AY +++ + AW K +YPV + A+  ++  D  +
Sbjct: 1204 YIPSCLKI---------KYMFPKAHATAYILMALRIAWFKVYYPVIYYASYFSVRADLFD 1254

Query: 801  KIKK---------------------------------FCQDARQFNIQIMPPSVNT-PCV 826
             +                                      +  +  I+I    VN    +
Sbjct: 1255 LVAMSHGKNTVKAAMKEIQDKGMDVSAKDKSLLTVLEIANECLERGIKIKMVDVNESEAM 1314

Query: 827  DFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            DFK+  D+ I     A+ G+G   A+ I+ A A++ F S ED  +R    K+++ ++E
Sbjct: 1315 DFKIIDDHTILAPFNAVPGLGDNAAKQIVAARAEQKFLSKEDLATR---GKVSQTIME 1369



 Score = 71.4 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   + ++ +       Q AIAITD  ++ +  E      +  ++ + 
Sbjct: 286 VELHLHTNMSQLDATSTASDFIKTAKKFGQKAIAITDHADVQAFPEAYHTGASEKMKILY 345

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N  +  +     ++ 
Sbjct: 346 GYEANMIDDHALLVLNPTEMDYRDREYVIF 375


>gi|191638563|ref|YP_001987729.1| DNA polymerase III PolC [Lactobacillus casei BL23]
 gi|190712865|emb|CAQ66871.1| DNA polymerase III polC-type (PolIII) [Lactobacillus casei BL23]
 gi|327382601|gb|AEA54077.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            casei LC2W]
 gi|327385799|gb|AEA57273.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            casei BD-II]
          Length = 1444

 Score =  200 bits (509), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 152/903 (16%), Positives = 293/903 (32%), Gaps = 176/903 (19%)

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
             Q N ++              ++   T  G + L +LVS   +     +  R+  S LQ+
Sbjct: 594  NQLNDRVGAGDAYKAARPSHAIVFAKTQAGLKNLFKLVSLSNVK-YFYRVPRVPRSQLQK 652

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRES 198
            +  EGL++ +  S+G +  A        A  +   +        Y+ +Q    Y    E+
Sbjct: 653  L-REGLLVGSACSNGEVFTAMMQKGEAEARAKASFYD-------YLEVQPLPVYQPLIEA 704

Query: 199  QVVQ--------------LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             +++              +    E P+VAT ++ +L + D     +L+        +  +
Sbjct: 705  GLIKGEAHLKDIIQKIINIGSELEKPVVATGDAHYLDQHDAIYRQILIHSQGG--ANPLN 762

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTV--EIARRCSFILQVHAPILPRFIEKECDD 302
            R  +   H+      +        E     V        +++     P+  +    E   
Sbjct: 763  RHSLPDVHFRSTSEMLTDFSWLGEEKAHELVVDNSNLIANWVDDDITPVKDKLYTPEVPG 822

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +    E  L++  +                      QRLD EL  I    FS  + I   
Sbjct: 823  V----EENLKHDVMTTAHELYGDPL------PDIVAQRLDKELKSIIGNGFSVIYNIAQR 872

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------- 399
             +  + K+   VG  RGS   S+ A    IT+++PL                        
Sbjct: 873  LVLKSNKDGYLVG-SRGSVGSSLAATMAGITEVNPLPPHYRCPNCQYSEFFTHGEIGSGF 931

Query: 400  ------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
                                + FE FL      +PD D++F  D +     Y++  +G +
Sbjct: 932  DLPDKQCPKCGADLHKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQPIAHNYIKVMFGED 991

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
               +  T G++  K A   V +A +    Q  R  +                        
Sbjct: 992  HSFRAGTIGTVADKTAYGYV-KAYERDTGQQLRGAE------------------------ 1026

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRSD---LPVT 556
                     +  ++Q   G+ R    H AGI+I   D  +    P+             T
Sbjct: 1027 ---------IDRLAQGDTGVKRTTGQHPAGILIVPADMDIYDFTPIQYPADDQNAAWMTT 1077

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             F+   I    ++K D LG    T+++     + Q    V+   IP DD     L +   
Sbjct: 1078 HFDFHSIHD-NILKMDVLGHDDPTMIR-----MLQDLSGVEPKSIPTDDPGVMALFSGTK 1131

Query: 617  TLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
            +LG+   Q+ S      +       +  ++      +P     ++  +   +G +  +  
Sbjct: 1132 SLGVTPEQINSKMGTLGIPEFGTRFVRGMLEET---KPTTFSELLQISGLSHGTDVWLGN 1188

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
               +      T   +I     + +  +  G   S A  +   + K      D     +  
Sbjct: 1189 AEELIKQGIVTLKEVIGCRDNIMMDLIHWGMEDSMAFNIMEHVRKGRGIPDD-----WQK 1243

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               +N       +     +     Y F K+HA AY +++ + AW K HYP+ +  A  ++
Sbjct: 1244 AMRENENVPDWYIESCLKI----KYMFPKAHATAYILMALRIAWFKVHYPLIYYTAYFSV 1299

Query: 795  EMDNVE---------------------------------KIKKFCQDARQFNIQIMPPSV 821
              ++ +                                  + +   +  +   +I    V
Sbjct: 1300 RAEDFDLAAMSHGKEAVKAAMKEITDKGMDASTKEKQLLTVLEIANECLERGFKIKMIDV 1359

Query: 822  NTP-CVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
                  +F +  D+ I     A+ G+G   A+ I+ A  +KPF S ED  +R    K+++
Sbjct: 1360 TKSDSHNFLIQDDHTILAPFRAVPGLGDNVAKQIVAAREEKPFLSKEDLANR---GKVSK 1416

Query: 880  RVL 882
             ++
Sbjct: 1417 TLI 1419



 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 37/91 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++    +++ + +       AIA+TD   L +  E    A  AG++ + 
Sbjct: 334 VELHLHTNMSQMDAMNPISDYVKRAKEWGHKAIAVTDHAGLQAYPEAHSAAVKAGLKMLY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           G ++++            +         V+ 
Sbjct: 394 GVEINLVDDGTPVAYRADEPRDLASAEYVVF 424


>gi|260101367|ref|ZP_05751604.1| DNA polymerase subunit III [Lactobacillus helveticus DSM 20075]
 gi|260084819|gb|EEW68939.1| DNA polymerase subunit III [Lactobacillus helveticus DSM 20075]
          Length = 1436

 Score =  200 bits (509), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 138/886 (15%), Positives = 273/886 (30%), Gaps = 195/886 (22%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                + +L    +G + L +LVS     +   +  R   S L  +  EGL   +G   G 
Sbjct: 608  RPSHMTVLAKDQKGLKNLYKLVSIASTKN-FYRIPRTPKSDLARLH-EGLFYGSGCWQGD 665

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQ------------ 202
            +  A        A ++   +        ++ +Q    Y +  E  +++            
Sbjct: 666  VFIAMIQKGYDEAREKAKFYD-------FLEVQPPANYSQLIEDGLIKDEAQLEDIIRNI 718

Query: 203  --LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
              L      P+VAT ++ ++   D     +L++   S     K +P +      +     
Sbjct: 719  YKLGKELNKPVVATGDAHYVEPHDAIYRTILISAQRSNPNRNKPQPDLHFYSTQEMLDAF 778

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
              +  D+  A E  ++   + +  +    PI                + E++        
Sbjct: 779  SFLGEDI--AKEIVIDNTNKIADEISEIQPIKDGLYPPHIAH----ADEEMKKLTYDKAY 832

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                +         +  + R+D ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 833  ELYGKPL------PKIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 885

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 886  VGSSLVATMSGITEVNPLAPHYRCPKCKYSQFFENGEYGSGFDLPDKACPKCGTQLVKDG 945

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + F  FL      +PD D++F  D +     +++  +G +   +  T  ++  K A  
Sbjct: 946  QDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPDNSYRAGTIATVADKTAYG 1005

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                                                  F E R        L  ++  + 
Sbjct: 1006 YA----------------------------------KHFDEERDLKARNAELDRLASGIR 1031

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGIV+      +    P+            +T ++   I    ++KFD L
Sbjct: 1032 GVKRTTGQHPAGIVVVPDDMDIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDIL 1090

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGI 620
            G    T+++       Q    +D   IP DD     L ++                TLG+
Sbjct: 1091 GHDDPTMIRH-----LQDLSGIDPLTIPPDDPGVMSLFSSPKILGVTPEQIQSETGTLGV 1145

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +R  LE  +P    +++ +  L                N ++ + +    +  
Sbjct: 1146 PEFGTRFVRGMLEETKPTTFAELLQISGLSHG-------TDVWLGNAEDLVNNGTCKLKD 1198

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            ++     ++        +  +  G     A     ++        +       +    + 
Sbjct: 1199 VIGCRDNIM--------MDLIHWGVKPEVAFSTMESVRHGRGISDENMAILKKNKNIPDW 1250

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
               +              Y F K+HA AY +++ + AW K +YP  +  A  ++  D  +
Sbjct: 1251 YIPSCLKI---------KYMFPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLFD 1301

Query: 801  KIKK---------------------------------FCQDARQFNIQIMPPSVNTPCV- 826
             +                                      +  +  I+I    ++     
Sbjct: 1302 LVAMSHGKNTVKAAMKEIQDKGNDASAKDKSLLTVLEIANECLERGIKIKMVDIDQSEAT 1361

Query: 827  DFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            DFK+   + I     A+ G+G   A+ I+ A A+K F S ED   R
Sbjct: 1362 DFKILDKHTILAPFNAVPGLGDNAAKQIVAARAEKKFLSKEDLAKR 1407



 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 38/90 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   + ++ +       Q AIAITD  ++ S  E      A G + + 
Sbjct: 333 VELHLHTNMSQLDATNAPSDFIKTAKKFGQKAIAITDHGDVQSFPEAYSTGKATGTKILY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 393 GVEANMIDDHALLVINPAPMTYEDREFVIF 422


>gi|238852616|ref|ZP_04643026.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            gasseri 202-4]
 gi|238834762|gb|EEQ26989.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            gasseri 202-4]
          Length = 1432

 Score =  200 bits (509), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 146/898 (16%), Positives = 289/898 (32%), Gaps = 198/898 (22%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                + +L    EG + + +LVS         +  R   S L++   +GL+  +G   G 
Sbjct: 604  KPSHVSVLALNQEGLKNMYKLVSLASTK-YFYRIPRTPKSELRKYH-KGLLFGSGCWQGD 661

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ----------RHRGYDRYRESQVVQ-- 202
            +  +        A ++   +        Y+ +Q               D     +++Q  
Sbjct: 662  VFISMMQKGYDEAREKARFYD-------YLEVQPPAAYQTLIDDDLIKDEDELHEIIQNI 714

Query: 203  --LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
              L      P+VAT +S ++   +     +L+A   S     K  P +      +     
Sbjct: 715  YKLGKELNKPVVATGDSHYVEPHEAIYRKILLAAQKSNPNRNKKLPDLHFYSTQEMLDAF 774

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
              +  D+  A E  +E   + +  ++  API         +      + E+++       
Sbjct: 775  SFLGEDV--AKEIVIENTNKLADQIEEIAPIKSGLYPPHIE----NADQEMKDLTYNKAY 828

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                +         +    R++ ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 829  ELYGKPL------PKIVEDRIELELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 881

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 882  VGSSLVATMSGITEVNPLAPHYRCPKCKYSKFFENGEYGSGYDLPDKNCPKCGTSLVKDG 941

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + F  FL      +PD D++F  D +     Y++  +G +   +  T  ++  K A  
Sbjct: 942  QDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNYIRVMFGPDNSFRAGTIATVADKTAYG 1001

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V                            +   D++              L  ++    
Sbjct: 1002 YV----------------------------KHYEDENELHLRNAE------LDRLAAGAS 1027

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGIV+      +    P+             T F+   I    ++KFD L
Sbjct: 1028 GVKRTTGQHPAGIVVVPDDMDIYDFTPVQYPADDLSAAWLTTHFDFHSIHD-NILKFDIL 1086

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGI 620
            G    T+++     + Q    +D   IP DD     L ++                TLG+
Sbjct: 1087 GHDDPTMIR-----MLQDLSGIDPLTIPPDDPGVMSLFSSPKILGVTPEQIQSKTGTLGV 1141

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +R  LE  +P    +++ +  L                N ++ I +    +  
Sbjct: 1142 PEFGTKFVRGMLEETKPTTFSELLQISGLSHG-------TDVWLGNAEDLINNGTCKLKN 1194

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            ++     ++        +  +  G     A     ++        +  +    +    + 
Sbjct: 1195 VIGCRDNIM--------MDLIHWGVKPEVAFFTMESVRHGKGISDENMEILKKNDKIPDW 1246

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
               +              Y F K+HA AY +++ + AW K +YPV + A+  ++  D  +
Sbjct: 1247 YIPSCLKI---------KYMFPKAHATAYILMALRIAWFKVYYPVIYYASYFSVRADLFD 1297

Query: 801  KIKK---------------------------------FCQDARQFNIQIMPPSVNT-PCV 826
             +                                      +  +  I+I    VN    +
Sbjct: 1298 LVAMSHGKNTVKAAMKEIQDKGMDVSAKDKSLLTVLEIANECLERGIKIKMVDVNESEAM 1357

Query: 827  DFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            DFK+  D+ I     A+ G+G   A+ I+ A A++ F S ED  +R    K+++ ++E
Sbjct: 1358 DFKIIDDHTILAPFNAVPGLGDNAAKQIVAARAEQKFLSKEDLATR---GKVSQTIME 1412



 Score = 71.4 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   + ++ +       Q AIAITD  ++ +  E      +  ++ + 
Sbjct: 329 VELHLHTNMSQLDATSTASDFIKTAKKFGQKAIAITDHADVQAFPEAYHTGASEKMKILY 388

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N  +  +     ++ 
Sbjct: 389 GYEANMIDDHALLVLNPTEMDYRDREYVIF 418


>gi|291557938|emb|CBL35055.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium siraeum
            V10Sc8a]
          Length = 1605

 Score =  200 bits (509), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 155/885 (17%), Positives = 279/885 (31%), Gaps = 169/885 (19%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                 ++LV    G + L  L+S   L D   +  RI  S L +   EGLI+ +   +G 
Sbjct: 778  PTYHQIILVKNKVGLKNLYRLISASNL-DYFYKKPRIPKSLLSQY-REGLIIGSACEAGE 835

Query: 155  IDRAFF-FNSSQVAEKRLLTFKKLFGDRLYVNLQ---------RHR-----GYDRYRESQ 199
            + RA     S +  E+    +        Y+ +Q         R+         R     
Sbjct: 836  LFRAILEKESQEKIEEIASFYD-------YLEIQPIGNNMFLLRNGKVSSEEDLRDLNRA 888

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +VQL      P+VAT +  F   ED    +VL A        +    +        +   
Sbjct: 889  IVQLGDRLGKPVVATCDVHFKDPEDAVFREVLQAGQ----GYEDFANQPPLYFRTTDEML 944

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
                +    +A E  +    R + +++V  PI         D      + EL+       
Sbjct: 945  EEFAYLGEEKAKEVVITNTNRIADMIEVVRPIPTGTYTPHIDG----ADEELQQLCWDRA 1000

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                           +   +RL  EL+ I +  F+  ++I    + +++KN   VG  RG
Sbjct: 1001 HAWYGDDL------PETVEKRLKKELDSIIKHGFAVLYMIAQKLVAFSEKNGYLVG-SRG 1053

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   SV A    I++++PL                                         
Sbjct: 1054 SVGSSVVAIMAGISEVNPLPPHYRCPKCRHNEFILDGSYGSGFDLPPKKCPNCDIDMIRD 1113

Query: 400  -FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               + FE FL  D    PD D++F  + + +V RY +  +G + V +  T  ++Q K A 
Sbjct: 1114 GHDIPFETFLGFDGDKSPDIDLNFSGEVQGKVHRYTEELFGKDHVFKAGTISAVQEKTAE 1173

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
              V +                        +   I+                    ++   
Sbjct: 1174 GFVRK---------------WLEKKGMTANSAEISR-------------------LAAGC 1199

Query: 519  EGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDF 573
             G+ R  S H  G+V    D  +     +        SD+  T F+   +    ++K D 
Sbjct: 1200 TGVKRTTSQHPGGMVVVPSDYEVYDFTAVQHPADKTESDMITTHFDFHALHDT-ILKLDE 1258

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            LG    TL +       +    + ++ +P  D +   L T+   LGI + +         
Sbjct: 1259 LGHDVPTLYKH-----LEDMTGIKIADVPTSDPKVMELFTSTEPLGIKEEDLGVSSGTYG 1313

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +      +  ++   +P    +++  +   +G +  +     +      T   +I   
Sbjct: 1314 IPEFGTPFTL-QMLKDAQPKKFSDLLQISGLSHGTDVWLGNAQDLISDGTCTISEVIGCR 1372

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
              + +  +  G     A  +   M    K    K     I  A +        +   + +
Sbjct: 1373 DDIMVYLMHQGLEPKLAFKI---MEITRKGNAKKLFNEDIYKAFEENNVPQWYIESCKKI 1429

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF-------- 805
                 Y F K+HAAAY   + +  W K +YP EF +A +T   +N++             
Sbjct: 1430 ----KYMFPKAHAAAYVTGAVKLCWFKVYYPSEFYSAVLTKHTENIDVKTVLGGKESVRN 1485

Query: 806  ------------------------CQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLA 840
                                      +     I  +P          + + D  +     
Sbjct: 1486 KIQLIQSNPEATAKDKGMLDALLLIYEMMLRGITFLPVDYKKSRATTYAIEDGNLRLPFL 1545

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            A++G G   A  + E      F  LED  +      +N  VL  L
Sbjct: 1546 AVEGCGENAAIKLKEVIDKGDFICLEDIQA---QSGINSTVLSKL 1587



 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 5/83 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG----- 66
           V L +H++ S ++   + + ++ +  A    A+AITD  N  +  E              
Sbjct: 501 VELHMHTNMSDMDAVTAPSVLVKQAHAWGHKAVAITDHGNAQAYPEAMNTVEKINKDDPD 560

Query: 67  IQPIIGCQLDIDMQDNLKMTNQG 89
            + I G +       N  +    
Sbjct: 561 FKVIYGLEAYFVNDGNAVVDGCD 583


>gi|116629466|ref|YP_814638.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus gasseri ATCC
            33323]
 gi|116095048|gb|ABJ60200.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
            gasseri ATCC 33323]
          Length = 1432

 Score =  200 bits (509), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 146/898 (16%), Positives = 289/898 (32%), Gaps = 198/898 (22%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                + +L    EG + + +LVS         +  R   S L++   +GL+  +G   G 
Sbjct: 604  KPSHMSVLALNQEGLKNMYKLVSLASTK-YFYRIPRTPKSELRKYH-KGLLFGSGCWQGD 661

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ----------RHRGYDRYRESQVVQ-- 202
            +  +        A ++   +        Y+ +Q               D     +++Q  
Sbjct: 662  VFISMMQKGYDEAREKARFYD-------YLEVQPPAAYQTLIDDDLIKDEDELHEIIQNI 714

Query: 203  --LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
              L      P+VAT +S ++   +     +L+A   S     K  P +      +     
Sbjct: 715  YKLGKELNKPVVATGDSHYVEPHEAIYRKILLAAQKSNPNRNKKLPDLHFYSTQEMLDAF 774

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
              +  D+  A E  +E   + +  ++  API         +      + E+++       
Sbjct: 775  SFLGEDV--AKEIVIENTNKLADQIEEIAPIKSGLYPPHIE----NADQEMKDLTYNKAY 828

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                +         +    R++ ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 829  ELYGKPL------PKIVEDRIELELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 881

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 882  VGSSLVATMSGITEVNPLAPHYRCPKCKYSKFFENGEYGSGYDLPDKNCPKCGTPLVKDG 941

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + F  FL      +PD D++F  D +     Y++  +G +   +  T  ++  K A  
Sbjct: 942  QDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNYIRVMFGPDNSFRAGTIATVADKTAYG 1001

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V                            +   D++              L  ++    
Sbjct: 1002 YV----------------------------KHYEDENELHLRNAE------LDRLAAGAS 1027

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGIV+      +    P+             T F+   I    ++KFD L
Sbjct: 1028 GVKRTTGQHPAGIVVVPDDMDIYDFTPVQYPADDLSAAWLTTHFDFHSIHD-NILKFDIL 1086

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGI 620
            G    T+++     + Q    +D   IP DD     L ++                TLG+
Sbjct: 1087 GHDDPTMIR-----MLQDLSGIDPLTIPPDDPGVMSLFSSPKILGVTPEQIQSKTGTLGV 1141

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +R  LE  +P    +++ +  L                N ++ I +    +  
Sbjct: 1142 PEFGTKFVRGMLEETKPTTFSELLQISGLSHG-------TDVWLGNAEDLINNGTCKLKN 1194

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            ++     ++        +  +  G     A     ++        +  +    +    + 
Sbjct: 1195 VIGCRDNIM--------MDLIHWGVKPEVAFFTMESVRHGKGISDENMEILKKNDKIPDW 1246

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
               +              Y F K+HA AY +++ + AW K +YPV + A+  ++  D  +
Sbjct: 1247 YIPSCLKI---------KYMFPKAHATAYILMALRIAWFKVYYPVIYYASYFSVRADLFD 1297

Query: 801  KIKK---------------------------------FCQDARQFNIQIMPPSVNT-PCV 826
             +                                      +  +  I+I    VN    +
Sbjct: 1298 LVAMSHGKNTVKAAMKEIQDKGMDVSAKDKSLLTVLEIANECLERGIKIKMVDVNESEAM 1357

Query: 827  DFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            DFK+  D+ I     A+ G+G   A+ I+ A A++ F S ED  +R    K+++ ++E
Sbjct: 1358 DFKIIDDHTILAPFNAVPGLGDNAAKQIVAARAEQKFLSKEDLATR---GKVSQTIME 1412



 Score = 71.4 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   + ++ +       Q AIAITD  ++ +  E      +  ++ + 
Sbjct: 329 VELHLHTNMSQLDATSTASDFIKTAKKFGQKAIAITDHADVQAFPEAYHTGASEKMKILY 388

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N  +  +     ++ 
Sbjct: 389 GYEANMIDDHALLVLNPTEMDYRDREYVIF 418


>gi|239631345|ref|ZP_04674376.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301066623|ref|YP_003788646.1| DNA polymerase III subunit alpha [Lactobacillus casei str. Zhang]
 gi|239525810|gb|EEQ64811.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300439030|gb|ADK18796.1| DNA polymerase III, alpha subunit (gram-positive type) [Lactobacillus
            casei str. Zhang]
          Length = 1444

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 153/903 (16%), Positives = 293/903 (32%), Gaps = 176/903 (19%)

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
             Q N ++              ++   T  G + L +LVS   +     +  R+  S LQ+
Sbjct: 594  NQLNDRVGAGDAYKAARPSHAIVFAKTQAGLKNLFKLVSLSNVK-YFYRVPRVPRSQLQK 652

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRES 198
            +  EGL++ +  SSG +  A        A  +   +        Y+ +Q    Y    E+
Sbjct: 653  L-REGLLVGSACSSGEVFTAMMQKGEAEARAKASFYD-------YLEVQPLPVYQPLIEA 704

Query: 199  QVVQ--------------LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             +++              +    E P+VAT ++ +L + D     +L+        +  +
Sbjct: 705  GLIKGEAHLKDIIQKVIKIGSELEKPVVATGDAHYLDQHDAIYRQILIHSQGG--ANPLN 762

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTV--EIARRCSFILQVHAPILPRFIEKECDD 302
            R  +   H+      +        E     V        +++     P+  +    E   
Sbjct: 763  RHSLPDVHFRSTSEMLTDFSWLGEEKAHELVVDNSNLIANWVDDDITPVKDKLYTPEVPG 822

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +    E  L++  +                      QRLD EL  I    FS  + I   
Sbjct: 823  V----EENLKHDVMTTAHELYGDPL------PDIVAQRLDKELKSIIGNGFSVIYNIAQR 872

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------- 399
             +  + K+   VG  RGS   S+ A    IT+++PL                        
Sbjct: 873  LVLKSNKDGYLVG-SRGSVGSSLAATMAGITEVNPLPPHYRCPNCQYSEFFTHGEIGSGF 931

Query: 400  ------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
                                + FE FL      +PD D++F  D +     Y++  +G +
Sbjct: 932  DLPDKQCPKCGADLHKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQPIAHNYIKVMFGED 991

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
               +  T G++  K A   V +A +    Q  R  +                        
Sbjct: 992  HSFRAGTIGTVADKTAYGYV-KAYERDTGQQLRGAE------------------------ 1026

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRSD---LPVT 556
                     +  ++Q   G+ R    H AGI+I   D  +    P+             T
Sbjct: 1027 ---------IDRLAQGDTGVKRTTGQHPAGILIVPADMDIYDFTPIQYPADDQNAAWMTT 1077

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             F+   I    ++K D LG    T+++     + Q    V+   IP DD     L +   
Sbjct: 1078 HFDFHSIHD-NILKMDVLGHDDPTMIR-----MLQDLSGVEPKSIPTDDPGVMALFSGTK 1131

Query: 617  TLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
            +LG+   Q+ S      +       +  ++      +P     ++  +   +G +  +  
Sbjct: 1132 SLGVTPEQINSKMGTLGIPEFGTRFVRGMLEET---KPTTFSELLQISGLSHGTDVWLGN 1188

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
               +      T   +I     + +  +  G   S A  +   + K      D     +  
Sbjct: 1189 AEELIKQGIVTLKEVIGCRDNIMMDLIHWGMEDSMAFNIMEHVRKGRGIPDD-----WQK 1243

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               +N       +     +     Y F K+HA AY +++ + AW K HYP+ +  A  ++
Sbjct: 1244 AMRENENVPDWYIESCLKI----KYMFPKAHATAYILMALRIAWFKVHYPLIYYTAYFSV 1299

Query: 795  EMDNVE---------------------------------KIKKFCQDARQFNIQIMPPSV 821
              ++ +                                  + +   +  +   +I    V
Sbjct: 1300 RAEDFDLAAMSHGKEAVKAAMKEITDKGMDASTKEKQLLTVLEIANECLERGFKIKMIDV 1359

Query: 822  NTP-CVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
                  +F +  D+ I     A+ G+G   A+ I+ A  +KPF S ED  +R    K+++
Sbjct: 1360 TKSDSHNFLIQDDHTILAPFRAVPGLGDNVAKQIVAAREEKPFLSKEDLANR---GKVSK 1416

Query: 880  RVL 882
             ++
Sbjct: 1417 TLI 1419



 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 37/91 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++    +++ + +       AIA+TD   L +  E    A  AG++ + 
Sbjct: 334 VELHLHTNMSQMDAMNPISDYVKRAKEWGHKAIAVTDHAGLQAYPEAHSAAVKAGLKMLY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           G ++++            +         V+ 
Sbjct: 394 GVEINLVDDGTPVAYRADEPRDLASAEYVVF 424


>gi|149688726|gb|ABR27774.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
          Length = 316

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 95/331 (28%), Positives = 157/331 (47%), Gaps = 25/331 (7%)

Query: 36  IAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
               + P + I+DT+NL  +LEF++     G QPIIG Q+    +D   +          
Sbjct: 2   CKEKKIPCLGISDTSNLCGSLEFAENISKVGTQPIIGTQIYFRFEDTTGL---------- 51

Query: 96  VPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPI 155
              + L+     GY+R+IEL SR YL +       + +  L  I TEG+ +L+G   G  
Sbjct: 52  ---LPLIALNENGYKRIIELSSRSYLENDALSDPHLDVKDLL-IDTEGVSLLSGTIQGLF 107

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVAT 214
            + F         K   +    F D  Y+ +QRH   +     +  ++ +   ++P++AT
Sbjct: 108 GKLFEKGRLDEISKLYRSLSSKFNDNFYLEIQRHGDQNEIAFEKFNLEQSLKIQIPIIAT 167

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENT 274
           N   +L+ + +EAHD L  +   T V++K+R + +  HY K+  EM  +FSDLPEALEN 
Sbjct: 168 NEVYYLTPDMHEAHDALTCIGSKTYVNEKNRIKYSNQHYFKSNEEMSKLFSDLPEALENN 227

Query: 275 VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL------AQGAI 328
             +  +C+F  Q   P+LP    ++        +  L+  ++ GL+ +        +  +
Sbjct: 228 FNLPFKCNFRPQFSKPVLPNISSEKG----GSADEILKKDSLDGLKEKFLKVFKIEENNL 283

Query: 329 AKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                   Y+ RLD EL +I  MK+  YFLI
Sbjct: 284 KTNDKFLKYKDRLDHELKIIIEMKYPSYFLI 314


>gi|227432323|ref|ZP_03914316.1| DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp.
            cremoris ATCC 19254]
 gi|227351929|gb|EEJ42162.1| DNA-directed DNA polymerase [Leuconostoc mesenteroides subsp.
            cremoris ATCC 19254]
          Length = 1437

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 143/914 (15%), Positives = 302/914 (33%), Gaps = 169/914 (18%)

Query: 75   LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            L+   + N +MT              LLV  A G + L +LVSR  + +   +  RI  S
Sbjct: 588  LNRHNELNDRMTEGDAWKHGRPVHATLLVQNATGLKNLYKLVSRSNI-EFFARVPRIPRS 646

Query: 135  WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD- 193
             L++   EGL++ TG +SG +  +      Q AEK+   +        ++ +Q    Y  
Sbjct: 647  ILEQY-REGLLVGTGDTSGDVIISLIEKGIQEAEKKAAYYD-------FIEIQPTANYQP 698

Query: 194  -------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                         +     +V +    + P+V T +  + + ED    ++L+A       
Sbjct: 699  MIESGLIATEEKLQSILKDIVAIGDKLKKPVVVTEDVKYTNPEDKIYRNILIATQPGNPQ 758

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
            ++   P +      +   +   + +DL  A +  ++     + +L+   P+         
Sbjct: 759  NRTALPDLNFKTTQELLDDYAFMGADL--AKKLVIDNTHLVANMLEDIDPLKSGSYPPNI 816

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
                    +EL  +     +    +         ++ + R+D EL  I    F+ +++I 
Sbjct: 817  PGAG----DELTERTYRTAKQWYGEP------IPKEIQARIDQELKAIIGNGFAPHYIIA 866

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               +  + K+   VG  RGS   S  A    IT+++PL                      
Sbjct: 867  QRLVAKSVKDGYLVG-SRGSVGSSFVATMSGITEVNPLPPHYRSAHGDYFELVDPKEYES 925

Query: 400  ---------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
                                  ++ FE F+      +PD D++F  D +     Y++  +
Sbjct: 926  GYDLPEKEDPNHPGEFLIGDGQNIPFETFMGFTGNKVPDIDLNFSGDYQPIAHNYMKVLF 985

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G   V +  T  ++  K A   V                                    +
Sbjct: 986  GEHNVYRAGTIATVAEKTAFGYV----------------------------------KAY 1011

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRSDLPVT 556
                        +  ++Q + G+ R    H  GI+I      +    P+         + 
Sbjct: 1012 EREHDQHYRGAEIERLAQGMTGVKRTTGQHPGGILIVPREYEVYDFTPIQYPADDQKSL- 1070

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             +    ++   +   + L +  L     ++    +    +D   IP +D     L T+  
Sbjct: 1071 -WQTTHMDYHSIH-DNLLKMDILGHDDPTMVRTLKDMSGIDPQSIPANDPGVLSLFTSTE 1128

Query: 617  TLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
             LG+   Q+ S+     L     + +  +   ++  +P     ++  +   +G +  +  
Sbjct: 1129 ALGVTPEQIFSNTGTLGLPEFGTNFVRGM---LAETQPHTYSELLQISGLSHGTDVWLGN 1185

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
               +      T G +I     +    +  G   ++A  +   + K      + QK+    
Sbjct: 1186 ANELIKNGTATIGTVIGTRDKIMTDLINWGVPAADAFNIMEKVRKGKGITEEYQKQLR-- 1243

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
                    +      +        Y F ++HAAAY +++ + A+ K ++P  + A   ++
Sbjct: 1244 --------EEKIPEWYIQSMLKIKYMFPRAHAAAYVLMALRIAYFKVYFPTIYYATYFSV 1295

Query: 795  EMDNVEKIKK---------------------------------FCQDARQFNIQIMPPSV 821
              D  + +                                      +A + NI      +
Sbjct: 1296 RADAFDIVAMSRGKDATKAAIQKLKSLGNDATVGDKNLLTVLEMANEALERNISFAMVDL 1355

Query: 822  NTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
            N     ++ +  + +     ++ G+G   A+ I+    +KPF S ED   R    K+++ 
Sbjct: 1356 NKSEALEWVIDGDTLIPPFVSLPGLGDNVAKQIVAERTEKPFISKEDLKKR---GKVSQT 1412

Query: 881  VLESLVFAGALDCF 894
            ++E +     LD  
Sbjct: 1413 IIEFMTLHSVLDGL 1426



 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 34/80 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L  H++ S ++     + +     +  Q A+A+TDT N+    E S      G++ I 
Sbjct: 331 IELHAHTNMSAMDAVTDFSGVAKLAKSWGQTALAVTDTGNVQGFPEASAAGAKNGLKMIY 390

Query: 72  GCQLDIDMQDNLKMTNQGKT 91
           G + ++         N  +T
Sbjct: 391 GMEANLVEDGEPIGFNLDQT 410


>gi|291530449|emb|CBK96034.1| DNA polymerase III catalytic subunit, PolC type [Eubacterium siraeum
            70/3]
          Length = 1605

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 154/885 (17%), Positives = 279/885 (31%), Gaps = 169/885 (19%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                 ++LV    G + L  L+S   L D   +  RI  S L +   EGLI+ +   +G 
Sbjct: 778  PTYHQIILVKNKVGLKNLYRLISASNL-DYFYKKPRIPKSLLSQY-REGLIIGSACEAGE 835

Query: 155  IDRAFF-FNSSQVAEKRLLTFKKLFGDRLYVNLQ---------RHR-----GYDRYRESQ 199
            + RA     S +  E+    +        Y+ +Q         R+         R     
Sbjct: 836  LFRAILEKESQEKIEEIASFYD-------YLEIQPIGNNMFLLRNGKVSSEEDLRDLNRA 888

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            +V+L      P+VAT +  F   ED    +VL A        +    +        +   
Sbjct: 889  IVELGDRLGKPVVATCDVHFKDPEDAVFREVLQAGQ----GYEDFANQPPLYFRTTDEML 944

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
                +    +A E  +    R + +++V  PI         D      + EL+       
Sbjct: 945  EEFAYLGEEKAKEVVITNTNRIADMIEVVRPIPTGTYTPHIDG----ADEELQQLCWDRA 1000

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                           +   +RL  EL+ I +  F+  ++I    + +++KN   VG  RG
Sbjct: 1001 HAWYGDNL------PETVEKRLKKELDSIIKHGFAVLYMIAQKLVAFSEKNGYLVG-SRG 1053

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   SV A    I++++PL                                         
Sbjct: 1054 SVGSSVVAIMAGISEVNPLPPHYRCPKCRHNEFILDGSYGSGFDLPPKKCPNCDIDMIRD 1113

Query: 400  -FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
               + FE FL  D    PD D++F  + + +V RY +  +G + V +  T  ++Q K A 
Sbjct: 1114 GHDIPFETFLGFDGDKSPDIDLNFSGEVQGKVHRYTEELFGKDHVFKAGTISAVQEKTAE 1173

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
              V +                        +   I+                    ++   
Sbjct: 1174 GFVRK---------------WLEKKGMTANSAEISR-------------------LAAGC 1199

Query: 519  EGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDF 573
             G+ R  S H  G+V    D  +     +        SD+  T F+   +    ++K D 
Sbjct: 1200 TGVKRTTSQHPGGMVVVPSDYEVYDFTAVQHPADKTESDMITTHFDFHALHDT-ILKLDE 1258

Query: 574  LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
            LG    TL +       +    + ++ +P  D +   L T+   LGI + +         
Sbjct: 1259 LGHDVPTLYKH-----LEDMTGIKIADVPTSDPKVMELFTSTEPLGIKEEDLGVSSGTYG 1313

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +      +  ++   +P    +++  +   +G +  +     +      T   +I   
Sbjct: 1314 IPEFGTPFTL-QMLKDAQPKKFSDLLQISGLSHGTDVWLGNAQDLISDGTCTISEVIGCR 1372

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
              + +  +  G     A  +   M    K    K     I  A +        +   + +
Sbjct: 1373 DDIMVYLMHQGLEPKLAFKI---MEITRKGNAKKLFNEDIYKAFEENNVPQWYIESCKKI 1429

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF-------- 805
                 Y F K+HAAAY   + +  W K +YP EF +A +T   +N++             
Sbjct: 1430 ----KYMFPKAHAAAYVTGAVKLCWFKVYYPSEFYSAVLTKHTENIDVKTVLGGKESVRN 1485

Query: 806  ------------------------CQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLA 840
                                      +     I  +P          + + D  +     
Sbjct: 1486 KIQLIQSNPEATAKDKGMLDALLLIYEMMLRGITFLPVDYKKSRATTYAIEDGNLRLPFL 1545

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            A++G G   A  + E      F  LED  +      +N  VL  L
Sbjct: 1546 AVEGCGENAAIKLKEVIDKGDFICLEDIQA---QSGINSTVLSKL 1587



 Score = 63.7 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG----- 66
           V L +H++ S ++   + + ++ +  A    A+AITD  N  +  E              
Sbjct: 501 VELHMHTNMSDMDAVTAPSVLVKQAHAWGHKAVAITDHGNAQAYPEAMNTVEKINKDDPD 560

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
            + I G +       N  +    K     
Sbjct: 561 FKVIYGLEAYFVNDGNAVVDGCDKVKIED 589


>gi|227524394|ref|ZP_03954443.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290]
 gi|227088625|gb|EEI23937.1| DNA polymerase III PolC [Lactobacillus hilgardii ATCC 8290]
          Length = 1438

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 141/898 (15%), Positives = 287/898 (31%), Gaps = 167/898 (18%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
              + N  MT             V++     G + + ++VS    +D   +  R+  + L+
Sbjct: 591  HDELNDHMTENDAYKHARPSHAVIIAKNQVGLKNMFKIVSLSN-VDYFFRVPRVPRTQLE 649

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--------- 188
            +   EG+I+ +  SSG +  A        A K+   +        Y+ +Q          
Sbjct: 650  KF-REGIIVGSACSSGEVFTAMMQKGMDEARKKAGFYD-------YLEVQPKRAYAPLIE 701

Query: 189  -HRGYD----RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
             H   D        + +V+L    + P+VAT +  +L+ +DY    +L+           
Sbjct: 702  SHLISDEANLEEILTNIVKLGDELKKPVVATGDVHYLNPQDYIYRKILINSQGGA-NPLN 760

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
             +          N       F    +A E  V    R +  +    P+  R    + +  
Sbjct: 761  RQELPDLHFLTTNEMLDDFAFLGAEKAKEIVVTNTNRIADDIDDVHPLKDRLYTPKMEG- 819

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                E+E++ + +                  +    RL  EL  I    FS  +LI    
Sbjct: 820  ---SEDEIKERTMTTAHQWYGDPL------PKIVDDRLKTELKSIIGNGFSVIYLIAQRL 870

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------ 399
            +  + K+   VG  RGS   S+ A    IT+++PL                         
Sbjct: 871  VAKSNKDGYLVG-SRGSVGSSLIATLTGITEVNPLPPHYRCPNCQHTEFFTKGEYSSGYD 929

Query: 400  -----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
                              ++ FE FL      +PD D++F  D +     Y +  +G + 
Sbjct: 930  LPRKKCPECGTQMIGDGHNIPFETFLGFTGNKVPDIDLNFSGDYQPIAHNYTKVLFGEKN 989

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            V +  T G++  K A   V +A +       R                   ++ R     
Sbjct: 990  VFRAGTIGTVADKTAYGYV-KAYERDKGTTYRQA-----------------EEDRL---- 1027

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRSDLPVTQFNM 560
                        ++   G+ R    H AGI  V  D  +    P+      D     +  
Sbjct: 1028 ------------AKGATGVKRTTGQHPAGIIVVPADMDIYDFTPIQYPA--DDQTAAWKT 1073

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
               +   +   + L +  L     ++  + Q    ++   IP DD     + ++   LG+
Sbjct: 1074 THFDFHSIH-DNILKIDILGHDDPTMIRMLQDLSGINPKSIPMDDPGVMSIFSSPKILGV 1132

Query: 621  F--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
               Q++S      +       +  ++       P     ++  +   +G +  +     +
Sbjct: 1133 SEEQIQSKTGTLGVPEFGTRFVRGMLEQT---HPSNYSELLQISGLSHGTDVWLGNADEL 1189

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
                  T   +I     +    +  G     +  +  ++        D     +     K
Sbjct: 1190 IKNGTATIANVIGCRDNIMTDLIQWGLDSELSFQIMESVRHGRGIPDD-----WQEEMRK 1244

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
              I +    +  ++      Y F ++HAAAY +++ + A+ K ++P+ + AA  ++  D+
Sbjct: 1245 AKIPEWYIDSCLKI-----KYMFPRAHAAAYILMALRIAYFKVYFPLVYYAAYFSVRADD 1299

Query: 799  VEKIKK---------------------------------FCQDARQFNIQIMPPSVNTPC 825
             + +                                      +  +         +    
Sbjct: 1300 FDIVSMCRGKEAVKNAMKQINDKGMEASTKEKNLLTVLELANEMLERGYVFKMVDLKKSA 1359

Query: 826  VD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
             + + +  N +     ++ G+G   A+ I+ A  DKPF S ED   R    K+++ ++
Sbjct: 1360 ANQWLIDGNNLIAPFNSVPGLGLNVAKQIVAAREDKPFISKEDLSKR---GKVSKTLI 1414



 Score = 82.5 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+S S ++   ++ +   +  A   PA+AITD   +    +         ++ + 
Sbjct: 333 VELHLHTSMSQMDATNNIADYAKQAKAWGHPALAITDHAAVQGFPDAFHAGQKNDLKMLY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G ++++         N    P      +V 
Sbjct: 393 GVEINLVDDGVPITYNDKHIPLKDATYVVF 422


>gi|37784580|gb|AAP47641.1| DnaE precursor [Oscillatoria limnetica str. 'Solar Lake']
          Length = 254

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 117/222 (52%), Gaps = 10/222 (4%)

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
            A   FNKSH+ AY  ++YQTA++K +YP+E++AA +T   DN +K++++        I 
Sbjct: 33  IASNCFNKSHSMAYGYVTYQTAYLKANYPIEYMAALLTANSDNQDKVQRYIATCLNMGIA 92

Query: 816 IMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS 874
           + PP +N   VDF     +I + L A++ VG      I+E+   D PF +L D C RVD 
Sbjct: 93  VEPPDINRSGVDFTPLSGKILFGLNAVRNVGHAAILCILESREKDGPFQNLADLCDRVDL 152

Query: 875 KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
           + +NRR LESL+  GA+DC   +R QLL+ L  +  +A    K+R +   +IF     + 
Sbjct: 153 RTVNRRALESLIQCGAMDCLNSNRHQLLEDLGYVIDWAHTRAKDRASGQGSIFDLFGDSQ 212

Query: 935 SDK---------ITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
            ++             + +      +   E+ +LGFY S HP
Sbjct: 213 EEQPQKKGLEQAPKAPEVADFTPQEKLRLEKDLLGFYISDHP 254


>gi|313638095|gb|EFS03362.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            seeligeri FSL S4-171]
          Length = 1444

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 146/892 (16%), Positives = 271/892 (30%), Gaps = 174/892 (19%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +D     N  M               +   TA G + L +L++   + +   +  RI  
Sbjct: 596  DIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYFYRVPRIPR 654

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NL 186
            S L ++  EGLI+ T  S G +  A      Q AEK    +   ++    +Y       L
Sbjct: 655  SQLNKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVADFYDFIEIQPKPVYAPLIEREL 713

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R           +V++      P+VAT N  +      + +  ++  +           
Sbjct: 714  VRDEKALEEILKNIVRVGEKAGKPVVATGNVHYKDP-VDKIYRKILIYSQGGANPLNRAE 772

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                     +       F    +A E  V  +      ++   PI       + D     
Sbjct: 773  LPDVHFRSTDEMLKEFAFLGEEKAKEVVVTNSNLVVDWIEDLKPIKDELYTPKIDG---- 828

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+E+RN + +       +         +    RL+ EL  I    F+  +LI    ++ 
Sbjct: 829  AEDEVRNMSYSMAHQLYGE------TLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKK 882

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            +  +   VG  RGS   S  A    IT+++PL                            
Sbjct: 883  SLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKHSEFFDDGSIGSGFDLPD 941

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL      +PD D++F  D +     Y +  +G + V +
Sbjct: 942  KDCPHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFR 1001

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V               +    +    +    I             
Sbjct: 1002 AGTIGTVAEKTAFGYV---------------RNYEREMNMTIRGAEIDR----------- 1035

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVR---SDLPVTQFNM 560
                    +     G+ R    H  GI+       +    P+        S+   T F+ 
Sbjct: 1036 --------LVAGCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATDSEWKTTHFDF 1087

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY----------- 609
              I    ++K D LG    T ++   D          +     D  + +           
Sbjct: 1088 HSIHD-NVLKLDILGHDDPTAIRMLQDLSG--IDPKTIPTDDPDVMKLFGSTESLGVKPA 1144

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             + +  GTLGI +  +  +RQ LE  +P    +++ +  L                N +E
Sbjct: 1145 DIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG-------TDVWLGNAEE 1197

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I +    +  ++     ++++         +  G   S A  +  ++ K      + ++
Sbjct: 1198 LIKNKTCELPDVIGCRDDIMVFL--------IYQGLESSLAFKIMESVRKGKGLTEEMEE 1249

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
                +               +    K   Y F K+HAAAY +++ + A+ K H+P+ F A
Sbjct: 1250 AMMANK----------VPLWYIESCKKIKYMFPKAHAAAYVLMAVRIAYFKVHHPLFFYA 1299

Query: 790  ASMTLEMDNVEKIKK---------------------------------FCQDARQFNIQI 816
               T+  D+ +                                        +        
Sbjct: 1300 TYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHF 1359

Query: 817  MPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
                +     D F +  + +     AI  +GT  A+ I+ A  +  F S ED
Sbjct: 1360 QKVDLYKSSADEFIIDGDSLIPPFNAIPSLGTNVAKQIVAARENGEFLSKED 1411



 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 342 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 401

Query: 72  GCQLDIDMQD 81
           G + ++    
Sbjct: 402 GIEANLIDDG 411


>gi|163787272|ref|ZP_02181719.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium ALC-1]
 gi|159877160|gb|EDP71217.1| DNA polymerase III, alpha subunit [Flavobacteriales bacterium ALC-1]
          Length = 336

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 77/205 (37%), Gaps = 11/205 (5%)

Query: 839  LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GY 896
            + AIKGVG    + I+E    D  + S+ D   R+D +  N++  E L  AG  DC+   
Sbjct: 1    MGAIKGVGHGAVKTIVEGRKEDGHYKSIFDLAKRIDLRAANKKAFEGLANAGGFDCWPDT 60

Query: 897  SRMQLLQS-------LDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
             R Q           L+   KY    ++N  +   ++F         +  +       + 
Sbjct: 61   HRAQYFSHDGDGITFLEKAVKYGAKHQENENSAQISMFGAASDVQIAEPIVPPCEDWGTM 120

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR--GNNIRLAAMVVSKQQK 1007
             +   E+ V+G Y SGHPLD +K  ++                    +    +V   Q +
Sbjct: 121  EKLSREKEVVGIYISGHPLDDFKIEMKTFCNGNIALFNDLNSVLNREVTFGGVVTDVQHR 180

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             +++G      T  +    +E   F
Sbjct: 181  VSKQGKGWALFTIEDYTDSFEFRIF 205


>gi|329667117|gb|AEB93065.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii DPC 6026]
          Length = 1432

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 145/898 (16%), Positives = 289/898 (32%), Gaps = 198/898 (22%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                + +L    EG + + +LVS         +  R   S L++   +GL+  +G   G 
Sbjct: 604  KPSHMSVLALNQEGLKNMYKLVSLASTK-YFYRIPRTPKSELRKYH-KGLLFGSGCWQGD 661

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ----------RHRGYDRYRESQVVQ-- 202
            +  +        A ++   +        Y+ +Q               D     +++Q  
Sbjct: 662  VFISMMQKGYDEAREKARFYD-------YLEVQPPAAYQTLIEDDLIKDEDELHEIIQNI 714

Query: 203  --LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
              L      P+VAT++S ++   +     +L+A         K+ P +      +     
Sbjct: 715  YKLGKELNKPVVATSDSHYVEPHEAIYRKILLAAQKGNSNRNKNLPDLHFYSTQEMLDAF 774

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
              +  D+  A E  ++   + +  ++  API         +      + E+++       
Sbjct: 775  SFLGEDV--AKEIVIDNTNKLADQIEEIAPIKSGLYPPHIE----NADQEMKDLTYNKAY 828

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                +         +    R++ ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 829  ELYGKPL------PKIVEDRIELELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 881

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 882  VGSSLVATMSGITEVNPLAPHYRCPNCKYSKFFENGEYGSGYDLPDKECPKCGTPLVKDG 941

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + F  FL      +PD D++F  D +     Y++  +G +   +  T  ++  K A  
Sbjct: 942  QDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNYIRVMFGPDNSFRAGTIATVADKTAYG 1001

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V                            +   D++              L  ++    
Sbjct: 1002 YV----------------------------KHYEDENELHLRNAE------LDRLAAGAS 1027

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGIV+      +    P+             T F+   I    ++KFD L
Sbjct: 1028 GVKRTTGQHPAGIVVVPDDMDIYDFTPVQYPADDLSAAWLTTHFDFHSIHD-NILKFDIL 1086

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGI 620
            G    T+++     + Q    VD   IP DD     L ++                TLG+
Sbjct: 1087 GHDDPTMIR-----MLQDLSGVDPLTIPPDDPGVMSLFSSPEILGVTPEQIQSKTGTLGV 1141

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +R  LE  +P    +++ +  L                N ++ I +    +  
Sbjct: 1142 PEFGTKFVRGMLEETKPTTFSELLQISGLSHG-------TDVWLGNAEDLINNGTCKLKN 1194

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            ++     ++        +  +  G     A     ++        +  +    +    + 
Sbjct: 1195 VIGCRDNIM--------MDLIHWGVKPEVAFFTMESVRHGRGISDENMEILKKNDKIPDW 1246

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
               +              Y F K+HA AY +++ + AW K +YPV + A+  ++  D  +
Sbjct: 1247 YIPSCLKI---------KYMFPKAHATAYILMALRIAWFKVYYPVIYYASYFSVRADLFD 1297

Query: 801  KIKK---------------------------------FCQDARQFNIQIMPPSVNTPCV- 826
             +                                      +  +  I+I    VN     
Sbjct: 1298 LVAMSHGKNTVKAAMKEIQDKGMDVSAKDKSLLTVLEIANECLERGIKIKMVDVNESEAT 1357

Query: 827  DFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            DFK+  D+ I     A+ G+G   A+ I+ A A++ F S ED  +R    K+++ ++E
Sbjct: 1358 DFKIIDDHTILAPFNAVPGLGDNAAKQIVAARAEQKFLSKEDLATR---GKVSQTIME 1412



 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   + ++ +       Q AIAITD  ++ S  E      +  ++ + 
Sbjct: 329 VELHLHTNMSQLDATSTASDFIKTAKKFGQKAIAITDHADVQSFPEAYHTGASEKMKILY 388

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N  +  +     ++ 
Sbjct: 389 GYEANMIDDHALLVLNPTEMDYRNREYVIF 418


>gi|42519364|ref|NP_965294.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533]
 gi|41583652|gb|AAS09260.1| DNA polymerase III alpha subunit [Lactobacillus johnsonii NCC 533]
          Length = 1432

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 142/886 (16%), Positives = 287/886 (32%), Gaps = 174/886 (19%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                + +L    EG + + +LVS         +  R   S L++   +GL+  +G   G 
Sbjct: 604  KPSHMSVLALNQEGLKNMYKLVSLASTK-YFYRIPRTPKSELRKYH-KGLLFGSGCWQGD 661

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ----------RHRGYDRYRESQVVQ-- 202
            +  +        A ++   +        Y+ +Q               D     +++Q  
Sbjct: 662  VFISMMQKGYDEAREKARFYD-------YLEVQPPAAYQTLIEDDLIKDEDELHEIIQNI 714

Query: 203  --LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
              L      P+VAT++S ++   +     +L+A         K+ P +      +     
Sbjct: 715  YKLGKELNKPVVATSDSHYVEPHEAIYRKILLAAQKGNSNRNKNLPDLHFYSTQEMLDAF 774

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
              +  D+  A E  ++   + +  ++  API         +      + E+++       
Sbjct: 775  SFLGEDV--AKEIVIDNTNKLADQIEEIAPIKSGLYPPHIE----NADQEMKDLTYNKAY 828

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                +         +    R++ ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 829  ELYGKPL------PKIVEDRIELELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 881

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 882  VGSSLVATMSGITEVNPLAPHYRCPNCKYSKFFENGEYGSGYDLPDKECPKCGTPLVKDG 941

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + F  FL      +PD D++F  D +     Y++  +G +   +  T  ++  K A  
Sbjct: 942  QDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNYIRVMFGPDNSFRAGTIATVADKTAYG 1001

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V                            +   D++     +        L  ++    
Sbjct: 1002 YV----------------------------KHYEDENELHLRKAE------LDRLAAGAS 1027

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGIV+      +    P+             T F+   I    ++KFD L
Sbjct: 1028 GVKRTTGQHPAGIVVVPDDMDIYDFTPVQYPADDLSAAWLTTHFDFHSIHD-NILKFDIL 1086

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEG 634
            G    T+++     + Q    VD   IP DD     L ++   LG+         +    
Sbjct: 1087 GHDDPTMIR-----MLQDLSGVDPLTIPPDDPGVMSLFSSPEILGV--TSEQIQSKTGTL 1139

Query: 635  MQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL--IDPMLKETQGVIIYQ 692
              P+     +  +         + ++  +  +    +   +    I+    + + VI  +
Sbjct: 1140 GVPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINNGTCKLKNVIGCR 1199

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            + +M    +  G     A     ++        +  +    +    +    +        
Sbjct: 1200 DNIMM-DLIHWGVKPEVAFFTMESVRHGRGISDENMEILKKNDKIPDWYIPSCLKI---- 1254

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK-------- 804
                  Y F K+HA AY +++ + AW K +YPV + A+  ++  D  + +          
Sbjct: 1255 -----KYMFPKAHATAYILMALRIAWFKVYYPVIYYASYFSVRADLFDLVAMSHGKNTVK 1309

Query: 805  -------------------------FCQDARQFNIQIMPPSVNTPCV-DFKV-GDNRIYY 837
                                        +  +  I+I    VN     DFK+  D+ I  
Sbjct: 1310 AAMKEIQDKGMDVSAKDKSLLTVLEIANECLERGIKIKMVDVNESEATDFKIIDDHTILA 1369

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
               A+ G+G   A+ I+ A A++ F S ED  +R    K+++ ++E
Sbjct: 1370 PFNAVPGLGDNAAKQIVAARAEQKFLSKEDLATR---GKVSQTIME 1412



 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   + ++ +       Q AIAITD  ++ S  E      +  ++ + 
Sbjct: 329 VELHLHTNMSQLDATSTASDFIKTAKKFGQKAIAITDHADVQSFPEAYHTGASEKMKILY 388

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N  +  +     ++ 
Sbjct: 389 GYEANMIDDHALLVLNPTEMDYRNREYVIF 418


>gi|238916793|ref|YP_002930310.1| DNA polymerase III subunit alpha, the Gram-positive type [Eubacterium
            eligens ATCC 27750]
 gi|238872153|gb|ACR71863.1| DNA polymerase III subunit alpha, the Gram-positive type [Eubacterium
            eligens ATCC 27750]
          Length = 1513

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 154/916 (16%), Positives = 285/916 (31%), Gaps = 162/916 (17%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            D+D  +     ++           ++L S   G   L  LVS  +L     +  +I  S 
Sbjct: 642  DVDKLNEEGKMDENAIKKLHQYHCIILASNEMGRINLYRLVSASHLQ-YFNRFPKIPKSL 700

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------- 188
            + +   EGLI+ +   +G + R+     S+    R++ F        Y+ +Q        
Sbjct: 701  VNQY-REGLIIGSACEAGELFRSLVNGRSEAEIARIVNFYD------YLEIQPIGNNRFM 753

Query: 189  ---------HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
                     +    R    ++V+L      P+VAT +  FL+ ED     ++MA      
Sbjct: 754  IEKEDCYVQNEEDLRNLNRRIVELGDKFGKPVVATCDVHFLNPEDEVYRRIIMAG----K 809

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                   +     +          +    +A E  V    +   + +   P+ P      
Sbjct: 810  GFDDADNQAPLYLHTTEEMLHECDYLGSDKAYEVVVTNTNKIMDMCEEIEPVRPDKCPPF 869

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
             +      +  LR                      Q   +RL+ ELN I    +S  ++I
Sbjct: 870  IE----NSDQMLRTICENRAHEIYGP------ELPQIVTERLERELNSIISNGYSVMYII 919

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------- 399
                +  +  +   VG  RGS   S+ A    IT+++PL                     
Sbjct: 920  AQKLVWKSNDDGYLVG-SRGSVGSSLAATMAGITEVNPLSPHYLCPKCYYNDFYSDEVKA 978

Query: 400  -------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                     F + FE FL       PD D++F  + + +   Y 
Sbjct: 979  FAGGAGCDMPDKICPKCGAKLNKMGFDIPFETFLGFKGNKEPDIDLNFSNEYQSKAHAYT 1038

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            +  +G  +  +  T G++  K A   V +     Y +       +   P        I  
Sbjct: 1039 EVIFGKGQTFKAGTIGTVAEKTAYGFVMK-----YFEEKSAKNALEGKPPIVKRKCEIER 1093

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRSD 552
                               I++    + R    H  GIV+      +    P+       
Sbjct: 1094 -------------------IAEGCIDIRRTTGQHPGGIVVLPIGEEIHSFTPVQHPANDM 1134

Query: 553  LP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
                VT           L+K D LG    T+++     + Q    +D   IP D  E   
Sbjct: 1135 TTSIVTTHFDYHSIDHNLLKLDILGHLDPTMIR-----MLQDLTGIDPLEIPLDSKEVMS 1189

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            L      LGI   +  G +    G+     +  + ++   +P    ++V      +G + 
Sbjct: 1190 LFQNTSALGIKPEDIGGTKLGALGIPEFGTDFAMQMLMDTKPQYFSDLVRIAGLAHGTDV 1249

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK-KIKEEMDKQK 729
             +     +    K T    I     + I  +  G    E+  +   + K K+     K+ 
Sbjct: 1250 WLGNAQTLIKEGKATISTAICTRDDIMIYLIQKGLDSEESFKIMEMVRKGKVASGKCKEW 1309

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              +      +G+      +   +      Y F K+HAAAY +++++ A+ K  YP+ +  
Sbjct: 1310 PEWKQDMIDHGVPDWYIWSCERI-----KYMFPKAHAAAYVMMAWRVAYCKVFYPLAYYT 1364

Query: 790  ASMTLEMDNVEK-----------------------------------IKKFCQDARQFNI 814
            A  ++     +                                    + +  Q+      
Sbjct: 1365 AYFSIRATAFDYEKMAMSPVRLEHYIAEYKAKKAEGTISNTEEDELGVMRIVQEMHARGY 1424

Query: 815  QIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
            +  P  +       F++ D +I  S   I  VG      I  A+ D  F S +D   R  
Sbjct: 1425 EFTPIDIYKAKARTFQIIDGKIMPSFKVISKVGEVAGESIEIAARDGEFLSKDDLRQRA- 1483

Query: 874  SKKLNRRVLESLVFAG 889
              K+ +  ++ L   G
Sbjct: 1484 --KIGQSAIDKLSELG 1497



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 11/97 (11%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE-FS----------Q 60
           V L  H+  S ++G   +++I+ +       AIAITD   + +  + F           +
Sbjct: 377 VELHCHTKMSDMDGVSYVSDIIKQAIRWGHKAIAITDHGVVQAFTDAFHTMSDLKGSYAK 436

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           K      + I G +  +       +TN     F    
Sbjct: 437 KGEKLDFKIIYGVEAYLVDDTKQIVTNPRGQSFNDTY 473


>gi|329929349|ref|ZP_08283102.1| DNA polymerase III, alpha subunit, Gram-positive type [Paenibacillus
            sp. HGF5]
 gi|328936718|gb|EGG33161.1| DNA polymerase III, alpha subunit, Gram-positive type [Paenibacillus
            sp. HGF5]
          Length = 1438

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 156/909 (17%), Positives = 294/909 (32%), Gaps = 160/909 (17%)

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            + M D L                 +      G + L +L+S  +  +  K+   I  S L
Sbjct: 590  VKMLDRLNDYVGTDLSNTRPFHCGIYALNMTGKKNLYKLISMSHT-EYFKRVPCIPKSKL 648

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQR---HRG 191
            QE+  +GL++L+G   G         + + AE+    +   ++    +Y++L        
Sbjct: 649  QEM-RDGLLVLSGCEKGEFFETVLNKTEEEAEEIAGFYDVLEIQPLTMYMHLVDKGLVGS 707

Query: 192  YDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             +  +   S+VV++      P++AT N  +L   D    D+ +         +  R +  
Sbjct: 708  PEEIKTAISKVVRIGEKLNKPVIATGNVHYLEPRDKLFRDITIHGITGFSPLKDMR-KPD 766

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                          F    +  E  V      +   +       +      D      + 
Sbjct: 767  AHFRTTEEMLQEFEFLGQDKCYEVVVTNTSELADRFEELELFPDKLFTPILDG----ADE 822

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            E+RN      +    +         +    RL+ EL  I +  FS  +LI    ++ + +
Sbjct: 823  EIRNTCYDTAKSIYGENL------PEVVVARLEKELEPIIKYGFSANYLISEKLVKKSNR 876

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFS---------------------------- 401
            +   VG  RGS   SV A  L I++++PL                               
Sbjct: 877  DGYLVG-SRGSVGSSVVATFLGISEVNPLPAHYICLNSDCKHSEWFLDGSVPSGFDLPDK 935

Query: 402  ---------------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  + +     + +  +G E V + 
Sbjct: 936  ACPECGNMMKGEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPHAHNFTKEMFGEENVFRA 995

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A     +  +                                        
Sbjct: 996  GTIGTVAEKTAFGFAKKYEEHN----------------------------------NKRW 1021

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMYRDVRS---DLPVTQFNMK 561
                L  ++    G+ R    H  GIV+    +   ++ P+         +   T F+  
Sbjct: 1022 RGAELNRLASGCTGVKRSTGQHPGGIVVVPDYIEVEEITPVQFPADDVNAEWKTTHFDYH 1081

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
              E   L+K D LG    T+++     + Q    VD + IP +D +   +  +   LG+ 
Sbjct: 1082 AFEA-NLLKLDILGHDDPTMMR-----MLQDLTGVDPTTIPMNDPKVMSMFNSTEALGVK 1135

Query: 622  --QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
              Q+ S      +  M    +  +  LV        D + +          + +   LI 
Sbjct: 1136 PEQIRSPVATFGVPEMGTKFVRQM--LVESQPSSFADLLQISGLSHGTGVWLGNAQELIK 1193

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
                  + VI  ++ +M      +G   S A  +  ++ K      +     +I    K 
Sbjct: 1194 NGTCNIKTVIGCRDDIMLFLIYKAGMDASLAFKITESVRKGRGLSQE-----WIDEMKKC 1248

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL----- 794
             + +    +  ++      Y F K+HAAAY + + +TA+ K +YP+E+ A   ++     
Sbjct: 1249 KVPQWYIDSCLKI-----QYMFPKAHAAAYVISAVRTAYFKLYYPIEYYATYFSVRAEDF 1303

Query: 795  ----EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV------------------------ 826
                     E I +  ++  Q      P       +                        
Sbjct: 1304 DIELCCQGYEAIYRRIEEIEQLGFGASPKEKGMLPILEMALEMTARGFSFKNIDLYQSDA 1363

Query: 827  -DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
              FKV  + +    +A+ G+G   AR+I  A     F S+EDF  +    K ++  +E L
Sbjct: 1364 LRFKVDGDSLIPPFSALAGIGDNAARNIAAAREFGEFLSIEDFQQK---SKASKTAVELL 1420

Query: 886  VFAGALDCF 894
               G     
Sbjct: 1421 TQMGCFRGL 1429



 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++    ++  +   AA    AIA++D   +    + ++ A   GI+ + 
Sbjct: 335 VEFHLHTTMSTMDAVTPIDRYIKTAAAWGHKAIAVSDHGGVQCYPDAAKNAKKHGIKMMY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       +         +   +V 
Sbjct: 395 GVEANVVNDAVNIVEQAQPIELSSATYVVF 424


>gi|253573562|ref|ZP_04850905.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786
            str. D14]
 gi|251847090|gb|EES75095.1| DNA polymerase III, alpha subunit [Paenibacillus sp. oral taxon 786
            str. D14]
          Length = 1438

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 153/905 (16%), Positives = 294/905 (32%), Gaps = 160/905 (17%)

Query: 81   DNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIG 140
            D L                 +      G + L +L+S  +  +  K+   I  S L E+ 
Sbjct: 594  DRLNDKVGKDLSNARPFHCGIYALNPVGKKNLFKLISLSHT-EYFKRVPCIPKSKLVEL- 651

Query: 141  TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQRHR-----GYD 193
             EGL++L+G   G         S + AE     +   ++    +Y++L            
Sbjct: 652  REGLLILSGCEKGEFFETVLNKSVEEAEAVAEFYDVLEIQPLTMYMHLVEKGLVGSTEEL 711

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +    ++V++    + P+VAT N  +L  +D    D+ +         ++ R +      
Sbjct: 712  QTAIRKIVEIGMKLDKPVVATGNVHYLDPKDKLFRDITIHGITGFSPLKEVR-KPDAHFR 770

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
                      F    +A E  V      +   +       +      +      + E+R 
Sbjct: 771  TTEEMLEEFAFLGQEKAWEVVVTNTSALADRFEEIELFPDKLFTPIIEG----ADEEIRQ 826

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            K            +I      +   +RL+ EL  I +  FS  +LI    ++ + ++   
Sbjct: 827  KCYD------TAKSIYGEELPEVIVKRLEKELEPIIKYGFSANYLISERLVKKSNQDGYL 880

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLRFS-------------------------------- 401
            VG  RGS   SV A  L I++++PL                                   
Sbjct: 881  VG-SRGSVGSSVVALFLGISEVNPLPAHYICQNPECKYSEWFLDGSVPSGFDLPDKSCPK 939

Query: 402  -----------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
                       + FE FL      +PD D++F  + +     Y +  +G + V +  T G
Sbjct: 940  CGGKLKGEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPVAHNYTKVLFGEKNVFRAGTIG 999

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            ++  K A     +  +                                            
Sbjct: 1000 TVAEKTAFGFAKKYEE----------------------------------EHNKHWRGAE 1025

Query: 511  LLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMYRDVRS---DLPVTQFNMKWIEK 565
            L  ++    G+ R    H  GIV+    +    + P+         +   T F+    + 
Sbjct: 1026 LNRLAAGCTGVKRSTGQHPGGIVVVPDYIDVEDITPVQYPADDTESEWKTTHFDYHAFDA 1085

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QL 623
              L+K D LG    T+++     + Q    VD + IP +D +   +  +   LG+   Q+
Sbjct: 1086 -NLLKLDILGHDDPTMMR-----MLQDLTGVDPTTIPMNDPKVMSMFNSTDALGVTPEQI 1139

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +      +  M    +  +  LV        D + +          + +   LI     
Sbjct: 1140 RTPVATYGIPEMGTKFVRQM--LVESQPSSFADLLQISGLSHGTGVWLGNAQELIKNGTC 1197

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
              + VI  ++ +M      +G     A  +  ++ K      +     +I    K  + +
Sbjct: 1198 NIKTVIGCRDDIMLYLIYKAGMDAGLAFKITESVRKGKGLTPE-----WIEEMKKCKVPQ 1252

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE-------- 795
                +  ++      Y F K+HAAAY + + +TA+ K +YP+E+ A   ++         
Sbjct: 1253 WYIDSCLKI-----QYMFPKAHAAAYVISAVRTAYFKLYYPIEYYATYFSVRGEDFDIEL 1307

Query: 796  -MDNVEKIKKFCQDARQFNIQIMPPSVNTPCV-------------------------DFK 829
                 E I +  ++  Q   Q +P   N   +                          F 
Sbjct: 1308 YCQGYEAIYRKIEEIEQKGFQALPKEKNMLPILEMALEMTARGFHFKPIDLYRSDATKFI 1367

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            V  + +    +A+ G+G   A++I  A     F S+EDF  +    K ++ ++E L   G
Sbjct: 1368 VDGDSLIPPFSALAGIGENAAKNIAAAKEQGEFLSIEDFQQK---SKASKTIMELLGSMG 1424

Query: 890  ALDCF 894
                 
Sbjct: 1425 CFRGL 1429



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 38/90 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++    + + +   A     AIA+TD   + S  + ++ A   GI+ I 
Sbjct: 335 VEFHLHTTMSTMDAVTPIGDYVKMAAKWGHKAIAVTDHGGVQSFPDAAKAAKKHGIKMIY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++   D   + N       T   +V 
Sbjct: 395 GVEANVVNDDVAVVLNPRGDELKTATYVVF 424


>gi|227513179|ref|ZP_03943228.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577]
 gi|227083560|gb|EEI18872.1| DNA polymerase III PolC [Lactobacillus buchneri ATCC 11577]
          Length = 1438

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 140/891 (15%), Positives = 287/891 (32%), Gaps = 153/891 (17%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
              + N  MT             V++     G + + ++VS    +D   +  R+  + L+
Sbjct: 591  HDELNDHMTENDAYKHARPSHAVIIAKNQVGLKNMFKIVSLSN-VDYFFRVPRVPRTQLE 649

Query: 138  EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL--TFKKLFGDRLY---VN--LQRHR 190
            +   EG+I+ +  SSG +  A        A K+     + ++   R Y   +   L    
Sbjct: 650  KF-REGIIVGSACSSGEVFTAMMQKGMDEARKKAGVYDYLEVQPKRAYAPLIESHLISDE 708

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                   + +V+L    + P+VAT +  +L+ +DY    +L+            +     
Sbjct: 709  ANLEEILTNIVKLGDELKKPVVATGDVHYLNPQDYIYRKILINSQGGA-NPLNRQELPDL 767

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                 N       F    +A E  V    R +  +    P+  R    + +      E+E
Sbjct: 768  HFLTTNEMLDDFAFLGAEKAKEIVVTNTNRITDDIDDVHPLKDRLYTPKMEG----SEDE 823

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            ++ + +                  +    RL  EL  I    FS  +LI    +  + K+
Sbjct: 824  IKERTMTTAHQWYGDPL------PKIVDDRLTTELKSIIGNGFSVIYLIAQRLVAKSNKD 877

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------- 399
               VG  RGS   S+ A    IT+++PL                                
Sbjct: 878  GYLVG-SRGSVGSSLVATLTGITEVNPLPPHYRCPNCQHTEFFTKGEYSSGYDLPRKKCP 936

Query: 400  ----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                       ++ FE FL      +PD D++F  D +     Y +  +G + V +  T 
Sbjct: 937  ECGTQMIGDGHNIPFETFLGFTGNKVPDIDLNFSGDYQPIAHNYTKVLFGEKNVFRAGTI 996

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
            G++  K A   V +A +       R                   ++ R            
Sbjct: 997  GTVADKTAYGYV-KAYERDKGTTYRQA-----------------EEDRL----------- 1027

Query: 510  RLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG 567
                 ++   G+ R    H AGI  V  D  +    P+      D     +     +   
Sbjct: 1028 -----AKGATGVKRTTGQHPAGIIVVPADMDIYDFTPIQYPA--DDQTAAWKTTHFDFHS 1080

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLES 625
            +   + L +  L     ++  + Q    ++   IP DD     + ++   LG+   Q++S
Sbjct: 1081 IH-DNILKIDILGHDDPTMIRMLQDLSGINPKSIPMDDPGVMSIFSSPKILGVSEEQIQS 1139

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
                  +       +  ++       P     ++  +   +G +  +     +      T
Sbjct: 1140 KTGTLGVPEFGTRFVRGMLEQT---HPSNYSELLQISGLSHGTDVWLGNADELIKNGTAT 1196

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
               +I     +    +  G     +  +  ++        D     +     K  I +  
Sbjct: 1197 IANVIGCRDNIMTDLIQWGLDSELSFQIMESVRHGRGIPDD-----WQEEMRKAKIPEWY 1251

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK- 804
              +  ++      Y F ++HAAAY +++ + A+ K ++P+ + AA  ++  D+ + +   
Sbjct: 1252 IDSCLKI-----KYMFPRAHAAAYILMALRIAYFKVYFPLVYYAAYFSVRADDFDIVSMC 1306

Query: 805  --------------------------------FCQDARQFNIQIMPPSVNTPCVD-FKVG 831
                                               +  +         +     + + + 
Sbjct: 1307 RGKEAVKNAMKQINDKGMEASTKEKNLLTVLELANEMLERGYVFKMVDLKKSAANQWLID 1366

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
             N +     ++ G+G   A+ I+ A  DKPF S ED   R    K+++ ++
Sbjct: 1367 GNNLIAPFNSVPGLGLNVAKQIVAAREDKPFISKEDLSKR---GKVSKTLI 1414



 Score = 82.5 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+S S ++   ++ +   +  A   PA+AITD   +    +         ++ + 
Sbjct: 333 VELHLHTSMSQMDATNNIADYAKQAKAWGHPALAITDHAAVQGFPDAFHAGQKNDLKMLY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G ++++         N    P      +V 
Sbjct: 393 GVEINLVDDGVPITYNDKHIPLKDATYVVF 422


>gi|295426318|ref|ZP_06818977.1| DNA polymerase III PolC [Lactobacillus amylolyticus DSM 11664]
 gi|295063991|gb|EFG54940.1| DNA polymerase III PolC [Lactobacillus amylolyticus DSM 11664]
          Length = 1435

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 138/883 (15%), Positives = 278/883 (31%), Gaps = 195/883 (22%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + +L     G + + +LVS     D   +  R   S L++   EGL+  +G   G +  
Sbjct: 610  HMTILAKNQAGLKNMYKLVSIANTKD-FYREPRTPKSALRKYH-EGLLYGSGCWRGDVFI 667

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--------------HRGYDRYRESQVVQL 203
            A        A ++   +        Y+ LQ                +       + + +L
Sbjct: 668  AMMQKGYDTAREKAKFYD-------YLELQPPATYSQLIADGLIKDKDELEEILTNIYKL 720

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                + P+VA +++ ++   +     +L++   S     K +P +      +       +
Sbjct: 721  GKELKKPVVADSDAHYVDPHEKIYRTILISAQRSNPNRNKPQPDLHFYSTQEMLDAFAFL 780

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
              D   A E  ++   + +  L+  API         D      + E+++          
Sbjct: 781  GEDA--AKEIVIDNTNKIADELEEIAPIKDGLYPPHID----NADQEMKDLTYNKAYELY 834

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
             +         +  + R+D ELN I    ++  +LI    +  + K+   VG  RGS   
Sbjct: 835  GKPL------PKIVKDRIDLELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGSVGS 887

Query: 384  SVTAYALTITDIDPLR-----------------------------------------FSL 402
            S+ A    IT+++PL                                            +
Sbjct: 888  SLVATMSGITEVNPLAPHYRCPKCKYSHFYTNGEYGSGFDLPDKNCPKCGTPLVKDGQDI 947

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             F  FL      +PD D++F  D +     +++  +G +   +  T  ++  K A     
Sbjct: 948  PFATFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPDNSYRAGTIATVADKTAYGYA- 1006

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
                                       +   ++   +           L  ++  + G+ 
Sbjct: 1007 ---------------------------KHFDEERDLKLRNAE------LDRLATGVSGVK 1033

Query: 523  RHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R    H AGIV    +  +    P+             T F+   I    ++KFD LG  
Sbjct: 1034 RTTGQHPAGIVVVPNNMDIYDFTPVQYPADDVNAAWLTTHFDFHSIHD-NILKFDILGHD 1092

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQL 623
              T+++     + Q    +D   IP DD     L ++                TLGI + 
Sbjct: 1093 DPTMIR-----MLQDLSGIDPLTIPPDDPGVMSLFSSPKILGVTPEQIQSQTGTLGIPEF 1147

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +R  LE  +P    +++ +  L                N ++ I +    +  ++ 
Sbjct: 1148 GTRFVRGMLEETKPTTFAELLQISGLSHG-------TDVWLGNAEDLINNGTCKLKDVIG 1200

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
                ++        +  +  G     A     ++        +       +    +    
Sbjct: 1201 CRDNIM--------MDLIHWGVKPEVAFSTMESVRHGKGISDENMAVLKKNKNIPDWYIP 1252

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
            +              Y F K+HA AY +++ + AW K +YP  +  A  ++  D  + + 
Sbjct: 1253 SCLKI---------KYMFPKAHATAYVLMALRIAWFKVYYPEIYYTAYFSVRADLFDLVA 1303

Query: 804  K---------------------------------FCQDARQFNIQIMPPSVNT-PCVDFK 829
                                                 +  +  I+I    V+    ++FK
Sbjct: 1304 MSHGKNTVKAAMKTIQDKGMDASAKDKSLLTVLEIANECLERGIKIKMVDVDKSEAMNFK 1363

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            +   + I     A+ G+G   A+ I+ A A++ F S ED   R
Sbjct: 1364 ILDKHTILAPFNAVPGLGDNAAKQIVAARAEQKFLSKEDLAKR 1406



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   +  + +       Q AIAITD  ++ S  E      +  I+ + 
Sbjct: 332 VELHLHTNMSQLDATSTPTDFIKTAKKFGQKAIAITDHGDVQSFPEAYHTGASEKIKILY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 392 GVEANMIDDHALLVLNPADMTYEDREFVIF 421


>gi|227534929|ref|ZP_03964978.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei
            ATCC 25302]
 gi|227187685|gb|EEI67752.1| DNA polymerase III PolC [Lactobacillus paracasei subsp. paracasei
            ATCC 25302]
          Length = 1437

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 152/903 (16%), Positives = 293/903 (32%), Gaps = 176/903 (19%)

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
             Q N ++              ++   T  G + L +LVS   +     +  R+  S LQ+
Sbjct: 587  NQLNDRVGAGDAYKAARPSHAIVFAKTQAGLKNLFKLVSLSNVK-YFYRVPRVPRSQLQK 645

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRES 198
            +  EGL++ +  S+G +  A        A  +   +        Y+ +Q    Y    E+
Sbjct: 646  L-REGLLVGSACSNGEVFTAMMQKGEAEARAKASFYD-------YLEVQPLPVYQPLIEA 697

Query: 199  QVVQ--------------LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             +++              +    E P+VAT ++ +L + D     +L+        +  +
Sbjct: 698  GLIKGEAHLKDIIQKIIKIGSELEKPVVATGDAHYLDQHDAIYRQILIHSQGG--ANPLN 755

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTV--EIARRCSFILQVHAPILPRFIEKECDD 302
            R  +   H+      +        E     V        +++     P+  +    E   
Sbjct: 756  RHSLPDVHFRSTSEMLTDFSWLGEEKAHELVVDNSNLIANWVDDDITPVKDKLYTPEVPG 815

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +    E  L++  +                      QRLD EL  I    FS  + I   
Sbjct: 816  V----EENLKHDVMTTAHELYGDPL------PDIVAQRLDKELKSIIGNGFSVIYNIAQR 865

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------- 399
             +  + K+   VG  RGS   S+ A    IT+++PL                        
Sbjct: 866  LVLKSNKDGYLVG-SRGSVGSSLAATMAGITEVNPLPPHYRCPNCQYSEFFTHGEIGSGF 924

Query: 400  ------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
                                + FE FL      +PD D++F  D +     Y++  +G +
Sbjct: 925  DLPDKQCPKCGADLHKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQPIAHNYIKVMFGED 984

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
               +  T G++  K A   V +A +    Q  R  +                        
Sbjct: 985  HSFRAGTIGTVADKTAYGYV-KAYERDTGQQLRGAE------------------------ 1019

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRSD---LPVT 556
                     +  ++Q   G+ R    H AGI+I   D  +    P+             T
Sbjct: 1020 ---------IDRLAQGDTGVKRTTGQHPAGILIVPADMDIYDFTPIQYPADDQNAAWMTT 1070

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             F+   I    ++K D LG    T+++     + Q    V+   IP DD     L +   
Sbjct: 1071 HFDFHSIHD-NILKMDVLGHDDPTMIR-----MLQDLSGVEPKSIPTDDPGVMALFSGTK 1124

Query: 617  TLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
            +LG+   Q+ S      +       +  ++      +P     ++  +   +G +  +  
Sbjct: 1125 SLGVTPEQINSKMGTLGIPEFGTRFVRGMLEET---KPTTFSELLQISGLSHGTDVWLGN 1181

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
               +      T   +I     + +  +  G   S A  +   + K      D     +  
Sbjct: 1182 AEELIKQGIVTLKEVIGCRDNIMMDLIHWGMEDSMAFNIMEHVRKGRGIPDD-----WQK 1236

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               +N       +     +     Y F K+HA AY +++ + AW K HYP+ +  A  ++
Sbjct: 1237 AMRENENVPDWYIESCLKI----KYMFPKAHATAYILMALRIAWFKVHYPLIYYTAYFSV 1292

Query: 795  EMDNVE---------------------------------KIKKFCQDARQFNIQIMPPSV 821
              ++ +                                  + +   +  +   +I    V
Sbjct: 1293 RAEDFDLAAMSHGKEAVKAAMKEITDKGMDASTKEKQLLTVLEIANECLERGFKIKMIDV 1352

Query: 822  NTP-CVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
                  +F +  D+ I     A+ G+G   A+ I+ A  +KPF S ED  +R    K+++
Sbjct: 1353 TKSDSHNFLIQDDHTILAPFRAVPGLGDNVAKQIVAAREEKPFLSKEDLANR---GKVSK 1409

Query: 880  RVL 882
             ++
Sbjct: 1410 TLI 1412



 Score = 93.7 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 37/91 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++    +++ + +       AIA+TD   L +  E    A  AG++ + 
Sbjct: 327 VELHLHTNMSQMDAMNPISDYVKRAKEWGHKAIAVTDHAGLQAYPEAHSAAVKAGLKMLY 386

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           G ++++            +         V+ 
Sbjct: 387 GVEINLVDDGTPVAYRADEPRDLASAEYVVF 417


>gi|237734614|ref|ZP_04565095.1| DNA-directed DNA polymerase [Mollicutes bacterium D7]
 gi|229382434|gb|EEO32525.1| DNA-directed DNA polymerase [Coprobacillus sp. D7]
          Length = 1440

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 144/918 (15%), Positives = 272/918 (29%), Gaps = 187/918 (20%)

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
              +  L     G + + +LVS            RI    L+    EGL+  +   +G + 
Sbjct: 594  YHMTALALNKAGLKNMFKLVSEANTK-YFHNGSRIPKERLEHY-REGLLYGSSCYNGDVF 651

Query: 157  RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY------------DRYR--ESQVVQ 202
             A    S +  E+ +  +        Y+ +Q    Y            D       +++ 
Sbjct: 652  EAALNLSDEKLERAMEFYD-------YIEIQPLEDYYHLVDRGKLQDTDELIKSLHRIID 704

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-----AHSTVVSQKDRPRVTPDHYLKNR 257
             A   +  +VAT +  FL   D    DV ++       H        R     +     R
Sbjct: 705  CAKKLDKLIVATGDVHFLEVRDKIFRDVFISNPTIGIGHRAHPLCDRRNPKAKNPCQYLR 764

Query: 258  SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
            +    +        +   E     +  +      +    +K         +  L+     
Sbjct: 765  TTNEMLEGYPYLPQDEVFEYVVTNTNKIADMVEEIKPVHDKLFTPKIDGADENLKKICYD 824

Query: 318  GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
                             Q   +RL+ EL+ I +  F   + I    ++ +  +   VG  
Sbjct: 825  TAHKTYGNPL------PQIVEKRLEKELSNIIKHGFGVIYYISHLLVKKSNDDGYLVG-S 877

Query: 378  RGSGAGSVTAYALTITDIDPLR-------------------------------------- 399
            RGS   S  A    IT+++PL                                       
Sbjct: 878  RGSVGSSFVATMSGITEVNPLPPHYVCLHCSHSEFLEEGIVADGYDLEDKVCPKCGKIMK 937

Query: 400  ---FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
                ++ FE FL  +   +PD D++F  + +     + +  +G + V +  T  ++  K 
Sbjct: 938  GEGHNIPFETFLGFNADKVPDIDLNFSGEYQANAHAFTKEIFGEDHVFRAGTISTVAEKT 997

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            A           Y       +L+  D                            L  I+ 
Sbjct: 998  A-----------YGYAKGYAELMGTDQTI---------------------RSAELERIAA 1025

Query: 517  KLEGLYRHASTHAAGIVIGDRPLS--QLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKF 571
               G+ R    H  GI++    +      P              T F+   I    ++KF
Sbjct: 1026 GCGGVKRTTGQHPGGIIVIPGDMDVFDFTPYQFPADDLNAAWKTTHFDFHAIHD-NVLKF 1084

Query: 572  DFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDHETYHLLTTKGTL-GIFQ 622
            D LG    T+ +   D                + L             +  K    G+ +
Sbjct: 1085 DILGHVDPTVTRFLQDLTGVDPKDIPTNDKKVMSLFTSSEALGCNLDFIGCKNGALGLPE 1144

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
              +S +R  L+  QP    D++ +  L     +                      +    
Sbjct: 1145 FGTSFVRGMLDQTQPKTFNDLVIISGLSHGTDVYLGNA---------------ETLIKSG 1189

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
              T   +I     + +  +  G    +A  +   + K     +  + +++     +  + 
Sbjct: 1190 TCTLSEVIGCRDDIMVYLIEKGLPNKDAFDIMECVRKGKSPVVFPE-KKYEELMKEYNVP 1248

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK- 801
            +    +  ++      Y F K+HAAAY + + + AW K +YP E+ A   T   D  +  
Sbjct: 1249 QWYIDSCKKI-----KYMFPKAHAAAYVLSAIRVAWWKLYYPREYYAVYFTTRCDFYDIE 1303

Query: 802  --------IKKFCQDARQFNIQIMPPSVNTPCVD-FKV---------------------- 830
                    I     +  Q   +    + +    D F++                      
Sbjct: 1304 TLVQGKDAIMARRAEITQLRAERSSSNKDEGLWDIFEIALEMIERGFHFNPVSLEYSQAS 1363

Query: 831  -------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                    +  +    +AI  +G + A+ +++A AD PF S ED   R    KLN   ++
Sbjct: 1364 KFILDPNDEKGLIPPFSAIDALGESVAKTVVDARADGPFLSKEDVIKRT---KLNNSHIK 1420

Query: 884  SLVFAGALDCFGYSRMQL 901
            +L   G  +     R QL
Sbjct: 1421 TLSKMGVFNGM-QERNQL 1437



 Score = 82.5 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 35/66 (53%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS  S ++G  ++   ++ +A+    AIA+TD  N+ S  E    A  AGI+ I 
Sbjct: 317 VELHTHSKMSAMDGVGTITQYINAVASWGHKAIAVTDHGNVQSFPEAQMAAGKAGIKMIY 376

Query: 72  GCQLDI 77
           G + ++
Sbjct: 377 GVEFNM 382


>gi|167756906|ref|ZP_02429033.1| hypothetical protein CLORAM_02455 [Clostridium ramosum DSM 1402]
 gi|167703081|gb|EDS17660.1| hypothetical protein CLORAM_02455 [Clostridium ramosum DSM 1402]
          Length = 1445

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 144/918 (15%), Positives = 272/918 (29%), Gaps = 187/918 (20%)

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
              +  L     G + + +LVS            RI    L+    EGL+  +   +G + 
Sbjct: 599  YHMTALALNKAGLKNMFKLVSEANTK-YFHNGSRIPKERLEHY-REGLLYGSSCYNGDVF 656

Query: 157  RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY------------DRYR--ESQVVQ 202
             A    S +  E+ +  +        Y+ +Q    Y            D       +++ 
Sbjct: 657  EAALNLSDEKLERAMEFYD-------YIEIQPLEDYYHLVDRGKLQDTDELIKSLHRIID 709

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-----AHSTVVSQKDRPRVTPDHYLKNR 257
             A   +  +VAT +  FL   D    DV ++       H        R     +     R
Sbjct: 710  CAKKLDKLIVATGDVHFLEVRDKIFRDVFISNPTIGIGHRAHPLCDRRNPKAKNPCQYLR 769

Query: 258  SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
            +    +        +   E     +  +      +    +K         +  L+     
Sbjct: 770  TTNEMLEGYPYLPQDEVFEYVVTNTNKIADMVEEIKPVHDKLFTPKIDGADENLKKICYD 829

Query: 318  GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
                             Q   +RL+ EL+ I +  F   + I    ++ +  +   VG  
Sbjct: 830  TAHKTYGNPL------PQIVEKRLEKELSNIIKHGFGVIYYISHLLVKKSNDDGYLVG-S 882

Query: 378  RGSGAGSVTAYALTITDIDPLR-------------------------------------- 399
            RGS   S  A    IT+++PL                                       
Sbjct: 883  RGSVGSSFVATMSGITEVNPLPPHYVCLHCSHSEFLEEGIVADGYDLEDKVCPKCGKIMK 942

Query: 400  ---FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
                ++ FE FL  +   +PD D++F  + +     + +  +G + V +  T  ++  K 
Sbjct: 943  GEGHNIPFETFLGFNADKVPDIDLNFSGEYQANAHAFTKEIFGEDHVFRAGTISTVAEKT 1002

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            A           Y       +L+  D                            L  I+ 
Sbjct: 1003 A-----------YGYAKGYAELMGTDQTI---------------------RSAELERIAA 1030

Query: 517  KLEGLYRHASTHAAGIVIGDRPLS--QLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKF 571
               G+ R    H  GI++    +      P              T F+   I    ++KF
Sbjct: 1031 GCGGVKRTTGQHPGGIIVIPGDMDVFDFTPYQFPADDLNAAWKTTHFDFHAIHD-NVLKF 1089

Query: 572  DFLGLKTLTLLQKSLDFL--------AQRGVKVDLSLIPFDDHETYHLLTTKGTL-GIFQ 622
            D LG    T+ +   D                + L             +  K    G+ +
Sbjct: 1090 DILGHVDPTVTRFLQDLTGVDPKDIPTNDKKVMSLFTSSEALGCNLDFIGCKNGALGLPE 1149

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
              +S +R  L+  QP    D++ +  L     +                      +    
Sbjct: 1150 FGTSFVRGMLDQTQPKTFNDLVIISGLSHGTDVYLGNA---------------ETLIKSG 1194

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
              T   +I     + +  +  G    +A  +   + K     +  + +++     +  + 
Sbjct: 1195 TCTLSEVIGCRDDIMVYLIEKGLPNKDAFDIMECVRKGKSPVVFPE-KKYEELMKEYNVP 1253

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK- 801
            +    +  ++      Y F K+HAAAY + + + AW K +YP E+ A   T   D  +  
Sbjct: 1254 QWYIDSCKKI-----KYMFPKAHAAAYVLSAIRVAWWKLYYPREYYAVYFTTRCDFYDIE 1308

Query: 802  --------IKKFCQDARQFNIQIMPPSVNTPCVD-FKV---------------------- 830
                    I     +  Q   +    + +    D F++                      
Sbjct: 1309 TLVQGKDAIMARRAEITQLRAERSSSNKDEGLWDIFEIALEMIERGFHFNPVSLEYSQAS 1368

Query: 831  -------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                    +  +    +AI  +G + A+ +++A AD PF S ED   R    KLN   ++
Sbjct: 1369 KFILDPNDEKGLIPPFSAIDALGESVAKTVVDARADGPFLSKEDVIKRT---KLNNSHIK 1425

Query: 884  SLVFAGALDCFGYSRMQL 901
            +L   G  +     R QL
Sbjct: 1426 TLSKMGVFNGM-QERNQL 1442



 Score = 82.5 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 35/66 (53%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS  S ++G  ++   ++ +A+    AIA+TD  N+ S  E    A  AGI+ I 
Sbjct: 322 VELHTHSKMSAMDGVGTITQYINAVASWGHKAIAVTDHGNVQSFPEAQMAAGKAGIKMIY 381

Query: 72  GCQLDI 77
           G + ++
Sbjct: 382 GVEFNM 387


>gi|153854163|ref|ZP_01995471.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814]
 gi|149753212|gb|EDM63143.1| hypothetical protein DORLON_01462 [Dorea longicatena DSM 13814]
          Length = 1513

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 157/991 (15%), Positives = 307/991 (30%), Gaps = 211/991 (21%)

Query: 53   FSA-----LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
              A     ++F +     GI        D+   +     N           +++L     
Sbjct: 618  AGATAEIFVKFVEMLKDRGI-------YDLAKLNQFGENNADAVRKLPSYHVIILALNEV 670

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            G   L  L+S  +L     +  RI  S L +   EGL++ +   +G + +A   + S+  
Sbjct: 671  GRVNLYTLISMSHLK-YYARRPRIPKSELSKY-REGLLVGSACEAGELYQAILNDKSEER 728

Query: 168  EKRLLTFKKLFGDRLYVNLQRHRGYD-----------------RYRESQVVQLAYTHELP 210
              ++  F        Y+ +Q                       +    ++V L      P
Sbjct: 729  IAKIANFYD------YLEIQPLGNNQFMIESPKITKVQNEEDLKEINRKIVALGERFNKP 782

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
            +V T +  F++ ED E +  ++        +    P                  +     
Sbjct: 783  VVGTCDVHFMNPED-EVYRRIIMAGKGFGDADNQPPLYLRTTDEMLEEFEYLGSA----- 836

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
                 EI       +      +      +C  +  + +  LR+           +     
Sbjct: 837  --KAREIVIENPVKIAEMVEKITPVRPDKCPPVIPDSDKMLRDICYNKAHSMYGENL--- 891

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                +   +RL+ ELN I    F+  ++I    +  + ++   VG  RGS   S  A   
Sbjct: 892  ---PEIVTERLERELNSIISNGFAVMYIIAQKLVWKSVEDGYLVG-SRGSVGSSFVATMA 947

Query: 391  TITDIDPLR---------------------------------------------FSLLFE 405
             IT+++PL                                              F + FE
Sbjct: 948  GITEVNPLSPHYYCKKCHYSDFDSEEVRKFAGGCGWDMPDRVCPVCGEKLIKDGFDIPFE 1007

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
             FL       PD D++F  D +    +Y +  +G  +  +  T G+L  K A   V    
Sbjct: 1008 TFLGFKGNKEPDIDLNFSGDYQSNAHKYTEVIFGAGQTFRAGTVGTLADKTAFGYV---- 1063

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
                                        +  + +           +  I Q   G+ R  
Sbjct: 1064 -----------------------KNYYEEHGQGKR-------KCEIDRIVQGCTGIRRST 1093

Query: 526  STHAAGIVIGD--RPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581
              H  GI++      ++   P+           VT           L+K D LG    T+
Sbjct: 1094 GQHPGGIIVLPLGEEINSFTPVQHPANDMTTDIVTTHFDYHSIDHNLLKLDILGHDDPTM 1153

Query: 582  LQKSLDF---------LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            ++   ++           +   + D + IP DD     L      LGI   +  G     
Sbjct: 1154 IKTLEEYISSPAMDNEYNETDNRFDATKIPLDDPGVISLFHDTSALGIKPDDIGGCPVGC 1213

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
             G+     + +I +V   +P  I +++  +   +G +  ++    +    K T    I  
Sbjct: 1214 LGIPEFGTDFVIQMVVDTKPNTISDLIRISGLSHGTDVWLNNAQELIRSGKATISTAICT 1273

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEEMDKQKERFISGASKNGISKTIAVNIFE 751
               +    +  G    E+  +   + K    +   K+   F    +++ +      +  +
Sbjct: 1274 RDDIMTYLINKGMDSEESFTIMERVRKGTVAKGKCKEWPEFKKDMAEHNVPDWYVWSCEQ 1333

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM------------------- 792
            +      Y F K+HAAAY +++Y+ A+ K +YP+ +  A                     
Sbjct: 1334 I-----KYMFPKAHAAAYVMMAYRIAYCKINYPLAYYGAYFGIRADAFSYEIMCQGKEKL 1388

Query: 793  --------------TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYY 837
                          + +  +  K  K  Q+      +  P  +       F + + ++  
Sbjct: 1389 QYYIDDYNRRSATLSKKEQDTMKDMKIVQEMYARGFEFEPLDIYKAQATKFLIVNGKLMP 1448

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L++I G+G   A  + EAS D  + SL+DF  R    K ++ V++++V  G        
Sbjct: 1449 PLSSIDGMGEKAAEAVAEASKDGTYLSLDDFRQRT---KASKTVIDTMVELG-------- 1497

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
               +L  L               +   ++F 
Sbjct: 1498 ---ILADLP-------------ASNQLSLFD 1512



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 12/94 (12%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA--------C 63
           V L  H+  S ++    +  +L +      PA+AITD       ++    A         
Sbjct: 381 VELHCHTKMSDMDAVTDVTTLLKQAHDWGHPAMAITDH----GVVQAFTDANHYIESLDK 436

Query: 64  AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
               + I G +  +         N+   P     
Sbjct: 437 DDPFKVIYGVEGYLVDDLTDVAVNEKGQPLDDTY 470


>gi|295100646|emb|CBK98191.1| DNA polymerase III catalytic subunit, PolC type [Faecalibacterium
            prausnitzii L2-6]
          Length = 1417

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 142/894 (15%), Positives = 289/894 (32%), Gaps = 164/894 (18%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                +++LV +  G + L ++VS  + ++   +  R+  S L +   +GLI+ +   +G 
Sbjct: 585  KYYHLIILVRSQMGLKNLYKIVSEAH-VNYFFKKPRVPRSLLNKY-RDGLILTSACEAGE 642

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLF-----GDRLYVNLQRHRGYD-----RYRESQVVQLA 204
            + RA     S    K++ ++  +      G+  Y+   R    +     +     V++L 
Sbjct: 643  LYRAIVEGHSYEELKKIASYYDVLEVQPLGNNAYM--VREGKVESEEVIKDFNRTVIKLG 700

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
                 P++AT +  F   ED     VL A         +          + N+   +   
Sbjct: 701  EDLHKPVIATGDVHFTEPEDAIYRSVLQAGNGFKDADNQPPLFYRTTEDMLNQFSYLPKE 760

Query: 265  SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
                  + N  +IA      ++                  +  E +LR+      +    
Sbjct: 761  KAYEIVVTNPRKIAASIDGNVRAIPRGTY-------PPGIEGAEQQLRDATWEHAKRDYG 813

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                      +   +RL  EL+ I    ++  ++I    + ++      VG  RGS   S
Sbjct: 814  DPL------PEIVEKRLQKELDSICGHGYAVLYVIAVKLVAYSNAGGYQVG-SRGSVGSS 866

Query: 385  VTAYALTITDIDPLR-----------------------------------------FSLL 403
              A+   I++++ L                                            + 
Sbjct: 867  AVAHFSGISEVNSLPPHYRCPKCKYSEFITDGSVDDGFDLPDKNCPHCGTRMLVDGHDIP 926

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL       PD D++F  + +  V RY +  +G   V +  T   +Q K A   V +
Sbjct: 927  FETFLGFYGDKEPDIDLNFSGEYQSNVHRYTEELFGKANVFKAGTVSGIQDKTAYGYVKK 986

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
             L                +    V+    A+++R                 +    G+ R
Sbjct: 987  YLD---------------ERGRTVNH---AEENRL----------------TLGCTGVKR 1012

Query: 524  HASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                H  G+V+      +    P+          L  T F  K++    L+K D LG   
Sbjct: 1013 TTGQHPGGMVVVPDTYEIYDFCPIQHPADDVAGGLLTTHFEFKYLHDT-LLKLDELGHDM 1071

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQ 636
             T  +       +    + +  IP +D + Y LLT+   LG+   Q++S      +  M 
Sbjct: 1072 PTFYKYF-----EEYTGIPVDSIPMNDPKVYSLLTSPEELGVTPEQIDSQTGTFGIPEMG 1126

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
             + +  +   +   RP     ++  +   +G +        +      T   +I     +
Sbjct: 1127 TNFVRGM---LVEARPKNFSELIQISGLSHGTDVWTGNADELIRSGTCTIAEVIGCRDSI 1183

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
             +  L  G     A  +  A+ K  K         +     ++ +      +  ++    
Sbjct: 1184 MLYLLRKGLEPKMAFDIMEAVRKG-KVAKGGFAPGWEEAMREHDVPDWYIESCRKI---- 1238

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK------------- 803
              Y F K+HA AY + + +  W K ++P  F A   T+  D+++                
Sbjct: 1239 -KYMFPKAHAVAYLMSAIRLMWFKLYHPQAFYAVYFTVRGDDIDYEAAVGGAAVARAHMN 1297

Query: 804  ---------------------KFCQDARQFNIQIMPPSVNTPC-VDFKVGDNRIYYSLAA 841
                                 +   +      + +P  +       + V D ++     +
Sbjct: 1298 EVKRRLKEEKNAKDEDVLVSLQLVNEMLVRGYEFLPIELGKSRGSKYVVEDGKVRLPFCS 1357

Query: 842  IKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +KG+G   A  +  A+     + S+E+      +  +   +++ L   GAL   
Sbjct: 1358 LKGLGGAAADALENATLHGQEYLSIEELQQ---ASGVGSSIIDRLRQVGALGDL 1408



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 5/74 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA---CAA--G 66
           V L +H+  S ++       I+        PAIAITD        E    A         
Sbjct: 307 VELHLHTKLSSMDAFCDPGGIVKLAHRMGHPAIAITDHGVCQGYPEAMLAADAIHKTDPD 366

Query: 67  IQPIIGCQLDIDMQ 80
            + I GC+      
Sbjct: 367 FKLIYGCEAYFVDD 380


>gi|310658999|ref|YP_003936720.1| DNA polymerase III polc [Clostridium sticklandii DSM 519]
 gi|308825777|emb|CBH21815.1| DNA polymerase III PolC [Clostridium sticklandii]
          Length = 1417

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 144/901 (15%), Positives = 296/901 (32%), Gaps = 191/901 (21%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             I ++     G + L +L+S  ++ D   ++ RI  S L +   EGL++ +   +G + +
Sbjct: 595  HITIIARDYTGLKNLYKLISASHI-DYFYKNPRIPKSLLIK-HREGLLIGSACEAGELYQ 652

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVVQL 203
            A     S      + +F        YV +      +              +     ++ +
Sbjct: 653  AVLRRKSDEEIDEIASFYD------YVEVMPTSNNNFMIRKNSVKDEIELQTINKTIIDI 706

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
            A  +    VAT++  F++ ED EA+  ++  +     + +  P                 
Sbjct: 707  AIRNNKIPVATSDVHFINPED-EAYRTVLKHSLGFKDANESTPLYFKTTQEMLDDFSYL- 764

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
              +   A E  +E   + + +++   P+         +      + ELR           
Sbjct: 765  --EPELANEIVIENTNKIADMIEDILPVPDGTYPPRIEG----SDEELRQMCFDKARNIY 818

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                       +   +RL+ EL  I    ++  ++I    +  + ++   VG  RGS   
Sbjct: 819  GDNL------PEIVEKRLERELGSIISNGYAVMYIIAQKLVTKSMQDGYLVG-SRGSVGS 871

Query: 384  SVTAYALTITDIDPLR-----------------------------------------FSL 402
            S  A    IT+++PL                                            +
Sbjct: 872  SFAATMSDITEVNPLPPHYVCSNCKYSHFITDGSYGSGADLPDKLCPDCNTNLTKDGHDI 931

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE FL  +    PD D++F  + +    +Y +  +G   V +  T G++  K A     
Sbjct: 932  PFEVFLGFEGDKEPDIDLNFAGEYQPNAHKYTEELFGKGYVFRAGTIGTIAEKTAYGFAK 991

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            + ++    + +                   A+  R +                    G+ 
Sbjct: 992  KYIEENEIEANG------------------AEVERLKS----------------GCTGIK 1017

Query: 523  RHASTHAAGI--VIGDRPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R +  H  G+  V   + +    P+     D  S +  T F+   I    ++K D LG  
Sbjct: 1018 RTSGQHPGGVMVVPDYKEIFDFSPIQYPANDSSSGVITTHFDYHSI-SGRILKLDILGHD 1076

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY---------HLLTTKGTLGIFQLESSGM 628
              ++++   D       K+ L         T           +  T G+LGI +  +  +
Sbjct: 1077 VPSIIKMLEDLTDTNATKIPLDDKDTMSLFTSTQKLGCDLSAINCTVGSLGIPEFGTKFV 1136

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            RQ L   QP    +++ +  L                N +E + +    +  ++     +
Sbjct: 1137 RQMLIDTQPTTFAELVRISGLSHG-------TDVWINNAQELVRNKVAELKDVISTRDDI 1189

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            + Y         +L G     A  +   + K      +      I    +  +      +
Sbjct: 1190 MNYL--------ILMGLKPKTAFKIMENVRKGKGLTDE-----HIQDMKEKNVPSWYIDS 1236

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------- 800
              ++      Y F K+HAAAY ++S++ A+ K H+   F A   T + ++ +        
Sbjct: 1237 CNKI-----KYMFPKAHAAAYVMMSFRIAYYKVHHKEAFYATYFTTKAEDFDIALISKGK 1291

Query: 801  -------------------------KIKKFCQDARQFNIQIMPPSVNTPCVD-FKVG-DN 833
                                      + +   +     +++    +       FK+  D 
Sbjct: 1292 DAVLEKLKELESLGNKATAKEKNIATVLEVAYEMFSRGVKLDRLDLYKSHSKVFKLSSDK 1351

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +   L +++G+G T A +I    + + F S+EDF  R    K  + V+E+L+  G L+ 
Sbjct: 1352 ALIPPLISMQGLGETVAINI-ANESSREFMSIEDFRQRT---KATKTVIETLISYGCLNS 1407

Query: 894  F 894
             
Sbjct: 1408 L 1408



 Score = 79.1 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 34/86 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++    +  ++ K       AIAITD   + +  E  +     G++ + 
Sbjct: 321 VELHAHTNMSAMDAIPGVKALIKKAKEFGHKAIAITDHGVVQAFPEAMEVGQNEGVKILY 380

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +    +  +T   +  F    
Sbjct: 381 GVEGYLVNDMSKIVTIDTEGDFEDEY 406


>gi|257466340|ref|ZP_05630651.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
            25563]
 gi|315917497|ref|ZP_07913737.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
            25563]
 gi|313691372|gb|EFS28207.1| DNA polymerase III alpha subunit [Fusobacterium gonidiaformans ATCC
            25563]
          Length = 1450

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 150/885 (16%), Positives = 297/885 (33%), Gaps = 179/885 (20%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM---LTGGS--SG 153
            ++LLV    G + L  LVS  +L   G +  R+  S L++   EGLI+   LTG S    
Sbjct: 614  VMLLVKDRVGLENLNRLVSDAHLYHFGNRKPRVLKSNLEKY-REGLIVGCSLTGHSINDS 672

Query: 154  PIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYVN--------LQRHRGYDRYRESQVVQL 203
             +   +   + +   +++  +   +L   + Y          L     Y          L
Sbjct: 673  DLFHDYSTGNMERIPEKISFYDYIELLPRQAYTENIEYNGTGLISGNSYIEKMNQYFYDL 732

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
            A    + +  ++N  +L  E+ +   +L+  +     ++  +                  
Sbjct: 733  AKEKGILVTGSSNVHYLDPEEAKIRTILLYGSGMVHGAKAYKTDNGFYFRTTGELLEEFS 792

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            +     A E  ++     +  ++V  PI   F     D      E  +R           
Sbjct: 793  YLGEEAAKEILIQNTNAIAEKIEVIKPIPDGFYPPSID----NAEETVREMTYEKAYRIY 848

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                       +   +RL+ ELN I    FS  +L     ++ +  N   VG  RGS   
Sbjct: 849  GNPL------PEIVEKRLERELNAIIGNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGS 901

Query: 384  SVTAYALTITDIDPLR-----------------------------------------FSL 402
            S+ A+ + IT+++ L                                          +S+
Sbjct: 902  SLVAFMMGITEVNALYPHYICTNPDCKHVEFIEREGVGIDLPEKKCPKCGQMYKRDGYSI 961

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE F+  +   +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V 
Sbjct: 962  PFEVFMGFNGDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAAGYVK 1021

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            +                  D    +S                      ++ +++K EG  
Sbjct: 1022 K---------------YFEDNGMSISQAE-------------------VMRLAKKCEGAK 1047

Query: 523  RHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLK 577
            +    H  G+V    D  + +  P+ +       D   T ++   +++  L+K D LG  
Sbjct: 1048 KTTGQHPGGMVVVPSDHTIFEFCPVQKPANDENSDSITTHYDYHVMDE-QLVKLDILGHD 1106

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQL 623
              T ++     L Q    +D+  IP  D +T  + ++                T GI + 
Sbjct: 1107 DPTTIK-----LLQEYTGLDIYGIPLSDPDTLKIFSSTESLGVTPQQIGSEVATFGIPEF 1161

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +RQ L   +P    +++ +  L                N +E I      +  ++ 
Sbjct: 1162 GTPFVRQMLLDTRPTTFAELVRISGLSHG-------TDVWLNNAQEFIRQKQATLSEVIT 1214

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
                ++ Y            G     A  +   + K    +  +  +++     +  +  
Sbjct: 1215 VRDDIMNYLID--------QGIEKGTAFKIMEFVRKGKPSKDPEGWKKYSDLMKEKHVKD 1266

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--- 800
                +   +      Y F K HA AY +++ + A+ K HYP+ F AA ++ + ++     
Sbjct: 1267 WYIESCRRI-----KYMFPKGHAVAYVMMAIRIAYFKVHYPLAFYAAYLSRKAEDFNFET 1321

Query: 801  ----------------------------KIKKFCQDARQFNIQIMPPSVNTPCVD-FKVG 831
                                         + +   +    +I+++P  +       F + 
Sbjct: 1322 LGTPEKARIRLEELSKEGKLDVKKKAEQALCEVMIEMEARHIELLPIDLYHSAGKKFLIQ 1381

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
             ++I   L A+ G+G     +I+E    + F S+EDF  R    +
Sbjct: 1382 GDKIRVPLIALAGLGGAVIDNILEERQKESFISIEDFKKRTKVSQ 1426



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 38/91 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S + G   + +I+ +       A+AITD   + S     + A  AGI+ I+
Sbjct: 337 VELHTHTKMSEMVGVTEVGDIIKRAKQYGHSAVAITDYGVVHSFPGAHKAAKEAGIKAIL 396

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           GC+  +       + N  +       S V+ 
Sbjct: 397 GCEAYMIDDTLPIVHNLKEDQDLEKASFVVY 427


>gi|116495060|ref|YP_806794.1| DNA polymerase III PolC [Lactobacillus casei ATCC 334]
 gi|122263523|sp|Q038M0|DPO3_LACC3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116105210|gb|ABJ70352.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus casei
            ATCC 334]
          Length = 1444

 Score =  199 bits (505), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 152/903 (16%), Positives = 293/903 (32%), Gaps = 176/903 (19%)

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
             Q N ++              ++   T  G + L +LVS   +     +  R+  S LQ+
Sbjct: 594  NQLNDRVGAGDAYKAARPSHAIVFAKTQAGLKNLFKLVSLSNVK-YFYRVPRVPRSQLQK 652

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRES 198
            +  EGL++ +  S+G +  A        A  +   +        Y+ +Q    Y    E+
Sbjct: 653  L-REGLLVGSACSNGEVFTAMMQKGEAEARAKASFYD-------YLEVQPLPVYQPLIEA 704

Query: 199  QVVQ--------------LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             +++              +    E P+VAT ++ +L + D     +L+        +  +
Sbjct: 705  GLIKGEAHLKDIIQKIIKIGSELEKPVVATGDAHYLDQHDAIYRQILIHSQGG--ANPLN 762

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTV--EIARRCSFILQVHAPILPRFIEKECDD 302
            R  +   H+      +        E     V        +++     P+  +    E   
Sbjct: 763  RHSLPDVHFRSTSEMLTDFSWLGEEKAHELVVDNSNLIANWVDDDITPVKDKLYTPEVPG 822

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            +    E  L++  +                      QRLD EL  I    FS  + I   
Sbjct: 823  V----EENLKHDVMTTAHELYGDPL------PDIVAQRLDKELKSIIGNGFSVIYNIAQR 872

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------- 399
             +  + K+   VG  RGS   S+ A    IT+++PL                        
Sbjct: 873  LVLKSNKDGYLVG-SRGSVGSSLAATMAGITEVNPLPPHYRCPNCQYSEFFTHGEIGSGF 931

Query: 400  ------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
                                + FE FL      +PD D++F  D +     Y++  +G +
Sbjct: 932  DLPDKQCPKCGADLHKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQPIAHNYIKVMFGED 991

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
               +  T G++  K A   V +A +    Q  R  +                        
Sbjct: 992  HSFRAGTIGTVADKTAYGYV-KAYERDTGQQLRGAE------------------------ 1026

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRSD---LPVT 556
                     +  ++Q   G+ R    H AGI+I   D  +    P+             T
Sbjct: 1027 ---------IDRLAQGDTGVKRTTGQHPAGILIVPADMDIYDFTPIQYPADDQNAAWMTT 1077

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             F+   I    ++K D LG    T+++     + Q    V+   IP DD     L +   
Sbjct: 1078 HFDFHSIHD-NILKMDVLGHDDPTMIR-----MLQDLSGVEPKSIPTDDPGVMALFSGTK 1131

Query: 617  TLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
            +LG+   Q+ S      +       +  ++      +P     ++  +   +G +  +  
Sbjct: 1132 SLGVTPEQINSKMGTLGIPEFGTRFVRGMLEET---KPTTFSELLQISGLSHGTDVWLGN 1188

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
               +      T   +I     + +  +  G   S A  +   + K      D     +  
Sbjct: 1189 AEELIKQGIVTLKEVIGCRDNIMMDLIHWGMEDSMAFNIMEHVRKGRGIPDD-----WQK 1243

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               +N       +     +     Y F K+HA AY +++ + AW K HYP+ +  A  ++
Sbjct: 1244 AMRENENVPDWYIESCLKI----KYMFPKAHATAYILMALRIAWFKVHYPLIYYTAYFSV 1299

Query: 795  EMDNVE---------------------------------KIKKFCQDARQFNIQIMPPSV 821
              ++ +                                  + +   +  +   +I    V
Sbjct: 1300 RAEDFDLAAMSHGKEAVKAAMKEITDKGMDASTKEKQLLTVLEIANECLERGFKIKMIDV 1359

Query: 822  NTP-CVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
                  +F +  D+ I     A+ G+G   A+ I+ A  +KPF S ED  +R    K+++
Sbjct: 1360 TKSDSHNFLIQDDHTILAPFRAVPGLGDNVAKQIVAAREEKPFLSKEDLANR---GKVSK 1416

Query: 880  RVL 882
             ++
Sbjct: 1417 TLI 1419



 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 37/91 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S ++    +++ + +       AIA+TD   L +  E    A  AG++ + 
Sbjct: 334 VELHLHTNMSQMDAMNPISDYVKRAKEWGHKAIAVTDHAGLQAYPEAHSAAVKAGLKMLY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           G ++++            +         V+ 
Sbjct: 394 GVEINLVDDGTPVAYRADEPRDLASAEYVVF 424


>gi|323351878|ref|ZP_08087529.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
           sanguinis VMC66]
 gi|322121935|gb|EFX93667.1| DNA-directed DNA polymerase III alpha subunit [Streptococcus
           sanguinis VMC66]
          Length = 485

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 124/507 (24%), Positives = 214/507 (42%), Gaps = 71/507 (14%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L   + YS ++  + +   + K        + + D +NL+ A  F ++A +AG+QP++
Sbjct: 36  IQLDTKTVYSFMDSLIPIKKYVQKAKELGYSHLGMMDVDNLYGAYHFLEEAESAGLQPLL 95

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +L +                     + LL   ++GY+ L++ VS + ++ Q       
Sbjct: 96  GLELSL-------------IKAEQELHLRLLALDSQGYRNLMK-VSTLKMMGQKN----- 136

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                Q +  +GL ++     G  D                      G   YV +     
Sbjct: 137 -WEDFQHLF-KGLAVIVPAFDGVADLDL-------------------GLDFYVGVFPATP 175

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPD 251
                             P +  +   +    D E   +L A+  +  +  ++   +   
Sbjct: 176 K------------QEFGRPTLPLHTVRYFDTGDLETLQMLRAIRENASL--REIGSLPNH 221

Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
            +L     +   F +        +E   R           LPR       + ++    EL
Sbjct: 222 EFLLGPDALAGAFKETFPESLANLEKLVRHVHYDINRELKLPR------FNRERPAVEEL 275

Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNN 371
           R ++ AGL+         +G   + Y++RLD EL+VI +M F  YFLIV D +++ +   
Sbjct: 276 RERSEAGLKK--------RGLTGKLYQERLDQELDVIHQMGFDDYFLIVWDLLRFGRSQG 327

Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
             +G GRGS  GS+ AYAL IT IDP++ +LLFERFLN +R +MPD DID     R E I
Sbjct: 328 YYMGMGRGSAVGSLVAYALEITGIDPVKNNLLFERFLNLERYTMPDIDIDIPDVYRPEFI 387

Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
           RYV+++YG    AQI+T+ +  AK A+RDV +   +P  ++  + K I    +      A
Sbjct: 388 RYVRDRYGSMHAAQIVTYSTFGAKQAIRDVFKRFGLPEYELTNITKKIRFGDSLT---SA 444

Query: 492 IADDSRFREARLADPSVDRLLEISQKL 518
              +  FR+   +     +  +I++K 
Sbjct: 445 YEKNMAFRQIINSKLEYQKAFDIAKKS 471


>gi|227890229|ref|ZP_04008034.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
 gi|227849231|gb|EEJ59317.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
          Length = 1432

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 145/898 (16%), Positives = 289/898 (32%), Gaps = 198/898 (22%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                + +L    EG + + +LVS         +  R   S L++   +GL+  +G   G 
Sbjct: 604  KPSHMSVLALNQEGLKNMYKLVSLASTK-YFYRIPRTPKSELRKYH-KGLLFGSGCWQGD 661

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ----------RHRGYDRYRESQVVQ-- 202
            +  +        A ++   +        Y+ +Q               D     +++Q  
Sbjct: 662  VFISMMQKGYDEAREKARFYD-------YLEVQPPAAYQTLIEDDLIKDEDELHEIIQNI 714

Query: 203  --LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
              L      P+VAT++S ++   +     +L+A         K+ P +      +     
Sbjct: 715  YKLGKELNKPVVATSDSHYVEPHEAIYRKILLAAQKGNPNRNKNLPDLHFYSTQEMLDAF 774

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
              +  D+  A E  ++   + +  ++  API         +      + E+++       
Sbjct: 775  SFLGEDV--AKEIVIDNTNKLADQIEEIAPIKSGLYPPHIE----NADQEMKDLTYNKAY 828

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                +         +    R++ ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 829  ELYGKPL------PKIVEDRIELELNSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGS 881

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 882  VGSSLVATMSGITEVNPLAPHYRCPNCKYSKFFENGEYGSGYDLPDKECPKCGTPLVKDG 941

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + F  FL      +PD D++F  D +     Y++  +G +   +  T  ++  K A  
Sbjct: 942  QDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNYIRVMFGPDNSFRAGTIATVADKTAYG 1001

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V                            +   D++              L  ++    
Sbjct: 1002 YV----------------------------KHYEDENELHLRNAE------LDRLAVGAS 1027

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGIV+      +    P+             T F+   I    ++KFD L
Sbjct: 1028 GVKRTTGQHPAGIVVVPDDMDIYDFTPVQYPADDLSAAWLTTHFDFHSIHD-NILKFDIL 1086

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGI 620
            G    T+++     + Q    VD   IP DD     L ++                TLG+
Sbjct: 1087 GHDDPTMIR-----MLQDLSGVDPLTIPPDDPGVMSLFSSPEILGVTPEQIQSKTGTLGV 1141

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +R  LE  +P    +++ +  L                N ++ I +    +  
Sbjct: 1142 PEFGTKFVRGMLEETKPTTFSELLQISGLSHG-------TDVWLGNAEDLINNGTCKLKN 1194

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            ++     ++        +  +  G     A     ++        +  +    +    + 
Sbjct: 1195 VIGCRDNIM--------MDLIHWGVKPEVAFFTMESVRHGRGISDENMEILKKNDKIPDW 1246

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
               +              Y F K+HA AY +++ + AW K +YPV + A+  ++  D  +
Sbjct: 1247 YIPSCLKI---------KYMFPKAHATAYILMALRIAWFKVYYPVIYYASYFSVRADLFD 1297

Query: 801  KIKK---------------------------------FCQDARQFNIQIMPPSVNTPCV- 826
             +                                      +  +  I+I    VN     
Sbjct: 1298 LVAMSHGKNTVKAAMKEIQDKGMDVSAKDKSLLTVLEIANECLERGIKIKMVDVNESEAT 1357

Query: 827  DFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            DFK+  D+ I     A+ G+G   A+ I+ A A++ F S ED  +R    K+++ ++E
Sbjct: 1358 DFKIIDDHTILAPFNAVPGLGDNAAKQIVTARAEQKFLSKEDLATR---GKVSQTIME 1412



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   + ++ +       Q AIAITD  ++ S  E      +  ++ + 
Sbjct: 329 VELHLHTNMSQLDATSTASDFIKTAKKFGQKAIAITDHADVQSFPEAYHTGASEKMKILY 388

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N  +  +     ++ 
Sbjct: 389 GYEANMIDDHALLVLNPTEMDYRDREYVIF 418


>gi|227892603|ref|ZP_04010408.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
 gi|227865588|gb|EEJ73009.1| DNA polymerase III alpha chain [Lactobacillus ultunensis DSM 16047]
          Length = 1435

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 137/886 (15%), Positives = 277/886 (31%), Gaps = 195/886 (22%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                + +L    +G + L +LVS     D   +  R   S L  +  EGL+  +G   G 
Sbjct: 607  RPSHMTVLAKDQKGLKNLYKLVSIASTKD-FYRIPRTPKSDLARLH-EGLLYGSGCWQGD 664

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQ------------ 202
            +  A        A ++   +        ++ +Q  + Y +  E  +++            
Sbjct: 665  VFVAMMQKGYDEAREKAKFYD-------FLEVQPPKNYSQLIEDGLIKDEEQLEEIISNI 717

Query: 203  --LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
              L    + P+VAT ++ ++   D     +L++   S     K +P +      +  +  
Sbjct: 718  YKLGKELKKPVVATGDAHYVEPHDAIYRTILISAQRSNPNRNKPQPDLHFYSTQEMLNAF 777

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
              +  D+  A E  ++ + + +  +    PI                + EL+        
Sbjct: 778  SFLGEDV--AKEIVIDNSNKIADEISEIQPIKDGLYPPHIAH----ADEELKKLTYDKAY 831

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                          +  + R+D ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 832  ELYGNPL------PKIVKDRIDLELNSIISNVYAVIYLISQRLVAKSNKDGYLVG-SRGS 884

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 885  VGSSLVATMSGITEVNPLAPHYRCPKCKYSQFFENGEYGSGFDLPDKNCPKCGTPLVKDG 944

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + F  FL      +PD D++F  D +     +++  +G +   +  T  ++  K A  
Sbjct: 945  QDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPDNSYRAGTIATVADKTAYG 1004

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                                          +   ++   +           L  ++  + 
Sbjct: 1005 YA----------------------------KHFDEERDLKLRNAE------LDRLASGIR 1030

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGIV+      +    P+            +T ++   I    ++KFD L
Sbjct: 1031 GVKRTTGQHPAGIVVVPDDMDIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDIL 1089

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGI 620
            G    T+++       Q    +D   IP DD     L ++                TLG+
Sbjct: 1090 GHDDPTMIRH-----LQDLSGIDPLTIPPDDPGVMSLFSSTKALGVTPEQIGSQTGTLGV 1144

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +R  LE  +P    +++ +  L                N ++ +      +  
Sbjct: 1145 PEFGTRFVRGMLEETKPTTFSELLQISGLSHG-------TDVWLGNAEDLVNQGTCKLKD 1197

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            ++     ++        +  +  G     A     ++        +       +    + 
Sbjct: 1198 VIGCRDNIM--------MDLIHWGVKPEIAFSTMESVRHGRGISDENMAVLKKNKNIPDW 1249

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
               +              Y F K+HA AY +++ + AW K +YP  +  A  ++  D  +
Sbjct: 1250 YIPSCLKI---------KYMFPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLFD 1300

Query: 801  KIKK---------------------------------FCQDARQFNIQIMPPSVNTPCV- 826
             +                                      +  +  I+I    ++     
Sbjct: 1301 LVAMSHGKNTVKAAMKEIQDKGMDASAKDKSLLTVLEIANECLERGIKIKMVDIDKSEAT 1360

Query: 827  DFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            DFK+   + I     A+ G+G   A+ I+ A A+K F S ED   R
Sbjct: 1361 DFKILDKHTILAPFNAVPGLGDNAAKQIVAARAEKKFLSKEDLSKR 1406



 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   + ++ +       Q AIAITD  ++ S  E      A G++ + 
Sbjct: 332 VELHLHTNMSQLDATNAPSDFIKTAKKFGQKAIAITDHGDVQSFPEAYSTGKATGMKILY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 392 GLEANMIDDHALLVLNPAPMTYEDREFVIF 421


>gi|310641590|ref|YP_003946348.1| DNA polymerase iii, alpha subunit [Paenibacillus polymyxa SC2]
 gi|309246540|gb|ADO56107.1| DNA polymerase III, alpha subunit [Paenibacillus polymyxa SC2]
          Length = 1438

 Score =  198 bits (504), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 152/906 (16%), Positives = 290/906 (32%), Gaps = 154/906 (16%)

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            + M D L                 +      G + L +LVS  +  +  K+   I  S L
Sbjct: 590  LKMLDRLNDYVGKDLSTVRPFHCCIYALNPVGKKNLYKLVSMSHT-EYFKRVPCIPKSKL 648

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY---VNLQRHRG 191
             E+  +GL++++G   G    A    S + AE+    +   ++    +Y   V  Q   G
Sbjct: 649  SEM-RDGLLIISGCEKGEFFEAVLNKSEEEAEEIAQFYDVLEIQPLTMYMHLVEKQLVSG 707

Query: 192  YDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             D  +    +V  +    + P++AT N  +L   D    D+ +         +  R +  
Sbjct: 708  PDALKTAIRKVCDIGKRLDKPVIATGNVHYLETRDKLYRDITIHGITGFSPLKDIR-KPD 766

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                  +       F    +A E  V+     +   +       +      D      + 
Sbjct: 767  AHLRTTDEMLAEFEFLGEEKAYEVVVKNTSELAERFEELELFPDKLFTPLLDG----ADE 822

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            E+RN           +         +    RL+ EL  I +  FS  +LI    ++ + +
Sbjct: 823  EIRNTCYETARSIYGE------SLPEVVVARLEKELEPIIKYGFSANYLISERLVKKSNQ 876

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFS---------------------------- 401
            +   VG  RGS   SV A  L I++++PL                               
Sbjct: 877  DGYLVG-SRGSVGSSVVATFLGISEVNPLPAHYICGNSECRHSEWFLDGSVPSGFDLPDK 935

Query: 402  ---------------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  + +     Y +  +G + V + 
Sbjct: 936  NCPNCGGKLKGEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPVAHNYTKVLFGEKSVFRA 995

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A     +  +                                  A     
Sbjct: 996  GTIGTVAEKTAFGFAKKYEE----------------------------------AHHKKW 1021

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMYRDVRSDLPVTQFNMKWIE 564
                L  ++    G+ R    H  GIV+    +    + P+      D   +++     +
Sbjct: 1022 RGAELNRLASGCTGVKRSTGQHPGGIVVVPDYIEVEDITPVQYPA--DDTSSEWKTTHFD 1079

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--Q 622
                   + L L  L     ++  + Q    VD + IP +D +   +  +   LG+   Q
Sbjct: 1080 YHAFD-ANLLKLDILGHDDPTMMRMLQDLTGVDPTTIPMNDPKVMSMFNSTEALGVTPQQ 1138

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
            + +      +  M    +  +  LV        D + +          + +   LI    
Sbjct: 1139 IRTPVATYGVPEMGTKFVRQM--LVESQPSSFADLLQISGLSHGTGVWLGNAQELIKNNT 1196

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
               + VI  ++ +M      +G     A  +  ++ K      +     +I    K  + 
Sbjct: 1197 CNIKTVIGCRDDIMLFLIYKAGMDAGLAFKITESVRKGKGLSAE-----WIEEMKKCKVP 1251

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL-------- 794
            +    +  ++      Y F K+HAAAY + + +TA+ K ++P+E+ A   ++        
Sbjct: 1252 QWYIDSCLKI-----QYMFPKAHAAAYVISAVRTAYFKLYHPIEYYATYFSVRAADFDID 1306

Query: 795  -EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV-------------------------DF 828
                  + I +   +  Q   Q  P       +                          F
Sbjct: 1307 LCCQGYDAIARKIVEIEQLGFQAPPKEKGMLPILEMALEMTARGFSFKSIDLYRSEATRF 1366

Query: 829  KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            KV  + +     A++G+G   AR+I  A     F S+EDF  +    K ++ ++E L   
Sbjct: 1367 KVDGDSLIPPFGALQGIGDNAARNIAAAREQGEFLSVEDFQQK---SKASKTIVEMLSQM 1423

Query: 889  GALDCF 894
            G     
Sbjct: 1424 GCFRGL 1429



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 31/69 (44%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H+  S ++   S++  +   A     AIA+TD   +    + ++ A   GI+ I 
Sbjct: 335 VEFHLHTKMSAMDAVASIDQYVKTAAKWGHKAIAVTDHGGVQCYPDAAKAAKKNGIKMIY 394

Query: 72  GCQLDIDMQ 80
           G + ++   
Sbjct: 395 GVEANVVND 403


>gi|257452473|ref|ZP_05617772.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
 gi|317059014|ref|ZP_07923499.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
 gi|313684690|gb|EFS21525.1| DNA polymerase III alpha subunit [Fusobacterium sp. 3_1_5R]
          Length = 1450

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 150/885 (16%), Positives = 297/885 (33%), Gaps = 179/885 (20%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM---LTGGS--SG 153
            ++LLV    G + L  LVS  +L   G +  R+  S L++   EGLI+   LTG S    
Sbjct: 614  VMLLVKDRVGLENLNRLVSDAHLYHFGNRKPRVLKSNLEKY-REGLIVGCSLTGHSINDS 672

Query: 154  PIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYVN--------LQRHRGYDRYRESQVVQL 203
             +   +   + +   K++  +   +L   + Y          L     Y          L
Sbjct: 673  DLFHDYSTGNVERIPKKISFYDYIELLPRQAYTENIEYNGTGLISGNSYIEKMNQYFYDL 732

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
            A    + +  ++N  +L  E+ +   +L+  +     ++  +                  
Sbjct: 733  AKEKGILVTGSSNVHYLDPEEAKIRTILLYGSGMVHGAKAYKTDNGFYFRTTGELLEEFS 792

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            +     A E  ++     +  ++V  PI   F     D      E  +R           
Sbjct: 793  YLGEEAAKEILIQNTNAIAEKIEVIKPIPDGFYPPSID----NAEETVREMTYEKAYRIY 848

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                       +   +RL+ ELN I    FS  +L     ++ +  N   VG  RGS   
Sbjct: 849  GNPL------PEIVEKRLERELNAIIGNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGS 901

Query: 384  SVTAYALTITDIDPLR-----------------------------------------FSL 402
            S+ A+ + IT+++ L                                          +S+
Sbjct: 902  SLVAFMMGITEVNALYPHYICTNPDCKHVEFIEREGVGIDLPEKKCPKCGQMYKRDGYSI 961

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE F+  +   +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V 
Sbjct: 962  PFEVFMGFNGDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAAGYVK 1021

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            +                  D    +S                      ++ +++K EG  
Sbjct: 1022 K---------------YFEDNGMSISQAE-------------------VMRLAKKCEGAK 1047

Query: 523  RHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLK 577
            +    H  G+V    D  + +  P+ +       D   T ++   +++  L+K D LG  
Sbjct: 1048 KTTGQHPGGMVVVPSDHTIFEFCPVQKPANDENSDSITTHYDYHVMDE-QLVKLDILGHD 1106

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQL 623
              T ++     L Q    +D+  IP  D +T  + ++                T GI + 
Sbjct: 1107 DPTTIK-----LLQEYTGLDIYEIPLSDPDTLKIFSSTESLGVTPQQIGSEVATFGIPEF 1161

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +RQ L   +P    +++ +  L                N ++ I      +  ++ 
Sbjct: 1162 GTPFVRQMLLDTRPTTFAELVRISGLSHG-------TDVWLNNAQDFIRQKQATLSEVIT 1214

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
                ++ Y            G     A  +   + K    +  +  +++     +  +  
Sbjct: 1215 VRDDIMNYLID--------QGIEKGTAFKIMEFVRKGKPSKDPEGWKKYSDLMKEKHVKD 1266

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--- 800
                +   +      Y F K HA AY +++ + A+ K HYP+ F AA ++ + ++     
Sbjct: 1267 WYIESCRRI-----KYMFPKGHAVAYVMMAIRIAYFKVHYPLAFYAAYLSRKAEDFNFET 1321

Query: 801  ----------------------------KIKKFCQDARQFNIQIMPPSVNTPCVD-FKVG 831
                                         + +   +    +I+++P  +       F + 
Sbjct: 1322 LGTPEKARIRLEELSKEGKLDVKKKAEQALCEVMIEMEARHIELLPIDLYHSSGKKFLIQ 1381

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
             ++I   L A+ G+G     +I+E    + F S+EDF  R    +
Sbjct: 1382 GDKIRVPLIALAGLGGAVIDNILEERQKESFISIEDFKKRTKVSQ 1426



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 38/91 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S + G   + +I+ +       A+AITD   + S     + A  AGI+ I+
Sbjct: 337 VELHTHTKMSEMVGVTEVGDIIKRAKQYGHSAVAITDYGVVHSFPGAHKAAKEAGIKAIL 396

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           GC+  +       + N  +       S V+ 
Sbjct: 397 GCEAYMIDDTLPIVHNLKEDQDLEKASFVVY 427


>gi|125625168|ref|YP_001033651.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493976|emb|CAL98973.1| DNA polymerase III alpha subunit [Lactococcus lactis subsp. cremoris
            MG1363]
 gi|300071977|gb|ADJ61377.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 1635

 Score =  198 bits (503), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 139/908 (15%), Positives = 281/908 (30%), Gaps = 182/908 (20%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + L   T EG + L ++VS   +        R+  S L E  +EGL++ +    G +  
Sbjct: 786  HVTLYAKTQEGLKNLFKIVSFGNVK-YYAGLPRLPRSVL-EANSEGLLVGSACEVGEVFD 843

Query: 158  AFFFNSSQVAEKRLLTF--KKLFGDRLYVNLQRHRG-----YDRYRESQVVQLAYTHELP 210
            A    + +   +    +   ++F   LY +L                  ++++  T   P
Sbjct: 844  AAINKTFEETLEIAKFYDFIEVFPPALYRSLVVGGSFKSEKELEQTLKDLIKIGKTLGKP 903

Query: 211  LVATNNSLFLSEEDYEAHDVLMAV---------AHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            ++AT N  +L+ ED    ++++                   K  P         +     
Sbjct: 904  VLATGNLHYLNPEDAIYREIIVRSLGLGAEINWTQGHGEHAKPLPLPEAHFRTTDEMLEA 963

Query: 262  SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK-ECDDIQKEEENELRNKAVAGLE 320
              F D   A E  ++  ++ +    V  P+           D  +  E  +         
Sbjct: 964  FSFLDEKTAREIVIDNTQKMADEFDVLTPVRDDLYTPKMVFDGGETSEERIVRLTYEKAH 1023

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                               RL+ EL  I    FS  ++I  + ++ + +    VG  RGS
Sbjct: 1024 EWYGNPL------PDIIDARLEKELRSILGNGFSVVYIISQELVKRSNERGYIVG-SRGS 1076

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A  + IT+++PL                                          
Sbjct: 1077 VGSSLVATMIGITEVNPLAPHYRCPECQYFECYDDGSFGSGYDMPDKNCPKCDHKLIKDG 1136

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + FE FL      +PD D++F  D +      V++ +G +   +  T G++  K A  
Sbjct: 1137 HDIPFETFLGFKGDKVPDIDLNFSGDDQPLAHLDVRDIFGEDYAFRAGTIGTVAEKTAFG 1196

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V +  +  Y Q     +                                 +  ++    
Sbjct: 1197 FV-KGYERDYDQFYGNAE---------------------------------IDRLAAGST 1222

Query: 520  GLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H  GI+       +    P+         +   T F+   I    ++K D L
Sbjct: 1223 GVKRTTGQHPGGIIVIPNYMDVYDFSPVQFPADDVNAEWQTTHFDFHAIHD-NILKLDIL 1281

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGI 620
            G    T+++K      Q    +    IP DD     L T                 TLGI
Sbjct: 1282 GHDDPTMIRK-----LQSLSGIVPQDIPMDDPGVMKLFTGTESLGLTEEQLGVKLGTLGI 1336

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             ++ +      +   +P    D++ +  L                N ++ I S    +  
Sbjct: 1337 PEMGTFTSMNMIAEAKPKNFADLLQISGLSHG-------TDVWSGNAQDLIRSGIADLSS 1389

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            ++     +++Y         +  G     A  +   + K +  ++  ++      A +  
Sbjct: 1390 VIGCRDDIMVYL--------IHKGLENGLAFTIMERVRKGMWNKIPAEEREKYVEAMREH 1441

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
                  +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A  ++     +
Sbjct: 1442 EVPEWYIESCSKI----KYMFPKAHAAAYIMMALRVAYFKVHHPIFYYCAWFSIRATAFD 1497

Query: 801  KIKK---------------------------------FCQDARQFNIQIMPPSVNTPCV- 826
                                                  C +  +         +      
Sbjct: 1498 IGVMGAGLEAVKAKMKEIKDKGFEATNVETNLYTTLELCNEMLERGFTFGKIDLYRSEAT 1557

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            +F +  + +      + G+G   A+ I+ A A+  F S  +   R     +++ ++E++ 
Sbjct: 1558 EFVIDGDTLIPPFVTMDGLGENVAKQIVAARAEGEFLSKMELRKR---GGVSQTIIENMT 1614

Query: 887  FAGALDCF 894
              G L+  
Sbjct: 1615 NMGVLEGM 1622



 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   S ++++ + A     AIAITD   L S  E        G++ I 
Sbjct: 507 VEFHAHTNMSQMDAIPSASSLVAQAAKWGHKAIAITDHGGLQSFPEAHSAGKKNGVKIIY 566

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       + N+          +V 
Sbjct: 567 GVEANLVEDKIPIVFNETDVDMYESTYVVF 596


>gi|293374694|ref|ZP_06621002.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
            sanguinis PC909]
 gi|292646608|gb|EFF64610.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
            sanguinis PC909]
          Length = 1528

 Score =  197 bits (501), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 148/995 (14%), Positives = 301/995 (30%), Gaps = 220/995 (22%)

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+   +    + N  +  +          + +L     G++ L ++VS+    D      
Sbjct: 617  ILKLDIKTHDEVNQLVDKETSFKLDRTTHVTILAQNQVGFKNLFKVVSQSMTCD-LYGQP 675

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI  S+L +   EGL++ +   +G +  +      +  +++   +        Y+ +Q  
Sbjct: 676  RIRRSYL-QAHREGLLIGSSCVNGEVWESALNKPYEDLQEKAKFYD-------YLEVQPP 727

Query: 190  RGYDRYRESQVVQLAY--------------THELPLVATNNSLFLSEEDYEAHDVLMAVA 235
              Y    +    ++A                  +P+ AT +   L+ ED     +     
Sbjct: 728  EVYSHLIDQNSKEMAQSIIETIKTIIKVGEELNIPVCATGDVHHLNREDKLYRQIY---- 783

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
              T +    R  +      +  S       ++        E  ++   +   +A      
Sbjct: 784  TRTPMIGGGRHPLNHPDIKEIPSMHFRTTDEMYHDFSFLDEAKQKEIIVTNPNAIADSCE 843

Query: 296  IEKECDDIQKEE-ENELRNK----AVAGLEVRLAQGAIAK--GYHAQDYRQRLDFELNVI 348
            + K   D      ++ L++K        L     + A         Q    RL  ELN I
Sbjct: 844  MIKAIKDELFTPADDFLKDKGIPSIKDRLTEMCYERAHEWYGEELPQYVLDRLIKELNSI 903

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------- 398
                F+  + I    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 904  IGNGFAVIYYISHMLVKKSLDDGYLVG-SRGSVGSSFVATLTDITEVNPLSPHYRCPNCL 962

Query: 399  --------------------------------------RFSLLFERFLNPDRMSMP---- 416
                                                           +  D   +P    
Sbjct: 963  FAAFKMNEEEKQRYGIRPEEEAFQDILANAESGFDLPDATCPHCGTKMRKDGHDIPFETF 1022

Query: 417  ---------DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
                     D D++F  + +     Y +  +G +   +  T G++  K A   V      
Sbjct: 1023 LGFKGDKVPDIDLNFSGEYQPVAHLYCREVFGDDFAFRAGTIGTVAEKTAFGYV------ 1076

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
                                    + D +R             +  +++  EG+ R +  
Sbjct: 1077 ---------------------KGFLEDTNREMRTAE-------IERMAKGCEGVRRTSGQ 1108

Query: 528  HAAGI--VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            H  GI  V     +  + P+      D P  ++     +   +   + L L  L     +
Sbjct: 1109 HPGGIIVVPNYMDIYDVTPIQYPA--DDPTAEWRTTHFDFHSIH-DNLLKLDILGHDDPT 1165

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQLESSGMRQA 631
            +    Q    +D   IP DD E Y L  +                + G+ +  +  +R  
Sbjct: 1166 VIRYLQDISGIDPKDIPTDDPEVYKLFYSTESLGVTPEQIRSTTGSYGVPEFGTPFVRNM 1225

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            LE  +P    +++ +  L          V+ N                      + VI  
Sbjct: 1226 LEDTKPKTFAELVKISGLSH-----GTDVWLNNAADLVSGKYDKFGKVEF----KNVIGC 1276

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            ++ +  +  +  G   + A  +   + K +  +     + F     K+ I +    +  +
Sbjct: 1277 RDDI-MVYLMYGGLEPALAFKIMEFVRKGLASKNPDGWKEFEEEMRKHKIPEWYIWSCGQ 1335

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKI 802
            +      Y F K+HA AY +++ + AW K H+P+ +  A  +   D           + I
Sbjct: 1336 I-----KYMFPKAHATAYVLMAIRIAWFKVHHPIYYYCAYFSKRADVFEMETMIKGPDAI 1390

Query: 803  KKFCQDARQFNIQIMPPSVNTP-------------------------CVDFKV--GDNRI 835
            +K   +  +      P   N                            VDFK+      +
Sbjct: 1391 RKRLDEIEEKGFDATPKEKNLVTILEIALEMTERGFYFQNFNIEESNAVDFKISEDGKSL 1450

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                 A+ G+G   AR I+ A  + PF ++++   R    K+++ ++E L          
Sbjct: 1451 IPPFTALDGLGENVARQIVAAREEAPFVTIKEVQQR---GKVSKALIEKL---------- 1497

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNR---TNKHENIF 927
                QL+    +++       K      +    +F
Sbjct: 1498 ----QLMNVFGDMELGNDKPAKAATQPPSNQLTLF 1528



 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 37/89 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS  S ++G   + + + + A     AIA+TD   + +  +    A    I+ I 
Sbjct: 347 VELHVHSKMSAMDGVTDIGDYIKQAAKWGHKAIALTDHGVVQAIPDAYHAAKKNDIKIIY 406

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           G +  +   + L   N+   P      +V
Sbjct: 407 GVEGYLVEDEPLLAWNEKSIPLNDATYVV 435


>gi|325843612|ref|ZP_08168008.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
            sp. HGF1]
 gi|325489298|gb|EGC91675.1| DNA polymerase III, alpha subunit, Gram-positive type [Turicibacter
            sp. HGF1]
          Length = 1528

 Score =  197 bits (501), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 148/995 (14%), Positives = 301/995 (30%), Gaps = 220/995 (22%)

Query: 70   IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
            I+   +    + N  +  +          + +L     G++ L ++VS+    D      
Sbjct: 617  ILKLDIKTHDEVNQLVDKETSFKLDRTTHVTILAQNQVGFKNLFKVVSQSMTCD-LYGQP 675

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            RI  S+L +   EGL++ +   +G +  +      +  +++   +        Y+ +Q  
Sbjct: 676  RIRRSYL-QAHREGLLIGSSCVNGEVWESALNKPYEDLQEKAKFYD-------YLEVQPP 727

Query: 190  RGYDRYRESQVVQLAY--------------THELPLVATNNSLFLSEEDYEAHDVLMAVA 235
              Y    +    ++A                  +P+ AT +   L+ ED     +     
Sbjct: 728  EVYSHLIDQNSKEMAQSIIETIKTIIKVGEELNIPVCATGDVHHLNREDKLYRQIY---- 783

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
              T +    R  +      +  S       ++        E  ++   +   +A      
Sbjct: 784  TRTPMIGGGRHPLNHPDIKEIPSMHFRTTDEMYHDFSFLDEAKQKEIIVTNPNAIADSCE 843

Query: 296  IEKECDDIQKEE-ENELRNK----AVAGLEVRLAQGAIAK--GYHAQDYRQRLDFELNVI 348
            + K   D      ++ L++K        L     + A         Q    RL  ELN I
Sbjct: 844  MIKAIKDELFTPADDFLKDKGIPSIKDRLTEMCYERAHEWYGEELPQYVLDRLIKELNSI 903

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL---------- 398
                F+  + I    ++ +  +   VG  RGS   S  A    IT+++PL          
Sbjct: 904  IGNGFAVIYYISHMLVKKSLDDGYLVG-SRGSVGSSFVATLTDITEVNPLSPHYRCPNCL 962

Query: 399  --------------------------------------RFSLLFERFLNPDRMSMP---- 416
                                                           +  D   +P    
Sbjct: 963  FAAFKMNEEEKQRYGIRPEEEAFQDILANAESGFDLPDATCPHCGTKMRKDGHDIPFETF 1022

Query: 417  ---------DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
                     D D++F  + +     Y +  +G +   +  T G++  K A   V      
Sbjct: 1023 LGFKGDKVPDIDLNFSGEYQPVAHLYCREVFGDDFAFRAGTIGTVAEKTAFGYV------ 1076

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
                                    + D +R             +  +++  EG+ R +  
Sbjct: 1077 ---------------------KGFLEDTNREMRTAE-------IERMAKGCEGVRRTSGQ 1108

Query: 528  HAAGI--VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKS 585
            H  GI  V     +  + P+      D P  ++     +   +   + L L  L     +
Sbjct: 1109 HPGGIIVVPNYMDIYDVTPIQYPA--DDPTAEWRTTHFDFHSIH-DNLLKLDILGHDDPT 1165

Query: 586  LDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQLESSGMRQA 631
            +    Q    +D   IP DD E Y L  +                + G+ +  +  +R  
Sbjct: 1166 VIRYLQDISGIDPKDIPTDDPEVYKLFYSTESLGVTPEQIRSTTGSYGVPEFGTPFVRNM 1225

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            LE  +P    +++ +  L          V+ N                      + VI  
Sbjct: 1226 LEDTKPKTFAELVKISGLSH-----GTDVWLNNAADLVSGKYDKFGKVEF----KNVIGC 1276

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            ++ +  +  +  G   + A  +   + K +  +     + F     K+ I +    +  +
Sbjct: 1277 RDDI-MVYLMYGGLEPALAFKIMEFVRKGLASKNPDGWKEFEEEMRKHKIPEWYIWSCGQ 1335

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKI 802
            +      Y F K+HA AY +++ + AW K H+P+ +  A  +   D           + I
Sbjct: 1336 I-----KYMFPKAHATAYVLMAIRIAWFKVHHPIYYYCAYFSKRADVFEMETMIKGPDAI 1390

Query: 803  KKFCQDARQFNIQIMPPSVNTP-------------------------CVDFKV--GDNRI 835
            +K   +  +      P   N                            VDFK+      +
Sbjct: 1391 RKRLDEIEEKGFDATPKEKNLVTILEIALEMTERGFYFQNFNIEESNAVDFKISEDGKSL 1450

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                 A+ G+G   AR I+ A  + PF ++++   R    K+++ ++E L          
Sbjct: 1451 IPPFTALDGLGENVARQIVAAREEAPFVTIKEVQQR---GKVSKALIEKL---------- 1497

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNR---TNKHENIF 927
                QL+    +++       K      +    +F
Sbjct: 1498 ----QLMNVFGDMELGNDKPAKAATQPPSNQLTLF 1528



 Score = 97.9 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 37/89 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS  S ++G   + + + + A     AIA+TD   + +  +    A    I+ I 
Sbjct: 347 VELHVHSKMSAMDGVTDIGDYIKQAAKWGHKAIALTDHGVVQAIPDAYHAAKKNDIKIIY 406

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           G +  +   + L   N+   P      +V
Sbjct: 407 GVEGYLVEDEPLLAWNEKSIPLNDATYVV 435


>gi|13959345|sp|Q9CDT7|DPO3_LACLA RecName: Full=DNA polymerase III polC-type; Short=PolIII
          Length = 1638

 Score =  197 bits (501), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 143/930 (15%), Positives = 293/930 (31%), Gaps = 186/930 (20%)

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            +++ D L   +  K   P    + L   T EG + L ++VS   +        R+  S L
Sbjct: 770  LELNDKLVSEDSYKKVRPK--HVTLYAKTQEGLKNLFKIVSFGNVK-YYAGLPRVPRSVL 826

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYVNLQRHRG--- 191
             E   EGL++ +    G +  A    + +   +    +   ++F   LY +L        
Sbjct: 827  -EANREGLLVGSACEIGEVFDAAINKTFEETLEIAKFYDFIEVFPPALYRSLVVGGSFKS 885

Query: 192  --YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV---------AHSTVV 240
                      ++++  T   P++AT N  +L+ ED    ++++                 
Sbjct: 886  EKELEQTLKDLIKIGKTLGKPVLATGNLHYLNPEDAIYREIIVRSLGLGAEINWTQGHGE 945

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK-E 299
              K  P         +       F D   A E  ++  ++ +    V  P+         
Sbjct: 946  HAKPLPLPEAHFRTTDEMLEAFSFLDEKTAREIVIDNTQKMADEFDVLTPVRDDLYTPKM 1005

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              D  +  E  +                            RL+ EL  I    FS  ++I
Sbjct: 1006 VFDGGETSEERIVRLTYEKAHEWYGNPL------PDIIDARLEKELRSILGNGFSVVYII 1059

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------- 399
              + ++ +      VG  RGS   S+ A  + IT+++PL                     
Sbjct: 1060 SQELVKRSNDRGYIVG-SRGSVGSSLVATMIGITEVNPLAPHYRCPECQYFECYDDGSFG 1118

Query: 400  ---------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
                                   + FE FL      +PD D++F  D +      V++ +
Sbjct: 1119 SGYDMPDKNCPKCDHKLIKDGHDIPFETFLGFKGDKVPDIDLNFSGDDQPLAHLDVRDIF 1178

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G +   +  T G++  K A   V +  +  Y Q     +                     
Sbjct: 1179 GEDYAFRAGTIGTVAEKTAFGFV-KGYERDYDQFYGNAE--------------------- 1216

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DL 553
                        +  ++    G+ R    H  GI+       +    P+         + 
Sbjct: 1217 ------------IDRLAAGSTGVKRTTGQHPGGIIVIPNYMDVYDFSPVQFPADDVNAEW 1264

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT 613
              T F+   I    ++K D LG    T+++K      Q    +    IP DD     L T
Sbjct: 1265 QTTHFDFHAIHD-NILKLDILGHDDPTMIRK-----LQSLSGIVPQDIPMDDPGVMKLFT 1318

Query: 614  TKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
                             TLGI ++ +      +   +P    D++ +  L          
Sbjct: 1319 GTESLGLTEEQLGVKLGTLGIPEMGTFTSMNMIAEAKPKNFADLLQISGLSHG------- 1371

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                  N ++ I S    +  ++     +++Y         +  G     A  +   + K
Sbjct: 1372 TDVWSGNAQDLIRSGIADLSSVIGCRDDIMVYL--------IHKGLENGLAFTIMERVRK 1423

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
                +   +++E+++    ++ + +    +  ++      Y F K+HAAAY +++ + A+
Sbjct: 1424 GMWNKIPAEEREKYVEAMREHDVPEWYIESCSKI-----KYMFPKAHAAAYIMMALRVAY 1478

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKK---------------------------------F 805
             K H+P+ +  A  ++     +                                      
Sbjct: 1479 FKVHHPILYYCAWFSIRATAFDIGVMGAGLEAVKAKMKEIKDKGFDATNVETNLYTTLEL 1538

Query: 806  CQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
            C +  +         +      +F +  + +      + G+G   A+ I+ A A+  F S
Sbjct: 1539 CNEMLERGFTFGKIDLYRSEATEFVIDGDTLIPPFVTMDGLGENVAKQIVAARAEGEFLS 1598

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              +   R     +++ ++E++   G L+  
Sbjct: 1599 KMELRKR---GGVSQTIIENMTNMGVLEGM 1625



 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   S ++++ + A     AIAITD   L S  E        G++ I 
Sbjct: 510 VEFHAHTNMSQMDAIPSASSLVAQAAKWGHKAIAITDHGGLQSFPEAHSAGKKNGVKIIY 569

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       + N+          +V 
Sbjct: 570 GVEANLVEDKIPIVYNETDVDMYESTYVVF 599


>gi|15674106|ref|NP_268281.1| DNA polymerase III PolC [Lactococcus lactis subsp. lactis Il1403]
 gi|12725180|gb|AAK06222.1|AE006440_8 DNA polymerase III, alpha chain [Lactococcus lactis subsp. lactis
            Il1403]
          Length = 1658

 Score =  197 bits (501), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 143/930 (15%), Positives = 293/930 (31%), Gaps = 186/930 (20%)

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            +++ D L   +  K   P    + L   T EG + L ++VS   +        R+  S L
Sbjct: 790  LELNDKLVSEDSYKKVRPK--HVTLYAKTQEGLKNLFKIVSFGNVK-YYAGLPRVPRSVL 846

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYVNLQRHRG--- 191
             E   EGL++ +    G +  A    + +   +    +   ++F   LY +L        
Sbjct: 847  -EANREGLLVGSACEIGEVFDAAINKTFEETLEIAKFYDFIEVFPPALYRSLVVGGSFKS 905

Query: 192  --YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV---------AHSTVV 240
                      ++++  T   P++AT N  +L+ ED    ++++                 
Sbjct: 906  EKELEQTLKDLIKIGKTLGKPVLATGNLHYLNPEDAIYREIIVRSLGLGAEINWTQGHGE 965

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK-E 299
              K  P         +       F D   A E  ++  ++ +    V  P+         
Sbjct: 966  HAKPLPLPEAHFRTTDEMLEAFSFLDEKTAREIVIDNTQKMADEFDVLTPVRDDLYTPKM 1025

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              D  +  E  +                            RL+ EL  I    FS  ++I
Sbjct: 1026 VFDGGETSEERIVRLTYEKAHEWYGNPL------PDIIDARLEKELRSILGNGFSVVYII 1079

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------- 399
              + ++ +      VG  RGS   S+ A  + IT+++PL                     
Sbjct: 1080 SQELVKRSNDRGYIVG-SRGSVGSSLVATMIGITEVNPLAPHYRCPECQYFECYDDGSFG 1138

Query: 400  ---------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
                                   + FE FL      +PD D++F  D +      V++ +
Sbjct: 1139 SGYDMPDKNCPKCDHKLIKDGHDIPFETFLGFKGDKVPDIDLNFSGDDQPLAHLDVRDIF 1198

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G +   +  T G++  K A   V +  +  Y Q     +                     
Sbjct: 1199 GEDYAFRAGTIGTVAEKTAFGFV-KGYERDYDQFYGNAE--------------------- 1236

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DL 553
                        +  ++    G+ R    H  GI+       +    P+         + 
Sbjct: 1237 ------------IDRLAAGSTGVKRTTGQHPGGIIVIPNYMDVYDFSPVQFPADDVNAEW 1284

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT 613
              T F+   I    ++K D LG    T+++K      Q    +    IP DD     L T
Sbjct: 1285 QTTHFDFHAIHD-NILKLDILGHDDPTMIRK-----LQSLSGIVPQDIPMDDPGVMKLFT 1338

Query: 614  TKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
                             TLGI ++ +      +   +P    D++ +  L          
Sbjct: 1339 GTESLGLTEEQLGVKLGTLGIPEMGTFTSMNMIAEAKPKNFADLLQISGLSHG------- 1391

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                  N ++ I S    +  ++     +++Y         +  G     A  +   + K
Sbjct: 1392 TDVWSGNAQDLIRSGIADLSSVIGCRDDIMVYL--------IHKGLENGLAFTIMERVRK 1443

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
                +   +++E+++    ++ + +    +  ++      Y F K+HAAAY +++ + A+
Sbjct: 1444 GMWNKIPAEEREKYVEAMREHDVPEWYIESCSKI-----KYMFPKAHAAAYIMMALRVAY 1498

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKK---------------------------------F 805
             K H+P+ +  A  ++     +                                      
Sbjct: 1499 FKVHHPILYYCAWFSIRATAFDIGVMGAGLEAVKAKMKEIKDKGFDATNVETNLYTTLEL 1558

Query: 806  CQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
            C +  +         +      +F +  + +      + G+G   A+ I+ A A+  F S
Sbjct: 1559 CNEMLERGFTFGKIDLYRSEATEFVIDGDTLIPPFVTMDGLGENVAKQIVAARAEGEFLS 1618

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              +   R     +++ ++E++   G L+  
Sbjct: 1619 KMELRKR---GGVSQTIIENMTNMGVLEGM 1645



 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   S ++++ + A     AIAITD   L S  E        G++ I 
Sbjct: 530 VEFHAHTNMSQMDAIPSASSLVAQAAKWGHKAIAITDHGGLQSFPEAHSAGKKNGVKIIY 589

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       + N+          +V 
Sbjct: 590 GVEANLVEDKIPIVYNETDVDMYESTYVVF 619


>gi|260663976|ref|ZP_05864829.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii SJ-7A-US]
 gi|260561862|gb|EEX27831.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii SJ-7A-US]
          Length = 1439

 Score =  197 bits (501), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 145/874 (16%), Positives = 279/874 (31%), Gaps = 171/874 (19%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                + +L  T +G + + +LVS         +  R  +S L++   EGL+  +G   G 
Sbjct: 611  KPTHMTVLALTQKGLKNMYKLVSLASTQ-YFYREPRTPISELRKY-REGLLFGSGCWKGD 668

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--------------HRGYDRYRESQV 200
            +           A ++   +        ++ +Q                          +
Sbjct: 669  VFITMMQKGYDEAREKARFYD-------FLEVQPPAAYSQLIADELIKDEEQLEEILKNI 721

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
             +L     +P+VAT +  +L+ ED    ++L+A   S     K +P++      +     
Sbjct: 722  YKLGQELNIPVVATGDCHYLNPEDKIYREILIAAQRSNPNRNKPQPKLHFYSTQEMLDAF 781

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
              +  D+  A E  ++   + +  ++  AP+          D  ++  +   NKA     
Sbjct: 782  NFMGEDV--AKEIVIDNTNKIADEIEEIAPVKSGLYPPHIKDADQQMTDLTYNKAYE--- 836

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                   +      +  + R++ ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 837  -------LYGKPLPKIVKDRIELELNSIISNGYAVIYLISQKLVAKSNKDGYLVG-SRGS 888

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 889  VGSSLVATMSGITEVNPLAPHYRCPKCKYSHFFENGEYGSGFDLPDKKCPECGTELVKDG 948

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + F  FL      +PD D++F  D +     Y++  +G     +  T  ++  K A  
Sbjct: 949  QDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNYIRVMFGPANSFRAGTISTVADKTAYG 1008

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                                                  F E R  +     L  ++    
Sbjct: 1009 YA----------------------------------KHFEEERNLNLRSAELDRLATGTS 1034

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGIV+      +    P+             T F+   I    ++KFD L
Sbjct: 1035 GVKRTTGQHPAGIVVVPDDMDIYDFTPVQYPADDLNAAWLTTHFDFHSIHD-NILKFDIL 1093

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQAL 632
            G    T+++     + Q    VD   IP DD     L +    LG+   Q+ S      +
Sbjct: 1094 GHDDPTMIR-----MLQDLSGVDPMTIPPDDPGVMSLFSGTDILGVTPEQIASKTGTLGV 1148

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
                   +  ++           + + +          + +   L++    + + VI  +
Sbjct: 1149 PEFGTKFVRGMLEE--TNPTTFSELLQISGLSHGTDVWLGNAEDLVNNGTCKLKNVIGCR 1206

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            + +M    +  G     A     ++        D       +    +    +        
Sbjct: 1207 DNIMM-DLIHWGVKPEVAFSTMESVRHGRGISDDDMAVLKKNNNIPDWYIPSCLKI---- 1261

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK-------- 804
                  Y F K+HA AY +++ + AW K +YPV +  +  ++  D  + +          
Sbjct: 1262 -----KYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYFSVRADLFDLVAMSHGKNSVK 1316

Query: 805  -------------------------FCQDARQFNIQIMPPSVNTPCV-DFK-VGDNRIYY 837
                                        +  +  I+I    VN     +FK V D+ I  
Sbjct: 1317 AAIKKIQDQGNDASAKDKSLLTVLEIANECLERGIKIKMVDVNESEALNFKIVDDHTILA 1376

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
               A+ G+G   A+ I+ A A++ F S ED  +R
Sbjct: 1377 PFNAVPGLGDNAAKQIVAARAEQKFLSKEDLRTR 1410



 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S L+   +  + +       Q AIAITD  ++ S  E         ++ + 
Sbjct: 336 VELHLHTIMSQLDATNTATDFISTAKKFGQKAIAITDHGDVQSFPEAYSAGKKQKMKILY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 396 GLEANMVDDHALLVLNPASMTYENREFVIF 425


>gi|169350436|ref|ZP_02867374.1| hypothetical protein CLOSPI_01204 [Clostridium spiroforme DSM 1552]
 gi|169292756|gb|EDS74889.1| hypothetical protein CLOSPI_01204 [Clostridium spiroforme DSM 1552]
          Length = 1439

 Score =  197 bits (501), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 145/923 (15%), Positives = 270/923 (29%), Gaps = 197/923 (21%)

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
              +  L     G + + +LVS            RI    L E   EGL+  +   +  + 
Sbjct: 593  YHMCALALNKTGLKNMFKLVSEANTK-YFHGESRIPKERL-EYYREGLLFGSSCYNSDVF 650

Query: 157  RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY------------DRYR--ESQVVQ 202
             A    S +  E  +  +        Y+ +Q    Y            D       ++V 
Sbjct: 651  EAALNLSDERLENAMKFYD-------YIEIQPLEDYFHLIERGKLQDKDELIKSLQRIVT 703

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAV-----AHSTVVSQKDRPRVTPDHYLKNR 257
             A      +VAT +  FL  +D    DV ++       H        R     +     R
Sbjct: 704  CAKKLNKIIVATGDVHFLDVKDRIFRDVFISNPTIGIGHKAHPLCDRRNPKAKNPCQYLR 763

Query: 258  SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
            +    +      + E T E     +  +      +    +K         +  L+     
Sbjct: 764  TTDEMLECYPYLSKEETFEYVVTNTNKIADMVEEIKPIHDKLFTPKIDGADENLKKLCYE 823

Query: 318  GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
                                 +RL+ EL+ I +  F   + I    ++ +  +   VG  
Sbjct: 824  TAHKTYGNPL------PSIVEKRLEKELSNIIKHGFGVIYYISHLLVKKSNDDGYLVG-S 876

Query: 378  RGSGAGSVTAYALTITDIDPLR-------------------------------------- 399
            RGS   S  A    IT+++PL                                       
Sbjct: 877  RGSVGSSFVATMSGITEVNPLPPHYVCPNCTYSEFLEEGTIADGYDLEDKPCPKCGTIMK 936

Query: 400  ---FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
                ++ FE FL  +   +PD D++F  + +     + +  +G + V +  T  ++  K 
Sbjct: 937  GEGHNIPFETFLGFNADKVPDIDLNFSGEYQANAHAFTKEIFGEDHVFRAGTISTVAEKT 996

Query: 457  ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            A                   K          S+++                   L  I+ 
Sbjct: 997  AYG---------------YAKGYAELMGKDQSIRSAE-----------------LERIAA 1024

Query: 517  KLEGLYRHASTHAAGIVIGDRPLS--QLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKF 571
               G+ R    H  GI++  R +      P              T F+   I        
Sbjct: 1025 GCGGVKRTTGQHPGGIIVIPRDMDVFDFTPYQYPADDLSATWKTTHFDFHAIHD------ 1078

Query: 572  DFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI----------- 620
            + L    L  +  ++    Q    VD   IP +D +   L T+   LG            
Sbjct: 1079 NVLKFDILGHVDPTVIRALQDLTGVDPKTIPTNDKKVMSLFTSSKALGCDLEFIGCKSGA 1138

Query: 621  ---FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
                +  ++ +R  L+  QP    D++ +  L     +                      
Sbjct: 1139 LGLPEFGTNFVRGMLDQTQPKSFSDLVIISGLSHGTDVYLGNA---------------ES 1183

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            +      T   +I     + +  +  G    +A  +   + K     +   K ++     
Sbjct: 1184 LIKSGTCTLSEVIGCRDDIMVYLIEKGLPNKDAFDIMECVRKGKSTAVFP-KMQYEELMK 1242

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            K+ + +    +  ++      Y F K+HA AY + + + AW K +YP E+ A   +   D
Sbjct: 1243 KHNVPQWYIESCKKI-----KYMFPKAHAVAYVLSAIRVAWWKVYYPREYYAVYFSTRCD 1297

Query: 798  NV---------EKIKKFCQDARQFNIQIMPPSVNTPCVD-FKV----------------- 830
                       + I    ++  Q   Q    +      D F++                 
Sbjct: 1298 FYEIETLIQGKDAIMARREEIAQLKAQRSASNKEEGLWDVFEIALEMIERGYHFNPISLQ 1357

Query: 831  ------------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
                         +  +    +A+  +G   A+ +++A    PF S ED   R    KLN
Sbjct: 1358 YSQASKFILDPNDEFGLIPPFSAVDALGEAVAKTVIDARNQAPFLSKEDVIKRT---KLN 1414

Query: 879  RRVLESLVFAGALDCFGYSRMQL 901
               +++L   G  +     R QL
Sbjct: 1415 NSHIKTLTKMGVFNGM-QERNQL 1436



 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 34/66 (51%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS  S ++G  ++   +  +A+    AIA+TD  N+ S  E    +  AGI+ I 
Sbjct: 316 VELHTHSKMSAMDGIGTIEQYIKTVASWGHKAIAVTDHGNVQSFPEAQSASLQAGIKMIY 375

Query: 72  GCQLDI 77
           G + ++
Sbjct: 376 GVEFNM 381


>gi|282932865|ref|ZP_06338262.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 208-1]
 gi|281302900|gb|EFA95105.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 208-1]
          Length = 1439

 Score =  197 bits (500), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 145/874 (16%), Positives = 279/874 (31%), Gaps = 171/874 (19%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                + +L  T +G + + +LVS         +  R  +S L++   EGL+  +G   G 
Sbjct: 611  KPTHMTVLALTQKGLKNMYKLVSLASTQ-YFYREPRTPISELRKY-REGLLFGSGCWKGD 668

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--------------HRGYDRYRESQV 200
            +           A ++   +        ++ +Q                          +
Sbjct: 669  VFITMMQKGYDEAREKARFYD-------FLEVQPPAAYSQLIADELIKDEEQLEEILKNI 721

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
             +L     +P+VAT +  +L+ ED    ++L+A   S     K +P++      +     
Sbjct: 722  YKLGQELNIPVVATGDCHYLNPEDKIYREILIAAQRSNPNRNKSQPKLHFYSTQEMLDAF 781

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
              +  D+  A E  ++   + +  ++  AP+          D  ++  +   NKA     
Sbjct: 782  NFMGEDV--AKEIVIDNTNKIADEIEEIAPVKSGLYPPHIKDADQQMTDLTYNKAYE--- 836

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                   +      +  + R++ ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 837  -------LYGKPLPKIVKDRIELELNSIISNGYAVIYLISQKLVAKSNKDGYLVG-SRGS 888

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 889  VGSSLVATMSGITEVNPLAPHYRCPKCKYSHFFENGEYGSGFDLPDKKCPECGTELVKDG 948

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + F  FL      +PD D++F  D +     Y++  +G     +  T  ++  K A  
Sbjct: 949  QDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNYIRVMFGPANSFRAGTISTVADKTAYG 1008

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                                                  F E R  +     L  ++    
Sbjct: 1009 YA----------------------------------KHFEEERNLNLRSAELDRLATGTS 1034

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGIV+      +    P+             T F+   I    ++KFD L
Sbjct: 1035 GVKRTTGQHPAGIVVVPDDMDIYDFTPVQYPADDLNAAWLTTHFDFHSIHD-NILKFDIL 1093

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQAL 632
            G    T+++     + Q    VD   IP DD     L +    LG+   Q+ S      +
Sbjct: 1094 GHDDPTMIR-----MLQDLSGVDPMTIPPDDPGVMSLFSGTDILGVTPEQIASKTGTLGV 1148

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
                   +  ++           + + +          + +   L++    + + VI  +
Sbjct: 1149 PEFGTKFVRGMLEE--TNPTTFSELLQISGLSHGTDVWLGNAEDLVNNGTCKLKNVIGCR 1206

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            + +M    +  G     A     ++        D       +    +    +        
Sbjct: 1207 DNIMM-DLIHWGVKPEVAFSTMESVRHGRGISDDDMAVLKKNNNIPDWYIPSCLKI---- 1261

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK-------- 804
                  Y F K+HA AY +++ + AW K +YPV +  +  ++  D  + +          
Sbjct: 1262 -----KYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYFSVRADLFDLVAMSHGKNSVK 1316

Query: 805  -------------------------FCQDARQFNIQIMPPSVNTPCV-DFK-VGDNRIYY 837
                                        +  +  I+I    VN     +FK V D+ I  
Sbjct: 1317 AAIKKIQDQGNDASAKDKSLLTVLEIANECLERGIKIKMVDVNESEALNFKIVDDHTILA 1376

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
               A+ G+G   A+ I+ A A++ F S ED  +R
Sbjct: 1377 PFNAVPGLGDNAAKQIVAARAEQKFLSKEDLRTR 1410



 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S L+   +  + +       Q AIAITD  ++ S  E         ++ + 
Sbjct: 336 VELHLHTIMSQLDATNTATDFISTAKKFGQKAIAITDHGDVQSFPEAYSAGKKQKMKILY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 396 GLEANMVDDHALLVLNPASMTYENREFVIF 425


>gi|313472267|ref|ZP_07812759.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 1153]
 gi|239529663|gb|EEQ68664.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 1153]
          Length = 1428

 Score =  197 bits (500), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 145/874 (16%), Positives = 279/874 (31%), Gaps = 171/874 (19%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                + +L  T +G + + +LVS         +  R  +S L++   EGL+  +G   G 
Sbjct: 600  KPTHMTVLALTQKGLKNMYKLVSLASTQ-YFYREPRTPISELRKY-REGLLFGSGCWKGD 657

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--------------HRGYDRYRESQV 200
            +           A ++   +        ++ +Q                          +
Sbjct: 658  VFITMMQKGYDEAREKARFYD-------FLEVQPPAAYSQLIADELIKDEEQLEEILKNI 710

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
             +L     +P+VAT +  +L+ ED    ++L+A   S     K +P++      +     
Sbjct: 711  YKLGQELNIPVVATGDCHYLNPEDKIYREILIAAQRSNPNRNKSQPKLHFYSTQEMLDAF 770

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
              +  D+  A E  ++   + +  ++  AP+          D  ++  +   NKA     
Sbjct: 771  NFMGEDV--AKEIVIDNTNKIADEIEEIAPVKSGLYPPHIKDADQQMTDLTYNKAYE--- 825

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                   +      +  + R++ ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 826  -------LYGKPLPKIVKDRIELELNSIISNGYAVIYLISQKLVAKSNKDGYLVG-SRGS 877

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 878  VGSSLVATMSGITEVNPLAPHYRCPKCKYSHFFENGEYGSGFDLPDKKCPECGTELVKDG 937

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + F  FL      +PD D++F  D +     Y++  +G     +  T  ++  K A  
Sbjct: 938  QDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNYIRVMFGPANSFRAGTISTVADKTAYG 997

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                                                  F E R  +     L  ++    
Sbjct: 998  YA----------------------------------KHFEEERNLNLRSAELDRLATGTS 1023

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGIV+      +    P+             T F+   I    ++KFD L
Sbjct: 1024 GVKRTTGQHPAGIVVVPDDMDIYDFTPVQYPADDLNAAWLTTHFDFHSIHD-NILKFDIL 1082

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQAL 632
            G    T+++     + Q    VD   IP DD     L +    LG+   Q+ S      +
Sbjct: 1083 GHDDPTMIR-----MLQDLSGVDPMTIPPDDPGVMSLFSGTDILGVTPEQIASKTGTLGV 1137

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
                   +  ++           + + +          + +   L++    + + VI  +
Sbjct: 1138 PEFGTKFVRGMLEE--TNPTTFSELLQISGLSHGTDVWLGNAEDLVNNGTCKLKNVIGCR 1195

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            + +M    +  G     A     ++        D       +    +    +        
Sbjct: 1196 DNIMM-DLIHWGVKPEVAFSTMESVRHGRGISDDDMAVLKKNNNIPDWYIPSCLKI---- 1250

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK-------- 804
                  Y F K+HA AY +++ + AW K +YPV +  +  ++  D  + +          
Sbjct: 1251 -----KYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYFSVRADLFDLVAMSHGKNSVK 1305

Query: 805  -------------------------FCQDARQFNIQIMPPSVNTPCV-DFK-VGDNRIYY 837
                                        +  +  I+I    VN     +FK V D+ I  
Sbjct: 1306 AAIKKIQDQGNDASAKDKSLLTVLEIANECLERGIKIKMVDVNESEALNFKIVDDHTILA 1365

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
               A+ G+G   A+ I+ A A++ F S ED  +R
Sbjct: 1366 PFNAVPGLGDNAAKQIVAARAEQKFLSKEDLRTR 1399



 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S L+   +  + +       Q AIAITD  ++ S  E         ++ + 
Sbjct: 325 VELHLHTIMSQLDATNTATDFISTAKKFGQKAIAITDHGDVQSFPEAYSAGKKQKMKILY 384

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 385 GLEANMVDDHALLVLNPASMTYENREFVIF 414


>gi|238854744|ref|ZP_04645074.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 269-3]
 gi|238832534|gb|EEQ24841.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 269-3]
          Length = 1405

 Score =  197 bits (500), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 145/874 (16%), Positives = 279/874 (31%), Gaps = 171/874 (19%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                + +L  T +G + + +LVS         +  R  +S L++   EGL+  +G   G 
Sbjct: 577  KPTHMTVLALTQKGLKNMYKLVSLASTQ-YFYREPRTPISELRKY-REGLLFGSGCWKGD 634

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--------------HRGYDRYRESQV 200
            +           A ++   +        ++ +Q                          +
Sbjct: 635  VFITMMQKGYDEAREKARFYD-------FLEVQPPAAYSQLIADELIKDEEQLEEILKNI 687

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
             +L     +P+VAT +  +L+ ED    ++L+A   S     K +P++      +     
Sbjct: 688  YKLGQELNIPVVATGDCHYLNPEDKIYREILIAAQRSNPNRNKSQPKLHFYSTQEMLDAF 747

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
              +  D+  A E  ++   + +  ++  AP+          D  ++  +   NKA     
Sbjct: 748  NFMGEDV--AKEIVIDNTNKIADEIEEIAPVKSGLYPPHIKDADQQMTDLTYNKAYE--- 802

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                   +      +  + R++ ELN I    ++  +LI    +  + K+   VG  RGS
Sbjct: 803  -------LYGKPLPKIVKDRIELELNSIISNGYAVIYLISQKLVAKSNKDGYLVG-SRGS 854

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A    IT+++PL                                          
Sbjct: 855  VGSSLVATMSGITEVNPLAPHYRCPKCKYSHFFENGEYGSGFDLPDKKCPECGTELVKDG 914

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + F  FL      +PD D++F  D +     Y++  +G     +  T  ++  K A  
Sbjct: 915  QDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHNYIRVMFGPANSFRAGTISTVADKTAYG 974

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
                                                  F E R  +     L  ++    
Sbjct: 975  YA----------------------------------KHFEEERNLNLRSAELDRLATGTS 1000

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H AGIV+      +    P+             T F+   I    ++KFD L
Sbjct: 1001 GVKRTTGQHPAGIVVVPDDMDIYDFTPVQYPADDLNAAWLTTHFDFHSIHD-NILKFDIL 1059

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQAL 632
            G    T+++     + Q    VD   IP DD     L +    LG+   Q+ S      +
Sbjct: 1060 GHDDPTMIR-----MLQDLSGVDPMTIPPDDPGVMSLFSGTDILGVTPEQIASKTGTLGV 1114

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
                   +  ++           + + +          + +   L++    + + VI  +
Sbjct: 1115 PEFGTKFVRGMLEE--TNPTTFSELLQISGLSHGTDVWLGNAEDLVNNGTCKLKNVIGCR 1172

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
            + +M    +  G     A     ++        D       +    +    +        
Sbjct: 1173 DNIMM-DLIHWGVKPEVAFSTMESVRHGRGISDDDMAVLKKNNNIPDWYIPSCLKI---- 1227

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK-------- 804
                  Y F K+HA AY +++ + AW K +YPV +  +  ++  D  + +          
Sbjct: 1228 -----KYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYFSVRADLFDLVAMSHGKNSVK 1282

Query: 805  -------------------------FCQDARQFNIQIMPPSVNTPCV-DFK-VGDNRIYY 837
                                        +  +  I+I    VN     +FK V D+ I  
Sbjct: 1283 AAIKKIQDQGNDASAKDKSLLTVLEIANECLERGIKIKMVDVNESEALNFKIVDDHTILA 1342

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
               A+ G+G   A+ I+ A A++ F S ED  +R
Sbjct: 1343 PFNAVPGLGDNAAKQIVAARAEQKFLSKEDLRTR 1376



 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S L+   +  + +       Q AIAITD  ++ S  E         ++ + 
Sbjct: 302 VELHLHTIMSQLDATNTATDFISTAKKFGQKAIAITDHGDVQSFPEAYSAGKKQKMKILY 361

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 362 GLEANMVDDHALLVLNPASMTYENREFVIF 391


>gi|218462029|ref|ZP_03502120.1| DNA polymerase III protein, alpha subunit [Rhizobium etli Kim 5]
          Length = 523

 Score =  197 bits (500), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 141/518 (27%), Positives = 237/518 (45%), Gaps = 27/518 (5%)

Query: 217 SLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            L+   E     DV++A+     +           + YLK+  EM+ IF D P+A+ENT 
Sbjct: 11  PLYHHPERRPLSDVVIAIREHVQISQAGFLLAPNAERYLKDSREMMRIFGDYPDAVENTQ 70

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
               + +F L+              +D  +  +  L     AG   R   G         
Sbjct: 71  VFFGKLTFSLKELQHNY-----PPENDPGETPQQTLERLTRAGAARRYPGGV------PP 119

Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
              Q++D+EL +I    ++ YFL V   IQ A+ +   +  GRGS A SV  Y L IT++
Sbjct: 120 KVAQQIDYELKLIGDKNYASYFLTVHRIIQHARYDLKVLCQGRGSAANSVICYCLEITEV 179

Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
           DP + +LLF+RF++ DR   PD D+DF  DRR+EVI+++  +YG E         + + +
Sbjct: 180 DPQKSTLLFDRFISMDRDEPPDIDVDFEHDRREEVIQFIYGRYGIEHAGLTAGVTTYRTR 239

Query: 456 AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
           +A R+V +A  +       +  L+       +S      D++     + DP    +L+ +
Sbjct: 240 SAGREVAKAFGLSEDVQSAISSLVWGWSEDNLS----DRDAKAAGLDVKDPLTQNVLQYA 295

Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            +L G  RH + H  G VI    L ++VP+ +    D  + +++   ++   ++K D L 
Sbjct: 296 SELLGFPRHLTQHVGGFVITRDRLDEVVPIMKTAMPDRYMIEWDKDDLDNVKILKVDVLA 355

Query: 576 LKTLTLLQKSLDFLAQRGVKVDL------SLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
           L  LT L+K+   L                    +    Y ++    TLG+FQ+ES    
Sbjct: 356 LGMLTCLRKAFSLLELHYDVKKTLADLGNREHGDEGKPVYEMMGRADTLGVFQIESRAQM 415

Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN-----NRKNGKEKIVSIHPLIDPMLKE 684
             L  ++P    D++  V++ RPGPI   +V+       ++     +      ++ +L+ 
Sbjct: 416 SMLPRLKPKIFYDLVIEVAIVRPGPIQGDMVHPYLKRREQRARNIPVKYPSKELEAVLER 475

Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
           T GV ++QEQ MQIA   +G+  +EAD LRRAM    +
Sbjct: 476 TLGVPLFQEQAMQIAITAAGFRPAEADKLRRAMATFKR 513


>gi|160902928|ref|YP_001568509.1| DNA polymerase III PolC [Petrotoga mobilis SJ95]
 gi|160360572|gb|ABX32186.1| DNA polymerase III, alpha subunit [Petrotoga mobilis SJ95]
          Length = 1388

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 157/950 (16%), Positives = 310/950 (32%), Gaps = 200/950 (21%)

Query: 54   SALEFSQKACAAGI------QPIIGCQL----DIDMQDNLKMTNQGKTPFPTVP-SIVLL 102
             + E  +    A I      + I   ++    +++M  +L+   +        P    +L
Sbjct: 519  GSFEHHRAHEDANITALVFLKLI---EMAKSQNVEMLSDLEKLKKFIDFKRIQPNDTTIL 575

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
            V    G + L +LVS  ++     +  RI  S L  +    LI  +G   G I + +   
Sbjct: 576  VKNKTGLKNLYKLVSNAHVK-YFYRVPRILKSELSRMREGLLIGSSGTEDGEIFQTYLRG 634

Query: 163  S-SQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR---------YRESQVVQLAYTHELPLV 212
                   +    +        Y+ L                      +  L     +P+V
Sbjct: 635  GSHDEIIEIAKFYD-------YLELTPLDALSDKTISEEQLKKIYQDIYNLGNELNMPVV 687

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE 272
              +N+ +L +ED   ++ L         S     R T +       E   IF D   A +
Sbjct: 688  MVSNAHYLDKEDQIFYNALKVGEKRKTSSAHRYLRTTDEMI----EEAQRIFGDKEIAEK 743

Query: 273  NTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
              +      +  +++  P+  +    + ++ + E E   + KA            I    
Sbjct: 744  IVITNTNEIADQIEIIKPLSNKLHPPKIENAEVEIEELAKKKAYE----------IYGNP 793

Query: 333  HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTI 392
              +    RL+ EL  I +  ++  +LI    +Q + ++   VG  RGS   S+ A  L I
Sbjct: 794  LPEIVESRLNRELESIVKHGYAVLYLIAQKIVQKSLEDGYLVG-SRGSVGSSLVATMLGI 852

Query: 393  TDIDPLR-----------------------------------------FSLLFERFLNPD 411
            T+I+PL                                            + FE F+  +
Sbjct: 853  TEINPLPPHYICPSCKNVEFFDKEEIGSGYDLVDKKCEKCGAKMKKDGQDIPFETFMGFE 912

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
               +PD D++F  D ++   +Y++  +G + V +  T  ++  + A     +  +     
Sbjct: 913  GDKIPDIDLNFSGDYQNMAHKYIEKMFGEDHVFRAGTISTIADRTAFGFAKKYCEE---- 968

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                                                   ++ I + + G+ R    H  G
Sbjct: 969  -------------------------------QGIVKNSEIMRIVKAITGVKRTTGQHPGG 997

Query: 532  IVIGD--RPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            ++I      +    P+     D +S++  T F+   I    L+K D LG    T ++   
Sbjct: 998  LMIVPKEEEVYDYTPIQFPANDNKSNVQTTHFDYHVIHN-DLVKLDALGHDDPTFIKMMS 1056

Query: 587  DFLAQRGVKVDLSLIPFDDHET----------YHLLTTKGTLGIFQLESSGMRQALEGMQ 636
            D      + + +         +            L TT GTLG+ +  ++ +R  LE  +
Sbjct: 1057 DLTGVDPMTIPMDDKKTLSLFSSTKALKIDLKNELGTTVGTLGVPEFGTTFVRMMLEDTR 1116

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            P    +++ +  L                  K  I      +D ++     ++ Y     
Sbjct: 1117 PKSFSELVRISGLSHG-------TDVWAGIAKNWIDRKIATLDEVISCRDDIMNYL---- 1165

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
                L  G     A  +   + K    + +           +  + +   ++  ++    
Sbjct: 1166 ----LSKGAPPKSAFSIMEKVRKGKGIDEEDI-----ELMKELKVPEWFIISCQKI---- 1212

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------EKIKKFCQ 807
              Y F K+HAAAY  ++++ AW K HYP+ F +   T++ D           + IKK   
Sbjct: 1213 -KYLFPKAHAAAYVSMAFRIAWFKVHYPLAFYSTYFTVKGDEFNLKVIFSGRDAIKKRIF 1271

Query: 808  DARQFNIQIMPPSVNTP-----------------------CVDFKVGDNRIYYSLAAIKG 844
            + R  ++ +   +                              F +  N +      +  
Sbjct: 1272 ELRNMDLDVRKKNEMVVLELALEMMLRGYNFKMVDLNKSDSKKFLIDGNSLVVPFIKVPN 1331

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +G   A +I+++     F S+EDF ++      NR  +E+L   G L   
Sbjct: 1332 LGEKAAENIIKSRESG-FKSIEDFAAK---SGCNRTNVETLRELGVLKDL 1377



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 16/125 (12%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS  S +EG L +  I+  I      A+AITD+  + S  EF +KA A GI+PI 
Sbjct: 295 VELHLHSKLSAMEGLLDVGEIVKTIKNWGHKAVAITDSGVVQSIPEFYEKAVAVGIKPIF 354

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL---------VST---AEG---YQRLIELV 116
           G Q  +  +    ++   K    +    V+                  G    +  +++V
Sbjct: 355 GIQAYVVDEFVNIISLLTKDKKISETEFVVFDLETTGLEPAMNEIIEIGAVKIKN-MKIV 413

Query: 117 SRMYL 121
           S+ + 
Sbjct: 414 SKFHR 418


>gi|300173484|ref|YP_003772650.1| DNA polymerase III subunit alpha [Leuconostoc gasicomitatum LMG
            18811]
 gi|299887863|emb|CBL91831.1| DNA polymerase III, alpha subunit, Gram-positive type [Leuconostoc
            gasicomitatum LMG 18811]
          Length = 1437

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 142/930 (15%), Positives = 299/930 (32%), Gaps = 171/930 (18%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
              +    A ++      L    Q N  MT              LLV    G + L +LVS
Sbjct: 575  AWRLIKEANLR----YDLVRHEQLNDHMTEGDAWKHGRPVHATLLVQNDIGLKNLYKLVS 630

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
            +  + +   +  RI  S L +   EGLI+ TG +SG +           A K+   +   
Sbjct: 631  QSNI-NFFARVPRIPRSILDQY-REGLIIGTGDTSGDVIMTLIEKGRDEALKKAQYYD-- 686

Query: 178  FGDRLYVNLQRHRGYDRYRESQVVQ--------------LAYTHELPLVATNNSLFLSEE 223
                 Y+ +Q    Y+   ES+++               +    + P+V T +  + + E
Sbjct: 687  -----YIEIQPTANYEPMLESELIANTEKLHAILQEMVSIGDQLKKPVVVTGDVKYTNPE 741

Query: 224  DYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
            D    D+L+A       ++   P++          +   +  D   A +  ++     + 
Sbjct: 742  DKIYRDILIATQPGNPQNRTALPKLYFRTTQDLLDDYAFMGED--LAKKLIIDNTHVVAN 799

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            +L+  +P+                 +EL  + +A  +                 + R+D 
Sbjct: 800  MLETISPLKSGSYPPNIPSAG----DELTKRTLATAKKWYGDPV------PNVIQSRIDQ 849

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---- 399
            EL  I    F+ +++I    ++ + K+   VG  RGS   S  A    IT+++P      
Sbjct: 850  ELTAIIGNGFAPHYIIAQRLVEKSNKDGYLVG-SRGSVGSSFVATMSGITEVNPFAPHYR 908

Query: 400  --------------------------------------FSLLFERFLNPDRMSMPDFDID 421
                                                   ++ FE F+      +PD D++
Sbjct: 909  SAHGDYFELADPKIYESGYDLPDKADPNHPNEMLIGDGQNIPFETFMGFKGDKVPDIDLN 968

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F  D +     Y++  +G   V +  T  ++  K A   V +  +  + +  R  +    
Sbjct: 969  FSGDYQPIAHNYMKVLFGEHNVYRAGTIATVAEKTAFGYV-KGYERDHEKQYRGAE---- 1023

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPL 539
                                         +  ++Q + G+ R    H  GI+I      +
Sbjct: 1024 -----------------------------VERLAQGVTGVKRTTGQHPGGILIVPREYEV 1054

Query: 540  SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
                P+         +  +    ++   +   + L +  L     ++    +    +D  
Sbjct: 1055 YDFTPVQYPADDQKSL--WQTTHMDYHAIH-DNLLKMDILGHDDPTMVRTLKDMSGIDPQ 1111

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP +D     L T+   LG+   E     +      P+   + +  +         + +
Sbjct: 1112 SIPANDPGVLSLFTSPKALGV--TEEQIFSKTGTLGLPEFGTNFVRGMLEETQPHNYSEL 1169

Query: 660  VYNNRKNGKEKIVSIH-PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
            +  +  +    +   +   +      T G +I     +    +  G+  ++A  +   + 
Sbjct: 1170 LQISGLSHGTDVWLGNANELIENGTATIGTVIGTRDKIMTDLINWGFPAADAFNVMEKVR 1229

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K      D Q +            +      +        Y F ++HAAAY +++ + A+
Sbjct: 1230 KGKGITDDYQVQLR----------EAKIPEWYIQSMLKIKYMFPRAHAAAYVLMALRIAY 1279

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKK---------------------------------F 805
             K ++P+ + A   ++  D  + +                                    
Sbjct: 1280 FKVYFPMIYYATYFSVRADQFDIVAMSRGKNATKEALKRLRALGNDATVGDKNLLTVLEM 1339

Query: 806  CQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
              +A +  I      +      ++ +  + +    +A+  +G   A+ I+ A  DK F S
Sbjct: 1340 ANEALERGITFSMVDLYKSEANEWVIDGDTLIPPFSAVPSLGENVAKQIIVARQDKSFLS 1399

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             ED   R    K+++ V++ L     LD  
Sbjct: 1400 KEDLKKR---GKVSQTVIDYLTQNSVLDGM 1426



 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 28/72 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + LQVHS+ S ++       +        Q A+AI DT N+    E         ++ I 
Sbjct: 331 IELQVHSTMSSMDAVTDYAAVAKLAKNWGQEALAIIDTANVQGFPEAVAAGQKNDLKMIY 390

Query: 72  GCQLDIDMQDNL 83
           G + ++      
Sbjct: 391 GMEANLVEDGEP 402


>gi|167759386|ref|ZP_02431513.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704]
 gi|167662943|gb|EDS07073.1| hypothetical protein CLOSCI_01733 [Clostridium scindens ATCC 35704]
          Length = 1499

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 158/956 (16%), Positives = 293/956 (30%), Gaps = 191/956 (19%)

Query: 53   FSA-----LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
              A     ++F +      I        D+   +     N           +++L     
Sbjct: 610  AGATAEIFVKFVEMLKERNIN-------DLARLNQFGSNNADAIKKLPTYHVIILALNEV 662

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            G   L  L+S+ +L D   +  RI  S L +   EGL++ +   +G + +A     S+  
Sbjct: 663  GRVNLYTLISKSHL-DYYARRPRIPKSELSKY-REGLMVGSACEAGELYQAILNEKSEER 720

Query: 168  EKRLLTFKKLFGDRLYVNLQRHR-----------------GYDRYRESQVVQLAYTHELP 210
              R++ F        Y+ +Q                       +    ++V L      P
Sbjct: 721  IARIVNFYD------YLEIQPLGNNRFMIASDRIENVQSEEDLKKINKKIVDLGDRFNKP 774

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
            +V T +  F+  ED E +  ++        + +  P                        
Sbjct: 775  VVGTCDVHFMDPED-EVYRRIIMAGKGFGDADEQAPLYLRTTDEMLEEFEYLG------- 826

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
                 EI       +   A  +      +C  +  + +  LR            +     
Sbjct: 827  STKAKEIVIDNPCKIADMAEKITPVRPDKCPPVIPDSDKMLREICYNKAHSMYGE----- 881

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                    +RL+ ELN I    F+  ++I    +  + ++   VG  RGS   S  A   
Sbjct: 882  -ELPPIVTERLERELNSIISNGFAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFVATMA 939

Query: 391  TITDIDPLR---------------------------------------------FSLLFE 405
             IT+++PL                                              F + FE
Sbjct: 940  GITEVNPLSPHYYCKHCHYSDFESEEVRAFAGGCGWDMPDKNCPVCGEKLVKDGFDIPFE 999

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
             FL       PD D++F  D +    +Y +  +G  +  +  T G+L  K A   V    
Sbjct: 1000 TFLGFKGNKEPDIDLNFSGDYQSNAHKYTEVIFGAGQTYRAGTVGTLADKTAFGYVKNYY 1059

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
            +                                   R        +  I Q   G+ R  
Sbjct: 1060 E----------------------------------ERGQRKRNCEIDRIVQGCTGIRRST 1085

Query: 526  STHAAGIVIGD--RPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581
              H  GI++      ++   P+           VT           L+K D LG    T+
Sbjct: 1086 GQHPGGIIVLPLGEEINSFTPVQHPANDMTTDIVTTHFDYHSIDHNLLKLDILGHDDPTM 1145

Query: 582  LQKSLDF---------LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
            ++   ++           +   +   + IP DD     L      LGI   +  G     
Sbjct: 1146 IKTLEEYISSPALENEYNESDNRFVATKIPLDDKGVMSLFHDTSALGIKPDDIGGCPVGC 1205

Query: 633  EGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQ 692
             G+     + ++ +V   +P  + +++  +   +G +  ++    +    K T    I  
Sbjct: 1206 LGIPEFGTDFVVQMVVDTQPKTLSDLIRISGLSHGTDVWLNNAQELIKSGKATISTAICT 1265

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
               +    +  G     +  +   + K      D     F     + G+      +    
Sbjct: 1266 RDDIMTYLINKGMDSELSFTIMEKVRKGKGLTDD-----FEKSMKEAGVPDWYIWSC--- 1317

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM-------------------- 792
              K   Y F K+HAAAY +++Y+ A+ K +YP+ +  A                      
Sbjct: 1318 --KQIKYMFPKAHAAAYVMMAYRIAYCKINYPLAYYGAYFGIRADAFSYEIMCRGKDVLQ 1375

Query: 793  -------------TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYS 838
                         + +  +  K  K  Q+      + MP  +       F + D ++   
Sbjct: 1376 HYIDEYNSRSATLSKKEQDTMKDMKIVQEMYARGYEFMPMDIYKAQATKFLIIDGKLMPP 1435

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            L++I G+G   A  + EAS D P+ S +DF  R    K ++ V++ +V  G L   
Sbjct: 1436 LSSIDGMGEKAAEAVAEASKDGPYLSRDDFRQRT---KASKSVIDYMVELGILSDL 1488



 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 4/90 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--SQKACAAG--I 67
           V L  H+  S ++G   + +++ +       AIAITD   + +  +     +        
Sbjct: 373 VELHCHTKMSDMDGVSEVKDLVKRAHDWGHKAIAITDHGVVQAFPDANHYIETLDKDDPF 432

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           + I G +  +          +       V 
Sbjct: 433 KVIYGVEGYLVDDLTDVALGEKGQTLDDVY 462


>gi|281492785|ref|YP_003354765.1| DNA polymerase III subunit alpha [Lactococcus lactis subsp. lactis
            KF147]
 gi|281376437|gb|ADA65923.1| DNA polymerase III, alpha subunit [Lactococcus lactis subsp. lactis
            KF147]
          Length = 1638

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 143/930 (15%), Positives = 294/930 (31%), Gaps = 186/930 (20%)

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            +++ D L   +  K   P    + L   T EG + L ++VS   +        R+  S L
Sbjct: 770  LELNDKLVSEDSYKKVRPK--HVTLYAKTQEGLKNLFKIVSFGNVK-YYAGLPRVPRSVL 826

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYVNLQRHRG--- 191
             E   EGL++ +    G +  A    + +   +    +   ++F   LY +L        
Sbjct: 827  -EANREGLLVGSACEIGEVFDAAINKTFEETLEIAKFYDFIEVFPPALYRSLVVGGSFKS 885

Query: 192  --YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV---------AHSTVV 240
                      ++++  T + P++AT N  +L+ ED    ++++                 
Sbjct: 886  EKELEQTLKDLIKIGKTLDKPVLATGNLHYLNPEDAIYREIIVRSLGLGAEINWTQGHGE 945

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK-E 299
              K  P         +       F D   A E  ++  ++ +    V  P+         
Sbjct: 946  HAKPLPLPEAHFRTTDEMLEAFSFLDEKTAREIVIDNTQKLADEFDVLTPVRDDLYTPKM 1005

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              D  +  E  +                            RL+ EL  I    FS  ++I
Sbjct: 1006 VFDGGETSEERIVRLTYEKAHEWYGNPL------PDIIDARLEKELRSILGNGFSVVYII 1059

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------- 399
              + ++ +      VG  RGS   S+ A  + IT+++PL                     
Sbjct: 1060 SQELVKRSNDRGYIVG-SRGSVGSSLVATMIGITEVNPLAPHYRCPECQYFECYDDGSFG 1118

Query: 400  ---------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
                                   + FE FL      +PD D++F  D +      V++ +
Sbjct: 1119 SGYDMPDKNCPKCDHKLIKDGHDIPFETFLGFKGDKVPDIDLNFSGDDQPLAHLDVRDIF 1178

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G +   +  T G++  K A   V +  +  Y Q     +                     
Sbjct: 1179 GEDYAFRAGTIGTVAEKTAFGFV-KGYERDYDQFYGNAE--------------------- 1216

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DL 553
                        +  ++    G+ R    H  GI+       +    P+         + 
Sbjct: 1217 ------------IDRLAAGSTGVKRTTGQHPGGIIVIPNYMDVYDFSPVQFPADDVNAEW 1264

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT 613
              T F+   I    ++K D LG    T+++K      Q    +    IP DD     L T
Sbjct: 1265 QTTHFDFHAIHD-NILKLDILGHDDPTMIRK-----LQSLSGIVPQDIPMDDPGVMKLFT 1318

Query: 614  TKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
                             TLGI ++ +      +   +P    D++ +  L          
Sbjct: 1319 GTESLGLTEEQLGVKLGTLGIPEMGTFTSMNMIAEAKPKNFADLLQISGLSHG------- 1371

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                  N ++ I S    +  ++     +++Y         +  G     A  +   + K
Sbjct: 1372 TDVWSGNAQDLIRSGIADLSSVIGCRDDIMVYL--------IHKGLENGLAFTIMERVRK 1423

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
                +   +++E+++    ++ + +    +  ++      Y F K+HAAAY +++ + A+
Sbjct: 1424 GMWNKIPAEEREKYVEAMREHDVPEWYIESCSKI-----KYMFPKAHAAAYIMMALRVAY 1478

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKK---------------------------------F 805
             K H+P+ +  A  ++     +                                      
Sbjct: 1479 FKVHHPILYYCAWFSIRATAFDIGVMGAGLEAVKAKMKEIKDKGFDATNVETNLYTTLEL 1538

Query: 806  CQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
            C +  +         +      +F +  + +      + G+G   A+ I+ A A+  F S
Sbjct: 1539 CNEMLERGFTFGKIDLYHSEATEFVIDGDTLIPPFVTMDGLGENVAKQIVAARAEGEFLS 1598

Query: 865  LEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
              +   R     +++ ++E++   G L+  
Sbjct: 1599 KMELRKR---GGVSQTIIENMTNMGVLEGM 1625



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   S ++++ + A     AIAITD   L S  E        G++ I 
Sbjct: 510 VEFHAHTNMSQMDAIPSASSLVAQAAKWGHKAIAITDHGGLQSFPEAHSAGKKNGVKIIY 569

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       + N+          +V 
Sbjct: 570 GVEANLVEDKIPIVYNETDVDMYESTYVVF 599


>gi|296110428|ref|YP_003620809.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Leuconostoc
            kimchii IMSNU 11154]
 gi|295831959|gb|ADG39840.1| DNA-directed DNA polymerase III, alpha chain PolC-type [Leuconostoc
            kimchii IMSNU 11154]
          Length = 1437

 Score =  196 bits (498), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 151/915 (16%), Positives = 304/915 (33%), Gaps = 169/915 (18%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +L    Q N  MT+             LLV  A G + L +LVSR  + D   +  RI  
Sbjct: 587  ELTRHNQLNDYMTDGDAWKHGRPVHATLLVQNAVGLKNLYKLVSRSNI-DFFARVPRIPR 645

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
            S L +   EGLI+ TG +SG +         + A K+   +        Y+ +Q    Y 
Sbjct: 646  SILNQY-REGLIIGTGDTSGDVIMTLIEKGREEALKKAKYYD-------YIEIQPTANYA 697

Query: 194  RYRESQVVQ--------------LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
               ES++V               +  T + P+V T +  + + ED    D+L+A      
Sbjct: 698  PMIESELVANETKLHDILKEMVSIGETLDKPVVVTGDVKYTNPEDKIYRDILIATQPGNP 757

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             ++   P +         ++   + +D   A +  ++     + +L+   P+        
Sbjct: 758  QNRTALPELYFRTTQALLTDFSFMGND--VAKKIVIDNTHIVADMLEAITPLKSGSYPPN 815

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                     +EL ++ +A  +                 + R+D EL  I    F+ +++I
Sbjct: 816  IPSAG----DELTSRTLATAKKWYGDPL------PSVIQSRIDQELQAIIGNGFAPHYMI 865

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------- 399
                ++ + K+   VG  RGS   S  A    IT+++P                      
Sbjct: 866  SQRLVEKSNKDGYLVG-SRGSVGSSFVATMSGITEVNPFAPHYRSAHGDYFELADPKIYE 924

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                   ++ FE F+      +PD D++F  D +     Y++  
Sbjct: 925  SGYDLPDKADPNHPGEMLIGDGQNIPFETFMGFKGDKVPDIDLNFSGDYQPIAHNYMKVL 984

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G   V +  T  ++  K A   V +  +  + +  R  +                    
Sbjct: 985  FGEHNVYRAGTIATVAEKTAFGYV-KGYERDHEKQYRGAE-------------------- 1023

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRSDLPV 555
                         +  ++Q + G+ R    H  GI+I      +    P+         +
Sbjct: 1024 -------------VERLAQGVTGVKRTTGQHPGGILIVPREYEVYDFTPVQYPADDQKSL 1070

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
              +    ++   +   + L +  L     ++    +    +D   IP +D     L T+ 
Sbjct: 1071 --WQTTHMDYHAIH-DNLLKMDILGHDDPTMVRTLKDMSGIDPQSIPANDPGVLSLFTSP 1127

Query: 616  GTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              LG+   Q+ S      L       +  ++      +P     ++  +   +G +  + 
Sbjct: 1128 KALGVTEDQIFSKTGTLGLPEFGTSFVRGMLEET---QPHTYSELLQISGLSHGTDVWLG 1184

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +      T G +I     +    +  G+  ++A  +   + K           + I
Sbjct: 1185 NANELIENGTATIGTVIGTRDKIMTDLINWGFPAADAFNVMEKVRKG----------KGI 1234

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            + A +  + +      +        Y F ++HAAAY +++ + A+ K ++P  + A   +
Sbjct: 1235 TDAYQAQLREAKIPEWYIQSMLKIKYMFPRAHAAAYVLMALRIAYFKVYFPTIYYATYFS 1294

Query: 794  LEMDNVEKIKK---------------------------------FCQDARQFNIQIMPPS 820
            +  D  + +                                      +A +  I      
Sbjct: 1295 VRADQFDIVAMSRGKNATKEAMKKIRTLGNDATVGDKNLLTVLEMANEALERGITFSMVD 1354

Query: 821  VNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
            +      ++ +    +    +A+  +G   A+ I+ A  DKPF S ED   R    K+++
Sbjct: 1355 LYKSEASEWVIDGETLIPPFSAVPSLGDNVAKQIIVARQDKPFLSKEDLKKR---GKVSQ 1411

Query: 880  RVLESLVFAGALDCF 894
             V+E L     LD  
Sbjct: 1412 TVIEYLSRNSVLDGM 1426



 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 29/72 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L VHS+ S ++   +   +     +  Q A+A+ DT N+    E         ++ I 
Sbjct: 331 IELHVHSTMSTMDAVTNYAAVAQLAKSWGQEALAVVDTANVQGFPEAVAAGAKNDLKMIY 390

Query: 72  GCQLDIDMQDNL 83
           G + ++      
Sbjct: 391 GMEANLVEDGEP 402


>gi|326407708|gb|ADZ64779.1| DNA polymerase III subunit alpha, Gram-positive type [Lactococcus
            lactis subsp. lactis CV56]
          Length = 1638

 Score =  196 bits (498), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 142/921 (15%), Positives = 291/921 (31%), Gaps = 186/921 (20%)

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            +++ D L   +  K   P    + L   T EG + L ++VS   +        R+  S L
Sbjct: 770  LELNDKLVSEDSYKKVRPK--HVTLYAKTQEGLKNLFKIVSFGNVK-YYAGLPRVPRSVL 826

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYVNLQRHRG--- 191
             E   EGL++ +    G +  A    + +   +    +   ++F   LY +L        
Sbjct: 827  -EANREGLLVGSACEIGEVFDAAINKTFEETLEIAKFYDFIEVFPPALYRSLVVGGSFKS 885

Query: 192  --YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV---------AHSTVV 240
                      ++++  T   P++AT N  +L+ ED    ++++                 
Sbjct: 886  EKELEQTLKDLIKIGKTLGKPVLATGNLHYLNPEDAIYREIIVRSLGLGAEINWTQGHGE 945

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK-E 299
              K  P         +       F D   A E  ++  ++ +    V  P+         
Sbjct: 946  HAKPLPLPEAHFRTTDEMLEAFSFLDEKTAREIVIDNTQKLADEFDVLTPVRDDLYTPKM 1005

Query: 300  CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
              D  +  E  +                            RL+ EL  I    FS  ++I
Sbjct: 1006 VFDGGETSEERIVRLTYEKAHEWYGNPL------PDIIDARLEKELRSILGNGFSVVYII 1059

Query: 360  VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------- 399
              + ++ +      VG  RGS   S+ A  + IT+++PL                     
Sbjct: 1060 SQELVKRSNDRGYIVG-SRGSVGSSLVATMIGITEVNPLAPHYRCPECQYFECYDDGSFG 1118

Query: 400  ---------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKY 438
                                   + FE FL      +PD D++F  D +      V++ +
Sbjct: 1119 SGYDMPDKNCPKCDHKLIKDGHDIPFETFLGFKGDKVPDIDLNFSGDDQPLAHLDVRDIF 1178

Query: 439  GHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRF 498
            G +   +  T G++  K A   V +  +  Y Q     +                     
Sbjct: 1179 GEDYAFRAGTIGTVAEKTAFGFV-KGYERDYDQFYGNAE--------------------- 1216

Query: 499  REARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DL 553
                        +  ++    G+ R    H  GI+       +    P+         + 
Sbjct: 1217 ------------IDRLAAGSTGVKRTTGQHPGGIIVIPNYMDVYDFSPVQFPADDVNAEW 1264

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT 613
              T F+   I    ++K D LG    T+++K      Q    +    IP DD     L T
Sbjct: 1265 QTTHFDFHAIHD-NILKLDILGHDDPTMIRK-----LQSLSGIVPQDIPMDDPGVMKLFT 1318

Query: 614  TKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
                             TLGI ++ +      +   +P    D++ +  L          
Sbjct: 1319 GTESLGLTEEQLGVKLGTLGIPEMGTFTSMNMIAEAKPKNFADLLQISGLSHG------- 1371

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
                  N ++ I S    +  ++     +++Y         +  G     A  +   + K
Sbjct: 1372 TDVWSGNAQDLIRSGIADLSSVIGCRDDIMVYL--------IHKGLENGLAFTIMERVRK 1423

Query: 720  -KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
                +   +++E+++    ++ + +    +  ++      Y F K+HAAAY +++ + A+
Sbjct: 1424 GMWNKIPAEEREKYVEAMREHDVPEWYIESCSKI-----KYMFPKAHAAAYIMMALRVAY 1478

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKK---------------------------------F 805
             K H+P+ +  A  ++     +                                      
Sbjct: 1479 FKVHHPILYYCAWFSIRATAFDIGVMGAGLEAVKAKMKEIKDKGFDATNVETNLYTTLEL 1538

Query: 806  CQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
            C +  + N       +      +F +  + +      + G+G   A+ I+ A A+  F S
Sbjct: 1539 CNEMLERNFTFGKIDLYRSEATEFVIDGDTLIPPFVTMDGLGENVAKQIVAARAEGEFLS 1598

Query: 865  LEDFCSRVDSKKLNRRVLESL 885
              +   R     +++ ++E++
Sbjct: 1599 KMELRKR---GGVSQTIIENM 1616



 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   S ++++ + A     AIAITD   L S  E        G++ I 
Sbjct: 510 VEFHAHTNMSQMDAIPSASSLVAQAAKWGHKAIAITDHGGLQSFPEAHSAGKKNGVKIIY 569

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       + N+          +V 
Sbjct: 570 GVEANLVEDKIPIVYNETDVDMYESTYVVF 599


>gi|261407941|ref|YP_003244182.1| DNA polymerase III subunit alpha [Paenibacillus sp. Y412MC10]
 gi|261284404|gb|ACX66375.1| DNA polymerase III, alpha subunit [Paenibacillus sp. Y412MC10]
          Length = 1438

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 160/909 (17%), Positives = 299/909 (32%), Gaps = 160/909 (17%)

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            + M D L                 +      G + L +LVS  +  +  K+   I  S L
Sbjct: 590  VKMLDRLNDYVGMDLSNTRPFHCGIYALNMTGKKNLYKLVSMSHT-EYFKRVPCIPKSKL 648

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLYVNLQR---HRG 191
            QE+  +GL++L+G   G         + + AE+    +   ++    +Y++L        
Sbjct: 649  QEM-RDGLLVLSGCEKGEFFETVLNKTEEEAEEIAGFYDVLEIQPLTMYMHLVDKGLVGS 707

Query: 192  YDRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
             +  +   S+VV++      P++AT N  +L   D    D+ +         +  R    
Sbjct: 708  PEEIKTAISKVVRIGEKLNKPVIATGNVHYLEPRDKLFRDITIHGITGFSPLKDMR---- 763

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                   R+    +        +   E+    +  L      L  F +K    I +  + 
Sbjct: 764  -KPDAHFRTTEEMLQEFEFLGQDKCYEVVVTNTSELADRFEDLELFPDKLFTPILEGADE 822

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            E+RN      +    +         +    RL+ EL  I R  FS  +LI    ++ + +
Sbjct: 823  EIRNTCYDTAKSIYGENL------PEVVVARLEKELEPIIRYGFSANYLISEKLVKKSNR 876

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLRFS---------------------------- 401
            +   VG  RGS   SV A  L I++++PL                               
Sbjct: 877  DGYLVG-SRGSVGSSVVATFLGISEVNPLPAHYICLNSDCKHSEWFLDGSVPSGFDLPDK 935

Query: 402  ---------------LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL      +PD D++F  + +     + +  +G + V + 
Sbjct: 936  ACPECGNMMKGEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPHAHNFTKEMFGEKNVFRA 995

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A     +  +                                        
Sbjct: 996  GTIGTVAEKTAFGFAKKYEEHN----------------------------------NKRW 1021

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMYRDVRS---DLPVTQFNMK 561
                L  ++    G+ R    H  GIV+    +   ++ P+         +   T F+  
Sbjct: 1022 RGAELNRLASGCTGVKRSTGQHPGGIVVVPDYIEVEEITPVQYPADDVNAEWKTTHFDYH 1081

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
              E   L+K D LG    T+++     + Q    VD + IP +D +   +  +   LG+ 
Sbjct: 1082 AFEA-NLLKLDILGHDDPTMMR-----MLQDLTGVDPTTIPMNDPKVMSMFNSTEALGVK 1135

Query: 622  --QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
              Q+ S      +  M    +  +  LV        D + +          + +   LI 
Sbjct: 1136 PEQIRSPVATFGVPEMGTKFVRQM--LVESQPSSFADLLQISGLSHGTGVWLGNAQELIK 1193

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
                  + VI  ++ +M      +G   S A  +  ++ K      +     +I    K 
Sbjct: 1194 NGTCNIKTVIGCRDDIMLFLIYKAGMDASLAFKITESVRKGRGLSQE-----WIDEMKKC 1248

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL----- 794
             + +    +  ++      Y F K+HAAAY + + +TA+ K +YP+E+ A   ++     
Sbjct: 1249 KVPQWYIDSCLKI-----QYMFPKAHAAAYVISAVRTAYFKLYYPIEYYATYFSVRAEDF 1303

Query: 795  ----EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCV------------------------ 826
                     E I +  ++  Q      P       +                        
Sbjct: 1304 DIELCCQGYEAIYRRIEEIEQLGFGASPKEKGMLPILEMALEMTARGFSFKNIDLYQSDA 1363

Query: 827  -DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
              FKV  + +    +A+ G+G   AR+I  A     F S+EDF  +    K ++  +E L
Sbjct: 1364 LRFKVDGDSLIPPFSALAGIGDNAARNIAAAREFGEFLSIEDFQQK---SKASKTAVELL 1420

Query: 886  VFAGALDCF 894
               G     
Sbjct: 1421 TQMGCFRGL 1429



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++    ++  +   AA    AIA++D   +    + ++ A   GI+ + 
Sbjct: 335 VEFHLHTTMSTMDAVTPIDRYIKTAAAWGHKAIAVSDHGGVQCYPDAAKNAKKHGIKMMY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       +         +   +V 
Sbjct: 395 GIEANVVNDAVNIVEQAQPIELSSATYVVF 424


>gi|256851261|ref|ZP_05556650.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 27-2-CHN]
 gi|260660685|ref|ZP_05861600.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 115-3-CHN]
 gi|282934729|ref|ZP_06339972.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 208-1]
 gi|297206128|ref|ZP_06923523.1| DNA polymerase III PolC [Lactobacillus jensenii JV-V16]
 gi|256616323|gb|EEU21511.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 27-2-CHN]
 gi|260548407|gb|EEX24382.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 115-3-CHN]
 gi|281301304|gb|EFA93605.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            jensenii 208-1]
 gi|297149254|gb|EFH29552.1| DNA polymerase III PolC [Lactobacillus jensenii JV-V16]
          Length = 1439

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 145/871 (16%), Positives = 283/871 (32%), Gaps = 171/871 (19%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + +L  T +G + + +LVS         +  R  +S L++   EGL+  +G   G +  
Sbjct: 614  HMTVLALTQKGLKNMYKLVSLASTQ-YFYREPRTPISELRKY-REGLLFGSGCWKGDVFI 671

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQ--------------L 203
                     A ++   +        ++ +Q    Y +    ++++              L
Sbjct: 672  TMMQKGYDEAREKAKFYD-------FLEVQPPAAYSQLIADELIKDENQLEEILKNIYKL 724

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                 +P+VAT +  +L+ ED    ++L+A   S     K +P++      +       +
Sbjct: 725  GQELNIPVVATGDCHYLNPEDKIYREILIAAQRSNPNRNKPQPKLHFYSTQEMLDAFSFM 784

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
              D+  A E  ++   + +  ++  AP+          D  ++  +   NKA        
Sbjct: 785  GEDI--AKEIVIDNTNKIADEIEDIAPVKSGLYPPHIKDADQQMTDLTYNKAYE------ 836

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                +      +  + R++ ELN I    ++  +LI    +  + K+   VG  RGS   
Sbjct: 837  ----LYGKPLPKIVKDRIELELNSIISNGYAVIYLISQKLVAKSNKDGYLVG-SRGSVGS 891

Query: 384  SVTAYALTITDIDPLR-----------------------------------------FSL 402
            S+ A    IT+++PL                                            +
Sbjct: 892  SLVATMSGITEVNPLAPHYRCPKCKYSHFFENGEYGSGFDLPDKKCPECGTELVKDGQDI 951

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             F  FL      +PD D++F  D +     Y++  +G     +  T  ++  K A     
Sbjct: 952  PFATFLGFHGDKVPDIDLNFSGDYQPVAHNYIRVMFGPANSFRAGTISTVADKTAYGYA- 1010

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
                                               F E R  +     L  ++    G+ 
Sbjct: 1011 ---------------------------------KHFEEERNLNLRSAELDRLATGTSGVK 1037

Query: 523  RHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R    H AGIV+      +    P+             T F+   I    ++KFD LG  
Sbjct: 1038 RTTGQHPAGIVVVPDDMDIYDFTPVQYPADDLNAAWLTTHFDFHSIHD-NILKFDILGHD 1096

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGM 635
              T+++     + Q    VD   IP DD     L +    LG+   Q+ S      +   
Sbjct: 1097 DPTMIR-----MLQDLSGVDPMTIPPDDPGVMSLFSGTDILGVTPEQIASKTGTLGVPEF 1151

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
                +  ++           + + +          + +   L++    + + VI  ++ +
Sbjct: 1152 GTKFVRGMLEE--TNPTTFSELLQISGLSHGTDVWLGNAEDLVNNGTCKLKNVIGCRDNI 1209

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            M    +  G     A     ++        D       +    +    +           
Sbjct: 1210 MM-DLIHWGVKPEVAFSTMESVRHGRGISDDDMAVLKKNNNIPDWYIPSCLKI------- 1261

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------- 804
               Y F K+HA AY +++ + AW K +YPV +  +  ++  D  + +             
Sbjct: 1262 --KYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYFSVRADLFDLVAMSHGKNSVKAAI 1319

Query: 805  ----------------------FCQDARQFNIQIMPPSVNTPCV-DFKV-GDNRIYYSLA 840
                                     +  +  I+I    VN     +FK+  D+ I     
Sbjct: 1320 KKIQDQGNDASAKDKSLLTVLEIANECLERGIKIKMVDVNESEALNFKIIDDHTILAPFN 1379

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            A+ G+G   A+ I+ A A++ F S ED  +R
Sbjct: 1380 AVPGLGDNAAKQIVAARAEQKFLSKEDLRTR 1410



 Score = 71.4 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S L+   +  + +       Q AIAITD  ++ S  E         ++ + 
Sbjct: 336 VELHLHTIMSQLDATNTATDFISTAKKFGQKAIAITDHGDVQSFPEAYSAGKKQEMKILY 395

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 396 GLEANMVDDHALLVLNPAPMTYENREFVIF 425


>gi|207108969|ref|ZP_03243131.1| DNA polymerase III subunit alpha [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 256

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 113/256 (44%), Positives = 162/256 (63%), Gaps = 9/256 (3%)

Query: 666 NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
           +G E I      ++P+LK T G I+YQEQVMQI Q + G+SL EAD++RRAMGKK  + M
Sbjct: 1   HGIEPIAYAFKELEPILKPTYGTIVYQEQVMQIVQTIGGFSLGEADLIRRAMGKKDAQIM 60

Query: 726 DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
              K +F+ GA   G     A N+++L+ KFA YGFNKSH+AAYA+I++QTA++KT+Y  
Sbjct: 61  ADNKAKFVEGAKNLGHDGQKAANLWDLIVKFAGYGFNKSHSAAYAMITFQTAYLKTYYKH 120

Query: 786 EFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD---------NRIY 836
           EF+AA +T E + +E + ++  + R   I++MPP +N+   DF V +          +I 
Sbjct: 121 EFMAAMLTSESNKIESVARYIDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELEKKIV 180

Query: 837 YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
           + L AIKGVG    ++I+E  A   + SLEDF SRVD  KL ++ LE LV +G+LD  GY
Sbjct: 181 FGLGAIKGVGGEPIKNIIEERAKGDYKSLEDFISRVDFSKLTKKSLEPLVKSGSLDNLGY 240

Query: 897 SRMQLLQSLDNIQKYA 912
           +R  +L +LD I    
Sbjct: 241 TRKTMLANLDLICDAG 256


>gi|218283081|ref|ZP_03489176.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989]
 gi|218216150|gb|EEC89688.1| hypothetical protein EUBIFOR_01762 [Eubacterium biforme DSM 3989]
          Length = 1446

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 133/948 (14%), Positives = 295/948 (31%), Gaps = 211/948 (22%)

Query: 72   GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-----LDQGK 126
            GC+         K +++          + +     +G + L EL++  +      + +  
Sbjct: 578  GCE---------KYSSKKPYERNRPYHMTVFAKNKDGLKELFELITLSHTQYLVSMGKEN 628

Query: 127  QSVRICLSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
               RI    + ++     L++ +   +G I       S +   + +  +        Y+ 
Sbjct: 629  GQPRIIKEEISKKWDNGNLLIGSSCQNGEIFELAHTRSKKELFEAMAYYD-------YIE 681

Query: 186  LQ----------RHRGYDRYRESQVVQL----AYTHELPLVATNNSLFLSEEDYEAHDVL 231
            LQ          R    D       +Q     A      ++A++++ +++  +    DV 
Sbjct: 682  LQPLDCYKNMLDRGSITDVEDLKWYLQFIYDTAKEAGKMVIASSDAHYVNPNEKRLRDVY 741

Query: 232  MAV------AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
            +         H   +  K   + T +      +    + +      +   E+    +  L
Sbjct: 742  INAKAIGNARHPLYIYNKQARKATSNPNQHLLTTDEMLKAFEWMGEDVAYEVVVENTNKL 801

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            ++    +    +K      +  + +LR+           +             +RL  EL
Sbjct: 802  KLLTEPIFPIKDKLYPPDIEGSDQKLRDICFETAHQWYGKDL------PDIVEKRLTREL 855

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------ 399
            + I    +   + I    ++ +  +   VG  RGS   S  A    IT+++PL       
Sbjct: 856  DSIIGHGYYVVYYISHLLVKKSNDDGYLVG-SRGSVGSSFVATMSNITEVNPLTPHYVCK 914

Query: 400  -----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQ 424
                                                 + FE FL  +   +PD D++F  
Sbjct: 915  NCQHYEFLDGDEAKSGFDLPDKVCPVCGEIMRGDGQDIPFETFLGFEGDKVPDIDLNFSG 974

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + +     Y +  +G + V +  T G++Q K A   V    +    +     K +     
Sbjct: 975  EYQPNAHAYTKEVFGDDHVFRAGTVGTVQEKTAYGYVKGYEEEMECEPFNEAKRVD---- 1030

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QL 542
                                         +++  EG+ R    H  GIV+    +     
Sbjct: 1031 -----------------------------LAKGCEGVKRTTGQHPGGIVVVPLDMDVHDF 1061

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
             P+      + P   +     +   +   + L    L  +  +   + +R   V++  IP
Sbjct: 1062 TPVQYPA--NNPNATWKTTHFDFHQIH-DNILKFDILGHVDPTAMKMLERITGVNVRQIP 1118

Query: 603  FDDHETYHLLTTKGT--------------LGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             +D  T  + +T  +               GI +  +  +R  LE  +P    +++ +  
Sbjct: 1119 MNDQATMAIFSTTESLKIDTTKYNEVTGAAGIPEFGTPFVRGILELTKPTTFAELVTISG 1178

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            L                N K+ I +    ++ ++     +++          +  G    
Sbjct: 1179 LSHG-------TDVWLGNAKDLIDNGTCKLNEVIGCRDDIMV--------DLMGYGVKPK 1223

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             +  +  ++ K    + +     +++    N + +    +  ++      Y F K+HA A
Sbjct: 1224 LSFTIMESVRKGKGLKDE-----WVTEMKANNVPEWFIDSCTKI-----KYMFPKAHAVA 1273

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA-----------RQFNIQIM 817
            Y +++ + AW K H PV +     ++  D  +       +A            + +    
Sbjct: 1274 YVMMAVRIAWFKVHMPVHYYCMYFSIRCDAYDVQTMIQGEAAIRQRMADIKHMKEDKTQK 1333

Query: 818  PPSVNTPCVD---------------------------FKVGDN---RIYYSLAAIKGVGT 847
            P        D                           F V  +    I     +I G+G+
Sbjct: 1334 PSDKELAIYDTLELALEMVLRGFRFSNISINRSAATEFIVDPDDPKAIIPPFTSIDGLGS 1393

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                 +++A  +KPF S ED   R    +L++ ++E L    AL+   
Sbjct: 1394 NVGLSVVKAREEKPFLSKEDVLKRT---QLSKTLVEKLAEMNALEGLD 1438



 Score = 58.3 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/94 (11%), Positives = 31/94 (32%), Gaps = 7/94 (7%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF---SQKACAAG----I 67
            VHS++S ++G  ++   + +       +I + D   + +        +           
Sbjct: 307 HVHSNFSEMDGVCAIEEFIQQAYDWGMDSIGVCDHQVVQAFPMAQHKIEALSKKNPNREF 366

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           + + GC++ +       + N           +V 
Sbjct: 367 KMLYGCEMLVADSKYHIVYNNDHRRLEDATFVVF 400


>gi|255520144|ref|ZP_05387381.1| DNA polymerase III (alpha subunit) DnaE [Listeria monocytogenes FSL
            J1-175]
          Length = 329

 Score =  195 bits (495), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 65/220 (29%), Positives = 106/220 (48%), Gaps = 7/220 (3%)

Query: 816  IMPPSVNTPCVDFKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
            ++ PS+N     F+V +   I YS   I+ V T     I+      PF    DFC R+  
Sbjct: 1    MLAPSINHSNYYFQVENESSIRYSFRVIRKVPTKFILEIINERKKAPFRDFFDFCERMPH 60

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF 934
            K L+  VLE+LVF+G  D FG  R  +L ++D + +Y   + ++  +K  N+FA +    
Sbjct: 61   KMLSETVLEALVFSGCFDEFGEDRATILATIDAVLQYISLLGED--SKGMNLFAEDDDFL 118

Query: 935  SD-KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGN 993
               K    K +  +   + E E+   G Y S HP+  Y+  L+ + I       +   G 
Sbjct: 119  KKMKPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLANLSS---GK 175

Query: 994  NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 176  NYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 215


>gi|149183493|ref|ZP_01861922.1| DNA polymerase III PolC [Bacillus sp. SG-1]
 gi|148848805|gb|EDL63026.1| DNA polymerase III PolC [Bacillus sp. SG-1]
          Length = 1375

 Score =  195 bits (495), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 138/810 (17%), Positives = 271/810 (33%), Gaps = 148/810 (18%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
             L+  + A   GI       +    Q N  M             + LL  T EG + L +
Sbjct: 581  LLKMLKDANEKGI-------IY-HDQFNDYMGKGDAYKRSRPSHVTLLAQTEEGLKNLFK 632

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LV+  +L +   +  RI  S LQ+  + G+++ +G   G +       + +  E+    +
Sbjct: 633  LVTISHL-EYFFRVPRIPRSLLQKYRS-GILVGSGCDKGEVFEGMMQKAPEEVEEAARFY 690

Query: 175  K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
               ++    +Y     + L +           +VQL    +LP+VAT N  +++  D + 
Sbjct: 691  DYLEVHPKEVYQHLIELELIQSDQNLEEIIGNIVQLGEKLDLPVVATGNVHYINPTD-KV 749

Query: 228  HDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
            H  ++  +                    N       F    +A E  V    + + ++  
Sbjct: 750  HREILVGSQGGANPLNRHKLPDVHFRTTNEMLDCFSFLGKEKAKEIVVTNTNKIADLIDE 809

Query: 288  HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
              PI       + +      + E+R  + A  +    +         +    RL+ EL  
Sbjct: 810  IKPIKDDLYTPKIEG----ADEEMRRMSYAMAKSIYGE------ELPEIVEARLEKELKS 859

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------- 399
            I    F+  +LI A  ++ +  +   VG  RGS   S  A    IT+++PL         
Sbjct: 860  IIGHGFAVIYLISAKLVKKSLSDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYVCPKC 918

Query: 400  ---------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDR 426
                                               + FE FL      +PD D++F  + 
Sbjct: 919  KHSEFFDDGSVGSGFDLPNKNCPECGNVFKKDGHDIPFETFLGFKGDKVPDIDLNFSGEY 978

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            + +   Y +  +G + V +  T G++  K A   V +      +   R  +         
Sbjct: 979  QPKAHDYTKVLFGEDNVYRAGTIGTVADKTAFGYV-KGYASDNNLQIRGAE--------- 1028

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVP 544
                                    +  ++Q   G+ R    H  GI  V     +    P
Sbjct: 1029 ------------------------VDRLAQGCTGVKRTTGQHPGGIIVVPDYMDIFDFSP 1064

Query: 545  MYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            +         +   T F+   I    L+K D LG    T+++   D          +   
Sbjct: 1065 IQFPADDKNSEWKTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSG--IDPKTIPTD 1121

Query: 602  PFDDHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
              +  + +            ++   GTLGI +  +  +RQ LE  +P    +++ +  L 
Sbjct: 1122 DPEVMKIFSGTESLGVTEEQIMCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLS 1181

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
                           N +E I +    +  ++     +++Y         +  G   S A
Sbjct: 1182 HG-------TDVWLGNAQELIHNNICNLSEVIGCRDDIMVYL--------IYQGLEPSLA 1226

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
              +   + K    + +     +     KNG+      +  ++      Y F K+HAAAY 
Sbjct: 1227 FKIMEFVRKGKGLQPE-----WEEEMMKNGVPNWYIDSCKKI-----KYMFPKAHAAAYV 1276

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            +++ + A+ K H+ + + +A  T+  ++ +
Sbjct: 1277 LMAVRIAYFKVHHALLYYSAYFTVRAEDFD 1306



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++   S+ N++ + +     A+AITD   + S  E    +   GI+ + 
Sbjct: 339 VELHLHTPMSQMDAVSSVANLVGQASKWGHKAVAITDHAVVQSFPEAYNASKKNGIKILY 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           +V 
Sbjct: 399 GLEANLVDDGIPIAYNDAHRNLEEDTYVVF 428


>gi|257487765|ref|ZP_05641806.1| error-prone DNA polymerase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 218

 Score =  195 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 92/236 (38%), Gaps = 29/236 (12%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +     +  L   S++S   GA S   + ++       A+AITD   L   +   Q + +
Sbjct: 1   MTSE--YAELHCLSNFSFQRGASSARELFERALRHGYQALAITDECTLAGIVRAWQASIS 58

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+  IIG ++ I+                  P  VLLV +  GY+ L +L++       
Sbjct: 59  TGLPLIIGSEMHIENG----------------PKAVLLVESQTGYEALCKLITVARRR-A 101

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            K   R+      E   +GL+ +                +Q         ++ F +RL++
Sbjct: 102 RKGEYRLLREDF-EPSPDGLLAIWLPE--------IEGDAQACLAHGRWLRERFAERLWL 152

Query: 185 NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
            ++ HRG  D  R + ++ LA +  +P VA+ +    +       D + A+ H T 
Sbjct: 153 GVELHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDTMTAIRHHTT 208


>gi|319937397|ref|ZP_08011804.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1]
 gi|319807763|gb|EFW04356.1| DNA-directed DNA polymerase [Coprobacillus sp. 29_1]
          Length = 1438

 Score =  195 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 140/908 (15%), Positives = 276/908 (30%), Gaps = 180/908 (19%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + +L     G + + +LVS        +++ RI    L E   EGL+  +G  +  I  
Sbjct: 589  HMCVLAKDKTGLKNMFKLVSEANTT-YYQKTSRIPRERL-EFYREGLLFGSGCYNSEIFD 646

Query: 158  AFFFNSSQVAEKRLLT--FKKLFG---DRLYVNLQRHRGYD--RYRESQVVQLAYTHELP 210
                 S +  +K +    + ++        +V   R    +  +    ++V  A      
Sbjct: 647  LAMTRSIEELKKAMAFYDYIEILPLDICDYFVERGRVDTKEDLQRILRRIVDTAKEMGKM 706

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
            +VAT +  +L ++D    DV        +           +       E +    ++ ++
Sbjct: 707  IVATGDVHYLDQKDKIFRDVFTCNPKIGLGGTLHPLTDRNNPSAWTPDEYLRTTQEMMDS 766

Query: 271  LEN------TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
            L           +    + I  +         +K         +  LR         +  
Sbjct: 767  LPYLTDDEKYEYVVENTNKIADMIDGSFHVVHDKLFTPHIDNADENLRKLCFDNAHKQYG 826

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +             +RL  EL+ I +  F   + I    ++ + +    VG  RGS   S
Sbjct: 827  E------VLPDIVEKRLTKELDNIIKHGFGVIYYIAHKLVKKSNEAGYLVG-SRGSVGSS 879

Query: 385  VTAYALTITDIDPLR-----------------------------------------FSLL 403
              A    I++++PL                                           ++ 
Sbjct: 880  FVATMAEISEVNPLPPHYYCPNCQYNEFLPDGFIANGFDLPNKVCPKCGKPLKGDGHNIP 939

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  +   +PD D++F  D +     Y +  +G   V +  T  ++  K A      
Sbjct: 940  FETFLGFNADKVPDIDLNFSGDYQPTAHAYTKEIFGESHVYRAGTISTVAEKTA------ 993

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
                 Y       +L+  + +                          L  I++   G+ R
Sbjct: 994  -----YGYARGYAELMGRENSIRT---------------------AELERIAKGCTGVKR 1027

Query: 524  HASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                H  GI++      +    P          +   T F+   I    ++KFD LG   
Sbjct: 1028 TTGQHPGGIIVIPENMDVYDFTPYQYPADDLSAEWKTTHFDFHAIHD-NVLKFDILGHVD 1086

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH-----------LLTTKGTLGIFQLESSG 627
             T+++   D         D+     +    ++           L    G LG+ +  +  
Sbjct: 1087 PTVIRMLQDLTG--IDPKDIPTNDPEVMSLFNSTEALKIDLGYLNCKTGALGLPEFGTKF 1144

Query: 628  MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
            +R  LE   P    D++ L  L                N +  I S    +  ++     
Sbjct: 1145 VRGMLEQTHPTSFSDLVILSGLSHG-------TDVYLGNAETLISSGTCTLKEVIGCRDD 1197

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +++Y         +  G    +A  +   + K     +  + +++     +N +      
Sbjct: 1198 IMVYL--------IEKGLPNKDAFDIMECVRKGKSPVVFPE-KKYEELMRENDVPTWYIE 1248

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK------ 801
            +  ++      Y F K+HAAAY + + + AW K +YP E+ A   T   D  +       
Sbjct: 1249 SCKKI-----KYMFPKAHAAAYVLSAVRVAWWKLYYPREYYAVYFTTRCDAYDIETLLQG 1303

Query: 802  -----------------------------------IKKFCQDARQFNIQIMPPSVNTPCV 826
                                               ++ + +D    NI +         +
Sbjct: 1304 KDVIYAKYQQILNDKQNGVKISNKEEALISVFEIALEMYERDIHFNNISLEKSDSRNFIL 1363

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            D    ++ +     +I G+G      ++EA     F S ED   R    KL    ++ L 
Sbjct: 1364 DPD-DEHGLLPPFTSIDGLGAAVGDSVVEARKVNSFLSKEDVTKRT---KLTNTQIDFLT 1419

Query: 887  FAGALDCF 894
              G  +  
Sbjct: 1420 KIGVFEDM 1427



 Score = 85.6 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 34/70 (48%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS  S ++G  S+ + +++ A     AIAITD  N+ S  E    +    I+ I 
Sbjct: 311 VELHTHSKMSAMDGIGSITDYINRAAYWGHQAIAITDHGNVQSFPEAQMASIKNKIKMIY 370

Query: 72  GCQLDIDMQD 81
           G ++ +   +
Sbjct: 371 GVEMYMIDPE 380


>gi|160915589|ref|ZP_02077800.1| hypothetical protein EUBDOL_01599 [Eubacterium dolichum DSM 3991]
 gi|158432709|gb|EDP10998.1| hypothetical protein EUBDOL_01599 [Eubacterium dolichum DSM 3991]
          Length = 1447

 Score =  195 bits (494), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 140/912 (15%), Positives = 277/912 (30%), Gaps = 192/912 (21%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGK---------QSVRICLSWLQEIGTEG-LIML 147
             + +LV  A G + L ELV+  +                  RI    +++    G L++ 
Sbjct: 588  HVTILVKNAAGLKELFELVTLSHTKYLSYSDKSTGNIVAEPRILREEIEKRRRNGNLLIG 647

Query: 148  TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH-------RGYDR- 194
            +   +G +         +   K +  +        Y+ LQ     RH          DR 
Sbjct: 648  SSCLNGEVFDIAQTRGEEELLKVMQFYD-------YIELQPLGNYRHLVERDSIESMDRL 700

Query: 195  -YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPRVTPDH 252
                  +V+ A      ++A+ +  +    +    D+ ++      +             
Sbjct: 701  KEILRSIVEAAKKCGKRIIASGDVHYAHPNEKMIRDIYISSQAIGGIRHPLYIYNQEKRR 760

Query: 253  YLKNRSEMVSIFSDL---------PEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              K+  + +    ++          EA    V      + +++V  P+  R    + +  
Sbjct: 761  KFKSPDQHLLTTKEMLKEFAWLGEKEAYTYVVTNTNAIADMIEVVKPVKDRLYPPDIEG- 819

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                + +L +        +                +RL  EL+ I    F   + I    
Sbjct: 820  ---SDQKLIDICYENAHKKYGPNL------PDIVEERLKRELDSIIGHGFYVVYYISHLL 870

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------ 399
            ++ +  +   VG  RGS   S  A    IT+++PL                         
Sbjct: 871  VKKSLNDGYLVG-SRGSVGSSFVATMAEITEVNPLAPHYVCPKCHYVKFFTDGSVADGFD 929

Query: 400  -----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
                               + FE FL  +   +PD D++F  D +     Y +  +G + 
Sbjct: 930  LPDIQCPNCGETIRGDGHDIPFETFLGFEGDKVPDIDLNFSGDYQPTAHAYTKEVFGEDH 989

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            V +  T G++  + A   V               K    +                    
Sbjct: 990  VYRAGTIGTVATQTAFGYV---------------KGYQEEMGI----------------- 1017

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMY---RDVRSDLPVTQ 557
                   ++L +++  EG+ R    H  GI++    L      P+     +  +D   T 
Sbjct: 1018 EGGMRNAQVLRLAKGCEGVKRTTGQHPGGIIVIPLDLDVHDFTPVQYPANNPNADWKTTH 1077

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGT 617
            F    I    ++KFD LG    T ++     + QR   VD   IP +D ET  + +    
Sbjct: 1078 FEFHDIHD-NVLKFDILGHVDPTAMR-----MLQRISGVDPVTIPMNDPETMSIFSKVDA 1131

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH-P 676
            L I    S    +      P+     +  +         + ++  +  +    +   +  
Sbjct: 1132 LKI--DTSKACDKTGAAGLPEFGTKFVRGILELTEPTTFDELLKISGLSHGTDVWLGNAK 1189

Query: 677  LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGA 736
             +      T   +I     + +  L  G     A  +  ++ K      +     +I   
Sbjct: 1190 DLIDQNICTLKSVIGCRDDIMVYLLHKGLEPKLAFTIMESVRKGKGLRDE-----WIPEM 1244

Query: 737  SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
             K+G+      +  ++      Y F K+HA AY +++ + AW K H P  +     ++  
Sbjct: 1245 KKHGVEDWYIESCKKI-----KYMFPKAHATAYVMMAIRIAWFKVHLPQYYYCMFFSIRC 1299

Query: 797  DNVEKIKKFCQD--------------------------------ARQFNIQIMPPSVNTP 824
            D  +       +                                  +  ++++       
Sbjct: 1300 DAYDIQTMIQGEQAIRRRMNDIDERLRNNETKRDVSKKDKDIYNTLELALEMVLRGYFFR 1359

Query: 825  CVD--------FKV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
             +D        F V    D+ +     +I G+G   A  ++EA     F S ED   R  
Sbjct: 1360 NIDLNRSASSEFIVDPDNDHYLIPPFTSIDGLGENVADTVVEARKHGAFLSKEDLQRRTS 1419

Query: 874  SKKLNRRVLESL 885
                  + LES+
Sbjct: 1420 LSGTLIKTLESM 1431



 Score = 64.4 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-SQKA-----CAA 65
           V L VH+  S ++G   +   ++        AIA TD   + +  +   + A        
Sbjct: 307 VELHVHTKLSEMDGVCGIEEYIETANEWGMNAIACTDHLVVQAFPKAQHKVAAINKKRET 366

Query: 66  GIQPIIGCQLDIDMQ 80
             + I G ++++   
Sbjct: 367 PFKMIYGIEMNMVDP 381


>gi|325001989|ref|ZP_08123101.1| error-prone DNA polymerase [Pseudonocardia sp. P1]
          Length = 638

 Score =  195 bits (494), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 5/152 (3%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  L  HS +S L+GA +   ++++ A     AIA+TD + ++  + F++ A A GI+ +
Sbjct: 64  YAELHCHSHFSFLDGASAPEELVERAAELGLEAIALTDHDGMYGVVRFAEAARALGIRTV 123

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +L + +        Q     P    ++LL    +GY+ L   +S   +    K    
Sbjct: 124 FGAELSLGLS-----APQNGVADPEGEHLLLLARGPDGYRALCRTISTAQMRGGEKGRPV 178

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
             L  +       +++LTG   G + RA   +
Sbjct: 179 YDLDEVVADTAGRVVVLTGCRKGAVRRALDRH 210


>gi|299144044|ref|ZP_07037124.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus
            sp. oral taxon 386 str. F0131]
 gi|298518529|gb|EFI42268.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus
            sp. oral taxon 386 str. F0131]
          Length = 1421

 Score =  195 bits (494), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 156/931 (16%), Positives = 304/931 (32%), Gaps = 207/931 (22%)

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
               GI+            D  K+     +      SI LLV    G + L +LVS  ++ 
Sbjct: 569  KKLGIK---------TFCDINKLKKDIDSSILFESSISLLVKNNVGLKNLYKLVSESHM- 618

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
            +   +  ++  S + +   EG+++ +G SS  + +A F   S+   + +  +        
Sbjct: 619  NYVNRVAKVPRSLINKY-REGILVGSGNSSSELFKAVFNMESEENIRNIARYYD------ 671

Query: 183  YVNLQRHRGYDRYRESQVVQ--------------LAYTHELPLVATNNSLFLSEEDYEAH 228
            Y+ +Q       Y E+ +V+              L     +P+VAT +  +L E+D    
Sbjct: 672  YIEIQPLENNLNYIENNLVKDYDTLKFINKKLYDLGKELNIPVVATGDVYYLDEKDDITR 731

Query: 229  DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
             V++                     L  R+    +        + + E+  + + ++   
Sbjct: 732  RVILNGQTGRPPENAH-----IPQKLFFRTTDEMLEEFSYLGKDQSYEVVVKNTNMIANL 786

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
               +    +     I +  +++LR                      +    RLD ELN I
Sbjct: 787  CEDIKPIPDGTYPPIIEGADSDLRKICYEKAHEIYGDNL------PEIVENRLDRELNSI 840

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                ++  ++I    ++ +  +   VG  RGS   S  A   +IT+++PL          
Sbjct: 841  ISNGYAVLYIIAQKLVKKSNDDGYLVG-SRGSVGSSFAATMSSITEVNPLPPHYICPNCK 899

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL  +    PD D++F  + +
Sbjct: 900  YFEDMSNGTVDSGIDLPDKICPVCGSELKKDGHDIPFEVFLGFNGDKEPDIDLNFAGEYQ 959

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                +Y +  +G   V +  T G++  K A   V +  +                     
Sbjct: 960  PTAHKYTEELFGEGYVFRAGTIGTVAEKTAYGYVKKFYE--------------------- 998

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPM 545
                             + S   +  I++   G+ R +  H  G++I  +   +    P+
Sbjct: 999  ---------------DKNISNVEIDRIAKAAIGVKRTSGQHPGGVMICPKSKEIFDFTPI 1043

Query: 546  YRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                      +  T F+  +I    ++K D LG    T+++     + +    ++   IP
Sbjct: 1044 QYPADDKSSGVITTHFDYNFI-HGKILKLDILGHDGPTIIK-----MLEDFTGLNSQKIP 1097

Query: 603  FDDHETYHLLTTKG--------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             DD +T  L +                 TLGI +  ++ ++Q L    P    +++ +  
Sbjct: 1098 LDDEKTISLFSCSDELKLNENIFSSSTGTLGIPEFGTNFVKQMLIETHPKNFAELVRISG 1157

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            L     +         K GK K+                VI  +E +M           +
Sbjct: 1158 LSHGTNVWTNNAQELVKAGKAKL--------------SDVICTREDIMLYLIRAG----A 1199

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
            E  +    M K  K +     +      +   +      +  ++     +Y F K+HA A
Sbjct: 1200 ENKMAFDTMEKVRKGK--GLSDEQKKIMNTLPLPNWYIDSCEKI-----EYMFPKAHAVA 1252

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTL-------------EMDNVEKIKKFCQ-------- 807
            Y ++S++ A+ K +YP+ + A   T+                  E+I             
Sbjct: 1253 YVMLSFRIAYYKLNYPLAYYATYFTIKLADFNGELIMKGVNAIKERINDLNNSNDKLSAK 1312

Query: 808  ------------DARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIM 854
                        +      +  P  +       F + DN++   L A  GVG T A +I+
Sbjct: 1313 EKGELTVLEVVLEMFARGFEFAPVDIYKSNASKFDIYDNKVLMPLRAFFGVGETVADNIV 1372

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                   F S+ED   R    K  + V++ L
Sbjct: 1373 SEREKGEFISIEDIIKRT---KATKSVIDIL 1400



 Score = 67.9 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 33/86 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L++HS  S + G  S N    + +     +IAITD +++    E  +     G++ I 
Sbjct: 321 VELKLHSKMSAMNGVSSFNEFAKRASDWGMSSIAITDISDVQGFPEAMECGKKYGLKVIY 380

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G   +        + N     F    
Sbjct: 381 GLDCNFVDNCEDIVKNYNGATFTNSF 406


>gi|315924481|ref|ZP_07920702.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622185|gb|EFV02145.1| DNA polymerase III PolC [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 1442

 Score =  194 bits (493), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 158/904 (17%), Positives = 283/904 (31%), Gaps = 190/904 (21%)

Query: 94   PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSG 153
                 +++     +G Q L +LVS  + +D   +  RI  S LQ+   + L++ +   +G
Sbjct: 613  ERPYHVIIYAKDQDGLQALYDLVSASH-VDYFYKKPRIPKSLLQKK-RKHLLIGSACEAG 670

Query: 154  PIDRAFFFNSSQVAEKRLLTFKKLF-----GDRLYVNLQRHRGYDR----YRESQVVQLA 204
             +  A   N +    + +L F   +     G+  Y+   R+    R        +++ L 
Sbjct: 671  ELYTAVKENWNDARLRPILDFYDYYEVQPLGNNAYL--MRNGDLTRDDLIEINKRIIALG 728

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
                  +VAT +  F++  D +   +L A          D       H  +   +     
Sbjct: 729  RQENKLVVATGDVHFVAPTDAQYRQILQA---GQGYRDADEQPPLYYHSTREMLDEFDYL 785

Query: 265  SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
             D   A E  V   R+ + ++    P+         +      ++E+RN   A  +    
Sbjct: 786  PDDA-AYELVVTNTRKVADLIDDVKPVPDGTFPPVIEG----SDDEIRNSVYANAKELYG 840

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                           R+  EL  I    +S  +LI    ++ +      VG  RGS   S
Sbjct: 841  DPL------PDIVADRIHKELTSIIGNGYSVLYLIAEKLVKHSLDCGYLVG-SRGSVGSS 893

Query: 385  VTAYALTITDIDPLR-----------------------------------------FSLL 403
            + A    IT+++ L                                          F + 
Sbjct: 894  LVAMLCGITEVNSLPPHYICPECKHVEWFDSTKVGVGPDLPDKICPECGHALNKDGFDIP 953

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL       PD D++F  D + E   Y +  +G  +V +  T  +L  K A   V  
Sbjct: 954  FETFLGFKGDKEPDIDLNFSGDNQSEAHHYTEVIFGEGKVFRAGTIATLADKTAYGYV-- 1011

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
                         K    +    VS   +                           G+ R
Sbjct: 1012 -------------KNYLEERGIVVSHAEMDRLIE-------------------GTAGVTR 1039

Query: 524  HASTHAAGIVIGDRP--LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                H  G+++  +   ++Q  P+             T F+   IE   L+K D LG   
Sbjct: 1040 TTGQHPGGVMVVPKDKEITQFTPVQYPANDRDSGTLTTHFDYHSIE-GRLLKLDILGHDD 1098

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQLE 624
             T+L+     + +    VD + I  DD +   L                   T GI +  
Sbjct: 1099 PTMLR-----MLKDITGVDPTTIALDDPKIIGLFEGTDSLDLIDDDFDVPLGTCGIPEFG 1153

Query: 625  SSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE 684
            +S  RQ +    PD   D+I L  L          V+                +      
Sbjct: 1154 TSFARQMVLDAHPDSYADLIRLSGLSH-----GTDVWLGNAQT----------LIENGTA 1198

Query: 685  TQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKT 744
            T   +I     + +  +  G +   A  +   + K      D++         KN + + 
Sbjct: 1199 TLKEVICCRDDIMLGLISMGLAPERAFWIMEHVRKGKGLLDDEE-----PYMRKNNVPEW 1253

Query: 745  IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
               +  ++      Y F K+HAAAY +++ + A+ K +YP  + AA  ++     +    
Sbjct: 1254 YIDSCKKI-----KYMFPKAHAAAYVMMAVRIAYYKVYYPPAYYAAWFSIRAKEFDLGVM 1308

Query: 805  ---------------------------------FCQDARQFNIQIMPPSVNTPCVD-FKV 830
                                                +            +       F +
Sbjct: 1309 KAGKEAVVRKMNEIKAQGNKASNKDSNLYTSLELAWEMFCRGYSFANVDIYKSHYRYFTL 1368

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                +   L A+ G+G   A+ I E +  KPF S ED  +R     +N+  +++L   G 
Sbjct: 1369 DGKTLIPPLTAVDGMGEVVAKSIYEEAKRKPFMSREDMQNRAH---VNKANMDALAAFGC 1425

Query: 891  LDCF 894
            L   
Sbjct: 1426 LSEL 1429



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 33/86 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +HS YS ++    +  I+ +          ITD   + +  E  ++    GI+ + 
Sbjct: 342 VELHMHSQYSAMDAVSKVKKIVRQAVDFGHDIFGITDHGVVQAYPEIMKETKGKGIKVLY 401

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +   D   +T     PF    
Sbjct: 402 GLEGYLVNDDIRIITGDQDEPFGGEF 427


>gi|330880636|gb|EGH14785.1| error-prone DNA polymerase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 199

 Score =  194 bits (492), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 89/227 (39%), Gaps = 29/227 (12%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +     +  L   S++S   GA S   + ++ +     A+AITD   L   +   Q + +
Sbjct: 1   MTSE--YAELHCLSNFSFQRGASSARELFERASRHGYQALAITDECTLAGIVRAWQASIS 58

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+  IIG ++ I+                  P  VLLV +  GY+ L +L++       
Sbjct: 59  TGLPLIIGSEMHIENG----------------PKAVLLVESQTGYEALCKLITVARRR-A 101

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            K   R+      E  ++GL+ +                +Q         ++ F +RL++
Sbjct: 102 RKGEYRLLREDF-EPSSDGLLAIWLPD--------IEGDAQACLAHGRWLRERFAERLWL 152

Query: 185 NLQRHRG-YDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++ HRG  D  R + ++ LA +  +P VA+ +    +       D 
Sbjct: 153 GVELHRGADDEQRLADLLALAQSLGIPAVASGDVHMHARGRRALQDT 199


>gi|225375372|ref|ZP_03752593.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM
            16841]
 gi|225212861|gb|EEG95215.1| hypothetical protein ROSEINA2194_00997 [Roseburia inulinivorans DSM
            16841]
          Length = 1512

 Score =  193 bits (491), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 145/938 (15%), Positives = 293/938 (31%), Gaps = 181/938 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F +           G + ++D  +++  T+            ++L +   G   L  L
Sbjct: 645  VKFIEMLKER------GME-NLDDVNHMVSTSPETVMKMPTYHAIILATNDIGRINLYRL 697

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  +L     +  R+  S   +   EGL++ +   +G + RA      Q    RL+ F 
Sbjct: 698  VSLSHLT-YYNKRPRVPKSEFVKY-REGLLLGSACEAGELYRAIVGGRPQEEIIRLVKFY 755

Query: 176  KLFGDRLYVNLQRHRGYD----------------RYRESQVVQLAYTHELPLVATNNSLF 219
                   Y+ +Q     +                +    ++ +L       +VAT +  F
Sbjct: 756  D------YLEIQPLGNNEFMLRSDKEPVNTMEELQDINRRICRLGEEFNKLVVATCDVHF 809

Query: 220  LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
            L  ED E +  ++        + +  P          +       +   E +        
Sbjct: 810  LDPED-EIYRRIIMAGKGFKDADEQAPLYLRTTEEMLKEFEYLGSAKAEEVVITNPNKIA 868

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
                 +             +C    +  +  LR+           +            ++
Sbjct: 869  DMCEKI-------APVRPDKCPPFIENSDQMLRDICYNKAHSMYGE------ELPPIVKE 915

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RLD ELN I    ++  ++I    +  + ++   VG  RGS   S  A    IT+++PL+
Sbjct: 916  RLDRELNSIISNGYAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFAATMSGITEVNPLQ 974

Query: 400  ---------------------------------------------FSLLFERFLNPDRMS 414
                                                         F + FE FL      
Sbjct: 975  AHYRCEYCKYSDFDSPEVKAFSGRSGCDMPDKICPVCGKKLVKDGFDIPFETFLGFKGNK 1034

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
             PD D++F  + + +   Y +  +G+ +  +  T G+L  K A   +    +        
Sbjct: 1035 EPDIDLNFSGEYQSKAHAYCEVIFGYGQTFRAGTIGTLADKTAFGYIKNYYE-------- 1086

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV- 533
                                       R        +  I Q   G+ R    H  GIV 
Sbjct: 1087 --------------------------ERGIHKRNCEIDRIVQGCVGVRRTTGQHPGGIVV 1120

Query: 534  -IGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                  ++   P+           VT           L+K D LG    T+++     + 
Sbjct: 1121 LPVGEEINTFTPVQHPANDMTTATVTTHFDYHSIDHNLLKLDILGHDDPTMIR-----ML 1175

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
            Q    +D   IP DD     L      LG+   + +G+     G+     +  + +V   
Sbjct: 1176 QDLTGLDPQTIPLDDQTVMSLFMNTSALGVEPEDINGIPLGCLGIPEFGTDFAMQMVIDA 1235

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            +P    +++  +   +G +  +     +      T    I     + I  +  G    ++
Sbjct: 1236 KPTEFSDLIRISGLSHGTDVWLGNAQTLIEQGIATISTAICTRDDIMIYLISMGLDSEQS 1295

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
              +  ++ K    + +     +      + + +    +  ++      Y F K+HAAAY 
Sbjct: 1296 FTIMESVRKGKGLKEE-----WKEEMRAHNVPEWYIDSCLKI-----KYMFPKAHAAAYV 1345

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNV------------------------------- 799
            +++++ A+ K  YP+ + AA  ++                                    
Sbjct: 1346 MMAWRIAYCKVFYPLAYYAAYFSIRATGFNYEIMCQGKERLEYFYKDYTRRKDSLSKKEQ 1405

Query: 800  --EKIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
               +  +  Q+         P  +       F++ D ++  +L  I+G+G   A  + EA
Sbjct: 1406 DVYRDMRIVQEMYARGFDFTPIDIYRALPGRFQIIDGKLMPALNTIEGMGDNAAIAVAEA 1465

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            + D  F S +DF  R    K+ +  ++ +   G L   
Sbjct: 1466 AKDGKFLSKDDFRQRT---KVTKSTIDLMADLGLLGDM 1500



 Score = 73.7 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 2/98 (2%)

Query: 2   TQYLEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           T  ++ SP   V L  H+  S ++G     +I+ +       AIAITD  ++ +  + + 
Sbjct: 392 TTRMDTSPEKRVELHCHTKMSDMDGVSECKDIVKRAMKWGHKAIAITDHGDVQAFPDANH 451

Query: 61  KAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
                   + I G +  +       +T+          
Sbjct: 452 ALSPDDDFKVIYGVEAYLVDDLKDIITDSKGQSLDETF 489


>gi|222083244|ref|YP_002542647.1| DNA polymerase III alpha chain [Agrobacterium vitis S4]
 gi|221738624|gb|ACM39462.1| DNA polymerase III alpha chain [Agrobacterium vitis S4]
          Length = 363

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 100/272 (36%), Gaps = 27/272 (9%)

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV 830
            +I+Y ++W+K  +P  F AA +  +        +  +DA++ ++ I P  +N    D  +
Sbjct: 7    LIAYASSWLKCWHPDVFCAALLNAQPMGFYAPAQIVRDAQKHHVVIRPVCINASRWDCTL 66

Query: 831  GDN-----RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                     +      +KG+       I+ A  D+PF+S++D   R +   +    L  L
Sbjct: 67   EPTEDGRFAVRLGFRMVKGLANKHGAAIVAAREDQPFESIDDLWRRAN---VPSASLVQL 123

Query: 886  VFAGALD-CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA-----HEKGTFSDKIT 939
              A A       +R + L +++ ++                +FA      +         
Sbjct: 124  AEADAFQPGLKLARREALWAIEALRDE-----------PLPLFAAAAAREQAVIPEAIEP 172

Query: 940  LEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAA 999
            +       S      +   +G     HPL   +  L K  I   E+++    G  +  A 
Sbjct: 173  VVALKPMTSGGEVVEDYSHVGLTLRAHPLSFLRNDLTKRRIVTCEDAMNARDGKWLEAAG 232

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +V+ +Q+  + KG  + ++T  +         
Sbjct: 233  LVLVRQRPGSAKG--VMFITIEDETSHANLVV 262


>gi|118586857|ref|ZP_01544291.1| DNA polymerase III, alpha subunit [Oenococcus oeni ATCC BAA-1163]
 gi|290890494|ref|ZP_06553569.1| hypothetical protein AWRIB429_0959 [Oenococcus oeni AWRIB429]
 gi|118432689|gb|EAV39421.1| DNA polymerase III, alpha subunit [Oenococcus oeni ATCC BAA-1163]
 gi|290479890|gb|EFD88539.1| hypothetical protein AWRIB429_0959 [Oenococcus oeni AWRIB429]
          Length = 1437

 Score =  193 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 160/968 (16%), Positives = 304/968 (31%), Gaps = 198/968 (20%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A         G  +  D Q N    +           + +LV    G + L +LVS
Sbjct: 570  FLKEAEEN-----YGV-VY-DEQLNEHTDDHESWRQTRPTHLSILVKNQTGLKNLYKLVS 622

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               + +   +  R+  S L +    GL++ +G   G +           A +   +    
Sbjct: 623  ESNI-NYHYRVSRVPKSLLTKY-RNGLLVGSGDIGGNLFDTLAREGIDKAIELADSI--- 677

Query: 178  FGDRL-YVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNSLFLSE 222
                  Y+ +Q    Y                    Q V+LA   ELPLV T +  +L+E
Sbjct: 678  ---NYDYIEVQPLENYQPRIESGFIKDRATLEKLIKQYVKLADILELPLVVTGDVHYLTE 734

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARR 280
            +D     +L+    +   +  +      D  +K    ++  F+     +A E  VE + +
Sbjct: 735  KDRIYRTILLNSKIARSAAAGETRYTLADLSMKKTQHLLDEFAFLGKEKAYEIVVENSHK 794

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             + ++    P+       + +      E+ LR KA A  +                 ++R
Sbjct: 795  INQMIDDVQPLKKGLSTPKIEG----SEDILRKKAYARAKEMYGNPL------PDLIQKR 844

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            LD ELN I    ++  ++I    +  + K+   VG  RGS   S+ A  + IT+++PL  
Sbjct: 845  LDRELNAIIGNGYAVIYVISQRLVDKSNKDGYIVG-SRGSVGSSLVATMMGITEVNPLPP 903

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                     ++ FE FL      +PD D
Sbjct: 904  HYRSVNGNYTEFVEDANVSSGFDLPEKRNPVDGTILIGDGQNIPFETFLGFKGDKVPDID 963

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +     Y +  +G   V +  T G++  K A   V                  
Sbjct: 964  LNFSGDYQPIAHNYTKVMFGENNVFRAGTIGTVAEKTAYGMV------------------ 1005

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDR 537
                              + EA            +S  + G+ R    HA GI+I   D 
Sbjct: 1006 ----------------KNYEEANDVHYRKAEEDRLSNGITGVKRTTGQHAGGIIIIPSDH 1049

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             +    P+      D   + +    ++   +   + L +  L     +L    Q    +D
Sbjct: 1050 DVYDFTPIQFPA--DDTKSNWKTTHLDYHSIH-DNVLKMDILGHDDPTLLRALQDMSGID 1106

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               +P +D     L T+     +   E   M        P+   + +  +          
Sbjct: 1107 PKTVPVNDPGVLSLFTSTK--ALHVTEDEIMSNTGTLGIPEFGTNFVRGMLEQTKPHNFG 1164

Query: 658  IVVYNNRKNGKEKIVSIH-PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             ++  +  +    + + +   +    +   G +I     +    +  G   S+A  +   
Sbjct: 1165 ELLQISGLSHGTNVWNGNADELIKNGQANIGTVIGTRDKIMTDLMSFGLESSDAFQIMEK 1224

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            + K      +                  +     + + K   Y F ++HAAAY + + + 
Sbjct: 1225 VRKGKGISPE--------HMEILKAHPKVPNWYIDSMLKI-QYMFPRAHAAAYVMSALRI 1275

Query: 777  AWMKTHYPVEFLAASM-----------------------------------TLEMDNVEK 801
            A+ K ++P  + AA                                       E      
Sbjct: 1276 AFFKVYFPAIYYAAFFSVRAKDKTIDAVGITQGKTKVQALVKSYRSRYNDLNKEESKTLA 1335

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
            I +   +A Q  I+     +      D+K+  N+I     A++G+G   A+ I+ A A+ 
Sbjct: 1336 IYEIANEAWQRGIEFKMVDLYKSEAFDWKIDGNQIILPFVALQGLGDNVAKAIVAARAEH 1395

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             F S ED   R     +N+ ++         D    +       LD +            
Sbjct: 1396 EFISKEDLAKR---GSVNKTLI---------DFMDQN-----HMLDGMTD---------- 1428

Query: 921  NKHENIFA 928
                ++FA
Sbjct: 1429 ANQMDLFA 1436



 Score = 72.1 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L  H++ + L    S + +  + A   Q A+AITD  ++ +  E S  A   G++ I 
Sbjct: 324 IELHAHTTMTTLNAVNSASELFAQAAEWNQDALAITDNADVQAFPEASASAKKTGVKAIY 383

Query: 72  GCQL-DIDMQDNLKMTNQGKTPFPTVPSI 99
           G +   ++  + + +    +       +I
Sbjct: 384 GLEANYVEDGEAIAINTNREILKDCQYTI 412


>gi|116491013|ref|YP_810557.1| DNA polymerase III, alpha subunit ( type) [Oenococcus oeni PSU-1]
 gi|116091738|gb|ABJ56892.1| DNA polymerase III, alpha subunit (gram-positive type) [Oenococcus
            oeni PSU-1]
          Length = 1437

 Score =  193 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 160/968 (16%), Positives = 304/968 (31%), Gaps = 198/968 (20%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A         G  +  D Q N    +           + +LV    G + L +LVS
Sbjct: 570  FLKEAEEN-----YGV-VY-DEQLNEHTDDHESWRQTRPTHLSILVKNQTGLKNLYKLVS 622

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               + +   +  R+  S L +    GL++ +G   G +           A +   +    
Sbjct: 623  ESNI-NYHYRVSRVPKSLLTKY-RNGLLVGSGDIGGNLFDTLAREGIDKAIELADSI--- 677

Query: 178  FGDRL-YVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNSLFLSE 222
                  Y+ +Q    Y                    Q V+LA   ELPLV T +  +L+E
Sbjct: 678  ---NYDYIEVQPLENYQPRIESGFIKDRATLEKLIKQYVKLADILELPLVVTGDVHYLTE 734

Query: 223  EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD--LPEALENTVEIARR 280
            +D     +L+    +   +  +      D  +K    ++  F+     +A E  VE + +
Sbjct: 735  KDRIYRTILLNSKIARSAAAGETRYTLADLSMKKTQHLLDEFAFLGKEKAYEIVVENSHK 794

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             + ++    P+       + +      E+ LR KA A  +                 ++R
Sbjct: 795  INQMIDDVQPLKKGLSTPKIEG----SEDILRKKAYARAKEMYGNPL------PDLIQKR 844

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            LD ELN I    ++  ++I    +  + K+   VG  RGS   S+ A  + IT+++PL  
Sbjct: 845  LDRELNAIIGNGYAVIYVISQRLVDKSNKDGYIVG-SRGSVGSSLVATMMGITEVNPLPP 903

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                     ++ FE FL      +PD D
Sbjct: 904  HYRSVNGNYTEFVEDANVSSGFDLPEKRNPVDGTILIGDGQNIPFETFLGFKGDKVPDID 963

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +     Y +  +G   V +  T G++  K A   V                  
Sbjct: 964  LNFSGDYQPIAHNYTKVMFGENNVFRAGTIGTVAEKTAYGMV------------------ 1005

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDR 537
                              + EA            +S  + G+ R    HA GI+I   D 
Sbjct: 1006 ----------------KNYEEANDVHYRKAEEDRLSNGITGVKRTTGQHAGGIIIIPSDH 1049

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             +    P+      D   + +    ++   +   + L +  L     +L    Q    +D
Sbjct: 1050 DVYDFTPIQFPA--DDTKSNWKTTHLDYHSIH-DNVLKMDILGHDDPTLLRALQDMSGID 1106

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
               +P +D     L T+     +   E   M        P+   + +  +          
Sbjct: 1107 PKTVPVNDPGVLSLFTSTK--ALHVTEDEIMSNTGTLGIPEFGTNFVRGMLEQTKPHNFG 1164

Query: 658  IVVYNNRKNGKEKIVSIH-PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
             ++  +  +    + + +   +    +   G +I     +    +  G   S+A  +   
Sbjct: 1165 ELLQISGLSHGTNVWNGNADELIKNGQANIGTVIGTRDKIMTDLMSFGLESSDAFQIMEK 1224

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            + K      +                  +     + + K   Y F ++HAAAY + + + 
Sbjct: 1225 VRKGKGISPE--------HMEILKAHPKVPNWYIDSMLKI-QYMFPRAHAAAYVMSALRI 1275

Query: 777  AWMKTHYPVEFLAASM-----------------------------------TLEMDNVEK 801
            A+ K ++P  + AA                                       E      
Sbjct: 1276 AFFKVYFPAIYYAAFFSVRAKDKTIDAVGITQGKTKVQALVRSYRSRYNDLNKEESKTLA 1335

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
            I +   +A Q  I+     +      D+K+  N+I     A++G+G   A+ I+ A A+ 
Sbjct: 1336 IYEIANEAWQRGIEFKMVDLYKSEAFDWKIDGNQIILPFVALQGLGDNVAKAIVAARAEH 1395

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             F S ED   R     +N+ ++         D    +       LD +            
Sbjct: 1396 EFISKEDLAKR---GSVNKTLI---------DFMDQN-----HMLDGMTD---------- 1428

Query: 921  NKHENIFA 928
                ++FA
Sbjct: 1429 ANQMDLFA 1436



 Score = 72.1 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L  H++ + L    S + +  + A   Q A+AITD  ++ +  E S  A   G++ I 
Sbjct: 324 IELHAHTTMTTLNAVNSASELFAQAAEWNQDALAITDNADVQAFPEASASAKKTGVKAIY 383

Query: 72  GCQL-DIDMQDNLKMTNQGKTPFPTVPSI 99
           G +   ++  + + +    +       +I
Sbjct: 384 GLEANYVEDGEAIAINTNREILKDCQYTI 412


>gi|293402030|ref|ZP_06646169.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304422|gb|EFE45672.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 1443

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 132/907 (14%), Positives = 279/907 (30%), Gaps = 182/907 (20%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQS---------VRICLSWLQEIG-TEGLIML 147
             + +L     G + L EL++  +                  RI    +++      L++ 
Sbjct: 585  HVTILAKNMAGLKELFELITLSHTEYLSYNRKSTANVVAEPRIIRKEIEKRRVNGNLLIG 644

Query: 148  TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ----------RHRGYDRYRE 197
            +   +G +       S +   + +  +        Y+ +Q          R+   D  R 
Sbjct: 645  SSCVNGEVFDMAQTRSEKELAEVMQFYD-------YIEIQPLANYRFLVERNSIVDEARL 697

Query: 198  SQVV----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMA------VAHSTVVSQKDRPR 247
             +++    + A      +VAT+++ ++   +    D+ +       + H+  +  ++R R
Sbjct: 698  KEILLSIVEKAEEMGKIIVATSDAHYVHPNEKLIRDIYINSQAIGGMRHALYIYNQERRR 757

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                     R+    +        +   ++  + +  +     ++    +       +  
Sbjct: 758  KFKSPDQHLRTTDEMLKEYAWLGQQRAYDMVIKNTKAIADQIEVIRPVKDALYPPDIEGS 817

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
            + +LR         +                +RL+ EL+ I    +   + I    ++ +
Sbjct: 818  DQKLREICFENAHKKYGP------VLPDIVEKRLNRELDSIIGAGYYVVYYISHLLVKKS 871

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
              +   VG  RGS   S  A    IT+++PL                             
Sbjct: 872  LDDGYLVG-SRGSVGSSFVATMSEITEVNPLAPHYVCPKCHYVKFFTDGSVLNGYDLPDI 930

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                           + FE FL  +   +PD D++F  D +     Y +  +G + V + 
Sbjct: 931  ECPNCGETIRGDGHDIPFETFLGFEGDKVPDIDLNFSGDYQPNAHAYTKEVFGEDHVYRA 990

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T G++  K A   V               K    +     S++                
Sbjct: 991  GTIGTVAEKTAFGYV---------------KGYEEEMGIEGSMRN--------------- 1020

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMY---RDVRSDLPVTQFNMK 561
               ++L +++  EG+ R    H  GIV+    L      P+     D  ++   T F+  
Sbjct: 1021 --AQILRLAKGCEGVKRTTGQHPGGIVVVPLDLDVHDFTPVQYPANDPYAEWKTTHFDFH 1078

Query: 562  WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
             I    ++KFD LG    T ++              + +   +    +  +         
Sbjct: 1079 QIHD-NILKFDILGHVDPTAMKMLERMSG--IDVTTIPMNDPETMSIFSKVDALKIDTSK 1135

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
              E +G     E   P     +     L RP   D ++  +   +G +  +     +   
Sbjct: 1136 NTEETGAAGLPEFGTPFVRGIL----ELTRPTTFDELLKISGLSHGTDVWLGNAKDLIDD 1191

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
               T   +I     + +  L  G     A  +  ++ K    + +     +I    +NG+
Sbjct: 1192 GICTLKSVIGCRDDIMVYLLHKGLRPKLAFTIMESVRKGKGLKDE-----WIPEMKENGV 1246

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
                  +  ++      Y F K+HA AY +++ + AW K H P  +     ++  D  + 
Sbjct: 1247 EDWYIESCKKI-----KYMFPKAHAVAYVMMAIRIAWFKVHEPQYYYCMFFSIRCDAYDI 1301

Query: 802  IKKFCQD--------------------------------ARQFNIQIMPPSVNTPCVD-- 827
                  +                                  +  +++         +D  
Sbjct: 1302 ETMIKGEQSIRKKMQEIDFKLHDNAQKKDVTKKDKDTYNTLELALEMTLRGYYFANIDLM 1361

Query: 828  ------FKVGDNR---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
                  F V   R   I     +I G+G + A  ++EA  +  F S ED   R       
Sbjct: 1362 RSASRDFIVDPERPNYIIPPFTSIDGLGESVADTVVEARKNGAFLSKEDLQRRTALSGTL 1421

Query: 879  RRVLESL 885
             + LES+
Sbjct: 1422 IKKLESM 1428



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS------ALEFSQKACAA 65
           V L VH+  S ++G   ++  +         AIA+TD   + +       ++   K    
Sbjct: 304 VELHVHTKLSEMDGVCDISEYIKTANEWGWDAIALTDHRVVQAFPTAQTVVDGINKKRET 363

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
            ++ + G ++++       + N   T      
Sbjct: 364 PMKILYGVEMNMVDPMLQIVRNGDDTELEKGT 395


>gi|253579638|ref|ZP_04856907.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849139|gb|EES77100.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 1489

 Score =  192 bits (488), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 139/947 (14%), Positives = 290/947 (30%), Gaps = 152/947 (16%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F +      I+       D+DM +     +           +++      G   L +L
Sbjct: 618  VKFVKMLEERDIR-------DVDMLNEQGAVSVNTIRKLPTYHVIIFARNETGRINLYKL 670

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS+ +L     +  R+  S L++   +GL++ +   +G + +A   N+      RL+ F 
Sbjct: 671  VSQSHLK-YYHRRPRVPKSVLEQY-RDGLLVGSACEAGELYQAILRNAPDTEIARLVNFY 728

Query: 176  KLFGDRLYVNLQ-----RHRGYDRYR------------ESQVVQLAYTHELPLVATNNSL 218
                   Y+ +Q     R    D                 ++V+L    + P+VAT +  
Sbjct: 729  D------YLEIQPVGNNRFMIADDKHDMISSEEDLKEINRKIVKLGEQFKKPVVATCDVH 782

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            F+  +D     ++MA          +      +           +  +         E  
Sbjct: 783  FMDPQDEIYRRIIMA---------GNGFSDADEQAPLYLRTTEEMLEEFAYLGSEKAEEV 833

Query: 279  RRCS-FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
               +   +      +      +   + +  + +L+N                     +  
Sbjct: 834  VITNTNKIADMIEKISPIHPDKFPPVIENSDQDLKNICFTKAHEMYGDPL------PEIV 887

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
              RLD ELN I    ++  ++I    +  + ++   VG  RGS   S+ A    IT+++P
Sbjct: 888  ESRLDRELNSIISNGYAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSLAATMSGITEVNP 946

Query: 398  LR-FSLLFERFLNPDRMSMPDFDIDFCQ---DRRDEVIRYVQNKYGHERVAQI------- 446
            L    L             P+          D  D++      +   E            
Sbjct: 947  LPPHYLCPNPDCKYSDFDSPEVKQYAGMAGCDMPDKICPKCGTRMKKEGFDIPFETFLGF 1006

Query: 447  -----ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
                        +     +  R  ++ + +            A   +   + +    R  
Sbjct: 1007 KGDKEPDIDLNFSGEYQANAHRYTEVIFGKGQTFKAGTIGTLAEKTAFGYVKNYFEERGV 1066

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVT 556
                     +  I Q   G+ R    H  GI+       + +  P+         D+  T
Sbjct: 1067 HKRY---CEINRIVQGCTGVRRTTGQHPGGIIVLPVGEEIEKFTPVQHPANDVNSDIITT 1123

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             F+   I    L+K D LG    T+++     + +    +    +P D  +   L  +  
Sbjct: 1124 HFDYHSI-DGNLLKLDILGHDDPTMIR-----MLEDLTGISARDVPLDQRDVMSLFASTK 1177

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
             L I + E  G  +      P+   D    + +       + ++     +    +   + 
Sbjct: 1178 ALKI-EPEDIGGCKLGCLGIPEFGTDFAMQMLIDTKPKYFSDLIRIAGLSHGTDVWLGNA 1236

Query: 677  L-IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
              +    K T    I     + I  +  G     A  +  ++ K      +     +I  
Sbjct: 1237 QVLIQEGKATISTAICTRDDIMIYLIGKGVESGLAFTIMESVRKGKGLRDE-----WIET 1291

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              ++G+      +      K   Y F K+HAAAY +++Y+ AW K   P+ + AA  ++ 
Sbjct: 1292 MKEHGVPDWYIWSC-----KLIKYMFPKAHAAAYVMMAYRIAWYKVFQPLAYYAAYFSIR 1346

Query: 796  MDNVEKIKKFC---------------------------------QDARQFNIQIMPPSVN 822
                                                        Q+      + +P  + 
Sbjct: 1347 ATAFSYEMMCMGKERLEYYMAEIRKKGDSASKKELDTLKDMRIVQEMYARGFEFVPIDLY 1406

Query: 823  T-PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
            T     F++ D ++  SLA I G+G   A  +++A+    F S +DF  R    K+++ V
Sbjct: 1407 TAKAQRFQIVDGKLMPSLATIDGLGDKAADAVVDAAKQGKFLSKDDFRDRT---KVSKTV 1463

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
            +                        ++    +       +   ++F 
Sbjct: 1464 I------------------------DLMDDLKLFGDIPQSNQMSLFD 1486



 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 10/78 (12%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA--------- 62
           V L  H+  S ++G     +++ +      PAIAITD   + +  E              
Sbjct: 369 VELHCHTKMSDMDGVTDAKSLVKRAYEWGHPAIAITDHGVVQAFPEA-NHCFDAWGGCVP 427

Query: 63  CAAGIQPIIGCQLDIDMQ 80
             +  + + G +  +   
Sbjct: 428 KDSDFKVLYGMEGYLVDD 445


>gi|282882108|ref|ZP_06290749.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus
            lacrimalis 315-B]
 gi|281298138|gb|EFA90593.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus
            lacrimalis 315-B]
          Length = 1415

 Score =  192 bits (488), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 153/893 (17%), Positives = 299/893 (33%), Gaps = 197/893 (22%)

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
             S+ +L    EG + L +LVS  ++     +  ++  S + +   +GL++ +G  SG I 
Sbjct: 589  SSLSILTKNEEGLKNLYKLVSDSHMK-YFNRVAKVPRSLINKY-RKGLLIGSGDESGEIF 646

Query: 157  RAFFFNSS-QVAEKRLLTFKKLFGDRLYVNLQR-------------HRGYDRYRESQVVQ 202
             AFF N      EK    +        Y+ +Q               R        ++ +
Sbjct: 647  NAFFRNLEIDEVEKIASFYD-------YLEIQPIDNFIPSLLRNKLTREDIIEINKKICK 699

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
            +     +P++AT+N  +L E+D     +++                     L  RS  + 
Sbjct: 700  VGENLGIPVIATSNCFYLDEKDDLVRRIILNGKVGAPDYNAK-----IKQKLYFRSTDLM 754

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
            +   L    +  +E+    + ++      +    + +   + +  E  L+N         
Sbjct: 755  LEEFLYLGTDKAMEVVVTNTNLINDSIDNVKPIPDGKYPPVIEGSEETLKNITYKKAHEI 814

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                        Q    RL  EL+ I    ++  ++I    ++ +  +   VG  RGS  
Sbjct: 815  YGDPL------PQIVEARLKKELDSIISNGYAVLYIIAQKLVKKSNDDGYLVG-SRGSVG 867

Query: 383  GSVTAYALTITDIDPLR-----------------------------------------FS 401
             S  A+   IT+++PL                                           +
Sbjct: 868  SSFAAHMADITEVNPLPAHYICPQCKYSEFMEDPTIGSGVDLADKNCPKCGHKLNKNGHN 927

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            + FE FL       PD D++F  + +    +Y +  +G   V +  T G +  K A   V
Sbjct: 928  IPFEVFLGFYGDKEPDIDLNFAGEYQPNAHKYTEELFGKGYVFRAGTIGKVAYKTAYGYV 987

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
             +  +                                     +   VDRL   +  +   
Sbjct: 988  KKFFENQEDI--------------------------------SQTEVDRLTIEATGV--- 1012

Query: 522  YRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGL 576
             R +  H  G++I    + +    P+          +  T F+  +I    ++K D LG 
Sbjct: 1013 KRTSGQHPGGVMICPKSKDIFDFTPIQYPADDKSSGVITTHFDYNFI-HGKILKLDILGH 1071

Query: 577  KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQ 622
               T+++     + +  + +D S IP DD +T  L ++                TLGI +
Sbjct: 1072 DGPTIIK-----MLEDFIGIDTSKIPLDDKDTLSLFSSGEKLNLDKNIFDVSTGTLGIPE 1126

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
              +  +RQ L   +P    +++ +  L                N  + + S    +  ++
Sbjct: 1127 FGTGFVRQMLIDTKPKNFAELVRISGLSHG-------TDVWLGNAADLVSSGQASLSEVI 1179

Query: 683  KETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
               + +++Y                +E  +    M K  K +     E  I   +   + 
Sbjct: 1180 CTREDIMLYLIAAG-----------AENKMAFDTMEKVRKGK--GLTEEQIKIMNNLKLP 1226

Query: 743  KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL-------- 794
                 +  ++      Y F K+HA AY ++S++ A+ K +YP+ F A   T+        
Sbjct: 1227 PWYIDSCLKI-----KYMFPKAHAVAYVMLSFRIAYCKLNYPLAFYATYFTIKLSDFVGE 1281

Query: 795  ------------------------EMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVDFK 829
                                    +      I +   +     ++ +P  +      +F 
Sbjct: 1282 VIINGPEAIKAQIDFINNKETPSSKEQTQMPIYEVALEMYSRGLEFLPVDIYKSKAQEFT 1341

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
            + D +I   L A+ GVG   A++I+EA  D  F S ED   R    K+ + +L
Sbjct: 1342 IEDKKIRMPLRALTGVGEQAAKNIIEARNDGQFLSKEDLLKRA---KVGKSLL 1391



 Score = 69.0 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L+VH+  S + G  S ++   +  +    AIAITD +++    E    +    I+ I 
Sbjct: 316 VELRVHTKMSQMNGVTSFSDFAKRAKSFGHKAIAITDVSDVQGFPEAMDASKDFDIKVIY 375

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G   +    +   + N  +       
Sbjct: 376 GLDANFVDDEEDIVINYNENKSYNTY 401


>gi|116627026|ref|YP_819645.1| DNA polymerase III PolC [Streptococcus thermophilus LMD-9]
 gi|122268369|sp|Q03MX3|DPO3_STRTD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|116100303|gb|ABJ65449.1| DNA polymerase III catalytic subunit, PolC type [Streptococcus
            thermophilus LMD-9]
 gi|312277486|gb|ADQ62143.1| DNA polymerase III polC-type [Streptococcus thermophilus ND03]
          Length = 1464

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 132/955 (13%), Positives = 294/955 (30%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N ++ +        V    L V    G + L +LVS    +   +   RI    L E   
Sbjct: 602  NTELVSDDSYKKSRVKHATLYVQNQTGLKNLFKLVSLSN-VSYFEGVARIPRKVLDEY-R 659

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EG+I+ +  + G +      +    A +    +        ++ +               
Sbjct: 660  EGIIVGSACADGEVFDTLLSHGIDKAVEVAKYYD-------FIEVMPPAIYAPLIAKDLI 712

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRP 246
               G        ++++A   + P++AT N  +++ ED    ++++ A+    ++++    
Sbjct: 713  KDEGAIEQLIKDLIEVANRLDKPVLATGNVHYINPEDAIYREIIVRALGQGAMINRPIGK 772

Query: 247  RVTPDHYLKNRSEMVSIFSD--------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                       +   +               A E  V   +  +  ++    +       
Sbjct: 773  GENAQPAPLPEAHFRTTNEMLDEFAFLGKDLAYEIVVANTQAMANQIEEVEVVKKDLYTP 832

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  +++       KA            +           R++ EL+ I    F+  +L
Sbjct: 833  YIDRAEEQVAEMTYAKAFE----------LYGNPLPDIIDLRIEKELSSILGNGFAVIYL 882

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +  + +    VG  RGS   S  A  + IT+++P+                    
Sbjct: 883  ASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYLCPKCQHSEFITDGSY 941

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  D +      V++ 
Sbjct: 942  GSGFDLPDKECSECGTEYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDI 1001

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G +   +  T G++  + A   V +  +  Y++  R  +                    
Sbjct: 1002 FGEQYAFRAGTVGTVADRTAYGFV-KGYERDYNKFYRDAE-------------------- 1040

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++  + G+ R+   H  GIV       +    P+          
Sbjct: 1041 -------------VDRLAMGVAGVKRNTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAA 1087

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D   I  DD +   L 
Sbjct: 1088 WQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQDLSGIDPKDIRADDPDVMKLF 1141

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +S     +     + +  ++       P     ++  +   +G + 
Sbjct: 1142 SGTEVLGVTPEQIGTSTGVLGIPEFGTNFVRGMVEET---HPTTFAELLQLSGLSHGTDV 1198

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +      T   +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1199 WLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLDPKMAFTIMERVRKGMWLKISEEER 1258

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A +        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1259 NGYIQAMRENNVPDWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1314

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     E                                          +  +    
Sbjct: 1315 YFSIRAKAFELKTMSAGLDAVKARMEDIKEKRQRNEATNLENDLFTTLEIVNEMLERGFT 1374

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A++G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1375 FGQLDLYKSQATEFLIEGDTLIPPFIALEGLGENVAKQLVAAREEGEFLSKTELRKR--- 1431

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E L      D  G      L ++               +   ++F  
Sbjct: 1432 GGLSSTLVERL------DEMGI-----LGNMPE-------------DNQLSLFDD 1462



 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 38/90 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++  ++D  A    PA+AITD  N+ S      KA  AGI+ I 
Sbjct: 340 VEFHAHTNMSTMDAIPTVEELIDTAAFWGHPAVAITDHANVQSFPHGYHKAKKAGIKAIF 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       + N           +V 
Sbjct: 400 GLEANLVEDKVPIVYNSENLELKEATYVVF 429


>gi|300813717|ref|ZP_07094037.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus
            sp. oral taxon 836 str. F0141]
 gi|300512174|gb|EFK39354.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus
            sp. oral taxon 836 str. F0141]
          Length = 1415

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 157/895 (17%), Positives = 304/895 (33%), Gaps = 201/895 (22%)

Query: 97   PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
             S+ +L    EG + L +LVS  ++ +   +  ++  S + +   +GL++ +G  SG I 
Sbjct: 589  SSLSILTKNEEGLKNLYKLVSDSHM-NYFNRVAKVPRSLINKY-RKGLLIGSGDESGEIF 646

Query: 157  RAFFFNSS-QVAEKRLLTFKKLFGDRLYVNLQR-------------HRGYDRYRESQVVQ 202
             AFF N      EK    +        Y+ +Q               R        ++ +
Sbjct: 647  NAFFRNLEIDEVEKIASFYD-------YLEIQPIDNFIPSLLRNKLTREDIIEINKKICK 699

Query: 203  LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
            +     +P++AT+N  +L E+D     +++   +  V       ++    Y K+   M+ 
Sbjct: 700  VGENLGIPVIATSNCFYLDEKDDLVRRIIL---NGKVGVPDYNAKIKQKLYFKSTDLMLE 756

Query: 263  IFSD--LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
             FS     +A+E  V      +  +    PI         +  ++     L+N       
Sbjct: 757  EFSYLGADKAMEVVVTNTNLINDSIDNVKPIPDGKYPPVIEGSEET----LKNITYKKAH 812

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                          Q    RL  EL+ I    ++  ++I    ++ +  +   VG  RGS
Sbjct: 813  EIYGDPL------PQIVEARLKKELDSIISNGYAVLYIIAQKLVKKSNDDGYLVG-SRGS 865

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S  A+   IT+++PL                                          
Sbjct: 866  VGSSFAAHMADITEVNPLPAHYICPQCKYSEFMEDPTIGSGVDLADKNCPKCGHKLNKNG 925

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
             ++ FE FL       PD D++F  + +    +Y +  +G   V +  T G +  K A  
Sbjct: 926  HNIPFEVFLGFYGDKEPDIDLNFAGEYQPNAHKYTEELFGKGYVFRAGTIGKVAYKTAYG 985

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V +  +                                     +   VDRL   +  + 
Sbjct: 986  YVKKFFENQEDI--------------------------------SQTEVDRLTIEATGV- 1012

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
               R +  H  G++I    + +    P+          +  T F+  +I    ++K D L
Sbjct: 1013 --KRTSGQHPGGVMICPKSKDIFDFTPIQYPADDKSSGVITTHFDYNFI-HGKILKLDIL 1069

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGI 620
            G    T+++     + +  + +D S IP DD +T  L ++                TLGI
Sbjct: 1070 GHDGPTIIK-----MLEDFIGIDTSKIPLDDKDTLSLFSSGEKLNLDKNIFDVSTGTLGI 1124

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +  +RQ L   +P    +++ +  L                N  + + S    +  
Sbjct: 1125 PEFGTGFVRQMLIDTKPKNFAELVRISGLSHG-------TDVWLGNAADLVSSGQASLSE 1177

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            ++   + +++Y                +E  +    M K  K +     +  I   +   
Sbjct: 1178 VICTREDIMLYLIAAG-----------AENKMAFDTMEKVRKGK--GLTDEQIKIMNNLK 1224

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL------ 794
            +      +  ++      Y F K+HA AY ++S++ A+ K +YP+ F A   T+      
Sbjct: 1225 LPPWYIDSCLKI-----KYMFPKAHAVAYVMLSFRIAYCKLNYPLAFYATYFTIKLSDFV 1279

Query: 795  --------------------------EMDNVEKIKKFCQDARQFNIQIMPPSVNT-PCVD 827
                                      +      I +   +     ++ +P  +      +
Sbjct: 1280 GEVIINGPEAIKAQIDFINNKETPSSKEQTQMPIYEVALEMYSRGLEFLPVDIYKSKAQE 1339

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
            F + D +I   L A+ GVG   A++I+EA  D  F S ED   R    K+ + +L
Sbjct: 1340 FTIEDKKIRMPLRALTGVGEQAAKNIIEARNDGQFLSKEDLLKRA---KVGKSLL 1391



 Score = 69.0 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L+VH+  S + G  S ++   +  +    AIAITD +++    E    +    I+ I 
Sbjct: 316 VELRVHTKMSQMNGVTSFSDFAKRAKSFGHKAIAITDVSDVQGFPEAMDASKDFDIKVIY 375

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G   +    +   + N  +       
Sbjct: 376 GLDANFVDDEEDIVINYNENKSYNTY 401


>gi|291544892|emb|CBL18001.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus sp.
            18P13]
          Length = 1444

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 141/902 (15%), Positives = 277/902 (30%), Gaps = 167/902 (18%)

Query: 85   MTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGL 144
               +           ++L     G + L  L+S  ++ D   +   +  S L +   EGL
Sbjct: 606  KVQKIDARKLKSFHQIILAKNQTGLKNLYRLISYGHI-DCFYKKPLMPKSQLLKYH-EGL 663

Query: 145  IMLTGGSSGPIDRAFFFNS-SQVAEKRLLTFKKLFGDRLYVNLQ---------RHRGYDR 194
            +  +   +G + RA           +    +        Y+ +Q         R+   + 
Sbjct: 664  LFGSACEAGELFRAMVDGRPYAELLELAKFYD-------YLEIQPLGNNAFMLRNGTAES 716

Query: 195  Y-----RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
                      + ++     LP+VAT +  F+  +D +   +LMA        +    +  
Sbjct: 717  EDDLKNWNRMICKIGDDLGLPVVATCDVHFMDPKDGKYRQILMAGN----GFKDADQQAP 772

Query: 250  PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
                  +       +    +A E  VE   R + ++    PI         +      E 
Sbjct: 773  LYLRTTDEMLEEFSYLGQEKAYEVVVENTNRIADLIDFVRPIPKGTFTPNIEG----AEE 828

Query: 310  ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKK 369
            +L                       +   +RLD EL+ I +  FS  ++I    +  +++
Sbjct: 829  DLTRITNNRAREIYGDPL------PEIVAKRLDRELSSIIKHGFSVLYIIAQKLVSNSEE 882

Query: 370  NNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------ 399
            +   VG  RGS   S  A    I++++PL                               
Sbjct: 883  HGYLVG-SRGSVGSSFVASMAGISEVNPLAPHYVCPKCKHSEFITDGSYGSGFDLPAKNC 941

Query: 400  -----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
                         + FE FL  D    PD D++F  + +    RY +  +G   V +  T
Sbjct: 942  PNCGIEMRRDGHDIPFETFLGFDGDKAPDIDLNFSGEYQSSAHRYTEELFGRANVFKAGT 1001

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
              ++  K A                                  + D +  +     +   
Sbjct: 1002 ISTVAEKTAFGYA---------------------------KHFLEDRNESQNPAEEN--- 1031

Query: 509  DRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWI 563
                 +++   G+ R    H  G+V    D  +    P+     S   D+  T F+   +
Sbjct: 1032 ----RLAKGCTGVKRTTGQHPGGMVVVPSDYDVYDFTPVQHPADSADSDVITTHFDFHSL 1087

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQL 623
                      L L  L  +  +L    +    + ++ +P  D +   + T    LG+   
Sbjct: 1088 HDT------ILKLDELGHVVPTLYKHLEDLTGIKIADVPTTDPDVIRMCTDVSVLGVT-K 1140

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
            E         G+        I ++   +P    + +  +   +G +  +     +     
Sbjct: 1141 EDVYCPTGSLGIPEMGTNFTIGMLMDAKPTKFSDFLQISGLSHGTDVWLGNAKDLIENKT 1200

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
             T   +I     +    L  G    +A  +     K    +        I     + + +
Sbjct: 1201 CTISEVIGTRDSIMTYLLYKGVEPKQAFQIMEDTRKGKAPK--TFTPERIQMLKDHNVPQ 1258

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--- 800
                +  ++      Y F K+HAAAY + + +  W K H P+EF +   T+   + +   
Sbjct: 1259 WYIDSCLKI-----KYMFPKAHAAAYVIAAIKLGWFKLHKPLEFYSTYFTVRGGDFDADL 1313

Query: 801  ------------------------------KIKKFCQDARQFNIQIMPPSVNT-PCVDFK 829
                                           I     +      + +P  +     V + 
Sbjct: 1314 AVRGIAAVRNRIEELRALGNDRSKKENDLYDILLIVNEMMSRGYEFLPIDLYKSHAVKYL 1373

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            + D +I     A+ GVG   A  + E +  + F S+E+F ++  + K     LES+   G
Sbjct: 1374 IEDGKIRIPFGALSGVGEAAAMSLYETAQARDFVSIEEFQNKCGASKTIVDTLESIGALG 1433

Query: 890  AL 891
            AL
Sbjct: 1434 AL 1435



 Score = 82.5 bits (202), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 2/100 (2%)

Query: 5   LEKSPS-FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA- 62
           ++ +P   V L +H++ S ++   S ++++ +  A    AIAITD     +  E      
Sbjct: 332 MDNAPKKRVELHMHTTMSAMDAVSSASDLIARAQAWGHHAIAITDHGVAQAFPEAMNAIG 391

Query: 63  CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
            A   + I GC+  +      +    G+T      +I++ 
Sbjct: 392 KAKDFKVIYGCEAYVVNDIAERKILIGETDKTVNDTIIIF 431


>gi|259501583|ref|ZP_05744485.1| DNA polymerase III [Lactobacillus iners DSM 13335]
 gi|302191443|ref|ZP_07267697.1| DNA polymerase III, alpha subunit ( type) [Lactobacillus iners AB-1]
 gi|259167101|gb|EEW51596.1| DNA polymerase III [Lactobacillus iners DSM 13335]
          Length = 1420

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 147/906 (16%), Positives = 288/906 (31%), Gaps = 198/906 (21%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + +L     G + + +LVS         +  R  LS L+ +  EGL+  +G   G +  
Sbjct: 595  HMTVLAINKVGLKNMYKLVSLASTK-YFYRLPRTPLSELKRLH-EGLLYGSGCLQGDVFI 652

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-----HRGYD---------RYRESQVVQL 203
            +          ++   +        ++ +Q      H   D         +   + + +L
Sbjct: 653  SMMQKGYDATREKARIYD-------FLEVQPPAAYQHLLDDKLIKDKKELQEIITNIYKL 705

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                 +P+VAT+++ ++ ++D     +L++         K+        Y          
Sbjct: 706  GKELGIPVVATSDAHYIDKKDAIYRKILLSAQ--KANRGKNYELPDLHFYTTQEMLDAFS 763

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            F D   A E  ++     +  ++   PI         ++  KE E    +KA        
Sbjct: 764  FLDPKIAEEIVIKNTNMIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHE------ 817

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                +      +  + RL++EL  I    ++  +LI    +  + K+   VG  RGS   
Sbjct: 818  ----LYGNPLPKIVKDRLEYELKSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGSVGS 872

Query: 384  SVTAYALTITDIDPLR-----------------------------------------FSL 402
            S+ A    IT+++PL                                            +
Sbjct: 873  SLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKKCPKCNADLAKDGQDI 932

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             F  FL      +PD D++F  D +     Y++  +G +   +  T G++  K A   V 
Sbjct: 933  PFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAGTIGTVADKIAYGYV- 991

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
                                       +   D++  +           L  +SQ   G+ 
Sbjct: 992  ---------------------------KHYEDENELKLRNAE------LDRLSQGASGVK 1018

Query: 523  RHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R    H AGIV    D  +    P+             T F+   I    ++KFD LG  
Sbjct: 1019 RTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHSIHD-NILKFDILGHD 1077

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQL 623
              T+++     + Q    VD   IP  D     L +                 TLG+ + 
Sbjct: 1078 DPTMIR-----MLQDLSGVDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTGTLGVPEF 1132

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +R  LE  +P    +++ +  L                N ++ I      +  ++ 
Sbjct: 1133 GTKFVRGMLEETKPTTFSELLQISGLSHG-------TDVWLGNAEDLINKGICKLKNVIG 1185

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
                ++           +        A     ++        +         +    I  
Sbjct: 1186 CRDNIMT--------DLIHWDVPPEVAFSTMESVRHGKGISDEN----MAILSKNKNIPD 1233

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                +  ++      Y F K+HA AY +++ + AW K +YPV +  + +++  D  + + 
Sbjct: 1234 WYIQSCLKI-----KYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYLSVRADLFDIVA 1288

Query: 804  K---------------------------------FCQDARQFNIQIMPPSVNTPCV-DFK 829
                                                 +  +  I I    +      +FK
Sbjct: 1289 MSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLERGININMVDIEKSDALNFK 1348

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            +  ++ I      + G+G   A+ I+ A  ++PF S ED   R    K+++ ++E     
Sbjct: 1349 ILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLSIR---GKVSQTIMEYFENN 1405

Query: 889  GALDCF 894
            G LD  
Sbjct: 1406 GVLDGL 1411



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   S  + +       Q AIAITD  ++ +  E        G++ I 
Sbjct: 317 VELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAFPEAYVAGKKNGLKIIY 376

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 377 GYEANMINDQALLVLNPANMDYRGQEYVIF 406


>gi|312871361|ref|ZP_07731457.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LEAF 3008A-a]
 gi|312872402|ref|ZP_07732471.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LEAF 2062A-h1]
 gi|311091984|gb|EFQ50359.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LEAF 2062A-h1]
 gi|311093113|gb|EFQ51461.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LEAF 3008A-a]
          Length = 1420

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 147/906 (16%), Positives = 288/906 (31%), Gaps = 198/906 (21%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + +L     G + + +LVS         +  R  LS L+ +  EGL+  +G   G +  
Sbjct: 595  HMTVLAINKVGLKNMYKLVSLASTK-YFYRLPRTPLSELKRLH-EGLLYGSGCLQGDVFI 652

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-----HRGYD---------RYRESQVVQL 203
            +          ++   +        ++ +Q      H   D         +   + + +L
Sbjct: 653  SMMQKGYDATREKARIYD-------FLEVQPPAAYQHLLDDKLIKDKKELQEIITNIYKL 705

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                 +P+VAT+++ ++ ++D     +L++         K+        Y          
Sbjct: 706  GKELGIPVVATSDAHYIDKKDAIYRKILLSAQ--KANRGKNYELPDLHFYTTQEMLDAFS 763

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            F D   A E  ++     +  ++   PI         ++  KE E    +KA        
Sbjct: 764  FLDPKIAEEIVIKNTNMIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHE------ 817

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                +      +  + RL++EL  I    ++  +LI    +  + K+   VG  RGS   
Sbjct: 818  ----LYGNPLPKIVKDRLEYELKSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGSVGS 872

Query: 384  SVTAYALTITDIDPLR-----------------------------------------FSL 402
            S+ A    IT+++PL                                            +
Sbjct: 873  SLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKKCPKCNADLAKDGQDI 932

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             F  FL      +PD D++F  D +     Y++  +G +   +  T G++  K A   V 
Sbjct: 933  PFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAGTIGTVADKIAYGYV- 991

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
                                       +   D++  +           L  +SQ   G+ 
Sbjct: 992  ---------------------------KHYEDENELKLRNAE------LDRLSQGASGVK 1018

Query: 523  RHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R    H AGIV    D  +    P+             T F+   I    ++KFD LG  
Sbjct: 1019 RTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHSIHD-NILKFDILGHD 1077

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQL 623
              T+++     + Q    VD   IP  D     L +                 TLG+ + 
Sbjct: 1078 DPTMIR-----MLQDLSGVDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTGTLGVPEF 1132

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +R  LE  +P    +++ +  L                N ++ I      +  ++ 
Sbjct: 1133 GTKFVRGMLEETKPTTFSELLQISGLSHG-------TDVWLGNAEDLINKGICKLKNVIG 1185

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
                ++           +        A     ++        +         +    I  
Sbjct: 1186 CRDNIMT--------DLIHWDVPPEVAFSTMESVRHGKGISDEN----MAILSKNKNIPD 1233

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                +  ++      Y F K+HA AY +++ + AW K +YPV +  + +++  D  + + 
Sbjct: 1234 WYIQSCLKI-----KYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYLSVRADLFDIVA 1288

Query: 804  K---------------------------------FCQDARQFNIQIMPPSVNTPCV-DFK 829
                                                 +  +  I I    +      +FK
Sbjct: 1289 MSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLERGININMVDIEKSDALNFK 1348

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            +  ++ I      + G+G   A+ I+ A  ++PF S ED   R    K+++ ++E     
Sbjct: 1349 ILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLSIR---GKVSQTIMEYFENN 1405

Query: 889  GALDCF 894
            G LD  
Sbjct: 1406 GVLDGL 1411



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   S  + +       Q AIAITD  ++ +  E        G++ I 
Sbjct: 317 VELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAFPEAYVAGKKNGLKIIY 376

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 377 GYEANMINDQALLVLNPANMDYRGQEYVIF 406


>gi|329767541|ref|ZP_08259064.1| DNA polymerase III [Gemella haemolysans M341]
 gi|328835875|gb|EGF85597.1| DNA polymerase III [Gemella haemolysans M341]
          Length = 1449

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 142/907 (15%), Positives = 288/907 (31%), Gaps = 193/907 (21%)

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            +LV  A+G + L  LVS             I  S L++   E L++ +G     +     
Sbjct: 624  ILVKNAKGLKDLFRLVSYSCTKYLNSAKPTIPRSLLEQY-REDLLIGSGNGDNEVFEELL 682

Query: 161  FNSSQVAEKRLLTFKKLFGDRLYVNLQ--RH------------RGYDRYRESQVVQLAYT 206
             +     E  +  +        Y+ +Q   H                     ++++LA  
Sbjct: 683  NSKEAKVENIIDFYD-------YIEIQPKHHYANFIRNERISDNAELEEILKKLIKLAEK 735

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
             E  +VAT +  +L E  +    +L               +        +       + D
Sbjct: 736  KEKIVVATGDCYYLDEYQHVYRQIL--RLTVKSNPGAHDLKPMATFLTTDEMLKEFSYLD 793

Query: 267  LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
                 E  +E   + + ++++  P+  +      +       +E+RN +         + 
Sbjct: 794  EQLREEIVIENTHKINDMIELVIPLKDKLYTPNIEG----AADEVRNLSYDMAHKIYGEQ 849

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                    +   +RL+ EL+ I    FS  +LI    ++ +  +   VG  RGS   S+ 
Sbjct: 850  L------PEIVEKRLEKELSSIIGNGFSVVYLISHKLVKKSLDDGYLVG-SRGSVGSSLV 902

Query: 387  AYALTITDIDPLR-----------------------------------------FSLLFE 405
            A  + IT+++PL                                            + FE
Sbjct: 903  ATMMEITEVNPLAPHYVCPKCKHSEFFLNAEYASGFDLPNKNCPHCDVKMIKDGQDIPFE 962

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
             FL  +   +PD D++F  + +     + +  +G + V +  T  ++  K A        
Sbjct: 963  TFLGFNGDKVPDIDLNFSGEYQATAHNFTKEIFGEDYVYRAGTISTVAEKTAYS-----F 1017

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
               Y + + + K   +                             +  I+   EG  R  
Sbjct: 1018 TRDYYEKNEVEKRSID-----------------------------IERIAAGCEGSKRTT 1048

Query: 526  STHAAGI--VIGDRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
              H  GI  V  D  +    P       +      T F+   I    ++KFD LG    T
Sbjct: 1049 GQHPGGILVVPNDMDIFDFTPYQFPADDETSPWRTTHFDFHSIHD-NILKFDILGHDDPT 1107

Query: 581  LLQKSLDFLAQRGVKVDLSLIPFDDHETY-----------HLLTTKGTLGIFQLESSGMR 629
            +++K  D          + +   +    +            + +  GT GI +  ++ + 
Sbjct: 1108 MIRKLQDLSG--IDPKTIDVSDPEVMGIFSTVEALGVTRDQVDSASGTFGIPEFGTNFVI 1165

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
            Q L+  +P    +++ +  L                N +E I +    +  ++     ++
Sbjct: 1166 QMLDDTKPTTYSELVQISGLSHG-------TDVWLGNAQELIKNGTCELKDVIGCRDDIM 1218

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +Y         + +G     +  +  ++ K      D     F      N + +    + 
Sbjct: 1219 VYL--------IHAGLEEGLSFKIMESVRKGKGLTED-----FEKAMIDNNVPEWYIDSC 1265

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI------- 802
             ++      Y F K+HA AY +++ + AW K H P+ +  A  ++   + + I       
Sbjct: 1266 KKI-----KYMFPKAHACAYVLMALRIAWFKVHQPLTYYCAYYSVRASDFDIITVVKGAE 1320

Query: 803  ---------------------------KKFCQDARQFNIQIMPPSVNTPC-VDFKVGDNR 834
                                        +   +  +         +      D+ +  N 
Sbjct: 1321 TLKAKIKEIKTTDKNELSNKDKDALVSYEIANEMMERGFTFSKVDLEKSASHDYIIEGNT 1380

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +    + + G+G   A  I++A  +K F S+EDF  R     ++  V+E L   G L   
Sbjct: 1381 LIPPFSIVPGLGDNVANKIVQAREEKAFLSIEDFSKR---GSVSSTVVEYLREMGTLKGL 1437

Query: 895  GYSRMQL 901
               + QL
Sbjct: 1438 -PEKAQL 1443



 Score = 66.4 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 8/94 (8%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS-QKA---CAAGI 67
           + L  H+  S LEG  S    + +       AIA TDT   +  ++   +         I
Sbjct: 343 IELNTHTKMSQLEGISSAKEYIARAMDWGHEAIAFTDT---YG-VQAYPEICLSSKGKDI 398

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           +PI G    I        TN           +V 
Sbjct: 399 KPIYGLNAFIMDDSITATTNPKNLKLKDATYVVF 432


>gi|325911796|ref|ZP_08174200.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners UPII 143-D]
 gi|325476302|gb|EGC79464.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners UPII 143-D]
          Length = 1416

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 147/906 (16%), Positives = 288/906 (31%), Gaps = 198/906 (21%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + +L     G + + +LVS         +  R  LS L+ +  EGL+  +G   G +  
Sbjct: 591  HMTVLAINKVGLKNMYKLVSLASTK-YFYRLPRTPLSELKRLH-EGLLYGSGCLQGDVFI 648

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-----HRGYD---------RYRESQVVQL 203
            +          ++   +        ++ +Q      H   D         +   + + +L
Sbjct: 649  SMMQKGYDATREKARIYD-------FLEVQPPAAYQHLLDDKLIKDKKELQEIITNIYKL 701

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                 +P+VAT+++ ++ ++D     +L++         K+        Y          
Sbjct: 702  GKELGIPVVATSDAHYIDKKDAIYRKILLSAQ--KANRGKNYELPDLHFYTTQEMLDAFS 759

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            F D   A E  ++     +  ++   PI         ++  KE E    +KA        
Sbjct: 760  FLDPKIAEEIVIKNTNMIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHE------ 813

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                +      +  + RL++EL  I    ++  +LI    +  + K+   VG  RGS   
Sbjct: 814  ----LYGNPLPKIVKDRLEYELKSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGSVGS 868

Query: 384  SVTAYALTITDIDPLR-----------------------------------------FSL 402
            S+ A    IT+++PL                                            +
Sbjct: 869  SLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKKCPKCNADLAKDGQDI 928

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             F  FL      +PD D++F  D +     Y++  +G +   +  T G++  K A   V 
Sbjct: 929  PFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAGTIGTVADKIAYGYV- 987

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
                                       +   D++  +           L  +SQ   G+ 
Sbjct: 988  ---------------------------KHYEDENELKLRNAE------LDRLSQGASGVK 1014

Query: 523  RHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R    H AGIV    D  +    P+             T F+   I    ++KFD LG  
Sbjct: 1015 RTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHSIHD-NILKFDILGHD 1073

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQL 623
              T+++     + Q    VD   IP  D     L +                 TLG+ + 
Sbjct: 1074 DPTMIR-----MLQDLSGVDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTGTLGVPEF 1128

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +R  LE  +P    +++ +  L                N ++ I      +  ++ 
Sbjct: 1129 GTKFVRGMLEETKPTTFSELLQISGLSHG-------TDVWLGNAEDLINKGICKLKNVIG 1181

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
                ++           +        A     ++        +         +    I  
Sbjct: 1182 CRDNIMT--------DLIHWDVPPEVAFSTMESVRHGKGISDEN----MAILSKNKNIPD 1229

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                +  ++      Y F K+HA AY +++ + AW K +YPV +  + +++  D  + + 
Sbjct: 1230 WYIQSCLKI-----KYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYLSVRADLFDIVA 1284

Query: 804  K---------------------------------FCQDARQFNIQIMPPSVNTPCV-DFK 829
                                                 +  +  I I    +      +FK
Sbjct: 1285 MSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLERGININMVDIEKSDALNFK 1344

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            +  ++ I      + G+G   A+ I+ A  ++PF S ED   R    K+++ ++E     
Sbjct: 1345 ILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLSIR---GKVSQTIMEYFENN 1401

Query: 889  GALDCF 894
            G LD  
Sbjct: 1402 GVLDGL 1407



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   S  + +       Q AIAITD  ++ +  E        G++ I 
Sbjct: 313 VELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAFPEAYVAGKKNGLKIIY 372

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 373 GYEANMINDQALLVLNPANMDYRGQEYVIF 402


>gi|315653430|ref|ZP_07906352.1| DNA polymerase III [Lactobacillus iners ATCC 55195]
 gi|315489355|gb|EFU78995.1| DNA polymerase III [Lactobacillus iners ATCC 55195]
          Length = 1424

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 147/906 (16%), Positives = 288/906 (31%), Gaps = 198/906 (21%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + +L     G + + +LVS         +  R  LS L+ +  EGL+  +G   G +  
Sbjct: 599  HMTVLAINKVGLKNMYKLVSLASTK-YFYRLPRTPLSELKRLH-EGLLYGSGCLQGDVFI 656

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-----HRGYD---------RYRESQVVQL 203
            +          ++   +        ++ +Q      H   D         +   + + +L
Sbjct: 657  SMMQKGYDATREKARIYD-------FLEVQPPATYQHLLDDKLIKDKKELQEIITNIYKL 709

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                 +P+VAT+++ ++ ++D     +L++         K+        Y          
Sbjct: 710  GKELGIPVVATSDAHYIDKKDAIYRKILLSAQ--KANRGKNYELPDLHFYTTQEMLDAFS 767

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            F D   A E  ++     +  ++   PI         ++  KE E    +KA        
Sbjct: 768  FLDPKIAEEIVIKNTNMIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHE------ 821

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                +      +  + RL++EL  I    ++  +LI    +  + K+   VG  RGS   
Sbjct: 822  ----LYGNPLPKIVKDRLEYELKSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGSVGS 876

Query: 384  SVTAYALTITDIDPLR-----------------------------------------FSL 402
            S+ A    IT+++PL                                            +
Sbjct: 877  SLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKKCPKCNADLAKDGQDI 936

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             F  FL      +PD D++F  D +     Y++  +G +   +  T G++  K A   V 
Sbjct: 937  PFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAGTIGTVADKIAYGYV- 995

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
                                       +   D++  +           L  +SQ   G+ 
Sbjct: 996  ---------------------------KHYEDENELKLRNAE------LDRLSQGASGVK 1022

Query: 523  RHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R    H AGIV    D  +    P+             T F+   I    ++KFD LG  
Sbjct: 1023 RTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHSIHD-NILKFDILGHD 1081

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQL 623
              T+++     + Q    VD   IP  D     L +                 TLG+ + 
Sbjct: 1082 DPTMIR-----MLQDLSGVDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTGTLGVPEF 1136

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +R  LE  +P    +++ +  L                N ++ I      +  ++ 
Sbjct: 1137 GTKFVRGMLEETKPTTFSELLQISGLSHG-------TDVWLGNAEDLINKGICKLKNVIG 1189

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
                ++           +        A     ++        +         +    I  
Sbjct: 1190 CRDNIMT--------DLIHWDVPPEVAFSTMESVRHGKGISDEN----MAILSKNKNIPD 1237

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                +  ++      Y F K+HA AY +++ + AW K +YPV +  + +++  D  + + 
Sbjct: 1238 WYIQSCLKI-----KYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYLSVRADLFDIVA 1292

Query: 804  K---------------------------------FCQDARQFNIQIMPPSVNTPCV-DFK 829
                                                 +  +  I I    +      +FK
Sbjct: 1293 MSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLERGININMVDIEKSDALNFK 1352

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            +  ++ I      + G+G   A+ I+ A  ++PF S ED   R    K+++ ++E     
Sbjct: 1353 ILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLSIR---GKVSQTIMEYFENN 1409

Query: 889  GALDCF 894
            G LD  
Sbjct: 1410 GVLDGL 1415



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   S  + +       Q AIAITD  ++ +  E        G++ I 
Sbjct: 321 VELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAFPEAYVAGKKNGLKIIY 380

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 381 GYEANMINDQALLVLNPANMDYRGQEYVIF 410


>gi|312875787|ref|ZP_07735779.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LEAF 2053A-b]
 gi|311088691|gb|EFQ47143.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LEAF 2053A-b]
          Length = 1424

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 147/906 (16%), Positives = 288/906 (31%), Gaps = 198/906 (21%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + +L     G + + +LVS         +  R  LS L+ +  EGL+  +G   G +  
Sbjct: 599  HMTVLAINKVGLKNMYKLVSLASTK-YFYRLPRTPLSELKRLH-EGLLYGSGCLQGDVFI 656

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-----HRGYD---------RYRESQVVQL 203
            +          ++   +        ++ +Q      H   D         +   + + +L
Sbjct: 657  SMMQKGYDATREKARIYD-------FLEVQPPAAYQHLLDDKLIKDKKELQEIITNIYKL 709

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                 +P+VAT+++ ++ ++D     +L++         K+        Y          
Sbjct: 710  GKELGIPVVATSDAHYIDKKDAIYRKILLSAQ--KANRGKNYELPDLHFYTTQEMLDAFS 767

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            F D   A E  ++     +  ++   PI         ++  KE E    +KA        
Sbjct: 768  FLDPKIAEEIVIKNTNMIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHE------ 821

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                +      +  + RL++EL  I    ++  +LI    +  + K+   VG  RGS   
Sbjct: 822  ----LYGNPLPKIVKDRLEYELKSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGSVGS 876

Query: 384  SVTAYALTITDIDPLR-----------------------------------------FSL 402
            S+ A    IT+++PL                                            +
Sbjct: 877  SLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKKCPKCNADLAKDGQDI 936

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             F  FL      +PD D++F  D +     Y++  +G +   +  T G++  K A   V 
Sbjct: 937  PFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAGTIGTVADKIAYGYV- 995

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
                                       +   D++  +           L  +SQ   G+ 
Sbjct: 996  ---------------------------KHYEDENELKLRNAE------LDRLSQGASGVK 1022

Query: 523  RHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R    H AGIV    D  +    P+             T F+   I    ++KFD LG  
Sbjct: 1023 RTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHSIHD-NILKFDILGHD 1081

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQL 623
              T+++     + Q    VD   IP  D     L +                 TLG+ + 
Sbjct: 1082 DPTMIR-----MLQDLSGVDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTGTLGVPEF 1136

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +R  LE  +P    +++ +  L                N ++ I      +  ++ 
Sbjct: 1137 GTKFVRGMLEETKPTTFSELLQISGLSHG-------TDVWLGNAEDLINKGICKLKNVIG 1189

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
                ++           +        A     ++        +         +    I  
Sbjct: 1190 CRDNIMT--------DLIHWDVPPEVAFSTMESVRHGKGISDEN----MAILSKNKNIPD 1237

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                +  ++      Y F K+HA AY +++ + AW K +YPV +  + +++  D  + + 
Sbjct: 1238 WYIQSCLKI-----KYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYLSVRADLFDIVA 1292

Query: 804  K---------------------------------FCQDARQFNIQIMPPSVNTPCV-DFK 829
                                                 +  +  I I    +      +FK
Sbjct: 1293 MSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLERGININMVDIEKSDALNFK 1352

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            +  ++ I      + G+G   A+ I+ A  ++PF S ED   R    K+++ ++E     
Sbjct: 1353 ILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLSIR---GKVSQTIMEYFENN 1409

Query: 889  GALDCF 894
            G LD  
Sbjct: 1410 GVLDGL 1415



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   S  + +       Q AIAITD  ++ +  E        G++ I 
Sbjct: 321 VELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAFPEAYVAGKKNGLKIIY 380

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 381 GYEANMINDQALLVLNPANMDYRGQEYVIF 410


>gi|309807200|ref|ZP_07701174.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LactinV 03V1-b]
 gi|308166421|gb|EFO68626.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LactinV 03V1-b]
          Length = 1424

 Score =  191 bits (486), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 147/906 (16%), Positives = 288/906 (31%), Gaps = 198/906 (21%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + +L     G + + +LVS         +  R  LS L+ +  EGL+  +G   G +  
Sbjct: 599  HMTVLAINKVGLKNMYKLVSLASTK-YFYRLPRTPLSELKRLH-EGLLYGSGCLQGDVFI 656

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-----HRGYD---------RYRESQVVQL 203
            +          ++   +        ++ +Q      H   D         +   + + +L
Sbjct: 657  SMMQKGYDATREKARIYD-------FLEVQPPAAYQHLLDDKLIKDKKELQEIITNIYKL 709

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                 +P+VAT+++ ++ ++D     +L++         K+        Y          
Sbjct: 710  GKELGIPVVATSDAHYIDKKDAIYRKILLSAQ--KANRGKNYELPDLHFYTTQEMLDAFS 767

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            F D   A E  ++     +  ++   PI         ++  KE E    +KA        
Sbjct: 768  FLDPKIAEEIVIKNTNMIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHE------ 821

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                +      +  + RL++EL  I    ++  +LI    +  + K+   VG  RGS   
Sbjct: 822  ----LYGNPLPKIVKDRLEYELKSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGSVGS 876

Query: 384  SVTAYALTITDIDPLR-----------------------------------------FSL 402
            S+ A    IT+++PL                                            +
Sbjct: 877  SLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKKCPKCNADLAKDGQDI 936

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             F  FL      +PD D++F  D +     Y++  +G +   +  T G++  K A   V 
Sbjct: 937  PFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAGTIGTVADKIAYGYV- 995

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
                                       +   D++  +           L  +SQ   G+ 
Sbjct: 996  ---------------------------KHYEDENELKLRNAE------LDRLSQGASGVK 1022

Query: 523  RHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R    H AGIV    D  +    P+             T F+   I    ++KFD LG  
Sbjct: 1023 RTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHSIHD-NILKFDILGHD 1081

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQL 623
              T+++     + Q    VD   IP  D     L +                 TLG+ + 
Sbjct: 1082 DPTMIR-----MLQDLSGVDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTGTLGVPEF 1136

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +R  LE  +P    +++ +  L                N ++ I      +  ++ 
Sbjct: 1137 GTKFVRGMLEETKPTTFSELLQISGLSHG-------TDVWLGNAEDLINKGICKLKNVIG 1189

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
                ++           +        A     ++        +         +    I  
Sbjct: 1190 CRDNIMT--------DLIHWDVPPEVAFSTMESVRHGKGISDEN----MAILSKNKNIPD 1237

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                +  ++      Y F K+HA AY +++ + AW K +YPV +  + +++  D  + + 
Sbjct: 1238 WYIQSCLKI-----KYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYLSVRADLFDIVA 1292

Query: 804  K---------------------------------FCQDARQFNIQIMPPSVNTPCV-DFK 829
                                                 +  +  I I    +      +FK
Sbjct: 1293 MSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLERGININMVDIEKSDALNFK 1352

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            +  ++ I      + G+G   A+ I+ A  ++PF S ED   R    K+++ ++E     
Sbjct: 1353 ILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLSIR---GKVSQTIMEYFENN 1409

Query: 889  GALDCF 894
            G LD  
Sbjct: 1410 GVLDGL 1415



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   S  + +       Q AIAITD  ++ +  E        G++ I 
Sbjct: 321 VELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAFPEAYVAGKKNGLKIIY 380

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 381 GYEANMINDQALLVLNPANMDYRGQEYVIF 410


>gi|116513078|ref|YP_811985.1| DNA polymerase III PolC [Lactococcus lactis subsp. cremoris SK11]
 gi|116108732|gb|ABJ73872.1| DNA polymerase III catalytic subunit, PolC type [Lactococcus lactis
            subsp. cremoris SK11]
          Length = 1635

 Score =  191 bits (486), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 139/908 (15%), Positives = 280/908 (30%), Gaps = 182/908 (20%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + L   T EG + L ++VS   +        R+  S L E   EGL++ +    G +  
Sbjct: 786  HVTLYAKTQEGLKNLFKIVSFENVK-YYAGLPRLPRSVL-EANREGLLVGSACEVGEVFD 843

Query: 158  AFFFNSSQVAEKRLLTF--KKLFGDRLYVNLQRHRG-----YDRYRESQVVQLAYTHELP 210
            A    + +   +    +   ++F   LY +L                  ++++  T   P
Sbjct: 844  AAINKTFEETLEIAKFYDFIEVFPPALYRSLVVGGSFKSEKELEQTLKDLIKIGKTLVKP 903

Query: 211  LVATNNSLFLSEEDYEAHDVLMAV---------AHSTVVSQKDRPRVTPDHYLKNRSEMV 261
            ++AT N  +L+ ED    ++++                   K  P         +     
Sbjct: 904  VLATGNLHYLNPEDAIYREIIVRSLGLGAEINWTQGHGEHAKPLPLPEAHFRTTDEMLEA 963

Query: 262  SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK-ECDDIQKEEENELRNKAVAGLE 320
              F D   A E  ++  ++ +    V  P+           D  +  E  +         
Sbjct: 964  FSFLDEKTAREIVIDNTQKMADEFDVLTPVRDDLYTPKMVFDGGETSEERIVRLTYEKAH 1023

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                               RL+ EL  I    FS  ++I  + ++ + +    VG  RGS
Sbjct: 1024 EWYGNPL------PDIIDARLEKELRSILGNGFSVVYIISQELVKRSNERGYIVG-SRGS 1076

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S+ A  + IT+++PL                                          
Sbjct: 1077 VGSSLVATMIGITEVNPLAPHYRCPECQYFECYDDGSFGSGYDMPDKNCPKCDHKLIKDG 1136

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + FE FL      +PD D++F  D +      V++ +G +   +  T G++  K A  
Sbjct: 1137 HDIPFETFLGFKGDKVPDIDLNFSGDDQPLAHLDVRDIFGEDYAFRAGTIGTVAEKTAFG 1196

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V +  +  Y Q     +                                 +  ++    
Sbjct: 1197 FV-KGYERDYDQFYGNAE---------------------------------IDRLAAGST 1222

Query: 520  GLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H  GI+       +    P+         +   T F+   I    ++K D L
Sbjct: 1223 GVKRTTGQHPGGIIVIPNYMDVYDFSPVQFPADDVNAEWQTTHFDFHAIHD-NILKLDIL 1281

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGI 620
            G    T+++K      Q    +    IP DD     L T                 TLGI
Sbjct: 1282 GHDDPTMIRK-----LQSLSGIVPQDIPMDDPGVMKLFTGTESLGLTEEQLGVKLGTLGI 1336

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             ++ +      +   +P    D++ +  L                N ++ I S    +  
Sbjct: 1337 PEMGTFTSMNMIAEAKPKNFADLLQISGLSHG-------TDVWSGNAQDLIRSGIADLSS 1389

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
            ++     +++Y         +  G     A  +   + K +  ++  ++      A +  
Sbjct: 1390 VIGCRDDIMVYL--------IHKGLENGLAFTIMERVRKGMWNKIPAEEREKYVEAMREH 1441

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
                  +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A  ++     +
Sbjct: 1442 EVPEWYIESCSKI----KYMFPKAHAAAYIMMALRVAYFKVHHPIFYYCAWFSIRATAFD 1497

Query: 801  KIKK---------------------------------FCQDARQFNIQIMPPSVNTPCV- 826
                                                  C +  +         +      
Sbjct: 1498 IGVMGAGLEAVKSKMKEIKDKGFEATNVETNLYTTLELCNEMLERGFTFGKIDLYRSEAT 1557

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            +F +  + +      + G+G   A+ I+ A A+  F S  +   R     +++ ++E++ 
Sbjct: 1558 EFVIDGDTLIPPFVTMDGLGENVAKQIVAARAEGEFLSKMELRKR---GGVSQTIIENMT 1614

Query: 887  FAGALDCF 894
              G L+  
Sbjct: 1615 NMGVLEGM 1622



 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   S ++++ + A     AIAITD   L S  E        G++ I 
Sbjct: 507 VEFHAHTNMSQMDAIPSASSLVAQAAKWGHKAIAITDHGGLQSFPEAHSAGKKNGVKIIY 566

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       + N+          +V 
Sbjct: 567 GVEANLVEDKIPIVFNETDVDMYESTYVVF 596


>gi|309805699|ref|ZP_07699739.1| DNA polymerase III subunit alpha domain protein [Lactobacillus iners
            LactinV 09V1-c]
 gi|308164952|gb|EFO67195.1| DNA polymerase III subunit alpha domain protein [Lactobacillus iners
            LactinV 09V1-c]
          Length = 393

 Score =  191 bits (486), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 106/362 (29%), Positives = 184/362 (50%), Gaps = 17/362 (4%)

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
               P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   EM K    F
Sbjct: 3    YPDPILINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSMEMKKIGVDF 62

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            ++ A + G S   A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP +F  A +
Sbjct: 63   VNRAVQQGHSAAAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYPKQFYVALL 122

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTAR 851
               + + +K+ K+  D +  NI+I  P +N    +F + D   I   L +I G+      
Sbjct: 123  NSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSIIGLRMDFVE 182

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
             IM     +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL S +++   
Sbjct: 183  QIMNL--QRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLASYEDLLIC 240

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
             +      +  +  +F   +    D        + +++ + E E  VLGF     P+   
Sbjct: 241  IK-----MSGGNNVLFQALEPKELD------IKMPSNAQKEEWETSVLGFSPQIDPILAA 289

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +   +K G K + +      G ++     ++  +   T+   ++ +  F++  +  +   
Sbjct: 290  QIYAKKYGFKPFSDFTFYDEGVSV---GKMMDIKVITTKNNKKMAFAKFNDLHETVDFVI 346

Query: 1032 FP 1033
            FP
Sbjct: 347  FP 348


>gi|312873343|ref|ZP_07733396.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LEAF 2052A-d]
 gi|311091133|gb|EFQ49524.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners LEAF 2052A-d]
          Length = 1420

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 147/906 (16%), Positives = 288/906 (31%), Gaps = 198/906 (21%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + +L     G + + +LVS         +  R  LS L+ +  EGL+  +G   G +  
Sbjct: 595  HMTVLAINKVGLKNMYKLVSLASTK-YFYRLPRTPLSELKRLH-EGLLYGSGCLQGDVFI 652

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-----HRGYD---------RYRESQVVQL 203
            +          ++   +        ++ +Q      H   D         +   + + +L
Sbjct: 653  SMMQKGYDATREKARIYD-------FLEVQPPAAYQHLLDDKLIKDKKELQEIITNIYKL 705

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                 +P+VAT+++ ++ ++D     +L++         K+        Y          
Sbjct: 706  GKELGIPVVATSDAHYIDKKDAIYRKILLSAQ--KANRGKNYELPDLHFYTTQEMLDAFS 763

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            F D   A E  ++     +  ++   PI         ++  KE E    +KA        
Sbjct: 764  FLDPKIAEEIVIKNTNIIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHE------ 817

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                +      +  + RL++EL  I    ++  +LI    +  + K+   VG  RGS   
Sbjct: 818  ----LYGNPLPKIVKDRLEYELKSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGSVGS 872

Query: 384  SVTAYALTITDIDPLR-----------------------------------------FSL 402
            S+ A    IT+++PL                                            +
Sbjct: 873  SLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKKCPKCNADLAKDGQDI 932

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             F  FL      +PD D++F  D +     Y++  +G +   +  T G++  K A   V 
Sbjct: 933  PFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAGTIGTVADKIAYGYV- 991

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
                                       +   D++  +           L  +SQ   G+ 
Sbjct: 992  ---------------------------KHYEDENELKLRNAE------LDRLSQGASGVK 1018

Query: 523  RHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R    H AGIV    D  +    P+             T F+   I    ++KFD LG  
Sbjct: 1019 RTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHSIHD-NILKFDILGHD 1077

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQL 623
              T+++     + Q    VD   IP  D     L +                 TLG+ + 
Sbjct: 1078 DPTMIR-----MLQDLSGVDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTGTLGVPEF 1132

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +R  LE  +P    +++ +  L                N ++ I      +  ++ 
Sbjct: 1133 GTKFVRGMLEETKPTTFSELLQISGLSHG-------TDVWLGNAEDLINKGICKLKNVIG 1185

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
                ++           +        A     ++        +         +    I  
Sbjct: 1186 CRDNIMT--------DLIHWDVPPEVAFSTMESVRHGKGISDEN----MAILSKNKNIPD 1233

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                +  ++      Y F K+HA AY +++ + AW K +YPV +  + +++  D  + + 
Sbjct: 1234 WYIQSCLKI-----KYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYLSVRADLFDIVA 1288

Query: 804  K---------------------------------FCQDARQFNIQIMPPSVNTPCV-DFK 829
                                                 +  +  I I    +      +FK
Sbjct: 1289 MSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLERGININMVDIEKSDALNFK 1348

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            +  ++ I      + G+G   A+ I+ A  ++PF S ED   R    K+++ ++E     
Sbjct: 1349 ILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLSIR---GKVSQTIMEYFENN 1405

Query: 889  GALDCF 894
            G LD  
Sbjct: 1406 GVLDGL 1411



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   S  + +       Q AIAITD  ++ +  E        G++ I 
Sbjct: 317 VELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAFPEAYVAGKKNGLKIIY 376

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 377 GYEANMINDQALLVLNPANMDYRGQEYVIF 406


>gi|291545334|emb|CBL18442.1| DNA polymerase III catalytic subunit, PolC type [Ruminococcus sp.
            SR1/5]
          Length = 1129

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 136/945 (14%), Positives = 288/945 (30%), Gaps = 148/945 (15%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            + F +      I        D+D  +     +            ++      G   L +L
Sbjct: 258  VRFVKMLEERDI-------FDVDEMNRQGAVSPDTIRKLPTYHAIVFARNETGRINLYKL 310

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS+ +L     +  R+  S L++   EGL++ +   +G + +A   N+      RL+ F 
Sbjct: 311  VSQSHLK-YYHRRPRVPKSVLEKY-REGLLVGSACEAGELYQALLRNAPDQEIARLVNFY 368

Query: 176  KLFGDRLYVNLQRHRGY-----DRYR------------ESQVVQLAYTHELPLVATNNSL 218
                   Y+ +Q          D                 ++V+L    + P+VAT +  
Sbjct: 369  D------YLEIQPLGNNAFMLADEKHDMINSEEDLKEINRKIVKLGEQFKKPVVATCDVH 422

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            F+  +D E +  ++   +    +    P                             E+ 
Sbjct: 423  FMDPQD-EVYRRIIMAGNGFSDADNQAPLYLRTTEEMLEEFSYLGSE-------KAEEVV 474

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
               +  +      +      +   + +  E +L+N                     +   
Sbjct: 475  ITNTNKIADMIEKISPIHPDKFPPVIENSEQDLKNICFTKAHEMYGDPL------PKIVE 528

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             RLD ELN I    ++  ++I    +  + ++   VG  RGS   S+ A    IT+++PL
Sbjct: 529  DRLDRELNSIISNGYAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSLAATMSGITEVNPL 587

Query: 399  R-FSLLFERFLNPDRMSMPDFDIDFCQ---DRRDEVIRYVQNKYGHERVAQI-------- 446
                L             P+          D  D++      +   E             
Sbjct: 588  PPHYLCPNPDCKYSDFDSPEVKKYAGMAGCDMPDKICPKCGARMNKEGFDIPFETFLGFK 647

Query: 447  ----ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
                       +     +  R  ++ + +            A   +   + +    R   
Sbjct: 648  GDKEPDIDLNFSGEYQANAHRYTEVIFGKGQTFKAGTIGTLAEKTAFGYVKNYYEERG-- 705

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQ 557
                    +  I +   G+ R    H  GI+       + +  P+         D+  T 
Sbjct: 706  -QHKRYCEINRIVKGCTGVRRTTGQHPGGIIVLPMGEEIEKFTPVQHPANDVNSDIITTH 764

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGT 617
            F+   I    L+K D LG    T+++     + +    +    +P D  +   L      
Sbjct: 765  FDYHSI-DGNLLKLDILGHDDPTMIR-----MLEDLTGISARTVPLDQRDVMSLFAGTQA 818

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
            LGI   +  G R    G+     +  + ++   +P    ++V      +G +  +    +
Sbjct: 819  LGISPEDIGGCRLGCLGIPEFGTDFAMQMLIDTKPKYFSDLVRIAGLSHGTDVWLGNAQV 878

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            +      T    I     + I  +  G     A  +  ++ K      +     +I    
Sbjct: 879  LIQNGTATISTAICTRDDIMIYLIGKGVESGLAFTIMESVRKGKGLREE-----WIQTMK 933

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            ++ +      +      K   Y F K+HAAAY +++Y+ AW K  +P+ + AA  ++   
Sbjct: 934  EHDVPDWYIWSC-----KLIKYMFPKAHAAAYVMMAYRIAWYKVFHPLAYYAAFFSIRAT 988

Query: 798  NVEK---------------------------------IKKFCQDARQFNIQIMPPSVNTP 824
            +                                      +  Q+        +P  +   
Sbjct: 989  SFSYELMCMGKERLEYYMAEIRKKGDAASKKEQDTLKDMRIVQEMYARGFDFVPIDLYKA 1048

Query: 825  CVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
                F++  +++  +L  I+G+G   A  +++A+A   F S +DF  R    K+++ V+ 
Sbjct: 1049 KAHRFQIIGDKLMPALDTIEGLGDKAAEAVVDAAAKGRFLSKDDFRDRT---KVSKTVI- 1104

Query: 884  SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
                                   ++            +   ++F 
Sbjct: 1105 -----------------------DLMDDMDLFGDIPQSNQMSLFD 1126



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 11/103 (10%)

Query: 5   LEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA- 62
           ++ SP   V L  H+  S ++G      ++ +       AIAITD   + S  E      
Sbjct: 1   MDTSPQKRVELHCHTKMSDMDGVSDAKALVKRAYEWGHKAIAITDHGVVQSFPEA-NHCF 59

Query: 63  --------CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
                     +  + + G +  +       +TN          
Sbjct: 60  DAWGGCVPKESDFKVLYGMEAYLVDDLKGMVTNSKGQRLDGDF 102


>gi|326692542|ref|ZP_08229547.1| DNA polymerase III, alpha subunit [Leuconostoc argentinum KCTC 3773]
          Length = 1437

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 140/934 (14%), Positives = 292/934 (31%), Gaps = 176/934 (18%)

Query: 55   ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            A    ++A            L    Q N  MT              LLV  A G + L E
Sbjct: 575  AWRLMKEAKER-------YDLTSHQQLNDHMTEGDAWKHGRPVHATLLVKNAVGLKHLYE 627

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
            LVSR  + +   +  RI  S L++   EGL++ TG + G +           A ++   +
Sbjct: 628  LVSRSNI-EFFARLPRIPRSVLEQ-HREGLLVGTGDTGGDVIVTLIEKGYDAALEKAAYY 685

Query: 175  KKLFGDRLYVNLQRH----------RGYDRYRESQVVQ----LAYTHELPLVATNNSLFL 220
                    ++ +Q               D  +   +++    +    + P+V T +  + 
Sbjct: 686  D-------FIEIQPTANYAPMIESGLIADTDKLHDILRDMVAIGDELDKPVVVTGDIKYT 738

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            + ED     +L+A       ++   P +      +   +   +  D   A +  ++    
Sbjct: 739  NPEDRIYRQILIATQPGNPQNRTTLPELHFKTTQELLDDYAFLGED--LAKKVVIDNTHV 796

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +  L+  AP+                  EL  + +   +                 + R
Sbjct: 797  IADSLEDVAPLKSGSYPPNIP----TAGEELTRRTLETAKKWYGDP------IPDVIQAR 846

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            +D EL  I    F+ +++I    ++ + K+   VG  RGS   S  A    IT+++P   
Sbjct: 847  IDQELKAIIGNGFAPHYMIAQRLVEKSNKDGYLVG-SRGSVGSSFVATMSGITEVNPFAP 905

Query: 400  -----------------------------------------FSLLFERFLNPDRMSMPDF 418
                                                      ++ FE F+      +PD 
Sbjct: 906  HYRSAHGDYFELADPKVYESGYDLPDKPDPNHPGEMLIGDGQNIPFETFMGFKGDKVPDI 965

Query: 419  DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
            D++F  D +     Y++  +G   V +  T  ++  K A   V    +            
Sbjct: 966  DLNFSGDYQPIAHNYMKVLFGEHNVYRAGTIATVAEKTAFGYVKGYERDH---------- 1015

Query: 479  IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD-- 536
                                            +  ++Q + G+ R    H  GI+I    
Sbjct: 1016 ------------------------DKHYRGTEVERLAQGITGVKRTTGQHPGGILIVPRE 1051

Query: 537  RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
              +    P+         +  +    ++   +   + L +  L     ++    +    +
Sbjct: 1052 YDVYDFTPVQYPADDQKSL--WQTTHMDYHSIH-DNLLKMDILGHDDPTMVRTLKDMSGI 1108

Query: 597  DLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
            D   IP +D     L T+   LG+   Q+ S      L     + +  ++      +P  
Sbjct: 1109 DPQSIPVNDPGVLSLFTSPKALGVTPEQIFSKTGTLGLPEFGTNFVRGMLEET---QPHN 1165

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
               ++  +   +G +  +     +      T G +I     +    +  G+  ++A  + 
Sbjct: 1166 YSELLQISGLSHGTDVWLGNANELIENGTATIGTVIGTRDKIMTDLINWGFPAADAFNVM 1225

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
              + K      + Q +                   +        Y F ++HAAAY +++ 
Sbjct: 1226 EKVRKGKGITDEYQAQLR----------AAKIPEWYIQSMLKIKYMFPRAHAAAYVLMAL 1275

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVE---------------------------------K 801
            + A+ K ++P  + A   ++  D  +                                  
Sbjct: 1276 RIAYFKVYFPTIYYATYFSVRADQFDIVAMSRGKNATKEALKRLRALGNDATVGDKNLLT 1335

Query: 802  IKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
            + +   +A +  I      +      ++ +  + +    +A+  +G   A+ I+ A  +K
Sbjct: 1336 VMEMANEALERGITFSMVDLYKSEASEWVIDGDTLIPPFSAVPSLGDNVAKQIIVARQEK 1395

Query: 861  PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            PF S ED   R    K+++ V++ L     LD  
Sbjct: 1396 PFLSKEDLKKR---GKVSQTVIDYLTKNSVLDGM 1426



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 29/81 (35%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L VH++ S ++       +     +  Q A+ + DT N+    E         ++ I 
Sbjct: 331 IELHVHTNMSTMDSVTDYGAVAKLAKSWGQTALGVVDTANVQGFPEAVAAGKKNDLKMIY 390

Query: 72  GCQLDIDMQDNLKMTNQGKTP 92
           G + ++         N    P
Sbjct: 391 GMEANLVEDGEPIAFNLADVP 411


>gi|221316507|ref|ZP_03598312.1| hypothetical protein BsubsN3_22609 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
          Length = 731

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 135/644 (20%), Positives = 249/644 (38%), Gaps = 50/644 (7%)

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            + + +    +    G+  +                  L      + +   S YF++  D
Sbjct: 5   SRYDIDRYYLHLIAEGMVAKKQDLNKENLSRINTELDELYHITENLGQ-PLSSYFVLSKD 63

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +         VG  RGS       Y L I  ++P++F+L   RFL+ +R  +PD D+D 
Sbjct: 64  VVDL-MWQVSLVGVSRGSACCFYLNYLLDIVQLNPIKFNLPHWRFLSKERPELPDIDLDS 122

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              +R E+I+  ++ YG E V  + TF +   ++ +    R L +       +  LIP  
Sbjct: 123 EGSKRHEIIQITKDHYGEENVLNMGTFTTEGTRSTVLTSCRGLGIDKDIAHNIANLIPTR 182

Query: 483 PAHPVS-LQAIADDSRF-----REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
                S  +    + +      +E        + L E    +EGL      HA+G++I  
Sbjct: 183 KGGIWSLHECFYGNPKEGTKPAKEFCREVDKYEGLKEAMLSIEGLISGRGQHASGVIIFP 242

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR---- 592
               +   M     S LP+TQF+ +     G +K D+L +  L  ++ +LD L +     
Sbjct: 243 DGYIKQNAM-MKTTSGLPITQFDAEDSIYMGGLKLDYLSINALDRIRTALDLLLEHGKIE 301

Query: 593 ---------GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDI 643
                           ++  +  + + LL     L  FQ E++  +QAL  + P   +++
Sbjct: 302 WQGSLRATYNKYFHPDVLEMESPKMFDLLFKGHVLNAFQFETAVGQQALTKINPRSFDEL 361

Query: 644 IALVSLYRPGP-IDNIVVYNNRKNGKEKIVS-----------IHPLIDPMLKETQGVIIY 691
            A  SL R     +  +    R     +                 +++  L +  G+   
Sbjct: 362 CAGNSLMRLSTDGEQPLDKYVRFKNNIQDWYEEMKTAGLNEEEIKILEEHLLDRYGICDT 421

Query: 692 QEQVM--QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
           QE +M   + + ++G+SL++A+  R+A+ K  ++ ++ Q+ +F  G  K G  K     +
Sbjct: 422 QEGLMLLAMDERIAGFSLTQANKFRKAVAKANQKLIEDQRIKFYEGGEKTGARKVFLDYV 481

Query: 750 FELLAK-FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM-------TLEMDNVEK 801
           +    K    Y F+  H A Y +I      +   Y   +   +          E +   K
Sbjct: 482 WNKELKPQFGYSFSLPHIAGYTMILMIEMNICHRYGAIYWKTACLSVNAGMIGETEKGTK 541

Query: 802 IKKFCQDARQFNIQIMPPSVNTPCVDFKV--GDNRIYYSLAAIKGVGTTTARHIMEASAD 859
                +        I+ P +N    +F     +N+I + L  I G+GT     I+E    
Sbjct: 542 YGAIAKAVGDMKGDILNPDINLSNKEFTPLEEENKILFGLKPIAGLGTDAIEKIIEHR-- 599

Query: 860 KPFDSLEDFCSR-VDSKKLNRRVLESLVFAGALDCFGYSRMQLL 902
            P+ S  DF  + VD   ++   + SL+ AG  D F  +R  L+
Sbjct: 600 -PYKSFGDFFKKIVDPGLISEAKVVSLIKAGCFDSFYPNRRLLM 642


>gi|329770058|ref|ZP_08261453.1| hypothetical protein HMPREF0433_01217 [Gemella sanguinis M325]
 gi|328837369|gb|EGF86999.1| hypothetical protein HMPREF0433_01217 [Gemella sanguinis M325]
          Length = 414

 Score =  191 bits (484), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 83/310 (26%), Positives = 156/310 (50%), Gaps = 16/310 (5%)

Query: 725  MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
            M+     FI  +   G  + +A ++F+L+  FA+YGFNKSHA  Y++++Y+ A++K +Y 
Sbjct: 1    MEYYGRIFIEKSVAAGYDRNVAKSLFDLIVTFANYGFNKSHAVVYSMLAYRLAYLKVYYT 60

Query: 785  VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKG 844
              F+ A +   + + +KI ++ Q+     I+++ P VN    DF V    I ++L AIK 
Sbjct: 61   KYFMTALLNNVISSEKKINEYKQELNNLGIKLIKPDVNVSLSDFSVYKQDIVFALTAIKN 120

Query: 845  VGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
            VG  ++  I++   +   +  ++DF  R++ KK++ +   SLV AGALD FGY+R  L++
Sbjct: 121  VGYRSSYEIVQDRLNFGKYLDIDDFLKRMN-KKVDYQAAASLVKAGALDTFGYNRATLMK 179

Query: 904  SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
             + +  +  +    N                   + +E+    + + R + E+ V G YF
Sbjct: 180  KVKDYYEDNRQYINNVRV-------ALSAETGLTLKVEEVEDYSITERIQMEKEVTGTYF 232

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
              HP+ V K    K      +     I  + +     V++K++ KT+ G  + ++T ++ 
Sbjct: 233  LKHPVQVEKE---KYSYLPLQYIGRDITDSYVE----VITKKEIKTKNGDYMAFLTVNDG 285

Query: 1024 AKEYEANFFP 1033
              +Y+   FP
Sbjct: 286  KNDYDITVFP 295


>gi|325913471|ref|ZP_08175837.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners UPII 60-B]
 gi|325477240|gb|EGC80386.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners UPII 60-B]
          Length = 1424

 Score =  191 bits (484), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 147/906 (16%), Positives = 288/906 (31%), Gaps = 198/906 (21%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + +L     G + + +LVS         +  R  LS L+ +  EGL+  +G   G +  
Sbjct: 599  HMTVLAINKVGLKNMYKLVSLASTK-YFYRLPRTPLSELKRLH-EGLLYGSGCLHGDVFI 656

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-----HRGYD---------RYRESQVVQL 203
            +          ++   +        ++ +Q      H   D         +   + + +L
Sbjct: 657  SMMQKGYDATREKARIYD-------FLEVQPPAAYQHLLDDKLIKDKKELQEIITNIYKL 709

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                 +P+VAT+++ ++ ++D     +L++         K+        Y          
Sbjct: 710  GKELGIPVVATSDAHYIDKKDAIYRKILLSAQ--KANRGKNYELPDLHFYTTQEMLDAFS 767

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            F D   A E  ++     +  ++   PI         ++  KE E    +KA        
Sbjct: 768  FLDPKIAEEIVIKNTNIIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHE------ 821

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                +      +  + RL++EL  I    ++  +LI    +  + K+   VG  RGS   
Sbjct: 822  ----LYGNPLPKIVKDRLEYELKSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGSVGS 876

Query: 384  SVTAYALTITDIDPLR-----------------------------------------FSL 402
            S+ A    IT+++PL                                            +
Sbjct: 877  SLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKKCPKCNADLAKDGQDI 936

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             F  FL      +PD D++F  D +     Y++  +G +   +  T G++  K A   V 
Sbjct: 937  PFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAGTIGTVADKIAYGYV- 995

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
                                       +   D++  +           L  +SQ   G+ 
Sbjct: 996  ---------------------------KHYEDENELKLRNAE------LDRLSQGASGVK 1022

Query: 523  RHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R    H AGIV    D  +    P+             T F+   I    ++KFD LG  
Sbjct: 1023 RTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHSIHD-NILKFDILGHD 1081

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQL 623
              T+++     + Q    VD   IP  D     L +                 TLG+ + 
Sbjct: 1082 DPTMIR-----MLQDLSGVDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTGTLGVPEF 1136

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +R  LE  +P    +++ +  L                N ++ I      +  ++ 
Sbjct: 1137 GTKFVRGMLEETKPTTFSELLQISGLSHG-------TDVWLGNAEDLINKGICKLKNVIG 1189

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
                ++           +        A     ++        +         +    I  
Sbjct: 1190 CRDNIMT--------DLIHWDVPPEVAFSTMESVRHGKGISDEN----MAILSKNKNIPD 1237

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                +  ++      Y F K+HA AY +++ + AW K +YPV +  + +++  D  + + 
Sbjct: 1238 WYIQSCLKI-----KYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYLSVRADLFDIVA 1292

Query: 804  K---------------------------------FCQDARQFNIQIMPPSVNTPCV-DFK 829
                                                 +  +  I I    +      +FK
Sbjct: 1293 MSHGKNTVKAAMKTIRDQGNNASTKDKTLLTVLEIANECLERGININMVDIEKSDALNFK 1352

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            +  ++ I      + G+G   A+ I+ A  ++PF S ED   R    K+++ ++E     
Sbjct: 1353 ILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLSIR---GKVSQTIMEYFENN 1409

Query: 889  GALDCF 894
            G LD  
Sbjct: 1410 GVLDGL 1415



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   S  + +       Q AIAITD  ++ +  E        G++ I 
Sbjct: 321 VELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAFPEAYVAGKKNGLKIIY 380

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 381 GYEANMINDQALLVLNPANMDYRGQEYVIF 410


>gi|160902203|ref|YP_001567784.1| DNA polymerase III, alpha subunit [Petrotoga mobilis SJ95]
 gi|160359847|gb|ABX31461.1| DNA polymerase III, alpha subunit [Petrotoga mobilis SJ95]
          Length = 802

 Score =  191 bits (484), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 188/781 (24%), Positives = 339/781 (43%), Gaps = 66/781 (8%)

Query: 197 ESQVVQLAYTHELPLVATNNSL---------FLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
              +  +A  +    +  +            +  +   +   +        ++   +  R
Sbjct: 20  LRDLFPIAKRYGYNCIVLSEPHPRSWVSFIVYAQKYRIKPIILYETANGKYLLQTNNDIR 79

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
               HY    + +     D+            +  F  +    I      +    I    
Sbjct: 80  SAIMHYNGLGNNLRLKKIDMDLPYVKYPTDFLKDIFKDEESLCIKDGLKYQNELSIFSNI 139

Query: 308 ENELRNKAVAGLEVRLAQ----GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
           E           E ++        I++     + ++RL +ELN+I ++K   Y L V   
Sbjct: 140 ETYYNIGNYRFDEYKVTDYNLTDTISQKDLTFEEKRRLSYELNIIKKLKVENYILTVKKI 199

Query: 364 IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFC 423
           +  AKKN I VGPGRGS  GS   Y L IT ++P+ + LLFERFLN  R  +PD D+D  
Sbjct: 200 VDTAKKNGISVGPGRGSAVGSFLVYKLGITKVNPIEYDLLFERFLNEYRHELPDIDLDID 259

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            ++R ++I+ +Q ++G  +++QI T+ +++ K+AL+     L                  
Sbjct: 260 AEKRVDLIKALQKEFGENKISQIRTYSTMKIKSALKKAEELLGYNLEAKINT-------- 311

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                   I       + +            +  LEG+    S HAAG++I    L    
Sbjct: 312 -------PIRSKENIDKFKSLSQKEKTFFYAAYYLEGIEVAESVHAAGLIISQNDLRTFS 364

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPF 603
           P+ +    ++P+ ++ M  ++  G+ KFD L L TLT L++       R           
Sbjct: 365 PLEK---KEVPIIEWEMSDLKYLGVEKFDILALDTLTFLKRLQIKEKYR---------EL 412

Query: 604 DDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNN 663
           +D +T+H L+   T GIFQL+S   ++  + ++P   E++I L+++ RPGP+++ ++   
Sbjct: 413 NDSKTFHYLSKGLTKGIFQLDSKLGQKLAQRIKPKNFEELILLLAINRPGPLESGMIDQY 472

Query: 664 RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKE 723
             +   +       +  +  ET+GV++YQEQ+M+IAQ+L  +S  E+D+LR+A+ KK K+
Sbjct: 473 VNDDSPEY------LKKIFSETKGVLVYQEQIMKIAQILGEFSPQESDLLRKAVSKKEKD 526

Query: 724 EMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHY 783
           ++   K +F++ A    I +  A  +F  +  FA Y FNKSHA AYA I+Y  +  K   
Sbjct: 527 KITTFKNKFVTNA-SKKIDEKEATLLFSQIENFAQYAFNKSHAVAYAHITYWLSEKKFKD 585

Query: 784 PVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
           P  F    + ++  +V+ I     +A    ++I  P +  P       +  +   L  IK
Sbjct: 586 PSNFFLEYVKIKGVDVDVI----NEASVLGVKIKLPDIRYPFGL--ASETELILPLYIIK 639

Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
           G+G      I E +      SLE+F + + +K +NR ++E ++ +GALD F  +R  LL 
Sbjct: 640 GIGRN-VSQIFEEAK---LLSLENFFNFIINKNINRNIVELIIKSGALDYFNNNRKNLL- 694

Query: 904 SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYF 963
                 +  +   +   +    +F   +   + K+              + E   +GF  
Sbjct: 695 --RETTQRVKGKVQQLEDIKSTLFGEREQKSTKKV------ETTLQDLAQYEIESIGFPL 746

Query: 964 S 964
           S
Sbjct: 747 S 747


>gi|307243534|ref|ZP_07525682.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Peptostreptococcus stomatis DSM 17678]
 gi|306493090|gb|EFM65095.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Peptostreptococcus stomatis DSM 17678]
          Length = 1202

 Score =  190 bits (483), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 152/953 (15%), Positives = 304/953 (31%), Gaps = 216/953 (22%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            L F       G++          + D   +  +            +     +G + L EL
Sbjct: 343  LRFIAMMKKDGVE---------KLSDINSVYGKIDHTKLRPSHATIYAQNYQGLRNLYEL 393

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-QVAEKRLLTF 174
            +S  +L +   +   +  S ++E   +GLI+ +  SSG +  A   N + +  +K L  +
Sbjct: 394  ISDSHL-NHFYRQPLMLKSLIKEK-RDGLIIGSACSSGELFNAIQRNKTGEEIDKILDFY 451

Query: 175  KKLFGDRLYVNLQRHR--------------GYDRYRESQVVQLAYTHELPLVATNNSLFL 220
                    ++ +                     +    ++V L       +VAT +   L
Sbjct: 452  D-------FIEIMPLDNLKYLVESGEIKTFEELKNINKKLVDLGNQSGKLVVATGDVHTL 504

Query: 221  SEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS-DLPEALENTVEIAR 279
                  AH+ L           K +  +   H+      +          A    VE + 
Sbjct: 505  D-----AHERLYRSVLKYSQIPKYKKNIESLHFRTTDEMLEEFAYLGPETAYRVVVENSN 559

Query: 280  RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
            + + + +   PI  +      D  +     ELR       E              +   +
Sbjct: 560  KIADMFESIKPIPDKTYPPIIDGSK----EELRRMCFDKAERIYGNPL------PEIVEK 609

Query: 340  RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
            RL+ ELN I    ++  ++I    +  +  +   VG  RGS   S+ A    IT+++PL 
Sbjct: 610  RLNRELNSIIGNGYAVMYIIANKLVAKSLSDGYLVG-SRGSVGSSLAATMSDITEVNPLP 668

Query: 400  FS-------------------------------------------LLFERFLNPDRMSMP 416
                                                         + FE FL  +    P
Sbjct: 669  AHYICPNEACKYSEFFGIGEYGSGIDLPDKKCPKCGSQLIKEGQDIPFEVFLGFEGDKEP 728

Query: 417  DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
            D D++F    +  + +Y +  +G     +  T G++Q K A   V               
Sbjct: 729  DIDLNFSGTYQPTIHKYTEELFGQGYTFRAGTIGTVQEKTAYGYV--------------- 773

Query: 477  KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VI 534
                                 F +    D +   +  +++    + R +  H  G+  + 
Sbjct: 774  -------------------RNFSKENHLDLTNAEMTWLTKGCTEVKRTSGQHPGGVMVIP 814

Query: 535  GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
             +  +    P+          +  T F+   I    ++K D LG    T+++     + +
Sbjct: 815  HNMNVHDFTPVQYPANDKSSGVITTHFDYHSI-SGRILKLDILGHDGPTIIR-----MLE 868

Query: 592  RGVKVDLSLIPFDDHETYHLLTTKG---------------TLGIFQLESSGMRQALEGMQ 636
                + ++ IP DD  T  L T+                 ++ I +  +   RQ L   +
Sbjct: 869  DMTGIKITDIPLDDPATMSLFTSTKALGIEPEDIDGTTVGSMAIPEFGTKFTRQMLVDTK 928

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
            P    +++ +  L                N ++ + +    +  ++     ++ Y     
Sbjct: 929  PTTFAELVRIAGLSHG-------TDVWLNNAQDLVRANVVGLKEVISTRDDIMNYL---- 977

Query: 697  QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKF 756
                +  G     A  +  ++ K          ++      +N +      +  ++    
Sbjct: 978  ----IFMGLKPKRAFTIMESVRKGK-----GLTKKDEEAMLENEVPDWYISSCKKI---- 1024

Query: 757  ADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE---------------- 800
              Y F K+HA AY + S++ A+ K +YP  F A   T ++D+ +                
Sbjct: 1025 -KYMFPKAHAVAYVMTSFRIAYCKVNYPEAFYATYFTTKVDDFDIELITSGIDKVKARLG 1083

Query: 801  -----------------KIKKFCQDARQFNIQIMPPSVNTPCV-DFKV-GDNRIYYSLAA 841
                              I +   +     I+ M   +      DFK+ G  +I   + +
Sbjct: 1084 QIKELGTKATTKENAQYTILEVVVEMYARGIEFMHIDLYESDARDFKIYGPKKILPPMIS 1143

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            ++G+G   A  ++EA  D  F S ED   R    KL++ V+E L   G+L+  
Sbjct: 1144 LQGMGENAALSVVEARKDGKFLSKEDLIKRT---KLSKTVVEKLSNHGSLEGM 1193



 Score = 84.5 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 33/86 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S ++  + +  ++++       AIAITD   + +  +    +    I+ I 
Sbjct: 102 VELHAHTKMSSMDSVVGVKKLINRALEWGHKAIAITDHGVVQAFPDAMNASNGKDIKVIY 161

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  I   D   + N     F    
Sbjct: 162 GVEAYIVDDDLDIVQNPNDKDFNQRF 187


>gi|55822053|ref|YP_140494.1| DNA polymerase III PolC [Streptococcus thermophilus CNRZ1066]
 gi|81559957|sp|Q5M1Y0|DPO3_STRT1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|55738038|gb|AAV61679.1| DNA polymerase III alpha subunit [Streptococcus thermophilus
            CNRZ1066]
          Length = 1464

 Score =  190 bits (483), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 131/955 (13%), Positives = 294/955 (30%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N ++ +        V    L V    G + + +LVS    +   +   RI    L E   
Sbjct: 602  NTELVSDDSYKKSRVKHATLYVQNQTGLKNIFKLVSLSN-VSYFEGVARIPRKVLDEY-R 659

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EG+I+ +  + G +      +    A +    +        ++ +               
Sbjct: 660  EGIIVGSACADGEVFDTLLSHGIDKAVEVAKYYD-------FIEVMPPAIYAPLIAKDLI 712

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRP 246
               G        ++++A   + P++AT N  +++ ED    ++++ A+    ++++    
Sbjct: 713  KDEGAIEQLIRDLIEVANRLDKPVLATGNVHYINPEDAIYREIIVRALGQGAMINRPIGK 772

Query: 247  RVTPDHYLKNRSEMVSIFSD--------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                       +   +               A E  V   +  +  ++    +       
Sbjct: 773  EENAQPAPLPEAHFRTTNEMLDEFAFLGKDLAYEIVVANTQAMANQIEEVEVVKKDLYTP 832

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  +++       KA            +           R++ EL+ I    F+  +L
Sbjct: 833  YIDRAEEQVAEMTYAKAFE----------LYGNPLPDIIDLRIEKELSSILGNGFAVIYL 882

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +  + +    VG  RGS   S  A  + IT+++P+                    
Sbjct: 883  ASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYLCPKCQHSEFITDGSY 941

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  D +      V++ 
Sbjct: 942  GSGFDLPDKECSECGTEYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDI 1001

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G +   +  T G++  + A   V +  +  Y++  R  +                    
Sbjct: 1002 FGEQYAFRAGTVGTVADRTAYGFV-KGYERDYNKFYRDAE-------------------- 1040

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++  + G+ R+   H  GIV       +    P+          
Sbjct: 1041 -------------VDRLAMGVAGVKRNTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAA 1087

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D   I  DD +   L 
Sbjct: 1088 WQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQDLSGIDPKDIRADDPDVMKLF 1141

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +S     +     + +  ++       P     ++  +   +G + 
Sbjct: 1142 SGTEVLGVTPEQIGTSTGVLGIPEFGTNFVRGMVEET---HPTTFAELLQLSGLSHGTDV 1198

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +      T   +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1199 WLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLDPKMAFTIMERVRKGMWLKISEEER 1258

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A +        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1259 NGYIQAMRENNVPDWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1314

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     E                                          +  +    
Sbjct: 1315 YFSIRAKAFELKTMSAGLDAVKARMEDIKEKRQRNEATNLENDLFTTLEIVNEMLERGFT 1374

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A++G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1375 FGQLDLYKSQATEFLIEGDTLIPPFIALEGLGENVAKQLVAAREEGEFLSKTELRKR--- 1431

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E L      D  G      L ++               +   ++F  
Sbjct: 1432 GGLSSTLVERL------DEMGI-----LGNMPE-------------DNQLSLFDD 1462



 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 38/90 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++  ++D  A    PA+AITD  N+ S      KA  AGI+ I 
Sbjct: 340 VEFHAHTNMSTMDAIPTVEELIDTAAFWGHPAVAITDHANVQSFPHGYHKAKKAGIKAIF 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       + N           +V 
Sbjct: 400 GLEANLVEDKVPIVYNSENLELKEATYVVF 429


>gi|241888547|ref|ZP_04775855.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella
            haemolysans ATCC 10379]
 gi|241864814|gb|EER69188.1| DNA polymerase III, alpha subunit, Gram-positive type [Gemella
            haemolysans ATCC 10379]
          Length = 1449

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 143/908 (15%), Positives = 286/908 (31%), Gaps = 195/908 (21%)

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            +LV  A+G + L  LVS             I  S L +   E L++ +G     +     
Sbjct: 624  ILVKNAKGLKDLFRLVSYSCTKYLNSAKPTIPRSLLAQY-REDLLIGSGNGDNEVFEELL 682

Query: 161  FNSSQVAEKRLLTFKKLFGDRLYVNLQ--RH------------RGYDRYRESQVVQLAYT 206
             +     E  +  +        Y+ +Q   H                     +++QLA  
Sbjct: 683  NSKEAKVEDIIDFYD-------YIEIQPKHHYANFIRNERIADNAELEEILKKLIQLAKK 735

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS- 265
             E  +VAT +  +L E     H     +  +   +   R        L     +      
Sbjct: 736  KEKIVVATGDCYYLDEYQ---HVYRQILRLTVKSNPGARDLKPMATLLTTEEMLKEFSYL 792

Query: 266  DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
            D     E  ++   + + ++++  P+  +      +       +E+RN +         +
Sbjct: 793  DEQLREELVIDNTHKINDMIELVVPLKDKLYTPNIEG----AADEVRNLSYDMAHRIYGE 848

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                     +   +RL+ EL  I    FS  +LI    ++ +  +   VG  RGS   S+
Sbjct: 849  ------ELPEIVEKRLEKELASIIGNGFSVVYLISHKLVKKSLDDGYLVG-SRGSVGSSL 901

Query: 386  TAYALTITDIDPLR-----------------------------------------FSLLF 404
             A  + IT+++PL                                            + F
Sbjct: 902  VATMMEITEVNPLAPHYVCPECKHSEFFLNAEYASGFDLPNKNCPHCDVKMTKDGQDIPF 961

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  +   +PD D++F  + +     + +  +G + V +  T  ++  K A       
Sbjct: 962  ETFLGFNGDKVPDIDLNFSGEYQATAHNFTKEIFGEDYVYRAGTISTVAEKTAYS----- 1016

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
                Y + + + K   +                             +  I+   EG  R 
Sbjct: 1017 FTRDYYEKNEIEKRSID-----------------------------IERIAAGCEGSKRT 1047

Query: 525  ASTHAAGI--VIGDRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  GI  V  D  +    P       +      T F+   I    ++KFD LG    
Sbjct: 1048 TGQHPGGILVVPNDMDIFDFTPYQFPADDETSPWRTTHFDFHSIHD-NILKFDILGHDDP 1106

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETY-----------HLLTTKGTLGIFQLESSGM 628
            T+++K  D          + +   +    +            + +  GT GI +  ++ +
Sbjct: 1107 TMIRKLQDLSG--IDPKTIDVSDPEVMGIFSTVEALGVTRDQVDSASGTFGIPEFGTNFV 1164

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
             Q L+  +P    +++ +  L                N +E I +    +  ++     +
Sbjct: 1165 IQMLDDTKPTTYSELVQISGLSHG-------TDVWLGNAQELIKNGTCELKDVIGCRDDI 1217

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++Y         + +G     +  +  ++ K      D     F        + +    +
Sbjct: 1218 MVYL--------IHAGLEEGLSFKIMESVRKGKGLTED-----FEKEMIDKDVPEWYIDS 1264

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI------ 802
              ++      Y F K+HA AY +++ + AW K H P+ +  A  ++   + + I      
Sbjct: 1265 CKKI-----KYMFPKAHACAYVLMALRIAWFKVHQPLTYYCAYYSVRASDFDIITVVKGT 1319

Query: 803  ----------------------------KKFCQDARQFNIQIMPPSVNTPC-VDFKVGDN 833
                                         +   +  +         +      D+ +  N
Sbjct: 1320 ETLKAKIKEIKTTDKNELSNKDKDALVSYEIANEMMERGFTFSKVDLEKSASHDYIIEGN 1379

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +    + + G+G   A  I++A  +K F S+EDF  R     ++  V+E L   G L  
Sbjct: 1380 TLIPPFSIVPGLGDNVANKIVQAREEKAFLSIEDFSKR---GSVSSTVVEYLREMGTLKG 1436

Query: 894  FGYSRMQL 901
                + QL
Sbjct: 1437 L-PEKAQL 1443



 Score = 64.4 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 8/94 (8%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS-QKA---CAAGI 67
           + L  H+  S LEG  S    L +       AIA TDT   +  ++   +         I
Sbjct: 343 IELNTHTKMSQLEGISSAKEYLSRAIDWGHEAIAFTDT---YG-VQAYPEICLSSKGKDI 398

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           +PI G    I        TN  +        +V 
Sbjct: 399 KPIYGLNAFIMDDSITATTNPKELKLKDATYVVF 432


>gi|313888341|ref|ZP_07822012.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus
            harei ACS-146-V-Sch2b]
 gi|312845744|gb|EFR33134.1| DNA polymerase III, alpha subunit, Gram-positive type [Peptoniphilus
            harei ACS-146-V-Sch2b]
          Length = 1012

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 144/925 (15%), Positives = 297/925 (32%), Gaps = 188/925 (20%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            + + +  +   +    K  F +  S++LLV    G + L  L+S  ++        ++  
Sbjct: 167  EFNFENLNKEIVNIDSKRLFES--SLLLLVQNEIGLKNLYMLISDSHMK-YFNFVAKVPR 223

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR----- 188
            S L +   EG+++ +G S+  +  A +    Q     +  +        ++ +Q      
Sbjct: 224  SLLDKY-REGILVGSGNSNSELFDAIYRMCPQEELLEIAKYYD------FLEIQPASDNI 276

Query: 189  -------HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                   +   D R    +++ +     +P+VA +++ +L E +     +++   +    
Sbjct: 277  LAIEDGKYTIEDIREINKKIISIGEELNIPVVADSDTYYLEESEDVLRRIVL---NGKPG 333

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                R       Y K   EM+  FS L +  +   E+    +  L+     +    +   
Sbjct: 334  RPDPRASRNQKFYFKTTEEMLDEFSYLGQ--DKAYEVVVTNTNKLKNSIKDIKPIPDGTY 391

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              + +  ++ LR                      +    RL+ EL  I    +S  ++I 
Sbjct: 392  PPVIEGSDDSLREMTYKKAHDIYGD------ELPKIVEDRLEKELKSIISNGYSVLYIIA 445

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S  A    IT+++PL                      
Sbjct: 446  QKLVKKSNDDGFLVG-SRGSVGSSFVATMADITEVNPLPPHYICPNCKYSEFTEDLTYGS 504

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                 ++ FE FL       PD D++F  + +    +Y +  +G
Sbjct: 505  GVDMPDKVCPKCGSPLKKDGHNIPFEVFLGFYGDKEPDIDLNFAGEYQPRAHKYTEELFG 564

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
               V +  T G +  K A   V +  +                                 
Sbjct: 565  EGYVFRAGTIGKIADKTAYGYVKKYFE--------------------------------- 591

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYR---DVRSDLP 554
                   S   +  +S+ +    R +  H  G++I      +    P+     D  S + 
Sbjct: 592  ---NKHISPIEIDRLSRAITDGKRTSGQHPGGVMIVPKTNSIFDFTPIQYPADDPSSGVI 648

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP----FDDHETYH 610
             T F+  +I    ++K D LG    T+++   DF       + L        F+  E ++
Sbjct: 649  TTHFDYNFI-HGKILKLDILGHDGPTIIKMLEDFTGIDSNTIRLDDKKTLSIFNSAEAFN 707

Query: 611  LLTTKGTLG-----IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
            +     +       I +  +S +   L    P    D++ +  L                
Sbjct: 708  MDEEVFSCKTGTLGIPEFGTSFVISMLLETNPKNFADLVRISGLSHG-------TDVWIS 760

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
            N +E + S    +  ++   + +++Y                +E  +    M K  K + 
Sbjct: 761  NAQELVDSGRAELKDVIATREDIMVYLINAG-----------AENKMAFDTMEKVRKGK- 808

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
                E   S      + +    +  ++      Y F K+HA AY ++S++ A+ K +YP+
Sbjct: 809  -GLTEEQESIMKNLDLPEWYIDSCKKI-----KYMFPKAHAVAYVMLSFRIAYYKLNYPL 862

Query: 786  EFLAASMTLEMDNVEKIKKFCQ--------------------------------DARQFN 813
             F A   T+++ +                                         +     
Sbjct: 863  AFYATFFTIKLTDFNGENIIEGPNFLKNRIKMLREIEKPTAKDKGEIRVSEVALEMYARG 922

Query: 814  IQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
             Q +   +       F + D +I   + A+ G+G   A  I + S    + S+EDF  R 
Sbjct: 923  FQFLKADIYKSKASKFTIEDGKIRMPIRAVPGIGENCANKIEQESQKSKYLSIEDFSKRT 982

Query: 873  DSKKLNRRVLESLVFAGALDCFGYS 897
             +      V+  L   G L+    +
Sbjct: 983  GAGN---SVITILQKNGMLEDLDET 1004


>gi|309776025|ref|ZP_07671017.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916307|gb|EFP62055.1| DNA polymerase III, alpha subunit, Gram-positive type
            [Erysipelotrichaceae bacterium 3_1_53]
          Length = 1271

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 133/911 (14%), Positives = 268/911 (29%), Gaps = 190/911 (20%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGK---------QSVRICLSWLQEIG-TEGLIML 147
             + +L     G + L ELV+  +                  RI  S +++      L++ 
Sbjct: 411  HVTVLAKNMAGLKELFELVTLSHTKYLAYSSKSTNNIVAEPRILRSEIEKRRINGNLLIG 470

Query: 148  TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RHRGYDR-------- 194
            +   +G +       + Q  E+ +  +        Y+ +Q     RH             
Sbjct: 471  SSCLNGEVFDMAQTRNEQTLEEVMQFYD-------YIEIQPLENYRHLVERDSISSMDRL 523

Query: 195  -YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPRVTPDH 252
                  +V  A   +  LVAT +  ++   +    D+ ++      V             
Sbjct: 524  KEILKSIVSAADKLDKLLVATGDCHYVQPGEKMIRDIYISSQAIGGVRHPLYIYNQEKRR 583

Query: 253  YLKNRSEMVSIFSDL---------PEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              K   +      ++           A +  ++  +  + ++Q   P+  R    + +  
Sbjct: 584  KFKAPDQHFRTTKEMLKEFAWLGEQRAYDMVIKNTKLIADMIQEVKPVKDRLYPPDIEG- 642

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                + +L +        +            +   +RL+ EL  I    F   + I    
Sbjct: 643  ---SDQKLTDICYENAHKKYGP------VLPEIVEKRLEKELASIIGHGFYVVYYISHLL 693

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------ 399
            ++ +  +   VG  RGS   S  A    IT+++PL                         
Sbjct: 694  VKKSLNDGYLVG-SRGSVGSSFVATMSEITEVNPLAPHYVCPKCHYVKFYTDGSVADGFD 752

Query: 400  -----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
                               + FE FL  +   +PD D++F  D +     Y +  +G + 
Sbjct: 753  LPDIICPNCGETIRGDGHDIPFETFLGFEGDKVPDIDLNFSGDYQPNAHAYTKEVFGDDH 812

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            V +  T G++  + A   V               K    +     S++            
Sbjct: 813  VYRAGTIGTVATQTAFGYV---------------KGYEEEMGIEGSMRN----------- 846

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMY---RDVRSDLPVTQ 557
                   ++L +++  EG+ R    H  GI++    L      P+     +  ++   T 
Sbjct: 847  ------AQVLHLAKGCEGVKRTTGQHPGGIIVIPLDLDVHDFTPVQYPANNPYAEWKTTH 900

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGT 617
            F    I    ++KFD LG    T ++              + +   +    +  +     
Sbjct: 901  FEFHDIHD-NVLKFDILGHVDPTAMKMLERMSG--IDPTTIPMNDPETMSVFSKVDALKI 957

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
                  E +G     E   P     +     L RP   D ++  +   +G +  +     
Sbjct: 958  DTSKSTEETGAAGLPEFGTPFVRGIL----ELTRPTTFDELLKISGLSHGTDVWLGNAKD 1013

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            +      T   +I     + +  L  G     A  +  ++ K    + +     +I    
Sbjct: 1014 LIDNGTCTLKSVIGCRDDIMVYLLHKGLRPKLAFTIMESVRKGKGLKDE-----WIPEMK 1068

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
             NG+      +  ++      Y F K+HA AY +++ + AW K H P  +     ++  D
Sbjct: 1069 ANGVEDWYIDSCLKI-----KYMFPKAHATAYVMMAIRIAWFKVHRPQVYYCMFFSIRCD 1123

Query: 798  NVEKIKKFCQDARQFNIQI---------------------------MPPSVNTPCVDFK- 829
              +       +                                   +   +N     F  
Sbjct: 1124 AYDIETMIKGEQAIRRRMQEISDMLKNNETKKDVSKKDKDTFNTLELALEMNLRGYYFTN 1183

Query: 830  -----------VGDNR----IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                       + D      I     +I G+G   A  ++EA     F S ED   R   
Sbjct: 1184 IDIMRSASREFIVDPENASYIIPPFTSIDGLGENVADTVVEARKQGAFLSKEDLQRRTAL 1243

Query: 875  KKLNRRVLESL 885
                 + +ES+
Sbjct: 1244 SGTLVKKMESM 1254



 Score = 68.7 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA------LEFSQKACAA 65
           V L VH+  S ++G  ++   +D+  A    AIAITD   + +       ++   K+   
Sbjct: 129 VELHVHTKLSEMDGVCNIEEYIDQANAWGMDAIAITDHLVVQAFPKAQHKVDAINKSRET 188

Query: 66  GIQPIIGCQLD-IDMQDNLKMTNQGKTPFPTVPSI 99
             + I G +++ +D    +    Q          +
Sbjct: 189 PFKMIYGLEMNMVDPALQIVRNIQDIELEKGTYCV 223


>gi|329919876|ref|ZP_08276814.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners SPIN 1401G]
 gi|328936966|gb|EGG33396.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners SPIN 1401G]
          Length = 1424

 Score =  190 bits (481), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 146/906 (16%), Positives = 289/906 (31%), Gaps = 198/906 (21%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + +L     G + + +LVS         +  R  LS L+ +  EGL+  +G   G +  
Sbjct: 599  HMTVLAINKVGLKNMYKLVSLASTK-YFYRLPRTPLSELKRLH-EGLLYGSGCLQGDVFI 656

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQ--------------L 203
            +          ++   +        ++ +Q    Y +  + ++++              L
Sbjct: 657  SMMQKGYDATREKARIYD-------FLEVQPPAAYQQLLDDKLIKDKKELQEIITNIYKL 709

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                 +P+VAT+++ ++ ++D     +L++         K+        Y          
Sbjct: 710  GKELGIPVVATSDAHYIDKKDAIYRKILLSAQ--KANRGKNYELPDLHFYTTQEMLDAFS 767

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            F D   A E  ++     +  ++   PI         ++  KE E    +KA        
Sbjct: 768  FLDPKIAEEIVIKNTNIIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHE------ 821

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                +      +  + RL++EL  I    ++  +LI    +  + K+   VG  RGS   
Sbjct: 822  ----LYGNPLPKIVKDRLEYELKSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGSVGS 876

Query: 384  SVTAYALTITDIDPLR-----------------------------------------FSL 402
            S+ A    IT+++PL                                            +
Sbjct: 877  SLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKKCPKCSADLAKDGQDI 936

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             F  FL      +PD D++F  D +     Y++  +G +   +  T G++  K A   V 
Sbjct: 937  PFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAGTIGTVADKIAYGYV- 995

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
                                       +   D++  +           L  +SQ   G+ 
Sbjct: 996  ---------------------------KHYEDENELKLRNAE------LDRLSQGASGVK 1022

Query: 523  RHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R    H AGIV    D  +    P+             T F+   I    ++KFD LG  
Sbjct: 1023 RTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHSIHD-NILKFDILGHD 1081

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQL 623
              T+++     + Q    VD   IP  D     L +                 TLG+ + 
Sbjct: 1082 DPTMIR-----MLQDLSGVDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTGTLGVPEF 1136

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +R  LE  +P    +++ +  L                N ++ I      +  ++ 
Sbjct: 1137 GTKFVRGMLEETKPTTFSELLQISGLSHG-------TDVWLGNAEDLINKGICKLKNVIG 1189

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
                ++           +        A     ++        +         +    I  
Sbjct: 1190 CRDNIMT--------DLIHWDVPPEVAFSTMESVRHGKGISDEN----MAILSKNKNIPD 1237

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                +  ++      Y F K+HA AY +++ + AW K +YPV +  + +++  D  + + 
Sbjct: 1238 WYIQSCLKI-----KYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYLSVRADLFDIVA 1292

Query: 804  K---------------------------------FCQDARQFNIQIMPPSVNTPCV-DFK 829
                                                 +  +  I I    +      +FK
Sbjct: 1293 MSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLERGININMVDIEKSDALNFK 1352

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            +  ++ I      + G+G   A+ I+ A  ++PF S ED   R    K+++ ++E     
Sbjct: 1353 ILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLSIR---GKVSQTIMEYFENN 1409

Query: 889  GALDCF 894
            G LD  
Sbjct: 1410 GVLDGL 1415



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   S  + +       Q AIAITD  ++ +  E        G++ I 
Sbjct: 321 VELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAFPEAYVAGKKNGLKIIY 380

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 381 GYEANMINDQALLVLNPANMDYRGQEYVIF 410


>gi|322374172|ref|ZP_08048705.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            sp. C150]
 gi|321276877|gb|EFX53949.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            sp. C150]
          Length = 1464

 Score =  190 bits (481), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 130/947 (13%), Positives = 294/947 (31%), Gaps = 185/947 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N ++ ++       V    L V    G + + +LVS    +   +   RI  + L E   
Sbjct: 602  NTELVSEDSYKKSRVKHATLYVQNQTGLKNIFKLVSLSN-VSYFEGVARIPRTVLDEY-R 659

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR----------HRG 191
            EG+I+ +  + G +      +  + A +    +        ++ +               
Sbjct: 660  EGIIVGSACADGEVFDTLLSHGIEKAVEVAKYYD-------FIEVMPPAIYAPLIAKDLI 712

Query: 192  YDRYRESQVV----QLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRP 246
             D     Q++    ++A   + P++AT N  +++ ED    ++++ A+    ++++    
Sbjct: 713  KDEATVEQLIRDLIEVANRLDKPVLATGNVHYINPEDAIYREIIVRALGQGAMINRPIGK 772

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                       +   +    L +      E+A                 +E    D+   
Sbjct: 773  GENAKPAPLPEAHFRTTNEMLDDFAFLGKELAYEVVVTNTQAMADQIEEVEVVKKDLYTP 832

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              +    +       +  +  +           R++ EL+ I    F+  +L     +  
Sbjct: 833  FIDRAEEQVAEMTYAKAFE--LYGNPLPDIIDLRIEKELSSILGNGFAVIYLASQMLVNR 890

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            + +    VG  RGS   S  A  + IT+++P+                            
Sbjct: 891  SNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYLCPKCQHSEFITDGSYGSGFDLPD 949

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL  D   +PD D++F  D +      V++ +G +   +
Sbjct: 950  KKCSECGSEYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEQYAFR 1009

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  + A   V +  +  Y++  R  +                            
Sbjct: 1010 AGTVGTVADRTAYGFV-KGYERDYNKFYRDAE---------------------------- 1040

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNM 560
                 +  ++    G+ R    H  GIV       +    P+             T FN 
Sbjct: 1041 -----VDRLAMGAAGVKRSTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAAWQTTHFNF 1095

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
              I++  ++K D LG    T+++K      Q    +D   I  DD +   L +    LG+
Sbjct: 1096 HDIDE-NVLKLDILGHDDPTMIRK-----LQDLSGIDPKDIRADDPDVMKLFSGTDILGV 1149

Query: 621  F--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
               Q+ +      +     + +  ++       P     ++  +   +G +  +     +
Sbjct: 1150 TPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDVWLGNAQDL 1206

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
                  T   +I     + +  + +G     A  +   + K +  ++ +++      A +
Sbjct: 1207 IKEGIATLKTVIGCRDDIMVYLMHAGLDPKMAFTIMERVRKGMWLKISEEERNGYIQAMR 1266

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
                    +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A  ++    
Sbjct: 1267 ENNVPDWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIRAKA 1322

Query: 799  VEKIKK-----------------------------------FCQDARQFNIQIMPPSVNT 823
             E                                          +  +         +  
Sbjct: 1323 FELKTMSAGLDAVKARMEDIKEKRQRNEATNVEIDLFTTLEIVNEMLERGFTFGQLDLYK 1382

Query: 824  PCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                +F +  + +     A++G+G   A+ ++ A  +  F S  +   R     L+  ++
Sbjct: 1383 SQATEFLIEGDTLIPPFIALEGLGENVAKQVVAAREEGEFLSKTELRKR---GGLSSTLV 1439

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            E L      D  G      L ++               +   ++F  
Sbjct: 1440 EKL------DEMGI-----LGNMPE-------------DNQLSLFDD 1462



 Score = 88.7 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 40/90 (44%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++  ++D  A+   PA+AITD  N+ S      +A  AGI+ I 
Sbjct: 340 VEFHAHTNMSTMDAMPTVEELIDTAASWGHPAVAITDHANVQSFPHGYHRAKKAGIKAIF 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       + N  +        +V 
Sbjct: 400 GLEANLVEDKVPIVYNSEELELKEATYVVF 429


>gi|217077906|ref|YP_002335624.1| DNA polymerase III subunit alpha [Thermosipho africanus TCF52B]
 gi|217037761|gb|ACJ76283.1| DNA polymerase III subunit alpha [Thermosipho africanus TCF52B]
          Length = 827

 Score =  190 bits (481), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 192/806 (23%), Positives = 345/806 (42%), Gaps = 116/806 (14%)

Query: 199 QVVQLAYTHELPLVAT---NNSLFLSEEDYEAHDVLMAVAHS--TVVSQKDRPRVTPDHY 253
           + + +  ++ +  + +   NN +F ++  YE +++  A   +  + +S    P       
Sbjct: 45  KFIDICKSYGIKPIISFKHNNKVFYAKNTYELYELFEAYNKNDFSKISLNYIPLDEIYFA 104

Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
                +             N VE          +         ++      K        
Sbjct: 105 YYLPGQRYLYEIFSKFLGCNPVEKGVLKKIYCDLQVSDYNIKSDQVLPKANKNFLEF--- 161

Query: 314 KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
                           K      Y++R++ E+++I    F  YF  V   ++ AKKNNI 
Sbjct: 162 ----------------KNVKNPIYKKRIEKEVSIIKEKNFVDYFFTVYKIVKIAKKNNIK 205

Query: 374 VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
           +GPGRGS  GS+ +Y L IT +DP+++ LLFERFLN  R   PD D+D    +R  +I  
Sbjct: 206 IGPGRGSAVGSLVSYFLGITSVDPIKYDLLFERFLNKGRNEPPDIDLDVEDTKRKLLIEK 265

Query: 434 VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
           ++ ++    V  I TF S+  K   +                                  
Sbjct: 266 IREEFK--YVYYITTFSSIGEKTLKKIAYENKISS------------------------- 298

Query: 494 DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                              +  + L  L  H S HAAGI+I    +        +V    
Sbjct: 299 -------------------DKIKYLLNLPIHKSVHAAGIIISKEKI--------NVPIKD 331

Query: 554 PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT 613
              +++M+ + K G IKFD LGLKTLT+L +          +    +   +D +T+HL++
Sbjct: 332 QTIEWDMESLHKIGYIKFDLLGLKTLTILSEL---------EKKFGVPRLNDQKTFHLIS 382

Query: 614 TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              T GIFQL+S+  ++ +  ++P  I+++   +SL RPGP+   +          KI +
Sbjct: 383 KGFTNGIFQLDSNLGKKVIRTIKPRNIKELSIALSLNRPGPLKAGIDKK---YANSKIEN 439

Query: 674 IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
               +  +LK+T GV+I+QEQ+M+IA   + ++  EADV R+A+ KK K+ M    ++  
Sbjct: 440 SSQKL-DVLKDTNGVLIFQEQIMKIATEYANFTEEEADVFRKAVSKKDKQIMKPLLKKLK 498

Query: 734 SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
            G     ++  I   + E + +F++Y FNKSHA AYA I+Y  ++ KTH+P +F    + 
Sbjct: 499 DG-LLKKLNPNIVNELIETIIEFSEYAFNKSHAIAYAHITYYLSYFKTHFPKQFYKTILK 557

Query: 794 LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHI 853
            +    EKI     +      +++PP++    ++  + +N     +  I G+     + I
Sbjct: 558 YDSSKSEKIIL---ELHARGFKVIPPNLTQNELE-NLENNIFEIPITLISGINEKIGKQI 613

Query: 854 MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
           +    +KP+DSL++F  +  +  +N  ++ESL+  G+ D    SR  LL  L  ++    
Sbjct: 614 I---KNKPYDSLQNFLHK--NPNINYSIIESLIKIGSFDYLSDSRRALLVKLKELRTGIN 668

Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKP 973
                 ++   ++F      FS +  +EK     S  R + E   +GF  S  P++ ++ 
Sbjct: 669 TKMLEISS---SLFG---KKFSKEYKIEK-----SWERCDMEYTTVGFCISK-PVEKFEN 716

Query: 974 ILRKMGIKGYEESVATIRGNNIRLAA 999
            L  +       S +    +++ +  
Sbjct: 717 KLAPL---SLALSRSQKIASHVSVIG 739



 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 18 SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          S YS     L + + +   + +    + + DT N  + ++F     + GI+PII
Sbjct: 7  SPYSFSGSILKIEDAVKYASINGARCLILCDT-NFHATVKFIDICKSYGIKPII 59


>gi|309809542|ref|ZP_07703400.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners SPIN 2503V10-D]
 gi|308170214|gb|EFO72249.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            iners SPIN 2503V10-D]
          Length = 1424

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 146/906 (16%), Positives = 288/906 (31%), Gaps = 198/906 (21%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
             + +L     G + + +LVS         +  R  LS L+ +  EGL+  +G   G +  
Sbjct: 599  HMTVLAINKVGLKNMYKLVSLASTK-YFYRLPRTPLSELKRLH-EGLLYGSGCLQGDVFI 656

Query: 158  AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-----HRGYD---------RYRESQVVQL 203
            +          ++   +        ++ +Q      H   D         +   + + +L
Sbjct: 657  SMMQKGYDATREKARIYD-------FLEVQPPAAYQHLLDDKLIKDKKELQEIITNIYKL 709

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                 +P+VAT+++ ++ ++D     +L++         K+        Y          
Sbjct: 710  GKELGIPVVATSDAHYIDKKDAIYRKILLSAQ--KANRGKNYELPDLHFYTTQEMLDAFS 767

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            F +   A E  ++     +  ++   PI         ++  KE E    +KA        
Sbjct: 768  FLNPKIAEEIVIKNTNIIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHE------ 821

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                +      +  + RL++EL  I    ++  +LI    +  + K+   VG  RGS   
Sbjct: 822  ----LYGNPLPKIVKDRLEYELKSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGSVGS 876

Query: 384  SVTAYALTITDIDPLR-----------------------------------------FSL 402
            S+ A    IT+++PL                                            +
Sbjct: 877  SLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPDKKCPKCNADLAKDGQDI 936

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             F  FL      +PD D++F  D +     Y++  +G +   +  T G++  K A   V 
Sbjct: 937  PFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAGTIGTVADKIAYGYV- 995

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
                                       +   D++  +           L  +SQ   G+ 
Sbjct: 996  ---------------------------KHYEDENELKLRNAE------LDRLSQGASGVK 1022

Query: 523  RHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLK 577
            R    H AGIV    D  +    P+             T F+   I    ++KFD LG  
Sbjct: 1023 RTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHSIHD-NILKFDILGHD 1081

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQL 623
              T+++     + Q    VD   IP  D     L +                 TLG+ + 
Sbjct: 1082 DPTMIR-----MLQDLSGVDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTGTLGVPEF 1136

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
             +  +R  LE  +P    +++ +  L                N ++ I      +  ++ 
Sbjct: 1137 GTKFVRGMLEETKPTTFSELLQISGLSHG-------TDVWLGNAEDLINKGICKLKNVIG 1189

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
                ++           +        A     ++        +         +    I  
Sbjct: 1190 CRDNIMT--------DLIHWDVPPEVAFSTMESVRHGKGISDEN----MAILSKNKNIPD 1237

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                +  ++      Y F K+HA AY +++ + AW K +YPV +  + +++  D  + + 
Sbjct: 1238 WYIQSCLKI-----KYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYLSVRADLFDIVA 1292

Query: 804  K---------------------------------FCQDARQFNIQIMPPSVNTPCV-DFK 829
                                                 +  +  I I    +      +FK
Sbjct: 1293 MSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLERGININMVDIEKSDALNFK 1352

Query: 830  V-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
            +  ++ I      + G+G   A+ I+ A  ++PF S ED   R    K+++ ++E     
Sbjct: 1353 ILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLSIR---GKVSQTIMEYFENN 1409

Query: 889  GALDCF 894
            G LD  
Sbjct: 1410 GVLDGL 1415



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   S  + +       Q AIAITD  ++ +  E        G++ I 
Sbjct: 321 VELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAFPEAYVAGKKNGLKIIY 380

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 381 GYEANMINDQALLVLNPANMDYRGQEYVIF 410


>gi|322517665|ref|ZP_08070529.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124]
 gi|322123697|gb|EFX95287.1| DNA polymerase III PolC [Streptococcus vestibularis ATCC 49124]
          Length = 1424

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 130/940 (13%), Positives = 297/940 (31%), Gaps = 171/940 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N ++ ++       V    L V    G + + +LVS    +   +   RI  + L E   
Sbjct: 562  NTELVSEDSYKKSRVKHATLYVQNQTGLKNIFKLVSLSN-VSYFEGVARIPRTVLDEY-R 619

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NLQRHRGYDR 194
            EG+I+ +  + G +      +    A +    +   ++    +Y       L +      
Sbjct: 620  EGIIVGSACADGEVFDTLLSHGIDKAVEVAKYYDFIEVMPPAIYAPLIAKGLIKDEAAIE 679

Query: 195  YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHY 253
                 ++++A   + P++AT N  +++ ED    ++++ A+    ++++           
Sbjct: 680  QLIRDLIEVANRLDKPVLATGNVHYINPEDAIYREIIVRALGQGAMINRPIGKGENAKPA 739

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
                +   +    L +      ++A +               +E    D+     +    
Sbjct: 740  PLPEAHFRTTNEMLDDFAFLGKDLAYKIVVTNTQAMADQIEEVEVVKKDLYTPFIDRAEE 799

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            +       +  +  +           R++ EL+ I    F+  +L     +  + +    
Sbjct: 800  QVAEMTYAKAFE--LYGNPLPDIIDLRIEKELSSILGNGFAVIYLASQMLVNRSNERGYL 857

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLR---------------------------------- 399
            VG  RGS   S  A  + IT+++P+                                   
Sbjct: 858  VG-SRGSVGSSFVATMIGITEVNPMPPHYLCPKCQHSEFITDGSYGSGFDLPDKECSECG 916

Query: 400  -------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
                     + FE FL  D   +PD D++F  D +      V++ +G +   +  T G++
Sbjct: 917  TEYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEQYAFRAGTVGTV 976

Query: 453  QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512
              + A   V +  +  Y++  R  +                                 + 
Sbjct: 977  ADRTAYGFV-KGYERDYNKFYRDAE---------------------------------VD 1002

Query: 513  EISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAG 567
             ++    G+ R+   H  GIV       +    P+             T FN   I++  
Sbjct: 1003 RLAMGAAGVKRNTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAAWQTTHFNFHDIDE-N 1061

Query: 568  LIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLES 625
            ++K D LG    T+++K      Q    +D   I  DD +   L +    LG+   Q+ +
Sbjct: 1062 VLKLDILGHDDPTMIRK-----LQDLSGIDPKDIRADDPDVMKLFSGTEILGVTPEQIGT 1116

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
            S     +     + +  ++       P     ++  +   +G +  +     +      T
Sbjct: 1117 STGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIAT 1173

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
               +I     + +  + +G     A  +   + K +  ++ +++      A +       
Sbjct: 1174 LKTVIGCRDDIMVYLMHAGLDPKMAFTIMERVRKGMWLKISEEERNGYIQAMRENNVPDW 1233

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK- 804
             +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A  ++     E     
Sbjct: 1234 YIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIRAKAFELKTMS 1289

Query: 805  ----------------------------------FCQDARQFNIQIMPPSVNTPCV-DFK 829
                                                 +  +         +      +F 
Sbjct: 1290 AGLNAVKTRMEDIKEKRQRNEATNVENDLFTTLEIVNEMLERGFTFGQLDLYKSQATEFL 1349

Query: 830  VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
            +  + +     A++G+G   A+ ++ A  +  F S  +   R     L+  ++E L    
Sbjct: 1350 IEGDTLIPPFIALEGLGENVAKQVVAAREEGEFLSKTELRKR---GGLSSTLVEKL---- 1402

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              D  G      L ++               +   ++F  
Sbjct: 1403 --DEMGI-----LGNMPE-------------DNQLSLFDD 1422



 Score = 87.9 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++  ++D  A+   PA+AITD  N+ S      +A  AGI+ I 
Sbjct: 300 VEFHAHTNMSTMDAMPTVEELIDTAASWGHPAVAITDHANVQSFPHGYHRAKKAGIKAIF 359

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       + N           +V 
Sbjct: 360 GLEANLVEDKVPIVYNSQNLELKEATYVVF 389


>gi|322375786|ref|ZP_08050297.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            sp. C300]
 gi|321279054|gb|EFX56096.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            sp. C300]
          Length = 1463

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 137/977 (14%), Positives = 291/977 (29%), Gaps = 209/977 (21%)

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            + A   G+       L    + N+ + +        +    + V    G + + +LVS  
Sbjct: 587  EAAEKHGV-----TDL---ARLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLS 638

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
                  +   RI  + L +   EGLI+ +  S G +  A        A +    +     
Sbjct: 639  NTK-YFEGVPRIPRTVL-DAHREGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYD---- 692

Query: 180  DRLYVNLQR--------------HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDY 225
               ++ +                     +     ++++      P++AT N  ++  E+ 
Sbjct: 693  ---FIEVMPPAIYAPLIAKEQVKDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEE 749

Query: 226  EAHDV---------LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
               ++         ++          +  P         N       F     A +  +E
Sbjct: 750  IYREIIVRSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEDLARKLVIE 809

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
                 + I +    +         D  ++        KA            I        
Sbjct: 810  NTNVLAEIFEPVEVVKGDLYTPFIDKAEETVAELTYKKAFE----------IYGNPLPDI 859

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
               R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++
Sbjct: 860  VDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVN 918

Query: 397  PLR-----------------------------------------FSLLFERFLNPDRMSM 415
            PL                                            + FE FL  D   +
Sbjct: 919  PLSPHYVCGQCQYSEFITDGSYGSGFDMPNKDCPKCGHKLSKNGQDIPFETFLGFDGDKV 978

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y +  R 
Sbjct: 979  PDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRD 1037

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV-- 533
             +                                 +  ++Q   G+ R    H  GIV  
Sbjct: 1038 AE---------------------------------VERLAQGAAGVKRTTGQHPGGIVVI 1064

Query: 534  IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 +    P+         +   T FN   I++  ++K D LG    T+++K      
Sbjct: 1065 PNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----L 1118

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVS 648
            Q    +D + IP DD     L +    LG+   Q+ +      +     + +  ++    
Sbjct: 1119 QDLSGIDPNEIPMDDEGVMALFSGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET- 1177

Query: 649  LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
               P     ++  +   +G +  +     +          +I     + +  + +G    
Sbjct: 1178 --HPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPK 1235

Query: 709  EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
             A  +   + K +  ++ +++      A K        +     +     Y F K+HAAA
Sbjct: 1236 MAFTIMERVRKGLWLKISEEERNGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAA 1291

Query: 769  YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK------------------------ 804
            Y +++ + A+ K H+P+ +  A  ++     +                            
Sbjct: 1292 YVMMALRVAYFKVHHPIYYYCAYFSIRAKAFDIKTMGAGLDAIKRRMEEIAEKRKNNEAS 1351

Query: 805  -----------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARH 852
                          +  +   +     +      +F +  + +     A+ G+G   A+ 
Sbjct: 1352 NVEIDLYTTLEIVNEMWERGFKFGKLDLYRSDATEFIIDGDTLIPPFVAMDGLGENVAKQ 1411

Query: 853  IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
            ++ A  +  F S  +   R     L+  ++E       +D  G      L ++       
Sbjct: 1412 LVRAREEGEFLSKTELRKR---GGLSSTLVEK------MDEMGI-----LGNMPE----- 1452

Query: 913  QWVEKNRTNKHENIFAH 929
                    +   ++F  
Sbjct: 1453 --------DNQLSLFDD 1461



 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|228477790|ref|ZP_04062418.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            salivarius SK126]
 gi|228250482|gb|EEK09696.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            salivarius SK126]
          Length = 1464

 Score =  189 bits (479), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 128/947 (13%), Positives = 292/947 (30%), Gaps = 185/947 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N ++ ++       V    L V    G + + +LVS    +   +   RI  + L E   
Sbjct: 602  NTELVSEDSYKKSRVKHATLYVQNQTGLKNIFKLVSLSN-VSYFEGVARIPRTVLDEY-R 659

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EG+I+ +  + G +      +    A +    +        ++ +               
Sbjct: 660  EGIIVGSACADGEVFDTLLSHGIDKAVEVAKYYD-------FIEVMPPAIYAPLIAKDLI 712

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRP 246
                        ++++A   + P++AT N  +++ ED    ++++ A+    ++++    
Sbjct: 713  KDEAAIEQLIRDLIEVANRLDKPVLATGNVHYINPEDAIYREIIVRALGQGAMINRPIGK 772

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                       +   +    L +      ++A                 +E    D+   
Sbjct: 773  GENAKPAPLPEAHFRTTNEMLDDFAFLGKDLAYEIVVTNTQAMANQIEEVEVVKKDLYTP 832

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              +    +       R  +  +           R++ EL+ I    F+  +L     +  
Sbjct: 833  FIDRAEEQVAEMTYARAFE--LYGNPLPDIIDLRIEKELSSILGNGFAVIYLASQMLVNR 890

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            + +    VG  RGS   S  A  + IT+++P+                            
Sbjct: 891  SNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYLCPNCQHSEFITDGSYGSGFDLPD 949

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL  D   +PD D++F  D +      V++ +G +   +
Sbjct: 950  KECSECGTEYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEQYAFR 1009

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  + A   V +  +  Y++  R  +                            
Sbjct: 1010 AGTVGTVADRTAYGFV-KGYERDYNKFYRDAE---------------------------- 1040

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNM 560
                 +  ++    G+ R+   H  GIV       +    P+             T FN 
Sbjct: 1041 -----VDRLAMGAAGVKRNTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAAWQTTHFNF 1095

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
              I++  ++K D LG    T+++K      Q    +D   I  DD +   L +    LG+
Sbjct: 1096 HDIDE-NVLKLDILGHDDPTMIRK-----LQDLSGIDPKDIRADDPDVMKLFSGTDILGV 1149

Query: 621  F--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
               Q+ +      +     + +  ++       P     ++  +   +G +  +     +
Sbjct: 1150 TPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDVWLGNAQDL 1206

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
                  T   +I     + +  + +G     A  +   + K +  ++ +++      A +
Sbjct: 1207 IKEGIATLKTVIGCRDDIMVYLMHAGLDPKMAFTIMERVRKGMWLKISEEERNGYIQAMR 1266

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
                    +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A  ++    
Sbjct: 1267 ENNVPDWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIRAKA 1322

Query: 799  VEKIKK-----------------------------------FCQDARQFNIQIMPPSVNT 823
             E                                          +  +         +  
Sbjct: 1323 FELKTMSAGLDAVKARMEDIKEKRQRNEATNVENDLFTTLEIVNEMLERGFTFGQLDLYK 1382

Query: 824  PCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                +F +  + +     A++G+G   A+ ++ A  +  F S  +   R     L+  ++
Sbjct: 1383 SQATEFLIEGDTLIPPFIALEGLGENVAKQVVAAREEGEFLSKTELRKR---GGLSSTLV 1439

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            E L      D  G      L ++               +   ++F  
Sbjct: 1440 EKL------DEMGI-----LGNMPE-------------DNQLSLFDD 1462



 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 40/90 (44%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++ +++D  A+   PA+AITD  N+ S      +A  AGI+ I 
Sbjct: 340 VEFHAHTNMSTMDAMPTVEDLIDTAASWGHPAVAITDHANVQSFPHGYHRAKKAGIKAIF 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       + N           +V 
Sbjct: 400 GLEANLVEDKVPIVYNSQNLELKEATYVVF 429


>gi|55820164|ref|YP_138606.1| DNA polymerase III PolC [Streptococcus thermophilus LMG 18311]
 gi|81561132|sp|Q5M6H0|DPO3_STRT2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|55736149|gb|AAV59791.1| DNA polymerase III alpha subunit [Streptococcus thermophilus LMG
            18311]
          Length = 1464

 Score =  189 bits (479), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 132/955 (13%), Positives = 295/955 (30%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N ++ +        V    L V    G + + +LVS    +   +   RI    L E   
Sbjct: 602  NTELVSDDSYKKSRVKHATLYVQNQTGLKNIFKLVSLSN-VSYFEGVARIPRKVLDEY-R 659

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR----------HRG 191
            EG+I+ +  + G +      +    A +    +        ++ +               
Sbjct: 660  EGIIVGSACADGEVFDTLLSHGIDKAVEVAKYYD-------FIEVMPPAIYAPLIAKDLI 712

Query: 192  YDRYRESQVV----QLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRP 246
             D     Q++    ++A   + P++AT N  +++ ED    ++++ A+    ++++    
Sbjct: 713  KDEEAIEQLIRDLIEVANRLDKPVLATGNVHYINPEDAIYREIIVRALGQGAMINRPIGK 772

Query: 247  RVTPDHYLKNRSEMVSIFSD--------LPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                       +   +               A E  V   +  +  ++    +       
Sbjct: 773  GENAQPAPLPEAHFRTTNEMLDEFAFLGKDLAYEIVVANTQAMANQIEEVEVVKKDLYTP 832

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  +++       KA            +           R++ EL+ I    F+  +L
Sbjct: 833  YIDRAEEQVAEMTYAKAFE----------LYGNPLPDIIDLRIEKELSSILGNGFAVIYL 882

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +  + +    VG  RGS   S  A  + IT+++P+                    
Sbjct: 883  ASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYLCPKCQHSEFITDGSY 941

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  D +      V++ 
Sbjct: 942  GSGFDLPDKECSECGTEYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDI 1001

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G +   +  T G++  + A   V +  +  Y++  R  +                    
Sbjct: 1002 FGEQYAFRAGTVGTVADRTAYGFV-KGYERDYNKFYRDAE-------------------- 1040

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++  + G+ R+   H  GIV       +    P+          
Sbjct: 1041 -------------VDRLAMGVAGVKRNTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAA 1087

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D   I  DD +   L 
Sbjct: 1088 WQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQDLSGIDPKDIRADDPDVMKLF 1141

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +S     +     + +  ++       P     ++  +   +G + 
Sbjct: 1142 SGTEVLGVTPEQIGTSTGVLGIPEFGTNFVRGMVEET---HPTTFAELLQLSGLSHGTDV 1198

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +      T   +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1199 WLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLDPKMAFTIMERVRKGMWLKISEEER 1258

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A +        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1259 NGYIQAMRENNVPDWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1314

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     E                                          +  +    
Sbjct: 1315 YFSIRAKAFELKTMSAGLDAVKARMEDIKEKRQRNEATNLENDLFTTLEIVNEMLERGFT 1374

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A++G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1375 FGQLDLYKSQATEFLIEGDTLIPPFIALEGLGENVAKQLVAAREEGEFLSKTELRKR--- 1431

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E L      D  G      L ++               +   ++F  
Sbjct: 1432 GGLSSTLVERL------DEMGI-----LGNMPE-------------DNQLSLFDD 1462



 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 38/90 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++  ++D  A    PA+AITD  N+ S      KA  AGI+ I 
Sbjct: 340 VEFHAHTNMSTMDAIPTVEELIDTAAFWGHPAVAITDHANVQSFPHGYHKAKKAGIKAIF 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       + N           +V 
Sbjct: 400 GLEANLVEDKVPIVYNSENLELKEATYVVF 429


>gi|309807104|ref|ZP_07701083.1| DNA polymerase III subunit alpha domain protein [Lactobacillus iners
            LactinV 03V1-b]
 gi|308166534|gb|EFO68734.1| DNA polymerase III subunit alpha domain protein [Lactobacillus iners
            LactinV 03V1-b]
          Length = 393

 Score =  189 bits (479), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 107/362 (29%), Positives = 184/362 (50%), Gaps = 17/362 (4%)

Query: 673  SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF 732
               P++  +LK T G+IIYQEQVM+ AQ+ +G+SL EAD+LRRA+  K   EM K    F
Sbjct: 3    YPDPVLINLLKPTYGIIIYQEQVMKTAQIYAGFSLGEADLLRRAISSKDSIEMKKIGVDF 62

Query: 733  ISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
            ++ A K G S + A +IFE + KF++YGFNKSH+ AY+ +SY  A++K HYP +F  A +
Sbjct: 63   VNRAVKQGHSASAASSIFEYILKFSNYGFNKSHSVAYSKMSYLLAYLKVHYPKQFYVALL 122

Query: 793  TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTAR 851
               + + +K+ K+  D +  NI+I  P +N    +F + D   I   L +I G+      
Sbjct: 123  NSNIYDKQKVTKYIMDLKMDNIKITLPDINYSKRNFYISDKGEIVTGLDSIIGLRMDFVE 182

Query: 852  HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKY 911
             IM     +P  SL DF  ++D+K L+  ++ +L+ +GA D    +R  LL S  ++   
Sbjct: 183  QIMNL--QRPIKSLTDFLWKIDTKYLSPDMIGNLIKSGAFDKLHKNRSALLASYKDLLIC 240

Query: 912  AQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVY 971
             +      +  +  +F   +    D        + +++ + E E  VLGF     P+   
Sbjct: 241  IK-----MSGGNNVLFQALEPKELD------IKMPSNAQKEEWETSVLGFSPQIDPILAA 289

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +   +K G K + +      G ++     ++  +   T+   ++ +  F++  +  +   
Sbjct: 290  QIYAKKYGFKPFSDFTFYDEGVSV---GKMMDIKVITTKNNKKMAFAKFNDLHETVDFVI 346

Query: 1032 FP 1033
            FP
Sbjct: 347  FP 348


>gi|167746785|ref|ZP_02418912.1| hypothetical protein ANACAC_01497 [Anaerostipes caccae DSM 14662]
 gi|167653745|gb|EDR97874.1| hypothetical protein ANACAC_01497 [Anaerostipes caccae DSM 14662]
          Length = 1475

 Score =  189 bits (479), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 151/924 (16%), Positives = 290/924 (31%), Gaps = 182/924 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F Q      I        D+D  +     ++           ++LV    G   L  L
Sbjct: 605  IKFVQMLEEKEI-------FDLDQVNEFVAGSEDFIKKGRTYHGIILVKNNTGRVNLNRL 657

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  ++     +  R+  S + +   EGLI+ +   +G +  A     S+    +++ F 
Sbjct: 658  VSESHVR-YFNRRPRMPKSLINKY-REGLIIGSACEAGELYSAIVDQRSEEEIAKIVEFY 715

Query: 176  KLFGDRLYVNLQ------------RHR---GYDRYRE--SQVVQLAYTHELPLVATNNSL 218
                   Y+ +Q            RH     ++  R    ++V+L  T   P+ AT +  
Sbjct: 716  D------YLEIQPEGNNQFMIESARHENVSSFEDIRNFNRKIVELGETFRKPVAATCDVH 769

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            FL  +D     +LMA         K          L  R+    +        +   E+ 
Sbjct: 770  FLDPDDSIYRAILMAG--------KGFKDADSQPPLYFRTTEEMLHEFEYLGSDKAREVV 821

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
                  +      +      +C  + +  + +LR+                         
Sbjct: 822  ITNPNKISDQIENISPIHPDKCPPVIENSDRDLRDICYKKAHDIYGPNL------PDIVT 875

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             RLD ELN I    ++  ++I    +  +  +   VG  RGS   S  A    IT+++PL
Sbjct: 876  TRLDKELNSIIGNGYAVMYIIAQKLVWDSLDHGYLVG-SRGSVGSSFAATMSGITEVNPL 934

Query: 399  R-----------------------------------------------FSLLFERFLNPD 411
                                                              + FE FL   
Sbjct: 935  PAHYICPECYYVDFDSPEVKKYARMGMSGCDMPDAVCPKCGAKLNKEGHDIPFETFLGFK 994

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
                PD D++F  + + +   YV+  +G  +  +  T G+L  K A   V + L+     
Sbjct: 995  GDKEPDIDLNFSGEYQSKAHAYVEVIFGKGKAYRAGTIGTLAEKTAYGYVLKYLE----- 1049

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                                          R        +  +++   G+ R    H  G
Sbjct: 1050 -----------------------------EREISKRKCEIERLAKGCTGVKRTTGQHPGG 1080

Query: 532  IVIGDRP--LSQLVPMYRDVRS--DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            I++      +     + R         +T         + L+K D LG    +++++  D
Sbjct: 1081 IIVVPHDKEIYDFTAVQRPANDVRSPIITTHYEYHSIDSNLLKLDILGHDDPSMIRRLED 1140

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
                    V+   IP DD     L      LGI   +  G +    G+     + +I ++
Sbjct: 1141 LT-----GVNAQNIPLDDKSVMSLFHGTEVLGITPEQIGGTKLGSLGIPEFGTDFVIQML 1195

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
                P    ++V  +   +G +  +     +      T    I     + +  +  G   
Sbjct: 1196 LDTNPQSFSDLVRISGLSHGTDVWLGNAQKLIEEGDATISTSICTRDDIMVYLINQGLDE 1255

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            + +  +  ++ K    + ++++             +      +    K   Y F K+HA 
Sbjct: 1256 ALSFTIMESVRKGKGLKPEQEEAMR----------EKDVPEWYIWSCKQIKYMFPKAHAV 1305

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC--------------------- 806
            AY +++++ AW K  +P+ + AA  ++                                 
Sbjct: 1306 AYVMMAWRIAWFKVFHPLAYYAAYFSIRAKAFSYEDMCMGKEKLNNRMKEIQNTPKFEVK 1365

Query: 807  -------------QDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARH 852
                          +      + MP  +      DF++ D +I    +AI G+G   A+ 
Sbjct: 1366 NADLDLLREMKIADEMYARGFEFMPLDIYRAKAKDFQIIDGKIMPPYSAIDGMGEKAAKE 1425

Query: 853  IMEASADKPFDSLEDFCSRVDSKK 876
              EAS  +PF S+E+F  R  + K
Sbjct: 1426 AAEASKGEPFTSMENFRDRTKTPK 1449



 Score = 69.0 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 6/75 (8%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL---EFSQKAC---AA 65
           V L +H+  S  +  + +N+I+ +      PA+AITD   L +        +        
Sbjct: 358 VELHLHTVMSDNDSVVQINDIVKRAYEWGHPAVAITDHGVLQAFPIARHAYEDLRLPQDD 417

Query: 66  GIQPIIGCQLDIDMQ 80
             + I G +      
Sbjct: 418 PFKIIYGVEAYFVDD 432


>gi|225856031|ref|YP_002737542.1| DNA polymerase III PolC [Streptococcus pneumoniae P1031]
 gi|225725805|gb|ACO21657.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae P1031]
          Length = 1463

 Score =  189 bits (479), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 134/955 (14%), Positives = 285/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +  A        A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKNLIEIGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPNKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNEIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NDYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVERDLSEATYVVF 428


>gi|317471587|ref|ZP_07930931.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
 gi|316900902|gb|EFV22872.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
          Length = 1478

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 150/929 (16%), Positives = 291/929 (31%), Gaps = 184/929 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F Q      I        D+D  +     ++           ++LV    G   L  L
Sbjct: 608  IKFVQMLEEKEI-------FDLDQVNEFVAGSEDFIKKGRTYHGIILVKNNTGRVNLNRL 660

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            VS  ++     +  R+  S + +   EGLI+ +   +G +  A     S+    +++ F 
Sbjct: 661  VSESHVR-YFNRRPRMPKSLINKY-REGLIIGSACEAGELYSAIVDQRSEEEIAKIVEFY 718

Query: 176  KLFGDRLYVNLQ------------RHR---GYDRYRE--SQVVQLAYTHELPLVATNNSL 218
                   Y+ +Q            RH     ++  R    ++V+L  T   P+ AT +  
Sbjct: 719  D------YLEIQPEGNNQFMIESARHENVCSFEDIRNFNRKIVELGETFRKPVAATCDVH 772

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            FL  +D     +LMA         K          L  R+    +        +   E+ 
Sbjct: 773  FLDPDDSIYRAILMAG--------KGFKDADSQPPLYFRTTEEMLHEFEYLGSDKAREVV 824

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
                  +      +      +C  + +  + +LR+                         
Sbjct: 825  ITNPNKISDQIENISPIHPDKCPPVIENSDRDLRDICYKKAHDIYGPNL------PDIVT 878

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             RLD ELN I    ++  ++I    +  +  +   VG  RGS   S  A    IT+++PL
Sbjct: 879  TRLDKELNSIIGNGYAVMYIIAQKLVWDSLDHGYLVG-SRGSVGSSFAATMSGITEVNPL 937

Query: 399  R-----------------------------------------------FSLLFERFLNPD 411
                                                              + FE FL   
Sbjct: 938  PAHYICPECYYVDFDSPEVKKYARMGMSGCDMPDAVCPKCGAKLNKEGHDIPFETFLGFK 997

Query: 412  RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
                PD D++F  + + +   YV+  +G  +  +  T G+L  K A   V + L+     
Sbjct: 998  GDKEPDIDLNFSGEYQSKAHAYVEVIFGKGKAYRAGTIGTLAEKTAYGYVLKYLE----- 1052

Query: 472  VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                                          R        +  +++   G+ R    H  G
Sbjct: 1053 -----------------------------EREISKRKCEIERLAKGCTGVKRTTGQHPGG 1083

Query: 532  IVIGDRP--LSQLVPMYRDVRS--DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            I++      +     + R         +T         + L+K D LG    +++++  D
Sbjct: 1084 IIVVPHDKEIYDFTAVQRPANDVRSPIITTHYEYHSIDSNLLKLDILGHDDPSMIRRLED 1143

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
                    V+   IP DD     L      LGI   +  G +    G+     + +I ++
Sbjct: 1144 LT-----GVNAQNIPLDDKSVMSLFHGTEVLGITPEQIGGTKLGSLGIPEFGTDFVIQML 1198

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
                P    ++V  +   +G +  +     +      T    I     + +  +  G   
Sbjct: 1199 LDTNPQSFSDLVRISGLSHGTDVWLGNAQKLIEEGDATISTSICTRDDIMVYLINQGLDE 1258

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
            + +  +  ++ K    + ++++             +      +    K   Y F K+HA 
Sbjct: 1259 ALSFTIMESVRKGKGLKPEQEEAMR----------EKDVPEWYIWSCKQIKYMFPKAHAV 1308

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFC--------------------- 806
            AY +++++ AW K  +P+ + AA  ++                                 
Sbjct: 1309 AYVMMAWRIAWFKVFHPLAYYAAYFSIRAKAFSYEDMCMGKEKLNNRMKEIQNTPKFEVK 1368

Query: 807  -------------QDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARH 852
                          +      + MP  +      DF++ D +I    +AI G+G   A+ 
Sbjct: 1369 NADLDLLREMKIADEMYARGFEFMPLDIYRAKAKDFQIIDGKIMPPYSAIDGMGEKAAKE 1428

Query: 853  IMEASADKPFDSLEDFCSR--VDSKKLNR 879
              EAS  +PF S+E+F  R       +++
Sbjct: 1429 AAEASKGEPFTSMENFRDRTKAPKSVVDK 1457



 Score = 69.0 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 6/75 (8%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL---EFSQKAC---AA 65
           V L +H+  S  +  + +N+I+ +      PA+AITD   L +        +        
Sbjct: 361 VELHLHTVMSDNDSVVQINDIVKRAYEWGHPAVAITDHGVLQAFPIARHAYEDLRLPQDD 420

Query: 66  GIQPIIGCQLDIDMQ 80
             + I G +      
Sbjct: 421 PFKIIYGVEAYFVDD 435


>gi|157150704|ref|YP_001451113.1| DNA polymerase III PolC [Streptococcus gordonii str. Challis substr.
            CH1]
 gi|157075498|gb|ABV10181.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            gordonii str. Challis substr. CH1]
          Length = 1462

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 135/955 (14%), Positives = 287/955 (30%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-------- 193
            EGLI+ +  S G +  A        A +    +        ++ +     Y+        
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYEPLIAKEQI 710

Query: 194  ------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 711  KDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 770

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
              + +  P         N       F     A +  +    + +   +    +       
Sbjct: 771  GENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQLAETFEPVEVVKGDLYTP 830

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 831  FIDKAEETVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 880

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 881  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSY 939

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 940  GSGFDMPDKDCPKCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 999

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1000 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1038

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1039 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1085

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1086 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPTDIPMDDPGVMALF 1139

Query: 613  TTKGTLGIFQ--LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+ Q  + +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1140 SGTDILGVTQEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1196

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  +  G     A  +   + K +  ++ +++ 
Sbjct: 1197 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGLDPKMAFTIMERVRKGLWLKISEEER 1256

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1257 NGYIAAMKENNVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1312

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1313 YFSIRAKAFDIKTMSGGLDAVKRRMSEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFK 1372

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +    +A+ G+G   AR ++ A  +  F S  +   R   
Sbjct: 1373 FGKLDLYKSHATEFLIEGDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR--- 1429

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1430 GGLSSTLVEK------MDDMGI-----LGNMPE-------------DNQLSLFDE 1460



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  AGIQ I 
Sbjct: 338 VEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKKAGIQLIY 397

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I       + N+          +V 
Sbjct: 398 GMEANIVEDRVPIVYNEVDMALSDATYVVF 427


>gi|312862610|ref|ZP_07722851.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            vestibularis F0396]
 gi|311101870|gb|EFQ60072.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            vestibularis F0396]
          Length = 1464

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 128/947 (13%), Positives = 294/947 (31%), Gaps = 185/947 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N ++ ++       V    L V    G + + +LVS    +   +   RI  + L E   
Sbjct: 602  NTELVSEDSYKKSRVKHATLYVQNQTGLKNIFKLVSLSN-VSYFEGVARIPRTVLDEY-R 659

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EG+I+ +  + G +      +    A +    +        ++ +               
Sbjct: 660  EGIIVGSACADGEVFDTLLSHGIDKAVEVAKYYD-------FIEVMPPAIYAPLIAKDLI 712

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRP 246
                        ++++A   + P++AT N  +++ ED    ++++ A+    ++++    
Sbjct: 713  KDEAAIEQLIRDLIEVANRLDKPVLATGNVHYINPEDAIYREIIVRALGQGAMINRPIGK 772

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                       +   +    L +      ++A +               +E    D+   
Sbjct: 773  GENAKPAPLPEAHFRTTNEMLDDFAFLGKDLAYKIVVTNTQAMADQIEEVEVVKKDLYTP 832

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              +    +       +  +  +           R++ EL+ I    F+  +L     +  
Sbjct: 833  FIDRAEEQVAEMTYAKAFE--LYGNPLPDIIDLRIEKELSSILGNGFAVIYLASQMLVNR 890

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            + +    VG  RGS   S  A  + IT+++P+                            
Sbjct: 891  SNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYLCPKCQHSEFITDGSYGSGFDLPD 949

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL  D   +PD D++F  D +      V++ +G +   +
Sbjct: 950  KECSECGTEYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEQYAFR 1009

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  + A   V +  +  Y++  R  +                            
Sbjct: 1010 AGTVGTVADRTAYGFV-KGYERDYNKFYRDAE---------------------------- 1040

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNM 560
                 +  ++    G+ R+   H  GIV       +    P+             T FN 
Sbjct: 1041 -----VDRLAMGAAGVKRNTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAAWQTTHFNF 1095

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
              I++  ++K D LG    T+++K      Q    +D   I  DD +   L +    LG+
Sbjct: 1096 HDIDE-NVLKLDILGHDDPTMIRK-----LQDLSGIDPKDIRADDPDVMKLFSGTEILGV 1149

Query: 621  F--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
               Q+ +S     +     + +  ++       P     ++  +   +G +  +     +
Sbjct: 1150 TPEQIGTSTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDVWLGNAQDL 1206

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
                  T   +I     + +  + +G     A  +   + K +  ++ +++      A +
Sbjct: 1207 IKEGIATLKTVIGCRDDIMVYLMHAGLDPKMAFTIMERVRKGMWLKISEEERNGYIQAMR 1266

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
                    +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A  ++    
Sbjct: 1267 ENNVPDWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIRAKA 1322

Query: 799  VEKIKK-----------------------------------FCQDARQFNIQIMPPSVNT 823
             E                                          +  +         +  
Sbjct: 1323 FELKTMSAGLNAVKTRMEDIKEKRQRNEATNVENDLFTTLEIVNEMLERGFTFGQLDLYK 1382

Query: 824  PCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
                +F +  + +     A++G+G   A+ ++ A  +  F S  +   R     L+  ++
Sbjct: 1383 SQATEFLIEGDTLIPPFIALEGLGENVAKQVVAAREEGEFLSKTELRKR---GGLSSTLV 1439

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            E L      D  G      L ++               +   ++F  
Sbjct: 1440 EKL------DEMGI-----LGNMPE-------------DNQLSLFDD 1462



 Score = 87.9 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++  ++D  A+   PA+AITD  N+ S      +A  AGI+ I 
Sbjct: 340 VEFHAHTNMSTMDAMPTVEELIDTAASWGHPAVAITDHANVQSFPHGYHRAKKAGIKAIF 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       + N           +V 
Sbjct: 400 GLEANLVEDKVPIVYNSQNLELKEATYVVF 429


>gi|289167137|ref|YP_003445404.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6]
 gi|288906702|emb|CBJ21536.1| DNA polymerase III, alpha subunit [Streptococcus mitis B6]
          Length = 1463

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 284/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NVDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +  A        A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDAVLSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     +   +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENPNALAETFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPNKDCPKCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNEIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLDAIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEKDLSEATYVVF 428


>gi|312865553|ref|ZP_07725780.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            downei F0415]
 gi|311099071|gb|EFQ57288.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            downei F0415]
          Length = 1468

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 141/973 (14%), Positives = 296/973 (30%), Gaps = 196/973 (20%)

Query: 58   FSQKACAA-GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F ++A    GI       L      N K+ ++       V    + V    G + + +LV
Sbjct: 589  FIKEARENRGI-----TDL---ADLNTKLVSEDSYKKARVKHATIYVQNQTGLKNIFKLV 640

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S   +    +   RI  + L +   EGL++ +  S G +  A   +    A +    +  
Sbjct: 641  SLSNVK-YFEGVARIPRTVLDQY-REGLLLGSACSEGEVFDAVLSHGLDKALEVAKYYDF 698

Query: 175  KKLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    +Y       L ++          ++++      P++AT +  +L  ED    +
Sbjct: 699  IEVMPPAIYRPLIARELIKNEEGIEQVIKDLIEVGRRLNKPVLATGDVHYLEPEDQLYRE 758

Query: 230  VLMAVAH---------STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            +++                   +  P         N       F     A E  V   ++
Sbjct: 759  IIVRSLGPGALINRPIGRGEGAQPAPLPDAHFRTTNEMLDDFAFLGEDLAYEIVVTNTQK 818

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +   +    +         D  ++              +       I          +R
Sbjct: 819  FAEQFEEVEVVKTDLYTPYIDKAEETVAE----------KTYARAFEIYGNPLPDIIDRR 868

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            ++ EL  I    F+  +L     +  + K    VG  RGS   S  A  + IT+++P+  
Sbjct: 869  IEKELTSILGNGFAVIYLASQMLVDRSNKRGYLVG-SRGSVGSSFVATMIGITEVNPMPP 927

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL  D   +PD D
Sbjct: 928  HYVCPECQYSEFIADGSVGSGFDLPDKDCPNCGHKLTKDGHDIPFETFLGFDGDKVPDID 987

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +      V++ +G E   +  T G++  K A   V                  
Sbjct: 988  LNFSGDDQPSAHLDVRDIFGEEYAFRAGTVGTVAEKTAYGFVK----------------- 1030

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDR 537
                 +         ++                  +    G+ R    H  GIV      
Sbjct: 1031 ----GYERDYNKFYREAEVDRL-------------AMGSAGVKRTTGQHPGGIVVIPNYM 1073

Query: 538  PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+         +   T FN   I++  ++K D LG    T+++K      Q   
Sbjct: 1074 DVYDFTPVQYPADDTSAEWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQDLS 1127

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +D S IP DD +   L +    LG+   Q+ +      +     + +  ++       P
Sbjct: 1128 GIDPSQIPADDPDVMKLFSGTDVLGVTEEQIGTPTGMLGIPEFGTNFVRGMVNET---HP 1184

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                 ++  +   +G +  +     +      T   +I     + +  + +G     A +
Sbjct: 1185 TTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFI 1244

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K +  ++ +++      A ++       +     +     Y F K+HAAAY ++
Sbjct: 1245 IMERVRKGMWLKIPEEERNGYIQAMRDNNVPDWYIESCGKI----KYMFPKAHAAAYVMM 1300

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---------------------------- 804
            + + A+ K H+P+ +  A  ++     E                                
Sbjct: 1301 ALRVAYFKVHHPIYYYCAYFSIRAKAFELKTMSAGLDAVKARMEDIASKRKNNEASNVEI 1360

Query: 805  -------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                      +  +   +     +      +FK+  + +     A+ G+G   A+ I+ +
Sbjct: 1361 DLYTTLEIVNEMLERGYKFGQLDLYNSEASEFKIEGDTLIPPFVAMDGLGENVAKQIVAS 1420

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
             AD  F S  +   R     ++  ++E       +D  G      L ++           
Sbjct: 1421 RADGEFLSKTELRKR---GGVSATLVEK------MDDMGI-----LGNMPE--------- 1457

Query: 917  KNRTNKHENIFAH 929
                +   ++F  
Sbjct: 1458 ----DNQLSLFDD 1466



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++  ++DK A+   PAIAITD  N+ S      +A  AGI+ I 
Sbjct: 344 VEFHAHTNMSTMDALPTVEELIDKAASWGHPAIAITDHANVQSFPHGYHRAKKAGIKAIF 403

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 404 GLEANIVEDRVPITYNEVPMDLHEATYVVF 433


>gi|261885746|ref|ZP_06009785.1| DNA polymerase III subunit alpha [Campylobacter fetus subsp.
            venerealis str. Azul-94]
          Length = 401

 Score =  188 bits (476), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 1/195 (0%)

Query: 839  LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
            +AAIKGVG      I++A  D PF+S++ F S+ D   +NRRV ESL+ +GA D FG++R
Sbjct: 1    MAAIKGVGVGAVEDIIKAREDGPFESVDSFISKTDCTTVNRRVFESLIKSGAFDDFGFTR 60

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF-SVENSSVRFENEQR 957
              L+ +L+ I + ++ +   + N   ++F+ +       + L       +     + EQ 
Sbjct: 61   KMLIHNLETIIENSKRISDIKKNATNSLFSDDDSMSEISVDLVNIKDEFDKKEILKFEQE 120

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            +LG Y SGHPLD Y+  + K+      E      G+ I +   +     K T+ G ++  
Sbjct: 121  ILGVYVSGHPLDEYRDKIDKINYTVSSEFENVEDGSEILVVGKIEDTTTKITKTGKKMAI 180

Query: 1018 VTFSEPAKEYEANFF 1032
            +   +     EA  F
Sbjct: 181  INILDIHGNIEATAF 195



 Score = 47.5 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 5/62 (8%), Positives = 20/62 (32%)

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            ++     +     ++     + + I +   +     + T+ G  +  +   + +   E  
Sbjct: 259  FQNYFDTIKHATIKDIPNLTKESEILIIGKMSHINIRTTKSGMEMAILNIVDISGNSEMI 318

Query: 1031 FF 1032
             F
Sbjct: 319  AF 320


>gi|75758944|ref|ZP_00739054.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74493545|gb|EAO56651.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 420

 Score =  188 bits (476), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 207/365 (56%), Gaps = 3/365 (0%)

Query: 496 SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
              +E +       RL E++ ++E + R    HA G++I   P++  V + R  +    +
Sbjct: 8   EEIKEVKAYAKRYPRLFELALEVESMPRTQGIHACGMLITAEPITNEVALVRG-KGGESI 66

Query: 556 TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTT 614
             ++   +E  G IKFDFLGLK L++++     +  R    +D+  +  +D +T+ ++  
Sbjct: 67  AGYDGPTLEAKGYIKFDFLGLKNLSVVELCRRMVEDRYGYLIDVDNLIPEDQKTFDMIQR 126

Query: 615 KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
             T G+FQ+ES GM++   G+     E +IA VSLYRPGP+D I  Y    NG E++  +
Sbjct: 127 GETDGVFQIESDGMKKMFMGLNKVDFETLIAGVSLYRPGPMDYIPKYTALANGHEEVPQV 186

Query: 675 HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
           HP  D + + T  ++IYQEQVMQ++  ++GYS  EADVLR+A+GKK  E ++   E   +
Sbjct: 187 HPAFDEITRNTFSIMIYQEQVMQVSTEMAGYSKGEADVLRKAVGKKKIEILEPALEELHN 246

Query: 735 GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             ++N +   +A  I + +  FA Y FN+SHAA YA I+YQTA++K +YP+E++ A + +
Sbjct: 247 RLTQNNVPTQVATKICDDIRPFAGYAFNRSHAACYAYIAYQTAYLKANYPLEYMTALLQV 306

Query: 795 EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG-DNRIYYSLAAIKGVGTTTARHI 853
                +K+ K  +  R   I+++PP +N   + F +  +N I + L AIKG+G  T   I
Sbjct: 307 FYTEEDKVVKLVKVIRDMGIEVLPPDINRSEIGFTIEGENAIRFGLGAIKGLGEATLEAI 366

Query: 854 MEASA 858
           +E   
Sbjct: 367 IEERK 371


>gi|262283487|ref|ZP_06061253.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA]
 gi|262260978|gb|EEY79678.1| DNA polymerase III PolC [Streptococcus sp. 2_1_36FAA]
          Length = 1462

 Score =  188 bits (476), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 135/955 (14%), Positives = 287/955 (30%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-------- 193
            EGLI+ +  S G +  A        A +    +        ++ +     Y+        
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYEPLIAKEQI 710

Query: 194  ------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 711  KDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 770

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
              + +  P         N       F     A +  +    + +   +    +       
Sbjct: 771  GENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQLAETFEPVEVVKGDLYTP 830

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 831  FIDKAEETVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 880

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 881  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSY 939

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 940  GSGFDMPDKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 999

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1000 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1038

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1039 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1085

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1086 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPTDIPMDDPGVMALF 1139

Query: 613  TTKGTLGIFQ--LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+ Q  + +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1140 SGTDILGVTQEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1196

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  +  G     A  +   + K +  ++ +++ 
Sbjct: 1197 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGLDPKMAFTIMERVRKGLWLKISEEER 1256

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1257 NGYIAAMKENNVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1312

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1313 YFSIRAKAFDIKTMSGGLDAVKRRMNEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFK 1372

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +    +A+ G+G   AR ++ A  +  F S  +   R   
Sbjct: 1373 FGKLDLYKSHATEFLIEGDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR--- 1429

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1430 GGLSSTLVEK------MDDMGI-----LGNMPE-------------DNQLSLFDE 1460



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  AGIQ I 
Sbjct: 338 VEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKKAGIQLIY 397

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I       + N+          +V 
Sbjct: 398 GMEANIVEDRVPIVYNEVDMALSDATYVVF 427


>gi|331082627|ref|ZP_08331750.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330400246|gb|EGG79888.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 1487

 Score =  188 bits (476), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 148/919 (16%), Positives = 289/919 (31%), Gaps = 183/919 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F +      I        ++D  +     +            ++L     G   L  L
Sbjct: 619  VKFIEMCAERDI-------FNLDELNEKGTVSVHSIQKMPTYHAIILAKNDVGRVNLYHL 671

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +S  +L+    +  RI  S   +   EGL++ +   +G + +A      +    RL+ F 
Sbjct: 672  ISDSHLI-YYHRRPRIPKSLFLKY-QEGLLIGSACEAGELYQAVLNGRPEQEIARLVNFY 729

Query: 176  KLFGDRLYVNLQRHR-----------------GYDRYRESQVVQLAYTHELPLVATNNSL 218
                   Y+ +Q                       +    ++V+L      P+V T +  
Sbjct: 730  D------YLEIQPLGNNAFMLKNEDRSDITSWEDLQEINKKIVKLGEAFNKPVVGTCDVH 783

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            FL  ED     ++MA                 D           +  +         E  
Sbjct: 784  FLDPEDEVYRRIIMA---------GKGFDDADDQAPLYLRTTEEMLKEFSYLGREKAEEI 834

Query: 279  RRC-SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
                   +      +    + +C  + +  +  LR    +       +         +  
Sbjct: 835  VITNPNKIADMVEKISPIHKGKCPPVIENSDAMLREICYSKAHEIYGENL------PEMV 888

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
              RL+ ELN I    ++  ++I    +  +  +   VG  RGS   S  A    IT+++P
Sbjct: 889  EARLERELNSIISNGYAVMYMIAQKLVWKSNSDGYLVG-SRGSVGSSFAATMSGITEVNP 947

Query: 398  LR---------------------------------------------FSLLFERFLNPDR 412
            L                                              F + FE FL    
Sbjct: 948  LSPHYYCAKCYYADFDSEEVRAYSGRAGCDMPDKKCPVCGEPLVKEGFDIPFETFLGFKG 1007

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
               PD D++F  D + +  RYV+  +G  +  +  T G+L  K A   V    +      
Sbjct: 1008 DKEPDIDLNFSGDYQGKAHRYVEVIFGAGQTFKAGTIGTLAEKTAFGYVKNYYE------ 1061

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
                                         R        +  I Q   G+ R    H  GI
Sbjct: 1062 ----------------------------ERGQRKRYCEINRIVQGCTGVRRTTGQHPGGI 1093

Query: 533  VIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            ++      + +  P+     D+ SD+  T F+   I+   L+K D LG    T+++    
Sbjct: 1094 IVLPIGWDIEEFTPVQHPANDMNSDIITTHFDYHSIDS-NLLKLDILGHDDPTMIR---- 1148

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
             + +    ++   IP D  E   L      LGI   +  G      G+     +  + ++
Sbjct: 1149 -MLEDLTGINAREIPLDSKEVMSLFKNTDALGITPDDIRGCPLGCLGIPEFGTDFAMQML 1207

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
                P    ++V  +   +G +  +     +      T    I     + I  +  G   
Sbjct: 1208 IDANPTSFSDLVRISGLSHGTDVWLGNAQDLIKSGTATITTCICTRDDIMIYLINKGLEH 1267

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             +A  +  ++ K    + +     +I    K+ +      +  ++      Y F K+HAA
Sbjct: 1268 GQAFTIMESVRKGKGLKPE-----WIEEMKKHDVPDWYIESCKKI-----KYMFPKAHAA 1317

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLE-------------------------------- 795
            AY ++ ++ A+ K  +P+ + AA  ++                                 
Sbjct: 1318 AYVMMGWRIAYCKIFHPLAYYAAYFSIRATAFSYELMCQGKEKLEYFMDDYEKRKDTLSK 1377

Query: 796  -MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHI 853
               +  K  +  Q+        +P  +       F++ D ++  +L  I+G+G   A  +
Sbjct: 1378 KEQDTYKDMRIVQEMYARGFDFVPIDIYKANAHTFQIIDGKLMPALDTIEGLGDRAADAV 1437

Query: 854  MEASADKPFDSLEDFCSRV 872
            + A+ +  F SL+DF +R 
Sbjct: 1438 VAAAEEGNFLSLDDFRNRT 1456



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 10/95 (10%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-------- 63
           V L  H+  S ++G      ++ +       AIAITD   + +  E              
Sbjct: 370 VELHCHTKMSDMDGVSDAKALIKRAYEWGHKAIAITDHGVVQAFPEA-NHCFDSWGGVVP 428

Query: 64  -AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
             A  + I G +  +       + N          
Sbjct: 429 PEADFKVIYGVEAYLVDDLKGIVQNSKGQSLHAPY 463


>gi|313885310|ref|ZP_07819061.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus
            coleocola ACS-139-V-Col8]
 gi|312619416|gb|EFR30854.1| DNA polymerase III, alpha subunit, Gram-positive type [Eremococcus
            coleocola ACS-139-V-Col8]
          Length = 1435

 Score =  188 bits (476), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 139/901 (15%), Positives = 287/901 (31%), Gaps = 162/901 (17%)

Query: 71   IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
             G +     Q N ++               LLV   +G + L  LVS   +     +  R
Sbjct: 587  FGME--YHHQLNNQLGQGDAFKQARPMHATLLVKEQDGLKDLFRLVSESNIH-YYHRVPR 643

Query: 131  ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYVNLQR 188
            +  S L +   + L++ T  S G +  A        A++    +   ++     Y+ L  
Sbjct: 644  VPRSILNKY-RQHLLVGTACSEGEVFTAMMQKGYDEAKELAKYYDFIEIMPKGAYLPLLH 702

Query: 189  ----HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
                H   +     + + ++      P+VAT N  +L E+D    +V+       +   +
Sbjct: 703  DENIHSEKELEEIIANLYRMGKELNKPVVATGNVHYLDEKDAIYREVVQ--RSLKINQSR 760

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            D           +       F     A E  V  ++  +  ++    +         +  
Sbjct: 761  DLVLPQVHFRTTDEMLDEFAFLGEEIAYEVVVTNSQAIADSIETIKVVKDELYAPRIEG- 819

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                E+E+             Q         +   +R++ ELN I    F+  +LI    
Sbjct: 820  ---AEDEITQLTYQRAHELYGQDL------PEIVEKRIEKELNSIINNGFAIMYLIAQKL 870

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------ 399
            +  + ++   VG  RGS   S+ A    IT+++PL                         
Sbjct: 871  VHKSNQDGYLVG-SRGSVGSSLVATFTGITEVNPLAPHYHCPNCQYSEFYTQGEYGSGFD 929

Query: 400  -----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
                               + FE FL  +   +PD D++F  D + +   Y +  +G + 
Sbjct: 930  LPNKACPKCGAQLAKDGHDIPFETFLGFNGDKVPDIDLNFSGDYQAQAHAYTKVLFGEDY 989

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            V +  T G++ AK AL  V               +       H +               
Sbjct: 990  VYKAGTIGTVAAKTALGYV---------------RGYIESVGHQLPQAEKER-------- 1026

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS---DLPVTQ 557
                       ++  +EG+ R    H  GI  +     +    P+         D   T 
Sbjct: 1027 -----------LAYGIEGVRRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDSSADWRTTH 1075

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGT 617
            F+   I+       + L L  L     ++  + Q    +D + IP DD +   L +    
Sbjct: 1076 FDFHSIDA------NVLKLDILGHDDPTVIRMLQDLSGIDPTTIPTDDADVMKLFSGTEI 1129

Query: 618  LGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
            LG+   Q+ S      +     + +  +++          + + +          + +  
Sbjct: 1130 LGVTPEQIYSDTGTLGIPEFGTNFVRGMVSETKP--KTFAELLQISGLSHGTDVWLGNAQ 1187

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
             LI   +     VI  ++ +M       G   + A  +   + K      D     +   
Sbjct: 1188 ELIKNNVVPLAKVIGCRDDIMVTLIQW-GMEEALAFKIMEHVRKGKGIPDD-----WQDK 1241

Query: 736  ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              +  + +    +  ++      Y F K+HAAAY +++ + A+ K H+P+ +  A  ++ 
Sbjct: 1242 MREAKVPEWYIDSCLKI-----KYMFPKAHAAAYVLMALRVAYFKVHHPLYYYCAYFSVR 1296

Query: 796  MDNVEKIKKFC---------------------------------QDARQFNIQIMPPSVN 822
              +V+ +  +                                   +  +         + 
Sbjct: 1297 AKDVDIVAMYQGKEMVKRRIKEINEKGNDASNKEKELIVELYIANEMLERGYHFKMVDLE 1356

Query: 823  TPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                 ++ +  + +      I G+G + A  I++A ++  F S ED   R    K+++ +
Sbjct: 1357 KSQARNYVIESDSLIPPFKTIPGLGASVADQIVQARSEASFLSKEDLSKR---GKVSKSL 1413

Query: 882  L 882
            +
Sbjct: 1414 I 1414



 Score = 97.2 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S L+   S  +I+ + AA   PA+AITD   + +  E    A    I+ I 
Sbjct: 334 VELHAHTQMSTLDATNSAKDIIKQAAAWGHPAVAITDHATVQAFPEAYHAAQDNNIKVIY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G +  +         N  +        +V 
Sbjct: 394 GVEAYLVNDGEPVAYNPKEIALKEATYVVF 423


>gi|270292055|ref|ZP_06198270.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            sp. M143]
 gi|270279583|gb|EFA25425.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            sp. M143]
          Length = 1463

 Score =  187 bits (475), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 134/955 (14%), Positives = 284/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +  A        A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A    +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELAHRLVIENTNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPNKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNEIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLDAIKRRMEEIAEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDD 1461



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 40/97 (41%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I++  A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEKIVETAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|325686582|gb|EGD28608.1| DNA polymerase III PolC [Streptococcus sanguinis SK72]
          Length = 1462

 Score =  187 bits (475), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 134/955 (14%), Positives = 287/955 (30%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-------- 193
            EGLI+ +  S G +  A        A +    +        ++ +     Y+        
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYEPLISKEQI 710

Query: 194  ------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT +  ++  E+    ++         ++      
Sbjct: 711  KDQEELQTIIRNLIEVGDRLGKPVLATGDVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 770

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
              + +  P         N       F     A +  +    + +   +    +       
Sbjct: 771  GENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQLAETFEPVEVVKGDLYTP 830

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 831  FIDKAEETVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 880

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 881  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSY 939

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 940  GSGFDMPDKDCPKCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 999

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1000 FGSEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1038

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1039 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1085

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1086 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNDIPMDDAGVMALF 1139

Query: 613  TTKGTLGIFQ--LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+ Q  + +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1140 SGTDILGVTQEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1196

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  +  G     A  +   + K +  ++ +++ 
Sbjct: 1197 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGLDPKMAFTIMERVRKGLWLKISEEER 1256

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1257 NGYIAAMKENNVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1312

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1313 YFSIRAKAFDIKTMSGGLDAVKRRMNEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFK 1372

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +    +A+ G+G   AR ++ A  +  F S  +   R   
Sbjct: 1373 FGKLDLYKSHATEFLIEGDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR--- 1429

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1430 GGLSSTLVEK------MDDMGI-----LGNMPE-------------DNQLSLFDE 1460



 Score = 91.8 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  AGIQ I 
Sbjct: 338 VEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKSAKKAGIQLIY 397

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I       + N+          +V 
Sbjct: 398 GMEANIVEDRVPIVYNEVDMALGDATYVVF 427


>gi|260589219|ref|ZP_05855132.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
 gi|260540300|gb|EEX20869.1| DNA polymerase III, alpha subunit [Blautia hansenii DSM 20583]
          Length = 1487

 Score =  187 bits (475), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 148/919 (16%), Positives = 289/919 (31%), Gaps = 183/919 (19%)

Query: 56   LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
            ++F +      I        ++D  +     +            ++L     G   L  L
Sbjct: 619  VKFIEMCVERDI-------FNLDELNEKGTVSVHSIQKMPTYHAIILAKNDVGRVNLYHL 671

Query: 116  VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
            +S  +L+    +  RI  S   +   EGL++ +   +G + +A      +    RL+ F 
Sbjct: 672  ISDSHLI-YYHRRPRIPKSLFLKY-QEGLLIGSACEAGELYQAVLNGRPEQEIARLVNFY 729

Query: 176  KLFGDRLYVNLQRHR-----------------GYDRYRESQVVQLAYTHELPLVATNNSL 218
                   Y+ +Q                       +    ++V+L      P+V T +  
Sbjct: 730  D------YLEIQPLGNNAFMLKNEDRSDITSWEDLQEINKKIVKLGEAFNKPVVGTCDVH 783

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            FL  ED     ++MA                 D           +  +         E  
Sbjct: 784  FLDPEDEVYRRIIMA---------GKGFDDADDQAPLYLRTTEEMLKEFSYLGREKAEEI 834

Query: 279  RRC-SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDY 337
                   +      +    + +C  + +  +  LR    +       +         +  
Sbjct: 835  VITNPNKIADMVEKISPIHKGKCPPVIENSDAMLREICYSKAHEIYGENL------PEMV 888

Query: 338  RQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDP 397
              RL+ ELN I    ++  ++I    +  +  +   VG  RGS   S  A    IT+++P
Sbjct: 889  EARLERELNSIISNGYAVMYMIAQKLVWKSNSDGYLVG-SRGSVGSSFAATMSGITEVNP 947

Query: 398  LR---------------------------------------------FSLLFERFLNPDR 412
            L                                              F + FE FL    
Sbjct: 948  LSPHYYCAKCHYADFDSEEVRAYSGRAGCDMPDKKCPVCGEPLVKEGFDIPFETFLGFKG 1007

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
               PD D++F  D + +  RYV+  +G  +  +  T G+L  K A   V    +      
Sbjct: 1008 DKEPDIDLNFSGDYQGKAHRYVEVIFGAGQTFKAGTIGTLAEKTAFGYVKNYYE------ 1061

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
                                         R        +  I Q   G+ R    H  GI
Sbjct: 1062 ----------------------------ERGQRKRYCEINRIVQGCTGVRRTTGQHPGGI 1093

Query: 533  VIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            ++      + +  P+     D+ SD+  T F+   I+   L+K D LG    T+++    
Sbjct: 1094 IVLPIGWDIEEFTPVQHPANDMNSDIITTHFDYHSIDS-NLLKLDILGHDDPTMIR---- 1148

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
             + +    ++   IP D  E   L      LGI   +  G      G+     +  + ++
Sbjct: 1149 -MLEDLTGINAREIPLDSKEVMSLFKNTDALGITPDDIRGCPLGCLGIPEFGTDFAMQML 1207

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
                P    ++V  +   +G +  +     +      T    I     + I  +  G   
Sbjct: 1208 IDANPTSFSDLVRISGLSHGTDVWLGNAQDLIKSGTATITTCICTRDDIMIYLINKGLEH 1267

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             +A  +  ++ K    + +     +I    K+ +      +  ++      Y F K+HAA
Sbjct: 1268 GQAFTIMESVRKGKGLKPE-----WIEEMKKHDVPDWYIESCKKI-----KYMFPKAHAA 1317

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLE-------------------------------- 795
            AY ++ ++ A+ K  +P+ + AA  ++                                 
Sbjct: 1318 AYVMMGWRIAYCKIFHPLAYYAAYFSIRATAFSYELMCQGKEKLEYFMDDYEKRKDTLSK 1377

Query: 796  -MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHI 853
               +  K  +  Q+        +P  +       F++ D ++  +L  I+G+G   A  +
Sbjct: 1378 KEQDTYKDMRIVQEMYARGFDFVPIDIYKANAHTFQIIDGKLMPALDTIEGLGDRAADAV 1437

Query: 854  MEASADKPFDSLEDFCSRV 872
            + A+ +  F SL+DF +R 
Sbjct: 1438 VAAAEEGNFLSLDDFRNRT 1456



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 10/95 (10%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-------- 63
           V L  H+  S ++G      ++ +       AIAITD   + +  E              
Sbjct: 370 VELHCHTKMSDMDGVSDAKALIKRAYEWGHKAIAITDHGVVQAFPEA-NHCFDSWGGVVP 428

Query: 64  -AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
             A  + I G +  +       + N          
Sbjct: 429 PEADFKVIYGVEAYLVDDLKGIVQNSKGQSLHAPY 463


>gi|282600891|ref|ZP_06257782.1| DNA polymerase III, alpha subunit [Subdoligranulum variabile DSM
            15176]
 gi|282571272|gb|EFB76807.1| DNA polymerase III, alpha subunit [Subdoligranulum variabile DSM
            15176]
          Length = 1347

 Score =  187 bits (475), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 144/914 (15%), Positives = 278/914 (30%), Gaps = 204/914 (22%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                +++LV    G + L  +VS  +      +  R+  S L +   EGL++     +G 
Sbjct: 512  KYYHLIILVQNQVGLKNLYRIVSAAHTQ-YFFKKPRVPRSLLNKY-REGLLLSPACEAGE 569

Query: 155  IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQV 200
            + RA           R+  +        Y+ +Q     +              +     V
Sbjct: 570  LYRAIVAGQPYEQLLRIADYYD------YLEVQPLGNNEFMVRNGQVDSIEAIKNFNRTV 623

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
            ++L      P+VAT +S F   ED+  +  ++   +    +    P              
Sbjct: 624  IKLGEDLHKPVVATGDSHFQEPEDWI-YRAVLQAGNGFKDADNQAPLYYHTTTEMLEDFS 682

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
                    +A E  V    + +  +  +   +P+             E ELR+       
Sbjct: 683  YLPQ---DKAFEIVVTNPNKIAATIDNNLRAIPKGTYP---PSIPGAEQELRDDTWKHAA 736

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                             ++RL  EL+ I    ++  ++I    + ++      VG  RGS
Sbjct: 737  RDYGTPL------PDVLQKRLKKELDSICGHGYAVLYVIAVRLVAYSNAGGYQVG-SRGS 789

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S  A+   I++++ +                                          
Sbjct: 790  VGSSAVAHFSGISEVNSMPPHYLCPECKHSEWIDDGIHMDGFDLPDKNCPVCGHKMIVEG 849

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + FE FL       PD D++F    +  V RY +  +G E V +  T   LQ K A  
Sbjct: 850  HDIPFETFLGFYGDKEPDIDLNFSGMYQSHVHRYTEELFGKENVFKAGTVSGLQDKTAYG 909

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             V +                  +    V+    A+++R                      
Sbjct: 910  YVKK---------------YLEERGKTVNR---AEENRL----------------VIGCT 935

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H  G+V+      +     +          L  T F  K++    L+K D L
Sbjct: 936  GVKRTTGQHPGGMVVVPDTFDIYDFCAIQHPADDVKGGLLTTHFEFKYLHDT-LLKLDEL 994

Query: 575  GLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGI 620
            G    T  +       +    + +  +P +D + Y LLT+                T GI
Sbjct: 995  GHDVPTFYKYF-----EEYSGIPIDSVPMNDEKVYSLLTSPEALGVTEEQIGSKTGTFGI 1049

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             ++ ++ +RQ L   QP    ++I +  L          V+ N              +  
Sbjct: 1050 PEMGTNFVRQMLLDAQPKNFSELIQISGLSH-----GTDVWTNNA----------DELIR 1094

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
                T   +I     + +  L  G     A  +  A+ K  K      +  +     ++ 
Sbjct: 1095 SGTCTIAEVIGCRDSIMLYLLRKGLEPKMAFDIMEAVRKG-KVAKGGFQPGWEEAMREHD 1153

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
            +      +  ++      Y F K+HA AY + + +  W K ++P  F A   T+   +++
Sbjct: 1154 VPDWYIESCRKI-----KYMFPKAHAVAYLMAAIRLMWFKVYHPAIFYAVYFTVRGADID 1208

Query: 801  K----------------------------------IKKFCQDARQFNIQIMPPSV-NTPC 825
                                                 +   +  Q   Q +P  +  +  
Sbjct: 1209 YEAAVGGVRVAKEHLRDNERIPKEERTAKDDDALVSLQLENEMLQRGCQFLPIELGKSHA 1268

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARH-----IMEASADKPFDSLEDFCSRVDSKKLNRR 880
              + V D ++     +++G+G   A       I      + + S+E+      +  +   
Sbjct: 1269 SKYVVEDGKVRLPFTSLRGLGEAAAVALEEATI----HGQEYISIEELQQ---ASGVASS 1321

Query: 881  VLESLVFAGALDCF 894
            V + L   GAL   
Sbjct: 1322 VFDKLRSVGALGNL 1335



 Score = 69.8 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 5/91 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK---ACAA--G 66
           V L +H+  S ++G      I+         AIAITD        E              
Sbjct: 231 VELHLHTKSSSMDGFNDPGKIVRLAHRMGHRAIAITDHGVCQGYPEAMLATDDIHKNDPN 290

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
            + I GC+          +  + + P     
Sbjct: 291 FKLIYGCEAYFVDDMIPAVYGKAQMPLSGSF 321



 Score = 43.2 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 49/137 (35%), Gaps = 11/137 (8%)

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFEN---- 954
              +L+S++  +  A+ +++   +      A      +++   +    +   V+FE     
Sbjct: 37   RTILESVELPRVLAELIQERTGSLPIVRLADTGNARTEEEFEQYLQEKTPVVKFEAKETP 96

Query: 955  -EQRVLGFYFSGHPLD-VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKG 1012
             +  + G   S  P+   Y    +    +   +      G  + +   V + + K +R+ 
Sbjct: 97   PDFTIEGLSLSNKPVKVFYGKNFKPAETRRLNDLG---DGGKVVVWGDVFATEVKGSRR- 152

Query: 1013 SRIGWVTFSEPAKEYEA 1029
             +I + + ++       
Sbjct: 153  -KIYFTSITDYTGSVNL 168


>gi|331265607|ref|YP_004325237.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5]
 gi|326682279|emb|CBY99896.1| DNA polymerase III, alpha subunit [Streptococcus oralis Uo5]
          Length = 1463

 Score =  187 bits (474), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 134/955 (14%), Positives = 285/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +  A        A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEDLARKLVIENPNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPNKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K  D        +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRKLQDLSR-----IDPNEIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLDAIKRRMEEIAEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSDATEFLIDGDTLIPPFVAMDGLGENVAKQLVRARQEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LSNMPE-------------DNQLSLFDD 1461



 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVAIAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|169833032|ref|YP_001693801.1| DNA polymerase III PolC [Streptococcus pneumoniae Hungary19A-6]
 gi|168995534|gb|ACA36146.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae Hungary19A-6]
          Length = 1463

 Score =  187 bits (474), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 285/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  + G +  A        A +    +        ++ +               
Sbjct: 659  EGLILGSACAEGEVFDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALADIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPNKDCPKCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNEIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLDAIKHRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 38/97 (39%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+         A+AITD  N+ S     + A  
Sbjct: 332 MPEGDRRVEFHAHTNMSTMDALPEVEEIVATATKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVERDLSEATYVVF 428


>gi|313899185|ref|ZP_07832705.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            sp. HGF2]
 gi|312956008|gb|EFR37656.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridium
            sp. HGF2]
          Length = 1448

 Score =  187 bits (474), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 134/911 (14%), Positives = 270/911 (29%), Gaps = 190/911 (20%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGK---------QSVRICLSWLQEIG-TEGLIML 147
             + +L     G + L ELV+  +                  RI  S +++      L++ 
Sbjct: 588  HVTILAKNMAGLKELFELVTLSHTSYLAYSSKSTNNIVAEPRILRSEIEKRRINGNLLIG 647

Query: 148  TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RHRGYDR-------- 194
            +   +G +       + Q  E+ +  +        Y+ LQ     RH             
Sbjct: 648  SSCLNGEVFDMAQTRNEQTLEEVMQFYD-------YIELQPLENYRHLVERDSISSMERL 700

Query: 195  -YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRPRVTPDH 252
                + +V+ A   +  LVA+ +  ++   +    D+ ++      V             
Sbjct: 701  KEILTCIVKAADKLDKLLVASGDCHYVQPGEKMIRDIYISSQAIGGVRHPLYIYNQEKRR 760

Query: 253  YLKNRSEMVSIFSDL---------PEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
              K   +      ++           A +  ++  +R + ++    P+  R    + +  
Sbjct: 761  KFKAPDQHFRTTKEMLKEFAWLGEQRAYDMVIKNTKRIADMIGEVKPVKDRLYPPDIEG- 819

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
                + +L +        +            +   +RL+ EL  I    F   + I    
Sbjct: 820  ---SDQKLTDICYENAHKKYGP------VLPEIVEKRLEKELASIIGHGFYVVYYISHLL 870

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------ 399
            ++ +  +   VG  RGS   S  A    IT+++PL                         
Sbjct: 871  VKKSLNDGYLVG-SRGSVGSSFVATMSEITEVNPLAPHYVCPKCHYVKFYTDGSVADGFD 929

Query: 400  -----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
                               + FE FL  +   +PD D++F  D +     Y +  +G + 
Sbjct: 930  LPDIICPNCGETIRGDGHDIPFETFLGFEGDKVPDIDLNFSGDYQPNAHAYTKEVFGDDH 989

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            V +  T G++  + A   V               K    +     S++            
Sbjct: 990  VYRAGTIGTVATQTAFGYV---------------KGYEEEMGIEGSMRN----------- 1023

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMY---RDVRSDLPVTQ 557
                   ++L +++  EG+ R    H  GI++    L      P+     +  ++   T 
Sbjct: 1024 ------AQVLHLAKGCEGVKRTTGQHPGGIIVIPLDLDVHDFTPVQYPANNPYAEWKTTH 1077

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGT 617
            F    I    ++KFD LG    T ++              + +   +    +  +     
Sbjct: 1078 FEFHDIHD-NVLKFDILGHVDPTAMKMLERMSG--IDPTTIPMNDPETMSVFSKVDALKI 1134

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
                  E +G     E   P     +     L RP   D ++  +   +G +  +     
Sbjct: 1135 DTSKSCEETGAAGLPEFGTPFVRGIL----ELTRPTTFDELLKISGLSHGTDVWLGNAKD 1190

Query: 678  IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            +      T   +I     + +  L  G     A  +  ++ K    + +     +I    
Sbjct: 1191 LIDNGTCTLKSVIGCRDDIMVYLLHKGLRPKLAFTIMESVRKGKGLKDE-----WIPEMK 1245

Query: 738  KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
             NG+      +  ++      Y F K+HA AY +++ + AW K H P  +     ++  D
Sbjct: 1246 ANGVEDWYIDSCLKI-----KYMFPKAHATAYVMMAIRIAWFKVHRPQVYYCMFFSIRCD 1300

Query: 798  NVEKIKKFCQDARQFNIQI---------------------------MPPSVNTPCVDFKV 830
              +       +                                   +   +N     F  
Sbjct: 1301 AYDIETMIKGEQAIRRRMQEISDMLKNNETKKDVSKKDKDTFNTLELALEMNLRGYYFTN 1360

Query: 831  GD----------------NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
             D                N I     +I G+G   A  ++EA     F S ED   R   
Sbjct: 1361 IDIMRSASREFIVDPENANYIIPPFTSIDGLGENVADTVVEARRQGAFLSKEDLQRRTAL 1420

Query: 875  KKLNRRVLESL 885
                 + +ES+
Sbjct: 1421 SGTLVKKMESM 1431



 Score = 68.7 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 7/95 (7%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA------LEFSQKACAA 65
           V L VH+  S ++G  ++   +D+  A    AIAITD   + +       +E   K    
Sbjct: 306 VELHVHTKLSEMDGVCNIEEYIDQANAWGMDAIAITDHLVVQAFPKAQHKVEAINKGRET 365

Query: 66  GIQPIIGCQLD-IDMQDNLKMTNQGKTPFPTVPSI 99
             + I G +++ +D    +    Q          +
Sbjct: 366 PFKMIYGLEMNMVDPALQIVRNIQDIELEKGTYCV 400


>gi|312868001|ref|ZP_07728205.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            parasanguinis F0405]
 gi|311096405|gb|EFQ54645.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            parasanguinis F0405]
          Length = 1464

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 283/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + ++       V    L V    G + + +LVS        +   RI  + L +   
Sbjct: 602  NIDLIDENSYKKARVKHATLYVKNQTGLKNMFKLVSLSGTK-YFEGVPRIPKTVL-DAHR 659

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +  A        A +    +        ++ +               
Sbjct: 660  EGLILGSACSEGEVFDAVMSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 712

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  +L  ED    ++         ++      
Sbjct: 713  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYLEPEDEIYREIIVRSLGQGAMINRTIGH 772

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     +   +    +       
Sbjct: 773  GEDAQPAPLPKAHFRTTNEMLDEFAFLGEDLARKIVIENTNALAETFEPVEVVKGDLYTP 832

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        +A            I           R++ EL  I    F+  +L
Sbjct: 833  FIDKAEETVAELTYKRAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 882

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +  + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 883  ASQMLVHRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCSQCQYSEFITDGSY 941

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 942  GSGFDMPDKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1001

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  + +  R  +                    
Sbjct: 1002 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDFGKYYRDAE-------------------- 1040

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++    G+ R    H  GIV       +    P+         +
Sbjct: 1041 -------------VERLALGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1087

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1088 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNDIPMDDPGVMALF 1141

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1142 SGTEVLGVTAEQIGTPTGMLGIPEFGTNFVRGMVEET---HPTTFAELLQLSGLSHGTDV 1198

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1199 WLGNAQDLIKAGIADLSTVIGCRDDIMVYLMHAGLKPKMAFTIMERVRKGMWLKISEEER 1258

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1259 NGYIQAMKENNVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPLYYYCA 1314

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1315 YFSIRAKAFDIKTMGAGLEAVKSRMKEIAEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1374

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ I+ A  +  F S  +   R   
Sbjct: 1375 FGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQIVRAREEGEFLSKTELRKR--- 1431

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              ++  ++E       +D  G      L ++               +   ++F  
Sbjct: 1432 GGVSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDD 1462



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 38/97 (39%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  ++ K A     A+AITD  N+ S     + A  
Sbjct: 333 MPEGERRVEFHAHTNMSTMDALPEVEELIAKAAEWGHKAVAITDHGNVQSFPHGFKAAKK 392

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I         N+          +V 
Sbjct: 393 AGIQLIYGMEANIVEDKVPITYNEVDLDLNEATYVVF 429


>gi|307705682|ref|ZP_07642529.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            mitis SK597]
 gi|307620762|gb|EFN99851.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            mitis SK597]
          Length = 1463

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 137/980 (13%), Positives = 295/980 (30%), Gaps = 210/980 (21%)

Query: 58   FSQK-ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F ++ A   G+       +D+  + N+ + +        +    + V    G + + +LV
Sbjct: 584  FIKEVAEKHGV-------IDLA-RLNIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLV 635

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
            S        +   RI  + L +   EGLI+ +  + G +  A        A +    +  
Sbjct: 636  SLSNTK-YFEGVPRIPRTVL-DAHREGLILGSACAEGEVFDAVVSQGVDAAVEVAKYYD- 692

Query: 177  LFGDRLYVNLQR--------------HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
                  ++ +                     +     ++++      P++AT N  ++  
Sbjct: 693  ------FIEVMPPAIYAPLIAKEQIKDTEELQTIIKSLIEVGDRLGKPVLATGNVHYIEP 746

Query: 223  EDYEAHDV---------LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALEN 273
            E+    ++         ++          +  P         N       F     A + 
Sbjct: 747  EEEIYREIIVRSLGQGAMINRTIGHGEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKL 806

Query: 274  TVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYH 333
             +E     + I +    +         D  ++        KA            I     
Sbjct: 807  VIENPNALADIFEPVEVVKGDLYTPFIDKAEETVAELTYKKAFE----------IYGNPL 856

Query: 334  AQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTIT 393
                  R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT
Sbjct: 857  PDIVDLRIEKELTSILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGIT 915

Query: 394  DIDPLR-----------------------------------------FSLLFERFLNPDR 412
            +++PL                                            + FE FL  D 
Sbjct: 916  EVNPLSPHYVCGQCQYSEFITDGSYGSGFDMPNKDCPNCGHKLSKNGQDIPFETFLGFDG 975

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
              +PD D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y + 
Sbjct: 976  DKVPDIDLNFSGEDQASAHLDVRDIFGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKF 1034

Query: 473  DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
             R  +                                 +  ++Q   G+ R    H  GI
Sbjct: 1035 YRDAE---------------------------------VERLAQGAAGVKRTTGQHPGGI 1061

Query: 533  V--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            V       +    P+         +   T FN   I++  ++K D LG    T+++K   
Sbjct: 1062 VVIPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK--- 1117

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIA 645
               Q    +D + IP DD     L +    LG+   Q+ +      +     + +  ++ 
Sbjct: 1118 --LQDLSGIDPNEIPMDDEGVMALFSGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVD 1175

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
                  P     ++  +   +G +  +     +          +I     + +  + +G 
Sbjct: 1176 ET---HPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGL 1232

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
                A  +   + K +  ++ +++      A K        +     +     Y F K+H
Sbjct: 1233 EPKMAFTIMERVRKGLWLKISEEERNGYIEAMKANKVPEWYIESCGKI----KYMFPKAH 1288

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------- 804
            AAAY +++ + A+ K H+P+ +  A  ++     +                         
Sbjct: 1289 AAAYVMMALRVAYFKVHHPIYYYCAYFSIRAKAFDIKTMGAGLDAIKRRMEEIAEKRKNN 1348

Query: 805  --------------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTT 849
                             +  +   +     +      +F +  + +     A+ G+G   
Sbjct: 1349 EASNVEIDLYTTLEIVNEMWERGFKFGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENV 1408

Query: 850  ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
            A+ ++ A  +  F S  +   R     L+  ++E       +D  G      L ++    
Sbjct: 1409 AKQLVRAREEGEFLSKTELRKR---GGLSSTLVEK------MDEMGI-----LGNMPE-- 1452

Query: 910  KYAQWVEKNRTNKHENIFAH 929
                       +   ++F  
Sbjct: 1453 -----------DNQLSLFDE 1461



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|322390849|ref|ZP_08064359.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903]
 gi|321142519|gb|EFX37987.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 903]
          Length = 1464

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 283/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + ++       V    L V    G + + +LVS        +   RI  + L +   
Sbjct: 602  NIDLIDENSYKKARVKHATLYVKNQTGLKNMFKLVSLSGTK-YFEGVPRIPKTVL-DAHR 659

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +  A        A +    +        ++ +               
Sbjct: 660  EGLILGSACSEGEVFDAVMSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 712

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  +L  ED    ++         ++      
Sbjct: 713  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYLEPEDEIYREIIVRSLGQGAMINRTIGH 772

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     +   +    +       
Sbjct: 773  GEDAQPAPLPKAHFRTTNEMLDEFAFLGEDLARKIVIENTNALAETFEPVEVVKGDLYTP 832

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        +A            I           R++ EL  I    F+  +L
Sbjct: 833  FIDKAEETVAELTYKRAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 882

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +  + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 883  ASQMLVHRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCSQCQYSEFITDGSY 941

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 942  GSGFDMPDKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1001

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  + +  R  +                    
Sbjct: 1002 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDFGKYYRDAE-------------------- 1040

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++    G+ R    H  GIV       +    P+         +
Sbjct: 1041 -------------VERLALGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1087

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1088 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNDIPMDDPGVMALF 1141

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1142 SGTEVLGVTAEQIGTPTGMLGIPEFGTNFVRGMVEET---HPTTFAELLQLSGLSHGTDV 1198

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1199 WLGNAQDLIKAGIADLSTVIGCRDDIMVYLMHAGLKPKMAFTIMERVRKGMWLKISEEER 1258

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1259 NGYIQAMKENNVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPLYYYCA 1314

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1315 YFSIRAKAFDIKTMGAGLEAVKARMKEIAEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1374

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ I+ A  +  F S  +   R   
Sbjct: 1375 FGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQIVRAREEGEFLSKTELRKR--- 1431

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              ++  ++E       +D  G      L ++               +   ++F  
Sbjct: 1432 GGVSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDD 1462



 Score = 94.9 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 38/97 (39%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  ++ K A     A+AITD  N+ S     + A  
Sbjct: 333 MPEGERRVEFHAHTNMSTMDALPEVEELIAKAAEWGHKAVAITDHGNVQSFPHGFKAAKK 392

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I         N+          +V 
Sbjct: 393 AGIQLIYGMEANIVEDKVPITYNEVDLDLNEATYVVF 429


>gi|319745868|gb|EFV98158.1| DNA polymerase III PolC [Streptococcus agalactiae ATCC 13813]
          Length = 1468

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 141/975 (14%), Positives = 289/975 (29%), Gaps = 200/975 (20%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +   M+ N K+  +       +    + V    G + + +LVS
Sbjct: 589  FLKEARENR-------DVTNLMELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVS 641

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +    +   RI  S L +   EGL++ T  S G +  A   N    A      +   
Sbjct: 642  LSNVK-YFEGVARIPRSVL-DAHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYD-- 697

Query: 178  FGDRLYVNLQ----------RHRGYDR----YRESQVVQLAYTHELPLVATNNSLFLSEE 223
                 ++ +           R    D          ++++    + P++AT N  ++  E
Sbjct: 698  -----FIEVMPPAIYRPLVVRDLIKDEAGIQQIIRDLIEVGRRLDKPVLATGNVHYIEPE 752

Query: 224  DYEAHDVLM-----AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            D    ++++         +  + + +  +  P      R+    +        +   EI 
Sbjct: 753  DEIYREIIVRSLGQGAMINRTIGRGEDAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYEIV 812

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
               +         +               E  +     A                     
Sbjct: 813  VTNTNTFADRFEDVEVVKGDLYTPFVDRAEERVAELTYAKAFEIYGNPL------PDIID 866

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++P+
Sbjct: 867  LRIEKELASILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPM 925

Query: 399  R-----------------------------------------FSLLFERFLNPDRMSMPD 417
                                                        + FE FL  D   +PD
Sbjct: 926  PPHYVCPNCQHSEFITDGSCGSGYDLPNKNCPKCGTLYKKDGQDIPFETFLGFDGDKVPD 985

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  D +      V++ +G E   +  T G++  K A   V                
Sbjct: 986  IDLNFSGDDQPSAHLDVRDIFGEEYAFRAGTVGTVAEKTAFGFVK--------------- 1030

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IG 535
                   +        +D+                  +    G+ R    H  GIV    
Sbjct: 1031 ------GYERDYNKFYNDAEVERL-------------ATGAAGVKRSTGQHPGGIVVIPN 1071

Query: 536  DRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
               +    P+             T FN   I++  ++K D LG    T+++K      Q 
Sbjct: 1072 YMDVYDFTPVQYPADDMTAAWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQD 1125

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLY 650
               +D S I  DD +   L +    LG+   Q+ +      +     + +  ++      
Sbjct: 1126 LSGIDPSNILPDDPDVMKLFSGTEVLGVTEEQIGTPTGMLGIPEFGTNFVRGMVNET--- 1182

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             P     ++  +   +G +  +     +      T   +I     + +  + +G     A
Sbjct: 1183 HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLSTVIGCRDDIMVYLMHAGLQPKMA 1242

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
              +   + K +  ++ + +      A ++       +     +     Y F K+HAAAY 
Sbjct: 1243 FTIMERVRKGLWLKISEDERNGYIQAMRDNNVPDWYIESCGKI----KYMFPKAHAAAYV 1298

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK-------------------------- 804
            +++ + A+ K HYP+ +  A  ++     E                              
Sbjct: 1299 LMALRVAYFKVHYPIFYYCAYFSIRAKAFELRTMSAGLDAVKARMKDITEKRQRNEATNV 1358

Query: 805  ---------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIM 854
                        +  +   +     +      DF + ++ +     A++G+G   A+ I+
Sbjct: 1359 ENDLFTTLELVNEMLERGFKFGKLDLYRSHATDFIIEEDTLIPPFVAMEGLGENVAKQIV 1418

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
             A  D  F S  +   R     ++  ++E        D  G      L +L         
Sbjct: 1419 RAREDGEFLSKTELRKR---GGVSSTLVEK------FDEMGI-----LGNLPE------- 1457

Query: 915  VEKNRTNKHENIFAH 929
                  +   ++F  
Sbjct: 1458 ------DNQLSLFDD 1466



 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++ +++D  A    PAIAITD  N+ S      +A  AGI+ I 
Sbjct: 344 VEFHAHTNMSTMDALPTVESLIDTAAKWGHPAIAITDHANVQSFPHGYHRAKKAGIKAIF 403

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 404 GLEANIVEDKVPISYNEVDMNLHEATYVVF 433


>gi|320528407|ref|ZP_08029569.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204]
 gi|320131321|gb|EFW23889.1| DNA polymerase III, alpha subunit [Solobacterium moorei F0204]
          Length = 1449

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 143/937 (15%), Positives = 282/937 (30%), Gaps = 218/937 (23%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLD---QGKQ----------SVRICLSWLQEIGT 141
                +  +    +G   L +LV+          GK             R+  S L++   
Sbjct: 585  RRSHVCAIAKNHDGLVALYKLVTESNTNTLAVNGKATGKEGTDVAAEPRVVRSTLEKY-R 643

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-------- 193
            E L++ +   +G +            E+ +  +        Y+ LQ    Y         
Sbjct: 644  ENLLLGSACLNGEVFELACNGDDARLEEAMKLYD-------YIELQPLGNYSTSIVLGSI 696

Query: 194  ------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-STVVSQKDRP 246
                  +  + +++++A    +P+ AT+++ +   E     DV +        +      
Sbjct: 697  PSVDRLKEVQKRILRMAQKLNIPVCATSDAHYCIPEQKIFRDVYIMSQGVGGTIHPLYIR 756

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEAL------ENTVEIARRCSFILQVHAPILPRFIEKEC 300
                    KN  + + +  ++ +        +   EI  R    +      +        
Sbjct: 757  DEVLRLRTKNPDQHIRLTDEMKKEFAWLDDPDLIEEIVVRNPNSIFDLIEEVRPVPAGTY 816

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              + +  +++LR                  G   +    RL+ EL+ I R  F  ++ I 
Sbjct: 817  PPVIEGSDDKLRKICHDTAMRMYGFE----GKVPEIVTDRLNSELDNIIRNGFGVHYYIA 872

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ +  +   VG  RGS   S TA    IT+++PLR                     
Sbjct: 873  HLLVKKSNDDGYVVG-SRGSVGSSFTATMSGITEVNPLRPHYLCPKCHYSEFFDDPSIAS 931

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                 ++ F+ FL  +    PD D++F  + +     ++++ +G
Sbjct: 932  GFDLPDKVCPHCGETMRGNGHNIPFQTFLGFNADKTPDIDLNFSNEYQWRAHAFIKDVFG 991

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
             +   +  T G++  K A   V           +++       P                
Sbjct: 992  EDHAFRAGTIGTVAEKTAFGYV-------QGYCEKMKISNMRRPMKD------------- 1031

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMY---RDVRSDLP 554
                          ++   + + R    H  GI+I           P+     D  S   
Sbjct: 1032 -------------YLAHGCQNVKRTTGQHPGGIIIIPHEYEAEDFTPVQYPANDPTSAWK 1078

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT 614
             T ++   I    ++KFD LG    T ++     L Q+   V    IP +D ET  L + 
Sbjct: 1079 TTHYDFHDIHD-NVLKFDILGHVDPTAMR-----LLQKIATVKPLDIPMNDIETLSLFSC 1132

Query: 615  KGTLG--------------IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
               L               + +  +   R  LE  +P    D++ +  L          V
Sbjct: 1133 DDALKADTRIYKKETGALGLPEFGTRTTRGVLEETRPKKFSDLVIISGLSH-----GTDV 1187

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +                +         VI  ++ +M            +A  +  ++ K 
Sbjct: 1188 WAGNAQ----------ELIRQGHTIDEVIGCRDDIMTYLLDH-NLESLDAFKIMESVRKG 1236

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
                     E +     ++ + +    +  ++      Y F K+HA AY +++ + AW K
Sbjct: 1237 K-----GLTEAWEKSMIEHQVPEWYIESCKKI-----KYMFPKAHAVAYVMMAMRIAWYK 1286

Query: 781  THYPVEFLAASMTLEMDNVE---------------------------------------K 801
             H P+ F    +TL  D  E                                        
Sbjct: 1287 VHEPLNFYIQYLTLRCDTYEIETMAKGIDVIRTRMNDISTRIAERNPENPVSNKEKSLFD 1346

Query: 802  IKKFCQDARQFNIQIMPPSVNTP-CVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEAS 857
            + + C++       I    +      +F++       I      I G+G   A+ I EA 
Sbjct: 1347 VLEVCEELYARGYNISNVDLYKSLATEFRMSPDNPKTIIPPFTVIDGLGVNVAKSIEEAR 1406

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
                F S ED   R    +++  +L  L   G L+  
Sbjct: 1407 EKGEFLSKEDILKRT---QVSSSMLVKLAHMGCLEGL 1440



 Score = 61.7 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 15/99 (15%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA------- 64
           V L +HS+ S ++G   + +I+  +       IAITD  ++ S ++    A +       
Sbjct: 301 VELHMHSNLSEMDGVCDIKDIITYVYNLGHRGIAITDHADVQSLVKAYNTAQSLKKKDPD 360

Query: 65  ----AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
                G+    GC+ ++   +   + N        V  I
Sbjct: 361 REFRVGL----GCEFNLANDELTIVRNATDENLDDVTYI 395


>gi|255030455|ref|ZP_05302406.1| hypothetical protein LmonL_17616 [Listeria monocytogenes LO28]
          Length = 193

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 102/209 (48%), Gaps = 18/209 (8%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +L    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PIIG  + I    
Sbjct: 1   MLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPIIGMTVTI---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 QG         ++L+  +  GY +L+++ S +   ++G     +  SWL+   +
Sbjct: 57  ------QGYLNPINSYELILIAESTAGYHQLLKIASAIQTREEG---PELPQSWLRAYSS 107

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYDRYRESQV 200
           + LI+++ G+ G I+R       + A +      ++FG + +Y++ Q+         +++
Sbjct: 108 D-LIVISPGAKGEIERLLMEEDREGALEVYANLVEIFGKESVYLSAQKENP---RLFAKI 163

Query: 201 VQLAYTHELPLVATNNSLFLSEEDYEAHD 229
              +    +P+VAT N  +L  +D +A +
Sbjct: 164 ETFSSEENVPVVATKNVQYLEPKDAQAKE 192


>gi|329769168|ref|ZP_08260588.1| DNA polymerase III [Gemella sanguinis M325]
 gi|328839387|gb|EGF88965.1| DNA polymerase III [Gemella sanguinis M325]
          Length = 1449

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 140/907 (15%), Positives = 287/907 (31%), Gaps = 193/907 (21%)

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            +LV  A+G + L  +VS             I  S L++   + L++ +G S   +     
Sbjct: 624  ILVKNAKGLKDLFRIVSYSCTDYLSSGKPTIPRSLLEQY-RKDLLIGSGNSENEVFEELL 682

Query: 161  FNSSQVAEKRLLTFKKLFGDRLYVNLQ--RH------------RGYDRYRESQVVQLAYT 206
             +     E  +  +        Y+ +Q   H                     +++ +A  
Sbjct: 683  NSKEDKVEGIIDFYD-------YIEIQPKNHYHSFIRSERITDEAELEELLKKLIDIAKK 735

Query: 207  HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD 266
             +  +VAT +  +L E  +    +L               +                F D
Sbjct: 736  KDKIVVATGDCYYLDEYQHVYRQIL--RLTVKSNPGARDIKPMATFLTTEEMLNEFSFLD 793

Query: 267  LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
                 E  ++   + S ++++  P+  +      +       +E+R+ + +         
Sbjct: 794  EKLREEIVIDNTHKISDLIELVVPLKNKLYTPNIEG----AADEVRDLSYSMAHKIYGD- 848

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                    +   +RL+ EL  I    FS  +LI    ++ +  +   VG  RGS   S+ 
Sbjct: 849  -----KLPEIVEKRLEKELASIIGNGFSVVYLISHKLVKKSLDDGYLVG-SRGSVGSSLV 902

Query: 387  AYALTITDIDPLR-----------------------------------------FSLLFE 405
            A  + IT+++PL                                            + FE
Sbjct: 903  ATMMEITEVNPLAPHYVCPKCKHSEFFLNAEYASGFDLPNKNCPHCDVKMIKDGQDIPFE 962

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
             FL  +   +PD D++F  + +     + +  +G + V +  T  ++  K A        
Sbjct: 963  TFLGFNGDKVPDIDLNFSGEYQATAHNFTKEIFGEDYVYRAGTISTVAEKTAYS-----F 1017

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
               Y + + + K   +                             +  I+   EG  R  
Sbjct: 1018 TRDYYEKNEIEKRSID-----------------------------IERIASGCEGSKRTT 1048

Query: 526  STHAAGI--VIGDRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
              H  GI  V  D  +    P       +      T F+   I    ++KFD LG    T
Sbjct: 1049 GQHPGGILVVPNDMDIFDFTPYQYPADDETSPWRTTHFDFHSIHD-NILKFDILGHDDPT 1107

Query: 581  LLQKSLDFLAQRGVKVDLSLIPFDDHETY-----------HLLTTKGTLGIFQLESSGMR 629
            +++K  D          + +   +    +            + +  GT GI +  ++ + 
Sbjct: 1108 MIRKLQDLSG--IEPKTIDVSDPEVMGIFSTVEALGVTREQVDSASGTFGIPEFGTNFVI 1165

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
            Q L+  +P    +++ +  L                N +E I +    +  ++     ++
Sbjct: 1166 QMLDDTKPTTYSELVQISGLSHG-------TDVWLGNAQELIKNGTCELKDVIGCRDDIM 1218

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +Y         + +G     +  +  ++ K      D     F      N + +    + 
Sbjct: 1219 VYL--------IHAGLEEGLSFKIMESVRKGKGLTED-----FEKAMRDNDVPEWYIDSC 1265

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI------- 802
             ++      Y F K+HA AY +++ + AW K H P+ +  A  ++   + + I       
Sbjct: 1266 KKI-----KYMFPKAHACAYVLMALRIAWFKVHQPLTYYCAYYSVRASDFDIITVVKGEK 1320

Query: 803  ---------------------------KKFCQDARQFNIQIMPPSVNT-PCVDFKVGDNR 834
                                        +   +  +         +      D+ +  N 
Sbjct: 1321 SLKAKIQEIKTKDKNEVTAKDKDALVSYEIANEMLERGFAFSKVDLEKSESHDYIIDGNT 1380

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +    + + G+G   A  I++A  +KPF S+EDF  R     ++  V+E L   G L   
Sbjct: 1381 LIPPFSIVPGLGDNVANKIVQARKEKPFLSIEDFSKR---GSVSSTVVEYLREMGTLKGL 1437

Query: 895  GYSRMQL 901
               + QL
Sbjct: 1438 -PEKAQL 1443



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 8/94 (8%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS-QKA---CAAGI 67
           + L  H+  S LEG  S  + L +  +    AIA TDT   +  ++   +         +
Sbjct: 343 IELNTHTKMSQLEGVSSAKDYLARAESWGHEAIAFTDT---YG-VQAYPEICLSSKGKEL 398

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           +PI G    I        TN+ K        +V 
Sbjct: 399 KPIYGLNAFIMDDSITATTNKKKLRLKDATYVVF 432


>gi|22538049|ref|NP_688900.1| DNA polymerase III PolC [Streptococcus agalactiae 2603V/R]
 gi|25011937|ref|NP_736332.1| DNA polymerase III PolC [Streptococcus agalactiae NEM316]
 gi|76798733|ref|ZP_00780952.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae 18RS21]
 gi|54036993|sp|P63984|DPO3_STRA5 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|54040954|sp|P63983|DPO3_STRA3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|22534952|gb|AAN00773.1|AE014277_21 DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae 2603V/R]
 gi|24413479|emb|CAD47557.1| DNA polymerase III (alpha subunit) [Streptococcus agalactiae NEM316]
 gi|76585912|gb|EAO62451.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae 18RS21]
          Length = 1468

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 141/975 (14%), Positives = 289/975 (29%), Gaps = 200/975 (20%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +   M+ N K+  +       +    + V    G + + +LVS
Sbjct: 589  FLKEARENR-------DVTNLMELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVS 641

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +    +   RI  S L +   EGL++ T  S G +  A   N    A      +   
Sbjct: 642  LSNVK-YFEGVARIPRSVL-DAHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYD-- 697

Query: 178  FGDRLYVNLQ----------RHRGYDR----YRESQVVQLAYTHELPLVATNNSLFLSEE 223
                 ++ +           R    D          ++++    + P++AT N  ++  E
Sbjct: 698  -----FIEVMPPAIYRPLVVRDLIKDEVGIQQIIRDLIEVGRRLDKPVLATGNVHYIEPE 752

Query: 224  DYEAHDVLM-----AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            D    ++++         +  + + +  +  P      R+    +        +   EI 
Sbjct: 753  DEIYREIIVRSLGQGAMINRTIGRGEDAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYEIV 812

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
               +         +               E  +     A                     
Sbjct: 813  VTNTNTFADRFEDVEVVKGDLYTPFVDRAEERVAELTYAKAFEIYGNPL------PDIID 866

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++P+
Sbjct: 867  LRIEKELASILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPM 925

Query: 399  R-----------------------------------------FSLLFERFLNPDRMSMPD 417
                                                        + FE FL  D   +PD
Sbjct: 926  PPHYVCPNCQHSEFITDGSCGSGYDLPNKNCPKCGTLYKKDGQDIPFETFLGFDGDKVPD 985

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  D +      V++ +G E   +  T G++  K A   V                
Sbjct: 986  IDLNFSGDDQPSAHLDVRDIFGEEYAFRAGTVGTVAEKTAFGFVK--------------- 1030

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IG 535
                   +        +D+                  +    G+ R    H  GIV    
Sbjct: 1031 ------GYERDYNKFYNDAEVERL-------------ATGAAGVKRSTGQHPGGIVVIPN 1071

Query: 536  DRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
               +    P+             T FN   I++  ++K D LG    T+++K      Q 
Sbjct: 1072 YMDVYDFTPVQYPADDMTAAWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQD 1125

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLY 650
               +D S I  DD +   L +    LG+   Q+ +      +     + +  ++      
Sbjct: 1126 LSGIDPSNILPDDPDVMKLFSGTEVLGVTEEQIGTPTGMLGIPEFGTNFVRGMVNET--- 1182

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             P     ++  +   +G +  +     +      T   +I     + +  + +G     A
Sbjct: 1183 HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLSTVIGCRDDIMVYLMHAGLQPKMA 1242

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
              +   + K +  ++ + +      A ++       +     +     Y F K+HAAAY 
Sbjct: 1243 FTIMERVRKGLWLKISEDERNGYIQAMRDNNVPDWYIESCGKI----KYMFPKAHAAAYV 1298

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK-------------------------- 804
            +++ + A+ K HYP+ +  A  ++     E                              
Sbjct: 1299 LMALRVAYFKVHYPIFYYCAYFSIRAKAFELRTMSAGLDAVKARMKDITEKRQRNEATNV 1358

Query: 805  ---------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIM 854
                        +  +   +     +      DF + ++ +     A++G+G   A+ I+
Sbjct: 1359 ENDLFTTLELVNEMLERGFKFGKLDLYRSHATDFIIEEDTLIPPFVAMEGLGENVAKQIV 1418

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
             A  D  F S  +   R     ++  ++E        D  G      L +L         
Sbjct: 1419 RAREDGEFLSKTELRKR---GGVSSTLVEK------FDEMGI-----LGNLPE------- 1457

Query: 915  VEKNRTNKHENIFAH 929
                  +   ++F  
Sbjct: 1458 ------DNQLSLFDD 1466



 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++ +++D  A    PAIAITD  N+ S      +A  AGI+ I 
Sbjct: 344 VEFHAHTNMSTMDALPTVESLIDTAAKWGHPAIAITDHANVQSFPHGYHRAKKAGIKAIF 403

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 404 GLEANIVEDKVPISYNEVDMNLHEATYVVF 433


>gi|77409408|ref|ZP_00786106.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae COH1]
 gi|77171990|gb|EAO75161.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae COH1]
          Length = 1468

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 141/975 (14%), Positives = 289/975 (29%), Gaps = 200/975 (20%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +   M+ N K+  +       +    + V    G + + +LVS
Sbjct: 589  FLKEARENR-------DVTNLMELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVS 641

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +    +   RI  S L +   EGL++ T  S G +  A   N    A      +   
Sbjct: 642  LSNVK-YFEGVARIPRSVL-DAHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYD-- 697

Query: 178  FGDRLYVNLQ----------RHRGYDR----YRESQVVQLAYTHELPLVATNNSLFLSEE 223
                 ++ +           R    D          ++++    + P++AT N  ++  E
Sbjct: 698  -----FIEVMPPAIYRPLVVRDLIKDEAGIQQIIRDLIEVGRRLDKPVLATGNVHYIEPE 752

Query: 224  DYEAHDVLM-----AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            D    ++++         +  + + +  +  P      R+    +        +   EI 
Sbjct: 753  DEIYREIIVRSLGQGAMINRTIGRGEDAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYEIV 812

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
               +         +               E  +     A                     
Sbjct: 813  VTNTNTFADRFEDVEVVKGDLYTPFVDRAEERVAELTYAKAFEIYGNPL------PDIID 866

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++P+
Sbjct: 867  LRIEKELASILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPM 925

Query: 399  R-----------------------------------------FSLLFERFLNPDRMSMPD 417
                                                        + FE FL  D   +PD
Sbjct: 926  PPHYVCPNCQHSEFITDGSCGSGYDLPNKNCPKCGTLYKKDGQDIPFETFLGFDGDKVPD 985

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  D +      V++ +G E   +  T G++  K A   V                
Sbjct: 986  IDLNFSGDDQPSAHLDVRDIFGEEYAFRAGTVGTVAEKTAFGFVK--------------- 1030

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IG 535
                   +        +D+                  +    G+ R    H  GIV    
Sbjct: 1031 ------GYERDYNKFYNDAEVERL-------------ATGAAGVKRSTGQHPGGIVVIPN 1071

Query: 536  DRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
               +    P+             T FN   I++  ++K D LG    T+++K      Q 
Sbjct: 1072 YMDVYDFTPVQYPADDMTAAWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQD 1125

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLY 650
               +D S I  DD +   L +    LG+   Q+ +      +     + +  ++      
Sbjct: 1126 LSGIDPSNILPDDPDVMKLFSGTEVLGVTEEQIGTPTGMLGIPEFGTNFVRGMVNET--- 1182

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             P     ++  +   +G +  +     +      T   +I     + +  + +G     A
Sbjct: 1183 HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLSTVIGCRDDIMVYLMHAGLQPKMA 1242

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
              +   + K +  ++ + +      A ++       +     +     Y F K+HAAAY 
Sbjct: 1243 FTIMERVRKGLWLKISEDERNGYIQAMRDNNVPDWYIESCGKI----KYMFPKAHAAAYV 1298

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK-------------------------- 804
            +++ + A+ K HYP+ +  A  ++     E                              
Sbjct: 1299 LMALRVAYFKVHYPIFYYCAYFSIRAKAFELRTMSAGLDAVKARMKDITEKRQRNEATNV 1358

Query: 805  ---------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIM 854
                        +  +   +     +      DF + ++ +     A++G+G   A+ I+
Sbjct: 1359 ENDLFTTLELVNEMLERGFKFGKLDLYRSHATDFIIEEDTLIPPFVAMEGLGENVAKQIV 1418

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
             A  D  F S  +   R     ++  ++E        D  G      L +L         
Sbjct: 1419 RAREDGEFLSKTELRKR---GGVSSTLVEK------FDEMGI-----LGNLPE------- 1457

Query: 915  VEKNRTNKHENIFAH 929
                  +   ++F  
Sbjct: 1458 ------DNQLSLFDD 1466



 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++ +++D  A    PAIAITD  N+ S      +A  AGI+ I 
Sbjct: 344 VEFHAHTNMSTMDALPTVESLIDTAAKWGHPAIAITDHANVQSFPHGYHRAKKAGIKAIF 403

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 404 GLEANIVEDKVPISYNEVDMNLHEATYVVF 433


>gi|77412300|ref|ZP_00788615.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae CJB111]
 gi|77161647|gb|EAO72643.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae CJB111]
          Length = 1468

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 141/975 (14%), Positives = 289/975 (29%), Gaps = 200/975 (20%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +   M+ N K+  +       +    + V    G + + +LVS
Sbjct: 589  FLKEARENR-------DVTNLMELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVS 641

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +    +   RI  S L +   EGL++ T  S G +  A   N    A      +   
Sbjct: 642  LSNVK-YFEGVARIPRSVL-DAHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYD-- 697

Query: 178  FGDRLYVNLQ----------RHRGYDR----YRESQVVQLAYTHELPLVATNNSLFLSEE 223
                 ++ +           R    D          ++++    + P++AT N  ++  E
Sbjct: 698  -----FIEVMPPAIYRPLVVRDLIKDEAGIQQIIRDLIEVGRRLDKPVLATGNVHYIEPE 752

Query: 224  DYEAHDVLM-----AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            D    ++++         +  + + +  +  P      R+    +        +   EI 
Sbjct: 753  DEIYREIIVRSLGQGAMINRTIGRGEDAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYEIV 812

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
               +         +               E  +     A                     
Sbjct: 813  VTNTNTFADRFEDVEVVKGDLYTPFVDRAEERVAELTYAKAFEIYGNPL------PDIID 866

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++P+
Sbjct: 867  LRIEKELASILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPM 925

Query: 399  R-----------------------------------------FSLLFERFLNPDRMSMPD 417
                                                        + FE FL  D   +PD
Sbjct: 926  PPHYVCPNCQHSEFITDGSCGSGYDLPNKNCPKCGTLYKKDGQDIPFETFLGFDGDKVPD 985

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  D +      V++ +G E   +  T G++  K A   V                
Sbjct: 986  IDLNFSGDDQPSAHLDVRDIFGEEYAFRAGTVGTVAEKTAFGFVK--------------- 1030

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IG 535
                   +        +D+                  +    G+ R    H  GIV    
Sbjct: 1031 ------GYERDYNKFYNDAEVERL-------------ATGAAGVKRSTGQHPGGIVVIPN 1071

Query: 536  DRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
               +    P+             T FN   I++  ++K D LG    T+++K      Q 
Sbjct: 1072 YMDVYDFTPVQYPADDMTAAWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQD 1125

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLY 650
               +D S I  DD +   L +    LG+   Q+ +      +     + +  ++      
Sbjct: 1126 LSGIDPSNILPDDPDVMKLFSGTEVLGVTEEQIGTPTGMLGIPEFGTNFVRGMVNET--- 1182

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             P     ++  +   +G +  +     +      T   +I     + +  + +G     A
Sbjct: 1183 HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLSTVIGCRDDIMVYLMHAGLQPKMA 1242

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
              +   + K +  ++ + +      A ++       +     +     Y F K+HAAAY 
Sbjct: 1243 FTIMERVRKGLWLKISEDERNGYIQAMRDNNVPDWYIESCGKI----KYMFPKAHAAAYV 1298

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK-------------------------- 804
            +++ + A+ K HYP+ +  A  ++     E                              
Sbjct: 1299 LMALRVAYFKVHYPIFYYCAYFSIRAKAFELRTMSAGLDAVKARMKDITEKRQRNEATNV 1358

Query: 805  ---------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIM 854
                        +  +   +     +      DF + ++ +     A++G+G   A+ I+
Sbjct: 1359 ENDLFTTLELVNEMLERGFKFGKLDLYRSHATDFIIEEDTLIPPFVAMEGLGENVAKQIV 1418

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
             A  D  F S  +   R     ++  ++E        D  G      L +L         
Sbjct: 1419 RAREDGEFLSKTELRKR---GGVSSTLVEK------FDEMGI-----LGNLPE------- 1457

Query: 915  VEKNRTNKHENIFAH 929
                  +   ++F  
Sbjct: 1458 ------DNQLSLFDD 1466



 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++ +++D  A    PAIAITD  N+ S      +A  AGI+ I 
Sbjct: 344 VEFHAHTNMSTMDALPTVESLIDTAAKWGHPAIAITDHANVQSFPHGYHRAKKAGIKAIF 403

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 404 GLEANIVEDKVPISYNEVDMNLHEATYVVF 433


>gi|77405656|ref|ZP_00782744.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae H36B]
 gi|77175729|gb|EAO78510.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae H36B]
          Length = 1468

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 141/975 (14%), Positives = 289/975 (29%), Gaps = 200/975 (20%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +   M+ N K+  +       +    + V    G + + +LVS
Sbjct: 589  FLKEARENR-------DVTNLMELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVS 641

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +    +   RI  S L +   EGL++ T  S G +  A   N    A      +   
Sbjct: 642  LSNVK-YFEGVARIPRSVL-DAHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYD-- 697

Query: 178  FGDRLYVNLQ----------RHRGYDR----YRESQVVQLAYTHELPLVATNNSLFLSEE 223
                 ++ +           R    D          ++++    + P++AT N  ++  E
Sbjct: 698  -----FIEVMPPAIYRPLVVRDLIKDEAGIQQIIRDLIEVGRRLDKPVLATGNVHYIEPE 752

Query: 224  DYEAHDVLM-----AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            D    ++++         +  + + +  +  P      R+    +        +   EI 
Sbjct: 753  DEIYREIIVRSLGQGAMINRTIGRGEDAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYEIV 812

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
               +         +               E  +     A                     
Sbjct: 813  VTNTNTFADRFEDVEVVKGDLYTPFVDRAEERVAELTYAKAFEIYGNPL------PDIID 866

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++P+
Sbjct: 867  LRIEKELASILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPM 925

Query: 399  R-----------------------------------------FSLLFERFLNPDRMSMPD 417
                                                        + FE FL  D   +PD
Sbjct: 926  PPHYVCPNCQHSEFITDGSCGSGYDLPNKNCPKCGTLYKKDGQDIPFETFLGFDGDKVPD 985

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  D +      V++ +G E   +  T G++  K A   V                
Sbjct: 986  IDLNFSGDDQPSAHLDVRDIFGEEYAFRAGTVGTVAEKTAFGFVK--------------- 1030

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IG 535
                   +        +D+                  +    G+ R    H  GIV    
Sbjct: 1031 ------GYERDYNKFYNDAEVERL-------------ATGAAGVKRSTGQHPGGIVVIPN 1071

Query: 536  DRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
               +    P+             T FN   I++  ++K D LG    T+++K      Q 
Sbjct: 1072 YMDVYDFTPVQYPADDMTAAWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQD 1125

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLY 650
               +D S I  DD +   L +    LG+   Q+ +      +     + +  ++      
Sbjct: 1126 LSGIDPSNILPDDPDVMKLFSGTEVLGVTEEQIGTPTGMLGIPEFGTNFVRGMVNET--- 1182

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             P     ++  +   +G +  +     +      T   +I     + +  + +G     A
Sbjct: 1183 HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLSTVIGCRDDIMVYLMHAGLQPKMA 1242

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
              +   + K +  ++ + +      A ++       +     +     Y F K+HAAAY 
Sbjct: 1243 FTIMERVRKGLWLKISEDERNGYIQAMRDNNVPDWYIESCGKI----KYMFPKAHAAAYV 1298

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK-------------------------- 804
            +++ + A+ K HYP+ +  A  ++     E                              
Sbjct: 1299 LMALRVAYFKVHYPIFYYCAYFSIRAKAFELRTMSAGLDAVKARMKDITEKRQRNEATNV 1358

Query: 805  ---------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIM 854
                        +  +   +     +      DF + ++ +     A++G+G   A+ I+
Sbjct: 1359 ENDLFTTLELVNEMLERGFKFGKLDLYRSHATDFIIEEDTLIPPFVAMEGLGENVAKQIV 1418

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
             A  D  F S  +   R     ++  ++E        D  G      L +L         
Sbjct: 1419 RAREDGEFLSKTELRKR---GGVSSTLVEK------FDEMGI-----LGNLPE------- 1457

Query: 915  VEKNRTNKHENIFAH 929
                  +   ++F  
Sbjct: 1458 ------DNQLSLFDD 1466



 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++ +++D  A    PAIAITD  N+ S      +A  AGI+ I 
Sbjct: 344 VEFHAHTNMSTMDALPTVESLIDTAAKWGHPAIAITDHANVQSFPHGYHRAKKAGIKAIF 403

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 404 GLEANIVEDKVPISYNEVDMNLHEATYVVF 433


>gi|296877258|ref|ZP_06901298.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912]
 gi|296431778|gb|EFH17585.1| DNA polymerase III PolC [Streptococcus parasanguinis ATCC 15912]
          Length = 1464

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 283/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + ++       V    L V    G + + +LVS        +   RI  + L +   
Sbjct: 602  NIDLIDENSYKKARVKHATLYVKNQTGLKNMFKLVSLSGTK-YFEGVPRIPKTVL-DAHR 659

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +  A        A +    +        ++ +               
Sbjct: 660  EGLILGSACSEGEVFDAVMSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 712

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  +L  ED    ++         ++      
Sbjct: 713  KDMDELQTIIKSLIEVGDRLGKPVLATGNVHYLEPEDEIYREIIVRSLGQGAMINRTIGH 772

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     +   +    +       
Sbjct: 773  GEDAQPAPLPKAHFRTTNEMLDEFAFLGEDLARKIVIENTNALAETFEPVEVVKGDLYTP 832

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        +A            I           R++ EL  I    F+  +L
Sbjct: 833  FIDKAEETVAELTYKRAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 882

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +  + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 883  ASQMLVHRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCDQCQYSEFITDGSY 941

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 942  GSGFDMPDKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1001

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  + +  R  +                    
Sbjct: 1002 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDFGKYYRDAE-------------------- 1040

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++    G+ R    H  GIV       +    P+         +
Sbjct: 1041 -------------VERLALGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1087

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1088 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNDIPMDDPGVMALF 1141

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1142 SGTEVLGVTAEQIGTPTGMLGIPEFGTNFVRGMVEET---HPTTFAELLQLSGLSHGTDV 1198

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1199 WLGNAQDLIKAGIADLSTVIGCRDDIMVYLMHAGLKPKMAFTIMERVRKGMWLKISEEER 1258

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1259 NGYIQAMKENNVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPLYYYCA 1314

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1315 YFSIRAKAFDIKTMGAGLEAVKARMKEIAEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1374

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ I+ A  +  F S  +   R   
Sbjct: 1375 FGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQIVRAREEGEFLSKTELRKR--- 1431

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              ++  ++E       +D  G      L ++               +   ++F  
Sbjct: 1432 GGVSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDD 1462



 Score = 94.9 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 38/97 (39%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  ++ K A     A+AITD  N+ S     + A  
Sbjct: 333 MPEGERRVEFHAHTNMSTMDALPEVEELIAKAAEWGHKAVAITDHGNVQSFPHGFKAAKK 392

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I         N+          +V 
Sbjct: 393 AGIQLIYGMEANIVEDKVPITYNEVDLDLNEATYVVF 429


>gi|76787214|ref|YP_330464.1| DNA polymerase III PolC [Streptococcus agalactiae A909]
 gi|76562271|gb|ABA44855.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae A909]
          Length = 1468

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 141/975 (14%), Positives = 289/975 (29%), Gaps = 200/975 (20%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +   M+ N K+  +       +    + V    G + + +LVS
Sbjct: 589  FLKEARENR-------DVTNLMELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVS 641

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +    +   RI  S L +   EGL++ T  S G +  A   N    A      +   
Sbjct: 642  LSNVK-YFEGVARIPRSVL-DAHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYD-- 697

Query: 178  FGDRLYVNLQ----------RHRGYDR----YRESQVVQLAYTHELPLVATNNSLFLSEE 223
                 ++ +           R    D          ++++    + P++AT N  ++  E
Sbjct: 698  -----FIEVMPPAIYRPLVVRDLIKDEAGIQQIIRDLIEVGRRLDKPVLATGNVHYIEPE 752

Query: 224  DYEAHDVLM-----AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            D    ++++         +  + + +  +  P      R+    +        +   EI 
Sbjct: 753  DEIYREIIVRSLGQGAMINRTIGRGEDAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYEIV 812

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
               +         +               E  +     A                     
Sbjct: 813  VTNTNTFADRFEDVEVVKGDLYTPFVDRAEERVAELTYAKAFEIYGNPL------PDIID 866

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++P+
Sbjct: 867  LRIEKELASILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPM 925

Query: 399  R-----------------------------------------FSLLFERFLNPDRMSMPD 417
                                                        + FE FL  D   +PD
Sbjct: 926  PPHYVCPNCQHSEFITDGSCGSGYDLPNKNCPKCGTLYKKDGQDIPFETFLGFDGDKVPD 985

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  D +      V++ +G E   +  T G++  K A   V                
Sbjct: 986  IDLNFSGDDQPSAHLDVRDIFGEEYAFRAGTVGTVAEKTAFGFVK--------------- 1030

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IG 535
                   +        +D+                  +    G+ R    H  GIV    
Sbjct: 1031 ------GYERDYNKFYNDAEVERL-------------ATGAAGVKRSTGQHPGGIVVIPN 1071

Query: 536  DRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
               +    P+             T FN   I++  ++K D LG    T+++K      Q 
Sbjct: 1072 YMDVYDFTPVQYPADDMTAAWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQD 1125

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLY 650
               +D S I  DD +   L +    LG+   Q+ +      +     + +  ++      
Sbjct: 1126 LSGIDPSNILPDDPDVMKLFSGTEVLGVTEEQIGTPTGMLGIPEFGTNFVRGMVNET--- 1182

Query: 651  RPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
             P     ++  +   +G +  +     +      T   +I     + +  + +G     A
Sbjct: 1183 HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLSTVIGCRDDIMVYLMHAGLQPKMA 1242

Query: 711  DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
              +   + K +  ++ + +      A ++       +     +     Y F K+HAAAY 
Sbjct: 1243 FTIMERVRKGLWLKISEDERNGYIQAMRDNNVPDWYIESCGKI----KYMFPKAHAAAYV 1298

Query: 771  VISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK-------------------------- 804
            +++ + A+ K HYP+ +  A  ++     E                              
Sbjct: 1299 LMALRVAYFKVHYPIFYYCAYFSIRAKAFELRTMSAGLDAVKARMKDITEKRQRNEATNV 1358

Query: 805  ---------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIM 854
                        +  +   +     +      DF + ++ +     A++G+G   A+ I+
Sbjct: 1359 ENDLFTTLELVNEMLERGFKFGKLDLYRSHATDFIIEEDTLIPPFVAMEGLGENVAKQIV 1418

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQW 914
             A  D  F S  +   R     ++  ++E        D  G      L +L         
Sbjct: 1419 RAREDGEFLSKTELRKR---GGVSSTLVEK------FDEMGI-----LGNLPE------- 1457

Query: 915  VEKNRTNKHENIFAH 929
                  +   ++F  
Sbjct: 1458 ------DNQLSLFDD 1466



 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++ +++D  A    PAIAITD  N+ S      +A  AGI+ I 
Sbjct: 344 VEFHAHTNMSTMDALPTVESLIDTAAKWGHPAIAITDHANVQSFPHGYHRAKKAGIKAIF 403

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 404 GLEANIVEDKVPISYNEVDMNLHEATYVVF 433


>gi|221231173|ref|YP_002510325.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669]
 gi|220673633|emb|CAR68120.1| DNA polymerase III PolC-type [Streptococcus pneumoniae ATCC 700669]
          Length = 1463

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 134/955 (14%), Positives = 285/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +  A        A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALADIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPNKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNEIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLDAIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSDATEFIIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 94.5 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLLEATYVVF 428


>gi|327462769|gb|EGF09091.1| DNA polymerase III PolC [Streptococcus sanguinis SK1057]
          Length = 1462

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 135/955 (14%), Positives = 288/955 (30%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-------- 193
            EGLI+ +  S G +  A        A +    +        ++ +     Y+        
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYEPLIAKEQI 710

Query: 194  ------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 711  KDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 770

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
              + +  P         N       F     A +  +    + +   +    +       
Sbjct: 771  GENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQLAETFEPVEVVKGDLYTP 830

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 831  FIDKAEETVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 880

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 881  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSY 939

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 940  GSGFDMPDKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 999

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1000 FGAEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1038

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1039 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1085

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1086 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNDIPMDDAGVMALF 1139

Query: 613  TTKGTLGIFQ--LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+ Q  + +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1140 SGTDILGVTQEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1196

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  +  G     A  +   + K +  ++ +++ 
Sbjct: 1197 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGLDPKMAFTIMERVRKGLWLKISEEER 1256

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1257 NGYIAAMKENNVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1312

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1313 YFSIRAKAFDIKTMSGGLDAVKRRMNEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFK 1372

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F + ++ +    +A+ G+G   AR ++ A  +  F S  +   R   
Sbjct: 1373 FGKLDLYKSHATEFLIEEDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR--- 1429

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1430 GGLSSTLVEK------MDDMGI-----LGNMPE-------------DNQLSLFDE 1460



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  AGIQ I 
Sbjct: 338 VEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKKAGIQLIY 397

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I       + N+          +V 
Sbjct: 398 GMEANIVEDRVPIVYNEVDMELSDATYVVF 427


>gi|125718854|ref|YP_001035987.1| DNA polymerase III PolC [Streptococcus sanguinis SK36]
 gi|166217455|sp|A3CQI2|DPO3_STRSV RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|125498771|gb|ABN45437.1| DNA polymerase III polC-type, putative [Streptococcus sanguinis SK36]
          Length = 1462

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 135/955 (14%), Positives = 287/955 (30%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-------- 193
            EGLI+ +  S G +  A        A +    +        ++ +     Y+        
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYEPLIAKEQI 710

Query: 194  ------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 711  KDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 770

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
              + +  P         N       F     A +  +    + +   +    +       
Sbjct: 771  GENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQLAETFEPVEVVKGDLYTP 830

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 831  FIDKAEETVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 880

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 881  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSY 939

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 940  GSGFDMPDKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 999

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1000 FGSEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1038

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1039 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1085

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1086 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNDIPMDDAGVMALF 1139

Query: 613  TTKGTLGIFQ--LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+ Q  + +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1140 SGTDILGVTQEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1196

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  +  G     A  +   + K +  ++ +++ 
Sbjct: 1197 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGLDPKMAFTIMERVRKGLWLKISEEER 1256

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1257 NGYIAAMKENNVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1312

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1313 YFSIRAKAFDIKTMSGGLDAVKRRMSEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFK 1372

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +    +A+ G+G   AR ++ A  +  F S  +   R   
Sbjct: 1373 FGKLDLYKSHATEFLIEGDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR--- 1429

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1430 GGLSSTLVEK------MDDMGI-----LGNMPE-------------DNQLSLFDE 1460



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  AGIQ I 
Sbjct: 338 VEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKKAGIQLIY 397

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I       + N+          +V 
Sbjct: 398 GMEANIVEDRVPIVYNEVDMELSDATYVVF 427


>gi|327390689|gb|EGE89029.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae GA04375]
          Length = 1463

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 134/955 (14%), Positives = 285/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +  A        A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENPNALADIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPNKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNEIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLDAIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 96.8 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEIEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|317495743|ref|ZP_07954108.1| DNA polymerase III [Gemella moribillum M424]
 gi|316914196|gb|EFV35677.1| DNA polymerase III [Gemella moribillum M424]
          Length = 1446

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 149/907 (16%), Positives = 290/907 (31%), Gaps = 193/907 (21%)

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            +LV  A+G + L  LVS             I  S L++   + L++ +G S   +     
Sbjct: 621  ILVKNAKGLKDLFRLVSYSCTEYLSSGKPTIPRSLLEQY-RQDLLIGSGNSENEVFEELL 679

Query: 161  FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELP---------- 210
             +     E  +  +        Y+ +Q    Y+ +  ++  ++A   EL           
Sbjct: 680  NSKEDKVESIIDFYD-------YIEIQPMNHYESFITNE--RIADKTELEIILKKLISLS 730

Query: 211  ------LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
                  +VAT +  +L E  +    +L     +         +                F
Sbjct: 731  KKKGKIVVATGDCYYLDEYQHVYRQILRLSVKNNPG--ARDIKPMATFLTTEEMLEEFSF 788

Query: 265  SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
             D     E  +E   + S  +++  P+  +          K   +E+RN + +       
Sbjct: 789  LDKELREEIVIENTHKISDKIELVVPLKDKLYTPNI----KGAADEVRNLSYSMAHKIYG 844

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +         +   +RL+ EL  I    FS  +LI    ++ +  +   VG  RGS   S
Sbjct: 845  E------ELPEIVEKRLEKELTSIIGNGFSVVYLISHKLVKKSLDDGYLVG-SRGSVGSS 897

Query: 385  VTAYALTITDIDPLR-----------------------------------------FSLL 403
            + A  + IT+++PL                                            + 
Sbjct: 898  LVATMMEITEVNPLAPHYVCPKCKHSEFFLNAEYASGFDLPNKNCPHCDVKMTKDGQDIP 957

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  +   +PD D++F  + +     + +  +G + V +  T  ++  K A      
Sbjct: 958  FETFLGFNGDKVPDIDLNFSGEYQATAHNFTKEIFGEDYVYRAGTIATVAEKTAYS---- 1013

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
                 Y + + + K                                 L  I+   EG  R
Sbjct: 1014 -FTRDYYEKNEIEK-----------------------------RNIDLERIAAGCEGAKR 1043

Query: 524  HASTHAAGI--VIGDRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKT 578
                H  GI  V  D  +    P       +      T F+   I    ++KFD LG   
Sbjct: 1044 TTGQHPGGILVVPNDMDIFDFTPYQYPADDETSSWRTTHFDFHSIHD-NILKFDILGHDD 1102

Query: 579  LTLLQKSLDFLA--------QRGVKVDLSLIPFDDHETYHLLTTKG-TLGIFQLESSGMR 629
             T+++K  D                + +         T   + +   T GI +  ++ + 
Sbjct: 1103 PTMIRKLQDLSGINPKTIDVSDPEVMGIFSGVEALGVTREQVNSASGTFGIPEFGTNFVI 1162

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
            Q L+  +P    +++ +  L                N +E I +    +  ++     ++
Sbjct: 1163 QMLDDTKPTTYSELVQISGLSHG-------TDVWLGNAQELIRNGTCELKDVIGCRDDIM 1215

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +Y         + +G     A  +  ++ K      D     F +   +N +      + 
Sbjct: 1216 VYL--------IHAGLEEGLAFTIMESVRKGKGLTED-----FEAAMKENDVPAWYIDSC 1262

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI------- 802
             ++      Y F K+HA AY +++ + AW K H P+ +  A  ++   + + I       
Sbjct: 1263 KKI-----KYMFPKAHACAYVLMALRIAWFKVHQPLTYYCAYYSVRASDFDIITVVKGEK 1317

Query: 803  ---------------------------KKFCQDARQFNIQIMPPSVNTPC-VDFKVGDNR 834
                                        +   +  +         +      D+ +  N 
Sbjct: 1318 SLKAKIEEIKTTDKNELTAKDKDALVSYEIANEMMERGFTFSKVDLEKSASHDYIMEGNT 1377

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +    + + G+G   A+ I++A  +KPF S+EDF  R     ++  V+E L   G L   
Sbjct: 1378 LIPPFSIVPGLGDNVAKKIVQARLEKPFLSIEDFSKR---GSVSSTVVEYLREMGTLKGL 1434

Query: 895  GYSRMQL 901
               R QL
Sbjct: 1435 -PERAQL 1440



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 8/94 (8%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS-QKA---CAAGI 67
           + L  H+  S LEG  +  + L +  A    AIA TDT   +  ++   +         I
Sbjct: 340 IELNTHTKMSQLEGISTAKDYLARALAWGHEAIAFTDT---YG-VQAYPEICLGSKGKDI 395

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           +PI G    I        TN  K        +V 
Sbjct: 396 KPIYGLNAFIMDDSITATTNPKKLKLREATYVVF 429


>gi|307710886|ref|ZP_07647313.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            mitis SK321]
 gi|307617331|gb|EFN96504.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            mitis SK321]
          Length = 1463

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 134/955 (14%), Positives = 285/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +  A        A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENPNALADIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPNKDCPKCGNKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNEIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLDAIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|293364694|ref|ZP_06611411.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037]
 gi|307702942|ref|ZP_07639889.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            oralis ATCC 35037]
 gi|291316144|gb|EFE56580.1| DNA polymerase III PolC [Streptococcus oralis ATCC 35037]
 gi|307623335|gb|EFO02325.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            oralis ATCC 35037]
          Length = 1463

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 134/955 (14%), Positives = 285/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +  A        A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPNKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNEIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGMWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 DGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLDAIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRARQEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDD 1461



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|196234155|ref|ZP_03132988.1| DNA-directed DNA polymerase [Chthoniobacter flavus Ellin428]
 gi|196221806|gb|EDY16343.1| DNA-directed DNA polymerase [Chthoniobacter flavus Ellin428]
          Length = 340

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 60/306 (19%), Positives = 113/306 (36%), Gaps = 24/306 (7%)

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
              +      + G S  +   + + +  FA YGF +SHA ++A+++Y +AW K H   EF 
Sbjct: 5    CAKLRKRMKEKGHSDEVTELVVKSVQSFAVYGFPESHAISFALLAYASAWYKVHRAPEFY 64

Query: 789  AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGT 847
            A+ +  +           +DA++  +  +P SV     +  V D+  +   L  + G+  
Sbjct: 65   ASLLNNQPMGFYSSATLIKDAQRRGLHFLPVSVCESEWNCTVIDDSTVRLGLCVVNGLRQ 124

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDN 907
              A H++     +PF S+ DF  R    K  +R    L   GAL      R   L  ++ 
Sbjct: 125  EHAAHLLLERMRQPFTSVADFNLRTKLTKPEQRT---LARIGALSGLSAHRRDALWQVEL 181

Query: 908  IQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHP 967
                            E++FA                   S  R   +   +      HP
Sbjct: 182  PFDS------------ESLFAKPATPPPTTPLA----PMTSWERMHADHSGMNLSIGKHP 225

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            + + +  + +       +      G  +++A  V+ +Q+  T KG    +++  +     
Sbjct: 226  MRLLRDRVPQ--AWRAADLAQGANGTYVQIAGQVICRQRPGTAKG--FVFISLEDETGVA 281

Query: 1028 EANFFP 1033
             A   P
Sbjct: 282  NAIVVP 287


>gi|307709855|ref|ZP_07646304.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            mitis SK564]
 gi|307619404|gb|EFN98531.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            mitis SK564]
          Length = 1463

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 132/955 (13%), Positives = 285/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        + + RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQIGLKNIFKLVSLSNTK-YFEGAPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  + G +  A        A +    +        ++ +               
Sbjct: 659  EGLILGSACAEGEVFDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     +   +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEDLARKLVIENTNALAETFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFIIDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPNKDCPKCSHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNEIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGGGLDAIKRRMEEIAEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRARQEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEDERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|327460706|gb|EGF07041.1| DNA polymerase III PolC [Streptococcus sanguinis SK1]
          Length = 1462

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 135/955 (14%), Positives = 288/955 (30%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-------- 193
            EGLI+ +  S G +  A        A +    +        ++ +     Y+        
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYEPLIAKEQI 710

Query: 194  ------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 711  KDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 770

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
              + +  P         N       F     A +  +    + +   +    +       
Sbjct: 771  GENAQPAPLPKAHFRTTNEMLDEFAFLGEELAKKLVITNPNQLAETFEPVEVVKGDLYTP 830

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL+ I    F+  +L
Sbjct: 831  FIDKAEETVAELTYQKAFE----------IYGNPLPDIVDLRIEKELSSILGNGFAVIYL 880

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 881  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSY 939

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 940  GSGFDMPDKDCPECGRKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 999

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1000 FGAEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1038

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1039 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1085

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1086 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNDIPMDDAGVMALF 1139

Query: 613  TTKGTLGIFQ--LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+ Q  + +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1140 SGTDILGVTQEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1196

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  +  G     A  +   + K +  ++ +++ 
Sbjct: 1197 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGLEPKMAFTIMERVRKGLWLKISEEER 1256

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1257 NGYIAAMKENNVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1312

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1313 YFSIRAKAFDIKTMSGGLDAVKRRMDEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFK 1372

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +    +A+ G+G   AR ++ A  +  F S  +   R   
Sbjct: 1373 FGKLDLYKSHATEFLIEGDTLIPPFSAMDGLGDNVARQVVRARKEGEFLSKTELRKR--- 1429

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1430 GGLSSTLVEK------MDDMGI-----LGNMPE-------------DNQLSLFDE 1460



 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  AGIQ I 
Sbjct: 338 VEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKKAGIQLIY 397

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I       + N+          +V 
Sbjct: 398 GMEANIVEDRVPIVYNEVDMELSNATYVVF 427


>gi|324989747|gb|EGC21690.1| DNA polymerase III PolC [Streptococcus sanguinis SK353]
          Length = 1462

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 135/955 (14%), Positives = 287/955 (30%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-------- 193
            EGLI+ +  S G +  A        A +    +        ++ +     Y+        
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYEPLIAKEQI 710

Query: 194  ------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 711  KDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 770

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
              + +  P         N       F     A +  +    + +   +    +       
Sbjct: 771  GENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQLAETFEPVEVVKGDLYTP 830

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 831  FIDKAEETVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 880

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 881  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSY 939

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 940  GSGFDMPDKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 999

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1000 FGAEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1038

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1039 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1085

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1086 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNDIPMDDSGVMALF 1139

Query: 613  TTKGTLGIFQ--LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+ Q  + +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1140 SGTDILGVTQEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1196

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  +  G     A  +   + K +  ++ +++ 
Sbjct: 1197 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGLDPKMAFTIMERVRKGLWLKISEEER 1256

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1257 NGYIAAMKENNVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1312

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1313 YFSIRAKAFDIKTMSGGLDAVKRRMNEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFK 1372

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +    +A+ G+G   AR ++ A  +  F S  +   R   
Sbjct: 1373 FGKLDLYKSHATEFLIEGDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR--- 1429

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1430 GGLSSTLVEK------MDDMGI-----LGNMPE-------------DNQLSLFDE 1460



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  AGIQ I 
Sbjct: 338 VEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKKAGIQLIY 397

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I       + N+          +V 
Sbjct: 398 GMEANIVEDRVPIVYNEVDMELSDATYVVF 427


>gi|322377559|ref|ZP_08052049.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            sp. M334]
 gi|321281324|gb|EFX58334.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            sp. M334]
          Length = 1463

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 284/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +  A        A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL---------MAVAHST 238
                  +     ++++      P++AT N  ++  E+    +++         +      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAIINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPIEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +  + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVHRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPNKDCPNCGYKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSSIDPNEIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLDAIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|325695495|gb|EGD37395.1| DNA polymerase III PolC [Streptococcus sanguinis SK150]
          Length = 1462

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 135/955 (14%), Positives = 287/955 (30%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-------- 193
            EGLI+ +  S G +  A        A +    +        ++ +     Y+        
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYEPLIAKEQI 710

Query: 194  ------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 711  KDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 770

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
              + +  P         N       F     A +  +    + +   +    +       
Sbjct: 771  GENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQLAETFEPVEVVKGDLYTP 830

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 831  FIDKAEETVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 880

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 881  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSY 939

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 940  GSGFDMPDKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 999

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1000 FGSEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1038

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1039 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1085

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1086 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNDIPMDDAGVMALF 1139

Query: 613  TTKGTLGIFQ--LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+ Q  + +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1140 SGTDILGVTQEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1196

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  +  G     A  +   + K +  ++ +++ 
Sbjct: 1197 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGLDPKMAFTIMERVRKGLWLKISEEER 1256

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1257 NGYIAAMKENNVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1312

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1313 YFSIRAKAFDIKTMSGGLDAVKRRMSEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFK 1372

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +    +A+ G+G   AR ++ A  +  F S  +   R   
Sbjct: 1373 FGKLDLYKSHATEFLIEGDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR--- 1429

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1430 GGLSSTLVEK------MDDMGI-----LGNMPE-------------DNQLSLFDE 1460



 Score = 89.1 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  AGIQ I 
Sbjct: 338 VEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKKAGIQLIY 397

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
             + +I       + N+          +V 
Sbjct: 398 SMEANIVEDRVPIVYNEVDMELSDATYVVF 427


>gi|306824435|ref|ZP_07457781.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str.
            73H25AP]
 gi|304433222|gb|EFM36192.1| DNA polymerase III PolC [Streptococcus sp. oral taxon 071 str.
            73H25AP]
          Length = 1463

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 128/897 (14%), Positives = 270/897 (30%), Gaps = 174/897 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +  A        A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMDELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENPNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPNKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNEIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGMWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLDAIKRRMQEIAEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R
Sbjct: 1374 FGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR 1430



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|322392646|ref|ZP_08066106.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780]
 gi|321144638|gb|EFX40039.1| DNA polymerase III PolC [Streptococcus peroris ATCC 700780]
          Length = 1463

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 134/955 (14%), Positives = 282/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARVKHATIYVKNQIGLKNIFKLVSLSNTQ-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ T  + G +           A +    +        ++ +               
Sbjct: 659  EGLILGTACAEGEVFDTILSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL---------MAVAHST 238
                        ++++      P++AT N  +L  ED    +++         +      
Sbjct: 712  KDLAELETIIKNLIEVGDRLGKPVLATGNVHYLEPEDEIYREIIVRSLGQGAVINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  ++     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEDLARKLVIDNTNAMAEIFEPIEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +  + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVHRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCSQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPNKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++  K A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVADKTAYGFV-KGYERDYGKFYREAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNEIPMDDPGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +S     +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTSTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGMWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANNVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLDAIKRRMQEIAEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSQATEFIIDGDTLIPPFVAMDGLGENVAKQLVRARQEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDD 1461



 Score = 97.6 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 40/97 (41%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  ++ K A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEELVAKAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|328944876|gb|EGG39036.1| DNA polymerase III PolC [Streptococcus sanguinis SK1087]
          Length = 1462

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 134/955 (14%), Positives = 286/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-------- 193
            EGLI+ +  S G +  A        A +    +        ++ +     Y+        
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYEPLIAKEQI 710

Query: 194  ------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 711  KDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIDPEEEIYREIIVRSLGQGAMINRTIGH 770

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
              + +  P         N       F     A +  +    + +   +    +       
Sbjct: 771  GENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQLAETFEPVEVVKGDLYTP 830

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 831  FIDKAEETVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 880

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 881  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSY 939

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 940  GSGFDMPDKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 999

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1000 FGAEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1038

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1039 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1085

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + I  DD     L 
Sbjct: 1086 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNDISMDDAGVMALF 1139

Query: 613  TTKGTLGIFQ--LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+ Q  + +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1140 SGTDILGVTQEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1196

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  +  G     A  +   + K +  ++ +++ 
Sbjct: 1197 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGLDPKMAFTIMERVRKGLWLKISEEER 1256

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1257 NGYIAAMKENNVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1312

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1313 YFSIRAKAFDIKTMSGGLDAVKRRMNEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFK 1372

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +    +A+ G+G   AR ++ A  +  F S  +   R   
Sbjct: 1373 FGKLDLYKSHATEFLIEGDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR--- 1429

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1430 GGLSSTLVEK------MDDMGI-----LGNMPE-------------DNQLSLFDE 1460



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  AGIQ I 
Sbjct: 338 VEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKKAGIQLIY 397

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I       + N+          +V 
Sbjct: 398 GMEANIVEDRVPIVYNEVDMELSDATYVVF 427


>gi|327472427|gb|EGF17858.1| DNA polymerase III PolC [Streptococcus sanguinis SK408]
          Length = 1462

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 135/955 (14%), Positives = 288/955 (30%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-------- 193
            EGLI+ +  S G +  A        A +    +        ++ +     Y+        
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYEPLIAKEQI 710

Query: 194  ------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 711  KDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 770

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
              + +  P         N       F     A +  +    + +   +    +       
Sbjct: 771  GENAQPAPLPKAHFRTTNEMLDEFAFLGEELAKKLVITNPNQLAETFEPVEVVKGDLYTP 830

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL+ I    F+  +L
Sbjct: 831  FIDKAEETVAELTYQKAFE----------IYGNPLPDIVDLRIEKELSSILGNGFAVIYL 880

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 881  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSY 939

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 940  GSGFDMPDKDCPECGRKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 999

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1000 FGAEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1038

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1039 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1085

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1086 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNDIPMDDAGVMALF 1139

Query: 613  TTKGTLGIFQ--LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+ Q  + +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1140 SGTDILGVTQEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1196

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  +  G     A  +   + K +  ++ +++ 
Sbjct: 1197 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGLEPKMAFTIMERVRKGLWLKISEEER 1256

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1257 NGYIAAMKENNVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1312

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1313 YFSIRAKAFDIKTMSGGLDAVKRRMDEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFK 1372

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +    +A+ G+G   AR ++ A  +  F S  +   R   
Sbjct: 1373 FGKLDLYKSHATEFLIEGDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR--- 1429

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1430 GGLSSTLVEK------MDDMGI-----LGNMPE-------------DNQLSLFDE 1460



 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  AGIQ I 
Sbjct: 338 VEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKKAGIQLIY 397

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I       + N+          +V 
Sbjct: 398 GMEANIVEDRVPIVYNEVDMELSNATYVVF 427


>gi|322411039|gb|EFY01947.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
            dysgalactiae ATCC 27957]
          Length = 1465

 Score =  185 bits (470), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 134/915 (14%), Positives = 282/915 (30%), Gaps = 169/915 (18%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+       ++ +Q N  +  +       +    + V    G + + +LV
Sbjct: 586  FLKDAREKHGIK-------NL-LQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDF 695

Query: 175  KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    +Y       L + +         ++++      P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKPVLATGNVHYLEPEEEIYRE 755

Query: 230  V---------LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            +         ++          +  P         N       F     A +  V+  + 
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKVHFRTTNEMLDEFTFLGKDLAYQVVVQNTQD 815

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +  ++    +         D  ++        KA            I           R
Sbjct: 816  MADRIEEVEVVKGDLYTPYIDKAEETVAELTYQKAFE----------IYGNPLPDIIDLR 865

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            ++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++P+  
Sbjct: 866  IEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPP 924

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL  D   +PD D
Sbjct: 925  HYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKVPDID 984

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R  +  
Sbjct: 985  LNFSGDDQPSAHLDVRDIFGAEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYRDAE-- 1041

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDR 537
                                           +  ++    G+ R    H  GIV      
Sbjct: 1042 -------------------------------VDRLAAGAAGVKRTTGQHPGGIVVIPNYM 1070

Query: 538  PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+             T FN   I++  ++K D LG    T+++K      Q   
Sbjct: 1071 DVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQDLS 1124

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +D   IP DD     L +    LG+   Q+ +      +     + +  ++       P
Sbjct: 1125 GIDPITIPADDPGVMALFSGTEVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVNET---HP 1181

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                 ++  +   +G +  +     +      T   +I     + +  + +G     A  
Sbjct: 1182 TTFSELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLQPKMAFT 1241

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K +  ++ +++      A +        +     +     Y F K+HAAAY ++
Sbjct: 1242 IMERVRKGLWLKISEEERNGYIDAMRKNNVPDWYIESCGKI----KYMFPKAHAAAYVLM 1297

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---------------------------- 804
            + + A+ K H+P+ +  A  ++     E                                
Sbjct: 1298 ALRVAYFKVHHPLMYYCAYFSIRAKAFELKTMSGGLEAVKARMEDISIKRKNNEATNVEN 1357

Query: 805  -------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                      +  +   +     +      +F++  + +     A++G+G   A+ I++A
Sbjct: 1358 DLFTTLEIVNEMLERGFKFGKLDLYKSKATEFQIEGDTLIPPFVALEGLGENVAKQIVKA 1417

Query: 857  SADKPFDSLEDFCSR 871
              +  F S  +   R
Sbjct: 1418 RQEGEFLSKMELRKR 1432



 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  AGI+ I 
Sbjct: 341 VEFHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARKAGIKAIF 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         +           +V 
Sbjct: 401 GLEANVVEDKVPISYDPVDMDLHEATYVVF 430


>gi|315222325|ref|ZP_07864231.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211]
 gi|315188658|gb|EFU22367.1| DNA polymerase III, alpha subunit [Streptococcus anginosus F0211]
          Length = 1456

 Score =  185 bits (470), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 130/889 (14%), Positives = 278/889 (31%), Gaps = 158/889 (17%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 594  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 651

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY--------- 192
            EGLI+ T  S G +  A        A +    +        ++ +     Y         
Sbjct: 652  EGLILGTACSEGEVFDAVVSQGVDAAVEVAKYYD-------FIEIMPPAIYAPLIAKEQV 704

Query: 193  ---DRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRP 246
               +        ++++    + P++AT +  ++  E+    ++++ ++    ++++    
Sbjct: 705  KDVEELHTIIKNLIEVGNRLDKPVLATGDVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 764

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                      ++   +    L E      E+A +               IE    D+   
Sbjct: 765  GENAQPAPLPKAHFRTTNEMLDEFAFLGDELAHKVVIDNPNQLAATFEPIEVVKGDLYTP 824

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              ++   K       +  +  I          +R++ EL+ I    F+  +L     +Q 
Sbjct: 825  FIDKSEEKVAEMTYAKAFE--IYGNPLPDIVDRRIERELSSILGNGFAVIYLASQMLVQR 882

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            + +    VG  RGS   S  A  + IT+++PL                            
Sbjct: 883  SNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSYGSGFDMPD 941

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL  D   +PD D++F  + +      V++ +G E   +
Sbjct: 942  KDCPHCGYKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFR 1001

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++ AK A   V                       +         D+         
Sbjct: 1002 AGTVGTVAAKTAYGFVK---------------------GYERDYNKFYRDAEVERL---- 1036

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNM 560
                     +Q   G+ R    H  GIV       +    P+         +   T FN 
Sbjct: 1037 ---------AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDLTAEWQTTHFNF 1087

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
              I++  ++K D LG    T+++K      Q    +D + IP DD E   L +    LG+
Sbjct: 1088 HDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNEIPMDDQEVMALFSGTDVLGV 1141

Query: 621  FQ--LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
             Q  + +      +     + +  ++       P     ++  +   +G +  +     +
Sbjct: 1142 TQEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDVWLGNAQDL 1198

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
                      +I     + +  +  G     A  +   + K +  ++  ++      A K
Sbjct: 1199 IKQGIADLSTVIGCRDDIMVYLMHKGLEPKMAFTIMERVRKGMWLKISDEERNGYIAAMK 1258

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
                    +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A  ++    
Sbjct: 1259 ENNVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIRAKA 1314

Query: 799  VEKIKK-----------------------------------FCQDARQFNIQIMPPSVNT 823
             +                                          +  +   +     +  
Sbjct: 1315 FDIKVMSSGLDAVKRKMNEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFKFGKLDLYK 1374

Query: 824  PCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                +F +  + +    +A+ G+G   A+ +++A A+  F S  +   R
Sbjct: 1375 SDATEFLIDGDSLIPPFSAMDGLGDNVAKQLVKARAEGEFLSKTELRKR 1423



 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           +    H++ S ++    +  ++   A     A+AITD  N+ S     + A  AGIQ I 
Sbjct: 332 IEFHAHTNMSTMDALPEVEELIATAAKWGHKAVAITDHGNVQSFPHGYKAAKKAGIQLIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 392 GMEANIVEDRVPITYNEVDMELKEATYVVF 421


>gi|324992474|gb|EGC24395.1| DNA polymerase III PolC [Streptococcus sanguinis SK405]
 gi|324995996|gb|EGC27907.1| DNA polymerase III PolC [Streptococcus sanguinis SK678]
 gi|327488780|gb|EGF20579.1| DNA polymerase III PolC [Streptococcus sanguinis SK1058]
          Length = 1462

 Score =  185 bits (470), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 135/955 (14%), Positives = 288/955 (30%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-------- 193
            EGLI+ +  S G +  A        A +    +        ++ +     Y+        
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYEPLIAKEQI 710

Query: 194  ------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 711  KDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 770

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
              + +  P         N       F     A +  +    + +   +    +       
Sbjct: 771  GENAQPAPLPKAHFRTTNEMLDEFAFLGEELAKKLVITNPNQLAETFEPVEVVKGDLYTP 830

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL+ I    F+  +L
Sbjct: 831  FIDKAEETVAELTYQKAFE----------IYGNPLPDIVDLRIEKELSSILGNGFAVIYL 880

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 881  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSY 939

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 940  GSGFDMPDKDCPECGRKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 999

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1000 FGAEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1038

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1039 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1085

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1086 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNDIPMDDAGVMALF 1139

Query: 613  TTKGTLGIFQ--LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+ Q  + +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1140 SGTDILGVTQEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1196

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  +  G     A  +   + K +  ++ +++ 
Sbjct: 1197 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGLEPKMAFTIMERVRKGLWLKISEEER 1256

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1257 NGYIAAMKENNVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1312

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1313 YFSIRAKAFDIKTMSGGLDAVKRRMDEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFK 1372

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +    +A+ G+G   AR ++ A  +  F S  +   R   
Sbjct: 1373 FGKLDLYKSHATEFLIEGDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR--- 1429

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1430 GGLSSTLVEK------MDDMGI-----LGNMPE-------------DNQLSLFDE 1460



 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  AGIQ I 
Sbjct: 338 VEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKKAGIQLIY 397

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I       + N+          +V 
Sbjct: 398 GMEANIVEDRVPIVYNEVDMELSNATYVVF 427


>gi|307707703|ref|ZP_07644182.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            mitis NCTC 12261]
 gi|307616201|gb|EFN95395.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            mitis NCTC 12261]
          Length = 1463

 Score =  185 bits (470), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 132/955 (13%), Positives = 285/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLVSPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  + G +  A        A +    +        ++ +               
Sbjct: 659  EGLILGSACAEGEVFDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGERLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMVNRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALADIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +  + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVLRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPNKDCPKCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNEIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLDAIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNT-PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +     ++F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSQAIEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|325697436|gb|EGD39322.1| DNA polymerase III PolC [Streptococcus sanguinis SK160]
          Length = 1462

 Score =  185 bits (470), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 134/955 (14%), Positives = 288/955 (30%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-------- 193
            EGLI+ +  S G +  A        A +    +        ++ +     Y+        
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYEPLIAKEQI 710

Query: 194  ------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 711  KDQEELQTIIRNLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 770

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
              + +  P         N       F     A +  +    + +   +    +       
Sbjct: 771  GENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQLAETFEPVEVVKSDLYTP 830

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              +  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 831  FIEKAEETVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 880

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 881  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSY 939

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 940  GSGFDMPDKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 999

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1000 FGAEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1038

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1039 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1085

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1086 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNDIPMDDAGVMALF 1139

Query: 613  TTKGTLGIFQ--LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+ Q  + +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1140 SGTDILGVTQEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1196

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  +  G     A  +   + K +  ++ +++ 
Sbjct: 1197 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGLDPKMAFTIMERVRKGLWLKISEEER 1256

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1257 NGYIAAMKKNNVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1312

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1313 YFSIRAKAFDIKTMSGGLDAVKRRMNEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFK 1372

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F + ++ +    +A+ G+G   AR ++ A  +  F S  +   R   
Sbjct: 1373 FGKLDLYKSHATEFLIEEDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR--- 1429

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1430 GGLSSTLVEK------MDDMGI-----LGNMPE-------------DNQLSLFDE 1460



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  AGIQ I 
Sbjct: 338 VEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKKAGIQLIY 397

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I       + N+          +V 
Sbjct: 398 GMEANIVEDRVPIVYNEVDMELSDATYVVF 427


>gi|218510794|ref|ZP_03508672.1| DNA polymerase III alpha subunit protein [Rhizobium etli Brasil 5]
          Length = 345

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 80/244 (32%), Gaps = 25/244 (10%)

Query: 799  VEKIKKFCQDARQFNIQIMPPSVNTPCVDFK---VGDNRIYYSLAAIKGVGTTTARHIME 855
                 +   DA++   ++ P  +N    D     V    +   +  ++G+ T  +  I+ 
Sbjct: 14   FYAPAQIVIDAKKHGAEVRPVCINRSRWDCTLEEVEGTAVRLGMRLVRGLATADSARIVA 73

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL-DCFGYSRMQLLQSLDNIQKYAQW 914
            A  D+PF S++D   R     +    L  L  A A        R   L ++  ++     
Sbjct: 74   ARGDEPFASVDDMWRR---SGVPAASLVELAEADAFLPSLRLERRDALWAIKALRDE--- 127

Query: 915  VEKNRTNKHENIF-----AHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLD 969
                       +F        +     +    +            +   +G     HPL 
Sbjct: 128  --------PLPLFTAAAEREARAIAEQQEPDVELRQMTDGHNVVEDYTHIGLTLREHPLR 179

Query: 970  VYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
              +  L K  I    E++    G  +  A +V+ +Q+  + KG  + ++T  +       
Sbjct: 180  FLRADLAKRRIVTCAEAMTARDGQWLMAAGLVLVRQRPGSAKG--VMFITIEDETGIANV 237

Query: 1030 NFFP 1033
              +P
Sbjct: 238  VVWP 241


>gi|37784570|gb|AAP47636.1| DnaE precursor [Aphanizomenon ovalisporum]
          Length = 503

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 179/406 (44%), Positives = 254/406 (62%), Gaps = 27/406 (6%)

Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
           GS+ AYA+ IT+IDP+   LLFERFLNP+R SMPD D DFC ++RD+VI YV  KYG +R
Sbjct: 1   GSLVAYAMGITNIDPVHHGLLFERFLNPERKSMPDIDTDFCIEKRDKVIEYVTQKYGKDR 60

Query: 443 VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD----SRF 498
           VAQIITF  L +KA L+DV R L +PY + D++ KLIP     P  L+ +  D      F
Sbjct: 61  VAQIITFNRLTSKAVLKDVARVLNIPYGEADKMAKLIPVVRGKPTKLKVMISDETPAPEF 120

Query: 499 REARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQF 558
           +E    D  V   ++++ ++EG  +    HAAG+VI   PL ++VP+ R+      +TQ+
Sbjct: 121 KEKYDNDQKVRHWVDMAMRIEGTNKTFGVHAAGVVISAEPLDEIVPLQRN-NDGXVITQY 179

Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD--------------------L 598
            M+ +E  GL+K DFLGL+ LTL+QK++D + Q                           
Sbjct: 180 FMEDLESMGLLKMDFLGLRNLTLIQKTIDLIEQNSGVRIDPDEITGQERKAQKILAKGEY 239

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN- 657
             +P D  ++Y LL      GIFQLESSGMRQ +  ++P  IEDI ++++LYRPGP+D  
Sbjct: 240 KTLPKDVKKSYELLEAGDLEGIFQLESSGMRQIVRDLKPSNIEDISSILALYRPGPLDAG 299

Query: 658 -IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
            I  + NRK+GKE I    P++ P+L ET G ++YQEQ+M+ AQ ++GYSL +AD+LRRA
Sbjct: 300 LIPKFINRKHGKETIEYESPILXPVLNETYGXMVYQEQIMKXAQDMAGYSLGQADLLRRA 359

Query: 717 MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFN 762
           MGKK    M KQ+E+F+ GA+KNG+ K +A  +F+ +  FA+Y  +
Sbjct: 360 MGKKKVAXMQKQREKFVDGAAKNGVKKQVAEELFQQMLNFAEYCLS 405


>gi|313891131|ref|ZP_07824750.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pseudoporcinus SPIN 20026]
 gi|313120494|gb|EFR43614.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pseudoporcinus SPIN 20026]
          Length = 1466

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 140/973 (14%), Positives = 302/973 (31%), Gaps = 196/973 (20%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F ++A    G        L   +  N K+  +       V    + V    G + + +LV
Sbjct: 587  FLKEAREKHG--------LTNLLDLNTKLVAEDSYKKARVKHATIYVQNQIGLKNIFKLV 638

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S   +    +   RI  + L +   EGL++ TG S G +  A      + A +    +  
Sbjct: 639  SLSNVK-YFEGVPRIPRTVLDQY-REGLLLGTGCSEGEVFDAVLTKGVEAAAELANYYDF 696

Query: 175  KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    LY       L + +   +     ++++      P++AT N  ++  E+    +
Sbjct: 697  IEIMPPALYNPLIARELIKDQEGVQKIIFDLIEVGKRLNKPVLATGNVHYIEPEEAIYRE 756

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE---------ALENTVEIARR 280
            +++       +  +   R                 +++ +         A +  V+  + 
Sbjct: 757  IIVRSLGQGAMINRPIGRGEGAQPAPLPEAHFRTTNEMLDDFAFLGKELAYQVVVQNTQD 816

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +  ++    +         D  ++        KA            I           R
Sbjct: 817  FADRIEEVEVVKGDLYTPFIDKAEETVAELTYQKAFE----------IYGNPLPDIIDLR 866

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            ++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++P+  
Sbjct: 867  IEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPP 925

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL  D   +PD D
Sbjct: 926  HYVCPHCQHSEFITDGSVGSGYDLPNKNCPECGASYQKDGQDIPFETFLGFDGDKVPDID 985

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +      V++ +G E   +  T G++  K A   V +  +  + ++ R  +  
Sbjct: 986  LNFSGDDQPNAHLDVRDIFGAEYAFRAGTVGTVAEKTAYGFV-KGYERDFGKMYRDAE-- 1042

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDR 537
                                           +  ++    G+ R    H  GIV      
Sbjct: 1043 -------------------------------VDRLAAGAAGVKRTTGQHPGGIVVIPNYM 1071

Query: 538  PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+             T FN   I++  ++K D LG    T+++K      Q   
Sbjct: 1072 DVYDFTPVQFPAEDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQDLS 1125

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +D   IP DD     L +    LG+   Q+ +      +     + +  ++       P
Sbjct: 1126 GIDPKSIPVDDPGVMALFSGTEILGVTPEQIGTPTGMLGIPEFGTNFVRGMVNET---HP 1182

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                 ++  +   +G +  +     +      T   +I     + +  + +G     A  
Sbjct: 1183 TTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFT 1242

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K +  ++ + +      A +        +     +     Y F K+HAAAY ++
Sbjct: 1243 IMERVRKGLWLKISEDERNSYIEAMRKNHVPDWYIESCGKI----KYMFPKAHAAAYVLM 1298

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---------------------------- 804
            + + A+ K H+P+ +  A  ++     E                                
Sbjct: 1299 ALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLTAVKARMEDIALKKKTNEASNVEN 1358

Query: 805  -------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                      +  +   +     +     ++F++  + +     A++G+G   AR I+ A
Sbjct: 1359 DLYTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIEGDTLIPPFVALEGLGENVARQIVRA 1418

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
              +  F S  +   R      ++ ++E       +D  G      L +L           
Sbjct: 1419 RKEGEFLSKMELRKR---GGASQSLVEK------MDDMGI-----LGNLPE--------- 1455

Query: 917  KNRTNKHENIFAH 929
                +   ++F  
Sbjct: 1456 ----DNQLSLFDD 1464



 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 38/90 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  AGI+ I 
Sbjct: 342 VELHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARKAGIKAIF 401

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         +           +V 
Sbjct: 402 GLEANIVEDKVPIAYDPVDMDLHEATYVVF 431


>gi|323350531|ref|ZP_08086193.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66]
 gi|322123213|gb|EFX94898.1| DNA polymerase III PolC [Streptococcus sanguinis VMC66]
          Length = 1462

 Score =  185 bits (469), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 134/955 (14%), Positives = 288/955 (30%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-------- 193
            EGLI+ +  S G +  A        A +    +        ++ +     Y+        
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYEPLIAKEQI 710

Query: 194  ------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 711  KDQEELQTIIRNLIEVGNRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 770

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
              + +  P         N       F     A +  +    + +   +    +       
Sbjct: 771  GENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQLAETFEPVEVVKGDLYTP 830

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              +  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 831  FIEKAEETVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 880

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 881  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSY 939

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 940  GSGFDMPDKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 999

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1000 FGSEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1038

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1039 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1085

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1086 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNDIPMDDAGVMALF 1139

Query: 613  TTKGTLGIFQ--LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+ Q  + +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1140 SGTDILGVTQEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1196

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  +  G     A  +   + K +  ++ +++ 
Sbjct: 1197 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGLEPKMAFTIMERVRKGLWLKISEEER 1256

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1257 NGYIAAMKENNVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1312

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1313 YFSIRAKAFDIKTMSGGLDAVKRGMNEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFK 1372

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F + ++ +    +A+ G+G   AR ++ A  +  F S  +   R   
Sbjct: 1373 FGKLDLYKSHATEFLIEEDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR--- 1429

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1430 GGLSSTLVEK------MDDMGI-----LGNMPE-------------DNQLSLFDE 1460



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  AGIQ I 
Sbjct: 338 VEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKKAGIQLIY 397

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I       + N+          +V 
Sbjct: 398 GMEANIVEDRVPIVYNEVDMELSDATYVVF 427


>gi|56808719|ref|ZP_00366439.1| COG2176: DNA polymerase III, alpha subunit (gram-positive type)
            [Streptococcus pyogenes M49 591]
 gi|209560099|ref|YP_002286571.1| DNA polymerase III PolC [Streptococcus pyogenes NZ131]
 gi|209541300|gb|ACI61876.1| DNA polymerase III alpha subunit [Streptococcus pyogenes NZ131]
          Length = 1465

 Score =  185 bits (469), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 135/915 (14%), Positives = 284/915 (31%), Gaps = 169/915 (18%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+       ++ +Q N  +  +       +    + V    G + + +LV
Sbjct: 586  FLKDAREKHGIK-------NL-LQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLARYYDF 695

Query: 175  KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    +Y       L + +         ++++    + P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAVYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYRE 755

Query: 230  V---------LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            +         ++          +  P         N       F     A +  VE  + 
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVENTQD 815

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +  ++    +         D  ++        KA            I           R
Sbjct: 816  FADRIEEVEVVKGDLYTPYIDKAEETVAELTYQKAFE----------IYGNPLPDIIDLR 865

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            ++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++P+  
Sbjct: 866  IEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPP 924

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL  D   +PD D
Sbjct: 925  HYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKVPDID 984

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R  +  
Sbjct: 985  LNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYRDAE-- 1041

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDR 537
                                           +  ++    G+ R    H  GIV      
Sbjct: 1042 -------------------------------VDRLAAGAAGVKRTTGQHPGGIVVIPNYM 1070

Query: 538  PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+             T FN   I++  ++K D LG    T+++K      Q   
Sbjct: 1071 DVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQDLS 1124

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +D   IP DD     L +    LG+   Q+ +      +     + +  ++       P
Sbjct: 1125 GIDPITIPADDPGVMALFSGTEILGVTPEQIGTPTGMLGIPEFGTNFVRGMVNET---HP 1181

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                 ++  +   +G +  +     +      T   +I     + +  + +G     A  
Sbjct: 1182 TTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFT 1241

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K +  ++ +++      A +        +     +     Y F K+HAAAY ++
Sbjct: 1242 IMERVRKGLWLKISEEERNGYIDAMRENNVPDWYIESCGKI----KYMFPKAHAAAYVLM 1297

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---------------------------- 804
            + + A+ K H+P+ +  A  ++     E                                
Sbjct: 1298 ALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDITIKRKNNEATNVEN 1357

Query: 805  -------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                      +  +   +     +     ++F++  + +     A++G+G   A+ I++A
Sbjct: 1358 DLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPFIALEGLGENVAKQIVKA 1417

Query: 857  SADKPFDSLEDFCSR 871
              +  F S  +   R
Sbjct: 1418 RQEGEFLSKMELRKR 1432



 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 38/90 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  AGI+ I 
Sbjct: 341 VELHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARKAGIKAIF 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         +           +V 
Sbjct: 401 GLEANIVEDKVPISYDPVDMDLHEATYVVF 430


>gi|222152446|ref|YP_002561621.1| DNA polymerase III PolC [Streptococcus uberis 0140J]
 gi|222113257|emb|CAR40776.1| DNA polymerase III PolC-type [Streptococcus uberis 0140J]
          Length = 1465

 Score =  185 bits (469), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 138/973 (14%), Positives = 304/973 (31%), Gaps = 196/973 (20%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F ++A    G+       L   +  N+K+  +       +    + V    G + + +LV
Sbjct: 586  FLKEAREKHGV-----TDL---LDLNIKLVAEDSYKKARIKHATIYVQNQTGLKNIFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S   +    +   RI  + L +   +GL++ +  S G +  A      + A +    +  
Sbjct: 638  SLSNVK-YFEGVPRIPRTVLDQY-RDGLLLGSACSEGEVFDAVLTKGVEAATEVAKYYDF 695

Query: 175  KKLFGDRLY---V--NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    +Y   +   L + +   +     ++++      P++AT N  ++  ED    +
Sbjct: 696  IEIMPPAIYQPLIAKELIKDQEGVQQTILDLIEVGRRLNKPVIATGNVHYIEPEDEIYRE 755

Query: 230  V---------LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            +         ++        + +  P         N       F     A +  V+ ++ 
Sbjct: 756  IIVRSLGQGAMINRPIGRGEAAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVQNSQD 815

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             + +++    +         +  ++        KA            I           R
Sbjct: 816  FADLIEEVEVVKGDLYTPFIEKAEETVAELTYQKAFE----------IYGNPLPDIIDLR 865

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            ++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++P+  
Sbjct: 866  IEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPP 924

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL  D   +PD D
Sbjct: 925  HYVCPNCQHSEFITDGSVGSGYDLPNKNCPQCGSPYQKDGQDIPFETFLGFDGDKVPDID 984

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R  +  
Sbjct: 985  LNFSGDDQPNAHLDVRDIFGEEYAFRAGTVGTVAEKTAYGFV-KGFERDYGKYYRDAE-- 1041

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDR 537
                                           +  ++    G+ R    H  GIV      
Sbjct: 1042 -------------------------------VDRLAAGAAGVKRTTGQHPGGIVVIPNYM 1070

Query: 538  PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+             T FN   I++  ++K D LG    T+++K      Q   
Sbjct: 1071 DVYDFTPVQYPAEDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQDLS 1124

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +D   IP DD     L +    LG+   Q+ +      +     + +  ++       P
Sbjct: 1125 GIDPKSIPADDPGVMALFSGTDILGVTPEQIGTPTGMLGIPEFGTNFVRGMVNET---HP 1181

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                 ++  +   +G +  +     +      T   +I     + +  + +G     A  
Sbjct: 1182 TTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFT 1241

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K +  ++ + +      A +        +     +     Y F K+HAAAY ++
Sbjct: 1242 IMERVRKGMWLKISEDERNSYIQAMRENNVPDWYIESCGKI----KYMFPKAHAAAYVLM 1297

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---------------------------- 804
            + + A+ K H+P+ +  A  ++     E                                
Sbjct: 1298 ALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKSRMEEIALKKKNNEASNVEN 1357

Query: 805  -------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                      +  +   +     +     ++F++  + +     A++G+G   A+ I++A
Sbjct: 1358 DLYTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIEGDTLIPPFVALEGLGENVAKQIVKA 1417

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
              D  F S  +   R      ++ ++E       +D  G      L +L           
Sbjct: 1418 RQDGEFLSKMELRKR---GGASQTLVEK------MDDMGI-----LGNLPE--------- 1454

Query: 917  KNRTNKHENIFAH 929
                +   ++F  
Sbjct: 1455 ----DNQLSLFDD 1463



 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++   ++  ++D  A    PAIAITD  N+ S      +A  AGI+ I 
Sbjct: 341 VELHAHTNMSTMDALPTVETLIDTAAKWGHPAIAITDHANVQSFPHGYHRARKAGIKAIF 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I                     +V 
Sbjct: 401 GLEANIVEDKVPISYQPVSMDLHEATYVVF 430


>gi|139474447|ref|YP_001129163.1| DNA polymerase III PolC [Streptococcus pyogenes str. Manfredo]
 gi|166217453|sp|A2RGI3|DPO3_STRPG RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|134272694|emb|CAM30965.1| DNA polymerase III PolC-type [Streptococcus pyogenes str. Manfredo]
          Length = 1465

 Score =  185 bits (469), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 135/915 (14%), Positives = 283/915 (30%), Gaps = 169/915 (18%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+       ++ +Q N  +  +       +    + V    G + + +LV
Sbjct: 586  FLRDAREKHGIK-------NL-LQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDF 695

Query: 175  KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    +Y       L + +         ++++      P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKPVLATGNVHYLEPEEEIYRE 755

Query: 230  V---------LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            +         ++          +  P         N       F     A +  VE  + 
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVENTQD 815

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +  ++    +         D  ++        KA            I           R
Sbjct: 816  FADRIEEVEVVKGDLYTPYIDKAEETVAELTYQKAFE----------IYGNPLPDIIDLR 865

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            ++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++P+  
Sbjct: 866  IEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPP 924

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL  D   +PD D
Sbjct: 925  HYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKVPDID 984

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R  +  
Sbjct: 985  LNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYRDAE-- 1041

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDR 537
                                           +  ++    G+ R    H  GIV      
Sbjct: 1042 -------------------------------VDRLAAGAAGVKRTTGQHPGGIVVIPNYM 1070

Query: 538  PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+             T FN   I++  ++K D LG    T+++K      Q   
Sbjct: 1071 DVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQDLS 1124

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +D   IP DD     L +    LG+   Q+ +      +     + +  ++       P
Sbjct: 1125 GIDPITIPADDPGVMALFSGTEILGVTPEQIGTPTGMLGIPEFGTNFVRGMVNET---HP 1181

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                 ++  +   +G +  +     +      T   +I     + +  + +G     A  
Sbjct: 1182 TTFAELLQLSGLSHGTDVWLGNAQDLIKEGVATLKTVIGCRDDIMVYLMHAGLEPKMAFT 1241

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K +  ++ +++      A +        +     +     Y F K+HAAAY ++
Sbjct: 1242 IMERVRKGLWLKISEEERNGYIDAMRENNVPDWYIESCGKI----KYMFPKAHAAAYVLM 1297

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---------------------------- 804
            + + A+ K H+P+ +  A  ++     E                                
Sbjct: 1298 ALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSDGLDAVKARMEDITIKRKNNEATNVEN 1357

Query: 805  -------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                      +  +   +     +     ++F++  + +     A++G+G   A+ I++A
Sbjct: 1358 DLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPFIALEGLGENVAKQIVKA 1417

Query: 857  SADKPFDSLEDFCSR 871
              +  F S  +   R
Sbjct: 1418 RQEGEFLSKMELRKR 1432



 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 38/90 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  AGI+ I 
Sbjct: 341 VELHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARKAGIKAIF 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         +           +V 
Sbjct: 401 GLEANIVEDKAPISYDPVDMDLHEATYVVF 430


>gi|322388734|ref|ZP_08062331.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779]
 gi|321140353|gb|EFX35861.1| DNA polymerase III PolC [Streptococcus infantis ATCC 700779]
          Length = 1464

 Score =  184 bits (468), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 137/955 (14%), Positives = 289/955 (30%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            NL + +        V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 602  NLDLISPDSYKKARVKHATIYVKNQVGLKNIFKLVSLSNTQ-YFEGVPRIPRTVL-DAHR 659

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  + G +  A        A +    +        ++ +               
Sbjct: 660  EGLILGSACTEGEVFDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 712

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  ED    ++         ++      
Sbjct: 713  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEDEIYREIIVRSLGQGAMINRTIGH 772

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
              + +  P         N       F     A +  +E     + I +    +       
Sbjct: 773  GEAAQPAPLPKAHFRTTNEMLDEFAFLGEDLARKIVIENTNALAEIFEPVEVVKGDLYTP 832

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 833  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 882

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 883  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 941

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 942  GSGFDMPNKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1001

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y ++ R  +                    
Sbjct: 1002 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKLYREAE-------------------- 1040

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1041 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1087

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1088 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNDIPMDDPGVMDLF 1141

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +S     +     + +  ++       P     ++  +   +G + 
Sbjct: 1142 SGTDILGVTPDQIGTSTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1198

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1199 WLGNAQDLIKAGIADLSTVIGCRDDIMVYLMHAGLDPKMAFTIMERVRKGLWLKISEEER 1258

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1259 NGYIEAMKANNVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1314

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1315 YFSIRAKAFDIKTMGAGLDAIKRKMQEIAEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1374

Query: 816  IMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +     ++F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1375 FGKLDLYRSDAIEFIIDGDTLIPPFVAMDGLGENVAKQLVRARQEGEFLSKTELRKR--- 1431

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1432 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDD 1462



 Score = 91.0 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     ++AITD  N+ S     + A  
Sbjct: 333 MPEGERRVEFHAHTNMSTMDALPEVEEIVGTAAKWGHKSVAITDHGNVQSFPHGYKAAKK 392

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 393 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 429


>gi|306826600|ref|ZP_07459906.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782]
 gi|304431208|gb|EFM34211.1| DNA polymerase III PolC [Streptococcus pyogenes ATCC 10782]
          Length = 1465

 Score =  184 bits (468), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 135/915 (14%), Positives = 282/915 (30%), Gaps = 169/915 (18%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+       ++ +Q N  +  +       +    + V    G + + +LV
Sbjct: 586  FLRDAREKHGIK-------NL-LQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S   +    +   RI  + L +   EGL + T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLFLGTACSDGEVFDAVLTKGIDAAVDLAKYYDF 695

Query: 175  KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    +Y       L + +         ++++      P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKPVLATGNVHYLEPEEEIYRE 755

Query: 230  V---------LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            +         ++          +  P         N       F     A +  VE  + 
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVENTQD 815

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +  ++    +         D  ++        KA            I           R
Sbjct: 816  FADRIEEVEVVKGDLYTPYIDKAEETVAELTYQKAFE----------IYGNPLPDIIDLR 865

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            ++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++P+  
Sbjct: 866  IEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPP 924

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL  D   +PD D
Sbjct: 925  HYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKVPDID 984

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R  +  
Sbjct: 985  LNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYRDAE-- 1041

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDR 537
                                           +  ++    G+ R    H  GIV      
Sbjct: 1042 -------------------------------VDRLAAGAAGVKRTTGQHPGGIVVIPNYM 1070

Query: 538  PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+             T FN   I++  ++K D LG    T+++K      Q   
Sbjct: 1071 DVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQDLS 1124

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +D   IP DD     L +    LG+   Q+ +      +     + +  ++       P
Sbjct: 1125 GIDPITIPADDPGVMALFSGTEILGVTPEQIGTPTGMLGIPEFGTNFVRGMVNET---HP 1181

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                 ++  +   +G +  +     +      T   +I     + +  + +G     A  
Sbjct: 1182 TTFAELLQLSGLSHGTDVWLGNAQDLIKEGVATLKTVIGCRDDIMVYLMHAGLEPKMAFT 1241

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K +  ++ +++      A +        +     +     Y F K+HAAAY ++
Sbjct: 1242 IMERVRKGLWLKISEEERNGYIDAMRENNVPDWYIESCGKI----KYMFPKAHAAAYVLM 1297

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---------------------------- 804
            + + A+ K H+P+ +  A  ++     E                                
Sbjct: 1298 ALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDITIKRKNNEATNVEN 1357

Query: 805  -------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                      +  +   +     +     ++F++  + +     A++G+G   A+ I++A
Sbjct: 1358 DLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPFIALEGLGENVAKQIVKA 1417

Query: 857  SADKPFDSLEDFCSR 871
              +  F S  +   R
Sbjct: 1418 RQEGEFLSKMELRKR 1432



 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 38/90 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  AGI+ I 
Sbjct: 341 VELHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARKAGIKAIF 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         +           +V 
Sbjct: 401 GLEANIVEDKVPISYDPVDMDLHEATYVVF 430


>gi|319939893|ref|ZP_08014248.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV]
 gi|319810904|gb|EFW07223.1| DNA polymerase III polC-type [Streptococcus anginosus 1_2_62CV]
          Length = 1464

 Score =  184 bits (468), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 130/889 (14%), Positives = 279/889 (31%), Gaps = 158/889 (17%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 602  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 659

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY--------- 192
            EGLI+ T  S G +  A        A +    +        ++ +     Y         
Sbjct: 660  EGLILGTACSEGEVFDAVVSQGVDAAVEVAKYYD-------FIEIMPPAIYAPLIAKEQV 712

Query: 193  ---DRYR--ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRP 246
               +        ++++    + P++AT +  ++  E+    ++++ ++    ++++    
Sbjct: 713  KDVEELHTIIKNLIEVGNRLDKPVLATGDVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 772

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                      ++   +    L E      E+AR+               IE    D+   
Sbjct: 773  GENAQPAPLPKAHFRTTNEMLDEFAFLGEELARQVVIDNPNQLAATFESIEVVKGDLYTP 832

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
              ++   K       +  +  I          +R++ EL  I    F+  +L     +Q 
Sbjct: 833  FIDKSEEKVAEMTYAKAFE--IYGNPLPDIVDRRIERELTSILGNGFAVIYLASQMLVQR 890

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            + +    VG  RGS   S  A  + IT+++PL                            
Sbjct: 891  SNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSYGSGFDMPD 949

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL  D   +PD D++F  + +      V++ +G E   +
Sbjct: 950  KDCPHCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFR 1009

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++ AK A   V                       +         D+         
Sbjct: 1010 AGTVGTVAAKTAYGFVK---------------------GYERDYNKFYRDAEVERL---- 1044

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNM 560
                     +Q   G+ R    H  GIV       +    P+         +   T FN 
Sbjct: 1045 ---------AQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDLTAEWQTTHFNF 1095

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
              I++  ++K D LG    T+++K      Q    +D + IP DD E   L +    LG+
Sbjct: 1096 HDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNEIPMDDQEVMALFSGTDVLGV 1149

Query: 621  FQ--LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
             Q  + +      +     + +  ++       P     ++  +   +G +  +     +
Sbjct: 1150 TQEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDVWLGNAQDL 1206

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
                      +I     + +  +  G     +  +   + K +  ++  ++      A K
Sbjct: 1207 IKQGIADLSTVIGCRDDIMVYLMHKGLEPKMSFTIMERVRKGMWLKISDEERNGYIAAMK 1266

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
                    +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A  ++    
Sbjct: 1267 ENNVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIRAKA 1322

Query: 799  VEKIKK-----------------------------------FCQDARQFNIQIMPPSVNT 823
             +                                          +  +   +    ++  
Sbjct: 1323 FDIKVMSSGLDAVKRKMNEISEKRKNNEASNVEIDLYTTLEIVNEMLERGFKFGKLNLYK 1382

Query: 824  PCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                +F +  + +    +A+ G+G   A+ +++A A+  F S  +   R
Sbjct: 1383 SDATEFLIDGDSLIPPFSAMDGLGDNVAKQLVKARAEGEFLSKTELRKR 1431



 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           +    H++ S ++    +  ++   A     A+AITD  N+ S     + A  AGIQ I 
Sbjct: 340 IEFHAHTNMSTMDALPEVEELIATAAKWGHKAVAITDHGNVQSFPHGYKAAKKAGIQLIY 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 400 GMEANIVEDRVPITYNEVDMELKEATYVVF 429


>gi|71904322|ref|YP_281125.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS6180]
 gi|123747742|sp|Q48R90|DPO3_STRPM RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|71803417|gb|AAX72770.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS6180]
          Length = 1465

 Score =  184 bits (468), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 135/915 (14%), Positives = 283/915 (30%), Gaps = 169/915 (18%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+       ++ +Q N  +  +       +    + V    G + + +LV
Sbjct: 586  FLRDAREKHGIK-------NL-LQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDF 695

Query: 175  KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    +Y       L + +         ++++      P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKPVLATGNVHYLEPEEEIYRE 755

Query: 230  V---------LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            +         ++          +  P         N       F     A +  VE  + 
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVENTQD 815

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +  ++    +         D  ++        KA            I           R
Sbjct: 816  FADRIEEVEVVKGDLYTPYIDKAEETVAELTYQKAFE----------IYGNPLPDIIDLR 865

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            ++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++P+  
Sbjct: 866  IEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPP 924

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL  D   +PD D
Sbjct: 925  HYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKVPDID 984

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R  +  
Sbjct: 985  LNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYRDAE-- 1041

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDR 537
                                           +  ++    G+ R    H  GIV      
Sbjct: 1042 -------------------------------VDRLAAGAAGVKRTTGQHPGGIVVIPNYM 1070

Query: 538  PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+             T FN   I++  ++K D LG    T+++K      Q   
Sbjct: 1071 DVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQDLS 1124

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +D   IP DD     L +    LG+   Q+ +      +     + +  ++       P
Sbjct: 1125 GIDPITIPADDPGVMALFSGTEILGVTPEQIGTPTGMLGIPEFGTNFVRGMVNET---HP 1181

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                 ++  +   +G +  +     +      T   +I     + +  + +G     A  
Sbjct: 1182 TTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFT 1241

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K +  ++ +++      A +        +     +     Y F K+HAAAY ++
Sbjct: 1242 IMERVRKGLWLKISEEERNGYIDAMRENNVPDWYIESCGKI----KYMFPKAHAAAYVLM 1297

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---------------------------- 804
            + + A+ K H+P+ +  A  ++     E                                
Sbjct: 1298 ALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDITIKRKNNEATNVEN 1357

Query: 805  -------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                      +  +   +     +     ++F++  + +     A++G+G   A+ I++A
Sbjct: 1358 DLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPFIALEGLGENVAKQIVKA 1417

Query: 857  SADKPFDSLEDFCSR 871
              +  F S  +   R
Sbjct: 1418 RQEGEFLSKMELRKR 1432



 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 38/90 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  AGI+ I 
Sbjct: 341 VELHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARKAGIKAIF 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         +           +V 
Sbjct: 401 GLEANIVEDKVPISYDPVDMDLHEATYVVF 430


>gi|322386941|ref|ZP_08060565.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100]
 gi|321269223|gb|EFX52159.1| DNA polymerase III PolC [Streptococcus cristatus ATCC 51100]
          Length = 1462

 Score =  184 bits (468), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 134/955 (14%), Positives = 286/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-------- 193
            EGLI+ +  S G +  A        A +    +        ++ +     Y+        
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYEPLIAKEQI 710

Query: 194  ------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 711  KDQEELQTIIRNLIEVGERLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 770

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
              + +  P         N       F     A +  +    + +   +    +       
Sbjct: 771  GENAQPAPLPKAHFRTTNEMLDEFAFLGEDLAKKLVITNPNQLAETFEPVEVVKGDLYTP 830

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 831  FIDKAEETVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 880

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 881  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSY 939

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 940  GSGFDMPDKNCPECGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 999

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1000 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1038

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1039 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1085

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1086 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNDIPMDDAGVMALF 1139

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1140 SGTDILGVTEEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1196

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  +  G     A  +   + K +  ++ +++ 
Sbjct: 1197 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGLDPKMAFTIMERVRKGLWLKISEEER 1256

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1257 NGYIAAMKENNVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1312

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1313 YFSIRAKAFDIKTMSGGLDAVKRRMSEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFK 1372

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +    + + G+G   AR ++ A  +  F S  +   R   
Sbjct: 1373 FGKLDLYKSHATEFLIEGDTLIPPFSTMDGLGDNVARQLVRAREEGEFLSKTELRKR--- 1429

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1430 GGLSSTLVEK------MDDMGI-----LGNMPE-------------DNQLSLFDE 1460



 Score = 91.8 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++    +  I+   A     A+AITD +N+ S     + A  AGIQ I 
Sbjct: 338 VEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHSNVQSFPHGYKAAKKAGIQLIY 397

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I       + N+          +V 
Sbjct: 398 GMEANIVEDRVPIVYNEVDMELSDATYVVF 427


>gi|163783833|ref|ZP_02178814.1| branched-chain alpha-keto acid dehydrogenase E2 subunit
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880904|gb|EDP74427.1| branched-chain alpha-keto acid dehydrogenase E2 subunit
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 352

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 159/349 (45%), Positives = 227/349 (65%), Gaps = 7/349 (2%)

Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRF 400
           + +E+++I +M F  YFLIV DFI+ AK+N IPVGPGRGS AGS+ AY L ITD++PL+ 
Sbjct: 1   MKYEIDIIKQMGFPEYFLIVQDFIKHAKENGIPVGPGRGSAAGSLVAYTLGITDVNPLQH 60

Query: 401 SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
            L+FERFLNPDR+SMPD DIDFC + R ++I YV+NKYG + VAQIIT+  +++K  +RD
Sbjct: 61  GLIFERFLNPDRISMPDIDIDFCMENRPKIIEYVRNKYGEQAVAQIITYNFMKSKMVIRD 120

Query: 461 VGRALQMPYSQVDRLCKLIPNDPAHPVS---LQAIADDSRFREARLADPSVDRLLEISQK 517
           V R L  PYS+ D++ K+I   P    +    + +  +  FR+    D  V +LL++++K
Sbjct: 121 VARVLGFPYSEADKIAKMILPGPVQGSTLTIEENLEANPEFRKLYETDERVRKLLDLAKK 180

Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLK 577
           LEG  RH   HAAGIVI   PL + VP+Y D +     TQF+M  +E  GL+K DFLGLK
Sbjct: 181 LEGSARHTGIHAAGIVIAPGPLDEYVPVYVD-KDGTKATQFDMSTLEMLGLVKMDFLGLK 239

Query: 578 TLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
           TLT L      + +R     +   + FDD   Y LL +  T G+FQLES GM+  L  ++
Sbjct: 240 TLTELDYMRKLIKERHGIDLNFLELGFDDPNVYKLLQSGKTTGVFQLESKGMQNLLAKLK 299

Query: 637 PDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVSIHPLIDPMLK 683
           PD  ++IIA+++L+RPGP+ + +V  Y  RK+G++K+      +  +LK
Sbjct: 300 PDKFDEIIAILALFRPGPLMSGMVDEYIERKHGRKKVEYPFEEVKDVLK 348


>gi|149011144|ref|ZP_01832449.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP19-BS75]
 gi|147764780|gb|EDK71710.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP19-BS75]
          Length = 1463

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 284/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +           A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FVDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNKIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYCSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|225858122|ref|YP_002739632.1| DNA polymerase III PolC [Streptococcus pneumoniae 70585]
 gi|225720766|gb|ACO16620.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae 70585]
          Length = 1463

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 284/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +           A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNKIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIVDLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYCSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 94.5 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEAIYVVF 428


>gi|237649657|ref|ZP_04523909.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974]
 gi|237821357|ref|ZP_04597202.1| DNA polymerase III PolC [Streptococcus pneumoniae CCRI 1974M2]
          Length = 1463

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 284/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +           A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNKIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYCSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|168485959|ref|ZP_02710467.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae CDC1087-00]
 gi|183570911|gb|EDT91439.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae CDC1087-00]
          Length = 1463

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 284/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +           A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNKIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYCSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|327468385|gb|EGF13870.1| DNA polymerase III PolC [Streptococcus sanguinis SK330]
          Length = 1462

 Score =  184 bits (467), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 135/955 (14%), Positives = 288/955 (30%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-------- 193
            EGLI+ +  S G +  A        A +    +        ++ +     Y+        
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYEPLIAKEQI 710

Query: 194  ------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 711  KDQEELQTIIRNLIEVGDRLCKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 770

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
              + +  P         N       F     A +  +    + +   +    +       
Sbjct: 771  GENAQPAPLPKAHFRTTNEMLDEFTFLGEDLAKKLVITNPNQLAETFEPVEVVKGDLYTP 830

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 831  FIDKAEETVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 880

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 881  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSY 939

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 940  GSGFDMSDKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 999

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1000 FGSEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1038

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1039 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1085

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1086 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNDIPMDDTGVMALF 1139

Query: 613  TTKGTLGIFQ--LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+ Q  + +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1140 SGTDILGVTQEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1196

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  +  G     A  +   + K +  ++ +++ 
Sbjct: 1197 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGLDPKMAFTIMERVRKGLWLKISEEER 1256

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1257 NGYIAAMKENNVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1312

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1313 YFSIRAKAFDIKTMSGGLDAVKRRMNEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFK 1372

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F + ++ +    +A+ G+G   AR ++ A  +  F S  +   R   
Sbjct: 1373 FGKLDLYKSHATEFLIEEDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR--- 1429

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1430 GGLSSTLVEK------MDDMGI-----LGNMPE-------------DNQLSLFDE 1460



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  AGIQ I 
Sbjct: 338 VEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKKAGIQLIY 397

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I       + N+          +V 
Sbjct: 398 GMEANIVEDRVPIVYNEVDMELSDATYVVF 427


>gi|21911223|ref|NP_665491.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS315]
 gi|28896601|ref|NP_802951.1| DNA polymerase III PolC [Streptococcus pyogenes SSI-1]
 gi|25452927|sp|Q8K5S8|DPO3_STRP3 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|21905436|gb|AAM80294.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes
            MGAS315]
 gi|28811855|dbj|BAC64784.1| putative DNA polymerase III alpha subunit [Streptococcus pyogenes
            SSI-1]
          Length = 1465

 Score =  184 bits (467), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 135/915 (14%), Positives = 284/915 (31%), Gaps = 169/915 (18%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+       ++ +Q N  +  +       +    + V    G + + +LV
Sbjct: 586  FLKDAREKHGIK-------NL-LQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDF 695

Query: 175  KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    +Y       L + +         ++++    + P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYRE 755

Query: 230  V---------LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            +         ++          +  P         N       F     A +  VE  + 
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVENTQD 815

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +  ++    +         D  ++        KA            I           R
Sbjct: 816  FADRIEEVEVVKGDLYTPYIDKAEETVAELTYQKAFE----------IYGNPLPDIIDLR 865

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            ++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++P+  
Sbjct: 866  IEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPP 924

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL  D   +PD D
Sbjct: 925  HYVCPSCQHSEFITDGSVGSGYDLPNKACPKCGTPYQKDGQDIPFETFLGFDGDKVPDID 984

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R  +  
Sbjct: 985  LNFSGDDQPSAHLDVRDIFGAEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYRDAE-- 1041

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDR 537
                                           +  ++    G+ R    H  GIV      
Sbjct: 1042 -------------------------------VDRLAAGAAGVKRTTGQHPGGIVVIPNYM 1070

Query: 538  PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+             T FN   I++  ++K D LG    T+++K      Q   
Sbjct: 1071 DVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQDLS 1124

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +D   IP DD     L +    LG+   Q+ +      +     + +  ++       P
Sbjct: 1125 GIDPITIPADDPGVMALFSGTEVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVNET---HP 1181

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                 ++  +   +G +  +     +      T   +I     + +  + +G     A  
Sbjct: 1182 TTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFT 1241

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K +  ++ +++      A +        +     +     Y F K+HAAAY ++
Sbjct: 1242 IMERVRKGLWLKISEEERNGYIDAMRENNVPDWYIESCGKI----KYMFPKAHAAAYVLM 1297

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---------------------------- 804
            + + A+ K H+P+ +  A  ++     E                                
Sbjct: 1298 ALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDITIKRKNNEATNVEN 1357

Query: 805  -------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                      +  +   +     +     ++F++  + +     A++G+G   A+ I++A
Sbjct: 1358 DLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPFIALEGLGENVAKQIVKA 1417

Query: 857  SADKPFDSLEDFCSR 871
              +  F S  +   R
Sbjct: 1418 RQEGEFLSKMELRKR 1432



 Score = 90.2 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++  L++ +++D  A     A+AITD  N+ S      +A  AGI+ I 
Sbjct: 341 VELHAHTNMSTMDALLTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARKAGIKAIF 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         +           +V 
Sbjct: 401 GLEANIVEDKVPISYDPVDMDLHEATYVVF 430


>gi|50915026|ref|YP_060998.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10394]
 gi|73919253|sp|Q5X9U8|DPO3_STRP6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|50904100|gb|AAT87815.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10394]
          Length = 1465

 Score =  184 bits (467), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 134/915 (14%), Positives = 283/915 (30%), Gaps = 169/915 (18%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+       ++ +Q N  +  +       +    + V    G + + +LV
Sbjct: 586  FLKDAREKHGIK-------NL-LQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGIPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDF 695

Query: 175  KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    +Y       L + +         ++++      P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKPVLATGNVHYLEPEEEIYRE 755

Query: 230  V---------LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            +         ++          +  P         N       F     A +  VE  + 
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVENTQD 815

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +  ++    +         D  ++        KA            I           R
Sbjct: 816  FADRIEEVEVVKGDLYTPYIDKAEETVAELTYQKAFE----------IYGNPLPDIIDLR 865

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            ++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++P+  
Sbjct: 866  IEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPP 924

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL  D   +PD D
Sbjct: 925  HYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKVPDID 984

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R  +  
Sbjct: 985  LNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYRDAE-- 1041

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDR 537
                                           +  ++    G+ R    H  GI  +    
Sbjct: 1042 -------------------------------VERLAAGAAGVKRTTGQHPGGIVVIPNYM 1070

Query: 538  PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+             T FN   I++  ++K D LG    T+++K      Q   
Sbjct: 1071 DVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQDLS 1124

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +D   IP DD     L +    LG+   Q+ +      +     + +  ++       P
Sbjct: 1125 GIDPITIPADDPGVMALFSGTEVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVNET---HP 1181

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                 ++  +   +G +  +     +      T   +I     + +  + +G     A  
Sbjct: 1182 TTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFT 1241

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K +  ++ +++      A +        +     +     Y F K+HAAAY ++
Sbjct: 1242 IMERVRKGLWLKISEEERNGYIDAMRENNVPDWYIESCGKI----KYMFPKAHAAAYVLM 1297

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---------------------------- 804
            + + A+ K H+P+ +  A  ++     E                                
Sbjct: 1298 ALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDITIKRKNNEATNVEN 1357

Query: 805  -------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                      +  +   +     +     ++F++  + +     A++G+G   A+ I++A
Sbjct: 1358 DLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPFIALEGLGENVAKQIVKA 1417

Query: 857  SADKPFDSLEDFCSR 871
              +  F S  +   R
Sbjct: 1418 RQEGEFLSKMELRKR 1432



 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  AGI+ I 
Sbjct: 341 VEFHAHTNMSTMDALPTVESLIDMAAKWGHKAVAITDHANVQSFPHGYHRARKAGIKAIF 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         +           +V 
Sbjct: 401 GLEANIVEDKVPISYDPVDMDLHEATYVVF 430


>gi|15900208|ref|NP_344812.1| DNA polymerase III PolC [Streptococcus pneumoniae TIGR4]
 gi|111658314|ref|ZP_01409003.1| hypothetical protein SpneT_02000504 [Streptococcus pneumoniae TIGR4]
 gi|21263563|sp|Q97SQ2|DPO3_STRPN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|14971745|gb|AAK74452.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae TIGR4]
          Length = 1463

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 284/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +           A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFESVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNKIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYCSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|306830212|ref|ZP_07463396.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249]
 gi|304427738|gb|EFM30834.1| DNA polymerase III PolC [Streptococcus mitis ATCC 6249]
          Length = 1463

 Score =  184 bits (466), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 287/955 (30%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +  A      + A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDAVVSQGVEAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  ++     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELAHKLVIDNPNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPNKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGSEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNEIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ ++     +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTATGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLDAIKRRMEEIAEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSDATEFIIDGDTLIPPFVAMDGLGENVAKQLVRARQEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|148983680|ref|ZP_01816999.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP3-BS71]
 gi|147923827|gb|EDK74939.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP3-BS71]
 gi|301799415|emb|CBW31952.1| DNA polymerase III PolC-type [Streptococcus pneumoniae OXC141]
          Length = 1463

 Score =  184 bits (466), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 284/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +           A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNKIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NDYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYCSQTTEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|255018386|ref|ZP_05290512.1| hypothetical protein LmonF_13006 [Listeria monocytogenes FSL
           F2-515]
          Length = 161

 Score =  184 bits (466), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 14/169 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHLQV S+Y LL    S++ ++ K      PA+AITD N L+  +EF QK  AA I+PI
Sbjct: 3   FVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVLYGVVEFYQKCLAADIKPI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           IG  + I          QG         ++L+  +  GY +L+++ S +   ++G     
Sbjct: 63  IGMTVTI----------QGYLNPINSYELILIAESTAGYHQLLKIASAIQTREEG---PE 109

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
           +  SWL+   ++ LI+++ G+ G I+R       + A +      ++FG
Sbjct: 110 LPQSWLRAYSSD-LIVISPGAKGEIERLLMEEDREGALEVYANLVEIFG 157


>gi|315611914|ref|ZP_07886833.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296]
 gi|315316092|gb|EFU64125.1| DNA polymerase III PolC [Streptococcus sanguinis ATCC 49296]
          Length = 1463

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 284/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +  A        A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDAVVSQGVDAAVEVAEYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++       ++AT N  ++  E+    ++         ++      
Sbjct: 712  KDLEELQTIIKSLIEVGDRLGKHVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPNKDCPKCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNEIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLDAIKRRMEEIAEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSDATEFIIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDD 1461



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVAIAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|323126468|gb|ADX23765.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
            equisimilis ATCC 12394]
          Length = 1465

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 134/915 (14%), Positives = 283/915 (30%), Gaps = 169/915 (18%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+       ++ +Q N  +  +       +    + V    G + + +LV
Sbjct: 586  FLRDAREKHGIK-------NL-LQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLARYYDF 695

Query: 175  KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    +Y       L + +         ++++    + P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYRE 755

Query: 230  V---------LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            +         ++          +  P         N       F     A +  V+  + 
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVQNTQD 815

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +  ++    +         D  ++        KA            I           R
Sbjct: 816  MADRIEEVEVVKGDLYTPYIDKAEETVAELTYQKAFE----------IYGNPLPDIIDLR 865

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            ++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++P+  
Sbjct: 866  IEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPP 924

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL  D   +PD D
Sbjct: 925  HYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKVPDID 984

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R  +  
Sbjct: 985  LNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYRDAE-- 1041

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDR 537
                                           +  ++    G+ R    H  GIV      
Sbjct: 1042 -------------------------------VDRLAAGAAGVKRTTGQHPGGIVVIPNYM 1070

Query: 538  PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+             T FN   I++  ++K D LG    T+++K      Q   
Sbjct: 1071 DVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQDLS 1124

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +D   IP DD     L +    LG+   Q+ +      +     + +  ++       P
Sbjct: 1125 GIDPITIPADDPGVMALFSGTEVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVNET---HP 1181

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                 ++  +   +G +  +     +      T   +I     + +  + +G     A  
Sbjct: 1182 TTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLQPKMAFT 1241

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K +  ++ +++      A +        +     +     Y F K+HAAAY ++
Sbjct: 1242 IMERVRKGLWLKISEEERNGYIDAMRENNVPDWYIESCGKI----KYMFPKAHAAAYVLM 1297

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---------------------------- 804
            + + A+ K H+P+ +  A  ++     E                                
Sbjct: 1298 ALRVAYFKVHHPLMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDISIKRKNNEATNVEN 1357

Query: 805  -------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                      +  +   +     +      +F++  + +     A++G+G   A+ I++A
Sbjct: 1358 DLFTTLEIVNEMLERGFKFGKLDLYKSKATEFQIEGDTLIPPFVALEGLGENVAKQIVKA 1417

Query: 857  SADKPFDSLEDFCSR 871
              +  F S  +   R
Sbjct: 1418 RQEGEFLSKMELRKR 1432



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  AGI+ I 
Sbjct: 341 VEFHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARKAGIKAIF 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         +           +V 
Sbjct: 401 GLEANIVEDKVPISYDPVDMDLHEATYVVF 430


>gi|168490797|ref|ZP_02714940.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae CDC0288-04]
 gi|225853872|ref|YP_002735384.1| DNA polymerase III PolC [Streptococcus pneumoniae JJA]
 gi|183574875|gb|EDT95403.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae CDC0288-04]
 gi|225723163|gb|ACO19016.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae JJA]
          Length = 1463

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 284/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +           A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNKIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 94.9 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGIEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|325126001|gb|ADY85331.1| DNA polymerase III alpha chain [Lactobacillus delbrueckii subsp.
            bulgaricus 2038]
          Length = 1445

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 157/904 (17%), Positives = 292/904 (32%), Gaps = 194/904 (21%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            D+      +N           I +L    + G + L ELVS   +    K  +R   S L
Sbjct: 597  DLGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSLAGIKYNFKG-LRTPKSEL 655

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ--------- 187
            + +   GL+  +  S G +  A      + A+K+   +        ++ +Q         
Sbjct: 656  RRLHA-GLLYGSACSQGEVFIAMMQKGYEEAKKKAEFYD-------FLEIQPPSNYSSLI 707

Query: 188  -RHRGYDRYRESQVV----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
                  D  +  +++    +L      P+VAT+++ ++ + +    DVL+A         
Sbjct: 708  ADGLIADEAQLEEILTNIYKLGKELNKPVVATSDAHYIDKHEAIYRDVLLAAQRG----N 763

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             +R +  PD +     EM+  FS + E +   V I+        +   + P   E     
Sbjct: 764  PNRNKQHPDLHFYTTQEMLDEFSFMGEDIAKEVVISNPNKINAMIDEGVQPVQDESFPPK 823

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            I    E  +R                       + + RLD EL+ I    +   +LI   
Sbjct: 824  IPHTAER-VRKLTYDKAHELYGDPL------PDNIQARLDRELDAIIGNGYGVVYLISQM 876

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------- 399
             +  + K+   VG  RGS   S+ A  + IT+I+P+                        
Sbjct: 877  LVAKSVKDGYLVG-SRGSVGSSLVATMMGITEINPMPPHYRCPKCKQSEFFENGEYASGF 935

Query: 400  ------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
                               ++ FE FL      +PD D++F  D +     +++  +G  
Sbjct: 936  DLPDKKCPDCQVMMVKDGQNIPFETFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPN 995

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
               +  T G+L  K A+  V               +                        
Sbjct: 996  HSFKAGTVGTLADKKAIGYVKHYQDEHPEIKMNNAE------------------------ 1031

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVT 556
                     +  ++  + G+      H AGIV    D+ + +L P+         +   T
Sbjct: 1032 ---------VDRLAIGVTGVKATTGQHPAGIVVLPDDKDIYELTPLQYPSDDISKEWKTT 1082

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             F+   I    L+KFD LG +  T+++     + Q    +D   IP DD +   L ++  
Sbjct: 1083 HFDFHQIHD-NLLKFDILGHQDPTMIR-----MLQDLSGIDPLTIPTDDPKVMSLFSSPE 1136

Query: 617  --------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
                          TLG+ +  +  +R  LE  +P    +++ +  L             
Sbjct: 1137 ALGVTPEQINSKTGTLGLPEFGTPFVRGMLEETKPSTFAELLQISGLSHG-------TDV 1189

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
               N +E I +    +  ++     ++           +  G     A      + K   
Sbjct: 1190 WLGNAEELINNGTCKLKSVIGCRDNIMT--------DLIRWGVKEEVAFSTMETVRKGKG 1241

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
               +       +    +    +              Y F K+HAAAY +++ + AW K +
Sbjct: 1242 ISDENMAVLKENKNIPDWYIPSCLKI---------KYMFPKAHAAAYILMALRVAWFKVY 1292

Query: 783  YPVEFLAASMTLEMDNVE---------------------------------KIKKFCQDA 809
            YP  + AA  ++  D V+                                    +   +A
Sbjct: 1293 YPEIYYAAYFSVRADKVDLEAMSRGKNTVVALINRIKEKGTAATKLEKDLQTYMELVNEA 1352

Query: 810  RQFNIQIMPPSVNTPCVDFK--VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
             +  I      +N         V  + I     A+ G+G + A+ I+ A ++ PF S ED
Sbjct: 1353 IERGINFKMVDINESEATTYKIVDKHTILAPFNAVDGLGDSAAKQIVAARSEAPFLSKED 1412

Query: 868  FCSR 871
               R
Sbjct: 1413 LQVR 1416



 Score = 91.0 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 1   LTQYLEKSPSF------VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
           LT+++ +  ++      V L VH++ S L+    + +I+       QPA+AITD   L +
Sbjct: 323 LTEHVSRQEAYQGEEKHVELHVHTNMSQLDATSDVADIIKTAKKFGQPAVAITDHAGLQA 382

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
                +     G++ I+G + ++     L + N     +     ++ 
Sbjct: 383 LPNAFEAGKKTGMKVIMGLEANMVEDHGLLVLNPASMKYEDQEFVIF 429


>gi|298256053|ref|ZP_06979639.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada
            MDR_19A]
 gi|298502091|ref|YP_003724031.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|298237686|gb|ADI68817.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
          Length = 1463

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 284/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +           A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNKIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|71911485|ref|YP_283035.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS5005]
 gi|71854267|gb|AAZ52290.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS5005]
          Length = 1465

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 134/915 (14%), Positives = 284/915 (31%), Gaps = 169/915 (18%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+       ++ +Q N  +  +       +    + V    G + + +LV
Sbjct: 586  FLKDAREKHGIK-------NL-LQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLARYYDF 695

Query: 175  KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    +Y       L + +         ++++    + P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYRE 755

Query: 230  V---------LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            +         ++          +  P         N       F     A +  V+  + 
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVQNTQD 815

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +  ++    +         D  ++        KA            I           R
Sbjct: 816  FADRIEEVEVVKGDLYTPYIDKAEETVAELTYQKAFE----------IYGNPLPDIIDLR 865

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            ++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++P+  
Sbjct: 866  IEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPP 924

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL  D   +PD D
Sbjct: 925  HYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKVPDID 984

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R  +  
Sbjct: 985  LNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYRDAE-- 1041

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDR 537
                                           +  ++    G+ R    H  GIV      
Sbjct: 1042 -------------------------------VDRLAAGAAGVKRTTGQHPGGIVVIPNYM 1070

Query: 538  PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+             T FN   I++  ++K D LG    T+++K      Q   
Sbjct: 1071 DVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQDLS 1124

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +D   IP DD     L +    LG+   Q+ +      +     + +  ++       P
Sbjct: 1125 GIDPITIPADDPGVMALFSGTEVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVNET---HP 1181

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                 ++  +   +G +  +     +      T   +I     + +  + +G     A  
Sbjct: 1182 TTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFT 1241

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K +  ++ +++      A +        +     +     Y F K+HAAAY ++
Sbjct: 1242 IMERVRKGLWLKISEEERNGYIDAMRENNVPDWYIESCGKI----KYMFPKAHAAAYVLM 1297

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---------------------------- 804
            + + A+ K H+P+ +  A  ++     E                                
Sbjct: 1298 ALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDITIKRKNNEATNVEN 1357

Query: 805  -------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                      +  +   +     +     ++F++  + +     A++G+G   A+ I++A
Sbjct: 1358 DLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPFIALEGLGENVAKQIVKA 1417

Query: 857  SADKPFDSLEDFCSR 871
              +  F S  +   R
Sbjct: 1418 RQEGEFLSKMELRKR 1432



 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++   ++ +++D  A     AIAITD  N+ S      +A  AGI+ I 
Sbjct: 341 VELHAHTNMSTMDALPTVESLIDTAAKWGHKAIAITDHANVQSFPHGYHRARKAGIKAIF 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I                     +V 
Sbjct: 401 GLEANIVEDKVPISYEPVDMDLHEATYVVF 430


>gi|301793541|emb|CBW35916.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV104]
          Length = 1463

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 284/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +           A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNEIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NDYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|251781676|ref|YP_002995978.1| DNA polymerase III PolC [Streptococcus dysgalactiae subsp.
            equisimilis GGS_124]
 gi|242390305|dbj|BAH80764.1| DNA polymerase III subunit alpha [Streptococcus dysgalactiae subsp.
            equisimilis GGS_124]
          Length = 1465

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 134/915 (14%), Positives = 283/915 (30%), Gaps = 169/915 (18%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+       ++ +Q N  +  +       +    + V    G + + +LV
Sbjct: 586  FLRDAREKHGIK-------NL-LQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLARYYDF 695

Query: 175  KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    +Y       L + +         ++++    + P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYRE 755

Query: 230  V---------LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            +         ++          +  P         N       F     A +  V+  + 
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVQNTQD 815

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +  ++    +         D  ++        KA            I           R
Sbjct: 816  MADRIEEVEVVKGDLYTPYIDKAEETVAELTYQKAFE----------IYGNPLPDIIDLR 865

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            ++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++P+  
Sbjct: 866  IEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPP 924

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL  D   +PD D
Sbjct: 925  HYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKVPDID 984

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R  +  
Sbjct: 985  LNFSGDDQPSAHLDVRDIFGAEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYRDAE-- 1041

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDR 537
                                           +  ++    G+ R    H  GIV      
Sbjct: 1042 -------------------------------VDRLAAGAAGVKRTTGQHPGGIVVIPNYM 1070

Query: 538  PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+             T FN   I++  ++K D LG    T+++K      Q   
Sbjct: 1071 DVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQDLS 1124

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +D   IP DD     L +    LG+   Q+ +      +     + +  ++       P
Sbjct: 1125 GIDPITIPADDPGVMALFSGTEVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVNET---HP 1181

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                 ++  +   +G +  +     +      T   +I     + +  + +G     A  
Sbjct: 1182 TTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLQPKMAFT 1241

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K +  ++ +++      A +        +     +     Y F K+HAAAY ++
Sbjct: 1242 IMERVRKGLWLKISEEERNGYIDAMRENNVPDWYIESCGKI----KYMFPKAHAAAYVLM 1297

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---------------------------- 804
            + + A+ K H+P+ +  A  ++     E                                
Sbjct: 1298 ALRVAYFKVHHPLMYYCAYFSIRAKAFELKTMSGGLEAVKARMEDISIKRKNNEATNVEN 1357

Query: 805  -------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                      +  +   +     +      +F++  + +     A++G+G   A+ I++A
Sbjct: 1358 DLFTTLEIVNEMLERGFKFGKLDLYKSKATEFQIEGDTLIPPFVALEGLGENVAKQIVKA 1417

Query: 857  SADKPFDSLEDFCSR 871
              +  F S  +   R
Sbjct: 1418 RQEGEFLSKMELRKR 1432



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  AGI+ I 
Sbjct: 341 VEFHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARKAGIKAIF 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         +           +V 
Sbjct: 401 GLEANIVEDKVPISYDPVDMDLHEATYVVF 430


>gi|76363558|sp|P0C0B7|DPO3_STRPY RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|9789541|gb|AAF98345.1| DNA polymerase III alpha chain [Streptococcus pyogenes]
          Length = 1465

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 134/915 (14%), Positives = 284/915 (31%), Gaps = 169/915 (18%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+       ++ +Q N  +  +       +    + V    G + + +LV
Sbjct: 586  FLKDAREKHGIK-------NL-LQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLARYYDF 695

Query: 175  KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    +Y       L + +         ++++    + P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYRE 755

Query: 230  V---------LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            +         ++          +  P         N       F     A +  V+  + 
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVQNTQD 815

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +  ++    +         D  ++        KA            I           R
Sbjct: 816  FADRIEEVEVVKGDLYTPYIDKAEETVAELTYQKAFE----------IYGNPLPDIIDLR 865

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            ++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++P+  
Sbjct: 866  IEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPP 924

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL  D   +PD D
Sbjct: 925  HYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKVPDID 984

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R  +  
Sbjct: 985  LNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYRDAE-- 1041

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDR 537
                                           +  ++    G+ R    H  GIV      
Sbjct: 1042 -------------------------------VDRLAAGAAGVKRTTGQHPGGIVVIPNYM 1070

Query: 538  PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+             T FN   I++  ++K D LG    T+++K      Q   
Sbjct: 1071 DVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQDLS 1124

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +D   IP DD     L +    LG+   Q+ +      +     + +  ++       P
Sbjct: 1125 GIDPITIPADDPGVMALFSGTEVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVNET---HP 1181

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                 ++  +   +G +  +     +      T   +I     + +  + +G     A  
Sbjct: 1182 TTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFT 1241

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K +  ++ +++      A +        +     +     Y F K+HAAAY ++
Sbjct: 1242 IMERVRKGLWLKISEEERNGYIDAMRENNVPDWYIESCGKI----KYMFPKAHAAAYVLM 1297

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---------------------------- 804
            + + A+ K H+P+ +  A  ++     E                                
Sbjct: 1298 ALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDITIKRKNNEATNVEN 1357

Query: 805  -------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                      +  +   +     +     ++F++  + +     A++G+G   A+ I++A
Sbjct: 1358 DLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPFIALEGLGENVAKQIVKA 1417

Query: 857  SADKPFDSLEDFCSR 871
              +  F S  +   R
Sbjct: 1418 RQEGEFLSKMELRKR 1432



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 35/66 (53%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++   ++ +++D  A     AIAITD  N+ S      +A  AGI+ I 
Sbjct: 341 VELHAHTNMSTMDALPTVESLIDTAAKWGHKAIAITDHANVQSFPHGYHRARKAGIKAIF 400

Query: 72  GCQLDI 77
           G + +I
Sbjct: 401 GLEANI 406


>gi|168493969|ref|ZP_02718112.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae CDC3059-06]
 gi|183576230|gb|EDT96758.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae CDC3059-06]
 gi|332077575|gb|EGI88036.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae GA41301]
          Length = 1463

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 284/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +           A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNKIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|15675759|ref|NP_269933.1| DNA polymerase III PolC [Streptococcus pyogenes M1 GAS]
 gi|81175278|sp|P0C0B8|DPO3_STRP1 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|13622981|gb|AAK34654.1| DNA polymerase III (alpha subunit) [Streptococcus pyogenes M1 GAS]
          Length = 1465

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 134/915 (14%), Positives = 284/915 (31%), Gaps = 169/915 (18%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+       ++ +Q N  +  +       +    + V    G + + +LV
Sbjct: 586  FLKDAREKHGIK-------NL-LQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLARYYDF 695

Query: 175  KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    +Y       L + +         ++++    + P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYRE 755

Query: 230  V---------LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            +         ++          +  P         N       F     A +  V+  + 
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVQNTQD 815

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +  ++    +         D  ++        KA            I           R
Sbjct: 816  FADRIEEVEVVKGDLYTPYIDKAEETVAELTYQKAFE----------IYGNPLPDIIDLR 865

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            ++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++P+  
Sbjct: 866  IEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPP 924

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL  D   +PD D
Sbjct: 925  HYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKVPDID 984

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R  +  
Sbjct: 985  LNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYRDAE-- 1041

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDR 537
                                           +  ++    G+ R    H  GIV      
Sbjct: 1042 -------------------------------VDRLAAGAAGVKRTTGQHPGGIVVIPNYM 1070

Query: 538  PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+             T FN   I++  ++K D LG    T+++K      Q   
Sbjct: 1071 DVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQDLS 1124

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +D   IP DD     L +    LG+   Q+ +      +     + +  ++       P
Sbjct: 1125 GIDPITIPADDPGVMALFSGTEVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVNET---HP 1181

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                 ++  +   +G +  +     +      T   +I     + +  + +G     A  
Sbjct: 1182 TTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFT 1241

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K +  ++ +++      A +        +     +     Y F K+HAAAY ++
Sbjct: 1242 IMERVRKGLWLKISEEERNGYIDAMRENNVPDWYIESCGKI----KYMFPKAHAAAYVLM 1297

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---------------------------- 804
            + + A+ K H+P+ +  A  ++     E                                
Sbjct: 1298 ALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDITIKRKNNEATNVEN 1357

Query: 805  -------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                      +  +   +     +     ++F++  + +     A++G+G   A+ I++A
Sbjct: 1358 DLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPFIALEGLGENVAKQIVKA 1417

Query: 857  SADKPFDSLEDFCSR 871
              +  F S  +   R
Sbjct: 1418 RQEGEFLSKMELRKR 1432



 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++   ++ +++D  A     AIAITD  N+ S      +A  AGI+ I 
Sbjct: 341 VELHAHTNMSTMDALPTVESLIDTAAKWGHKAIAITDHANVQSFPHGYHRARKAGIKAIF 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I                     +V 
Sbjct: 401 GLEANIVEDKVPISYEPVDMDLHEATYVVF 430


>gi|225860309|ref|YP_002741818.1| DNA polymerase III PolC [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229634|ref|ZP_06963315.1| DNA polymerase III PolC [Streptococcus pneumoniae str. Canada
            MDR_19F]
 gi|225727760|gb|ACO23611.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae Taiwan19F-14]
          Length = 1463

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 284/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +           A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNKIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|307126490|ref|YP_003878521.1| DNA polymerase III subunit alpha, Gram-positive type [Streptococcus
            pneumoniae 670-6B]
 gi|306483552|gb|ADM90421.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae 670-6B]
 gi|332076720|gb|EGI87182.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae GA17545]
          Length = 1463

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 284/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +           A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNKIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLEAIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|218673335|ref|ZP_03523004.1| DNA polymerase III, alpha chain [Rhizobium etli GR56]
          Length = 251

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 97/249 (38%), Gaps = 29/249 (11%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           S+  LQV + +S L GA S   + +        A+ + D N+L   +   + + A G++ 
Sbjct: 2   SYAELQVTTHFSFLRGASSAQELFETAKQLGIEALGVVDRNSLAGIVRALEASRATGLRL 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           ++GC+LD+                    S+++       Y RL  L++        K + 
Sbjct: 62  VVGCRLDLADGM----------------SVLVYPMDRSAYSRLTRLITLGKSRGG-KNNC 104

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-R 188
            +    +    +EG+I +       +          +   +L    +LFGDR YV+L  R
Sbjct: 105 ILHWDDIVAY-SEGMIGIL------VPDL----PDDLCAIQLRKMAELFGDRAYVSLCLR 153

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
            R  D+ R  ++  +A   ++  V TN+ LF      +  D++  + H+T +      R 
Sbjct: 154 RRPNDQLRLHEISNMAARFKVRTVVTNDVLFHEPGRRQLQDIVTCIRHNTTIDDVGFERE 213

Query: 249 TPDHYLKNR 257
                    
Sbjct: 214 RHADRYLKP 222


>gi|319945650|ref|ZP_08019902.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641]
 gi|319748249|gb|EFW00491.1| DNA polymerase III PolC [Streptococcus australis ATCC 700641]
          Length = 1463

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 136/955 (14%), Positives = 286/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            NL + +        V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NLDLISPDSYKKARVKHATIYVKNQNGLKNMFKLVSLSNTQ-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +  A        A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL---------MAVAHST 238
                  +     ++++      P++AT N  +L  E+    +++         +      
Sbjct: 712  KDMDELQTIIKSLIEVGDRLGKPVLATGNVHYLEPEEEIYREIIVRSLGQGAIINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
              + +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GENAQPAPLPKAHFRTTNEMLDEFAFLGEDLARKLVIENTNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +  + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQLLVHRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPNKDCPNCGHQLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  + +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDFGKYYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNDIPMDDPGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +S     +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDILGVTPEQIGTSTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKAGIADLSTVIGCRDDIMVYLMHAGLDPKMAFTIMERVRKGMWLKIPEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANNVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPLYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLEAVKARMKEIAEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ I+ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSDATEFIIDGDTLIPPFVAMDGLGENVAKQIVRARKEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              ++  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGVSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDD 1461



 Score = 97.6 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 38/97 (39%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  ++ K A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEELVAKAAKWGHKALAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I         N+          +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPITYNEVDLDLHEATYVVF 428


>gi|149006027|ref|ZP_01829756.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae SP18-BS74]
 gi|147762383|gb|EDK69344.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae SP18-BS74]
          Length = 1463

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 284/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +           A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNEIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLEAIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|315111548|ref|YP_813210.2| DNA polymerase III, alpha subunit ( type) [Lactobacillus delbrueckii
            subsp. bulgaricus ATCC BAA-365]
          Length = 1445

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 157/904 (17%), Positives = 292/904 (32%), Gaps = 194/904 (21%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            D+      +N           I +L    + G + L ELVS   +    K  +R   S L
Sbjct: 597  DLGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSLAGIKYNFKG-LRTPKSEL 655

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ--------- 187
            + +   GL+  +  S G +  A      + A+K+   +        ++ +Q         
Sbjct: 656  RRLHA-GLLYGSACSQGEVFIAMMQKGYEEAKKKAEFYD-------FLEIQPPSNYSSLI 707

Query: 188  -RHRGYDRYRESQVV----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
                  D  +  +++    +L      P+VAT+++ ++ + +    DVL+A         
Sbjct: 708  ADGLIADEAQLEEILTNIYKLGKELNKPVVATSDAHYIDKHEAIYRDVLLAAQRG----N 763

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             +R +  PD +     EM+  FS + E +   V I+        +   + P   E     
Sbjct: 764  PNRNKQHPDLHFYTTQEMLDEFSFMGEDIAKEVVISNPNKINAMIDEGVQPVQDESFPPK 823

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            I    E  +R                       + + RLD EL+ I    +   +LI   
Sbjct: 824  IPHTAER-VRKLTYDKAHELYGDPL------PDNIQARLDRELDAIIGNGYGVVYLISQM 876

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------- 399
             +  + K+   VG  RGS   S+ A  + IT+I+P+                        
Sbjct: 877  LVAKSVKDGYLVG-SRGSVGSSLVATMMGITEINPMPPHYRCPKCKQSEFFENGEYASGF 935

Query: 400  ------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
                               ++ FE FL      +PD D++F  D +     +++  +G  
Sbjct: 936  DLPDKKCPDCQVMMVKDGQNIPFETFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPN 995

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
               +  T G+L  K A+  V               +                        
Sbjct: 996  HSFKAGTVGTLADKKAIGYVKHYQDEHPEIKMNNAE------------------------ 1031

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVT 556
                     +  ++  + G+      H AGIV    D+ + +L P+         +   T
Sbjct: 1032 ---------VDRLAIGVTGVKATTGQHPAGIVVLPDDKDIYELTPLQYPSDDISKEWKTT 1082

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             F+   I    L+KFD LG +  T+++     + Q    +D   IP DD +   L ++  
Sbjct: 1083 HFDFHQIHD-NLLKFDILGHQDPTMIR-----MLQDLSGIDPLTIPTDDPKVMSLFSSPE 1136

Query: 617  --------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
                          TLG+ +  +  +R  LE  +P    +++ +  L             
Sbjct: 1137 ALGVTPEQINSKTGTLGLPEFGTPFVRGMLEETKPSTFAELLQISGLSHG-------TDV 1189

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
               N +E I +    +  ++     ++           +  G     A      + K   
Sbjct: 1190 WLGNAEELINNGTCKLKSVIGCRDNIMT--------DLIRWGVKEEVAFSTMETVRKGKG 1241

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
               +       +    +    +              Y F K+HAAAY +++ + AW K +
Sbjct: 1242 ISDENMAVLKENKNIPDWYIPSCLKI---------KYMFPKAHAAAYILMALRVAWFKVY 1292

Query: 783  YPVEFLAASMTLEMDNVE---------------------------------KIKKFCQDA 809
            YP  + AA  ++  D V+                                    +   +A
Sbjct: 1293 YPEIYYAAYFSVRADKVDLEAMSRGKNTVVALINRIKEKGTAATKLEKDLQTYMELVNEA 1352

Query: 810  RQFNIQIMPPSVNTPCVDFK--VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
             +  I      +N         V  + I     A+ G+G + A+ I+ A ++ PF S ED
Sbjct: 1353 IERGINFKMVDINESEATTYKIVDKHTILAPFNAVDGLGDSAAKQIVAARSEAPFLSKED 1412

Query: 868  FCSR 871
               R
Sbjct: 1413 LQVR 1416



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 38/90 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH++ S L+    + +I+       Q A+AITD   L +     +     G++ I+
Sbjct: 340 VELHVHTNMSQLDATSDVADIIKTAKKFGQQAVAITDHAGLQALPNAFEAGKKTGMKVIM 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 400 GLEANMVEDHGLLVLNPASMKYEDQEFVIF 429


>gi|110004377|emb|CAK98715.1| probable dna polymerase III alpha subunit protein [Spiroplasma citri]
          Length = 1453

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 151/994 (15%), Positives = 298/994 (29%), Gaps = 237/994 (23%)

Query: 34   DKIAADQ-QPAIAITDTNNLFSALEF-SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKT 91
            +++A      AI +TD        E   +K          G + D D+++        K 
Sbjct: 552  EEVAHRGDYDAIVLTD------IYEHQLRKMINN-----YGIEFDNDIENIHDPAVYKKL 600

Query: 92   PFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGS 151
                   + +L     G   L +L++  +       S ++  S +++     L++ +   
Sbjct: 601  RPK---HMAILAKNQAGLLELFKLITSAHTK-YFYSSPKLLRSVIEQ-HRSNLLIGSSCV 655

Query: 152  SGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR----------HRGYDRYRESQVV 201
            +G +       +     + +  +        Y+ +Q               +    + + 
Sbjct: 656  NGDVFEVARNKNLSELRETIKFYD-------YIEVQPPSVYKHLVQMGDLSEERLLTVIK 708

Query: 202  QL---AYTHELPLVATNNSLFLSEEDYEAHDVLMAV-----AHSTVVSQKDRPRVTPDHY 253
             +   A      +VAT +  +L+ ED    +V +           +   K R    PD +
Sbjct: 709  DIVFTAKELNKLVVATGDVHYLNPEDKIFREVYINAKGIGGRPHPLYDYKKRVTDNPDQF 768

Query: 254  ---LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                          +D     E  V      S  ++    I  +    + +      +  
Sbjct: 769  LRTTMEMMNEFKFLNDDELIYEIVVTNPNLISDQIEKVEIIKDKLYTPKIEG----SDQL 824

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
            L+                      +    RL+ ELN I +  F+  + I    +  + ++
Sbjct: 825  LKELCYQNAYKIYGNPL------PKIVASRLERELNAIIKHGFAVIYWIAHKLVDKSLQD 878

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------- 399
               VG  RGS   S  A    IT+++PL+                               
Sbjct: 879  GYLVG-SRGSVGSSFVATMSNITEVNPLQPHYLCSYCSYSEFIVDGSVKCGYDLSARTCP 937

Query: 400  ----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
                        + FE FL  +   +PD D++F  + +     + +  +G   V +  T 
Sbjct: 938  KCQKPLKGEGHDIPFETFLGFEADKVPDIDLNFSGEYQPIAHDFTKEMFGERSVYRAGTI 997

Query: 450  GSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVD 509
             ++  K A   V       Y +   +  L                               
Sbjct: 998  STVAEKTAYGYV-----KGYFESKNILHLKRR---------------------------A 1025

Query: 510  RLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIE 564
             L  I++  EG+ R    H  GI  +  +  +    P+         +   T F+   I 
Sbjct: 1026 ELERIAKGCEGVKRTTGQHPGGIVVIPNEYEVEAFTPVNFPADDIKSNWLTTHFDFHAIH 1085

Query: 565  KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGT------- 617
               ++K D LG    T L+     + Q    VD   IP +D     L  +          
Sbjct: 1086 D-NVLKLDILGHVDPTALR-----MLQDLTGVDPKTIPTNDEAVLSLFRSLDVLNIKPED 1139

Query: 618  --------LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
                    +GI +  +  +R+ L   +P    D++ +  L                N +E
Sbjct: 1140 INGEKTGAIGIPEFGTFFVRKMLLDTKPTSFADLVQISGLSHG-------TDVWIGNAQE 1192

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I + +  I  ++     +++          +  G     A  +   + K      +   
Sbjct: 1193 LIRNQNISISEVIGCRDDIMV--------NLIYKGLPAQSAFKIMEDVRKGKGLTAE--- 1241

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
                     N + +    +  ++      Y F K+HA AY +++++ AW K +YPVE+ A
Sbjct: 1242 --HEQLMRDNNVEQWYIDSCNKI-----KYMFPKAHATAYVLMAWRVAWYKINYPVEYYA 1294

Query: 790  ASMTLEMDNVE-----------------------------------------KIKKFCQD 808
               +   D  +                                          + +   +
Sbjct: 1295 TFFSTRTDVFDIKTILKGAETIKQVLRDIQTRLDNKDFNAPNKPTQKEKDLIPVYEIALE 1354

Query: 809  ARQFNIQIMPPSVNTPCV-DFKV-----GDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
                 I++    + T    +F V      +  I    +AI G+G      I+ A  +KPF
Sbjct: 1355 MYARGIKMSNIDLKTSRNKNFTVITTENNEKIILPPFSAIDGLGGAVGDSIINARYEKPF 1414

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
             S+ D   R +   + +  LES       +  G 
Sbjct: 1415 LSVADLQKRTN---ITKAHLES------FEELGI 1439



 Score = 58.6 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-GIQPI 70
           + L +H+  S+++G   L  +   +      AIA TD  N+ +  E          I+ I
Sbjct: 323 IELHLHTKMSIMDGVTDLAMLFKTLQHWNHKAIAFTDHLNVQAYPEIYNLNKKYPDIKVI 382

Query: 71  IGCQLDIDMQ 80
            G + D+   
Sbjct: 383 YGVEADVLDD 392


>gi|149017968|ref|ZP_01834427.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP23-BS72]
 gi|147931532|gb|EDK82510.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP23-BS72]
          Length = 1463

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 132/955 (13%), Positives = 284/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +           A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              +  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FINKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNKIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYCSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|194397447|ref|YP_002036972.1| DNA polymerase III PolC [Streptococcus pneumoniae G54]
 gi|194357114|gb|ACF55562.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae G54]
          Length = 1463

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 284/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +           A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFESVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNKIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|168576299|ref|ZP_02722182.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae MLV-016]
 gi|307066950|ref|YP_003875916.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae AP200]
 gi|183577861|gb|EDT98389.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae MLV-016]
 gi|306408487|gb|ADM83914.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae AP200]
          Length = 1463

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 284/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +           A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFESVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNKIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|94991249|ref|YP_599349.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10270]
 gi|166217452|sp|Q1JEV4|DPO3_STRPD RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94544757|gb|ABF34805.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10270]
          Length = 1465

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 134/915 (14%), Positives = 282/915 (30%), Gaps = 169/915 (18%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+       ++ +Q N  +  +       +    + V    G + + +LV
Sbjct: 586  FLKDAREKHGIK-------NL-LQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDF 695

Query: 175  KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    +Y       L + +         ++++      P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKPVLATGNVHYLEPEEEIYRE 755

Query: 230  V---------LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            +         ++          +  P         N       F     A +  VE  + 
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVENTQD 815

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +  ++    +         D  ++        KA            I           R
Sbjct: 816  FADRIEEVEVVKGDLYTPYIDKAEETVAELTYQKAFE----------IYGNPLPDIIDLR 865

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            ++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++P+  
Sbjct: 866  IEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPP 924

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL  D   +PD D
Sbjct: 925  HYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKVPDID 984

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R  +  
Sbjct: 985  LNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYRDAE-- 1041

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDR 537
                                           +  ++    G+ R    H  GIV      
Sbjct: 1042 -------------------------------VDRLAAGAAGVKRTTGQHPGGIVVIPNYM 1070

Query: 538  PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+             T FN   I++  ++K D LG    T+++K      Q   
Sbjct: 1071 DVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQDLS 1124

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +D   IP DD     L +    LG+   Q+ +      +     + +  ++       P
Sbjct: 1125 GIDPITIPADDPGVMALFSGTEVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVNET---HP 1181

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                 ++  +   +G +  +     +      T   +I     + +  + +G     A  
Sbjct: 1182 TTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFT 1241

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K +  ++ +++      A +        +     +     Y F K+HAAAY ++
Sbjct: 1242 IMERVRKGLWLKISEEERNGYIDAMRENNVPDWYIESCGKI----KYMFPKAHAAAYVLM 1297

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---------------------------- 804
            + + A+ K H+P+ +  A  ++     E                                
Sbjct: 1298 ALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDITIKRKNNEATNVEN 1357

Query: 805  -------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                      +  +   +     +     ++F++  + +     A++G+G    + I++A
Sbjct: 1358 DLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPFIALEGLGENVGKQIVKA 1417

Query: 857  SADKPFDSLEDFCSR 871
              +  F S  +   R
Sbjct: 1418 RQEGEFLSKMELRKR 1432



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  AGI+ I 
Sbjct: 341 VEFHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARKAGIKAIF 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         +           +V 
Sbjct: 401 GLEANIVEDKVPISYDPVDMDLHEATYVVF 430


>gi|104774216|ref|YP_619196.1| DNA polymerase III, alpha subunit ( type) (PolC) [Lactobacillus
            delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103423297|emb|CAI98138.1| DNA polymerase III, alpha subunit (gram-positive type) (PolC)
            [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 1411

 Score =  183 bits (464), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 157/904 (17%), Positives = 292/904 (32%), Gaps = 194/904 (21%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            D+      +N           I +L    + G + L ELVS   +    K  +R   S L
Sbjct: 563  DLGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSLAGIKYNFKG-LRTPKSEL 621

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ--------- 187
            + +   GL+  +  S G +  A      + A+K+   +        ++ +Q         
Sbjct: 622  RRLHA-GLLYGSACSQGEVFIAMMQKGYEEAKKKAEFYD-------FLEIQPPSNYSSLI 673

Query: 188  -RHRGYDRYRESQVV----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
                  D  +  +++    +L      P+VAT+++ ++ + +    DVL+A         
Sbjct: 674  ADGLIADEAQLEEILTNIYKLGRELNKPVVATSDAHYIDKHEAIYRDVLLAAQRG----N 729

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             +R +  PD +     EM+  FS + E +   V I+        +   + P   E     
Sbjct: 730  PNRNKQHPDLHFYTTQEMLDEFSFMGEDIAKEVVISNPNKINAMIDEGVQPVQDESFPPK 789

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            I    E  +R                       + + RLD EL+ I    +   +LI   
Sbjct: 790  IPHTAER-VRKLTYDKAHELYGDPL------PDNIQARLDRELDAIIGNGYGVVYLISQM 842

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------- 399
             +  + K+   VG  RGS   S+ A  + IT+I+P+                        
Sbjct: 843  LVAKSVKDGYLVG-SRGSVGSSLVATMMGITEINPMPPHYRCPKCKQSEFFENGEYASGF 901

Query: 400  ------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
                               ++ FE FL      +PD D++F  D +     +++  +G  
Sbjct: 902  DLPDKKCPDCQVMMVKDGQNIPFETFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPN 961

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
               +  T G+L  K A+  V               +                        
Sbjct: 962  HSFKAGTVGTLADKKAIGYVKHYQDEHPEIKMNNAE------------------------ 997

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVT 556
                     +  ++  + G+      H AGIV    D+ + +L P+         +   T
Sbjct: 998  ---------VDRLAIGVTGVKATTGQHPAGIVVLPDDKDIYELTPLQYPSDDISKEWKTT 1048

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             F+   I    L+KFD LG +  T+++     + Q    +D   IP DD +   L ++  
Sbjct: 1049 HFDFHQIHD-NLLKFDILGHQDPTMIR-----MLQDLSGIDPLTIPTDDPKVMSLFSSPE 1102

Query: 617  --------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
                          TLG+ +  +  +R  LE  +P    +++ +  L             
Sbjct: 1103 ALGVTPEQINSKTGTLGLPEFGTPFVRGMLEETKPSTFAELLQISGLSHG-------TDV 1155

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
               N +E I +    +  ++     ++           +  G     A      + K   
Sbjct: 1156 WLGNAEELINNGTCKLKNVIGCRDNIMT--------DLIRWGVKEEVAFSTMETVRKGKG 1207

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
               +       +    +    +              Y F K+HAAAY +++ + AW K +
Sbjct: 1208 ISDENMAVLKENKNIPDWYIPSCLKI---------KYMFPKAHAAAYILMALRVAWFKVY 1258

Query: 783  YPVEFLAASMTLEMDNVE---------------------------------KIKKFCQDA 809
            YP  + AA  ++  D V+                                    +   +A
Sbjct: 1259 YPEIYYAAYFSVRADKVDLEAMSRGKNTVVALINRIKEKGTAATKLEKDLQTYMELVNEA 1318

Query: 810  RQFNIQIMPPSVNTPCVDFK--VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
             +  I      +N         V  + I     A+ G+G + A+ I+ A ++ PF S ED
Sbjct: 1319 IERGINFKMVDINESEATTYKIVDKHTILAPFNAVDGLGDSAAKQIVAARSEAPFLSKED 1378

Query: 868  FCSR 871
               R
Sbjct: 1379 LQVR 1382



 Score = 90.2 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH++ S L+    + +I+       QPA+AITD   L +     +     G++ I+
Sbjct: 306 VELHVHTNMSQLDATSDVADIIKTAKKFGQPAVAITDHAGLQALPNAFEAGKKTGMKVIM 365

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 366 GLEANMVEDHGLLVLNPASMKYEDQEFVIF 395


>gi|303259383|ref|ZP_07345360.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293]
 gi|303261138|ref|ZP_07347087.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292]
 gi|303263466|ref|ZP_07349389.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397]
 gi|303265758|ref|ZP_07351656.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457]
 gi|303267811|ref|ZP_07353613.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458]
 gi|302637975|gb|EFL68461.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS292]
 gi|302639317|gb|EFL69775.1| DNA polymerase III PolC [Streptococcus pneumoniae SP-BS293]
 gi|302642507|gb|EFL72852.1| DNA polymerase III PolC [Streptococcus pneumoniae BS458]
 gi|302644666|gb|EFL74915.1| DNA polymerase III PolC [Streptococcus pneumoniae BS457]
 gi|302647239|gb|EFL77463.1| DNA polymerase III PolC [Streptococcus pneumoniae BS397]
          Length = 1463

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 284/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +           A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDGAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNEIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NDYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|223933907|ref|ZP_03625870.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591]
 gi|223897433|gb|EEF63831.1| DNA polymerase III, alpha subunit [Streptococcus suis 89/1591]
          Length = 1463

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 139/958 (14%), Positives = 285/958 (29%), Gaps = 201/958 (20%)

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
             Q N ++  +       V    L V    G + + +LVS        +   RI  + L  
Sbjct: 598  NQLNTELIAEDSYKKARVKHATLYVINQVGLKNMFKLVSLSNTK-YFEGVPRIPRTVL-N 655

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR---------- 188
               EGLI+ T    G +           A K    +        ++ +            
Sbjct: 656  AHREGLILGTACQEGEVFDDLLSKGIDEAVKTAAYYD-------FIEVMPPALYAPMIAK 708

Query: 189  ----HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQK 243
                          Q++++     LP++AT N  ++  E+    ++++ A+     ++  
Sbjct: 709  EQFKDMAEIEETIKQLIEVGRRAGLPVLATGNVHYIDPEEEIYREIIVRALGQGAPINWT 768

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPE--------ALENTVEIARRCSFILQVHAPILPRF 295
                         ++   +    L E        A E  +          +    +    
Sbjct: 769  IGNGENAQPAPLPKAHFRTTSEMLDEFAFLGESLAREIVITNPNAMLDRFEDVQVVKTDL 828

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                 +  ++        KA            I           R++ EL  I    F+ 
Sbjct: 829  YTPYIEKAEETVAELTYQKAFE----------IYGNPLPDIIDLRIEKELTSILGNGFAV 878

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------- 399
             +L     +  + +    VG  RGS   S  A  + IT+++P+                 
Sbjct: 879  IYLASQMLVHRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITD 937

Query: 400  -------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                       + FE FL  D   +PD D++F  D +      V
Sbjct: 938  GSYGSGFDLPDKDCEKCGTKYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDV 997

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            ++ +G E   +  T G++ AK A   V R  +  Y +  R                    
Sbjct: 998  RDIFGEENAFRAGTVGTVAAKTAYGFV-RGYERDYGKFYR-------------------- 1036

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG--DRPLSQLVPMYRDVRS- 551
                            +  ++    G+ R    H  GI++      +    P+       
Sbjct: 1037 -------------DVEVERLAAGAAGVKRTTGQHPGGIIVFPDYMDVYDFTPVQYPADDV 1083

Query: 552  --DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
                  T FN   I++  ++K D LG    T+++K      Q    +D   IP DD    
Sbjct: 1084 TASWQTTHFNFHDIDE-NVLKLDILGHDDPTMVRK-----LQDLSGIDPQTIPADDKGVM 1137

Query: 610  HLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
             L +    LG+   Q+ +      +     + +  ++      +P     ++  +   +G
Sbjct: 1138 ALFSGTEILGVTPEQIGTPTGMLGIPEFGTNFVRGMVEET---KPTTFSELLQLSGLSHG 1194

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             +  +     +          +I     + +  + +G     A  +   + K +  ++ +
Sbjct: 1195 TDVWLGNAQDLIKAGIANLSTVIGCRDDIMVYLMHAGLPPKMAFNIMERVRKGLWLKISE 1254

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++      A K+       +     +     Y F K+HAAAY +++ + A+ K H+P+ +
Sbjct: 1255 EERNGYIQAMKDNKVPDWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPLYY 1310

Query: 788  LAASMTLEMDNVEKIKK-----------------------------------FCQDARQF 812
              A  ++     +                                          +  + 
Sbjct: 1311 YCAYFSIRAKAFDLATMSGGLDKVKAKMEEIALKKKNNEASNVEQDLYTTLELVNEMLER 1370

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              +     +      DF + DN +     A+ G+G   A+ ++ A A+  F S  +   R
Sbjct: 1371 GFKFGKLDLYKSHATDFLIEDNTLIPPFVAMDGLGENVAKQVVAARAEGEFLSKTELRKR 1430

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
                 L+  ++E       +D  G                   + K   +   ++F  
Sbjct: 1431 ---GGLSGTLVEK------MDEMGI------------------LGKMPEDNQLSLFDD 1461



 Score = 96.8 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++ +++ + AA    A+AITD  N+ S       A  AGI+P+ 
Sbjct: 339 VEFHAHTNMSTMDALPAVEDLVARAAAWGHKAVAITDHGNVQSFPHGYHAARKAGIKPLF 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 399 GMEANIVEDSVPIAYNEADVVLSDATYVVF 428


>gi|182683255|ref|YP_001835002.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14]
 gi|303255179|ref|ZP_07341253.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455]
 gi|182628589|gb|ACB89537.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae CGSP14]
 gi|301801215|emb|CBW33889.1| DNA polymerase III PolC-type [Streptococcus pneumoniae INV200]
 gi|302597812|gb|EFL64884.1| DNA polymerase III PolC [Streptococcus pneumoniae BS455]
          Length = 1463

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 284/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +           A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDGAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNEIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NDYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|255030789|ref|ZP_05302740.1| hypothetical protein LmonL_19816 [Listeria monocytogenes LO28]
          Length = 279

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 99/271 (36%), Positives = 168/271 (61%), Gaps = 3/271 (1%)

Query: 663 NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
            RK+GKEKI   HP +  +L+ T GVI+YQEQ++Q+A  ++G+SL EAD+LRRA+ KK  
Sbjct: 1   ARKHGKEKIQYPHPDLASILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVSKKKA 60

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
           + +++++  F+ GA   G S+  A  +++++ +FA+YGFN+SHAAAY+ I++Q A++K H
Sbjct: 61  DVLNEERIHFVEGAKSKGYSEASANQVYDMIVQFANYGFNRSHAAAYSKIAFQLAYLKAH 120

Query: 783 YPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR-IYYSLAA 841
           +P  F+++ ++    N +KI ++  +A+ + I ++ PS+N     F++ +   I YS   
Sbjct: 121 FPAAFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQMENETSIRYSFRV 180

Query: 842 IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
           I+ V T     I+      PF    DFC R+  K L+  VLE+LVF+G  D FG  R  +
Sbjct: 181 IRKVPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCFDEFGEDRATI 240

Query: 902 LQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
           L ++D + +Y   + ++  +K  N+FA +  
Sbjct: 241 LATIDAVLQYISLLGED--SKGMNLFAEDDE 269


>gi|313124033|ref|YP_004034292.1| DNA polymerase iii, alpha subunit (gram-positive type) (polc)
            [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280596|gb|ADQ61315.1| DNA polymerase III, alpha subunit (Gram-positive type) (PolC)
            [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 1445

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 155/904 (17%), Positives = 288/904 (31%), Gaps = 194/904 (21%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            D+      +N           I +L    + G + L ELVS   +    K  +R   S L
Sbjct: 597  DLGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSLAGIKYNFKG-LRTPKSEL 655

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-------- 188
            + +   GL+  +  S G +  A      + A+K+   +        ++ +Q         
Sbjct: 656  RRLHA-GLLYGSACSQGEVFIAMMQKGYEEAKKKAEFYD-------FLEIQPPSNYSSLI 707

Query: 189  ------HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
                           + + +L      P+VAT+++ ++ + +    DVL+A         
Sbjct: 708  AEGLIADEAQLEEILTNIYKLGKELNKPVVATSDAHYIDKHEAIYRDVLLAAQRG----N 763

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             +R +  PD +     EM+  FS + E +   V I+        +   + P   E     
Sbjct: 764  PNRNKQHPDLHFYTTQEMLDEFSFMGEDIAKEVVISNPNKINAMIDEGVQPVQDESFPPK 823

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            I    E  +R                       + + RLD EL+ I    +   +LI   
Sbjct: 824  IPHTAER-VRKLTYDKAHELYGDPL------PDNIQARLDRELDAIIGNGYGVVYLISQM 876

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------- 399
             +  + K+   VG  RGS   S+ A  + IT+I+P+                        
Sbjct: 877  LVAKSVKDGYLVG-SRGSVGSSLVATMMGITEINPMPPHYRCPKCKQSEFFENGEYASGF 935

Query: 400  ------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
                               ++ FE FL      +PD D++F  D +     +++  +G  
Sbjct: 936  DLPDKKCPDCQVMMVKDGQNIPFETFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPN 995

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
               +  T G+L  K A+                  +                        
Sbjct: 996  HSFKAGTVGTLADKKAIGYAKHYQDEHPEIKMNNAE------------------------ 1031

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVT 556
                     +  ++  + G+      H AGIV    D+ + +L P+         +   T
Sbjct: 1032 ---------VDRLAIGVTGVKATTGQHPAGIVVLPDDKDIYELTPLQYPSDDISKEWKTT 1082

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             F+   I    L+KFD LG +  T+++     + Q    +D   IP DD +   L ++  
Sbjct: 1083 HFDFHQIHD-NLLKFDILGHQDPTMIR-----MLQDLSGIDPLTIPTDDPKVMSLFSSPE 1136

Query: 617  --------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
                          TLG+ +  +  +R  LE  +P    +++ +  L             
Sbjct: 1137 ALGVTPEQINSKTGTLGLPEFGTPFVRGMLEETKPSTFAELLQISGLSHG-------TDV 1189

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
               N +E I +    +  ++     ++           +  G     A      + K   
Sbjct: 1190 WLGNAEELINNGTCKLKSVIGCRDNIMT--------DLIRWGVKEEVAFSTMETVRKGKG 1241

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
               +       +    +    +              Y F K+HAAAY +++ + AW K +
Sbjct: 1242 ISDENMAVLKENKNIPDWYIPSCLKI---------KYMFPKAHAAAYILMALRVAWFKVY 1292

Query: 783  YPVEFLAASMTLEMDNVE---------------------------------KIKKFCQDA 809
            YP  + AA  ++  D V+                                    +   +A
Sbjct: 1293 YPEIYYAAYFSVRADKVDLEAMSRGKNTVVALINRIKEKGTAATKLEKDLQTYMELVNEA 1352

Query: 810  RQFNIQIMPPSVNTPCVDFK--VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
             +  I      +N         V  + I     A+ G+G + A+ I+ A ++ PF S ED
Sbjct: 1353 IERGINFKMVDINESEATTYKIVDKHTILAPFNAVDGLGDSAAKQIVAARSEAPFLSKED 1412

Query: 868  FCSR 871
               R
Sbjct: 1413 LQVR 1416



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH++ S L+    + +I+       QPA+AITD   L +     +     G++ I+
Sbjct: 340 VELHVHTNMSQLDATSDVADIIKTAKKFGQPAVAITDHAGLQALPNAFEAGKKTGMKVIM 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 400 GLEANMVEDHGLLVLNPASMKYEDQEFVIF 429


>gi|94989303|ref|YP_597404.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS9429]
 gi|94993192|ref|YP_601291.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS2096]
 gi|123257711|sp|Q1J9R4|DPO3_STRPB RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|123382486|sp|Q1JJW3|DPO3_STRPC RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94542811|gb|ABF32860.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS9429]
 gi|94546700|gb|ABF36747.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS2096]
          Length = 1465

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 134/915 (14%), Positives = 284/915 (31%), Gaps = 169/915 (18%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+       ++ +Q N  +  +       +    + V    G + + +LV
Sbjct: 586  FLRDAREKHGIK-------NL-LQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDF 695

Query: 175  KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    +Y       L + +         ++++    + P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYRE 755

Query: 230  V---------LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            +         ++          +  P         N       F     A +  V+  + 
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVQNTQD 815

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +  ++    +         D  ++        KA            I           R
Sbjct: 816  FADRIEEVEVVKGDLYTPYIDKAEETVAELTYQKAFE----------IYGNPLPDIIDLR 865

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            ++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++P+  
Sbjct: 866  IEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPP 924

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL  D   +PD D
Sbjct: 925  HYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKVPDID 984

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R  +  
Sbjct: 985  LNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYRDAE-- 1041

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDR 537
                                           +  ++    G+ R    H  GIV      
Sbjct: 1042 -------------------------------VDRLAAGAAGVKRTTGQHPGGIVVIPNYM 1070

Query: 538  PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+             T FN   I++  ++K D LG    T+++K      Q   
Sbjct: 1071 DVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQDLS 1124

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +D   IP DD     L +    LG+   Q+ +      +     + +  ++       P
Sbjct: 1125 GIDPITIPADDPGVMALFSGTEILGVTPEQIGTPTGMLGIPEFGTNFVRGMVNET---HP 1181

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                 ++  +   +G +  +     +      T   +I     + +  + +G     A  
Sbjct: 1182 TTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFT 1241

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K +  ++ +++      A +        +     +     Y F K+HAAAY ++
Sbjct: 1242 IMERVRKGLWLKISEEERNGYIDAMRENNVPDWYIESCGKI----KYMFPKAHAAAYVLM 1297

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---------------------------- 804
            + + A+ K H+P+ +  A  ++     E                                
Sbjct: 1298 ALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDITIKRKNNEATNVEN 1357

Query: 805  -------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                      +  +   +     +     ++F++  + +     A++G+G   A+ I++A
Sbjct: 1358 DLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPFIALEGLGENVAKQIVKA 1417

Query: 857  SADKPFDSLEDFCSR 871
              +  F S  +   R
Sbjct: 1418 RQEGEFLSKMELRKR 1432



 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 38/90 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  AGI+ I 
Sbjct: 341 VELHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARKAGIKAIF 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         +           +V 
Sbjct: 401 GLEANIVEDKVPISYDPVDMDLHEATYVVF 430


>gi|116093619|gb|ABJ58772.1| DNA polymerase III catalytic subunit, PolC type [Lactobacillus
            delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 1411

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 157/904 (17%), Positives = 292/904 (32%), Gaps = 194/904 (21%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            D+      +N           I +L    + G + L ELVS   +    K  +R   S L
Sbjct: 563  DLGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSLAGIKYNFKG-LRTPKSEL 621

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ--------- 187
            + +   GL+  +  S G +  A      + A+K+   +        ++ +Q         
Sbjct: 622  RRLHA-GLLYGSACSQGEVFIAMMQKGYEEAKKKAEFYD-------FLEIQPPSNYSSLI 673

Query: 188  -RHRGYDRYRESQVV----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
                  D  +  +++    +L      P+VAT+++ ++ + +    DVL+A         
Sbjct: 674  ADGLIADEAQLEEILTNIYKLGKELNKPVVATSDAHYIDKHEAIYRDVLLAAQRG----N 729

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             +R +  PD +     EM+  FS + E +   V I+        +   + P   E     
Sbjct: 730  PNRNKQHPDLHFYTTQEMLDEFSFMGEDIAKEVVISNPNKINAMIDEGVQPVQDESFPPK 789

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            I    E  +R                       + + RLD EL+ I    +   +LI   
Sbjct: 790  IPHTAER-VRKLTYDKAHELYGDPL------PDNIQARLDRELDAIIGNGYGVVYLISQM 842

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------- 399
             +  + K+   VG  RGS   S+ A  + IT+I+P+                        
Sbjct: 843  LVAKSVKDGYLVG-SRGSVGSSLVATMMGITEINPMPPHYRCPKCKQSEFFENGEYASGF 901

Query: 400  ------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
                               ++ FE FL      +PD D++F  D +     +++  +G  
Sbjct: 902  DLPDKKCPDCQVMMVKDGQNIPFETFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPN 961

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
               +  T G+L  K A+  V               +                        
Sbjct: 962  HSFKAGTVGTLADKKAIGYVKHYQDEHPEIKMNNAE------------------------ 997

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVT 556
                     +  ++  + G+      H AGIV    D+ + +L P+         +   T
Sbjct: 998  ---------VDRLAIGVTGVKATTGQHPAGIVVLPDDKDIYELTPLQYPSDDISKEWKTT 1048

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             F+   I    L+KFD LG +  T+++     + Q    +D   IP DD +   L ++  
Sbjct: 1049 HFDFHQIHD-NLLKFDILGHQDPTMIR-----MLQDLSGIDPLTIPTDDPKVMSLFSSPE 1102

Query: 617  --------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
                          TLG+ +  +  +R  LE  +P    +++ +  L             
Sbjct: 1103 ALGVTPEQINSKTGTLGLPEFGTPFVRGMLEETKPSTFAELLQISGLSHG-------TDV 1155

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
               N +E I +    +  ++     ++           +  G     A      + K   
Sbjct: 1156 WLGNAEELINNGTCKLKSVIGCRDNIMT--------DLIRWGVKEEVAFSTMETVRKGKG 1207

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
               +       +    +    +              Y F K+HAAAY +++ + AW K +
Sbjct: 1208 ISDENMAVLKENKNIPDWYIPSCLKI---------KYMFPKAHAAAYILMALRVAWFKVY 1258

Query: 783  YPVEFLAASMTLEMDNVE---------------------------------KIKKFCQDA 809
            YP  + AA  ++  D V+                                    +   +A
Sbjct: 1259 YPEIYYAAYFSVRADKVDLEAMSRGKNTVVALINRIKEKGTAATKLEKDLQTYMELVNEA 1318

Query: 810  RQFNIQIMPPSVNTPCVDFK--VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
             +  I      +N         V  + I     A+ G+G + A+ I+ A ++ PF S ED
Sbjct: 1319 IERGINFKMVDINESEATTYKIVDKHTILAPFNAVDGLGDSAAKQIVAARSEAPFLSKED 1378

Query: 868  FCSR 871
               R
Sbjct: 1379 LQVR 1382



 Score = 88.3 bits (217), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 38/90 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH++ S L+    + +I+       Q A+AITD   L +     +     G++ I+
Sbjct: 306 VELHVHTNMSQLDATSDVADIIKTAKKFGQQAVAITDHAGLQALPNAFEAGKKTGMKVIM 365

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 366 GLEANMVEDHGLLVLNPASMKYEDQEFVIF 395


>gi|19746871|ref|NP_608007.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS8232]
 gi|24418360|sp|Q8NZB5|DPO3_STRP8 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|19749113|gb|AAL98506.1| DNA polymerase III alpha chain [Streptococcus pyogenes MGAS8232]
          Length = 1465

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 134/915 (14%), Positives = 284/915 (31%), Gaps = 169/915 (18%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+       ++ +Q N  +  +       +    + V    G + + +LV
Sbjct: 586  FLRDAREKHGIK-------NL-LQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDF 695

Query: 175  KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    +Y       L + +         ++++    + P++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEEEIYRE 755

Query: 230  V---------LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            +         ++          +  P         N       F     A +  V+  + 
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVQNTQD 815

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +  ++    +         D  ++        KA            I           R
Sbjct: 816  FADRIEEVEVVKGDLYTPYIDKAEETVAELTYQKAFE----------IYGNPLPDIIDLR 865

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            ++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++P+  
Sbjct: 866  IEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPP 924

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL  D   +PD D
Sbjct: 925  HYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKVPDID 984

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R  +  
Sbjct: 985  LNFSGDDQPSAHLDVRDIFGDEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYRDAE-- 1041

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDR 537
                                           +  ++    G+ R    H  GIV      
Sbjct: 1042 -------------------------------VDRLAAGAAGVKRTTGQHPGGIVVIPNYM 1070

Query: 538  PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+             T FN   I++  ++K D LG    T+++K      Q   
Sbjct: 1071 DVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQDLS 1124

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +D   IP DD     L +    LG+   Q+ +      +     + +  ++       P
Sbjct: 1125 GIDPITIPADDPGVMALFSGTEILGVTPEQIGTPTGMLGIPEFGTNFVRGMVNET---HP 1181

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                 ++  +   +G +  +     +      T   +I     + +  + +G     A  
Sbjct: 1182 TTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFT 1241

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K +  ++ +++      A +        +     +     Y F K+HAAAY ++
Sbjct: 1242 IMERVRKGLWLKISEEERNGYIDAMRENNVPDWYIESCGKI----KYMFPKAHAAAYVLM 1297

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---------------------------- 804
            + + A+ K H+P+ +  A  ++     E                                
Sbjct: 1298 ALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDITIKRKNNEATNVEN 1357

Query: 805  -------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                      +  +   +     +     ++F++  + +     A++G+G   A+ I++A
Sbjct: 1358 DLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPFIALEGLGENVAKQIVKA 1417

Query: 857  SADKPFDSLEDFCSR 871
              +  F S  +   R
Sbjct: 1418 RQEGEFLSKMELRKR 1432



 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 38/90 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  AGI+ I 
Sbjct: 341 VELHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARKAGIKAIF 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         +           +V 
Sbjct: 401 GLEANIVEDKVPISYDPVDMDLHEATYVVF 430


>gi|300812566|ref|ZP_07092983.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300496439|gb|EFK31544.1| DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus
            delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 1402

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 157/904 (17%), Positives = 292/904 (32%), Gaps = 194/904 (21%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            D+      +N           I +L    + G + L ELVS   +    K  +R   S L
Sbjct: 554  DLGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSLAGIKYNFKG-LRTPKSEL 612

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ--------- 187
            + +   GL+  +  S G +  A      + A+K+   +        ++ +Q         
Sbjct: 613  RRLHA-GLLYGSACSQGEVFIAMMQKGYKEAKKKAEFYD-------FLEIQPPSNYSSLI 664

Query: 188  -RHRGYDRYRESQVV----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
                  D  +  +++    +L      P+VAT+++ ++ + +    DVL+A         
Sbjct: 665  ADGLIADEAQLEEILTNIYKLGKELNKPVVATSDAHYIDKHEAIYRDVLLAAQRG----N 720

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             +R +  PD +     EM+  FS + E +   V I+        +   + P   E     
Sbjct: 721  PNRNKQHPDLHFYTTQEMLDEFSFMGEDIAKEVVISNPNKINAMIDEGVQPVQDESFPPK 780

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            I    E  +RN                      + + RLD EL+ I    +   +LI   
Sbjct: 781  IPHTAER-VRNLTYDKAHELYGDPL------PDNIQARLDRELDAIIGNGYGVVYLISQM 833

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------- 399
             +  + K+   VG  RGS   S+ A  + IT+I+P+                        
Sbjct: 834  LVAKSVKDGYLVG-SRGSVGSSLVATMMGITEINPMPPHYRCPKCKQSEFFENGEYASGF 892

Query: 400  ------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
                               ++ FE FL      +PD D++F  D +     +++  +G  
Sbjct: 893  DLPDKKCPDCQVMMVKDGQNIPFETFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPN 952

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
               +  T G+L  K A+                  +                        
Sbjct: 953  HSFKAGTVGTLADKKAIGYAKHYQDEHPEIKMNNAE------------------------ 988

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVT 556
                     +  ++  + G+      H AGIV    D+ + +L P+         +   T
Sbjct: 989  ---------VDRLAIGVTGVKATTGQHPAGIVVLPDDKDIYELTPLQYPSDDISKEWKTT 1039

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             F+   I    L+KFD LG +  T+++     + Q    +D   IP DD +   L ++  
Sbjct: 1040 HFDFHQIHD-NLLKFDILGHQDPTMIR-----MLQDLSGIDPLTIPTDDPKVMSLFSSPE 1093

Query: 617  --------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
                          TLG+ +  +  +R  LE  +P    +++ +  L             
Sbjct: 1094 ALGVTPEQINSKTGTLGLPEFGTPFVRGMLEETKPSTFAELLQISGLSHG-------TDV 1146

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
               N +E I +    +  ++     ++           +  G     A      + K   
Sbjct: 1147 WLGNAEELINNGTCKLKSVIGCRDNIMT--------DLIHWGVKEEVAFSTMETVRKGKG 1198

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
               +       +    +    +              Y F K+HAAAY +++ + AW K +
Sbjct: 1199 ISDENMAVLKENKNIPDWYIPSCLKI---------KYMFPKAHAAAYILMALRVAWFKVY 1249

Query: 783  YPVEFLAASMTLEMDNVE---------------------------------KIKKFCQDA 809
            YP  + AA  ++  D V+                                    +   +A
Sbjct: 1250 YPEIYYAAYFSVRADKVDLEAMSRGKNTVVALINRIKEKGTAATKLEKDLQTYMELVNEA 1309

Query: 810  RQFNIQIMPPSVNTPCVDFK--VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
             +  I      +N         V  + I     A+ G+G + A+ I+ A ++ PF S ED
Sbjct: 1310 IERGINFKMVDINESEATTYKIVDKHTILAPFNAVDGLGDSAAKQIVAARSEAPFLSKED 1369

Query: 868  FCSR 871
               R
Sbjct: 1370 LQVR 1373



 Score = 90.2 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH++ S L+    + +I+       QPA+AITD   L +     +     G++ I+
Sbjct: 297 VELHVHTNMSQLDATSDVADIIKTAKKFGQPAVAITDHAGLQALPNAFEAGKKTGMKVIM 356

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 357 GLEANMVEDHGLLVLNPASMKYEDQEFVIF 386


>gi|325688979|gb|EGD30987.1| DNA polymerase III PolC [Streptococcus sanguinis SK115]
          Length = 1462

 Score =  182 bits (462), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 134/955 (14%), Positives = 286/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  + ++       V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 600  NTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 657

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD-------- 193
            EGLI+ +  S G +  A        A +    +        ++ +     Y+        
Sbjct: 658  EGLILGSACSEGEVYDAVVSQGVDAAVEVAKYYD-------FIEVMPPAIYEPLIAKEQI 710

Query: 194  ------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++       ++AT N  ++  E+    ++         ++      
Sbjct: 711  KDQEELQTIIRNLIEVGERLGKLVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 770

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
              + +  P         N       F     A +  +    + +   +    +       
Sbjct: 771  GENAQPAPLPKAHFRTTNEMLDEFAFLGKDLAKKLVITNPNQLAETFEPVEVVKGDLYTP 830

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 831  FIDKAEETVAELTYQKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 880

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 881  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSY 939

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 940  GSGFDMPDKDCPECGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 999

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1000 FGAEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1038

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1039 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1085

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1086 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNDIPMDDAGVMALF 1139

Query: 613  TTKGTLGIFQ--LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+ Q  + +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1140 SGTDILGVTQEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1196

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  +  G     A  +   + K +  ++ +++ 
Sbjct: 1197 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGLDPKMAFTIMERVRKGLWLKISEEER 1256

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1257 NGYIAAMKENNVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1312

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1313 YFSIRAKAFDIKTMSGGLDAVKRRMNEIAEKRKNNEASNVEIDLYTTLEIVNEMLERGFK 1372

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +    +A+ G+G   AR ++ A  +  F S  +   R   
Sbjct: 1373 FGKLDLYKSHATEFLIEGDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKTELRKR--- 1429

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1430 GGLSSTLVEK------MDDMGI-----LGNMPE-------------DNQLSLFDE 1460



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  AGIQ I 
Sbjct: 338 VEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKKAGIQLIY 397

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I       + N+          +V 
Sbjct: 398 GMEANIVEDRVPIVYNEVDMELSDATYVVF 427


>gi|148994700|ref|ZP_01823804.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68]
 gi|168489751|ref|ZP_02713950.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae SP195]
 gi|147927100|gb|EDK78140.1| DNA polymerase III PolC [Streptococcus pneumoniae SP9-BS68]
 gi|183571799|gb|EDT92327.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae SP195]
 gi|332075131|gb|EGI85601.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae GA17570]
          Length = 1463

 Score =  182 bits (462), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 132/955 (13%), Positives = 284/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +           A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              +  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FINKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNKIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLEAIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 94.9 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGIEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|306820890|ref|ZP_07454510.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC
            43715]
 gi|304551004|gb|EFM38975.1| DNA polymerase III PolC [Eubacterium yurii subsp. margaretiae ATCC
            43715]
          Length = 1398

 Score =  182 bits (462), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 144/903 (15%), Positives = 291/903 (32%), Gaps = 191/903 (21%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            V+L     G + L +LVS  +       +  I  S + +   E L++ +G     +  A 
Sbjct: 573  VILAKNQAGVKDLYKLVSLAHTKYLYSGTPTIPKSEI-KNHRENLLVGSGFYESDVFSAI 631

Query: 160  FFNSS-QVAEKRLLTFKKLFGDRLYVNL--------------QRHRGYDRYRESQVVQLA 204
              N   +  E  +  +        Y+ +               R+    +     + Q+A
Sbjct: 632  LKNKPVKEIESIIDFYD-------YIEINPVTTMNSMINDESVRNVEEIKNINKTIYQIA 684

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
                  ++A++NS +L E++ +    ++  +        D            +       
Sbjct: 685  TKMGKTVIASSNSHYLDEDE-KLFRKILKSSIKKRDESPDNDLYLRTTDEMLQEFSYLGE 743

Query: 265  SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
                 A +  VE     +  ++   P+         +      + ELRN      +   +
Sbjct: 744  ---DVARKIVVENTNAIANTIEKVIPVPDGTFPPVIEG----SDEELRNMCYEKAKRIYS 796

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                      +   +RL+ ELN I    ++  ++I    +  +  +   VG  RGS   S
Sbjct: 797  DNL------PEIVEKRLEKELNSIINNGYAVMYIIAQKLVTKSLSDGYLVG-SRGSVGSS 849

Query: 385  VTAYALTITDIDPLR-----------------------------------------FSLL 403
            + AY   IT+++ L                                          F + 
Sbjct: 850  LAAYMSDITEVNALPPHYICPKCKSSEFILDGSYPTGADMPDKDCPVCGERYHKDGFDIP 909

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  +    PD D++F  + +    +Y Q  +G + V +  T G++  K A      
Sbjct: 910  FETFLGFEGDKEPDIDLNFAGEYQPNAHKYTQKLFGEDYVYRAGTIGTVAEKTAYG---- 965

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
                                        I      +  + +   ++ L    +K  G+ R
Sbjct: 966  ---------------------------FIKKYEELKSEKFSSAQIEVLQ---KKCTGIKR 995

Query: 524  HASTHAAGI--VIGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                H  G+  V   + +    P+             T F+   I    ++K D LG   
Sbjct: 996  TTGQHPGGVMVVPDYKDIYDFSPIQYPANDKKSGTLTTHFDYHSI-SGRILKLDILGHDG 1054

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETY---------HLLTTKGTLGIFQLESSGMR 629
             +++++  +F      K+ L                     +    GTLGI +  +  +R
Sbjct: 1055 PSIIRQLEEFTGTDATKIPLDDKLTMGLFANTDSLGCKLDEIDCLTGTLGIPEFGTKFVR 1114

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
            Q L   +P  + +++ +  L   G    +    +   G          +  ++     ++
Sbjct: 1115 QMLIDTKPSTLGELVRISGLSH-GTNVWVNNAQDLVRGNVA------SLKEVICTRDDIM 1167

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
             Y         +L G +   +  +   + K      + +          N + +      
Sbjct: 1168 NYL--------ILKGLNPKTSFKIMENVRKGKGLTEEYE----------NDMKENKVPQW 1209

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------- 800
            +    K  +Y F K+HAAAY ++S++ A+ K HYP  F A   T ++ + +         
Sbjct: 1210 YIDSCKKIEYMFPKAHAAAYVMLSFRIAYYKIHYPEAFYATYFTTKVFDFDVNIISKGQD 1269

Query: 801  ------------------------KIKKFCQDARQFNIQIMPPSVNTPCVD-FKV-GDNR 834
                                     + +   +  + NI++    +       FK+  +N 
Sbjct: 1270 AILEKIREINSLGNDASVKEKGLLTVLEVAFEMSKRNIKLEKVDLYNSDAKKFKLSENNT 1329

Query: 835  IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I     AI G+G   A  I + + +  F S+ED   R  +   ++ V+E L  +G +D  
Sbjct: 1330 IIPPFLAIPGLGDVVAEKIYQEAKESEFISVEDLKERTGA---SKTVIEELTNSGCIDNL 1386

Query: 895  GYS 897
              +
Sbjct: 1387 SNT 1389



 Score = 92.2 bits (227), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 41/86 (47%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH++ S ++G  S+  ++ +I + +  A+AITD   + +  +  + A   GI+PI 
Sbjct: 297 VELHVHTNMSQMDGLTSVKELMSRIKSYEHSAVAITDHAVVQAFPDVMEVAEKQGIKPIY 356

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           GC+  +       +  +    F    
Sbjct: 357 GCEFYVVEDTQEHIKVRKTAKFDGKY 382


>gi|222872380|gb|EEF09511.1| predicted protein [Populus trichocarpa]
          Length = 177

 Score =  182 bits (462), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 12/169 (7%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FVHL++H+ +S+++G   +N I+   A D Q A+A+TD NNLF  ++F ++  A G++P+
Sbjct: 19  FVHLRLHTEFSVVDGTNRINAIVKAAAEDGQVALAVTDFNNLFGGVKFYREGRAKGVKPV 78

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +G ++ I+ ++              V  I++LV +  GY  L EL++R +  +  K    
Sbjct: 79  LGAEIQIEGENG-----------AAVSRIIVLVQSPLGYHNLSELLARGWTRNVVKGQAV 127

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
              +WLQE+G EGLI+L G  +GP+ +A        A         ++ 
Sbjct: 128 HTWAWLQELG-EGLIVLAGAQAGPVGQALMRGDEAGAAAVAQRLASIWP 175


>gi|170016990|ref|YP_001727909.1| DNA polymerase III, alpha subunit [Leuconostoc citreum KM20]
 gi|169803847|gb|ACA82465.1| DNA polymerase III, alpha subunit, Gram-positive type [Leuconostoc
            citreum KM20]
          Length = 1437

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 133/907 (14%), Positives = 287/907 (31%), Gaps = 169/907 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N  MT              LLV    G + L +LVSR  + +   +  RI  S L ++  
Sbjct: 595  NDHMTEGDAWKHGRPVHATLLVQNTVGLKNLYKLVSRSNI-EFFARVPRIPRSVLNQL-R 652

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGL++ TG +SG +           A ++   +        ++ +Q              
Sbjct: 653  EGLLIGTGDTSGDVIMTLIEKGRVAALQKAKYYD-------FIEIQPTANYAPMIESGLI 705

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             +    +     +V +    +  +V T +  + + ED     +L+        ++   P 
Sbjct: 706  ANESQLQSILKDMVSIGDELDKTVVVTGDIKYTNPEDRIYRQILIGTQPGNPQNRTALPE 765

Query: 248  VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
                   +   +    F     A +  ++   + +  L+   P+                
Sbjct: 766  NYFRTTQQLLDDFA--FMGDTLARQLVIDNTHKIANCLETITPLKSGSYPPNIP----TA 819

Query: 308  ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
             +EL  +     +              +  + R+D EL  I    F+ +++I    ++ +
Sbjct: 820  GDELTRRTFENAKRWYGDPL------PEVIQARIDQELEAIIGNGFAPHYMIAQKLVEKS 873

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
             K+   VG  RGS   S  A    IT+++P                              
Sbjct: 874  NKDGYLVG-SRGSVGSSFVATMSGITEVNPFAPHYRSAHGDYFELADPKIYESGYDLPDK 932

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                           ++ FE F+      +PD D++F  D +     Y++  +G   V +
Sbjct: 933  PDPNHPGEMLIGDGQNIPFETFMGFKGDKVPDIDLNFSGDYQPIAHNYMKVLFGEHNVYR 992

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T  ++  K A   V +  +  + +  R  +                            
Sbjct: 993  AGTIATVAEKTAFGYV-KGFERDHDKNYRGTE---------------------------- 1023

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRSDLPVTQFNMKWI 563
                 +  ++Q + G+ R    H  GI+I      +    P+         +  +    +
Sbjct: 1024 -----VERLAQGITGVKRTTGQHPGGILIVPREYDVYDFTPVQYPADDQKSL--WQTTHM 1076

Query: 564  EKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF-- 621
            +   +   + L +  L     ++    +    +D   IP +D     L T+   LG+   
Sbjct: 1077 DYHAIH-DNLLKMDILGHDDPTMVRTLKDMSGIDPQSIPVNDPGVLSLFTSTDALGVNPE 1135

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            Q+ S      L     + +  ++      +P     ++  +   +G +  +     +   
Sbjct: 1136 QIFSKTGTLGLPEFGTNFVRGMLEET---QPHTYSELLQISGLSHGTDVWLGNANELIEN 1192

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
               T G +I     +    +  G+  ++A  +   + K      + Q +           
Sbjct: 1193 GTATIGTVIGTRDKIMTDLINWGFPAADAFNVMEKVRKGKGITDEYQAQLR--------- 1243

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
                    +        Y F ++HAAAY +++ + A+ K ++P  + A   ++  D  + 
Sbjct: 1244 -AAKIPEWYIQSMLKIKYMFPRAHAAAYVLMALRIAYFKVYFPTIYYATYFSVRADQFDI 1302

Query: 802  IKK---------------------------------FCQDARQFNIQIMPPSVNTPCV-D 827
            +                                      +A +  IQ     +      +
Sbjct: 1303 VAMSRGKNATKEALKRLRALGNDATVGDKNLLTVLEMANEALERGIQFSMVDLYRSEASE 1362

Query: 828  FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            + +  + +    +A+  +G   A+ I+ A  +KPF S ED   R    K+++ +++ L  
Sbjct: 1363 WVIDGDTLIPPFSAVPSLGENVAKQIIVARQEKPFLSKEDLKKR---GKVSQTIIDYLSQ 1419

Query: 888  AGALDCF 894
               LD  
Sbjct: 1420 NSVLDGM 1426



 Score = 69.0 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 29/81 (35%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L VH++ S ++       +     +  Q A+ + DT N+    E         ++ I 
Sbjct: 331 IELHVHTAMSAMDAVTDYGALAKLAKSWGQEALGVVDTANVQGFPEAVATGKKNDLKMIY 390

Query: 72  GCQLDIDMQDNLKMTNQGKTP 92
           G + ++         N    P
Sbjct: 391 GMEANLVEDGEPIAFNLAPVP 411


>gi|168484148|ref|ZP_02709100.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae CDC1873-00]
 gi|172042563|gb|EDT50609.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae CDC1873-00]
          Length = 1463

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 284/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVSRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +           A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPHKDCPSCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNEIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NDYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLEAIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYCSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNIPE-------------DNQLSLFDE 1461



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|260888664|ref|ZP_05899927.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC
           35185]
 gi|330839925|ref|YP_004414505.1| DNA polymerase III alpha subunit [Selenomonas sputigena ATCC 35185]
 gi|260861596|gb|EEX76096.1| DNA polymerase III, alpha subunit [Selenomonas sputigena ATCC
           35185]
 gi|329747689|gb|AEC01046.1| DNA polymerase III alpha subunit [Selenomonas sputigena ATCC 35185]
          Length = 831

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 137/839 (16%), Positives = 265/839 (31%), Gaps = 151/839 (17%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH+  S +E  LS+  +L   AA    A+A+TD + +    +  + A   G++ I 
Sbjct: 18  VELSVHTQMSEMESVLSVRELLRTAAAWGWKAVAVTDHDVVQVFPDAMKIAARLGVKVIY 77

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G    +  +D  +              I +L    +G   L ELV+  +  +       I
Sbjct: 78  GMDGSMAQEDGKESIP---------YRISMLAKNKKGLLHLYELVTLSH-RNVFHHQPHI 127

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR- 190
                 E+  EGL++ + G+ G + RA     S      +  F        Y+ +Q    
Sbjct: 128 PKRVFHEL-REGLLLGSAGAEGGLVRAIAAAKSDDEILAIANFYD------YLEIQPAEN 180

Query: 191 --------------GYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
                           +  R    ++V+++      LVAT +  +L+ ED     VL+  
Sbjct: 181 YVGLIADETFSCIQSEEDVRNIHRKIVEISKRTGKILVATGDVHYLNPEDAFCRRVLLNA 240

Query: 235 AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
           A       +    +     +      +   +     +  +  IA     I   +   LP 
Sbjct: 241 AGKKDDDTQSSRFLRTTEEMLQNFSHLGKEAAYEAVITGSNRIADLMDEIDPSYEKCLP- 299

Query: 295 FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
                  DI K   +  +   + G                +  ++RL+ EL VI   ++S
Sbjct: 300 -QIPHAHDIIKS-MSYDKATELYG------------RNLPRIVQERLEQELAVILEHEYS 345

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------- 399
             +L+    +Q A ++        GS   S+ A+ + IT+++PL                
Sbjct: 346 SLYLLPQKLVQKAHEDGHITCTN-GSIGASLAAHLIGITEVNPLPPHWRCAKCQYSQFIT 404

Query: 400 --------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
                                       + +   +  D    PD  + +    R      
Sbjct: 405 DGSVASGFNLQANICPQCGETLLGDGHDIPYAALVGFDGSRQPDIVMSYPDSYRSIAAEN 464

Query: 434 VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
           ++  +   RV    T  ++    +  +    +Q      DR+                  
Sbjct: 465 IEKVWERVRVYPAGTIETI----SYDEAVAYIQNALDTTDRI------------------ 502

Query: 494 DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDL 553
                       P    + +++++  G  +    + +  +I          +     SD 
Sbjct: 503 ------------PVGIPMQDVAEQCVGTKKAMGINDSAFIILPEDAEPGFFLPLQDVSDQ 550

Query: 554 PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT 613
               + +       L    FL L  L     SL    +RG    LS IPFDD     L  
Sbjct: 551 EGHTYRIPHFSYQNLT-NHFLKLNLLRYFVLSLLEKLERGTGCSLSNIPFDDPSAISLFR 609

Query: 614 TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              T+GI +  S  +RQ L+ +QP    +++ + +                         
Sbjct: 610 KADTVGIPEFHSPKVRQMLQELQPRFFSELVKISAFSHGTGAWEGNAQ------------ 657

Query: 674 IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
               +      T   +      + +  +  G     A  +  ++ K           + I
Sbjct: 658 ---KLISRGVCTLNEVAATRDDVMMYLIRKGIDPLRAFQIMESVRKGN-----GILPKTI 709

Query: 734 SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM 792
               + G+      +  ++      Y F ++H   + + +Y+ A+ K H+P EF  A +
Sbjct: 710 KILQEKGVPSWYIQSCQKM-----GYMFPRAHVVDHVMSNYRLAYYKAHHPQEFYRAYI 763


>gi|302024523|ref|ZP_07249734.1| DNA polymerase III PolC [Streptococcus suis 05HAS68]
          Length = 1463

 Score =  181 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 139/958 (14%), Positives = 285/958 (29%), Gaps = 201/958 (20%)

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
             Q N ++  +       V    L V    G + + +LVS        +   RI  + L  
Sbjct: 598  NQLNTELIAEDSYKKARVKHATLYVINQVGLKNMFKLVSLSNTK-YFEGVPRIPRTVL-N 655

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR---------- 188
               EGLI+ T    G +           A K    +        ++ +            
Sbjct: 656  AHREGLILGTACQEGEVFDDLLSKGIDEAVKTAAYYD-------FIEVMPPALYAPMIAK 708

Query: 189  ----HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQK 243
                 +        Q++++     LP++AT N  ++  E+    ++++ A+     ++  
Sbjct: 709  EQFKDKAEIEETIKQLIEVGRRAGLPVLATGNVHYIDPEEEIYREIIVRALGQGAPINWT 768

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPE--------ALENTVEIARRCSFILQVHAPILPRF 295
                         ++   +    L E        A E  +          +    +    
Sbjct: 769  IGNGENAQPAPLPKAHFRTTSEMLDEFAFLGESLAREIVITNPNAMLDRFEDVQVVKTDL 828

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                 +  ++        KA            I           R++ EL  I    F+ 
Sbjct: 829  YTPYIEKAEETVAELTYQKAFE----------IYGNPLPDIIDLRIEKELTSILGNGFAV 878

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------- 399
             +L     +  + +    VG  RGS   S  A  + IT+++P+                 
Sbjct: 879  IYLASQMLVHRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITD 937

Query: 400  -------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                       + FE FL  D   +PD D++F  D +      V
Sbjct: 938  GSYGSGFDLPDKDCEKCGTKYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDV 997

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            ++ +G E   +  T G++ AK A   V R  +  Y +  R                    
Sbjct: 998  RDIFGEENAFRAGTVGTVAAKTAYGFV-RGYERDYGKFYR-------------------- 1036

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG--DRPLSQLVPMYRDVRS- 551
                            +  ++    G+ R    H  GI++      +    P+       
Sbjct: 1037 -------------DVEVERLAAGAAGVKRTTGQHPGGIIVFPDYMDVYDFTPVQYPADDV 1083

Query: 552  --DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
                  T FN   I++  ++K D LG    T+++K      Q    +D   IP DD    
Sbjct: 1084 TASWQTTHFNFHDIDE-NVLKLDILGHDDPTMVRK-----LQDLSGIDPQTIPADDKGVM 1137

Query: 610  HLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
             L +    LG+   Q+        +     + +  ++      +P     ++  +   +G
Sbjct: 1138 ALFSGTEILGVIPEQIGIPTGMLGIPEFGTNFVRGMVEET---KPTTFSELLQLSGLSHG 1194

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             +  +     +          +I     + +  + +G     A  +   + K +  ++ +
Sbjct: 1195 TDVWLGNAQDLIKAGIANLSTVIGCRDDIMVYLMHAGLPPKMAFNIMERVRKGLWLKISE 1254

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++      A K+       +     +     Y F K+HAAAY +++ + A+ K H+P+ +
Sbjct: 1255 EERNGYIQAMKDNKVPDWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPLYY 1310

Query: 788  LAASMTLEMDNVEKIKK-----------------------------------FCQDARQF 812
              A  ++     +                                          +  + 
Sbjct: 1311 YCAYFSIRAKAFDLATMSGGLERVKAKMEEIALKKKNNEASNVEQDLYTTLELVNEMLER 1370

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              +     +      DF + DN +     A+ G+G   A+ ++ A A+  F S  +   R
Sbjct: 1371 GFKFGKLDLYKSHATDFLIEDNTLIPPFVAMDGLGENVAKQVVAARAEGEFLSKTELRKR 1430

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
                 L+  ++E       +D  G                   + K   +   ++F  
Sbjct: 1431 ---GGLSGTLVEK------MDEMGI------------------LGKMPEDNQLSLFDD 1461



 Score = 96.8 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++ +++ + AA    A+AITD  N+ S       A  AGI+P+ 
Sbjct: 339 VEFHAHTNMSTMDALPAVEDLVARAAAWGHKAVAITDHGNVQSFPHGYHAARKAGIKPLF 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 399 GMEANIVEDSVPIAYNEADVVLSDATYVVF 428


>gi|154249666|ref|YP_001410491.1| DNA-directed DNA polymerase [Fervidobacterium nodosum Rt17-B1]
 gi|154153602|gb|ABS60834.1| DNA-directed DNA polymerase [Fervidobacterium nodosum Rt17-B1]
          Length = 853

 Score =  181 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 179/771 (23%), Positives = 320/771 (41%), Gaps = 94/771 (12%)

Query: 199 QVVQLAYTHE--LPLVAT--NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
           + ++++  ++  +P++    ++  ++     E  + L       +     +       Y+
Sbjct: 59  KFIRVSKKYKDIIPVIGYRKHDKTYVFRNTSEFIEFLKIYNSRDLNEHNSKILEQRFTYI 118

Query: 255 KNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNK 314
           K++        +    +       +     ++        F      D  +    E   K
Sbjct: 119 KSKPIYFLPGQEEIYKILCDYMGKKIEIDDIENFDINKHIFEI----DESQFNIQEYSFK 174

Query: 315 AVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPV 374
           +   L +             ++Y++RL+ E+ ++   KF  YF  V   ++ AK +NI V
Sbjct: 175 SSQKLPISSDDFLEELLNQEKEYKERLEREIRLVKSFKFEDYFYTVKRIVEIAKAHNIEV 234

Query: 375 GPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
           G GRGS  GS+ AY L IT IDP++++LLFERFLN  R   PD D+D    RR E+I+ +
Sbjct: 235 GYGRGSAVGSLLAYRLGITKIDPVKYNLLFERFLNEGRTDYPDIDLDIEDVRRQELIKLL 294

Query: 435 QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
           ++++G   V  I TF                                     +  + +  
Sbjct: 295 KSEFG--YVYNISTFV-----------------------------------GIPKKFLDS 317

Query: 495 DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
                             E + +L  +    STHAAG++I   PL+          S + 
Sbjct: 318 IPE---------------EYANELSNIPIQRSTHAAGVIISTTPLN---VPMIHSESGID 359

Query: 555 VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTT 614
             +++M  ++  G IKFD LGLKTL++ ++  D ++Q                TY  ++ 
Sbjct: 360 TIEWDMDDLQYLGYIKFDLLGLKTLSIYKELRDTISQSFK----EEKEEFKKNTYRYISV 415

Query: 615 KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
             T  +FQLESS  +  +  ++P  I ++   +SL RPGP+ + +     +    KI  +
Sbjct: 416 GFTDNVFQLESSIGKSVVRDVKPSNISELAITISLNRPGPLRSGIT---GEIRNLKIKKL 472

Query: 675 HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
                 +L ET G+ IYQEQ+M+IA  L+G+S ++AD+LR+A+ KK  + + +  ER  +
Sbjct: 473 KKYNLEILDETYGLPIYQEQIMKIAMELAGFSSTQADILRKAIAKKDIDSIRQLYERLKN 532

Query: 735 GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
             +  G      + + + +  F +Y FNKSHA AY+ ++Y  A+ K ++P  F    +  
Sbjct: 533 --ALFGKLGKEGLELAKNILAFGEYAFNKSHAIAYSHLTYYMAYFKVNFPDIFYDTYLKY 590

Query: 795 EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIY-YSLAAIKGVGTTTARHI 853
           +   ++      Q      +     S           D +IY   L  + G+    ++ +
Sbjct: 591 DTSILQDALYNLQTLNYKVLPPKLFSNLKTMNK----DEKIYHLPLHILPGISVEKSKQL 646

Query: 854 MEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQ 913
                   F S EDF  + D   L   V+E+L+  GA D    SR + +Q L N++    
Sbjct: 647 ----QTMEFKSFEDFVEKAD---LPLSVIEALIKVGAFDDIFESRRKAIQKLRNLRN--- 696

Query: 914 WVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFS 964
              +        +F          + +++  VE    R   E  +LG   S
Sbjct: 697 KFNQEAVKIGNKLFG-------KIVKVDETKVEEDWERTNMEYDILGIAVS 740


>gi|146319608|ref|YP_001199320.1| DNA polymerase III PolC [Streptococcus suis 05ZYH33]
 gi|146321806|ref|YP_001201517.1| DNA polymerase III PolC [Streptococcus suis 98HAH33]
 gi|253752606|ref|YP_003025747.1| DNA polymerase III PolC-type [Streptococcus suis SC84]
 gi|253754432|ref|YP_003027573.1| DNA polymerase III PolC-type [Streptococcus suis P1/7]
 gi|253756365|ref|YP_003029505.1| DNA polymerase III PolC-type [Streptococcus suis BM407]
 gi|166217454|sp|A4W428|DPO3_STRS2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|166217456|sp|A4VXT1|DPO3_STRSY RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|145690414|gb|ABP90920.1| DNA polymerase III, alpha subunit (gram-positive type) [Streptococcus
            suis 05ZYH33]
 gi|145692612|gb|ABP93117.1| DNA polymerase III, alpha subunit (gram-positive type) [Streptococcus
            suis 98HAH33]
 gi|251816895|emb|CAZ52544.1| DNA polymerase III PolC-type [Streptococcus suis SC84]
 gi|251818829|emb|CAZ56672.1| DNA polymerase III PolC-type [Streptococcus suis BM407]
 gi|251820678|emb|CAR47440.1| DNA polymerase III PolC-type [Streptococcus suis P1/7]
 gi|292559223|gb|ADE32224.1| DNA polymerase III, alpha subunit [Streptococcus suis GZ1]
 gi|319759021|gb|ADV70963.1| DNA polymerase III PolC [Streptococcus suis JS14]
          Length = 1463

 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 137/958 (14%), Positives = 285/958 (29%), Gaps = 201/958 (20%)

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
             Q N ++  +       V    L V    G + + +LVS        +   RI  + L  
Sbjct: 598  NQLNTELIAEDSYKKARVKHATLYVINQVGLKNMFKLVSLSNTK-YFEGVPRIPRTVL-N 655

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR---------- 188
               EGLI+ T    G +           A K    +        ++ +            
Sbjct: 656  AHREGLILGTACQEGEVFDDLLSKGIDEAVKTAAYYD-------FIEVMPPALYAPMIAK 708

Query: 189  ----HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQK 243
                          Q++++     LP++AT N  ++  E+    ++++ A+     ++  
Sbjct: 709  EQFKDMAEIEETIKQLIEVGRRAGLPVLATGNVHYIDPEEEIYREIIVRALGQGAPINWT 768

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPE--------ALENTVEIARRCSFILQVHAPILPRF 295
                         ++   +    L E        A E  +          +    +    
Sbjct: 769  IGNGENAQPAPLPKAHFRTTSEMLDEFAFLGESLAREIVITNPNAMLDRFEDVQVVKTDL 828

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                 +  ++        KA            I           R++ EL  I    F+ 
Sbjct: 829  YTPYIEKAEETVAELTYQKAFE----------IYGNPLPDIIDLRIEKELTSILGNGFAV 878

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------- 399
             +L     +  + +    VG  RGS   S  A  + IT+++P+                 
Sbjct: 879  IYLASQMLVHRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITD 937

Query: 400  -------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                       + FE FL  D   +PD D++F  D +      V
Sbjct: 938  GSYGSGFDLPDKDCEKCGTKYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDV 997

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            ++ +G E   +  T G++ AK A   V R  +  Y +  R                    
Sbjct: 998  RDIFGEENAFRAGTVGTVAAKTAYGFV-RGYERDYGKFYR-------------------- 1036

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG--DRPLSQLVPMYRDVRS- 551
                            +  ++    G+ R    H  GI++      +    P+       
Sbjct: 1037 -------------DVEVERLAAGAAGVKRTTGQHPGGIIVFPDYMDVYDFTPVQYPADDV 1083

Query: 552  --DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
                  T FN   I++  ++K D LG    T+++K      Q    +D   IP DD    
Sbjct: 1084 TASWQTTHFNFHDIDE-NVLKLDILGHDDPTMVRK-----LQDLSGIDPQTIPADDKGVM 1137

Query: 610  HLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
             L +    LG+   Q+ +      +     + +  ++      +P     ++  +   +G
Sbjct: 1138 ALFSGTEILGVTPEQIGTPTGMLGIPEFGTNFVRGMVEET---KPTTFSELLQLSGLSHG 1194

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             +  +     +          +I     + +  + +G     A  +   + K +  ++ +
Sbjct: 1195 TDVWLGNAQDLIKAGIANLSTVIGCRDDIMVYLMHAGLPPKMAFNIMERVRKGLWLKISE 1254

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++      A K+       +     +     Y F K+HAAAY +++ + A+ K H+P+ +
Sbjct: 1255 EERNGYIQAMKDNKVPDWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPLYY 1310

Query: 788  LAASMTLEMDNVEKIKK-----------------------------------FCQDARQF 812
              A  ++     +                                          +  + 
Sbjct: 1311 YCAYFSIRAKAFDLATMSGGLERVKAKMEEIALKKKNNEASNVEQDLYTTLELVNEMLER 1370

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              +     +      DF + ++ +     A+ G+G   A+ ++ A A+  F S  +   R
Sbjct: 1371 GFKFGKLDLYKSHATDFLIEEDTLIPPFVAMDGLGENVAKQVVAARAEGEFLSKTELRKR 1430

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
                 L+  ++E       +D  G                   + K   +   ++F  
Sbjct: 1431 ---GGLSGTLVEK------MDEMGI------------------LGKMPEDNQLSLFDD 1461



 Score = 96.8 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++ +++ + AA    A+AITD  N+ S       A  AGI+P+ 
Sbjct: 339 VEFHAHTNMSTMDALPAVEDLVARAAAWGHKAVAITDHGNVQSFPHGYHAARKAGIKPLF 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 399 GMEANIVEDSVPIAYNEADVVLSDATYVVF 428


>gi|197294585|ref|YP_001799126.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
            australiense]
 gi|171853912|emb|CAM11875.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma
            australiense]
          Length = 1530

 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 145/928 (15%), Positives = 296/928 (31%), Gaps = 132/928 (14%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            ++ + +   + +     +     I +LV+  +GY+ L EL+S   L D   +  R+  S 
Sbjct: 623  NVLITNFFDLKDPIDPKYERSYHINILVANQKGYRNLFELLSAA-LTDGFYKKPRVLKSS 681

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY--- 192
            L +   EGL++ +G     I      ++ +   K +  +        Y+ +Q  + Y   
Sbjct: 682  LSK-HREGLLVGSGCYDSNIFEIALNSNIEKLRKAISFYD-------YIEIQPPQAYKHL 733

Query: 193  --------DRYRESQVVQL---AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH----- 236
                    ++   S ++++          ++AT +  ++   + +   + +         
Sbjct: 734  ISQLGDKGEKIIHSTLIKIIEETKKQNKIIIATGDVHYIHPWEKDYRQIYIKAKQVGGGL 793

Query: 237  STVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFI 296
              +    D                   F          +                  + +
Sbjct: 794  HKLSKYGDCNLPNNHLLTTQEMLEAFNFLQNDYLSREIIIDNTHLLNSKIEKIQPFTKEL 853

Query: 297  EKECDDIQKE---------EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                DD  K+         E   L  K V  L        I K    Q+    +    + 
Sbjct: 854  FSLKDDAFKDILNIPSIKKEIQSLVQKKVQKLYGPNPHPLIDKRLK-QELNSIIGDVNDA 912

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
             +    +  + +    ++ + ++   VG  RGS   S+ A  L IT+++PLR        
Sbjct: 913  TSNQDIAPIYYLSHLLVKKSLEDGYLVG-SRGSIGSSLVATMLDITEVNPLRPHYRCPNC 971

Query: 408  LNPDRMSMPDFDIDF----CQDRRDEVIRYVQNKYGHERVAQII--------------TF 449
                  + P+    +     Q   D + +         +                   TF
Sbjct: 972  CYTIIKTKPEEKEKYYSLEEQSYYDALGKVFSGYDLENKKCPKCQSPLEKDGHDIPFETF 1031

Query: 450  GSLQAKAA----LRDVGRALQMPYSQVDRLCKLIPNDPAHPV----SLQAIADDSRFREA 501
               +        L   G      ++ +  L        A  +       A      F E+
Sbjct: 1032 LGFEGNKTPDIDLNFAGDYQIKAHNYIKNLIGEKHAFRAGTIQTIAKRNAYGYVKGFVES 1091

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMY---RDVRSDLPVT 556
               +    ++ +I+ K+EG+ R    H  GIVI      + ++ P+     D  S+   T
Sbjct: 1092 ANKNWRKQKISQITTKIEGVKRSTGQHPGGIVIVPPNRSIYEITPIQFPANDTNSEWKTT 1151

Query: 557  QFNMKWIEKAGLIKFDFLGL---KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL- 612
             F+    E   L K D LG      +  L   +     +        IP DD E Y L  
Sbjct: 1152 HFDYHSFEN-NLFKLDILGHDDPMMIKFLMDCVKKNPNKFAFKKAQEIPLDDPEVYKLFS 1210

Query: 613  ------------TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
                         T  +LGI +  ++ ++Q L+ ++ +  ++I     +   G      V
Sbjct: 1211 EDMKITSAQNETITIDSLGIPEFGTTFVKQMLKDIKKNHKKNINFADLVKISGLSHGTDV 1270

Query: 661  YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
            +                          +I  ++ +M   Q   G    +A  +   + K 
Sbjct: 1271 WLKNAKDVIGQTGDFEKYKNQNISFDDIIGCRDDIMLQLQD-KGVDALKAFEIMEFIRKG 1329

Query: 721  IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMK 780
              +   K  + + +     G  +   ++  E +     Y F K+HA AY +++ + AW K
Sbjct: 1330 QPQNDPKTWQDYKNLM--EGKVENWYIDSAEKI----KYLFPKAHATAYVIMALRIAWFK 1383

Query: 781  THYPVEFLAASMTLEMDNVEKIKKFCQ--------------------------------D 808
             + P+ F +   +   +  +                                       +
Sbjct: 1384 VYAPLIFYSGYFSKRAEQFDHQIMISNDPEIIQNKINNLKKNEIKAKEAVLINTLQIAKE 1443

Query: 809  ARQFNIQIMPPSVNTPCVD-FKVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
              Q   + +    N   +D FK+ ++  +   L  I G+G   A+ I++   DKPF   E
Sbjct: 1444 MLQRGFKFLSVDFNKSDIDVFKIENDNYLRMPLLCIDGLGMIAAKKIIKTREDKPFTQ-E 1502

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCF 894
            DF +R    ++N+++ E ++    L+  
Sbjct: 1503 DFRTR---SRVNKKIFEQIIKENLLESL 1527



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 38/88 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           +    H+  S L+   S    L    +    AIA TD + ++S  E  + +    I+PI 
Sbjct: 358 IEFHTHTKMSNLDAINSAKEYLKIAESWGHEAIAFTDHDGIYSYPEIYEYSKGKKIKPIY 417

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
           G ++D   +  + +TNQ +       ++
Sbjct: 418 GLEIDFIQERPIYITNQIEDNLTQDFNL 445


>gi|94995162|ref|YP_603260.1| DNA polymerase III PolC [Streptococcus pyogenes MGAS10750]
 gi|123382133|sp|Q1J4M0|DPO3_STRPF RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|94548670|gb|ABF38716.1| DNA polymerase III alpha subunit [Streptococcus pyogenes MGAS10750]
          Length = 1465

 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 134/915 (14%), Positives = 282/915 (30%), Gaps = 169/915 (18%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F + A    GI+       ++ +Q N  +  +       +    + V    G + + +LV
Sbjct: 586  FLKDAREKHGIK-------NL-LQLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNIK-YFEGVPRIPRTVL-DAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLAKYYDF 695

Query: 175  KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    +Y       L + +         ++++       ++AT N  +L  E+    +
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRANKLVLATGNVHYLEPEEEIYRE 755

Query: 230  V---------LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            +         ++          +  P         N       F     A +  VE  + 
Sbjct: 756  IIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYQVVVENTQD 815

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +  ++    +         D  ++        KA            I           R
Sbjct: 816  FADRIEEVEVVKGDLYTPYIDKAEETVAELTYQKAFE----------IYGNPLPDIIDLR 865

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            ++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++P+  
Sbjct: 866  IEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPP 924

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL  D   +PD D
Sbjct: 925  HYVCPSCQHSEFITDGSVGSGYDLPNKPCPKCGTPYQKDGQDIPFETFLGFDGDKVPDID 984

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +      V++ +G E   +  T G++  K A   V +  +  Y +  R  +  
Sbjct: 985  LNFSGDDQPSAHLDVRDIFGAEYAFRAGTVGTVAEKTAYGFV-KGYERDYGKFYRDAE-- 1041

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDR 537
                                           +  ++    G+ R    H  GIV      
Sbjct: 1042 -------------------------------VDRLAAGAAGVKRTTGQHPGGIVVIPNYM 1070

Query: 538  PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+             T FN   I++  ++K D LG    T+++K      Q   
Sbjct: 1071 DVYDFTPVQYPADDVTASWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQDLS 1124

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +D   IP DD     L +    LG+   Q+ +      +     + +  ++       P
Sbjct: 1125 GIDPITIPADDPGVMALFSGTEVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVNET---HP 1181

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                 ++  +   +G +  +     +      T   +I     + +  + +G     A  
Sbjct: 1182 TTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFT 1241

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K +  ++ +++      A +        +     +     Y F K+HAAAY ++
Sbjct: 1242 IMERVRKGLWLKISEEERNGYIDAMRENNVPDWYIESCGKI----KYMFPKAHAAAYVLM 1297

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---------------------------- 804
            + + A+ K H+P+ +  A  ++     E                                
Sbjct: 1298 ALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDITIKRKNNEATNVEN 1357

Query: 805  -------FCQDARQFNIQIMPPSVNTP-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                      +  +   +     +     ++F++  + +     A++G+G   A+ I++A
Sbjct: 1358 DLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPFIALEGLGENVAKQIVKA 1417

Query: 857  SADKPFDSLEDFCSR 871
              +  F S  +   R
Sbjct: 1418 RQEGEFLSKMELRKR 1432



 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 38/90 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  AGI+ I 
Sbjct: 341 VELHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHANVQSFPHGYHRARKAGIKAIF 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         +           +V 
Sbjct: 401 GLEANIVEDKVPISYDPVDMDLHEATYVVF 430


>gi|325685948|gb|EGD28011.1| DNA polymerase III PolC [Lactobacillus delbrueckii subsp. lactis DSM
            20072]
          Length = 1402

 Score =  181 bits (459), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 156/904 (17%), Positives = 291/904 (32%), Gaps = 194/904 (21%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAE-GYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            D+      +N           I +L    + G + L ELVS   +    K  +R   S L
Sbjct: 554  DLGKMNDYSNGEGYKRARPTHITVLAQNQKPGLRNLYELVSLAGIKYNFKG-LRTPKSEL 612

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ--------- 187
            + +   GL+  +  S G +  A      + A+K+   +        ++ +Q         
Sbjct: 613  RRLHA-GLLYGSSCSQGEVFIAMMQKGYEEAKKKAEFYD-------FLEIQPPSNYSSLI 664

Query: 188  -RHRGYDRYRESQVV----QLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQ 242
                  D  +  +++    +L      P+VAT+++ ++ + +    DVL+A         
Sbjct: 665  ADGLIADEAQLEEILTNIYKLGKELNKPVVATSDAHYIDKHEAIYRDVLLAAQRG----N 720

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
             +R +  PD +     EM+  FS + E +   V I+        +   + P   E     
Sbjct: 721  PNRNKQHPDLHFYTTQEMLDEFSFMGEDIAKEVVISNPNKINAMIDEGVQPVQDESFPPK 780

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
            I    E  +R                       + + RLD EL+ I    +   +LI   
Sbjct: 781  IPHTAER-VRKLTYDKAHELYGDPL------PDNIQARLDRELDAIIGNGYGVVYLISQM 833

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------- 399
             +  + K+   VG  RGS   S+ A  + IT+I+P+                        
Sbjct: 834  LVAKSVKDGYLVG-SRGSVGSSLVATMMGITEINPMPPHYRCPKCKQSEFFENGEYASGF 892

Query: 400  ------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
                               ++ FE FL      +PD D++F  D +     +++  +G  
Sbjct: 893  DLPDKKCPDCQVMMVKDGQNIPFETFLGFHGDKVPDIDLNFSGDYQPVAHNFIRVMFGPN 952

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
               +  T G+L  K A+                  +                        
Sbjct: 953  HSFKAGTVGTLADKKAIGYAKHYQDEHPEIKMNNAE------------------------ 988

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVT 556
                     +  ++  + G+      H AGIV    D+ + +L P+         +   T
Sbjct: 989  ---------VDRLAIGVTGVKATTGQHPAGIVVLPDDKDIYELTPLQYPSDDISKEWKTT 1039

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             F+   I    L+KFD LG +  T+++     + Q    +D   IP DD +   L ++  
Sbjct: 1040 HFDFHQIHD-NLLKFDILGHQDPTMIR-----MLQDLSGIDPLTIPTDDPKVMSLFSSPE 1093

Query: 617  --------------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
                          TLG+ +  +  +R  LE  +P    +++ +  L             
Sbjct: 1094 ALGVTPEQINSKTGTLGLPEFGTPFVRGMLEETKPSTFAELLQISGLSHG-------TDV 1146

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
               N +E I +    +  ++     ++           +  G     A      + K   
Sbjct: 1147 WLGNAEELINNGTCKLKSVIGCRDNIMT--------DLIRWGVKEEVAFSTMETVRKGKG 1198

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
               +       +    +    +              Y F K+HAAAY +++ + AW K +
Sbjct: 1199 ISDENMAVLKENKNIPDWYIPSCLKI---------KYMFPKAHAAAYILMALRVAWFKVY 1249

Query: 783  YPVEFLAASMTLEMDNVE---------------------------------KIKKFCQDA 809
            YP  + AA  ++  D V+                                    +   +A
Sbjct: 1250 YPEIYYAAYFSVRADKVDLEAMSRGKNTVVALINRIKEKGTAATKLEKDLQTYMELVNEA 1309

Query: 810  RQFNIQIMPPSVNTPCVDFK--VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLED 867
             +  I      +N         V  + I     A+ G+G + A+ I+ A ++ PF S ED
Sbjct: 1310 IERGINFKMVDINESEATTYKIVDKHTILAPFNAVDGLGDSAAKQIVAARSEAPFLSKED 1369

Query: 868  FCSR 871
               R
Sbjct: 1370 LQVR 1373



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH++ S L+    + +I+       QPA+AITD   L +     +     G++ I+
Sbjct: 297 VELHVHTNMSQLDATSDVADIIKTAKKFGQPAVAITDHAGLQALPNAFEAGKKTGMKVIM 356

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 357 GLEANMVEDHGLLVLNPASMKYEDQEFVIF 386


>gi|237711879|ref|ZP_04542360.1| DNA polymerase III alpha subunit [Bacteroides sp. 9_1_42FAA]
 gi|317474977|ref|ZP_07934246.1| bacterial DNA polymerase III alpha subunit [Bacteroides eggerthii
            1_2_48FAA]
 gi|229454574|gb|EEO60295.1| DNA polymerase III alpha subunit [Bacteroides sp. 9_1_42FAA]
 gi|316908880|gb|EFV30565.1| bacterial DNA polymerase III alpha subunit [Bacteroides eggerthii
            1_2_48FAA]
          Length = 702

 Score =  181 bits (459), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 163/674 (24%), Positives = 291/674 (43%), Gaps = 90/674 (13%)

Query: 417  DFDIDFCQDRRDEVIRYVQNKYG---HERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            D D+D+  DRR E+  Y++ +Y     +RV    TF +++ KAAL+DV R  ++P+S V+
Sbjct: 13   DIDVDYASDRRQEIKDYLEERYNADGRQRVFSAGTFTTMKLKAALKDVARVHRVPHSIVN 72

Query: 474  RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
             +  +I +        +  A + + R+     P    ++E  Q L G  + AS HA+ IV
Sbjct: 73   YITAMIDDGTDWTGLFRQAASNRKLRDFIQTYPL---VIEDVQGLLGQPKAASIHASAIV 129

Query: 534  IGDRPLS-------QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
            +               +P+ +       V++F+   +++ GL+K D L  K L  L   +
Sbjct: 130  VTPDTRDGRPAECFDFLPVRK--MDGALVSEFDGYSVDEIGLLKEDVLATKELAKLSAVI 187

Query: 587  DFLAQRGVKV----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
              + +   +      ++    +D +TY LL+   T  +FQ  S G+ + ++ +QP+CIED
Sbjct: 188  ALVNRNFGQELTIGRITQDMLEDGKTYRLLSDGNTQNVFQFSSPGITRFIQDVQPECIED 247

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQL 701
            +IA+ +LYRP  +D     +  +  + ++    +       K T G+++YQEQ M +A  
Sbjct: 248  LIAVNALYRPATLDIGATDDYVRFRRGEVAPVYNYGCYEATKNTFGIMVYQEQFMSVAHT 307

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            L G+ L + D+LR+A+GKK  + M   K  FI+GA  NG     A  I+  +     Y F
Sbjct: 308  LGGFDLGKTDLLRKAIGKKKADLMATLKADFIAGAVGNGCPDYEAEEIWHKIEVAGKYSF 367

Query: 762  NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-IQIMPPS 820
            N+SHAAAYA+ +Y  AW+K +YP  F   ++  +  + ++I     +  + +  +I+PP 
Sbjct: 368  NRSHAAAYALTAYCGAWLKANYPSAFYTVAL--QWADDKEIPSLMAEMERCSPAKIVPPD 425

Query: 821  VNTPCVDFKVG--DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKL 877
            +N    +F      + I++SL  IK VG  T  +I+        +  +E+F  R+   KL
Sbjct: 426  INRSGTEFFTDYATDEIFWSLTRIKQVGLRTVEYIVTERDRGGAYTGIENFIHRIFRYKL 485

Query: 878  NR--------------------RVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
             +                    R ++ ++ AG  D     R++ + ++    + A     
Sbjct: 486  KKYSYWDDPDNAEEAVKVPVNARHVKHMILAGCFD-----RIEKVGAVTE--RCALLERA 538

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGF-YFSGHPLDVYKPILR 976
             R       F+  +  F   +    F   +          V G           Y+ I  
Sbjct: 539  ARELG----FSLSEKDFPQDMRGRHF-FWSQQQI-----AVSGIGSI------DYRRIFD 582

Query: 977  ----------KMGIKGYEESVATI-RGNNIRLAAMVVSK-------QQKKTRKGSRIGWV 1018
                      K      +E       G    + A VV         ++  +RK  R   +
Sbjct: 583  NSEASGQVKGKASYLTLDEVARDENDGRRAAVCATVVDVAEHTYKDRETGSRK--RFARL 640

Query: 1019 TFSEPAKEYEANFF 1032
            T S+  +  E   +
Sbjct: 641  TLSQNNRLAECVCW 654


>gi|225867817|ref|YP_002743765.1| DNA polymerase III PolC-type [Streptococcus equi subsp.
            zooepidemicus]
 gi|197941223|gb|ACH78331.1| DNA polymerase [Streptococcus equi subsp. zooepidemicus]
 gi|225701093|emb|CAW97928.1| DNA polymerase III PolC-type [Streptococcus equi subsp.
            zooepidemicus]
          Length = 1465

 Score =  181 bits (458), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 139/915 (15%), Positives = 281/915 (30%), Gaps = 169/915 (18%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F ++A    GI           +Q N  +  +       +    + V    G + + +LV
Sbjct: 586  FLKEAREKHGI--------TNLLQLNTDLVAEDSYKKARIKHATIYVQNQLGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNVK-YFEGVPRIPRTVLDQY-REGLLLGTACSDGEVFDAVLTQGIDAAVDLAKYYDF 695

Query: 175  KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    +Y       L + +         ++++    + P++AT N  ++  ED    D
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGVEQIIRDLIEVGRRAQKPVLATGNVHYIEPEDAIYRD 755

Query: 230  V---------LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            +         ++        + K  P         N       F     A E  V+  + 
Sbjct: 756  IIVRSLGQGAMINRTIGRGEAAKPVPLPEAHFRTTNEMLDDFAFLGKDLAYEVVVKNTQA 815

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +  ++    +         D  ++        KA A          I           R
Sbjct: 816  LADRIEEVEVVKGDLYTPYIDKAEETVAELTYQKAFA----------IYGNPLPDIIDLR 865

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            ++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++P+  
Sbjct: 866  IEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPP 924

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL  D   +PD D
Sbjct: 925  HYVCPSCQHSEFITDGSVGSGYDLPNKACPRCGTLYKKDGQDIPFETFLGFDGDKVPDID 984

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +      V++ +G E   +  T G++  K A   V +  +  Y          
Sbjct: 985  LNFSGDDQPNAHLDVRDIFGEEYAFRAGTVGTVAEKTAYGFV-KGYERDYG--------- 1034

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDR 537
                                           +  ++    G+ R    H  GIV      
Sbjct: 1035 ------------------------KFYPDAEVDRLAAGAAGVKRTTGQHPGGIVVIPNYM 1070

Query: 538  PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+             T FN   I++  ++K D LG    T+++K      Q   
Sbjct: 1071 DVYDFTPVQFPADDVTASWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLS 1124

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +D   IP DD +   L +    LG+   Q+ +      +     + +  ++       P
Sbjct: 1125 GIDPITIPADDPDVMALFSGTEVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVNET---HP 1181

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                 ++  +   +G +  +     +      T   +I     + +  + +G     A  
Sbjct: 1182 TTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFT 1241

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K +  ++ +++      A +        +     +     Y F K+HAAAY ++
Sbjct: 1242 IMERVRKGLWLKISEEERSSYIKAMRQNNVPDWYIESCGKI----KYMFPKAHAAAYVLM 1297

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---------------------------- 804
            + + A+ K H+P+ +  A  ++     E                                
Sbjct: 1298 ALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLAAVKARMEDISNKRKRNEASNVEN 1357

Query: 805  -------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                      +  +   +     +      +F++  + +     A++G+G   AR I++A
Sbjct: 1358 DLFTTLEIVNEMLERGFKFGKLDLYKSEATEFQIEGDTLIPPFIALEGLGENVARQIVKA 1417

Query: 857  SADKPFDSLEDFCSR 871
              D  F S  +   R
Sbjct: 1418 RQDGEFLSKMELRKR 1432



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++ +++D  A     A+AITD  N+ S      +A   GI+ I 
Sbjct: 341 VEFHAHTNMSTMDALPTVEDLIDTAARWGHQAVAITDHANVQSFPHGYHRARKVGIKAIF 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N           +V 
Sbjct: 401 GLEANIVEDKVPISFNPIAMDLHEATYVVF 430


>gi|195978859|ref|YP_002124103.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus
            MGCS10565]
 gi|195975564|gb|ACG63090.1| DNA polymerase III PolC [Streptococcus equi subsp. zooepidemicus
            MGCS10565]
          Length = 1465

 Score =  180 bits (457), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 140/915 (15%), Positives = 281/915 (30%), Gaps = 169/915 (18%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F ++A    GI           +Q N  +  +       +    + V    G + + +LV
Sbjct: 586  FLKEAREKHGI--------TNLLQLNTDLVAEDSYKKARIKHATIYVQNQLGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNVK-YFEGVPRIPRTVLDQ-HREGLLLGTACSDGEVFDAVLTQGIDAAVDLAKYYDF 695

Query: 175  KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    +Y       L + +         ++++    E P++AT N  ++  ED    D
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGVEQIIRDLIEVGRRAEKPVLATGNVHYIEPEDAIYRD 755

Query: 230  VL---------MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            ++         +        + K  P         N       F     A E  V+  + 
Sbjct: 756  IIVRSLGQGALINRTIGRGEAAKPVPLPEAHFRTTNEMLDDFAFLGQDLAYEVVVQNTQA 815

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +  ++    +         D  ++        KA A          I           R
Sbjct: 816  LADRIEEVEVVKGDLYTPYIDKAEETVAELTYQKAFA----------IYGNPLPDIIDLR 865

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            ++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++P+  
Sbjct: 866  IEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPP 924

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL  D   +PD D
Sbjct: 925  HYVCPSCQQSEFITDGSVGSGYDLPNKACPRCGTLYKKDGQDIPFETFLGFDGDKVPDID 984

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +      V++ +G E   +  T G++  K A   V +  +  Y          
Sbjct: 985  LNFSGDDQPNAHLDVRDIFGEEYAFRAGTVGTVAEKTAYGFV-KGYERDYG--------- 1034

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDR 537
                                           +  ++    G+ R    H  GIV      
Sbjct: 1035 ------------------------KFYPDAEVDRLAAGAAGVKRTTGQHPGGIVVIPNYM 1070

Query: 538  PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+             T FN   I++  ++K D LG    T+++K      Q   
Sbjct: 1071 DVYDFTPVQFPADDVTASWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLS 1124

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +D   IP DD +   L +    LG+   Q+ +      +     + +  ++       P
Sbjct: 1125 GIDPITIPADDPDVMALFSGTEVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVNET---HP 1181

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                 ++  +   +G +  +     +      T   +I     + +  + +G     A  
Sbjct: 1182 TTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFT 1241

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K +  ++ +++      A +        +     +     Y F K+HAAAY ++
Sbjct: 1242 IMERVRKGLWLKISEEERSSYIKAMRQNNVPDWYIESCGKI----KYMFPKAHAAAYVLM 1297

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---------------------------- 804
            + + A+ K H+P+ +  A  ++     E                                
Sbjct: 1298 ALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLAAVKARMEDISNKRKRNEASNVEN 1357

Query: 805  -------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                      +  +   +     +      +F++  + +     A++G+G   AR I++A
Sbjct: 1358 DLFTTLEIVNEMLERGFKFGKLDLYKSEATEFQIEGDTLIPPFIALEGLGENVARQIVKA 1417

Query: 857  SADKPFDSLEDFCSR 871
              D  F S  +   R
Sbjct: 1418 RQDGEFLSKMELRKR 1432



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++ +++D  A     A+AITD  N+ S      +A   GI+ I 
Sbjct: 341 VEFHAHTNMSTMDALPTVEDLIDTAARWGHQAVAITDHANVQSFPHGYHRARKVGIKAIF 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N           +V 
Sbjct: 401 GLEANIVEDKVPISFNPVAMDLHEATYVVF 430


>gi|290579638|ref|YP_003484030.1| DNA polymerase III subunit alpha [Streptococcus mutans NN2025]
 gi|254996537|dbj|BAH87138.1| DNA polymerase III alpha subunit [Streptococcus mutans NN2025]
          Length = 1470

 Score =  180 bits (457), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 137/932 (14%), Positives = 296/932 (31%), Gaps = 158/932 (16%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F ++A    G+        +  +  N K+ +        V    + V   +G + L +LV
Sbjct: 589  FLKEAKEKHGV--------NNLLDLNTKIVDNNSYKKARVKHATIYVLNQKGLKNLFKLV 640

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S    +       RI  + L +   +GL++ T  S G +         + A +    +  
Sbjct: 641  SLSN-VTYFAGVARIPRTILDQY-RDGLLLGTACSDGEVFDTVLSKGVEDAVEVAKYYDF 698

Query: 175  KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    LY       L +     +     ++++    + P++AT +  +L  ED    +
Sbjct: 699  IEVMPPALYEPLLARELIKDEAGIQQIIKNLIEVGRRLDKPVLATGDVHYLEPEDEIYRE 758

Query: 230  VLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            +++ ++    ++++              ++   +    L E      ++AR         
Sbjct: 759  IIVRSLGQGAMINRPIGRGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLARDIVIKNPNE 818

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                   +E    D+          K       +  +  I           R++ EL  I
Sbjct: 819  MVERFEDVEVVKTDLYTPFIENSEEKVAEMTYEKAFE--IYGNPLPDIIDLRIEKELTSI 876

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                F+  +L     +  + +    VG  RGS   S  A  + IT+++P+          
Sbjct: 877  LGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYICPNPD 935

Query: 400  ----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQD 425
                                                + FE FL  D   +PD D++F  D
Sbjct: 936  CKHSEFITDGSVGSGYDLPDKVCSECGTPYKKDGQDIPFETFLGFDGDKVPDIDLNFSGD 995

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +      V++ +G E   +  T G++  + A   V +  +  Y +  R  +        
Sbjct: 996  DQPSAHLDVRDIFGEEYAFRAGTVGTVADRTAYGFV-KGYERDYGKFYRDAE-------- 1046

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLV 543
                                     +  ++Q   G+ R    H  GIV       +    
Sbjct: 1047 -------------------------VDRLAQGSAGVKRTTGQHPGGIVVIPNYMDVYDFT 1081

Query: 544  PMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+         +   T FN   I++  ++K D LG    T+++K      Q    +D   
Sbjct: 1082 PVQYPADDLTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPKT 1135

Query: 601  IPFDDHETYHLLTTKGTLGIFQ--LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            IP DD E   L +    LG+ +  + +      +     + +  ++       P     +
Sbjct: 1136 IPADDPEVMKLFSGTEVLGVTEEEIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAEL 1192

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
            +  +   +G +  +     +      T   +I     + +  + +G     A  +   + 
Sbjct: 1193 LQLSGLSHGTDVWLGNAQDLIKQGIATLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVR 1252

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K    ++ +++      A +        +     +     Y F K+HAAAY +++ + A+
Sbjct: 1253 KGAWLKISEEERNGYISAMRENNVPDWYIESCGKI----KYMFPKAHAAAYVLMALRVAY 1308

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKK---------------------------------- 804
             K H+P+ +  A  ++     E                                      
Sbjct: 1309 FKVHHPIYYYCAYFSIRAKAFELKTMSAGLDAVKARMADISQKRKINQASNVEIDLFTTL 1368

Query: 805  -FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
                +  +   +     +      +F +  + +     A++G+G   A+ I++A  +  F
Sbjct: 1369 EIVNEMLERGFKFGQLDLYRSDATEFIIDGDTLIPPFVALEGLGENVAKQIVKARNEGEF 1428

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             S  +   R     L+  ++E +   G L   
Sbjct: 1429 LSKTELRKR---GGLSSTLVEKMSDMGILGSM 1457



 Score = 86.8 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++  ++ K A    PA+AITD  N+ S           GI+ + 
Sbjct: 344 VEFHAHTNMSTMDALPTVEQLVAKAAQFGHPAVAITDHGNVQSFPHGYHAGKKNGIKVLF 403

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       + N+          +V 
Sbjct: 404 GLEANLVEDRVPIVYNEVDMDMNEATYVVF 433


>gi|307297423|ref|ZP_07577229.1| DNA-directed DNA polymerase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916683|gb|EFN47065.1| DNA-directed DNA polymerase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 898

 Score =  180 bits (457), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 188/734 (25%), Positives = 307/734 (41%), Gaps = 70/734 (9%)

Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           K R               +   S+      +         + L           +     
Sbjct: 97  KPRNLDNSSGNPIWECRYLDHESEKFWVYASLQPEIEIADYSLPNDKNYRELEHDLLDLL 156

Query: 303 IQKEEENELRNKAVAGLEVRLAQ-------GAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
            +      L+           A+        A+ +     +Y  RL  EL+VI       
Sbjct: 157 SELPRNFSLKRIEHVFPVRVSAESFSSLLGKALEEKKMGDEYLSRLKRELSVILAKNIQD 216

Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
           YF+ V+  +  AK     +GPGRGS  GS+ +Y L IT IDP+   L FERFL+  R   
Sbjct: 217 YFMTVSKIVDIAKSIGCWIGPGRGSAVGSLVSYLLEITRIDPVAEDLFFERFLSLKRADP 276

Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
           PD D+D     R  +++ +   +G++R   I T  +   K A R++G+ L +     D++
Sbjct: 277 PDIDLDVDDKSRPVLLKKMYEYFGNDRFCLIRTHSTYGFKGAARELGKKLGIS---KDKI 333

Query: 476 CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
            KLI              D  RF  A   D  + RL ++S+ + GL+   S HAAG+++ 
Sbjct: 334 SKLIEWS----------KDGKRFPYAFEEDLDMKRLFDMSKLIAGLFSGYSLHAAGVILS 383

Query: 536 DRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
              L  L+P+  D   DLPV+ ++M  +   GL K D LGLK L+LL++           
Sbjct: 384 GISLKGLIPV--DFSEDLPVSLWDMDSLRIVGLQKIDILGLKNLSLLREM-------TQG 434

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +    P  D  TY  L +  T GIFQLE+    + +  ++P  + D+   ++L RPGPI
Sbjct: 435 KEPWDNPACDSNTYETLGSGYTTGIFQLEAPYATKIIRSVKPSSLRDLSICIALNRPGPI 494

Query: 656 DNIVVYNNRKNGKEKIVS-IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
            + V     K  +            P+L ET G ++YQEQV++IA  L      + ++LR
Sbjct: 495 KSGVTERFLKLSRVPSEIEKMRKRVPVLAETAGFLVYQEQVLKIASSLLSLEADDGELLR 554

Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
           RA+ KK ++ +D+  +     +            ++  L  FA Y FNKSH+ +YAVIS+
Sbjct: 555 RALSKKDRDAVDRLFQSSPGYSRL---PDERRAKLYSFLLDFAGYAFNKSHSLSYAVISF 611

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
             A+ K+++P  F    +           +   + R   +++         ++  V D +
Sbjct: 612 WLAYFKSNHPEIFYPLML--RELPRTSFGRLVAEIRDRGLKL--------SIENGVEDRK 661

Query: 835 IY-YSLAAI--KGVGTTTARHIMEASADKPFD-SLEDFCSRVDSKKLNRRVLESLVFAGA 890
           I   S+  +  KG               KPF+ S   F  R +  K   R LE L+ +G 
Sbjct: 662 IVSLSIPQLLNKG-----------ELKPKPFEDSFFTFV-RNNRSKYQARDLEKLIKSGY 709

Query: 891 LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
           LDC+G SR  LL+ +++         K+      ++F +++     +        +    
Sbjct: 710 LDCYG-SRNDLLKKMNDALTGVNPELKSIR----SVFGYKEELQEAR------EEDTPVE 758

Query: 951 RFENEQRVLGFYFS 964
           R   E   LGF  +
Sbjct: 759 RAMMEIETLGFNVT 772


>gi|24378642|ref|NP_720597.1| DNA polymerase III PolC [Streptococcus mutans UA159]
 gi|32469722|sp|Q8DWE0|DPO3_STRMU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|24376501|gb|AAN57903.1|AE014864_1 DNA polymerase III, alpha subunit [Streptococcus mutans UA159]
          Length = 1465

 Score =  180 bits (457), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 137/932 (14%), Positives = 296/932 (31%), Gaps = 158/932 (16%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F ++A    G+        +  +  N K+ +        V    + V   +G + L +LV
Sbjct: 584  FLKEAKEKHGV--------NNLLDLNTKIVDDNSYKKARVKHATIYVLNQKGLKNLFKLV 635

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S    +       RI  + L +   +GL++ T  S G +         + A +    +  
Sbjct: 636  SLSN-VTYFAGVARIPRTILDQY-RDGLLLGTACSDGEVFDTVLSKGVEDAVEVAKYYDF 693

Query: 175  KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    LY       L +     +     ++++    + P++AT +  +L  ED    +
Sbjct: 694  IEVMPPALYEPLLARELIKDEAGIQQIIKDLIEVGRRLDKPVLATGDVHYLEPEDEIYRE 753

Query: 230  VLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            +++ ++    ++++              ++   +    L E      ++AR         
Sbjct: 754  IIVRSLGQGAMINRPIGRGENAQPAPLPKAHFRTTNEMLDEFAFLGEDLARDIVIKNPNE 813

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
                   +E    D+          K       +  +  I           R++ EL  I
Sbjct: 814  MVERFEDVEVVKTDLYTPFIENSEEKVAEMTYEKAFE--IYGNPLPDIIDLRIEKELTSI 871

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
                F+  +L     +  + +    VG  RGS   S  A  + IT+++P+          
Sbjct: 872  LGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYICPNPD 930

Query: 400  ----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQD 425
                                                + FE FL  D   +PD D++F  D
Sbjct: 931  CKHSEFITDGSVGSGYDLPDKICSECGTPYKKDGQDIPFETFLGFDGDKVPDIDLNFSGD 990

Query: 426  RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
             +      V++ +G E   +  T G++  + A   V +  +  Y +  R  +        
Sbjct: 991  DQPSAHLDVRDIFGEEYAFRAGTVGTVADRTAYGFV-KGYERDYGKFYRDAE-------- 1041

Query: 486  PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLV 543
                                     +  ++Q   G+ R    H  GIV       +    
Sbjct: 1042 -------------------------VDRLAQGSAGVKRTTGQHPGGIVVIPNYMDVYDFT 1076

Query: 544  PMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
            P+         +   T FN   I++  ++K D LG    T+++K      Q    +D   
Sbjct: 1077 PVQYPADDLTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPKT 1130

Query: 601  IPFDDHETYHLLTTKGTLGIFQ--LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
            IP DD E   L +    LG+ +  + +      +     + +  ++       P     +
Sbjct: 1131 IPADDPEVMKLFSGTEVLGVTEEEIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAEL 1187

Query: 659  VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
            +  +   +G +  +     +      T   +I     + +  + +G     A  +   + 
Sbjct: 1188 LQLSGLSHGTDVWLGNAQDLIKQGIATLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVR 1247

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K    ++ +++      A +        +     +     Y F K+HAAAY +++ + A+
Sbjct: 1248 KGAWLKISEEERNGYISAMRENNVPDWYIESCGKI----KYMFPKAHAAAYVLMALRVAY 1303

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKK---------------------------------- 804
             K H+P+ +  A  ++     E                                      
Sbjct: 1304 FKVHHPIYYYCAYFSIRAKAFELKTMSAGLDAVKARMADISQKRKINQASNVEIDLFTTL 1363

Query: 805  -FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
                +  +   +     +      +F +  + +     A++G+G   A+ I++A  +  F
Sbjct: 1364 EIVNEMLERGFKFGQLDLYRSDATEFIIDGDTLIPPFVALEGLGENVAKQIVKARNEGEF 1423

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             S  +   R     L+  ++E +   G L   
Sbjct: 1424 LSKTELRKR---GGLSSTLVEKMSDMGILGSM 1452



 Score = 86.8 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++  ++ K A    PA+AITD  N+ S           GI+ + 
Sbjct: 339 VEFHAHTNMSTMDALPTVEQLVAKAAQFGHPAVAITDHGNVQSFPHGYHAGKKNGIKVLF 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       + N+          +V 
Sbjct: 399 GLEANLVEDRVPIVYNEVDMDMNEATYVVF 428


>gi|330833568|ref|YP_004402393.1| DNA polymerase III PolC [Streptococcus suis ST3]
 gi|329307791|gb|AEB82207.1| DNA polymerase III PolC [Streptococcus suis ST3]
          Length = 1463

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 140/958 (14%), Positives = 287/958 (29%), Gaps = 201/958 (20%)

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
             Q N ++  +       V    L V    G + + +LVS        +   RI  + L  
Sbjct: 598  NQLNTELIAEDSYKKARVKHATLYVINQVGLKNMFKLVSLSNTK-YFEGVPRIPRTVL-N 655

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR---------- 188
               EGLI+ T    G +           A K    +        ++ +            
Sbjct: 656  AHREGLILGTACQEGEVFDDLLSKGVDEAVKTAAYYD-------FIEVMPPALYAPMIAK 708

Query: 189  ----HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQK 243
                          Q++++     LP++AT N  ++  E+    ++++ A+     ++  
Sbjct: 709  EQFKDMAEIEETIKQLIEVGRRAGLPVLATGNVHYIDPEEEIYREIIVRALGQGAPINWT 768

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPE--------ALENTVEIARRCSFILQVHAPILPRF 295
                         ++   +    L E        A E  +          +    +    
Sbjct: 769  IGNGENAQPAPLPKAHFRTTSEMLDEFAFLGESLAREIVITNPNAMLDRFEDVQVVKTDL 828

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                 +  ++        KA            I           R++ EL  I    F+ 
Sbjct: 829  YTPYIEKAEETVAELTYQKAFE----------IYGNPLPDIIDLRIEKELTSILGNGFAV 878

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------- 399
             +L     +Q + +    VG  RGS   S  A  + IT+++P+                 
Sbjct: 879  IYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITD 937

Query: 400  -------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYV 434
                                       + FE FL  D   +PD D++F  D +      V
Sbjct: 938  GSYGSGFDLPDKDCEKCGTKYKKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDV 997

Query: 435  QNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIAD 494
            ++ +G E   +  T G++ AK A   V R  +  Y +  R                    
Sbjct: 998  RDIFGEENAFRAGTVGTVAAKTAYGFV-RGYERDYGKFYR-------------------- 1036

Query: 495  DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG--DRPLSQLVPMYRDVRS- 551
                            +  ++    G+ R    H  GI++      +    P+       
Sbjct: 1037 -------------DVEVERLAAGAAGVKRTTGQHPGGIIVFPDYMDVYDFTPVQYPADDV 1083

Query: 552  --DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
              +   T FN   I++  ++K D LG    T+++K      Q    +D   IP DD    
Sbjct: 1084 TANWQTTHFNFHDIDE-NVLKLDVLGHDDPTMVRK-----LQDLSGIDPQTIPADDKGVM 1137

Query: 610  HLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
             L +    LG+   Q+ +      +     + +  ++      +P     ++  +   +G
Sbjct: 1138 ALFSGTEILGVTPEQIGTPTGMLGIPEFGTNFVRGMVEET---KPTTFAELLQLSGLSHG 1194

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
             +  +     +          +I     + +  + +G     A  +   + K +  ++ +
Sbjct: 1195 TDVWLGNAQDLIKAGIADLSTVIGCRDDIMVYLMHAGLPPKMAFNIMERVRKGLWLKISE 1254

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
            ++      A K+       +     +     Y F K+HAAAY +++ + A+ K HYP+ +
Sbjct: 1255 EERNGYIQAMKDNKVPDWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHYPIYY 1310

Query: 788  LAASMTLEMDNVEKIKK-----------------------------------FCQDARQF 812
              A  ++     +                                          +  + 
Sbjct: 1311 YCAYFSIRAKAFDLATMSGGLERVKAKMEEIALKKKNNEASNVEQDLYTTLELVNEMLER 1370

Query: 813  NIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              +     +      DF + D+ +     A+ G+G   A+ ++ A A+  F S  +   R
Sbjct: 1371 GFKFGKLDLYKSHATDFLIEDDILIPPFVAMDGLGENVAKQVVAARAEGEFLSKTELRKR 1430

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
                 L+  ++E       +D  G                   + K   +   ++F  
Sbjct: 1431 ---GGLSGTLVEK------MDEMGI------------------LGKMPEDNQLSLFDD 1461



 Score = 96.8 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++ +++ + AA    A+AITD  N+ S       A  AGI+P+ 
Sbjct: 339 VEFHAHTNMSTMDALPAVEDLVARAAAWGHKAVAITDHGNVQSFPHGYHAARKAGIKPLF 398

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 399 GMEANIVEDSVPIAYNEADVVLSDATYVVF 428


>gi|225871273|ref|YP_002747220.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047]
 gi|225700677|emb|CAW95265.1| DNA polymerase III PolC-type [Streptococcus equi subsp. equi 4047]
          Length = 1465

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 140/915 (15%), Positives = 281/915 (30%), Gaps = 169/915 (18%)

Query: 58   FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
            F ++A    GI           +Q N  +  +       +    + V    G + + +LV
Sbjct: 586  FLKEAREKHGI--------TNLLQLNTDLVAEDSYKKARIKHATIYVQNQLGLKNMFKLV 637

Query: 117  SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF-- 174
            S   +    +   RI  + L +   EGL++ T  S G +  A        A      +  
Sbjct: 638  SLSNVK-YFEGVPRIPRTVLDQ-HREGLLLGTACSDGEVFDAVLTQGIDAAVDLAKYYDF 695

Query: 175  KKLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
             ++    +Y       L + +         ++++    E P++AT N  ++  ED    D
Sbjct: 696  IEIMPPAIYQPLVVRELIKDQAGVEQIIRDLIEVGRRAEKPVLATGNVHYIEPEDAIYRD 755

Query: 230  VL---------MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
            ++         +        + K  P         N       F     A E  V+  + 
Sbjct: 756  IIVRSLGQGALINRTIGRGEAAKPVPLPEAHFRTTNEMLDDFAFLGQDLAYEVVVQNTQA 815

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
             +  ++    +         D  ++        KA A          I           R
Sbjct: 816  LADRIEKVEVVKDDLYTPYIDKAEETVAELTYQKAFA----------IYGNPLPDIIDLR 865

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            ++ EL  I    F+  +L     +  + +    VG  RGS   S  A  + IT+++P+  
Sbjct: 866  IEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPP 924

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                      + FE FL  D   +PD D
Sbjct: 925  HYVCPSCQQSEFITDGSVGSGYDLPNKACPRCGTLYKKDGQDIPFETFLGFDGDKVPDID 984

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F  D +      V++ +G E   +  T G++  K A   V +  +  Y          
Sbjct: 985  LNFSGDDQPNAHLDVRDIFGEEYAFRAGTVGTVAEKTAYGFV-KGYERDYG--------- 1034

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDR 537
                                           +  ++    G+ R    H  GIV      
Sbjct: 1035 ------------------------KFYPDAEVDRLAAGAAGVKRTTGQHPGGIVVIPNYM 1070

Query: 538  PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
             +    P+             T FN   I++  ++K D LG    T+++K      Q   
Sbjct: 1071 DVYDFTPVQFPADDVTASWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLS 1124

Query: 595  KVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
             +D   IP DD +   L +    LG+   Q+ +      +     + +  ++       P
Sbjct: 1125 GIDPITIPADDPDVMALFSGTEVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVNET---HP 1181

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
                 ++  +   +G +  +     +      T   +I     + +  + +G     A  
Sbjct: 1182 TTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFT 1241

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K +  ++ +++      A +        +     +     Y F K+HAAAY ++
Sbjct: 1242 IMERVRKGLWLKISEEERSSYIKAMRQNNVPDWYIESCGKI----KYMFPKAHAAAYVLM 1297

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---------------------------- 804
            + + A+ K H+P+ +  A  ++     E                                
Sbjct: 1298 ALRVAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLAAVKARMEDISNKRKRNEASNVEN 1357

Query: 805  -------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEA 856
                      +  +   +     +      +F++  + +     A++G+G   AR I++A
Sbjct: 1358 DLFTTLEIVNEMLERGFKFGKLDLYKSEATEFQIEGDTLIPPFIALEGLGENVARQIVKA 1417

Query: 857  SADKPFDSLEDFCSR 871
              D  F S  +   R
Sbjct: 1418 RQDGEFLSKMELRKR 1432



 Score = 84.8 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  AGI+ I 
Sbjct: 341 VEFHAHTNMSTMDALPTVEDLIDTAARWGHQAVAITDHANVQSFPHGYHRARKAGIKAIF 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N           +V 
Sbjct: 401 GLEANIVEDKVPISFNPVAMDLHEATYVVF 430


>gi|15902295|ref|NP_357845.1| DNA polymerase III PolC [Streptococcus pneumoniae R6]
 gi|116515846|ref|YP_815772.1| DNA polymerase III PolC [Streptococcus pneumoniae D39]
 gi|32469721|sp|Q8DRA5|DPO3_STRR6 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|122279342|sp|Q04MH6|DPO3_STRP2 RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|15457800|gb|AAK99055.1| DNA polymerase III, alpha subunit [Streptococcus pneumoniae R6]
 gi|116076422|gb|ABJ54142.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            pneumoniae D39]
          Length = 1463

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 284/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVSRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +           A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNKIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLEAIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 94.9 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGIEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|297588407|ref|ZP_06947050.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516]
 gi|297573780|gb|EFH92501.1| DNA polymerase III PolC [Finegoldia magna ATCC 53516]
          Length = 1421

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 143/928 (15%), Positives = 295/928 (31%), Gaps = 196/928 (21%)

Query: 77   IDMQDNLKMTNQGKTPFPTVPS-IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            +    N+   +   +          +      G + L +LV+   L     +   I  S 
Sbjct: 569  VKFDININKIDSDWSISKRESHTATIYAQNLIGLKNLYKLVTASNLK-YFYREGGIPKSE 627

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFF-FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD- 193
            L +   EGL++ +G   G + +A   F S +  ++ +  +        ++ +Q    YD 
Sbjct: 628  LNKR-REGLVIGSGNEDGELIKAILGFESDEKLDEIISRYD-------FLEVQPPLYYDG 679

Query: 194  -------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                              ++  L+  H  PLVA + + +  + DY   ++++      + 
Sbjct: 680  VKSKRMSFNLKSCEELTRKLYDLSKKHNKPLVADSYAKYFEKTDYIFRNIILEGQPRKIY 739

Query: 241  SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
             +K          L  R+    +        +   EI    +  +      +    +   
Sbjct: 740  GEKF-------PTLFFRTTDEMMNEFSFLEKDVAEEILIDNTIKISEMLDDIKPIPDGTF 792

Query: 301  DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
              + +  + ELR                      +    RL+ EL+ I    ++  ++I 
Sbjct: 793  PPVIEGSDTELREMTYKKARSIYGDDL------PEIVESRLERELSSIISNGYAVLYIIA 846

Query: 361  ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------- 399
               ++ + ++   VG  RGS   S  A    IT+++PL                      
Sbjct: 847  QKLVKKSNEDGYLVG-SRGSVGSSFVATMADITEVNPLIPHYICENCKHSEFIHDENIGS 905

Query: 400  --------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
                                 ++ FE FL  D    PD D++F  + +  V +Y +  +G
Sbjct: 906  GVDLEDKICPVCGQPLKKEGHNIPFEVFLGFDGDKEPDIDLNFAGEYQPTVHKYTEELFG 965

Query: 440  HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
              +V +  T G++  K A   + +  +                           ++S  +
Sbjct: 966  EGKVFRAGTIGTISDKTAYGYIKKYFE---------------------DKNVYVNNSEIK 1004

Query: 500  EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVRS---DLP 554
              +             + + G+ R +  H  G++I  R   +    P+         D+ 
Sbjct: 1005 YLQ-------------RGILGVKRTSGQHPGGVMIVPRDKDIEDFCPVQHPADDVNSDII 1051

Query: 555  VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP-FDDHETYHLLT 613
             T FN K I    ++K D LG    T+++   D      + + +          +   L 
Sbjct: 1052 TTHFNYKSI-SGRILKLDLLGHDVPTIIKMLSDMTGVDPLTIPMDDKETMSIFSSIDALH 1110

Query: 614  TKGTLG--------IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
             +  +         I +  ++ +R  L    P    +++ +  L   G    +    +  
Sbjct: 1111 FEELIDGLDIGTLGIPEFGTNFVRGMLRDTTPKTFSELVRISGLSH-GTNVWLNNAQDLI 1169

Query: 666  NGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEM 725
                        +   +     ++IY   + +  +    + + E     R + +      
Sbjct: 1170 RDGVV------ELKDTICTRDDIMIYL--INKGLEKKRSFKIMETVRKNRLLDED----- 1216

Query: 726  DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPV 785
                   ++  ++NG+      +      K  +Y F K+HA AY ++SY+ A+ K HYP 
Sbjct: 1217 ------TLNYMTENGVPNWYIESC-----KTIEYLFPKAHAVAYVMMSYRIAYFKVHYPE 1265

Query: 786  EFLAASMTLEMDNV-------------------------------------EKIKKFCQD 808
             F +   T+++ +                                        + +  ++
Sbjct: 1266 AFYSTFFTIKLQDYPGDVIVRGLSAIREEMQSLKDKYKESNSKMTAKDSNKYSVLEVAEE 1325

Query: 809  ARQFNIQIMPPSVNTP-CVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLE 866
                 I+     ++      FKV     I     A++GV    +  I E      F S +
Sbjct: 1326 MYCRGIKQSRVDLHKSDKARFKVLEKGFIQPPFNALEGVSDANSIAIFEEIQKGDFISKQ 1385

Query: 867  DFCSRVDSKKLNRRVLESLVFAGALDCF 894
            DF  R    K+N+  LE L   G LD  
Sbjct: 1386 DFTMRT---KVNKTALEILENHGVLDGL 1410



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L ++S  S L+G + L+     +     PA+ +TD + +    +        G++P+ 
Sbjct: 317 VELHMYSQMSQLDGFIDLDECCKTLKKWGHPALGLTDKSVVQGYPQLYDACSKNGLKPLF 376

Query: 72  GCQLDIDMQDNLKMTNQGKT 91
           G +  I   D   +TN   +
Sbjct: 377 GMEAKIIEDDFRIITNPYDS 396


>gi|283769479|ref|ZP_06342375.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia
            extructa W1219]
 gi|283103747|gb|EFC05133.1| DNA polymerase III, alpha subunit, Gram-positive type [Bulleidia
            extructa W1219]
          Length = 1442

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 132/934 (14%), Positives = 278/934 (29%), Gaps = 208/934 (22%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVP--SIVLLVSTAEGYQRLIELVSRMYLL--------- 122
            Q  ++   +L+      + F  +     +++     G + L +LVS              
Sbjct: 561  QFQVETIRDLQDKVHTDSDFKRMFSKHAIVIAKNQAGLKVLYDLVSISNTETLAVKTKNE 620

Query: 123  -DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                    RI  S LQ+   + L++ +   +G +            +K +  +       
Sbjct: 621  GSNAIGEPRIKRSTLQKY-RQNLLVGSACLNGEVFEMACNGDDDRLKKTMAFYD------ 673

Query: 182  LYVNLQRHRGYD--------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
             Y+ LQ    Y               +  + +++ +A+  ELP++AT++  +  +E+   
Sbjct: 674  -YIELQPLGNYSTSLELGSLPNLARLKEVQQRMIAMAHELELPILATSDCHYCKQEEKIF 732

Query: 228  HDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL------ENTVEIARR 280
             D+ + A     +                N  + + +  ++ +        +   E+   
Sbjct: 733  RDIYITAKGVGGIAHPLYIRNEQIRRSHPNPDQHLRLTDEMIKEFSWLNNSQLVEELVLD 792

Query: 281  CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
                L      +    +     I +  +++LR       +         +G      ++R
Sbjct: 793  TPHQLFKEIEEIEPVPKGTYPPIIEGSDDQLREL----CQKTAMDRYGFRGKVPDLVQKR 848

Query: 341  LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
            LD EL+ I R  F  ++ I +  +    ++   VG  RGS   S  A    IT+++PL  
Sbjct: 849  LDNELDNIIRNGFGVHYYIASLLVMKTNEDGYVVG-SRGSVGSSFAATMSHITEVNPLPP 907

Query: 400  ----------------------------------------FSLLFERFLNPDRMSMPDFD 419
                                                     ++ F+ FL  +    PD D
Sbjct: 908  HYLCPQCHYSEFFLNGEVLSGFDLEDKSCPHCGAIMKGNGHNIPFQTFLGFNADKTPDID 967

Query: 420  IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
            ++F    + +   ++++ +G E   +  T G++  K A   V               K  
Sbjct: 968  LNFSDLYQAKAHNFIKDYFGEEHAFRAGTIGTVAEKTAFGYV---------------KGY 1012

Query: 480  PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDR 537
              D     S                         ++   + + R    H  GIVI   + 
Sbjct: 1013 EEDMGVQFSYPMKE-------------------YLAMHCQDVKRTTGQHPGGIVIVPSNH 1053

Query: 538  PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
             +    P+        P   +     E         L    L  +  +   L Q    V 
Sbjct: 1054 VVEDFTPIQYPSNQPGP---WKTTHFEYHDY-GDQILKFDILGHVDPTSMRLLQEIATVK 1109

Query: 598  LSLIPFDDHETYHLLTTKGT--------------LGIFQLESSGMRQALEGMQPDCIEDI 643
               IP +D +T  L                    +G+ +  ++  R+ L+   P    D+
Sbjct: 1110 PMDIPMNDRDTLSLFYEDKALKADPRLYHQETGAVGLPEFGTANTRRVLQETNPHTFSDL 1169

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
              L  L                N +E +   HP ++ ++     ++ Y            
Sbjct: 1170 TILSGLTHG-------TDVWAGNAEELVKQGHP-LNEVIGCRDDIMTYLLD--------K 1213

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
                 ++  +  ++ K      +++         ++ +      +  ++      Y F K
Sbjct: 1214 KLEPLDSFKIMESVRKGKGLTEEQE-----KTMREHQVPDWYIDSCKKI-----KYMFPK 1263

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK------IKKFCQDARQFN---- 813
            +HA AY +++ + AW K H P+ F    +TL  D  +       +     +  +      
Sbjct: 1264 AHAVAYVMMAVRIAWYKVHEPINFYIQYLTLRCDAYDISIMSKGLNAIRLEMDRIKKLMD 1323

Query: 814  -------------IQIMPPSVNTPCVDFKVGD------------------NRIYYSLAAI 842
                            +          + + +                    +      +
Sbjct: 1324 TRDPSLSNKDKALFNTLEICEEMYARGYSIENVNLYESLSTRFKKSPTNPKAVIPPFVVV 1383

Query: 843  KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
              +G + A  I+EA     F S ED  +R    K
Sbjct: 1384 DSLGESVAETIVEARQSGEFLSKEDLLARTHLSK 1417



 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 15/101 (14%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--SQKAC------ 63
           +    H+++S ++G  S   ++          I +TD  N+ S ++     +        
Sbjct: 300 IEFHSHTNFSEMDGVCSPQEVIQYAWDLGHEGIVLTDHANVQSFVKAKHYVEGLRRKDPN 359

Query: 64  ---AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
                G     GC+L++   D   +             +V 
Sbjct: 360 RSFKVG----FGCELNLVEDDLCIVRQPNDQKIDEATYVVF 396


>gi|148988015|ref|ZP_01819478.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP6-BS73]
 gi|147926479|gb|EDK77552.1| DNA polymerase III subunit alpha [Streptococcus pneumoniae SP6-BS73]
          Length = 1463

 Score =  179 bits (455), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 133/955 (13%), Positives = 284/955 (29%), Gaps = 201/955 (21%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVSRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +           A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGRPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++ AK A   V +  +  Y +  R  +                    
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE-------------------- 1039

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  ++Q   G+ R    H  GIV       +    P+         +
Sbjct: 1040 -------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTAE 1086

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K      Q    +D + IP DD     L 
Sbjct: 1087 WQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK-----LQDLSGIDPNKIPMDDEGVMALF 1140

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +     + +  ++       P     ++  +   +G + 
Sbjct: 1141 SGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVDET---HPTTFAELLQLSGLSHGTDV 1197

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +          +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1198 WLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGLWLKISEEER 1257

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A K        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1258 NGYIEAMKANKVPEWYIESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCA 1313

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     +                                          +  +   +
Sbjct: 1314 YFSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFK 1373

Query: 816  IMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
                 +      +F +  + +     A+ G+G   A+ ++ A  +  F S  +   R   
Sbjct: 1374 FGKLDLYCSQATEFLIDGDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR--- 1430

Query: 875  KKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
              L+  ++E       +D  G      L ++               +   ++F  
Sbjct: 1431 GGLSSTLVEK------MDEMGI-----LGNMPE-------------DNQLSLFDE 1461



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|291166154|gb|EFE28200.1| DNA polymerase III, alpha subunit, Gram-positive type [Filifactor
            alocis ATCC 35896]
          Length = 1407

 Score =  179 bits (455), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 145/888 (16%), Positives = 284/888 (31%), Gaps = 159/888 (17%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            SI +      G + L +L+S  ++     +  RI  S L E   EGL++ TGG +G I  
Sbjct: 579  SITIFAQNLVGLKNLYKLISFSHIK-HFYRIPRILKSELVE-HREGLLIGTGGENGEIFG 636

Query: 158  AFFFN-----SSQVAEKRLLTF-----------KKLFGDRLYVNLQRHRGYD-RYRESQV 200
                         V ++++  +           +  F  R           D R    ++
Sbjct: 637  GVREEVERGVDPSVVDEKIKFYDFAEVMPVSTYRSFFSARF-----DMNETDLRRINQRI 691

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
               A    +  VA  N  +L+ ED     +L            DR      +        
Sbjct: 692  YDAATQAGIMTVAVGNVHYLNPEDGIYRHILRYGQKKK----DDRIDQALYYRTTQEMLD 747

Query: 261  VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
               +     A E  V+     + +++   P+       E +  +++    LR       +
Sbjct: 748  EFEYLGKEVAYEIVVKNTNDFADLIEEMLPVPEGTFPPEIEGAKED----LREMCYEKAK 803

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                          +   +RLD EL+ I    ++  ++I    +  + ++   VG  RGS
Sbjct: 804  RIYGNPL------PEIVEKRLDRELSSIIGNGYAVMYIIAQKLVTKSLRDGYLVG-SRGS 856

Query: 381  GAGSVTAYALTITDIDPLR----------------------------------------- 399
               S  A    IT+++PL                                          
Sbjct: 857  VGSSFAATMSDITEVNPLPPHYICENEDCKYSEFMESGAFGSGVDMPNKLCPCCGRELKK 916

Query: 400  --FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
              F + FE FL  +    PD D++F  + +    ++V++ +G   V +  T G++  K A
Sbjct: 917  DGFDIPFEVFLGFEGDKEPDIDLNFAGEYQPNAHKFVEDLFGEGYVFRAGTIGTVAEKTA 976

Query: 458  LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
               V + L+                         +A+++  +  +               
Sbjct: 977  YGYVVKYLE---------------------ENNLVANNAEKQRLQ-------------LG 1002

Query: 518  LEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFD 572
              G+ R +  H  G+++  +   +    P+          +  T F+   I    ++K D
Sbjct: 1003 CTGIKRTSGQHPGGVMVCPKNKDIYDFTPVQYPANDTKCGVITTHFDYHSI-SGRILKLD 1061

Query: 573  FLGLKTLTLLQK----------SLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
             LG    ++++            +    +R + +  S    D   +  +    GTLGI +
Sbjct: 1062 ILGHDVPSIIRHLEDMTNVVATEIPLDDERVMSIFTSTDAIDCDLS-QIQCETGTLGIPE 1120

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
              +  ++  L    P    ++I +  L                N ++ + S    +  ++
Sbjct: 1121 FGTRFVQHMLMDTNPHTFAELIRISGLSHG-------TDVWVNNAQDLVRSNTVTLKDVI 1173

Query: 683  KETQGVIIY--QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
                 ++ Y  QE +          ++ +   L     + +                K  
Sbjct: 1174 STRDDIMNYLIQEGLPSKMSFKIMENVRKGKGLTEEQEECMISHQVPNWYITSCKKIKYM 1233

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYA-------------VISYQTAWMKTHYPVEF 787
              K  AV    +  + A +      A   A             +   + A M  +  ++ 
Sbjct: 1234 FPKAHAVAYVMMSFRIAYFKVYHKEAFYAACFSTKVDNFDVDLICRGKEAVMMAYQELKQ 1293

Query: 788  LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVG 846
               ++T +      + +   +  Q  +++    +       F V DN I   L +I G+G
Sbjct: 1294 KENNLTAKEMGFITVLELAYEMHQRGVKMNHVDIYKSDSKKFYVLDNEILPPLLSIPGLG 1353

Query: 847  TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
             T A  I E +    F SLEDF  R    K ++ V+E+L   G L   
Sbjct: 1354 LTVAEKIKEEAGKSEFISLEDFRIRT---KASKTVIETLRNHGCLQGL 1398



 Score = 75.6 bits (184), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 32/86 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+S S +EG LS   +L         AIAITD   + +  +    A   GI+ + 
Sbjct: 305 VELHAHTSMSSMEGLLSAKELLGAAKEFGHKAIAITDDAVVQAFPDAMGSAKKTGIKVLY 364

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +  +    +  +            
Sbjct: 365 GVEGHLVDDMSNILKEFNDKDLNQEF 390


>gi|50365104|ref|YP_053529.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
 gi|50363660|gb|AAT75645.1| DNA polymerase III alpha subunit [Mesoplasma florum L1]
          Length = 1493

 Score =  179 bits (455), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 136/941 (14%), Positives = 289/941 (30%), Gaps = 200/941 (21%)

Query: 69   PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            PII    D+   +     +           + +L    +G + + +LVS  +  +     
Sbjct: 611  PII-YDADLIKLEPENDKDNINLLRSRGAHVNVLAKNQQGLKDIFKLVSISHTDNFFNSP 669

Query: 129  VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ- 187
                    +      +++  G  +  +       + +  E+ +  +        Y+ +Q 
Sbjct: 670  KIFKEKLKEFKEKNNILIGAGCVNSEVFETARIGTDEKLEEIIPFYD-------YIEIQP 722

Query: 188  --------RHRGYDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
                         + +       ++++LA  + + LVAT+++ +   E  +  DV +   
Sbjct: 723  LSVYKNLINDNQLEEHELIDVIKKIIRLAKKYNVMLVATSDAHYTRPELKKIRDVYINAK 782

Query: 236  HSTVVSQKDRPRVTPDHYLKNRSEMVSI-------FSDLPEALENTVEIARRCSFILQVH 288
                           +  +    + +         F+ L E       +    + I ++ 
Sbjct: 783  GLGGSRHPLFSFRNKNKLIDYPDQYLRTTNEMLKEFAWLSEPALVQEMVITNTNKIAEMI 842

Query: 289  APILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVI 348
               +    +       +  +  L++K                    +    RL+ EL  I
Sbjct: 843  DSNIIVIKDGLFTPNIENVDTLLKDKCYETAHAMYGD------VLPEIVESRLEKELTSI 896

Query: 349  ARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------- 399
             +  F+  + I    ++ +  +   VG  RGS   S  A A  IT+++PL+         
Sbjct: 897  IKHGFAVVYWISHLLVERSNNDGYLVG-SRGSVGSSFVATASKITEVNPLKAHYRCLNCK 955

Query: 400  --------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRR 427
                                              + FE FL  D   +PD D++F  + +
Sbjct: 956  YSDFNTPIEIKCGYDLPEQNCPKCNEKLIGDGHDIPFETFLGFDGDKVPDIDLNFSGEYQ 1015

Query: 428  DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                 + +  +G   V +  T  ++  K A   V                          
Sbjct: 1016 PIAHNFTKEMFGENNVFRAGTISTVAEKTAFGYVKAFY---------------------- 1053

Query: 488  SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPM 545
                              P    +   ++ +EG+ R    H  GI+I   +  +    P+
Sbjct: 1054 --------EETGVLEEDMPRKIEIERQAKLVEGVKRTTGQHPGGIIILPKEFEIEDFSPV 1105

Query: 546  YRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
                         T F+   I    L+K D LG    T L+   D        V+   IP
Sbjct: 1106 NFPADDASSSWKTTHFDFHSIHD-NLLKMDILGHVDPTALRMLGDLT-----GVNPINIP 1159

Query: 603  FDDHETYHLLTT---------------KGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
             +D + Y L +                 G +G+ +  +  +R  L   +P    D++ + 
Sbjct: 1160 TNDPKVYSLFSNLSALNIKPEQINGETTGAIGLPEFGTGFVRSMLRETKPKTFADLVQIS 1219

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             L                N ++ I +    I  ++     +++Y   + Q     + + +
Sbjct: 1220 GLSHG-------TDVWLGNARDLIKNNTANISTVIGCRDDIMVYL--MGQGIDATTSFKI 1270

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
             E+    + + K+ K                + + +    +  ++      Y F K+HA 
Sbjct: 1271 MESVRKGQGLRKEWK-----------EIMLAHNVPEWYIESCLKI-----KYMFPKAHAT 1314

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------------------------- 800
            AY +++Y+ AW K +YP E+ A  +T   D  +                           
Sbjct: 1315 AYVLMAYRIAWYKIYYPAEYYATFLTNRADAFDLKTFLGGYNGVKEKLAELELRKNKKDK 1374

Query: 801  ---------KIKKFCQDARQFNIQIMPPSV-------NTPCVDFKVGDNRIYYSLAAIKG 844
                      + +   +     I++   +             D   G+  +Y     I  
Sbjct: 1375 MTTKELALMPVLEIGLEMFSRGIKMANLNFEKSLADKYIIEKDESTGEATLYPPFLVIDS 1434

Query: 845  VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            +G   A  I++A +++P  S++D  SR    +   ++ E L
Sbjct: 1435 LGDAVADSIIKARSERPLTSVKDLTSRTTITQTQMKIFEQL 1475



 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 8/99 (8%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG----- 66
           V L VH+  S ++G  S+   L  +      AIAITD  N+ +  +   +          
Sbjct: 345 VELHVHTKMSAMDGVSSIQEYLQMVDKWNWKAIAITDHINVQTFPDAYNELKKINKNKAE 404

Query: 67  ---IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
              ++ I G ++++  +++  +    K        +V+ 
Sbjct: 405 EDKLKLIYGLEMNMIEKEDYWIVKNPKGQKIRESKMVVF 443


>gi|225572667|ref|ZP_03781422.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM
            10507]
 gi|225039967|gb|EEG50213.1| hypothetical protein RUMHYD_00855 [Blautia hydrogenotrophica DSM
            10507]
          Length = 1464

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 152/909 (16%), Positives = 295/909 (32%), Gaps = 179/909 (19%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            ++D+ +     ++           ++L S+  G   L +LVS  +L     +  R+  S 
Sbjct: 609  NVDVLNCQGSVSENTVKKLPTYHAIILASSEAGRINLYKLVSLSHLK-YYNRRPRVPKSV 667

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------- 188
             ++   EGLI+ +   +G + +A   ++S     RL+ F        Y+ +Q        
Sbjct: 668  FEQ-HREGLIIGSACEAGELYQALLRDASPQEIARLVNFYD------YLEIQPLGNNKFM 720

Query: 189  ---------HRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
                     H   D +    ++V+L    + P+VAT +  F+  +D E +  ++      
Sbjct: 721  IADEKNDKVHSMEDLKEMNRKIVKLGEQFQKPVVATCDVHFMDPKD-EVYRRIIMSGKGF 779

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
              +         D           +  +         E     + +           I  
Sbjct: 780  GDA--------DDQAPLYLRTTEEMLEEFSYLGSEKAEEVVITNTLKIADMCDKVSPIHP 831

Query: 299  E-CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
            + C  + +  + +LR+           +             +RL  EL  I    ++  +
Sbjct: 832  DKCPPVIENSDQDLRDICYNKAHEIYGEPL------PPIVEERLKKELTSIISNGYAVMY 885

Query: 358  LIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------ 399
            +I    +  +  +   VG  RGS   S+ A    IT+++PL                   
Sbjct: 886  IIAQKLVWKSNDDGYLVG-SRGSVGSSLAATMSGITEVNPLPPHYVCPKCKYSDFDSEDV 944

Query: 400  ---------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                                       F + FE FL       PD D++F  + +    R
Sbjct: 945  KKFVGKVGCDMPDKVCPKCGTKLNKNGFDIPFETFLGFKGDKEPDIDLNFSGEYQAVAHR 1004

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            Y +  +G     +  T G+L  K A   V                               
Sbjct: 1005 YTEVIFGEGHTFKAGTIGTLAEKTAFGYV---------------------------KNYF 1037

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVR 550
             +  + +           +  + +   G+ R    H  GI+       + +  P+     
Sbjct: 1038 EEHGQPKR-------YCEINRLVKGCTGIRRTTGQHPGGIIVLPHGEEIEKFTPVQHPAN 1090

Query: 551  S---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
                D+  T F+   I    L+K D LG    T+++     + +     D   +P D+ E
Sbjct: 1091 DVNSDIITTHFDYHSI-DGNLLKLDILGHDDPTMIR-----MLEDLTGTDAKEVPLDNPE 1144

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
               L  +   LGI   +  G      G+     + +I ++   +P    ++V  +   +G
Sbjct: 1145 VMSLFASTKALGIEPKDIGGCPLGCLGIPEFGTDFVIGMLQDTKPTCFSDLVRISGLSHG 1204

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
                +     +    K T    I     +    +  G   S+A  +  ++ K    + + 
Sbjct: 1205 TNVWLGNAQELIRQGKATISTAICTRDDIMGYLINQGVESSQAFTIMESVRKGKGLKPE- 1263

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
                +      N +      +      K   Y F K+HAAAY +++Y+ AW K  YP+ +
Sbjct: 1264 ----WEETMKANHVPDWYIWSC-----KQISYMFPKAHAAAYVMMAYRIAWYKIFYPLAY 1314

Query: 788  LAASMTLEMDNVEK---------------------------------IKKFCQDARQFNI 814
             AA  ++   N                                      K  Q+      
Sbjct: 1315 YAAFFSIRATNFSYEVMCMGKEKLEYYMDEIHKKGDAATKKEQDMVKDMKIVQEMYARGF 1374

Query: 815  QIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
            + MP  +       F++ D ++  SL AI+G+G   A  ++ A+ +  F S +DF  R  
Sbjct: 1375 EFMPLDLYKAKAHRFQIIDGKLMPSLDAIEGLGDKAADAVVAAANEGTFLSKDDFRIRT- 1433

Query: 874  SKKLNRRVL 882
              K+++ V+
Sbjct: 1434 --KVSKTVI 1440



 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 4/90 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA----CAAGI 67
           + L  H+  S ++G      ++ +        IAITD   + +  E   +       A  
Sbjct: 351 IELHCHTKMSDMDGVTDAKELVKRAYEWGHKGIAITDHGVVQAFPEAFHETWNIPKDADF 410

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           + + G +  +       + N          
Sbjct: 411 KVLYGMEAYLVDDMKGMVVNGKGQSLQGSF 440


>gi|171778812|ref|ZP_02919874.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp.
            infantarius ATCC BAA-102]
 gi|171282458|gb|EDT47882.1| hypothetical protein STRINF_00733 [Streptococcus infantarius subsp.
            infantarius ATCC BAA-102]
          Length = 1464

 Score =  179 bits (453), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 135/972 (13%), Positives = 287/972 (29%), Gaps = 194/972 (19%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            L   M  N K+  +       V    + V    G + + +LVS
Sbjct: 585  FLKEARENH-------NLTNMMDLNTKLVAEDSYKKARVKHATIYVQNQTGLKNIFKLVS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +    +   RI  + L +   EGL++ T  S G +  A   +    A K    +   
Sbjct: 638  LSNVK-YFEGVARIPRTVL-DAHREGLLLGTACSEGEVFDAVLSSGVDAAVKVAKYYD-- 693

Query: 178  FGDRLYVNLQR--------------HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEE 223
                 ++ +                     R     ++++      P++AT N  ++  E
Sbjct: 694  -----FIEVMPPAIYAPLLAQGTIKDEEGIRQVIRDLLEVGRRLNKPVLATGNVHYIEPE 748

Query: 224  DYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
            D    ++++          +   R                 +++ +      E       
Sbjct: 749  DEIYREIIVRSLGQGAPINRPIGRGEDAQPAPLPKAHFRTTNEMLDEFAFLGEDVAYEIV 808

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK--GYHAQDYRQRL 341
            +   +         +               K+   +     Q A             +R+
Sbjct: 809  VKNTNDFADRFEEVEVVKKDLYTP---FLEKSEERVAEMTYQKAFEIYGNPLPDIVDRRI 865

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-- 399
            + EL  I    F+  +L     +  + K    VG  RGS   S  A  + IT+++P+   
Sbjct: 866  EKELTSILGNGFAVIYLASQMLVIRSNKRGYLVG-SRGSVGSSFVATMIGITEVNPMPPH 924

Query: 400  ---------------------------------------FSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL  D   +PD D+
Sbjct: 925  YVCPNCQHSKFITDGSVGSGYDLPDKDCPECGTRYKKDGHDIPFETFLGFDGDKVPDIDL 984

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D +      V++ +G +   +  T G++  + A   V +  +  Y           
Sbjct: 985  NFSGDDQPSAHLDVRDIFGEQYAFRAGTVGTVADRTAYGFV-KGYERDYG---------- 1033

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRP 538
                                          +  ++Q   G+ R    H  GIV       
Sbjct: 1034 -----------------------KMYPEAEVERLAQGAAGVKRTTGQHPGGIVVIPNYMD 1070

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T FN   I++  ++K D LG    T+++K      Q    
Sbjct: 1071 VYDFTPVQYPADDLSAEWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQDLSG 1124

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            +D   IP DD +   L +    LG+   Q+ +      +     + +  ++       P 
Sbjct: 1125 IDPKDIPADDPDVMALFSGTEVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVEET---HPT 1181

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                ++  +   +G +  +     +      T   +I     + +  + +G     A  +
Sbjct: 1182 TFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFTI 1241

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K +  ++  ++      A +        +     +     Y F K+HAAAY +++
Sbjct: 1242 MERVRKGMWLKISDEERNGYIEAMRENNVPDWYIESCGKI----KYMFPKAHAAAYVLMA 1297

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K HYP+ +  A  ++     +                                 
Sbjct: 1298 LRVAYFKVHYPIYYYCAYFSIRAKAFDIKTMSAGLDAVKERMAEISTKRKNNEASNVEID 1357

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +  +   +     +      +F +  + +     A+ G+G   A+ I++A 
Sbjct: 1358 LYTTLELVNEMLERGYKFGQLDLYRSDATEFIIDGDTLIPPFVAMDGLGENVAKQIVKAR 1417

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEK 917
             +  F S  +   R     ++  ++E       +D  G      L ++            
Sbjct: 1418 EEGEFLSKMELRKR---GGVSATLVEK------MDEMGI-----LGNMPE---------- 1453

Query: 918  NRTNKHENIFAH 929
               +   ++F  
Sbjct: 1454 ---DNQLSLFDD 1462



 Score = 88.7 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++  ++D  A     A+AITD  N+ S      +A   GI+ I 
Sbjct: 340 VEFHAHTNMSTMDALPTVEELIDTAAKWGHKAVAITDHCNVQSFPHGYHRARKNGIKAIF 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N           +V 
Sbjct: 400 GLEANIVEDKVPIAYNPQDIELNEATFVVF 429


>gi|288904428|ref|YP_003429649.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus UCN34]
 gi|306830461|ref|ZP_07463631.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
            gallolyticus TX20005]
 gi|325977425|ref|YP_004287141.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
            gallolyticus ATCC BAA-2069]
 gi|288731153|emb|CBI12701.1| DNA polymerase III (alpha subunit) [Streptococcus gallolyticus UCN34]
 gi|304427486|gb|EFM30588.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
            gallolyticus TX20005]
 gi|325177353|emb|CBZ47397.1| DNA polymerase III PolC [Streptococcus gallolyticus subsp.
            gallolyticus ATCC BAA-2069]
          Length = 1464

 Score =  179 bits (453), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 139/966 (14%), Positives = 302/966 (31%), Gaps = 182/966 (18%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            L   M  N K+  +       V    + V    G + + +LVS
Sbjct: 585  FLKEARENH-------NLTNMMDLNTKLVAEDSYKKARVKHATIYVQNQTGLKNIFKLVS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--K 175
               +    +   RI  + L +   EGL++ T  S G +  A   +    A K    +   
Sbjct: 638  LSNVK-YFEGVARIPRTVL-DAHREGLLLGTACSEGEVFDAVLSSGVDAAVKVAKYYDFI 695

Query: 176  KLFGDRLY--VNLQRHRGYDR---YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    LY  +  Q     +         ++++      P++AT N  ++  ED    ++
Sbjct: 696  EVMPPALYAPLLAQGTIKDEEGIRQVIRDLLEVGRRLNKPVLATGNVHYIEPEDEIYREI 755

Query: 231  LM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
            ++ ++     +++              ++   +    L E       +    ++ + V  
Sbjct: 756  IVRSLGQGAPINRPIGRGENAQPAPLPKAHFRTTNEMLDEFAF----LGEDVAYEIVVKN 811

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK--GYHAQDYRQRLDFELNV 347
                    +E + ++K+       K+   +     Q A              R++ EL  
Sbjct: 812  TNDFADRFEEVEVVKKDLYTPFLEKSEERVAEMTYQKAFEIYGNPLPDIVDLRIEKELTS 871

Query: 348  IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------- 399
            I    F+  +L     +  +      VG  RGS   S  A  + IT+++P+         
Sbjct: 872  ILGNGFAVIYLASQMLVIRSNDRGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPNC 930

Query: 400  ---------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDR 426
                                               + FE FL  D   +PD D++F  D 
Sbjct: 931  QHSEFITDGSVGSGYDLPDKDCPECGTRYKKDGHDIPFETFLGFDGDKVPDIDLNFSGDD 990

Query: 427  RDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHP 486
            +      V++ +G +   +  T G++  + A   V +  +  Y +     +         
Sbjct: 991  QPSAHLDVRDIFGEQYAFRAGTVGTVADRTAYGFV-KGYERDYGKFYPEAE--------- 1040

Query: 487  VSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVP 544
                                    +  ++Q   G+ R    H  GIV       +    P
Sbjct: 1041 ------------------------VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTP 1076

Query: 545  MYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLI 601
            +         +   T FN   I++  ++K D LG    T+++K      Q    +D   I
Sbjct: 1077 VQYPADDLSAEWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQDLSGIDPKDI 1130

Query: 602  PFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
            P DD +   L +    LG+   Q+ +      +     + +  ++       P     ++
Sbjct: 1131 PADDPDVMALFSGTEVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVEET---HPTTFAELL 1187

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGK 719
              +   +G +  +     +      T   +I     + +  + +G     A  +   + K
Sbjct: 1188 QLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRK 1247

Query: 720  KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
             +  ++  ++      A +        +     +     Y F K+HAAAY +++ + A+ 
Sbjct: 1248 GMWLKISDEERNGYIEAMRENNVPDWYIESCGKI----KYMFPKAHAAAYVLMALRVAYF 1303

Query: 780  KTHYPVEFLAASMTLEMDNVEKIKK----------------------------------- 804
            K HYP+ +  A  ++     +                                       
Sbjct: 1304 KVHYPIYYYCAYFSIRAKAFDIKTMSAGLDAVKERMADISNKRKNNEASNVEIDLYTTLE 1363

Query: 805  FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFD 863
               +  +   +     +      +F +  + +     A+ G+G   A+ I++A  +  F 
Sbjct: 1364 IVNEMLERGYKFGQLDLYRSDATEFIIDGDTLIPPFVAMDGLGENVAKQIVKAREEGEFL 1423

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKH 923
            S  +   R     ++  ++E       +D  G      L ++               +  
Sbjct: 1424 SKMELRKR---GGVSATLVEK------MDEMGI-----LGNMPE-------------DNQ 1456

Query: 924  ENIFAH 929
             ++F  
Sbjct: 1457 LSLFDD 1462



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++  ++D  A     A+AITD  N+ S      +A   GI+ I 
Sbjct: 340 VEFHAHTNMSTMDALPTVEELIDTAAKWGHKAVAITDHGNVQSFPHGYHRARKNGIKAIF 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N           +V 
Sbjct: 400 GLEANIVEDKVPIAYNPQDIELNEATYVVF 429


>gi|320547752|ref|ZP_08042036.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812]
 gi|320447512|gb|EFW88271.1| DNA polymerase III PolC [Streptococcus equinus ATCC 9812]
          Length = 1464

 Score =  178 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 136/924 (14%), Positives = 288/924 (31%), Gaps = 169/924 (18%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A         G  L   M  N K+  +       V    + V    G + + +LVS
Sbjct: 585  FLKEAREN-----HG--LTNMMDLNTKLVAEDSYKKARVKHATIYVQNQTGLKNIFKLVS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +    +   RI  + L +   EGL++ T  S G +  A   +    A +    +   
Sbjct: 638  LSNVK-YFEGVARIPRTVL-DAHREGLLLGTACSEGEVFDAVLTSGVDKAVEVAKYYD-- 693

Query: 178  FGDRLYVNLQR--------------HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEE 223
                 ++ +                     R     ++++      P++AT N  ++  E
Sbjct: 694  -----FIEVMPPAIYAPLLAQGTIKDEEGIRQVIRDLIEVGRRLNKPVLATGNVHYIEPE 748

Query: 224  DYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
            D    ++++    S          +      +      + F    E L+    +    ++
Sbjct: 749  DEIYREIIV---RSLGQGAPINRPIGRGEDAQPAPLPKAHFRTTNEMLDEFAFLGEDVAY 805

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK--GYHAQDYRQRL 341
             + V          +E + ++K+       K+   +     Q A             +R+
Sbjct: 806  EIVVKNTNDFAERFEEIEVVKKDLYTPFLEKSEERVAEMTYQKAFEIYGNPLPDIVDRRI 865

Query: 342  DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-- 399
            + EL  I    F+  +L     +  + K    VG  RGS   S  A  + IT+++P+   
Sbjct: 866  EKELTSILGNGFAVIYLASQMLVIRSNKRGYLVG-SRGSVGSSFVATMIGITEVNPMPPH 924

Query: 400  ---------------------------------------FSLLFERFLNPDRMSMPDFDI 420
                                                     + FE FL  D   +PD D+
Sbjct: 925  YVCPNCQHSEFITDGSVGSGYDLPNKDCPKCGTRYKKDGHDIPFETFLGFDGDKVPDIDL 984

Query: 421  DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
            +F  D +      V++ +G +   +  T G++  + A   V +  +  Y           
Sbjct: 985  NFSGDDQPSAHLDVRDIFGEQYAFRAGTVGTVADRTAYGFV-KGYERDYG---------- 1033

Query: 481  NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRP 538
                                          +  ++Q   G+ R    H  GIV       
Sbjct: 1034 -----------------------KMYPEAEVERLAQGAAGVKRTTGQHPGGIVVIPNYMD 1070

Query: 539  LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK 595
            +    P+         +   T FN   I++  ++K D LG    T+++K      Q    
Sbjct: 1071 VYDFTPVQYPADDLSAEWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK-----LQDLSG 1124

Query: 596  VDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
            +D   IP DD +   L +    LG+   Q+ +      +     + +  ++       P 
Sbjct: 1125 IDPKDIPADDPDVMALFSGTEVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVEET---HPT 1181

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                ++  +   +G +  +     +      T   +I     + +  + +G     A  +
Sbjct: 1182 TFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLDPKMAFTI 1241

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K    ++  ++      A ++       +     +     Y F K+HAAAY +++
Sbjct: 1242 MERVRKGRWLKISDEERNGYIQAMRDNNVPDWYIESCGKI----KYMFPKAHAAAYVLMA 1297

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----------------------------- 804
             + A+ K HYP+ +  A  ++     +                                 
Sbjct: 1298 LRVAYFKVHYPLYYYCAYFSIRAKAFDIKTMSTGLDAVKERMAEISTKRKNNEASNVEID 1357

Query: 805  ------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEAS 857
                     +  +   +     +      +F +  + +     A+ G+G   A+ I++A 
Sbjct: 1358 LYTTLELVNEMLERGFKFGQLDLYRSDATEFIIDGDTLIPPFVAMDGLGENVAKQIVKAR 1417

Query: 858  ADKPFDSLEDFCSR--VDSKKLNR 879
             +  F S  +   R  V +  +++
Sbjct: 1418 EEGEFLSKMELRKRGGVSATLVDK 1441



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++  ++D  A     A+AITD  N+ S      +A   GI+ I 
Sbjct: 340 VEFHAHTNMSTMDALPTVEELIDTAAKWGHKAVAITDHGNVQSFPHGYHRARKNGIKAIF 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N           +V 
Sbjct: 400 GLEANIVEDKVPIAYNPVDLELNEATYVVF 429


>gi|19548852|gb|AAL90823.1| polymerase III subunit alpha [Escherichia coli]
          Length = 328

 Score =  178 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 157/329 (47%), Positives = 226/329 (68%), Gaps = 13/329 (3%)

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA
Sbjct: 1   PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 60

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +RDVGR L  PY  VDR+ KLIP DP   +  +A   + +  E   AD  V  L+++++
Sbjct: 61  VIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMAR 119

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL
Sbjct: 120 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 179

Query: 577 KTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
           +TLT++  +L+ + +R  K      D++ IP DD +++ +L    T  +FQLES GM+  
Sbjct: 180 RTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 239

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKE 684
           ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E+I        H  + P+L+ 
Sbjct: 240 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEP 299

Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
           T G+I+YQEQVMQIAQ+LSGY+L  AD+L
Sbjct: 300 TYGIILYQEQVMQIAQVLSGYTLGGADML 328


>gi|325522049|gb|EGD00722.1| DNA polymerase III, alpha subunit [Burkholderia sp. TJI49]
          Length = 335

 Score =  178 bits (450), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 108/338 (31%), Positives = 175/338 (51%), Gaps = 12/338 (3%)

Query: 573 FLGLKTLTLLQKSLDFL-AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            L L  L++++++LD +  +RG   +L  IP +D  TY +L    ++G+FQ+ES      
Sbjct: 1   MLALGMLSMVRRALDMISEKRGETFELQDIPAEDKATYDMLCDGDSMGVFQVESRAQMSM 60

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVSIHPLIDPMLKETQGVI 689
           L  ++P C  D++  V++ RPGP+   +V+    R+ G E +      ++  LK T GV 
Sbjct: 61  LPRLRPQCFYDLVIEVAIVRPGPVQGGMVHPYLRRRQGLEPVTFPSDGMEKALKRTLGVP 120

Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IKEEMDKQKERFISGASKNGISKTIAVN 748
           I+QEQVMQ+A L +G+S  EAD LRRAM     K  ++   +R +SG  + G  +  A  
Sbjct: 121 IFQEQVMQVAMLAAGFSAGEADQLRRAMAAWKRKGGLEPYHDRLVSGMLERGYDREFAEA 180

Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
           IF  +  F +YGF +SHAA++A++ Y +AW++ H P  FLAA +  +        +  QD
Sbjct: 181 IFAQIKGFGEYGFPESHAASFALLVYSSAWLRRHEPAVFLAALLNSQPMGFYSPSQLLQD 240

Query: 809 ARQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARHIMEASADKPFDS 864
           AR+  ++++P  VN    D  +        +    + ++G+    A  I  A A +PF  
Sbjct: 241 ARRRGVEVLPVDVNVSTWDSVIEGPTTSAPVRLGFSLLRGMRADVAGRIELARAVRPFVD 300

Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCF-GYSRMQL 901
           + D   R    +L+R  L  L  A AL    G +R   
Sbjct: 301 VADLARRA---QLDRHDLLVLARANALRSLAGGNRRAA 335


>gi|19548804|gb|AAL90799.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548806|gb|AAL90800.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548808|gb|AAL90801.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548810|gb|AAL90802.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548820|gb|AAL90807.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548824|gb|AAL90809.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548828|gb|AAL90811.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548834|gb|AAL90814.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548836|gb|AAL90815.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548838|gb|AAL90816.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548840|gb|AAL90817.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548842|gb|AAL90818.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548844|gb|AAL90819.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548846|gb|AAL90820.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548848|gb|AAL90821.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548854|gb|AAL90824.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548856|gb|AAL90825.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548860|gb|AAL90827.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548862|gb|AAL90828.1| polymerase III subunit alpha [Escherichia fergusonii]
          Length = 328

 Score =  178 bits (450), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 157/329 (47%), Positives = 226/329 (68%), Gaps = 13/329 (3%)

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA
Sbjct: 1   PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 60

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +RDVGR L  PY  VDR+ KLIP DP   +  +A   + +  E   AD  V  L+++++
Sbjct: 61  VIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMAR 119

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL
Sbjct: 120 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 179

Query: 577 KTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
           +TLT++  +L+ + +R  K      D++ IP DD +++ +L    T  +FQLES GM+  
Sbjct: 180 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 239

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKE 684
           ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E+I        H  + P+L+ 
Sbjct: 240 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEP 299

Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
           T G+I+YQEQVMQIAQ+LSGY+L  AD+L
Sbjct: 300 TYGIILYQEQVMQIAQVLSGYTLGGADML 328


>gi|19548826|gb|AAL90810.1| polymerase III subunit alpha [Escherichia coli]
          Length = 328

 Score =  177 bits (449), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 157/329 (47%), Positives = 226/329 (68%), Gaps = 13/329 (3%)

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA
Sbjct: 1   PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 60

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +RDVGR L  PY  VDR+ KLIP DP   +  +A   + +  E   AD  V  L+++++
Sbjct: 61  VIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMAR 119

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL
Sbjct: 120 KLEGVTRNAGKHAGGVVIAPTQITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 179

Query: 577 KTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
           +TLT++  +L+ + +R  K      D++ IP DD +++ +L    T  +FQLES GM+  
Sbjct: 180 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 239

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKE 684
           ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E+I        H  + P+L+ 
Sbjct: 240 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEP 299

Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
           T G+I+YQEQVMQIAQ+LSGY+L  AD+L
Sbjct: 300 TYGIILYQEQVMQIAQVLSGYTLGGADML 328


>gi|19548830|gb|AAL90812.1| polymerase III subunit alpha [Escherichia coli]
 gi|19548832|gb|AAL90813.1| polymerase III subunit alpha [Escherichia coli]
          Length = 327

 Score =  177 bits (448), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 156/328 (47%), Positives = 225/328 (68%), Gaps = 13/328 (3%)

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA
Sbjct: 1   PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 60

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +RDVGR L  PY  VDR+ KLIP DP   +  +A   + +  E   AD  V  L+++++
Sbjct: 61  VIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMAR 119

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL
Sbjct: 120 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 179

Query: 577 KTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
           +TLT++  +L+ + +R  K      D++ IP DD +++ +L    T  +FQLES GM+  
Sbjct: 180 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 239

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKE 684
           ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E+I        H  + P+L+ 
Sbjct: 240 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEP 299

Query: 685 TQGVIIYQEQVMQIAQLLSGYSLSEADV 712
           T G+I+YQEQVMQIAQ+LSGY+L  AD+
Sbjct: 300 TYGIILYQEQVMQIAQVLSGYTLGGADM 327


>gi|330900333|gb|EGH31752.1| error-prone DNA polymerase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 180

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 78/208 (37%), Gaps = 31/208 (14%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +     +  L   S++S   GA S   + ++       A+AITD   L   +   Q + +
Sbjct: 1   MTSE--YAELHCLSNFSFQRGASSARELFERALRHGYKALAITDECTLAGIVRAWQASKS 58

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+  I+G ++ I+                  P +VLLV    GY+ L  L++      +
Sbjct: 59  TGLPLIVGSEMHIENG----------------PKVVLLVENQAGYEALCTLITVARRRAK 102

Query: 125 GKQSVRICLSWLQEIGTEGLIML-TGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
            K   R+      E   + L+ L      G                     ++ F +RL+
Sbjct: 103 -KGEYRVLREDF-EPAPDWLLALWLPDLDGDAQACLADGR---------WLRERFTERLW 151

Query: 184 VNLQRHRGY-DRYRESQVVQLAYTHELP 210
           + +  HRG  D  R + ++ LA +  +P
Sbjct: 152 LGVGLHRGPDDEQRLADLLALAQSLGIP 179


>gi|291563198|emb|CBL42014.1| DNA polymerase III catalytic subunit, PolC type [butyrate-producing
            bacterium SS3/4]
          Length = 1376

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 124/805 (15%), Positives = 245/805 (30%), Gaps = 139/805 (17%)

Query: 76   DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            ++D  +     +           +++L     G   L  LVS  +L     +  RI  S 
Sbjct: 585  NLDQLEEFSHVSDETIMKMPTYHVIILAKNDLGRVNLYRLVSWSHLK-YFSRRPRIPKSV 643

Query: 136  LQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY--- 192
            L +   EGLI+ +   +G + +A           +L+ F        Y+ +Q        
Sbjct: 644  LNQY-REGLIIGSACEAGELYQAILRGVPDAELAKLVKFYD------YLEIQPLGNDMFM 696

Query: 193  --DRY-----------RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
              D                ++V L      P+ AT +  F+  +D              +
Sbjct: 697  LRDEKSTVRTVDDLMDINRKIVSLGEQFNKPVCATCDVHFMDPDDAIYR---------KI 747

Query: 240  VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
            +      +   +           + ++      +        +  +          +  +
Sbjct: 748  LMSGMGFKDADEQAPLFLRTTEEMLAEFEYLGSDKCYEVVVTNTRMIADMCEPIAPVRPD 807

Query: 300  -CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
             C  +  + +  LRN           +         +    RL+ EL+ I    F+  ++
Sbjct: 808  KCPPVIDKSDETLRNICYNRAHEMYGENL------PKIVVDRLERELHSIISNGFAVMYI 861

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
            I    +  + ++   VG  RGS   S  A    IT+++PL                    
Sbjct: 862  IAQKLVWKSNEDGYLVG-SRGSVGSSFVATMSGITEVNPLSPHYYCPNCHYYDFDSEEVK 920

Query: 400  --------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
                                      F + FE FL       PD D++F  + +     Y
Sbjct: 921  KYGGMAGCDMPDKVCPECGHPMVKDGFDIPFETFLGFKGDKEPDIDLNFSGEYQSRAHDY 980

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIA 493
             +  +G  +  +  T G+L  K A   V                                
Sbjct: 981  TEVIFGKGQTFRAGTIGTLADKTAYGYV---------------------------KNYFE 1013

Query: 494  DDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVRS 551
            +    +           +  I Q   G+ R    H  GIV+      +    P+      
Sbjct: 1014 EHGERKR-------NCEINRIVQGCVGVRRTTGQHPGGIVVLPLGEMIYSFTPVQHPAND 1066

Query: 552  D--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
                 +T           L+K D LG    T+++   D      VK        D  E  
Sbjct: 1067 MTTKTITTHFDYHSIDHNLLKLDILGHDDPTMIRMLQDLTGLDPVKDIP----LDSREVM 1122

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             L  +   LGI   +  G +    G+     +  + ++   +P    ++V      +G +
Sbjct: 1123 SLFQSTDALGIKPEDIGGCKLGALGVPEFGTDFAMQMLIDTKPKYFSDLVRIAGLAHGTD 1182

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
              +     +    K T    I     + I  +  G     A  +  A+ K    + +   
Sbjct: 1183 VWLGNAQTLIQEGKATIQTAICTRDDIMIYLIQQGLEEGLAFTIMEAVRKGKGLKPE--- 1239

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
              +    +K+G+      +  ++      Y F K+HAAAY +++++ A+ K  YP+ + A
Sbjct: 1240 --WEEEMTKHGVPDWYIWSCKKI-----KYMFPKAHAAAYVMMAWRIAYCKVFYPLAYYA 1292

Query: 790  ASMTLEMDNV-EKIKKFCQDARQFN 813
            A  ++       +I    ++  +++
Sbjct: 1293 AFFSIRASAFSYEIMCLGREKLEYH 1317



 Score = 82.9 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQP 69
           V L  H+  S ++G   + +++ +      PA+AITD   + +  +    A   G   + 
Sbjct: 329 VELHCHTKMSDMDGVSEVKDLVKRAKKWGMPALAITDHGCVQAFPDA-NHALDKGDTFKV 387

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           + G +  +       + N          
Sbjct: 388 LYGVEGYLVDDMKEMVVNSRNQSLDGDY 415


>gi|302380708|ref|ZP_07269173.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
            magna ACS-171-V-Col3]
 gi|302311651|gb|EFK93667.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
            magna ACS-171-V-Col3]
          Length = 1421

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 141/904 (15%), Positives = 287/904 (31%), Gaps = 195/904 (21%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +      G + L +LV+   L     +   I  S L +   EGL++ +G  +G + +A 
Sbjct: 593  TIYAKNLIGLKNLYKLVTASNLK-YFSREGGIPKSELNKR-REGLVIGSGNENGELIKAI 650

Query: 160  FF-NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVVQLA 204
                S +  ++ +  +        ++ +Q    YD                   ++  L+
Sbjct: 651  LSFESDEKIDEIISRYD-------FLEVQPPLYYDGVKSKSMSFNLRSCEELTRKLYNLS 703

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
              H   LVA + + +  +EDY   ++++      +  +K          L  R+    + 
Sbjct: 704  LKHNKLLVADSYAKYFEKEDYIFRNIILEGQPRKIYGEKF-------PTLFFRTTDEMMN 756

Query: 265  SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
              +        EI    +  +      +    +     + +  + ELR            
Sbjct: 757  EFVFLEKNVAEEIVIDNTIKISEMFEEIKPIPDGTFPPVIEGSDTELREMTYKKARSIYG 816

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                      +    RL+ EL+ I    ++  ++I    ++ + ++   VG  RGS   S
Sbjct: 817  DDL------PEIVESRLERELSSIISNGYAVLYIIAQKLVKKSNEDGYLVG-SRGSVGSS 869

Query: 385  VTAYALTITDIDPLR-----------------------------------------FSLL 403
              A    IT+++PL                                           ++ 
Sbjct: 870  FVATMADITEVNPLIPHYICENCKHSEFIHDENIGSGVDLDDKICPECGKPLKKEGHNIP 929

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D    PD D++F  + +  V +Y +  +G  +V +  T G++  K A   + +
Sbjct: 930  FEVFLGFDGDKEPDIDLNFAGEYQPTVHKYTEELFGEGKVFRAGTIGTISDKTAYGYIKK 989

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +                           ++S  +  +             + + G+ R
Sbjct: 990  YFE---------------------DKNEYVNNSEIKYLQ-------------RGILGVKR 1015

Query: 524  HASTHAAGIVIGDRP--LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKT 578
             +  H  G++I  R   +    P+         D+  T FN K I    ++K D LG   
Sbjct: 1016 TSGQHPGGVMIVPRDKDIEDFCPVQHPADDVNSDIITTHFNYKSI-SGRILKLDLLGHDV 1074

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIP-FDDHETYHLLTTKGTLG--------IFQLESSGMR 629
             T+++   D      + + +          +   L  +  +         I +  ++ +R
Sbjct: 1075 PTIIKMLSDMTGVDPLTIPMDDKETMSIFSSIDALHFEELIDGLDIGTLGIPEFGTNFVR 1134

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
              L    P    +++ +  L   G    +    +              +   +     ++
Sbjct: 1135 GMLRDTTPKTFSELVRISGLSH-GTNVWLNNAQDLIRDGVV------ELKDTICTRDDIM 1187

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            IY   + +  +    + + E     R +               ++   +NG+      + 
Sbjct: 1188 IYL--INKGLEKKKSFKIMETVRKNRVLDDD-----------TLNYMIQNGVPDWYIESC 1234

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------- 799
                 K  +Y F K+HA AY ++SY+ A+ K HYP  F +   T+++ +           
Sbjct: 1235 -----KTIEYLFPKAHAVAYVMMSYRIAYFKVHYPEAFYSTFFTIKLQDYPGDVIVRGLS 1289

Query: 800  ---------------------------EKIKKFCQDARQFNIQIMPPSVNTP-CVDFKV- 830
                                         + +  ++     I+     +       FKV 
Sbjct: 1290 AIREEMQSLKDKYKESNSKMTAKDSNKYSVLEVAEEMYCRGIKQSRVDLYKSDKARFKVL 1349

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                I     A++GV    +  I E      F S +DF  R    K+N+  LE L   G 
Sbjct: 1350 EKGFIQPPFNALEGVSDANSIAIYEEIQKGDFISKQDFADRT---KVNKTALEILENHGV 1406

Query: 891  LDCF 894
            LD  
Sbjct: 1407 LDGL 1410



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 34/80 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L ++S  S L+G + L+     +      A+ +TD + +    +        G++P+ 
Sbjct: 317 VELHMYSQMSQLDGFIDLDECCKTLKKWGHSALGLTDKSVVQGYPQLYDACSNNGLKPLF 376

Query: 72  GCQLDIDMQDNLKMTNQGKT 91
           G +  I   D   +TN   +
Sbjct: 377 GMEAKILEDDFRIITNPYDS 396


>gi|134291535|ref|YP_001115304.1| phosphotransferase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134134724|gb|ABO59049.1| PHP C-terminal domain protein [Burkholderia vietnamiensis G4]
          Length = 208

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 16/183 (8%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P++  LQV S +S L GA      + + A     AIAITD  +L   +    +A AA + 
Sbjct: 10  PAYAELQVASDFSFLHGASRAEEYVARAAQLGYSAIAITDECSLAGVVRAHVEAKAANMP 69

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIG    +   D                    L    +GY  L E +S   +  + K +
Sbjct: 70  LIIGSHFRLTAADGSPALA-----------FTALAMNRDGYGNLCEFISLGRMRGK-KGT 117

Query: 129 VRICLSWLQ--EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            R+    L+  E     L  L    +  I    F  + Q  + ++  F ++FGDR +V L
Sbjct: 118 YRLAPLDLEHPEAPYTHLRGLPDCIA--ILSPDFPANEQRLDAQVEWFARVFGDRAWVAL 175

Query: 187 QRH 189
             H
Sbjct: 176 TLH 178


>gi|229829203|ref|ZP_04455272.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM
            14600]
 gi|229792366|gb|EEP28480.1| hypothetical protein GCWU000342_01290 [Shuttleworthia satelles DSM
            14600]
          Length = 1532

 Score =  175 bits (443), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 132/874 (15%), Positives = 267/874 (30%), Gaps = 164/874 (18%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
              +L+     G   L +L S  +L    ++  +I  S +++   EGLI+ +   +G + +
Sbjct: 691  HCILIARNDIGRINLYKLTSLSHLR-FFQRQAKIPKSLVEKY-REGLIIGSACEAGELFQ 748

Query: 158  AFFFNSSQVAEKRLLTFKKLF------GDRLYVNLQRHRGYDRY----RESQVVQLAYTH 207
            A           R+++F           +R  +                  ++V+L    
Sbjct: 749  ALEGGRPPQEISRIVSFYDYLEIQPIGNNRFLLEADNDNIQTEEDLRDFNRRIVRLGEDF 808

Query: 208  ELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL 267
              P+ AT +  FL+ ED              ++      +               +  + 
Sbjct: 809  HKPVCATGDVHFLNPEDEIYR---------RIIQVGKGFKDADHQPPLFLHTTEEMLEEF 859

Query: 268  PEALENTVEIARRCSFILQVHAPILPRFIEKE-CDDIQKEEENELRNKAVAGLEVRLAQG 326
                 +        +                + C  +    +  LR            + 
Sbjct: 860  SYLGMDKAREVVITNTNRIADMCERIHPTRPDKCPPVIANSDQMLRTICHNRAHELYGK- 918

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                        +R++ ELN I    ++  ++I    +  + ++   VG  RGS   S  
Sbjct: 919  -----KLPAIVEERMERELNSIIGNGYAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFA 972

Query: 387  AYALTITDIDPLR---------------------------------------------FS 401
            AY   IT+++ L+                                             F 
Sbjct: 973  AYLAGITEVNSLQAHYLCPDCKFVDFDSDQVKAFAGRSGCDMPDRKCPRCGADLMKLGFD 1032

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            + FE FL       PD D++F  + + +  +Y +  +G  +  +  T G+L  K A   +
Sbjct: 1033 IPFETFLGFKGNKEPDIDLNFSGEYQAKAHKYTEVIFGEGQTFKAGTIGTLADKTAYGYI 1092

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
                +                                   R        +  I Q   G+
Sbjct: 1093 KNYYE----------------------------------ERGIHKRSCEIDRIVQGCVGI 1118

Query: 522  YRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGL 576
             R    H  GIV       ++   P+         D+  T F+   I    L+K D LG 
Sbjct: 1119 RRTTGQHPGGIVVLPVGEEINSFTPVQHPADDMTSDIITTHFDYHKI-DGNLLKLDILGH 1177

Query: 577  KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQ 636
               T+++K  D    R      + IP DD     L     +LGI + +      ++  + 
Sbjct: 1178 DDPTMIRKLEDLTGLRA-----TDIPLDDKAVMGLFMGTDSLGIPEGDQLWGGTSMGTLG 1232

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRK---NGKEKIVSIHPLIDPMLKETQGVIIYQE 693
                      + + R                 +G +  +     +      T    I   
Sbjct: 1233 IPEF-GTDFAMGMLRDAKPKEFSDLIRISGLSHGTDVWLGNAKDLIQQGIATISTAICCR 1291

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKK--IKEEMDKQKERFISGASKNGISKTIAVNIFE 751
              + +  +  G    E+  +   + K    K ++     ++ +   ++G+      +  +
Sbjct: 1292 DDIMVYLINQGMDSEESFTIMERVRKGLVAKGKVADDWAKWTADMKEHGVPDWYIGSCEK 1351

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE---------------- 795
            +      Y F K+HAAAY +++++ A+ K +YP+ + AA  ++                 
Sbjct: 1352 I-----KYMFPKAHAAAYVMMAWRVAYCKVYYPLAYYAAFFSIRATAFSYEIMCRGRNYL 1406

Query: 796  -----------------MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYY 837
                               +  +  +  Q+      + +P  +       FK+ D ++  
Sbjct: 1407 ETILAEYDKRRDQLSNKEQDTYRDMRIVQEMYVRGYEFLPLDLYQSDARYFKIVDGKLLP 1466

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              A+I G+G   A  +  A+A   F S++D   R
Sbjct: 1467 PFASIDGMGDKAAETLAIAAAQGKFLSMDDLKER 1500



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-SQKACAAGIQPI 70
           V L  H+  S ++G  ++ +I+ +       A+AITD   + +  +   +       + I
Sbjct: 413 VELHCHTKMSDMDGVSAVEDIVRQARHFGHKALAITDHGVVQAFPDADHEIGKDPDFKVI 472

Query: 71  IGCQLDIDMQDNLKMTN 87
            G +  +       +T+
Sbjct: 473 YGMEAYLVDDTKTVVTD 489


>gi|306832698|ref|ZP_07465835.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338]
 gi|304425154|gb|EFM28283.1| DNA polymerase III PolC [Streptococcus bovis ATCC 700338]
          Length = 1464

 Score =  175 bits (443), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 132/947 (13%), Positives = 290/947 (30%), Gaps = 185/947 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K+  +       V    + V    G + + +LVS   +    +   RI  + L +   
Sbjct: 602  NTKLVAEDSYKKARVKHATIYVQNQTGLKNIFKLVSLSNVK-YFEGVARIPRTVL-DAHR 659

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGL++ T  S G +  A   +    A K    +        ++ +               
Sbjct: 660  EGLLLGTACSEGEVFDAVLSSGVDAAVKVAKYYD-------FIEVMPPVLYAPLLAQGTI 712

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRP 246
                  R     ++++      P++AT N  ++  ED    ++++ ++     +++    
Sbjct: 713  KDEEGIRQVIRDLLEVGRRLNKPVLATGNVHYIEPEDEIYREIIVRSLGQGAPINRPIGR 772

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                      ++   +    L E      ++A +               +E    D+   
Sbjct: 773  GENAQPAPLPKAHFRTTNEMLDEFAFLGEDVAYQIVVKNTNDFADRFEEVEVVKKDLYTP 832

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
               +   +       R  +  I           R++ EL  I    F+  +L     +  
Sbjct: 833  FLEKSEERVAEMTYQRAFE--IYGNPLPDIIDLRIEKELTSILGNGFAVIYLASQMLVIR 890

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            +      VG  RGS   S  A  + IT+++P+                            
Sbjct: 891  SNDRGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPNCQHSEFITDGSVGSGYDLPD 949

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL  D   +PD D++F  D +      V++ +G +   +
Sbjct: 950  KDCPECGTRYKKDGHDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDIFGEQYAFR 1009

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  + A   V +  +  Y +     +                            
Sbjct: 1010 AGTVGTVADRTAYGFV-KGYERDYGKFYPEAE---------------------------- 1040

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNM 560
                 +  ++Q   G+ R    H  GIV       +    P+         +   T FN 
Sbjct: 1041 -----VERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDLSAEWQTTHFNF 1095

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
              I++  ++K D LG    T+++K      Q    +D   IP DD +   L +    LG+
Sbjct: 1096 HDIDE-NVLKLDILGHDDPTMIRK-----LQDLSGIDPKDIPADDPDVMALFSGTEVLGV 1149

Query: 621  F--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
               Q+ +      +     + +  ++       P     ++  +   +G +  +     +
Sbjct: 1150 TPEQIGTPTGMLGIPEFGTNFVRGMVEET---HPTTFAELLQLSGLSHGTDVWLGNAQDL 1206

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
                  T   +I     + +  + +G     A  +   + K +  ++  ++      A +
Sbjct: 1207 IKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGMWLKISDEERNGYIEAMR 1266

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
                    +     +     Y F K+HAAAY +++ + A+ K HYP+ +  A  ++    
Sbjct: 1267 ENNVPDWYIESCGKI----KYMFPKAHAAAYVLMALRVAYFKVHYPIYYYCAYFSIRAKA 1322

Query: 799  VEKIKK-----------------------------------FCQDARQFNIQIMPPSVNT 823
             +                                          +  +   +     +  
Sbjct: 1323 FDIKTMSAGLDAVKERMADISNKRKNNEASNVEIDLYTTLEIVNEMLERGYKFGQLDLYR 1382

Query: 824  P-CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
               ++F +  + +     A+ G+G   A+ I++A  +  F S  +   R     ++  ++
Sbjct: 1383 SDAIEFIIDGDTLIPPFVAMDGLGENVAKQIVKARTEGEFLSKMELRKR---GGVSATLV 1439

Query: 883  ESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
            E       +D  G      L ++               +   ++F  
Sbjct: 1440 EK------MDEMGI-----LGNMPE-------------DNQLSLFDD 1462



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++  ++D  A     A+AITD  N+ S      +A   GI+ I 
Sbjct: 340 VEFHAHTNMSTMDALPTVEELIDTAAKWGHKAVAITDHGNVQSFPHGYHRARKNGIKAIF 399

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N           +V 
Sbjct: 400 GLEANIVEDKVPIAYNPQDIELNEATYVVF 429


>gi|19548818|gb|AAL90806.1| polymerase III subunit alpha [Escherichia coli]
          Length = 324

 Score =  175 bits (443), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 154/324 (47%), Positives = 222/324 (68%), Gaps = 13/324 (4%)

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA
Sbjct: 1   PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 60

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +RDVGR L  PY  VDR+ KLIP DP   +  +A   + +  E   AD  V  L+++++
Sbjct: 61  VIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMAR 119

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL
Sbjct: 120 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 179

Query: 577 KTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
           +TLT++  +L+ + +R  K      D++ IP DD +++ +L    T  +FQLES GM+  
Sbjct: 180 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 239

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKE 684
           ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E+I        H  + P+L+ 
Sbjct: 240 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEP 299

Query: 685 TQGVIIYQEQVMQIAQLLSGYSLS 708
           T G+I+YQEQVMQIAQ+LSGY+L 
Sbjct: 300 TYGIILYQEQVMQIAQVLSGYTLG 323


>gi|309807955|ref|ZP_07701883.1| PHP domain protein [Lactobacillus iners LactinV 01V1-a]
 gi|308168806|gb|EFO70896.1| PHP domain protein [Lactobacillus iners LactinV 01V1-a]
          Length = 335

 Score =  175 bits (443), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 137/347 (39%), Gaps = 20/347 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           LQ  SS++LL+  +S+  ++         AIA+TD N  +  ++F + A + GI+P++G 
Sbjct: 6   LQNISSFTLLKSPISVEQLIGSAKKRGYKAIALTDINFTYGLIDFYKIAKSEGIKPLLGM 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL-LDQGKQSVRIC 132
           QL I+          G         ++++     GYQ ++ L S + L  + GK+ + + 
Sbjct: 66  QLRIN----------GLINENQNFDLIVIAKNNVGYQNIMRLSSAVNLITENGKKEIDVT 115

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD--RLYVNLQRHR 190
           L+ LQ+      I+ T      + R  F+++  +    +    K+      LY+ +   +
Sbjct: 116 LNKLQKYLGNLHIITTANQHSEL-RDLFYHNFDLMPDYIRKLAKILPQSSNLYLGVFADK 174

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
               Y  S V  L+    L LVA  +  ++   D    +VL ++  +  +       +  
Sbjct: 175 SESNYINS-VKSLSEQFNLKLVAVEDVQYIDPHDVFLQEVLQSIDDNQSIRDGYELTLKH 233

Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                 +++     S     +   +   ++      V        + K            
Sbjct: 234 VGNHYLKTKDKLCESYNSLGILEALRNTKQVFDDSNVEIKFTMPQLPKFIQHKFDTSYEF 293

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYF 357
           L + A+ GL+ +  +  I        Y  RL +EL +I  M F+ YF
Sbjct: 294 LHHLAMTGLQAKFNKHDI-----PAKYLNRLKYELKIIDEMGFNDYF 335


>gi|163791589|ref|ZP_02185990.1| DNA polymerase III, alpha subunit, Gram-positive type [Carnobacterium
            sp. AT7]
 gi|159873138|gb|EDP67241.1| DNA polymerase III, alpha subunit, Gram-positive type [Carnobacterium
            sp. AT7]
          Length = 1395

 Score =  174 bits (442), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 133/811 (16%), Positives = 267/811 (32%), Gaps = 146/811 (18%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +    Q N                  ++ +T  G + L +L+S
Sbjct: 585  FLKEAREEH-------DIHFQDQLNEHTGEGDAYKRARPFHATIIATTQTGLKNLFKLIS 637

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT--FK 175
               ++D   ++ R+  S L ++  EGLI+ T  S G +  A        A+ +     + 
Sbjct: 638  -SSMVDYFYRTARLPRSELIKL-REGLIIGTACSQGEVFEAMMQKGFDEAKNKAKFYDYI 695

Query: 176  KLFGDRLYV-----NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
            ++    +Y       L +           +V++     +P+VAT N  +L+ ED     +
Sbjct: 696  EVMPKEVYAPLIEQELVKDESDLEEIIRNLVKIGEDLNIPVVATGNVHYLNPEDSIYRKI 755

Query: 231  LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            L+                 P+ + +  +EM+  FS L E     + + +  + I+ +   
Sbjct: 756  LINSQGGA---NPLNRSELPEVHFRTTTEMLETFSFLGEETAQQI-VVKNTNKIVDMVDD 811

Query: 291  ILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIAR 350
             +            +  E+E+R  +                       +R++ ELN I  
Sbjct: 812  AITPIKTDLYTPKIEGSEDEIRQLSYDEAHRLYGNPL------PDIIEKRIEKELNSIIG 865

Query: 351  MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------- 399
              FS  +LI    +  +  +   VG  RGS   S  A    IT+++P+            
Sbjct: 866  NGFSVIYLISQKLVHKSMSDGYLVG-SRGSVGSSFVATMTGITEVNPMPPHYSCPKCQYS 924

Query: 400  ------------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDE 429
                                            + FE FL      +PD D++F  D + +
Sbjct: 925  EFFTDGSVGSGYDLPDKACPECGARLHKDGHDIPFETFLGFYGDKVPDIDLNFSGDYQSK 984

Query: 430  VIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL 489
               Y +  +G E V +  T G++  + A   V         + D    L   +       
Sbjct: 985  AHNYTKELFGEEYVFRAGTIGTVADRTAFGYVKGY------ERDNNLNLRAAE------- 1031

Query: 490  QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYR 547
                                 +  +++   G+ R    H  GI  +     +    P+  
Sbjct: 1032 ---------------------IDRLAKGSTGVKRTTGQHPGGIIVIPDYMDVYDFTPIQF 1070

Query: 548  DV---RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
                  S+   T F+   I    ++K D LG    T+++   D          +     +
Sbjct: 1071 PADAQDSEWKTTHFDFHSIHD-NVLKLDILGHDDPTVIRMLQDLSG--VDPKTIPTDDPE 1127

Query: 605  DHETY-----------HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              + +            + +  GTLGI +  +  +R  LE   P    +++ +  L    
Sbjct: 1128 VMKIFGGTEVLGVTPEQIQSKTGTLGIPEFGTRFVRGMLEETLPTTFAELLQISGLSHG- 1186

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N +E I      +  ++     +++Y         + +G     A  +
Sbjct: 1187 ------TDVWLGNAEELIRVNDIPLSEVIGCRDDIMVYL--------IHNGMEDGLAFKI 1232

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
              ++ K      D     +        I +    +  ++      Y F K+HAAAY +++
Sbjct: 1233 MESVRKGKGIPDD-----WQKAMRDENIPEWYIDSCLKI-----KYMFPKAHAAAYVLMA 1282

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
             + A+ K H+P+ + AA  ++  D+ + +  
Sbjct: 1283 LRVAYYKVHFPILYYAAYFSVRADDFDLVAM 1313



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/312 (16%), Positives = 99/312 (31%), Gaps = 24/312 (7%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA---LEFSQKACAAGIQ 68
           V L +HS+ S ++   ++ +++++ A     A+AITD    F A    +        GI+
Sbjct: 340 VELHLHSNMSQMDATNTVTDLVNQAAKWGHKAVAITDH---FGAQSFPDAFHAGQKNGIK 396

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG----YQRLIELVSRMYLLDQ 124
            + G + +I         N           +V  V T  G    Y  +IEL      +  
Sbjct: 397 ILYGIEANIVDDGVPIAYNPKHIELTDATYVVFDVET-TGLSAVYNSIIELS----AVKM 451

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            K ++        + G   L   T   +G  D     + S+  E+ L  FK+  GD   +
Sbjct: 452 HKGNIIESFEQFIDPGHP-LSQTTINLTGITDEMVQGSKSE--EEVLTLFKEFAGDS--I 506

Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            +  +  +D    +        H +P  A N  +   E     H    +   +T+  +  
Sbjct: 507 LVAHNASFDMGFLNTSNA---KHNIPD-AENPVIDTLELSRFLHPQFKSHRLNTLAKKYG 562

Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                    + +      +     +      +I  +             +        I 
Sbjct: 563 VNLEQHHRAIFDAETTGHLCWVFLKEAREEHDIHFQDQLNEHTGEGDAYKRARPFHATII 622

Query: 305 KEEENELRNKAV 316
              +  L+N   
Sbjct: 623 ATTQTGLKNLFK 634


>gi|169824428|ref|YP_001692039.1| DNA polymerase III subunit alpha [Finegoldia magna ATCC 29328]
 gi|167831233|dbj|BAG08149.1| DNA polymerase III alpha subunit [Finegoldia magna ATCC 29328]
          Length = 1421

 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 141/904 (15%), Positives = 286/904 (31%), Gaps = 195/904 (21%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +      G + L +LV+   L     +   I  S L +   EGL++ +G  +G + +A 
Sbjct: 593  TIYAKNLIGLKNLYKLVTASNLK-YFSREGGIPKSELNKR-REGLVIGSGNENGELIKAI 650

Query: 160  FF-NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVVQLA 204
                S +  ++ +  +        ++ +Q    YD                   ++  L+
Sbjct: 651  LSFESDEKIDEIISRYD-------FLEVQPPLYYDGVKSKSMSFNLRSCEELTRKLYDLS 703

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
              H   LVA + + +  +EDY   ++++      +  +K          L  R+    + 
Sbjct: 704  LKHNKLLVADSYAKYFEKEDYIFRNIILEGQPRKIYGEKF-------PTLFFRTTDEMMN 756

Query: 265  SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
                       EI    +  +      +    +     + +  + ELR            
Sbjct: 757  EFGFLEKNVAEEIVIDNTIKISEMLEEIKPIPDGTFPPVIEGSDTELREMTYKKARSIYG 816

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                      +    RL+ EL+ I    ++  ++I    ++ + ++   VG  RGS   S
Sbjct: 817  DDL------PEIVESRLERELSSIISNGYAVLYIIAQKLVKKSNEDGYLVG-SRGSVGSS 869

Query: 385  VTAYALTITDIDPLR-----------------------------------------FSLL 403
              A    IT+++PL                                           ++ 
Sbjct: 870  FVATMADITEVNPLIPHYICENCKHSEFIHDENIGSGVDLDDKICPVCGKPLKKEGHNIP 929

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D    PD D++F  + +  V +Y +  +G  +V +  T G++  K A   + +
Sbjct: 930  FEVFLGFDGDKEPDIDLNFAGEYQPTVHKYTEELFGEGKVFRAGTIGTISDKTAYGYIKK 989

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +                           ++S  +  +             + + G+ R
Sbjct: 990  YFE---------------------DKNEYVNNSEIKYLQ-------------RGILGVKR 1015

Query: 524  HASTHAAGIVIGDRP--LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKT 578
             +  H  G++I  R   +    P+         D+  T FN K I    ++K D LG   
Sbjct: 1016 TSGQHPGGVMIVPRDKDIEDFCPVQHPADDVNSDIITTHFNYKSI-SGRILKLDLLGHDV 1074

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIP-FDDHETYHLLTTKGTLG--------IFQLESSGMR 629
             T+++   D      + + +          +   L  +  +         I +  ++ +R
Sbjct: 1075 PTIIKMLSDMTGVDPLTIPMDDKETMSIFSSIDALHFEELIDGLDIGTLGIPEFGTNFVR 1134

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
              L    P    +++ +  L   G    +    +              +   +     ++
Sbjct: 1135 GMLRDTTPKTFSELVRISGLSH-GTNVWLNNAQDLIRDGVV------ELKDTICTRDDIM 1187

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            IY   + +  +    + + E     R +               ++   +NG+      + 
Sbjct: 1188 IYL--INKGLEKKKSFKIMETVRKNRVLDDD-----------TLNYMIQNGVPDWYIESC 1234

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------- 799
                 K  +Y F K+HA AY ++SY+ A+ K HYP  F +   T+++ +           
Sbjct: 1235 -----KTIEYLFPKAHAVAYVMMSYRIAYFKVHYPEAFYSTFFTIKLQDYPGDVIVRGLS 1289

Query: 800  ---------------------------EKIKKFCQDARQFNIQIMPPSVNTP-CVDFKV- 830
                                         + +  ++     I+     +       FKV 
Sbjct: 1290 AIREEMQYLKDKYKESNSKMTAKDSNKYSVLEVAEEMYCRGIKQSRVDLYKSDKARFKVL 1349

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                I     A++GV    +  I E      F S +DF  R    K+N+  LE L   G 
Sbjct: 1350 EKGFIQPPFNALEGVSDANSIAIFEEIQKGDFISKQDFAVRT---KVNKTALEILENHGV 1406

Query: 891  LDCF 894
            LD  
Sbjct: 1407 LDGL 1410



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 34/80 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L ++S  S L+G + L+     +      A+ +TD + +    +        G++P+ 
Sbjct: 317 VELHMYSQMSQLDGFIDLDECCKTLKKWGHSALGLTDKSVVQGYPQLYDACSNNGLKPLF 376

Query: 72  GCQLDIDMQDNLKMTNQGKT 91
           G +  I   D   +TN   +
Sbjct: 377 GMEAKILEDDFRIITNPYDS 396


>gi|303233818|ref|ZP_07320472.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
            magna BVS033A4]
 gi|302495252|gb|EFL55004.1| DNA polymerase III, alpha subunit, Gram-positive type [Finegoldia
            magna BVS033A4]
          Length = 1421

 Score =  174 bits (441), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 141/904 (15%), Positives = 287/904 (31%), Gaps = 195/904 (21%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
             +      G + L +LV+   L     +   I  S L +   EGL++ +G  +G + +A 
Sbjct: 593  TIYAKNLIGLKNLYQLVTASNLK-YFSREGGIPKSELNKR-REGLVIGSGNENGELIKAI 650

Query: 160  FF-NSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD--------------RYRESQVVQLA 204
                S +  ++ +  +        ++ +Q    YD                   ++  L+
Sbjct: 651  LSFESDEKIDEIISRYD-------FLEVQPPLYYDGVKSKSMSFNLRSCEELTRKLYNLS 703

Query: 205  YTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIF 264
              H   LVA + + +  +EDY   ++++      +  +K          L  R+    + 
Sbjct: 704  LKHNKLLVADSYAKYFEKEDYIFRNIILEGQPRKIYGEKF-------PTLFFRTTDEMMN 756

Query: 265  SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
              +        EI    +  +      +    +     + +  + ELR            
Sbjct: 757  EFVFLEKNVAEEIVIDNTIKISEMLEEIKPIPDGTFPPVIEGSDTELREMTYKKARSIYG 816

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
                      +    RL+ EL+ I    ++  ++I    ++ + ++   VG  RGS   S
Sbjct: 817  DDL------PEIVESRLERELSSIISNGYAVLYIIAQKLVKKSNEDGYLVG-SRGSVGSS 869

Query: 385  VTAYALTITDIDPLR-----------------------------------------FSLL 403
              A    IT+++PL                                           ++ 
Sbjct: 870  FVATMADITEVNPLIPHYICENCKHSEFIHDENIGSGVDLDDKICPECGKPLKKEGHNIP 929

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            FE FL  D    PD D++F  + +  V +Y +  +G  +V +  T G++  K A   + +
Sbjct: 930  FEVFLGFDGDKEPDIDLNFAGEYQPTVHKYTEELFGEGKVFRAGTIGTISDKTAYGYIKK 989

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              +                           ++S  +  +             + + G+ R
Sbjct: 990  YFE---------------------DKNEYVNNSEIKYLQ-------------RGILGVKR 1015

Query: 524  HASTHAAGIVIGDRP--LSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKT 578
             +  H  G++I  R   +    P+         D+  T FN K I    ++K D LG   
Sbjct: 1016 TSGQHPGGVMIVPRDKDIEDFCPVQHPADDVNSDIITTHFNYKSI-SGRILKLDLLGHDV 1074

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIP-FDDHETYHLLTTKGTLG--------IFQLESSGMR 629
             T+++   D      + + +          +   L  +  +         I +  ++ +R
Sbjct: 1075 PTIIKMLSDMTGVDPLTIPMDDKETMSIFSSIDALHFEELIDGLDIGTLGIPEFGTNFVR 1134

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
              L    P    +++ +  L   G    +    +              +   +     ++
Sbjct: 1135 GMLRDTTPKTFSELVRISGLSH-GTNVWLNNAQDLIRDGVV------ELKDTICTRDDIM 1187

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            IY   + +  +    + + E     R +               ++   +NG+      + 
Sbjct: 1188 IYL--INKGLEKKKSFKIMETVRKNRVLDDD-----------TLNYMIQNGVPDWYIESC 1234

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------- 799
                 K  +Y F K+HA AY ++SY+ A+ K HYP  F +   T+++ +           
Sbjct: 1235 -----KTIEYLFPKAHAVAYVMMSYRIAYFKVHYPEAFYSTFFTIKLQDYPGDVIVRGLS 1289

Query: 800  ---------------------------EKIKKFCQDARQFNIQIMPPSVNTP-CVDFKV- 830
                                         + +  ++     I+     +       FKV 
Sbjct: 1290 AIREEMQSLKDKYKESNSKMTAKDSNKYSVLEVAEEMYCRGIKQSRVDLYKSDKARFKVL 1349

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
                I     A++GV    +  I E      F S +DF  R    K+N+  LE L   G 
Sbjct: 1350 EKGFIQPPFNALEGVSDANSIAIYEEIQKGDFISKQDFADRT---KVNKTALEILENHGV 1406

Query: 891  LDCF 894
            LD  
Sbjct: 1407 LDGL 1410



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 34/80 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L ++S  S L+G + L+     +      A+ +TD + +    +        G++P+ 
Sbjct: 317 VELHMYSQMSQLDGFIDLDECCKTLKKWGHSALGLTDKSVVQGYPQLYDACSNNGLKPLF 376

Query: 72  GCQLDIDMQDNLKMTNQGKT 91
           G +  I   D   +TN   +
Sbjct: 377 GMEAKILEDDFRIITNPYDS 396


>gi|83319984|ref|YP_424323.1| DNA polymerase III, alpha subunit [Mycoplasma capricolum subsp.
            capricolum ATCC 27343]
 gi|83283870|gb|ABC01802.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            capricolum subsp. capricolum ATCC 27343]
          Length = 1479

 Score =  174 bits (440), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 146/911 (16%), Positives = 298/911 (32%), Gaps = 199/911 (21%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE-IGTEGLIMLTGGSSG 153
                  +LV    G + L +LV++ +  +    S +I  S L E      L+  +   + 
Sbjct: 628  KGFHTNILVKNQTGLKELYKLVTKSHTTN-FYSSPKIFKSDLIEVKKNNNLLFGSSCVNS 686

Query: 154  PIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR---------HRGYD----RYRESQV 200
             I      ++ +  ++ +  +        Y+ +Q          +   D    +   + +
Sbjct: 687  EIFELARTSTLENLKQAISFYD-------YIEIQPISVYKNLLQNDSLDLDQLKKIITNI 739

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-----HSTVVSQKDRPRVTPDHYLK 255
            + +A      +VA+++  + + E  +  +V +           +    ++ +  PD YL+
Sbjct: 740  ISIARQENKLIVASSDCHYTNPELKQIREVYINAKGLGGIRHPLFDFNNKVKDYPDQYLR 799

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
              +EM+  FS L +       +    + I ++    +    +          + +LR+K 
Sbjct: 800  TTNEMLEEFSWLEDENLIYEIVVINSNKINEMIDVNVIPIKDGLFTPKIANVDEKLRDKC 859

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
                +    +             +RL+ EL  I +  F+  + I    ++ +  +   VG
Sbjct: 860  YQTAKQMYGENL------PDIVEKRLEKELGSITKHGFAIVYWISHLLVKQSYDDGYLVG 913

Query: 376  PGRGSGAGSVTAYALTITDIDPLR------------------------------------ 399
              RGS   S  A    IT+++PL+                                    
Sbjct: 914  -SRGSVGSSFVATMAQITEVNPLKAHYRCLNCKYSDFDTDPTYKCGYDLPTKKCPNCNEK 972

Query: 400  -----FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +++   + +  +G   V +  T  ++  
Sbjct: 973  LIGDGHDIPFETFLGFDGDKVPDIDLNFSGEYQNQAHNFTKKMFGENNVFRAGTISTVAE 1032

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V                                +  R        P    +  +
Sbjct: 1033 KTAFGYV---------------------------KTYFEETKRDASL----PRKTEINRL 1061

Query: 515  SQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLI 569
            ++  +G+ R    H  GI+I   +  +    P+             T F+   I    L+
Sbjct: 1062 AKLAQGVKRTTGQHPGGIIILPNEYEIEDFTPVNYPADDLSSTWKTTHFDFHSIHD-NLL 1120

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGT------------ 617
            K D LG    T L+   D        +D   IP DD   Y L ++               
Sbjct: 1121 KMDILGHDDPTALRMLRDLTN-----IDPITIPTDDKNVYSLFSSLQALNLTSDKINDEI 1175

Query: 618  ---LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
               +GI +  +  +R  L+  +P    D++ +  L          V+             
Sbjct: 1176 TGAIGIPEFGTGFVRNMLKETKPKTFADLVQISGLSH-----GTDVWLGNAR-------- 1222

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
              LI         VI  ++ +M     + G   S A ++  ++ K    + +     +I 
Sbjct: 1223 -DLIKDNKANISTVIGCRDDIMVYLINM-GLESSLAFMIMESVRKGKGLKKE-----WID 1275

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               K+ I      +  ++      Y F K+HA AY +++Y+ AW K +YP E+ A  ++ 
Sbjct: 1276 IMKKHNIPDWYIDSCLKI-----KYMFPKAHATAYVLMAYRIAWYKIYYPTEYYATYLST 1330

Query: 795  EMDNVEKIKKFC-----------------------------QDARQFNIQIMPPSVNTPC 825
            + D  +                                   +   +  +++   ++    
Sbjct: 1331 KADVFDLKTALGGYEAVLLKLKSQQQKVKNGEKLSKKEEDLEVVYEVLLEMFARNIKFSN 1390

Query: 826  VDFK-----------VGDNR--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            +DF+           + DN   I      I  +G   A  I+ A   KP  S+ D  +R 
Sbjct: 1391 IDFEKSEATKFKVDILEDNTKIIIPPFNVIDSLGEAVALSIINARNTKPITSVNDLKNRT 1450

Query: 873  DSKKLNRRVLE 883
             + +   ++ E
Sbjct: 1451 QTTQTQIKIFE 1461



 Score = 64.4 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG----- 66
           V L  H+  S+++G     + L+ I++    AIA TD  N+ +  +  +   +       
Sbjct: 338 VELHAHTKMSVMDGVSDPTDYLELISSWNHKAIAFTDHTNVQAFPDIYKALNSVNKKRID 397

Query: 67  ---IQPIIGCQLDIDMQD 81
              I+ I G ++++   D
Sbjct: 398 QEKIKAIYGLEINMLNND 415


>gi|329117787|ref|ZP_08246504.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            parauberis NCFD 2020]
 gi|326908192|gb|EGE55106.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            parauberis NCFD 2020]
          Length = 1465

 Score =  174 bits (440), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 126/897 (14%), Positives = 272/897 (30%), Gaps = 174/897 (19%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N K+  +       V    + V    G + + +LVS   ++   +   RI  + L +   
Sbjct: 603  NTKLVAEDSYKKARVKHATIYVQNQVGLKNMFKLVSLSNVV-YFEGVPRIPRTILDQY-R 660

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ----------RHRG 191
            EGL++ +  S G +           A +    +        ++ +           R   
Sbjct: 661  EGLLLGSACSEGEVFDTVLNKGVDAAVEVGKYYD-------FIEIMPPAIYQPLIARELI 713

Query: 192  YDRY----RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL---------MAVAHST 238
             D+         ++++      P++ T N  ++  ED    +++         +      
Sbjct: 714  KDQEGIHQIIRDLIEVGARLNKPVLVTGNVHYIEPEDEIYREIIVRSLGQGAIINRTIGR 773

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  V+  +  +  ++    +       
Sbjct: 774  GEGAQPAPLPQAHFRTTNEMLDEMAFLGEDLAYQVVVQNTQDFADRIEEVEVVKGDLYTP 833

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              +  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 834  FIEKAEETVAELTYQKAFE----------IYGNPLPDIIDLRIEKELTSILGNGFAVIYL 883

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +  + +    VG  RGS   S  A  + IT+++P+                    
Sbjct: 884  ASQMLVNRSNERGYLVG-SRGSVGSSFVATMIGITEVNPMPPHYVCPKCQRSEFITDGSV 942

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  D +      V++ 
Sbjct: 943  GSGYDLPDKDCPDCGTKYQKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVRDI 1002

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSR 497
            +G E   +  T G++  K A   V +  +  + +  R  +                    
Sbjct: 1003 FGAEYAFRAGTVGTVADKTAYGFV-KGYERDFGKFYRDAE-------------------- 1041

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---D 552
                         +  +++   G+ R    H  GIV       +    P+          
Sbjct: 1042 -------------VDRLAKGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQFPAEDVSAS 1088

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
               T FN   I++  ++K D LG    T+++K  D        +D   I  DD     L 
Sbjct: 1089 WQTTHFNFHDIDE-NVLKLDILGHDDPTMIKKLEDLS-----GIDAKTIQADDPGVMALF 1142

Query: 613  TTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +    LG+   Q+ +      +       +  ++      RP     ++  +   +G + 
Sbjct: 1143 SGTEILGVTPEQIGTPTGMLGIPEFGTSFVRGMVNET---RPTTFAELLQLSGLSHGTDV 1199

Query: 671  IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
             +     +      T   +I     + +  + +G     A  +   + K +  ++ +++ 
Sbjct: 1200 WLGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGMWLKISEEER 1259

Query: 731  RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
                 A +        +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A
Sbjct: 1260 NSYIQAMRKNNVPDWYIESCGKI----KYMFPKAHAAAYVLMALRVAYFKVHHPLMYYCA 1315

Query: 791  SMTLEMDNVEKIKK-----------------------------------FCQDARQFNIQ 815
              ++     E                                          +  +   +
Sbjct: 1316 YFSIRAKAFELKTMSGGLKAVKARMEDIQIKRKNNEVTNVENDLFTTLEIVNEMLERGYK 1375

Query: 816  IMPPSVNT-PCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
                 +     ++F++  + +     A++G+G   A+ I+ A  +  F S  +   R
Sbjct: 1376 FGKLDLYRSEAIEFQIDGDTLIPPFVAMEGLGENVAKQIVRARQEGEFLSKMELRKR 1432



 Score = 87.9 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 38/97 (39%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +      V    H++ S ++   ++ +++D  A     A+AITD  N+ S      +A  
Sbjct: 334 MPADKKRVEFHAHTNMSTMDALPTVESLIDTAAKWGHKAVAITDHGNVQSFPHGYHRARK 393

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGI+ I G + +I         +           +V 
Sbjct: 394 AGIKAIFGLEANIVEDKVPISYDPVDLDLHESTYVVF 430


>gi|304439997|ref|ZP_07399890.1| DNA polymerase III PolC [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371489|gb|EFM25102.1| DNA polymerase III PolC [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 1403

 Score =  174 bits (440), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 128/902 (14%), Positives = 294/902 (32%), Gaps = 192/902 (21%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
              +V T EG + L +LVS  ++ +      ++  +   +   +G+++ +G S G +  A 
Sbjct: 582  TAIVQTQEGLKNLYKLVSASHM-EYFNIEAKVPKTIFNKY-RKGILLGSGTSKGELWNAI 639

Query: 160  FFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY----------DRY----RESQVVQLAY 205
            +F         + ++        Y+ +Q               D+        +++ L  
Sbjct: 640  YFGKPHEKLLEIASYYD------YLEIQPIGNNLNYVVSEKLKDKEDLININKKILALGD 693

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
                P+VAT +  +L      +  +++              ++    Y +       +  
Sbjct: 694  ELNKPVVATGDVYYLYPHQDLSRRIVL---SGVTGPVNPEVKIPNTLYFRTTD---QMLD 747

Query: 266  DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
            +     +   E+    S  +      +    +       +  E  L+            +
Sbjct: 748  EFDYLGDRCEEVVITNSNKIADMVDDIKPLPDGTFPPYIEGSEEMLKKITFDRAHSIYGE 807

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                     +   +RLD ELN I    ++  ++I    ++ +  +   VG  RGS   S 
Sbjct: 808  DL------PEIVEKRLDRELNSIIGNGYAVLYIIAEKLVKKSNSDGYLVG-SRGSVGSSF 860

Query: 386  TAYALTITDIDPLR-----------------------------------------FSLLF 404
             A    IT+++PL                                           ++ F
Sbjct: 861  AATMAGITEVNPLPPHYVCPKCKYSEFVDEKLVGSGVDLERKNCPVCGTELNRDGHNIPF 920

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  +    PD D++F  + +    +Y +  +G   V +  T G++    A R V   
Sbjct: 921  EVFLGFEGDKEPDIDLNFAGEYQPVAHKYTEELFGEGYVFRAGTIGTVAENTAYRIVKNY 980

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
             +                                            +  +++++ G+ R 
Sbjct: 981  YK------------------------------------DEIVPPVEIDRLAKEITGVKRT 1004

Query: 525  ASTHAAGIVIGDR--PLSQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
            +  H  G++I  +   +    P+        S +  T F+  ++    ++K D LG    
Sbjct: 1005 SGQHPGGVMIVPKTSSIYDFSPIQYPADKKSSGVITTHFDYNFL-HGKILKLDILGHDGP 1063

Query: 580  TLLQ----------KSLDFLAQRGVKVDLSLIPFD-DHETYHLLTTKGTLGIFQLESSGM 628
            T+++          + +    +R + +  S      + E Y      GTLGI +  +  +
Sbjct: 1064 TIIKMLEDLTGLKSEDIYLDDKRTMSLFNSSEELKMNKEIYE--CETGTLGIPEFGTDFV 1121

Query: 629  RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
            ++ L   +P    +++ +  L                N ++ +      +  ++   + +
Sbjct: 1122 KRMLIKTKPSTFSELVQISGLSHG-------TDVWTNNAEDLVDQGLAKLQDVISTREDI 1174

Query: 689  IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
            ++Y  Q               A      + K      ++          K  +       
Sbjct: 1175 MVYLIQAGA--------ENKMAFFTMEKVRKGKGLTDEQ-----REIMEKLPLPSWYIGA 1221

Query: 749  IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------- 800
              ++      Y F K+HA AY ++S++ A+ K +YP+E+ A   T ++ + +        
Sbjct: 1222 CEKI-----KYMFPKAHAVAYVMLSFRVAYYKLNYPLEYYATYFTNKLTDFDIETISKGV 1276

Query: 801  -----------------KIKKFCQDARQFNIQIMPPSVNTPCVD--------FKVGDNRI 835
                             + +K  ++  +  +++    +    +D        F + D  I
Sbjct: 1277 GAMKEKLNELLQIKNPSQKEKGQRNTLEMALEMYSRGIEFKFIDIYKSQAKTFVIEDGAI 1336

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFG 895
                 A+ G+G   A  I+E+S +  + S+EDF ++  +    + ++E L      +   
Sbjct: 1337 RVPFMAVPGLGEAIANSIVESSKENKYISVEDFINKTGA---TKAIVEMLRENNCFEGMQ 1393

Query: 896  YS 897
             +
Sbjct: 1394 EN 1395



 Score = 64.4 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 30/86 (34%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L++H+  S + G                 A+AITD +++         + + GI+ I 
Sbjct: 308 VELRLHTKMSTMSGITDFEEFAKFAKDLGHSALAITDVSDVQGFTNAMDASKSTGIKAIY 367

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G  + +       + N     +    
Sbjct: 368 GLDMRLVDDTMGIVENFEGKNYNQKF 393


>gi|227486439|ref|ZP_03916755.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
 gi|227235620|gb|EEI85635.1| DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172]
          Length = 1463

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 139/899 (15%), Positives = 286/899 (31%), Gaps = 163/899 (18%)

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            +++    ++            S +       G + L +L+S   +        R  +S L
Sbjct: 616  LNLSKINRLKTNYPKAKHETFSALAFAKDKTGLKNLYKLISESRMNYMANGEARTPMSVL 675

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQ-VAEKRLL--TFKKLFGDRLYVNLQRHRGYD 193
            ++   EGL++ TGG+ G +      + S+   +K L    F ++    ++++       D
Sbjct: 676  EKY-REGLVLGTGGAEGMLFEYILGDRSEMQIKKVLDLFDFYQVEPVSMFLDKVESGKID 734

Query: 194  -----RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRV 248
                 +    +++         + AT    +L   DY+  +V   +   +    K+   +
Sbjct: 735  SLAQVKEINQKIIDFGEERGKLVAATGGVRYLDPGDYKLRNV---LKKGSFFFYKENRPL 791

Query: 249  TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEE 308
                         S   D   A E  +   ++    L+   PI       +        E
Sbjct: 792  YYLRTTDEMLGEFSYLGDTK-AYELVIRNPKKIVAGLEDIRPIPHGTFPPKIAG----SE 846

Query: 309  NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAK 368
              LR+                     +  + RLD EL+ I    ++  ++I    ++ + 
Sbjct: 847  EMLRDTCFKKAHEIYGDPL------PKIVQDRLDRELHSIISNGYAVLYIIAQKLVKKSN 900

Query: 369  KNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------------- 399
            ++   VG  RGS   S  A    IT+++PL                              
Sbjct: 901  EDGYLVG-SRGSVGSSFAATMADITEVNPLSPHYICPSCKHSEFFEEDLLGSGIDYPDKD 959

Query: 400  ------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
                         ++ FE FL  +    PD D++F  + +  + +Y +  +G  +V +  
Sbjct: 960  CPVCGTPMHKDGHNIPFEVFLGFEGDKEPDIDLNFAGEYQPTIHKYTEVLFGEGKVFRAG 1019

Query: 448  TFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPS 507
            T G +Q   A   + + +                                     L +  
Sbjct: 1020 TIGKIQDNTAFGYIKKYM-------------------------------EENNLNLTNAQ 1048

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMYRDVRS---DLPVTQFNMKW 562
            V +L    + L+ + R    H  G+++    +    + P+             T F  + 
Sbjct: 1049 VRKLQ---RGLKDVKRSTGQHPGGLIVVPDDIEVFDICPIQYPADDPASGNKTTHFPYRV 1105

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
            +E+  L+K D LG    ++++   D      +K+               +  K  + IF 
Sbjct: 1106 MEET-LLKLDLLGHDVPSVIRHLQDLTGTDPLKIK--------------MDDKDVMKIFS 1150

Query: 623  LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI--HPLIDP 680
                   +            I    + +  G + +       +  +   +S   +  ++ 
Sbjct: 1151 CTEPLKIKHDFSNNDIGTLGIPEFGTNFVRGMLKDTYPKKFSEMARISGLSHGTNVWLNN 1210

Query: 681  MLKETQ-GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
                 +     + E +     +++       D  +  M  +   +     E  I    +N
Sbjct: 1211 AQDIIKSNTAGFNEIISTRDDIMNALIQEGLDKKKSFMIMEKVRKGKGLSEEEIDYMREN 1270

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
            G+      +  ++      Y F K+HA AY ++SY+ A+ K +YP  F A+  + ++ + 
Sbjct: 1271 GVKDWYIDSCLKI-----AYLFPKAHAVAYCLMSYRIAYYKVYYPEAFYASYFSSKLGDF 1325

Query: 800  EKIKKFC--------------------------------QDARQFNIQIMPPSVNTPCV- 826
                                                   ++     I+I    +      
Sbjct: 1326 TYSTIISGLESVQMALNAYKEMFNISKRDQDLRTVLEVAEEMHAREIKISKADIYESDAT 1385

Query: 827  DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
             F + D  I   LAA+  V    A+ I+E  A   F S+ED  SR     +N+  L+SL
Sbjct: 1386 KFLIKDGAILPPLAAVDDVSEAMAKDIVEERAKGDFISIEDLTSRTS---VNKNALKSL 1441



 Score = 42.5 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 38/87 (43%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L++HS Y+ L+G +   ++L  +       I ITDT NL             GI+ + G
Sbjct: 357 ELELHSKYTNLDGFVDDGDLLPVLKEWGWDTIGITDTENLQVLPYVYDTYKKNGIRVLNG 416

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSI 99
            +L +   D   +TN      PT  ++
Sbjct: 417 AELLLVEDDLRILTNLSGKDLPTFKNL 443


>gi|315282169|ref|ZP_07870636.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            marthii FSL S4-120]
 gi|313614186|gb|EFR87863.1| DNA polymerase III, alpha subunit, Gram-positive type [Listeria
            marthii FSL S4-120]
          Length = 1367

 Score =  173 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 134/795 (16%), Positives = 251/795 (31%), Gaps = 140/795 (17%)

Query: 74   QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
             +D     N  M               +   TA G + L +L++   + +   +  RI  
Sbjct: 595  DIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYFYRVPRIPR 653

Query: 134  SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NL 186
            S L+++  EGLI+ T  S G +  A      Q AEK    +   ++    +Y       L
Sbjct: 654  SQLKKL-REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIEREL 712

Query: 187  QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRP 246
             R           +V++      P+VAT N  +      + +  ++  +           
Sbjct: 713  VRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDP-VDKIYRKILIHSQGGANPLNRAE 771

Query: 247  RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                     +       F    +A E  V         ++   PI       + D     
Sbjct: 772  LPDVHFRTTDEMLKEFAFLGEEKAKEIVVTNPNVVVDWMEDLKPIKDELYTPKIDG---- 827

Query: 307  EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
             E+E+R+ + A       +         +    RL+ EL  I    F+  +LI    ++ 
Sbjct: 828  AEDEVRDMSYAMAHQLYGENL------PEIVEARLEKELKSIIGHGFAVIYLISHKLVKK 881

Query: 367  AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
            +  +   VG  RGS   S  A    IT+++PL                            
Sbjct: 882  SLVDGYLVG-SRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDGSIGSGFDLPD 940

Query: 400  --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                            + FE FL      +PD D++F  D +     Y +  +G + V +
Sbjct: 941  KDCPHCGTAYRKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFR 1000

Query: 446  IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
              T G++  K A   V R  +   +   R  +                            
Sbjct: 1001 AGTIGTVAEKTAFGYV-RNYERDMNMTIRGAE---------------------------- 1031

Query: 506  PSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDV---RSDLPVTQFNM 560
                 +  +     G+ R    H  GI  +     +    P+        S+   T F+ 
Sbjct: 1032 -----IDRLVAGCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATDSEWKTTHFDF 1086

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY----------- 609
              I    ++K D LG    T ++   D          +     D  + +           
Sbjct: 1087 HSIHD-NVLKLDILGHDDPTAIRMLQDLSG--IDPKTIPTDDPDVMKLFGSTESLGVKPA 1143

Query: 610  HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKE 669
             + +  GTLGI +  +  +RQ LE  +P    +++ +  L                N +E
Sbjct: 1144 DIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHG-------TDVWLGNAEE 1196

Query: 670  KIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
             I +    +  ++     ++++         +  G   S A  +  ++ K      + ++
Sbjct: 1197 LIKNKTCELPDVIGCRDDIMVFL--------IYQGLESSLAFKIMESVRKGKGLTDEMEE 1248

Query: 730  ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
                +               +    K   Y F K+HAAAY +++ + A+ K H+P+ F A
Sbjct: 1249 AMMANK----------VPLWYIESCKKIKYMFPKAHAAAYVLMAVRIAYFKVHHPLFFYA 1298

Query: 790  ASMTLEMDNVEKIKK 804
               T+  D+ +    
Sbjct: 1299 TYFTVRADDFDLTSM 1313



 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 31/86 (36%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++ +  + A     AIAITD +   S  E        G++ I 
Sbjct: 341 AELHLHSPMSQMDATSSVDALFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G + ++         N          
Sbjct: 401 GIEANLIDDGVPIAYNDQHIALQDAT 426


>gi|19548814|gb|AAL90804.1| polymerase III subunit alpha [Escherichia coli]
          Length = 323

 Score =  173 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 153/324 (47%), Positives = 221/324 (68%), Gaps = 13/324 (4%)

Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
            F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA +
Sbjct: 1   EFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVI 60

Query: 459 RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
           RDVGR L  PY  VDR+ KLIP DP   +  +A   + +  E   AD  V  L+++++KL
Sbjct: 61  RDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKL 119

Query: 519 EGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT 578
           EG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+T
Sbjct: 120 EGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRT 179

Query: 579 LTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
           LT++  +L+ + +R  K      D++ IP DD +++ +L    T  +FQLES GM+  ++
Sbjct: 180 LTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIK 239

Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQ 686
            +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E+I        H  + P+L+ T 
Sbjct: 240 RLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTY 299

Query: 687 GVIIYQEQVMQIAQLLSGYSLSEA 710
           G+I+YQEQVMQIAQ+LSGY+L  A
Sbjct: 300 GIILYQEQVMQIAQVLSGYTLGGA 323


>gi|284931104|gb|ADC31042.1| DNA polymerase III alpha subunit polC/Gram positive-type [Mycoplasma
            gallisepticum str. F]
          Length = 1494

 Score =  173 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 136/942 (14%), Positives = 301/942 (31%), Gaps = 210/942 (22%)

Query: 63   CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI---VLLVSTAEGYQRLIELVSRM 119
             AA ++        I+ +DNL    Q          +   ++    A+G + L +LVS  
Sbjct: 614  KAANLK--------INDEDNLDQITQSNENLFNRIRLRKAIVYAKNAQGLKALYKLVSLA 665

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT------ 173
                Q   S ++  S L++   + LI  +   +G I  A  +++++   K +        
Sbjct: 666  STK-QFYGSPKLFWSDLEKYQNDLLI-SSHPINGHIVHAAKYDTNENLRKLIKKHSFVLV 723

Query: 174  -FKKLFGDRLY---VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
                LF   LY   + L           ++++ +    ++    ++ + +L +E    +D
Sbjct: 724  PLPSLFKQDLYKKNIELTHVHDL----INRIISICEQEKILYTFSSAAHYLKQEQKRFYD 779

Query: 230  VLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL--- 285
             L+ A      +       ++ +  + +     +       +     EI  +  +     
Sbjct: 780  CLITAEITGKKLHHFYDRDLSTNQNVPDLHIRKNNEVYHDFSFIQDQEILEKLIYRNGEK 839

Query: 286  ---QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
                 +   L  F +K      +  +++L        +                 + R++
Sbjct: 840  IANLFNDEGLLPFPKKLHPPKIEGSDDKLIELVWNKAKELFGD------EIDPIIKSRIE 893

Query: 343  FELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--- 399
            +ELN I +  +   + +    ++ +  +   VG  RGS   S+ A    I++++PL+   
Sbjct: 894  YELNAIIKNGYGIIYWLAHLLVKKSNDDGYLVG-SRGSVGSSIVALLAGISEVNPLQPYY 952

Query: 400  --------------------------------------FSLLFERFLNPDRMSMPDFDID 421
                                                   ++ F  F+       PD D++
Sbjct: 953  YCKKCKKTKFVDNVDDGHDLVNKPCEFLDCDGEMRGEGHNIPFASFMGFKGEKTPDIDLN 1012

Query: 422  FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
            F    + +   YV+  +G     +  T  ++Q K A +                      
Sbjct: 1013 FSSFYQAKAHDYVRELFGESHTTRCGTISTMQDKTAYK---------------------- 1050

Query: 482  DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--L 539
              A       I ++   R A             + ++  + R    H  GI++  +   +
Sbjct: 1051 -IAKDYLEITIGEEESERLAG----------WYASEMSEIKRTTGQHPGGILVFPKDKEI 1099

Query: 540  SQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
                P+             + F  +++    L+K D L  +  T+L+   +         
Sbjct: 1100 EDFCPVNYPADDKSSKWKTSHFKFEYLHDT-LLKLDILSQEDPTILKYLYEIT--NVKPE 1156

Query: 597  DLSLIPFDDHETYHLLTTKGTLG-------------IFQLESSGMRQALEGMQPDCIEDI 643
            ++          ++L      +              I +  +   R+ L+  +P  + D+
Sbjct: 1157 EIPNNDPKVLSLFNLDHCLENVNNNPILKDSTGALGIPEFGTKITREILKIAKPASVADL 1216

Query: 644  IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLS 703
            I +  L                N  + IV  H  ++ ++     ++ Y   +        
Sbjct: 1217 IRVSGLSHG-------TDVWTNNAADLIVDKHYKLNEVIACRDDIMTYLSSL-------- 1261

Query: 704  GYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
            G     A  +   + K  K + +     +     +  +S+    +  ++      Y F K
Sbjct: 1262 GIENQIAFNIMEDVRKGKKLKPE-----YEKIMQEFNVSQDYIDSCNKI-----KYMFPK 1311

Query: 764  SHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------------------- 800
            +HA AY +++++ AW K HYP  F AA  + ++   +                       
Sbjct: 1312 AHATAYVLMAWKIAWFKVHYPEAFYAAIFSFKVKEHDIETCINGGIRAITKRYNEIKSLI 1371

Query: 801  ----------------------KIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYY 837
                                     +   +  + NI++   S+       F V +N+IY 
Sbjct: 1372 NKTKFAKNKSELTLNKKDEDLMPTYELYLEMLERNIKLEQVSLEHSDALHFVVKNNKIYP 1431

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
                I G+G   A+ I++   ++ F S  D  ++    KLN+
Sbjct: 1432 PFNTINGLGDEIAKLIVKKRNEEGFKSQADLKTKC---KLNK 1470



 Score = 41.3 bits (95), Expect = 0.99,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 17  HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA--CAA---GIQPII 71
           H+  S+ +G   ++++      ++   IAITD+  + +   F+  A          +   
Sbjct: 327 HTKMSVHDGLNDVDDLKKFCEENKLKDIAITDSGVVQA---FADLASWKEKTNSETKVHY 383

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G ++D+    N  + N        +  ++ 
Sbjct: 384 GLEVDLFDDRNFIVKNNKDLKLDKLSFVIF 413


>gi|261349359|gb|ACX71239.1| DNA polymerase III alpha subunit [Streptococcus suis]
          Length = 318

 Score =  172 bits (436), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 113/327 (34%), Positives = 184/327 (56%), Gaps = 9/327 (2%)

Query: 589 LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVS 648
             +   ++D++ I  +D +T  L     T GIFQ E  G    L  ++P   EDI+A  S
Sbjct: 1   RERYQQEIDIAKIDLEDKKTLELFAAGRTKGIFQFEQPGAISVLRRVKPGRFEDIVATTS 60

Query: 649 LYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
           L RPG  D    +  RK+G+E +  + P I P+L+ T G+++YQEQVMQIAQ+ +G++L 
Sbjct: 61  LNRPGASDYSDNFVKRKHGQETVDLLDPTIAPILQPTYGIMLYQEQVMQIAQVYAGFTLG 120

Query: 709 EADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAA 768
           +AD+LRRAM KK  +EM   +  F+ GA KNG ++  A  IF ++AKFA YGFN+SHA A
Sbjct: 121 KADLLRRAMSKKNAQEMQAMEAEFLQGALKNGHAEESAREIFGMMAKFAGYGFNRSHAYA 180

Query: 769 YAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
           Y+ +++Q A+ K+HY   F    +            + +DA QF+ ++   ++N      
Sbjct: 181 YSALAFQMAYFKSHYTDVFFDVMLNHSSSA------YIEDAMQFDFEVARLTINNIPYHD 234

Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
           K   +++Y  L  +KG+    A  I++     P+ S+EDF  R+      + +L  L+  
Sbjct: 235 KFDKSKVYLGLKTLKGLPKDLALWILDHR---PYKSVEDFILRLPDNFKKKDLLIPLIQI 291

Query: 889 GALDCFGYSRMQLLQSLDNIQKYAQWV 915
           G  D F  +R +++++LDN+  +A+ +
Sbjct: 292 GLFDDFDANRKKIIENLDNLFVFAEAI 318


>gi|269115238|ref|YP_003303001.1| DNA polymerase III polC-type [Mycoplasma hominis]
 gi|268322863|emb|CAX37598.1| DNA polymerase III polC-type [Mycoplasma hominis ATCC 23114]
          Length = 1437

 Score =  172 bits (435), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 145/950 (15%), Positives = 297/950 (31%), Gaps = 201/950 (21%)

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
            + A    I         ++ QD   + +Q            +LV    G ++L +++SR 
Sbjct: 571  KLAKDYNI---------LNSQDLNNVDSQKILSHKFTYETRILVKNQAGLKKLFKIISRS 621

Query: 120  YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             L  Q K++ +I    L     E L   +  +   +    F  +++     L  +     
Sbjct: 622  -LTSQFKKNPQIYFDQL--GNDEDLFFGSATNQSYVWDQVFTGTNENLLNSLKYYD---- 674

Query: 180  DRLYVNL-----------QRHRGYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYE 226
               Y+ L             H   D  +     ++  A +     VA ++  ++      
Sbjct: 675  ---YIELPPISSFQYMIDSNHVTLDELKFLYKDLISKAKSLNKMCVAVSDCRYIYNYQRL 731

Query: 227  AHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL 285
             H++ + A      +    +    P+       EM+  F+ L ++      +    + I 
Sbjct: 732  IHEIYIEAPTLGGGLHWLKKRPSHPEFRYLTTREMLKEFAFLNDSYLINEIVIENPNKIA 791

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
               +  +    +K           +LR      L+ R                +R++ EL
Sbjct: 792  NEISSNIQVIKDKLYVPTFDNSPQKLREVVYRTLKERYGDNPD------PIIVKRIEKEL 845

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------ 399
            N I +  +S  + I    ++ + ++   VG  RGS   S+ A    I++++PL       
Sbjct: 846  NPIIKYGYSVIYWISHKLVKKSNEDGYLVG-SRGSVGSSIVANLAGISEVNPLPPHYLCK 904

Query: 400  -----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQ 424
                                                ++ FE FL  +   +PD D++F  
Sbjct: 905  NCKYFEWNSNKEIYSGWDLPDKHCPNCNSILSKDGHNIPFETFLGFEADKVPDIDLNFSG 964

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            + +  +  YV+  +G     +  T  ++  K A     +                     
Sbjct: 965  EYQPTIHNYVKELFGEAHTYRAGTIATVAEKTAYGFCKKY-------------------- 1004

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QL 542
                          +       S   L  ++ K +G+ R    H  GI+I  +       
Sbjct: 1005 -----------EEEKRGNYQPWSHLFLDFLASKTQGVKRTTGQHPGGIIIIPKEFDVEDF 1053

Query: 543  VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIP 602
             P+          + +     +   +   + L L  L     ++  + +     +   IP
Sbjct: 1054 TPVNYPANDTE--SSWKTTHFDFTSIH-DNVLKLDLLGHDDPTVIRMLETLTNTNAKEIP 1110

Query: 603  FDDHETYHLLTTKGT---------------LGIFQLESSGMRQALEGMQPDCIEDIIALV 647
              D E   L  T  +                G+ +  ++ +R+ L+  QP    D+I L 
Sbjct: 1111 KFDAEVMKLFYTTESLKISPSDIGGETTGAYGLPEFGTNFVRKMLKKAQPRSFNDLILLS 1170

Query: 648  SLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSL 707
             L          V+ +              +    K+    +  ++ +M+   +      
Sbjct: 1171 GLSH-----GTDVWTDNA----------EELVARGKKLIECVCCRDDIMR-GLIEWNIEP 1214

Query: 708  SEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
              A  +   + K      +     +      + + +    ++ ++      Y F K+HA 
Sbjct: 1215 LTAFQIMEKVRKGKGLTPE-----WEELLKSHNVPEWYIESLQKI-----KYMFPKAHAT 1264

Query: 768  AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFN-------------- 813
            AY +++++ AW K +YP+ F A+  T   D ++        A                  
Sbjct: 1265 AYVIMAWRIAWYKLYYPLPFYASFYTNRPDAIDIQIMSSGAASVHQKLIELKNRQNSTGE 1324

Query: 814  ---------IQIMPPSVNTPCVDFKVG-----------------DNRIYYSLAAIKGVGT 847
                     I ++  +       FK+                  D  +      + G+G 
Sbjct: 1325 KLSVKEEALIPVLEITQELYARGFKIKNVDLKLSLADKWIIDEKDKALIPPFNVVDGLGI 1384

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            T A+ I+ A  +  F S+ED  SR    K+N R++  L   G LDC   +
Sbjct: 1385 TVAQTIVSARKEGFFLSIEDLASRT---KVNSRIISELKKIGVLDCLDDT 1431



 Score = 79.8 bits (195), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-AGIQPI 70
           V L   S+ S  +G  + ++ +D        AIA+TD +++    EF   A     ++PI
Sbjct: 320 VELAARSNMSAQDGISTPSDYIDAAKFYGHKAIALTDLDDVQGFPEFYNYAKKQKDVKPI 379

Query: 71  IGCQLDIDMQDN 82
            G  L     D 
Sbjct: 380 YGATLSTIDSDK 391


>gi|39938951|ref|NP_950717.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
 gi|39722060|dbj|BAD04550.1| DNA polymerase III alpha subunit [Onion yellows phytoplasma OY-M]
          Length = 1571

 Score =  171 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 131/935 (14%), Positives = 290/935 (31%), Gaps = 148/935 (15%)

Query: 83   LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142
              +  +    +     I +LV+   GY+ L EL+S   L     +S R+  S L  +  +
Sbjct: 661  FDLQEKIDPKYERPYHINILVANQTGYRNLFELLSNA-LTKDFNKSPRVLKSNLANL-RQ 718

Query: 143  GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-----HRGYD---- 193
            GL++ +G  +  I       +    +K +  +        Y+ +Q      H  +D    
Sbjct: 719  GLLVGSGCMNSNIFEIALNQNISKLKKAISFYD-------YIEVQPPQAYKHLIHDLGKN 771

Query: 194  -----RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA------HSTVVSQ 242
                       +++ +      ++AT +  ++   + +  ++ ++        H     +
Sbjct: 772  GLQIIETTLKTIIKESQKQAKIVIATGDVHYIHPWEKDYREIYISAKMVGGGLHKLSRYE 831

Query: 243  KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                        +   +  +   D     E  +E     +  ++            + D 
Sbjct: 832  NKNLPENHLLTTQEMIDAFAFLQDEKLIYEIVIENTHLLNSKIEKIKAFSSELFSFKDDA 891

Query: 303  IQKEEE-----NELRNKAVAGLEVRL--AQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
             +   +      E++      ++         + K    Q+ +  +    N  +    + 
Sbjct: 892  FKANLQIPSIKEEIKRLVDTKVKQMYGATPHPLIKERLDQELKSIIGETKNEKSNKNIAP 951

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---FSLLFERFLNPDR 412
             + +    ++ + +    VG  RGS   S+ A  L IT+++PL+   +       +   +
Sbjct: 952  VYYLSHLLVKNSLEKGYLVG-SRGSIGSSLVATMLEITEVNPLKPHYYCPQCNYTIVQLK 1010

Query: 413  MSMPDFDIDFCQDRRD--------------EVIRYVQNKYGHE-RVAQIITFGSLQAKAA 457
                +   +  +++                        ++  +       TF   +    
Sbjct: 1011 PQEKEQYYNSEEEKYHNELDKVFSGYDLPNMPCPKCDTQFKKDGHDIPFETFLGFEGNKT 1070

Query: 458  ----LRDVGRALQMPYSQVDRLCKLIPNDPAHPV----SLQAIADDSRFREARLADPSVD 509
                L   G      ++ +  L        A  +       A      F E +       
Sbjct: 1071 PDIDLNFAGDYQSQAHNYIKELLGEKHAFRAGTIQTVAQRNAYGYTMGFVEEKQKQWRKQ 1130

Query: 510  RLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVRS-DLPVTQFNMKWIEKA 566
            ++ +I+ K+EG+ R    H  GIV+      + ++ P+       +   T F+    E  
Sbjct: 1131 KVAQIANKIEGVKRSNGQHPGGIVVVPPDRSIYEVTPVQYPANDTNWKTTHFDYHSFE-Q 1189

Query: 567  GLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL---SLIPFDDHETYHLLTTKGTLGIFQL 623
             L K D LG     +++  +D++ +            IP DD E Y L        I   
Sbjct: 1190 NLFKLDILGHDDPMMIKFLMDYVKENRRIFPFTRAQDIPVDDPEVYKLF--SNEFKIDSS 1247

Query: 624  ESSGMRQALEGMQPDCIEDII-----ALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
             + G +  ++ +       I        ++  +       +  N     K   +S    +
Sbjct: 1248 VNPGNKITIDSLGIPEFGTIFVKQMLKDLTTAKKNSQKQAIKINFAALVKISGLSHGTDV 1307

Query: 679  D-----PMLKETQGVIIYQEQV------------MQIAQLLSGYSLSEADVLRRAMGKKI 721
                    + +T     Y+ +             + +     G    +A  +   + K  
Sbjct: 1308 WNQNARDAINKTGEFEKYKNKTISFDDIIGCRDDIMLQLQEKGLDPLKAFDIMEFIRKGK 1367

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             ++  +   ++                 +   A    Y F K+HA AY +++ + AW K 
Sbjct: 1368 PQDDFQTWNKYKQEIK------DKVEAWYIDSAAKIKYLFPKAHATAYVIMALRIAWFKM 1421

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDAR-----------------------------QF 812
            H P+ F +   +   +  +       D +                             + 
Sbjct: 1422 HAPLAFYSGYFSKRTEQFDHQTMISNDIKIIKEKLNKLAELKKSKKIKAKEDALINTLKI 1481

Query: 813  NIQIMPPSVNTPCVDF--------KVGDNR-IYYSLAAIKGVGTTTARHIMEASADKPFD 863
              +++        VDF        K+ D   +   L ++ G+G   A  I+EA  +KPF 
Sbjct: 1482 AEEMVHRGFKFLTVDFNKSDVSVLKIEDGGFLRMPLLSLDGLGLIAANKIVEARQEKPFT 1541

Query: 864  SLEDFCSRVDSKKLNRRVLESLVFA---GALDCFG 895
              +DF +R    K+N+ +   L  A     LD   
Sbjct: 1542 -KDDFATR---SKINKTI---LAKAKQENLLDSLE 1569



 Score = 71.4 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 38/88 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           +    H+  S L+   S    L    +    AIA TD + +++  E ++ A    I+PI 
Sbjct: 389 IEFHTHTKMSNLDAINSAKEYLQIAESWGHEAIAFTDHDGIYAYPEINEHAKNKKIKPIY 448

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
           G ++D   +  + +TNQ +        +
Sbjct: 449 GVEVDFIEEKPIYITNQKEDNLEKDFVL 476


>gi|218659790|ref|ZP_03515720.1| DNA polymerase III subunit alpha [Rhizobium etli IE4771]
          Length = 248

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 63/150 (42%), Positives = 92/150 (61%), Gaps = 2/150 (1%)

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            ++FAGA DCFG  R QL   LD I  YAQ  ++N+ +   +IF     +  +KI L  FS
Sbjct: 1    MIFAGAFDCFGTDRAQLSAGLDRILGYAQRAQENKLSGQSDIFGSTLTSGPEKIALPPFS 60

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRG--NNIRLAAMVV 1002
               +S R   E +VLGFY + HPLD Y  IL+KM ++ + E  A I+   +N RLA  V+
Sbjct: 61   PWLASERLLKEFQVLGFYLTAHPLDSYSNILQKMRVQTFAEFSAAIKQGASNARLAGTVI 120

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            SKQ++KTR G+++G + FS+ + ++EA  F
Sbjct: 121  SKQERKTRTGNKMGIIVFSDSSGQFEAVLF 150


>gi|19548822|gb|AAL90808.1| polymerase III subunit alpha [Escherichia coli]
          Length = 318

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 149/316 (47%), Positives = 215/316 (68%), Gaps = 13/316 (4%)

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA
Sbjct: 1   PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 60

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +RDVGR L  PY  VDR+ KLIP DP   +  +A   + +  E   AD  V  L+++++
Sbjct: 61  VIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMAR 119

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL
Sbjct: 120 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 179

Query: 577 KTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
           +TLT++  +L+ + +R  K      D++ IP DD +++ +L    T  +FQLES GM+  
Sbjct: 180 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDL 239

Query: 632 LEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKE 684
           ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E+I        H  + P+L+ 
Sbjct: 240 IKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEP 299

Query: 685 TQGVIIYQEQVMQIAQ 700
           T G+I+YQEQVMQIAQ
Sbjct: 300 TYGIILYQEQVMQIAQ 315


>gi|313665237|ref|YP_004047108.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            leachii PG50]
 gi|312949309|gb|ADR23905.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            leachii PG50]
          Length = 1480

 Score =  171 bits (432), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 143/911 (15%), Positives = 295/911 (32%), Gaps = 199/911 (21%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE-IGTEGLIMLTGGSSG 153
                  +LV    G + L +LV++ +  +    S +I  S L E      L+  +   + 
Sbjct: 629  KGFHTNILVKNQAGLKELYKLVTKSHTTN-FYSSPKIFKSDLIEVKKNNNLLFGSSCVNS 687

Query: 154  PIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR---------HRGYD----RYRESQV 200
             I      ++ +  ++ +  +        Y+ +Q          +   D    +   + +
Sbjct: 688  EIFELARTSTLENLKQAISFYD-------YIEIQPISVYKNLLQNDSLDLDQLKQVITNI 740

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-----HSTVVSQKDRPRVTPDHYLK 255
            + +A      ++A+++  + + E  +  +V +           +    ++ +  PD YL+
Sbjct: 741  INIAKQENKLIIASSDCHYTNPELKQIREVYINAKGLGGIRHPLFDFNNKVKDYPDQYLR 800

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
              +EM+  FS L +       +    + I ++    +    +            +L++K 
Sbjct: 801  TTNEMLEEFSWLEDENLIYEIVVINSNKINEMIDINVIPIKDGLFTPKIANVNEKLKDKC 860

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
                +    +             +RL+ EL  I +  F+  + I    ++ +  +   VG
Sbjct: 861  YQTAKQMYGENL------PDIVEKRLEKELGSITKHGFAIVYWISHLLVKQSYDDGYLVG 914

Query: 376  PGRGSGAGSVTAYALTITDIDPLR------------------------------------ 399
              RGS   S  A    IT+++PL+                                    
Sbjct: 915  -SRGSVGSSFVATMAQITEVNPLKAHYRCLNCKYSDFDTDPTYKCGYDLPTKNCPNCNQK 973

Query: 400  -----FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +++   + +  +G   V +  T  ++  
Sbjct: 974  LIGDGHDIPFETFLGFDGDKVPDIDLNFSGEYQNQAHNFTKKMFGENNVFRAGTISTVAE 1033

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V                                      +     P    +  +
Sbjct: 1034 KTAFGYVKTYF-------------------------------EETKKDTNLPRKTEINRL 1062

Query: 515  SQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLI 569
            ++  +G+ R    H  GI+I   +  +    P+             T F+   I    L+
Sbjct: 1063 AKLAQGVKRTTGQHPGGIIILPNEYEIEDFTPVNYPADDLSSTWKTTHFDFHSIHD-NLL 1121

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGT------------ 617
            K D LG    T L+   D        +D   IP DD   Y L ++               
Sbjct: 1122 KMDILGHDDPTALRMLRDLTN-----IDPITIPTDDKNVYSLFSSLQALNLTSDKINDEI 1176

Query: 618  ---LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
               +GI +  +  +R  L   +P    D++ +  L          V+             
Sbjct: 1177 TGAIGIPEFGTGFVRNMLRETKPKTFADLVQISGLSH-----GTDVWLGNAR-------- 1223

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
              LI         VI  ++ +M     + G   S A ++  ++ K    + +     +I 
Sbjct: 1224 -DLIKDNKANISTVIGCRDDIMVYLINI-GLESSLAFMIMESVRKGKGLKKE-----WID 1276

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               K+ I      +  ++      Y F K+HA AY +++Y+ AW K +YP E+ A  ++ 
Sbjct: 1277 IMKKHNIPDWYIDSCLKI-----KYMFPKAHATAYVLMAYRIAWYKIYYPTEYYATYLST 1331

Query: 795  EMDNVEKIKKFC-----------------------------QDARQFNIQIMPPSVNTPC 825
            + D  +                                   +   +  +++   ++    
Sbjct: 1332 KADVFDLKTALGGYESVLLKLKSQQQKVKNGEKLSKKEEDLEVVYEVLLEMFARNIKFSN 1391

Query: 826  VDFK-----------VGDNR--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
            +DF+           + DN   I      I  +G   A  I+ A   KP  S+ D  +R 
Sbjct: 1392 IDFEKSEATKFKVDVLNDNTKIIIPPFNVIDSLGEAVALSIINARNTKPITSVNDLKNRT 1451

Query: 873  DSKKLNRRVLE 883
             + +   ++ E
Sbjct: 1452 QTTQTQIKIFE 1462



 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 8/78 (10%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA----CA--- 64
           V L  H+  S+++G     + L+ I+     AIA TD  N+ +  +  +           
Sbjct: 339 VELHAHTKMSVMDGVSDPIDYLELISNWNHKAIAFTDHTNVQAFPDIYKALNSVNKKRDD 398

Query: 65  -AGIQPIIGCQLDIDMQD 81
              I+ I G ++++   D
Sbjct: 399 QNKIKAIYGLEINMLNND 416


>gi|5912303|emb|CAB56087.1| DNA polymerase III alpha subunit [Rickettsia prowazekii]
 gi|5912308|emb|CAB56091.1| DNA polymerase III alpha subunit [Rickettsia prowazekii]
          Length = 361

 Score =  171 bits (432), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 88/205 (42%), Gaps = 7/205 (3%)

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             ++ I ++L AIKGV     + + +       F S+ DF  R+  K +N ++LE+L+ AG
Sbjct: 41   DESTIIFALGAIKGVTANFGKLVTDERKARGAFKSITDFIERLPPKSINSKLLENLIKAG 100

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
              D    +R+QL  S+  +  Y+    + + +   ++    K +      L      + +
Sbjct: 101  CFDELHDNRLQLFLSIPKLIAYSTSYHQEQESNQFSL---IKVSSLSPTILVSSDYADKN 157

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-TIRGN-NIRLAAMVVSKQQK 1007
                 E   +G + S HPL  Y+ I  ++ I    +       G   + LA ++  K  +
Sbjct: 158  TLAFYEFEAMGLFLSNHPLTEYQGIFSRLNILNTRDLYNKLPNGTNRVTLAGVIQKKDSR 217

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             + +G R   +  S+P   +E   F
Sbjct: 218  MSARG-RFVTLVLSDPENIFELTIF 241


>gi|5912321|emb|CAB56106.1| DNA polymerase III alpha subunit [Rickettsia sibirica]
          Length = 360

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 88/203 (43%), Gaps = 7/203 (3%)

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I ++L AIKGV     + + +       F S+ DF  R+  K +N ++LE+L+ +G  
Sbjct: 42   GAIIFALGAIKGVTPNFGKLVTDERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCF 101

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R+QLL S+  +  Y+    + + +   ++    K +      L      + +  
Sbjct: 102  DELHDNRLQLLSSIPKLLSYSTAYHEEQESNQFSL---IKVSSLSPTILVSSDYADKNTL 158

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGN-NIRLAAMVVSKQQKKT 1009
               E   +G + S HPL  Y+ I  ++ I    +       G   + LA ++  K  + +
Sbjct: 159  AFYEFEAMGLFISNHPLTEYQEIFSRLNILNIADLHNNLPDGTNRVNLAGVIQKKDSRMS 218

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
             +G R   +  S+P   +E + F
Sbjct: 219  ARG-RFVTLVLSDPENIFELSIF 240


>gi|68271948|gb|AAY89240.1| putative DNA polymerase III alpha subunit [uncultured bacterium
            BAC-L1N9]
          Length = 437

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/367 (20%), Positives = 134/367 (36%), Gaps = 38/367 (10%)

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFA 757
                +G  LS  D LR+A+ KK   +        F +GA+  G    +AV ++E++  FA
Sbjct: 5    CAAFAGMPLSTGDGLRKALSKKRPTKQLAAYAGEFFAGAAALGRDPEVAVKVWEMVLSFA 64

Query: 758  DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIM 817
             Y F K H+ +Y  ++    +++ HYP EF+AA +        +   +  +A +  + + 
Sbjct: 65   GYSFCKGHSCSYIRVAQHACYLRAHYPAEFIAAVL-ANGGGFYRPFAYVAEAMRMGLAVR 123

Query: 818  PPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK----------------- 860
            PP VN         D  +      IKG+   T   I  A  ++                 
Sbjct: 124  PPDVNASAFRTTGHDGEVRIGFQFIKGLSDDTVERIACARGEQGTGNGERDNAPVARSPF 183

Query: 861  -----PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF--GYSRMQLLQSLDNIQKYAQ 913
                 PF S +D   R + +      L  L+  GA D    G +R  +L ++D       
Sbjct: 184  PVPGSPFVSFDDLRIRTNLRP---DDLRLLIRVGACDAIAGGMTRPMMLWAVDAASPPGP 240

Query: 914  WVEKNRTNKHENIFAHEKGTFS-------DKITLEKFSVENSSVRFENEQRVLGFYFSGH 966
                        +FA    + +       +   + +    ++  R   E  +LGF    H
Sbjct: 241  LS-TFVERGSTALFASFPLSLARERGTGGEGTGVPRLREYDTDRRRRAEYELLGFTTDIH 299

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P+ ++   L +  +           G  +  A M+ + +   T     + + TF +    
Sbjct: 300  PMRLFTEELSRFRVVKSTAL-PQHVGRTVLCAGMLTTAKPVHTITEEPMEFATFDDGDGL 358

Query: 1027 YEANFFP 1033
             E   FP
Sbjct: 359  IETVLFP 365


>gi|299145851|ref|ZP_07038919.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_23]
 gi|298516342|gb|EFI40223.1| DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_23]
          Length = 731

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 146/546 (26%), Positives = 250/546 (45%), Gaps = 44/546 (8%)

Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE--- 441
              Y  + T++  +   +       P   S+PD D+DF  DRR EV  Y++ +Y H+   
Sbjct: 5   SVKYKTSSTEVKAIDCFVDSGYLQGP-GGSLPDVDVDFQSDRRQEVKEYIERRYNHDGKQ 63

Query: 442 RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
           RV    TF +L+ KA L+DV R  ++P + V+ +  +  +D      L  +A  +  ++ 
Sbjct: 64  RVFSAGTFTTLKLKAVLKDVARVHRVPVNIVNYITAIFEDDNMSWTDLFTMAATN--KKV 121

Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS-------QLVPMYRDVRSDLP 554
                   +++E  + L G  R +S HA+ +++                P+ +     + 
Sbjct: 122 HSFIMEYPQVIEDIRTLMGQPRSSSVHASALLVTPDSKDGKDLECFDFTPIKKI--DGVL 179

Query: 555 VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV----KVDLSLIPFDDHETYH 610
           +++F+   +++ GL+K D LG+K L+ LQ  ++    +        ++     DD + Y 
Sbjct: 180 ISEFDGYSLDEQGLLKNDCLGIKELSKLQAVINICNDKYHTNITFQNIVQSGLDDPKVYQ 239

Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
           LL    T  IFQ  S GM + L  MQPD IED+IA  +L+RP  +D+             
Sbjct: 240 LLQKGYTQNIFQFSSKGMTKFLVSMQPDKIEDLIAANALFRPATLDSGSTDKYVDCKLGD 299

Query: 671 IVSIH-PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
              ++       +K T GV+ YQEQ+ QIA+ +  +SL E   L + + KK  +++   +
Sbjct: 300 ADPVYLWGTYNAMKNTYGVLCYQEQLAQIAREVGKFSLGEGVKLVKLISKKKVDKILALR 359

Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
           ++F++GA++NG  K  A  I+ +      Y FNKSHA AYAV +Y  A++K +YP  F  
Sbjct: 360 DKFMTGANENGCPKEDAEAIWHMFEVAGGYLFNKSHATAYAVTAYAGAYLKANYPTAFYT 419

Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF--KVGDNRIYYSLAAIKGVGT 847
            ++    D+         +      +I+PP +N     F      N+I++SL+ IK +G 
Sbjct: 420 IALQWAKDDEIPTLMSEMELCS-EAKIVPPDINVSGGTFITDYETNKIFWSLSRIKMLGA 478

Query: 848 TTARHIMEASA-DKPFDSLEDFCSRVDSKKL--------------------NRRVLESLV 886
                I+        F S+E+F  R+   KL                    N R +  L+
Sbjct: 479 KATEWIINERNVRGEFSSIENFIERIFRYKLKQYKYWDDPDNPNEVTKCPVNARHVRHLI 538

Query: 887 FAGALD 892
            +G  D
Sbjct: 539 LSGCFD 544


>gi|265763453|ref|ZP_06092021.1| DNA polymerase III subunit alpha [Bacteroides sp. 2_1_16]
 gi|263256061|gb|EEZ27407.1| DNA polymerase III subunit alpha [Bacteroides sp. 2_1_16]
          Length = 731

 Score =  169 bits (429), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 146/546 (26%), Positives = 250/546 (45%), Gaps = 44/546 (8%)

Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE--- 441
              Y  + T++  +   +       P   S+PD D+DF  DRR EV  Y++ +Y H+   
Sbjct: 5   SVKYKTSSTEVKAIDCFVDSGYLQGP-GGSLPDVDVDFQSDRRQEVKEYIERRYNHDGKQ 63

Query: 442 RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
           RV    TF +L+ KA L+DV R  ++P + V+ +  +  +D      L  +A  +  ++ 
Sbjct: 64  RVFSAGTFTTLKLKAVLKDVARVHRVPVNIVNYITAIFEDDNMSWTDLFTMAATN--KKV 121

Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS-------QLVPMYRDVRSDLP 554
                   +++E  + L G  R +S HA+ +++                P+ +     + 
Sbjct: 122 HSFIMEYPQVIEDIRTLMGQPRSSSVHASALLVTPDSKDGKDLECFDFTPIKKI--DGVL 179

Query: 555 VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV----KVDLSLIPFDDHETYH 610
           +++F+   +++ GL+K D LG+K L+ LQ  ++    +        ++     DD + Y 
Sbjct: 180 ISEFDGYSLDEQGLLKNDCLGIKELSKLQAVINICNDKYHTDITFQNIVQSGLDDPKVYQ 239

Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
           LL    T  IFQ  S GM + L  MQPD IED+IA  +L+RP  +D+             
Sbjct: 240 LLQKGYTQNIFQFSSKGMTKFLVSMQPDKIEDLIAANALFRPATLDSGSTDKYVDCKLGD 299

Query: 671 IVSIH-PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
              ++       +K T GV+ YQEQ+ QIA+ +  +SL E   L + + KK  +++   +
Sbjct: 300 ADPVYLWGTYNAMKNTYGVLCYQEQLAQIAREVGKFSLGEGVKLVKLISKKKVDKILALR 359

Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
           ++F++GA++NG  K  A  I+ +      Y FNKSHA AYAV +Y  A++K +YP  F  
Sbjct: 360 DKFMAGANENGCPKEDAEAIWHMFEVAGGYLFNKSHATAYAVTAYAGAYLKANYPTAFYT 419

Query: 790 ASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF--KVGDNRIYYSLAAIKGVGT 847
            ++    D+         +      +I+PP +N     F      N+I++SL+ IK +G 
Sbjct: 420 IALQWAKDDEIPTLMSEMELCS-EAKIVPPDINVSGGTFITDYETNKIFWSLSRIKMLGA 478

Query: 848 TTARHIMEASA-DKPFDSLEDFCSRVDSKKL--------------------NRRVLESLV 886
                I+        F S+E+F  R+   KL                    N R +  L+
Sbjct: 479 KATEWIINERNVRGEFSSIENFIERIFRYKLKLYKYWDDPDNPNEATKCPVNARHVRHLI 538

Query: 887 FAGALD 892
            +G  D
Sbjct: 539 LSGCFD 544


>gi|301631164|ref|XP_002944676.1| PREDICTED: DNA polymerase III subunit alpha-like, partial [Xenopus
           (Silurana) tropicalis]
          Length = 298

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 147/291 (50%), Positives = 189/291 (64%), Gaps = 9/291 (3%)

Query: 178 FGDRLYVNLQR-HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
           F  R Y+ LQR  R  D    +    LA   +LP+VAT+   F+ E++YEAH+  + +A 
Sbjct: 11  FPHRFYIELQRAGRPDDEAHVAAAAPLAARLQLPVVATHPIQFMDEDEYEAHEARVCIAE 70

Query: 237 STVVSQKDR-PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
             +++   R  R T + Y K  ++M ++F+DLP AL+NTVEIARRCS  L +  P LP F
Sbjct: 71  GEILANPRRVRRFTREQYFKTTAQMQALFADLPSALQNTVEIARRCSLTLLLGKPQLPDF 130

Query: 296 IEKECDDIQKEEENELRNKAVAGLEV---RLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
                  I    E   R  +  GL+     L   A  +    Q Y +RL+FEL+ I +M 
Sbjct: 131 PTPNGMPI----EEYFRYASHQGLKERLEHLYPHAAEREQQRQRYLERLEFELDTILKMG 186

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           F GYFLIV DFIQWAK N  PVGPGRGSGAGS+ AYAL ITD+DPL++ LLFERFLNP+R
Sbjct: 187 FPGYFLIVGDFIQWAKANGCPVGPGRGSGAGSLVAYALKITDLDPLQYKLLFERFLNPER 246

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
           +SMPDFDIDFCQ  RD VI YV++KYG + V+QI TFG++ AKAA+RDVGR
Sbjct: 247 VSMPDFDIDFCQANRDRVIDYVKDKYGKDAVSQIATFGTMAAKAAIRDVGR 297


>gi|5912334|emb|CAB56077.1| DNA polymerase III alpha subunit [Rickettsia helvetica]
          Length = 357

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 89/204 (43%), Gaps = 7/204 (3%)

Query: 832  DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGA 890
             + I ++L AIKGV     + + +      PF S+ DF  R+  K +N ++LE+L+ +G 
Sbjct: 39   GSAIIFALGAIKGVTPNFGKLVTDERKARGPFKSITDFIERLPPKSINSKLLENLIKSGC 98

Query: 891  LDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSV 950
             D    +R+QL  S+  +  Y+    + + +   ++    K +      L      + + 
Sbjct: 99   FDELHDNRLQLFSSIPKLLSYSTSYHEEQESNQLSL---IKVSSLSPTILVSSDYADKNT 155

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGN-NIRLAAMVVSKQQKK 1008
                E   +G + S HPL  Y+ I  ++ I    +       G   + LA ++  K  + 
Sbjct: 156  LAFYEFEAMGLFISNHPLTQYQEIFSRLNILNTADLYNNLPEGTNRVNLAGVIQKKDSRM 215

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            + +G R   +  S+P   +E + F
Sbjct: 216  SARG-RFVTLVLSDPENIFELSIF 238


>gi|5912329|emb|CAB56096.1| DNA polymerase III alpha subunit [Rickettsia rhipicephali]
          Length = 360

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 88/203 (43%), Gaps = 7/203 (3%)

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I ++L AIKGV     + + +       F S+ DF  R+  K +N ++LE+L+ +G  
Sbjct: 42   GAIIFALGAIKGVTPNFGKLVTDERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCF 101

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R+QLL S+  +  Y+    + + +   ++    K +      L      + +  
Sbjct: 102  DELHDNRLQLLSSIPKLLSYSTSYHEEQESNQFSL---IKVSSLSPTVLVSSDYADKNTL 158

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGN-NIRLAAMVVSKQQKKT 1009
               E   +G + S HPL  Y+ I  ++ I    +       G   + LA ++  K  + +
Sbjct: 159  AFYEFEAMGLFISNHPLTEYQEIFSRLNILNTADLHNNLPDGTNRVNLAGVIQKKDSRMS 218

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
             +G R   +  S+P   +E + F
Sbjct: 219  ARG-RFVTLVLSDPENIFELSIF 240


>gi|42560899|ref|NP_975350.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides
            SC str. PG1]
 gi|42492396|emb|CAE76992.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. mycoides
            SC str. PG1]
 gi|301320644|gb|ADK69287.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            mycoides subsp. mycoides SC str. Gladysdale]
          Length = 1482

 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 144/911 (15%), Positives = 289/911 (31%), Gaps = 199/911 (21%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEI-GTEGLIMLTGGSSG 153
                  +LV    G + L +LV++ +  +    S +I    L +I     L+      + 
Sbjct: 631  KGFHTNILVKNQAGLKELYKLVTKSHTTN-FYSSPKIFKDDLIQIKQNNNLLFGASCVNS 689

Query: 154  PIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR---------HRGYD----RYRESQV 200
             I      ++ +  ++ +  +        Y+ +Q          +   D    +   + +
Sbjct: 690  EIFELARTSTLENLKQAISFYD-------YIEVQPISVYKNLLQNDSLDLDQLKEIITNI 742

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-----HSTVVSQKDRPRVTPDHYLK 255
            + +A      +VA+++  + + E  +  +V +           +    +R +  PD +L+
Sbjct: 743  INIAKQENKLVVASSDCHYTNPELKQIREVYINAKGLGGIRHPLFDFNNRVKDYPDQHLR 802

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
               EM+  F  L +       +    + I  +    +    +            +L++K 
Sbjct: 803  TTKEMLKEFEWLNDDDLINEIVITNSNKIADMIDSNVIPIKDGLFTPKIANVNEKLKDKC 862

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
                +    +         +   +RL+ EL  I +  F+  + I    ++ +  +   VG
Sbjct: 863  YQTAKQMYGEML------PEIVEKRLEKELGSITKHGFAIVYWISHLLVKQSLDDGYLVG 916

Query: 376  PGRGSGAGSVTAYALTITDIDPLR------------------------------------ 399
              RGS   S  A    IT+++PL+                                    
Sbjct: 917  -SRGSVGSSFVATMAQITEVNPLKAHYRCLNCKYSDFNTDPAYKCGYDLPEKNCPNCNQK 975

Query: 400  -----FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  +   +PD D++F  + +++   + +  +G   V +  T  ++  
Sbjct: 976  LIGDGHDIPFETFLGFNGDKVPDIDLNFSGEYQNQAHNFTKKMFGENNVFRAGTISTVAE 1035

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V                                +  R        P    +  +
Sbjct: 1036 KTAFGYV---------------------------KTYFEETKRDASL----PRKTEINRL 1064

Query: 515  SQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLI 569
            ++  +G+ R    H  GI+I   +  +    P+             T F+   I    L+
Sbjct: 1065 AKLAQGVKRTTGQHPGGIIILPNEYEIEDFTPVNYPADDLNSTWKTTHFDFHSIHD-NLL 1123

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGT------------ 617
            K D LG    T L+   D        +D   IP DD   Y L ++               
Sbjct: 1124 KMDILGHDDPTALKMLRDLTN-----IDPITIPTDDKNVYSLFSSLQALNLTSDKINDEI 1178

Query: 618  ---LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
               +GI +  +  +R  L+  QP    D++ +  L          V+             
Sbjct: 1179 TGAIGIPEFGTGFVRNMLKETQPKTFADLVQISGLSH-----GTDVWLGNAR-------- 1225

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
              LI     +   VI  ++ +M     + G   S A ++  ++ K    + +     +I 
Sbjct: 1226 -DLIKDKKADISTVIGCRDDIMVYLINM-GLESSLAFMIMESVRKGKGLKKE-----WID 1278

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               +  +      +  ++      Y F K+HA AY +++Y+ AW K +YP E+ A  +T 
Sbjct: 1279 VMKQYNVPDWYIDSCLKI-----KYMFPKAHATAYVLMAYRIAWYKIYYPTEYYATYLTT 1333

Query: 795  EMDNVE------------------------------------KIKKFCQDARQFNIQIMP 818
              D  +                                     + +   +     I+   
Sbjct: 1334 RADVFDLKTVLGGYDAVLLKLKSQQQRVKNGEKLSKKEEDLEVVYEVLLEMFARGIKFSN 1393

Query: 819  PSVNTPCV-DFKVG---DNR--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
                      FKV    DN   I      I  +G   A  I+ A   KP  S+ D  +R 
Sbjct: 1394 IDFEKSEATKFKVDILQDNSKIIIPPFNVIDSLGEAVALSIINARNTKPITSVNDLKNRT 1453

Query: 873  DSKKLNRRVLE 883
             + +   ++ E
Sbjct: 1454 QTTQTQIKIFE 1464



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG----- 66
           V L  H+  S+++G     + L+ I++    AIA TD  N+ +  +  +   +       
Sbjct: 341 VELHAHTKMSVMDGVSDPIDYLELISSWNHKAIAFTDHTNVQAFPDIYKALNSVNKKRSD 400

Query: 67  ---IQPIIGCQLDIDMQD 81
              I+ I G ++++   D
Sbjct: 401 QDKIKAIYGLEMNMLNND 418


>gi|5912317|emb|CAB56101.1| DNA polymerase III alpha subunit [Rickettsia rickettsii]
          Length = 360

 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 88/203 (43%), Gaps = 7/203 (3%)

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I ++L AIKGV     + + +       F S+ DF  R+  K +N ++LE+L+ +G  
Sbjct: 42   GAIIFALGAIKGVTPNFGKLVTDERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCF 101

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R+QLL S+  +  Y+    + + +   ++    K +      L      + +  
Sbjct: 102  DELHDNRLQLLSSIPKLLSYSTAYHEEQESNQFSL---IKVSSLSPTILVSSDYADKNTL 158

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGN-NIRLAAMVVSKQQKKT 1009
               E   +G + S HPL  Y+ I  ++ I    +       G   + LA ++  K  + +
Sbjct: 159  AFYEFEAMGLFISNHPLTEYQEIFSRLNILNTADLHNNLPDGTNRVNLAGVIQKKDSRMS 218

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
             +G R   +  S+P   +E + F
Sbjct: 219  ARG-RFVTLVLSDPENIFELSIF 240


>gi|294660232|ref|NP_852876.2| DNA polymerase III subunit alpha polC/Gram positive-type [Mycoplasma
            gallisepticum str. R(low)]
 gi|284811887|gb|AAP56444.2| DNA polymerase III alpha subunit polC/Gram positive-type [Mycoplasma
            gallisepticum str. R(low)]
 gi|284930337|gb|ADC30276.1| DNA polymerase III alpha subunit polC/Gram positive-type [Mycoplasma
            gallisepticum str. R(high)]
          Length = 1494

 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 135/932 (14%), Positives = 299/932 (32%), Gaps = 202/932 (21%)

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSI---VLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
              L I+ +DNL    Q          +   ++    A+G + L +LVS      Q   S 
Sbjct: 616  ANLRINDEDNLDQITQSNENLFNRIRLRKALVYAKNAQGLKALYKLVSLASTK-QFYGSQ 674

Query: 130  RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT-------FKKLFGDRL 182
            ++  S L++   + LI  +   +G I  A  +++++   K +            LF   L
Sbjct: 675  KLFWSDLEKYQNDLLI-SSHPINGHIVHAAKYDTNENLRKLIKKHSFVLVPLPSLFKQDL 733

Query: 183  Y---VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHST 238
            Y   + L           ++++ +    ++    ++ + +L +E  + +D L+ A     
Sbjct: 734  YKKNIELTHVHDL----INRIISICEQEKILYTFSSAAHYLKQEQKQFYDCLITAEITGK 789

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFIL------QVHAPIL 292
             +       ++ +  + +     +       +     EI  +  +          +   L
Sbjct: 790  KLHHFYDRDLSTNQNVPDLHIRKNNEVYHDFSFIQDQEILAKLIYRNGEKIANLFNDEGL 849

Query: 293  PRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMK 352
              F +K      +  +++L        +                 + R+++ELN I +  
Sbjct: 850  LPFPKKLHPPKIEGSDDKLIELVWNKAKELFGD------EINPIIKSRIEYELNAIIKNG 903

Query: 353  FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------- 399
            +   + +    ++ +  +   VG  RGS   S+ A    I++++PL+             
Sbjct: 904  YGIIYWLAHLLVKKSNDDGYLVG-SRGSVGSSIVALLAGISEVNPLQPYYYCKKCKKTKF 962

Query: 400  ----------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
                                         ++ F  F+       PD D++F    + +  
Sbjct: 963  VDNVDDGHDLVNKPCELLDCDGEMRGEGHNIPFASFMGFKGEKTPDIDLNFSSFYQAKAH 1022

Query: 432  RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQA 491
             YV+  +G     +  T  ++Q K A +                        A       
Sbjct: 1023 DYVRELFGESHTTRCGTISTMQDKTAYK-----------------------IAKDYLEIT 1059

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDV 549
            I ++   R A             + ++  + R    H  GI++  +   +    P+    
Sbjct: 1060 IGEEESERLAG----------WYASEMSEIKRTTGQHPGGILVFPKDKEIEDFCPVNYPA 1109

Query: 550  RSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDH 606
                     + F  +++    L+K D L  +  T+L+   +         ++        
Sbjct: 1110 DDKSSKWKTSHFKFEYLHDT-LLKLDILSQEDPTILKYLYEIT--NVKPEEIPNNDPKVL 1166

Query: 607  ETYHLLTTKGTLG-------------IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPG 653
              ++L      +              I +  +   R+ L+  +P  + D+I +  L    
Sbjct: 1167 SLFNLDHCLENVNNNPILKDSTGALGIPEFGTKITREILKIAKPASVADLIRVSGLSHG- 1225

Query: 654  PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                        N  + IV  H  ++ ++     ++ Y   +        G     A  +
Sbjct: 1226 ------TDVWTNNAADLIVDKHYKLNEVIACRDDIMTYLSSL--------GIENQIAFNI 1271

Query: 714  RRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVIS 773
               + K  K + +     +     +  +S+    +  ++      Y F K+HA AY +++
Sbjct: 1272 MEDVRKGKKLKPE-----YEKIMQEFNVSQDYIDSCNKI-----KYMFPKAHATAYVLMA 1321

Query: 774  YQTAWMKTHYPVEFLAASMTLEMDNVE--------------------------------- 800
            ++ AW K HYP  F AA  + ++   +                                 
Sbjct: 1322 WKIAWFKVHYPEAFYAAIFSFKVKEHDIETCINGGIRAITKRYNEIKSLINKTKFAKNKS 1381

Query: 801  ------------KIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGT 847
                           +   +  + NI++   S+       F V +N+IY     I G+G 
Sbjct: 1382 ELTLNKKDEDLMPTYELYLEMLERNIKLEQVSLEHSDALHFVVKNNKIYPPFNTINGLGD 1441

Query: 848  TTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
              A+ I++   ++ F S  D  ++    KLN+
Sbjct: 1442 EIAKLIVKKRNEEGFKSQADLKTKC---KLNK 1470



 Score = 41.3 bits (95), Expect = 0.98,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 17  HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA--CAA---GIQPII 71
           H+  S+ +G   ++++      ++   IAITD+  + +   F+  A          +   
Sbjct: 327 HTKMSVHDGLNDVDDLKKFCEENKLKDIAITDSGVVQA---FADLASWKEKTNSETKVHY 383

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G ++D+    N  + N        +  ++ 
Sbjct: 384 GLEVDLFDDRNFIVKNNKDLKLDQLSFVIF 413


>gi|5912325|emb|CAB56082.1| DNA polymerase III alpha subunit [Rickettsia montanensis]
          Length = 360

 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 88/203 (43%), Gaps = 7/203 (3%)

Query: 833  NRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
              I ++L AIKGV     + + +       F S+ DF  R+  K +N ++LE+L+ +G  
Sbjct: 42   GAIIFALGAIKGVTPNFGKLVTDERKARGAFKSITDFIERLPPKSINSKLLENLIKSGCF 101

Query: 892  DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
            D    +R+QLL S+  +  Y+    + + +   ++    K +      L      + +  
Sbjct: 102  DELHDNRLQLLSSIPKLLSYSTSYHEEQESNQFSL---IKVSSLSPTILVSSDYADKNTL 158

Query: 952  FENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEES-VATIRGN-NIRLAAMVVSKQQKKT 1009
               E   +G + S HPL  Y+ I  ++ I    +       G   + LA ++  K  + +
Sbjct: 159  AFYEFEAMGLFISNHPLTEYQEIFSRLNILNTADLHNNLPDGTNRVNLAGVIQKKDSRMS 218

Query: 1010 RKGSRIGWVTFSEPAKEYEANFF 1032
             +G R   +  S+P   +E + F
Sbjct: 219  ARG-RFVTLVLSDPENIFELSIF 240


>gi|325479569|gb|EGC82665.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
            prevotii ACS-065-V-Col13]
          Length = 1369

 Score =  168 bits (426), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 123/902 (13%), Positives = 276/902 (30%), Gaps = 168/902 (18%)

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            I + +  K+ +          S+ +      G + L +L+S   + +      +  +S L
Sbjct: 521  ISLSNINKLKSYRPKAKHEYFSVTVYAKNKTGLKNLYKLISESRM-NHFNNEAKTPISVL 579

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFN----SSQVAEKRLLTFK----KLFGDRLYVNLQR 188
            ++   EGLI+ +G   G +                      ++     +F D     + +
Sbjct: 580  EKY-REGLIVGSGADEGILFYYLAQGRNKSDINKIRDMFDFYQLAPLGVFSD----EINK 634

Query: 189  HRGYD----RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             R  D    R     ++ +A       VAT    +L ++DY           + +   + 
Sbjct: 635  GRLRDFDQVRQINKNILAMAKEDNKLAVATGAVRYLEKDDYILR--------NILHKGQY 686

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                  +     R+    +         +  ++  R    +      +    +       
Sbjct: 687  FKYHESEPLYYFRTTKEMLDEFSYLTPLDQEDVVIRNPKKIVELIEDIRPIPKGTFPPKI 746

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            +  + ELR                      +    RL+ ELN I    ++  ++I    +
Sbjct: 747  EGSDKELRETCFNKAHSIYGDPL------PKIVEDRLNRELNSIISNGYAVLYIIAKKLV 800

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------- 399
              +  +   VG  RGS   S  A    IT+++PL                          
Sbjct: 801  GKSNDDGYLVG-SRGSVGSSFAATMADITEVNPLSPHYVCPSCKHSEFFEDDLLGAGIDY 859

Query: 400  ----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
                             ++ FE FL  +    PD D++F  + +  + +Y +  +G  +V
Sbjct: 860  PDKVCPECGTMMKKDGHNIPFEVFLGFEGDKEPDIDLNFAGEYQPTIHKYTEELFGEGKV 919

Query: 444  AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARL 503
             +  T G++Q   A   + +  +                                     
Sbjct: 920  FRAGTIGAIQDNTAFGYIKKYSED----------------------------------YD 945

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMYRDVRSDL---PVTQF 558
             + +  ++ +I + L+ + R    H  G+++    +    + P+             T F
Sbjct: 946  VEFTNAQIRKIQRGLKDVKRTTGQHPGGLIVVPDDIEIFDICPIQYPADDGRGDIKTTHF 1005

Query: 559  NMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTL 618
                + +  L+K D LG    ++++   D        +++++      + +    T    
Sbjct: 1006 TYNMMHET-LLKLDLLGHDVPSIIRALQDLTG--TNPLEITMGDPKVMKIFSSTETLDIK 1062

Query: 619  GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLI 678
              F     G    +     + +  +   +    P     +   +   +G +  ++    +
Sbjct: 1063 HDFSNNEIGTLG-IPEFGTNFVRGM---LKDAYPTKFSEMTRISGLSHGTDVWLNNAQDL 1118

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
                  +   II     +  A +  G    ++  +   + K      +       S   +
Sbjct: 1119 VRNGTASFDEIISTRDDIMNALIQQGLDKKKSFSIMEKVRKGKPLSDEIL-----SYMRE 1173

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
            N + +    +  ++      Y F K+HA AY ++SY+ A+ K +YP  F A     ++++
Sbjct: 1174 NNVPEWYIESCLKI-----QYLFPKAHAVAYCLMSYRIAYYKVYYPEAFYATYYNTKIND 1228

Query: 799  VEKIKKFC--------------------------------QDARQFNIQIMPPSVNTPCV 826
             +                                      ++    +I++    +     
Sbjct: 1229 FKYSTIIKGLESIQKALDEVRDSFDLSQRDKQIRTVLEVAEEMAARDIKLEKADIYKSDA 1288

Query: 827  -DFKVGDNR--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
              F + D +  I   L+++  V    A  I+       F S+ED   R     +N+  L 
Sbjct: 1289 TKFLLSDRKGYILPPLSSVDDVSEAMAYDIVRERDKGEFISIEDLKQRTS---VNKNALN 1345

Query: 884  SL 885
            SL
Sbjct: 1346 SL 1347



 Score = 66.0 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 42/88 (47%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L+VH+  + L+G +   ++++ + A +  A+ ITDT  L +  +        GI+ + 
Sbjct: 261 VELEVHTKMTNLDGFVDNKDLINTLKAWKMDAVGITDTETLQALPDLYDALSKEGIRMLP 320

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
           G +L +   +   +TN      P V  I
Sbjct: 321 GAELLLVEDELRVLTNLSDKNIPDVSDI 348


>gi|5912313|emb|CAB56110.1| DNA polymerase III alpha subunit [Rickettsia typhi]
          Length = 359

 Score =  168 bits (425), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 90/205 (43%), Gaps = 7/205 (3%)

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
             ++ I ++L AIKGV     + + +       F S+ DF  R+  K +N ++LE+L+ AG
Sbjct: 39   DESTIIFALGAIKGVTPNFGKLVTDERKARGAFKSITDFIERLPPKSINSKLLENLIKAG 98

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSS 949
              D    +R+QL  S+  +  Y+    + + +   ++    K +      L   +  + +
Sbjct: 99   CFDELHDNRLQLFLSVPKLIAYSTSYHQEQESNQFSL---IKVSSLSPTILVSSNYADKN 155

Query: 950  VRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVA-TIRGNN-IRLAAMVVSKQQK 1007
                 E   +G + S HPL  Y+ I  ++ I    +       G N + LA ++  K  +
Sbjct: 156  TLAFYEFESMGLFISNHPLTEYQEIFSRLNILNTRDLYNKLPNGTNQVTLAGVIQKKDSR 215

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             + +G R   +  S+P   +E   F
Sbjct: 216  MSARG-RFVTLVLSDPENIFELTIF 239


>gi|256384095|gb|ACU78665.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            mycoides subsp. capri str. GM12]
 gi|256384927|gb|ACU79496.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            mycoides subsp. capri str. GM12]
 gi|296455696|gb|ADH21931.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic
            Mycoplasma mycoides JCVI-syn1.0]
          Length = 1482

 Score =  168 bits (425), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 143/911 (15%), Positives = 290/911 (31%), Gaps = 199/911 (21%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEI-GTEGLIMLTGGSSG 153
                  +LV    G + L +LV++ +  +      +I    L +I     L+      + 
Sbjct: 631  KGFHTNILVKNQAGLKELYKLVTKSHTTN-FYAFPKIFKDDLIQIKQNNNLLFGASCVNS 689

Query: 154  PIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR---------HRGYD----RYRESQV 200
             I      ++ +  ++ +  +        Y+ +Q          +   D    +   + +
Sbjct: 690  EIFELARTSTLENLKQAISFYD-------YIEIQPISVYKNLLQNDSLDLEQLKQIITNI 742

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-----HSTVVSQKDRPRVTPDHYLK 255
            + +A      +VA+++  + + E  +  +V +           +    +R +  PD +L+
Sbjct: 743  INIAKQENKLIVASSDCHYTNPELKQIREVYINAKGLGGIRHPLFDFNNRVKDYPDQHLR 802

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
               EM++ F  L +       +    + I  +    +    +            +L++K 
Sbjct: 803  TTKEMLNEFEWLNDDDLINEIVITNSNKIADMIDSNVIPIKDGLFTPKIANVNEKLKDKC 862

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
                +    +         +   +RL+ EL  I +  F+  + I    ++ +  +   VG
Sbjct: 863  YQTAKQMYGEML------PEIVEKRLEKELGSITKHGFAIVYWISHLLVKQSLDDGYLVG 916

Query: 376  PGRGSGAGSVTAYALTITDIDPLR------------------------------------ 399
              RGS   S  A    IT+++PL+                                    
Sbjct: 917  -SRGSVGSSFVATMAQITEVNPLKAHYRCLNCKYSDFNTDPTYKCGYDLPEKNCPDCNQK 975

Query: 400  -----FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +++   + +  +G   V +  T  ++  
Sbjct: 976  LIGDGHDIPFETFLGFDGDKVPDIDLNFSGEYQNQAHNFTKKMFGENNVFRAGTISTVAE 1035

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V                                      +  ++ P    +  +
Sbjct: 1036 KTAFGYVKTYF-------------------------------EETKKDVSLPRKTEINRL 1064

Query: 515  SQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLI 569
            ++  +G+ R    H  GI+I   +  +    P+             T F+   I    L+
Sbjct: 1065 AKLAQGVKRTTGQHPGGIIILPNEYEIEDFTPVNYPADDLNSTWKTTHFDFHSIHD-NLL 1123

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGT------------ 617
            K D LG    T L+   D        +D   IP DD   Y L ++               
Sbjct: 1124 KMDILGHDDPTALKMLRDLTN-----IDPITIPTDDKNVYSLFSSLQALNLTSDKINDEI 1178

Query: 618  ---LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
               +GI +  +  +R  L+  QP    D++ +  L          V+             
Sbjct: 1179 TGAIGIPEFGTGFVRNMLKETQPKTFADLVQISGLSH-----GTDVWLGNAR-------- 1225

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
              LI     +   VI  ++ +M     + G   S A ++  ++ K    + +     +I 
Sbjct: 1226 -DLIKDKKADISTVIGCRDDIMVYLINM-GLESSLAFMIMESVRKGKGLKKE-----WID 1278

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               +  +      +  ++      Y F K+HA AY +++Y+ AW K +YP E+ A  +T 
Sbjct: 1279 VMKQYNVPDWYIDSCLKI-----KYMFPKAHATAYVLMAYRIAWYKIYYPTEYYATYLTT 1333

Query: 795  EMDNVE------------------------------------KIKKFCQDARQFNIQIMP 818
              D  +                                     + +   +     I+   
Sbjct: 1334 RADVFDLKTALGGYDAVLLKLKSQQQRVKNGEKLSKKEEDLEVVYEVLLEMFARGIKFSN 1393

Query: 819  PSVNTPCV-DFKVG---DNR--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
                      FKV    DN   I      I  +G   A  I+ A   KP  S+ D  +R 
Sbjct: 1394 IDFEKSEATKFKVDILQDNSKIIIPPFNVIDSLGEAVALSIINARNTKPITSVNDLKNRT 1453

Query: 873  DSKKLNRRVLE 883
             + +   ++ E
Sbjct: 1454 QTTQTQIKIFE 1464



 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA----CAA-- 65
           V L  H+  S+++G     + L+ I++    AIA TD  N+ +  +  +           
Sbjct: 341 VELHAHTKMSVMDGVSDPIDYLELISSWNHKAIAFTDHTNVQAFPDIYKALNSINKKRSD 400

Query: 66  --GIQPIIGCQLDIDMQD 81
              I+ I G ++++   D
Sbjct: 401 QDKIKAIYGLEMNMLNND 418


>gi|331703357|ref|YP_004400044.1| DNA polymerase III subunit alpha [Mycoplasma mycoides subsp. capri LC
            str. 95010]
 gi|328801912|emb|CBW54065.1| DNA polymerase III alpha chain [Mycoplasma mycoides subsp. capri LC
            str. 95010]
          Length = 1482

 Score =  167 bits (423), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 143/911 (15%), Positives = 288/911 (31%), Gaps = 199/911 (21%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEI-GTEGLIMLTGGSSG 153
                  +LV    G + L +LV++ +  +      +I    L +I     L+      + 
Sbjct: 631  KGFHTNILVKNQAGLKELYKLVTKSHTTN-FYAFPKIFKDDLIQIKQNNNLLFGASCVNS 689

Query: 154  PIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR---------HRGYD----RYRESQV 200
             I      ++ +  ++ +  +        Y+ +Q          +   D    +   + +
Sbjct: 690  EIFELARTSTLENLKQAISFYD-------YIEIQPISVYKNLLQNDSLDLDQLKQIITNI 742

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-----HSTVVSQKDRPRVTPDHYLK 255
            + +A      +VA+++  + + E  +  +V +           +    +R +  PD +L+
Sbjct: 743  INIAKQENKLVVASSDCHYTNPELKQIREVYINAKGLGGIRHPLFDFNNRVKDYPDQHLR 802

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKA 315
               EM+  F  L +       +    + I  +    +    +            +L++K 
Sbjct: 803  TTKEMLKEFEWLNDDDLINEIVITNSNKIADMIDSNVIPIKDGLFTPKIANVNEKLKDKC 862

Query: 316  VAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
                +    +         +   +RL+ EL  I +  F+  + I    ++ +  +   VG
Sbjct: 863  YQTAKQMYGE------TLPEIVEKRLEKELGSITKHGFAIVYWISHLLVKQSLDDGYLVG 916

Query: 376  PGRGSGAGSVTAYALTITDIDPLR------------------------------------ 399
              RGS   S  A    IT+++PL+                                    
Sbjct: 917  -SRGSVGSSFVATMAQITEVNPLKAHYRCLNCKYSDFNTDPTYKCGYDLPEKNCPNCNQK 975

Query: 400  -----FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                   + FE FL  D   +PD D++F  + +++   + +  +G   V +  T  ++  
Sbjct: 976  LIGDGHDIPFETFLGFDGDKVPDIDLNFSGEYQNQAHNFTKKMFGENNVFRAGTISTVAE 1035

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
            K A   V                                +  +        P    +  +
Sbjct: 1036 KTAFGYV---------------------------KTYFEETKKDASL----PRKTEINRL 1064

Query: 515  SQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLI 569
            ++  +G+ R    H  GI+I   +  +    P+             T F+   I    L+
Sbjct: 1065 AKLAQGVKRTTGQHPGGIIILPNEYEMEDFTPVNYPADDLSSTWKTTHFDFHSIHD-NLL 1123

Query: 570  KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGT------------ 617
            K D LG    T L+   D        +D   IP DD   Y L ++               
Sbjct: 1124 KMDILGHDDPTALKMLRDLTN-----IDPITIPTDDKNVYSLFSSLQALNLTSDKINDEI 1178

Query: 618  ---LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
               +GI +  +  +R  L+  QP    D++ +  L          V+             
Sbjct: 1179 TGAIGIPEFGTGFVRNMLKETQPKTFADLVQISGLSH-----GTDVWLGNAR-------- 1225

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
              LI     +   VI  ++ +M     + G   S A ++  ++ K    + +     +I 
Sbjct: 1226 -DLIKDKKADISTVIGCRDDIMVYLINM-GLESSLAFMIMESVRKGKGLKKE-----WID 1278

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
               +  +      +  ++      Y F K+HA AY +++Y+ AW K +YP E+ A  +T 
Sbjct: 1279 IMKQYNVPDWYIDSCLKI-----KYMFPKAHATAYVLMAYRIAWYKIYYPTEYYATYLTT 1333

Query: 795  EMDNVE------------------------------------KIKKFCQDARQFNIQIMP 818
              D  +                                     + +   +     I+   
Sbjct: 1334 RADVFDLKTALGGYDAVLLKLKSQQQRVKNGEKLSKKEEDLEVVYEVLLEMFARGIKFSN 1393

Query: 819  PSVNTPCV-DFKVG---DNR--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
                      FKV    DN   I      I  +G   A  I+ A   KP  S+ D  +R 
Sbjct: 1394 IDFEKSEATKFKVDILQDNSKIIIPPFNVIDSLGEAVALSIINARNTKPITSVNDLKNRT 1453

Query: 873  DSKKLNRRVLE 883
             + +   ++ E
Sbjct: 1454 QTTQTQIKIFE 1464



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG----- 66
           V L  H+  S+++G     + L+ I++    AIA TD  N+ +  +  +   +       
Sbjct: 341 VELHAHTKMSVMDGVSDPIDYLELISSWNHKAIAFTDHTNVQAFPDIYKALSSVNKKRND 400

Query: 67  ---IQPIIGCQLDIDMQD 81
              I+ I G ++++   D
Sbjct: 401 QDKIKAIYGLEMNMLNND 418


>gi|239618295|ref|YP_002941617.1| DNA-directed DNA polymerase [Kosmotoga olearia TBF 19.5.1]
 gi|239507126|gb|ACR80613.1| DNA-directed DNA polymerase [Kosmotoga olearia TBF 19.5.1]
          Length = 914

 Score =  167 bits (423), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 182/722 (25%), Positives = 314/722 (43%), Gaps = 83/722 (11%)

Query: 305  KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
                 ELR  A+ GL+          G   + Y +RLD EL ++    F  YFL++A+ +
Sbjct: 181  HTTIEELRALAIEGLKEA--------GITDKKYLERLDKELKIVQDKGFQDYFLLIAEIV 232

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
            + AK     VGPGRGS  GS+   AL IT +DPL++ L FERFLNP R   PD D+D   
Sbjct: 233  KLAKSIGCWVGPGRGSAVGSLLVRALGITAVDPLKYDLYFERFLNPAREDFPDIDLDVED 292

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            ++R E+I  +   +  E+V  I T G+   ++A R + R +++  S+   +  LI     
Sbjct: 293  EKRPELIHKITEHFSSEKVCLIQTMGTFSFRSAARALARKMKVSESE---IRNLISWSRN 349

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVP 544
                  +++ D R          +  + + + +L GLY   S HAAGI++ +  L  ++P
Sbjct: 350  GKFLPSSLSKDKR----------MTSIFKFANQLSGLYSTLSVHAAGIILSEEDLRTIIP 399

Query: 545  MYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFD 604
            + +    ++ ++Q++MK +E  G  K D LGL+ L+LL+K            +      D
Sbjct: 400  LRKS--DEIYISQWDMKSLEYLGFQKVDLLGLRNLSLLRKL-------CEGKEPWNKNPD 450

Query: 605  DHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV---Y 661
            + +++ +L+   T GIFQ+E +     ++ + P+ +ED+   ++L RPGPI + +     
Sbjct: 451  NRKSFAILSRGYTTGIFQIEGNEATAIIKKISPENLEDLAIGIALNRPGPISSGITREYI 510

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
              R+  K             L++T G++I+QEQV+++A         E ++LRRA+ KK 
Sbjct: 511  RRRRFLKAIGNYTAGEHIASLEDTLGLLIFQEQVIRLAISELKLKPEEGELLRRALSKKD 570

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
             E ++K  E     + +   +        E L  F+ Y FNKSH+ AY+++SY  A+ K 
Sbjct: 571  TETIEKLAEVVQERSPE---NSEKISKYLEFLRDFSGYSFNKSHSIAYSLLSYWIAYHKA 627

Query: 782  HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLA 840
            + PV F    +                  +         +      F  G+ N I     
Sbjct: 628  NNPVLFYKLLI-----------PLMDSGSRLRAAAEARELGLKFSIFNPGNRNNIIL--- 673

Query: 841  AIKGVGTTTARHIMEASADKPFDSLEDFCS--RVDSKKLNRRVLESLVFAGALDCFGYSR 898
                V       + +    KP    E+F +  R +   L    LE L+  G  D +G SR
Sbjct: 674  ----VPGDFRPSLTKIDTSKPPKE-ENFFAYVRKNRNYLTAADLEFLIKTGFFDQYG-SR 727

Query: 899  MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRV 958
            ++LL+ ++N             +  +         F  K       +E+   +   E   
Sbjct: 728  IKLLKDINNAL-----------SGVDPDLKSVLKVFGYKEEEITEEMESLVEKAAMEFET 776

Query: 959  LGFYFSGHPLDVYKPILRKMGIKGYE-ESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             GF  +      ++  L +      +    + + G+   +AA V          G +  +
Sbjct: 777  FGFNLT-----EFEVELDEKNKDFVDGTLTSLVAGSCTGIAAFVA-----INASGKK--F 824

Query: 1018 VT 1019
            +T
Sbjct: 825  IT 826


>gi|85057593|ref|YP_456509.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom
            phytoplasma AYWB]
 gi|84789698|gb|ABC65430.1| DNA polymerase III alpha subunit [Aster yellows witches'-broom
            phytoplasma AYWB]
          Length = 1572

 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 129/932 (13%), Positives = 277/932 (29%), Gaps = 158/932 (16%)

Query: 83   LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142
             ++  +    +     I +LV+   GY+ L EL+S   L     +  R+  S L  +  +
Sbjct: 661  FELQEKIDHKYERPYHINILVANQTGYRNLFELLSNA-LTKDFNKRPRVLKSNLANL-RQ 718

Query: 143  GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-----HRGYD---- 193
            GL++ +G  +  I       +    ++ +  +        Y+ +Q      H  +D    
Sbjct: 719  GLLVGSGCMNSNIFEIALNQNIFKLQRAISFYD-------YIEVQPPQAYKHLIHDLGKN 771

Query: 194  -----RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH-----STVVSQK 243
                       ++  A      ++AT +  ++   + +  ++ ++          +   +
Sbjct: 772  GIQIIETTLKTIITEAQKQAKIVIATGDVHYIHPWEKDYREIYISAKMVGGGLHKLSRYE 831

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDI 303
            ++                  F      +   V                    +    DD 
Sbjct: 832  NKNLPENHLLTTQEMIDAFAFLHDENLIYKIVISNTHLLNSKIEKIKSFSSELFSFKDDA 891

Query: 304  QK------EEENELRNKAVAGLEVRL--AQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
             K        + E++    A ++         + K    Q+ +  +    N       + 
Sbjct: 892  FKKNLQIPSIKEEIKRLVDAKVKQMYGSPPHPLIKKRLDQELKSIIGETKNEKTNQNIAP 951

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
             + +    ++ +      VG  RGS   S+ A  L IT+++PL+       +      ++
Sbjct: 952  VYYLSHLLVKNSLAKGYLVG-SRGSIGSSLVATMLEITEVNPLK----PHYYCPQCNYTI 1006

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV--- 472
                    +++  +      +K   + V       ++          +       +    
Sbjct: 1007 VQLKKPQEKEQYYKPEEEKYHK-ELDNVFSGYDLPNMPCPKCNAQFKKNGHDIPFETFLG 1065

Query: 473  ---------DRLCKLIPNDPAHPVSLQAIADDSRFR--------------------EARL 503
                     D          AH    + + +   FR                    E + 
Sbjct: 1066 FEGNKTPDIDLNFAGDYQSQAHNYIKELLGEKHAFRAGTIQTVAQRNAYGYTMGFVEEKQ 1125

Query: 504  ADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVRS-DLPVTQFNM 560
                  ++ +I+ K++G+ R    H  GIV+      + ++ P+       +   T F+ 
Sbjct: 1126 KQWRKQKVAQIANKIQGVKRSNGQHPGGIVVVPPDRSIYEVTPVQYPANDTNWKTTHFDY 1185

Query: 561  KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL---SLIPFDDHETYHLLTT--- 614
               E   L K D LG     +++  +D++ +            IP DD E Y L +    
Sbjct: 1186 HSFE-QNLFKLDILGHDDPMMIKFLMDYVKENSGNFPFTRAQDIPVDDPEVYKLFSNEFK 1244

Query: 615  ------------------KGTLGIF--QLESSGMRQALEGMQPDCIEDIIALVSLYRPGP 654
                                   IF  Q+            +     +  ALV +   G 
Sbjct: 1245 INSSVNSGNKITIDSLGIPEFGTIFVKQMLKDLTTTKQNSQKKAIKINFAALVKI--SGL 1302

Query: 655  IDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLR 714
                 V+N                         +I  ++ +  +     G    +A  + 
Sbjct: 1303 SHGTDVWNQNARDAINKTGEFEKYKNKTISFDDIIGCRDDI-MLQLQEKGIDPLKAFDIM 1361

Query: 715  RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
              + K   ++  +  +++                 +   A    Y F K+HA AY +++ 
Sbjct: 1362 EFIRKGKPQDDFQTWKKYKQEMK------DKVEAWYIDSAAKIKYLFPKAHATAYVIMAL 1415

Query: 775  QTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDAR------------------------ 810
            + AW K H P+ F +   +   +  +       D +                        
Sbjct: 1416 RIAWFKMHAPLAFYSGYFSKRTEQFDHQTMISNDIKIIKEKLNKLAELKKSKKIKAKEEA 1475

Query: 811  -----QFNIQIMPPSVNTPCVDF--------KVGDNR-IYYSLAAIKGVGTTTARHIMEA 856
                 +   +++        VDF        K+ D   +   L ++ G+G   A  I+EA
Sbjct: 1476 LINTLKIAEEMVHRGFKFLTVDFNKSDVSVLKIEDGGFLRMPLLSLDGLGLIAANKIVEA 1535

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
              +KPF    DF +R    K+N+ +   L  A
Sbjct: 1536 RQEKPFT-KADFATR---SKINKTI---LAKA 1560



 Score = 68.7 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 38/88 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           +    H+  S L+   S    L    +    AIA TD + +++  E +Q +    I+PI 
Sbjct: 389 IEFHTHTKMSNLDAINSAKEYLQIAESWGHEAIAFTDHDGIYAYPEINQHSKNKKIKPIY 448

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
           G ++D   +  + +TNQ +        +
Sbjct: 449 GVEVDFIEEKPIYITNQKEDNLEKDFVL 476


>gi|257066105|ref|YP_003152361.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548]
 gi|256797985|gb|ACV28640.1| DNA polymerase III, alpha subunit [Anaerococcus prevotii DSM 20548]
          Length = 1365

 Score =  167 bits (422), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 128/907 (14%), Positives = 280/907 (30%), Gaps = 178/907 (19%)

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            I++    K+ +          S  +      G + L +L+S   + +      +  +S L
Sbjct: 517  INLSTINKLKSHWPKSKHEYFSATVYAKDKVGLKNLYQLISESRM-NYFNSEAKTPISVL 575

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY----VNLQRH--- 189
            ++   EGL++ +G   G +        S   ++ L   + LF    Y    + +      
Sbjct: 576  EKY-REGLLVGSGSDEGILFSHLQNKRS---KRDLNRIRDLF--DFYQMAPLGIYNDMVN 629

Query: 190  ----RGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
                R  D+      Q++  A       VAT    +L ++DY   +         ++ + 
Sbjct: 630  KGKIRDIDQVIEINKQILDFAKEDNKLAVATGAVRYLEKDDYILRN---------ILHKG 680

Query: 244  DRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE-IARRCSFILQVHAPILPRFIEKECDD 302
               R   D  L        +  D         E +  R    +      +    +     
Sbjct: 681  QYFRYHEDEPLYYFRTTREMMDDFSYLNPIDAEDVVIRNPRKIVDMIEDIRPIPKGTFPP 740

Query: 303  IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +  + ELR+   A                 +    RL+ ELN I    ++  ++I   
Sbjct: 741  KIEGSDKELRDTCFAKAHSIYGDPL------PKIVEDRLNRELNSIISNGYAVLYIIAKK 794

Query: 363  FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR----------------------- 399
             +  + ++   VG  RGS   S  A    IT+++PL                        
Sbjct: 795  LVGKSNEDGYLVG-SRGSVGSSFAATMADITEVNPLSPHYVCPNCKHSEFFEEDLLGAGI 853

Query: 400  ------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE 441
                               ++ FE FL  +    PD D++F  + +  + +Y +  +G  
Sbjct: 854  DYPDKACPECGTMMKKDGHNIPFEVFLGFEGDKEPDIDLNFAGEYQPTIHKYTEVLFGEG 913

Query: 442  RVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREA 501
            +V +  T G++Q   A   + +  +                                   
Sbjct: 914  KVFRAGTIGAIQDNTAFGYIKKYSED---------------------------------- 939

Query: 502  RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMYRDVRSD---LPVT 556
               + +  ++ +I + L+ + R    H  G+++    +    + P+          +  T
Sbjct: 940  YQVEFTNAQVRKIQRGLKDVKRTTGQHPGGLIVVPDDIDIFDICPIQYPADDGSGDIKTT 999

Query: 557  QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG 616
             F    + +  L+K D LG    ++++   D      +++               +    
Sbjct: 1000 HFTYNMMHET-LLKLDLLGHDVPSIIRALQDLTGTNPLEIT--------------MGDPD 1044

Query: 617  TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
             + IF    S   +            I    + +    + +       +  +   +S   
Sbjct: 1045 VMKIFSSTESLDIKHDFSNNEIGTLGIPEFGTNFVRSMLKDTFPTKFSEMTRISGLSHGT 1104

Query: 677  LIDPMLKET---QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
             +     +     G   + E +     +++       D  +     +   +     +  +
Sbjct: 1105 DVWLNNAQDLVRNGTAGFDEIISTRDDIMNALIQQGLDKKKSFSIMEKVRKGKPLSDEIL 1164

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
                +NG+ +    +  ++      Y F K+HA AY ++SY+ A+ K ++P  F A    
Sbjct: 1165 EYMRENGVPEWYIESCLKI-----QYLFPKAHAVAYCLMSYRIAYYKVYFPEAFYATYFN 1219

Query: 794  LEMDNVEKIKKF--------------------------------CQDARQFNIQIMPPSV 821
             ++++ +                                      ++     I++    +
Sbjct: 1220 TKINDFKYSTIIDGLESIQRALKEYAGNFDLSQRDKQIRTVLEVAEEMAAREIKLEKADI 1279

Query: 822  NTPCVD-FKVGDNR--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
                   F + D +  I   L+A+  V    A  I++      F SLED  +R     +N
Sbjct: 1280 YKSDAKKFLLSDRKGYILPPLSAVDDVSEAMAIDIVKEREKGEFISLEDLKTRTS---VN 1336

Query: 879  RRVLESL 885
            +  + SL
Sbjct: 1337 KNAINSL 1343



 Score = 64.8 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 38/85 (44%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L+VH+  + L+G +   +++  +   +  A+ ITDT  L    +  +     GI+ + 
Sbjct: 257 IELEVHTKMTNLDGFVDNKDLVSTLKNWKMGAVGITDTATLQGLPDLYEALSKEGIRMLP 316

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTV 96
           G +L +   +   +TN        +
Sbjct: 317 GAELLLVEDELRVLTNLSDREVSEI 341


>gi|218680309|ref|ZP_03528206.1| DNA polymerase III, alpha subunit [Rhizobium etli CIAT 894]
          Length = 179

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/207 (23%), Positives = 80/207 (38%), Gaps = 29/207 (14%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +     +  LQV S +S L GA S   +  + A     A+A+ D N+L   +   + A  
Sbjct: 1   MTSPARYAELQVTSHFSFLRGASSCEEMFAQAAIQGIEAVAVVDRNSLAGIVRAFEAAKT 60

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G++ I+GC+LD+                    SI++  +    Y RL  L+S       
Sbjct: 61  TGVRLIVGCRLDLADG----------------ASILVYPTDRAAYGRLCRLLSLGKKRGG 104

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            K    +  + L    ++GLI +               + +    RL   +   GDR Y+
Sbjct: 105 -KAKCILEWADLVAY-SDGLIGI----------LVPDEADETCGLRLRRLRDTLGDRAYL 152

Query: 185 NLQ-RHRGYDRYRESQVVQLAYTHELP 210
            L  R R  D+ R  ++  LA    +P
Sbjct: 153 ALTLRRRPNDQLRVHKLSNLAAQMRVP 179


>gi|5912340|emb|CAB56071.1| DNA polymerase III alpha subunit [Rickettsia felis]
          Length = 386

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 96/236 (40%), Gaps = 12/236 (5%)

Query: 805  FCQDARQFNIQIMPPSVNTPCVD-----FKVGDNRIYYSLAAIKGVGTTTARHIMEASA- 858
               ++ + + +     +     D     +    + I ++L AIKGV     + + +    
Sbjct: 35   LNHESMKMDSRFCGNDIKGSRNDIEDTGYDKEKSTIIFALGAIKGVTPNFGKLVTDERKA 94

Query: 859  DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKN 918
               F S+ DF  R+  K +N ++LE+L+ +G  D    +R+QL  S+  +  Y+      
Sbjct: 95   RGAFKSITDFIERLPLKSINSKLLENLIKSGCFDELHDNRLQLFSSISKLLAYSASYHAE 154

Query: 919  RTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKM 978
            + +   ++      + +    L      +++     E   +G + S HPL  Y+ I  ++
Sbjct: 155  QESNQFSLIKVSSLSPNI---LIASDYADNNTLAFYEFESMGLFISNHPLTQYQEIFSRL 211

Query: 979  GIKGYEES-VATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             I    +       G   + LA ++  K  + + +G R   +  S+P   +E + F
Sbjct: 212  NILNTADLHNNLPDGTNRVNLAGVIQKKDSRMSARG-RFVTLVLSDPENIFELSIF 266


>gi|318061956|ref|ZP_07980677.1| DNA polymerase III subunit alpha [Streptomyces sp. SA3_actG]
 gi|318079883|ref|ZP_07987215.1| DNA polymerase III subunit alpha [Streptomyces sp. SA3_actF]
          Length = 333

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 91/252 (36%), Gaps = 26/252 (10%)

Query: 5   LEKSPS-----FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
           + +SP      F HL+  S  S   GA     +  + A     A+A+TD + +  A+ F+
Sbjct: 1   MTRSPGLSGLGFAHLRTVSGNSARYGASHPEALAARAAERDMDAVALTDRDTVAGAVRFA 60

Query: 60  QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP---------FPTVPSIVLLVST-AEGY 109
           +     G++P+ G  L +D+         G+             + P +  L    A G+
Sbjct: 61  KACAEEGVRPLFGVDLAVDVPATRDARGGGRRRAPVRGGAFIDESAPRVTFLARDGARGW 120

Query: 110 QRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEK 169
             L  LV+  +   +  +   +          EGL +L G     I RA        A +
Sbjct: 121 ASLCALVTAAHARGE--RPPLLPWD---ANHGEGLTVLLG-PESDIGRALAAGRPDRAAR 174

Query: 170 RLLTFKKLFGDRLYVNLQRHR----GYDRYRE-SQVVQLAYTHELPLVATNNSLFLSEED 224
            L  +++ +GD L +    H     G    R  ++ V  A    +  V TN   +     
Sbjct: 175 LLAPWRERYGDALRLEAVHHGRGGTGPGSLRLAARTVGFAAEQGVRPVLTNAVRYADPGQ 234

Query: 225 YEAHDVLMAVAH 236
               DVL A   
Sbjct: 235 GRIADVLDAARR 246


>gi|167717944|ref|ZP_02401180.1| error-prone DNA polymerase [Burkholderia pseudomallei DM98]
          Length = 131

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 9   PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           P +  L   S++S L GA S   ++++ A      IAITD  +L  A      A A G+ 
Sbjct: 9   PDYAELFCRSNFSFLHGASSAEELVERAAKQGYRGIAITDECSLAGAPRMHVAAKAVGLP 68

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            ++G    +   D       G  P P    +VLL    EGY  L EL+S    ++  K +
Sbjct: 69  LVVGAYFGVTPDD----AAPGHDPGPGAFGLVLLAQNREGYGNLSELISW-RRMNAPKGT 123

Query: 129 VRICLSWL 136
            R+    L
Sbjct: 124 YRLTPRML 131


>gi|237749593|ref|ZP_04580073.1| predicted protein [Helicobacter bilis ATCC 43879]
 gi|229374811|gb|EEO25202.1| predicted protein [Helicobacter bilis ATCC 43879]
          Length = 175

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 90/179 (50%), Gaps = 4/179 (2%)

Query: 787 FLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVG 846
           F+   +T  + N EK+ ++  +A+   + ++ PS+N     F V +  + YSL A+KGVG
Sbjct: 1   FMCGLLTSAIGNEEKLAQYIYEAKGKGLNVLGPSINKSGYPFFVENGALRYSLRAVKGVG 60

Query: 847 TTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLD 906
               + I  A  +KPF  L DFC R   K +NR+ +E+L+FAGA+D FG +R  LL S+D
Sbjct: 61  IAAVKEIYRARKEKPFADLFDFCVRTSVKSVNRKTIEALIFAGAMDEFGENRATLLASVD 120

Query: 907 NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG 965
              ++A+    +  N     F  E    + K    +           +E+  LG YFS 
Sbjct: 121 VALEHAELFAGD--NDQLGFFLDE--GLTIKPKYAETEEMPLVDLLAHEKETLGIYFSD 175


>gi|212696923|ref|ZP_03305051.1| hypothetical protein ANHYDRO_01486 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676213|gb|EEB35820.1| hypothetical protein ANHYDRO_01486 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 1010

 Score =  164 bits (416), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 123/875 (14%), Positives = 269/875 (30%), Gaps = 161/875 (18%)

Query: 100 VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
           ++     +G + L +++S   +        +     L     EGLI+ +GG  G + +A 
Sbjct: 188 IIFAKNYQGLKNLYKIISDSRMK-YFNLEAKTPFD-LVRKNKEGLIIGSGGKDGLLFKAI 245

Query: 160 FFN-SSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPL 211
             + S +  +K    F         +F D L     R++        ++++L   H+  +
Sbjct: 246 RDDYSEEKIDKICEFFDFFQIEALGVFADDLENGSIRNKEQIIEINKKIIELGKKHDKLV 305

Query: 212 VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
           VAT +  ++ ++DY   ++L           K +     ++      +  +   D    L
Sbjct: 306 VATGSVRYMEKKDYVLRNIL----------HKGQFFHYRENNPLYYLKTTNEMLDEFYYL 355

Query: 272 ENTVEIARRCSFILQVHAPILPRFIEKE--CDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
           ++  ++       +++   I               +  +  L++             +I 
Sbjct: 356 DDKTKMEVVIDNTIKISDQIESVMPIPHETFPPKIEGSDKRLKDTTYE------KAISIY 409

Query: 330 KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                +  + RLD EL+ I    ++  ++I  + ++ + ++   VG  RGS   S  A  
Sbjct: 410 GDPLPELVKTRLDKELDSIISNGYAVLYIIAKELVEKSNRDGYLVG-SRGSVGSSFAATM 468

Query: 390 LTITDIDPLR-----------------------------------------FSLLFERFL 408
             IT+++PL                                            + FE FL
Sbjct: 469 ANITEVNPLAPHYICPNCKHSEFITDGSIGAGIDLPDKTCPKCGTEMNKDGHDIPFEVFL 528

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
             +    PD D++F  + +  + +Y +  +G  +V +  T G+++   A   + + ++  
Sbjct: 529 GFEGDKEPDIDLNFAGEYQPTIHKYTEELFGEGKVFRAGTIGTIKDNTAFGYIKKYMEDN 588

Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
              +                                     ++ +  + L  + R    H
Sbjct: 589 ELTLSNA----------------------------------QIRKYQRGLFDVKRTTGQH 614

Query: 529 AAGIVIGDRP--LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             G++I      +    P+                      +     L L  L     ++
Sbjct: 615 PGGLMIVPNDKEIYDFSPVQYPADDGKD--DIKTTHFTYNMMHGV-ILKLDLLGHDVPTI 671

Query: 587 DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
               Q     D   +  DD            + IF        +            I   
Sbjct: 672 IRSLQDLTNTDPLKLQMDDENV---------MNIFSSTKPLNIKYDFSNNEIGTLGIPEF 722

Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSI--HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            + +  G + +       +  +   +S      ++      +      +Q++     +  
Sbjct: 723 GTSFVRGMLKDTFPTKFSEMTRISGLSHGTDVWLNNAQDLVKSKTAGFDQIISTRDDIMN 782

Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
             ++     +++     K    K+         +        ++    +     Y F K+
Sbjct: 783 SLINLGLDKKKSFQIMEKVRKGKELSEETLSYMRENKVPDWYIDSCLKI----KYLFPKA 838

Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK---------IKKFCQDARQFNIQ 815
           HA AY ++SY+ A+ K +YP  F A   + ++++ +          I+    +  Q    
Sbjct: 839 HAVAYCLMSYRIAYYKVYYPKAFYATYFSTKLNDFQYSVIVKGLKSIQYALNEINQLEKP 898

Query: 816 IMPPS------------------------VNTPCVDFKV-GDNRIYYSLAAIKGVGTTTA 850
                                          +  V F +  D  I   L+A+  V    A
Sbjct: 899 TQREKNLRSLLEVAEEMAARDIKIKKADLYKSEAVKFILDEDGEILPPLSAVDDVSEAMA 958

Query: 851 RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           + I+E      F S+ED   R     LN+  L SL
Sbjct: 959 KDIVEEREKTKFISIEDLKKRTS---LNKNALNSL 990


>gi|325847082|ref|ZP_08169908.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481054|gb|EGC84099.1| DNA polymerase III, alpha subunit, Gram-positive type [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 1010

 Score =  164 bits (416), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 119/875 (13%), Positives = 268/875 (30%), Gaps = 161/875 (18%)

Query: 100 VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
           ++     +G + L +++S   +        +     + +   EGLI+ +GG  G + +A 
Sbjct: 188 IIFAKNYQGLKNLYKIISDSRMK-YFNLEAKTPFDLVSK-NKEGLIIGSGGKDGLLFKAI 245

Query: 160 FFN----SSQVAEKRLLTFK----KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPL 211
             +          +    F+     +F D L     R++        ++++L   H+  +
Sbjct: 246 RDDYSEEKIDEICEFFDFFQIEALGVFADDLENGSIRNKEQIIEINKKIIELGKKHDKLV 305

Query: 212 VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
           VAT +  ++ ++DY   ++L           K +     ++      +  +   D    L
Sbjct: 306 VATGSVRYMEKKDYVLRNIL----------HKGQFFHYRENNPLYYLKTTNEMLDEFYYL 355

Query: 272 ENTVEIARRCSFILQVHAPILPRFIEKE--CDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
           ++  ++       +++   I               +  +  L++             +I 
Sbjct: 356 DDQTKMEVVIDNTIKISDQIESIMPIPHETFPPKIEGSDKRLKDTTYE------KAISIY 409

Query: 330 KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                +  + RLD EL+ I    ++  ++I  + ++ + ++   VG  RGS   S  A  
Sbjct: 410 GDPLPELVKTRLDKELDSIISNGYAVLYIIAKELVEKSNRDGYLVG-SRGSVGSSFAATM 468

Query: 390 LTITDIDPLR-----------------------------------------FSLLFERFL 408
             IT+++PL                                            + FE FL
Sbjct: 469 ANITEVNPLAPHYICPNCKHSEFITDGSIGAGIDLPDKTCPKCGTEMNKDGHDIPFEVFL 528

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
             +    PD D++F  + +  + +Y +  +G  +V +  T G+++   A   + + ++  
Sbjct: 529 GFEGDKEPDIDLNFAGEYQPTIHKYTEELFGEGKVFRAGTIGTIKDNTAFGYIKKYMEDN 588

Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
              +                                     ++ +  + L  + R    H
Sbjct: 589 ELTLSNA----------------------------------QIRKYQRGLFDVKRTTGQH 614

Query: 529 AAGIVIGDRP--LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
             G++I      +    P+                      +     L L  L     ++
Sbjct: 615 PGGLMIVPNDKEIYDFSPVQYPADDGKD--DIKTTHFTYNMMHGV-ILKLDLLGHDVPTI 671

Query: 587 DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
               Q     D   +  DD            + IF        +            I   
Sbjct: 672 IRSLQDLTNTDPLKLQMDDENV---------MNIFSSTKPLNIKYDFSNNEIGTLGIPEF 722

Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSI--HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
            + +  G + +       +  +   +S      ++      +      +Q++     +  
Sbjct: 723 GTSFVRGMLKDTFPTKFSEMTRISGLSHGTDVWLNNAQDLVKSKTAGFDQIISTRDDIMN 782

Query: 705 YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
             ++     +++     K    K+         +        ++    +     Y F K+
Sbjct: 783 SLINLGLDKKKSFQIMEKVRKGKELSEETLNYMRENKVPDWYIDSCLKI----KYLFPKA 838

Query: 765 HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK---------IKKFCQDARQFNIQ 815
           HA AY ++SY+ A+ K +YP  F A   + ++++ +          I+    +  Q    
Sbjct: 839 HAVAYCLMSYRIAYYKVYYPKAFYATYFSTKLNDFQYSVIVKGLKSIQYALNEINQLEKP 898

Query: 816 IMPPS------------------------VNTPCVDFKV-GDNRIYYSLAAIKGVGTTTA 850
                                          +  V F +  D  I   L+A+  V    A
Sbjct: 899 TQREKNLRSLLEVAEEMAARDIKIKKADLYKSEAVKFILDEDGEILPPLSAVDDVSEAMA 958

Query: 851 RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           + ++E      F S+ED   R     LN+  L SL
Sbjct: 959 KDVVEEREKAKFISIEDLKKRTS---LNKNALNSL 990


>gi|218670743|ref|ZP_03520414.1| DNA polymerase III, alpha subunit [Rhizobium etli GR56]
          Length = 385

 Score =  164 bits (414), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 103/393 (26%), Positives = 177/393 (45%), Gaps = 21/393 (5%)

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
           D  +  +  L     AG   R  +G  AK     +Y      EL++I +  ++ YFL V 
Sbjct: 3   DPGETPQETLERLTRAGAAKRYPEGIPAKVAPQIEY------ELDLIGKKNYASYFLTVH 56

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
             IQ A+ +   +  GRGS A SV  Y L IT++DP + +LLF+RF++ DR   PD D+D
Sbjct: 57  RIIQHARYDLKVLCQGRGSAANSVICYCLEITEVDPQKSTLLFDRFISMDRDEPPDIDVD 116

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           F  DRR+EVI+++   Y  E         + + ++A R+V +A  +       +  L+  
Sbjct: 117 FEHDRREEVIQFIYKNYKREHAGLTAGVTTYRTRSAGREVAKAFGLSEDVQSAISSLVWG 176

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
                +S      D++     + DP    +L+ + +L G  RH + H  G VI    L +
Sbjct: 177 WSEDNLS----ERDAKAAGLDVKDPVTRNVLKYASELLGFPRHLTQHVGGFVITRDRLDE 232

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL--- 598
           +VP+ +    D  + +++   ++   ++K D L L  LT L+K+   L            
Sbjct: 233 VVPIMKTAMPDRYMIEWDKDDLDNVKILKVDVLALGMLTCLRKAFSLLELHYDVKKTLAD 292

Query: 599 ---SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
                   +    Y ++    TLG+FQ+ES      L  ++P    D++  V++ RPGPI
Sbjct: 293 LGNREHGDEGKPVYEMMGRADTLGVFQIESRAQMSMLPRLKPKIFYDLVIEVAIVRPGPI 352

Query: 656 DNIVVYN-----NRKNGKEKIVSIHPLIDPMLK 683
              +V+       ++     I      +  +L+
Sbjct: 353 QGDMVHPYLKRREQRARNIPIEYPSKELGAVLE 385


>gi|19548858|gb|AAL90826.1| polymerase III subunit alpha [Escherichia coli]
          Length = 302

 Score =  164 bits (414), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 138/303 (45%), Positives = 204/303 (67%), Gaps = 13/303 (4%)

Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
           LNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  
Sbjct: 1   LNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGH 60

Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
           PY  VDR+ KLIP DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  
Sbjct: 61  PYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGK 119

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+
Sbjct: 120 HAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALE 179

Query: 588 FLAQRGVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            + +R  K      D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED
Sbjct: 180 MINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFED 239

Query: 643 IIALVSLYRPGPIDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQV 695
           +IALV+L+RPGP+ + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQV
Sbjct: 240 MIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQV 299

Query: 696 MQI 698
           MQI
Sbjct: 300 MQI 302


>gi|227499278|ref|ZP_03929390.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
 gi|227218629|gb|EEI83863.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
          Length = 1358

 Score =  164 bits (414), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 125/906 (13%), Positives = 277/906 (30%), Gaps = 176/906 (19%)

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            ID+    K+ +          S  +      G + L +L+S   +        +  LS L
Sbjct: 510  IDLSSINKLKSYWPKAKHEYFSATVFAKNKIGLKNLYKLISESRMK-YFNDEAKTPLSVL 568

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFN----SSQVAEKRLLTFK----KLFGDRLYVNLQR 188
            ++   EGL++ +G     +                      ++     +F DR    + +
Sbjct: 569  EKY-REGLLLGSGSDESMLFSYLQNKRNKKDIDKIRGLFDFYQMAPLGVFNDR----VNK 623

Query: 189  HRGYD----RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
             +  D    R    +++  A       VAT    +L +++Y   +         ++ +  
Sbjct: 624  GKLRDFNQVREINEKILAFAKEDNKLAVATGAVRYLQKDEYILRN---------ILHKGQ 674

Query: 245  RPRVTPDHYLKNRSEMVSIFSDLPEALENTVE-IARRCSFILQVHAPILPRFIEKECDDI 303
              +   +  L        +  D         E +  R    +      +    +      
Sbjct: 675  FFKYHENEALYYLRTTKEMMDDFSYLSPIDAEDVVIRNPKKIVDFIEDIRPIPKGTFPPK 734

Query: 304  QKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADF 363
             +  + ELR    A                 +    RL+ ELN I    ++  ++I    
Sbjct: 735  IEGSDTELRETCFAKAHSIYGDPL------PKIVEDRLNRELNSIISNGYAVLYIIAKKL 788

Query: 364  IQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------ 399
            +  + ++   VG  RGS   S  A    IT+++PL                         
Sbjct: 789  VGKSNQDGYLVG-SRGSVGSSFAATMADITEVNPLSPHYVCPKCKHSEFFEDDLLGAGID 847

Query: 400  -----------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
                              ++ FE FL  +    PD D++F  + +  + +Y +  +G  +
Sbjct: 848  YPDKTCPECGTMMKKDGHNIPFEVFLGFEGDKEPDIDLNFAGEYQPTIHKYTEELFGEGK 907

Query: 443  VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            V +  T G++Q   A   + +  +                                    
Sbjct: 908  VFRAGTIGAIQDNTAFGYIKKYSED----------------------------------Y 933

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMYRDVRSDL---PVTQ 557
                +  ++ +I + L+ + R    H  G+++    +    + P+             T 
Sbjct: 934  QIQFTNAQVRKIQRGLKDVKRTTGQHPGGLIVVPDDIEIFDICPIQYPADDGRGDIKTTH 993

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGT 617
            F    + +  L+K D LG    ++++   D      +++               +     
Sbjct: 994  FTYNMMHET-LLKLDLLGHDVPSIIRALQDLTGTNPLEIT--------------MGDPRV 1038

Query: 618  LGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI--H 675
            + IF    +   +            I    + +  G + +       +  +   +S    
Sbjct: 1039 MKIFSSTETLDIKHDFSNNEIGTLGIPEFGTNFVRGMLKDAYPTKFSEMTRISGLSHGTD 1098

Query: 676  PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK-QKERFIS 734
              ++      +  I   ++++     +    + +    +++     K    K   E  ++
Sbjct: 1099 VWLNNAQDLVRNKIASFDEIISTRDDIMNALIQQGLDKKKSFSIMEKVRKGKSLSEETLA 1158

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
                NG+ +    +  ++      Y F K+HA AY ++SY+ A+ K +YP  F A     
Sbjct: 1159 YMRDNGVPEWYIESCLKI-----QYLFPKAHAVAYCLMSYRIAYYKVYYPEAFYATYFNT 1213

Query: 795  EMDNVEKIKKFC--------------------------------QDARQFNIQIMPPSVN 822
            ++++ +                                      ++    +I++    + 
Sbjct: 1214 KINDFKYSTIIKGLGEIQKALSEIGGDYDLTQRDKQIRTVLEVSEEMAARDIRLEKADIY 1273

Query: 823  TPCVD-FKVGDNR--IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
                  F + D +  I   L+A+  V    A  I+       F SLED  +R     +N+
Sbjct: 1274 KSDAKKFLLSDRKGYILPPLSAVDDVSEAMALDIVREREKGEFISLEDLKNRTS---VNK 1330

Query: 880  RVLESL 885
              + SL
Sbjct: 1331 NAITSL 1336



 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 41/88 (46%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L++H+  + L+G +   ++L  + A +  A+ ITDT  L +  +        GI+ + 
Sbjct: 250 IELEIHTKMTNLDGFVDNKDLLRTLKAWKMGAVGITDTETLQALPDLYDSLSKEGIRMLP 309

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
           G +L +   +   +TN      P +  I
Sbjct: 310 GAELLLVDDELRVLTNLSDEEVPPIKKI 337


>gi|41817811|gb|AAS11663.1| polymerase III subunit alpha [Escherichia coli]
 gi|41817813|gb|AAS11664.1| polymerase III subunit alpha [Escherichia coli]
 gi|41817815|gb|AAS11665.1| polymerase III subunit alpha [Escherichia coli]
 gi|41817817|gb|AAS11666.1| polymerase III subunit alpha [Escherichia coli]
 gi|41817821|gb|AAS11668.1| polymerase III subunit alpha [Escherichia coli]
 gi|41817823|gb|AAS11669.1| polymerase III subunit alpha [Shigella boydii]
 gi|41817825|gb|AAS11670.1| polymerase III subunit alpha [Shigella boydii]
 gi|41817829|gb|AAS11672.1| polymerase III subunit alpha [Shigella dysenteriae]
 gi|41817831|gb|AAS11673.1| polymerase III subunit alpha [Shigella boydii]
 gi|41817833|gb|AAS11674.1| polymerase III subunit alpha [Shigella sonnei]
          Length = 300

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 136/301 (45%), Positives = 202/301 (67%), Gaps = 13/301 (4%)

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
           P+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY
Sbjct: 1   PERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPY 60

Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
             VDR+ KLIP DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA
Sbjct: 61  GFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHA 119

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +
Sbjct: 120 GGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMI 179

Query: 590 AQRGVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            +R  K      D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+I
Sbjct: 180 NKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMI 239

Query: 645 ALVSLYRPGPIDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQ 697
           ALV+L+RPGP+ + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQ
Sbjct: 240 ALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQ 299

Query: 698 I 698
           I
Sbjct: 300 I 300


>gi|41817819|gb|AAS11667.1| polymerase III subunit alpha [Escherichia coli]
          Length = 300

 Score =  163 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 136/301 (45%), Positives = 202/301 (67%), Gaps = 13/301 (4%)

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
           P+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY
Sbjct: 1   PERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPY 60

Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
             VDR+ KLIP DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA
Sbjct: 61  GFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHA 119

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +
Sbjct: 120 GGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMI 179

Query: 590 AQRGVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            +R  K      D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+I
Sbjct: 180 NKRRAKNDEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMI 239

Query: 645 ALVSLYRPGPIDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQ 697
           ALV+L+RPGP+ + +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQ
Sbjct: 240 ALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQ 299

Query: 698 I 698
           I
Sbjct: 300 I 300


>gi|57867461|ref|YP_189103.1| DNA polymerase III, alpha subunit, truncation [Staphylococcus
           epidermidis RP62A]
 gi|57638119|gb|AAW54907.1| DNA polymerase III, alpha subunit, truncation [Staphylococcus
           epidermidis RP62A]
          Length = 482

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/472 (15%), Positives = 136/472 (28%), Gaps = 67/472 (14%)

Query: 14  LQVHSSYS---LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC---AAGI 67
           L  H+ +S   +++   S   +L   +      +AIT+  +L SA++  Q+        I
Sbjct: 8   LHNHTMFSNFRIIDAITSPKELLTTASKLGYNGLAITEHESLSSAVQMIQELKSLKEQNI 67

Query: 68  -----QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
                + ++G ++ +         N         P  +L+    +G++ L +L S  +  
Sbjct: 68  VDESFKLVLGNEIYLVDSLEEVRDNYVGGGVTKFPHFILMAKNRKGFEALSKLSSEAWKN 127

Query: 123 DQGKQ---SVRICLSWLQ-----EIGTEGLIMLTGGSSGPIDRAFFF------------- 161
                          +L+     E     ++  T      ++                  
Sbjct: 128 SFFTGLMERTPTTKDFLRSVATSEEYKGTIMATTACIGSSVNIQLQKMKAAEENGSSSEE 187

Query: 162 --NSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNS 217
             N    A K L    + FG D  YV LQ      +      +V LA    L  +  N++
Sbjct: 188 IANCYNAARKELHWCIETFGKDDFYVELQPAESEVQIYCNKHLVNLANETGLKCIVANDT 247

Query: 218 LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM----------------- 260
            +   ED + H V +          +           + + +M                 
Sbjct: 248 HYARPEDRDVHRVFLNSKEGDREVDEFYYYCYMHSIDEMKKQMSYLSEEIIEEAIKNTEK 307

Query: 261 ---VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
                   D+                              K   +  K ++  L      
Sbjct: 308 IYDKVEVYDINHTSIIPKSTIPEFELSHIFSKAYDTYEHIKYLANSDKVDDQYLLYLIEK 367

Query: 318 GLEVRLAQGAIAKGY-------HAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           G    L    I +            +  + +     +   M            I W    
Sbjct: 368 GYFKELHYKGIGRKEFHQILKRIDDELSEIIGISHKLNQTMSSYYLTCREIVNIMWKDDE 427

Query: 371 N---IPVGPGRGSGAGSVTAYALTITDIDPLRFSL-LFERFLNPDRMSMPDF 418
                 VG GRGSGAG +  Y L IT I+PL+++     R L  +R  +P  
Sbjct: 428 CGGNSLVGSGRGSGAGFLLNYLLGITQINPLKYNNLPHWRHLTKERPELPKM 479


>gi|289759528|ref|ZP_06518906.1| DNA polymerase subunit III (alpha) dnaE2 [Mycobacterium
           tuberculosis T85]
 gi|289715092|gb|EFD79104.1| DNA polymerase subunit III (alpha) dnaE2 [Mycobacterium
           tuberculosis T85]
          Length = 325

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 101/333 (30%), Positives = 157/333 (47%), Gaps = 13/333 (3%)

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF-GDRLYVNL 186
             R     L E       +LTG   G + +A        A++ L      F   R+ + L
Sbjct: 1   KPRYDFDALTEAAGGHWHILTGCRKGHVRQALSQGGPAAAQRALADLVDRFTPSRVSIEL 60

Query: 187 QRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
             H    D  R + +  LA    + +VAT  + F           + A+     +     
Sbjct: 61  THHGHPLDDERNAALAGLAPRFGVGIVATTGAHFADPSRGRLAMAMAAIRARRSLDSAAG 120

Query: 246 PRVT-PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
                   +L++  EM  +F+  PEA+    E+  RC+F LQ+ AP LP F   +     
Sbjct: 121 WLAPLGGAHLRSGEEMARLFAWCPEAVTAAAELGERCAFGLQLIAPRLPPFDVPDG---- 176

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             E++ LR+  +AG   R      A   ++Q     ++ EL VIA+++F GYFL+V D  
Sbjct: 177 HTEDSWLRSLVMAGARERYGPPKSAPRAYSQ-----IEHELKVIAQLRFPGYFLVVHDIT 231

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQ 424
           ++ + N+I    GRGS A S   YAL +T +DP+   LLFERFL+P R   PD DID   
Sbjct: 232 RFCRDNDIL-CQGRGSAANSAVCYALGVTAVDPVANELLFERFLSPARDGPPDIDIDIES 290

Query: 425 DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
           D+R++VI+YV +KYG +  AQ+    + + ++A
Sbjct: 291 DQREKVIQYVYHKYGRDYAAQVANVITYRGRSA 323


>gi|323342031|ref|ZP_08082264.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464456|gb|EFY09649.1| DNA polymerase III PolC [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 1433

 Score =  162 bits (409), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 132/932 (14%), Positives = 279/932 (29%), Gaps = 194/932 (20%)

Query: 78   DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-----------DQGK 126
             + D   + N+            ++  T    + L +L++  +             D   
Sbjct: 557  TIDDLQSLNNESSFKKLRKSHCTVIAKTQSSIKDLYQLITLSHTKYLAFFGKTSKGDAVM 616

Query: 127  QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY- 183
               RI    L+    E L++  G ++  +       S +  E+ +  +   ++    LY 
Sbjct: 617  AEPRILRRELERF-RENLLIGAGCTNSELFEIAMNKSQEALERCVAFYDYVEIMPLDLYA 675

Query: 184  --VNLQRHRGYDR--YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV----- 234
              +  Q      R     ++++  A     P++A  N  +    +    DV +       
Sbjct: 676  PLLESQAIESESRLLDIINRIIATATKLNKPILAVGNVHYNHPSEKVIRDVYIHSQGIGG 735

Query: 235  -AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILP 293
              H   +  + R           RS    + +      +   E   +    L      + 
Sbjct: 736  SRHPLYIFNEQRRMAFEAPNQHFRSTNEMLDAFAFLGADKAYEYVVKNPVKLLNEIEDIS 795

Query: 294  RFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
               ++      +  +  L++                     +  + R++ EL  I    +
Sbjct: 796  PKKKELFTPHLENSDELLKDIVYHNAHKLYGNPL------PELVQARIERELKSIFGNGY 849

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------- 399
               + I    ++ +  +   VG  RGS   S+ A    IT+++PL               
Sbjct: 850  GVIYYISHLLVKKSLDDGYLVG-SRGSVGSSLVATMAEITEVNPLAPHYVCDNCHYNEFF 908

Query: 400  ---------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                                         + FE FL  +   +PD D++F  D ++    
Sbjct: 909  LNGEYSSGFDLDPKDCPNCGKALHCEGQDIPFETFLGFEGDKVPDIDLNFSGDYQEFAHA 968

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
            Y +  +G E V +  T  ++  K A   V       Y +   +                 
Sbjct: 969  YTKEIFGEEYVYRAGTISTVAQKTAFGYVL-----GYHESMNITNSNNAWN--------- 1014

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVR 550
                                 ++   EG+ R    H  GI  V     +    P+     
Sbjct: 1015 -------------------TYLAIGAEGVKRTTGQHPGGIIVVPDYMDVHDFTPIQYPAN 1055

Query: 551  SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
            +      +     E   +   + L L  L  +  +   + +R   VD+  +P +D +T  
Sbjct: 1056 NPDST--WYTTHFEFHDID-DNVLKLDILGHVDPTAMKMLERLTGVDIHDVPMNDKKTLS 1112

Query: 611  LLTTKGTLGI--------------FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
            L  +   L +               +  +  +R  LE  +P+   D++ +  L       
Sbjct: 1113 LFGSTEALDVDERKYHEVTGGLGLPEFGTPFVRGMLEATRPNKFSDLVRISGLSH----- 1167

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
               V+ N              +         VI  ++ +  +  +  G    EA  +  +
Sbjct: 1168 GTDVWRNNA----------EELIKQGLAFDKVIGCRDDI-MVDLMHYGLEAKEAFTIMES 1216

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            + K      +     +I+   +N + +    +  ++      Y F K+HA AY +++ + 
Sbjct: 1217 VRKGRGLTDE-----WIASMKRNNVPEWYIDSCLKI-----KYMFPKAHAVAYVMMAIRV 1266

Query: 777  AWMKTHYPVEFLAASMTLEMDNVEKIKKFCQ----------------------------- 807
            AW K +Y   + A   TL ++  E                                    
Sbjct: 1267 AWFKVYYARAYYAVYFTLRVNAYEIETMCASQEIVASRLNSINMRLKSFDTKKDVTIKEK 1326

Query: 808  ----------DARQFNIQIMPPSVNTPCV-DFKVG---DNRIYYSLAAIKGVGTTTARHI 853
                      + +    ++ P  +      +F +    D  I      + G+G   AR +
Sbjct: 1327 NLIDTLEVTLELQSRGYKVSPLDLELSKATEFSLDPRDDKAILPPFNVVDGLGDNVARQL 1386

Query: 854  MEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            ++A  ++PF S +D  +R      + + L+ L
Sbjct: 1387 VKAREEQPFISKKDLMTRGGISSTSVKKLDEL 1418



 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/93 (11%), Positives = 30/93 (32%), Gaps = 7/93 (7%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA------- 64
           V   +H+ +S ++G    +  + +      P + ITD   +    +              
Sbjct: 292 VEFHLHTKFSEMDGINDASEYMAQAFEWGHPGMIITDHTGVQGFPKAYGNLKKLRSKYPN 351

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
              +   G ++++   +   ++N       T  
Sbjct: 352 HEFKLGYGVEMNMVDGELKIVSNAHGESLQTGS 384


>gi|41817827|gb|AAS11671.1| polymerase III subunit alpha [Shigella flexneri]
          Length = 300

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 134/301 (44%), Positives = 199/301 (66%), Gaps = 13/301 (4%)

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
           P+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR    PY
Sbjct: 1   PERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVRGHPY 60

Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
             VDR+ KLIP DP   +  +A   + +  E   AD  V  L+ +++KLEG+ R+A  HA
Sbjct: 61  GFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALINMARKLEGVTRNAGKHA 119

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +
Sbjct: 120 GGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMI 179

Query: 590 AQRGVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            +R  K      D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+I
Sbjct: 180 NKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMI 239

Query: 645 ALVSLYRPGPIDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQ 697
           ALV+L+RPGP+ + +V  + +RK+G+E+I        H  +  +L+ T G+I+YQEQVMQ
Sbjct: 240 ALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKSVLEPTYGIILYQEQVMQ 299

Query: 698 I 698
           I
Sbjct: 300 I 300


>gi|26554369|ref|NP_758303.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
 gi|26454379|dbj|BAC44707.1| DNA polymerase III subunit alpha [Mycoplasma penetrans HF-2]
          Length = 1458

 Score =  161 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 136/907 (14%), Positives = 293/907 (32%), Gaps = 161/907 (17%)

Query: 79   MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
             + N  + N           I +        + L +L+S   L        ++      E
Sbjct: 596  NEINSNLQNDFLRERNRGSLITVYCKNEGEIRNLYKLISTS-LTSNFDGGPKVYWENFNE 654

Query: 139  IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL-TFK-------KLFGDRLYVNLQRHR 190
                  I+    + G I  A   N+ QV E  +   +        + F   ++  + +  
Sbjct: 655  FNNS-FIVSNSATEGEIFEAAMSNTQQVLEDIIKDKYDFITIGSPECFLHDIHREIYKRG 713

Query: 191  GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVL-----MAVAHSTVVSQKDR 245
              +     +++++A  +   +VAT+++ +L+E D     V      +    + +    + 
Sbjct: 714  WIEDAI-KRIIKIANKYNKKVVATSDTYYLNESDEVYFRVYVNAKVLGGKRNRLFKYNEL 772

Query: 246  PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
              V P +Y +   E+   FS L + +     +    ++I  +    +    E       +
Sbjct: 773  NTVLPKYYFRTTDELKDEFSFLNDPVLVNDIVVTNSNYIASLIDANIKPIKETLHSPHIE 832

Query: 306  EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
               ++L+                       D + R+D E++ +    ++  +      ++
Sbjct: 833  GASDKLKQLIYQKSYSIFGD------AMNNDVKARIDREISSVIDNGYAMIYWFSHLLVK 886

Query: 366  WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------------------- 399
             +  +   VG  RGS   SV A+ + IT+++PL                           
Sbjct: 887  QSVDDGYVVG-SRGSVGSSVAAWLVDITEVNPLEPHYICTNCKYFNFEKNVDSGFDLPES 945

Query: 400  -------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
                          ++ FE F+      +PD D++F    + +   +++N +G ERV + 
Sbjct: 946  NCPKCKSKLKGDGHNIPFETFMGFKGDKIPDIDLNFSAVYQGKAHDFIKNMFGEERVFRA 1005

Query: 447  ITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADP 506
             T  +   K A   V    +       R  +                             
Sbjct: 1006 GTISTTAEKTAYGYVKSYFEESKKMNARNAE----------------------------- 1036

Query: 507  SVDRLLEISQKLEGLYRHASTHAAGIVIGDR--PLSQLVPMYRDVRSDLPVTQFNMKWIE 564
                +  I++K E + R    H  GIV+      +    P             +    + 
Sbjct: 1037 ----ITRIAKKCENVKRTTGQHPGGIVVVPHGKDVYDFTPFNYPADDK--TQDWFTTHLA 1090

Query: 565  ----KAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI 620
                   L+KFD LG    T+L+     +      V+   IP  D++   L  +  +L I
Sbjct: 1091 FESLHDSLLKFDILGHDNPTILK-----MLTEQTNVNADTIPNFDNDVMDLFNSTDSLKI 1145

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL--I 678
                 + + +      P+   + +  + L       + ++  +  +    + + +    I
Sbjct: 1146 KNPMINKILKTGSSGIPEFGTNFVKEMLLVTKPQKFSDLIRISGLSHGTNVWNDNAKYLI 1205

Query: 679  DPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASK 738
            +        VI  ++ +M       G +   A  +   + K      + QK         
Sbjct: 1206 EEKGLTISDVISCRDDIMVYLID-KGITPIIAFKIMEDVRKGKGLNEEYQKV-------- 1256

Query: 739  NGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDN 798
              ++       +        Y F K+HA AY +++++ AW K +YP+ F A+  ++ +  
Sbjct: 1257 --LNDNNIPTWYIESCNKISYLFPKAHATAYVIMAWKIAWFKIYYPLHFYASYFSIRIKV 1314

Query: 799  VEKIKKFCQD--------------------------------ARQFNIQIMPPSVNTPCV 826
             +       +                                  +  ++++        +
Sbjct: 1315 FDIKSILNGESEITNKINEIKEKMANPKTKALVKNKELDLIPIYELALELLGRGYKFANI 1374

Query: 827  D--------FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
            D        F V  + +    +AI G+G + A  I++A  +K F S EDF  R      +
Sbjct: 1375 DLKKSLATDFLVEGDYLIPPFSAIDGLGDSVATSIVKAREEKMFSSKEDFKKRTKVTTTH 1434

Query: 879  RRVLESL 885
             +++E L
Sbjct: 1435 MKIMEEL 1441



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 1/91 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-GIQPI 70
             L  H++ +  EG +++  +    +     ++AITD  N  +  +F  +A     ++ I
Sbjct: 334 TELVNHTNMTAFEGLVNIKELFKFSSEMGYSSVAITDKFNCQNFPDFYNEAKKYSKLKAI 393

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
            G Q +I  ++   + N   T       ++ 
Sbjct: 394 YGVQFNIIDKNIPIVLNANDTKISDATYVIF 424


>gi|256544693|ref|ZP_05472065.1| Gram-positive family DNA polymerase III, alpha subunit [Anaerococcus
            vaginalis ATCC 51170]
 gi|256399582|gb|EEU13187.1| Gram-positive family DNA polymerase III, alpha subunit [Anaerococcus
            vaginalis ATCC 51170]
          Length = 1398

 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 122/875 (13%), Positives = 266/875 (30%), Gaps = 161/875 (18%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++      G + L +++S   +        +     ++E   EGLI+ +GG  G + +A 
Sbjct: 576  IIFAKNYHGLKNLYKIISESRMK-YFNLEAKTPFDLVKE-NKEGLIIGSGGKDGLLFKAI 633

Query: 160  FFN-SSQVAEKRLLTFK-------KLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPL 211
                + +  EK    F         +F D L     R +        ++++L   +   +
Sbjct: 634  RDGYAEEKIEKICGFFDFFQIEAMGVFADDLENGAIRDKNQIIEINKKIIELGKKYNKLV 693

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            VAT +  ++ ++DY   ++L           K +     ++      +  +   D    L
Sbjct: 694  VATGSVRYMEKKDYVLRNIL----------HKGQFFHYKENNPLYYLKTTNEMLDEFYYL 743

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKE--CDDIQKEEENELRNKAVAGLEVRLAQGAIA 329
            ++  ++       +++   +               +  + +L++             +I 
Sbjct: 744  DDQTKMEVVIDNTIKIADSLERIMPIPHETFPPKIEGSDKKLKDTTYE------KAISIY 797

Query: 330  KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYA 389
                    + RLD EL+ I    ++  ++I  + ++ + ++   VG  RGS   S  A  
Sbjct: 798  GDPLPDLVKTRLDKELDSIISNGYAVLYIIAKELVEKSNEDGYLVG-SRGSVGSSFAATM 856

Query: 390  LTITDIDPLR-----------------------------------------FSLLFERFL 408
              IT+++PL                                            + FE FL
Sbjct: 857  ANITEVNPLAPHYVCPSCKHSEFITDGSVGAGIDLPDKTCPKCGADMNKDGHDIPFEVFL 916

Query: 409  NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
              +    PD D++F  + +  + +Y +  +G  +V +  T G+++   A   + + ++  
Sbjct: 917  GFEGDKEPDIDLNFAGEYQPTIHKYTEELFGEGKVFRAGTIGTIKDNTAFGYIKKYMEDN 976

Query: 469  YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
                                                + S  ++ +  + L  + R    H
Sbjct: 977  ----------------------------------DLNLSNAQIRKYQRGLFDVKRTTGQH 1002

Query: 529  AAGIVIGDRP--LSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
              G++I      +    P+                      +     L L  L     ++
Sbjct: 1003 PGGLMIVPNDKNIYDFSPVQYPADDGKD--DIKTTHFTYNMMHGV-ILKLDLLGHDVPTI 1059

Query: 587  DFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIAL 646
                Q     D   +  DD            + IF        +            I   
Sbjct: 1060 IRSLQDLTNTDPLKLQMDDENV---------MNIFSSTKPLNIKYDFSNNEIGTLGIPEF 1110

Query: 647  VSLYRPGPIDNIVVYNNRKNGKEKIVSI--HPLIDPMLKETQGVIIYQEQVMQIAQLLSG 704
             + +  G + +       +  +   +S      ++      +      +Q++     +  
Sbjct: 1111 GTSFVRGMLKDTFPTKFSEMTRISGLSHGTDVWLNNAQDLVKSKTAGFDQIISTRDDIMN 1170

Query: 705  YSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKS 764
              ++     +++     K    K          K        ++    +     Y F K+
Sbjct: 1171 SLINLGLDKKKSFQIMEKVRKGKTLSEETLAYMKENNVPDWYIDSCLKI----KYLFPKA 1226

Query: 765  HAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK---------IKKFCQDARQFNIQ 815
            HA AY ++SY+ A+ K +YP  F A   + ++++ +          I+    +  Q    
Sbjct: 1227 HAVAYCLMSYRIAYYKVYYPKAFYATYFSTKLNDFQYSVIVNGLKSIQYALNEINQLEKP 1286

Query: 816  IMPPS------------------------VNTPCVDFKVGD-NRIYYSLAAIKGVGTTTA 850
                                           +  V F + D   I   L+A+  V    A
Sbjct: 1287 TQREKNLRSLLEVAEEMAARDIKIKKADLYKSEAVKFILDDDGEILPPLSAVDDVSEAMA 1346

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            + I+       F S+ED   R     LN+  L SL
Sbjct: 1347 KDIVIEREKAKFISIEDLKKRTS---LNKNALNSL 1378



 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L++H+  + L+G + ++ +  K+ A    +  ITDT  L +  +   K     I+ + 
Sbjct: 292 VELEIHTKMTNLDGFVDMDELAKKLKAWGHSSCGITDTETLQALPDMYDKLGKNDIKMLA 351

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
           G +L +  ++   +TN        +  +        
Sbjct: 352 GAELLLVDKNLRILTNNYNKKINDISDL----KNQR 383


>gi|47458892|ref|YP_015754.1| DNA polymerase III PolC [Mycoplasma mobile 163K]
 gi|47458220|gb|AAT27543.1| DNA polymerase III alpha subunit [Mycoplasma mobile 163K]
          Length = 1433

 Score =  158 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 138/928 (14%), Positives = 280/928 (30%), Gaps = 193/928 (20%)

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVP-SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
              +++   D++           T P  I +L     G + L + +S            ++
Sbjct: 566  SDMNVKYFDDIYNFKSNIIYEKTRPFEITILAKNQSGLKELFQKISLTSTKQYFNG-PKM 624

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR--- 188
                L E  ++ +++ +G     I    F  + +   + L  F        YV +     
Sbjct: 625  FFEDLLEK-SKNILIGSGTLKSLIINEVFRGTRKGLREYLKYFD-------YVEIIPPKN 676

Query: 189  --HRGYDRYRESQ--------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHS 237
              H   +     +        +V+ +      +VA  +  ++ +++   H++ + A    
Sbjct: 677  FSHWIKNEDILKEELLEGLKILVEESKKLNKIVVAVGDVRYVQKDEKILHEIYINAKGLQ 736

Query: 238  TVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIE 297
             +     +   +   Y            D    L++   I         + +  +   IE
Sbjct: 737  GIRHPLFKYDQSETDYPTLNYLNTQEMIDQFLFLQDNDLIKEIVVKNTHLISNQIENNIE 796

Query: 298  ----KECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKF 353
                       +   N LR    A       +         +    R++ ELN I    +
Sbjct: 797  VIKKDLFTPKIENSANLLRELVYAKAFEIYGKNL------PELIISRIEKELNPIIEQGY 850

Query: 354  SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------------- 399
               + I    +  + ++   VG  RGS   S+ AY   IT+++PL               
Sbjct: 851  DVIYWISHKIVAKSLEDGYIVG-SRGSVGSSLVAYLSGITEVNPLPPHYICSNCKDCEFI 909

Query: 400  ---------------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                                        ++ FE FL      +PD D++F  + +  V  
Sbjct: 910  KNLDITSGYDLPHKNCNNCYKALKREGQTIPFETFLGFGANKVPDIDLNFSNEYQHIVHD 969

Query: 433  YVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAI 492
             V+  +G +   +  T      K A   V                    +     S   I
Sbjct: 970  EVRKWFGEDHCFRAGTISKTADKTAYGYVL---------------AWAEENNLTFSNAFI 1014

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMY---R 547
                                 ++ K+ G  R    H  GI++  +  S     P+     
Sbjct: 1015 G-------------------YLASKIVGTKRTTGQHPGGIIVIPKDFSVEDFTPINFPAN 1055

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
            D  S    T F+   I    ++K D LG    T ++            +  +        
Sbjct: 1056 DPNSSWKTTHFDFHAIHD-NVLKLDLLGHNDPTAIKFLTSLTNVNVFDIPFNDEKVLSLF 1114

Query: 608  TYHLLTTKGTLGI----------FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            T           I           +  ++ +R+ L   +     D+I++  L        
Sbjct: 1115 TSTKALNIKPEDISGEHTGALGFPEFGTTFVRKMLVSAKAKSFSDLISVSGLSHG----- 1169

Query: 658  IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
                    N ++ I+  +  +  ++     ++++         +  G +  +A  +   +
Sbjct: 1170 --TDVWNNNAEDLILKKNLQLKDIISCRDDIMVFL--------ITKGVNELKAFQIMENV 1219

Query: 718  GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTA 777
             K      ++++           +      + +        Y F K+HAAAY +++++ A
Sbjct: 1220 RKGKGLNSEEEQL----------LKAHKVSDWYIDSLNKIKYMFPKAHAAAYVMMAWRIA 1269

Query: 778  WMKTHYPVEFLAASMTLEMDNVE------------------------------------- 800
            W K +YP+EF A+  T   D ++                                     
Sbjct: 1270 WFKLYYPLEFYASYFTTRADFIDIKIMSSTKKTISEKLSDFKRRRNSKGEDKLSAKEQGL 1329

Query: 801  -KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD---NRIYYSLAAIKGVGTTTARHIMEA 856
              + +  ++      +I   S+N       + D   N +     A+ G+G   A  I+E 
Sbjct: 1330 ITVLEIAEEMYARGFKISKISINKSEATNWIIDKESNSLIPPFNAMDGLGVAVAESIIEQ 1389

Query: 857  SADKPFDSLEDFCSRVDS-KKLNRRVLE 883
               KPF S+ED   R    K LN + +E
Sbjct: 1390 RKKKPFISIEDVIERTSVNKTLNEKFIE 1417



 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 36/91 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           + L + ++ S ++G    ++ +         ++AI D +++ S   F      A I+ I 
Sbjct: 313 IELSIRTTMSTMDGFKEADDFVSFAKQLNHESLAIVDIDSVQSFPNFFNAVKKANIKGIY 372

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           G       ++N  + N  K       + V+ 
Sbjct: 373 GASFSTIFKNNQAIKNLKKNTLIKNETYVVF 403


>gi|295091739|emb|CBK77846.1| DNA polymerase III, alpha chain, Gram-positive type [Clostridium cf.
            saccharolyticum K10]
          Length = 1037

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 113/765 (14%), Positives = 212/765 (27%), Gaps = 145/765 (18%)

Query: 53   FSA-----LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
              A     ++F +   + GI+       ++D  +     +           I++L     
Sbjct: 345  AGATAEIFVKFVEMLKSRGIE-------NLDELNEQSRMSVETIRKMPTNHIIILAKNDV 397

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            G   L  LVS   L+    +  RI  S + +   EGLI+ +   +G + +A      +  
Sbjct: 398  GRINLYRLVSDSNLV-YYAKRPRIPKSQILKY-REGLIIGSACEAGELYQALLRGVPEAE 455

Query: 168  EKRLLTFKKLFGDRLYVNLQRHRGY-----DRY-----------RESQVVQLAYTHELPL 211
              ++++F        Y+ +Q          D                ++V+L      P+
Sbjct: 456  INKIVSFYD------YLEIQPLGNNAFMLRDEKSTVKTEEDLKDLNRKIVELGERFNKPV 509

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
             AT +  FL  ED E +  ++             P          R           E +
Sbjct: 510  CATCDVHFLDPED-EVYRRIIMAGKGFKDCDDQAPLYLRTTEEMLREFEYLGSDKAEEVV 568

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
                         +             +C  +    +  LRN           +      
Sbjct: 569  ITNTRKIAAMCERI-------SPVRPDKCPPVIPNSDEMLRNICYNRAHEMYGEDL---- 617

Query: 332  YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
               +   +RL+ ELN I    F+  ++I    +  + ++   VG  RGS   S  A    
Sbjct: 618  --PKIVVERLERELNSIISNGFAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFVATMSG 674

Query: 392  ITDIDPLR---------------------------------------------FSLLFER 406
            IT+++PL                                              F + FE 
Sbjct: 675  ITEVNPLSPHYYCTNCHFYDFDSEEVKKFSGMAGCDMPDRLCPVCGKPLKKDGFDIPFET 734

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL       PD D++F  + +     Y +  +G  +  +  T G+L  K A   V +  +
Sbjct: 735  FLGFKGDKEPDIDLNFSGEYQSRAHDYTEVIFGKGQTFRAGTIGTLADKTAFGYVKKYYE 794

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
                                               R        +  I     G+ R   
Sbjct: 795  ----------------------------------ERGQRKRACEINRIVTGCVGVRRTTG 820

Query: 527  THAAGIV--IGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
             H  GI+       +    P+           +T           L+K D LG    T++
Sbjct: 821  QHPGGIIVLPHGEEIYSFTPVQHPADDMTSKTITTHFDYHSIDHNLLKLDILGHDDPTMI 880

Query: 583  QKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIED 642
            +   D      V+        D  E   L  +   LGI   +  G         P+   D
Sbjct: 881  RMLQDLTGLDPVRDIP----LDCKEVMSLFQSTEALGITP-DDIGGCPLGALGVPEFGTD 935

Query: 643  IIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH-PLIDPMLKETQGVIIYQEQVMQIAQL 701
                + L       + +V          +   +   +    K T    I     + +  +
Sbjct: 936  FAMQMLLDTKPKYFSDLVRIAGLAHGTDVWLGNAQTLIQEGKATIQTAICTRDDIMVYLI 995

Query: 702  LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
              G     +  +  ++ K    + +     +    + +G+     
Sbjct: 996  SRGLEEGLSFTIMESVRKGKGLKPE-----WEEEMTAHGVPDWYI 1035



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 1/87 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-SQKACAAGIQPI 70
           V L  H+  S ++G   + +I+ +       AIA+TD   + +  +         G + +
Sbjct: 111 VELHCHTKMSDMDGVSEVKDIIKRAKKWGMDAIAVTDHGCVQAFPDANHAVEKGDGFKVL 170

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVP 97
            G +  +         +          
Sbjct: 171 YGVEGYLVDDLKQLAEDSRGQSLDHTC 197


>gi|254838526|gb|ACT83411.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|254838528|gb|ACT83412.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|254838530|gb|ACT83413.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|254838532|gb|ACT83414.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|254838534|gb|ACT83415.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|254838536|gb|ACT83416.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 252

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 98/258 (37%), Positives = 147/258 (56%), Gaps = 11/258 (4%)

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             +WL E   EGLI+L+GG SG + RA    + Q  E+ +  ++  F D  Y+ L R   
Sbjct: 1   DKAWLVE-HAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGR 59

Query: 192 YDRY-RESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR-VT 249
            D        + +A  ++LP+VATN  +F++EE +EAH++ +A+     +    RP+  +
Sbjct: 60  ADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYS 119

Query: 250 PDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEEN 309
           P  YL++ +EM  +F+D+PEAL N+VEIA+RC+  +++       +            E+
Sbjct: 120 PKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGE-----YFLPNFPTGGMAIED 174

Query: 310 ELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            L  K+  GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW
Sbjct: 175 FLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQW 234

Query: 367 AKKNNIPVGPGRGSGAGS 384
           +K N+IPVGPGRGSGAGS
Sbjct: 235 SKDNDIPVGPGRGSGAGS 252


>gi|193216948|ref|YP_002000190.1| DNA polymerase III PolC [Mycoplasma arthritidis 158L3-1]
 gi|193002271|gb|ACF07486.1| DNA polymerase III subunit alpha [Mycoplasma arthritidis 158L3-1]
          Length = 1438

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 138/952 (14%), Positives = 297/952 (31%), Gaps = 202/952 (21%)

Query: 60   QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEGYQRLIELVSR 118
            + A    I+            + L   N  K      P  V ++    +G ++L +++S+
Sbjct: 569  KLAREKNIR----------TANELAAVNDDKLFAKKFPREVRVIAKNQKGLKKLFKIISK 618

Query: 119  MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL- 177
              L D      R+ +   +    E L++ T  ++G +       + +   K L  +  + 
Sbjct: 619  S-LTDDYHGGPRLFID--KWEHDEDLLLGTSTNAGWVWEEAMTGTDENILKALAPYDYIE 675

Query: 178  FG-----------DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
            F            D + +         ++    +++ A       +A +++ ++ +    
Sbjct: 676  FPPISTFNYIYKDDSITLE------QVQFAYKDLLEKAKKLGKLCIAVSDARYIYDYQSL 729

Query: 227  AHDVLMAV---AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSF 283
             + + +            +K R   TPD       +M   F  L +       +      
Sbjct: 730  IYRIYVNAPTLGGGQHWLKKYREIATPDFKYLTTRQMKDEFKFLNDGTLINEIVVDNTHK 789

Query: 284  ILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDF 343
            + +   P +    +K       +  N+L+       + R            +    R++ 
Sbjct: 790  LAEQITPKIEVIKDKLYFPTFDDSANKLKEVVYQTAKERYGNNID------EKILSRIEK 843

Query: 344  ELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---- 399
            EL  I +  +S  + I    ++ + ++   VG  RGS   S+ A    IT+++PL+    
Sbjct: 844  ELGPITKYGYSVIYWISHKLVKRSNQDGYLVG-SRGSVGSSIVANLAGITEVNPLKPHYL 902

Query: 400  -------------------------------------FSLLFERFLNPDRMSMPDFDIDF 422
                                                   + FE FL  +   +PD D++F
Sbjct: 903  CEKCKHFEWSEDPHIFSGWDLPDKKCPKCATIMLKDGHDIPFETFLGFEANKVPDIDLNF 962

Query: 423  CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
              + +  +  YV+  +G     +  T  ++ +K A                         
Sbjct: 963  SGEYQVTIHNYVKELFGEAHTFRAGTIATIASKTAYG----------------------- 999

Query: 483  PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS-- 540
                        D           +   L  ++ K EG+ R    H  GI+I  +     
Sbjct: 1000 -------FCRKYDEEIHSLHEEPWTRTFLDFLASKTEGVKRTTGQHPGGIIIIPKEFDVE 1052

Query: 541  QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSL 600
               P+          + +     +   +   + L L  L     ++  + +   K D   
Sbjct: 1053 DFTPVNYPAND--ITSAWKTTHFDFTSIH-DNVLKLDLLGHDDPTVIRMLEDLTKTDAKK 1109

Query: 601  IPFDDHETYHLLTTKGT---------------LGIFQLESSGMRQALEGMQPDCIEDIIA 645
            IP  D +   L ++                   G+ +  ++ +R+ L+  +P    D+I 
Sbjct: 1110 IPKFDEKVMSLFSSTEAIKINPSEISNETTGAYGLPEFGTTFVRRMLKTAKPKSFNDLIL 1169

Query: 646  LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
            +  L          V++               +    K+ Q  +  ++ +M+        
Sbjct: 1170 MSGLSH-----GTDVWSGNA----------EELIKQGKKLQDCVCCRDDIMRDLINW-NI 1213

Query: 706  SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
               EA  +   + K       ++            +        +    K   Y F K+H
Sbjct: 1214 DHLEAFEIMEKVRKGKGLSEYQESL----------LQSKNVPIWYIESLKKIKYMFPKAH 1263

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------------------- 800
            A AY +++++ AW K +YP++F A+  +   D ++                         
Sbjct: 1264 ATAYVIMAWRIAWYKFYYPLQFYASFYSTRPDAIDIKVMSDGKDAVDNKLLELKKRSDSK 1323

Query: 801  ------------KIKKFCQDARQFNIQIMPPSVNTPC---VDFKVGDNRIYYSLAAIKGV 845
                         I +  Q+      +I    ++          + +  +      ++G+
Sbjct: 1324 KEPLSTKETNLIPILEITQELYARGFKITNVHISKSKAARWIVDIENKALIPPFVVVEGL 1383

Query: 846  GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            G T A  I++A  +  F S+EDF  R    K+N ++   L   G LD    +
Sbjct: 1384 GETVADSIIQARNEHEFLSVEDFEKRT---KVNSKIASQLKLLGILDELDET 1432



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 2/92 (2%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-AGIQPI 70
           +   + S+ S  +G  S +  L         AIAITD +++ S  EF         + PI
Sbjct: 317 IEFALRSNMSTQDGISSPSAYLKAAKHFGHRAIAITDLDDVQSFPEFYNATKKDKSVVPI 376

Query: 71  IGCQL-DIDMQDNLKMTNQGKTPFPTVPSIVL 101
            G  +  I   +             +   +V 
Sbjct: 377 YGATISSISSDNGFFYGTPADFDLSSQTYVVF 408


>gi|289450465|ref|YP_003475243.1| DNA polymerase III subunit alpha, Gram-positive type [Clostridiales
            genomosp. BVAB3 str. UPII9-5]
 gi|289185012|gb|ADC91437.1| DNA polymerase III, alpha subunit, Gram-positive type [Clostridiales
            genomosp. BVAB3 str. UPII9-5]
          Length = 1495

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 143/953 (15%), Positives = 278/953 (29%), Gaps = 198/953 (20%)

Query: 58   FSQKACAAGIQPIIGCQLDIDM---QDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            F++          I  +L +     +  L    +          I+ LV    G   L  
Sbjct: 611  FARACQ-------IDSELTLTSLNQRSGLLRPEEITDKEHKPNHIIFLVRNLLGLYNLYR 663

Query: 115  LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA-------------FFF 161
            LVS  +      +  RI    L      G+I+     +G + R                 
Sbjct: 664  LVSISHTQ-YFHKRPRIPKHLLT-YFRHGIIVGAACEAGEVFRHVRNLYESNGCDFELTK 721

Query: 162  NSSQV-AEKRLLTFKKLFGDRLYVNLQR------------HRGYDRYRESQ---VVQLAY 205
                  A K+L  +        Y+ +Q             +   D+   +    V+ LA 
Sbjct: 722  GKLNTPASKKLARYYD------YLEIQPLTNNLFLTRRQQNPLNDKDLINLNLLVIHLAE 775

Query: 206  THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
              ++ +VAT +S FL++ED     +L+     T +      R    ++      +     
Sbjct: 776  LTKMRVVATCDSHFLNKEDGIFRHILL-----TNIGYDVNERQPELYFRNTDEMLAEFT- 829

Query: 266  DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQ 325
                   +  +    C    +  A ++   I    D                    R ++
Sbjct: 830  -----YLSPDKAKEFCVTNPRYFASLVEPNIRPFPDGTFPPLIASADKDIETMTYRRASE 884

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
                +G   +   +R++ ELN I +  F+  + I    ++ +  +   VG  RGS   S 
Sbjct: 885  LYEYQGKLPEIVSKRIEKELNSIIKNGFAIMYYIAHKLVKKSNDDGYIVG-SRGSVGSSF 943

Query: 386  TAYALTITDIDPLR-----------------------------------------FSLLF 404
             A    IT+++PL                                            + F
Sbjct: 944  VATLCGITEVNPLCPHYRCPHCRYSRFDESGKFGSGFDLPPEKCPDCGEMMIRDGQDIPF 1003

Query: 405  ERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRA 464
            E FL  +    PD D++F    +    +Y+Q  +G     +  T G    K AL  V + 
Sbjct: 1004 ETFLGFNGDKQPDIDLNFSGVYQPHAHKYIQEMFGIAHTYRAGTIGCFAEKNALGMVRKY 1063

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
            L+     ++R  +                                     +  ++G+ R 
Sbjct: 1064 LEDTGEVINRAGQQRL----------------------------------AAGMDGVKRT 1089

Query: 525  ASTHAAGIV--IGDRPLSQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
               H  GIV    +R +    P+        S +  T F+   +    ++K D LG    
Sbjct: 1090 TGQHPGGIVVIPKEREVFDFTPIQYPADKLDSVMTTTHFDFNSLHDT-ILKLDILGHDDP 1148

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            T+L+   D    +   + +      D +   +  +   LGI    S     +     P+ 
Sbjct: 1149 TMLKVLSDMTKIKVTDIPI-----PDEKVMRMFVSTEPLGIPDGTSPA--DSATLGLPEM 1201

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH-PLIDPMLKETQGVIIYQEQVMQI 698
               +   +           +V     +    +   +   +      T   +I     +  
Sbjct: 1202 GTFMARGMIKETKPSRFYDLVQLMGLSHGTDVWKGNAQDLIHQGICTINEVIGCRDGIMT 1261

Query: 699  AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFAD 758
              +  G     +  +   + K      +       +   ++ +      +  ++      
Sbjct: 1262 RLIYYGLPAKSSFDIMEKVRKGKGLSEE-----HEALMREHNVPDWYIDSCKKI-----K 1311

Query: 759  YGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------------ 800
            Y F K+HAAAYA+ + + AW K +YP  + +A  T+  D  +                  
Sbjct: 1312 YMFPKAHAAAYAISALRIAWFKVYYPEAYYSAYFTVRADEFDSDILCVDANTLQNNKRSL 1371

Query: 801  -----------------KIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDNR-IYYSLAA 841
                              I +  ++     I+ +P  +     V+F       +   L A
Sbjct: 1372 RLAFSQNDGKEKDKNLYYIAEIVEEMNLRGIKFLPIDIYDSDPVNFLPEGKGFVRPPLNA 1431

Query: 842  IKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            +  + +  A  I        F +  +   R    K+    L  L     L   
Sbjct: 1432 LPSISSAIAMSIAAERDKGLFKNQSELMQRA---KIGETALGVLRDHNCLRDM 1481



 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 11/93 (11%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--------SQKAC 63
           V L  H+  S  +   +  +++   A     A+A+TD   +     F        +    
Sbjct: 342 VELHCHTKMSAKDAVSNPADVVKLAAQFGHEAVAVTDHGVVQG---FPEAFEAAKAMAKA 398

Query: 64  AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTV 96
              I+ I+G +  I       +           
Sbjct: 399 GKPIKLILGMEGYIIPDGEAVVYGLNLPRGENA 431


>gi|145640822|ref|ZP_01796404.1| DNA polymerase III subunit alpha [Haemophilus influenzae R3021]
 gi|145274336|gb|EDK14200.1| DNA polymerase III subunit alpha [Haemophilus influenzae 22.4-21]
          Length = 276

 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 57/146 (39%), Gaps = 1/146 (0%)

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSD-KITLEKFSVE 946
            +GA D  G  R  L ++L++  + +    K+      ++F     T  D +         
Sbjct: 2    SGAFDKLGPHRAALSKNLEDALRASDQHAKDEAIGQTDMFGVLTETHEDVENAYANTPPY 61

Query: 947  NSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                  + E+  LG Y S HP+  Y   L        ++     RG    +A +V + + 
Sbjct: 62   TEKQILDGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVAASRI 121

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T+KG+R+G  T  + +   +   F
Sbjct: 122  AMTKKGNRLGIATLDDRSGRLDLTLF 147


>gi|321309654|ref|YP_004191983.1| DNA polymerase III subunit alpha [Mycoplasma haemofelis str. Langford
            1]
 gi|319801498|emb|CBY92144.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            haemofelis str. Langford 1]
          Length = 1393

 Score =  155 bits (391), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 141/906 (15%), Positives = 285/906 (31%), Gaps = 173/906 (19%)

Query: 87   NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIM 146
            N+G   +      ++ V    G + L E++S     +Q     +I  + +     E L++
Sbjct: 541  NKGVFNYIHGHKALVYVKNQAGVKDLYEILSIAQT-EQYLGKPQISRNSISSY-RENLLI 598

Query: 147  LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL---FGDRLYVNLQRHRGYDRYRE---SQV 200
            ++   +         +      K    +  L           + R+           +++
Sbjct: 599  VSPPLNSEPIALLLRDDISTFLKASEFYDYLIIPPPSHFVHEVSRNNLDTEEVNALLAKL 658

Query: 201  VQLAYTHELPLVATNNSLFLSEEDYE-----AHDVLMAVAHSTVVSQKDRPRVTPDHYLK 255
             +L+  H + L+    + ++  ++Y+      H   ++     +          P  + +
Sbjct: 659  YELSKEHSIKLLFNYAARYIHPQEYQQYLTLIHTKGLSGKRHPLYKSGANNMDFPLFHYR 718

Query: 256  NRSEMVSIFSDLPEALENTVEIARRCSFILQV-----HAPILPRFIEKECDDIQKEEENE 310
              SE +  +  L    E  ++IA +               I  +      +      EN 
Sbjct: 719  TTSEFLEEYGFLGIPKEELLDIAFKSQQEFLDSVEGGIEVIKKKLHPPIIEGCSDNLENF 778

Query: 311  LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
             R K             +      +   +R  FEL+ I    +S  + +    +Q +  N
Sbjct: 779  CRGKLKE----------LYGENTHEFLEKRFSFELSSIKNNNYSVIYWVSYLLVQESINN 828

Query: 371  NIPVGPGRGSGAGSVTAYALTITDIDPLR------------------------------- 399
               VG  RGS   S+ A+ L I++++PL                                
Sbjct: 829  GYLVG-SRGSVGSSLIAFLLNISEVNPLPPHYRCAKCSVFELHEEFTESGFDLPDKECPH 887

Query: 400  ---------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG 450
                       + FE F+      +PD D++F  + ++    ++++  GH+RV +  T  
Sbjct: 888  CGAILGKDGHHIPFETFMGYGGSKVPDIDLNFSGEYQNRAHNFLRDLLGHDRVYRAGTIS 947

Query: 451  SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
            ++  K A   V    +    ++                                   + +
Sbjct: 948  TMAEKTAFAIVKTYEEETQQEL----------------------------------GLGK 973

Query: 511  LLEISQKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEK 565
            L  I++++  + R +  H  GI  +  D+ +    P+         D   T    + +  
Sbjct: 974  LNWIAKQIIDVKRTSGQHPGGILVIPNDKTIYDFSPINYPANDTSSDWLTTHLEFEDLHD 1033

Query: 566  AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
              L+KFD LG    T L      L +     D   +P DD E  +L  ++  +GI     
Sbjct: 1034 -ALLKFDILGHDDPTTLA-----LLKEITGQDPRNVPTDDREVLNLFKSRKGIGIEDSSD 1087

Query: 626  SGMRQALEGMQPDCIEDIIAL--VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLK 683
                     +       ++    +    P    +++  +   +G          +    +
Sbjct: 1088 FVGEDETGAIGLPEFGTLLTRKIIRTCDPNSFADLIRISGFSHGTGVWKQNIDKLIKSKQ 1147

Query: 684  ETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK 743
                 +I     + +    +G  + EA  +  ++ K           + +S A    +  
Sbjct: 1148 YKLNQVITCRDDITLHLCSAGIQMEEAFAISESIRKG----------KGVSEAQLKLMQD 1197

Query: 744  TIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
                  +   AK   Y F K+HA AY ++S++ AW K ++ + F A   TL  D+ +   
Sbjct: 1198 NKVPQWYIDSAKKMTYIFPKAHATAYVLMSWKIAWYKRYHTLAFFAVFFTLRRDDFDYSL 1257

Query: 804  KFCQDARQFNIQIMPPSVNTPCVDFKVG-------------------------------- 831
                D      +           +F+V                                 
Sbjct: 1258 LVKNDIEAVKDKYHDIFKKMKSNNFEVKSTLKTKDKSAFYVYEAALEFLKCGFRFKNISI 1317

Query: 832  -----------DNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNR 879
                          +      I G+G   A+H++E    + PF SL DF  R    KLNR
Sbjct: 1318 NESDFSKFIPQGQELLIPFIVIDGLGAIKAKHLVEKRNEEGPFQSLNDFAKRT---KLNR 1374

Query: 880  RVLESL 885
             V++ L
Sbjct: 1375 TVIQKL 1380



 Score = 64.8 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+ +S  +G     + + K  A    A+ +TD  ++ S  E  + +   GI+PI 
Sbjct: 264 VPLSIHTKFSAFDGLYVFKDFVSKAKALGHKALGVTDFTSVQSFAEIERVSRKEGIKPIY 323

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTV 96
           G +L+I   +   + N         
Sbjct: 324 GAELEIVPDEYPFIINTDYQREDQY 348


>gi|12044881|ref|NP_072691.1| DNA polymerase III PolC [Mycoplasma genitalium G37]
 gi|1352298|sp|P47277|DPO3_MYCGE RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|3844641|gb|AAC71247.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            genitalium G37]
 gi|166078825|gb|ABY79443.1| DNA polymerase III, alpha subunit, Gram-positive type [synthetic
            Mycoplasma genitalium JCVI-1.0]
          Length = 1451

 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 146/903 (16%), Positives = 286/903 (31%), Gaps = 180/903 (19%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++ V    G+Q L E++S   L D       +  S L +     L+       G I +A 
Sbjct: 615  IVYVKNQRGFQNLYEMLSIA-LTDHNANRPLVLASSLAKFRKSFLL-TENPVQGDIFKAA 672

Query: 160  FFNSSQVAEKRLLT--FKKLFGDRLYVNLQRHRGYDRYRESQVVQL----AYTHELPLVA 213
                    EK +    F  +     Y+      G  +   +  ++L    A   +  +  
Sbjct: 673  LTKPINELEKAIEKVDFVLISQPNAYLGYTLREGLKKELINDAIKLVIKTATKLKKLVAV 732

Query: 214  TNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL------ 267
             +++ F+   + E +  ++            R     +         +    ++      
Sbjct: 733  ASDAYFIHPWENEYYKAIVCAKGLGGKWH--RHFNNKEKEQTVPEVFLHTTDEMLKRMSF 790

Query: 268  ---PEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
                 A +  VE   +   +L ++  +  +   K    + ++   +L +K     E R  
Sbjct: 791  LGEDIAYKLVVENTNKIVKLLDLNELVPTKN--KLYPPVMQDSNQKLIDKTWKQAEKRYG 848

Query: 325  QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            +         +  ++R++ ELN I    F   F I    ++ + K+   VGP RGS   S
Sbjct: 849  KNL------PKLIKERIEKELNAIISNGFGIVFWISHLLVEQSVKDGYFVGP-RGSIGSS 901

Query: 385  VTAYALTITDIDPLR-----------------------------------------FSLL 403
            + A  + I++I+PL                                           ++ 
Sbjct: 902  LIANLIGISEINPLAAHYLCEQCHYFEVSDSVDDGYDLMIRDCPKCHEKASFKGDGHNIP 961

Query: 404  FERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGR 463
            F  F+      +PD D++F  + + +   YV+  +G     +  T  ++  K A      
Sbjct: 962  FATFMGFSGDKIPDIDLNFSSEYQAKAHDYVRKLFGVNNTFRAGTIATVAEKTAYGYARN 1021

Query: 464  ALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
              ++                   +    +A  +     +             QKL G+ R
Sbjct: 1022 YFEI-------------------IKRVDLATTAEIERFK-------------QKLIGIKR 1049

Query: 524  HASTHAAGIVI--GDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKT 578
                H  GI+I   D  + +  P          +   T F    +    ++K D LG   
Sbjct: 1050 TTGQHPGGIMIFPSDHSVYEFTPCGFPADDVESEWKTTHFEYDALGD-AILKLDILGQDD 1108

Query: 579  LTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH---------LLTTKGTLGIFQLESSGMR 629
             T+L+   D        +           + +         +    G +GI +  +  +R
Sbjct: 1109 PTMLKHLADLTKINPQNIPHFDKNLISMFSSNKPLNLKPGIVDEVTGAVGIPEFGTKFVR 1168

Query: 630  QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
            + LE  +P    D+I +  L   G                 I S    +  ++     ++
Sbjct: 1169 KILEQTKPKDFADLIRVSGLSH-GKNVWADNAQKL------IKSNRLTLRDVIACRDDIM 1221

Query: 690  IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
            +Y                 +A      M K  K    K   + +S     G+ +      
Sbjct: 1222 LYLIN-----------KGMQAKDAFEIMEKVRKGI--KVNAKEVSLMQNCGVEQYWINAC 1268

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------- 800
             ++     +Y F K+HAAAY +++++ AW K ++P+ + A  ++ ++   +         
Sbjct: 1269 LKI-----NYLFPKAHAAAYVLMAWRIAWFKLYHPLSYYACLLSFKLKEHDINGFEKGYE 1323

Query: 801  --------------------------KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR 834
                                         +   +    NI++   S+        V  N 
Sbjct: 1324 FIKNRLDELNKLYRIKKIKPKEAELLTSYEVYLEMMARNIKLQQISIQNSNARMFVEHNG 1383

Query: 835  IYY-SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
            +       I G+G   A  I+EA  +KPF SL DF  R    K +   +E L      D 
Sbjct: 1384 VLIAPFITIPGMGEAVASSIVEARNEKPFASLNDFKKRTKITKKHVETMEQLQL---FDE 1440

Query: 894  FGY 896
            F +
Sbjct: 1441 FEH 1443



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 32/90 (35%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  +  +G   +             AI +TD +N+    +F + A    ++ I 
Sbjct: 330 VELVFHTKMTAFDGINDIEEYAQFAKERGWKAITVTDKDNIHIYPKFYEVAKKYDLKAIY 389

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       + N   T       ++ 
Sbjct: 390 GLEFNLTDDHIKIVHNPDNTKLSDATFVIF 419


>gi|257463850|ref|ZP_05628237.1| DNA polymerase III alpha subunit [Fusobacterium sp. D12]
          Length = 289

 Score =  154 bits (390), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 1/162 (0%)

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
            +  + LN++ LE+ ++AGALD    +R + ++SLD +  Y Q   K    +  N+F   K
Sbjct: 1    MRKEGLNKKGLEAFIYAGALDSLPGNRHEKIESLDKVLDYVQRKSKADDIQQMNLFGDSK 60

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
                 + +L +       +  E E+  LGFY S +PLD Y+ + R               
Sbjct: 61   KNLI-QFSLPQLEEYPMDILLEKEKEFLGFYVSANPLDKYENLYRSFEFDELNVLKEEHT 119

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               + L  +V + ++ +T+KG  + +        +     FP
Sbjct: 120  EKEVWLYGIVQNLKKTRTKKGDPMAFADLENYQGQIPTVIFP 161


>gi|210608497|ref|ZP_03287873.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787]
 gi|210152988|gb|EEA83994.1| hypothetical protein CLONEX_00052 [Clostridium nexile DSM 1787]
          Length = 1269

 Score =  154 bits (389), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 121/719 (16%), Positives = 221/719 (30%), Gaps = 137/719 (19%)

Query: 53   FSA-----LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
              A     ++F +      I         +   +    TN            ++L     
Sbjct: 604  AGATAEIFVKFVEMLKEREIT-------TLKGVNAFGATNPDAVKKMPTYHAIILAKNDV 656

Query: 108  GYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA 167
            G   L  L+S  +L     +  RI  S       EGL++ +   +G + +A   N S   
Sbjct: 657  GRVNLYRLISLSHLT-YYARRPRIPKSEFNRY-REGLLIGSACEAGELYQAVLNNKSDET 714

Query: 168  EKRLLTFKKLFGDRLYVNLQRHRGYD-----------------RYRESQVVQLAYTHELP 210
              RL+ F        Y+ +Q                       +    ++V+L      P
Sbjct: 715  IARLVEFYD------YLEIQPLGNNQFMVDSPKYSQIRSDEDLKDINRKIVKLGEEFHKP 768

Query: 211  LVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
            +VAT +  FL  ED E +  ++        +    P                      +A
Sbjct: 769  VVATCDVHFLDAED-EVYRRIIMTGKGFGDADSQPPLYLRTTEEMMEEFAYLGSK---KA 824

Query: 271  LENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAK 330
             E  +E   + S +++  +P+ P       +D     +  LR+   +             
Sbjct: 825  HEVVIENTVKISDMIEKISPVRPDKCPPVIED----SDQMLRDICYSKAHSMYGDPL--- 877

Query: 331  GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                +   +RL+ ELN I    F+  ++I    +  + ++   VG  RGS   S  A   
Sbjct: 878  ---PEIVVERLERELNSIISNGFAVMYIIAQKLVWKSVEDGYLVG-SRGSVGSSFAATMA 933

Query: 391  TITDIDPLR---------------------------------------------FSLLFE 405
             IT+++PL                                              F + FE
Sbjct: 934  GITEVNPLSPHYYCPNCFYSDFESEEVRAYAGGCGYDMPDKLCPNCGKPLVKDGFDIPFE 993

Query: 406  RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
             FL       PD D++F  D +    +Y +  +G  +  +  T G+L  K A        
Sbjct: 994  TFLGFKGNKEPDIDLNFSGDYQSNAHKYTEVIFGEGQTYRAGTIGTLADKTA-------- 1045

Query: 466  QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
               Y  V    +                                 +  I Q   G+ R  
Sbjct: 1046 ---YGFVKNYYEEHGQGKRK-----------------------CEIERILQGCTGIRRST 1079

Query: 526  STHAAGIVIGD--RPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581
              H  GI++    + ++   P+           VT           L+K D LG    T+
Sbjct: 1080 GQHPGGIIVLPLGQDINSFTPVQHPANDMTTDIVTTHFDYHSIDHNLLKLDILGHDDPTI 1139

Query: 582  LQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCI 640
            ++   + + Q  G     + IP DD     L     +LGI   +  G      G+     
Sbjct: 1140 IKMLEELVEQLTGKPFKATDIPLDDQGVMKLFRDTSSLGITPDDIGGCPVGCLGIPEFGT 1199

Query: 641  EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV-IIYQEQVMQI 698
            + +I +V   +P  + +++  +   +G +  ++    +    K T    I  ++ +M  
Sbjct: 1200 DFVIQMVVDTKPKTLSDLIRISGLSHGTDVWLNNAQELIKSGKATISTAICTRDDIMTY 1258



 Score = 77.9 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE---FSQKA-CAAGI 67
           V L  H+  S ++G   +N I+ +      PAIAITD   + +  +   F +        
Sbjct: 367 VELHCHTKMSDMDGVSDVNKIVKRAHDWGHPAIAITDHGVVQAFPDANHFIEGLDKDDPF 426

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           + I G +  +         + G        
Sbjct: 427 KVIYGVEAYLVDDLTDIAVHAGNQTLDDTY 456


>gi|240146858|ref|ZP_04745459.1| DNA polymerase III, alpha subunit [Roseburia intestinalis L1-82]
 gi|257200984|gb|EEU99268.1| DNA polymerase III, alpha subunit [Roseburia intestinalis L1-82]
          Length = 807

 Score =  154 bits (388), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 138/852 (16%), Positives = 264/852 (30%), Gaps = 172/852 (20%)

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             +  RI  S   +   EGL++ +   +G + RA      +    RL+ F        Y+
Sbjct: 1   YNKRPRIPKSEFVKY-REGLLLGSACEAGELYRAIVGGRPEEEIIRLVKFYD------YL 53

Query: 185 NLQRHRGYD----------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
            +Q     +                +    ++V+L  T    +VAT +  FL  ED    
Sbjct: 54  EIQPLGNNEFMLKSDKESVSTIEELQDINRRIVKLGETFGKLVVATCDVHFLDPEDEIYR 113

Query: 229 DVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVH 288
            ++MA             +   D           +  +         E     +      
Sbjct: 114 RIIMA---------GKGFKDADDQAPLYLRTTEEMLKEFEYLGSAKAEEVVITNPNKIAD 164

Query: 289 APILPRFIEKE-CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                  +  + C  + +  +  LR+           +            ++RLD ELN 
Sbjct: 165 MCEKIAPVRPDKCPPVIENSDQMLRDICYTKAHSMYGE------ELPAIVKERLDRELNS 218

Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR-------- 399
           I    ++  ++I    +  + ++   VG  RGS   S  A    IT+++PL+        
Sbjct: 219 IISNGYAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFAATMSGITEVNPLQAHYRCPNC 277

Query: 400 -------------------------------------FSLLFERFLNPDRMSMPDFDIDF 422
                                                F + FE FL       PD D++F
Sbjct: 278 KYSDFDSPEVKAFSGRSGCDMPDKICPVCGEKLVKDGFDIPFETFLGFKGNKEPDIDLNF 337

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
             + + +   Y +  +G+ +  +  T G+L  K A   +    +                
Sbjct: 338 SGEYQSKAHAYCEVIFGYGQTFRAGTIGTLADKTAFGYIKNYYE---------------- 381

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLS 540
                              R        +  I Q   G+ R    H  GIV       ++
Sbjct: 382 ------------------ERGIHKRNCEIDRIVQGCVGVRRTTGQHPGGIVVLPVGEEIN 423

Query: 541 QLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL 598
              P+           VT           L+K D LG    T+++     + Q    +D 
Sbjct: 424 TFTPVQHPANDMTTATVTTHFDYHSIDHNLLKLDILGHDDPTMIR-----MLQDLTGIDP 478

Query: 599 SLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNI 658
             IP DD     L      LG+   +  G+     G+     E  + +V   +P    ++
Sbjct: 479 VTIPLDDEAVMSLFKNTSALGVTPEDIGGIPLGCLGIPEFGTEFAMQMVIDAKPQEFSDL 538

Query: 659 VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
           +  +   +G +  +     +      T    I     + I  +  G    ++  +  ++ 
Sbjct: 539 IRISGLSHGTDVWLGNAQTLIEQGLATISTAICTRDDIMIYLIQMGLDSEQSFTIMESVR 598

Query: 719 KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
           K    + +     +      + + +    +  ++      Y F K+HAAAY +++++ A+
Sbjct: 599 KGKGLKEE-----WKEEMRAHDVPEWYIDSCLKI-----KYMFPKAHAAAYVMMAWRIAY 648

Query: 779 MKTHYPVEFLAASMTLEMDNV---------------------------------EKIKKF 805
            K +YP+ + AA  ++                                       +  K 
Sbjct: 649 CKVYYPLAYYAAYFSIRATGFNYEIMCQGRERLTYFQKDYERRKDSLSKKEQDVYRDMKI 708

Query: 806 CQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
            Q+         P  +     D F++ D ++  +L  I G+G   A  + EA+ D  F S
Sbjct: 709 VQEMYARGFDFTPIDIYRAKPDRFQIIDGKLMPALNTIDGMGDNAAIAVAEAAKDGKFLS 768

Query: 865 LEDFCSRVDSKK 876
            +DF  R  + K
Sbjct: 769 RDDFRQRTKATK 780


>gi|57867460|ref|YP_189102.1| DNA polymerase III, alpha subunit, putative [Staphylococcus
           epidermidis RP62A]
 gi|57638118|gb|AAW54906.1| DNA polymerase III, alpha subunit, putative [Staphylococcus
           epidermidis RP62A]
          Length = 828

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 117/542 (21%), Positives = 222/542 (40%), Gaps = 51/542 (9%)

Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLC 476
           D DID    +R  +I  ++  YG +RV  + T+G+  AK+A++   R L +P ++   L 
Sbjct: 2   DIDIDCEGSKRQRIIGALKKHYGEDRVLNVCTYGTEGAKSAIKMAARGLNIPDTEAQYLG 61

Query: 477 KLIPNDPAHPVSL------QAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAA 530
             I  +     S+          D     + +       RLLE + KLEGL      HA 
Sbjct: 62  SFIKVERGQQWSIKDTLYGNPDKDRKPDTQFKNEMEKYPRLLETAMKLEGLVTRRGIHAG 121

Query: 531 GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
           G++I +    +   +      D+ VTQ+N+   E  G +KFD L ++ L  ++ +L+ L+
Sbjct: 122 GVIIFNDEAYKNNAIMTASGGDVHVTQYNLSDSEYMGGVKFDLLSVENLDRIRATLELLS 181

Query: 591 QRGVKV-------------DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
           +  +                   +  + +E + L +T     +FQ ++   +  L+ +QP
Sbjct: 182 KDVLIDNTKSLRENFSDLLHPKNLDLESNEYFELASTGEINDLFQFQTEIGQTTLKRVQP 241

Query: 638 DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQ 697
           +  E   A  SL R          +     K  I   +  +       + + I +E ++ 
Sbjct: 242 ETFEQFCAANSLMRLQSDGEEQPIDKYIRHKNDINEWYKEMREFGLNEEEIKIMEEHLLH 301

Query: 698 ---------------IAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
                              +S +++ E + LR+A+ K     +D+ K  F S   + G  
Sbjct: 302 DKGLNITQENSMGLSADNRISNFTILEQNKLRKAIAKPKGSALDQIKSLFYSKGKECGAR 361

Query: 743 KTIAVNIFELLAKFA-DYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASM--------- 792
           +     ++ +       Y F+  H  AY+VI  Q   +   +P  +   +          
Sbjct: 362 EVFLDYVWNVQFAMQFSYSFSLLHTTAYSVIGIQNLELNRRFPRIYWQTACLNVDSDSIS 421

Query: 793 -TLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK--VGDNRIYYSLAAIKGVGTTT 849
              +  + EKI       ++  + +  PS+N   ++F   V  N I Y L  +K +    
Sbjct: 422 TDSKDIDYEKIANGIGKMKENGVTVKLPSINKSTLEFSPDVEHNAIVYGLKPVKNINNEI 481

Query: 850 ARHIMEASADKPFDSLEDFCSRV-DSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
             HI+   A++P+ SL+D  +++ D+K +  + L S+V +G LD FG  +  ++  +  I
Sbjct: 482 VDHII---ANRPYHSLDDVLTKLYDTKLITNKHLISIVKSGMLDEFGERKKIMMDVVKYI 538

Query: 909 QK 910
             
Sbjct: 539 TD 540


>gi|54020575|ref|YP_116058.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae 232]
 gi|53987748|gb|AAV27949.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 232]
          Length = 1469

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 143/922 (15%), Positives = 290/922 (31%), Gaps = 183/922 (19%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSG-PID 156
             + ++     G ++L +LVS     +       I    LQ+     L++ +GG     I 
Sbjct: 607  QLTIIAKNQIGIKKLYKLVSLANTEN-LISRPLIFYDHLQKDP--DLLIGSGGPESLLIQ 663

Query: 157  RAFFFNSSQVAE-KRLLTFKKLFGDRLYVNLQRHRGY----DRYRESQVVQLAYTHELPL 211
               +F    VAE   +  F ++     +++L +   +           ++ LA   ++P 
Sbjct: 664  TMLYFGPKNVAEFAHIFDFIEIPPPSAFIHLVKREIFTKDQIEEMLKNLINLAKKLQIPA 723

Query: 212  VATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
            VA  +  +   ++   +++ + A     V       R       +N            E 
Sbjct: 724  VAIGDVRYCLPKEKIFYELYIYAKGVGGVNHVLFDHREKEREDFRNSHIFPEKHFFSTEE 783

Query: 271  LENTVEIARRCS-----------FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            L+   E                 F+  +    +               E +L+       
Sbjct: 784  LKKEFEFLEDQQLIEEIVVKNSNFVADLIENNIQIIKSGLYPPSFDNSEVKLKEFVYKKA 843

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
              +         +  +    R+  EL  I    F   + I    +  AK     V   RG
Sbjct: 844  YEKYG------RFLPKLIENRIKTELEPIINHGFHVVYWISKHIVTEAKSQGAIVD-SRG 896

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   S+ A+   ITD++PL                                         
Sbjct: 897  SVGSSIVAFLTGITDVNPLLPHYWCKKCSKVEFPKSQQFLSGYDLPDKNCLDCYKKMEKD 956

Query: 400  -FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
              ++ FE FL  +   +PD D++F    + ++  +V+  +G  +  +  T  +   K   
Sbjct: 957  GHNIPFETFLGFNVEKVPDIDLNFSGQTQLKMHDFVRTLFGINKTFRAGTILTNAEKTVY 1016

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
                +  +       R       D    VS                  +   L  ++ K 
Sbjct: 1017 GLARKLGEY------RARLDPKFDLNREVSYF----------------TSAFLDFLATKA 1054

Query: 519  EGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            +G+ R +  HA GI  +  ++ +    P+     ++   + +     +   L   + L L
Sbjct: 1055 QGVKRTSGKHAGGIIVIPQNQEIEDFTPINYPANNEK--SDWKTTHFDYNALH-DNLLKL 1111

Query: 577  KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG---------------TLGIF 621
              L     ++    ++   +    IP  D +   L  +                 T+GI 
Sbjct: 1112 DILGHDDPTILLHLEKLTNIKSDEIPKSDPKILSLFRSCKELGISSDQILGEVTGTIGIP 1171

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            +  +  +R+ L+  Q     DI+A+  L   G              K+ +      I+ +
Sbjct: 1172 EFGTQFVRKMLQIAQVKSFADIVAICGLAH-GTGVWQDNAEKLILEKKHV------INEL 1224

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            +     ++IY   + +       +++ E     + +  + KE ++               
Sbjct: 1225 ISCRDDIMIYL--LQKNIDHQVAFNIMENVRKGKGLTDQEKELLEL-------------- 1268

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
                  + +    +   Y F K+HA AYA+ +++ A+ K ++P+ F ++  ++  D  + 
Sbjct: 1269 --KKVPSWYIESLQKIGYLFPKAHAVAYAMKAWKIAYFKLYHPLAFYSSYFSIRPDVKDL 1326

Query: 802  IKKFC--------------------------QDARQFNIQIMPPSVNTPCVDFKV----- 830
                                               +  IQ +  S+      F++     
Sbjct: 1327 ETLIQPVEKIREKINILNKKRLESQKGIQQLSAKEKDLIQFLEISLELKSRGFEIEKVSL 1386

Query: 831  ------------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
                         +N +     AI G+G   AR I++A   +PF S+EDF  R ++   N
Sbjct: 1387 EKSEAQEWIINKENNSLIPPFIAIDGIGDVNARKIVQARNLRPFSSIEDFEKRTET---N 1443

Query: 879  RRVLESLVFAGALDCFGYSRMQ 900
               L+ L   G  D     R Q
Sbjct: 1444 STSLKKLKELGIFDKISK-RAQ 1464



 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 21  SLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
           S ++G  S    +     +   AI ITD +++ +  EF     +  I+PI G    
Sbjct: 332 STMDGISSAKEYVQHALKNGYLAIGITDLDSVQAFPEFYNAIKSTNIKPIYGSTFS 387


>gi|320093662|ref|ZP_08025540.1| error-prone DNA polymerase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979385|gb|EFW10869.1| error-prone DNA polymerase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 219

 Score =  152 bits (384), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 91/220 (41%), Gaps = 11/220 (5%)

Query: 5   LEKS-PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
           +  + P +  L  HS+++ L+G      ++         A+A+ D + + SA+  +  A 
Sbjct: 1   MSGTRPRYAELHAHSAFTFLDGTCEPAEMVRAAQGLGLEALAVLDVDGMHSAVRTTMAAR 60

Query: 64  AAGIQPIIGCQLDIDMQDNLKMTNQGKTP--------FPTVPSIVLLVSTAEGYQRLIEL 115
            AG+  + G +L ID             P              + +L ++ +GY  L+  
Sbjct: 61  EAGLPIVHGSELTIDASSLRPALPGAGGPGWGLRPGAHDPGVRLPVLAASPQGYSALVSA 120

Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
           +S   L   G++     L  L     +  ++LTG   GP+ RA   + +  A + L +  
Sbjct: 121 MSDHALSRPGRRDSSHRLDDLSGRARD-WLVLTGSGRGPLRRALRSHGTAGARRVLDSLV 179

Query: 176 KLFG-DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVAT 214
            LFG D + V +QR  G        +  LA T  L LVAT
Sbjct: 180 DLFGRDAVVVEVQRRAGDGPEEADALAGLARTRGLRLVAT 219


>gi|71893884|ref|YP_279330.1| DNA polymerase III PolC [Mycoplasma hyopneumoniae J]
 gi|71852011|gb|AAZ44619.1| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae J]
          Length = 1468

 Score =  152 bits (383), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 143/922 (15%), Positives = 290/922 (31%), Gaps = 183/922 (19%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSG-PID 156
             + ++     G ++L +LVS     +       I    LQ+     L++ +GG     I 
Sbjct: 606  QLTIIAKNQIGIKKLYKLVSLANTEN-LISRPLIFYDHLQKDP--DLLIGSGGPESLLIQ 662

Query: 157  RAFFFNSSQVAE-KRLLTFKKLFGDRLYVNLQRHRGY----DRYRESQVVQLAYTHELPL 211
               +F    VAE   +  F ++     +++L +   +           ++ LA   ++P 
Sbjct: 663  TMLYFGPKNVAEFAHIFDFIEIPPPSAFIHLVKREIFTKDQIEDMLKNLINLAKKLQIPA 722

Query: 212  VATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
            VA  +  +   ++   +++ + A     V       R       +N            E 
Sbjct: 723  VAIGDVRYCLPKEKIFYELYIYAKGVGGVNHVLFDHREKEREDFRNSHIFPEKHFFSTEE 782

Query: 271  LENTVEIARRCS-----------FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            L+   E                 F+  +    +               E +L+       
Sbjct: 783  LKKEFEFLEDQQLIEEIVVKNSNFVADLIENNIQIIKSGLYPPSFDNSEVKLKEFVYKKA 842

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
              +         +  +    R+  EL  I    F   + I    +  AK     V   RG
Sbjct: 843  YEKYG------RFLPKLIENRIKTELEPIINQGFHVVYWISKHIVTEAKSQGAIVD-SRG 895

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   S+ A+   ITD++PL                                         
Sbjct: 896  SVGSSIVAFLTGITDVNPLLPHYWCKKCSKVEFPKSQQFLSGYDLPDKNCLDCYKKMEKD 955

Query: 400  -FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
              ++ FE FL  +   +PD D++F    + ++  +V+  +G  +  +  T  +   K   
Sbjct: 956  GHNIPFETFLGFNVEKVPDIDLNFSGQTQLKMHDFVRTLFGINKTFRAGTILTNAEKTVY 1015

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
                +  +       R       D    VS                  +   L  ++ K 
Sbjct: 1016 GLARKLGEY------RARLDPKFDLNREVSYF----------------TSAFLDFLATKA 1053

Query: 519  EGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            +G+ R +  HA GI  +  ++ +    P+     ++   + +     +   L   + L L
Sbjct: 1054 QGVKRTSGKHAGGIIVIPQNQEIEDFTPINYPANNEK--SDWKTTHFDYNALH-DNLLKL 1110

Query: 577  KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG---------------TLGIF 621
              L     ++    ++   +    IP  D +   L  +                 T+GI 
Sbjct: 1111 DILGHDDPTILLHLEKLTNIKSDEIPKSDPKILSLFRSCKELGISSDQILGEVTGTIGIP 1170

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            +  +  +R+ L+  Q     DI+A+  L   G              K+ +      I+ +
Sbjct: 1171 EFGTQFVRKMLQIAQVKSFADIVAICGLAH-GTGVWQDNAEKLILEKKHV------INEL 1223

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            +     ++IY   + +       +++ E     + +  + KE ++               
Sbjct: 1224 ISCRDDIMIYL--LQKNIDHQVAFNIMENVRKGKGLTDQEKELLEL-------------- 1267

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
                  + +    +   Y F K+HA AYA+ +++ A+ K ++P+ F ++  ++  D  + 
Sbjct: 1268 --KKVPSWYIESLQKIGYLFPKAHAVAYAMKAWKIAYFKLYHPLAFYSSYFSIRPDVKDL 1325

Query: 802  IKKFC--------------------------QDARQFNIQIMPPSVNTPCVDFKV----- 830
                                               +  IQ +  S+      F++     
Sbjct: 1326 ETLIQPVEKIREKISILNKKRLESQKGIQQLSAKEKDLIQFLEISLELKSRGFEIEKVSL 1385

Query: 831  ------------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
                         +N +     AI G+G   AR I++A   +PF S+EDF  R ++   N
Sbjct: 1386 EKSEAQEWIINKENNSLIPPFIAIDGIGDVNARKIVQARNLRPFSSIEDFEKRTET---N 1442

Query: 879  RRVLESLVFAGALDCFGYSRMQ 900
               L+ L   G  D     R Q
Sbjct: 1443 STSLKKLKELGIFDKISK-RAQ 1463



 Score = 69.0 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%)

Query: 21  SLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
           S ++G  S    +     +   AI I D +++ +  EF     +  I+PI G    
Sbjct: 331 STMDGISSAKEYVQHALKNGYLAIGIADLDSVQAFPEFYNAIKSTNIKPIYGSTFS 386


>gi|304373374|ref|YP_003856583.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
 gi|304309565|gb|ADM22045.1| DNA polymerase III alpha subunit [Mycoplasma hyorhinis HUB-1]
          Length = 1457

 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 146/940 (15%), Positives = 309/940 (32%), Gaps = 167/940 (17%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP----SIVLLVSTAEGYQRLIELVSRMYLL 122
            I+ I   + +I   ++L         F         I ++V   +G + L +LVS     
Sbjct: 568  IKLI---EKNIKDLNSLNQVGSNILDFKRRGLFSKEIRVIVKNQQGLKELFKLVSLSNT- 623

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT--FKKLFGD 180
            D       +    +  + +  L+  T G    +    F+N     E  +    F ++   
Sbjct: 624  DNFLSKPLLFYDKI--LPSNNLLWGTSGLDSQLMEILFYNHHNDLETLIKKFDFIEIPTP 681

Query: 181  RLYVNLQ-RHRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA- 235
              +++L  R++         +   ++LA  H+  +VA++   ++++ED   H V +    
Sbjct: 682  SSFIHLIKRNKIKKEDIIKGLKLVIELARKHKKLIVASSEPRYINKEDKIFHLVYIYAKG 741

Query: 236  ---------HSTVVSQKDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFIL 285
                           ++D    T             +   D     E  V    + + ++
Sbjct: 742  VGGKPHNLFGGDTDKKEDHIFPTKYFMTTQELKAEFAFLEDQDLIDEIVVRNPNKIADLV 801

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            +    I  +    + DD      +++++        +  +              R++ EL
Sbjct: 802  EQVQVIKDKLYPPKFDD----SASKIKHLVYQKAHEKYGENL------PDQIALRIEKEL 851

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------ 399
            N I    +   + I  + +  AK     VG  RGS   SV AY + IT+++PL       
Sbjct: 852  NPIIDNGYDVVYWISKELVDKAKSEGQKVG-SRGSVGSSVVAYLIGITEVNPLEPHYVCN 910

Query: 400  -----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQ 424
                                                ++ FE FL      +PD D++F  
Sbjct: 911  QCKNVKFSTDSNVLSGFDLKDKKCKTCNILYDKDGQNIPFETFLGFKADKVPDIDLNFAG 970

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D + +   Y++  +G +   +  T      K+A     +  ++                 
Sbjct: 971  DFQVQTHNYIRELFGEKFTFRAGTILGYAEKSAFSLAKKLNEI----------------- 1013

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL--SQL 542
                   +  +    E   +  S   L  ++ K  G+ +    H  GI++    L   + 
Sbjct: 1014 ----QTRLYLNEHPNEYEFSMYSNTFLDFLATKTSGVKKTTGQHPGGIIVIPNDLEIEEF 1069

Query: 543  VPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLS 599
             P+     D  SD   T F+ + I    ++KFD LG     ++++      ++     + 
Sbjct: 1070 TPINFPANDDNSDWKTTHFDFENIHD-NVLKFDLLGHDDPIMVRE-----LEKLTNTKVE 1123

Query: 600  LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
             IP  D +   L ++   L I   +  G +    G+       +  +++  R     +++
Sbjct: 1124 NIPKSDPKIIKLFSSLEPLNIDSKDLPGEQNGARGLPEFGTSFVRRMLNTARVESFSDLI 1183

Query: 660  VYNNRKNGKEKIVSIHPLIDPMLKET-QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMG 718
              +   +G          +      T + VI  ++ +M       G     +  +  ++ 
Sbjct: 1184 KVSGLSHGTNVWQDNAETLISQHNLTLRDVISCRDDIMLYLIN-KGVDSLVSFNIMESVR 1242

Query: 719  KKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAW 778
            K     +++Q+                    +    K   Y F K+HAAAY +++++  +
Sbjct: 1243 KGKSITVEQQQILENHN----------VPIWYIESLKKIKYMFPKAHAAAYVLMAWRITY 1292

Query: 779  MKTHYPVEFLAASMTLEMDNVEKIKKF------------------------CQDARQFNI 814
             K +YP+ F +   ++ +D                                  +  +  I
Sbjct: 1293 YKLYYPLAFYSVYFSIRIDFKNIDALLLPKQQLSSQIMALKQRENSKKEDKLSEKEKKLI 1352

Query: 815  QIMPPSVNTPCVDFKV-----------------GDNRIYYSLAAIKGVGTTTARHIMEAS 857
             I+  +       F++                  +N +    +++ G+G   A  I+ A 
Sbjct: 1353 PILEVAEELKARGFEIEKINLNLSQATQWVINEENNSLIPPFSSLDGIGEANAAKIIAAR 1412

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             +K F S+EDF  R     +N  V++ L   G       +
Sbjct: 1413 TEKSFSSIEDFEKRA---GVNSTVIKKLKDMGVFKDLSET 1449



 Score = 69.0 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 31/91 (34%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L   +  S ++G  +  + +         AI I+D  ++ +  +F      A I+ I 
Sbjct: 317 VELFARTKMSTMDGVTNAQDYVKIAKLLGHSAIGISDLESVQAFPDFYFACKNAKIKAIY 376

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           G           K+ N  +         V+ 
Sbjct: 377 GSTFSTTHSKIFKVLNLRQNQDLEHARYVVF 407


>gi|297520689|ref|ZP_06939075.1| DNA polymerase III subunit alpha [Escherichia coli OP50]
          Length = 305

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 151/304 (49%), Positives = 213/304 (70%), Gaps = 12/304 (3%)

Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
             AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+  
Sbjct: 1   YEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKS 60

Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHLLTTKG 616
            +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +L    
Sbjct: 61  DVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSE 120

Query: 617 TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVS- 673
           T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E+I   
Sbjct: 121 TTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYP 180

Query: 674 ----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQK 729
                H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  EEM KQ+
Sbjct: 181 DVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQR 240

Query: 730 ERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLA 789
             F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K HYP EF+A
Sbjct: 241 SVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMA 300

Query: 790 ASMT 793
           A MT
Sbjct: 301 AVMT 304


>gi|330946296|gb|EGH47446.1| error-prone DNA polymerase [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 126

 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 20/143 (13%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +     +  L   S++S   GA S   + ++       A+AITD   L   +   Q + +
Sbjct: 1   MTSE--YAELHCLSNFSFQRGASSARELFERAVRHGYKALAITDECTLAGIVRAWQASKS 58

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+  I+G ++ I+                  P +VLLV    GY+ L  L++      +
Sbjct: 59  TGLPLIVGSEMHIENG----------------PKVVLLVENQAGYEALCTLITVARRRAK 102

Query: 125 GKQSVRICLSWLQEIGTEGLIML 147
            K   R+      E   +GL+ L
Sbjct: 103 -KGEYRVLREDF-EPAPDGLLAL 123


>gi|312601484|gb|ADQ90739.1| DNA polymerase III, alpha chain [Mycoplasma hyopneumoniae 168]
          Length = 1447

 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 143/922 (15%), Positives = 291/922 (31%), Gaps = 183/922 (19%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSG-PID 156
             + ++     G ++L +LVS     +       I    LQ+     L++ +GG     I 
Sbjct: 585  QLTIVAKNQIGIKKLYKLVSLANTEN-LISRPLIFYDHLQKDP--DLLIGSGGPESLLIQ 641

Query: 157  RAFFFNSSQVAE-KRLLTFKKLFGDRLYVNLQRHRGY----DRYRESQVVQLAYTHELPL 211
               +F    VAE   +  F ++     +++L +   +           ++ LA   ++P 
Sbjct: 642  TMLYFGPKNVAEFAHIFDFIEIPPPSAFIHLVKREIFTKDQIEDMLKNLINLAKKLQIPA 701

Query: 212  VATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
            VA  +  +   ++   +++ + A     V       R       +N            E 
Sbjct: 702  VAIGDVRYCLPKEKIFYELYIYAKGVGGVNHVLFDHREKEREDFRNSHIFPEKHFFSTEE 761

Query: 271  LENTVEIARRCS-----------FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            L+   E                 F+  +    +               E +L+       
Sbjct: 762  LKKEFEFLEDQQLIEEIVVKNSNFVADLIENNIQIIKSGLYPPSFDNSEVKLKEFVYKKA 821

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
              +         +  +    R+  EL  I    F   + I    +  AK     V   RG
Sbjct: 822  YEKYG------RFLPKLIENRIKTELEPIINQGFHVVYWISKHIVTEAKSQGAIVD-SRG 874

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   S+ A+   ITD++PL                                         
Sbjct: 875  SVGSSIVAFLTGITDVNPLLPHYWCKKCSKVEFPKSQQFLSGYDLPDKNCLDCYKKMEKD 934

Query: 400  -FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
              ++ FE FL  +   +PD D++F    + ++  +V+  +G  +  +  T  +   K   
Sbjct: 935  GHNIPFETFLGFNVEKVPDIDLNFSGQTQLKMHDFVRTLFGINKTFRAGTILTNAEKTVY 994

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
                +  +       R       D    VS                  +   L  ++ K 
Sbjct: 995  GLARKLGEY------RARLDPKFDLNREVSYF----------------TSAFLDFLATKA 1032

Query: 519  EGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            +G+ R +  HA GI  +  ++ +    P+     ++   + +     +   L   + L L
Sbjct: 1033 QGVKRTSGKHAGGIIVIPQNQEIEDFTPINYPANNEK--SDWKTTHFDYNALH-DNLLKL 1089

Query: 577  KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG---------------TLGIF 621
              L     ++    ++   +    IP  D +   L  +                 T+GI 
Sbjct: 1090 DILGHDDPTILLHLEKLTNIKSDEIPKSDPKILSLFRSCKELGISSDQILGEVTGTIGIP 1149

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            +  +  +R+ L+  Q     DI+A+  L   G              K+ +      I+ +
Sbjct: 1150 EFGTQFVRKMLQIAQVKSFADIVAICGLAH-GTGVWQDNAEKLILEKKHV------INEL 1202

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            +     ++IY   + +       +++ E     + +  + KE ++               
Sbjct: 1203 ISCRDDIMIYL--LQKNIDHQVAFNIMENVRKGKGLTDQEKELLEL-------------- 1246

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
                  + +    +   Y F K+HA AYA+ +++ A+ K ++P+ F ++  ++  D  + 
Sbjct: 1247 --KKVPSWYIESLQKIGYLFPKAHAVAYAMKAWKIAYFKLYHPLAFYSSYFSIRPDVKDL 1304

Query: 802  IKKFC-QDARQFN-------------------------IQIMPPSVNTPCVDFKV----- 830
                   +  +                           IQ +  S+      F++     
Sbjct: 1305 ETLIQPAEKIREKINILNKKRLESQKGIQQLSAKEKDLIQFLEISLELKSRGFEIEKVSL 1364

Query: 831  ------------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
                         +N +     AI G+G   AR I++A   +PF S+EDF  R ++   N
Sbjct: 1365 EKSEAQEWIINKENNSLIPPFIAIDGIGDVNARKIVQARNLRPFSSIEDFEKRTET---N 1421

Query: 879  RRVLESLVFAGALDCFGYSRMQ 900
               L+ L   G  D     R Q
Sbjct: 1422 STSLKKLKELGIFDKISK-RAQ 1442



 Score = 69.0 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%)

Query: 21  SLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
           S ++G  S    +     +   AI I D +++ +  EF     +  I+PI G    
Sbjct: 310 STMDGISSAKEYVQHALKNGYLAIGIADLDSVQAFPEFYNAIKSTNIKPIYGSTFS 365


>gi|330723726|gb|AEC46096.1| DNA polymerase III PolC [Mycoplasma hyorhinis MCLD]
          Length = 1457

 Score =  149 bits (376), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 143/949 (15%), Positives = 307/949 (32%), Gaps = 185/949 (19%)

Query: 67   IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP----SIVLLVSTAEGYQRLIELVSRMYLL 122
            I+ I   + +I   ++L         F         I ++V   +G + L +LVS     
Sbjct: 568  IKLI---EKNIKDLNSLNQVGSNILDFKRRGLFSKEIRVIVKNQQGLKELFKLVSLSNT- 623

Query: 123  DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT--FKKLFGD 180
            D       +    +  + +  L+  T G    +    F+N     E  +    F ++   
Sbjct: 624  DNFLSKPLLFYDKI--LPSNNLLWGTSGLDSQLMEILFYNHHNDLETFIKKFDFIEIPTP 681

Query: 181  RLYVNLQ-RHRGYDRYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA- 235
              +++L  R++         +   ++LA  H+  +VA++   ++++ED   H V +    
Sbjct: 682  SSFIHLIKRNKIKKEDIIKGLKLVIELARKHKKLIVASSEPRYINKEDKIFHLVYIYAKG 741

Query: 236  ---------HSTVVSQKDRPRVTPDHYLKNR-SEMVSIFSDLPEALENTVEIARRCSFIL 285
                           ++D    T             +   D     E  V    + + ++
Sbjct: 742  VGGKPHNLFGGDTDKKEDHIFPTKYFMTTQELKAEFAFLEDQDLIDEIVVRNPNKIADLV 801

Query: 286  QVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
            +    I  +    + DD      +++++        +  +              R++ EL
Sbjct: 802  EQVQVIKDKLYPPKFDD----SASKIKHLVYQKAHEKYGENL------PDQIALRIEKEL 851

Query: 346  NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------ 399
            N I    +   + I  + +  AK     VG  RGS   SV AY + IT+++PL       
Sbjct: 852  NPIIDNGYDVVYWISKELVDKAKSEGQKVG-SRGSVGSSVVAYLIGITEVNPLEPHYVCN 910

Query: 400  -----------------------------------FSLLFERFLNPDRMSMPDFDIDFCQ 424
                                                ++ FE FL      +PD D++F  
Sbjct: 911  QCKNVKFSTDSNVLSGFDLKDKKCKTCNILYDKDGQNIPFETFLGFKADKVPDIDLNFAG 970

Query: 425  DRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPA 484
            D + +   Y++  +G +   +  T      K+A     +  ++                 
Sbjct: 971  DFQVQTHNYIRELFGEKFTFRAGTILGYAEKSAFSLAKKLNEI----------------- 1013

Query: 485  HPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL--SQL 542
                   +  +    E   +  S   L  ++ K  G+ +    H  GI++    L   + 
Sbjct: 1014 ----QTRLYLNEHPNEYEFSMYSNTFLDFLATKTSGVKKTTGQHPGGIIVILNDLEIEEF 1069

Query: 543  VPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL-------TLLQKSLDFLAQR 592
             P+     D  SD   T F+ + I    ++KFD LG            L    ++ + + 
Sbjct: 1070 TPINFPANDDNSDWKTTHFDFENIHD-NVLKFDLLGHDDPIMVRELEKLTNTKVENIPKS 1128

Query: 593  GVKVDLSLIPFDDHETYHLLTTKG---TLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
              K+       +                 G+ +  +S +R+ L   + +   D+I +  L
Sbjct: 1129 DPKIIKLFSSLEPLNIDSKDLPGEQNGARGLPEFGTSFVRRMLNTARVESFSDLIKVSGL 1188

Query: 650  YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
               G                 I   +  +  ++     +++Y   + +    L  +++ E
Sbjct: 1189 SH-GTNVWQDNAEAL------ISQHNLTLRDVISCRDDIMLYL--INKGVDSLVSFNIME 1239

Query: 710  ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
            +    +++  + ++ ++                       +    K   Y F K+HAAAY
Sbjct: 1240 SVRKGKSITVEQQQILENH----------------NVPIWYIESLKKIKYMFPKAHAAAY 1283

Query: 770  AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF------------------------ 805
             +++++  + K +YP+ F +   ++ +D                                
Sbjct: 1284 VLMAWRITYYKLYYPLAFYSVYFSIRIDFKNIDALLLPKQQLSSQIMALKQRENSKKEDK 1343

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKV-----------------GDNRIYYSLAAIKGVGTT 848
              +  +  I I+  +       F++                  +N +    +++ G+G  
Sbjct: 1344 LSEKEKKLIPILEVAEELKARGFEIEKINLNLSQATQWVINEENNSLIPPFSSLDGIGEA 1403

Query: 849  TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             A  I+ A  +K F S+EDF  R     +N  V++ L   G       +
Sbjct: 1404 NAAKIIAARTEKSFSSIEDFEKRA---GVNSTVIKKLKDMGVFKDLSET 1449



 Score = 69.0 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 31/91 (34%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L   +  S ++G  +  + +         AI I+D  ++ +  +F      A I+ I 
Sbjct: 317 VELFARTKMSTMDGVTNAQDYVKIAKLLGHSAIGISDLESVQAFPDFYFACKNAKIKAIY 376

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           G           K+ N  +         V+ 
Sbjct: 377 GSTFSTTHSKIFKVLNLRQNQDLEHARYVVF 407


>gi|312888221|ref|ZP_07747798.1| nucleic acid binding OB-fold tRNA/helicase-type [Mucilaginibacter
            paludis DSM 18603]
 gi|311299252|gb|EFQ76344.1| nucleic acid binding OB-fold tRNA/helicase-type [Mucilaginibacter
            paludis DSM 18603]
          Length = 253

 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 54/176 (30%), Gaps = 19/176 (10%)

Query: 857  SADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE 916
              D  +  +        S  +    LE L  A A    G  R   L  +  +        
Sbjct: 7    RKDG-YTHINQLR----SAGVPEAALEKLADADAFRSMGTDRRMALWEISAL-------- 53

Query: 917  KNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILR 976
                ++   +F  +      +  +    +         +    G     HP+ + +  L 
Sbjct: 54   ---ADRPVGLFDGQVSETVLEDAVP-LPLMTRGEHVVQDYISTGLSLKDHPVGLVRTQLN 109

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++      +      G++I LA ++  +Q+  T KG  + ++T  +         +
Sbjct: 110  RLYNVRISDLAKYKDGDSICLAGLITVRQRPGTAKG--VLFMTLEDETGSANVVVW 163


>gi|229220849|ref|YP_287921.2| DNA polymerase III PolC [Mycoplasma hyopneumoniae 7448]
 gi|144575503|gb|AAZ53898.2| DNA polymerase III alpha subunit [Mycoplasma hyopneumoniae 7448]
          Length = 1469

 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 142/919 (15%), Positives = 288/919 (31%), Gaps = 182/919 (19%)

Query: 98   SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSG-PID 156
             + ++     G ++L +LVS     +       I    LQ+     L++ +GG     I 
Sbjct: 607  QLTIIAKNQIGIKKLYKLVSLANTEN-LISRPLIFYDHLQKDP--DLLIGSGGPESLLIQ 663

Query: 157  RAFFFNSSQVAE-KRLLTFKKLFGDRLYVNLQRHRGY----DRYRESQVVQLAYTHELPL 211
               +F    VAE   +  F ++     +++L +   +           ++ LA   ++P 
Sbjct: 664  TMLYFGPKNVAEFAHIFDFIEIPPPIAFIHLVKREIFTKDQIEDMLKNLINLAKKLQIPA 723

Query: 212  VATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEA 270
            VA  +  +   ++   +++ + A     V       R       +N            E 
Sbjct: 724  VAIGDVRYCLPKEKIFYELYIYAKGVGGVNHVLFDHREKEREDFRNSHIFPEKHFFSTEE 783

Query: 271  LENTVEIARRCS-----------FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
            L+   E                 F+  +    +               E +L+       
Sbjct: 784  LKKEFEFLEDQQLIEEIVVKNSNFVADLIENNIQIIKSGLYPPSFDSSEVKLKEFVYKKA 843

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
              +         +  +    R+  EL  I    F   + I    +  AK     V   RG
Sbjct: 844  YEKYG------RFLPKLIENRIKTELEPIINQGFHVVYWISKHIVTEAKSQGAIVD-SRG 896

Query: 380  SGAGSVTAYALTITDIDPLR---------------------------------------- 399
            S   S+ A+   ITD++PL                                         
Sbjct: 897  SVGSSIVAFLTGITDVNPLLPHYWCKKCSKVEFPKSQQFLSGYDLPDKNCLDCYKKMDKD 956

Query: 400  -FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAAL 458
              ++ FE FL  +   +PD D++F    + ++  +V+  +G  +  +  T  +   K   
Sbjct: 957  GHNIPFETFLGFNVEKVPDIDLNFSGQTQLKMHDFVRTLFGINKTFRAGTILTNAEKTVY 1016

Query: 459  RDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKL 518
                +  +       R       D    VS                  +   L  ++ K 
Sbjct: 1017 GLARKLGEF------RARLDPKFDLNREVSYF----------------TSAFLDFLATKA 1054

Query: 519  EGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
            +G+ R +  HA GI  +  ++ +    P+     ++   + +     +   L   + L L
Sbjct: 1055 QGVKRTSGKHAGGIIVIPQNQEIEDFTPINYPANNEK--SDWKTTHFDYNALH-DNLLKL 1111

Query: 577  KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG---------------TLGIF 621
              L     ++    ++   +    IP  D +   L  +                 T+GI 
Sbjct: 1112 DILGHDDPTILLHLEKLTNIKSDEIPKSDPKILSLFRSCKELGISSDQILGEVTGTIGIP 1171

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            +  +  +R+ L+  Q     DI+A+  L   G              K  +      I+ +
Sbjct: 1172 EFGTQFVRKMLQIAQVKSFADIVAICGLAH-GTGVWQDNAEKLILEKNHV------INEL 1224

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
            +     ++IY   + +       +++ E     + +  + KE ++               
Sbjct: 1225 ISCRDDIMIYL--LEKNIDHKVAFNIMENVRKGKGLTDQEKELLEL-------------- 1268

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK 801
                  + +    +   Y F K+HA AYA+ +++ A+ K ++P+ F ++  ++  D  + 
Sbjct: 1269 --KKVPSWYIESLQKIGYLFPKAHAVAYAMKAWKIAYFKLYHPLAFYSSYFSIRPDVKDL 1326

Query: 802  IKKFC--------------------------QDARQFNIQIMPPSVNTPCVDFKV----- 830
                                               +  IQ +  S+      F++     
Sbjct: 1327 ETLIQPVEKIREKISILNKKRLESQKGIQQLSAKEKDLIQFLEISLELKSRGFEIEKVSL 1386

Query: 831  ------------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
                         +N +     AI G+G   AR I++A   +PF S+EDF  R ++   N
Sbjct: 1387 EKSEAQEWIINKENNSLIPPFIAIDGIGDVNARKIVQARNLRPFSSIEDFEKRTET---N 1443

Query: 879  RRVLESLVFAGALDCFGYS 897
               L+ L   G  D    S
Sbjct: 1444 STSLKKLKELGIFDKISKS 1462



 Score = 68.7 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%)

Query: 21  SLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
           S ++G  S    +     +   AI I D +++ +  EF     +  I+PI G    
Sbjct: 332 STMDGISSAKEYVQYALKNGYLAIGIADLDSVQAFPEFYNAIKSTNIKPIYGSTFS 387


>gi|58698588|ref|ZP_00373486.1| DNA polymerase III, alpha subunit, form 1, putative [Wolbachia
            endosymbiont of Drosophila ananassae]
 gi|58534884|gb|EAL58985.1| DNA polymerase III, alpha subunit, form 1, putative [Wolbachia
            endosymbiont of Drosophila ananassae]
          Length = 292

 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 79/170 (46%), Gaps = 11/170 (6%)

Query: 863  DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNK 922
              + +F        +N+R LESL+ +GA D    +R QL +S+D +  +A   +++R + 
Sbjct: 9    KDIWEFIQN-SGHIINKRALESLIKSGAFDSVHKNRKQLYESMDTLIYFANKNKQDRESS 67

Query: 923  HENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKG 982
               +F         K  LE     +   + E+E   LGFY + HPL+ ++ +L K+ I  
Sbjct: 68   QAALFGSLDVL---KPKLENVEDFDEEEKLEHELFSLGFYLTNHPLEKFRTLLEKLNIGF 124

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              E          + A ++++ + + + +G R   +T S+P    E  F+
Sbjct: 125  IGE------NRTAKTAGVILNARMRTSERG-RFVILTLSDPHNVSEIAFY 167


>gi|240047815|ref|YP_002961203.1| DNA polymerase III PolC [Mycoplasma conjunctivae HRC/581]
 gi|239985387|emb|CAT05400.1| DNA polymerase III alpha subunit [Mycoplasma conjunctivae]
          Length = 1455

 Score =  148 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 137/910 (15%), Positives = 289/910 (31%), Gaps = 183/910 (20%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA 158
              ++     G ++L +LVS     D       +    L++   E L++ +GG    +   
Sbjct: 598  FTIIAKNQAGIKKLYQLVSLSNT-DYLISKPLLFYDLLEK--DENLLIGSGGPESILIDN 654

Query: 159  FFFNSSQVAEKRLLTFKKL---FGDRLYVNLQRHRGYDRYR---ESQVVQLAYTHELPLV 212
              F++ + AEK +  F  +     +     ++R+     +       ++     ++ P+V
Sbjct: 655  LLFSTKENAEKFIPIFDFIELPPPEAFRHLIERNMFKKEHIFDLLKTLIAFGKKYKKPVV 714

Query: 213  ATNNSLFLSEEDYEAHDVLMAVAH---STVVSQKDRPRVTPDHYLKNRSEM-------VS 262
            A  +  ++  +    H++ +        +      R R           +        ++
Sbjct: 715  AIGDVRYVEPKQKIFHELYIYAKRVGGGSHNLFDHREREDYKKSHIFPDKYLFTTEELIN 774

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
             F+ L +       + +  + I       +               E +L+         +
Sbjct: 775  QFAFLEDEKLIKEIVIKNSNLISDQIDNNIEIIKPGLYKPKFDNSEYKLKEFVYENAHKK 834

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
              +         +   +R+  ELN I    F   + I    +  AK+    V   RGS  
Sbjct: 835  YGK------IIPEKIEKRIKRELNPIIEHGFHVIYWISKSLVHEAKRQGAIVD-SRGSVG 887

Query: 383  GSVTAYALTITDIDPLR-----------------------------------------FS 401
             S+ AY   ITD++PL                                           +
Sbjct: 888  SSIVAYLTGITDVNPLEPHYLCLSCQNVEFSDDPDILCGYDLPEKKCSKCGHILNRDGQN 947

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            + FE FL  +   +PD D++F  D + ++  YV++ +G +   +  T  +   K      
Sbjct: 948  IPFETFLGFEADKVPDIDLNFSSDIQLKMHDYVRDLFGDKNTFRAGTILTNAEKTVYGLA 1007

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
             +  ++  S   R              +  +                      + K  G+
Sbjct: 1008 RKLSEVKASLDKRFQSNQEISFFTTTFMDFL----------------------ATKANGV 1045

Query: 522  YRHASTHAAGIVIGD--RPLSQLVPMYRDVR---SDLPVTQFNMKWIEKAGLIKFDFLGL 576
             R +  HA GI++      +    P+        S    T F+   I        + L L
Sbjct: 1046 KRTSGKHAGGIIVIPEEYDIEDFTPINYPANNEKSGWKTTHFDYDSIHD------NLLKL 1099

Query: 577  KTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGT---------------LGIF 621
              L      +  L +    +    IP  D +   L  +                  +G+ 
Sbjct: 1100 DILGHDDPKILLLLEEITGIKSETIPKSDPQIIELFYSTKPLKIKPEQIGGELTGAIGLP 1159

Query: 622  QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
            +  +  +R+ L+  +     DI+A+  L   G                      PLI   
Sbjct: 1160 EFGTPFVRKMLQNARVKSFADIVAICGLSH-GKNVWQDNAE-------------PLIREQ 1205

Query: 682  LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGI 741
              + + VI  ++ +  I  +        A  +   + K    + ++++            
Sbjct: 1206 KLQIKDVISCRDDI-MIYLIKQNLDPLTAFNIMERVRKGKGVDEEQEQLMI--------- 1255

Query: 742  SKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT--LEMDNV 799
                  N +    K   Y F K+HAAAYA+ +++ A+ K +YP+ F +   T   ++ ++
Sbjct: 1256 -AKNVPNWYIDSLKKIGYMFPKAHAAAYAMKAWKIAFFKLYYPLAFYSVFFTIRPDVKDI 1314

Query: 800  EKIKKFCQDARQF---------------------NIQIMPPSVNTPCVDFKV-------- 830
            + +     +  +                       I  +  S+      F++        
Sbjct: 1315 DSLTLPHAEIDRKIKELRKKVNSSSTSVSAKEKDLIPFLEISLELKARGFEIEKINLEKS 1374

Query: 831  ---------GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                      +N +    ++++G+G   A +I++A ++K F S+EDF  R  +   N   
Sbjct: 1375 EAQQWIINYENNSLIPPFSSLEGIGDINASNIVKARSEKAFISIEDFEQRTGT---NSTA 1431

Query: 882  LESLVFAGAL 891
            ++ L   G  
Sbjct: 1432 IKKLEEMGVF 1441



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 32/91 (35%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L   +S S ++G  S    ++        AI I D++++ +  +F        I+ I 
Sbjct: 314 VELTARTSKSTMDGISSPKEYVEAAEQMGFTAIGIADSDSVQAFPDFFNALKGKSIKGIY 373

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           G           K+ N  K         V+ 
Sbjct: 374 GSTFSTVSSKIHKVLNYKKNFDLKSARYVVF 404


>gi|2956673|emb|CAA04471.1| DNA-polymeraseIII [Rhodobacter capsulatus]
          Length = 105

 Score =  147 bits (371), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 47/111 (42%), Positives = 68/111 (61%), Gaps = 6/111 (5%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +   P F+HL+VH+ YSLLEGA+ +  ++    A   PAIA+TDTN +F+ALEFS  A  
Sbjct: 1   MSD-PRFIHLRVHTEYSLLEGAVPVKKLIKLCDAMNMPAIAVTDTNAMFAALEFSVLAQG 59

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
           AG+QPI+GCQ+ +  +    +   G+ P    P +VLL     GY  L++L
Sbjct: 60  AGLQPIVGCQVSVAYE----VAAPGEKPRLPAP-VVLLAQNEAGYMNLMKL 105


>gi|293363994|ref|ZP_06610730.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            alligatoris A21JP2]
 gi|292552484|gb|EFF41258.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            alligatoris A21JP2]
          Length = 1432

 Score =  147 bits (371), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 139/854 (16%), Positives = 288/854 (33%), Gaps = 120/854 (14%)

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            ++     G ++L +LV++  L ++   S ++ L  L++   + L++ + G +G +    F
Sbjct: 597  IIAKNQIGLKKLFKLVTKT-LTERFFDSPKLFLEDLEK--DQDLLVGSAGLNGFLLNTLF 653

Query: 161  FNSSQVAEKRLL--TFKKLFG-DRL--YVNLQRHRGYD-RYRESQVVQLAYTHELPLVAT 214
            + S  V  + +    + ++        ++  +       +     ++ LA  H   ++A 
Sbjct: 654  YKSDLVLREYIKLYDYVEIPSISNFKHWIEYEDFTLEQIQDGLRYLINLALEHSKIVIAV 713

Query: 215  NNSLFLSEEDYEAHDVLM---AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-- 269
             +  ++ +    A+D+L+   A+        + R R       +       +  +     
Sbjct: 714  GDVRYIDKPGKAAYDLLIYAKAIGGDRHYLYEYRRRHNLKTPERFFLTTEQMLEEFEFLG 773

Query: 270  ---ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
               A +  V+     +  +     I       + DD       +L++        +  + 
Sbjct: 774  KELAYKIVVQNTNLIADSIDNIEVIKKDLYTPKFDDSH----EKLKDLVYKTAHKKYGE- 828

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
                    +    R+  E++ I +  +   + I    ++ + +N   VG  RGS   S+ 
Sbjct: 829  -----VLPEIIENRIKKEIDPILKYGYDVIYWISHKLVKKSVENGYLVG-SRGSVGSSLV 882

Query: 387  AYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE-RVAQ 445
            A    IT+++PL    + +     + +  P     F  D  D+      +    + +   
Sbjct: 883  ATLSGITEVNPLPPHYICQNCKYFELVESPITTSGFDLD--DKNCPKCNSILDKDGQTIP 940

Query: 446  IITFGSLQAKAA----LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD----SR 497
              TF   +A       L   G      +++V RL        A  +S  A          
Sbjct: 941  FETFLGFKADKVPDIDLNFSGEYQAQIHNEVKRLFGQNHTFRAGTISTAAYKTSFGYIKN 1000

Query: 498  FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMYRDVRS---D 552
              +      S + +  ++ ++EG+ R    H  GI+I  +        P+         D
Sbjct: 1001 AIDENGKHISDNFVDYLTTQIEGVKRTTGQHPGGILIIPKEFDVEDFCPINFPADDTSSD 1060

Query: 553  LPVTQFNMKWIEKAGLIKFDFLGLKTLT-----------LLQKSLDFLAQRGVKVDLSLI 601
               T F+ + I    ++K D LG    T            ++K +    ++ + +  S  
Sbjct: 1061 WKTTHFDFRAIHD-NVLKLDLLGHDDPTAIRMLEKLTGLNVKKDIPKKDEKVMSIFKSPK 1119

Query: 602  PFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
                  +       G LGI +  +  +R+ LE  +P    D+I+L  L          V+
Sbjct: 1120 ALGIEPSQIGNEQTGALGIPEFGTPFVRKMLEQSKPQHFSDLISLSGLSH-----GTDVW 1174

Query: 662  NNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI 721
             N             LI         VI  ++ +M       G    +A  +   + K  
Sbjct: 1175 LNNAQS---------LIMNEGLTIDKVISCRDDIMVYLIQN-GVESLDAFKIMEQVRKGQ 1224

Query: 722  KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              + D+++           + K    N +    K   Y F K+HA AY +++++ AW K 
Sbjct: 1225 GIKPDQEEM----------LKKIGIKNWYIESMKKIKYMFPKAHATAYVLMAWRIAWFKV 1274

Query: 782  HYPVEFLAASMTLEMDNVE------------------------------------KIKKF 805
            + P+E+ A   T   D  +                                     + + 
Sbjct: 1275 YKPLEYYATYFTTRCDVFDIESMANDVNLAKINNKISEINNKSNNERSVKENNLIPVLEI 1334

Query: 806  CQDARQFNIQIMPPSVNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
             ++       I   SV+    +  +       +  S + + G+G   A  I  A  ++PF
Sbjct: 1335 ARELYARGFSISSISVHESLENEWIINREKKCLIPSFSTMDGLGINIAETITAARKERPF 1394

Query: 863  DSLEDFCSRVDSKK 876
             S EDF  R    K
Sbjct: 1395 TSKEDFFKRTSITK 1408



 Score = 71.0 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%)

Query: 23  LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82
           ++G L+   I+ K       A+A+ D+N++    EF   A   GI+PI+G       + +
Sbjct: 325 MDGILNPAQIIKKAKELNHKAVALLDSNSVQGFPEFYSSALKQGIKPILGTTFSAINKSH 384

Query: 83  LKMTN 87
             + N
Sbjct: 385 QAVLN 389


>gi|71894029|ref|YP_278137.1| DNA polymerase III PolC [Mycoplasma synoviae 53]
 gi|71850817|gb|AAZ43426.1| DNA polymerase III alpha subunit [Mycoplasma synoviae 53]
          Length = 1451

 Score =  147 bits (371), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 120/890 (13%), Positives = 276/890 (31%), Gaps = 174/890 (19%)

Query: 103  VSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFN 162
            V    G + L +LVS          + +I  S L+    + +++ + G  G +      +
Sbjct: 610  VKNQAGLKELFQLVSIANTKT-FYGAPKIFWSTLKSF--KNILVGSNGVQGELFDILLLS 666

Query: 163  SSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQ-------------VVQLAYTHEL 209
            S Q  EK +           Y+ +     +D Y +               ++ LA  H  
Sbjct: 667  SRQRVEKYIQKLD-------YIEIPHPDLFDSYLDRNQLTKDQLLESLQILISLAKKHNK 719

Query: 210  PLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE 269
             +++T    +  + D E   VL +             +          +       ++ +
Sbjct: 720  LIISTAEPRYRHKGDREIFKVLTSFPIRDKRHFLWNYKAVKAGNYSVPNFYFLTTDEMLD 779

Query: 270  ALENTVE-------IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
            A     +       +      +  +    +            K     L++      + +
Sbjct: 780  AFSFLKDKSLIEDIVVNNAHKLNNLIDENIEVIKTDLYPPSIKNSSELLKDLVYKNAKKK 839

Query: 323  LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
              +         +  + R+D EL  I   KF   + I    ++ A  +   VG  RGS  
Sbjct: 840  YGE------VLPKLVQDRIDKELIPIINYKFDVVYWISHILVKKANDDGYVVG-SRGSVG 892

Query: 383  GSVTAYALTITDIDPLR-----------------------------------------FS 401
             S+ A  + IT+++PL                                           S
Sbjct: 893  SSLIANLINITEVNPLEPHYICDNCKHFEVVNNDKITSGYDLDDKNCPNCDSIMDKDGHS 952

Query: 402  LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
            + FE FL      +PD D++F  + +  +  Y +  +G ++  +  T  S+Q + A   +
Sbjct: 953  IPFETFLGFKADKVPDIDLNFSGEYQIAIHNYTRELFGEDKTFRAGTVSSIQYRKAFGFI 1012

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
             + ++   +                                        +  +++K   +
Sbjct: 1013 KKYIEDTNTFYSNG----------------------------------FIDYLAEKCIDV 1038

Query: 522  YRHASTHAAGIVIGDRPLS--QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTL 579
                  HA GIV+    L   +  P+       L   ++      K   +K + L L  L
Sbjct: 1039 KVTTGKHAGGIVVLPENLDIEEFTPVNYAS-DGLEDKEWKTTHF-KYDFLKENLLKLDLL 1096

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
                 +     ++   +    IP  D     L ++   + I   + +G       +    
Sbjct: 1097 GHSDPTQIRFLEQATGLLSKNIPKKDKNLLKLFSSTEPMEIDPNDINGETTGAIALPEFG 1156

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
             +    ++   +P    +++  +   +G+    +    +     +T   I+     +   
Sbjct: 1157 TKFTREIIKTSKPHLFADLISISGLSHGQNVWKNNAEDLILNENKTLNEIVCCRDDIMNY 1216

Query: 700  QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
             +  G   S +  +  ++ K    + +    + +S  +           I         Y
Sbjct: 1217 LIKKGVDASLSFKVTESVRKGKGVDSEDI--KILSTYNIPDWFFDSMQKI--------KY 1266

Query: 760  GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE-------------KIKKFC 806
             F ++HA AY +++++  + K +YP+EF A+  +++    +             KIK   
Sbjct: 1267 MFPRAHAVAYVIMAWRMGYYKLYYPLEFYASFFSVKCSKFDLSAMIDFSKDGYWKIKNKI 1326

Query: 807  QDARQFNI--------------QIMPPSVNTPCVDFKVGD-----------------NRI 835
            ++  +                 + +  ++      F + +                   +
Sbjct: 1327 EEIEKLIRTNNKKDNKKEEDILESLNVALEMYSRGFTIQNIDIEKSDAYNWIIDKDSKSL 1386

Query: 836  YYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
                +A+ G+     + I+ A  ++PF ++ DF  R     ++  ++E L
Sbjct: 1387 IPPFSALDGIEAGAIK-IINARKERPFKTVLDFAKR---SGVSSTIVEKL 1432



 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 33/80 (41%)

Query: 23  LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82
           L+G L+   I+ +       A+ I+D N++FS  EF   A A  I+PI G    +    N
Sbjct: 335 LDGLLTPEEIVAEAKRQGHSAVGISDYNSIFSFPEFYYAAKANNIKPIYGAGFAMLEDTN 394

Query: 83  LKMTNQGKTPFPTVPSIVLL 102
                + +         V+ 
Sbjct: 395 GAFLTEFQNQDLITGRYVVF 414


>gi|487436|gb|AAA18178.1| DNA polymerase III [Mycoplasma pulmonis]
 gi|1090178|prf||2018296A DNA polymerase III
          Length = 1435

 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 133/881 (15%), Positives = 289/881 (32%), Gaps = 142/881 (16%)

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            ++     G + L ++ S + L      + ++    ++   ++ L++ +GG + P+     
Sbjct: 599  IIAKNQAGLKELFKINSDV-LTKYYFANPKMFWEDIKR--SKNLLIGSGGLNSPLIDKLL 655

Query: 161  FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY---------DRYR---ESQVVQLAYTHE 208
            F++ +     +  +        Y+ +     +         D+       ++++ A    
Sbjct: 656  FSTQEDVLNEIDKYD-------YIEIPSPNNFSHFWTTKFSDQQIKIQLQKLIKWAKEKN 708

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS--- 265
              +VA     +  +     H++ +                             +      
Sbjct: 709  KIIVAIGEPRYNEKWQKIIHEIYINSTGIENSLHPLFIIKKDMDTFYPEQIYKTTNEMKQ 768

Query: 266  -----DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
                   PE +E  V  +   S  ++    I  +    + DD       +L+        
Sbjct: 769  EFSFLYDPELIEEIVVKSNLISSQIEKIQVIKDKLYTPKFDDSHI----KLKKLVYENAW 824

Query: 321  VRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
             +  +         +   QR++ EL  I    F   + I +  +Q +  +   VG  RGS
Sbjct: 825  KKYGKNL------PEIIEQRIEKELTPILNYGFDVIYWISSILVQKSLSDGYLVG-SRGS 877

Query: 381  GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
               S+ A    IT+++PL    +  +    + +  P  +  F  D  D+      +    
Sbjct: 878  IGSSLVATLSGITEVNPLAPHYICSKCQYFELVKDPMTNSGFDLD--DKKCPKCNSFLDK 935

Query: 441  E-RVAQIITFGSLQAKAA----LRDVGRALQMPYSQVDRLCKLIPNDPAHPVS----LQA 491
            + +     TF   +A       L   G      + +V RL        A  +S      A
Sbjct: 936  DGQTIPFETFLGFKADKVPDIDLNFSGEYQGKIHDEVKRLFGSKHTFRAGTISTVAEKTA 995

Query: 492  IADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMY--- 546
                 ++ E    D S + +  +++K  G+ R    H  GI+I  +        P+    
Sbjct: 996  YGYIKKYLETASLDYSDNFVDFLTEKSTGVKRTTGQHPGGIIIIPKEFDVEDFTPVNFPA 1055

Query: 547  RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVDL 598
             D  S    T F+   I    ++K D LG    T L+               +    + +
Sbjct: 1056 NDTESSWKTTHFDFHAIHD-NVLKLDILGHDDPTALKMLEKLTGVNVKDIPKKDEKIISI 1114

Query: 599  SLIPFDDHETYHLLTTKGTL--GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
               P     +   +  + T   GI +  ++ +RQ L   +P    D++++  L       
Sbjct: 1115 FTSPKALGISSEEILGEKTGALGIPEFGTNFVRQMLSEAKPKTFADLVSISGLSH----- 1169

Query: 657  NIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRA 716
               V+ N  +       I   +   L +   VI  ++ +  +  +  G  +  +  +   
Sbjct: 1170 GTDVWINNAH------YIIQSLGKTLDQ---VISCRDDI-MVDLIKKGVPIDLSFTIMEQ 1219

Query: 717  MGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQT 776
            + K     ++++KE+ I    +N   +++             Y F K+HA AY +++++ 
Sbjct: 1220 VRKGKGLSLEQKKEKLIEHGIENWYIESMEKI---------KYMFPKAHATAYVLMAWRV 1270

Query: 777  AWMKTHYPVEFLAASMTLEMDNVE------------------------------------ 800
            A+ K +YP+E+ A   +   +  +                                    
Sbjct: 1271 AFYKVYYPLEYYATYFSTRTEFFDIEIMSKDKLTLESKIKELAYRENLRNDNQLTTKEKN 1330

Query: 801  --KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR---IYYSLAAIKGVGTTTARHIME 855
                     + +     I   ++     +  + D     +      I G+G T A+ I++
Sbjct: 1331 TLPTLYIANEMKARGFNIQNINLKISLANDWIIDKNSKSLIPPFNVIDGLGETLAQKIVD 1390

Query: 856  ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            +  +K F S+EDF +R     +N  ++E           G 
Sbjct: 1391 SRNEKEFLSVEDFINRT---GINSTLVEK------FKSMGI 1422



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 1/86 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-CAAGIQPI 70
           + L   S  S ++G LS  +I+ +       +IAI D N++ +  +F          + I
Sbjct: 312 IELSFRSKMSTMDGILSPLDIVKQAKKFNHSSIAILDHNSVQAFPDFHNLTYKDKDFKVI 371

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTV 96
            G  L +  + N       K  F   
Sbjct: 372 YGMTLSVISKRNKIFVEPLKDKFFDY 397


>gi|15829146|ref|NP_326506.1| DNA polymerase III PolC [Mycoplasma pulmonis UAB CTIP]
 gi|14424449|sp|P47729|DPO3_MYCPU RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|14090090|emb|CAC13848.1| DNA POLYMERASE III, ALPHA CHAIN POLC-TYPE (POLIII) [Mycoplasma
            pulmonis]
          Length = 1435

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 133/882 (15%), Positives = 285/882 (32%), Gaps = 144/882 (16%)

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            ++     G + L ++ S + L      + ++    ++   ++ L++ +GG + P+     
Sbjct: 599  IIAKNQAGLKELFKINSDV-LTKYYFANPKMFWEDIKR--SKNLLIGSGGLNSPLIDKLL 655

Query: 161  FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY---------DRYR---ESQVVQLAYTHE 208
            F++ +     +  +        Y+ +     +         D+       ++++ A    
Sbjct: 656  FSTQEDVLNEIDKYD-------YIEIPSPNNFSHFWTTKFSDQQIKIQLQKLIKWAKEKN 708

Query: 209  LPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMV------- 261
              +VA     +  +     H++ +                                    
Sbjct: 709  KIIVAIGEPRYNEKWQKIIHEIYINSTGIENSLHPLFIIKKDMDTFYPEQIYKTTNEMKQ 768

Query: 262  --SIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
              S   D     E  V+     S  ++    I  +    + DD       +L+       
Sbjct: 769  EFSFLYDPELIEEIVVKNPNLISSQIEKIQVIKDKLYTPKFDDSHI----KLKKLVYENA 824

Query: 320  EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
              +  +         +   QR++ EL  I    F   + I +  +Q +  +   VG  RG
Sbjct: 825  WKKYGKNL------PEIIEQRIEKELTPILNYGFDVIYWISSILVQKSLSDGYLVG-SRG 877

Query: 380  SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
            S   S+ A    IT+++PL    +  +    + +  P  +  F  D  D+      +   
Sbjct: 878  SIGSSLVATLSGITEVNPLAPHYICSKCQYFELVKDPMTNSGFDLD--DKKCPKCNSFLD 935

Query: 440  HE-RVAQIITFGSLQAKAA----LRDVGRALQMPYSQVDRLCKLIPNDPAHPVS----LQ 490
             + +     TF   +A       L   G      + +V RL        A  +S      
Sbjct: 936  KDGQTIPFETFLGFKADKVPDIDLNFSGEYQGKIHDEVKRLFGSKHTFRAGTISTVAEKT 995

Query: 491  AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS--QLVPMY-- 546
            A     ++ E    D S + +  +++K  G+ R    H  GI+I  +        P+   
Sbjct: 996  AYGYIKKYLETASLDYSDNFVDFLTEKSTGVKRTTGQHPGGIIIIPKEFDVEDFTPVNFP 1055

Query: 547  -RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL--------AQRGVKVD 597
              D  S    T F+   I    ++K D LG    T L+               +    + 
Sbjct: 1056 ANDTESSWKTTHFDFHAIHD-NVLKLDILGHDDPTALKMLEKLTGVNVKDIPKKDEKIIS 1114

Query: 598  LSLIPFDDHETYHLLTTKGTL--GIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            +   P     +   +  + T   GI +  ++ +RQ L   +P    D++++  L      
Sbjct: 1115 IFTSPKALGISSEEILGEKTGALGIPEFGTNFVRQMLSEAKPKTFADLVSISGLSH---- 1170

Query: 656  DNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
                V+ N  +       I   +   L +   VI  ++ +  +  +  G  +  +  +  
Sbjct: 1171 -GTDVWINNAH------YIIQSLGKTLDQ---VISCRDDI-MVDLIKKGVPIDLSFTIME 1219

Query: 716  AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
             + K     ++++++    G         I     E + K   Y F K+HA AY +++++
Sbjct: 1220 QVRKGKGLSLEQKRKLIEHG---------IENWYIESMEKI-KYMFPKAHATAYVLMAWR 1269

Query: 776  TAWMKTHYPVEFLAASMTLEMDNVE----------------------------------- 800
             A+ K +YP+E+ A   +   +  +                                   
Sbjct: 1270 VAFYKVYYPLEYYATYFSTRTEFFDIEIMSKDKLTLESKIKELAYRENLRNDNQLTTKEK 1329

Query: 801  ---KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR---IYYSLAAIKGVGTTTARHIM 854
                      + +     I   ++     +  + D     +      I G+G T A+ I+
Sbjct: 1330 NTLPTLYIANEMKARGFNIQNINLKISLANDWIIDKNSKSLIPPFNVIDGLGETLAQKIV 1389

Query: 855  EASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
            ++  +K F S+EDF +R     +N  ++E           G 
Sbjct: 1390 DSRNEKEFLSVEDFINRT---GINSTLVEK------FKSMGI 1422



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 1/86 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-CAAGIQPI 70
           + L   S  S ++G LS  +I+ +       +IAI D N++ +  +F          + I
Sbjct: 312 IELSFRSKMSTMDGILSPLDIVKQAKKFNHSSIAILDHNSVQAFPDFHNLTYKDKDFKVI 371

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTV 96
            G  L +  + N       K  F   
Sbjct: 372 YGMTLSVISKRNKIFVEPLKDKFFDY 397


>gi|183508608|ref|ZP_02958116.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 14 str. ATCC 33697]
 gi|182676065|gb|EDT87970.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 14 str. ATCC 33697]
          Length = 1442

 Score =  146 bits (369), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 159/980 (16%), Positives = 306/980 (31%), Gaps = 206/980 (21%)

Query: 30   NNILDKIAADQQPAIAITDT-----NNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLK 84
            + I  +       AI +TD      NNLF                       I   + + 
Sbjct: 551  DEIAHRA---DYDAIVLTDVFKVMKNNLF-------------------NDFGITNLNEIN 588

Query: 85   MTNQGKTPFPTVPS--IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142
               Q            I L +      + + ELVS  +  D       I   +L     +
Sbjct: 589  TKLQTTMLRNRSFGNWINLYIKNQANVKDMYELVSISHT-DMYYTRPTITTGFLANK-KD 646

Query: 143  GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL-FGDRLYVNLQRHR--------GYD 193
             LI+        +  A +  + +  ++ +  +  +       +  Q+H            
Sbjct: 647  KLIISNSIHESDLINALYSKNDEEIKRLIQRYDFITLPS---LGSQKHLVYAKKITIENV 703

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +    +++ LA      ++ +++  +  ++D + +DV +    +T   +    R   + Y
Sbjct: 704  QKAFKKLIYLALELNKIIIYSSSPYYFFKDDKKFYDVYV----NTKGLEGKAHRFANEVY 759

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            + +   +    +    A     ++         VH         +         + E  +
Sbjct: 760  VPDLEYIDQKNAIDELAYLEDEKLINLIINENPVHINSWFDDSIQPLKKGLYAPKMEGVD 819

Query: 314  KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            +      V      I          QR+  ELN I +  FS  + I    ++ + ++   
Sbjct: 820  QKTI-DYVYHTAKKIYGENLPTIVEQRIKKELNSIIKHGFSVVYWISHLLVEKSMQDGYG 878

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLR---------------------------------- 399
            VG  RGS   S+ A  L ITD++PL                                   
Sbjct: 879  VG-SRGSVGSSLVATFLNITDVNPLTPHYLCPNCKKCEFITNADDGFDLAPKSCEQCQTP 937

Query: 400  -----FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                  ++ FE FL  D   +PD D++F    +     ++++ +G     +  T G++  
Sbjct: 938  MLTDGHNIPFETFLGFDGDKVPDIDLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAQ 997

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
             +A   V +  +  +S+   +                                   +   
Sbjct: 998  TSAENTVKKYFENRFSENKIIRDST-------------------------------VSLY 1026

Query: 515  SQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLI 569
             QK     R    H  GI+I      +    P      D+      T F  +++    L+
Sbjct: 1027 VQKCIDSKRTTGQHPGGIIIVPKEYSIWDFSPYNFPANDINETWKTTHFAFEYLHD-SLL 1085

Query: 570  KFDFLGLKTLTLLQ----------KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
            KFD LG    T+L+          + +       +K    +   +   +  L  T G + 
Sbjct: 1086 KFDILGHDNPTILKLLKDYTGIDERDVPMYDPLVMKSFSDISALNIKPSDVLNETTGAIS 1145

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            I +  +  +R  L   +P    D+I +  L     +      +               + 
Sbjct: 1146 IPEFGTRFVRGMLVDTKPKSFADLIRISGLSHGESVWLGNAQS---------------LI 1190

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
               K  + VI  ++ +M             A ++   + K  K + + Q           
Sbjct: 1191 KSGKLLKDVIACRDDIMTYLIR-QNVEPKTAFLIMEDVRKGKKIKPEHQII--------- 1240

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
             + +      +   A    Y F K+HA AY + +++ AW K +YP+E+ AA  ++  DN 
Sbjct: 1241 -LKELKVPEWYIESANKIKYMFPKAHATAYVMHAWKFAWYKIYYPLEYYAAFFSVRADNF 1299

Query: 800  E---------------------------------------KIKKFCQDARQFNIQIMPPS 820
            +                                        I +   +      +I   S
Sbjct: 1300 DLFVINQGKEFIEKTYNDIEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNIS 1359

Query: 821  VNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            +        V    +N I     AI+G+G T A  I+EA   K F ++ED  +R    K+
Sbjct: 1360 IEQSQATSYVIDKENNAIIPPFIAIQGLGETVANSIIEARNQKVFSTIEDLKNRT---KI 1416

Query: 878  NRRVLESLVFAGALDCFGYS 897
            +R  L++L   G LD    +
Sbjct: 1417 SRTDLKNLRALGVLDHLSET 1436



 Score = 55.6 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  H+  S L+  +S   ++D    +Q   I ITD N + +  E ++ +    ++ I G
Sbjct: 324 ELNFHTKMSSLDAIISTQELIDFAVKNQLKTIGITDRNVVQAYPEIAKFSKKQDLKIIYG 383

Query: 73  CQ 74
            +
Sbjct: 384 LE 385


>gi|157283913|ref|YP_001468181.1| DNA polymerase III, alpha subunit [Kineococcus radiotolerans
           SRS30216]
 gi|151363055|gb|ABS06057.1| DNA polymerase III, alpha subunit [Kineococcus radiotolerans
           SRS30216]
          Length = 1280

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 129/659 (19%), Positives = 234/659 (35%), Gaps = 96/659 (14%)

Query: 8   SPSFVHLQVHSSYSLLEGALSL-----------------NNILDKIAADQQPAIAITDTN 50
           S  F HL V S +S   G                                      TD  
Sbjct: 2   STPFTHLHVASGHSHHHGTTDPATLAAAAASAGASALAL-----------------TDRG 44

Query: 51  NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP------FPTVPSIVLLVS 104
            +   ++       AGI PI G  L +        T   K              +V+L  
Sbjct: 45  QMAGLIQHVSACRFAGIDPIAGVDLALHSSTRRDSTRTSKPGTTGSGFSAGSGRVVVLAH 104

Query: 105 TAE---GYQRLIELVSRMYLLD----QGKQSVRICLSWL------QEIGTEGLIMLTGGS 151
                 G+  L    +  +  +        +  +  + L               +L G  
Sbjct: 105 GHTHGAGWAALCRATTAAHRTNTTPSASAATASLTPADLVAALAPAAGNDPAATVLLG-P 163

Query: 152 SGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGYDRY-----RESQVVQLAY 205
              + RA      +        + +L     L V +  H   + +       ++V++ A 
Sbjct: 164 GTDLGRALATGRMREVIDAWEAWTRLLPASALAVEVVCHLTREGHPASVGVTARVLRAAA 223

Query: 206 THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV---VSQKDRPRVTPDHYLKNRSEMVS 262
              +P V +N    L   D    DV  AVA       +            +LK    M  
Sbjct: 224 AVGIPTVLSNAVRLLHPGDVPTADVGDAVAALRGLEELHAAHALSPNAQAWLKPPHLMED 283

Query: 263 IFSDLPEALENTVEIARRCSFILQ-------------VHAPILPRFIEKECDDIQKEEEN 309
           +  ++  A             +L+                    R    E   +  +   
Sbjct: 284 LAREIATAAGVEHRGRDHAGGLLERTAALAERCRLDLERDLGWGRARVPEPAVLGIDAAA 343

Query: 310 --------------ELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
                          LR +A AG+  R    ++A     +  ++R+  EL V+ R+ ++ 
Sbjct: 344 TSAGDPHGYAAALGMLRARADAGIGRRHPGASLA---KVRAVQERVQAELAVVDRLNYAT 400

Query: 356 YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
           YFL V++  +      +     RGSG GSV  + L ++++DPL   LLFERF++  R ++
Sbjct: 401 YFLAVSEATRLIHGLGVR-ATARGSGVGSVLLWLLGVSNVDPLDQGLLFERFISDRRETL 459

Query: 416 PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
           PD D+D    RR ++ R +++++G ERV  + T  + +A+ A+R  G AL +    VD +
Sbjct: 460 PDIDLDVESARRHDIYRAIRDRFGAERVTLMATTQAYRARGAVRAAGLALGVEPEVVDEV 519

Query: 476 CKLIPNDPAHPVS--LQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
              +    A  V   +  + +     E   +   +D L++++  L+ L RH S H  G++
Sbjct: 520 AASLRGVSASRVREAMAELPELRELAELVRSHRQLDLLVDVTATLDRLPRHLSMHPCGVI 579

Query: 534 IGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
           + D  L    P+       + ++QF+   I+  G +K D LG++  + +  +L  + + 
Sbjct: 580 LSDASLLTRTPVQACGIEGMAMSQFDKDDIDPMGWLKLDVLGVRMQSAIAYTLTEIERT 638



 Score =  124 bits (311), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 94/316 (29%), Positives = 151/316 (47%), Gaps = 28/316 (8%)

Query: 598  LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            L  I  DDH T+ L+ +  TLG+FQ+ES G R+ L   QP    D++  V+L+RPGP+  
Sbjct: 705  LDAIALDDHATFELIRSTHTLGVFQIESPGQRELLGKFQPRAFSDLVIDVALFRPGPMAG 764

Query: 658  IVVYNNRKNGKEKIVS------IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
             ++    +     + +       HP + P+L ET GV+I+ EQVM+I  + +G  L+ AD
Sbjct: 765  DMISPFLEGHHGWVATGGPRRLPHPDLTPILSETHGVVIFHEQVMRILDVFTGCGLARAD 824

Query: 712  VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            V RR +         + +  F + A+  G  + +   +++L+A    +GF ++HAAA+A 
Sbjct: 825  VWRRHLSDPDARV--EVEADFRTAATARGYPRDVVDAVWKLIAAHGGFGFARAHAAAFAA 882

Query: 772  ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
            I+YQ+AW+K HYPV+FL   +  +       +    +AR+  I I+P  V T    ++  
Sbjct: 883  ITYQSAWLKAHYPVQFLTGLLEHDPGM-YPRRLLVAEARRLGIAILPVDVQTSTDVWRAE 941

Query: 832  -------------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN 878
                            I   L  +K +       I+     +PF  + DF  R   +   
Sbjct: 942  LPAPTGQSAGGERRWGIRPPLTVVKDLHAAEVERIVAT---QPFADVGDFRDRARPR--- 995

Query: 879  RRVLESLVFAGALDCF 894
            R  L  L   GALD  
Sbjct: 996  RPTLIRLARLGALDDL 1011



 Score = 92.9 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 34/112 (30%), Gaps = 5/112 (4%)

Query: 922  KHENI-FAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                +         +    L          +   E    G     H L  + P LR+ G 
Sbjct: 1130 GQLVLPLGDLDLASAPAGHLAPTPE----QQVSTELASTGMDLQQHILTPHLPELRRRGF 1185

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               E  +      ++ +A + V+ Q    R G R+ ++T  +     +   F
Sbjct: 1186 TPAERLLEVRTDVDVLVAGVRVATQTPPVRSGRRVVFLTLDDGTGCVDVTVF 1237


>gi|330901815|gb|EGH33234.1| error-prone DNA polymerase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 377

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 116/387 (29%), Positives = 189/387 (48%), Gaps = 18/387 (4%)

Query: 243 KDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
                   + +L+    +   + D   A   +V IARRC+F L       P  +  +   
Sbjct: 6   GHLLFANGERHLRPLDALSEHYPDWLLA--ESVRIARRCTFDLGDLKYEYPHELVPKG-- 61

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
             +   + LR     G+  R   G           R +++ EL +IA  KF  YFL V D
Sbjct: 62  --QTSTSWLRELTERGVRRRWPGGL------TPATRAQVEKELALIAEKKFDSYFLTVHD 113

Query: 363 FIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDF 422
            +++A+  +I    GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF
Sbjct: 114 IVEFARSQHIL-CQGRGSAANSAVCYALGITELNPEQSNLLFERFISRERNEPPDIDVDF 172

Query: 423 CQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPND 482
             DRR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L +     
Sbjct: 173 EHDRREEVIQYIFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPPDQINALAEAFSRW 232

Query: 483 PAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQL 542
                S + + +           P + R+L ++ +L G  RH S H  G VI + PL  L
Sbjct: 233 SDSLPSPERLREY----GFDADTPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETL 288

Query: 543 VPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLI 601
           VP+     +D  + Q++   ++  GL+K D L L  L+ L+++ D +   R  +  L+ +
Sbjct: 289 VPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRDQRWTLASL 348

Query: 602 PFDDHETYHLLTTKGTLGIFQLESSGM 628
           P DD +TY +++   T+G+FQ+ES   
Sbjct: 349 PGDDRKTYEMISRADTVGVFQIESRAQ 375


>gi|294155324|ref|YP_003559708.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli
            MP145]
 gi|291600469|gb|ADE19965.1| DNA polymerase III, polC-type alpha subunit [Mycoplasma crocodyli
            MP145]
          Length = 1447

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 142/908 (15%), Positives = 288/908 (31%), Gaps = 138/908 (15%)

Query: 73   CQLDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
             +++I+    L+     +  F      V ++    +G + L   VS   L ++     +I
Sbjct: 583  AEININTIVELRDYKSNQLYFKKFSDDVSVIALNQKGLKELFNFVSLS-LTERMYNQPKI 641

Query: 132  CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL-------FGDRLYV 184
                ++   ++ +++ +   +G +  A FF +       +  F  +       F    ++
Sbjct: 642  FFEDIKR--SKNILVGSSTLNGLVINALFFKNDTELRNYIEKFDYIEIPCLSNFKH--WI 697

Query: 185  NLQRHRGYD-RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM-AVAHSTVVSQ 242
                 +  D +     +V+ A   +  +VA  +  +++E +  A+ +L+ A A       
Sbjct: 698  EYGDFKEEDIKNALKYLVKTAKEMKKIVVAVGDVRYINETEKTAYSLLVYAKAIGGDRHY 757

Query: 243  KDRPRVTPDHYLKNRSEMVSIFS-------DLPEALENTVEIARRCSFILQVHAPILPRF 295
                +   D  L  R  + +          +   A E  VE     +  +     I    
Sbjct: 758  LFDYKRKHDLKLPERFYLTTEQMIEEFSFLEDKLAYEIVVENTNLITDKINEIEVIKKDL 817

Query: 296  IEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSG 355
               + DD       +L++        +  +         +    R+  E+N I +  +  
Sbjct: 818  YTPKFDDSPT----KLKDLVYKTAREKYGE------KLPEIVENRIKKEINPILKYGYDV 867

Query: 356  YFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSM 415
             + I    ++ +  N   VG  RGS   S+ A    IT+++PL    +  +    + +  
Sbjct: 868  IYWISHKLVKKSIDNGYLVG-SRGSVGSSLVATLSGITEVNPLPPHFVCPKCKKFELIDN 926

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL--------------QAKAALRDV 461
                  F  D ++      + K   ++  Q I F +                +     ++
Sbjct: 927  LKISSGFDLDDKE----CEKCKITMDKDGQTIPFETFLGFEADKVPDIDLNFSGDYQGEI 982

Query: 462  GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
               ++  + +            A   S   I +       +++   VD L  I + +   
Sbjct: 983  HNEIRRLFGENHTFRAGTIATAASKTSYGYIKNALDESGKKISSTFVDYLTSIIEGV--- 1039

Query: 522  YRHASTHAAGIVIGD--RPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
             R    H  GI+I      +    P+     DV SD   T F+   I    ++K D LG 
Sbjct: 1040 KRGTGQHPGGIIIIPKEYSVEDFTPINFPGNDVESDWKTTHFDFHAIHD-NVLKLDILGH 1098

Query: 577  KTLTLLQKSLDFL-----------AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
               T ++                  ++ + +  S      + +       G LGI +  +
Sbjct: 1099 DDPTAIKMLERLTGVDVKKDIPKKDKKVMSIFTSPAALGINSSQIGGEPTGALGIPEFGT 1158

Query: 626  SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKET 685
              +R+ LE  +     D+I+L  L          V+ N              +      T
Sbjct: 1159 PFVRKMLEQAKAKSFADLISLSGLSH-----GTDVWLNNAQ----------SLIKEKGHT 1203

Query: 686  QGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTI 745
               +I     + +  +  G     A  +   + K      +++            + K  
Sbjct: 1204 IDQVISCRDDIMVYLIKHGVDSLYAFKIMEQVRKGKGITEEQE----------QDLRKNK 1253

Query: 746  AVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
                +    K   Y F K+HA AY +++++ AW K + P+E+ A   T   D  +     
Sbjct: 1254 IPQWYIDSMKKIKYMFPKAHATAYVLMAWRIAWFKVYKPLEYYATFFTTRCDVFDVANMC 1313

Query: 806  -------------------CQDARQFNIQIMPPSVNTP---CVDFKVG------------ 831
                                 +       ++P            F +             
Sbjct: 1314 EDFKITKINNRIAEINSKPINEISAKEANLIPVLEIARELYARGFTISKISITKSLEKEW 1373

Query: 832  -----DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                 +  I    +A+  +G +TA  I +A  +KPF S EDF +R    K      E L 
Sbjct: 1374 VIDYQNKTIIPPFSALDSLGDSTAYSITQARKEKPFISKEDFANRTSVSKTQYAEFEKL- 1432

Query: 887  FAGALDCF 894
              G     
Sbjct: 1433 --GVFKEL 1438



 Score = 85.6 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 12/186 (6%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L   S  + ++G L+   +++K       A+A+ D+N++    +F   A  A I+PI+
Sbjct: 329 VELNTKSKMNTMDGILTPIQLINKAKELGHRAVALLDSNSVQGFPDFYNAAKKAKIKPIL 388

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG----YQRLIELVSRMYLLDQGKQ 127
           G       Q N  ++N  K         V       G    Y  LIE     +     K 
Sbjct: 389 GATFSTIPQSNNSVSNFQKDGILKEQEYVCFDIETTGLSPRYHELIE-----FGATIIKN 443

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              I            L   T   +G  D+       +  +  LL   KLF +R  + + 
Sbjct: 444 GSVISREQFFIKAKNSLSAFTINLTGITDQMLKNEGLE-LKPALLKISKLFENR--IAVA 500

Query: 188 RHRGYD 193
            +  +D
Sbjct: 501 HNSTFD 506


>gi|330880634|gb|EGH14783.1| error-prone DNA polymerase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 305

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 92/290 (31%), Positives = 148/290 (51%), Gaps = 11/290 (3%)

Query: 590 AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
             RG +  L+ +P DD ETY +++   T+G+FQ+ES      L  ++P+   D++  V++
Sbjct: 12  LHRGKRWTLADLPGDDRETYEMISRADTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAI 71

Query: 650 YRPGPIDNIVVYNN-RKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLS 708
            RPGPI   +V+   R+  KE+ ++  P +  + + T GV ++QEQVM++A + +GY+  
Sbjct: 72  VRPGPIQGDMVHPYLRRRNKEEAITYPPKLKSVFERTLGVPLFQEQVMEVAIIAAGYTPG 131

Query: 709 EADVLRRAMGKKIKEEM-DKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAA 767
           EAD LRRAM    +    +  +ER  +G  KNG     A  IFE +  F  YGF +SHAA
Sbjct: 132 EADELRRAMAAWKRHGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAA 191

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD 827
           ++A+++Y + W+K H P  F  A +           +  QDAR+ +I+I P  V     D
Sbjct: 192 SFALLTYASCWLKCHEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWD 251

Query: 828 FKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
             +          +  I   L  ++G     AR I  A + + F    D 
Sbjct: 252 CSLEPLDHPDSTRNLAIRLGLRMVRGFREDDARRIETARSKRLFSDATDL 301


>gi|291532877|emb|CBL05990.1| DNA polymerase III, alpha subunit [Megamonas hypermegale ART12/1]
          Length = 207

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 8/210 (3%)

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYV 184
               R+    L++   EG+I L+   +G I +A   ++ + AEK +  +  +FG D  ++
Sbjct: 2   YYKPRVDKDLLRQYH-EGIICLSSCIAGEIPQAIIRDNMERAEKLVQEYVDIFGKDNFFL 60

Query: 185 NLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQK 243
            +Q H+  +  +    ++ LA  ++L LVATN+  ++ +ED + HDVL+ +     +  K
Sbjct: 61  EIQNHQIPEEAKANKGLISLAQKYDLKLVATNDIHYIKKEDNDFHDVLLCIQTGRTLDDK 120

Query: 244 DRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDD 302
           DR +    D YLK+ +EM+++F D PEA+ NT+EIA RC+   +     LP F   E   
Sbjct: 121 DRMKFYNDDFYLKSGAEMLALFKDTPEAITNTLEIANRCNVSFEFGHLHLPNFPLPEGM- 179

Query: 303 IQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
               +E  L         + + +       
Sbjct: 180 ---TDEQYLHKLCKEKFIIDMLKLQRKYNK 206


>gi|160947401|ref|ZP_02094568.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270]
 gi|158446535|gb|EDP23530.1| hypothetical protein PEPMIC_01335 [Parvimonas micra ATCC 33270]
          Length = 1431

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 146/877 (16%), Positives = 287/877 (32%), Gaps = 173/877 (19%)

Query: 113  IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
             ++VS   L+   ++      S L+E   EGL++ +G   G + RAF    S+     + 
Sbjct: 621  YKMVSEG-LMKYFRRVAGFPKSRLKEY-REGLLIGSGNWDGELFRAFIEEKSEEEILEIA 678

Query: 173  TFKKLFGDRLYVNLQR-----HR---------GYDRYRESQVVQLAYTHELPLVATNNSL 218
             F   F       +Q      H             +    ++ +L    +  +VAT N  
Sbjct: 679  KFYDFF------EIQPISNLKHLFFRGKVLSIDDLKEINKKIYELGKKLDKLVVATGNVK 732

Query: 219  FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            +L + DY   +V++       + ++     +      +       +    EA E  V+  
Sbjct: 733  YLDKNDYIFRNVILYGQGRKNLEKEG----SFYFRTTDEMFDEFSYLGKDEAYEVVVKNT 788

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
                 +L+   PI         +      + ELR       +    +         +   
Sbjct: 789  NIFKDMLEDILPIPNGTYPPFIEG----SDEELRKICYDKAKSIYGENL------PKIVE 838

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             RL+ EL+ I +  ++  ++I    +  +  +   VG  RGS   S  A    IT+++PL
Sbjct: 839  DRLERELSSIIKNGYAVLYIIAQKLVWRSNDDGYLVG-SRGSVGSSFAATMAGITEVNPL 897

Query: 399  R-----------------------------------------FSLLFERFLNPDRMSMPD 417
                                                        + FE FL  D    PD
Sbjct: 898  IPHYICPKCKYSEFHEEYSGQSGVDMPDKECPHCKINMSKEGHDIPFEVFLGFDGDKEPD 957

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
             D++F  + +    +Y +  +G ++V +  T G++  K A   V + ++     +     
Sbjct: 958  IDLNFAGEYQSTCHKYTEELFGSDKVYRAGTIGTISDKTAFGYVKKFVEEKEISLTAG-- 1015

Query: 478  LIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDR 537
                                             +    +K+ G+ R +  H  G++I   
Sbjct: 1016 --------------------------------NIRRYVRKIVGVKRTSGQHPGGVMIVPH 1043

Query: 538  P--LSQLVPMYR---DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQR 592
               +    P+     D  S+   T F+ K I    ++K D LG    T+++   D     
Sbjct: 1044 NKEIYDFTPIQYPADDPTSETKTTHFSYKSI-SGRILKLDLLGHDVPTIIKHLGDLTG-- 1100

Query: 593  GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
               +++ +   +    ++   +   +     +S G    +     + +  +   +   RP
Sbjct: 1101 VDPLNIPMDDKETLNIFYSTDSLKLMDNKYKDSVGTLG-IPEYGTNFVRQM---LLDTRP 1156

Query: 653  GPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADV 712
              +  ++  +   +G +  +     +          I  ++ +     +  G     +  
Sbjct: 1157 KTLTELIRISGLSHGTDVWLGNAQELIKKGIPLNETICTRDDI-MTFLIFKGLENKRSFK 1215

Query: 713  LRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
            +   + K    + + +     S   +NGI +    +  ++      Y F K+HA AY ++
Sbjct: 1216 IMETVRKGKSLDEETE-----SYMRENGIPEWYIESCKKI-----KYLFPKAHAVAYVMM 1265

Query: 773  SYQTAWMKTHYPVEFLAASMTLEMDNV--------------------------------- 799
            SY+ A+ K HYP  F A   T ++DN                                  
Sbjct: 1266 SYRIAYFKVHYPEAFYATYFTTKIDNYPGNLIFKGLTAIQTKMKEIEELGKLASQKEQDV 1325

Query: 800  EKIKKFCQDARQFNIQIMPPSVNTP-CVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEAS 857
              I +  ++     I      +       F +  N +I     A+  V    +  I E  
Sbjct: 1326 YDILEVAEEMYLRGIVASKVDLERSDSSRFLIDGNGKILPPFRALDFVSDVNSVSIYEEV 1385

Query: 858  ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
               PF S+EDF  R    K+N+  LESL   G L+  
Sbjct: 1386 RKLPFISIEDFQERT---KINKNALESLREHGVLNKL 1419



 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 18/101 (17%)

Query: 1   LTQYLEKSPSFV----------HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           +   +EKS SFV           L ++S  S L+G ++L  +  ++       + +TD  
Sbjct: 311 MIDGMEKSSSFVYIDNAPEKRVELHLNSQMSGLDGCVNLEVLKSRLEEMGHTGVGVTDI- 369

Query: 51  NLFSALEFSQKAC----AAGIQPIIGCQLDIDMQDNLKMTN 87
                ++   K       + I+ + G +L++   +   + N
Sbjct: 370 ---GVVQAYPKMMDLFGKSDIKALYGLELNLLEDNPRILYN 407


>gi|312985340|gb|ADR30813.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|312985344|gb|ADR30815.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 103/244 (42%), Gaps = 25/244 (10%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +       +    + QD +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLN-----YDTKNAYLQDIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY     IKG+       I+E       F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGVIYVGFGKIKGLNRKVIDEIVEERNSHGLFSGLTDFLQRMAGSDIGESDIVQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L +AG+LD FGY+R +L  +  ++    +             F    G+   +  +    
Sbjct: 116  LTYAGSLDHFGYNRQELKTNAASLITAME-------------FG---GSLLSETKISAIG 159

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +   R  +E+ VLGF  SGHP+D  +  + K G     +  A      +++A M+ S 
Sbjct: 160  EMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVKKGYTQINDLKA---DQIVKMAVMIDSI 216

Query: 1005 QQKK 1008
            +  +
Sbjct: 217  RTTR 220


>gi|319645716|ref|ZP_07999947.1| DNA polymerase III [Bacillus sp. BT1B_CT2]
 gi|317392263|gb|EFV73059.1| DNA polymerase III [Bacillus sp. BT1B_CT2]
          Length = 468

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 69/449 (15%), Positives = 155/449 (34%), Gaps = 63/449 (14%)

Query: 27  LSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK---ACAAG-----IQPIIGCQLDID 78
           +++  +L+         +AITD   L + LE  Q        G      + I+G +  + 
Sbjct: 19  ITVKGLLETALEMNYKGLAITDHEVLSAHLEAIQTVRSMKKEGEMPQDFKLILGNEAYL- 77

Query: 79  MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK-----QSVRI-- 131
           +    ++ +  +      P  ++L    +G+++L  L S+ +  +        +   +  
Sbjct: 78  VDSLEEVRDNYQPGKTKFPHFLMLAVDEKGHEQLRILSSKAW-ENSFYTGTMERVPTVKK 136

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFF--------NSSQVAEKR-------LLTFKK 176
            +  L +     +I  T      ++                ++ ++        +     
Sbjct: 137 DVEDLLKKDPGHIIATTACLGSEVNIYLQKIMEVEKNDGDPELIKEYKLKIHQFITWCID 196

Query: 177 LFG-DRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
           +FG D+ ++ LQ     ++     ++VQ+A  + L  + T ++ +L  ED   H   +  
Sbjct: 197 VFGKDKFFIELQPALSEEQIYCNKKLVQIADGYGLKRIVTTDAHYLRPEDRAIHQAFLNA 256

Query: 235 AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL-PEALENTVEIARRCSFILQVHAPILP 293
                            +  +    M  I  ++  EA++NT+ I          H PI+P
Sbjct: 257 KDGEREVDSFYEACFVQNVDEIHERMNYIDKEIVEEAIQNTLLIGEMIEDYTIEHEPIIP 316

Query: 294 RFIEKEC-------------------DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
           +                          + + +++  L      G E +L +  + +    
Sbjct: 317 KMELPNFKLRHLFKPAYDKYEYIRKMSESKDDQDRYLLKLIEDGFENKLLKNDLTRDEFH 376

Query: 335 QD-----YRQRLDFELNVIARMKFSGYFLIVADFIQWA----KKNNIPVGPGRGSGAGSV 385
           +            +E++       + Y++ V + I          +  VG  RGS AG +
Sbjct: 377 KILSRINVELGELWEISQKLNQSMASYYVTVREIINIIWDDECGGDSLVGAARGSAAGFL 436

Query: 386 TAYALTITDIDPLRFSLLFERFLNPDRMS 414
             Y L  T I+P+++ L   R ++  R  
Sbjct: 437 INYLLDNTQINPMQYDLPHWRHIHKSRPD 465


>gi|224383932|gb|ACN42762.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|224383934|gb|ACN42763.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|312985338|gb|ADR30812.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score =  144 bits (364), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 103/244 (42%), Gaps = 25/244 (10%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +       +    + QD +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLN-----YDSKNAYLQDIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY     IKG+       I+E       F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGIIYVGFGKIKGLNRKVIDEIVEERNSHGLFSGLTDFLQRMAGSDIGESDIIQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L +AG+LD FGY+R +L  +  ++    +             F    G+   +  +    
Sbjct: 116  LTYAGSLDHFGYNRQELKTNAASLITAME-------------FG---GSLLSETKISAIG 159

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +   R  +E+ VLGF  SGHP+D  +  + K G     +  A      +++A M+ S 
Sbjct: 160  EMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVKKGYTQINDLKA---DQIVKMAVMIDSI 216

Query: 1005 QQKK 1008
            +  +
Sbjct: 217  RTTR 220


>gi|312985332|gb|ADR30809.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score =  144 bits (364), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 103/244 (42%), Gaps = 25/244 (10%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +       +    + QD +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLN-----YDSKNAYLQDIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY     IKG+       I+E       F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGFIYVGFGKIKGLNRKVIDEIVEERNSHGLFSGLTDFLQRMAGSDIGESDIIQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L +AG+LD FGY+R +L  +  ++    +             F    G+   +  +    
Sbjct: 116  LTYAGSLDHFGYNRQELKTNAASLITAME-------------FG---GSLLSETKISAIG 159

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +   R  +E+ VLGF  SGHP+D  +  + K G     +  A      +++A M+ S 
Sbjct: 160  EMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVKKGYTQINDLKA---DQIVKMAVMIDSI 216

Query: 1005 QQKK 1008
            +  +
Sbjct: 217  RTTR 220


>gi|224383918|gb|ACN42755.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|224383920|gb|ACN42756.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|224383922|gb|ACN42757.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|224383924|gb|ACN42758.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|224383928|gb|ACN42760.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|312985350|gb|ADR30818.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score =  144 bits (364), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 105/244 (43%), Gaps = 25/244 (10%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +  +  N      + QD +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLNYDTKNS-----YLQDIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY  L  IKG+       I++       F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGVIYVGLGKIKGLNRKVIDEIVKERNSHGLFSGLTDFLQRMAGSDIGESDIVQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L +AG+LD FGY+R +L  +  ++    +             F    G+   +  +    
Sbjct: 116  LTYAGSLDHFGYNRQELKTNAASLITAME-------------FG---GSLLSETKISAIG 159

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +   R  +E+ VLGF  SGHP+D  +  + K G     +  A      +++A M+ S 
Sbjct: 160  EMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVKKGYTQINDLKA---DQIVKMAVMIDSI 216

Query: 1005 QQKK 1008
            +  +
Sbjct: 217  RTTR 220


>gi|224383930|gb|ACN42761.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score =  144 bits (363), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 103/244 (42%), Gaps = 25/244 (10%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +       +    + QD +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLN-----YDSKNAYLQDIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY     IKG+       I+E       F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGVIYVGFGKIKGLNRKVINEIVEERNSHGLFSGLTDFLQRMAGSDIGESDIIQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L +AG+LD FGY+R +L  +  ++    +             F    G+   +  +    
Sbjct: 116  LTYAGSLDHFGYNRQELKTNAASLITAME-------------FG---GSLLSETKISAIG 159

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +   R  +E+ VLGF  SGHP+D  +  + K G     +  A      +++A M+ S 
Sbjct: 160  EMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVKKGYTQINDLKA---DQIVKMAVMIDSI 216

Query: 1005 QQKK 1008
            +  +
Sbjct: 217  RTTR 220


>gi|224383926|gb|ACN42759.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score =  144 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 105/244 (43%), Gaps = 25/244 (10%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +  +  N      + QD +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLNYDTKNS-----YLQDIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY  L  IKG+       I++       F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGVIYVGLGKIKGLNRKVMDEIVKERNSHGLFSGLTDFLQRMAGSDIGESDIVQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L +AG+LD FGY+R +L  +  ++    +             F    G+   +  +    
Sbjct: 116  LTYAGSLDHFGYNRQELKTNAASLITAME-------------FG---GSLLSETKISAIG 159

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +   R  +E+ VLGF  SGHP+D  +  + K G     +  A      +++A M+ S 
Sbjct: 160  EMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVKKGYTQINDLKA---DQIVKMAVMIDSI 216

Query: 1005 QQKK 1008
            +  +
Sbjct: 217  RTTR 220


>gi|13357937|ref|NP_078211.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC
            700970]
 gi|170762156|ref|YP_001752460.1| DNA polymerase III PolC [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|13959349|sp|Q9PQB4|DPO3_UREPA RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|11279168|pir||C82898 DNA polymerase III alpha chain 1 UU377 [imported] - Ureaplasma
            urealyticum
 gi|6899360|gb|AAF30786.1|AE002135_2 DNA polymerase III alpha chain 1 [Ureaplasma parvum serovar 3 str.
            ATCC 700970]
 gi|168827733|gb|ACA32995.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 3 str. ATCC 27815]
          Length = 1442

 Score =  144 bits (362), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 161/980 (16%), Positives = 302/980 (30%), Gaps = 215/980 (21%)

Query: 36   IAADQQPAIAITDT-----NNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGK 90
                   AI + D      NNLF                       I     +    Q  
Sbjct: 554  AHRADYDAIVLADVFKVMKNNLF-------------------NDFGITNLSEINTKLQTT 594

Query: 91   TPFPTVPS--IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLT 148
                      I L +      + + ELVS  +  D       I  S+L     + LI+  
Sbjct: 595  MLKNRSFGNWINLYIKNQANVKDMYELVSISHT-DMYYTRPTITTSFLANK-KDKLIISN 652

Query: 149  GGSSGPIDRAFFFNSSQVAEKRLLTFKKL-FGDRLYVNLQRHR--------GYDRYRESQ 199
                  +  A +  + +  ++ +  +  +       +  Q+H            +    +
Sbjct: 653  SIHESDLINALYSKNDEEIKRLIQRYDFITLPS---LGSQKHLVYAKKITIENVQKAFKK 709

Query: 200  VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSE 259
            ++ LA      ++ +++  +  ++D + +DV +    +T   +    R   + Y+ +   
Sbjct: 710  LIYLALELNKIIIYSSSPYYFFKDDKKFYDVYV----NTKGLEGKAHRFANEVYVPDLEY 765

Query: 260  MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG- 318
            +    +    A     ++       + +     P  I    DD  +  +  L    + G 
Sbjct: 766  IDQKNAIDELAYLEDEKL-------INLIINENPVHINSWFDDSIQPLKEGLYAPKMEGV 818

Query: 319  -----LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
                   V      I          QR+  ELN I +  FS  + I    ++ + ++   
Sbjct: 819  DQKTIDYVYHTAKKIYGENLPTIVEQRIKKELNSIIKHGFSVVYWISHLLVEKSMQDGYG 878

Query: 374  VGPGRGSGAGSVTAYALTITDIDPLR---------------------------------- 399
            VG  RGS   S+ A  L ITD++PL                                   
Sbjct: 879  VG-SRGSVGSSLVATFLNITDVNPLTPHYLCPNCKKCEFITNADDGFDLAPKSCEQCQTP 937

Query: 400  -----FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQA 454
                  ++ FE FL  D   +PD D++F    +     ++++ +G     +  T G++  
Sbjct: 938  MLTDGHNIPFETFLGFDGDKVPDIDLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAQ 997

Query: 455  KAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI 514
             +A   V +                                   R           +   
Sbjct: 998  TSAENTVKKYF-------------------------------ENRFNENKIIRDSTVSLY 1026

Query: 515  SQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLI 569
             QK     R    H  GI+I      +    P      D+      T F  +++    L+
Sbjct: 1027 VQKCIDSKRTTGQHPGGIIIVPKEYSIWDFSPYNFPANDINETWKTTHFAFEYLHD-SLL 1085

Query: 570  KFDFLGLKTLTLLQ----------KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
            KFD LG    T+L+          + +       +K    +   +   +  L  T G + 
Sbjct: 1086 KFDILGHDNPTILKLLKDYTGIDERDVPMYDPLVMKSFSDISALNIKPSDVLNETTGAIS 1145

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            I +  +  +R  L   +P    D+I +  L     +      +               + 
Sbjct: 1146 IPEFGTRFVRGMLVDTKPKSFADLIRISGLSHGESVWLGNAQS---------------LI 1190

Query: 680  PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
               K  + VI  ++ +M             A ++   + K  K + + Q           
Sbjct: 1191 KSGKLLKDVIACRDDIMTYLIR-QNVEPKTAFLIMEDVRKGKKIKPEHQII--------- 1240

Query: 740  GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV 799
             + +      +   A    Y F K+HA AY + +++ AW K +YP+E+ AA  ++  DN 
Sbjct: 1241 -LKELKVPEWYIESANKIKYMFPKAHATAYVMHAWKFAWYKIYYPLEYYAAFFSVRADNF 1299

Query: 800  E---------------------------------------KIKKFCQDARQFNIQIMPPS 820
            +                                        I +   +      +I   S
Sbjct: 1300 DLFVINQGKEFIEKTYNDIEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNIS 1359

Query: 821  VNTPCVDFKV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            +        V    +N I     AI+G+G T A  I+EA   K F ++ED  +R    K+
Sbjct: 1360 IEQSQATSYVIDKENNAIIPPFIAIQGLGETVANSIIEARNQKVFSTIEDLKNRT---KI 1416

Query: 878  NRRVLESLVFAGALDCFGYS 897
            +R  L++L   G LD    +
Sbjct: 1417 SRTDLKNLRVLGVLDHLSET 1436



 Score = 55.6 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  H+  S L+  +S   ++D    +Q   I ITD N + +  E ++ +    ++ I G
Sbjct: 324 ELNFHTKMSSLDAIISTQELIDFAVKNQLKTIGITDRNVVQAYPEIAKFSKKQDLKIIYG 383

Query: 73  CQ 74
            +
Sbjct: 384 LE 385


>gi|312985346|gb|ADR30816.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|312985348|gb|ADR30817.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 103/244 (42%), Gaps = 25/244 (10%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +       +    + QD +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLN-----YDSKNAYLQDIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY     IKG+       I++       F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGVIYVGFGKIKGLNRKVIDEIVKERNSHGLFSGLTDFLQRMAGSDIGESDIVQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L +AG+LD FGY+R +L  +  ++    +             F    G+   +  +    
Sbjct: 116  LTYAGSLDHFGYNRQELKTNAASLITAME-------------FG---GSLLSETKISAIG 159

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +   R  +E+ VLGF  SGHP+D  +  + K G     +  A      +++A M+ S 
Sbjct: 160  EMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVKKGYTQINDLKA---DQIVKMAVMIDSI 216

Query: 1005 QQKK 1008
            +  +
Sbjct: 217  RTTR 220


>gi|188524415|ref|ZP_03004436.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 12 str. ATCC 33696]
 gi|198273773|ref|ZP_03206307.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 4 str. ATCC 27816]
 gi|195659873|gb|EDX53253.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 12 str. ATCC 33696]
 gi|198249528|gb|EDY74310.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 4 str. ATCC 27816]
          Length = 1442

 Score =  143 bits (360), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 156/908 (17%), Positives = 296/908 (32%), Gaps = 189/908 (20%)

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            L + T    + + ELVS  +  D       I  S+L     + LI+        +  A +
Sbjct: 607  LYIKTQANVKDMYELVSISHT-DMYYTRPTITTSFLANK-KDKLIISNSVHESDLINALY 664

Query: 161  FNSSQVAEKRLLTFKKL-FGDRLYVNLQRHRGYDRYR--------ESQVVQLAYTHELPL 211
              S    +  +  +  +       +  Q+H  Y +            ++V LA     P+
Sbjct: 665  SKSDDEIKSIMQRYDFITLPS---IGSQKHLVYAQKITLENVQKAFKKLVSLALESNKPI 721

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            + +++  +  ++D + +DV +    +T   +    R   + Y+ +   +    +    A 
Sbjct: 722  IYSSSPYYFLKDDKKFYDVYV----NTKGLEGKSHRFANEEYVPDLEYVDQKSAIDELAY 777

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG------LEVRLAQ 325
                 +       + +     P+ I    DD  +  +  L    + G        V    
Sbjct: 778  LEDENL-------INLIINENPQIINSWFDDKIQPLKEGLYAPKMEGVDQKTIDYVYHTA 830

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
              I          QR+  EL+ I +  FS  + I    ++ + ++   VG  RGS   S+
Sbjct: 831  KKIYGDNLPTIVEQRIKKELDSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGSSL 889

Query: 386  TAYALTITDIDPLR---------------------------------------FSLLFER 406
             A  L ITD++PL                                         ++ FE 
Sbjct: 890  VATFLNITDVNPLAPHYLCPKCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPFET 949

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL  D   +PD D++F    +     ++++ +G     +  T G++  K+A   V +  +
Sbjct: 950  FLGFDGDKVPDIDLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAEKSAENAVKKYFE 1009

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
              +S+   +                                   +    QK     R   
Sbjct: 1010 NRFSENQIVRDST-------------------------------VSLYVQKCIDSKRTTG 1038

Query: 527  THAAGIVIGD--RPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             H  GI+I      +    P      D+      T F  +++    L+KFD LG    T+
Sbjct: 1039 QHPGGIIIVPKEYSIWDFSPYNFPANDINETWKTTHFAFEYLHD-SLLKFDILGHDNPTI 1097

Query: 582  L----------QKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            L           + +       +K+   +   +   +  L  T G + I +  +  +R  
Sbjct: 1098 LKLLKDYTGIDDRDVPMYDPLVMKLFSDISALNIKPSDVLNETTGAISIPEFGTRFVRGM 1157

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            L   +P    D+I +  L     +      +               +    K  + VI  
Sbjct: 1158 LVDTKPKSFADLIRISGLSHGESVWLGNAQS---------------LIKSGKLLKDVIAC 1202

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            ++ +M             A ++   + K  K + + Q            + +      + 
Sbjct: 1203 RDDIMTYLIR-QNVEPKTAFLIMEDVRKGKKIKPEHQSI----------LKELKIPEWYI 1251

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------- 800
              A    Y F K+HA AY + +++ AW K ++P+E+ AA  ++  DN +           
Sbjct: 1252 ESANKIKYMFPKAHATAYVMHAWKFAWYKIYHPLEYYAAFFSVRADNFDLFVINQGKEFI 1311

Query: 801  ----------------------------KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
                                         I +   +      +I   S+        V D
Sbjct: 1312 EKTYNDIEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVID 1371

Query: 833  ---NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
               N I     AI+G+G T A  I+EA   K F ++ED  +R    K++R  L++L   G
Sbjct: 1372 KQNNAIIPPFVAIQGLGETVANSIIEARNQKAFSTIEDLKNRT---KISRTDLKNLRELG 1428

Query: 890  ALDCFGYS 897
             LD    +
Sbjct: 1429 VLDHLSET 1436



 Score = 55.6 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  H+  S L+  +S   ++D    +Q   I ITD N + S  E ++ +    ++ I G
Sbjct: 324 ELNFHTKMSSLDAIISAQELIDFAVKNQLKTIGITDRNVVQSYPEIAKFSKKQDLKIIYG 383

Query: 73  CQ 74
            +
Sbjct: 384 LE 385


>gi|188024469|ref|ZP_02997117.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 7 str. ATCC 27819]
 gi|188018579|gb|EDU56619.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 7 str. ATCC 27819]
          Length = 1442

 Score =  143 bits (360), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 156/908 (17%), Positives = 296/908 (32%), Gaps = 189/908 (20%)

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            L + T    + + ELVS  +  D       I  S+L     + LI+        +  A +
Sbjct: 607  LYIKTQANVKDMYELVSISHT-DMYYTRPTITTSFLANK-KDKLIISNSVHESDLINALY 664

Query: 161  FNSSQVAEKRLLTFKKL-FGDRLYVNLQRHRGYDRYR--------ESQVVQLAYTHELPL 211
              S    +  +  +  +       +  Q+H  Y +            ++V LA     P+
Sbjct: 665  SKSDDEIKSIMQRYDFITLPS---IGSQKHLVYAQKITLENVQKAFKKLVSLALESNKPI 721

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            + +++  +  ++D + +DV +    +T   +    R   + Y+ +   +    +    A 
Sbjct: 722  IYSSSPYYFLKDDKKFYDVYV----NTKGLEGKSHRFANEEYVPDLEYVDQKSAIDELAY 777

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG------LEVRLAQ 325
                 +       + +     P+ I    DD  +  +  L    + G        V    
Sbjct: 778  LEDENL-------INLIINENPQIINSWFDDKIQPLKEGLYAPKMEGVDQKTIDYVYHTA 830

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
              I          QR+  EL+ I +  FS  + I    ++ + ++   VG  RGS   S+
Sbjct: 831  KKIYGDNLPTIVEQRIKKELDSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGSSL 889

Query: 386  TAYALTITDIDPLR---------------------------------------FSLLFER 406
             A  L ITD++PL                                         ++ FE 
Sbjct: 890  VATFLNITDVNPLAPHYLCPKCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPFET 949

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL  D   +PD D++F    +     ++++ +G     +  T G++  K+A   V +  +
Sbjct: 950  FLGFDGDKVPDIDLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAEKSAENAVKKYFE 1009

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
              +S+   +                                   +    QK     R   
Sbjct: 1010 NRFSENQIVRDST-------------------------------VSLYVQKCIDSKRTTG 1038

Query: 527  THAAGIVIGD--RPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             H  GI+I      +    P      D+      T F  +++    L+KFD LG    T+
Sbjct: 1039 QHPGGIIIVPKEYSIWDFSPYNFPANDINETWKTTHFAFEYLHD-SLLKFDILGHDNPTI 1097

Query: 582  L----------QKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            L           + +       +K+   +   +   +  L  T G + I +  +  +R  
Sbjct: 1098 LKLLKDYTGIDDRDVPMYDPLVMKLFSDISALNIKPSDVLNETTGAISIPEFGTRFVRGM 1157

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            L   +P    D+I +  L     +      +               +    K  + VI  
Sbjct: 1158 LVDTKPKSFADLIRISGLSHGESVWLGNAQS---------------LIKSGKLLKDVIAC 1202

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            ++ +M             A ++   + K  K + + Q            + +      + 
Sbjct: 1203 RDDIMTYLIR-QNVEPKTAFLIMEDVRKGKKIKPEHQSI----------LKELKIPEWYI 1251

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------- 800
              A    Y F K+HA AY + +++ AW K ++P+E+ AA  ++  DN +           
Sbjct: 1252 ESANKIKYMFPKAHATAYVMHAWKFAWYKIYHPLEYYAAFFSVRADNFDLFVINQGKEFI 1311

Query: 801  ----------------------------KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
                                         I +   +      +I   S+        V D
Sbjct: 1312 EKTYNDIEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVID 1371

Query: 833  ---NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
               N I     AI+G+G T A  I+EA   K F ++ED  +R    K++R  L++L   G
Sbjct: 1372 KQNNAIIPPFVAIQGLGETVANSIIEARNQKAFSTIEDLKNRT---KISRTDLKNLRELG 1428

Query: 890  ALDCFGYS 897
             LD    +
Sbjct: 1429 VLDHLSET 1436



 Score = 55.6 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  H+  S L+  +S   ++D    +Q   I ITD N + S  E ++ +    ++ I G
Sbjct: 324 ELNFHTKMSSLDAIISAQELIDFAVKNQLKTIGITDRNVVQSYPEIAKFSKKQDLKIIYG 383

Query: 73  CQ 74
            +
Sbjct: 384 LE 385


>gi|312985334|gb|ADR30810.1| DNA polymerase III alpha subunit [Oenococcus oeni]
 gi|312985336|gb|ADR30811.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 105/244 (43%), Gaps = 25/244 (10%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +  +  N      + Q+ +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLNYDTKNS-----YLQNIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY  L  IKG+       I++       F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGVIYVGLGKIKGLNRKVIDEIVKERNSHGLFSGLTDFLQRMAGSDIGESDIVQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L +AG+LD FGY+R +L  +  ++    +             F    G+   +  +    
Sbjct: 116  LTYAGSLDHFGYNRQELKTNAASLITAME-------------FG---GSLLSETKISAIG 159

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +   R  +E+ VLGF  SGHP+D  +  + K G     +  A      +++A M+ S 
Sbjct: 160  EMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVKKGYTQINDLKA---DQIVKMAVMIDSI 216

Query: 1005 QQKK 1008
            +  +
Sbjct: 217  RTTR 220


>gi|288549238|gb|ADC52798.1| putative cytoplasmic protein [Streptomyces platensis]
          Length = 281

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 64/158 (40%), Gaps = 6/158 (3%)

Query: 882  LESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL- 940
            +ESL+ AG  D   +SR  L    ++       V+K  +   +++FA   G  S      
Sbjct: 1    MESLIKAGTFDSLQHSRKGLTAIHEDAIDAVIPVKKAASFGQDDLFADLGGEGSSVAPFG 60

Query: 941  ----EKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVAT-IRGNNI 995
                   +          E+ +LG Y S HPLD  + IL         E +A+     ++
Sbjct: 61   LDFAIDDTEWPRRQLLATERDMLGLYVSAHPLDGAEHILSGARDCSIAELLASGRTTGDV 120

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +L+ ++   Q K T++G+    V   +     E  FFP
Sbjct: 121  QLSGLITGIQLKMTKQGNAWAIVNLVDRDAGIEVLFFP 158


>gi|188518224|ref|ZP_03003759.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 11 str. ATCC 33695]
 gi|188998138|gb|EDU67235.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 11 str. ATCC 33695]
          Length = 1442

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 156/908 (17%), Positives = 296/908 (32%), Gaps = 189/908 (20%)

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            L + T    + + ELVS  +  D       I  S+L     + LI+        +  A +
Sbjct: 607  LYIKTQANVKDMYELVSISHT-DMYYTRPTITTSFLANK-KDKLIISNSVHESDLINALY 664

Query: 161  FNSSQVAEKRLLTFKKL-FGDRLYVNLQRHRGYDRYR--------ESQVVQLAYTHELPL 211
              S    +  +  +  +       +  Q+H  Y +            ++V LA     P+
Sbjct: 665  SKSDDEIKSIMQRYDFITLPS---IGSQKHLVYAQKMTLENVQKAFKKLVSLALESNKPI 721

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            + +++  +  ++D + +DV +    +T   +    R   + Y+ +   +    +    A 
Sbjct: 722  IYSSSPYYFLKDDKKFYDVYV----NTKGLEGKSHRFANEEYVPDLEYVDQKSAIDELAY 777

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG------LEVRLAQ 325
                 +       + +     P+ I    DD  +  +  L    + G        V    
Sbjct: 778  LEDENL-------INLIINENPQIINSWFDDKIQPLKEGLYAPKMEGVDQKTIDYVYHTA 830

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
              I          QR+  EL+ I +  FS  + I    ++ + ++   VG  RGS   S+
Sbjct: 831  KKIYGDNLPTIVEQRIKKELDSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGSSL 889

Query: 386  TAYALTITDIDPLR---------------------------------------FSLLFER 406
             A  L ITD++PL                                         ++ FE 
Sbjct: 890  VATFLNITDVNPLAPHYLCPKCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPFET 949

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL  D   +PD D++F    +     ++++ +G     +  T G++  K+A   V +  +
Sbjct: 950  FLGFDGDKVPDIDLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAEKSAENAVKKYFE 1009

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
              +S+   +                                   +    QK     R   
Sbjct: 1010 NRFSENQIVRDST-------------------------------VSLYVQKCIDSKRTTG 1038

Query: 527  THAAGIVIGD--RPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             H  GI+I      +    P      D+      T F  +++    L+KFD LG    T+
Sbjct: 1039 QHPGGIIIVPKEYSIWDFSPYNFPANDINETWKTTHFAFEYLHD-SLLKFDILGHDNPTI 1097

Query: 582  L----------QKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            L           + +       +K+   +   +   +  L  T G + I +  +  +R  
Sbjct: 1098 LKLLKDYTGIDDRDVPMYDPLVMKLFSDISALNIKPSDVLNETTGAISIPEFGTRFVRGM 1157

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            L   +P    D+I +  L     +      +               +    K  + VI  
Sbjct: 1158 LVDTKPKSFADLIRISGLSHGESVWLGNAQS---------------LIKSGKLLKDVIAC 1202

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            ++ +M             A ++   + K  K + + Q            + +      + 
Sbjct: 1203 RDDIMTYLIR-QNVEPKTAFLIMEDVRKGKKIKPEHQSI----------LKELKIPEWYI 1251

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------- 800
              A    Y F K+HA AY + +++ AW K ++P+E+ AA  ++  DN +           
Sbjct: 1252 ESANKIKYMFPKAHATAYVMHAWKFAWYKIYHPLEYYAAFFSVRADNFDLFVINQGKEFI 1311

Query: 801  ----------------------------KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
                                         I +   +      +I   S+        V D
Sbjct: 1312 EKTYNDIEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVID 1371

Query: 833  ---NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
               N I     AI+G+G T A  I+EA   K F ++ED  +R    K++R  L++L   G
Sbjct: 1372 KQNNAIIPPFVAIQGLGETVANSIIEARNQKAFSTIEDLKNRT---KISRTDLKNLRELG 1428

Query: 890  ALDCFGYS 897
             LD    +
Sbjct: 1429 VLDHLSET 1436



 Score = 55.6 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  H+  S L+  +S   ++D    +Q   I ITD N + S  E ++ +    ++ I G
Sbjct: 324 ELNFHTKMSSLDAIISAQELIDFAVKNQLKTIGITDRNVVQSYPEIAKFSKKQDLKIIYG 383

Query: 73  CQ 74
            +
Sbjct: 384 LE 385


>gi|327197959|ref|YP_004306276.1| putative DNA polymerase III alpha subunit [Lactococcus phage 949]
 gi|306009279|gb|ADM73674.1| putative DNA polymerase III alpha subunit [Lactococcus phage 949]
          Length = 1429

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 81/680 (11%), Positives = 199/680 (29%), Gaps = 42/680 (6%)

Query: 15  QVHSSYSL---LEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             HS YS     +  +S  ++  +        ++  +   + +  E  + A    ++ I 
Sbjct: 13  HSHSFYSNISTHDSVISRTDVAKRAVELGHTTLSCIEHGYMGNVFETYRIAKEFNLKLIF 72

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +    ++D  +          T   ++++     G + +  L+S  Y         RI
Sbjct: 73  GTEFY-YVKDRFEKDR-------TNSHLLVVAKNENGKEAITGLISESYQTG-FYGRNRI 123

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH-R 190
               L  +  + +I+ T   + PI+          AE  +   K  FGD  ++ +Q H  
Sbjct: 124 DEELLFSLPKDDVIVTTACIASPINLY-----EGYAEYFIPKAKAYFGDNFFLEVQPHWN 178

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
                   +++     + +P +   ++ ++ EEDY+  D+ +         ++       
Sbjct: 179 KKQADFNEKLIGYRKKYNVPFILGVDTHYIKEEDYKMRDIYLKSRKIVYDKEEGFF---- 234

Query: 251 DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
             Y + ++ +         + E  +E       + +  A ++   I+       K E+ +
Sbjct: 235 MDYPETKTIIERFKKQNVLSDEQIIEAFDNSHVVDKFDAIVINDDIKMPSVYPDKTEKEK 294

Query: 311 LRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           ++       +               +Y   + +E++++     + YFL+    I+  K+ 
Sbjct: 295 VKILKKHINKAWTEDRKHISKERWGEYLDAIKYEMSIVENTHMTDYFLMNEKIIRLGKQK 354

Query: 371 NIPVGPGRGSGA---GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRR 427
              V    G G     ++     ++  I  +                +  F  D  ++  
Sbjct: 355 YGGVLTKTGRGCFEETALVQTKDSLKKISEVEVGDKVINRFGEWDNVINKFTYDIEEEMI 414

Query: 428 DEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
                    KY            +   K  ++D      +    + +   ++     H V
Sbjct: 415 QIDHLNSAGKYNP-------IIATFDHKILIKDGNGTKFVQAKDLTKNDYVVLPKLKHIV 467

Query: 488 SLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYR 547
                 D     +        D             R  +      +  D+  +  V +  
Sbjct: 468 EETYRKDFIDLNDFNDFGFEYDDKFIYETYEGANNRRYNKTINRFIPNDKVHNIFVGLMY 527

Query: 548 DVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDD 605
              +     V+ +      K    K  F  +     +   +     + ++  +S      
Sbjct: 528 GDGNVHRNDVSLYVNTKTHKIYKNKNIFKLISDRVGVSMKVYSAKNKNLEHLISTSKIFA 587

Query: 606 HETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK 665
                   T      F+  +  +            E +I        G I       +  
Sbjct: 588 SFIKKEYFTSN-KDSFKKFNKSLFNQSNENLSGLKEGLILSDGSVSDGRISFDNTSKDL- 645

Query: 666 NGKEKIVSIHPLIDPMLKET 685
                 +  +  ++ +L ET
Sbjct: 646 ------MYSYKKLNDILHET 659



 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 108/648 (16%), Positives = 234/648 (36%), Gaps = 61/648 (9%)

Query: 380  SGAGSVTAYALTITDID----PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
            S         L  T +D    PL+         +    +    D+DF     +  ++  +
Sbjct: 742  SAPSFYLNKLLDFTAVDRVNSPLKLYPTRFMSESRILEAKSLPDVDFNTANPEPFMKAQK 801

Query: 436  NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
               G +   Q+I +G++Q K A +   R L +P ++   + + +            I   
Sbjct: 802  EILGEDNAYQMIAYGTMQEKDAFKTYCRGLDIPKNEYWTIAEDLERWVKTDKWRDIIKAS 861

Query: 496  SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
                                Q+  G+    S H    ++   P+S+ + + +  +  + V
Sbjct: 862  --------------------QQFIGVVTSFSPHPCSSLLLSDPISRKIGVIK-TKEGVDV 900

Query: 556  TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-FLAQRGVKVDLSLIPFDDHETYHLLTT 614
                    +    +K D L +    ++ K       +      L+ +  ++ + + L   
Sbjct: 901  ALIGSYDSDVYKYLKNDLLVVTVWDIIAKVCKELNIEIPDVRTLTKLVENNDKVWDLYKD 960

Query: 615  KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSI 674
                 + Q  +   +  +   +P  + ++   V+  RP          +    ++     
Sbjct: 961  GMVATLNQAGTPSGKPQVMQYKPQSVRELSMWVAGIRPSFAS----MKSYFLNRQPFSYN 1016

Query: 675  HPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFIS 734
             P  D +LK++   +++QE +       +GY       L +A+ KK K  ++   ++FI 
Sbjct: 1017 IPAFDELLKDSDNFVLFQESI-MATLQFAGYEEDVTYGLLKAIAKKKKGIIEPIHDKFIE 1075

Query: 735  GASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL 794
            G      S+  A+ ++ ++    +YGFN SHA + A+ S   AW+K  YP+ + A  + +
Sbjct: 1076 GFVAKTGSEEQALKVWTIIENAVNYGFNSSHAYSVALDSLYGAWLKATYPLVYFAVVLNV 1135

Query: 795  EMDNVEKIKKFCQDARQFNIQI--MPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARH 852
              ++ +K  +   +   F+I +  +    +     ++   N IY  ++ +  +    A +
Sbjct: 1136 YKNSKDKQAELINELEYFDISLKGLQFGKSKSDYSYETETNTIYKGISTVAYLNQQVADN 1195

Query: 853  IMEASADKPFDSLED----FCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNI 908
            +   + ++ ++  +D    F   +D    + R +  L+  G    FG       +S+  +
Sbjct: 1196 LYNLAKERHYE-KDDVIQLFLDILDGALADNRQMNILIKLGFFKEFGE------ESI--L 1246

Query: 909  QKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSG-HP 967
             +    +   +T K   IF   K              +   VR EN +   G      H 
Sbjct: 1247 LELYNTMTGYQTKKPNPIFTDNKKLDVKYSR--THKEKTKLVRIENIKEYYGLILKNVHL 1304

Query: 968  L------DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKT 1009
            L      D     +  MG   Y E++    G ++ +   V+    K T
Sbjct: 1305 LPTTNLFDRLTSEVEYMG---YAETLDQSLGKDVYV---VMDINTKYT 1346


>gi|327541636|gb|EGF28163.1| protein containing Polymerase and histidinol phosphatase,
          N-terminal domain [Rhodopirellula baltica WH47]
          Length = 108

 Score =  142 bits (357), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 44/81 (54%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          + ++  FVHL  HS YSLL+GA  +  ++ +       A+A+TD  NL  ALEF +KA  
Sbjct: 18 IPETKPFVHLHCHSHYSLLDGAGDIGKLVKRAVDHGMNALALTDHGNLHGALEFYRKAKD 77

Query: 65 AGIQPIIGCQLDIDMQDNLKM 85
          AGI PIIG +  I        
Sbjct: 78 AGINPIIGYEAYIAPGSRFDK 98


>gi|186701836|ref|ZP_02971504.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 6 str. ATCC 27818]
 gi|186701125|gb|EDU19407.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 6 str. ATCC 27818]
          Length = 1442

 Score =  142 bits (357), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 164/986 (16%), Positives = 304/986 (30%), Gaps = 218/986 (22%)

Query: 30   NNILDKIAADQQPAIAITDT-----NNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLK 84
            + I  +       AI + D      NNLF                       I   + + 
Sbjct: 551  DEIAHRA---DYDAIVLADVFKVMKNNLF-------------------NDFGITNLNEIN 588

Query: 85   MTNQGKTPFPTVPS--IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTE 142
               Q            I L +      + + ELVS  +  D       I  S+L     +
Sbjct: 589  TKLQTVMLKNRSFGNWINLYIKNQVNVKDMYELVSISHT-DMYYTRPTITTSFLANK-KD 646

Query: 143  GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL-FGDRLYVNLQRHR--------GYD 193
             LI+        +  A +  S    +  +  +  +       +  Q+H            
Sbjct: 647  KLIISNSVHESDLINALYSKSDDEIKSIMQRYDFITLPS---IGSQKHLVYAKKITIENV 703

Query: 194  RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
            +    ++V LA      ++ +++  +  ++D + +DV +    +T   +    R   + Y
Sbjct: 704  QKAFKKLVYLALELNKIIIYSSSPYYFLKDDKKFYDVYV----NTKGLEGKSHRFANEEY 759

Query: 254  LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
            + +   +    +    A      +       + +     P+ I    DD  +  +  L  
Sbjct: 760  VPDLEYVDQKSAIDELAYLEDENL-------INLIINENPQIINSWFDDKIQPLKEGLYA 812

Query: 314  KAVAG------LEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
              + G        V      I          QR+  EL+ I +  FS  + I    ++ +
Sbjct: 813  PKMEGVDQKTIDYVYHTAKKIYGDNLPTIVEQRIKKELDSIIKHGFSVVYWISHLLVEKS 872

Query: 368  KKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---------------------------- 399
             ++   VG  RGS   S+ A  L ITD++PL                             
Sbjct: 873  MQDGYGVG-SRGSVGSSLVATFLNITDVNPLTPHYLCPNCKKCEFITNADDGFDLVPKDC 931

Query: 400  -----------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIIT 448
                        ++ FE FL  D   +PD D++F    +     ++++ +G     +  T
Sbjct: 932  EQCQIQMLTDGHNIPFETFLGFDGDKVPDIDLNFSGVYQAVAHNFIKSIFGETHSYRAGT 991

Query: 449  FGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSV 508
             G++   +A   V +                                   R         
Sbjct: 992  IGTMAQTSAENTVKKYF-------------------------------ENRFNENKIIRD 1020

Query: 509  DRLLEISQKLEGLYRHASTHAAGIVIGD--RPLSQLVPMY---RDVRSDLPVTQFNMKWI 563
              +    QK     R    H  GI+I      +    P      D+      T F  +++
Sbjct: 1021 STVSLYVQKCIDSKRTTGQHPGGIIIVPKEYSIWDFSPYNFPANDINETWKTTHFAFEYL 1080

Query: 564  EKAGLIKFDFLGLKTLTLLQ----------KSLDFLAQRGVKVDLSLIPFDDHETYHLLT 613
                L+KFD LG    T+L+          + +       +K    +   +   +  L  
Sbjct: 1081 HD-SLLKFDILGHDNPTILKLLKDYTGIDERDVPMYDPLVMKSFSDISALNIKPSDVLNE 1139

Query: 614  TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
            T G + I +  +  +R  L   +P    D+I +  L     +      +           
Sbjct: 1140 TTGAISIPEFGTRFVRGMLVDTKPKSFADLIRISGLSHGESVWLGNAQS----------- 1188

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +    K  + VI  ++ +M             A ++   + K  K + + Q     
Sbjct: 1189 ----LIKSGKLLKDVIACRDDIMTYLIR-QNVEPKTAFLIMEDVRKGKKIKPEHQII--- 1240

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
                   + +      +   A    Y F K+HA AY + +++ AW K +YP+E+ AA  +
Sbjct: 1241 -------LKELKVPEWYIESANKIKYMFPKAHATAYVMHAWKFAWYKIYYPLEYYAAFFS 1293

Query: 794  LEMDNVE---------------------------------------KIKKFCQDARQFNI 814
            +  DN +                                        I +   +      
Sbjct: 1294 VRADNFDLFVINQGKEFIEKTYNDIEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGF 1353

Query: 815  QIMPPSVNTPCVDFKVGD---NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            +I   S+        V D   N I     AI+G+G T A  I+EA   K F ++ED  +R
Sbjct: 1354 KISNISIEQSQATSYVIDKQNNAIIPPFIAIQGLGETVANSIIEARNQKAFSTIEDLKNR 1413

Query: 872  VDSKKLNRRVLESLVFAGALDCFGYS 897
                K++R  L++L   G LD    +
Sbjct: 1414 T---KISRTDLKNLRELGVLDHLSET 1436



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 1/86 (1%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  H+  S L+  +S   ++D    +Q   I ITD N + +  E ++ +    ++ I G
Sbjct: 324 ELNFHTKMSSLDAIISAQELIDFAVKNQLKTIGITDRNVVQAYPEIAKFSKKQDLKIIYG 383

Query: 73  CQL-DIDMQDNLKMTNQGKTPFPTVP 97
            +  +++ Q  L +  + +       
Sbjct: 384 LETEELEDQIPLVLNVRDQNLDDATY 409


>gi|301633239|gb|ADK86793.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            pneumoniae FH]
          Length = 1443

 Score =  141 bits (356), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 136/897 (15%), Positives = 274/897 (30%), Gaps = 172/897 (19%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++ + +  G+ +L EL+S   L D       +  S LQ+     +I       G I +A 
Sbjct: 607  IIYIKSQSGFAKLYELLSIA-LTDNNATRPLVLTSTLQKFAKSFVI-TDNPVQGDIFKAA 664

Query: 160  FFNSSQVAEKRLLT--FKKLFGDRLYVNLQRHRGYDRYRESQVVQL----AYTHELPLVA 213
                 +  E  +    F  +     Y       G  +      ++L    A      +  
Sbjct: 665  LTKPLKELEAAIKRVDFVLIAPPDAYAGYTIREGLKKEAIPNAIKLVVDTAQRLNKLVAV 724

Query: 214  TNNSLFLSEEDYEAHDVLMAVA-HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE 272
             +++ F+   + E +  ++          +    +                  +    L 
Sbjct: 725  ASDAYFIHPWENEYYKAIVCAKGLGGRWHRHFNYKEREQRVPNVFVRTTGEMLNEMSFLG 784

Query: 273  NTVEIARRCSFILQVHAPILPRFIEKE----CDDIQKEEENELRNKAVAGLEVRLAQGAI 328
              +          ++   +    +          + +     L  K            AI
Sbjct: 785  EQLAYELVVKNTNKLAKQLTADDLVPVQTKLQPPVIEGSNENLAAKTW------SQAKAI 838

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
                  +   QR+  EL  I    F   + I    ++ + ++   VGP RGS   S+ A 
Sbjct: 839  YGDPLPKLIEQRIQEELKAIIDNGFGIIYWISHLLVKQSVQDGYFVGP-RGSIGSSLVAN 897

Query: 389  ALTITDIDPL-----------------------------------------RFSLLFERF 407
             + I++I+PL                                           ++ F  F
Sbjct: 898  LIGISEINPLVPHYLCESCQYFEVNEEVDDGYDLMVRDCPKCGAKAAFKGDGHNIPFATF 957

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            +      +PD D++F  + + +   YV+  +G +   +  T  ++  K A        ++
Sbjct: 958  MGFAGDKIPDIDLNFSSEYQAKAHAYVRELFGEQYTFRAGTIATVAEKTAYGYARNYFEI 1017

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
                               +    +A        +             QKL G+ R    
Sbjct: 1018 -------------------IKQTELATAPEIERFK-------------QKLVGIKRTTGQ 1045

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG----LIKFDFLGLKTLTLLQ 583
            H  GI+I     S          +D   + +     E       ++K D LG    T+L+
Sbjct: 1046 HPGGIMIFPNHKSVYEFTPCGYPADDTSSDWKTTHFEYDALGDTILKLDILGQDDPTMLK 1105

Query: 584  KSLDFLA----------QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
               D             ++  ++  S+ P      Y L    G +GI +  +  +R+ LE
Sbjct: 1106 HLADLTHVNPQNIPRFDKKLTEMFWSVNPLKLKPHY-LDEPTGAIGIPEFGTKFVRKILE 1164

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +P    D+I +  L   G              +      +  +  ++     +++Y  
Sbjct: 1165 QTKPKGFGDLIRVSGLSH-GKNVWADNAQKILKDQ------NLSLKDVIACRDDIMLYLI 1217

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
                           +A      M K  K        + +     NG+ +    +  ++ 
Sbjct: 1218 H-----------KGMQAKDAFEIMEKVRKGI--ALNAKEVQLMQSNGVEQHWINSCLKI- 1263

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------- 800
                 Y F K+HAAAY +++++ AW K ++P+ + A  ++ ++   +             
Sbjct: 1264 ----SYLFPKAHAAAYVLMAWRIAWFKLYHPLSYYACLLSFKLKEHDVSGFKSGVSFVKQ 1319

Query: 801  ----------------------KIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYY 837
                                     +   +     I++   S+       F   +  +  
Sbjct: 1320 KLEELNTLYRIKRIKPKEAELLTSYEVYLEMMARGIKLEQISLTHSHATRFVEHNGMLIA 1379

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
                I G+G   A  I+EA  +KPF SL+DF  R    K+ ++ +E+      LD F
Sbjct: 1380 PFITIPGMGEAVANSIIEARNEKPFSSLDDFKKRT---KITKKHIEAFTQMQLLDEF 1433



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S  +G  S+              IA+TD +N+       + A   G++ I 
Sbjct: 322 VELVFHTKMSAFDGINSVQEYAQFAKERDWKTIAVTDKDNIHIYPTLYEVAKKYGLKAIY 381

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       ++N  KT       ++ 
Sbjct: 382 GLECNLIDDHIKIVSNPDKTKLKDATFVIF 411


>gi|312985342|gb|ADR30814.1| DNA polymerase III alpha subunit [Oenococcus oeni]
          Length = 221

 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 102/244 (41%), Gaps = 25/244 (10%)

Query: 766  AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPC 825
            A AY+ ++++ A++K ++P+EF +  +       +    + QD +   I+++ P +N   
Sbjct: 1    AVAYSKLAFEMAYLKIYFPLEFFSVLLN-----YDTKNAYLQDIKNKGIKLLGPDINHAE 55

Query: 826  VDFKVGDNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
              F      IY     IKG+       I+E       F  L DF  R+    +    +  
Sbjct: 56   RGFISDKGVIYVGFGKIKGLNRKVIDEIVEERNSHGLFSGLTDFLQRMAGSDIGESDIVQ 115

Query: 885  LVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFS 944
            L +A +LD FGY+R +L  +  ++    +             F    G+   +  +    
Sbjct: 116  LTYASSLDHFGYNRQELKTNAASLITAME-------------FG---GSLLSETKISAIG 159

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +   R  +E+ VLGF  SGHP+D  +  + K G     +  A      +++A M+ S 
Sbjct: 160  EMSLLDRLAHEKEVLGFTISGHPIDSLRKEIVKKGYTQINDLKA---DQIVKMAVMIDSI 216

Query: 1005 QQKK 1008
            +  +
Sbjct: 217  RTTR 220


>gi|167901171|ref|ZP_02488376.1| error-prone DNA polymerase [Burkholderia pseudomallei NCTC 13177]
          Length = 239

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 67/200 (33%), Gaps = 20/200 (10%)

Query: 834  RIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDC 893
             +   L+ ++G+G   AR I  A A  PF S+++   R     L RR LE+L  A A   
Sbjct: 6    AVRLGLSLVRGLGEEAARRIGAARAAGPFASVDELARRA---CLERRDLEALAAANAFAT 62

Query: 894  FGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFE 953
               +R   L             +         + A      + +           +    
Sbjct: 63   LAGNRRDALW------------QAVAAAPERGLLAAAPIDEAVR---PALGAPTEADDVF 107

Query: 954  NEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS 1013
             + R +G   + HP+ + +P L    +           G   R   +V ++Q   T KG 
Sbjct: 108  ADYRTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGRLARACGLVTARQMPGTAKG- 166

Query: 1014 RIGWVTFSEPAKEYEANFFP 1033
             + +VT  +          P
Sbjct: 167  -VLFVTLEDETGCVNVIVRP 185


>gi|195867849|ref|ZP_03079848.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 9 str. ATCC 33175]
 gi|195660426|gb|EDX53684.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 9 str. ATCC 33175]
          Length = 1442

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 154/908 (16%), Positives = 294/908 (32%), Gaps = 189/908 (20%)

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            L + T    + + ELVS  +  D       I  S+L     + LI+        +  A +
Sbjct: 607  LYIKTQANVKDMYELVSISHT-DMYYTRPTITTSFLANK-KDKLIISNSVHESDLINALY 664

Query: 161  FNSSQVAEKRLLTFKKL-FGDRLYVNLQRHR--------GYDRYRESQVVQLAYTHELPL 211
              S    +  +  +  +       +  Q+H            +    ++V LA      +
Sbjct: 665  SKSDDEIKSIMQRYDFITLPS---IGSQKHLVYAKKITLENVQKAFKKLVSLALELNKII 721

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            + +++  +  ++D + +DV +    +T   +    R   + Y+ +   +    +    A 
Sbjct: 722  IYSSSPYYFLKDDKKFYDVYV----NTKGLEGKSHRFANEEYVPDLEYVDQKSAIDELAY 777

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG------LEVRLAQ 325
                 +       + +     P+ I    DD  +  +  L    + G        V    
Sbjct: 778  LEDENL-------INLIINENPQIINSWFDDKIQPLKEGLYAPKMEGVDQKTIDYVYHTA 830

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
              I          QR+  EL+ I +  FS  + I    ++ + ++   VG  RGS   S+
Sbjct: 831  KKIYGDNLPTIVEQRIKKELDSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGSSL 889

Query: 386  TAYALTITDIDPLR---------------------------------------FSLLFER 406
             A  L ITD++PL                                         ++ FE 
Sbjct: 890  VATFLNITDVNPLAPHYLCPKCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPFET 949

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL  D   +PD D++F    +     ++++ +G     +  T G++  K+A   V +  +
Sbjct: 950  FLGFDGDKVPDIDLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAEKSAENAVKKYFE 1009

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
              +S+   +                                   +    QK     R   
Sbjct: 1010 NRFSENQIVRDST-------------------------------VSLYVQKCIDSKRTTG 1038

Query: 527  THAAGIVIGD--RPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             H  GI+I      +    P      D+      T F  +++    L+KFD LG    T+
Sbjct: 1039 QHPGGIIIVPKEYSIWDFSPYNFPANDINETWKTTHFAFEYLHD-SLLKFDILGHDNPTI 1097

Query: 582  L----------QKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            L           + +       +K+   +   +   +  L  T G + I +  +  +R  
Sbjct: 1098 LKLLKDYTGIDDRDVPMYDPLVMKLFSDISALNIKPSDVLNETTGAISIPEFGTRFVRGM 1157

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            L   +P    D+I +  L     +      +               +    K  + VI  
Sbjct: 1158 LVDTKPKSFADLIRISGLSHGESVWLGNAQS---------------LIKSGKLLKDVIAC 1202

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            ++ +M             A ++   + K  K + + Q            + +      + 
Sbjct: 1203 RDDIMTYLIR-QNVEPKTAFLIMEDVRKGKKIKPEHQSI----------LKELKIPEWYI 1251

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------- 800
              A    Y F K+HA AY + +++ AW K ++P+E+ AA  ++  DN +           
Sbjct: 1252 ESANKIKYMFPKAHATAYVMHAWKFAWYKIYHPLEYYAAFFSVRADNFDLFVINQGKEFI 1311

Query: 801  ----------------------------KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
                                         I +   +      +I   S+        V D
Sbjct: 1312 EKTYNDIEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVID 1371

Query: 833  ---NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
               N I     AI+G+G T A  I+EA   K F ++ED  +R    K++R  L++L   G
Sbjct: 1372 KQNNAIIPPFVAIQGLGETVANSIIEARNQKAFSTIEDLKNRT---KISRTDLKNLRELG 1428

Query: 890  ALDCFGYS 897
             LD    +
Sbjct: 1429 VLDHLSET 1436



 Score = 55.6 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  H+  S L+  +S   ++D    +Q   I ITD N + S  E ++ +    ++ I G
Sbjct: 324 ELNFHTKMSSLDAIISAQELIDFAVKNQLKTIGITDRNVVQSYPEIAKFSKKQDLKIIYG 383

Query: 73  CQ 74
            +
Sbjct: 384 LE 385


>gi|221316478|ref|ZP_03598283.1| hypothetical protein BsubsN3_22464 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
          Length = 329

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/321 (14%), Positives = 113/321 (35%), Gaps = 25/321 (7%)

Query: 12  VHLQV-HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA----- 65
            H     S++ L +       ++D         + ITD   L S ++  +          
Sbjct: 12  THSHTDASNFRLRDAINKPEELIDYCHEIGLSGVVITDHETLSSHVKAHKYVEENKERLG 71

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
             +   G ++ +  +++  M  +      +    +L+  + +GY+ L +L S+ +     
Sbjct: 72  DFKLGFGNEIYLVDKEDT-MEKKSLNQKISFHHFILIAKSQKGYEGLKKLSSKAWYNSFF 130

Query: 126 KQ---SVRICLSWL----QEIGTEGLIMLTGGSSGPIDRAFFF-------NSSQVAEKRL 171
            +    V      L    QE   E +I  T    G + ++           + +     +
Sbjct: 131 YRGMERVPTYKDELMSLMQEYQGE-IIACTACVGGELPQSLISYHDKPTPENKKRVHDFI 189

Query: 172 LTFKKLFGDRLYVNLQRHRGYDRYR-ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV 230
           +  K +FG+ LY  LQ  +  D+      +++++  + +  + + ++ +L+++   AH +
Sbjct: 190 VWLKGVFGEDLYFELQPSKNRDQLVANEMMLKVSEAYNVKCIVSTDAHYLNKKYAPAHKI 249

Query: 231 LMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAP 290
            +  +       +         Y +          D    ++NT EI  +   I      
Sbjct: 250 YLTASEGEREVDEFYATTYVMGYEELLEYFDEELLD--VLVDNTNEIRSKLGTITFAQET 307

Query: 291 ILPRFIEKECDDIQKEEENEL 311
            +P+    + +  Q    + +
Sbjct: 308 KVPKAHIPKYEMSQLFVPHYM 328


>gi|13507773|ref|NP_109722.1| DNA polymerase III PolC [Mycoplasma pneumoniae M129]
 gi|2494192|sp|P75080|DPO3_MYCPN RecName: Full=DNA polymerase III polC-type; Short=PolIII
 gi|1673778|gb|AAB95768.1| DNA polymerase III (dnaE) alpha chain [Mycoplasma pneumoniae M129]
          Length = 1443

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 135/897 (15%), Positives = 274/897 (30%), Gaps = 172/897 (19%)

Query: 100  VLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
            ++ + +  G+ +L EL+S   L D       +  S LQ+     +I       G I +A 
Sbjct: 607  IIYIKSQSGFAKLYELLSIA-LTDNNATRPLVLTSTLQKFAKSFVI-TDNPVQGDIFKAA 664

Query: 160  FFNSSQVAEKRLLT--FKKLFGDRLYVNLQRHRGYDRYRESQVVQL----AYTHELPLVA 213
                 +  E  +    F  +     Y       G  +      ++L    A      +  
Sbjct: 665  LTKPLKELEAAIKRVDFVLIAPPGAYAGYTIREGLKKEAIPNAIKLVVDTAQRLNKLVAV 724

Query: 214  TNNSLFLSEEDYEAHDVLMAVA-HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALE 272
             +++ F+   + E +  ++          +    +                  +    L 
Sbjct: 725  ASDAYFIHPWENEYYKAIVCAKGLGGRWHRHFNYKEREQRVPNVFVRTTGEMLNEMSFLG 784

Query: 273  NTVEIARRCSFILQVHAPILPRFIEKE----CDDIQKEEENELRNKAVAGLEVRLAQGAI 328
              +          ++   +    +          + +     L  K            AI
Sbjct: 785  EQLAYELVVENTNKLAKQLTADDLVPVQTKLQPPVIEGSNENLAAKTW------SQAKAI 838

Query: 329  AKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAY 388
                  +   QR+  EL  I    F   + I    ++ + ++   VGP RGS   S+ A 
Sbjct: 839  YGDPLPKLIEQRIQEELKAIIDNGFGIIYWISHLLVKQSVQDGYFVGP-RGSIGSSLVAN 897

Query: 389  ALTITDIDPL-----------------------------------------RFSLLFERF 407
             + I++I+PL                                           ++ F  F
Sbjct: 898  LIGISEINPLVPHYLCESCQYFEVNEEVDDGYDLMVRDCPKCGAKAAFKGDGHNIPFATF 957

Query: 408  LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            +      +PD D++F  + + +   YV+  +G +   +  T  ++  K A        ++
Sbjct: 958  MGFAGDKIPDIDLNFSSEYQAKAHAYVRELFGEQYTFRAGTIATVAEKTAYGYARNYFEI 1017

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
                               +    +A        +             QKL G+ R    
Sbjct: 1018 -------------------IKQTELATAPEIERFK-------------QKLVGIKRTTGQ 1045

Query: 528  HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAG----LIKFDFLGLKTLTLLQ 583
            H  GI+I     S          +D   + +     E       ++K D LG    T+L+
Sbjct: 1046 HPGGIMIFPNHKSVYEFTPCGYPADDTSSDWKTTHFEYDALGNTILKLDILGQDDPTMLK 1105

Query: 584  KS----------LDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
                        +    ++  ++  S+ P      Y L    G +GI +  +  +R+ LE
Sbjct: 1106 HLGDLTHVNPQNIPRFDKKLTEMFWSVNPLKLKPHY-LDEPTGAIGIPEFGTKFVRKILE 1164

Query: 634  GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
              +P    D+I +  L   G              +      +  +  ++     +++Y  
Sbjct: 1165 QTKPKGFGDLIRVSGLSH-GKNVWADNAQKILKDQ------NLSLKDVIACRDDIMLYLI 1217

Query: 694  QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
                           +A      M K  K        + +     NG+ +    +  ++ 
Sbjct: 1218 H-----------KGMQAKDAFEIMEKVRKGI--ALNAKEVQLMQSNGVEQHWINSCLKI- 1263

Query: 754  AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------- 800
                 Y F K+HAAAY +++++ AW K ++P+ + A  ++ ++   +             
Sbjct: 1264 ----SYLFPKAHAAAYVLMAWRIAWFKLYHPLSYYACLLSFKLKEHDVSGFKSGVSFVKQ 1319

Query: 801  ----------------------KIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYY 837
                                     +   +     I++   S+       F   +  +  
Sbjct: 1320 KLEELNTLYRIKRIKPKEAELLTSYEVYLEMMARGIKLEQISLTHSHATRFVEHNGMLIA 1379

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
                I G+G   A  I+EA  +KPF SL+DF  R    K+ ++ +E+      LD F
Sbjct: 1380 PFITIPGMGEAVANSIIEARNEKPFSSLDDFKKRT---KITKKHIEAFTQMQLLDEF 1433



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H+  S  +G  S+              IA+TD +N+       + A   G++ I 
Sbjct: 322 VELVFHTKMSAFDGINSVQEYAQFAKERDWKTIAVTDKDNIHIYPTLYEVAKKYGLKAIY 381

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       ++N  KT       ++ 
Sbjct: 382 GLECNLIDDHIKIVSNPDKTKLKDATFVIF 411


>gi|171920838|ref|ZP_02932008.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 13 str. ATCC 33698]
 gi|171903036|gb|EDT49325.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 13 str. ATCC 33698]
          Length = 1442

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 155/908 (17%), Positives = 293/908 (32%), Gaps = 189/908 (20%)

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            L + T    + + ELVS  +  D       I  S+L     + LI+        +  A +
Sbjct: 607  LYIKTQANVKDMYELVSISHT-DMYYTRPTITTSFLANK-KDKLIISNSVHESDLINALY 664

Query: 161  FNSSQVAEKRLLTFKKL-FGDRLYVNLQRHRGYDRYR--------ESQVVQLAYTHELPL 211
              S    +  +  +  +       +  Q+H  Y +            ++V LA      +
Sbjct: 665  SKSDDEIKSIMQRYDFITLPS---IGSQKHLVYAQKITLENVQKAFKKLVNLALESNKLI 721

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            + +++  +  ++D + +DV +    +T   +    R   + Y+ +   +    +    A 
Sbjct: 722  IYSSSPYYFLKDDKKFYDVYV----NTKGLEGKSHRFANEEYVPDLEYVDQKSAIDELAY 777

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG------LEVRLAQ 325
                 +               P+ I    DD  +  +  L    + G        V    
Sbjct: 778  LEDENLVNLIINE-------NPQIINSWFDDKIQPLKEGLYAPKMEGVDQKTIDYVYHTA 830

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
              I          QR+  EL+ I +  FS  + I    ++ + ++   VG  RGS   S+
Sbjct: 831  KKIYGDNLPTIVEQRIKKELDSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGSSL 889

Query: 386  TAYALTITDIDPLR---------------------------------------FSLLFER 406
             A  L ITD++PL                                         ++ FE 
Sbjct: 890  VATFLNITDVNPLAPHYLCPKCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPFET 949

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL  D   +PD D++F    +     ++++ +G     +  T G++  K+A   V +  +
Sbjct: 950  FLGFDGDKVPDIDLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAEKSAENAVKKYFE 1009

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
              +S+   +                                   +    QK     R   
Sbjct: 1010 NRFSENQIVRDST-------------------------------VSLYVQKCIDSKRTTG 1038

Query: 527  THAAGIVIGD--RPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             H  GI+I      +    P      D+      T F  +++    L+KFD LG    T+
Sbjct: 1039 QHPGGIIIVPKEYSIWDFSPYNFPANDINETWKTTHFAFEYLHD-SLLKFDILGHDNPTI 1097

Query: 582  L----------QKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            L           + +       +K+   +   +   +  L  T G + I +  +  +R  
Sbjct: 1098 LKLLKDYTGIDDRDVPMYDPLVMKLFSDISALNIKPSDVLNETTGAISIPEFGTRFVRGM 1157

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            L   +P    D+I +  L     +      +               +    K  + VI  
Sbjct: 1158 LVDTKPKSFADLIRISGLSHGESVWLGNAQS---------------LIKSGKLLKDVIAC 1202

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            ++ +M             A ++   + K  K + + Q            + +      + 
Sbjct: 1203 RDDIMTYLIR-QNVEPKTAFLIMEDVRKGKKIKPEHQSI----------LKELKIPEWYI 1251

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------- 800
              A    Y F K+HA AY + +++ AW K ++P+E+ AA  ++  DN +           
Sbjct: 1252 ESANKIKYMFPKAHATAYVMHAWKFAWYKIYHPLEYYAAFFSVRADNFDLFVINQGKEFI 1311

Query: 801  ----------------------------KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
                                         I +   +      +I   S+        V D
Sbjct: 1312 EKTYNDIEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVID 1371

Query: 833  ---NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
               N I     AI+G+G T A  I+EA   K F ++ED  +R    K++R  L++L   G
Sbjct: 1372 KQNNAIIPPFVAIQGLGETVANSIIEARNQKAFSTIEDLKNRT---KISRTDLKNLRELG 1428

Query: 890  ALDCFGYS 897
             LD    +
Sbjct: 1429 VLDHLSET 1436



 Score = 55.6 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  H+  S L+  +S   ++D    +Q   I ITD N + S  E ++ +    ++ I G
Sbjct: 324 ELNFHTKMSSLDAIISAQELIDFAVKNQLKTIGITDRNVVQSYPEIAKFSKKQDLKIIYG 383

Query: 73  CQ 74
            +
Sbjct: 384 LE 385


>gi|314927243|gb|EFS91074.1| hypothetical protein HMPREF9607_02750 [Propionibacterium acnes
           HL044PA1]
 gi|314970781|gb|EFT14879.1| hypothetical protein HMPREF9622_02070 [Propionibacterium acnes
           HL037PA3]
          Length = 262

 Score =  139 bits (350), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 70/266 (26%), Positives = 109/266 (40%), Gaps = 14/266 (5%)

Query: 59  SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
           ++ A   GI  IIG +L I + +      Q     P    +++L +  EGY+RL E ++ 
Sbjct: 2   AEAAEVCGIPTIIGSELSIGIPE-----PQNGVADPVGSHLLVLANGPEGYRRLTEALTD 56

Query: 119 MYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
            YL + G K      L  L E+      +LTG   G + +         AE  L     L
Sbjct: 57  AYLAEGGHKGHPVHNLDHLAEVADGHWTVLTGCRKGAVRQGLAKGMP-QAEAELRRLVDL 115

Query: 178 FG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
           FG   + V L  HR   D      + +LA  H +  VAT  + +   E +E    L AV 
Sbjct: 116 FGIGNVLVELTDHRAPTDSRDNDVLAELASRHSVSTVATTAAHYAGAEQFELSCALSAVR 175

Query: 236 HSTVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
               + + D          L++ +EM  +FS   +A++NTV +A + +F LQ   P LP 
Sbjct: 176 ARRSLDEMDGWLPPGPVARLRSGAEMADLFSRHRDAVDNTVAVAEKTAFHLQSVRPRLPE 235

Query: 295 FIEKECDDIQKEEENELRNKAVAGLE 320
               +         + LR+    G  
Sbjct: 236 QKVPDG----HTPISWLRHLVEEGRR 257


>gi|171920237|ref|ZP_02690314.2| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 1 str. ATCC 27813]
 gi|171902634|gb|EDT48923.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            parvum serovar 1 str. ATCC 27813]
          Length = 1442

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 154/908 (16%), Positives = 289/908 (31%), Gaps = 189/908 (20%)

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            L + T    + + ELVS  +  D       I  S+L     + LI+        +  A +
Sbjct: 607  LYIKTQANVKDMYELVSISHT-DMYYTRPTITTSFLANK-KDKLIISNSVHESDLINALY 664

Query: 161  FNSSQVAEKRLLTFKKL-FGDRLYVNLQRHR--------GYDRYRESQVVQLAYTHELPL 211
              S    +  +  +  +       +  Q+H            +    ++V LA      +
Sbjct: 665  SKSDDEIKSIIQRYDFITLPS---IGSQKHLVYVKKITLENVQKAFKKLVSLALELNKII 721

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            + +++  +  ++D + +DV +    +T   +    R   + Y+ +   +    +    A 
Sbjct: 722  IYSSSPYYFLKDDKKFYDVYV----NTKGLEGKSHRFANEEYVPDLEYVDQKSAIDELAY 777

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG------LEVRLAQ 325
                 +       + +     P+ I    DD  +  +  L    + G        V    
Sbjct: 778  LEDENL-------INLIINENPQIINSWFDDKIQPLKEGLYAPKMEGVDQKTIDYVYHTA 830

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
              I          QR+  EL+ I +  FS  + I    ++ + ++   VG  RGS   S+
Sbjct: 831  KKIYGDNLPTIVEQRIKKELDSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGSSL 889

Query: 386  TAYALTITDIDPLR---------------------------------------FSLLFER 406
             A  L ITD++PL                                         ++ FE 
Sbjct: 890  VATFLNITDVNPLTPHYLCPNCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPFET 949

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL  D   +PD D++F    +     ++++ +G     +  T G++   +A   V +   
Sbjct: 950  FLGFDGDKVPDIDLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAQTSAENTVKKYF- 1008

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
                                            R           +    QK     R   
Sbjct: 1009 ------------------------------ENRFNENKIIRDSTVSLYVQKCIDSKRTTG 1038

Query: 527  THAAGIVIGD--RPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             H  GI+I      +    P      D+      T F  +++    L+KFD LG    T+
Sbjct: 1039 QHPGGIIIVPKEYSIWDFSPYNFPANDINETWKTTHFAFEYLHD-SLLKFDILGHDNPTI 1097

Query: 582  LQ----------KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            L+          + +       +K    +   +   +  L  T G + I +  +  +R  
Sbjct: 1098 LKLLKDYTGIDERDVPMYDPLVMKSFSDISALNIKPSDVLNETTGAISIPEFGTRFVRGM 1157

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            L   +P    D+I +  L     +      +               +    K  + VI  
Sbjct: 1158 LVDTKPKSFADLIRISGLSHGESVWLGNAQS---------------LIKSGKLLKDVIAC 1202

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            ++ +M             A ++   + K  K + + Q            + +      + 
Sbjct: 1203 RDDIMTYLIR-QNVEPKTAFLIMEDVRKGKKIKPEHQII----------LKELKVPEWYI 1251

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------- 800
              A    Y F K+HA AY + +++ AW K +YP+E+ AA  ++  DN +           
Sbjct: 1252 ESANKIKYMFPKAHATAYVMHAWKFAWYKIYYPLEYYAAFFSVRADNFDLFVINQGKEFI 1311

Query: 801  ----------------------------KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
                                         I +   +      +I   S+        V D
Sbjct: 1312 EKTYNDIEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVID 1371

Query: 833  ---NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
               N I     AI+G+G T A  I+EA   K F ++ED  +R    K++R  L++L   G
Sbjct: 1372 KQNNAIIPPFIAIQGLGETVANSIIEARNQKVFSTIEDLKNRT---KISRTDLKNLRELG 1428

Query: 890  ALDCFGYS 897
             LD    +
Sbjct: 1429 VLDHLSET 1436



 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 1/86 (1%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  H+  S L+G +S   ++D    +Q   I ITD N + +  E ++ +    ++ I G
Sbjct: 324 ELNFHTKMSSLDGIISAQELIDFAVKNQLKTIGITDRNVVQAYPEIAKFSKKQDLKIIYG 383

Query: 73  CQL-DIDMQDNLKMTNQGKTPFPTVP 97
            +  +++ Q  L +  + +       
Sbjct: 384 LETEELEDQIPLVLNVRDQNLDDATY 409


>gi|209554353|ref|YP_002284813.1| DNA polymerase III PolC [Ureaplasma urealyticum serovar 10 str. ATCC
            33699]
 gi|209541854|gb|ACI60083.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 10 str. ATCC 33699]
          Length = 1442

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 154/908 (16%), Positives = 295/908 (32%), Gaps = 189/908 (20%)

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            L + T    + + ELVS  +  D       I  S+L     + LI+        +  A +
Sbjct: 607  LYIKTQANVKDMYELVSISHT-DMYYTRPTITTSFLANK-KDKLIISNSVHESDLINALY 664

Query: 161  FNSSQVAEKRLLTFKKL-FGDRLYVNLQRHR--------GYDRYRESQVVQLAYTHELPL 211
              S+   +  +  +  +       +  Q+H            +    ++V LA      +
Sbjct: 665  SKSNDEIKSIMQRYDFITLPS---IGSQKHLVYAKKITLENVQKAFKKLVSLALELNKII 721

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            + +++  +  ++D + +DV +    +T   +    R   + Y+ +   +    +    A 
Sbjct: 722  IYSSSPYYFLKDDKKFYDVYV----NTKGLEGKSHRFANEEYVPDLEYVDQKSAIDELAY 777

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG------LEVRLAQ 325
                 +       + +     P+ I    DD  +  +  L    + G        V    
Sbjct: 778  LEDENL-------INLIINENPQIINSWFDDKIQPLKEGLYAPKMEGVDQKTIDYVYHTA 830

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
              I          QR+  EL+ I +  FS  + I    ++ + ++   VG  RGS   S+
Sbjct: 831  KKIYGDNLPTIVEQRIKKELDSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGSSL 889

Query: 386  TAYALTITDIDPLR---------------------------------------FSLLFER 406
             A  L ITD++PL                                         ++ FE 
Sbjct: 890  VATFLNITDVNPLAPHYLCPKCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPFET 949

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL  D   +PD D++F    +     ++++ +G     +  T G++  K+A   V +  +
Sbjct: 950  FLGFDGDKVPDIDLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAEKSAENAVKKYFE 1009

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
              +S+   +                                   +    QK     R   
Sbjct: 1010 NRFSENQIVRDST-------------------------------VSLYVQKCIDSKRTTG 1038

Query: 527  THAAGIVIGD--RPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             H  GI+I      +    P      D+      T F  +++    L+KFD LG    T+
Sbjct: 1039 QHPGGIIIVPKEYSIWDFSPYNFPANDINETWKTTHFAFEYLHD-SLLKFDILGHDNPTI 1097

Query: 582  L----------QKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            L           + +       +K+   +   +   +  L  T G + I +  +  +R  
Sbjct: 1098 LKLLKDYTGIDDRDVPMYDPLVMKLFSDISALNIKPSDVLNETTGAISIPEFGTRFVRGM 1157

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            L   +P    D+I +  L     +      +               +    K  + VI  
Sbjct: 1158 LVDTKPKSFADLIRISGLSHGESVWLGNAQS---------------LIKSGKLLKDVIAC 1202

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            ++ +M             A ++   + K  K + + Q            + +      + 
Sbjct: 1203 RDDIMTYLIR-QNVEPKTAFLIMEDVRKGKKIKPEHQSI----------LKELKIPEWYI 1251

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------- 800
              A    Y F K+HA AY + +++ AW K ++P+E+ AA  ++  DN +           
Sbjct: 1252 ESANKIKYMFPKAHATAYVMHAWKFAWYKIYHPLEYYAAFFSVRADNFDLFVINQGKEFI 1311

Query: 801  ----------------------------KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
                                         I +   +      +I   S+        V D
Sbjct: 1312 EKTYNDIEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVID 1371

Query: 833  ---NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
               N I     AI+G+G T A  I+EA   K F ++ED  +R    K++R  L++L   G
Sbjct: 1372 KQNNAIIPPFVAIQGLGETVANSIIEARNQKAFSTIEDLKNRT---KISRTDLKNLRELG 1428

Query: 890  ALDCFGYS 897
             LD    +
Sbjct: 1429 VLDHLSET 1436



 Score = 55.6 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  H+  S L+  +S   ++D    +Q   I ITD N + S  E ++ +    ++ I G
Sbjct: 324 ELNFHTKMSSLDAIISAQELIDFAVKNQLKTIGITDRNVVQSYPEIAKFSKKQDLKIIYG 383

Query: 73  CQ 74
            +
Sbjct: 384 LE 385


>gi|36938266|gb|AAQ86809.1| DnaE precursor [Thermosynechococcus vulcanus]
          Length = 200

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 64/170 (37%), Positives = 97/170 (57%), Gaps = 8/170 (4%)

Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
             A   FNKSH+ AY  ++YQTA++K ++PVE++AA +T    + +K++++        I
Sbjct: 31  AIAANCFNKSHSTAYGYVTYQTAFLKANFPVEYMAALLTANSGDQDKVQRYIATCLSMGI 90

Query: 815 QIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV- 872
           +++PP VN   +DF    N+I + L+A++ VG      I++A      F SL DFC RV 
Sbjct: 91  EVLPPDVNRSDIDFTPVGNKILFGLSAVRNVGQGMIEVILQARSEGGAFQSLGDFCERVP 150

Query: 873 ----DSKKLNRRVLESLVFAGALDCFGYSR--MQLLQSLDNIQKYAQWVE 916
               DS+ LNRR LESL+  GA+D     R   QLLQ L  + ++AQ   
Sbjct: 151 RVAGDSRILNRRALESLIACGAMDSLHPQRNCNQLLQDLPLVLEWAQGRA 200


>gi|185178976|ref|ZP_02964733.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 5 str. ATCC 27817]
 gi|225551037|ref|ZP_03771983.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 8 str. ATCC 27618]
 gi|184209258|gb|EDU06301.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 5 str. ATCC 27817]
 gi|225378852|gb|EEH01217.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 8 str. ATCC 27618]
          Length = 1442

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 154/908 (16%), Positives = 294/908 (32%), Gaps = 189/908 (20%)

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            L + T    + + ELVS  +  D       I  S+L     + LI+        +  A +
Sbjct: 607  LYIKTQANVKDMYELVSISHT-DMYYTRPTITTSFLANK-KDKLIISNSVHESDLINALY 664

Query: 161  FNSSQVAEKRLLTFKKL-FGDRLYVNLQRHR--------GYDRYRESQVVQLAYTHELPL 211
              S    +  +  +  +       +  Q+H            +    ++V LA      +
Sbjct: 665  SKSDDEIKSIMQRYDFITLPS---IGSQKHLVYAKKITLENVQKAFKKLVSLALELNKII 721

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            + +++  +  ++D + +DV +    +T   +    R   + Y+ +   +    +    A 
Sbjct: 722  IYSSSPYYFLKDDKKFYDVYV----NTKGLEGKSHRFANEEYVPDLEYVDQKSAIDELAY 777

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG------LEVRLAQ 325
                 +       + +     P+ I    DD  +  +  L    + G        V    
Sbjct: 778  LEDENL-------INLIINENPQIINSWFDDKIQPLKEGLYAPKMEGVDQKTIDYVYHTA 830

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
              I          QR+  EL+ I +  FS  + I    ++ + ++   VG  RGS   S+
Sbjct: 831  KKIYGDNLPTIIEQRIKKELDSIIKHGFSVVYWISHLLVEKSMQDGYGVG-SRGSVGSSL 889

Query: 386  TAYALTITDIDPLR---------------------------------------FSLLFER 406
             A  L ITD++PL                                         ++ FE 
Sbjct: 890  VATFLNITDVNPLAPHYLCPKCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPFET 949

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL  D   +PD D++F    +     ++++ +G     +  T G++  K+A   V +  +
Sbjct: 950  FLGFDGDKVPDIDLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAEKSAENAVKKYFE 1009

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
              +S+   +                                   +    QK     R   
Sbjct: 1010 NRFSENQIVRDST-------------------------------VSLYVQKCIDSKRTTG 1038

Query: 527  THAAGIVIGD--RPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             H  GI+I      +    P      D+      T F  +++    L+KFD LG    T+
Sbjct: 1039 QHPGGIIIVPKEYSIWDFSPYNFPANDINETWKTTHFAFEYLHD-SLLKFDILGHDNPTI 1097

Query: 582  L----------QKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            L           + +       +K+   +   +   +  L  T G + I +  +  +R  
Sbjct: 1098 LKLLKDYTGIDDRDVPMYDPLVMKLFSDISALNIKPSDVLNETTGAISIPEFGTRFVRGM 1157

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            L   +P    D+I +  L     +      +               +    K  + VI  
Sbjct: 1158 LVDTKPKSFADLIRISGLSHGESVWLGNAQS---------------LIKSGKLLKDVIAC 1202

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            ++ +M             A ++   + K  K + + Q            + +      + 
Sbjct: 1203 RDDIMTYLIR-QNVEPKTAFLIMEDVRKGKKIKPEHQSI----------LKELKIPEWYI 1251

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------- 800
              A    Y F K+HA AY + +++ AW K ++P+E+ AA  ++  DN +           
Sbjct: 1252 ESANKIKYMFPKAHATAYVMHAWKFAWYKIYHPLEYYAAFFSVRADNFDLFVINQGKEFI 1311

Query: 801  ----------------------------KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
                                         I +   +      +I   S+        V D
Sbjct: 1312 EKTYNDIEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVID 1371

Query: 833  ---NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
               N I     AI+G+G T A  I+EA   K F ++ED  +R    K++R  L++L   G
Sbjct: 1372 KQNNAIIPPFVAIQGLGETVANSIIEARNQKAFSTIEDLKNRT---KISRTDLKNLRELG 1428

Query: 890  ALDCFGYS 897
             LD    +
Sbjct: 1429 VLDHLSET 1436



 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  H+  S L+  +S   ++D    +Q   I +TD N + S  E ++ +    ++ I G
Sbjct: 324 ELNFHTKMSSLDAIISAQELIDFAVKNQLKTIGVTDRNVVQSYPEIAKFSKKQDLKIIYG 383

Query: 73  CQ 74
            +
Sbjct: 384 LE 385


>gi|238810189|dbj|BAH69979.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 1467

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 140/961 (14%), Positives = 286/961 (29%), Gaps = 224/961 (23%)

Query: 73   CQLDIDMQDNLKMT------------NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             ++ + + D L                           +  +    EG +     ++   
Sbjct: 589  AEVWVALMDELGKKGILTFNQLNSYIKDDLYNKTFSYEVSTIAKNYEGLKEQYGYLTTA- 647

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            L        +  +  L    +E L++ +G     +   +F++S +   K L  +      
Sbjct: 648  LTKNLYNGPKTFMEDLAA-HSENLLLGSGTLKSRLLDVYFYSSHEEFIKELKLYD----- 701

Query: 181  RLYVNLQ-----RHRGYDRYRESQVVQLAYTHELP--------LVATNNSLFLSEEDYEA 227
              Y+ +       H   + +   + ++++    +         +VAT +  +L+  D  A
Sbjct: 702  --YIEVPAPQVFSHWIDNEFITQEQLEISLKEIIKEAIKAKKIVVATADVKYLNLYDKVA 759

Query: 228  HDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMV----------SIFSDLPEALENTVE 276
            ++VL+ A                 +  +   ++            +   D     +  + 
Sbjct: 760  YEVLVYAKGIKNSRHYLFNYEQAKNGNIPIPNQDYLTTEEMLEQFAFLKDKQLIEDIVIN 819

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
               + + +      I  +    + +D  K    +L +        +  +         + 
Sbjct: 820  NTNKIADMCDKIQVIKDKLYTPKFEDSGK----KLHDLVYETAYKKYGE------KLPKI 869

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
              +R++ ELN I    FS  + I    IQ +  N   VG  RGS   S  A    IT+++
Sbjct: 870  VEERIEAELNPIIDYGFSVIYWISHILIQKSTDNGFVVG-SRGSVGSSFVATLAGITEVN 928

Query: 397  PLR-----------------------------------------FSLLFERFLNPDRMSM 415
            PL                                            + FE FL      +
Sbjct: 929  PLPPHYLCNKCKYFELSKDEKITSGYDLPNKNCPKCNILLEADGQGIPFETFLGFKADKV 988

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  D + ++   V+  + +    +  T  ++  K +   V              
Sbjct: 989  PDIDLNFSGDIQGDIHNEVKRIFDNTHTLKAGTISTVALKTSYGHV-------------- 1034

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                                  F E  + + S   +  ++ K+E L R    H  GI+I 
Sbjct: 1035 --------------------KAFTEEAMRNYSEPFIDFLAHKIEKLKRTTGQHPGGILII 1074

Query: 536  D--RPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 +    P+             + F+   I    ++K D LG    T+++     L 
Sbjct: 1075 PKEFDVYDFTPINYPANEPDSSWLTSHFDFHSIHD-NILKLDLLGHDNPTIIR-----LL 1128

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGI---------------FQLESSGMRQALEGM 635
            ++   +++  IP +D +   L  +   + I                +  +S +RQ L+  
Sbjct: 1129 KKYTNINIDDIPKNDPKVLSLFASTKAMNIKPEQINNETTGALGLPEFGTSFVRQMLKEA 1188

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
            +P    ++I+L  L     +              +I                VI  ++ +
Sbjct: 1189 KPKSFANLISLAGLSHGENVWLNNAQELVSKKNFEIT--------------DVICCRDDI 1234

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            MQ            A  +   + K      D+ K           + +    +      K
Sbjct: 1235 MQFLLK-KKVEPLFAFNIMEKVRKGKGLTDDEVKR----------LKEYKVADWMIESMK 1283

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------------- 800
               Y F K+HA AY ++++  AW K +YP+   A         VE               
Sbjct: 1284 KIKYMFPKAHATAYVLMAWWIAWFKLYYPLAHYACYFATHAKAVEIESMIDIKGGHKVTD 1343

Query: 801  ---------------------KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR---IY 836
                                  + +  Q+       I    +        + DN+   + 
Sbjct: 1344 RLNQLNNIPKNERKVKDDDLIPVFEIAQELYARGFYIANIDLKKSAAHEWIIDNKHGCLI 1403

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
                +I G+G   A  ++EA   K F S ED   R     +N+ ++E +           
Sbjct: 1404 PPFKSIDGLGDAAAVSLVEARDAKDFTSKEDVIRRTS---VNKTLIEKMDKLNIFKGLDD 1460

Query: 897  S 897
            +
Sbjct: 1461 T 1461



 Score = 74.8 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 30/71 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L V S  + ++G +   +I+         A+AI D +      EF   A  + ++P+ 
Sbjct: 345 VELHVSSKMNTMDGLIFPKDIVAFAEKLNHSAVAIMDVDGAQGYPEFYNAAKKSKVKPLF 404

Query: 72  GCQLDIDMQDN 82
           G    +  + N
Sbjct: 405 GTAFSVINKSN 415


>gi|319777750|ref|YP_004137401.1| DNA polymerase iii alpha subunit [Mycoplasma fermentans M64]
 gi|318038825|gb|ADV35024.1| DNA polymerase III alpha subunit [Mycoplasma fermentans M64]
          Length = 1461

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 141/961 (14%), Positives = 287/961 (29%), Gaps = 224/961 (23%)

Query: 73   CQLDIDMQDNLKMT------------NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             ++ + + D L                           +  +    EG +     ++   
Sbjct: 583  AEVWVALMDELGKKGILTFNQLNSYIKDDLYNKTFSYEVSTIAKNYEGLKEQYGYLTTA- 641

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            L        +  +  L    +E L++ +G     +   +F++S +   K L  +      
Sbjct: 642  LTKNLYNGPKTFMEDLAA-HSENLLLGSGTLKSRLLDVYFYSSHEEFIKELKLYD----- 695

Query: 181  RLYVNLQ-----RHRGYDRYRESQVVQLAYTHELP--------LVATNNSLFLSEEDYEA 227
              Y+ +       H   + +   + ++++    +         +VAT +  +L+  D  A
Sbjct: 696  --YIEVPAPQVFSHWIDNEFITQEQLEISLKEIIKEAIKAKKIVVATADVKYLNLYDKVA 753

Query: 228  HDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMV----------SIFSDLPEALENTVE 276
            ++VL+ A                 +  +   ++            +   D     +  + 
Sbjct: 754  YEVLVYAKGIKNSRHYLFNYEQAKNGNIPIPNQDYLTTEEMLEQFAFLKDKQLIEDIVIN 813

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
               + + +      I  +    + +D  K    +L +        +  +         + 
Sbjct: 814  NTNKIADMCDKIQVIKDKLYTPKFEDSGK----KLHDLVYETAYKKYGE------KLPKI 863

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
              +R++ ELN I    FS  + I    IQ +  N   VG  RGS   S  A    IT+++
Sbjct: 864  VEERIEAELNPIIDYGFSVIYWISHILIQKSTDNGFVVG-SRGSVGSSFVATLAGITEVN 922

Query: 397  PLR-----------------------------------------FSLLFERFLNPDRMSM 415
            PL                                            + FE FL      +
Sbjct: 923  PLPPHYLCNKCKYFELSKDEKITSGYDLPNKNCPKCNILLEADGQGIPFETFLGFKADKV 982

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  D + ++   V+  +G+    +  T  ++  K +   V              
Sbjct: 983  PDIDLNFSGDIQGDIHNEVKRIFGNTHTLKAGTISTVALKTSYGHV-------------- 1028

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                                  F E  + + S   +  ++ K+E L R    H  GI+I 
Sbjct: 1029 --------------------KAFTEEAMRNYSEPFIDFLAHKIEKLKRTTGQHPGGILII 1068

Query: 536  D--RPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 +    P+             + F+   I    ++K D LG    T+++     L 
Sbjct: 1069 PKEFDVYDFTPINYPANEPDSSWLTSHFDFHSIHD-NILKLDLLGHDNPTIIR-----LL 1122

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGI---------------FQLESSGMRQALEGM 635
            ++   +++  IP +D +   L  +   + I                +  +S +RQ L+  
Sbjct: 1123 KKYTNINIDDIPKNDPKVLSLFASTKAMNIKPEQINNETTGALGLPEFGTSFVRQMLKEA 1182

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
            +P    ++I+L  L     +              +I                VI  ++ +
Sbjct: 1183 KPKSFANLISLAGLSHGENVWLNNAQELVSKKNFEIT--------------DVICCRDDI 1228

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            MQ            A  +   + K      D+ K           + +    +      K
Sbjct: 1229 MQFLLK-KKVEPLFAFNIMEKVRKGKGLTDDEVKR----------LKEYKVADWMIESMK 1277

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------------- 800
               Y F K+HA AY ++++  AW K +YP+   A         VE               
Sbjct: 1278 KIKYMFPKAHATAYVLMAWWIAWFKLYYPLAHYACYFATHAKAVEIESMIDIKGGHKVTD 1337

Query: 801  ---------------------KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR---IY 836
                                  + +  Q+       I    +        + DN+   + 
Sbjct: 1338 RLNQLNNIPKNERKVKDDDLIPVFEIAQELYARGFYIANIDLKKSAAHEWIIDNKHGCLI 1397

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
                +I G+G   A  ++EA   K F S ED   R     +N+ ++E +           
Sbjct: 1398 PPFKSIDGLGDAAAVSLVEARDAKDFTSKEDVIRRTS---VNKTLIEKMDKLNIFKGLDD 1454

Query: 897  S 897
            +
Sbjct: 1455 T 1455



 Score = 74.8 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 30/71 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L V S  + ++G +   +I+         A+AI D +      EF   A  + ++P+ 
Sbjct: 339 VELHVSSKMNTMDGLIFPKDIVAFAEKLNHSAVAIMDVDGAQGYPEFYNAAKKSKVKPLF 398

Query: 72  GCQLDIDMQDN 82
           G    +  + N
Sbjct: 399 GTAFSVINKSN 409


>gi|308190354|ref|YP_003923285.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER]
 gi|307625096|gb|ADN69401.1| hypothetical protein MFE_08400 [Mycoplasma fermentans JER]
          Length = 1461

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 141/961 (14%), Positives = 287/961 (29%), Gaps = 224/961 (23%)

Query: 73   CQLDIDMQDNLKMT------------NQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
             ++ + + D L                           +  +    EG +     ++   
Sbjct: 583  AEVWVALMDELGKKGILTFNQLNSYIKDDLYNKTFSYEVSTIAKNYEGLKEQYGYLTTA- 641

Query: 121  LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            L        +  +  L    +E L++ +G     +   +F++S +   K L  +      
Sbjct: 642  LTKNLYNGPKTFMEDLAA-HSENLLLGSGTLKSRLLDVYFYSSHEEFIKELKLYD----- 695

Query: 181  RLYVNLQ-----RHRGYDRYRESQVVQLAYTHELP--------LVATNNSLFLSEEDYEA 227
              Y+ +       H   + +   + ++++    +         +VAT +  +L+  D  A
Sbjct: 696  --YIEVPAPQVFSHWIDNEFITQEQLEISLKEIIKEAIKAKKIVVATADVKYLNLYDKVA 753

Query: 228  HDVLM-AVAHSTVVSQKDRPRVTPDHYLKNRSEMV----------SIFSDLPEALENTVE 276
            ++VL+ A                 +  +   ++            +   D     +  + 
Sbjct: 754  YEVLVYAKGIKNSRHYLFNYEQAKNGNIPIPNQDYLTTEEMLEQFAFLKDKQLIEDIVIN 813

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
               + + +      I  +    + +D  K    +L +        +  +         + 
Sbjct: 814  NTNKIADMCDKIQVIKDKLYTPKFEDSGK----KLHDLVYETAYKKYGE------KLPKI 863

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
              +R++ ELN I    FS  + I    IQ +  N   VG  RGS   S  A    IT+++
Sbjct: 864  VEERIEAELNPIIDYGFSVIYWISHILIQKSTDNGFVVG-SRGSVGSSFVATLAGITEVN 922

Query: 397  PLR-----------------------------------------FSLLFERFLNPDRMSM 415
            PL                                            + FE FL      +
Sbjct: 923  PLPPHYLCNKCKYFELSKDEKITSGYDLPNKNCPKCNILLEADGQGIPFETFLGFKADKV 982

Query: 416  PDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRL 475
            PD D++F  D + ++   V+  +G+    +  T  ++  K +   V              
Sbjct: 983  PDIDLNFSGDIQGDIHNEVKRIFGNTHTLKAGTISTVALKTSYGHV-------------- 1028

Query: 476  CKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIG 535
                                  F E  + + S   +  ++ K+E L R    H  GI+I 
Sbjct: 1029 --------------------KAFTEEAMRNYSEPFIDFLAHKIEKLKRTTGQHPGGILII 1068

Query: 536  D--RPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
                 +    P+             + F+   I    ++K D LG    T+++     L 
Sbjct: 1069 PKEFDVYDFTPINYPANEPDSSWLTSHFDFHSIHD-NILKLDLLGHDNPTIIR-----LL 1122

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGI---------------FQLESSGMRQALEGM 635
            ++   +++  IP +D +   L  +   + I                +  +S +RQ L+  
Sbjct: 1123 KKYTNINIDDIPKNDPKVLSLFASTKAMNIKPEQINNETTGALGLPEFGTSFVRQMLKEA 1182

Query: 636  QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
            +P    ++I+L  L     +              +I                VI  ++ +
Sbjct: 1183 KPKSFANLISLAGLSHGENVWLNNAQELVSKKNFEIT--------------DVICCRDDI 1228

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            MQ            A  +   + K      D+ K           + +    +      K
Sbjct: 1229 MQFLLK-KKVEPLFAFNIMEKVRKGKGLTDDEVKR----------LKEYKVADWMIESMK 1277

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE--------------- 800
               Y F K+HA AY ++++  AW K +YP+   A         VE               
Sbjct: 1278 KIKYMFPKAHATAYVLMAWWIAWFKLYYPLAHYACYFATHAKAVEIESMIDIKGGHKVTD 1337

Query: 801  ---------------------KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR---IY 836
                                  + +  Q+       I    +        + DN+   + 
Sbjct: 1338 RLNQLNNIPKNERKVKDDDLIPVFEIAQELYARGFYIANIDLKKSAAHEWIIDNKHGCLI 1397

Query: 837  YSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
                +I G+G   A  ++EA   K F S ED   R     +N+ ++E +           
Sbjct: 1398 PPFKSIDGLGDAAAVSLVEARDAKDFTSKEDVIRRTS---VNKTLIEKMDKLNIFKGLDD 1454

Query: 897  S 897
            +
Sbjct: 1455 T 1455



 Score = 74.8 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 30/71 (42%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L V S  + ++G +   +I+         A+AI D +      EF   A  + ++P+ 
Sbjct: 339 VELHVSSKMNTMDGLIFPKDIVAFAEKLNHSAVAIMDVDGAQGYPEFYNAAKKSKVKPLF 398

Query: 72  GCQLDIDMQDN 82
           G    +  + N
Sbjct: 399 GTAFSVINKSN 409


>gi|225550655|ref|ZP_03771604.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 2 str. ATCC 27814]
 gi|225379809|gb|EEH02171.1| DNA polymerase III, alpha subunit, Gram-positive type [Ureaplasma
            urealyticum serovar 2 str. ATCC 27814]
          Length = 1442

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 156/908 (17%), Positives = 294/908 (32%), Gaps = 189/908 (20%)

Query: 101  LLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            L + T    + + ELVS  +  D       I  S+L     + LI+        +  A +
Sbjct: 607  LYIKTQANVKDMYELVSISHT-DMYYTRPTITTSFLANK-KDKLIISNSVHESDLINALY 664

Query: 161  FNSSQVAEKRLLTFKKL-FGDRLYVNLQRHR--------GYDRYRESQVVQLAYTHELPL 211
              S    +  +  +  +       +  Q+H            +    ++V LA      +
Sbjct: 665  SKSDDEIKSIMQRYDFITLPS---IGSQKHLVYAKKITLENVQKAFKKLVSLALESNKLI 721

Query: 212  VATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
            + +++  +  ++D + +DV +    +T   +    R   + Y+ +   +    +    A 
Sbjct: 722  IYSSSPYYFLKDDKKFYDVYV----NTKGLEGKSHRFANEEYVPDLEYVDQKSAIDELAY 777

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG------LEVRLAQ 325
                 +       + +     P+ I    DD  +  +  L    + G        V    
Sbjct: 778  LEDENL-------INLIINENPQIINSWFDDKIQPLKEGLYAPKMEGVDQKTIDYVYHTA 830

Query: 326  GAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSV 385
              I          QR+  ELN I +  FS  + I    ++ + K+   VG  RGS   S+
Sbjct: 831  KKIYGDNLPTIVEQRIKKELNSIIKHGFSVVYWISHLLVEKSMKDGYGVG-SRGSVGSSL 889

Query: 386  TAYALTITDIDPLR---------------------------------------FSLLFER 406
             A  L ITD++PL                                         ++ FE 
Sbjct: 890  VATFLNITDVNPLAPHYLCPKCKKCEFITNADDGFDLVPKDCEQCQIQMLTDGHNIPFET 949

Query: 407  FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
            FL  D   +PD D++F    +     ++++ +G     +  T G++  K+A   V +  +
Sbjct: 950  FLGFDGDKVPDIDLNFSGVYQAVAHNFIKSIFGETHSYRAGTIGTMAEKSAENAVKKYFE 1009

Query: 467  MPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAS 526
              +S+   +                                   +    QK     R   
Sbjct: 1010 NRFSENQIVRDST-------------------------------VSLYVQKCIDSKRTTG 1038

Query: 527  THAAGIVIGD--RPLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             H  GI+I      +    P      D+      T F  +++    L+KFD LG    T+
Sbjct: 1039 QHPGGIIIVPKEYSIWDFSPYNFPANDINETWKTTHFAFEYLHD-SLLKFDILGHDNPTI 1097

Query: 582  L----------QKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            L           + +       +K+   +   +   +  L  T G + I +  +  +R  
Sbjct: 1098 LKLLKDYTGIDDRDVPMYDPLVMKLFSDISALNIKPSDVLNETTGAISIPEFGTRFVRGM 1157

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIY 691
            L   +P    D+I +  L     +      +               +    K  + VI  
Sbjct: 1158 LVDTKPKSFADLIRISGLSHGESVWLGNAQS---------------LIKSGKLLKDVIAC 1202

Query: 692  QEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFE 751
            ++ +M             A ++   + K  K + + Q            + +      + 
Sbjct: 1203 RDDIMTYLIR-QNVEPKTAFLIMEDVRKGKKIKPEHQSI----------LKELKIPEWYI 1251

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE----------- 800
              A    Y F K+HA AY + +++ AW K ++P+E+ AA  ++  DN +           
Sbjct: 1252 ESANKIKYMFPKAHATAYVMHAWKFAWYKIYHPLEYYAAFFSVRADNFDLFVINQGKEFI 1311

Query: 801  ----------------------------KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD 832
                                         I +   +      +I   S+        V D
Sbjct: 1312 EKTYNDIEQRSKSRDPQKKVSSRELALQPIYEIVIELLARGFKISNISIEQSQATSYVID 1371

Query: 833  ---NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
               N I     AI+G+G T A  I+EA   K F ++ED  +R    K++R  L++L   G
Sbjct: 1372 KQNNAIIPPFVAIQGLGETVANSIIEARNQKAFSTIEDLKNRT---KISRTDLKNLRELG 1428

Query: 890  ALDCFGYS 897
             LD    +
Sbjct: 1429 VLDHLSET 1436



 Score = 55.6 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  H+  S L+  +S   ++D    +Q   I ITD N + S  E ++ +    ++ I G
Sbjct: 324 ELNFHTKMSSLDAIISAQELIDFAVKNQLKTIGITDRNVVQSYPEIAKFSKKQDLKIIYG 383

Query: 73  CQ 74
            +
Sbjct: 384 LE 385


>gi|324327715|gb|ADY22975.1| DNA polymerase III subunit alpha, Gram-positive type [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 970

 Score =  137 bits (346), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 66/366 (18%), Positives = 126/366 (34%), Gaps = 37/366 (10%)

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586 FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135 WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
            L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645 LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190 RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                    +         +V+L  T + P+VAT N  +L+ ED     +L++       
Sbjct: 697 LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLNPEDAMYRKILVSSQGGA-- 754

Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                    P  + +   EM+  FS L E  +   EI    +  +      +    +   
Sbjct: 755 -NPLNRHSLPPVHFRTTDEMLECFSFLGE--DVAREIVVTNTQKIASLIGDVHPVKDDLY 811

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
               +  ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 812 TPKIEGADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--FSLLFERFLNPDRMSMPDF 418
              ++ +  +   VG  RGS   S  A  + IT+++PL   +     +            
Sbjct: 866 HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 419 DIDFCQ 424
             D   
Sbjct: 925 GFDLPD 930



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIAITD     S  E       AGI+ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAITDHAVAQSFPEAYSAGKKAGIKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 421


>gi|218673758|ref|ZP_03523427.1| DNA polymerase III protein, alpha subunit [Rhizobium etli GR56]
          Length = 150

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 69/176 (39%), Gaps = 28/176 (15%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           +  LQV + +S L GA S + +          A+ + D N+L   +   + + A G++ +
Sbjct: 3   YAELQVTTHFSFLRGASSADELFATAKELGIEAVGVVDRNSLAGIVRALEASRATGVRLV 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +GC+LD+                    SI++  +    Y RL  L++        K +  
Sbjct: 63  VGCRLDLQDGM----------------SILVYPTNRAAYSRLTRLLTLGKGRGG-KDNSI 105

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
           + L  +     EGL+ +       +              +L    ++FG+R YV+L
Sbjct: 106 LHLDDVALY-AEGLLGIL------VPDL----PDDTCGVQLRKMSEIFGNRAYVSL 150


>gi|42782909|ref|NP_980156.1| DNA polymerase III, alpha subunit [Bacillus cereus ATCC 10987]
 gi|42738836|gb|AAS42764.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus ATCC 10987]
          Length = 970

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 67/386 (17%), Positives = 130/386 (33%), Gaps = 45/386 (11%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            ++  ++    G         +   Q N  M             + LL ++  G + L +
Sbjct: 574 LVKMLKEVIEKG--------FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYK 625

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  +L +   +  R+  S L++   EG+++ T    G +  A    + +  E+    +
Sbjct: 626 LVSYSHL-NYFYRVPRVPRSLLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFY 683

Query: 175 KKLFGDRLYVNLQ-----RHRGYDRYRESQ---------VVQLAYTHELPLVATNNSLFL 220
                   Y+ +      RH         +         +V+L  T + P+VAT N  +L
Sbjct: 684 D-------YIEVMPPEVLRHLVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYL 736

Query: 221 SEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
             ED     +L++                P  + +   EM+  FS L E  +   EI   
Sbjct: 737 DPEDAMYRKILVSSQGGA---NPLNRHSLPPVHFRTTDEMLECFSFLGE--DVAKEIVVT 791

Query: 281 CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQR 340
            +  +      +    +       +  ++E R+ +         +         +    R
Sbjct: 792 NTQKIASLIGDVHPVKDDLYTPKIEGADDETRDMSYKMARSIYGE------ELPEIVEAR 845

Query: 341 LDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR- 399
           L+ EL  I    F+  +LI    ++ +  +   VG  RGS   S  A  + IT+++PL  
Sbjct: 846 LEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPP 904

Query: 400 -FSLLFERFLNPDRMSMPDFDIDFCQ 424
            +     +              D   
Sbjct: 905 HYVCPKCKQSEFFNDGSVGSGFDLPD 930



 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIAITD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAITDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEAHRLLAEETYVVF 421


>gi|196044660|ref|ZP_03111895.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
 gi|225865799|ref|YP_002751177.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
 gi|229186057|ref|ZP_04313227.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
 gi|196024695|gb|EDX63367.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
 gi|225786021|gb|ACO26238.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
 gi|228597476|gb|EEK55126.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
          Length = 970

 Score =  136 bits (343), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/366 (18%), Positives = 125/366 (34%), Gaps = 37/366 (10%)

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 586 FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 644

Query: 135 WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
            L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 645 LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 696

Query: 190 RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                    +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 697 LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGGA-- 754

Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                    P  + +   EM+  FS L E  +   EI    +  +      +    +   
Sbjct: 755 -NPLNRHSLPPVHFRTTDEMLECFSFLGE--DVAKEIVVTNTQKIASLIGDVHPVKDDLY 811

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
               +  ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 812 TPKIEGADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 865

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--FSLLFERFLNPDRMSMPDF 418
              ++ +  +   VG  RGS   S  A  + IT+++PL   +     +            
Sbjct: 866 HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 924

Query: 419 DIDFCQ 424
             D   
Sbjct: 925 GFDLPD 930



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 332 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 391

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 392 GVEANLVNDGVPIAYNEEHRLLADETYVVF 421


>gi|118479040|ref|YP_896191.1| DNA polymerase III, subunit alpha [Bacillus thuringiensis str. Al
           Hakam]
 gi|118418265|gb|ABK86684.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al
           Hakam]
          Length = 972

 Score =  136 bits (343), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/366 (18%), Positives = 125/366 (34%), Gaps = 37/366 (10%)

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
            +   Q N  M             + LL ++  G + L +LVS  +L +   +  R+  S
Sbjct: 588 FEYHDQLNDSMGQGDAYKRGRPSHMTLLATSDVGLKNLYKLVSYSHL-NYFYRVPRVPRS 646

Query: 135 WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RH 189
            L++   EG+++ T    G +  A    + +  E+    +        Y+ +      RH
Sbjct: 647 LLKKY-REGILVGTACDKGEVFEAMMQKAPEEVEEIAQFYD-------YIEVMPPEVLRH 698

Query: 190 RGYDRYRESQ---------VVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
                    +         +V+L  T + P+VAT N  +L  ED     +L++       
Sbjct: 699 LVERELVRDEGQLKTIISNLVKLGETLDKPVVATGNVHYLDPEDAMYRKILVSSQGGA-- 756

Query: 241 SQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKEC 300
                    P  + +   EM+  FS L E  +   EI    +  +      +    +   
Sbjct: 757 -NPLNRHSLPPVHFRTTDEMLECFSFLGE--DVAKEIVVTNTQKIASLIGDVHPVKDDLY 813

Query: 301 DDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV 360
               +  ++E R+ +         +         +    RL+ EL  I    F+  +LI 
Sbjct: 814 TPKIEGADDETRDMSYKMARSIYGE------ELPEIVEARLEKELKSIIGHGFAVIYLIS 867

Query: 361 ADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--FSLLFERFLNPDRMSMPDF 418
              ++ +  +   VG  RGS   S  A  + IT+++PL   +     +            
Sbjct: 868 HKLVKKSLVDGYLVG-SRGSVGSSFVATMMEITEVNPLPPHYVCPKCKQSEFFNDGSVGS 926

Query: 419 DIDFCQ 424
             D   
Sbjct: 927 GFDLPD 932



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H+  S ++    ++ ++ +       AIA+TD     S  E       AG++ I 
Sbjct: 334 VELHLHTPMSQMDAVTPVSKLVAQAGKWGHEAIAVTDHAVAQSFPEAYSAGKKAGVKVIY 393

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N+          +V 
Sbjct: 394 GVEANLVNDGVPIAYNEEHRLLADETYVVF 423


>gi|265763455|ref|ZP_06092023.1| predicted protein [Bacteroides sp. 2_1_16]
 gi|263256063|gb|EEZ27409.1| predicted protein [Bacteroides sp. 2_1_16]
          Length = 569

 Score =  136 bits (343), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 107/466 (22%), Positives = 181/466 (38%), Gaps = 50/466 (10%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV+L +H+ + LL G+ SL + + K     Q A+ I D N + + L   ++  AAGIQ +
Sbjct: 108 FVNLGIHTPFELLNGSFSLTDWIKKAKYLGQSALGICDYNTMAATLILQKECEAAGIQWV 167

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G  L                         +   + EG Q L+ +   + +  + K    
Sbjct: 168 FGYSLTFTDGIEKIDAK-------------IYCQSQEGLQNLLRIQKCINVDSENK---I 211

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY-VNLQRH 189
           I L  L + G   +I+ +  +S  +         +     L  F   F D  Y ++L   
Sbjct: 212 IDLQDLLKHGAGNIIVFSKYASFWL---------KEIGNNLDRFFDSFDDCFYQLDLSEF 262

Query: 190 RGYDRYRESQVVQLAYTH--------ELPLVATNNSLFLSEEDYEAHDV------LMAVA 235
           +      + +V+     +        +LP V   +  +L ++D +   +        A  
Sbjct: 263 KA--ERIDIKVLDATKCYFDYIYDTGDLPPVLICDCYYLDKDDAKNKIILNKIAEGAAHE 320

Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
            S     KD                  I      A ENTV+IA       ++    +P++
Sbjct: 321 QSDDQYFKDLDEHWTTMSGLFDEHKWDIEDIFNWACENTVKIAEGAKARYEIERNFMPQY 380

Query: 296 IEKECDDIQK-EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
              + +  +         +    G    + +G          YR++LD+E+ V+      
Sbjct: 381 DMADNEKSKYANRHEMFLDLLEDGFNKLVPKG------KEDIYRKQLDYEIYVLESTNNV 434

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            Y L+  D + WA+KN I VG GRGS  G +  Y L IT IDP+++ LLFERFL P+R  
Sbjct: 435 DYMLVQYDTVNWARKNGILVGCGRGSAGGCLVLYLLGITLIDPIKYDLLFERFLLPERAG 494

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
           +   D+    D  D   +Y++    + +  +I     L  K A  D
Sbjct: 495 LYPSDVTIIGDDVD-SNQYIEVTLENHKTYKIDKDAQLLVKRAGMD 539


>gi|299145849|ref|ZP_07038917.1| putative DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_23]
 gi|298516340|gb|EFI40221.1| putative DNA polymerase III, alpha subunit [Bacteroides sp. 3_1_23]
          Length = 569

 Score =  136 bits (341), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 108/466 (23%), Positives = 182/466 (39%), Gaps = 50/466 (10%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV+L +H+ + LL G+ SL + + K     Q A+ I D N + + L   ++  AAGIQ +
Sbjct: 108 FVNLGIHTPFELLNGSFSLTDWIKKAKYLGQSALGICDYNTMAATLILQKECEAAGIQWV 167

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G  L                         +   + EG Q L+ +   + +  + K    
Sbjct: 168 FGYSLTFTDGIEKIDAK-------------IYCQSQEGLQNLLRIQKCINVDSENK---I 211

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY-VNLQRH 189
           I L  L + GT  +I+ +  +S  +         +     L  F   F D  Y ++L   
Sbjct: 212 IDLQDLLKHGTGNIIVFSKYASFWL---------KEIGNNLDRFFDSFDDCFYQLDLSEF 262

Query: 190 RGYDRYRESQVVQLAYTH--------ELPLVATNNSLFLSEEDYEAHDV------LMAVA 235
           +      + +V+     +        +LP V   +  +L ++D +   +        A  
Sbjct: 263 KA--ERIDIKVLDATKCYFDYIYDTGDLPPVLICDCYYLDKDDAKNKIILNKIAEGAAHE 320

Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
            S     KD                  I      A ENTV+IA       ++    +P++
Sbjct: 321 QSDDQYFKDLDEHWTTMSGLFDEHKWDIEDIFNWACENTVKIAEGAKARYEIERNFMPQY 380

Query: 296 IEKECDDIQK-EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
              + +  +         +    G    + +G          YR++LD+E+ V+      
Sbjct: 381 DMADNEKSKYANRHEMFLDLLEDGFNKLVPKG------KEDIYRKQLDYEVYVLESTNNV 434

Query: 355 GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
            Y L+  D + WA+KN I VG GRGS  G +  Y L IT IDP+++ LLFERFL P+R  
Sbjct: 435 DYMLVQYDTVNWARKNGILVGCGRGSAGGCLVLYLLGITLIDPIKYDLLFERFLLPERAG 494

Query: 415 MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
           +   D+    D  D   +Y++    + +  +I     L  K A  D
Sbjct: 495 LYPSDVTIIGDDVD-SNQYIEVTLENHKTYKIDKDAQLLVKRAGMD 539


>gi|270719404|ref|ZP_06223309.1| DNA polymerase III, alpha subunit [Haemophilus influenzae HK1212]
 gi|270315437|gb|EFA27694.1| DNA polymerase III, alpha subunit [Haemophilus influenzae HK1212]
          Length = 116

 Score =  136 bits (341), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 12/128 (9%)

Query: 22  LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
           +++  + +  ++   AA++  A+ +TD  N    + F  +  ++G++PIIG  + +    
Sbjct: 1   MIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLSSGMKPIIGADVKV---- 56

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
                 +          + LL    EGY+ +  L+S+ Y          I   WL E   
Sbjct: 57  ------KSALCGDEYFDLTLLAKNNEGYKNITLLLSKAYQR-GYNDLPYIDQDWLIE-HR 108

Query: 142 EGLIMLTG 149
           EG+I+L+G
Sbjct: 109 EGVIILSG 116


>gi|30171791|gb|AAP20774.1| DNA polymerase III alpha subunit [Peanut witches'-broom phytoplasma]
          Length = 1492

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 124/908 (13%), Positives = 273/908 (30%), Gaps = 138/908 (15%)

Query: 90   KTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTG 149
               F     + ++V   +GY  L  L+S     D   +  R+  S  ++   EGL++ +G
Sbjct: 593  DIKFERPYHVNIIVKNKKGYNNLFHLISDALTRD-FIKKPRLLKSNFEKY-REGLLIGSG 650

Query: 150  GSSGPIDR-AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RHRGYD-------RYR 196
                 +   A + N+  +A+    ++        Y+ +Q     RH  YD          
Sbjct: 651  CFDSNVFNIALYKNNYDLAKAI--SYYD------YIEVQPPQAYRHIIYDLNGDSDFDID 702

Query: 197  ESQVVQL-----------AYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-----HSTVV 240
             S  + +           A      ++AT +  +L   +    +V +           + 
Sbjct: 703  NSYGLSIIKDTIIKIIKEAQRQNKIIIATGDVHYLYPYEKILREVYINAKLIGGGLHRLS 762

Query: 241  SQKDRPRVTPDHYLKNRS-EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
                +              +  +  SD     +  +      +  ++       +     
Sbjct: 763  KYPSKFLPDNYFLTTQEMLDSFNFISDEKLKKDLVINNTHLLNQQIEKFKFFSDQLFNIP 822

Query: 300  CDDIQKEEE-----NELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
             D   K  +     +E+ N     +     +       +  +    +    + +      
Sbjct: 823  DDMFVKNLKISSIRSEILNIVNEKILNLYGKLLHPIIKYRIEQELSVIAPKDNLENNNIV 882

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--FSLLFERFLNPDR 412
              + +    ++ + ++  PVG  RGS   S+ A  L IT+I+PL   +  +  ++     
Sbjct: 883  AIYYLSYLLVKKSTEDGYPVG-SRGSVGASLIANILGITEINPLPPHYRCVVCKYTIMKT 941

Query: 413  MSMPDFDIDFCQDRRDEVIRYVQNKYG------------HERVAQIITFGSL-------Q 453
                    ++    +         +Y              +          +        
Sbjct: 942  SITKTLTSEYQNYLQSWPFVIDIQQYQKKFKTIFSGYDLPKESCPFCNQPFVKDGQDIPF 1001

Query: 454  AKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLE 513
                  D  +   +  +        I N     +    +      +     +        
Sbjct: 1002 ETFLGFDGNKKPDIDLNFSGDYQNQIHNYLRELLGENCVFRAGTIQTVAKQNAYGYIKSF 1061

Query: 514  ISQK---------------LEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRS---DL 553
            + +K               +EG+ R    H  GIVI      +  + P+         + 
Sbjct: 1062 MEEKQIIIRDNERDRRVIMIEGVKRSTGQHPGGIVIIPSGLSIYDVTPIQFPANDVSSEW 1121

Query: 554  PVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ---KSLDFLAQRGVKVDLSLIPFDDHETYH 610
              T F+   +EK  L K D LG    TL++     +              IP DD+  Y 
Sbjct: 1122 KTTHFDYHALEK-NLFKLDILGHDDPTLIKFLMDDVLKNPSEFPFSRFQDIPVDDNLVYE 1180

Query: 611  LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
            +   K        E     QA+       + +++  + L       + +V  +  +    
Sbjct: 1181 IFANKEDEIFANKEECKTSQAIPEFGTPFVRNMLKEIYLKEKKFNFSTLVKVSGLSHGTG 1240

Query: 671  IVSIH--PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            + S +    ++   K    +I  ++ ++          L  +  +   + K  +    ++
Sbjct: 1241 VWSGNAQDQLEDN-KSIFDLITCRDDILNYLISKGLKKLI-SFEIMELVRKGKQNNDRQK 1298

Query: 729  KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
                     ++ ++     ++ ++      Y F K HAAAY +++ + AW K H P+ F 
Sbjct: 1299 WSALSKIMREHNVNDWYIESLQKI-----QYLFPKPHAAAYVLMALRIAWFKVHAPLLFY 1353

Query: 789  AASMTLEMDNVEKIKK-------------------------------FCQDARQFNIQIM 817
                +  +   +                                     ++ +      +
Sbjct: 1354 KGYFSTRVSQFDYENMMLTTDKIAQILKKSNEKEMTSVQKKKLHTLKIAKEMKDRGYNFL 1413

Query: 818  PPSVNTPCVD---FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
            P  +N    +    +V  N +      I G+G   A +I++A  +K F   +DF  RV  
Sbjct: 1414 PIDLNKSEANLFVMEVSSNSLIMPFITIDGLGQVGANNIVKARGEKLFTQ-QDFEKRV-- 1470

Query: 875  KKLNRRVL 882
             KLN+ +L
Sbjct: 1471 -KLNKTIL 1477



 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 35/77 (45%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           +   +H+  S L+   S  + ++        AI  TD + L++  E  +      I+ I+
Sbjct: 312 IEFHIHTKMSNLDAITSAKDYIELAEKWGHEAITFTDHDGLYAFPEIYKYIYNKNIKVIL 371

Query: 72  GCQLDIDMQDNLKMTNQ 88
           G +LD   +  + +TNQ
Sbjct: 372 GVELDFIEEKPIFITNQ 388


>gi|167814069|ref|ZP_02445749.1| error-prone DNA polymerase [Burkholderia pseudomallei 91]
          Length = 217

 Score =  134 bits (337), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 58/183 (31%), Gaps = 20/183 (10%)

Query: 851  RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
            R I  A A  PF S+++   R     L RR LE+L  A A      +R   L        
Sbjct: 1    RRIGAARAAGPFASVDELARRA---CLERRDLEALAAANAFATLAGNRRDALW------- 50

Query: 911  YAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDV 970
                 +         + A      + +           +     + R +G   + HP+ +
Sbjct: 51   -----QAVAAAPERGLLAAAPIDEAVR---PALGAPTEADDVFADYRTIGLTLNRHPVAL 102

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
             +P L    +           G   R   +V ++Q   T KG  + +VT  +        
Sbjct: 103  LRPALDARRLSSAAALRDRRNGRLARACGLVTARQMPGTAKG--VLFVTLEDETGCVNVI 160

Query: 1031 FFP 1033
              P
Sbjct: 161  VRP 163


>gi|330882993|gb|EGH17142.1| error-prone DNA polymerase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 325

 Score =  134 bits (336), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 101/341 (29%), Positives = 163/341 (47%), Gaps = 17/341 (4%)

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                + +L+    +   + D   A   +V IARRC+F L+      P  +  +     +
Sbjct: 1   MFANGERHLRPLDALAEHYPDWLLA--ESVRIARRCTFDLKQLKYEYPHELVPKG----Q 54

Query: 306 EEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQ 365
              + LR     G   R   G           R +++ EL +I   KF  YFL V D ++
Sbjct: 55  TPTSWLRELTERGARKRWPNGL------TPATRAQVEKELALITEKKFDSYFLTVHDIVE 108

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQD 425
           +A+  +I    GRGS A S   YAL IT+++P + +LLFERF++ +R   PD D+DF  D
Sbjct: 109 FARSQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISRERNEPPDIDVDFEHD 167

Query: 426 RRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAH 485
           RR+EVI+Y+  +YG  R A      +     A+RDV + L +P  Q++ L +        
Sbjct: 168 RREEVIQYIFRRYGRGRAALTAVASTYHGSGAMRDVAKVLGLPPDQINALAEAFSRWSDS 227

Query: 486 PVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPM 545
             S + + +           P + R+L ++ +L G  RH S H  G VI + PL  LVP+
Sbjct: 228 LPSPERLREY----GFDADTPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETLVPV 283

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSL 586
                +D  + Q++   ++  GL+K D L L  L+ L+++ 
Sbjct: 284 ENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLSALRRTF 324


>gi|218671864|ref|ZP_03521533.1| DNA polymerase III protein, alpha subunit [Rhizobium etli GR56]
          Length = 243

 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 47/137 (34%), Gaps = 9/137 (6%)

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             SR + L ++  +       +     +   +F   +                   +   +
Sbjct: 7    LSRREALWAVRAL-------DVKSAAEELPLFEQVRHVDLQPEPAAVLPDMLPGEQVIED 59

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
             R L      HP+   +   RK+GI    + +    G  + +A +V+ +Q+  + KG  +
Sbjct: 60   YRYLSLSLKAHPVSFLREEFRKIGITRNVDLLRVPNGKRVTIAGLVLVRQRPGSAKG--V 117

Query: 1016 GWVTFSEPAKEYEANFF 1032
             ++T  +      A  +
Sbjct: 118  IFMTLEDETGVANAIVW 134


>gi|330992109|ref|ZP_08316058.1| Error-prone DNA polymerase 2 [Gluconacetobacter sp. SXCC-1]
 gi|329761130|gb|EGG77625.1| Error-prone DNA polymerase 2 [Gluconacetobacter sp. SXCC-1]
          Length = 374

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 109/388 (28%), Positives = 166/388 (42%), Gaps = 16/388 (4%)

Query: 260 MVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGL 319
           M  +FS  PEA+  T++I  RC F L   A         E     +  +  L      G 
Sbjct: 1   MARLFSRYPEAVARTMDIVGRCRFSLDDLAYR----YPDEVSVPGQTPQQALEALTWEGA 56

Query: 320 EVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRG 379
                 G         D  + L  EL +I RM ++ YFL V   +++A+  +I    GRG
Sbjct: 57  RSVYPDGV------PDDVAETLRHELGLIGRMNYAPYFLTVNSIVRYARSQDIL-CQGRG 109

Query: 380 SGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYG 439
           S A S   Y L IT IDP R SLLFERF++ +R   PD D+DF   RR++VI++V   YG
Sbjct: 110 SAANSAVCYVLGITAIDPARNSLLFERFVSEERGEPPDIDVDFEHARREQVIQWVYEHYG 169

Query: 440 HERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFR 499
            +R A        +AK ALRDVG+ + +P   + R            +  +A+ D     
Sbjct: 170 RDRAALTAVVIRYRAKGALRDVGKVMGLPEDLI-RSLSGHIWGWGRKLDDEALNDT---- 224

Query: 500 EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
              L+D  +   L++++ L G+ RH S H  G V+    L +LVP+         + +++
Sbjct: 225 GIDLSDRRIRLTLDLARCLIGMPRHLSQHPGGFVLTHDRLDELVPIEPASMEQRQIIEWD 284

Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
              I+    +K D L L  LT ++K LD LA+   +         +  ++      G   
Sbjct: 285 KDDIDVLKFMKVDILALGMLTCMKKGLDLLAEHKGQHFTLQTLPAEEASHRGGACAGASE 344

Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALV 647
                  G+  A           +   V
Sbjct: 345 ARIGRRRGVHDAGGRDGQHERHHLARYV 372


>gi|56807373|ref|ZP_00365358.1| COG0587: DNA polymerase III, alpha subunit [Streptococcus pyogenes
           M49 591]
          Length = 360

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 115/375 (30%), Positives = 184/375 (49%), Gaps = 21/375 (5%)

Query: 222 EEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRC 281
           ++D E   +  A+  + +   +     +       +       +  P+AL+N  ++    
Sbjct: 1   QDDMETLHMCHAIRDN-LSLAETPVVESDQELTDCQQLTTFYQTHCPQALQNLEDLVSGI 59

Query: 282 SFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRL 341
            +    +  +          +  K  + EL+    AGL+ +        G   + Y+ RL
Sbjct: 60  YYDFDTNLKLPH-------FNRDKSAKQELQELTEAGLKEK--------GLWKEPYQSRL 104

Query: 342 DFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFS 401
             EL +I+ M F  YFLIV D +++ +     +G GRGS AGS+ AYAL IT IDP++  
Sbjct: 105 LHELVIISDMGFDDYFLIVWDVLRFGRSKGYYMGMGRGSAAGSLVAYALNITGIDPVQHD 164

Query: 402 LLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV 461
           LLFERFLN +R SMPD DID     R E +RYV+N+YG +  AQI+TF +  +K A+RDV
Sbjct: 165 LLFERFLNKERYSMPDIDIDLPDIYRSEFLRYVRNRYGSDHSAQIVTFSTFGSKQAIRDV 224

Query: 462 GRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGL 521
            +   +P  ++  L K I                  FR+   +     +   I++++EG 
Sbjct: 225 FKRFGVPEYELTNLTKKIGF---KDSLATVYEKSISFRQVINSRTEFQKAFAIAKRIEGN 281

Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
            R  S HAAGIV+ D  L+  +P+      D+ +TQ++   +E  GL+K DFLGL+ LT 
Sbjct: 282 PRQTSIHAAGIVMSDDTLTNHIPL--KSGDDMMITQYDAHAVEANGLLKMDFLGLRNLTF 339

Query: 582 LQKSLDFLAQRGVKV 596
           + K  + +A+     
Sbjct: 340 VXKMQEKVAKDYGCQ 354


>gi|213580324|ref|ZP_03362150.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 89

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 11/99 (11%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      
Sbjct: 1   MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           AGI+PI+G   ++  +               +  + +L 
Sbjct: 60  AGIKPIVGADFNVHNE----------LLGDELTHLTVLA 88


>gi|34762810|ref|ZP_00143796.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
            vincentii ATCC 49256]
 gi|27887512|gb|EAA24596.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
            vincentii ATCC 49256]
          Length = 1216

 Score =  132 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 110/628 (17%), Positives = 211/628 (33%), Gaps = 126/628 (20%)

Query: 99   IVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSS-----G 153
            I++LV T  G + +  LVS  ++   G +  RI  S L E   EGLI+ +  ++     G
Sbjct: 612  IMVLVKTQAGLKNMYRLVSEAHIKYFGNKKARIPKSVLVE-NREGLIIGSSLTAHFMNTG 670

Query: 154  PIDRAFFFNSSQVAEKRLLT--FKKLFGDRLYVNLQ------RHRGYD--RYRESQVVQL 203
             +   +  +  +  E+      + +L     Y  L           Y+           L
Sbjct: 671  ELVDLYLRHDLEKLEEAAKFYDYIELLPKSTYNELIEKDGTGALGSYEEVEKMNRYFYDL 730

Query: 204  AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                 + + A++N  +L E +     +L+  + +   S++            +       
Sbjct: 731  GKRLGILVTASSNVHYLDENEDIIRSILLYGSGTVYNSRQYSINNGFYFRTTDEMLKEFS 790

Query: 264  FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
            +    EA E  V    + + +++     +    E       +  E  +R           
Sbjct: 791  YLGENEAKEVVVTNTNKIADMIE---SGIRPIPEGFYPPKMENAEEIVRTMTYEKAYRIY 847

Query: 324  AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
                            RL+ ELN I    FS  +L     ++ +  N   VG  RGS   
Sbjct: 848  GDPL------PDIVSARLERELNAIINNGFSVLYLSAQKLVKKSLDNGYLVG-SRGSVGS 900

Query: 384  SVTAYALTITDIDPLR-----------------------------------------FSL 402
            S+ A+ + IT+++ L                                          +S+
Sbjct: 901  SLVAFMMGITEVNALYPHYICDNPECKYSEFIEREGVGIDLPDKICPKCNAKLRKDGYSI 960

Query: 403  LFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVG 462
             FE F+      +PD D++F  + + E+ RY +  +G E V +  T  +L  K A   V 
Sbjct: 961  PFEVFMGFKGDKVPDIDLNFSGEYQSEIHRYCEELFGKENVFKAGTISTLAEKNAEAYVR 1020

Query: 463  RALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLY 522
            +                              +D+     R     + RL + ++K     
Sbjct: 1021 K----------------------------YFEDNNLNAVRAEIIRLGRLCQGAKKTT--- 1049

Query: 523  RHASTHAAGIVIGDR--PLSQLVPMYRDVRSDL---PVTQFNMKWIEKAGLIKFDFLGLK 577
                 H  G+VI  +   + +  P+ R    +      T ++   +++  L+K D LG  
Sbjct: 1050 ---GQHPGGMVIVPQGNSIYEFCPVQRPANDETSESTTTHYDYHVMDE-QLVKLDILGHD 1105

Query: 578  TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQL 623
              T ++     L Q    +++  IP  D +T  + ++                T GI + 
Sbjct: 1106 DPTTIK-----LLQEYTNIEIKDIPLADKDTLKIFSSTESLGVTPEQIGTEIGTYGIPEF 1160

Query: 624  ESSGMRQALEGMQPDCIEDIIALVSLYR 651
             +S +RQ L   +P    +++ +  L  
Sbjct: 1161 GTSFVRQMLIDTRPTTFAELVRISGLSH 1188



 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AG 66
           V L  H+  S + G   + +I+ +       AIAITD + + S     + A         
Sbjct: 331 VELHAHTKMSEMVGVTDVEDIIKRAKEYGHKAIAITDYSVVHSYPAAFKTAKKLSTDEEK 390

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           ++ I GC++ +   +   +TN           +V 
Sbjct: 391 MKAIFGCEMYMIDDEAPMVTNPKDKKIDDEEFVVF 425


>gi|218513826|ref|ZP_03510666.1| DNA polymerase III subunit alpha [Rhizobium etli 8C-3]
          Length = 276

 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 167/245 (68%), Positives = 213/245 (86%), Gaps = 1/245 (0%)

Query: 444 AQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQAIADDSRFREAR 502
           AQIITFGSLQA+AALRDVGR L+MPY QVD++CKL+PN+PA+P    +AI ++ + +E  
Sbjct: 1   AQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPANPTPLSKAIEEEPKLQEEA 60

Query: 503 LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKW 562
             +P V RLL+I+QK+EGLYRHASTHAAGIVIGDRPLS+LVPMYRD RSD+PVTQFNMKW
Sbjct: 61  AKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKW 120

Query: 563 IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ 622
           +E+AGL+KFDFLGLKTLT+L+ ++DF+A+RG+ VDL+ IP DD +TY +L+   T+G+FQ
Sbjct: 121 VEQAGLVKFDFLGLKTLTVLKVAVDFVAKRGISVDLAAIPLDDKKTYEMLSRGETVGVFQ 180

Query: 623 LESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPML 682
           +ES+GMR+AL GM+PDCIEDIIALV+LYRPGP++NI  YN RK+G E++ SIHP+ID +L
Sbjct: 181 VESAGMRKALIGMKPDCIEDIIALVALYRPGPMENIPTYNARKHGDEELESIHPMIDHLL 240

Query: 683 KETQG 687
           KETQG
Sbjct: 241 KETQG 245


>gi|167465812|ref|ZP_02330901.1| DNA polymerase III PolC [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 694

 Score =  131 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 112/748 (14%), Positives = 229/748 (30%), Gaps = 140/748 (18%)

Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHY 253
                +++++      P++AT N  +L   D    D+ +          KD  +      
Sbjct: 8   EDAVKRIIRIGEKLGKPVIATGNVHYLHPRDKVCRDITINGITGFSPL-KDMKKPDAHFR 66

Query: 254 LKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRN 313
             +       F    +A E  V+     +   +       +      +      + E+R 
Sbjct: 67  TTSDMLEQFQFLGKEKAYEVVVKNTNELADRFEELELFPDKLFTPIIEG----ADEEIRT 122

Query: 314 KAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
           K     +    +         Q    RL+ EL  I +  FS  +LI    ++ + ++   
Sbjct: 123 KCYNTAKQIYGEDL------PQVIIDRLEKELVPIIKYGFSANYLISERLVKKSNEDGYL 176

Query: 374 VGPGRGSGAGSVTAYALTITDIDPLR---------------------------------- 399
           VG  RGS   SV A  L I++++PL                                   
Sbjct: 177 VG-SRGSVGSSVVAMMLGISEVNPLPPHYICSSCKHSEWFMDGSVPSGFDLPDKECPHCG 235

Query: 400 -------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
                    + FE FL      +PD D++F  + +     Y +  +G + V +  T G++
Sbjct: 236 GKLKGEGQDIPFETFLGFKGDKVPDIDLNFSGEYQPVAHNYTKVLFGEKNVFRAGTIGTV 295

Query: 453 QAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLL 512
             K A   V +                            I+                   
Sbjct: 296 AEKTAFGYVKK---------------YEESLGKKWRNAEISR------------------ 322

Query: 513 EISQKLEGLYRHASTHAAGIVIGDRPL--SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
            ++    G+ R    H  GIV+    +    + P+      D   +++     +      
Sbjct: 323 -LASGCTGVKRSTGQHPGGIVVVPDYIEVDDITPVQFPA--DDTKSEWKTTHFDYHAFD- 378

Query: 571 FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGM 628
            + L L  L     ++  + Q    VD   IP +D +   +  +   LG+   Q+ S   
Sbjct: 379 ANLLKLDILGHDDPTMMRMLQDLTGVDPLKIPMNDPKVMSIFNSTDALGVTPEQIRSPVG 438

Query: 629 RQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGV 688
              +  M    +  ++           D + +          + +   LI   +   + V
Sbjct: 439 TFGVPEMGTKFVRQMLQETQP--SSFADLLQISGLSHGTGVWLGNAQELIRKGICSIKTV 496

Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
           I  ++ +M      +G     A  +  ++ K      +     +     K+ +      +
Sbjct: 497 IGCRDDIMLYLIYKAGMDAGLAFKITESVRKGKGLTDE-----WKEEMKKHNVPDWYIES 551

Query: 749 IFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE---------MDNV 799
              +     +Y F K+HAAAY + + +TA+ K ++P+ F A   ++              
Sbjct: 552 CERI-----EYMFPKAHAAAYVISAVRTAYYKLYHPIAFYATYFSVRAEDFELDLLCQGY 606

Query: 800 EKIKKFCQDARQFNIQIMPPS-------------------------VNTPCVDFKVGDNR 834
           + I K   +  +   Q +P                             +    F +  + 
Sbjct: 607 DTILKRLIEIEEKGFQALPKERAMISILEMALEMTARGFSFKPVDLYRSEANKFIIDGDS 666

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPF 862
           +    +A+ G+G   A++I  +     F
Sbjct: 667 LIPPFSAVPGIGENAAKNIAASREGGDF 694


>gi|312796989|ref|YP_004029911.1| DNA polymerase III alpha subunit [Burkholderia rhizoxinica HKI 454]
 gi|312168764|emb|CBW75767.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Burkholderia
           rhizoxinica HKI 454]
          Length = 262

 Score =  131 bits (328), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 76/257 (29%), Positives = 120/257 (46%), Gaps = 8/257 (3%)

Query: 678 IDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKI-KEEMDKQKERFISGA 736
           +   L  T GV I+QEQVMQ+A L +G++  EAD LRRAM     +  +++  ER + G 
Sbjct: 1   MRTALARTLGVPIFQEQVMQVAMLAAGFTAGEADQLRRAMAAWRSQGGLEQYYERIVHGM 60

Query: 737 SKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEM 796
              G  +  A +IF  +  F +YGF +SHAA++A++ Y +AW+K H    FL A +  + 
Sbjct: 61  VTRGYDRAFAESIFAQIRGFGEYGFPESHAASFALLVYVSAWLKCHASAVFLCALLNSQP 120

Query: 797 DNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR----IYYSLAAIKGVGTTTARH 852
                  +  QDAR+  ++++P  V     D  +  +     +   L+ I+G+    A  
Sbjct: 121 MGFYTPSQLVQDARRHGVEVLPVDVTVSDWDSTLQGHILDAPVRLGLSLIRGLAEDAAAR 180

Query: 853 IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
           I  A A +PF  + D   R    +L RR L++L  A AL     +R   L          
Sbjct: 181 IELARAVRPFADVTDLARRA---QLTRRDLQALASANALASLAGNRRAALWHALAAVPDK 237

Query: 913 QWVEKNRTNKHENIFAH 929
             +     +     FA 
Sbjct: 238 DLLRATSDDDATPAFAA 254


>gi|227546868|ref|ZP_03976917.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227212830|gb|EEI80711.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 676

 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 109/554 (19%), Positives = 202/554 (36%), Gaps = 52/554 (9%)

Query: 171 LLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
               + +FG D  ++ +  H    +    + +V+LA     PLVAT++  +   +D   H
Sbjct: 2   AGELQDIFGRDNFFIEIMDHGLSIEHQIRNDLVELAKRINAPLVATSDVHYAKRDDSLKH 61

Query: 229 DVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
           DV + +    V+    R +  + ++YL++ + M S+FSD+PEA +NT+ IA RC     V
Sbjct: 62  DVRICIETGDVMDGPHRFKFESEEYYLRSSAVMRSLFSDVPEACDNTLLIAERCDTGFCV 121

Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                   +  +         +E+    V G            G        R   E+ V
Sbjct: 122 AE---DGSLMPQHVGADGRASSEILQGEVEGWLQT------KYGSIPDSVWNRAQHEMAV 172

Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
           I       Y + VA      ++    VGPG+G  A S+ AYAL I++IDP+ + L F  F
Sbjct: 173 IRETHAEEYLMAVAYCTNRLREEGHLVGPGKGILARSLVAYALGISEIDPIEYDLPFTDF 232

Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            +      P   +   +     V++Y+ ++YG+   A +I +       A++DV      
Sbjct: 233 QD---SVFPTAVLQTERGLSRRVLQYLCDRYGNGYAAAVIAYSRFNDAKAVKDVSHVCGY 289

Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
                D     +        S                         I+  L+      S 
Sbjct: 290 -QRFWDASSAEVWLQDNAKKS-------------------------IADGLKDCIYDCSV 323

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            +  + + ++PL+++  + R          F+ K  ++ GL +    G + L ++Q +L 
Sbjct: 324 RSDVLALCNKPLAEVTSIVRFPSGAESTA-FDAKGCDELGLPRLRIAGSRVLQVVQDALR 382

Query: 588 FLAQRGVKVDLS--LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
           F+    V           D+   Y LL+   T GI  L+  GM+  L   +     ++I 
Sbjct: 383 FIPDCNVPQVWDDSCSSLDESRVYDLLSAGYTAGIPFLD--GMKSELMQQKLTSFAELID 440

Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
           +          +      R     ++  +   +  +   T  +  Y E   +       +
Sbjct: 441 IC----HSRGADRADAVARAMFAYRVAYV-KTLYTIEFMTAMLNSYNEDGARAKLESI-F 494

Query: 706 SLSEADVLRRAMGK 719
                  +   M  
Sbjct: 495 EEMYCLGIHVRMPN 508



 Score = 97.2 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 75/198 (37%), Gaps = 17/198 (8%)

Query: 771 VISYQTAWMKTHYPVEFLAASMT--LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
           + +Y+ A++KT Y +EF+ A +    E     K++   ++     I +  P++N      
Sbjct: 457 MFAYRVAYVKTLYTIEFMTAMLNSYNEDGARAKLESIFEEMYCLGIHVRMPNINQSQYYA 516

Query: 829 KV----GDNR-----IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLN 878
                 GD+      I     AI+G+    A  I+        + S  DF  RV  +  N
Sbjct: 517 TAYSSTGDDEKSAYGIQLGFNAIRGISEQLAEEIVSTRNKGSAYRSFNDFIRRVSLEHCN 576

Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF---- 934
              +  L+ AGA DC    R  L Q  +++ +  +     +++   ++            
Sbjct: 577 AGNVNYLIRAGAFDCVNPCRKALAQCGNDLIEAERQYRAAQSHGQGDLLQDVMDASPCAQ 636

Query: 935 -SDKITLEKFSVENSSVR 951
            S    +   S  + + R
Sbjct: 637 KSTDEVVPNGSDWDQTTR 654


>gi|291516124|emb|CBK69740.1| DNA polymerase III, alpha subunit [Bifidobacterium longum subsp.
           longum F8]
          Length = 676

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 115/585 (19%), Positives = 213/585 (36%), Gaps = 58/585 (9%)

Query: 171 LLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAH 228
               + +FG D  ++ +  H    +    + +V+LA     PLVAT++  +   +D   H
Sbjct: 2   AGELQDIFGRDNFFIEIMDHGLSIEHQIRNDLVELAKRINAPLVATSDVHYAKRDDSLKH 61

Query: 229 DVLMAVAHSTVVSQKDRPRV-TPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQV 287
           DV + +    V+    R +  + ++YL++ + M S+FSD+PEA +NT+ IA RC     V
Sbjct: 62  DVRICIETGDVMDGPHRFKFESEEYYLRSSAVMRSLFSDVPEACDNTLLIAERCDTGFCV 121

Query: 288 HAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNV 347
                   +  +         +E+    V G            G        R   E+ V
Sbjct: 122 AE---DGSLMPQHVGADGRASSEILQGEVEGWLQT------KYGSIPDSVWNRAQHEMAV 172

Query: 348 IARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
           I       Y + VA      ++    VGPG+G  A S+ AYAL I++IDP+ + L F  F
Sbjct: 173 IRETHAEEYLMAVAYCTNRLREEGHLVGPGKGILARSLVAYALGISEIDPIEYDLPFTDF 232

Query: 408 LNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
            +      P   +   +     V++Y+ ++YG+   A +I +       A++DV      
Sbjct: 233 QD---SVFPTAVLQTERGLSRRVLQYLCDRYGNGYAAAVIAYSRFNDAKAVKDVSHVCGY 289

Query: 468 PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
                D     +        S                         I+  L+      S 
Sbjct: 290 -QRFWDASSAEVWLQDNAKKS-------------------------IADGLKDCIYDCSV 323

Query: 528 HAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
            +  + + ++PL+++  + R          F+ K  ++ GL +    G + L ++Q +L 
Sbjct: 324 RSDVLALCNKPLAEVTSIVRFPSGAESTA-FDAKGCDELGLPRLRIAGSRVLQVVQDALR 382

Query: 588 FLAQRGVKVDLS--LIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIA 645
           F+    V           D+   Y LL+   T GI  L+  GM+  L   +     ++I 
Sbjct: 383 FIPDCNVPQAWDDSCSSLDESRVYDLLSAGYTAGIPFLD--GMKSELMQQKLTSFAELID 440

Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
           +          +      R     ++  +   +  +   T  +  Y E   +        
Sbjct: 441 IC----HSRGADRADAVARAMFAYRVAYV-KTLYTIEFMTAMLNSYNEDGARA------- 488

Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            L         +G  ++     Q + + +  S  G  +  A  I 
Sbjct: 489 KLESIFEEIYCLGIHVRMPNINQSQYYATAYSSTGDDEKSAYGIQ 533



 Score = 96.8 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 75/198 (37%), Gaps = 17/198 (8%)

Query: 771 VISYQTAWMKTHYPVEFLAASMT--LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDF 828
           + +Y+ A++KT Y +EF+ A +    E     K++   ++     I +  P++N      
Sbjct: 457 MFAYRVAYVKTLYTIEFMTAMLNSYNEDGARAKLESIFEEIYCLGIHVRMPNINQSQYYA 516

Query: 829 KV----GDNR-----IYYSLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLN 878
                 GD+      I     AI+G+    A  I+        + S  DF  RV  +  N
Sbjct: 517 TAYSSTGDDEKSAYGIQLGFNAIRGISEQLAEEIVSTRNKGSAYRSFNDFIRRVSLEHCN 576

Query: 879 RRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTF---- 934
              +  L+ AGA DC    R  L Q  +++ +  +     +++   ++            
Sbjct: 577 AGNVNYLIRAGAFDCVNPCRKALAQCGNDLIEAERQYRAAQSHGQGDLLQDVMDASPCAQ 636

Query: 935 -SDKITLEKFSVENSSVR 951
            S    +   S  + + R
Sbjct: 637 KSTDEVVPNGSDWDQTTR 654


>gi|330883651|gb|EGH17800.1| error-prone DNA polymerase [Pseudomonas syringae pv. glycinea str.
            race 4]
          Length = 141

 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 43/145 (29%), Gaps = 18/145 (12%)

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
             GAL      R +    +  +                 +F       +         +  
Sbjct: 3    CGALRGLIGHRHRARWEVAGV------------EAQRPLFNDLPSEDTQ----VTLPLPT 46

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
             +     +   LG     HPL + +  L     +  ++ ++      + +A +V+ +Q+ 
Sbjct: 47   VAEDLMADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLSLENDRTLSVAGLVIGRQRP 106

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
             T  G  + +VT  +         +
Sbjct: 107  GTASG--VTFVTLEDEFGMVNVVVW 129


>gi|313798984|gb|ADR82148.1| DNA polymerase III alpha subunit [Mycoplasma sp. 1220]
          Length = 337

 Score =  127 bits (320), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 124/344 (36%), Positives = 195/344 (56%), Gaps = 10/344 (2%)

Query: 421 DFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIP 480
           D   +RRDEVI Y+  KYG E  + I TF +L AK ++RDVGR L +  +++D++ K + 
Sbjct: 1   DIQDNRRDEVINYIVEKYGIENCSLITTFQTLGAKNSIRDVGRVLNINLAEIDKISKTLA 60

Query: 481 NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLS 540
           +  +     +    +SRFR A    P +  L +  + L    R    H AGI+I D P+ 
Sbjct: 61  DGQSIE---EGYLKNSRFRIAIEKYPKLLELSKNIEGL---PRQKGVHPAGIIISDTPII 114

Query: 541 QLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKT---LTLLQKSLDFLAQRGVKVD 597
            ++P+       +      +++IEK GLIK DFLGLKT   +  ++K L++  +      
Sbjct: 115 NIMPIS-VSTEKINQVDLTLEYIEKFGLIKIDFLGLKTLTIIQNIEKDLNYEDRFDYIAS 173

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
            +   + D +T   L +  + GIFQ++S GM++ ++ +  D   D+ A++SL+RPGP++ 
Sbjct: 174 TTPNIYQDSQTLKCLNSTLSQGIFQIDSPGMKKTIKNVGIDTFNDLFAIISLFRPGPMEY 233

Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
           I  Y + K   + I  IHP+ D +++ET G+I+YQEQ+MQIAQ L G S  +AD+LRR +
Sbjct: 234 ISEYASNKKNPDNIELIHPVYDEIVRETFGIIVYQEQIMQIAQKLVGMSFGQADILRRTI 293

Query: 718 GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
            KK   +M++ K  F   A KN I   I+  I+  + KFA YGF
Sbjct: 294 SKKDLIKMEQYKTFFNQLAQKNNIDPEISETIYRKIEKFASYGF 337


>gi|169835547|ref|ZP_02868735.1| DNA polymerase III DnaE [candidate division TM7 single-cell isolate
           TM7a]
          Length = 85

 Score =  127 bits (320), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 39  DQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS 98
               A AITD   L  A+EF ++A  AGI+PIIG +  +  +       Q          
Sbjct: 1   MGMEACAITDHGTLSGAIEFYKEAKKAGIKPIIGMEAYVAARGRADRDPQKDK---ARYH 57

Query: 99  IVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           +VLL    +GYQ L+ L +   L     
Sbjct: 58  LVLLAMNHKGYQNLMRLSTIANLEGMYY 85


>gi|19548816|gb|AAL90805.1| polymerase III subunit alpha [Escherichia coli]
          Length = 223

 Score =  127 bits (319), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 104/223 (46%), Positives = 149/223 (66%), Gaps = 6/223 (2%)

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA
Sbjct: 1   PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 60

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +RDVGR L  PY  VDR+ KLIP DP   +  +A   + +  E   AD  V  L+++++
Sbjct: 61  VIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMAR 119

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL
Sbjct: 120 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 179

Query: 577 KTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHLLTT 614
           +TLT++  +L+ + +R  K      D++ IP DD +++ +L  
Sbjct: 180 RTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQR 222


>gi|237732880|ref|ZP_04563361.1| DNA polymerase III subunit alpha [Mollicutes bacterium D7]
 gi|229384033|gb|EEO34124.1| DNA polymerase III subunit alpha [Coprobacillus sp. D7]
          Length = 101

 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 13/108 (12%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F HL + + YS+L     ++ +++K   +   A+AITD NN+     F +K   AG++PI
Sbjct: 2   FTHLNIKTEYSMLNSIAKIDGLIEKAKRNNMKALAITDINNMHIVYNFEEKCKKAGLKPI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
           +G  L +   +N K+             + LL    +GY+++ ++V+ 
Sbjct: 62  LGVTLVVKYDNNYKL-------------LGLLAKNEQGYKKITKIVTE 96


>gi|313798987|gb|ADR82149.1| DNA polymerase III alpha subunit [Mycoplasma anatis]
          Length = 334

 Score =  126 bits (317), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 124/340 (36%), Positives = 189/340 (55%), Gaps = 10/340 (2%)

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            +RR+EVI Y+ +KYG E  A I TF +L AK ++RDVGR L +  S++D++ K + +  
Sbjct: 2   DNRREEVINYIVDKYGIENCALITTFQTLGAKNSIRDVGRVLNINLSEIDKISKTLADGQ 61

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
           +     +   ++SRFR A    P +  L +  + L    R    H AGI+I D P+  ++
Sbjct: 62  SIE---EGYQNNSRFRIAIEKYPKLLELSKNIEGL---PRQKGVHPAGIIISDTPIIDIM 115

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL---SL 600
           P+       +      + +IEK GLIK DFLGLKTLT++Q     L        +   + 
Sbjct: 116 PIS-FSTEKINQVDLTLDYIEKFGLIKIDFLGLKTLTIIQNIEKDLNYENCFDYIASTTP 174

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
             + D +T   L +  + GIFQ++S GM++ +  +  D   D+ A++SL+RPGP++ I  
Sbjct: 175 NIYSDQKTLMCLNSTLSQGIFQIDSPGMKRTISNVGIDTFNDLFAIISLFRPGPMEYIKE 234

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
           Y   K    KI  IHP+ D +++ET G+I+YQEQ+MQIAQ L G S  +AD+LRR + KK
Sbjct: 235 YALNKKNPNKIELIHPIYDEIVRETFGIIVYQEQIMQIAQKLVGMSFGQADILRRTISKK 294

Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
              +M++ K  F   A  N I    +  I+  + KFA YG
Sbjct: 295 DLLKMEQYKTFFNDLAKNNNIDPHTSETIYNKIEKFASYG 334


>gi|289673963|ref|ZP_06494853.1| error-prone DNA polymerase [Pseudomonas syringae pv. syringae FF5]
          Length = 145

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 61/168 (36%), Gaps = 27/168 (16%)

Query: 47  TDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA 106
           TD   L   +   Q + + G+  I+G ++ I+                  P +VLLV   
Sbjct: 1   TDECTLAGIVRAWQASKSTGLPLIVGSEMHIEHG----------------PKVVLLVENQ 44

Query: 107 EGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
            GY+ L  L++      + K   R+     +      L +      G             
Sbjct: 45  TGYEALCTLITVARRRAK-KGEYRVLREDFEPAPAGLLALWLPNLDGDAQACLAGGR--- 100

Query: 167 AEKRLLTFKKLFGDRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVA 213
                   ++ F +RL++ +  HRG  D  R + ++ LA +  +P VA
Sbjct: 101 ------WLRERFAERLWLGVGLHRGPDDEQRLADLLALAQSLGIPAVA 142


>gi|291529693|emb|CBK95279.1| DNA polymerase III, alpha subunit [Eubacterium rectale M104/1]
          Length = 572

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 69/185 (37%), Gaps = 21/185 (11%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA---LEFSQKACAAGIQ 68
           + L  H+  SL +GA++    +DK      PAIAITD      A   L+F     +  I+
Sbjct: 6   IELHAHTDASLSDGAMTYKEYVDKAIEYGAPAIAITDHG---GAWNWLDFFNYCKSKNIK 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           PI+G +  + +Q  L  +            I+LL     G+Q +   +S       G   
Sbjct: 63  PILGTEGYVGIQIPLSPSKTVSKRM----HILLLAKDYLGFQAISRYISESNRHIDGLGK 118

Query: 129 VRICLSWLQEIG---TEG---LIMLTGGSSGPID-----RAFFFNSSQVAEKRLLTFKKL 177
               +  L +     +EG   +I  +   +G +       AF     +  + R+   +  
Sbjct: 119 PLGSIEMLDKFFGPKSEGYNHVICCSACIAGVLATPFSTNAFIDREIEKIKSRIAESEAT 178

Query: 178 FGDRL 182
             +  
Sbjct: 179 LPEEY 183



 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 110/258 (42%), Gaps = 13/258 (5%)

Query: 165 QVAEKRLLTFKKLFG-DRLYVNLQRHRGY-DRYRESQVVQLAYTHELPLVATNNSLFLSE 222
             A    L+  K+FG D  +  +Q H    ++    ++ +LA    + LVATN+      
Sbjct: 305 DDALNMALSLIKIFGHDNFFAEVQYHGIDLEKEIYPKIAELARELNIKLVATNDVHM--A 362

Query: 223 EDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCS 282
           E  +     +      V  ++ +         +   +     + +   +     +    +
Sbjct: 363 ERSDLEKRTLLRNFGKVSQKEPKWSAPIQGDSELYYKTGDEKAAMLSEILPEDMVNEAMN 422

Query: 283 FILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLD 342
            I  +           +        +  LR     G++              ++   R++
Sbjct: 423 NIELIADQCNLELSNAKHYPHFDNAKELLRKMCEDGIKEFYPGDL-----WTKELADRME 477

Query: 343 FELNVIARMKFSGYFLIVADFIQWAKKNNIP---VGPGRGSGAGSVTAYALTITD-IDPL 398
           +EL  I +M F+ YF  VADFIQ+AK +      +GPGRGSGAGS+      IT+ +DP+
Sbjct: 478 YELETINKMGFNDYFCEVADFIQYAKAHGENSVEIGPGRGSGAGSLVCRLCKITEGLDPI 537

Query: 399 RFSLLFERFLNPDRMSMP 416
            ++LLFERFLNP+R+SMP
Sbjct: 538 EYNLLFERFLNPERVSMP 555


>gi|19548850|gb|AAL90822.1| polymerase III subunit alpha [Escherichia coli]
          Length = 215

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 97/196 (49%), Positives = 136/196 (69%), Gaps = 1/196 (0%)

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKA 456
           PL F LLFERFLNP+R+SMPDFD+DFC ++RD+VI +V + YG + V+QIITFG++ AKA
Sbjct: 1   PLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKA 60

Query: 457 ALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQ 516
            +RDVGR L  PY  VDR+ KLIP DP   +  +A   + +  E   AD  V  L+++++
Sbjct: 61  VIRDVGRVLGHPYGFVDRISKLIPPDPGMTL-AKAFEAEPQLPEIYEADEEVKALIDMAR 119

Query: 517 KLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGL 576
           KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL
Sbjct: 120 KLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGL 179

Query: 577 KTLTLLQKSLDFLAQR 592
           +TLT++  +L+ + +R
Sbjct: 180 RTLTIINWALEMINKR 195


>gi|298251234|ref|ZP_06975037.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297545826|gb|EFH79694.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 94

 Score =  126 bits (315), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           +SP F HL VH+ YSLL+G   +  ++ +        +AITD   ++ AL+F +   A 
Sbjct: 4  TRSPDFAHLHVHTEYSLLDGFSRIKTLVKQTKELGMKHLAITDHGAMYGALKFYKACKAN 63

Query: 66 GIQP 69
           I+P
Sbjct: 64 DIRP 67


>gi|213029070|ref|ZP_03343517.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
          enterica serovar Typhi str. 404ty]
          Length = 73

 Score =  126 bits (315), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          + + P FVHL+VHS YS+++G      ++ K A+   PA+AITD  NL   ++F      
Sbjct: 1  MSE-PRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHG 59

Query: 65 AGIQPIIGCQLDID 78
          AGI+PI+G   ++ 
Sbjct: 60 AGIKPIVGADFNVH 73


>gi|313798997|gb|ADR82150.1| DNA polymerase III alpha subunit [Mycoplasma anatis]
          Length = 334

 Score =  126 bits (315), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 122/340 (35%), Positives = 188/340 (55%), Gaps = 10/340 (2%)

Query: 424 QDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
            +RR+EVI Y+ +KYG E  A I TF +L AK ++RDVGR L +  S++D++ K + +  
Sbjct: 2   DNRREEVINYIVDKYGIENCALITTFQTLGAKNSIRDVGRVLNINLSEIDKISKTLADGQ 61

Query: 484 AHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
           +     +   ++SRFR      P +  L +  + L    R    H AGI+I D P+  ++
Sbjct: 62  SIE---EGYQNNSRFRITIEKYPKLLELSKNIEGL---PRQKGVHPAGIIISDTPIIDIM 115

Query: 544 PMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDL---SL 600
           P+       +      + ++EK GLIK DFLGLKTLT++Q     L        +   + 
Sbjct: 116 PIS-FSTEKINQVDLTLDYVEKFGLIKIDFLGLKTLTIIQNIEKDLNYENCFDYIASTTP 174

Query: 601 IPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV 660
             + D +T   L +  + GIFQ++S GM++ +  +  D   D+ A++SL+RPGP++ I  
Sbjct: 175 NIYSDQKTLMCLNSTLSQGIFQIDSPGMKRTISNVGIDTFNDLFAIISLFRPGPMEYIKE 234

Query: 661 YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK 720
           Y   K    KI  IHP+ D +++ET G+I+YQEQ+MQIAQ L G S  +AD+LRR + KK
Sbjct: 235 YALNKKNPNKIELIHPIYDEIVRETFGIIVYQEQIMQIAQKLVGMSFGQADILRRTISKK 294

Query: 721 IKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
              +M++ K  F   A  N I    +  I+  + KFA YG
Sbjct: 295 DLLKMEQYKTFFNDLAKNNNIDPHTSETIYNKIEKFASYG 334


>gi|241068645|ref|XP_002408496.1| hypothetical protein IscW_ISCW016064 [Ixodes scapularis]
 gi|215492484|gb|EEC02125.1| hypothetical protein IscW_ISCW016064 [Ixodes scapularis]
          Length = 300

 Score =  126 bits (315), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 140/299 (46%), Positives = 200/299 (66%), Gaps = 10/299 (3%)

Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-LQAIADDSRFREARLAD----- 505
           +QAKA ++DV R L +PY   D L +L+P    +PVS  QAI +      A   +     
Sbjct: 1   MQAKAVIKDVARVLSLPYKFADYLTELVPFSAVNPVSLEQAIREVPELANAAKGNGLYNL 60

Query: 506 ----PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
                 +  +L+ S  LEGL+RH+STHAAGIVI    L  +VP+Y+D  SD+ V  ++MK
Sbjct: 61  EGEAELIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDLVDIVPVYKDANSDMLVVGYSMK 120

Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF 621
           + E AGLIKFDFLGL+TLT++      L ++G++VD + + FDD++TY +L     +G+F
Sbjct: 121 YSEIAGLIKFDFLGLQTLTVITDCKKLLKEQGIEVDFNNMTFDDNKTYQMLCKGKGVGVF 180

Query: 622 QLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPM 681
           Q ES GM+ AL  ++PD I D+IAL +LYRPGP++NI  Y   K+  ++   +H L+ P+
Sbjct: 181 QFESIGMKDALRRLKPDSIHDLIALGALYRPGPMENIPTYIACKHKLQQPDYLHELLKPI 240

Query: 682 LKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
           L+ET GV+IYQEQV +IAQ+L+GY+L  AD+LRRAMGKKIK+EM++Q+E F+ GA  N 
Sbjct: 241 LEETYGVVIYQEQVQRIAQVLAGYTLGAADLLRRAMGKKIKKEMEEQEEIFVKGAIANN 299


>gi|167617802|ref|ZP_02386433.1| error-prone DNA polymerase [Burkholderia thailandensis Bt4]
          Length = 217

 Score =  125 bits (314), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 49/194 (25%), Gaps = 42/194 (21%)

Query: 851  RHIMEASADKPFDSLE-----------DFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
            R I  A A  PF S++           D  +   +                      +R 
Sbjct: 1    RRIEAARAAGPFASVDELARRARLERRDLEALAAANAFATLA--------------GNRR 46

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVL 959
              L                      ++ A      + K           +     +   +
Sbjct: 47   DALWQAVAAV------------PQRDLLAGAPIDEAVK---PALGAPTEADDVFADYHTI 91

Query: 960  GFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVT 1019
            G   + HP+ + +P L    +           G   R   +V ++Q   T KG  + +VT
Sbjct: 92   GLTLNRHPVALLRPALDARRLSSAAALRDRRNGQLARACGLVTARQMPGTAKG--VLFVT 149

Query: 1020 FSEPAKEYEANFFP 1033
              +          P
Sbjct: 150  LEDETGCVNVIVRP 163


>gi|167892675|ref|ZP_02480077.1| error-prone DNA polymerase [Burkholderia pseudomallei 7894]
          Length = 208

 Score =  125 bits (314), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 54/174 (31%), Gaps = 20/174 (11%)

Query: 860  KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNR 919
             PF S+++   R     L RR LE+L  A A      +R   L             +   
Sbjct: 1    GPFASVDELARRA---CLERRDLEALAAANAFATLAGNRRDALW------------QAVA 45

Query: 920  TNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMG 979
                  + A      + +           +     + R +G   + HP+ + +P L    
Sbjct: 46   AAPERGLLAAAPIDEAVR---PALGAPTEADDVFADYRTIGLTLNRHPVALLRPALDARR 102

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +           G   R   +V ++Q   T KG  + +VT  +          P
Sbjct: 103  LSSAAALRDRRNGRLARACGLVTARQMPGTAKG--VLFVTLEDETGCVNVIVRP 154


>gi|325973260|ref|YP_004250324.1| DNA polymerase III PolC [Mycoplasma suis str. Illinois]
 gi|323651862|gb|ADX97944.1| DNA polymerase III, PolC [Mycoplasma suis str. Illinois]
          Length = 1438

 Score =  125 bits (313), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 132/893 (14%), Positives = 264/893 (29%), Gaps = 125/893 (13%)

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            +++  +       +  F     +++     +G + L ELVS  +  +      R+    +
Sbjct: 577  VNLNSSFDKDKLLRNYFGNN--VIIFAKNQKGLKSLYELVSIAHT-EHFVDKPRLKWDAI 633

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL---FGDRLYVNLQRHRGYD 193
             E   E LI+L+  ++  +  A   +     +K    F  +           + R    D
Sbjct: 634  -ETRRENLIVLSSPTNSALVNAVLNDEFDTFKKEGEKFDYISLPPPSNFSHEISRGFFED 692

Query: 194  RYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
               E+ +    + A   +  L+A     +  ++  E     + V   ++  ++     + 
Sbjct: 693  GEVETLLKTFYEWADNCQFKLIANYCLKY--QDFKEVEQYKVLVHAKSIGGKRHYLYSSK 750

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                            L    +      +    +   +   L   +  +    +    +E
Sbjct: 751  HGNDVLPDYSWRTTERLISEYDFLSLSEKEKEDLFFTYRYELANSVSPDIFVNK----SE 806

Query: 311  LRNKAVAGLEVRLAQGAIAK------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            L    + G    + +    K          +  +  ++ EL  I    +   +      +
Sbjct: 807  LAIPKIPGALENIKEYIHRKLTAKYGKKLDKQIQATINRELTGIVENGYESVYWCAHLLV 866

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---FSLLFERFLNPDRMSMPDFDI- 420
            Q +K     VG  RGS   S  A+AL I+D++PL    +      FL         FD+ 
Sbjct: 867  QRSKSEGFLVG-SRGSVGSSFLAHALEISDVNPLPPHYYCSQCSYFLMCTNFRESGFDLE 925

Query: 421  ---------DFCQDRRDEVIRYV----QNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
                     +   D ++          +NK     +     +            G+    
Sbjct: 926  TRRCPQCASELSSDGQNIPFETFLGLERNKIPDIDLNFSGQYQQKAHNFLRELFGKEHTF 985

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
                +  + +      A                    D +   L  +S +L  + R    
Sbjct: 986  RAGTISAIAEKTSFALAKNFLQDN-----------QIDFNKGHLHWLSYRLTDVKRTTGQ 1034

Query: 528  HAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            H  GI++  R   +    P+     D+ S+   T F+    +   L KFD LG    T+L
Sbjct: 1035 HPGGIIVIPRGESIYNYTPVNFPANDIESEWLTTHFDKDTFKD-SLFKFDILGQDDPTIL 1093

Query: 583  QKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ-----LESSGMRQALEGMQP 637
                  L      VDL  IPF +     + +    L I Q     L        L     
Sbjct: 1094 A-----LLSNFTGVDLEKIPFKNERLLKMFSDISVLEIPQNKLELLGEVVGTLGLPEFGT 1148

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQV 695
            +   +I+      R        +         K    +    +    K +   +I     
Sbjct: 1149 EKTREIMK---ACRSKIKHFSDLIRISGISHGKNVWKNNIEKLISSQKLSLNEVITCRDD 1205

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            +    L     +  A  +  ++ +      +       +G           +     +  
Sbjct: 1206 IMNYLLEKKIDIQNAFKITESVRRGGGIPPENLPLLRKAG------VPEWYIECANKIT- 1258

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
               Y F K+HA AY ++ ++ A+ K  YPV+F AA +T+   + +       D      +
Sbjct: 1259 ---YIFPKAHATAYVLMCWKIAYFKLEYPVDFYAAYLTITNRHFDVETLTTNDLATIKRK 1315

Query: 816  I---------------------------MPPSVNTPCVDFKVGD---------------N 833
                                        +   + +  + FK+ D                
Sbjct: 1316 YQEGKMLIKSKKSGENIEKTKYLVIIYEVALEMISRGITFKMVDLNESLASTFKPDRKNK 1375

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
             I    ++I  +G  TA+ + +       F + ED   RV       ++LE L
Sbjct: 1376 TILLPFSSIARLGAITAKQLEDERNRGGKFLNREDLEKRVKLNVSILKLLEQL 1428



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            +  +F  L V++ YS  +G  +        A      +A+TD NN+ S  E  +     
Sbjct: 302 SEKKAF-PLNVYTKYSSFDGLFTSAEWAKLSAECGYDVLALTDFNNVHSFPESEKSVKKN 360

Query: 66  GIQPIIGCQLDIDMQD 81
            ++ + G + ++   D
Sbjct: 361 KLKALYGAEFEVVSSD 376


>gi|325989695|ref|YP_004249394.1| DNA polymerase III polC-type [Mycoplasma suis KI3806]
 gi|323574780|emb|CBZ40440.1| DNA polymerase III, polC-type [Mycoplasma suis]
          Length = 1438

 Score =  125 bits (313), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 132/893 (14%), Positives = 264/893 (29%), Gaps = 125/893 (13%)

Query: 77   IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWL 136
            +++  +       +  F     +++     +G + L ELVS  +  +      R+    +
Sbjct: 577  VNLNSSFDKDKLLRNYFGNN--VIIFAKNQKGLKSLYELVSIAHT-EHFVDKPRLKWDAI 633

Query: 137  QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL---FGDRLYVNLQRHRGYD 193
             E   E LI+L+  ++  +  A   +     +K    F  +           + R    D
Sbjct: 634  -ETRRENLIVLSSPTNSALVNAVLNDEFDTFKKEGEKFDYISLPPPSNFSHEISRGFFED 692

Query: 194  RYRESQV---VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTP 250
               E+ +    + A   +  L+A     +  ++  E     + V   ++  ++     + 
Sbjct: 693  GEVETLLKTFYEWADNCQFKLIANYCLKY--QDFKEVEQYKVLVHAKSIGGKRHYLYSSK 750

Query: 251  DHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
                            L    +      +    +   +   L   +  +    +    +E
Sbjct: 751  HGNDVLPDYSWRTTERLIAEYDFLSLSEKEKEDLFFTYRYELANSVSPDIFVNK----SE 806

Query: 311  LRNKAVAGLEVRLAQGAIAK------GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
            L    + G    + +    K          +  +  ++ EL  I    +   +      +
Sbjct: 807  LAIPKIPGALENIKEYIHRKLTAKYGKKLDKQIQATINRELTGIVENGYESVYWCAHLLV 866

Query: 365  QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR---FSLLFERFLNPDRMSMPDFDI- 420
            Q +K     VG  RGS   S  A+AL I+D++PL    +      FL         FD+ 
Sbjct: 867  QRSKSEGFLVG-SRGSVGSSFLAHALEISDVNPLPPHYYCSQCSYFLMCTNFRESGFDLE 925

Query: 421  ---------DFCQDRRDEVIRYV----QNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
                     +   D ++          +NK     +     +            G+    
Sbjct: 926  TRRCPQCASELSSDGQNIPFETFLGLERNKIPDIDLNFSGQYQQKAHNFLRELFGKEHTF 985

Query: 468  PYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHAST 527
                +  + +      A                    D +   L  +S +L  + R    
Sbjct: 986  RAGTISAIAEKTSFALAKNFLQDN-----------QIDFNKGHLHWLSYRLTDVKRTTGQ 1034

Query: 528  HAAGIVIGDR--PLSQLVPMY---RDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLL 582
            H  GI++  R   +    P+     D+ S+   T F+    +   L KFD LG    T+L
Sbjct: 1035 HPGGIIVIPRGESIYNYTPVNFPANDIESEWLTTHFDKDTFKD-SLFKFDILGQDDPTIL 1093

Query: 583  QKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQ-----LESSGMRQALEGMQP 637
                  L      VDL  IPF +     + +    L I Q     L        L     
Sbjct: 1094 A-----LLSNFTGVDLEKIPFKNERLLKMFSDISVLEIPQNKLELLGEVVGTLGLPEFGT 1148

Query: 638  DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK--IVSIHPLIDPMLKETQGVIIYQEQV 695
            +   +I+      R        +         K    +    +    K +   +I     
Sbjct: 1149 EKTREIMK---ACRSKIKHFSDLIRISGISHGKNVWKNNIEKLISSQKLSLNEVITCRDD 1205

Query: 696  MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
            +    L     +  A  +  ++ +      +       +G           +     +  
Sbjct: 1206 IMNYLLEKKIDIQNAFKITESVRRGGGIPPENLPLLRKAG------VPEWYIECANKIT- 1258

Query: 756  FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
               Y F K+HA AY ++ ++ A+ K  YPV+F AA +T+   + +       D      +
Sbjct: 1259 ---YIFPKAHATAYVLMCWKIAYFKLEYPVDFYAAYLTITNRHFDVETLTTNDLATIKRK 1315

Query: 816  I---------------------------MPPSVNTPCVDFKVGD---------------N 833
                                        +   + +  + FK+ D                
Sbjct: 1316 YQEGKMLIKSKKSGENIEKTKYLVIIYEVALEMISRGITFKMVDLNESLASTFKPDRKNK 1375

Query: 834  RIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
             I    ++I  +G  TA+ + +       F + ED   RV       ++LE L
Sbjct: 1376 TILLPFSSIARLGAITAKQLEDERNRGGKFLNREDLEKRVKLNVSILKLLEQL 1428



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            +  +F  L V++ YS  +G  +        A      +A+TD NN+ S  E  +     
Sbjct: 302 SEKKAF-PLNVYTKYSSFDGLFTSAEWAKLSAECGYDVLALTDFNNVHSFPESEKSVKKN 360

Query: 66  GIQPIIGCQLDIDMQD 81
            ++ + G + ++   D
Sbjct: 361 KLKALYGAEFEVVSSD 376


>gi|282852083|ref|ZP_06261441.1| hypothetical protein HMPREF9209_1086 [Lactobacillus gasseri 224-1]
 gi|282556843|gb|EFB62447.1| hypothetical protein HMPREF9209_1086 [Lactobacillus gasseri 224-1]
          Length = 125

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 11/129 (8%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V LQ  SS++LLE    + ++ +        A+A+TD N     + F + A   GI+P++
Sbjct: 4   VSLQNLSSFTLLESPTKVKDLAENAKKKGYSALALTDVNITCGLVNFYKAAKETGIKPLL 63

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY-LLDQGKQSVR 130
           G QL I+          G         ++++    +GY+ ++ L S +  L + G++   
Sbjct: 64  GMQLRIN----------GLIDQANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENV 113

Query: 131 ICLSWLQEI 139
           + L  L+ I
Sbjct: 114 LELEELKNI 122


>gi|325989643|ref|YP_004249342.1| DNA polymerase III subunit alpha [Mycoplasma suis KI3806]
 gi|323574728|emb|CBZ40384.1| DNA polymerase III subunit alpha [Mycoplasma suis]
          Length = 827

 Score =  124 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 135/536 (25%), Positives = 226/536 (42%), Gaps = 52/536 (9%)

Query: 312 RNKAVAGLEVRLAQGAIAKGYHAQ-DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKN 370
           R + +     RL +  +      Q +Y++R   E+N+     +  YF IV +  Q+ +K+
Sbjct: 227 REEILEHCSSRLEKYILEFPKEKQLEYQKRYKREINLFDLKGYWDYFSIVWELTQYIQKS 286

Query: 371 NIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
           NI + PGRGS  GS+  + + +  IDP ++ LL +RFLN     MPD DID    RR E+
Sbjct: 287 NILISPGRGSSCGSLLIFLMGVNQIDPFKYGLLLDRFLNETSERMPDLDIDIEGSRRLEI 346

Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQ 490
           ++++Q+ +G E          ++   ++    + +     + D                 
Sbjct: 347 LKFLQSTFGEEGFIIPSILKRIKNINSIFASLQKVFSEEEEKDSQLMG------------ 394

Query: 491 AIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVR 550
                                     KL  L      H + I+       +    Y+D  
Sbjct: 395 --------------------------KLIDLPFLIQPHPSSIIPIFSTFLE--STYKDDN 426

Query: 551 SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYH 610
           S  PVT           L KFD L  + L  + + +  +        L  I F+D  T++
Sbjct: 427 SVFPVTPLEYSSTSYIHLQKFDLLSSQYLEFISEIIKDIG--FSSQQLFEINFEDKNTWN 484

Query: 611 LLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
           LL    T  +F L+SS ++  +   +   I D+  L+++ RPG   +I  + N K+ K+ 
Sbjct: 485 LLNRGLTYYLFHLDSSYIKSIIPMFELKSISDLAQLLAIIRPGINKHISKFLNYKSPKDS 544

Query: 671 IVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKE 730
                PLI  +L ET+G+I++QEQ+M I   ++G SLS +D  R  + K   EE+   K 
Sbjct: 545 NCP--PLIRELLLETRGIILFQEQIMNIVSKVTGMSLSSSDKYRIILQKNKIEELSSLKR 602

Query: 731 RFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAA 790
            F S A +   +      I+  +  F  Y FNKSHA AYA +S+Q A++K +Y  +F  +
Sbjct: 603 EFFSLAREKKRNNFEINQIWNFINTFGKYSFNKSHAVAYAALSFQAAYLKANYCEKFFIS 662

Query: 791 SMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD---FKVGDNRIYYSLAAIK 843
           ++  E           ++ +    +I   +          F       Y  L  IK
Sbjct: 663 AIKREGLRES----CLEEIKSMGYKIKVINFLNKVSHTGFFDSEKKEFYIGLNGIK 714


>gi|257487762|ref|ZP_05641803.1| error-prone DNA polymerase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 204

 Score =  124 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 85/219 (38%), Gaps = 24/219 (10%)

Query: 722 KEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKT 781
              ++  +ER  +G  KNG     A  IFE +  F  YGF +SHAA++A+++Y + W+K 
Sbjct: 1   HGGLEPHRERLRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKC 60

Query: 782 HYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG---------D 832
           H P  F  A +           +  QDAR+ +I+I P  V     D  +          +
Sbjct: 61  HEPAAFTCALINSWPMGFYSPDQLLQDARRHHIEIRPVDVRYSDWDCSLEPLDHPDSTRN 120

Query: 833 NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
             I   L  ++G     AR I  A + + F    D   R     L+ R  E+L  +GAL 
Sbjct: 121 LAIRLGLRMVRGFREDDARRIETARSKRLFSDATDLSLRA---GLDARAAEALADSGALR 177

Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEK 931
                R +    +  +                 +F    
Sbjct: 178 GLIGHRHRARWEVAGV------------EAQRPLFNDLP 204


>gi|294635139|ref|ZP_06713648.1| DNA polymerase III, alpha subunit [Edwardsiella tarda ATCC 23685]
 gi|291091444|gb|EFE24005.1| DNA polymerase III, alpha subunit [Edwardsiella tarda ATCC 23685]
          Length = 264

 Score =  124 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 54/135 (40%), Gaps = 2/135 (1%)

Query: 900  QLLQSLDNIQKYAQWVEKNRTNKHENIFA-HEKGTFSDKITLEKFSVENSSVRFENEQRV 958
             L+ SL++  K A+   +       ++F    +     + +          +  + E+  
Sbjct: 1    ALMSSLNDALKAAEQHARAEAIGQADMFGVLAEEPEQVEKSYGSVPPWPPQMVLDGERET 60

Query: 959  LGFYFSGHPLDVYKPILRKM-GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            LG Y +GHP+  Y   + +  G    ++   T RG       +V+  +   T++G+RIG 
Sbjct: 61   LGLYLTGHPITQYLKEIERYAGGGRLKDMHPTERGKMTTAVGLVLGARVMTTKRGNRIGM 120

Query: 1018 VTFSEPAKEYEANFF 1032
             T  + +   E   F
Sbjct: 121  CTLDDRSGRLEVMLF 135


>gi|309808831|ref|ZP_07702716.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 01V1-a]
 gi|308167957|gb|EFO70090.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 01V1-a]
          Length = 946

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 114/315 (36%), Gaps = 36/315 (11%)

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + +L     G + + +LVS         +  R  LS L+ +  EGL+  +G   G +  
Sbjct: 599 HMTVLAINKVGLKNMYKLVSLASTK-YFYRLPRTPLSELKRLH-EGLLYGSGCLQGDVFI 656

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-----HRGYD---------RYRESQVVQL 203
           +          ++   +        ++ +Q      H   D         +   + + +L
Sbjct: 657 SMMQKGYDATREKARIYD-------FLEVQPPATYQHLLDDKLIKDKKELQEIITNIYKL 709

Query: 204 AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
                +P+VAT+++ ++ ++D     +L++         K+        Y          
Sbjct: 710 GKELGIPVVATSDAHYIDKKDAIYRKILLSAQ--KANRGKNYELPDLHFYTTQEMLDAFS 767

Query: 264 FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
           F D   A E  ++     +  ++   PI         ++  KE E    +KA        
Sbjct: 768 FLDPKIAEEIVIKNTNMIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHE------ 821

Query: 324 AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAG 383
               +      +  + RL++EL  I    ++  +LI    +  + K+   VG  RGS   
Sbjct: 822 ----LYGNPLPKIVKDRLEYELKSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGSVGS 876

Query: 384 SVTAYALTITDIDPL 398
           S+ A    IT+++PL
Sbjct: 877 SLVATMSGITEVNPL 891



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   S  + +       Q AIAITD  ++ +  E        G++ I 
Sbjct: 321 VELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAFPEAYVAGKKNGLKIIY 380

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 381 GYEANMINDQALLVLNPANMDYRGQEYVIF 410


>gi|325973200|ref|YP_004250264.1| DNA polymerase III subunit alpha [Mycoplasma suis str. Illinois]
 gi|323651802|gb|ADX97884.1| DNA polymerase III, alpha subunit [Mycoplasma suis str. Illinois]
          Length = 826

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 131/511 (25%), Positives = 217/511 (42%), Gaps = 52/511 (10%)

Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
           +Y++R   E+N+     +  YF IV +  Q+ +K+NI + PGRGS  GS+  + + +  I
Sbjct: 252 EYQKRYKREINLFDLKGYWDYFSIVWELTQYIQKSNILISPGRGSSCGSLLIFLMGVNQI 311

Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
           DP ++ LL +RFLN     MPD DID    RR E+++++Q+ +G E          ++  
Sbjct: 312 DPFKYGLLLDRFLNETSERMPDLDIDIEGSRRLEILKFLQSTFGEESFIIPSILKRIKNI 371

Query: 456 AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
            ++            + D                                          
Sbjct: 372 NSIF-AALQKVFSEEEKDSQLIG------------------------------------- 393

Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLG 575
            KL  L      H + I+       +    Y+D  S  PVT           L KFD L 
Sbjct: 394 -KLIDLPFLIQPHPSSIIPIFSTFLE--STYKDDNSVFPVTPLEYSSTSYIHLQKFDLLS 450

Query: 576 LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGM 635
            + L  + + +  +        L  I F+D  T++LL    T  +F L+SS ++  +   
Sbjct: 451 SQYLEFISEIIKDIG--FSSQQLFEINFEDKNTWNLLNRGLTYYLFHLDSSYIKSIIPMF 508

Query: 636 QPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQV 695
           +   I D+  L+++ RPG   +I  + N K+ K+      PLI  +L ET+G+I++QEQ+
Sbjct: 509 ELKSISDLAQLLAIIRPGINKHISKFLNYKSPKDSNCP--PLIRELLLETRGIILFQEQI 566

Query: 696 MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
           M I   ++G SLS +D  R  + K   EE+   K  F S A +   +      I+  +  
Sbjct: 567 MNIVSKVTGMSLSSSDKYRIILQKNKIEELSSLKREFFSLAREKKRNNFEINQIWNFINT 626

Query: 756 FADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQ 815
           F  Y FNKSHA AYA +S+Q A++K +Y  +F  +++  E  +        ++ +    +
Sbjct: 627 FGKYSFNKSHAVAYAALSFQAAYLKANYCEKFFISAIKREGLSES----CLEEIKSMGYK 682

Query: 816 IMPPSVNTPCVD---FKVGDNRIYYSLAAIK 843
           I   +          F       Y  L  IK
Sbjct: 683 IKVINFLNKVSHTGFFDSEKKEFYIGLNGIK 713


>gi|227872420|ref|ZP_03990765.1| possible DNA-directed DNA polymerase III alpha subunit
           [Oribacterium sinus F0268]
 gi|227841738|gb|EEJ52023.1| possible DNA-directed DNA polymerase III alpha subunit
           [Oribacterium sinus F0268]
          Length = 720

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 133/809 (16%), Positives = 248/809 (30%), Gaps = 173/809 (21%)

Query: 203 LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
           +    + P+ AT ++ +  EE+     +++A    T    + R        +      + 
Sbjct: 1   MGEQLKKPVCATCDAHYADEENDVLRRIVLATKGMTDEEGEARLFFRSTTEMLEEFSYLD 60

Query: 263 IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
             +     ++N ++I + C  I              +C  I +  +  LR          
Sbjct: 61  SNTQKQVVIDNPLKIMKMCEPI--------KPVRPDKCPPIIEHSDETLRQICYETAHKI 112

Query: 323 LAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                       +    RL+ ELN I    +S  ++I    +  + ++   VG  RGS  
Sbjct: 113 YGP------KLPEMVENRLETELNSIISNGYSVMYIIAQKLVDKSNEDGYLVG-SRGSVG 165

Query: 383 GSVTAYALTITDIDPLR------------------------------------------- 399
            S  A    IT+++PL                                            
Sbjct: 166 SSFAATMAHITEVNPLPPHYVCPNCYYTDFDSEEVKSYSGMAGYDMPSKNCPHCGTVLNR 225

Query: 400 --FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAA 457
             F + FE FL  D    PD D++F  + +     Y    +G E   +  T G+L  K A
Sbjct: 226 LGFDIPFETFLGFDGDKEPDIDLNFSGEYQARAHAYTGAIFGEENTYKAGTIGTLAEKTA 285

Query: 458 LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQK 517
              + +  +    +  R  +L                                       
Sbjct: 286 YGMIKKFYEER-GEKKRTAELNRLVAGIT------------------------------- 313

Query: 518 LEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDF 573
             G+ R    H  GIV       ++   P+           +T           L+K D 
Sbjct: 314 --GIRRTTGQHPGGIVVLPHGEDINTFTPVQHPANDTESPIITTHFDYHKIDHNLLKLDI 371

Query: 574 LGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALE 633
           LG    T+++K  D          +  IP D  E   L  +   LGI   +  G+     
Sbjct: 372 LGHDDPTMIRKLQDLT----GLDPVKDIPLDSPEVMSLFQSTEALGISPADIQGVELGCL 427

Query: 634 GMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQE 693
           G+     +  + +V   +P  + +++  +   +G +  ++    +      T    I   
Sbjct: 428 GIPEFGTQFAMQMVQDTKPKYLSDLIRISGLSHGTDVYLNNAQDLILSGVTTLREAICCR 487

Query: 694 QVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELL 753
             + +  +  G    E+  +  A  K    + +     +     ++G+ +       ++ 
Sbjct: 488 DDIMVYLMHMGLEPGESFNIMEATRKHKPLKDE-----WCEHMLEHGVPQWYIDACKKI- 541

Query: 754 AKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------- 800
                Y F K+HAAAY +++Y+ A+ K  YP E+  A  T+  D  +             
Sbjct: 542 ----KYMFPKAHAAAYVMMAYRVAYCKVFYPKEYYTAYYTVRADGFDFDKMCFGVEKLRF 597

Query: 801 -------------------KIKKFCQDARQFNIQIMPPSVNTPCV-DFKV-GDNRIYYSL 839
                              +  K C++     IQ  P  +      DF++     I  S 
Sbjct: 598 HIKEYSAREKLSATDQLCLRDMKICEEMYARGIQFAPLDIYKAKAKDFQITEKGEIMPSF 657

Query: 840 AAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRM 899
           + I G+G   A+ + E +    + S +DF  R    K          FA      G    
Sbjct: 658 SCIAGLGEAVAQGLEEGAKYGKYLSKDDFIQRTHCPK---------AFADKFHELG---- 704

Query: 900 QLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
            LL  +               +   ++F 
Sbjct: 705 -LLGDIPL-------------SNQMSLFD 719


>gi|167568661|ref|ZP_02361535.1| error-prone DNA polymerase [Burkholderia oklahomensis C6786]
          Length = 201

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 38/138 (27%), Gaps = 17/138 (12%)

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
              R   L                      ++ A      + K    +    + +     +
Sbjct: 27   GHRRDALWQAVAAV------------PERDLLAAAPIDEAVK---PELGAPSEADDVLAD 71

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
               +G   + HP+ + +P L    +           G   R   +V ++Q   T KG  +
Sbjct: 72   YHTIGLTLNRHPVALLRPELDARRLSSAAALRDRRNGRLARACGLVTARQMPGTAKG--V 129

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +VT  +          P
Sbjct: 130  LFVTLEDETGCVNVIVRP 147


>gi|170703141|ref|ZP_02893955.1| DNA-directed DNA polymerase [Burkholderia ambifaria IOP40-10]
 gi|170131945|gb|EDT00459.1| DNA-directed DNA polymerase [Burkholderia ambifaria IOP40-10]
          Length = 169

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 5/118 (4%)

Query: 916  EKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
            +        ++ A       DK         + +     +    G   + HP+ + +P L
Sbjct: 3    QAVAAAPERDLLAAAPIDEPDK---PALGAPSEADDILADYDTTGLTLNRHPVALLRPAL 59

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            R   +    E      G   R   +V ++Q   T KG  + ++T  +          P
Sbjct: 60   RAQRLSSAAELRDRPDGRLARACGIVTARQMPGTAKG--VMFMTLEDETGCVNVIVRP 115


>gi|253315123|ref|ZP_04838336.1| DNA polymerase III, alpha chain [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
          Length = 107

 Score =  121 bits (304), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 15/118 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H++Y LL  +L + + +    ++   A+AITDTN L+   +F     A  I+PI G 
Sbjct: 5   LNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFGM 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
            + +    N   T             V+L    +G + L +L S   + ++      I
Sbjct: 65  TIYVTNGLNTVET-------------VVLAKNNDGLKDLYQLSSE--IKNEFNGKCFI 107


>gi|461952|sp|P34699|DPO3A_SACEN RecName: Full=DNA polymerase III subunit alpha
          Length = 264

 Score =  121 bits (304), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 9/136 (6%)

Query: 907  NIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLE------KFSVENSSVRFENEQRVLG 960
                    +++ +     ++F        ++ +                     E+ +LG
Sbjct: 1    RAVDAVIGLKRQQALGQFDLFGGGDDAGGEESSSPLAHLQFTPDEWPRKQMLSYEREMLG 60

Query: 961  FYFSGHPLDVYKPILRKMGIKGYEESVATIR---GNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             Y S HPLD  + +L      G  E V   R    + +++A M+   Q++  + G     
Sbjct: 61   LYVSAHPLDGAERLLAPYQDTGIAELVGGEREAGKDQVKIAGMISGIQRRINKNGHPWAI 120

Query: 1018 VTFSEPAKEYEANFFP 1033
            VT  +     E  FFP
Sbjct: 121  VTLEDLDASVEVLFFP 136


>gi|167736964|ref|ZP_02409738.1| error-prone DNA polymerase [Burkholderia pseudomallei 14]
          Length = 186

 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 38/138 (27%), Gaps = 17/138 (12%)

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENE 955
             +R   L             +         + A      + +           +     +
Sbjct: 12   GNRRDALW------------QAVAAAPERGLLAAAPIDEAVR---PALGAPTEADDVFAD 56

Query: 956  QRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRI 1015
             R +G   + HP+ + +P L    +           G   R   +V ++Q   T KG  +
Sbjct: 57   YRTIGLTLNRHPVALLRPALDARRLSSAAALRDRRNGRLARACGLVTARQMPGTAKG--V 114

Query: 1016 GWVTFSEPAKEYEANFFP 1033
             +VT  +          P
Sbjct: 115  LFVTLEDETGCVNVIVRP 132


>gi|291320001|ref|YP_003515259.1| DNA polymerase III subunit alpha [Mycoplasma agalactiae]
 gi|290752330|emb|CBH40301.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae]
          Length = 1459

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 142/957 (14%), Positives = 305/957 (31%), Gaps = 184/957 (19%)

Query: 70   IIGCQLD----IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            II  +L+       +D    T+           +  +    +G ++  EL++   L  + 
Sbjct: 588  II-SELNSKNIFTFEDLGNFTSNDLYAKMHGYEVSTIALNNKGLKKQFELITDC-LTKKF 645

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                         +    +++ +G   G +   +F++S     K L  +        ++ 
Sbjct: 646  INGPITFKEDFVNLDRSDILVGSGTLKGLLIDKYFYSSHDDFIKELKHYD-------FIE 698

Query: 186  LQRHRGYDRYR-------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +   + ++ +               S+++  A  H    +AT +  +L   D E    L+
Sbjct: 699  IPAPQCFEHWIKYGFITTKQLYDGLSEIISEAKKHSKICIATADVKYLDPWDKEIFMSLV 758

Query: 233  AVA----------------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVE 276
                                  +V    R   T +       E  +  +D   A E  ++
Sbjct: 759  YAKGIKNARHYLFDYKKAEEGKLVIPNQRFLTTDEML-----EQFAFLNDKKLAEEIVID 813

Query: 277  IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
              ++ + + +    I       E DD +K    +L +        +  +         + 
Sbjct: 814  NTQKIANMAENIEVIKNGLFTPEFDDSKK----KLHDLVYKNAHAKYGENL------PEL 863

Query: 337  YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
             ++R+D ELN I +  F   + I    ++ +      VG  RGS   S  A  + I++++
Sbjct: 864  IQKRIDSELNPIIKYGFDVIYWISYKLVKLSIDQGFIVG-SRGSIGSSFVASLIGISEVN 922

Query: 397  PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE-RVAQIITFGSLQAK 455
            PL       +  + +  ++P     +     D++      K   + +     TF    A 
Sbjct: 923  PLVPHYCCPKCKHFEIANVPGITSGYDLP--DKICPQCNTKIKGDGQSIPFETFLGFNAD 980

Query: 456  AA----LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL----QAIADDSRFREARLADPS 507
                  L   G    + + ++ +L        A  +S      A      + E    +  
Sbjct: 981  KVPDIDLNFTGEFQGVVHEEIRKLFGESHTFRAGTISKVAEKTAFGYVKSYAEQTRQNIP 1040

Query: 508  VDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRSD---LPVTQFNMKW 562
               +  ++ +++ + R    H  GI+I      +    P+             T F+ K 
Sbjct: 1041 QIFVEFLANRIKDVKRTTGQHPGGIIIIPKQFDIFDFTPINYPANDQSSSWLTTHFDYKA 1100

Query: 563  IEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI-- 620
            I    ++KFD LG    T ++     L ++   +++  +P +D     L ++   +GI  
Sbjct: 1101 IHD-NVLKFDILGHDNPTSIK-----LLEQYTGINIYDVPKNDESVIKLFSSTEPMGIKP 1154

Query: 621  -------------FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNG 667
                          +  +S +RQ L  ++P  + D+I++  L                  
Sbjct: 1155 DQISNEKTGAIGLPEFGTSFVRQMLNDIKPKTVADLISISGLSH--------------GT 1200

Query: 668  KEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDK 727
               I +   L+    ++   V+  ++ +     +  G     +  L   + K      ++
Sbjct: 1201 NVWINNADELVLEKCRKLNEVVCCRDDI-MPMLIAKGIEPLLSFTLMEKVRKGKGLSNEE 1259

Query: 728  QKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEF 787
                                N      +  +Y F K+HA AY  ++   AW K + P+ F
Sbjct: 1260 VGLLEKHN----------VPNWLIKSMQKIEYLFPKAHATAYVTMALWIAWFKLYEPLAF 1309

Query: 788  LAASMTLEMDNVEKIKKF----------------------------------CQDARQFN 813
             A+  T      +                                        ++     
Sbjct: 1310 YASYFTAHSKADDIENMIDKPNGIKVSKRLYELKKTEDRSNKENDLIGVFEVAEELYARG 1369

Query: 814  IQIMPPSVNTPCVDFKVGDNR---IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
              I    ++    +  + D     +    + I+ +G+  A  I+ A A+K F S EDF  
Sbjct: 1370 FYISNVDIDKSQAEKWLIDKERGCLIPPFSTIESLGSVKANDIVNARAEKAFLSKEDFKI 1429

Query: 871  RVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            R     +++ V          D    +RM++L SL++             +    +F
Sbjct: 1430 RT---GVSKTV---------FDTM--NRMKILDSLND-------------SDQLTLF 1459



 Score = 63.7 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   + +  + ++G  + ++ +++    + PA+ I DT+      +   KA  AGI+ I 
Sbjct: 338 VEFHISTKMNTMDGLFNADDFVERAKRWKMPAVGIMDTDGAQGYPKLFNKAKKAGIKAIY 397

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           G       + N  +            S V
Sbjct: 398 GTAFTTINKANEAILGNAPNGNFKDYSYV 426


>gi|218660270|ref|ZP_03516200.1| DNA polymerase III alpha subunit protein [Rhizobium etli IE4771]
          Length = 228

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 2/94 (2%)

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
            T  K        +   + R L      HP+   +  LRK GI    + +    G  + +A
Sbjct: 26   TAAKLPDMLPGEQVIEDYRYLSLSLKAHPVSFLREELRKAGITRNVDLLTVPNGKRVTIA 85

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +V+ +Q+  + KG  + ++T  +      A  +
Sbjct: 86   GLVLVRQRPGSAKG--VIFMTLEDETGVANAIVW 117


>gi|160689454|gb|ABX45585.1| polymerase C [Bacillus pumilus]
          Length = 259

 Score =  119 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 62/171 (36%), Gaps = 9/171 (5%)

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +    Q N  M              +L+     G + L +LVS  ++     +  RI  
Sbjct: 80  DIAYHDQLNENMGQSNAYQRSRPYHAILIAQNETGLKNLFKLVSLSHIH-YFYRVPRIPR 138

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY-----VNL 186
           S L++   EGLI+ +    G +       S    E     +   ++    +Y     + L
Sbjct: 139 SQLEKY-REGLIIGSACDKGEVFEGMMQKSPDEVEDIAAFYDYLEVHPPEVYQHLLQLEL 197

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            R     +   + +V+L      P+VAT N  +L +ED     +L++    
Sbjct: 198 VRDERALKEIITNIVKLGEKLNKPVVATGNVHYLHQEDKIYRKILISSQGG 248


>gi|160689366|gb|ABX45541.1| polymerase C [Bacillus sonorensis]
          Length = 259

 Score =  119 bits (297), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 68/190 (35%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            ++  + A    I       L    Q N  M               LL     G + L +
Sbjct: 69  LVKMLKDAAEKNI-------LY-HDQLNENMGQSNAYQRSRPYHATLLAVNETGLKNLFK 120

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++ +   +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 121 LVSLAHI-NYFYRVPRIPRSQLEK-HREGLLIGSACDKGEVFEGMMQKSPEEVEDIASFY 178

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L     +P+VAT N  +L+ ED   
Sbjct: 179 DYLEVMPPEVYRHLIELELVRDEKALKEIITNITKLGDKLNIPVVATGNVHYLNPEDKIY 238

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 239 RKILISSQGG 248


>gi|213417925|ref|ZP_03351016.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 102

 Score =  119 bits (297), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 1/101 (0%)

Query: 869 CSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFA 928
           C+R D+KKLNRRVLE L+ +GA D  G  R  L+ SL +  K A    K       ++F 
Sbjct: 2   CARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFG 61

Query: 929 -HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPL 968
              +     + +          V  + E+  LG Y +GHP+
Sbjct: 62  VLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPI 102


>gi|302668959|ref|YP_003832784.1| DNA polymerase III-associated phosphoesterase [Butyrivibrio
           proteoclasticus B316]
 gi|302397299|gb|ADL36202.1| DNA polymerase III-associated phosphoesterase [Butyrivibrio
           proteoclasticus B316]
          Length = 510

 Score =  118 bits (295), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 54/161 (33%), Gaps = 23/161 (14%)

Query: 14  LQVHSSY-SLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG------ 66
           L  H+   S  +  L+++  L         ++++TD   ++  L   +            
Sbjct: 39  LHTHTDMGSAKDSILTVDEYLKTAIEMGARSVSVTDHAYMYGVLPLYKACETYNAEHKDA 98

Query: 67  --IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL-- 122
             I+ IIG +  +      K   +      T   ++      +GY+ L  +V++      
Sbjct: 99  DPIKCIIGVEFYVCEDVEDKTKKKH-----TRLHLIAYAKDEKGYKTLCSMVTKSNTRKI 153

Query: 123 -DQGKQSVRICLSWLQEI------GTEGLIMLTGGSSGPID 156
                +   I    L+E       G + +I+ +    G + 
Sbjct: 154 VAGKNEYPCISKKILEEYMGPGTEGHDHIILTSACIGGVVA 194



 Score = 49.4 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 53/153 (34%), Gaps = 4/153 (2%)

Query: 161 FNSSQVAEKRLLTFKKLFG-DRLYVNLQRHR-GYDRYRESQVVQLAYTHELPLVATNNSL 218
            N     +K +L ++ L G    ++ +Q H    ++     + +LA   ++PLVA N++ 
Sbjct: 350 NNVEDAFKKEMLYYENLAGKGNWFIEMQFHGVANEKKYMHVLAKLANELDMPLVAANDAH 409

Query: 219 FLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
             + +   A  ++  +   T  S       + +           ++  L + + +   + 
Sbjct: 410 MSTRDKVMARKIVNGLRFDTKGS--RWQDPSAEEEEMYLKTDAELYQWLCKEISSDDAMN 467

Query: 279 RRCSFILQVHAPILPRFIEKECDDIQKEEENEL 311
              +  L V A        K        +  E 
Sbjct: 468 AMINRDLIVDACNCVLTFGKHYPKFPISDAEEF 500


>gi|149001610|ref|ZP_01826583.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69]
 gi|147760068|gb|EDK67057.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69]
          Length = 1113

 Score =  117 bits (293), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 69/460 (15%), Positives = 137/460 (29%), Gaps = 85/460 (18%)

Query: 82   NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
            N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601  NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142  EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
            EGLI+ +  S G +           A +    +        ++ +               
Sbjct: 659  EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189  -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                  +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712  KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239  VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
                +  P         N       F     A +  +E     + I +    +       
Sbjct: 772  GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFEPVEVVKGDLYTP 831

Query: 299  ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
              D  ++        KA            I           R++ EL  I    F+  +L
Sbjct: 832  FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIYL 881

Query: 359  IVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR------------------- 399
                 +Q + +    VG  RGS   S  A  + IT+++PL                    
Sbjct: 882  ASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPLSPHYVCGQCQYSEFITDGSY 940

Query: 400  ----------------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNK 437
                                    + FE FL  D   +PD D++F  + +      V++ 
Sbjct: 941  GSGFDMPHKDCPNCGHKLSKNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDI 1000

Query: 438  YGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
            +G E   +  T G++ AK A   V +  +  Y +  R  +
Sbjct: 1001 FGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKFYRDAE 1039



 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428


>gi|325522079|gb|EGD00751.1| DNA polymerase III, alpha subunit [Burkholderia sp. TJI49]
          Length = 165

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 2/99 (2%)

Query: 935  SDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNN 994
                 +      +       + R +GF    HPL + +  L    ++  E+      G  
Sbjct: 15   ERDDAVPALPQASEGKEIVTDYRAMGFTLGRHPLALLRDRLTLDRLQSAEQLATLRSGQL 74

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             R   +V  +Q+  T  G  + ++T  +   +     +P
Sbjct: 75   ARACGLVTVRQRPGTANG--VLFMTLEDETGQVNVILWP 111


>gi|237799620|ref|ZP_04588081.1| error-prone DNA polymerase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022475|gb|EGI02532.1| error-prone DNA polymerase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 170

 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 6/112 (5%)

Query: 921  NKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGI 980
                 +F+   G    + T     +   +     +   LG     HPL + +  L     
Sbjct: 10   EAQRPLFSDLPG----EETHVTLPLPTVAEDLVADYASLGTTLGPHPLALLRRQLTAKRF 65

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  ++ +       + LA +V+ +Q+  T  G  + +VT  +         +
Sbjct: 66   RSSQDLLTLENDRTLSLAGLVIGRQRPGTASG--VTFVTLEDEFGMVNVVVW 115


>gi|312978245|ref|ZP_07789989.1| DNA polymerase III, alpha chain, Gram-positive type [Lactobacillus
           crispatus CTV-05]
 gi|310894963|gb|EFQ44033.1| DNA polymerase III, alpha chain, Gram-positive type [Lactobacillus
           crispatus CTV-05]
          Length = 836

 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 79/241 (32%), Gaps = 29/241 (12%)

Query: 95  TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
               + +L     G + L +LVS     D   +  R   S L  +  +GL+  +G   G 
Sbjct: 608 RPSHMTVLAKDQAGLKNLYKLVSIASTKD-FFRIPRTPKSDLARLH-DGLLYGSGCWQGD 665

Query: 155 IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ----------RHRGYDRYRESQVVQ-- 202
           +  A        A ++   +        Y+ +Q               D  +  ++++  
Sbjct: 666 VFIAMMQKGYDEAREKAKFYD-------YLEVQPPATYSQLIADGLIKDEDQLHEIIENI 718

Query: 203 --LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEM 260
             L      P+VAT+++ ++ ++D     +L+A   S     K +P +      +     
Sbjct: 719 IKLGKELNKPVVATSDAHYVDQKDAIYRKILIAAQRSNPSRNKPQPDLHFYSTQEMLDAF 778

Query: 261 VSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLE 320
             +  D   A +  ++   + +  L    PI         +      + E++        
Sbjct: 779 SFLGED--VAKKIVIDNTNKIADELSEIQPIKDGLYPPHIEH----ADEEMKKLTYDKAY 832

Query: 321 V 321
            
Sbjct: 833 E 833



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VH++ S ++   +  + +       Q AIAITD  ++ S  E      A  ++ + 
Sbjct: 333 VELHVHTNMSQVDATNTPTDFIKTAKKFGQKAIAITDHGDVQSFPEAYSSGKALDMKILY 392

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 393 GVEANMIDDHALLVLNPAPMTYEDREFVIF 422


>gi|167579727|ref|ZP_02372601.1| error-prone DNA polymerase [Burkholderia thailandensis TXDOH]
          Length = 162

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 5/112 (4%)

Query: 922  KHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIK 981
               ++ A      + K           +     +   +G   + HP+ + +P L    + 
Sbjct: 2    PQRDLLAAAPIDEAVK---PALGAPTEADDVFADYHTIGLTLNRHPVALLRPALDARRLS 58

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                      G   R   +V ++Q   T KG  + +VT  +          P
Sbjct: 59   SAAALRDRRNGQLARACGLVTARQMPGTAKG--VLFVTLEDETGCVNVIVRP 108


>gi|148377333|ref|YP_001256209.1| DNA polymerase III PolC [Mycoplasma agalactiae PG2]
 gi|148291379|emb|CAL58763.1| DNA polymerase III alpha subunit [Mycoplasma agalactiae PG2]
          Length = 1459

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 142/962 (14%), Positives = 301/962 (31%), Gaps = 194/962 (20%)

Query: 70   IIGCQLD----IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            II  +L+       +D    T+           +  +    +G ++  EL++   L  + 
Sbjct: 588  II-SELNSKNIFTFEDLGNFTSNDLYAKMHGYEVSTIALNNKGLKKQFELITDC-LTKKF 645

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                         +    +++ +G   G +   +F++S     K L  +        ++ 
Sbjct: 646  INGPITFKEDFVNLDRSDVLVGSGTLKGLLIDKYFYSSHDDFIKELKHYD-------FIE 698

Query: 186  L------------------QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
            +                  Q H G        ++  A  H    +AT +  +L   D E 
Sbjct: 699  IPAPQCFEHWIKYGFITTKQLHDGLSE-----IISEAKKHSKICIATADVKYLDPWDKEI 753

Query: 228  HDVLMAVA----------------HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEAL 271
               L+                      +V    R   T +       E  +  +D   A 
Sbjct: 754  FMSLVYAKGIKNARHYLFDYKKAEEGKLVIPNQRFLTTDEML-----EQFAFLNDKKLAE 808

Query: 272  ENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKG 331
            E  ++  ++ + + +    I       E DD +K    +L +        +  +      
Sbjct: 809  EIVIDNTQKIANMAENIEVIKTGLFTPEFDDSKK----KLHDLVYKNAHAKYGENL---- 860

Query: 332  YHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALT 391
               +  ++R+D ELN I +  F   + I    ++ +      VG  RGS   S  A  + 
Sbjct: 861  --PELIQKRIDSELNPIIKYGFDVIYWISYKLVKLSIDQGFIVG-SRGSIGSSFVASLIG 917

Query: 392  ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE-RVAQIITFG 450
            I++++PL       +  + +  ++      +     D+       K   + +     TF 
Sbjct: 918  ISEVNPLVPHYCCPKCKHFEIANVSGITSGYDLP--DKTCPQCHTKIKGDGQSIPFETFL 975

Query: 451  SLQAKAA----LRDVGRALQMPYSQVDRLCKLIPNDPAHPVSL----QAIADDSRFREAR 502
               A       L   G    + + ++ +L        A  +S      A      + E  
Sbjct: 976  GFNADKVPDIDLNFTGEFQGVVHEEILKLFGESHTFRAGTISKVAEKTAFGYVKSYAEQT 1035

Query: 503  LADPSVDRLLEISQKLEGLYRHASTHAAGIVI--GDRPLSQLVPMYRDVRSD---LPVTQ 557
              +     +  ++ +++ + R    H  GI+I      +    P+             T 
Sbjct: 1036 RQNIPQIFVEFLANRIKDVKRTTGQHPGGIIIIPKQFDIFDFTPINYPANDQSSSWLTTH 1095

Query: 558  FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGT 617
            F+ K I    ++KFD LG    T ++     L ++   +++  +P +D     L ++   
Sbjct: 1096 FDYKAIHD-NVLKFDILGHDNPTSIK-----LLEQYTGINIYDVPKNDESVIKLFSSTEP 1149

Query: 618  LGI---------------FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN 662
            +GI                +  +S +RQ L  ++P  + D+I++  L             
Sbjct: 1150 MGIKPDQISNEKTGAIGLPEFGTSFVRQMLNDIKPKTVADLISISGLSH----------- 1198

Query: 663  NRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
                    I +   L+    ++   V+  ++ +     +  G     +  L   + K   
Sbjct: 1199 ---GTNVWINNADELVLEKGRKLNEVVCCRDDI-MPMLIAKGIEPLMSFTLMEKVRKGKG 1254

Query: 723  EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
               ++          +        +   + +     Y F K+HA AY  ++   AW K +
Sbjct: 1255 LSNEEVGL------LEKHNVPDWLIKSMQKIE----YLFPKAHATAYVTMALWIAWFKLY 1304

Query: 783  YPVEFLAASMTLEMDNVEKIKKF----------------------------------CQD 808
             P+ F A+  T      +                                        ++
Sbjct: 1305 EPLAFYASYFTAHSKADDIENMIDKPNGIKVSKRLYELKKTEDRSNKENDLIGVFEVAEE 1364

Query: 809  ARQFNIQIMPPSVNTPCVDFKVGDNR---IYYSLAAIKGVGTTTARHIMEASADKPFDSL 865
                   I    ++    +  + D     +    + I+ +G+  A  I+ A A+K F S 
Sbjct: 1365 LYARGFYISNVDIDKSQAEKWLIDKERGCLIPPFSTIESLGSVKANDIVNARAEKAFLSK 1424

Query: 866  EDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHEN 925
            EDF  R     +++ V          D    +RM++L SL++             +    
Sbjct: 1425 EDFKIRT---GVSKTV---------FDTM--NRMKILDSLND-------------SDQLT 1457

Query: 926  IF 927
            +F
Sbjct: 1458 LF 1459



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   + +  + ++G  + ++ +++    + PA+ I DT+      +   KA  AGI+ I 
Sbjct: 338 VEFHISTKMNTMDGLFNADDFVERAKRWKMPAVGIMDTDGAQGYPKLFNKAKKAGIKAIY 397

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           G       + N  +            S V
Sbjct: 398 GTAFTTINKANEAILGNVPNGNFKDYSYV 426


>gi|194246813|ref|YP_002004452.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
 gi|193807170|emb|CAP18609.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
          Length = 1449

 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 145/908 (15%), Positives = 293/908 (32%), Gaps = 174/908 (19%)

Query: 95   TVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
                I LLV    G   L +L+S+  + +    + ++    L    +  LI  T      
Sbjct: 594  KPFRITLLVKNQIGLTTLYQLLSKAQITN-FNSTTKLTFMDLINHRSNLLIGNTINDGDL 652

Query: 155  IDRAFFFNSSQVAEKRLLTF--KKLFGDRLYVNLQRHRGYD-----RYRESQVVQLAYTH 207
            ++ A   N     E  +  +    +     Y +L  + G +     +    ++++ A   
Sbjct: 653  MEIALNENDFD-LENAINFYDYITIQPITCYQHLMLNLGTNGSKIIQNAIKRIIKFAKKA 711

Query: 208  ELPLVATNNSLFLSEEDYEAHDVL-----MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVS 262
            +  ++AT N  +L  E  + + +      +A     +V  +                 + 
Sbjct: 712  KKLIIATGNVFYLDHEQKKYYAIYTKTALIAKKLHPLVKCEFEDLPNNAFLTTTEMLKMF 771

Query: 263  IFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVR 322
             F +  + +E  V I             ILP+ +    D+       ++ +      ++ 
Sbjct: 772  EFLNDSKLIEEIVIINPNLLNTKIASINILPQKLLTLADNELATSPLKINSINQTLKQII 831

Query: 323  LAQGAIAKGYHAQ-DYRQRLDFELNVIARMKFSGY------FLIVADFIQWAKKNNIPVG 375
            L +     G +   + +QR   E  +I   +   Y      +L+    +Q + ++   VG
Sbjct: 832  LTKMITKYGENWSLELKQRFYQEFQIIINHQSPNYENITVMYLLAYLLVQKSLQDGYLVG 891

Query: 376  PGRGSGAGSVTAYALTITDIDPLR-----------------------------------F 400
              RGS   S  AY + IT+++PL+                                    
Sbjct: 892  -SRGSIGSSFIAYLIGITEVNPLKPHYYCQNCLQTWFNVSELESTIECPRCDLLLFKTGN 950

Query: 401  SLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRD 460
            ++ FE FL  +    PD D++F    +++   Y+Q   G ++V ++ T  ++  K A   
Sbjct: 951  NIPFEAFLGLNGNKTPDIDLNFASKYQEKAQNYLQFILGIKQVFKVSTIQTISNKTAFSY 1010

Query: 461  VGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG 520
            V   L+                                   +       ++  IS++L G
Sbjct: 1011 VYNYLKT----------------------------------QQIKARFHQINLISKQLIG 1036

Query: 521  LYRHASTHAAGIVI--GDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGL 576
              R   TH++G++I   +  + Q+ P    + +        F     E   L K D L  
Sbjct: 1037 TKRTIGTHSSGLIIVPKNNSIYQIAPFQNSIHNSKIWQTISFEYHSFEN-NLSKLDILSH 1095

Query: 577  KTLTLLQKSLDFLAQRGVKVDLSLIP---FDDHETYHLLTTKG--------------TLG 619
            +  TL +   D++ Q   K           +D + + L T                   G
Sbjct: 1096 ENPTLFKMFFDYIKQHPKKFPFKNYHEIPINDSKVFQLFTQTFKNSQGITISTLGIPEFG 1155

Query: 620  IFQLESSGMRQALEGMQPDCIEDIIALVSLYR------PGPIDNIVVYNNRKNGKEKIVS 673
               +    +       QP  +E +I +  L           +D I   N  +N   KI  
Sbjct: 1156 TKFVRKMLVNIYQVENQPFNLEKLIKVSGLSHGTNVWLNNGLDIINQTNEFQNLPVKITF 1215

Query: 674  IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                        + +I  +E +     +++     +A  +   + K  + +   + +  I
Sbjct: 1216 ------------KDIIACREDI-YNYLIINQVPKIKAFEIMEFVRKGKQHQNLTEWQTLI 1262

Query: 734  SGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMT 793
                            +   A    Y F K+HA+AY +++ + A+ K +YP+ F     +
Sbjct: 1263 KPYQNL------IPTWYWKSAFKIKYLFPKAHASAYTLMAIKIAYFKVYYPILFYYGYFS 1316

Query: 794  LEMDNVEK----------------------------------IKKFCQDARQFNIQIMPP 819
             ++                                         +   + +Q N ++ P 
Sbjct: 1317 QKITQFNYQLIIGSIKNLEQEIKTLNQIKQRKLTNLENESLITYELVLEFKQQNFKLQPI 1376

Query: 820  SVNTPCVD--FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
            + N   ++    + +  +   L A+  +G   A  I++    K F    DF  R    K 
Sbjct: 1377 NWNYSAINEFLIINETTLLIPLTALNSLGIEKANLIIQQRQQKLFTDKTDFIKRTKISKT 1436

Query: 878  NRRVLESL 885
                LE+L
Sbjct: 1437 LISQLETL 1444


>gi|156339567|ref|XP_001620200.1| hypothetical protein NEMVEDRAFT_v1g223345 [Nematostella vectensis]
 gi|156204776|gb|EDO28100.1| predicted protein [Nematostella vectensis]
          Length = 308

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 107/302 (35%), Positives = 160/302 (52%), Gaps = 18/302 (5%)

Query: 452 LQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVS-----------------LQAIAD 494
           +  K+A+RD  R L +P  + DR+ KLIP       +                       
Sbjct: 1   MATKSAIRDTARVLDLPLFEADRIAKLIPGMMPSKWNLARFISEKEDDVKKALRSDEFDK 60

Query: 495 DSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLP 554
                            ++ ++ LEG  R+   HA G++I    ++  VP+     SDL 
Sbjct: 61  VKELIAIANEGDLAGETIQQAKILEGSMRNTGIHACGVIITPSDITNFVPVTTAKDSDLY 120

Query: 555 VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-DLSLIPFDDHETYHLLT 613
           VTQF+    E AGL+K DFLGLKTLTL++ ++  +  R     D    P DD +TY L  
Sbjct: 121 VTQFDNSVAESAGLLKMDFLGLKTLTLIKDTVKLVKYRLGIELDPDTFPIDDVKTYELFQ 180

Query: 614 TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS 673
              T+GIFQ ES GM++ ++ ++P    D+IA+ +LYRPGP++ I  +  RKNG+E+I  
Sbjct: 181 RGETVGIFQYESPGMQKYMKDLKPTVFGDLIAMNALYRPGPLEYIPSFVRRKNGEEEIKY 240

Query: 674 IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFI 733
                +  L ET G+ +YQEQVM ++Q L+ ++  EADVLR+AMGKK K+ +DK K +F+
Sbjct: 241 DLEACEEYLGETYGITVYQEQVMLLSQSLADFTKGEADVLRKAMGKKQKDVLDKMKPKFV 300

Query: 734 SG 735
             
Sbjct: 301 EQ 302


>gi|239996958|ref|ZP_04717482.1| DNA polymerase III, alpha subunit [Alteromonas macleodii ATCC
           27126]
          Length = 111

 Score =  115 bits (288), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 41/123 (33%), Gaps = 19/123 (15%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQ 68
           +  L   S+YS L GA S   ++   +     A+AITD  ++   +    +    G  I 
Sbjct: 3   YSELFCQSNYSFLCGASSPAELVTTASFLGYDALAITDECSVAGVVRAFDEIKHQGLPIT 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            I+G     D                   S VLL      Y  L  +++        K  
Sbjct: 63  LIVGSYFVFDD----------------TLSFVLLCPNKAAYSELCRIITNARRRSD-KGE 105

Query: 129 VRI 131
            ++
Sbjct: 106 YQL 108


>gi|227495219|ref|ZP_03925535.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
 gi|226831671|gb|EEH64054.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
          Length = 117

 Score =  115 bits (287), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 8   SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           SP +  L  HS YS L GA    +++D         IA+ D + ++ A++ +Q A    +
Sbjct: 2   SPEYAELHAHSCYSFLHGADQPPHLIDTALKLGLTGIALIDYDGVYGAVQTAQAAKNTPL 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
           + + G +L ++             P   +  + +L +   GY ++ +L+S
Sbjct: 62  KTVFGTELTLND------------PTYGLTHLPVLANNLNGYHQICKLIS 99


>gi|213026945|ref|ZP_03341392.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 98

 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 1/98 (1%)

Query: 89  GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLT 148
            +     +  + +L +   GYQ L  L+S+ Y    G     I   WL E+  EGLI+L+
Sbjct: 1   NELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL-KEGLILLS 59

Query: 149 GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
           GG  G + R     +  + E+ +  ++  F DR ++ L
Sbjct: 60  GGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLEL 97


>gi|313678200|ref|YP_004055940.1| DNA polymerase III subunit alpha [Mycoplasma bovis PG45]
 gi|312950476|gb|ADR25071.1| DNA polymerase III, alpha subunit, Gram-positive type [Mycoplasma
            bovis PG45]
          Length = 1458

 Score =  114 bits (285), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 130/893 (14%), Positives = 275/893 (30%), Gaps = 131/893 (14%)

Query: 70   IIGCQLD----IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            II  +L+        D  K ++           +  +    +G ++  EL++   L  + 
Sbjct: 587  II-SELNAKGIFTFDDLSKYSSNELYAKMHGYEVSTIALNNQGLKKQFELITDC-LTKKY 644

Query: 126  KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                         +    +++ +G   G +   +F++S       L  +        ++ 
Sbjct: 645  INGPITFKEDFASLNRTDILVGSGTLKGLLIDKYFYSSHDDFINELKLYD-------FIE 697

Query: 186  LQRHRGYDRYR-------------ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLM 232
            +   + ++ +               S+++  A  H    +AT +  +L   D E    L+
Sbjct: 698  IPAPQCFEHWIRYGFITTKQLQKGLSEIIYEAKKHSKIFIATADVKYLDPWDQEIFKSLV 757

Query: 233  -AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDL--PEALENTVEIARRCSFILQVHA 289
             A             +   +  L   ++      ++    A     ++            
Sbjct: 758  YAKGIKNARHYLFDYKKAEEGRLVIPNQRFLTTEEMLKQFAFLQDNQLIEELVIDNTQLI 817

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              +   IE     +   E ++ + K    +       A       +  ++R+D ELN I 
Sbjct: 818  ANMAENIEVIKSGLFTPEFDDSKKKLYDLVYKNAY--AKYGEKLPEIIQKRIDSELNPII 875

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
            +  F   + I    ++ +      VG  RGS   S  A  + I++++PL           
Sbjct: 876  KYGFDVIYWISYKLVKLSIDQGFIVG-SRGSIGSSFVASLIGISEVNPLIPHYCCPNCKY 934

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHE-RVAQIITFGSLQAKAA----LRDVGRA 464
             +  + P     +     D+           + +     TF    A       L   G  
Sbjct: 935  FEVANAPGVTSGYDLP--DKPCPECNTLIKGDGQSIPFETFLGFNADKVPDIDLNFTGEF 992

Query: 465  LQMPYSQVDRLCKLIPNDPAHPVSL----QAIADDSRFREARLADPSVDRLLEISQKLEG 520
              + + ++ RL        A  +S      A      + E          +  ++ +++ 
Sbjct: 993  QGVVHEEIRRLFGKSHTFRAGTISKVAEKTAFGYVKSYAEQTRQTIPQIFVEFLANRIKD 1052

Query: 521  LYRHASTHAAGIVI--GDRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLG 575
            + R    H  GI+I      +    P+             T F+ K I    ++KFD LG
Sbjct: 1053 VKRTTGQHPGGIIIIPKQFDIFDFTPINYPANDQSSSWLTTHFDYKAIHD-NVLKFDILG 1111

Query: 576  LKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGI--------------- 620
                T ++     L ++   +++  +P +D     L ++   +GI               
Sbjct: 1112 HDNPTSIK-----LLEQYTGINIYDVPKNDQNVIKLFSSTEPMGISPEQISNEKTGAIGL 1166

Query: 621  FQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDP 680
             +  +S +RQ L  ++P  + D+I++  L                     I +   L+  
Sbjct: 1167 PEFGTSFVRQMLNDIKPKTVADLISISGLSH--------------GTNVWINNADELVLE 1212

Query: 681  MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
              ++   V+  ++ +     +  G     +  L   + K      D+ +           
Sbjct: 1213 KGRKLNEVVCCRDDI-MPMLIAKGIEPLMSFTLMEKVRKGKGLSNDEVELLEKHN----- 1266

Query: 741  ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
                   N      +  +Y F K+HA AY  ++   AW K + P+ F A+  T      +
Sbjct: 1267 -----VPNWLIKSMQKIEYLFPKAHATAYVTMALWIAWFKLYEPLAFYASYFTAHSKADD 1321

Query: 801  KIKKF----------------------------------CQDARQFNIQIMPPSVNTPCV 826
                                                    ++       I    ++    
Sbjct: 1322 IKNMIDKPNGIKVSKRLYELKKTEDRSNKENDLIGVFEVAEELYARGFYISNVDIDKSQA 1381

Query: 827  DFKV---GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
            +  +       +    + I+ +GT  A  I+ A  +KPF S EDF +R    K
Sbjct: 1382 EKWLIDKEKGCLIPPFSTIESLGTVKANDIVNAREEKPFLSKEDFKTRTGVSK 1434



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 36/89 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   + +  + ++G  + ++ +++    + PAI I DT+      +   KA  +GI+ I 
Sbjct: 337 VEFHISTKMNTMDGLFNADDFVERAKRWKMPAIGIMDTDGAQGYPKLFNKAKKSGIKAIY 396

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           G       + N  +  +         S V
Sbjct: 397 GTAFTTINKANEAILGEIPEGSFKDYSYV 425


>gi|77414701|ref|ZP_00790833.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae 515]
 gi|77159245|gb|EAO70424.1| DNA polymerase III, alpha subunit, Gram-positive type [Streptococcus
            agalactiae 515]
          Length = 1036

 Score =  114 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 69/454 (15%), Positives = 136/454 (29%), Gaps = 83/454 (18%)

Query: 58   FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS 117
            F ++A            +   M+ N K+  +       +    + V    G + + +LVS
Sbjct: 589  FLKEARENR-------DVTNLMELNTKLVAEDSYKKARIKHATIYVQNQVGLKNIFKLVS 641

Query: 118  RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
               +    +   RI  S L +   EGL++ T  S G +  A   N    A      +   
Sbjct: 642  LSNVK-YFEGVARIPRSVL-DAHREGLLLGTACSDGEVFDALLSNGIDAAVTLAKYYD-- 697

Query: 178  FGDRLYVNLQ----------RHRGYDR----YRESQVVQLAYTHELPLVATNNSLFLSEE 223
                 ++ +           R    D          ++++    + P++AT N  ++  E
Sbjct: 698  -----FIEVMPPAIYRPLVVRDLIKDEVGIQQIIRDLIEVGRRLDKPVLATGNVHYIEPE 752

Query: 224  DYEAHDVLM-----AVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIA 278
            D    ++++         +  + + +  +  P      R+    +        +   EI 
Sbjct: 753  DEIYREIIVRSLGQGAMINRTIGRGEDAQPAPLPKAHFRTTNEMLDEFAFLGKDLAYEIV 812

Query: 279  RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
               +         +               E  +     A                     
Sbjct: 813  VTNTNTFADRFEDVEVVKGDLYTPFVDRAEERVAELTYAKAFEIYGNPL------PDIID 866

Query: 339  QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
             R++ EL  I    F+  +L     +Q + +    VG  RGS   S  A  + IT+++P+
Sbjct: 867  LRIEKELASILGNGFAVIYLASQMLVQRSNERGYLVG-SRGSVGSSFVATMIGITEVNPM 925

Query: 399  R-----------------------------------------FSLLFERFLNPDRMSMPD 417
                                                        + FE FL  D   +PD
Sbjct: 926  PPHYVCPNCQHSEFITDGSCGSGYDLPNKNCPKCGTLYKKDGQDIPFETFLGFDGDKVPD 985

Query: 418  FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
             D++F  D +      V++ +G E   +  T G+
Sbjct: 986  IDLNFSGDDQPSAHLDVRDIFGEEYAFRAGTVGT 1019



 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++ +++D  A    PAIAITD  N+ S      +A  AGI+ I 
Sbjct: 344 VEFHAHTNMSTMDALPTVESLIDTAAKWGHPAIAITDHANVQSFPHGYHRAKKAGIKAIF 403

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 404 GLEANIVEDKVPISYNEVDMNLHEATYVVF 433


>gi|332148548|dbj|BAK20123.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 248

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 65  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 116

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 117 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 174

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 175 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 234

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 235 RKILISSQGG 244


>gi|332148506|dbj|BAK20102.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 247

 Score =  113 bits (283), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 65  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 116

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 117 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 174

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 175 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 234

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 235 RKILISSQGG 244


>gi|332148500|dbj|BAK20099.1| DNA polymerase III PolC [Bacillus subtilis]
 gi|332148512|dbj|BAK20105.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 250

 Score =  113 bits (283), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 65  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 116

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 117 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 174

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 175 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 234

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 235 RKILISSQGG 244


>gi|332148508|dbj|BAK20103.1| DNA polymerase III PolC [Bacillus subtilis]
 gi|332148510|dbj|BAK20104.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 256

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 65  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 116

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 117 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 174

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 175 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 234

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 235 RKILISSQGG 244


>gi|332148520|dbj|BAK20109.1| DNA polymerase III PolC [Bacillus subtilis]
 gi|332148532|dbj|BAK20115.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 257

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 66  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 117

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 118 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 175

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 176 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 235

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 236 RKILISSQGG 245


>gi|332148552|dbj|BAK20125.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 256

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 65  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 116

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 117 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 174

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 175 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 234

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 235 RKILISSQGG 244


>gi|332148524|dbj|BAK20111.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 256

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 66  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 117

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 118 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 175

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 176 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 235

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 236 RKILISSQGG 245


>gi|332148502|dbj|BAK20100.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 254

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 65  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 116

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 117 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 174

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 175 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 234

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 235 RKILISSQGG 244


>gi|332148538|dbj|BAK20118.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 256

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 66  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 117

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 118 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 175

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 176 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 235

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 236 RKILISSQGG 245


>gi|332148516|dbj|BAK20107.1| DNA polymerase III PolC [Bacillus subtilis]
 gi|332148526|dbj|BAK20112.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 255

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 66  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 117

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 118 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 175

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 176 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 235

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 236 RKILISSQGG 245


>gi|332148522|dbj|BAK20110.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 252

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 61  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 112

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 113 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 170

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 171 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 230

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 231 RKILISSQGG 240


>gi|332148504|dbj|BAK20101.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 253

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 64  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 115

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 116 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 173

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 174 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 233

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 234 RKILISSQGG 243


>gi|332148528|dbj|BAK20113.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 253

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 63  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 114

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 115 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 172

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 173 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 232

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 233 RKILISSQGG 242


>gi|160689348|gb|ABX45532.1| polymerase C [Bacillus subtilis subsp. spizizenii]
          Length = 259

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 69  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 120

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 121 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDVAAFY 178

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 179 DYLEVQPPEVYRHLLELELVRDEKSLKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 238

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 239 RKILISSQGG 248


>gi|160689324|gb|ABX45520.1| polymerase C [Bacillus subtilis]
 gi|160689326|gb|ABX45521.1| polymerase C [Bacillus subtilis]
 gi|160689344|gb|ABX45530.1| polymerase C [Bacillus subtilis]
 gi|160689364|gb|ABX45540.1| polymerase C [Bacillus subtilis]
 gi|160689372|gb|ABX45544.1| polymerase C [Bacillus subtilis]
 gi|160689380|gb|ABX45548.1| polymerase C [Bacillus subtilis]
 gi|160689382|gb|ABX45549.1| polymerase C [Bacillus subtilis]
 gi|160689384|gb|ABX45550.1| polymerase C [Bacillus subtilis]
 gi|160689386|gb|ABX45551.1| polymerase C [Bacillus subtilis]
 gi|160689400|gb|ABX45558.1| polymerase C [Bacillus subtilis]
 gi|160689402|gb|ABX45559.1| polymerase C [Bacillus subtilis]
 gi|160689416|gb|ABX45566.1| polymerase C [Bacillus subtilis]
 gi|160689418|gb|ABX45567.1| polymerase C [Bacillus subtilis]
 gi|160689420|gb|ABX45568.1| polymerase C [Bacillus subtilis]
 gi|160689424|gb|ABX45570.1| polymerase C [Bacillus subtilis]
 gi|160689438|gb|ABX45577.1| polymerase C [Bacillus subtilis]
 gi|160689442|gb|ABX45579.1| polymerase C [Bacillus subtilis]
 gi|160689448|gb|ABX45582.1| polymerase C [Bacillus subtilis]
 gi|160689456|gb|ABX45586.1| polymerase C [Bacillus subtilis]
 gi|160689458|gb|ABX45587.1| polymerase C [Bacillus subtilis]
          Length = 259

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 69  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 120

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 121 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 178

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 179 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 238

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 239 RKILISSQGG 248


>gi|332148518|dbj|BAK20108.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 251

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 61  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 112

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 113 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 170

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 171 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 230

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 231 RKILISSQGG 240


>gi|332148514|dbj|BAK20106.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 252

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 62  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 113

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 114 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 171

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 172 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 231

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 232 RKILISSQGG 241


>gi|160689328|gb|ABX45522.1| polymerase C [Bacillus subtilis]
 gi|160689330|gb|ABX45523.1| polymerase C [Bacillus subtilis]
 gi|160689334|gb|ABX45525.1| polymerase C [Bacillus subtilis]
 gi|160689342|gb|ABX45529.1| polymerase C [Bacillus subtilis]
 gi|160689374|gb|ABX45545.1| polymerase C [Bacillus subtilis]
 gi|160689376|gb|ABX45546.1| polymerase C [Bacillus subtilis]
 gi|160689378|gb|ABX45547.1| polymerase C [Bacillus subtilis]
 gi|160689404|gb|ABX45560.1| polymerase C [Bacillus subtilis]
 gi|160689422|gb|ABX45569.1| polymerase C [Bacillus subtilis]
 gi|160689426|gb|ABX45571.1| polymerase C [Bacillus subtilis]
 gi|160689428|gb|ABX45572.1| polymerase C [Bacillus subtilis]
 gi|160689430|gb|ABX45573.1| polymerase C [Bacillus subtilis]
 gi|160689436|gb|ABX45576.1| polymerase C [Bacillus subtilis]
 gi|160689440|gb|ABX45578.1| polymerase C [Bacillus subtilis]
 gi|160689450|gb|ABX45583.1| polymerase C [Bacillus subtilis]
 gi|160689460|gb|ABX45588.1| polymerase C [Bacillus subtilis]
          Length = 259

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 69  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 120

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 121 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 178

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 179 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 238

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 239 RKILISSQGG 248


>gi|332148546|dbj|BAK20122.1| DNA polymerase III PolC [Bacillus amyloliquefaciens]
          Length = 233

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 54  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 105

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 106 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 163

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 164 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 223

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 224 RKILISSQGG 233


>gi|302533608|ref|ZP_07285950.1| DNA polymerase III alpha subunit [Streptomyces sp. C]
 gi|302442503|gb|EFL14319.1| DNA polymerase III alpha subunit [Streptomyces sp. C]
          Length = 148

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 18/118 (15%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            + P F HL   S +S+  GA     + ++ A     A+A+TD ++L  A+ F++ A AA
Sbjct: 29  PRVPGFTHLHTVSGFSVRYGASHPERLAERAAERGMDALALTDRDSLAGAVRFAKAAAAA 88

Query: 66  GIQPIIGCQLDIDMQD------------------NLKMTNQGKTPFPTVPSIVLLVST 105
           GI+P+ G  L +                             G     + P  + L   
Sbjct: 89  GIRPLFGVDLAVPPAGSPGARPGASGPAGEASYRRRTPVRGGAFVDESAPRALFLARD 146


>gi|332148534|dbj|BAK20116.1| DNA polymerase III PolC [Bacillus amyloliquefaciens]
          Length = 230

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 50  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 101

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 102 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 159

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 160 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 219

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 220 RKILISSQGG 229


>gi|160689346|gb|ABX45531.1| polymerase C [Bacillus vallismortis]
          Length = 259

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 69  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 120

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 121 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 178

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 179 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 238

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 239 RKILISSQGG 248


>gi|332148530|dbj|BAK20114.1| DNA polymerase III PolC [Bacillus subtilis]
          Length = 255

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 63  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 114

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 115 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFY 172

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 173 DYLEVQPPEVYRHLLELELVRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 232

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 233 RKILISSQGG 242


>gi|160689410|gb|ABX45563.1| polymerase C [Bacillus subtilis subsp. inaquosorum]
          Length = 259

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 69  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 120

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 121 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDVASFY 178

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 179 DYLEVQPPEVYRHLLELELVRDEKSLKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 238

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 239 RKILISSQGG 248


>gi|160689338|gb|ABX45527.1| polymerase C [Bacillus subtilis subsp. inaquosorum]
 gi|160689350|gb|ABX45533.1| polymerase C [Bacillus subtilis subsp. spizizenii]
 gi|160689352|gb|ABX45534.1| polymerase C [Bacillus subtilis subsp. spizizenii]
 gi|160689354|gb|ABX45535.1| polymerase C [Bacillus subtilis subsp. inaquosorum]
 gi|160689356|gb|ABX45536.1| polymerase C [Bacillus subtilis subsp. spizizenii]
 gi|160689358|gb|ABX45537.1| polymerase C [Bacillus subtilis subsp. spizizenii]
 gi|160689360|gb|ABX45538.1| polymerase C [Bacillus subtilis subsp. inaquosorum]
 gi|160689362|gb|ABX45539.1| polymerase C [Bacillus subtilis subsp. inaquosorum]
 gi|160689412|gb|ABX45564.1| polymerase C [Bacillus subtilis subsp. inaquosorum]
 gi|160689414|gb|ABX45565.1| polymerase C [Bacillus subtilis subsp. spizizenii]
 gi|293627263|gb|ADE58306.1| DNA polymerase III alpha subunit [Bacillus subtilis subsp.
           inaquosorum]
          Length = 259

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 69  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 120

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 121 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDVASFY 178

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 179 DYLEVQPPEVYRHLLELELVRDEKSLKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 238

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 239 RKILISSQGG 248


>gi|160689394|gb|ABX45555.1| polymerase C [Bacillus tequilensis]
          Length = 259

 Score =  112 bits (281), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ           + N  M               LL   + G + L +
Sbjct: 69  LLKMLKDAAEKGIQ--------YHDELNENMGQSNAYQRSRPYHATLLAVNSTGLKNLFK 120

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 121 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDVASFY 178

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 179 DYLEVQPPEVYRHLLELELVRDEKSLKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIY 238

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 239 RKILVSSQGG 248


>gi|288919035|ref|ZP_06413376.1| PHP domain protein [Frankia sp. EUN1f]
 gi|288349575|gb|EFC83811.1| PHP domain protein [Frankia sp. EUN1f]
          Length = 132

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 37/68 (54%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +  L  HS++S L+GA    +++ +       A+A+TD N ++  + F++ A AAG+  
Sbjct: 19 RYAELHCHSAFSFLDGASQPEDLVAEAVRLGLSALALTDHNGMYGTVRFAEAAAAAGLPT 78

Query: 70 IIGCQLDI 77
          + G ++  
Sbjct: 79 VFGTEVSF 86


>gi|266625917|ref|ZP_06118852.1| DNA polymerase III, alpha subunit [Clostridium hathewayi DSM 13479]
 gi|288862187|gb|EFC94485.1| DNA polymerase III, alpha subunit [Clostridium hathewayi DSM 13479]
          Length = 333

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 88/279 (31%), Gaps = 41/279 (14%)

Query: 56  LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
           ++F Q     G++        +   ++LK              ++++ +   G   L +L
Sbjct: 77  VKFVQMLRERGVE-------TLTELNSLKTMTPEMIKKLPTYHVIIIATNDVGRVNLYKL 129

Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
           +S  ++ D   +  RI  S L +   EGLI+ +   +G + +A     S     RL+ F 
Sbjct: 130 ISWSHI-DYYARRPRIPKSLLNQ-NREGLIVGSACEAGELYQALLRGGSNAEIARLVRFY 187

Query: 176 KLFGDRLYVNLQRHRGY-----DRY-----------RESQVVQLAYTHELPLVATNNSLF 219
                  Y+ +Q          D                ++V+L      P+ AT +  F
Sbjct: 188 D------YLEIQPLGNNSFMLRDEKSTVNSEQDLIDINKKIVELGDQFGKPVCATCDVHF 241

Query: 220 LSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIAR 279
           L  ED     ++MA             + + +           +  +      N  E   
Sbjct: 242 LDPEDEVYRRIIMAGQG---------FKDSDEQAPLYLRTTEEMLKEFEYLGPNKAEEVV 292

Query: 280 RCSFILQVHAPILPRFIEKE-CDDIQKEEENELRNKAVA 317
             +             +  + C  + +  + +LR     
Sbjct: 293 IRNTRKIADMCEKISPVRPDKCPPVIENSDGDLRQICYD 331


>gi|41817835|gb|AAS11675.1| polymerase III subunit alpha [Shigella flexneri]
          Length = 300

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 106/301 (35%), Positives = 165/301 (54%), Gaps = 13/301 (4%)

Query: 410 PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY 469
           P+R+SMPDFD+DFC ++ D+VI +V                                   
Sbjct: 1   PERVSMPDFDVDFCMEKLDQVIEHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
                        P   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA
Sbjct: 61  XXXXXXXXXXXXXPGMTL-AKAFEAELQLPEIYEADEEVKALIDMARKLEGVTRNAGKHA 119

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
            G+VI    ++   P+Y D     PVTQF+   +E AGL+KFDFLGL+TLT++  +L+ +
Sbjct: 120 GGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMI 179

Query: 590 AQRGVKV-----DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII 644
            +R  K      D++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+I
Sbjct: 180 NKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMI 239

Query: 645 ALVSLYRPGPIDNIVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQ 697
           ALV+L+RPGP+ + +V  + +RK+G+E+I        H  +  +L+ T G+I+YQEQVMQ
Sbjct: 240 ALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKSVLEPTYGIILYQEQVMQ 299

Query: 698 I 698
           I
Sbjct: 300 I 300


>gi|257487761|ref|ZP_05641802.1| error-prone DNA polymerase [Pseudomonas syringae pv. tabaci ATCC
            11528]
          Length = 149

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
              +   +     +   LG     HPL + +  L     +  ++ ++      + +A +V+
Sbjct: 7    LPLPTVAEDLMADYATLGTTLGPHPLALLRRQLAAKRFRSSQDLLSLENDRTLSVAGLVI 66

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +Q+  T  G  + +VT  +         +
Sbjct: 67   GRQRPGTASG--VTFVTLEDEFGMVNVVVW 94


>gi|255657859|ref|ZP_05403268.1| DNA polymerase III, alpha subunit [Mitsuokella multacida DSM 20544]
 gi|260850049|gb|EEX70056.1| DNA polymerase III, alpha subunit [Mitsuokella multacida DSM 20544]
          Length = 826

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 95/432 (21%), Positives = 176/432 (40%), Gaps = 35/432 (8%)

Query: 418 FDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQ--AKAALRDVGRALQMPYSQVDRL 475
            D D     R  VI +V+  YG+    Q + +        A    V +A Q  +++    
Sbjct: 2   VDSDLSTLNRGRVIEHVKEMYGNVCKVQTLGYTKDPDKPSAGKEAVLKAWQALFNKYKDN 61

Query: 476 CKLIP-NDPAHPVSLQAIADDSRFREARLAD-----------------PSVDRLLEISQK 517
             +IP  +    +   +   + +F+                            L+++++ 
Sbjct: 62  APMIPCEEQGGLMIDPSWEYNPKFKTEASKYVESSIDDLQDAPISLNEEQKAELIDVAKH 121

Query: 518 LEGLYRHASTHAAGIVIGDRPLSQLVPMY--------RDVRSDLPVTQFNMKWIEKAGLI 569
             G       HA+ +++    L    P+            R  +    ++   +E+ G +
Sbjct: 122 FCGRIDKIGVHASAVLVTPDDLVNYTPVEGCYSNDTSTKKREYIRTACYSFHELEQRGNL 181

Query: 570 KFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMR 629
           K D LGL TL L+ K + ++       +L  IP DD + Y + +     G+FQ+ES GMR
Sbjct: 182 KLDLLGLNTLDLIDKCMKYIGNDM---NLDDIPMDDVKAYEMYSNGNLDGVFQMESPGMR 238

Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNR-KNGKEKIVSIHPLIDPMLKETQGV 688
           +  + +   C +D+ ALV+LYRPGP+D+ ++           +  +      + K T GV
Sbjct: 239 KVAKELHVSCFDDVAALVALYRPGPLDSGMMQQYIDGKNGAAVDYLCDAYKEVTKNTFGV 298

Query: 689 IIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVN 748
           I+YQEQ M++A  ++GYSL EAD+LR+ +G+K   ++D   + FI+   K+G S  +A  
Sbjct: 299 IVYQEQCMKLAMKMAGYSLGEADMLRKVIGRKEMTKIDAAVKEFITRCMKHGYSHEVAEK 358

Query: 749 IFELLAKFADYGFNKSHA---AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
           +   +     Y FNK  +           +T          F          +   +   
Sbjct: 359 VGMQIKAAGRYLFNKCLSGRECVVMHTGARTKRSIRELYRFFHDDKYNKRQLDPWNVNGV 418

Query: 806 CQDARQFNIQIM 817
              +   + +++
Sbjct: 419 KACSMDNDGKMV 430



 Score = 97.2 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/300 (22%), Positives = 114/300 (38%), Gaps = 55/300 (18%)

Query: 750  FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDA 809
            +             SH+ AY  +SY+TA++K HYPV+F+ A +  +    + I  +  + 
Sbjct: 515  YHNFVTSNGIVVCNSHSVAYGRLSYKTAYLKAHYPVQFMCALLNTKDKQED-ILPYVANC 573

Query: 810  RQFNIQIMPPSVNTPCVDFK-VGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDF 868
            +   I+I+PPS+     +++ VG+N I   L  IKGVG               F+  E  
Sbjct: 574  KAMGIRILPPSLFEGNREWEIVGNNAIRVGLTYIKGVGKKLV-----TEKYGAFNDREML 628

Query: 869  CSRVDSKKLNRR-VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVE--KNRTNKHEN 925
             +  D    N   V++SL+ AGALD    SR  ++ +L   Q++ + +   + R N + +
Sbjct: 629  TTWKDIVAYNSSDVVKSLISAGALDFLKKSRGWMMGNLLETQRFTKRMAQCEERFNYYRD 688

Query: 926  IFAHEKGTFSDKITLEKFSVENSS--------------VRFENEQRVLGFYFSGHPLDVY 971
             + +          +   +  N                     E +VLGF FS  P    
Sbjct: 689  QYDNATNDKDKARAIRMANQWNDKINATILHEKPEVSFDNAAGEMKVLGFSFSSLP---- 744

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS----EPAKEY 1027
              IL                        +  S  +  T+ G+++  VTF     +     
Sbjct: 745  -DILT----------------------GIASSVHEITTKNGNKMALVTFKTDYGDFKGSI 781


>gi|228471411|ref|ZP_04056206.1| DNA polymerase III, alpha subunit family [Porphyromonas uenonis
           60-3]
 gi|228306785|gb|EEK15911.1| DNA polymerase III, alpha subunit family [Porphyromonas uenonis
           60-3]
          Length = 429

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 88/277 (31%), Positives = 137/277 (49%), Gaps = 3/277 (1%)

Query: 532 IVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ 591
           I I  + +  +V + +    + P    +M   E AGLI F  L  + L+++   L     
Sbjct: 155 IFICSQNIVDIVSVEKKGVRNRPTIAVSMLDAEDAGLIPFHLLRTEALSVIDLCLTM--- 211

Query: 592 RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYR 651
                DL  +P +D  T +L     T GI+  +SS M+  L    P   E+++AL ++  
Sbjct: 212 SDGNFDLDNLPLNDKTTMNLFRQGDTCGIYDFDSSTMQDLLRQAAPQTFEELVALYTMCH 271

Query: 652 PGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEAD 711
           PGP+D    Y  RKNG + I  + P +  +L  T G+ IYQEQ+M IAQ L+ ++  E+D
Sbjct: 272 PGPLDWTTEYIARKNGDKPIEYVIPELREILGYTYGMTIYQEQIMLIAQRLASFTPGESD 331

Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
            LRR +GKK  +     K++FI+  ++NG        IFE       Y F +SHA  Y  
Sbjct: 332 QLRRDLGKKKYDSFVVLKDKFIAQGTRNGFPTDALRGIFEEWEHTTCYTFIRSHAVCYTF 391

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQD 808
           ++YQ  ++K H+P EF  A  T+E+ +         D
Sbjct: 392 LAYQIGYLKVHFPKEFATAYKTMELASAMSNYSNYSD 428


>gi|121998458|ref|YP_001003245.1| DNA polymerase III subunit alpha-like protein [Halorhodospira
           halophila SL1]
 gi|121589863|gb|ABM62443.1| DNA polymerase III alpha subunit-like protein [Halorhodospira
           halophila SL1]
          Length = 590

 Score =  111 bits (278), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 78/380 (20%), Positives = 147/380 (38%), Gaps = 25/380 (6%)

Query: 578 TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
           T  +++ +      R         P+DD +T  L+    T GI  LE + +++ +    P
Sbjct: 169 TCEMVRLARALNDNRDCDPLRWAYPWDDPDTLRLIARGETAGIPLLEDAQLQERMREAAP 228

Query: 638 DCIEDIIALVSLYRPGPIDNIVV-YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
             +E++  +V   R G    ++  Y   + G  +    HP ++ +L  T  + +Y+EQV+
Sbjct: 229 RSLEEVTQVVVAARDGAPHGLLERYRAARTGASRPPLPHPELEDILAPTGYIWLYREQVV 288

Query: 697 QIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERF--ISGASKNGISKTIAVNIFELLA 754
                L G  L+EA  L + + ++  +  + +  R      A++  +     + +   L 
Sbjct: 289 AALARLLGCELAEAVGLAQRLSEEGGDAHEGELSRQLGERIAARCQLPYARGLYLLRALR 348

Query: 755 KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTL-------------------- 794
           +      +++        +Y+ A+ K  YP  F AA +                      
Sbjct: 349 QGLAQVVDRAATLVEVTEAYRQAYYKARYPAVFQAARLNRALRRVTPRGGVRYGVGGGPD 408

Query: 795 -EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-NRIYYSLAAIKGVGTTTARH 852
               + E + + C++A    + ++PP +N     F+  D N + Y L AI  +   TA  
Sbjct: 409 GVCPHREILIRLCKEALSDGVTVLPPDINRSDWGFRPLDRNTVIYGLGAIAQIDRQTADR 468

Query: 853 IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYA 912
           ++       + SL D   R          +E L+F+GALD FG  R  L + LD  Q   
Sbjct: 469 LVLRRRGGEYRSLMDLIIRGFGGTAPAIQVEPLIFSGALDEFGRDRWHLRRELDEAQAVR 528

Query: 913 QWVEKNRTNKHENIFAHEKG 932
            W          ++      
Sbjct: 529 GWQYAADGRTTHSLAGGLDA 548


>gi|160689434|gb|ABX45575.1| polymerase C [Bacillus amyloliquefaciens]
          Length = 259

 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 9/171 (5%)

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +    Q N  M               LL     G + L +LVS  ++     +  RI  
Sbjct: 80  DIFYHDQLNENMGQSNAYQRSRPYHATLLAVNETGLKNLFKLVSISHIQ-YFYRVPRIPR 138

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY-----VNL 186
           S L +   EGL++ +    G +       S +  E     +   ++    +Y     + L
Sbjct: 139 SQLDKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLEVQPPEVYRHLLQLEL 197

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            R     +   + + +L      P+VAT N  +L++ED     +L++    
Sbjct: 198 VRDEKALKEIITNITKLGEKLNKPVVATGNVHYLNDEDKIYRKILVSSQGG 248


>gi|160689368|gb|ABX45542.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689370|gb|ABX45543.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689396|gb|ABX45556.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689398|gb|ABX45557.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689444|gb|ABX45580.1| polymerase C [Bacillus amyloliquefaciens]
          Length = 259

 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 9/171 (5%)

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +    Q N  M               LL     G + L +LVS  ++     +  RI  
Sbjct: 80  DIFYHDQLNENMGQSNAYQRSRPYHATLLAVNETGLKNLFKLVSISHIQ-YFYRVPRIPR 138

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY-----VNL 186
           S L +   EGL++ +    G +       S +  E     +   ++    +Y     + L
Sbjct: 139 SQLNKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLEVQPPEVYRHLLQLEL 197

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            R     +   + + +L      P+VAT N  +L++ED     +L++    
Sbjct: 198 VRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIYRKILISSQGG 248


>gi|160689390|gb|ABX45553.1| polymerase C [Bacillus mojavensis]
 gi|160689392|gb|ABX45554.1| polymerase C [Bacillus mojavensis]
 gi|160689432|gb|ABX45574.1| polymerase C [Bacillus mojavensis]
          Length = 259

 Score =  111 bits (277), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 17/190 (8%)

Query: 55  ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            L+  + A   GIQ           Q N  M               +L   + G + L +
Sbjct: 69  LLKMLEDAAEKGIQ--------YHDQLNENMGQSNAYQRSRPYHATVLAVNSTGLKNLFK 120

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           LVS  ++     +  RI  S L++   EGL++ +    G +       S +  E     +
Sbjct: 121 LVSLSHIH-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDVASFY 178

Query: 175 K--KLFGDRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
              ++    +Y     + L R     +   + + +L      P+VAT N  +L++ED   
Sbjct: 179 DYLEVQPPEVYRHLLELELVRDEKSLKEIITNITKLGEKLNKPVVATGNVHYLNDEDKIY 238

Query: 228 HDVLMAVAHS 237
             +L++    
Sbjct: 239 RKILVSSQGG 248


>gi|160689336|gb|ABX45526.1| polymerase C [Bacillus amyloliquefaciens]
          Length = 259

 Score =  111 bits (277), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 9/171 (5%)

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +    Q N  M               LL     G + L +LVS  ++     +  RI  
Sbjct: 80  DIFYHDQLNENMGQSNAYQRSRPYHATLLAVNETGLKNLFKLVSISHIQ-YFYRVPRIPR 138

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY-----VNL 186
           S L +   EGL++ +    G +       S +  E     +   ++    +Y     + L
Sbjct: 139 SQLDKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLEVQPPEVYRHLLQLEL 197

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            R     +   + + +L      P+VAT N  +L++ED     +L++    
Sbjct: 198 VRDEKALKEIITNITKLGEKLNKPVVATGNVHYLNDEDKIYRKILVSSQGG 248


>gi|289673971|ref|ZP_06494861.1| error-prone DNA polymerase [Pseudomonas syringae pv. syringae FF5]
          Length = 150

 Score =  111 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 2/90 (2%)

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
              +   +     +   LG     HPL + +  L     +  ++ +       + +A +V+
Sbjct: 8    LPLPTVAEDLVADYTTLGTTLGPHPLALLRRQLAAKRFRSSQDLLHLENDRTLSVAGLVI 67

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +Q+  T  G  + +VT  +         +
Sbjct: 68   GRQRPGTASG--VTFVTLEDEFGMVNVVVW 95


>gi|160689340|gb|ABX45528.1| polymerase C [Bacillus mojavensis]
          Length = 259

 Score =  111 bits (276), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 66/183 (36%), Gaps = 17/183 (9%)

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
           A   GIQ           Q N  M               +L   + G + L +LVS  ++
Sbjct: 76  AAEKGIQ--------YHDQLNENMGQSNAYQRSRPYHATVLAVNSTGLKNLFKLVSLSHI 127

Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFG 179
                +  RI  S L++   EGL++ +    G +       S +  E     +   ++  
Sbjct: 128 H-YFYRVPRIPRSQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDVASFYDYLEVQP 185

Query: 180 DRLY-----VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAV 234
             +Y     + L R     +   + + +L      P+VAT N  +L++ED     +L++ 
Sbjct: 186 PEVYRHLLELELVRDEKSLKEIITNITKLGEKLNKPVVATGNVHYLNDEDKIYRKILVSS 245

Query: 235 AHS 237
              
Sbjct: 246 QGG 248


>gi|160689332|gb|ABX45524.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689388|gb|ABX45552.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689406|gb|ABX45561.1| polymerase C [Bacillus amyloliquefaciens]
 gi|160689408|gb|ABX45562.1| polymerase C [Bacillus amyloliquefaciens]
          Length = 259

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 9/171 (5%)

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +    Q N  M               LL     G + L +LVS  ++     +  RI  
Sbjct: 80  DIFYHDQLNENMGQSNAYQRSRPYHATLLAVNETGLKNLFKLVSISHIQ-YFYRVPRIPR 138

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY-----VNL 186
           S L +   EGL++ +    G +       S +  E     +   ++    +Y     + L
Sbjct: 139 SQLNKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLEVQPPEVYRHLLQLEL 197

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            R     +   + + +L      P+VAT N  +L++ED     +L++    
Sbjct: 198 VRDEKALKEIITNITKLGEKLNKPVVATGNVHYLNDEDKIYRKILISSQGG 248


>gi|330950664|gb|EGH50924.1| DNA polymerase III subunit alpha [Pseudomonas syringae Cit 7]
          Length = 230

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
              +   R   E+  LG Y +GHP+D Y+  +R+   +   +           +A ++++ 
Sbjct: 17   ELSLKDRLRGEKETLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQ--TVAGLIIAL 74

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  K +KG ++G++T  + +   EA+ F
Sbjct: 75   RVMKNKKGDKMGFITLDDRSARIEASLF 102


>gi|332148536|dbj|BAK20117.1| DNA polymerase III PolC [Bacillus amyloliquefaciens]
 gi|332148540|dbj|BAK20119.1| DNA polymerase III PolC [Bacillus amyloliquefaciens]
 gi|332148542|dbj|BAK20120.1| DNA polymerase III PolC [Bacillus amyloliquefaciens]
 gi|332148544|dbj|BAK20121.1| DNA polymerase III PolC [Bacillus amyloliquefaciens]
 gi|332148550|dbj|BAK20124.1| DNA polymerase III PolC [Bacillus amyloliquefaciens]
          Length = 238

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 62/172 (36%), Gaps = 9/172 (5%)

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +    Q N  M               LL     G + L +LVS  ++     +  RI  
Sbjct: 67  DIFYHDQLNENMGQSNAYQRSRPYHATLLAVNETGLKNLFKLVSISHIQ-YFYRVPRIPR 125

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY-----VNL 186
           S L +   EGL++ +    G +       S +  E     +   ++    +Y     + L
Sbjct: 126 SQLNKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLEVQPPEVYRHLLQLEL 184

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHST 238
            R     +   + + +L      P+VAT N  +L++ED     +L++ A   
Sbjct: 185 VRDEKALKEIIANITKLGEKLNKPVVATGNVHYLNDEDKIYRKILISSARRR 236


>gi|160689446|gb|ABX45581.1| polymerase C [Bacillus atrophaeus]
          Length = 259

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 63/171 (36%), Gaps = 9/171 (5%)

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +    Q N  M               LL     G + L +LVS  ++     +  RI  
Sbjct: 80  DIQYHDQLNENMGQSNAYQRSRPYHATLLAVNDTGLKNLFKLVSMSHIH-YFYRVPRIPR 138

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY-----VNL 186
           S L++   EGL++ +    G +       S +  E     +   ++    +Y     + L
Sbjct: 139 SQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLEVQPPEVYRHLLQLEL 197

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            R     +   + + +L    + P+VAT N  +L++ED     +L++    
Sbjct: 198 VRDEKALKEIITNITKLGEKLDKPVVATGNVHYLNDEDKIYRKILISSQGG 248


>gi|291536049|emb|CBL09161.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis M50/1]
          Length = 911

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 81/271 (29%), Gaps = 35/271 (12%)

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +  +D  + +   +            ++L +   G   L  L+S  +L     +  RI
Sbjct: 647 GME-TLDQVNQMGQASPETIMKMNTYHAIILATNDIGRINLYRLISLSHLT-YYNKRPRI 704

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             S   +   EGL++ +   +G + RA      +    RL+ F        Y+ +Q    
Sbjct: 705 PKSEFVKY-REGLLLGSACEAGELYRAIVGGRPEEEIIRLVKFYD------YLEIQPLGN 757

Query: 192 YD----------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            +                +    ++V+L  T    +VAT +  FL  ED     ++MA  
Sbjct: 758 NEFMLKSDKESVSTIEELQDINRRIVKLGETFGKLVVATCDVHFLDPEDEIYRRIIMA-- 815

Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                      +   D           +  +         E     +             
Sbjct: 816 -------GKGFKDADDQAPLYLRTTEEMLKEFEYLGSAKAEEVVITNPNKIADMCEKIAP 868

Query: 296 IEKE-CDDIQKEEENELRNKAVAGLEVRLAQ 325
           +  + C  + +  +  LR+         + +
Sbjct: 869 VRPDKCPPVIENSDQMLRDICYTKAHRYVWR 899



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 2/95 (2%)

Query: 5   LEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
           ++ SP   V L  H+  S ++G   + +I+ +       AIAITD  ++ +  + +    
Sbjct: 387 MDTSPEKRVELHCHTKMSDMDGVSEVKDIVKRAMKWGHKAIAITDHGDVQAFPDANHAIS 446

Query: 64  -AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
                + I G +  +       +TN          
Sbjct: 447 PDDDFKVIYGVEAYLVDDLKDIITNSKNQNLDDTY 481


>gi|160689452|gb|ABX45584.1| polymerase C [Bacillus atrophaeus]
          Length = 259

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 63/171 (36%), Gaps = 9/171 (5%)

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +    Q N  M               LL     G + L +LVS  ++     +  RI  
Sbjct: 80  DIQYHDQLNENMGQSNAYQRSRPYHATLLAVNDTGLKNLFKLVSMSHIH-YFYRVPRIPR 138

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK--KLFGDRLY-----VNL 186
           S L++   EGL++ +    G +       S +  E     +   ++    +Y     + L
Sbjct: 139 SQLEKY-REGLLIGSACDRGEVFEGMMQKSPEEVEDIASFYDYLEVQPPEVYRHLLQLEL 197

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
            R     +   + + +L    + P+VAT N  +L++ED     +L++    
Sbjct: 198 VRDEKALKEIITNITKLGEKLDKPVVATGNVHYLNDEDKIYRKILISSQGG 248


>gi|266625640|ref|ZP_06118575.1| DNA polymerase III, alpha chain [Clostridium hathewayi DSM 13479]
 gi|288862456|gb|EFC94754.1| DNA polymerase III, alpha chain [Clostridium hathewayi DSM 13479]
          Length = 567

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 92/582 (15%), Positives = 178/582 (30%), Gaps = 94/582 (16%)

Query: 353 FSGYFLIVADFIQW-AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
              Y+     +  + +++     G              +    +    F + FE FL   
Sbjct: 29  SPHYYCASCHYYDFDSEEVKKYTGMAGCDMPDKTCP--VCGHPLTKDGFDIPFETFLGFK 86

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQ 471
               PD D++F  + + +   Y +  +G  +  +  T G+L  K A   V    +     
Sbjct: 87  GDKEPDIDLNFSGEYQSKAHDYTEVIFGKGQTFRAGTIGTLADKTAYGYVKNYYE----- 141

Query: 472 VDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAG 531
                                                  +  I Q   G+ R    H  G
Sbjct: 142 -----------------------------EHGVHKRNCEINRIVQGCVGVRRTTGQHPGG 172

Query: 532 IV--IGDRPLSQLVPMYRDVRSD--LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           I+       +    P+ R       + VT           L+K D LG    T+++   D
Sbjct: 173 IIVLPHGEEIYSFTPVQRPANDMTTMTVTTHFDYHSIDHNLLKLDILGHDDPTMIRMLQD 232

Query: 588 FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALV 647
            +        +  IP D  E   L      LGI   E  G  +      P+   D    +
Sbjct: 233 LI----GFDPVKDIPLDSREVMSLFQDTSALGITP-EDIGGCKLGALGVPEFGTDFAMQM 287

Query: 648 SLYRPGPIDNIVVYNNRKNGKEKIVSIH-PLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
            +       + +V          +   +   +    K T    I     + I  +  G  
Sbjct: 288 LIDTQPKYFSDLVRIAGLAHGTDVWLGNAQTLIQEGKATIQTAICTRDDIMIYLISMGLE 347

Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
              +  +  ++ K    + +     +      +G+      +  ++      Y F K+HA
Sbjct: 348 EGLSFTIMESVRKGKGLKPE-----WEEEMISHGVPDWYIWSCKKI-----KYMFPKAHA 397

Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK------------------------- 801
           AAY +++++ A+ K  YP+ + AA  ++  +                             
Sbjct: 398 AAYVMMAWRIAYCKVFYPLAYYAAFFSIRANGFSYELMCQGRDKLEYYLADYKKRMDTLS 457

Query: 802 --------IKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTARH 852
                     +  Q+         P  +       F++   ++  SL++I G+G   A  
Sbjct: 458 KKEQDTLRDMRIVQEMYARGYDFTPIDIYQAKARHFQIIGGKLMPSLSSIDGLGEKAADA 517

Query: 853 IMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
           +++A  D  F S EDF +R    K+++ V + +   G L   
Sbjct: 518 VVDAVKDGKFLSKEDFRNRT---KVSKTVCDLMADLGLLGEL 556


>gi|291538542|emb|CBL11653.1| exonuclease, DNA polymerase III, epsilon subunit family [Roseburia
           intestinalis XB6B4]
          Length = 905

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 81/271 (29%), Gaps = 35/271 (12%)

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +  +D  + +   +            ++L +   G   L  L+S  +L     +  RI
Sbjct: 641 GME-TLDQVNQMGQASPETIMKMNTYHAIILATNDIGRINLYRLISLSHLT-YYNKRPRI 698

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
             S   +   EGL++ +   +G + RA      +    RL+ F        Y+ +Q    
Sbjct: 699 PKSEFVKY-REGLLLGSACEAGELYRAIVGGRPEEEIIRLVKFYD------YLEIQPLGN 751

Query: 192 YD----------------RYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
            +                +    ++V+L  T    +VAT +  FL  ED     ++MA  
Sbjct: 752 NEFMLKSDKESVSTIEELQDINRRIVKLGETFGKLVVATCDVHFLDPEDEIYRRIIMA-- 809

Query: 236 HSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
                      +   D           +  +         E     +             
Sbjct: 810 -------GKGFKDADDQAPLYLRTTEEMLKEFEYLGSAKAEEVVITNPNKIADMCEKIAP 862

Query: 296 IEKE-CDDIQKEEENELRNKAVAGLEVRLAQ 325
           +  + C  + +  +  LR+         + +
Sbjct: 863 VRPDKCPPVIENSDQMLRDICYTKAHRYVWR 893



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 2/95 (2%)

Query: 5   LEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
           ++ SP   V L  H+  S ++G   + +I+ +       AIAITD  ++ +  + +    
Sbjct: 381 MDTSPEKRVELHCHTKMSDMDGVSEVKDIVKRAMKWGHKAIAITDHGDVQAFPDANHAIS 440

Query: 64  -AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
                + I G +  +       +TN          
Sbjct: 441 PDDDFKVIYGVEAYLVDDLKDIITNSKNQNLDDTY 475


>gi|255019086|ref|ZP_05291212.1| hypothetical protein LmonF_17486 [Listeria monocytogenes FSL
           F2-515]
          Length = 188

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 83/180 (46%), Positives = 122/180 (67%), Gaps = 1/180 (0%)

Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
           +Y++RL++EL VI  M F+ YFLIV D I+++++  +  GPGRGS AGS+ +YAL ITD+
Sbjct: 10  EYQERLEYELKVITEMGFADYFLIVWDVIRYSREAGVLTGPGRGSAAGSLVSYALRITDV 69

Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
           DP+R++LLFERFLNP+R++MPD D+DF  +RRDEVI YV +KYG   VAQI TFG+L AK
Sbjct: 70  DPIRYNLLFERFLNPERITMPDIDLDFPDNRRDEVISYVVSKYGEAHVAQIGTFGTLAAK 129

Query: 456 AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
           AA+RD  R+  +    +    KLIP+     +  +A+ +  R      +    + + E++
Sbjct: 130 AAIRDTARSFGLNSVLLSEWSKLIPSQLGITL-QEALQESPRLENHIKSSKENEMIWEVA 188


>gi|330974636|gb|EGH74702.1| error-prone DNA polymerase [Pseudomonas syringae pv. aceris str.
          M302273PT]
          Length = 74

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          + +   +  L   S++S   GA S   + ++       A+AITD   L   +   Q + +
Sbjct: 1  MTRE--YAELHCLSNFSFQRGASSARELFERALRHGYKALAITDECTLAGIVRAWQASKS 58

Query: 65 AGIQPIIGCQLDIDMQ 80
           G+  I+G ++ I+  
Sbjct: 59 TGLPLIVGSEMHIENG 74


>gi|227495220|ref|ZP_03925536.1| possible DNA-directed DNA polymerase [Actinomyces coleocanis DSM
           15436]
 gi|226831672|gb|EEH64055.1| possible DNA-directed DNA polymerase [Actinomyces coleocanis DSM
           15436]
          Length = 583

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 98/329 (29%), Positives = 150/329 (45%), Gaps = 11/329 (3%)

Query: 157 RAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE-SQVVQLAYTHELPLVATN 215
           +A      +  +++L    ++F  +L V        DR     Q+  LA   +LPLVAT 
Sbjct: 3   QALEAGGLEAGKRQLDFLSEVFSRKLAVESTLVTERDREYVSQQLGLLAKQADLPLVATT 62

Query: 216 NSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTV 275
            +            VL A+     +SQ +         L++ ++MV I    PEA+ N  
Sbjct: 63  AARAADLRSLRKSHVLRAIQMQGSLSQVEPFLEAFLPILRSAADMVQIHKYHPEAVTNAA 122

Query: 276 EIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQ 335
           ++A   +F  ++ AP LP           + E   LR  A  G ++R            +
Sbjct: 123 QLAGEIAFDFRLLAPQLPVGQV----SAGETETAWLRKCAYEGAKLRY-----DSRAENR 173

Query: 336 DYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDI 395
              + +D EL +IA + F GYFLIV + + + K N+I    GRGS A S   YAL IT +
Sbjct: 174 KAWETIDHELKIIANLGFCGYFLIVKEIVDFCKANDIL-CQGRGSAANSAVCYALGITAV 232

Query: 396 DPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
           D +   L+FERFL+PDR   PD DID    RR+EVI++V  KYG    AQ+    + + +
Sbjct: 233 DAVYHRLMFERFLSPDRSGPPDIDIDIEAKRREEVIQHVFEKYGRHNAAQVANVITYRHR 292

Query: 456 AALRDVGRALQMPYSQVDRLCKLIPNDPA 484
           +A+RD  +A         +  K    +  
Sbjct: 293 SAIRDAAKAFGFSEEIALQWDKEYCAEAG 321



 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 105/347 (30%), Positives = 171/347 (49%), Gaps = 17/347 (4%)

Query: 490 QAIADDSRFREARLADPSVDRLLEISQK----LEGLYRHASTHAAGIVIGDRPLSQLVPM 545
                  RF     + P    +   +++    ++ ++     H A  V           +
Sbjct: 236 YHRLMFERFLSPDRSGPPDIDIDIEAKRREEVIQHVFEKYGRHNAAQVANVITYRHRSAI 295

Query: 546 YRDVR----SDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV----- 596
               +    S+    Q++ ++  +AGL+KF  LGL  LT L++    L ++G        
Sbjct: 296 RDAAKAFGFSEEIALQWDKEYCAEAGLVKFVLLGLGMLTALRRMFSALEKQGYVQADGRK 355

Query: 597 -DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPI 655
            DL  +P +D +   LL    T+G+FQ+ES      L  ++P C  D++  V L RPGPI
Sbjct: 356 LDLYSLPAEDPQVCDLLCADDTVGVFQVESRAQMNTLPRLRPRCFYDLVVEVVLIRPGPI 415

Query: 656 DNI--VVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVL 713
                  Y  R  GKE +  +  L+ P+L+ T GV  +QEQ+MQIA   +G+S +EAD L
Sbjct: 416 QGNAVNPYLRRCLGKEPVRYVDELLKPILERTLGVPFFQEQLMQIAVEAAGFSAAEADQL 475

Query: 714 RRAM-GKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVI 772
           R+AM  K+ +E M K K +  +G ++NGI    A  IFE  + FA++ F +SHA ++A I
Sbjct: 476 RKAMGSKRSEERMRKLKPQLYAGLAQNGIVGERAEEIFEYFSGFAEFSFPESHAFSFAYI 535

Query: 773 SYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPP 819
            Y +AWMK H+P EF A+ +  +      +     DA +  ++++P 
Sbjct: 536 VYASAWMKVHFPHEFYASIIASQPMGFYSVYSLVADAHRRGVRVLPR 582


>gi|218507046|ref|ZP_03504924.1| DNA polymerase III protein, alpha subunit [Rhizobium etli Brasil 5]
          Length = 160

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 58/161 (36%), Gaps = 17/161 (10%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           ++   +F  +   +++S LEGA S   ++ + A  +   + I D N++   +     A A
Sbjct: 1   MKGERAFFEIGARTNFSFLEGASSPEEMVLQAAHLRLGGLGIADRNSVAGVVRAH--AQA 58

Query: 65  AGI-------QPIIGCQLDIDMQDNLKMTNQGKTPF------PTVPSIVLLVSTAEGYQR 111
             I         I+  + +   +           P          P I+       G+  
Sbjct: 59  EQIEERYKNRDAIL-AEAEKTGKKERIFHPIRIQPGARLVFSDDTPDILAYPCNRRGWAN 117

Query: 112 LIELVSRMYLLDQG-KQSVRICLSWLQEIGTEGLIMLTGGS 151
           L  L+S   L ++  K S  +  + L E G E ++ L    
Sbjct: 118 LCRLLSAGNLKEEAVKGSCILTEAELMEWGDEMMLALVADR 158


>gi|194246482|ref|YP_002004121.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
 gi|193806839|emb|CAP18268.1| DNA polymerase III alpha subunit [Candidatus Phytoplasma mali]
          Length = 1522

 Score =  108 bits (269), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 119/349 (34%), Gaps = 37/349 (10%)

Query: 91  TPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGG 150
           + +     I +LVS   GY+ L +++S   L +   +  R+  S L +   EGL++ +G 
Sbjct: 598 SKYERTYDINVLVSNQIGYRNLFKVLSDA-LTNNFYKKPRVLKSVLHQY-REGLLIGSGC 655

Query: 151 SSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ-----RHRGYD---------RYR 196
            +G +      +  +  +K +  +        Y+ +Q      H  Y+            
Sbjct: 656 YNGNVFEIALNDDLESLKKAISFYD-------YIEVQPPQSYNHLIYELGIEGKKIIEQT 708

Query: 197 ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA-----HSTVVSQKDRPRVTPD 251
             +++Q +   +  ++A+ +  +L   +    ++ +           +   +        
Sbjct: 709 ILKIIQESKKQKKIIIASGDVHYLHPYEKIYREIYINAKLIGGGLHKLSKYEIAQLPDNA 768

Query: 252 HYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE---EE 308
                       F D   A E  +      +  ++       +      D  ++    + 
Sbjct: 769 FLTTQEMLDSFNFLDSEIAKEIVITNTNILNQKIEKIKIFPNKLFSLSDDAFKENLNIDS 828

Query: 309 NELRNKAVAGLEVRLAQGAIAKGYHAQDYR---QRLDFELNVIARMKFSGYFLIVADFIQ 365
            +L  K++   ++    G               + ++ +      + FS  + +    ++
Sbjct: 829 IKLEIKSIVNSKLTELYGKKPHDLIKDRINKEFEIINGDEKDPNSLNFSPIYYLSHLLVK 888

Query: 366 WAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--FSLLFERFLNPDR 412
            +  +   VG  RGS   S+ A  L IT+++PL+  +      F    +
Sbjct: 889 KSLSDGYLVG-SRGSIGSSLVAKLLEITEVNPLKPHYICPKCFFYTDIK 936



 Score = 94.5 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 87/547 (15%), Positives = 177/547 (32%), Gaps = 102/547 (18%)

Query: 400  FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALR 459
              + FE FL  +   +PD D++F  D + +   Y++   G   V +  T  ++  + A  
Sbjct: 1023 NDIPFETFLGIEGNKIPDIDLNFAGDYQLKAHNYIKELLGKYNVFRAGTIQTVAERNAYG 1082

Query: 460  DVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLE 519
             +   L+     ++                                     +   ++ ++
Sbjct: 1083 YIKGFLKDKQQFLNES----------------------------------EISRRTKVIQ 1108

Query: 520  GLYRHASTHAAGIVIGD--RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFL 574
            G+ R    H  GIVI      +  + P+         +   T F+    E   L+K D L
Sbjct: 1109 GVKRSTGQHPGGIVIVPKECSIYDITPIQYPANDKDSEWKTTHFDYHSFEN-NLLKLDIL 1167

Query: 575  GLK---TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQA 631
            G      +  L   ++   Q         IP DD   Y +        I      G+ + 
Sbjct: 1168 GHDDPIMIKFLMDYVEKNPQEFDFNKAQDIPLDDELVYKIF--SEDNEIKGYTVLGIPEF 1225

Query: 632  LEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQ----G 687
                    ++DI+   S        ++V  +   +G     +    +    ++       
Sbjct: 1226 GTVFVRRMLKDIVNKDSQKTILKFSDLVKISGLSHGTGVWTNNAEKLIDHNEKNHREFNE 1285

Query: 688  VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
            +I  ++ +  I  +       +A  +   + K +  +  +Q   +          +    
Sbjct: 1286 IIACRDDI-MIQLIEKKIEPLKAFEIMEFIRKGLPSQNKEQWSEYKKIMK-----ENQIE 1339

Query: 748  NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK------ 801
            + +   AK  +Y F K+HA AY +++ + AW K H P+ F +   +   D+ +       
Sbjct: 1340 DWYIDSAKKIEYLFPKAHAVAYVIMAMRIAWFKFHKPLLFYSGYFSKRADHFDYDTMTSD 1399

Query: 802  --------IKKFCQDARQFNIQIMPPSVNTPCVDFK-----------------------V 830
                    I     + +    +    S+     +F+                       V
Sbjct: 1400 KYNAIENKINFLNNNIKNSAKEANLLSILKVAKEFRNRKEKFQFFPIDLNKSEKNNFILV 1459

Query: 831  GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV---LESLVF 887
             +  +      + G+G   A  I+E    KPF   +DF  R    K+N+ +   +ES+  
Sbjct: 1460 KNQGLLMPFITLDGLGPVAASRIIEERKIKPFT-KKDFLKR---SKVNKTIFSKIESM-- 1513

Query: 888  AGALDCF 894
             G L+  
Sbjct: 1514 -GLLNSL 1519



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           +   +H+  S L+   S  + L+K       AIA TD N +++  E  + +    I+PI 
Sbjct: 324 IEFHLHTKMSNLDAITSAKDYLEKAEEWGHKAIAFTDHNGIYAYPEIFKYSKDKKIKPIY 383

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
           G +L+   +  + +TN  K        +       E
Sbjct: 384 GAELEFIEEKPIFITNHNKHSEFKDFIL----KNME 415


>gi|330993051|ref|ZP_08316989.1| Error-prone DNA polymerase 1 [Gluconacetobacter sp. SXCC-1]
 gi|329759821|gb|EGG76327.1| Error-prone DNA polymerase 1 [Gluconacetobacter sp. SXCC-1]
          Length = 167

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 2/91 (2%)

Query: 943  FSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVV 1002
                        +   LG     HPL   +  L+  GI   + ++A   G  + +A +V+
Sbjct: 6    LQPMRDGAEVVRDYNRLGLTLRNHPLTFLRGDLQTRGIISCQHALAAKDGKRLTVAGLVL 65

Query: 1003 SKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +Q+  + +G  + ++T  +         +P
Sbjct: 66   VRQRPGSAEG--VVFMTLEDETANMNVIIWP 94


>gi|77414679|ref|ZP_00790814.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 515]
 gi|77159276|gb|EAO70452.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae 515]
          Length = 579

 Score =  106 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 90/619 (14%), Positives = 185/619 (29%), Gaps = 122/619 (19%)

Query: 354 SGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRM 413
             Y        ++    +   G    +               D     + FE FL  D  
Sbjct: 38  PHYVCPNCQHSEFITDGSCGSGYDLPNKNCPKCGTLYKKDGQD-----IPFETFLGFDGD 92

Query: 414 SMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVD 473
            +PD D++F  D +      V++ +G E   +  T G++  K A   V            
Sbjct: 93  KVPDIDLNFSGDDQPSAHLDVRDIFGEEYAFRAGTVGTVAEKTAFGFVK----------- 141

Query: 474 RLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV 533
                      +        +D+                  +    G+ R    H  GIV
Sbjct: 142 ----------GYERDYNKFYNDAEVERL-------------ATGAAGVKRSTGQHPGGIV 178

Query: 534 --IGDRPLSQLVPMYRDVRSD---LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
                  +    P+             T FN   I++  ++K D LG    T+++K    
Sbjct: 179 VIPNYMDVYDFTPVQYPADDMTAAWQTTHFNFHDIDE-NVLKLDILGHDDPTMIRK---- 233

Query: 589 LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIAL 646
             Q    +D S I  DD +   L +    LG+   Q+ +      +     + +  ++  
Sbjct: 234 -LQDLSGIDPSNILPDDPDVMKLFSGTEVLGVTEEQIGTPTGMLGIPEFGTNFVRGMVNE 292

Query: 647 VSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYS 706
                P     ++  +   +G +  +     +      T   +I     + +  + +G  
Sbjct: 293 T---HPTTFAELLQLSGLSHGTDVWLGNAQDLIKEGIATLSTVIGCRDDIMVYLMHAGLQ 349

Query: 707 LSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHA 766
              A  +   + K +  ++ + +      A ++       +     +     Y F K+HA
Sbjct: 350 PKMAFTIMERVRKGLWLKISEDERNGYIQAMRDNNVPDWYIESCGKI----KYMFPKAHA 405

Query: 767 AAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---------------------- 804
           AAY +++ + A+ K HYP+ +  A  ++     E                          
Sbjct: 406 AAYVLMALRVAYFKVHYPIFYYCAYFSIRAKAFELRTMSAGLDAVKARMKDITEKRQRNE 465

Query: 805 -------------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTA 850
                           +  +   +     +      DF + ++ +     A++G+G   A
Sbjct: 466 ATNVENDLFTTLELVNEMLERGFKFGKLDLYRSHATDFIIEEDTLIPPFVAMEGLGENVA 525

Query: 851 RHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQK 910
           + I+ A  D  F S  +   R     ++  ++E        D  G      L +L     
Sbjct: 526 KQIVRAREDGEFLSKTELRKR---GGVSSTLVEK------FDEMGI-----LGNLPE--- 568

Query: 911 YAQWVEKNRTNKHENIFAH 929
                     +   ++F  
Sbjct: 569 ----------DNQLSLFDD 577


>gi|258614815|ref|ZP_05712585.1| DNA polymerase III PolC [Enterococcus faecium DO]
          Length = 446

 Score =  106 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 81/493 (16%), Positives = 152/493 (30%), Gaps = 100/493 (20%)

Query: 144 LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYV-----NLQRHRGYDRYR 196
           L++ +    G I  A      + A  R   +   ++    +Y       L ++       
Sbjct: 1   LLIGSACDKGEIFEAMMQKGVEEARNRAKFYDYIEVMPKAVYAPLIEQELVKNEHDLEEI 60

Query: 197 ESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKN 256
              +V++  + +  +VAT N  +L+EED     +L+                       +
Sbjct: 61  IQNLVEIGKSLDKIVVATGNVHYLNEEDAIYRKILINSMGGA-NPLNRHSLPDVHFRTTD 119

Query: 257 RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
                  F     A E  VE   + + I +   P+       +        E+E+   + 
Sbjct: 120 EMLTAFHFLGEETAKEIVVENTNKIADICEEVIPVKDELYTPKIPG----SEDEISELSY 175

Query: 317 AGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGP 376
              +              +  ++RL  ELN I    FS  +LI    +  + ++   VG 
Sbjct: 176 TKAKQMYGDPL------PEIIQKRLKKELNSINGNGFSVIYLIAQKLVHKSNEDGYLVG- 228

Query: 377 GRGSGAGSVTAYALTITDIDPLR------------------------------------- 399
            RGS   S  A    IT+++PL                                      
Sbjct: 229 SRGSVGSSFVATMTGITEVNPLAPHYYCPECQYSEFFEDGTYGSGFDMPEKQCPKCGARL 288

Query: 400 ----FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                 + FE FL      +PD D++F  D + E   Y +  +G + V +  T G++  K
Sbjct: 289 NKDGHDIPFETFLGFHGDKVPDIDLNFSGDYQAEAHNYTKVLFGEDYVYRAGTIGTVADK 348

Query: 456 AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
            A   V +  +   +   R  +                                 +  ++
Sbjct: 349 TAYGYV-KGYERDNNLQFRSAE---------------------------------VDRLA 374

Query: 516 QKLEGLYRHASTHAAGI--VIGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIK 570
           +   G+ R    H  GI  +     +    P+         +   T F+   I    ++K
Sbjct: 375 KGATGVKRTTGQHPGGIIVIPDYMDVYDFTPIQYPADDQNSEWKTTHFDFHSIHD-NVLK 433

Query: 571 FDFLGLKTLTLLQ 583
            D LG    T+++
Sbjct: 434 LDILGHDDPTVIR 446


>gi|298230238|ref|ZP_06963919.1| DNA polymerase III DnaE [Streptococcus pneumoniae str. Canada
           MDR_19F]
          Length = 172

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 55/138 (39%), Gaps = 21/138 (15%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3   AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G ++ + + D                 +  L  ++ GYQ+L++L +     ++       
Sbjct: 63  GLEMTVFVDDQEVN-------------LRFLALSSVGYQQLMKLSTAKMQGEK------- 102

Query: 132 CLSWLQEIGTEGLIMLTG 149
             S L +   E + ++  
Sbjct: 103 TWSVLSQYL-EDIAVIVP 119


>gi|238060268|ref|ZP_04604977.1| error-prone DNA polymerase [Micromonospora sp. ATCC 39149]
 gi|237882079|gb|EEP70907.1| error-prone DNA polymerase [Micromonospora sp. ATCC 39149]
          Length = 148

 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 2/95 (2%)

Query: 939  TLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLA 998
            T        +  R   +    G     HP    +  L  +G            G  IR+ 
Sbjct: 5    TAPTLPGMEAVDRLVADVWATGLSPESHPARFLRERLDALGAVPIARLGRVDPGRRIRVG 64

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             +V  +Q+  T  G  + ++   +          P
Sbjct: 65   GIVTHRQRPATAGG--VTFLNLEDETGMLNVTCSP 97


>gi|222083078|ref|YP_002542443.1| DNA polymerase-related protein [Agrobacterium radiobacter K84]
 gi|221727757|gb|ACM30846.1| DNA polymerase-related protein [Agrobacterium radiobacter K84]
          Length = 210

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 2/82 (2%)

Query: 951  RFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTR 1010
                +   +G     HPL   +  L K  I    E++    G  +  A +V+ +Q+  + 
Sbjct: 28   EVVEDYGHVGLTLRSHPLSFLRADLEKRRIVTCREAMQARDGTWLEAAGLVLVRQRPGSA 87

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            KG  + ++T  +         +
Sbjct: 88   KG--VMFITIEDETGIANLVVW 107


>gi|148996699|ref|ZP_01824417.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP11-BS70]
 gi|147757274|gb|EDK64313.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus pneumoniae SP11-BS70]
          Length = 553

 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 88/620 (14%), Positives = 193/620 (31%), Gaps = 122/620 (19%)

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
              Y      + ++    +   G            + L+    D     + FE FL  D 
Sbjct: 11  SPHYVCGQCQYSEFITDGSYGSGFDMPHKDCPNCGHKLSKNGQD-----IPFETFLGFDG 65

Query: 413 MSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQV 472
             +PD D++F  + +      V++ +G E   +  T G++ AK A   V +  +  Y + 
Sbjct: 66  DKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAKTAYGFV-KGYERDYGKF 124

Query: 473 DRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGI 532
            R  +                                 +  ++Q   G+ R    H  GI
Sbjct: 125 YRDAE---------------------------------VERLAQGAAGVKRTTGQHPGGI 151

Query: 533 V--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD 587
           V       +    P+         +   T FN   I++  ++K D LG    T+++K   
Sbjct: 152 VVIPNYMDVYDFTPVQYPADDVTAEWQTTHFNFHDIDE-NVLKLDVLGHDDPTMIRK--- 207

Query: 588 FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIF--QLESSGMRQALEGMQPDCIEDIIA 645
              Q    +D + IP DD     L +    LG+   Q+ +      +     + +  ++ 
Sbjct: 208 --LQDLSGIDPNKIPMDDEGVMALFSGTDVLGVTPEQIGTPTGMLGIPEFGTNFVRGMVD 265

Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
                 P     ++  +   +G +  +     +          +I     + +  + +G 
Sbjct: 266 ET---HPTTFAELLQLSGLSHGTDVWLGNAQDLIKQGIADLSTVIGCRDDIMVYLMHAGL 322

Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
               A  +   + K +  ++ +++      A K        +     +     Y F K+H
Sbjct: 323 EPKMAFTIMERVRKGLWLKISEEERNGYIEAMKANKVPEWYIESCGKI----KYMFPKAH 378

Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------------- 804
           AAAY +++ + A+ K H+P+ +  A  ++     +                         
Sbjct: 379 AAAYVMMALRVAYFKVHHPIYYYCAYFSIRAKAFDIKTMGAGLEVIKRRMEEISEKRKNN 438

Query: 805 --------------FCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTT 849
                            +  +   +     +      +F +  + +     A+ G+G   
Sbjct: 439 EASNVEIDLYTTLEIVNEMWERGFKFGKLDLYRSQATEFLIDGDTLIPPFVAMDGLGENV 498

Query: 850 ARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQ 909
           A+ ++ A  +  F S  +   R     L+  ++E       +D  G      L ++    
Sbjct: 499 AKQLVRAREEGEFLSKTELRKR---GGLSSTLVEK------MDEMGI-----LGNMPE-- 542

Query: 910 KYAQWVEKNRTNKHENIFAH 929
                      +   ++F  
Sbjct: 543 -----------DNQLSLFDE 551


>gi|324017839|gb|EGB87058.1| DNA polymerase III, alpha subunit [Escherichia coli MS 117-3]
          Length = 209

 Score =  104 bits (259), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 110/203 (54%), Positives = 151/203 (74%), Gaps = 7/203 (3%)

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           ++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ +
Sbjct: 7   IAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 66

Query: 658 IVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  A
Sbjct: 67  GMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGA 126

Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
           D+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 127 DMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYA 186

Query: 771 VISYQTAWMKTHYPVEFLAASMT 793
           ++SYQT W+K HYP EF+AA MT
Sbjct: 187 LVSYQTLWLKAHYPAEFMAAGMT 209


>gi|223469663|gb|ACM90174.1| DnaE [Vibrio parahaemolyticus]
 gi|223469665|gb|ACM90175.1| DnaE [Vibrio parahaemolyticus]
 gi|223469681|gb|ACM90183.1| DnaE [Vibrio parahaemolyticus]
          Length = 196

 Score =  104 bits (259), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 104/200 (52%), Positives = 135/200 (67%), Gaps = 8/200 (4%)

Query: 259 EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
           +M  +F+D+PEALEN+VEIA+RC+  +++                  EE   L  K+  G
Sbjct: 1   DMCELFADIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPTEGMEETEFLVMKSREG 55

Query: 319 LEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
           LE RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVG
Sbjct: 56  LEERLEFLFPDEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVG 115

Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
           PGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V 
Sbjct: 116 PGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVA 175

Query: 436 NKYGHERVAQIITFGSLQAK 455
             YG + V+QIITFG++ AK
Sbjct: 176 EMYGRDAVSQIITFGTMAAK 195


>gi|223469667|gb|ACM90176.1| DnaE [Vibrio parahaemolyticus]
 gi|223469671|gb|ACM90178.1| DnaE [Vibrio parahaemolyticus]
 gi|223469675|gb|ACM90180.1| DnaE [Vibrio parahaemolyticus]
 gi|223469677|gb|ACM90181.1| DnaE [Vibrio parahaemolyticus]
 gi|223469687|gb|ACM90186.1| DnaE [Vibrio parahaemolyticus]
 gi|223469689|gb|ACM90187.1| DnaE [Vibrio parahaemolyticus]
 gi|223469693|gb|ACM90189.1| DnaE [Vibrio parahaemolyticus]
 gi|223469695|gb|ACM90190.1| DnaE [Vibrio parahaemolyticus]
 gi|223469697|gb|ACM90191.1| DnaE [Vibrio parahaemolyticus]
          Length = 196

 Score =  104 bits (259), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 105/200 (52%), Positives = 135/200 (67%), Gaps = 8/200 (4%)

Query: 259 EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
           EM  +F+D+PEALEN+VEIA+RC+  +++                  EE   L  K+  G
Sbjct: 1   EMCELFADIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPTEGMEETEFLVMKSREG 55

Query: 319 LEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
           LE RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVG
Sbjct: 56  LEERLEFLFPDEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVG 115

Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
           PGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V 
Sbjct: 116 PGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVA 175

Query: 436 NKYGHERVAQIITFGSLQAK 455
             YG + V+QIITFG++ AK
Sbjct: 176 EMYGRDAVSQIITFGTMAAK 195


>gi|223469661|gb|ACM90173.1| DnaE [Vibrio parahaemolyticus]
 gi|223469669|gb|ACM90177.1| DnaE [Vibrio parahaemolyticus]
 gi|223469679|gb|ACM90182.1| DnaE [Vibrio parahaemolyticus]
 gi|223469683|gb|ACM90184.1| DnaE [Vibrio parahaemolyticus]
 gi|223469691|gb|ACM90188.1| DnaE [Vibrio parahaemolyticus]
          Length = 196

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 105/200 (52%), Positives = 135/200 (67%), Gaps = 8/200 (4%)

Query: 259 EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
           EM  +F+D+PEALEN+VEIA+RC+  +++                  EE   L  K+  G
Sbjct: 1   EMCELFADIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPTEGMEETEFLVMKSREG 55

Query: 319 LEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
           LE RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVG
Sbjct: 56  LEERLEFLFPNEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVG 115

Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
           PGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V 
Sbjct: 116 PGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVA 175

Query: 436 NKYGHERVAQIITFGSLQAK 455
             YG + V+QIITFG++ AK
Sbjct: 176 EMYGRDAVSQIITFGTMAAK 195


>gi|300932140|ref|ZP_07147424.1| DNA polymerase III, alpha subunit [Escherichia coli MS 187-1]
 gi|300460097|gb|EFK23590.1| DNA polymerase III, alpha subunit [Escherichia coli MS 187-1]
          Length = 209

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 109/203 (53%), Positives = 150/203 (73%), Gaps = 7/203 (3%)

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           ++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ +
Sbjct: 7   IAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 66

Query: 658 IVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  A
Sbjct: 67  GMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGA 126

Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
           D+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 127 DMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYA 186

Query: 771 VISYQTAWMKTHYPVEFLAASMT 793
           ++SYQT W+K HYP EF+AA  T
Sbjct: 187 LVSYQTLWLKAHYPAEFMAAGKT 209


>gi|300920132|ref|ZP_07136584.1| DNA polymerase III, alpha subunit [Escherichia coli MS 115-1]
 gi|300412845|gb|EFJ96155.1| DNA polymerase III, alpha subunit [Escherichia coli MS 115-1]
          Length = 208

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 106/198 (53%), Positives = 147/198 (74%), Gaps = 7/198 (3%)

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           ++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ +
Sbjct: 7   IAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 66

Query: 658 IVV--YNNRKNGKEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            +V  + +RK+G+E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  A
Sbjct: 67  GMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGA 126

Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYA 770
           D+LRRAMGKK  EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA
Sbjct: 127 DMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYA 186

Query: 771 VISYQTAWMKTHYPVEFL 788
           ++SYQT W+K HYP EF+
Sbjct: 187 LVSYQTLWLKAHYPAEFM 204


>gi|270661252|ref|ZP_06222402.1| DNA polymerase III, alpha subunit [Haemophilus influenzae HK1212]
 gi|270316901|gb|EFA28605.1| DNA polymerase III, alpha subunit [Haemophilus influenzae HK1212]
          Length = 115

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 38/66 (57%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          +   P FVHL+ H+ +S+++  + +  ++   AA++  A+ +TD  N    + F  +  +
Sbjct: 1  MSSQPRFVHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVRFYGEMLS 60

Query: 65 AGIQPI 70
          +G++PI
Sbjct: 61 SGMKPI 66


>gi|146320383|ref|YP_001200094.1| DNA polymerase III, alpha subunit [Streptococcus suis 98HAH33]
 gi|145691189|gb|ABP91694.1| DNA polymerase III, alpha subunit [Streptococcus suis 98HAH33]
          Length = 234

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 18/128 (14%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L   + Y+ ++  +++ + + +       A+ I D N+L++A  F +     G+QPII
Sbjct: 3   AQLDTKTVYTFMDSMVTIESYVGRGKELGYHALGIMDKNSLYAAYSFMESCNKMGLQPII 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           GC+LD  +Q   +                L+  T  GY+ L+++ +   +  Q       
Sbjct: 63  GCELDWKLQGEEQDITTQ-----------LIALTTRGYRNLLKIST-AKMTGQD------ 104

Query: 132 CLSWLQEI 139
               +++ 
Sbjct: 105 DFETIRQY 112


>gi|223469673|gb|ACM90179.1| DnaE [Vibrio parahaemolyticus]
          Length = 196

 Score =  102 bits (255), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 104/200 (52%), Positives = 134/200 (67%), Gaps = 8/200 (4%)

Query: 259 EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
           EM  +F+D+PEALEN+VEIA+RC+  +++                  EE   L  K+  G
Sbjct: 1   EMCELFADIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPTEGMEETEFLVMKSREG 55

Query: 319 LEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
           LE RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVG
Sbjct: 56  LEERLEFLFPNEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVG 115

Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
           PGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V 
Sbjct: 116 PGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVA 175

Query: 436 NKYGHERVAQIITFGSLQAK 455
             YG + V+ IITFG++ AK
Sbjct: 176 EMYGRDAVSHIITFGTMAAK 195


>gi|223469685|gb|ACM90185.1| DnaE [Vibrio parahaemolyticus]
          Length = 196

 Score =  102 bits (255), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 105/200 (52%), Positives = 135/200 (67%), Gaps = 8/200 (4%)

Query: 259 EMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAG 318
           EM  +F+D+PEALEN+VEIA+RC+  +++                  EE   L  K+  G
Sbjct: 1   EMCELFADIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPTEGMEETEFLVMKSREG 55

Query: 319 LEVRLAQGAIA---KGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVG 375
           LE RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVG
Sbjct: 56  LEERLEFLFPEEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVG 115

Query: 376 PGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQ 435
           PGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V 
Sbjct: 116 PGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVA 175

Query: 436 NKYGHERVAQIITFGSLQAK 455
             YG + V+QIITFG++ AK
Sbjct: 176 EMYGRDAVSQIITFGTMAAK 195


>gi|309804243|ref|ZP_07698320.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 11V1-d]
 gi|308163646|gb|EFO65916.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 11V1-d]
          Length = 674

 Score =  102 bits (255), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 122/743 (16%), Positives = 228/743 (30%), Gaps = 173/743 (23%)

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                 Y          F D   A E  ++     +  ++   PI         ++  KE
Sbjct: 1   MPDLHFYTTQEMLDAFSFLDPKIAEEIVIKNTNIIADKIENVEPIKSGLYPPHIENADKE 60

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQW 366
            E    +KA            +      +  + RL++EL  I    ++  +LI    +  
Sbjct: 61  MEQLTYDKAHE----------LYGNPLPKIVKDRLEYELKSIISNGYAVIYLISQRLVAK 110

Query: 367 AKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR--------------------------- 399
           + K+   VG  RGS   S+ A    IT+++PL                            
Sbjct: 111 SNKDGYLVG-SRGSVGSSLVATMSGITEVNPLAPHYRCPNCKYSQFFEKGEYGSGYDLPD 169

Query: 400 --------------FSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
                           + F  FL      +PD D++F  D +     Y++  +G +   +
Sbjct: 170 KKCPKCNADLAKDGQDIPFATFLGFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYR 229

Query: 446 IITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
             T G++  K A   V                            +   D++  +      
Sbjct: 230 AGTIGTVADKIAYGYV----------------------------KHYEDENELKLRNAE- 260

Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNM 560
                L  +SQ   G+ R    H AGIV    D  +    P+             T F+ 
Sbjct: 261 -----LDRLSQGASGVKRTTGQHPAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDF 315

Query: 561 KWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG---- 616
             I    ++KFD LG    T+++     + Q    VD   IP  D     L +       
Sbjct: 316 HSIHD-NILKFDILGHDDPTMIR-----MLQDLSGVDPLTIPPCDPGVMSLFSGTDILGV 369

Query: 617 ----------TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKN 666
                     TLG+ +  +  +R  LE  +P    +++ +  L                N
Sbjct: 370 TPEQIGVNTGTLGVPEFGTKFVRGMLEETKPTTFSELLQISGLSHG-------TDVWLGN 422

Query: 667 GKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMD 726
            ++ I      +  ++     ++           +        A     ++        +
Sbjct: 423 AEDLINKGICKLKNVIGCRDNIMT--------DLIHWDVPPEVAFSTMESVRHGKGISDE 474

Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
                    +    I      +  ++      Y F K+HA AY +++ + AW K +YPV 
Sbjct: 475 N----MAILSKNKNIPDWYIQSCLKI-----KYMFPKAHATAYILMALRIAWFKVYYPVI 525

Query: 787 FLAASMTLEMDNVEKIKK---------------------------------FCQDARQFN 813
           +  + +++  D  + +                                      +  +  
Sbjct: 526 YYTSYLSVRADLFDIVAMSHGKNTVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLERG 585

Query: 814 IQIMPPSVNTPCV-DFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
           I I    +      +FK+  ++ I      + G+G   A+ I+ A  ++PF S ED   R
Sbjct: 586 ININMVDIEKSDALNFKILDEHNILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLSIR 645

Query: 872 VDSKKLNRRVLESLVFAGALDCF 894
               K+++ ++E     G LD  
Sbjct: 646 ---GKVSQTIMEYFENNGVLDGL 665


>gi|182626383|ref|ZP_02954137.1| DNA polymerase III PolC-type [Clostridium perfringens D str.
           JGS1721]
 gi|177908334|gb|EDT70882.1| DNA polymerase III PolC-type [Clostridium perfringens D str.
           JGS1721]
          Length = 391

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 71/443 (16%), Positives = 138/443 (31%), Gaps = 99/443 (22%)

Query: 532 IVIGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDF 588
           +V  D  +    P+         D+  T F+   I    L+K D LG    T+L+   D 
Sbjct: 2   VVPNDNEIYNFCPIQHPADDVNTDIITTHFDYHSI-SGRLLKLDILGHDDPTVLRMLQDL 60

Query: 589 LAQRGVKVDLSLIPFDDHET---------YHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
                  + L+        T           L    G+ G+ +  +  +RQ L   QP  
Sbjct: 61  TGLDPKTIPLNDPKVISLFTSPDALGVTKEELGCEVGSYGLPEFGTKFVRQMLVDTQPKS 120

Query: 640 IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
             D++ +  L          V+ N      K       +   +     +++Y        
Sbjct: 121 FADLVRISGLSH-----GTDVWLNNAQYFIKEGYT--TLKDCIATRDDIMVYL------- 166

Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            +        A  +   + K      D +     +   +  +      +   +      Y
Sbjct: 167 -MYKDLPPKTAFTIMEKVRKGKGLSEDDE-----ALMREKNVPDWYIESCKRI-----KY 215

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------------- 800
            F K HA AY +++ + A+ K +YP  +     T+  D+ +                   
Sbjct: 216 MFPKGHAVAYVMMAVRIAYYKVYYPEAYYTTYFTVRADDFDADLICKGEEAIKAKMEELN 275

Query: 801 --------------KIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGV 845
                          I +   +  +  +  +   +       FK+ ++ I   L A++GV
Sbjct: 276 SLGNNISVKEKGLLTILEISYEMYKRGLNFLKVDLYKSEATKFKIEEDGIRPPLNALQGV 335

Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQSL 905
           G   A+ I+E   +  F S ED   R    K+++ V+E+L   G L+             
Sbjct: 336 GDNAAKSIVECRVNGEFISKEDLRLR---SKVSKTVIETLDNHGCLEGM----------- 381

Query: 906 DNIQKYAQWVEKNRTNKHENIFA 928
                        + +   ++F 
Sbjct: 382 -------------QESNQLSLFG 391


>gi|156069389|gb|ABU44607.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
          Length = 185

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 99/190 (52%), Positives = 127/190 (66%), Gaps = 8/190 (4%)

Query: 266 DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA- 324
           D+PEALEN+VEIA+RC+  +++                  EE   L  K+  GLE RL  
Sbjct: 1   DIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPTEGMEETEFLVMKSREGLEERLEF 55

Query: 325 --QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                  +     +Y +R   EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGA
Sbjct: 56  LFPNEEERKKRRPEYDERFQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGA 115

Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
           GS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + 
Sbjct: 116 GSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDA 175

Query: 443 VAQIITFGSL 452
           V+QIITFG++
Sbjct: 176 VSQIITFGTM 185


>gi|156069377|gb|ABU44601.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
          Length = 185

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 100/190 (52%), Positives = 128/190 (67%), Gaps = 8/190 (4%)

Query: 266 DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA- 324
           D+PEALEN+VEIA+RC+  +++                  EE   L  K+  GLE RL  
Sbjct: 1   DIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPTEGMEETEFLVMKSREGLEERLEF 55

Query: 325 --QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                  +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGA
Sbjct: 56  LFPDVEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGA 115

Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
           GS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + 
Sbjct: 116 GSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDA 175

Query: 443 VAQIITFGSL 452
           V+QIITFG++
Sbjct: 176 VSQIITFGTM 185


>gi|156069341|gb|ABU44583.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069343|gb|ABU44584.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069345|gb|ABU44585.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069347|gb|ABU44586.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069349|gb|ABU44587.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069351|gb|ABU44588.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069353|gb|ABU44589.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069355|gb|ABU44590.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069359|gb|ABU44592.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069361|gb|ABU44593.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069363|gb|ABU44594.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069365|gb|ABU44595.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069367|gb|ABU44596.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069369|gb|ABU44597.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069371|gb|ABU44598.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069373|gb|ABU44599.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069375|gb|ABU44600.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069379|gb|ABU44602.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069381|gb|ABU44603.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069383|gb|ABU44604.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069385|gb|ABU44605.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069387|gb|ABU44606.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|193221945|gb|ACF16337.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
          Length = 185

 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 100/190 (52%), Positives = 128/190 (67%), Gaps = 8/190 (4%)

Query: 266 DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA- 324
           D+PEALEN+VEIA+RC+  +++                  EE   L  K+  GLE RL  
Sbjct: 1   DIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPTEGMEETEFLVMKSREGLEERLEF 55

Query: 325 --QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                  +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGA
Sbjct: 56  LFPDEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGA 115

Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
           GS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + 
Sbjct: 116 GSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDA 175

Query: 443 VAQIITFGSL 452
           V+QIITFG++
Sbjct: 176 VSQIITFGTM 185


>gi|156069319|gb|ABU44572.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069321|gb|ABU44573.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069323|gb|ABU44574.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069325|gb|ABU44575.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069327|gb|ABU44576.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069329|gb|ABU44577.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069331|gb|ABU44578.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069333|gb|ABU44579.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069335|gb|ABU44580.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069337|gb|ABU44581.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069339|gb|ABU44582.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069357|gb|ABU44591.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|193221941|gb|ACF16335.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|193221943|gb|ACF16336.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
          Length = 185

 Score =  102 bits (253), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 100/190 (52%), Positives = 128/190 (67%), Gaps = 8/190 (4%)

Query: 266 DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA- 324
           D+PEALEN+VEIA+RC+  +++                  EE   L  K+  GLE RL  
Sbjct: 1   DIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPTEGMEETEFLVMKSREGLEERLEF 55

Query: 325 --QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                  +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGA
Sbjct: 56  LFPNEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGA 115

Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
           GS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + 
Sbjct: 116 GSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDA 175

Query: 443 VAQIITFGSL 452
           V+QIITFG++
Sbjct: 176 VSQIITFGTM 185


>gi|260579154|ref|ZP_05847046.1| error-prone DNA polymerase [Corynebacterium jeikeium ATCC 43734]
 gi|258602753|gb|EEW16038.1| error-prone DNA polymerase [Corynebacterium jeikeium ATCC 43734]
          Length = 208

 Score =  101 bits (252), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 45/164 (27%), Gaps = 38/164 (23%)

Query: 888  AGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVEN 947
            AGAL   G +R Q + +                 +   +     G     +        +
Sbjct: 1    AGALGSLGLTRRQAVWAAGVA-----------ATERPGMLPGTSG-----VHAPALPGMS 44

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRK--------------------MGIKGYEESV 987
            +     +E    G   + HP+ + +  L +                      +   +  +
Sbjct: 45   AFEMVASELATTGVTTAEHPVHLLREYLDEWHLRPAPRGAHSGDTAPRGGAAVVTADSLL 104

Query: 988  ATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                G  +R+A +V  +Q+  T  G  + +    +         
Sbjct: 105  RVPDGARLRVAGVVTHRQRPATAGG--VVFFGLEDETGLANIVV 146


>gi|19548812|gb|AAL90803.1| polymerase III subunit alpha [Escherichia coli]
          Length = 209

 Score =  101 bits (252), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 89/209 (42%), Positives = 137/209 (65%), Gaps = 12/209 (5%)

Query: 502 RLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMK 561
             AD  V  L+++++KLEG+ R+A  HA G+VI    ++   P+Y D     PVTQF+  
Sbjct: 1   YEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKS 60

Query: 562 WIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV-----DLSLIPFDDHETYHLLTTKG 616
            +E AGL+KFDFLGL+TLT++  +L+ + +R  K      D++ IP DD +++ +L    
Sbjct: 61  DVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSE 120

Query: 617 TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNGKEKIVS- 673
           T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G+E+I   
Sbjct: 121 TTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYP 180

Query: 674 ----IHPLIDPMLKETQGVIIYQEQVMQI 698
                H  + P+L+ T G+I+YQEQVMQI
Sbjct: 181 DVQWQHESLKPVLEPTYGIILYQEQVMQI 209


>gi|167948888|ref|ZP_02535962.1| DNA polymerase III, alpha subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 158

 Score =  101 bits (251), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 89/126 (70%), Positives = 101/126 (80%)

Query: 347 VIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFER 406
           +I +M F GYFLIVADFIQWAK N IPVGPGRGSGAGS+ AY L ITD+DP+   LLFER
Sbjct: 1   MINQMGFPGYFLIVADFIQWAKDNAIPVGPGRGSGAGSLVAYVLKITDLDPIEHELLFER 60

Query: 407 FLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQ 466
           FLNP+R+SMPDFDIDFC DRRDEVI YV  KYG + V+QIIT+GS+ AKA +RDVGR L 
Sbjct: 61  FLNPERVSMPDFDIDFCMDRRDEVIDYVARKYGRDSVSQIITYGSMAAKAVVRDVGRVLG 120

Query: 467 MPYSQV 472
            PY   
Sbjct: 121 HPYGFY 126


>gi|193221947|gb|ACF16338.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
          Length = 185

 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 99/190 (52%), Positives = 128/190 (67%), Gaps = 8/190 (4%)

Query: 266 DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA- 324
           D+PEALEN+VEIA+RC+  +++                  +E   L  K+  GLE RL  
Sbjct: 1   DIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPTEGMKETEFLVMKSREGLEERLEF 55

Query: 325 --QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                  +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGA
Sbjct: 56  LFPDEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGA 115

Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
           GS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + 
Sbjct: 116 GSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDA 175

Query: 443 VAQIITFGSL 452
           V+QIITFG++
Sbjct: 176 VSQIITFGTM 185


>gi|47176989|ref|YP_015600.1| DNA polymerase III alpha chain [Oligotropha carboxidovorans OM5]
 gi|7159964|emb|CAB76244.1| DNA-polymerase III-alpha chain [Oligotropha carboxidovorans OM5]
          Length = 112

 Score =  101 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +  LQV S +S L GA S   +  + A     A+A+ D N+L   +   + A A G++ 
Sbjct: 5  RYAELQVTSQFSFLRGASSCEELFAQAALLGIEALAVADRNSLAGVVRAHEAANATGVRL 64

Query: 70 I 70
          I
Sbjct: 65 I 65


>gi|42782906|ref|NP_980153.1| DNA polymerase III, alpha subunit [Bacillus cereus ATCC 10987]
 gi|42738833|gb|AAS42761.1| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus
           cereus ATCC 10987]
          Length = 483

 Score =  101 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 83/523 (15%), Positives = 164/523 (31%), Gaps = 111/523 (21%)

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           + F  + +     Y +  +G + V +  T G++  K A   V +     ++   R  +  
Sbjct: 15  LYFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE-- 71

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDR 537
                                          +  +     G+ R    H  GI+      
Sbjct: 72  -------------------------------IDRLVAGCTGVKRTTGQHPGGIIVVPDYM 100

Query: 538 PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----- 589
            +    P+     S   +   T F+   I    L+K D LG    T+++   D       
Sbjct: 101 DIFDFSPIQYPADSIGAEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPK 159

Query: 590 ---AQRGVKVDLSLIPFDDHETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIA 645
                    + +   P     T   +  K    GI +  +  +RQ LE  +P    +++ 
Sbjct: 160 TIPTDDPEVMKIFSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQ 219

Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
           +  L                N  E I +    +  ++     +++Y         +  G 
Sbjct: 220 ISGLSHG-------TDVWLGNANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGL 264

Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
             S A  +  ++ K      +     +      N +      +  ++      Y F K+H
Sbjct: 265 DPSLAFKIMESVRKGKGVPEE-----WEEDMKNNNVPGWYIDSCKKI-----KYMFPKAH 314

Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------------------- 800
           AAAY +++ + A+ K H+ + F AA  T+  D+ +                         
Sbjct: 315 AAAYVLMAVRIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDA 374

Query: 801 --------KIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTAR 851
                    + +   +  +         +      DF +  + +     A+ G+GT  A 
Sbjct: 375 APKEKSLLTVLEMTLEMCERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAAL 434

Query: 852 HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I+EA  +  F S ED   R    K+++ ++E L   G L   
Sbjct: 435 SIVEARKNGEFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 474


>gi|32481342|gb|AAP84018.1| catalase [Vibrio cholerae]
          Length = 188

 Score =  101 bits (250), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 86/162 (53%), Positives = 110/162 (67%), Gaps = 3/162 (1%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +            E+ L  K+  GLE RL         +     +Y +RL  EL+VI +
Sbjct: 26  EYFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQ 85

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 86  MGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 145

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSL 452
           +R+SMPDFD+DFC D+RD+VI +V   YG + V+QIITFG++
Sbjct: 146 ERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQIITFGTM 187


>gi|257487764|ref|ZP_05641805.1| error-prone DNA polymerase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 226

 Score =  101 bits (250), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 106/219 (48%), Gaps = 11/219 (5%)

Query: 265 SDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA 324
                 L  +V IARRC+F L+      P  +  +     +   + LR     G   R  
Sbjct: 13  HYPDWLLAESVRIARRCTFDLKQLKYEYPHELVPKG----QTPTSWLRELTERGARKRWP 68

Query: 325 QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGS 384
            G           R +++ EL +I   KF  YFL V D +++A+  +I    GRGS A S
Sbjct: 69  NGL------TPATRAQVEKELALITEKKFDSYFLTVHDIVEFARSQHIL-CQGRGSAANS 121

Query: 385 VTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVA 444
              YAL IT+++P + +LLFERF++ +R   PD D+DF  DRR+EVI+Y+  +YG  R A
Sbjct: 122 AVCYALGITELNPEKSNLLFERFISKERNEPPDIDVDFEHDRREEVIQYIFRRYGRGRAA 181

Query: 445 QIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDP 483
                 +     A+RDV + L +P  Q++ L        
Sbjct: 182 LTAVASTYHGSGAVRDVAKVLGLPPDQINALADAFSRWS 220


>gi|118479038|ref|YP_896189.1| DNA polymerase III, subunit alpha [Bacillus thuringiensis str. Al
           Hakam]
 gi|196044620|ref|ZP_03111855.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
 gi|225865797|ref|YP_002751175.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
 gi|229186055|ref|ZP_04313225.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
 gi|118418263|gb|ABK86682.1| DNA polymerase III, alpha subunit [Bacillus thuringiensis str. Al
           Hakam]
 gi|196024655|gb|EDX63327.1| DNA polymerase III PolC-type (PolIII) [Bacillus cereus 03BB108]
 gi|225789817|gb|ACO30034.1| DNA polymerase III, PolC-type [Bacillus cereus 03BB102]
 gi|228597474|gb|EEK55124.1| DNA polymerase III polC-type [Bacillus cereus BGSC 6E1]
 gi|324327712|gb|ADY22972.1| DNA polymerase III subunit alpha, Gram-positive type [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 483

 Score =  101 bits (250), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 83/523 (15%), Positives = 164/523 (31%), Gaps = 111/523 (21%)

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           + F  + +     Y +  +G + V +  T G++  K A   V +     ++   R  +  
Sbjct: 15  LYFSGEYQPRAHNYTKVLFGEDYVYRAGTIGTVAEKTAYGYV-KGYANDHNLTIRNAE-- 71

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGDR 537
                                          +  +     G+ R    H  GI+      
Sbjct: 72  -------------------------------IDRLVAGCTGVKRTTGQHPGGIIVVPDYM 100

Query: 538 PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL----- 589
            +    P+     S   +   T F+   I    L+K D LG    T+++   D       
Sbjct: 101 DIFDFSPIQYPADSIGAEWRTTHFDFHSIHD-NLLKLDILGHDDPTVIRMLQDLSGIDPK 159

Query: 590 ---AQRGVKVDLSLIPFDDHETYHLLTTKGTL-GIFQLESSGMRQALEGMQPDCIEDIIA 645
                    + +   P     T   +  K    GI +  +  +RQ LE  +P    +++ 
Sbjct: 160 TIPTDDPEVMKIFSGPESLGVTEEQINCKTGTLGIPEFGTKFVRQMLEETKPTTFSELVQ 219

Query: 646 LVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGY 705
           +  L                N  E I +    +  ++     +++Y         +  G 
Sbjct: 220 ISGLSHG-------TDVWLGNANELIYNGTCTLSEVIGCRDDIMVYL--------IYQGL 264

Query: 706 SLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSH 765
             S A  +  ++ K      +     +      N +      +  ++      Y F K+H
Sbjct: 265 DPSLAFKIMESVRKGKGVPEE-----WEEDMKSNNVPGWYIDSCKKI-----KYMFPKAH 314

Query: 766 AAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE------------------------- 800
           AAAY +++ + A+ K H+ + F AA  T+  D+ +                         
Sbjct: 315 AAAYVLMAVRIAYFKVHFALLFYAAYFTVRADDFDVEAMAKGSASIRARIDEIAQKGLDA 374

Query: 801 --------KIKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGVGTTTAR 851
                    + +   +  +         +      DF +  + +     A+ G+GT  A 
Sbjct: 375 APKEKSLLTVLEMTLEMCERGYSFQKVDLYRSHATDFIIDGDSLIPPFNAVPGLGTNAAL 434

Query: 852 HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
            I+EA  +  F S ED   R    K+++ ++E L   G L   
Sbjct: 435 SIVEARKNGEFLSKEDLQQR---SKVSKTIIEYLDSQGCLGDL 474


>gi|317474981|ref|ZP_07934250.1| dnaE protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908884|gb|EFV30569.1| dnaE protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 585

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 81/413 (19%), Positives = 140/413 (33%), Gaps = 36/413 (8%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           FV+L +H+SY LL    S  ++  K       A+ I D N + + L   ++    G++ I
Sbjct: 107 FVNLGIHTSYELLNACCSPEDLCRKAKWLGHTAVGICDRNTMAATLNLQKECANTGLKHI 166

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G  L +  ++                   +     EG   L+ +  R  ++D    ++R
Sbjct: 167 FGYSLTMMHEEERVGLK-------------IYALDNEGLHNLLRIQ-RAVMVDSEDNTLR 212

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
                L       +++           A      +   K             Y       
Sbjct: 213 --YEQLLMYAAGCVVVF--AIRSVYWMAGHPKQVKRIRKGAEAVYYQVDANEY------- 261

Query: 191 GYDRYRESQVVQLAYTHE-----------LPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
             DR    Q+  L Y              +  V   +  ++ ++D     V+  +A    
Sbjct: 262 KADRIDREQLEALKYYFGNCYDADTDSFTVEPVLIPDCYYMDKDDAGYRIVVNKIATGAA 321

Query: 240 VSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKE 299
             Q D         L +    +       ++L   +             +    R    E
Sbjct: 322 HEQSDDQYFKTADELYDTLRPLFSGQWDFDSLFRRMCRPTVEIAGRADASFETGRMFMPE 381

Query: 300 CDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLI 359
                +E E     + +    +             + YR+RLD E+ +I       YFL+
Sbjct: 382 YRMRPEERERYGDRRTMFLRLLDDGLDRKVPEPERERYRERLDEEVYIIESTDNVDYFLV 441

Query: 360 VADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
             D ++ A +  I  G GRGS  GS+ +Y L IT IDPL++ L+F RFL P+R
Sbjct: 442 QWDMVREAHRRGIATGIGRGSAGGSLVSYLLGITSIDPLKYDLIFSRFLVPER 494


>gi|309805518|ref|ZP_07699563.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 09V1-c]
 gi|308165169|gb|EFO67407.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 09V1-c]
          Length = 641

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 117/710 (16%), Positives = 221/710 (31%), Gaps = 173/710 (24%)

Query: 280 RCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQ 339
             +  ++   PI         ++  KE E    +KA            +      +  + 
Sbjct: 1   MIADKIENVEPIKSGLYPPHIENADKEMEQLTYDKAHE----------LYGNPLPKIVKD 50

Query: 340 RLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLR 399
           RL++EL  I    ++  +LI    +  + K+   VG  RGS   S+ A    IT+++PL 
Sbjct: 51  RLEYELKSIISNGYAVIYLISQRLVAKSNKDGYLVG-SRGSVGSSLVATMSGITEVNPLA 109

Query: 400 -----------------------------------------FSLLFERFLNPDRMSMPDF 418
                                                      + F  FL      +PD 
Sbjct: 110 PHYRCPNCKYSQFFEKGEYGSGYDLPDKKCPKCNADLAKDGQDIPFATFLGFHGDKVPDI 169

Query: 419 DIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKL 478
           D++F  D +     Y++  +G +   +  T G++  K A   V                 
Sbjct: 170 DLNFSGDYQPVAHSYIRVMFGPDNSYRAGTIGTVADKIAYGYV----------------- 212

Query: 479 IPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIV--IGD 536
                      +   D++  +           L  +SQ   G+ R    H AGIV    D
Sbjct: 213 -----------KHYEDENELKLRNAE------LDRLSQGASGVKRTTGQHPAGIVVVPND 255

Query: 537 RPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRG 593
             +    P+             T F+   I    ++KFD LG    T+++     + Q  
Sbjct: 256 MDIYDFTPVQYPADDLDAAWLTTHFDFHSIHD-NILKFDILGHDDPTMIR-----MLQDL 309

Query: 594 VKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQLESSGMRQALEGMQPDC 639
             VD   IP  D     L +                 TLG+ +  +  +R  LE  +P  
Sbjct: 310 SGVDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTGTLGVPEFGTKFVRGMLEETKPTT 369

Query: 640 IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
             +++ +  L                N ++ I      +  ++     ++          
Sbjct: 370 FSELLQISGLSHG-------TDVWLGNAEDLINKGICKLKNVIGCRDNIMT--------D 414

Query: 700 QLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADY 759
            +        A     ++        +         +    I      +  ++      Y
Sbjct: 415 LIHWDVPPEVAFSTMESVRHGKGISDEN----MAILSKNKNIPDWYIQSCLKI-----KY 465

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--------------- 804
            F K+HA AY +++ + AW K +YPV +  + +++  D  + +                 
Sbjct: 466 MFPKAHATAYILMALRIAWFKVYYPVIYYTSYLSVRADLFDIVAMSHGKNTVKAAMKKIR 525

Query: 805 ------------------FCQDARQFNIQIMPPSVNTPCV-DFKV-GDNRIYYSLAAIKG 844
                                +  +  I I    +      +FK+  ++ I      + G
Sbjct: 526 DQGNNASTKDKTLLTVLEIANECLERGININMVDIEKSDALNFKILDEHNILAPFNTVPG 585

Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
           +G   A+ I+ A  ++PF S ED   R    K+++ ++E     G LD  
Sbjct: 586 LGDNVAKQIVAARDEQPFLSKEDLSIR---GKVSQTIMEYFENNGVLDGL 632


>gi|23321269|gb|AAN23129.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|23321271|gb|AAN23130.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|23321273|gb|AAN23131.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 201

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 109/206 (52%), Gaps = 10/206 (4%)

Query: 163 SSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRY-RESQVVQLAYTHELPLVATNNSLFLS 221
           + Q  E+ +  ++  F D  Y+ L R    D        + +A  ++LP+VATN  +F++
Sbjct: 1   NQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHFALDVAEQYDLPVVATNEVVFIT 60

Query: 222 EEDYEAHDVLMAVAHSTVVSQKDRPR-VTPDHYLKNRSEMVSIFSDLPEALENTVEIARR 280
           EE +EAH++ +A+     +    RP+  +P  YL++ +EM  +F+D+PEAL N+VEIA+R
Sbjct: 61  EESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANSVEIAKR 120

Query: 281 CSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDY 337
           C+  +++       +            E+ L  K+  GLE RL         +     +Y
Sbjct: 121 CNVTVRLGE-----YFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEY 175

Query: 338 RQRLDFELNVIARMKFSGYFLIVADF 363
            +RL  EL+VI +M F GYFLIV +F
Sbjct: 176 DERLQVELDVINQMGFPGYFLIVMEF 201


>gi|300990396|ref|ZP_07179194.1| DNA polymerase III, alpha subunit [Escherichia coli MS 200-1]
 gi|300305749|gb|EFJ60269.1| DNA polymerase III, alpha subunit [Escherichia coli MS 200-1]
          Length = 192

 Score = 99.9 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 103/191 (53%), Positives = 139/191 (72%), Gaps = 7/191 (3%)

Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNG 667
            +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G
Sbjct: 1   DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 60

Query: 668 KEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
           +E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  
Sbjct: 61  REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 120

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
           EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K H
Sbjct: 121 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 180

Query: 783 YPVEFLAASMT 793
           YP EF+A    
Sbjct: 181 YPAEFMAGGKN 191


>gi|258614448|ref|ZP_05712218.1| DNA polymerase III, alpha subunit [Enterococcus faecium DO]
          Length = 85

 Score = 99.5 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 37/73 (50%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3  FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71 IGCQLDIDMQDNL 83
          IG  L    ++ +
Sbjct: 63 IGLHLSYTYEEKI 75


>gi|300900776|ref|ZP_07118921.1| DNA polymerase III, alpha subunit [Escherichia coli MS 198-1]
 gi|300355741|gb|EFJ71611.1| DNA polymerase III, alpha subunit [Escherichia coli MS 198-1]
          Length = 189

 Score = 99.5 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 102/186 (54%), Positives = 138/186 (74%), Gaps = 7/186 (3%)

Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV--YNNRKNG 667
            +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ + +V  + +RK+G
Sbjct: 1   DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 60

Query: 668 KEKIVS-----IHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIK 722
           +E+I        H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  AD+LRRAMGKK  
Sbjct: 61  REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 120

Query: 723 EEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTH 782
           EEM KQ+  F  GA KNGI+  +A+ IF+L+ KFA YGFNKSH+AAYA++SYQT W+K H
Sbjct: 121 EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 180

Query: 783 YPVEFL 788
           YP EF+
Sbjct: 181 YPAEFM 186


>gi|293560685|ref|ZP_06677169.1| DNA polymerase III subunit alpha [Enterococcus faecium E1162]
 gi|291605359|gb|EFF34809.1| DNA polymerase III subunit alpha [Enterococcus faecium E1162]
          Length = 85

 Score = 99.1 bits (245), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 35/70 (50%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F  L   +SYSLL+  + +   + +       ++AITD + L+ A EF +     G+QPI
Sbjct: 3  FPQLYTITSYSLLQSTIRIREYVQEAKKQGYTSLAITDKDVLYGAPEFYRICVEEGVQPI 62

Query: 71 IGCQLDIDMQ 80
          IG  L    +
Sbjct: 63 IGLHLSYTYE 72


>gi|32481344|gb|AAP84019.1| catalase [Vibrio cholerae]
          Length = 183

 Score = 98.7 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 86/161 (53%), Positives = 109/161 (67%), Gaps = 3/161 (1%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +            E+ L  K+  GLE RL         +     +Y +RL  EL+VI +
Sbjct: 23  EYFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQ 82

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 83  MGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 142

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
           +R+SMPDFD+DFC D+RD+VI +V   YG + V+QIITFG+
Sbjct: 143 ERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQIITFGT 183


>gi|227872422|ref|ZP_03990766.1| possible DNA-directed DNA polymerase III alpha subunit
           [Oribacterium sinus F0268]
 gi|227841719|gb|EEJ52005.1| possible DNA-directed DNA polymerase III alpha subunit
           [Oribacterium sinus F0268]
          Length = 821

 Score = 97.9 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 12/141 (8%)

Query: 76  DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSW 135
            ++  D+L++   GK        I+LL     G   L  LVS+ +L    +   RI  S 
Sbjct: 687 SLEEIDSLEVDQVGKVRKLPSYHIILLAKNDIGRINLYRLVSQSHLQ-YFRMKPRIPKSL 745

Query: 136 LQEIGTEGLIMLTGGSSGPIDRAFFFN-SSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDR 194
           L++   EGLI+ +  SSG + +A       Q   +    +        Y+ +Q       
Sbjct: 746 LKKY-REGLIIGSACSSGELFQAMVRGADDQQLLEIASFYD-------YLEIQPLGNNAY 797

Query: 195 YRESQVVQLAYTHELPLVATN 215
             ES   + +   E  L+A N
Sbjct: 798 MLESD--RFSAETEEDLIAYN 816



 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 4/90 (4%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG----I 67
           V L +H+  S ++G   +   +D+      PA+AITD   + +  +        G    +
Sbjct: 429 VELHLHTKMSDMDGVSDVEKYIDRALDFGMPAMAITDHGVVQAFPDAMAYLKKIGRQKDL 488

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           Q I G +  +    +  + N  K    +  
Sbjct: 489 QLIYGMEGYLVNDLDSIVKNACKRDLSSTT 518


>gi|297181302|gb|ADI17494.1| DNA polymerase III, alpha subunit [uncultured beta
          proteobacterium HF0130_04F21]
          Length = 66

 Score = 97.9 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          + +S SFVHL++H+ YS+ +  + +  +++K   D+QPAI ITD  N F+ ++F + A  
Sbjct: 1  MSES-SFVHLRLHTEYSISDSIVKIPRVIEKACLDRQPAIGITDLGNTFALMKFYRNARK 59

Query: 65 AGIQPII 71
           GI+PI+
Sbjct: 60 KGIKPIL 66


>gi|309805552|ref|ZP_07699597.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c]
 gi|308165203|gb|EFO67441.1| PHP domain protein [Lactobacillus iners LactinV 09V1-c]
          Length = 758

 Score = 97.6 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 58/153 (37%), Gaps = 23/153 (15%)

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + +L     G + + +LVS         +  R  LS L+ +  EGL+  +G   G +  
Sbjct: 595 HMTVLAINKVGLKNMYKLVSLASTK-YFYRLPRTPLSELKRLH-EGLLYGSGCLQGDVFI 652

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-----HRGYD---------RYRESQVVQL 203
           +          ++   +        ++ +Q      H   D         +   + + +L
Sbjct: 653 SMMQKGYDATREKARIYD-------FLEVQPPAAYQHLLDDKLIKDKKELQEIITNIYKL 705

Query: 204 AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
                +P+VAT+++ ++ ++D     +L++   
Sbjct: 706 GKELGIPVVATSDAHYIDKKDAIYRKILLSAQK 738



 Score = 79.4 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   S  + +       Q AIAITD  ++ +  E        G++ I 
Sbjct: 317 VELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAFPEAYVAGKKNGLKIIY 376

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 377 GYEANMINDQALLVLNPANMDYRGQEYVIF 406


>gi|32481340|gb|AAP84017.1| catalase [Vibrio cholerae]
          Length = 178

 Score = 97.6 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 85/161 (52%), Positives = 108/161 (67%), Gaps = 3/161 (1%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +            E+ L  K+  GLE RL         +     +Y +RL  EL+VI +
Sbjct: 18  EYFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQ 77

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 78  MGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 137

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGS 451
           +R+SMPDFD+DFC D+RD+VI +V   YG + V+ IITFG+
Sbjct: 138 ERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSHIITFGT 178


>gi|156069315|gb|ABU44570.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
 gi|156069317|gb|ABU44571.1| DNA polymerase III alpha subunit [Vibrio parahaemolyticus]
          Length = 185

 Score = 97.6 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 99/190 (52%), Positives = 128/190 (67%), Gaps = 8/190 (4%)

Query: 266 DLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLA- 324
           D+PEALEN+VEIA+RC+  +++                  +E   L  K+  GLE RL  
Sbjct: 1   DIPEALENSVEIAKRCNVTVRLGEYF-----LPAFPTEGMKETEFLVMKSREGLEERLEF 55

Query: 325 --QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGA 382
                  +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N IPVGPGRGSGA
Sbjct: 56  LFPDEEERKRRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGPGRGSGA 115

Query: 383 GSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
           GS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG + 
Sbjct: 116 GSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDA 175

Query: 443 VAQIITFGSL 452
           V+QIITFG++
Sbjct: 176 VSQIITFGTM 185


>gi|32481336|gb|AAP84015.1| catalase [Vibrio cholerae]
          Length = 175

 Score = 97.2 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 85/159 (53%), Positives = 107/159 (67%), Gaps = 3/159 (1%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +            E+ L  K+  GLE RL         +     +Y +RL  EL+VI +
Sbjct: 16  EYFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQ 75

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 76  MGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 135

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
           +R+SMPDFD+DFC D+RD+VI +V   YG + V+QIITF
Sbjct: 136 ERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQIITF 174


>gi|32481348|gb|AAP84021.1| catalase [Vibrio cholerae]
          Length = 177

 Score = 97.2 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 85/159 (53%), Positives = 107/159 (67%), Gaps = 3/159 (1%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +            E+ L  K+  GLE RL         +     +Y +RL  EL+VI +
Sbjct: 19  EYFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQ 78

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 79  MGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 138

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITF 449
           +R+SMPDFD+DFC D+RD+VI +V   YG + V+QIITF
Sbjct: 139 ERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQIITF 177


>gi|153846678|ref|ZP_01993880.1| error-prone DNA polymerase [Vibrio parahaemolyticus AQ3810]
 gi|149744874|gb|EDM56254.1| error-prone DNA polymerase [Vibrio parahaemolyticus AQ3810]
          Length = 144

 Score = 96.8 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 11/115 (9%), Positives = 35/115 (30%), Gaps = 2/115 (1%)

Query: 918  NRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRK 977
             R    +++         ++ ++      +       +    G   + HP+ + +     
Sbjct: 3    ARWAAMDSLSDLPLFHHIEEPSVGYQVQPSEYESLIEDYASTGLSLNRHPITLLEEAGIL 62

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                  ++ V     + + +A +V  +Q   T  G  + + T  +         +
Sbjct: 63   PRFTRMKQLVDKEHKSLVTVAGVVTGRQSPGTAAG--VTFFTLEDDTGNINVVVW 115


>gi|309804220|ref|ZP_07698297.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d]
 gi|308163623|gb|EFO65893.1| PHP domain protein [Lactobacillus iners LactinV 11V1-d]
          Length = 762

 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 53/148 (35%), Gaps = 23/148 (15%)

Query: 98  SIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDR 157
            + +L     G + + +LVS         +  R  LS L+ +  EGL+  +G   G +  
Sbjct: 599 HMTVLAINKVGLKNMYKLVSLASTK-YFYRLPRTPLSELKRLH-EGLLYGSGCLQGDVFI 656

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR-----HRGYD---------RYRESQVVQL 203
           +          ++   +        ++ +Q      H   D         +   + + +L
Sbjct: 657 SMMQKGYDATREKARIYD-------FLEVQPPAAYQHLLDDKLIKDKKELQEIITNIYKL 709

Query: 204 AYTHELPLVATNNSLFLSEEDYEAHDVL 231
                +P+VAT+++ ++ ++        
Sbjct: 710 GKELGIPVVATSDAHYIDKKMQFIVKFY 737



 Score = 79.1 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 37/90 (41%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L +H++ S L+   S  + +       Q AIAITD  ++ +  E        G++ I 
Sbjct: 321 VELHLHTNMSQLDATNSAGDFVKAAKKFDQKAIAITDHADVQAFPEAYVAGKKNGLKIIY 380

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++     L + N     +     ++ 
Sbjct: 381 GYEANMINDQALLVLNPANMDYRGQEYVIF 410


>gi|213422542|ref|ZP_03355607.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 149

 Score = 95.6 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 66/150 (44%), Positives = 96/150 (64%), Gaps = 1/150 (0%)

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPN 481
           FC ++RD+VI +V + YG + V+QIITFG++ AKA +RDVGR L  PY  VDR+ KL+P 
Sbjct: 1   FCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPP 60

Query: 482 DPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQ 541
           DP   +  +A   + +  E   AD  V  L+++++KLEG+ R+A  HA G+VI    ++ 
Sbjct: 61  DPGMTL-AKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITD 119

Query: 542 LVPMYRDVRSDLPVTQFNMKWIEKAGLIKF 571
             P+Y D     PVTQF+   +E AGL+KF
Sbjct: 120 FAPLYCDEEGKHPVTQFDKSDVEYAGLVKF 149


>gi|148996698|ref|ZP_01824416.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70]
 gi|147757273|gb|EDK64312.1| DNA polymerase III PolC [Streptococcus pneumoniae SP11-BS70]
          Length = 910

 Score = 94.9 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  I+   A     A+AITD  N+ S     + A  
Sbjct: 332 MPEGERRVEFHAHTNMSTMDALPEVEEIVATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 391

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 392 AGIQLIYGMEANIVEDRVPIVYNEVEMDLSEATYVVF 428



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/307 (11%), Positives = 81/307 (26%), Gaps = 42/307 (13%)

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
           N+ + +        +    + V    G + + +LVS        +   RI  + L +   
Sbjct: 601 NIDLISPDSYKKARIKHATIYVKNQVGLKNIFKLVSLSNTK-YFEGVPRIPRTVL-DAHR 658

Query: 142 EGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR------------- 188
           EGLI+ +  S G +           A +    +        ++ +               
Sbjct: 659 EGLILGSACSEGEVFDVVVSQGVDAAVEVAKYYD-------FIEVMPPAIYAPLIAKEQV 711

Query: 189 -HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDV---------LMAVAHST 238
                 +     ++++      P++AT N  ++  E+    ++         ++      
Sbjct: 712 KDMEELQTIIKSLIEVGDRLGKPVLATGNVHYIEPEEEIYREIIVRSLGQGAMINRTIGH 771

Query: 239 VVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEK 298
               +  P         N       F     A +  +E     + I +    +       
Sbjct: 772 GEHAQPAPLPKAHFRTTNEMLDEFAFLGEELARKLVIENTNALAEIFESVEVVKGDLYTP 831

Query: 299 ECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFL 358
             D  ++        KA            I           R++ EL  I    F+    
Sbjct: 832 FIDKAEETVAELTYKKAFE----------IYGNPLPDIVDLRIEKELTSILGNGFAVIIW 881

Query: 359 IVADFIQ 365
               +  
Sbjct: 882 HRRCWCN 888


>gi|309799630|ref|ZP_07693854.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302]
 gi|308116752|gb|EFO54204.1| DNA polymerase III PolC-type [Streptococcus infantis SK1302]
          Length = 681

 Score = 94.5 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 39/97 (40%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + +    V    H++ S ++    +  ++   A     A+AITD  N+ S     + A  
Sbjct: 333 MPEGERRVEFHAHTNMSTMDALPEVEELIATAAKWGHKAVAITDHGNVQSFPHGYKAAKK 392

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           AGIQ I G + +I       + N+ +        +V 
Sbjct: 393 AGIQLIYGMEANIVEDRVPIVYNEVEVDLSEATYVVF 429



 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 82  NLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGT 141
           NL + +        V    + V    G + + +LVS        +   RI  + L +   
Sbjct: 602 NLDLISPDSYKKARVKHATIYVKNQVGLKNIFKLVSLSNTQ-YFEGVPRIPRTVL-DAHR 659

Query: 142 EGLIMLTGGSSGPI 155
           EGLI+ +  + G +
Sbjct: 660 EGLILGSACTEGEV 673


>gi|157310964|ref|YP_001468960.1| putative DNA polymerase III alpha subunit [Corynebacterium phage
           P1201]
 gi|95832112|gb|ABF57512.1| putative DNA polymerase III alpha subunit [Corynebacterium phage
           P1201]
          Length = 476

 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 72/280 (25%), Positives = 126/280 (45%), Gaps = 16/280 (5%)

Query: 596 VDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPD-----CIEDIIALVSLY 650
             +  +P+DD ET          GIFQ E    R  ++ +            +  + +L 
Sbjct: 6   QTMYDLPYDDEETLKEFAKDNLTGIFQFEGRATRSIMKKIYSGTDNVPDFMTLADVNALS 65

Query: 651 RPGPIDNIVVYNNRKNGK-EKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
           RPG + + +        + ++   IHP++D +L ET   ++YQEQVMQI     G S  E
Sbjct: 66  RPGSLISGMTAEYIDVARGKEPRKIHPVVDEILSETNNCLVYQEQVMQIGSRFGGLSDHE 125

Query: 710 ADVLRRAM-GKKIKEEMDKQKERFISGASKN-GISKTIAVNIFELLAKFADYGFNKSHAA 767
              LR+ +  K+     ++   +F  GA    G  + ++  +++ +A  A Y FN +HA 
Sbjct: 126 IGRLRKIIGAKQAGGAFEEFWIKFRDGARDTVGADEALSREVWDYMAASASYLFNIAHAI 185

Query: 768 AYAVISYQTAWMKTHYPVEFLAASMTLEMDN------VEKIKKFCQDARQFNIQIMPPSV 821
           +YA+++Y   ++K H+P EF AAS+            ++      Q+A    + + PP  
Sbjct: 186 SYALVAYWCMYLKVHHPAEFYAASLKSASKKSKTKGKIDPQLPLLQEAIANGLTVSPPHP 245

Query: 822 NTPCVDFKVGDNR--IYYSLAAIKGVGTTTARHIMEASAD 859
               V ++  ++R  +      I GVG  TA  ++EA   
Sbjct: 246 RLSGVSWEPNEHRTGVVGGFTQIPGVGEKTAEKMLEARNK 285


>gi|313623606|gb|EFR93775.1| DNA polymerase III, alpha subunit [Listeria innocua FSL J1-023]
          Length = 212

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            K    K +  +   + E E+   G Y S HP+  Y+  L+ + I       +   G   +
Sbjct: 5    KPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITR---LASVSSGKIYQ 61

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 62   VAAYVHEVKSIRTKKGETMCFLTISDESKELSAVMFP 98


>gi|313618735|gb|EFR90649.1| DNA polymerase III, alpha subunit [Listeria innocua FSL S4-378]
          Length = 212

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 937  KITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIR 996
            K    K +  +   + E E+   G Y S HP+  Y+  L+ + I       +   G   +
Sbjct: 5    KPRYRKTAPISIDEKLEKEKLYTGQYVSAHPVSYYQNKLQNLAITR---LASVSSGKIYQ 61

Query: 997  LAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 62   VAAYVHEVKSIRTKKGETMCFLTISDESKELSAVMFP 98


>gi|46206142|ref|ZP_00210206.1| COG0587: DNA polymerase III, alpha subunit [Magnetospirillum
          magnetotacticum MS-1]
          Length = 72

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%)

Query: 9  PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          P +  L  HS++S L+GA     +  + A      +A TD   L+  + F + A  
Sbjct: 8  PRYAELHAHSAFSFLDGASHPEELAAEGARLGLSGLAGTDHEGLYGVVRFDEGARK 63


>gi|32481334|gb|AAP84014.1| catalase [Vibrio cholerae]
          Length = 174

 Score = 93.7 bits (231), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 83/157 (52%), Positives = 105/157 (66%), Gaps = 3/157 (1%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +            E+ L  K+  GLE RL         +     +Y +RL  EL+VI +
Sbjct: 18  EYFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQ 77

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 78  MGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 137

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
           +R+SMPDFD+DFC D+RD+VI +V   YG + V+QII
Sbjct: 138 ERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQII 174


>gi|165928506|ref|ZP_02224338.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165919458|gb|EDR36814.1| DNA polymerase III subunit alpha [Yersinia pestis biovar Orientalis
           str. F1991016]
          Length = 405

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 97/323 (30%), Positives = 152/323 (47%), Gaps = 65/323 (20%)

Query: 637 PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGK--EKIVSIHPLIDPMLKETQGVIIYQEQ 694
           P   + ++A  +L+RPGPI + ++ +     K      S+HP++D +  ET GVI+YQEQ
Sbjct: 6   PMSFKTVVATTALFRPGPIQSGMLDDYVSVAKGFMAPQSLHPVLDELTAETNGVILYQEQ 65

Query: 695 VMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS----------------- 737
            M   +LL+G++++EAD +R+A+GKK  E+M    E+F+  A                  
Sbjct: 66  TMNATRLLAGFTMAEADGVRKAIGKKDMEKMKSMGEKFVVQAQAGWIDVEMEDGTTQRIH 125

Query: 738 -----------------------------------KNGISKTIAVNIFELLAKFADYGFN 762
                                              + G+S+T A  I++   K   Y FN
Sbjct: 126 RAEHFKCEDGALRTVEEALEAGVKLPMAAVRVTGSQPGLSETKAKEIWDAFEKNGAYQFN 185

Query: 763 KSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVN 822
           KSH  AY++ISYQ+ W+KTHYP EF AA++T  +   +K +   +DA  + I ++PP VN
Sbjct: 186 KSHPVAYSLISYQSMWLKTHYPAEFFAAALT--ILGEDKHQGLVKDALTYGIHVLPPDVN 243

Query: 823 TPCVDFKV----GDNRIYY-SLAAIKGVGTTTARHIMEASA--DKPFDSLEDFCSRVDSK 875
                 ++      +++ Y   +A+KG      + IM A       F+SLE F   V+ +
Sbjct: 244 VSSNRIEIRTLEDGSQVLYAPFSAVKGCSENGCQAIMRAREKVGGKFESLEQFEEAVEKR 303

Query: 876 --KLNRRVLESLVFAGALDCFGY 896
               N RV ESL   GA      
Sbjct: 304 ACACNSRVRESLQKVGAFASIEP 326


>gi|32481350|gb|AAP84022.1| catalase [Vibrio cholerae]
          Length = 160

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 82/156 (52%), Positives = 104/156 (66%), Gaps = 3/156 (1%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +            E+ L  K+  GLE RL         +     +Y +RL  EL+VI +
Sbjct: 5   EYFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQ 64

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 65  MGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 124

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQI 446
           +R+SMPDFD+DFC D+RD+VI +V   YG + V+QI
Sbjct: 125 ERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQI 160


>gi|156902008|gb|ABU96797.1| DNA polymerase III alpha subunit [Vibrio cholerae]
          Length = 170

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 81/155 (52%), Positives = 103/155 (66%), Gaps = 3/155 (1%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +            E+ L  K+  GLE RL         +     +Y +RL  EL+VI +
Sbjct: 16  EYFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQ 75

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 76  MGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 135

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
           +R+SMPDFD+DFC D+RD+VI +V   YG + V+Q
Sbjct: 136 ERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQ 170


>gi|156901996|gb|ABU96791.1| DNA polymerase III alpha subunit [Vibrio cholerae]
 gi|156901998|gb|ABU96792.1| DNA polymerase III alpha subunit [Vibrio cholerae]
 gi|156902000|gb|ABU96793.1| DNA polymerase III alpha subunit [Vibrio cholerae]
          Length = 168

 Score = 92.9 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 81/155 (52%), Positives = 103/155 (66%), Gaps = 3/155 (1%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +            E+ L  K+  GLE RL         +     +Y +RL  EL+VI +
Sbjct: 14  EYFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQ 73

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 74  MGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 133

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQ 445
           +R+SMPDFD+DFC D+RD+VI +V   YG + V+Q
Sbjct: 134 ERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAVSQ 168


>gi|156902002|gb|ABU96794.1| DNA polymerase III alpha subunit [Vibrio cholerae]
 gi|295848033|gb|ADG44928.1| DNA polymerase III alpha subunit [Vibrio cholerae]
 gi|295848037|gb|ADG44930.1| DNA polymerase III alpha subunit [Vibrio cholerae]
          Length = 179

 Score = 92.9 bits (229), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 93/183 (50%), Positives = 121/183 (66%), Gaps = 8/183 (4%)

Query: 264 FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
           F+D+PEAL N+VEIA+RC+  +++                    E+ L  K+  GLE RL
Sbjct: 2   FADIPEALANSVEIAKRCNVTVRLGEYF-----LPNFPTGGMAIEDFLVMKSREGLEERL 56

Query: 324 A---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                    +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGS
Sbjct: 57  EFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGS 116

Query: 381 GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
           GAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG 
Sbjct: 117 GAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGR 176

Query: 441 ERV 443
           + V
Sbjct: 177 DAV 179


>gi|295848035|gb|ADG44929.1| DNA polymerase III alpha subunit [Vibrio cholerae]
          Length = 178

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 93/183 (50%), Positives = 121/183 (66%), Gaps = 8/183 (4%)

Query: 264 FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
           F+D+PEAL N+VEIA+RC+  +++                    E+ L  K+  GLE RL
Sbjct: 1   FADIPEALANSVEIAKRCNVTVRLGEYF-----LPNFPTGGMAIEDFLVMKSREGLEERL 55

Query: 324 A---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                    +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGS
Sbjct: 56  EFLFPDPDVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGS 115

Query: 381 GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
           GAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG 
Sbjct: 116 GAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGR 175

Query: 441 ERV 443
           + V
Sbjct: 176 DAV 178


>gi|291532878|emb|CBL05991.1| DNA polymerase III, alpha subunit [Megamonas hypermegale ART12/1]
          Length = 62

 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 41  QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
             +IAITD   ++  + F ++A   GI+PIIGC++ +  +          T       ++
Sbjct: 1   MKSIAITDHGTMYGTIAFYKEALKQGIKPIIGCEVYVAPKSRFDNFEVEGTR---YYHLI 57

Query: 101 LLVS 104
           LL  
Sbjct: 58  LLAE 61


>gi|309800242|ref|ZP_07694420.1| DNA polymerase III subunit alpha [Streptococcus infantis SK1302]
 gi|308116134|gb|EFO53632.1| DNA polymerase III subunit alpha [Streptococcus infantis SK1302]
          Length = 100

 Score = 91.8 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 38/72 (52%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            L   + YS +E  +S+   +D+  A    A+ I D +NL+ A  F ++    GIQP++
Sbjct: 3  AQLDTKTVYSFMESMISIQKYVDQGKAYGYSALGIMDIDNLYGAYYFIKECQKQGIQPLL 62

Query: 72 GCQLDIDMQDNL 83
          G ++ +  ++ L
Sbjct: 63 GLEVTVHHKEEL 74


>gi|242065942|ref|XP_002454260.1| hypothetical protein SORBIDRAFT_04g027670 [Sorghum bicolor]
 gi|241934091|gb|EES07236.1| hypothetical protein SORBIDRAFT_04g027670 [Sorghum bicolor]
          Length = 427

 Score = 91.8 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 3/87 (3%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS++S  +G+LS  +++++   +    +A+TD + +    E  + A    I+ I 
Sbjct: 97  VELHAHSAFS--DGSLSPADLVERAHRNGVKVLALTDHDTMAGVPEAVEAAKQYPIRIIP 154

Query: 72  GCQLD-IDMQDNLKMTNQGKTPFPTVP 97
           G ++  +      +M+ +         
Sbjct: 155 GVEISAVHSPSGDEMSAEEPVHILAYY 181


>gi|156902004|gb|ABU96795.1| DNA polymerase III alpha subunit [Vibrio cholerae]
          Length = 166

 Score = 91.4 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 80/153 (52%), Positives = 101/153 (66%), Gaps = 3/153 (1%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +            E+ L  K+  GLE RL         +     +Y +RL  EL+VI +
Sbjct: 14  EYFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQ 73

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 74  MGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 133

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
           +R+SMPDFD+DFC D+RD+VI +V   YG + V
Sbjct: 134 ERVSMPDFDVDFCMDKRDQVIDHVAEMYGRDAV 166


>gi|169344082|ref|ZP_02865068.1| DNA polymerase III subunit alpha [Clostridium perfringens C str.
           JGS1495]
 gi|169297817|gb|EDS79914.1| DNA polymerase III subunit alpha [Clostridium perfringens C str.
           JGS1495]
          Length = 166

 Score = 91.0 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 65/154 (42%), Positives = 100/154 (64%), Gaps = 3/154 (1%)

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           + FC + R  VI YV  KYGH+ V+QIITFG++ A+A +RDVGRA+   Y++VDR+ K I
Sbjct: 11  LYFCYEGRQRVIDYVVEKYGHDNVSQIITFGTMAARACIRDVGRAMNYTYAEVDRIAKQI 70

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPL 539
           P      +  +A+  +   +     +  V  L+++S++LEGL RH+STHAAG+VI  +PL
Sbjct: 71  PTVLGVTID-KALDLNPELKTIYDTEERVRELIDVSRRLEGLPRHSSTHAAGVVIASQPL 129

Query: 540 SQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
            + VP+ ++   +  VTQF+M  +E+ GL+K D 
Sbjct: 130 VEYVPLQKN--DESIVTQFDMTTLEELGLLKMDV 161


>gi|119632807|gb|ABL84408.1| DNA polymerase III alpha subunit [Streptococcus suis]
          Length = 236

 Score = 91.0 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 79/237 (33%), Positives = 125/237 (52%), Gaps = 6/237 (2%)

Query: 436 NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
           ++YG    AQI+T+ +  AK A+RDV +    P  ++  + K I    +      A   +
Sbjct: 1   DRYGSTHAAQIVTYSTFGAKQAIRDVFKRFGTPEYELSNITKKISFRDSLT---SAYQRN 57

Query: 496 SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
           + FR+   +     +   I+Q++EG  R  S HAAGIV+ D  L+  +P+      D+ V
Sbjct: 58  AAFRQIINSKIEYQKAFAIAQQIEGQPRQTSIHAAGIVMSDEELTDTIPLKIG--DDMLV 115

Query: 556 TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVK-VDLSLIPFDDHETYHLLTT 614
           TQ++   +E  GL+K DFLGL+ LT +QK  + + +R  + +D++ I  +D +T  L   
Sbjct: 116 TQYDAHAVEANGLLKMDFLGLRNLTFVQKMAEGVRERYQQEIDIAKIDLEDKKTLELFAA 175

Query: 615 KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
             T GIFQ E  G    L  ++P   EDI+A  SL RPG  D    +  RK+G+E +
Sbjct: 176 GRTKGIFQFEQPGAISLLRRVKPGRFEDIVATTSLNRPGASDYSDNFVKRKHGQETV 232


>gi|156902006|gb|ABU96796.1| DNA polymerase III alpha subunit [Vibrio cholerae]
          Length = 177

 Score = 91.0 bits (224), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 92/181 (50%), Positives = 120/181 (66%), Gaps = 8/181 (4%)

Query: 264 FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
           F+D+PEAL N+VEIA+RC+  +++                    E+ L  K+  GLE RL
Sbjct: 1   FADIPEALANSVEIAKRCNVTVRLGEYF-----LPNFPTGGMAIEDFLVMKSREGLEERL 55

Query: 324 A---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGS 380
                    +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IPVGPGRGS
Sbjct: 56  EFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGS 115

Query: 381 GAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGH 440
           GAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +V   YG 
Sbjct: 116 GAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAEMYGR 175

Query: 441 E 441
           +
Sbjct: 176 D 176


>gi|323934239|gb|EGB30663.1| uracil DNA glycosylase superfamily protein [Escherichia coli E1520]
          Length = 389

 Score = 90.2 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/166 (33%), Positives = 86/166 (51%), Gaps = 9/166 (5%)

Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            NG++   A  I+ +  K   Y FNKSH+ AY++ISYQ+ W+KTHYP EF AA++T+   
Sbjct: 10  SNGLTHERAEEIWNMFEKSGAYAFNKSHSVAYSLISYQSMWLKTHYPAEFFAAALTI--L 67

Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNRIYY-SLAAIKGVGTTTARH 852
             +K +   +DA  + I+++PP VN      ++      +++ Y   +A+KG      + 
Sbjct: 68  GEDKHQGLVKDALTYGIRVLPPDVNVSSNRIEIRTLEDGSQVLYAPFSAVKGCSENGCQA 127

Query: 853 IMEASA--DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
           IM A       F+SL  F   V+ +  N RV ESL   GA      
Sbjct: 128 IMRAREKVGGKFESLAQFEEAVEKRACNSRVRESLQKVGAFASIEP 173


>gi|309797646|ref|ZP_07692033.1| uracil-DNA glycosylase, family 4 [Escherichia coli MS 145-7]
 gi|308118743|gb|EFO56005.1| uracil-DNA glycosylase, family 4 [Escherichia coli MS 145-7]
          Length = 389

 Score = 90.2 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/166 (33%), Positives = 86/166 (51%), Gaps = 9/166 (5%)

Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            NG++   A  I+ +  K   Y FNKSH+ AY++ISYQ+ W+KTHYP EF AA++T+   
Sbjct: 10  SNGLTHERAEEIWNMFEKSGAYAFNKSHSVAYSLISYQSMWLKTHYPAEFFAAALTI--L 67

Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNRIYY-SLAAIKGVGTTTARH 852
             +K +   +DA  + I+++PP VN      ++      +++ Y   +A+KG      + 
Sbjct: 68  GEDKHQGLVKDALTYGIRVLPPDVNVSSNRIEIRTLEDGSQVLYAPFSAVKGCSENGCQA 127

Query: 853 IMEASA--DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
           IM A       F+SL  F   V+ +  N RV ESL   GA      
Sbjct: 128 IMRAREKVGGKFESLAQFEEAVEKRACNSRVRESLQKVGAFASIEP 173


>gi|258615946|ref|ZP_05713716.1| DNA polymerase III PolC [Enterococcus faecium DO]
          Length = 663

 Score = 90.2 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L VHS+ S ++   S+++++ +       AIAITD     +  E       AG++ + 
Sbjct: 341 VELHVHSNMSTMDATNSISDLVAQAGKWGHRAIAITDHGGAQAFPEAHSAGKKAGVKILY 400

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++         N           +V 
Sbjct: 401 GVEANVVDDGVPIAYNDAHEALSEATYVVF 430



 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 78  DMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQ 137
             Q N  +             + +L     G + L +L+S    ++  ++  RI  S L+
Sbjct: 599 HDQLNEHIGEGDSYKRARPFHVTILAKNQAGLKDLFKLISMSN-VEYFERVPRIPRSQLK 657

Query: 138 EIGTEGL 144
           ++  E L
Sbjct: 658 KM-RENL 663


>gi|309808826|ref|ZP_07702711.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 01V1-a]
 gi|308167952|gb|EFO70085.1| putative DNA polymerase III, alpha subunit, Gram-positive type
           [Lactobacillus iners LactinV 01V1-a]
          Length = 493

 Score = 90.2 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 88/540 (16%), Positives = 170/540 (31%), Gaps = 121/540 (22%)

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
                 +PD D++F  D +     Y++  +G +   +  T G++  K A   V       
Sbjct: 12  GFHGDKVPDIDLNFSGDYQPVAHSYIRVMFGPDNSYRAGTIGTVADKIAYGYV------- 64

Query: 469 YSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTH 528
                                +   D++  +           L  +SQ   G+ R    H
Sbjct: 65  ---------------------KHYEDENELKLRNAE------LDRLSQGASGVKRTTGQH 97

Query: 529 AAGIV--IGDRPLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQ 583
            AGIV    D  +    P+             T F+   I    ++KFD LG    T+++
Sbjct: 98  PAGIVVVPNDMDIYDFTPVQYPADDLDAAWLTTHFDFHSIHD-NILKFDILGHDDPTMIR 156

Query: 584 KSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKG--------------TLGIFQLESSGMR 629
                + Q    VD   IP  D     L +                 TLG+ +  +  +R
Sbjct: 157 -----MLQDLSGVDPLTIPPCDPGVMSLFSGTDILGVTPEQIGVNTGTLGVPEFGTKFVR 211

Query: 630 QALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVI 689
             LE  +P    +++ +  L                N ++ I      +  ++     ++
Sbjct: 212 GMLEETKPTTFSELLQISGLSHG-------TDVWLGNAEDLINKGICKLKNVIGCRDNIM 264

Query: 690 IYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI 749
                      +        A     ++        +         +    I      + 
Sbjct: 265 T--------DLIHWDVPPEVAFSTMESVRHGKGISDEN----MAILSKNKNIPDWYIQSC 312

Query: 750 FELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK----- 804
            ++      Y F K+HA AY +++ + AW K +YPV +  + +++  D  + +       
Sbjct: 313 LKI-----KYMFPKAHATAYILMALRIAWFKVYYPVIYYTSYLSVRADLFDIVAMSHGKN 367

Query: 805 ----------------------------FCQDARQFNIQIMPPSVNTPCV-DFKV-GDNR 834
                                          +  +  I I    +      +FK+  ++ 
Sbjct: 368 TVKAAMKKIRDQGNNASTKDKTLLTVLEIANECLERGININMVDIEKSDALNFKILDEHN 427

Query: 835 IYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
           I      + G+G   A+ I+ A  ++PF S ED   R    K+++ ++E     G LD  
Sbjct: 428 ILAPFNTVPGLGDNVAKQIVAARDEQPFLSKEDLSIR---GKVSQTIMEYFENNGVLDGL 484


>gi|239992083|ref|ZP_04712747.1| DNA polymerase III subunit alpha [Streptomyces roseosporus NRRL
          11379]
          Length = 59

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          + K P F HL VH+ YSLL+GA    ++ +         IA+TD  NL  A +F   A  
Sbjct: 1  MTKPP-FTHLHVHTQYSLLDGAARFTDMFESANKMGMTHIAMTDHGNLHGAYDFFHSAKK 59


>gi|121592122|ref|ZP_01679085.1| DNA polymerase III alpha subunit [Vibrio cholerae 2740-80]
 gi|121546174|gb|EAX56515.1| DNA polymerase III alpha subunit [Vibrio cholerae 2740-80]
          Length = 182

 Score = 89.8 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 93/186 (50%), Positives = 123/186 (66%), Gaps = 8/186 (4%)

Query: 257 RSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAV 316
            +EM  +F+D+PEAL N+VEIA+RC+  +++                    E+ L  K+ 
Sbjct: 2   EAEMCELFADIPEALANSVEIAKRCNVTVRLGEYF-----LPNFPTGGMAIEDFLVMKSR 56

Query: 317 AGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIP 373
            GLE RL         +     +Y +RL  EL+VI +M F GYFLIV +FIQW+K N+IP
Sbjct: 57  EGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIP 116

Query: 374 VGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRY 433
           VGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP+R+SMPDFD+DFC D+RD+VI +
Sbjct: 117 VGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDH 176

Query: 434 VQNKYG 439
           V N + 
Sbjct: 177 VANVWS 182


>gi|291536050|emb|CBL09162.1| DNA polymerase III, alpha subunit (gram-positive type) [Roseburia
           intestinalis M50/1]
 gi|291538543|emb|CBL11654.1| DNA polymerase III, alpha subunit (gram-positive type) [Roseburia
           intestinalis XB6B4]
          Length = 609

 Score = 89.5 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 107/629 (17%), Positives = 202/629 (32%), Gaps = 133/629 (21%)

Query: 331 GYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYAL 390
                  ++RLD ELN I    ++  ++I    +  + ++   VG  RGS   S  A   
Sbjct: 4   EELPAIVKERLDRELNSIISNGYAVMYIIAQKLVWKSNEDGYLVG-SRGSVGSSFAATMS 62

Query: 391 TITDIDPLR---------------------------------------------FSLLFE 405
            IT+++PL+                                             F + FE
Sbjct: 63  GITEVNPLQAHYRCPNCKYSDFDSPEVKAFSGRSGCDMPDKICPVCGEKLVKDGFDIPFE 122

Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
            FL       PD D++F  + + +   Y +  +G+ +  +  T G+L  K A   +    
Sbjct: 123 TFLGFKGNKEPDIDLNFSGEYQSKAHAYCEVIFGYGQTFRAGTIGTLADKTAFGYIKNYY 182

Query: 466 QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHA 525
           +                                   R        +  I Q   G+ R  
Sbjct: 183 E----------------------------------ERGIHKRNCEIDRIVQGCVGVRRTT 208

Query: 526 STHAAGIV--IGDRPLSQLVPMYRDVRSDLP--VTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             H  GIV       ++   P+           VT           L+K D LG    T+
Sbjct: 209 GQHPGGIVVLPVGEEINTFTPVQHPANDMTTATVTTHFDYHSIDHNLLKLDILGHDDPTM 268

Query: 582 LQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIE 641
           ++     + Q    +D   IP DD     L      LG+   +  G+     G+     E
Sbjct: 269 IR-----MLQDLTGIDPVTIPLDDEAVMSLFKNTSALGVTPEDIGGIPLGCLGIPEFGTE 323

Query: 642 DIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQL 701
             + +V   +P    +++  +   +G +  +     +      T    I     + I  +
Sbjct: 324 FAMQMVIDAKPQEFSDLIRISGLSHGTDVWLGNAQTLIEQGLATISTAICTRDDIMIYLI 383

Query: 702 LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGF 761
             G    ++  +  ++ K    + +     +      + + +    +  ++      Y F
Sbjct: 384 QMGLDSEQSFTIMESVRKGKGLKEE-----WKEEMRAHDVPEWYIDSCLKI-----KYMF 433

Query: 762 NKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNV---------------------- 799
            K+HAAAY +++++ A+ K +YP+ + AA  ++                           
Sbjct: 434 PKAHAAAYVMMAWRIAYCKVYYPLAYYAAYFSIRATGFNYEIMCQGRERLTYFQKDYERR 493

Query: 800 -----------EKIKKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGT 847
                       +  K  Q+         P  +     D F++ D ++  +L  I G+G 
Sbjct: 494 KDSLSKKEQDVYRDMKIVQEMYARGFDFTPIDIYRAKPDRFQIIDGKLMPALNTIDGMGD 553

Query: 848 TTARHIMEASADKPFDSLEDFCSRVDSKK 876
             A  + EA+ D  F S +DF  R  + K
Sbjct: 554 NAAIAVAEAAKDGKFLSRDDFRQRTKATK 582


>gi|149010468|ref|ZP_01831839.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP19-BS75]
 gi|147764949|gb|EDK71878.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP19-BS75]
          Length = 75

 Score = 88.7 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 33/70 (47%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3  AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72 GCQLDIDMQD 81
          G ++ + + D
Sbjct: 63 GLEMTVFVDD 72


>gi|257487763|ref|ZP_05641804.1| error-prone DNA polymerase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 207

 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 66/204 (32%), Positives = 112/204 (54%), Gaps = 4/204 (1%)

Query: 497 RFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT 556
           R        P + R+L ++ +L G  RH S H  G VI + PL  LVP+     +D  + 
Sbjct: 4   REYGFDADMPILKRVLALTGELIGFPRHLSQHPGGFVISEHPLETLVPVENAAMADRTII 63

Query: 557 QFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTK 615
           Q++   ++  GL+K D L L  L+ L+++ D +   RG +  L+ +P DD +TY +++  
Sbjct: 64  QWDKDDLDLVGLLKVDILALGMLSALRRTFDLVHLHRGKRWTLADLPGDDRKTYEMISRA 123

Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYN--NRKNGKEKIVS 673
            T+G+FQ+ES      L  ++P+   D++  V++ RPGPI   +V+    R+N +E I  
Sbjct: 124 DTIGVFQIESRAQMAMLPRLRPEKFYDLVIEVAIVRPGPIQGDMVHPYLRRRNKEEAITY 183

Query: 674 IHPLIDPMLKETQGVIIYQEQVMQ 697
             P +  + + T GV ++QEQVM+
Sbjct: 184 P-PKLKSVFERTLGVPLFQEQVME 206


>gi|213420366|ref|ZP_03353432.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 192

 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 84/173 (48%), Positives = 117/173 (67%), Gaps = 7/173 (4%)

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           ++ IP DD +++ +L    T  +FQLES GM+  ++ +QPDC ED+IALV+L+RPGP+ +
Sbjct: 20  IAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQS 79

Query: 658 IVV-------YNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEA 710
            +V       +   +     +   H  + P+L+ T G+I+YQEQVMQIAQ+LSGY+L  A
Sbjct: 80  GMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGA 139

Query: 711 DVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNK 763
           D+LRRAMGKK  EEM KQ+  F  GA KNGI   +A+ IF+L+ KFA YGFNK
Sbjct: 140 DMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNK 192


>gi|220932020|ref|YP_002508928.1| PHP domain protein [Halothermothrix orenii H 168]
 gi|219993330|gb|ACL69933.1| PHP domain protein [Halothermothrix orenii H 168]
          Length = 270

 Score = 86.4 bits (212), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 81/212 (38%), Gaps = 40/212 (18%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H++ S  +G+LS   ++ K       AIAITD + +   +   Q A  + ++ I G 
Sbjct: 5   LHIHTNAS--DGSLSPGEVVKKAIDLGYKAIAITDHDTVAGIIPALQVARKSSLEVIPGI 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS----- 128
           +++ D++D  ++   G     T P +            L EL S   + ++  +      
Sbjct: 63  EINTDIEDR-ELHILGYFIDYTKPDL------------LKELSSLKKMREKRARKMVQKL 109

Query: 129 ----VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
               + I    +  I  +G I         I +A              ++K++F    Y+
Sbjct: 110 RNMGINIEWEEVINIAGQGTIG-----RSHICQAIINKGY------ADSWKEVFEK--YI 156

Query: 185 NLQRHRGYDRYRESQV--VQLAYTH-ELPLVA 213
                    R + + +  ++L      +P++A
Sbjct: 157 GKNSPAYVPRKKLTPLKAIKLIKECSGIPVIA 188


>gi|218462587|ref|ZP_03502678.1| DNA polymerase III alpha subunit protein [Rhizobium etli Kim 5]
          Length = 170

 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +  LRK GI    + +    G  + +A +V+ +Q+  + KG  + ++T  +      A  
Sbjct: 1    REELRKAGITRNVDLLTVPNGKRVTIAGLVLVRQRPGSAKG--VIFMTLEDETGVANAIV 58

Query: 1032 F 1032
            +
Sbjct: 59   W 59


>gi|77412699|ref|ZP_00788952.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae CJB111]
 gi|77161250|gb|EAO72308.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae CJB111]
          Length = 240

 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 39/90 (43%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V    H++ S ++   ++ +++D  A    PAIAITD  N+ S      +A  AGI+ I 
Sbjct: 44  VEFHAHTNMSTMDALPTVESLIDTAAKWGHPAIAITDHANVQSFPHGYHRAKKAGIKAIF 103

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + +I         N+          +V 
Sbjct: 104 GLEANIVEDKVPISYNEVDMNLHEATYVVF 133


>gi|37695664|gb|AAR00363.1| DnaE [Vibrio parahaemolyticus]
          Length = 149

 Score = 85.6 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 77/143 (53%), Positives = 94/143 (65%), Gaps = 3/143 (2%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +          EE   L  K+  GLE RL         +     +Y +RL  EL VI +
Sbjct: 7   EYFLPAFPTEGMEETEFLVMKSREGLEERLEFLFPDEEERKKRRPEYDERLQIELYVINQ 66

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 67  MGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 126

Query: 411 DRMSMPDFDIDFCQDRRDEVIRY 433
           +R+SMPDFD+DFC D+RD+VI +
Sbjct: 127 ERVSMPDFDVDFCMDKRDQVIDH 149


>gi|37695672|gb|AAR00367.1| DnaE [Vibrio parahaemolyticus]
          Length = 149

 Score = 85.6 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 77/143 (53%), Positives = 95/143 (66%), Gaps = 3/143 (2%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +          EE   L  K+  GLE RL         +     +Y +RL  EL+VI +
Sbjct: 7   EYFLPAFPTEGIEETEFLVMKSREGLEERLEFLFPDEEERKKRRPEYDERLQIELDVINQ 66

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 67  MGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 126

Query: 411 DRMSMPDFDIDFCQDRRDEVIRY 433
           +R+SMPDFD+DFC D+RD+VI +
Sbjct: 127 ERVSMPDFDVDFCMDKRDQVIDH 149


>gi|32481338|gb|AAP84016.1| catalase [Vibrio cholerae]
          Length = 162

 Score = 85.6 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 76/147 (51%), Positives = 97/147 (65%), Gaps = 3/147 (2%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +            E+ L  K+  GLE RL         +     +Y +RL  EL+VI +
Sbjct: 16  EYFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQ 75

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DP+ + LLFERFLNP
Sbjct: 76  MGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPVEYDLLFERFLNP 135

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNK 437
           +R+SMPDFD+DFC D+RD+VI +V   
Sbjct: 136 ERVSMPDFDVDFCMDKRDQVIDHVAEM 162


>gi|37695668|gb|AAR00365.1| DnaE [Vibrio parahaemolyticus]
          Length = 149

 Score = 85.6 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 77/143 (53%), Positives = 94/143 (65%), Gaps = 3/143 (2%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +          EE   L  K+  GLE RL         +     +Y +RL  EL VI +
Sbjct: 7   EYFLPAFPTEGMEETEFLVMKSREGLEERLEFLFPNEEERKKRRPEYDERLQIELYVINQ 66

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 67  MGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 126

Query: 411 DRMSMPDFDIDFCQDRRDEVIRY 433
           +R+SMPDFD+DFC D+RD+VI +
Sbjct: 127 ERVSMPDFDVDFCMDKRDQVIDH 149


>gi|37695662|gb|AAR00362.1| DnaE [Vibrio parahaemolyticus]
 gi|37695670|gb|AAR00366.1| DnaE [Vibrio parahaemolyticus]
 gi|37695686|gb|AAR00374.1| DnaE [Vibrio parahaemolyticus]
 gi|145952254|gb|ABP98950.1| DnaE [Vibrio parahaemolyticus]
 gi|145952256|gb|ABP98951.1| DnaE [Vibrio parahaemolyticus]
 gi|145952258|gb|ABP98952.1| DnaE [Vibrio parahaemolyticus]
 gi|145952260|gb|ABP98953.1| DnaE [Vibrio parahaemolyticus]
 gi|145952262|gb|ABP98954.1| DnaE [Vibrio parahaemolyticus]
 gi|145952264|gb|ABP98955.1| DnaE [Vibrio parahaemolyticus]
 gi|145952268|gb|ABP98957.1| DnaE [Vibrio parahaemolyticus]
          Length = 149

 Score = 85.6 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 77/143 (53%), Positives = 95/143 (66%), Gaps = 3/143 (2%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +          EE   L  K+  GLE RL         +     +Y +RL  EL+VI +
Sbjct: 7   EYFLPAFPTEGMEETEFLVMKSREGLEERLEFLFPDEEERKKRRPEYDERLQIELDVINQ 66

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 67  MGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 126

Query: 411 DRMSMPDFDIDFCQDRRDEVIRY 433
           +R+SMPDFD+DFC D+RD+VI +
Sbjct: 127 ERVSMPDFDVDFCMDKRDQVIDH 149


>gi|86741555|ref|YP_481955.1| phosphoesterase PHP-like protein [Frankia sp. CcI3]
 gi|86568417|gb|ABD12226.1| Phosphoesterase PHP-like [Frankia sp. CcI3]
          Length = 59

 Score = 85.6 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 32 ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGK 90
          +L ++   Q PA+AITD   ++ A +F ++A AAG++PIIGC+  +  +         +
Sbjct: 1  MLKEVFRQQMPAVAITDHGYMYGAYDFHKQATAAGVKPIIGCEAYVAPESRPLKQRVRR 59


>gi|32481346|gb|AAP84020.1| catalase [Vibrio cholerae]
          Length = 156

 Score = 85.2 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 77/147 (52%), Positives = 97/147 (65%), Gaps = 3/147 (2%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +            E+ L  K+  GLE RL         +     +Y +RL  EL+VI +
Sbjct: 10  EYFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQ 69

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 70  MGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 129

Query: 411 DRMSMPDFDIDFCQDRRDEVIRYVQNK 437
           +R+SMPDFD+DFC D+RD+VI +V   
Sbjct: 130 ERVSMPDFDVDFCMDKRDQVIDHVAEM 156


>gi|37695666|gb|AAR00364.1| DnaE [Vibrio parahaemolyticus]
 gi|37695674|gb|AAR00368.1| DnaE [Vibrio parahaemolyticus]
 gi|37695676|gb|AAR00369.1| DnaE [Vibrio parahaemolyticus]
 gi|37695678|gb|AAR00370.1| DnaE [Vibrio parahaemolyticus]
 gi|37695680|gb|AAR00371.1| DnaE [Vibrio parahaemolyticus]
 gi|37695682|gb|AAR00372.1| DnaE [Vibrio parahaemolyticus]
 gi|37695684|gb|AAR00373.1| DnaE [Vibrio parahaemolyticus]
 gi|145952266|gb|ABP98956.1| DnaE [Vibrio parahaemolyticus]
          Length = 149

 Score = 85.2 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 77/143 (53%), Positives = 95/143 (66%), Gaps = 3/143 (2%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +          EE   L  K+  GLE RL         +     +Y +RL  EL+VI +
Sbjct: 7   EYFLPAFPTEGMEETEFLVMKSREGLEERLEFLFPNEEERKKRRPEYDERLQIELDVINQ 66

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 67  MGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 126

Query: 411 DRMSMPDFDIDFCQDRRDEVIRY 433
           +R+SMPDFD+DFC D+RD+VI +
Sbjct: 127 ERVSMPDFDVDFCMDKRDQVIDH 149


>gi|330955450|gb|EGH55710.1| hypothetical protein PSYCIT7_29776 [Pseudomonas syringae Cit 7]
          Length = 248

 Score = 85.2 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL 56
          +     +  L   S++S   GA S   + ++       A+AITD   L   +
Sbjct: 1  MTSE--YAELHCLSNFSFQRGASSARELFERALRHGYQALAITDECTLAGIV 50


>gi|330955875|gb|EGH56135.1| error-prone DNA polymerase [Pseudomonas syringae Cit 7]
          Length = 56

 Score = 85.2 bits (209), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 2/58 (3%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
          +     +  L   S++S   GA S   + ++       A+AITD   L   +     A
Sbjct: 1  MTSE--YAELHCLSNFSFQRGASSARELFERALRHGYQALAITDECTLAGIVRAWPAA 56


>gi|167470312|ref|ZP_02335016.1| DNA polymerase III [Yersinia pestis FV-1]
          Length = 290

 Score = 84.8 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 58/168 (34%), Positives = 87/168 (51%), Gaps = 11/168 (6%)

Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
           + G+S+T A  I++   K   Y FNKSH  AY++ISYQ+ W+KTHYP EF AA++T  + 
Sbjct: 46  QPGLSETKAKEIWDAFEKNGAYQFNKSHPVAYSLISYQSMWLKTHYPAEFFAAALT--IL 103

Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKV----GDNRIYY-SLAAIKGVGTTTARH 852
             +K +   +DA  + I ++PP VN      ++      +++ Y   +A+KG      + 
Sbjct: 104 GEDKHQGLVKDALTYGIHVLPPDVNVSSNRIEIRTLEDGSQVLYAPFSAVKGCSENGCQA 163

Query: 853 IMEASA--DKPFDSLEDFCSRVDSK--KLNRRVLESLVFAGALDCFGY 896
           IM A       F+SLE F   V+ +    N RV ESL   GA      
Sbjct: 164 IMRAREKVGGKFESLEQFEEAVEKRACACNSRVRESLQKVGAFASIEP 211


>gi|326497631|dbj|BAK05905.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 426

 Score = 84.5 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 62/181 (34%), Gaps = 37/181 (20%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  HS++S  +G LS + ++++   +    +A+TD + +    E    A   GI+ I G
Sbjct: 70  ELHSHSNHS--DGFLSPSALVERAHRNGVKVLALTDHDTMAGIPEAMSSAHKCGIRIIPG 127

Query: 73  CQLDIDMQDNLKMTNQ------------GKTPFPTVPSIVLLVST-AEG-YQR----LIE 114
            ++                         G + F  + S++L      +G YQR    L +
Sbjct: 128 VEISALHSPREIPGAGEPVHILAYYGMCGPSRFDELDSMLL---NIRDGRYQRAKNMLAK 184

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF-FNSSQVAEKRLLT 173
           L S           V I    + +I  EG+          I RA           +    
Sbjct: 185 LNSL---------KVPIKWEHVTKIAGEGV----APGRLHIARALVEAGHVDNVRQAFNK 231

Query: 174 F 174
           +
Sbjct: 232 Y 232


>gi|37695660|gb|AAR00361.1| DnaE [Vibrio parahaemolyticus]
          Length = 149

 Score = 84.5 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 76/143 (53%), Positives = 95/143 (66%), Gaps = 3/143 (2%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +          +E   L  K+  GLE RL         +     +Y +RL  EL+VI +
Sbjct: 7   EYFLPAFPTEGMKETEFLVMKSREGLEERLEFLFPDEEERKKRRPEYDERLQIELDVINQ 66

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 67  MGFPGYFLIVMEFIQWSKDNAIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 126

Query: 411 DRMSMPDFDIDFCQDRRDEVIRY 433
           +R+SMPDFD+DFC D+RD+VI +
Sbjct: 127 ERVSMPDFDVDFCMDKRDQVIDH 149


>gi|320096511|ref|ZP_08027909.1| DNA-directed DNA polymerase III alpha subunit [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319976701|gb|EFW08501.1| DNA-directed DNA polymerase III alpha subunit [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 194

 Score = 84.5 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 62/176 (35%), Positives = 86/176 (48%), Gaps = 6/176 (3%)

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
                 ++ L   A  G   R      + G       + +D EL VIA + F+GYFLIV 
Sbjct: 25  PGGHTPDSWLARLAHEGARERYGDRGESPGA-----WRTIDHELEVIASLGFAGYFLIVK 79

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDID 421
           + + +     I    GRGS A S   Y L IT +D +R  LLFERFL+  R   PD DID
Sbjct: 80  EIVDFCSARGIL-CQGRGSAANSAVCYCLGITAVDAVRHQLLFERFLSSARSGPPDIDID 138

Query: 422 FCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCK 477
               RR+EVI++V + YG  R AQ+    + + ++A+RD  RAL     Q     +
Sbjct: 139 IESGRREEVIQHVYDAYGRHRAAQVANVITYRPRSAIRDAARALGHSQGQAAAWSR 194


>gi|255578839|ref|XP_002530274.1| hypothetical protein RCOM_0265760 [Ricinus communis]
 gi|223530206|gb|EEF32114.1| hypothetical protein RCOM_0265760 [Ricinus communis]
          Length = 302

 Score = 84.5 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  HS +S  +G LS + ++++   +    +A+TD + +    E  + A   GI+ I G
Sbjct: 100 ELHSHSKFS--DGFLSPSKLVERAHGNGVKVLALTDHDTMAGIPEAIEAARRFGIKIIPG 157

Query: 73  CQL-DIDMQDNLKMTNQGKTPFPTVPS 98
            ++  I    +L           +   
Sbjct: 158 VEISTIYSPSDLADVYGLLKLGGSDYH 184


>gi|224059026|ref|XP_002299681.1| predicted protein [Populus trichocarpa]
 gi|222846939|gb|EEE84486.1| predicted protein [Populus trichocarpa]
          Length = 408

 Score = 84.5 bits (207), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  HS +S  +G LS + ++++   +    +A+TD + +    E ++ A   GI+ I G
Sbjct: 46  ELHTHSKFS--DGFLSPSKLVERAHGNGVKVLALTDHDTMSGIPEATEAARRFGIKIIPG 103

Query: 73  CQLD 76
            ++ 
Sbjct: 104 VEIS 107


>gi|169836105|ref|ZP_02869293.1| DNA polymerase III, alpha subunit [candidate division TM7
           single-cell isolate TM7a]
          Length = 107

 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 68/103 (66%), Positives = 81/103 (78%)

Query: 372 IPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVI 431
              GPGRGS AGS+ AYAL ITD+DPL++ LLFERFLNPDR+SMPD DID    RR+EVI
Sbjct: 4   HHFGPGRGSAAGSIIAYALNITDLDPLKYDLLFERFLNPDRVSMPDIDIDIQDTRRNEVI 63

Query: 432 RYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
            Y  NKYGHERVA I TFG++ A+A++RDV R LQ+PY + DR
Sbjct: 64  EYCANKYGHERVANICTFGTMAARASVRDVARVLQVPYGESDR 106


>gi|291542227|emb|CBL15337.1| Predicted metal-dependent phosphoesterases (PHP family)
           [Ruminococcus bromii L2-63]
          Length = 283

 Score = 82.9 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 34/113 (30%), Gaps = 19/113 (16%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS++S  +G  S   I+ K       A+A+ D N +    EF       G+  + G 
Sbjct: 5   LHTHSTFS--DGTFSPTEIVLKAKEIGLDAVALCDHNTVAGLDEFVSAGKKYGVTTVSGI 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV---------------LLVST--AEGY 109
           +   +                    I                LLV     +GY
Sbjct: 63  EFSTEYNSKQLHIVGLFIKKENYSDITEIMAESQKLKEESNKLLVKNLAKDGY 115


>gi|297569042|ref|YP_003690386.1| PHP domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296924957|gb|ADH85767.1| PHP domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 301

 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS++S  +GAL+ + ++D        A+A+TD + +    +F   A    IQ I G 
Sbjct: 6  LHTHSTFS--DGALTPSELVDLALQRGLQALALTDHDTVAGLPDFLAAATDKPIQLIGGI 63

Query: 74 QLD 76
          ++ 
Sbjct: 64 EIS 66


>gi|242036639|ref|XP_002465714.1| hypothetical protein SORBIDRAFT_01g044400 [Sorghum bicolor]
 gi|241919568|gb|EER92712.1| hypothetical protein SORBIDRAFT_01g044400 [Sorghum bicolor]
          Length = 418

 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 55/189 (29%), Gaps = 42/189 (22%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  HS++S  +G LS + ++++   +    +A+TD + +    E    A   GI+ I G
Sbjct: 64  ELHSHSNHS--DGFLSPSALVERAHRNGVKVLALTDHDTMAGIPEAVSAASKFGIRIIPG 121

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIV-----------LL---------VSTAEGYQRL 112
            ++                       +            LL                  L
Sbjct: 122 VEISALYNPREVAGAGETVHILAYYGMCGPSRPDELDSMLLNIRDGRYLRAKNM-----L 176

Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
            +L +           V I    + +I  +G+          I RA         E    
Sbjct: 177 QKLTTL---------KVPIKWEHVTKIAGDGV----APGRLHIARAMVEAGY--VENIRQ 221

Query: 173 TFKKLFGDR 181
            F K  GD 
Sbjct: 222 AFNKYLGDD 230


>gi|255030410|ref|ZP_05302361.1| DNA polymerase III PolC [Listeria monocytogenes LO28]
          Length = 459

 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 258 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 317

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G + ++         N          
Sbjct: 318 GIEANLIDDGVPIAYNDQHIALEDAT 343


>gi|34762809|ref|ZP_00143795.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887511|gb|EAA24595.1| DNA polymerase III alpha subunit [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 214

 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 80/215 (37%), Gaps = 40/215 (18%)

Query: 715 RAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY 774
             + K   ++  +  E++ +   +  +      +   +     +Y F K HA AY +++ 
Sbjct: 2   EFVRKGKPKKEPENWEKYSAMMKEKNVPDWYIESCRRI-----EYMFPKGHAVAYVMMAM 56

Query: 775 QTAWMKTHYPVEFLAASMTLEMDNVEK-------------------------------IK 803
           + A+ K H P+ F AA ++ + D+ +                                I 
Sbjct: 57  RIAYFKVHQPLAFYAAFLSRKADDFDMEVMSRGILAKQKLEELSKKPKLDPKKKNEQAIC 116

Query: 804 KFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
           +   +     ++++P  +       F +  N+I   L  I G+G      I++   +  F
Sbjct: 117 EIVVEMEARGLELLPVDIYLSDGKKFTIEYNKIRIPLIGINGLGGAVIDAIVKEREEGKF 176

Query: 863 DSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
            S+ED   R    K+ + V++ L   GA+     +
Sbjct: 177 ISVEDLKRRT---KIQQPVVDKLKNIGAISSLSET 208


>gi|239502679|ref|ZP_04661989.1| putative DNA polymerase III alpha chain [Acinetobacter baumannii
           AB900]
          Length = 421

 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 99/223 (44%), Gaps = 44/223 (19%)

Query: 738 KNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMD 797
            +G+ +++A  I+E     A+Y FNKSH+  Y++IS   A+++ HYP E+ AAS+++   
Sbjct: 10  NDGLEESVAERIWEQTEANANYQFNKSHSVEYSIISMWCAYIRVHYPAEYFAASLSVVDT 69

Query: 798 NVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYYSLAAIKGVGTTTARHIMEA 856
             +K+    +DAR+  I+I+PP +N     +K+  N  I     A+KG+  T A+ I++ 
Sbjct: 70  -EDKLTGLVKDARECGIEILPPDINYSADRYKIKSNTEILAPFNAVKGISETIAKAIVKL 128

Query: 857 SAD----------------------KP---------FDSLEDFCSRV--DSKKLNRRVLE 883
                                     P         FDS ++F       + K+N+ ++E
Sbjct: 129 REKNRAWKVVRYKKSRKTGETTPVYGPDGSVPPKKRFDSFDEFEKAASQPNSKVNKTIVE 188

Query: 884 SLVFAGALDCFGYS---------RMQLLQSLDNIQKYAQWVEK 917
           +L   GA      S         R   ++ L  +   +   ++
Sbjct: 189 NLRAIGAFASIEPSEPSAKDLSRRKDQMRLLPGLIIDSVKADR 231


>gi|115451271|ref|NP_001049236.1| Os03g0192000 [Oryza sativa Japonica Group]
 gi|108706612|gb|ABF94407.1| PHP domain C-terminal region family protein, expressed [Oryza
           sativa Japonica Group]
 gi|113547707|dbj|BAF11150.1| Os03g0192000 [Oryza sativa Japonica Group]
 gi|222624344|gb|EEE58476.1| hypothetical protein OsJ_09734 [Oryza sativa Japonica Group]
          Length = 429

 Score = 82.1 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 60/191 (31%), Gaps = 46/191 (24%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  HS++S  +G LS + ++++   +    +A+TD + +    E    A   G++ I G
Sbjct: 73  ELHSHSNHS--DGFLSPSELVERAHRNGVKVLALTDHDTMAGIPEAVSAAHRFGMRIIPG 130

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI---------ELVSRMYLLD 123
            ++              K    T   + +L      Y  +           ++S   + D
Sbjct: 131 VEIS--------ALYSPKEIAGTGEHVHILA-----YYGMCGPSRFDDLERMLS--NIRD 175

Query: 124 QGKQSVR------------ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF-NSSQVAEKR 170
                 R            I    + +I  EG+          I RA       +   + 
Sbjct: 176 GRYLRARNMLAKLDRLKVPIKWEHVTKIAGEGV----APGRLHIARAMVEMGHIENIRQA 231

Query: 171 LLTFKKLFGDR 181
              +    GD 
Sbjct: 232 FNKYI---GDD 239


>gi|218192239|gb|EEC74666.1| hypothetical protein OsI_10344 [Oryza sativa Indica Group]
          Length = 429

 Score = 82.1 bits (201), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 60/191 (31%), Gaps = 46/191 (24%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  HS++S  +G LS + ++++   +    +A+TD + +    E    A   G++ I G
Sbjct: 73  ELHSHSNHS--DGFLSPSELVERAHRNGVKVLALTDHDTMAGIPEAVSAAHRFGMRIIPG 130

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI---------ELVSRMYLLD 123
            ++              K    T   + +L      Y  +           ++S   + D
Sbjct: 131 VEIS--------ALYSPKEIAGTGEHVHILA-----YYGMCGPSRFDDLERMLS--NIRD 175

Query: 124 QGKQSVR------------ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF-NSSQVAEKR 170
                 R            I    + +I  EG+          I RA       +   + 
Sbjct: 176 GRYLRARNMLAKLDRLKVPIKWEHVTKIAGEGV----APGRLHIARAMVEMGHIENIRQA 231

Query: 171 LLTFKKLFGDR 181
              +    GD 
Sbjct: 232 FNKYI---GDD 239


>gi|303262213|ref|ZP_07348157.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP14-BS292]
 gi|302636536|gb|EFL67027.1| DNA polymerase III DnaE [Streptococcus pneumoniae SP14-BS292]
          Length = 65

 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +     GI P++
Sbjct: 3  AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKKYGIHPLL 62

Query: 72 G 72
          G
Sbjct: 63 G 63


>gi|167967354|ref|ZP_02549631.1| error-prone DNA polymerase [Mycobacterium tuberculosis H37Ra]
          Length = 133

 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            P    +  L  MG+   E   +   G+ + +A  V  +Q+  T +G  + ++   +    
Sbjct: 18   PTQFLRADLDAMGVLPAERLGSVSDGDRVLIAGAVTHRQRPATAQG--VTFINLEDETGM 75

Query: 1027 YEANFFP 1033
                  P
Sbjct: 76   VNVLCTP 82


>gi|258615947|ref|ZP_05713717.1| DNA polymerase III PolC [Enterococcus faecium DO]
          Length = 340

 Score = 81.8 bits (200), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 84/242 (34%), Gaps = 41/242 (16%)

Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
             +      T   +I     + +  + +G     A  +   + K    ++  +       
Sbjct: 83  EELIRRGDATLAEVIGCRDDIMVYLIHAGLDSGMAFKIMETVRKGQWNKIPDELRETYLS 142

Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
           A K        ++    +     Y F K+HAAAY +++ + A+ K ++P+ +  A  ++ 
Sbjct: 143 AMKENNVPDWYIDSCSKI----KYMFPKAHAAAYVLMALRVAYFKVYFPILYYCAYFSVR 198

Query: 796 MDNVEKIKK---------------------------------FCQDARQFNIQIMPPSVN 822
            D+ + +                                      +  +   +     + 
Sbjct: 199 ADDFDLVSMCKGKDAVKQAMKEITDKGLDASVKEKNQLTVLELANEMLERGFKFGMIDLY 258

Query: 823 TPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                +F +  + +     A+  +GT  A+ I+EA  D PF S ED  +R    K+++ +
Sbjct: 259 KSDAVNFVIEGDTLIAPFRAVPSLGTNVAKQIVEARKDGPFLSKEDLATR---GKVSKTL 315

Query: 882 LE 883
           +E
Sbjct: 316 IE 317


>gi|255522073|ref|ZP_05389310.1| DNA polymerase III PolC [Listeria monocytogenes FSL J1-175]
          Length = 444

 Score = 81.0 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 342 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 401

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G + ++         N          
Sbjct: 402 GIEANLIDDGVPIAYNDQHIALEDAT 427


>gi|258517160|ref|YP_003193382.1| PHP domain-containing protein [Desulfotomaculum acetoxidans DSM
           771]
 gi|257780865|gb|ACV64759.1| PHP domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 264

 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 83/254 (32%), Gaps = 55/254 (21%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H++ S  +G  + ++I+ K        IAITD + +    E  +     GI+ I G 
Sbjct: 14  LHIHTTAS--DGVYTPSDIVQKAYGLGLKTIAITDHDTMSGVKEAVEAGKELGIKVIPGV 71

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-----------YQRLIELVS----R 118
           +L         +   G   F  +    +LV   EG           ++ L   ++    R
Sbjct: 72  ELS-AKHKGKSVDVLGYNIFENMELNEILVQLNEGREARALRIINKFKELNMSITIEDVR 130

Query: 119 MYLLDQGKQSVRICLSWLQ------------EIGTEG-------LIM-------LTGGSS 152
            +  +       I  + ++            +   +G       LI+       L   + 
Sbjct: 131 EFSGEGNIGRPHIAKAIVKNGFVSDIQTVFDKYLADGKPAAIDKLIIKPQKAIELIHNAG 190

Query: 153 GP--IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELP 210
           G   +          +  + L      F     + +  HR  D+    +  ++A    L 
Sbjct: 191 GLAVLAHPVLIGDDDLVRELLDL---NFDG---IEV-WHRKQDKEDNKRYKKIAEEFGL- 242

Query: 211 LVATNNSLFLSEED 224
            + T  S F ++E 
Sbjct: 243 -LMTGGSDFHNDEH 255


>gi|254992868|ref|ZP_05275058.1| DNA polymerase III PolC [Listeria monocytogenes FSL J2-064]
          Length = 415

 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L +HS  S ++   S++++  + A     AIAITD +   S  E        G++ I 
Sbjct: 342 AELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIF 401

Query: 72  GCQLDIDMQD 81
           G + ++    
Sbjct: 402 GIEANLIDDG 411


>gi|312978244|ref|ZP_07789988.1| DNA polymerase III, alpha chain, Gram-positive type [Lactobacillus
           crispatus CTV-05]
 gi|310894962|gb|EFQ44032.1| DNA polymerase III, alpha chain, Gram-positive type [Lactobacillus
           crispatus CTV-05]
          Length = 471

 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 75/506 (14%), Positives = 154/506 (30%), Gaps = 118/506 (23%)

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
           + F  D +     +++  +G +   +  T  ++  K A                      
Sbjct: 1   MTFSGDYQPVAHNFIRVMFGPDNSYRAGTIATVADKTAYGYA------------------ 42

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD--R 537
                     +   ++   +           L  ++  + G+ R    H AGIV+     
Sbjct: 43  ----------KHYDEEHDLKLRNAE------LDRLAAGVRGVKRTTGQHPAGIVVVPDDM 86

Query: 538 PLSQLVPMYRDVRS---DLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGV 594
            +    P+            +T ++   I    ++KFD LG    T+++       Q   
Sbjct: 87  DIYDFTPVSYPADDVNAAWLITHYDFHSIHD-NILKFDILGHDDPTMIRH-----LQDLS 140

Query: 595 KVDLSLIPFDDHETYHLLTTKG--------------TLGIFQLESSGMRQALEGMQPDCI 640
            +D   IP DD     L ++                TLG+ +  +  +R  LE  +P   
Sbjct: 141 GIDPLTIPPDDPGVMSLFSSPDILGVTPEQIQSETGTLGVPEFGTRFVRGMLEETKPTTF 200

Query: 641 EDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQ 700
            +++ +  L                N ++ I      +  ++     ++        +  
Sbjct: 201 SELLQISGLSHG-------TDVWLGNAEDLINQGICKLKNVIGCRDNIM--------MDL 245

Query: 701 LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYG 760
           +  G     A     ++        +       +    +    +              Y 
Sbjct: 246 IHWGVKPEVAFSTMESVRHGRGISDENMAILKKNKNIPDWYIPSCLKI---------KYM 296

Query: 761 FNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK---------------- 804
           F K+HA AY +++ + AW K +YP  +  A  ++  D  + +                  
Sbjct: 297 FPKAHATAYILMALRIAWFKVYYPEIYYTAYFSVRADLFDLVAMSHGKNTVKAAMKEIQD 356

Query: 805 -----------------FCQDARQFNIQIMPPSVNTPCV-DFKV-GDNRIYYSLAAIKGV 845
                               +  +  I+I    ++     DFK+   + I     A+ G+
Sbjct: 357 KGNDASAKDKSLMTVLEIANECLERGIKIKMVDIDQSEATDFKILDKHTILAPFNAVPGL 416

Query: 846 GTTTARHIMEASADKPFDSLEDFCSR 871
           G   A+ I+ A A+K F S ED   R
Sbjct: 417 GDNAAKQIVAARAEKKFLSKEDLAKR 442


>gi|315124218|ref|YP_004066222.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
            ICDCCJ07001]
 gi|315017940|gb|ADT66033.1| DNA polymerase III, alpha chain [Campylobacter jejuni subsp. jejuni
            ICDCCJ07001]
          Length = 234

 Score = 79.8 bits (195), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 31/84 (36%)

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
              +   E+ +LG Y SGHPLD +   +  +      +  +      I     +   +   
Sbjct: 1    MEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGEILSIGKIEDFKSMM 60

Query: 1009 TRKGSRIGWVTFSEPAKEYEANFF 1032
            ++   R G +   +    ++A  F
Sbjct: 61   SKNNKRYGRIEILDYYSSFDATVF 84


>gi|266622988|ref|ZP_06115923.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
 gi|288865254|gb|EFC97552.1| DNA polymerase III PolC-type [Clostridium hathewayi DSM 13479]
          Length = 595

 Score = 79.4 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQP 69
           V L  H+  S ++G   + +I+ +      PAIA+TD   + S  +    A   G   + 
Sbjct: 437 VELHCHTKMSDMDGVSEVKDIVKRAKKWGMPAIAVTDHGCVQSFPDA-NHALDKGDTFKI 495

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           + G +  +     L + N     F    
Sbjct: 496 LYGVEGYLVDDLKLLVDNPKDQTFADTY 523


>gi|223974061|gb|ACN31218.1| unknown [Zea mays]
          Length = 416

 Score = 79.4 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  HS++S  +G LS + ++++   +    +A+TD + +    E    A   G++ I G
Sbjct: 62  ELHSHSNHS--DGFLSPSALVERAHRNGVKVLALTDHDTMAGIPEAVSAASKFGMRIIPG 119

Query: 73  CQLD 76
            ++ 
Sbjct: 120 VEIS 123


>gi|226498434|ref|NP_001148541.1| protein trpH [Zea mays]
 gi|195620186|gb|ACG31923.1| protein trpH [Zea mays]
          Length = 416

 Score = 79.4 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  HS++S  +G LS + ++++   +    +A+TD + +    E    A   G++ I G
Sbjct: 62  ELHSHSNHS--DGFLSPSALVERAHRNGVKVLALTDHDTMAGIPEAVSAASKFGMRIIPG 119

Query: 73  CQLD 76
            ++ 
Sbjct: 120 VEIS 123


>gi|167464458|ref|ZP_02329547.1| DNA polymerase III PolC [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 686

 Score = 79.1 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 36/90 (40%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V   +H++ S ++G   +   +   A     AIAITD + +    + ++     G++ I 
Sbjct: 335 VEFHLHTTMSTMDGITPVGEYIKTAAKWGHKAIAITDHSGVQCYPDANKAGKKHGMKVIY 394

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G + ++       + N  +        +V 
Sbjct: 395 GLEANVVNDSVPIVENSKEIKLKEATYVVF 424



 Score = 74.8 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 2/101 (1%)

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           + ++   + L                 +      G + L  LVS  +  +   +   I  
Sbjct: 586 EQNLTQLNRLNDHVGKDLRNTRPFHCCIYAKDMVGKKNLYRLVSLSHT-EYFHRVACIPK 644

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           S L E+  EGLI+ +G   G    A    S + AE     +
Sbjct: 645 SKLIEL-REGLIIASGCEKGEFFEAVLNKSMEEAEGIAEFY 684


>gi|242277543|ref|YP_002989672.1| PHP domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242120437|gb|ACS78133.1| PHP domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 285

 Score = 79.1 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++         AIA+TD + +    E  +    +G++ + GC
Sbjct: 6  LHTHSTAS--DGTFTPKELVKAAKEAGLTAIALTDHDTMEGLPEALEAGVKSGVEVVPGC 63

Query: 74 QLDID 78
          +L ++
Sbjct: 64 ELSVE 68


>gi|149202134|ref|ZP_01879107.1| putative dna polymerase iii alpha chain protein [Roseovarius sp.
            TM1035]
 gi|149144232|gb|EDM32263.1| putative dna polymerase iii alpha chain protein [Roseovarius sp.
            TM1035]
          Length = 124

 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     G  + +A +V+ +Q+  T +G  + +VT  +         +
Sbjct: 16   AAALPEVAPGRRVTVAGLVLVRQRPGTARG--VVFVTLEDETGTINVVIW 63


>gi|260433217|ref|ZP_05787188.1| error-prone DNA polymerase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417045|gb|EEX10304.1| error-prone DNA polymerase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 143

 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 +       G  + +A +V+ +Q+  T KG  + +VT  +         +
Sbjct: 35   ACLPADRLEEPPEGARVTVAGLVILRQRPGTAKG--VIFVTLEDETGIVNVIVW 86


>gi|328479969|gb|EGF49010.1| DNA polymerase III PolC [Lactobacillus rhamnosus MTCC 5462]
          Length = 76

 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 97  PSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPID 156
              ++   T  G + L +LVS   +     +  R+  S LQ++  EGL++ +  SSG + 
Sbjct: 2   SHAIVFAKTQAGLKNLFKLVSLSNVK-YFYRVPRVPRSQLQKL-REGLLVGSACSSGEVF 59

Query: 157 RAFFFNSSQVAEKRLL 172
            A        A  +  
Sbjct: 60  TAMMQKGEAEARAKAA 75


>gi|325663120|ref|ZP_08151570.1| hypothetical protein HMPREF0490_02311 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470574|gb|EGC73804.1| hypothetical protein HMPREF0490_02311 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 182

 Score = 78.3 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 72/175 (41%), Positives = 106/175 (60%), Gaps = 8/175 (4%)

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           +  I ++D      + T  T G+FQLES+GM+  ++ ++P  +EDIIA +SLYRPGP+D 
Sbjct: 1   MGEIDYNDKLVLDSIGTGKTDGVFQLESAGMKNFMKELKPQSLEDIIAGISLYRPGPMDF 60

Query: 658 IVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAM 717
           I  Y   KN K  I    P ++P+L  T G I+YQEQVMQI + L+GY+L  +D+LRRAM
Sbjct: 61  IPQYIKGKNDKGSITYDCPQLEPILAPTYGCIVYQEQVMQIVRDLAGYTLGRSDLLRRAM 120

Query: 718 GKKIKEEMDKQKERFIS--------GASKNGISKTIAVNIFELLAKFADYGFNKS 764
            KK  + M+++++ F+         G   NGI +  A  I++ +  FA Y FNK 
Sbjct: 121 SKKKADVMERERQSFVYGNIDEGVPGCLNNGIDEKTANKIYDEMIDFAKYAFNKC 175


>gi|90021363|ref|YP_527190.1| hypothetical protein Sde_1718 [Saccharophagus degradans 2-40]
 gi|89950963|gb|ABD80978.1| PHP-like protein [Saccharophagus degradans 2-40]
          Length = 278

 Score = 78.3 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS YS  +G LS N+++ +  A     +A+TD +         + A   GI  I G 
Sbjct: 7  LHCHSFYS--DGILSPNDLVSRAKAHNVSYLALTDHDTTQGIAVAQKAAKDEGIDLIPGI 64

Query: 74 QLD 76
          +  
Sbjct: 65 EFS 67


>gi|239908604|ref|YP_002955346.1| PHP domain protein [Desulfovibrio magneticus RS-1]
 gi|239798471|dbj|BAH77460.1| PHP domain protein [Desulfovibrio magneticus RS-1]
          Length = 300

 Score = 78.3 bits (191), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 2/84 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H++ S  +G  +   ++   A+    A+AITD + L    E        G++ I G 
Sbjct: 6  LHTHTTAS--DGTATPAELVAMAASKGLAAVAITDHDTLAGLPEARAAGAEHGVEVIAGV 63

Query: 74 QLDIDMQDNLKMTNQGKTPFPTVP 97
          +L +  +           P    P
Sbjct: 64 ELSVADERGSIHLVGLFLPDTPGP 87


>gi|289673966|ref|ZP_06494856.1| error-prone DNA polymerase [Pseudomonas syringae pv. syringae FF5]
          Length = 200

 Score = 77.9 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 82/151 (54%), Gaps = 1/151 (0%)

Query: 521 LYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLT 580
             RH S H  G VI + PL  LVP+     +D  + Q++   ++  GL+K D L L  L+
Sbjct: 48  FPRHLSQHPGGFVISEHPLETLVPVENAAMADRTIIQWDKDDLDLVGLLKVDILALGMLS 107

Query: 581 LLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDC 639
            L+++ D +   RG +  L+ +P DD +TY +++   T+G+FQ+ES      L  ++P+ 
Sbjct: 108 ALRRTFDLVHLHRGQRWTLATLPGDDRKTYEMISRADTIGVFQIESRAQMAMLPRLRPEK 167

Query: 640 IEDIIALVSLYRPGPIDNIVVYNNRKNGKEK 670
             D++  V++ RPGPI   +V+   +    +
Sbjct: 168 FYDLVIEVAIVRPGPIQGDMVHPYLRRRNGE 198


>gi|126729294|ref|ZP_01745108.1| DNA polymerase III, alpha subunit, putative [Sagittula stellata E-37]
 gi|126710284|gb|EBA09336.1| DNA polymerase III, alpha subunit, putative [Sagittula stellata E-37]
          Length = 122

 Score = 77.9 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                         G  + +A +V+ +Q+  T KG  + +VT  +         +
Sbjct: 8    SATPARLLREVPNGARVTVAGLVILRQRPGTAKG--VIFVTLEDETGVINIVVW 59


>gi|297242785|ref|ZP_06926723.1| metal-dependent phosphoesterase (PHP family) [Gardnerella
          vaginalis AMD]
 gi|296888996|gb|EFH27730.1| metal-dependent phosphoesterase (PHP family) [Gardnerella
          vaginalis AMD]
          Length = 285

 Score = 77.9 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+ YS  +G  +  +++ +        +AITD +      +F + A A+ +  + G 
Sbjct: 11 LHCHTVYS--DGTATPEDLITQAKIVGLQGVAITDHDTTAGWHDFQEAAKASNVPVLFGS 68

Query: 74 QLD 76
          ++ 
Sbjct: 69 EIT 71


>gi|227495221|ref|ZP_03925537.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
 gi|226831673|gb|EEH64056.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
          Length = 80

 Score = 77.9 bits (190), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 825 CVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
            V+  +    +      +KG+   +A+ +++A  ++PF SL +  SR     L+   L  
Sbjct: 1   MVEETLSGKAVRLGFQQVKGLSRESAKRLVQARLEQPFISLSNVASRA---YLSEAELRL 57

Query: 885 LVFAGALDCFGYSRMQLLQSLD 906
           L  AGA +  G SR +      
Sbjct: 58  LGLAGAFESLGVSRREAAWQAR 79


>gi|283782933|ref|YP_003373687.1| PHP domain protein [Gardnerella vaginalis 409-05]
 gi|283442217|gb|ADB14683.1| PHP domain protein [Gardnerella vaginalis 409-05]
          Length = 321

 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+ YS  +G  +  +++ +        +AITD +      +F + A A+ +  + G 
Sbjct: 47  LHCHTVYS--DGTATPEDLITQAKIVGLQGVAITDHDTTAGWHDFQEAAKASNVPVLFGS 104

Query: 74  QLD 76
           ++ 
Sbjct: 105 EIT 107


>gi|125541161|gb|EAY87556.1| hypothetical protein OsI_08967 [Oryza sativa Indica Group]
          Length = 444

 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +G+LS   ++ +   +    +A+TD + +    E  + A    I+ I 
Sbjct: 101 VELHAHSTCS--DGSLSPAALVQRAHRNGVKVLALTDHDTMAGVPEAIESAKQCSIRIIP 158

Query: 72  GCQLD 76
           G ++ 
Sbjct: 159 GVEIS 163


>gi|46390125|dbj|BAD15560.1| putative PHP domain N-terminal region:PHP domain C-terminal region
           [Oryza sativa Japonica Group]
 gi|46390228|dbj|BAD15659.1| putative PHP domain N-terminal region:PHP domain C-terminal region
           [Oryza sativa Japonica Group]
 gi|125583712|gb|EAZ24643.1| hypothetical protein OsJ_08411 [Oryza sativa Japonica Group]
          Length = 444

 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +G+LS   ++ +   +    +A+TD + +    E  + A    I+ I 
Sbjct: 101 VELHAHSTCS--DGSLSPAALVQRAHRNGVKVLALTDHDTMAGVPEAIESAKQCSIRIIP 158

Query: 72  GCQLD 76
           G ++ 
Sbjct: 159 GVEIS 163


>gi|167948891|ref|ZP_02535965.1| DNA polymerase III, alpha subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 78

 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 10/69 (14%)

Query: 56  LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
           ++F Q A   GI+PI G  L +   D++               ++LLV   EGY+ L  L
Sbjct: 1   IKFYQAALGGGIKPIAGTDLWLRNPDDVNKP----------FRLLLLVQNLEGYRNLTRL 50

Query: 116 VSRMYLLDQ 124
           VSR Y   Q
Sbjct: 51  VSRSYREGQ 59


>gi|289673965|ref|ZP_06494855.1| error-prone DNA polymerase [Pseudomonas syringae pv. syringae FF5]
          Length = 155

 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 59/165 (35%), Positives = 87/165 (52%), Gaps = 11/165 (6%)

Query: 279 RRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYR 338
           RRC+F L       P  +  +     +   + LR     G+  R   G           R
Sbjct: 2   RRCTFDLGDLKYEYPHELVPKG----QTSTSWLRELTERGVRRRWPGGL------TPATR 51

Query: 339 QRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL 398
            +++ EL +IA  KF  YFL V D +++A+  +I    GRGS A S   YAL IT+++P 
Sbjct: 52  AQVEKELALIAEKKFDSYFLTVHDIVEFARSQHIL-CQGRGSAANSAVCYALGITELNPE 110

Query: 399 RFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERV 443
           + +LLFERF++ +R   PD D+DF  DRR+EVI+Y+  +YG  R 
Sbjct: 111 QSNLLFERFISRERNEPPDIDVDFEHDRREEVIQYIFRRYGRGRA 155


>gi|309798624|ref|ZP_07692897.1| DNA polymerase III subunit alpha [Streptococcus infantis SK1302]
 gi|308117766|gb|EFO55169.1| DNA polymerase III subunit alpha [Streptococcus infantis SK1302]
          Length = 157

 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)

Query: 805 FCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
           +  DA +   ++ P S+NT     K+ +  IY  L +IKG+    A  I+E   ++PF S
Sbjct: 9   YILDALEMGFELTPLSLNTIPYQDKLTEKTIYLGLKSIKGMPRDFAYWILE---NRPFSS 65

Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
           +EDF +R+        +L  LV  G  D F  
Sbjct: 66  VEDFVTRLPKNYQKLSLLTPLVEIGLFDSFEK 97


>gi|298253435|ref|ZP_06977227.1| metal-dependent phosphoesterase (PHP family) [Gardnerella
          vaginalis 5-1]
 gi|297532830|gb|EFH71716.1| metal-dependent phosphoesterase (PHP family) [Gardnerella
          vaginalis 5-1]
          Length = 306

 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+ YS  +G  +  +++ +        +AITD +      +F + A A+ +  + G 
Sbjct: 32 LHCHTVYS--DGTATPEDLITQAKIVGLQGVAITDHDTTAGWHDFQEAAKASNMPVLFGS 89

Query: 74 QLD 76
          ++ 
Sbjct: 90 EIT 92


>gi|78043953|ref|YP_361040.1| phosphotransferase domain-containing protein [Carboxydothermus
          hydrogenoformans Z-2901]
 gi|77996068|gb|ABB14967.1| PHP domain protein [Carboxydothermus hydrogenoformans Z-2901]
          Length = 278

 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H++ S  +G  +   ++     +    +A+TD ++    +E  +     G++ I G 
Sbjct: 4  LHTHTTAS--DGTCTPEALVRLAQKEGLKILAVTDHDSAAGVIEAVEAGKKYGVKVIPGV 61

Query: 74 QLDIDMQ 80
          ++ +  +
Sbjct: 62 EISVVFE 68


>gi|240146857|ref|ZP_04745458.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
 gi|257200990|gb|EEU99274.1| DNA polymerase III PolC-type [Roseburia intestinalis L1-82]
          Length = 697

 Score = 76.4 bits (186), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 2/95 (2%)

Query: 5   LEKSP-SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
           ++ SP   V L  H+  S ++G   + +I+ +       AIAITD  ++ +  + +    
Sbjct: 381 MDTSPEKRVELHCHTKMSDMDGVSEVKDIVKRAMKWGHKAIAITDHGDVQAFPDANHAIS 440

Query: 64  -AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
                + I G +  +       +TN          
Sbjct: 441 PDDDFKVIYGVEAYLVDDLKDIITNSKNQNLDDTY 475



 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 2/59 (3%)

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           G +  +D  + +   +            ++L +   G   L  L+   +L     +  R
Sbjct: 641 GME-TLDQVNQMGQASPETIMKMNTYHAIILATNDIGRINLYRLIYLSHLT-YYNKRPR 697


>gi|126462759|ref|YP_001043873.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Rhodobacter
            sphaeroides ATCC 17029]
 gi|221639781|ref|YP_002526043.1| Nucleic acid binding, OB-fold, tRNA/helicase-type [Rhodobacter
            sphaeroides KD131]
 gi|126104423|gb|ABN77101.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Rhodobacter
            sphaeroides ATCC 17029]
 gi|221160562|gb|ACM01542.1| Nucleic acid binding, OB-fold, tRNA/helicase-type [Rhodobacter
            sphaeroides KD131]
          Length = 140

 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                        G  + +A +V+ +Q+  T KG  + ++T  +         +
Sbjct: 27   AIPAGRLNEPPSGARVAVAGLVLVRQRPGTAKG--VIFLTLEDETGVVNVVVW 77


>gi|328947110|ref|YP_004364447.1| PHP domain protein [Treponema succinifaciens DSM 2489]
 gi|328447434|gb|AEB13150.1| PHP domain protein [Treponema succinifaciens DSM 2489]
          Length = 293

 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  + + ++   A  +  AIA+TD +N+   LE  +KA   GI+ I G 
Sbjct: 4  LHTHSTAS--DGTCTPSQLISYAAEKKISAIALTDHDNIDGILEAQEKAKELGIEFIPGI 61

Query: 74 QLDIDMQDN 82
          ++ I+    
Sbjct: 62 EISIEWPSG 70


>gi|291563573|emb|CBL42389.1| Predicted metal-dependent phosphoesterases (PHP family)
           [butyrate-producing bacterium SS3/4]
          Length = 287

 Score = 76.0 bits (185), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 59/181 (32%), Gaps = 34/181 (18%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS+ S  +G+L+   ++++       A+A+TD + +    E  + A    ++ I G 
Sbjct: 6   LHIHSTAS--DGSLTPTEVVNRANDLGLTAMALTDHDTVAGIDEALEAAKDLDMEVIPGI 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++    +                                 +L+S  +L +  ++     +
Sbjct: 64  EVSCIYKGKEIHILGLYIDHKDP-----------------KLLS--FLKEASRKRYDRNM 104

Query: 134 SWLQEIGTEG-------LIMLTGG---SSGPIDRAFFFNSS-QVAEKRLLTFKKLFGDRL 182
             L     +G       L+    G   +     RA   N      ++    +     DR 
Sbjct: 105 EMLAAFNKDGFEITEEDLLCGNPGTVITRAHFARALLKNGYVTSVDQAFKKYLN--PDRP 162

Query: 183 Y 183
           Y
Sbjct: 163 Y 163


>gi|319645712|ref|ZP_07999943.1| hypothetical protein HMPREF1012_00977 [Bacillus sp. BT1B_CT2]
 gi|317392259|gb|EFV73055.1| hypothetical protein HMPREF1012_00977 [Bacillus sp. BT1B_CT2]
          Length = 457

 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 71/174 (40%), Gaps = 8/174 (4%)

Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
           +A +I  L     +Y +N  +    A ++  +  ++     +        +  +  K+  
Sbjct: 1   MAYSIIALQELNLNYRYNPLY-WNTACLTVNSGGVENEEESDDPDKKKKTQKTDYGKVAS 59

Query: 805 FCQDARQFNIQIMPPSVNTPCVDFK--VGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
              + R+  I++  P +N     FK  + +N I + +  + G+G      I+   +++P+
Sbjct: 60  AIGNIRRRGIKVDLPDINKAGFGFKADIENNSIIFGMKGMNGIGDEVVHQII---SNRPY 116

Query: 863 DSLEDFCSRVDSKK-LNRRVLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWV 915
              EDF  R+     + +  +  L+  G  D FG  R  L++S  ++    +  
Sbjct: 117 TDFEDFLERMYYSGIIKKGQVIQLIKGGCFDSFGE-RKDLMKSFISLISEPKSK 169


>gi|73668928|ref|YP_304943.1| hypothetical protein Mbar_A1404 [Methanosarcina barkeri str.
           Fusaro]
 gi|72396090|gb|AAZ70363.1| hypothetical protein Mbar_A1404 [Methanosarcina barkeri str.
           Fusaro]
          Length = 215

 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 49/209 (23%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS YS  +G L    I+          IAITD N +   L+  +       + I+G 
Sbjct: 7   LHIHSKYS-SDGVLDPKKIVKTAIKRNLKGIAITDHNTIKGGLKAIEY-ETKDFKVIVGS 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++  D  + + +    +                     LI +VS +   +          
Sbjct: 65  EIMTDQGEVIGLFLSEEIKSN----------------NLINVVSEIKAQNG--------- 99

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
                      I++       + R+      + A   L+   + F  R            
Sbjct: 100 -----------IVIVPHPFDEMRRSALHPKEECA--SLIDCIEGFNSRCIF--------- 137

Query: 194 RYRESQVVQLAYTHELPLVATNNSLFLSE 222
           +    + V+ A  H LPLVA +++ F +E
Sbjct: 138 QKYNDKAVEYANKHNLPLVAGSDAHFANE 166


>gi|85706855|ref|ZP_01037946.1| putative DNA polymerase III alpha chain protein [Roseovarius sp. 217]
 gi|85668648|gb|EAQ23518.1| putative DNA polymerase III alpha chain protein [Roseovarius sp. 217]
          Length = 118

 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     G  I +A +V+ +Q+  T +G  + +VT  +         +
Sbjct: 10   AARLSEVSSGARITVAGLVLVRQRPGTARG--VVFVTLEDETGVVNVVIW 57


>gi|260438054|ref|ZP_05791870.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
           [Butyrivibrio crossotus DSM 2876]
 gi|292809533|gb|EFF68738.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
           [Butyrivibrio crossotus DSM 2876]
          Length = 280

 Score = 75.6 bits (184), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 29/158 (18%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L VHS+YS  +G  S   ++ +   +   A A+TD +      E       AGI+ I G 
Sbjct: 6   LHVHSTYS--DGTFSPAELVKEAVKNGISAFALTDHDTTDGIDEAIDAGGKAGIEVIPGI 63

Query: 74  QLDIDMQD------NLKMTNQGKTPFPTVPSIV--------LLVS--TAEG-------YQ 110
           ++    +D       L +  + K     +   +        LL+      G        +
Sbjct: 64  EISTSYKDKEIHIVGLFIDYKNKEFHDAIYEEIKRRDARNGLLIQKFNEAGFPVSLEVLE 123

Query: 111 RLI--ELVSRMYLLDQ--GKQSVRICLSWLQEIGTEGL 144
            +    +++R +       K  V+       +   +G 
Sbjct: 124 NMFPHSIITRAHFASYMTKKGYVKDNKEAFSKYLGDGC 161


>gi|94263315|ref|ZP_01287130.1| PHP-like [delta proteobacterium MLMS-1]
 gi|93456270|gb|EAT06400.1| PHP-like [delta proteobacterium MLMS-1]
          Length = 288

 Score = 75.2 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 74/256 (28%), Gaps = 62/256 (24%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+YS  +G +    ++D        A+A+TD + +    +    A    I  + G 
Sbjct: 6   LHTHSTYS--DGTMGPEELIDLALRRGLGALALTDHDTVAGVPDLLAHAAGKDILVMAGI 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL-----VSTAEGYQRLIELVSR---------- 118
           +L     ++              P ++ L            + L E+++R          
Sbjct: 64  ELSTWYGEDSMHILGYGIDHGHPPLLIALEEVQRARHR---RNL-EILTRLDELGIRIAY 119

Query: 119 ---MYLLDQGKQSVRICLSW------------LQEIGTEG-----------------LIM 146
                  +       I                  +   +G                 LI 
Sbjct: 120 KAVAGRENGQVGRPHIARELVRLGVVHDMHHAFLQYLRKGAAAYVDSFRIHALDAVRLIA 179

Query: 147 LTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFGDRLYVNLQRHRGYDRYRESQVVQLA 204
             GG       A   N+     + L       L G    + +  +  ++R +  Q+ QLA
Sbjct: 180 AAGGVPVLAHPAVLDNNLNSLPRLLPELVTAGLAG----LEIY-YPAHNRRQYRQLQQLA 234

Query: 205 YTHELPLVATNNSLFL 220
                 L+AT  + F 
Sbjct: 235 GE--WRLLATGGTDFH 248


>gi|330004311|ref|ZP_08304869.1| uracil-DNA glycosylase, family 4 [Klebsiella sp. MS 92-3]
 gi|328536683|gb|EGF63005.1| uracil-DNA glycosylase, family 4 [Klebsiella sp. MS 92-3]
          Length = 386

 Score = 75.2 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 56/188 (29%), Positives = 90/188 (47%), Gaps = 17/188 (9%)

Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
            +     + K G+S++ A  +++   KF  YGFNKSHA AY  ISYQ  ++KTH+P  F 
Sbjct: 1   MKITKIISEKPGLSESKAKEVWDAFEKFGSYGFNKSHAVAYTAISYQAMYLKTHHPAAFF 60

Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD-----NRIYYSLAAIK 843
           AA++T++ D  EK +   +DA    + +MPP +N      ++ +       +Y   +A+K
Sbjct: 61  AAALTIQDD--EKHRAVVKDALARGVIVMPPDINLSTDRIEIVELKDGRAALYAPFSAVK 118

Query: 844 GVGTTTARHIMEASA--DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY----- 896
           G     +  IM A       F+S   F   ++++  N RV E+L   GA           
Sbjct: 119 GCSEKGSLAIMRARERVGGKFESRAQFKEAIEARLCNIRVQEALDAVGAFASIEPGSEPA 178

Query: 897 ---SRMQL 901
              SR + 
Sbjct: 179 MAESRRKA 186


>gi|257464667|ref|ZP_05629038.1| metal-dependent phosphoesterase [Actinobacillus minor 202]
 gi|257450327|gb|EEV24370.1| metal-dependent phosphoesterase [Actinobacillus minor 202]
          Length = 273

 Score = 75.2 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H++ S  +G LS   ++ +        +AITD + +    E  + A    IQ I G 
Sbjct: 5   LHTHTTAS--DGLLSPTELVLRAVEQGVEMLAITDHDTVAGIAEAKKAAENQPIQLISGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++ I  QD                 + LL
Sbjct: 63  EVSIVWQDKNIHLAALNVDEQNPQLLKLL 91


>gi|240949250|ref|ZP_04753594.1| metal-dependent phosphoesterase [Actinobacillus minor NM305]
 gi|240296366|gb|EER47010.1| metal-dependent phosphoesterase [Actinobacillus minor NM305]
          Length = 273

 Score = 75.2 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H++ S  +G LS   ++ +        +AITD + +    E  + A    I+ I G 
Sbjct: 5   LHTHTTAS--DGLLSPTELVLRAVEQGVEMLAITDHDTVAGIAEAKKAAENQSIRLISGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++ I  QD                 + LL
Sbjct: 63  EISIVWQDKNIHLAALNVDEQNPQLLKLL 91


>gi|146276990|ref|YP_001167149.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Rhodobacter
            sphaeroides ATCC 17025]
 gi|145555231|gb|ABP69844.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Rhodobacter
            sphaeroides ATCC 17025]
          Length = 166

 Score = 75.2 bits (183), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 7/53 (13%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                         G  + +A +V+ +Q+  T +G  + ++T  +         
Sbjct: 26   RAVPAARLDEPPSGARVAVAGLVLVRQRPGTARG--VIFLTLEDETGVVNVVV 76


>gi|110834253|ref|YP_693112.1| polymerase and histidinol phosphatase PHP [Alcanivorax
          borkumensis SK2]
 gi|110647364|emb|CAL16840.1| Polymerase and Histidinol Phosphatase PHP, putative [Alcanivorax
          borkumensis SK2]
          Length = 278

 Score = 74.8 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 14 LQVHSSYSLL--EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L  HS    L  +G LS  +++ + A      +A+TD + L    E  Q A A G+  I 
Sbjct: 7  LHCHS----LASDGTLSPTDLVARAADYGVTHLALTDHDTLRGLEEAHQAAQARGLTLIN 62

Query: 72 GCQLDIDMQDN 82
          G +L +   + 
Sbjct: 63 GIELSVRHDNR 73


>gi|149914439|ref|ZP_01902970.1| DNA polymerase III alpha subunit, putative [Roseobacter sp. AzwK-3b]
 gi|149811958|gb|EDM71791.1| DNA polymerase III alpha subunit, putative [Roseobacter sp. AzwK-3b]
          Length = 127

 Score = 74.8 bits (182), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                     G  + +A +V+ +Q+  T KG  + ++T  +         +
Sbjct: 27   AARLSEPPEGARVAVAGLVILRQRPGTAKG--VIFLTLEDETGVVNVVVW 74


>gi|226343853|gb|ACO48549.1| DnaE [Escherichia coli]
          Length = 142

 Score = 74.4 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 3/129 (2%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +   +        E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +
Sbjct: 14  EYFLPQFPTGNMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQ 73

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP
Sbjct: 74  MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNP 133

Query: 411 DRMSMPDFD 419
           +R+SMPDFD
Sbjct: 134 ERVSMPDFD 142


>gi|226343799|gb|ACO48522.1| DnaE [Escherichia coli]
          Length = 142

 Score = 74.4 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 3/129 (2%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +   +        E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +
Sbjct: 14  EYFLPQFPTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQ 73

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP
Sbjct: 74  MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNP 133

Query: 411 DRMSMPDFD 419
           +R+SMPDFD
Sbjct: 134 ERVSMPDFD 142


>gi|226343795|gb|ACO48520.1| DnaE [Escherichia coli]
 gi|226343797|gb|ACO48521.1| DnaE [Escherichia coli]
 gi|226343803|gb|ACO48524.1| DnaE [Escherichia coli]
 gi|226343805|gb|ACO48525.1| DnaE [Escherichia coli]
 gi|226343807|gb|ACO48526.1| DnaE [Escherichia coli]
 gi|226343809|gb|ACO48527.1| DnaE [Escherichia coli]
 gi|226343811|gb|ACO48528.1| DnaE [Escherichia coli]
 gi|226343813|gb|ACO48529.1| DnaE [Escherichia coli]
 gi|226343815|gb|ACO48530.1| DnaE [Escherichia coli]
 gi|226343819|gb|ACO48532.1| DnaE [Escherichia coli]
 gi|226343821|gb|ACO48533.1| DnaE [Escherichia coli]
 gi|226343823|gb|ACO48534.1| DnaE [Escherichia coli]
 gi|226343827|gb|ACO48536.1| DnaE [Escherichia coli]
 gi|226343829|gb|ACO48537.1| DnaE [Escherichia coli]
 gi|226343831|gb|ACO48538.1| DnaE [Escherichia coli]
 gi|226343833|gb|ACO48539.1| DnaE [Escherichia coli]
 gi|226343835|gb|ACO48540.1| DnaE [Escherichia coli]
 gi|226343837|gb|ACO48541.1| DnaE [Escherichia coli]
 gi|226343839|gb|ACO48542.1| DnaE [Escherichia coli]
 gi|226343841|gb|ACO48543.1| DnaE [Escherichia coli]
 gi|226343843|gb|ACO48544.1| DnaE [Escherichia coli]
 gi|226343845|gb|ACO48545.1| DnaE [Escherichia coli]
 gi|226343847|gb|ACO48546.1| DnaE [Escherichia coli]
 gi|226343849|gb|ACO48547.1| DnaE [Escherichia coli]
 gi|226343851|gb|ACO48548.1| DnaE [Escherichia coli]
 gi|226343855|gb|ACO48550.1| DnaE [Escherichia coli]
 gi|226343857|gb|ACO48551.1| DnaE [Escherichia coli]
 gi|226343859|gb|ACO48552.1| DnaE [Escherichia coli]
          Length = 142

 Score = 74.4 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 3/129 (2%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +   +        E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +
Sbjct: 14  EYFLPQFPTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQ 73

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP
Sbjct: 74  MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNP 133

Query: 411 DRMSMPDFD 419
           +R+SMPDFD
Sbjct: 134 ERVSMPDFD 142


>gi|159045272|ref|YP_001534066.1| hypothetical protein Dshi_2732 [Dinoroseobacter shibae DFL 12]
 gi|157913032|gb|ABV94465.1| hypothetical protein Dshi_2732 [Dinoroseobacter shibae DFL 12]
          Length = 137

 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 +       G  +R+A +V+ +Q+  T  G  + ++T  +         +
Sbjct: 27   ACVPAQLLDRPPNGARVRVAGLVLLRQRPGTAHG--VIFITLEDETGTINVVVW 78


>gi|226343825|gb|ACO48535.1| DnaE [Escherichia coli]
          Length = 142

 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 69/127 (54%), Positives = 84/127 (66%), Gaps = 3/127 (2%)

Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMK 352
              +        E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M 
Sbjct: 16  FLPQFPTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMG 75

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R
Sbjct: 76  FPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPER 135

Query: 413 MSMPDFD 419
           +SMPDFD
Sbjct: 136 VSMPDFD 142


>gi|226343801|gb|ACO48523.1| DnaE [Escherichia coli]
          Length = 142

 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 69/127 (54%), Positives = 84/127 (66%), Gaps = 3/127 (2%)

Query: 296 IEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIARMK 352
              +        E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +M 
Sbjct: 16  FLPQFPTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMG 75

Query: 353 FSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDR 412
           F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP+R
Sbjct: 76  FPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPER 135

Query: 413 MSMPDFD 419
           +SMPDFD
Sbjct: 136 VSMPDFD 142


>gi|317154883|ref|YP_004122931.1| PHP domain-containing protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316945134|gb|ADU64185.1| PHP domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 286

 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++         AIA+TD + L    E  +     GI+ I GC
Sbjct: 5  LHTHSTAS--DGTLSPTELVRLAREIGLDAIALTDHDTLGGLDEAVEAGKTCGIEVIRGC 62

Query: 74 QLDIDMQDNLKMTN 87
          +L ++        +
Sbjct: 63 ELSLESPRGAGWMH 76


>gi|91203372|emb|CAJ71025.1| unknown protein [Candidatus Kuenenia stuttgartiensis]
          Length = 422

 Score = 73.7 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 6   EKSPSF--VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
           EK+P F    L +H+++S  +G  +   ++D+       AIAITD + +   L   +   
Sbjct: 145 EKAPDFGISDLHIHTNFS--DGTATPEEVVDEAIRLGLSAIAITDHDTIQGFLRADKYNK 202

Query: 64  AAGIQPIIGCQLD 76
              +Q I   ++ 
Sbjct: 203 GGNLQIIPAIEIS 215


>gi|297836026|ref|XP_002885895.1| PHP domain-containing protein [Arabidopsis lyrata subsp. lyrata]
 gi|297331735|gb|EFH62154.1| PHP domain-containing protein [Arabidopsis lyrata subsp. lyrata]
          Length = 434

 Score = 73.7 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  HS+ S  +G LS + ++++   +    +++TD + +    E  +     GI+ I G
Sbjct: 70  ELHSHSNRS--DGFLSPSKLVERAHNNGVKVLSLTDHDTMAGIPEAVEAGRRFGIKIIPG 127

Query: 73  CQLDIDMQDN 82
            ++       
Sbjct: 128 IEISTLFGSR 137


>gi|84500008|ref|ZP_00998274.1| DNA polymerase III, alpha subunit, putative [Oceanicola batsensis
            HTCC2597]
 gi|84391942|gb|EAQ04210.1| DNA polymerase III, alpha subunit, putative [Oceanicola batsensis
            HTCC2597]
          Length = 146

 Score = 73.7 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                        +G  + +A +V+ +Q+  T KG  + ++T  +         +
Sbjct: 25   ACLPAALLDRPPQGARVAVAGLVILRQRPGTAKG--VIFITLEDETGVVNVIVW 76


>gi|194430795|ref|ZP_03063190.1| PHP domain protein [Escherichia coli B171]
 gi|194411161|gb|EDX27588.1| PHP domain protein [Escherichia coli B171]
          Length = 281

 Score = 73.7 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  S   ++     +   A+A+TD +      E    A    +  + G 
Sbjct: 4  LHTHSTAS--DGTFSPKELVILAKKEGLQALALTDHDTTQGLKEAYLTAKEVDLPFLCGV 61

Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSI 99
          ++ I  +        G    P +P I
Sbjct: 62 EISIKFEGPGHFHLLGYFLQPEIPEI 87


>gi|192973057|gb|ACF06956.1| nucleic acid binding OB-fold tRNA/helicase type protein [uncultured
            Roseobacter sp.]
          Length = 130

 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 7/54 (12%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +        G  + +A +V+ +Q+  T  G  + ++T  +         +
Sbjct: 20   AALPHAMLELPPNGARVTVAGLVLVRQRPGTANG--VIFITLEDETGVCNVIVW 71


>gi|323699499|ref|ZP_08111411.1| PHP domain protein [Desulfovibrio sp. ND132]
 gi|323459431|gb|EGB15296.1| PHP domain protein [Desulfovibrio desulfuricans ND132]
          Length = 286

 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H++ S  +G LS   +++        AIA+TD +      E  +     G++ I G 
Sbjct: 5  LHTHTTAS--DGTLSPTELVELAGETGLDAIAVTDHDTFQGVAEAVEAGKRLGVEVIPGA 62

Query: 74 QLDIDMQDNLKMTN 87
          +L ++  +     +
Sbjct: 63 ELSLESPEGAGWIH 76


>gi|84686147|ref|ZP_01014042.1| putative dna polymerase iii alpha chain protein [Maritimibacter
            alkaliphilus HTCC2654]
 gi|84665674|gb|EAQ12149.1| putative dna polymerase iii alpha chain protein [Rhodobacterales
            bacterium HTCC2654]
          Length = 141

 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 7/53 (13%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +        G  + +A +V+ +Q+  T  G  + ++T  +         +
Sbjct: 21   AVPHRMLDRPHEGARVTVAGLVLVRQRPGTANG--VVFITLEDETGIANIVVW 71


>gi|126725610|ref|ZP_01741452.1| DNA polymerase III, alpha subunit, putative [Rhodobacterales
            bacterium HTCC2150]
 gi|126704814|gb|EBA03905.1| DNA polymerase III, alpha subunit, putative [Rhodobacterales
            bacterium HTCC2150]
          Length = 128

 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                ++       G+ + +A +V+ +Q+  T KG  + ++T  +         +
Sbjct: 20   ACLPHDRLNDPPNGSLVAVAGLVLVRQRPGTAKG--VIFLTLEDETGVSNIVVW 71


>gi|145629509|ref|ZP_01785307.1| hypothetical protein CGSHi22121_08818 [Haemophilus influenzae
           22.1-21]
 gi|145639003|ref|ZP_01794611.1| hypothetical protein CGSHiII_02415 [Haemophilus influenzae PittII]
 gi|144978352|gb|EDJ88116.1| hypothetical protein CGSHi22121_08818 [Haemophilus influenzae
           22.1-21]
 gi|145271975|gb|EDK11884.1| hypothetical protein CGSHiII_02415 [Haemophilus influenzae PittII]
 gi|309750963|gb|ADO80947.1| Conserved hypothetical protein [Haemophilus influenzae R2866]
          Length = 274

 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 6/106 (5%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + K      L  HS  S  +G LS   ++ +  A     +A+ D + +    E    A  
Sbjct: 1   MTKKYD---LHCHS--SASDGVLSPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKE 55

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            GI+ I G ++     +   +   G     T P +  L+ + +  +
Sbjct: 56  VGIELITGVEIS-TNWEGRGIHIVGLNFDKTHPKMTALLQSQKALR 100


>gi|83814693|ref|YP_445199.1| hypothetical protein SRU_1067 [Salinibacter ruber DSM 13855]
 gi|83756087|gb|ABC44200.1| conserved hypothetical protein [Salinibacter ruber DSM 13855]
          Length = 277

 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          +  +P +  L  H+  S  +G L+   ++ + A     A A+TD + +       + A A
Sbjct: 1  MPDAPVYADLHAHTQCS--DGHLAPEALVARAAEQGLQAFAVTDHDTVAGLPAAREAAAA 58

Query: 65 AGIQPIIGCQLDIDMQDN 82
           G++ + G +L   +   
Sbjct: 59 HGLRLVPGVELSTAVDGR 76


>gi|295394595|ref|ZP_06804814.1| PHP domain protein [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972488|gb|EFG48344.1| PHP domain protein [Brevibacterium mcbrellneri ATCC 49030]
          Length = 279

 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS++S  +G  +   +L + +      + +TD + +       Q A   G+Q + G 
Sbjct: 4   LHTHSAFS--DGTQTPEELLAQASDAGVTTLGLTDHDTVAGWSPAVQAARTHGVQLVRGM 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
           ++    Q  + +        P    +     T E
Sbjct: 62  EVSCRFQ-GVSVHMLSYLHNPDGARLT--AQTEE 92


>gi|218660311|ref|ZP_03516241.1| DNA polymerase III protein, alpha subunit [Rhizobium etli IE4771]
          Length = 240

 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/197 (26%), Positives = 83/197 (42%), Gaps = 12/197 (6%)

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS-TVVSQKDRPR 247
           + G DR   + +  LA  + +PL+ATN  L+   E     DV++A+     +        
Sbjct: 49  YDGRDRQVFAVLAMLAARNRVPLIATNQPLYHHPERRPLSDVVIAIREHVQISQAGFLLA 108

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEE 307
              + YLK+  EM+ IF D P+A+ENT     + +F L+              +D  +  
Sbjct: 109 PNAERYLKDSREMMRIFGDYPDAVENTQVFFGKLTFSLKELQHNY-----PPENDPGETP 163

Query: 308 ENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWA 367
           +  L     AG   R   G            Q++D+EL +I    ++ YFL V   IQ A
Sbjct: 164 QQTLERLTRAGAARRYPGGV------PPKVAQQIDYELKLIGDKNYASYFLTVHRIIQHA 217

Query: 368 KKNNIPVGPGRGSGAGS 384
           + +   +  GRGS    
Sbjct: 218 RYDLKVLCQGRGSAGKF 234


>gi|262067830|ref|ZP_06027442.1| putative DNA polymerase III PolC-type [Fusobacterium periodonticum
           ATCC 33693]
 gi|291378554|gb|EFE86072.1| putative DNA polymerase III PolC-type [Fusobacterium periodonticum
           ATCC 33693]
          Length = 868

 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-AAGIQPI 70
             L  H+ YS  +   S  + L    +++  A+AITD  ++F  + F  +       + I
Sbjct: 180 AELHCHTMYSKNDALSSPEDYLKAFNSNKCHAMAITDHGSVFGFIPFVNQLKGKTDKKLI 239

Query: 71  IGCQLD 76
           +G ++ 
Sbjct: 240 LGAEMY 245



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/471 (10%), Positives = 140/471 (29%), Gaps = 105/471 (22%)

Query: 98  SIVLLVST--------------AEGYQRLIELVSRMYL----------LDQGKQSVRICL 133
            ++LL+ T               +G   L +++++ Y                +   I  
Sbjct: 369 HLILLLKTPDEEIDYHGEKLKINKGLVELYKIITKSYTDYFSTPTEADKKMYGKRPVIPY 428

Query: 134 SWLQEIG-TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF--KKLFG--DRLYVNLQR 188
            +L +    +  I+ +  + G   +       +   + +      ++    + +++    
Sbjct: 429 EYLFQPEIRKHFIITSACAFGKHMKLITEGKEKEFREWIKNLDAVEIHPSWNNIFM--VE 486

Query: 189 HRGYDR--------YRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
           H+ ++             ++ ++     +P +  +++   S+ED              ++
Sbjct: 487 HKDFENIKTEEDVYALHRKIYKICKEENVPCIIVSDAHITSKEDRVLRSNFKNGYIHLIL 546

Query: 241 SQ---KDRPRVTPDHYLKNRSEMVSIFSDLPEA-----LENTVEIARRCSFILQVHAPIL 292
           +     D  R + D      ++   +  D              EI    +   ++    +
Sbjct: 547 NNFSKGDEQRTSTDEDFNIETQPYVMSYDDVIRDYTKQGFTLEEIEEMHNNTNKLAEQCI 606

Query: 293 PRFIEKECDD-------IQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFEL 345
             F      +            + E+          + ++         +  ++R+++EL
Sbjct: 607 NGFDITILPNKLFLPEFPNMNSKEEMPKMVWEEAIKKYSKDGTK-ETIDKKIKERIEYEL 665

Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPL------R 399
            +     F   +++     + +++    VG  RGS    + +  L I++++PL       
Sbjct: 666 ELTRESGFETLYMLAYKSCRDSEELGYIVG-SRGSVGSMIISNLLKISEVNPLDSHYYCE 724

Query: 400 FSLLFERFLN-------------------------------------------PDRMSMP 416
                E +                                               +  +P
Sbjct: 725 HCHNIEWYEEEGKTGLDLPDKTCSVCGNIMKGDGVSIESHNFVGWIEKDENGKIMKTKIP 784

Query: 417 DFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQM 467
           D D++F ++ +  V + V + +G E   +  T    Q  A   D+ R +  
Sbjct: 785 DIDLNFSENVQSSVQQRVIDLFGKENAIKSGTQQVYQEDALKNDIFRNIPN 835


>gi|75758943|ref|ZP_00739053.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
            israelensis ATCC 35646]
 gi|74493544|gb|EAO56650.1| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar
            israelensis ATCC 35646]
          Length = 159

 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 10/102 (9%)

Query: 932  GTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIR 991
            G   D   +E+ +     ++FE E+ VLG Y SGH LD             +E       
Sbjct: 6    GEAPDSELIEQITKYTDRIKFEKEREVLGLYISGHVLDRLAE------PTDWEGLDDATH 59

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               + L       +  +T+KG  + ++       E     FP
Sbjct: 60   TTMVAL----TEARVIRTKKGDNMAFLRVDTLEGERSLTLFP 97


>gi|258516249|ref|YP_003192471.1| PHP domain-containing protein [Desulfotomaculum acetoxidans DSM
          771]
 gi|257779954|gb|ACV63848.1| PHP domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 275

 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH++ S  +G  S   ++ +       AIAITD + L   L   ++A    I  + G 
Sbjct: 5  LHVHTTAS--DGTDSPEEVVKRAWRLGLEAIAITDHDVLEGILPAQKEARDKNIDIVPGV 62

Query: 74 QLD 76
          +L 
Sbjct: 63 ELS 65


>gi|294507082|ref|YP_003571140.1| hypothetical protein SRM_01266 [Salinibacter ruber M8]
 gi|294343409|emb|CBH24187.1| conserved hypothetical protein [Salinibacter ruber M8]
          Length = 531

 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 3   QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
             +  +P +  L  H+  S  +G L+   ++ + A     A A+TD + +       + A
Sbjct: 253 APMPDAPVYADLHTHTQCS--DGHLAPEALVARAAEQGLQAFAVTDHDTVAGLPAAREAA 310

Query: 63  CAAGIQPIIGCQLDIDMQDN 82
            A G++ + G +L   +   
Sbjct: 311 AAHGLRLVSGVELSTAVDGR 330


>gi|315185557|gb|EFU19326.1| PHP domain protein [Spirochaeta thermophila DSM 6578]
          Length = 283

 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +GALS + ++ + A      +A+TD +      E S+ A   GI  I G 
Sbjct: 5   LHTHSTAS--DGALSPSLLIKEAARLGIGLLALTDHDTTSGLEEASRAAREEGISFIPGI 62

Query: 74  QLDIDMQDN--LKMTNQGKTPFPTVPSIV 100
           ++++  +      +        P +  ++
Sbjct: 63  EIEVAHEGGEFHLLGLGIDASHPVLGHLL 91


>gi|258404845|ref|YP_003197587.1| PHP domain-containing protein [Desulfohalobium retbaense DSM
          5692]
 gi|257797072|gb|ACV68009.1| PHP domain protein [Desulfohalobium retbaense DSM 5692]
          Length = 291

 Score = 72.5 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G L+   ++     +Q  A+A+TD +      E  +     G++ I GC
Sbjct: 6  LHTHSNAS--DGTLTPRELIALARQEQVAAVALTDHDTTMGLPEAIEAGRELGVEVIPGC 63

Query: 74 QLDIDMQDN 82
          +L +D    
Sbjct: 64 ELSVDFPGG 72


>gi|308235628|ref|ZP_07666365.1| PHP domain protein [Gardnerella vaginalis ATCC 14018]
 gi|311114376|ref|YP_003985597.1| PHP domain-containing protein [Gardnerella vaginalis ATCC 14019]
 gi|310945870|gb|ADP38574.1| PHP domain protein [Gardnerella vaginalis ATCC 14019]
          Length = 295

 Score = 72.5 bits (176), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+ YS  +G  S  +++++        +AITD +      +F + A  A    I G 
Sbjct: 25 LHCHTFYS--DGTKSPEDLVNEAKTIGLKGVAITDHDTTAGWSDFKEAANIADFPVIFGS 82

Query: 74 QLD 76
          ++ 
Sbjct: 83 EIT 85


>gi|317133650|ref|YP_004092964.1| PHP domain protein [Ethanoligenens harbinense YUAN-3]
 gi|315471629|gb|ADU28233.1| PHP domain protein [Ethanoligenens harbinense YUAN-3]
          Length = 295

 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+  S  +G++ +  +           +A+TD +++       + A   G++ I G 
Sbjct: 5   LHCHTRVS--DGSMRVEELAAYAVRIGLDCLAVTDHDSMDGVARAQKAAAGTGLRVIPGL 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           ++        K  +      P    ++ L 
Sbjct: 63  EISAYDHVRGKKVHLLCYAPPKPDELLALC 92


>gi|307718423|ref|YP_003873955.1| hypothetical protein STHERM_c07240 [Spirochaeta thermophila DSM
          6192]
 gi|306532148|gb|ADN01682.1| hypothetical protein STHERM_c07240 [Spirochaeta thermophila DSM
          6192]
          Length = 283

 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +GALS + ++ + A      +A+TD +      E S+ A   GI  I G 
Sbjct: 5  LHTHSTAS--DGALSPSLLIKEAARLGIGLLALTDHDTTSGLEEASRAAREEGISFIPGI 62

Query: 74 QLDIDMQDN 82
          ++++  +  
Sbjct: 63 EMEVAHEGG 71


>gi|110679213|ref|YP_682220.1| DNA polymerase III alpha subunit, putative [Roseobacter denitrificans
            OCh 114]
 gi|109455329|gb|ABG31534.1| DNA polymerase III alpha subunit, putative [Roseobacter denitrificans
            OCh 114]
          Length = 131

 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 7/50 (14%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
              +     +   + +A +V+ +Q+  T KG  + ++T  +         +
Sbjct: 29   ARQLTQPPQNARVAVAGIVILRQRPGTAKG--VIFLTLEDETGVVNVIVW 76


>gi|296134084|ref|YP_003641331.1| PHP domain protein [Thermincola sp. JR]
 gi|296032662|gb|ADG83430.1| PHP domain protein [Thermincola potens JR]
          Length = 287

 Score = 72.1 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH++ S  +G L+   ++         A+AITD + +    E  ++A   G + I G 
Sbjct: 8  LHVHTTAS--DGTLTPAELIRYAKGRNLAAVAITDHDTIDGLPEALKEAKQQGFELIPGI 65

Query: 74 QLDIDMQ 80
          ++ ++  
Sbjct: 66 EISVEHP 72


>gi|148546652|ref|YP_001266754.1| phosphotransferase domain-containing protein [Pseudomonas putida
           F1]
 gi|148510710|gb|ABQ77570.1| PHP C-terminal domain protein [Pseudomonas putida F1]
          Length = 286

 Score = 72.1 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +GALS + ++ +       A+A+TD + L    E  Q     G++ + G 
Sbjct: 5   LHCHSTAS--DGALSPSVLVARAHEHGVQALALTDHDTLEGLPEARQACVDLGMRWVSGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           +L                P    P   LL 
Sbjct: 63  ELSCTWGGATIHVLGYDFPLDAPP---LLA 89


>gi|167561430|ref|ZP_02354346.1| error-prone DNA polymerase [Burkholderia oklahomensis EO147]
          Length = 104

 Score = 72.1 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 2/52 (3%)

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                      G   R   +V ++Q   T KG  + +VT  +          P
Sbjct: 1    SAAALRDRRNGRLARACGLVTARQMPGTAKG--VLFVTLEDETGCVNVIVRP 50


>gi|291538550|emb|CBL11661.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Roseburia intestinalis XB6B4]
          Length = 289

 Score = 72.1 bits (175), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VHS+ S  +G  +   ++ +       AIA+TD +      +    A  AGI+ I G 
Sbjct: 8  LHVHSTES--DGTFTPTEVIAEAKKAGLSAIALTDHDTATGIRKAMGAAKEAGIELIPGI 65

Query: 74 QLDIDM 79
          +L    
Sbjct: 66 ELSTAY 71


>gi|189438970|ref|YP_001954051.1| putative metal-dependent phosphoesterse [Bifidobacterium longum
           DJO10A]
 gi|239620802|ref|ZP_04663833.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|322689585|ref|YP_004209319.1| hypothetical protein BLIF_1402 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|189427405|gb|ACD97553.1| Putative metal-dependent phosphoesterse [Bifidobacterium longum
           DJO10A]
 gi|239516378|gb|EEQ56245.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|291516155|emb|CBK69771.1| Predicted metal-dependent phosphoesterases (PHP family)
           [Bifidobacterium longum subsp. longum F8]
 gi|320460921|dbj|BAJ71541.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 297

 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 79/249 (31%), Gaps = 66/249 (26%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H+++S  +G  +   + ++  A     +AI+D +      E    A   G+  + G +
Sbjct: 21  HCHTAFS--DGTETPATLAEQSKALGLKGVAISDHDTTAGWPEAEAAAHRVGLPLLRGTE 78

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEGY----QRLIELVSR----------M 119
           +     +N+ +   G    PT   I  L  +T        QR++EL+SR           
Sbjct: 79  IT-ATDENVSVHMLGYQYDPTNQHITDLFANTRAARLQRTQRMVELLSRDYPITWQSVLA 137

Query: 120 YLLDQGK---QSVRICLSWLQE------------------------------------IG 140
            + + GK       I  + +                                       G
Sbjct: 138 QVKEGGKTTIGRPHIADALVSAGVYRTRSEAFADAVSASSKYYIPTPSPTSHEVVAAVKG 197

Query: 141 TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV 200
             G+I++    +G + R     S    E  +            + +  HRG    +  ++
Sbjct: 198 AGGVILI--AHAGDVSRNRRLLSDDQIEALISEGLDG------LEV-WHRGNSPEQRERL 248

Query: 201 VQLAYTHEL 209
           + +   H+L
Sbjct: 249 LTICRRHQL 257


>gi|46190609|ref|ZP_00121259.2| COG0613: Predicted metal-dependent phosphoesterases (PHP family)
           [Bifidobacterium longum DJO10A]
          Length = 289

 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 79/249 (31%), Gaps = 66/249 (26%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H+++S  +G  +   + ++  A     +AI+D +      E    A   G+  + G +
Sbjct: 13  HCHTAFS--DGTETPATLAEQSKALGLKGVAISDHDTTAGWPEAEAAAHRVGLPLLRGTE 70

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEGY----QRLIELVSR----------M 119
           +     +N+ +   G    PT   I  L  +T        QR++EL+SR           
Sbjct: 71  IT-ATDENVSVHMLGYQYDPTNQHITDLFANTRAARLQRTQRMVELLSRDYPITWQSVLA 129

Query: 120 YLLDQGK---QSVRICLSWLQE------------------------------------IG 140
            + + GK       I  + +                                       G
Sbjct: 130 QVKEGGKTTIGRPHIADALVSAGVYRTRSEAFADAVSASSKYYIPTPSPTSHEVVAAVKG 189

Query: 141 TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV 200
             G+I++    +G + R     S    E  +            + +  HRG    +  ++
Sbjct: 190 AGGVILI--AHAGDVSRNRRLLSDDQIEALISEGLDG------LEV-WHRGNSPEQRERL 240

Query: 201 VQLAYTHEL 209
           + +   H+L
Sbjct: 241 LTICRRHQL 249


>gi|26991185|ref|NP_746610.1| trpH family protein [Pseudomonas putida KT2440]
 gi|24986232|gb|AAN70074.1|AE016647_4 trpH family protein [Pseudomonas putida KT2440]
          Length = 286

 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +GALS + ++ +       A+A+TD + L    E  Q     G++ + G 
Sbjct: 5   LHCHSTAS--DGALSPSVLVARAHEHGVQALALTDHDTLEGLPEARQACVDLGMRWVSGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           +L                P    P   LL 
Sbjct: 63  ELSCTWGGATIHVLGYDFPLDAPP---LLA 89


>gi|226343817|gb|ACO48531.1| DnaE [Escherichia coli]
          Length = 141

 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 68/128 (53%), Positives = 84/128 (65%), Gaps = 3/128 (2%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +   +        E+ L  +A  GLE RLA        +     +Y +RL+ EL VI +
Sbjct: 14  EYFLPQFPTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQ 73

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N +PVGPGRGSGAGS+ AYAL ITD+DPL F LLFERFLNP
Sbjct: 74  MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNP 133

Query: 411 DRMSMPDF 418
           +R+SMPDF
Sbjct: 134 ERVSMPDF 141


>gi|312876459|ref|ZP_07736443.1| PHP domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796817|gb|EFR13162.1| PHP domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 279

 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH+++S  +G L+   ++         AIAITD +     +    +    GI+ + G 
Sbjct: 4  LHVHTTFS--DGTLTPQEVVKLAKEKGLFAIAITDHDTTDGVIHAIDEGNRLGIKVVSGV 61

Query: 74 QLDIDMQ 80
          ++  D +
Sbjct: 62 EISADFE 68


>gi|222529901|ref|YP_002573783.1| PHP domain-containing protein [Caldicellulosiruptor bescii DSM
          6725]
 gi|222456748|gb|ACM61010.1| PHP domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 279

 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH+++S  +G L+   ++         AIAITD +     +    +    GI+ + G 
Sbjct: 4  LHVHTTFS--DGTLTPQEVVKLAKEKGLFAIAITDHDTTDGVIHAIDEGNRLGIKVVSGV 61

Query: 74 QLDIDMQ 80
          ++  D +
Sbjct: 62 EISADFE 68


>gi|309973087|gb|ADO96288.1| Conserved hypothetical protein [Haemophilus influenzae R2846]
          Length = 274

 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + K      L  HS+ S  +G LS   ++ +  A     +A+ D + +    E    A  
Sbjct: 1   MTKKYD---LHCHSTAS--DGVLSPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKE 55

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            GI+ I G ++     +   +   G     T P +  L+ + +  +
Sbjct: 56  VGIELITGVEIS-TNWEGRGIHIVGLNFDKTHPKMTALLQSQKALR 100


>gi|325960100|ref|YP_004291566.1| PHP domain-containing protein [Methanobacterium sp. AL-21]
 gi|325331532|gb|ADZ10594.1| PHP domain protein [Methanobacterium sp. AL-21]
          Length = 210

 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 8/89 (8%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA---AGIQPII 71
             HS YS  +G +    ++          IA+TD   +  ALE    A       I+ II
Sbjct: 6   HTHSKYSA-DGYVKPRELVKAAVKKGLDGIAVTDHGTIKGALE----AKKYETNKIKVII 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           G ++  ++ + + +    +        +V
Sbjct: 61  GSEILTNIGEVIGLFLMDEVVSYDFYDVV 89


>gi|148272371|ref|YP_001221932.1| hypothetical protein CMM_1191 [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
 gi|147830301|emb|CAN01235.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
          michiganensis NCPPB 382]
          Length = 291

 Score = 71.4 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  S+ +G  +   ++ + AA    A+A+TD ++     + S  A   GI  + G 
Sbjct: 11 LHTHS--SVSDGTETPVELVAQAAAQGLSAVALTDHDSTAGWGDASAAALVQGITLVPGM 68

Query: 74 QLD 76
          ++ 
Sbjct: 69 EMS 71


>gi|240146868|ref|ZP_04745469.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Roseburia
          intestinalis L1-82]
 gi|257200966|gb|EEU99250.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Roseburia
          intestinalis L1-82]
          Length = 188

 Score = 71.4 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VHS+ S  +G  +   ++ +       AIA+TD +      +    A  AGI+ I G 
Sbjct: 8  LHVHSTES--DGTFTPTEVIAEAKKAGLSAIALTDHDTATGIRKAMGAAKEAGIELIPGI 65

Query: 74 QLDIDM 79
          +L    
Sbjct: 66 ELSTAY 71


>gi|229844135|ref|ZP_04464276.1| fumarate hydratase [Haemophilus influenzae 6P18H1]
 gi|229813129|gb|EEP48817.1| fumarate hydratase [Haemophilus influenzae 6P18H1]
          Length = 274

 Score = 71.4 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + K      L  HS+ S  +G LS   ++ +  A     +A+ D + +    E    A  
Sbjct: 1   MTKKYD---LHCHSTAS--DGVLSPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKE 55

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            GI+ I G ++     +   +   G     T P +  L+ + +  +
Sbjct: 56  VGIELITGVEIS-TNWEGRGIHIVGLNFDKTHPKMTALLQSQKALR 100


>gi|293389959|ref|ZP_06634293.1| fumarate hydratase [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290950493|gb|EFE00612.1| fumarate hydratase [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 278

 Score = 71.4 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++ +        +A+TD + +   LE  Q+A  +GI+ I G 
Sbjct: 6  LHCHSTAS--DGVLSPTEVVLRAHEKGVNVLALTDHDTVAGVLEARQQAEKSGIRLINGV 63

Query: 74 QLDIDMQDN 82
          ++    ++ 
Sbjct: 64 EISTVWENR 72


>gi|220905008|ref|YP_002480320.1| PHP domain protein [Desulfovibrio desulfuricans subsp.
          desulfuricans str. ATCC 27774]
 gi|219869307|gb|ACL49642.1| PHP domain protein [Desulfovibrio desulfuricans subsp.
          desulfuricans str. ATCC 27774]
          Length = 286

 Score = 71.4 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+  S  +G  S   ++ K A     A+A+TD + L    E +      G++ I GC
Sbjct: 6  LHTHTRAS--DGTDSPAQLMAKAAEAGLKAVAVTDHDTLAGLDEAAAAGRELGVELIRGC 63

Query: 74 QLD 76
          ++ 
Sbjct: 64 EIS 66


>gi|254496474|ref|ZP_05109351.1| metal dependent phosphoesterase [Legionella drancourtii LLAP12]
 gi|254354330|gb|EET12988.1| metal dependent phosphoesterase [Legionella drancourtii LLAP12]
          Length = 274

 Score = 71.4 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS +S  +GALS   +++K    Q   +++TD + +    E  Q A    I+ I G 
Sbjct: 4  LHCHSYFS--DGALSPKELIEKAQQQQIDCLSLTDHDTVAGYPELLQAAAFTSIKIINGI 61

Query: 74 QLD 76
          +L 
Sbjct: 62 ELS 64


>gi|16273309|ref|NP_439553.1| hypothetical protein HI1400 [Haemophilus influenzae Rd KW20]
 gi|260580764|ref|ZP_05848590.1| trpH protein [Haemophilus influenzae RdAW]
 gi|1175777|sp|P44176|TRPH_HAEIN RecName: Full=Protein trpH
 gi|1574235|gb|AAC23046.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|260092581|gb|EEW76518.1| trpH protein [Haemophilus influenzae RdAW]
          Length = 274

 Score = 71.4 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + K      L  HS+ S  +G LS   ++ +  A     +A+ D + +    E    A  
Sbjct: 1   MTKKYD---LHCHSTAS--DGVLSPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKE 55

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            GI+ I G ++     +   +   G     T P +  L+ + +  +
Sbjct: 56  VGIELITGVEIS-TNWEGRGIHIVGLNFDKTHPKMTALLQSQKALR 100


>gi|319776316|ref|YP_004138804.1| hypothetical protein HICON_17170 [Haemophilus influenzae F3047]
 gi|329123466|ref|ZP_08252030.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Haemophilus
           aegyptius ATCC 11116]
 gi|317450907|emb|CBY87133.1| conserved hypothetical protein [Haemophilus influenzae F3047]
 gi|327471048|gb|EGF16503.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Haemophilus
           aegyptius ATCC 11116]
          Length = 274

 Score = 71.4 bits (173), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + K      L  HS+ S  +G LS   ++ +  A     +A+ D + +    E    A  
Sbjct: 1   MTKKYD---LHCHSTAS--DGVLSPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKE 55

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            GI+ I G ++     +   +   G     T P +  L+ + +  +
Sbjct: 56  VGIELITGVEIS-TNWEGRGIHIVGLNFDKTHPKMTALLQSQKALR 100


>gi|312796988|ref|YP_004029910.1| DNA polymerase III alpha subunit [Burkholderia rhizoxinica HKI 454]
 gi|312168763|emb|CBW75766.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Burkholderia
            rhizoxinica HKI 454]
          Length = 100

 Score = 71.4 bits (173), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                 G   R   +V  +Q+  T KG  + +VT  + +       +P
Sbjct: 2    QRYRDGQLARACGLVTVRQRPGTAKG--VLFVTLEDESGYTNVIIWP 46


>gi|148825941|ref|YP_001290694.1| fumarate hydratase [Haemophilus influenzae PittEE]
 gi|148716101|gb|ABQ98311.1| fumarate hydratase [Haemophilus influenzae PittEE]
          Length = 274

 Score = 71.4 bits (173), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 3/97 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++ +  A     +A+ D + +    E    A   GI+ I G 
Sbjct: 7   LHCHSTAS--DGVLSPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKEVGIELITGV 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
           ++     +   +   G     T P +  L+ + +  +
Sbjct: 65  EIS-TNWEGRGIHIVGLNFDKTHPKMTALLQSQKALR 100


>gi|260583026|ref|ZP_05850808.1| fumarate hydratase [Haemophilus influenzae NT127]
 gi|260093877|gb|EEW77783.1| fumarate hydratase [Haemophilus influenzae NT127]
          Length = 274

 Score = 71.0 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 3/97 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++ +  A     +A+ D + +    E    A   GI+ I G 
Sbjct: 7   LHCHSTAS--DGVLSPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKEVGIELITGV 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
           ++     +   +   G     T P +  L+ + +  +
Sbjct: 65  EIS-TNWEGRGIHIVGLNFDKTHPKMTALLQSQKALR 100


>gi|167822589|ref|ZP_02454060.1| error-prone DNA polymerase [Burkholderia pseudomallei 9]
          Length = 103

 Score = 71.0 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 2/51 (3%)

Query: 983  YEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                     G   R   +V ++Q   T KG  + +VT  +          P
Sbjct: 1    AAALRDRRNGRLARACGLVTARQMPGTAKG--VLFVTLEDETGCVNVIVRP 49


>gi|145636112|ref|ZP_01791782.1| fumarate hydratase [Haemophilus influenzae PittHH]
 gi|145270634|gb|EDK10567.1| fumarate hydratase [Haemophilus influenzae PittHH]
          Length = 274

 Score = 71.0 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + K      L  HS+ S  +G LS   ++ +  A     +A+ D + +    E    A  
Sbjct: 1   MTKKYD---LHCHSTAS--DGVLSPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKE 55

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            GI+ I G ++     +   +   G     T P +  L+ + +  +
Sbjct: 56  VGIELITGVEIS-TNWEGRGIHIVGLNFDKTHPKMTALLQSQKALR 100


>gi|226313604|ref|YP_002773498.1| hypothetical protein BBR47_40170 [Brevibacillus brevis NBRC
          100599]
 gi|226096552|dbj|BAH44994.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 281

 Score = 71.0 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+  S  +G       +         A+AITD + +    E  + A A G++ I G 
Sbjct: 7  LHTHTKAS--DGTCEPAENVRLAKEAGLAALAITDHDTVAGIPEAMEAARALGVEIIPGV 64

Query: 74 QLD 76
          ++ 
Sbjct: 65 EVS 67


>gi|260575479|ref|ZP_05843478.1| nucleic acid binding OB-fold tRNA/helicase-type [Rhodobacter sp. SW2]
 gi|259022399|gb|EEW25696.1| nucleic acid binding OB-fold tRNA/helicase-type [Rhodobacter sp. SW2]
          Length = 126

 Score = 71.0 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                +        G  + +A +V+ +Q+  T KG  + ++T  +         +
Sbjct: 19   AALPHIRLDEPPVGARVCVAGLVLVRQRPGTAKG--VIFLTLEDETAVCNVVVW 70


>gi|148826883|ref|YP_001291636.1| fumarate hydratase [Haemophilus influenzae PittGG]
 gi|148718125|gb|ABQ99252.1| fumarate hydratase [Haemophilus influenzae PittGG]
          Length = 274

 Score = 71.0 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + K      L  HS+ S  +G LS   ++ +  A     +A+ D + +    E    A  
Sbjct: 1   MTKKYD---LHCHSTAS--DGVLSPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKE 55

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            GI+ I G ++     +   +   G     T P +  L+ + +  +
Sbjct: 56  VGIELITGVEIS-TNWEGRGIHIVGLNFDKTHPKMTALLQSQKALR 100


>gi|229846743|ref|ZP_04466850.1| fumarate hydratase [Haemophilus influenzae 7P49H1]
 gi|229810232|gb|EEP45951.1| fumarate hydratase [Haemophilus influenzae 7P49H1]
          Length = 264

 Score = 71.0 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 3/97 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++ +  A     +A+ D + +    E    A   GI+ I G 
Sbjct: 7   LHCHSTAS--DGVLSPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKEVGIELITGV 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
           ++     +   +   G     T P +  L+ + +  +
Sbjct: 65  EIS-TNWEGRGIHIVGLNFDKTHPKMTALLQSQKALR 100


>gi|269793135|ref|YP_003318039.1| PHP domain-containing protein [Thermanaerovibrio acidaminovorans
          DSM 6589]
 gi|269100770|gb|ACZ19757.1| PHP domain protein [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 274

 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS++S  +G L+ + ++          +A+TD + +    EF     + GI+ I G 
Sbjct: 6  LHLHSTFS--DGTLTPHELVRLGRRLGLSVMALTDHDTMEGNEEFLAACASQGIKGIPGV 63

Query: 74 QLD 76
          ++ 
Sbjct: 64 EVS 66


>gi|23464715|ref|NP_695318.1| hypothetical protein BL0089 [Bifidobacterium longum NCC2705]
 gi|227546824|ref|ZP_03976873.1| PHP family metal-dependent phosphoesterase [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|312132410|ref|YP_003999749.1| metal-dependent phosphoesterse [Bifidobacterium longum subsp.
           longum BBMN68]
 gi|23325281|gb|AAN23954.1| conserved hypothetical protein with phosphoesterase domain
           [Bifidobacterium longum NCC2705]
 gi|227212786|gb|EEI80667.1| PHP family metal-dependent phosphoesterase [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|311772786|gb|ADQ02274.1| Putative metal-dependent phosphoesterse [Bifidobacterium longum
           subsp. longum BBMN68]
          Length = 297

 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 78/249 (31%), Gaps = 66/249 (26%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H+++S  +G  +   + ++  A     +AI+D +      E    A   G+  + G +
Sbjct: 21  HCHTAFS--DGTETPATLAEQSKALGLKGVAISDHDTTAGWPEAEAAAHRVGLPLLRGTE 78

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEGY----QRLIELVSR----------M 119
           +     +N+ +   G    PT   I  L  +T        QR++EL+SR           
Sbjct: 79  IT-ATDENVSVHMLGYQYDPTNQHITDLFANTRAARLQRTQRMVELLSRDYPITWQSVLA 137

Query: 120 YLLDQGK---QSVRICLSWLQE------------------------------------IG 140
            + +  K       I  + +                                       G
Sbjct: 138 QVKEGSKTTIGRPHIADALVSAGVYRTRSEAFADAVSASSKYYIPTPSPTSHEVVAAVKG 197

Query: 141 TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV 200
             G+I++    +G + R     S    E  +            + +  HRG    +  ++
Sbjct: 198 AGGVILI--AHAGDVSRNRRLLSDDQIEALISEGLDG------LEV-WHRGNSPEQRERL 248

Query: 201 VQLAYTHEL 209
           + +   H+L
Sbjct: 249 LTICRRHQL 257


>gi|225159092|ref|ZP_03725399.1| DNA polymerase III, alpha subunit [Opitutaceae bacterium TAV2]
 gi|224802298|gb|EEG20563.1| DNA polymerase III, alpha subunit [Opitutaceae bacterium TAV2]
          Length = 229

 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 945  VENSSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
                + + + E+ +LGFY SGHPL+ Y  +L  +      E +        R+  +  + 
Sbjct: 1    DFTQNEKLQFEKELLGFYVSGHPLNDYDGLLEAIDSHFIHELLEQPDRTPFRIGGIAGTI 60

Query: 1005 QQKKTRK-GSRIGWVTF 1020
             +K ++K        + 
Sbjct: 61   AKKLSKKDNRPWAAFSL 77


>gi|312792991|ref|YP_004025914.1| PHP domain-containing protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312180131|gb|ADQ40301.1| PHP domain protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 279

 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH+++S  +G L+   ++         AIAITD +     +    +    GI+ + G 
Sbjct: 4  LHVHTTFS--DGTLTPQEVIKLAKEKGLFAIAITDHDTTDGVIHAIDEGNRLGIKVVSGV 61

Query: 74 QLDIDMQ 80
          ++  D +
Sbjct: 62 EISADFE 68


>gi|291536057|emb|CBL09169.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Roseburia intestinalis M50/1]
          Length = 289

 Score = 70.6 bits (171), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VHS+ S  +G  +   ++ +       AIA+TD +      +    A  AGI+ I G 
Sbjct: 8  LHVHSTES--DGTFTPTEVIAEAKNAGLSAIALTDHDTATGIRKAMGAAKEAGIELIPGI 65

Query: 74 QLDIDM 79
          +L    
Sbjct: 66 ELSTAY 71


>gi|255022093|ref|ZP_05294097.1| PHP domain protein [Acidithiobacillus caldus ATCC 51756]
 gi|254968451|gb|EET26009.1| PHP domain protein [Acidithiobacillus caldus ATCC 51756]
          Length = 279

 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 57/175 (32%), Gaps = 44/175 (25%)

Query: 17  HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
           HS++S  +G+LS+  ++ ++A      +A+TD +N       +++A   G++ I G ++ 
Sbjct: 2   HSTFS--DGSLSVPELVARVADTGVEVMALTDHDNTAGVEMAAREAKRHGLRLISGVEI- 58

Query: 77  IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE------GYQRLIELVSRMYLLDQGKQSVR 130
                                 IV L           G +R++ L               
Sbjct: 59  ------------SSVWEEQGIHIVGLAMDIAHPALQGGLERIVRL------------RDE 94

Query: 131 ICLSWLQEIGTEGL---------IMLTG--GSSGPIDRAFFFNSSQVAEKRLLTF 174
             L   + +  +GL         I  +   G +            Q  ++    +
Sbjct: 95  RALEIARRLHGQGLAGAREGARAIAGSPLVGRAHFAQWLVQAGHCQDTQEAFQRY 149


>gi|289673970|ref|ZP_06494860.1| error-prone DNA polymerase [Pseudomonas syringae pv. syringae FF5]
          Length = 94

 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 12/97 (12%)

Query: 814 IQIMPPSVNTPCVDFKVG---------DNRIYYSLAAIKGVGTTTARHIMEASADKPFDS 864
           ++I P  V     D  +          +  I   L  ++      A  I  A A +PF  
Sbjct: 1   MEIRPVDVRYSDWDCSLEPLDHPDRTRNLAIRLGLRMVRSFREEDALRIEAARAKRPFVD 60

Query: 865 LEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQL 901
             D   R +   L+ R  E+L  +GAL      R + 
Sbjct: 61  ATDLTLRAE---LDSRAAEALADSGALRGLIGHRPRA 94


>gi|311743778|ref|ZP_07717584.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Aeromicrobium marinum DSM 15272]
 gi|311312908|gb|EFQ82819.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Aeromicrobium marinum DSM 15272]
          Length = 274

 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  S   +++  AA     +A+TD ++     E    A  AGI+ + G 
Sbjct: 5  LHTHSNRS--DGTDSPTELVEHAAAAGLSVVALTDHDSTAGWDEAQAAADRAGIRLVPGI 62

Query: 74 QLDIDMQD 81
          ++   ++ 
Sbjct: 63 EVSCRLEH 70


>gi|145219306|ref|YP_001130015.1| phosphotransferase domain-containing protein [Prosthecochloris
          vibrioformis DSM 265]
 gi|145205470|gb|ABP36513.1| PHP C-terminal domain protein [Chlorobium phaeovibrioides DSM
          265]
          Length = 286

 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G  S   I++K AA    AI+ITD +++    +    A   GI+ I G 
Sbjct: 18 LHIHTKCS--DGLFSPEEIVEKAAAAGLKAISITDHDSVAGIDKAKPSAIEKGIELITGA 75

Query: 74 QLD 76
          ++ 
Sbjct: 76 EMS 78


>gi|323701912|ref|ZP_08113582.1| PHP domain protein [Desulfotomaculum nigrificans DSM 574]
 gi|323533216|gb|EGB23085.1| PHP domain protein [Desulfotomaculum nigrificans DSM 574]
          Length = 284

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H++ S  +G+     I+ K       AIA++D + +    E  + A    I+ + G 
Sbjct: 5   LHIHTTAS--DGSDRPEEIVRKALRLGLGAIAVSDHDTMAGVTEAQRAAKDFKIEVLPGI 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS 104
           +++   Q                   + L  
Sbjct: 63  EINTYFQGREIHVLGYLIDPKNQ---LFLAK 90


>gi|307636175|gb|ADN78780.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 131

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 67/128 (52%), Positives = 82/128 (64%), Gaps = 3/128 (2%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +            E+ L  K+  GLE RL         +     +Y +RL  EL+VI +
Sbjct: 4   EYFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQ 63

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 64  MGFPGYFLIVMEFIQWSKDNYIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 123

Query: 411 DRMSMPDF 418
           +R+SMPDF
Sbjct: 124 ERVSMPDF 131


>gi|260914029|ref|ZP_05920502.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Pasteurella dagmatis ATCC 43325]
 gi|260631662|gb|EEX49840.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Pasteurella dagmatis ATCC 43325]
          Length = 277

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS  +++++ A      +A+TD + +    E  Q A   GIQ I G 
Sbjct: 7  LHCHSTAS--DGVLSPTDVVNRAAEKGVNVLALTDHDTVSGLAEAKQAANQQGIQLINGV 64

Query: 74 QLDIDMQDN 82
          ++    ++ 
Sbjct: 65 EISTYWENR 73


>gi|326203828|ref|ZP_08193690.1| PHP domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325985926|gb|EGD46760.1| PHP domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 285

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 80/230 (34%), Gaps = 35/230 (15%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +E    F+ L  HS+ S  +G++S   ++         A+A+TD + +    E  ++   
Sbjct: 1   MEN---FIDLHTHSTAS--DGSMSPAELVRHAKERGLAAVALTDHDTVDGTQEAIKEGKR 55

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL-IELVSRMYLLD 123
           +G++ I G ++ +  +  + +                       Y  +  EL +     +
Sbjct: 56  SGVEVIPGIEISVRYKPEMHILGLFPEGDS--------------YLNIRSELSTVKKGRE 101

Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT-FKKLFGDRL 182
              + +   L+ L        I +T      +          +A   +   + K   +  
Sbjct: 102 DRNKKIINRLNELG-------IEITEDEVKDVAMGDITGRPHIARVLVAKGYVKTIDEAF 154

Query: 183 --YV---NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
             Y+    L   + ++      +  +  +  +P++A  + +FL +   E 
Sbjct: 155 DIYLCKEGLAYFQRFELEPADGIKAIRKSGGVPVIA--HPVFLRKSYDEM 202


>gi|225572724|ref|ZP_03781479.1| hypothetical protein RUMHYD_00913 [Blautia hydrogenotrophica DSM
          10507]
 gi|225039897|gb|EEG50143.1| hypothetical protein RUMHYD_00913 [Blautia hydrogenotrophica DSM
          10507]
          Length = 278

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VHS+YS  +G  +   ++         A A+TD +        ++ A   G++ I G 
Sbjct: 7  LHVHSNYS--DGTYTPQELVRIALEKGLRAFALTDHDTTEGIPLAAEAARGTGLEVIPGI 64

Query: 74 QLDIDMQDN 82
          +     Q  
Sbjct: 65 EFSTSYQGK 73


>gi|325295170|ref|YP_004281684.1| PHP domain protein [Desulfurobacterium thermolithotrophum DSM
          11699]
 gi|325065618|gb|ADY73625.1| PHP domain protein [Desulfurobacterium thermolithotrophum DSM
          11699]
          Length = 277

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G+LS   +++K        +++TD + +    E  ++    GI+ I G 
Sbjct: 11 LHCHSTAS--DGSLSPKKLVEKAKNIGISILSVTDHDTVSGVSEAVEEGKKLGIKVIPGI 68

Query: 74 QLD 76
          ++ 
Sbjct: 69 EVT 71


>gi|325274082|ref|ZP_08140225.1| phosphotransferase domain-containing protein [Pseudomonas sp.
           TJI-51]
 gi|324100782|gb|EGB98485.1| phosphotransferase domain-containing protein [Pseudomonas sp.
           TJI-51]
          Length = 285

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +GALS   ++ +        +A+TD + L    E        G++ + G 
Sbjct: 5   LHCHSTAS--DGALSPTALVARAHEHGVQTLALTDHDTLEGLPEARLACVERGMRWVSGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           +L                P    P   LL 
Sbjct: 63  ELSCTWGGATIHVLGYDFPLDAPP---LLA 89


>gi|307636097|gb|ADN78741.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636099|gb|ADN78742.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636101|gb|ADN78743.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636103|gb|ADN78744.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636105|gb|ADN78745.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636107|gb|ADN78746.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636109|gb|ADN78747.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636111|gb|ADN78748.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636113|gb|ADN78749.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636115|gb|ADN78750.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 131

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 68/128 (53%), Positives = 83/128 (64%), Gaps = 3/128 (2%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +            E+ L  K+  GLE RL         +     +Y +RL  ELNVI +
Sbjct: 4   EYFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELNVINQ 63

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 64  MGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 123

Query: 411 DRMSMPDF 418
           +R+SMPDF
Sbjct: 124 ERVSMPDF 131


>gi|312127087|ref|YP_003991961.1| PHP domain-containing protein [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311777106|gb|ADQ06592.1| PHP domain protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 279

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH+++S  +G L+   ++         AIAITD +     +    +    G++ + G 
Sbjct: 4  LHVHTTFS--DGTLTPQEVVKLAKEKGLFAIAITDHDTTDGVIHAIDEGNRLGLKVVSGV 61

Query: 74 QLDIDMQ 80
          ++  D +
Sbjct: 62 EISADFE 68


>gi|307636011|gb|ADN78698.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636013|gb|ADN78699.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636015|gb|ADN78700.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636017|gb|ADN78701.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636019|gb|ADN78702.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636181|gb|ADN78783.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 131

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 67/128 (52%), Positives = 83/128 (64%), Gaps = 3/128 (2%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +            E+ L  K+  GLE RL         +     +Y +RL  EL+VI +
Sbjct: 4   EYFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQIELDVINQ 63

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 64  MGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 123

Query: 411 DRMSMPDF 418
           +R+SMPDF
Sbjct: 124 ERVSMPDF 131


>gi|167717946|ref|ZP_02401182.1| error-prone DNA polymerase [Burkholderia pseudomallei DM98]
          Length = 101

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 2/48 (4%)

Query: 986  SVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                  G   R   +V ++Q   T KG  + +VT  +          P
Sbjct: 2    LRDRRNGRLARACGLVTARQMPGTAKG--VLFVTLEDETGCVNVIVRP 47


>gi|307636021|gb|ADN78703.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636023|gb|ADN78704.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636025|gb|ADN78705.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636027|gb|ADN78706.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae O395]
 gi|307636029|gb|ADN78707.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636031|gb|ADN78708.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636033|gb|ADN78709.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636035|gb|ADN78710.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae C6706]
 gi|307636037|gb|ADN78711.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636039|gb|ADN78712.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636041|gb|ADN78713.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636043|gb|ADN78714.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636045|gb|ADN78715.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636047|gb|ADN78716.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636049|gb|ADN78717.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636051|gb|ADN78718.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636053|gb|ADN78719.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636055|gb|ADN78720.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636057|gb|ADN78721.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636059|gb|ADN78722.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636061|gb|ADN78723.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636063|gb|ADN78724.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636065|gb|ADN78725.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636067|gb|ADN78726.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636069|gb|ADN78727.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636071|gb|ADN78728.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636073|gb|ADN78729.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636075|gb|ADN78730.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636077|gb|ADN78731.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636079|gb|ADN78732.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636081|gb|ADN78733.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636083|gb|ADN78734.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636085|gb|ADN78735.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636087|gb|ADN78736.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636089|gb|ADN78737.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636091|gb|ADN78738.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636093|gb|ADN78739.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636095|gb|ADN78740.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636117|gb|ADN78751.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636119|gb|ADN78752.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636121|gb|ADN78753.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636123|gb|ADN78754.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636125|gb|ADN78755.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636127|gb|ADN78756.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636129|gb|ADN78757.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636131|gb|ADN78758.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636133|gb|ADN78759.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636135|gb|ADN78760.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636137|gb|ADN78761.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636139|gb|ADN78762.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636141|gb|ADN78763.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636143|gb|ADN78764.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636145|gb|ADN78765.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636147|gb|ADN78766.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636151|gb|ADN78768.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636153|gb|ADN78769.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636155|gb|ADN78770.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636157|gb|ADN78771.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636159|gb|ADN78772.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636161|gb|ADN78773.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636163|gb|ADN78774.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636165|gb|ADN78775.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636167|gb|ADN78776.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636169|gb|ADN78777.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636171|gb|ADN78778.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636173|gb|ADN78779.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636177|gb|ADN78781.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636179|gb|ADN78782.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 131

 Score = 69.8 bits (169), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 67/128 (52%), Positives = 83/128 (64%), Gaps = 3/128 (2%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +            E+ L  K+  GLE RL         +     +Y +RL  EL+VI +
Sbjct: 4   EYFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQ 63

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 64  MGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 123

Query: 411 DRMSMPDF 418
           +R+SMPDF
Sbjct: 124 ERVSMPDF 131


>gi|307636005|gb|ADN78695.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636007|gb|ADN78696.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636009|gb|ADN78697.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636149|gb|ADN78767.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 131

 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 67/128 (52%), Positives = 83/128 (64%), Gaps = 3/128 (2%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +            E+ L  K+  GLE RL         +     +Y +RL  EL+VI +
Sbjct: 4   EYFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPDVRAKRRPEYDERLQVELDVINQ 63

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 64  MGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 123

Query: 411 DRMSMPDF 418
           +R+SMPDF
Sbjct: 124 ERVSMPDF 131


>gi|309390073|gb|ADO77953.1| PHP domain protein [Halanaerobium praevalens DSM 2228]
          Length = 295

 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H++ S  +GA +   ++D         IA+TD +NL S  E    A   G++ I G 
Sbjct: 16 LHMHTTAS--DGASTPAELVDTCLELGLETIAVTDHDNLNSVKETQALASKKGLKVIPGI 73

Query: 74 QLD 76
          ++ 
Sbjct: 74 EIS 76


>gi|239626665|ref|ZP_04669696.1| PHP domain-containing protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239516811|gb|EEQ56677.1| PHP domain-containing protein [Clostridiales bacterium 1_7_47FAA]
          Length = 287

 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           +V L VHS+ S  +G  +   ++   A     AIA+TD +      E      A G++ 
Sbjct: 10 DYVDLHVHSNAS--DGTCTPAEVVGLAAQADLRAIALTDHDTTAGIPEALLAGAACGMEV 67

Query: 70 IIGCQLD 76
          I G ++ 
Sbjct: 68 IPGIEVS 74


>gi|301170154|emb|CBW29758.1| conserved protein [Haemophilus influenzae 10810]
          Length = 274

 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 6/106 (5%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + K      L  HS+ S  +G LS   +  +  A     +A+ D + +    E    A  
Sbjct: 1   MTKKYD---LHCHSTAS--DGVLSPTELAHRAYAQGVNVLALCDHDTIAGIDEAEIAAKE 55

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            GI+ I G ++     +   +   G     T P +  L+ + +  +
Sbjct: 56  VGIELITGVEIS-TNWEGRGIHIVGLNFDKTHPKMTALLQSQKALR 100


>gi|210608496|ref|ZP_03287872.1| hypothetical protein CLONEX_00051 [Clostridium nexile DSM 1787]
 gi|210153020|gb|EEA84026.1| hypothetical protein CLONEX_00051 [Clostridium nexile DSM 1787]
          Length = 377

 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 67/373 (17%), Positives = 137/373 (36%), Gaps = 44/373 (11%)

Query: 558 FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKG 616
                     L+K D LG    T+++   + + Q  G     + IP DD     L     
Sbjct: 1   HFDYHSIDHNLLKLDILGHDDPTIIKMLEELVEQLTGKPFKATDIPLDDQGVMKLFRDTS 60

Query: 617 TLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
           +LGI   +  G      G+     + +I +V   +P  + +++  +   +G +  ++   
Sbjct: 61  SLGITPDDIGGCPVGCLGIPEFGTDFVIQMVVDTKPKTLSDLIRISGLSHGTDVWLNNAQ 120

Query: 677 LIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKK-IKEEMDKQKERFISG 735
            +    K T    I     +    +  G    E+  +   + K  + +   K    F   
Sbjct: 121 ELIKSGKATISTAICTRDDIMTYLINKGMDSEESFTIMERVRKGLVAKGKCKDWPEFKKD 180

Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
             ++GI      +  ++      Y F K+HAAAY +++++ A+ K +YP+ + AA  ++ 
Sbjct: 181 MIEHGIPDWYIWSCEKI-----KYMFPKAHAAAYVMMAFRIAYCKVYYPLAYYAAYFSIR 235

Query: 796 MDNVEK---------------------------------IKKFCQDARQFNIQIMPPSVN 822
                                                    K  Q+      + +P  + 
Sbjct: 236 ASAFSYELMCQGKEKLEFYMNDYKRRSDSLSKKEQDTLKDMKIVQEMYARGFEFLPLDIY 295

Query: 823 TPCV-DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
                 F++ D ++   L++I+G+G   A  +  A+AD P+ S +DF  R    K+++ V
Sbjct: 296 RAKATKFQIIDGKLMPPLSSIEGMGDKAADAVEMAAADGPYLSKDDFRQRT---KVSKTV 352

Query: 882 LESLVFAGALDCF 894
           ++ +   G     
Sbjct: 353 IDFMADLGMFGDL 365


>gi|325268070|ref|ZP_08134716.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Kingella
           denitrificans ATCC 33394]
 gi|324980455|gb|EGC16121.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Kingella
           denitrificans ATCC 33394]
          Length = 278

 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS   + +GAL    ++   A +    +A+TD ++          A    I+ I G 
Sbjct: 4   LHCHSH--ISDGALPPEEVVALAAKNGCTMLALTDHDHTGGLAAARSAAQQHNIRFINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           ++ +  +                    LL    +G
Sbjct: 62  EISVTWRGRTIHMVGLDFDEHESSLQSLLAQLRQG 96


>gi|307636183|gb|ADN78784.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636185|gb|ADN78785.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636187|gb|ADN78786.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636189|gb|ADN78787.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 131

 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 67/128 (52%), Positives = 82/128 (64%), Gaps = 3/128 (2%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +            E+ L  K+  GLE RL         +     +Y  RL  EL+VI +
Sbjct: 4   EYFLPNFPTGGMAIEDFLVMKSREGLEERLEFLFPDPEVRAKRRPEYDDRLQVELDVINQ 63

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 64  MGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 123

Query: 411 DRMSMPDF 418
           +R+SMPDF
Sbjct: 124 ERVSMPDF 131


>gi|325290313|ref|YP_004266494.1| PHP domain protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324965714|gb|ADY56493.1| PHP domain protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 284

 Score = 69.0 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H++ S  +G +    ++   A     A+AITD + +    E  + A    I  I G 
Sbjct: 14 LHCHTNMS--DGLMDPAEVVRIAAQKGLSALAITDHDTIQGFAEGKKAALQYNIDFIPGI 71

Query: 74 QLDIDMQDN 82
          +++ D    
Sbjct: 72 EINTDWCGR 80


>gi|288941909|ref|YP_003444149.1| PHP domain-containing protein [Allochromatium vinosum DSM 180]
 gi|288897281|gb|ADC63117.1| PHP domain protein [Allochromatium vinosum DSM 180]
          Length = 286

 Score = 69.0 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 55/159 (34%), Gaps = 29/159 (18%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +   P    L  HS+ S  +G L+   ++ +  A     +A+TD +N     E  + A  
Sbjct: 1   MPPIPD---LHTHSTAS--DGTLTPTELVVRAGAAGVQVLALTDHDNTDGLAEAGRAADD 55

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
            G+  I G ++ +   + L +   G    P    +        G  RL+E   R +  ++
Sbjct: 56  LGLTLIPGVEISVTW-NTLTVHVVGLRLDPANSDL------QAGLARLMEF--RAWRAEE 106

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNS 163
             +        L + G E        +     RA     
Sbjct: 107 IGRR-------LAKHGIED-----ACAG---ARALAKGR 130


>gi|225375381|ref|ZP_03752602.1| hypothetical protein ROSEINA2194_01006 [Roseburia inulinivorans
          DSM 16841]
 gi|225212870|gb|EEG95224.1| hypothetical protein ROSEINA2194_01006 [Roseburia inulinivorans
          DSM 16841]
          Length = 281

 Score = 69.0 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VHS+ S  +G L+  +++ +       A A+TD +      +    A +AGI+ I G 
Sbjct: 8  LHVHSTES--DGTLTPEDLVAEAKKVGLAAFALTDHDTCQGVGKAMPCAASAGIELIPGI 65

Query: 74 QLDIDMQDN 82
          +L  D    
Sbjct: 66 ELSTDYHGK 74


>gi|307636195|gb|ADN78790.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 131

 Score = 69.0 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 67/128 (52%), Positives = 83/128 (64%), Gaps = 3/128 (2%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +            E+ L  K+  GLE RL         +     +Y +RL  EL+VI +
Sbjct: 4   EYFLPNFPTEGMAIEDFLVMKSREGLEERLEFLFPDPEVRAQRRPEYDERLQIELDVINQ 63

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 64  MGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 123

Query: 411 DRMSMPDF 418
           +R+SMPDF
Sbjct: 124 ERVSMPDF 131


>gi|253700534|ref|YP_003021723.1| PHP domain protein [Geobacter sp. M21]
 gi|251775384|gb|ACT17965.1| PHP domain protein [Geobacter sp. M21]
          Length = 293

 Score = 69.0 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS+YS  +G  +   ++   A     AIA+ D + +    E      A G++ +   
Sbjct: 7   LHLHSTYS--DGVRTPAELVAMAAELGLKAIALADHDTVDGVDEAIAAGSAKGVEVLPAM 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS 104
           +  +       +   G       P   LL  
Sbjct: 65  EFSVAFGSYRDVHLLGYLLDHHDPQ--LLAM 93


>gi|197118692|ref|YP_002139119.1| metal-dependent phosphoesterase [Geobacter bemidjiensis Bem]
 gi|197088052|gb|ACH39323.1| metal-dependent phosphoesterase, PHP family [Geobacter bemidjiensis
           Bem]
          Length = 285

 Score = 69.0 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 2/92 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS+YS  +G  +   ++   A     AIA+ D + +    E      A G++ +   
Sbjct: 7   LHLHSTYS--DGVRTPAELVAMAAELGLKAIALADHDTVDGIDEAMAAGSAQGVEVLPAI 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           +  +       +   G       P ++ ++  
Sbjct: 65  EFSVAFGSYRDVHLLGYLLDHRDPQLLAILKD 96


>gi|213691666|ref|YP_002322252.1| PHP C-terminal domain protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523127|gb|ACJ51874.1| PHP C-terminal domain protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457757|dbj|BAJ68378.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 297

 Score = 69.0 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 77/249 (30%), Gaps = 66/249 (26%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H+ +S  +G  +   + ++  A     +AI+D +      E    A   G+  + G +
Sbjct: 21  HCHTVFS--DGTETPVTLAEQSKALGLKGVAISDHDTTAGWPEAEAAAHRVGLPLLRGTE 78

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEGY----QRLIELVSR----------M 119
           +     +N+ +   G    PT   I  L   T        QR++EL+SR           
Sbjct: 79  IT-ATDENVSVHMLGYQYDPTNQHITDLFADTRAARLQRTQRMVELLSRDYPITWQSVLA 137

Query: 120 YLLDQGK---QSVRICLSWLQE------------------------------------IG 140
            + + GK       I  + +                                       G
Sbjct: 138 QVKEGGKTTIGRPHIADALVSAGVYRTRSEAFADAVSASSKYYIPTPSPTSHEVVSAVKG 197

Query: 141 TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV 200
             G+I++    +G + R     S    E  +            + +  HRG    +  ++
Sbjct: 198 AGGVILI--AHAGDVSRNRRLLSDDQIEALISEGLDG------LEV-WHRGNSPEQRERL 248

Query: 201 VQLAYTHEL 209
           + +   H+L
Sbjct: 249 LTICRRHQL 257


>gi|18397349|ref|NP_565360.1| PHP domain-containing protein [Arabidopsis thaliana]
 gi|20197611|gb|AAD15431.2| expressed protein [Arabidopsis thaliana]
 gi|20197796|gb|AAM15252.1| expressed protein [Arabidopsis thaliana]
 gi|330251170|gb|AEC06264.1| Polymerase/histidinol phosphatase-like protein [Arabidopsis
           thaliana]
          Length = 434

 Score = 69.0 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  HS+ S  +G LS + ++++   +    +++TD + +    E  +     GI+ I G
Sbjct: 70  ELHSHSNRS--DGFLSPSKVVERAYNNGVKVLSLTDHDTMAGVPEAVEAGRRFGIKIIPG 127

Query: 73  CQLD 76
            ++ 
Sbjct: 128 IEIS 131


>gi|15450377|gb|AAK96482.1| At2g13860/F13J11.19 [Arabidopsis thaliana]
 gi|20466107|gb|AAM19975.1| At2g13860/F13J11.19 [Arabidopsis thaliana]
          Length = 433

 Score = 69.0 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
            L  HS+ S  +G LS + ++++   +    +++TD + +    E  +     GI+ I G
Sbjct: 69  ELHSHSNRS--DGFLSPSKVVERAYNNGVKVLSLTDHDTMAGVPEAVEAGRRFGIKIIPG 126

Query: 73  CQLD 76
            ++ 
Sbjct: 127 IEIS 130


>gi|254421521|ref|ZP_05035239.1| hypothetical protein S7335_1671 [Synechococcus sp. PCC 7335]
 gi|196189010|gb|EDX83974.1| hypothetical protein S7335_1671 [Synechococcus sp. PCC 7335]
          Length = 278

 Score = 69.0 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           L  H++ S  +G+L+   +++  A     A+AITD + +   +E ++ A    ++ + G
Sbjct: 3  ELHSHTTCS--DGSLTPTELVNFAAEQGVKALAITDHDTMAGWVEATEAARPFDLEIVPG 60

Query: 73 CQLDIDMQDN 82
           +L       
Sbjct: 61 LELSTVYNGR 70


>gi|120554796|ref|YP_959147.1| phosphotransferase domain-containing protein [Marinobacter
           aquaeolei VT8]
 gi|120324645|gb|ABM18960.1| PHP C-terminal domain protein [Marinobacter aquaeolei VT8]
          Length = 288

 Score = 68.7 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 18/114 (15%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ-KACAAGIQPIIG 72
           L  HS+ S  +GALS   ++ +        +A+TD + +   LE ++  A  +G+  I G
Sbjct: 13  LHCHSTAS--DGALSPEALVARAVEQGVSHLALTDHDTIAG-LEVARSAASGSGLSLING 69

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV----STAEGYQ-------RLIEL 115
            +L    + +                   L          +Q       RL  L
Sbjct: 70  VELSCVWRSHTIHVVGLDFDERDPA---FLAALERQNENRWQRARMIADRLSRL 120


>gi|150016290|ref|YP_001308544.1| phosphotransferase domain-containing protein [Clostridium
          beijerinckii NCIMB 8052]
 gi|149902755|gb|ABR33588.1| PHP C-terminal domain protein [Clostridium beijerinckii NCIMB
          8052]
          Length = 279

 Score = 68.7 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
           VH+  S  +G LS   ++ +   +    +AITD + L    +  +++    I  I G +
Sbjct: 7  HVHT--SSSDGTLSPKEVVKRAHDNNVKYLAITDHDTLSGLDKAIEESLKYDITLIPGIE 64

Query: 75 LD 76
          L 
Sbjct: 65 LS 66


>gi|163733307|ref|ZP_02140750.1| DNA polymerase III alpha subunit, putative [Roseobacter litoralis Och
            149]
 gi|161393095|gb|EDQ17421.1| DNA polymerase III alpha subunit, putative [Roseobacter litoralis Och
            149]
          Length = 100

 Score = 68.7 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 990  IRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             +   + +A +V+ +Q+  T KG  + ++T  +         +
Sbjct: 5    PQNARVAVAGIVILRQRPGTAKG--VIFLTLEDETGVVNVIVW 45


>gi|307636191|gb|ADN78788.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
 gi|307636193|gb|ADN78789.1| DNA polymerase III holoenzyme alpha subunit [Vibrio cholerae]
          Length = 131

 Score = 68.7 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 67/128 (52%), Positives = 83/128 (64%), Gaps = 3/128 (2%)

Query: 294 RFIEKECDDIQKEEENELRNKAVAGLEVRLA---QGAIAKGYHAQDYRQRLDFELNVIAR 350
            +            E+ L  K+  GLE RL         +     +Y +RL  EL+VI +
Sbjct: 4   EYFLPNFPTEGMAIEDFLVMKSREGLEERLEFLFPNPEVRAQRRPEYDERLQIELDVINQ 63

Query: 351 MKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNP 410
           M F GYFLIV +FIQW+K N+IPVGPGRGSGAGS+ AYAL ITD+DPL + LLFERFLNP
Sbjct: 64  MGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNP 123

Query: 411 DRMSMPDF 418
           +R+SMPDF
Sbjct: 124 ERVSMPDF 131


>gi|330839224|ref|YP_004413804.1| PHP domain protein [Selenomonas sputigena ATCC 35185]
 gi|329746988|gb|AEC00345.1| PHP domain protein [Selenomonas sputigena ATCC 35185]
          Length = 276

 Score = 68.7 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQP 69
          L  H+SYS  +G ++   ++          IAITD + +       ++    A   GI  
Sbjct: 5  LHTHTSYS--DGKMTPEELVAAAKEAGLRYIAITDHDTVDGVTHLYEEGLLPAKGIGI-- 60

Query: 70 IIGCQLD 76
          I G +  
Sbjct: 61 IPGIEFS 67


>gi|317481617|ref|ZP_07940653.1| PHP domain-containing protein [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916977|gb|EFV38363.1| PHP domain-containing protein [Bifidobacterium sp. 12_1_47BFAA]
          Length = 297

 Score = 68.7 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 79/249 (31%), Gaps = 66/249 (26%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H+++S  +G  +   + ++  A     +AI+D +      E    A   G+  + G +
Sbjct: 21  HCHTAFS--DGTETPATLAEQSKALGLKGVAISDHDTTAGWPEAEAAAHRVGLPLLRGTE 78

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEGY----QRLIELVSR----------M 119
           +     +N+ +   G    PT   I  L  +T        QR++EL+SR           
Sbjct: 79  IT-ATDENVSVHMLGYQYDPTNQHIADLFANTRAARLQRTQRMVELLSRDYPITWQSVLA 137

Query: 120 YLLDQGK---QSVRICLSWLQE------------------------------------IG 140
            + + GK       I  + +                                       G
Sbjct: 138 QVKEGGKTTIGRPHIADALVSAGVYRTRSEAFADAVSASSKYYIPTPSPTSHEVVAAVKG 197

Query: 141 TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV 200
             G+I++    +G + R     S    E  +            + +  HRG    +  ++
Sbjct: 198 AGGVILI--AHAGDVSRNRRLLSDDQIEALISEGLDG------LEV-WHRGNSPEQRERL 248

Query: 201 VQLAYTHEL 209
           + +   H+L
Sbjct: 249 LTICRRHQL 257


>gi|302389766|ref|YP_003825587.1| PHP domain protein [Thermosediminibacter oceani DSM 16646]
 gi|302200394|gb|ADL07964.1| PHP domain protein [Thermosediminibacter oceani DSM 16646]
          Length = 268

 Score = 68.7 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 9/73 (12%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
          L +H+++S  +G L+   ++DK  +    AIAITD + +   +   ++A      P    
Sbjct: 5  LHLHTTFS--DGTLTPEQVVDKAFSLNLRAIAITDHDTVDGIVPAVERAKKY---PMLEV 59

Query: 70 IIGCQLDIDMQDN 82
          I G +++    + 
Sbjct: 60 IPGIEINTYYGEE 72


>gi|312602646|ref|YP_004022491.1| DNA polymerase III subunit alpha [Burkholderia rhizoxinica HKI 454]
 gi|312169960|emb|CBW76972.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Burkholderia
            rhizoxinica HKI 454]
          Length = 106

 Score = 68.7 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 2/53 (3%)

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
                       G   R   +V  +Q+  T KG  + +VT    +       +P
Sbjct: 2    LPAAALQRYRDGQLARACGLVTVRQRPGTAKG--VLFVTLEVESGHTNVIIWP 52


>gi|317484872|ref|ZP_07943763.1| PHP domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316923880|gb|EFV45075.1| PHP domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 268

 Score = 68.7 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 9  PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          P FV L  H++ S  +G  +  +++ + A+ +  A+A+TD + +    E        G++
Sbjct: 3  PRFVDLHTHTTAS--DGTDAPRDLIRRAASLKLAAVAVTDHDTVSGLDEAEAAGREYGVE 60

Query: 69 PIIGCQLDI 77
           I GC+L +
Sbjct: 61 IIRGCELGV 69


>gi|149001609|ref|ZP_01826582.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69]
 gi|147760067|gb|EDK67056.1| DNA polymerase III PolC [Streptococcus pneumoniae SP14-BS69]
          Length = 350

 Score = 68.7 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 87/278 (31%), Gaps = 68/278 (24%)

Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAV 747
           VI  ++ +  +  + +G     A  +   + K +  ++ +++      A K        +
Sbjct: 103 VIGCRDDI-MVYLMHAGLEPKMAFTIMERVRKGLWLKISEEERNGYIEAMKANKVPEWYI 161

Query: 748 NIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK--- 804
                +     Y F K+HAAAY +++ + A+ K H+P+ +  A  ++     +       
Sbjct: 162 ESCGKI----KYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIRAKAFDIKTMGAG 217

Query: 805 --------------------------------FCQDARQFNIQIMPPSVNTPCV-DFKVG 831
                                              +  +   +     +      +F + 
Sbjct: 218 LEVIKRRMEEISEKRKNNEASNVEIDLYTTLEIVNEMWERGFKFGKLDLYCSQATEFLID 277

Query: 832 DNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
            + +     A+ G+G   A+ ++ A  +  F S  +   R     L+  ++E       +
Sbjct: 278 GDTLIPPFVAMDGLGENVAKQLVRAREEGEFLSKTELRKR---GGLSSTLVEK------M 328

Query: 892 DCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAH 929
           D  G      L ++               +   ++F  
Sbjct: 329 DEMGI-----LGNMPE-------------DNQLSLFDE 348


>gi|329904389|ref|ZP_08273783.1| putative metal-dependent phosphoesterases (PHP family)
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327547993|gb|EGF32732.1| putative metal-dependent phosphoesterases (PHP family)
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 282

 Score = 68.7 bits (166), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS++S  +G L+   +  +  A+     A+TD + +    E    A A  +Q I G 
Sbjct: 6   LHCHSTFS--DGLLAPAQVAARAKANGVDVWALTDHDEVSGIAEARHAAQALDLQFIAGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           ++ I           G     T P +VL
Sbjct: 64  EISITWAGETVHIV-GLQIDETNPQLVL 90


>gi|104782900|ref|YP_609398.1| PHP family phosphoesterase [Pseudomonas entomophila L48]
 gi|95111887|emb|CAK16611.1| putative phosphoesterase (PHP family) [Pseudomonas entomophila
          L48]
          Length = 286

 Score = 68.7 bits (166), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +GALS   ++ +        +++TD + L    E  Q     G+Q + G 
Sbjct: 5  LHCHSTAS--DGALSPTALVARAHEHGVRTLSLTDHDTLEGLPEARQACAEQGMQWVSGV 62

Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSI 99
          +L                P    P +
Sbjct: 63 ELSCTWGGATIHVLGYDFPLDAPPLL 88


>gi|126668124|ref|ZP_01739086.1| hypothetical protein MELB17_08661 [Marinobacter sp. ELB17]
 gi|126627394|gb|EAZ98029.1| hypothetical protein MELB17_08661 [Marinobacter sp. ELB17]
          Length = 303

 Score = 68.3 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 5/91 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +GALS  ++L +        +A+TD + L         A    I+ I G 
Sbjct: 28  LHCHSTAS--DGALSPADLLARAHEKGVSHLALTDHDTLNGLRSARLAAQDYNIELISGV 85

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS 104
           +L    + +                   L  
Sbjct: 86  ELSCAWRSHTIHIVGLDFAEDDPQ---FLAR 113


>gi|295091713|emb|CBK77820.1| Predicted metal-dependent phosphoesterases (PHP family)
           [Clostridium cf. saccharolyticum K10]
          Length = 315

 Score = 68.3 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 33/153 (21%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC---AAGI 67
           ++ L VHS  S  +G ++   ++D  A     A+A+TD + +       + A      G+
Sbjct: 7   YIDLHVHS--SASDGTMTPAEVVDCAAKAGLSAVALTDHDTVAGVAPALEAARIRADKGL 64

Query: 68  -QP--IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL---VSTAEGYQRLIELVSRMYL 121
             P  I G +L    +   K T            ++ L     +      L       +L
Sbjct: 65  YSPEVIPGTELSCIWEHEQKKTEL---------HMLGLFVDCKS----GALC-----AFL 106

Query: 122 LDQGKQSVRICLSWLQEIGTEGLIM----LTGG 150
            D      R     LQ +  + + +    LTGG
Sbjct: 107 NDVLAARERRNDEILQRLAADHIYLSRQELTGG 139


>gi|293605791|ref|ZP_06688164.1| DNA-directed DNA polymerase III alpha subunit [Achromobacter
            piechaudii ATCC 43553]
 gi|292815786|gb|EFF74894.1| DNA-directed DNA polymerase III alpha subunit [Achromobacter
            piechaudii ATCC 43553]
          Length = 166

 Score = 68.3 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 2/57 (3%)

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +  ++  E           R   +V  +Q+ +T KG  + +VT  +          P
Sbjct: 58   RAQLQPAEVLNTYPDKRVARACGIVTVRQRPQTSKG--VIFVTLEDETGPVNVVVRP 112


>gi|253996062|ref|YP_003048126.1| PHP domain-containing protein [Methylotenera mobilis JLW8]
 gi|253982741|gb|ACT47599.1| PHP domain protein [Methylotenera mobilis JLW8]
          Length = 289

 Score = 68.3 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+  + +G LS   ++   A      +A+TD +++    E  Q A   GIQ I G 
Sbjct: 9  LHSHSN--ISDGLLSPTELVAHAAQHGVSVLALTDHDDISGLSEARQAAALHGIQLINGV 66

Query: 74 QLDIDMQDN 82
          ++ +  +  
Sbjct: 67 EISVTWKKR 75


>gi|320104117|ref|YP_004179708.1| PHP domain-containing protein [Isosphaera pallida ATCC 43644]
 gi|319751399|gb|ADV63159.1| PHP domain protein [Isosphaera pallida ATCC 43644]
          Length = 320

 Score = 68.3 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 80/273 (29%), Gaps = 46/273 (16%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+S S  +G+ +   ++   AA    A+AITD + +        +A   G+  + G 
Sbjct: 18  LHTHTSRS--DGSCAPGEVVRAAAALGLSAVAITDHDTIAGLSPARLEAERLGLILVPGV 75

Query: 74  QLDIDMQDN-LKMTNQGKTPFPTVPSIVL--LVS-----------T-------------- 105
           +L +  +     +   G        + +L  L                            
Sbjct: 76  ELTVHWRGREFHLLAYGFREEDPGLNAMLDGLAQARVERLRTIVANLEHRHGVVVEFEAV 135

Query: 106 AEGY-------QRLI-ELVSR---MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP 154
             GY         L   LV++       D   + +      L     +    +       
Sbjct: 136 RAGYPRAALGRGHLADHLVTQGVVASRRDAFDRFLGDDQLDLPRPSLDLEQAIHTVRQAG 195

Query: 155 IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVAT 214
              A       + + + + ++ L      V   R    DR    ++ +LA      +VA 
Sbjct: 196 GFTALAHPPRDLDDSQWVQWRDL--GMEAVE-TRWPAADRNTRVKMGRLARRLGFEIVAG 252

Query: 215 NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
           ++  F        H   + +        +DR R
Sbjct: 253 SD--FHHPGRAGRHVGAVGLGPGEWERLRDRLR 283


>gi|237733531|ref|ZP_04564012.1| phosphotransferase [Mollicutes bacterium D7]
 gi|229383364|gb|EEO33455.1| phosphotransferase [Coprobacillus sp. D7]
          Length = 274

 Score = 68.3 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 68/199 (34%), Gaps = 49/199 (24%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF---SQKACAAGI 67
           +  L VH++YS  +G  S+   +          IAITD + +F    F    +     G+
Sbjct: 3   YADLHVHTAYS--DGIHSIEETIKLAKEKGIKVIAITDHDTVF---HFEEVQKVCRQNGL 57

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           + I G ++     D  K              +V       G            L +    
Sbjct: 58  ETIRGVEMSCYDYDVHKKV-----------HVV-------GLG----------LNNHPYH 89

Query: 128 SVRICLSWLQ---EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             ++C   LQ   E   E + +L        ++     + + A++    +  +F   L++
Sbjct: 90  VEKLCQKTLQCRDEYHHELIKIL--------NQKGLNITYEDAKEYA-PYNIVFKMHLFL 140

Query: 185 NLQRHRGYDRYRESQVVQL 203
            +  H+  +    ++  +L
Sbjct: 141 AIV-HKYPEYNDINKYREL 158


>gi|303269800|ref|ZP_07355548.1| DNA polymerase III DnaE [Streptococcus pneumoniae BS458]
 gi|302640660|gb|EFL71059.1| DNA polymerase III DnaE [Streptococcus pneumoniae BS458]
          Length = 55

 Score = 68.3 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 22/53 (41%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
            L   + YS +E  +S+   +          +A+ D +NL+ A +F +    
Sbjct: 3  AQLDTKTVYSFMESVISIEKYVRAAKEYGYTHLAMMDIDNLYGAFDFLEITKK 55


>gi|288919036|ref|ZP_06413377.1| DNA polymerase III alpha subunit-like protein [Frankia sp. EUN1f]
 gi|288349576|gb|EFC83812.1| DNA polymerase III alpha subunit-like protein [Frankia sp. EUN1f]
          Length = 190

 Score = 68.3 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 63/183 (34%), Gaps = 18/183 (9%)

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS---------------QVAEKRLLTFKKLF 178
                       +LTG   G + RA                       A + L     LF
Sbjct: 6   EAFAAASGGHWQILTGCRKGAVPRALAAGEPAVEHERGMAVAERGVDAARRALDELVGLF 65

Query: 179 G-DRLYVNLQ-RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
           G + + V L  R    D  R   + +LA    LP+VAT N  F +         + AV  
Sbjct: 66  GRENVAVELWDRAAPLDSARNDALAELARDAGLPVVATGNVHFATPASARLAATMAAVRA 125

Query: 237 STVVSQKDRPRVTPDH-YLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRF 295
              + + D         +L++  EM + F   P A++    I   C+F L + AP LP F
Sbjct: 126 RRSLDEMDGWLPAAGTAHLRSGPEMAARFGRYPGAVDAAARIGAECAFGLDLVAPRLPDF 185

Query: 296 IEK 298
              
Sbjct: 186 PFP 188


>gi|147920239|ref|YP_685994.1| phosphoesterase [uncultured methanogenic archaeon RC-I]
 gi|110621390|emb|CAJ36668.1| predicted phosphoesterase [uncultured methanogenic archaeon RC-I]
          Length = 296

 Score = 68.3 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 96/294 (32%), Gaps = 23/294 (7%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +H++ S  +G  ++  +    +      ++ITD + +        +A   GI+ I G +
Sbjct: 6   HIHTTCS--DGRKTVPEVFQLASELGIRLLSITDHDTVAGYPAAFGEAEKHGIRLIPGVE 63

Query: 75  LDIDMQDNLKMTNQGKTPFPTVP-----SIVLLVSTAEGYQRLIELVSR--MYLLDQGKQ 127
                +D     +                + LL       +  + L+ R   YL ++ + 
Sbjct: 64  FSTRNEDGHVDVHVVGLRIDPDYAPLQTELKLLADARV--EARMRLLDRVNAYLAEKYEG 121

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              +    +++  + G I+     +  I      +  ++ E+       +F  RL   ++
Sbjct: 122 IEPVKFESVRKRVS-GTIVGKPHIAAEIIETARRSGIEIPEE---ELYAIF--RL-PEVE 174

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPR 247
             + Y+      +  +     LP++A +   +   +      +           +  + R
Sbjct: 175 TKKAYELTMAECIELIKAAGGLPVLA-HPFEYARPD----AVLKKFKKLGGTGVELCKYR 229

Query: 248 VTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECD 301
                      E  +  +   +    T+E+ARR    L   +    +  E   +
Sbjct: 230 QKTKMRFIRNIEPYARLTMERQLNMKTIEMARRYGLKLTACSDYHAKNGEPGME 283


>gi|303328152|ref|ZP_07358591.1| PHP domain protein [Desulfovibrio sp. 3_1_syn3]
 gi|302861978|gb|EFL84913.1| PHP domain protein [Desulfovibrio sp. 3_1_syn3]
          Length = 285

 Score = 68.3 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 60/248 (24%), Gaps = 62/248 (25%)

Query: 14  LQVHSSYSLL--EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           L  H+    L  +G  S + ++ K       A+A+TD + +    E  +     GI+ I 
Sbjct: 6   LHTHT----LASDGTDSPSALVQKAHTAGLAAVAVTDHDTVSGLDEAEEAGRDLGIKVIR 61

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY---------------------- 109
           GC+L    +           P    P          GY                      
Sbjct: 62  GCELSTHTEYGEVHILGLWLPRDAAPL-----QDQLGYLRRKRCERNRAIVEKLRALGLD 116

Query: 110 ------QRLIE-----------LVSRMYLLD---------QGKQSVRICLSWLQEIGTEG 143
                 + + +           L S+ Y+ D                +    L+      
Sbjct: 117 ISLEEVRAIAKESVGRPHIAAVLASKGYVRDVGEAFREYLGFYGKAYLPKEVLEPEAAVH 176

Query: 144 LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQL 203
           L+   G +                E  +            +    H  +        V+ 
Sbjct: 177 LLAGLGATVSLAHPLLQKYPLPWLEGFVEHLSGC--GLTAIEA-WHSEHSDADTRLCVEW 233

Query: 204 AYTHELPL 211
           A    L L
Sbjct: 234 ARRFGLGL 241


>gi|218459457|ref|ZP_03499548.1| DNA polymerase III alpha subunit protein [Rhizobium etli Kim 5]
          Length = 287

 Score = 68.3 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               G  +  A +V+ +Q+  + KG  + ++T  +         +P
Sbjct: 141  ARDGQWLMEAGLVLVRQRPGSAKG--VMFITIEDETGIANVVVWP 183


>gi|83589933|ref|YP_429942.1| PHP-like [Moorella thermoacetica ATCC 39073]
 gi|83572847|gb|ABC19399.1| PHP-like protein [Moorella thermoacetica ATCC 39073]
          Length = 280

 Score = 68.3 bits (165), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 13/118 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H++ S  +G L    ++         A+ ITD + +    E        G++ I G 
Sbjct: 7   LHTHTTAS--DGQLCPAKMVRLARERGLTALGITDHDTVSGLAEALAAGREVGLKVIPGI 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL-----VSTAEGYQRLIELVSRMYLLDQGK 126
           +L  + +            +     +  L            + L ++V    L D G 
Sbjct: 65  ELSTEWEGREIHLLGYGLDWEQGELMAFLETMRQARQR---RNL-KIV--ARLRDLGY 116


>gi|283850997|ref|ZP_06368282.1| PHP domain protein [Desulfovibrio sp. FW1012B]
 gi|283573643|gb|EFC21618.1| PHP domain protein [Desulfovibrio sp. FW1012B]
          Length = 305

 Score = 68.3 bits (165), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G+L  + ++   A +   A+A+TD + L    E        G++ I G 
Sbjct: 6  LHTHSTAS--DGSLFPSQLVALAAQNGLAALALTDHDTLDGLAEARTAGRVHGLEIIAGV 63

Query: 74 QLDIDMQDN 82
          +L +   D 
Sbjct: 64 ELSVADGDR 72


>gi|225448307|ref|XP_002264419.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 450

 Score = 67.9 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S  +G LS + ++++   +    +A+TD + +    E  + A   G++ I G 
Sbjct: 90  LHSHSIRS--DGFLSPSKVVERAHGNGVKVLALTDHDTMSGIPEALEAARKFGMRIIPGV 147

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++          + +G++       ++  
Sbjct: 148 EIS------TMFSPRGESGSEEPVHVLAY 170


>gi|207109660|ref|ZP_03243822.1| DNA polymerase III subunit alpha [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 168

 Score = 67.9 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 59/168 (35%), Positives = 99/168 (58%), Gaps = 2/168 (1%)

Query: 496 SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVI-GDRPLSQLVPMYRDVRSDLP 554
            + +E   ++    ++ E S  LE L R+A  HAA +V+   + L    P++   ++   
Sbjct: 1   PKIKELVESNELAKQVWEYSLNLENLNRNAGVHAAALVVDSQKELWHKTPLFASEKTGGI 60

Query: 555 VTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA-QRGVKVDLSLIPFDDHETYHLLT 613
           VTQ++MK++E   LIKFDFLGLKTLT++  +L  +  Q  + VD   +  DD + Y  + 
Sbjct: 61  VTQYSMKYLEPVDLIKFDFLGLKTLTVIDDALKIIKTQHKISVDFLSLDMDDPKVYKTIQ 120

Query: 614 TKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVY 661
           +  T+GIFQ+ES   +   + ++P   EDIIA+++L RPGP+++ +V 
Sbjct: 121 SGDTVGIFQIESGMFQGLNKRLRPSSFEDIIAIIALGRPGPMESGMVD 168


>gi|77165847|ref|YP_344372.1| PHP family metal-dependent phosphoesterase [Nitrosococcus oceani
           ATCC 19707]
 gi|254434372|ref|ZP_05047880.1| hypothetical protein NOC27_1303 [Nitrosococcus oceani AFC27]
 gi|76884161|gb|ABA58842.1| metal-dependent phosphoesterases (PHP family) [Nitrosococcus oceani
           ATCC 19707]
 gi|207090705|gb|EDZ67976.1| hypothetical protein NOC27_1303 [Nitrosococcus oceani AFC27]
          Length = 278

 Score = 67.9 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 58/167 (34%), Gaps = 19/167 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G L    ++ + A      +A+TD +      E S  A +  +  I G 
Sbjct: 8   LHTHS--TVSDGTLKPAELVRRAADQGVNVLALTDHDCTAGLTEASAVAESLALNLIPGV 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++ +           G       P +        G Q+L     R Y  ++ ++      
Sbjct: 66  EISVTWGGRTVHI-LGLGINQEEPGL------QAGLQKL-----RAYRDERAREIAHG-- 111

Query: 134 SWLQEIGTEGLIMLTGGSS-GPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             LQ+ G EG +      + G I     F    VA+      + +F 
Sbjct: 112 --LQKAGIEGALEGASCYAQGSILSRTHFARFLVAKGYAKNTQAVFK 156


>gi|89894682|ref|YP_518169.1| hypothetical protein DSY1936 [Desulfitobacterium hafniense Y51]
 gi|89334130|dbj|BAE83725.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 286

 Score = 67.9 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
          L  H+  S  +G L+   ++ + A     A+ ITD + L       +KA  AG
Sbjct: 13 LHCHT--SASDGLLTPWELVKQAAELGLKAVGITDHDTLSG----WEKASQAG 59


>gi|219669123|ref|YP_002459558.1| PHP domain protein [Desulfitobacterium hafniense DCB-2]
 gi|219539383|gb|ACL21122.1| PHP domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 286

 Score = 67.9 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
          L  H+  S  +G L+   ++ + A     A+ ITD + L       +KA  AG
Sbjct: 13 LHCHT--SASDGLLTPWELVKQAAELGLKAVGITDHDTLSG----WEKASQAG 59


>gi|255505835|ref|ZP_05348396.3| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Bryantella formatexigens DSM 14469]
 gi|255265562|gb|EET58767.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Bryantella formatexigens DSM 14469]
          Length = 289

 Score = 67.9 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VHS+ S  +G +S   ++         A A+TD + +    E    A    ++ + G 
Sbjct: 13 LHVHSNCS--DGTMSPAELVSYACEKGLRAFALTDHDTVAGLPEAFAAAEGTALEVVAGI 70

Query: 74 QLD 76
          +  
Sbjct: 71 EFS 73


>gi|167754655|ref|ZP_02426782.1| hypothetical protein CLORAM_00158 [Clostridium ramosum DSM 1402]
 gi|167705487|gb|EDS20066.1| hypothetical protein CLORAM_00158 [Clostridium ramosum DSM 1402]
          Length = 274

 Score = 67.9 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 68/199 (34%), Gaps = 49/199 (24%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF---SQKACAAGI 67
           +  L VH++YS  +G  S+   +          IAITD + +F    F    +     G+
Sbjct: 3   YADLHVHTAYS--DGIHSIEETIKLAKEKGIKVIAITDHDTVF---HFEEVQKVCRQNGL 57

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           + I G ++     D  K              +V       G            L +    
Sbjct: 58  ETIRGVEMSCYDYDVHKKV-----------HVV-------GLG----------LNNHPYH 89

Query: 128 SVRICLSWLQ---EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
             ++C   LQ   E   E + +L        ++     + + A++    +  +F   L++
Sbjct: 90  VEKLCQKTLQCRDEYHHELIEIL--------NQKGLNITYEDAKEYA-PYNIVFKMHLFL 140

Query: 185 NLQRHRGYDRYRESQVVQL 203
            +  H+  +    ++  +L
Sbjct: 141 AIV-HKYPEYNDINKYREL 158


>gi|312621881|ref|YP_004023494.1| PHP domain-containing protein [Caldicellulosiruptor
          kronotskyensis 2002]
 gi|312202348|gb|ADQ45675.1| PHP domain protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 279

 Score = 67.9 bits (164), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH+++S  +G L+   ++      +  AIAITD +     +    +    GI+ + G 
Sbjct: 4  LHVHTTFS--DGTLTPQEVVKLAKEKRLFAIAITDHDTTDGVIHAIDEGNRLGIKVVSGV 61

Query: 74 QLDIDMQ 80
          ++  D +
Sbjct: 62 EISADFE 68


>gi|3287186|emb|CAA75320.1| DNA polymerase III alpha chain-like protein [Lactococcus lactis
           subsp. cremoris]
          Length = 281

 Score = 67.9 bits (164), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 81/242 (33%), Gaps = 42/242 (17%)

Query: 687 GVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIA 746
            VI  ++ +  +  +  G     A  +   + K +  ++  ++      A +        
Sbjct: 35  SVIGCRDDI-MVYLIHKGLENGLAFTIMERVRKGMWNKIPAEEREKYVEAMREHEVPEWY 93

Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK-- 804
           +     +     Y F K+HAAAY +++ + A+ K H+P+ +  A  ++     +      
Sbjct: 94  IESCSKI----KYMFPKAHAAAYIMMALRVAYFKVHHPIFYYCAWFSIRATAFDIGVMGA 149

Query: 805 -------------------------------FCQDARQFNIQIMPPSVNTPCV-DFKVGD 832
                                           C +  +         +      +F +  
Sbjct: 150 GLEAVKSKMKEIKDKGFEATNVETNLYTTLELCNEMLERGFTFGKIDLYRSEATEFVIDG 209

Query: 833 NRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
           + +      + G+G   A+ I+ A A+  F S  +   R     +++ ++E++   G L+
Sbjct: 210 DTLIPPFVTMDGLGENVAKQIVAARAEGEFLSKMELRKR---GGVSQTIIENMTNMGVLE 266

Query: 893 CF 894
             
Sbjct: 267 GM 268


>gi|257457385|ref|ZP_05622556.1| PHP domain protein [Treponema vincentii ATCC 35580]
 gi|257445307|gb|EEV20379.1| PHP domain protein [Treponema vincentii ATCC 35580]
          Length = 286

 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 68/217 (31%), Gaps = 34/217 (15%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  S   +  +         A+TD + +    E  Q     GI+ + G 
Sbjct: 4   LHTHSTAS--DGTFSPAELAAEAHKAGLSLFALTDHDTVAGVAEAQQAGKTLGIRVLPGI 61

Query: 74  QLDID--MQDNLKMTNQGKTPFPTVPSIVLLVS------TAEGYQRLIELVSRMYLLDQG 125
           ++ ++    +   +     +   T+ S++                    ++      ++ 
Sbjct: 62  EISVEWQPGELHLLGLGIDSKNATLASLMQYAQEKRVERNR-------RII------EKF 108

Query: 126 KQ-SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYV 184
            +  + I    L  I    +I    G              +  +     +    G   Y+
Sbjct: 109 YEAGIVIDEEKLAHIAGGSVI----GRPHFAKYLVESGKVKTIQDAFQKYLAK-GRPFYI 163

Query: 185 NLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLS 221
             +     D      +  +   H +P++A   SL+LS
Sbjct: 164 EKECLPLSD-----AIAAIKVAHGVPVLAHPMSLYLS 195


>gi|46579069|ref|YP_009877.1| phosphotransferase domain-containing protein [Desulfovibrio
          vulgaris str. Hildenborough]
 gi|46448482|gb|AAS95136.1| PHP domain protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232914|gb|ADP85768.1| PHP domain protein [Desulfovibrio vulgaris RCH1]
          Length = 288

 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 8  SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          +P F+ L  H++ S  +G+ S  +++ K       A+A+TD + +    E        GI
Sbjct: 2  TPRFIDLHTHTTAS--DGSDSPADLVRKATEAGLAAVAVTDHDTVAGLDEAVAMGHETGI 59

Query: 68 QPIIGCQLDIDMQ 80
          + + GC+L +  +
Sbjct: 60 EVVRGCELGVRSE 72


>gi|295091740|emb|CBK77847.1| hypothetical protein [Clostridium cf. saccharolyticum K10]
          Length = 179

 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 37/169 (21%)

Query: 760 GFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEK------------------ 801
            F K+HAAAY +++++ A+ K  YP+ + AA  ++                         
Sbjct: 1   MFPKAHAAAYVMMAWRIAYCKVFYPLAYYAAFFSIRASGFSYELMCQGREKLEYHLADYK 60

Query: 802 ---------------IKKFCQDARQFNIQIMPPSVNTPCV-DFKVGDNRIYYSLAAIKGV 845
                            +  Q+      + MP  +      +F++ D ++  SL++I G+
Sbjct: 61  KRLDTLSKKEQDTLRDMRIVQEMYARGFEFMPIDIYRASARNFQIIDGKLMPSLSSIDGL 120

Query: 846 GTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF 894
           G   A  I+ A+ D PF S EDF +R    K+ + V + +   G L   
Sbjct: 121 GEKAADGIVFAAEDGPFLSKEDFINR---SKVTKTVADLMADLGLLKGL 166


>gi|78186331|ref|YP_374374.1| phosphoesterase PHP-like [Chlorobium luteolum DSM 273]
 gi|78166233|gb|ABB23331.1| Phosphoesterase PHP-like protein [Chlorobium luteolum DSM 273]
          Length = 286

 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G  +   I+DK A+    AI+ITD +++    +    A A GI+ I G 
Sbjct: 18 LHIHTKCS--DGIHTPEEIVDKAASAGLSAISITDHDSVAGIDKAKPSASAKGIELIPGV 75

Query: 74 QLD 76
          ++ 
Sbjct: 76 EMS 78


>gi|120603348|ref|YP_967748.1| phosphotransferase domain-containing protein [Desulfovibrio
          vulgaris DP4]
 gi|120563577|gb|ABM29321.1| PHP C-terminal domain protein [Desulfovibrio vulgaris DP4]
          Length = 288

 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 8  SPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          +P F+ L  H++ S  +G+ S  +++ K       A+A+TD + +    E        GI
Sbjct: 2  TPRFIDLHTHTTAS--DGSDSPADLVRKATEAGLAAVAVTDHDTVAGLDEAVAMGHETGI 59

Query: 68 QPIIGCQLDIDMQ 80
          + + GC+L +  +
Sbjct: 60 EVVRGCELGVRSE 72


>gi|197725318|pdb|3E0F|A Chain A, Crystal Structure Of A Putative Metal-Dependent
          Phosphoesterase (Bad_1165) From Bifidobacterium
          Adolescentis Atcc At 2.40 A Resolution
 gi|304446059|pdb|3O0F|A Chain A, Crystal Structure Of A Putative Metal-Dependent
          Phosphoesterase (Bad_1165) From Bifidobacterium
          Adolescentis Atcc 15703 At 1.94 A Resolution
          Length = 301

 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            H+ +S  +G  +   ++++        +AI D +      E ++ +   G+  ++G +
Sbjct: 18 HCHTVFS--DGTETPRTLVEQARKLGLHGVAIADHDTTAGWDEATEASEEIGLPLLLGTE 75

Query: 75 LDIDMQDNLKMTNQGKTPFPTVPSI 99
          +   + +++ +        P+   I
Sbjct: 76 IT-AVDEDVSVHXLAFQYDPSNEHI 99


>gi|322691546|ref|YP_004221116.1| hypothetical protein BLLJ_1357 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456402|dbj|BAJ67024.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 297

 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 78/249 (31%), Gaps = 66/249 (26%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H+++S  +G  +   + ++  A     +AI+D +      E    A   G+  + G +
Sbjct: 21  HCHTAFS--DGTETPATLAEQSKALGLKGVAISDHDTTAGWPEAEAAAHRVGLPLLRGTE 78

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEGY----QRLIELVSR----------M 119
           +     +N+ +   G    PT   I  L  +T        QR++EL+SR           
Sbjct: 79  IT-ATDENVSVHMLGYQYDPTNQHIADLFANTRAARLQRTQRMVELLSRDYPITWQSVLA 137

Query: 120 YLLDQGK---QSVRICLSWLQE------------------------------------IG 140
            + +  K       I  + +                                       G
Sbjct: 138 QVKEGSKTTIGRPHIADALVSAGVYRTRSEAFADAVSASSKYYIPTPSPTSHEVVAAVKG 197

Query: 141 TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV 200
             G+I++    +G + R     S    E  +            + +  HRG    +  ++
Sbjct: 198 AGGVILI--AHAGDVSRNRRLLSDDQIEALISEGLDG------LEV-WHRGNSPEQRERL 248

Query: 201 VQLAYTHEL 209
           + +   H+L
Sbjct: 249 LTICRRHQL 257


>gi|260548776|ref|ZP_05822998.1| metal-dependent phosphoesterase [Acinetobacter sp. RUH2624]
 gi|260407944|gb|EEX01415.1| metal-dependent phosphoesterase [Acinetobacter sp. RUH2624]
          Length = 283

 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 9/89 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+  + +G LS   ++      +   +A+TD + +       + A A  ++ I G 
Sbjct: 6   LHTHSN--ISDGTLSPELLVQAAVDVKLHTLALTDHDTMDGLQRAKKAAQAHDLKIISGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++           ++  T       IV L
Sbjct: 64  EIS-------SQWSRPSTKKSYGVHIVAL 85


>gi|298675161|ref|YP_003726911.1| phosphoresterase PHP domain-containing protein [Methanohalobium
           evestigatum Z-7303]
 gi|298288149|gb|ADI74115.1| PHP domain protein [Methanohalobium evestigatum Z-7303]
          Length = 221

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 69/214 (32%), Gaps = 58/214 (27%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AGIQ 68
           L  H+ YS   G      +++         IA+TD + +  ALE    A        G+ 
Sbjct: 5   LHTHTKYSPRCGVTEPKKLVNTAIKKGLDGIAVTDHDTIKGALE----AKKFETPDFGV- 59

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            IIGC++  D  + + +  Q                         E+ S           
Sbjct: 60  -IIGCEVSTDKGELIGLFLQD------------------------EITSTS--------- 85

Query: 129 VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQR 188
                  +++I  +G I++       +   F    S+        +K++      + +  
Sbjct: 86  ---PEDVIEDIHNQGGIVV-------VPHPFDEYRSKRFSSLSEYYKQIDA----IEVFN 131

Query: 189 HRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
            R           + A  + L +V  +++ +L+E
Sbjct: 132 SRCIKEKSNEAARRFANKNNLLMVGGSDAHYLNE 165


>gi|312135646|ref|YP_004002984.1| PHP domain-containing protein [Caldicellulosiruptor owensensis
          OL]
 gi|311775697|gb|ADQ05184.1| PHP domain protein [Caldicellulosiruptor owensensis OL]
          Length = 279

 Score = 67.1 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH+++S  +G L+   ++         AIAITD +         ++    G++ + G 
Sbjct: 4  LHVHTTFS--DGTLTPQEVVKLAKEKGLIAIAITDHDTTDGVKAAIEEGERLGLKVVSGV 61

Query: 74 QLDIDMQ 80
          ++  D +
Sbjct: 62 EISADFE 68


>gi|119026183|ref|YP_910028.1| hypothetical protein BAD_1165 [Bifidobacterium adolescentis ATCC
          15703]
 gi|118765767|dbj|BAF39946.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 300

 Score = 67.1 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/102 (11%), Positives = 39/102 (38%), Gaps = 11/102 (10%)

Query: 5  LEKSPSFVH-------LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE 57
          +    S+         +  H+ +S  +G  +   ++++        +AI D +      E
Sbjct: 1  MSHV-SYAEPPAQGWDIHCHTVFS--DGTETPRTLVEQARKLGLHGVAIADHDTTAGWDE 57

Query: 58 FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
           ++ +   G+  ++G ++   + +++ +        P+   I
Sbjct: 58 ATEASEEIGLPLLLGTEIT-AVDEDVSVHMLAFQYDPSNEHI 98


>gi|52425091|ref|YP_088228.1| hypothetical protein MS1036 [Mannheimia succiniciproducens MBEL55E]
 gi|52307143|gb|AAU37643.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 288

 Score = 67.1 bits (162), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 6/107 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS + I+ +       ++A+TD + +    E  ++A   G++ I G 
Sbjct: 8   LHCHSTAS--DGILSPSEIVQRAHEQGVQSLALTDHDTISGLTEARRQAELLGVEFINGV 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEGYQRLIELVSRM 119
           ++    ++ +     G       P +  LL    +   RL   ++  
Sbjct: 66  EISTSWENKVIHIV-GLNFDENSPEMTALLAK--QAQLRLNRALTIG 109


>gi|152997399|ref|YP_001342234.1| phosphotransferase domain-containing protein [Marinomonas sp.
          MWYL1]
 gi|150838323|gb|ABR72299.1| PHP domain protein [Marinomonas sp. MWYL1]
          Length = 283

 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 5  LEKSPSF--VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
          + ++ S+  V L  HS+ S  +G  S   ++D          A+TD + L   +E SQ+A
Sbjct: 1  MPEAASYRKVDLHTHSTRS--DGRFSPAELVDLAVEQGVSLFALTDHDTLDGIVEASQRA 58

Query: 63 CAAGIQPIIGCQLD 76
             G+  I G +L 
Sbjct: 59 VEHGLSFIHGVELS 72


>gi|291087726|ref|ZP_06347295.2| PHP domain protein [Clostridium sp. M62/1]
 gi|291074122|gb|EFE11486.1| PHP domain protein [Clostridium sp. M62/1]
          Length = 343

 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 33/153 (21%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC---AAGI 67
           ++ L VHS  S  +G ++   ++D  A     A+A+TD + +       + A      G+
Sbjct: 35  YIDLHVHS--SASDGTMTPAEVVDCAAKAGLSAVALTDHDTVAGVATALEAARIRADKGL 92

Query: 68  -QP--IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL---VSTAEGYQRLIELVSRMYL 121
             P  I G +L    +   K T            ++ L     +      L       +L
Sbjct: 93  YSPEVIPGTELSCIWEHEQKKTEL---------HMLGLFVDCKS----GALC-----AFL 134

Query: 122 LDQGKQSVRICLSWLQEIGTEGLIM----LTGG 150
            D      R     LQ +  + + +    LTGG
Sbjct: 135 NDVLAARERRNDEILQRLAADHIYLSRQELTGG 167


>gi|291614093|ref|YP_003524250.1| PHP domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291584205|gb|ADE11863.1| PHP domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 286

 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L+   ++ + AA +   +A+TD + +    E  Q A A GI+ I G 
Sbjct: 6   LHCHSNVS--DGTLTPTELVARAAAREVKVLALTDHDEVDGLTEAEQAATAHGIEFINGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           ++ +  + +      G    P  P++V
Sbjct: 64  EISVSWRSHTIHIV-GLHIDPQYPALV 89


>gi|126179543|ref|YP_001047508.1| phosphotransferase domain-containing protein [Methanoculleus
           marisnigri JR1]
 gi|125862337|gb|ABN57526.1| PHP C-terminal domain protein [Methanoculleus marisnigri JR1]
          Length = 221

 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 1/86 (1%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +HS+YS  +  +    IL +        +AITD + +  +L   +     G+  I G +
Sbjct: 9   HIHSNYS-QDSLMRPGRILKRAKEVGLTGVAITDHDTIRGSLHARKLEKEVGVTVIPGVE 67

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIV 100
           +  D  D + +    +        ++
Sbjct: 68  ILTDSGDIIGLFVNEEIRSRGWDEVI 93


>gi|254427175|ref|ZP_05040882.1| hypothetical protein ADG881_405 [Alcanivorax sp. DG881]
 gi|196193344|gb|EDX88303.1| hypothetical protein ADG881_405 [Alcanivorax sp. DG881]
          Length = 283

 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 14 LQVHSSYSLL--EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L  HS    L  +GALS  +++ + A      +A+TD + L    E  Q A A G+  I 
Sbjct: 7  LHSHS----LASDGALSPTDLVARAADYGVTHLALTDHDTLRGLDEARQAAQARGMTLIN 62

Query: 72 GCQLDIDMQDN 82
          G +L +   + 
Sbjct: 63 GIELSVRHDNR 73


>gi|146296057|ref|YP_001179828.1| phosphotransferase domain-containing protein
          [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409633|gb|ABP66637.1| PHP C-terminal domain protein [Caldicellulosiruptor
          saccharolyticus DSM 8903]
          Length = 279

 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH+++S  +G  S  ++++        AIAITD +         +K    G++ I G 
Sbjct: 4  LHVHTTFS--DGTYSPEDVVELAKEKGLFAIAITDHDTTDGVKMALKKGEEIGLKIISGV 61

Query: 74 QLDIDMQ 80
          ++  D +
Sbjct: 62 EISADFE 68


>gi|302810884|ref|XP_002987132.1| hypothetical protein SELMODRAFT_44729 [Selaginella moellendorffii]
 gi|300145029|gb|EFJ11708.1| hypothetical protein SELMODRAFT_44729 [Selaginella moellendorffii]
          Length = 309

 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 50/163 (30%), Gaps = 33/163 (20%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H++ S  +G LS   ++++        +A+TD + +         A + G++ I G 
Sbjct: 23  LHCHTTCS--DGLLSPPALVERAHKRGVKVLALTDHDTMAGVPAAIAAARSYGMRIIPGV 80

Query: 74  QL---DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           ++    +     +         +            A+G +    L    ++ +      R
Sbjct: 81  EISCRYLSSSGEMGELVHVLAYYGCCGP-------AQGLEE--RL---AHIREGRYARAR 128

Query: 131 ------------ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
                       +    + E   +G+          + RA   
Sbjct: 129 SMVDKLRDLKKPVRWESVLEFAGDGV----APGRPHVARALVQ 167


>gi|182417284|ref|ZP_02948633.1| PHP domain protein [Clostridium butyricum 5521]
 gi|237667808|ref|ZP_04527792.1| PHP domain protein [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378881|gb|EDT76396.1| PHP domain protein [Clostridium butyricum 5521]
 gi|237656156|gb|EEP53712.1| PHP domain protein [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 280

 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
           VH+  S  +G LS  +I+ +   +    +AITD + L    E   +     I+ I G +
Sbjct: 7  HVHT--SASDGILSPKDIVKRAKMNGVKFLAITDHDTLTGLDEAISEGLNQKIKVIPGIE 64

Query: 75 LD 76
          L 
Sbjct: 65 LS 66


>gi|220928267|ref|YP_002505176.1| PHP domain protein [Clostridium cellulolyticum H10]
 gi|219998595|gb|ACL75196.1| PHP domain protein [Clostridium cellulolyticum H10]
          Length = 285

 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G++S   ++    A    AIA+TD + +    E   +   +GI+ I G 
Sbjct: 7  LHTHSTAS--DGSMSPAELVRHAKAIGLAAIALTDHDTVDGVEEAINEGKRSGIEVIPGI 64

Query: 74 QLDIDMQ 80
          ++ +  +
Sbjct: 65 EISVRYK 71


>gi|51246088|ref|YP_065972.1| hypothetical protein DP2236 [Desulfotalea psychrophila LSv54]
 gi|50877125|emb|CAG36965.1| hypothetical protein DP2236 [Desulfotalea psychrophila LSv54]
          Length = 289

 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 19/141 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII-G 72
           L VHSS+S  +G+++   +++        A++ITD +N+ S  E        G+  +  G
Sbjct: 5   LHVHSSFS--DGSMTPTELVELAKRKGLHALSITDHDNILSVSEALCAGKQYGL-TVFSG 61

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS------TAEGY--QRLIEL---VS---- 117
            +L +                        L        T  G   + L+ L   ++    
Sbjct: 62  VELSLVYNGMDIHLLSYLFDQNNFELQTFLAEIQESRATRNGLIIKSLLSLGVKITAEEE 121

Query: 118 RMYLLDQGKQSVRICLSWLQE 138
           R +L ++      I    +++
Sbjct: 122 RCFLENRQLGRPHIAKLLVRK 142


>gi|78223182|ref|YP_384929.1| PHP-like [Geobacter metallireducens GS-15]
 gi|78194437|gb|ABB32204.1| PHP-like protein [Geobacter metallireducens GS-15]
          Length = 293

 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 6/98 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L VHS+YS  +G     +++   A     AIAI D + +    E        G++ +   
Sbjct: 7   LHVHSNYS--DGIHPPADLVKMAAERGLVAIAIADHDTVDGIDEALIAGARLGVEVVPAV 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV-LLVS---TAE 107
           +L  +      M   G       P +V +L       E
Sbjct: 65  ELSAEHGRYRDMHILGYHLDHRDPRLVDMLAEFRINRE 102


>gi|302788915|ref|XP_002976226.1| hypothetical protein SELMODRAFT_54787 [Selaginella
          moellendorffii]
 gi|300155856|gb|EFJ22486.1| hypothetical protein SELMODRAFT_54787 [Selaginella
          moellendorffii]
          Length = 296

 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H++ S  +G LS   ++++        +A+TD + +         A + G++ I G 
Sbjct: 10 LHCHTTCS--DGLLSPPALVERAHKRGVKVLALTDHDTMAGVPAAIAAARSYGMRIIPGV 67

Query: 74 QLD 76
          ++ 
Sbjct: 68 EIS 70


>gi|190149980|ref|YP_001968505.1| TrpH-like protein [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|189915111|gb|ACE61363.1| TrpH-like protein [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
          Length = 272

 Score = 66.4 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++ +    Q   +A+TD + +    E    A    I+ I G 
Sbjct: 5   LHSHSTAS--DGMLSPTELVQRALEQQIEMLALTDHDTVAGIQEAKHAAQGQPIRFIAGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++ I  +              T P++V L
Sbjct: 63  EISIVWEGKSIHLA-ALNVDETHPALVAL 90


>gi|53729176|ref|ZP_00134019.2| COG0613: Predicted metal-dependent phosphoesterases (PHP family)
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208151|ref|YP_001053376.1| TrpH-like protein [Actinobacillus pleuropneumoniae L20]
 gi|303250426|ref|ZP_07336624.1| TrpH-like protein [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307249876|ref|ZP_07531850.1| hypothetical protein appser4_6740 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307252221|ref|ZP_07534118.1| hypothetical protein appser6_7370 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307256690|ref|ZP_07538469.1| hypothetical protein appser10_6930 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307261132|ref|ZP_07542809.1| hypothetical protein appser12_6940 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|307263308|ref|ZP_07544926.1| hypothetical protein appser13_7270 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|126096943|gb|ABN73771.1| TrpH-like protein [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
 gi|302650752|gb|EFL80910.1| TrpH-like protein [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306858065|gb|EFM90147.1| hypothetical protein appser4_6740 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306860143|gb|EFM92159.1| hypothetical protein appser6_7370 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306864738|gb|EFM96642.1| hypothetical protein appser10_6930 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306869162|gb|EFN00962.1| hypothetical protein appser12_6940 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306871370|gb|EFN03096.1| hypothetical protein appser13_7270 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 272

 Score = 66.4 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++ +    Q   +A+TD + +    E    A    I+ I G 
Sbjct: 5   LHSHSTAS--DGMLSPTELVQRALEQQIEMLALTDHDTVAGIQEAKHAAQGQPIRFIAGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++ I  +              T P++V L
Sbjct: 63  EISIVWEGKSIHLA-ALNVDETHPALVAL 90


>gi|165976086|ref|YP_001651679.1| metal-dependent phosphoesterase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876187|gb|ABY69235.1| probable metal-dependent phosphoesterase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 272

 Score = 66.4 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++ +    Q   +A+TD + +    E    A    I+ I G 
Sbjct: 5   LHSHSTAS--DGMLSPTELVQRALEQQIEMLALTDHDTVAGIQEAKHAAQGQPIRFIAGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++ I  +                P++V L
Sbjct: 63  EISIVWEGKSIHLA-ALNVDEKHPALVAL 90


>gi|303252410|ref|ZP_07338576.1| TrpH-like protein [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247641|ref|ZP_07529683.1| hypothetical protein appser2_6360 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648869|gb|EFL79059.1| TrpH-like protein [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306855853|gb|EFM88014.1| hypothetical protein appser2_6360 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 272

 Score = 66.4 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++ +    Q   +A+TD + +    E    A    I+ I G 
Sbjct: 5   LHSHSTAS--DGMLSPTELVQRALEQQIEMLALTDHDTVAGIQEAKHAAQGQPIRFIAGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++ I  +              T P++V L
Sbjct: 63  EISIVWEGKSIHLA-ALNVDETHPALVAL 90


>gi|167035001|ref|YP_001670232.1| phosphotransferase domain-containing protein [Pseudomonas putida
           GB-1]
 gi|166861489|gb|ABY99896.1| PHP domain protein [Pseudomonas putida GB-1]
          Length = 286

 Score = 66.4 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +GALS   ++ +        +A+TD + +    E  Q     G++ + G 
Sbjct: 5   LHCHSTAS--DGALSPTVLVARAHEHGVQTLALTDHDTIEGLPEARQACVDLGMRWVSGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           +L                P    P   LL 
Sbjct: 63  ELSCTWGGATIHVLGYDFPLDAPP---LLA 89


>gi|226941024|ref|YP_002796098.1| hypothetical protein LHK_02105 [Laribacter hongkongensis HLHK9]
 gi|226715951|gb|ACO75089.1| phosphotransferase domain-containing protein [Laribacter
           hongkongensis HLHK9]
          Length = 287

 Score = 66.4 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L    ++ + AA     +A+TD +      E  Q A   G+  + G 
Sbjct: 6   LHCHSTAS--DGDLPPAELVARAAARGCRILALTDHDCTAGLAEARQAAETCGVHLVAGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           ++ +   +       G    P  P + L
Sbjct: 64  EVSVTWHNRTIHIV-GLGVDPQQPDLAL 90


>gi|52841672|ref|YP_095471.1| metal dependent phosphoesterase [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
 gi|52628783|gb|AAU27524.1| metal dependent phosphoesterase [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
          Length = 282

 Score = 66.4 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HSS+S  +GAL+   ++ + +  Q   +++TD + +         A    I+ + G 
Sbjct: 7  LHCHSSFS--DGALTPEELIKRASTLQVECLSLTDHDTVAGYDALYDAAVHTNIKIVKGI 64

Query: 74 QLD 76
          +L 
Sbjct: 65 ELS 67


>gi|319897052|ref|YP_004135247.1| hypothetical protein HIBPF07670 [Haemophilus influenzae F3031]
 gi|317432556|emb|CBY80916.1| conserved hypothetical protein [Haemophilus influenzae F3031]
          Length = 274

 Score = 66.4 bits (160), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 3/97 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++ +  A     +A+ D + +    E    A   GI+ I G 
Sbjct: 7   LHCHSTAS--DGVLSPTELVYRAYAQGVNVLALCDHDTIAGIDEAEISAKEVGIELITGV 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
           ++     +   +   G     T P +  L+ + +  +
Sbjct: 65  EIS-TNWEGRGIHIVGLNFDKTHPKMTALLQSQKALR 100


>gi|307245524|ref|ZP_07527611.1| hypothetical protein appser1_7280 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254480|ref|ZP_07536316.1| hypothetical protein appser9_7260 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258938|ref|ZP_07540669.1| hypothetical protein appser11_7350 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306853583|gb|EFM85801.1| hypothetical protein appser1_7280 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862530|gb|EFM94488.1| hypothetical protein appser9_7260 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866962|gb|EFM98819.1| hypothetical protein appser11_7350 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 272

 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++ +    Q   +A+TD + +    E    A    I+ I G 
Sbjct: 5   LHSHSTAS--DGMLSPTELVQRALEQQIEMLALTDHDTVAGIQEAKHAAQGQPIRFIAGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++ I  +              T P++V L
Sbjct: 63  EISIVWEGKSIHLA-ALNVDETHPALVAL 90


>gi|260598147|ref|YP_003210718.1| protein trpH [Cronobacter turicensis z3032]
 gi|260217324|emb|CBA31311.1| Protein trpH [Cronobacter turicensis z3032]
          Length = 298

 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +        +AITD +         Q+   AG  ++ I 
Sbjct: 18 LHSHTTAS--DGLLTPEQLVHRAVEMGIHTLAITDHDTTAGLPAAHQEIKHAGLALRLID 75

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 76 GVEISTLWENH 86


>gi|197335981|ref|YP_002155837.1| PHP domain containing protein [Vibrio fischeri MJ11]
 gi|197317471|gb|ACH66918.1| PHP domain containing protein [Vibrio fischeri MJ11]
          Length = 279

 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 5/97 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H++ S  +G LS   ++++  +     +AITD +++    E           +Q I 
Sbjct: 5   LHSHTTAS--DGRLSPTELVERAVSFDVKVLAITDHDSVAGLDEAHAAIKEQNLPLQLID 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           G ++   +  N  +   G       P +V L+   E 
Sbjct: 63  GIEIS-TLWSNKDIHVVGLNLDIHHPDLVELIKNQEA 98


>gi|284042257|ref|YP_003392597.1| PHP domain protein [Conexibacter woesei DSM 14684]
 gi|283946478|gb|ADB49222.1| PHP domain protein [Conexibacter woesei DSM 14684]
          Length = 640

 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 65/205 (31%), Gaps = 47/205 (22%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H+ +S  + A  +  +L    A    AIA+TD N +  ALE   +A A+GI+ I+G 
Sbjct: 412 LHMHTDHS-GDCATPVEVLLATAKARGLGAIAVTDHNEISGALEA--QAKASGIKVIVGE 468

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++    Q  +      +     +     L +T          ++ +              
Sbjct: 469 EVKTKDQGEVIGLFLTELIPRGLS----LAAT----------IAEIKRQGGVVYVPH--- 511

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
                               P DR       +     L            + +   R   
Sbjct: 512 --------------------PFDRMHAVPDYEHLLAVLDDVDA-------IEIFNPRIAI 544

Query: 194 RYRESQVVQLAYTHELPLVATNNSL 218
           +    + V+ A  + +P  A +++ 
Sbjct: 545 QEFNEEAVRFAAKYRIPAGAGSDAH 569


>gi|291522841|emb|CBK81134.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Coprococcus catus GD/7]
          Length = 277

 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G+++ + ++   A+    A+A+TD +      E  Q A   GI+ + G 
Sbjct: 6  LHTHSTAS--DGSMTPSELVHHAASCGLRAVALTDHDTTVGLTEAQQAANEIGIELVHGV 63

Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSI 99
          +L     D  +    G       P  
Sbjct: 64 ELA-TWLDKTEFHIVGLDINENNPHF 88


>gi|167748097|ref|ZP_02420224.1| hypothetical protein ANACAC_02841 [Anaerostipes caccae DSM 14662]
 gi|167652089|gb|EDR96218.1| hypothetical protein ANACAC_02841 [Anaerostipes caccae DSM 14662]
          Length = 304

 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 9/73 (12%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----QKACAAGIQP 69
          L +HS YS  +G      ++ K        +A+TD N+    +       + A   GI  
Sbjct: 13 LHMHSYYSD-DGEYQPEELVKKCKEKGIQYMAVTDHNS----VRAVGEGREAAQKEGIHF 67

Query: 70 IIGCQLDIDMQDN 82
          I G ++D   +D 
Sbjct: 68 ISGVEVDCTFKDR 80


>gi|302872359|ref|YP_003840995.1| PHP domain protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302575218|gb|ADL43009.1| PHP domain protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 279

 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH+++S  +G  +   ++         AIAITD +      +  ++    G++ + G 
Sbjct: 4  LHVHTTFS--DGTFTPQEVVRFAKEKGLFAIAITDHDTTDGVKDAIEEGERLGLKVVSGV 61

Query: 74 QLDIDMQ 80
          ++  D +
Sbjct: 62 EISADFE 68


>gi|300114808|ref|YP_003761383.1| PHP domain-containing protein [Nitrosococcus watsonii C-113]
 gi|299540745|gb|ADJ29062.1| PHP domain protein [Nitrosococcus watsonii C-113]
          Length = 278

 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 19/167 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L    ++ + A      +A+TD +      E S       +  I G 
Sbjct: 8   LHTHSTAS--DGTLKPAELVRRAAGQGVNVLALTDHDCTAGLTEASVATEDLALNLIPGV 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++ +           G       P +        G Q+L     R Y  ++ ++      
Sbjct: 66  EISVTWGGRTVHI-LGLGINQEEPGL------QAGLQKL-----RSYRDERAREIAHG-- 111

Query: 134 SWLQEIGTEGLIMLTGGSS-GPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             LQ+ G EG +      + G I     F    VA       + +F 
Sbjct: 112 --LQKAGIEGALEGASCYAQGSILSRTHFARFLVARGYAKNTQAVFK 156


>gi|325578396|ref|ZP_08148531.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160132|gb|EGC72261.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 275

 Score = 66.0 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + K      L  HS+ S  +G L+   ++ +        +A+ D + +    E   +A  
Sbjct: 1   MTKKYD---LHCHSTAS--DGVLTPTELVQRAHEQGVNVLALCDHDTVMGIDEAQIEADK 55

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV-LLVS 104
            GI+ I G ++     +   +   G     T P +  LL  
Sbjct: 56  LGIELINGVEIS-TNWEGRGIHIVGLNFDKTHPKMTALLAE 95


>gi|270160109|ref|ZP_06188765.1| PHP domain protein [Legionella longbeachae D-4968]
 gi|289165113|ref|YP_003455251.1| TrpH protein [Legionella longbeachae NSW150]
 gi|269988448|gb|EEZ94703.1| PHP domain protein [Legionella longbeachae D-4968]
 gi|288858286|emb|CBJ12154.1| putative TrpH protein [Legionella longbeachae NSW150]
          Length = 279

 Score = 66.0 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS++S  +GAL+   ++ K    +   +++TD + +       Q A    I+ I G 
Sbjct: 4  LHCHSNFS--DGALTPKALIQKAQNQKIRCLSLTDHDTVAGYPGLLQAATNTSIRIINGI 61

Query: 74 QLDIDMQDN 82
          ++ +  + +
Sbjct: 62 EISVRWKKH 70


>gi|154488992|ref|ZP_02029841.1| hypothetical protein BIFADO_02302 [Bifidobacterium adolescentis
          L2-32]
 gi|154083129|gb|EDN82174.1| hypothetical protein BIFADO_02302 [Bifidobacterium adolescentis
          L2-32]
          Length = 300

 Score = 66.0 bits (159), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 11/102 (10%), Positives = 38/102 (37%), Gaps = 11/102 (10%)

Query: 5  LEKSPSFVH-------LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE 57
          +    S+         +  H+ +S  +G  +   ++ +        +AI D +      E
Sbjct: 1  MSHV-SYAEPPAQGWDIHCHTVFS--DGTETPRTLVAQARKLGLHGVAIADHDTTAGWDE 57

Query: 58 FSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
           ++ +   G+  ++G ++   + +++ +        P+   +
Sbjct: 58 ATEASEEIGLPLLLGTEIT-AVDEDVSVHMLAFQYDPSNEHM 98


>gi|54294523|ref|YP_126938.1| hypothetical protein lpl1599 [Legionella pneumophila str. Lens]
 gi|53754355|emb|CAH15839.1| hypothetical protein lpl1599 [Legionella pneumophila str. Lens]
          Length = 279

 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HSS+S  +GAL+   ++ +    Q   +++TD + +         A    I+ + G 
Sbjct: 4  LHCHSSFS--DGALTPEELIKRATTLQVQCLSLTDHDTVAGYDALYDAAIHTNIKIVKGV 61

Query: 74 QLD 76
          +L 
Sbjct: 62 ELS 64


>gi|282163333|ref|YP_003355718.1| putative phosphatase, PHP family [Methanocella paludicola SANAE]
 gi|282155647|dbj|BAI60735.1| putative phosphatase, PHP family [Methanocella paludicola SANAE]
          Length = 219

 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H+ YS  +GA+   + +          IAITD + +   LE  +     G+  I+G 
Sbjct: 6   LHMHTIYS-RDGAIKPADAIRIAKKRGLDGIAITDHDTIRGGLEALKL-KTEGLDIIVGA 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           ++  D  D + +    +        ++
Sbjct: 64  EIKTDRGDVIGLFLNEEIRERDHMEVI 90


>gi|213585447|ref|ZP_03367273.1| DNA polymerase III subunit alpha [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 38

 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 860 KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             F  + DF  ++D  K+NRR LESL+ AGA D FG++
Sbjct: 1   GEFKDINDFLGKIDPTKINRRTLESLIKAGAFDEFGFT 38


>gi|189424390|ref|YP_001951567.1| PHP domain protein [Geobacter lovleyi SZ]
 gi|189420649|gb|ACD95047.1| PHP domain protein [Geobacter lovleyi SZ]
          Length = 286

 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 4/88 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-CAAGIQPIIG 72
           L +HSS S  +G L+   ++          IA+ D + +   +E +  A    GI+ I G
Sbjct: 4   LHLHSSCS--DGILAPAQLVSAAQLSGLSTIALCDHDTVAG-VEAATLAGKEQGIEVIPG 60

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
            +L +  +    +   G       P + 
Sbjct: 61  VELSVCFRGFSDVHLLGYWIDIYAPELT 88


>gi|302668628|ref|YP_003833076.1| DNA polymerase III-associated protein [Butyrivibrio proteoclasticus
           B316]
 gi|302397592|gb|ADL36494.1| DNA polymerase III-associated protein [Butyrivibrio proteoclasticus
           B316]
          Length = 480

 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 114/237 (48%), Gaps = 2/237 (0%)

Query: 569 IKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY-HLLTTKGTLGIFQLESSG 627
            + D + +         L    +    +         + T+ HL          +   +G
Sbjct: 244 ERIDIVRIDKTDPAVFELLLSGETNGILFFDKDDPHSYSTWWHLDDNGKWHEYHEPLVAG 303

Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQG 687
                E ++P  +++++A ++L RP   ++I  Y       + I    P ++ +L  T G
Sbjct: 304 NAALYEVIRPKNMDELMAAITLDRPLSEEHIEKYLRNIKNSQYITYECPELETILSTTYG 363

Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISK-TIA 746
            +IYQEQ+M+I Q L G+S  ++D+ RR + K+ +  + + +E F+ GA+ + I    +A
Sbjct: 364 CVIYQEQIMRILQDLGGFSPEKSDLCRRDLSKRKQFTIGEMREEFVYGATSSKIVGMDVA 423

Query: 747 VNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIK 803
             IF++L   A Y FNKSH AA++++ Y+ AW+K +Y  EF+ A+        + + 
Sbjct: 424 NAIFDMLWDKARYSFNKSHVAAFSLMIYEMAWLKLYYRSEFMEAAEKYRGIKSDILP 480



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 302 DIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVA 361
              K     L      G   +            +D   RL  EL VI +    G FLI+ 
Sbjct: 77  PDGKTAFGFLEELCHKGFSEKYPN-------VTEDVHARLAHELEVINKKGMVGGFLIIY 129

Query: 362 DFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMSMPD-FDI 420
           D I++A+ NN+ + PG G+  GS+ AY L IT +DP++ +LLFER+LN  R +      I
Sbjct: 130 DLIEFARSNNLMISPGCGALPGSLVAYCLGITGVDPIKENLLFERYLNMGRETPSYCIRI 189

Query: 421 DFCQDRRDEVIRYVQNKYG 439
           D  +  +  +  Y+   YG
Sbjct: 190 DVEKGAKPLIFGYLTEMYG 208


>gi|260588431|ref|ZP_05854344.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM
           20583]
 gi|260541305|gb|EEX21874.1| putative DNA polymerase III, alpha subunit [Blautia hansenii DSM
           20583]
          Length = 428

 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 831 GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR-RVLESLVFAG 889
            +NRI Y+L AI G+G    R ++E   ++P+  ++DF  R+   KL +   +  L+ AG
Sbjct: 25  ENNRIIYALKAINGIGDDVVRILLE---NRPYRDMQDFYERMIKTKLVKNSQMMQLIKAG 81

Query: 890 ALDCF-GYSRMQLL 902
             D      R++L+
Sbjct: 82  VFDEISNTDRIELM 95


>gi|167844170|ref|ZP_02469678.1| error-prone DNA polymerase [Burkholderia pseudomallei B7210]
          Length = 95

 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 991  RGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             G   R   +V ++Q   T KG  + +VT  +          P
Sbjct: 1    NGRLARACGLVTARQMPGTAKG--VLFVTLEDETGCVNVIVRP 41


>gi|156933737|ref|YP_001437653.1| hypothetical protein ESA_01563 [Cronobacter sakazakii ATCC
          BAA-894]
 gi|156531991|gb|ABU76817.1| hypothetical protein ESA_01563 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 292

 Score = 65.6 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +        +AITD +         ++   AG  ++ I 
Sbjct: 12 LHSHTTAS--DGLLTPEQLVHRAVEMGIHTLAITDHDTTAGLPAAHEEIARAGLALRLID 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTLWENH 80


>gi|302877022|ref|YP_003845655.1| PHP domain-containing protein [Clostridium cellulovorans 743B]
 gi|307687711|ref|ZP_07630157.1| PHP domain-containing protein [Clostridium cellulovorans 743B]
 gi|302579879|gb|ADL53891.1| PHP domain protein [Clostridium cellulovorans 743B]
          Length = 286

 Score = 65.6 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+  + +G+ +   ++D    ++  AIA+TD +N+    E ++ A    I  + G 
Sbjct: 7  LHTHSN--ITDGSCTPKELIDVAVKEKVKAIALTDHDNIGGLEEAAKYAKEKNIDFLKGI 64

Query: 74 QLDIDMQDNLKMTNQGKTPFPT 95
          ++    +D   +   G    PT
Sbjct: 65 EISALYRDGRIIHILGIGIDPT 86


>gi|307610145|emb|CBW99691.1| hypothetical protein LPW_14591 [Legionella pneumophila 130b]
          Length = 279

 Score = 65.6 bits (158), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HSS+S  +GAL+   ++ +    Q   +++TD + +         A    I+ + G 
Sbjct: 4  LHCHSSFS--DGALTPEELIKRATTLQVQCLSLTDHDTVAGYDALYDAAIHTNIKIVKGI 61

Query: 74 QLD 76
          +L 
Sbjct: 62 ELS 64


>gi|325474669|gb|EGC77855.1| PHP domain-containing protein [Treponema denticola F0402]
          Length = 291

 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   +   +      A A+TD + L    E + +A   GI  I G 
Sbjct: 4  LHTHSTAS--DGTFTPAELAAAVKKAGISAFALTDHDILSGLDEAAAEAKRQGIIFIRGV 61

Query: 74 QLDIDMQDN 82
          ++ +     
Sbjct: 62 EISVKWSPG 70


>gi|85860568|ref|YP_462770.1| DNA polymerase IV [Syntrophus aciditrophicus SB]
 gi|85723659|gb|ABC78602.1| DNA polymerase IV [Syntrophus aciditrophicus SB]
          Length = 584

 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 75/239 (31%), Gaps = 48/239 (20%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT-NNL--FSAL---EFSQKACA--- 64
           L VH+++S  +G  SL ++     A     +AITD    L     L      ++  A   
Sbjct: 346 LHVHTNWS--DGTASLEDMARAAKALGYQYLAITDHSGGLGIAGGLNEERLLKQMQAIRQ 403

Query: 65  -----AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                 GI+ + G +++I     L + +   +    V + V                S  
Sbjct: 404 LDERLEGIRLLAGIEVNILADGRLDLPDGILSRLDVVVASVHSALNQ----------SEA 453

Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRA-FFFNSSQVAEKRLLTFKKLF 178
            +              L+ +    + +L   +   I +        +   +     +K+ 
Sbjct: 454 KM----------TRRILKALENPHVDILAHPTCRLIGQREPIAVDLEAVFQAAAQHRKI- 502

Query: 179 GDRLYVNLQRHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
                + +  +   DR     + +  A    + L    ++     E ++     +A+A 
Sbjct: 503 -----LEI--NSMPDRLDLQDISIYRARELGVLLAIDTDA--HRPEHFDLVRFGIAMAR 552


>gi|222055485|ref|YP_002537847.1| PHP domain protein [Geobacter sp. FRC-32]
 gi|221564774|gb|ACM20746.1| PHP domain protein [Geobacter sp. FRC-32]
          Length = 280

 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+YS  +G      ++   AA     IA+ D + +    E  +   +  ++ I   
Sbjct: 4  LHIHSTYS--DGIYKPAELVAMAAAKGLKTIALADHDTVAGIDEALEAGQSRNVEVIPAV 61

Query: 74 QLDIDMQDNLKM 85
          +L +       +
Sbjct: 62 ELSVQFDTYQDV 73


>gi|320161955|ref|YP_004175180.1| DNA polymerase X family protein [Anaerolinea thermophila UNI-1]
 gi|319995809|dbj|BAJ64580.1| DNA polymerase X family protein [Anaerolinea thermophila UNI-1]
          Length = 581

 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 10/57 (17%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            L  HS++S  +GA+S+  ++    A    AIAITD ++    +         G++P
Sbjct: 345 ELHTHSTWS--DGAVSIEEMVRAALARGYHAIAITDHSSYMGIVR--------GMKP 391


>gi|296454513|ref|YP_003661656.1| PHP C-terminal domain-containing protein [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296183944|gb|ADH00826.1| PHP C-terminal domain protein [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 297

 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 75/249 (30%), Gaps = 66/249 (26%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H+ +S  +G  +   + ++  A     +AI+D +      E        G+  + G +
Sbjct: 21  HCHTVFS--DGTETPATLAEQSKALGLKGVAISDHDTTAGWPEAEAATHRVGLPLLRGTE 78

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEGY----QRLIELVSR----------M 119
           +     +N+ +   G    PT   I  L   T        QR++EL+SR           
Sbjct: 79  IT-ATDENVSVHMLGYQYDPTNQHITDLFADTRAARLQRTQRMVELLSRDYPITWQSVLA 137

Query: 120 YLLDQGK---QSVRICLSWLQE------------------------------------IG 140
            + +  K       I  + +                                       G
Sbjct: 138 QVKEGDKTTIGRPHIADALVSAGVYRTRSEAFADAVSASSKYYIPTPSPTSHEVVAAVKG 197

Query: 141 TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV 200
             G+I++    +G + R     S    E  +            + +  HRG    +  ++
Sbjct: 198 AGGVILI--AHAGDVSRNRRLLSDDQIEALISEGLDG------LEV-WHRGNSPEQRERL 248

Query: 201 VQLAYTHEL 209
           + +   H+L
Sbjct: 249 LTICRRHQL 257


>gi|158316805|ref|YP_001509313.1| DNA-directed DNA polymerase [Frankia sp. EAN1pec]
 gi|158112210|gb|ABW14407.1| DNA-directed DNA polymerase [Frankia sp. EAN1pec]
          Length = 260

 Score = 65.2 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 60/146 (41%), Positives = 95/146 (65%), Gaps = 4/146 (2%)

Query: 654 PIDNIVVYNNRKNGKEKIVSIHPLIDPMLKE----TQGVIIYQEQVMQIAQLLSGYSLSE 709
              + + Y +RKNG++ +V +HP +D  L++    T  +++YQEQVM IA+ L+GYSL  
Sbjct: 115 AAKSHIEYADRKNGRKPVVPVHPELDGPLEDILGATYHLVVYQEQVMTIARELAGYSLGR 174

Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
           AD+LRRAMGKK K+ +D     F +G +  G S   A  ++++L  F+ Y FNKSH A Y
Sbjct: 175 ADLLRRAMGKKKKDVLDAHHAEFTAGMTGRGYSAEAAQALWDVLVPFSGYRFNKSHTAGY 234

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLE 795
            V+++ TA++K ++P E++AA +T  
Sbjct: 235 GVVAFWTAYLKANFPAEYMAALLTSV 260


>gi|125975229|ref|YP_001039139.1| PHP-like protein [Clostridium thermocellum ATCC 27405]
 gi|256003109|ref|ZP_05428101.1| PHP domain protein [Clostridium thermocellum DSM 2360]
 gi|281419203|ref|ZP_06250219.1| PHP domain protein [Clostridium thermocellum JW20]
 gi|125715454|gb|ABN53946.1| PHP-like protein [Clostridium thermocellum ATCC 27405]
 gi|255992800|gb|EEU02890.1| PHP domain protein [Clostridium thermocellum DSM 2360]
 gi|281407069|gb|EFB37331.1| PHP domain protein [Clostridium thermocellum JW20]
 gi|316939393|gb|ADU73427.1| PHP domain protein [Clostridium thermocellum DSM 1313]
          Length = 282

 Score = 65.2 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           F+ + +HS+ S  +G++  + ++     +   A+A+TD + +    E  ++    G++ 
Sbjct: 3  RFIDMHIHSTAS--DGSMRPSELVRHAKENGLAAVALTDHDTVDGIKEALEEGERIGLEV 60

Query: 70 IIGCQLDIDMQDNLKM 85
          + G ++ +D    + M
Sbjct: 61 VPGVEISLDFDTEMHM 76


>gi|153873150|ref|ZP_02001825.1| polymerase III subunit alpha [Beggiatoa sp. PS]
 gi|152070383|gb|EDN68174.1| polymerase III subunit alpha [Beggiatoa sp. PS]
          Length = 170

 Score = 65.2 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 4/167 (2%)

Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
           +++KLEGL R+   HA G+VI    L+   P+Y +      +TQF+   +E  GL+KFDF
Sbjct: 1   MARKLEGLTRNPGKHAGGVVIAPTVLTDFTPLYCEADGSDLMTQFDKGDVEAVGLVKFDF 60

Query: 574 LGLKTLTLLQKSLDFLAQ-RGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQAL 632
           LGL+TLT+++ +L+ +      K+D++ IP DD ETY L     T  +FQLESSG++ + 
Sbjct: 61  LGLRTLTIIKWALEMIHDSTDKKIDIAKIPLDDPETYDLFKRADTTAVFQLESSGIKSSF 120

Query: 633 EGMQPDCIEDI---IALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHP 676
                  +  +      ++L R      +++ N        I +   
Sbjct: 121 GNYAQIALMILWPWSLYIALVRYNLAWLMILLNANMEKNLNIHTPIW 167


>gi|258592351|emb|CBE68660.1| PHP-like [NC10 bacterium 'Dutch sediment']
          Length = 289

 Score = 65.2 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 57/177 (32%), Gaps = 21/177 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++          +A+TD + L        +A   GIQ + G 
Sbjct: 6   LHAHSTAS--DGVLSPQELVHLAKDSGLSVLALTDHDTLEGLPMAMAEAERVGIQVVAGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLV--STAEGYQRLIELVSRMYLLDQGKQSVRI 131
           ++   ++D                    L               + R   + +   ++ +
Sbjct: 64  EITAHVEDLEIHILGHFIDSDDNRLAEFLASSRNDR--------IERARRMTEKLWTLGL 115

Query: 132 CLSWLQEIGTEGLIMLTGGSSG--PIDRAFFFNSSQV-AEKRLLTFKKLFGDRLYVN 185
            L        E L + +G S G   + +A       V  ++    +   FG   YV 
Sbjct: 116 PLDV-----DEVLSLASGPSVGRPHVAQAMIRRGYVVSLKEAFDRYL-TFGKPGYVE 166


>gi|42528118|ref|NP_973216.1| phosphotransferase domain-containing protein [Treponema denticola
          ATCC 35405]
 gi|41819163|gb|AAS13135.1| PHP domain protein [Treponema denticola ATCC 35405]
          Length = 291

 Score = 65.2 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   +   +      A A+TD + L    E + +A   GI  I G 
Sbjct: 4  LHTHSTAS--DGTFTPAELAAAVKKAGISAFALTDHDILSGLDEAAAEAKRQGIIFIRGV 61

Query: 74 QLDIDMQDN 82
          ++ +     
Sbjct: 62 EISVKWSPG 70


>gi|308271417|emb|CBX28025.1| hypothetical protein N47_G33490 [uncultured Desulfobacterium sp.]
          Length = 302

 Score = 64.8 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 10/87 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS+ S  +G L  N IL         AIAITD +     ++ S++A   GI      
Sbjct: 23  LHIHSNAS--DGTLYPNEILALAKKLGLSAIAITDHDT----IDGSKEAIETGIP----S 72

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV 100
                    +        P      ++
Sbjct: 73  DFKFLTGVEISADPPPSFPCSGSFHVL 99


>gi|237748692|ref|ZP_04579172.1| phosphotransferase domain-containing protein [Oxalobacter
          formigenes OXCC13]
 gi|229380054|gb|EEO30145.1| phosphotransferase domain-containing protein [Oxalobacter
          formigenes OXCC13]
          Length = 277

 Score = 64.8 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  S  +G LS   ++ +  A+    +A+TD + +    E  + A   GI+ + G 
Sbjct: 6  LHSHSRVS--DGVLSPTELVGRAQANGVKVLALTDHDEVGGITEAKKAAAKHGIRLVSGV 63

Query: 74 QLDIDM 79
          ++ I  
Sbjct: 64 EISITW 69


>gi|168334757|ref|ZP_02692885.1| PHP domain protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 285

 Score = 64.8 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 59/178 (33%), Gaps = 43/178 (24%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA----GIQP 69
           L  HS+ S  +G L+   +     A    AIA+TD +      E       A    G++ 
Sbjct: 6   LHTHSTMS--DGTLTPRELAFYAKAKGLFAIALTDHDTTAGIAE----CIKAGNMVGLKV 59

Query: 70  IIGCQL--------------DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
           I G ++               ID+++        K                +  +RL EL
Sbjct: 60  IPGIEISCKYHKIEIHLLGYYIDIENQTLQDVIAKILNERK------ARNVKMIERLTEL 113

Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSG-PIDRAFFFNSSQVAEKRLL 172
                          I +  L     E + +  G  +G  +++ +F N  +V EK L 
Sbjct: 114 ------------GYPITMKDLNPNNDENMSITRGNVAGVLLEKGYFANREEVFEKCLR 159


>gi|59711641|ref|YP_204417.1| hypothetical protein VF_1034 [Vibrio fischeri ES114]
 gi|59479742|gb|AAW85529.1| conserved protein [Vibrio fischeri ES114]
          Length = 279

 Score = 64.8 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 5/97 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H++ S  +G LS   ++++  +     +AITD +++    E           +Q I 
Sbjct: 5   LHSHTTAS--DGRLSPTELVERAVSFDVKVLAITDHDSVAGLDEAHAAIKDQNLPLQLIN 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           G ++   +  N  +   G       P ++ L+   E 
Sbjct: 63  GIEIS-TLWSNKDIHVVGLNLDIHHPDLIELIKNQEA 98


>gi|225174594|ref|ZP_03728592.1| PHP domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169721|gb|EEG78517.1| PHP domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 279

 Score = 64.8 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH+  S  +G  +   ++ +       AIAITD + +    E    A    I    G 
Sbjct: 7  LHVHTQAS--DGVYTPREVVARARRLGLDAIAITDHDTVDGIAEALSAAKEQRITVFPGV 64

Query: 74 QLDIDMQDN 82
          +L  +  D 
Sbjct: 65 ELSTEYNDR 73


>gi|15602481|ref|NP_245553.1| hypothetical protein PM0616 [Pasteurella multocida subsp.
          multocida str. Pm70]
 gi|12720889|gb|AAK02700.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 277

 Score = 64.8 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++ +        +A+TD +      E    A    +  I G 
Sbjct: 7  LHCHSTAS--DGVLSPTEVVARAVEKGVNVLALTDHDTTAGLAEARLAAQQTDLTLISGV 64

Query: 74 QLDIDMQDN 82
          ++    ++ 
Sbjct: 65 EISTTWENR 73


>gi|302386094|ref|YP_003821916.1| PHP domain protein [Clostridium saccharolyticum WM1]
 gi|302196722|gb|ADL04293.1| PHP domain protein [Clostridium saccharolyticum WM1]
          Length = 284

 Score = 64.8 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          FV L VHS+ S  +G L+ + ++   A +   AIA+TD + +    E    A    I+ I
Sbjct: 3  FVDLHVHSNAS--DGTLTPSQVVALAAENNLGAIALTDHDTIDGLSEAQAAASGLPIEII 60

Query: 71 IGCQLDIDMQDN 82
           G +L    Q  
Sbjct: 61 PGIELSCVYQGE 72


>gi|68250081|ref|YP_249193.1| TrpH [Haemophilus influenzae 86-028NP]
 gi|145632848|ref|ZP_01788581.1| TrpH [Haemophilus influenzae 3655]
 gi|145634285|ref|ZP_01789995.1| TrpH [Haemophilus influenzae PittAA]
 gi|68058280|gb|AAX88533.1| TrpH [Haemophilus influenzae 86-028NP]
 gi|144986504|gb|EDJ93070.1| TrpH [Haemophilus influenzae 3655]
 gi|145268265|gb|EDK08259.1| TrpH [Haemophilus influenzae PittAA]
          Length = 274

 Score = 64.8 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + K      L  HS+ S  +G LS   ++ +  A     +A+ D + +    E    A  
Sbjct: 1   MTKKYD---LHCHSTAS--DGVLSPTELVHRAYAQGVNVLALCDHDTIVGIDEAEITAKE 55

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
            GI+ I G ++     +   +   G     T P +  L+ + +  +
Sbjct: 56  VGIELITGVEIS-TNWEGRGIHIVGLNFDKTHPKMTALLQSQKALR 100


>gi|170722952|ref|YP_001750640.1| phosphotransferase domain-containing protein [Pseudomonas putida
          W619]
 gi|169760955|gb|ACA74271.1| PHP domain protein [Pseudomonas putida W619]
          Length = 286

 Score = 64.8 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +GAL+   ++ +        +A+TD + L    E  Q     G++ + G 
Sbjct: 5  LHCHSTAS--DGALAPAVLVARAQEHGVQTLALTDHDTLEGLPEARQACVERGMRWVSGV 62

Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSI 99
          +L                P    P +
Sbjct: 63 ELSCTWGGATIHVLGYDFPLEAPPLL 88


>gi|110801623|ref|YP_698414.1| metal-dependent phosphoesterase [Clostridium perfringens SM101]
 gi|110682124|gb|ABG85494.1| conserved hypothetical protein [Clostridium perfringens SM101]
          Length = 314

 Score = 64.8 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 12  VHLQVHSSYSLL--EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
                HS    L  +G LS   ++ +        IA+TD +      E  + A    IQ 
Sbjct: 39  AEFHCHS----LASDGTLSPKEVVAEAKKSGISLIALTDHDITSGLDEAKEAAKELDIQF 94

Query: 70  IIGCQLD 76
           I G +L 
Sbjct: 95  IPGIELS 101


>gi|110799839|ref|YP_695716.1| hypothetical protein CPF_1270 [Clostridium perfringens ATCC
          13124]
 gi|110674486|gb|ABG83473.1| conserved hypothetical protein [Clostridium perfringens ATCC
          13124]
          Length = 280

 Score = 64.8 bits (156), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 12 VHLQVHSSYSLL--EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
               HS    L  +G LS   ++ +        IA+TD +      E  + A    IQ 
Sbjct: 5  AEFHCHS----LASDGTLSPKEVIAEAKKAGISLIALTDHDITSGLDEAKKAAKELDIQF 60

Query: 70 IIGCQLD 76
          I G +L 
Sbjct: 61 IPGIELS 67


>gi|302391015|ref|YP_003826835.1| PHP domain protein [Acetohalobium arabaticum DSM 5501]
 gi|302203092|gb|ADL11770.1| PHP domain protein [Acetohalobium arabaticum DSM 5501]
          Length = 451

 Score = 64.4 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H++ S  +G+ +   +++K        IA+TD + +         A    ++ I G 
Sbjct: 6  LHLHTTAS--DGSYTPEELVEKAVGMGLETIAVTDHDTVGGVAPALTAAKEVDLEVIPGV 63

Query: 74 QLD 76
          +  
Sbjct: 64 EFT 66


>gi|119489615|ref|ZP_01622375.1| hypothetical protein L8106_08401 [Lyngbya sp. PCC 8106]
 gi|119454527|gb|EAW35675.1| hypothetical protein L8106_08401 [Lyngbya sp. PCC 8106]
          Length = 273

 Score = 64.4 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
           L  H++YS  +G L+ + ++         A+AITD + L  
Sbjct: 3  ELHCHTTYS--DGTLAPSELVASAIQAGVKALAITDHDTLSG 42


>gi|56750020|ref|YP_170721.1| hypothetical protein syc0011_d [Synechococcus elongatus PCC 6301]
 gi|81300362|ref|YP_400570.1| phosphoesterase PHP-like [Synechococcus elongatus PCC 7942]
 gi|56684979|dbj|BAD78201.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81169243|gb|ABB57583.1| Phosphoesterase PHP-like [Synechococcus elongatus PCC 7942]
          Length = 297

 Score = 64.4 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 7/72 (9%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP--I 70
           L  H++YS  +G+LS   +++   A    A+AITD + L     +++   AAG +   +
Sbjct: 30 ELHTHTTYS--DGSLSPTELVEAAIAAGVTALAITDHDTLGG---WTEAIAAAGDRLEIV 84

Query: 71 IGCQLDIDMQDN 82
           G +L     D 
Sbjct: 85 PGIELSTLHNDR 96


>gi|317125691|ref|YP_004099803.1| PHP domain protein [Intrasporangium calvum DSM 43043]
 gi|315589779|gb|ADU49076.1| PHP domain protein [Intrasporangium calvum DSM 43043]
          Length = 305

 Score = 64.4 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  + + ++          +AITD + +    E  Q A   G+  + G 
Sbjct: 27 LHTHSTAS--DGTDTPSELVAAAQQAGIDVLAITDHDTVAGWAEAEQAARHLGVTLVRGI 84

Query: 74 QLDIDMQD 81
          ++      
Sbjct: 85 EVSTAYGH 92


>gi|323144450|ref|ZP_08079053.1| PHP domain protein [Succinatimonas hippei YIT 12066]
 gi|322415765|gb|EFY06496.1| PHP domain protein [Succinatimonas hippei YIT 12066]
          Length = 281

 Score = 64.4 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG-IQ 68
           SF+ L  H++ S  +GALS   ++D+    +   +AITD + +   ++ +Q A A G I 
Sbjct: 2   SFIDLHCHTNAS--DGALSPEGVVDRAVNYKLTHLAITDHDTVNG-IKAAQAA-ACGRIC 57

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
            I G ++    Q                  + L
Sbjct: 58  VIPGIEISTTWQHQQIHIVGLFINPECSYMLNL 90


>gi|160881560|ref|YP_001560528.1| phosphotransferase domain-containing protein [Clostridium
          phytofermentans ISDg]
 gi|160430226|gb|ABX43789.1| PHP domain protein [Clostridium phytofermentans ISDg]
          Length = 287

 Score = 64.4 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA---CAAG- 66
          +V L VH++ S  +G L+   +++     +  AIAITD + ++   E  + A      G 
Sbjct: 3  YVDLHVHTNVS--DGTLTPTEVVNLAVQKKLAAIAITDHDTIYGIEEAKRAALAQRENGY 60

Query: 67 -IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
           ++ I G ++         +   G       P +
Sbjct: 61 ELELISGVEIS-AEYKKKDIHILGLFVNEKDPHL 93


>gi|149376753|ref|ZP_01894511.1| hypothetical protein MDG893_00310 [Marinobacter algicola DG893]
 gi|149358992|gb|EDM47458.1| hypothetical protein MDG893_00310 [Marinobacter algicola DG893]
          Length = 292

 Score = 64.4 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H++ S  +GAL    ++ +  A     +AITD + +    E S+ A  AG+  I G 
Sbjct: 13 LHCHTTAS--DGALPPKELVARAHARGVTHLAITDHDTIAGLEEASEAAREAGLTLIAGT 70

Query: 74 QLDIDMQDNLKMTNQGKTPFPT 95
          +L    + +             
Sbjct: 71 ELSCLWKSHTIHVVGLDFDVDD 92


>gi|256825729|ref|YP_003149689.1| putative metal-dependent phosphoesterase, PHP family [Kytococcus
          sedentarius DSM 20547]
 gi|256689122|gb|ACV06924.1| predicted metal-dependent phosphoesterase, PHP family [Kytococcus
          sedentarius DSM 20547]
          Length = 283

 Score = 64.4 bits (155), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            HS+ S  +G  +   ++   A     A+A+TD +     +E      A G+Q + G +
Sbjct: 12 HTHSAAS--DGTQAPAELVRTAAELGLGAVALTDHDTTSGWVEALAAGEALGVQVLGGIE 69

Query: 75 LD 76
          + 
Sbjct: 70 VS 71


>gi|73668938|ref|YP_304953.1| hypothetical protein Mbar_A1414 [Methanosarcina barkeri str.
           Fusaro]
 gi|72396100|gb|AAZ70373.1| hypothetical protein Mbar_A1414 [Methanosarcina barkeri str.
           Fusaro]
          Length = 214

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 69/211 (32%), Gaps = 53/211 (25%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--SQKACAAGIQPII 71
           L +HS YS  +G L    I           IAITD N +   L+    +       + II
Sbjct: 6   LHLHSKYS-SDGILDPKTITKVAIRRGLNGIAITDHNTIKGGLKAKEYET---KNFKVII 61

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G ++  +  + + +    +                     LIE++S +   +        
Sbjct: 62  GSEIMTNNGEVIGLFLSEEIRSTD----------------LIEVISTIKAQN-------- 97

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
                      G++++          A +    +     L+   + F  R          
Sbjct: 98  -----------GIVVIPHPFDKMRHSALYPTDEE---AHLIDCIEGFNSRCIF------- 136

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
             +    + V+ A  H LPLVA +++ F +E
Sbjct: 137 --QKYNDKAVEYANKHNLPLVAGSDAHFANE 165


>gi|303248922|ref|ZP_07335169.1| PHP domain protein [Desulfovibrio fructosovorans JJ]
 gi|302489645|gb|EFL49581.1| PHP domain protein [Desulfovibrio fructosovorans JJ]
          Length = 300

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 2/90 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  +  +++   A     A+A+TD + L    E        G+  + G 
Sbjct: 6   LHTHSTAS--DGTFAPGDLVALAAQKNLAAVALTDHDTLEGLAEARTAGERYGVDVVSGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           +L +   D          P    P    L 
Sbjct: 64  ELSVADGDRSVHLVGLFLPDAPGPLAEALA 93


>gi|221633699|ref|YP_002522925.1| putative PHP domain [Thermomicrobium roseum DSM 5159]
 gi|221155453|gb|ACM04580.1| putative PHP domain [Thermomicrobium roseum DSM 5159]
          Length = 285

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 49/170 (28%), Gaps = 26/170 (15%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H++ S  +G LS   +++  A      + ITD + +         A    ++ + G 
Sbjct: 6   LHTHTTAS--DGILSPEELVELAAVRGIEVLGITDHDTVAGLPAAQSAAAHRSVKIVPGI 63

Query: 74  QLDIDMQDNLKMTNQ---GKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
           +L   ++                     +  L +                     +   R
Sbjct: 64  ELSTAVETGEVHILGYFIDPADPVLQAHLASLAT--------------ARRERAQRMVDR 109

Query: 131 -------ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
                  + +  L+ I   G I     +   + R F  +  +  E+ L  
Sbjct: 110 LRQLGIPVTMEDLEAIAQGGTITRAHAARLLVARGFAGSIDEAFERFLGR 159


>gi|255103312|ref|ZP_05332289.1| DNA polymerase III, alpha subunit [Clostridium difficile QCD-63q42]
          Length = 346

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 86/185 (46%), Gaps = 7/185 (3%)

Query: 725 MDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYP 784
           M +   +  +   K   ++    + ++++   A Y FN SH+ +YA  S   A++K+HYP
Sbjct: 1   MKEFHIKLKNNWIKKVGTENNFEDTWQVVNDAASYSFNASHSLSYAYDSLYCAYLKSHYP 60

Query: 785 VEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVD--FKVGDNRIYYSLAAI 842
           +E+   +  L  ++ E+ +K   +   F+I++  P       +  F    N IY  + +I
Sbjct: 61  LEYYTVAFNLYNEDTERTRKLTDEIEYFSIKLENPKFRFSKSEYFFNRDTNSIYKGIESI 120

Query: 843 KGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK-LNRRVLESLVFAGALDCFGYSRMQL 901
           K + +    ++     D  +DS  +    +D +  +N + L  L+     + FG S  +L
Sbjct: 121 KFLNSDIGEYLYSL-KDNKYDSFLELL--IDLQGHINSKQLSILIKLDFFEEFGKS-NKL 176

Query: 902 LQSLD 906
           L++ D
Sbjct: 177 LETYD 181


>gi|330433206|gb|AEC18265.1| DNA polymerase III PolC [Gallibacterium anatis UMN179]
          Length = 279

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++ +        +A+TD + +    E    A    I  I G 
Sbjct: 14 LHSHSNAS--DGVLSPTALISRAKEQGIEVLALTDHDTVDGIAEAKTAAQQQQITLISGV 71

Query: 74 QLD 76
          ++ 
Sbjct: 72 EIS 74


>gi|218780517|ref|YP_002431835.1| nucleic acid binding OB-fold tRNA/helicase-type [Desulfatibacillum
            alkenivorans AK-01]
 gi|218761901|gb|ACL04367.1| nucleic acid binding OB-fold tRNA/helicase-type [Desulfatibacillum
            alkenivorans AK-01]
          Length = 108

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 8/56 (14%), Positives = 20/56 (35%)

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + G    +       G  ++    V+      T+ G R+ ++T  +    ++   F
Sbjct: 7    EKGCMESDRIRWCEDGRYVKACGRVIIIHTPPTKSGKRVMFITLEDARGLFDVTVF 62


>gi|147920138|ref|YP_686098.1| metal-dependent phosphoesterase [uncultured methanogenic archaeon
          RC-I]
 gi|110621494|emb|CAJ36772.1| putative metal-dependent phosphoesterase (PHP family) [uncultured
          methanogenic archaeon RC-I]
          Length = 220

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          L VHS+YS  +G  S+  IL    A     +AITD +    
Sbjct: 6  LHVHSNYSP-DGHSSVEEILKAAKARGLDGVAITDHDTTAG 45


>gi|320353939|ref|YP_004195278.1| PHP domain-containing protein [Desulfobulbus propionicus DSM 2032]
 gi|320122441|gb|ADW17987.1| PHP domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 287

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 31/178 (17%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS YS  +G+ +   +++   A+    +A+TD + +    E  +    AG+  + G 
Sbjct: 5   LHTHSVYS--DGSSTPAELIELAVANGISGLALTDHDTVEGVAEVKRLGEQAGLSVLTGV 62

Query: 74  QLDIDMQDN-LKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
           ++   ++ + L +   G           LL                  L    ++   I 
Sbjct: 63  EISTTLRQHTLHILGYGIDADDPQLHRWLLP-----------------LQQGRERRNAII 105

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT-----FKKLFGDRLYVN 185
           L  L+ +G    I +T      I R        +A   +       F+  F  RLY+ 
Sbjct: 106 LDKLRGLG----IDITAEEIQEISRCGQTGRPHIARLLVAKGVVDSFEAAF--RLYLG 157


>gi|258647015|ref|ZP_05734484.1| DNA polymerase III, alpha subunit [Dialister invisus DSM 15470]
 gi|260404455|gb|EEW98002.1| DNA polymerase III, alpha subunit [Dialister invisus DSM 15470]
          Length = 901

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 76/610 (12%), Positives = 159/610 (26%), Gaps = 41/610 (6%)

Query: 277 IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
             +     + +    + +  +        E E         G        A+      + 
Sbjct: 294 YVKAAKPTIFLGLFPIIKQGDPVEMGTNHEHEEVYDKL---GKLCYDRAHAVYGDPLPEI 350

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
            + RL  EL  I    +S  F      +Q++     P G  R S   S  A+   IT+I+
Sbjct: 351 VKDRLRLELKFIQDNGYSTIFYTAHKLVQYSNDGGHPAG-VRDSLGSSFVAFMSGITEIN 409

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFG------ 450
           PL    +  +       +       F     +              +   + FG      
Sbjct: 410 PLPSHYVCPKCHWNHFYTDGSVGSGFDLPDHNCPECGTLLYKDGHNIPYSVLFGLDGTNI 469

Query: 451 -----SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLAD 505
                     A L +V + ++    +   LC      P     L+               
Sbjct: 470 KGFGLVFVQDAGLAEVYKYMEKLLGREHVLCYGDKLIPGSEKFLKYPDVYKWLNAKDRRW 529

Query: 506 PSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEK 565
           P+   +      +       + +    +     L  L  +             ++     
Sbjct: 530 PANSTVRFNYHSIMDDMLSLTMNGNDALTMVHELQNLTGINPQSIPFNDARALSV----- 584

Query: 566 AGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLES 625
                 D LG+ T + L   +         + L               T    G+ +   
Sbjct: 585 --FCSTDALGI-TPSKLADVIVNGKVTVGTLGLPG-----------YGTPFARGVLEDVQ 630

Query: 626 SGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS-IHPLIDPMLKE 684
                 L  +        + + +       D + +       ++ +   IH  ++ +   
Sbjct: 631 PKNFSELVKVSGFRYGTGVWVNNARELIKNDTVKIEEVISTREDVMNYLIHHGVESLTSF 690

Query: 685 TQGVIIYQEQVMQI--AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGIS 742
           T    + + + ++   +  L+    +           KI+    K    F +  +     
Sbjct: 691 TVMENVRKGKGIESKGSNHLAELEAAHVPQWFIDSCLKIRYLPPKAPPIFSAMTALR--- 747

Query: 743 KTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKI 802
                    L    A +      A    VI    A  K           +T    +   +
Sbjct: 748 IAWFKVYHPLAYYAAYFTVYAGGAFNATVILNGLASQKQELARIAALKHLTAVDKDNAAV 807

Query: 803 KKFCQDARQFNIQIMPPSVNTPCVD-FKVGDNRIYYSLAAIKGVGTTTARHIMEASADKP 861
            +   +     ++ +P S+       FK+ D ++  S   I  +G   A  I++   +  
Sbjct: 808 IEVAAEMYLRGMEFLPISLEKSEATAFKIEDGKLLPSFNCIPALGNAAAGEIVKVRNEHL 867

Query: 862 FDSLEDFCSR 871
           F S  D   R
Sbjct: 868 FTSKADLKKR 877


>gi|170717599|ref|YP_001784682.1| phosphotransferase domain-containing protein [Haemophilus somnus
          2336]
 gi|168825728|gb|ACA31099.1| PHP domain protein [Haemophilus somnus 2336]
          Length = 275

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  S+ +G LS   I+ +        +A+TD + +    +   +A   GI  I G 
Sbjct: 7  LHCHS--SISDGTLSPQEIVIRAHQQGVNVLALTDHDTIAGLSQARTQAEQLGISLINGV 64

Query: 74 QLDIDMQD 81
          ++    ++
Sbjct: 65 EISTSWEN 72


>gi|88601691|ref|YP_501869.1| PHP-like protein [Methanospirillum hungatei JF-1]
 gi|88187153|gb|ABD40150.1| PHP-like protein [Methanospirillum hungatei JF-1]
          Length = 227

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 69/206 (33%), Gaps = 56/206 (27%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS YS  +  LS  NI+ +    +   IAITD N +   LE  +    + I  I+G 
Sbjct: 5   LHIHSKYSF-DSFLSPKNIIKEAKKHKIDVIAITDHNTIRGGLETLRINLDSKISVIVGS 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++  ++ D + +                                  YL ++ K   R+ L
Sbjct: 64  EIHTEIGDIIGL----------------------------------YLNEEIKS--RLSL 87

Query: 134 SWLQEIGTE-GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
             + EI ++ G+++L     G        N     E        +F  R           
Sbjct: 88  DVIDEIKSQGGIVVLPHPFRGHNLNEKLINQCDAIE--------IFNSR----------S 129

Query: 193 DRYRESQVVQLAYTHELPLVATNNSL 218
                   ++LA     P  A +++ 
Sbjct: 130 SEIENQLSLELAKQFNKPFTAGSDAH 155


>gi|134095365|ref|YP_001100440.1| phosphoesterase PHP, N-terminal [Herminiimonas arsenicoxydans]
 gi|133739268|emb|CAL62317.1| Putative metal-dependent phosphoesterases (PHP family)
          [Herminiimonas arsenicoxydans]
          Length = 276

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS++S  +G L+  ++  +  A      A+TD + +    E    A A  +  + G 
Sbjct: 6  LHSHSNFS--DGTLTPADLAARAKAHGVDVWAMTDHDEVSGIAEARVAATALDLPFVSGV 63

Query: 74 QLDIDM 79
          ++ I  
Sbjct: 64 EISITW 69


>gi|326791646|ref|YP_004309467.1| PHP domain protein [Clostridium lentocellum DSM 5427]
 gi|326542410|gb|ADZ84269.1| PHP domain protein [Clostridium lentocellum DSM 5427]
          Length = 284

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          L VHS+ S  +G LS   I     A    AIA+TD + +        +    G+
Sbjct: 6  LHVHSTAS--DGTLSPQEIALYAKAKGLSAIALTDHDTVAGV----NECMKKGL 53


>gi|289759529|ref|ZP_06518907.1| DNA polymerase subunit III (alpha) dnaE2 [Mycobacterium
          tuberculosis T85]
 gi|289715093|gb|EFD79105.1| DNA polymerase subunit III (alpha) dnaE2 [Mycobacterium
          tuberculosis T85]
          Length = 131

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 7  KSPSFVHLQVHSSYSLLEGALSLNNILDKIA 37
           S ++  L  HS+YS L+GA +   ++++ A
Sbjct: 54 SSVAYAELHAHSAYSFLDGASTPEELVEEAA 84


>gi|215447692|ref|ZP_03434444.1| error-prone DNA polymerase [Mycobacterium tuberculosis T85]
          Length = 116

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 7  KSPSFVHLQVHSSYSLLEGALSLNNILDKIA 37
           S ++  L  HS+YS L+GA +   ++++ A
Sbjct: 39 SSVAYAELHAHSAYSFLDGASTPEELVEEAA 69


>gi|56478936|ref|YP_160525.1| metal-dependent phosphoesterase [Aromatoleum aromaticum EbN1]
 gi|56314979|emb|CAI09624.1| predicted metal-dependent phosphoesterases (PHP family)
           [Aromatoleum aromaticum EbN1]
          Length = 276

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L+   ++ + AA+    +A+TD + +    E    A   GI+ + G 
Sbjct: 5   LHCHSTMS--DGWLAPAEVVRRAAANGVTLLALTDHDEVGGLDEAIATAAEVGIRLVPGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVL-LVSTAEG 108
           ++ +       +   G       P ++  L     G
Sbjct: 63  EISVSF-SGETVHVVGLGIDHRHPRLLAGLAEVRAG 97


>gi|317472374|ref|ZP_07931699.1| PHP domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316900094|gb|EFV22083.1| PHP domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 296

 Score = 63.7 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----QKACAAGIQP 69
          L +HS YS  +G      ++ K   +    +AI D N     +       + A   GI  
Sbjct: 4  LHMHSYYSD-DGEFQPEELVQKCKEEGIRYMAIADHN----CVRAVEKGRKAAQKEGIHF 58

Query: 70 IIGCQLDIDMQD 81
          I G ++D   Q 
Sbjct: 59 ISGVEIDCTFQG 70


>gi|254236162|ref|ZP_04929485.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126168093|gb|EAZ53604.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 295

 Score = 63.7 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 2/84 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G L+   ++ +        +A+TD + L    E  Q A   GI+ + G 
Sbjct: 5  LHCHSTAS--DGVLAPAALVQRAHEKGVGLLALTDHDTLEGLPEAHQAAARLGIELVNGV 62

Query: 74 QLDIDMQDNLKMTNQGKTPFPTVP 97
          +L                     P
Sbjct: 63 ELSCTWGGATIHVLGYGFDLDAAP 86


>gi|15598396|ref|NP_251890.1| hypothetical protein PA3200 [Pseudomonas aeruginosa PAO1]
 gi|9949320|gb|AAG06588.1|AE004744_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 295

 Score = 63.7 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 2/84 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G L+   ++ +        +A+TD + L    E  Q A   GI+ + G 
Sbjct: 5  LHCHSTAS--DGVLAPAALVQRAHEKGVGLLALTDHDTLEGLPEAHQAAARLGIELVNGV 62

Query: 74 QLDIDMQDNLKMTNQGKTPFPTVP 97
          +L                     P
Sbjct: 63 ELSCTWGGATIHVLGYGFDLDAAP 86


>gi|296388313|ref|ZP_06877788.1| putative PHP domain protein [Pseudomonas aeruginosa PAb1]
 gi|313108517|ref|ZP_07794518.1| putative PHP domain-containing protein [Pseudomonas aeruginosa
          39016]
 gi|310881020|gb|EFQ39614.1| putative PHP domain-containing protein [Pseudomonas aeruginosa
          39016]
          Length = 295

 Score = 63.7 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 2/84 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G L+   ++ +        +A+TD + L    E  Q A   GI+ + G 
Sbjct: 5  LHCHSTAS--DGVLAPAALVQRAHEKGVGLLALTDHDTLEGLPEAHQAAARLGIELVNGV 62

Query: 74 QLDIDMQDNLKMTNQGKTPFPTVP 97
          +L                     P
Sbjct: 63 ELSCTWGGATIHVLGYGFDLDAAP 86


>gi|88856775|ref|ZP_01131429.1| hypothetical protein A20C1_13211 [marine actinobacterium PHSC20C1]
 gi|88813943|gb|EAR23811.1| hypothetical protein A20C1_13211 [marine actinobacterium PHSC20C1]
          Length = 286

 Score = 63.7 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 62/179 (34%), Gaps = 9/179 (5%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +  +P  + L  HS+ S  +G  +   ++   A      +AITD ++     E    A  
Sbjct: 1   MPNTP--IDLHTHSAVS--DGTETPTQLIRSAARAGLGTVAITDHDSTAGWQEAIAAASV 56

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQ 124
           +GI  I G +L  +                    +       +G  RL        ++++
Sbjct: 57  SGINVIPGMELSTNYGPASVHVLAYLFDPLNRTIVTETARIRDG--RLRR---AERIVEK 111

Query: 125 GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
             Q   +    +    ++G  +     +  + R     +   A + +L ++  + ++ Y
Sbjct: 112 ISQDYDLTWDDVLAESSDGTTLGRPHIADALVRKGHVVNRSAAFESILHWQGGYYEKYY 170


>gi|189500798|ref|YP_001960268.1| PHP domain-containing protein [Chlorobium phaeobacteroides BS1]
 gi|189496239|gb|ACE04787.1| PHP domain protein [Chlorobium phaeobacteroides BS1]
          Length = 286

 Score = 63.7 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G  +   I++K       AI+ITD +++    E    A   GI+ I G 
Sbjct: 18 LHIHTKCS--DGVFTPEEIVEKAKKTGLKAISITDHDSVLGIDEAKPLAIEYGIELITGV 75

Query: 74 QLDIDMQDN 82
          ++    Q +
Sbjct: 76 EMSSTYQGH 84


>gi|307546302|ref|YP_003898781.1| hypothetical protein HELO_3712 [Halomonas elongata DSM 2581]
 gi|307218326|emb|CBV43596.1| K07053 [Halomonas elongata DSM 2581]
          Length = 320

 Score = 63.7 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+ S  +GALS   +++  AA     +A+TD + +             G+  + G 
Sbjct: 37 LHMHSTAS--DGALSPEALVEACAARGLTHMALTDHDTVAGVERARAAGERHGVVVLPGT 94

Query: 74 QLD 76
          +L 
Sbjct: 95 ELS 97


>gi|110596846|ref|ZP_01385136.1| PHP-like [Chlorobium ferrooxidans DSM 13031]
 gi|110341533|gb|EAT59993.1| PHP-like [Chlorobium ferrooxidans DSM 13031]
          Length = 286

 Score = 63.7 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G  +   I++K AA    AI+ITD +++    +    A A GI+ + G 
Sbjct: 18 LHIHTKCS--DGLYTPEEIVEKAAAAGLKAISITDHDSVSGIDKAKPLALAKGIELVPGV 75

Query: 74 QLD 76
          ++ 
Sbjct: 76 EMS 78


>gi|294791399|ref|ZP_06756556.1| putative PHP domain protein [Scardovia inopinata F0304]
 gi|294457870|gb|EFG26224.1| putative PHP domain protein [Scardovia inopinata F0304]
          Length = 285

 Score = 63.7 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 10/99 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI----QP 69
           L  H+ YS  +G  +   ++ +        +AITD +   S     Q A AA +      
Sbjct: 8   LHCHTVYS--DGTCTPQELISQAQQKGLAGVAITDHDTTSS----WQPAKAASLSDKYPL 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           I G ++  +                   ++ L   T + 
Sbjct: 62  IRGTEITAEAGKTSVHVLAYLYDCEDKAALELFARTRQA 100


>gi|219870305|ref|YP_002474680.1| metal-dependent phosphoesterase [Haemophilus parasuis SH0165]
 gi|219690509|gb|ACL31732.1| metal-dependent phosphoesterase [Haemophilus parasuis SH0165]
          Length = 273

 Score = 63.7 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 2/91 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L+   ++ +        +A+TD + +    E    A    +  I G 
Sbjct: 5   LHSHSTAS--DGVLTPTELVKRAVEQGVTMLALTDHDTVAGIAEAKTFAQNQPLTFISGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS 104
           ++ +  +                  + LL  
Sbjct: 63  EISVLWEGKSLHLTALNIDETHPAVVNLLAR 93


>gi|107102730|ref|ZP_01366648.1| hypothetical protein PaerPA_01003797 [Pseudomonas aeruginosa
          PACS2]
 gi|218890607|ref|YP_002439471.1| putative PHP domain protein [Pseudomonas aeruginosa LESB58]
 gi|254241888|ref|ZP_04935210.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126195266|gb|EAZ59329.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218770830|emb|CAW26595.1| putative PHP domain protein [Pseudomonas aeruginosa LESB58]
          Length = 295

 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 2/84 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G L+   ++ +        +A+TD + L    E  Q A   GI+ + G 
Sbjct: 5  LHCHSTAS--DGVLAPAALVQRAHEKGVGLLALTDHDTLEGLPEAHQAAARLGIELVNGI 62

Query: 74 QLDIDMQDNLKMTNQGKTPFPTVP 97
          +L                     P
Sbjct: 63 ELSCTWGGATIHVLGYGFDLDAAP 86


>gi|18309997|ref|NP_561931.1| hypothetical protein CPE1015 [Clostridium perfringens str. 13]
 gi|18144676|dbj|BAB80721.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 280

 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 12 VHLQVHSSYSLL--EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
               HS    L  +G LS   ++ +        IA+TD +      E  + A    IQ 
Sbjct: 5  AEFHCHS----LASDGTLSPKEVIAEAKKSGISLIALTDHDITSGLDEAKEAAKELDIQF 60

Query: 70 IIGCQLD 76
          I G +L 
Sbjct: 61 IPGIELS 67


>gi|307297798|ref|ZP_07577604.1| PHP domain protein [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306917058|gb|EFN47440.1| PHP domain protein [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 280

 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          FV    HS +S  +G  S+  I+ K A      +++TD + L    E  +    AGI+ I
Sbjct: 2  FVDFHCHSDHS--DGTDSVAAIVQKAANKGISILSVTDHDTLAGQNEARELCLRAGIKYI 59

Query: 71 IGCQLDIDMQDNLKMTNQG 89
           G ++  D  + L +   G
Sbjct: 60 RGVEISCDFHETLDVLGYG 78


>gi|169842583|ref|ZP_02875688.1| DNA polymerase III, subunit alpha [candidate division TM7
           single-cell isolate TM7a]
          Length = 58

 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
              RI    L+E   EGL++L+  +SG I      ++ + A++    +K +
Sbjct: 1   YKPRIDHEILEEY-NEGLLVLSACASGEIGENLRDDNYEEAKRIASWYKSV 50


>gi|257458195|ref|ZP_05623349.1| DNA polymerase III subunit alpha [Treponema vincentii ATCC 35580]
 gi|257444489|gb|EEV19578.1| DNA polymerase III subunit alpha [Treponema vincentii ATCC 35580]
          Length = 153

 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 71/163 (43%), Positives = 94/163 (57%), Gaps = 10/163 (6%)

Query: 245 RPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQ 304
               T   YLK+  EM  +F   PE L NT  IA RC+F +    P+LP +   E     
Sbjct: 1   MKFETDQFYLKSAEEMEKLFPGYPEMLSNTCRIAERCNFEIPQPGPLLPVYQIPEDF--- 57

Query: 305 KEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFI 364
             +E  + +    GL+              ++  +R ++EL +I +M F GYFLIV DFI
Sbjct: 58  ATKEEYITHLVQEGLKK-------RYNPVTEEMTKRAEYELGIIMKMDFVGYFLIVWDFI 110

Query: 365 QWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERF 407
            WAK++ IPVGPGRGSGAGS+ AYA+ ITDIDPL++ LLFERF
Sbjct: 111 NWAKEHGIPVGPGRGSGAGSIVAYAMRITDIDPLKYKLLFERF 153


>gi|294495841|ref|YP_003542334.1| PHP domain protein [Methanohalophilus mahii DSM 5219]
 gi|292666840|gb|ADE36689.1| PHP domain protein [Methanohalophilus mahii DSM 5219]
          Length = 286

 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 2/90 (2%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             HS YS  +G LS  +++ + A      I +TD + L   L         G++ I G +
Sbjct: 6   HTHSFYS--DGTLSPEDLVKEAAEVGLKYICLTDHDTLDGVLSIGDTKSRYGVELIPGVE 63

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVS 104
           L                         +L  
Sbjct: 64  LTTRYAGMDFHILGMGIDVKDTKLKTVLAK 93


>gi|218134196|ref|ZP_03463000.1| hypothetical protein BACPEC_02086 [Bacteroides pectinophilus ATCC
          43243]
 gi|217991571|gb|EEC57577.1| hypothetical protein BACPEC_02086 [Bacteroides pectinophilus ATCC
          43243]
          Length = 105

 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VHS+YS  +G  +   ++D+       A+A+TD +      +    +    ++ I G 
Sbjct: 6  LHVHSTYS--DGTFTPKMLIDEAVRKGLSAMALTDHDTTDGIDDARLASAGTNVELIPGI 63

Query: 74 QLD 76
          +L 
Sbjct: 64 ELS 66


>gi|83644950|ref|YP_433385.1| metal-dependent phosphoesterase [Hahella chejuensis KCTC 2396]
 gi|83632993|gb|ABC28960.1| predicted metal-dependent phosphoesterases (PHP family) [Hahella
           chejuensis KCTC 2396]
          Length = 286

 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 4/91 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA--CAAGIQPII 71
           L  H++ S  +G+ S   +L+   +    A+AITD + +  A      +     GI+ I 
Sbjct: 10  LHCHTTAS--DGSRSPAELLELAVSRGLTALAITDHDTVEGARSLMNASLDKKQGIRLIT 67

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           G +     Q                    LL
Sbjct: 68  GAEFSCLWQGMTLHMLAFGFDLDGSEVATLL 98


>gi|254519453|ref|ZP_05131509.1| phosphotransferase domain-containing protein [Clostridium sp.
          7_2_43FAA]
 gi|226913202|gb|EEH98403.1| phosphotransferase domain-containing protein [Clostridium sp.
          7_2_43FAA]
          Length = 274

 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 10/74 (13%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA---GI 67
          +  L +HSSYS  +G+++   I+DK  +    +I+ITD +++      SQ         I
Sbjct: 3  YADLHIHSSYS--DGSMTPEEIVDKAKSLGVKSISITDHDSIA-----SQYIIKNDYKDI 55

Query: 68 QPIIGCQLDIDMQD 81
            I G +L  +  D
Sbjct: 56 NIISGIELSTEYDD 69


>gi|330939569|gb|EGH42886.1| phosphoesterase PHP [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 287

 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +GALS   ++ +   +    +++TD + L    E    A + G+Q + G 
Sbjct: 5  LHCHSTAS--DGALSPTALVTRAHENGVRVLSLTDHDTLEGLEEAHAAAHSLGMQLVNGV 62

Query: 74 QLDIDMQD 81
          +L      
Sbjct: 63 ELSCTWGG 70


>gi|159036340|ref|YP_001535593.1| phosphotransferase domain-containing protein [Salinispora arenicola
           CNS-205]
 gi|157915175|gb|ABV96602.1| PHP domain protein [Salinispora arenicola CNS-205]
          Length = 284

 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 62/203 (30%), Gaps = 20/203 (9%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS---ALEFSQKACAAGIQPI 70
           L  HS+ S  +G L+   ++    A     +AITD +       A+     A  AG++ +
Sbjct: 7   LHTHSTAS--DGTLTPAELVHAAGAAGLDVVAITDHDTTAGWEPAVR----ALPAGLRLV 60

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
            G +L                 +   P    L         L   V     +   +    
Sbjct: 61  RGAELSCRWYGEDPAVPLHLLAYLFDPDAPDLA------AELSR-VRHARTVRGERTVRL 113

Query: 131 ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           +    ++   +E   +L G   G + R     +   A     T ++ FG        R  
Sbjct: 114 LQADGIEVSWSE---ILAGARGGTVGRPHIAQALIRAGLVATT-REAFGPDWLGERYRLP 169

Query: 191 GYDRYRESQVVQLAYTHELPLVA 213
             D      V  +     +P+ A
Sbjct: 170 KDDIEVFQAVRLVRAAGGVPVFA 192


>gi|118579101|ref|YP_900351.1| phosphotransferase domain-containing protein [Pelobacter
          propionicus DSM 2379]
 gi|118501811|gb|ABK98293.1| PHP C-terminal domain protein [Pelobacter propionicus DSM 2379]
          Length = 294

 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 1  LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          +   +  +P ++ L VHS+ S  +GALS   ++++    +   IAI D +++ +  + + 
Sbjct: 1  MRSMIASTPGYIDLHVHSNCS--DGALSPAALVEEAKRLELSTIAIADHDSIVAVDQAAH 58

Query: 61 KACAAGIQPIIGCQLDIDMQ 80
           A   GI+ +   +L +   
Sbjct: 59 CAVLRGIELMPAVELSVQYG 78


>gi|194334498|ref|YP_002016358.1| PHP domain-containing protein [Prosthecochloris aestuarii DSM
          271]
 gi|194312316|gb|ACF46711.1| PHP domain protein [Prosthecochloris aestuarii DSM 271]
          Length = 286

 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G  +   I+ K       AI+ITD +++    +    A   GI+ I G 
Sbjct: 18 LHIHTKCS--DGVFTPEEIVLKAKKAGLKAISITDHDSVSGIDKAKPLAIQHGIELINGV 75

Query: 74 QLDIDMQDN 82
          ++    QD+
Sbjct: 76 EMSSTYQDH 84


>gi|168044390|ref|XP_001774664.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673964|gb|EDQ60479.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 294

 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS  +++ +   +    +A+TD + +       + A   G++ I G 
Sbjct: 3   LHTHSTCS--DGRLSPTDLVLRAHRNGVNVLALTDHDTMEGVPVALKVARDLGMRLIPGV 60

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++          T+Q +        I+  
Sbjct: 61  EIS----AKFASTSQLQRGEEENVHILAY 85


>gi|227499054|ref|ZP_03929191.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904503|gb|EEH90421.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 282

 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 14/102 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN-LFSALEFSQKACAA------G 66
           L +H+++S  +G  +   ++ +       A+AITD +N L        +A         G
Sbjct: 5   LHMHTTFS--DGVNTPEELVREAEKAHLCAMAITDHDNTLA-----YDEAKKVIDARQDG 57

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           I  I G ++D D +                     L     G
Sbjct: 58  IHLIRGVEMDTDYKGKDVHVLGFHFDPAVPIFQQALAWNRSG 99


>gi|118443644|ref|YP_877742.1| metal-dependent phosphoesterase [Clostridium novyi NT]
 gi|118134100|gb|ABK61144.1| Predicted metal-dependent phosphoesterase (PHP family)
          [Clostridium novyi NT]
          Length = 277

 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          + K   F HL      +  +G LS   +++    +    IAITD +N F   E       
Sbjct: 1  MYKKGDF-HLHT----TASDGKLSPYELVNLAKEEGFDIIAITDHDNTFGINEAITCGTE 55

Query: 65 AGIQPIIGCQLD 76
           G++ I G +L 
Sbjct: 56 VGVKVIPGIELS 67


>gi|322419435|ref|YP_004198658.1| PHP domain-containing protein [Geobacter sp. M18]
 gi|320125822|gb|ADW13382.1| PHP domain protein [Geobacter sp. M18]
          Length = 284

 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 2/89 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS+YS  +G  +   ++         AIA+ D + +    E      A G++ +   
Sbjct: 7   LHMHSTYS--DGVRTPTELVAMAKGLGLKAIALADHDTVDGIDEALAAGAAQGVEVLPAL 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           +  +       +   G       P + L+
Sbjct: 65  EFSVAYGSFRDVHLLGYLLDHRDPQLQLI 93


>gi|145593293|ref|YP_001157590.1| phosphotransferase domain-containing protein [Salinispora tropica
           CNB-440]
 gi|145302630|gb|ABP53212.1| PHP C-terminal domain protein [Salinispora tropica CNB-440]
          Length = 284

 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 65/211 (30%), Gaps = 36/211 (17%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS---ALEFSQKACAAGIQPI 70
           L  HS+ S  +G L+   ++   AA     +AITD +       A+     A  AG++ +
Sbjct: 7   LHTHSTAS--DGTLTPGELVHAAAAAGLDVVAITDHDTTAGWEPAVR----ALPAGLRLV 60

Query: 71  IGCQLDIDMQDNLKMTNQGKTPF---PTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
            G +L           +     +   P  P +        G  R         L    + 
Sbjct: 61  RGAELSCRWDGADPAVSLHLLAYLFDPDNPDLTA----ELGRVR------HARLERGERI 110

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSG-----PIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
              +    L+   +E   +L G   G      I +A   +        + T  + FG   
Sbjct: 111 VRLLQADGLEVSWSE---ILAGAQGGTVGRPHIAQALIRSG------LVATTSEAFGPDW 161

Query: 183 YVNLQRHRGYDRYRESQVVQLAYTHELPLVA 213
                R    D      V  +     +P+ A
Sbjct: 162 LGERYRLPKEDIEVFEAVRLVRAAGGVPVFA 192


>gi|301156292|emb|CBW15763.1| conserved protein [Haemophilus parainfluenzae T3T1]
          Length = 275

 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L    ++ +        +A+ D + +    E   +A   GI+ I G 
Sbjct: 7   LHCHSTAS--DGVLMPTELVQRAHEQGVNVLALCDHDTVMGIDEAKLEADKLGIELINGV 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV-LLVS 104
           ++     +   +   G     T P +  LL  
Sbjct: 65  EIS-TNWEGRGIHIVGLNFDKTHPKMTALLAE 95


>gi|289755501|ref|ZP_06514879.1| predicted protein [Mycobacterium tuberculosis EAS054]
 gi|289696088|gb|EFD63517.1| predicted protein [Mycobacterium tuberculosis EAS054]
          Length = 94

 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 989  TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
               G+ + +A  V  +Q+  T +G  + ++   +          P
Sbjct: 1    MSDGDRVLIAGAVTHRQRPATAQG--VTFINLEDETGMVNVLCTP 43


>gi|253575765|ref|ZP_04853100.1| PHP domain-containing protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844808|gb|EES72821.1| PHP domain-containing protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 294

 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 28/104 (26%), Gaps = 4/104 (3%)

Query: 1   LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           +  ++     +  L  H+  S  +G       +          +AITD + +    E   
Sbjct: 1   MEPHMANE-RY-DLHSHTQAS--DGMNKPAENVRLAKEKGLTGLAITDHDTVAGIEEALL 56

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS 104
                G+  + G ++                 F     +  L  
Sbjct: 57  AGKELGVDVVPGIEISTRAGGKDIHVLGYFLNFEDEHLLERLAR 100


>gi|121996959|ref|YP_001001746.1| phosphotransferase domain-containing protein [Halorhodospira
          halophila SL1]
 gi|121588364|gb|ABM60944.1| PHP C-terminal domain protein [Halorhodospira halophila SL1]
          Length = 282

 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  S  +G L+   ++ + A      +A+TD + +    E    A   G++ + G 
Sbjct: 7  LHCHS--SASDGHLAPAAVVHRAAERGVETLALTDHDTVAGIEEARAAAAPLGLRLVAGL 64

Query: 74 QLDIDMQDN 82
          +L +  Q  
Sbjct: 65 ELSVLWQGR 73


>gi|170782267|ref|YP_001710600.1| hypothetical protein CMS_1901 [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156836|emb|CAQ02003.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 291

 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 77/261 (29%), Gaps = 73/261 (27%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S+ +G  +   +  + AA    A+A+TD ++     + S  A A GI  + G 
Sbjct: 11  LHTHS--SVSDGTETPVELAAQAAAQGLSAVALTDHDSTAGWADASDAALAHGITLVPGM 68

Query: 74  QL-------------DIDMQDNLKMTNQGKTPFPTV--------------PSIV---LLV 103
           ++              +   ++  +                           +    +L 
Sbjct: 69  EMSTQLEYASVHVLAYLFDPEDADLAAMTARVRSERMTRAEAMVGRISRDYDLTWADVLA 128

Query: 104 STAEGYQRLI---------ELVSRMYLLD------------QGKQSVRICLSWLQEI--- 139
            T  G               LV+R ++               G          +  +   
Sbjct: 129 QTTPG----STIGRPHIADALVARGHVPTRTAAFECILHWQGGYYRPHYAPDPILGVELI 184

Query: 140 -GTEGLIMLT-GGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRE 197
               GL +L   G+ GP       +S   A         LFG    + + RHR       
Sbjct: 185 TAAGGLAVLAHPGARGP--ERVLSDSRMTALVAAG----LFG----LEV-RHRDNPPASR 233

Query: 198 SQVVQLAYTHELPLVATNNSL 218
            ++ +LA    L +  +++  
Sbjct: 234 VRLTELAERFGLEVTGSSDYH 254


>gi|289675280|ref|ZP_06496170.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv. syringae
           FF5]
          Length = 50

 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 10/60 (16%)

Query: 51  NLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
           N+ S ++F + A  +GI+PI G  L +           G+     +  I LL   A GY+
Sbjct: 1   NMCSLVKFYKAAQGSGIKPICGVDLWLA----------GRDEDAALSRISLLAMNAPGYR 50


>gi|148264848|ref|YP_001231554.1| phosphotransferase domain-containing protein [Geobacter
          uraniireducens Rf4]
 gi|146398348|gb|ABQ26981.1| PHP C-terminal domain protein [Geobacter uraniireducens Rf4]
          Length = 288

 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          FV L +HSSYS  +G      ++   A     AIA+ D + +    E  +     G++ I
Sbjct: 4  FVDLHMHSSYS--DGIHKPEILVAMAAEKNLKAIALADHDAVEGIDEALEAGERLGVEVI 61

Query: 71 IGCQLDIDMQDNLKM 85
             +L ++ + +  +
Sbjct: 62 PAVELSVEFKKHHDV 76


>gi|253583313|ref|ZP_04860511.1| phosphotransferase domain-containing protein [Fusobacterium
          varium ATCC 27725]
 gi|251833885|gb|EES62448.1| phosphotransferase domain-containing protein [Fusobacterium
          varium ATCC 27725]
          Length = 276

 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
           +H+  S  +G  +   I+ +  +    +IAITD + +    E  + A   GI+ I G +
Sbjct: 6  HIHTIAS--DGTFTPEEIVKRAKSLGMKSIAITDHDTIDGLEEGKRTAAEIGIEFIQGIE 63

Query: 75 LDIDMQD 81
          +  ++ +
Sbjct: 64 ISCNVDN 70


>gi|304388349|ref|ZP_07370462.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           meningitidis ATCC 13091]
 gi|304337666|gb|EFM03822.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           meningitidis ATCC 13091]
          Length = 278

 Score = 62.5 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHS--TVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADKLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQGRLKRL 101


>gi|20807816|ref|NP_622987.1| metal-dependent phosphoesterase [Thermoanaerobacter tengcongensis
          MB4]
 gi|254479233|ref|ZP_05092578.1| putative PHP domain protein [Carboxydibrachium pacificum DSM
          12653]
 gi|20516375|gb|AAM24591.1| predicted metal-dependent phosphoesterases (PHP family)
          [Thermoanaerobacter tengcongensis MB4]
 gi|214034834|gb|EEB75563.1| putative PHP domain protein [Carboxydibrachium pacificum DSM
          12653]
          Length = 308

 Score = 62.5 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F  L +HS  S  +G  S   ++    A     IA+TD + +    E  + +   GI+ I
Sbjct: 27 FADLHMHSKAS--DGTNSPREVVRLAKAHGLSCIALTDHDTVDGLQEAIEASFELGIEVI 84

Query: 71 IGCQLDIDMQD 81
           G + +   +D
Sbjct: 85 PGIEFNCYYKD 95


>gi|262281057|ref|ZP_06058839.1| metal-dependent phosphoesterase [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257288|gb|EEY76024.1| metal-dependent phosphoesterase [Acinetobacter calcoaceticus
           RUH2202]
          Length = 283

 Score = 62.5 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 9/89 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+  + +G LS   ++          +A+TD + +         A    ++ I G 
Sbjct: 6   LHTHSN--ISDGTLSPELLVQAAIDVNLHTLALTDHDTMDGLQRAKIAAQGHDLKIISGT 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++           ++  T       IV L
Sbjct: 64  EIS-------SQWSRPTTKKSYGVHIVAL 85


>gi|198283229|ref|YP_002219550.1| PHP domain-containing protein [Acidithiobacillus ferrooxidans
          ATCC 53993]
 gi|218667411|ref|YP_002425461.1| hypothetical protein AFE_0987 [Acidithiobacillus ferrooxidans
          ATCC 23270]
 gi|198247750|gb|ACH83343.1| PHP domain protein [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519624|gb|ACK80210.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans
          ATCC 23270]
          Length = 286

 Score = 62.5 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 1  LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          + Q    SP  V L +HS  S  +G ++  +++ ++       +A+TD +N     E + 
Sbjct: 1  MAQQYPVSP--VDLHMHSMAS--DGTMTPADLVQRVHGAGVRVMALTDHDNTAGLDEAAV 56

Query: 61 KACAAGIQPIIGCQLD 76
          +A    I+ I G ++ 
Sbjct: 57 QAETLDIRLIPGVEIS 72


>gi|330465619|ref|YP_004403362.1| phosphotransferase domain-containing protein [Verrucosispora maris
           AB-18-032]
 gi|328808590|gb|AEB42762.1| phosphotransferase domain-containing protein [Verrucosispora maris
           AB-18-032]
          Length = 286

 Score = 62.5 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 67/210 (31%), Gaps = 34/210 (16%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA---GIQPI 70
           L  HS+ S  +G LS   ++   A      +AITD +         + A  A   G++ +
Sbjct: 7   LHTHSTAS--DGTLSPPQLVRAAAEAGLDVVAITDHDTTAG----WEPALQALPGGLRLV 60

Query: 71  IGCQLDIDMQDNLKMTNQGKTPF---PTVPSIVL-LVSTAEGYQRLI---ELVSRMYLLD 123
            G +L                 +   P  P +V  L        RL     +V+ ++   
Sbjct: 61  RGAELSCRWNGVEPSLPLHLLAYLFDPDAPELVAELARVRA--ARLQRGERIVALLWADG 118

Query: 124 QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLY 183
                  I +SW +        +L G   G + R     +   A   + T  + FG    
Sbjct: 119 -------IDVSWPE--------ILAGAGGGTVGRPHIAQALIRAGLVVTT-TEAFGPDWL 162

Query: 184 VNLQRHRGYDRYRESQVVQLAYTHELPLVA 213
               R    D      V  +     +P+ A
Sbjct: 163 GERYRLPKEDIDVFQAVRLIRAAGGVPVFA 192


>gi|332180209|gb|AEE15897.1| PHP domain protein [Treponema brennaborense DSM 12168]
          Length = 284

 Score = 62.5 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 75/224 (33%), Gaps = 48/224 (21%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G+L  + ++   AA     +A+TD +      E +  A  A +  + G 
Sbjct: 4   LHTHSTAS--DGSLPPSELISYAAAKGIRVLALTDHDTDSGLTEAADAASRADVTFVPGI 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR----LIELVSRMYLLDQGKQS- 128
           +L++                     ++ L     G Q     L  ++   +L +  K   
Sbjct: 62  ELNVSWPTGE-------------FHLLGL-----GLQHTDPALARII--AFLQEGRKNRN 101

Query: 129 -----------VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
                        + L+ LQ      +I     +   + +    N  Q  +  L      
Sbjct: 102 SQIIEKMKNDGFDVSLTELQSAYPGAIIGRPHIAEYFVRQKICKNRQQAFDTYLGK---- 157

Query: 178 FGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLS 221
            G   YV   R        +  +  +  +  +P++A   SL++S
Sbjct: 158 -GRPYYVE--RTGAD---LDDAIGAVCKSGGIPVLAHPLSLYVS 195


>gi|239618499|ref|YP_002941821.1| PHP domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239507330|gb|ACR80817.1| PHP domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 279

 Score = 62.5 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 67/209 (32%), Gaps = 37/209 (17%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE----FSQKACAAGIQP 69
           L VHS+ S  +G  +   +L++ A      +AITD + +    E    F        +  
Sbjct: 5   LHVHSTAS--DGTCTPEELLEEAADKGIEVLAITDHDTINGVKELPNVF------KDVIV 56

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL--LVSTAEGYQRLIELVSRMYLLDQGKQ 127
           I G ++  +    L +   G  P        L  L       + LI       +      
Sbjct: 57  IKGVEISAEFNGVLHILGYGVDPNNERIDQTLTEL-QDYRLKRNLI------MIEKMKSH 109

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              I L  L+E+G + LI    G                 ++    + K  G   YV   
Sbjct: 110 GFDITLEELKEVGNDDLI----GRPHFASLMIKKGYVDSYDEAFEKYLKK-GALFYV--- 161

Query: 188 RHRGYDRYRE---SQVVQLAYTHELPLVA 213
                D+ R      +  +     +P++A
Sbjct: 162 -----DKKRLSPKESIEMILEADGIPVIA 185


>gi|317051784|ref|YP_004112900.1| PHP domain-containing protein [Desulfurispirillum indicum S5]
 gi|316946868|gb|ADU66344.1| PHP domain protein [Desulfurispirillum indicum S5]
          Length = 287

 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G+ S   +  + A     A+A+TD + +     F Q     G++ I G 
Sbjct: 5  LHAHSTAS--DGSDSPAMLASRAAEAHLSALALTDHDTVAGVEPFMQACALCGVEGIAGV 62

Query: 74 QLD 76
          ++ 
Sbjct: 63 EIS 65


>gi|292656099|ref|YP_003535996.1| PHP domain-containing protein [Haloferax volcanii DS2]
 gi|291372947|gb|ADE05174.1| PHP domain protein [Haloferax volcanii DS2]
          Length = 234

 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 11/73 (15%)

Query: 14 LQVHSSYSLLEGAL-----SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L VH+       A      S+  +L + AA    A+AITD +++ +       A   G++
Sbjct: 18 LHVHTD------ASYDCEMSVEAVLARAAAVGLDAVAITDHDSVGALPRAFDIAHEYGVR 71

Query: 69 PIIGCQLDIDMQD 81
           + G ++      
Sbjct: 72 VVPGVEVSTADGH 84


>gi|124486486|ref|YP_001031102.1| hypothetical protein Mlab_1674 [Methanocorpusculum labreanum Z]
 gi|124364027|gb|ABN07835.1| PHP C-terminal domain protein [Methanocorpusculum labreanum Z]
          Length = 232

 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 71/206 (34%), Gaps = 50/206 (24%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII-G 72
           L +H+S S  +G   + +++ K       AI+ITD +    A +        GI  II G
Sbjct: 8   LHIHTSASA-DGKCPVKDVIAKAKERGLDAISITDHDTTEGAKQAL-ALKNPGI-LIIPG 64

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            ++                       +++L +T               + +QGK      
Sbjct: 65  IEVS-----------------TKQGHLLVLGTTK--------------MFEQGKDV---- 89

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
           L  ++E   EG + +          A   +S    ++      ++F  R Y+        
Sbjct: 90  LETIREAKAEGCLTIVPHPYHRWRHAVGLHSPDALQEADA--IEVFNSRYYIG------- 140

Query: 193 DRYRESQVVQLAYTHELPLVATNNSL 218
                S+  ++A  +  P+ A +++ 
Sbjct: 141 --TANSRAAKVAKKYHKPMTAGSDAH 164


>gi|325129565|gb|EGC52389.1| PHP domain protein [Neisseria meningitidis OX99.30304]
 gi|325135609|gb|EGC58226.1| PHP domain protein [Neisseria meningitidis M0579]
          Length = 278

 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   I+     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHS--TVSDGMLSPAEIVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQGRLKRL 101


>gi|299768775|ref|YP_003730801.1| PHP domain protein [Acinetobacter sp. DR1]
 gi|298698863|gb|ADI89428.1| PHP domain protein [Acinetobacter sp. DR1]
          Length = 283

 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 9/89 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+  + +G LS   ++          +A+TD + +         A    ++ I G 
Sbjct: 6   LHTHSN--ISDGTLSPELLVQAAIDVNLHTLALTDHDTMDGLQRARIAAQGHDLKIISGT 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++           ++  T       IV L
Sbjct: 64  EIS-------SQWSRPTTKKSYGVHIVAL 85


>gi|295100077|emb|CBK89166.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Eubacterium cylindroides T2-87]
          Length = 295

 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
          S++ L +H+ YS  +G      ++D         +AI D N + +  E  ++A   G++ 
Sbjct: 3  SYIDLHMHTKYSD-DGQFEPAKLVDMCKEAGVKIMAIADHNTVNAIPEAIKQAQKNGMKY 61

Query: 70 IIGCQLDIDMQD 81
          I   ++D   +D
Sbjct: 62 IPAIEIDCTYKD 73


>gi|332178528|gb|AEE14217.1| PHP domain protein [Thermodesulfobium narugense DSM 14796]
          Length = 244

 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAAD-QQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          L +HSS+S  +G  S   I+  +A       IAITD +N+  +L+  +     GI  + G
Sbjct: 10 LHIHSSFS--DGIASPEEIVKYVANYTDLKIIAITDHDNIKGSLKAVELGEKYGIIVVPG 67

Query: 73 CQLD 76
           ++ 
Sbjct: 68 VEVT 71


>gi|119505058|ref|ZP_01627134.1| PHP-like protein [marine gamma proteobacterium HTCC2080]
 gi|119459040|gb|EAW40139.1| PHP-like protein [marine gamma proteobacterium HTCC2080]
          Length = 280

 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            H++ S  +GALS + +L + A     A+A+TD + L    + +Q   A GI  + G +
Sbjct: 12 HTHTTAS--DGALSPSQLLLRAAERGVQALALTDHDTLSG-WQAAQALEADGIAIVCGAE 68

Query: 75 LD 76
          L 
Sbjct: 69 LS 70


>gi|15615934|ref|NP_244238.1| hypothetical protein BH3372 [Bacillus halodurans C-125]
 gi|10175995|dbj|BAB07091.1| BH3372 [Bacillus halodurans C-125]
          Length = 266

 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 55/180 (30%), Gaps = 36/180 (20%)

Query: 14  LQVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           L +H+      YS          I+ K        IAITD + L    E        GI 
Sbjct: 14  LHIHTTASDGEYS-------PTAIVKKAKEIGLRTIAITDHDTLDGIEEAVIAGKRHGIN 66

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL--LVSTAEGYQRLIELVSRMYLLDQGK 126
            I   +L    +                   +L  L    EG    ++++      ++  
Sbjct: 67  VIPAIELTTKYKGTNVDILGYNVKASEKLQAILVQLKKHREGRA--MQII------EKFN 118

Query: 127 Q-SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                I L  +++   +G+I         I +A            +L ++ +F +  Y+ 
Sbjct: 119 DIGFTITLDEVKQFSEDGVIA-----RPHIAKAIVKKGY------VLDYQTVFDE--YLA 165


>gi|308187011|ref|YP_003931142.1| Protein TrpH [Pantoea vagans C9-1]
 gi|308057521|gb|ADO09693.1| Protein TrpH [Pantoea vagans C9-1]
          Length = 305

 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H+  S  +G L+  +++ +    +   +AITD +++    E  Q A      I+ + 
Sbjct: 23  LHSHTRAS--DGLLTPADLVQRAVEMRVGVLAITDHDSVAGVEEAQQTARDHDLPIKVLA 80

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           G ++    +++                +  L 
Sbjct: 81  GAEISTLWENHEIHIVGLNIDIHHPAMMTFLA 112


>gi|167835341|ref|ZP_02462224.1| error-prone DNA polymerase [Burkholderia thailandensis MSMB43]
          Length = 92

 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 995  IRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
             R   +V ++Q   T KG  + +VT  +          P
Sbjct: 2    ARACGLVTARQMPGTAKG--VLFVTLEDETGSVNVIVRP 38


>gi|15677660|ref|NP_274821.1| hypothetical protein NMB1824 [Neisseria meningitidis MC58]
 gi|7227077|gb|AAF42159.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|316984427|gb|EFV63400.1| PHP domain protein [Neisseria meningitidis H44/76]
 gi|325139644|gb|EGC62183.1| PHP domain protein [Neisseria meningitidis CU385]
 gi|325200885|gb|ADY96340.1| PHP domain protein [Neisseria meningitidis H44/76]
          Length = 278

 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHS--TVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADKLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRKGRLKRL 101


>gi|328954239|ref|YP_004371573.1| PHP domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328454563|gb|AEB10392.1| PHP domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 289

 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 7  KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
          KS  +V L VHS+ S  +G+ S   ++ K  +    AIA+TD + +    E        G
Sbjct: 4  KSTVYVDLHVHSTAS--DGSFSPREVVIKAKSRGLQAIALTDHDTVDGLEEALAAGKEVG 61

Query: 67 IQPIIGCQLD 76
          ++ I G ++ 
Sbjct: 62 LEVIPGIEIS 71


>gi|251792527|ref|YP_003007253.1| fumarate hydratase [Aggregatibacter aphrophilus NJ8700]
 gi|247533920|gb|ACS97166.1| fumarate hydratase [Aggregatibacter aphrophilus NJ8700]
          Length = 275

 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++ +        +A+TD + +    E  ++A   GIQ I G 
Sbjct: 6  LHCHSTAS--DGVLSPTEVVLRAYEKGVNVLALTDHDTVAGVSEARKQADLLGIQLINGV 63

Query: 74 QLDIDMQDN 82
          +L    ++ 
Sbjct: 64 ELSTLWENR 72


>gi|239501670|ref|ZP_04660980.1| metal-dependent phosphoesterase [Acinetobacter baumannii AB900]
          Length = 283

 Score = 61.7 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 9/89 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+  + +G LS   ++      +   +A+TD + +       + A    +Q I G 
Sbjct: 6   LHTHSN--ISDGTLSPELLVQAAVDVKLHTLALTDHDTMDGLQRARKAAQPHDLQIISGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++           ++  T       IV L
Sbjct: 64  EIS-------SQWSRPSTKKSYGVHIVAL 85


>gi|307822361|ref|ZP_07652593.1| PHP domain protein [Methylobacter tundripaludum SV96]
 gi|307736927|gb|EFO07772.1| PHP domain protein [Methylobacter tundripaludum SV96]
          Length = 277

 Score = 61.7 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 12/168 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +GALS   ++ +       ++A+TD + +    E    A AAGI+ I G 
Sbjct: 7   LHCHSTAS--DGALSPTAVVQRAHGCGVTSLALTDHDTVSGLNEAQAAADAAGIKLIPGI 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVS-RMYLLDQGKQSVRIC 132
           +L    Q+       G    P  P +      AE  + L  + + R   +    +  RI 
Sbjct: 65  ELSTSWQNKCFHIV-GLGIDPAYPPL------AEATRNLQTMRTERAEKIADKLEKKRIP 117

Query: 133 --LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
             L  +++   EG+I  T  +   + +       +  ++ L   K  F
Sbjct: 118 GALEAVKKAAGEGMITRTHFADFLLSQFHVSTQQEAFDRYLGAGKAAF 165


>gi|304316834|ref|YP_003851979.1| PHP domain protein [Thermoanaerobacterium thermosaccharolyticum
          DSM 571]
 gi|302778336|gb|ADL68895.1| PHP domain protein [Thermoanaerobacterium thermosaccharolyticum
          DSM 571]
          Length = 272

 Score = 61.7 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 3/86 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H++ S  +G      ++     +    IAITD + L    E  + +   GI+ I G 
Sbjct: 5  LHIHTTKS--DGTCKPKEVVQMAKNENLSTIAITDHDTLDGIDEAKEASKLYGIEIIPGI 62

Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSI 99
          +L+    D   +   G         +
Sbjct: 63 ELN-SYDDRQDVHILGYFIDYKNNDL 87


>gi|212703383|ref|ZP_03311511.1| hypothetical protein DESPIG_01426 [Desulfovibrio piger ATCC
          29098]
 gi|212673229|gb|EEB33712.1| hypothetical protein DESPIG_01426 [Desulfovibrio piger ATCC
          29098]
          Length = 286

 Score = 61.7 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F+ L  HS  S  +G  S   ++         A+A+TD + +    E    A   G+  +
Sbjct: 3  FIDLHTHSQAS--DGTDSPGQLVRNARMQGLAAVAVTDHDTVSGLDEAEAAARDLGLDFV 60

Query: 71 IGCQLD 76
           GC+L 
Sbjct: 61 RGCELS 66


>gi|297571786|ref|YP_003697560.1| PHP domain protein [Arcanobacterium haemolyticum DSM 20595]
 gi|296932133|gb|ADH92941.1| PHP domain protein [Arcanobacterium haemolyticum DSM 20595]
          Length = 278

 Score = 61.7 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H++ S  +G  S   ++ K        I +TD + +    E S  A A  I+ + G 
Sbjct: 5  LHTHTTCS--DGTDSPTELMKKACEVGIDVIGLTDHDTVSGWEEASIAARANNIRLVRGM 62

Query: 74 QLD 76
          ++ 
Sbjct: 63 EIT 65


>gi|294635972|ref|ZP_06714414.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
           [Edwardsiella tarda ATCC 23685]
 gi|291090701|gb|EFE23262.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
           [Edwardsiella tarda ATCC 23685]
          Length = 314

 Score = 61.7 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--SQKACAAGIQPII 71
           L  H+  S  +G LS   ++ +        +AITD + +        +  A    +  + 
Sbjct: 27  LHSHTQAS--DGLLSPEALVARAVMRGVSTLAITDHDTVAGIAPARQAIAAQKLPLTLVA 84

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIV-LLV 103
           G ++   + ++ ++   G       P +V  L 
Sbjct: 85  GVEIS-TLWEHHEIHVVGLQVDTRNPQLVEFLA 116


>gi|223939372|ref|ZP_03631251.1| PHP domain protein [bacterium Ellin514]
 gi|223891976|gb|EEF58458.1| PHP domain protein [bacterium Ellin514]
          Length = 282

 Score = 61.7 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F  L +H+++S  +G  +   +       +  A+A+TD + L             GI+ +
Sbjct: 2  FADLHLHTNFS--DGTFTPEELAMHGKRHELAAMALTDHDTLEGCERMGAACETNGIEFV 59

Query: 71 IGCQLD 76
           G +L 
Sbjct: 60 TGTELT 65


>gi|262371121|ref|ZP_06064443.1| metal-dependent phosphoesterase [Acinetobacter johnsonii SH046]
 gi|262314007|gb|EEY95052.1| metal-dependent phosphoesterase [Acinetobacter johnsonii SH046]
          Length = 283

 Score = 61.7 bits (148), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+  + +G  +   ++D  A      +A+TD + +         A +  ++ I G 
Sbjct: 6  LHTHSN--ISDGTFTPKQLVDAAAEKGIHTLALTDHDTMDGLALAELAAKSHTMRIISGV 63

Query: 74 QLD 76
          ++ 
Sbjct: 64 EIS 66


>gi|262183813|ref|ZP_06043234.1| DNA polymerase III, alpha subunit [Corynebacterium aurimucosum
          ATCC 700975]
          Length = 55

 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 13/34 (38%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAI 44
          F  L   SSYS L GA     ++ +        I
Sbjct: 22 FAELHAVSSYSFLRGASEPEELVARAVDLGLWGI 55


>gi|322514437|ref|ZP_08067479.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
           [Actinobacillus ureae ATCC 25976]
 gi|322119644|gb|EFX91706.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
           [Actinobacillus ureae ATCC 25976]
          Length = 252

 Score = 61.3 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS   ++ +    Q   +A+TD + +    E  Q A    I  I G 
Sbjct: 5   LHSHSTAS--DGMLSPAELVQRALEQQIEMLALTDHDTVEGIQEAKQAAQGQPISLIAGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           ++ I  +              T P++V
Sbjct: 63  EISIVWEGKSIHLA-ALNVDDTHPALV 88


>gi|120598423|ref|YP_962997.1| phosphotransferase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|146293498|ref|YP_001183922.1| phosphotransferase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|120558516|gb|ABM24443.1| PHP C-terminal domain protein [Shewanella sp. W3-18-1]
 gi|145565188|gb|ABP76123.1| PHP C-terminal domain protein [Shewanella putrefaciens CN-32]
 gi|319426803|gb|ADV54877.1| PHP family metal-dependent phosphoesterase, TrpH [Shewanella
           putrefaciens 200]
          Length = 286

 Score = 61.3 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 9/103 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL--EFSQKACAAGIQPII 71
           L  H++ S  +G L+ + ++ +         AITD + +          +A AA ++ I 
Sbjct: 10  LHSHTTAS--DGQLTPSELVARALEKGVQLFAITDHDTVAGLPEARAFNQAQAAPLKLIS 67

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV--STAEGYQRL 112
           G ++                       + LL         + L
Sbjct: 68  GVEISTRWNSYDIHIVALNFDADN---LALLAFLENQRELREL 107


>gi|329118190|ref|ZP_08246900.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465611|gb|EGF11886.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 278

 Score = 61.3 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   ++    A+    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHS--TISDGRLSPAEVVRLAHANGCTLLALTDHDHTGGLPEARAEAAKLGLRLINGA 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  + +                  LL    +G  +RL
Sbjct: 62  EISVTWRGSTIHIVGLDFDEHNETLQNLLARVKKGRLKRL 101


>gi|54297352|ref|YP_123721.1| hypothetical protein lpp1397 [Legionella pneumophila str. Paris]
 gi|53751137|emb|CAH12548.1| hypothetical protein lpp1397 [Legionella pneumophila str. Paris]
          Length = 279

 Score = 61.3 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HSS+S  +GAL+   ++ + +  Q   +++TD + +         A    I+ + G 
Sbjct: 4  LHCHSSFS--DGALTPEELIKRASTLQVQCLSLTDHDTVAGYDALYGAAIHTNIEIVKGI 61

Query: 74 QLD 76
          +L 
Sbjct: 62 ELS 64


>gi|298531114|ref|ZP_07018515.1| PHP domain protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509137|gb|EFI33042.1| PHP domain protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 285

 Score = 61.3 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G ++   ++         A+A+TD +     ++  Q     G++ + GC
Sbjct: 6  LHTHSTAS--DGTMTPYELVSHARNIGLKALALTDHDTTKGLMQALQAGNDLGLEVVPGC 63

Query: 74 QLDIDMQD 81
          +L ++   
Sbjct: 64 ELSVEYPG 71


>gi|298674507|ref|YP_003726257.1| PHP domain-containing protein [Methanohalobium evestigatum
          Z-7303]
 gi|298287495|gb|ADI73461.1| PHP domain protein [Methanohalobium evestigatum Z-7303]
          Length = 223

 Score = 61.3 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPIIG 72
           VHS +S  +    L +I+     +   A+AI D + +   +E  + A   G  I  I G
Sbjct: 8  HVHSCFS-KDSNSKLESIISFAEKNGLDAVAICDHDTVEGGIEGLKVAKKLGSKITVIPG 66

Query: 73 CQLD 76
           ++ 
Sbjct: 67 IEVT 70


>gi|300087150|ref|YP_003757672.1| PHP domain-containing protein [Dehalogenimonas
          lykanthroporepellens BL-DC-9]
 gi|299526883|gb|ADJ25351.1| PHP domain protein [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 279

 Score = 61.3 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-AGIQPIIG 72
          L VHS+ S  +G LS   ++ K  A     +A+TD + +F   E  ++      +  I G
Sbjct: 7  LHVHSNAS--DGVLSPAEVVRKAVAQGVTYLALTDHDTVFGIEEAVREVRRFQNLTFIPG 64

Query: 73 CQLDIDMQ 80
           ++  D++
Sbjct: 65 VEISTDVE 72


>gi|160931700|ref|ZP_02079094.1| hypothetical protein CLOLEP_00532 [Clostridium leptum DSM 753]
 gi|156869345|gb|EDO62717.1| hypothetical protein CLOLEP_00532 [Clostridium leptum DSM 753]
          Length = 276

 Score = 61.3 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 25/66 (37%)

Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQD 81
          + +G+ S++ ++          IA+TD +    A          GI+ I G ++      
Sbjct: 1  MSDGSASIDEVVLMAKKLGLKTIAVTDHDTFAGATRACVYGRRQGIEVIHGAEISCIDSA 60

Query: 82 NLKMTN 87
            +  +
Sbjct: 61 RGRKVH 66


>gi|237799075|ref|ZP_04587536.1| phosphotransferase domain-containing protein [Pseudomonas
          syringae pv. oryzae str. 1_6]
 gi|331021929|gb|EGI01986.1| phosphotransferase domain-containing protein [Pseudomonas
          syringae pv. oryzae str. 1_6]
          Length = 187

 Score = 61.3 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +GALS   ++ +   +    +++TD + L    E    A + G+Q + G 
Sbjct: 5  LHCHSTAS--DGALSPKALVARAHENGVRVLSLTDHDTLEGLEEARAAALSLGMQLVNGV 62

Query: 74 QLD 76
          +L 
Sbjct: 63 ELS 65


>gi|134299764|ref|YP_001113260.1| phosphotransferase domain-containing protein [Desulfotomaculum
          reducens MI-1]
 gi|134052464|gb|ABO50435.1| PHP C-terminal domain protein [Desulfotomaculum reducens MI-1]
          Length = 275

 Score = 61.3 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          +  L +H++ S  +G+ + + ++ K       AIAI+D + +   LE  + A    ++ I
Sbjct: 3  YADLHIHTTAS--DGSDTPSEVVHKALEIGLRAIAISDHDTMDGVLEAERAAEKFNLEVI 60

Query: 71 IGCQLD 76
           G +++
Sbjct: 61 SGVEVN 66


>gi|94499322|ref|ZP_01305860.1| TrpH [Oceanobacter sp. RED65]
 gi|94428954|gb|EAT13926.1| TrpH [Oceanobacter sp. RED65]
          Length = 276

 Score = 61.3 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 14 LQVHSSYSLL-EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          L  H   SL  +G LS  +++++        +A+TD + +    E  Q A   G++ I G
Sbjct: 5  LHCH---SLRSDGQLSPTDLVNRAYEQGVTHLALTDHDTINGLQEAKQAAKPLGLEIIHG 61

Query: 73 CQLD 76
           ++ 
Sbjct: 62 IEIS 65


>gi|50086134|ref|YP_047644.1| phosphoesterase [Acinetobacter sp. ADP1]
 gi|49532110|emb|CAG69822.1| putative phosphoesterase (PHP family) [Acinetobacter sp. ADP1]
          Length = 283

 Score = 61.3 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 9/89 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+  + +G LS + ++D   A     +A+TD + +       Q+A    IQ I G 
Sbjct: 6   LHTHSN--ISDGTLSPSCLVDAAIACGIHTLALTDHDTMDGLETAIQQAQGHDIQIISGA 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++           ++  T       IV L
Sbjct: 64  EIS-------SQWSRPNTKKAYGVHIVAL 85


>gi|260557104|ref|ZP_05829320.1| metal-dependent phosphoesterase [Acinetobacter baumannii ATCC
           19606]
 gi|260409210|gb|EEX02512.1| metal-dependent phosphoesterase [Acinetobacter baumannii ATCC
           19606]
          Length = 283

 Score = 61.3 bits (147), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 9/89 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+  + +G LS   ++      +   +A+TD + +         A    +Q I G 
Sbjct: 6   LHTHSN--ISDGTLSPELLVQAAVDVKLHTLALTDHDTMDGLQRARNAAQPHDLQIITGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++           ++  T       IV L
Sbjct: 64  EIS-------SQWSRPSTKKSYGVHIVAL 85


>gi|296242743|ref|YP_003650230.1| PHP domain-containing protein [Thermosphaera aggregans DSM 11486]
 gi|296095327|gb|ADG91278.1| PHP domain protein [Thermosphaera aggregans DSM 11486]
          Length = 229

 Score = 61.0 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 7/97 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-AGIQPIIG 72
           L +HS YS  +G  S   I+    A+    I+ITD N    ++   + A +   I  I G
Sbjct: 7   LHIHSYYS--DGRASPREIIAYAVANGLSVISITDHNTFQGSIAAMKIASSFKNIMVIPG 64

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLL--VSTAE 107
            ++  D  D L    +       +    LL       
Sbjct: 65  VEVRTDEGDILVYCYEEFDFPRRLE--TLLDKARDNN 99


>gi|257467828|ref|ZP_05631924.1| PHP domain protein [Fusobacterium ulcerans ATCC 49185]
 gi|317062117|ref|ZP_07926602.1| phosphotransferase domain-containing protein [Fusobacterium
          ulcerans ATCC 49185]
 gi|313687793|gb|EFS24628.1| phosphotransferase domain-containing protein [Fusobacterium
          ulcerans ATCC 49185]
          Length = 276

 Score = 61.0 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
           +H+  S  +G  +   ++ +  +     IAITD + +    E  + A   GI+ I G +
Sbjct: 6  HIHTIAS--DGTFTPEEVVKRAKSFGMKTIAITDHDTVDGLAEGKKTADEVGIEFIQGIE 63

Query: 75 LDIDMQD 81
          +  ++ +
Sbjct: 64 ISCNVDN 70


>gi|193078352|gb|ABO13325.2| putative phosphoesterase (PHP family) [Acinetobacter baumannii ATCC
           17978]
          Length = 283

 Score = 61.0 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 9/89 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+  + +G LS   ++      +   +A+TD + +         A    +Q I G 
Sbjct: 6   LHTHSN--ISDGTLSPELLVQAAVDVKLHTLALTDHDTMDGLQRARNAAQPHDLQIITGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++           ++  T       IV L
Sbjct: 64  EIS-------SQWSRPSTKKSYGVHIVAL 85


>gi|269122194|ref|YP_003310371.1| PHP domain protein [Sebaldella termitidis ATCC 33386]
 gi|268616072|gb|ACZ10440.1| PHP domain protein [Sebaldella termitidis ATCC 33386]
          Length = 279

 Score = 61.0 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS YS  +G  S++ ++ +        +++TD + +    E +++     I+ I G 
Sbjct: 4  LHMHSLYS--DGTFSVSELVKRSGEKGIKILSLTDHDTVEGLAEAAKECIENNIKFINGI 61

Query: 74 QLD 76
          ++ 
Sbjct: 62 EIS 64


>gi|113461026|ref|YP_719093.1| TrpH protein [Haemophilus somnus 129PT]
 gi|112823069|gb|ABI25158.1| possible TrpH protein [Haemophilus somnus 129PT]
          Length = 269

 Score = 61.0 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            HS  S+ +G LS   I+ +        +A+TD + +    +   +A   GI  I G +
Sbjct: 2  HCHS--SISDGTLSPQEIVIRAHQQGVNVLALTDHDTIAGLSQARTQAEQLGISLINGVE 59

Query: 75 LDIDMQD 81
          +    ++
Sbjct: 60 ISTSWEN 66


>gi|297617240|ref|YP_003702399.1| PHP domain protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145077|gb|ADI01834.1| PHP domain protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 319

 Score = 61.0 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 23/158 (14%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ----- 68
           L VHS+ S  +G L+   ++++  A     +A+TD + +         A A   +     
Sbjct: 18  LHVHSTAS--DGLLTPPELVEEAVAAGLEGMALTDHDTVAGVEAAWAYARA---RHSSFW 72

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY--QRLIELVSRMYLLDQGK 126
            I G +++ D+  +              P +  L    +    + L ++V    L   G 
Sbjct: 73  FIPGIEMNTDVGPHEVHVLGYFIDPRYEPLLNRLEEIRQARFQRNL-KMV--AKLNAMGY 129

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS 164
           +   I +  + E+   GLI         I +A      
Sbjct: 130 K---ISVERVSELAQGGLIG-----RPHIAQALMEKGY 159


>gi|254786473|ref|YP_003073902.1| PHP domain-containing protein [Teredinibacter turnerae T7901]
 gi|237686709|gb|ACR13973.1| PHP domain protein [Teredinibacter turnerae T7901]
          Length = 275

 Score = 61.0 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HSS+S  +G LS   ++ +  + Q   +A+TD + +      +++A   GI  I G 
Sbjct: 6  LHSHSSHS--DGVLSPVELVVRAKSKQVDVLALTDHDTVSGLEAAAKQATIEGIDLIPGI 63

Query: 74 QLD 76
          +  
Sbjct: 64 EFS 66


>gi|327401532|ref|YP_004342371.1| PHP domain-containing protein [Archaeoglobus veneficus SNP6]
 gi|327317040|gb|AEA47656.1| PHP domain protein [Archaeoglobus veneficus SNP6]
          Length = 216

 Score = 61.0 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ-PII- 71
          L VHS +S  +G  S+  ++          I+ITD N +  +LE  +     G+   II 
Sbjct: 6  LHVHSDHS-NDGLDSIKALIAAALEKGLNCISITDHNTVNGSLEAIEYVEEEGLPILIIP 64

Query: 72 GCQLDIDMQD 81
          G ++      
Sbjct: 65 GVEISTSDGH 74


>gi|298243918|ref|ZP_06967725.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297556972|gb|EFH90836.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 293

 Score = 61.0 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 38/225 (16%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  S   +L          +A+TD ++     E  + A    I  + G 
Sbjct: 7   LHTHSTAS--DGIYSPTELLSHAHEAGLKVMALTDHDSTNGLDEALEAARQYDIDLLPGI 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           +L+ D              +               +Q +++      L +  +   +  +
Sbjct: 65  ELNTDFSGGEVHVLGYFLEYKRP-----------AFQHILQ-----SLRNAREHRGQRMV 108

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT-FKKLFGDRL--YVN----- 185
             L E G    I +T      I +        VA   L   + +   +    Y+      
Sbjct: 109 EQLNEAG----IHITWERVREIAQG-SVGRPHVARALLEAGYVQSIPEAFEKYIGNGQVG 163

Query: 186 -LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHD 229
            + R++         V  +A  + LP+VA     +         +
Sbjct: 164 YVPRYKL---APIDAVRLIASANGLPVVA---HPYDHPGVIRLQE 202


>gi|184159491|ref|YP_001847830.1| metal-dependent phosphoesterase [Acinetobacter baumannii ACICU]
 gi|294842543|ref|ZP_06787226.1| metal-dependent phosphoesterase [Acinetobacter sp. 6014059]
 gi|183211085|gb|ACC58483.1| predicted metal-dependent phosphoesterase (PHP family)
           [Acinetobacter baumannii ACICU]
 gi|322509404|gb|ADX04858.1| Putative phosphoesterase [Acinetobacter baumannii 1656-2]
          Length = 283

 Score = 61.0 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 9/89 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+  + +G LS   ++      +   +A+TD + +         A    +Q I G 
Sbjct: 6   LHTHSN--ISDGTLSPELLVQAAVDVKLHTLALTDHDTMDGLQRAKNAAQPHDLQIISGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++           ++  T       IV L
Sbjct: 64  EIS-------SQWSRPSTKKSYGVHIVAL 85


>gi|331082964|ref|ZP_08332084.1| hypothetical protein HMPREF0992_01008 [Lachnospiraceae bacterium
          6_1_63FAA]
 gi|330399959|gb|EGG79617.1| hypothetical protein HMPREF0992_01008 [Lachnospiraceae bacterium
          6_1_63FAA]
          Length = 278

 Score = 61.0 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 2/87 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          ++ L VHS  ++ +G  + + ++         A A+TD +      E  + AC + ++ I
Sbjct: 4  YIDLHVHS--TVSDGTFTPSELVHYAIEKNLSAFALTDHDTTDGLEEAFKAACGSNLEII 61

Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +L                 +    
Sbjct: 62 PGIELSTTWNSTDVHIVGLDIDWKNTY 88


>gi|148358973|ref|YP_001250180.1| metal dependent phosphoesterase [Legionella pneumophila str.
          Corby]
 gi|296107022|ref|YP_003618722.1| metal dependent phosphoesterase [Legionella pneumophila 2300/99
          Alcoy]
 gi|148280746|gb|ABQ54834.1| metal dependent phosphoesterase [Legionella pneumophila str.
          Corby]
 gi|295648923|gb|ADG24770.1| metal dependent phosphoesterase [Legionella pneumophila 2300/99
          Alcoy]
          Length = 279

 Score = 61.0 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HSS+S  +GAL+   ++ + +  Q   +++TD + +         A    I+ + G 
Sbjct: 4  LHCHSSFS--DGALTPEELIKRASTLQVQCLSLTDHDTIAGYDALYDAAIHTNIEIVKGI 61

Query: 74 QLD 76
          +L 
Sbjct: 62 ELS 64


>gi|261492020|ref|ZP_05988595.1| putative PHP family metal-dependent phosphoesterase [Mannheimia
          haemolytica serotype A2 str. BOVINE]
 gi|261312303|gb|EEY13431.1| putative PHP family metal-dependent phosphoesterase [Mannheimia
          haemolytica serotype A2 str. BOVINE]
          Length = 272

 Score = 61.0 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++ +        +A+TD + +    E    A    ++ I G 
Sbjct: 5  LHAHSTAS--DGVLSPTELVQRAVEQGVTMLALTDHDTISGIQEAKNFAQNQPLELISGV 62

Query: 74 QLDIDMQDN 82
          ++ I  Q+ 
Sbjct: 63 EISILWQEK 71


>gi|270308859|ref|YP_003330917.1| PHP C-terminal domain protein [Dehalococcoides sp. VS]
 gi|270154751|gb|ACZ62589.1| PHP C-terminal domain protein [Dehalococcoides sp. VS]
          Length = 287

 Score = 61.0 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          +      V L +H+  ++ +G  S  NI+ K A      IAI D +NL       + A  
Sbjct: 1  MSSK---VDLHIHT--TVSDGVHSPENIIAKAAKVNMEYIAICDHDNLGGVGIALEAARK 55

Query: 65 A-GIQPIIGCQLDIDMQDN 82
             ++ I G ++  D    
Sbjct: 56 YPKLRVIPGVEISTDYSGG 74


>gi|302188868|ref|ZP_07265541.1| phosphoesterase PHP, N-terminal:PHP, C-terminal [Pseudomonas
          syringae pv. syringae 642]
          Length = 287

 Score = 61.0 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +GALS   ++ +   +    +++TD + L    E    A + G+Q + G 
Sbjct: 5  LHCHSTAS--DGALSPTALVARAHENGVRVLSLTDHDTLEGLEEARTAAHSLGMQLVNGV 62

Query: 74 QLDIDMQD 81
          +L      
Sbjct: 63 ELSCTWGG 70


>gi|254362097|ref|ZP_04978219.1| possible PHP family metal-dependent phosphoesterase [Mannheimia
          haemolytica PHL213]
 gi|261494567|ref|ZP_05991049.1| putative PHP family metal-dependent phosphoesterase [Mannheimia
          haemolytica serotype A2 str. OVINE]
 gi|153093656|gb|EDN74615.1| possible PHP family metal-dependent phosphoesterase [Mannheimia
          haemolytica PHL213]
 gi|261309758|gb|EEY10979.1| putative PHP family metal-dependent phosphoesterase [Mannheimia
          haemolytica serotype A2 str. OVINE]
          Length = 272

 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G LS   ++ +        +A+TD + +    E    A    ++ I G 
Sbjct: 5  LHAHSTAS--DGVLSPTELVQRAVEQGVTMLALTDHDTISGIQEAKNFAQNQPLELISGV 62

Query: 74 QLDIDMQDN 82
          ++ I  Q+ 
Sbjct: 63 EISILWQEK 71


>gi|255319390|ref|ZP_05360606.1| PHP domain protein [Acinetobacter radioresistens SK82]
 gi|262380854|ref|ZP_06074005.1| metal-dependent phosphoesterase [Acinetobacter radioresistens
           SH164]
 gi|255303526|gb|EET82727.1| PHP domain protein [Acinetobacter radioresistens SK82]
 gi|262297489|gb|EEY85407.1| metal-dependent phosphoesterase [Acinetobacter radioresistens
           SH164]
          Length = 288

 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 20/103 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AGIQ 68
           L  HS+  + +G LS   ++    A     +A+TD +N+       +           ++
Sbjct: 6   LHTHSN--ISDGTLSPEALVHAAVAAGVHTLALTDHDNMDGIQRA-KACSQTLEAPYSLR 62

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR 111
            I G ++           ++  T       +V L     G Q 
Sbjct: 63  IIPGAEIS-------SQWSRPATKKSYGVHVVAL-----GMQN 93


>gi|284162715|ref|YP_003401338.1| PHP domain protein [Archaeoglobus profundus DSM 5631]
 gi|284012712|gb|ADB58665.1| PHP domain protein [Archaeoglobus profundus DSM 5631]
          Length = 209

 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII-- 71
          L +HS++S  +G  S+  IL+   A    AI+ITD +N+  +LE  +      + PI+  
Sbjct: 7  LHIHSNHS--DGRSSVREILETAIAKGLKAISITDHDNINGSLEAIEIVKEEHL-PIVVI 63

Query: 72 -GCQLDIDMQD 81
           G ++      
Sbjct: 64 RGVEISTAQGH 74


>gi|289675279|ref|ZP_06496169.1| DNA polymerase III subunit alpha [Pseudomonas syringae pv.
          syringae FF5]
          Length = 41

 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIA 45
          +    SFVHL++H+ YSL++G + +  ++  +     PA+A
Sbjct: 1  MP--ASFVHLRLHTEYSLVDGLVRVKPLIKALTGMNMPAVA 39


>gi|111222140|ref|YP_712934.1| hypothetical protein FRAAL2718 [Frankia alni ACN14a]
 gi|111149672|emb|CAJ61364.1| conserved hypothetical protein [Frankia alni ACN14a]
          Length = 289

 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HSS S  +G +    ++   A      + +TD +      E +      G+  + G 
Sbjct: 9  LHSHSSES--DGTVRPKELVGLAAEAGLKYLGLTDHDTTSGIDEAAGALPR-GLTLLPGA 65

Query: 74 QL--DIDMQDNLKMTN 87
          +L   + + D  +  +
Sbjct: 66 ELSCSVTVNDRPRTVH 81


>gi|262377392|ref|ZP_06070615.1| phosphoesterase [Acinetobacter lwoffii SH145]
 gi|262307622|gb|EEY88762.1| phosphoesterase [Acinetobacter lwoffii SH145]
          Length = 283

 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 9/89 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+  + +G  S   +++         +A+TD + +       + A    I+ I G 
Sbjct: 6   LHTHSN--ISDGTFSPQQLVEAAVEKLVHTLALTDHDTMDGLALAEEAAKNHEIKIISGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++           ++  T       IV L
Sbjct: 64  EIS-------SQWSRPATKKNYGVHIVAL 85


>gi|256822096|ref|YP_003146059.1| PHP domain-containing protein [Kangiella koreensis DSM 16069]
 gi|256795635|gb|ACV26291.1| PHP domain protein [Kangiella koreensis DSM 16069]
          Length = 276

 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+  S  +G+LS   ++          +AITD +++   L   ++     I+ I G 
Sbjct: 5  LHNHTHAS--DGSLSPLELVSLAVERGVDELAITDHDSVAGVLSLREQTHDFDIKIIEGV 62

Query: 74 QLD 76
          ++ 
Sbjct: 63 EIS 65


>gi|169794699|ref|YP_001712492.1| phosphoesterase [Acinetobacter baumannii AYE]
 gi|213157930|ref|YP_002320728.1| PHP domain protein [Acinetobacter baumannii AB0057]
 gi|215482286|ref|YP_002324468.1| PHP domain protein [Acinetobacter baumannii AB307-0294]
 gi|294839341|ref|ZP_06784024.1| PHP domain protein [Acinetobacter sp. 6013113]
 gi|294857021|ref|ZP_06794790.1| PHP domain protein [Acinetobacter sp. 6013150]
 gi|301347244|ref|ZP_07227985.1| PHP domain protein [Acinetobacter baumannii AB056]
 gi|301511790|ref|ZP_07237027.1| PHP domain protein [Acinetobacter baumannii AB058]
 gi|301595296|ref|ZP_07240304.1| PHP domain protein [Acinetobacter baumannii AB059]
 gi|169147626|emb|CAM85489.1| putative phosphoesterase (PHP family) [Acinetobacter baumannii AYE]
 gi|213057090|gb|ACJ41992.1| PHP domain protein [Acinetobacter baumannii AB0057]
 gi|213988056|gb|ACJ58355.1| PHP domain protein [Acinetobacter baumannii AB307-0294]
          Length = 283

 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 9/89 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+  + +G LS   ++      +   +A+TD + +         A    +Q I G 
Sbjct: 6   LHTHSN--ISDGTLSPELLVQAAVDVKLHTLALTDHDTMDGLQRARNAAQPHDLQIISGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++           ++  T       IV L
Sbjct: 64  EIS-------SQWSRPSTKKSYGVHIVAL 85


>gi|152985099|ref|YP_001347307.1| hypothetical protein PSPA7_1926 [Pseudomonas aeruginosa PA7]
 gi|150960257|gb|ABR82282.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 295

 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G L+   ++ +        +A+TD + L    E    A   GI+ + G 
Sbjct: 5  LHCHSTAS--DGVLAPAALVQRAHEKGVGLLALTDHDTLEGLPEAHAAATRLGIELVNGV 62

Query: 74 QLDIDMQD 81
          +L      
Sbjct: 63 ELSCTWGG 70


>gi|220913252|ref|YP_002488561.1| PHP domain protein [Arthrobacter chlorophenolicus A6]
 gi|219860130|gb|ACL40472.1| PHP domain protein [Arthrobacter chlorophenolicus A6]
          Length = 282

 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G     +++   A      +A+TD ++     E S  A   G+  + G 
Sbjct: 5   LHAHSNVS--DGTEKPADVMASAARAGLDVVALTDHDSTDGWAEASAAAIEVGVALVPGM 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           ++     + + +        P+ P ++
Sbjct: 63  EVSCRTAEGISVHLLSYLHDPSHPGLL 89


>gi|320537414|ref|ZP_08037364.1| PHP domain protein [Treponema phagedenis F0421]
 gi|320145740|gb|EFW37406.1| PHP domain protein [Treponema phagedenis F0421]
          Length = 284

 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 65/218 (29%), Gaps = 36/218 (16%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  +   +          A A+TD + +    E  + A   GI+ I G 
Sbjct: 4   LHTHSTAS--DGTFTPTELAFLAKEAGLTAWALTDHDTMSGIEEAKKAADLLGIEFINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           +L I                 +            G + L        L    K  +    
Sbjct: 62  ELSIRWSPGEFHLLGLGVSPDSS-----------GLRNL--------LHKMKKGRINRSR 102

Query: 134 SWLQEIGTEGL--------IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF--GDRLY 183
              +++   G+         +    S G    A +    +  +     F K F  G   +
Sbjct: 103 QMAEKLNKAGISIDFDRLMAVTKHSSIGRPHFARYLVQEKQVKTIQEAFDKYFAKGRPFF 162

Query: 184 VNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLS 221
           +  +     +         +     +P++A   SL+LS
Sbjct: 163 IEKECIDFDEAIH-----AIKDAKGVPVLAHPMSLYLS 195


>gi|257482785|ref|ZP_05636826.1| phosphotransferase domain-containing protein [Pseudomonas
          syringae pv. tabaci ATCC 11528]
 gi|331012311|gb|EGH92367.1| phosphotransferase domain-containing protein [Pseudomonas
          syringae pv. tabaci ATCC 11528]
          Length = 287

 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +GALS   ++ +   +    +++TD + L    E    A + G+Q + G 
Sbjct: 5  LHCHSTAS--DGALSPTALVARAHENGVRVLSLTDHDTLEGLEEARTAAHSLGMQLVNGV 62

Query: 74 QLDIDMQD 81
          +L      
Sbjct: 63 ELSCTWGG 70


>gi|253577101|ref|ZP_04854422.1| PHP domain-containing protein [Paenibacillus sp. oral taxon 786
          str. D14]
 gi|251843483|gb|EES71510.1| PHP domain-containing protein [Paenibacillus sp. oral taxon 786
          str. D14]
          Length = 340

 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
           L  H+ +S  +GA +L  + +  A     AIA+TD N +   
Sbjct: 7  ELHTHTLHS--DGAQTLEELAEGAAKLGFDAIALTDHNTMTGL 47


>gi|312138886|ref|YP_004006222.1| phosphatase [Rhodococcus equi 103S]
 gi|311888225|emb|CBH47537.1| putative phosphatase [Rhodococcus equi 103S]
          Length = 298

 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA---GIQPI 70
           L  HS+ S  +G  S   ++ K AA     +AITD +         ++A AA   G++ +
Sbjct: 5   LHTHSTAS--DGTDSPAELVRKAAASGVDVLAITDHDTTAG----WKEAAAALPSGLRLV 58

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
            G ++  +         +G+   P    ++  
Sbjct: 59  RGMEMSCE--------GRGEDGRPVAVHLLAY 82


>gi|325676407|ref|ZP_08156085.1| PHP domain protein [Rhodococcus equi ATCC 33707]
 gi|325552585|gb|EGD22269.1| PHP domain protein [Rhodococcus equi ATCC 33707]
          Length = 298

 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA---GIQPI 70
           L  HS+ S  +G  S   ++ K AA     +AITD +         ++A AA   G++ +
Sbjct: 5   LHTHSTAS--DGTDSPAELVRKAAASGVDVLAITDHDTTAG----WKEAAAALPSGLRLV 58

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
            G ++  +         +G+   P    ++  
Sbjct: 59  RGMEMSCE--------GRGEDGRPVAVHLLAY 82


>gi|325133599|gb|EGC56260.1| PHP domain protein [Neisseria meningitidis M13399]
          Length = 278

 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHS--TVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQGRLKRL 101


>gi|330960479|gb|EGH60739.1| phosphoesterase PHP [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 287

 Score = 60.6 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +GALS   ++ +   +    +++TD + L    E    A + G+Q + G 
Sbjct: 5   LHCHSTAS--DGALSPTALVARAHENGVRVLSLTDHDTLEGLEEARAAAHSLGMQLVNGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEG 108
           +L         +   G       P++   +    EG
Sbjct: 63  ELSCTWG-GATIHVLGYGFDTQAPALTAAIARLHEG 97


>gi|78188459|ref|YP_378797.1| phosphoesterase PHP-like [Chlorobium chlorochromatii CaD3]
 gi|78170658|gb|ABB27754.1| Phosphoesterase PHP-like protein [Chlorobium chlorochromatii
          CaD3]
          Length = 286

 Score = 60.6 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G  +   I++K A     AI+ITD +++    +    A   G++ I G 
Sbjct: 18 LHIHTKCS--DGLFTPEEIVEKAARIGLNAISITDHDSVLGIDKAKPLALEKGVELIAGV 75

Query: 74 QLD 76
          ++ 
Sbjct: 76 EMS 78


>gi|325127572|gb|EGC50495.1| PHP domain protein [Neisseria meningitidis N1568]
          Length = 278

 Score = 60.6 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHS--TVSDGMLSPTEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAKVRQGRLKRL 101


>gi|169831226|ref|YP_001717208.1| phosphotransferase domain-containing protein [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638070|gb|ACA59576.1| PHP C-terminal domain protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 270

 Score = 60.6 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 69/213 (32%), Gaps = 41/213 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII-G 72
           L VH++ S  +G ++   ++    A    AIAITD + +       Q+A A     +I G
Sbjct: 5   LHVHTTAS--DGTVTPAGVVQLARALGLGAIAITDHDTVSGVAPALQRAGATDGPLVIPG 62

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
            ++      +          +        L                  + +  ++     
Sbjct: 63  IEIS---ASHQGRDVHILGYYVDTKHAGFLAR----------------IKELAEKRAERA 103

Query: 133 LSWLQEIGTEGLIMLT------GGSSG----PIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
              +  + + GL +         G +      I  A         + R   F +  G   
Sbjct: 104 ARMIARLQSLGLAVTLNDVLDFAGPASLGRPHIADALLRAGI--VKNRAEAFSRWIGRDC 161

Query: 183 --YVNLQRHRGYDRYRESQVVQLAYTHELPLVA 213
             YV+ Q+   ++      +V+LA    +P++A
Sbjct: 162 PGYVSRQQVSPFEAV---ALVRLAK--GVPVLA 189


>gi|254518395|ref|ZP_05130451.1| metal-dependent phosphoesterase [Clostridium sp. 7_2_43FAA]
 gi|226912144|gb|EEH97345.1| metal-dependent phosphoesterase [Clostridium sp. 7_2_43FAA]
          Length = 278

 Score = 60.6 bits (145), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS  S  +G  + ++I+          +++TD + L    E   +A A  ++ I G 
Sbjct: 6  LHIHSICS--DGRFTPSDIVKMAKEKNLDYVSLTDHDTLTGIKEALSEAEALNVKLIPGI 63

Query: 74 QLDIDMQDN 82
          +L  +    
Sbjct: 64 ELSTEYNGE 72


>gi|169632422|ref|YP_001706158.1| phosphoesterase [Acinetobacter baumannii SDF]
 gi|169151214|emb|CAO99894.1| putative phosphoesterase (PHP family) [Acinetobacter baumannii]
          Length = 283

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+  + +G LS   ++      +   +A+TD + +         A    +Q I G 
Sbjct: 6  LHTHSN--ISDGTLSPELLVQAAVDVKLHTLALTDHDTMDGLQRARNAAQPHDLQIISGV 63

Query: 74 QLD 76
          ++ 
Sbjct: 64 EIS 66


>gi|254168402|ref|ZP_04875247.1| hypothetical protein ABOONEI_324 [Aciduliprofundum boonei T469]
 gi|289595773|ref|YP_003482469.1| PHP domain protein [Aciduliprofundum boonei T469]
 gi|197622683|gb|EDY35253.1| hypothetical protein ABOONEI_324 [Aciduliprofundum boonei T469]
 gi|289533560|gb|ADD07907.1| PHP domain protein [Aciduliprofundum boonei T469]
          Length = 216

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII-GC 73
            HS+YS  +G + + ++L +       AIAITD N +  AL+    A   GI  +I G 
Sbjct: 6  HTHSAYSP-DGKVPIKDMLKRAKKIGLGAIAITDHNEIKGALK----AKKLGILEVIRGI 60

Query: 74 QLDIDMQD 81
          ++      
Sbjct: 61 EVSTAQGH 68


>gi|311898239|dbj|BAJ30647.1| hypothetical protein KSE_48690 [Kitasatospora setae KM-6054]
          Length = 282

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  S   ++    A     +A+TD + +    E +      G+  + G 
Sbjct: 5  LHAHSNAS--DGTDSPAELVANAVAAGLDVVALTDHDTVSGYGEAAAAVAGTGLVLVPGA 62

Query: 74 QLD 76
          +L 
Sbjct: 63 ELS 65


>gi|261393162|emb|CAX50774.1| conserved hypothetical protein [Neisseria meningitidis 8013]
          Length = 278

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHS--TVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGISEARAEADKLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDERDENLQNLLAQVRQGRLKRL 101


>gi|254671588|emb|CBA09253.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
 gi|319409853|emb|CBY90165.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
          Length = 278

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHS--TVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQGRLKRL 101


>gi|261401660|ref|ZP_05987785.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           lactamica ATCC 23970]
 gi|269208239|gb|EEZ74694.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           lactamica ATCC 23970]
          Length = 278

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHS--TVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQGRLKRL 101


>gi|254804361|ref|YP_003082582.1| putative metal-dependent phosphoesterase [Neisseria meningitidis
           alpha14]
 gi|254667903|emb|CBA04043.1| putative metal-dependent phosphoesterase [Neisseria meningitidis
           alpha14]
          Length = 278

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHS--TVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQGRLKRL 101


>gi|309378414|emb|CBX22967.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 278

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHS--TVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQGRLKRL 101


>gi|225412421|ref|ZP_03761610.1| hypothetical protein CLOSTASPAR_05644 [Clostridium asparagiforme
          DSM 15981]
 gi|225042056|gb|EEG52302.1| hypothetical protein CLOSTASPAR_05644 [Clostridium asparagiforme
          DSM 15981]
          Length = 318

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS  S+ +G L    ++ +  +    A A+TD N++       ++A   GI+   G 
Sbjct: 21 LHMHSVISI-DGELEPEEVIRRAVSRGIRAAALTDHNSVRGVSRAWEEAARLGIRLAKGV 79

Query: 74 QLDIDMQDN 82
          +LD  + + 
Sbjct: 80 ELDCRLGER 88


>gi|261378280|ref|ZP_05982853.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           cinerea ATCC 14685]
 gi|269145371|gb|EEZ71789.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           cinerea ATCC 14685]
          Length = 278

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHS--TVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQGRLKRL 101


>gi|28869016|ref|NP_791635.1| PHP domain-containing protein [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213968656|ref|ZP_03396798.1| PHP domain protein [Pseudomonas syringae pv. tomato T1]
 gi|301384614|ref|ZP_07233032.1| PHP domain protein [Pseudomonas syringae pv. tomato Max13]
 gi|302062061|ref|ZP_07253602.1| PHP domain protein [Pseudomonas syringae pv. tomato K40]
 gi|302130739|ref|ZP_07256729.1| PHP domain protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28852256|gb|AAO55330.1| PHP domain protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926589|gb|EEB60142.1| PHP domain protein [Pseudomonas syringae pv. tomato T1]
 gi|331017428|gb|EGH97484.1| PHP domain protein [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 287

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +GALS   ++ +        +++TD + L    E    A + G+Q + G 
Sbjct: 5   LHCHSTAS--DGALSPTALVARAHEYGVRVLSLTDHDTLEGLEEARTAAHSLGMQLVNGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEG 108
           +L         +   G       P++   +    EG
Sbjct: 63  ELSCTWG-GATIHVLGYGFDTQAPALTEAIARLHEG 97


>gi|66046815|ref|YP_236656.1| phosphoesterase PHP, N-terminal:PHP, C-terminal [Pseudomonas
          syringae pv. syringae B728a]
 gi|63257522|gb|AAY38618.1| Phosphoesterase PHP, N-terminal:PHP, C-terminal [Pseudomonas
          syringae pv. syringae B728a]
 gi|330972286|gb|EGH72352.1| phosphoesterase PHP [Pseudomonas syringae pv. aceris str.
          M302273PT]
          Length = 287

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +GALS   ++ +   +    +++TD + L    E    A + G+Q + G 
Sbjct: 5  LHCHSTAS--DGALSPTALVARAHENGVRVLSLTDHDTLEGLEEARAAAHSLGMQLVNGV 62

Query: 74 QLDIDMQD 81
          +L      
Sbjct: 63 ELSCTWGG 70


>gi|330966748|gb|EGH67008.1| PHP domain-containing protein [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 287

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +GALS   ++ +        +++TD + L    E    A + G+Q + G 
Sbjct: 5   LHCHSTAS--DGALSPTALVARAHEYGVRVLSLTDHDTLEGLEEARTAAHSLGMQLVNGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEG 108
           +L         +   G       P++   +    EG
Sbjct: 63  ELSCTWG-GATIHVLGYGFDTQAPALTEAIARLHEG 97


>gi|254673559|emb|CBA09034.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
          Length = 278

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHS--TVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQGRLKRL 101


>gi|33152479|ref|NP_873832.1| metal-dependent phosphoesterase [Haemophilus ducreyi 35000HP]
 gi|33148702|gb|AAP96221.1| TrpH-like protein, probable metal-dependent phosphoesterase
          [Haemophilus ducreyi 35000HP]
          Length = 275

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G L+   ++ +    +   +A+TD + L    E    A +  IQ I G 
Sbjct: 5  LHSHSTAS--DGMLTPTELILRAVEQKVDVLALTDHDTLAGIQEAKIAAESQPIQLISGV 62

Query: 74 QLD 76
          ++ 
Sbjct: 63 EIS 65


>gi|281413940|ref|ZP_06245682.1| DNA polymerase III, alpha subunit [Micrococcus luteus NCTC 2665]
          Length = 204

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 59/202 (29%), Gaps = 35/202 (17%)

Query: 91  TPFPTVPSIVLLVSTA---EGYQRLIELVSRMYLL---DQGKQSV-------------RI 131
           +       +V+L        GY+ L ELVS  +          S              R+
Sbjct: 8   SEDEDAGRVVVLARGGCHGSGYRSLCELVSAAHARTTGGAAGGSPWASVAELAAAAAGRV 67

Query: 132 CLSWLQEIGTEG-----LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVN 185
                     +      L +L G     + R             L  +K        + +
Sbjct: 68  P----TAANRDNPPTPELFVLLG-PDSDVGRHLARRRYAAGLAALRRWKAALPAGSPHAD 122

Query: 186 LQRH-----RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVV 240
           +  H     R  D     + ++ A    +P V TN   + + +     DVL AV   + +
Sbjct: 123 VVTHLSAPGRRLDTGHAVKTLRAARQARIPAVLTNAVRYAAPDGAATADVLDAVRALSSL 182

Query: 241 SQKDRPRVTPDHYLKNRSEMVS 262
                 +     +LK+ + M  
Sbjct: 183 DALHDLQPNGQGWLKSTAAMHR 204


>gi|330876949|gb|EGH11098.1| PHP domain-containing protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 287

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +GALS   ++ +        +++TD + L    E    A + G+Q + G 
Sbjct: 5   LHCHSTAS--DGALSPTALVARAHEYGVRVLSLTDHDTLEGLEEARTAAHSLGMQLVNGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEG 108
           +L         +   G       P++   +    EG
Sbjct: 63  ELSCTWG-GATIHVLGYGFDTQAPALTEAIARLHEG 97


>gi|295697614|ref|YP_003590852.1| PHP domain protein [Bacillus tusciae DSM 2912]
 gi|295413216|gb|ADG07708.1| PHP domain protein [Bacillus tusciae DSM 2912]
          Length = 285

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 42/160 (26%), Gaps = 22/160 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+  S  + + S+  ++ +        +AITD +         +   A G+  + G 
Sbjct: 6   LHCHTRMS--DSSRSIEEVIARAKEVGVDQLAITDHDTTAGLNRAIEIGRAQGVNIVPGI 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE-LVSRMYLLDQG------K 126
           ++        +  +                   +  + L   +  R +           +
Sbjct: 64  EISAYDFARGRRAHLLGLYVEPGH---------KALESLCRPMRERRHRASFEMVGKLQR 114

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
               I    +Q     G    TG     I  A        
Sbjct: 115 AGYEITWEEVQRYARGG----TGVYKQHIMHALIDRGYAE 150


>gi|300855365|ref|YP_003780349.1| putative metal-dependent phosphoesterase [Clostridium ljungdahlii
          DSM 13528]
 gi|300435480|gb|ADK15247.1| predicted metal-dependent phosphoesterase, PHP family
          [Clostridium ljungdahlii DSM 13528]
          Length = 285

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          + K   F    +H++ S  +G L    ++     +    IAITD + L    E   +   
Sbjct: 1  MYKKGDF---HLHTNAS--DGNLFPAKLVCMAKREGVDIIAITDHDTLSGIDEALMEGKK 55

Query: 65 AGIQPIIGCQLD 76
           GI+ I G +L 
Sbjct: 56 IGIKVIPGIELS 67


>gi|325143826|gb|EGC66142.1| PHP domain protein [Neisseria meningitidis M01-240013]
 gi|325206740|gb|ADZ02193.1| PHP domain protein [Neisseria meningitidis M04-240196]
          Length = 278

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHS--TVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQGRLKRL 101


>gi|188588182|ref|YP_001921951.1| PHP domain protein [Clostridium botulinum E3 str. Alaska E43]
 gi|188498463|gb|ACD51599.1| PHP domain protein [Clostridium botulinum E3 str. Alaska E43]
          Length = 277

 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 70/201 (34%), Gaps = 29/201 (14%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +H+  S  +G LS   ++ +   +    +AITD + L            AGI+   G +
Sbjct: 7   HIHT--SSSDGLLSPTEVVKRAKENSVSYLAITDHDTLSGL--------DAGIK--CGKE 54

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
           L + +   ++++ Q          ++        +    +L++   L       +     
Sbjct: 55  LGVTIIPGIELSTQ---YNNESIHLLGFFKDNN-FNN-SKLINE--LDKIKNHRIIRAKE 107

Query: 135 WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG---DRLYVNLQRHRG 191
            ++++ +E  I+++       D         +A   +       G   D  Y+  Q   G
Sbjct: 108 IIKKLKSEFNIIIS------FDDVLANGKDTIARPHIARAIIDAGYDYDNEYI-FQNFIG 160

Query: 192 YDRYRESQVVQLAYTHELPLV 212
            D       ++L+    + L+
Sbjct: 161 KDCKAYVPTLKLSTEDGISLL 181


>gi|298488127|ref|ZP_07006164.1| Protein trpH [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298157406|gb|EFH98489.1| Protein trpH [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 287

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +GALS   ++ +   +    +++TD + L    E    A + G+Q + G 
Sbjct: 5  LHCHSTAS--DGALSPTALVARAHENGVRVLSLTDHDTLEGLEEARAAAHSLGMQLVNGV 62

Query: 74 QLDIDMQD 81
          +L      
Sbjct: 63 ELSCTWGG 70


>gi|219683322|ref|YP_002469705.1| PHP C-terminal domain protein [Bifidobacterium animalis subsp.
          lactis AD011]
 gi|219620972|gb|ACL29129.1| PHP C-terminal domain protein [Bifidobacterium animalis subsp.
          lactis AD011]
          Length = 289

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+ +S  +G  +   ++ +  +     +AI D +      E  Q +    +  + G 
Sbjct: 12 LHCHTVFS--DGTRTPREMVQEAKSLGLHGVAIADHDTTAGWEEAGQASHDLHLPLMRGT 69

Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSI 99
          ++      N+ +        P    I
Sbjct: 70 EIT-AQDGNVSVHMLAYLYDPRNRHI 94


>gi|71733848|ref|YP_275691.1| phosphotransferase domain-containing protein [Pseudomonas
          syringae pv. phaseolicola 1448A]
 gi|289624035|ref|ZP_06456989.1| phosphotransferase domain-containing protein [Pseudomonas
          syringae pv. aesculi str. NCPPB3681]
 gi|289650384|ref|ZP_06481727.1| phosphotransferase domain-containing protein [Pseudomonas
          syringae pv. aesculi str. 2250]
 gi|71554401|gb|AAZ33612.1| PHP domain protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320323238|gb|EFW79326.1| phosphotransferase domain-containing protein [Pseudomonas
          syringae pv. glycinea str. B076]
 gi|320329731|gb|EFW85720.1| phosphotransferase domain-containing protein [Pseudomonas
          syringae pv. glycinea str. race 4]
 gi|330866209|gb|EGH00918.1| phosphotransferase domain-containing protein [Pseudomonas
          syringae pv. aesculi str. 0893_23]
 gi|330881428|gb|EGH15577.1| phosphotransferase domain-containing protein [Pseudomonas
          syringae pv. glycinea str. race 4]
          Length = 287

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +GALS   ++ +   +    +++TD + L    E    A + G+Q + G 
Sbjct: 5  LHCHSTAS--DGALSPTALVARAHENGVRVLSLTDHDTLEGLEEARAAAHSLGMQLVNGV 62

Query: 74 QLDIDMQD 81
          +L      
Sbjct: 63 ELSCTWGG 70


>gi|30249686|ref|NP_841756.1| phosphotransferase domain-containing protein [Nitrosomonas europaea
           ATCC 19718]
 gi|30180723|emb|CAD85635.1| PHP domain N-terminal region:PHP domain C-terminal region
           [Nitrosomonas europaea ATCC 19718]
          Length = 316

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 18/130 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS + +L   A      +A+TD +++    E S+ A    I  I G 
Sbjct: 17  LHSHS--TISDGMLSPSRLLAHAAVRGVNVLALTDHDDIAGLSEASRSAQQENITLIRGV 74

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++ +           G    P  P +       EG +          + D      R   
Sbjct: 75  EISVTWHGRTLHI-LGLGINPEHPPLT------EGLK---------KIRDGRMDRARAIA 118

Query: 134 SWLQEIGTEG 143
           + L + G  G
Sbjct: 119 AQLDKFGIHG 128


>gi|325204781|gb|ADZ00235.1| PHP domain protein [Neisseria meningitidis M01-240355]
          Length = 278

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHS--TVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQGRLKRL 101


>gi|325123443|gb|ADY82966.1| putative phosphoesterase (PHP family) [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 283

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 9/89 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+  + +G LS   ++          +A+TD + +         A    +  I G 
Sbjct: 6   LHTHSN--ISDGTLSPELLVQAAIDVNLHTLALTDHDTMDGLQRAKIAAQGHDLNIISGA 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++           ++  T       IV L
Sbjct: 64  EIS-------SQWSRPTTKKSYGVHIVAL 85


>gi|289177399|gb|ADC84645.1| PHP domain containing protein (TRPH) [Bifidobacterium animalis
           subsp. lactis BB-12]
          Length = 304

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+ +S  +G  +   ++ +  +     +AI D +      E  Q +    +  + G 
Sbjct: 27  LHCHTVFS--DGTRTPREMVQEAKSLGLHGVAIADHDTTAGWEEAGQASHDLHLPLMRGT 84

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSI 99
           ++      N+ +        P    I
Sbjct: 85  EIT-AQDGNVSVHMLAYLYDPRNRHI 109


>gi|225388551|ref|ZP_03758275.1| hypothetical protein CLOSTASPAR_02287 [Clostridium asparagiforme
          DSM 15981]
 gi|225045396|gb|EEG55642.1| hypothetical protein CLOSTASPAR_02287 [Clostridium asparagiforme
          DSM 15981]
          Length = 146

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 9/84 (10%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN-NLF-SALEFSQKACA------A 65
          L  H+S S      SL+ +    A     AI ITD    +   A+               
Sbjct: 8  LHTHTSVS-QHAYSSLDEMARSAAELGLAAIGITDHGPGMMDGAIRHHFYCMRGLPKAVH 66

Query: 66 GIQPIIGCQLDIDMQDNLKMTNQG 89
          G++ + G +++I   D     ++ 
Sbjct: 67 GLRLVTGAEVNIKDFDGGLDLDRD 90


>gi|313669040|ref|YP_004049324.1| hypothetical protein NLA_17620 [Neisseria lactamica ST-640]
 gi|313006502|emb|CBN87966.1| conserved hypothetical protein [Neisseria lactamica 020-06]
          Length = 278

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHS--TVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDERDENLQNLLAQVRQGRLKRL 101


>gi|282891350|ref|ZP_06299852.1| hypothetical protein pah_c050o149 [Parachlamydia acanthamoebae
          str. Hall's coccus]
 gi|281498847|gb|EFB41164.1| hypothetical protein pah_c050o149 [Parachlamydia acanthamoebae
          str. Hall's coccus]
          Length = 280

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 10/66 (15%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPI 70
            HS+ S  +G  S   ++D         ++ITD ++    +E  Q     A   GI+ +
Sbjct: 9  HCHSTCS--DGTCSPEELVDIAFKSGLKGLSITDHDS----VEAYQSAVEPAAKLGIKLL 62

Query: 71 IGCQLD 76
           G +  
Sbjct: 63 SGVEFS 68


>gi|257452728|ref|ZP_05618027.1| metal-dependent phosphoesterase [Fusobacterium sp. 3_1_5R]
 gi|317059269|ref|ZP_07923754.1| metal-dependent phosphoesterase [Fusobacterium sp. 3_1_5R]
 gi|313684945|gb|EFS21780.1| metal-dependent phosphoesterase [Fusobacterium sp. 3_1_5R]
          Length = 272

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+ S  +G+ S   I+      +  AIA+TD + +    E  Q+A   GI+ + G 
Sbjct: 5  LHLHSTAS--DGSFSPKQIVQLALLKKMKAIALTDHDTIDGLYEAKQEAEKWGIEFVPGI 62

Query: 74 QLD 76
          +  
Sbjct: 63 EFS 65


>gi|183602363|ref|ZP_02963729.1| hypothetical protein BIFLAC_04940 [Bifidobacterium animalis
          subsp. lactis HN019]
 gi|241191283|ref|YP_002968677.1| hypothetical protein Balac_1260 [Bifidobacterium animalis subsp.
          lactis Bl-04]
 gi|241196689|ref|YP_002970244.1| hypothetical protein Balat_1260 [Bifidobacterium animalis subsp.
          lactis DSM 10140]
 gi|183218282|gb|EDT88927.1| hypothetical protein BIFLAC_04940 [Bifidobacterium animalis
          subsp. lactis HN019]
 gi|240249675|gb|ACS46615.1| hypothetical protein Balac_1260 [Bifidobacterium animalis subsp.
          lactis Bl-04]
 gi|240251243|gb|ACS48182.1| hypothetical protein Balat_1260 [Bifidobacterium animalis subsp.
          lactis DSM 10140]
 gi|295794276|gb|ADG33811.1| hypothetical protein BalV_1223 [Bifidobacterium animalis subsp.
          lactis V9]
          Length = 294

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+ +S  +G  +   ++ +  +     +AI D +      E  Q +    +  + G 
Sbjct: 17 LHCHTVFS--DGTRTPREMVQEAKSLGLHGVAIADHDTTAGWEEAGQASHDLHLPLMRGT 74

Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSI 99
          ++      N+ +        P    I
Sbjct: 75 EIT-AQDGNVSVHMLAYLYDPRNRHI 99


>gi|78485575|ref|YP_391500.1| PHP-like [Thiomicrospira crunogena XCL-2]
 gi|78363861|gb|ABB41826.1| conserved hypothetical protein with PHP domain [Thiomicrospira
          crunogena XCL-2]
          Length = 281

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 4/82 (4%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ-KACAAGIQPIIGC 73
            H+  S+ +G+L+   ++D         +AITD +      E  +  A    ++ I   
Sbjct: 6  HCHT--SISDGSLTPKALVDLAKEKGITTLAITDHDTTHG-YELIKDYAKEQDLELIAAS 62

Query: 74 QLDIDMQDNLKMTNQGKTPFPT 95
          ++    + +             
Sbjct: 63 EISCQWKGHTIHIVGLDIDIDN 84


>gi|255028893|ref|ZP_05300844.1| hypothetical protein LmonL_06366 [Listeria monocytogenes LO28]
          Length = 173

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            L+ + I       +   G N ++AA V   +  +T+KG  + ++T S+ +KE  A  FP
Sbjct: 4    LQNLAITRLANLSS---GKNYQVAAYVHEVKSIRTKKGETMCFLTISDDSKELSAVMFP 59


>gi|296188693|ref|ZP_06857081.1| PHP domain protein [Clostridium carboxidivorans P7]
 gi|296046957|gb|EFG86403.1| PHP domain protein [Clostridium carboxidivorans P7]
          Length = 279

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          + K   F HL      +  +G  S   +++  + +    ++ITD + ++  LE   +   
Sbjct: 1  MYKKGDF-HLHT----TASDGKFSPKELVNMASKENIDIMSITDHDTIYGVLEAVLEGKK 55

Query: 65 AGIQPIIGCQLD 76
           GI+ I G +L 
Sbjct: 56 LGIKVIPGLELS 67


>gi|147919696|ref|YP_686559.1| metal-dependent phosphoesterase [uncultured methanogenic archaeon
          RC-I]
 gi|110621955|emb|CAJ37233.1| putative metal-dependent phosphoesterase (PHP family) [uncultured
          methanogenic archaeon RC-I]
          Length = 219

 Score = 59.8 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS YS  +G + + ++L          IAITD + +   +E  +     GI  I GC
Sbjct: 6  LHSHSRYS-KDGIMDVRDLLKIAKKRGLDGIAITDHDTIRGGMEAVKL-KPEGIDVICGC 63

Query: 74 QLDIDMQD 81
          ++  D  D
Sbjct: 64 EVKTDRGD 71


>gi|291456380|ref|ZP_06595770.1| putative PHP domain protein [Bifidobacterium breve DSM 20213]
 gi|291381657|gb|EFE89175.1| putative PHP domain protein [Bifidobacterium breve DSM 20213]
          Length = 297

 Score = 59.8 bits (143), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 78/249 (31%), Gaps = 66/249 (26%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H+++S  +G  +   + ++  A     ++I+D +      +    A   G+  + G +
Sbjct: 21  HCHTAFS--DGTETPAVLAEQSKAVGLKGVSISDHDTTAGWPQAEAAARKVGLPLLRGTE 78

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEGY----QRLIELVSR----------M 119
           +     D++ +   G    PT   IV L   T +      QR++EL+S+           
Sbjct: 79  IT-ATDDSVSVHMLGFQYDPTNQCIVDLFARTRQARLRRTQRMVELMSKDLPISWESVLA 137

Query: 120 YLLDQGK---QSVRICLSWLQE------------------------------------IG 140
            + + G        I  + +                                       G
Sbjct: 138 QVKEGGNTTIGRPHIADALVAAGVYQNRSEAFADAVSASSKYYIPTPSPTAREVVAAVKG 197

Query: 141 TEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQV 200
            +G+I++    +G + R     S +  E  +            + +         RE ++
Sbjct: 198 ADGVILI--AHAGDLSRNRRLLSDEQIEALIAEGLDG------LEVWHRGNLPEQRE-RL 248

Query: 201 VQLAYTHEL 209
           + +   + L
Sbjct: 249 LGICARYHL 257


>gi|73748512|ref|YP_307751.1| phosphotransferase domain-containing protein [Dehalococcoides sp.
           CBDB1]
 gi|147669293|ref|YP_001214111.1| phosphotransferase domain-containing protein [Dehalococcoides sp.
           BAV1]
 gi|289432560|ref|YP_003462433.1| PHP domain protein [Dehalococcoides sp. GT]
 gi|73660228|emb|CAI82835.1| PHP domain protein [Dehalococcoides sp. CBDB1]
 gi|146270241|gb|ABQ17233.1| PHP C-terminal domain protein [Dehalococcoides sp. BAV1]
 gi|288946280|gb|ADC73977.1| PHP domain protein [Dehalococcoides sp. GT]
          Length = 219

 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 31/170 (18%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L VH++YS+ +      +++ K        I++ D      AL     A  + I+ II  
Sbjct: 6   LHVHTNYSM-DSNTQPKDLISKCVEKGINCISLCDHGTAEGAL---MLAKESPIKIII-S 60

Query: 74  QLDIDMQDNL------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           +  +     +      +    G +    V  I      A+G      LV   +  D  + 
Sbjct: 61  EEVLTPHGEIMGMFLKESIPSGISVDECVSRI----K-AQG-----ALVCIPHPYDGLRG 110

Query: 128 SVRICLSWLQEIGTEGLI-MLTGGSSGPID--RAFFFNSSQVAEKRLLTF 174
           S  I    L+ + +EG I +L       +   R     S + A K    +
Sbjct: 111 SALIDTE-LERLASEGKIDVL------EVFNSRTLLNGSLKKARKLAKQY 153


>gi|160937034|ref|ZP_02084397.1| hypothetical protein CLOBOL_01923 [Clostridium bolteae ATCC
          BAA-613]
 gi|158439935|gb|EDP17683.1| hypothetical protein CLOBOL_01923 [Clostridium bolteae ATCC
          BAA-613]
          Length = 279

 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          S+V L VHS+ S  +G LS   ++         AIA+TD + 
Sbjct: 2  SYVDLHVHSNAS--DGTLSPEQVVRLAHEAGLSAIALTDHDT 41


>gi|218767592|ref|YP_002342104.1| hypothetical protein NMA0635 [Neisseria meningitidis Z2491]
 gi|121051600|emb|CAM07900.1| hypothetical protein NMA0635 [Neisseria meningitidis Z2491]
          Length = 278

 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHS--TVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDERDENLQNLLAQVRQGRLKRL 101


>gi|315227024|ref|ZP_07868811.1| PHP family metal-dependent phosphoesterase [Parascardovia
          denticolens DSM 10105]
 gi|315119474|gb|EFT82607.1| PHP family metal-dependent phosphoesterase [Parascardovia
          denticolens DSM 10105]
          Length = 305

 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+++S  +G ++   +LD+ +      +A+TD +   S +   + A       I G 
Sbjct: 28 LHCHTTFS--DGTVTPQGMLDQASRLGLAGVAVTDHDTTASWVPAKESALDLPFPLIRGT 85

Query: 74 QLD 76
          ++ 
Sbjct: 86 EIT 88


>gi|294787407|ref|ZP_06752660.1| PHP domain N- region family protein [Parascardovia denticolens
          F0305]
 gi|294484763|gb|EFG32398.1| PHP domain N- region family protein [Parascardovia denticolens
          F0305]
          Length = 302

 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+++S  +G ++   +LD+ +      +A+TD +   S +   + A       I G 
Sbjct: 25 LHCHTTFS--DGTVTPQGMLDQASRLGLAGVAVTDHDTTASWVPAKESALDLPFPLIRGT 82

Query: 74 QLD 76
          ++ 
Sbjct: 83 EIT 85


>gi|116051190|ref|YP_789979.1| PHP domain-containing protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115586411|gb|ABJ12426.1| putative PHP domain protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 295

 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 2/84 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G L+   ++ +        +A+TD + L    E  Q A    I+ + G 
Sbjct: 5  LHCHSTAS--DGVLAPAALVQRAHEKGVGLLALTDHDTLEGLPEAHQAAARLSIELVNGV 62

Query: 74 QLDIDMQDNLKMTNQGKTPFPTVP 97
          +L                     P
Sbjct: 63 ELSCTWGGATIHVLGYGFDLDAAP 86


>gi|262374187|ref|ZP_06067463.1| metal-dependent phosphoesterase [Acinetobacter junii SH205]
 gi|262310745|gb|EEY91833.1| metal-dependent phosphoesterase [Acinetobacter junii SH205]
          Length = 283

 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 9/89 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+   + +G  S   ++      +   +A+TD + +       + A    IQ I G 
Sbjct: 6   LHTHTH--ISDGTFSPEQLVQAAVDLKIHMLAVTDHDTIDGLSSARKYAQDHDIQIISGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++           ++  T       IV L
Sbjct: 64  EIS-------SQWSRPNTKKSYGVHIVAL 85


>gi|167037597|ref|YP_001665175.1| phosphotransferase domain-containing protein [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|167040259|ref|YP_001663244.1| phosphotransferase domain-containing protein [Thermoanaerobacter
          sp. X514]
 gi|300914343|ref|ZP_07131659.1| PHP domain protein [Thermoanaerobacter sp. X561]
 gi|307724421|ref|YP_003904172.1| PHP domain-containing protein [Thermoanaerobacter sp. X513]
 gi|320116012|ref|YP_004186171.1| PHP domain-containing protein [Thermoanaerobacter brockii subsp.
          finnii Ako-1]
 gi|166854499|gb|ABY92908.1| PHP C-terminal domain protein [Thermoanaerobacter sp. X514]
 gi|166856431|gb|ABY94839.1| PHP C-terminal domain protein [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|300889278|gb|EFK84424.1| PHP domain protein [Thermoanaerobacter sp. X561]
 gi|307581482|gb|ADN54881.1| PHP domain protein [Thermoanaerobacter sp. X513]
 gi|319929103|gb|ADV79788.1| PHP domain protein [Thermoanaerobacter brockii subsp. finnii
          Ako-1]
          Length = 278

 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F  L +HS  S  +G  S + ++          I++TD + +    E  + +    I+ I
Sbjct: 2  FADLHMHSKAS--DGTNSPSEVVRLAKEHGLSCISLTDHDTVDGLEEAMEASAKYEIEVI 59

Query: 71 IGCQLDIDMQD 81
           G + +   Q+
Sbjct: 60 PGIEFNCYYQN 70


>gi|293611115|ref|ZP_06693414.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826767|gb|EFF85133.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 283

 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 9/89 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+  + +G LS   ++          +A+TD + +         A    +  I G 
Sbjct: 6   LHTHSN--ISDGTLSPELLVQAAIDVNLHTLALTDHDTMDGLQRAKIAAQGHDLNIISGA 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++           ++  T       IV L
Sbjct: 64  EIS-------SQWSRPTTKKSYGVHIVAL 85


>gi|167628565|ref|YP_001679064.1| hypothetical protein HM1_0436 [Heliobacterium modesticaldum Ice1]
 gi|167591305|gb|ABZ83053.1| conserved domain protein [Heliobacterium modesticaldum Ice1]
          Length = 286

 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 11/102 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII-G 72
           L  HS+ S  +G+L+   ++     +    +A+TD + +    E  +     G+Q I+ G
Sbjct: 6   LHSHSTAS--DGSLTPRELVALAKREGVGLMALTDHDTVDGVAEARKAGEELGVQ-ILNG 62

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            +L +D +   +M   G    P  P +       EG +RLI 
Sbjct: 63  VELSVDHEHR-EMHLLGYRIDPGNPVL------QEGLRRLIH 97


>gi|148244944|ref|YP_001219638.1| hypothetical protein COSY_0808 [Candidatus Vesicomyosocius
          okutanii HA]
 gi|146326771|dbj|BAF61914.1| conserved hypothetical protein [Candidatus Vesicomyosocius
          okutanii HA]
          Length = 276

 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS YS  +G LS   ++          +A+TD + +    E S +A    +Q + G 
Sbjct: 5  LHNHSYYS--DGILSPTEVVRLANKQNCDMVALTDHDTIDGLAEASYEANKLNLQFVFGT 62

Query: 74 QLD 76
          ++ 
Sbjct: 63 EIS 65


>gi|284048372|ref|YP_003398711.1| PHP domain protein [Acidaminococcus fermentans DSM 20731]
 gi|283952593|gb|ADB47396.1| PHP domain protein [Acidaminococcus fermentans DSM 20731]
          Length = 277

 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 12/92 (13%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA------GI 67
          L +H+++S  +G  +   I+ +  A    AIAITD +N    ++   +A          +
Sbjct: 5  LHIHTTFS--DGIYTPEKIVAQARASGITAIAITDHDN----IQAYNRAARTIHFRHLDL 58

Query: 68 QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
          + I G ++D D +                P +
Sbjct: 59 ELIRGVEIDTDYKGKDVHVLGYHFDPDNQPLL 90


>gi|260589536|ref|ZP_05855449.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Blautia
          hansenii DSM 20583]
 gi|260540104|gb|EEX20673.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Blautia
          hansenii DSM 20583]
          Length = 278

 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 2/87 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          ++ L VHS  ++ +G  + + ++         A A+TD +      E  + A  + ++ I
Sbjct: 4  YIDLHVHS--TVSDGTFTPSELVHYAIEKNLSAFALTDHDTTDGLEEAFKAAYGSNLEII 61

Query: 71 IGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G +L                 +    
Sbjct: 62 PGIELSTTWNSTDVHIVGLDIDWKNTY 88


>gi|288573199|ref|ZP_06391556.1| PHP domain protein [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568940|gb|EFC90497.1| PHP domain protein [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 275

 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HSS S  +G +  + +           +++TD + +     F+++    G++ + G 
Sbjct: 6  LHTHSSCS--DGTVPPDKLAKLAHRSGISVVSLTDHDTVDGVPVFTRECRRLGVKSLSGV 63

Query: 74 QLD 76
          +L 
Sbjct: 64 ELS 66


>gi|82703431|ref|YP_412997.1| PHP-like [Nitrosospira multiformis ATCC 25196]
 gi|82411496|gb|ABB75605.1| PHP-like protein [Nitrosospira multiformis ATCC 25196]
          Length = 279

 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 3/87 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G L+   +++  AA     +A+TD +++    E  + A   G+  I G 
Sbjct: 6   LHCHS--TVSDGLLTPTQLVEHAAARGVEVLALTDHDDIGGLEEARKAADKNGVLFIDGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           ++ +  +    +   G    P  P +V
Sbjct: 64  EISVSWR-GQTVHIVGLGIDPADPQLV 89


>gi|193213346|ref|YP_001999299.1| PHP domain-containing protein [Chlorobaculum parvum NCIB 8327]
 gi|193086823|gb|ACF12099.1| PHP domain protein [Chlorobaculum parvum NCIB 8327]
          Length = 288

 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G  +   I+ K       AI+ITD + +    +    A   G++ I G 
Sbjct: 18 LHIHTKCS--DGLFTPEEIVRKAVHGGLKAISITDHDTVAGIDKAKPLALELGLELIPGV 75

Query: 74 QLD 76
          ++ 
Sbjct: 76 EMS 78


>gi|95931125|ref|ZP_01313850.1| PHP-like [Desulfuromonas acetoxidans DSM 684]
 gi|95132815|gb|EAT14489.1| PHP-like [Desulfuromonas acetoxidans DSM 684]
          Length = 288

 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S  +GA +   +++K A +   A+A+ D +N+       Q     GI  I G 
Sbjct: 7   LHTHSCCS--DGAFTPQQLIEKAAQNHVVAMALCDHDNIDGVEPARQAGHQRGIDVISGV 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           +L    ++   +   G    P  P ++
Sbjct: 65  ELSCVWKEFEDIHLLGYGFDPRHPRLI 91


>gi|303239051|ref|ZP_07325581.1| PHP domain protein [Acetivibrio cellulolyticus CD2]
 gi|302593389|gb|EFL63107.1| PHP domain protein [Acetivibrio cellulolyticus CD2]
          Length = 278

 Score = 59.4 bits (142), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G++S   ++         A+A+TD + +    E   +    GI+ I G 
Sbjct: 7  LHTHSTAS--DGSVSPRELVRHAKESGLAAVALTDHDTIDGIEEALDEGNRIGIEVIAGV 64

Query: 74 QLDIDMQ 80
          +  +D  
Sbjct: 65 ETSVDFN 71


>gi|192359793|ref|YP_001982271.1| PHP domain-containing protein [Cellvibrio japonicus Ueda107]
 gi|190685958|gb|ACE83636.1| PHP domain protein [Cellvibrio japonicus Ueda107]
          Length = 304

 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 12 VH-LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          +H L  H+ YS  +G LS   +  +  A Q   +A+TD + +         A   GI  +
Sbjct: 28 IHDLHSHTHYS--DGRLSPAELFARAKARQVGVLAVTDHDTIAGLQSAQAAALEQGIGFV 85

Query: 71 IGCQLDIDMQ 80
           G +      
Sbjct: 86 AGIEFSCRWG 95


>gi|302865202|ref|YP_003833839.1| PHP domain-containing protein [Micromonospora aurantiaca ATCC
          27029]
 gi|302568061|gb|ADL44263.1| PHP domain protein [Micromonospora aurantiaca ATCC 27029]
          Length = 288

 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS-ALEFSQKACAAGIQPIIG 72
          L  HS+ S  +G L+   ++   A      +A+TD +     A   +  A   G+  I G
Sbjct: 9  LHTHSTAS--DGTLTPAELVRAAAEAGLDVVALTDHDTTAGWAP--AVAALPPGLTLIRG 64

Query: 73 CQL---DIDMQDNLKMTNQGKTPFPTVPSI 99
           ++       +  + +        P  P +
Sbjct: 65 AEISCRWFGAEPAIPLHLLAYLFDPAEPHL 94


>gi|193214679|ref|YP_001995878.1| PHP domain-containing protein [Chloroherpeton thalassium ATCC
          35110]
 gi|193088156|gb|ACF13431.1| PHP domain protein [Chloroherpeton thalassium ATCC 35110]
          Length = 284

 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 10/72 (13%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ----KACAAGIQP 69
          L +H++ S  +G LS   I++K       AI++TD +     ++  +     A A GI+ 
Sbjct: 16 LHIHTTCS--DGVLSPKEIVEKAKQAGLKAISLTDHDT----IKAIEPALPIAAAHGIEL 69

Query: 70 IIGCQLDIDMQD 81
          + G ++    ++
Sbjct: 70 VPGVEMSATHEE 81


>gi|226952862|ref|ZP_03823326.1| metal-dependent phosphoesterase [Acinetobacter sp. ATCC 27244]
 gi|226836373|gb|EEH68756.1| metal-dependent phosphoesterase [Acinetobacter sp. ATCC 27244]
          Length = 291

 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 17/95 (17%)

Query: 14  LQVHSSYSLL--EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGI 67
           L  H+    L  +G  S   ++      +   +A+TD + +       +     A    I
Sbjct: 6   LHTHT----LISDGTYSPEQLVQAAVDLKIHTLALTDHDTMDGLTRAQRYLDEHAQDYDI 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           + I G ++           ++  T       IV L
Sbjct: 62  RLISGVEVS-------SQWSRPNTKKSYGVHIVAL 89


>gi|307352725|ref|YP_003893776.1| PHP domain-containing protein [Methanoplanus petrolearius DSM
          11571]
 gi|307155958|gb|ADN35338.1| PHP domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 222

 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH+ YS  +G  S+ +I+          IAITD + +  A     +     I  I G 
Sbjct: 6  LHVHTKYS-RDGESSVEDIIRMAEKRGLDVIAITDHDTVGGAK--YAQTIKTDIMVIPGV 62

Query: 74 QLD 76
          ++ 
Sbjct: 63 EIS 65


>gi|220933066|ref|YP_002509974.1| PHP domain protein [Halothermothrix orenii H 168]
 gi|219994376|gb|ACL70979.1| PHP domain protein [Halothermothrix orenii H 168]
          Length = 281

 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+YS  +G+ +   ++   A      IA+ D + +    E  +     GI+ I   
Sbjct: 5  LHIHSTYS--DGSYTPAELVSYAAKKGLKTIAVADHDTVEGVAEALKYGRERGIEVIPAI 62

Query: 74 QLD 76
          +  
Sbjct: 63 EFS 65


>gi|310829478|ref|YP_003961835.1| hypothetical protein ELI_3928 [Eubacterium limosum KIST612]
 gi|308741212|gb|ADO38872.1| hypothetical protein ELI_3928 [Eubacterium limosum KIST612]
          Length = 312

 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 28/142 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL-------FS-ALEFSQKACAA 65
           L  H++ S  +G  +    LD  AA     +AITD + L           ++  + A   
Sbjct: 11  LHSHTTRS--DGNDTPKEFLDTAAALGMKVVAITDHDVLPPEKIEVGGLMVDVERYAQKK 68

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE-------GYQRLIELVSR 118
           G++ + G +   + +            + +     +L             Y+RL EL++ 
Sbjct: 69  GMKVLKGIEFSCETEVEDVHLVAFGCDYSSPE---ILAMNRIIVQSKIDSYRRLTELLTE 125

Query: 119 MYLLDQGKQSVRICLSWLQEIG 140
                  K    I    +    
Sbjct: 126 -------KGFP-ISWEEVLNYN 139


>gi|225389528|ref|ZP_03759252.1| hypothetical protein CLOSTASPAR_03276 [Clostridium asparagiforme
          DSM 15981]
 gi|225044413|gb|EEG54659.1| hypothetical protein CLOSTASPAR_03276 [Clostridium asparagiforme
          DSM 15981]
          Length = 282

 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          FV L VHS+ S  +G+     ++         AIA+TD + +         A AAGI+ I
Sbjct: 3  FVDLHVHSTAS--DGSCPPEAVISLAVQAGLDAIALTDHDTVDGIPAAQDAADAAGIRLI 60

Query: 71 IGCQLD 76
           G ++ 
Sbjct: 61 PGIEVS 66


>gi|315651456|ref|ZP_07904479.1| PHP domain protein [Eubacterium saburreum DSM 3986]
 gi|315486276|gb|EFU76635.1| PHP domain protein [Eubacterium saburreum DSM 3986]
          Length = 288

 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 44/148 (29%), Gaps = 37/148 (25%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP- 69
           ++ L  HS+ S  +G+ S + +     +    AIA+TD + +       ++    G+Q  
Sbjct: 3   YIDLHTHSTAS--DGSFSPSKVAMLAKSADMKAIALTDHDTMAGV----EECFKMGLQLD 56

Query: 70  ---IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD--- 123
              I G ++                P                          +++ D   
Sbjct: 57  LPVIAGVEMSCVYNSKEIHILGYLLPDNFP------AKN-------------LHIKDEVL 97

Query: 124 ---QGKQSVRICL--SWLQEIGTEGLIM 146
              +     R       +     +G+I+
Sbjct: 98  ADLEFFARERADRNAEIINRFKKDGIII 125


>gi|269836736|ref|YP_003318964.1| PHP domain-containing protein [Sphaerobacter thermophilus DSM
          20745]
 gi|269785999|gb|ACZ38142.1| PHP domain protein [Sphaerobacter thermophilus DSM 20745]
          Length = 283

 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H++ S  +G +S   +++  +      +A+TD ++     E        G+  I G 
Sbjct: 13 LHTHTTAS--DGVISPAELVELASQRGLRVLAVTDHDSTDGIDEAIAAGQRLGVTVIPGI 70

Query: 74 QL 75
          +L
Sbjct: 71 EL 72


>gi|57234471|ref|YP_181454.1| phosphotransferase domain-containing protein [Dehalococcoides
           ethenogenes 195]
 gi|57224919|gb|AAW39976.1| PHP domain protein [Dehalococcoides ethenogenes 195]
          Length = 219

 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 31/170 (18%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L VH++YS+ +      +++ +        I++ D      AL     A  + I+ I+  
Sbjct: 6   LHVHTNYSM-DSNTKPEDLIKRCLEKGINCISVCDHGTAEGAL---MLAKNSPIKIIV-S 60

Query: 74  QLDIDMQDNL------KMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           +  +     +      +    G +    V  I      A+G      LV   +  D+ + 
Sbjct: 61  EEVLTPHGEIMGMFLKESIPSGISVDECVSRI----K-AQG-----ALVCIPHPYDKLRG 110

Query: 128 SVRICLSWLQEIGTEGLI-MLTGGSSGPID--RAFFFNSSQVAEKRLLTF 174
           S  I  S L+ + +EG I +L       +   R     S + A K    +
Sbjct: 111 SALID-SELERLASEGKIDVL------EVFNSRTLLNGSLKKARKLAKQY 153


>gi|289610137|emb|CBI60314.1| unnamed protein product [Sordaria macrospora]
          Length = 195

 Score = 59.0 bits (141), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 30/160 (18%)

Query: 409 NPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP 468
           N  R   PD D+DF  +RR+EVI+Y+  +YG ER     T    + ++A+ +VG+ L + 
Sbjct: 62  NSIRGEPPDIDVDFEHERREEVIQYIYARYGRERAGIAATVIHYRPRSAVGEVGKVLGLT 121

Query: 469 YSQVDRLCKLIP----NDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRH 524
                RL   +      D    +    I +  R                          H
Sbjct: 122 RDVTQRLGSTVWAVSPADGGAALYQCRILEFPR--------------------------H 155

Query: 525 ASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIE 564
            S H  G V+    L +LVP++          +++   I+
Sbjct: 156 LSQHVGGFVLTQGRLDELVPIHNGAMEGRTFIEWDKDDID 195


>gi|294669715|ref|ZP_06734781.1| hypothetical protein NEIELOOT_01615 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308281|gb|EFE49524.1| hypothetical protein NEIELOOT_01615 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 197

 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +GAL+   ++    A+    +A+TD ++     E   +A   GI+ I G 
Sbjct: 4   LHCHS--TVSDGALAPAEVVRLARANGCTLLALTDHDHTGGLAEARAEAETLGIRFINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                P   LL    +G  +RL
Sbjct: 62  EISVTWRKRTIHIVGLDFDEHHAPLQNLLAEVRKGRLKRL 101


>gi|330893149|gb|EGH25810.1| type II secretion system, protein F domain [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 179

 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/87 (45%), Positives = 59/87 (67%), Gaps = 1/87 (1%)

Query: 352 KFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPD 411
             +GYFL V D +++A+  +I    GRGS A S   YAL IT+++P + +LLFERF++ +
Sbjct: 94  GMAGYFLTVHDIVEFARSQHIL-CQGRGSAANSAVCYALGITELNPEKSNLLFERFISKE 152

Query: 412 RMSMPDFDIDFCQDRRDEVIRYVQNKY 438
           R   PD D+DF  DRR+EVI+Y+  +Y
Sbjct: 153 RNEPPDIDVDFEHDRREEVIQYIFRRY 179


>gi|313200704|ref|YP_004039362.1| php domain-containing protein [Methylovorus sp. MP688]
 gi|312440020|gb|ADQ84126.1| PHP domain protein [Methylovorus sp. MP688]
          Length = 298

 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 2/95 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G L+   ++   AA     +A+TD +++    E  Q A   G+Q + G 
Sbjct: 14  LHSHS--TVSDGTLTPAELVRHAAAQGVRLLALTDHDDVAGLEEARQVADEHGMQFVSGV 71

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           ++ +  +         +      P +  L     G
Sbjct: 72  EISVTWKRRTLHIVGLRIDPAYQPLVDGLARIRAG 106


>gi|11498832|ref|NP_070061.1| hypothetical protein AF1233 [Archaeoglobus fulgidus DSM 4304]
 gi|2649349|gb|AAB90011.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 211

 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L +HS+YS  +G  S+  I  +       AIAI D 
Sbjct: 4  LHIHSNYS--DGQGSVEEIARRAKERGLKAIAIVDH 37


>gi|296108982|ref|YP_003615931.1| PHP domain protein [Methanocaldococcus infernus ME]
 gi|295433796|gb|ADG12967.1| PHP domain protein [Methanocaldococcus infernus ME]
          Length = 294

 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 9/90 (10%)

Query: 14 LQVHSSYS---------LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          L +HS YS          L+      +I+          IAITD N +   LE  +    
Sbjct: 7  LHIHSKYSGIGRLGKLRFLDSIEEPRDIVKTAKKKGLDVIAITDHNTIRGGLEGKKYEKE 66

Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFP 94
            I+ ++G ++     + + +    + P  
Sbjct: 67 FDIEVVVGSEILTKDGEIIGLFLNEEIPKG 96


>gi|294649265|ref|ZP_06726700.1| PHP family metal-dependent phosphoesterase [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292824818|gb|EFF83586.1| PHP family metal-dependent phosphoesterase [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 291

 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 17/95 (17%)

Query: 14  LQVHSSYSLL--EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGI 67
           L  H+    L  +G  S   ++      +   +A+TD + +       +     A    I
Sbjct: 6   LHTHT----LISDGTYSPEQLVQAAVDLKIHTLAVTDHDTMDGLTRAQRYLDEHAQDHDI 61

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           + I G ++           ++  T       IV L
Sbjct: 62  RLISGVEVS-------SQWSRPNTKKSYGVHIVAL 89


>gi|325981007|ref|YP_004293409.1| PHP domain-containing protein [Nitrosomonas sp. AL212]
 gi|325530526|gb|ADZ25247.1| PHP domain protein [Nitrosomonas sp. AL212]
          Length = 290

 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+  + +G L    ++++ A      +A+TD +++    E  Q A A  I  I G 
Sbjct: 6   LHCHSN--ISDGVLPPAQLVERAAMRGVEILALTDHDDISGLAEARQMAEAKSITFINGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           ++ +  +        G    P    ++
Sbjct: 64  EISVSWRGRTLHI-IGLDIDPAYAPLI 89


>gi|167947394|ref|ZP_02534468.1| hypothetical protein Epers_12972 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 120

 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 54/101 (53%), Positives = 72/101 (71%)

Query: 712 VLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAV 771
           +LRRAMGKK  EEM KQ+  F  GA  NGI   +A+ IF+L+ KFA YGFNKSH+AAYA+
Sbjct: 1   MLRRAMGKKKPEEMAKQRAVFKEGAENNGIDAELAMKIFDLVEKFAGYGFNKSHSAAYAL 60

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
           +SYQT W+K HYP  F+AA  + +MDN +K+     ++R+ 
Sbjct: 61  VSYQTMWLKAHYPAAFMAAVCSADMDNTDKVVPLIDESRRM 101


>gi|253998630|ref|YP_003050693.1| PHP domain-containing protein [Methylovorus sp. SIP3-4]
 gi|253985309|gb|ACT50166.1| PHP domain protein [Methylovorus sp. SIP3-4]
          Length = 298

 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 2/95 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G L+   ++   AA     +A+TD +++    E  Q A   G+Q + G 
Sbjct: 14  LHSHS--TVSDGTLTPAELVRHAAAQGVRLLALTDHDDVAGLEEARQVADEHGMQFVSGV 71

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           ++ +  +         +      P +  L     G
Sbjct: 72  EISVTWKRRTLHIVGLRIDPTYQPLVDGLARIRAG 106


>gi|254168238|ref|ZP_04875084.1| hypothetical protein ABOONEI_2764 [Aciduliprofundum boonei T469]
 gi|197622747|gb|EDY35316.1| hypothetical protein ABOONEI_2764 [Aciduliprofundum boonei T469]
          Length = 216

 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII-GC 73
            HS+YS  +G + + ++L +       AIAITD N +   L+    A   GI  +I G 
Sbjct: 6  HTHSAYSP-DGKVPIKDMLKRAKKIGLGAIAITDHNEIKGTLK----AKKLGILEVIRGI 60

Query: 74 QLDIDMQD 81
          ++      
Sbjct: 61 EVSTADGH 68


>gi|294339975|emb|CAZ88338.1| putative Phosphoesterase PHP family [Thiomonas sp. 3As]
          Length = 283

 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 1  LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          ++    ++P    L  HS  ++ +G L+   +  +  A+     A+TD + L    E  Q
Sbjct: 1  MSASFARNPD---LHCHS--TVSDGTLTPAALAQRAHANGVDLWALTDHDELGGLTEARQ 55

Query: 61 KACAAGIQPIIGCQLDIDM 79
           A + G++ + G ++ +  
Sbjct: 56 SAESLGLRFVTGVEISVSF 74


>gi|325263475|ref|ZP_08130209.1| phosphoesterase [Clostridium sp. D5]
 gi|324031184|gb|EGB92465.1| phosphoesterase [Clostridium sp. D5]
          Length = 299

 Score = 58.6 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN--LFSALEFSQKACAAGIQPII 71
          L +HS +S  +G  S++ + +K A     AI I D +        E  +++   GIQ + 
Sbjct: 3  LHIHSGHS-SDGTYSVHELFEKAAEYGMEAIIIADHDTWEAAG--EAQKESKDLGIQTLP 59

Query: 72 GCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
            +L    +  +              ++
Sbjct: 60 ALELSCIDEGRMVHLLGYGIDISGGHTL 87


>gi|167855669|ref|ZP_02478426.1| TrpH-like protein [Haemophilus parasuis 29755]
 gi|167853187|gb|EDS24444.1| TrpH-like protein [Haemophilus parasuis 29755]
          Length = 273

 Score = 58.6 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 2/90 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L+   ++ +        +A+TD + +    E    A    +  I G 
Sbjct: 5   LHSHSTAS--DGVLTPTELVKRAVEQNVTMLALTDHDTVAGITEAKMFAQNQPLTFISGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           ++ +  +                  + LL 
Sbjct: 63  EISVLWEGKSLHLTALNIDETHPAIVNLLA 92


>gi|332039132|gb|EGI75554.1| PHP domain-containing protein [Hylemonella gracilis ATCC 19624]
          Length = 285

 Score = 58.6 bits (140), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 37/127 (29%), Gaps = 18/127 (14%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S  +G L+   +  +         A+TD + +         A + G+  + G 
Sbjct: 9   LHCHSVAS--DGTLTPEALAQRAKLAGVELWALTDHDEVSGQQRAMAAARSQGLPYLTGV 66

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++ I                       LLV   EG ++               +  R   
Sbjct: 67  EISITFAGQTVHIVGLGFDAAD----TLLV---EGLRQ---------TRGGRGERAREMS 110

Query: 134 SWLQEIG 140
             L + G
Sbjct: 111 EQLAQAG 117


>gi|289677278|ref|ZP_06498168.1| phosphoesterase PHP, N-terminal:PHP, C-terminal [Pseudomonas
          syringae pv. syringae FF5]
 gi|330897266|gb|EGH28685.1| phosphoesterase PHP [Pseudomonas syringae pv. japonica str.
          M301072PT]
          Length = 287

 Score = 58.3 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +GALS   ++ +   +    +++TD + L    E    A + G+Q + G 
Sbjct: 5  LHCHSTAS--DGALSPTALVTRAHENGVRVLSLTDHDTLEGLEEARAAAHSLGMQLVNGV 62

Query: 74 QLDIDMQD 81
          +L      
Sbjct: 63 ELSCTWGG 70


>gi|209694704|ref|YP_002262632.1| hypothetical protein VSAL_I1155 [Aliivibrio salmonicida LFI1238]
 gi|208008655|emb|CAQ78840.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
          Length = 281

 Score = 58.3 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H++ S  +G LS   ++++         AITD + +    E  +        +  I 
Sbjct: 5   LHSHTTAS--DGRLSPTELVERAVNFDVKVFAITDHDTVAGLAEAHKAIKEKDLPLHLID 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           G ++   +  N  +   G       P ++ L
Sbjct: 63  GIEIS-TLWSNKDIHVVGLNLDINHPELLAL 92


>gi|317492215|ref|ZP_07950644.1| PHP domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919554|gb|EFV40884.1| PHP domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 294

 Score = 58.3 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 6/93 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC---AAGIQPI 70
           L  H++ S  +G LS   ++ +        +AITD +        +++A       ++ I
Sbjct: 24  LHSHTTAS--DGLLSPAELVARAVEMGVTTLAITDHDTTVGLP-AARQAIIDLELELELI 80

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
            G ++    +++                  LL 
Sbjct: 81  AGVEISTLWENHEIHIVGLNVDITDPALQTLLA 113


>gi|330980372|gb|EGH78485.1| phosphoesterase PHP [Pseudomonas syringae pv. aptata str. DSM
          50252]
          Length = 286

 Score = 58.3 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +GALS   ++ +   +    +++TD + L    E    A + G+Q + G 
Sbjct: 5  LHCHSTAS--DGALSPTALVTRAHENGVRVLSLTDHDTLEGLEEARAAAHSLGMQLVNGV 62

Query: 74 QLDIDMQD 81
          +L      
Sbjct: 63 ELSCTWGG 70


>gi|309810407|ref|ZP_07704241.1| PHP domain protein [Dermacoccus sp. Ellin185]
 gi|308435647|gb|EFP59445.1| PHP domain protein [Dermacoccus sp. Ellin185]
          Length = 282

 Score = 58.3 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  S  +++ + +      +A+TD +      + +  A   GI  + G 
Sbjct: 5  LHTHSNRS--DGTTSPADVVAEASEAGLDVVALTDHDTTRGWDDAADAARRVGIDVVRGI 62

Query: 74 QLD 76
          ++ 
Sbjct: 63 EIS 65


>gi|302874551|ref|YP_003843184.1| PHP domain-containing protein [Clostridium cellulovorans 743B]
 gi|307690838|ref|ZP_07633284.1| PHP domain-containing protein [Clostridium cellulovorans 743B]
 gi|302577408|gb|ADL51420.1| PHP domain protein [Clostridium cellulovorans 743B]
          Length = 275

 Score = 58.3 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
           +HS+ S  +G LS   I+     +    IA+TD +N     E         I+ I G +
Sbjct: 7  HIHSTAS--DGTLSPTEIVTLAKNNGVDVIALTDHDNTKGVEEAILAGLTHNIKVIPGVE 64

Query: 75 LD 76
          L 
Sbjct: 65 LS 66


>gi|77457714|ref|YP_347219.1| PHP-like [Pseudomonas fluorescens Pf0-1]
 gi|77381717|gb|ABA73230.1| coserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 287

 Score = 58.3 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 2/90 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +GAL+   ++ +   +    +++TD + L    E    A A G+Q + G 
Sbjct: 5   LHCHSTAS--DGALAPAALVARAFENGVRVLSLTDHDTLEGLAEARTAAEALGMQLVNGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           +L                     P +  + 
Sbjct: 63  ELSCTWGGATIHVLGYGFDVNAAPLVEAIA 92


>gi|325131472|gb|EGC54179.1| PHP domain protein [Neisseria meningitidis M6190]
 gi|325137579|gb|EGC60160.1| PHP domain protein [Neisseria meningitidis ES14902]
          Length = 278

 Score = 58.3 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S  +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHSIVS--DGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQGRLKRL 101


>gi|268608563|ref|ZP_06142290.1| putative phophoesterase [Ruminococcus flavefaciens FD-1]
          Length = 278

 Score = 58.3 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+   L +G+L + +++++ A      ++ITD + + S       A  AGI+ + G 
Sbjct: 5  LHCHTK--LSDGSLGIEDVIEQAARTGIDWLSITDHDTMASFSRADVLAERAGIKVLHGV 62

Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSI 99
          +L    ++     +           +
Sbjct: 63 ELSAWDKERNSKVHILCYAPSKPNRL 88


>gi|113969805|ref|YP_733598.1| phosphotransferase domain-containing protein [Shewanella sp. MR-4]
 gi|113884489|gb|ABI38541.1| PHP C-terminal domain protein [Shewanella sp. MR-4]
          Length = 286

 Score = 58.3 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 4/92 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
           L  H++ S  +G LS + ++ +         AITD + +          +A A  ++ I 
Sbjct: 10  LHSHTTAS--DGHLSPSELVARALEKGVQLFAITDHDTVAGLSEARAFNQAQAEPLKLIS 67

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           G ++                       +  L 
Sbjct: 68  GVEISTRWNSYDIHIVALNFDETHAELLRFLA 99


>gi|330503929|ref|YP_004380798.1| phosphotransferase domain-containing protein [Pseudomonas
          mendocina NK-01]
 gi|328918215|gb|AEB59046.1| phosphotransferase domain-containing protein [Pseudomonas
          mendocina NK-01]
          Length = 303

 Score = 58.3 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +GALS   ++ +        +A+TD + L    E  + A A  ++ + G 
Sbjct: 20 LHCHSTAS--DGALSPAVLVARAHERGVRLLALTDHDTLEGLDEARRAATALDMKLVNGI 77

Query: 74 QLDIDMQD 81
          +L      
Sbjct: 78 ELSCTWGG 85


>gi|37522485|ref|NP_925862.1| hypothetical protein gll2916 [Gloeobacter violaceus PCC 7421]
 gi|35213486|dbj|BAC90857.1| gll2916 [Gloeobacter violaceus PCC 7421]
          Length = 263

 Score = 58.3 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          V L  H+ +S  +G  S   ++ +  A     +AITD N++  
Sbjct: 3  VGLHNHTCFS--DGRYSPAALVAQAEALGYERLAITDHNSVAG 43


>gi|260220461|emb|CBA28021.1| Protein trpH [Curvibacter putative symbiont of Hydra
          magnipapillata]
          Length = 284

 Score = 58.3 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  S  +G L+   + ++  ++     A+TD + +         A A G++ + G 
Sbjct: 9  LHCHSVVS--DGTLTPEALAERAKSNGVELWALTDHDEIGGLQRARDAAHAQGMRYLTGV 66

Query: 74 QLDIDM 79
          ++ +  
Sbjct: 67 EISVTF 72


>gi|330811306|ref|YP_004355768.1| hypothetical protein PSEBR_c2g91 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379414|gb|AEA70764.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 287

 Score = 58.3 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 2/95 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +GAL+   ++ +        +A+TD + L    E    A A G+Q + G 
Sbjct: 5   LHCHSTAS--DGALAPAVLVARAFEHGVRVLALTDHDTLEGLDEARSAATALGMQLVNGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           +L                       +  +    +G
Sbjct: 63  ELSCTWGGATIHVLGYGFDVNAPALVQAIAQLRDG 97


>gi|308050244|ref|YP_003913810.1| PHP domain protein [Ferrimonas balearica DSM 9799]
 gi|307632434|gb|ADN76736.1| PHP domain protein [Ferrimonas balearica DSM 9799]
          Length = 275

 Score = 58.3 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H++ S  +G L+   ++ + A  Q   +AITD + +    + +  A   G++ I G 
Sbjct: 5   LHCHTTAS--DGTLTPTELVTRAALQQVTILAITDHDTVAGLDQAADAAAQKGVRLISGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++        ++   G    P  P++V L
Sbjct: 63  EIS-TRWHGFEIHIVGLNFDPQHPAMVAL 90


>gi|257466589|ref|ZP_05630900.1| metal-dependent phosphoesterase [Fusobacterium gonidiaformans
          ATCC 25563]
 gi|315917744|ref|ZP_07913984.1| metal-dependent phosphoesterase [Fusobacterium gonidiaformans
          ATCC 25563]
 gi|313691619|gb|EFS28454.1| metal-dependent phosphoesterase [Fusobacterium gonidiaformans
          ATCC 25563]
          Length = 272

 Score = 58.3 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+ S  +G+ S   I+      +  AIA+TD + +    E  Q+A   GI+ + G 
Sbjct: 5  LHLHSTAS--DGSFSPKQIVQLALLKKMKAIALTDHDTIDGLYEAKQEAEKWGIEFVSGI 62

Query: 74 QLD 76
          +  
Sbjct: 63 EFS 65


>gi|224371667|ref|YP_002605831.1| putative metal-dependent phosphoesterase [Desulfobacterium
          autotrophicum HRM2]
 gi|223694384|gb|ACN17667.1| putative metal-dependent phosphoesterase [Desulfobacterium
          autotrophicum HRM2]
          Length = 307

 Score = 58.3 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 29/82 (35%), Gaps = 12/82 (14%)

Query: 7  KSPSFVHLQVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          K P +  L  H+      YS         +++         A+ +TD + + +  E    
Sbjct: 2  KGPFYADLHNHTTASDGDYS-------PQDLVAAAKKAGLSALGVTDHDTIDAVGEAIVA 54

Query: 62 ACAAGIQPIIGCQLDIDMQDNL 83
              G++ + G ++ +  +   
Sbjct: 55 GDRHGLEVVPGVEISVRFKRPF 76


>gi|194337269|ref|YP_002019063.1| PHP domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309746|gb|ACF44446.1| PHP domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 286

 Score = 58.3 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G  +   I++K A     AI+ITD +++    +    A   GI+ I G 
Sbjct: 18 LHIHTKCS--DGIFTPAEIVEKAALVGLKAISITDHDSVLGIDKAKPLASEKGIELIPGV 75

Query: 74 QLD 76
          ++ 
Sbjct: 76 EMS 78


>gi|313888330|ref|ZP_07822001.1| nucleic acid-binding domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845733|gb|EFR33123.1| nucleic acid-binding domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 407

 Score = 58.3 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 31/69 (44%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
             L++HS  S + G  S  +  ++       +I I+DTN++    E  + A   G++ + 
Sbjct: 318 TELRIHSKMSQMSGVTSFTDFANRAKLWGHDSIGISDTNDVQGFPEAMEAAEKTGLKILY 377

Query: 72  GCQLDIDMQ 80
           G  ++    
Sbjct: 378 GTDINFVDD 386


>gi|292669737|ref|ZP_06603163.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Selenomonas noxia ATCC 43541]
 gi|292648534|gb|EFF66506.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Selenomonas noxia ATCC 43541]
          Length = 276

 Score = 58.3 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---IQPI 70
          L +H+++S  +G  +   I++   A     IAITD +++    E  +     G   ++ I
Sbjct: 5  LHIHTTFS--DGRDTPEEIVEAAKAAGLRYIAITDHDSVEGVTELYESGR-YGSGSLRII 61

Query: 71 IGCQLDIDMQDN 82
           G    +     
Sbjct: 62 PGVGFSVSDAQR 73


>gi|121634259|ref|YP_974504.1| hypothetical protein NMC0394 [Neisseria meningitidis FAM18]
 gi|120865965|emb|CAM09702.1| hypothetical protein NMC0394 [Neisseria meningitidis FAM18]
          Length = 278

 Score = 58.3 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S  +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHSIVS--DGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQGRLKRL 101


>gi|108758872|ref|YP_630956.1| hypothetical protein MXAN_2739 [Myxococcus xanthus DK 1622]
 gi|108462752|gb|ABF87937.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
          Length = 272

 Score = 58.3 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H++ S  +G  +   +L + AA     +AITD + +    E    A A G++ + G 
Sbjct: 4  LHSHTTAS--DGQYAPTELLARAAAAGVTVLAITDHDTVAGLAEAEVAARAHGVELVPGI 61

Query: 74 QLD 76
          ++ 
Sbjct: 62 EIS 64


>gi|169837691|ref|ZP_02870879.1| hypothetical protein cdivTM_11437 [candidate division TM7
          single-cell isolate TM7a]
          Length = 48

 Score = 58.3 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 22/34 (64%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAA 38
          + K+  +VHL  H+ +SLL+G   + ++++++  
Sbjct: 15 MLKASDYVHLHNHTHHSLLDGLTKIPDLVNRVKE 48


>gi|315634273|ref|ZP_07889560.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Aggregatibacter segnis ATCC 33393]
 gi|315476863|gb|EFU67608.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Aggregatibacter segnis ATCC 33393]
          Length = 278

 Score = 58.3 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G L+   ++ +        +A+TD + +    E  Q+A +  ++ I G 
Sbjct: 6  LHCHSTAS--DGILTPTEVVLRAHEKGVNVLALTDHDTVAGVAEARQQAESLRMRLINGV 63

Query: 74 QLDIDMQDN 82
          ++    ++ 
Sbjct: 64 EISTLWENR 72


>gi|302392224|ref|YP_003828044.1| PHP domain protein [Acetohalobium arabaticum DSM 5501]
 gi|302204301|gb|ADL12979.1| PHP domain protein [Acetohalobium arabaticum DSM 5501]
          Length = 288

 Score = 58.3 bits (139), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H++ S  +G+ + + +++K        IAITD + +    E   +A    ++ I G 
Sbjct: 5  LHLHTTAS--DGSFTPSEVVNKAVQLGLDVIAITDHDTVGGIPEAKAEAFDKDLEVISGI 62

Query: 74 QLD 76
          +L+
Sbjct: 63 ELN 65


>gi|331269029|ref|YP_004395521.1| putative metal-dependent phosphoesterase [Clostridium botulinum
          BKT015925]
 gi|329125579|gb|AEB75524.1| Predicted metal-dependent phosphoesterase (PHP family)
          [Clostridium botulinum BKT015925]
          Length = 277

 Score = 57.9 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          + K   F HL      +  +G LS   ++     D    I+ITD +N F   E       
Sbjct: 1  MYKKGDF-HLHT----TASDGKLSPTELVTLAKNDGFDIISITDHDNTFGLEEAIVSGTK 55

Query: 65 AGIQPIIGCQLD 76
           GI+ I G +L 
Sbjct: 56 LGIKIIPGIELS 67


>gi|261405787|ref|YP_003242028.1| PHP domain-containing protein [Paenibacillus sp. Y412MC10]
 gi|261282250|gb|ACX64221.1| PHP domain protein [Paenibacillus sp. Y412MC10]
          Length = 288

 Score = 57.9 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 54/174 (31%), Gaps = 23/174 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+  S  +G  + +  +         A+AITD + +    E  Q      I  + G 
Sbjct: 12  LHSHTQAS--DGMNTPSENVQLAYERGLGALAITDHDTVAGIEEALQAGERLNIIVVPGV 69

Query: 74  QL-DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
           ++  +    ++ +          V               L  L +     ++  + +   
Sbjct: 70  EISTMAGGTDIHVLGYYVDHRDPVF--------------LERLAALRRTREKRNEKILAK 115

Query: 133 LSWL-QEIGTEGLIMLTGGSSGPIDRAFFFNSSQVA---EKRLLTFKKLFGDRL 182
           L  L  E+  E +I + G      D +        A   +   L  +  F DR 
Sbjct: 116 LRELGIELTMEEVIAVLG-RPLEPDESIGRPHIADALVHKGHALDLRDAF-DRY 167


>gi|308069689|ref|YP_003871294.1| Protein trpH [Paenibacillus polymyxa E681]
 gi|305858968|gb|ADM70756.1| Protein trpH [Paenibacillus polymyxa E681]
          Length = 289

 Score = 57.9 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+  S  +G     + +          +AITD + +    E  ++    GI  + G 
Sbjct: 12 LHTHTQAS--DGMQPPADNVRWAKEKGLAGVAITDHDTVAGLEEALEEGKRIGITVVPGV 69

Query: 74 QLD 76
          ++ 
Sbjct: 70 EIS 72


>gi|291514934|emb|CBK64144.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Alistipes shahii WAL 8301]
          Length = 300

 Score = 57.9 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS YS  +G L +  I+   AA    A ++TD N++    E ++ A   GI  + G 
Sbjct: 6  LHIHSGYS-SDGELPVAAIVGLCAARGLDAFSLTDHNSVRGVGEAARLARERGIGFVPGI 64

Query: 74 QLDIDMQD 81
          ++D + + 
Sbjct: 65 EIDCNYRG 72


>gi|296135810|ref|YP_003643052.1| PHP domain protein [Thiomonas intermedia K12]
 gi|295795932|gb|ADG30722.1| PHP domain protein [Thiomonas intermedia K12]
          Length = 283

 Score = 57.9 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 1  LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          +     ++P    L  HS  ++ +G L+   +  +  A+     A+TD + L    E  Q
Sbjct: 1  MFASFARNPD---LHCHS--TVSDGTLTPAALAQRAHANGVDLWALTDHDELGGLTEARQ 55

Query: 61 KACAAGIQPIIGCQLDIDM 79
           A A G++ + G ++ +  
Sbjct: 56 SAEALGLRFVPGVEISVSF 74


>gi|304310658|ref|YP_003810256.1| Predicted metal-dependent phosphoesterase [gamma proteobacterium
          HdN1]
 gi|301796391|emb|CBL44599.1| Predicted metal-dependent phosphoesterase [gamma proteobacterium
          HdN1]
          Length = 303

 Score = 57.9 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            HS+YS  +G+ +   +   +AA      A+TD + +         A A GI+ + G +
Sbjct: 6  HCHSTYS--DGSQTPEWLAQAMAAAGVELFALTDHDTVAGVHRVQIAAQANGIRALAGVE 63

Query: 75 LDIDMQDN 82
          +      +
Sbjct: 64 ISCRWGAH 71


>gi|261364156|ref|ZP_05977039.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           mucosa ATCC 25996]
 gi|288567751|gb|EFC89311.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           mucosa ATCC 25996]
          Length = 278

 Score = 57.9 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   ++     +    +A+TD ++     E   +A   G++ + G 
Sbjct: 4   LHCHS--TVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADKLGLRFVNGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +                       LL    +G  +RL
Sbjct: 62  EISVTWHGRTIHVVGLDFDEQDENLQNLLAQVRQGRLKRL 101


>gi|325141630|gb|EGC64092.1| PHP domain protein [Neisseria meningitidis 961-5945]
 gi|325141662|gb|EGC64123.1| PHP domain protein [Neisseria meningitidis 961-5945]
 gi|325141696|gb|EGC64156.1| PHP domain protein [Neisseria meningitidis 961-5945]
 gi|325197673|gb|ADY93129.1| PHP domain protein [Neisseria meningitidis G2136]
          Length = 278

 Score = 57.9 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S  +G LS   ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHSIVS--DGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQGRLKRL 101


>gi|270308036|ref|YP_003330094.1| PHP domain protein [Dehalococcoides sp. VS]
 gi|270153928|gb|ACZ61766.1| PHP domain protein [Dehalococcoides sp. VS]
          Length = 219

 Score = 57.9 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 60/174 (34%), Gaps = 39/174 (22%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L VH++YS+ +      +++ K        I++ D      AL     A  + I+ I+  
Sbjct: 6   LHVHTNYSM-DSNTKPEDLIKKCVEKGVNCISLCDHGTAEGAL---MLAQNSPIKIIVSE 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM----------YLLD 123
           ++     + + M  +   P                     E VSR+          +  D
Sbjct: 62  EVLTHHGEIMGMFLKESIPSGISVD---------------ECVSRIKAQGALVCIPHPYD 106

Query: 124 QGKQSVRICLSWLQEIGTEGLI-MLTGGSSGPID--RAFFFNSSQVAEKRLLTF 174
           + + S  I  S L+ + +EG I +L       +   R     S + A K    +
Sbjct: 107 KLRGSALID-SELERLASEGKIDVL------EVFNSRTLLNGSLKKARKLAKQY 153


>gi|169840066|ref|ZP_02873254.1| DNA polymerase III subunit alpha [candidate division TM7
           single-cell isolate TM7a]
          Length = 58

 Score = 57.9 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 823 TPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
               +F     +I   L A+ G+G   A +I+       F S+ED   R    KLN+ ++
Sbjct: 2   NQRQNFHNTGWKIRMPLIAMDGLGDAVAENIVSERKKDSFLSIEDLVKRT---KLNKTIV 58


>gi|330815904|ref|YP_004359609.1| hypothetical protein bgla_1g09710 [Burkholderia gladioli BSR3]
 gi|327368297|gb|AEA59653.1| hypothetical protein bgla_1g09710 [Burkholderia gladioli BSR3]
          Length = 111

 Score = 57.9 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L  IKG+G   AR I+E   A  P+    D   RV    +  + +E LV  G
Sbjct: 31  ALRGIKGIGPAKARAIVEEREAHGPYKDTADLARRV--SGIGEKSVERLVAEG 81


>gi|291287365|ref|YP_003504181.1| PHP domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290884525|gb|ADD68225.1| PHP domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 276

 Score = 57.9 bits (138), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 68/214 (31%), Gaps = 46/214 (21%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS++S  +G +    ++          +A+TD + +     F      + ++ + G 
Sbjct: 4   LHTHSTFS--DGTMHPEKLVSYAEKRGVEVLALTDHDTVDGLESFLS--IDSSVKRVTGV 59

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY----QRLIELVSRMYLLDQGKQSV 129
           ++ +                P    +V       G     + +  L +   L D  ++  
Sbjct: 60  EISVVYD-------------PGTFHLV-------GLFVDHKNIALLKTLQKLKDARRRRN 99

Query: 130 RICLSWLQEIGTEGLIM-------LTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
              +  +      GLI        ++    G + R        VA+    +  + F    
Sbjct: 100 DRLMELVS-----GLIGGKVTEDDISPEKDGELGRPHIA-QFLVAQGFAGSMNEAFDK-- 151

Query: 183 YVNL--QRHRGYDRYRESQVVQ-LAYTHELPLVA 213
           Y+      +   DR   S+ +  +     + ++A
Sbjct: 152 YLGKDGSLYLPKDRLEFSEAIDVIHEAGGIAILA 185


>gi|269125471|ref|YP_003298841.1| PHP domain-containing protein [Thermomonospora curvata DSM 43183]
 gi|268310429|gb|ACY96803.1| PHP domain protein [Thermomonospora curvata DSM 43183]
          Length = 280

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G     +++ +        +A+TD + +    E ++ A  AG+  + G 
Sbjct: 5  LHSHSNAS--DGTQPPADVVRRARRAGLDVLALTDHDTVAGLREAAE-ALPAGLTLVPGM 61

Query: 74 QLDIDMQ 80
          +L   + 
Sbjct: 62 ELSCRLG 68


>gi|325847024|ref|ZP_08169850.1| nucleic acid-binding domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480996|gb|EGC84041.1| nucleic acid-binding domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 365

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 34/69 (49%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L++H+  + L+G + ++ +  ++ +    A  ITDT  L +  +   K     I+ + 
Sbjct: 285 VELEIHTKMTNLDGFVDMDELAKRLKSWGHTACGITDTETLQALPDMYDKLGKNDIKMLA 344

Query: 72  GCQLDIDMQ 80
           G +L +  +
Sbjct: 345 GSELLLVDK 353


>gi|302873856|ref|YP_003842489.1| PHP domain-containing protein [Clostridium cellulovorans 743B]
 gi|307689898|ref|ZP_07632344.1| PHP domain-containing protein [Clostridium cellulovorans 743B]
 gi|302576713|gb|ADL50725.1| PHP domain protein [Clostridium cellulovorans 743B]
          Length = 235

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 6/100 (6%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +H++ S  +G L+   ++    +     IAI+D N++    E S+     G+  I   +
Sbjct: 8   HIHTTAS--DGYLNPRQVVMFAKSRGIDTIAISDHNSIDGIYEASEAGKEFGVSVIPAIE 65

Query: 75  LDIDMQDN----LKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
           L     D     L      +        I+ LV   E Y+
Sbjct: 66  LSTRFDDESIHVLGYFKDDRYNSLDFHRILRLVKAREAYK 105


>gi|161869394|ref|YP_001598561.1| hypothetical protein NMCC_0401 [Neisseria meningitidis 053442]
 gi|161594947|gb|ABX72607.1| conserved hypothetical protein [Neisseria meningitidis 053442]
          Length = 278

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   ++     +    +A+TD ++     E   +A    ++ I G 
Sbjct: 4   LHCHS--TVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLDLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQGRLKRL 101


>gi|330817635|ref|YP_004361340.1| PHP-like protein [Burkholderia gladioli BSR3]
 gi|327370028|gb|AEA61384.1| PHP-like protein [Burkholderia gladioli BSR3]
          Length = 276

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +GAL+   +  +  A      A+TD + +   L   + A A G++ + G 
Sbjct: 5   LHCHSNVS--DGALTPAEVAQRAHAAGVTLWALTDHDEVGGQLAAREAAQALGMRYVCGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           ++ +           G    P  P++V
Sbjct: 63  EISVTWASRTVHVV-GLNVDPAAPALV 88


>gi|295099879|emb|CBK88968.1| Predicted metal-dependent phosphoesterases (PHP family)
           [Eubacterium cylindroides T2-87]
          Length = 503

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN----NLFSALEFSQKACAAGIQP 69
           L + S+YS  +G   +  I  +    +   I+ITD N    N  +A  F++     GIQ 
Sbjct: 213 LHIRSNYSD-DGYYDVEEIFKQAKQLKMEVISITDHNCARAN-AAATRFAEL---YGIQY 267

Query: 70  IIGCQLD 76
           I G +LD
Sbjct: 268 IPGVELD 274


>gi|218282553|ref|ZP_03488803.1| hypothetical protein EUBIFOR_01385 [Eubacterium biforme DSM 3989]
 gi|218216540|gb|EEC90078.1| hypothetical protein EUBIFOR_01385 [Eubacterium biforme DSM 3989]
          Length = 297

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS YS  +G  +   +++         IA++D + +    E  +    AGI+ I   
Sbjct: 6  LHMHSCYS-SDGQFTPKELIEIAKEKGLKTIALSDHDCISGVKEMIRLGNEAGIEVIPAI 64

Query: 74 Q 74
          +
Sbjct: 65 E 65


>gi|291008804|ref|ZP_06566777.1| phosphotransferase domain-containing protein [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 290

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 7/96 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-G---IQP 69
           L  HS+ S  +G  + + ++    A     IA+TD +      E  +      G   ++ 
Sbjct: 5   LHTHSTES--DGTDTPSELVATAIAAGLDVIALTDHDTTAGWAEAERAVREHRGPGRLRV 62

Query: 70  IIGCQLDIDMQDNLKMTNQGK-TPFPTVPSIVLLVS 104
           + G +L     D    T       +   P    L  
Sbjct: 63  VPGAELSCACPDGNGRTITVHLLAYLFDPRSTALAE 98


>gi|134097651|ref|YP_001103312.1| phosphotransferase domain-containing protein [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133910274|emb|CAM00387.1| PHP C-terminal domain protein [Saccharopolyspora erythraea NRRL
           2338]
          Length = 292

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 7/96 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-G---IQP 69
           L  HS+ S  +G  + + ++    A     IA+TD +      E  +      G   ++ 
Sbjct: 7   LHTHSTES--DGTDTPSELVATAIAAGLDVIALTDHDTTAGWAEAERAVREHRGPGRLRV 64

Query: 70  IIGCQLDIDMQDNLKMTNQGK-TPFPTVPSIVLLVS 104
           + G +L     D    T       +   P    L  
Sbjct: 65  VPGAELSCACPDGNGRTITVHLLAYLFDPRSTALAE 100


>gi|329922616|ref|ZP_08278168.1| PHP domain protein [Paenibacillus sp. HGF5]
 gi|328941958|gb|EGG38241.1| PHP domain protein [Paenibacillus sp. HGF5]
          Length = 288

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+  S  +G  + +  +         A+AITD + +    E  Q      I  + G 
Sbjct: 12 LHSHTQAS--DGMNTPSENVQLAYERGLGALAITDHDTVAGIEEALQAGERLNIIVVPGV 69

Query: 74 QLD 76
          ++ 
Sbjct: 70 EIS 72


>gi|127513178|ref|YP_001094375.1| phosphotransferase domain-containing protein [Shewanella loihica
          PV-4]
 gi|126638473|gb|ABO24116.1| PHP C-terminal domain protein [Shewanella loihica PV-4]
          Length = 286

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS--QKA 62
          +      + L  H++ S  +G L+ + ++ +   +    +AITD + L    E      +
Sbjct: 1  MTDETRLIDLHSHTTAS--DGQLTPSELVARALDNGVQMLAITDHDTLAGLKEAHSFNDS 58

Query: 63 CAAGIQPIIGCQLD 76
           A  +  I GC++ 
Sbjct: 59 QAEPLTLINGCEIS 72


>gi|24374542|ref|NP_718585.1| TrpH family protein [Shewanella oneidensis MR-1]
 gi|24349134|gb|AAN56029.1|AE015738_4 TrpH family protein [Shewanella oneidensis MR-1]
          Length = 286

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 4/92 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
           L  H++ S  +G L+ + ++ +         AITD + +          +A A  ++ I 
Sbjct: 10  LHSHTTAS--DGHLTPSELVARALEKGVQLFAITDHDTVAGLSEARAFNQAQAEPLKLIS 67

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           G ++                       +  L 
Sbjct: 68  GVEISTRWNSYDIHIVALNFDETHAELLRFLA 99


>gi|114047034|ref|YP_737584.1| phosphotransferase domain-containing protein [Shewanella sp. MR-7]
 gi|113888476|gb|ABI42527.1| PHP C-terminal domain protein [Shewanella sp. MR-7]
          Length = 286

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 4/92 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
           L  H++ S  +G L+ + ++ +         AITD + +          +A A  ++ I 
Sbjct: 10  LHSHTTAS--DGHLTPSELVARALEKGVQLFAITDHDTVAGLSEARAFNQAQAEPLKLIS 67

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           G ++                       +  L 
Sbjct: 68  GVEISTRWNSYDIHIVALNFDETHAELLRFLA 99


>gi|148653782|ref|YP_001280875.1| phosphotransferase domain-containing protein [Psychrobacter sp.
          PRwf-1]
 gi|148572866|gb|ABQ94925.1| PHP C-terminal domain protein [Psychrobacter sp. PRwf-1]
          Length = 309

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G+ S + +L K  A      A+TD + L    E    A A GI  I G 
Sbjct: 21 LHSHSTCS--DGSNSPSELLHKAHAAHIDIFALTDHDTLAGIPEAKATAQALGITLINGV 78

Query: 74 QLD 76
          ++ 
Sbjct: 79 EIS 81


>gi|256750816|ref|ZP_05491701.1| PHP domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750399|gb|EEU63418.1| PHP domain protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 108

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F  L +HS  S  +G  S + ++          I++TD + +    E  + +    I+ I
Sbjct: 2  FADLHMHSKAS--DGTNSPSEVVRLAKEHGLSCISLTDHDTVDGLEEAMEASAKYEIEVI 59

Query: 71 IGCQLDIDMQD 81
           G + +   Q+
Sbjct: 60 PGIEFNCYYQN 70


>gi|255065753|ref|ZP_05317608.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           sicca ATCC 29256]
 gi|255050071|gb|EET45535.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           sicca ATCC 29256]
          Length = 278

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   ++     +    +A+TD ++     E   +A   G++ + G 
Sbjct: 4   LHCHS--TVSDGMLSPAEVVRLAHKNGCTLLALTDHDHTGGIAEARAEADKLGMRFVNGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQGRLKRL 101


>gi|260881699|ref|ZP_05405044.2| PHP domain protein [Mitsuokella multacida DSM 20544]
 gi|260848197|gb|EEX68204.1| PHP domain protein [Mitsuokella multacida DSM 20544]
          Length = 270

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 17 HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC--AAGIQPIIGCQ 74
          H++YS  +G L+   ++ K        +AITD + +       +     A GI  I G +
Sbjct: 2  HTTYS--DGKLTPEELVAKAKEAGLSYMAITDHDTVEGISHLYENGLYPARGIHIIPGIE 59

Query: 75 LD 76
            
Sbjct: 60 FS 61


>gi|269926667|ref|YP_003323290.1| PHP domain protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269790327|gb|ACZ42468.1| PHP domain protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 287

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G      ++          IAITD + +    E        G++ I G 
Sbjct: 11 LHMHTDRS--DGRYPPRELVQLARDVGLKTIAITDHDTVAGVDEAVAAGEELGLEVIPGI 68

Query: 74 QLDIDMQDN 82
          +L   ++  
Sbjct: 69 ELSTTVEKG 77


>gi|117919969|ref|YP_869161.1| phosphotransferase domain-containing protein [Shewanella sp. ANA-3]
 gi|117612301|gb|ABK47755.1| PHP C-terminal domain protein [Shewanella sp. ANA-3]
          Length = 286

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 4/92 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
           L  H++ S  +G L+ + ++ +         AITD + +          +A A  ++ I 
Sbjct: 10  LHSHTTAS--DGHLTPSELVARALEKGVQLFAITDHDTVAGLGEARAFNQAQAEPLKLIS 67

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           G ++                       +  L 
Sbjct: 68  GVEISTRWNSYDIHIVALNFDETHAELLGFLA 99


>gi|93006797|ref|YP_581234.1| PHP-like [Psychrobacter cryohalolentis K5]
 gi|92394475|gb|ABE75750.1| PHP-like [Psychrobacter cryohalolentis K5]
          Length = 315

 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++ +        +A+TD + L    E    A A  IQ I G 
Sbjct: 27 LHCHSTCS--DGTYAPAEVVQRAHTAGINVLALTDHDTLLGIDEARAAAEACNIQLINGV 84

Query: 74 QLD 76
          ++ 
Sbjct: 85 EIS 87


>gi|308389925|gb|ADO32245.1| hypothetical protein NMBB_2081 [Neisseria meningitidis alpha710]
          Length = 278

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   ++     +    +A+TD ++     E   +A    ++ I G 
Sbjct: 4   LHCHS--TVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLDLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDERDENLQNLLAQVRQGRLKRL 101


>gi|189485717|ref|YP_001956658.1| putative histidinol phosphatase [uncultured Termite group 1
          bacterium phylotype Rs-D17]
 gi|170287676|dbj|BAG14197.1| putative histidinol phosphatase [uncultured Termite group 1
          bacterium phylotype Rs-D17]
          Length = 217

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+ +S  +G LS + ++ +       AIA+TD 
Sbjct: 4  LHTHTFFS--DGVLSPSELVYRAKYKGYTAIALTDH 37


>gi|330953599|gb|EGH53859.1| phosphoesterase PHP [Pseudomonas syringae Cit 7]
          Length = 287

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +GALS   ++ +   +    +++TD + L    E    A + G+Q + G 
Sbjct: 5  LHCHSTAS--DGALSPMALVARAHENGVRVLSLTDHDTLEGLEEARAAAHSLGMQLVNGV 62

Query: 74 QLDIDMQD 81
          +L      
Sbjct: 63 ELSCTWGG 70


>gi|325201530|gb|ADY96984.1| PHP domain protein [Neisseria meningitidis M01-240149]
 gi|325207509|gb|ADZ02961.1| PHP domain protein [Neisseria meningitidis NZ-05/33]
          Length = 278

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   ++     +    +A+TD ++     E   +A    ++ I G 
Sbjct: 4   LHCHS--TVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADRLDLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDERDENLQNLLAQVRQGRLKRL 101


>gi|219853268|ref|YP_002467700.1| PHP domain protein [Methanosphaerula palustris E1-9c]
 gi|219547527|gb|ACL17977.1| PHP domain protein [Methanosphaerula palustris E1-9c]
          Length = 221

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 13/100 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ----P 69
           L +H+++S  +G  S+  IL +       AIAITD + +  A      A    I+     
Sbjct: 6   LHIHTNHS-RDGESSVEEILLQAEKVGLDAIAITDHDTMDGA---WYAAK---IKSRVLV 58

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFP-TVPSIVLLVSTAEG 108
           I G ++       L +      P    V   + L   A+G
Sbjct: 59  IPGIEVSTAQGHLLVLGGTSVIPPSLDVIETIRLA-NAQG 97


>gi|171463678|ref|YP_001797791.1| PHP domain protein [Polynucleobacter necessarius subsp.
          necessarius STIR1]
 gi|171193216|gb|ACB44177.1| PHP domain protein [Polynucleobacter necessarius subsp.
          necessarius STIR1]
          Length = 283

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS   + +G L+   + ++  A+     A+TD + L         A A  I  + G 
Sbjct: 11 LHCHSV--ISDGTLTPEELAERAKANGVHLWALTDHDELGGQKRARAAASALNIDYLAGV 68

Query: 74 QLDIDM 79
          ++ +  
Sbjct: 69 EISVTW 74


>gi|239906357|ref|YP_002953098.1| PHP domain protein [Desulfovibrio magneticus RS-1]
 gi|239796223|dbj|BAH75212.1| PHP domain protein [Desulfovibrio magneticus RS-1]
          Length = 221

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+++S  +G L    ++ +       A+A+TD 
Sbjct: 4  LHTHTTFS--DGVLIPAELVRRAVKAGYKAVALTDH 37


>gi|307130976|ref|YP_003882992.1| hypothetical protein Dda3937_00578 [Dickeya dadantii 3937]
 gi|306528505|gb|ADM98435.1| conserved protein [Dickeya dadantii 3937]
          Length = 286

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 5  LEKSPSFVHL-QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
          +  SP+F  L  +HS  +  +G L+   ++ +  + +   +AITD +   +  E      
Sbjct: 1  MPVSPTF-PLYDLHSHTTASDGLLTPTELVQRAVSMRVSVLAITDHDTTAALDEAYAAIQ 59

Query: 64 AAG--IQPIIGCQLDIDMQDN 82
               ++ I G ++    +++
Sbjct: 60 RQALPLRLISGVEISTVWENH 80


>gi|253682289|ref|ZP_04863086.1| PHP domain protein [Clostridium botulinum D str. 1873]
 gi|253562001|gb|EES91453.1| PHP domain protein [Clostridium botulinum D str. 1873]
          Length = 277

 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          + K   F HL      +  +G LS   ++     +    I+ITD +N F   E       
Sbjct: 1  MYKKGDF-HLHT----TASDGKLSPTELVTLAKENGFDIISITDHDNTFGLEEGISSGTK 55

Query: 65 AGIQPIIGCQLD 76
           GI+ I G +L 
Sbjct: 56 LGIKIIPGIELS 67


>gi|315501748|ref|YP_004080635.1| php domain protein [Micromonospora sp. L5]
 gi|315408367|gb|ADU06484.1| PHP domain protein [Micromonospora sp. L5]
          Length = 288

 Score = 57.1 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 12/92 (13%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA---GIQPI 70
          L  HS+ S  +G L+   ++   A      +A+TD +           A A    G+  I
Sbjct: 9  LHTHSTAS--DGTLTPAELVRAAAEAGLDVVALTDHDTTAG----WAPAVAVLPPGLTLI 62

Query: 71 IGCQL---DIDMQDNLKMTNQGKTPFPTVPSI 99
           G ++       +  + +        P  P +
Sbjct: 63 RGAEISCRWFGAEPAIPLHLLAYLFDPAEPHL 94


>gi|312962722|ref|ZP_07777211.1| PHP-like protein [Pseudomonas fluorescens WH6]
 gi|311283097|gb|EFQ61689.1| PHP-like protein [Pseudomonas fluorescens WH6]
          Length = 287

 Score = 57.1 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +GAL+   ++ +        +A+TD + L    E    A A G+Q + G 
Sbjct: 5  LHCHSTAS--DGALAPAVLVARAFEKGVRVLALTDHDTLEGLDEARTAAHALGMQLVNGV 62

Query: 74 QLDIDMQD 81
          +L      
Sbjct: 63 ELSCTWGG 70


>gi|194288920|ref|YP_002004827.1| hypothetical protein RALTA_A0786 [Cupriavidus taiwanensis LMG
           19424]
 gi|193222755|emb|CAQ68758.1| conserved hypothetical protein; nucleic acid binding
           Helix-hairpin-helix motif [Cupriavidus taiwanensis LMG
           19424]
          Length = 135

 Score = 57.1 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L +IKGVG  TARHI+E      PF    D   RV    +  + +  L  AG
Sbjct: 43  ALTSIKGVGAATARHIVEERNKRGPFKDAADLAERV--SGIGPKSVTKLQDAG 93


>gi|145641428|ref|ZP_01797007.1| fumarate hydratase [Haemophilus influenzae R3021]
 gi|145273971|gb|EDK13838.1| fumarate hydratase [Haemophilus influenzae 22.4-21]
          Length = 257

 Score = 57.1 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 1/83 (1%)

Query: 28  SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTN 87
           S   ++ +  A     +A+ D + +    E    A   GI+ I G ++     +   +  
Sbjct: 2   SPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKEVGIELITGVEIS-TNWEGRGIHI 60

Query: 88  QGKTPFPTVPSIVLLVSTAEGYQ 110
            G     T P +  L+ + +  +
Sbjct: 61  VGLNFDKTHPKMTALLQSQKALR 83


>gi|85860226|ref|YP_462427.1| phosphotransferase domain-containing protein [Syntrophus
          aciditrophicus SB]
 gi|85723317|gb|ABC78260.1| php domain containing protein (trph) [Syntrophus aciditrophicus
          SB]
          Length = 281

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H++ S  +G ++ +N++ + +      +AI D + +    E +  A   GI  I   
Sbjct: 4  LHCHTTAS--DGVVTPSNVIRQASRKGIAVLAIADHDTVNGLDEAAGAAEKEGICLIPAI 61

Query: 74 QLDIDMQDN 82
          +L +     
Sbjct: 62 ELSVAFPKG 70


>gi|226227396|ref|YP_002761502.1| hypothetical protein GAU_1990 [Gemmatimonas aurantiaca T-27]
 gi|226090587|dbj|BAH39032.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 299

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
            +P+FV LQVH++ S  +GAL+   ++      Q  AIAITD + +    E +    A 
Sbjct: 21 ASTPAFVDLQVHTTAS--DGALAPAVVVQAAHDAQLAAIAITDHDTVDGLDEATAAGEAL 78

Query: 66 GIQPIIGCQLDIDMQDN 82
          G++ + G +L    ++ 
Sbjct: 79 GVRIVPGVELSTHFENE 95


>gi|114566774|ref|YP_753928.1| PHP family metal-dependent phosphoesterase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114337709|gb|ABI68557.1| metal-dependent phosphoesterases (PHP family) [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 284

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 34/174 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS---ALEFSQKACAAGIQP- 69
           L  H+  S  +G LS   ++ +      P +AITD + +     A  F +      +   
Sbjct: 5   LHTHT--SASDGLLSPGEVISQAKDIGLPGLAITDHDTVDGLEEARRFIE---ENNLALD 59

Query: 70  -IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            I G +++ ++ +  K  +           ++L        +RL E + +  L    K  
Sbjct: 60  FIPGIEMNTELAE--KEIHILGYFIDYHNRLLL--------KRLQE-IKKARLERARKMI 108

Query: 129 VR-------ICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSS-QVAEKRLLTF 174
           +R       I    ++ I    LI         I +    N      ++    +
Sbjct: 109 MRLSNMGFNISFEQVERIAQGNLIA-----RPHIAQVLRENDYVSSIKEAFDKY 157


>gi|238062527|ref|ZP_04607236.1| phosphotransferase [Micromonospora sp. ATCC 39149]
 gi|237884338|gb|EEP73166.1| phosphotransferase [Micromonospora sp. ATCC 39149]
          Length = 288

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 18/92 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA---GIQPI 70
           L  HS+ S  +G L+   ++   A      +AITD +           A AA   G+  +
Sbjct: 9   LHAHSTAS--DGTLTPAELVRAAADAGLDVLAITDHDTTAG----WASAVAALPPGLALV 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
            G ++                  P    ++  
Sbjct: 63  RGAEIS---------CRWHGADPPVALHLLAY 85


>gi|117620611|ref|YP_857425.1| phosphotransferase domain-containing protein [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117562018|gb|ABK38966.1| PHP domain containing protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 293

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 4/92 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
           L  H++ S  +G LS   ++ + AA     +A+TD + L     +  +  A    ++ + 
Sbjct: 5   LHCHTTAS--DGVLSPAELVRRAAAQGVEVLAVTDHDTLAGLDEVRRTIDAEQLPLRLVS 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           G ++    + +                +  L 
Sbjct: 63  GVEISTGWEHHEIHIVALGVDEKNPQLVAFLA 94


>gi|323705371|ref|ZP_08116946.1| PHP domain protein [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535273|gb|EGB25049.1| PHP domain protein [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 271

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 68/210 (32%), Gaps = 30/210 (14%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           F  L +H++ S  +G      ++          IAITD + L    E    +    ++ I
Sbjct: 2   FADLHIHTTKS--DGTHKPKEVVHLAKKAGLSIIAITDHDTLEGIDEAIHVSKFFDVEII 59

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL----VSRMYLLDQGK 126
            G +L+        +   G          +         +RLIE+    +SR  L+ Q  
Sbjct: 60  PGIELN-SYDGKQDVHILGYFIDHNNEDFL---------RRLIEIRDSRISRSKLMIQKL 109

Query: 127 QS--VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV-AEKRLLTFKKLFGDRLY 183
               V I    + +   E  I         I RA          ++    +    G   Y
Sbjct: 110 NEIGVNINYDDVLKYTKESYIG-----RPHIARAIVEAGYSKSVKEAFDRYIGE-GQPAY 163

Query: 184 VNLQRHRGYDRYRESQVVQLAYTHELPLVA 213
           V   R+R +       +  +     +P++A
Sbjct: 164 VE--RYRLHPFESIKMIKNIG---GIPVLA 188


>gi|225181650|ref|ZP_03735090.1| PHP domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225167631|gb|EEG76442.1| PHP domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 513

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VH+ +S  +G   +  ++   A      +A+TD 
Sbjct: 277 LHVHTDWS--DGTADVEKMVKAAAELGYEYLAVTDH 310


>gi|257470616|ref|ZP_05634706.1| PHP domain protein [Fusobacterium ulcerans ATCC 49185]
          Length = 300

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          + K+     L +HS YS  +G  S   I+     ++   +A+TD N++    E ++    
Sbjct: 1  MSKNID---LHMHSLYSD-DGEFSPEEIIAIGKKEEMEIMALTDHNSVKGVDEMTEYGKK 56

Query: 65 AGIQPIIGCQLD 76
          AGI+ I G ++D
Sbjct: 57 AGIKVISGVEID 68


>gi|254507057|ref|ZP_05119195.1| php domain containing protein (trph) [Vibrio parahaemolyticus 16]
 gi|219550052|gb|EED27039.1| php domain containing protein (trph) [Vibrio parahaemolyticus 16]
          Length = 283

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 78/279 (27%), Gaps = 55/279 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H++ S  +G L  N ++D+  +     IAITD + +                I+ I 
Sbjct: 5   LHSHTTAS--DGRLPPNELIDRALSFNLEVIAITDHDTVDGLAPAHDYINENQLPIKLIN 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS---TAEGYQRLI--EL----------- 115
           G ++    Q+             +     L+       EG   LI   L           
Sbjct: 63  GIEISTVWQNKDIHIVGLNIDPNSPALQALIAQQKAHREGRAELIAHRLSKATREGVLEE 122

Query: 116 ---------VSRMY----LLDQGKQSV--RICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
                    ++R +    L++ G      ++   +L      G +     S      A  
Sbjct: 123 VKQIAGDAPITRAHFAKWLVENGYAKTMQQVFKKYLTR-NNPGYVPPAWCSMSEAVEAIH 181

Query: 161 F----------NSSQVAEKRLLTFKKLF---GDRLYVNL-QRHRGYDRYRESQVVQLAYT 206
                          +  K +      F   G    + + Q  +G    R   +   A  
Sbjct: 182 AAGGQAVLAHPGRYDLTAKWIKRLLAAFVEAGGDA-MEIAQPQQGQQERRN--LADYAIQ 238

Query: 207 HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
           +   L+A+  S F     +      + +        KD 
Sbjct: 239 Y--KLLASQGSDFHYPSPWMELGRNLWLPSGVEPVWKDW 275


>gi|331001830|ref|ZP_08325352.1| hypothetical protein HMPREF0491_00214 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412804|gb|EGG92187.1| hypothetical protein HMPREF0491_00214 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 290

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 43/139 (30%), Gaps = 39/139 (28%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + K   ++ L  HS+ S  +G  S  ++           IA+TD + +        +   
Sbjct: 1   MNKISGYIDLHTHSTSS--DGTYSPTDVAVLAKQASLSLIALTDHDTMAGV----DECFK 54

Query: 65  AGIQP----IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
            G++     I G ++    ++                 I+       GY     L+S  +
Sbjct: 55  KGLKLGLFVIPGVEMSCVYEEKEI-------------HIL-------GY-----LLSTSF 89

Query: 121 LLDQGKQSVRICLSWLQEI 139
             D       I      ++
Sbjct: 90  SQD----KPDIPKEIFSDL 104


>gi|152992587|ref|YP_001358308.1| family X DNA polymerase IV [Sulfurovum sp. NBC37-1]
 gi|151424448|dbj|BAF71951.1| DNA polymerase IV, family X [Sulfurovum sp. NBC37-1]
          Length = 571

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+ YS  +G  S+  +           IAITD 
Sbjct: 342 LHMHTHYS--DGHNSIEEMALAAKEHGYEYIAITDH 375


>gi|330889221|gb|EGH21882.1| phosphotransferase domain-containing protein [Pseudomonas
          syringae pv. mori str. 301020]
          Length = 287

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +GALS   ++ +   +    +++TD + L    E    A + G+Q + G 
Sbjct: 5  LHCHSTAS--DGALSPTALVARAHENGVRVLSLTDHDTLEGLEEARAVAHSLGMQLVNGV 62

Query: 74 QLDIDMQD 81
          +L      
Sbjct: 63 ELSCTWGG 70


>gi|328479974|gb|EGF49012.1| DNA polymerase III PolC [Lactobacillus rhamnosus MTCC 5462]
          Length = 108

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 805 FCQDARQFNIQIMPPSVNTP-CVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
              +  +   +I    V      DF +  D+ I     A+ G+G   A+ I+ A  +KPF
Sbjct: 7   IANECLERGFKIKMIDVTKSDSHDFLIQDDHTILAPFRAVPGLGDNVAKQIVAAREEKPF 66

Query: 863 DSLEDFCSRVDSKKLNRRVL 882
            S ED  +R    K+++ ++
Sbjct: 67  LSKEDLANR---GKVSKTLI 83


>gi|238927423|ref|ZP_04659183.1| PHP family metal-dependent phosphoesterase [Selenomonas flueggei
          ATCC 43531]
 gi|238884705|gb|EEQ48343.1| PHP family metal-dependent phosphoesterase [Selenomonas flueggei
          ATCC 43531]
          Length = 276

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          L +H+++S  +G  +   I++         I+ITD + +    E  +
Sbjct: 5  LHIHTTFS--DGRNTPEEIVEAAKEAGLRYISITDHDTVEGVTELYE 49


>gi|167947395|ref|ZP_02534469.1| DNA polymerase III, alpha subunit [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 35

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 839 LAAIKGVGTTTARHIM-EASADKPFDSLEDFCSRV 872
           + AIKGVG +    I+ E  A+ PF  L  FC R+
Sbjct: 1   MGAIKGVGESAIESIVLERDANGPFADLFSFCRRI 35


>gi|331694930|ref|YP_004331169.1| PHP domain-containing protein [Pseudonocardia dioxanivorans
          CB1190]
 gi|326949619|gb|AEA23316.1| PHP domain protein [Pseudonocardia dioxanivorans CB1190]
          Length = 287

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++   AA     +AITD +           A  AG++ + G 
Sbjct: 6  LHAHSTAS--DGTDTPEELVATAAAAGVDVLAITDHDTTGGWARA-VGALPAGMRLVRGA 62

Query: 74 QLDIDMQDNLK 84
          +      D   
Sbjct: 63 EFSCVSDDGRG 73


>gi|57233605|ref|YP_182305.1| phosphotransferase domain-containing protein [Dehalococcoides
          ethenogenes 195]
 gi|57224053|gb|AAW39110.1| PHP domain N-terminal region family protein [Dehalococcoides
          ethenogenes 195]
          Length = 287

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          +      V L +H+  ++ +G  S  NI+ K A      IAI D +NL       +    
Sbjct: 1  MSSK---VDLHIHT--TVSDGVHSPENIVAKAAKVNMEYIAICDHDNLGGVGIAIEATRR 55

Query: 65 A-GIQPIIGCQLDIDMQDN 82
             ++ I G ++  D    
Sbjct: 56 YPKLRVIPGVEISTDYSGG 74


>gi|297538006|ref|YP_003673775.1| PHP domain-containing protein [Methylotenera sp. 301]
 gi|297257353|gb|ADI29198.1| PHP domain protein [Methylotenera sp. 301]
          Length = 299

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+  ++ +G LS   ++   A      +A+TD ++       +++A   G+  I G 
Sbjct: 7  LHSHT--TVSDGMLSPVELVAYAAKQGVDVLALTDHDDTGGLAVAAEEAKRWGLHFINGV 64

Query: 74 QLDIDMQDN 82
          ++ +  +  
Sbjct: 65 EISVTWKKR 73


>gi|223984247|ref|ZP_03634393.1| hypothetical protein HOLDEFILI_01687 [Holdemania filiformis DSM
          12042]
 gi|223963778|gb|EEF68144.1| hypothetical protein HOLDEFILI_01687 [Holdemania filiformis DSM
          12042]
          Length = 289

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 13/73 (17%)

Query: 15 QVHS------SYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           +H+       Y+          I+     +    +AITD NN+ S  E +    A GI+
Sbjct: 7  HIHTIVSTDADYT-------PAEIIRMAKKNGVKTLAITDHNNVASVAEAASLGEAEGIR 59

Query: 69 PIIGCQLDIDMQD 81
           I G ++D D + 
Sbjct: 60 VIPGIEIDCDFEG 72


>gi|171742435|ref|ZP_02918242.1| hypothetical protein BIFDEN_01546 [Bifidobacterium dentium ATCC
          27678]
 gi|171278049|gb|EDT45710.1| hypothetical protein BIFDEN_01546 [Bifidobacterium dentium ATCC
          27678]
          Length = 311

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            H+ +S  +G  +   +L++  +     +AITD +      +  + A  A +  + G +
Sbjct: 17 HCHTVFS--DGTETPRTLLEQAKSRGLQGVAITDHDTTAGWSDAQRAATWAELPLLRGTE 74

Query: 75 LDIDMQDNLKMTNQGKTPFPTVPSI 99
          +     + + +        P    I
Sbjct: 75 IT-ADDNRISVHMLAFQYDPDNAQI 98


>gi|217972842|ref|YP_002357593.1| PHP domain-containing protein [Shewanella baltica OS223]
 gi|217497977|gb|ACK46170.1| PHP domain protein [Shewanella baltica OS223]
          Length = 286

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 5/101 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL--EFSQKACAAGIQPII 71
           L  H++ S  +G L+ + ++ +         AITD + +           + A  ++ I 
Sbjct: 10  LHSHTTAS--DGQLTPSELVARALEKGVQLFAITDHDTVAGLPEARAFNLSQAEPLKLIS 67

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
           G ++                       +  L       + L
Sbjct: 68  GVEISTRWNSYDIHIVALNFDADNPALLAFL-ENQRELREL 107


>gi|153001237|ref|YP_001366918.1| phosphotransferase domain-containing protein [Shewanella baltica
           OS185]
 gi|151365855|gb|ABS08855.1| PHP domain protein [Shewanella baltica OS185]
          Length = 302

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 5/101 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL--EFSQKACAAGIQPII 71
           L  H++ S  +G L+ + ++ +         AITD + +           + A  ++ I 
Sbjct: 26  LHSHTTAS--DGQLTPSELVARALEKGVQLFAITDHDTVAGLPEARAFNLSQAEPLKLIS 83

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
           G ++                       +  L       + L
Sbjct: 84  GVEISTRWNSYDIHIVALNFDADNPALLAFL-ENQRELREL 123


>gi|296314597|ref|ZP_06864538.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           polysaccharea ATCC 43768]
 gi|296838636|gb|EFH22574.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Neisseria
           polysaccharea ATCC 43768]
          Length = 278

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   ++     +    +A+TD ++     E   +A   G++ + G 
Sbjct: 4   LHCHS--TVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGISEARAEADKLGLRFVNGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLAQVRQGRLKRL 101


>gi|306822345|ref|ZP_07455724.1| PHP family metal-dependent phosphoesterase [Bifidobacterium
          dentium ATCC 27679]
 gi|309802144|ref|ZP_07696253.1| PHP domain protein [Bifidobacterium dentium JCVIHMP022]
 gi|304554343|gb|EFM42251.1| PHP family metal-dependent phosphoesterase [Bifidobacterium
          dentium ATCC 27679]
 gi|308221224|gb|EFO77527.1| PHP domain protein [Bifidobacterium dentium JCVIHMP022]
          Length = 311

 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            H+ +S  +G  +   +L++  +     +AITD +      +  + A  A +  + G +
Sbjct: 17 HCHTVFS--DGTETPRTLLEQAKSRGLQGVAITDHDTTAGWSDAQRAATWAELPLLRGTE 74

Query: 75 LDIDMQDNLKMTNQGKTPFPTVPSI 99
          +     + + +        P    I
Sbjct: 75 IT-ADDNRISVHMLAFQYDPDNAQI 98


>gi|313895925|ref|ZP_07829479.1| PHP domain protein [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975350|gb|EFR40811.1| PHP domain protein [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 277

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 18/111 (16%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--ACAAGIQPII 71
           L +H+++S  +G  +   I++   A     I+ITD +++    E  +     A       
Sbjct: 5   LHIHTTFS--DGRDTPEEIVEAAKAAGLRYISITDHDSVEGVTELYESGRCPA------- 55

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL--VSRMY 120
           G QL I            +T       I +      G Q   +L  +S   
Sbjct: 56  GSQLRIIPGVGFSADYPDRTVHILGYGIDIY---NAGLQE--KLEELSEAR 101


>gi|297621028|ref|YP_003709165.1| phosphoesterase [Waddlia chondrophila WSU 86-1044]
 gi|297376329|gb|ADI38159.1| phosphoesterase [Waddlia chondrophila WSU 86-1044]
          Length = 274

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 10/67 (14%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ----KACAAGIQP 69
          L  HS+ S  +G  S   ++D         ++ITD + L             A       
Sbjct: 9  LHCHSTCS--DGTASPKELIDLAIDQGLSGLSITDHDTL----NAYSTALPYAKKLNFPL 62

Query: 70 IIGCQLD 76
          + G +  
Sbjct: 63 LTGVEFS 69


>gi|319936965|ref|ZP_08011375.1| PHP domain-containing protein [Coprobacillus sp. 29_1]
 gi|319807901|gb|EFW04480.1| PHP domain-containing protein [Coprobacillus sp. 29_1]
          Length = 278

 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 49/138 (35%), Gaps = 22/138 (15%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC----AAG 66
           +  L VH+++S  +G   + ++L          IAITD +     ++   +        G
Sbjct: 3   YADLHVHTNHS--DGTKEIRDVLMMAKEKGIQRIAITDHDT----IDHLDEVKRLGEELG 56

Query: 67  IQPIIGCQLDIDMQDNLKMTN-QGKTPFPTVPSIVLLVS----TAEGYQRLIELVSRMYL 121
           I+ I G ++    +D  K  +  G       P +  L        + Y    +L+     
Sbjct: 57  IRTIRGVEMSCYDEDVAKKIHIIGLWLNEKAPHVEALCQKTLACRDAYHH--KLI----- 109

Query: 122 LDQGKQSVRICLSWLQEI 139
            +  ++   I     ++ 
Sbjct: 110 ENLSQKGYHITYEDAKKY 127


>gi|315268102|gb|ADT94955.1| PHP domain protein [Shewanella baltica OS678]
          Length = 286

 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 5/101 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL--EFSQKACAAGIQPII 71
           L  H++ S  +G L+ + ++ +         AITD + +           + A  ++ I 
Sbjct: 10  LHSHTTAS--DGQLTPSELVARALEKGVQLFAITDHDTVAGLPEARAFNLSQAEPLKLIS 67

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
           G ++                       +  L       + L
Sbjct: 68  GVEISTRWNSYDIHIVALNFDADNPALLAFL-ENQRELREL 107


>gi|168187863|ref|ZP_02622498.1| PHP domain protein [Clostridium botulinum C str. Eklund]
 gi|169294300|gb|EDS76433.1| PHP domain protein [Clostridium botulinum C str. Eklund]
          Length = 277

 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          + K   F HL      +  +G LS + +++         IAITD +N F   E       
Sbjct: 1  MYKKGDF-HLHT----TASDGKLSPSELVNLAKKQAFDIIAITDHDNTFGLKEGISTGKE 55

Query: 65 AGIQPIIGCQLD 76
           G++ + G +L 
Sbjct: 56 IGVKVLPGIELS 67


>gi|37521617|ref|NP_924994.1| hypothetical protein gll2048 [Gloeobacter violaceus PCC 7421]
 gi|35212615|dbj|BAC89989.1| gll2048 [Gloeobacter violaceus PCC 7421]
          Length = 269

 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          + L  H++ S  +G L+ + ++   AA    A+AITD + L    E  +     G++ I 
Sbjct: 2  IELHCHTTCS--DGTLTPSELVASAAAAGITALAITDHDTLSGWPEAHEACLRHGLELIP 59

Query: 72 GCQL-DIDMQDNLKMTNQGKTPFPTVPSI 99
          G +L  +    +L +      P    P +
Sbjct: 60 GLELSTVHNSSSLHILGFYPDPVQLAPFL 88


>gi|160875911|ref|YP_001555227.1| phosphotransferase domain-containing protein [Shewanella baltica
           OS195]
 gi|160861433|gb|ABX49967.1| PHP domain protein [Shewanella baltica OS195]
          Length = 302

 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 5/101 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL--EFSQKACAAGIQPII 71
           L  H++ S  +G L+ + ++ +         AITD + +           + A  ++ I 
Sbjct: 26  LHSHTTAS--DGQLTPSELVARALEKGVQLFAITDHDTVAGLPEARAFNLSQAEPLKLIS 83

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
           G ++                       +  L       + L
Sbjct: 84  GVEISTRWNSYDIHIVALNFDADNPALLAFL-ENQRELREL 123


>gi|310778048|ref|YP_003966381.1| PHP domain protein [Ilyobacter polytropus DSM 2926]
 gi|309747371|gb|ADO82033.1| PHP domain protein [Ilyobacter polytropus DSM 2926]
          Length = 278

 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          HL      ++ +GALS   +++K        +AITD + +    E  +KA   GI+ I G
Sbjct: 5  HLHT----TVSDGALSPTELVEKAYEKGIKVLAITDHDTVDGLEEGRKKALELGIEFING 60

Query: 73 CQLDIDM 79
           ++  D 
Sbjct: 61 IEISCDW 67


>gi|304411910|ref|ZP_07393521.1| PHP domain protein [Shewanella baltica OS183]
 gi|307303322|ref|ZP_07583077.1| PHP domain protein [Shewanella baltica BA175]
 gi|304349770|gb|EFM14177.1| PHP domain protein [Shewanella baltica OS183]
 gi|306913682|gb|EFN44104.1| PHP domain protein [Shewanella baltica BA175]
          Length = 302

 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 5/101 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL--EFSQKACAAGIQPII 71
           L  H++ S  +G L+ + ++ +         AITD + +           + A  ++ I 
Sbjct: 26  LHSHTTAS--DGQLTPSELVARALEKGVQLFAITDHDTVAGLPEARAFNLSQAEPLKLIS 83

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
           G ++                       +  L       + L
Sbjct: 84  GVEISTRWNSYDIHIVALNFDADNPALLAFL-ENQRELREL 123


>gi|307266752|ref|ZP_07548278.1| PHP domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918243|gb|EFN48491.1| PHP domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 572

 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH++YS  +GA +L  +++         I ITD 
Sbjct: 340 HVHTTYS--DGASTLIEMVEAARKLGYKYIGITDH 372


>gi|330830521|ref|YP_004393473.1| metal-dependent phosphoesterase, PHP family [Aeromonas veronii
           B565]
 gi|328805657|gb|AEB50856.1| Metal-dependent phosphoesterase, PHP family [Aeromonas veronii
           B565]
          Length = 293

 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
           L  H++ S  +G LS   ++ + A  Q   +A+TD + L     +  + +A    ++ + 
Sbjct: 5   LHCHTTAS--DGVLSPAELVRRAAEKQVEVLAVTDHDTLAGLDEVRRTIEAEQLPLRLVS 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           G ++    + +                +  L 
Sbjct: 63  GVEISTGWEHHEIHIVALGVDEKNPQLLDFLA 94


>gi|296133371|ref|YP_003640618.1| PHP domain protein [Thermincola sp. JR]
 gi|296031949|gb|ADG82717.1| PHP domain protein [Thermincola potens JR]
          Length = 575

 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +G  S+  I+++        IAITD 
Sbjct: 345 LHLHSNWS--DGVNSIEQIVEQAKKMGYEYIAITDH 378


>gi|227326054|ref|ZP_03830078.1| putative phosphoesterase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 290

 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 77/262 (29%), Gaps = 59/262 (22%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H++ S  +G L+   ++ +    +   +AITD +      E  Q     G  ++ I 
Sbjct: 16  LHSHTTAS--DGLLTPAALVSRAVDMRVSVLAITDHDTTAGLDEAQQAIAQQGLPLRLIP 73

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIV-LL---V---------------STA-----E 107
           G ++   + +N ++   G       P++  LL                            
Sbjct: 74  GVEIS-TLWENHEIHIVGLGMDSAHPALTGLLQQQAACRQNRAEQIAARLEKNRIPDALA 132

Query: 108 GYQRLIELVSRMYLLDQGKQSVRICL-------SWLQEIGTEGLIMLTGGSSGPIDRAFF 160
           G Q    L +   +         I L          ++   +G I         I +A  
Sbjct: 133 GAQ---RLATGGQITRAHFARYLIELGIAANMNQVFKKYLAKGKIGYVPPQWCTIPQAIE 189

Query: 161 F-------------NSSQVAEKRLLTFKKLFGDR--LYVNL-QRHRGYDRYRESQVVQLA 204
                             +  K L      F +   + + + Q  +  D    +Q+ + A
Sbjct: 190 AIHQSGGVSVLAHPGRYDLTAKWLKRLLATFAESGGIAMEVAQCQQAPDER--TQLGRYA 247

Query: 205 YTHELPLVATNNSLFLSEEDYE 226
               L  +A+  S F     + 
Sbjct: 248 RDFNL--MASQGSDFHLPCAWI 267


>gi|289578765|ref|YP_003477392.1| PHP domain protein [Thermoanaerobacter italicus Ab9]
 gi|289528478|gb|ADD02830.1| PHP domain protein [Thermoanaerobacter italicus Ab9]
          Length = 337

 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 35/149 (23%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN---LF--------SALEFSQKA 62
           L  H+++S  +G  S   ++   A      +AITD +    L+        S  EF   A
Sbjct: 30  LHCHTTHS--DGNDSPEELIINAAKSGLKVVAITDHDVPPPLYLDTPQGRISVKEF---A 84

Query: 63  CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS--------TAEGYQRLIE 114
              G++ ++G +   D   +       +  +       LL            E Y++L E
Sbjct: 85  HQHGVEIVLGIEFSCDTYVDDVHILGYRMDWENP----LLAEAVERMRRSKTEAYRKLCE 140

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEG 143
           +++        K       + + +   E 
Sbjct: 141 ILTA-------KGMPIDYENEILKYIDED 162


>gi|217970100|ref|YP_002355334.1| PHP domain protein [Thauera sp. MZ1T]
 gi|217507427|gb|ACK54438.1| PHP domain protein [Thauera sp. MZ1T]
          Length = 301

 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  S+ +G L    ++ +  A+    +A+TD + L         A A G+  + G 
Sbjct: 16 LHCHS--SVSDGWLEPEALVLRAIANGVELLALTDHDELGGIASAQLVARAHGLAFVPGV 73

Query: 74 QLDIDMQDN 82
          ++ +     
Sbjct: 74 EISVSFAGE 82


>gi|167772831|ref|ZP_02444884.1| hypothetical protein ANACOL_04219 [Anaerotruncus colihominis DSM
           17241]
 gi|167664764|gb|EDS08894.1| hypothetical protein ANACOL_04219 [Anaerotruncus colihominis DSM
           17241]
          Length = 278

 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 14/102 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+  S  +G+  +++++          +AITD + +       Q     GI  I G 
Sbjct: 5   LHCHTRVS--DGSTGIDDVVLYAKRGGLDFVAITDHDTMAGVSRAEQLGRRCGIGVIAGA 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVL-LVSTAEGYQRLIE 114
           +L        +              ++  L    +  + L++
Sbjct: 63  ELSAWDFVRKRKV-----------HLLCYLPKNPDRLEGLMK 93


>gi|167630611|ref|YP_001681110.1| phosphoesterase php, n-terminal, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167593351|gb|ABZ85099.1| phosphoesterase php, n-terminal, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 291

 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 53/172 (30%), Gaps = 26/172 (15%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H+  ++ +G  S   ILD         ++ITD  ++   LE +  A   GI+ I G 
Sbjct: 16  LHLHT--TVSDGLHSPMEILDMAVQAGLTTLSITDHESIEGCLEIAGAADKKGIRVIPGV 73

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY--------QRLIEL---------V 116
           +L +    N                +  L    +          + L +L         V
Sbjct: 74  ELLVTYAGNEIHLLGYGMDLTDGSFLQRLAELRQARNIVAEQTVRNLQKLGIPLAWEDVV 133

Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
           S  +          I    +  +   GL  LT  +   I      +     E
Sbjct: 134 SIAHPRGAI-SKGHI----IHALHLGGL--LTHPAQEFIRLYLSRDGLAHVE 178


>gi|167746211|ref|ZP_02418338.1| hypothetical protein ANACAC_00916 [Anaerostipes caccae DSM 14662]
 gi|167654204|gb|EDR98333.1| hypothetical protein ANACAC_00916 [Anaerostipes caccae DSM 14662]
          Length = 302

 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 80/274 (29%), Gaps = 59/274 (21%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA-----------------L 56
           L +HS  S  +G L    +L         A A+TD + +                    +
Sbjct: 29  LHLHSDAS--DGTLKPEEVLRAAKEKGLYAFALTDHDTVAGIPPILHSGELTGIHFMPGI 86

Query: 57  EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
           E S +A    I  I+G  +DI  Q+ L      +                   + L    
Sbjct: 87  ELSCEAEKHEIH-ILGYHIDICNQNLLNTLEGLRRGRRQ--------------RNLS--- 128

Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
               ++++ ++  + + L  L     + +I     +     R          +++   FK
Sbjct: 129 ----MIEKFREDGIPMTLEKLLHGNEQTVI-----TRAHFARVLIEEGYCANKEQA--FK 177

Query: 176 KLFGD--RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFL--SEEDYEAHDVL 231
           K  GD  R Y+          +  +  V+L        V  +   +   + E  E    L
Sbjct: 178 KYVGDGCRYYI------PKPYFAPADAVRLIKDAGGTAVLAHPFQYHLSNAELEELIREL 231

Query: 232 MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
           ++     +              L+       + +
Sbjct: 232 ISFGLGGIEVYHSSHHHGQTVKLRQWCRKYGMLA 265


>gi|315646167|ref|ZP_07899287.1| PHP domain protein [Paenibacillus vortex V453]
 gi|315278366|gb|EFU41682.1| PHP domain protein [Paenibacillus vortex V453]
          Length = 289

 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+  S  +G    +  +         A+AITD + +    E  Q      +  + G 
Sbjct: 12 LHSHTQAS--DGMNRPSENVQLAFERGLGALAITDHDTVAGVEEALQAGERLNMVVVPGV 69

Query: 74 QLD 76
          ++ 
Sbjct: 70 EIS 72


>gi|298369655|ref|ZP_06980972.1| PHP domain protein [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282212|gb|EFI23700.1| PHP domain protein [Neisseria sp. oral taxon 014 str. F0314]
          Length = 278

 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   ++     +    +A+TD ++     E   +A A G++ + G 
Sbjct: 4   LHCHS--TVSDGMLSPAEVVRLAHQNGCTLLALTDHDHTGGIAEARAEADAIGLRFVNGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFNEQDENLQNLLAQVRQGRLKRL 101


>gi|119356499|ref|YP_911143.1| phosphotransferase domain-containing protein [Chlorobium
          phaeobacteroides DSM 266]
 gi|119353848|gb|ABL64719.1| PHP C-terminal domain protein [Chlorobium phaeobacteroides DSM
          266]
          Length = 286

 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G  +   I++K AA    AI+ITD +++    +    A   G++ I G 
Sbjct: 18 LHIHTKCS--DGIFTPEQIIEKAAAVGLKAISITDHDSVLGIDKAKPLALTKGVELIPGV 75

Query: 74 QLD 76
          ++ 
Sbjct: 76 EMS 78


>gi|71279433|ref|YP_270195.1| phosphotransferase domain-containing protein [Colwellia
          psychrerythraea 34H]
 gi|71145173|gb|AAZ25646.1| PHP domain protein [Colwellia psychrerythraea 34H]
          Length = 301

 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 8/81 (9%)

Query: 7  KSPSFVH----LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
          K+  F H    L  H++ S  +G LS   ++D+ A  Q   +AITD + +       +  
Sbjct: 15 KTEGFAHKRIDLHSHTNCS--DGGLSPQTLIDRAANFQIDVLAITDHDTVAGLDIAQKHI 72

Query: 63 CAAGI--QPIIGCQLDIDMQD 81
              I  + I G ++    Q 
Sbjct: 73 EDKNIPLKLIDGIEISTAWQG 93


>gi|303243512|ref|ZP_07329854.1| PHP domain protein [Methanothermococcus okinawensis IH1]
 gi|302486073|gb|EFL48995.1| PHP domain protein [Methanothermococcus okinawensis IH1]
          Length = 222

 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 64/219 (29%), Gaps = 61/219 (27%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSALEFSQK-------ACA 64
             H+ +S  +G L  + ++ +       AIAITD     N        ++       A  
Sbjct: 8   HTHTVFS--DGELIPSELVRRAKVLNHKAIAITDHGDASN-------YKELIYKTTLAKE 58

Query: 65  A-----GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                  IQ I+G +L         +    K        IV+ V             + +
Sbjct: 59  ELKNYWDIQLIVGIEL--THIPAKSIPKMAKKCKDIGAEIVV-VHGE----------TIV 105

Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
             +++           +  +   GLI           +    N+                
Sbjct: 106 EPVEEKTNYYTSLSEDVDILAHPGLI------DDETAQNIKENN---------------- 143

Query: 180 DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSL 218
             +++ +    G+       V+ +A  +++P +   ++ 
Sbjct: 144 -NIFLEITSRNGH-SLTNGHVLNIARKYDIPTLINTDTH 180


>gi|312143800|ref|YP_003995246.1| PHP domain protein [Halanaerobium sp. 'sapolanicus']
 gi|311904451|gb|ADQ14892.1| PHP domain protein [Halanaerobium sp. 'sapolanicus']
          Length = 575

 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFS 54
           L +HS YS  +GA ++  +  K A      IA+TD +   N+  
Sbjct: 346 LHLHSRYS--DGAFTIKKMAQKAAERGYEYIAVTDHSQSLNIAG 387


>gi|319943943|ref|ZP_08018223.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Lautropia
           mirabilis ATCC 51599]
 gi|319742704|gb|EFV95111.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Lautropia
           mirabilis ATCC 51599]
          Length = 288

 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 8/98 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H++ S  +G LS   ++++  A+    +A+TD + L    E    A A G+  I G 
Sbjct: 10  LHSHTTRS--DGMLSPTALVERARANGVDMLALTDHDVLDGLPEARAAARAEGLVLIPGV 67

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLV---STAEG 108
           ++ I            +          LL    +   G
Sbjct: 68  EVSITWAGETIHIVGLRVDPQDA---TLLAGLEANRAG 102


>gi|332174587|gb|AEE23841.1| PHP domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 288

 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 87/279 (31%), Gaps = 56/279 (20%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACA------A 65
           L  H+ YS  +G LS   ++D+    Q   +AITD + + +       Q           
Sbjct: 5   LHCHTYYS--DGQLSPVELVDRANNMQVDVLAITDHDTVQALDEARAHQAKQKRLMHIVN 62

Query: 66  GIQP----------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL--LVSTAEGYQRLI 113
           GI+           I+G  ++ D +   +   + K         +   L     G + ++
Sbjct: 63  GIELSTSWHNFDIHILGLNVNKDDELFQQRLVEQKNERDERAQKMADKLAK--AGVENVL 120

Query: 114 ---ELVS------RMYLLD--QGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF-- 160
              +L+S      R +       ++ VR   S  ++   +G           I+ A    
Sbjct: 121 DDAKLLSGEGQLTRAHFARVLVERKEVRDFESAFKKYLGKGKRAHVKPRWISIEEAVQWI 180

Query: 161 -----------FNSSQVAEKRLLTFKKLF----GDRLYVNLQRHRGYDRYRESQVVQLAY 205
                           +  K L      F    GD   +     R     R   +V+LA 
Sbjct: 181 HDAGGKAVIAHPGHYDMTAKWLRRLVAQFKEAGGDG--IETTHARINPEKR-KLIVELAT 237

Query: 206 THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKD 244
            + L   A ++  F+S    E    L    H T +    
Sbjct: 238 EYNLQASAGSDFHFVSRWT-ELGRNLGVPEHLTPIWHDW 275


>gi|284162331|ref|YP_003400954.1| PHP domain protein [Archaeoglobus profundus DSM 5631]
 gi|284012328|gb|ADB58281.1| PHP domain protein [Archaeoglobus profundus DSM 5631]
          Length = 213

 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 9/70 (12%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT---NNLFSALEFSQKAC----AAG 66
          L VHS +S  +G L  + I+ + A      +AITD    +N+ S L+  +K         
Sbjct: 4  LHVHSVFS--DGELIPSEIVRRCAEIGYEGVAITDHADFSNISSILKSLEKLKDVRDDYE 61

Query: 67 IQPIIGCQLD 76
          I  +IG ++ 
Sbjct: 62 IPVLIGVEIT 71


>gi|300788855|ref|YP_003769146.1| phosphoesterase [Amycolatopsis mediterranei U32]
 gi|299798369|gb|ADJ48744.1| putative phosphoesterase [Amycolatopsis mediterranei U32]
          Length = 272

 Score = 56.0 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G    + +           +A+TD +           A +AG++ + G 
Sbjct: 5  LHAHSTAS--DGTTPPSELPRLATEAGLTVLALTDHDTFAGLPAAL--AASAGVEIVPGV 60

Query: 74 QLDIDMQD 81
          ++   + D
Sbjct: 61 EISCRLDD 68


>gi|237735186|ref|ZP_04565667.1| phosphotransferase [Mollicutes bacterium D7]
 gi|229381962|gb|EEO32053.1| phosphotransferase [Coprobacillus sp. D7]
          Length = 296

 Score = 56.0 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 4/97 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +EK   ++ L +HS YS  +G  +   ++++        +AI D N++ +  E  + A  
Sbjct: 1   MEK---YIDLHMHSKYSD-DGEFTPTQLVEQCHKAGIKVMAIADHNSVKAIDEAKEAAAK 56

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
             I+ I   ++D   +            +     + L
Sbjct: 57  LNIKYIPSVEIDCTYKGINLHVLGYGVDYHHADFVTL 93


>gi|309389096|gb|ADO76976.1| PHP domain protein [Halanaerobium praevalens DSM 2228]
          Length = 575

 Score = 56.0 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS+YS  +G  ++  + +         +A+TD 
Sbjct: 346 LHLHSNYS--DGVFTIKEMAEAAKKRNYRYLAVTDH 379


>gi|218780584|ref|YP_002431902.1| ribonuclease III [Desulfatibacillum alkenivorans AK-01]
 gi|218761968|gb|ACL04434.1| Ribonuclease III [Desulfatibacillum alkenivorans AK-01]
          Length = 535

 Score = 56.0 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+ S  +G L+   IL      +  AIAITD + +   L   +     G++ + G 
Sbjct: 10 LHIHSTAS--DGTLTPQEILAAAKDLELRAIAITDHDTVDGTLNALESGIPEGLEFVPGV 67

Query: 74 QLDIDMQDNL 83
          ++  D+    
Sbjct: 68 EISADIPSPF 77


>gi|167757633|ref|ZP_02429760.1| hypothetical protein CLORAM_03183 [Clostridium ramosum DSM 1402]
 gi|167702630|gb|EDS17209.1| hypothetical protein CLORAM_03183 [Clostridium ramosum DSM 1402]
          Length = 296

 Score = 56.0 bits (133), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 4/97 (4%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +EK   ++ L +HS YS  +G  +   ++++        +AI D N++ +  E  + A  
Sbjct: 1   MEK---YIDLHMHSKYSD-DGEFTPTQLVEQCHKAGIKVMAIADHNSVKAIDEAKEAAAK 56

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
             I+ I   ++D   +            +     + L
Sbjct: 57  LNIKYIPSVEIDCTYKGINLHVLGYGVDYHHADFVTL 93


>gi|116754123|ref|YP_843241.1| phosphotransferase domain-containing protein [Methanosaeta
           thermophila PT]
 gi|116665574|gb|ABK14601.1| PHP C-terminal domain protein [Methanosaeta thermophila PT]
          Length = 219

 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 34/102 (33%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF------------SQK 61
           L  H+ +S  +G L    +L +  A    AIAITD       ++F             ++
Sbjct: 4   LHTHTVFS--DGELIPAELLRRAEASGYTAIAITDH------VDFTNVEHVVGSMLKVKE 55

Query: 62  ACAA-GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
              A  ++ IIG ++                P   +  +VLL
Sbjct: 56  MEDAYSLKVIIGVEIT-------------HVPPEKIERLVLL 84


>gi|212696922|ref|ZP_03305050.1| hypothetical protein ANHYDRO_01485 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676212|gb|EEB35819.1| hypothetical protein ANHYDRO_01485 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 368

 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 38/76 (50%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L++H+  + L+G + ++ +  ++ +    A  ITDT  L +  +   K     I+ + 
Sbjct: 288 VELEIHTKMTNLDGFVDMDELSKRLKSWGHTACGITDTETLQALPDMYDKLGKNDIKMLA 347

Query: 72  GCQLDIDMQDNLKMTN 87
           G +L +  ++   +TN
Sbjct: 348 GAELLLVDKNLRILTN 363


>gi|146306865|ref|YP_001187330.1| phosphotransferase domain-containing protein [Pseudomonas
          mendocina ymp]
 gi|145575066|gb|ABP84598.1| PHP C-terminal domain protein [Pseudomonas mendocina ymp]
          Length = 303

 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +GAL+ + ++++  A     +A+TD + L    E  + A A  +Q + G 
Sbjct: 20 LHCHSTAS--DGALAPSVLVERAHARGVRVLALTDHDTLEGLDEAQRTAAALDMQLVNGI 77

Query: 74 QLDIDMQD 81
          +L      
Sbjct: 78 ELSCTWGG 85


>gi|147919686|ref|YP_686569.1| hypothetical protein RCIX2111 [uncultured methanogenic archaeon
           RC-I]
 gi|110621965|emb|CAJ37243.1| predicted metal-dependent phosphoesterase (PHP family) [uncultured
           methanogenic archaeon RC-I]
          Length = 218

 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 13/96 (13%)

Query: 14  LQVHSSYSLL-EGALSLNNILDKIAADQQPAIAITDT---NNLFSALEFSQKAC----AA 65
           L  H   SLL +G L  + ++ +       AIAITD     NL   ++ S+KA     + 
Sbjct: 4   LHTH---SLLSDGELLPSELVRRAKVIGYEAIAITDHADYTNLERLIDASKKARVLEESY 60

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           GI  I G +L     +++      K        IV+
Sbjct: 61  GIVVISGVELTHLPPEHI--APLAKRAKELGAEIVV 94


>gi|326389412|ref|ZP_08210979.1| PHP domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325994417|gb|EGD52842.1| PHP domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 278

 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F  L +HS  S  +G  S + ++          I++TD + +    E    +    I+ I
Sbjct: 2  FADLHMHSKAS--DGTNSPSEVVRLAKEHGLSCISLTDHDTIDGLEEAIGASSRYEIEVI 59

Query: 71 IGCQLDIDMQD 81
           G + +   QD
Sbjct: 60 PGIEFNCYYQD 70


>gi|218281349|ref|ZP_03487827.1| hypothetical protein EUBIFOR_00392 [Eubacterium biforme DSM 3989]
 gi|218217441|gb|EEC90979.1| hypothetical protein EUBIFOR_00392 [Eubacterium biforme DSM 3989]
          Length = 546

 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN----NLFSALEFSQKACAAGIQP 69
           L + S+YS  +G   +  +  +   +    I+ITD N    N  +A+ FS       IQ 
Sbjct: 258 LHIRSNYSD-DGYYDVEELFKQAKDNGLEVISITDHNCARAN-AAAMRFSSL---YNIQY 312

Query: 70  IIGCQLD 76
           I G ++D
Sbjct: 313 IPGVEID 319


>gi|229592267|ref|YP_002874386.1| hypothetical protein PFLU4880 [Pseudomonas fluorescens SBW25]
 gi|229364133|emb|CAY51765.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 287

 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 2/91 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +GAL+   ++ +        +++TD + L    E  + A + G+Q + G 
Sbjct: 5   LHCHSTAS--DGALAPAVLVARAFEKGVRVLSLTDHDTLEGLDEAREAAHSLGMQLVNGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS 104
           +L                     P +  +  
Sbjct: 63  ELSCTWGGATIHVLGYGFDQNAAPLVAAIAQ 93


>gi|94310009|ref|YP_583219.1| PHP-like protein [Cupriavidus metallidurans CH34]
 gi|93353861|gb|ABF07950.1| putative metal-dependent phosphoesterase (PHP family) [Cupriavidus
           metallidurans CH34]
          Length = 322

 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 10/99 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIA---ITDTNNLFSALEFSQKACAAGIQPI 70
           L  HS  ++ +G LS +++  +  A     +A   +TD + +   +E  + A A G++ +
Sbjct: 52  LHCHS--TVSDGLLSPSDVAARAHAGG---VAFWSLTDHDEVGGQIEARRAAEALGMRYV 106

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEG 108
            G ++ +       +   G    P  P ++  L  T +G
Sbjct: 107 PGVEISVTWA-GQTVHIVGLQIDPFHPELIDGLAKTRDG 144


>gi|84494623|ref|ZP_00993742.1| hypothetical protein JNB_07494 [Janibacter sp. HTCC2649]
 gi|84384116|gb|EAP99996.1| hypothetical protein JNB_07494 [Janibacter sp. HTCC2649]
          Length = 281

 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  S   ++    A     IAITD +      E  + A   GI  + G 
Sbjct: 5   LHAHSTAS--DGTESPAELVAAAKAAGLTTIAITDHDTTAGWDEAVEAAIHEGIGLVRGI 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVL-LVS 104
           ++    +D   +   G  P P  P + + L  
Sbjct: 63  EIS-CSRDYRSIHLLGYLPDPDDPRLAIELAR 93


>gi|257453670|ref|ZP_05618958.1| PHP domain protein [Enhydrobacter aerosaccus SK60]
 gi|257448948|gb|EEV23903.1| PHP domain protein [Enhydrobacter aerosaccus SK60]
          Length = 307

 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 6  EKSPSFVHL----QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
            SP +  L      HS+ S  +G  S + ++ K        ++++D + +   LE  Q 
Sbjct: 10 SSSPIYTQLPIDMHCHSTRS--DGTFSPSEVVQKAHDKGVKVLSLSDHDTVLGILEARQT 67

Query: 62 ACAAGIQPIIGCQLD 76
          A + G+  I G ++ 
Sbjct: 68 AESLGMTLIHGVEIS 82


>gi|222479047|ref|YP_002565284.1| PHP domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222451949|gb|ACM56214.1| PHP domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 227

 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 1/90 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +G   ++ +L++ AA    A+A+TD + + +++E ++KA   G+  I+
Sbjct: 4   VELHTHSALSY-DGRDPVDLLLEQAAAVGLDALAVTDHDEIDASIEAAEKAPDYGLVGIV 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G ++       L      +          L
Sbjct: 63  GMEVTSAAGHILAFGISERVESGLPYDETL 92


>gi|269218761|ref|ZP_06162615.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Actinomyces
           sp. oral taxon 848 str. F0332]
 gi|269211872|gb|EEZ78212.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Actinomyces
           sp. oral taxon 848 str. F0332]
          Length = 299

 Score = 55.6 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  +   ++ + A      + +TD + +    E + +  A G   + G 
Sbjct: 26  LHTHSTAS--DGRSTPAELMREAARAGIDVLGLTDHDTVAGWAEAAGQVEATGTALVRGM 83

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           +L     D + +   G    P    + 
Sbjct: 84  ELS-AKIDGISVHILGYLFDPDDERLT 109


>gi|163839945|ref|YP_001624351.1| phosphotransferase domain-containing protein [Renibacterium
           salmoninarum ATCC 33209]
 gi|162953421|gb|ABY22936.1| PHP domain containing protein (TRPH) [Renibacterium salmoninarum
           ATCC 33209]
          Length = 277

 Score = 55.6 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 4/90 (4%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             HS+ S  +G      ++    A +   +A+TD ++       S  A   GI  + G +
Sbjct: 2   HTHSNVS--DGTELPAYLVQSAVAARLDVVALTDHDSTAGWPAASVAARELGIALVPGME 59

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVS 104
           +     + + +        P      LL  
Sbjct: 60  VSCRTSEGITVHLLSYLHDPQHSG--LLAE 87


>gi|307267396|ref|ZP_07548888.1| PHP domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917581|gb|EFN47863.1| PHP domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 278

 Score = 55.6 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F  L +HS  S  +G  S + ++          I++TD + +    E    +    I+ I
Sbjct: 2  FADLHMHSKAS--DGTNSPSEVVRLAKEHGLSCISLTDHDTIDGLEEAIGASSRYEIEVI 59

Query: 71 IGCQLDIDMQD 81
           G + +   QD
Sbjct: 60 PGIEFNCYYQD 70


>gi|189485629|ref|YP_001956570.1| putative metal-dependent phosphoesterase [uncultured Termite
          group 1 bacterium phylotype Rs-D17]
 gi|170287588|dbj|BAG14109.1| putative metal-dependent phosphoesterase [uncultured Termite
          group 1 bacterium phylotype Rs-D17]
          Length = 291

 Score = 55.6 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          +V + +H++YS  +G  +   +++  +  +  AI+ITD + +    E  + A   G++ +
Sbjct: 10 YVDMHIHTNYS--DGVFAPKEVVEYASKMKLAAISITDHDCVDGIDEALEIASKTGLEIV 67

Query: 71 IGCQLD 76
           G +L 
Sbjct: 68 PGIELS 73


>gi|317473298|ref|ZP_07932593.1| PHP domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316899134|gb|EFV21153.1| PHP domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 301

 Score = 55.6 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 45/142 (31%), Gaps = 32/142 (22%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+   L +GAL+++ ++ +        IA+TD N+  S           GI  I G 
Sbjct: 5   LHSHTV--LSDGALNVDQLISQAKRVGLDYIAVTDHNSTHSIPAVLALGKELGINVIPGV 62

Query: 74  QLD-------------IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
           +++                  ++K   +    +        L      Y++L+E      
Sbjct: 63  EINSVHEASDTKPHLLCYYPADVKKLQRKLDRYLEYQRQTKLAM----YEKLME------ 112

Query: 121 LLDQGKQSVRICLSWLQEIGTE 142
                     I    L E   E
Sbjct: 113 -------DYPITKEQLFEAARE 127


>gi|160901964|ref|YP_001567545.1| phosphotransferase domain-containing protein [Petrotoga mobilis
           SJ95]
 gi|160359608|gb|ABX31222.1| PHP domain protein [Petrotoga mobilis SJ95]
          Length = 570

 Score = 55.6 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 12/55 (21%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-AAGIQ 68
            VH++YS  +GA +L  +++         I ITD          S+ A  A G++
Sbjct: 340 HVHTNYS--DGANTLTEMVNGARELGYKYIGITDH---------SKSARYANGLK 383


>gi|310642752|ref|YP_003947510.1| php domain-containing protein [Paenibacillus polymyxa SC2]
 gi|309247702|gb|ADO57269.1| PHP domain-containing protein [Paenibacillus polymyxa SC2]
          Length = 289

 Score = 55.6 bits (132), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+  S  +G  S  + +          +AITD + +    E  ++    G+  + G 
Sbjct: 12 LHTHTQAS--DGMQSPADNVRWAKEKGLAGVAITDHDTVAGLEEALEEGRRIGMTVVPGV 69

Query: 74 QLD 76
          ++ 
Sbjct: 70 EIS 72


>gi|323143035|ref|ZP_08077741.1| PHP domain protein [Succinatimonas hippei YIT 12066]
 gi|322417229|gb|EFY07857.1| PHP domain protein [Succinatimonas hippei YIT 12066]
          Length = 295

 Score = 55.2 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS YS  +G  S  +++ +        +AITD N + +  E  + A    I  I G 
Sbjct: 4  LHIHSLYS-NDGEYSPTDLVRQCVKSGINVMAITDHNTVAATGEAKKSALEHNIDYIPGI 62

Query: 74 QLDIDMQD 81
          ++D   ++
Sbjct: 63 EIDCTFKN 70


>gi|20808251|ref|NP_623422.1| PHP family histidinol phosphatase/hydrolase [Thermoanaerobacter
           tengcongensis MB4]
 gi|254479439|ref|ZP_05092768.1| putative PHP domain protein [Carboxydibrachium pacificum DSM 12653]
 gi|20516849|gb|AAM25026.1| Histidinol phosphatase and related hydrolases of the PHP family
           [Thermoanaerobacter tengcongensis MB4]
 gi|214034624|gb|EEB75369.1| putative PHP domain protein [Carboxydibrachium pacificum DSM 12653]
          Length = 243

 Score = 55.2 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 25/110 (22%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSA--LEFSQKACAA---- 65
             H+ YS  +G   +   + K       AIAITD       +     +F +K        
Sbjct: 8   HTHTIYSHGKGT--IEENVKKAVELGLKAIAITDHGPAHVFYGMRKKDF-KKMRDEIDRL 64

Query: 66  -----GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ 110
                 I+ ++G + ++   +           +      +LLV    GY 
Sbjct: 65  REKYSQIKILMGVEANLISIEGDIDVPDELLKYLD----ILLV----GYH 106


>gi|315282171|ref|ZP_07870637.1| DNA polymerase III PolC-type [Listeria marthii FSL S4-120]
 gi|313614183|gb|EFR87861.1| DNA polymerase III PolC-type [Listeria marthii FSL S4-120]
          Length = 80

 Score = 55.2 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
           +F +  + +     AI  +GT  A+ I+ A  +  F S ED   R    K+++ +++ + 
Sbjct: 7   EFLIDGDSLIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQR---GKVSKTIIQYMD 63

Query: 887 FAGALDCF 894
             G L+  
Sbjct: 64  DQGCLEGL 71


>gi|251779550|ref|ZP_04822470.1| PHP domain protein [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
 gi|243083865|gb|EES49755.1| PHP domain protein [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
          Length = 277

 Score = 55.2 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
           +H+  S  +G LS   ++ +   +    +AITD + L       +     G+  I G +
Sbjct: 7  HIHT--SSSDGLLSPTEVVKRAKENSVSYLAITDHDTLSGLDSGIKCGKELGVTIIPGIE 64

Query: 75 LD 76
          L 
Sbjct: 65 LS 66


>gi|319790038|ref|YP_004151671.1| PHP domain protein [Thermovibrio ammonificans HB-1]
 gi|317114540|gb|ADU97030.1| PHP domain protein [Thermovibrio ammonificans HB-1]
          Length = 575

 Score = 55.2 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA ++ + + +        IAI+D 
Sbjct: 339 LHLHSTWS--DGASTIEDYVKRALEMGYSYIAISDH 372


>gi|302558566|ref|ZP_07310908.1| phosphoesterase PHP, N [Streptomyces griseoflavus Tu4000]
 gi|302476184|gb|EFL39277.1| phosphoesterase PHP, N [Streptomyces griseoflavus Tu4000]
          Length = 285

 Score = 55.2 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++ K AA     IA+TD +      E    A   G+  + G 
Sbjct: 5  LHTHSTAS--DGTDTPAELVRKAAAAGLDVIALTDHDTTRGHAEAL-AALPEGLTLVPGA 61

Query: 74 QLDIDMQD 81
          +L   +  
Sbjct: 62 ELSCRLDG 69


>gi|111022961|ref|YP_705933.1| hypothetical protein RHA1_ro05998 [Rhodococcus jostii RHA1]
 gi|110822491|gb|ABG97775.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 284

 Score = 55.2 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 11/89 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  S  +++    A     +AITD +      E    A  AG+  + G 
Sbjct: 5   LHTHSTAS--DGTDSPADLVRAAGAAGLDIVAITDHDTTAGWAEA-VAALPAGLALVRGM 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++  +         +G+   P    ++  
Sbjct: 62  EMSCE--------GRGEDGRPVAVHLLAY 82


>gi|71066252|ref|YP_264979.1| PHP family metal-dependent phosphoesterase [Psychrobacter
          arcticus 273-4]
 gi|71039237|gb|AAZ19545.1| possible metal-dependent phosphoesterases (PHP family)
          [Psychrobacter arcticus 273-4]
          Length = 293

 Score = 55.2 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++ +        +A+TD + L    E    A A  IQ I G 
Sbjct: 5  LHCHSTCS--DGTYAPAEVVQRAHTAGINVLALTDHDTLLGIDEARAAADACNIQLINGV 62

Query: 74 QLD 76
          ++ 
Sbjct: 63 EIS 65


>gi|258591353|emb|CBE67652.1| PHP C-terminal domain protein [NC10 bacterium 'Dutch sediment']
          Length = 290

 Score = 55.2 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 9/99 (9%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H+  S  +GAL    ++          +A+TD +++    E  + A    I+ + G 
Sbjct: 7   LHLHTKAS--DGALQPAELVKAADRIGIRVMAVTDHDSVNGIAEAQEAASDLAIEVMSGI 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
           +L     D  ++   G       PS+       +  +RL
Sbjct: 65  ELS-ASLDGDEIHILGYLLDADDPSL------QKALRRL 96


>gi|284166550|ref|YP_003404829.1| PHP domain protein [Haloterrigena turkmenica DSM 5511]
 gi|284016205|gb|ADB62156.1| PHP domain protein [Haloterrigena turkmenica DSM 5511]
          Length = 244

 Score = 55.2 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 17/99 (17%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP----- 69
            VH++ S  +G  +   ++D         IA+TD + +  A E ++ A      P     
Sbjct: 22  HVHTAASY-DGTTTPAELVDAARRAGLDGIAVTDHDTIDGAREVARLA------PDDLLV 74

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           I+GC++      +L        P P  P    L  TA  
Sbjct: 75  IVGCEVSTADG-HLLALGVDAAPEPGRP----LARTARA 108


>gi|304396085|ref|ZP_07377967.1| PHP domain protein [Pantoea sp. aB]
 gi|304356454|gb|EFM20819.1| PHP domain protein [Pantoea sp. aB]
          Length = 294

 Score = 55.2 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 4/92 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H+  S  +G L+   ++ +    +   +AITD +++    E  Q A      I+ + 
Sbjct: 12  LHSHTRAS--DGFLTPAALVQRAVEMRVGVLAITDHDSVAGVEEAQQTALDQDLPIKVLA 69

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           G ++    +++                +  L 
Sbjct: 70  GAEISTLWENHEIHIVGLNIDIHHPAMVTFLA 101


>gi|295099978|emb|CBK89067.1| Predicted metal-dependent phosphoesterases (PHP family)
           [Eubacterium cylindroides T2-87]
          Length = 215

 Score = 55.2 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 12/132 (9%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS YS  +G  S   ++D         I++TD + +    E ++     GI+ I G 
Sbjct: 6   LHMHSMYS-GDGQFSPKELIDIADKKGLKIISLTDHDAVKGVKEITELGKEKGIRVIPGI 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD----QGKQSV 129
           +    ++ N                 V L        RL +L+   + L     Q K  +
Sbjct: 65  ECSTILEGNDVHLLGYGIDIENSY-FVNLAD------RLNKLMYDAFYLRVEKIQNKYGI 117

Query: 130 RICLSWLQEIGT 141
            +    L E   
Sbjct: 118 ELDADELIEASH 129


>gi|315923983|ref|ZP_07920211.1| PHP family histidinol phosphatase/hydrolase [Pseudoramibacter
          alactolyticus ATCC 23263]
 gi|315622823|gb|EFV02776.1| PHP family histidinol phosphatase/hydrolase [Pseudoramibacter
          alactolyticus ATCC 23263]
          Length = 256

 Score = 55.2 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 22/92 (23%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN-N--LFSA-LEFSQKACA----A 65
          L  H+++S   G  ++  ++D+  A +  AIAI+D   +  L+       +K  A     
Sbjct: 7  LHTHTTFS--HGRNTIEEMVDRARALELAAIAISDHGRSHPLYGVKPRHFRKMRAIIDDL 64

Query: 66 GIQP------------IIGCQLDIDMQDNLKM 85
           ++             IIG    ID+ +  + 
Sbjct: 65 NVKYDDIQIYLSVEANIIGADGTIDIGEEERR 96


>gi|160893296|ref|ZP_02074083.1| hypothetical protein CLOL250_00845 [Clostridium sp. L2-50]
 gi|156864988|gb|EDO58419.1| hypothetical protein CLOL250_00845 [Clostridium sp. L2-50]
          Length = 290

 Score = 55.2 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 67/231 (29%), Gaps = 49/231 (21%)

Query: 10  SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
            F+ L VH++ S  +G+ + + +          A+AITD + +    E  +       QP
Sbjct: 2   RFIDLHVHTTAS--DGSFTPSEVCQMALDKGLAALAITDHDTVDGVPEAIRFMENH--QP 57

Query: 70  ------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS---------TAEG 108
                       I G +L  +              +       LL               
Sbjct: 58  APDTQDSLPMELIPGIELSCNYGSREIHILGFYMDYTNPG---LLAELNALKDARFNRN- 113

Query: 109 YQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE 168
              + +L    +  D     + + +  LQE   + +I     +   I+     N  Q  +
Sbjct: 114 -VEMCKL----FQRDG----IDMTIEKLQEGNPDTVITRAHFARVLIEDGIVKNKDQAFK 164

Query: 169 KRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLF 219
           K L         R Y+              + + +   +    V  +  L+
Sbjct: 165 KYLGE-----KCRYYL------PKPEVTCERALSIINQYGKCAVLAHPLLY 204


>gi|330989192|gb|EGH87295.1| phosphotransferase domain-containing protein [Pseudomonas
          syringae pv. lachrymans str. M301315]
          Length = 287

 Score = 55.2 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +GALS   ++ +   +    +++TD + L    E    A + G+Q + G 
Sbjct: 5  LHCHSTAS--DGALSSTALVARAHENGVRVLSLTDHDTLEGLEEARTAAHSLGMQLVNGV 62

Query: 74 QLDIDMQD 81
          +L      
Sbjct: 63 ELSCTWGG 70


>gi|325957827|ref|YP_004289293.1| PHP domain-containing protein [Methanobacterium sp. AL-21]
 gi|325329259|gb|ADZ08321.1| PHP domain protein [Methanobacterium sp. AL-21]
          Length = 216

 Score = 55.2 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
           +HS+YS  +   S  +I+ +       AIA+ D N 
Sbjct: 6  HIHSTYS-SDSTASPRDIIKRAKKIGLDAIAVADHNT 41


>gi|170692322|ref|ZP_02883485.1| putative DNA uptake protein, ComEA-like protein [Burkholderia
           graminis C4D1M]
 gi|170142752|gb|EDT10917.1| putative DNA uptake protein, ComEA-like protein [Burkholderia
           graminis C4D1M]
          Length = 217

 Score = 55.2 bits (131), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KG+G   A+ I+E    + PF   +D  +RV  K +  + + +L  AG
Sbjct: 33  ALESVKGIGPAHAKAIIEERSKNGPFKDADDLAARV--KGIGSKSVVNLEAAG 83


>gi|302542714|ref|ZP_07295056.1| PHP domain N- region family protein [Streptomyces hygroscopicus
          ATCC 53653]
 gi|302460332|gb|EFL23425.1| PHP domain N- region family protein [Streptomyces himastatinicus
          ATCC 53653]
          Length = 291

 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA---GIQPI 70
          L  HS+ S  +G  +   ++   AA     +A+TD + +       ++A  A   G+  +
Sbjct: 5  LHTHSTAS--DGTDTPAELVRNAAAAGLDVVALTDHDTVGG----YEEAAGALPEGLTLV 58

Query: 71 IGCQLDIDMQD 81
           G +L   +  
Sbjct: 59 TGAELSCRLGG 69


>gi|167746151|ref|ZP_02418278.1| hypothetical protein ANACAC_00847 [Anaerostipes caccae DSM 14662]
 gi|167654666|gb|EDR98795.1| hypothetical protein ANACAC_00847 [Anaerostipes caccae DSM 14662]
          Length = 301

 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 13/89 (14%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+   L +GAL+++ ++ +        IA+TD N+  S           GI  I G 
Sbjct: 5   LHSHTV--LSDGALNVDQLISQAKRVGLDYIAVTDHNSTHSIPAVLALGKELGINVIPGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           +++                  T P ++  
Sbjct: 63  EIN-----------SVHEASDTKPHLLCY 80


>gi|11498116|ref|NP_069341.1| hypothetical protein AF0505 [Archaeoglobus fulgidus DSM 4304]
 gi|2650121|gb|AAB90733.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 208

 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQP 69
            L VHSS+S  +G   +  IL+     +   IAITD + +  +LE           ++ 
Sbjct: 4  AELHVHSSFS--DGRDGVRKILEAAVEKKLEVIAITDHDTVQGSLEAIDIVKEEHLPLKV 61

Query: 70 IIGCQLD 76
          + GC++ 
Sbjct: 62 LPGCEVT 68


>gi|89094113|ref|ZP_01167056.1| hypothetical protein MED92_16260 [Oceanospirillum sp. MED92]
 gi|89081588|gb|EAR60817.1| hypothetical protein MED92_16260 [Oceanospirillum sp. MED92]
          Length = 277

 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  HS+ S  +GAL+   +L++  +     +A+TD + +     +E        GI+ I 
Sbjct: 8  LHCHSTAS--DGALAPLELLERARSRDIKILALTDHDTVQGVREIERY---SDEGIKIIP 62

Query: 72 GCQLD 76
          G +L 
Sbjct: 63 GTELT 67


>gi|313623920|gb|EFR94028.1| DNA polymerase III PolC-type [Listeria innocua FSL J1-023]
          Length = 81

 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 827 DFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
           +F +  + +     AI  +GT  A+ I+ A  D  F S ED   R    K+++ +++ + 
Sbjct: 8   EFIIDGDSLIPPFNAIPSLGTNVAKQIVAAREDGEFLSKEDLQQR---GKVSKTIIQYMD 64

Query: 887 FAGALDCF 894
             G L+  
Sbjct: 65  DQGCLEGL 72


>gi|291279852|ref|YP_003496687.1| hypothetical protein DEFDS_1471 [Deferribacter desulfuricans SSM1]
 gi|290754554|dbj|BAI80931.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 277

 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 35/129 (27%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+YS  +G L+ + ++          +A+TD + +     F        I  I G 
Sbjct: 4   LHTHSTYS--DGTLAPDELIRLAECKNIKMLALTDHDTVNGIDNFLS--VDTDIIKIPGV 59

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++ ID               P    +V L                  L++   + +R  L
Sbjct: 60  EISIDYN-------------PGTFHLVGL------------------LINHKNEKLRNTL 88

Query: 134 SWLQEIGTE 142
             L E   E
Sbjct: 89  DKLIEYRKE 97


>gi|54309648|ref|YP_130668.1| putative metal-dependent phosphoesterase [Photobacterium profundum
           SS9]
 gi|46914086|emb|CAG20866.1| putative metal-dependent phosphoesterase [Photobacterium profundum
           SS9]
          Length = 297

 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 13/97 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------CAAGI 67
           L  H++ S  +G LS   +L +    +  A+AITD +     +E    A          I
Sbjct: 5   LHSHTTAS--DGCLSPEELLKRAVERRVDALAITDHDT----VEALLLAQRIIDEQELPI 58

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS 104
             I G ++   +  N  +   G    P  P++  L+ 
Sbjct: 59  TLIKGIEIS-TLWSNFDIHVVGLNIDPEHPALTTLIQ 94


>gi|187934032|ref|YP_001887030.1| metal-dependent phosphoesterase [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722185|gb|ACD23406.1| PHP domain protein [Clostridium botulinum B str. Eklund 17B]
          Length = 277

 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 72/201 (35%), Gaps = 29/201 (14%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            VH+S S  +G LS   ++++   +    +AITD + L            AGI+   G +
Sbjct: 7   HVHTSCS--DGLLSPIEVVNRAKQNSVSYLAITDHDTLSGL--------DAGIK--CGNE 54

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
           LD+ +   ++++ Q          ++        Y    +L++   L       +     
Sbjct: 55  LDVKIIPGIELSTQCNN---ESIHLLGFFKDNS-YNN-PKLINE--LDKIKNHRIIRAKE 107

Query: 135 WLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG---DRLYVNLQRHRG 191
            ++++ TE  I++        D         +A   +       G   D  Y+  Q   G
Sbjct: 108 IIKKLNTEFNIII------NFDDVLSNGKDTIARPHIARAIINAGYPYDNEYI-FQNFIG 160

Query: 192 YDRYRESQVVQLAYTHELPLV 212
            D       ++L+    + L+
Sbjct: 161 KDCRAYVPTLKLSTEDGVSLL 181


>gi|325963997|ref|YP_004241903.1| metal-dependent phosphoesterase, PHP family [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470084|gb|ADX73769.1| putative metal-dependent phosphoesterase, PHP family [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 282

 Score = 54.8 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G     +++   A      +A+TD ++     E +  A   GI  + G 
Sbjct: 5   LHAHSNVS--DGTEKPADVMASAARAGLDVVALTDHDSTAGWDEAAAAALEQGIALVPGM 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           ++    ++ + +        P    ++
Sbjct: 63  EVSCRTEEGISVHLLSYLHDPNHAGLL 89


>gi|326384545|ref|ZP_08206224.1| PHP domain-containing protein [Gordonia neofelifaecis NRRL
          B-59395]
 gi|326196679|gb|EGD53874.1| PHP domain-containing protein [Gordonia neofelifaecis NRRL
          B-59395]
          Length = 288

 Score = 54.8 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 12/83 (14%)

Query: 1  LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          +   +        L  H+++S  +G  S   +L          IA+TD +      +  +
Sbjct: 1  MALPMTAD-----LHTHTAFS--DGTDSPAQLLAAAREAGLTTIALTDHDT-AGGWD--E 50

Query: 61 KACAA--GIQPIIGCQLDIDMQD 81
           A     G++ + G +      D
Sbjct: 51 TAAQVPTGMRVLPGAEFSTKHPD 73


>gi|152981327|ref|YP_001352967.1| hypothetical protein mma_1277 [Janthinobacterium sp. Marseille]
 gi|151281404|gb|ABR89814.1| Uncharacterized conserved protein [Janthinobacterium sp.
          Marseille]
          Length = 278

 Score = 54.8 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS++S  +G L+   +  +  A+     A+TD +
Sbjct: 6  LHCHSNFS--DGTLTPTALAARAKANGVDVWAMTDHD 40


>gi|157964617|ref|YP_001499441.1| DNA polymerase III alpha chain [Rickettsia massiliae MTU5]
 gi|157844393|gb|ABV84894.1| DNA polymerase III alpha chain [Rickettsia massiliae MTU5]
          Length = 2794

 Score = 54.8 bits (130), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 3/113 (2%)

Query: 335 QDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITD 394
           ++Y++RL  ELN+I +  ++  FLI A+ ++  +  +I      GS   S+ A AL I  
Sbjct: 525 EEYQKRLTEELNIIKQFDYAENFLIAANIVKICQYFDIRY-QLIGSANSSLVAKALNIHT 583

Query: 395 IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQII 447
           I+P+   LLFE FL+ DR   PDFD     ++R  +  Y+       R   ++
Sbjct: 584 INPIEHQLLFEVFLSDDR--QPDFDFYIDSEQRHIICNYLITHAYQGRAGWMM 634


>gi|167039309|ref|YP_001662294.1| phosphotransferase domain-containing protein [Thermoanaerobacter
           sp. X514]
 gi|300913949|ref|ZP_07131266.1| PHP domain protein [Thermoanaerobacter sp. X561]
 gi|307725366|ref|YP_003905117.1| PHP domain-containing protein [Thermoanaerobacter sp. X513]
 gi|166853549|gb|ABY91958.1| PHP C-terminal domain protein [Thermoanaerobacter sp. X514]
 gi|300890634|gb|EFK85779.1| PHP domain protein [Thermoanaerobacter sp. X561]
 gi|307582427|gb|ADN55826.1| PHP domain protein [Thermoanaerobacter sp. X513]
          Length = 570

 Score = 54.8 bits (130), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH++YS  +GA +L  +++         I ITD 
Sbjct: 340 HVHTTYS--DGANTLVEMVEAARKLGYKYIGITDH 372


>gi|256752187|ref|ZP_05493052.1| PHP domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748915|gb|EEU61954.1| PHP domain protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 576

 Score = 54.8 bits (130), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH++YS  +GA +L  +++         I ITD 
Sbjct: 340 HVHTTYS--DGANTLVEMVEAARKLGYKYIGITDH 372


>gi|167036645|ref|YP_001664223.1| phosphotransferase domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115072|ref|YP_004185231.1| PHP domain-containing protein [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166855479|gb|ABY93887.1| PHP C-terminal domain protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319928163|gb|ADV78848.1| PHP domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 576

 Score = 54.8 bits (130), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH++YS  +GA +L  +++         I ITD 
Sbjct: 340 HVHTTYS--DGANTLVEMVEAARKLGYKYIGITDH 372


>gi|268323179|emb|CBH36767.1| conserved hypothetical protein containing PHP domain [uncultured
           archaeon]
          Length = 220

 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 16/89 (17%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L VH++YS  +G  S+  I+    A +   IAI D + +  +      A           
Sbjct: 11  LHVHTNYS-HDGHDSVEKIIASAIAQKLDGIAICDHDTMDGSF----AARE--------- 56

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
              +       +   G     +   +++L
Sbjct: 57  --YVADNHLDLIIIPGMEVTTSKGHLLVL 83


>gi|313672802|ref|YP_004050913.1| php domain protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939558|gb|ADR18750.1| PHP domain protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 278

 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS YS  +G+L++  IL          +AITD + +     F      + +Q + G 
Sbjct: 4  LHCHSRYS--DGSLTIEEILKLAEKSDIDVLAITDHDTVDGIEHFVNT--DSNVQKVAGV 59

Query: 74 QLDIDMQDN 82
          ++ +D    
Sbjct: 60 EISVDWDKG 68


>gi|288931666|ref|YP_003435726.1| PHP domain protein [Ferroglobus placidus DSM 10642]
 gi|288893914|gb|ADC65451.1| PHP domain protein [Ferroglobus placidus DSM 10642]
          Length = 212

 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 9/70 (12%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT---NNLFSALE----FSQKACAAG 66
          L VHS +S  +G L  + I  ++ +    A+ I D    +NL S +E    F+++    G
Sbjct: 4  LHVHSIFS--DGELIPSEIARRLESLDYKAVCIADHADLSNLSSVIEKLWKFAEEREEYG 61

Query: 67 IQPIIGCQLD 76
          ++ ++G ++ 
Sbjct: 62 VKVLVGVEIT 71


>gi|297526076|ref|YP_003668100.1| PHP domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297254992|gb|ADI31201.1| PHP domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 222

 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC----AAGIQP- 69
           +HS+YS  +G  S   I+          I+ITD N+   ++  S+ A       G Q  
Sbjct: 2  HIHSTYS--DGRASPKEIILTAIYKGLNIISITDHNSFQGSVAASKLAKDLVREYGEQLL 59

Query: 70 -IIGCQLDIDMQD 81
           IIG ++  D  D
Sbjct: 60 VIIGNEVRSDKGD 72


>gi|257068312|ref|YP_003154567.1| putative metal-dependent phosphoesterase, PHP family
          [Brachybacterium faecium DSM 4810]
 gi|256559130|gb|ACU84977.1| predicted metal-dependent phosphoesterase, PHP family
          [Brachybacterium faecium DSM 4810]
          Length = 294

 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          L  HS+ S  +G  S+  +  +        +A+TD + +  
Sbjct: 15 LHAHSACS--DGTTSVEELFAQARTAGLDVLALTDHDTVAG 53


>gi|288556832|ref|YP_003428767.1| hypothetical protein BpOF4_19180 [Bacillus pseudofirmus OF4]
 gi|288547992|gb|ADC51875.1| hypothetical protein BpOF4_19180 [Bacillus pseudofirmus OF4]
          Length = 288

 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+ S  +G  +  +++DK        +A+TD + +       +   A G+  I G 
Sbjct: 9  LHMHSTAS--DGNYTPKDLMDKCKEAGLEIVALTDHDTVQGVEAAIEAGQALGLAVIPGI 66

Query: 74 QLD 76
          +L 
Sbjct: 67 ELS 69


>gi|147677642|ref|YP_001211857.1| metal-dependent phosphoesterases [Pelotomaculum thermopropionicum
          SI]
 gi|146273739|dbj|BAF59488.1| predicted metal-dependent phosphoesterases [Pelotomaculum
          thermopropionicum SI]
          Length = 274

 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH++ S  +G  S   ++ K  A    AIAITD + L       +      ++ + G 
Sbjct: 5  LHVHTTAS--DGTDSPAEVVLKAKAIGLSAIAITDHDTLEGVEPAFEAGQLEKLEIVPGI 62

Query: 74 QL 75
          +L
Sbjct: 63 EL 64


>gi|20808870|ref|NP_624041.1| family X DNA polymerase IV [Thermoanaerobacter tengcongensis MB4]
 gi|20517526|gb|AAM25645.1| DNA polymerase IV (family X) [Thermoanaerobacter tengcongensis MB4]
          Length = 570

 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH++YS  +G  SL +++ K        IAITD 
Sbjct: 340 HVHTTYS--DGRNSLEDMVRKARDLGYKYIAITDH 372


>gi|302389951|ref|YP_003825772.1| PHP domain protein [Thermosediminibacter oceani DSM 16646]
 gi|302200579|gb|ADL08149.1| PHP domain protein [Thermosediminibacter oceani DSM 16646]
          Length = 572

 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS++S  +G  S+  I  +        +AITD 
Sbjct: 341 LHVHSNWS--DGINSIEEIAIRAREMGYEYVAITDH 374


>gi|302536726|ref|ZP_07289068.1| PHP domain-containing protein [Streptomyces sp. C]
 gi|302445621|gb|EFL17437.1| PHP domain-containing protein [Streptomyces sp. C]
          Length = 288

 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++   AA     +A+TD + +    E    A  AG+  + G 
Sbjct: 5  LHAHSTAS--DGTDTPAELVRNAAAAGLDVVALTDHDTVGGYAEAI-AALPAGLTLVTGA 61

Query: 74 QLDIDMQD 81
          +L   +  
Sbjct: 62 ELSCRLDG 69


>gi|109899137|ref|YP_662392.1| PHP-like [Pseudoalteromonas atlantica T6c]
 gi|109701418|gb|ABG41338.1| PHP-like protein [Pseudoalteromonas atlantica T6c]
          Length = 288

 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H+ YS  +G LS   ++D+    Q   +AITD + + +       Q      +  + 
Sbjct: 5  LHCHTYYS--DGQLSPVELVDRANNMQVDVLAITDHDTVQALDEARAHQAKQKRKMHIVN 62

Query: 72 GCQLD 76
          G +L 
Sbjct: 63 GIELS 67


>gi|194097703|ref|YP_002000744.1| hypothetical protein NGK_0119 [Neisseria gonorrhoeae NCCP11945]
 gi|240015838|ref|ZP_04722378.1| hypothetical protein NgonFA_01507 [Neisseria gonorrhoeae FA6140]
 gi|240079978|ref|ZP_04724521.1| hypothetical protein NgonF_01490 [Neisseria gonorrhoeae FA19]
 gi|240114930|ref|ZP_04728992.1| hypothetical protein NgonPID1_01527 [Neisseria gonorrhoeae PID18]
 gi|240117218|ref|ZP_04731280.1| hypothetical protein NgonPID_01944 [Neisseria gonorrhoeae PID1]
 gi|240122768|ref|ZP_04735724.1| hypothetical protein NgonP_02275 [Neisseria gonorrhoeae PID332]
 gi|240124961|ref|ZP_04737847.1| hypothetical protein NgonSK_01839 [Neisseria gonorrhoeae SK-92-679]
 gi|268596118|ref|ZP_06130285.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268600590|ref|ZP_06134757.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268602907|ref|ZP_06137074.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268681374|ref|ZP_06148236.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268683542|ref|ZP_06150404.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|193932993|gb|ACF28817.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|268549906|gb|EEZ44925.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268584721|gb|EEZ49397.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268587038|gb|EEZ51714.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268621658|gb|EEZ54058.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268623826|gb|EEZ56226.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
          Length = 278

 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G L    ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHS--TVSDGMLPPAEVVRLAHQNGCTLLALTDHDHTGGISEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLADVRKGRLKRL 101


>gi|59800542|ref|YP_207254.1| hypothetical protein NGO0081 [Neisseria gonorrhoeae FA 1090]
 gi|239998213|ref|ZP_04718137.1| hypothetical protein Ngon3_01837 [Neisseria gonorrhoeae 35/02]
 gi|240013396|ref|ZP_04720309.1| hypothetical protein NgonD_01889 [Neisseria gonorrhoeae DGI18]
 gi|240112185|ref|ZP_04726675.1| hypothetical protein NgonM_01139 [Neisseria gonorrhoeae MS11]
 gi|240120467|ref|ZP_04733429.1| hypothetical protein NgonPI_01574 [Neisseria gonorrhoeae PID24-1]
 gi|254492991|ref|ZP_05106162.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|260441255|ref|ZP_05795071.1| hypothetical protein NgonDG_09263 [Neisseria gonorrhoeae DGI2]
 gi|268594068|ref|ZP_06128235.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268598245|ref|ZP_06132412.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|291044600|ref|ZP_06570309.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|59717437|gb|AAW88842.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|226512031|gb|EEH61376.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268547457|gb|EEZ42875.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268582376|gb|EEZ47052.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|291011494|gb|EFE03490.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|317163501|gb|ADV07042.1| hypothetical protein NGTW08_0064 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 278

 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G L    ++     +    +A+TD ++     E   +A   G++ I G 
Sbjct: 4   LHCHS--TVSDGMLPPAEVVRLAHQNGCTLLALTDHDHTGGISEARAEADRLGLRLINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDEQDENLQNLLADVRKGRLKRL 101


>gi|70728988|ref|YP_258723.1| phosphotransferase domain-containing protein [Pseudomonas
          fluorescens Pf-5]
 gi|68343287|gb|AAY90893.1| PHP domain protein [Pseudomonas fluorescens Pf-5]
          Length = 292

 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +GAL+   ++ +        +++TD + L    E  Q A   G+Q + G 
Sbjct: 11 LHCHSTAS--DGALAPAVLVARAYERGVRILSLTDHDTLEGLDEARQAAQQLGMQLVNGV 68

Query: 74 QLDIDMQD 81
          +L      
Sbjct: 69 ELSCTWGG 76


>gi|304438467|ref|ZP_07398407.1| PHP domain protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304368550|gb|EFM22235.1| PHP domain protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 276

 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          L +H+++S  +G  +   I++   A     I+ITD +++    E  +
Sbjct: 5  LHIHTTFS--DGRNTPEEIMEAAKAAGLRYISITDHDSVEGVTELYE 49


>gi|303240430|ref|ZP_07326947.1| PHP domain protein [Acetivibrio cellulolyticus CD2]
 gi|302591995|gb|EFL61726.1| PHP domain protein [Acetivibrio cellulolyticus CD2]
          Length = 569

 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS+YS  +GA ++  ++          + ITD 
Sbjct: 339 LHVHSTYS--DGANTIEELVKFSMNKGYTYLGITDH 372


>gi|169831315|ref|YP_001717297.1| phosphotransferase domain-containing protein [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638159|gb|ACA59665.1| PHP C-terminal domain protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 578

 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 22/102 (21%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN-------NLF--------SALEFS 59
            VHS YS  +GA +L +I  +        + + D +        L         +A+   
Sbjct: 341 HVHSVYS--DGAGTLEDIAAEALRLGLEWVGVCDHSHSLKIARGLSIRDLRQKIAAVRAF 398

Query: 60  QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
            +  + G++ + G +++ID    L   ++          +VL
Sbjct: 399 NQ-QSTGVKLLAGAEVEIDAHGRLDYPDEVLAELD----LVL 435


>gi|118595136|ref|ZP_01552483.1| PHP-like protein [Methylophilales bacterium HTCC2181]
 gi|118440914|gb|EAV47541.1| PHP-like protein [Methylophilales bacterium HTCC2181]
          Length = 292

 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  ++ +G  S   ++    +     +A+TD +++    +  ++A A G+  I G 
Sbjct: 8  LHCHS--TISDGLFSPTELVKYAHSKGVQVLALTDHDDIDGLPQAREQASALGMVFINGV 65

Query: 74 QLDIDMQDN 82
          ++ +  Q  
Sbjct: 66 EISVTWQKR 74


>gi|147669993|ref|YP_001214811.1| phosphotransferase domain-containing protein [Dehalococcoides sp.
          BAV1]
 gi|146270941|gb|ABQ17933.1| PHP C-terminal domain protein [Dehalococcoides sp. BAV1]
          Length = 287

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-GIQPIIG 72
          L +H+  ++ +G  S  NI+ K A      IAI D +NL       Q A     ++ I G
Sbjct: 7  LHIHT--TVSDGVHSPENIIAKAAKVHMEYIAICDHDNLDGIGLAIQTARKYPKLRVIPG 64

Query: 73 CQLDIDMQDN 82
           ++  D    
Sbjct: 65 VEISTDYSGG 74


>gi|226365467|ref|YP_002783250.1| hypothetical protein ROP_60580 [Rhodococcus opacus B4]
 gi|226243957|dbj|BAH54305.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 284

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 11/89 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  S  +++    A     +AITD +      E    A   G+  + G 
Sbjct: 5   LHTHSTAS--DGTDSPADLVRAAGAAGLDIVAITDHDTTAGWAEA-VAALPKGLALVRGM 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++  +         +G+   P    ++  
Sbjct: 62  EMSCE--------GRGEDGRPVAVHLLAY 82


>gi|307729567|ref|YP_003906791.1| putative DNA uptake protein, ComEA-like protein [Burkholderia sp.
           CCGE1003]
 gi|307584102|gb|ADN57500.1| putative DNA uptake protein, ComEA-like protein [Burkholderia sp.
           CCGE1003]
          Length = 227

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KG+G   A+ I+E    + PF S +D  +RV  K +  + + +L  AG
Sbjct: 33  ALESVKGIGPAHAKAIIEERTKNGPFRSADDLAARV--KGIGNKSVINLEAAG 83


>gi|295676451|ref|YP_003604975.1| putative DNA uptake protein, ComEA-like protein [Burkholderia sp.
           CCGE1002]
 gi|295436294|gb|ADG15464.1| putative DNA uptake protein, ComEA-like protein [Burkholderia sp.
           CCGE1002]
          Length = 190

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KG+G   A+ I++    + PF + +D  +RV  K + ++ +E+L  AG
Sbjct: 33  ALESVKGIGPVHAKAILDERAKNGPFKNADDLAARV--KGIGQKSVENLEAAG 83


>gi|317470626|ref|ZP_07930012.1| PHP domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901917|gb|EFV23845.1| PHP domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 277

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 80/274 (29%), Gaps = 59/274 (21%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA-----------------L 56
           L +HS  S  +G L    +L         A A+TD + +                    +
Sbjct: 4   LHLHSDAS--DGTLKPAEVLRAAKEKGLYAFALTDHDTVAGIPPILHSGELTGIHFMPGI 61

Query: 57  EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
           E S +A    I  I+G  +DI  Q+ L      +                   + L    
Sbjct: 62  ELSCEAEKHEIH-ILGYHIDICNQNLLNTLEGLRRGRRQ--------------RNLS--- 103

Query: 117 SRMYLLDQGKQS-VRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFK 175
               ++++ ++  + + L  L     + +I     +     R          +++   FK
Sbjct: 104 ----MIEKFREDGIPMTLEKLLHGNEQTVI-----TRAHFARVLIEEGYCANKEQA--FK 152

Query: 176 KLFGD--RLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFL--SEEDYEAHDVL 231
           K  GD  R Y+          +  +  V+L        V  +   +   + E  E    L
Sbjct: 153 KYVGDGCRYYI------PKPYFAPADAVRLIKDAGGTAVLAHPFQYHLSNAELEELIREL 206

Query: 232 MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFS 265
           ++     +              L+       + +
Sbjct: 207 ISFGLGGIEVYHSSHHHGQTVKLRQWCRKYGMLA 240


>gi|317055173|ref|YP_004103640.1| PHP domain-containing protein [Ruminococcus albus 7]
 gi|315447442|gb|ADU21006.1| PHP domain protein [Ruminococcus albus 7]
          Length = 307

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 2/86 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+  +L +G+L +  ++ +        +AITD + L S           G+  I   
Sbjct: 5  LHCHT--TLSDGSLGIEEVIAQAKRMGLDFLAITDHDTLSSTSRAQILGERYGVNIIQAV 62

Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSI 99
          +L    +   +  +           +
Sbjct: 63 ELSAWDKKRNEKVHILCYAPQKPNRL 88


>gi|91793801|ref|YP_563452.1| PHP-like protein [Shewanella denitrificans OS217]
 gi|91715803|gb|ABE55729.1| PHP-like protein [Shewanella denitrificans OS217]
          Length = 286

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--KACAAGIQPII 71
          L  H++ S  +G LS  +++ +         AITD + L    E  Q   + A  ++ I 
Sbjct: 10 LHSHTTAS--DGQLSPTDLVARALDKGVQMFAITDHDTLAGLDEAHQFNNSQAQPLKLID 67

Query: 72 GCQLD 76
          G ++ 
Sbjct: 68 GVEIS 72


>gi|20090153|ref|NP_616228.1| hypothetical protein MA1289 [Methanosarcina acetivorans C2A]
 gi|19915137|gb|AAM04708.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 218

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 11/95 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT---NNLFSALEFSQKAC----AAG 66
           L  H+ +S  +G L  + ++ +       AIA+TD     NL   L+ ++KA        
Sbjct: 7   LHTHTIFS--DGELLPSELVRRAVIHGYEAIALTDHADYTNLEQLLDAAKKAKYLEEEWD 64

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           I+ + G +L        K+    K        IV+
Sbjct: 65  IRVLPGVELTHVPP--RKIAPMAKKAKELGAEIVV 97


>gi|169335021|ref|ZP_02862214.1| hypothetical protein ANASTE_01427 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169257759|gb|EDS71725.1| hypothetical protein ANASTE_01427 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 274

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 11/79 (13%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE-FSQKAC 63
          + K+     L VH+  S  +G+ +++ ++    A     +AITD + +  A E F     
Sbjct: 1  MSKAD----LHVHTIMS--DGSNTIDELIPMCKARGVDTLAITDHDTI-GAFENFKD--- 50

Query: 64 AAGIQPIIGCQLDIDMQDN 82
             I+ I G +     ++ 
Sbjct: 51 NYDIKIIKGIEFSTTYKNK 69


>gi|297619717|ref|YP_003707822.1| PHP domain protein [Methanococcus voltae A3]
 gi|297378694|gb|ADI36849.1| PHP domain protein [Methanococcus voltae A3]
          Length = 298

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 15/92 (16%)

Query: 14 LQVHSSYSLLEGALS------------LNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          L  HS YS   G +                I+   A      +A+TD N +   L+  + 
Sbjct: 10 LHTHSKYS---GLMRYMGLKFPDSVEEPEKIVRCAAKRGLSVVAVTDHNTIQGGLKAKEF 66

Query: 62 ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPF 93
          A    +  + G ++  +  + L +    + P 
Sbjct: 67 AKKYDVDVVAGSEVMTNDGEILGLYLNEEIPK 98


>gi|21673167|ref|NP_661232.1| hypothetical protein CT0328 [Chlorobium tepidum TLS]
 gi|21646246|gb|AAM71574.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 288

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G  +   I+ K       AI+ITD + +    +    A   G++ I G 
Sbjct: 18 LHIHTKCS--DGLFTPEEIVHKAIHVGLKAISITDHDTVTGIDQAKPLALELGLELIPGV 75

Query: 74 QLD 76
          ++ 
Sbjct: 76 EMS 78


>gi|114319848|ref|YP_741531.1| phosphotransferase domain-containing protein [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114226242|gb|ABI56041.1| PHP C-terminal domain protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 284

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 2/91 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L+   ++ +  A     +A+TD +      E    A   G++ I G 
Sbjct: 7   LHSHSTAS--DGRLTPTELVTRARAKGVATLALTDHDTTAGVAEAQAAAEEQGLRLIPGV 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS 104
           ++                         LL  
Sbjct: 65  EISTTWARRDFHIVGLGVAAQHPGLQTLLAE 95


>gi|148981775|ref|ZP_01816523.1| putative metal-dependent phosphoesterase YciV [Vibrionales
           bacterium SWAT-3]
 gi|145960742|gb|EDK26081.1| putative metal-dependent phosphoesterase YciV [Vibrionales
           bacterium SWAT-3]
          Length = 289

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 85/283 (30%), Gaps = 55/283 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H++ S  +G L+   ++D+  +    A+AITD +      E           IQ I 
Sbjct: 5   LHSHTTAS--DGRLTPPELIDRALSFNIEALAITDHDTTDGLAEARNYIADNNLPIQLIN 62

Query: 72  GCQ--------------LDIDMQDNLKMTNQGKTPFPTVPSIVLLVS-----TAEGYQRL 112
           G +              L++D +         +     +    L+       T EG    
Sbjct: 63  GIEISTVWQNKDIHIVGLNVDPESPELKALIEQQKQHRIGRAELIAQRLEKATREGVLEE 122

Query: 113 IEL------VSRMY----LLDQGKQSV--RICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
           ++L      ++R +    L+D G      ++   +L      G +  T  S      A  
Sbjct: 123 VKLIAGDAPITRAHFAKWLVDNGYAKTMQQVFKKFLTR-NNPGYVPPTWCSMSDAVTAIH 181

Query: 161 F----------NSSQVAEKRLLTFKKLF----GDRLYVNLQRHRGYDRYRESQVVQLAYT 206
                             K +      F    GD   + + + +   + R   +   A  
Sbjct: 182 AAGGQAVLAHPGRYGFTAKWVKRLLTAFVEAKGDA--MEVAQPQQAQQER-RTLADYAIQ 238

Query: 207 HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
           +   L+A+  S F     +      + +        KD    T
Sbjct: 239 Y--KLLASQGSDFHYPSPWMELGRNLWLPSGVEEVWKDWEFQT 279


>gi|254381817|ref|ZP_04997180.1| PHP C-terminal domain containing protein [Streptomyces sp. Mg1]
 gi|194340725|gb|EDX21691.1| PHP C-terminal domain containing protein [Streptomyces sp. Mg1]
          Length = 291

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA--AGIQPII 71
          L  HS+ S  +G  S   ++   AA     +A+TD + +    E         AG+  + 
Sbjct: 5  LHAHSTAS--DGTDSPAELMRNAAAAGLDVVALTDHDTVGGYAEAIAALRGIPAGLTLVT 62

Query: 72 GCQLDIDMQD 81
          G +L   +  
Sbjct: 63 GAELSCRLDG 72


>gi|145589029|ref|YP_001155626.1| phosphotransferase domain-containing protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047435|gb|ABP34062.1| PHP C-terminal domain protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 282

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 24/145 (16%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S  +G L+   + ++  A+     A+TD + L         A A  I  + G 
Sbjct: 11  LHCHSVVS--DGTLTPEALAERAKANGVNLWALTDHDELGGQERAIDAASALKIDYLSGV 68

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           ++ +                     I       EG +R           +      ++  
Sbjct: 69  EISVTWMGQTIHIVGLGIDAKHTGII-------EGLRR---------TREGRGNRAQLMA 112

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRA 158
             LQ++G      ++G   G +  A
Sbjct: 113 EQLQKVG------ISGAYEGALHYA 131


>gi|307717338|gb|ADN88722.1| DNA polymerase III [Listeria welshimeri]
 gi|307717340|gb|ADN88723.1| DNA polymerase III [Listeria welshimeri]
 gi|307717362|gb|ADN88734.1| DNA polymerase III [Listeria welshimeri]
 gi|307717368|gb|ADN88737.1| DNA polymerase III [Listeria welshimeri]
 gi|307717392|gb|ADN88749.1| DNA polymerase III [Listeria welshimeri]
          Length = 231

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++     N  M               +   T  G + L +L++   + +   +  RI  
Sbjct: 165 DINFHDSLNDYMGEGDAYKRARPFHATIYAQTDVGLKNLFKLITMSNI-NYFYRVPRIPR 223

Query: 134 SWLQEI 139
           S L+++
Sbjct: 224 SQLKKL 229


>gi|84394231|ref|ZP_00992959.1| putative metal-dependent phosphoesterase YciV [Vibrio splendidus
           12B01]
 gi|84375145|gb|EAP92064.1| putative metal-dependent phosphoesterase YciV [Vibrio splendidus
           12B01]
          Length = 289

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 85/283 (30%), Gaps = 55/283 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H++ S  +G L+   ++D+       A+AITD +      E           IQ I 
Sbjct: 5   LHSHTTAS--DGRLTPPELIDRALGFNIEALAITDHDTTDGLAEARSYIADNNLPIQLIN 62

Query: 72  GCQ--------------LDIDMQDNLKMTNQGKTPFPTVPSIVLLVS-----TAEGYQRL 112
           G +              L++D +         +     V    ++       T EG    
Sbjct: 63  GIEISTVWQNKDIHIVGLNVDPESPELKALIEQQKQHRVGRAEMIAQRLEKATREGLLEE 122

Query: 113 IEL------VSRMY----LLDQGKQSV--RICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
           ++L      ++R +    L+D G      ++   +L      G +  T  S      A  
Sbjct: 123 VKLIAGDAPITRAHFAKWLVDNGYAKTMQQVFKKFLTR-NNPGYVPPTWCSMSDAVTAIH 181

Query: 161 F----------NSSQVAEKRLLTFKKLF----GDRLYVNLQRHRGYDRYRESQVVQLAYT 206
                          +  K +      F    GD   + + + +   + R   +   A  
Sbjct: 182 AAGGQAVLAHPGRYGLTAKWVKRLLAAFVEAKGDA--MEVAQPQQAQQER-RTLADYAIQ 238

Query: 207 HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
           +   L+A+  S F     +      + +        KD    T
Sbjct: 239 Y--KLLASQGSDFHYPSPWMELGRNLWLPSGVEEVWKDWEFQT 279


>gi|332107762|gb|EGJ08986.1| hypothetical protein RBXJA2T_01585 [Rubrivivax benzoatilyticus
          JA2]
          Length = 285

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  S  +G L    + ++  A      A+TD + L       + A   G+  + GC
Sbjct: 8  LHSHSDVS--DGTLDPATLAERAHARGVELWALTDHDELGGVARAREAALDLGLDFLAGC 65

Query: 74 QLDIDMQDN 82
          ++ +     
Sbjct: 66 EISVTFAGE 74


>gi|297157477|gb|ADI07189.1| hypothetical protein SBI_04068 [Streptomyces bingchenggensis BCW-1]
          Length = 308

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 18/102 (17%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA------GI 67
           L  HS+ S  +G  +   ++   AA     +A+TD + +       ++A  A      G+
Sbjct: 5   LHTHSTAS--DGTDTPAELVLGAAAAGLDVVALTDHDTVGG----YEEAKRALGGCSSGL 58

Query: 68  QPIIG----CQLDIDMQDNLKMTNQGKTPFPTVPSIVL--LV 103
             + G    C+L I   D    T    T       + L  L 
Sbjct: 59  TLVTGAELSCRLTIPPSDGASGTGASGTSEDGAAGVSLHMLA 100


>gi|290475291|ref|YP_003468179.1| protein trpH [Xenorhabdus bovienii SS-2004]
 gi|289174612|emb|CBJ81406.1| Protein trpH [Xenorhabdus bovienii SS-2004]
          Length = 285

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 72/262 (27%), Gaps = 59/262 (22%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ--PII 71
           L  H++ S  +G LS   ++D+  +     +AITD +                +    + 
Sbjct: 13  LHSHTTAS--DGVLSPEQLVDRAVSMGINVLAITDHDTTDGIPPARVYIQQQNLPLSLVA 70

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVP-------SIVL-----------LVSTAEG----Y 109
           G ++    ++              V         + L           L     G    +
Sbjct: 71  GVEISTLWENFEIHIVALNIDTDCVFLTNFLSNQVTLRKQRGIEIGQRLAK--VGIPDAW 128

Query: 110 QRLIEL-----VSRMYLLDQ---GKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF- 160
           +    L     V+R +             I     ++   +G I         I++A   
Sbjct: 129 EGASRLANGGQVTRGHFARYLIEAGVEPTIPK-VFKKYLAKGKIGYVPAQWCTIEQAIET 187

Query: 161 ------------FNSSQVAEKRLLTFKKLF---GDRLYVNL-QRHRGYDRYRESQVVQLA 204
                            ++ K L      F   G    + + Q  +  +     Q+ QLA
Sbjct: 188 IHQAGGQAVIAHPGRYDLSMKWLKRLIAWFQQHGGDA-MEVAQCQQAPNER--QQLGQLA 244

Query: 205 YTHELPLVATNNSLFLSEEDYE 226
             + L +   ++  F     + 
Sbjct: 245 KEYGLKVSLGSD--FHQPCSWI 264


>gi|331007377|ref|ZP_08330566.1| hypothetical protein IMCC1989_1395 [gamma proteobacterium
          IMCC1989]
 gi|330418811|gb|EGG93288.1| hypothetical protein IMCC1989_1395 [gamma proteobacterium
          IMCC1989]
          Length = 293

 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L  HS  S  +G LS  +++          +A+TD + L
Sbjct: 4  LHTHSHCS--DGYLSPQDLVALAKQQGVSVLALTDHDTL 40


>gi|77407423|ref|ZP_00784298.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae H36B]
 gi|77173967|gb|EAO76961.1| DNA polymerase III, alpha subunit, Gram-positive type
           [Streptococcus agalactiae H36B]
          Length = 165

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 27/107 (25%)

Query: 821 VNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
             +   DF + ++ +     A++G+G   A+ I+ A  D  F S  +   R     ++  
Sbjct: 86  YRSHATDFIIEEDTLIPPFVAMEGLGENVAKQIVRAREDGEFLSKTELRKR---GGVSST 142

Query: 881 VLESLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
           ++E        D  G      L +L               +   ++F
Sbjct: 143 LVEK------FDEMGI-----LGNLPE-------------DNQLSLF 165


>gi|39996548|ref|NP_952499.1| PHP domain protein [Geobacter sulfurreducens PCA]
 gi|39983429|gb|AAR34822.1| PHP domain protein [Geobacter sulfurreducens PCA]
 gi|298505564|gb|ADI84287.1| metal-dependent phosphoesterase, PHP family [Geobacter
          sulfurreducens KN400]
          Length = 288

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 10/71 (14%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
          L VHS +S  +G L+   ++   A     ++AI D +    A++   +A A G++     
Sbjct: 6  LHVHSYHS--DGVLAPAVLVAMAAERGLASLAIADHD----AVDGIDEAVAEGVRLGVDV 59

Query: 70 IIGCQLDIDMQ 80
          I   +L +++ 
Sbjct: 60 IPAVELSVELG 70


>gi|254468369|ref|ZP_05081775.1| hypothetical protein KB13_594 [beta proteobacterium KB13]
 gi|207087179|gb|EDZ64462.1| hypothetical protein KB13_594 [beta proteobacterium KB13]
          Length = 279

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G L+ + ++   A  +   +A+TD +++       +K+   GIQ I G 
Sbjct: 6  LHSHSNVS--DGILNPDELITYAAEKKVNMLALTDHDDIAGLEIAKKKSVELGIQFINGV 63

Query: 74 QLDIDMQDN 82
          ++ +  ++ 
Sbjct: 64 EISVSWRNR 72


>gi|319639394|ref|ZP_07994144.1| hypothetical protein HMPREF0604_01768 [Neisseria mucosa C102]
 gi|317399289|gb|EFV79960.1| hypothetical protein HMPREF0604_01768 [Neisseria mucosa C102]
          Length = 278

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   ++     +    +A+TD ++     E   +A   G+  I G 
Sbjct: 4   LHCHS--TVSDGMLSPTEVVRLARQNGCTLLALTDHDHTGGLAEARAEADTLGLPFINGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +                    LL    +G  +RL
Sbjct: 62  EISVTWRGRTIHVVGLDFDEHNETLQNLLAEVRKGRLKRL 101


>gi|260893633|ref|YP_003239730.1| DNA-directed DNA polymerase [Ammonifex degensii KC4]
 gi|260865774|gb|ACX52880.1| DNA-directed DNA polymerase [Ammonifex degensii KC4]
          Length = 576

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 25/102 (24%)

Query: 9   PSFVHL-------QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN----LFSALE 57
           P  V L        VHS YS  +GA +L  I  +        +AI D  +    +   L+
Sbjct: 327 PDLVELKDIKGDFHVHSKYS--DGAATLEEIAAEARKLGLEWVAICDH-SPALKVAGGLD 383

Query: 58  F---SQK--------ACAAGIQPIIGCQLDIDMQDNLKMTNQ 88
                +K        A +  ++ + G ++DI +   L   N+
Sbjct: 384 APTLLKKKEAIERFNAKSPDVKLLCGVEVDILLDGTLDYPNE 425


>gi|290957579|ref|YP_003488761.1| hypothetical protein SCAB_31021 [Streptomyces scabiei 87.22]
 gi|260647105|emb|CBG70204.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 286

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 74/257 (28%), Gaps = 63/257 (24%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  +   ++ +  A     +A+TD +      E    A   G+  + G 
Sbjct: 5   LHCHSTAS--DGTDTPAELVVEARAAGLDVVALTDHDTTRGHAEAI-AALPEGLTLVTGA 61

Query: 74  QLD--------------IDMQDNLKMTNQGKTPFPTVPSI-VLLVS-TAEG----YQRLI 113
           +L                D ++   +  +       VP    ++V     G    ++++ 
Sbjct: 62  ELSCRLDGVSMHMLAYLFDPEEPALLAERELVRDDRVPRARAMIVKLNELGVPVTWEQVA 121

Query: 114 ELVSRMYLLDQGKQSVRI-----------------CLSWLQEIGTEG------------- 143
            +               +                    WL + G                
Sbjct: 122 RI-----AAGGSVGRPHVATALVELGVVPTVNDAFTEQWLADGGRAHVQKHETDPFEALR 176

Query: 144 LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQL 203
           LI   GG +     A       V E  +        D   + +  H  +D    +++  L
Sbjct: 177 LIKGAGGVAVFAHPAAAKRGRTVPESAVAELAAAGLDG--IEV-DHMEHDPATRARLRGL 233

Query: 204 AYTHELPLVATNNSLFL 220
           A    L  +AT +S + 
Sbjct: 234 AKELGL--LATGSSDYH 248


>gi|167570783|ref|ZP_02363657.1| hypothetical protein BoklC_13125 [Burkholderia oklahomensis C6786]
          Length = 105

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  IKG+G   AR I++   A  P+    D   RV  K +  + +E L
Sbjct: 31  ALRGIKGIGPAKARAIVDERTAHGPYKDAADLARRV--KGMGGKTVERL 77


>gi|167563621|ref|ZP_02356537.1| hypothetical protein BoklE_13780 [Burkholderia oklahomensis EO147]
          Length = 105

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  IKG+G   AR I++   A  P+    D   RV  K +  + +E L
Sbjct: 31  ALRGIKGIGPAKARAIVDERTAHGPYKDAADLARRV--KGMGGKTVERL 77


>gi|238020975|ref|ZP_04601401.1| hypothetical protein GCWU000324_00872 [Kingella oralis ATCC 51147]
 gi|237867955|gb|EEP68961.1| hypothetical protein GCWU000324_00872 [Kingella oralis ATCC 51147]
          Length = 283

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 2/95 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +GAL+   ++   A +    +A+TD ++     E   +A    IQ I G 
Sbjct: 4   LHTHS--TISDGALTPTQLVQAAAQNGCRLLALTDHDHTGGLAEARAEAARHRIQFINGA 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           ++ +  +                    LL    +G
Sbjct: 62  EISVTWRHRTIHIVALDFDEHNSRLQTLLAQVRQG 96


>gi|326390020|ref|ZP_08211582.1| PHP domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325993885|gb|EGD52315.1| PHP domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 570

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH++YS  +G  SL +++++        IAITD 
Sbjct: 340 HVHTTYS--DGRNSLVDMVERARKLGYKYIAITDH 372


>gi|307266741|ref|ZP_07548267.1| PHP domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918232|gb|EFN48480.1| PHP domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 570

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH++YS  +G  SL +++++        IAITD 
Sbjct: 340 HVHTTYS--DGRNSLVDMVERARKLGYKYIAITDH 372


>gi|320529390|ref|ZP_08030478.1| PHP domain protein [Selenomonas artemidis F0399]
 gi|320138356|gb|EFW30250.1| PHP domain protein [Selenomonas artemidis F0399]
          Length = 277

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 18/111 (16%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--ACAAGIQPII 71
           L +H+++S  +G  +   I++         I+ITD +++    E  +     A       
Sbjct: 5   LHIHTTFS--DGRDTPEEIVEAAKTAGLRYISITDHDSVEGVTELYESGRCPA------- 55

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL--VSRMY 120
           G QL I            +T       I +      G Q   +L  +S   
Sbjct: 56  GSQLRIIPGVGFSADYPERTVHILGYGIDIY---NAGLQE--KLEELSEAR 101


>gi|225077289|ref|ZP_03720488.1| hypothetical protein NEIFLAOT_02348 [Neisseria flavescens
           NRL30031/H210]
 gi|224951433|gb|EEG32642.1| hypothetical protein NEIFLAOT_02348 [Neisseria flavescens
           NRL30031/H210]
          Length = 278

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   ++     +    +A+TD ++     E   +A   G+  + G 
Sbjct: 4   LHCHS--TVSDGMLSPTEVVRLARQNGCTLLALTDHDHTGGLAEARAEADTLGLPFVNGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +  +D                   LL    +G  +RL
Sbjct: 62  EISVTWRDRTIHVVGLDFDEHNKTLQNLLAEVRKGRLKRL 101


>gi|152991030|ref|YP_001356752.1| family X DNA polymerase IV [Nitratiruptor sp. SB155-2]
 gi|151422891|dbj|BAF70395.1| DNA polymerase IV, family X [Nitratiruptor sp. SB155-2]
          Length = 571

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+ YS  +G  ++ ++           IAITD 
Sbjct: 341 LHMHTVYS--DGKHTIEDMAKAAKEMGYEYIAITDH 374


>gi|307717326|gb|ADN88716.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717328|gb|ADN88717.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717342|gb|ADN88724.1| DNA polymerase III [Listeria marthii]
 gi|307717348|gb|ADN88727.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717364|gb|ADN88735.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717370|gb|ADN88738.1| DNA polymerase III [Listeria marthii]
 gi|307717372|gb|ADN88739.1| DNA polymerase III [Listeria marthii]
 gi|307717376|gb|ADN88741.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717382|gb|ADN88744.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717384|gb|ADN88745.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717398|gb|ADN88752.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717404|gb|ADN88755.1| DNA polymerase III [Listeria monocytogenes]
          Length = 231

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +D     N  M               +   TA G + L +L++   + +   +  RI  
Sbjct: 165 DIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYFYRVPRIPR 223

Query: 134 SWLQEI 139
           S L+++
Sbjct: 224 SQLKKL 229


>gi|156740853|ref|YP_001430982.1| phosphotransferase domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156232181|gb|ABU56964.1| PHP domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 285

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 6/90 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-CAAGIQPIIG 72
           L +H+  +      +   + +  A      IA+TD N     +  +Q+A    GIQ I G
Sbjct: 4   LHIHTHATPHHATWTPEMLAEAAARAGLRVIAVTDHNTTA-TVRATQEAGARIGIQVISG 62

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
            ++                    +  +++ 
Sbjct: 63  VEI----DSGFPAGRSDDLLPFKLWHVLVY 88


>gi|288932584|ref|YP_003436644.1| PHP domain protein [Ferroglobus placidus DSM 10642]
 gi|288894832|gb|ADC66369.1| PHP domain protein [Ferroglobus placidus DSM 10642]
          Length = 206

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 4/88 (4%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQP 69
            L VHS++S  +G  S+  +LD+        I+ITD + +  +LE  +        ++ 
Sbjct: 3  AELHVHSNHS--DGRDSVKKLLDRALEIGIEVISITDHDTVNGSLEAIEIVEEEHLPLKV 60

Query: 70 IIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
          I G +        L    +         
Sbjct: 61 IPGFEASTTEGHLLVYGVRNDFDKGIPF 88


>gi|124027818|ref|YP_001013138.1| hypothetical protein Hbut_0945 [Hyperthermus butylicus DSM 5456]
 gi|123978512|gb|ABM80793.1| universally conserved protein [Hyperthermus butylicus DSM 5456]
          Length = 242

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 63/213 (29%), Gaps = 64/213 (30%)

Query: 14  LQVHSSYSLLEGALSLNNILDKI--AADQQPAIAITDTNNLFSALEFSQKACAAGIQP-- 69
           L  HS  S+ +G  S   I+            IAITD ++   +L+  +     G++   
Sbjct: 8   LHTHS--SVSDGRESPEEIVLTAIDKELGV--IAITDHDSFLGSLKARKVVRELGVELVV 63

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSV 129
           +IG ++  +  D                 I++                     +  ++  
Sbjct: 64  VIGAEIRTEAGD-----------------ILVYC-----------------SENPLERIP 89

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGP----IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
           R     +     EG +++           I    +       E        +F    Y  
Sbjct: 90  RNPFELVDVAREEGCLVVPAHPFDIRRKGISELVYRGRWDAIE--------VF--NAY-- 137

Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSL 218
                  D     + V+ A   +LP +A +++ 
Sbjct: 138 ------SDPLSNRRAVEAARVLKLPGLANSDAH 164


>gi|126174908|ref|YP_001051057.1| phosphotransferase domain-containing protein [Shewanella baltica
           OS155]
 gi|125998113|gb|ABN62188.1| PHP C-terminal domain protein [Shewanella baltica OS155]
          Length = 302

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 5/101 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL--EFSQKACAAGIQPII 71
           L  H++ S  +G L+ + ++ +         AITD + +           + A  ++ I 
Sbjct: 26  LHSHTTAS--DGQLTPSELVARALGKGVQLFAITDHDTVAGLPEARAFNLSQAKPLKLIS 83

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRL 112
           G ++                       +  L       + L
Sbjct: 84  GVEISTRWNSYDIHIVALNFDADNPALLAFL-ENQRELREL 123


>gi|155212706|gb|ABT17427.1| probable histidinol phosphatase [Halorubrum sp. TP009]
          Length = 235

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +G   +  +L++ AA    A+A+TD + + +++E ++KA   G+  ++
Sbjct: 12  VELHAHSALSY-DGRDPVELLLEQAAAVGLDALAVTDHDEIDASIEAAEKAPDYGLVGVV 70

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G ++   +   L    + +          L
Sbjct: 71  GMEVTSAVGHVLAFGIEERIESGLPFDETL 100


>gi|315647907|ref|ZP_07901008.1| putative phosphoesterase [Paenibacillus vortex V453]
 gi|315276553|gb|EFU39896.1| putative phosphoesterase [Paenibacillus vortex V453]
          Length = 284

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 56/172 (32%), Gaps = 23/172 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H++  + +G+LS   I+     +    +AIT+ +      E  +    +G++ I G 
Sbjct: 5   LHCHTN--ISDGSLSFGEIVALAKQEGVGYLAITNHDTTKGLGEMVEAGVKSGVEIIPGM 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE-L------VSRMYLLDQGK 126
           ++     +  +  +                      + + E L       S +      +
Sbjct: 63  EISAYDFERNRRVHILGYYIEEGHP---------ALEEICEPLREMRHQASLVMTNRLIE 113

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLF 178
              +I    ++    +G    TG     I  A   N    +      +K+LF
Sbjct: 114 AGYKITWEQIETYAKDG----TGVYKQHIMHALIDNGYTDSI-YGDLYKELF 160


>gi|311695115|gb|ADP97988.1| PHP C-terminal domain protein [marine bacterium HP15]
          Length = 284

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L  HS+ S  +GALS   ++++ A      +A+TD + 
Sbjct: 5  LHCHSTAS--DGALSPAALVERAAGRGVTHLALTDHDT 40


>gi|307265937|ref|ZP_07547485.1| PHP domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919001|gb|EFN49227.1| PHP domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 339

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 39/157 (24%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN---LF-----S---ALEFSQKA 62
           L  H++ S  +G  +   ++   A +    +AITD +    L+           +F   A
Sbjct: 32  LHCHTTRS--DGNDTPQELIVNAAKNGLRVVAITDHDVQPPLYLDTTNGKIDIKDF---A 86

Query: 63  CAAGIQPIIGCQL----DIDMQD--NLKMTNQGKTPFPTVPSIVLLVSTA-EGYQRLIE- 114
              GI+ ++G +      +D       +M  +       +  +     +  E Y++L E 
Sbjct: 87  RQQGIELVLGIEFSCDTYVDDVHILGYRMDWKNPLLEEAIERMR---KSKTEAYKKLCEV 143

Query: 115 LVSRM-----------YLLDQGKQSVRICLSWLQEIG 140
           L S+            Y  + G    R     ++   
Sbjct: 144 LTSKGMPIDYENEILKYTDENGNIRYR-DPDEVERKH 179


>gi|325679052|ref|ZP_08158646.1| PHP domain protein [Ruminococcus albus 8]
 gi|324109176|gb|EGC03398.1| PHP domain protein [Ruminococcus albus 8]
          Length = 296

 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+  +L +G++ +  ++ +        +AITD + L S+          G++ I   
Sbjct: 5  LHCHT--TLSDGSMGIEEVIAQAKRVGLDFLAITDHDTLSSSSRAQILGERYGVKIIQAV 62

Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSI 99
          +L    +   +  +           +
Sbjct: 63 ELSAWDKVRGQKVHILCYAPQKPNRL 88


>gi|323141626|ref|ZP_08076508.1| PHP domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322413891|gb|EFY04728.1| PHP domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 256

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 15/70 (21%)

Query: 14 LQVHSSYSLLEGAL-----SLNNILDKIAADQQPAIAITDTN---NLFSALEFSQKACAA 65
          L VH+   LL         + ++I+ + A     A+AITD N   N+ +ALE    A   
Sbjct: 8  LHVHT---LL-SPCAEVEMTPHHIVMRAAEYGIGAVAITDHNASANVQAALE---AAQRY 60

Query: 66 GIQPIIGCQL 75
          G++   G ++
Sbjct: 61 GVKVFPGMEV 70


>gi|225569694|ref|ZP_03778719.1| hypothetical protein CLOHYLEM_05788 [Clostridium hylemonae DSM
           15053]
 gi|225161164|gb|EEG73783.1| hypothetical protein CLOHYLEM_05788 [Clostridium hylemonae DSM
           15053]
          Length = 289

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 22/103 (21%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA----GIQP 69
           L VH++ S  +G+ S+  +LD         IA+TD +        S+KA AA    G + 
Sbjct: 19  LHVHTACS--DGSASVEYVLDYAKRAGLRYIAVTDHDTFAG----SRKARAAAGPGGPEV 72

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV-STAEGYQR 111
           I G ++        +              ++       +G QR
Sbjct: 73  IPGAEISARDDKRGRNV-----------HMLCYCPKDEDGLQR 104


>gi|46143201|ref|ZP_00135688.2| COG0587: DNA polymerase III, alpha subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 131

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 58/129 (44%), Positives = 78/129 (60%), Gaps = 7/129 (5%)

Query: 628 MRQALEGMQPDCIEDIIALVSLYRPGPIDNIVV-------YNNRKNGKEKIVSIHPLIDP 680
           M+  + G   DC EDIIALV+L+R GP+++ +V       + + +         H  + P
Sbjct: 1   MKDLISGGGHDCFEDIIALVALFRTGPLESGMVQNFIDRKHGHEEVSYPDAQYQHESLKP 60

Query: 681 MLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNG 740
           +L  T GVI+YQEQVMQIAQ+L+GY+L  AD+LRRAMGKK  EEM  Q+E F  GA K G
Sbjct: 61  ILDPTYGVIVYQEQVMQIAQVLAGYTLGGADLLRRAMGKKKPEEMAAQREIFEKGAIKQG 120

Query: 741 ISKTIAVNI 749
           +       I
Sbjct: 121 VMAGYRARI 129


>gi|317121767|ref|YP_004101770.1| ATP-dependent DNA helicase RecG [Thermaerobacter marianensis DSM
            12885]
 gi|315591747|gb|ADU51043.1| ATP-dependent DNA helicase RecG [Thermaerobacter marianensis DSM
            12885]
          Length = 924

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 17/76 (22%)

Query: 974  ILRKMGIKGYEESV-----------------ATIRGNNIRLAAMVVSKQQKKTRKGSRIG 1016
             L ++G+    + +                   + G    +  +VV  Q+  TR G  + 
Sbjct: 248  RLARLGLHTAGDLLWHLPRRYEDRSTWKPIARLVPGEVATVQGVVVDAQRVPTRTGRTVV 307

Query: 1017 WVTFSEPAKEYEANFF 1032
             +T S+ +   +A FF
Sbjct: 308  RITVSDGSGRLDAVFF 323


>gi|326576320|gb|EGE26230.1| PHP-like protein [Moraxella catarrhalis CO72]
          Length = 314

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS+ S  +G  +   ++ K+A       A+TD + +    E  Q A   G++ I G 
Sbjct: 20  LHMHSTCS--DGTNTPTELIKKVALAGIQMAALTDHDTIKGLDEAKQTAKMVGVELIRGV 77

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           +  +     L            +  +V L
Sbjct: 78  E--VSCTHTLSGGYGKHQEIDKIIHVVAL 104


>gi|326562576|gb|EGE12889.1| PHP-like protein [Moraxella catarrhalis 103P14B1]
 gi|326573516|gb|EGE23479.1| PHP-like protein [Moraxella catarrhalis 101P30B1]
 gi|326577766|gb|EGE27639.1| PHP-like protein [Moraxella catarrhalis O35E]
          Length = 314

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS+ S  +G  +   ++ K+A       A+TD + +    E  Q A   G++ I G 
Sbjct: 20  LHMHSTCS--DGTNTPTELIKKVALAGIQMAALTDHDTIKGLDEAKQTAKMVGVELIRGV 77

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           +  +     L            +  +V L
Sbjct: 78  E--VSCTHTLSGGYGKHQEIDKIIHVVAL 104


>gi|227494911|ref|ZP_03925227.1| PHP domain protein [Actinomyces coleocanis DSM 15436]
 gi|226831363|gb|EEH63746.1| PHP domain protein [Actinomyces coleocanis DSM 15436]
          Length = 284

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VHS   L +G  +   ++ K        IA+TD +      E + +    G+  + G 
Sbjct: 9  LHVHSH--LSDGTDTPTELMQKAQEANLDVIALTDHDITSGWEEAASQVQTTGVSLVRGM 66

Query: 74 QLDIDMQD 81
          +L    Q 
Sbjct: 67 ELSCAWQG 74


>gi|312602641|ref|YP_004022486.1| DNA polymerase III subunit alpha [Burkholderia rhizoxinica HKI 454]
 gi|312169955|emb|CBW76967.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Burkholderia
            rhizoxinica HKI 454]
          Length = 88

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +V  +Q+  T KG  + +V   +         +P
Sbjct: 3    LVTVRQRPGTAKG--VLFVMLEDERGHTNVIIWP 34


>gi|269792308|ref|YP_003317212.1| PHP domain-containing protein [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269099943|gb|ACZ18930.1| PHP domain protein [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 259

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 40/135 (29%), Gaps = 38/135 (28%)

Query: 14  LQVHSSYSL---LE-GALSLNNILDKIAADQQPAIAITDTN---NLFSALEFSQKACAAG 66
           L VHS  S    LE G     +I  + A      +A+TD N   N    +E    A   G
Sbjct: 10  LHVHSVLSPCGELEMGLS---DIARRAAEVGLDGLALTDHNACANAAGLIE---AAQELG 63

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL------VSTAEGYQ-RLIELVSRM 119
           +  I GC++                       +V L          +G+   L  L    
Sbjct: 64  LWVIPGCEV----------------QTEEDIHVVCLFPTLGSAMDFQGWTWNL--LNPVA 105

Query: 120 YLLDQGKQSVRICLS 134
              D     + +   
Sbjct: 106 NDPDVFGYQLVVDKE 120


>gi|326571695|gb|EGE21710.1| PHP-like protein [Moraxella catarrhalis BC7]
          Length = 314

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS+ S  +G  +   ++ K+A       A+TD + +    E  Q A   G++ I G 
Sbjct: 20  LHMHSTCS--DGTNTPTELIKKVALAGIQMAALTDHDTIKGLDEAKQTAKMVGVELIRGV 77

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           +  +     L            +  +V L
Sbjct: 78  E--VSCTHTLSGGYGKHQEIDKIIHVVAL 104


>gi|326562550|gb|EGE12865.1| PHP-like protein [Moraxella catarrhalis 46P47B1]
 gi|326569090|gb|EGE19153.1| PHP-like protein [Moraxella catarrhalis BC8]
          Length = 314

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS+ S  +G  +   ++ K+A       A+TD + +    E  Q A   G++ I G 
Sbjct: 20  LHMHSTCS--DGTNTPTELIKKVALAGIQMAALTDHDTIKGLDEAKQTAKMVGVELIRGV 77

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           +  +     L            +  +V L
Sbjct: 78  E--VSCTHTLSGGYGKHQEIDKIIHVVAL 104


>gi|326561305|gb|EGE11663.1| PHP-like protein [Moraxella catarrhalis 7169]
          Length = 314

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS+ S  +G  +   ++ K+A       A+TD + +    E  Q A   G++ I G 
Sbjct: 20  LHMHSTCS--DGTNTPTELIKKVALAGIQMAALTDHDTIKGLDEAKQTAKMVGVELIRGV 77

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           +  +     L            +  +V L
Sbjct: 78  E--VSCTHTLSGGYGKHQEIDKIIHVVAL 104


>gi|296112536|ref|YP_003626474.1| PHP-like protein [Moraxella catarrhalis RH4]
 gi|295920230|gb|ADG60581.1| PHP-like protein [Moraxella catarrhalis RH4]
 gi|326564103|gb|EGE14343.1| PHP-like protein [Moraxella catarrhalis 12P80B1]
          Length = 314

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS+ S  +G  +   ++ K+A       A+TD + +    E  Q A   G++ I G 
Sbjct: 20  LHMHSTCS--DGTNTPTELIKKVALAGIQMAALTDHDTIKGLDEAKQTAKMVGVELIRGV 77

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           +  +     L            +  +V L
Sbjct: 78  E--VSCTHTLSGGYGKHQEIDKIIHVVAL 104


>gi|261337447|ref|ZP_05965331.1| PHP domain protein [Bifidobacterium gallicum DSM 20093]
 gi|270277837|gb|EFA23691.1| PHP domain protein [Bifidobacterium gallicum DSM 20093]
          Length = 288

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII-G 72
          L  H+ +S  +G  +   ++          +AITD +      E  Q A   G QP++ G
Sbjct: 12 LHCHTVFS--DGTETPTALVRLSREIGLHGVAITDHDTTAGWQEAEQAAVTIG-QPLMRG 68

Query: 73 CQLD 76
           ++ 
Sbjct: 69 TEIT 72


>gi|116754100|ref|YP_843218.1| phosphotransferase domain-containing protein [Methanosaeta
          thermophila PT]
 gi|116665551|gb|ABK14578.1| PHP C-terminal domain protein [Methanosaeta thermophila PT]
          Length = 216

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          L +HS YS  +G  S+  I+          IA+TD N L  ++   +   +
Sbjct: 5  LHIHSKYS--DGGASVEEIVRVARRKGLGGIAVTDHNTLDGSMAALRICRS 53


>gi|323141756|ref|ZP_08076626.1| PHP domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322413745|gb|EFY04594.1| PHP domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 274

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L +HS++S  +G  +   ++D+  A     IAITD ++     E  + A   G  I+ + 
Sbjct: 8  LHLHSTFS--DGRYTPTMLVDEAVAKGIGVIAITDHDSWNGMAEACEAAKRYGGRIRVLT 65

Query: 72 GCQLDIDMQDN 82
          G +L    +D+
Sbjct: 66 GVELGTQYEDD 76


>gi|114332005|ref|YP_748227.1| phosphotransferase domain-containing protein [Nitrosomonas
          eutropha C91]
 gi|114309019|gb|ABI60262.1| PHP C-terminal domain protein [Nitrosomonas eutropha C91]
          Length = 295

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  ++ +G LS + +L   A+     +A+TD +++    E    A    I  I G 
Sbjct: 17 LHSHS--TISDGMLSPSRLLAHAASRGVNILALTDHDDIAGLSEARHCALQENITLINGV 74

Query: 74 QLDIDMQDN 82
          ++ +     
Sbjct: 75 EISVTWHSR 83


>gi|323700736|ref|ZP_08112648.1| PHP domain protein [Desulfovibrio sp. ND132]
 gi|323460668|gb|EGB16533.1| PHP domain protein [Desulfovibrio desulfuricans ND132]
          Length = 205

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 16/102 (15%)

Query: 12  VH----LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           VH    L VHS+ S     L  + IL    +    A+ ITD + +        +    G 
Sbjct: 4   VHMLIDLHVHSTCSPC-SVLKPSEILANARSLGLDAVCITDHDTMS----ILTQCRE-GF 57

Query: 68  QP-----IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS 104
           QP     I+G +     Q +  +    ++    + + +LL  
Sbjct: 58  QPDGLLLIVGME-YTTDQGDYLLFGDVRSLPHGLSAEILLPE 98


>gi|256828396|ref|YP_003157124.1| PHP domain protein [Desulfomicrobium baculatum DSM 4028]
 gi|256577572|gb|ACU88708.1| PHP domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 217

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT---NNL-FSALEFSQKACAAGI 67
          L  HSS+S  +G L    +  +       AIAITD    +N+ F+    +  A    I
Sbjct: 4  LHTHSSFS--DGELIPAELARRAKVAGYRAIAITDHADASNMDFALPRVAAMAKEYSI 59


>gi|257065918|ref|YP_003152174.1| PHP domain-containing protein [Anaerococcus prevotii DSM 20548]
 gi|256797798|gb|ACV28453.1| PHP domain protein [Anaerococcus prevotii DSM 20548]
          Length = 276

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 10/70 (14%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----QKACAAG 66
          +  L  H+++S  +G L ++ +L      +   +AITD +      +      +KA   G
Sbjct: 5  YADLHSHTNHS--DGLLEIDELLKLAQEAKIEVLAITDHDTT----DQYEEIREKAKEIG 58

Query: 67 IQPIIGCQLD 76
          I+ + G ++ 
Sbjct: 59 IRTVKGVEIS 68


>gi|167040549|ref|YP_001663534.1| phosphotransferase domain-containing protein [Thermoanaerobacter
           sp. X514]
 gi|300914593|ref|ZP_07131909.1| PHP domain protein [Thermoanaerobacter sp. X561]
 gi|307724173|ref|YP_003903924.1| PHP domain-containing protein [Thermoanaerobacter sp. X513]
 gi|166854789|gb|ABY93198.1| PHP C-terminal domain protein [Thermoanaerobacter sp. X514]
 gi|300889528|gb|EFK84674.1| PHP domain protein [Thermoanaerobacter sp. X561]
 gi|307581234|gb|ADN54633.1| PHP domain protein [Thermoanaerobacter sp. X513]
          Length = 335

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 35/149 (23%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN---LF--------SALEFSQKA 62
           L  H++ S  +G  S   ++   A      +AITD +    L+        S  EF   A
Sbjct: 28  LHCHTTRS--DGNDSPEELVINAAKGGLKVVAITDHDVPPPLYLDTPQGRISVKEF---A 82

Query: 63  CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS--------TAEGYQRLIE 114
              G++ ++G +   D   +       +  +       LL            E Y++L E
Sbjct: 83  HQHGVEIVLGIEFSCDTYVDDVHILGYRMDWENP----LLAEAVERMRRSKTEAYRKLCE 138

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEG 143
           +++        K       + + +   E 
Sbjct: 139 ILTA-------KGMPIDYENEILKYIDED 160


>gi|54026685|ref|YP_120927.1| hypothetical protein nfa47120 [Nocardia farcinica IFM 10152]
 gi|54018193|dbj|BAD59563.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 293

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 11/89 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  +   ++   AA     +AITD +      E    A   G+  + G 
Sbjct: 14  LHTHSTAS--DGTDTPAELVRHAAAAGLDVVAITDHDTTSGWAEA-VAALPQGMTLVRGM 70

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++             G+  +P    ++  
Sbjct: 71  EMS--------CIGLGEDGWPVPVHLLAY 91


>gi|297202203|ref|ZP_06919600.1| PHP domain-containing protein [Streptomyces sviceus ATCC 29083]
 gi|197713646|gb|EDY57680.1| PHP domain-containing protein [Streptomyces sviceus ATCC 29083]
          Length = 285

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 13/98 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL--FS-ALEFSQKACAAGIQPI 70
           L  HS+ S  +G  +   ++   AA     +A+TD +    +  A+     A  AG+  +
Sbjct: 5   LHCHSTAS--DGTDTPAELVRNAAAAGLDVVALTDHDTTRGYGEAI----AALPAGLTLV 58

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL---LVST 105
            G +L     D + M        P  P ++    LV  
Sbjct: 59  TGAELS-CRIDGVSMHLLAYLFDPEEPELLAERELVRD 95


>gi|323526160|ref|YP_004228313.1| Helix-hairpin-helix DNA-binding class 1 [Burkholderia sp. CCGE1001]
 gi|323383162|gb|ADX55253.1| Helix-hairpin-helix DNA-binding class 1 [Burkholderia sp. CCGE1001]
          Length = 201

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KG+G   A+ I+E    + PF + +D  +RV  K +  + + +L  AG
Sbjct: 33  ALESVKGIGPAHAKAIIEERTKNGPFKNADDLAARV--KGIGNKSVVNLEAAG 83


>gi|282858119|ref|ZP_06267314.1| PHP domain protein [Pyramidobacter piscolens W5455]
 gi|282584041|gb|EFB89414.1| PHP domain protein [Pyramidobacter piscolens W5455]
          Length = 275

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 41/142 (28%), Gaps = 27/142 (19%)

Query: 13  HLQVHSSYSLL-EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           H       S   +G+ S   +           +++TD + +     F       GI+ + 
Sbjct: 7   HFH-----SFCSDGSDSPEALARLGKKRGLAVMSLTDHDTMKGVPAFMSMCRKLGIRAVS 61

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS--------TAEGYQRLIELVSRMYLLD 123
           G ++  +    L +      P         L                +L EL        
Sbjct: 62  GVEISAEYPRTLHILGYNYDPQDEEFRA-ALAKIQYYREERNRRVLAKLNEL-------- 112

Query: 124 QGKQSVRICLSWLQEIGTEGLI 145
                + I L  +Q+   +G+I
Sbjct: 113 ----GIPITLKDVQDEAGKGVI 130


>gi|41019060|gb|AAR98502.1| DNA polymerase III alpha subunit [Pasteuria penetrans]
          Length = 199

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 10/194 (5%)

Query: 477 KLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGD 536
           + +   P    +L+     +     +L +P    L    Q   GL R   TH AG++I  
Sbjct: 9   QWLQWIPRTSTTLEVAFQSAPAFRRQLEEPVYTTLRTFLQHWVGLPRQVVTHPAGVIITS 68

Query: 537 RPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKV 596
           R L +  P+     +   +  ++M  + K G +K D LGL+ L +L              
Sbjct: 69  RSLVEQFPLEVGTHAMWRIQ-YDMHVLRKLGFLKLDILGLRHLAILDSIRSVQ------- 120

Query: 597 DLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPID 656
             S IP  D  TY LL    T+G+FQ+ES GMR+ L  ++P  ++D++ +++L+RPG   
Sbjct: 121 --SHIPDGDAATYQLLARGDTVGLFQVESPGMRRLLRTIRPTRLDDLMDILALHRPGTQA 178

Query: 657 NIVVYNNRKNGKEK 670
               Y      +  
Sbjct: 179 YANRYLRFPKSQRP 192


>gi|254519099|ref|ZP_05131155.1| metal-dependent phosphoesterase [Clostridium sp. 7_2_43FAA]
 gi|226912848|gb|EEH98049.1| metal-dependent phosphoesterase [Clostridium sp. 7_2_43FAA]
          Length = 291

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS +S  +G  +   I+D+   +    I+I+D N++ +       +    I+ I G 
Sbjct: 6  LHMHSCFSD-DGEYTPEEIVDRAMKNNVEIISISDHNSVKAVERALNYSRDKDIKVIPGI 64

Query: 74 QLDIDMQD 81
          ++D    D
Sbjct: 65 EIDCTFND 72


>gi|221134962|ref|ZP_03561265.1| PHP-like protein [Glaciecola sp. HTCC2999]
          Length = 286

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 95/289 (32%), Gaps = 56/289 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-SQKACAA------- 65
           L  H+ YS  +G LS   ++ +    Q   +AITD +   +  E    +A          
Sbjct: 5   LHSHTYYS--DGHLSPAELVLRAHQMQLDVLAITDHDTTQALAEARHAQAQEKRHLEIIS 62

Query: 66  GIQP----------IIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIVL-LVSTAEGYQR-- 111
           GI+           I+G   D   +    ++  Q +T       I + L     G +   
Sbjct: 63  GIELTTRWHGFDIHILGLHFDEHDEQLQQRLLEQTRTRVDRARQICVKLAK--CGIENVF 120

Query: 112 ---LIEL----VSRMYLLD-------------------QGKQSVRICLSWLQEIGTEGLI 145
              ++++    ++R ++                        +   +   W+        I
Sbjct: 121 DDAMVKVGQGQITRAHIAQVLLERGEVSSFQGAFTKYLGKDKRAFVSAQWIDIATAIQWI 180

Query: 146 MLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAY 205
              GG +     A +   ++  ++ L  FK L GD   + +  H      ++  + +LA 
Sbjct: 181 HEAGGVAAIAHPASYDMKTKWLKRLLSEFKSLGGDG--MEVT-HPNMQPTKKELLAKLAL 237

Query: 206 THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYL 254
            ++L  V  ++  F S    E    L   A  T + Q      + +   
Sbjct: 238 EYDLKAVVGSDFHFPSRWS-ELGKRLDISAKLTPLWQDWPCLASFNKEY 285


>gi|319936357|ref|ZP_08010773.1| phosphotransferase [Coprobacillus sp. 29_1]
 gi|319808472|gb|EFW05024.1| phosphotransferase [Coprobacillus sp. 29_1]
          Length = 296

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          ++ L +HS YS  +G  + + ++ +        +AI D N++ +  E  +     GI+ I
Sbjct: 4  YIDLHMHSKYSD-DGQFTPSELVHQCLEAGVEIMAIADHNSVKAIDEEIKCCQEVGIKCI 62

Query: 71 IGCQLDIDMQD 81
             ++D   + 
Sbjct: 63 PAVEIDCTFEG 73


>gi|307717390|gb|ADN88748.1| DNA polymerase III [Listeria welshimeri]
          Length = 231

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++     N  M               +   T  G + L +L++   + +   +  RI  
Sbjct: 165 DINFHDSLNDYMGEGEAYKRARPFHATIYAQTDVGLKNLFKLITMSNI-NYFYRVPRIPR 223

Query: 134 SWLQEI 139
           S L+++
Sbjct: 224 SQLKKL 229


>gi|292492351|ref|YP_003527790.1| PHP domain protein [Nitrosococcus halophilus Nc4]
 gi|291580946|gb|ADE15403.1| PHP domain protein [Nitrosococcus halophilus Nc4]
          Length = 278

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 14/114 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L+   ++ + AA     +A+TD +      E S  +    ++ + G 
Sbjct: 8   LHTHSTAS--DGTLNPTALVQRAAAQGVAVLALTDHDCTGGLAEASAVSANLELELVSGV 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ 127
           ++ +                  +           G Q+L     R Y  ++ ++
Sbjct: 66  EISVTWGGRTVHILGLGIDRENLEL-------QAGLQQL-----RAYRDERARE 107


>gi|134277660|ref|ZP_01764375.1| competence protein-like protein [Burkholderia pseudomallei 305]
 gi|134251310|gb|EBA51389.1| competence protein-like protein [Burkholderia pseudomallei 305]
          Length = 105

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  I+G+G   A+ I++   A  PF    D   RV  K +  + +E L
Sbjct: 31  ALRGIRGIGPAKAKAIVDERSAHGPFKDAADLARRV--KGMGGKTVERL 77


>gi|254181096|ref|ZP_04887694.1| putative competence protein [Burkholderia pseudomallei 1655]
 gi|184211635|gb|EDU08678.1| putative competence protein [Burkholderia pseudomallei 1655]
          Length = 105

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  I+G+G   A+ I++   A  PF    D   RV  K +  + +E L
Sbjct: 31  ALRGIRGIGPAKAKAIVDERSAHGPFKDAADLARRV--KGMGGKTVERL 77


>gi|53720118|ref|YP_109104.1| hypothetical protein BPSL2508 [Burkholderia pseudomallei K96243]
 gi|53724779|ref|YP_102233.1| competence protein ComE [Burkholderia mallei ATCC 23344]
 gi|67642907|ref|ZP_00441658.1| competence protein ComE [Burkholderia mallei GB8 horse 4]
 gi|76808771|ref|YP_334364.1| competence protein ComE [Burkholderia pseudomallei 1710b]
 gi|121598591|ref|YP_993866.1| competence protein ComE [Burkholderia mallei SAVP1]
 gi|124385920|ref|YP_001026929.1| competence protein ComE [Burkholderia mallei NCTC 10229]
 gi|126441341|ref|YP_001059894.1| putative competence protein [Burkholderia pseudomallei 668]
 gi|126449015|ref|YP_001079784.1| competence protein ComE [Burkholderia mallei NCTC 10247]
 gi|126452906|ref|YP_001067183.1| putative competence protein [Burkholderia pseudomallei 1106a]
 gi|166999741|ref|ZP_02265575.1| competence protein ComE [Burkholderia mallei PRL-20]
 gi|167720659|ref|ZP_02403895.1| hypothetical protein BpseD_16742 [Burkholderia pseudomallei DM98]
 gi|167739646|ref|ZP_02412420.1| hypothetical protein Bpse14_16397 [Burkholderia pseudomallei 14]
 gi|167816851|ref|ZP_02448531.1| hypothetical protein Bpse9_17057 [Burkholderia pseudomallei 91]
 gi|167825252|ref|ZP_02456723.1| hypothetical protein Bpseu9_16393 [Burkholderia pseudomallei 9]
 gi|167846755|ref|ZP_02472263.1| hypothetical protein BpseB_15845 [Burkholderia pseudomallei B7210]
 gi|167895343|ref|ZP_02482745.1| hypothetical protein Bpse7_16477 [Burkholderia pseudomallei 7894]
 gi|167903729|ref|ZP_02490934.1| hypothetical protein BpseN_15857 [Burkholderia pseudomallei NCTC
           13177]
 gi|167911978|ref|ZP_02499069.1| hypothetical protein Bpse112_15908 [Burkholderia pseudomallei 112]
 gi|167919969|ref|ZP_02507060.1| hypothetical protein BpseBC_15589 [Burkholderia pseudomallei
           BCC215]
 gi|217420736|ref|ZP_03452241.1| competence protein homolog [Burkholderia pseudomallei 576]
 gi|226197828|ref|ZP_03793402.1| competence protein homolog [Burkholderia pseudomallei Pakistan 9]
 gi|237813288|ref|YP_002897739.1| competence protein ComE [Burkholderia pseudomallei MSHR346]
 gi|242317006|ref|ZP_04816022.1| competence protein homolog [Burkholderia pseudomallei 1106b]
 gi|254176960|ref|ZP_04883617.1| competence protein ComE [Burkholderia mallei ATCC 10399]
 gi|254191930|ref|ZP_04898430.1| putative competence protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254195647|ref|ZP_04902074.1| putative competence protein [Burkholderia pseudomallei S13]
 gi|254203917|ref|ZP_04910277.1| competence protein ComE [Burkholderia mallei FMH]
 gi|254208897|ref|ZP_04915245.1| competence protein ComE [Burkholderia mallei JHU]
 gi|254259982|ref|ZP_04951036.1| competence protein homolog [Burkholderia pseudomallei 1710a]
 gi|254295629|ref|ZP_04963087.1| putative competence protein [Burkholderia pseudomallei 406e]
 gi|254360047|ref|ZP_04976317.1| competence protein ComE [Burkholderia mallei 2002721280]
 gi|52210532|emb|CAH36515.1| putative exported protein [Burkholderia pseudomallei K96243]
 gi|52428202|gb|AAU48795.1| competence protein ComE [Burkholderia mallei ATCC 23344]
 gi|76578224|gb|ABA47699.1| competence protein ComE [Burkholderia pseudomallei 1710b]
 gi|121227401|gb|ABM49919.1| competence protein ComE [Burkholderia mallei SAVP1]
 gi|124293940|gb|ABN03209.1| competence protein ComE [Burkholderia mallei NCTC 10229]
 gi|126220834|gb|ABN84340.1| putative competence protein [Burkholderia pseudomallei 668]
 gi|126226548|gb|ABN90088.1| competence protein homolog [Burkholderia pseudomallei 1106a]
 gi|126241885|gb|ABO04978.1| competence protein ComE [Burkholderia mallei NCTC 10247]
 gi|147745429|gb|EDK52509.1| competence protein ComE [Burkholderia mallei FMH]
 gi|147750773|gb|EDK57842.1| competence protein ComE [Burkholderia mallei JHU]
 gi|148029287|gb|EDK87192.1| competence protein ComE [Burkholderia mallei 2002721280]
 gi|157805532|gb|EDO82702.1| putative competence protein [Burkholderia pseudomallei 406e]
 gi|157987752|gb|EDO95517.1| putative competence protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|160698001|gb|EDP87971.1| competence protein ComE [Burkholderia mallei ATCC 10399]
 gi|169652393|gb|EDS85086.1| putative competence protein [Burkholderia pseudomallei S13]
 gi|217396148|gb|EEC36165.1| competence protein homolog [Burkholderia pseudomallei 576]
 gi|225930016|gb|EEH26029.1| competence protein homolog [Burkholderia pseudomallei Pakistan 9]
 gi|237503697|gb|ACQ96015.1| competence protein ComE [Burkholderia pseudomallei MSHR346]
 gi|238524124|gb|EEP87559.1| competence protein ComE [Burkholderia mallei GB8 horse 4]
 gi|242140245|gb|EES26647.1| competence protein homolog [Burkholderia pseudomallei 1106b]
 gi|243064233|gb|EES46419.1| competence protein ComE [Burkholderia mallei PRL-20]
 gi|254218671|gb|EET08055.1| competence protein homolog [Burkholderia pseudomallei 1710a]
          Length = 105

 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  I+G+G   A+ I++   A  PF    D   RV  K +  + +E L
Sbjct: 31  ALRGIRGIGPAKAKAIVDERSAHGPFKDAADLARRV--KGMGGKTVERL 77


>gi|261821580|ref|YP_003259686.1| PHP domain protein [Pectobacterium wasabiae WPP163]
 gi|261605593|gb|ACX88079.1| PHP domain protein [Pectobacterium wasabiae WPP163]
          Length = 290

 Score = 53.3 bits (126), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/258 (13%), Positives = 71/258 (27%), Gaps = 51/258 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H++ S  +G L+   ++ +    +   +AITD +      E        G  ++ I 
Sbjct: 16  LHSHTTAS--DGLLTPTALVSRAVDMRVSVLAITDHDTTAGLEEARNAIAQHGLPLRLIP 73

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL---VSTAEGYQRLI--------------- 113
           G ++    +++                  LL       +     I               
Sbjct: 74  GVEISTLWENHEIHIVGLGMDIAHPALSGLLQQQADNRQSRAEQIATRLEKSRIPDALAG 133

Query: 114 --ELVSRMYLLDQGKQSVRICL-------SWLQEIGTEGLIMLTGGSSGPIDRAFFF--- 161
              L +   +         I L          ++   +G I         I +A      
Sbjct: 134 AQRLATGGQITRAHFARYLIELGIATNMNQVFKKYLAKGKIGYVPPQWCTIPQAIEAIHQ 193

Query: 162 ----------NSSQVAEKRLLTFKKLFGDR--LYVNL-QRHRGYDRYRESQVVQLAYTHE 208
                         +  K L     +F +   + + + Q  +  D    +Q+ + A    
Sbjct: 194 SGGVSVLAHPGRYDLTAKWLKRLLAMFAESGGIAMEVAQCQQAPDER--TQLARYARDFN 251

Query: 209 LPLVATNNSLFLSEEDYE 226
           L  +A+  S F     + 
Sbjct: 252 L--MASQGSDFHLPCAWI 267


>gi|238919594|ref|YP_002933109.1| hypothetical protein NT01EI_1693 [Edwardsiella ictaluri 93-146]
 gi|238869163|gb|ACR68874.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 303

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 12/75 (16%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA------GI 67
          L  H+  S  +G LS   ++ +        +AITD + L         A  A       +
Sbjct: 16 LHSHTRAS--DGLLSPEALVVRAVERGVTTLAITDHDTLGGI----SAARQAIADQSLPL 69

Query: 68 QPIIGCQLDIDMQDN 82
          + I G ++    + +
Sbjct: 70 ELIAGVEISTLWEHH 84


>gi|289579329|ref|YP_003477956.1| PHP domain protein [Thermoanaerobacter italicus Ab9]
 gi|289529042|gb|ADD03394.1| PHP domain protein [Thermoanaerobacter italicus Ab9]
          Length = 573

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH++YS  +GA +L  +++         I ITD 
Sbjct: 340 HVHTTYS--DGANTLIEMIETARKLGYKYIGITDH 372


>gi|111225427|ref|YP_716221.1| hypothetical protein FRAAL6083 [Frankia alni ACN14a]
 gi|111152959|emb|CAJ64707.1| Conserved hypothetical protein [Frankia alni ACN14a]
          Length = 300

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L  HS+ S  +G +S  +++   A      IA+TD + 
Sbjct: 17 LHTHSTAS--DGLVSPEDLVRLAAESGLSVIALTDHDT 52


>gi|329945969|ref|ZP_08293656.1| PHP domain protein [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328528417|gb|EGF55395.1| PHP domain protein [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 281

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 10/71 (14%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA----GIQPI 70
            HS+ S  +G  S   ++ + A      + +TD + +        +A +A    G+  +
Sbjct: 6  HTHSACS--DGTDSPAELMARAAGSGLDVVGLTDHDTMAG----WDEAASAVPVTGVTLL 59

Query: 71 IGCQLDIDMQD 81
           G ++      
Sbjct: 60 RGTEISCAADG 70


>gi|300711015|ref|YP_003736829.1| PHP domain protein [Halalkalicoccus jeotgali B3]
 gi|299124698|gb|ADJ15037.1| PHP domain protein [Halalkalicoccus jeotgali B3]
          Length = 229

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 9/69 (13%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC----AAGI 67
          V L  HS+ S  +G   ++ +L++ +A    AIAITD +    A E S++A       G+
Sbjct: 4  VELHAHSALS-HDGRDPVDFLLEQASAVGLDAIAITDHD----AFEASREAARLAPEYGL 58

Query: 68 QPIIGCQLD 76
            I G ++ 
Sbjct: 59 VGIPGIEVT 67


>gi|220931411|ref|YP_002508319.1| DNA polymerase X family protein [Halothermothrix orenii H 168]
 gi|219992721|gb|ACL69324.1| DNA polymerase X family protein [Halothermothrix orenii H 168]
          Length = 573

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HSSYS  +G  S+  I++         +AITD 
Sbjct: 342 LHIHSSYS--DGGFSIREIIEAARKKGYEYLAITDH 375


>gi|307717354|gb|ADN88730.1| DNA polymerase III [Listeria innocua]
          Length = 231

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++     N  M               +   T  G + L +L++   + +   +  RI  
Sbjct: 165 DIEFHDSLNDYMGEGDAYKRARPFHATIYAQTDVGLKNLFKLITMSNI-NYFYRVPRIPR 223

Query: 134 SWLQEI 139
           S L+++
Sbjct: 224 SQLKKL 229


>gi|297545480|ref|YP_003677782.1| PHP domain protein [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296843255|gb|ADH61771.1| PHP domain protein [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 570

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH++YS  +GA +L  +++         I ITD 
Sbjct: 340 HVHTTYS--DGANTLIEMIETARKLGYKYIGITDH 372


>gi|196230412|ref|ZP_03129274.1| PHP domain protein [Chthoniobacter flavus Ellin428]
 gi|196225342|gb|EDY19850.1| PHP domain protein [Chthoniobacter flavus Ellin428]
          Length = 238

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L  HS YS  +G  S  +++           A+TD N 
Sbjct: 7  LHCHSWYS-GDGVSSPESLIASARKKGLHGFALTDHNT 43


>gi|152991703|ref|YP_001357424.1| DNA uptake protein [Sulfurovum sp. NBC37-1]
 gi|151423564|dbj|BAF71067.1| DNA uptake protein [Sulfurovum sp. NBC37-1]
          Length = 111

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
           L  IKG+G   A  I++      F S EDF  RV
Sbjct: 33  LMQIKGIGEKKADAIIKERKKGKFKSFEDF-QRV 65


>gi|323484737|ref|ZP_08090096.1| PHP domain-containing protein [Clostridium symbiosum WAL-14163]
 gi|323401974|gb|EGA94313.1| PHP domain-containing protein [Clostridium symbiosum WAL-14163]
          Length = 285

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F+ L VHS  S  +G L+   + +        A A+TD +      E  + A   G++ I
Sbjct: 3  FIDLHVHS--SASDGTLAPGPVTELALEKGLYAYALTDHDTTDGIDEAVRAAAGTGLEVI 60

Query: 71 IGCQLDIDMQDN 82
           G +L    +  
Sbjct: 61 PGTELSCIYEGK 72


>gi|257054725|ref|YP_003132557.1| putative metal-dependent phosphoesterase, PHP family
           [Saccharomonospora viridis DSM 43017]
 gi|256584597|gb|ACU95730.1| predicted metal-dependent phosphoesterase, PHP family
           [Saccharomonospora viridis DSM 43017]
          Length = 295

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 13/94 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA---GIQPI 70
           L  HS+ S  +G  S   ++   A      IA+TD +         + A AA   G++ +
Sbjct: 8   LHTHSAVS--DGTDSPAELVRIAAESGLDVIALTDHDTTAG----WEAAAAALPPGLRLV 61

Query: 71  IG----CQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
            G    C+L       + +        P  P++V
Sbjct: 62  PGAELSCELPAADGRKVSVHVLAYLFDPDAPALV 95


>gi|149907889|ref|ZP_01896557.1| putative metal-dependent phosphoesterase [Moritella sp. PE36]
 gi|149808895|gb|EDM68826.1| putative metal-dependent phosphoesterase [Moritella sp. PE36]
          Length = 308

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--KACAAGIQPII 71
          L  H++ S  +G+LS   ++ +    +    AITD +      E      A A  I  I 
Sbjct: 23 LHSHTTAS--DGSLSPAELVQRAVEHRVDVFAITDHDTTNGLQEAHDTIAAHALPITLIN 80

Query: 72 GCQLDIDMQDN 82
          G ++  + Q++
Sbjct: 81 GVEVSTNWQNH 91


>gi|294789678|ref|ZP_06754911.1| PHP domain protein [Simonsiella muelleri ATCC 29453]
 gi|294482390|gb|EFG30084.1| PHP domain protein [Simonsiella muelleri ATCC 29453]
          Length = 276

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  S  +G LS   ++   AA+    +A+TD ++    ++  ++A   GI+ I G 
Sbjct: 4  LHCHSYVS--DGELSPIELVKMAAANSCTMLALTDHDHTGGIVQAREEAMWRGIRFISGV 61

Query: 74 QLDIDMQD 81
          ++ +    
Sbjct: 62 EISVTWNG 69


>gi|281415805|ref|ZP_06247547.1| predicted metal-dependent phosphoesterase, PHP family protein
           [Micrococcus luteus NCTC 2665]
          Length = 283

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 68/212 (32%), Gaps = 27/212 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G     +++   A      +A+TD +      E +  A   G+  + G 
Sbjct: 6   LHTHSTES--DGTEPPADVVRAAARVGLDGLALTDHDTTAGWAEAAHAARETGLTLVPGM 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSI---VLLVSTAEGYQRLIELVSRMY-LLDQGKQSV 129
           ++     D + +        P  P++   V L   A        L+ R   ++ +     
Sbjct: 64  EMSCTSADGVSVHVLSYLHDPEDPALLREVGLARDA-------RLI-RAQEMVRRLGADF 115

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR--LYVNLQ 187
            I    +QE   E   +     +  +           A      F ++   R   YV   
Sbjct: 116 PITWELVQEHAAENATIGRPHLADALVTIGAVPDRSAA------FTEILAGRSKYYV--- 166

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLF 219
            H   D      +++ A    +P+ A   +  
Sbjct: 167 PHFAPDPAEAVALIRAAG--GVPVFAHPRARM 196


>gi|289609822|emb|CBI60377.1| unnamed protein product [Sordaria macrospora]
          Length = 119

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 60/107 (56%), Positives = 80/107 (74%)

Query: 553 LPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLL 612
           +PVTQF+MK++E AGL+KFDFLGLKTL++L+ +++ LA+RG+ VDL  + +DD  TY LL
Sbjct: 1   MPVTQFDMKYVEGAGLVKFDFLGLKTLSVLKFAVELLARRGIVVDLDSLLWDDEATYELL 60

Query: 613 TTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIV 659
               T+G+FQLES GMR+ L  ++P    DIIALVSLYRPG    I 
Sbjct: 61  KRGDTVGVFQLESEGMRRTLTAVRPTNFGDIIALVSLYRPGRWTTIP 107


>gi|293375266|ref|ZP_06621548.1| PHP domain protein [Turicibacter sanguinis PC909]
 gi|325842096|ref|ZP_08167598.1| PHP domain protein [Turicibacter sp. HGF1]
 gi|292646022|gb|EFF64050.1| PHP domain protein [Turicibacter sanguinis PC909]
 gi|325489730|gb|EGC92087.1| PHP domain protein [Turicibacter sp. HGF1]
          Length = 274

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 10/67 (14%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ----KACAAGIQP 69
          L +H+ YS  +G+ S   ++          I++TD N     +E  +          +  
Sbjct: 5  LHMHTYYS--DGSFSPREMVQLAKKKGLGLISVTDHNT----IEAHEEFEAACQELEMNY 58

Query: 70 IIGCQLD 76
          ++G +LD
Sbjct: 59 VVGVELD 65


>gi|239918017|ref|YP_002957575.1| predicted metal-dependent phosphoesterase, PHP family [Micrococcus
           luteus NCTC 2665]
 gi|239839224|gb|ACS31021.1| predicted metal-dependent phosphoesterase, PHP family [Micrococcus
           luteus NCTC 2665]
          Length = 286

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 68/212 (32%), Gaps = 27/212 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G     +++   A      +A+TD +      E +  A   G+  + G 
Sbjct: 9   LHTHSTES--DGTEPPADVVRAAARVGLDGLALTDHDTTAGWAEAAHAARETGLTLVPGM 66

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSI---VLLVSTAEGYQRLIELVSRMY-LLDQGKQSV 129
           ++     D + +        P  P++   V L   A        L+ R   ++ +     
Sbjct: 67  EMSCTSADGVSVHVLSYLHDPEDPALLREVGLARDA-------RLI-RAQEMVRRLGADF 118

Query: 130 RICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR--LYVNLQ 187
            I    +QE   E   +     +  +           A      F ++   R   YV   
Sbjct: 119 PITWELVQEHAAENATIGRPHLADALVTIGAVPDRSAA------FTEILAGRSKYYV--- 169

Query: 188 RHRGYDRYRESQVVQLAYTHELPLVATNNSLF 219
            H   D      +++ A    +P+ A   +  
Sbjct: 170 PHFAPDPAEAVALIRAAG--GVPVFAHPRARM 199


>gi|326391222|ref|ZP_08212765.1| PHP domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325992726|gb|EGD51175.1| PHP domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 336

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 35/149 (23%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN---LF--------SALEFSQKA 62
           L  H++ S  +G  S   ++   A      +AITD +    L+        S  EF   A
Sbjct: 29  LHCHTTRS--DGNDSPEELIINAAKSGLKVVAITDHDVPPPLYLDTSQGRISVKEF---A 83

Query: 63  CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS--------TAEGYQRLIE 114
              G++ ++G +   D   +       +  +       LL            E Y++L E
Sbjct: 84  HQHGVEIVLGIEFSCDTYVDDVHILGYRMDWENP----LLAEVVERMRRSKTEAYRKLCE 139

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEG 143
           +++        K       + + +   E 
Sbjct: 140 ILTA-------KGMPIDYENEILKYIDEN 161


>gi|307717320|gb|ADN88713.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717330|gb|ADN88718.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717378|gb|ADN88742.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717380|gb|ADN88743.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717394|gb|ADN88750.1| DNA polymerase III [Listeria monocytogenes]
 gi|307717396|gb|ADN88751.1| DNA polymerase III [Listeria monocytogenes]
          Length = 231

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLS 134
           +D     N  M               +   TA G + L +L++   + +   +  RI  S
Sbjct: 166 IDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYFYRVPRIPRS 224

Query: 135 WLQEI 139
            L+++
Sbjct: 225 QLKKL 229


>gi|320095769|ref|ZP_08027415.1| PHP domain protein [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319977299|gb|EFW08996.1| PHP domain protein [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 287

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            HSSYS  +G  +   ++          + +TD +      E +      G+  + G +
Sbjct: 13 HTHSSYS--DGTDAPAQLMRAARDAGLSMVGLTDHDTFAGWDEAAAAVGETGVALLRGVE 70

Query: 75 LD 76
          + 
Sbjct: 71 IS 72


>gi|283785439|ref|YP_003365304.1| putative phosphoesterase [Citrobacter rodentium ICC168]
 gi|282948893|emb|CBG88495.1| putative phosphoesterase [Citrobacter rodentium ICC168]
          Length = 293

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ--PII 71
          L  H++ S  +G L+   ++ + A  +   +AITD +   +    S++   + +    I 
Sbjct: 12 LHSHTTAS--DGTLTPEALVHRAAEMRVGTLAITDHDTTAAIPAASEEISRSALPLTLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|226943681|ref|YP_002798754.1| phosphoesterase [Azotobacter vinelandii DJ]
 gi|226718608|gb|ACO77779.1| Phosphoesterase (PHP family) [Azotobacter vinelandii DJ]
          Length = 287

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +GALS   ++ +        +A+TD + L    E    +    I+ I G 
Sbjct: 5  LHCHSTAS--DGALSPAEVVCRAHGRGVRLLALTDHDTLDGLPEAQAASAGLDIELINGI 62

Query: 74 QLD 76
          +L 
Sbjct: 63 ELS 65


>gi|312137208|ref|YP_004004545.1| php domain protein [Methanothermus fervidus DSM 2088]
 gi|311224927|gb|ADP77783.1| PHP domain protein [Methanothermus fervidus DSM 2088]
          Length = 212

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 12/67 (17%)

Query: 15 QVHSSYSLLEGALS--LNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ--PI 70
           +H+ YS   G      ++I+         AIAITD N     ++  +      I+   I
Sbjct: 7  HIHTLYS---GDSKNIPDDIVKIAKKRGLDAIAITDHNT----IKGYEVIAKRNIEDILI 59

Query: 71 I-GCQLD 76
          I G ++ 
Sbjct: 60 IPGIEIS 66


>gi|260886992|ref|ZP_05898255.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Selenomonas sputigena ATCC 35185]
 gi|260863054|gb|EEX77554.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Selenomonas sputigena ATCC 35185]
          Length = 261

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 6/52 (11%)

Query: 29 LNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQPIIGCQLD 76
             ++          IAITD + +       ++    A   GI  I G +  
Sbjct: 3  PEELVAAAKEAGLRYIAITDHDTVDGVTHLYEEGLLPAKGIGI--IPGIEFS 52


>gi|313159489|gb|EFR58852.1| PHP domain protein [Alistipes sp. HGB5]
          Length = 296

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS YS  +G     +I+ K AA      A+TD N +    E    A  AG++ + G 
Sbjct: 6  LHIHSQYS-SDGEFRPADIVGKCAAGGVDLFALTDHNTVRGLDEACDGALQAGLEFVPGI 64

Query: 74 QLDIDMQD 81
          ++D   + 
Sbjct: 65 EIDCSFEG 72


>gi|291278778|ref|YP_003495613.1| DNA uptake protein [Deferribacter desulfuricans SSM1]
 gi|290753480|dbj|BAI79857.1| DNA uptake protein [Deferribacter desulfuricans SSM1]
          Length = 84

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
           L ++KG+G   A  I+E    KPFDS+E+       K + +R LE
Sbjct: 31  LMSLKGLGEKKAEAIIERREKKPFDSIEELLE---IKGIGKRFLE 72


>gi|149195655|ref|ZP_01872712.1| PHP-like protein [Lentisphaera araneosa HTCC2155]
 gi|149141117|gb|EDM29513.1| PHP-like protein [Lentisphaera araneosa HTCC2155]
          Length = 282

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+  + +G L+   + + ++       ++TD +      E +  A   G+Q I G 
Sbjct: 9  LHCHSN--ISDGKLTPVELTELMSQQGVKLFSLTDHDTTAGCKEAADHAKKLGLQFIPGV 66

Query: 74 QLDIDMQDN 82
          ++  D  D 
Sbjct: 67 EVSSDFNDK 75


>gi|332178530|gb|AEE14219.1| PHP domain protein [Thermodesulfobium narugense DSM 14796]
          Length = 223

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 7/64 (10%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA--AGIQPII 71
          L VH+++S  +  +S++ +  K        IAITD N +  A+     A      I+ II
Sbjct: 7  LHVHTNFS-KDSNISIDELYKKSILSGINVIAITDHNTVKGAM----LAKDRIKDIEVII 61

Query: 72 GCQL 75
          G ++
Sbjct: 62 GEEI 65


>gi|300723351|ref|YP_003712654.1| protein trpH [Xenorhabdus nematophila ATCC 19061]
 gi|297629871|emb|CBJ90489.1| Protein trpH [Xenorhabdus nematophila ATCC 19061]
          Length = 290

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 80/277 (28%), Gaps = 63/277 (22%)

Query: 1   LTQY---LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE 57
           +T+    + K      L  H++ S  +G LS   ++D+  A     +AITD +       
Sbjct: 1   MTEAASEMTKRYD---LHSHTTAS--DGVLSPEQLVDRAIAVGIHVLAITDHDTTEGIQP 55

Query: 58  FSQKACAAGIQ--PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV-LLV-----STAEGY 109
                    +    + G ++   + +N ++   G        ++   L          G 
Sbjct: 56  ALNHIQQNNLPLTLVSGAEIS-TLWENFEIHIVGLNIDINSIALRKFLANQVDLRNQRGI 114

Query: 110 Q---RL------------IEL-----VSRMYLLDQ---GKQSVRICLSWLQEIGTEGLIM 146
           +   RL              L     V+R +             I     ++   +G I 
Sbjct: 115 EIGNRLAKASIPDAWEGASRLANGGQVTRGHFARYLIEAGVEPTI-KKVFKKYLAKGKIG 173

Query: 147 LTGGSSGPIDRAFF-------------FNSSQVAEKRLLTFKKLF---GDRLYVNL-QRH 189
                   I +A                    ++ K L      F   G    + + Q  
Sbjct: 174 YVPPQWCTIAQAIEVIHQAGGQAVIAHPGRYDLSMKWLKRLIDWFKQHGGDA-MEVAQCQ 232

Query: 190 RGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
           +  +     Q+ QLA  + L +   ++  F     + 
Sbjct: 233 QAPNER--QQLGQLAREYGLKVSLGSD--FHQPCSWI 265


>gi|317128868|ref|YP_004095150.1| PHP domain protein [Bacillus cellulosilyticus DSM 2522]
 gi|315473816|gb|ADU30419.1| PHP domain protein [Bacillus cellulosilyticus DSM 2522]
          Length = 291

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+ S  +G  S + +++K   +    +++TD +     +E  + A    ++ I G 
Sbjct: 13 LHMHSTAS--DGGYSPSQLMEKCINNHLSIVSLTDHDTTAGVIEAMKVAKEHHLRFIPGI 70

Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPS 98
          +L       +K T+     +   P 
Sbjct: 71 ELS----TRIKNTHVDILGYGIDPH 91


>gi|90412189|ref|ZP_01220195.1| putative metal-dependent phosphoesterase [Photobacterium profundum
           3TCK]
 gi|90326913|gb|EAS43298.1| putative metal-dependent phosphoesterase [Photobacterium profundum
           3TCK]
          Length = 297

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 13/97 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA------CAAGI 67
           L  H++ S  +G LS   +L +    +  A+AITD +     +E    A          I
Sbjct: 5   LHSHTTAS--DGCLSPEELLKRAVERRVDALAITDHDT----VEALLPAQRIIDEQELPI 58

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS 104
             I G ++   +  N  +   G       P++  L+ 
Sbjct: 59  TLIKGIEIS-TLWSNFDIHIVGLNIDSEHPALTALIQ 94


>gi|74317546|ref|YP_315286.1| phosphoesterase PHP [Thiobacillus denitrificans ATCC 25259]
 gi|74057041|gb|AAZ97481.1| phosphoesterase PHP [Thiobacillus denitrificans ATCC 25259]
          Length = 287

 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          L  HS  S  +G LS   ++ + AA+    +A+TD +++   
Sbjct: 6  LHCHSDVS--DGLLSPAEVVARAAANGVDVLALTDHDDVSGI 45


>gi|224368198|ref|YP_002602361.1| two domain fusion protein Includes: metal-dependent
          phosphoesterase / ribonuclease III [Desulfobacterium
          autotrophicum HRM2]
 gi|223690914|gb|ACN14197.1| two domain fusion protein Includes: metal-dependent
          phosphoesterase / ribonuclease III [Desulfobacterium
          autotrophicum HRM2]
          Length = 520

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 10/75 (13%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ----P 69
          L +HS+ S  +G LS   I+         AIAITD +         ++   AG+      
Sbjct: 4  LHIHSTAS--DGTLSPLEIVKTAVDSAINAIAITDHDTTDGV----REIIEAGVPQTLEL 57

Query: 70 IIGCQLDIDMQDNLK 84
          I G ++        +
Sbjct: 58 ITGIEISATPPPGFE 72


>gi|186475705|ref|YP_001857175.1| putative DNA uptake protein, ComEA-like protein [Burkholderia
           phymatum STM815]
 gi|184192164|gb|ACC70129.1| putative DNA uptake protein, ComEA-like protein [Burkholderia
           phymatum STM815]
          Length = 186

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KG+G   A+ I++    + PF   +D  +RV  K + ++ +++L  AG
Sbjct: 33  ALESVKGIGPVHAKAIIDERTKNGPFKDADDLANRV--KGIGQKSVKNLEAAG 83


>gi|56964441|ref|YP_176172.1| hypothetical protein ABC2676 [Bacillus clausii KSM-K16]
 gi|56910684|dbj|BAD65211.1| DNA-directed DNA polymerase beta chain [Bacillus clausii KSM-K16]
          Length = 571

 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 28/101 (27%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA----------- 62
           L +H+++S  +GA SL  + +         IAITD +       F + A           
Sbjct: 339 LHMHTTWS--DGAHSLEEMAEAAKKRGYTHIAITDHS------RFLKVANGLSIERLKQQ 390

Query: 63  ---------CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFP 94
                       GI  + G ++DI     L   ++  +   
Sbjct: 391 HEYIREYNQQNNGITILTGIEMDILPNGELDYPDELLSEID 431


>gi|254977155|ref|ZP_05273627.1| putative phophoesterase [Clostridium difficile QCD-66c26]
 gi|255094485|ref|ZP_05323963.1| putative phophoesterase [Clostridium difficile CIP 107932]
 gi|255102741|ref|ZP_05331718.1| putative phophoesterase [Clostridium difficile QCD-63q42]
 gi|255308562|ref|ZP_05352733.1| putative phophoesterase [Clostridium difficile ATCC 43255]
 gi|255316236|ref|ZP_05357819.1| putative phophoesterase [Clostridium difficile QCD-76w55]
 gi|255518897|ref|ZP_05386573.1| putative phophoesterase [Clostridium difficile QCD-97b34]
 gi|255652076|ref|ZP_05398978.1| putative phophoesterase [Clostridium difficile QCD-37x79]
 gi|260685049|ref|YP_003216334.1| putative phophoesterase [Clostridium difficile CD196]
 gi|260688707|ref|YP_003219841.1| putative phophoesterase [Clostridium difficile R20291]
 gi|260211212|emb|CBA66710.1| putative phophoesterase [Clostridium difficile CD196]
 gi|260214724|emb|CBE07396.1| putative phophoesterase [Clostridium difficile R20291]
          Length = 278

 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            L  H+  S+ +   +   I+ K A      +AIT+ + L    E        GI  I 
Sbjct: 3  TELHCHT--SISDNNFTTEEIIKKAAEKNINILAITNHDTLSGLDEALVLGEHYGITIIP 60

Query: 72 GCQLD 76
          G ++ 
Sbjct: 61 GIEIS 65


>gi|126701155|ref|YP_001090052.1| putative phophoesterase [Clostridium difficile 630]
 gi|115252592|emb|CAJ70435.1| putative polymerase/histidinol phosphatase-like [Clostridium
          difficile]
          Length = 278

 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            L  H+  S+ +   +   I+ K A      +AIT+ + L    E        GI  I 
Sbjct: 3  TELHCHT--SISDNNFTTEEIIKKAAEKNINILAITNHDTLSGLDEALVLGEHYGITIIP 60

Query: 72 GCQLD 76
          G ++ 
Sbjct: 61 GIEIS 65


>gi|307331743|ref|ZP_07610847.1| PHP domain protein [Streptomyces violaceusniger Tu 4113]
 gi|306882609|gb|EFN13691.1| PHP domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 284

 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA---GIQPI 70
          L  HS+ S  +G  +   ++   AA     +A+TD + +        +A  A   G+  +
Sbjct: 5  LHTHSTAS--DGTDTPAELVRNAAAAGLDVVALTDHDTVGG----YAEATRALPSGLTLV 58

Query: 71 IGCQLD 76
           G +L 
Sbjct: 59 TGAELS 64


>gi|320353885|ref|YP_004195224.1| PHP domain-containing protein [Desulfobulbus propionicus DSM
          2032]
 gi|320122387|gb|ADW17933.1| PHP domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 218

 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS +S  +GAL  +  + ++      AIAITD 
Sbjct: 4  LHSHSFFS--DGALVPSEHVRRVEHLGYQAIAITDH 37


>gi|327400305|ref|YP_004341144.1| PHP domain-containing protein [Archaeoglobus veneficus SNP6]
 gi|327315813|gb|AEA46429.1| PHP domain protein [Archaeoglobus veneficus SNP6]
          Length = 209

 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L +HS+YS  +G  ++  I+ K    +   IAITD 
Sbjct: 4  LHIHSAYS--DGQGTIEEIVRKAKERRIKVIAITDH 37


>gi|156937832|ref|YP_001435628.1| phosphotransferase domain-containing protein [Ignicoccus
          hospitalis KIN4/I]
 gi|156566816|gb|ABU82221.1| PHP C-terminal domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 225

 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII-- 71
          L VH++YS  +G   +  +L+         IAITD N    +L  S+     G+  ++  
Sbjct: 8  LHVHTTYS--DGLDPVEVVLEAALEKGLDVIAITDHNTFKGSLAASKVIKEKGLDLVLVY 65

Query: 72 GCQLD 76
          G ++ 
Sbjct: 66 GNEVR 70


>gi|325294733|ref|YP_004281247.1| PHP domain protein [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065181|gb|ADY73188.1| PHP domain protein [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 574

 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +G  ++  I  K        IAITD 
Sbjct: 338 LHIHSNWS--DGVSTIEEIALKALKMGYKYIAITDH 371


>gi|116754615|ref|YP_843733.1| phosphotransferase domain-containing protein [Methanosaeta
           thermophila PT]
 gi|116666066|gb|ABK15093.1| PHP C-terminal domain protein [Methanosaeta thermophila PT]
          Length = 588

 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS++S  +G  S+  ++    +     IAITD 
Sbjct: 358 LHVHSTWS--DGVGSIEEMVSHARSLGYEYIAITDH 391


>gi|113866831|ref|YP_725320.1| hypothetical protein H16_A0805 [Ralstonia eutropha H16]
 gi|113525607|emb|CAJ91952.1| conserved hypothetical protein [Ralstonia eutropha H16]
          Length = 122

 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KGVG  TAR+I++      P+    D   RV    +  + +  L  AG
Sbjct: 43  ALTSVKGVGAATARNIIDERNKRGPYKDAADLAERV--SGIGPKSVAKLQDAG 93


>gi|239994451|ref|ZP_04714975.1| PHP domain protein [Alteromonas macleodii ATCC 27126]
          Length = 89

 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
          L  H+ +S  +G L+   ++ +    Q  A+A+TD + +    E  
Sbjct: 5  LHSHTKFS--DGHLTPEELILRAHTMQVDALAVTDHDTVAGLEEAH 48


>gi|297562764|ref|YP_003681738.1| PHP domain protein [Nocardiopsis dassonvillei subsp. dassonvillei
          DSM 43111]
 gi|296847212|gb|ADH69232.1| PHP domain protein [Nocardiopsis dassonvillei subsp. dassonvillei
          DSM 43111]
          Length = 291

 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 7/67 (10%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA--GIQPII 71
          L  HS  S+ +G  +   +++   A     +A+TD + +    E    A     G   + 
Sbjct: 6  LHAHS--SVSDGTDTPAEVVEHAVAAGLDVLALTDHDTVGGIGE---AAQNLPPGFTLVP 60

Query: 72 GCQLDID 78
          G +L   
Sbjct: 61 GMELSCA 67


>gi|288553661|ref|YP_003425596.1| hypothetical protein BpOF4_03190 [Bacillus pseudofirmus OF4]
 gi|288544821|gb|ADC48704.1| hypothetical protein BpOF4_03190 [Bacillus pseudofirmus OF4]
          Length = 571

 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     IAITD 
Sbjct: 338 LHMHTTWS--DGANSIQEMVKAAQARGYDYIAITDH 371


>gi|307717346|gb|ADN88726.1| DNA polymerase III [Listeria innocua]
 gi|307717356|gb|ADN88731.1| DNA polymerase III [Listeria innocua]
 gi|307717358|gb|ADN88732.1| DNA polymerase III [Listeria innocua]
 gi|307717360|gb|ADN88733.1| DNA polymerase III [Listeria innocua]
 gi|307717374|gb|ADN88740.1| DNA polymerase III [Listeria innocua]
 gi|307717388|gb|ADN88747.1| DNA polymerase III [Listeria innocua]
          Length = 231

 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++     N  M               +   T  G + L +L++   + +   +  RI  
Sbjct: 165 DIEFHDSLNDYMGEGDAYKRARPFHATIYAQTDVGLKNLFKLITMSNI-NYFYRVPRIPR 223

Query: 134 SWLQE 138
           S L++
Sbjct: 224 SQLKK 228


>gi|307717344|gb|ADN88725.1| DNA polymerase III [Listeria innocua]
 gi|307717350|gb|ADN88728.1| DNA polymerase III [Listeria innocua]
 gi|307717352|gb|ADN88729.1| DNA polymerase III [Listeria innocua]
 gi|307717386|gb|ADN88746.1| DNA polymerase III [Listeria innocua]
          Length = 231

 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++     N  M               +   T  G + L +L++   + +   +  RI  
Sbjct: 165 DIEFHDSLNDYMGEGDAYKRARPFHATIYAQTDVGLKNLFKLITMSNI-NYFYRVPRIPR 223

Query: 134 SWLQE 138
           S L++
Sbjct: 224 SQLKK 228


>gi|158521514|ref|YP_001529384.1| phosphotransferase domain-containing protein [Desulfococcus
           oleovorans Hxd3]
 gi|158510340|gb|ABW67307.1| PHP domain protein [Desulfococcus oleovorans Hxd3]
          Length = 294

 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 79/219 (36%), Gaps = 22/219 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L VHS+ S  +G L+   I+ K       A++ITD + +       + A  A ++ + G 
Sbjct: 11  LHVHSTAS--DGTLTPLEIVKKSEQAGLAALSITDHDTVAGCRPVLEAALPASLKFLTGV 68

Query: 74  QLDID-MQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
           ++            +     +        L     G +RL           + +++ +I 
Sbjct: 69  EISAAYPASCSLSGSLHVLGYDIDIHDTAL---NHGLERL--------QTARNQRTPKI- 116

Query: 133 LSWLQEIGTEGLIMLTGGSS--GPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           L  L  +G +  +  T   +  G + RA     +  A   + + ++ F DR Y+   +  
Sbjct: 117 LEQLNRLGMDISMAETAAFAGGGQVGRAHIA-QAMKARGVVRSIREAF-DR-YLGKNKPA 173

Query: 191 GYDRYRE--SQVVQLAYTHELPLVATNNSLFLSEEDYEA 227
             D+ R    + + L        V  +  L  + +D   
Sbjct: 174 YVDKERIPCDRAIALIRQAGGVAVLAHPFLVDTPDDKAL 212


>gi|124267941|ref|YP_001021945.1| hypothetical protein Mpe_A2756 [Methylibium petroleiphilum PM1]
 gi|124260716|gb|ABM95710.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 287

 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 2/95 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G L    +  +   +     A+TD + +         A A G+  + G 
Sbjct: 10  LHCHSNVS--DGTLEPEALAARAQTNGVELWALTDHDEVGGQRRARDAALALGLPYLTGT 67

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           ++ +                     +  L +T  G
Sbjct: 68  EISVSFAGVTVHIVGLGFEADDAALVAGLAATRGG 102


>gi|291279178|ref|YP_003496013.1| hypothetical protein DEFDS_0779 [Deferribacter desulfuricans SSM1]
 gi|290753880|dbj|BAI80257.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 220

 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 78/241 (32%), Gaps = 62/241 (25%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT----------NNLFSALEFSQ 60
           +  L  H+++S  +G L       +        IAITD           +NL   L+F +
Sbjct: 3   YADLHTHTTFS--DGVLIPAESARRAKTVGYSGIAITDHADSSNFQLIISNL---LKFKE 57

Query: 61  K--ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
           +  + +   + IIG +L   +   ++              +  L                
Sbjct: 58  EFNSFSEDFKVIIGVELTHVLPSQIEK-------------LTFL---------------- 88

Query: 119 MYLLDQGKQSVRICLSWLQEIGTEG--LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
                +G   V +    + E   EG     +              +   ++++ +   K 
Sbjct: 89  --SRKEGADIVVVHGETIVEPVEEGTNAAAIDACVD------VLAHPGLISDELVKKAKD 140

Query: 177 LFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAH 236
              + +Y+ +   +G+     + V +LA  +   LV  N+  F +  DY +  ++     
Sbjct: 141 ---NNVYLEITTRKGH-SLTNAHVARLALKYGTNLVINND--FHAPGDYFSLKMIENCLK 194

Query: 237 S 237
            
Sbjct: 195 G 195


>gi|20090155|ref|NP_616230.1| hypothetical protein MA1291 [Methanosarcina acetivorans C2A]
 gi|19915139|gb|AAM04710.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 218

 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 15/73 (20%)

Query: 14 LQVHSSYS---LLEGALSLNNILDKIAADQQPAIAIT---DTNNLFSALEFSQKAC---- 63
          L  H+ +S    L      + ++         A+AIT   D  NL   LE ++KA     
Sbjct: 7  LHTHTIFSDGEFL-----PSELVRHAVLHGYEAVAITDHADHTNLEWLLEAAKKAKYLEE 61

Query: 64 AAGIQPIIGCQLD 76
             I+ + G +L 
Sbjct: 62 EWDIRVLSGVELT 74


>gi|320161755|ref|YP_004174980.1| hypothetical protein ANT_23540 [Anaerolinea thermophila UNI-1]
 gi|319995609|dbj|BAJ64380.1| hypothetical protein ANT_23540 [Anaerolinea thermophila UNI-1]
          Length = 251

 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAA--DQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           L +H+ YS  +G  S+  +L  +         IAITD +++  ALE   +A A  ++ I 
Sbjct: 6   LHIHTIYSY-DGTCSVPAVLKHVKTQTL-LDVIAITDHDSIRGALEALDRASAYHLEVIP 63

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           GC++       L +  +   P        +L
Sbjct: 64  GCEVSTRDGHVLALFIEKPIPPHLSLKETVL 94


>gi|254388914|ref|ZP_05004145.1| PHP C-terminal domain-containing protein [Streptomyces
          clavuligerus ATCC 27064]
 gi|294814851|ref|ZP_06773494.1| PHP domain-containing protein [Streptomyces clavuligerus ATCC
          27064]
 gi|326443228|ref|ZP_08217962.1| hypothetical protein SclaA2_19283 [Streptomyces clavuligerus ATCC
          27064]
 gi|197702632|gb|EDY48444.1| PHP C-terminal domain-containing protein [Streptomyces
          clavuligerus ATCC 27064]
 gi|294327450|gb|EFG09093.1| PHP domain-containing protein [Streptomyces clavuligerus ATCC
          27064]
          Length = 287

 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++   AA     +A+TD +      E    A   G+  + G 
Sbjct: 5  LHTHSTAS--DGTDTPAELVRNAAAAGLDVVALTDHDTTRGHAEAI-AALPEGLTLVTGA 61

Query: 74 QLDIDMQD 81
          +L   +  
Sbjct: 62 ELSCALDG 69


>gi|324999668|ref|ZP_08120780.1| hypothetical protein PseP1_12910 [Pseudonocardia sp. P1]
          Length = 289

 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 9/66 (13%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS---ALEFSQKACAAGIQPI 70
          L  HS+ S  +G  +   ++    A     +AITD +       A+     A  AG+  +
Sbjct: 6  LHAHSTAS--DGTDTPAELVRAAGAAGLDVVAITDHDTTHGWDDAV----AALPAGLSLV 59

Query: 71 IGCQLD 76
           G +  
Sbjct: 60 RGAEFS 65


>gi|189219139|ref|YP_001939780.1| Metal-dependent phosphoesterase (PHP family) [Methylacidiphilum
          infernorum V4]
 gi|189185997|gb|ACD83182.1| Metal-dependent phosphoesterase (PHP family) [Methylacidiphilum
          infernorum V4]
          Length = 268

 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 1/41 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
            HS +S  +G      ++           A+TD N     
Sbjct: 39 HCHSRFSA-DGVSEPEEMVRVAKRKGLNGFALTDHNTSAGI 78


>gi|307717400|gb|ADN88753.1| DNA polymerase III [Listeria seeligeri]
          Length = 231

 Score = 52.1 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +D     N  M               +   TA G + L +L++   + +   +  RI  
Sbjct: 165 DIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYFYRVPRIPR 223

Query: 134 SWLQEI 139
           S L+++
Sbjct: 224 SQLKKL 229


>gi|322369142|ref|ZP_08043707.1| PHP domain protein [Haladaptatus paucihalophilus DX253]
 gi|320550874|gb|EFW92523.1| PHP domain protein [Haladaptatus paucihalophilus DX253]
          Length = 228

 Score = 52.1 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          V L  HS+ S  +G   +  +L++  A    AIA+TD + + ++L+ ++ A   G+  I 
Sbjct: 4  VELHCHSALS-HDGRDPVELLLEQAKAVDLDAIAVTDHDEIDASLKAAELAPEYGLVGIP 62

Query: 72 GCQLD 76
          G ++ 
Sbjct: 63 GMEIT 67


>gi|86158909|ref|YP_465694.1| phosphoesterase, PHP-like [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775420|gb|ABC82257.1| phosphoesterase, PHP-like protein [Anaeromyxobacter dehalogenans
          2CP-C]
          Length = 255

 Score = 52.1 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 7/71 (9%)

Query: 14 LQVHSSYSLLEG-ALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPI 70
          L VHS ++   G AL+   ++ +        +A TD + L     +     A   G+  +
Sbjct: 5  LHVHSHHT--RGCALAPREVVRRAREAGLDGVAFTDHDTLEGLEEIRA--AAREEGLLAL 60

Query: 71 IGCQLDIDMQD 81
           G ++  D   
Sbjct: 61 CGVEVTTDRGH 71


>gi|238026543|ref|YP_002910774.1| hypothetical protein bglu_1g08870 [Burkholderia glumae BGR1]
 gi|237875737|gb|ACR28070.1| Hypothetical protein bglu_1g08870 [Burkholderia glumae BGR1]
          Length = 107

 Score = 52.1 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV---DSKKLNRRVLESL 885
           +L  IKG+G   A+ I++   A  P+    D   RV     K + R V E L
Sbjct: 31  ALRGIKGIGVAKAQAIVDERNAHGPYKDAADLARRVKGIGPKSVGRLVSEGL 82


>gi|307717410|gb|ADN88758.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis]
 gi|307717414|gb|ADN88760.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis]
 gi|307717416|gb|ADN88761.1| DNA polymerase III [Listeria ivanovii subsp. londoniensis]
          Length = 231

 Score = 52.1 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +D     N  M               +   TA G + L +L++   + +   +  RI  
Sbjct: 165 DIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYFYRVPRIPR 223

Query: 134 SWLQEI 139
           S L+++
Sbjct: 224 SQLKKL 229


>gi|307717332|gb|ADN88719.1| DNA polymerase III [Listeria seeligeri]
          Length = 231

 Score = 52.1 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +D     N  M               +   TA G + L +L++   + +   +  RI  
Sbjct: 165 DIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYFYRVPRIPR 223

Query: 134 SWLQEI 139
           S L+++
Sbjct: 224 SQLKKL 229


>gi|294495750|ref|YP_003542243.1| PHP domain protein [Methanohalophilus mahii DSM 5219]
 gi|292666749|gb|ADE36598.1| PHP domain protein [Methanohalophilus mahii DSM 5219]
          Length = 570

 Score = 52.1 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VH+SYS  +G  SLN+++ +        I ITD 
Sbjct: 342 LHVHTSYS--DGTDSLNSMIAQADKLGYEYIGITDH 375


>gi|167749579|ref|ZP_02421706.1| hypothetical protein EUBSIR_00537 [Eubacterium siraeum DSM 15702]
 gi|167657433|gb|EDS01563.1| hypothetical protein EUBSIR_00537 [Eubacterium siraeum DSM 15702]
          Length = 281

 Score = 52.1 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 20/76 (26%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------------FS-----AL 56
          L  H++ S  +G+L L   + +         AITD + L            +      A+
Sbjct: 5  LHCHTTMS--DGSLGLEETIAQAKRYGIDYFAITDHDTLSSSSRAVVLGERYGVNVIPAV 62

Query: 57 EFSQKACAAGIQP-II 71
          EFS      G +  II
Sbjct: 63 EFSTYDSKHGTKAHII 78


>gi|21223530|ref|NP_629309.1| hypothetical protein SCO5161 [Streptomyces coelicolor A3(2)]
 gi|256785363|ref|ZP_05523794.1| hypothetical protein SlivT_12811 [Streptomyces lividans TK24]
 gi|289769259|ref|ZP_06528637.1| PHP domain-containing protein [Streptomyces lividans TK24]
 gi|9714446|emb|CAC01362.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
 gi|289699458|gb|EFD66887.1| PHP domain-containing protein [Streptomyces lividans TK24]
          Length = 285

 Score = 52.1 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++ K AA     +A+TD +      E    A   G+  + G 
Sbjct: 5  LHTHSTAS--DGTDTPAQLVRKAAATGLDVVALTDHDTTRGHAEA-VAALPEGLTLVTGA 61

Query: 74 QLDIDMQD 81
          +L   +  
Sbjct: 62 ELSCRLDG 69


>gi|328884854|emb|CCA58093.1| Predicted metal-dependent phosphoesterases [Streptomyces
          venezuelae ATCC 10712]
          Length = 304

 Score = 52.1 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  S   ++   AA     +A+TD +      E  +     G+  + G 
Sbjct: 21 LHTHSTAS--DGTDSPAELVRNAAAAGLDVVALTDHDTTRGHAEAIEALPE-GLTLVTGA 77

Query: 74 QLD 76
          +L 
Sbjct: 78 ELS 80


>gi|187923805|ref|YP_001895447.1| DNA uptake protein, ComEA-like protein [Burkholderia phytofirmans
           PsJN]
 gi|187714999|gb|ACD16223.1| putative DNA uptake protein, ComEA-like protein [Burkholderia
           phytofirmans PsJN]
          Length = 196

 Score = 52.1 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KG+G   A+ I++    + PF   +D  +RV  K +  + + +L  AG
Sbjct: 33  ALESVKGIGPVHAKAIIDERTKNGPFKDADDLATRV--KGIGTKSVTNLEAAG 83


>gi|21228391|ref|NP_634313.1| hypothetical protein MM_2289 [Methanosarcina mazei Go1]
 gi|20906864|gb|AAM31985.1| hypothetical protein MM_2289 [Methanosarcina mazei Go1]
          Length = 214

 Score = 52.1 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 70/232 (30%), Gaps = 51/232 (21%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT---NNLFSALEFSQKAC----AAG 66
           L  H+ +S  +G L  + ++ +       AIA+TD     NL   L+ ++KA        
Sbjct: 4   LHTHTIFS--DGELIPSELVRRAVIHGYEAIALTDHADYTNLEQLLDAAKKAKYLEEEWD 61

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           I+ + G +L        K+    K        IV+                         
Sbjct: 62  IRVLSGVELTHVPP--RKIAPMAKKAKELGAEIVV------------------------- 94

Query: 127 QSVRICLSWLQEIGTEG-LIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
               +    + E   +G            I       S +              + +++ 
Sbjct: 95  ----VHGETISEPVAQGTNAASAACEYVDILAHPGLISEEDVRTAAE-------NNVFLE 143

Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
           L    G++R     V +LA      LV   ++   + E+    +  + +A  
Sbjct: 144 LTARNGHNR-TNGHVARLALEFGATLVVNTDT--HAPENLITDETALKIAMG 192


>gi|116626955|ref|YP_829111.1| phosphotransferase domain-containing protein [Candidatus
          Solibacter usitatus Ellin6076]
 gi|116230117|gb|ABJ88826.1| PHP C-terminal domain protein [Candidatus Solibacter usitatus
          Ellin6076]
          Length = 273

 Score = 52.1 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 10/67 (14%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA----AGIQP 69
          L  H++ S  +G  S   ++++        + ITD +      +   +ACA    AG++ 
Sbjct: 4  LHSHTNES--DGTCSPAQLIEEAVRVGVKTLGITDHDTF----KGYDQACAHAAPAGVEL 57

Query: 70 IIGCQLD 76
          + G +L 
Sbjct: 58 VCGIELS 64


>gi|320101815|ref|YP_004177406.1| Helix-hairpin-helix DNA-binding class 1 [Isosphaera pallida ATCC
           43644]
 gi|319749097|gb|ADV60857.1| Helix-hairpin-helix DNA-binding class 1 [Isosphaera pallida ATCC
           43644]
          Length = 214

 Score = 52.1 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  + G+G   A+ I+      PF SLED   RV  + +  R +E L
Sbjct: 148 LQGLPGIGPVLAQRILAERVRGPFQSLEDLAERV--RGIGPRTVERL 192


>gi|148656462|ref|YP_001276667.1| phosphotransferase domain-containing protein [Roseiflexus sp. RS-1]
 gi|148568572|gb|ABQ90717.1| PHP C-terminal domain protein [Roseiflexus sp. RS-1]
          Length = 241

 Score = 52.1 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            VH+ YS  +G  S+  +L+         +AITD + +  ALE  + A    ++ I+G +
Sbjct: 10  HVHTRYS--DGHSSVAQVLEYADHIGLHVVAITDHDTIDGALEARRMARGFNVEVIVGEE 67

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           +       L +  +   P        +  +  +G
Sbjct: 68  VSTADGHLLVLFLERALPPGRPAPETIAAAHEQG 101


>gi|319779408|ref|YP_004130321.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Taylorella equigenitalis MCE9]
 gi|317109432|gb|ADU92178.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Taylorella equigenitalis MCE9]
          Length = 278

 Score = 52.1 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G+ S + +     +      ++TD + L      S+KA   GI+ + G 
Sbjct: 6  LHCHSTAS--DGSYSPDELAVIAKSKNVDIWSLTDHDVLSGQERASKKAQELGIKYVSGV 63

Query: 74 QLD 76
          ++ 
Sbjct: 64 EIS 66


>gi|271967158|ref|YP_003341354.1| hypothetical protein Sros_5876 [Streptosporangium roseum DSM 43021]
 gi|270510333|gb|ACZ88611.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
          Length = 401

 Score = 52.1 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ----KACAAGIQP 69
           L  H+ +S  +G+LS++ +    A      +A+TD N +             A  A I  
Sbjct: 154 LHTHTVHS--DGSLSVSELACLAADRGLDFLAVTDHNTVS----HHTELPAAATYAAITL 207

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
           I G ++  D+       + G   F   P +
Sbjct: 208 IPGQEVTTDLGHANAFGDIGWIDFRDSPDL 237


>gi|197286071|ref|YP_002151943.1| metal-dependent phosphoesterase [Proteus mirabilis HI4320]
 gi|227356587|ref|ZP_03840974.1| metal-dependent phosphoesterase [Proteus mirabilis ATCC 29906]
 gi|194683558|emb|CAR44422.1| putative metal-dependent phosphoesterase [Proteus mirabilis HI4320]
 gi|227163343|gb|EEI48270.1| metal-dependent phosphoesterase [Proteus mirabilis ATCC 29906]
          Length = 274

 Score = 52.1 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 78/242 (32%), Gaps = 61/242 (25%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------------------ 52
           +  L VH+++S  +G   + ++L+    +    IAITD +                    
Sbjct: 3   YADLHVHTNHS--DGVCEIKDVLENAFRNGIKTIAITDHDTTNHYDEIYREGERLGLNIV 60

Query: 53  ----FSALEF--SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTA 106
                S  +F   +K        ++G  L+    +  K+ +            ++L    
Sbjct: 61  KGVEMSCYDFDVYKKVH------VVGLWLNEKTPNVDKLCDNTLNCRDQFHRELILSLNQ 114

Query: 107 EGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
           +GY                     IC    ++     ++         I +A      + 
Sbjct: 115 QGY--------------------DICYEDAKKFSKYNIV-----FKMNIFQALREKYPEE 149

Query: 167 AEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYE 226
             K    +K+LFG +  +     +      +  +  +     +P++A +  ++ + ++ E
Sbjct: 150 MTK--ERYKQLFGSKTKIE-TDLKMGYIPVDEGIAAILQDGGIPILA-HPCVYDNYDEIE 205

Query: 227 AH 228
            +
Sbjct: 206 KY 207


>gi|222053564|ref|YP_002535926.1| PHP domain protein [Geobacter sp. FRC-32]
 gi|221562853|gb|ACM18825.1| PHP domain protein [Geobacter sp. FRC-32]
          Length = 236

 Score = 52.1 bits (123), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 23/83 (27%)

Query: 15 QVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTN-NL--------FSALEFS- 59
            H+     +YS      ++N + +  A     AIA+TD    +        F A+ F  
Sbjct: 8  HTHTIASGHAYS------TVNELAEAAARKGLKAIALTDHGPAMPGGPHLYHFGAIRFIP 61

Query: 60 QKACAAGIQPIIGCQLDIDMQDN 82
          ++   AG++ + G + +I  +  
Sbjct: 62 REI--AGVRILCGTEANILNEHG 82


>gi|325522913|gb|EGD01364.1| error-prone DNA polymerase [Burkholderia sp. TJI49]
          Length = 86

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +V+S+Q   T  G  + ++T  +          P
Sbjct: 1    IVISRQMPGTSNG--VMFMTLEDETGCVNVIVRP 32


>gi|289523831|ref|ZP_06440685.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502929|gb|EFD24093.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 197

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VHS+ S  +G LS ++++ +        +++TD +      EF +      +  + G 
Sbjct: 5  LHVHSTAS--DGTLSPSDVVIRAKKRAISLLSLTDHDTTDGLQEFEESCRKHNLPGLPGI 62

Query: 74 QLDIDMQDNLKMTNQG 89
          +L  +  D++ +   G
Sbjct: 63 ELSAEYYDDVHILGYG 78


>gi|283457685|ref|YP_003362270.1| putative metal-dependent phosphoesterase [Rothia mucilaginosa
           DY-18]
 gi|283133685|dbj|BAI64450.1| predicted metal-dependent phosphoesterase [Rothia mucilaginosa
           DY-18]
          Length = 343

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS+  + +G  SL  ++  IA       A+TD +      + +Q A   G+  + G 
Sbjct: 57  LHIHSA--ISDGTQSLIELVPLIARAGLAGFALTDHDTTAGWAQAAQLAGEYGLDFLPGA 114

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           +         + T+           ++  
Sbjct: 115 EFSC----RYRYTDGEDRARTKTIHLLAY 139


>gi|255326973|ref|ZP_05368049.1| PHP domain protein [Rothia mucilaginosa ATCC 25296]
 gi|255296190|gb|EET75531.1| PHP domain protein [Rothia mucilaginosa ATCC 25296]
          Length = 322

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS+  + +G  SL  ++  IA       A+TD +      + +Q A   G+  + G 
Sbjct: 36  LHIHSA--ISDGTQSLIELVPLIARAGLAGFALTDHDTTAGWAQAAQLAGEYGLDFLPGA 93

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           +         + T+           ++  
Sbjct: 94  EFSC----RYRYTDGEDRARTKTIHLLAY 118


>gi|283853070|ref|ZP_06370326.1| PHP domain protein [Desulfovibrio sp. FW1012B]
 gi|283571537|gb|EFC19541.1| PHP domain protein [Desulfovibrio sp. FW1012B]
          Length = 221

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+++S  +G L  + +  +       A+A+TD 
Sbjct: 4  LHTHTTFS--DGVLIPSELARRATKAGYRAMAMTDH 37


>gi|256390916|ref|YP_003112480.1| PHP domain-containing protein [Catenulispora acidiphila DSM 44928]
 gi|256357142|gb|ACU70639.1| PHP domain protein [Catenulispora acidiphila DSM 44928]
          Length = 407

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 6/70 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL--FSALEFSQKACAAGIQPII 71
           L  H+ +S  +G LS+  + +  A      +A+TD N +  +  LE       +G+  I 
Sbjct: 149 LHAHTDHS--DGTLSVGALAELAAETGLDFLAVTDHNTISHYPLLEKHSA--TSGVTLIP 204

Query: 72  GCQLDIDMQD 81
           G ++  D+  
Sbjct: 205 GQEVTTDLGH 214


>gi|220916573|ref|YP_002491877.1| PHP domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954427|gb|ACL64811.1| PHP domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 266

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 14 LQVHSSYSLLEG-ALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPI 70
          L VHS ++   G AL+  +++ +        +A TD + L     +     A   G+  +
Sbjct: 5  LHVHSHHT--RGCALAPRDVVRRAREAGLDGVAFTDHDTLEGLEEIRA--AARDEGLVAL 60

Query: 71 IGCQLDIDMQD 81
           G ++  D   
Sbjct: 61 CGVEVTTDRGH 71


>gi|154149763|ref|YP_001403381.1| phosphotransferase domain-containing protein [Candidatus
          Methanoregula boonei 6A8]
 gi|153998315|gb|ABS54738.1| PHP C-terminal domain protein [Methanoregula boonei 6A8]
          Length = 225

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH+++S  +G  S+  IL +  A     IAITD + +  A +    A    +  I G 
Sbjct: 6  LHVHTNFS-KDGESSVEEILRQAEAVGLDVIAITDHDCVDGAKKAL--AFKTSVLVIPGI 62

Query: 74 QLD 76
          ++ 
Sbjct: 63 EVS 65


>gi|170727253|ref|YP_001761279.1| phosphotransferase domain-containing protein [Shewanella woodyi
          ATCC 51908]
 gi|169812600|gb|ACA87184.1| PHP domain protein [Shewanella woodyi ATCC 51908]
          Length = 287

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE--FSQKACAAGIQPII 71
          L  H++ S  +G L+ + ++++   +     AITD +      E      + A  ++ I 
Sbjct: 10 LHSHTTAS--DGMLTPSELVERAIGNGVEMFAITDHDTTAGLAEAHAYNNSHATPLRLIN 67

Query: 72 GCQLDIDMQDN 82
          G ++     ++
Sbjct: 68 GVEVSTRWHNH 78


>gi|313904658|ref|ZP_07838032.1| histidinol phosphate phosphatase HisJ family [Eubacterium
          cellulosolvens 6]
 gi|313470451|gb|EFR65779.1| histidinol phosphate phosphatase HisJ family [Eubacterium
          cellulosolvens 6]
          Length = 266

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ YS  +G      +  +        +A TD 
Sbjct: 7  HTHTHYSF-DGMGDPEEMCRRAVELGLQELAFTDH 40


>gi|156743084|ref|YP_001433213.1| phosphotransferase domain-containing protein [Roseiflexus
          castenholzii DSM 13941]
 gi|156234412|gb|ABU59195.1| PHP domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 240

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
           +H+ YS  +G  S+  +L+         IAITD + +  ALE  + A    ++ IIG +
Sbjct: 10 HIHTRYS--DGHSSVAQVLEYADHIGLRVIAITDHDTIDGALEAQRMARGFDVEVIIGEE 67

Query: 75 LDIDMQD 81
          +      
Sbjct: 68 VSTTDGH 74


>gi|311279825|ref|YP_003942056.1| PHP domain-containing protein [Enterobacter cloacae SCF1]
 gi|308749020|gb|ADO48772.1| PHP domain protein [Enterobacter cloacae SCF1]
          Length = 293

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ--PII 71
          L  H++ S  +G L+   ++ +  A +   +AITD +++ +      +   AG+    I 
Sbjct: 12 LHSHTTAS--DGCLTPEELVHRALAMRVGTLAITDHDSVAAIPAARAEIARAGLPLTLIS 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GTEISTVWENH 80


>gi|126180240|ref|YP_001048205.1| phosphotransferase domain-containing protein [Methanoculleus
          marisnigri JR1]
 gi|125863034|gb|ABN58223.1| PHP C-terminal domain protein [Methanoculleus marisnigri JR1]
          Length = 221

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL 56
          L VH+ +S  +G  S+  IL +  A    AIAITD + +  AL
Sbjct: 6  LHVHTRHS-KDGESSVEEILRRAEAVGLDAIAITDHDTVEGAL 47


>gi|83718855|ref|YP_442182.1| hypothetical protein BTH_I1645 [Burkholderia thailandensis E264]
 gi|167581060|ref|ZP_02373934.1| hypothetical protein BthaT_23137 [Burkholderia thailandensis TXDOH]
 gi|167619139|ref|ZP_02387770.1| hypothetical protein BthaB_22741 [Burkholderia thailandensis Bt4]
 gi|257138371|ref|ZP_05586633.1| competence protein ComE [Burkholderia thailandensis E264]
 gi|83652680|gb|ABC36743.1| conserved hypothetical protein [Burkholderia thailandensis E264]
          Length = 105

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  I+G+G   A+ I++   A  PF    D   RV  K +  + +E L
Sbjct: 31  ALRGIRGIGPAKAKAIVDERSAHGPFKDAADLSRRV--KGMGGKTVERL 77


>gi|323691805|ref|ZP_08106062.1| PHP domain-containing protein [Clostridium symbiosum WAL-14673]
 gi|323504171|gb|EGB19976.1| PHP domain-containing protein [Clostridium symbiosum WAL-14673]
          Length = 285

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 11 FVHLQVHSSYSLLEGALSLNNIL-DKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
          F+ L VHS  S  +G L+   ++ +        A A+TD +      E  + A   G++ 
Sbjct: 3  FIDLHVHS--SASDGTLAPG-LVTELALEKGLYAYALTDHDTTDGIDEAVRAAAGTGLEV 59

Query: 70 IIGCQLDIDMQDN 82
          I G +L    +  
Sbjct: 60 IPGTELSCIYEGK 72


>gi|150019281|ref|YP_001311535.1| phosphotransferase domain-containing protein [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905746|gb|ABR36579.1| PHP C-terminal domain protein [Clostridium beijerinckii NCIMB 8052]
          Length = 230

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 5/97 (5%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + K   F    +HS++S  +G  +   ++      +   I+ITD N+     E       
Sbjct: 1   MYKKGDF---HIHSTFS--DGKCTPRELVILSKKREVDIISITDHNSTSGLDEAVMAGEN 55

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
            G++ I G +L      +                +++
Sbjct: 56  LGVRVIPGVELSTKYNSSRVHVLGYFKDDSYKNELLV 92


>gi|15791255|ref|NP_281079.1| hypothetical protein VNG2493C [Halobacterium sp. NRC-1]
 gi|169237013|ref|YP_001690213.1| hypothetical protein OE4492F [Halobacterium salinarum R1]
 gi|10581888|gb|AAG20559.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167728079|emb|CAP14867.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 267

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 12 VH--LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
          VH  L VH++ S  +G L+++ + D        A+AITD + L  AL+         I  
Sbjct: 2  VHADLHVHTTNS--DGTLTIDAVPDAAHDAGVTAVAITDHDRLHPALDAPVTVRD-DITV 58

Query: 70 IIGCQLDIDMQ 80
          I G +L +D  
Sbjct: 59 IHGIELRVDTG 69


>gi|163848545|ref|YP_001636589.1| phosphotransferase domain-containing protein [Chloroflexus
          aurantiacus J-10-fl]
 gi|222526478|ref|YP_002570949.1| PHP domain-containing protein [Chloroflexus sp. Y-400-fl]
 gi|163669834|gb|ABY36200.1| PHP domain protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450357|gb|ACM54623.1| PHP domain protein [Chloroflexus sp. Y-400-fl]
          Length = 235

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 14 LQVHSSYSLLEGALSLNN---ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          L +H++ S  +G  S       +          IAITD + L  AL   ++A   GI  I
Sbjct: 10 LHIHTTAS--DGTASPEAVLSYV--ATETDLRVIAITDHDTLRGALYARERASHYGIDVI 65

Query: 71 IGCQLD 76
          +GC++ 
Sbjct: 66 VGCEIS 71


>gi|289522113|ref|ZP_06438967.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504643|gb|EFD25807.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 296

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VHS+ S  +G LS ++++ +        +++TD +      EF +      +  + G 
Sbjct: 5  LHVHSTAS--DGTLSPSDVVIRAKKKAISLLSLTDHDTTDGLQEFEESCRKHNVPGLPGI 62

Query: 74 QLDIDMQDNLKMTNQG 89
          +L  +  D++ +   G
Sbjct: 63 ELSAEYYDDVHILGYG 78


>gi|293606025|ref|ZP_06688390.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Achromobacter piechaudii ATCC 43553]
 gi|292815480|gb|EFF74596.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Achromobacter piechaudii ATCC 43553]
          Length = 291

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  ++ +GAL+  ++  +  A+     A+TD + +    E ++ A   G++   G 
Sbjct: 20 LHCHS--TVSDGALAPADVARRAHANGVDVWALTDHDEIGGLAEAARAAEDLGMRFSTGV 77

Query: 74 QLDIDM 79
          ++ +  
Sbjct: 78 EISVTW 83


>gi|197121779|ref|YP_002133730.1| PHP domain protein [Anaeromyxobacter sp. K]
 gi|196171628|gb|ACG72601.1| PHP domain protein [Anaeromyxobacter sp. K]
          Length = 267

 Score = 51.7 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 14 LQVHSSYSLLEG-ALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPI 70
          L VHS ++   G AL+  +++ +        +A TD + L     +     A   G+  +
Sbjct: 5  LHVHSHHT--RGCALAPRDVVRRAREAGLDGVAFTDHDTLEGLEEIRA--AAREEGLLAL 60

Query: 71 IGCQLDIDMQD 81
           G ++  D   
Sbjct: 61 CGVEVTTDRGH 71


>gi|268317483|ref|YP_003291202.1| PHP domain-containing protein [Rhodothermus marinus DSM 4252]
 gi|262335017|gb|ACY48814.1| PHP domain protein [Rhodothermus marinus DSM 4252]
          Length = 279

 Score = 51.7 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+S S  +G LS   ++ +        +AITD + +    E  Q A    +  I G 
Sbjct: 9  LHLHTSRS--DGRLSPAELVRRAREAGLYCVAITDHDTIDGLEEARQAAARWAMVVIPGV 66

Query: 74 QLDIDMQDN 82
          +L + +++ 
Sbjct: 67 ELSVQVEEE 75


>gi|150390915|ref|YP_001320964.1| phosphotransferase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149950777|gb|ABR49305.1| PHP C-terminal domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 575

 Score = 51.7 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VHS YS  +G  S+  I+     +    I I+D 
Sbjct: 342 HVHSHYS--DGVNSIEEIVQAAIKEGFQYIGISDH 374


>gi|323492458|ref|ZP_08097606.1| hypothetical protein VIBR0546_15516 [Vibrio brasiliensis LMG 20546]
 gi|323313245|gb|EGA66361.1| hypothetical protein VIBR0546_15516 [Vibrio brasiliensis LMG 20546]
          Length = 288

 Score = 51.7 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 81/280 (28%), Gaps = 57/280 (20%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H++ S  +G L  N ++D+  + Q   +AITD + +                ++ I 
Sbjct: 5   LHSHTTAS--DGRLPPNELIDRALSFQLDVLAITDHDTVDGLAPAHHYIKENNLPLKLIN 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV----STAEGYQRL--IEL---------- 115
           G ++    Q+   +   G    P   ++  L+       EG   L    L          
Sbjct: 63  GIEISTVWQNK-DIHIVGLNIDPDSQALNALIEQQKKHREGRAELIASRLEKATREGVLE 121

Query: 116 ----------VSRMY----LLDQGKQSV--RICLSWLQEIGTEGLIMLTGGSSGPIDRAF 159
                     ++R +    L+D        ++   +L      G +  T  S      A 
Sbjct: 122 EVKLIAGEAPITRAHFAKWLVDNQYAKTMQQVFKKYLTR-NNPGYVPPTWCSMKEAVDAI 180

Query: 160 FF----------NSSQVAEKRLLTFKKLF---GDRLYVNL-QRHRGYDRYRESQVVQLAY 205
                           +  K +      F   G    + + Q  +     R   +   A 
Sbjct: 181 HQAGGQAVLAHPGRYDLTAKWVKRLLAAFVEAGGDA-MEIAQPQQAQQERRN--LADYAI 237

Query: 206 THELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDR 245
            +   L+A+  S F     +      + +        KD 
Sbjct: 238 QY--KLLASQGSDFHYPSPWMELGRNLWLPSGVEPVWKDW 275


>gi|317048306|ref|YP_004115954.1| PHP domain-containing protein [Pantoea sp. At-9b]
 gi|316949923|gb|ADU69398.1| PHP domain protein [Pantoea sp. At-9b]
          Length = 301

 Score = 51.7 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 56/170 (32%), Gaps = 26/170 (15%)

Query: 14  LQVHSSYSLL--EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQP 69
           L  H+    L  +G L+   ++ +    +   +AITD + +    E  Q A      ++ 
Sbjct: 19  LHSHT----LASDGVLTPAALVQRAVEMRVGVLAITDHDTVVGVAEAQQTAAELNLPLKV 74

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV-LLVSTAEGYQRLIELVSRMYLLDQGKQS 128
           + G +    + +N ++   G       P +   L       Q     V R  ++ +  + 
Sbjct: 75  LAGLEAS-TLWENHEIHIVGLQVDCQHPRLTQFLAQ-----QHDCR-VQRAQMIGERLER 127

Query: 129 VRICLSWLQ---EIGTEGLIMLTGGSSGPIDRAFFF-NSSQVAEKRLLTF 174
            RI    L     +   G+I     + G   R       +    +    +
Sbjct: 128 ARIP-DALAGAQRLAQGGVI-----TRGHFARYLVEIGKADNLAQVFKNY 171


>gi|148654513|ref|YP_001274718.1| phosphotransferase domain-containing protein [Roseiflexus sp. RS-1]
 gi|148566623|gb|ABQ88768.1| PHP C-terminal domain protein [Roseiflexus sp. RS-1]
          Length = 286

 Score = 51.7 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 26/136 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-AGIQPIIG 72
           L +H++ +      + + ++          IA+TD N   S +   Q+A    GI  I G
Sbjct: 4   LHIHTNATPHHATWTPDTLMAAAVRAGLQVIAVTDHNTTAS-VRAVQEAGGRTGIHVISG 62

Query: 73  CQLDIDMQDNLKMTNQGKT--------PFPTVPSIVLLVS--------TAEGYQRLIELV 116
            ++D       +                 P  PS++ L           A+G QR     
Sbjct: 63  VEIDAGFPAGQRDDRLPFKLWHVLVYGADPEHPSLLALCRSVDERNLADADGLQR----- 117

Query: 117 SRMYLLDQGKQSVRIC 132
              +L+  G +   I 
Sbjct: 118 ---HLIAAGFRLPGID 130


>gi|302524379|ref|ZP_07276721.1| phosphotransferase domain-containing protein [Streptomyces sp.
          AA4]
 gi|302433274|gb|EFL05090.1| phosphotransferase domain-containing protein [Streptomyces sp.
          AA4]
          Length = 290

 Score = 51.7 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          L  HS+ S  +G  S   ++   A      +AITD +    
Sbjct: 8  LHAHSTAS--DGTDSPAELVGAAARAGLDVVAITDHDTTAG 46


>gi|251789772|ref|YP_003004493.1| PHP domain-containing protein [Dickeya zeae Ech1591]
 gi|247538393|gb|ACT07014.1| PHP domain protein [Dickeya zeae Ech1591]
          Length = 290

 Score = 51.7 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI---QPI 70
          L  H++ S  +G L+   ++ +  + +   +AITD +      E  + A    +   + I
Sbjct: 16 LHSHTTAS--DGLLTPTELVQRAVSMRVSVLAITDHDTTAGLDEA-RAAIVQQVLPLRLI 72

Query: 71 IGCQLDIDMQDN 82
           G ++    +++
Sbjct: 73 SGVEISTVWENH 84


>gi|329894514|ref|ZP_08270328.1| putative metal-dependent phosphoesterases (PHP family) [gamma
          proteobacterium IMCC3088]
 gi|328923039|gb|EGG30364.1| putative metal-dependent phosphoesterases (PHP family) [gamma
          proteobacterium IMCC3088]
          Length = 279

 Score = 51.7 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 13/70 (18%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-------AAG 66
          L VHS+ S  +GALS+ ++L++  A     IA+TD + +       + A         A 
Sbjct: 7  LHVHSTCS--DGALSVPDLLERALAADIQTIALTDHDTIKGV----ETAREWLSNNSEAS 60

Query: 67 IQPIIGCQLD 76
          +Q I G +L 
Sbjct: 61 LQLISGTELS 70


>gi|241759417|ref|ZP_04757521.1| PHP domain protein [Neisseria flavescens SK114]
 gi|241320199|gb|EER56532.1| PHP domain protein [Neisseria flavescens SK114]
          Length = 278

 Score = 51.7 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 3/100 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G LS   ++     +    +A+TD ++     E   +A   G+  + G 
Sbjct: 4   LHCHS--TVSDGMLSPTEVVRLARQNGCTLLALTDHDHTGGLAEARTEADTLGLPFVNGV 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG-YQRL 112
           ++ +                       LL    +G  +RL
Sbjct: 62  EISVTWHGRTIHIVGLDFDEHNEALQNLLAEVRKGRLKRL 101


>gi|291336918|gb|ADD96447.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C426]
          Length = 121

 Score = 51.7 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 45/126 (35%), Gaps = 21/126 (16%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGAL---SLNN--------ILDKIAADQQPAIAITDTNNLF 53
           +++ P F      S YSL +  L      +        I+     ++   + + D +++ 
Sbjct: 1   MKQIPLF-----KSHYSLGKSILTLDKPEDSDPSGPDSIISICKENKIKNLYLVD-DSMS 54

Query: 54  SALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLI 113
             L+    +    I    G ++       +K     +    T    ++     +GY+RLI
Sbjct: 55  GFLQGYLNSKDEKINFNFGLRMTFCADIEIK----DEDSRKTNCKFIIFAKNKQGYKRLI 110

Query: 114 ELVSRM 119
           ++ +  
Sbjct: 111 KISTDA 116


>gi|289433342|ref|YP_003463215.1| PHP domain protein [Dehalococcoides sp. GT]
 gi|288947062|gb|ADC74759.1| PHP domain protein [Dehalococcoides sp. GT]
          Length = 287

 Score = 51.7 bits (122), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-GIQPIIG 72
          L +H+  ++ +G  S  NI+ K A      IAI D +NL       Q A     ++ I G
Sbjct: 7  LHIHT--TVSDGVHSPLNIIAKAAKVHMEYIAICDHDNLGGIGLAIQTARKYPKLRVIPG 64

Query: 73 CQLDIDMQDN 82
           ++  D    
Sbjct: 65 VEISTDYSGG 74


>gi|74312364|ref|YP_310783.1| hypothetical protein SSON_1877 [Shigella sonnei Ss046]
 gi|73855841|gb|AAZ88548.1| putative enzyme [Shigella sonnei Ss046]
          Length = 293

 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +N  + +   ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGCLTPEVLVHRAVEMRVGTLAITDHDNTAAIVPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|297616967|ref|YP_003702126.1| PHP domain protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297144804|gb|ADI01561.1| PHP domain protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 348

 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 15/67 (22%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AGIQP 69
           +H+ YS  +G+ S++ +++  A      I ITD N L        +A        G+  
Sbjct: 9  HLHTEYS--DGSGSVDRVVEAAARAGLDFIVITDHNTL--------RAKEEEGYHKGVLV 58

Query: 70 IIGCQLD 76
          ++G +L+
Sbjct: 59 LVGMELN 65


>gi|282165289|ref|YP_003357674.1| putative phosphatase, PHP family [Methanocella paludicola SANAE]
 gi|282157603|dbj|BAI62691.1| putative phosphatase, PHP family [Methanocella paludicola SANAE]
          Length = 220

 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 76/232 (32%), Gaps = 51/232 (21%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT---NNL-FSALEFSQKAC----AA 65
           L  H+ +S  +G L  + ++ +       AIA+TD     NL F  LE ++KA     + 
Sbjct: 5   LHTHTLFS--DGELIPSELVRRAKVAGYQAIALTDHADFTNLDF-LLEGAKKARYLEESY 61

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG 125
            I+ + G +  I       +    +        IV+                   +  + 
Sbjct: 62  DIRVLAGVE--ITHVPPKLIPKLARMAKHAGAEIVV-------------------VHGES 100

Query: 126 KQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                  L+ L     E + +L     G I         + A+           + + + 
Sbjct: 101 PVEPVAPLTNLAAAECEDVDILAHP--GYIT-------EEEAKLAAD-------NGICLE 144

Query: 186 LQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
           +    G++      V ++A      LV   ++   S +D    +  +AVA  
Sbjct: 145 ITARYGHN-VTNGHVARMAKAAGARLVVDTDT--HSPDDLITREKALAVARG 193


>gi|328867600|gb|EGG15982.1| hypothetical protein DFA_09654 [Dictyostelium fasciculatum]
          Length = 434

 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA---AGIQPII 71
             HS YS  +G  +   +++   A+   A+ +TD N +  +L   + A       I+ + 
Sbjct: 93  HCHSVYS--DGMFTPEQLIEWHIANGYNAMVVTDHNTVDGSLAAQKLAREKYNNSIKVLT 150

Query: 72  GCQ 74
           G +
Sbjct: 151 GME 153


>gi|311107032|ref|YP_003979885.1| PHP domain-containing protein [Achromobacter xylosoxidans A8]
 gi|310761721|gb|ADP17170.1| PHP domain protein [Achromobacter xylosoxidans A8]
          Length = 281

 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  ++ +GAL+  ++  +  A+     A+TD + +    E ++ A    +    G 
Sbjct: 10 LHCHS--TVSDGALAPRDVAQRAHANGVDVWALTDHDEVGGLAEAARAARDLDMDFATGV 67

Query: 74 QLDIDM 79
          ++ +  
Sbjct: 68 EISVTW 73


>gi|239929083|ref|ZP_04686036.1| hypothetical protein SghaA1_12736 [Streptomyces ghanaensis ATCC
          14672]
 gi|291437420|ref|ZP_06576810.1| PHP C-terminal domain-containing protein [Streptomyces ghanaensis
          ATCC 14672]
 gi|291340315|gb|EFE67271.1| PHP C-terminal domain-containing protein [Streptomyces ghanaensis
          ATCC 14672]
          Length = 285

 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +  +++ K  A     IA+TD +      E    A  AG+  + G 
Sbjct: 5  LHTHSTAS--DGTDTPADLVRKAGAAGLDVIALTDHDTTRGHAEAL-AALPAGLTLVTGA 61

Query: 74 QLDIDMQD 81
          +L   +  
Sbjct: 62 ELSCRLDG 69


>gi|150400010|ref|YP_001323777.1| phosphotransferase domain-containing protein [Methanococcus
          vannielii SB]
 gi|150012713|gb|ABR55165.1| PHP domain protein [Methanococcus vannielii SB]
          Length = 295

 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 15/83 (18%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALS---------LNN---ILDKIAADQQPAIAITDTNNL 52
          +EK  S   L +H+ YS   G +          +     ++    A+    IA+TD N++
Sbjct: 1  MEKEISRADLHIHTKYS---GMMKYMGLKFPDSVEEPLKVMKYAKANNMDVIAVTDHNSI 57

Query: 53 FSALEFSQKACAAGIQPIIGCQL 75
            ALE  +     GI+ ++G ++
Sbjct: 58 KGALETKKFEKEFGIEVVVGSEI 80


>gi|297626174|ref|YP_003687937.1| Predicted metal-dependent phosphoesterase [Propionibacterium
          freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921939|emb|CBL56499.1| Predicted metal-dependent phosphoesterase [Propionibacterium
          freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 293

 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++ K   D    IA+ D +      E  +     G+  + G 
Sbjct: 5  LHTHSNVS--DGTDTPTALVQKAQRDGLAVIALCDHDTFDGLAEAEEAGRRFGVAVLPGI 62

Query: 74 QLDIDMQD 81
          ++   +  
Sbjct: 63 EISTHVGS 70


>gi|73749384|ref|YP_308623.1| phosphotransferase domain-containing protein [Dehalococcoides sp.
          CBDB1]
 gi|73661100|emb|CAI83707.1| PHP domain N-terminal region family protein [Dehalococcoides sp.
          CBDB1]
          Length = 287

 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-GIQPIIG 72
          L +H+  ++ +G  S  NI+ K A      IAI D +NL       Q A     ++ I G
Sbjct: 7  LHIHT--TVSDGVHSPLNIIAKAAKVHMEYIAICDHDNLGGIGLAIQTARKYPKLRVIPG 64

Query: 73 CQLDIDMQDN 82
           ++  D    
Sbjct: 65 VEISTDYSGG 74


>gi|219850371|ref|YP_002464804.1| PHP domain-containing protein [Chloroflexus aggregans DSM 9485]
 gi|219544630|gb|ACL26368.1| PHP domain protein [Chloroflexus aggregans DSM 9485]
          Length = 235

 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 5/88 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAAD-QQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           L +H++ S  +G  S   +L  +A +     IAITD + L  AL   + A   GI  IIG
Sbjct: 10  LHIHTTAS--DGTASPEAVLSYVAEETDLRVIAITDHDTLEGALVARRLAPHYGIDVIIG 67

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           C++   +   L +    + P P    + 
Sbjct: 68  CEISTAIGHVLALF--IEQPIPAGLDLT 93


>gi|29829645|ref|NP_824279.1| hypothetical protein SAV_3103 [Streptomyces avermitilis MA-4680]
 gi|29606753|dbj|BAC70814.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 288

 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 59/198 (29%), Gaps = 39/198 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA---GIQPI 70
           L  HS+ S  +G  +   ++    A     +A+TD ++         +A AA   G+  +
Sbjct: 5   LHTHSTAS--DGTDTPAELVRNAGAAGLDVVALTDHDST----RGHAQAIAALPEGLTLV 58

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE---------LVSRMYL 121
            G +L     D + M        P  P   LL       + L+          +++++  
Sbjct: 59  TGAELS-CRLDGIGMHMLAYLFDPEEPG--LLAE-----RELVRDDRVPRAQGMITKL-- 108

Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRL--LTFKKLFG 179
             Q      +    +  I  +G    + G              +               G
Sbjct: 109 --QELGVP-VTWEQVARIAGDG----SVGRPHIASALVELGVVESVSDAFTPEWLAD--G 159

Query: 180 DRLYVNLQRHRGYDRYRE 197
            R YV       +D  R 
Sbjct: 160 GRAYVEKHELDPFDAIRL 177


>gi|167841219|ref|ZP_02467903.1| hypothetical protein Bpse38_31385 [Burkholderia thailandensis
           MSMB43]
          Length = 105

 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  I+G+G   A+ I++   A  PF    D   RV  K +  + +E L
Sbjct: 31  ALRGIRGIGPAKAKAIVDERAAHGPFKDAADLAHRV--KGMGGKTVERL 77


>gi|323705039|ref|ZP_08116615.1| PHP domain protein [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535465|gb|EGB25240.1| PHP domain protein [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 570

 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH+ YS  +GA +++ +++         I ITD 
Sbjct: 342 HVHTIYS--DGANTISEMVNAARDCGYKIIGITDH 374


>gi|307717322|gb|ADN88714.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717324|gb|ADN88715.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717408|gb|ADN88757.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717412|gb|ADN88759.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
 gi|307717418|gb|ADN88762.1| DNA polymerase III [Listeria ivanovii subsp. ivanovii]
          Length = 231

 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            ++     N  M               +   TA G + L +L++   + +   +  RI  
Sbjct: 165 DIEYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYFYRVPRIPR 223

Query: 134 SWLQEI 139
           S L+++
Sbjct: 224 SQLKKL 229


>gi|319779321|ref|YP_004130234.1| hypothetical protein TEQUI_1168 [Taylorella equigenitalis MCE9]
 gi|317109345|gb|ADU92091.1| hypothetical protein TEQUI_1168 [Taylorella equigenitalis MCE9]
          Length = 135

 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 839 LAAIKGVGTTTARHIMEASADKP-FDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           L +IKG+G   A  I+EA  +   F S  D   RV    L +  ++SL  AG
Sbjct: 33  LDSIKGIGPKMATLIIEARKNGGNFKSYSDLAERVKGLGLKK--IKSLRIAG 82


>gi|95931013|ref|ZP_01313741.1| PHP-like [Desulfuromonas acetoxidans DSM 684]
 gi|95132909|gb|EAT14580.1| PHP-like [Desulfuromonas acetoxidans DSM 684]
          Length = 243

 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 32/107 (29%)

Query: 14  LQVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTN-NLFSALEFS-------- 59
           L VH+     ++S      ++       AA     I +TD   ++  A  F         
Sbjct: 11  LHVHTIASGHAFS------TIEENARAAAALGLKGIGMTDHGPSMPGAPHFYHFMVLGFI 64

Query: 60  --QKACAAGIQPII-GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
                   G++ I  G + ++  +  + +              V+L 
Sbjct: 65  PDTLC---GVR-IFRGIEANLLDEGRIDLDESYLQNLD-----VILA 102


>gi|294631252|ref|ZP_06709812.1| phosphoesterase PHP, N [Streptomyces sp. e14]
 gi|292834585|gb|EFF92934.1| phosphoesterase PHP, N [Streptomyces sp. e14]
          Length = 285

 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++   AA     +A+TD +      E    A   G+  + G 
Sbjct: 5  LHTHSTAS--DGTDTPAELVRNAAAAGLDVVALTDHDTTRGHAEAL-AALPEGLTLVTGA 61

Query: 74 QLD 76
          +L 
Sbjct: 62 ELS 64


>gi|238916545|ref|YP_002930062.1| hypothetical protein EUBELI_00602 [Eubacterium eligens ATCC
          27750]
 gi|238871905|gb|ACR71615.1| Hypothetical protein EUBELI_00602 [Eubacterium eligens ATCC
          27750]
          Length = 297

 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-----AAGIQ 68
          L VHS+ S  +G  S   ++DK       A A+TD +      E              ++
Sbjct: 6  LHVHSTCS--DGTDSPAVLVDKAVDKGLAAFALTDHDTTRGVKEALLACENVNNNGHKLE 63

Query: 69 PIIGCQLDIDMQD 81
           I G ++  +  +
Sbjct: 64 VIPGVEISTNFDN 76


>gi|291532879|emb|CBL05992.1| hypothetical protein MHY_10070 [Megamonas hypermegale ART12/1]
          Length = 53

 Score = 51.3 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 10 SFVHLQVHSSYSLLEGALSLN 30
           F HL VH+ YSLL+GA  + 
Sbjct: 17 DFTHLHVHTEYSLLDGASRVK 37


>gi|50545509|ref|XP_500292.1| YALI0A20548p [Yarrowia lipolytica]
 gi|49646157|emb|CAG84230.1| YALI0A20548p [Yarrowia lipolytica]
          Length = 419

 Score = 51.3 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 10/77 (12%)

Query: 7   KSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL---FSALEFSQKAC 63
            +P ++    H+++S  +G+L+ + ++D   A    AI +TD NN+   ++A  +S+   
Sbjct: 102 DTPIYLETHSHTNHS--DGSLTPSQLVDWAQAYGLTAICVTDHNNIEGGWAARNYSETLR 159

Query: 64  AAGIQP----IIGCQLD 76
           + G +P    I G +  
Sbjct: 160 SEG-KPAPLVIPGVEFT 175


>gi|168183339|ref|ZP_02618003.1| PHP domain protein [Clostridium botulinum Bf]
 gi|237793977|ref|YP_002861529.1| PHP domain-containing protein [Clostridium botulinum Ba4 str.
          657]
 gi|182673439|gb|EDT85400.1| PHP domain protein [Clostridium botulinum Bf]
 gi|229262616|gb|ACQ53649.1| PHP domain protein [Clostridium botulinum Ba4 str. 657]
          Length = 272

 Score = 51.3 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          +  L VH+++S  +G   + N+LD        AIAITD + +
Sbjct: 3  YADLHVHTNHS--DGICEIANVLDMAKKKGIKAIAITDHDTV 42


>gi|325263538|ref|ZP_08130272.1| PHP domain protein [Clostridium sp. D5]
 gi|324031247|gb|EGB92528.1| PHP domain protein [Clostridium sp. D5]
          Length = 317

 Score = 51.3 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 20/80 (25%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL-------FS------ALEFSQ 60
          L  H++ S  +GA +   ++ + AA     +A+TD + +               AL    
Sbjct: 10 LHTHTTRS--DGADTPMEVIQRAAALGVRVLALTDHDTVPRRVYSEAGSETDLPAL---- 63

Query: 61 KACAAGIQPIIGCQLDIDMQ 80
           A AAG++ ++G ++  + +
Sbjct: 64 -AKAAGVKLLLGTEISCETE 82


>gi|307717334|gb|ADN88720.1| DNA polymerase III [Listeria seeligeri]
 gi|307717336|gb|ADN88721.1| DNA polymerase III [Listeria seeligeri]
 gi|307717366|gb|ADN88736.1| DNA polymerase III [Listeria seeligeri]
 gi|307717402|gb|ADN88754.1| DNA polymerase III [Listeria seeligeri]
 gi|307717406|gb|ADN88756.1| DNA polymerase III [Listeria seeligeri]
          Length = 231

 Score = 51.3 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
            +D     N  M               +   TA G + L +L++   + +   +  RI  
Sbjct: 165 DIDYHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNI-NYFYRVPRIPR 223

Query: 134 SWLQEI 139
           S L ++
Sbjct: 224 SQLNKL 229


>gi|121610828|ref|YP_998635.1| hypothetical protein Veis_3910 [Verminephrobacter eiseniae EF01-2]
 gi|121555468|gb|ABM59617.1| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2]
          Length = 130

 Score = 51.3 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRR 880
           L  IKG+G + +  I+E     PF   +DF  RV    + ++
Sbjct: 31  LEGIKGIGPSLSGKIVEERKSGPFKDWDDFVRRVG--GVGKK 70


>gi|227111428|ref|ZP_03825084.1| putative phosphoesterase [Pectobacterium carotovorum subsp.
          brasiliensis PBR1692]
          Length = 294

 Score = 51.3 bits (121), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +      E           ++ I 
Sbjct: 16 LHSHTTAS--DGLLTPTALVSRAVDMRVSVLAITDHDTTAGLDEAQDAIAQQDLPLRLIP 73

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 74 GVEISTLWENH 84


>gi|261402960|ref|YP_003247184.1| PHP domain protein [Methanocaldococcus vulcanius M7]
 gi|261369953|gb|ACX72702.1| PHP domain protein [Methanocaldococcus vulcanius M7]
          Length = 292

 Score = 51.3 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 15/96 (15%)

Query: 14 LQVHSSYSLLEGALS---------LNN---ILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          L +H+ YS   G            +     IL          +AITD N +   +E  + 
Sbjct: 5  LHIHTKYS---GIGRFWKLKFPDSVEEPKCILKMAKKRGIDIVAITDHNTIRGGIEAKKI 61

Query: 62 ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
              G++ IIG ++     + + +      P    P
Sbjct: 62 EKEFGVEVIIGSEIMTSQGEIIGLFLNEDVPKGLTP 97


>gi|269925521|ref|YP_003322144.1| PHP domain protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269789181|gb|ACZ41322.1| PHP domain protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 225

 Score = 51.3 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE 57
            L  H+S+S  +  +  + ++          +AITD N +  A E
Sbjct: 9  AELHCHTSWS-RDCLMRPDRLVQVCIEKGIEVLAITDHNEIGGAFE 53


>gi|170757413|ref|YP_001780294.1| phosphotransferase domain-containing protein [Clostridium
          botulinum B1 str. Okra]
 gi|169122625|gb|ACA46461.1| PHP domain protein [Clostridium botulinum B1 str. Okra]
          Length = 272

 Score = 51.3 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          +  L VH+++S  +G   + N+LD        AIAITD + +
Sbjct: 3  YADLHVHTNHS--DGICEIANVLDMAKKKGIKAIAITDHDTV 42


>gi|315924838|ref|ZP_07921055.1| fructose-bisphosphate aldolase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621737|gb|EFV01701.1| fructose-bisphosphate aldolase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 601

 Score = 51.3 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 10/80 (12%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN-------LFSA-L 56
           ++++P  V L  HS+ S  +G  +   ++D  A      +A+TD +        +    +
Sbjct: 281 MDRAPYAVDLHTHSTRS--DGGDTPQELIDNAAKRGVRVLALTDHDVIPPQKIEVNGIMV 338

Query: 57  EFSQKACAAGIQPIIGCQLD 76
           +    A   GIQ I G +  
Sbjct: 339 DPIAYAKTKGIQFIPGIEFS 358


>gi|121535802|ref|ZP_01667603.1| phosphoesterase PHP domain protein [Thermosinus carboxydivorans
          Nor1]
 gi|121305634|gb|EAX46575.1| phosphoesterase PHP domain protein [Thermosinus carboxydivorans
          Nor1]
          Length = 133

 Score = 51.3 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
            HS +S  +G LS   ++ +       AI +TD  ++
Sbjct: 6  HTHSFFS--DGVLSPIELIRRAHVAGYAAIGVTDHASM 41


>gi|187777776|ref|ZP_02994249.1| hypothetical protein CLOSPO_01368 [Clostridium sporogenes ATCC
          15579]
 gi|187774704|gb|EDU38506.1| hypothetical protein CLOSPO_01368 [Clostridium sporogenes ATCC
          15579]
          Length = 272

 Score = 51.3 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          +  L VH+++S  +G   + N+LD        AIAITD + +
Sbjct: 3  YADLHVHTNHS--DGICEIANVLDMAKKKGIKAIAITDHDTV 42


>gi|271969052|ref|YP_003343248.1| phosphotransferase domain-containing protein [Streptosporangium
          roseum DSM 43021]
 gi|270512227|gb|ACZ90505.1| phosphotransferase domain-containing protein [Streptosporangium
          roseum DSM 43021]
          Length = 284

 Score = 51.3 bits (121), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          L  HS+ S  +G      + +K AA     +A+TD +    
Sbjct: 5  LHAHSTAS--DGTDPPGELAEKAAAAGLDVVALTDHDTTAG 43


>gi|226947911|ref|YP_002803002.1| PHP domain protein [Clostridium botulinum A2 str. Kyoto]
 gi|226843276|gb|ACO85942.1| PHP domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 272

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          +  L VH+++S  +G   + N+LD        AIAITD + +
Sbjct: 3  YADLHVHTNHS--DGICEIANVLDMAKKKGIKAIAITDHDTV 42


>gi|239627729|ref|ZP_04670760.1| PHP domain-containing protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239517875|gb|EEQ57741.1| PHP domain-containing protein [Clostridiales bacterium 1_7_47FAA]
          Length = 301

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 9/72 (12%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ----KACAAGIQP 69
          L +HS YS  +G  +   ++ K +      +AI D N+    +  +     +A  AGI  
Sbjct: 8  LHMHSYYSD-DGEFTPEELVRKCSDSGIKVMAIADHNS----VRANARGELEAAKAGITY 62

Query: 70 IIGCQLDIDMQD 81
          I   ++D   + 
Sbjct: 63 IPAIEIDCTFRG 74


>gi|148378656|ref|YP_001253197.1| PHP domain protein [Clostridium botulinum A str. ATCC 3502]
 gi|153932799|ref|YP_001383039.1| phosphotransferase domain-containing protein [Clostridium
          botulinum A str. ATCC 19397]
 gi|153934904|ref|YP_001386588.1| phosphotransferase domain-containing protein [Clostridium
          botulinum A str. Hall]
 gi|148288140|emb|CAL82208.1| putative phophoesterase [Clostridium botulinum A str. ATCC 3502]
 gi|152928843|gb|ABS34343.1| PHP domain protein [Clostridium botulinum A str. ATCC 19397]
 gi|152930818|gb|ABS36317.1| PHP domain protein [Clostridium botulinum A str. Hall]
          Length = 272

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          +  L VH+++S  +G   + N+LD        AIAITD + +
Sbjct: 3  YADLHVHTNHS--DGICEIANVLDMAKKKGIKAIAITDHDTV 42


>gi|294661171|ref|YP_003573046.1| hypothetical protein Aasi_1597 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|227336321|gb|ACP20918.1| hypothetical protein Aasi_1597 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 566

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH+ YS  +G  SL N+     A     I ITD 
Sbjct: 332 HVHTQYS--DGQTSLENMAAYCQALGYSYIGITDH 364


>gi|322804981|emb|CBZ02540.1| protein trpH [Clostridium botulinum H04402 065]
          Length = 272

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          +  L VH+++S  +G   + N+LD        AIAITD + +
Sbjct: 3  YADLHVHTNHS--DGICEIANVLDMAKKKGIKAIAITDHDTV 42


>gi|296157754|ref|ZP_06840588.1| putative DNA uptake protein, ComEA-like protein [Burkholderia sp.
           Ch1-1]
 gi|295892000|gb|EFG71784.1| putative DNA uptake protein, ComEA-like protein [Burkholderia sp.
           Ch1-1]
          Length = 199

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KG+G   A+ I++    + PF + +D  +RV  K +  + + +L  AG
Sbjct: 33  ALESVKGIGPVHAKAIIDERTKNGPFKNADDLATRV--KGIGTKSVTNLEAAG 83


>gi|302553967|ref|ZP_07306309.1| PHP domain-containing protein [Streptomyces viridochromogenes DSM
          40736]
 gi|302471585|gb|EFL34678.1| PHP domain-containing protein [Streptomyces viridochromogenes DSM
          40736]
          Length = 286

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++ K AA     +A+TD +      E    A   G+  + G 
Sbjct: 5  LHTHSTAS--DGTDAPAELVRKAAATGLDVVALTDHDTTRGHAEAI-AALPEGLTLVTGA 61

Query: 74 QLDIDMQD 81
          +L   +  
Sbjct: 62 ELSCRLDG 69


>gi|91783444|ref|YP_558650.1| putative DNA uptake protein, ComEA-like [Burkholderia xenovorans
           LB400]
 gi|91687398|gb|ABE30598.1| Putative DNA uptake protein, ComEA-like protein [Burkholderia
           xenovorans LB400]
          Length = 201

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KG+G   A+ I++    + PF + +D  +RV  K +  + + +L  AG
Sbjct: 33  ALESVKGIGPVHAKAIIDERTKNGPFKNADDLATRV--KGIGTKSVTNLEAAG 83


>gi|319790405|ref|YP_004152038.1| PHP domain protein [Thermovibrio ammonificans HB-1]
 gi|317114907|gb|ADU97397.1| PHP domain protein [Thermovibrio ammonificans HB-1]
          Length = 220

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+ +S  +G L  + ++ +  A    AIA+TD 
Sbjct: 4  LHTHTIFS--DGELIPSELVRRAEAKGYRAIALTDH 37


>gi|261417358|ref|YP_003251041.1| PHP domain protein [Fibrobacter succinogenes subsp. succinogenes
          S85]
 gi|261373814|gb|ACX76559.1| PHP domain protein [Fibrobacter succinogenes subsp. succinogenes
          S85]
 gi|302328090|gb|ADL27291.1| PHP domain protein [Fibrobacter succinogenes subsp. succinogenes
          S85]
          Length = 290

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-ACAAGIQP 69
          +  L +H+   L +G LS++ +L          I+ITD +NL  + + +++ A   G++ 
Sbjct: 15 YADLHMHTK--LSDGTLSVDELLMLCKRKGLRCISITDHDNL-DSYKLAEEPAKEIGLEI 71

Query: 70 IIGCQLD 76
          I G ++ 
Sbjct: 72 IPGIEIS 78


>gi|50121221|ref|YP_050388.1| putative phosphoesterase [Pectobacterium atrosepticum SCRI1043]
 gi|49611747|emb|CAG75196.1| putative phosphoesterase [Pectobacterium atrosepticum SCRI1043]
          Length = 294

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 75/261 (28%), Gaps = 57/261 (21%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H++ S  +G L+   ++ +    +   +AITD +      E        G  ++ + 
Sbjct: 16  LHSHTTAS--DGLLTPTALVSRAVDMRVSVLAITDHDTTAGLDEAQHAIAQQGLPLRLVS 73

Query: 72  GCQLDIDMQDNLKMTNQG--KTPFPTVPSIV----------------LLVSTA-----EG 108
           G ++    +++          T  P +  ++                 L          G
Sbjct: 74  GVEISTLWENHEIHIVGLGMDTAHPALTRLLQQQAACRQSRAEQIAARLEKNRIPDALAG 133

Query: 109 YQRLIELVSRMYLLDQGKQSVRICL-------SWLQEIGTEGLIMLTGGSSGPIDRAFFF 161
            Q    L +   +         I L          ++   +G I         I +A   
Sbjct: 134 AQ---RLATGGQITRAHFARYLIELGIAANMNQVFKKYLAKGKIGYVPPQWCTIPQAIEA 190

Query: 162 -------------NSSQVAEKRLLTFKKLFGDR--LYVNL-QRHRGYDRYRESQVVQLAY 205
                            +  K L      F +   + + + Q  +  D    +Q+ + A 
Sbjct: 191 IHQSGGVSVLAHPGRYDLTAKWLKRLLATFAESGGIAMEVAQCQQAPDER--TQLGRYAR 248

Query: 206 THELPLVATNNSLFLSEEDYE 226
            + L  +A+  S F     + 
Sbjct: 249 DYNL--MASQGSDFHLPCAWI 267


>gi|153938431|ref|YP_001390013.1| phosphotransferase domain-containing protein [Clostridium
          botulinum F str. Langeland]
 gi|152934327|gb|ABS39825.1| PHP domain protein [Clostridium botulinum F str. Langeland]
 gi|295318099|gb|ADF98476.1| PHP domain protein [Clostridium botulinum F str. 230613]
          Length = 272

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          +  L VH+++S  +G   + N+LD        AIAITD + +
Sbjct: 3  YADLHVHTNHS--DGICEIANVLDMAKKKGIKAIAITDHDTV 42


>gi|111222360|ref|YP_713154.1| hypothetical protein FRAAL2942 [Frankia alni ACN14a]
 gi|111149892|emb|CAJ61586.1| conserved hypothetical protein [Frankia alni ACN14a]
          Length = 288

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA---GIQPI 70
          L  HS+ S  +G +    ++          IA+TD +           A +A   G+  I
Sbjct: 8  LHTHSTAS--DGLIHPEALMRLAVEMALLVIALTDHDT----YRGIDAAASALPPGLTLI 61

Query: 71 IGCQLD 76
           G ++ 
Sbjct: 62 PGVEIS 67


>gi|302337826|ref|YP_003803032.1| PHP domain protein [Spirochaeta smaragdinae DSM 11293]
 gi|301635011|gb|ADK80438.1| PHP domain protein [Spirochaeta smaragdinae DSM 11293]
          Length = 237

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 9/68 (13%)

Query: 14 LQVHSSYSLLEGA-LSLNNILDKIAADQQPAIAITDTN---NLFSALEFSQ-KACAAGIQ 68
          L +HS  S      +S   I+ +  A     +A+TD N   NL          A  + I 
Sbjct: 7  LHIHSCLSPCGSLEMSPARIITEAEAAGLDLVALTDHNCARNL----RAFDHAARKSNIT 62

Query: 69 PIIGCQLD 76
          PI G +++
Sbjct: 63 PIFGIEVN 70


>gi|255657484|ref|ZP_05402893.1| putative phophoesterase [Clostridium difficile QCD-23m63]
 gi|296449080|ref|ZP_06890870.1| PHP family metal-dependent phosphoesterase [Clostridium difficile
          NAP08]
 gi|296879903|ref|ZP_06903876.1| PHP family metal-dependent phosphoesterase [Clostridium difficile
          NAP07]
 gi|296262173|gb|EFH08978.1| PHP family metal-dependent phosphoesterase [Clostridium difficile
          NAP08]
 gi|296429192|gb|EFH15066.1| PHP family metal-dependent phosphoesterase [Clostridium difficile
          NAP07]
          Length = 278

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
            L  H++  + +   +   I+ K A      +AIT+ + L    E        GI  I 
Sbjct: 3  TELHCHTN--ISDNNFTTEEIIKKAAEKNINILAITNHDTLSGLDEAIVLGEHYGITIIP 60

Query: 72 GCQLD 76
          G ++ 
Sbjct: 61 GIEIS 65


>gi|330860990|emb|CBX71263.1| protein trpH [Yersinia enterocolitica W22703]
          Length = 316

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H++ S  +G+LS   ++ + A  +   +AITD +      E +         I+ I 
Sbjct: 39  LHSHTTAS--DGSLSPAALVIRAAQMRVGVLAITDHDTTAGLAEAAATIKQQQLPIRLIS 96

Query: 72  GCQLDIDMQDN 82
           G ++    +++
Sbjct: 97  GVEISTLWENH 107


>gi|206895366|ref|YP_002246803.1| DNA polymerase beta family [Coprothermobacter proteolyticus DSM
           5265]
 gi|206737983|gb|ACI17061.1| DNA polymerase beta family [Coprothermobacter proteolyticus DSM
           5265]
          Length = 571

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 15/98 (15%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT----NNLFSA--------LEFSQK 61
           L VHS++S  +G  ++  +  K        + I+D       +           +   ++
Sbjct: 340 LHVHSTFS--DGTDTVETMARKAKEMGYEWLVISDHATGLGVVGGLKPEDLPDYIAAIKE 397

Query: 62  A-CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS 98
           A    GI+  +G + +I        T+           
Sbjct: 398 AEKKVGIRIFVGLEGNIKADGTFLFTDDRVEVLIAAIH 435


>gi|168178032|ref|ZP_02612696.1| PHP domain protein [Clostridium botulinum NCTC 2916]
 gi|182670378|gb|EDT82352.1| PHP domain protein [Clostridium botulinum NCTC 2916]
          Length = 272

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          +  L VH+++S  +G   + N+LD        AIAITD + +
Sbjct: 3  YADLHVHTNHS--DGICEIANVLDMAKKKGIKAIAITDHDTV 42


>gi|149195333|ref|ZP_01872420.1| DNA polymerase X family/PHP domain protein [Caminibacter
           mediatlanticus TB-2]
 gi|149134525|gb|EDM23014.1| DNA polymerase X family/PHP domain protein [Caminibacter
           mediatlanticus TB-2]
          Length = 567

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H+ YS  +GA S+  ++ K        I ITD 
Sbjct: 342 HMHTIYS--DGANSIEEMVKKAINLNYKYITITDH 374


>gi|90408506|ref|ZP_01216664.1| PHP domain containing protein (TRPH) [Psychromonas sp. CNPT3]
 gi|90310385|gb|EAS38512.1| PHP domain containing protein (TRPH) [Psychromonas sp. CNPT3]
          Length = 286

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  HS+ S  +G L+   ++ + A  Q   +A+TD + +       +     G  I+ I 
Sbjct: 5   LHSHSTAS--DGQLTPQELVIRAANRQVDILALTDHDTIDGLAPAHKAIADLGLKIKLIN 62

Query: 72  GCQLDID--MQDNLKMTNQGKTPFPTVPSIVLL 102
           G ++  +    +   +          +  ++LL
Sbjct: 63  GIEITTNWLNHEIHVVGVNIDVQHQALSELILL 95


>gi|320531828|ref|ZP_08032746.1| PHP domain protein [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320135956|gb|EFW27986.1| PHP domain protein [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 281

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            HS+ S  +G  S   ++ + A      + +TD + +    E ++    +G+  + G +
Sbjct: 6  HTHSACS--DGTDSPAGLMAQAAGAGLDVVGLTDHDTMAGWDEAARAVPDSGVALLRGTE 63

Query: 75 LDIDMQD 81
          +      
Sbjct: 64 ISCAADG 70


>gi|317064822|ref|ZP_07929307.1| phosphotransferase domain-containing protein [Fusobacterium
          ulcerans ATCC 49185]
 gi|313690498|gb|EFS27333.1| phosphotransferase domain-containing protein [Fusobacterium
          ulcerans ATCC 49185]
          Length = 292

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 17 HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
          HS YS  +G  S   I+     ++   +A+TD N++    E ++    AGI+ I G ++D
Sbjct: 2  HSLYSD-DGEFSPEEIIAIGKKEEMEIMALTDHNSVKGVDEMTEYGKKAGIKVISGVEID 60


>gi|293374528|ref|ZP_06620850.1| PHP domain protein [Turicibacter sanguinis PC909]
 gi|292646907|gb|EFF64895.1| PHP domain protein [Turicibacter sanguinis PC909]
          Length = 267

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L VH++  + + +LS    L          +AIT+ + +    E        GI+ I G 
Sbjct: 5   LHVHTN--ISDSSLSTEATLLLAKERGLTHVAITNHDTVMGLKEAIALGKMIGIEVIPGI 62

Query: 74  QLD-IDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           ++   D   ++K    G       P I  LV
Sbjct: 63  EISAYDFNRHVKAHILGYNFDLEAPHIKALV 93


>gi|154249409|ref|YP_001410234.1| phosphotransferase domain-containing protein [Fervidobacterium
          nodosum Rt17-B1]
 gi|154153345|gb|ABS60577.1| PHP domain protein [Fervidobacterium nodosum Rt17-B1]
          Length = 280

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS--QKACAAGIQPIIG 72
            H++ S  +G L  N ++ K        +AITD + +  A      + A    I  I G
Sbjct: 6  HTHTTCS--DGTLEPNELVKKAKLIGIEVLAITDHDTIC-AFREIDDKYADDLDITVIKG 62

Query: 73 CQLDIDMQDN 82
           ++ +D   +
Sbjct: 63 VEISVDYPTD 72


>gi|187777428|ref|ZP_02993901.1| hypothetical protein CLOSPO_00995 [Clostridium sporogenes ATCC
           15579]
 gi|187774356|gb|EDU38158.1| hypothetical protein CLOSPO_00995 [Clostridium sporogenes ATCC
           15579]
          Length = 225

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 12/94 (12%)

Query: 15  QVH-SSYSLLEGALSLNNILDKIAADQQPAIAITDTNN---LFSALEFSQKACAAGIQPI 70
            +H S YS L+  +SL  I+ +        + ITD  +   +    E    + A G   +
Sbjct: 6   HIHESKYS-LDSKISLEEIVKRAKEIGLDGVCITDHESSDIM---DEAHAYSKATGFLIL 61

Query: 71  IGCQLDIDMQD----NLKMTNQGKTPFPTVPSIV 100
           +G ++     D     LK   + K     +  IV
Sbjct: 62  VGAEILTYEGDILVFGLKDIPKNKMHAKDLLRIV 95


>gi|325841143|ref|ZP_08167268.1| PHP domain protein [Turicibacter sp. HGF1]
 gi|325490000|gb|EGC92346.1| PHP domain protein [Turicibacter sp. HGF1]
          Length = 267

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L VH++  + + +LS    L          +AIT+ + +    E        GI+ I G 
Sbjct: 5   LHVHTN--ISDSSLSTEATLLLAKERGLTHVAITNHDTVMGLKEAIALGKMIGIEVIPGI 62

Query: 74  QLD-IDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           ++   D   ++K    G       P I  LV
Sbjct: 63  EISAYDFNRHVKAHILGYNFDLEAPHIKALV 93


>gi|150400728|ref|YP_001324494.1| phosphotransferase domain-containing protein [Methanococcus
          aeolicus Nankai-3]
 gi|150013431|gb|ABR55882.1| PHP domain protein [Methanococcus aeolicus Nankai-3]
          Length = 297

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 15/93 (16%)

Query: 14 LQVHSSYSLLEGALS------------LNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          L +HS YS   G +               NI+          IAITD N +   LE  + 
Sbjct: 10 LHIHSKYS---GLMKYMGLTFPDSVEEPKNIIRSAKKKGLDIIAITDHNTIRGGLETKKL 66

Query: 62 ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFP 94
              G++ I+G ++     + L +    + P  
Sbjct: 67 EKEYGVEVIVGSEIMTKDGELLGLYLNEEIPKG 99


>gi|323706217|ref|ZP_08117784.1| PHP domain protein [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534381|gb|EGB24165.1| PHP domain protein [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 259

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH+ YS  +GA +++ +++         I ITD 
Sbjct: 133 HVHTIYS--DGANTISEMVNAARDCGYKIIGITDH 165


>gi|187477858|ref|YP_785882.1| hypothetical protein BAV1360 [Bordetella avium 197N]
 gi|115422444|emb|CAJ48969.1| putative exported protein [Bordetella avium 197N]
          Length = 129

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           L  +KGVG  +A  I+       PF SL+D   RV  + +  R +     AG
Sbjct: 32  LRELKGVGPRSAELIVRERERGGPFLSLQDLSERV--RGIGERKIAGFAEAG 81


>gi|20092421|ref|NP_618496.1| hypothetical protein MA3621 [Methanosarcina acetivorans C2A]
 gi|19917677|gb|AAM06976.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 224

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L VHS YS  +   S  +IL+          AI D + +   L  ++KA   G  I  I 
Sbjct: 5  LHVHSEYS-RDSESSHEDILENALKRGLDGFAICDHDTVEGGLACAKKALELGLEITVIP 63

Query: 72 GCQLD 76
          G ++ 
Sbjct: 64 GVEVS 68


>gi|325970922|ref|YP_004247113.1| PHP domain protein [Spirochaeta sp. Buddy]
 gi|324026160|gb|ADY12919.1| PHP domain protein [Spirochaeta sp. Buddy]
          Length = 236

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 31/109 (28%), Gaps = 25/109 (22%)

Query: 14  LQVHS--------SYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSALEFSQKA 62
           L  HS         +S          +  +        +A+TD N   NL     F +  
Sbjct: 7   LHNHSCLSPCANDDFS-------PALLAVEAMEQGIQILALTDHNSARNLA---PFQEAC 56

Query: 63  CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV--LLV--STAE 107
              GI P+ G ++    + ++              S +  LL       
Sbjct: 57  QLCGILPLFGLEVSTVEEVHVLTLFSHLKDAQQFGSFIEFLLPEQKNRT 105


>gi|269119198|ref|YP_003307375.1| PHP domain protein [Sebaldella termitidis ATCC 33386]
 gi|268613076|gb|ACZ07444.1| PHP domain protein [Sebaldella termitidis ATCC 33386]
          Length = 298

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS YS  +G    + ++          IA+ D N++    E   K    G++ I   
Sbjct: 8  LHMHSGYSD-DGEFKPSVLVQMCKDAGLKYIAVADHNSVKGVEEAVNKGEELGVKVITAI 66

Query: 74 QLDIDMQD 81
          ++D   + 
Sbjct: 67 EIDCTYEG 74


>gi|312134600|ref|YP_004001938.1| hypothetical protein Calow_0558 [Caldicellulosiruptor owensensis
           OL]
 gi|311774651|gb|ADQ04138.1| hypothetical protein Calow_0558 [Caldicellulosiruptor owensensis
           OL]
          Length = 433

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 2/88 (2%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +H+ YS      S +  +   A    P   I D + +  A EF      AGI   IG +
Sbjct: 48  HIHTFYSF--SPYSPSKAIYMAAKSGLPTAGIMDHDTIAGAQEFIVAGKLAGIATTIGVE 105

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
              D    L    +   P     + V +
Sbjct: 106 CRADFSKTLLSGKKINNPDQHSIAYVAI 133


>gi|302390064|ref|YP_003825885.1| PHP domain protein [Thermosediminibacter oceani DSM 16646]
 gi|302200692|gb|ADL08262.1| PHP domain protein [Thermosediminibacter oceani DSM 16646]
          Length = 286

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 81/261 (31%), Gaps = 57/261 (21%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSALEFSQKACAAGIQPI 70
           L +H++ S  +G      +L K+ +      A+TD +   NL    E +  A   G++ I
Sbjct: 18  LHIHTTAS--DGTWRPKTLLKKLISAGIKLFAVTDHDTTENLA---ETAALAKEYGLKFI 72

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL---VSTAEGYQRLIE----LV------S 117
            G +++    ++                I+ L       E  QRL++    L+      S
Sbjct: 73  NGVEVNTTYNNH-------------NYHILGLGIQPENEE-LQRLLKRNRQLMEEKDDES 118

Query: 118 RMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             YL  +      +C    +E              G   +A  +   +   +    F  L
Sbjct: 119 IKYLERKY---PIVCFDEYKEYKNN------PDRGGW--KALNYLIDKKLCRSYKDFFSL 167

Query: 178 FGDRLYVNLQRHRGYDRYRE----SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
           FGD           +++         +  +     +P++A   + F  ++       ++ 
Sbjct: 168 FGD-------WGNPFEKLEFVSPGEAIKAICMAGGVPVLAHPGASFYDKDYKALITFMIG 220

Query: 234 VAHSTVVSQKDRPRVTPDHYL 254
                +             Y 
Sbjct: 221 EGIRGIECYHPENSPEITRYC 241


>gi|126696317|ref|YP_001091203.1| metal-dependent phosphoesterase [Prochlorococcus marinus str. MIT
          9301]
 gi|126543360|gb|ABO17602.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Prochlorococcus marinus str. MIT 9301]
          Length = 215

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 15/71 (21%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI------- 67
            H+ +S  +G+L    +LD+   +    ++ITD +     ++  +      I       
Sbjct: 25 HCHTKFS--DGSLEPYELLDQAYKNNLKFLSITDHHT----IKAHEYIKKNNILKNYPKD 78

Query: 68 --QPIIGCQLD 76
              I G +++
Sbjct: 79 SFTLISGIEIN 89


>gi|145298416|ref|YP_001141257.1| PHP family metal-dependent phosphoesterase [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142851188|gb|ABO89509.1| metal-dependent phosphoesterase, PHP family [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 293

 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
           L  H++ S  +G LS  +++ + A  Q   +A+TD + L     +  + +A    ++ + 
Sbjct: 5   LHCHTTAS--DGVLSPADLVRRAAEKQVEVLAVTDHDTLDGLDEVRRTIEAEQLPLRLVS 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           G ++    + +                +  L 
Sbjct: 63  GVEISTGWEHHEIHVVALGVDEKNPQLVAFLA 94


>gi|46447259|ref|YP_008624.1| hypothetical protein pc1625 [Candidatus Protochlamydia
          amoebophila UWE25]
 gi|46400900|emb|CAF24349.1| conserved hypothetical protein [Candidatus Protochlamydia
          amoebophila UWE25]
          Length = 280

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 10/67 (14%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK----ACAAGIQP 69
          L  H++ S  +G +    I++         ++ITD +     +E  +     A   G+  
Sbjct: 8  LHCHTTCS--DGTVDPLEIINLAINSGLQGLSITDHDT----IEAYKDAAPFAQQKGLSL 61

Query: 70 IIGCQLD 76
          I G +  
Sbjct: 62 IPGVEFS 68


>gi|156937849|ref|YP_001435645.1| hypothetical protein Igni_1060 [Ignicoccus hospitalis KIN4/I]
 gi|156566833|gb|ABU82238.1| Protein of unknown function DUF655 [Ignicoccus hospitalis KIN4/I]
          Length = 209

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
           +L  + GVG      I+EA  +KPF+S ED   R   K
Sbjct: 126 ALELLPGVGRKMLEEILEARKNKPFESFEDLAKRTHLK 163


>gi|308177942|ref|YP_003917348.1| PHP domain-containing protein [Arthrobacter arilaitensis Re117]
 gi|307745405|emb|CBT76377.1| PHP domain-containing protein [Arthrobacter arilaitensis Re117]
          Length = 281

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  +   ++   +      +A+TD +      + ++ A   G+  I G 
Sbjct: 5   LHTHSNVS--DGTETPTQLMHAASVAGLDVVALTDHDQTTGWAQATEAASKLGLGFIPGM 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           ++     + + +        P+   ++
Sbjct: 63  EITCQDSNGISVHLLSYLHDPSYQPLL 89


>gi|291084641|ref|ZP_06540538.2| hypothetical protein Salmonellaentericaenterica_38137 [Salmonella
          enterica subsp. enterica serovar Typhi str. AG3]
          Length = 172

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++    G  +  I 
Sbjct: 5  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|262043012|ref|ZP_06016155.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259039614|gb|EEW40742.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 287

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 20/105 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +++ +     ++   AG+      
Sbjct: 12  LHSHTTAS--DGRLTPQELVHRAHEMRVGTLAITDHDSVAAIPAAREEIARAGLPLTLVN 69

Query: 70  --------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
                         I+G  +DI       +  + K        ++
Sbjct: 70  GVEISTLWENHEIHIVGLNIDIAHPTMTALLEEQKARRQQRGQMI 114


>gi|238894320|ref|YP_002919054.1| putative enzyme of the trp operon [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238546636|dbj|BAH62987.1| putative enzyme of the trp operon [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 287

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 20/105 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +++ +     ++   AG+      
Sbjct: 12  LHSHTTAS--DGRLTPQELVHRAHEMRVGTLAITDHDSVAAIPAAREEIARAGLPLTLVN 69

Query: 70  --------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
                         I+G  +DI       +  + K        ++
Sbjct: 70  GVEISTLWENHEIHIVGLNIDIAHPTMTALLEEQKARRQQRGQMI 114


>gi|157374826|ref|YP_001473426.1| phosphotransferase domain-containing protein [Shewanella
          sediminis HAW-EB3]
 gi|157317200|gb|ABV36298.1| PHP C-terminal domain protein [Shewanella sediminis HAW-EB3]
          Length = 285

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+ + ++++   +     AITD +      E           ++ I 
Sbjct: 10 LHSHTTAS--DGQLTPSELIERAIGNGVEMFAITDHDTTAGLAEAHTYNQRHETPLKLIN 67

Query: 72 GCQLDIDMQDN 82
          G ++     ++
Sbjct: 68 GVEISTRWHNH 78


>gi|150401837|ref|YP_001325603.1| hypothetical protein Maeo_1415 [Methanococcus aeolicus Nankai-3]
 gi|150014540|gb|ABR56991.1| PHP domain protein [Methanococcus aeolicus Nankai-3]
          Length = 217

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 62/219 (28%), Gaps = 62/219 (28%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT---NNLFSALEFSQK-------ACA 64
             H+ +S  +G L  + +L +        IAITD    +N        ++       A  
Sbjct: 6   HTHTVFS--DGELIPSELLRRAIVLNHKTIAITDHADASN-------YKELIEKTTLAKE 56

Query: 65  A-----GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                  IQ I+G +L      +++   +          +V                   
Sbjct: 57  ELKKYWDIQLIVGVELTHIPPKSIETMAKKCKDIGAEIVVV------------------- 97

Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
                  ++    +                   G +D     +   + ++      +   
Sbjct: 98  -----HGETPVEPVEEKTNYY--------ASLCGDVD--ILAHGGFIDDETAKNLVE--- 139

Query: 180 DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSL 218
           + +++ +   RG+       V  +A  + +P V   ++ 
Sbjct: 140 NNIFLEITARRGH-SLTNGFVQNIAKKYNIPTVINTDTH 177


>gi|332161876|ref|YP_004298453.1| hypothetical protein YE105_C2254 [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|325666106|gb|ADZ42750.1| hypothetical protein YE105_C2254 [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
          Length = 305

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G+LS   ++ + A  +   +AITD +      E +         I+ I 
Sbjct: 28 LHSHTTAS--DGSLSPAALVIRAAQMRVGVLAITDHDTTAGLAEAAATIKQQQLPIRLIS 85

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 86 GVEISTLWENH 96


>gi|56421229|ref|YP_148547.1| hypothetical protein GK2694 [Geobacillus kaustophilus HTA426]
 gi|56381071|dbj|BAD76979.1| DNA-dependent DNA polymerase beta chain [Geobacillus kaustophilus
           HTA426]
          Length = 574

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA SL  + +         IAITD 
Sbjct: 340 LHMHSAWS--DGACSLEELAEACRRRGYRYIAITDH 373


>gi|326796236|ref|YP_004314056.1| PHP domain protein [Marinomonas mediterranea MMB-1]
 gi|326547000|gb|ADZ92220.1| PHP domain protein [Marinomonas mediterranea MMB-1]
          Length = 284

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 14 LQVHSSYSLL--EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L +HS    L  +G  +   ++ +   +    +A+TD ++L    E   +A   G++ I 
Sbjct: 11 LHMHS----LASDGVFAPAVLMQRAYENGVEVVALTDHDSLNGLDEARCEAVKLGMKFIN 66

Query: 72 GCQLDI 77
          G +L +
Sbjct: 67 GVELSV 72


>gi|329939620|ref|ZP_08288921.1| PHP domain-containing protein [Streptomyces griseoaurantiacus
          M045]
 gi|329301190|gb|EGG45085.1| PHP domain-containing protein [Streptomyces griseoaurantiacus
          M045]
          Length = 285

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++   AA     +A+TD +      E    A  +G+  + G 
Sbjct: 5  LHTHSTAS--DGTDTPAELVRNAAAAGLDVVALTDHDTTRGHAEAL-AALPSGLTLVTGA 61

Query: 74 QLD 76
          +L 
Sbjct: 62 ELS 64


>gi|118620043|ref|YP_908375.1| hypothetical protein MUL_5029 [Mycobacterium ulcerans Agy99]
 gi|118572153|gb|ABL06904.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
          Length = 335

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS +S  +G+  +  ++D  AA      A+TD 
Sbjct: 100 LHLHSEWS--DGSAPIEELMDTAAALGHEYCALTDH 133


>gi|303246490|ref|ZP_07332769.1| PHP domain protein [Desulfovibrio fructosovorans JJ]
 gi|302492200|gb|EFL52075.1| PHP domain protein [Desulfovibrio fructosovorans JJ]
          Length = 221

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+++S  +G L  + +  + A     A+A+TD 
Sbjct: 4  LHTHTTFS--DGELIPSELARRAAKAGYRAMAMTDH 37


>gi|330002628|ref|ZP_08304383.1| PHP domain protein [Klebsiella sp. MS 92-3]
 gi|328537248|gb|EGF63509.1| PHP domain protein [Klebsiella sp. MS 92-3]
          Length = 287

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 20/105 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +++ +     ++   AG+      
Sbjct: 12  LHSHTTAS--DGRLTPQELVHRAHEMRVGTLAITDHDSVAAIPAAREEIARAGLPLTLVN 69

Query: 70  --------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
                         I+G  +DI       +  + K        ++
Sbjct: 70  GVEISTLWENHEIHIVGLNIDIAHPTMTALLEEQKARRQQRGQMI 114


>gi|292492014|ref|YP_003527453.1| PHP domain protein [Nitrosococcus halophilus Nc4]
 gi|291580609|gb|ADE15066.1| PHP domain protein [Nitrosococcus halophilus Nc4]
          Length = 573

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H+     +G+ SL  +    A      +AITD 
Sbjct: 342 LHCHTK--ATDGSNSLEEMAQAAAERGYEYLAITDH 375


>gi|330507071|ref|YP_004383499.1| PHP domain-containing protein [Methanosaeta concilii GP-6]
 gi|328927879|gb|AEB67681.1| PHP domain protein [Methanosaeta concilii GP-6]
          Length = 210

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+++S  +G L  + ++ +       AI ITD 
Sbjct: 4  LHTHTTFS--DGELIPSELVRRAEVLGYTAIGITDH 37


>gi|213024603|ref|ZP_03339050.1| hypothetical protein Salmonelentericaenterica_19786 [Salmonella
          enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 92

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++    G  +  I 
Sbjct: 5  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|86559624|ref|YP_473444.1| putative metal-dependent phosphoesterase [Clostridium perfringens]
 gi|168206638|ref|ZP_02632643.1| putative metal-dependent phosphoesterase [Clostridium perfringens E
           str. JGS1987]
 gi|86475896|dbj|BAE79071.1| putative metal-dependent phosphoesterase [Clostridium perfringens]
 gi|170661910|gb|EDT14593.1| putative metal-dependent phosphoesterase [Clostridium perfringens E
           str. JGS1987]
          Length = 382

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 9/106 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN--NLFS-ALEFSQKACAAGIQ-P 69
           L +HS+YS  +G  +L  IL   +  +   I+ITD +  ++++   +  +     G + P
Sbjct: 36  LHIHSNYS-CDGMQTLKQILMFASEKKLDVISITDHDSISVYNELPKEIEILKKKGYKLP 94

Query: 70  II--GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL--LVSTAEGYQR 111
           II  G +  +   +   M +  K        I++  +    + Y  
Sbjct: 95  IIIPGVEFSVRFDEYGSMCHILKYFINPFDPIIIEEINRNYKAYWN 140


>gi|318605610|emb|CBY27108.1| putative metal-dependent phosphoesterases (PHP family) [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 316

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H++ S  +G+LS   ++ + A  +   +AITD +      E           I+ I 
Sbjct: 39  LHSHTTAS--DGSLSPAALVIRAAQMRVGVLAITDHDTTAGLAEAVATIKQQQLPIRLIS 96

Query: 72  GCQLDIDMQDN 82
           G ++    +++
Sbjct: 97  GVEISTLWENH 107


>gi|89894549|ref|YP_518036.1| hypothetical protein DSY1803 [Desulfitobacterium hafniense Y51]
 gi|219668981|ref|YP_002459416.1| PHP domain protein [Desulfitobacterium hafniense DCB-2]
 gi|89333997|dbj|BAE83592.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539241|gb|ACL20980.1| PHP domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 280

 Score = 50.6 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G+LS+  ++ + A      +A+TD        E  +      +  I G 
Sbjct: 8  LHIHTIES--DGSLSVAGVIQEAAERGVRVLALTDHETTNGVPEAMELGQKHNLNIIPGV 65

Query: 74 QL 75
          +L
Sbjct: 66 EL 67


>gi|325479724|gb|EGC82814.1| PHP domain protein [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 278

 Score = 50.6 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 6/60 (10%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN--NLFSALEFSQKACAAGIQ 68
          +  L  H+++S  +G L + ++L +        +AITD +  N F  ++  +KA   GI+
Sbjct: 5  YADLHSHTNHS--DGLLEIEDVLKRAKDKGVEVLAITDHDTSNHFGEIK--KKAGEIGIK 60


>gi|325295033|ref|YP_004281547.1| PHP domain protein [Desulfurobacterium thermolithotrophum DSM
          11699]
 gi|325065481|gb|ADY73488.1| PHP domain protein [Desulfurobacterium thermolithotrophum DSM
          11699]
          Length = 222

 Score = 50.6 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+ +S  +G L  + ++ +  +    A+AITD 
Sbjct: 4  LHTHTIFS--DGELIPSELVRRAESIGYRALAITDH 37


>gi|209519548|ref|ZP_03268341.1| Helix-hairpin-helix DNA-binding class 1 [Burkholderia sp. H160]
 gi|209500027|gb|EEA00090.1| Helix-hairpin-helix DNA-binding class 1 [Burkholderia sp. H160]
          Length = 189

 Score = 50.6 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KG+G   A+ I++    + PF + +D  +RV  K L ++ + +L  AG
Sbjct: 33  ALESVKGIGPVHAQAILDERAKNGPFKNADDLATRV--KGLGQKSVANLEAAG 83


>gi|21227996|ref|NP_633918.1| DNA polymerase beta [Methanosarcina mazei Go1]
 gi|20906424|gb|AAM31590.1| DNA polymerase beta [Methanosarcina mazei Go1]
          Length = 584

 Score = 50.6 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+ YS  EGA SL  +++K  +     IA+TD 
Sbjct: 352 LHMHTDYS--EGAESLETMVEKAESMGYEYIAVTDH 385


>gi|150399879|ref|YP_001323646.1| hypothetical protein Mevan_1134 [Methanococcus vannielii SB]
 gi|150012582|gb|ABR55034.1| PHP domain protein [Methanococcus vannielii SB]
          Length = 232

 Score = 50.6 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 71/216 (32%), Gaps = 55/216 (25%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS---------ALEFSQKACA- 64
             H+ +S  +G L  + ++ +       AI ITD  ++ +         A+    +    
Sbjct: 20  HTHTVFS--DGELIPSELVRRAKVLGHVAIGITDHADMSNYKELIEKNIAVR--DEIKDY 75

Query: 65  -AGIQPIIGCQLD-IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLL 122
              I+ ++G ++  +  +   KM  + K         +++V        ++E VS     
Sbjct: 76  WNDIRVVVGVEITHVPPKSIPKMAKKCKNRGAE----IVVVHGET----IVEPVSE---E 124

Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRL 182
                S+   +  L      GLI                   + A+  L        + +
Sbjct: 125 TNYYASISEDVDILA---HPGLI-----------------DIETAKNILE-------NNI 157

Query: 183 YVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSL 218
           +  +   +G+       V+ ++    +P +   ++ 
Sbjct: 158 FFEITSRKGH-SLTNGHVLNISRALNIPTLINTDTH 192


>gi|254520784|ref|ZP_05132840.1| phosphotransferase domain-containing protein [Clostridium sp.
           7_2_43FAA]
 gi|226914533|gb|EEH99734.1| phosphotransferase domain-containing protein [Clostridium sp.
           7_2_43FAA]
          Length = 239

 Score = 50.6 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 66/237 (27%), Gaps = 52/237 (21%)

Query: 3   QYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
           + + +   F    +HS+ S  +G L    I+      +   IA+TD N +      +++A
Sbjct: 10  KKMYRKGDF---HIHSTES--DGELKPGEIVLLAKERRVDIIALTDHNTVSG----NKQA 60

Query: 63  CA----AGIQPIIGCQLDIDMQDNLKMTNQ---GKTPFPTVPSIVLLVSTAEGYQRLIEL 115
                  G++ I G +L    + N                   ++L          L   
Sbjct: 61  VNVGQIHGVKVIPGIELSTRFKGNKVHILGYFTDDKYQSDEFKMIL--------NNLC-- 110

Query: 116 VSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP----------IDRAFFFNSSQ 165
            +R +   Q     ++           G I  + G                        +
Sbjct: 111 -TRKFKACQIYFKGKLSFK-----SEGGKIATSAGIDFLHHYNVKVVLAHPTLLDRGVFE 164

Query: 166 VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSE 222
                       F     +  + +R  D   E   + +A    +   A ++   L +
Sbjct: 165 QIINL------NFDG---IEAKYYRNKDNETE-YFINVAKKKNIIYTAGSDFHSLKK 211


>gi|152969812|ref|YP_001334921.1| putative enzyme [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150954661|gb|ABR76691.1| putative enzyme [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 280

 Score = 50.6 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 20/105 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +++ +     ++   AG+      
Sbjct: 5   LHSHTTAS--DGRLTPQELVHRAHEMRVGTLAITDHDSVAAIPAAREEIARAGLPLTLVN 62

Query: 70  --------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
                         I+G  +DI       +  + K        ++
Sbjct: 63  GVEISTLWENHEIHIVGLNIDIAHPTMTALLEEQKARRQQRGQMI 107


>gi|94309674|ref|YP_582884.1| helix-hairpin-helix DNA-binding, class 1 [Cupriavidus metallidurans
           CH34]
 gi|93353526|gb|ABF07615.1| conserved hypothetical protein; putative exported protein
           [Cupriavidus metallidurans CH34]
          Length = 126

 Score = 50.6 bits (119), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 9/69 (13%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
           +LA +KG+G  TA+ I +    +  F    D   RV    +  + + +L  AG    FG 
Sbjct: 53  ALATVKGIGPATAKRIADERGKNGAFKDANDLVDRVP--GIGPKSVANLQAAGL--SFGK 108

Query: 897 S----RMQL 901
           +    R   
Sbjct: 109 TPDVARKDA 117


>gi|298675552|ref|YP_003727302.1| PHP domain-containing protein [Methanohalobium evestigatum
          Z-7303]
 gi|298288540|gb|ADI74506.1| PHP domain protein [Methanohalobium evestigatum Z-7303]
          Length = 212

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+ +S  +G L  + ++ +       AIAITD 
Sbjct: 4  LHTHTVFS--DGELIPSELVRRAVVTGYEAIAITDH 37


>gi|312136822|ref|YP_004004159.1| php domain protein [Methanothermus fervidus DSM 2088]
 gi|311224541|gb|ADP77397.1| PHP domain protein [Methanothermus fervidus DSM 2088]
          Length = 216

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAIT---DTNNLFSA---LEFSQKACAA-G 66
           L +HS +S  +G L  + I  +       AIAIT   D +N++     +           
Sbjct: 6   LHIHSIFS--DGDLIPSEIARRAKFLGHEAIAITDHVDHSNIYCVENIIRVVDDIEENWE 63

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           I+ I G ++     + ++              +V
Sbjct: 64  IKVIPGVEITHVPPEVIEKLANKARNLGAEIILV 97


>gi|187478046|ref|YP_786070.1| phosphoesterase [Bordetella avium 197N]
 gi|115422632|emb|CAJ49157.1| putative phosphoesterase [Bordetella avium 197N]
          Length = 281

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G L   ++  +  A+     A+TD + +    +    A   G++ I G 
Sbjct: 10 LHCHSTMS--DGMLPPADVARRAHANGVDVWALTDHDEVSGVAQARAAAAELGMRFITGA 67

Query: 74 QLDIDM 79
          ++ +  
Sbjct: 68 EISVTW 73


>gi|313901804|ref|ZP_07835227.1| PHP domain protein [Thermaerobacter subterraneus DSM 13965]
 gi|313467924|gb|EFR63415.1| PHP domain protein [Thermaerobacter subterraneus DSM 13965]
          Length = 288

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 38/178 (21%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H++ S  +G ++    +      +   + ITD + L       + A  AG+  + G 
Sbjct: 10  LHTHTTAS--DGTVTPRERIRMAREAELEFVGITDHDTLAGLPAAREAAREAGVVLVPGV 67

Query: 74  QL--DIDMQDNLKMTN-QGKTPFPTVPSIV-LLVS---TAEGYQRLIELV---------- 116
           +L  D+D+       +  G         +V LL     + E  QRL  ++          
Sbjct: 68  ELSTDVDLGSRRVGVHILGYWVDEAAEPLVQLLARRRASRE--QRLARMLQRLAEAGIVL 125

Query: 117 ----SRMYLLDQGKQSVRICLSWLQEIGTEGLIM---------LTGGSSGPIDRAFFF 161
                R            +  + ++     G++          LT G  G + RA   
Sbjct: 126 DEERIRAMAQGGAIGRPHVARALVEA----GVVATVAEAFERYLTPGKPGYVPRAPLA 179


>gi|188533747|ref|YP_001907544.1| Protein TrpH [Erwinia tasmaniensis Et1/99]
 gi|188028789|emb|CAO96651.1| Protein TrpH [Erwinia tasmaniensis Et1/99]
          Length = 308

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 10/121 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H+  S  +G L+   ++ +    +   +AITD +     +   +        ++ I 
Sbjct: 21  LHSHTRAS--DGLLTPEQLVLRAVEQRVGVLAITDHDTTDGIIPAREAIARHQLPLRLIS 78

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G ++    +++                I  L     G +RL        L+ +  +   I
Sbjct: 79  GVEISTLWENHEIHIVGLGIDIAHPGMIAFLA-GQAG-RRLAR----AQLIAERLEKAHI 132

Query: 132 C 132
            
Sbjct: 133 P 133


>gi|73670707|ref|YP_306722.1| hypothetical protein Mbar_A3261 [Methanosarcina barkeri str.
          Fusaro]
 gi|72397869|gb|AAZ72142.1| conserved hypothetical protein [Methanosarcina barkeri str.
          Fusaro]
          Length = 215

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+ +S  +G L  + ++ +       AIA+TD 
Sbjct: 4  LHTHTIFS--DGELIPSELVRRAVIHGYKAIALTDH 37


>gi|229013754|ref|ZP_04170882.1| PHP C-terminal domain protein [Bacillus mycoides DSM 2048]
 gi|228747423|gb|EEL97298.1| PHP C-terminal domain protein [Bacillus mycoides DSM 2048]
          Length = 573

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRAHGYKFMAITDH 374


>gi|15614846|ref|NP_243149.1| hypothetical protein BH2283 [Bacillus halodurans C-125]
 gi|10174903|dbj|BAB06002.1| BH2283 [Bacillus halodurans C-125]
          Length = 290

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+ S  +G  S   +++K        +A+TD + +    E  Q A   G   I G 
Sbjct: 9  LHMHSTAS--DGGYSPTELMEKCHQANLKFVALTDHDTVNGIEEAKQTAHRLGFILIPGI 66

Query: 74 QLD 76
          +L 
Sbjct: 67 ELS 69


>gi|229087100|ref|ZP_04219250.1| PHP C-terminal domain protein [Bacillus cereus Rock3-44]
 gi|228696168|gb|EEL49003.1| PHP C-terminal domain protein [Bacillus cereus Rock3-44]
          Length = 572

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 373


>gi|307730613|ref|YP_003907837.1| helix-hairpin-helix motif protein [Burkholderia sp. CCGE1003]
 gi|307585148|gb|ADN58546.1| helix-hairpin-helix motif protein [Burkholderia sp. CCGE1003]
          Length = 121

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  IKG+G   A+ I+E   A  PF    D   RV  K +    +E L
Sbjct: 31  ALRGIKGIGPAKAKAILEERAAHGPFKDPADLSKRV--KGMGGHTVERL 77


>gi|323526947|ref|YP_004229100.1| helix-hairpin-helix motif protein [Burkholderia sp. CCGE1001]
 gi|323383949|gb|ADX56040.1| helix-hairpin-helix motif protein [Burkholderia sp. CCGE1001]
          Length = 121

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  IKG+G   A+ I+E   A  PF    D   RV  K +    +E L
Sbjct: 31  ALRGIKGIGPAKAKAILEERAAHGPFKDPADLSKRV--KGMGGHTVERL 77


>gi|295677270|ref|YP_003605794.1| helix-hairpin-helix motif protein [Burkholderia sp. CCGE1002]
 gi|295437113|gb|ADG16283.1| helix-hairpin-helix motif protein [Burkholderia sp. CCGE1002]
          Length = 124

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  IKG+G   A+ I++   A  PF    D   RV  K +    +E L
Sbjct: 31  ALRGIKGIGPAKAKAIVDERNAHGPFKDAADLGKRV--KGMGGHTIERL 77


>gi|224583787|ref|YP_002637585.1| hypothetical protein SPC_2008 [Salmonella enterica subsp.
          enterica serovar Paratyphi C strain RKS4594]
 gi|224468314|gb|ACN46144.1| hypothetical protein SPC_2008 [Salmonella enterica subsp.
          enterica serovar Paratyphi C strain RKS4594]
          Length = 293

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++    G  +  I 
Sbjct: 16 LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGLALNLIP 73

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 74 GVEISTVWENH 84


>gi|229491240|ref|ZP_04385068.1| PHP domain protein [Rhodococcus erythropolis SK121]
 gi|229321978|gb|EEN87771.1| PHP domain protein [Rhodococcus erythropolis SK121]
          Length = 333

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS +S  +G   +  ++ + AA      A+TD 
Sbjct: 99  LHTHSDWS--DGGSPIEEMMRRAAALGHDYCALTDH 132


>gi|312795462|ref|YP_004028384.1| COME operon protein 1 [Burkholderia rhizoxinica HKI 454]
 gi|312167237|emb|CBW74240.1| COME operon protein 1 [Burkholderia rhizoxinica HKI 454]
          Length = 123

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 8/59 (13%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS---RVDSKKLNRRVLESLVFAGALDC 893
           L AI G+G +TA+ I+EA  A  PF S +D      RV +K + +   + L+     D 
Sbjct: 54  LQAIHGIGPSTAQAIIEARDAQGPFSSADDLVRRVKRVGAKSVAKWQAQGLI----FDA 108


>gi|261253233|ref|ZP_05945806.1| PHP family hydrolase [Vibrio orientalis CIP 102891]
 gi|260936624|gb|EEX92613.1| PHP family hydrolase [Vibrio orientalis CIP 102891]
          Length = 288

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 82/260 (31%), Gaps = 55/260 (21%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H++ S  +G L  N ++D+  +     +AITD + +       Q        I+ I 
Sbjct: 5   LHSHTTAS--DGRLPPNELIDRALSFNLEVLAITDHDTVDGLDLAHQYINDNDLPIKLIN 62

Query: 72  GCQ--------------LDIDMQDNLKMTNQGKTPFPTVPSIVLLVS-----TAEGYQRL 112
           G +              L+ID  ++  ++   +          L+       T EG    
Sbjct: 63  GIEISTVWQNKDIHIVGLNIDPTNDALLSLIDQQKSHRESRAELIAQRLEKATREGVLEE 122

Query: 113 IELV------SRMY----LLDQGKQSV--RICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
           ++L+      +R +    L+D G      ++   +L      G +  T  S      A  
Sbjct: 123 VKLIAGDAPVTRAHFAKWLVDNGYAKTMQQVFKKYLTR-NNPGYVPPTWCSMKDAVDAIH 181

Query: 161 F----------NSSQVAEKRLLTFKKLF---GDRLYVNL-QRHRGYDRYRESQVVQLAYT 206
                          +  K L      F   G    + + Q  +G    R   +   A  
Sbjct: 182 AAGGEAVLAHPARYDLTAKWLKRLLAAFVEAGGDA-MEVAQPQQGQQERRN--LADYAIQ 238

Query: 207 HELPLVATNNSLFLSEEDYE 226
           +   L+A+  S F     + 
Sbjct: 239 Y--KLLASQGSDFHYPSPWM 256


>gi|312109982|ref|YP_003988298.1| PHP domain protein [Geobacillus sp. Y4.1MC1]
 gi|311215083|gb|ADP73687.1| PHP domain protein [Geobacillus sp. Y4.1MC1]
          Length = 572

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +         +AITD 
Sbjct: 340 LHMHSAWS--DGACSIEEMAEACRKKGYRYMAITDH 373


>gi|295399459|ref|ZP_06809441.1| PHP domain protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978925|gb|EFG54521.1| PHP domain protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 572

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +         +AITD 
Sbjct: 340 LHMHSAWS--DGACSIEEMAEACRKKGYRYMAITDH 373


>gi|284007496|emb|CBA72977.1| conserved hypothetical protein [Arsenophonus nasoniae]
          Length = 285

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA--CAAGIQPII 71
          L  H+  S  +G L+   ++D+        +AITD + +   L   Q        +  I 
Sbjct: 14 LHSHTKAS--DGDLTPVELVDRAVLMGVDVLAITDHDTVNGILPAWQYIDEKNKPLTLIT 71

Query: 72 GCQLD 76
          G ++ 
Sbjct: 72 GVEIS 76


>gi|296505028|ref|YP_003666728.1| hypothetical protein BMB171_C4199 [Bacillus thuringiensis BMB171]
 gi|296326080|gb|ADH09008.1| hypothetical protein BMB171_C4199 [Bacillus thuringiensis BMB171]
          Length = 572

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 373


>gi|226309456|ref|YP_002769418.1| hypothetical protein RER_59710 [Rhodococcus erythropolis PR4]
 gi|226188575|dbj|BAH36679.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 333

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS +S  +G   +  ++ + AA      A+TD 
Sbjct: 99  LHTHSDWS--DGGSPIEEMMRRAAALGHDYCALTDH 132


>gi|163942284|ref|YP_001647168.1| hypothetical protein BcerKBAB4_4381 [Bacillus weihenstephanensis
           KBAB4]
 gi|163864481|gb|ABY45540.1| PHP domain protein [Bacillus weihenstephanensis KBAB4]
          Length = 572

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 373


>gi|228910377|ref|ZP_04074192.1| PHP C-terminal domain protein [Bacillus thuringiensis IBL 200]
 gi|228849143|gb|EEM93982.1| PHP C-terminal domain protein [Bacillus thuringiensis IBL 200]
          Length = 573

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|228960822|ref|ZP_04122457.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798844|gb|EEM45823.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 573

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|238027047|ref|YP_002911278.1| putative comE protein [Burkholderia glumae BGR1]
 gi|237876241|gb|ACR28574.1| Putative comE protein [Burkholderia glumae BGR1]
          Length = 213

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KG+G   ++ I++    + PF S +D  +RV  K L ++ + +L  AG
Sbjct: 33  ALESVKGLGPVKSKAIIDERTKNGPFKSADDLANRV--KGLGQKSVANLEAAG 83


>gi|237807719|ref|YP_002892159.1| PHP domain-containing protein [Tolumonas auensis DSM 9187]
 gi|237499980|gb|ACQ92573.1| PHP domain protein [Tolumonas auensis DSM 9187]
          Length = 287

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  HS+ S  +G  S + ++ +    +   +A+TD +++    +  Q     G  +  + 
Sbjct: 5  LHSHSTCS--DGHFSPDELVARAVEKEVDVLALTDHDSVDGIAQAQQAIEKNGWPLFLVP 62

Query: 72 GCQLDIDMQ 80
          G ++     
Sbjct: 63 GVEISCTWD 71


>gi|186475518|ref|YP_001856988.1| hypothetical protein Bphy_0753 [Burkholderia phymatum STM815]
 gi|184191977|gb|ACC69942.1| conserved hypothetical protein [Burkholderia phymatum STM815]
          Length = 122

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  IKG+G   A+ I++   A  PF    D   RV  K L    +E L
Sbjct: 31  ALRGIKGIGPAKAKAILDERAAHGPFKDAADLSKRV--KGLGGHTVERL 77


>gi|312898914|ref|ZP_07758302.1| PHP domain protein [Megasphaera micronuciformis F0359]
 gi|310620076|gb|EFQ03648.1| PHP domain protein [Megasphaera micronuciformis F0359]
          Length = 274

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 24/117 (20%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQ 68
           FV L VH+  S  +G  S   + +K A      I++TD + L                I+
Sbjct: 2   FVDLHVHTDCS--DGVYSPEEVTEKAARAGLSVISLTDHDTLA----AYDGTHRLNPDIR 55

Query: 69  PIIGCQL--------------DIDMQDNLKMTNQGKTPFPTVPSIVLLVS--TAEGY 109
            I G ++               ID ++   +          +   VL+       GY
Sbjct: 56  IIPGIEMSSEYADSDVHILGYYIDTKNEELLEYCRDFSLRRLNRAVLMAQKCCEAGY 112


>gi|301056060|ref|YP_003794271.1| DNA polymerase X family [Bacillus anthracis CI]
 gi|300378229|gb|ADK07133.1| DNA polymerase X family [Bacillus cereus biovar anthracis str. CI]
          Length = 572

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 373


>gi|228941732|ref|ZP_04104279.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974656|ref|ZP_04135222.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981250|ref|ZP_04141550.1| PHP C-terminal domain protein [Bacillus thuringiensis Bt407]
 gi|228778450|gb|EEM26717.1| PHP C-terminal domain protein [Bacillus thuringiensis Bt407]
 gi|228785059|gb|EEM33072.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817944|gb|EEM64022.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326942337|gb|AEA18233.1| hypothetical protein CT43_CH4573 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 573

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|218231679|ref|YP_002369350.1| hypothetical protein BCB4264_A4663 [Bacillus cereus B4264]
 gi|218159636|gb|ACK59628.1| PHP domain protein [Bacillus cereus B4264]
          Length = 573

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|297529146|ref|YP_003670421.1| PHP domain protein [Geobacillus sp. C56-T3]
 gi|297252398|gb|ADI25844.1| PHP domain protein [Geobacillus sp. C56-T3]
          Length = 574

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA SL  +++         IAITD 
Sbjct: 340 LHMHSAWS--DGACSLAELVEACRRRGYRYIAITDH 373


>gi|289578362|ref|YP_003476989.1| PHP domain protein [Thermoanaerobacter italicus Ab9]
 gi|289528075|gb|ADD02427.1| PHP domain protein [Thermoanaerobacter italicus Ab9]
          Length = 278

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC----AAG 66
          F  L +HS  S  +G  S + ++          I++TD +     ++  ++A        
Sbjct: 2  FADLHMHSKAS--DGTNSPSEVVRLAKEHGLSCISLTDHDT----IDGLEEAVWISFKYE 55

Query: 67 IQPIIGCQLDIDMQD 81
          I+ I G + +   Q+
Sbjct: 56 IEVIPGIEFNCYYQN 70


>gi|222479778|ref|YP_002566015.1| histidinol phosphate phosphatase HisJ family [Halorubrum
          lacusprofundi ATCC 49239]
 gi|222452680|gb|ACM56945.1| histidinol phosphate phosphatase HisJ family [Halorubrum
          lacusprofundi ATCC 49239]
          Length = 283

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           VH++YS  +GA  L+ ++D         + ITD  N+
Sbjct: 26 HVHTNYS--DGAF-LSRMVDAATDAGLDGVGITDHCNV 60


>gi|229124118|ref|ZP_04253310.1| PHP C-terminal domain protein [Bacillus cereus 95/8201]
 gi|228659420|gb|EEL15068.1| PHP C-terminal domain protein [Bacillus cereus 95/8201]
          Length = 573

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|49478687|ref|YP_038601.1| hypothetical protein BT9727_4286 [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330243|gb|AAT60889.1| DNA polymerase X family [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 572

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 373


>gi|52140953|ref|YP_085876.1| hypothetical protein BCZK4297 [Bacillus cereus E33L]
 gi|51974422|gb|AAU15972.1| DNA polymerase X family [Bacillus cereus E33L]
          Length = 572

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 373


>gi|229817190|ref|ZP_04447472.1| hypothetical protein BIFANG_02449 [Bifidobacterium angulatum DSM
          20098]
 gi|229784979|gb|EEP21093.1| hypothetical protein BIFANG_02449 [Bifidobacterium angulatum DSM
          20098]
          Length = 293

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
            H+ +S  +G  +   ++     +    IAITD +    
Sbjct: 18 HCHTVFS--DGTETPQGMVSLALRNGLDGIAITDHDTSAG 55


>gi|222098017|ref|YP_002532074.1| hypothetical protein BCQ_4359 [Bacillus cereus Q1]
 gi|229158158|ref|ZP_04286226.1| PHP C-terminal domain protein [Bacillus cereus ATCC 4342]
 gi|221242075|gb|ACM14785.1| DNA polymerase X family [Bacillus cereus Q1]
 gi|228625320|gb|EEK82079.1| PHP C-terminal domain protein [Bacillus cereus ATCC 4342]
          Length = 572

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 373


>gi|218899707|ref|YP_002448118.1| PHP domain protein [Bacillus cereus G9842]
 gi|218541143|gb|ACK93537.1| PHP domain protein [Bacillus cereus G9842]
          Length = 573

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|254724520|ref|ZP_05186303.1| hypothetical protein BantA1_18965 [Bacillus anthracis str. A1055]
          Length = 572

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 373


>gi|228935863|ref|ZP_04098673.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823631|gb|EEM69453.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 573

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|229019773|ref|ZP_04176576.1| PHP C-terminal domain protein [Bacillus cereus AH1273]
 gi|229026000|ref|ZP_04182384.1| PHP C-terminal domain protein [Bacillus cereus AH1272]
 gi|228735281|gb|EEL85892.1| PHP C-terminal domain protein [Bacillus cereus AH1272]
 gi|228741498|gb|EEL91695.1| PHP C-terminal domain protein [Bacillus cereus AH1273]
          Length = 573

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|229062236|ref|ZP_04199558.1| PHP C-terminal domain protein [Bacillus cereus AH603]
 gi|228717064|gb|EEL68743.1| PHP C-terminal domain protein [Bacillus cereus AH603]
          Length = 573

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|229093647|ref|ZP_04224747.1| PHP C-terminal domain protein [Bacillus cereus Rock3-42]
 gi|228689734|gb|EEL43541.1| PHP C-terminal domain protein [Bacillus cereus Rock3-42]
          Length = 573

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|229135385|ref|ZP_04264174.1| PHP C-terminal domain protein [Bacillus cereus BDRD-ST196]
 gi|228648081|gb|EEL04127.1| PHP C-terminal domain protein [Bacillus cereus BDRD-ST196]
          Length = 573

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|229112017|ref|ZP_04241560.1| PHP C-terminal domain protein [Bacillus cereus Rock1-15]
 gi|229152749|ref|ZP_04280933.1| PHP C-terminal domain protein [Bacillus cereus m1550]
 gi|228630727|gb|EEK87372.1| PHP C-terminal domain protein [Bacillus cereus m1550]
 gi|228671340|gb|EEL26641.1| PHP C-terminal domain protein [Bacillus cereus Rock1-15]
          Length = 573

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|217962034|ref|YP_002340604.1| hypothetical protein BCAH187_A4679 [Bacillus cereus AH187]
 gi|229141280|ref|ZP_04269818.1| PHP C-terminal domain protein [Bacillus cereus BDRD-ST26]
 gi|217068143|gb|ACJ82393.1| PHP domain protein [Bacillus cereus AH187]
 gi|228642061|gb|EEK98354.1| PHP C-terminal domain protein [Bacillus cereus BDRD-ST26]
          Length = 573

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|42783725|ref|NP_980972.1| hypothetical protein BCE_4679 [Bacillus cereus ATCC 10987]
 gi|42739655|gb|AAS43580.1| PHP domain protein [Bacillus cereus ATCC 10987]
          Length = 572

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 373


>gi|324328444|gb|ADY23704.1| hypothetical protein YBT020_22380 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 572

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 373


>gi|238763132|ref|ZP_04624098.1| hypothetical protein ykris0001_40710 [Yersinia kristensenii ATCC
          33638]
 gi|238698631|gb|EEP91382.1| hypothetical protein ykris0001_40710 [Yersinia kristensenii ATCC
          33638]
          Length = 292

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G+LS + ++ + A  +   +AITD +      E +         I+ I 
Sbjct: 18 LHSHTTAS--DGSLSPSALVIRAAQMRVGVLAITDHDTTAGLAEAAATIEQQQLPIRLIP 75

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 76 GVEISTLWENH 86


>gi|320085780|emb|CBY95556.1| Protein trpH [Salmonella enterica subsp. enterica serovar
          Weltevreden str. 2007-60-3289-1]
          Length = 293

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 16 LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSGLALNLIP 73

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 74 GVEISTVWENH 84


>gi|30264621|ref|NP_846998.1| hypothetical protein BA_4795 [Bacillus anthracis str. Ames]
 gi|47530092|ref|YP_021441.1| hypothetical protein GBAA_4795 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187443|ref|YP_030695.1| hypothetical protein BAS4448 [Bacillus anthracis str. Sterne]
 gi|167641574|ref|ZP_02399821.1| PHP domain protein [Bacillus anthracis str. A0193]
 gi|254686956|ref|ZP_05150814.1| hypothetical protein BantC_24384 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254736659|ref|ZP_05194365.1| hypothetical protein BantWNA_15961 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741697|ref|ZP_05199384.1| hypothetical protein BantKB_11897 [Bacillus anthracis str. Kruger
           B]
 gi|254754706|ref|ZP_05206741.1| hypothetical protein BantV_19657 [Bacillus anthracis str. Vollum]
 gi|254757538|ref|ZP_05209565.1| hypothetical protein BantA9_04446 [Bacillus anthracis str.
           Australia 94]
 gi|30259279|gb|AAP28484.1| PHP domain protein [Bacillus anthracis str. Ames]
 gi|47505240|gb|AAT33916.1| PHP domain protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181370|gb|AAT56746.1| PHP domain protein [Bacillus anthracis str. Sterne]
 gi|167510459|gb|EDR85858.1| PHP domain protein [Bacillus anthracis str. A0193]
          Length = 572

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 373


>gi|268324575|emb|CBH38163.1| conserved hypothetical protein containing PHP domain [uncultured
           archaeon]
          Length = 306

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H+++S  +    + + L          +AITD N +   +E  +      +  I G +
Sbjct: 43  HYHTNHS--DSPTRVKDALKLAKQKGF-GLAITDHNQISGVIEAYE--LKTDVLVIPGME 97

Query: 75  LDIDMQDNL 83
           +      ++
Sbjct: 98  VSARDGPHI 106


>gi|229169280|ref|ZP_04296991.1| PHP C-terminal domain protein [Bacillus cereus AH621]
 gi|228614175|gb|EEK71289.1| PHP C-terminal domain protein [Bacillus cereus AH621]
          Length = 573

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|121536009|ref|ZP_01667799.1| PHP C-terminal domain protein [Thermosinus carboxydivorans Nor1]
 gi|121305399|gb|EAX46351.1| PHP C-terminal domain protein [Thermosinus carboxydivorans Nor1]
          Length = 275

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 19/113 (16%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H++ S  +G L+   ++++        IAITD + +   L+   +    G++ I G 
Sbjct: 5   LHIHTTAS--DGRLNPGEVVEQAVQAGLNCIAITDHDTVDG-LKILMEENKEGLRIIPGI 61

Query: 74  QL--------------DIDMQDNLKMTNQGKTPFPTVPSIVLLVS--TAEGYQ 110
           +                ID  ++   +   +        + L+V      GY+
Sbjct: 62  EFSTDLPQHEVHILGYYIDWCEDELCSCLERLAAGRQTRLRLMVDKINRLGYK 114


>gi|228954822|ref|ZP_04116842.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228804811|gb|EEM51410.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 573

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|228987802|ref|ZP_04147911.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771850|gb|EEM20307.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 573

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|119963803|ref|YP_948484.1| PHP domain-containing protein [Arthrobacter aurescens TC1]
 gi|119950662|gb|ABM09573.1| putative PHP domain protein [Arthrobacter aurescens TC1]
          Length = 281

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 2/87 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  +   ++    +    A+A+TD ++       +  A   GI  + G 
Sbjct: 5   LHAHSNVS--DGTETPAGVIISAVSAGLDAVALTDHDSTDGWESAAAAAREHGIAFVPGM 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           ++    +  + +        P    ++
Sbjct: 63  EISCRTEQGISVHLLSYLHDPAHAGLL 89


>gi|56413353|ref|YP_150428.1| hypothetical protein SPA1155 [Salmonella enterica subsp. enterica
          serovar Paratyphi A str. ATCC 9150]
 gi|197362277|ref|YP_002141914.1| hypothetical protein SSPA1074 [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. AKU_12601]
 gi|56127610|gb|AAV77116.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093754|emb|CAR59228.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Paratyphi A str. AKU_12601]
          Length = 293

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++    G  +  I 
Sbjct: 16 LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGLALNLIP 73

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 74 GVEISTVWENH 84


>gi|317126165|ref|YP_004100277.1| PHP domain protein [Intrasporangium calvum DSM 43043]
 gi|315590253|gb|ADU49550.1| PHP domain protein [Intrasporangium calvum DSM 43043]
          Length = 338

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS +S  +G   +  ++       Q  +A+TD 
Sbjct: 103 LHVHSDWS--DGGSPIEEMVLTAVELGQEWMALTDH 136


>gi|297624702|ref|YP_003706136.1| PHP domain-containing protein [Truepera radiovictrix DSM 17093]
 gi|297165882|gb|ADI15593.1| PHP domain protein [Truepera radiovictrix DSM 17093]
          Length = 583

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 22/93 (23%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT-------NNLFSALEFSQKACA--- 64
             H+++S  +GA SL+ ++    A     +A+ D        N L       ++A A   
Sbjct: 342 HNHTTWS--DGACSLDEMVAAARALGYRYLALADHSRTSYYANGLS-VERVFEQARAVAR 398

Query: 65  ---------AGIQPIIGCQLDIDMQDNLKMTNQ 88
                    A  + + G ++DI    +L   ++
Sbjct: 399 LREALDRDGADFKVLHGLEVDILPDGSLDYPDE 431


>gi|269102964|ref|ZP_06155661.1| putative metal-dependent phosphoesterase [Photobacterium damselae
          subsp. damselae CIP 102761]
 gi|268162862|gb|EEZ41358.1| putative metal-dependent phosphoesterase [Photobacterium damselae
          subsp. damselae CIP 102761]
          Length = 289

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL 56
          L  H++ S  +G L+   ++ +    +   +AITD + + +  
Sbjct: 5  LHTHTTAS--DGRLTPEELVKRAVERRVDVLAITDHDTVAALP 45


>gi|296109208|ref|YP_003616157.1| PHP domain protein [Methanocaldococcus infernus ME]
 gi|295434022|gb|ADG13193.1| PHP domain protein [Methanocaldococcus infernus ME]
          Length = 219

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 69/238 (28%), Gaps = 59/238 (24%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--SQKACAA------- 65
            +H+ YS  +G L  + +  +        IAITD        +F   ++           
Sbjct: 6   HMHTVYS--DGELIPSELARRAKVLGHKVIAITDHG------DFSNYKELIEKALLSKEI 57

Query: 66  ----GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYL 121
                I+ I G +L         +    +        IV+ V        ++E V     
Sbjct: 58  EKYLDIKIIAGVELTHVPP--KAIPKLARKAKDCGAEIVV-VHGET----IVEPV----- 105

Query: 122 LDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
            +       +    +  +   G+I                      ++     K+   + 
Sbjct: 106 EEGTNYYASMS-EDVDILAHPGII---------------------DKETAENLKE---NN 140

Query: 182 LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTV 239
           +++ +   RG+        +++   +++P+V   ++    +         + +     
Sbjct: 141 IFLEITSRRGH-SLTNGLTLKIGREYKIPMVVNTDTHSPKDIINFEFAKKVCLGCGMT 197


>gi|228917191|ref|ZP_04080748.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228842392|gb|EEM87483.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 573

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|229099011|ref|ZP_04229946.1| PHP C-terminal domain protein [Bacillus cereus Rock3-29]
 gi|228684509|gb|EEL38452.1| PHP C-terminal domain protein [Bacillus cereus Rock3-29]
          Length = 573

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|229175260|ref|ZP_04302775.1| PHP C-terminal domain protein [Bacillus cereus MM3]
 gi|228608092|gb|EEK65399.1| PHP C-terminal domain protein [Bacillus cereus MM3]
          Length = 573

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|218905778|ref|YP_002453612.1| PHP domain protein [Bacillus cereus AH820]
 gi|228929600|ref|ZP_04092618.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228948277|ref|ZP_04110560.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229105179|ref|ZP_04235828.1| PHP C-terminal domain protein [Bacillus cereus Rock3-28]
 gi|229118042|ref|ZP_04247402.1| PHP C-terminal domain protein [Bacillus cereus Rock1-3]
 gi|218537637|gb|ACK90035.1| PHP domain protein [Bacillus cereus AH820]
 gi|228665491|gb|EEL20973.1| PHP C-terminal domain protein [Bacillus cereus Rock1-3]
 gi|228678105|gb|EEL32333.1| PHP C-terminal domain protein [Bacillus cereus Rock3-28]
 gi|228811264|gb|EEM57602.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228829987|gb|EEM75606.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 573

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|206977723|ref|ZP_03238614.1| PHP domain protein [Bacillus cereus H3081.97]
 gi|229198702|ref|ZP_04325401.1| PHP C-terminal domain protein [Bacillus cereus m1293]
 gi|206744024|gb|EDZ55440.1| PHP domain protein [Bacillus cereus H3081.97]
 gi|228584778|gb|EEK42897.1| PHP C-terminal domain protein [Bacillus cereus m1293]
          Length = 573

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|75762596|ref|ZP_00742446.1| DNA Polymerase X family [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228903070|ref|ZP_04067207.1| PHP C-terminal domain protein [Bacillus thuringiensis IBL 4222]
 gi|228967650|ref|ZP_04128671.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|74489916|gb|EAO53282.1| DNA Polymerase X family [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228792026|gb|EEM39607.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228856556|gb|EEN01079.1| PHP C-terminal domain protein [Bacillus thuringiensis IBL 4222]
          Length = 573

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|229032199|ref|ZP_04188172.1| PHP C-terminal domain protein [Bacillus cereus AH1271]
 gi|228728979|gb|EEL79982.1| PHP C-terminal domain protein [Bacillus cereus AH1271]
          Length = 573

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|229147112|ref|ZP_04275471.1| PHP C-terminal domain protein [Bacillus cereus BDRD-ST24]
 gi|228636361|gb|EEK92832.1| PHP C-terminal domain protein [Bacillus cereus BDRD-ST24]
          Length = 573

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|300863596|ref|ZP_07108540.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Oscillatoria sp. PCC 6506]
 gi|300338395|emb|CBN53682.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Oscillatoria sp. PCC 6506]
          Length = 498

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
           L  + GVG   A+ I+ A   +PF SLED   RV    + +++LE 
Sbjct: 449 LETLPGVGPKLAQKIIAARKQQPFSSLEDL-DRVP--GVGKKMLER 491


>gi|229163543|ref|ZP_04291493.1| PHP C-terminal domain protein [Bacillus cereus R309803]
 gi|228619925|gb|EEK76801.1| PHP C-terminal domain protein [Bacillus cereus R309803]
          Length = 573

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|229072055|ref|ZP_04205264.1| PHP C-terminal domain protein [Bacillus cereus F65185]
 gi|229081806|ref|ZP_04214298.1| PHP C-terminal domain protein [Bacillus cereus Rock4-2]
 gi|229180872|ref|ZP_04308207.1| PHP C-terminal domain protein [Bacillus cereus 172560W]
 gi|229192753|ref|ZP_04319711.1| PHP C-terminal domain protein [Bacillus cereus ATCC 10876]
 gi|228590592|gb|EEK48453.1| PHP C-terminal domain protein [Bacillus cereus ATCC 10876]
 gi|228602429|gb|EEK59915.1| PHP C-terminal domain protein [Bacillus cereus 172560W]
 gi|228701394|gb|EEL53888.1| PHP C-terminal domain protein [Bacillus cereus Rock4-2]
 gi|228710989|gb|EEL62955.1| PHP C-terminal domain protein [Bacillus cereus F65185]
          Length = 573

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|196034533|ref|ZP_03101942.1| PHP domain protein [Bacillus cereus W]
 gi|195993075|gb|EDX57034.1| PHP domain protein [Bacillus cereus W]
          Length = 573

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|83589989|ref|YP_429998.1| PHP-like [Moorella thermoacetica ATCC 39073]
 gi|83572903|gb|ABC19455.1| PHP-like protein [Moorella thermoacetica ATCC 39073]
          Length = 291

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 10/95 (10%)

Query: 11  FVHLQVHSSYSLL--EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
           +  L +H+    L  +G+L+   IL+        A++ TD  +L   ++   +A   G++
Sbjct: 3   YADLHIHT----LASDGSLAPAAILELARQKGLKALSFTDHESLSGYIQVYNQARELGLE 58

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
            + G ++ +      ++   G    PT P   +L 
Sbjct: 59  LLPGIEM-VTSFRGREIHLLGYNFDPTAP---VLA 89


>gi|196042098|ref|ZP_03109382.1| PHP domain protein [Bacillus cereus NVH0597-99]
 gi|196027034|gb|EDX65657.1| PHP domain protein [Bacillus cereus NVH0597-99]
          Length = 573

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|169235729|ref|YP_001688929.1| phosphotransferase domain-containing protein [Halobacterium
           salinarum R1]
 gi|167726795|emb|CAP13581.1| PHP domain protein [Halobacterium salinarum R1]
          Length = 227

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 12  VHLQVHSS--YSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           V L  HS   Y   +G   +  +L++  A    A+A+TD + + ++L  ++ A    +  
Sbjct: 4   VELHAHSERSY---DGRDPVEMLLEQAQAVGLDALAVTDHDEIDASLRAAELAADYDLVG 60

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           I G ++       L +  +   P     +  L
Sbjct: 61  IPGMEVTSADGHVLAIGVERAVPAGLPFAETL 92


>gi|138896258|ref|YP_001126711.1| hypothetical protein GTNG_2621 [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250215|ref|ZP_03148909.1| PHP domain protein [Geobacillus sp. G11MC16]
 gi|134267771|gb|ABO67966.1| PHP domain protein [Geobacillus thermodenitrificans NG80-2]
 gi|196210399|gb|EDY05164.1| PHP domain protein [Geobacillus sp. G11MC16]
          Length = 575

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA SL  + +         +AITD 
Sbjct: 340 LHMHSAWS--DGACSLEELAEACRRRGYQYMAITDH 373


>gi|30022628|ref|NP_834259.1| hypothetical protein BC4553 [Bacillus cereus ATCC 14579]
 gi|29898186|gb|AAP11460.1| DNA polymerase X family [Bacillus cereus ATCC 14579]
          Length = 573

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|65321919|ref|ZP_00394878.1| COG1796: DNA polymerase IV (family X) [Bacillus anthracis str.
           A2012]
 gi|165871528|ref|ZP_02216175.1| PHP domain protein [Bacillus anthracis str. A0488]
 gi|167635563|ref|ZP_02393875.1| PHP domain protein [Bacillus anthracis str. A0442]
 gi|170688225|ref|ZP_02879435.1| PHP domain protein [Bacillus anthracis str. A0465]
 gi|170708721|ref|ZP_02899159.1| PHP domain protein [Bacillus anthracis str. A0389]
 gi|177653152|ref|ZP_02935439.1| PHP domain protein [Bacillus anthracis str. A0174]
 gi|190567066|ref|ZP_03019982.1| PHP domain protein [Bacillus anthracis Tsiankovskii-I]
 gi|227817335|ref|YP_002817344.1| PHP domain protein [Bacillus anthracis str. CDC 684]
 gi|229603710|ref|YP_002868831.1| PHP domain protein [Bacillus anthracis str. A0248]
 gi|164712825|gb|EDR18355.1| PHP domain protein [Bacillus anthracis str. A0488]
 gi|167528983|gb|EDR91738.1| PHP domain protein [Bacillus anthracis str. A0442]
 gi|170126401|gb|EDS95290.1| PHP domain protein [Bacillus anthracis str. A0389]
 gi|170667731|gb|EDT18484.1| PHP domain protein [Bacillus anthracis str. A0465]
 gi|172081676|gb|EDT66747.1| PHP domain protein [Bacillus anthracis str. A0174]
 gi|190562057|gb|EDV16026.1| PHP domain protein [Bacillus anthracis Tsiankovskii-I]
 gi|227004335|gb|ACP14078.1| PHP domain protein [Bacillus anthracis str. CDC 684]
 gi|229268118|gb|ACQ49755.1| PHP domain protein [Bacillus anthracis str. A0248]
          Length = 573

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|228923297|ref|ZP_04086585.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836251|gb|EEM81604.1| PHP C-terminal domain protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 573

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|229048261|ref|ZP_04193829.1| PHP C-terminal domain protein [Bacillus cereus AH676]
 gi|228722986|gb|EEL74363.1| PHP C-terminal domain protein [Bacillus cereus AH676]
          Length = 573

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|229129837|ref|ZP_04258803.1| PHP C-terminal domain protein [Bacillus cereus BDRD-Cer4]
 gi|228653528|gb|EEL09400.1| PHP C-terminal domain protein [Bacillus cereus BDRD-Cer4]
          Length = 573

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|206969975|ref|ZP_03230929.1| PHP domain protein [Bacillus cereus AH1134]
 gi|206735663|gb|EDZ52831.1| PHP domain protein [Bacillus cereus AH1134]
          Length = 573

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 374


>gi|152976938|ref|YP_001376455.1| hypothetical protein Bcer98_3241 [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152025690|gb|ABS23460.1| PHP domain protein [Bacillus cytotoxicus NVH 391-98]
          Length = 572

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++    A     +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRARGYKFMAITDH 373


>gi|330817191|ref|YP_004360896.1| hypothetical protein bgla_1g23130 [Burkholderia gladioli BSR3]
 gi|327369584|gb|AEA60940.1| hypothetical protein bgla_1g23130 [Burkholderia gladioli BSR3]
          Length = 214

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KG+G   ++ I++    + PF S +D  SRV  K L ++ + +L  AG
Sbjct: 33  ALESVKGLGPVKSKAIIDERAKNGPFKSADDLASRV--KGLGQKSVANLEAAG 83


>gi|87309229|ref|ZP_01091366.1| DNA polymerase beta family protein [Blastopirellula marina DSM
           3645]
 gi|87288220|gb|EAQ80117.1| DNA polymerase beta family protein [Blastopirellula marina DSM
           3645]
          Length = 576

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+  S  +GA +L  ++          IAITD 
Sbjct: 345 LHMHTQAS--DGANTLAEMVAAAREKGLKFIAITDH 378


>gi|194468714|ref|ZP_03074698.1| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Kentucky str. CVM29188]
 gi|205358289|ref|ZP_02655218.2| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Kentucky str. CDC 191]
 gi|194455078|gb|EDX43917.1| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Kentucky str. CVM29188]
 gi|205335358|gb|EDZ22122.1| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Kentucky str. CDC 191]
          Length = 282

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++    G  +  I 
Sbjct: 5  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|148263726|ref|YP_001230432.1| phosphotransferase domain-containing protein [Geobacter
           uraniireducens Rf4]
 gi|146397226|gb|ABQ25859.1| PHP C-terminal domain protein [Geobacter uraniireducens Rf4]
          Length = 577

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS +S  +G  ++  ++    A     +AITD 
Sbjct: 340 LHVHSRWS--DGGHTIEELVAAAKARGLSYLAITDH 373


>gi|309782694|ref|ZP_07677415.1| cell division topological specificity factor MinE [Ralstonia sp.
           5_7_47FAA]
 gi|308918472|gb|EFP64148.1| cell division topological specificity factor MinE [Ralstonia sp.
           5_7_47FAA]
          Length = 580

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VH+  S  +G  SL  +  +        +A+TD 
Sbjct: 347 LHVHT--SASDGTASLEAMAAQARLLGYQYLAVTDH 380


>gi|304413777|ref|ZP_07395221.1| PHP domain-containing hypothetical protein [Candidatus Regiella
          insecticola LSR1]
 gi|304283868|gb|EFL92262.1| PHP domain-containing hypothetical protein [Candidatus Regiella
          insecticola LSR1]
          Length = 289

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H+  S  +G L+   ++ + A  +   +AITD +      E           ++ I 
Sbjct: 16 LHSHTVAS--DGLLTPTELVTRAALMRVGVLAITDHDTTNGLAEADAAIQQQNLALKLIH 73

Query: 72 GCQLD 76
          G ++ 
Sbjct: 74 GVEIS 78


>gi|323220710|gb|EGA05155.1| hypothetical protein SEEM0047_22880 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB102109-0047]
          Length = 293

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 16 LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSGLALNLIP 73

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 74 GVEISTVWENH 84


>gi|294621409|ref|ZP_06700580.1| putative phosphoesterase [Enterococcus faecium U0317]
 gi|291598982|gb|EFF30028.1| putative phosphoesterase [Enterococcus faecium U0317]
          Length = 271

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          L VHS YS   G      +L    A +   +AI D +     +E  ++
Sbjct: 5  LHVHSCYS--NGFFHPKELLSLATAQEINHLAIVDHHTFAG-IEAVKE 49


>gi|269217019|ref|ZP_06160873.1| putative histidinol phosphatase [Slackia exigua ATCC 700122]
 gi|269129558|gb|EEZ60642.1| putative histidinol phosphatase [Slackia exigua ATCC 700122]
          Length = 267

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H++YS  +GA S+  +  +       A   TD 
Sbjct: 10 LHAHTTYS--DGANSMEEMARRAVDLGFSAFGFTDH 43


>gi|239814617|ref|YP_002943527.1| hypothetical protein Vapar_1610 [Variovorax paradoxus S110]
 gi|239801194|gb|ACS18261.1| conserved hypothetical protein [Variovorax paradoxus S110]
          Length = 113

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS---KKLNRRVLESL 885
           L  IKGVG   ++ I++A  +  F    DF  RV     KK  +   E L
Sbjct: 31  LDGIKGVGPAMSKRILDARKEGEFKDWPDFMQRVKGVKEKKAGKLSAEGL 80


>gi|206577138|ref|YP_002239003.1| putative phosphoesterase [Klebsiella pneumoniae 342]
 gi|206566196|gb|ACI07972.1| putative phosphoesterase [Klebsiella pneumoniae 342]
          Length = 287

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 20/105 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +++ +     ++   AG+      
Sbjct: 12  LHSHTTAS--DGRLTPQELVHRAHEMRVGTLAITDHDSVAAIPAAREEIARAGLPLTLVN 69

Query: 70  --------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
                         I+G  +DI       +  + K        ++
Sbjct: 70  GVEISTLWENHEIHIVGLNIDIAHPTMTALLEEQKARRQLRGQMI 114


>gi|149173335|ref|ZP_01851965.1| DNA polymerase beta family protein [Planctomyces maris DSM 8797]
 gi|148847517|gb|EDL61850.1| DNA polymerase beta family protein [Planctomyces maris DSM 8797]
          Length = 573

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 78/260 (30%), Gaps = 54/260 (20%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLF-SA----LEFSQKACAA 65
           L +H+  +  +G  S+  + +   A     IAITD +    +        L    KA   
Sbjct: 341 LHMHT--TATDGTASILEMAEGAKAKGYQYIAITDHSKRVTMANGLDAKRLRAHWKAIEK 398

Query: 66  ------GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                 GIQ + G + DI    ++ + +   +    V +++       G ++        
Sbjct: 399 VQDKISGIQILKGIECDILEDGSMDLPDDVLSEADWVIAVLHY-----GLKQ-------- 445

Query: 120 YLLDQGKQSVRICLSWLQEIGTEGL-IM--LTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
                     +I    L  I    + I+  L+G   G    A    +     K    +  
Sbjct: 446 -------PQKQINQRLLNAIQNPNVSIIGHLSGRLIGKRPGADL--NYGEILKAAADYGT 496

Query: 177 LFGDRLYVNLQRHR---GYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMA 233
           +      + +  H      D    ++    A    +P+V   ++  +S  D   + +  A
Sbjct: 497 M------LEINAHPMRLDIDDIHAAR----AKELGIPIVINTDAHSVSGLDVMQYGIYQA 546

Query: 234 VAHSTVVSQKDRPRVTPDHY 253
                        +      
Sbjct: 547 RRAGLTKKDVANTKTWKQFQ 566


>gi|158522364|ref|YP_001530234.1| hypothetical protein Dole_2353 [Desulfococcus oleovorans Hxd3]
 gi|158511190|gb|ABW68157.1| PHP domain protein [Desulfococcus oleovorans Hxd3]
          Length = 212

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L +H+ +S  +G L  + +  +       AIAITD  
Sbjct: 4  LHMHTIFS--DGVLIPSELARRAEHKGLAAIAITDHG 38


>gi|16765065|ref|NP_460680.1| hypothetical protein STM1721 [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|20141852|sp|O54453|TRPH_SALTY RecName: Full=Protein trpH
 gi|16420251|gb|AAL20639.1| trpR controlled transcriptional unit in the 5' upstream region of
          the trp operon [Salmonella enterica subsp. enterica
          serovar Typhimurium str. LT2]
 gi|261246911|emb|CBG24728.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Typhimurium str. D23580]
 gi|267993666|gb|ACY88551.1| hypothetical protein STM14_2084 [Salmonella enterica subsp.
          enterica serovar Typhimurium str. 14028S]
 gi|301158249|emb|CBW17748.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Typhimurium str. SL1344]
 gi|323129993|gb|ADX17423.1| Protein trpH [Salmonella enterica subsp. enterica serovar
          Typhimurium str. 4/74]
          Length = 293

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 16 LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSGLALNLIP 73

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 74 GVEISTVWENH 84


>gi|290512943|ref|ZP_06552307.1| phosphoesterase [Klebsiella sp. 1_1_55]
 gi|289774556|gb|EFD82560.1| phosphoesterase [Klebsiella sp. 1_1_55]
          Length = 287

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 20/105 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +++ +     ++   AG+      
Sbjct: 12  LHSHTTAS--DGRLTPQELVHRAHEMRVGTLAITDHDSVAAIPAAREEIARAGLPLTLVN 69

Query: 70  --------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
                         I+G  +DI       +  + K        ++
Sbjct: 70  GVEISTLWENHEIHIVGLNIDIAHPTMTALLEEQKARRQLRGQMI 114


>gi|16760159|ref|NP_455776.1| hypothetical protein STY1329 [Salmonella enterica subsp. enterica
          serovar Typhi str. CT18]
 gi|29142070|ref|NP_805412.1| hypothetical protein t1634 [Salmonella enterica subsp. enterica
          serovar Typhi str. Ty2]
 gi|25323500|pir||AG0653 conserved hypothetical protein STY1329 [imported] - Salmonella
          enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502453|emb|CAD08410.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Typhi]
 gi|29137699|gb|AAO69261.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Typhi str. Ty2]
          Length = 293

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++    G  +  I 
Sbjct: 16 LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGLALNLIP 73

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 74 GVEISTVWENH 84


>gi|207856766|ref|YP_002243417.1| hypothetical protein SEN1312 [Salmonella enterica subsp. enterica
          serovar Enteritidis str. P125109]
 gi|206708569|emb|CAR32890.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Enteritidis str. P125109]
          Length = 293

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 16 LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSGLALNLIP 73

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 74 GVEISTVWENH 84


>gi|194450192|ref|YP_002045768.1| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL476]
 gi|197251221|ref|YP_002146305.1| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Agona str. SL483]
 gi|205356973|ref|ZP_02343528.2| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA29]
 gi|205358942|ref|ZP_02666232.2| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL486]
 gi|194408496|gb|ACF68715.1| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL476]
 gi|197214924|gb|ACH52321.1| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Agona str. SL483]
 gi|205325106|gb|EDZ12945.1| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA29]
 gi|205339093|gb|EDZ25857.1| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Heidelberg str. SL486]
          Length = 282

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++    G  +  I 
Sbjct: 5  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|194443247|ref|YP_002040975.1| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
 gi|194401910|gb|ACF62132.1| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Newport str. SL254]
          Length = 282

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++    G  +  I 
Sbjct: 5  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|67922806|ref|ZP_00516306.1| Helix-hairpin-helix motif [Crocosphaera watsonii WH 8501]
 gi|67855365|gb|EAM50624.1| Helix-hairpin-helix motif [Crocosphaera watsonii WH 8501]
          Length = 294

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 2/120 (1%)

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
           ++    ++  + +H     ++  +   +  HY  EF        +   E I    Q+  +
Sbjct: 158 IITGSHNWSASANHQNDETLLVIKNPLITRHYQQEFERLYNNSTLGIPEYINNKIQENIK 217

Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYS-LAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
                +        V   +  N      L  + G+G + A  I+EA   +PF SLED   
Sbjct: 218 -KCPSLSTLKTEENVIKIINLNTASLGELETLPGIGESLAERIIEAREAQPFSSLEDLTR 276


>gi|213416670|ref|ZP_03349814.1| hypothetical protein Salmonentericaenterica_01292 [Salmonella
          enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 92

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++    G  +  I 
Sbjct: 5  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|183985376|ref|YP_001853667.1| hypothetical protein MMAR_5407 [Mycobacterium marinum M]
 gi|183178702|gb|ACC43812.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 335

 Score = 49.8 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS +S  +G+  +  ++D  AA      A+TD 
Sbjct: 100 LHLHSEWS--DGSAPIEEMMDTAAALGHEYCALTDH 133


>gi|205359668|ref|ZP_02831544.2| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Weltevreden str. HI_N05-537]
 gi|205343638|gb|EDZ30402.1| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Weltevreden str. HI_N05-537]
          Length = 282

 Score = 49.8 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 5  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|150390417|ref|YP_001320466.1| phosphotransferase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149950279|gb|ABR48807.1| PHP C-terminal domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 276

 Score = 49.8 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 74/258 (28%), Gaps = 64/258 (24%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H++ S  +G LS + ++D   A     IAITD +++    E   ++            
Sbjct: 7   HTHTTAS--DGNLSPSQLIDYAVAKGLNGIAITDHDSINGLEEAQLQSRKYH-------D 57

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVL----L---------VSTAEGYQRLIEL------ 115
                   L   +  +        I +    L           T    + + +L      
Sbjct: 58  FYFIPGIELSTVHHNEEVHILGYDINVESPQLFNILQKLQDARTERAGKIISKLQKLGFI 117

Query: 116 VS------------------RMYLLDQGKQSVRICLSWLQEIGTEGLIM------LTGGS 151
           +S                     LL + K    + ++  ++   +G         LT   
Sbjct: 118 ISYEEVLERISTSGVIGRPHIANLLVEKKYIPSVSIA-FEKYLNQGCPAYVSRYKLTPFE 176

Query: 152 SGPI-----DRAFFFNSSQVAEKRLLTFKKLFGDRLY-VNLQRHRGYDRYRESQVVQLAY 205
           +  I      +A   +      K L     +    +  + +  H  +     SQ + +A 
Sbjct: 177 AVDIINRAGGQAVIAH--PGLLKDLHILHDILESNIAGIEVY-HSDHTTEHVSQFLDMAQ 233

Query: 206 THELPLVATNNSLFLSEE 223
            H L +  T  S F    
Sbjct: 234 KHNLGI--TGGSDFHCAS 249


>gi|205352605|ref|YP_002226406.1| hypothetical protein SG1393 [Salmonella enterica subsp. enterica
          serovar Gallinarum str. 287/91]
 gi|205272386|emb|CAR37266.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Gallinarum str. 287/91]
 gi|326627669|gb|EGE34012.1| PHP domain-containing protein [Salmonella enterica subsp.
          enterica serovar Gallinarum str. 9]
          Length = 293

 Score = 49.8 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 16 LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSGLALNLIP 73

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 74 GVEISTVWENH 84


>gi|319948348|ref|ZP_08022492.1| ATP-dependent DNA helicase RecG [Dietzia cinnamea P4]
 gi|319437979|gb|EFV92955.1| ATP-dependent DNA helicase RecG [Dietzia cinnamea P4]
          Length = 756

 Score = 49.8 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 985  ESVATIRGNNIRLAAMVVSKQQKK--TRKGSR--IGWVTFSEPAKEYEANFF 1032
            +    + G  + +   V + + +   T+KG    +  +T  +   E+   FF
Sbjct: 51   DKRQLVDGERVTVIGTVTTARTRTYHTKKGQPREMLTLTVEDGDTEFRVVFF 102


>gi|204927588|ref|ZP_03218789.1| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Javiana str. GA_MM04042433]
 gi|204322930|gb|EDZ08126.1| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Javiana str. GA_MM04042433]
          Length = 282

 Score = 49.8 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 5  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|297565200|ref|YP_003684172.1| GTP-binding protein Obg/CgtA [Meiothermus silvanus DSM 9946]
 gi|296849649|gb|ADH62664.1| GTP-binding protein Obg/CgtA [Meiothermus silvanus DSM 9946]
          Length = 415

 Score = 49.8 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 66/205 (32%), Gaps = 42/205 (20%)

Query: 836  YYSLAAI----------KGVGTTTARHIMEAS--------ADKPFDSLEDF---CSRVDS 874
             ++LA I          KG+G    RHI             ++P  + +         D 
Sbjct: 205  RFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAGERPVSNFQTLRAELRSYDP 264

Query: 875  KKLNRRVLESLVFAGALDCFGYSR--MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKG 932
              L+R  L +L     L+    +R   +L Q+   +   +    K   +  E +FA    
Sbjct: 265  DLLSRPALIALNKIDLLEEEEVTRLEAELSQTGLPVLAVSVLERKGLESLVEALFALVAA 324

Query: 933  TFSDKITLEKF-SVENSSVRFENEQRVLGFY-------------FSGHPLDV---YKPIL 975
                 +        E   V+    +   G Y               G  ++     + + 
Sbjct: 325  APKPALATPAPRPEEPQGVQVREVEE--GVYEVQAPQVERHLRRLKGDLMEATSYLQDLF 382

Query: 976  RKMGIKGYEESVATIRGNNIRLAAM 1000
            ++ G++   +S     G+ +RLA +
Sbjct: 383  KRYGVESALKSKGVRAGDTVRLAGL 407


>gi|294995166|ref|ZP_06800857.1| hypothetical protein Mtub2_11787 [Mycobacterium tuberculosis 210]
          Length = 311

 Score = 49.8 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +G+  +  ++   AA      A+TD 
Sbjct: 76  LHLHSNWS--DGSAPIEEMMATAAALGHQYCALTDH 109


>gi|282162979|ref|YP_003355364.1| putative phosphatase, PHP family [Methanocella paludicola SANAE]
 gi|282155293|dbj|BAI60381.1| putative phosphatase, PHP family [Methanocella paludicola SANAE]
          Length = 289

 Score = 49.8 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 12/73 (16%)

Query: 15 QVHSSYSLLEGALSLN-NILDKIAADQQPAIAITDTNNLFSALEFS----QKACAAGIQP 69
           VH+S+S  +G       ++   A+     ++ITD +     ++      + A +AGI+ 
Sbjct: 6  HVHTSHS--DGL-HPEAQVIRDAASAGISLLSITDHD----CVDAYPAALKLAKSAGIRL 58

Query: 70 IIGCQLDIDMQDN 82
          I G ++    +  
Sbjct: 59 IPGVEMTTKNEQG 71


>gi|240168333|ref|ZP_04746992.1| hypothetical protein MkanA1_03412 [Mycobacterium kansasii ATCC
           12478]
          Length = 335

 Score = 49.8 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +G++ +  ++   A       A+TD 
Sbjct: 100 LHLHSNWS--DGSVPIEEMMATAADLGHEYCALTDH 133


>gi|304404128|ref|ZP_07385790.1| PHP domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304347106|gb|EFM12938.1| PHP domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 288

 Score = 49.8 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 85/273 (31%), Gaps = 64/273 (23%)

Query: 15  QVHSSYSLL--EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
             H+    L  +G  +   ++         A+AITD + +    E   +    GI+ I G
Sbjct: 10  HTHT----LASDGTNAPAVVVRLAKEAGLAAVAITDHDTISGWAEAMAEGERIGIEVIPG 65

Query: 73  CQL-DIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY---QRLI--------------- 113
            +L  +    ++ +               L   + +G+   + L+               
Sbjct: 66  VELSTVMNGRDIHILGYWCNSDDEQWQERL--RSQQGFRGKRNLMMIERLQALGIDVTID 123

Query: 114 ELVSRMYLLD-QGKQSVRICLSWLQEIGTEGLI---MLTGGSS------GPIDRAFFFNS 163
           E+++       Q + + +I    L E+    LI   ++T          G    A+    
Sbjct: 124 EIIALARKHGKQVEGAEQIGRPHLAEV----LIARGVVTDIREAFDRYLGESGLAYCNPP 179

Query: 164 SQVAEKRLLTFKK-----------LFGDRLYVN-LQRHRG---------YDRYRESQVVQ 202
                + +   ++           L+GD   V  + RH           +D  +E +   
Sbjct: 180 RLQPFEAIDWIREAGGVSVIAHPGLYGDDELVEAIVRHGAQGIEAYHSDHDADQELRYEA 239

Query: 203 LAYTHELPLVATNNSLFLSEEDYEAHDVLMAVA 235
           +A  + L  + T  S F  E+        +   
Sbjct: 240 MAQRYGL--LVTGGSDFHGEKQGVVFHGPIGHR 270


>gi|302871310|ref|YP_003839946.1| hypothetical protein COB47_0645 [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574169|gb|ADL41960.1| hypothetical protein COB47_0645 [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 433

 Score = 49.8 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 2/88 (2%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +H+ YS      S +  +   A    P   I D + +  A EF      AGI   IG +
Sbjct: 48  HIHTFYSF--SPYSPSKAIYMAAKSGLPTAGIMDHDTIAGAQEFMAAGKLAGIATTIGVE 105

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
              D    L    +   P     + V +
Sbjct: 106 CRADFSKTLLFGKKINNPDQHSIAYVAI 133


>gi|257884189|ref|ZP_05663842.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257820027|gb|EEV47175.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
          Length = 271

 Score = 49.8 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          L VHS YS   G      +L    A +   +AI D +     +E  ++
Sbjct: 5  LHVHSCYS--NGFFHPKELLSLATAQEINHLAIVDHHTFAG-IEAVKE 49


>gi|210613571|ref|ZP_03289765.1| hypothetical protein CLONEX_01972 [Clostridium nexile DSM 1787]
 gi|210151119|gb|EEA82127.1| hypothetical protein CLONEX_01972 [Clostridium nexile DSM 1787]
          Length = 219

 Score = 49.8 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 15 QVH-SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-ACAAGIQPII- 71
           +H S++S  +  L L+ +++        AI ITD +++    E++++ +   G  PI  
Sbjct: 6  HMHESTFS-KDSFLKLDEMVELAKERGLGAICITDHDDM-GLKEYAKEYSEKTGF-PIFV 62

Query: 72 GCQL 75
          G + 
Sbjct: 63 GIEF 66


>gi|194735330|ref|YP_002114753.1| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. CVM19633]
 gi|197300994|ref|ZP_02662832.2| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. SL480]
 gi|238911887|ref|ZP_04655724.1| hypothetical protein SentesTe_12246 [Salmonella enterica subsp.
          enterica serovar Tennessee str. CDC07-0191]
 gi|194710832|gb|ACF90053.1| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. CVM19633]
 gi|197289199|gb|EDY28566.1| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. SL480]
          Length = 282

 Score = 49.8 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 5  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|284047274|ref|YP_003397614.1| PHP domain protein [Conexibacter woesei DSM 14684]
 gi|283951495|gb|ADB54239.1| PHP domain protein [Conexibacter woesei DSM 14684]
          Length = 592

 Score = 49.8 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 16/95 (16%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA------------LEFSQK 61
           L  H++ S  +G   +  + +   A     +AITD +                 +E    
Sbjct: 353 LHSHTTAS--DGRNEIEEMAEAAQALGYEYLAITDHSASHGFGDEVSAEQLEIQIERIHA 410

Query: 62  ACAA--GIQPIIGCQLDIDMQDNLKMTNQGKTPFP 94
           A AA  GI+ + G +++I    +L   ++      
Sbjct: 411 ANAAFPGIELLAGSEVNIMPDGSLDYPDELLARLD 445


>gi|330507627|ref|YP_004384055.1| DNA polymerase D, small subunit DP1 [Methanosaeta concilii GP-6]
 gi|328928435|gb|AEB68237.1| DNA polymerase D, small subunit DP1 [Methanosaeta concilii GP-6]
          Length = 540

 Score = 49.8 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 969  DVYKPIL-RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
               + IL R++  +  E    +  G  + L  MV+  +   T KG+R+  +   +P    
Sbjct: 170  AKIREILSRRINSRPIESLSKSTSGREVSLIGMVLDIRN--TSKGNRV--IELEDPTGMI 225

Query: 1028 EANF 1031
             A  
Sbjct: 226  VAVI 229


>gi|260773019|ref|ZP_05881935.1| hypothetical protein VIB_001481 [Vibrio metschnikovii CIP 69.14]
 gi|260612158|gb|EEX37361.1| hypothetical protein VIB_001481 [Vibrio metschnikovii CIP 69.14]
          Length = 290

 Score = 49.8 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 42/134 (31%), Gaps = 20/134 (14%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
           L  H++ S  +G  S   ++D+        +AITD + +          +A    I  I 
Sbjct: 5   LHSHTTAS--DGRFSPEQLIDRALEFNVDVLAITDHDTIDGLAPARAYIEAGQHPITLIN 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G +L    Q+              +               L +L++             +
Sbjct: 63  GIELSTVWQNKDIHIVGLNIDPDNIA--------------LTQLITE--QKQHRVGRAEL 106

Query: 132 CLSWLQEIGTEGLI 145
               L ++  EG++
Sbjct: 107 IAERLAKVTREGVL 120


>gi|195873181|ref|ZP_02696735.2| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Newport str. SL317]
 gi|200389821|ref|ZP_03216432.1| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Virchow str. SL491]
 gi|213163147|ref|ZP_03348857.1| hypothetical protein Salmoneentericaenterica_25223 [Salmonella
          enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213424438|ref|ZP_03357251.1| hypothetical protein SentesTyphi_01485 [Salmonella enterica
          subsp. enterica serovar Typhi str. E02-1180]
 gi|213855223|ref|ZP_03383463.1| hypothetical protein SentesT_14587 [Salmonella enterica subsp.
          enterica serovar Typhi str. M223]
 gi|289829087|ref|ZP_06546767.1| hypothetical protein Salmonellentericaenterica_21269 [Salmonella
          enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|195633902|gb|EDX52254.1| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Newport str. SL317]
 gi|199602266|gb|EDZ00812.1| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Virchow str. SL491]
          Length = 282

 Score = 49.8 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++    G  +  I 
Sbjct: 5  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|322614980|gb|EFY11905.1| hypothetical protein SEEM315_01816 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315996572]
 gi|322621426|gb|EFY18280.1| hypothetical protein SEEM971_11625 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-1]
 gi|322623232|gb|EFY20074.1| hypothetical protein SEEM973_05846 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-3]
 gi|322628522|gb|EFY25310.1| hypothetical protein SEEM974_16305 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-4]
 gi|322633686|gb|EFY30426.1| hypothetical protein SEEM201_01499 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-1]
 gi|322638506|gb|EFY35201.1| hypothetical protein SEEM202_14830 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-2]
 gi|322640824|gb|EFY37473.1| hypothetical protein SEEM954_09144 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 531954]
 gi|322645312|gb|EFY41840.1| hypothetical protein SEEM054_03159 [Salmonella enterica subsp.
          enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651805|gb|EFY48177.1| hypothetical protein SEEM675_03232 [Salmonella enterica subsp.
          enterica serovar Montevideo str. OH_2009072675]
 gi|322654298|gb|EFY50620.1| hypothetical protein SEEM965_10364 [Salmonella enterica subsp.
          enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659263|gb|EFY55511.1| hypothetical protein SEEM19N_12186 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 19N]
 gi|322662735|gb|EFY58942.1| hypothetical protein SEEM801_18177 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 81038-01]
 gi|322667654|gb|EFY63814.1| hypothetical protein SEEM507_07014 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671932|gb|EFY68053.1| hypothetical protein SEEM877_04051 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 414877]
 gi|322677022|gb|EFY73086.1| hypothetical protein SEEM867_17429 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 366867]
 gi|322680316|gb|EFY76355.1| hypothetical protein SEEM180_05890 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 413180]
 gi|322685255|gb|EFY81251.1| hypothetical protein SEEM600_09034 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 446600]
 gi|323195435|gb|EFZ80614.1| hypothetical protein SEEM581_00410 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609458-1]
 gi|323199314|gb|EFZ84408.1| hypothetical protein SEEM501_04654 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556150-1]
 gi|323204772|gb|EFZ89768.1| hypothetical protein SEEM460_05076 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609460]
 gi|323205932|gb|EFZ90895.1| hypothetical protein SEEM020_06039 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 507440-20]
 gi|323209960|gb|EFZ94869.1| hypothetical protein SEEM6152_14306 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556152]
 gi|323217257|gb|EGA01978.1| hypothetical protein SEEM0077_19775 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB101509-0077]
 gi|323227966|gb|EGA12118.1| hypothetical protein SEEM0055_13142 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB110209-0055]
 gi|323232121|gb|EGA16228.1| hypothetical protein SEEM0052_17274 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB111609-0052]
 gi|323234648|gb|EGA18735.1| hypothetical protein SEEM3312_15965 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009083312]
 gi|323238100|gb|EGA22159.1| hypothetical protein SEEM5258_03738 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009085258]
 gi|323243296|gb|EGA27315.1| hypothetical protein SEEM1156_03134 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315731156]
 gi|323248447|gb|EGA32382.1| hypothetical protein SEEM9199_22444 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2009159199]
 gi|323252553|gb|EGA36396.1| hypothetical protein SEEM8282_02211 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008282]
 gi|323255422|gb|EGA39188.1| hypothetical protein SEEM8283_12875 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008283]
 gi|323260824|gb|EGA44426.1| hypothetical protein SEEM8284_12334 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008284]
 gi|323267589|gb|EGA51072.1| hypothetical protein SEEM8285_08419 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008285]
 gi|323270945|gb|EGA54381.1| hypothetical protein SEEM8287_13329 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008287]
          Length = 282

 Score = 49.8 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 5  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|312912714|dbj|BAJ36688.1| hypothetical protein STMDT12_C17450 [Salmonella enterica subsp.
          enterica serovar Typhimurium str. T000240]
 gi|321224352|gb|EFX49415.1| putative metal-dependent phosphoesterases PHP family [Salmonella
          enterica subsp. enterica serovar Typhimurium str.
          TN061786]
          Length = 282

 Score = 49.8 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 5  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|238794707|ref|ZP_04638311.1| hypothetical protein yinte0001_18110 [Yersinia intermedia ATCC
           29909]
 gi|238725938|gb|EEQ17488.1| hypothetical protein yinte0001_18110 [Yersinia intermedia ATCC
           29909]
          Length = 316

 Score = 49.8 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 37/107 (34%), Gaps = 18/107 (16%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H++ S  +G L+ + ++ + A  +   +AITD +      E +         +Q I 
Sbjct: 36  LHSHTTAS--DGLLTPSALVIRAAQMRVGVLAITDHDTTAGLAEAATTIAQQQLALQLIA 93

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
           G ++    +++                             + +L+S 
Sbjct: 94  GVEISTLWENHEIHIVGLGIDTQHAS--------------ICKLLSE 126


>gi|205360264|ref|ZP_02682030.2| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Hadar str. RI_05P066]
 gi|205351027|gb|EDZ37658.1| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Hadar str. RI_05P066]
          Length = 282

 Score = 49.8 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++    G  +  I 
Sbjct: 5  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|304316214|ref|YP_003851359.1| PHP domain protein [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302777716|gb|ADL68275.1| PHP domain protein [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 572

 Score = 49.8 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH+ YS  +GA +L+ +++         I ITD 
Sbjct: 342 HVHTIYS--DGANTLSEMVNAARDRGYKIIGITDH 374


>gi|197262479|ref|ZP_03162553.1| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA23]
 gi|197240734|gb|EDY23354.1| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Saintpaul str. SARA23]
          Length = 282

 Score = 49.8 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 5  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|213612806|ref|ZP_03370632.1| hypothetical protein SentesTyp_09994 [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-2068]
          Length = 108

 Score = 49.8 bits (117), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++    G  +  I 
Sbjct: 5  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|296166989|ref|ZP_06849403.1| probable DNA polymerase beta chain [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295897669|gb|EFG77261.1| probable DNA polymerase beta chain [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 335

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +G+  ++ ++   AA      A+TD 
Sbjct: 100 LHLHSNWS--DGSAPIDEMMATAAALGHEYCALTDH 133


>gi|17545859|ref|NP_519261.1| hypothetical protein RSc1140 [Ralstonia solanacearum GMI1000]
 gi|17428153|emb|CAD14842.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000]
          Length = 286

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS--ALEFSQKACAAGIQPII 71
           L  HS  ++ +G L+   +  + AA      A+TD + +    A    + A + G+  + 
Sbjct: 14  LHCHS--TVSDGLLAPREVAARAAAHGVTLWALTDHDEVGGQAAAR--EAAESLGMDYLA 69

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           G ++ +                     +  L  T  G
Sbjct: 70  GVEISVTWAGRTLHIVGLGIDPDDAALVQGLARTRSG 106


>gi|198245413|ref|YP_002215420.1| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Dublin str. CT_02021853]
 gi|197939929|gb|ACH77262.1| putative phosphoesterase [Salmonella enterica subsp. enterica
          serovar Dublin str. CT_02021853]
 gi|326623167|gb|EGE29512.1| Polymerase and histidinol phosphatase, N-terminal domain protein
          [Salmonella enterica subsp. enterica serovar Dublin
          str. 3246]
          Length = 282

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 5  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|299067191|emb|CBJ38387.1| conserved protein of unknown function, PHP domain-like [Ralstonia
           solanacearum CMR15]
          Length = 286

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS--ALEFSQKACAAGIQPII 71
           L  HS  ++ +G L+   +  + AA      A+TD + +    A    + A + G+  + 
Sbjct: 14  LHCHS--TVSDGLLAPREVAARAAAHGVTLWALTDHDEVGGQAAAR--EAAESLGMDYLA 69

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           G ++ +                     +  L  T  G
Sbjct: 70  GVEISVTWAGRTLHIVGLGIDPDDAALVQGLARTRSG 106


>gi|213586721|ref|ZP_03368547.1| hypothetical protein SentesTyph_37755 [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-0664]
          Length = 269

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++    G  +  I 
Sbjct: 5  LHSHTTAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|308802708|ref|XP_003078667.1| unnamed protein product [Ostreococcus tauri]
 gi|116057120|emb|CAL51547.1| unnamed protein product [Ostreococcus tauri]
          Length = 189

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 8/59 (13%), Positives = 16/59 (27%), Gaps = 12/59 (20%)

Query: 974  ILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
             LR+                 + +   VV ++ +K  K       T  +     E   +
Sbjct: 66   ELRRKVGTTIA--------RRVEVCGYVVERRTRKDSK----VIFTLDDGTGCVECVVW 112


>gi|289673962|ref|ZP_06494852.1| error-prone DNA polymerase [Pseudomonas syringae pv. syringae
          FF5]
          Length = 32

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 6/34 (17%), Positives = 13/34 (38%), Gaps = 2/34 (5%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAA 38
          +     +  L   S++S   GA S   + ++   
Sbjct: 1  MTSE--YAELHCLSNFSFQRGASSARELFERAVR 32


>gi|284162549|ref|YP_003401172.1| PHP domain protein [Archaeoglobus profundus DSM 5631]
 gi|284012546|gb|ADB58499.1| PHP domain protein [Archaeoglobus profundus DSM 5631]
          Length = 215

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L +HS YS  +G  +++ I  +        IAI D + 
Sbjct: 5  LHIHSIYS--DGVATIDQIARRAKERGLKVIAIVDHSV 40


>gi|315180441|gb|ADT87355.1| metal-dependent phosphoesterase YciV [Vibrio furnissii NCTC 11218]
          Length = 283

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN---LFSALEFSQKACAAGIQPI 70
           L  H++ S  +G L+++ ++D+       A+AITD +    L  A           +  I
Sbjct: 6   LHSHTTAS--DGRLNVDQLIDRAVEFNLDALAITDHDTVDALAPA-RAYIAERGYSLTLI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
            G ++    Q+   +   G    P  P +  L
Sbjct: 63  NGIEISTVWQNK-DIHIVGLNIDPNHPELSAL 93


>gi|15610992|ref|NP_218373.1| hypothetical protein Rv3856c [Mycobacterium tuberculosis H37Rv]
 gi|15843487|ref|NP_338524.1| hypothetical protein MT3971 [Mycobacterium tuberculosis CDC1551]
 gi|31795030|ref|NP_857523.1| hypothetical protein Mb3886c [Mycobacterium bovis AF2122/97]
 gi|121639774|ref|YP_979998.1| hypothetical protein BCG_3919c [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148663724|ref|YP_001285247.1| hypothetical protein MRA_3896 [Mycobacterium tuberculosis H37Ra]
 gi|148825065|ref|YP_001289819.1| hypothetical protein TBFG_13892 [Mycobacterium tuberculosis F11]
 gi|167969980|ref|ZP_02552257.1| hypothetical protein MtubH3_18893 [Mycobacterium tuberculosis
           H37Ra]
 gi|215405913|ref|ZP_03418094.1| hypothetical protein Mtub0_19933 [Mycobacterium tuberculosis
           02_1987]
 gi|215413784|ref|ZP_03422452.1| hypothetical protein Mtub9_20550 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215432840|ref|ZP_03430759.1| hypothetical protein MtubE_19773 [Mycobacterium tuberculosis
           EAS054]
 gi|215448202|ref|ZP_03434954.1| hypothetical protein MtubT_20489 [Mycobacterium tuberculosis T85]
 gi|218755644|ref|ZP_03534440.1| hypothetical protein MtubG1_20419 [Mycobacterium tuberculosis GM
           1503]
 gi|219559957|ref|ZP_03539033.1| hypothetical protein MtubT1_22557 [Mycobacterium tuberculosis T17]
 gi|224992269|ref|YP_002646959.1| hypothetical protein JTY_3921 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253800907|ref|YP_003033909.1| hypothetical protein TBMG_03905 [Mycobacterium tuberculosis KZN
           1435]
 gi|254233345|ref|ZP_04926671.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|254366401|ref|ZP_04982445.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254548862|ref|ZP_05139309.1| hypothetical protein Mtube_00075 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260184786|ref|ZP_05762260.1| hypothetical protein MtubCP_01837 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260198911|ref|ZP_05766402.1| hypothetical protein MtubT4_01894 [Mycobacterium tuberculosis T46]
 gi|260203067|ref|ZP_05770558.1| hypothetical protein MtubK8_01937 [Mycobacterium tuberculosis K85]
 gi|289441297|ref|ZP_06431041.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289445458|ref|ZP_06435202.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289556126|ref|ZP_06445336.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289572114|ref|ZP_06452341.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289572511|ref|ZP_06452738.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289747699|ref|ZP_06507077.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289755990|ref|ZP_06515368.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289760025|ref|ZP_06519403.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289764045|ref|ZP_06523423.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|297636542|ref|ZP_06954322.1| hypothetical protein MtubK4_20555 [Mycobacterium tuberculosis KZN
           4207]
 gi|297733537|ref|ZP_06962655.1| hypothetical protein MtubKR_20700 [Mycobacterium tuberculosis KZN
           R506]
 gi|298527331|ref|ZP_07014740.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306778222|ref|ZP_07416559.1| hypothetical protein TMAG_00604 [Mycobacterium tuberculosis
           SUMu001]
 gi|306778750|ref|ZP_07417087.1| hypothetical protein TMBG_02397 [Mycobacterium tuberculosis
           SUMu002]
 gi|306786778|ref|ZP_07425100.1| hypothetical protein TMCG_01367 [Mycobacterium tuberculosis
           SUMu003]
 gi|306786907|ref|ZP_07425229.1| hypothetical protein TMDG_01814 [Mycobacterium tuberculosis
           SUMu004]
 gi|306791460|ref|ZP_07429762.1| hypothetical protein TMEG_00356 [Mycobacterium tuberculosis
           SUMu005]
 gi|306795528|ref|ZP_07433830.1| hypothetical protein TMFG_02094 [Mycobacterium tuberculosis
           SUMu006]
 gi|306801502|ref|ZP_07438170.1| hypothetical protein TMHG_02928 [Mycobacterium tuberculosis
           SUMu008]
 gi|306805709|ref|ZP_07442377.1| hypothetical protein TMGG_01403 [Mycobacterium tuberculosis
           SUMu007]
 gi|306970105|ref|ZP_07482766.1| hypothetical protein TMIG_00213 [Mycobacterium tuberculosis
           SUMu009]
 gi|306974339|ref|ZP_07487000.1| hypothetical protein TMJG_01113 [Mycobacterium tuberculosis
           SUMu010]
 gi|307082045|ref|ZP_07491215.1| hypothetical protein TMKG_01107 [Mycobacterium tuberculosis
           SUMu011]
 gi|307086656|ref|ZP_07495769.1| hypothetical protein TMLG_00352 [Mycobacterium tuberculosis
           SUMu012]
 gi|313660868|ref|ZP_07817748.1| hypothetical protein MtubKV_20695 [Mycobacterium tuberculosis KZN
           V2475]
 gi|1781100|emb|CAB06234.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|13883860|gb|AAK48338.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
 gi|31620628|emb|CAD96072.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|121495422|emb|CAL73909.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124603138|gb|EAY61413.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
 gi|134151913|gb|EBA43958.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148507876|gb|ABQ75685.1| hypothetical protein MRA_3896 [Mycobacterium tuberculosis H37Ra]
 gi|148723592|gb|ABR08217.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
 gi|224775385|dbj|BAH28191.1| hypothetical protein JTY_3921 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253322411|gb|ACT27014.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           1435]
 gi|289414216|gb|EFD11456.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289418416|gb|EFD15617.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
 gi|289440758|gb|EFD23251.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
 gi|289536942|gb|EFD41520.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289545869|gb|EFD49516.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289688227|gb|EFD55715.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289696577|gb|EFD64006.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289711551|gb|EFD75567.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289715589|gb|EFD79601.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298497125|gb|EFI32419.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308213378|gb|EFO72777.1| hypothetical protein TMAG_00604 [Mycobacterium tuberculosis
           SUMu001]
 gi|308328232|gb|EFP17083.1| hypothetical protein TMBG_02397 [Mycobacterium tuberculosis
           SUMu002]
 gi|308328630|gb|EFP17481.1| hypothetical protein TMCG_01367 [Mycobacterium tuberculosis
           SUMu003]
 gi|308336374|gb|EFP25225.1| hypothetical protein TMDG_01814 [Mycobacterium tuberculosis
           SUMu004]
 gi|308339972|gb|EFP28823.1| hypothetical protein TMEG_00356 [Mycobacterium tuberculosis
           SUMu005]
 gi|308343971|gb|EFP32822.1| hypothetical protein TMFG_02094 [Mycobacterium tuberculosis
           SUMu006]
 gi|308347755|gb|EFP36606.1| hypothetical protein TMGG_01403 [Mycobacterium tuberculosis
           SUMu007]
 gi|308351692|gb|EFP40543.1| hypothetical protein TMHG_02928 [Mycobacterium tuberculosis
           SUMu008]
 gi|308352380|gb|EFP41231.1| hypothetical protein TMIG_00213 [Mycobacterium tuberculosis
           SUMu009]
 gi|308356329|gb|EFP45180.1| hypothetical protein TMJG_01113 [Mycobacterium tuberculosis
           SUMu010]
 gi|308360285|gb|EFP49136.1| hypothetical protein TMKG_01107 [Mycobacterium tuberculosis
           SUMu011]
 gi|308363920|gb|EFP52771.1| hypothetical protein TMLG_00352 [Mycobacterium tuberculosis
           SUMu012]
 gi|323717440|gb|EGB26644.1| hypothetical protein TMMG_00352 [Mycobacterium tuberculosis
           CDC1551A]
 gi|326905693|gb|EGE52626.1| hypothetical protein TBPG_03654 [Mycobacterium tuberculosis W-148]
 gi|328460635|gb|AEB06058.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
           4207]
          Length = 335

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +G+  +  ++   AA      A+TD 
Sbjct: 100 LHLHSNWS--DGSAPIEEMMATAAALGHQYCALTDH 133


>gi|304317960|ref|YP_003853105.1| PHP domain protein [Thermoanaerobacterium thermosaccharolyticum
          DSM 571]
 gi|302779462|gb|ADL70021.1| PHP domain protein [Thermoanaerobacterium thermosaccharolyticum
          DSM 571]
          Length = 225

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
             VH++YS  +G   + ++   +       +AI+D N L  A+E 
Sbjct: 7  EFHVHTNYS-NDGFSKVPDLKKSLMKKGINIVAISDHNTLKGAVEA 51


>gi|323359562|ref|YP_004225958.1| metal-dependent phosphoesterase [Microbacterium testaceum
          StLB037]
 gi|323275933|dbj|BAJ76078.1| predicted metal-dependent phosphoesterase [Microbacterium
          testaceum StLB037]
          Length = 286

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 14 LQVHSSYSLLEGALSLNNIL-DKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          L +HS++S  +G      ++     +      A+TD +      E ++ A + G+  + G
Sbjct: 13 LHLHSTHS--DGT-EAPALVMAAAHSHGLRTAALTDHDTTSGWAEAAEAATSLGMTFVPG 69

Query: 73 CQLD 76
           +L 
Sbjct: 70 MELS 73


>gi|312880669|ref|ZP_07740469.1| PHP domain protein [Aminomonas paucivorans DSM 12260]
 gi|310783960|gb|EFQ24358.1| PHP domain protein [Aminomonas paucivorans DSM 12260]
          Length = 276

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS  S  +G LS  ++ +     +   +A+TD +      EF +    A +Q + G 
Sbjct: 6  LHIHSRCS--DGTLSPASLAELARRRRVSVVALTDHDTTSGQEEFRRACARAEVQSLTGV 63

Query: 74 QLD 76
          +L 
Sbjct: 64 ELS 66


>gi|260768738|ref|ZP_05877672.1| putative metal-dependent phosphoesterase YciV [Vibrio furnissii CIP
           102972]
 gi|260616768|gb|EEX41953.1| putative metal-dependent phosphoesterase YciV [Vibrio furnissii CIP
           102972]
          Length = 283

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN---LFSALEFSQKACAAGIQPI 70
           L  H++ S  +G L+++ ++D+       A+AITD +    L  A           +  I
Sbjct: 6   LHSHTTAS--DGRLNVDQLIDRAVEFNLDALAITDHDTVDALAPA-RAYIAERGYSLTLI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
            G ++    Q+   +   G    P  P +  L
Sbjct: 63  NGIEISTVWQNK-DIHIVGLNIDPNHPELSAL 93


>gi|169627202|ref|YP_001700851.1| hypothetical protein MAB_0097 [Mycobacterium abscessus ATCC 19977]
 gi|169239169|emb|CAM60197.1| Conserved hypothetical protein (PHP domain protein) [Mycobacterium
           abscessus]
          Length = 336

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +G++ +  ++    A      A+TD 
Sbjct: 100 LHLHSNWS--DGSVPIEEMMSTAKALGHEYCALTDH 133


>gi|121605696|ref|YP_983025.1| hypothetical protein Pnap_2802 [Polaromonas naphthalenivorans CJ2]
 gi|120594665|gb|ABM38104.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]
          Length = 119

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSR---VDSKKLNRRVLESLVFAGA 890
           L  IKGVG  T++ I+       F S +DF +R   V  K   +   E +  AGA
Sbjct: 31  LDGIKGVGPATSQRIVAERKKSEFKSWDDFIARVKGVGEKNAAKFSAEGMTVAGA 85


>gi|90581220|ref|ZP_01237018.1| putative metal-dependent phosphoesterase [Vibrio angustum S14]
 gi|90437591|gb|EAS62784.1| putative metal-dependent phosphoesterase [Vibrio angustum S14]
          Length = 296

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H++ S  +G L+   ++ +    +   +AITD + +    E           I  I 
Sbjct: 5   LHSHTTAS--DGRLTPQELVRRAVDMRVDILAITDHDTVAGLHEAHTVIEQEALPITLIN 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           G ++    Q N  +   G    P  P++V
Sbjct: 63  GIEISTVWQ-NFDIHIVGLNIDPQNPTLV 90


>gi|253584021|ref|ZP_04861219.1| histidinol phosphate phosphatase HisJ family [Fusobacterium
          varium ATCC 27725]
 gi|251834593|gb|EES63156.1| histidinol phosphate phosphatase HisJ family [Fusobacterium
          varium ATCC 27725]
          Length = 268

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           VHS +S  +    +  I+ K  +     IAITD 
Sbjct: 7  HVHSEFS-GDSTQDMEEIVQKAISLGLQEIAITDH 40


>gi|225351500|ref|ZP_03742523.1| hypothetical protein BIFPSEUDO_03096 [Bifidobacterium
          pseudocatenulatum DSM 20438]
 gi|225157844|gb|EEG71127.1| hypothetical protein BIFPSEUDO_03096 [Bifidobacterium
          pseudocatenulatum DSM 20438]
          Length = 308

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            H+ +S  +G  +   +L +  A +   +AI D +      +    +    +  + G +
Sbjct: 17 HCHTVFS--DGTETPRALLQEARALRLHGVAIADHDTTSGWQDALAASREVRLPLLRGTE 74

Query: 75 LDIDMQD 81
          +    + 
Sbjct: 75 ITAVDES 81


>gi|89074054|ref|ZP_01160555.1| putative metal-dependent phosphoesterase [Photobacterium sp. SKA34]
 gi|89050192|gb|EAR55703.1| putative metal-dependent phosphoesterase [Photobacterium sp. SKA34]
          Length = 296

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H++ S  +G L+   ++ +    +   +AITD + +    E           I  I 
Sbjct: 5   LHSHTTAS--DGRLTPQELVRRAVDMRVDILAITDHDTVAGLHEAHTVIEQEALPITLIN 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           G ++    Q N  +   G    P  P++V  
Sbjct: 63  GIEISTVWQ-NFDIHIVGLNIDPQNPTLVAF 92


>gi|167581673|ref|ZP_02374547.1| hypothetical protein BthaT_26249 [Burkholderia thailandensis TXDOH]
          Length = 202

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KG+G   ++ I++    + PF   +D  +RV  K L  + + +L  AG
Sbjct: 33  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRV--KGLGAKSVANLEAAG 83


>gi|83720464|ref|YP_442728.1| hypothetical protein BTH_I2207 [Burkholderia thailandensis E264]
 gi|167619790|ref|ZP_02388421.1| hypothetical protein BthaB_26027 [Burkholderia thailandensis Bt4]
 gi|257138940|ref|ZP_05587202.1| hypothetical protein BthaA_06975 [Burkholderia thailandensis E264]
 gi|83654289|gb|ABC38352.1| hypothetical protein BTH_I2207 [Burkholderia thailandensis E264]
          Length = 199

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KG+G   ++ I++    + PF   +D  +RV  K L  + + +L  AG
Sbjct: 33  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRV--KGLGAKSVANLEAAG 83


>gi|238754968|ref|ZP_04616317.1| hypothetical protein yruck0001_15200 [Yersinia ruckeri ATCC
          29473]
 gi|238706827|gb|EEP99195.1| hypothetical protein yruck0001_15200 [Yersinia ruckeri ATCC
          29473]
          Length = 303

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ + A+ +   +AITD +      E +Q        ++ I 
Sbjct: 16 LHSHTTAS--DGLLTPTQLVVRAASMRVGVLAITDHDTTGGLAEAAQAIKEQHLPLRLIN 73

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 74 GVEVSTLWENH 84


>gi|218295448|ref|ZP_03496261.1| PHP domain protein [Thermus aquaticus Y51MC23]
 gi|218244080|gb|EED10606.1| PHP domain protein [Thermus aquaticus Y51MC23]
          Length = 575

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           LQVHS+YS  +G  +L  +           +A+TD 
Sbjct: 341 LQVHSTYS--DGQNTLEELWQAARELGYEYLAVTDH 374


>gi|226325358|ref|ZP_03800876.1| hypothetical protein COPCOM_03159 [Coprococcus comes ATCC 27758]
 gi|225206101|gb|EEG88455.1| hypothetical protein COPCOM_03159 [Coprococcus comes ATCC 27758]
          Length = 223

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 24 EGALSLNNILDKIAADQQPAIAITDTNNLFSALEF-SQKACAAGIQPII-GCQLD 76
          +  L L N+++         I ITD +++    EF ++ +   G  PI  G +  
Sbjct: 11 DSFLRLENMVEIAKHRGLDGICITDHDSM-GLKEFAAEYSEKTGF-PIFVGIEFY 63


>gi|206889853|ref|YP_002248452.1| PHP domain protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741791|gb|ACI20848.1| PHP domain protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 216

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L +HS +S  +G L    I+ +  A    A+AITD 
Sbjct: 4  LHIHSVFS--DGELIPAEIIRRAEAIGYKALAITDH 37


>gi|126465640|ref|YP_001040749.1| phosphotransferase domain-containing protein [Staphylothermus
           marinus F1]
 gi|126014463|gb|ABN69841.1| PHP C-terminal domain protein [Staphylothermus marinus F1]
          Length = 228

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 8/92 (8%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC------AAGIQ 68
            +HS+YS  +G  S   I+          I+ITD N+   ++  S+ A          + 
Sbjct: 9   HIHSTYS--DGRASPKEIILTAIYKGLNIISITDHNSFQGSIIASRLAKDLVREYDEQLL 66

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
            IIG ++  D  D L    +       +  ++
Sbjct: 67  VIIGNEVRTDKGDILVYCYEPIDVPRRIDYLI 98


>gi|262276081|ref|ZP_06053890.1| putative metal-dependent phosphoesterase [Grimontia hollisae CIP
          101886]
 gi|262219889|gb|EEY71205.1| putative metal-dependent phosphoesterase [Grimontia hollisae CIP
          101886]
          Length = 291

 Score = 49.4 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---IQPI 70
          L  H++ S  +G  +   ++ +    +   +AITD + +    E  + A A     +  I
Sbjct: 5  LHSHTTAS--DGRFTPEQLVKRAVDFRVNVLAITDHDTVAGLDEA-KAAVARDKLPLHLI 61

Query: 71 IGCQLD 76
           G ++ 
Sbjct: 62 DGIEIS 67


>gi|78779304|ref|YP_397416.1| phosphoesterase PHP-like [Prochlorococcus marinus str. MIT 9312]
 gi|78712803|gb|ABB49980.1| Phosphoesterase PHP-like protein [Prochlorococcus marinus str.
          MIT 9312]
          Length = 215

 Score = 49.4 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 28/71 (39%), Gaps = 15/71 (21%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI------- 67
            H+ +S  +G+L    +L++   +    ++ITD +     ++  +      +       
Sbjct: 25 HCHTKFS--DGSLEPYELLEQAYKNNLKFLSITDHHT----IKAHEYIKKNNLLKNYPKD 78

Query: 68 --QPIIGCQLD 76
              I G +++
Sbjct: 79 SFTLISGIEIN 89


>gi|257388033|ref|YP_003177806.1| PHP domain protein [Halomicrobium mukohataei DSM 12286]
 gi|257170340|gb|ACV48099.1| PHP domain protein [Halomicrobium mukohataei DSM 12286]
          Length = 228

 Score = 49.4 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 12 VHLQVHSSYSLL-EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          V L  HS  SL  +G   +  +L++  A    A+A+TD + + ++LE ++ A   G+  I
Sbjct: 4  VELHAHS--SLSYDGRDPVELLLEQAEAVGLDALAVTDHDEIDASLEAARLAPEYGLIGI 61

Query: 71 IGCQLD 76
           G ++ 
Sbjct: 62 PGAEIS 67


>gi|294141572|ref|YP_003557550.1| TrpH family protein [Shewanella violacea DSS12]
 gi|293328041|dbj|BAJ02772.1| TrpH family protein [Shewanella violacea DSS12]
          Length = 291

 Score = 49.4 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
          L  H+  S  +G L+ + ++++   +     AITD +      E  
Sbjct: 10 LHSHT--SASDGQLTPSELIERAIGNGVQMFAITDHDTTAGLAEAH 53


>gi|78222692|ref|YP_384439.1| glycosyl transferase, group 1:PHP-like [Geobacter metallireducens
           GS-15]
 gi|78193947|gb|ABB31714.1| Glycosyl transferase, group 1:PHP-like protein [Geobacter
           metallireducens GS-15]
          Length = 803

 Score = 49.4 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 68/226 (30%), Gaps = 76/226 (33%)

Query: 14  LQVHSSYS-------LL-----EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
           L VHSS+S       L      E   S  +I D   A     +AITD N +  ALE    
Sbjct: 9   LHVHSSHSNKPTYWALRKFKCPESFTSPRHIYDTAKAAGMDYVAITDHNTITGALE---- 64

Query: 62  ACAA--GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQR-----LIE 114
             A   G+  IIG +L     ++                +V L     G +      L++
Sbjct: 65  -IAHLPGV--IIGAELTSYFPEDGCKV-----------HVVAL-----GLRESVFQDLMQ 105

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
           L       +            L     E  I         +    +  + +++   +   
Sbjct: 106 L-----RRNVF---------ELASYLHEKRIA------HFLAHPLYAQNDKLSADHIEKL 145

Query: 175 KKLFGDRLYVNLQR-------HRGYDRYRE----SQVVQLAYTHEL 209
             LF     + ++        +   D         ++ +LA  H +
Sbjct: 146 LLLFNT---IEVRNGARAKRFNGFTDELLNTLTPERIQRLAEKHGI 188


>gi|86147037|ref|ZP_01065354.1| putative metal-dependent phosphoesterase YciV [Vibrio sp. MED222]
 gi|85835102|gb|EAQ53243.1| putative metal-dependent phosphoesterase YciV [Vibrio sp. MED222]
          Length = 284

 Score = 49.4 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 88/283 (31%), Gaps = 55/283 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H++ S  +G L+   ++D+       A+AITD +      E           IQ I 
Sbjct: 5   LHSHTTAS--DGRLTPPELIDRALGFNIEALAITDHDTTDGLAEARSYIADNNLPIQLIN 62

Query: 72  GCQ--------------LDIDMQDNLKMTNQGKTPFPTVPSIVLLVS-----TAEGYQRL 112
           G +              L++D +         +     V    ++       T EG    
Sbjct: 63  GIEISTVWQNKDIHIVGLNVDPESPELKALIEQQKQHRVGRAEMIAQRLEKATREGVLEE 122

Query: 113 IEL------VSRMY----LLDQGKQSV--RICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
           ++L      ++R +    L+D G      ++   +L      G +  T  S      A  
Sbjct: 123 VKLIAGDAPITRAHFAKWLVDNGYAKTMQQVFKKFLTR-NNPGYVPPTWCSMSDAVTAIH 181

Query: 161 FNS--------------SQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYT 206
                            ++  ++ L  F +  GD   + + + +   + R   +   A  
Sbjct: 182 AAGGQAVLAHPARYGLTAKWVKRLLAAFVEANGDA--MEVAQPQQAQQER-RTLADYAIQ 238

Query: 207 HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
           +   L+A+  S F     +      + +        KD    T
Sbjct: 239 Y--KLLASQGSDFHYPSPWMELGRNLWLPSGVEEVWKDWEFQT 279


>gi|146295903|ref|YP_001179674.1| hypothetical protein Csac_0867 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409479|gb|ABP66483.1| hypothetical protein Csac_0867 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 436

 Score = 49.4 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 4/89 (4%)

Query: 15  QVHSSYSLL-EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            +H+ YS            + K ++   P   I D + +  A+EF +    A I   IG 
Sbjct: 51  HIHTFYSFSPYSPSKAI-WMAKASSL--PTAGIMDHDTVAGAIEFIEAGKIAQIATTIGV 107

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           +   D         +   P     + + +
Sbjct: 108 ECRADFSKTPLNGKKINNPDQDSIAYIAI 136


>gi|187924970|ref|YP_001896612.1| hypothetical protein Bphyt_2994 [Burkholderia phytofirmans PsJN]
 gi|187716164|gb|ACD17388.1| helix-hairpin-helix motif [Burkholderia phytofirmans PsJN]
          Length = 121

 Score = 49.4 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  IKG+G   A+ I+E   A  PF    D   RV  K +    +E L
Sbjct: 31  ALRGIKGIGPAKAKAILEERSAHGPFKDPADLGKRV--KGMGGHTVERL 77


>gi|62180288|ref|YP_216705.1| hypothetical protein SC1718 [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|62127921|gb|AAX65624.1| trpR controlled transcriptional unit in the 5' upstream region of
          the trp operon [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|322714762|gb|EFZ06333.1| trpR controlled transcriptional unit in the 5' upstream region of
          the trp operon [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. A50]
          Length = 293

 Score = 49.4 bits (116), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H+  S  +G L+   ++ +    +   +AITD +   +     ++    G  +  I 
Sbjct: 16 LHSHTMAS--DGLLTPETLVHRAVEMRVGTLAITDHDTTAAIPAAREEISRCGLALNLIP 73

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 74 GVEISTVWENH 84


>gi|303257825|ref|ZP_07343835.1| PHP domain protein [Burkholderiales bacterium 1_1_47]
 gi|302859428|gb|EFL82509.1| PHP domain protein [Burkholderiales bacterium 1_1_47]
          Length = 281

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS++S  +G      ++ +   +    I++TD +           A   G+Q + G 
Sbjct: 9  LHMHSTFS--DGVEEPEELVIRAKNNGVELISLTDHDETGGLERMKAAAAQHGLQFVNGV 66

Query: 74 QLDIDMQD 81
          ++  D  +
Sbjct: 67 EISADYGE 74


>gi|325663090|ref|ZP_08151540.1| hypothetical protein HMPREF0490_02280 [Lachnospiraceae bacterium
          4_1_37FAA]
 gi|325470544|gb|EGC73774.1| hypothetical protein HMPREF0490_02280 [Lachnospiraceae bacterium
          4_1_37FAA]
          Length = 219

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 11 FVHLQVH--SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE-FSQKACAAGI 67
          F+ L +H  + YS  +  L L  I++        A+ ITD +++    E  ++ +   G 
Sbjct: 2  FIDLHMHECT-YS-KDSHLKLEEIVELAKKRGLGAVCITDHDDM-GLKEYAAEYSEKTGF 58

Query: 68 QPII-GCQL 75
           PI  G + 
Sbjct: 59 -PIFVGIEF 66


>gi|167768606|ref|ZP_02440659.1| hypothetical protein CLOSS21_03165 [Clostridium sp. SS2/1]
 gi|167710130|gb|EDS20709.1| hypothetical protein CLOSS21_03165 [Clostridium sp. SS2/1]
 gi|291560559|emb|CBL39359.1| Predicted metal-dependent phosphoesterases (PHP family)
          [butyrate-producing bacterium SSC/2]
          Length = 74

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  H+   L +GA+ ++ I+          IAI+D  +  S  E  +     G+ 
Sbjct: 5  LHCHTV--LSDGAMRVDQIMPYAKRIGLDYIAISDHESTHSIPEAVRLGKELGVH 57


>gi|297617350|ref|YP_003702509.1| PHP domain protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145187|gb|ADI01944.1| PHP domain protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 290

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 76/270 (28%), Gaps = 83/270 (30%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H++ S  +GA S   ++ + AA     I+  D  ++    +  + A   G++ I G 
Sbjct: 8   LHLHTTAS--DGATSALELVHQAAAMGLKTISFCDHESIEGYKQALETAEELGLELIPGV 65

Query: 74  QL--------------DIDMQDNLKMTNQGKTPFPTVPSIVLLVS------TAEGY---- 109
           +L               +D    +  +   +          ++           GY    
Sbjct: 66  ELLTMHEGREIHLLGYYVDPDSPVLNSWLKELREDRN----VIAEQMVDKFNKHGYDIKF 121

Query: 110 --------------QR--LIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSG 153
                         +   L  L+   Y+  +  + + I   +L + G   +         
Sbjct: 122 ERVKEIATDNVAIGKNHFLFALIEAGYINTKD-EIIHILRDYLAQHGLAHV--------- 171

Query: 154 PIDRAFFFNSSQVAEKRLLTFKKLF---------GDRLYVNLQRH------------RGY 192
                F  N    A + ++    +           D L ++L RH               
Sbjct: 172 ----DFSKNPYYEAVEIIIECGGIPVLAHPGLIRDDHLVLDLLRHPKLGLEVYYYYLGPD 227

Query: 193 DRYRESQVVQLAYTHELPLVATNNSLFLSE 222
                 +   LA    L  V T  S +   
Sbjct: 228 AEKLRQRYYTLARERNL--VMTGGSDYHGR 255


>gi|301119415|ref|XP_002907435.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262105947|gb|EEY63999.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 318

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 9/69 (13%)

Query: 10  SFVHLQVHSSYSLL-EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            F HL      S+  +G    + ++ K AA+    +++TD + +    E    A   G+ 
Sbjct: 82  DF-HLH-----SICSDGKFKPSGVIAKAAANGVTFMSLTDHDTMAGVSEAIAAAQKLGV- 134

Query: 69  PII-GCQLD 76
            +  G ++ 
Sbjct: 135 LVFPGVEIS 143


>gi|293401783|ref|ZP_06645924.1| putative PHP domain protein [Erysipelotrichaceae bacterium
          5_2_54FAA]
 gi|291304735|gb|EFE45983.1| putative PHP domain protein [Erysipelotrichaceae bacterium
          5_2_54FAA]
          Length = 295

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-AGIQPIIG 72
          L +HS YS+ +G  S+  + ++   +    +AI D N+               G+Q I  
Sbjct: 6  LHMHSQYSI-DGEFSVKELCEQANHNGLRVMAIADHNST----RAYHDVTDTKGVQLIPA 60

Query: 73 CQLDIDMQDN 82
           +LD   Q +
Sbjct: 61 IELDCTFQGH 70


>gi|284030507|ref|YP_003380438.1| PHP domain-containing protein [Kribbella flavida DSM 17836]
 gi|283809800|gb|ADB31639.1| PHP domain protein [Kribbella flavida DSM 17836]
          Length = 351

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS +S  +G   +  +    A      +A+TD 
Sbjct: 113 LHLHSDWS--DGGSPIEEMARTAARLGHRYMALTDH 146


>gi|94969416|ref|YP_591464.1| DNA polymerase X family protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551466|gb|ABF41390.1| DNA polymerase X family protein [Candidatus Koribacter versatilis
           Ellin345]
          Length = 584

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 71/216 (32%), Gaps = 46/216 (21%)

Query: 24  EGALSLNNILDKIAADQQPAIAITDTN-NLF---S-----ALEFSQKACAA-----GIQP 69
           +G  ++  +     A     IAITD + NL          ALE  ++   A     GI  
Sbjct: 356 DGRNTIEEMAQAAKARGYEYIAITDHSKNLAMANGLDDRRALEHIKRIRRASDQLEGI-T 414

Query: 70  II-GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQG-KQ 127
           I  G + DI     + ++++            +L          +++V    +     ++
Sbjct: 415 IFAGIECDILADGAMDLSDE------------VLAQ--------MDIV-IASVHSHFSQE 453

Query: 128 SVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQ 187
              +    L+ I    + +L     G             A       K     R+ + L 
Sbjct: 454 RAEMTERVLKAIANPHVSLL-----GHPTGRLLLRRDAYALDMDAVMKAAAQHRVAMEL- 507

Query: 188 RHRGYDRYRESQV-VQLAYTHELPLVATNNSLFLSE 222
            +   DR   S V +++A    +PLV   ++   S 
Sbjct: 508 -NASPDRLDLSDVHLRMARERGIPLVINTDAHHTSH 542


>gi|313674911|ref|YP_004052907.1| php domain protein [Marivirga tractuosa DSM 4126]
 gi|312941609|gb|ADR20799.1| PHP domain protein [Marivirga tractuosa DSM 4126]
          Length = 570

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS+YS  +G  SL  +           + I+D 
Sbjct: 331 LHNHSTYS--DGKNSLEEMAQYCKDLGYEYLGISDH 364


>gi|18978234|ref|NP_579591.1| DNA-binding protein [Pyrococcus furiosus DSM 3638]
 gi|18894049|gb|AAL81986.1| DNA-binding protein [Pyrococcus furiosus DSM 3638]
          Length = 205

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV-----DSKKLNRRVLESL 885
           SL  + G+G      I+E    KPF+S ED   RV       K + +R+LE L
Sbjct: 135 SLELLPGIGKKHMWEIIEEREKKPFESFEDLKKRVKGLPDPVKMIAKRILEEL 187


>gi|294101300|ref|YP_003553158.1| PHP domain protein [Aminobacterium colombiense DSM 12261]
 gi|293616280|gb|ADE56434.1| PHP domain protein [Aminobacterium colombiense DSM 12261]
          Length = 275

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          F+ L +HS+ S  +G ++   +  K  +      ++TD +       F +      ++ +
Sbjct: 3  FIDLHLHSTCS--DGTITPRALAFKAKSQGLSVASLTDHDTTEGVKAFLKTCARREVRGV 60

Query: 71 IGCQLDIDMQD 81
           G +L  D   
Sbjct: 61 AGVELSADFHS 71


>gi|187935455|ref|YP_001886489.1| PHP domain protein [Clostridium botulinum B str. Eklund 17B]
 gi|187723608|gb|ACD24829.1| PHP domain protein [Clostridium botulinum B str. Eklund 17B]
          Length = 231

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          + K   F    +HS+ S  +G  +   +++         I++TD NN     E   +   
Sbjct: 1  MYKKGDF---HIHSTSS--DGGYTPKQVVNFAKKRGVDIISLTDHNNTCGIDESILEGEK 55

Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTV 96
           G++ I G +L    ++  ++   G     + 
Sbjct: 56 IGVKVIPGVELSTKHKNGSRVHILGYFKDESY 87


>gi|197285201|ref|YP_002151073.1| hypothetical protein PMI1342 [Proteus mirabilis HI4320]
 gi|227355626|ref|ZP_03840020.1| PHP family metal-dependent phosphoesterase [Proteus mirabilis ATCC
           29906]
 gi|194682688|emb|CAR42841.1| conserved hypothetical protein [Proteus mirabilis HI4320]
 gi|227164233|gb|EEI49126.1| PHP family metal-dependent phosphoesterase [Proteus mirabilis ATCC
           29906]
          Length = 286

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 4/93 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--SQKACAAGIQPII 71
           L  H++ S  +G LS + ++D+    Q   +AITD +   +           +  +  I 
Sbjct: 14  LHSHTTAS--DGELSPDELIDRAIEKQITVLAITDHDTTAAIQPAKNYIAEKSLPLTLIS 71

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS 104
           G ++    ++        +           L  
Sbjct: 72  GVEISTLWENIEIHIVGLQIDIEHQAMTTCLAK 104


>gi|170681023|ref|YP_001743921.1| putative phosphoesterase [Escherichia coli SMS-3-5]
 gi|170518741|gb|ACB16919.1| putative phosphoesterase [Escherichia coli SMS-3-5]
          Length = 293

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGCLTPEALVRRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|302878815|ref|YP_003847379.1| PHP domain-containing protein [Gallionella capsiferriformans
          ES-2]
 gi|302581604|gb|ADL55615.1| PHP domain protein [Gallionella capsiferriformans ES-2]
          Length = 282

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+  + +G L+   ++++        +A+TD ++     E    A   G+  I G 
Sbjct: 6  LHCHSN--ISDGTLTPTEVVERAFGRGVKMLALTDHDDTDGLDEARAVASGHGMIFINGV 63

Query: 74 QLDIDMQDN 82
          ++ +  + +
Sbjct: 64 EISVTWRKH 72


>gi|84489978|ref|YP_448210.1| hypothetical protein Msp_1186 [Methanosphaera stadtmanae DSM
          3091]
 gi|84373297|gb|ABC57567.1| predicted hydrolase [Methanosphaera stadtmanae DSM 3091]
          Length = 223

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          + ++   + L  HS +S  +G L  + +  +       A+AITD 
Sbjct: 1  MSENKR-IDLHTHSIFS--DGELLPSELARRADVLGHKALAITDH 42


>gi|323187497|gb|EFZ72806.1| PHP domain protein [Escherichia coli RN587/1]
          Length = 286

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H+  ++ +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 5  LHSHT--TVSDGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|255025012|ref|ZP_05296998.1| DNA polymerase III PolC [Listeria monocytogenes FSL J1-208]
          Length = 160

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 34/153 (22%)

Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
           +        +    K   Y F K+HAAAY +++ + A+ K HYP+ F A   T+  D+ +
Sbjct: 8   MMANKVPLWYIESCKKIKYMFPKAHAAAYVLMAVRIAYFKVHYPLYFYATYFTVRADDFD 67

Query: 801 KIKK---------------------------------FCQDARQFNIQIMPPSVNTPCVD 827
                                                   +            +     D
Sbjct: 68  LTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHFQKVDLYKSSAD 127

Query: 828 -FKVGDNRIYYSLAAIKGVGTTTARHIMEASAD 859
            F +  + +     AI  +GT  A+ I+ A  +
Sbjct: 128 EFLIDGDSLIPPFNAIPSLGTNVAKQIVAAREN 160


>gi|15615669|ref|NP_243973.1| hypothetical protein BH3107 [Bacillus halodurans C-125]
 gi|10175729|dbj|BAB06826.1| DNA-dependent DNA polymerase beta chain [Bacillus halodurans C-125]
          Length = 571

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  + +         IAITD 
Sbjct: 338 LHMHTTWS--DGAHSIEEMAEAARQRGYEYIAITDH 371


>gi|167569693|ref|ZP_02362567.1| hypothetical protein BoklC_07623 [Burkholderia oklahomensis C6786]
          Length = 202

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KG+G   ++ I++    + PF   +D  +RV  K L  + + +L  AG
Sbjct: 33  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRV--KGLGTKSVANLEAAG 83


>gi|167562513|ref|ZP_02355429.1| hypothetical protein BoklE_08124 [Burkholderia oklahomensis EO147]
          Length = 202

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KG+G   ++ I++    + PF   +D  +RV  K L  + + +L  AG
Sbjct: 33  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRV--KGLGTKSVANLEAAG 83


>gi|33602434|ref|NP_889994.1| hypothetical protein BB3461 [Bordetella bronchiseptica RB50]
 gi|33576873|emb|CAE33953.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 194

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           L  ++GVG  TAR I+E       F SLED   RV    L +  ++SL  AG
Sbjct: 115 LETVRGVGPRTARVIIEERQRGGRFLSLEDLSERVSGIGLKK--MQSLQAAG 164


>gi|322833323|ref|YP_004213350.1| PHP domain protein [Rahnella sp. Y9602]
 gi|321168524|gb|ADW74223.1| PHP domain protein [Rahnella sp. Y9602]
          Length = 307

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H++ S  +G L+   ++ +    +   +AITD ++       ++        +Q + 
Sbjct: 25  LHSHTTAS--DGYLTPEALVARAVEMRVGVLAITDHDSTEGLARAARAIADNQLPLQLVN 82

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           G ++   + +N ++   G    P  P++V
Sbjct: 83  GVEIS-TLWENHEIHIVGLGIDPGHPAMV 110


>gi|297570593|ref|YP_003691937.1| PHP domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296926508|gb|ADH87318.1| PHP domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 205

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 16/97 (16%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQP-- 69
           L VH+S+S     L L  IL   AA     + +TD N + +   +         GIQ   
Sbjct: 5   LHVHTSHSAC-STLELGQILAHAAARGLDGVCLTDHNTMAAGQQVR-------EGIQADG 56

Query: 70  ---IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
              I+G +     Q +  +    +   P + +  LL 
Sbjct: 57  LCVIVGME-YATPQGDFLLFGPFEQLRPGLAAEELLA 92


>gi|289425199|ref|ZP_06426976.1| PHP domain protein [Propionibacterium acnes SK187]
 gi|289428090|ref|ZP_06429793.1| PHP domain protein [Propionibacterium acnes J165]
 gi|295130861|ref|YP_003581524.1| PHP domain protein [Propionibacterium acnes SK137]
 gi|289154177|gb|EFD02865.1| PHP domain protein [Propionibacterium acnes SK187]
 gi|289158690|gb|EFD06891.1| PHP domain protein [Propionibacterium acnes J165]
 gi|291375958|gb|ADD99812.1| PHP domain protein [Propionibacterium acnes SK137]
          Length = 286

 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 2/82 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  ++ +G  S   ++ K A      +A+TD +      E        G++ + G 
Sbjct: 5  LHTHS--TISDGTDSPTRLMMKAAGSGLDVVALTDHDTFDGLEEAQAAGQRFGVRLLPGF 62

Query: 74 QLDIDMQDNLKMTNQGKTPFPT 95
          ++   +                
Sbjct: 63 EMTCHIGGRDVHLLGYGARPDD 84


>gi|291545075|emb|CBL18184.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Ruminococcus sp. 18P13]
          Length = 279

 Score = 49.0 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 2/86 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+   L +G+L + +I+ +        ++ITD + L S    +      G++ I G 
Sbjct: 5  LHCHTK--LSDGSLGIEDIIMQAKRTGIDFLSITDHDTLSSFSRANILGERYGVRIIQGV 62

Query: 74 QLDIDMQDNLKMTNQGKTPFPTVPSI 99
          +L    +      +           +
Sbjct: 63 ELSAWDKARNSKVHILCYAPKKPDRL 88


>gi|291617618|ref|YP_003520360.1| TrpH [Pantoea ananatis LMG 20103]
 gi|291152648|gb|ADD77232.1| TrpH [Pantoea ananatis LMG 20103]
          Length = 295

 Score = 49.0 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI--- 70
          L  H+  S  +G LS   ++++    +   +AITD + +    E  Q      + PI   
Sbjct: 12 LHSHTRAS--DGLLSPQALVERAVDMRVGVLAITDHDTVAGVTEAQQTVRDQQL-PISVL 68

Query: 71 IGCQLDIDMQDN 82
           G ++    +++
Sbjct: 69 AGVEISTLWENH 80


>gi|282853711|ref|ZP_06263048.1| PHP domain protein [Propionibacterium acnes J139]
 gi|282583164|gb|EFB88544.1| PHP domain protein [Propionibacterium acnes J139]
          Length = 286

 Score = 49.0 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 2/82 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  ++ +G  S   ++ K A      +A+TD +      E        G++ + G 
Sbjct: 5  LHTHS--TISDGTDSPTRLMMKAAGSGLDVVALTDHDTFDGLEEAQAAGQRFGVRLLPGF 62

Query: 74 QLDIDMQDNLKMTNQGKTPFPT 95
          ++   +                
Sbjct: 63 EMTCHIGGRDVHLLGYGARPDD 84


>gi|218549043|ref|YP_002382834.1| hypothetical protein EFER_1691 [Escherichia fergusonii ATCC
          35469]
 gi|218356584|emb|CAQ89207.1| conserved hypothetical protein [Escherichia fergusonii ATCC
          35469]
          Length = 293

 Score = 49.0 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|218961330|ref|YP_001741105.1| putative PHP domain protein [Candidatus Cloacamonas
          acidaminovorans]
 gi|167729987|emb|CAO80899.1| putative PHP domain protein [Candidatus Cloacamonas
          acidaminovorans]
          Length = 287

 Score = 49.0 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          V+L +H++ S  +G +S   ++ +        I+ITD + 
Sbjct: 12 VNLHLHTNVS--DGNISPKELIKRAQEIGLDLISITDHDT 49


>gi|50842808|ref|YP_056035.1| metal-dependent phosphoesterase [Propionibacterium acnes
          KPA171202]
 gi|50840410|gb|AAT83077.1| predicted metal-dependent phosphoesterase [Propionibacterium
          acnes KPA171202]
          Length = 286

 Score = 49.0 bits (115), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 2/82 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  ++ +G  S   ++ K A      +A+TD +      E        G++ + G 
Sbjct: 5  LHTHS--TISDGTDSPTRLMMKAAGSGLDVVALTDHDTFDGLEEAQAAGQRFGVRLLPGF 62

Query: 74 QLDIDMQDNLKMTNQGKTPFPT 95
          ++   +                
Sbjct: 63 EMTCHIGGRDVHLLGYGARPDD 84


>gi|331652303|ref|ZP_08353322.1| protein TrpH [Escherichia coli M718]
 gi|331050581|gb|EGI22639.1| protein TrpH [Escherichia coli M718]
          Length = 293

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|288935911|ref|YP_003439970.1| PHP domain protein [Klebsiella variicola At-22]
 gi|288890620|gb|ADC58938.1| PHP domain protein [Klebsiella variicola At-22]
          Length = 287

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 20/105 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---- 69
           L  H++ S  +G L+   ++ +    +   +AITD +++ +     ++   AG+      
Sbjct: 12  LHSHTTAS--DGRLTPQELVHRAHKMRVGTLAITDHDSVAAIPAAREEIARAGLPLTLVN 69

Query: 70  --------------IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
                         I+G  +DI       +  + K        ++
Sbjct: 70  GVEISTLWENHEIHIVGLNIDIAHPTMTALLEEQKARRQLRGQMI 114


>gi|320450381|ref|YP_004202477.1| DNA-dependent DNA polymerase subunit beta [Thermus scotoductus
           SA-01]
 gi|320150550|gb|ADW21928.1| DNA-dependent DNA polymerase beta chain [Thermus scotoductus SA-01]
          Length = 575

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           LQVHS+YS  +G  SL  +     +     + +TD 
Sbjct: 341 LQVHSTYS--DGQNSLEELWQAAKSLGYEYLGVTDH 374


>gi|82544280|ref|YP_408227.1| enzyme [Shigella boydii Sb227]
 gi|81245691|gb|ABB66399.1| putative enzymes [Shigella boydii Sb227]
          Length = 293

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|73542247|ref|YP_296767.1| hypothetical protein Reut_A2562 [Ralstonia eutropha JMP134]
 gi|72119660|gb|AAZ61923.1| conserved hypothetical protein [Ralstonia eutropha JMP134]
          Length = 112

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873
           +L ++KG+G  TA++I++      P+ S  D   RV 
Sbjct: 36  ALTSVKGIGPATAKNIIDERTKHGPYKSAADLAERVS 72


>gi|281178454|dbj|BAI54784.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 293

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|324113138|gb|EGC07113.1| PHP domain-containing protein [Escherichia fergusonii B253]
          Length = 293

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|239827969|ref|YP_002950593.1| hypothetical protein GWCH70_2633 [Geobacillus sp. WCH70]
 gi|239808262|gb|ACS25327.1| PHP domain protein [Geobacillus sp. WCH70]
          Length = 572

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +         +AITD 
Sbjct: 340 LHMHSTWS--DGACSIEEMAEACRKKGYRYMAITDH 373


>gi|323964603|gb|EGB60076.1| PHP domain-containing protein [Escherichia coli M863]
 gi|323977103|gb|EGB72190.1| PHP domain-containing protein [Escherichia coli TW10509]
          Length = 293

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|82776623|ref|YP_402972.1| putative enzymes [Shigella dysenteriae Sd197]
 gi|81240771|gb|ABB61481.1| putative enzymes [Shigella dysenteriae Sd197]
          Length = 293

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|331667651|ref|ZP_08368515.1| protein TrpH [Escherichia coli TA271]
 gi|331065236|gb|EGI37131.1| protein TrpH [Escherichia coli TA271]
          Length = 314

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 5  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|320187504|gb|EFW62190.1| hypothetical protein SGF_00294 [Shigella flexneri CDC 796-83]
          Length = 293

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|26247595|ref|NP_753635.1| protein trpH [Escherichia coli CFT073]
 gi|91210557|ref|YP_540543.1| putative enzyme [Escherichia coli UTI89]
 gi|215486561|ref|YP_002328992.1| hypothetical protein E2348C_1456 [Escherichia coli O127:H6 str.
          E2348/69]
 gi|218558251|ref|YP_002391164.1| hypothetical protein ECS88_1400 [Escherichia coli S88]
 gi|227886306|ref|ZP_04004111.1| PHP family metal-dependent phosphoesterase [Escherichia coli
          83972]
 gi|237705289|ref|ZP_04535770.1| trpH [Escherichia sp. 3_2_53FAA]
 gi|306813711|ref|ZP_07447892.1| hypothetical protein ECNC101_17402 [Escherichia coli NC101]
 gi|331657313|ref|ZP_08358275.1| protein TrpH [Escherichia coli TA206]
 gi|26107997|gb|AAN80197.1|AE016760_56 Protein trpH [Escherichia coli CFT073]
 gi|91072131|gb|ABE07012.1| putative enzyme [Escherichia coli UTI89]
 gi|215264633|emb|CAS09004.1| predicted protein [Escherichia coli O127:H6 str. E2348/69]
 gi|218365020|emb|CAR02723.1| conserved hypothetical protein [Escherichia coli S88]
 gi|222033070|emb|CAP75810.1| Protein trpH [Escherichia coli LF82]
 gi|226900046|gb|EEH86305.1| trpH [Escherichia sp. 3_2_53FAA]
 gi|227836510|gb|EEJ46976.1| PHP family metal-dependent phosphoesterase [Escherichia coli
          83972]
 gi|305852985|gb|EFM53430.1| hypothetical protein ECNC101_17402 [Escherichia coli NC101]
 gi|307553324|gb|ADN46099.1| putative phosphoesterase [Escherichia coli ABU 83972]
 gi|307627160|gb|ADN71464.1| hypothetical protein UM146_10455 [Escherichia coli UM146]
 gi|312945900|gb|ADR26727.1| hypothetical protein NRG857_06495 [Escherichia coli O83:H1 str.
          NRG 857C]
 gi|320195721|gb|EFW70346.1| hypothetical protein EcoM_02147 [Escherichia coli WV_060327]
 gi|323949131|gb|EGB45023.1| PHP domain-containing protein [Escherichia coli H252]
 gi|323953863|gb|EGB49664.1| PHP domain-containing protein [Escherichia coli H263]
 gi|331055561|gb|EGI27570.1| protein TrpH [Escherichia coli TA206]
          Length = 293

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|332091656|gb|EGI96736.1| PHP domain protein [Shigella boydii 5216-82]
          Length = 293

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|325497460|gb|EGC95319.1| putative phosphoesterase [Escherichia fergusonii ECD227]
          Length = 286

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 5  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|331646587|ref|ZP_08347690.1| protein TrpH [Escherichia coli M605]
 gi|330911129|gb|EGH39639.1| putative metal-dependent phosphoesterases (PHP family)
          [Escherichia coli AA86]
 gi|331045339|gb|EGI17466.1| protein TrpH [Escherichia coli M605]
          Length = 293

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|53802475|ref|YP_112891.1| phosphotransferase domain-containing protein [Methylococcus
          capsulatus str. Bath]
 gi|53756236|gb|AAU90527.1| PHP domain protein [Methylococcus capsulatus str. Bath]
          Length = 277

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L  HS+ S  +G LS   ++    A     +A+TD +++
Sbjct: 4  LHAHSTAS--DGTLSPTELVRAATAGGIRTLALTDHDSV 40


>gi|237745673|ref|ZP_04576153.1| metal-dependent phosphoesterase [Oxalobacter formigenes HOxBLS]
 gi|229377024|gb|EEO27115.1| metal-dependent phosphoesterase [Oxalobacter formigenes HOxBLS]
          Length = 277

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 2/95 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S  +G L+   ++ + +A+    +A+TD + +    E  + A  AGI+ + G 
Sbjct: 6   LHSHSRVS--DGVLTPAELVRRASANGVRMLALTDHDEVAGVTEAKKAAAEAGIELVSGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           ++ I                     I +L     G
Sbjct: 64  EISITWAGTSIHIVGLHVDENDPVLIDMLRRNRSG 98


>gi|320101258|ref|YP_004176850.1| PHP domain-containing protein [Desulfurococcus mucosus DSM 2162]
 gi|319753610|gb|ADV65368.1| PHP domain protein [Desulfurococcus mucosus DSM 2162]
          Length = 230

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA------GI 67
           L VHSSYS  +G      IL   A      IAITD +     LE  + +  A      G+
Sbjct: 6   LHVHSSYS--DGRAGPREILRYAALKGVGVIAITDHDTFRGGLEGYRLSREAAGTGSPGV 63

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
             + G +L      ++ +  +G+   P    +++
Sbjct: 64  LVVPGIELR-SSGGDILVYCEGEVDLPREIQLLI 96


>gi|256018488|ref|ZP_05432353.1| hypothetical protein ShiD9_06207 [Shigella sp. D9]
 gi|332101896|gb|EGJ05242.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 293

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|30062789|ref|NP_836960.1| putative enzyme [Shigella flexneri 2a str. 2457T]
 gi|194435043|ref|ZP_03067282.1| putative phosphoesterase [Shigella dysenteriae 1012]
 gi|30041037|gb|AAP16767.1| putative enzyme [Shigella flexneri 2a str. 2457T]
 gi|194416700|gb|EDX32830.1| putative phosphoesterase [Shigella dysenteriae 1012]
 gi|281600688|gb|ADA73672.1| putative metal-dependent phosphoesterases (PHP family) [Shigella
          flexneri 2002017]
 gi|320181706|gb|EFW56617.1| hypothetical protein SGB_01069 [Shigella boydii ATCC 9905]
 gi|332098263|gb|EGJ03236.1| PHP domain protein [Shigella dysenteriae 155-74]
          Length = 293

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|15801913|ref|NP_287933.1| putative enzyme [Escherichia coli O157:H7 EDL933]
 gi|15831092|ref|NP_309865.1| hypothetical protein ECs1838 [Escherichia coli O157:H7 str.
          Sakai]
 gi|168751154|ref|ZP_02776176.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4113]
 gi|168758350|ref|ZP_02783357.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4401]
 gi|168763587|ref|ZP_02788594.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4501]
 gi|168771264|ref|ZP_02796271.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4486]
 gi|168775074|ref|ZP_02800081.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4196]
 gi|168783768|ref|ZP_02808775.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4076]
 gi|168790065|ref|ZP_02815072.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC869]
 gi|168801612|ref|ZP_02826619.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC508]
 gi|195939199|ref|ZP_03084581.1| hypothetical protein EscherichcoliO157_22731 [Escherichia coli
          O157:H7 str. EC4024]
 gi|208811183|ref|ZP_03253016.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4206]
 gi|208816135|ref|ZP_03257314.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4045]
 gi|208820932|ref|ZP_03261252.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4042]
 gi|209398686|ref|YP_002270320.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4115]
 gi|217329083|ref|ZP_03445163.1| putative phosphoesterase [Escherichia coli O157:H7 str. TW14588]
 gi|254792854|ref|YP_003077691.1| hypothetical protein ECSP_1784 [Escherichia coli O157:H7 str.
          TW14359]
 gi|261224248|ref|ZP_05938529.1| hypothetical protein EscherichiacoliO157_06540 [Escherichia coli
          O157:H7 str. FRIK2000]
 gi|261257496|ref|ZP_05950029.1| hypothetical protein EscherichiacoliO157EcO_16987 [Escherichia
          coli O157:H7 str. FRIK966]
 gi|291282353|ref|YP_003499171.1| putative phosphoesterase [Escherichia coli O55:H7 str. CB9615]
 gi|12515531|gb|AAG56549.1|AE005380_8 putative enzymes [Escherichia coli O157:H7 str. EDL933]
 gi|13361303|dbj|BAB35261.1| putative enzymes [Escherichia coli O157:H7 str. Sakai]
 gi|187769236|gb|EDU33080.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4196]
 gi|188014757|gb|EDU52879.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4113]
 gi|188998944|gb|EDU67930.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4076]
 gi|189354808|gb|EDU73227.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4401]
 gi|189359945|gb|EDU78364.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4486]
 gi|189366264|gb|EDU84680.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4501]
 gi|189370412|gb|EDU88828.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC869]
 gi|189376266|gb|EDU94682.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC508]
 gi|208724689|gb|EDZ74397.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4206]
 gi|208732783|gb|EDZ81471.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4045]
 gi|208741055|gb|EDZ88737.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4042]
 gi|209160086|gb|ACI37519.1| putative phosphoesterase [Escherichia coli O157:H7 str. EC4115]
 gi|209772048|gb|ACI84336.1| putative enzyme [Escherichia coli]
 gi|209772050|gb|ACI84337.1| putative enzyme [Escherichia coli]
 gi|209772052|gb|ACI84338.1| putative enzyme [Escherichia coli]
 gi|209772054|gb|ACI84339.1| putative enzyme [Escherichia coli]
 gi|209772056|gb|ACI84340.1| putative enzyme [Escherichia coli]
 gi|217317522|gb|EEC25950.1| putative phosphoesterase [Escherichia coli O157:H7 str. TW14588]
 gi|254592254|gb|ACT71615.1| conserved protein [Escherichia coli O157:H7 str. TW14359]
 gi|290762226|gb|ADD56187.1| Putative phosphoesterase [Escherichia coli O55:H7 str. CB9615]
 gi|320189983|gb|EFW64635.1| hypothetical protein ECoD_03466 [Escherichia coli O157:H7 str.
          EC1212]
 gi|320637160|gb|EFX06986.1| putative phosphoesterase [Escherichia coli O157:H7 str. G5101]
 gi|320642526|gb|EFX11774.1| putative phosphoesterase [Escherichia coli O157:H- str. 493-89]
 gi|320647879|gb|EFX16587.1| putative phosphoesterase [Escherichia coli O157:H- str. H 2687]
 gi|320653481|gb|EFX21586.1| putative phosphoesterase [Escherichia coli O55:H7 str. 3256-97 TW
          07815]
 gi|320659181|gb|EFX26770.1| putative phosphoesterase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320663974|gb|EFX31161.1| putative phosphoesterase [Escherichia coli O157:H7 str. LSU-61]
 gi|326341074|gb|EGD64867.1| hypothetical protein ECF_03624 [Escherichia coli O157:H7 str.
          1125]
 gi|326343315|gb|EGD67082.1| putative phosphoesterase [Escherichia coli O157:H7 str. 1044]
          Length = 293

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|194437044|ref|ZP_03069143.1| putative phosphoesterase [Escherichia coli 101-1]
 gi|253773737|ref|YP_003036568.1| PHP domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161345|ref|YP_003044453.1| hypothetical protein ECB_01240 [Escherichia coli B str. REL606]
 gi|194424027|gb|EDX40015.1| putative phosphoesterase [Escherichia coli 101-1]
 gi|242377043|emb|CAQ31767.1| conserved protein [Escherichia coli BL21(DE3)]
 gi|253324781|gb|ACT29383.1| PHP domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973246|gb|ACT38917.1| hypothetical protein ECB_01240 [Escherichia coli B str. REL606]
 gi|253977460|gb|ACT43130.1| hypothetical protein ECD_01240 [Escherichia coli BL21(DE3)]
 gi|284921147|emb|CBG34213.1| putative phosphoesterase [Escherichia coli 042]
 gi|323962566|gb|EGB58146.1| PHP domain-containing protein [Escherichia coli H489]
 gi|323973494|gb|EGB68680.1| PHP domain-containing protein [Escherichia coli TA007]
          Length = 293

 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|291563199|emb|CBL42015.1| hypothetical protein CK3_24630 [butyrate-producing bacterium SS3/4]
          Length = 67

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 21/39 (53%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
           S+ +I G+G   A  I EA+ D  F S EDF +R    K
Sbjct: 3   SINSIDGLGEKAADSIEEAAKDGKFLSKEDFRNRTKVSK 41


>gi|157154837|ref|YP_001462563.1| putative phosphoesterase [Escherichia coli E24377A]
 gi|157076867|gb|ABV16575.1| putative phosphoesterase [Escherichia coli E24377A]
          Length = 286

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 5  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|117623526|ref|YP_852439.1| hypothetical protein APECO1_426 [Escherichia coli APEC O1]
 gi|312966806|ref|ZP_07781024.1| PHP domain protein [Escherichia coli 2362-75]
 gi|115512650|gb|ABJ00725.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|294493888|gb|ADE92644.1| putative phosphoesterase [Escherichia coli IHE3034]
 gi|312288270|gb|EFR16172.1| PHP domain protein [Escherichia coli 2362-75]
          Length = 286

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 5  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|76801013|ref|YP_326021.1| hypothetical protein NP0722A [Natronomonas pharaonis DSM 2160]
 gi|76556878|emb|CAI48452.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160]
          Length = 256

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 14/93 (15%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AGIQ 68
           L VH+  S  +G+L+L  I +   A     +A+TD +          +         GI 
Sbjct: 6   LHVHTQNS--DGSLTLGAIPEAAKAAGLSTVAVTDHD------RLHPEMRTPVAELDGIT 57

Query: 69  PIIGCQLDIDMQD-NLKMTNQGKTPFPTVPSIV 100
            + G +L ++  D  + +   G      + ++V
Sbjct: 58  VVHGIELRVEADDQRVDLLGYGVRRTEALSALV 90


>gi|187733133|ref|YP_001880096.1| putative phosphoesterase [Shigella boydii CDC 3083-94]
 gi|187430125|gb|ACD09399.1| putative phosphoesterase [Shigella boydii CDC 3083-94]
          Length = 286

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 5  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|16129227|ref|NP_415782.1| conserved protein [Escherichia coli str. K-12 substr. MG1655]
 gi|89108112|ref|AP_001892.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110]
 gi|170020370|ref|YP_001725324.1| phosphotransferase domain-containing protein [Escherichia coli
          ATCC 8739]
 gi|170080943|ref|YP_001730263.1| hypothetical protein ECDH10B_1381 [Escherichia coli str. K-12
          substr. DH10B]
 gi|191166661|ref|ZP_03028489.1| putative phosphoesterase [Escherichia coli B7A]
 gi|193062671|ref|ZP_03043765.1| putative phosphoesterase [Escherichia coli E22]
 gi|193069985|ref|ZP_03050933.1| putative phosphoesterase [Escherichia coli E110019]
 gi|194426096|ref|ZP_03058652.1| putative phosphoesterase [Escherichia coli B171]
 gi|218694837|ref|YP_002402504.1| hypothetical protein EC55989_1423 [Escherichia coli 55989]
 gi|238900499|ref|YP_002926295.1| hypothetical protein BWG_1095 [Escherichia coli BW2952]
 gi|256023026|ref|ZP_05436891.1| hypothetical protein E4_06614 [Escherichia sp. 4_1_40B]
 gi|260843614|ref|YP_003221392.1| hypothetical protein ECO103_1428 [Escherichia coli O103:H2 str.
          12009]
 gi|260854964|ref|YP_003228855.1| hypothetical protein ECO26_1831 [Escherichia coli O26:H11 str.
          11368]
 gi|260867715|ref|YP_003234117.1| hypothetical protein ECO111_1646 [Escherichia coli O111:H- str.
          11128]
 gi|293433627|ref|ZP_06662055.1| trpH [Escherichia coli B088]
 gi|307137903|ref|ZP_07497259.1| hypothetical protein EcolH7_07192 [Escherichia coli H736]
 gi|307309980|ref|ZP_07589630.1| PHP domain protein [Escherichia coli W]
 gi|331641824|ref|ZP_08342959.1| protein TrpH [Escherichia coli H736]
 gi|331677044|ref|ZP_08377740.1| protein TrpH [Escherichia coli H591]
 gi|3025078|sp|P77766|TRPH_ECOLI RecName: Full=Protein trpH
 gi|1742058|dbj|BAA14800.1| conserved hypothetical protein [Escherichia coli str. K12 substr.
          W3110]
 gi|1787520|gb|AAC74348.1| conserved protein [Escherichia coli str. K-12 substr. MG1655]
 gi|169755298|gb|ACA77997.1| PHP domain protein [Escherichia coli ATCC 8739]
 gi|169888778|gb|ACB02485.1| conserved protein [Escherichia coli str. K-12 substr. DH10B]
 gi|190903310|gb|EDV63031.1| putative phosphoesterase [Escherichia coli B7A]
 gi|192931793|gb|EDV84393.1| putative phosphoesterase [Escherichia coli E22]
 gi|192956738|gb|EDV87193.1| putative phosphoesterase [Escherichia coli E110019]
 gi|194416151|gb|EDX32417.1| putative phosphoesterase [Escherichia coli B171]
 gi|218351569|emb|CAU97281.1| conserved hypothetical protein [Escherichia coli 55989]
 gi|238860470|gb|ACR62468.1| conserved protein [Escherichia coli BW2952]
 gi|257753613|dbj|BAI25115.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368]
 gi|257758761|dbj|BAI30258.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009]
 gi|257764071|dbj|BAI35566.1| conserved predicted protein [Escherichia coli O111:H- str. 11128]
 gi|260449604|gb|ACX40026.1| PHP domain protein [Escherichia coli DH1]
 gi|291324446|gb|EFE63868.1| trpH [Escherichia coli B088]
 gi|306909698|gb|EFN40192.1| PHP domain protein [Escherichia coli W]
 gi|309701564|emb|CBJ00871.1| putative phosphoesterase [Escherichia coli ETEC H10407]
 gi|315060517|gb|ADT74844.1| conserved protein [Escherichia coli W]
 gi|315135902|dbj|BAJ43061.1| hypothetical protein ECDH1ME8569_1205 [Escherichia coli DH1]
 gi|320199301|gb|EFW73892.1| hypothetical protein ECoL_03400 [Escherichia coli EC4100B]
 gi|323378920|gb|ADX51188.1| PHP domain protein [Escherichia coli KO11]
 gi|323937587|gb|EGB33855.1| PHP domain-containing protein [Escherichia coli E1520]
 gi|323942380|gb|EGB38550.1| PHP domain-containing protein [Escherichia coli E482]
 gi|323947453|gb|EGB43457.1| PHP domain-containing protein [Escherichia coli H120]
 gi|324117541|gb|EGC11447.1| PHP domain-containing protein [Escherichia coli E1167]
 gi|331038622|gb|EGI10842.1| protein TrpH [Escherichia coli H736]
 gi|331075733|gb|EGI47031.1| protein TrpH [Escherichia coli H591]
          Length = 293

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|296102092|ref|YP_003612238.1| phosphotransferase domain-containing protein [Enterobacter
          cloacae subsp. cloacae ATCC 13047]
 gi|295056551|gb|ADF61289.1| phosphotransferase domain-containing protein [Enterobacter
          cloacae subsp. cloacae ATCC 13047]
          Length = 293

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--ACA-AGIQPI 70
          L  H+  S  +G L+   ++ +    +   +AITD +    A+  ++   A +   ++ +
Sbjct: 12 LHSHTQAS--DGLLTPEALVHRAVEMRVGTLAITDHDTT-DAIPAARAEIARSGLALKLV 68

Query: 71 IGCQLDIDMQDN 82
           G ++    +++
Sbjct: 69 PGVEISTVWENH 80


>gi|293414598|ref|ZP_06657247.1| yciV enzyme [Escherichia coli B185]
 gi|291434656|gb|EFF07629.1| yciV enzyme [Escherichia coli B185]
          Length = 292

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|332178821|gb|AEE14510.1| Soluble ligand binding domain protein [Thermodesulfobium narugense
           DSM 14796]
          Length = 193

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
           L ++ G+G   A  I++      F  +EDF  R++        L+ L+
Sbjct: 144 LNSLPGIGKVIAERIIDERNRAKFKDIEDFKQRLNLSSAKIDRLKGLI 191


>gi|309789074|ref|ZP_07683669.1| PHP domain protein [Shigella dysenteriae 1617]
 gi|308923345|gb|EFP68857.1| PHP domain protein [Shigella dysenteriae 1617]
          Length = 286

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 5  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|169835539|ref|ZP_02868727.1| DNA polymerase III subunit alpha [candidate division TM7
           single-cell isolate TM7a]
          Length = 62

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 8/55 (14%)

Query: 175 KKLFGDRLYVNLQRHRGYD--------RYRESQVVQLAYTHELPLVATNNSLFLS 221
           ++ FGDR Y+ LQ H   D              + +LA    +  V +++  +LS
Sbjct: 8   QECFGDRYYLELQDHGHPDCPSRWDVQTRINEHIEKLADELGIECVISSDGHYLS 62


>gi|170759450|ref|YP_001786008.1| phosphotransferase domain-containing protein [Clostridium
          botulinum A3 str. Loch Maree]
 gi|169406439|gb|ACA54850.1| PHP domain protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 272

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          +    VH+++S  +G   + N+LD        AIAITD + +
Sbjct: 3  YADFHVHTNHS--DGICEIANVLDMAKEKGIKAIAITDHDTV 42


>gi|167947393|ref|ZP_02534467.1| DNA polymerase III subunit alpha [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 92

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/74 (45%), Positives = 50/74 (67%)

Query: 514 ISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDF 573
           +++KLEGL R+A  HA G+VI    L+   P+Y +      VTQF+   +E+AGL+KFDF
Sbjct: 3   MARKLEGLARNAGKHAGGVVIAPGLLTDFAPLYCEEGGGNLVTQFDKNDVEQAGLVKFDF 62

Query: 574 LGLKTLTLLQKSLD 587
           LGL+TLT++  +L 
Sbjct: 63  LGLRTLTIIDWALQ 76


>gi|323185575|gb|EFZ70936.1| PHP domain protein [Escherichia coli 1357]
          Length = 286

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 5  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|209918506|ref|YP_002292590.1| hypothetical protein ECSE_1315 [Escherichia coli SE11]
 gi|209911765|dbj|BAG76839.1| conserved hypothetical protein [Escherichia coli SE11]
          Length = 293

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|289191688|ref|YP_003457629.1| PHP domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938138|gb|ADC68893.1| PHP domain protein [Methanocaldococcus sp. FS406-22]
          Length = 289

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 15/96 (15%)

Query: 14 LQVHSSYSLLEGALS---------LNN---ILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          L +H+ YS   G            +     IL          IAITD N +   +E  + 
Sbjct: 5  LHIHTKYS---GIGKFWKLKFPDSVEEPRNILKVAKKRGIDIIAITDHNTIKGGIETKKL 61

Query: 62 ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
              G++ IIG ++     + + +      P    P
Sbjct: 62 EKEFGVEVIIGSEIMTTEGEIIGLFLNEDIPKGLTP 97


>gi|225026473|ref|ZP_03715665.1| hypothetical protein EUBHAL_00722 [Eubacterium hallii DSM 3353]
 gi|224956212|gb|EEG37421.1| hypothetical protein EUBHAL_00722 [Eubacterium hallii DSM 3353]
          Length = 289

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 14/81 (17%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPA-------IAITDTNNLFSALEFSQKA 62
          +++ L +HS+ S  +G  S   I++        A       IA+TD + +    EF + A
Sbjct: 3  TYIDLHIHSTAS--DGTFSPTEIINDALKL---AGDKNPVVIALTDHDTVAGTEEFQKAA 57

Query: 63 CAAG--IQPIIGCQLDIDMQD 81
                +  I G ++  D   
Sbjct: 58 AKHKERLTAISGVEISTDYHG 78


>gi|110805269|ref|YP_688789.1| hypothetical protein SFV_1279 [Shigella flexneri 5 str. 8401]
 gi|110614817|gb|ABF03484.1| putative enzymes [Shigella flexneri 5 str. 8401]
          Length = 286

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 5  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|257463093|ref|ZP_05627494.1| phosphotransferase domain-containing protein [Fusobacterium sp.
          D12]
          Length = 272

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+ S  +G+ S   ++      +  AIA+TD + +   LE   +A   G++ ++G 
Sbjct: 5  LHIHSTAS--DGSFSPKQVVQLAMMKKMRAIALTDHDTIDGLLEAKCEADKWGLEFVMGI 62

Query: 74 QLD 76
          +  
Sbjct: 63 EFS 65


>gi|327253956|gb|EGE65585.1| PHP domain protein [Escherichia coli STEC_7v]
          Length = 307

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 26 LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 83

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 84 GVEISTVWENH 94


>gi|238786120|ref|ZP_04630075.1| hypothetical protein yberc0001_36550 [Yersinia bercovieri ATCC
          43970]
 gi|238712972|gb|EEQ05029.1| hypothetical protein yberc0001_36550 [Yersinia bercovieri ATCC
          43970]
          Length = 309

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-ACAA-GIQPII 71
          L  H++ S  +G+L+   ++ + A  +   +AITD +      E +   A     +Q I 
Sbjct: 22 LHSHTTAS--DGSLTPAALVIRAAQMRVSVLAITDHDTTAGLAEAAATIAQEKLALQLIS 79

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 80 GVEISTLWENH 90


>gi|317406343|gb|EFV86574.1| phosphoesterase [Achromobacter xylosoxidans C54]
          Length = 277

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  ++ +GAL+  ++  +  A+     A+TD + +    E +  A   G++   G 
Sbjct: 6  LHCHS--TVSDGALAPRDVAQRAHANGVDVWALTDHDEVGGLAEAAAMAGELGMRFATGV 63

Query: 74 QLDIDM 79
          ++ +  
Sbjct: 64 EISVTW 69


>gi|317060692|ref|ZP_07925177.1| metal-dependent phosphoesterase [Fusobacterium sp. D12]
 gi|313686368|gb|EFS23203.1| metal-dependent phosphoesterase [Fusobacterium sp. D12]
          Length = 280

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+ S  +G+ S   ++      +  AIA+TD + +   LE   +A   G++ ++G 
Sbjct: 13 LHIHSTAS--DGSFSPKQVVQLAMMKKMRAIALTDHDTIDGLLEAKCEADKWGLEFVMGI 70

Query: 74 QLD 76
          +  
Sbjct: 71 EFS 73


>gi|238899276|ref|YP_002924959.1| hypothetical protein HDEF_2270 [Candidatus Hamiltonella defensa
          5AT (Acyrthosiphon pisum)]
 gi|229467037|gb|ACQ68811.1| conserved hypothetical protein, PHP domain protein [Candidatus
          Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 293

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H+  S  +G L+   ++ +        +AITD +     +   +        IQ I 
Sbjct: 12 LHSHT--SASDGLLTPMQLVHRAVTMGVHILAITDHDTTSGLMAAKKTIQEQQLPIQLID 69

Query: 72 GCQLD 76
          G ++ 
Sbjct: 70 GVEIS 74


>gi|168185378|ref|ZP_02620013.1| PHP domain protein [Clostridium botulinum C str. Eklund]
 gi|169296252|gb|EDS78385.1| PHP domain protein [Clostridium botulinum C str. Eklund]
          Length = 243

 Score = 48.6 bits (114), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPIIG 72
           VH+ YS  +  +  N +   +  +    IAITD N +  A++F +     G  I  IIG
Sbjct: 8  HVHTEYSP-DSDIKFNKLYQVLKKNDIYGIAITDHNTIEGAVKFKE---KYGEDIHVIIG 63

Query: 73 CQL 75
           ++
Sbjct: 64 EEI 66


>gi|282865438|ref|ZP_06274490.1| PHP domain protein [Streptomyces sp. ACTE]
 gi|282559911|gb|EFB65461.1| PHP domain protein [Streptomyces sp. ACTE]
          Length = 288

 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++ + AA     +A+TD + +    E +  A   G+  + G 
Sbjct: 5  LHTHSTAS--DGTDTPAELVARAAAAGLDVVALTDHDTVGGHAEAA-AALPEGLTLVPGA 61

Query: 74 QLD 76
          +L 
Sbjct: 62 ELS 64


>gi|157160771|ref|YP_001458089.1| putative phosphoesterase [Escherichia coli HS]
 gi|188494841|ref|ZP_03002111.1| PHP domain protein [Escherichia coli 53638]
 gi|312971454|ref|ZP_07785629.1| PHP domain protein [Escherichia coli 1827-70]
 gi|157066451|gb|ABV05706.1| putative phosphoesterase [Escherichia coli HS]
 gi|188490040|gb|EDU65143.1| PHP domain protein [Escherichia coli 53638]
 gi|310336051|gb|EFQ01251.1| PHP domain protein [Escherichia coli 1827-70]
 gi|315619344|gb|EFU99888.1| PHP domain protein [Escherichia coli 3431]
 gi|323153302|gb|EFZ39560.1| PHP domain protein [Escherichia coli EPECa14]
 gi|323162373|gb|EFZ48228.1| PHP domain protein [Escherichia coli E128010]
 gi|323172378|gb|EFZ58015.1| PHP domain protein [Escherichia coli LT-68]
 gi|323179782|gb|EFZ65343.1| PHP domain protein [Escherichia coli 1180]
          Length = 286

 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 5  LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 62

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 63 GVEISTVWENH 73


>gi|218699973|ref|YP_002407602.1| hypothetical protein ECIAI39_1602 [Escherichia coli IAI39]
 gi|218369959|emb|CAR17733.1| conserved hypothetical protein [Escherichia coli IAI39]
          Length = 293

 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|331086697|ref|ZP_08335774.1| hypothetical protein HMPREF0987_02077 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330409863|gb|EGG89298.1| hypothetical protein HMPREF0987_02077 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 219

 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 10/70 (14%)

Query: 11 FVHLQVH--SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS--QKACAAG 66
          F+ L +H  + YS  +  L L  I++        A+ ITD +++   L+    + +   G
Sbjct: 2  FIDLHMHECT-YS-KDSHLKLEEIVELAKKRGLGAVCITDHDDM-G-LKAYAVEYSEKTG 57

Query: 67 IQPII-GCQL 75
            PI  G + 
Sbjct: 58 F-PIFVGIEF 66


>gi|239816991|ref|YP_002945901.1| PHP domain protein [Variovorax paradoxus S110]
 gi|239803568|gb|ACS20635.1| PHP domain protein [Variovorax paradoxus S110]
          Length = 285

 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS  S  +G L+   +  + AA+     A+TD +
Sbjct: 9  LHCHSVVS--DGTLTPEELAARAAANGVELWALTDHD 43


>gi|284166689|ref|YP_003404968.1| histidinol phosphate phosphatase HisJ family [Haloterrigena
          turkmenica DSM 5511]
 gi|284016344|gb|ADB62295.1| histidinol phosphate phosphatase HisJ family [Haloterrigena
          turkmenica DSM 5511]
          Length = 268

 Score = 48.2 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 9/40 (22%)

Query: 15 QVHSSYS---LLEGALSLNNILDKIAADQQPAIAITDTNN 51
            H++YS    L G      ++          I +TD   
Sbjct: 5  HAHTNYSDGKFLRG------MVQAAEEAGLEGIGLTDHCT 38


>gi|310826757|ref|YP_003959114.1| putative PHP domain protein [Eubacterium limosum KIST612]
 gi|308738491|gb|ADO36151.1| putative PHP domain protein [Eubacterium limosum KIST612]
          Length = 243

 Score = 48.2 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 5/44 (11%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN-N--LFSA 55
            H++YS   G  ++  ++++  A    AI I+D   +  +F  
Sbjct: 8  HTHTTYS--HGKNTIEEMVEQARALGLRAIVISDHGRSHPMFGV 49


>gi|237731720|ref|ZP_04562201.1| trpH [Citrobacter sp. 30_2]
 gi|226907259|gb|EEH93177.1| trpH [Citrobacter sp. 30_2]
          Length = 292

 Score = 48.2 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +         ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGRLTPEALVHRAVEMRVGTLAITDHDTTAGIAAAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|261367114|ref|ZP_05979997.1| putative PHP domain protein [Subdoligranulum variabile DSM 15176]
 gi|282571237|gb|EFB76772.1| putative PHP domain protein [Subdoligranulum variabile DSM 15176]
          Length = 287

 Score = 48.2 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 9/74 (12%), Positives = 25/74 (33%), Gaps = 2/74 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H+++S  +G+     +           +AI+D +++             G+  I   
Sbjct: 5  LHTHTTFS--DGSTPAEKLPFLAKCAGMTHLAISDHDSMRGIRYAYAHPTQEGVHLIPAI 62

Query: 74 QLDIDMQDNLKMTN 87
          ++     +     +
Sbjct: 63 EMTAYDYERAHRVH 76


>gi|171059263|ref|YP_001791612.1| phosphotransferase domain-containing protein [Leptothrix
          cholodnii SP-6]
 gi|170776708|gb|ACB34847.1| PHP domain protein [Leptothrix cholodnii SP-6]
          Length = 298

 Score = 48.2 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS+ S  +G LS  ++  + A +     A+TD +
Sbjct: 18 LHCHSTVS--DGTLSPEDLAARAANNGVELWALTDHD 52


>gi|317497917|ref|ZP_07956226.1| hypothetical protein HMPREF0996_01207 [Lachnospiraceae bacterium
          5_1_63FAA]
 gi|316894796|gb|EFV16969.1| hypothetical protein HMPREF0996_01207 [Lachnospiraceae bacterium
          5_1_63FAA]
          Length = 74

 Score = 48.2 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  H+   L +GA+ ++ I+          IAI+D  +  S  E        G+ 
Sbjct: 5  LHCHTV--LSDGAMRVDQIIPYAKRIGLDYIAISDHESTHSIPEAVILGKELGVH 57


>gi|307354311|ref|YP_003895362.1| PHP domain-containing protein [Methanoplanus petrolearius DSM
           11571]
 gi|307157544|gb|ADN36924.1| PHP domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 215

 Score = 48.2 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 73/231 (31%), Gaps = 49/231 (21%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT---NNLFSALEFSQ----KACAAG 66
           L  H+ +S  +G L    ++ + A      I ITD    +N+   ++ ++     A   G
Sbjct: 4   LHTHTIHS--DGELLPTELIRRAAVLGYDIIGITDHADRSNISQIIKMTESIRSSAEEYG 61

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           I+ + G ++                P   +P +  L                    ++G 
Sbjct: 62  IRLVTGVEIT-------------HVPPREIPELARLAK------------------EEGA 90

Query: 127 QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
           + V +    + E   +G       S   +D           +  L     +F     + +
Sbjct: 91  EIVIVHGETVVEPVMKG-TNSAACSCEYVDILAHPGLISEQDAELAKASGVF-----LEI 144

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHS 237
               G++R     V ++A      +V  +++      D    +   AVA  
Sbjct: 145 TSRGGHNR-TNGHVYRIAERTGCRMVVDSDT--HDPGDLMTEEARKAVALG 192


>gi|161503165|ref|YP_001570277.1| hypothetical protein SARI_01233 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864512|gb|ABX21135.1| hypothetical protein SARI_01233 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
          Length = 293

 Score = 48.2 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   + ITD +   +     ++   +G  +  I 
Sbjct: 16 LHSHTTAS--DGLLTPETLVHRAVEMRVGTLGITDHDTTAAIPAAREEISRSGLALNLIP 73

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 74 GVEISTVWENH 84


>gi|330445590|ref|ZP_08309242.1| PHP domain protein [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
 gi|328489781|dbj|GAA03739.1| PHP domain protein [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
          Length = 296

 Score = 48.2 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD + +    E           I  I 
Sbjct: 5  LHSHTTAS--DGRLTPQELVRRAVDMRVDILAITDHDTVAGLHEAHSVIEQEDLPITLIN 62

Query: 72 GCQLD 76
          G ++ 
Sbjct: 63 GIEIS 67


>gi|242239362|ref|YP_002987543.1| PHP domain protein [Dickeya dadantii Ech703]
 gi|242131419|gb|ACS85721.1| PHP domain protein [Dickeya dadantii Ech703]
          Length = 297

 Score = 48.2 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD + +    E  +    +   ++ I 
Sbjct: 20 LHSHTTAS--DGVLTPAELVRRAVDMRVGVLAITDHDTIAGLQEAEETIRQSSLPLRLIS 77

Query: 72 GCQLDIDMQDN 82
          G ++    + +
Sbjct: 78 GVEISTLWEHH 88


>gi|134046445|ref|YP_001097930.1| phosphotransferase domain-containing protein [Methanococcus
          maripaludis C5]
 gi|132664070|gb|ABO35716.1| PHP C-terminal domain protein [Methanococcus maripaludis C5]
          Length = 299

 Score = 48.2 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 15/91 (16%)

Query: 15 QVHSSYSLLEGALS---------LNN---ILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
           +H+ YS   G +          +     ++    A+    IA+TD N +  ALE  +  
Sbjct: 11 HIHTKYS---GMMKYMGLKFPDSVEEPLKVMKCAKANGMDIIAVTDHNTIKGALETKKYE 67

Query: 63 CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPF 93
             GI+ ++G ++     + L +      P 
Sbjct: 68 KEFGIEVVVGSEIMSKDGEILGLFLNDDIPK 98


>gi|326566173|gb|EGE16327.1| PHP-like protein [Moraxella catarrhalis BC1]
          Length = 293

 Score = 48.2 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 17  HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
           HS+ S  +G  +   ++ K+A       A+TD + +    E  Q A   G++ I G +  
Sbjct: 2   HSTCS--DGTNTPTELIKKVALAGIQMAALTDHDTIKGLDEAKQTAKMVGVELIRGVE-- 57

Query: 77  IDMQDNLKMTNQGKTPFPTVPSIVLL 102
           +     L            +  +V L
Sbjct: 58  VSCTHTLSGGYGKHQEIDKIIHVVAL 83


>gi|186476190|ref|YP_001857660.1| phosphotransferase domain-containing protein [Burkholderia
          phymatum STM815]
 gi|184192649|gb|ACC70614.1| PHP domain protein [Burkholderia phymatum STM815]
          Length = 277

 Score = 48.2 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  ++ +GA +   +  +  A      A+TD + +   +E  + A A G+Q + G 
Sbjct: 6  LHCHS--TVSDGAFAPAEVARRAHAGGVTLWALTDHDEIGGQVEAREAAEALGMQYLSGV 63

Query: 74 QLDIDMQDN 82
          ++ +     
Sbjct: 64 EISVTWASR 72


>gi|289673969|ref|ZP_06494859.1| error-prone DNA polymerase [Pseudomonas syringae pv. syringae FF5]
          Length = 85

 Score = 48.2 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 41/80 (51%)

Query: 732 FISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAAS 791
             +G  KNG     A  IFE +  F  YGF +SHAA++A+++Y + W+K H P  F  A 
Sbjct: 1   MRTGMLKNGYEADFADRIFEQIKGFGSYGFPESHAASFALLTYASCWLKCHEPAAFTCAL 60

Query: 792 MTLEMDNVEKIKKFCQDARQ 811
           +           +  QDAR+
Sbjct: 61  INSWPMGFYSPDQLLQDARR 80


>gi|170693726|ref|ZP_02884884.1| helix-hairpin-helix motif [Burkholderia graminis C4D1M]
 gi|170141508|gb|EDT09678.1| helix-hairpin-helix motif [Burkholderia graminis C4D1M]
          Length = 121

 Score = 48.2 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  +KG+G   A+ I+E   A  PF    D   RV  K +    +E L
Sbjct: 31  ALRGVKGIGPAKAKAILEERAAHGPFKDPADLGKRV--KGMGGHTVERL 77


>gi|187926586|ref|YP_001892931.1| PHP domain protein [Ralstonia pickettii 12J]
 gi|241666097|ref|YP_002984456.1| PHP domain protein [Ralstonia pickettii 12D]
 gi|187728340|gb|ACD29504.1| PHP domain protein [Ralstonia pickettii 12J]
 gi|240868124|gb|ACS65784.1| PHP domain protein [Ralstonia pickettii 12D]
          Length = 582

 Score = 48.2 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VH+  S  +G  SL  +  +        +A+TD 
Sbjct: 349 LHVHT--SASDGTASLEAMAAQARMLGYQYLAVTDH 382


>gi|88602519|ref|YP_502697.1| PHP-like protein [Methanospirillum hungatei JF-1]
 gi|88187981|gb|ABD40978.1| PHP-like protein [Methanospirillum hungatei JF-1]
          Length = 306

 Score = 48.2 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +H+++S  +G   ++++L          +AITD N +  +L+      ++ +  I G +
Sbjct: 31  HLHTNHS--DGMTKISDLLTYAKKRNI-GVAITDHNEISGSLDALS--HSSDVLVIPGIE 85

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSI 99
           L+ +   +L               I
Sbjct: 86  LETEEGPHLLFYFYSSGDMEDFFKI 110


>gi|261418292|ref|YP_003251974.1| hypothetical protein GYMC61_0823 [Geobacillus sp. Y412MC61]
 gi|319767748|ref|YP_004133249.1| PHP domain protein [Geobacillus sp. Y412MC52]
 gi|261374749|gb|ACX77492.1| PHP domain protein [Geobacillus sp. Y412MC61]
 gi|317112614|gb|ADU95106.1| PHP domain protein [Geobacillus sp. Y412MC52]
          Length = 574

 Score = 48.2 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA SL  + +         IAITD 
Sbjct: 340 LHMHSAWS--DGACSLAELAEACRRRGYRYIAITDH 373


>gi|294496067|ref|YP_003542560.1| PHP domain protein [Methanohalophilus mahii DSM 5219]
 gi|292667066|gb|ADE36915.1| PHP domain protein [Methanohalophilus mahii DSM 5219]
          Length = 221

 Score = 48.2 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L VHS +S  +     ++IL+    +    +AI D +++
Sbjct: 5  LHVHSCFSD-DSNSQFDSILEWAKKNGIDGVAICDHDSV 42


>gi|221201268|ref|ZP_03574308.1| DNA-binding protein [Burkholderia multivorans CGD2M]
 gi|221206278|ref|ZP_03579291.1| DNA-binding protein [Burkholderia multivorans CGD2]
 gi|221213557|ref|ZP_03586531.1| DNA-binding protein [Burkholderia multivorans CGD1]
 gi|221166346|gb|EED98818.1| DNA-binding protein [Burkholderia multivorans CGD1]
 gi|221173587|gb|EEE06021.1| DNA-binding protein [Burkholderia multivorans CGD2]
 gi|221179118|gb|EEE11525.1| DNA-binding protein [Burkholderia multivorans CGD2M]
          Length = 118

 Score = 48.2 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L  IKG+G   A+ I++   A  PF    D  SRV  K +    +E L   G
Sbjct: 31  ALMGIKGIGPARAKAILDERGARGPFKDAADLASRV--KGMGGHTVERLQKEG 81


>gi|161525420|ref|YP_001580432.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Burkholderia multivorans ATCC 17616]
 gi|189349843|ref|YP_001945471.1| competence protein [Burkholderia multivorans ATCC 17616]
 gi|160342849|gb|ABX15935.1| helix-hairpin-helix motif [Burkholderia multivorans ATCC 17616]
 gi|189333865|dbj|BAG42935.1| competence protein [Burkholderia multivorans ATCC 17616]
          Length = 125

 Score = 48.2 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L  IKG+G   A+ I++   A  PF    D  SRV  K +    +E L   G
Sbjct: 31  ALMGIKGIGPARAKAILDERSARGPFKDAADLASRV--KGMGGHTVERLQKEG 81


>gi|209519351|ref|ZP_03268150.1| conserved hypothetical protein [Burkholderia sp. H160]
 gi|209500235|gb|EEA00292.1| conserved hypothetical protein [Burkholderia sp. H160]
          Length = 124

 Score = 48.2 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  IKG+G   A+ I++   A  PF    D   RV  K +    +E L
Sbjct: 32  LRGIKGIGAARAKAILDERTAHGPFKDAADLGKRV--KGMGGHTVERL 77


>gi|168183666|ref|ZP_02618330.1| PHP domain protein [Clostridium botulinum Bf]
 gi|237797045|ref|YP_002864597.1| PHP domain-containing protein [Clostridium botulinum Ba4 str.
          657]
 gi|182673262|gb|EDT85223.1| PHP domain protein [Clostridium botulinum Bf]
 gi|229262814|gb|ACQ53847.1| PHP domain protein [Clostridium botulinum Ba4 str. 657]
          Length = 225

 Score = 48.2 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 15 QVH-SSYSLLEGALSLNNILDKIAADQQPAIAITDTNN---LFSALEFSQKACAAGIQPI 70
           +H S YS L+  +SL  I+ +        + ITD  +   +    E    + A G   +
Sbjct: 6  HIHESKYS-LDSEISLEQIVKRAKEIGLNGVCITDHESNDIM---DEAHAYSKATGFLIL 61

Query: 71 IGCQL 75
          +G ++
Sbjct: 62 VGAEI 66


>gi|313126967|ref|YP_004037237.1| metal-dependent phosphoesterase, php family [Halogeometricum
           borinquense DSM 11551]
 gi|312293332|gb|ADQ67792.1| predicted metal-dependent phosphoesterase, PHP family
           [Halogeometricum borinquense DSM 11551]
          Length = 227

 Score = 48.2 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 12  VHLQVHSS--YSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           V L  HSS  Y   +    +  +L++  A    A+A+TD + + ++L+ +  A   G+  
Sbjct: 4   VELHAHSSLSYDARD---PIELLLEQAEAVGLDALAVTDHDEIDASLQAADIAEDYGLVG 60

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           I G ++       L +      P        L
Sbjct: 61  IPGMEVTSAAGHILALGINELIPAGLSYDETL 92


>gi|251796908|ref|YP_003011639.1| PHP domain protein [Paenibacillus sp. JDR-2]
 gi|247544534|gb|ACT01553.1| PHP domain protein [Paenibacillus sp. JDR-2]
          Length = 331

 Score = 48.2 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL-EFSQKACAAGIQPII 71
           L  H+ +S  +G  SL  +     A     +A+TD N +         +    G+  I 
Sbjct: 7  ELHSHTDHS--DGRQSLLELAQGAKALGFDCVALTDHNTMTGLKDREYVE-RETGLTIIS 63

Query: 72 GCQ 74
          G +
Sbjct: 64 GME 66


>gi|147920405|ref|YP_685820.1| DNA-directed DNA polymerase X [uncultured methanogenic archaeon
           RC-I]
 gi|110621216|emb|CAJ36494.1| DNA-directed DNA polymerase X [uncultured methanogenic archaeon
           RC-I]
          Length = 574

 Score = 48.2 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VH+ +S  +G+ S+ ++     A     +AI D 
Sbjct: 343 LHVHTEWS--DGSSSIQDMAMAARAKGYEYVAICDH 376


>gi|88812679|ref|ZP_01127926.1| metal-dependent phosphoesterase (PHP family) protein [Nitrococcus
           mobilis Nb-231]
 gi|88790095|gb|EAR21215.1| metal-dependent phosphoesterase (PHP family) protein [Nitrococcus
           mobilis Nb-231]
          Length = 277

 Score = 48.2 bits (113), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 62/248 (25%), Gaps = 65/248 (26%)

Query: 28  SLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQL------------ 75
           S  +++ + A      +A+TD +         + A   G++ I G ++            
Sbjct: 2   SPADLVVRAAERGVRVLALTDHDTTDGLPAACRSAQLRGVELIPGVEVSATWAGRTLHIV 61

Query: 76  ---------------------DIDMQDNLKMTNQGKTPFPTVPSIVLLVS-TAEG---YQ 110
                                 +     +    +G         +  L      G   Y 
Sbjct: 62  GLGVDADNALLQRGLTNIRSTRLQRAREIGRMLEGAGLEGAWDGVRTLAQGDVVGRAHYA 121

Query: 111 RLIELV--------SRM---YLLDQGKQSVRICLSWLQE-----IGTEGLIMLTGGSSGP 154
           RL  LV        S     YL       V +  + L E         GL +L       
Sbjct: 122 RL--LVLRGLAADPSEAFRRYLRRGRPGYVPVQWADLDEVVGWVHQAGGLAVLAHPLQYR 179

Query: 155 IDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVAT 214
             RAF         + L  F  + GD   + +           S     A    L     
Sbjct: 180 YPRAFL-------RRMLAAFAAVGGDA--LEIVTGGSTAEQV-STAATYARRLGLAGSLG 229

Query: 215 NNSLFLSE 222
           ++   L  
Sbjct: 230 SDFHTLHP 237


>gi|217077076|ref|YP_002334792.1| histidinol phosphatase [Thermosipho africanus TCF52B]
 gi|217036929|gb|ACJ75451.1| histidinol phosphatase [Thermosipho africanus TCF52B]
          Length = 238

 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 18/95 (18%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE----F------SQKA-C 63
           +HS++S  +   S+ +I+          I ITD    + A+E    F       ++A  
Sbjct: 5  HIHSNFSP-DSNSSVEDIVKYAREKNLK-IIITDH---YEAVEKDHNFKFDVKSYKEAMK 59

Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPS 98
            G+  ++G +   D +  + +  +          
Sbjct: 60 KYGL--LVGVEFGWDGKSKIDIDLKEFDFVILSYH 92


>gi|123968514|ref|YP_001009372.1| metal-dependent phosphoesterase [Prochlorococcus marinus str.
          AS9601]
 gi|123198624|gb|ABM70265.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Prochlorococcus marinus str. AS9601]
          Length = 215

 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 28/71 (39%), Gaps = 15/71 (21%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI------- 67
            H+ +S  +G+L    +L++   +    ++ITD +     ++  +      I       
Sbjct: 25 HCHTKFS--DGSLEPYELLEQAYKNNLKFLSITDHHT----IKAHEYINKNNILKNYPKD 78

Query: 68 --QPIIGCQLD 76
              I G +++
Sbjct: 79 SFTLISGIEIN 89


>gi|228993276|ref|ZP_04153192.1| PHP C-terminal domain protein [Bacillus pseudomycoides DSM 12442]
 gi|228766344|gb|EEM14987.1| PHP C-terminal domain protein [Bacillus pseudomycoides DSM 12442]
          Length = 572

 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++          +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRGRGYKFMAITDH 373


>gi|228999326|ref|ZP_04158906.1| PHP C-terminal domain protein [Bacillus mycoides Rock3-17]
 gi|229006881|ref|ZP_04164513.1| PHP C-terminal domain protein [Bacillus mycoides Rock1-4]
 gi|228754374|gb|EEM03787.1| PHP C-terminal domain protein [Bacillus mycoides Rock1-4]
 gi|228760523|gb|EEM09489.1| PHP C-terminal domain protein [Bacillus mycoides Rock3-17]
          Length = 572

 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++          +AITD 
Sbjct: 340 LHMHTTWS--DGAFSIEEMVQACRGRGYKFMAITDH 373


>gi|118479702|ref|YP_896853.1| hypothetical protein BALH_4136 [Bacillus thuringiensis str. Al
           Hakam]
 gi|196044868|ref|ZP_03112102.1| PHP domain protein [Bacillus cereus 03BB108]
 gi|225866526|ref|YP_002751904.1| PHP domain protein [Bacillus cereus 03BB102]
 gi|229186806|ref|ZP_04313961.1| PHP C-terminal domain protein [Bacillus cereus BGSC 6E1]
 gi|118418927|gb|ABK87346.1| DNA polymerase X family [Bacillus thuringiensis str. Al Hakam]
 gi|196024356|gb|EDX63029.1| PHP domain protein [Bacillus cereus 03BB108]
 gi|225787972|gb|ACO28189.1| PHP domain protein [Bacillus cereus 03BB102]
 gi|228596543|gb|EEK54208.1| PHP C-terminal domain protein [Bacillus cereus BGSC 6E1]
          Length = 573

 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  ++          +AITD 
Sbjct: 341 LHMHTTWS--DGAFSIEEMVQACRTRGYKFMAITDH 374


>gi|154248897|ref|YP_001409722.1| HisJ family histidinol phosphate phosphatase [Fervidobacterium
           nodosum Rt17-B1]
 gi|154152833|gb|ABS60065.1| histidinol phosphate phosphatase HisJ family [Fervidobacterium
           nodosum Rt17-B1]
          Length = 240

 Score = 47.9 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 70/209 (33%), Gaps = 40/209 (19%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA------LEFS-QKACAAGI 67
            +HS+YS  +   ++  IL+     +   I ITD   L  +      +E   ++     +
Sbjct: 9   HIHSNYSP-DSNSTIEEILETAREKRIEHIIITDHYELADSHFNVIDIETYRKEMEKYSL 67

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS-------TAEGYQR-LIELVSRM 119
              +G +L            +      T    VLL         T E Y+  L+ L+  +
Sbjct: 68  P--VGVEL-------GWDGIKELNIDTTKFDYVLLAHHYVEEPITQESYKNYLLRLLDIV 118

Query: 120 YLLDQGKQSVRICL------------SWLQEIGTEGL-IMLTGGSSGPIDRAF--FFNSS 164
              D       +                L +I TE L I+++ G    ++ +    +   
Sbjct: 119 KRFDSYHALAHLDFPRRYHPQREEFSKELYDIITEILKIVISNGKMLEVNVSPIKLYGEP 178

Query: 165 QVAEKRLLTFKKLFGDRLYVNLQRHRGYD 193
             +   L  +K L G  + +    H+  D
Sbjct: 179 NPSIDILKLYKSLGGRNITIGSDAHKLED 207


>gi|73667901|ref|YP_303916.1| isoleucyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
 gi|72395063|gb|AAZ69336.1| isoleucyl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
          Length = 224

 Score = 47.9 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 18/90 (20%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL-FSALEFSQKACAAGIQPIIG 72
           L VHS YS  +   S ++IL           AI D + +    +          ++   G
Sbjct: 5   LHVHSEYS-KDSKSSHDDILKIARKRGLDGFAICDHDTVEGGLI-----CKKRALEL--G 56

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
            +L +     +  +            I++L
Sbjct: 57  LELTVIPGVEVSSSKG---------HILVL 77


>gi|15679475|ref|NP_276592.1| hypothetical protein MTH1478 [Methanothermobacter
          thermautotrophicus str. Delta H]
 gi|2622593|gb|AAB85953.1| conserved protein [Methanothermobacter thermautotrophicus str.
          Delta H]
          Length = 154

 Score = 47.9 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
           +HS YS  +   +   IL + +A    A+A+ D N +  ++   +++   GI  +   +
Sbjct: 7  HIHSVYS-GDARGTPREILRRASAVGLDAVAVADHNTMKGSIIALKESRGMGITVVPAME 65

Query: 75 LDIDMQDNLKMTNQGKTPFPTVP 97
          L       + +  Q +      P
Sbjct: 66 LSTSAGHIVALGIQEEISRGLTP 88


>gi|212223554|ref|YP_002306790.1| hypothetical protein TON_0408 [Thermococcus onnurineus NA1]
 gi|212008511|gb|ACJ15893.1| hypothetical protein, conserved [Thermococcus onnurineus NA1]
          Length = 206

 Score = 47.9 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 15/71 (21%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV-----DSKKLNRRVLESLVFAGALD 892
           SL  + G+G      I+E    +PF S ED   RV      +K + +RV+         D
Sbjct: 136 SLELLPGIGKKHMWEIIEERKKEPFKSFEDLRHRVKGLPDPAKMITKRVV---------D 186

Query: 893 CF-GYSRMQLL 902
              G  R +L 
Sbjct: 187 ELEGKDRYRLF 197


>gi|302036874|ref|YP_003797196.1| hypothetical protein NIDE1531 [Candidatus Nitrospira defluvii]
 gi|190343288|gb|ACE75676.1| phosphoesterase [Candidatus Nitrospira defluvii]
 gi|300604938|emb|CBK41271.1| conserved protein of unknown function, PHP family Phosphoesterase
          [Candidatus Nitrospira defluvii]
          Length = 282

 Score = 47.9 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+++S  +G+ S  +++         A+AITD + +    E +      GI+ + G 
Sbjct: 6  LHLHTTHS--DGSFSTRDVMAFAKQAGVTALAITDHDIVEGIAEATAIGAELGIEVVPGV 63

Query: 74 QLD 76
          ++ 
Sbjct: 64 EIS 66


>gi|170755093|ref|YP_001783223.1| phosphotransferase domain-containing protein [Clostridium
          botulinum B1 str. Okra]
 gi|169120305|gb|ACA44141.1| PHP domain protein [Clostridium botulinum B1 str. Okra]
          Length = 225

 Score = 47.9 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 15 QVH-SSYSLLEGALSLNNILDKIAADQQPAIAITDTNN---LFSALEFSQKACAAGIQPI 70
           +H S YS L+  +SL  I+ +        + ITD  +   +    E    + A G   +
Sbjct: 6  HIHESKYS-LDSEISLEEIVKRGKEIGLDGVCITDHESSDIM---DEAHTYSKATGFLIL 61

Query: 71 IGCQL 75
          IG ++
Sbjct: 62 IGAEI 66


>gi|169350513|ref|ZP_02867451.1| hypothetical protein CLOSPI_01281 [Clostridium spiroforme DSM 1552]
 gi|169292833|gb|EDS74966.1| hypothetical protein CLOSPI_01281 [Clostridium spiroforme DSM 1552]
          Length = 297

 Score = 47.9 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 62/182 (34%), Gaps = 31/182 (17%)

Query: 4   YLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            +EK   ++ L +HS YS  +G      +++K        +AI D N+    ++  +++ 
Sbjct: 1   MMEK---YIDLHMHSKYSD-DGEFKPAELVEKCHKKNIKIMAIADHNS----VKAIEESK 52

Query: 64  AA----GIQPIIGCQLDIDMQ--DNLKMTNQGKTPFPTVPSI---VLLVSTAEGYQRLIE 114
                  I  I   ++D   +  D   +            S+   +L     E  +    
Sbjct: 53  KVANKLNITYIPAIEIDCTYKGIDLHVLGYGIDYHHEDFESLEKNIL---NQE-LKN--- 105

Query: 115 LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTF 174
             S+  +         +    L+++   G  + TG   G I      +   +    L  +
Sbjct: 106 --SKEKIELTNNLGFDVDKEALKKLSASG--VYTGEMFGEI---LLNDQRYLDHPLLKPY 158

Query: 175 KK 176
           +K
Sbjct: 159 RK 160


>gi|92119329|ref|YP_579058.1| hypothetical protein Nham_3908 [Nitrobacter hamburgensis X14]
 gi|91802223|gb|ABE64598.1| hypothetical protein Nham_3908 [Nitrobacter hamburgensis X14]
          Length = 71

 Score = 47.9 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 8  SPSFVHLQVHSSYSLLEGALSLNNILD 34
          +  +  LQV S +S L GA S   +  
Sbjct: 2  TSRYAELQVTSHFSFLRGASSCEELFA 28


>gi|268589489|ref|ZP_06123710.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Providencia rettgeri DSM 1131]
 gi|291315157|gb|EFE55610.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Providencia rettgeri DSM 1131]
          Length = 299

 Score = 47.9 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--SQKACAAGIQPII 71
          L  H++ S  +G L+   ++++        +AITD +     LE           I+ + 
Sbjct: 22 LHSHTNAS--DGDLTPAELIERAVEKGVNILAITDHDTCEGVLEARRYLAEHERPIELVN 79

Query: 72 GCQLD 76
          G ++ 
Sbjct: 80 GVEIS 84


>gi|218886428|ref|YP_002435749.1| hypothetical protein DvMF_1332 [Desulfovibrio vulgaris str.
          'Miyazaki F']
 gi|218757382|gb|ACL08281.1| PHP domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 219

 Score = 47.9 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L VH+ +S  + +++    +         A+A+TD 
Sbjct: 4  LHVHTCFS--DSSMTPATAVRFARLAGYRAVALTDH 37


>gi|149928515|ref|ZP_01916747.1| PHP-like protein [Limnobacter sp. MED105]
 gi|149822775|gb|EDM82030.1| PHP-like protein [Limnobacter sp. MED105]
          Length = 232

 Score = 47.9 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G L    +  + AA+     ++TD + +      ++ A    +  I G 
Sbjct: 24 LHCHSTVS--DGTLEPEELAARAAANGVQIWSLTDHDEVSGLARAARAAAEHNLIFIPGV 81

Query: 74 QLDIDM 79
          ++ +  
Sbjct: 82 EISVTW 87


>gi|313608472|gb|EFR84389.1| DNA polymerase III, alpha subunit [Listeria monocytogenes FSL
           F2-208]
          Length = 62

 Score = 47.9 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 134 SWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG-DRLYVNLQRHRGY 192
           SWL+   +  LI ++ G+ G I+R     +   A +       +FG + +Y++ Q+   +
Sbjct: 1   SWLRAYSS-NLIAISPGAKGEIERLLMEENHGGALEAYGNLVDIFGKESVYLSAQKENPH 59

Query: 193 D 193
            
Sbjct: 60  Q 60


>gi|313125440|ref|YP_004035704.1| metal-dependent phosphoesterase, php family [Halogeometricum
          borinquense DSM 11551]
 gi|312291805|gb|ADQ66265.1| predicted metal-dependent phosphoesterase, PHP family
          [Halogeometricum borinquense DSM 11551]
          Length = 259

 Score = 47.9 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 7/70 (10%)

Query: 15 QVHSS--YSLLEGALSLNNIL-DKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           VHS   Y   +       ++ ++ A     A+ ITD + +  ++  ++ A   G+  I 
Sbjct: 10 HVHSDASYDAHD----PVELILEQAAEIGLDAVVITDHDVIHESVRAAELAPMYGLVGIP 65

Query: 72 GCQLDIDMQD 81
          G ++      
Sbjct: 66 GVEVSTADGH 75


>gi|256831944|ref|YP_003160671.1| PHP domain-containing protein [Jonesia denitrificans DSM 20603]
 gi|256685475|gb|ACV08368.1| PHP domain protein [Jonesia denitrificans DSM 20603]
          Length = 280

 Score = 47.9 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  S  +G  S   ++    +     +A+TD ++       +++A   G+  + GC
Sbjct: 5  LHTHSHVS--DGTDSPEQVMRDAHSAGLDVVALTDHDSTLGWEAAARQARDLGLIFVPGC 62

Query: 74 QLD 76
          ++ 
Sbjct: 63 EIS 65


>gi|159905085|ref|YP_001548747.1| phosphotransferase domain-containing protein [Methanococcus
          maripaludis C6]
 gi|159886578|gb|ABX01515.1| PHP domain protein [Methanococcus maripaludis C6]
          Length = 299

 Score = 47.9 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 15/73 (20%)

Query: 15 QVHSSYSLLEGALS---------LNN---ILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
           +H+ YS   G +          +     ++    A+    IA+TD N +  ALE  +  
Sbjct: 11 HIHTKYS---GMMKYMGLKFPDSVEEPLKVMKCAKANGMDIIAVTDHNTIKGALETKKYE 67

Query: 63 CAAGIQPIIGCQL 75
             GI+ ++G ++
Sbjct: 68 KEFGIEVVVGSEI 80


>gi|261402393|ref|YP_003246617.1| PHP domain protein [Methanocaldococcus vulcanius M7]
 gi|261369386|gb|ACX72135.1| PHP domain protein [Methanocaldococcus vulcanius M7]
          Length = 223

 Score = 47.9 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ +S  +G L    ++ +    +  AIAITD 
Sbjct: 12 HTHTIFS--DGELLPAELVRRAKVLKHRAIAITDH 44


>gi|207722876|ref|YP_002253310.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
 gi|207743519|ref|YP_002259911.1| hypothetical protein RSIPO_01698 [Ralstonia solanacearum IPO1609]
 gi|206588060|emb|CAQ18640.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
 gi|206594917|emb|CAQ61844.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609]
          Length = 286

 Score = 47.9 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS--ALEFSQKACAAGIQPII 71
           L  HS  ++ +G L+   +  + AA      A+TD + +    A    + A + G+  + 
Sbjct: 14  LHCHS--TVSDGLLAPREVAARAAAHGVTLWALTDHDEVGGQAAAR--EAAESLGMGYLP 69

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           G ++ +                     +  L  T  G
Sbjct: 70  GVEISVTWAGRTLHIVGLGIDPDDAALVQGLARTRSG 106


>gi|212715495|ref|ZP_03323623.1| hypothetical protein BIFCAT_00392 [Bifidobacterium catenulatum
          DSM 16992]
 gi|212661577|gb|EEB22152.1| hypothetical protein BIFCAT_00392 [Bifidobacterium catenulatum
          DSM 16992]
          Length = 292

 Score = 47.9 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            H+ +S  +G  +   +L +  + +   +AI D +      +    +   G+  + G +
Sbjct: 17 HCHTVFS--DGTETPCTLLKEARSLRLHGVAIADHDTTSGWQDALDASRQIGLPLLRGTE 74

Query: 75 LD 76
          + 
Sbjct: 75 IT 76


>gi|167910603|ref|ZP_02497694.1| hypothetical protein Bpse112_08915 [Burkholderia pseudomallei 112]
          Length = 125

 Score = 47.9 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KG+G   ++ I++    + PF   +D  +RV  K L  + +  L  AG
Sbjct: 33  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRV--KGLGAKSVAHLEAAG 83


>gi|167823827|ref|ZP_02455298.1| hypothetical protein Bpseu9_09115 [Burkholderia pseudomallei 9]
          Length = 225

 Score = 47.9 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KG+G   ++ I++    + PF   +D  +RV  K L  + +  L  AG
Sbjct: 33  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRV--KGLGAKSVAHLEAAG 83


>gi|167815418|ref|ZP_02447098.1| hypothetical protein Bpse9_09754 [Burkholderia pseudomallei 91]
          Length = 129

 Score = 47.9 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KG+G   ++ I++    + PF   +D  +RV  K L  + +  L  AG
Sbjct: 33  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRV--KGLGAKSVAHLEAAG 83


>gi|134277120|ref|ZP_01763835.1| putative comE protein [Burkholderia pseudomallei 305]
 gi|134250770|gb|EBA50849.1| putative comE protein [Burkholderia pseudomallei 305]
          Length = 202

 Score = 47.9 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KG+G   ++ I++    + PF   +D  +RV  K L  + +  L  AG
Sbjct: 33  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRV--KGLGAKSVAHLEAAG 83


>gi|126439923|ref|YP_001059256.1| putative comE protein [Burkholderia pseudomallei 668]
 gi|254257971|ref|ZP_04949025.1| putative comE protein [Burkholderia pseudomallei 1710a]
 gi|254297400|ref|ZP_04964853.1| putative comE protein [Burkholderia pseudomallei 406e]
 gi|126219416|gb|ABN82922.1| putative comE protein [Burkholderia pseudomallei 668]
 gi|157807461|gb|EDO84631.1| putative comE protein [Burkholderia pseudomallei 406e]
 gi|254216660|gb|EET06044.1| putative comE protein [Burkholderia pseudomallei 1710a]
          Length = 231

 Score = 47.9 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KG+G   ++ I++    + PF   +D  +RV  K L  + +  L  AG
Sbjct: 62  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRV--KGLGAKSVAHLEAAG 112


>gi|124383988|ref|YP_001026041.1| hypothetical protein BMA10229_A0032 [Burkholderia mallei NCTC
           10229]
 gi|124292008|gb|ABN01277.1| conserved domain protein [Burkholderia mallei NCTC 10229]
          Length = 231

 Score = 47.9 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KG+G   ++ I++    + PF   +D  +RV  K L  + +  L  AG
Sbjct: 62  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRV--KGLGAKSVAHLEAAG 112


>gi|85859087|ref|YP_461289.1| hypothetical protein SYN_03192 [Syntrophus aciditrophicus SB]
 gi|85722178|gb|ABC77121.1| PHP family phosphoesterase [Syntrophus aciditrophicus SB]
          Length = 194

 Score = 47.9 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 16/98 (16%)

Query: 14  LQVHSSYS---LLEGALSLNNILDKIAADQQPAIAITDTN---N----LFSALEFSQK-A 62
           L  H+ +S    L      + ++ +       A+A+TD     N    L   +   +K +
Sbjct: 4   LHTHTIHSDGEFL-----PSELVRRARVVGYRAMALTDHGDHSNLELILPGIVRVCKKLS 58

Query: 63  CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
            A  +  I G +L     + +    Q          +V
Sbjct: 59  KAYDMPVIPGIELTHVPPEYIMELVQEARGMGAGIVVV 96


>gi|53723602|ref|YP_103034.1| hypothetical protein BMA1375 [Burkholderia mallei ATCC 23344]
 gi|52427025|gb|AAU47618.1| conserved domain protein [Burkholderia mallei ATCC 23344]
          Length = 321

 Score = 47.9 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KG+G   ++ I++    + PF   +D  +RV  K L  + +  L  AG
Sbjct: 152 ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRV--KGLGAKSVAHLEAAG 202


>gi|53719120|ref|YP_108106.1| hypothetical protein BPSL1486 [Burkholderia pseudomallei K96243]
 gi|254197933|ref|ZP_04904355.1| putative comE protein [Burkholderia pseudomallei S13]
 gi|52209534|emb|CAH35487.1| hypothetical protein BPSL1486 [Burkholderia pseudomallei K96243]
 gi|169654674|gb|EDS87367.1| putative comE protein [Burkholderia pseudomallei S13]
          Length = 231

 Score = 47.9 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KG+G   ++ I++    + PF   +D  +RV  K L  + +  L  AG
Sbjct: 62  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRV--KGLGAKSVAHLEAAG 112


>gi|126452843|ref|YP_001066523.1| putative comE protein [Burkholderia pseudomallei 1106a]
 gi|167845368|ref|ZP_02470876.1| hypothetical protein BpseB_08773 [Burkholderia pseudomallei B7210]
 gi|167902364|ref|ZP_02489569.1| hypothetical protein BpseN_08842 [Burkholderia pseudomallei NCTC
           13177]
 gi|217421283|ref|ZP_03452787.1| putative comE protein [Burkholderia pseudomallei 576]
 gi|226197421|ref|ZP_03792998.1| putative comE protein [Burkholderia pseudomallei Pakistan 9]
 gi|237812579|ref|YP_002897030.1| hypothetical protein GBP346_A2329 [Burkholderia pseudomallei
           MSHR346]
 gi|242315540|ref|ZP_04814556.1| putative comE protein [Burkholderia pseudomallei 1106b]
 gi|254189088|ref|ZP_04895599.1| putative comE protein [Burkholderia pseudomallei Pasteur 52237]
 gi|126226485|gb|ABN90025.1| putative comE protein [Burkholderia pseudomallei 1106a]
 gi|157936767|gb|EDO92437.1| putative comE protein [Burkholderia pseudomallei Pasteur 52237]
 gi|217395025|gb|EEC35043.1| putative comE protein [Burkholderia pseudomallei 576]
 gi|225930800|gb|EEH26810.1| putative comE protein [Burkholderia pseudomallei Pakistan 9]
 gi|237503640|gb|ACQ95958.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346]
 gi|242138779|gb|EES25181.1| putative comE protein [Burkholderia pseudomallei 1106b]
          Length = 202

 Score = 47.9 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KG+G   ++ I++    + PF   +D  +RV  K L  + +  L  AG
Sbjct: 33  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRV--KGLGAKSVAHLEAAG 83


>gi|76811864|ref|YP_333782.1| hypothetical protein BURPS1710b_2387 [Burkholderia pseudomallei
           1710b]
 gi|167738228|ref|ZP_02411002.1| hypothetical protein Bpse14_09180 [Burkholderia pseudomallei 14]
 gi|167893912|ref|ZP_02481314.1| hypothetical protein Bpse7_09151 [Burkholderia pseudomallei 7894]
 gi|167918628|ref|ZP_02505719.1| hypothetical protein BpseBC_08740 [Burkholderia pseudomallei
           BCC215]
 gi|254179521|ref|ZP_04886120.1| putative comE protein [Burkholderia pseudomallei 1655]
 gi|76581317|gb|ABA50792.1| hypothetical protein BURPS1710b_2387 [Burkholderia pseudomallei
           1710b]
 gi|184210061|gb|EDU07104.1| putative comE protein [Burkholderia pseudomallei 1655]
          Length = 202

 Score = 47.9 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KG+G   ++ I++    + PF   +D  +RV  K L  + +  L  AG
Sbjct: 33  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRV--KGLGAKSVAHLEAAG 83


>gi|67639677|ref|ZP_00438517.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
 gi|121599878|ref|YP_993184.1| hypothetical protein BMASAVP1_A1865 [Burkholderia mallei SAVP1]
 gi|126450439|ref|YP_001080690.1| hypothetical protein BMA10247_1136 [Burkholderia mallei NCTC 10247]
 gi|167003459|ref|ZP_02269245.1| conserved domain protein [Burkholderia mallei PRL-20]
 gi|254177923|ref|ZP_04884578.1| conserved domain protein [Burkholderia mallei ATCC 10399]
 gi|254199980|ref|ZP_04906346.1| conserved domain protein [Burkholderia mallei FMH]
 gi|254206313|ref|ZP_04912665.1| conserved domain protein [Burkholderia mallei JHU]
 gi|121228688|gb|ABM51206.1| conserved domain protein [Burkholderia mallei SAVP1]
 gi|126243309|gb|ABO06402.1| conserved domain protein [Burkholderia mallei NCTC 10247]
 gi|147749576|gb|EDK56650.1| conserved domain protein [Burkholderia mallei FMH]
 gi|147753756|gb|EDK60821.1| conserved domain protein [Burkholderia mallei JHU]
 gi|160698962|gb|EDP88932.1| conserved domain protein [Burkholderia mallei ATCC 10399]
 gi|238520266|gb|EEP83728.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
 gi|243061020|gb|EES43206.1| conserved domain protein [Burkholderia mallei PRL-20]
          Length = 202

 Score = 47.9 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L ++KG+G   ++ I++    + PF   +D  +RV  K L  + +  L  AG
Sbjct: 33  ALESVKGLGPVKSKAIIDERAKNGPFKDADDLANRV--KGLGAKSVAHLEAAG 83


>gi|258405709|ref|YP_003198451.1| hypothetical protein Dret_1589 [Desulfohalobium retbaense DSM
          5692]
 gi|257797936|gb|ACV68873.1| PHP domain protein [Desulfohalobium retbaense DSM 5692]
          Length = 220

 Score = 47.9 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 14/58 (24%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L  H+ +S  +G L    +  +       A+A+TD             A A+ +QPI+
Sbjct: 4  LHTHTVFS--DGELIPAELARRARVAGYRAVAMTDH------------ADASNLQPIL 47


>gi|56460848|ref|YP_156129.1| metal-dependent phosphoesterase [Idiomarina loihiensis L2TR]
 gi|56179858|gb|AAV82580.1| Predicted metal-dependent phosphoesterase, PHP family [Idiomarina
           loihiensis L2TR]
          Length = 275

 Score = 47.9 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 4/91 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  HS+ S  +G+LS++ ++ +        +AITD + +    E S+        I+ + 
Sbjct: 6   LHCHSTCS--DGSLSVSELVLRACEQNVDVLAITDHDCVDGLAEASRLIEHENLPIELVN 63

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           G ++                     P  VLL
Sbjct: 64  GVEISCRWHSFEIHIVGLNIDPDAEPLKVLL 94


>gi|303238207|ref|ZP_07324743.1| PHP domain protein [Acetivibrio cellulolyticus CD2]
 gi|302594253|gb|EFL63965.1| PHP domain protein [Acetivibrio cellulolyticus CD2]
          Length = 262

 Score = 47.9 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA--CAAGIQPII 71
          L +HS  ++ +G+ +++ I+D    +    IAITD + +        K    +  I+ I 
Sbjct: 5  LHIHS--TVSDGSKTIHEIIDMATNNGLDFIAITDHDTMA-----HAKLLPKSPAIKVIA 57

Query: 72 GCQLD 76
          G ++ 
Sbjct: 58 GIEIS 62


>gi|15669783|ref|NP_248596.1| hypothetical protein MJ_1587 [Methanocaldococcus jannaschii DSM
          2661]
 gi|2496191|sp|Q58982|Y1587_METJA RecName: Full=Uncharacterized protein MJ1587
 gi|1500483|gb|AAB99616.1| hypothetical protein MJ_1587 [Methanocaldococcus jannaschii DSM
          2661]
          Length = 171

 Score = 47.9 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 15/96 (15%)

Query: 14 LQVHSSYSLLEGALS---------LNN---ILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          L +H+ YS   G            +     IL          +AITD N +   +E  + 
Sbjct: 5  LHIHTKYS---GIGKFWKLKFPDSVEEPRNILKVAKKKGIEVVAITDHNTIRGGVETKKL 61

Query: 62 ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
              G++ +IG ++     + + +      P    P
Sbjct: 62 EKEFGVEVVIGSEIMTTEGEIIGLFLNEDIPKGLSP 97


>gi|152967979|ref|YP_001363763.1| hypothetical protein Krad_4036 [Kineococcus radiotolerans SRS30216]
 gi|151362496|gb|ABS05499.1| PHP domain protein [Kineococcus radiotolerans SRS30216]
          Length = 381

 Score = 47.9 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H+  S  +G   L  +    A      +A+TD 
Sbjct: 129 LHTHTDAS--DGGSPLAEMAATAAELGHEYLAVTDH 162


>gi|222528703|ref|YP_002572585.1| hypothetical protein Athe_0697 [Caldicellulosiruptor bescii DSM
           6725]
 gi|222455550|gb|ACM59812.1| conserved hypothetical protein [Caldicellulosiruptor bescii DSM
           6725]
          Length = 433

 Score = 47.9 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 2/88 (2%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +H+ YS      S +  +   A    P   I D + +  + EF      AGI   IG +
Sbjct: 48  HIHTFYSF--SPYSPSKAIYMAAKSGLPTAGIMDHDTIAGSNEFIVAGKLAGIATTIGVE 105

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
              D    L    +   P     + V +
Sbjct: 106 CRADFSKTLLSGKKINNPDQHSIAYVAI 133


>gi|167586539|ref|ZP_02378927.1| helix-hairpin-helix motif [Burkholderia ubonensis Bu]
          Length = 117

 Score = 47.9 bits (112), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L  IKG+G   A+ I++   A  PF + +D  +RV  K +    +E L   G
Sbjct: 31  ALIGIKGIGPARAKAILDERSAHGPFKNADDLAARV--KGMGGHTVERLQREG 81


>gi|218780255|ref|YP_002431573.1| response regulator receiver protein [Desulfatibacillum
          alkenivorans AK-01]
 gi|218761639|gb|ACL04105.1| Protein with response regulator receiver domain
          [Desulfatibacillum alkenivorans AK-01]
          Length = 352

 Score = 47.9 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  H+ +S  +G L    +  +       A+A+TD  
Sbjct: 4  LHTHTIFS--DGVLIPAELARRAQVAGLTAMAMTDHG 38


>gi|238798393|ref|ZP_04641875.1| hypothetical protein ymoll0001_19720 [Yersinia mollaretii ATCC
          43969]
 gi|238717778|gb|EEQ09612.1| hypothetical protein ymoll0001_19720 [Yersinia mollaretii ATCC
          43969]
          Length = 309

 Score = 47.9 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-ACAA-GIQPII 71
          L  H++ S  +G+LS + ++ + A  +   +AITD +      E +   A     ++ I 
Sbjct: 22 LHSHTTAS--DGSLSPSALVIRAAQMRVGVLAITDHDTTAGLAEAAATIAQEKLALRLIS 79

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 80 GVEISTLWENH 90


>gi|32471446|ref|NP_864439.1| DNA polymerase beta family protein [Rhodopirellula baltica SH 1]
 gi|32443287|emb|CAD72118.1| DNA polymerase beta family [Rhodopirellula baltica SH 1]
          Length = 589

 Score = 47.9 bits (112), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 5/48 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSALEF 58
           L +H+  S  +G  ++  + D         IAITD +    +   L+ 
Sbjct: 355 LHMHT--SATDGQNTIAEMADAAIERGLKYIAITDHSKRVTMAGGLDA 400


>gi|118470220|ref|YP_890658.1| hypothetical protein MSMEG_6445 [Mycobacterium smegmatis str. MC2
           155]
 gi|118171507|gb|ABK72403.1| PHP domain protein [Mycobacterium smegmatis str. MC2 155]
          Length = 334

 Score = 47.5 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS++S  +G+  +  ++           A+TD 
Sbjct: 100 LHVHSNWS--DGSAPIEEMMMAARDLGHEYCALTDH 133


>gi|315446551|ref|YP_004079430.1| PHP family phosphohydrolase, histidinol phosphatase [Mycobacterium
           sp. Spyr1]
 gi|315264854|gb|ADU01596.1| PHP family phosphohydrolase, histidinol phosphatase [Mycobacterium
           sp. Spyr1]
          Length = 334

 Score = 47.5 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS++S  +G+  +  ++           A+TD 
Sbjct: 100 LHVHSNWS--DGSAPIEEMMLAARDLGHEYCALTDH 133


>gi|282900858|ref|ZP_06308796.1| PHP-like protein [Cylindrospermopsis raciborskii CS-505]
 gi|281194257|gb|EFA69216.1| PHP-like protein [Cylindrospermopsis raciborskii CS-505]
          Length = 228

 Score = 47.5 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            H+ +S  +G L  + ++++  A     +AITD ++    +E  +KA 
Sbjct: 34 HAHTVFS--DGKLHPHVLMEQAIAIGLKGLAITDHHS----VEGYEKAK 76


>gi|188586105|ref|YP_001917650.1| PHP domain protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350792|gb|ACB85062.1| PHP domain protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 276

 Score = 47.5 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA----LEFSQKACAAGIQP 69
          L +H++ S  +G L  + I+D+    Q   IAI D +         ++  ++   + I  
Sbjct: 7  LHIHTTAS--DGVLHPHEIIDRAEEKQIDYIAIADHDTFLGVEKLLVD--KRLKRSKITL 62

Query: 70 IIGCQLDIDMQDN 82
          I   ++  D+ D 
Sbjct: 63 IPAIEISTDLADE 75


>gi|110667649|ref|YP_657460.1| histidinol phosphatase [Haloquadratum walsbyi DSM 16790]
 gi|109625396|emb|CAJ51820.1| probable histidinol phosphatase [Haloquadratum walsbyi DSM 16790]
          Length = 227

 Score = 47.5 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 12  VHLQVHSSYSLL-EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           V L  HS  SL  +G   +  +L++ AA    A+A+TD + + ++L  ++ A    +  I
Sbjct: 4   VELHAHS--SLSYDGHDPVELLLEQAAAIGLDALAVTDHDEIDASLRAAELASEYDLIGI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
              ++       L      + P        +
Sbjct: 62  PAMEVSSAAGHVLGFGITEQVPAGLSYDETV 92


>gi|145221713|ref|YP_001132391.1| hypothetical protein Mflv_1121 [Mycobacterium gilvum PYR-GCK]
 gi|145214199|gb|ABP43603.1| PHP C-terminal domain protein [Mycobacterium gilvum PYR-GCK]
          Length = 334

 Score = 47.5 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS++S  +G+  +  ++           A+TD 
Sbjct: 100 LHVHSNWS--DGSAPIEEMMLAARDLGHEYCALTDH 133


>gi|89098888|ref|ZP_01171768.1| hypothetical protein B14911_05961 [Bacillus sp. NRRL B-14911]
 gi|89086292|gb|EAR65413.1| hypothetical protein B14911_05961 [Bacillus sp. NRRL B-14911]
          Length = 572

 Score = 47.5 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA ++  + +         +AITD 
Sbjct: 340 LHMHSTWS--DGAHTIEEMAEACRKRGYQYLAITDH 373


>gi|256396923|ref|YP_003118487.1| PHP domain-containing protein [Catenulispora acidiphila DSM
          44928]
 gi|256363149|gb|ACU76646.1| PHP domain protein [Catenulispora acidiphila DSM 44928]
          Length = 288

 Score = 47.5 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 5/57 (8%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS---ALEFSQKACAAGI 67
          L  H++ S  +G      ++    A     +AITD +       A    +    AG+
Sbjct: 5  LHAHTTAS--DGTFEPAELVGMAEAAGLTVVAITDHDGTAGWSEARRALRYGHEAGV 59


>gi|237738045|ref|ZP_04568526.1| phosphotransferase domain-containing protein [Fusobacterium
          mortiferum ATCC 9817]
 gi|229419925|gb|EEO34972.1| phosphotransferase domain-containing protein [Fusobacterium
          mortiferum ATCC 9817]
          Length = 276

 Score = 47.5 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
           +H+  S  +G  +   I+ +   +   A+AITD + +    +  + A   G++ I G +
Sbjct: 6  HIHTIES--DGTYTPEEIIVRAIKNNVIALAITDHDTVSGVEKGKEIADKYGMEFIKGIE 63

Query: 75 LDIDMQD 81
          +  +  +
Sbjct: 64 ISCNEDN 70


>gi|205374418|ref|ZP_03227215.1| hypothetical protein Bcoam_15021 [Bacillus coahuilensis m4-4]
          Length = 311

 Score = 47.5 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA SL  ++++        +AITD 
Sbjct: 252 LHMHTTWS--DGAYSLEEMVEECRRLGYSYMAITDH 285


>gi|158320577|ref|YP_001513084.1| phosphotransferase domain-containing protein [Alkaliphilus
          oremlandii OhILAs]
 gi|158140776|gb|ABW19088.1| PHP domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 275

 Score = 47.5 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
            HS+ S  +G      +++         IAITD + 
Sbjct: 7  HTHSTAS--DGVYRPKELVEYALEKGLSGIAITDHDT 41


>gi|311104922|ref|YP_003977775.1| helix-hairpin-helix DNA-binding, class 1 [Achromobacter
           xylosoxidans A8]
 gi|310759611|gb|ADP15060.1| helix-hairpin-helix DNA-binding, class 1 [Achromobacter
           xylosoxidans A8]
          Length = 164

 Score = 47.5 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGAL 891
           L  ++G+G   A  I++       F+SL D   RV  + +  +  ++L  AG L
Sbjct: 67  LEGVRGIGPRMAEIIVKERERGGKFESLNDLAERV--RGIGPKKAQALQEAGLL 118


>gi|119715701|ref|YP_922666.1| phosphotransferase domain-containing protein [Nocardioides sp.
           JS614]
 gi|119536362|gb|ABL80979.1| PHP C-terminal domain protein [Nocardioides sp. JS614]
          Length = 296

 Score = 47.5 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S  +G  +   ++   AA     +AITD +      E ++ A AAG+  + G 
Sbjct: 5   LHTHSRAS--DGTDTPTELVRAAAATGLDVVAITDHDTAAGWAEATRAAEAAGVDVVPGM 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           ++  + +        G  P PT P +V
Sbjct: 63  EISTEHRGRSVHL-LGYLPDPTYPPLV 88


>gi|284165032|ref|YP_003403311.1| PHP domain protein [Haloterrigena turkmenica DSM 5511]
 gi|284014687|gb|ADB60638.1| PHP domain protein [Haloterrigena turkmenica DSM 5511]
          Length = 228

 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 12  VHLQVHSSYSLL-EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           V L  HS  SL  +G   +  IL++  A    AIA+TD + + ++LE +++A   G+  I
Sbjct: 4   VELHTHS--SLSYDGRDPVELILEQADAVGLDAIAVTDHDEIDASLEAAERAADYGLLGI 61

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
            G ++       L    +   P        L
Sbjct: 62  PGMEISSKAGHVLGFGLEEAVPPGLSYESTL 92


>gi|166365135|ref|YP_001657408.1| hypothetical protein MAE_23940 [Microcystis aeruginosa NIES-843]
 gi|166087508|dbj|BAG02216.1| hypothetical protein MAE_23940 [Microcystis aeruginosa NIES-843]
          Length = 546

 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 5/128 (3%)

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
           ++    ++    +H    A++      +  H+  EF     T ++   E IK   +  R+
Sbjct: 414 VITGSHNWSRAANHQNDEALVIIDNPTVAAHFDREFQYLYRTAKLGLPETIKNRIEQDRK 473

Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              Q +    +                L ++ G+    A  I+ A   KPF SLED   R
Sbjct: 474 NCPQSVTIKSDRLINLNTATKEE----LDSLPGISGKLAEKIIAARQQKPFTSLEDL-DR 528

Query: 872 VDSKKLNR 879
           V      +
Sbjct: 529 VSGIGQGK 536


>gi|256811039|ref|YP_003128408.1| PHP domain protein [Methanocaldococcus fervens AG86]
 gi|256794239|gb|ACV24908.1| PHP domain protein [Methanocaldococcus fervens AG86]
          Length = 289

 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 15/74 (20%)

Query: 14 LQVHSSYSLLEGALS---------LNN---ILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          L +H+ YS   G            +     IL          +AITD N +   +E  + 
Sbjct: 5  LHIHTKYS---GICKFWKLSFPDSVEEPRNILKVAKKRGIGVLAITDHNTIRGGVETKKI 61

Query: 62 ACAAGIQPIIGCQL 75
              G++ I+G ++
Sbjct: 62 EKEFGVEVIVGSEI 75


>gi|331672791|ref|ZP_08373577.1| protein TrpH [Escherichia coli TA280]
 gi|331070012|gb|EGI41381.1| protein TrpH [Escherichia coli TA280]
          Length = 293

 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/74 (16%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAISPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDNLKM 85
          G ++    +++   
Sbjct: 70 GVEISTVWENHEIR 83


>gi|256810071|ref|YP_003127440.1| PHP domain protein [Methanocaldococcus fervens AG86]
 gi|256793271|gb|ACV23940.1| PHP domain protein [Methanocaldococcus fervens AG86]
          Length = 218

 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 23/77 (29%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--SQK-------ACAA 65
            H+ +S  +G L  + ++ +    +  AIAITD        +F   ++       A   
Sbjct: 6  HTHTVFS--DGELIPSELVRRAKVLRHKAIAITDHA------DFSNYKELIEKTTIAKEE 57

Query: 66 ------GIQPIIGCQLD 76
                 I  I+G +L 
Sbjct: 58 LKKYWDDIVVIVGVELT 74


>gi|320176680|gb|EFW51718.1| hypothetical protein SDB_00824 [Shigella dysenteriae CDC 74-1112]
          Length = 293

 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H+  S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 12 LHSHTIAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|325677365|ref|ZP_08157030.1| DNA polymerase beta chain [Rhodococcus equi ATCC 33707]
 gi|325551828|gb|EGD21525.1| DNA polymerase beta chain [Rhodococcus equi ATCC 33707]
          Length = 341

 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS +S  +G   ++ ++   A       A+TD 
Sbjct: 104 LHVHSDWS--DGGSPIDEMMRAAATLGHEYCALTDH 137


>gi|238019358|ref|ZP_04599784.1| hypothetical protein VEIDISOL_01222 [Veillonella dispar ATCC 17748]
 gi|237864057|gb|EEP65347.1| hypothetical protein VEIDISOL_01222 [Veillonella dispar ATCC 17748]
          Length = 275

 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 46/160 (28%), Gaps = 42/160 (26%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AGIQP 69
            +HS YS  +G  S   +L      +   +A+TD + +   ++  + A         I+ 
Sbjct: 6   HMHSIYS--DGVKSPEELLRLALECKLSMMALTDHDEIDG-IKALRAAQKQLDPEKTIKI 62

Query: 70  IIGCQLDIDMQD--------NLKMTNQGKTPFPTVPSIVLLVS------------TAEGY 109
           I GC+   D +D            TNQ    F                          GY
Sbjct: 63  INGCEFSADYKDKSIHILGYRFDETNQELKDFIQYFK----AKREERIDEIIKRCNNAGY 118

Query: 110 QRLIELVS-----RMYLLDQGKQSVRICLSWLQEIGTEGL 144
                 +S     + +   Q      I    +     + +
Sbjct: 119 V-----ISKDDLLKKFPKTQAYGRPHIGQLLIDGGYAKDI 153


>gi|88859928|ref|ZP_01134567.1| hypothetical protein PTD2_17990 [Pseudoalteromonas tunicata D2]
 gi|88817922|gb|EAR27738.1| hypothetical protein PTD2_17990 [Pseudoalteromonas tunicata D2]
          Length = 282

 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L  H+ +S  +G+L+   ++D+    +   +AITD + 
Sbjct: 5  LHSHTLFS--DGSLTPEQLIDRAIEKKVDVLAITDHDT 40


>gi|260893320|ref|YP_003239417.1| PHP domain protein [Ammonifex degensii KC4]
 gi|260865461|gb|ACX52567.1| PHP domain protein [Ammonifex degensii KC4]
          Length = 273

 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L VH+  S  +GA +   ++ +  +     IA+TD + +
Sbjct: 7  LHVHTMAS--DGAETPAEVVARAKSIGLAGIAVTDHDTV 43


>gi|86606260|ref|YP_475023.1| phosphotransferase domain-containing protein [Synechococcus sp.
          JA-3-3Ab]
 gi|86554802|gb|ABC99760.1| PHP domain protein [Synechococcus sp. JA-3-3Ab]
          Length = 222

 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           +H+  S  +G +   ++ ++        +AITD + L    +  ++A A 
Sbjct: 37 HLHTCCS--DGRMDPADLAEQARRHGLKGLAITDHHTL----KGYEQAQAY 81


>gi|291566399|dbj|BAI88671.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 551

 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
           L ++ G+G   A+ I+EA + +PF SL+D  +RV    +  + +E 
Sbjct: 502 LESLPGIGPALAQRIIEARSQQPFTSLDD-VTRV--SGIGPKTIER 544


>gi|269138887|ref|YP_003295588.1| hypothetical protein ETAE_1536 [Edwardsiella tarda EIB202]
 gi|267984548|gb|ACY84377.1| hypothetical protein ETAE_1536 [Edwardsiella tarda EIB202]
 gi|304558873|gb|ADM41537.1| hypothetical protein ETAF_1425 [Edwardsiella tarda FL6-60]
          Length = 303

 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L  H+  S  +G LS   ++ +        +AITD + L
Sbjct: 16 LHSHTRAS--DGLLSPEALVARAVERSVTTLAITDHDTL 52


>gi|257469629|ref|ZP_05633721.1| HisJ family histidinol phosphate phosphatase [Fusobacterium
          ulcerans ATCC 49185]
 gi|317063865|ref|ZP_07928350.1| histidinol phosphate phosphatase HisJ family [Fusobacterium
          ulcerans ATCC 49185]
 gi|313689541|gb|EFS26376.1| histidinol phosphate phosphatase HisJ family [Fusobacterium
          ulcerans ATCC 49185]
          Length = 270

 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           VHS +S  +    +  I+ K  +     IA+TD 
Sbjct: 9  HVHSEFS-GDSTQDMEEIIQKAISLGLQEIALTDH 42


>gi|284051767|ref|ZP_06381977.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Arthrospira platensis str. Paraca]
          Length = 551

 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 51/133 (38%), Gaps = 4/133 (3%)

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
           ++    ++    +H+    ++      +  H+  EF        +     +     +  +
Sbjct: 416 VITGSHNWSRAANHSNDETLLVVNNPTVNAHFQREFERLYQNSSLGVPGWLLSRI-EREK 474

Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            N   +  +   P  +    +      L ++ G+G   A+ I+EA + +PF SL+D  +R
Sbjct: 475 QNCGGVIETPFHPSGEIININTASQPELESLPGIGPGLAQRIIEARSQQPFTSLDD-VTR 533

Query: 872 VDSKKLNRRVLES 884
           V    +  + +E 
Sbjct: 534 V--SGIGPKTIER 544


>gi|257886981|ref|ZP_05666634.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257823035|gb|EEV49967.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
          Length = 271

 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 10/67 (14%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS--ALE--FSQKACAAGIQP 69
          L VHS YS   G      +L      +   +AI D +      A++  F      + +  
Sbjct: 5  LHVHSCYS--NGFFHPKELLSLATTQEVNHLAIVDHHTFAGIEAVKEVFY----DSPVNL 58

Query: 70 IIGCQLD 76
          I G ++ 
Sbjct: 59 IEGIEIS 65


>gi|209525765|ref|ZP_03274301.1| helix-hairpin-helix motif [Arthrospira maxima CS-328]
 gi|209493738|gb|EDZ94057.1| helix-hairpin-helix motif [Arthrospira maxima CS-328]
          Length = 551

 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 51/133 (38%), Gaps = 4/133 (3%)

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
           ++    ++    +H+    ++      +  H+  EF        +     +     +  +
Sbjct: 416 VITGSHNWSRAANHSNDETLLVVNNPTVNAHFQREFERLYQNSSLGVPGWLLSRI-EREK 474

Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
            N   +  +   P  +    +      L ++ G+G   A+ I+EA + +PF SL+D  +R
Sbjct: 475 QNCGGVIETPFHPSGEIININTASQPELESLPGIGPGLAQRIIEARSQQPFTSLDD-VTR 533

Query: 872 VDSKKLNRRVLES 884
           V    +  + +E 
Sbjct: 534 V--SGIGPKTIER 544


>gi|261340038|ref|ZP_05967896.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Enterobacter cancerogenus ATCC 35316]
 gi|288317958|gb|EFC56896.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Enterobacter cancerogenus ATCC 35316]
          Length = 293

 Score = 47.5 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--ACA-AGIQPI 70
          L  H+  S  +G L+   ++ + A  +   +AITD +    A+  ++   A +   +  I
Sbjct: 12 LHSHTQAS--DGLLTPEALVHRAAEMRVGTLAITDHDTT-DAIPAARAEIARSGLALNLI 68

Query: 71 IGCQLDIDMQDN 82
           G ++    +++
Sbjct: 69 AGVEISTLWENH 80


>gi|291085289|ref|ZP_06352648.2| PHP domain protein [Citrobacter youngae ATCC 29220]
 gi|291071512|gb|EFE09621.1| PHP domain protein [Citrobacter youngae ATCC 29220]
          Length = 296

 Score = 47.5 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +         ++   +G  +  I 
Sbjct: 16 LHSHTTAS--DGRLTPEALVHRAVEMRVGTLAITDHDTTAGIAAAREEISRSGLALNLIS 73

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 74 GVEISTVWENH 84


>gi|320008718|gb|ADW03568.1| PHP domain protein [Streptomyces flavogriseus ATCC 33331]
          Length = 288

 Score = 47.5 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++   AA     +A+TD + +    E +  A   G+  + G 
Sbjct: 5  LHTHSTAS--DGTDTPAELVANAAAAGLDVVALTDHDTVGGHAEAA-AALPEGLTLVTGA 61

Query: 74 QLD 76
          +L 
Sbjct: 62 ELS 64


>gi|241764524|ref|ZP_04762544.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
 gi|241366060|gb|EER60664.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
          Length = 154

 Score = 47.5 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
           L  IKG+G   +  I+E   +  F    DF +RV
Sbjct: 31  LDGIKGIGPGISGKIVEERKNGSFKDWNDFITRV 64


>gi|327542194|gb|EGF28686.1| phosphotransferase domain-containing protein [Rhodopirellula
           baltica WH47]
          Length = 589

 Score = 47.5 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 5/44 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFS 54
           L +H+  S  +G  ++  + D         IAITD +    +  
Sbjct: 355 LHMHT--SATDGQNTIAEMADAAIERGLKYIAITDHSKRVTMAG 396


>gi|325959848|ref|YP_004291314.1| PHP domain-containing protein [Methanobacterium sp. AL-21]
 gi|325331280|gb|ADZ10342.1| PHP domain protein [Methanobacterium sp. AL-21]
          Length = 221

 Score = 47.5 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 15/97 (15%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT---------NNLFSALEFSQKACA 64
           L  HS +S  +G L  + I  +       A+AITD           N    ++       
Sbjct: 7   LHTHSIFS--DGELLPSEIARRALVLNHSAVAITDHVDASNIECVGN---VIKAVTDIRD 61

Query: 65  A-GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
              I+ I G ++     + +               +V
Sbjct: 62  NWDIEIIPGAEITHAPAEIIDKLAHEARKNGAEIVVV 98


>gi|121608595|ref|YP_996402.1| phosphotransferase domain-containing protein [Verminephrobacter
          eiseniae EF01-2]
 gi|121553235|gb|ABM57384.1| PHP C-terminal domain protein [Verminephrobacter eiseniae EF01-2]
          Length = 303

 Score = 47.5 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS  S  +G LS  ++  +  A+     A+TD +
Sbjct: 13 LHCHSVVS--DGTLSPEDLAARARANGVQLWALTDHD 47


>gi|256752810|ref|ZP_05493653.1| PHP domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748314|gb|EEU61375.1| PHP domain protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 247

 Score = 47.5 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 30/90 (33%), Gaps = 18/90 (20%)

Query: 1  LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSA-L 56
          + + +     +     H+ YS  +G   + + + +        IAITD       +    
Sbjct: 1  MIRQMRIFADY---HTHTVYSHGKGT--IEDNVKRAIEIGLEVIAITDHGPAHVFYGLRK 55

Query: 57 EFSQKACAA---------GIQPIIGCQLDI 77
             +K              I+ ++G + ++
Sbjct: 56 RDFKKMREEIDKINEKYPQIKVLMGVEANL 85


>gi|54026152|ref|YP_120394.1| hypothetical protein nfa41810 [Nocardia farcinica IFM 10152]
 gi|54017660|dbj|BAD59030.1| putative DNA polymerase [Nocardia farcinica IFM 10152]
          Length = 351

 Score = 47.5 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS++S  +G   +  ++   AA      A+TD 
Sbjct: 115 LHTHSNWS--DGGSPIEEMMRVAAALGHEYCALTDH 148


>gi|296159955|ref|ZP_06842775.1| helix-hairpin-helix motif protein [Burkholderia sp. Ch1-1]
 gi|295889701|gb|EFG69499.1| helix-hairpin-helix motif protein [Burkholderia sp. Ch1-1]
          Length = 121

 Score = 47.5 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  IKG+G   A+ I++   A  PF    D   RV  K +    +E L
Sbjct: 31  ALRGIKGIGPAKAKAILDERAAHGPFKDPADLGKRV--KGMGGHTVERL 77


>gi|284045752|ref|YP_003396092.1| PHP domain protein [Conexibacter woesei DSM 14684]
 gi|283949973|gb|ADB52717.1| PHP domain protein [Conexibacter woesei DSM 14684]
          Length = 393

 Score = 47.5 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
           VH+++S  +G  ++  +L         A+ +TD + L +
Sbjct: 15 HVHTTFS--DGTATVPELLAAARGSGADAVLLTDHDTLAA 52


>gi|91784804|ref|YP_560010.1| hypothetical protein Bxe_A0989 [Burkholderia xenovorans LB400]
 gi|91688758|gb|ABE31958.1| Putative exported protein [Burkholderia xenovorans LB400]
          Length = 121

 Score = 47.5 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  IKG+G   A+ I++   A  PF    D   RV  K +    +E L
Sbjct: 31  ALRGIKGIGPAKAKAILDERAAHGPFKDPADLGKRV--KGMGGHTVERL 77


>gi|89900706|ref|YP_523177.1| hypothetical protein Rfer_1920 [Rhodoferax ferrireducens T118]
 gi|89345443|gb|ABD69646.1| conserved hypothetical protein [Rhodoferax ferrireducens T118]
          Length = 183

 Score = 47.5 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSR---VDSKKLNRRVLESLVFAGA 890
           L  IKG+G  T + I+       F S +DF +R   V  K   +   E L  +GA
Sbjct: 48  LDGIKGIGPVTTKLIISERKKGEFKSWDDFVTRVKGVGDKNAAKFSAEGLTVSGA 102


>gi|182419048|ref|ZP_02950302.1| PHP domain protein [Clostridium butyricum 5521]
 gi|237669315|ref|ZP_04529297.1| PHP C- domain protein [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377003|gb|EDT74573.1| PHP domain protein [Clostridium butyricum 5521]
 gi|237655202|gb|EEP52760.1| PHP C- domain protein [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 230

 Score = 47.5 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 5/97 (5%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           + K   F    +HS+ S  +G  +   ++          I++TD N      E       
Sbjct: 1   MYKKGDF---HIHSTAS--DGNCTPKEVVSIAKKRNVDIISLTDHNTTQGLNEAISYGNN 55

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
            GI+ I G +L     +                 +++
Sbjct: 56  IGIKVIPGVELSTRYNNTRVHILGYFKDESYNDDLLI 92


>gi|126179709|ref|YP_001047674.1| phosphotransferase domain-containing protein [Methanoculleus
           marisnigri JR1]
 gi|125862503|gb|ABN57692.1| PHP C-terminal domain protein [Methanoculleus marisnigri JR1]
          Length = 576

 Score = 47.5 bits (111), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VH+ +S  EGA S+  +           +AI D 
Sbjct: 346 LHVHTRWS--EGAHSIEEMAKAARTLGYEYVAICDH 379


>gi|303244377|ref|ZP_07330713.1| PHP domain protein [Methanothermococcus okinawensis IH1]
 gi|302485272|gb|EFL48200.1| PHP domain protein [Methanothermococcus okinawensis IH1]
          Length = 296

 Score = 47.5 bits (111), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 15/93 (16%)

Query: 14 LQVHSSYSLLEGALS---------LNN---ILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          L +HS YS   G +          +     I+          IA+TD N +   LE  + 
Sbjct: 10 LHIHSKYS---GVMKYMGFKFPDSVEEPRNIMKYAKKKGLDVIAVTDHNTIKGGLETKKL 66

Query: 62 ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFP 94
              GI  ++G ++     + L +    + P  
Sbjct: 67 EKEFGIDVVVGSEIMTKDGEVLGLYLNEEIPKG 99


>gi|302671083|ref|YP_003831043.1| PHP domain-containing protein [Butyrivibrio proteoclasticus B316]
 gi|302395556|gb|ADL34461.1| PHP domain-containing protein [Butyrivibrio proteoclasticus B316]
          Length = 282

 Score = 47.5 bits (111), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L  HS+ S  +G  S+  ++D   A    AIA+TD + +
Sbjct: 6  LHTHSTCS--DGTYSVKELMDYAYAKGLAAIALTDHDTV 42


>gi|331662677|ref|ZP_08363600.1| protein TrpH [Escherichia coli TA143]
 gi|331061099|gb|EGI33063.1| protein TrpH [Escherichia coli TA143]
          Length = 293

 Score = 47.1 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAISPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|297172010|gb|ADI22994.1| DNA polymerase IV (family X) [uncultured Planctomycetales bacterium
           HF0500_40D21]
 gi|297183360|gb|ADI19495.1| DNA polymerase IV (family x) [uncultured Planctomycetales bacterium
           HF0500_40D21]
          Length = 583

 Score = 47.1 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 18/96 (18%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSALEFSQKACAA----- 65
           L +H+  +  +G  S+  ++    A ++  IAITD +    +   L+  ++  A      
Sbjct: 352 LHMHT--TATDGTASIEEMIAAAKARKRKYIAITDHSKRVTMAGGLDA-KRLRAHWKQID 408

Query: 66  -------GIQPIIGCQLDIDMQDNLKMTNQGKTPFP 94
                  GI+ + G + DI     L + +       
Sbjct: 409 KIRGSVSGIEVLCGIECDILEDATLDLPDDVLAEAD 444


>gi|91773173|ref|YP_565865.1| hypothetical protein Mbur_1192 [Methanococcoides burtonii DSM
          6242]
 gi|91712188|gb|ABE52115.1| Hypothetical protein with PHP domain [Methanococcoides burtonii
          DSM 6242]
          Length = 212

 Score = 47.1 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+ +S  +G L  + ++ +        I ITD 
Sbjct: 4  LHTHTIFS--DGELIPSELVRRAVTFGYRGIGITDH 37


>gi|195940874|ref|ZP_03086256.1| phosphotransferase domain-containing protein [Escherichia coli
          O157:H7 str. EC4024]
          Length = 293

 Score = 47.1 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H+  S  +G L+   ++ +    +   +AITD +          +   +G  +  + 
Sbjct: 12 LHSHTQAS--DGLLTPEALVHRAVEMRVGTLAITDHDTTDGIPAARAEIARSGLALNLVP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|167462818|ref|ZP_02327907.1| predicted metal-dependent phosphoesterase (PHP family) protein
          [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322384341|ref|ZP_08058039.1| hypothetical protein PL1_0900 [Paenibacillus larvae subsp. larvae
          B-3650]
 gi|321150843|gb|EFX44280.1| hypothetical protein PL1_0900 [Paenibacillus larvae subsp. larvae
          B-3650]
          Length = 280

 Score = 47.1 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 14 LQVHSSYSLL--EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
          L  HS    L  +G  +    +         A+AITD + +    E  ++    G Q + 
Sbjct: 8  LHTHS----LASDGTQTPGENVRMAWEIGLAAVAITDHDTVDGLEEAMEEGKRLGFQVVP 63

Query: 72 GCQLD 76
          G ++ 
Sbjct: 64 GVEIS 68


>gi|45357818|ref|NP_987375.1| isoleucyl-tRNA synthetase-like protein [Methanococcus maripaludis
          S2]
 gi|45047378|emb|CAF29811.1| isoleucyl-tRNA synthetase related [Methanococcus maripaludis S2]
          Length = 299

 Score = 47.1 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 15/73 (20%)

Query: 15 QVHSSYSLLEGALS---------LNN---ILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
           +H+ YS   G +          +     ++    A+    IA+TD N +  ALE  +  
Sbjct: 11 HIHTKYS---GMMKYMGLKFPDSVEEPLKVMKCAKANGMNIIAVTDHNTIKGALETKKYE 67

Query: 63 CAAGIQPIIGCQL 75
             GI+ ++G ++
Sbjct: 68 KEFGIEVVVGSEI 80


>gi|300915394|ref|ZP_07132708.1| PHP domain protein [Thermoanaerobacter sp. X561]
 gi|307724854|ref|YP_003904605.1| PHP domain-containing protein [Thermoanaerobacter sp. X513]
 gi|320115501|ref|YP_004185660.1| PHP domain-containing protein [Thermoanaerobacter brockii subsp.
          finnii Ako-1]
 gi|300888670|gb|EFK83818.1| PHP domain protein [Thermoanaerobacter sp. X561]
 gi|307581915|gb|ADN55314.1| PHP domain protein [Thermoanaerobacter sp. X513]
 gi|319928592|gb|ADV79277.1| PHP domain protein [Thermoanaerobacter brockii subsp. finnii
          Ako-1]
          Length = 247

 Score = 47.1 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 30/90 (33%), Gaps = 18/90 (20%)

Query: 1  LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSA-L 56
          + + +     +     H+ YS  +G   + + + +        IAITD       +    
Sbjct: 1  MIRQMRIFADY---HTHTVYSHGKGT--IEDNVKRAIEIGLEVIAITDHGPAHVFYGLRK 55

Query: 57 EFSQKACAA---------GIQPIIGCQLDI 77
             +K              I+ ++G + ++
Sbjct: 56 RDFKKMREEIDKINEKYPQIKVLMGVEANL 85


>gi|88603644|ref|YP_503822.1| PHP-like protein [Methanospirillum hungatei JF-1]
 gi|88189106|gb|ABD42103.1| PHP-like protein [Methanospirillum hungatei JF-1]
          Length = 221

 Score = 47.1 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 64/208 (30%), Gaps = 55/208 (26%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA--AGIQPII 71
           L +H+S S  +G  ++  ++          IAITD + +       + AC   A I  I 
Sbjct: 6   LHIHTSCS-KDGESTVAQVIAAAVTAGMDVIAITDHDTMDG----YRIACEISADILIIP 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G ++    + +L      K P P  P +                                
Sbjct: 61  GVEVS-TREGHLIALGVEKAPLPGFPIL-------------------------------- 87

Query: 132 CLSWLQE-IGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
               +QE     G+ +L           +            L   + FG    + +   R
Sbjct: 88  --DTIQEVRQAGGITILPHP-----FHRYRHG-------AALKCAEAFGAADAIEVYNSR 133

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSL 218
               +   + ++LA T   P VA +++ 
Sbjct: 134 YVIPHANHRAMRLARTMGKPAVAGSDAH 161


>gi|238788420|ref|ZP_04632213.1| hypothetical protein yfred0001_840 [Yersinia frederiksenii ATCC
           33641]
 gi|238723333|gb|EEQ14980.1| hypothetical protein yfred0001_840 [Yersinia frederiksenii ATCC
           33641]
          Length = 314

 Score = 47.1 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H++ S  +G+L+   ++ + A  +   +AITD +      E +         ++ I 
Sbjct: 34  LHSHTTAS--DGSLTPAALVIRAAQMRVGVLAITDHDTTAGLAEAAATIAQQQLALRLIP 91

Query: 72  GCQLDIDMQDN 82
           G ++    +++
Sbjct: 92  GVEISTLWENH 102


>gi|77918819|ref|YP_356634.1| hypothetical protein Pcar_1215 [Pelobacter carbinolicus DSM 2380]
 gi|77544902|gb|ABA88464.1| histidinol phosphatase/PHP family hydrolase [Pelobacter
          carbinolicus DSM 2380]
          Length = 217

 Score = 47.1 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  H+ +S  +G L    +  + A     AI ITD  
Sbjct: 4  LHTHTVFS--DGELIPAELTRRAAVAGYRAIGITDHG 38


>gi|288573310|ref|ZP_06391667.1| metal dependent phosphohydrolase [Dethiosulfovibrio peptidovorans DSM
            11002]
 gi|288569051|gb|EFC90608.1| metal dependent phosphohydrolase [Dethiosulfovibrio peptidovorans DSM
            11002]
          Length = 350

 Score = 47.1 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 18/52 (34%)

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            K  E+      G       +V+   +KK + G     V+  +     +A  +
Sbjct: 6    KSVEDVKNLPVGEKFSSVGVVLDIHEKKDKNGKSYWTVSLMDKTGSMDAKIW 57


>gi|126459054|ref|YP_001055332.1| putative nucleotide binding protein [Pyrobaculum calidifontis JCM
           11548]
 gi|126248775|gb|ABO07866.1| putative nucleotide binding protein [Pyrobaculum calidifontis JCM
           11548]
          Length = 194

 Score = 47.1 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
           SL  ++GVG    + I+E    KPF S ED   RV    +
Sbjct: 126 SLELLRGVGKKKVQEILEERKKKPFTSYEDVKQRVGIDLV 165


>gi|110641495|ref|YP_669225.1| phosphotransferase domain-containing protein [Escherichia coli
          536]
 gi|191171062|ref|ZP_03032613.1| putative phosphoesterase [Escherichia coli F11]
 gi|218689256|ref|YP_002397468.1| hypothetical protein ECED1_1472 [Escherichia coli ED1a]
 gi|218704789|ref|YP_002412308.1| hypothetical protein ECUMN_1564 [Escherichia coli UMN026]
 gi|293404807|ref|ZP_06648799.1| metal-dependent phosphoesterase [Escherichia coli FVEC1412]
 gi|293409650|ref|ZP_06653226.1| trpH [Escherichia coli B354]
 gi|298380448|ref|ZP_06990047.1| trpH [Escherichia coli FVEC1302]
 gi|331682751|ref|ZP_08383370.1| protein TrpH [Escherichia coli H299]
 gi|110343087|gb|ABG69324.1| PHP domain containing protein (TRPH) [Escherichia coli 536]
 gi|190908794|gb|EDV68382.1| putative phosphoesterase [Escherichia coli F11]
 gi|218426820|emb|CAR07670.2| conserved hypothetical protein [Escherichia coli ED1a]
 gi|218431886|emb|CAR12771.1| conserved hypothetical protein [Escherichia coli UMN026]
 gi|291427015|gb|EFF00042.1| metal-dependent phosphoesterase [Escherichia coli FVEC1412]
 gi|291470118|gb|EFF12602.1| trpH [Escherichia coli B354]
 gi|298277890|gb|EFI19404.1| trpH [Escherichia coli FVEC1302]
 gi|331080382|gb|EGI51561.1| protein TrpH [Escherichia coli H299]
          Length = 293

 Score = 47.1 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTAAISPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|115350984|ref|YP_772823.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Burkholderia ambifaria AMMD]
 gi|115280972|gb|ABI86489.1| helix-hairpin-helix motif protein [Burkholderia ambifaria AMMD]
          Length = 114

 Score = 47.1 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  IKG+G   A+ I++   A  PF + ED  SRV  K +    +E L
Sbjct: 31  ALVGIKGIGPARAKAILDERGAHGPFRNAEDLASRV--KGMGGHTVERL 77


>gi|297192244|ref|ZP_06909642.1| PHP domain-containing protein [Streptomyces pristinaespiralis
          ATCC 25486]
 gi|197719778|gb|EDY63686.1| PHP domain-containing protein [Streptomyces pristinaespiralis
          ATCC 25486]
          Length = 287

 Score = 47.1 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L  HS+ S  +G  +   ++   AA     +A+TD + 
Sbjct: 5  LHTHSTAS--DGTDTPAELVRHAAAAGLDVVALTDHDT 40


>gi|315230156|ref|YP_004070592.1| RNA-binding protein [Thermococcus barophilus MP]
 gi|315183184|gb|ADT83369.1| RNA-binding protein [Thermococcus barophilus MP]
          Length = 207

 Score = 47.1 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 64/212 (30%), Gaps = 31/212 (14%)

Query: 720 KIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWM 779
           +    M   K++  +   +           +  +  F     NK  A      ++    +
Sbjct: 5   RKHSYMQSIKKKRNTEYEEYAYVLDYLPTGYIDMEHFRMKRDNKPVAQVIGEKAFTLLEV 64

Query: 780 KTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNR---IY 836
                +              +KI    +  R  ++     +     V+  V +N    I 
Sbjct: 65  VPKADLMLYERVFIG-KGQRDKILMINRKLRYEDLTPTAKAELPYVVEEIVKNNEHRFIR 123

Query: 837 Y------------SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV-----DSKKLNR 879
           +            SL  + G+G      I+E    +PF+S ED   RV       K + +
Sbjct: 124 FFNIAPPITNRLHSLELLPGIGKKHMWEIIEERQRQPFESFEDLRHRVKGLPDPVKMIAK 183

Query: 880 RVLESLVFAGALDCF-GYSRMQLLQSLDNIQK 910
           R+L         D   G  R +L    + + +
Sbjct: 184 RIL---------DELQGKDRYRLFVGHNRLFR 206


>gi|188586429|ref|YP_001917974.1| PHP domain protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351116|gb|ACB85386.1| PHP domain protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 571

 Score = 47.1 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H++++  +GA  L +++D         IAITD 
Sbjct: 341 LHIHTNWT--DGAGDLQDMVDGAKNMGYEYIAITDH 374


>gi|46199091|ref|YP_004758.1| DNA-dependent DNA polymerase beta chain [Thermus thermophilus HB27]
 gi|46196715|gb|AAS81131.1| DNA-dependent DNA polymerase beta chain [Thermus thermophilus HB27]
          Length = 575

 Score = 47.1 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           LQVHS+YS  +G  +L  + +         +A+TD 
Sbjct: 341 LQVHSTYS--DGQNTLEELWEAAKTMGYRYLAVTDH 374


>gi|55981119|ref|YP_144416.1| DNA polymerase beta family protein [Thermus thermophilus HB8]
 gi|55772532|dbj|BAD70973.1| DNA polymerase beta family (X family) [Thermus thermophilus HB8]
          Length = 575

 Score = 47.1 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           LQVHS+YS  +G  +L  + +         +A+TD 
Sbjct: 341 LQVHSTYS--DGQNTLEELWEAAKTMGYRYLAVTDH 374


>gi|257061013|ref|YP_003138901.1| hypothetical protein Cyan8802_3228 [Cyanothece sp. PCC 8802]
 gi|256591179|gb|ACV02066.1| helix-hairpin-helix motif protein [Cyanothece sp. PCC 8802]
          Length = 545

 Score = 47.1 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 47/130 (36%)

Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             K   ++   ++    ++    +H     ++  +   +  HY  EF     T ++   +
Sbjct: 398 HHKMAVIDQTIVITGSHNWSEAANHQNDETLLIIENPTIAAHYQREFDRLYSTAQLGLPD 457

Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
            ++K  Q              +    +    +      L ++ G+G  TA+ I+E    K
Sbjct: 458 FVQKKIQKDTDNCPTFSTRKSSRHTDEIINLNTATQAELESLPGIGEKTAQKIIEERQKK 517

Query: 861 PFDSLEDFCS 870
           PF SL+D   
Sbjct: 518 PFTSLDDLTR 527


>gi|218247652|ref|YP_002373023.1| helix-hairpin-helix motif protein [Cyanothece sp. PCC 8801]
 gi|218168130|gb|ACK66867.1| helix-hairpin-helix motif protein [Cyanothece sp. PCC 8801]
          Length = 545

 Score = 47.1 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 47/130 (36%)

Query: 741 ISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVE 800
             K   ++   ++    ++    +H     ++  +   +  HY  EF     T ++   +
Sbjct: 398 HHKMAVIDQTIVITGSHNWSEAANHQNDETLLIIENPTIAAHYQREFDRLYSTAQLGLPD 457

Query: 801 KIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADK 860
            ++K  Q              +    +    +      L ++ G+G  TA+ I+E    K
Sbjct: 458 FVQKKIQKDTDNCPTFSTRKSSRHTDEIINLNTATQAELESLPGIGEKTAQKIIEERQKK 517

Query: 861 PFDSLEDFCS 870
           PF SL+D   
Sbjct: 518 PFTSLDDLTR 527


>gi|251778017|ref|ZP_04820937.1| PHP domain protein [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
 gi|243082332|gb|EES48222.1| PHP domain protein [Clostridium botulinum E1 str. 'BoNT E
          Beluga']
          Length = 231

 Score = 47.1 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          + K   F    +HS+ S  +G  +   +++         I++TD NN     E   +   
Sbjct: 1  MYKKGDF---HIHSTSS--DGGYTPKQVVNFAKKRGVDIISLTDHNNTCGIDESILEGER 55

Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTV 96
           G++ I G +L    ++  ++   G     + 
Sbjct: 56 IGVKVIPGVELSTKHKNGSRVHILGYFKDESY 87


>gi|255659413|ref|ZP_05404822.1| putative PHP domain protein [Mitsuokella multacida DSM 20544]
 gi|260848375|gb|EEX68382.1| putative PHP domain protein [Mitsuokella multacida DSM 20544]
          Length = 299

 Score = 47.1 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 14 LQVHSSYSLL-EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          L VH   SL+ +G+ + +++          A A+TD +N+    E +  A   GI  I G
Sbjct: 6  LHVH---SLVSDGSYTPHDLARHAREVGLSAFALTDHDNIAGNEEAAAAAKEQGIDFING 62

Query: 73 CQLDIDMQDN 82
           +L  D    
Sbjct: 63 MELTADFMGR 72


>gi|188589165|ref|YP_001921428.1| PHP domain protein [Clostridium botulinum E3 str. Alaska E43]
 gi|188499446|gb|ACD52582.1| PHP domain protein [Clostridium botulinum E3 str. Alaska E43]
          Length = 231

 Score = 47.1 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          + K   F    +HS+ S  +G  +   +++         I++TD NN     E   +   
Sbjct: 1  MYKKGDF---HIHSTSS--DGGYTPKQVVNFAKKRGVDIISLTDHNNTCGIDESILEGER 55

Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTV 96
           G++ I G +L    ++  ++   G     + 
Sbjct: 56 IGVKVIPGVELSTKHKNGSRVHILGYFKDESY 87


>gi|153954165|ref|YP_001394930.1| hydrolase [Clostridium kluyveri DSM 555]
 gi|146347046|gb|EDK33582.1| Predicted hydrolase [Clostridium kluyveri DSM 555]
          Length = 282

 Score = 47.1 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 5/72 (6%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          + K   F HL      +  +G LS   I+          IAITD + +        +   
Sbjct: 1  MYKKGDF-HLHT----TASDGKLSPAEIVTNSKKAGLDIIAITDHDTISGIDSALYQGEK 55

Query: 65 AGIQPIIGCQLD 76
            I+ I G +L 
Sbjct: 56 VNIKVIPGLELS 67


>gi|297544639|ref|YP_003676941.1| PHP domain protein [Thermoanaerobacter mathranii subsp. mathranii
          str. A3]
 gi|296842414|gb|ADH60930.1| PHP domain protein [Thermoanaerobacter mathranii subsp. mathranii
          str. A3]
          Length = 278

 Score = 47.1 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC----AAG 66
          F  L +HS  S  +G    + ++          I++TD +     ++  ++A        
Sbjct: 2  FADLHMHSKAS--DGTNLPSEVVRLAKEHGLSCISLTDHDT----IDGLEEAVWISFKYE 55

Query: 67 IQPIIGCQLDIDMQD 81
          I+ I G + +   Q+
Sbjct: 56 IEVIPGIEFNCYYQN 70


>gi|288573328|ref|ZP_06391685.1| PHP domain protein [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569069|gb|EFC90626.1| PHP domain protein [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 246

 Score = 47.1 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 26/101 (25%)

Query: 14  LQVHSSYSL---LE-GALSLNNILDKIAADQQPAIAITDTNN------LFSALEFSQKAC 63
           L +H+  S    LE GA     I+ +        +A+TD N+      L  A      A 
Sbjct: 8   LHLHTVLSPCGELEMGA---PEIVSRAVEQGIDLLAVTDHNSCLNYPALAGA------AE 58

Query: 64  AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS 104
              I+ I G ++      ++               + LL  
Sbjct: 59  GQPIRIIPGMEIQSAEDVHVVALFGD-------YELALLCQ 92


>gi|152982284|ref|YP_001354354.1| hypothetical protein mma_2664 [Janthinobacterium sp. Marseille]
 gi|151282361|gb|ABR90771.1| Hypothetical protein mma_2664 [Janthinobacterium sp. Marseille]
          Length = 113

 Score = 47.1 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L  IKGVG   ++ I++       F   +D   RV  K +  +  E L  AG
Sbjct: 32  ALDGIKGVGPAMSKAILDERKKGGNFKDWDDLQKRV--KGVGEKNSEKLSEAG 82


>gi|33592113|ref|NP_879757.1| hypothetical protein BP0956 [Bordetella pertussis Tohama I]
 gi|33571757|emb|CAE41258.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
          Length = 162

 Score = 47.1 bits (110), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           L  ++GVG  TAR I+E       F SLED   RV    +  + ++SL  AG
Sbjct: 83  LETVRGVGPRTARVIIEERQRGGRFLSLEDLSERV--SGIGHKKMQSLQAAG 132


>gi|163856206|ref|YP_001630504.1| hypothetical protein Bpet1896 [Bordetella petrii DSM 12804]
 gi|163259934|emb|CAP42235.1| conserved hypothetical protein [Bordetella petrii]
          Length = 159

 Score = 47.1 bits (110), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           L A+ GVG  TA+ I++      PF+SL+D   RV  + +  + L SL  AG
Sbjct: 80  LEALHGVGPRTAQIIVQERERAGPFESLQDLSDRV--RGIGPKRLGSLQAAG 129


>gi|88798245|ref|ZP_01113831.1| predicted metal-dependent phosphoesterase (PHP family) protein
          [Reinekea sp. MED297]
 gi|88779021|gb|EAR10210.1| predicted metal-dependent phosphoesterase (PHP family) protein
          [Reinekea sp. MED297]
          Length = 303

 Score = 47.1 bits (110), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 7/62 (11%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            HS +S  +G LS   +L +  A     +A+TD +         + A    + P  G  
Sbjct: 12 HCHSRFS--DGRLSPEALLAEAQAKGVEHLALTDHDT----ARGYRYAVDQQLVP-PGLT 64

Query: 75 LD 76
          L 
Sbjct: 65 LY 66


>gi|317121907|ref|YP_004101910.1| PHP domain protein [Thermaerobacter marianensis DSM 12885]
 gi|315591887|gb|ADU51183.1| PHP domain protein [Thermaerobacter marianensis DSM 12885]
          Length = 281

 Score = 47.1 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H++ S  +G ++    +    A     + ITD + L       + A AAGI  + G 
Sbjct: 7  LHTHTTAS--DGTVTPEERIRMAVAAGLEWVGITDHDTLAGLPAAREAARAAGIGLVPGV 64

Query: 74 QLDIDMQDNLKM 85
          +L  D+    + 
Sbjct: 65 ELSTDVDLGTRR 76


>gi|116754302|ref|YP_843420.1| hypothetical protein Mthe_0995 [Methanosaeta thermophila PT]
 gi|116665753|gb|ABK14780.1| Protein of unknown function DUF655 [Methanosaeta thermophila PT]
          Length = 201

 Score = 47.1 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV-----DSKKLNRRVLESL 885
            L  + G+G      I+      PF S +D   RV       K + +R+ E L
Sbjct: 123 GLELLPGIGKKLMWAILNERKKGPFRSFKDLSERVKGLHNPEKLIAKRIEEEL 175


>gi|172037262|ref|YP_001803763.1| hypothetical protein cce_2347 [Cyanothece sp. ATCC 51142]
 gi|171698716|gb|ACB51697.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 230

 Score = 47.1 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 13/60 (21%)

Query: 14 LQVHS---SYSLL------EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          L  HS    Y+        +G L+   ++ +        +AITD ++    +E  + A  
Sbjct: 24 LNTHSCPYEYNFHMHTICSDGQLTPEQLIQQATRIGLKGLAITDHHS----VEGYKIAQK 79


>gi|319651780|ref|ZP_08005906.1| hypothetical protein HMPREF1013_02518 [Bacillus sp. 2_A_57_CT2]
 gi|317396599|gb|EFV77311.1| hypothetical protein HMPREF1013_02518 [Bacillus sp. 2_A_57_CT2]
          Length = 572

 Score = 47.1 bits (110), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  +++   A     +AITD 
Sbjct: 340 LHMHSTWS--DGAYSIEEMIEACRARGYKYMAITDH 373


>gi|282897548|ref|ZP_06305548.1| PHP-like protein [Raphidiopsis brookii D9]
 gi|281197471|gb|EFA72367.1| PHP-like protein [Raphidiopsis brookii D9]
          Length = 228

 Score = 46.7 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
            H+ +S  +G L  + ++++        +AITD ++    +E  +KA 
Sbjct: 34 HAHTVFS--DGKLHPHILMEQAITIGLKGLAITDHHS----VEGYEKAK 76


>gi|332178641|gb|AEE14330.1| PHP domain protein [Thermodesulfobium narugense DSM 14796]
          Length = 573

 Score = 46.7 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
           L VH++YS  +G  S+  ++D   +     I +TD + 
Sbjct: 328 LHVHTNYS--DGTHSIEELVDFYMSKGFQYIVLTDHSV 363


>gi|94264293|ref|ZP_01288086.1| PHP-like [delta proteobacterium MLMS-1]
 gi|93455259|gb|EAT05469.1| PHP-like [delta proteobacterium MLMS-1]
          Length = 218

 Score = 46.7 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS +S  +GAL     L ++      A+AITD 
Sbjct: 4  LHTHSLFS--DGALVPAEHLRRVEILGYQAVAITDH 37


>gi|294495190|ref|YP_003541683.1| PHP domain protein [Methanohalophilus mahii DSM 5219]
 gi|292666189|gb|ADE36038.1| PHP domain protein [Methanohalophilus mahii DSM 5219]
          Length = 211

 Score = 46.7 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+ +S  +G L  +  + +       AI +TD 
Sbjct: 4  LHTHTIFS--DGELIPSEQVRRAKTLGYEAIGLTDH 37


>gi|148643435|ref|YP_001273948.1| RNA-binding protein [Methanobrevibacter smithii ATCC 35061]
 gi|222445677|ref|ZP_03608192.1| hypothetical protein METSMIALI_01318 [Methanobrevibacter smithii
           DSM 2375]
 gi|261349775|ref|ZP_05975192.1| DNA-binding protein [Methanobrevibacter smithii DSM 2374]
 gi|148552452|gb|ABQ87580.1| predicted RNA-binding protein [Methanobrevibacter smithii ATCC
           35061]
 gi|222435242|gb|EEE42407.1| hypothetical protein METSMIALI_01318 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860559|gb|EFC92857.1| DNA-binding protein [Methanobrevibacter smithii DSM 2374]
          Length = 218

 Score = 46.7 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
           L  I G+G      I+EA  +KPF+S ED   R+ S
Sbjct: 131 LELIPGIGKKYMWEIVEARKEKPFESFEDITKRIPS 166


>gi|319942357|ref|ZP_08016671.1| hypothetical protein HMPREF9464_01890 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804045|gb|EFW00953.1| hypothetical protein HMPREF9464_01890 [Sutterella wadsworthensis
           3_1_45B]
          Length = 332

 Score = 46.7 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS+ S  +G L    ++   A +    +++TD + +    E   +A   GI  + G 
Sbjct: 51  LHMHSNAS--DGILPPAEVVRLCAGNGVKLMSLTDHDTMKGIEEARAEAERLGIAFVPGI 108

Query: 74  QLD 76
           ++ 
Sbjct: 109 EIS 111


>gi|145345363|ref|XP_001417183.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577410|gb|ABO95476.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 137

 Score = 46.7 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 981  KGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                E+ A+     + +   VV K+++K  K       T  + +   E   +
Sbjct: 13   TKASETKASFVARRVEVCGFVVEKRRRKDSK----VIFTVDDGSGCVECVVW 60


>gi|302344089|ref|YP_003808618.1| PHP domain protein [Desulfarculus baarsii DSM 2075]
 gi|301640702|gb|ADK86024.1| PHP domain protein [Desulfarculus baarsii DSM 2075]
          Length = 219

 Score = 46.7 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+ +S  +GAL    ++ +  A    A+AITD 
Sbjct: 4  LHNHTLFS--DGALVPAELIQRHHALGNRAVAITDH 37


>gi|312622983|ref|YP_004024596.1| hypothetical protein Calkro_1933 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203450|gb|ADQ46777.1| hypothetical protein Calkro_1933 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 433

 Score = 46.7 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 4/89 (4%)

Query: 15  QVHSSYSLL-EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            +H+ YS            +   A    P   I D + +  + EF      AGI   IG 
Sbjct: 48  HIHTFYSFSPYSPSKA---IYMAAKSGLPTAGIMDHDTIAGSEEFISAGKIAGIATTIGV 104

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           +   D    L    +   P     + V +
Sbjct: 105 ECRADFSKTLLSGKKINNPDQHSIAYVAI 133


>gi|257387176|ref|YP_003176949.1| PHP domain protein [Halomicrobium mukohataei DSM 12286]
 gi|257169483|gb|ACV47242.1| PHP domain protein [Halomicrobium mukohataei DSM 12286]
          Length = 261

 Score = 46.7 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L VH+  S  +G LSL+ +          A+A+TD + L   L+        GI  + G 
Sbjct: 6  LHVHTQRS--DGTLSLDEVPAAARRGGLDAVAVTDHDRLSPDLDAPVTTRE-GITVVHGI 62

Query: 74 QLDIDMQ 80
          +L ++  
Sbjct: 63 ELRVEAG 69


>gi|218516210|ref|ZP_03513050.1| DNA polymerase III protein, alpha subunit [Rhizobium etli 8C-3]
          Length = 37

 Score = 46.7 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 8/33 (24%), Positives = 18/33 (54%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIA 37
          ++   +F  +   +++S LEGA S   ++ + A
Sbjct: 1  MKGERAFFEIGARTNFSFLEGASSPEEMVLQAA 33


>gi|184200489|ref|YP_001854696.1| hypothetical protein KRH_08430 [Kocuria rhizophila DC2201]
 gi|183580719|dbj|BAG29190.1| hypothetical protein [Kocuria rhizophila DC2201]
          Length = 283

 Score = 46.7 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 2/87 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S  +G  +  ++     A      A+TD +      E    A + G+  + G 
Sbjct: 5   LHTHSIAS--DGTETPADVARSAHAAGLSVFALTDHDTTAGWQEAGDTAVSLGVAFVPGM 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           ++     D + +        P    +V
Sbjct: 63  EITCTTADGISVHMLSYLHDPAYQPLV 89


>gi|114794742|pdb|2I5H|A Chain A, Crystal Structure Of Af1531 From Archaeoglobus Fulgidus,
           Pfam Duf655
          Length = 205

 Score = 46.7 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
           L  + GVG      I+E    +PF+S ED   RV  K + R   E L+
Sbjct: 134 LELLPGVGKKMMWAIIEERKKRPFESFEDIAQRV--KGIQRP--EKLI 177


>gi|170768075|ref|ZP_02902528.1| putative phosphoesterase [Escherichia albertii TW07627]
 gi|170122841|gb|EDS91772.1| putative phosphoesterase [Escherichia albertii TW07627]
          Length = 293

 Score = 46.7 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G+L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGSLTAEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|238757069|ref|ZP_04618257.1| hypothetical protein yaldo0001_17240 [Yersinia aldovae ATCC
          35236]
 gi|238704899|gb|EEP97428.1| hypothetical protein yaldo0001_17240 [Yersinia aldovae ATCC
          35236]
          Length = 314

 Score = 46.7 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G+L+ + ++ + A+ +   +AITD +      E +         +Q I 
Sbjct: 28 LHSHTTAS--DGSLAPSALVLRAASMRVGVLAITDHDTTAGLAEAAATIEQHQLPLQLIS 85

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 86 GVEISTLWENH 96


>gi|225019133|ref|ZP_03708325.1| hypothetical protein CLOSTMETH_03085 [Clostridium methylpentosum
           DSM 5476]
 gi|224948106|gb|EEG29315.1| hypothetical protein CLOSTMETH_03085 [Clostridium methylpentosum
           DSM 5476]
          Length = 294

 Score = 46.7 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 3/95 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  H+  +L +G+  +  ++          +AITD ++  S           G+  I G 
Sbjct: 23  LHCHT--TLSDGSAGIGEVIANAKLVGVDFLAITDHDSTSSFNRARVIGERYGVHIIEGV 80

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLV-STAE 107
           +L    Q   +  +           ++ +     E
Sbjct: 81  ELSAFDQKRGRRVHILCYRPLKPDRLLGICTRNTE 115


>gi|222478877|ref|YP_002565114.1| PHP domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222451779|gb|ACM56044.1| PHP domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 605

 Score = 46.7 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H+ +S  +G  S+  +++  A     A A+TD 
Sbjct: 352 LHTHTDWS--DGGFSIAEMIEAAAERGYDAHAVTDH 385


>gi|15921506|ref|NP_377175.1| hypothetical protein ST1243 [Sulfolobus tokodaii str. 7]
 gi|15622292|dbj|BAB66284.1| 220aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 220

 Score = 46.7 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 18/95 (18%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI----QPI 70
            VH+ YS  +G  S   +L+         IAITD +              A I    + +
Sbjct: 7   HVHTYYS--DGKESPKEMLNYALKVGLNGIAITDHDT-----------SKAHITFKNKFV 53

Query: 71  I-GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS 104
           I G ++  +    + + N   +P   +  ++    
Sbjct: 54  IPGQEVTTEFGHVVILCNFPPSPPRKISELIDYAK 88


>gi|119775263|ref|YP_928003.1| PHP-like protein [Shewanella amazonensis SB2B]
 gi|119767763|gb|ABM00334.1| PHP-like protein [Shewanella amazonensis SB2B]
          Length = 286

 Score = 46.7 bits (109), Expect = 0.021,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
          L  H++ S  +G LS ++++ +        +AITD + L    E  
Sbjct: 10 LHCHTTAS--DGQLSPSDVVTRAIERGVNLLAITDHDTLDGLEEAH 53


>gi|326334206|ref|ZP_08200429.1| PHP domain protein [Nocardioidaceae bacterium Broad-1]
 gi|325947997|gb|EGD40114.1| PHP domain protein [Nocardioidaceae bacterium Broad-1]
          Length = 291

 Score = 46.7 bits (109), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 2/38 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L  HS  S  +G  S   ++    A     +AITD + 
Sbjct: 5  LHTHSRVS--DGTDSPTELIQAAKAAGLDVVAITDHDT 40


>gi|167948890|ref|ZP_02535964.1| hypothetical protein Epers_21202 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 77

 Score = 46.7 bits (109), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 156 DRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
            RA    +   AE+ L  + +LFGDR Y+ L R R
Sbjct: 3   GRALLAGNQAAAERLLAGWLELFGDRFYLELNRTR 37


>gi|11499126|ref|NP_070360.1| hypothetical protein AF1531 [Archaeoglobus fulgidus DSM 4304]
 gi|2649033|gb|AAB89717.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 195

 Score = 46.7 bits (109), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
           L  + GVG      I+E    +PF+S ED   RV  K + R   E L+
Sbjct: 132 LELLPGVGKKMMWAIIEERKKRPFESFEDIAQRV--KGIQRP--EKLI 175


>gi|271500651|ref|YP_003333676.1| PHP domain-containing protein [Dickeya dadantii Ech586]
 gi|270344206|gb|ACZ76971.1| PHP domain protein [Dickeya dadantii Ech586]
          Length = 290

 Score = 46.7 bits (109), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 1  LTQYLEKSPSFVHL-QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          +   L  SP+F  L  +HS  +  +G L+   ++ +  + +   +AITD + 
Sbjct: 1  MPDELPASPAF-PLYDLHSHTTASDGLLTPAELVQRAVSMRVSVLAITDHDT 51


>gi|88808544|ref|ZP_01124054.1| hypothetical protein WH7805_02602 [Synechococcus sp. WH 7805]
 gi|88787532|gb|EAR18689.1| hypothetical protein WH7805_02602 [Synechococcus sp. WH 7805]
          Length = 218

 Score = 46.7 bits (109), Expect = 0.022,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
            H+  S  +G+L   +++ + ++     +A+TD ++
Sbjct: 27 HCHTICS--DGSLRPEDLIQQASSHGLRHLAVTDHHS 61


>gi|110669006|ref|YP_658817.1| hypothetical protein HQ3120A [Haloquadratum walsbyi DSM 16790]
 gi|109626753|emb|CAJ53220.1| conserved hypothetical protein [Haloquadratum walsbyi DSM 16790]
          Length = 258

 Score = 46.7 bits (109), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 11/72 (15%)

Query: 15 QVHSSYSLLEGAL----SLNNIL-DKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           VHS+      A         +L ++ A     AI +TD + L  +L  +  A   G+  
Sbjct: 10 HVHSA------ASYDADDPAELLLEQAAEIGLDAIVVTDHDVLHESLRAADLAPRYGLIG 63

Query: 70 IIGCQLDIDMQD 81
          I G ++      
Sbjct: 64 IPGVEVSTADGH 75


>gi|86609265|ref|YP_478027.1| phosphotransferase domain-containing protein [Synechococcus sp.
          JA-2-3B'a(2-13)]
 gi|86557807|gb|ABD02764.1| PHP domain protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 222

 Score = 46.7 bits (109), Expect = 0.022,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 10/54 (18%)

Query: 13 HLQVH-SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
          HL    S     +G +   ++ ++        +AITD + L    +  ++A A 
Sbjct: 37 HLHTRCS-----DGQMDPVDLAEQARRHGLKGLAITDHHTL----KGYERARAH 81


>gi|312128177|ref|YP_003993051.1| hypothetical protein Calhy_1972 [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778196|gb|ADQ07682.1| conserved hypothetical protein [Caldicellulosiruptor hydrothermalis
           108]
          Length = 433

 Score = 46.7 bits (109), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 2/88 (2%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +H+ YS      S +  +   A    P   I D + +  + EF      AGI   IG +
Sbjct: 48  HIHTFYSF--SPYSPSKAIYMAAKSGLPTAGIMDHDTIAGSEEFISAGKIAGIATTIGVE 105

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
              D    L    +   P     + V +
Sbjct: 106 CRADFSKTLLSGKKINNPDQHSIAYVAI 133


>gi|223984227|ref|ZP_03634374.1| hypothetical protein HOLDEFILI_01667 [Holdemania filiformis DSM
          12042]
 gi|223963796|gb|EEF68161.1| hypothetical protein HOLDEFILI_01667 [Holdemania filiformis DSM
          12042]
          Length = 270

 Score = 46.7 bits (109), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          +  L +HS YS  +  ++++ I+++        IA+TD N L  + E  QK    GI+ +
Sbjct: 2  YADLHIHSWYS--DRTMTVDEIVEQARVRHVSLIAVTDHNQLAGSRECLQKTRGTGIRCL 59

Query: 71 IGCQLD 76
           G +LD
Sbjct: 60 SGVELD 65


>gi|262199755|ref|YP_003270964.1| DNA-directed DNA polymerase [Haliangium ochraceum DSM 14365]
 gi|262083102|gb|ACY19071.1| DNA-directed DNA polymerase [Haliangium ochraceum DSM 14365]
          Length = 586

 Score = 46.7 bits (109), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 18/96 (18%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN-----NLFSALEFSQKACAA--- 65
           L VH++ S  +G   L +I++  +      +AITD       N         ++      
Sbjct: 352 LHVHTALS-GDGRSPLGDIVEAASGRGYGYLAITDHGEDLAIN--GVTRAQLRSQREELD 408

Query: 66  -------GIQPIIGCQLDIDMQDNLKMTNQGKTPFP 94
                   ++ + GC+L+I  +  L      +    
Sbjct: 409 RLGERYPDMRLLQGCELNIGPEGGLDYDLDFRMQLD 444


>gi|114562607|ref|YP_750120.1| phosphotransferase domain-containing protein [Shewanella
          frigidimarina NCIMB 400]
 gi|114333900|gb|ABI71282.1| PHP C-terminal domain protein [Shewanella frigidimarina NCIMB
          400]
          Length = 286

 Score = 46.7 bits (109), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII-- 71
          L  H++ S  +G L+   +L +         AITD + +    E            ++  
Sbjct: 10 LHSHTTAS--DGQLTPTELLTRAIEKGVEMFAITDHDTVGGLAEAHLANQNHATPLLLIN 67

Query: 72 GCQLD 76
          GC++ 
Sbjct: 68 GCEIS 72


>gi|282162751|ref|YP_003355136.1| family X DNA polymerase [Methanocella paludicola SANAE]
 gi|282155065|dbj|BAI60153.1| family X DNA polymerase [Methanocella paludicola SANAE]
          Length = 568

 Score = 46.3 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS +S  +GA ++ +I     A     +AI D 
Sbjct: 336 LHVHSDWS--DGANTIQDIAIAARAMGYEYVAICDH 369


>gi|119872094|ref|YP_930101.1| putative nucleotide binding protein [Pyrobaculum islandicum DSM
           4184]
 gi|119673502|gb|ABL87758.1| putative nucleotide binding protein [Pyrobaculum islandicum DSM
           4184]
          Length = 195

 Score = 46.3 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 20/40 (50%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
           SL  +KGVG    + I+E    KPF S ED   RV    +
Sbjct: 127 SLELLKGVGKKKVQEIIEERRKKPFVSYEDVKQRVGIDLV 166


>gi|221068834|ref|ZP_03544939.1| PHP domain protein [Comamonas testosteroni KF-1]
 gi|220713857|gb|EED69225.1| PHP domain protein [Comamonas testosteroni KF-1]
          Length = 296

 Score = 46.3 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  S  +G L+   +  + A       A+TD + +      +  A +AG+  + G 
Sbjct: 19 LHCHSVVS--DGTLTPEQLALRAAERGVELWALTDHDEVGGQHRAAAAAKSAGLDYLTGT 76

Query: 74 QLDIDMQD 81
          ++ +    
Sbjct: 77 EISVSFSG 84


>gi|20089612|ref|NP_615687.1| DNA-dependent DNA polymerase family X protein [Methanosarcina
           acetivorans C2A]
 gi|19914532|gb|AAM04167.1| DNA-directed DNA polymerase, family X [Methanosarcina acetivorans
           C2A]
          Length = 588

 Score = 46.3 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H+ YS  EG  SL  ++ K        IA+TD 
Sbjct: 357 HLHTDYS--EGRASLETMVKKAETMGYEYIAVTDH 389


>gi|312602647|ref|YP_004022492.1| DNA polymerase III subunit alpha [Burkholderia rhizoxinica HKI 454]
 gi|312169961|emb|CBW76973.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Burkholderia
           rhizoxinica HKI 454]
          Length = 121

 Score = 46.3 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRI----YYSLAAIKGVGT 847
           +  +        +  QDAR+  ++++P  V     D  +  + +       L+ I+G+  
Sbjct: 50  LNSQPMGFYTPSQLVQDARRHGVKVLPVDVTVSDWDSTLQRHSLEVPMRLGLSLIRGLAE 109

Query: 848 TTARHIMEASA 858
             A  I  A A
Sbjct: 110 DAAARIELARA 120


>gi|311069350|ref|YP_003974273.1| hypothetical protein BATR1942_12055 [Bacillus atrophaeus 1942]
 gi|310869867|gb|ADP33342.1| hypothetical protein BATR1942_12055 [Bacillus atrophaeus 1942]
          Length = 570

 Score = 46.3 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  +           +AITD 
Sbjct: 338 LHMHSAWS--DGAFSIREMAKACMEKGYEYMAITDH 371


>gi|293604183|ref|ZP_06686591.1| competence protein ComE [Achromobacter piechaudii ATCC 43553]
 gi|292817408|gb|EFF76481.1| competence protein ComE [Achromobacter piechaudii ATCC 43553]
          Length = 176

 Score = 46.3 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           L  I+G+G  TA  I+        FDS ED   RV  + +  +  ++L  AG
Sbjct: 88  LETIRGIGPRTAEIIINERERGGRFDSFEDLADRV--RGIGEKKAQALKAAG 137


>gi|254672045|emb|CBA04627.1| DNA polymerase III alpha subunit [Neisseria meningitidis alpha275]
          Length = 187

 Score = 46.3 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 5/33 (15%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 999  AMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
              V + +    ++G  I +V+  + + + E   
Sbjct: 26   GFVTAVRTMMGKRGK-IAFVSLEDLSGQVEIMV 57


>gi|158335490|ref|YP_001516662.1| phosphotransferase domain-containing protein [Acaryochloris
          marina MBIC11017]
 gi|158305731|gb|ABW27348.1| PHP domain protein [Acaryochloris marina MBIC11017]
          Length = 226

 Score = 46.3 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 6/49 (12%)

Query: 13 HLQV-HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          HL   HS     +G L    ++ +       ++AITD +++       +
Sbjct: 33 HLHTIHS-----DGRLEPQQLVQQAIDTGITSLAITDHHSVGGYWRALE 76


>gi|171316185|ref|ZP_02905409.1| helix-hairpin-helix motif [Burkholderia ambifaria MEX-5]
 gi|171098694|gb|EDT43489.1| helix-hairpin-helix motif [Burkholderia ambifaria MEX-5]
          Length = 114

 Score = 46.3 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  IKG+G   A+ I++   A  PF + +D  SRV  K +    +E L
Sbjct: 31  ALVGIKGIGPARAKAILDERGAHGPFRNADDLASRV--KGMGGHTVERL 77


>gi|92112839|ref|YP_572767.1| PHP-like protein [Chromohalobacter salexigens DSM 3043]
 gi|91795929|gb|ABE58068.1| PHP-like protein [Chromohalobacter salexigens DSM 3043]
          Length = 297

 Score = 46.3 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS+ S  +GALS   + +   A       +TD + +    E  + A + G++ + G 
Sbjct: 20 LHMHSTAS--DGALSPCALAEACQAKGVTRFCLTDHDTVAGVAEAQRHADSLGLRCLAGS 77

Query: 74 QLD 76
          +L 
Sbjct: 78 ELS 80


>gi|284033257|ref|YP_003383188.1| PHP domain-containing protein [Kribbella flavida DSM 17836]
 gi|283812550|gb|ADB34389.1| PHP domain protein [Kribbella flavida DSM 17836]
          Length = 293

 Score = 46.3 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G   ++ ++     D    IA+TD +      E  + A   GI  + G 
Sbjct: 5  LHTHSNRS--DGTDPVDVLIAHAKRDGLDVIALTDHDTADGWAEGRRAAEQLGIGFVPGI 62

Query: 74 QLD 76
          ++ 
Sbjct: 63 EIS 65


>gi|159028894|emb|CAO90699.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 516

 Score = 46.3 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 7/134 (5%)

Query: 752 LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQ 811
           ++    ++    +H    A++      +  H+  EF     T ++   E IK   +  R+
Sbjct: 384 VITGSHNWSKAANHQNDEALVIIDNPTVAAHFDREFQYLYRTAKLGLPETIKNRIERDRK 443

Query: 812 FNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSR 871
              Q +    +                L  + G+    A  I+ A   KPF SLED   R
Sbjct: 444 NCPQSLTIKSDRLINLNTATKEE----LDTLPGISGKLAEKIIAARQQKPFTSLEDL-DR 498

Query: 872 VDSKKLNRRVLESL 885
           V    + +  +  L
Sbjct: 499 V--SGIGKGKISKL 510


>gi|308272042|emb|CBX28650.1| Uncharacterized protein MJ1295 [uncultured Desulfobacterium sp.]
          Length = 211

 Score = 46.3 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  H+ +S  +G L  + +  +        IA TD  
Sbjct: 4  LHTHTFFS--DGVLIPSELARRAEDAGLKGIAFTDHG 38


>gi|113475538|ref|YP_721599.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Trichodesmium erythraeum IMS101]
 gi|110166586|gb|ABG51126.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Trichodesmium erythraeum IMS101]
          Length = 545

 Score = 46.3 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  + GVG   A  I++A  +KPF SL D         +  ++L+ L
Sbjct: 496 LETLPGVGPKLAERIIQARKNKPFTSLADLDQ---ISGIGPKILDKL 539


>gi|163750228|ref|ZP_02157470.1| TrpH family protein [Shewanella benthica KT99]
 gi|161330084|gb|EDQ01068.1| TrpH family protein [Shewanella benthica KT99]
          Length = 291

 Score = 46.3 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS 59
          L  H+  S  +G LS + ++++   +     AITD +      E  
Sbjct: 10 LHSHTKAS--DGQLSPSELIERAIVNGVQMFAITDHDTTAGLAEAH 53


>gi|325527402|gb|EGD04750.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Burkholderia sp. TJI49]
          Length = 109

 Score = 46.3 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L  IKG+G   A+ I++   A  PF + +D  +RV  K +  + +E L   G
Sbjct: 31  ALVGIKGIGPARAKAILDERGARGPFKNADDLAARV--KGMGGQTVERLQKEG 81


>gi|225405640|ref|ZP_03760829.1| hypothetical protein CLOSTASPAR_04861 [Clostridium asparagiforme
           DSM 15981]
 gi|225042834|gb|EEG53080.1| hypothetical protein CLOSTASPAR_04861 [Clostridium asparagiforme
           DSM 15981]
          Length = 242

 Score = 46.3 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 13/104 (12%)

Query: 14  LQVHSSYSLL---EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           L VHS  S     +  ++  NI    A     A+A+TD N   +   F   A   G+  +
Sbjct: 8   LHVHSCLSPCGDDD--MTPANIAGMAALKGLDAVALTDHNTCRNCPAFLAAAEEYGVLAV 65

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            G +++   + +                 V        Y +LI+
Sbjct: 66  PGMEINTSEEVHAVCLFPTLEAALEFDRYV--------YGKLIK 101


>gi|212638406|ref|YP_002314926.1| hypothetical protein Aflv_0560 [Anoxybacillus flavithermus WK1]
 gi|212559886|gb|ACJ32941.1| DNA polymerase IV fused to PHP family metal-dependent
           phosphoesterase [Anoxybacillus flavithermus WK1]
          Length = 569

 Score = 46.3 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  + +         IAITD 
Sbjct: 339 LHMHTTWS--DGAFSIEQMAEACRKKGYRYIAITDH 372


>gi|167037086|ref|YP_001664664.1| phosphotransferase domain-containing protein [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
 gi|167039822|ref|YP_001662807.1| phosphotransferase domain-containing protein [Thermoanaerobacter
          sp. X514]
 gi|166854062|gb|ABY92471.1| PHP C-terminal domain protein [Thermoanaerobacter sp. X514]
 gi|166855920|gb|ABY94328.1| PHP C-terminal domain protein [Thermoanaerobacter
          pseudethanolicus ATCC 33223]
          Length = 243

 Score = 46.3 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 15/76 (19%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSA-LEFSQKACAA----- 65
            H+ YS  +G   + + + +        IAITD       +       +K         
Sbjct: 8  HTHTVYSHGKGT--IEDNVKRAIEIGLEVIAITDHGPAHVFYGLRKRDFKKMREEIDKIN 65

Query: 66 ----GIQPIIGCQLDI 77
               I+ ++G + ++
Sbjct: 66 EKYPQIKVLMGVEANL 81


>gi|269215626|ref|ZP_06159480.1| competence protein [Slackia exigua ATCC 700122]
 gi|269131113|gb|EEZ62188.1| competence protein [Slackia exigua ATCC 700122]
          Length = 258

 Score = 46.3 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 838 SLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  I GVG  TAR I+E      PF S++D  +RV+   + ++ LE +
Sbjct: 207 ALDRIPGVGPATARAIVEEREKSGPFSSVDD-ITRVE--GIGKKKLERM 252


>gi|41615034|ref|NP_963532.1| DNA polymerase II small subunit [Nanoarchaeum equitans Kin4-M]
 gi|40068758|gb|AAR39093.1| NEQ240 [Nanoarchaeum equitans Kin4-M]
          Length = 526

 Score = 46.3 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 8/67 (11%), Positives = 19/67 (28%), Gaps = 6/67 (8%)

Query: 968  LDVYKPILR-KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
            LD YK +L+ ++        +       + +   V    ++          +   +    
Sbjct: 145  LDFYKRLLKGRLNPISIRNVLNLKENTEVSIIGRVFEIVKR-----DNYASLVLEDTTGR 199

Query: 1027 YEANFFP 1033
                 FP
Sbjct: 200  VIVKLFP 206


>gi|87302681|ref|ZP_01085492.1| hypothetical protein WH5701_13050 [Synechococcus sp. WH 5701]
 gi|87282564|gb|EAQ74522.1| hypothetical protein WH5701_13050 [Synechococcus sp. WH 5701]
          Length = 217

 Score = 46.3 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL 56
            H++ S  +G+L    + D+        +A+TD ++  + +
Sbjct: 26 HCHTTCS--DGSLQPEWLADQAVDRGLEHLAVTDHHSTAALV 65


>gi|322392095|ref|ZP_08065557.1| competence protein CelA [Streptococcus peroris ATCC 700780]
 gi|321144995|gb|EFX40394.1| competence protein CelA [Streptococcus peroris ATCC 700780]
          Length = 213

 Score = 46.3 bits (108), Expect = 0.028,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++    +  F S++D         +  + +E L
Sbjct: 162 LKQVKGLGAKRAQDIIDHRESNGKFKSVDDLKK---VSGIGAKTIEKL 206


>gi|322368101|ref|ZP_08042670.1| PHP domain protein [Haladaptatus paucihalophilus DX253]
 gi|320552117|gb|EFW93762.1| PHP domain protein [Haladaptatus paucihalophilus DX253]
          Length = 262

 Score = 46.3 bits (108), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 17/92 (18%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF-------SALEFSQKAC 63
          F  L VH++ S  +GA+ L+ +     +     +AITD + L        S ++      
Sbjct: 4  FADLHVHTTNS--DGAMELSEVPSAARSAGVSVVAITDHDRLHPDLPTPVSVVD------ 55

Query: 64 AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPT 95
            GI  + G +L ++  D   +   G   +PT
Sbjct: 56 --GITVVHGIELRVEAPDGQHLDLLGYGVYPT 85


>gi|162457066|ref|YP_001619433.1| DNA polymerase lambda [Sorangium cellulosum 'So ce 56']
 gi|161167648|emb|CAN98953.1| DNA polymerase lambda [Sorangium cellulosum 'So ce 56']
          Length = 589

 Score = 46.3 bits (108), Expect = 0.030,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             H+ YS  +G  ++  +  +  A     + ITD 
Sbjct: 360 HCHTVYS--DGKNTIEEMALEAEAMGMKYLTITDH 392


>gi|302348322|ref|YP_003815960.1| hypothetical protein ASAC_0522 [Acidilobus saccharovorans 345-15]
 gi|302328734|gb|ADL18929.1| hypothetical protein ASAC_0522 [Acidilobus saccharovorans 345-15]
          Length = 229

 Score = 46.3 bits (108), Expect = 0.030,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
            L  HS  S  +G  +   ++ + A     A+A++D N  
Sbjct: 8  AELHSHSRAS--DGKPTPEEVVIRAAQLGLSAVALSDHNTF 46


>gi|70607163|ref|YP_256033.1| hypothetical protein Saci_1410 [Sulfolobus acidocaldarius DSM 639]
 gi|68567811|gb|AAY80740.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639]
          Length = 223

 Score = 46.3 bits (108), Expect = 0.030,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 20/99 (20%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG---IQ--P 69
            VHS +S  +G  S  NI+         AIA+TD +             + G   ++  P
Sbjct: 6   HVHSFFS--DGRESPLNIIKYALRIGLDAIALTDHDT------------SKGYYTVKDYP 51

Query: 70  II-GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
           +I G ++  +    + + N   +P   +  +V       
Sbjct: 52  VIPGQEVTTEFGHVVILCNFPPSPPREIAKLVDYAKDNN 90


>gi|134295086|ref|YP_001118821.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Burkholderia vietnamiensis G4]
 gi|134138243|gb|ABO53986.1| helix-hairpin-helix motif protein [Burkholderia vietnamiensis G4]
          Length = 115

 Score = 46.3 bits (108), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  I+G+G   A+ I++   A  PF S +D  SRV  K +    +E L
Sbjct: 31  ALVGIRGIGPARAKAILDERSARGPFKSADDLASRV--KGMGGHTVERL 77


>gi|197116665|ref|YP_002137092.1| DNA polymerase IV domain-/PHP phosphoesterase domain-containing
           protein [Geobacter bemidjiensis Bem]
 gi|197086025|gb|ACH37296.1| DNA polymerase IV (family X) domain and PHP phosphoesterase domain
           protein PRK08609 [Geobacter bemidjiensis Bem]
          Length = 578

 Score = 46.3 bits (108), Expect = 0.030,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS +S  +GA  +  +++         IA+TD 
Sbjct: 340 LHVHSRWS--DGAHGIAELVEAARERGLSYIAVTDH 373


>gi|147678282|ref|YP_001212497.1| DNA polymerase IV, histidinol phosphatase and related hydrolases
           [Pelotomaculum thermopropionicum SI]
 gi|146274379|dbj|BAF60128.1| DNA polymerase IV, histidinol phosphatase and related hydrolases
           [Pelotomaculum thermopropionicum SI]
          Length = 567

 Score = 46.3 bits (108), Expect = 0.031,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +G  ++  +  +        IA+TD 
Sbjct: 336 LHIHTTWS--DGLGTVEQMAARAREKGYQYIAVTDH 369


>gi|170698408|ref|ZP_02889481.1| helix-hairpin-helix motif [Burkholderia ambifaria IOP40-10]
 gi|170136661|gb|EDT04916.1| helix-hairpin-helix motif [Burkholderia ambifaria IOP40-10]
          Length = 114

 Score = 46.3 bits (108), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  IKG+G   A+ I++   A  PF + ED  SRV  K +    +E L
Sbjct: 31  ALVGIKGIGPARAKAILDERGARGPFRNAEDLASRV--KGMGGHTVERL 77


>gi|172059989|ref|YP_001807641.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Burkholderia ambifaria MC40-6]
 gi|171992506|gb|ACB63425.1| helix-hairpin-helix motif protein [Burkholderia ambifaria MC40-6]
          Length = 114

 Score = 46.3 bits (108), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  IKG+G   A+ I++   A  PF + ED  SRV  K +    +E L
Sbjct: 31  ALVGIKGIGPARAKAILDERGARGPFRNAEDLASRV--KGMGGHTVERL 77


>gi|153940346|ref|YP_001392942.1| phosphotransferase domain-containing protein [Clostridium
          botulinum F str. Langeland]
 gi|152936242|gb|ABS41740.1| PHP domain protein [Clostridium botulinum F str. Langeland]
 gi|295320920|gb|ADG01298.1| PHP domain protein [Clostridium botulinum F str. 230613]
          Length = 225

 Score = 45.9 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 15 QVH-SSYSLLEGALSLNNILDKIAADQQPAIAITDTNN---LFSALEFSQKACAAGIQPI 70
           +H S YS L+  +SL  I+ +        + ITD  +   +    E    + A G   +
Sbjct: 6  HIHESKYS-LDSEISLEEIVKRGKEIGLDGVCITDHESSDIM---DEAHAYSKATGFLIL 61

Query: 71 IGCQL 75
          +G ++
Sbjct: 62 VGAEI 66


>gi|88800815|ref|ZP_01116371.1| hypothetical protein MED297_06529 [Reinekea sp. MED297]
 gi|88776455|gb|EAR07674.1| hypothetical protein MED297_06529 [Reinekea sp. MED297]
          Length = 2587

 Score = 45.9 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 15/106 (14%)

Query: 838 SLAAIKGVGTTTARHIMEASADK-PFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
           SL ++KG+G  TA  I+EA      F+S+E+    V   K   R +E+     A      
Sbjct: 14  SLQSVKGIGEKTAERIIEARNAGVEFNSMEELKGVVSYNKAFERDIEN-----AF----- 63

Query: 897 SRMQLLQSLDNIQKYAQWVEKNRTNKHEN-IFAHEKGTFSDKITLE 941
               L  S    +   +    N+   H + +F     T   + T++
Sbjct: 64  ---GLFWSKTTTEDDIKSYPPNKYGSHVDRLFEGSATTKGFEFTIK 106


>gi|206561278|ref|YP_002232043.1| hypothetical protein BCAL2943 [Burkholderia cenocepacia J2315]
 gi|198037320|emb|CAR53244.1| putative exported protein [Burkholderia cenocepacia J2315]
          Length = 115

 Score = 45.9 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  IKG+G   A+ I++   A  PF + +D   RV  K +    +E L
Sbjct: 31  ALVGIKGIGPARAKAILDERGARGPFRNADDLAKRV--KGMGGHTVERL 77


>gi|159042535|ref|YP_001541787.1| hypothetical protein Cmaq_1981 [Caldivirga maquilingensis IC-167]
 gi|157921370|gb|ABW02797.1| Protein of unknown function DUF655 [Caldivirga maquilingensis
           IC-167]
          Length = 191

 Score = 45.9 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           SL  +KG+G  T   ++E    KPF+S +DF +R+    + R ++E ++ 
Sbjct: 126 SLELLKGIGKKTLNQVLEERVKKPFESFDDFKNRIGIN-VQRLIVERIIR 174


>gi|83591307|ref|YP_431316.1| putative hydrolase [Moorella thermoacetica ATCC 39073]
 gi|83574221|gb|ABC20773.1| PHP-like protein [Moorella thermoacetica ATCC 39073]
          Length = 248

 Score = 45.9 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 64/227 (28%), Gaps = 59/227 (25%)

Query: 14  LQVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDT-------------NNLFSA 55
           L  H+     +YS      ++  + +         IAITD               NL + 
Sbjct: 7   LHTHTVASGHAYS------TVKELAEAAEKRGLKMIAITDHGLKMPGGPHEYHFGNLVAL 60

Query: 56  LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIEL 115
                     G++ + G + +I   D      +           ++L     G+      
Sbjct: 61  PR-----KIGGVEILRGVEANIIDVDGNLDLPERLLEELD----IVLA----GF------ 101

Query: 116 VSRMYLLDQGKQSV--RICLSWLQEIGTE--GLIMLTGGSSGPIDRAFFFNSSQVAEKRL 171
               +               + L  I      LI+  G    P+D        ++     
Sbjct: 102 ----HTGTGFDNRPAEDYTRAVLAAIANPRVHLIVHPGNPDFPVDI------EKLVLAAA 151

Query: 172 LTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSL 218
              K L  +    ++ R       R   + +LA  H++ +   +++ 
Sbjct: 152 REHKALEINNNSFSISRQGSLP--RCQLLAKLAQKHKVQVAVNSDAH 196


>gi|182436157|ref|YP_001823876.1| hypothetical protein SGR_2364 [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|326776783|ref|ZP_08236048.1| PHP domain protein [Streptomyces cf. griseus XylebKG-1]
 gi|178464673|dbj|BAG19193.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC
          13350]
 gi|326657116|gb|EGE41962.1| PHP domain protein [Streptomyces cf. griseus XylebKG-1]
          Length = 288

 Score = 45.9 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 9/66 (13%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA---GIQPI 70
          L  HS+ S  +G  +   ++   AA     +A+TD + +       ++A  A   G+  +
Sbjct: 5  LHTHSTAS--DGTDTPAELVANAAAAGLDVVALTDHDTVGG----HRQAIDALPDGLTLV 58

Query: 71 IGCQLD 76
           G +L 
Sbjct: 59 TGAELS 64


>gi|34499286|ref|NP_903501.1| DNA transport competence protein [Chromobacterium violaceum ATCC
           12472]
 gi|34105137|gb|AAQ61493.1| probable DNA transport competence protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 105

 Score = 45.9 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           L A+KG+G   A+ I++    + PF +++D         +  + LESL  
Sbjct: 32  LEALKGIGPAKAKAIVDYRTKNGPFKTVDDLKK---VSGIGDKTLESLRK 78


>gi|304315526|ref|YP_003850673.1| DNA polymerase II, small subunit [Methanothermobacter marburgensis
            str. Marburg]
 gi|302588985|gb|ADL59360.1| predicted DNA polymerase II, small subunit [Methanothermobacter
            marburgensis str. Marburg]
          Length = 487

 Score = 45.9 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 4/65 (6%), Positives = 18/65 (27%), Gaps = 10/65 (15%)

Query: 971  YKPILRKM----GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE 1026
             + +L++           +         + +  ++   +   T+   R+  +   +   E
Sbjct: 118  LRDLLKRRPELKSHVPIADLRGGDD--AVSIIGIINEIRT--TKNNHRM--LELEDDTGE 171

Query: 1027 YEANF 1031
                 
Sbjct: 172  ITVVV 176


>gi|146311855|ref|YP_001176929.1| phosphotransferase domain-containing protein [Enterobacter sp.
          638]
 gi|145318731|gb|ABP60878.1| PHP C-terminal domain protein [Enterobacter sp. 638]
          Length = 298

 Score = 45.9 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK--ACA-AGIQPI 70
          L  H+  S  +G L+   ++ +    +   +AITD +    A+  ++   A +   +  I
Sbjct: 16 LHSHTQAS--DGLLTPEALVHRAVEMRVGTLAITDHDTT-DAIPAARAEIARSGLALNLI 72

Query: 71 IGCQLDIDMQDN 82
           G ++    +++
Sbjct: 73 SGVEISTVWENH 84


>gi|124025710|ref|YP_001014826.1| metal-dependent phosphoesterase [Prochlorococcus marinus str.
          NATL1A]
 gi|123960778|gb|ABM75561.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Prochlorococcus marinus str. NATL1A]
          Length = 231

 Score = 45.9 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +HS+YS  +G+LS   I ++         AITD ++    ++  ++   
Sbjct: 40 HMHSTYS--DGSLSPKEIYNQALELNIDHYAITDHHS----VDAYRELVK 83


>gi|126178422|ref|YP_001046387.1| hypothetical protein Memar_0472 [Methanoculleus marisnigri JR1]
 gi|125861216|gb|ABN56405.1| PHP C-terminal domain protein [Methanoculleus marisnigri JR1]
          Length = 214

 Score = 45.9 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 17/98 (17%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT---NNLFSALEFSQKACA------ 64
           L  H+   L +G L    ++ + A      +A+TD    +NL        +A +      
Sbjct: 4   LHTHTI--LSDGELLPTELVRRAAVLGYETLAVTDHADASNL----RHLVEAVSSVRESA 57

Query: 65  --AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
              G+  ++G +L       +    +    F     +V
Sbjct: 58  RCYGVGLLVGVELTHVPPSLIPAFARDAKKFGADIVVV 95


>gi|330998753|ref|ZP_08322481.1| PHP domain protein [Parasutterella excrementihominis YIT 11859]
 gi|329576250|gb|EGG57766.1| PHP domain protein [Parasutterella excrementihominis YIT 11859]
          Length = 281

 Score = 45.9 bits (107), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS++S  +G      ++ +   +    I++TD +           A   G+Q   G 
Sbjct: 9  LHMHSTFS--DGVEEPEELVIRAKNNGVELISLTDHDETGGLERMKAAAAQHGLQFANGV 66

Query: 74 QLDIDMQD 81
          ++  D  +
Sbjct: 67 EISADYGE 74


>gi|254526857|ref|ZP_05138909.1| PHP family metal-dependent phosphoesterase [Prochlorococcus
          marinus str. MIT 9202]
 gi|221538281|gb|EEE40734.1| PHP family metal-dependent phosphoesterase [Prochlorococcus
          marinus str. MIT 9202]
          Length = 215

 Score = 45.9 bits (107), Expect = 0.035,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 32/71 (45%), Gaps = 15/71 (21%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI------- 67
            H+++S  +G++   ++LD+   ++   ++ITD ++    +   +     G+       
Sbjct: 25 HCHTNFS--DGSMCPEDLLDQAFRNKLQFLSITDHHS----ILAHKYISDNGLLKKYPKN 78

Query: 68 --QPIIGCQLD 76
              I G +++
Sbjct: 79 SFTLIPGIEIN 89


>gi|148381525|ref|YP_001256066.1| PHP domain protein [Clostridium botulinum A str. ATCC 3502]
 gi|153931689|ref|YP_001385899.1| phosphotransferase domain-containing protein [Clostridium
          botulinum A str. ATCC 19397]
 gi|153937841|ref|YP_001389306.1| phosphotransferase domain-containing protein [Clostridium
          botulinum A str. Hall]
 gi|148291009|emb|CAL85146.1| putative phosphoesterase [Clostridium botulinum A str. ATCC 3502]
 gi|152927733|gb|ABS33233.1| PHP domain protein [Clostridium botulinum A str. ATCC 19397]
 gi|152933755|gb|ABS39254.1| PHP domain protein [Clostridium botulinum A str. Hall]
 gi|322807910|emb|CBZ05485.1| hypothetical protein H04402_03687 [Clostridium botulinum H04402
          065]
          Length = 225

 Score = 45.9 bits (107), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 15 QVH-SSYSLLEGALSLNNILDKIAADQQPAIAITDTNN---LFSALEFSQKACAAGIQPI 70
           +H S YS L+  +SL  I+ +        + ITD  +   +    E    + A G   +
Sbjct: 6  HIHESKYS-LDSEISLEEIVKRGKEIGLDGVCITDHESSDIM---DEAHAYSKATGFLIL 61

Query: 71 IGCQL 75
          +G ++
Sbjct: 62 VGAEI 66


>gi|313497708|gb|ADR59074.1| TrpH family protein [Pseudomonas putida BIRD-1]
          Length = 257

 Score = 45.9 bits (107), Expect = 0.035,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 3/63 (4%)

Query: 41  QPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
             A+A+TD + L    E  Q     G++ + G +L                P    P   
Sbjct: 1   MQALALTDHDTLEGLPEARQACVDLGMRWVSGVELSCTWGGATIHVLGYDFPLDAPP--- 57

Query: 101 LLV 103
           LL 
Sbjct: 58  LLA 60


>gi|226951040|ref|YP_002806131.1| PHP domain protein [Clostridium botulinum A2 str. Kyoto]
 gi|226843353|gb|ACO86019.1| PHP domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 225

 Score = 45.9 bits (107), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 15 QVH-SSYSLLEGALSLNNILDKIAADQQPAIAITDTNN---LFSALEFSQKACAAGIQPI 70
           +H S YS L+  +SL  I+ +        + ITD  +   +    E    + A G   +
Sbjct: 6  HIHESKYS-LDSEISLEEIVKRGKEIGLDGVCITDHESSDIM---DEAHAYSKATGFLIL 61

Query: 71 IGCQL 75
          +G ++
Sbjct: 62 VGAEI 66


>gi|167586771|ref|ZP_02379159.1| PHP domain protein [Burkholderia ubonensis Bu]
          Length = 276

 Score = 45.9 bits (107), Expect = 0.035,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS--ALEFSQKACAAGIQPII 71
           L  HS+ S  +G LS  ++  +  A      A+TD + +    A     +A A G++ + 
Sbjct: 5   LHCHSNVS--DGLLSPADVARRAHAGGVTLWALTDHDEVGGQAAAR--SEAEALGMRYLS 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           G ++ +           G    P  P++V
Sbjct: 61  GVEISVTWASRTVHIV-GLNIDPANPALV 88


>gi|330428685|gb|AEC20019.1| hypothetical protein PT7_1479 [Pusillimonas sp. T7-7]
          Length = 164

 Score = 45.9 bits (107), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           L  ++G+G  TA+ I+E       ++SLED   R+      +    +L  AG
Sbjct: 94  LRGVRGIGPKTAKTIIEERSRAGRYESLEDLSDRIKGIGPKKAA--ALQAAG 143


>gi|77920179|ref|YP_357994.1| putative hydrolase [Pelobacter carbinolicus DSM 2380]
 gi|90101852|sp|Q3A1D3|Y2586_PELCD RecName: Full=Putative hydrolase Pcar_2586
 gi|77546262|gb|ABA89824.1| histidinol phosphatase [Pelobacter carbinolicus DSM 2380]
          Length = 240

 Score = 45.9 bits (107), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 12/50 (24%)

Query: 14 LQVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTN-NLFSALE 57
          L VHS     +YS      ++N I  + A      +A+TD   N+ +A  
Sbjct: 11 LHVHSLASGHAYS------TINEIAAEAARRGLRGVAMTDHGPNMPAAPH 54


>gi|266622525|ref|ZP_06115460.1| PHP domain protein [Clostridium hathewayi DSM 13479]
 gi|288865734|gb|EFC98032.1| PHP domain protein [Clostridium hathewayi DSM 13479]
          Length = 87

 Score = 45.9 bits (107), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 13/75 (17%)

Query: 14 LQVHS------SYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
          L +HS       Y+          ++    A     IA+TD N++ S       A + G+
Sbjct: 6  LHIHSAASDDGEYT-------PQELVAMCTAQGMELIAVTDHNSVRSVTAAQSTASSCGL 58

Query: 68 QPIIGCQLDIDMQDN 82
          + + G +LD   +  
Sbjct: 59 RVLSGVELDCTHKGR 73


>gi|299066883|emb|CBJ38078.1| conserved exported protein of unknown function [Ralstonia
           solanacearum CMR15]
          Length = 105

 Score = 45.9 bits (107), Expect = 0.037,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS---KKLNRRVLESLV--FAGA 890
           +L  + GVG   ++ I+E    + P+    DF +RV     K L +   E L     GA
Sbjct: 32  ALETLSGVGPKRSKAIVEERAKNGPYKDAADFMARVPGIGEKSLAKLQNEGLAFGKGGA 90


>gi|17545635|ref|NP_519037.1| putative ComEA-related signal peptide protein [Ralstonia
           solanacearum GMI1000]
 gi|17427928|emb|CAD14618.1| putative signal peptide protein [Ralstonia solanacearum GMI1000]
          Length = 105

 Score = 45.9 bits (107), Expect = 0.037,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDS---KKLNRRVLESLV--FAGA 890
           +L  + GVG   ++ I+E    + P+    DF +RV     K L +   E L     GA
Sbjct: 32  ALETLSGVGPKRSKAIVEERAKNGPYKDAADFMARVPGIGEKSLAKLQNEGLAFGKGGA 90


>gi|167769569|ref|ZP_02441622.1| hypothetical protein ANACOL_00903 [Anaerotruncus colihominis DSM
          17241]
 gi|167668537|gb|EDS12667.1| hypothetical protein ANACOL_00903 [Anaerotruncus colihominis DSM
          17241]
          Length = 274

 Score = 45.9 bits (107), Expect = 0.037,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H++ S  +G      ++          +A+TD +++    +    A A G+  + G 
Sbjct: 4  LHLHTTAS--DGQYPPEQVVRMAHERGVTFLAVTDHDSVNGVEKARTAAAALGVGFVSGI 61

Query: 74 QLD 76
          ++ 
Sbjct: 62 EIS 64


>gi|153854943|ref|ZP_01996156.1| hypothetical protein DORLON_02162 [Dorea longicatena DSM 13814]
 gi|149752440|gb|EDM62371.1| hypothetical protein DORLON_02162 [Dorea longicatena DSM 13814]
          Length = 219

 Score = 45.9 bits (107), Expect = 0.037,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 24 EGALSLNNILDKIAADQQPAIAITDTNNLFSALE-FSQKACAAGIQPII-GCQL 75
          +  L L  +++        AI ITD +++    E  ++ +   G  PI  G + 
Sbjct: 15 DSFLKLEEMVEIAREKGLGAICITDHDDM-GLKEYAAEYSKKTGF-PIFVGIEF 66


>gi|268324173|emb|CBH37761.1| probable DNA polymerase II small subunit [uncultured archaeon]
          Length = 492

 Score = 45.9 bits (107), Expect = 0.038,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 4/56 (7%)

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            R++                + +  MV S    KT KG+    V   +P+       
Sbjct: 127  RRISCGQIRYLKNRREKEEVSIVGMVSSIN--KTAKGN--TRVDLEDPSGIMSVIL 178


>gi|261210664|ref|ZP_05924956.1| PHP family hydrolase [Vibrio sp. RC341]
 gi|260840149|gb|EEX66729.1| PHP family hydrolase [Vibrio sp. RC341]
          Length = 290

 Score = 45.9 bits (107), Expect = 0.038,   Method: Composition-based stats.
 Identities = 12/93 (12%), Positives = 33/93 (35%), Gaps = 4/93 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
           L  H++ S  +G  +   ++++  +     +AITD + + +              +Q + 
Sbjct: 5   LHSHTTAS--DGRFTYQELIERAVSFNIDVLAITDHDTVAALNDARAYIAQQQYPLQLVN 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS 104
           G ++    Q+             +    +L+  
Sbjct: 63  GIEISTVWQNKDIHIVGLNIDSDSEALGLLIAQ 95


>gi|297617886|ref|YP_003703045.1| PHP domain protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145723|gb|ADI02480.1| PHP domain protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 558

 Score = 45.9 bits (107), Expect = 0.038,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+ +S  +GA SL  ++   A      +A+T+ 
Sbjct: 327 LHIHTDWS--DGAHSLREMVAAAAKLGYSYMAVTEH 360


>gi|257439574|ref|ZP_05615329.1| putative phosphoesterase PHP [Faecalibacterium prausnitzii
          A2-165]
 gi|257197941|gb|EEU96225.1| putative phosphoesterase PHP [Faecalibacterium prausnitzii
          A2-165]
          Length = 282

 Score = 45.9 bits (107), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  H++YS  +G++ +  +    A     A+AI+D + L S           G++ I   
Sbjct: 5  LHNHTTYS--DGSVPVARLPLMAARVGLDAMAISDHDTLRSVQYAYDHPVQDGVKLIPAT 62

Query: 74 QLD 76
          +L 
Sbjct: 63 ELT 65


>gi|188997023|ref|YP_001931274.1| phosphoesterase PHP domain protein [Sulfurihydrogenibium sp.
          YO3AOP1]
 gi|188932090|gb|ACD66720.1| phosphoesterase PHP domain protein [Sulfurihydrogenibium sp.
          YO3AOP1]
          Length = 347

 Score = 45.9 bits (107), Expect = 0.038,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAA-DQQPAIAITDTNNL 52
           VH+ +S  +     ++ + K    +    + ITD +NL
Sbjct: 37 HVHTQFSF-DSLGKPSD-IKKAMEINNIDYVFITDHDNL 73


>gi|37522720|ref|NP_926097.1| hypothetical protein glr3151 [Gloeobacter violaceus PCC 7421]
 gi|35213722|dbj|BAC91092.1| glr3151 [Gloeobacter violaceus PCC 7421]
          Length = 241

 Score = 45.9 bits (107), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  + G+    AR I+EA     P+ S ++   R D   +  R LE L
Sbjct: 118 LLRLPGLSIIEARRIVEARRSGGPYLSADELIERADLSSIKVRRLEPL 165


>gi|254166601|ref|ZP_04873455.1| conserved hypothetical protein [Aciduliprofundum boonei T469]
 gi|254167305|ref|ZP_04874157.1| conserved hypothetical protein [Aciduliprofundum boonei T469]
 gi|289596438|ref|YP_003483134.1| Protein of unknown function DUF655 [Aciduliprofundum boonei T469]
 gi|197623568|gb|EDY36131.1| conserved hypothetical protein [Aciduliprofundum boonei T469]
 gi|197624211|gb|EDY36772.1| conserved hypothetical protein [Aciduliprofundum boonei T469]
 gi|289534225|gb|ADD08572.1| Protein of unknown function DUF655 [Aciduliprofundum boonei T469]
          Length = 182

 Score = 45.9 bits (107), Expect = 0.039,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
           L  + G+G  T   I+E     PF   ED  +RV  
Sbjct: 118 LELLPGLGKKTMWAILEERKKGPFKDFEDLRNRVKL 153


>gi|148266263|ref|YP_001232969.1| putative hydrolase [Geobacter uraniireducens Rf4]
 gi|146399763|gb|ABQ28396.1| PHP C-terminal domain protein [Geobacter uraniireducens Rf4]
          Length = 237

 Score = 45.9 bits (107), Expect = 0.039,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 23/83 (27%)

Query: 15 QVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTN-NL--------FSALEFS- 59
            H+     +YS      ++N + D  A+    AIA+TD    L        F A+ F  
Sbjct: 8  HTHTIASGHAYS------TVNELADAAASIGLKAIALTDHGPALPGGPHLYHFGAMRFIP 61

Query: 60 QKACAAGIQPIIGCQLDIDMQDN 82
          ++    G++  +G + +I   D 
Sbjct: 62 REL--FGVRIFLGVEANILDIDG 82


>gi|323526590|ref|YP_004228743.1| PHP domain-containing protein [Burkholderia sp. CCGE1001]
 gi|323383592|gb|ADX55683.1| PHP domain protein [Burkholderia sp. CCGE1001]
          Length = 277

 Score = 45.9 bits (107), Expect = 0.039,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G  +  ++  +  A      A+TD + L    E  Q A   G++ + G 
Sbjct: 6   LHCHS--TVSDGQFAPADVARRAHAGGVTLWALTDHDELGGQHEARQAAEELGMRYLSGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVL--LVSTAEG 108
           ++ +      +  +          S+++  L  T  G
Sbjct: 64  EISVTWA--ARTVHIVGLGIDPTSSVLIDGLARTRNG 98


>gi|160945453|ref|ZP_02092679.1| hypothetical protein FAEPRAM212_02977 [Faecalibacterium
          prausnitzii M21/2]
 gi|158443184|gb|EDP20189.1| hypothetical protein FAEPRAM212_02977 [Faecalibacterium
          prausnitzii M21/2]
 gi|295105385|emb|CBL02929.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Faecalibacterium prausnitzii SL3/3]
          Length = 286

 Score = 45.9 bits (107), Expect = 0.039,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L +HS+ S  +GA+ +  +    A     AIA++D + L
Sbjct: 5  LHIHSTCS--DGAVPIERLAPIAARTGLHAIALSDHDTL 41


>gi|206901108|ref|YP_002251308.1| DNA polymerase beta family [Dictyoglomus thermophilum H-6-12]
 gi|206740211|gb|ACI19269.1| DNA polymerase beta family [Dictyoglomus thermophilum H-6-12]
          Length = 580

 Score = 45.9 bits (107), Expect = 0.039,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH+ +S  +GA +L  +++         + I+D 
Sbjct: 345 HVHTDWS--DGANTLEEMVETAYRLGYKYVVISDH 377


>gi|157413347|ref|YP_001484213.1| metal-dependent phosphoesterase [Prochlorococcus marinus str. MIT
          9215]
 gi|157387922|gb|ABV50627.1| Predicted metal-dependent phosphoesterase (PHP family)
          [Prochlorococcus marinus str. MIT 9215]
          Length = 215

 Score = 45.9 bits (107), Expect = 0.039,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 32/71 (45%), Gaps = 15/71 (21%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI------- 67
            H+++S  +G++   ++LD+   ++   ++ITD ++    +   +     G+       
Sbjct: 25 HCHTNFS--DGSMCPEDLLDQAFRNKLQFLSITDHHS----ILAHKYISDNGLLKKYPKN 78

Query: 68 --QPIIGCQLD 76
              I G +++
Sbjct: 79 SFTLIPGIEIN 89


>gi|289578833|ref|YP_003477460.1| PHP domain protein [Thermoanaerobacter italicus Ab9]
 gi|297545053|ref|YP_003677355.1| PHP domain protein [Thermoanaerobacter mathranii subsp. mathranii
          str. A3]
 gi|289528546|gb|ADD02898.1| PHP domain protein [Thermoanaerobacter italicus Ab9]
 gi|296842828|gb|ADH61344.1| PHP domain protein [Thermoanaerobacter mathranii subsp. mathranii
          str. A3]
          Length = 243

 Score = 45.9 bits (107), Expect = 0.040,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 15/76 (19%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSALEF-SQKACAA----- 65
            H+ YS  +G   + + + +        IAITD       +   ++  +K         
Sbjct: 8  HTHTVYSHGKGT--IEDNVKRAIKIGLEEIAITDHGPAHVFYGLRKWDFKKMREEIDKIN 65

Query: 66 ----GIQPIIGCQLDI 77
               I+ ++G + ++
Sbjct: 66 EKYPQIKVLMGVEANL 81


>gi|284989047|ref|YP_003407601.1| PHP domain-containing protein [Geodermatophilus obscurus DSM 43160]
 gi|284062292|gb|ADB73230.1| PHP domain protein [Geodermatophilus obscurus DSM 43160]
          Length = 357

 Score = 45.9 bits (107), Expect = 0.040,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS +S  +G   +  + +         +A+TD 
Sbjct: 109 LHVHSDWS--DGGSPIREMAEAAIGLGHEYMALTDH 142


>gi|269986505|gb|EEZ92790.1| protein of unknown function DUF655 [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 176

 Score = 45.9 bits (107), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 834 RIYY-SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            +   SLA I G G    + IME  +   F S +DF  RV       + +E+ + 
Sbjct: 109 NVRLHSLALIPGAGKKMVQKIMEERSKGEFKSYKDFDDRVGFTSGIAKSIENRIK 163


>gi|121606164|ref|YP_983493.1| phosphotransferase domain-containing protein [Polaromonas
          naphthalenivorans CJ2]
 gi|120595133|gb|ABM38572.1| PHP C-terminal domain protein [Polaromonas naphthalenivorans CJ2]
          Length = 287

 Score = 45.9 bits (107), Expect = 0.040,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS  S  +G L+   + ++   +     A+TD +
Sbjct: 11 LHCHSVVS--DGTLTPEALAERAKNNGVELWALTDHD 45


>gi|288870549|ref|ZP_06114508.2| histidinol phosphatase [Clostridium hathewayi DSM 13479]
 gi|288866768|gb|EFC99066.1| histidinol phosphatase [Clostridium hathewayi DSM 13479]
          Length = 277

 Score = 45.6 bits (106), Expect = 0.041,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 9  PSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          P +    +H+ +S  +        +++       ++ ITD 
Sbjct: 15 PDY---HLHTDFS-GDSTTPPRAQIERAIQLGMDSLCITDH 51


>gi|163816444|ref|ZP_02207808.1| hypothetical protein COPEUT_02633 [Coprococcus eutactus ATCC
          27759]
 gi|158448144|gb|EDP25139.1| hypothetical protein COPEUT_02633 [Coprococcus eutactus ATCC
          27759]
          Length = 306

 Score = 45.6 bits (106), Expect = 0.041,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG 66
           F+ + +H++ S  +G+ S + +          AIAITD + +    E    A    
Sbjct: 2  RFIDMHLHTTAS--DGSCSPSEVCQLAIDKGLAAIAITDHDTIDGVSEAISYAKHHN 56


>gi|157961470|ref|YP_001501504.1| phosphotransferase domain-containing protein [Shewanella pealeana
          ATCC 700345]
 gi|157846470|gb|ABV86969.1| PHP domain protein [Shewanella pealeana ATCC 700345]
          Length = 292

 Score = 45.6 bits (106), Expect = 0.041,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--KACAAGIQPII 71
          L  H++ S  +G L+ + ++++  +      AITD +     +E  +  +A    ++ I 
Sbjct: 16 LHSHTTAS--DGQLTPSQLIERAISKGVHMFAITDHDTTDGLIEAHEFNRAHETPLELIN 73

Query: 72 GCQLD 76
          G ++ 
Sbjct: 74 GVEIS 78


>gi|288559417|ref|YP_003422903.1| RNA-binding protein [Methanobrevibacter ruminantium M1]
 gi|288542127|gb|ADC46011.1| RNA-binding protein [Methanobrevibacter ruminantium M1]
          Length = 249

 Score = 45.6 bits (106), Expect = 0.041,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS 874
           L  I G+G    + I+E    +PF   ED   RV  
Sbjct: 130 LELIPGIGKKHTQMILEERKKEPFKDFEDLKKRVPL 165


>gi|325290155|ref|YP_004266336.1| PHP domain protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324965556|gb|ADY56335.1| PHP domain protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 283

 Score = 45.6 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G LS+       A      IA  D        +  + A    I  I G 
Sbjct: 9  LHIHTKES--DGLLSVEEAFQTAAQAGLSTIAFVDHETTVGVEKSFKLAEVYQINLIPGV 66

Query: 74 QLDIDMQD 81
          +++ D ++
Sbjct: 67 EIETDYKN 74


>gi|110669313|ref|YP_659124.1| hypothetical protein HQ3441A [Haloquadratum walsbyi DSM 16790]
 gi|109627060|emb|CAJ53538.1| conserved hypothetical protein [Haloquadratum walsbyi DSM 16790]
          Length = 271

 Score = 45.6 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 27/107 (25%)

Query: 6   EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF----------SA 55
             +PS   L +H++ S  +G L+++ + +         +A+TD + +            A
Sbjct: 8   TDAPS-ADLHIHTTAS--DGLLTIDELPEVAHKAGIDTVAVTDHDRIHPELATPVSTKGA 64

Query: 56  LEFSQKACAAGIQPII-GCQLDIDMQD-NLKMTNQGKTPFPTVPSIV 100
           +             II G +L +   D  L +         ++  + 
Sbjct: 65  V------------TIIRGIELRVSAGDQRLDLLGYAVRRTDSLIELT 99


>gi|121533599|ref|ZP_01665426.1| PHP C-terminal domain protein [Thermosinus carboxydivorans Nor1]
 gi|121307590|gb|EAX48505.1| PHP C-terminal domain protein [Thermosinus carboxydivorans Nor1]
          Length = 576

 Score = 45.6 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH+ YS  +G  ++  +     A     I ITD 
Sbjct: 340 HVHTVYS--DGTATIAEMARGAQARGWQYIGITDH 372


>gi|300312578|ref|YP_003776670.1| PHP family metal-dependent phosphoesterase [Herbaspirillum
          seropedicae SmR1]
 gi|300075363|gb|ADJ64762.1| PHP family metal-dependent phosphoesterase protein
          [Herbaspirillum seropedicae SmR1]
          Length = 282

 Score = 45.6 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS+ S  +G L    +  +  A+     A+TD +
Sbjct: 10 LHCHSNVS--DGLLPPEQVAARAKANGVGVWALTDHD 44


>gi|253698904|ref|YP_003020093.1| PHP domain protein [Geobacter sp. M21]
 gi|251773754|gb|ACT16335.1| PHP domain protein [Geobacter sp. M21]
          Length = 578

 Score = 45.6 bits (106), Expect = 0.043,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS +S  +GA +++ +++         +A+TD 
Sbjct: 340 LHVHSRWS--DGAHAVSELVEAARERGLSYLAVTDH 373


>gi|119962368|ref|YP_947284.1| hypothetical protein AAur_1516 [Arthrobacter aurescens TC1]
 gi|119949227|gb|ABM08138.1| putative DNA polymerase beta chain [Arthrobacter aurescens TC1]
          Length = 339

 Score = 45.6 bits (106), Expect = 0.043,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 18/90 (20%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT-------NNLF--------SALEF 58
           L  HS++S  +G   +  ++       +  +A+TD        N L           +E 
Sbjct: 103 LHSHSNWS--DGGSPIEAMVAAARTLGREYLALTDHSPNLTIANGLSVERLEKQLGVVEG 160

Query: 59  SQKACAAGIQPIIGCQLDIDMQDNLKMTNQ 88
              +   G + + G ++DI     L  T  
Sbjct: 161 INSSQD-GFRLLKGIEVDILEDGTLDQTAD 189


>gi|225175316|ref|ZP_03729311.1| PHP domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169068|gb|EEG77867.1| PHP domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 254

 Score = 45.6 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 26/115 (22%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN------NLFSALEFSQKACAA--- 65
             H+ YS   G  S+ + ++         +AI D         +     F +        
Sbjct: 8   HTHTRYS--HGKGSIKDNVEAAVKRGLSTLAIADHGPGHFFIGIGGVQAFYR-MQKEVAS 64

Query: 66  ------GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
                  ++ ++G + +I   D                  +LLV    GY +L++
Sbjct: 65  LRRKYPKLEILLGVEANIVDTDGTIDVPTTMLRELD----ILLV----GYHKLVK 111


>gi|332035710|gb|EGI72198.1| conserved enzyme [Pseudoalteromonas haloplanktis ANT/505]
          Length = 284

 Score = 45.6 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--KACAAGIQPII 71
          L  H+++S  +G L++  +L +         AITD + + +     Q  +A    +  I 
Sbjct: 6  LHSHTTHS--DGRLTVEELLHRAVDKNIDVFAITDHDTVAAIKPAQQFIEAENLPLSLIT 63

Query: 72 GCQLDIDMQD 81
          G ++    + 
Sbjct: 64 GTEVSTKWES 73


>gi|219854774|ref|YP_002471896.1| hypothetical protein CKR_1431 [Clostridium kluyveri NBRC 12016]
 gi|219568498|dbj|BAH06482.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 285

 Score = 45.6 bits (106), Expect = 0.045,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
           +H++ S  +G LS   I+          IAITD + +        +     I+ I G +
Sbjct: 11 HLHTTAS--DGKLSPAEIVTNSKKAGLDIIAITDHDTISGIDSALYQGEKVNIKVIPGLE 68

Query: 75 LD 76
          L 
Sbjct: 69 LS 70


>gi|188026070|ref|ZP_02960761.2| hypothetical protein PROSTU_02729 [Providencia stuartii ATCC
          25827]
 gi|188021500|gb|EDU59540.1| hypothetical protein PROSTU_02729 [Providencia stuartii ATCC
          25827]
          Length = 282

 Score = 45.6 bits (106), Expect = 0.045,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
          L  H+  S  +G LS   ++++        ++ITD +     +E 
Sbjct: 6  LHCHTQAS--DGDLSPIEVVERAIEMGVNVLSITDHDTCEGVIEA 48


>gi|254303493|ref|ZP_04970851.1| possible PHP family metal-dependent phosphoesterase
          [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148323685|gb|EDK88935.1| possible PHP family metal-dependent phosphoesterase
          [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 270

 Score = 45.6 bits (106), Expect = 0.045,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
           +H++ S  +G  + + I+          IAITD + L    E    A    I+ + G +
Sbjct: 6  HLHTTAS--DGQYTPSEIVYLAHKLGIEKIAITDHDTLNGLDEAICAASQYSIEVLQGIE 63

Query: 75 L 75
          L
Sbjct: 64 L 64


>gi|111020584|ref|YP_703556.1| hypothetical protein RHA1_ro03595 [Rhodococcus jostii RHA1]
 gi|110820114|gb|ABG95398.1| possible DNA polymerase [Rhodococcus jostii RHA1]
          Length = 338

 Score = 45.6 bits (106), Expect = 0.045,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS +S  +G   ++ ++   AA      A+TD 
Sbjct: 105 LHTHSDWS--DGGSPIDEMMRSAAALGHEYCALTDH 138


>gi|19074286|ref|NP_585792.1| REPLICATION FACTOR A PROTEIN 2 (32KDA SUBUNIT) [Encephalitozoon
            cuniculi GB-M1]
 gi|19068928|emb|CAD25396.1| REPLICATION FACTOR A PROTEIN 2 (32KDA SUBUNIT) [Encephalitozoon
            cuniculi GB-M1]
          Length = 274

 Score = 45.6 bits (106), Expect = 0.045,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 18/84 (21%)

Query: 956  QRVLGFYFSGHPLDVYKPI-LRKMGIKGYEE-----SVATIRGNNIRLAAMVVSKQQKKT 1009
            + +LG       +   + + ++++G   ++E      V +    N+++   VVS   K +
Sbjct: 63   RELLG-------VKTLRALTIKQIGSCDFDETSSTHLVDSAEVTNVQIIGWVVS--SKTS 113

Query: 1010 RKGSRIGWVTFSEPAKEYEANFFP 1033
              GS        +     +  F+P
Sbjct: 114  ATGSMFV---LEDGTGSVDCTFWP 134


>gi|326390953|ref|ZP_08212503.1| PHP domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325992995|gb|EGD51437.1| PHP domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 243

 Score = 45.6 bits (106), Expect = 0.045,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 17/77 (22%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSALE--FSQKACAA---- 65
            H+ YS  +G   + + + +        IAITD       +   +  F +K        
Sbjct: 8  HTHTVYSHGKGT--IEDNVKRAIEIGLEEIAITDHGPAHVFYGLRKGDF-KKMREEIDKI 64

Query: 66 -----GIQPIIGCQLDI 77
                I+ ++G + ++
Sbjct: 65 NEKYPQIKVLMGVEANL 81


>gi|172060804|ref|YP_001808456.1| hypothetical protein BamMC406_1755 [Burkholderia ambifaria MC40-6]
 gi|171993321|gb|ACB64240.1| conserved hypothetical protein [Burkholderia ambifaria MC40-6]
          Length = 203

 Score = 45.6 bits (106), Expect = 0.046,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV 872
           +L A+KG+G   ++ I++    + PF   +D  +RV
Sbjct: 33  ALEAVKGLGPVKSKAIIDERTKNGPFKDADDLANRV 68


>gi|115351834|ref|YP_773673.1| hypothetical protein Bamb_1783 [Burkholderia ambifaria AMMD]
 gi|115281822|gb|ABI87339.1| conserved hypothetical protein [Burkholderia ambifaria AMMD]
          Length = 203

 Score = 45.6 bits (106), Expect = 0.046,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV 872
           +L A+KG+G   ++ I++    + PF   +D  +RV
Sbjct: 33  ALEAVKGLGPVKSKAIIDERTKNGPFKDADDLANRV 68


>gi|134295876|ref|YP_001119611.1| hypothetical protein Bcep1808_1772 [Burkholderia vietnamiensis G4]
 gi|134139033|gb|ABO54776.1| conserved hypothetical protein [Burkholderia vietnamiensis G4]
          Length = 200

 Score = 45.6 bits (106), Expect = 0.046,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV 872
           +L A+KG+G   ++ I++    + PF   +D  +RV
Sbjct: 33  ALEAVKGLGPVKSKAIIDERTKNGPFKDADDLANRV 68


>gi|239944097|ref|ZP_04696034.1| hypothetical protein SrosN15_24061 [Streptomyces roseosporus NRRL
          15998]
 gi|239990550|ref|ZP_04711214.1| hypothetical protein SrosN1_24798 [Streptomyces roseosporus NRRL
          11379]
 gi|291447565|ref|ZP_06586955.1| PHP C-terminal domain-containing protein [Streptomyces
          roseosporus NRRL 15998]
 gi|291350512|gb|EFE77416.1| PHP C-terminal domain-containing protein [Streptomyces
          roseosporus NRRL 15998]
          Length = 288

 Score = 45.6 bits (106), Expect = 0.046,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 9/66 (13%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA---GIQPI 70
          L  HS+ S  +G  +   ++   AA     +A+TD + +       Q+A  A   G+  +
Sbjct: 5  LHTHSTAS--DGTDTPAELVANAAAAGLDVVALTDHDTVGG----HQRAIDALPEGLTLV 58

Query: 71 IGCQLD 76
           G +L 
Sbjct: 59 TGAELS 64


>gi|296121981|ref|YP_003629759.1| DNA-directed DNA polymerase [Planctomyces limnophilus DSM 3776]
 gi|296014321|gb|ADG67560.1| DNA-directed DNA polymerase [Planctomyces limnophilus DSM 3776]
          Length = 570

 Score = 45.6 bits (106), Expect = 0.046,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+  +  +GA S+  +++   A     IAITD 
Sbjct: 338 LHMHT--TATDGAGSIEEMIEGARAAGLKYIAITDH 371


>gi|111020472|ref|YP_703444.1| hypothetical protein RHA1_ro03483 [Rhodococcus jostii RHA1]
 gi|110820002|gb|ABG95286.1| possible DNA polymerase [Rhodococcus jostii RHA1]
          Length = 338

 Score = 45.6 bits (106), Expect = 0.046,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS +S  +G   +  ++ + AA      AITD 
Sbjct: 100 LHTHSDWS--DGRCPIREMMRRAAALGHEYCAITDH 133


>gi|312144372|ref|YP_003995818.1| PHP domain protein [Halanaerobium sp. 'sapolanicus']
 gi|311905023|gb|ADQ15464.1| PHP domain protein [Halanaerobium sp. 'sapolanicus']
          Length = 284

 Score = 45.6 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H++ S  +GAL+   ++ K         ++TD +N  +  E  ++A    I+ + G 
Sbjct: 10 LHMHTTAS--DGALTPKELVQKCLEFDLDVFSVTDHDNTTALRELEKEADKYPIEFVPGI 67

Query: 74 QLD 76
          ++ 
Sbjct: 68 EIS 70


>gi|300865126|ref|ZP_07109951.1| PHP domain protein [Oscillatoria sp. PCC 6506]
 gi|300336897|emb|CBN55101.1| PHP domain protein [Oscillatoria sp. PCC 6506]
          Length = 237

 Score = 45.6 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
           +H+  S  +G L  + +++   A     +AITD ++   
Sbjct: 41 HLHTVCS--DGQLRPDELMESAIAIGLKGLAITDHHSTNG 78


>gi|157363267|ref|YP_001470034.1| phosphotransferase domain-containing protein [Thermotoga lettingae
           TMO]
 gi|157313871|gb|ABV32970.1| PHP domain protein [Thermotoga lettingae TMO]
          Length = 459

 Score = 45.6 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQP-AIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            +H+ YS  +G   +  +     A     AI +TD N +   +E    A   G+ PI+G 
Sbjct: 115 HLHTIYS--DGKQDVETVAKACVACGLSWAI-LTDHNTIKGGIE-WTAASKYGLLPILGE 170

Query: 74  QLD 76
           ++ 
Sbjct: 171 EVT 173


>gi|284165904|ref|YP_003404183.1| DNA-directed DNA polymerase [Haloterrigena turkmenica DSM 5511]
 gi|284015559|gb|ADB61510.1| DNA-directed DNA polymerase [Haloterrigena turkmenica DSM 5511]
          Length = 583

 Score = 45.6 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 19/97 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT-------NNLFSA--------LEF 58
           L  H+ +S  +G  ++  ++D  A       A+ D          +           +E 
Sbjct: 353 LHTHTEWS--DGNTTIEAMVDAAAEMGYDYYAVADHAEGPGIVGGM-GLSDTEILEQVEA 409

Query: 59  SQK-ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFP 94
            ++ A A  I    G + ++D    + ++ +      
Sbjct: 410 IREVAAARDIAVFAGIEANVDADGEIDLSEEVIDALD 446


>gi|13541145|ref|NP_110833.1| RNA-binding protein [Thermoplasma volcanium GSS1]
 gi|14324531|dbj|BAB59458.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 182

 Score = 45.6 bits (106), Expect = 0.047,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV-----DSKKLNRRVLESL 885
           SL  + G+G  T   I+E    KPFDS ED  +RV       K +  R++E L
Sbjct: 117 SLELLPGLGNKTMWAILEERKKKPFDSFEDLVNRVKSIHNPQKMIAGRIIEEL 169


>gi|166365472|ref|YP_001657745.1| hypothetical protein MAE_27310 [Microcystis aeruginosa NIES-843]
 gi|166087845|dbj|BAG02553.1| hypothetical protein MAE_27310 [Microcystis aeruginosa NIES-843]
          Length = 227

 Score = 45.6 bits (106), Expect = 0.048,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 10/52 (19%)

Query: 13 HLQVH-SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
          HL  H S     +G +S  +++ +        +AITD ++    +E  ++A 
Sbjct: 36 HLHTHCS-----DGQMSPQDLMRQALDIGLKGLAITDHHS----IEGYRQAQ 78


>gi|78065639|ref|YP_368408.1| DNA-binding protein [Burkholderia sp. 383]
 gi|77966384|gb|ABB07764.1| DNA-binding protein [Burkholderia sp. 383]
          Length = 113

 Score = 45.6 bits (106), Expect = 0.048,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L  IKG+G   A+ I++   A  PF + +D  SRV  K +    +E L   G
Sbjct: 31  ALVGIKGIGPARAKAILDERGARGPFRNADDLASRV--KGMGGHTVERLQREG 81


>gi|18314000|ref|NP_560667.1| hypothetical protein PAE3336 [Pyrobaculum aerophilum str. IM2]
 gi|18161576|gb|AAL64849.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 194

 Score = 45.6 bits (106), Expect = 0.048,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
           SL  ++GVG    + I++    +PF S ED   RV 
Sbjct: 127 SLELLRGVGKKKVQEILDERKKRPFTSYEDVKQRVG 162


>gi|295706822|ref|YP_003599897.1| DNA-directed DNA polymerase X [Bacillus megaterium DSM 319]
 gi|294804481|gb|ADF41547.1| DNA-directed DNA polymerase X [Bacillus megaterium DSM 319]
          Length = 570

 Score = 45.6 bits (106), Expect = 0.049,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +   A     +AITD 
Sbjct: 338 LHMHSTWS--DGAYSIEEMAEACRARGYEYMAITDH 371


>gi|91774321|ref|YP_567013.1| PHP-like protein [Methanococcoides burtonii DSM 6242]
 gi|91713336|gb|ABE53263.1| phosphoesterase [Methanococcoides burtonii DSM 6242]
          Length = 223

 Score = 45.6 bits (106), Expect = 0.049,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 13/91 (14%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN-----LFSALEFSQKACAAG-- 66
          L VHS +S  +      +IL+    +    +AI D +      +      S+ A      
Sbjct: 5  LHVHSWFS-KDSNSDPASILEYAKMNGLDGVAICDHDTREGGLVC-----SRLAKDTNSD 58

Query: 67 IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
          I  I G ++       L +  +G       P
Sbjct: 59 IIVIPGVEVTSSKGHILVLDPKGDIESGMTP 89


>gi|307265906|ref|ZP_07547455.1| PHP domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919075|gb|EFN49300.1| PHP domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 243

 Score = 45.6 bits (106), Expect = 0.049,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 17/77 (22%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSALE--FSQKACAA---- 65
            H+ YS  +G   + + + +        IAITD       +   +  F +K        
Sbjct: 8  HTHTVYSHGKGT--IEDNVKRAIEIGLEEIAITDHGPAHVFYGLRKGDF-KKMREEIDKI 64

Query: 66 -----GIQPIIGCQLDI 77
                I+ ++G + ++
Sbjct: 65 NEKYPQIKVLMGVEANL 81


>gi|319652297|ref|ZP_08006414.1| hypothetical protein HMPREF1013_03027 [Bacillus sp. 2_A_57_CT2]
 gi|317395958|gb|EFV76679.1| hypothetical protein HMPREF1013_03027 [Bacillus sp. 2_A_57_CT2]
          Length = 288

 Score = 45.6 bits (106), Expect = 0.049,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 58/177 (32%), Gaps = 27/177 (15%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  H++  + +  LS++ +L+   A++   +AIT+ +      E  ++     ++ I 
Sbjct: 3   VELHCHTN--ISDCPLSIDEVLNLAIANEVSHLAITNHDTTKGLQEAIERGKRYRVEVIP 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIV-LLVST---AEGYQRLI-----ELVSRMYLL 122
           G ++     D  +  +            +  L           +L       L+S  Y  
Sbjct: 61  GIEISAFDFDRARRVHILGYFIEPGHKAIETLCQPIIERR--HKLSFEMVQRLISAGYS- 117

Query: 123 DQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
                   I      E+   G    TG     I  A        +      +KKLFG
Sbjct: 118 --------ITWDRCLELSAGG----TGVYKQHIMEALIETGYADSI-YGSQYKKLFG 161


>gi|50954622|ref|YP_061910.1| hypothetical protein Lxx09150 [Leifsonia xyli subsp. xyli str.
          CTCB07]
 gi|50951104|gb|AAT88805.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
          CTCB07]
          Length = 271

 Score = 45.6 bits (106), Expect = 0.049,   Method: Composition-based stats.
 Identities = 6/33 (18%), Positives = 15/33 (45%)

Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
          + +G  +   ++   AA     +A+TD ++   
Sbjct: 1  MSDGTDTPGELVRAAAAAGLGTVALTDHDSTAG 33


>gi|281354905|ref|ZP_06241399.1| PHP domain protein [Victivallis vadensis ATCC BAA-548]
 gi|281317785|gb|EFB01805.1| PHP domain protein [Victivallis vadensis ATCC BAA-548]
          Length = 944

 Score = 45.6 bits (106), Expect = 0.050,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 8/84 (9%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             H+ +S  +G  +   +L +  A     + I+D + +  AL   +           GC 
Sbjct: 677 HTHTIFS--DGQSTPAGLLAEAPAAGFDFLVISDHDEVAGALRLMENMRRN------GCG 728

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPS 98
           L +     + MT +       +P 
Sbjct: 729 LWLFAGQEITMTPRYHLNVYPIPR 752


>gi|207111598|ref|ZP_03245760.1| DNA polymerase III subunit alpha [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 43

 Score = 45.6 bits (106), Expect = 0.051,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 851 RHIMEASADKPFDSLEDFCSRVDSKKL 877
           ++I+E  A   + SLEDF SRVD  KL
Sbjct: 1   KNIIEERAKGDYKSLEDFISRVDFSKL 27


>gi|268611681|ref|ZP_06145408.1| hypothetical protein RflaF_19513 [Ruminococcus flavefaciens FD-1]
          Length = 281

 Score = 45.6 bits (106), Expect = 0.051,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 1/36 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
            H+ +S+ +    +   + +       A AITD  
Sbjct: 7  HTHTQFSV-DSEADIEKCIGRAIELGLAAYAITDHC 41


>gi|297619875|ref|YP_003707980.1| PHP domain protein [Methanococcus voltae A3]
 gi|297378852|gb|ADI37007.1| PHP domain protein [Methanococcus voltae A3]
          Length = 221

 Score = 45.6 bits (106), Expect = 0.051,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 68/219 (31%), Gaps = 62/219 (28%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSALEFSQKACAA------ 65
             H+ YS  +G L  + ++ +  A +   IA+TD     N        ++          
Sbjct: 6   HAHTLYS--DGELLPSELIRRAIALKHKTIALTDHGDISN-------YKELIRMGLETKN 56

Query: 66  ------GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRM 119
                 GI  I G +L         +    K        +V+ V        L+E V   
Sbjct: 57  ELKNYWGINVIAGIELTHIPP--KSIPKLAKKCKDEGAELVV-VHGET----LVEPV--- 106

Query: 120 YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFG 179
              ++      +  S +  +   GLI                      ++     K+   
Sbjct: 107 --EEKTNYYTSLS-SDVDILAHGGLI---------------------DQETAQNLKE--- 139

Query: 180 DRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSL 218
           + +Y+ +   +G+       V+ ++  + +P V   +S 
Sbjct: 140 NDIYLEITSRKGH-SLSNGCVLNVSRKYGIPTVINTDSH 177


>gi|264676973|ref|YP_003276879.1| PHP-like protein [Comamonas testosteroni CNB-2]
 gi|262207485|gb|ACY31583.1| PHP-like protein [Comamonas testosteroni CNB-2]
          Length = 287

 Score = 45.6 bits (106), Expect = 0.052,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS  S  +G L+   +  + A       A+TD +
Sbjct: 10 LHCHSVVS--DGTLTPEQLALRAAERGVELWALTDHD 44


>gi|294501474|ref|YP_003565174.1| DNA-directed DNA polymerase X [Bacillus megaterium QM B1551]
 gi|294351411|gb|ADE71740.1| DNA-directed DNA polymerase X [Bacillus megaterium QM B1551]
          Length = 570

 Score = 45.6 bits (106), Expect = 0.052,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +   A     +AITD 
Sbjct: 338 LHMHSTWS--DGAYSIEEMAEACRARGYEYMAITDH 371


>gi|299531544|ref|ZP_07044950.1| PHP-like protein [Comamonas testosteroni S44]
 gi|298720507|gb|EFI61458.1| PHP-like protein [Comamonas testosteroni S44]
          Length = 296

 Score = 45.6 bits (106), Expect = 0.053,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS  S  +G L+   +  + A       A+TD +
Sbjct: 19 LHCHSVVS--DGTLTPEQLALRAAERGVELWALTDHD 53


>gi|260904106|ref|ZP_05912428.1| phosphotransferase domain-containing protein [Brevibacterium
          linens BL2]
          Length = 285

 Score = 45.6 bits (106), Expect = 0.053,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L VH+++S  +G  + + +L + + +    + +TD + 
Sbjct: 5  LHVHTAFS--DGTQTPSELLSEASMEGIDVLGVTDHDT 40


>gi|225390219|ref|ZP_03759943.1| hypothetical protein CLOSTASPAR_03969 [Clostridium asparagiforme
          DSM 15981]
 gi|225043730|gb|EEG53976.1| hypothetical protein CLOSTASPAR_03969 [Clostridium asparagiforme
          DSM 15981]
          Length = 297

 Score = 45.6 bits (106), Expect = 0.053,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 14/68 (20%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI-----Q 68
          L  H+  S  +GA S+  +L +    +   ++ITD N +             GI      
Sbjct: 4  LHTHTCCS--DGADSVETLLRRAEEQKLSVLSITDHNTVA----AY---RGRGILEYSGT 54

Query: 69 PIIGCQLD 76
           I G ++ 
Sbjct: 55 LIPGVEIT 62


>gi|188584737|ref|YP_001916282.1| PHP domain protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349424|gb|ACB83694.1| PHP domain protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 251

 Score = 45.6 bits (106), Expect = 0.053,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 12/78 (15%)

Query: 5  LEKSPSF-VHLQVHSSYSL---LE-GALSLNNILDKIAADQQPAIAITDTNNLFS--ALE 57
          + K   F   L +HS  S    L+ G    NNI+D    +    IAITD N         
Sbjct: 1  MSKGKWFKADLHIHSVLSPCADLDMG---PNNIIDICKRENIEIIAITDHNT--GRNVPA 55

Query: 58 FSQKACAAGIQPIIGCQL 75
          F +KA   GI  I G +L
Sbjct: 56 FQKKAAREGITVIPGMEL 73


>gi|293399764|ref|ZP_06643910.1| putative PHP domain protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306164|gb|EFE47407.1| putative PHP domain protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 501

 Score = 45.2 bits (105), Expect = 0.053,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 9/66 (13%)

Query: 14  LQVHSSYSLLEGAL-SLNNILDKIAADQQPAIAITDTNNL---FSALEFSQKACAAGIQP 69
           L +HS++S+  GA  ++  I           I+ITD N       AL  S+     GI+ 
Sbjct: 215 LHIHSNFSI--GADYNIEEIFQSAKRQGLKTISITDLNTTKSNAIALRMSEL---YGIRY 269

Query: 70  IIGCQL 75
           + G ++
Sbjct: 270 VNGVEI 275


>gi|126667147|ref|ZP_01738121.1| hypothetical protein MELB17_07319 [Marinobacter sp. ELB17]
 gi|126628303|gb|EAZ98926.1| hypothetical protein MELB17_07319 [Marinobacter sp. ELB17]
          Length = 97

 Score = 45.2 bits (105), Expect = 0.053,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 838 SLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLE 883
           SLA++ G+G + A  I+E   A+ PF S +D     + K +  R +E
Sbjct: 37  SLASLSGIGQSKAEAIVEYREANGPFTSTQDL---ANVKGIGARTVE 80


>gi|160938539|ref|ZP_02085893.1| hypothetical protein CLOBOL_03436 [Clostridium bolteae ATCC
          BAA-613]
 gi|158438526|gb|EDP16284.1| hypothetical protein CLOBOL_03436 [Clostridium bolteae ATCC
          BAA-613]
          Length = 294

 Score = 45.2 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 9/69 (13%)

Query: 17 HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----QKACAAGIQPIIG 72
          HS YS  +G  S   ++ + A      ++I D N+    +  +    Q A  AGI+ + G
Sbjct: 2  HSYYSD-DGEFSPEELVRQCAMSGIRVMSIADHNS----VRANDGGRQAARRAGIRYVSG 56

Query: 73 CQLDIDMQD 81
           ++D   + 
Sbjct: 57 IEIDCTFRG 65


>gi|262198731|ref|YP_003269940.1| glycosyl transferase group 1 [Haliangium ochraceum DSM 14365]
 gi|262082078|gb|ACY18047.1| glycosyl transferase group 1 [Haliangium ochraceum DSM 14365]
          Length = 810

 Score = 45.2 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 14/62 (22%)

Query: 14 LQVHSSYS------LLE------GALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          L VHSSYS       L          S   + +         + +TD N +  ALE    
Sbjct: 12 LHVHSSYSDTPQNWFLRTGGVAESYTSPQTVYETAMRRGMSLVTLTDHNTIAGALEL--A 69

Query: 62 AC 63
          A 
Sbjct: 70 AK 71


>gi|107022132|ref|YP_620459.1| hypothetical protein Bcen_0575 [Burkholderia cenocepacia AU 1054]
 gi|116689077|ref|YP_834700.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Burkholderia cenocepacia HI2424]
 gi|170732365|ref|YP_001764312.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Burkholderia cenocepacia MC0-3]
 gi|254245984|ref|ZP_04939305.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184]
 gi|105892321|gb|ABF75486.1| conserved hypothetical protein [Burkholderia cenocepacia AU 1054]
 gi|116647166|gb|ABK07807.1| helix-hairpin-helix motif protein [Burkholderia cenocepacia HI2424]
 gi|124870760|gb|EAY62476.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184]
 gi|169815607|gb|ACA90190.1| helix-hairpin-helix motif [Burkholderia cenocepacia MC0-3]
          Length = 115

 Score = 45.2 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  IKG+G   A+ I++   A  PF + +D  +RV  K +    +E L
Sbjct: 31  ALVGIKGIGPARAKAILDERGARGPFRNADDLATRV--KGMGGHTVERL 77


>gi|311031395|ref|ZP_07709485.1| hypothetical protein Bm3-1_12746 [Bacillus sp. m3-13]
          Length = 573

 Score = 45.2 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 6/38 (15%)

Query: 14  LQVHSSYSLLEGALSLNNILD--KIAADQQPAIAITDT 49
           L +HS+YS  +GA ++  +++  +        +AITD 
Sbjct: 340 LHMHSTYS--DGAHTMEEMIEANRAK--GYKYMAITDH 373


>gi|225023842|ref|ZP_03713034.1| hypothetical protein EIKCOROL_00708 [Eikenella corrodens ATCC
          23834]
 gi|224943316|gb|EEG24525.1| hypothetical protein EIKCOROL_00708 [Eikenella corrodens ATCC
          23834]
          Length = 258

 Score = 45.2 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query: 32 ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82
          ++    A+    +A+TD ++     E  Q+A A GI+ I G ++ +  +  
Sbjct: 1  MVKLAHANGCTLLALTDHDHTGGLAEARQEAEALGIRLINGVEISVSWRKR 51


>gi|296134208|ref|YP_003641455.1| PHP domain protein [Thermincola sp. JR]
 gi|296032786|gb|ADG83554.1| PHP domain protein [Thermincola potens JR]
          Length = 243

 Score = 45.2 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 5/46 (10%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          +E    +     H+ YS  +G  ++              + ITD  
Sbjct: 1  MEFFADY---HTHTVYS--DGGGTIEENARAAKEKGLEVLGITDHG 41


>gi|226357870|ref|YP_002787610.1| PHP-like protein [Deinococcus deserti VCD115]
 gi|226320113|gb|ACO48106.1| putative PHP-like protein [Deinococcus deserti VCD115]
          Length = 472

 Score = 45.2 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 2/37 (5%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            L  H+ +S  +G  +   +           +A+TD 
Sbjct: 151 ELHAHTHHS--DGRPTPGELAGAARRAGLDFVALTDH 185


>gi|219850480|ref|YP_002464913.1| ATP-dependent DNA helicase RecG [Chloroflexus aggregans DSM 9485]
 gi|219544739|gb|ACL26477.1| ATP-dependent DNA helicase RecG [Chloroflexus aggregans DSM 9485]
          Length = 862

 Score = 45.2 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 42/170 (24%), Gaps = 52/170 (30%)

Query: 898  RMQLLQ-SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQ 956
            R Q L  +++ ++         RTN      A         +   + S      R  +++
Sbjct: 71   RDQALATAIEELRSL------FRTNHPTPALATTAPVTLPSLAPRRTSSRQERQRLASDK 124

Query: 957  RVLGFYFSGHPLDVYK----------------PILRKMGIKGYEESV------------- 987
                     HPL                       R++G+    + +             
Sbjct: 125  ---------HPLTDLDLDAKLDQIAGVDSRTVASFRRIGVVTIRDLLYHFPRRYDDVRSR 175

Query: 988  ----ATIRGNNIRLAAMVVSKQQKKTRKG-SRIGWVTFSEPAKEYEANFF 1032
                    G    +   V   +   T  G      V  S+     EA FF
Sbjct: 176  RTIDELQVGAEETVIGEVTDVRTIGT--GPKLRVRVEVSDETGSIEAIFF 223


>gi|115526043|ref|YP_782954.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Rhodopseudomonas
            palustris BisA53]
 gi|115519990|gb|ABJ07974.1| nucleic acid binding, OB-fold, tRNA/helicase-type [Rhodopseudomonas
            palustris BisA53]
          Length = 128

 Score = 45.2 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 5/27 (18%), Positives = 10/27 (37%), Gaps = 2/27 (7%)

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFFP 1033
              + KG  + +VT  +         +P
Sbjct: 2    PGSAKG--VLFVTIEDETGIANLVVWP 26


>gi|315126775|ref|YP_004068778.1| hypothetical protein PSM_A1702 [Pseudoalteromonas sp. SM9913]
 gi|315015289|gb|ADT68627.1| hypothetical protein PSM_A1702 [Pseudoalteromonas sp. SM9913]
          Length = 284

 Score = 45.2 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-ACAAG--IQPI 70
           L  H+++S  +G L++  +L +         AITD + +  A+E +Q         ++ I
Sbjct: 6   LHSHTTHS--DGHLTVEELLARAVDKNIDVFAITDHDTVA-AIEPAQAFIKRENLPLRLI 62

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
            G ++    +                    LL
Sbjct: 63  NGVEISTKWESFEIHIVGLNIDTNDSTLHTLL 94


>gi|258652375|ref|YP_003201531.1| PHP domain-containing protein [Nakamurella multipartita DSM
          44233]
 gi|258555600|gb|ACV78542.1| PHP domain protein [Nakamurella multipartita DSM 44233]
          Length = 287

 Score = 45.2 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  +   ++   AA     +AITD +N          A  AG+  I G 
Sbjct: 5  LHAHSTAS--DGTDTPAELMLAAAAAGLDVVAITDHDNTMGWAPAL-AARPAGLTVIRGA 61

Query: 74 QLD 76
          +  
Sbjct: 62 EFS 64


>gi|91786905|ref|YP_547857.1| PHP-like protein [Polaromonas sp. JS666]
 gi|91696130|gb|ABE42959.1| PHP-like protein [Polaromonas sp. JS666]
          Length = 286

 Score = 45.2 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS  S  +G L+   + ++   +     A+TD +
Sbjct: 11 LHCHSVVS--DGTLTPEALAERAKTNGVELWALTDHD 45


>gi|332158062|ref|YP_004423341.1| hypothetical protein PNA2_0420 [Pyrococcus sp. NA2]
 gi|331033525|gb|AEC51337.1| hypothetical protein PNA2_0420 [Pyrococcus sp. NA2]
          Length = 205

 Score = 45.2 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV-----DSKKLNRRVLESL 885
           SL  + G+G      I+E    KPF+S ED   RV       K + +R+L+ L
Sbjct: 135 SLELLPGIGKKHMWDIIEEREKKPFESFEDLKKRVKGLPDPVKMIAKRILDEL 187


>gi|312883595|ref|ZP_07743320.1| putative metal-dependent phosphoesterase YciV [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309368818|gb|EFP96345.1| putative metal-dependent phosphoesterase YciV [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 283

 Score = 45.2 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA--CAAGIQPII 71
           L  H++ S  +G LS   ++D+    +   +AITD + +    +  +        ++ + 
Sbjct: 5   LHSHTTAS--DGRLSPQALVDRAIDFELDVLAITDHDTIEGLDQAHRYINERQLSLKLVN 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
           G ++    Q+                 + L+ +  E   RL  
Sbjct: 63  GIEVSTVWQNKDIHIVGLNIDVGCRELLNLIAAQKE--HRLSR 103


>gi|218262083|ref|ZP_03476680.1| hypothetical protein PRABACTJOHN_02352 [Parabacteroides johnsonii
          DSM 18315]
 gi|218223612|gb|EEC96262.1| hypothetical protein PRABACTJOHN_02352 [Parabacteroides johnsonii
          DSM 18315]
          Length = 246

 Score = 45.2 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 14 LQVHSSYSLLEGA-LSLNNILDKIAADQQPAIAITDTNN 51
          L +H+  S      +S   I++        AIA+TD N+
Sbjct: 8  LHLHTCLSPCGSLEMSPRQIVETALEQGLDAIAVTDHNS 46


>gi|167629877|ref|YP_001680376.1| DNA polymerase x family protein, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167592617|gb|ABZ84365.1| DNA polymerase x family protein, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 572

 Score = 45.2 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 9/48 (18%)

Query: 9   PSFVHL-------QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           P  V L        +H+++S  +G  SL  ++          +AITD 
Sbjct: 327 PDLVELGDILGDFHIHTNWS--DGVSSLEEMVSAGRDRGYAYMAITDH 372


>gi|71907132|ref|YP_284719.1| hypothetical protein Daro_1500 [Dechloromonas aromatica RCB]
 gi|71846753|gb|AAZ46249.1| hypothetical protein Daro_1500 [Dechloromonas aromatica RCB]
          Length = 370

 Score = 45.2 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSR--VDSKKLNR-RVLESL 885
           LAAIKG+    AR I+ A    P+ SL+D C    +  KKL + R L +L
Sbjct: 324 LAAIKGLPREVARAIIAAR---PYASLDDVCKAKGMGLKKLAKLRDLLAL 370


>gi|325853109|ref|ZP_08171258.1| PHP domain protein [Prevotella denticola CRIS 18C-A]
 gi|325484483|gb|EGC87404.1| PHP domain protein [Prevotella denticola CRIS 18C-A]
          Length = 884

 Score = 45.2 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 41/137 (29%), Gaps = 25/137 (18%)

Query: 14  LQVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDT----NNLFSALEFSQKACA 64
           L +HS     S+ + + + +   I++         I+ITD     N+L++       A  
Sbjct: 12  LHIHSYGGSGSFDVTDASNTPQAIVETAITKGLKIISITDHNQFLNSLYAV----NYAKD 67

Query: 65  AGIQ--PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL-----LVSTAEGYQRLIELVS 117
             I    I G ++       L   +           +       L      YQ + E ++
Sbjct: 68  KNIDILAIPGIEVSTTQGHLLLYFDTPDDLQKFYGKLTFNDDKSLC-----YQGIAECLN 122

Query: 118 RMYLLDQGKQSVRICLS 134
                        I L 
Sbjct: 123 FANQYGGIGILAHITLE 139


>gi|166031670|ref|ZP_02234499.1| hypothetical protein DORFOR_01370 [Dorea formicigenerans ATCC
           27755]
 gi|166028647|gb|EDR47404.1| hypothetical protein DORFOR_01370 [Dorea formicigenerans ATCC
           27755]
          Length = 233

 Score = 45.2 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 22/102 (21%)

Query: 5   LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE-FSQKAC 63
           +  SP           S L     L  ++         A+ ITD +++    +  ++   
Sbjct: 10  MTYSPD----------SFL----KLEEMVRIGKEKGLGALCITDHDSM-GLKDYAAEYTA 54

Query: 64  AAGIQPII-GCQLDIDMQD----NLKMTNQGKTPFPTVPSIV 100
             G  PI  G +      D     ++   + + P      +V
Sbjct: 55  RTGF-PIFVGIEFYSLQGDIVAFGIEDYPKERIPAQDFIDLV 95


>gi|254492271|ref|ZP_05105445.1| hypothetical protein MDMS009_2615 [Methylophaga thiooxidans
          DMS010]
 gi|224462596|gb|EEF78871.1| hypothetical protein MDMS009_2615 [Methylophaga thiooxydans
          DMS010]
          Length = 254

 Score = 45.2 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%)

Query: 33 LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDM 79
          +++ +      +A+TD +      E  + A  AGI  I G ++ +  
Sbjct: 1  MERASQQGVTHLALTDHDGTEGIEEAKRIANQAGIALIPGVEISVSW 47


>gi|300704490|ref|YP_003746093.1| hypothetical protein RCFBP_20294 [Ralstonia solanacearum
          CFBP2957]
 gi|299072154|emb|CBJ43486.1| conserved protein of unknown function, PHP domain-like [Ralstonia
          solanacearum CFBP2957]
          Length = 286

 Score = 45.2 bits (105), Expect = 0.058,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS--ALEFSQKACAAGIQPII 71
          L  HS  ++ +G L+   +  + AA      A+TD + +    A    + A + G+  + 
Sbjct: 14 LHCHS--TVSDGLLAPREVAARAAAHGVTLWALTDHDEVGGQAAAR--EAAESLGMDYLP 69

Query: 72 GCQLDIDMQDN 82
          G ++ +     
Sbjct: 70 GVEISVTWAGR 80


>gi|119510545|ref|ZP_01629676.1| PHP-like protein [Nodularia spumigena CCY9414]
 gi|119464812|gb|EAW45718.1| PHP-like protein [Nodularia spumigena CCY9414]
          Length = 227

 Score = 45.2 bits (105), Expect = 0.058,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 10/53 (18%)

Query: 13 HLQ-VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          HL  VHS     +G L  + ++++  A     +AITD ++    ++  + A  
Sbjct: 34 HLHTVHS-----DGKLQPSTLMEQAIAIGLQGLAITDHHS----IKGYEAAQD 77


>gi|160900160|ref|YP_001565742.1| hypothetical protein Daci_4728 [Delftia acidovorans SPH-1]
 gi|160365744|gb|ABX37357.1| conserved hypothetical protein [Delftia acidovorans SPH-1]
          Length = 136

 Score = 45.2 bits (105), Expect = 0.058,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
           L +IKG+G   +  I+E      F    DF +RV
Sbjct: 32  LTSIKGIGPAMSARILEERKSSAFKDWPDFIARV 65


>gi|29827309|ref|NP_821943.1| hypothetical protein SAV_768 [Streptomyces avermitilis MA-4680]
 gi|29604408|dbj|BAC68478.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 129

 Score = 45.2 bits (105), Expect = 0.058,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 24 EGALSLNNILDKIAADQQPAIAITDTNNLFSALE--FSQKACAAGIQPIIGCQL 75
           GA     ++ + A      +A T  + +   +   F   A AAG +P++G  +
Sbjct: 8  YGASLPGALVQRAAERGMTTLAPTGRDTVAGTVRFLFLTAAAAAGSRPVLGVDV 61


>gi|15669485|ref|NP_248295.1| hypothetical protein MJ_1295 [Methanocaldococcus jannaschii DSM
           2661]
 gi|41018419|sp|Q58691|Y1295_METJA RecName: Full=Uncharacterized protein MJ1295
 gi|1591933|gb|AAB99302.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 218

 Score = 45.2 bits (105), Expect = 0.059,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 25/102 (24%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--SQK-------ACAA 65
             H+ +S  +G L    ++ +    +  AIAITD        +F   ++       A   
Sbjct: 6   HTHTVFS--DGELIPAELVRRARVLKHRAIAITDHA------DFSNYKELIEKTTIAKEE 57

Query: 66  ------GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
                  I  I+G +L         +    K        IV+
Sbjct: 58  LKKYWDDIIVIVGVELTHIPP--KSIPKMAKKAKDLGAEIVV 97


>gi|330506782|ref|YP_004383210.1| PHP domain/helix-hairpin-helix motif protein [Methanosaeta concilii
           GP-6]
 gi|328927590|gb|AEB67392.1| PHP domain/helix-hairpin-helix motif protein [Methanosaeta concilii
           GP-6]
          Length = 577

 Score = 45.2 bits (105), Expect = 0.060,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 16/95 (16%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSA---------LEFSQK 61
           L VHS +S  +G  S+  +     +     IA++D +    +            +E   +
Sbjct: 345 LHVHSIWS--DGRASIIELAQAARSLGYEYIALSDHSPSVGIAGGIGREKMEEKIEAVAE 402

Query: 62  ACA--AGIQPIIGCQLDIDMQDNLKMTNQGKTPFP 94
           A     GI  ++G ++DI    +L   +       
Sbjct: 403 ANDSLEGITVLMGAEVDIKADGSLDYPDDLLERMD 437


>gi|254294841|ref|YP_003060864.1| PHP domain protein [Hirschia baltica ATCC 49814]
 gi|254043372|gb|ACT60167.1| PHP domain protein [Hirschia baltica ATCC 49814]
          Length = 379

 Score = 45.2 bits (105), Expect = 0.061,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+ +S  +GA+  +  +++   D   A+AIT+ 
Sbjct: 43 LHTHTVFS--DGAVWPSIRVEEAHRDGLDALAITEH 76


>gi|91200048|emb|CAJ73090.1| conserved hypothetical protein [Candidatus Kuenenia
          stuttgartiensis]
          Length = 213

 Score = 45.2 bits (105), Expect = 0.061,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+ +S  +G L  + ++ +        +AITD 
Sbjct: 4  LHTHTLFS--DGVLLPSELIRRCEVKGFRGLAITDH 37


>gi|329117808|ref|ZP_08246525.1| comEA protein [Streptococcus parauberis NCFD 2020]
 gi|326908213|gb|EGE55127.1| comEA protein [Streptococcus parauberis NCFD 2020]
          Length = 225

 Score = 45.2 bits (105), Expect = 0.062,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLE 883
           L  I G+G   A  I+EA      F SLED         + ++ LE
Sbjct: 174 LTKIPGIGEKRAHEIIEARDKMGGFKSLEDL---TKISGIGKKTLE 216


>gi|253826950|ref|ZP_04869835.1| hypothetical protein HCAN_0297 [Helicobacter canadensis MIT
           98-5491]
 gi|253510356|gb|EES89015.1| hypothetical protein HCAN_0297 [Helicobacter canadensis MIT
           98-5491]
          Length = 82

 Score = 45.2 bits (105), Expect = 0.062,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDF 868
           L +IKG+G   A+ I++     PF S++D 
Sbjct: 28  LMSIKGIGEAKAQAIIDYREKTPFKSIDDL 57


>gi|224419232|ref|ZP_03657238.1| competence protein ComEA helix-hairpin-helix region [Helicobacter
           canadensis MIT 98-5491]
          Length = 67

 Score = 45.2 bits (105), Expect = 0.062,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDF 868
           L +IKG+G   A+ I++     PF S++D 
Sbjct: 28  LMSIKGIGEAKAQAIIDYREKTPFKSIDDL 57


>gi|262340925|ref|YP_003283780.1| ATP-dependent DNA helicase RecG [Blattabacterium sp. (Blattella
            germanica) str. Bge]
 gi|262272262|gb|ACY40170.1| ATP-dependent DNA helicase RecG [Blattabacterium sp. (Blattella
            germanica) str. Bge]
          Length = 686

 Score = 45.2 bits (105), Expect = 0.063,   Method: Composition-based stats.
 Identities = 7/53 (13%), Positives = 18/53 (33%), Gaps = 1/53 (1%)

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +K   E       N +++   + + ++   +KG         +     E  +F
Sbjct: 50   LKNISELSKNNNNNFVKILGEITNIEEINYKKGKIW-IARLEDKTGFIELVWF 101


>gi|322417835|ref|YP_004197058.1| PHP domain-containing protein [Geobacter sp. M18]
 gi|320124222|gb|ADW11782.1| PHP domain protein [Geobacter sp. M18]
          Length = 576

 Score = 45.2 bits (105), Expect = 0.063,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS +S  +GA S+ ++ +         IA+TD 
Sbjct: 340 LHVHSKWS--DGAHSIADLAEAARQSGLSYIAVTDH 373


>gi|320536339|ref|ZP_08036381.1| PHP domain protein [Treponema phagedenis F0421]
 gi|320146820|gb|EFW38394.1| PHP domain protein [Treponema phagedenis F0421]
          Length = 308

 Score = 45.2 bits (105), Expect = 0.063,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 6/52 (11%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           L  H++ S  +G+L++  + D + AD   A A+TD N +       +KA +
Sbjct: 6  ELHNHTNES--DGSLTVEELTDFMVADTVDAFALTDHNTISG----HKKAQS 51


>gi|134299491|ref|YP_001112987.1| phosphotransferase domain-containing protein [Desulfotomaculum
           reducens MI-1]
 gi|134052191|gb|ABO50162.1| PHP C-terminal domain protein [Desulfotomaculum reducens MI-1]
          Length = 569

 Score = 45.2 bits (105), Expect = 0.063,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  + AL +++I+++         AITD 
Sbjct: 340 LHIHTTWS--DSALEIDDIINRCREKGYSYAAITDH 373


>gi|85059381|ref|YP_455083.1| hypothetical protein SG1403 [Sodalis glossinidius str.
          'morsitans']
 gi|84779901|dbj|BAE74678.1| conserved hypothetical protein [Sodalis glossinidius str.
          'morsitans']
          Length = 297

 Score = 45.2 bits (105), Expect = 0.066,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 9/55 (16%)

Query: 2  TQYLEKSPSFVHLQV----HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           Q +  +     L+V    HS  +  +G L    ++ +        +AITD + +
Sbjct: 3  AQPMTTA-----LRVIYDLHSHTTSSDGLLKPRELVVRAHGMGVDVLAITDHDTV 52


>gi|159903425|ref|YP_001550769.1| metal-dependent phosphoesterase [Prochlorococcus marinus str. MIT
          9211]
 gi|159888601|gb|ABX08815.1| Predicted metal-dependent phosphoesterase (PHP family)
          [Prochlorococcus marinus str. MIT 9211]
          Length = 217

 Score = 45.2 bits (105), Expect = 0.066,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 14 LQVHSSYSLL-EGALSLNNILDKIAADQQPAIAITDTNNL 52
          L  H+   LL +G+LS   ++ +  +     IA+TD + +
Sbjct: 26 LHCHT---LLSDGSLSPIELISQAYSIGLRHIAVTDHHTV 62


>gi|330823717|ref|YP_004387020.1| PHP domain-containing protein [Alicycliphilus denitrificans K601]
 gi|329309089|gb|AEB83504.1| PHP domain protein [Alicycliphilus denitrificans K601]
          Length = 322

 Score = 45.2 bits (105), Expect = 0.067,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS  S  +G L+   +  +  A+     A+TD +
Sbjct: 38 LHCHSVVS--DGTLTPEQLAARAHANGVQLWALTDHD 72


>gi|313673816|ref|YP_004051927.1| php domain protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940572|gb|ADR19764.1| PHP domain protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 220

 Score = 45.2 bits (105), Expect = 0.068,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 17/99 (17%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT----NNLFSALE--------FSQK 61
           L  H+++S  +G L       +        IAITD     N LF  LE        F++ 
Sbjct: 4   LHTHTTFS--DGVLIPAESCRRAKVAGYQGIAITDHADESNFLF-LLEKQLKFKEDFNKS 60

Query: 62  ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           +     + I+G +    + D++    +          +V
Sbjct: 61  SKD--FKVIVGLEFTHVLPDHIGRMTEIARKNGADIILV 97


>gi|168181055|ref|ZP_02615719.1| PHP domain protein [Clostridium botulinum NCTC 2916]
 gi|182668161|gb|EDT80140.1| PHP domain protein [Clostridium botulinum NCTC 2916]
          Length = 225

 Score = 45.2 bits (105), Expect = 0.068,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 15 QVH-SSYSLLEGALSLNNILDKIAADQQPAIAITDTNN---LFSALEFSQKACAAGIQPI 70
           +H S YS L+  +SL  I+ K        + ITD  +   +    E    + A G   +
Sbjct: 6  HIHESKYS-LDSEISLEEIVKKGKEIGLDGVCITDHESSDIM---DEAHAYSKATGFLIL 61

Query: 71 IGCQL 75
          +G ++
Sbjct: 62 VGAEI 66


>gi|150403178|ref|YP_001330472.1| phosphotransferase domain-containing protein [Methanococcus
          maripaludis C7]
 gi|150034208|gb|ABR66321.1| PHP domain protein [Methanococcus maripaludis C7]
          Length = 299

 Score = 45.2 bits (105), Expect = 0.068,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 15/73 (20%)

Query: 15 QVHSSYSLLEGALS---------LNN---ILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
           +H+ YS   G +          +     +L    A+    IA+TD N +  ALE  +  
Sbjct: 11 HIHTKYS---GMMKYMGLKFPDSVEEPLKVLKCAKANNMDIIAVTDHNTIKGALETKKYE 67

Query: 63 CAAGIQPIIGCQL 75
             GI+ ++G ++
Sbjct: 68 KEFGIEVVVGSEI 80


>gi|298246013|ref|ZP_06969819.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297553494|gb|EFH87359.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 589

 Score = 44.8 bits (104), Expect = 0.069,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS+YS  +G  +L  +++         + ITD 
Sbjct: 350 LHAHSTYS--DGQKTLREMVEGCIERGYSYLGITDH 383


>gi|226330255|ref|ZP_03805773.1| hypothetical protein PROPEN_04168 [Proteus penneri ATCC 35198]
 gi|225201050|gb|EEG83404.1| hypothetical protein PROPEN_04168 [Proteus penneri ATCC 35198]
          Length = 91

 Score = 44.8 bits (104), Expect = 0.069,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          L  H++ S  +G LS   ++D+    Q   +AITD +   + 
Sbjct: 14 LHSHTTAS--DGELSPEELVDRAIERQINVLAITDHDTTAAI 53


>gi|217076982|ref|YP_002334698.1| PHP domain protein [Thermosipho africanus TCF52B]
 gi|217036835|gb|ACJ75357.1| PHP domain protein [Thermosipho africanus TCF52B]
          Length = 266

 Score = 44.8 bits (104), Expect = 0.069,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 59/161 (36%), Gaps = 17/161 (10%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            +HS+ S  +G  + N ++  +   +    ++TD + +       ++        I G +
Sbjct: 6   HMHSTAS--DGTFNPNELVTLVKERKIECFSLTDHDTIDGV----KQIKEKNF--IPGVE 57

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVL--LVSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
           + I+    L +   G        + VL  L      Y+R +++V +   L        I 
Sbjct: 58  ISIEHPTTLHILGYGFDINNEKFNKVLDQLKQYR--YERNVKMVEKANALGFD-----IT 110

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
           L  L E     LI     +S  + + +  +  +  EK L  
Sbjct: 111 LEELLEEANGTLIGRPHFASLLLKKGYVKDRKEAFEKYLKR 151


>gi|167570497|ref|ZP_02363371.1| hypothetical protein BoklC_11679 [Burkholderia oklahomensis
          C6786]
          Length = 279

 Score = 44.8 bits (104), Expect = 0.069,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS--ALEFSQKACAAGIQPII 71
          L  HS+ S  +G LS  ++  +  A      A+TD + +    A    + A A G++ + 
Sbjct: 8  LHCHSNVS--DGQLSPADVARRAHAGGVTLWALTDHDEVGGQRAAR--ETAEALGMRYLH 63

Query: 72 GCQLDIDMQDN 82
          G ++ +     
Sbjct: 64 GVEISVTWASR 74


>gi|284162334|ref|YP_003400957.1| hypothetical protein Arcpr_1232 [Archaeoglobus profundus DSM 5631]
 gi|284012331|gb|ADB58284.1| Protein of unknown function DUF655 [Archaeoglobus profundus DSM
           5631]
          Length = 192

 Score = 44.8 bits (104), Expect = 0.070,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
           L  + GVG  T   I+E    +PF S ED   R+    +
Sbjct: 131 LELLPGVGKKTMWAIIEERKKEPFKSFEDIAKRIKIDPV 169


>gi|147679065|ref|YP_001213280.1| PHP family histidinol phosphatase/hydrolase [Pelotomaculum
          thermopropionicum SI]
 gi|146275162|dbj|BAF60911.1| histidinol phosphatase and related hydrolases of the PHP family
          [Pelotomaculum thermopropionicum SI]
          Length = 244

 Score = 44.8 bits (104), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 18/84 (21%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN------NLFSALEFSQKACA--AG 66
            H+++S  +G  +  + +   A     A+AITD         +    E         AG
Sbjct: 8  HTHTTHS--DGRGTPADNIRAAAGRGLKALAITDHGPKSVGIGVAG-PETFLAIKEEVAG 64

Query: 67 IQP-------IIGCQLDIDMQDNL 83
          + P       ++G +  +  +D  
Sbjct: 65 LAPGFPEMEVLVGAEASVIGRDGR 88


>gi|119469323|ref|ZP_01612262.1| hypothetical protein ATW7_07719 [Alteromonadales bacterium TW-7]
 gi|119447187|gb|EAW28456.1| hypothetical protein ATW7_07719 [Alteromonadales bacterium TW-7]
          Length = 284

 Score = 44.8 bits (104), Expect = 0.071,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ--PII 71
          L  H+++S  +G L++  +L++         AITD + + +         +  +    I 
Sbjct: 6  LHSHTTHS--DGHLTVEELLNRAVDKNINVFAITDHDTVAAIKPAQSFIKSENLPLSLIT 63

Query: 72 GCQLDIDMQD 81
          G ++    + 
Sbjct: 64 GTEISTKWES 73


>gi|51894035|ref|YP_076726.1| DNA-dependent DNA polymerase family X protein [Symbiobacterium
           thermophilum IAM 14863]
 gi|51857724|dbj|BAD41882.1| DNA-dependent DNA polymerase family X [Symbiobacterium thermophilum
           IAM 14863]
          Length = 555

 Score = 44.8 bits (104), Expect = 0.071,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 15/88 (17%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN-NL---FSA----LEFSQKACAA 65
           L VH++ S  +G   L  + +   A     +A+ D + +L          L     A   
Sbjct: 324 LHVHTAAS--DGTAGLAEMAEAARALGHRYLAVCDHSQSLHVAHGLSPERLREHVAAIRR 381

Query: 66  -----GIQPIIGCQLDIDMQDNLKMTNQ 88
                  + + G ++DI     L   ++
Sbjct: 382 LDQWPDFRLLAGAEVDILRDGTLDYPDE 409


>gi|158333742|ref|YP_001514914.1| phospholipase D/transphosphatidylase [Acaryochloris marina
           MBIC11017]
 gi|158303983|gb|ABW25600.1| phospholipase D/Transphosphatidylase [Acaryochloris marina
           MBIC11017]
          Length = 562

 Score = 44.8 bits (104), Expect = 0.072,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L A+ GVG   A  I+E   ++ F SL DF        +  ++LE L
Sbjct: 513 LEALPGVGPKLAARIIEVRQERLFTSLADFDQ---VPGIGPKLLEQL 556


>gi|52786737|ref|YP_092566.1| hypothetical protein BLi03006 [Bacillus licheniformis ATCC 14580]
 gi|163119581|ref|YP_080151.2| hypothetical protein BL00334 [Bacillus licheniformis ATCC 14580]
 gi|52349239|gb|AAU41873.1| YshC [Bacillus licheniformis ATCC 14580]
 gi|145903091|gb|AAU24513.2| putative DNA polymerase YshC [Bacillus licheniformis ATCC 14580]
          Length = 571

 Score = 44.8 bits (104), Expect = 0.072,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +   A     +AITD 
Sbjct: 338 LHMHSAWS--DGAFSIREMAEACMAKGYRYMAITDH 371


>gi|328912883|gb|AEB64479.1| DNA polymerase (family X) [Bacillus amyloliquefaciens LL3]
          Length = 570

 Score = 44.8 bits (104), Expect = 0.072,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +   A     +AITD 
Sbjct: 338 LHMHSAWS--DGAFSIREMAEACMAKGYQYMAITDH 371


>gi|27467754|ref|NP_764391.1| hypothetical protein SE0836 [Staphylococcus epidermidis ATCC 12228]
 gi|293366875|ref|ZP_06613551.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|27315298|gb|AAO04433.1|AE016746_223 DNA-dependent DNA polymerase beta chain [Staphylococcus epidermidis
           ATCC 12228]
 gi|291319176|gb|EFE59546.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329734426|gb|EGG70739.1| PHP domain protein [Staphylococcus epidermidis VCU045]
 gi|329736264|gb|EGG72536.1| PHP domain protein [Staphylococcus epidermidis VCU028]
          Length = 569

 Score = 44.8 bits (104), Expect = 0.072,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H++YS  +GA S+  +++         + ITD 
Sbjct: 336 LHMHTTYS--DGAFSIKEMIEANIEKGYEFMVITDH 369


>gi|114566632|ref|YP_753786.1| DNA-dependent DNA polymerase family X protein [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114337567|gb|ABI68415.1| DNA-dependent DNA polymerase family X [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 557

 Score = 44.8 bits (104), Expect = 0.072,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS +S  +GA  + +++          +AIT+ 
Sbjct: 326 LHTHSRWS--DGAHDIEDMVQAAKDSGYSYLAITEH 359


>gi|251810591|ref|ZP_04825064.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|251805751|gb|EES58408.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus
           epidermidis BCM-HMP0060]
          Length = 569

 Score = 44.8 bits (104), Expect = 0.073,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H++YS  +GA S+  +++         + ITD 
Sbjct: 336 LHMHTTYS--DGAFSIKEMIEANIEKGYEFMVITDH 369


>gi|124003545|ref|ZP_01688394.1| DNA polymerase IV [Microscilla marina ATCC 23134]
 gi|123991114|gb|EAY30566.1| DNA polymerase IV [Microscilla marina ATCC 23134]
          Length = 567

 Score = 44.8 bits (104), Expect = 0.073,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS+YS  +G  +L  +   +       + ITD 
Sbjct: 330 LHAHSTYS--DGKNTLEEMALAVKNAGYEYLGITDH 363


>gi|28212115|ref|NP_783059.1| putative DNA polymerase beta [Clostridium tetani E88]
 gi|28204558|gb|AAO36996.1| putative DNA polymerase beta [Clostridium tetani E88]
          Length = 253

 Score = 44.8 bits (104), Expect = 0.073,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 16/80 (20%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL---FSA-----------LEFSQ 60
            H+ +S   G  ++ + +          IAITD   L   +             ++F +
Sbjct: 8  HTHTKFS--HGVGTIEDNIQIAIKKGLKTIAITDHGPLLSNYGININEFDKIQEEIKFLR 65

Query: 61 KACAAGIQPIIGCQLDIDMQ 80
          +     I  ++G + +I  +
Sbjct: 66 EKYEKNINILLGIEANIIDK 85


>gi|319764019|ref|YP_004127956.1| php domain protein [Alicycliphilus denitrificans BC]
 gi|317118580|gb|ADV01069.1| PHP domain protein [Alicycliphilus denitrificans BC]
          Length = 293

 Score = 44.8 bits (104), Expect = 0.074,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS  S  +G L+   +  +  A+     A+TD +
Sbjct: 9  LHCHSVVS--DGTLTPEQLAARAHANGVQLWALTDHD 43


>gi|300311698|ref|YP_003775790.1| DNA polymerase IV protein [Herbaspirillum seropedicae SmR1]
 gi|300074483|gb|ADJ63882.1| DNA polymerase IV protein [Herbaspirillum seropedicae SmR1]
          Length = 593

 Score = 44.8 bits (104), Expect = 0.074,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VH+ Y   +G  ++  +    A      IAITD 
Sbjct: 341 LHVHTHY--PDGKNTIIEMASTAALLGLEYIAITDH 374


>gi|282876409|ref|ZP_06285276.1| PHP domain protein [Staphylococcus epidermidis SK135]
 gi|281295434|gb|EFA87961.1| PHP domain protein [Staphylococcus epidermidis SK135]
          Length = 569

 Score = 44.8 bits (104), Expect = 0.074,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H++YS  +GA S+  +++         + ITD 
Sbjct: 336 LHMHTTYS--DGAFSIKEMIEANIEKGYEFMVITDH 369


>gi|218961480|ref|YP_001741255.1| predicted metal-dependent phosphoesterase (PHP family)
          [Candidatus Cloacamonas acidaminovorans]
 gi|167730137|emb|CAO81049.1| predicted metal-dependent phosphoesterase (PHP family)
          [Candidatus Cloacamonas acidaminovorans]
          Length = 245

 Score = 44.8 bits (104), Expect = 0.074,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 14 LQVHSSYSLLEGA-LSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-ACAAGI 67
          L +HS  S   G  +S N+I+ ++       +AITD N++ +     QK A   G+
Sbjct: 8  LHIHSVLSPCGGLEMSPNSIMQRLKQFGIQWLAITDHNSMANCP-AYQKVAEKEGL 62


>gi|308174556|ref|YP_003921261.1| YshC [Bacillus amyloliquefaciens DSM 7]
 gi|307607420|emb|CBI43791.1| YshC [Bacillus amyloliquefaciens DSM 7]
          Length = 582

 Score = 44.8 bits (104), Expect = 0.075,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +   A     +AITD 
Sbjct: 350 LHMHSAWS--DGAFSIREMAEACMAKGYQYMAITDH 383


>gi|269987017|gb|EEZ93292.1| PHP domain protein [Candidatus Parvarchaeum acidiphilum ARMAN-4]
          Length = 568

 Score = 44.8 bits (104), Expect = 0.075,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 15/94 (15%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN-NL---FSA--LEFSQKACA--- 64
           L VH+  S  +G  SL  + +         +A+T+ + +L          F +       
Sbjct: 340 LHVHTKDS--DGVNSLEEMAEAAKKRGLKYLALTNHSKSLRVAHGLDDKRFLELNKKIEK 397

Query: 65  ---AG-IQPIIGCQLDIDMQDNLKMTNQGKTPFP 94
               G I+ + G +L+I    +L + +     F 
Sbjct: 398 FTEKGSIKLLKGVELEILKDGSLDLKDDSLKQFD 431


>gi|121595727|ref|YP_987623.1| phosphotransferase domain-containing protein [Acidovorax sp.
          JS42]
 gi|222111933|ref|YP_002554197.1| php domain-containing protein [Acidovorax ebreus TPSY]
 gi|120607807|gb|ABM43547.1| PHP C-terminal domain protein [Acidovorax sp. JS42]
 gi|221731377|gb|ACM34197.1| PHP domain protein [Acidovorax ebreus TPSY]
          Length = 292

 Score = 44.8 bits (104), Expect = 0.075,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 4/38 (10%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAI-AITDTN 50
          L  HS  S  +G L+   +  +  A+   A+ A+TD +
Sbjct: 9  LHCHSVVS--DGTLTPEALAARAHANGV-ALWALTDHD 43


>gi|328554479|gb|AEB24971.1| hypothetical protein BAMTA208_14050 [Bacillus amyloliquefaciens
           TA208]
          Length = 570

 Score = 44.8 bits (104), Expect = 0.076,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +   A     +AITD 
Sbjct: 338 LHMHSAWS--DGAFSIREMAEACMAKGYQYMAITDH 371


>gi|289191845|ref|YP_003457786.1| PHP domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938295|gb|ADC69050.1| PHP domain protein [Methanocaldococcus sp. FS406-22]
          Length = 218

 Score = 44.8 bits (104), Expect = 0.076,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 25/102 (24%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--SQK-------ACAA 65
             H+ +S  +G L    ++ +    +  AIAITD        +F   ++       A   
Sbjct: 6   HTHTIFS--DGELIPAELVRRARVLKHKAIAITDHA------DFSNYKELIEKTTIAKEE 57

Query: 66  ------GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
                  I  I+G +L         +    K        IV+
Sbjct: 58  LKKYWDDIIVIVGVELTHIPP--KSIPKMAKKAKDLGAEIVV 97


>gi|111220663|ref|YP_711457.1| aspartate tRNA synthetase [Frankia alni ACN14a]
 gi|111148195|emb|CAJ59864.1| aspartate tRNA synthetase [Frankia alni ACN14a]
          Length = 618

 Score = 44.8 bits (104), Expect = 0.077,   Method: Composition-based stats.
 Identities = 7/55 (12%), Positives = 17/55 (30%), Gaps = 4/55 (7%)

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             M      +  A   G  + +   V  ++Q     G  + +V   + +   +   
Sbjct: 27   AMRTHLCADLRADHVGRTVSVCGWVAHRRQH----GQSLTFVDLRDHSGLLQVVV 77


>gi|327399483|ref|YP_004340352.1| PHP domain-containing protein [Hippea maritima DSM 10411]
 gi|327182112|gb|AEA34293.1| PHP domain protein [Hippea maritima DSM 10411]
          Length = 224

 Score = 44.8 bits (104), Expect = 0.078,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 8/47 (17%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          L  H+ +S  +G L  + +  +       AIA TD       ++FS 
Sbjct: 4  LHTHTLFS--DGELIPSELARRAKDIGYRAIAFTDH------VDFSN 42


>gi|254251990|ref|ZP_04945308.1| Phosphoesterase PHP [Burkholderia dolosa AUO158]
 gi|124894599|gb|EAY68479.1| Phosphoesterase PHP [Burkholderia dolosa AUO158]
          Length = 279

 Score = 44.8 bits (104), Expect = 0.078,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS--ALEFSQKACAAGIQPII 71
           L  HS+ S  +G LS  ++  +  A      A+TD + +    A     +A A G++ + 
Sbjct: 8   LHCHSNVS--DGLLSPVDVARRAHAGGVTLWALTDHDEIGGQAAAR--SEAEALGMRYLC 63

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           G ++ +           G    P  P++V
Sbjct: 64  GVEISVTWASRTVHIV-GLNVDPANPALV 91


>gi|126180378|ref|YP_001048343.1| phosphotransferase domain-containing protein [Methanoculleus
           marisnigri JR1]
 gi|125863172|gb|ABN58361.1| PHP C-terminal domain protein [Methanoculleus marisnigri JR1]
          Length = 288

 Score = 44.8 bits (104), Expect = 0.079,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 9/87 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ--PII 71
           L  H+ +S  +    + + L   A      +AITD N +        +A   GI+   + 
Sbjct: 27  LHFHTRHS--DSPTRVRDALKLAARRGI-GLAITDHNQVGGV----SEAERQGIRVPLVP 79

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPS 98
           G ++  +   ++ +     +       
Sbjct: 80  GIEVSANDGPHILLYFYSASDLRDFYR 106


>gi|172058181|ref|YP_001814641.1| hypothetical protein Exig_2172 [Exiguobacterium sibiricum 255-15]
 gi|171990702|gb|ACB61624.1| PHP domain protein [Exiguobacterium sibiricum 255-15]
          Length = 571

 Score = 44.8 bits (104), Expect = 0.080,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H+++S  +G LS++ ++D  AA     +AITD 
Sbjct: 336 HMHTTWS--DGTLSVDELVDACAARGYSWMAITDH 368


>gi|317493784|ref|ZP_07952201.1| PHP domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918111|gb|EFV39453.1| PHP domain-containing protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 299

 Score = 44.8 bits (104), Expect = 0.081,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 12/92 (13%)

Query: 14  LQVHSSYSLLEGALSL-NNILDKIAADQQPAIAITDTNNLFSALEFSQKAC----AAGIQ 68
           L +HS YS  + A      ++ +   +    +A+TD N+   A  F++       +  I 
Sbjct: 6   LHMHSHYS--DDADYPVAELIARCLREGVTTLAVTDHNS---AFSFAESIKWRSDSLNI- 59

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
            I G ++D   Q                 S+V
Sbjct: 60  -ISGIEIDCTFQGRNFHLLGYGFTPSDDFSLV 90


>gi|167587018|ref|ZP_02379406.1| hypothetical protein BuboB_16872 [Burkholderia ubonensis Bu]
          Length = 112

 Score = 44.8 bits (104), Expect = 0.083,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L ++KG+G   ++ I++    + PF   +D  +RV  K L  + +  L
Sbjct: 33  ALESVKGLGPVKSKAIIDERTKNGPFKDADDLANRV--KGLGTKSVAHL 79


>gi|218247571|ref|YP_002372942.1| PHP domain-containing protein [Cyanothece sp. PCC 8801]
 gi|257061096|ref|YP_003138984.1| PHP domain protein [Cyanothece sp. PCC 8802]
 gi|218168049|gb|ACK66786.1| PHP domain protein [Cyanothece sp. PCC 8801]
 gi|256591262|gb|ACV02149.1| PHP domain protein [Cyanothece sp. PCC 8802]
          Length = 230

 Score = 44.8 bits (104), Expect = 0.083,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
           +H++ S  +G L   +++++  A     +AITD +++  
Sbjct: 36 HMHTTCS--DGQLRPKSLIEQAIAIGLKGLAITDHHSING 73


>gi|310820750|ref|YP_003953108.1| hypothetical protein STAUR_3491 [Stigmatella aurantiaca DW4/3-1]
 gi|309393822|gb|ADO71281.1| conserved uncharacterized protein [Stigmatella aurantiaca
          DW4/3-1]
          Length = 272

 Score = 44.8 bits (104), Expect = 0.084,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          L  H++ S  +G  S   +L   A+     +A+TD + +   
Sbjct: 4  LHSHTTAS--DGQHSPEELLALAASAGVTVLAVTDHDTVAGL 43


>gi|283778801|ref|YP_003369556.1| PHP domain-containing protein [Pirellula staleyi DSM 6068]
 gi|283437254|gb|ADB15696.1| PHP domain protein [Pirellula staleyi DSM 6068]
          Length = 578

 Score = 44.8 bits (104), Expect = 0.086,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+  +  +G  S++ +     A     IAITD 
Sbjct: 346 LHMHT--TATDGNNSIDEMATAARARGMQYIAITDH 379


>gi|282857613|ref|ZP_06266831.1| HD domain protein [Pyramidobacter piscolens W5455]
 gi|282584551|gb|EFB89901.1| HD domain protein [Pyramidobacter piscolens W5455]
          Length = 348

 Score = 44.8 bits (104), Expect = 0.086,   Method: Composition-based stats.
 Identities = 7/55 (12%), Positives = 20/55 (36%)

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            M  K   E  A    +  +   +V   ++K+ +       ++  + +   +A  +
Sbjct: 1    MSNKTLAEVRALPVDSKFQSVGLVTELKEKRDKNDKPYWIMSVMDKSGVLDAKVW 55


>gi|154492140|ref|ZP_02031766.1| hypothetical protein PARMER_01772 [Parabacteroides merdae ATCC
          43184]
 gi|154087365|gb|EDN86410.1| hypothetical protein PARMER_01772 [Parabacteroides merdae ATCC
          43184]
          Length = 246

 Score = 44.8 bits (104), Expect = 0.086,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 14 LQVHSSYSLLEGA-LSLNNILDKIAADQQPAIAITDTNN 51
          L +H+  S      +S   I++        AIA+TD N+
Sbjct: 8  LHLHTCLSPCGSLEMSPQRIVETALERGLDAIAVTDHNS 46


>gi|300871713|ref|YP_003786586.1| putative hydrolase [Brachyspira pilosicoli 95/1000]
 gi|300689414|gb|ADK32085.1| putative hydrolase [Brachyspira pilosicoli 95/1000]
          Length = 237

 Score = 44.8 bits (104), Expect = 0.086,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 29/94 (30%)

Query: 14 LQVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTN-------------NLFSA 55
          L  H+     ++S      +++ I++        A+AITD               ++ + 
Sbjct: 7  LHTHTIVSQHAFS------TVDEIINAAKDKGFLAVAITDHGPKSSDGAKPVHFRSMHNI 60

Query: 56 LEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQG 89
           E        GI+ + G + +I   D      + 
Sbjct: 61 PE-YV----NGIRVLRGAEANIIDYDGNIDLRKN 89


>gi|254785513|ref|YP_003072942.1| DNA uptake protein ComEA [Teredinibacter turnerae T7901]
 gi|237684182|gb|ACR11446.1| DNA uptake protein ComEA [Teredinibacter turnerae T7901]
          Length = 119

 Score = 44.8 bits (104), Expect = 0.086,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 7/49 (14%)

Query: 842 IKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLE---SLV 886
           +KG+G   A+ I+     +  F S++D  +    K + +  LE   SL+
Sbjct: 72  LKGIGLKKAQAIVAYREKNGKFKSMDDLLA---VKGVGKATLEKNKSLI 117


>gi|171322307|ref|ZP_02911139.1| PHP domain protein [Burkholderia ambifaria MEX-5]
 gi|171092369|gb|EDT37730.1| PHP domain protein [Burkholderia ambifaria MEX-5]
          Length = 276

 Score = 44.8 bits (104), Expect = 0.086,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS--ALEFSQKACAAGIQPII 71
           L  HS+ S  +G LS  ++  +  A      A+TD + +    A     +A A G++ + 
Sbjct: 5   LHCHSNVS--DGLLSPADVARRAHAGGVTLWALTDHDEIGGQAAAR--SEAQALGMRYLS 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           G ++ +           G    P+ P+++
Sbjct: 61  GVEISVTWASRTVHIV-GLHIDPSNPTLI 88


>gi|154686994|ref|YP_001422155.1| hypothetical protein RBAM_025660 [Bacillus amyloliquefaciens FZB42]
 gi|154352845|gb|ABS74924.1| YshC [Bacillus amyloliquefaciens FZB42]
          Length = 570

 Score = 44.8 bits (104), Expect = 0.086,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +   A     +AITD 
Sbjct: 338 LHMHSAWS--DGAFSIREMAEACMAKGYQYMAITDH 371


>gi|218709946|ref|YP_002417567.1| hypothetical protein VS_1964 [Vibrio splendidus LGP32]
 gi|218322965|emb|CAV19142.1| hypothetical metal-dependent phosphoesterase YciV [Vibrio
           splendidus LGP32]
          Length = 307

 Score = 44.8 bits (104), Expect = 0.087,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 87/283 (30%), Gaps = 55/283 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H++ S  +G L+   ++D+        +AITD +      E           IQ I 
Sbjct: 28  LHSHTTAS--DGRLTPPELIDRALGFNIEVLAITDHDTTDGLAEARSYIADNNLPIQLIN 85

Query: 72  GCQ--------------LDIDMQDNLKMTNQGKTPFPTVPSIVLLVS-----TAEGYQRL 112
           G +              L++D +         +     V    ++       T EG    
Sbjct: 86  GIEISTVWQNKDIHIVGLNVDPESPELKALIEQQKQHRVGRAEMIAQRLEKATREGVLEE 145

Query: 113 IEL------VSRMY----LLDQGKQSV--RICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
           ++L      ++R +    L+D G      ++   +L      G +  T  S      A  
Sbjct: 146 VKLIAGDAPITRAHFAKWLVDNGYAKTMQQVFKKFLTR-NNPGYVPPTWCSMSDAVTAIH 204

Query: 161 FNS--------------SQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYT 206
                            ++  ++ L  F +  GD   + + + +   + R   +   A  
Sbjct: 205 AAGGQAVLAHPARYGLTAKWVKRLLAAFVEANGDA--MEVAQPQQAQQER-RTLADYAIQ 261

Query: 207 HELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVT 249
           +   L+A+  S F     +      + +        KD    T
Sbjct: 262 Y--KLLASQGSDFHYPSPWMELGRNLWLPSGVEEVWKDWEFQT 302


>gi|194017065|ref|ZP_03055677.1| DNA polymerase beta [Bacillus pumilus ATCC 7061]
 gi|194010933|gb|EDW20503.1| DNA polymerase beta [Bacillus pumilus ATCC 7061]
          Length = 570

 Score = 44.8 bits (104), Expect = 0.087,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 9/46 (19%)

Query: 11  FVHL-------QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           FV L        +HS++S  +GA S+  + +   A     +AITD 
Sbjct: 328 FVELKDIKGDLHMHSTWS--DGAFSIREMAEACIAKGYEYMAITDH 371


>gi|297518504|ref|ZP_06936890.1| hypothetical protein EcolOP_12758 [Escherichia coli OP50]
          Length = 280

 Score = 44.8 bits (104), Expect = 0.088,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 24 EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPIIGCQLDIDMQD 81
          +G L+   ++ +    +   +AITD +   +     ++   +G  +  I G ++    ++
Sbjct: 7  DGCLTPEALVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIPGVEISTVWEN 66

Query: 82 N 82
          +
Sbjct: 67 H 67


>gi|253583381|ref|ZP_04860579.1| histidinol-phosphatase [Fusobacterium varium ATCC 27725]
 gi|251833953|gb|EES62516.1| histidinol-phosphatase [Fusobacterium varium ATCC 27725]
          Length = 267

 Score = 44.8 bits (104), Expect = 0.088,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +HS +S  +   +++ ++ K  +     IAITD 
Sbjct: 7  HLHSEFS-GDSIQNIDELILKAISMGIEEIAITDH 40


>gi|157693277|ref|YP_001487739.1| hypothetical protein BPUM_2517 [Bacillus pumilus SAFR-032]
 gi|157682035|gb|ABV63179.1| DNA polymerase beta [Bacillus pumilus SAFR-032]
          Length = 570

 Score = 44.8 bits (104), Expect = 0.088,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 9/46 (19%)

Query: 11  FVHL-------QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           FV L        +HS++S  +GA S+  + +   A     +AITD 
Sbjct: 328 FVELRDIKGDLHMHSTWS--DGAFSIREMAEACIAKGYEYMAITDH 371


>gi|52548908|gb|AAU82757.1| DNA-directed DNA polymerase, subunit 1 [uncultured archaeon
            GZfos19C8]
          Length = 492

 Score = 44.8 bits (104), Expect = 0.089,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 4/56 (7%)

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            R++                + +  MV S    KT KG+    V   +P+       
Sbjct: 127  RRISCGQIRYIKDRREKEEVSIVGMVSSIN--KTAKGN--TRVDLEDPSGNMSVIL 178


>gi|224825434|ref|ZP_03698539.1| PHP domain protein [Lutiella nitroferrum 2002]
 gi|224602355|gb|EEG08533.1| PHP  domain protein [Lutiella nitroferrum 2002]
          Length = 573

 Score = 44.8 bits (104), Expect = 0.090,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS  S  +G  S+ ++     A     +AITD 
Sbjct: 342 LHTHSVAS--DGQNSIKDMALAAHALGLVYLAITDH 375


>gi|323698029|ref|ZP_08109941.1| PHP domain protein [Desulfovibrio sp. ND132]
 gi|323457961|gb|EGB13826.1| PHP domain protein [Desulfovibrio desulfuricans ND132]
          Length = 216

 Score = 44.4 bits (103), Expect = 0.091,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 16/74 (21%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT---NNLF----SALEFSQKACAAG 66
          L  H+ +S  +G L    ++ +       AI +TD      ++    + L F       G
Sbjct: 4  LHTHTIFS--DGELIPAELVRRAEVIGYKAICMTDHADEATMYHALENVLRFV---KKHG 58

Query: 67 ----IQPIIGCQLD 76
              I  + G +L 
Sbjct: 59 HFFDINVLAGVELT 72


>gi|311111791|ref|YP_003983013.1| PHP domain-containing protein [Rothia dentocariosa ATCC 17931]
 gi|310943285|gb|ADP39579.1| PHP domain protein [Rothia dentocariosa ATCC 17931]
          Length = 287

 Score = 44.4 bits (103), Expect = 0.091,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 11/96 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS+  + +G   L  ++  I        A+TD +      + ++ A   G+  + G 
Sbjct: 7   LHIHSA--ISDGTQPLTELIPLIHEAGLTGFALTDHDTACGWSQAAELAGEYGLDFLPGA 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY 109
           +            ++          ++       GY
Sbjct: 65  EFSC----RYTYCDEQGRKRTKSVHLLAY-----GY 91


>gi|156938222|ref|YP_001436018.1| aspartyl-tRNA synthetase [Ignicoccus hospitalis KIN4/I]
 gi|156567206|gb|ABU82611.1| aspartyl-tRNA synthetase [Ignicoccus hospitalis KIN4/I]
          Length = 453

 Score = 44.4 bits (103), Expect = 0.091,   Method: Composition-based stats.
 Identities = 8/61 (13%), Positives = 22/61 (36%), Gaps = 12/61 (19%)

Query: 971  YKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            Y+ +L         E    + G  +R+A  V + +        ++ ++   + +   +  
Sbjct: 3    YRDLL-------VAEITPEMEGRRVRVAGWVHAVRSIG-----KLAFLILRDFSGTIQVT 50

Query: 1031 F 1031
            F
Sbjct: 51   F 51


>gi|73669152|ref|YP_305167.1| bifunctional DNA polymerase X family protein/ histidinol
           phosphatase [Methanosarcina barkeri str. Fusaro]
 gi|72396314|gb|AAZ70587.1| DNA polymerase X family / putative histidinol phosphatase
           [Methanosarcina barkeri str. Fusaro]
          Length = 584

 Score = 44.4 bits (103), Expect = 0.091,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+ YS  EG  SL  +++K        IA+TD 
Sbjct: 352 LHMHTEYS--EGKDSLKTMIEKAETLGYEYIAVTDH 385


>gi|120406629|ref|YP_956458.1| hypothetical protein Mvan_5687 [Mycobacterium vanbaalenii PYR-1]
 gi|119959447|gb|ABM16452.1| PHP C-terminal domain protein [Mycobacterium vanbaalenii PYR-1]
          Length = 335

 Score = 44.4 bits (103), Expect = 0.092,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS++S  +G+  +  ++    A      A+TD 
Sbjct: 100 LHVHSNWS--DGSAPIEEMMLAARAIGHEYCALTDH 133


>gi|326318413|ref|YP_004236085.1| PHP domain-containing protein [Acidovorax avenae subsp. avenae
          ATCC 19860]
 gi|323375249|gb|ADX47518.1| PHP domain protein [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 288

 Score = 44.4 bits (103), Expect = 0.093,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS  S  +G L+   +  +  A+     A+TD +
Sbjct: 10 LHCHSVVS--DGTLTPEALAQRARANGVELWALTDHD 44


>gi|167624540|ref|YP_001674834.1| phosphotransferase domain-containing protein [Shewanella
          halifaxensis HAW-EB4]
 gi|167354562|gb|ABZ77175.1| PHP domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 292

 Score = 44.4 bits (103), Expect = 0.093,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ--KACAAGIQPII 71
          L  H++ S  +G L+ + ++ +  +      AITD +      E  +  +A    +  I 
Sbjct: 16 LHSHTTAS--DGQLTPSELIARAISKGVQIFAITDHDTTDGLKEAHEFNQAHETPLALIN 73

Query: 72 GCQLD 76
          G ++ 
Sbjct: 74 GVEIS 78


>gi|260893333|ref|YP_003239430.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Ammonifex degensii KC4]
 gi|260865474|gb|ACX52580.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Ammonifex degensii KC4]
          Length = 194

 Score = 44.4 bits (103), Expect = 0.095,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  + G+G T AR I+E    + PF S+ED         +  R LE L
Sbjct: 142 ALQTLPGIGPTLARRIVEYRAKNGPFTSVEDLAK---VPGIGPRRLEQL 187


>gi|84490272|ref|YP_448504.1| metal-dependent phosphoesterase [Methanosphaera stadtmanae DSM
          3091]
 gi|84373591|gb|ABC57861.1| predicted metal-dependent phosphoesterase [Methanosphaera
          stadtmanae DSM 3091]
          Length = 218

 Score = 44.4 bits (103), Expect = 0.095,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           +HS YS  +    L NI+         AIAITD +
Sbjct: 6  HIHSKYS-KDSITPLENIIKYSKKIGLNAIAITDHD 40


>gi|15679404|ref|NP_276521.1| DNA polymerase II small subunit [Methanothermobacter
            thermautotrophicus str. Delta H]
 gi|13431445|sp|O27456|DP2S_METTH RecName: Full=DNA polymerase II small subunit; Short=Pol II
 gi|2622517|gb|AAB85882.1| DNA polymerase delta small subunit [Methanothermobacter
            thermautotrophicus str. Delta H]
          Length = 482

 Score = 44.4 bits (103), Expect = 0.095,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 17/60 (28%), Gaps = 8/60 (13%)

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +P L+  G     +         + +  MV   +   T+   R   +   +   E     
Sbjct: 120  RPELK--GHIPIADLRGGED--VVSIIGMVNDVRN--TKNNHR--IIELEDDTGEISVVV 171


>gi|271967572|ref|YP_003341768.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270510747|gb|ACZ89025.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 560

 Score = 44.4 bits (103), Expect = 0.095,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 25/99 (25%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS------QKACAA-- 65
           L  H+   L +G  SL +++    A      A+TD      A + +       KA     
Sbjct: 331 LHTHTD--LTDGIASLEDMVAAARARGHSYYAVTDH-----APDLAMQRMTLDKALEQRE 383

Query: 66  ----------GIQPIIGCQLDIDMQDNLKMTNQGKTPFP 94
                      ++ + G +L+I    ++    +    F 
Sbjct: 384 RLQRLQASHPDMRLLHGTELNIAPDGSVDWPAEVLAGFD 422


>gi|300692106|ref|YP_003753101.1| hypothetical protein RPSI07_2468 [Ralstonia solanacearum PSI07]
 gi|299079166|emb|CBJ51834.1| conserved exported protein of unknown function [Ralstonia
           solanacearum PSI07]
          Length = 105

 Score = 44.4 bits (103), Expect = 0.097,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  + GVG   ++ I+E    + P+    DF +RV    +  + L  L
Sbjct: 32  ALETLSGVGPKRSKAIVEERTKNGPYKDAADFMARVP--GIGEKSLAKL 78


>gi|89902005|ref|YP_524476.1| PHP-like protein [Rhodoferax ferrireducens T118]
 gi|89346742|gb|ABD70945.1| PHP-like [Rhodoferax ferrireducens T118]
          Length = 319

 Score = 44.4 bits (103), Expect = 0.098,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 4/38 (10%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAI-AITDTN 50
          L  HS  ++ +G L+   +  +   +   A+ A+TD +
Sbjct: 29 LHSHS--TVSDGTLTPEELAARAKTNGV-ALWALTDHD 63


>gi|86742505|ref|YP_482905.1| PHP-like protein [Frankia sp. CcI3]
 gi|86569367|gb|ABD13176.1| PHP-like [Frankia sp. CcI3]
          Length = 289

 Score = 44.4 bits (103), Expect = 0.099,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L  HS+ S  +G  S  N++   A      +A+TD + 
Sbjct: 8  LHTHSTAS--DGLESPENLVRLAAGQGLSILALTDHDT 43


>gi|307297301|ref|ZP_07577107.1| histidinol phosphate phosphatase HisJ family [Thermotogales
          bacterium mesG1.Ag.4.2]
 gi|306916561|gb|EFN46943.1| histidinol phosphate phosphatase HisJ family [Thermotogales
          bacterium mesG1.Ag.4.2]
          Length = 250

 Score = 44.4 bits (103), Expect = 0.099,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HSS+S  +    +  I+++        I I+D +
Sbjct: 5  LHNHSSFSP-DSQTPVEEIVEEAILKGLKVIGISDHD 40


>gi|218553818|ref|YP_002386731.1| hypothetical protein ECIAI1_1285 [Escherichia coli IAI1]
 gi|218360586|emb|CAQ98144.1| conserved hypothetical protein [Escherichia coli IAI1]
          Length = 293

 Score = 44.4 bits (103), Expect = 0.099,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G L+   ++ +    +   +AITD +   +     ++   +G  +  I 
Sbjct: 12 LHSHTTAS--DGCLTPEALVHRAVEMRVGTLAITDHDTTVAIAPAREEISRSGLALNLIP 69

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 70 GVEISTVWENH 80


>gi|14520594|ref|NP_126069.1| hypothetical protein PAB0252 [Pyrococcus abyssi GE5]
 gi|5457810|emb|CAB49300.1| Predicted RNA-binding protein [Pyrococcus abyssi GE5]
          Length = 209

 Score = 44.4 bits (103), Expect = 0.099,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV-----DSKKLNRRVLESL 885
           SL  + G+G      I+E    KPF+S ED   RV       K + +R+L+ L
Sbjct: 135 SLELLPGIGKKHMWDILEEREKKPFESFEDLKKRVKGLPDPVKMIAKRILDEL 187


>gi|237808539|ref|YP_002892979.1| PHP domain-containing protein [Tolumonas auensis DSM 9187]
 gi|237500800|gb|ACQ93393.1| PHP domain protein [Tolumonas auensis DSM 9187]
          Length = 296

 Score = 44.4 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          L +HS++S L+  L +  ++D+  A+Q   +A+TD N++ S 
Sbjct: 6  LHMHSAFS-LDADLPVEILIDRCLANQVSTLAVTDHNSVHSV 46


>gi|209522309|ref|ZP_03270934.1| PHP domain protein [Burkholderia sp. H160]
 gi|209497254|gb|EDZ97484.1| PHP domain protein [Burkholderia sp. H160]
          Length = 276

 Score = 44.4 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G  +  ++  +  A+     A+TD + +    E    A A G+  + G 
Sbjct: 5   LHCHS--TVSDGQFAPGDVARRAHANGVTLWALTDHDEVAGQHEARATAEALGMDYLGGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVL--LVSTAEG 108
           ++ +         +           I++  L  T +G
Sbjct: 63  EISVTWAGRT--VHIVGLGIDPTSQILIDGLARTRDG 97


>gi|254427544|ref|ZP_05041251.1| PKD domain protein [Alcanivorax sp. DG881]
 gi|196193713|gb|EDX88672.1| PKD domain protein [Alcanivorax sp. DG881]
          Length = 908

 Score = 44.4 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 5/42 (11%)

Query: 14  LQVHSSYSLLEGA--LSLNNILDKIAADQQPAIAITDT-NNL 52
           L  H+ YS  +GA      ++ +++ A       +TD  +N+
Sbjct: 534 LHAHTGYS--DGALNSRPADVFERVKAQGLDFTGVTDHSDNV 573


>gi|300716951|ref|YP_003741754.1| metal-dependent phosphoesterases [Erwinia billingiae Eb661]
 gi|299062787|emb|CAX59907.1| metal-dependent phosphoesterases [Erwinia billingiae Eb661]
          Length = 303

 Score = 44.4 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 10/71 (14%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H+  S  +G L+   ++ +    +   +AITD + +       +        ++ + 
Sbjct: 27 LHSHTRAS--DGLLTPEELVLRAVEHRVGVLAITDHDTIDGVQPAREAIAKHQLPLKLMA 84

Query: 72 GCQLDIDMQDN 82
          G ++    +++
Sbjct: 85 GVEVSTLWENH 95


>gi|319762259|ref|YP_004126196.1| hypothetical protein Alide_1549 [Alicycliphilus denitrificans BC]
 gi|330825814|ref|YP_004389117.1| hypothetical protein Alide2_3260 [Alicycliphilus denitrificans
           K601]
 gi|317116820|gb|ADU99308.1| hypothetical protein Alide_1549 [Alicycliphilus denitrificans BC]
 gi|329311186|gb|AEB85601.1| hypothetical protein Alide2_3260 [Alicycliphilus denitrificans
           K601]
          Length = 106

 Score = 44.4 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           L  IKG+G   +  I+   A   F    D  SRV  K +       L   G
Sbjct: 34  LDGIKGIGPALSSRILAERAKGRFQDWRDLISRV--KGIGPAAAARLSENG 82


>gi|290794221|gb|ADD64432.1| DNA polymerase III [Streptococcus salivarius]
          Length = 165

 Score = 44.4 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 17/175 (9%)

Query: 204 AYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSI 263
           A   + P+V  +   +    D     +L A++ +  +S+     +     L +  EM S 
Sbjct: 8   AKEFDYPVVPLHTVCYFENADRSTIQMLHAISQNVSLSEASICPMN--QLLFSPQEMESA 65

Query: 264 FSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRL 323
           +SD+PEAL N  ++    ++       +          +      ++LR  A +GLE   
Sbjct: 66  YSDIPEALNNLEQLVSDITYQFDTDLKLPR-------FNRDMPAVDQLRQLAQSGLE--- 115

Query: 324 AQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGR 378
                +K   +  Y++RLD EL++I +M F  YFLIV D +++ +     +G GR
Sbjct: 116 -----SKKLTSAVYQERLDKELSIIHQMGFDDYFLIVWDLLRFGRSRGYYMGMGR 165


>gi|222478452|ref|YP_002564689.1| PHP domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222451354|gb|ACM55619.1| PHP domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 269

 Score = 44.4 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  H+  ++ +G ++ + ++D         +AITD +
Sbjct: 10 LHAHT--TVSDGTMTADELVDVARETGLDWVAITDHD 44


>gi|159035899|ref|YP_001535152.1| hypothetical protein Sare_0226 [Salinispora arenicola CNS-205]
 gi|157914734|gb|ABV96161.1| PHP domain protein [Salinispora arenicola CNS-205]
          Length = 356

 Score = 44.4 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             HS +S  +G  S+  +           + ITD 
Sbjct: 107 HTHSDWS--DGGSSIEEMALAAVELGHEYLVITDH 139


>gi|120612351|ref|YP_972029.1| phosphotransferase domain-containing protein [Acidovorax citrulli
          AAC00-1]
 gi|120590815|gb|ABM34255.1| PHP C-terminal domain protein [Acidovorax citrulli AAC00-1]
          Length = 287

 Score = 44.4 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS  S  +G L+   +  +  A+     A+TD +
Sbjct: 9  LHCHSVVS--DGTLTPEALAQRARANGVELWALTDHD 43


>gi|319647267|ref|ZP_08001489.1| YshC protein [Bacillus sp. BT1B_CT2]
 gi|317390614|gb|EFV71419.1| YshC protein [Bacillus sp. BT1B_CT2]
          Length = 413

 Score = 44.4 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +   A     +AITD 
Sbjct: 180 LHMHSAWS--DGAFSIREMAEACMAKGYRYMAITDH 213


>gi|260584663|ref|ZP_05852409.1| competence protein ComEA [Granulicatella elegans ATCC 700633]
 gi|260157686|gb|EEW92756.1| competence protein ComEA [Granulicatella elegans ATCC 700633]
          Length = 201

 Score = 44.4 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLES 884
           L  IKG+G   A  I++   +   F + ED       K + ++ LE+
Sbjct: 150 LQTIKGIGKKKAEAILQYRKEHGAFRTKEDLLQ---VKGIGKKALEA 193


>gi|322389144|ref|ZP_08062706.1| competence protein CelA [Streptococcus parasanguinis ATCC 903]
 gi|321144154|gb|EFX39570.1| competence protein CelA [Streptococcus parasanguinis ATCC 903]
          Length = 222

 Score = 44.4 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
           L  + G+G   A+ I+    A+ PF S++D     +   +  + LE L  A
Sbjct: 171 LQTVSGIGQKRAQDIIAYREANGPFRSVDDLK---NVSGIGEKTLEKLRDA 218


>gi|312867154|ref|ZP_07727364.1| comEA protein [Streptococcus parasanguinis F0405]
 gi|311097283|gb|EFQ55517.1| comEA protein [Streptococcus parasanguinis F0405]
          Length = 222

 Score = 44.4 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
           L  + G+G   A+ I+    A+ PF S++D     +   +  + LE L  A
Sbjct: 171 LQTVSGIGQKRAQDIIAYREANGPFRSVDDLK---NVSGIGEKTLEKLRDA 218


>gi|296876842|ref|ZP_06900890.1| competence protein CelA [Streptococcus parasanguinis ATCC 15912]
 gi|296432344|gb|EFH18143.1| competence protein CelA [Streptococcus parasanguinis ATCC 15912]
          Length = 222

 Score = 44.4 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
           L  + G+G   A+ I+    A+ PF S++D     +   +  + LE L  A
Sbjct: 171 LQTVSGIGQKRAQDIIAYREANGPFRSVDDLK---NVSGIGEKTLEKLRDA 218


>gi|22299882|ref|NP_683129.1| hypothetical protein tll2339 [Thermosynechococcus elongatus BP-1]
 gi|22296067|dbj|BAC09891.1| tll2339 [Thermosynechococcus elongatus BP-1]
          Length = 565

 Score = 44.4 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  + GVG+  A  I+ A   KPF SL D  +      +  ++LE L
Sbjct: 516 LETLPGVGSKLAAEIIRAREHKPFQSLADLDA---VPGVGPKLLERL 559


>gi|295112162|emb|CBL28912.1| competence protein ComEA helix-hairpin-helix repeat region
           [Synergistetes bacterium SGP1]
          Length = 230

 Score = 44.4 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
           L A++G+G T AR I+E   +  PF S+ED   
Sbjct: 178 LEALRGIGPTLARRIVEYRQEHGPFTSVEDLVR 210


>gi|160936596|ref|ZP_02083963.1| hypothetical protein CLOBOL_01486 [Clostridium bolteae ATCC
          BAA-613]
 gi|158440387|gb|EDP18132.1| hypothetical protein CLOBOL_01486 [Clostridium bolteae ATCC
          BAA-613]
          Length = 208

 Score = 44.4 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 8/66 (12%)

Query: 13 HLQ-VHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE-FSQKACAAGIQPI 70
          HL      YS  +  +SL  I+         A+ ITD +++    E  ++ +   G  PI
Sbjct: 6  HLHECT--YS-SDSKISLEEIVTTARGRGLDAVCITDHDSM-GLREYAAEYSDRTGF-PI 60

Query: 71 I-GCQL 75
            G + 
Sbjct: 61 FVGIEF 66


>gi|296130317|ref|YP_003637567.1| PHP domain protein [Cellulomonas flavigena DSM 20109]
 gi|296022132|gb|ADG75368.1| PHP domain protein [Cellulomonas flavigena DSM 20109]
          Length = 280

 Score = 44.4 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 36/110 (32%), Gaps = 20/110 (18%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S  +G  +   ++          +A+TD +      E +  A   GI  + G 
Sbjct: 5   LHTHSRAS--DGTQAPAVLVAAARDAGLDVVALTDHDTTAGWDEAAAAALDVGIALVRGT 62

Query: 74  QL-------------DIDMQDNL----KMTNQGKTPFPTVPSIV-LLVST 105
           ++              +   ++     ++    ++      SIV LL   
Sbjct: 63  EVSARSRGVSVHLLSYLQDPEHPALAGELARAAESRVTRARSIVELLARD 112


>gi|168705124|ref|ZP_02737401.1| PHP-like protein [Gemmata obscuriglobus UQM 2246]
          Length = 307

 Score = 44.4 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 57/176 (32%), Gaps = 38/176 (21%)

Query: 2   TQYLEKSPSF-------VHL--------QVHS-----SYSLLEGALSLNNILDKIAADQQ 41
           +  + ++ ++        HL          H+      Y+        + ++      + 
Sbjct: 11  SSTMPRASAYTTAASRLAHLAAPARADLHTHTVASDGDYT-------PSQVVALARQARL 63

Query: 42  PAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI-V 100
            A+AITD + L    E    A  A I+ + G ++        ++   G    P  P +  
Sbjct: 64  AAVAITDHDTLAGVPEAQHAAAGA-IEVVPGVEISTSFAGR-ELHLLGYFVRPDHPELGA 121

Query: 101 LLVSTAEG----YQRLIELVSRMYLLDQGKQSVRIC---LSWLQEIGTEGLIMLTG 149
            L    EG    ++ L+ LV +           R+       L       L+++ G
Sbjct: 122 ALARVREGRRERFRALVALV-QARGASIPDDRARLTETAADSLGRRHVADLVIVAG 176


>gi|116619976|ref|YP_822132.1| phosphotransferase domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116223138|gb|ABJ81847.1| PHP C-terminal domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 581

 Score = 44.4 bits (103), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 18/96 (18%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NL-FS-----ALEFSQKACA 64
           L +H++ +  +G  +L  + +         IAITD +   ++         +EF+++   
Sbjct: 349 LHMHTTET--DGRATLEEMAEAAREKGYEYIAITDHSKALSMTNGLDEKRVVEFARRVRE 406

Query: 65  -----AGIQPII-GCQLDIDMQDNLKMTNQGKTPFP 94
                 GI+ I  G + DI     + + N       
Sbjct: 407 INRAGLGIR-IFSGIECDILKDGAMDLENDALAELD 441


>gi|303228545|ref|ZP_07315373.1| PHP domain protein [Veillonella atypica ACS-134-V-Col7a]
 gi|302516792|gb|EFL58706.1| PHP domain protein [Veillonella atypica ACS-134-V-Col7a]
          Length = 274

 Score = 44.4 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 8/64 (12%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPIIG 72
           +HS++S  +G  +   +L          IA+TD + +                IQ I G
Sbjct: 6  HMHSTFS--DGVETPEQLLQHAIEADLKMIALTDHDEIAGI----DVMLQNNSSIQIITG 59

Query: 73 CQLD 76
          C+  
Sbjct: 60 CEFS 63


>gi|303232096|ref|ZP_07318799.1| PHP domain protein [Veillonella atypica ACS-049-V-Sch6]
 gi|302513202|gb|EFL55241.1| PHP domain protein [Veillonella atypica ACS-049-V-Sch6]
          Length = 274

 Score = 44.4 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 8/64 (12%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPIIG 72
           +HS++S  +G  +   +L          IA+TD + +                IQ I G
Sbjct: 6  HMHSTFS--DGVETPEQLLQHAIEADLKMIALTDHDEIAGI----DVMLQNNSSIQIITG 59

Query: 73 CQLD 76
          C+  
Sbjct: 60 CEFS 63


>gi|121594814|ref|YP_986710.1| hypothetical protein Ajs_2473 [Acidovorax sp. JS42]
 gi|120606894|gb|ABM42634.1| conserved hypothetical protein [Acidovorax sp. JS42]
          Length = 114

 Score = 44.4 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  ++G+G   +  I+   A  PF    D  +RV  K +       L
Sbjct: 34  LDGVRGIGPAMSSRILAERARGPFQDWSDLIARV--KGIGPAAAARL 78


>gi|109066841|ref|XP_001103689.1| PREDICTED: endonuclease/exonuclease/phosphatase family
           domain-containing protein 1-like isoform 1 [Macaca
           mulatta]
          Length = 569

 Score = 44.4 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 53/169 (31%), Gaps = 23/169 (13%)

Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            +  G+++ +A +I E       +   +  A    V + +   +K    V     S T  
Sbjct: 51  MTLPGVTRAVARSIVEYREYIGGFKKVEDLALVSGVGATKLEQVKFEICVS-SKGSSTQH 109

Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
             +  +     +         +P +                  L +++G+    A  I++
Sbjct: 110 SPSSLRRDLLAEQQPHHLATAVPLTPRVNINTATPAQ------LMSVRGLSEKMALSIVD 163

Query: 856 -ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSRMQLLQ 903
                 PF S+ED   R+D            + A  LD     R Q+  
Sbjct: 164 FRREHGPFRSVEDLV-RMDG-----------INAAFLDRI---RHQVFA 197


>gi|325519566|gb|EGC98929.1| hypothetical protein B1M_39131 [Burkholderia sp. TJI49]
          Length = 203

 Score = 44.4 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV 872
           +L ++KG+G   ++ I++    + PF   +D  +RV
Sbjct: 33  ALESVKGLGPVKSKAIIDERTKNGPFKDADDLANRV 68


>gi|262402466|ref|ZP_06079027.1| PHP family hydrolase [Vibrio sp. RC586]
 gi|262351248|gb|EEZ00381.1| PHP family hydrolase [Vibrio sp. RC586]
          Length = 290

 Score = 44.4 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++++  +     +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQELIERAVSFNIDVLAITDHDTVAALNDARAYIAQQQYPLQLVN 62

Query: 72 GCQLD 76
          G ++ 
Sbjct: 63 GIEIS 67


>gi|322421857|ref|YP_004201080.1| PHP domain-containing protein [Geobacter sp. M18]
 gi|320128244|gb|ADW15804.1| PHP domain protein [Geobacter sp. M18]
          Length = 286

 Score = 44.4 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 23/90 (25%)

Query: 15  QVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTN-NL--------FSALEFSQ 60
             H+     +YS      ++N + +  A      +AITD    L        F A+ F  
Sbjct: 56  HTHTLASGHAYS------TINELANAAAQAGLRGLAITDHGPGLPGGPHRYHFCAMRFVP 109

Query: 61  KACAAGIQPII-GCQLDIDMQDNLKMTNQG 89
              + G++ I  G + +I          Q 
Sbjct: 110 ATIS-GVR-IFRGIEANILDHTGRLDLEQD 137


>gi|297565571|ref|YP_003684543.1| PHP domain-containing protein [Meiothermus silvanus DSM 9946]
 gi|296850020|gb|ADH63035.1| PHP domain protein [Meiothermus silvanus DSM 9946]
          Length = 532

 Score = 44.4 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             H++YS  +G  SL  + +         + I+D 
Sbjct: 304 HNHTTYS--DGTASLREMAEAAIERGYEYMVISDH 336


>gi|206560281|ref|YP_002231045.1| hypothetical protein BCAL1917 [Burkholderia cenocepacia J2315]
 gi|198036322|emb|CAR52218.1| putative exported protein [Burkholderia cenocepacia J2315]
          Length = 216

 Score = 44.4 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV 872
           +L ++KG+G   ++ I++    + PF   +D  +RV
Sbjct: 47  ALESVKGLGPVKSKAIIDERTKNGPFKDADDLANRV 82


>gi|170704037|ref|ZP_02894679.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
 gi|170131053|gb|EDS99738.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
          Length = 203

 Score = 44.4 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV 872
           +L ++KG+G   ++ I++    + PF   +D  +RV
Sbjct: 33  ALESVKGLGPVKSKAIIDERTKNGPFKDADDLANRV 68


>gi|254248041|ref|ZP_04941362.1| DNA uptake protein [Burkholderia cenocepacia PC184]
 gi|124872817|gb|EAY64533.1| DNA uptake protein [Burkholderia cenocepacia PC184]
          Length = 167

 Score = 44.4 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV 872
           +L ++KG+G   ++ I++    + PF   +D  +RV
Sbjct: 61  ALESVKGLGPVKSKAIIDERTKNGPFKDADDLANRV 96


>gi|170733205|ref|YP_001765152.1| hypothetical protein Bcenmc03_1869 [Burkholderia cenocepacia MC0-3]
 gi|169816447|gb|ACA91030.1| conserved hypothetical protein [Burkholderia cenocepacia MC0-3]
          Length = 203

 Score = 44.4 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV 872
           +L ++KG+G   ++ I++    + PF   +D  +RV
Sbjct: 33  ALESVKGLGPVKSKAIIDERTKNGPFKDADDLANRV 68


>gi|107028976|ref|YP_626071.1| hypothetical protein Bcen_6234 [Burkholderia cenocepacia AU 1054]
 gi|116689866|ref|YP_835489.1| hypothetical protein Bcen2424_1845 [Burkholderia cenocepacia
           HI2424]
 gi|105898140|gb|ABF81098.1| conserved hypothetical protein [Burkholderia cenocepacia AU 1054]
 gi|116647955|gb|ABK08596.1| conserved hypothetical protein [Burkholderia cenocepacia HI2424]
          Length = 203

 Score = 44.4 bits (103), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV 872
           +L ++KG+G   ++ I++    + PF   +D  +RV
Sbjct: 33  ALESVKGLGPVKSKAIIDERTKNGPFKDADDLANRV 68


>gi|152965131|ref|YP_001360915.1| PHP domain protein [Kineococcus radiotolerans SRS30216]
 gi|151359648|gb|ABS02651.1| PHP domain protein [Kineococcus radiotolerans SRS30216]
          Length = 285

 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 38/131 (29%), Gaps = 9/131 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G      ++   A      IA+TD +      E        G++ + G 
Sbjct: 5   LHTHSNAS--DGTQPPAGVVTSAAEAGLDVIALTDHDTSDGWDEAVATGERLGVRVVPGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQ-SVRIC 132
           ++              +      P   +L  +           SR  L+ +       + 
Sbjct: 63  EISCLRGGVSVHLLSYRHDPADEPLARMLAGSRT-----SRA-SRARLMVERLGPDTGLR 116

Query: 133 LSWLQEIGTEG 143
              + E    G
Sbjct: 117 WEDVLEHVHGG 127


>gi|145631351|ref|ZP_01787122.1| hypothetical protein CGSHi22421_03053 [Haemophilus influenzae
           R3021]
 gi|144983010|gb|EDJ90514.1| hypothetical protein CGSHi22421_03053 [Haemophilus influenzae
           R3021]
          Length = 240

 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 44  IAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           +A+ D + +    E    A   GI+ I G ++     +   +   G     T P +  L+
Sbjct: 1   MALCDHDTIAGIDEAEIAAKEVGIELITGVEIS-TNWEGRGIHIVGLNFDKTHPKMTALL 59

Query: 104 STAEGYQ 110
            + +  +
Sbjct: 60  QSQKALR 66


>gi|157370906|ref|YP_001478895.1| phosphotransferase domain-containing protein [Serratia
          proteamaculans 568]
 gi|157322670|gb|ABV41767.1| PHP domain protein [Serratia proteamaculans 568]
          Length = 295

 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 1  LTQYLEKSPSFV--HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          +T    +  +F    L  H++ S  +G L+   ++ +    +   +AITD +     
Sbjct: 1  MTDSSPQPSAFTLYDLHSHTTAS--DGYLTPAQLVQRAVEMRVGVLAITDHDTTSGL 55


>gi|28572355|ref|NP_789135.1| ATP-dependent DNA helicase RecG [Tropheryma whipplei TW08/27]
 gi|28410486|emb|CAD66872.1| ATP-dependent DNA helicase RecG [Tropheryma whipplei TW08/27]
          Length = 673

 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            R +      +    I G+ + +   V+S +Q+KT  G+    VT S+     +  FF
Sbjct: 24   RYICRGKLTKLSELIPGDEVTIVGRVLSTEQRKTFSGANFLSVTLSDGENIIQLVFF 80


>gi|28493533|ref|NP_787694.1| ATP-dependent DNA helicase [Tropheryma whipplei str. Twist]
 gi|28476575|gb|AAO44663.1| ATP-dependent DNA helicase [Tropheryma whipplei str. Twist]
          Length = 768

 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            R +      +    I G+ + +   V+S +Q+KT  G+    VT S+     +  FF
Sbjct: 119  RYICRGKLTKLSELIPGDEVTIVGRVLSTEQRKTFSGANFLSVTLSDGENIIQLVFF 175


>gi|113954059|ref|YP_731994.1| NAD-dependent DNA ligase LigA [Synechococcus sp. CC9311]
 gi|122945488|sp|Q0I6C8|DNLJ_SYNS3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
           synthase [NAD+]
 gi|113881410|gb|ABI46368.1| DNA ligase, NAD-dependent [Synechococcus sp. CC9311]
          Length = 697

 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 62/193 (32%), Gaps = 37/193 (19%)

Query: 795 EMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIM 854
                  + +   ++    I    P++    +   V    +      I G+G+     ++
Sbjct: 426 CPACGSTLVRESNESATRCINSSCPAILRGALRHWVSKGAM-----DIDGLGSKLIEQLV 480

Query: 855 EASADKPFDSLEDFCSRVD------SKKLNRRVLESLVFAGALDCFGYSRMQLLQ----- 903
           +        S+ D   R+D       +++  +  E+L+ A        SR Q        
Sbjct: 481 DR---GLVQSIADLY-RLDMALLGSLERMGSKSAENLIQA-----LNASRSQGWAKQLYG 531

Query: 904 ------------SLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVR 951
                       ++      A  + +   +  E+I A          +L+++    ++ R
Sbjct: 532 LGIHHVGDVNAKAITTAFPNADSLNQAACHAPESITAIFGVGKEIAQSLQQWFSSPANQR 591

Query: 952 FENEQRVLGFYFS 964
             +E R LGF  S
Sbjct: 592 LLDELRSLGFSLS 604


>gi|91787665|ref|YP_548617.1| hypothetical protein Bpro_1783 [Polaromonas sp. JS666]
 gi|91696890|gb|ABE43719.1| conserved hypothetical protein [Polaromonas sp. JS666]
          Length = 181

 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
           L  IKG+G  T + I+       F + +DF +RV
Sbjct: 31  LDGIKGIGPVTTKLIISERKKGEFKNWDDFIARV 64


>gi|300741896|ref|ZP_07071917.1| PHP domain protein [Rothia dentocariosa M567]
 gi|300381081|gb|EFJ77643.1| PHP domain protein [Rothia dentocariosa M567]
          Length = 287

 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 70/220 (31%), Gaps = 46/220 (20%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS+  + +G   L  ++  I        A+TD +      + ++ A   G+  + G 
Sbjct: 7   LHIHSA--ISDGTQPLTELIPLIRKAGLTGFALTDHDTACGWSQAAELAGEYGLDFLPGA 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVL---------LVS-------TAEGY-QRLIELV 116
           +         +   +          ++          L         +  G  +R++EL+
Sbjct: 65  EFSCRYTYRDEHGRKRTKSV----HLLAYGYDPQSSELARRVEEIRCSRAGRARRIVELL 120

Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
           S             +    +QE         TG  +  + R    ++   A       ++
Sbjct: 121 SA---------DYPLTWEHVQEQ--------TGEENASVGRPHIADALIAAGIVASR-EE 162

Query: 177 LFGDRLYVN---LQRHRGYDRYRESQVVQLAYTHELPLVA 213
            FG  LY            D    +++V  A    +P+VA
Sbjct: 163 AFGRILYAGSPYYVPQESMDPLEATRLVLAAG--GVPVVA 200


>gi|33861437|ref|NP_892998.1| hypothetical protein PMM0880 [Prochlorococcus marinus subsp.
          pastoris str. CCMP1986]
 gi|33634014|emb|CAE19339.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
          pastoris str. CCMP1986]
          Length = 215

 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 15/74 (20%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI---- 67
          V+   H+ +S  +G+     +LD+   ++   I+ITD +     ++         I    
Sbjct: 22 VNFHCHTKFS--DGSFDPEQLLDQAFINKIKFISITDHHT----VKAHDFIEQNNILEKY 75

Query: 68 -----QPIIGCQLD 76
               + I G +++
Sbjct: 76 PTDSFKLISGIEIN 89


>gi|23099580|ref|NP_693046.1| hypothetical protein OB2125 [Oceanobacillus iheyensis HTE831]
 gi|22777810|dbj|BAC14081.1| DNA-dependent DNA polymerase beta chain [Oceanobacillus iheyensis
           HTE831]
          Length = 572

 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA SL  +++K+       + ITD 
Sbjct: 340 LHMHTTWS--DGAQSLEEMVNKVREKGYQFMGITDH 373


>gi|269837382|ref|YP_003319610.1| PHP domain-containing protein [Sphaerobacter thermophilus DSM
          20745]
 gi|269786645|gb|ACZ38788.1| PHP domain protein [Sphaerobacter thermophilus DSM 20745]
          Length = 307

 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
          HL         +G  + + ++D +        A+ D + + S  E  + A   GI  I G
Sbjct: 17 HLHTR----ASDGGWTPHQLVDHLVEHGFKVAAVCDHDTMRSVPEAMEHAANRGILIIPG 72

Query: 73 CQLDIDMQDNLK 84
           ++    +D   
Sbjct: 73 VEVTTWWEDRQW 84


>gi|55377529|ref|YP_135379.1| DNA polymerase IV [Haloarcula marismortui ATCC 43049]
 gi|55230254|gb|AAV45673.1| DNA polymerase IV [Haloarcula marismortui ATCC 43049]
          Length = 578

 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             H+++S  +G+ S+  +++  AA     +A+TD 
Sbjct: 351 HTHTNWS--DGSNSITEMVEGAAAFGHDYLAVTDH 383


>gi|321312392|ref|YP_004204679.1| hypothetical protein BSn5_05120 [Bacillus subtilis BSn5]
 gi|320018666|gb|ADV93652.1| hypothetical protein BSn5_05120 [Bacillus subtilis BSn5]
          Length = 570

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +         +AITD 
Sbjct: 338 LHMHSTWS--DGAFSIREMAEACIKKGYQYMAITDH 371


>gi|237736943|ref|ZP_04567424.1| histidinol phosphate phosphatase [Fusobacterium mortiferum ATCC
          9817]
 gi|229420805|gb|EEO35852.1| histidinol phosphate phosphatase [Fusobacterium mortiferum ATCC
          9817]
          Length = 271

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           VHS +S  +    L  I++K    +   I ITD 
Sbjct: 7  HVHSEFS-GDSKEKLEKIIEKAKELKMDEITITDH 40


>gi|306825436|ref|ZP_07458776.1| competence protein CelA [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432374|gb|EFM35350.1| competence protein CelA [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 216

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  IKG+G   A+ I++    +  F S+++         +  + +E L
Sbjct: 165 LKQIKGLGGKRAQDIIDHRETNGKFKSVDELKK---VSGIGAKTIEKL 209


>gi|312141974|ref|YP_004009310.1| DNA polymerase [Rhodococcus equi 103S]
 gi|311891313|emb|CBH50634.1| putative DNA polymerase [Rhodococcus equi 103S]
          Length = 341

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS +S  +G   ++ ++   A       A+TD 
Sbjct: 104 LHVHSDWS--DGGSPIDEMMRAAATIGHEYCALTDH 137


>gi|163815110|ref|ZP_02206491.1| hypothetical protein COPEUT_01266 [Coprococcus eutactus ATCC
          27759]
 gi|158449519|gb|EDP26514.1| hypothetical protein COPEUT_01266 [Coprococcus eutactus ATCC
          27759]
          Length = 282

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +HS +S  + +  L++I+ K      P I +TD 
Sbjct: 16 HIHSEFS-SDSSAPLDSIIQKAIQLGIPKICLTDH 49


>gi|126336795|ref|XP_001374259.1| PREDICTED: similar to KIAA1706 protein [Monodelphis domestica]
          Length = 340

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 16/68 (23%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           L  ++GV    A  I+E   +  PF S+ED         ++   L+ L            
Sbjct: 135 LRGLRGVSERLALAIVEHRQERGPFRSVEDLLR---LDGVSPASLDKL------------ 179

Query: 898 RMQLLQSL 905
           R QL  + 
Sbjct: 180 RPQLFAAA 187


>gi|292488389|ref|YP_003531271.1| protein trpH [Erwinia amylovora CFBP1430]
 gi|292899586|ref|YP_003538955.1| phosphoesterase [Erwinia amylovora ATCC 49946]
 gi|291199434|emb|CBJ46551.1| putative phosphoesterase [Erwinia amylovora ATCC 49946]
 gi|291553818|emb|CBA20863.1| Protein trpH [Erwinia amylovora CFBP1430]
 gi|312172532|emb|CBX80788.1| Protein trpH [Erwinia amylovora ATCC BAA-2158]
          Length = 303

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 58/174 (33%), Gaps = 21/174 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H+  S  +G L+   ++ +    +   +AITD +         +        ++ + 
Sbjct: 16  LHSHTRAS--DGLLTPEQLVLRAVQQRVGVLAITDHDTTDGIAPAREAMMRHQLPLRLVD 73

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G ++    +++                + LL   A+  +RL        L+    +   I
Sbjct: 74  GVEISTLWENHEIHIVGLGIDIAHPQMVALLA--AQAERRLAR----ARLIAGRLEKAHI 127

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVN 185
                     +G + L     G + R  F     +A  +    +++F +  Y+ 
Sbjct: 128 P------GALDGALAL--AEGGAVTRGHFA-RFLIAAGKADNMQQVFKN--YLA 170


>gi|257464269|ref|ZP_05628648.1| HisJ family histidinol phosphate phosphatase [Fusobacterium sp.
          D12]
 gi|317061784|ref|ZP_07926269.1| histidinol phosphate phosphatase HisJ family [Fusobacterium sp.
          D12]
 gi|313687460|gb|EFS24295.1| histidinol phosphate phosphatase HisJ family [Fusobacterium sp.
          D12]
          Length = 267

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +HS +S  + + +L  +++         IAITD 
Sbjct: 7  HIHSEFS-GDSSQNLGELIEHCIQLGLKEIAITDH 40


>gi|21226610|ref|NP_632532.1| isoleucyl-tRNA synthetase [Methanosarcina mazei Go1]
 gi|20904888|gb|AAM30204.1| Isoleucyl-tRNA synthetase [Methanosarcina mazei Go1]
          Length = 230

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 16/89 (17%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L VHS +S  +   S  +I++          AI D + +   L          ++   G 
Sbjct: 11  LHVHSEHS-KDSNSSHRDIIEVARRRGLDGFAICDHDTVEGGL----ACAEKALEL--GL 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           ++ +     +  +            I++L
Sbjct: 64  EITVLPGVEVSSSKG---------HILVL 83


>gi|16079911|ref|NP_390737.1| hypothetical protein BSU28590 [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221310800|ref|ZP_03592647.1| hypothetical protein Bsubs1_15606 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315125|ref|ZP_03596930.1| hypothetical protein BsubsN3_15512 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320043|ref|ZP_03601337.1| hypothetical protein BsubsJ_15418 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324325|ref|ZP_03605619.1| hypothetical protein BsubsS_15577 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81637732|sp|P94544|POLX_BACSU RecName: Full=DNA polymerase/3'-5' exonuclease PolX; Includes:
           RecName: Full=DNA polymerase type-X; Includes: RecName:
           Full=3'-5' exodeoxyribonuclease; Short=3'-5' exonuclease
 gi|1770035|emb|CAA99568.1| hypothetical protein [Bacillus subtilis]
 gi|2635324|emb|CAB14819.1| DNA polymerase X [Bacillus subtilis subsp. subtilis str. 168]
          Length = 570

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +         +AITD 
Sbjct: 338 LHMHSTWS--DGAFSIREMAEACIKKGYQYMAITDH 371


>gi|291485291|dbj|BAI86366.1| hypothetical protein BSNT_04172 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 570

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +GA S+  + +         +AITD 
Sbjct: 338 LHMHSTWS--DGAFSIREMAEACIKKGYQYMAITDH 371


>gi|172039327|ref|YP_001805828.1| hypothetical protein cce_4414 [Cyanothece sp. ATCC 51142]
 gi|171700781|gb|ACB53762.1| conserved hypothetical protein [Cyanothece sp. ATCC 51142]
          Length = 545

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
           L  + G+G + A  I+E    +PF SLED   
Sbjct: 496 LETLPGIGRSLAERIIEVRKIRPFTSLEDLTR 527


>gi|148998610|ref|ZP_01826050.1| competence protein CelA [Streptococcus pneumoniae SP11-BS70]
 gi|168575617|ref|ZP_02721553.1| competence protein [Streptococcus pneumoniae MLV-016]
 gi|307067612|ref|YP_003876578.1| DNA uptake protein-like DNA-binding protein [Streptococcus
           pneumoniae AP200]
 gi|147755608|gb|EDK62655.1| competence protein CelA [Streptococcus pneumoniae SP11-BS70]
 gi|183578591|gb|EDT99119.1| competence protein [Streptococcus pneumoniae MLV-016]
 gi|306409149|gb|ADM84576.1| DNA uptake protein-like DNA-binding protein [Streptococcus
           pneumoniae AP200]
          Length = 216

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   A+  F S+++         +  + +E L
Sbjct: 165 LKQVKGLGGKRAQDIIDHREANGKFKSIDELKK---VSGIGAKTIEKL 209


>gi|14591573|ref|NP_143655.1| hypothetical protein PH1822 [Pyrococcus horikoshii OT3]
 gi|3258258|dbj|BAA30941.1| 205aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 205

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV-----DSKKLNRRVLESL 885
           SL  + G+G      I+E    KPF++ ED   RV       K + RR+L+ L
Sbjct: 135 SLELLPGIGKKHMWSIIEEREKKPFENFEDLKKRVKGLPDPVKMIARRILDEL 187


>gi|222110587|ref|YP_002552851.1| hypothetical protein Dtpsy_1387 [Acidovorax ebreus TPSY]
 gi|221730031|gb|ACM32851.1| conserved hypothetical protein [Acidovorax ebreus TPSY]
          Length = 114

 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  ++G+G   +  I+   A  PF    D  +RV  K +       L
Sbjct: 34  LDGVRGIGPAMSSRILAERARGPFQDWSDLIARV--KGIGPSAAARL 78


>gi|171317870|ref|ZP_02907047.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
 gi|171096939|gb|EDT41809.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
          Length = 201

 Score = 44.0 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV 872
           +L ++KG+G   ++ I++    + PF   +D  SRV
Sbjct: 33  ALESVKGLGPVKSKAIIDERTKNGPFKDADDLASRV 68


>gi|170024276|ref|YP_001720781.1| phosphotransferase domain-containing protein [Yersinia
           pseudotuberculosis YPIII]
 gi|169750810|gb|ACA68328.1| PHP domain protein [Yersinia pseudotuberculosis YPIII]
          Length = 311

 Score = 44.0 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 16/128 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------FSALEFSQKACAAGI 67
           L  H++ S  +G L+ + ++ + A  +   +AITD +         +A+E  Q A    +
Sbjct: 31  LHSHTTAS--DGTLTPSELVIRAAQMRVGVLAITDHDTTAGLAEAAAAIEQHQLA----L 84

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL-VSTAEGYQRLIELVSR---MYLLD 123
           + I G ++    +++             V    LL   +   YQR  E+ +R    +++ 
Sbjct: 85  RLIPGVEISTLWENHEIHIVGLGIDVQHVSLRTLLEAQSEHRYQRAQEISTRLEKAHIVG 144

Query: 124 QGKQSVRI 131
             + + R+
Sbjct: 145 AWEGANRL 152


>gi|260220848|emb|CBA28824.1| hypothetical protein Csp_A09070 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 80

 Score = 44.0 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
           L  ++G+G ++   I++A A  PF S  DF +RV
Sbjct: 19  LDGLRGLGPSSTARILQARAAGPFQSWADFMARV 52


>gi|331092197|ref|ZP_08341027.1| hypothetical protein HMPREF9477_01670 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330401969|gb|EGG81543.1| hypothetical protein HMPREF9477_01670 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 220

 Score = 44.0 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 20 YSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-ACAAGIQPII-GCQL 75
          YS  +  L L +++          I ITD +++    +++++ A   G  PI  G + 
Sbjct: 12 YS-KDSYLKLEDMVKVAKRRGLGGICITDHDDM-GLKQYAEEYAKKVGF-PIFVGIEF 66


>gi|148239609|ref|YP_001224996.1| metal-dependent phosphoesterase [Synechococcus sp. WH 7803]
 gi|147848148|emb|CAK23699.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Synechococcus sp. WH 7803]
          Length = 218

 Score = 44.0 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
            H+  S  +G+L   +++ + +++    +A+TD ++
Sbjct: 27 HCHTICS--DGSLEPKDLIQQASSNGLRHLAVTDHHS 61


>gi|84685169|ref|ZP_01013068.1| hypothetical protein 1099457000257_RB2654_09889 [Maritimibacter
          alkaliphilus HTCC2654]
 gi|84666901|gb|EAQ13372.1| hypothetical protein RB2654_09889 [Rhodobacterales bacterium
          HTCC2654]
          Length = 307

 Score = 44.0 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS+  L +GAL    +  +  A+    IA+TD 
Sbjct: 17 LHTHSN--LSDGALDPGEVCRRYQAEGYDFIALTDH 50


>gi|221198115|ref|ZP_03571161.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Burkholderia multivorans CGD2M]
 gi|221208394|ref|ZP_03581397.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Burkholderia multivorans CGD2]
 gi|221171807|gb|EEE04251.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Burkholderia multivorans CGD2]
 gi|221182047|gb|EEE14448.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Burkholderia multivorans CGD2M]
          Length = 207

 Score = 44.0 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV 872
           +L ++KG+G   ++ I++    + PF   +D  +RV
Sbjct: 33  ALESVKGLGPVKSKAIIDERTKNGPFKDADDLATRV 68


>gi|221215146|ref|ZP_03588113.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Burkholderia multivorans CGD1]
 gi|221165082|gb|EED97561.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Burkholderia multivorans CGD1]
          Length = 207

 Score = 44.0 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV 872
           +L ++KG+G   ++ I++    + PF   +D  +RV
Sbjct: 33  ALESVKGLGPVKSKAIIDERTKNGPFKDADDLATRV 68


>gi|161524601|ref|YP_001579613.1| hypothetical protein Bmul_1428 [Burkholderia multivorans ATCC
           17616]
 gi|189350643|ref|YP_001946271.1| putative DNA uptake protein and related DNA-binding protein
           [Burkholderia multivorans ATCC 17616]
 gi|160342030|gb|ABX15116.1| conserved hypothetical protein [Burkholderia multivorans ATCC
           17616]
 gi|189334665|dbj|BAG43735.1| putative DNA uptake protein and related DNA-binding protein
           [Burkholderia multivorans ATCC 17616]
          Length = 207

 Score = 44.0 bits (102), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV 872
           +L ++KG+G   ++ I++    + PF   +D  +RV
Sbjct: 33  ALESVKGLGPVKSKAIIDERTKNGPFKDADDLATRV 68


>gi|330798256|ref|XP_003287170.1| hypothetical protein DICPUDRAFT_94345 [Dictyostelium purpureum]
 gi|325082822|gb|EGC36292.1| hypothetical protein DICPUDRAFT_94345 [Dictyostelium purpureum]
          Length = 650

 Score = 44.0 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 9/71 (12%), Positives = 23/71 (32%), Gaps = 7/71 (9%)

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSK---QQKKTRKGSRIGW--VTFS 1021
            P+D    I      +  E+      G    +  +V      Q+  ++   ++    +  +
Sbjct: 312  PVDEEMDIF--YDFRNIEDLSNVETGTTCDVIGVVSDCNLNQRFTSKNNKQLVKSSININ 369

Query: 1022 EPAKEYEANFF 1032
            +     E  F+
Sbjct: 370  DTTGIIEVIFW 380


>gi|57640835|ref|YP_183313.1| hypothetical protein TK0900 [Thermococcus kodakarensis KOD1]
 gi|57159159|dbj|BAD85089.1| hypothetical protein, conserved, DUF655 family [Thermococcus
           kodakarensis KOD1]
          Length = 206

 Score = 44.0 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV-----DSKKLNRRVLESL 885
           SL  + G+G      I+E    +PF S ED   RV       K + +R+++ L
Sbjct: 136 SLELLPGIGKKHMWEIIEERQREPFKSFEDLKQRVKGLPDPVKMIAKRIVDEL 188


>gi|240102962|ref|YP_002959271.1| hypothetical protein TGAM_0905 [Thermococcus gammatolerans EJ3]
 gi|239910516|gb|ACS33407.1| Conserved hypothetical protein [Thermococcus gammatolerans EJ3]
          Length = 206

 Score = 44.0 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 15/71 (21%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV-----DSKKLNRRVLESLVFAGALD 892
           SL  + G+G      I+E    +PF S ED  SRV       + + +RV+         D
Sbjct: 136 SLELLPGIGKKLMWEILEERRKEPFKSFEDLKSRVKGLHDPCEMIAKRVI---------D 186

Query: 893 CF-GYSRMQLL 902
              G  R +L 
Sbjct: 187 ELQGKDRYRLF 197


>gi|28898728|ref|NP_798333.1| putative metal-dependent phosphoesterase YciV [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839759|ref|ZP_01992426.1| PHP domain containing protein [Vibrio parahaemolyticus AQ3810]
 gi|260363730|ref|ZP_05776506.1| PHP domain protein [Vibrio parahaemolyticus K5030]
 gi|260877276|ref|ZP_05889631.1| PHP domain protein [Vibrio parahaemolyticus AN-5034]
 gi|260897777|ref|ZP_05906273.1| PHP domain protein [Vibrio parahaemolyticus Peru-466]
 gi|260903497|ref|ZP_05911892.1| PHP domain protein [Vibrio parahaemolyticus AQ4037]
 gi|28806946|dbj|BAC60217.1| putative metal-dependent phosphoesterase YciV [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149746726|gb|EDM57714.1| PHP domain containing protein [Vibrio parahaemolyticus AQ3810]
 gi|308087591|gb|EFO37286.1| PHP domain protein [Vibrio parahaemolyticus Peru-466]
 gi|308090281|gb|EFO39976.1| PHP domain protein [Vibrio parahaemolyticus AN-5034]
 gi|308106755|gb|EFO44295.1| PHP domain protein [Vibrio parahaemolyticus AQ4037]
 gi|308114910|gb|EFO52450.1| PHP domain protein [Vibrio parahaemolyticus K5030]
 gi|328474708|gb|EGF45513.1| putative metal-dependent phosphoesterase YciV [Vibrio
           parahaemolyticus 10329]
          Length = 285

 Score = 44.0 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H++ S  +G L   +++D+        +AITD + +       Q        I+ I 
Sbjct: 5   LHSHTTAS--DGRLEPKDLVDRALGFDIEVLAITDHDTVDGLARAKQYVEENDLPIKIIN 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           G ++    Q+   +   G    P  P++  L
Sbjct: 63  GIEISTVWQNK-DIHIVGLNIDPENPALAAL 92


>gi|312137398|ref|YP_004004735.1| DNA polymerase ii small subunit [Methanothermus fervidus DSM 2088]
 gi|311225117|gb|ADP77973.1| DNA polymerase II small subunit [Methanothermus fervidus DSM 2088]
          Length = 470

 Score = 44.0 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 7/64 (10%), Positives = 22/64 (34%), Gaps = 8/64 (12%)

Query: 969  DVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYE 1028
            +  + +L K  +    +         +++A +V   +   T+K  +   +   +   +  
Sbjct: 106  EKLRGLLEK-RLGKIVDIKDIGDN-EVKIAGIVNEVRT--TKKNHK--IIELEDKTGK-- 157

Query: 1029 ANFF 1032
               F
Sbjct: 158  CIVF 161


>gi|304316242|ref|YP_003851387.1| PHP domain protein [Thermoanaerobacterium thermosaccharolyticum
          DSM 571]
 gi|302777744|gb|ADL68303.1| PHP domain protein [Thermoanaerobacterium thermosaccharolyticum
          DSM 571]
          Length = 243

 Score = 44.0 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 15/76 (19%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSALEF-SQKACAA----- 65
            H+ +S  +G   + + +          IAITD       F       +K         
Sbjct: 8  HTHTVFSHGKGT--IEDNVKAAIKMGLREIAITDHGPGHIFFGIRRHEYKKIRDEIDRMN 65

Query: 66 ----GIQPIIGCQLDI 77
               I+ ++G + ++
Sbjct: 66 DKYPNIRVLMGVEANL 81


>gi|115352188|ref|YP_774027.1| phosphotransferase domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115282176|gb|ABI87693.1| PHP C-terminal domain protein [Burkholderia ambifaria AMMD]
          Length = 276

 Score = 44.0 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS--ALEFSQKACAAGIQPII 71
           L  HS+ S  +G LS  ++  +  A      A+TD + +    A     +A A G++ + 
Sbjct: 5   LHCHSNVS--DGLLSPADVARRAHAGGVTLWALTDHDEIGGQAAAR--SEAEALGMRYLS 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           G ++ +           G    P+ P++V
Sbjct: 61  GVEISVTWASRTVHIV-GLHIDPSNPTLV 88


>gi|323497599|ref|ZP_08102616.1| hypothetical protein VISI1226_22270 [Vibrio sinaloensis DSM 21326]
 gi|323317348|gb|EGA70342.1| hypothetical protein VISI1226_22270 [Vibrio sinaloensis DSM 21326]
          Length = 283

 Score = 44.0 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 13/126 (10%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H++ S  +G L+ ++++D+  +     +AITD + +                ++ I 
Sbjct: 5   LHSHTTAS--DGRLAPHDLIDRALSFNLDVLAITDHDTVDGLQAAHDYIAQHQHPLKLIN 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV----STAEGYQRLI--ELVSRMYLLDQG 125
           G ++    Q+   +   G    P   ++  L+       EG   LI   L S+    +  
Sbjct: 63  GIEISTVWQNK-DIHIVGLNIDPDSEALNTLIEQQKKHREGRAELIAHRL-SKA-TREGV 119

Query: 126 KQSVRI 131
            + VR+
Sbjct: 120 LEEVRL 125


>gi|312144193|ref|YP_003995639.1| PHP domain protein [Halanaerobium sp. 'sapolanicus']
 gi|311904844|gb|ADQ15285.1| PHP domain protein [Halanaerobium sp. 'sapolanicus']
          Length = 246

 Score = 44.0 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 7/42 (16%)

Query: 14 LQVHSSYS----LLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L +HS  S    LL   +S   I++K   +    +A+TD N+
Sbjct: 8  LHIHSVLSPCADLL---MSPAEIVNKAKKEGIEVLALTDHNS 46


>gi|60280060|gb|AAX16399.1| ABC transporter [uncultured murine large bowel bacterium BAC 54B]
          Length = 595

 Score = 44.0 bits (102), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 10/71 (14%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT---NNLFSALEFSQK-ACAAGIQP 69
          L +H+  S  +G  S  +ILD+  A     IAITD    +N    ++  +  A  AG+  
Sbjct: 14 LHLHTDAS--DGKGSCQDILDEAIAKNIKCIAITDHHTVDN----VDMMKTLAKDAGVTV 67

Query: 70 IIGCQLDIDMQ 80
          I G +   +  
Sbjct: 68 ISGVEFRTEYG 78


>gi|108803083|ref|YP_643020.1| PHP-like protein [Rubrobacter xylanophilus DSM 9941]
 gi|108764326|gb|ABG03208.1| PHP-like protein [Rubrobacter xylanophilus DSM 9941]
          Length = 569

 Score = 43.6 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 18/89 (20%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT-------NNLFSALEFSQKACAA- 65
           L VH+SYS  +G  ++ ++ +   A     +   D        N L  A   ++K  A  
Sbjct: 337 LHVHTSYS--DGKGTIESMAEAAIALGYEYLVFCDHSQSLRVANGLSPA-RLAEKMEAVR 393

Query: 66  -------GIQPIIGCQLDIDMQDNLKMTN 87
                   I  + G ++DI    +L   +
Sbjct: 394 RADERYPEIHLLCGAEVDILRDGSLDYED 422


>gi|77360237|ref|YP_339812.1| hypothetical protein PSHAa1294 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875148|emb|CAI86369.1| conserved protein of unknown function ; putative conserved enzyme
           (phosphoesterase domain) [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 284

 Score = 43.6 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 29/103 (28%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP---I 70
           L  H+++S  +G LS+  +L +         AITD + + +            I+P   I
Sbjct: 6   LHSHTTHS--DGQLSVAELLHRAVDKNIDVFAITDHDTVAA------------IKPAQHI 51

Query: 71  I-----------GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           I           G ++    +   ++   G         +  L
Sbjct: 52  IDTENLPLSLITGVEISTRWES-FEIHIVGLNIDTENSDLTAL 93


>gi|302669634|ref|YP_003829594.1| cell wall binding domain-containing protein [Butyrivibrio
           proteoclasticus B316]
 gi|302394107|gb|ADL33012.1| cell wall binding domain-containing protein [Butyrivibrio
           proteoclasticus B316]
          Length = 1802

 Score = 43.6 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAA--DQQPAIAITDTNN 51
           F  L  H++YS  +GA S +   +  A   D    +A+TD +N
Sbjct: 677 FGQLHSHTNYS--DGAGSCDEAFNHAANEVDNLDFLAVTDHSN 717


>gi|187924530|ref|YP_001896172.1| PHP domain protein [Burkholderia phytofirmans PsJN]
 gi|187715724|gb|ACD16948.1| PHP domain protein [Burkholderia phytofirmans PsJN]
          Length = 276

 Score = 43.6 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G  +  ++  +  A      A+TD + L   LE    A + G+  + G 
Sbjct: 5   LHCHS--TVSDGQFAPADVARRAHAGGVTLWALTDHDELGGQLEARSTAESLGMDYLSGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVL--LVSTAEG 108
           ++ +         +          SI++  L  T  G
Sbjct: 63  EISVTWASRT--VHIVGLGIDPTSSILIDGLARTRNG 97


>gi|172061055|ref|YP_001808707.1| phosphotransferase domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171993572|gb|ACB64491.1| PHP domain protein [Burkholderia ambifaria MC40-6]
          Length = 276

 Score = 43.6 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS--ALEFSQKACAAGIQPII 71
           L  HS+ S  +G LS  ++  +  A      A+TD + +    A     +A A G++ + 
Sbjct: 5   LHCHSNVS--DGLLSPADVARRAHAGGVTLWALTDHDEIGGQAAAR--SEAEALGMRYLS 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           G ++ +           G    P+ P++V
Sbjct: 61  GVEISVTWASRTVHIV-GLHIDPSNPTLV 88


>gi|319401543|gb|EFV89753.1| PHP domain protein [Staphylococcus epidermidis FRI909]
          Length = 569

 Score = 43.6 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H++YS  +GA S+  +++   A     + ITD 
Sbjct: 336 LHMHTTYS--DGAFSIKEMIEANIAKGYEFMVITDH 369


>gi|167468904|ref|ZP_02333608.1| hypothetical protein YpesF_13629 [Yersinia pestis FV-1]
          Length = 180

 Score = 43.6 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 13/112 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------FSALEFSQKACAAGI 67
           L  H++ S  +G L+ + ++ + A  +   +AITD +         +A+E  Q A    +
Sbjct: 31  LHSHTTAS--DGTLTPSELVIRAAQMRVGVLAITDHDTTAGLAEAAAAIEQHQLA----L 84

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL-VSTAEGYQRLIELVSR 118
           + I G ++    +++             V    LL   +   YQR  E+ +R
Sbjct: 85  RLIPGVEISTLWENHEIHIVGLGIDVQHVSLRTLLEAQSEHRYQRAQEISTR 136


>gi|114767053|ref|ZP_01445950.1| hypothetical protein 1100011001291_R2601_07886 [Pelagibaca
          bermudensis HTCC2601]
 gi|114540772|gb|EAU43837.1| hypothetical protein R2601_07886 [Roseovarius sp. HTCC2601]
          Length = 306

 Score = 43.6 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 16/70 (22%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--------LEFSQKACAA 65
          L  HS  S  +G L+   +  +  A+    +A+TD      A        + F      A
Sbjct: 17 LHTHSDRS--DGCLTPQEVCRRYRAEGYDFLALTDH--FIGAYGYPITDTVPF----REA 68

Query: 66 GIQPIIGCQL 75
          G   I+G ++
Sbjct: 69 GFTTILGAEI 78


>gi|225848610|ref|YP_002728773.1| hypothetical protein SULAZ_0793 [Sulfurihydrogenibium azorense
          Az-Fu1]
 gi|225643088|gb|ACN98138.1| conserved hypothetical protein [Sulfurihydrogenibium azorense
          Az-Fu1]
          Length = 353

 Score = 43.6 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
           VH+ +S  +     ++I   +  +    + ITD +N
Sbjct: 46 HVHTQFSF-DSLGKPSDIKKAMEENSIDFVFITDHDN 81


>gi|313898926|ref|ZP_07832453.1| PHP domain protein [Clostridium sp. HGF2]
 gi|312956125|gb|EFR37766.1| PHP domain protein [Clostridium sp. HGF2]
          Length = 494

 Score = 43.6 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 11/77 (14%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT-----NNLFSALEFSQKACAAGIQ 68
           L +HS++S   G  ++  I      +    ++ITD      N++  A+  S+     G+ 
Sbjct: 210 LHIHSNFSD-RGQYNVEEIFQYAKRNHIRTVSITDLDCAKANSI--AVRMSEL---YGVT 263

Query: 69  PIIGCQLDIDMQDNLKM 85
            I G +++ D++     
Sbjct: 264 YIPGIEINCDLRGRRVR 280


>gi|217967981|ref|YP_002353487.1| PHP domain protein [Dictyoglomus turgidum DSM 6724]
 gi|217337080|gb|ACK42873.1| PHP domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 580

 Score = 43.6 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            VH+ +S  +GA +L  +++         + I+D 
Sbjct: 345 HVHTDWS--DGANTLEEMVEVAYKLGYKYVVISDH 377


>gi|91214598|ref|ZP_01251571.1| ATP-dependent DNA helicase RecG [Psychroflexus torquis ATCC 700755]
 gi|91187025|gb|EAS73395.1| ATP-dependent DNA helicase RecG [Psychroflexus torquis ATCC 700755]
          Length = 700

 Score = 43.6 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 7/58 (12%), Positives = 18/58 (31%), Gaps = 3/58 (5%)

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + K       E         +++   +   +    ++G R+    F +     E  +F
Sbjct: 45   IDKSRFYKISELQD--NSAEVQIIGKITGVRTLPMKQGKRVV-ANFQDDTGSIELVWF 99


>gi|78066615|ref|YP_369384.1| hypothetical protein Bcep18194_A5146 [Burkholderia sp. 383]
 gi|77967360|gb|ABB08740.1| hypothetical protein Bcep18194_A5146 [Burkholderia sp. 383]
          Length = 207

 Score = 43.6 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV 872
           L ++KG+G   ++ I++    + PF   +D  +RV
Sbjct: 34  LESVKGLGPVKSKAIIDERTKNGPFKDADDLANRV 68


>gi|296125704|ref|YP_003632956.1| PHP domain protein [Brachyspira murdochii DSM 12563]
 gi|296017520|gb|ADG70757.1| PHP domain protein [Brachyspira murdochii DSM 12563]
          Length = 235

 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 21/83 (25%)

Query: 14 LQVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTN--NLFSA--LEFSQKACA 64
          L  H+     +YS      ++N +L         A+AITD    +   A  + F +    
Sbjct: 7  LHTHTIVSEHAYS------TVNEMLQSAKEKGFLALAITDHGPASSDGAKSVHF-KAMHN 59

Query: 65 -----AGIQPIIGCQLDIDMQDN 82
                G++ + GC+ +I     
Sbjct: 60 LPNYINGVRLLRGCEANIIDYSG 82


>gi|90415551|ref|ZP_01223485.1| metal dependent phosphoesterase [marine gamma proteobacterium
          HTCC2207]
 gi|90332874|gb|EAS48044.1| metal dependent phosphoesterase [marine gamma proteobacterium
          HTCC2207]
          Length = 273

 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 8/64 (12%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA--CAAGIQPIIG 72
            H++ S  +G L    +++     +   ++ITD + L               G++ I G
Sbjct: 6  HCHTTAS--DGTLDPAALINLAREREIDMLSITDHDTLA----AYSTLGDIEPGLRIIPG 59

Query: 73 CQLD 76
           +L 
Sbjct: 60 IELS 63


>gi|33240406|ref|NP_875348.1| PHP family metal-dependent phosphoesterase [Prochlorococcus
          marinus subsp. marinus str. CCMP1375]
 gi|33237933|gb|AAQ00001.1| PHP family metal-dependent phosphoesterase [Prochlorococcus
          marinus subsp. marinus str. CCMP1375]
          Length = 217

 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
            HS  +L +G+++  +++ + +  +   +A+TD +N
Sbjct: 27 HCHS--TLSDGSMNPIDLIVQASKLKLKHLAVTDHHN 61


>gi|57866653|ref|YP_188309.1| hypothetical protein SERP0726 [Staphylococcus epidermidis RP62A]
 gi|57637311|gb|AAW54099.1| DNA-dependent DNA polymerase family X [Staphylococcus epidermidis
           RP62A]
          Length = 569

 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H++YS  +GA S+  +++   A     + ITD 
Sbjct: 336 LHMHTTYS--DGAFSIKEMIEANIAKGYEFMVITDH 369


>gi|298674967|ref|YP_003726717.1| PHP domain-containing protein [Methanohalobium evestigatum Z-7303]
 gi|298287955|gb|ADI73921.1| PHP domain protein [Methanohalobium evestigatum Z-7303]
          Length = 573

 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +G  ++  I D   +     +AI D 
Sbjct: 341 LHIHSNWS--DGKSTIQQIADNARSLGYEYVAICDH 374


>gi|170694766|ref|ZP_02885917.1| PHP domain protein [Burkholderia graminis C4D1M]
 gi|170140397|gb|EDT08574.1| PHP  domain protein [Burkholderia graminis C4D1M]
          Length = 285

 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 10/110 (9%)

Query: 1   LTQYLEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           L Q +  +     L  HS  ++ +G  +  ++  +  A      A+TD + L    E  +
Sbjct: 5   LLQTMMNAD----LHCHS--TVSDGQFAPADVARRAHAGGVTLWALTDHDELGGQQEARE 58

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL--LVSTAEG 108
            A   G+  + G ++ +      +  +          S+++  L  T  G
Sbjct: 59  AAAELGMDYLSGVEISVTWA--ARTVHIVGLGIDPTSSVLIDGLARTRNG 106


>gi|330967493|gb|EGH67753.1| error-prone DNA polymerase [Pseudomonas syringae pv. actinidiae str.
            M302091]
          Length = 79

 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 4/26 (15%), Positives = 8/26 (30%), Gaps = 2/26 (7%)

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
              T  G  + +VT  +         +
Sbjct: 1    PGTASG--VTFVTLEDEFGMVNVVVW 24


>gi|37679293|ref|NP_933902.1| DNA uptake protein [Vibrio vulnificus YJ016]
 gi|37198036|dbj|BAC93873.1| DNA uptake protein [Vibrio vulnificus YJ016]
          Length = 100

 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 841 AIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883
            +KGVG   A+ I++   A+ PF +++D       K + +  +E
Sbjct: 52  MLKGVGIKKAQQIVDFREANGPFKTVDDLAQ---VKGIGKSTIE 92


>gi|148380559|ref|YP_001255100.1| hypothetical protein CBO2604 [Clostridium botulinum A str. ATCC
           3502]
 gi|148290043|emb|CAL84162.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
          Length = 279

 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 39/135 (28%), Gaps = 21/135 (15%)

Query: 15  QVHSSYSLLEG-ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
             H+  S  +G   S   ++     +    I+ITD +      E         I+ I G 
Sbjct: 8   HTHT--SASDGKYSS-KELIYLAKKEGLDIISITDHDTTDGIEEALFYGKKLNIKVIPGI 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICL 133
           +L     +                           Y+    L+ + +   + +   R   
Sbjct: 65  ELSTTYNNCSIHVLGYFKG------------NN--YKN--NLI-QSFQKHKKEYRKRRAN 107

Query: 134 SWLQEIGTEGLIMLT 148
             + ++     I+++
Sbjct: 108 EIVDKLKKHFNIIIS 122


>gi|254247808|ref|ZP_04941129.1| Phosphoesterase PHP, N-terminal [Burkholderia cenocepacia PC184]
 gi|124872584|gb|EAY64300.1| Phosphoesterase PHP, N-terminal [Burkholderia cenocepacia PC184]
          Length = 279

 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS--ALEFSQKACAAGIQPII 71
           L  HS+ S  +G LS  ++  +  A      A+TD + +    A     +A A G++ + 
Sbjct: 8   LHCHSNVS--DGLLSPADVARRAHAGGVTLWALTDHDEIGGQAAAR--SEAEALGMRYLS 63

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           G ++ +           G    P  P++V
Sbjct: 64  GVEISVTWASRTVHIV-GLNIDPAHPALV 91


>gi|91772908|ref|YP_565600.1| hypothetical protein Mbur_0903 [Methanococcoides burtonii DSM 6242]
 gi|91711923|gb|ABE51850.1| DUF655 containing protein [Methanococcoides burtonii DSM 6242]
          Length = 198

 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 19/44 (43%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
           L  + G+G      I++      F  L+D   RV    + ++++
Sbjct: 127 LELLPGIGKKLMWAIIDERKKGEFKDLQDLHDRVGGVHIPQKII 170


>gi|254171910|ref|ZP_04878586.1| DNA-binding protein [Thermococcus sp. AM4]
 gi|214033806|gb|EEB74632.1| DNA-binding protein [Thermococcus sp. AM4]
          Length = 206

 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 15/71 (21%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV-----DSKKLNRRVLESLVFAGALD 892
           SL  + G+G      I+E    +PF S ED  SRV         + +RV+         D
Sbjct: 136 SLELLPGIGKKLMWEILEERRKEPFKSFEDLKSRVKGLHDPCDMIAKRVI---------D 186

Query: 893 CF-GYSRMQLL 902
              G  R +L 
Sbjct: 187 ELQGKDRYRLF 197


>gi|318041429|ref|ZP_07973385.1| metal-dependent phosphoesterase [Synechococcus sp. CB0101]
          Length = 216

 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
            H+ +S  +G+L    +  +  A     +A+TD ++  +
Sbjct: 25 HCHTIHS--DGSLRPEQLGQQALAIGLEHLAVTDHHSTAA 62


>gi|294791809|ref|ZP_06756957.1| PHP domain protein [Veillonella sp. 6_1_27]
 gi|294457039|gb|EFG25401.1| PHP domain protein [Veillonella sp. 6_1_27]
          Length = 275

 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 49/136 (36%), Gaps = 31/136 (22%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-----GIQP 69
            +HS +S  +G  +  ++L          +A+TD + +   ++  + A         I+ 
Sbjct: 6   HIHSIFS--DGVETPKDLLQHAIDCNVSMMALTDHDEIDG-IQALRAAQKKLDPNESIKI 62

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV--STAEGYQRLIELVSRMYLLDQGKQ 127
           + GC+   D +D                 I+           + LI+ ++      +GK+
Sbjct: 63  VNGCEFSADYKDKSI-------------HILGYCFDENN---KDLIDFIT----FFKGKR 102

Query: 128 SVRICLSWLQEIGTEG 143
             RI    ++    EG
Sbjct: 103 EERID-EIIRRCNNEG 117


>gi|255039387|ref|YP_003090008.1| PHP domain-containing protein [Dyadobacter fermentans DSM 18053]
 gi|254952143|gb|ACT96843.1| PHP domain protein [Dyadobacter fermentans DSM 18053]
          Length = 572

 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS+YS  +G  +L  +  +        + I D 
Sbjct: 330 LHNHSTYS--DGQHTLEQMALRCRDLGFEYLGIADH 363


>gi|307352216|ref|YP_003893267.1| DNA-directed DNA polymerase [Methanoplanus petrolearius DSM 11571]
 gi|307155449|gb|ADN34829.1| DNA-directed DNA polymerase [Methanoplanus petrolearius DSM 11571]
          Length = 498

 Score = 43.6 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 14/77 (18%)

Query: 961  FYFSGHPLDVYKPILRKMG----IKGYEESVATIRGNN--IRLAAMVVSKQQKKTRKGSR 1014
            FYF     D Y+ + R +              T R     + +  MV   +   T  G R
Sbjct: 122  FYFR----DRYEKLARYLRKRGEAIPISALTQTDRYRQDDVSVIGMVSDLRN--TANGHR 175

Query: 1015 IGWVTFSEPAKEYEANF 1031
            +      +P       F
Sbjct: 176  MAV--LEDPTDSINVLF 190


>gi|73662961|ref|YP_301742.1| hypothetical protein SSP1652 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495476|dbj|BAE18797.1| DNA polymerase X family protein [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 570

 Score = 43.6 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ +++          + ITD 
Sbjct: 337 HMHTTYS--DGAFSIEDMVKANIEKGYEFMVITDH 369


>gi|170733454|ref|YP_001765401.1| phosphotransferase domain-containing protein [Burkholderia
           cenocepacia MC0-3]
 gi|169816696|gb|ACA91279.1| PHP domain protein [Burkholderia cenocepacia MC0-3]
          Length = 279

 Score = 43.6 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS--ALEFSQKACAAGIQPII 71
           L  HS+ S  +G LS  ++  +  A      A+TD + +    A     +A A G++ + 
Sbjct: 8   LHCHSNVS--DGLLSPADVARRAHAGGVTLWALTDHDEIGGQAAAR--SEAEALGMRYLS 63

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           G ++ +           G    P  P++V
Sbjct: 64  GVEISVTWASRTVHIV-GLNIDPAHPALV 91


>gi|239627937|ref|ZP_04670968.1| PHP domain-containing protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239518083|gb|EEQ57949.1| PHP domain-containing protein [Clostridiales bacterium 1_7_47FAA]
          Length = 239

 Score = 43.6 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 14 LQVHSSYSLL---EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          L +HS  S     +  ++  NI    A     A+A+TD N   +   F   A   G+  +
Sbjct: 8  LHIHSCLSPCGDDD--MTPANIAGMAALKGLEAVALTDHNTCRNCPAFMAAAEEYGVLAV 65

Query: 71 IGCQLD 76
           G +++
Sbjct: 66 PGMEIN 71


>gi|170699293|ref|ZP_02890342.1| PHP domain protein [Burkholderia ambifaria IOP40-10]
 gi|170135785|gb|EDT04064.1| PHP  domain protein [Burkholderia ambifaria IOP40-10]
          Length = 276

 Score = 43.6 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS--ALEFSQKACAAGIQPII 71
           L  HS+ S  +G LS  ++  +  A      A+TD + +    A     +A A G++ + 
Sbjct: 5   LHCHSNVS--DGLLSPADVARRAHAGGVTLWALTDHDEIGGQAAAR--SEAEALGMRYLS 60

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           G ++ +           G    P+ P++V
Sbjct: 61  GVEISVTWASRTVHIV-GLHIDPSNPALV 88


>gi|163784375|ref|ZP_02179270.1| hypothetical protein HG1285_08141 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880358|gb|EDP73967.1| hypothetical protein HG1285_08141 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 135

 Score = 43.6 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
           +H+ +S  +     ++I   +  +    + ITD NN
Sbjct: 51 HIHTQFSF-DSLGKPSDIKKAMEENDIDFVFITDHNN 86


>gi|91776229|ref|YP_545985.1| PHP-like protein [Methylobacillus flagellatus KT]
 gi|91710216|gb|ABE50144.1| PHP-like protein [Methylobacillus flagellatus KT]
          Length = 284

 Score = 43.6 bits (101), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 5/93 (5%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          +        L  HS  ++ +G L+   ++   A      +++TD ++       +  A  
Sbjct: 1  MPSPID---LHSHS--TVSDGLLAPEALVAHAAEQGVKVLSLTDHDDTSGLAPAASAAAG 55

Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
           G++ I G ++ +  +         +      P
Sbjct: 56 HGMEFINGVEISVTWRRKTIHVVGLRVDPDHGP 88


>gi|317129870|ref|YP_004096152.1| PHP domain protein [Bacillus cellulosilyticus DSM 2522]
 gi|315474818|gb|ADU31421.1| PHP domain protein [Bacillus cellulosilyticus DSM 2522]
          Length = 574

 Score = 43.6 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S+  +++     +   +AITD 
Sbjct: 342 LHMHTTWS--DGADSIEEMIEACRNRKYDYMAITDH 375


>gi|121997359|ref|YP_001002146.1| Fis family transcriptional regulator [Halorhodospira halophila SL1]
 gi|121588764|gb|ABM61344.1| transcriptional regulator, Fis family [Halorhodospira halophila
           SL1]
          Length = 99

 Score = 43.6 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883
           GVG   A  I+E   A+ PF   ED         +    LE
Sbjct: 50  GVGEARAEAIIEEREANGPFQDAEDLSR---VSGVGPATLE 87


>gi|48477459|ref|YP_023165.1| hypothetical protein PTO0387 [Picrophilus torridus DSM 9790]
 gi|48430107|gb|AAT42972.1| hypothetical protein DUF655 [Picrophilus torridus DSM 9790]
          Length = 183

 Score = 43.6 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
           L  + G+G  +   I+E    KPF+S ED   RV S    ++++
Sbjct: 119 LELLPGLGNKSMWSILEERKKKPFESFEDISERVKSVHNPKKMI 162


>gi|67920422|ref|ZP_00513942.1| Phosphoesterase PHP, N-terminal [Crocosphaera watsonii WH 8501]
 gi|67857906|gb|EAM53145.1| Phosphoesterase PHP, N-terminal [Crocosphaera watsonii WH 8501]
          Length = 230

 Score = 43.6 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
           +H+  S  +G L+   ++++        +AITD ++    +E  + A 
Sbjct: 36 HMHTKCS--DGQLTPEQLIEQATNIGLKGLAITDHHS----VEGYKVAQ 78


>gi|257389025|ref|YP_003178798.1| PHP domain protein [Halomicrobium mukohataei DSM 12286]
 gi|257171332|gb|ACV49091.1| PHP domain protein [Halomicrobium mukohataei DSM 12286]
          Length = 577

 Score = 43.6 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 21/85 (24%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN----LFSA-------------L 56
           L  H+S+S  +G  ++  +++  AA     +AITD       +                +
Sbjct: 350 LHTHTSWS--DGRATIVEMIEGAAAFGHDYLAITDHATGPGMVGGVGLDDEQLRDQLAEI 407

Query: 57  EFSQKACAAGIQPIIGCQLDIDMQD 81
                A  AGI    G + ++    
Sbjct: 408 RA--AADEAGIDVFAGVEANVAADG 430


>gi|225018886|ref|ZP_03708078.1| hypothetical protein CLOSTMETH_02836 [Clostridium methylpentosum
          DSM 5476]
 gi|224948356|gb|EEG29565.1| hypothetical protein CLOSTMETH_02836 [Clostridium methylpentosum
          DSM 5476]
          Length = 248

 Score = 43.6 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 13/43 (30%)

Query: 14 LQVHS-----SYS-LLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  H+     +YS LLE        ++        A+AITD  
Sbjct: 7  LHTHTIASDHAYSTLLEN-------IEYAKRAGMQALAITDHG 42


>gi|149927247|ref|ZP_01915503.1| putative secreted protein [Limnobacter sp. MED105]
 gi|149823961|gb|EDM83184.1| putative secreted protein [Limnobacter sp. MED105]
          Length = 413

 Score = 43.6 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 7/47 (14%)

Query: 14  LQVHSSYSLLEGALSL-NNILDKIAADQQPAIAITDTNN-----LFS 54
           L VH++YS  + +      ++     +    +A++D +N     L  
Sbjct: 68  LHVHTNYS-TDASNRPMAEVISIAKNNGLNFLAVSDHDNHVDGDLAG 113


>gi|145592764|ref|YP_001157061.1| hypothetical protein Strop_0198 [Salinispora tropica CNB-440]
 gi|145302101|gb|ABP52683.1| PHP C-terminal domain protein [Salinispora tropica CNB-440]
          Length = 356

 Score = 43.6 bits (101), Expect = 0.19,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +HS +S  +G  S+  +           + +TD 
Sbjct: 107 HIHSDWS--DGGSSIEEMALTAVELGHEYLVLTDH 139


>gi|332042504|gb|EGI78706.1| ATP-dependent DNA helicase RecG [Lacinutrix algicola 5H-3-7-4]
          Length = 700

 Score = 43.6 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 22/82 (26%)

Query: 969  DVYKPILRKMGIKGYEESVATIRGN------------------NIRLAAMVVSKQQKKTR 1010
            D+ +  L   GI  Y++ +                         +++   + S ++   +
Sbjct: 21   DLLRKEL---GIHTYQDLINLFPNRYLDRTKYYKINQLNPSTAEVQIIGKITSFKEVAQK 77

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G R+   TF +     E  +F
Sbjct: 78   RGKRLV-ATFQDETGTMELVWF 98


>gi|291394670|ref|XP_002713802.1| PREDICTED: endonuclease/exonuclease/phosphatase family domain
           containing 1 [Oryctolagus cuniculus]
          Length = 568

 Score = 43.6 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 44/136 (32%), Gaps = 9/136 (6%)

Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            +  G+++ +A +I E       +   +  A    V + +   +K  + +   +   + +
Sbjct: 51  MTLPGVTRAVARSIVEYREYIGGFKKVEDLALVSGVGATKLEQVK--FEICVSSKGSSAQ 108

Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTTTARHIME 855
                  +    +        +P +                  L +++G+    A  I++
Sbjct: 109 HSPSSLRRDLLAEQPHHLATTVPLTPRVNINTATPAQ------LMSVRGLTEKMALSIVD 162

Query: 856 -ASADKPFDSLEDFCS 870
                 PF S+ED   
Sbjct: 163 YRREHGPFRSVEDLVR 178


>gi|229496467|ref|ZP_04390182.1| aspartyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
 gi|229316607|gb|EEN82525.1| aspartyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406]
          Length = 553

 Score = 43.6 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 6/54 (11%), Positives = 15/54 (27%), Gaps = 5/54 (9%)

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                   E      G+ + LA  V   ++        + ++   +     +  F
Sbjct: 2    YRTNTCGELRKEHIGSEVTLAGWVSKLRRMG-----AMAFLDLRDRYGITQLVF 50


>gi|108802024|ref|YP_642221.1| hypothetical protein Mmcs_5061 [Mycobacterium sp. MCS]
 gi|119871176|ref|YP_941128.1| hypothetical protein Mkms_5149 [Mycobacterium sp. KMS]
 gi|108772443|gb|ABG11165.1| PHP-like protein [Mycobacterium sp. MCS]
 gi|119697265|gb|ABL94338.1| PHP C-terminal domain protein [Mycobacterium sp. KMS]
          Length = 334

 Score = 43.6 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS++S  +G+  +  ++            +TD 
Sbjct: 100 LHVHSNWS--DGSAPIEEMMLAARDLGHEYCVLTDH 133


>gi|227825031|ref|ZP_03989863.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226905530|gb|EEH91448.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 270

 Score = 43.6 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 9/103 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +H+  S  +G+ +    +          +A+TD ++L S     + A   GI+ I G 
Sbjct: 7   LHLHTIAS--DGSWTPREAVLAAKKAGLGIMAVTDHDSLGSVAPVMKLAPKEGIEVIAGV 64

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
           ++    +                  +  L            L+
Sbjct: 65  EMCSTYEGRCFHILGYGFDCSNPILLAHLAHN-------CRLL 100


>gi|254252920|ref|ZP_04946238.1| Helix-turn-helix protein [Burkholderia dolosa AUO158]
 gi|124895529|gb|EAY69409.1| Helix-turn-helix protein [Burkholderia dolosa AUO158]
          Length = 115

 Score = 43.6 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV 872
           +L  IKG+G   A+ I++   A  PF + +D  SRV
Sbjct: 31  ALVGIKGIGPARAKAILDERGARGPFKNADDLASRV 66


>gi|78043654|ref|YP_360397.1| DNA polymerase family X protein [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995769|gb|ABB14668.1| DNA polymerase, X family [Carboxydothermus hydrogenoformans Z-2901]
          Length = 550

 Score = 43.6 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS +S  +G  S+ ++           I++ D 
Sbjct: 318 LHVHSQHS--DGINSIKDLALAAQKLGYEYISVNDH 351


>gi|295320994|gb|ADG01371.1| truncated DNA polymerase III DnaE [Clostridium botulinum F str.
            230613]
          Length = 155

 Score = 43.6 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 5/34 (14%), Positives = 15/34 (44%)

Query: 1000 MVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFFP 1033
            +++    K TR  + + ++   + ++      FP
Sbjct: 2    VILEVLIKVTRNNTIMAFLKLEDLSESILVIVFP 35


>gi|225012820|ref|ZP_03703254.1| ATP-dependent DNA helicase RecG [Flavobacteria bacterium MS024-2A]
 gi|225003094|gb|EEG41070.1| ATP-dependent DNA helicase RecG [Flavobacteria bacterium MS024-2A]
          Length = 699

 Score = 43.6 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 7/58 (12%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            + +      +E   T     +++  ++ S    + ++G R+    F +     +  +F
Sbjct: 43   IDRSRFHPIKELPTT--NAEVQIKGIITSIDYIQQKRGKRMV-ANFQDETGSMQLVWF 97


>gi|171914276|ref|ZP_02929746.1| PHP domain protein [Verrucomicrobium spinosum DSM 4136]
          Length = 581

 Score = 43.6 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             H++ S  +G  SL  + ++        + I D 
Sbjct: 343 HNHTTAS--DGVNSLEEMAEEAQELGLQYLGIADH 375


>gi|167950070|ref|ZP_02537144.1| hypothetical protein Epers_27847 [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 82

 Score = 43.6 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 46 ITDTNNLFSALEFSQKACAAGIQPIIGCQLD 76
          +TD +N     E    A  +GIQ + G ++ 
Sbjct: 37 LTDHDNTAGIDEAQLAARESGIQLLPGVEIS 67


>gi|126438003|ref|YP_001073694.1| hypothetical protein Mjls_5440 [Mycobacterium sp. JLS]
 gi|126237803|gb|ABO01204.1| PHP C-terminal domain protein [Mycobacterium sp. JLS]
          Length = 334

 Score = 43.6 bits (101), Expect = 0.20,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS++S  +G+  +  ++            +TD 
Sbjct: 100 LHVHSNWS--DGSAPIEEMMLAARDLGHEYCVLTDH 133


>gi|226362690|ref|YP_002780468.1| hypothetical protein ROP_32760 [Rhodococcus opacus B4]
 gi|226241175|dbj|BAH51523.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 338

 Score = 43.2 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS +S  +G   L  ++ + AA      AITD 
Sbjct: 100 LHTHSDWS--DGRCPLREMMRRAAALGHEYCAITDH 133


>gi|221632119|ref|YP_002521340.1| ATP-dependent DNA helicase RecG [Thermomicrobium roseum DSM 5159]
 gi|221156495|gb|ACM05622.1| ATP-dependent DNA helicase RecG [Thermomicrobium roseum DSM 5159]
          Length = 807

 Score = 43.2 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 22/80 (27%), Gaps = 4/80 (5%)

Query: 957  RVLGFYFSGHPLDVY-KPILRKMGIKGYEESVAT-IRGNNIR--LAAMVVSKQQKKTRKG 1012
              LG       L +  +  L    +            G  +   +   VV  + ++T  G
Sbjct: 138  EALGVTTVRDLLFLVPRRYLDYTQVVPIGRLGRLVRPGEEVTCSVIGEVVQIETRETSGG 197

Query: 1013 SRIGWVTFSEPAKEYEANFF 1032
             R   V   +        +F
Sbjct: 198  RRYVSVQLRDETGTIPVIWF 217


>gi|288930670|ref|YP_003434730.1| hypothetical protein Ferp_0274 [Ferroglobus placidus DSM 10642]
 gi|288892918|gb|ADC64455.1| Protein of unknown function DUF655 [Ferroglobus placidus DSM 10642]
          Length = 192

 Score = 43.2 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
           L  + G+G  T   I+E    +PF S ED   RV
Sbjct: 129 LELLPGIGKKTMWAILEERKKEPFKSFEDIAKRV 162


>gi|225851436|ref|YP_002731670.1| DNA polymerase beta family [Persephonella marina EX-H1]
 gi|225645277|gb|ACO03463.1| DNA polymerase beta family [Persephonella marina EX-H1]
          Length = 586

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAA-DQQPAIAITDT 49
           L VHS++S  +G +S+  I+D +    +   IAITD 
Sbjct: 348 LHVHSTWS--DGVVSIKEIIDFVKKKYRYDYIAITDH 382


>gi|330885050|gb|EGH19199.1| hypothetical protein Pgy4_40155 [Pseudomonas syringae pv. glycinea
            str. race 4]
          Length = 39

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 5/37 (13%), Positives = 15/37 (40%)

Query: 967  PLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVS 1003
            PL + +  L     +  ++ ++      + +A +V  
Sbjct: 1    PLALLRRQLAAKRFRSSQDLLSLENDRTLSVAGLVTC 37


>gi|319892647|ref|YP_004149522.1| Late competence protein ComEA, DNA receptor [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162343|gb|ADV05886.1| Late competence protein ComEA, DNA receptor [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464315|gb|ADX76468.1| ComE operon protein 1, putative [Staphylococcus pseudintermedius
           ED99]
          Length = 222

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  I G+G + A+ I++    + PF S+ED     + K +  +  E L
Sbjct: 172 LTQIPGIGPSKAQTIIKHREENGPFQSVEDLK---NVKGIGEKTFEKL 216


>gi|297680661|ref|XP_002818101.1| PREDICTED: endonuclease/exonuclease/phosphatase family
           domain-containing protein 1-like isoform 1 [Pongo
           abelii]
 gi|297680663|ref|XP_002818102.1| PREDICTED: endonuclease/exonuclease/phosphatase family
           domain-containing protein 1-like isoform 2 [Pongo
           abelii]
          Length = 569

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 16/66 (24%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           L +++G+    A  I++      PF S+ED   R+D            + A  LD     
Sbjct: 147 LMSVRGLSEKMALSIVDFRREHGPFRSVEDLV-RMDG-----------INAAFLDRI--- 191

Query: 898 RMQLLQ 903
           R Q+  
Sbjct: 192 RHQVFA 197


>gi|296209068|ref|XP_002751376.1| PREDICTED: endonuclease/exonuclease/phosphatase family
           domain-containing protein 1 [Callithrix jacchus]
          Length = 565

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 16/66 (24%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           L +++G+    A  I++      PF S+ED   R+D            + A  LD     
Sbjct: 147 LMSVRGLSEKMALSIVDFRREHGPFRSVEDLV-RMDG-----------INAAFLDRI--- 191

Query: 898 RMQLLQ 903
           R Q+  
Sbjct: 192 RHQVFA 197


>gi|300087793|ref|YP_003758315.1| PHP domain-containing protein [Dehalogenimonas
          lykanthroporepellens BL-DC-9]
 gi|299527526|gb|ADJ25994.1| PHP domain protein [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 220

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          L +H+ +S  +   +   +  K       AIAI D   +  ALEF +
Sbjct: 6  LHIHTFHSP-DANTTFEELTSKCRQVGLDAIAIADHGTIEGALEFLE 51


>gi|114612832|ref|XP_527721.2| PREDICTED: similar to KIAA1706 protein isoform 4 [Pan troglodytes]
 gi|114612834|ref|XP_001169567.1| PREDICTED: similar to KIAA1706 protein isoform 2 [Pan troglodytes]
 gi|114612836|ref|XP_001169584.1| PREDICTED: similar to KIAA1706 protein isoform 3 [Pan troglodytes]
          Length = 569

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 16/66 (24%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           L +++G+    A  I++      PF S+ED   R+D            + A  LD     
Sbjct: 147 LMSVRGLSEKMALSIVDFRREHGPFRSVEDLV-RMDG-----------INAAFLDRI--- 191

Query: 898 RMQLLQ 903
           R Q+  
Sbjct: 192 RHQVFA 197


>gi|114612838|ref|XP_001169508.1| PREDICTED: similar to KIAA1706 protein isoform 1 [Pan troglodytes]
          Length = 518

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 16/66 (24%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           L +++G+    A  I++      PF S+ED   R+D            + A  LD     
Sbjct: 147 LMSVRGLSEKMALSIVDFRREHGPFRSVEDLV-RMDG-----------INAAFLDRI--- 191

Query: 898 RMQLLQ 903
           R Q+  
Sbjct: 192 RHQVFA 197


>gi|22213026|gb|AAH25571.1| Endonuclease/exonuclease/phosphatase family domain containing 1
           [Mus musculus]
          Length = 569

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 16/66 (24%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           L +++G+    A  I++      PF S+ED   R+D            + A  LD     
Sbjct: 147 LMSVRGLSEKMALSIVDYRREHGPFRSVEDLV-RMDG-----------INAAFLDRI--- 191

Query: 898 RMQLLQ 903
           R Q+  
Sbjct: 192 RHQVFA 197


>gi|71043966|ref|NP_085139.2| endonuclease/exonuclease/phosphatase family domain-containing
           protein 1 [Homo sapiens]
 gi|296434489|sp|Q7L9B9|EEPD1_HUMAN RecName: Full=Endonuclease/exonuclease/phosphatase family
           domain-containing protein 1
          Length = 569

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 16/66 (24%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           L +++G+    A  I++      PF S+ED   R+D            + A  LD     
Sbjct: 147 LMSVRGLSEKMALSIVDFRREHGPFRSVEDLV-RMDG-----------INAAFLDRI--- 191

Query: 898 RMQLLQ 903
           R Q+  
Sbjct: 192 RHQVFA 197


>gi|71043968|ref|NP_080465.3| endonuclease/exonuclease/phosphatase family domain-containing
           protein 1 [Mus musculus]
 gi|123783293|sp|Q3TGW2|EEPD1_MOUSE RecName: Full=Endonuclease/exonuclease/phosphatase family
           domain-containing protein 1
 gi|74214399|dbj|BAE40436.1| unnamed protein product [Mus musculus]
 gi|148693355|gb|EDL25302.1| RIKEN cDNA 2310005P05 [Mus musculus]
          Length = 569

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 16/66 (24%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           L +++G+    A  I++      PF S+ED   R+D            + A  LD     
Sbjct: 147 LMSVRGLSEKMALSIVDYRREHGPFRSVEDLV-RMDG-----------INAAFLDRI--- 191

Query: 898 RMQLLQ 903
           R Q+  
Sbjct: 192 RHQVFA 197


>gi|12843816|dbj|BAB26125.1| unnamed protein product [Mus musculus]
          Length = 569

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 16/66 (24%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           L +++G+    A  I++      PF S+ED   R+D            + A  LD     
Sbjct: 147 LMSVRGLSEKMALSIVDYRREHGPFRSVEDLV-RMDG-----------INAAFLDRI--- 191

Query: 898 RMQLLQ 903
           R Q+  
Sbjct: 192 RHQVFA 197


>gi|50511063|dbj|BAD32517.1| mKIAA1706 protein [Mus musculus]
          Length = 607

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 16/66 (24%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           L +++G+    A  I++      PF S+ED   R+D            + A  LD     
Sbjct: 185 LMSVRGLSEKMALSIVDYRREHGPFRSVEDLV-RMDG-----------INAAFLDRI--- 229

Query: 898 RMQLLQ 903
           R Q+  
Sbjct: 230 RHQVFA 235


>gi|12697957|dbj|BAB21797.1| KIAA1706 protein [Homo sapiens]
          Length = 573

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 16/66 (24%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           L +++G+    A  I++      PF S+ED   R+D            + A  LD     
Sbjct: 151 LMSVRGLSEKMALSIVDFRREHGPFRSVEDLV-RMDG-----------INAAFLDRI--- 195

Query: 898 RMQLLQ 903
           R Q+  
Sbjct: 196 RHQVFA 201


>gi|14042026|dbj|BAB55076.1| unnamed protein product [Homo sapiens]
 gi|41388939|gb|AAH65518.1| EEPD1 protein [Homo sapiens]
 gi|51094729|gb|EAL23976.1| KIAA1706 protein [Homo sapiens]
 gi|119614469|gb|EAW94063.1| KIAA1706 protein [Homo sapiens]
 gi|168270656|dbj|BAG10121.1| KIAA1706 protein [synthetic construct]
          Length = 569

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 16/66 (24%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           L +++G+    A  I++      PF S+ED   R+D            + A  LD     
Sbjct: 147 LMSVRGLSEKMALSIVDFRREHGPFRSVEDLV-RMDG-----------INAAFLDRI--- 191

Query: 898 RMQLLQ 903
           R Q+  
Sbjct: 192 RHQVFA 197


>gi|207725361|ref|YP_002255757.1| hypothetical protein RSMK00282 [Ralstonia solanacearum MolK2]
 gi|206590597|emb|CAQ37559.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
          Length = 105

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  + GVG   ++ I+E    + P+    DF  RV    +  + L  L
Sbjct: 32  ALETLSGVGPKRSKAIVEERTKNGPYKDAADFMGRVP--GIGEKSLAKL 78


>gi|83749863|ref|ZP_00946831.1| COME operon protein 1 [Ralstonia solanacearum UW551]
 gi|207743928|ref|YP_002260320.1| hypothetical protein RSIPO_02111 [Ralstonia solanacearum IPO1609]
 gi|83723476|gb|EAP70686.1| COME operon protein 1 [Ralstonia solanacearum UW551]
 gi|206595330|emb|CAQ62257.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609]
          Length = 105

 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  + GVG   ++ I+E    + P+    DF  RV    +  + L  L
Sbjct: 32  ALETLSGVGPKRSKAIVEERTKNGPYKDAADFMGRVP--GIGEKSLAKL 78


>gi|229815190|ref|ZP_04445526.1| hypothetical protein COLINT_02236 [Collinsella intestinalis DSM
           13280]
 gi|229809200|gb|EEP44966.1| hypothetical protein COLINT_02236 [Collinsella intestinalis DSM
           13280]
          Length = 246

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L A+ GVG +TAR I+E   A+ PF ++ED         +  +  E L
Sbjct: 196 LDALPGVGPSTARAIVEDRDANGPFSTIEDLMR---VSGIGEKKFEKL 240


>gi|331266582|ref|YP_004326212.1| competence protein CelA [Streptococcus oralis Uo5]
 gi|326683254|emb|CBZ00872.1| competence protein CelA [Streptococcus oralis Uo5]
          Length = 216

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   A+  F S+++         +  + +E L
Sbjct: 165 LKQVKGLGGKRAQDIIDHREANGKFKSVDELKK---VSGIGAKTIEKL 209


>gi|322376449|ref|ZP_08050942.1| competence protein CelA [Streptococcus sp. M334]
 gi|321282256|gb|EFX59263.1| competence protein CelA [Streptococcus sp. M334]
          Length = 216

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   A+  F S+++         +  + +E L
Sbjct: 165 LKQVKGLGGKRAQDIIDHREANGKFKSVDELKK---VSGIGAKTIEKL 209


>gi|322374509|ref|ZP_08049023.1| competence protein CelA [Streptococcus sp. C300]
 gi|321280009|gb|EFX57048.1| competence protein CelA [Streptococcus sp. C300]
          Length = 217

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   A+  F S+++         +  + +E L
Sbjct: 166 LKQVKGLGGKRAQDIIDHREANGKFKSVDELKK---VSGIGAKTIEKL 210


>gi|315612963|ref|ZP_07887874.1| competence protein ComEA [Streptococcus sanguinis ATCC 49296]
 gi|315315073|gb|EFU63114.1| competence protein ComEA [Streptococcus sanguinis ATCC 49296]
          Length = 216

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   A+  F S+++         +  + +E L
Sbjct: 165 LKQVKGLGGKRAQDIIDHREANGKFKSVDELKK---VSGIGAKTIEKL 209


>gi|307706453|ref|ZP_07643262.1| comE operon protein 1 [Streptococcus mitis SK321]
 gi|307618163|gb|EFN97321.1| comE operon protein 1 [Streptococcus mitis SK321]
          Length = 216

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   A+  F S+++         +  + +E L
Sbjct: 165 LKQVKGLGGKRAQDIIDHREANGKFKSVDELKK---VSGIGAKTIEKL 209


>gi|307708589|ref|ZP_07645053.1| ComE operon protein 1 [Streptococcus mitis NCTC 12261]
 gi|307615338|gb|EFN94547.1| ComE operon protein 1 [Streptococcus mitis NCTC 12261]
          Length = 216

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   A+  F S+++         +  + +E L
Sbjct: 165 LKQVKGLGGKRAQDIIDHREANGKFKSVDELKK---VSGIGAKTIEKL 209


>gi|306829309|ref|ZP_07462499.1| competence protein CelA [Streptococcus mitis ATCC 6249]
 gi|304428395|gb|EFM31485.1| competence protein CelA [Streptococcus mitis ATCC 6249]
          Length = 217

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   A+  F S+++         +  + +E L
Sbjct: 166 LKQVKGLGGKRAQDIIDHREANGKFKSVDELKK---VSGIGAKTIEKL 210


>gi|293365202|ref|ZP_06611919.1| competence protein CelA [Streptococcus oralis ATCC 35037]
 gi|307703740|ref|ZP_07640681.1| comE operon protein 1 [Streptococcus oralis ATCC 35037]
 gi|291316652|gb|EFE57088.1| competence protein CelA [Streptococcus oralis ATCC 35037]
 gi|307622575|gb|EFO01571.1| comE operon protein 1 [Streptococcus oralis ATCC 35037]
          Length = 216

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   A+  F S+++         +  + +E L
Sbjct: 165 LKQVKGLGGKRAQDIIDHREANGKFKSVDELKK---VSGIGAKTIEKL 209


>gi|289167798|ref|YP_003446067.1| competence protein CelA [Streptococcus mitis B6]
 gi|288907365|emb|CBJ22202.1| competence protein CelA [Streptococcus mitis B6]
          Length = 209

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   A+  F S+++         +  + +E L
Sbjct: 158 LKQVKGLGGKRAQDIIDHREANGKFKSVDELKK---VSGIGAKTIEKL 202


>gi|270292942|ref|ZP_06199153.1| competence protein CelA [Streptococcus sp. M143]
 gi|270278921|gb|EFA24767.1| competence protein CelA [Streptococcus sp. M143]
          Length = 216

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   A+  F S+++         +  + +E L
Sbjct: 165 LKQVKGLGGKRAQDIIDHREANGKFKSVDELKK---VSGIGAKTIEKL 209


>gi|269796060|ref|YP_003315515.1| putative metal-dependent phosphoesterase, PHP family [Sanguibacter
           keddieii DSM 10542]
 gi|269098245|gb|ACZ22681.1| predicted metal-dependent phosphoesterase, PHP family [Sanguibacter
           keddieii DSM 10542]
          Length = 284

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 68/201 (33%), Gaps = 18/201 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G  S   ++   AA     +A+TD +      E ++ A  +G+  + G 
Sbjct: 9   LHTHSNAS--DGTESPAGVVGSAAAAGLDVVALTDHDTTAGWDEAAEAALRSGVALVRGT 66

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY-LLDQGKQSVRIC 132
           ++       + +        PT P++V      E   RL     R   ++    +   + 
Sbjct: 67  EVS-ARSAGISVHLLSYLHDPTHPALV--AQNDE--VRLAR-SDRARTMVRLLGRDFDVT 120

Query: 133 LSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGY 192
              +      G  +     +  +  A +      A   +L      G   YV    H   
Sbjct: 121 WDDVLAQTEPGTTIGRPHIADALVHAGYAPDRSAAFATILRT----GSDYYV---PHYAP 173

Query: 193 DRYRESQVVQLAYTHELPLVA 213
           D     + V+ A    +P+ A
Sbjct: 174 DALDAIRAVRAAG--GVPVFA 192


>gi|225856613|ref|YP_002738124.1| competence protein CelA [Streptococcus pneumoniae P1031]
 gi|225724609|gb|ACO20461.1| competence protein CelA [Streptococcus pneumoniae P1031]
 gi|301794093|emb|CBW36499.1| putative competence protein [Streptococcus pneumoniae INV104]
          Length = 216

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   A+  F S+++         +  + +E L
Sbjct: 165 LKQVKGLGGKRAQDIIDHREANGKFKSVDELKK---VSGIGAKTIEKL 209


>gi|168491043|ref|ZP_02715186.1| competence protein [Streptococcus pneumoniae CDC0288-04]
 gi|183574781|gb|EDT95309.1| competence protein [Streptococcus pneumoniae CDC0288-04]
          Length = 216

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   A+  F S+++         +  + +E L
Sbjct: 165 LKQVKGLGGKRAQDIIDHREANGKFKSVDELKK---VSGIGAKTIEKL 209


>gi|148984696|ref|ZP_01817964.1| competence protein CelA [Streptococcus pneumoniae SP3-BS71]
 gi|147923087|gb|EDK74202.1| competence protein CelA [Streptococcus pneumoniae SP3-BS71]
 gi|301799931|emb|CBW32514.1| putative competence protein [Streptococcus pneumoniae OXC141]
          Length = 216

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   A+  F S+++         +  + +E L
Sbjct: 165 LKQVKGLGGKRAQDIIDHREANGKFKSVDELKK---VSGIGAKTIEKL 209


>gi|146282790|ref|YP_001172943.1| phosphotransferase domain-containing protein [Pseudomonas
          stutzeri A1501]
 gi|145570995|gb|ABP80101.1| PHP domain protein [Pseudomonas stutzeri A1501]
 gi|327481128|gb|AEA84438.1| phosphotransferase domain-containing protein [Pseudomonas
          stutzeri DSM 4166]
          Length = 288

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L  HS+ S  +G L+   ++++        +A+TD + +
Sbjct: 5  LHCHSTAS--DGVLAPTKLVERAHGRGVQLLALTDHDTV 41


>gi|119898406|ref|YP_933619.1| hypothetical protein azo2115 [Azoarcus sp. BH72]
 gi|119670819|emb|CAL94732.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 283

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS  ++ +G LS   ++ +   +    +A+TD +
Sbjct: 10 LHCHS--TVSDGWLSPEEVVGRAHRNGADLLALTDHD 44


>gi|168699735|ref|ZP_02732012.1| DNA polymerase IV (family X) [Gemmata obscuriglobus UQM 2246]
          Length = 581

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 20/96 (20%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLF-----SALEFSQK----- 61
             H++YS  +G  SL ++             + D +    +       A+   ++     
Sbjct: 347 HNHTTYS--DGVASLEDMALACKKLGWEYFGVADHSQSLTIARGLPPGAVR--KQWAEID 402

Query: 62  ---ACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFP 94
              A  +G++ I G ++DI    +L  +++    F 
Sbjct: 403 RLNAQLSGVRIIKGSEVDILEDGSLDYSDELLAGFD 438


>gi|16082291|ref|NP_394754.1| hypothetical protein Ta1299 [Thermoplasma acidophilum DSM 1728]
 gi|10640643|emb|CAC12421.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 182

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
           SL  + G+G  T   I+E    KPF S  D   RV
Sbjct: 117 SLELLPGLGNKTMWAILEERKKKPFSSFADLQERV 151


>gi|323356521|ref|YP_004222917.1| histidinol phosphatase [Microbacterium testaceum StLB037]
 gi|323272892|dbj|BAJ73037.1| histidinol phosphatase [Microbacterium testaceum StLB037]
          Length = 330

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS +S  +G   +  +++   A     +A+TD 
Sbjct: 96  LHSHSEWS--DGVTPIEAMVEAGRALGHEYLALTDH 129


>gi|295101769|emb|CBK99314.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Faecalibacterium prausnitzii L2-6]
          Length = 285

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G++ ++ +    A     A+A++D +   SA          G++ I   
Sbjct: 5  LHTHSTCS--DGSVPIHRLPLMAARLGLSALALSDHDTTLSAQYAYDHPVQDGVRLIPAA 62

Query: 74 QLD 76
          +L 
Sbjct: 63 ELT 65


>gi|328956846|ref|YP_004374232.1| putative phosphoesterase [Carnobacterium sp. 17-4]
 gi|328673170|gb|AEB29216.1| putative phosphoesterase [Carnobacterium sp. 17-4]
          Length = 270

 Score = 43.2 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-CAAGIQPIIG 72
          L VHS +S  +G  S+  +LD    +    I+  D +        +++A    GI  + G
Sbjct: 5  LHVHSEFS--DGYDSIETVLDLAQQNGIEMISFVDHDTTA-TYPAAKEAGEKRGITVVPG 61

Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPS 98
           ++        +  +     +     
Sbjct: 62 IEISSYDFKRSRKVHILGYNYRYPTH 87


>gi|322388003|ref|ZP_08061610.1| competence protein CelA [Streptococcus infantis ATCC 700779]
 gi|321141276|gb|EFX36774.1| competence protein CelA [Streptococcus infantis ATCC 700779]
          Length = 213

 Score = 43.2 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++    +  F S+++         +  + +E L
Sbjct: 162 LKQVKGLGAKRAQDIIDHRESNGKFKSVDELKK---VSGIGAKTIEKL 206


>gi|296241775|ref|YP_003649262.1| hypothetical protein Tagg_0028 [Thermosphaera aggregans DSM 11486]
 gi|296094359|gb|ADG90310.1| Protein of unknown function DUF655 [Thermosphaera aggregans DSM
           11486]
          Length = 191

 Score = 43.2 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 3/96 (3%)

Query: 794 LEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDN-RIYY-SLAAIKGVGTTTAR 851
           +++   +       +  +    I+  +       F + D   I   +L  + G+G  T R
Sbjct: 64  MQIYYDDLTSMAKANLPEALKMILNENERVFVEFFNIADPVNIRLHALELLPGIGKKTMR 123

Query: 852 HIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
            I++  A + F+S ED   RV  + + + ++E L+ 
Sbjct: 124 LILDERATRRFESFEDIKQRVKVEPV-KILIERLLK 158


>gi|315656380|ref|ZP_07909269.1| conserved hypothetical protein [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
 gi|315492939|gb|EFU82541.1| conserved hypothetical protein [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
          Length = 292

 Score = 43.2 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 10/69 (14%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE----FSQKACAAGIQP- 69
           VHS+  L +G  S  ++L+K  A     I   D +  F   E          +AG++P 
Sbjct: 8  HVHSA--LSDGTDSPRDLLEKARAAGLDVIGAVDHDT-FDHWEPFRVAHAALMSAGVRPP 64

Query: 70 --IIGCQLD 76
            I+G ++ 
Sbjct: 65 AAILGTEIS 73


>gi|304390844|ref|ZP_07372796.1| PHP family metal-dependent phosphoesterase [Mobiluncus curtisii
          subsp. curtisii ATCC 35241]
 gi|304325727|gb|EFL92973.1| PHP family metal-dependent phosphoesterase [Mobiluncus curtisii
          subsp. curtisii ATCC 35241]
          Length = 292

 Score = 43.2 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 10/69 (14%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE----FSQKACAAGIQP- 69
           VHS+  L +G  S  ++L+K  A     I   D +  F   E          +AG++P 
Sbjct: 8  HVHSA--LSDGTDSPRDLLEKARAAGLDVIGAVDHDT-FDHWEPFRVAHAALMSAGVRPP 64

Query: 70 --IIGCQLD 76
            I+G ++ 
Sbjct: 65 AVILGTEIS 73


>gi|313125979|ref|YP_004036249.1| RNA-binding protein [Halogeometricum borinquense DSM 11551]
 gi|312292344|gb|ADQ66804.1| predicted RNA-binding protein [Halogeometricum borinquense DSM
           11551]
          Length = 211

 Score = 43.2 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
           L  + G+G     +I++     P++S ED   RV      R VL
Sbjct: 145 LNLLPGIGKKLRNNILDERKRGPYESFEDLEDRVSGLHHPRDVL 188


>gi|325679360|ref|ZP_08158945.1| histidinol phosphate phosphatase HisJ family [Ruminococcus albus
          8]
 gi|324108957|gb|EGC03188.1| histidinol phosphate phosphatase HisJ family [Ruminococcus albus
          8]
          Length = 282

 Score = 43.2 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 9/50 (18%)

Query: 15 QVHSSYS--LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            HSS+S    + A     + +K A     A A+TD  +    + F ++A
Sbjct: 9  HTHSSHSPDADDSAS---AMCEKAAELGMKAYALTDHCD----VNFWEEA 51


>gi|332170841|gb|AEE20096.1| hypothetical protein Krodi_2114 [Krokinobacter diaphorus 4H-3-7-5]
          Length = 116

 Score = 43.2 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKE-YEANFFP 1033
               + +   +V+ +   T  G+R+ + TF +   +  +   FP
Sbjct: 6    NKTVEIYGYLVTAKNTGTSNGNRMSFGTFLDYNGDWIDTVHFP 48


>gi|322371361|ref|ZP_08045912.1| histidinol phosphate phosphatase HisJ family protein
          [Haladaptatus paucihalophilus DX253]
 gi|320549059|gb|EFW90722.1| histidinol phosphate phosphatase HisJ family protein
          [Haladaptatus paucihalophilus DX253]
          Length = 259

 Score = 43.2 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
            HS+YS  +G   L+ ++          I +TD   +
Sbjct: 5  HTHSNYS--DGTF-LSRMVRAAEEVGLDGIGVTDHCTV 39


>gi|283850563|ref|ZP_06367851.1| PHP domain protein [Desulfovibrio sp. FW1012B]
 gi|283574134|gb|EFC22106.1| PHP domain protein [Desulfovibrio sp. FW1012B]
          Length = 574

 Score = 43.2 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H++Y+  +G  S   +     A     +AITD 
Sbjct: 344 LHAHTNYT--DGRDSPREMGLAARARGYEYLAITDH 377


>gi|229828594|ref|ZP_04454663.1| hypothetical protein GCWU000342_00658 [Shuttleworthia satelles DSM
           14600]
 gi|229793188|gb|EEP29302.1| hypothetical protein GCWU000342_00658 [Shuttleworthia satelles DSM
           14600]
          Length = 267

 Score = 43.2 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 66/228 (28%), Gaps = 47/228 (20%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN-------------NLFSALEFSQ 60
           L  H+  S      ++  +    +      + I+D               NL  A     
Sbjct: 6   LHTHTIASGHGSTATIGQMARAASERGLRLLGISDHGPATPGAAFSSYFQNLAFAPREH- 64

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFP-------TVPSIVLLVSTAEGYQRLI 113
                G++ + G + +I     L + N                P  V+      G     
Sbjct: 65  ----FGVRLLYGVEANILDGGGLDLDNSVLARLDYVIASMHRPPRSVIY----HG----- 111

Query: 114 ELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAE-KRLL 172
                    D      R    +++ +    + ++    +          +   AE K +L
Sbjct: 112 -------RDDIEAYRDRNTKDYIEAMSNPLVRIIGHPDNSQFPYCVHRLTDAAAECKVIL 164

Query: 173 TFKKL-FGDRLYVNLQRHRGYDRYRESQ-VVQLAYTHELPLVATNNSL 218
              +   G   Y    R  G D  +  + +++L     +PL+ +++S 
Sbjct: 165 EVNEASLGPDGY---HRVAGLDTEQNYRILIKLCKKKGIPLLISSDSH 209


>gi|255525939|ref|ZP_05392865.1| phosphoesterase PHP domain protein [Clostridium carboxidivorans
          P7]
 gi|255510358|gb|EET86672.1| phosphoesterase PHP domain protein [Clostridium carboxidivorans
          P7]
          Length = 59

 Score = 43.2 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
          + K   F HL      +  +G  S   +++  + +    ++ITD + ++  LE 
Sbjct: 1  MYKKGDF-HLHT----TASDGKFSPKELVNMASKENIDIMSITDHDTIYGVLEA 49


>gi|219683758|ref|YP_002470141.1| DNA-binding protein [Bifidobacterium animalis subsp. lactis AD011]
 gi|219621408|gb|ACL29565.1| putative DNA-binding protein [Bifidobacterium animalis subsp.
           lactis AD011]
          Length = 236

 Score = 43.2 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  IKG+G  TA  I+E       F SL+D    V+   +  + +E L
Sbjct: 185 LQEIKGIGPVTAARIIEYRTQHGAFASLDDL---VNVPGIGMKTVEKL 229


>gi|217966636|ref|YP_002352142.1| phosphoesterase PHP domain protein [Dictyoglomus turgidum DSM 6724]
 gi|217335735|gb|ACK41528.1| phosphoesterase PHP domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 480

 Score = 43.2 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 25/108 (23%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA----LEFSQKACAAGI 67
           VHL  HS +S  +G LS+  ++          I +TD N +        EF         
Sbjct: 192 VHL--HSYHS--DGELSIEELIKFSIKRGLDFIFLTDHNKISGFHTIEWEFY-------- 239

Query: 68  QPII-GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
            PI  G +        L +  +   P+        L +   G ++L E
Sbjct: 240 -PIYGGIEFTTFWGHFLGLGIKEYIPWD-------LANPEVGIRKLSE 279


>gi|183601709|ref|ZP_02963079.1| putative DNA-binding protein [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241190793|ref|YP_002968187.1| putative DNA-binding protein [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196199|ref|YP_002969754.1| putative DNA-binding protein [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183219315|gb|EDT89956.1| putative DNA-binding protein [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240249185|gb|ACS46125.1| putative DNA-binding protein [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250753|gb|ACS47692.1| putative DNA-binding protein [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|289178529|gb|ADC85775.1| COME operon protein 1 [Bifidobacterium animalis subsp. lactis
           BB-12]
 gi|295793782|gb|ADG33317.1| putative DNA-binding protein [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 258

 Score = 43.2 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  IKG+G  TA  I+E       F SL+D    V+   +  + +E L
Sbjct: 207 LQEIKGIGPVTAARIIEYRTQHGAFASLDDL---VNVPGIGMKTVEKL 251


>gi|15897766|ref|NP_342371.1| hypothetical protein SSO0873 [Sulfolobus solfataricus P2]
 gi|284175569|ref|ZP_06389538.1| hypothetical protein Ssol98_13075 [Sulfolobus solfataricus 98/2]
 gi|13814053|gb|AAK41161.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261602469|gb|ACX92072.1| PHP domain protein [Sulfolobus solfataricus 98/2]
          Length = 219

 Score = 43.2 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 25/99 (25%)

Query: 14  LQVHSSYSLLEGALS--LNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI---- 67
           L VHS YS  +G       +I+    A     +AITD +             + G+    
Sbjct: 5   LHVHSRYS--DG--KYLPKDIIAYAKAKHI-HVAITDHDT------------SLGLNTVK 47

Query: 68  --QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS 104
             + I G ++  +    + + N   +P   +  +V    
Sbjct: 48  EEKVIPGQEVTTEYGHVVILCNFPPSPPNRIAELVDYAK 86


>gi|300704743|ref|YP_003746346.1| hypothetical protein RCFBP_20565 [Ralstonia solanacearum CFBP2957]
 gi|299072407|emb|CBJ43752.1| conserved exported protein of unknown function [Ralstonia
           solanacearum CFBP2957]
          Length = 105

 Score = 43.2 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  + GVG   ++ I+E    + P+    DF +RV    +  + L  L
Sbjct: 32  ALETLSGVGPKRSKTIVEERTKNGPYKDAADFMARVP--GIGEKSLAKL 78


>gi|284121620|ref|ZP_06386816.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Candidatus Poribacteria sp. WGA-A3]
 gi|283829401|gb|EFC33789.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Candidatus Poribacteria sp. WGA-A3]
          Length = 106

 Score = 43.2 bits (100), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 4/45 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVL 882
           L  + G+G   A+ I+E   A+ PF S ED    +  + + ++  
Sbjct: 46  LQQLPGIGKGLAKRIVEFRTANGPFKSAEDL---MQVRGIGKKTF 87


>gi|15894377|ref|NP_347726.1| metal-dependent phosphoesterase [Clostridium acetobutylicum ATCC
          824]
 gi|15024008|gb|AAK79066.1|AE007625_10 Predicted metal-dependent phosphoesterase (PHP family), YciV
          ortholog [Clostridium acetobutylicum ATCC 824]
 gi|325508505|gb|ADZ20141.1| metal-dependent phosphoesterase (PHP family) [Clostridium
          acetobutylicum EA 2018]
          Length = 274

 Score = 43.2 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
           +H++ S  +G  +   +L+         +AITD +   S  +        GI+ + G +
Sbjct: 8  HIHTNAS--DGKYTPEKVLELAKTAGINILAITDHDTTSSVKKAIAVGNELGIKVLPGIE 65

Query: 75 LD 76
          L 
Sbjct: 66 LS 67


>gi|78066875|ref|YP_369644.1| PHP-like metal-dependent phosphoesterase [Burkholderia sp. 383]
 gi|77967620|gb|ABB09000.1| PHP-like metal-dependent phosphoesterase [Burkholderia sp. 383]
          Length = 279

 Score = 43.2 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS--ALEFSQKACAAGIQPII 71
          L  HS+ S  +G LS  ++  +  A      A+TD + +    A     +A A G++ + 
Sbjct: 8  LHCHSNVS--DGLLSPADVARRAHAGGVTLWALTDHDEIGGQAAAR--SEAEALGMRYLS 63

Query: 72 GCQLDIDMQDN 82
          G ++ +     
Sbjct: 64 GVEISVTWASR 74


>gi|90022317|ref|YP_528144.1| 30S ribosomal protein S15 [Saccharophagus degradans 2-40]
 gi|89951917|gb|ABD81932.1| protein of unknown function UPF0031 [Saccharophagus degradans 2-40]
          Length = 500

 Score = 43.2 bits (100), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 29  LNNILDKIAADQQPAIAITDTNNLFS-ALEFSQKACAAGIQPIIGCQLD 76
           +  +  +       A+AI D   L   AL+    A   G+  I G +L+
Sbjct: 72  IAALAAQ-KKLNVHAVAIADPAGLSGDALKAYNYAQQEGVTVIAGSELN 119


>gi|107028720|ref|YP_625815.1| PHP-like [Burkholderia cenocepacia AU 1054]
 gi|116690121|ref|YP_835744.1| phosphotransferase domain-containing protein [Burkholderia
           cenocepacia HI2424]
 gi|105897884|gb|ABF80842.1| PHP-like protein [Burkholderia cenocepacia AU 1054]
 gi|116648210|gb|ABK08851.1| PHP C-terminal domain protein [Burkholderia cenocepacia HI2424]
          Length = 279

 Score = 43.2 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS+ S  +G LS  ++  +  A      A+TD + +        +A A G++ + G 
Sbjct: 8   LHCHSNVS--DGLLSPADVARRAHAGGVTLWALTDHDEIGGQATARSEAEALGMRYLSGV 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           ++ +           G    P  P++V
Sbjct: 66  EISVTWASRTVHIV-GLNIDPAHPALV 91


>gi|87124472|ref|ZP_01080321.1| hypothetical protein RS9917_12700 [Synechococcus sp. RS9917]
 gi|86168044|gb|EAQ69302.1| hypothetical protein RS9917_12700 [Synechococcus sp. RS9917]
          Length = 218

 Score = 43.2 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 5/44 (11%)

Query: 15 QVHSSYSLL-EGALSLNNILDKIAADQQPAIAITDTNNLFSALE 57
            H+   L  +G+LS + ++ +        +A+TD ++  +A  
Sbjct: 27 HCHT---LCSDGSLSPDALIRQARDQGLQHLAVTDHHS-AAAFR 66


>gi|229525788|ref|ZP_04415193.1| hypothetical protein VCA_003424 [Vibrio cholerae bv. albensis
          VL426]
 gi|229339369|gb|EEO04386.1| hypothetical protein VCA_003424 [Vibrio cholerae bv. albensis
          VL426]
          Length = 290

 Score = 43.2 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++D+  + +   +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQQLIDRAVSFEIDVLAITDHDTVAALADARAYIALQQYPLQLVN 62

Query: 72 GCQLD 76
          G ++ 
Sbjct: 63 GIEIS 67


>gi|307704922|ref|ZP_07641813.1| comE operon protein 1 [Streptococcus mitis SK597]
 gi|307621536|gb|EFO00582.1| comE operon protein 1 [Streptococcus mitis SK597]
          Length = 215

 Score = 43.2 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++    +  F S+++         +  + +E L
Sbjct: 164 LKQVKGLGGKRAQDIIDHRETNGKFKSVDELKK---VSGIGAKTIEKL 208


>gi|307709136|ref|ZP_07645595.1| comE operon protein 1 [Streptococcus mitis SK564]
 gi|307620082|gb|EFN99199.1| comE operon protein 1 [Streptococcus mitis SK564]
          Length = 216

 Score = 43.2 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++    +  F S+++         +  + +E L
Sbjct: 165 LKQVKGLGGKRAQDIIDHRETNGKFKSVDELKK---VSGIGAKTIEKL 209


>gi|301801791|emb|CBW34502.1| putative competence protein [Streptococcus pneumoniae INV200]
          Length = 212

 Score = 43.2 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++    +  F S+++         +  + +E L
Sbjct: 161 LKQVKGLGGKRAQDIIDHRESNGKFKSVDELKK---VSGIGAKTIEKL 205


>gi|290559667|gb|EFD92993.1| conserved hypothetical protein [Candidatus Parvarchaeum acidophilus
           ARMAN-5]
          Length = 190

 Score = 43.2 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 834 RIYY-SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
            +   S   + GVG    + I+E      F S EDF  RV 
Sbjct: 109 NVRLHSFHLLPGVGKKIVQKILEERTKAKFKSYEDFNERVG 149


>gi|62078909|ref|NP_001014110.1| endonuclease/exonuclease/phosphatase family domain-containing
           protein 1 [Rattus norvegicus]
 gi|81883711|sp|Q5XI74|EEPD1_RAT RecName: Full=Endonuclease/exonuclease/phosphatase family
           domain-containing protein 1
 gi|53733575|gb|AAH83816.1| Endonuclease/exonuclease/phosphatase family domain containing 1
           [Rattus norvegicus]
 gi|68533864|gb|AAH99214.1| Endonuclease/exonuclease/phosphatase family domain containing 1
           [Rattus norvegicus]
 gi|149027895|gb|EDL83355.1| similar to RIKEN cDNA 2310005P05 [Rattus norvegicus]
          Length = 569

 Score = 43.2 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 16/66 (24%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           L +++G+    A  I++      PF S+ED   R+D            + A  LD     
Sbjct: 147 LMSVRGLSEKMAVSIVDYRREHGPFRSVEDLV-RMDG-----------INAAFLDRI--- 191

Query: 898 RMQLLQ 903
           R Q+  
Sbjct: 192 RHQVFA 197


>gi|22125942|ref|NP_669365.1| hypothetical protein y2052 [Yersinia pestis KIM 10]
 gi|108807564|ref|YP_651480.1| hypothetical protein YPA_1569 [Yersinia pestis Antiqua]
 gi|108811840|ref|YP_647607.1| hypothetical protein YPN_1678 [Yersinia pestis Nepal516]
 gi|145598221|ref|YP_001162297.1| hypothetical protein YPDSF_0924 [Yersinia pestis Pestoides F]
 gi|165927360|ref|ZP_02223192.1| PHP domain protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165938264|ref|ZP_02226823.1| PHP domain protein [Yersinia pestis biovar Orientalis str. IP275]
 gi|166010684|ref|ZP_02231582.1| PHP domain protein [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166210749|ref|ZP_02236784.1| PHP domain protein [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167400776|ref|ZP_02306282.1| PHP domain protein [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167420381|ref|ZP_02312134.1| PHP domain protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424991|ref|ZP_02316744.1| PHP domain protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|186895508|ref|YP_001872620.1| phosphotransferase domain-containing protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|270490616|ref|ZP_06207690.1| PHP domain protein [Yersinia pestis KIM D27]
 gi|294503751|ref|YP_003567813.1| hypothetical protein YPZ3_1641 [Yersinia pestis Z176003]
 gi|21958882|gb|AAM85616.1|AE013807_10 putative enzyme [Yersinia pestis KIM 10]
 gi|108775488|gb|ABG18007.1| hypothetical protein YPN_1678 [Yersinia pestis Nepal516]
 gi|108779477|gb|ABG13535.1| hypothetical protein YPA_1569 [Yersinia pestis Antiqua]
 gi|145209917|gb|ABP39324.1| hypothetical protein YPDSF_0924 [Yersinia pestis Pestoides F]
 gi|165913925|gb|EDR32543.1| PHP domain protein [Yersinia pestis biovar Orientalis str. IP275]
 gi|165920626|gb|EDR37874.1| PHP domain protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990386|gb|EDR42687.1| PHP domain protein [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166207929|gb|EDR52409.1| PHP domain protein [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166962076|gb|EDR58097.1| PHP domain protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167049629|gb|EDR61037.1| PHP domain protein [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167056178|gb|EDR65956.1| PHP domain protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|186698534|gb|ACC89163.1| PHP domain protein [Yersinia pseudotuberculosis PB1/+]
 gi|262362129|gb|ACY58850.1| hypothetical protein YPD4_1943 [Yersinia pestis D106004]
 gi|262365458|gb|ACY62015.1| hypothetical protein YPD8_1330 [Yersinia pestis D182038]
 gi|270339120|gb|EFA49897.1| PHP domain protein [Yersinia pestis KIM D27]
 gi|294354210|gb|ADE64551.1| hypothetical protein YPZ3_1641 [Yersinia pestis Z176003]
          Length = 311

 Score = 43.2 bits (100), Expect = 0.26,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 13/112 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------FSALEFSQKACAAGI 67
           L  H++ S  +G L+ + ++ + A  +   +AITD +         +A+E  Q A    +
Sbjct: 31  LHSHTTAS--DGTLTPSELVIRAAQMRVGVLAITDHDTTAGLAEAAAAIEQHQLA----L 84

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL-VSTAEGYQRLIELVSR 118
           + I G ++    +++             V    LL   +   YQR  E+ +R
Sbjct: 85  RLIPGVEISTLWENHEIHIVGLGIDVQHVSLRTLLEAQSEHRYQRAQEISTR 136


>gi|309781238|ref|ZP_07675975.1| PHP domain protein [Ralstonia sp. 5_7_47FAA]
 gi|308920059|gb|EFP65719.1| PHP domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 286

 Score = 42.9 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 14/98 (14%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA----GIQP 69
           L  HS  ++ +G L+ + +  + AA      A+TD + +         A  A    G+  
Sbjct: 14  LHCHS--TVSDGMLAPHEVAARAAAHGVTLWALTDHDEVGG----QAAAREAATVLGMDY 67

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
           + G ++ +                        L    E
Sbjct: 68  LSGVEISVTWAGRTLHIVGLGIDPDNAD----LAQGLE 101


>gi|124486408|ref|YP_001031024.1| GTP:adenosylcobinamide-phosphate guanylyltransferase-like protein
          [Methanocorpusculum labreanum Z]
 gi|124363949|gb|ABN07757.1| PHP C-terminal domain protein [Methanocorpusculum labreanum Z]
          Length = 253

 Score = 42.9 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 7/83 (8%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
           VHS+ S  +G      +   +  +   A AITD N +F   E    +       I G +
Sbjct: 2  HVHSTAS--DGRTQPKTLAKYLNKNDISA-AITDHNVIFGVKEALDYSENV----IPGIE 54

Query: 75 LDIDMQDNLKMTNQGKTPFPTVP 97
          +      ++ +  +      +  
Sbjct: 55 VSALEGPHVLVYFETYRDLASYY 77


>gi|242242443|ref|ZP_04796888.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus
           epidermidis W23144]
 gi|242234093|gb|EES36405.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus
           epidermidis W23144]
          Length = 466

 Score = 42.9 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H++YS  +GA S+  +++   A     + ITD 
Sbjct: 233 LHMHTTYS--DGAFSIKEMIEANIAKGYEFMVITDH 266


>gi|123966195|ref|YP_001011276.1| metal-dependent phosphoesterase [Prochlorococcus marinus str. MIT
          9515]
 gi|123200561|gb|ABM72169.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Prochlorococcus marinus str. MIT 9515]
          Length = 215

 Score = 42.9 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 15/71 (21%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI------- 67
            H+ +S  +G+     +LD++  ++   IAITD +     ++         I       
Sbjct: 25 HCHTKFS--DGSFEPEQLLDQVFINKLKFIAITDHHT----VKAHTFIEKNNILKKYPSD 78

Query: 68 --QPIIGCQLD 76
              I G +++
Sbjct: 79 SFNLISGIEIN 89


>gi|153004247|ref|YP_001378572.1| phosphotransferase domain-containing protein [Anaeromyxobacter
          sp. Fw109-5]
 gi|152027820|gb|ABS25588.1| PHP domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 259

 Score = 42.9 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 14 LQVHSSYSLLEG-ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-CAAGIQPII 71
          L VHS +S   G  L+    L +        +  TD N L   LE  + A    GI  ++
Sbjct: 5  LHVHSHHS--RGSTLAPREALRRAKQAGLDGVVFTDLNTLDG-LEEIRAAGREEGILALV 61

Query: 72 GCQLDIDMQD 81
          G ++  D   
Sbjct: 62 GVEVATDHGH 71


>gi|89100805|ref|ZP_01173657.1| ComEA [Bacillus sp. NRRL B-14911]
 gi|89084451|gb|EAR63600.1| ComEA [Bacillus sp. NRRL B-14911]
          Length = 136

 Score = 42.9 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  I G+G + A  I+E    + PF SLED    +    +  +  E L
Sbjct: 85  LQDIPGIGPSKAAAIIEYRETEGPFQSLEDL---MQISGIGEKTFEKL 129


>gi|296331593|ref|ZP_06874062.1| hypothetical protein BSU6633_10823 [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675448|ref|YP_003867120.1| DNA polymerase X [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151188|gb|EFG92068.1| hypothetical protein BSU6633_10823 [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413692|gb|ADM38811.1| DNA polymerase X [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 570

 Score = 42.9 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 73/221 (33%), Gaps = 46/221 (20%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT-------NNLFSALEFSQKACA-- 64
           L +HS++S  +GA S+  + +         +AITD        N L  A    Q+A    
Sbjct: 338 LHMHSTWS--DGAFSIREMAEACMNKGYQYMAITDHSQYLKVANGLT-AERLKQQAKEID 394

Query: 65  ------AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSR 118
                    + + G ++DI     L   +             +L          +++V  
Sbjct: 395 VLNAEFKNFRILKGVEMDILPDGTLDYDDD------------VLAE--------MDIV-I 433

Query: 119 MYLLDQGKQSVRICLSWLQ-EIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKL 177
             +     Q   + +  L+  +  + + ++   +   I R       ++   +L+   K 
Sbjct: 434 ASIHSSFNQPEHVIMKRLETALANKHVDIIAHPTGRLIGR---RAGYEIDIDKLIELAK- 489

Query: 178 FGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSL 218
                 + L  +      R   +++ A    + LV   ++ 
Sbjct: 490 -KTNTALELNANPARLDLRTEHLIK-ANEQGVTLVINTDAH 528


>gi|309775292|ref|ZP_07670301.1| putative PHP domain protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916955|gb|EFP62686.1| putative PHP domain protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 504

 Score = 42.9 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 11/77 (14%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT-----NNLFSALEFSQKACAAGIQ 68
           L +HS++S   G  ++  I      ++   I+ITD      N++  A+  S+     G+ 
Sbjct: 220 LHIHSNFSD-RGQYNVEEIFQYAKRNRIQTISITDLDCAKANSI--AVRMSEL---YGVT 273

Query: 69  PIIGCQLDIDMQDNLKM 85
            I G +++ D+      
Sbjct: 274 YIPGIEINCDLHGRRIR 290


>gi|162421523|ref|YP_001606746.1| phosphotransferase domain-containing protein [Yersinia pestis
           Angola]
 gi|162354338|gb|ABX88286.1| PHP domain protein [Yersinia pestis Angola]
          Length = 310

 Score = 42.9 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 13/112 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------FSALEFSQKACAAGI 67
           L  H++ S  +G L+ + ++ + A  +   +AITD +         +A+E  Q A    +
Sbjct: 28  LHSHTTAS--DGTLTPSELVIRAAQMRVGVLAITDHDTTAGLAEAAAAIEQHQLA----L 81

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL-VSTAEGYQRLIELVSR 118
           + I G ++    +++             V    LL   +   YQR  E+ +R
Sbjct: 82  RLIPGVEISTLWENHEIHIVGLGIDVQHVSLRTLLEAQSEHRYQRAQEISTR 133


>gi|87119435|ref|ZP_01075332.1| Phosphoesterase PHP, N-terminal:PHP, C-terminal [Marinomonas sp.
          MED121]
 gi|86164911|gb|EAQ66179.1| Phosphoesterase PHP, N-terminal:PHP, C-terminal [Marinomonas sp.
          MED121]
          Length = 262

 Score = 42.9 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 26 ALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDI 77
           L+   +L K    +    ++TD + L    E +  A A GI  + G +L +
Sbjct: 1  MLTPTELLTKAKEQEVELFSLTDHDTLTGLEEAAIAAKALGIMLVPGVELSV 52


>gi|296123210|ref|YP_003630988.1| DNA-binding protein [Planctomyces limnophilus DSM 3776]
 gi|296015550|gb|ADG68789.1| Helix-hairpin-helix DNA-binding class 1 [Planctomyces limnophilus
           DSM 3776]
          Length = 150

 Score = 42.9 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLES 884
              + G+G T AR I+       PF S++D       + L  +++E 
Sbjct: 89  FLQLDGIGETLARRIVADRDERGPFQSVDDLVR---VRGLGEKMIER 132


>gi|206560534|ref|YP_002231299.1| putative phosphoesterase [Burkholderia cenocepacia J2315]
 gi|198036576|emb|CAR52473.1| putative phosphoesterase [Burkholderia cenocepacia J2315]
          Length = 279

 Score = 42.9 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS--ALEFSQKACAAGIQPII 71
           L  HS+ S  +G LS  ++  +  A      A+TD + +    A     +A A G++ + 
Sbjct: 8   LHCHSNVS--DGLLSPADVARRAHAGGVTLWALTDHDEIGGQAAAR--SEAEALGMRYLS 63

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           G ++ +           G    P  P++V
Sbjct: 64  GVEISVTWASRTVHIV-GLHIDPAHPALV 91


>gi|46579395|ref|YP_010203.1| hypothetical protein DVU0982 [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|120603049|ref|YP_967449.1| hypothetical protein Dvul_2006 [Desulfovibrio vulgaris DP4]
 gi|46448809|gb|AAS95462.1| PHP domain protein [Desulfovibrio vulgaris str. Hildenborough]
 gi|120563278|gb|ABM29022.1| PHP C-terminal domain protein [Desulfovibrio vulgaris DP4]
 gi|311233218|gb|ADP86072.1| PHP domain protein [Desulfovibrio vulgaris RCH1]
          Length = 219

 Score = 42.9 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           VH+++S  +  ++    +         A+A+TD 
Sbjct: 5  HVHTTFS--DSTMTPAVAVRHAKMAGYRAVALTDH 37


>gi|34556584|ref|NP_906399.1| hypothetical protein WS0136 [Wolinella succinogenes DSM 1740]
 gi|34556757|ref|NP_906572.1| competence proetin 1 [Wolinella succinogenes DSM 1740]
 gi|34482298|emb|CAE09299.1| hypothetical protein WS0136 [Wolinella succinogenes]
 gi|34482471|emb|CAE09472.1| COMPETENCE PROETIN 1 [Wolinella succinogenes]
          Length = 81

 Score = 42.9 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A  I+E    +  F SLE+       K    + +E L
Sbjct: 30  LMKVKGIGEKKAEAIIEHRTKNGAFKSLEELK---SVKGFGEKSVEGL 74


>gi|45441808|ref|NP_993347.1| hypothetical protein YP_2008 [Yersinia pestis biovar Microtus str.
           91001]
 gi|51596459|ref|YP_070650.1| hypothetical protein YPTB2133 [Yersinia pseudotuberculosis IP
           32953]
 gi|149365870|ref|ZP_01887905.1| hypothetical protein YPE_1048 [Yersinia pestis CA88-4125]
 gi|153948700|ref|YP_001400905.1| phosphotransferase domain-containing protein [Yersinia
           pseudotuberculosis IP 31758]
 gi|218929307|ref|YP_002347182.1| hypothetical protein YPO2211 [Yersinia pestis CO92]
 gi|229894894|ref|ZP_04510072.1| conserved protein [Yersinia pestis Pestoides A]
 gi|229897637|ref|ZP_04512793.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229898282|ref|ZP_04513429.1| conserved protein [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229902141|ref|ZP_04517262.1| conserved protein [Yersinia pestis Nepal516]
 gi|45436670|gb|AAS62224.1| conserved hypothetical protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51589741|emb|CAH21371.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|115347918|emb|CAL20840.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|149292283|gb|EDM42357.1| hypothetical protein YPE_1048 [Yersinia pestis CA88-4125]
 gi|152960195|gb|ABS47656.1| PHP domain protein [Yersinia pseudotuberculosis IP 31758]
 gi|229681037|gb|EEO77132.1| conserved protein [Yersinia pestis Nepal516]
 gi|229688572|gb|EEO80641.1| conserved protein [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229693974|gb|EEO84023.1| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701989|gb|EEO90010.1| conserved protein [Yersinia pestis Pestoides A]
          Length = 299

 Score = 42.9 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 13/112 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------FSALEFSQKACAAGI 67
           L  H++ S  +G L+ + ++ + A  +   +AITD +         +A+E  Q A    +
Sbjct: 19  LHSHTTAS--DGTLTPSELVIRAAQMRVGVLAITDHDTTAGLAEAAAAIEQHQLA----L 72

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL-VSTAEGYQRLIELVSR 118
           + I G ++    +++             V    LL   +   YQR  E+ +R
Sbjct: 73  RLIPGVEISTLWENHEIHIVGLGIDVQHVSLRTLLEAQSEHRYQRAQEISTR 124


>gi|87309479|ref|ZP_01091614.1| competence protein ComEA-related protein [Blastopirellula marina
           DSM 3645]
 gi|87287787|gb|EAQ79686.1| competence protein ComEA-related protein [Blastopirellula marina
           DSM 3645]
          Length = 146

 Score = 42.9 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  + G+G T AR I+E+     PF    D   RV  + +  R LE L
Sbjct: 77  LTQLPGIGETLARRIIESRETLGPFLDHNDL-QRV--RGIGPRTLERL 121


>gi|291614511|ref|YP_003524668.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Sideroxydans lithotrophicus ES-1]
 gi|291584623|gb|ADE12281.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Sideroxydans lithotrophicus ES-1]
          Length = 153

 Score = 42.9 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDF 868
           L A+KG+G   A+ I++    + PF S+ED 
Sbjct: 32  LDAVKGIGPAKAQAIIDYRTKNGPFASVEDL 62


>gi|241767650|ref|ZP_04765292.1| phosphoesterase PHP domain protein [Acidovorax delafieldii 2AN]
 gi|241361422|gb|EER57905.1| phosphoesterase PHP domain protein [Acidovorax delafieldii 2AN]
          Length = 97

 Score = 42.9 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS  S  +G L+  ++  +  A+     ++TD +
Sbjct: 9  LHCHSVVS--DGTLAPEDLAARAKANGVELWSLTDHD 43


>gi|258406109|ref|YP_003198851.1| glycosyl transferase group 1 [Desulfohalobium retbaense DSM 5692]
 gi|257798336|gb|ACV69273.1| glycosyl transferase group 1 [Desulfohalobium retbaense DSM 5692]
          Length = 820

 Score = 42.9 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 17/69 (24%)

Query: 1  LTQYLEKSPSFVHLQVHSSYS------LL------EGALSLNNILDKIAADQQPAIAITD 48
          ++  ++       L VHS +S      +L      E       + D         + ITD
Sbjct: 1  MSASMQCD-----LHVHSKFSKRPSQWILQKINCPESFTEPKRLYDIARQRGMDLVTITD 55

Query: 49 TNNLFSALE 57
           N L  +LE
Sbjct: 56 HNTLAGSLE 64


>gi|315426861|dbj|BAJ48482.1| DNA polymerase II small subunit [Candidatus Caldiarchaeum
            subterraneum]
          Length = 492

 Score = 42.9 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 62/169 (36%), Gaps = 30/169 (17%)

Query: 876  KLNRRVLESL--------VFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIF 927
            +L  R L  L            A++    +R +    + +++   Q VEK   +      
Sbjct: 22   QLTERALRRLEEYSNPFQALTSAIERLKKNRPEA--VVIDVEDLQQPVEKPAESSPPP-- 77

Query: 928  AHEKGTFSDKITLEKFSVENSSVRFE---NEQRVLGFYFSG-HPLDVYKPIL--RKMGIK 981
                        LE  SV ++  R E    E R   ++ S  H   + K IL  R++   
Sbjct: 78   --ASEKPIHVPRLETISVIDNDYRIEGDIAEFRS--YFLSRYH---LIKRILSKRRLEFT 130

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
               E  A   G    +A M++SK++     G+    +T  +P+ + E  
Sbjct: 131  PVSEVPAIRDGGETVVAVMILSKKEGP---GN--IKITCDDPSGQLEVV 174


>gi|75907184|ref|YP_321480.1| PHP-like protein [Anabaena variabilis ATCC 29413]
 gi|75700909|gb|ABA20585.1| PHP-like protein [Anabaena variabilis ATCC 29413]
          Length = 228

 Score = 42.9 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +H+ YS  +G L  + ++++  A      AITD + +       + A A
Sbjct: 34 HMHTVYS--DGRLQPSVLMEQAIAIGLQGFAITDHHTVGG----YEAAQA 77


>gi|327275223|ref|XP_003222373.1| PREDICTED: endonuclease/exonuclease/phosphatase family
           domain-containing protein 1-like isoform 2 [Anolis
           carolinensis]
          Length = 519

 Score = 42.9 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
           L +I+G+    A  I+E   +  PF S+ED   
Sbjct: 138 LMSIRGITEKIAHGIVEYRKEHGPFKSIEDLVK 170


>gi|327275221|ref|XP_003222372.1| PREDICTED: endonuclease/exonuclease/phosphatase family
           domain-containing protein 1-like isoform 1 [Anolis
           carolinensis]
          Length = 556

 Score = 42.9 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
           L +I+G+    A  I+E   +  PF S+ED   
Sbjct: 138 LMSIRGITEKIAHGIVEYRKEHGPFKSIEDLVK 170


>gi|320014875|gb|ADV98446.1| conserved protein [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 299

 Score = 42.9 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 13/112 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL------FSALEFSQKACAAGI 67
           L  H++ S  +G L+ + ++ + A  +   +AITD +         +A+E  Q A    +
Sbjct: 19  LHSHTTAS--DGTLTPSELVIRAAQMRVGVLAITDHDTTAGLAEAAAAIEQHQLA----L 72

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL-VSTAEGYQRLIELVSR 118
           + I G ++    +++             V    LL   +   YQR  E+ +R
Sbjct: 73  RLIPGVEISTLWENHEIHIVGLGIDVQHVSLRTLLEAQSEHRYQRAQEISTR 124


>gi|45357571|ref|NP_987128.1| DNA polymerase II small subunit [Methanococcus maripaludis S2]
 gi|45047131|emb|CAF29564.1| DNA polymerase, archaeal type II, small subunit [Methanococcus
            maripaludis S2]
          Length = 585

 Score = 42.9 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 7/64 (10%), Positives = 20/64 (31%), Gaps = 7/64 (10%)

Query: 971  YKPILR---KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             + I+    +       +     + N + +A +V       T+ G ++  V   +    +
Sbjct: 203  LRKIIELKNQKKAYPLNQLFRRKKENEVFIAGIVSDVN--STKNGHKM--VELEDENGTF 258

Query: 1028 EANF 1031
                
Sbjct: 259  RVLL 262


>gi|326922202|ref|XP_003207340.1| PREDICTED: endonuclease/exonuclease/phosphatase family
           domain-containing protein 1-like, partial [Meleagris
           gallopavo]
          Length = 471

 Score = 42.9 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
           L +I+G+    A  I++   +  PF S+ED   
Sbjct: 52  LMSIRGITEKIANSIVDYRKEHGPFKSIEDLVR 84


>gi|224045591|ref|XP_002197268.1| PREDICTED: similar to Endonuclease/exonuclease/phosphatase family
           domain-containing protein 1 [Taeniopygia guttata]
          Length = 790

 Score = 42.9 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
           L +I+G+    A  I++   +  PF S+ED   
Sbjct: 370 LMSIRGITEKIANSIVDYRKEHGPFKSIEDLVR 402


>gi|118086197|ref|XP_418838.2| PREDICTED: similar to KIAA1706 protein [Gallus gallus]
          Length = 558

 Score = 42.9 bits (99), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCS 870
           L +I+G+    A  I++   +  PF S+ED   
Sbjct: 139 LMSIRGITEKIANSIVDYRKEHGPFKSIEDLVR 171


>gi|169824782|ref|YP_001692393.1| histidinol phosphatase/ hydrolase [Finegoldia magna ATCC 29328]
 gi|167831587|dbj|BAG08503.1| putative histidinol phosphatase and related hydrolases of the PHP
          family [Finegoldia magna ATCC 29328]
          Length = 249

 Score = 42.9 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 15 QVHSSYS-LLEGALSLNNILDKIAADQQPAIAITDTN---NLFSALE 57
           VHS YS    G  ++  I+ +  A +   I+ITD      ++    
Sbjct: 12 HVHSVYSRNNHGKSTIEEIVQEARAKKLKTISITDHGPGHMMYGIKR 58


>gi|127513417|ref|YP_001094614.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Shewanella loihica PV-4]
 gi|126638712|gb|ABO24355.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Shewanella loihica PV-4]
          Length = 99

 Score = 42.9 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883
           L  +KG+G   A  I+E   A   F+S+E+       K +  +V+E
Sbjct: 49  LTQLKGIGEAKASAIVEYRDAHGKFNSIEELTQ---VKGIGPKVIE 91


>gi|17230432|ref|NP_486980.1| hypothetical protein alr2940 [Nostoc sp. PCC 7120]
 gi|17132034|dbj|BAB74639.1| alr2940 [Nostoc sp. PCC 7120]
          Length = 228

 Score = 42.9 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +H+ YS  +G L  + ++++  A      AITD + +       + A A
Sbjct: 34 HMHTVYS--DGRLQPSVLMEQAIAIGLQGFAITDHHTVGG----YEAAQA 77


>gi|159905210|ref|YP_001548872.1| hypothetical protein MmarC6_0823 [Methanococcus maripaludis C6]
 gi|159886703|gb|ABX01640.1| PHP domain protein [Methanococcus maripaludis C6]
          Length = 239

 Score = 42.9 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ +S  +G L  + ++ +    +  A+ ITD 
Sbjct: 28 HTHTVFS--DGELIPSELVRRAIVLEHRALGITDH 60


>gi|134046575|ref|YP_001098060.1| hypothetical protein MmarC5_1549 [Methanococcus maripaludis C5]
 gi|132664200|gb|ABO35846.1| PHP C-terminal domain protein [Methanococcus maripaludis C5]
          Length = 239

 Score = 42.9 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ +S  +G L  + ++ +    +  A+ ITD 
Sbjct: 28 HTHTVFS--DGELIPSELVRRAIVLEHRALGITDH 60


>gi|146304464|ref|YP_001191780.1| phosphotransferase domain-containing protein [Metallosphaera
          sedula DSM 5348]
 gi|145702714|gb|ABP95856.1| PHP C-terminal domain protein [Metallosphaera sedula DSM 5348]
          Length = 220

 Score = 42.9 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
           VHS +S  +G      ++          IA+TD + 
Sbjct: 6  HVHSFFS--DGKHEPETLVKYAKKLNLV-IALTDHDT 39


>gi|76802131|ref|YP_327139.1| hypothetical protein NP2980A [Natronomonas pharaonis DSM 2160]
 gi|76557996|emb|CAI49581.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160]
          Length = 225

 Score = 42.9 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 12 VHLQVHSSYSLL-EGALSLNNILDKIAADQQPAIAITDTN 50
          V L  HS  SL  +G   +  +L++  A    A+A+TD +
Sbjct: 4  VELHAHS--SLSYDGRDPVELLLEQAEAVGLDALAVTDHD 41


>gi|301310229|ref|ZP_07216168.1| putative PHP domain protein [Bacteroides sp. 20_3]
 gi|300831803|gb|EFK62434.1| putative PHP domain protein [Bacteroides sp. 20_3]
          Length = 248

 Score = 42.9 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 14 LQVHSSYSLLEGA-LSLNNILDKIAADQQPAIAITDTNN 51
          L +H+  S      +S + I+ +  A    AIAITD N 
Sbjct: 8  LHIHTCLSPCGSLEMSPSEIVRRSLAKGLDAIAITDHNT 46


>gi|262381757|ref|ZP_06074895.1| metal-dependent phosphoesterase [Bacteroides sp. 2_1_33B]
 gi|262296934|gb|EEY84864.1| metal-dependent phosphoesterase [Bacteroides sp. 2_1_33B]
          Length = 248

 Score = 42.9 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 14 LQVHSSYSLLEGA-LSLNNILDKIAADQQPAIAITDTNN 51
          L +H+  S      +S + I+ +  A    AIAITD N 
Sbjct: 8  LHIHTCLSPCGSLEMSPSEIVRRSLAKGLDAIAITDHNT 46


>gi|15897650|ref|NP_342255.1| hypothetical protein SSO0750 [Sulfolobus solfataricus P2]
 gi|284174976|ref|ZP_06388945.1| hypothetical protein Ssol98_10011 [Sulfolobus solfataricus 98/2]
 gi|6015726|emb|CAB57553.1| hypothetical protein [Sulfolobus solfataricus P2]
 gi|13813917|gb|AAK41045.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261602419|gb|ACX92022.1| Protein of unknown function DUF655 [Sulfolobus solfataricus 98/2]
          Length = 208

 Score = 42.9 bits (99), Expect = 0.31,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 829 KVGDNRIYY-SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           K     +   +L  +  +G  T R I+E    KPF+S +D  SR+  K +   ++E ++ 
Sbjct: 112 KAEPLTLRLHALELLPNIGKKTLRIILEERKKKPFESFKDIESRIGVKDVASILVERIIK 171


>gi|242279949|ref|YP_002992078.1| hypothetical protein Desal_2483 [Desulfovibrio salexigens DSM
          2638]
 gi|242122843|gb|ACS80539.1| PHP domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 218

 Score = 42.9 bits (99), Expect = 0.32,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ +S  +G L    +  +       A+A+TD 
Sbjct: 5  HTHTVFS--DGELIPAELARRARVAGYRALAMTDH 37


>gi|330508533|ref|YP_004384961.1| hypothetical protein MCON_2753 [Methanosaeta concilii GP-6]
 gi|328929341|gb|AEB69143.1| Protein of unknown function (DUF655) [Methanosaeta concilii GP-6]
          Length = 193

 Score = 42.9 bits (99), Expect = 0.32,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 14/35 (40%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
           +L  + G+G      ++      PF S  D   RV
Sbjct: 124 ALELLPGIGKKLMWSVLNERKKGPFKSFADLVERV 158


>gi|188587414|ref|YP_001918959.1| PHP domain protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179352101|gb|ACB86371.1| PHP domain protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 352

 Score = 42.9 bits (99), Expect = 0.32,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +H+ YS  +G  ++  I +K        I I D 
Sbjct: 9  HIHTKYS--DGTSTIEEIAEKAKKRNLDFIIINDH 41


>gi|148242304|ref|YP_001227461.1| metal-dependent phosphoesterase [Synechococcus sp. RCC307]
 gi|147850614|emb|CAK28108.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Synechococcus sp. RCC307]
          Length = 218

 Score = 42.9 bits (99), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 15 QVHSSYSLL-EGALSLNNILDKIAADQQPAIAITDTNNLFS 54
            H   SL  +G+LS   I D+        +A+TD +++ +
Sbjct: 27 HCH---SLCSDGSLSPAQIADQAVEIGLEHMAVTDHHSVAA 64


>gi|302380207|ref|ZP_07268679.1| PHP domain protein [Finegoldia magna ACS-171-V-Col3]
 gi|302311990|gb|EFK93999.1| PHP domain protein [Finegoldia magna ACS-171-V-Col3]
          Length = 249

 Score = 42.9 bits (99), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 15 QVHSSYS-LLEGALSLNNILDKIAADQQPAIAITDTN---NLFSALE 57
           VHS YS    G  ++  I+ +  A +   I+ITD      ++    
Sbjct: 12 HVHSVYSRNNHGKSTIEEIVQEARAKKLKTISITDHGPGHMMYGIKR 58


>gi|120555913|ref|YP_960264.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Marinobacter aquaeolei VT8]
 gi|120325762|gb|ABM20077.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Marinobacter aquaeolei VT8]
          Length = 91

 Score = 42.9 bits (99), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLE 883
           LA++ GVG + A+ I++   A+ PF S+E      D K +  R +E
Sbjct: 40  LASLSGVGESKAQAIIDYREANGPFASIEAL---ADVKGIGARTVE 82


>gi|303234969|ref|ZP_07321593.1| PHP domain protein [Finegoldia magna BVS033A4]
 gi|302493824|gb|EFL53606.1| PHP domain protein [Finegoldia magna BVS033A4]
          Length = 249

 Score = 42.9 bits (99), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 15 QVHSSYS-LLEGALSLNNILDKIAADQQPAIAITDTN---NLFSALE 57
           VHS YS    G  ++  I+ +  A +   I+ITD      ++    
Sbjct: 12 HVHSVYSRNNHGKSTIEEIVQEARAKKLKTISITDHGPGHMMYGIKR 58


>gi|147920079|ref|YP_686162.1| metal-dependent phosphoesterase [uncultured methanogenic archaeon
           RC-I]
 gi|110621558|emb|CAJ36836.1| putative metal-dependent phosphoesterase (PHP family) [uncultured
           methanogenic archaeon RC-I]
          Length = 285

 Score = 42.9 bits (99), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 14/92 (15%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS------QKACAAGIQ 68
            VH+   L +G  +   ++   A      ++ITD +     ++         +A   G++
Sbjct: 6   HVHTC--LSDGLETPETVVSLAAESGIRLLSITDHDR----VKAYPSVISLGEAR--GVK 57

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
            I G ++    +      +         P  V
Sbjct: 58  VIPGVEMTTMDEPGFTCMHIVGLGIDICPEAV 89


>gi|119944819|ref|YP_942499.1| phosphotransferase domain-containing protein [Psychromonas
          ingrahamii 37]
 gi|119863423|gb|ABM02900.1| PHP C-terminal domain protein [Psychromonas ingrahamii 37]
          Length = 291

 Score = 42.9 bits (99), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ--PII 71
          L  H+  S  +G L+   ++ + A  Q   +AITD + +    E  Q      ++   I 
Sbjct: 5  LHSHTKAS--DGQLTPTELVVRAANRQVNILAITDHDTVDGLAEAKQTIIDNKLKLTLIN 62

Query: 72 GCQLD 76
          G +L 
Sbjct: 63 GIELT 67


>gi|269792732|ref|YP_003317636.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100367|gb|ACZ19354.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 235

 Score = 42.9 bits (99), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
           L ++ GVG  TA+ I++   A+ PF  ++D    +  K +  + LE + 
Sbjct: 183 LKSLPGVGDKTAQAIIDYRTANGPFRDVKDL---MKVKGIGPKKLEKMA 228


>gi|212634745|ref|YP_002311269.1| phosphoesterase PHP, N-terminal:PHP [Shewanella piezotolerans WP3]
 gi|212556229|gb|ACJ28683.1| Phosphoesterase PHP, N-terminal:PHP [Shewanella piezotolerans WP3]
          Length = 334

 Score = 42.9 bits (99), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
           L  H++ S  +G L+ + ++++  +      AITD +      E  Q
Sbjct: 58  LHSHTTAS--DGQLTPSELIERAISKGVQVFAITDHDTTDGLAEAHQ 102


>gi|319792453|ref|YP_004154093.1| hypothetical protein Varpa_1772 [Variovorax paradoxus EPS]
 gi|315594916|gb|ADU35982.1| hypothetical protein Varpa_1772 [Variovorax paradoxus EPS]
          Length = 106

 Score = 42.9 bits (99), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 17/43 (39%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRV 881
           L  + GVG   ++ I+EA     F    D   RV   K  +  
Sbjct: 31  LDGLNGVGPAMSKRILEARKQGEFKDWPDLMQRVKGVKEKKAQ 73


>gi|150007735|ref|YP_001302478.1| metal-dependent phosphoesterase [Parabacteroides distasonis ATCC
          8503]
 gi|255013560|ref|ZP_05285686.1| metal-dependent phosphoesterase [Bacteroides sp. 2_1_7]
 gi|256840001|ref|ZP_05545510.1| metal-dependent phosphoesterase [Parabacteroides sp. D13]
 gi|298375680|ref|ZP_06985637.1| PHP domain-containing protein [Bacteroides sp. 3_1_19]
 gi|149936159|gb|ABR42856.1| predicted metal-dependent phosphoesterase [Parabacteroides
          distasonis ATCC 8503]
 gi|256738931|gb|EEU52256.1| metal-dependent phosphoesterase [Parabacteroides sp. D13]
 gi|298268180|gb|EFI09836.1| PHP domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 248

 Score = 42.9 bits (99), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 14 LQVHSSYSLLEGA-LSLNNILDKIAADQQPAIAITDTNN 51
          L +H+  S      +S + I+ +  A    AIAITD N 
Sbjct: 8  LHIHTCLSPCGSLEMSPSEIVRRSLAKGLDAIAITDHNT 46


>gi|317153129|ref|YP_004121177.1| PHP domain-containing protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943380|gb|ADU62431.1| PHP domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 220

 Score = 42.9 bits (99), Expect = 0.34,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H+ +S  +G L    ++ +       AI +TD 
Sbjct: 4  LHTHTIFS--DGELIPAELVRRAEVIGYKAICMTDH 37


>gi|227830303|ref|YP_002832083.1| PHP domain protein [Sulfolobus islandicus L.S.2.15]
 gi|229579128|ref|YP_002837526.1| PHP domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|229582131|ref|YP_002840530.1| PHP domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|284997725|ref|YP_003419492.1| PHP C-terminal domain protein [Sulfolobus islandicus L.D.8.5]
 gi|227456751|gb|ACP35438.1| PHP domain protein [Sulfolobus islandicus L.S.2.15]
 gi|228009842|gb|ACP45604.1| PHP domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|228012847|gb|ACP48608.1| PHP domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|284445620|gb|ADB87122.1| PHP C-terminal domain protein [Sulfolobus islandicus L.D.8.5]
          Length = 219

 Score = 42.9 bits (99), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 25/99 (25%)

Query: 14  LQVHSSYSLLEGALS--LNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI---- 67
           L VHS YS  +G       +I+    A     +AITD +             + G+    
Sbjct: 5   LHVHSRYS--DG--KYFPKDIIAYARARNI-YVAITDHDT------------SLGLNSVK 47

Query: 68  --QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS 104
             + I+G ++  +    + + N   +P   +  +V    
Sbjct: 48  EEKVILGQEVTTEYGHVVILCNFPPSPPNRIAELVDYAK 86


>gi|323474721|gb|ADX85327.1| conserved hypothetical protein [Sulfolobus islandicus REY15A]
          Length = 197

 Score = 42.5 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           +L  +  +G  T R I+E    KPF+S +D  +R+  K L   ++E ++ 
Sbjct: 111 ALELLPNIGKKTLRIILEERKKKPFESFKDIETRIGIKDLASILVERIIK 160


>gi|227827663|ref|YP_002829443.1| hypothetical protein M1425_1392 [Sulfolobus islandicus M.14.25]
 gi|229584867|ref|YP_002843369.1| hypothetical protein M1627_1442 [Sulfolobus islandicus M.16.27]
 gi|238619834|ref|YP_002914660.1| Protein of unknown function DUF655 [Sulfolobus islandicus M.16.4]
 gi|227459459|gb|ACP38145.1| Protein of unknown function DUF655 [Sulfolobus islandicus M.14.25]
 gi|228019917|gb|ACP55324.1| Protein of unknown function DUF655 [Sulfolobus islandicus M.16.27]
 gi|238380904|gb|ACR41992.1| Protein of unknown function DUF655 [Sulfolobus islandicus M.16.4]
          Length = 208

 Score = 42.5 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           +L  +  +G  T R I+E    KPF+S +D  +R+  K +   ++E ++ 
Sbjct: 122 ALELLPNIGKKTLRIILEERKKKPFESFKDIETRIGIKDVASILVERIIK 171


>gi|154413577|ref|XP_001579818.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121914029|gb|EAY18832.1| hypothetical protein TVAG_294830 [Trichomonas vaginalis G3]
          Length = 590

 Score = 42.5 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSK---QQKKTRKGSRIGW--VTFSEPAKEYEANFF 1032
            +      +  + + G  + + +++      Q  KT+ GS I    +T S+     E   +
Sbjct: 280  LKFTKISD-CSKMTGKTVDIISIITFIGDCQTIKTKSGSSIEKRNITVSDETGTIEVTLW 338


>gi|237737445|ref|ZP_04567926.1| histidinol phosphate phosphatase [Fusobacterium mortiferum ATCC
          9817]
 gi|229421307|gb|EEO36354.1| histidinol phosphate phosphatase [Fusobacterium mortiferum ATCC
          9817]
          Length = 271

 Score = 42.5 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +HS +S  + +  L  I +K  +     IAITD 
Sbjct: 10 HIHSEFS-GDSSQDLVEIFEKAISLGLEEIAITDH 43


>gi|149706121|ref|XP_001501241.1| PREDICTED: similar to endonuclease/exonuclease/phosphatase family
           domain containing 1 [Equus caballus]
          Length = 569

 Score = 42.5 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 147 LMSVRGLTEKMAASIVDYRREHGPFRSVEDLVR 179


>gi|116750328|ref|YP_847015.1| group 1 glycosyl transferase [Syntrophobacter fumaroxidans MPOB]
 gi|116699392|gb|ABK18580.1| glycosyl transferase, group 1 [Syntrophobacter fumaroxidans MPOB]
          Length = 827

 Score = 42.5 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 12/56 (21%)

Query: 14 LQVHSSYSLL------------EGALSLNNILDKIAADQQPAIAITDTNNLFSALE 57
          L +HS +S+             E       +           + ITD N +   LE
Sbjct: 15 LHLHSKFSIRPSQWVLQKIGCPESFADPAELYGLARRKGMSLVTITDHNTIAGCLE 70


>gi|169841567|ref|ZP_02874680.1| dnaE [candidate division TM7 single-cell isolate TM7a]
          Length = 70

 Score = 42.5 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 47/67 (70%)

Query: 612 LTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKI 671
                T G+FQLES+GM++ L  ++P+  EDIIA+V+LYRPGP+  I  +  RK+G+E I
Sbjct: 1   FQRGDTTGVFQLESAGMKRYLRELKPEVFEDIIAMVALYRPGPMQFIDSFIKRKHGEEDI 60

Query: 672 VSIHPLI 678
           + +HP +
Sbjct: 61  IYLHPGM 67


>gi|307545461|ref|YP_003897940.1| competence protein ComEA [Halomonas elongata DSM 2581]
 gi|307217485|emb|CBV42755.1| K02237 competence protein ComEA [Halomonas elongata DSM 2581]
          Length = 110

 Score = 42.5 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
           LA + G+G   A  I+E   A+ PF++ +D       K +    +E+L 
Sbjct: 60  LAELPGIGDVKATAIVEERDANGPFENADDLTR---VKGIGSATVEALA 105


>gi|227830360|ref|YP_002832140.1| Protein of unknown function DUF655 [Sulfolobus islandicus L.S.2.15]
 gi|284997866|ref|YP_003419633.1| hypothetical protein LD85_1597 [Sulfolobus islandicus L.D.8.5]
 gi|227456808|gb|ACP35495.1| Protein of unknown function DUF655 [Sulfolobus islandicus L.S.2.15]
 gi|284445761|gb|ADB87263.1| hypothetical protein LD85_1597 [Sulfolobus islandicus L.D.8.5]
          Length = 208

 Score = 42.5 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           +L  +  +G  T R I+E    KPF+S +D  +R+  K +   ++E ++ 
Sbjct: 122 ALELLPNIGKKTLRIILEERKKKPFESFKDIETRIGIKDVASILVERIIK 171


>gi|119493968|ref|ZP_01624528.1| hypothetical protein L8106_04136 [Lyngbya sp. PCC 8106]
 gi|119452289|gb|EAW33485.1| hypothetical protein L8106_04136 [Lyngbya sp. PCC 8106]
          Length = 253

 Score = 42.5 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
           +H+  S  +G L  N ++++  A     +AITD +          +A 
Sbjct: 57 HMHTVKS--DGQLKPNQLIEQAIAIGLKGLAITDHHTTQG----YTEAQ 99


>gi|23098430|ref|NP_691896.1| hypothetical protein OB0975 [Oceanobacillus iheyensis HTE831]
 gi|22776656|dbj|BAC12931.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 268

 Score = 42.5 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 13/102 (12%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L VHS YS  +G+ +++ ++ +   +    ++  D + + + L+  Q+A    I  I G 
Sbjct: 5   LHVHSHYS--DGSDAVSKVMKQAKKNGVTHLSFVDHDTVDNLLDIQQQAIHFDIDVIPGI 62

Query: 74  QLD-IDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIE 114
           ++   D +   K+   G    P    I          + + +
Sbjct: 63  EISAYDFKRKRKVHVLGYNYKPEANHI----------RNICK 94


>gi|296135591|ref|YP_003642833.1| RND efflux system, outer membrane lipoprotein, NodT family [Thiomonas
            intermedia K12]
 gi|295795713|gb|ADG30503.1| RND efflux system, outer membrane lipoprotein, NodT family [Thiomonas
            intermedia K12]
          Length = 526

 Score = 42.5 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 41/142 (28%), Gaps = 21/142 (14%)

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL--------E 941
            A D  G +R  L    + +    +W      +   ++      T   +  L        +
Sbjct: 172  AFDLSGGNRRAL----EALAAQTEWRRYQLDSAQLSLAGAVVATAVKQALLAAQIDALQK 227

Query: 942  KFSVENSSVRFENEQRVLGF-YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
              + +   +     +  LG    S   +   +  + +           +       LA  
Sbjct: 228  MLAAQQEQLEITRARERLGVATASD--IATLQTQMEQTRA-SIAPLRNSADQAAHLLA-- 282

Query: 1001 VVSKQQKKTRKGSRIGWVTFSE 1022
            V+S Q+  T K  R    T  +
Sbjct: 283  VLSGQEPGTAKNPRF---TLDD 301


>gi|303244271|ref|ZP_07330608.1| Protein of unknown function DUF655 [Methanothermococcus okinawensis
           IH1]
 gi|302485398|gb|EFL48325.1| Protein of unknown function DUF655 [Methanothermococcus okinawensis
           IH1]
          Length = 194

 Score = 42.5 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK---KLNRRVLESL 885
           SL  + G+G TT   I+E    KPF+S ED   RV       +++R+ E L
Sbjct: 127 SLQLLPGIGKTTMWKIIEEREAKPFESFEDVEKRVHRNLLDAISKRIEEEL 177


>gi|168483024|ref|ZP_02707976.1| competence protein CelA [Streptococcus pneumoniae CDC1873-00]
 gi|172043553|gb|EDT51599.1| competence protein CelA [Streptococcus pneumoniae CDC1873-00]
          Length = 216

 Score = 42.5 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   A+  F S+++         +  + +E L
Sbjct: 165 LKQVKGLGGKRAQDIIDYREANGKFKSVDELKK---VSGIGAKTIEKL 209


>gi|294623387|ref|ZP_06702245.1| hypothetical protein EfmU0317_2645 [Enterococcus faecium U0317]
 gi|291597208|gb|EFF28401.1| hypothetical protein EfmU0317_2645 [Enterococcus faecium U0317]
          Length = 331

 Score = 42.5 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
          + L  H+ +S  +G  S++ ++     +    + +TD N   
Sbjct: 6  IELHAHTCHS--DGDFSIHQLIQAAKEEPYQVLTVTDHNTFA 45


>gi|304316574|ref|YP_003851719.1| PHP domain protein [Thermoanaerobacterium thermosaccharolyticum
          DSM 571]
 gi|302778076|gb|ADL68635.1| PHP domain protein [Thermoanaerobacterium thermosaccharolyticum
          DSM 571]
          Length = 231

 Score = 42.5 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 7/66 (10%)

Query: 14 LQVHSSYSLL-EGALSLNNILDKIAADQQPAIAITDTNNLFSA--LE-FSQKACAAGIQP 69
          L +HS+ S   +  ++ NNI++         I+ITD N+   A  +E   + + + GI+ 
Sbjct: 7  LHIHSALSPCADNEMTPNNIVNMAVLKGLDVISITDHNS---AKNVEVIYELSKSKGIKL 63

Query: 70 IIGCQL 75
          I G ++
Sbjct: 64 IPGIEV 69


>gi|323477449|gb|ADX82687.1| Protein of unknown function DUF655 [Sulfolobus islandicus HVE10/4]
          Length = 197

 Score = 42.5 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           +L  +  +G  T R I+E    KPF+S +D  +R+  K +   ++E ++ 
Sbjct: 111 ALELLPNIGKKTLRIILEERKKKPFESFKDIETRIGIKDVASILVERIIK 160


>gi|253580188|ref|ZP_04857455.1| phosphotransferase domain-containing protein [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848707|gb|EES76670.1| phosphotransferase domain-containing protein [Ruminococcus sp.
           5_1_39BFAA]
          Length = 240

 Score = 42.5 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 65/246 (26%), Gaps = 94/246 (38%)

Query: 14  LQVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTN-NLFS-ALEFS------- 59
           L  H+     +Y       SL  +    +      + IT+   ++     +F        
Sbjct: 9   LHTHTVASGHAY------CSLREMAKAASEKGLEVLGITEHAPSMPGTCHKFYFNNLKVV 62

Query: 60  -QKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV-------------ST 105
            ++    GIQ ++G +++I          Q           V++                
Sbjct: 63  PREM--YGIQLLLGSEVNILDAQGTVDLGQRTLSSMD----VVIASLHTPCMKPASKLEN 116

Query: 106 AEGYQRLIE-----LVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFF 160
            E Y  +++     ++   +  D   +   I    L +   E          G +     
Sbjct: 117 TEAYLNVMKNPYVNII--GHPDDGRYE---IDYEALVQGAKE---------YGKV----- 157

Query: 161 FNSSQVAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQ-------LAYTHELPLVA 213
                                  + L  H           V+       L   +++P+V 
Sbjct: 158 -----------------------LELNNHSMDPECTRENAVENDTVMLNLCKKYQVPVVM 194

Query: 214 TNNSLF 219
            +++ F
Sbjct: 195 DSDAHF 200


>gi|134095737|ref|YP_001100812.1| hypothetical protein HEAR2569 [Herminiimonas arsenicoxydans]
 gi|133739640|emb|CAL62691.1| Conserved hypothetical protein, putative DNA-binding [Herminiimonas
           arsenicoxydans]
          Length = 121

 Score = 42.5 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L  IKG+G TT++ I+E       F    D  +RV  K +  +  E    AG
Sbjct: 32  ALDGIKGIGPTTSKAILEERKKGGNFKDWNDLQTRV--KGVGDKSSEKFSQAG 82


>gi|124026775|ref|YP_001015890.1| lysyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
 gi|123961843|gb|ABM76626.1| Lysyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A]
          Length = 513

 Score = 42.5 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 6/51 (11%), Positives = 17/51 (33%), Gaps = 6/51 (11%)

Query: 982  GYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             Y++          + +A  V S++        ++ + T S+     +   
Sbjct: 46   KYKDLPNGEEKKDEVSIAGRVTSRRVMG-----KLAFFTLSDETGIIQLFL 91


>gi|72383033|ref|YP_292388.1| lysyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A]
 gi|72002883|gb|AAZ58685.1| lysyl-tRNA synthetase, class-2 [Prochlorococcus marinus str. NATL2A]
          Length = 513

 Score = 42.5 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 6/51 (11%), Positives = 17/51 (33%), Gaps = 6/51 (11%)

Query: 982  GYEESVATIRGN-NIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             Y++          + +A  V S++        ++ + T S+     +   
Sbjct: 46   KYKDLPNGEEKKDEVSIAGRVTSRRVMG-----KLAFFTLSDETGIIQLFL 91


>gi|292656355|ref|YP_003536252.1| PHP domain-containing protein [Haloferax volcanii DS2]
 gi|291372415|gb|ADE04642.1| PHP domain protein [Haloferax volcanii DS2]
          Length = 289

 Score = 42.5 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 13/105 (12%), Positives = 29/105 (27%), Gaps = 35/105 (33%)

Query: 15  QVHSS--YSLLEGALSLNNIL-DKIAADQQPAIAITDTNN------------LFSALEFS 59
            VHS   Y   +       ++ ++ A     A+ +TD +             ++  +   
Sbjct: 11  HVHSEGSYDAHDSV----ELILEQAAEIGLDAVVVTDHDVIDESLRAAQLAPMYGLV--- 63

Query: 60  QKACAAGIQPIIGCQLDIDMQD----NLKMTNQGKTPFPTVPSIV 100
                 GI    G ++           ++     + P       V
Sbjct: 64  ------GIP---GVEVSTADGHLLALGVEELPPRRRPLDETARWV 99


>gi|327400293|ref|YP_004341132.1| hypothetical protein Arcve_0384 [Archaeoglobus veneficus SNP6]
 gi|327315801|gb|AEA46417.1| protein of unknown function DUF655 [Archaeoglobus veneficus SNP6]
          Length = 192

 Score = 42.5 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
           L  + G+G  T   I++    +PF S +D  SRV  K L R   E L+
Sbjct: 129 LELLPGIGKKTMWAILDERKKEPFKSFDDIASRV--KGLQRP--EKLI 172


>gi|20095094|ref|NP_614941.1| RNA-binding protein [Methanopyrus kandleri AV19]
 gi|19888382|gb|AAM02871.1| Predicted RNA-binding protein [Methanopyrus kandleri AV19]
          Length = 204

 Score = 42.5 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
           L  + G+G  T   I+E    +PF+SL+D   RV   +++ R +
Sbjct: 130 LELLPGIGRKTLERILEEREKEPFESLDDIKERVKGLRMHPRDM 173


>gi|16331686|ref|NP_442414.1| hypothetical protein sll0549 [Synechocystis sp. PCC 6803]
 gi|1001243|dbj|BAA10484.1| sll0549 [Synechocystis sp. PCC 6803]
          Length = 249

 Score = 42.5 bits (98), Expect = 0.40,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 6  EKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
             P F +  +H+  S  +G ++   ++++    +   +AITD + +      
Sbjct: 48 TSCPRFYNFHLHTRCS--DGQMTPEGLIEQAIHQELQGLAITDHHCVAGYYRA 98


>gi|168185765|ref|ZP_02620400.1| putative DNA polymerase beta [Clostridium botulinum C str.
          Eklund]
 gi|169296182|gb|EDS78315.1| putative DNA polymerase beta [Clostridium botulinum C str.
          Eklund]
          Length = 249

 Score = 42.5 bits (98), Expect = 0.40,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
            H+ +S   G  ++   ++     +   IAITD  
Sbjct: 8  HTHTKFS--HGVGTIEENVEFAIRKKLKTIAITDHG 41


>gi|193222378|emb|CAL62495.2| Putative DNA polymerase X [Herminiimonas arsenicoxydans]
          Length = 576

 Score = 42.5 bits (98), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 19/96 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN----LFSA-----------LEF 58
           L  H+  S  +G  SL  +  +        +AITD ++                   ++ 
Sbjct: 342 LHAHTKAS--DGQHSLREMAMEAKNRGLSYLAITDHSSSLTITHGLDAQGLIKQMNEIDA 399

Query: 59  SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFP 94
                   I+ + GC+++I+    L + +       
Sbjct: 400 LNA--ELDIKILKGCEVEINEDGTLDLPDDILERLD 433


>gi|134095542|ref|YP_001100617.1| putative DNA polymerase [Herminiimonas arsenicoxydans]
          Length = 528

 Score = 42.5 bits (98), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 19/96 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN----LFSA-----------LEF 58
           L  H+  S  +G  SL  +  +        +AITD ++                   ++ 
Sbjct: 294 LHAHTKAS--DGQHSLREMAMEAKNRGLSYLAITDHSSSLTITHGLDAQGLIKQMNEIDA 351

Query: 59  SQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFP 94
                   I+ + GC+++I+    L + +       
Sbjct: 352 LNA--ELDIKILKGCEVEINEDGTLDLPDDILERLD 385


>gi|229579178|ref|YP_002837576.1| Protein of unknown function DUF655 [Sulfolobus islandicus
           Y.G.57.14]
 gi|229582070|ref|YP_002840469.1| Protein of unknown function DUF655 [Sulfolobus islandicus
           Y.N.15.51]
 gi|228009892|gb|ACP45654.1| Protein of unknown function DUF655 [Sulfolobus islandicus
           Y.G.57.14]
 gi|228012786|gb|ACP48547.1| Protein of unknown function DUF655 [Sulfolobus islandicus
           Y.N.15.51]
          Length = 197

 Score = 42.5 bits (98), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           +L  +  +G  T R I+E    KPF+S +D  +R+  K +   ++E ++ 
Sbjct: 111 ALELLPNIGKKTLRIILEERKKKPFESFKDIETRIGIKDVASILVERIIK 160


>gi|123187370|gb|ABM69262.1| unknown [Aeromonas hydrophila]
          Length = 106

 Score = 42.5 bits (98), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLES 884
           L A+KG+G   A+ I++       F ++E      D   +    LE+
Sbjct: 55  LTALKGIGEKKAQAIVDFREKQGKFTTVEQL---ADVSGIGPATLEA 98


>gi|145297875|ref|YP_001140716.1| ComEA protein [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142850647|gb|ABO88968.1| ComEA protein [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 106

 Score = 42.5 bits (98), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLES 884
           L A+KG+G   A+ I++       F ++E      D   +    LE+
Sbjct: 55  LTALKGIGEKKAQAIVDFRQKQGKFTTVEQL---ADVSGIGPATLEA 98


>gi|309800209|ref|ZP_07694391.1| competence protein CelA [Streptococcus infantis SK1302]
 gi|308116167|gb|EFO53661.1| competence protein CelA [Streptococcus infantis SK1302]
          Length = 213

 Score = 42.5 bits (98), Expect = 0.41,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   ++  F S+++         +  + LE L
Sbjct: 162 LKQVKGLGAKRAQDIIDHRDSNGKFKSVDELKK---VSGIGAKTLEKL 206


>gi|170759893|ref|YP_001788930.1| putative phosphoesterase [Clostridium botulinum A3 str. Loch
          Maree]
 gi|169406882|gb|ACA55293.1| PHP domain protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 225

 Score = 42.5 bits (98), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 15 QVH-SSYSLLEGALSLNNILDKIAADQQPAIAITDTNN---LFSALEFSQKACAAGIQPI 70
           +H S YS L+  +SL  I+ +        + ITD  +   +    E    + A G   +
Sbjct: 6  HIHESKYS-LDSEISLEEIVKRGNEIGLDGVCITDHESSDIM---DEAHAYSKATGFLIL 61

Query: 71 IGCQL 75
          +G ++
Sbjct: 62 VGAEI 66


>gi|91228666|ref|ZP_01262581.1| putative metal-dependent phosphoesterase YciV [Vibrio
          alginolyticus 12G01]
 gi|91187787|gb|EAS74104.1| putative metal-dependent phosphoesterase YciV [Vibrio
          alginolyticus 12G01]
          Length = 285

 Score = 42.5 bits (98), Expect = 0.41,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L  H++ S  +G L   +++++  +     +AITD + +
Sbjct: 5  LHSHTTAS--DGRLEPKDLVERALSFDIEVLAITDHDTV 41


>gi|33862998|ref|NP_894558.1| hypothetical protein PMT0726 [Prochlorococcus marinus str. MIT
          9313]
 gi|33634915|emb|CAE20901.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
          9313]
          Length = 218

 Score = 42.5 bits (98), Expect = 0.41,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
            H+  S  +G+L    ++ + +      IAITD ++
Sbjct: 27 HCHTICS--DGSLEPELLIAQASQRGLQHIAITDHHS 61


>gi|269967047|ref|ZP_06181115.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269828306|gb|EEZ82572.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 285

 Score = 42.5 bits (98), Expect = 0.42,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L  H++ S  +G L   +++++  +     +AITD + +
Sbjct: 5  LHSHTTAS--DGRLEPKDLVERALSFDIEVLAITDHDTV 41


>gi|206895105|ref|YP_002246645.1| ATP-dependent DNA helicase RecG [Coprothermobacter proteolyticus DSM
            5265]
 gi|206737722|gb|ACI16800.1| ATP-dependent DNA helicase RecG [Coprothermobacter proteolyticus DSM
            5265]
          Length = 793

 Score = 42.5 bits (98), Expect = 0.42,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 20/51 (39%)

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +      G +  +   VV  + +KT +G R+  VT  +     +  FF
Sbjct: 151  KILKVKQLRTGIDATVLGTVVDVKLQKTYRGYRLLTVTLQDDTGRVDLVFF 201


>gi|295133062|ref|YP_003583738.1| ATP-dependent DNA helicase [Zunongwangia profunda SM-A87]
 gi|294981077|gb|ADF51542.1| ATP-dependent DNA helicase [Zunongwangia profunda SM-A87]
          Length = 168

 Score = 42.5 bits (98), Expect = 0.42,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 20/60 (33%), Gaps = 7/60 (11%)

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIG--WVTFSEPAKEYEANFF 1032
            L K       E         +++   +   +  + ++G R+   +V   +     E  +F
Sbjct: 45   LDKTRFYKIAELQ--RNSAEVQVVGKITHIKTVEQKRGKRLVADFV---DETGRMELVWF 99


>gi|328952581|ref|YP_004369915.1| PHP domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452905|gb|AEB08734.1| PHP domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 220

 Score = 42.5 bits (98), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 22/77 (28%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS----------QKAC 63
          L  HS YS  +G L     + ++       + ITD       ++ S          + A 
Sbjct: 4  LHTHSLYS--DGELLPAEAVRRVTVLGYRYLGITDH------VDASNFDFVIERLRRAAI 55

Query: 64 AAG----IQPIIGCQLD 76
                  + I G +  
Sbjct: 56 ELNRVNQTKLIPGVEFT 72


>gi|309781052|ref|ZP_07675790.1| competence protein ComE [Ralstonia sp. 5_7_47FAA]
 gi|308920118|gb|EFP65777.1| competence protein ComE [Ralstonia sp. 5_7_47FAA]
          Length = 104

 Score = 42.5 bits (98), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            L  + G+G   ++ I+E    + P+    DF +RV    +  + L  L
Sbjct: 32  GLETLSGIGPKRSKLIIEERTKNGPYKDAADFKARV--SGIGDKTLVKL 78


>gi|241662470|ref|YP_002980830.1| ComEA-like signal peptide protein [Ralstonia pickettii 12D]
 gi|240864497|gb|ACS62158.1| putative ComEA-related signal peptide protein [Ralstonia pickettii
           12D]
          Length = 104

 Score = 42.5 bits (98), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
            L  + G+G   ++ I+E    + P+    DF +RV    +  + L  L
Sbjct: 32  GLETLSGIGPKRSKLIIEERTKNGPYKDAADFKARV--SGIGDKTLVKL 78


>gi|94985709|ref|YP_605073.1| PHP-like protein [Deinococcus geothermalis DSM 11300]
 gi|94555990|gb|ABF45904.1| DNA polymerase of the X family containing C terminal PHP hydrolase
           domain [Deinococcus geothermalis DSM 11300]
          Length = 572

 Score = 42.5 bits (98), Expect = 0.43,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 31/128 (24%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPA----IAIT-DT-------NNLF-----SAL 56
           L  HS +S  +GA +L  +++  A    PA    +  T D        N +      + +
Sbjct: 333 LHTHSVWS--DGAATLLEMVETAARLGSPAGGTYLG-TGDHSRAAHYANGMSIERLRAYV 389

Query: 57  EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTV-----PSIVLLVSTAEGYQ- 110
              ++   +G+  + G ++DI    +L   ++       V         L      G Q 
Sbjct: 390 REIRELQRSGLPLLAGAEVDILEDGSLDYPDEELLSLDYVVASVHSHFTL----DAGRQT 445

Query: 111 -RLIELVS 117
            RL+  VS
Sbjct: 446 ERLVRAVS 453


>gi|153004145|ref|YP_001378470.1| phosphotransferase domain-containing protein [Anaeromyxobacter
          sp. Fw109-5]
 gi|152027718|gb|ABS25486.1| PHP domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 279

 Score = 42.5 bits (98), Expect = 0.44,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 13/91 (14%)

Query: 14 LQVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
          L  HS      Y     A     + ++ AA       + D + +       Q A   G++
Sbjct: 12 LHSHSLASDGEY-----AA--GEVAERAAAAGLRVWGLCDHDTVAGLTAAQQAADRVGLR 64

Query: 69 PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSI 99
           + G +L     D  ++   G    P  P +
Sbjct: 65 FVPGIELS-AFLDRREIHLLGHFVDPEHPGL 94


>gi|161830379|ref|YP_001596420.1| DNA-binding/PHP domain-containing protein [Coxiella burnetii RSA
           331]
 gi|164686005|ref|ZP_01947535.2| PHP domain protein [Coxiella burnetii 'MSU Goat Q177']
 gi|161762246|gb|ABX77888.1| putative DNA-binding/PHP domain protein [Coxiella burnetii RSA 331]
 gi|164601535|gb|EAX31846.2| PHP domain protein [Coxiella burnetii 'MSU Goat Q177']
          Length = 578

 Score = 42.5 bits (98), Expect = 0.44,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 12/41 (29%)

Query: 14  LQVHSS-----YSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H++     YSL         + +         +AITD 
Sbjct: 347 LHCHTNATDGKYSL-------EAMAEAAQTRGYRYMAITDH 380


>gi|297588762|ref|ZP_06947405.1| histidinol phosphatase/ hydrolase [Finegoldia magna ATCC 53516]
 gi|297574135|gb|EFH92856.1| histidinol phosphatase/ hydrolase [Finegoldia magna ATCC 53516]
          Length = 249

 Score = 42.5 bits (98), Expect = 0.44,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 15 QVHSSYS-LLEGALSLNNILDKIAADQQPAIAITDTN---NLFSALE 57
           VHS YS    G  ++  I+ +  + +   I+ITD      ++    
Sbjct: 12 HVHSVYSRNNHGKSTIEEIVQEARSKKLKTISITDHGPGHIMYGIKR 58


>gi|328951369|ref|YP_004368704.1| PHP domain protein [Marinithermus hydrothermalis DSM 14884]
 gi|328451693|gb|AEB12594.1| PHP domain protein [Marinithermus hydrothermalis DSM 14884]
          Length = 536

 Score = 42.5 bits (98), Expect = 0.44,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             H++YS  +GA SL  + +   A     + ++D 
Sbjct: 306 HAHTTYS--DGAASLREMAEAARARGYRYLVVSDH 338


>gi|186682939|ref|YP_001866135.1| phospholipase D/transphosphatidylase [Nostoc punctiforme PCC 73102]
 gi|186465391|gb|ACC81192.1| phospholipase D/Transphosphatidylase [Nostoc punctiforme PCC 73102]
          Length = 186

 Score = 42.5 bits (98), Expect = 0.44,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
           L  + GVG   A+ I+ +   + F SL+D   RV    +  + LE
Sbjct: 137 LETLPGVGKKLAQRIILSRQQQKFTSLQDL-ERVP--GVKAKTLE 178


>gi|304313837|ref|YP_003848984.1| phosphoesterase [Methanothermobacter marburgensis str. Marburg]
 gi|302587296|gb|ADL57671.1| predicted phosphoesterase [Methanothermobacter marburgensis str.
          Marburg]
          Length = 220

 Score = 42.5 bits (98), Expect = 0.45,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           +H+ YS  +   +  ++L + +     A+AI D N +
Sbjct: 7  HIHTVYS-GDARGTPRDVLKRASLVGLDAVAIADHNTM 43


>gi|227548751|ref|ZP_03978800.1| possible competence protein EA [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079163|gb|EEI17126.1| possible competence protein EA [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 214

 Score = 42.5 bits (98), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  + GVG  TA  I+    A+ PF S+E     +D K +     E+L
Sbjct: 164 LTTLPGVGDATAAAIIAHREANGPFASVEQL---MDVKGIGPAKFEAL 208


>gi|189345929|ref|YP_001942458.1| ATP-dependent DNA helicase RecG [Chlorobium limicola DSM 245]
 gi|189340076|gb|ACD89479.1| ATP-dependent DNA helicase RecG [Chlorobium limicola DSM 245]
          Length = 706

 Score = 42.5 bits (98), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW-VTFSEPAKEYEAN 1030
            +  L +  I+   E  A   G  + +   V+  + + T+ G R+ + V  ++     E  
Sbjct: 38   RRYLDRRTIRRIGELRA---GEAVTVVGTVLQARLEGTQPG-RMRFKVVLADGTGSIELT 93

Query: 1031 FF 1032
            +F
Sbjct: 94   WF 95


>gi|297619967|ref|YP_003708072.1| Protein of unknown function DUF655 [Methanococcus voltae A3]
 gi|297378944|gb|ADI37099.1| Protein of unknown function DUF655 [Methanococcus voltae A3]
          Length = 197

 Score = 42.5 bits (98), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 845 VGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
           +G T    I+E    KPF+S +DF  RV    +
Sbjct: 135 IGKTAMWKIIEEREKKPFESFDDFEKRVHKHNI 167


>gi|312137229|ref|YP_004004566.1| hypothetical protein Mfer_1009 [Methanothermus fervidus DSM 2088]
 gi|311224948|gb|ADP77804.1| Protein of unknown function DUF655 [Methanothermus fervidus DSM
           2088]
          Length = 201

 Score = 42.1 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS-----KKLNRRVL 882
           L  + G+G      I++A   +PF S ED   RV S     K L +R+L
Sbjct: 118 LELLPGIGKKYMWEIIKAREKEPFKSFEDIKKRVPSLSDPVKILVKRIL 166


>gi|149019544|ref|ZP_01834863.1| competence protein CelA [Streptococcus pneumoniae SP23-BS72]
 gi|147930919|gb|EDK81899.1| competence protein CelA [Streptococcus pneumoniae SP23-BS72]
          Length = 216

 Score = 42.1 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++    +  F S+++  +      +  + +E L
Sbjct: 165 LKQVKGLGGKRAQDIIDHRETNGKFKSVDELKT---VSGIGAKTIEKL 209


>gi|254230517|ref|ZP_04923889.1| PHP domain containing protein [Vibrio sp. Ex25]
 gi|151936965|gb|EDN55851.1| PHP domain containing protein [Vibrio sp. Ex25]
          Length = 285

 Score = 42.1 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L  H++ S  +G L   +++++  +     +AITD + +
Sbjct: 5  LHSHTTAS--DGRLEPKDLVERALSFDIEVLAITDHDTV 41


>gi|313900709|ref|ZP_07834202.1| PHP domain protein [Clostridium sp. HGF2]
 gi|312954771|gb|EFR36446.1| PHP domain protein [Clostridium sp. HGF2]
          Length = 294

 Score = 42.1 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 1/84 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS YS  +G  +   ++          IA++D N      +  +   A GI+ I   
Sbjct: 6  LHMHSCYS-NDGEFTPQELIHMADEAHLTTIALSDHNTPKGIADMVRLGEAKGIRVIPAM 64

Query: 74 QLDIDMQDNLKMTNQGKTPFPTVP 97
          + D   ++           +    
Sbjct: 65 EFDTLFEELEVHVLGYGIDYEQPY 88


>gi|209364119|ref|YP_001424924.2| DNA Polymerase X family [Coxiella burnetii Dugway 5J108-111]
 gi|212218905|ref|YP_002305692.1| DNA Polymerase X family [Coxiella burnetii CbuK_Q154]
 gi|215918974|ref|NP_819524.2| DNA polymerase X family/PHP domain-containing protein [Coxiella
           burnetii RSA 493]
 gi|206583859|gb|AAO90038.2| DNA Polymerase X family [Coxiella burnetii RSA 493]
 gi|207082052|gb|ABS78173.2| DNA Polymerase X family [Coxiella burnetii Dugway 5J108-111]
 gi|212013167|gb|ACJ20547.1| DNA Polymerase X family [Coxiella burnetii CbuK_Q154]
          Length = 594

 Score = 42.1 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 12/41 (29%)

Query: 14  LQVHSS-----YSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H++     YSL         + +         +AITD 
Sbjct: 363 LHCHTNATDGKYSL-------EAMAEAAQTRGYRYMAITDH 396


>gi|116070560|ref|ZP_01467829.1| Phosphoesterase PHP-like protein [Synechococcus sp. BL107]
 gi|116065965|gb|EAU71722.1| Phosphoesterase PHP-like protein [Synechococcus sp. BL107]
          Length = 215

 Score = 42.1 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
            H+  S  +G+L    ++ +        +A+TD ++
Sbjct: 24 HCHTVCS--DGSLEPIELIQQATTLGLSHLAVTDHHS 58


>gi|325968730|ref|YP_004244922.1| nucleotide binding protein [Vulcanisaeta moutnovskia 768-28]
 gi|323707933|gb|ADY01420.1| putative nucleotide binding protein [Vulcanisaeta moutnovskia
           768-28]
          Length = 190

 Score = 42.1 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
           SL  +KG+G  T   I+E    KPF S ED  SR+          E L+
Sbjct: 129 SLELLKGIGKKTLWQILEERRKKPFQSFEDIKSRIGIDP------EKLI 171


>gi|289582043|ref|YP_003480509.1| PHP domain protein [Natrialba magadii ATCC 43099]
 gi|289531596|gb|ADD05947.1| PHP domain protein [Natrialba magadii ATCC 43099]
          Length = 260

 Score = 42.1 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 9/42 (21%)

Query: 15 QVHSSY---SLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
           VHS+Y   S L G      ++    +     I   D  N+ 
Sbjct: 5  HVHSNYSDGSFLRG------MVRAAESADLDGIGFADHCNVA 40


>gi|212213026|ref|YP_002303962.1| DNA Polymerase X family [Coxiella burnetii CbuG_Q212]
 gi|212011436|gb|ACJ18817.1| DNA Polymerase X family [Coxiella burnetii CbuG_Q212]
          Length = 594

 Score = 42.1 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 12/41 (29%)

Query: 14  LQVHSS-----YSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H++     YSL         + +         +AITD 
Sbjct: 363 LHCHTNATDGKYSL-------EAMAEAAQTRGYRYMAITDH 396


>gi|317056323|ref|YP_004104790.1| histidinol phosphate phosphatase HisJ family [Ruminococcus albus
          7]
 gi|315448592|gb|ADU22156.1| histidinol phosphate phosphatase HisJ family [Ruminococcus albus
          7]
          Length = 282

 Score = 42.1 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 9/50 (18%)

Query: 15 QVHSSYS--LLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA 62
            HSSYS    + A     +  K A       A+TD  +    + F ++A
Sbjct: 9  HTHSSYSPDAEDSA---EAMCLKAAELGMSVYALTDHCD----VNFWEEA 51


>gi|315187051|gb|EFU20808.1| hypothetical protein SpithDRAFT_0416 [Spirochaeta thermophila DSM
           6578]
          Length = 453

 Score = 42.1 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 14/88 (15%)

Query: 15  QVHSSYSLLEGALSL--NNILD-KIAADQQPAIAIT---DTNNLFSALEFSQKACAAGIQ 68
            +H+ YS      S    ++   + A      +A+    D ++L +A E  + +   G+ 
Sbjct: 51  HIHTCYSF-----SPYTPSMAALRAAEAG---LAVAGSVDHDSLAAAEEMVEASRFLGLG 102

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTV 96
            I+G +L +  ++      +   P    
Sbjct: 103 GIVGFELRVSFRNTPFGDRKLNNPDLEG 130


>gi|294507701|ref|YP_003571759.1| DNA polymerase IV (family X) [Salinibacter ruber M8]
 gi|294344029|emb|CBH24807.1| DNA polymerase IV (family X) [Salinibacter ruber M8]
          Length = 584

 Score = 42.1 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS+YS  +GA +L  +             I D 
Sbjct: 347 LHNHSTYS--DGAHTLREMALAARDRGYSYFGICDH 380


>gi|289583184|ref|YP_003481650.1| PHP domain protein [Natrialba magadii ATCC 43099]
 gi|289532737|gb|ADD07088.1| PHP domain protein [Natrialba magadii ATCC 43099]
          Length = 228

 Score = 42.1 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 1/90 (1%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPII 71
           V L  HS+ S  +G   +  IL++  A    AIA+TD + + ++LE +++A   G+  I 
Sbjct: 4   VELHAHSALSY-DGRDPVELILEQADAVGLDAIAVTDHDEIDASLEAAERAPDYGLIGIP 62

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
             ++       L    +   P        L
Sbjct: 63  AMEISSKAGHILGFGLEEAVPPGLSYETTL 92


>gi|94676885|ref|YP_588765.1| putative hydrolase [Baumannia cicadellinicola str. Hc
          (Homalodisca coagulata)]
 gi|166988625|sp|Q1LTE9|Y316_BAUCH RecName: Full=Putative hydrolase BCI_0316
 gi|94220035|gb|ABF14194.1| PHP family protein [Baumannia cicadellinicola str. Hc
          (Homalodisca coagulata)]
          Length = 244

 Score = 42.1 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 11/42 (26%)

Query: 14 LQVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L VH+     +YS L+      + + +        IAITD  
Sbjct: 6  LHVHTIASTHAYSTLQ------DYIAEAKQKGIKLIAITDHG 41


>gi|83815721|ref|YP_445801.1| phosphotransferase domain-containing protein [Salinibacter ruber
           DSM 13855]
 gi|83757115|gb|ABC45228.1| PHP domain protein [Salinibacter ruber DSM 13855]
          Length = 576

 Score = 42.1 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS+YS  +GA +L  +             I D 
Sbjct: 339 LHNHSTYS--DGAHTLREMALAARDRGYSYFGICDH 372


>gi|15790241|ref|NP_280065.1| hypothetical protein VNG1168C [Halobacterium sp. NRC-1]
 gi|169235970|ref|YP_001689170.1| hypothetical protein OE2676R [Halobacterium salinarum R1]
 gi|10580703|gb|AAG19545.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167727036|emb|CAP13822.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 197

 Score = 42.1 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVD 873
           L  + G+G     +I+E      PF+S  D   RVD
Sbjct: 132 LNLLPGIGEKLRDNILEERKRRGPFESFADVSERVD 167


>gi|197121699|ref|YP_002133650.1| PHP domain protein [Anaeromyxobacter sp. K]
 gi|196171548|gb|ACG72521.1| PHP domain protein [Anaeromyxobacter sp. K]
          Length = 592

 Score = 42.1 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
             H+++S  +G  S+  +     A     + ITD +    
Sbjct: 362 HCHTTWS--DGRASVEEMARAAEALGMAYLTITDHSGSAG 399


>gi|41351032|gb|AAH65655.1| Zgc:77395 [Danio rerio]
          Length = 550

 Score = 42.1 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
           L +++G+    A++I+E  +   PF S+ED    V    +N  +L+ 
Sbjct: 137 LMSVRGITEKIAKNIVEFRSVHGPFKSIEDL---VKVANINSSLLDR 180


>gi|51556247|ref|NP_991322.1| endonuclease/exonuclease/phosphatase family domain-containing
           protein 1 [Danio rerio]
 gi|82187405|sp|Q6TEQ0|EEPD1_DANRE RecName: Full=Endonuclease/exonuclease/phosphatase family
           domain-containing protein 1
 gi|37682097|gb|AAQ97975.1| KIAA1706-like protein [Danio rerio]
          Length = 550

 Score = 42.1 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
           L +++G+    A++I+E  +   PF S+ED    V    +N  +L+ 
Sbjct: 137 LMSVRGITEKIAKNIVEFRSVHGPFKSIEDL---VKVANINSSLLDR 180


>gi|85813996|emb|CAG38674.1| putative DNA polymerase beta chain [Micromonospora echinospora]
          Length = 357

 Score = 42.1 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             HS +S  +G   +  +           + +TD 
Sbjct: 106 HTHSDWS--DGGSPIEEMALAAVELGHEYLVLTDH 138


>gi|20093609|ref|NP_613456.1| phosphatase [Methanopyrus kandleri AV19]
 gi|19886471|gb|AAM01386.1| Predicted phosphatase of the PHP family [Methanopyrus kandleri
          AV19]
          Length = 236

 Score = 42.1 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  H+ YS  +G  +    +          +A+TD  
Sbjct: 7  LHTHTVYS--DGHGTPLENVLAAEERGLETVALTDHG 41


>gi|323702092|ref|ZP_08113760.1| PHP domain protein [Desulfotomaculum nigrificans DSM 574]
 gi|323532974|gb|EGB22845.1| PHP domain protein [Desulfotomaculum nigrificans DSM 574]
          Length = 569

 Score = 42.1 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  + A+ L +++ +         AITD 
Sbjct: 340 LHIHTTWS--DSAMDLADVVQRCQEKGYTYAAITDH 373


>gi|295109260|emb|CBL23213.1| Histidinol phosphatase and related hydrolases of the PHP family
           [Ruminococcus obeum A2-162]
          Length = 237

 Score = 42.1 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 64/222 (28%), Gaps = 49/222 (22%)

Query: 15  QVHSSYSLLEGAL-SLNNILDKIAADQQPAIAITDT--NNLFS-----------ALEFSQ 60
             HS  S   G   +++++    +      + ITD     L +           A +   
Sbjct: 7   HTHSIAS-GHGTSCTISDMAKAASKKGLKLLGITDHGPGTLAAGTSSYFRSLTYAPK--- 62

Query: 61  KACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMY 120
                GI+ + G +L+I   +     N             +       Y+          
Sbjct: 63  --KRFGIELLFGVELNILDTEGHLDLNDELLGELDYAIASMHAQN---YK--------SG 109

Query: 121 LLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGD 180
            +++         ++L  +    + +L    +            +        +  +F  
Sbjct: 110 TVEEN------TSAYLNAMRHPCVKVLGHCDNPAFP-----VDYETLAFGAKEYGVIFEI 158

Query: 181 RLYVNLQR----HRGYDRYRESQVVQLAYTHELPLVATNNSL 218
                       +RG  R    ++++     ELP+V +++S 
Sbjct: 159 N---EASLMPDGYRGDTRANNKEILRCCKKLELPIVLSSDSH 197


>gi|86739405|ref|YP_479805.1| aspartyl-tRNA synthetase [Frankia sp. CcI3]
 gi|86566267|gb|ABD10076.1| aspartyl-tRNA synthetase [Frankia sp. CcI3]
          Length = 620

 Score = 42.1 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 6/55 (10%), Positives = 17/55 (30%), Gaps = 4/55 (7%)

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             M      +  +      + +   V  ++Q     G  + +V   + +   +A  
Sbjct: 28   AMRTHMCGDLRSDHVDQTVTVCGWVAHRRQH----GQSLTFVDLRDHSGIIQAVV 78


>gi|325264395|ref|ZP_08131126.1| putative PHP domain protein [Clostridium sp. D5]
 gi|324030466|gb|EGB91750.1| putative PHP domain protein [Clostridium sp. D5]
          Length = 291

 Score = 42.1 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 31/145 (21%)

Query: 14  LQVHS------SYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           L +HS       +           ++D          AI D N+  +      +A   G+
Sbjct: 6   LHMHSVISDDGEF-------EPEKLMDMCREAGLKTAAIADHNSTRAVKRALARAGENGL 58

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGY----QRLI---ELVSRMY 120
           + I   +LD       ++   G    P  P           Y    Q L    ++ S+  
Sbjct: 59  ELIPAVELD-CFIRGKELHVLGYGIDPDYPE----------YGKVEQNLFDQEQVSSKER 107

Query: 121 LLDQGKQSVRICLSWLQEIGTEGLI 145
           L       + +    + E+  +G++
Sbjct: 108 LGLAEAAGLIVDHDLVYELAHDGVV 132


>gi|330470618|ref|YP_004408361.1| hypothetical protein VAB18032_03385 [Verrucosispora maris
           AB-18-032]
 gi|328813589|gb|AEB47761.1| hypothetical protein VAB18032_03385 [Verrucosispora maris
           AB-18-032]
          Length = 353

 Score = 42.1 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             HS +S  +G   +  +           + +TD 
Sbjct: 106 HTHSDWS--DGGSPIEEMALAAVELGHEYLVLTDH 138


>gi|227486304|ref|ZP_03916620.1| metal-dependent phosphoesterase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235715|gb|EEI85730.1| metal-dependent phosphoesterase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 276

 Score = 42.1 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 31/117 (26%)

Query: 11  FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF--SQKACAAG-- 66
           +  L +H+S+S  +G   +  +++         +AITD +           +K    G  
Sbjct: 3   YADLHMHTSFS--DGDYDIKEVIEMAVGAGIKTMAITDHD------RADHFEKIKEIGKD 54

Query: 67  --IQPIIGCQLDIDMQDNLKMTNQGKTPFP-----------------TVPSIVLLVS 104
             I  I G ++     D+ K  +      P                     + LL  
Sbjct: 55  FDIILIKGLEISAYDFDSHKKVHIVGLFLPESTPEIDKLNAITNTKREAYHLSLLPK 111


>gi|85704469|ref|ZP_01035571.1| hypothetical protein ROS217_05304 [Roseovarius sp. 217]
 gi|85670877|gb|EAQ25736.1| hypothetical protein ROS217_05304 [Roseovarius sp. 217]
          Length = 307

 Score = 42.1 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS  S  +G L    +  + AA+    IA+TD 
Sbjct: 16 LHTHSDRS--DGVLPPEEVCRRYAAEGYDFIALTDH 49


>gi|307327194|ref|ZP_07606382.1| PHP domain protein [Streptomyces violaceusniger Tu 4113]
 gi|306887085|gb|EFN18083.1| PHP domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 581

 Score = 42.1 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 27/101 (26%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS-QKACAAGI----- 67
           L  H++  L +G   L +++ K         AITD      A +   Q+     +     
Sbjct: 342 LHTHTN--LTDGLEPLEDMITKAERRGYAYYAITDH-----APKLYMQQMTEEKMLAQRE 394

Query: 68  --------------QPIIGCQLDIDMQDNLKMTNQGKTPFP 94
                         + + G +L+ID + ++    +    F 
Sbjct: 395 RVRELDRGRGRGHTRLLHGVELNIDTEGDVDWPPEFLEDFD 435


>gi|282857574|ref|ZP_06266799.1| PHP domain protein [Pyramidobacter piscolens W5455]
 gi|282584587|gb|EFB89930.1| PHP domain protein [Pyramidobacter piscolens W5455]
          Length = 216

 Score = 42.1 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 15 QVHS-SYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
           +H+  YS  +  L +   + +        + +TD + L  A E 
Sbjct: 6  HMHTAEYSP-DSFLPIAEAVARAREMGIGGLCVTDHDTL-GAREA 48


>gi|193216104|ref|YP_001997303.1| PHP domain-containing protein [Chloroherpeton thalassium ATCC
          35110]
 gi|193089581|gb|ACF14856.1| PHP domain protein [Chloroherpeton thalassium ATCC 35110]
          Length = 237

 Score = 42.1 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +H+++S  +GALSL + ++  A +    I ITD 
Sbjct: 11 HIHTAFS--DGALSLEDTIELYAENGFDVICITDH 43


>gi|237753409|ref|ZP_04583889.1| competence protein 1 [Helicobacter winghamensis ATCC BAA-430]
 gi|229375676|gb|EEO25767.1| competence protein 1 [Helicobacter winghamensis ATCC BAA-430]
          Length = 90

 Score = 42.1 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
           L ++KG+G   A+ I++  A +PF S+++    V+ K    + +E
Sbjct: 28  LMSVKGIGEIKAQAILDYRAKQPFKSVDEL---VNVKGFGDKSVE 69


>gi|188586730|ref|YP_001918275.1| copper amine oxidase domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351417|gb|ACB85687.1| copper amine oxidase domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 502

 Score = 42.1 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
           L  I  +    A  I+E   ++PF SL+D   RV
Sbjct: 450 LTQIINIDVDRAEQIVELRKERPFTSLDDL-ERV 482


>gi|325923386|ref|ZP_08185055.1| competence protein ComEA-like protein with helix-hairpin-helix
           repeat region [Xanthomonas gardneri ATCC 19865]
 gi|325924412|ref|ZP_08185945.1| competence protein ComEA-like protein with helix-hairpin-helix
           repeat region [Xanthomonas gardneri ATCC 19865]
 gi|325545108|gb|EGD16429.1| competence protein ComEA-like protein with helix-hairpin-helix
           repeat region [Xanthomonas gardneri ATCC 19865]
 gi|325546131|gb|EGD17316.1| competence protein ComEA-like protein with helix-hairpin-helix
           repeat region [Xanthomonas gardneri ATCC 19865]
          Length = 124

 Score = 42.1 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 7/50 (14%)

Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLES---LVFAG 889
            VG + A  I+E   A+ PF S E+       K +  + +E    L+  G
Sbjct: 57  NVGRSKAEAIVEHRQANGPFKSAEELAL---VKGIGLKTVERNRDLIEVG 103


>gi|325926055|ref|ZP_08187418.1| competence protein ComEA-like protein with helix-hairpin-helix
           repeat region [Xanthomonas perforans 91-118]
 gi|325543513|gb|EGD14933.1| competence protein ComEA-like protein with helix-hairpin-helix
           repeat region [Xanthomonas perforans 91-118]
          Length = 124

 Score = 42.1 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 7/50 (14%)

Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLES---LVFAG 889
            VG + A  I+E   A+ PF S E+       K +  + +E    L+  G
Sbjct: 57  NVGRSKAEAIVEHRQANGPFKSAEELAL---VKGIGLKTVERNRDLIEVG 103


>gi|325916443|ref|ZP_08178715.1| competence protein ComEA-like protein with helix-hairpin-helix
           repeat region [Xanthomonas vesicatoria ATCC 35937]
 gi|325537363|gb|EGD09087.1| competence protein ComEA-like protein with helix-hairpin-helix
           repeat region [Xanthomonas vesicatoria ATCC 35937]
          Length = 124

 Score = 42.1 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 7/50 (14%)

Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLES---LVFAG 889
            VG + A  I+E   A+ PF S E+       K +  + +E    L+  G
Sbjct: 57  NVGRSKAEAIVEHRQANGPFKSAEELAL---VKGIGLKTVERNRDLIEVG 103


>gi|294626256|ref|ZP_06704859.1| ComEA-related DNA uptake protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294664605|ref|ZP_06729945.1| ComEA-related DNA uptake protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292599402|gb|EFF43536.1| ComEA-related DNA uptake protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292605633|gb|EFF48944.1| ComEA-related DNA uptake protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 135

 Score = 42.1 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 7/50 (14%)

Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLES---LVFAG 889
            VG + A  I+E   A+ PF S E+       K +  + +E    L+  G
Sbjct: 68  NVGRSKAEAIVEHRQANGPFKSAEELAL---VKGIGLKTVERNRDLIEVG 114


>gi|292654904|ref|YP_003534801.1| DNA polymerase X [Haloferax volcanii DS2]
 gi|291371449|gb|ADE03676.1| DNA polymerase X [Haloferax volcanii DS2]
          Length = 582

 Score = 42.1 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H+  S  +G  S+  ++   A       A+TD 
Sbjct: 352 LHTHTDRS--DGDNSIAEMVAAAAERGYDYHAVTDH 385


>gi|289664543|ref|ZP_06486124.1| ComEA-related DNA uptake protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 124

 Score = 42.1 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 7/50 (14%)

Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLES---LVFAG 889
            VG + A  I+E   A+ PF S E+       K +  + +E    L+  G
Sbjct: 57  NVGRSKAEAIVEHRQANGPFKSAEELAL---VKGIGLKTVERNRDLIEVG 103


>gi|206901292|ref|YP_002251736.1| putative secreted protein [Dictyoglomus thermophilum H-6-12]
 gi|206740395|gb|ACI19453.1| putative secreted protein [Dictyoglomus thermophilum H-6-12]
          Length = 480

 Score = 42.1 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 25/108 (23%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA----LEFSQKACAAGIQPI 70
            +HS +S  +G LS+  ++          I +TD N +        EF          PI
Sbjct: 193 HLHSYHS--DGELSIEELIKFSIKRGLDFIFLTDHNKISGFHTIEWEFY---------PI 241

Query: 71  I-GCQLDIDMQDNLKMTNQGKTPFP-TVPSIVLLVSTAEGYQRLIELV 116
             G +        L +  +    +    PS+        G +RL E+V
Sbjct: 242 YGGIEFTTFWGHFLGLGLKEYISWDLVNPSL--------GIRRLSEMV 281


>gi|188578091|ref|YP_001915020.1| DNA transport competence protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188522543|gb|ACD60488.1| DNA transport competence protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 96

 Score = 42.1 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 7/50 (14%)

Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLES---LVFAG 889
            VG + A  I+E   A+ PF S E+       K +  + +E    L+  G
Sbjct: 29  NVGRSKAEAIVEHRQANGPFKSAEELAL---VKGIGLKTVERNRDLIEVG 75


>gi|58580932|ref|YP_199948.1| DNA transport competence protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58425526|gb|AAW74563.1| DNA transport competence protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 135

 Score = 42.1 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 7/50 (14%)

Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLES---LVFAG 889
            VG + A  I+E   A+ PF S E+       K +  + +E    L+  G
Sbjct: 68  NVGRSKAEAIVEHRQANGPFKSAEELAL---VKGIGLKTVERNRDLIEVG 114


>gi|21232212|ref|NP_638129.1| DNA transport competence protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767659|ref|YP_242421.1| DNA transport competence protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188990775|ref|YP_001902785.1| ComEA-related DNA uptake protein, probable [Xanthomonas campestris
           pv. campestris str. B100]
 gi|289671172|ref|ZP_06492247.1| ComEA-related DNA uptake protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
 gi|21113970|gb|AAM42053.1| DNA transport competence protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572991|gb|AAY48401.1| DNA transport competence protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167732535|emb|CAP50729.1| ComEA-related DNA uptake protein, probable [Xanthomonas campestris
           pv. campestris]
          Length = 110

 Score = 42.1 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 7/50 (14%)

Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLES---LVFAG 889
            VG + A  I+E   A+ PF S E+       K +  + +E    L+  G
Sbjct: 43  NVGRSKAEAIVEHRQANGPFKSAEELAL---VKGIGLKTVERNRDLIEVG 89


>gi|78048652|ref|YP_364827.1| ComEA-related DNA uptake protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037082|emb|CAJ24827.1| ComEA-related DNA uptake protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 135

 Score = 42.1 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 7/50 (14%)

Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLES---LVFAG 889
            VG + A  I+E   A+ PF S E+       K +  + +E    L+  G
Sbjct: 68  NVGRSKAEAIVEHRQANGPFKSAEELAL---VKGIGLKTVERNRDLIEVG 114


>gi|21243678|ref|NP_643260.1| DNA transport competence protein [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|84622864|ref|YP_450236.1| DNA transport competence protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|166711238|ref|ZP_02242445.1| DNA transport competence protein [Xanthomonas oryzae pv. oryzicola
           BLS256]
 gi|21109258|gb|AAM37796.1| DNA transport competence protein [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|84366804|dbj|BAE67962.1| DNA transport competence protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 110

 Score = 42.1 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 7/50 (14%)

Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLES---LVFAG 889
            VG + A  I+E   A+ PF S E+       K +  + +E    L+  G
Sbjct: 43  NVGRSKAEAIVEHRQANGPFKSAEELAL---VKGIGLKTVERNRDLIEVG 89


>gi|220906345|ref|YP_002481656.1| PHP domain-containing protein [Cyanothece sp. PCC 7425]
 gi|219862956|gb|ACL43295.1| PHP domain protein [Cyanothece sp. PCC 7425]
          Length = 228

 Score = 42.1 bits (97), Expect = 0.51,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +H+ YS  +G L+   ++ +        +AITD 
Sbjct: 34 HLHTIYS--DGRLAPLELMQQAIDHGLQGLAITDH 66


>gi|302335767|ref|YP_003800974.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Olsenella uli DSM 7084]
 gi|301319607|gb|ADK68094.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Olsenella uli DSM 7084]
          Length = 229

 Score = 42.1 bits (97), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
           L  + GVG  TA+ I+E    + PF S ED   
Sbjct: 179 LKGLSGVGEATAKSIVEDRGKNGPFSSPEDLMR 211


>gi|262165446|ref|ZP_06033183.1| PHP family hydrolase [Vibrio mimicus VM223]
 gi|262025162|gb|EEY43830.1| PHP family hydrolase [Vibrio mimicus VM223]
          Length = 290

 Score = 42.1 bits (97), Expect = 0.52,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++++  +     +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQQLIERAVSFNIDVLAITDHDTVAALSDARAYITEQQHPLQLVN 62

Query: 72 GCQLD 76
          G ++ 
Sbjct: 63 GIEIS 67


>gi|260654227|ref|ZP_05859717.1| putative metal dependent phosphohydrolase [Jonquetella anthropi E3_33
            E1]
 gi|260630860|gb|EEX49054.1| putative metal dependent phosphohydrolase [Jonquetella anthropi E3_33
            E1]
          Length = 383

 Score = 42.1 bits (97), Expect = 0.52,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 19/61 (31%)

Query: 972  KPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +  L     + + E  A   G       +V S +  + R  +    V  S+      A  
Sbjct: 20   RSPLMSDTNRTFAEVSALSEGERFNAFGLVTSVRMLRDRNDNPYWNVELSDKTGTITAKI 79

Query: 1032 F 1032
            +
Sbjct: 80   W 80


>gi|28493351|ref|NP_787512.1| comE operon protein 1-like protein [Tropheryma whipplei str. Twist]
 gi|28572539|ref|NP_789319.1| DNA uptake protein [Tropheryma whipplei TW08/27]
 gi|28410671|emb|CAD67057.1| putative DNA uptake protein [Tropheryma whipplei TW08/27]
 gi|28476392|gb|AAO44481.1| comE operon protein 1-like protein [Tropheryma whipplei str. Twist]
          Length = 193

 Score = 42.1 bits (97), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDF 868
           L +IKG+G  TA+ I++      PF  LED 
Sbjct: 143 LQSIKGIGKATAKRIIDWRNKHGPFKRLEDL 173


>gi|224826311|ref|ZP_03699413.1| PHP domain protein [Lutiella nitroferrum 2002]
 gi|224601412|gb|EEG07593.1| PHP  domain protein [Lutiella nitroferrum 2002]
          Length = 284

 Score = 42.1 bits (97), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS +S  +GALS   ++ + A      +A+TD +
Sbjct: 6  LHFHSLFS--DGALSPAEVIRRGAERGATLLALTDHD 40


>gi|294339731|emb|CAZ88093.1| putative RND efflux system outer membrane lipoprotein NodT [Thiomonas
            sp. 3As]
          Length = 536

 Score = 42.1 bits (97), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 43/142 (30%), Gaps = 21/142 (14%)

Query: 890  ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDK----ITLEKFSV 945
            A D  G +R  L    + +    +W      +   ++      T   +      ++    
Sbjct: 164  AFDLSGGNRRAL----EALAAQTEWRRYQLDSAQLSLAGAVVATAVKQALLAAQIDALQK 219

Query: 946  ENSSVRFENE----QRVLGF-YFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAM 1000
              ++ + + E    +  LG    S   +   +  + +           +       LA  
Sbjct: 220  MLATQQEQLEITRARERLGVATASD--IATLQTQMEQTRA-SIAPLRNSADQAVHLLA-- 274

Query: 1001 VVSKQQKKTRKGSRIGWVTFSE 1022
            V+S Q+  T K  R    T  +
Sbjct: 275  VLSGQEPGTAKNPRF---TLDD 293


>gi|269837328|ref|YP_003319556.1| PHP domain-containing protein [Sphaerobacter thermophilus DSM
           20745]
 gi|269786591|gb|ACZ38734.1| PHP domain protein [Sphaerobacter thermophilus DSM 20745]
          Length = 223

 Score = 42.1 bits (97), Expect = 0.53,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 60/217 (27%), Gaps = 58/217 (26%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA--------G 66
             H+ +S  +G LS      +        + +TD   +    E  +   A          
Sbjct: 6   HTHTFWS--DGELSPMEQARRAVQRGYRVLGLTDHVGVGGVPELIKALKADREIIERYWP 63

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGK 126
           I  ++G +L     + +      +        IV+L                 +     +
Sbjct: 64  ITVVVGVELTHVPAEAI--PEAARFALDAGAEIVVL-----------------HGETPVE 104

Query: 127 QSVRICLSWLQEIGTEGLIMLTG-----GSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
                        G+    +++G     G  G I         +   +            
Sbjct: 105 PVPE---------GSNHAAIISGLVDVIGHPGHIT-------EEDVREAAAR-------D 141

Query: 182 LYVNLQRHRGYDRYRESQVVQLAYTHELPLVATNNSL 218
           +++ +   RG+       V +LA  +   ++  +++ 
Sbjct: 142 IFLEITSRRGH-SLTNGHVARLAQRYGAKMIVNSDTH 177


>gi|254284238|ref|ZP_04959206.1| PHP C-terminal domain protein [gamma proteobacterium NOR51-B]
 gi|219680441|gb|EED36790.1| PHP C-terminal domain protein [gamma proteobacterium NOR51-B]
          Length = 269

 Score = 42.1 bits (97), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 17 HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI--QPIIGCQ 74
          HS+ S  +GAL    +L ++        A+TD + +        +   AG+  + + G +
Sbjct: 2  HSTAS--DGALRPRELLARLREAGVERFALTDHDTIAG----FSELRDAGVGDELVTGVE 55

Query: 75 LDIDMQD 81
          L      
Sbjct: 56 LSCAWSG 62


>gi|315638295|ref|ZP_07893476.1| competence protein ComEA [Campylobacter upsaliensis JV21]
 gi|315481642|gb|EFU72265.1| competence protein ComEA [Campylobacter upsaliensis JV21]
          Length = 79

 Score = 42.1 bits (97), Expect = 0.54,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L ++KG+G T AR I++   ++ F S+E+       K +  +  E L
Sbjct: 29  LKSLKGIGETKARAILDYRKEQNFTSIEELKK---VKGIGEKTFEEL 72


>gi|292655208|ref|YP_003535105.1| PHP domain-containing protein [Haloferax volcanii DS2]
 gi|291370636|gb|ADE02863.1| PHP domain protein [Haloferax volcanii DS2]
          Length = 227

 Score = 42.1 bits (97), Expect = 0.54,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 12 VHLQVHSSYSLL-EGALSLNNILDKIAADQQPAIAITDTN 50
          V L  HS  SL  +G   +  +L++  A    A+A+TD +
Sbjct: 4  VELHSHS--SLSYDGRDPIEYLLEQAVAVGLDALAVTDHD 41


>gi|95928240|ref|ZP_01310988.1| glycosyl transferase, group 1 [Desulfuromonas acetoxidans DSM
          684]
 gi|95135511|gb|EAT17162.1| glycosyl transferase, group 1 [Desulfuromonas acetoxidans DSM
          684]
          Length = 813

 Score = 42.1 bits (97), Expect = 0.54,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 16/49 (32%), Gaps = 12/49 (24%)

Query: 14 LQVHSSYS------LLE--GALS----LNNILDKIAADQQPAIAITDTN 50
          L VHS YS       L+  GA         I           + ITD N
Sbjct: 6  LHVHSKYSNHPSEWFLQRLGASESYTEPETIYKLARQRGMDFVTITDHN 54


>gi|294676571|ref|YP_003577186.1| PHP domain-containing protein [Rhodobacter capsulatus SB 1003]
 gi|294475391|gb|ADE84779.1| PHP domain protein [Rhodobacter capsulatus SB 1003]
          Length = 317

 Score = 42.1 bits (97), Expect = 0.55,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS  S  +GAL    +  + AA+    +A+TD 
Sbjct: 16 LHGHSDRS--DGALPPEEVCRRYAAEGYDFLALTDH 49


>gi|260434650|ref|ZP_05788620.1| PHP domain protein [Synechococcus sp. WH 8109]
 gi|260412524|gb|EEX05820.1| PHP domain protein [Synechococcus sp. WH 8109]
          Length = 215

 Score = 42.1 bits (97), Expect = 0.55,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
            H+  S  +G+L    ++ +        +A+TD ++
Sbjct: 24 HCHTVCS--DGSLEPIKLIQQATERGLKHLAVTDHHS 58


>gi|150020557|ref|YP_001305911.1| phosphotransferase domain-containing protein [Thermosipho
          melanesiensis BI429]
 gi|149793078|gb|ABR30526.1| PHP C-terminal domain protein [Thermosipho melanesiensis BI429]
          Length = 267

 Score = 42.1 bits (97), Expect = 0.55,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 29/75 (38%), Gaps = 8/75 (10%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
           +H++ S  +G  S  ++++ +        +ITD + +       +         I G +
Sbjct: 6  HLHTTAS--DGTFSPEDLINLLKEKNIEYFSITDHDTVDGI----KNIREKNF--IPGVE 57

Query: 75 LDIDMQDNLKMTNQG 89
          + ++    L +   G
Sbjct: 58 ISVEYPSTLHILGYG 72


>gi|73976315|ref|XP_865627.1| PREDICTED: hypothetical protein XP_860534 isoform 3 [Canis
           familiaris]
          Length = 569

 Score = 42.1 bits (97), Expect = 0.55,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +I+G+    A  I++      PF S+ED   
Sbjct: 147 LMSIRGLTEKMAVSIVDYRREHGPFRSVEDLVR 179


>gi|73976313|ref|XP_539516.2| PREDICTED: hypothetical protein XP_539516 isoform 2 [Canis
           familiaris]
          Length = 564

 Score = 42.1 bits (97), Expect = 0.55,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +I+G+    A  I++      PF S+ED   
Sbjct: 147 LMSIRGLTEKMAVSIVDYRREHGPFRSVEDLVR 179


>gi|293401883|ref|ZP_06646024.1| putative PHP domain protein [Erysipelotrichaceae bacterium
          5_2_54FAA]
 gi|291304835|gb|EFE46083.1| putative PHP domain protein [Erysipelotrichaceae bacterium
          5_2_54FAA]
          Length = 297

 Score = 42.1 bits (97), Expect = 0.56,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +HS YS  +G  +   +++K+   +   IA++D N      E  Q      I+ I   
Sbjct: 6  LHMHSLYS-SDGQFTCQELIEKVKEAKLSLIALSDHNTAQGVDEMMQLGKQNEIRVIPAI 64

Query: 74 Q 74
          +
Sbjct: 65 E 65


>gi|290969110|ref|ZP_06560640.1| PHP domain protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290780870|gb|EFD93468.1| PHP domain protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 271

 Score = 42.1 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ 60
          L +H++ S  +G  +   ++ + A      +AITD +     +E   
Sbjct: 5  LHMHTTCS--DGVYTPQELIRRAAQANIRILAITDHDT----VEAHV 45


>gi|145591951|ref|YP_001153953.1| putative nucleotide binding protein [Pyrobaculum arsenaticum DSM
           13514]
 gi|145283719|gb|ABP51301.1| putative nucleotide binding protein [Pyrobaculum arsenaticum DSM
           13514]
          Length = 195

 Score = 42.1 bits (97), Expect = 0.58,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
           SL  ++GVG    + I+E    + F S ED   R  
Sbjct: 127 SLELLRGVGKRKVQEILEERKKRQFTSYEDVKQRTG 162


>gi|323451853|gb|EGB07729.1| hypothetical protein AURANDRAFT_64732 [Aureococcus anophagefferens]
          Length = 1021

 Score = 41.7 bits (96), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLES 884
           G+G   AR ++EA A++PFD L++  +R+    L++R  E+
Sbjct: 105 GIGVVRARRVVEARAERPFDDLDEALARL---GLSKRQAEN 142


>gi|192359221|ref|YP_001982585.1| integral membrane protein [Cellvibrio japonicus Ueda107]
 gi|190685386|gb|ACE83064.1| integral membrane protein [Cellvibrio japonicus Ueda107]
          Length = 102

 Score = 41.7 bits (96), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLES 884
           L  +KG+GT  A  I+    A+  F ++E     +D K +     E+
Sbjct: 52  LTQLKGIGTKKAEAIIAWRNANGKFKTIEQL---MDVKGIGEATFEA 95


>gi|328953344|ref|YP_004370678.1| PHP domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328453668|gb|AEB09497.1| PHP domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 236

 Score = 41.7 bits (96), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 7/43 (16%)

Query: 14 LQVHSSYSLL---EGALSLNNILDKIAADQQPAIAITDTNNLF 53
          L VH+    L   + A  L  I+  +      A A+TD N L 
Sbjct: 16 LHVHT----LVSKDAAAPLAAIIRAMKRLGLNAAALTDHNALA 54


>gi|210608467|ref|ZP_03287843.1| hypothetical protein CLONEX_00022 [Clostridium nexile DSM 1787]
 gi|210153043|gb|EEA84049.1| hypothetical protein CLONEX_00022 [Clostridium nexile DSM 1787]
          Length = 241

 Score = 41.7 bits (96), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 21/89 (23%)

Query: 15 QVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTN----NLFSALEFSQKAC-- 63
            H+     +YS      ++  +          AIA T+             F +     
Sbjct: 8  HSHTLVSGHAYS------TIQEMAKMAREHGMEAIAFTEHAPKMPGTCGIFYF-ENLKIV 60

Query: 64 ---AAGIQPIIGCQLDIDMQDNLKMTNQG 89
               GI+ + G +L+I   +       G
Sbjct: 61 PRERYGIKMLFGTELNIMDSEGTVDMRDG 89


>gi|326421338|gb|ADZ73697.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Moschus moschiferus]
          Length = 224

 Score = 41.7 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 8/137 (5%)

Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            +  G+++ +A +I E       +   +  A    V + +         V+F     +  
Sbjct: 24  MTLPGVTRAVARSIVEYREYIGGFKKVEDLALVSGVGATKL------EQVKFEICVSSKG 77

Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS-LAAIKGVGTTTARHIM 854
                      +D           +     +  +V  N    + L +++G+    A  I+
Sbjct: 78  SSAQHSPSSLRRDLMAEQQPHHLATAAAVPLTPRVNINTATPAQLMSVRGLTEKMAVSIV 137

Query: 855 E-ASADKPFDSLEDFCS 870
           +      PF S+ED   
Sbjct: 138 DYRREHGPFRSVEDLVR 154


>gi|326421336|gb|ADZ73696.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Elaphurus davidianus]
          Length = 224

 Score = 41.7 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 8/137 (5%)

Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            +  G+++ +A +I E       +   +  A    V + +         V+F     +  
Sbjct: 24  MTLPGVTRAVARSIVEYREYIGGFKKVEDLALVSGVGATKL------EQVKFEICVSSKG 77

Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS-LAAIKGVGTTTARHIM 854
                      +D           +     +  +V  N    + L +++G+    A  I+
Sbjct: 78  SSAQHSPSSLRRDLMAEQQPHHLATAAAVPLTPRVNINTATPAQLMSVRGLTEKMAVSIV 137

Query: 855 E-ASADKPFDSLEDFCS 870
           +      PF S+ED   
Sbjct: 138 DYRREHGPFRSVEDLVR 154


>gi|299140056|ref|ZP_07033225.1| PHP domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298597902|gb|EFI54071.1| PHP domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 628

 Score = 41.7 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN-NLF 53
           L +H++ S  +G  S+  + +         IAITD + NL 
Sbjct: 366 LHMHTTES--DGGNSIREMAEAAIGRGLEYIAITDHSKNLA 404


>gi|77735773|ref|NP_001029581.1| endonuclease/exonuclease/phosphatase family domain-containing
           protein 1 [Bos taurus]
 gi|122145064|sp|Q3MHJ7|EEPD1_BOVIN RecName: Full=Endonuclease/exonuclease/phosphatase family
           domain-containing protein 1
 gi|75948260|gb|AAI05213.1| Endonuclease/exonuclease/phosphatase family domain containing 1
           [Bos taurus]
 gi|296488465|gb|DAA30578.1| endonuclease/exonuclease/phosphatase family domain-containing
           protein 1 [Bos taurus]
          Length = 571

 Score = 41.7 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 8/137 (5%)

Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            +  G+++ +A +I E       +   +  A    V + +         V+F     +  
Sbjct: 51  MTLPGVTRAVARSIVEYREYIGGFKKVEDLALVSGVGATKL------EQVKFEICVSSKG 104

Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS-LAAIKGVGTTTARHIM 854
                      +D           +     +  +V  N    + L +++G+    A  I+
Sbjct: 105 SSAQHSPSSLRRDLMAEQQPHHLATAAAVPLTPRVNINTATPAQLMSVRGLTEKMAVSIV 164

Query: 855 E-ASADKPFDSLEDFCS 870
           +      PF S+ED   
Sbjct: 165 DYRREHGPFRSVEDLVR 181


>gi|45825823|gb|AAS77580.1| KIAA1706 protein [Bos taurus]
          Length = 362

 Score = 41.7 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 8/137 (5%)

Query: 736 ASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
            +  G+++ +A +I E       +   +  A    V + +         V+F     +  
Sbjct: 47  MTLPGVTRAVARSIVEYREYIGGFKKVEDLALVSGVGATKL------EQVKFEICVSSKG 100

Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYS-LAAIKGVGTTTARHIM 854
                      +D           +     +  +V  N    + L +++G+    A  I+
Sbjct: 101 SSAQHSPSSLRRDLMAEQQPHHLATAAAVPLTPRVNINTATPAQLMSVRGLTEKMAVSIV 160

Query: 855 E-ASADKPFDSLEDFCS 870
           +      PF S+ED   
Sbjct: 161 DYRREHGPFRSVEDLVR 177


>gi|282850157|ref|ZP_06259536.1| PHP domain protein [Veillonella parvula ATCC 17745]
 gi|294793670|ref|ZP_06758807.1| PHP domain protein [Veillonella sp. 3_1_44]
 gi|282579650|gb|EFB85054.1| PHP domain protein [Veillonella parvula ATCC 17745]
 gi|294455240|gb|EFG23612.1| PHP domain protein [Veillonella sp. 3_1_44]
          Length = 275

 Score = 41.7 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 49/136 (36%), Gaps = 31/136 (22%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-----GIQP 69
            +HS +S  +G  +  ++L          +A+TD + +   ++  + A         I+ 
Sbjct: 6   HMHSIFS--DGVETPKDLLQHAIDCNVSMMALTDHDEIDG-IQALRAAQKKLDPNESIKI 62

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV--STAEGYQRLIELVSRMYLLDQGKQ 127
           + GC+   D +D                 I+           + LI+ ++      +GK+
Sbjct: 63  VNGCEFSADYKDKSI-------------HILGYCFDENN---KDLIDFIT----FFKGKR 102

Query: 128 SVRICLSWLQEIGTEG 143
             RI    ++    EG
Sbjct: 103 EERID-EIIRRCNNEG 117


>gi|297570214|ref|YP_003691558.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296926129|gb|ADH86939.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 85

 Score = 41.7 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
           L ++ G+G  TA  I+E   +   F S+E+    V  + +  R LESL
Sbjct: 33  LQSLPGIGPVTAAAIIEYRENNGEFASIEEL---VQVRGIGSRTLESL 77


>gi|311746059|ref|ZP_07719844.1| PHP domain protein [Algoriphagus sp. PR1]
 gi|126576276|gb|EAZ80554.1| PHP domain protein [Algoriphagus sp. PR1]
          Length = 555

 Score = 41.7 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS+YS  +G  SL  + +         + I+D 
Sbjct: 315 LHNHSTYS--DGKHSLRQMAEACRDLGYEYLGISDH 348


>gi|163803030|ref|ZP_02196916.1| putative metal-dependent phosphoesterase YciV [Vibrio sp. AND4]
 gi|159173204|gb|EDP58033.1| putative metal-dependent phosphoesterase YciV [Vibrio sp. AND4]
          Length = 285

 Score = 41.7 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G  +  +++D+  +     +AITD + +       Q        I+ I 
Sbjct: 5  LHSHTTAS--DGRFTPQDLVDRALSFDIEVLAITDHDTVDGLAPAKQYVEENNLPIKIIN 62

Query: 72 GCQLD 76
          G ++ 
Sbjct: 63 GIEIS 67


>gi|20808502|ref|NP_623673.1| single-stranded DNA-specific exonuclease [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517123|gb|AAM25277.1| Single-stranded DNA-specific exonuclease [Thermoanaerobacter
           tengcongensis MB4]
          Length = 491

 Score = 41.7 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 13/50 (26%)

Query: 27  LSLNNILDKIAADQQPAI-----AITDTNNLFSALEFSQKACAAGIQPII 71
           +     + +I A+   A+      IT       A E ++ A  AGI+ II
Sbjct: 80  IKP-EHVQQIKAEGFDAVITVDNGIT-------AFEAAKAAREAGIKLII 121


>gi|319789314|ref|YP_004150947.1| PHP domain protein [Thermovibrio ammonificans HB-1]
 gi|317113816|gb|ADU96306.1| PHP domain protein [Thermovibrio ammonificans HB-1]
          Length = 281

 Score = 41.7 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS+ S  +G  + + +++          ++TD + +    +   +    G+  I G 
Sbjct: 10 LHSHSTAS--DGTFTPSELVELAHLKGITLFSLTDHDTVDGLPQARLRGRELGVNVIPGI 67

Query: 74 QLD 76
          ++ 
Sbjct: 68 EVT 70


>gi|330506687|ref|YP_004383115.1| PHP domain-containing protein [Methanosaeta concilii GP-6]
 gi|328927495|gb|AEB67297.1| PHP domain protein [Methanosaeta concilii GP-6]
          Length = 221

 Score = 41.7 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 70/247 (28%), Gaps = 73/247 (29%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-----AAGIQ 68
           L VHS+ S  +G   +  IL   A      ++ITD + L  +    Q           + 
Sbjct: 5   LHVHSNCS--DGRDDVRTILRAAARRDLDGLSITDHDTLRGS---QQAMKIIQEDKLDLI 59

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQS 128
            I G ++                       +++L     G + L                
Sbjct: 60  LIPGAEVTTSEG-----------------HLLVL-----GIEDL---------------P 82

Query: 129 VR-ICLSWLQEIGTE-GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNL 186
            R +      ++  E G I +      P   A        A +   + K LFG       
Sbjct: 83  PRGLSPEETTDLAREQGGIAIVPHPYHPFRHAIGRIPECDAVEVYNS-KHLFG------- 134

Query: 187 QRHRGYDRYRESQVVQLAYTHELPLVATNNSLF--------LSEEDYEAHDVLMAVAHST 238
                      ++ +  A    LP VA ++S F           E  +A + + A+    
Sbjct: 135 --------IANARALIGAKRRHLPAVAGSDSHFAATVGLGVTEIEAADAFEAIEAIQAGR 186

Query: 239 VVSQKDR 245
                 R
Sbjct: 187 TRIIGKR 193


>gi|15920669|ref|NP_376338.1| hypothetical protein ST0457 [Sulfolobus tokodaii str. 7]
 gi|15621452|dbj|BAB65447.1| 222aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 222

 Score = 41.7 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVF 887
           +L  +  +G  T R I+E    +PF   +D  +RV  K +   ++E ++ 
Sbjct: 125 ALELLPNIGKKTLRIILEERKKQPFVDFKDIENRVGIKDVVGLLIERIIK 174


>gi|266624868|ref|ZP_06117803.1| putative PHP domain protein [Clostridium hathewayi DSM 13479]
 gi|288863253|gb|EFC95551.1| putative PHP domain protein [Clostridium hathewayi DSM 13479]
          Length = 276

 Score = 41.7 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 24/110 (21%)

Query: 15  QVHSSYSLL-EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
            +H+   L  +G   +  ++D    +   A+A+TD + L       Q+     ++ + G 
Sbjct: 6   HMHT---LCSDGIYEVETVVDMAVNNGILAMAVTDHDTLAGIGRARQRCQGR-VRYMTGT 61

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ---R---LIELVS 117
           +L    +        G  P P    ++       GY        L  L+S
Sbjct: 62  ELTCAER------PWGSLPVPQSIHLL-------GYGFDENDETLCALLS 98


>gi|238061545|ref|ZP_04606254.1| hypothetical protein MCAG_02511 [Micromonospora sp. ATCC 39149]
 gi|237883356|gb|EEP72184.1| hypothetical protein MCAG_02511 [Micromonospora sp. ATCC 39149]
          Length = 357

 Score = 41.7 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             HS +S  +G   +  +           + +TD 
Sbjct: 110 HTHSDWS--DGGSPIEEMALAAVELGHEYVVLTDH 142


>gi|167042717|gb|ABZ07437.1| putative protein of unknown function, DUF655 [uncultured marine
           crenarchaeote HF4000_ANIW133O4]
          Length = 186

 Score = 41.7 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDS----KKLNRRVLE 883
           +L  I G+G T    I++    +PF+S  D   R       K L++R++E
Sbjct: 123 ALELIPGIGKTYMTVIIKEREKEPFESFHDIEKRTGLKEPIKHLSQRIIE 172


>gi|121534130|ref|ZP_01665955.1| PHP C-terminal domain protein [Thermosinus carboxydivorans Nor1]
 gi|121307233|gb|EAX48150.1| PHP C-terminal domain protein [Thermosinus carboxydivorans Nor1]
          Length = 247

 Score = 41.7 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 7/91 (7%)

Query: 14  LQVHSSYSLLEGAL--SLNNILDKIAADQQPAIAITDTNNLFS--ALEFSQKACAAGIQP 69
           L VH+  S    A+  +  NI+   A      +A+TD N             A   G+  
Sbjct: 8   LHVHTVLSPC-AAVEMTPRNIIRHAADAGIDIVAVTDHN--AGDNVPAALAAAVGTGVTV 64

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           + G +++   + +L +     T F     +V
Sbjct: 65  LPGMEVETREEVHLVVLFDRLTAFRQWQRLV 95


>gi|116753971|ref|YP_843089.1| DNA polymerase II small subunit [Methanosaeta thermophila PT]
 gi|116665422|gb|ABK14449.1| DNA polymerase II small subunit [Methanosaeta thermophila PT]
          Length = 487

 Score = 41.7 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 6/61 (9%)

Query: 972  KPIL-RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            + +L ++M  +  E   A   G  + +  MV++ +     +      V   +P       
Sbjct: 123  RDLLSKRMSSRPIESLGAQTTGREVSVIGMVMAIRNTSRAR-----VVELEDPTGMVTVL 177

Query: 1031 F 1031
            F
Sbjct: 178  F 178


>gi|314933340|ref|ZP_07840705.1| DNA-dependent DNA polymerase family X [Staphylococcus caprae C87]
 gi|313653490|gb|EFS17247.1| DNA-dependent DNA polymerase family X [Staphylococcus caprae C87]
          Length = 570

 Score = 41.7 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+  +++   A     + ITD 
Sbjct: 337 HMHTTYS--DGANSIREMVEANIAKGYKFMVITDH 369


>gi|327482456|gb|AEA85766.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 350

 Score = 41.7 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
           L  I G+  + A  I+    +KP+  L D   R+ 
Sbjct: 236 LQTIAGIDDSLAEAIVRERQNKPYTDLADANQRIG 270


>gi|158521025|ref|YP_001528895.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Desulfococcus oleovorans Hxd3]
 gi|158509851|gb|ABW66818.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Desulfococcus oleovorans Hxd3]
          Length = 114

 Score = 41.7 bits (96), Expect = 0.67,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLE 883
           L A+ GVG   A+ I+E   A+  F S+E      + K +  ++LE
Sbjct: 59  LTALTGVGKEIAQRIIEYREANGAFKSVEQLQ---NVKGIGAKILE 101


>gi|319764638|ref|YP_004128575.1| ATP-dependent DNA helicase recg [Alicycliphilus denitrificans BC]
 gi|317119199|gb|ADV01688.1| ATP-dependent DNA helicase RecG [Alicycliphilus denitrificans BC]
          Length = 705

 Score = 41.7 bits (96), Expect = 0.67,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 6/60 (10%)

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVS--KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            LR           +   G  +++   V +   Q +      R   VT  +     E  FF
Sbjct: 39   LRYEDETRITPIRSAREGETVQVEGTVTASEIQMRP----RRQLVVTLEDGTGSCELRFF 94


>gi|117618885|ref|YP_857972.1| ComEA protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117560292|gb|ABK37240.1| ComEA protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 106

 Score = 41.7 bits (96), Expect = 0.67,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLES 884
           L A+KG+G   A+ I++       F +++      D   +    LE+
Sbjct: 55  LTALKGIGEKKAQAIVDYREKQGKFTTVDQL---ADVSGIGPATLEA 98


>gi|307594672|ref|YP_003900989.1| hypothetical protein Vdis_0540 [Vulcanisaeta distributa DSM 14429]
 gi|307549873|gb|ADN49938.1| Protein of unknown function DUF655 [Vulcanisaeta distributa DSM
           14429]
          Length = 187

 Score = 41.7 bits (96), Expect = 0.69,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
           SL  ++G+G  T   I+E    KPF S ED  SRV          E L+
Sbjct: 126 SLELLRGIGKKTLWQILEERRKKPFQSFEDIKSRVGIDP------EKLI 168


>gi|260880904|ref|ZP_05403101.2| lysine--tRNA ligase [Mitsuokella multacida DSM 20544]
 gi|260849879|gb|EEX69886.1| lysine--tRNA ligase [Mitsuokella multacida DSM 20544]
          Length = 506

 Score = 41.7 bits (96), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/94 (12%), Positives = 30/94 (31%), Gaps = 15/94 (15%)

Query: 942  KFSVENSSVRFENEQ----RVLGFYFSGH--PLDVYKPILRKMGIKGYEESVATIRGNNI 995
                 N  ++   E+    R +G    GH   +  Y   +++     Y        G  +
Sbjct: 15   PVEDLNEMMKVRREKMEEFRAMGVPPFGHRYDVTDYAEPIKEK----YAHLEGDEEGGEV 70

Query: 996  RLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            R+A  +++ +           + T ++     + 
Sbjct: 71   RIAGRLMAIRGHGKAS-----FCTLNDRTGNIQV 99


>gi|150025089|ref|YP_001295915.1| ATP-dependent DNA helicase RecG [Flavobacterium psychrophilum
            JIP02/86]
 gi|149771630|emb|CAL43104.1| ATP-dependent DNA helicase RecG [Flavobacterium psychrophilum
            JIP02/86]
          Length = 701

 Score = 41.7 bits (96), Expect = 0.69,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 6/85 (7%)

Query: 949  SVRFENEQRVLGFYFSGHPLDVYKPI-LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
                  E   LG Y  G  ++ Y    L +       E   +     +++   V+  +  
Sbjct: 20   GDLLRKE---LGVYKYGDLINFYPNRYLDRTKYYKISELQNSS--AEVQIIGKVIHIKSV 74

Query: 1008 KTRKGSRIGWVTFSEPAKEYEANFF 1032
            +  KG      TF +   + E  +F
Sbjct: 75   EFAKGKSRLVATFIDDTGQMELVWF 99


>gi|288921169|ref|ZP_06415456.1| aspartyl-tRNA synthetase [Frankia sp. EUN1f]
 gi|288347426|gb|EFC81716.1| aspartyl-tRNA synthetase [Frankia sp. EUN1f]
          Length = 603

 Score = 41.7 bits (96), Expect = 0.69,   Method: Composition-based stats.
 Identities = 6/55 (10%), Positives = 16/55 (29%), Gaps = 4/55 (7%)

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             M      +      G  + +   V  ++Q     G  + +V   + +   +   
Sbjct: 14   AMRTHLCGDLRLDNAGQRVTVCGWVAHRRQH----GQSLMFVDLRDHSGLLQCVV 64


>gi|108757053|ref|YP_634709.1| competence protein comEA [Myxococcus xanthus DK 1622]
 gi|108460933|gb|ABF86118.1| competence protein comEA [Myxococcus xanthus DK 1622]
          Length = 116

 Score = 41.7 bits (96), Expect = 0.70,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCS 870
           L  + GVG   A+ I+E    +PF  +E+   
Sbjct: 42  LDLLPGVGEKAAQRIIEHRQKRPFKRVEELVR 73


>gi|148654262|ref|YP_001274467.1| phosphotransferase domain-containing protein [Roseiflexus sp. RS-1]
 gi|148566372|gb|ABQ88517.1| PHP C-terminal domain protein [Roseiflexus sp. RS-1]
          Length = 580

 Score = 41.7 bits (96), Expect = 0.70,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +HS++S  +G   +  + +   A     IAITD 
Sbjct: 345 LHMHSTWS--DGRADIRTMAEAARARGYSHIAITDH 378


>gi|330826895|ref|YP_004390198.1| ATP-dependent DNA helicase RecG [Alicycliphilus denitrificans K601]
 gi|329312267|gb|AEB86682.1| ATP-dependent DNA helicase RecG [Alicycliphilus denitrificans K601]
          Length = 705

 Score = 41.7 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 6/60 (10%)

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVS--KQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            LR           +   G  +++   V +   Q +      R   VT  +     E  FF
Sbjct: 39   LRYEDETRITPIRSAREGETVQVEGTVTASEIQMRP----RRQLVVTLEDGTGSCELRFF 94


>gi|329766404|ref|ZP_08257950.1| hypothetical protein Nlim_1755 [Candidatus Nitrosoarchaeum limnia
           SFB1]
 gi|329137173|gb|EGG41463.1| hypothetical protein Nlim_1755 [Candidatus Nitrosoarchaeum limnia
           SFB1]
          Length = 188

 Score = 41.7 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
           +L  I G+G T  + ++E    K F S  D   RV  K
Sbjct: 125 ALELIPGIGKTYMKTMIEEREKKKFQSYADLQERVGFK 162


>gi|304440493|ref|ZP_07400380.1| competence protein comEA [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370971|gb|EFM24590.1| competence protein comEA [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 193

 Score = 41.7 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
           L +I GVG+  A  I++   + PF+++ED     +   + ++  E
Sbjct: 143 LTSIPGVGSKMADKIIKYRQEHPFNTIEDLL---NITGIGKKKFE 184


>gi|298491829|ref|YP_003722006.1| PHP domain-containing protein ['Nostoc azollae' 0708]
 gi|298233747|gb|ADI64883.1| PHP domain protein ['Nostoc azollae' 0708]
          Length = 229

 Score = 41.7 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 8/52 (15%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          HL   SS    +G L  N ++++  +     +AITD +         Q A A
Sbjct: 35 HLHTVSS----DGRLQPNILMEQAISIGLKGLAITDHHGTGG----YQAASA 78


>gi|325969172|ref|YP_004245364.1| PHP C-terminal domain protein [Vulcanisaeta moutnovskia 768-28]
 gi|323708375|gb|ADY01862.1| PHP C-terminal domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 250

 Score = 41.7 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 9/93 (9%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI------ 67
           L  HS YS  +G     +++          ++ITD +    +L+  +   + G+      
Sbjct: 34  LHTHSIYS--DGRGDPRDVIKSALDRGIGLLSITDHDTFKGSLKALEFIRSNGLLHRNDF 91

Query: 68  QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
             I+G ++     D L +  +        P ++
Sbjct: 92  VFIVGNEVRTVDGDILVLCRE-YPGTDDTPKLI 123


>gi|303254423|ref|ZP_07340529.1| competence protein CelA [Streptococcus pneumoniae BS455]
 gi|302598590|gb|EFL65630.1| competence protein CelA [Streptococcus pneumoniae BS455]
          Length = 216

 Score = 41.7 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   A+  F S+++         +  + +E L
Sbjct: 165 LKQVKGLGGKRAQDIIDHREANGKFKSVDELKK---VSGIGGKTIEKL 209


>gi|257451454|ref|ZP_05616753.1| HisJ family histidinol phosphate phosphatase [Fusobacterium sp.
          3_1_5R]
 gi|317058034|ref|ZP_07922519.1| histidinol phosphate phosphatase HisJ family [Fusobacterium sp.
          3_1_5R]
 gi|313683710|gb|EFS20545.1| histidinol phosphate phosphatase HisJ family [Fusobacterium sp.
          3_1_5R]
          Length = 267

 Score = 41.7 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +HS +S  +   ++  +++   +     IAITD 
Sbjct: 7  HIHSEFS-GDSNQNIEELIEHCISIGLKEIAITDH 40


>gi|296129747|ref|YP_003636997.1| PHP domain protein [Cellulomonas flavigena DSM 20109]
 gi|296021562|gb|ADG74798.1| PHP domain protein [Cellulomonas flavigena DSM 20109]
          Length = 347

 Score = 41.7 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H+  S  +GA  +  ++       +  +A+TD 
Sbjct: 112 LHSHTEAS--DGAAPVQEMVLTALDLGRDYLAVTDH 145


>gi|225854458|ref|YP_002735970.1| competence protein [Streptococcus pneumoniae JJA]
 gi|225723600|gb|ACO19453.1| competence protein [Streptococcus pneumoniae JJA]
          Length = 216

 Score = 41.7 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   A+  F S+++         +  + +E L
Sbjct: 165 LKQVKGLGGKRAQDIIDHREANGKFKSVDELKK---VSGIGGKTIEKL 209


>gi|225175105|ref|ZP_03729101.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169281|gb|EEG78079.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Dethiobacter alkaliphilus AHT 1]
          Length = 192

 Score = 41.7 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L A+ G+G   A  I      + PF S+ED    V    +  + +ESL
Sbjct: 141 LEALPGIGPAKAAAISSYREENGPFRSVEDL---VQVSGIGVKTVESL 185


>gi|221231718|ref|YP_002510870.1| putative competence protein [Streptococcus pneumoniae ATCC 700669]
 gi|225858747|ref|YP_002740257.1| competence protein [Streptococcus pneumoniae 70585]
 gi|298229852|ref|ZP_06963533.1| competence protein [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254552|ref|ZP_06978138.1| competence protein [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503037|ref|YP_003724977.1| competence protein ComEA [Streptococcus pneumoniae TCH8431/19A]
 gi|220674178|emb|CAR68706.1| putative competence protein [Streptococcus pneumoniae ATCC 700669]
 gi|225720069|gb|ACO15923.1| competence protein [Streptococcus pneumoniae 70585]
 gi|298238632|gb|ADI69763.1| competence protein ComEA [Streptococcus pneumoniae TCH8431/19A]
          Length = 216

 Score = 41.7 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   A+  F S+++         +  + +E L
Sbjct: 165 LKQVKGLGGKRAQDIIDHREANGKFKSVDELKK---VSGIGGKTIEKL 209


>gi|194397453|ref|YP_002037588.1| competence protein ComEA [Streptococcus pneumoniae G54]
 gi|194357120|gb|ACF55568.1| competence protein (ComEA) [Streptococcus pneumoniae G54]
          Length = 216

 Score = 41.7 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   A+  F S+++         +  + +E L
Sbjct: 165 LKQVKGLGGKRAQDIIDHREANGKFKSVDELKK---VSGIGGKTIEKL 209


>gi|168485906|ref|ZP_02710414.1| competence protein [Streptococcus pneumoniae CDC1087-00]
 gi|183570977|gb|EDT91505.1| competence protein [Streptococcus pneumoniae CDC1087-00]
          Length = 216

 Score = 41.7 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   A+  F S+++         +  + +E L
Sbjct: 165 LKQVKGLGGKRAQDIIDHREANGKFKSVDELKK---VSGIGGKTIEKL 209


>gi|159905326|ref|YP_001548988.1| DNA polymerase II small subunit [Methanococcus maripaludis C6]
 gi|159886819|gb|ABX01756.1| DNA-directed DNA polymerase [Methanococcus maripaludis C6]
          Length = 584

 Score = 41.7 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 6/60 (10%), Positives = 20/60 (33%), Gaps = 7/60 (11%)

Query: 971  YKPILR---KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             + I+    +       +     + N + +A +V       T+ G ++  +   +    +
Sbjct: 202  LRKIIELKVQKKAYPLNQLFRRKKENEVFIAGIVSDVN--STKNGHKM--IELEDENGTF 257


>gi|150402929|ref|YP_001330223.1| DNA polymerase II small subunit [Methanococcus maripaludis C7]
 gi|150033959|gb|ABR66072.1| DNA-directed DNA polymerase [Methanococcus maripaludis C7]
          Length = 578

 Score = 41.7 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 6/60 (10%), Positives = 20/60 (33%), Gaps = 7/60 (11%)

Query: 971  YKPILR---KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             + I+    +       +     + N + +A +V       T+ G ++  +   +    +
Sbjct: 196  LRKIIELKVQKKAYPLNQLFRRKKENEVFIAGIVSDVN--STKNGHKM--IELEDENGTF 251


>gi|148992911|ref|ZP_01822530.1| competence protein CelA [Streptococcus pneumoniae SP9-BS68]
 gi|168490227|ref|ZP_02714426.1| competence protein [Streptococcus pneumoniae SP195]
 gi|147928363|gb|EDK79379.1| competence protein CelA [Streptococcus pneumoniae SP9-BS68]
 gi|183571424|gb|EDT91952.1| competence protein [Streptococcus pneumoniae SP195]
 gi|332073288|gb|EGI83767.1| comEA family protein [Streptococcus pneumoniae GA17570]
          Length = 216

 Score = 41.7 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   A+  F S+++         +  + +E L
Sbjct: 165 LKQVKGLGGKRAQDIIDHREANGKFKSVDELKK---VSGIGGKTIEKL 209


>gi|148988394|ref|ZP_01819841.1| competence protein CelA [Streptococcus pneumoniae SP6-BS73]
 gi|169833773|ref|YP_001694398.1| competence protein [Streptococcus pneumoniae Hungary19A-6]
 gi|225861158|ref|YP_002742667.1| competence protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|147926075|gb|EDK77149.1| competence protein CelA [Streptococcus pneumoniae SP6-BS73]
 gi|168996275|gb|ACA36887.1| competence protein [Streptococcus pneumoniae Hungary19A-6]
 gi|225727207|gb|ACO23058.1| competence protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|327389233|gb|EGE87578.1| comEA family protein [Streptococcus pneumoniae GA04375]
          Length = 216

 Score = 41.7 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   A+  F S+++         +  + +E L
Sbjct: 165 LKQVKGLGGKRAQDIIDHREANGKFKSVDELKK---VSGIGGKTIEKL 209


>gi|149006370|ref|ZP_01830082.1| competence protein CelA [Streptococcus pneumoniae SP18-BS74]
 gi|168494383|ref|ZP_02718526.1| competence protein [Streptococcus pneumoniae CDC3059-06]
 gi|147762147|gb|EDK69109.1| competence protein CelA [Streptococcus pneumoniae SP18-BS74]
 gi|183575677|gb|EDT96205.1| competence protein [Streptococcus pneumoniae CDC3059-06]
          Length = 216

 Score = 41.7 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   A+  F S+++         +  + +E L
Sbjct: 165 LKQVKGLGGKRAQDIIDHREANGKFKSVDELKK---VSGIGGKTIEKL 209


>gi|3211753|gb|AAC23741.1| competence protein [Streptococcus pneumoniae]
          Length = 216

 Score = 41.7 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   A+  F S+++         +  + +E L
Sbjct: 165 LKQVKGLGGKRAQDIIDHREANGKFKSVDELKK---VSGIGGKTIEKL 209


>gi|15902900|ref|NP_358450.1| competence protein CelA [Streptococcus pneumoniae R6]
 gi|116516340|ref|YP_816325.1| competence protein CelA [Streptococcus pneumoniae D39]
 gi|149002504|ref|ZP_01827438.1| competence protein CelA [Streptococcus pneumoniae SP14-BS69]
 gi|237650509|ref|ZP_04524761.1| competence protein [Streptococcus pneumoniae CCRI 1974]
 gi|237820823|ref|ZP_04596668.1| competence protein [Streptococcus pneumoniae CCRI 1974M2]
 gi|307127495|ref|YP_003879526.1| competence protein [Streptococcus pneumoniae 670-6B]
 gi|15458459|gb|AAK99660.1| Competence protein [Streptococcus pneumoniae R6]
 gi|116076916|gb|ABJ54636.1| competence protein CelA [Streptococcus pneumoniae D39]
 gi|147759441|gb|EDK66433.1| competence protein CelA [Streptococcus pneumoniae SP14-BS69]
 gi|306484557|gb|ADM91426.1| competence protein [Streptococcus pneumoniae 670-6B]
 gi|332075570|gb|EGI86038.1| comEA family protein [Streptococcus pneumoniae GA17545]
 gi|332076229|gb|EGI86695.1| comEA family protein [Streptococcus pneumoniae GA41301]
          Length = 216

 Score = 41.7 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   A+  F S+++         +  + +E L
Sbjct: 165 LKQVKGLGGKRAQDIIDHREANGKFKSVDELKK---VSGIGGKTIEKL 209


>gi|15900831|ref|NP_345435.1| competence protein CelA [Streptococcus pneumoniae TIGR4]
 gi|111658045|ref|ZP_01408747.1| hypothetical protein SpneT_02000778 [Streptococcus pneumoniae
           TIGR4]
 gi|149010400|ref|ZP_01831771.1| competence protein CelA [Streptococcus pneumoniae SP19-BS75]
 gi|182683900|ref|YP_001835647.1| competence protein CelA [Streptococcus pneumoniae CGSP14]
 gi|303259866|ref|ZP_07345841.1| competence protein CelA [Streptococcus pneumoniae SP-BS293]
 gi|303262280|ref|ZP_07348224.1| competence protein CelA [Streptococcus pneumoniae SP14-BS292]
 gi|303264702|ref|ZP_07350620.1| competence protein CelA [Streptococcus pneumoniae BS397]
 gi|303267231|ref|ZP_07353096.1| competence protein CelA [Streptococcus pneumoniae BS457]
 gi|303269517|ref|ZP_07355282.1| competence protein CelA [Streptococcus pneumoniae BS458]
 gi|14972428|gb|AAK75075.1| competence protein CelA [Streptococcus pneumoniae TIGR4]
 gi|147764881|gb|EDK71810.1| competence protein CelA [Streptococcus pneumoniae SP19-BS75]
 gi|182629234|gb|ACB90182.1| competence protein CelA [Streptococcus pneumoniae CGSP14]
 gi|302636603|gb|EFL67094.1| competence protein CelA [Streptococcus pneumoniae SP14-BS292]
 gi|302639071|gb|EFL69531.1| competence protein CelA [Streptococcus pneumoniae SP-BS293]
 gi|302640953|gb|EFL71335.1| competence protein CelA [Streptococcus pneumoniae BS458]
 gi|302643240|gb|EFL73522.1| competence protein CelA [Streptococcus pneumoniae BS457]
 gi|302645789|gb|EFL76018.1| competence protein CelA [Streptococcus pneumoniae BS397]
          Length = 216

 Score = 41.7 bits (96), Expect = 0.71,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++   A+  F S+++         +  + +E L
Sbjct: 165 LKQVKGLGGKRAQDIIDHREANGKFKSVDELKK---VSGIGGKTIEKL 209


>gi|319645714|ref|ZP_07999945.1| hypothetical protein HMPREF1012_00979 [Bacillus sp. BT1B_CT2]
 gi|317392261|gb|EFV73057.1| hypothetical protein HMPREF1012_00979 [Bacillus sp. BT1B_CT2]
          Length = 252

 Score = 41.7 bits (96), Expect = 0.72,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 92/238 (38%), Gaps = 28/238 (11%)

Query: 546 YRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLD-------------FLAQR 592
                +   +TQFNM   E  G +KFD L ++ L  ++ +LD                  
Sbjct: 1   MMKTPNGAYITQFNMGDSEAMGSVKFDLLTIEALDKIRVTLDQLIENEEIQWQGSLKETY 60

Query: 593 GVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRP 652
              +   ++ ++D   + +      + +FQ  +    QA+  +QP  + +     SL R 
Sbjct: 61  NKYIHPDVLEYEDARLWEMAGNGEIMDLFQFSTEVGHQAVIKVQPKNLLEAAVTNSLMRL 120

Query: 653 GPIDNIVVYNNRKNGKEKIVSIHPLID-------------PMLKETQGVIIYQEQVMQIA 699
                    +     K  +   +  +                LK+  GV   QE VMQ+ 
Sbjct: 121 MSDGEEQPVDTYVKYKNNLSLWYEEMRKYGLSDDAIKVVEKHLKDIYGVADTQEVVMQMV 180

Query: 700 QL--LSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAK 755
               ++G+ + E++ LR+++ KK ++ + + ++ F     + G S  +   ++ +  K
Sbjct: 181 MDKEIAGFDIKESNYLRKSIAKKKEDVLKEVQKLFFKKGKEIGASDNLLNYVWNVQFK 238


>gi|309775930|ref|ZP_07670922.1| putative PHP domain N- region family protein [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308916212|gb|EFP61960.1| putative PHP domain N- region family protein [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 273

 Score = 41.7 bits (96), Expect = 0.72,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ-PII- 71
           L +HSS S  + +L + +I+          I+ITD +         ++     +   +I 
Sbjct: 6   LHIHSSCS--DSSLDVAHIIALAREQHMQTISITDHDTFA----AYKQLKHKELPCTVIK 59

Query: 72  GCQLDIDMQDNLKMTN-QGKTPFPTVPSIVLLVS 104
           G ++    Q   +  +  G       P +  L  
Sbjct: 60  GIEISAYDQAAKRQVHILGYGFGEQTPHVDALCE 93


>gi|258621659|ref|ZP_05716690.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|262171791|ref|ZP_06039469.1| PHP family hydrolase [Vibrio mimicus MB-451]
 gi|258585890|gb|EEW10608.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|261892867|gb|EEY38853.1| PHP family hydrolase [Vibrio mimicus MB-451]
          Length = 290

 Score = 41.7 bits (96), Expect = 0.72,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++++  +     +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQQLIERAVSFNIDVLAITDHDTVAALSDARAYITEQQYPLQLVN 62

Query: 72 GCQLD 76
          G ++ 
Sbjct: 63 GIEIS 67


>gi|229821390|ref|YP_002882916.1| PHP domain protein [Beutenbergia cavernae DSM 12333]
 gi|229567303|gb|ACQ81154.1| PHP domain protein [Beutenbergia cavernae DSM 12333]
          Length = 280

 Score = 41.7 bits (96), Expect = 0.72,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  S  +G  +  +++   A      +A+TD +      E +      G+  + G 
Sbjct: 5  LHTHSRAS--DGTDAPADLMRAAADAGLDVVALTDHDTARGWGEAADAVPETGVVLVRGT 62

Query: 74 QLD 76
          ++ 
Sbjct: 63 EIS 65


>gi|227499307|ref|ZP_03929419.1| possible lysine--tRNA ligase [Anaerococcus tetradius ATCC 35098]
 gi|227218658|gb|EEI83892.1| possible lysine--tRNA ligase [Anaerococcus tetradius ATCC 35098]
          Length = 632

 Score = 41.7 bits (96), Expect = 0.72,   Method: Composition-based stats.
 Identities = 11/84 (13%), Positives = 30/84 (35%), Gaps = 13/84 (15%)

Query: 948  SSVRFENEQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQK 1007
               + E E +  G     H +  +K  +    I   ++      G N+R+A       + 
Sbjct: 14   KREKLE-ELKAQGLD--PHKVVNFKGRIPSKNI---KDDFEAYDGKNVRIAG------RI 61

Query: 1008 KTRKGS-RIGWVTFSEPAKEYEAN 1030
              ++G   + ++   + + + +  
Sbjct: 62   MAKRGHGNMSFMDIQDESGQIQIV 85


>gi|45357692|ref|NP_987249.1| hypothetical protein MMP0129 [Methanococcus maripaludis S2]
 gi|45047252|emb|CAF29685.1| Conserved Hypothetical Protein [Methanococcus maripaludis S2]
          Length = 218

 Score = 41.7 bits (96), Expect = 0.72,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ +S  +G L  + ++ + +  +  A+ ITD 
Sbjct: 6  HTHTVFS--DGELIPSELIRRASVLEHRAVGITDH 38


>gi|257466919|ref|ZP_05631230.1| HisJ family histidinol phosphate phosphatase [Fusobacterium
          gonidiaformans ATCC 25563]
 gi|315918065|ref|ZP_07914305.1| histidinol phosphate phosphatase HisJ family [Fusobacterium
          gonidiaformans ATCC 25563]
 gi|313691940|gb|EFS28775.1| histidinol phosphate phosphatase HisJ family [Fusobacterium
          gonidiaformans ATCC 25563]
          Length = 267

 Score = 41.7 bits (96), Expect = 0.73,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +HS +S  +   ++  +++   +     IAITD 
Sbjct: 7  HIHSEFS-GDSNQNIEELIEHCISIGLKEIAITDH 40


>gi|257051709|ref|YP_003129542.1| Protein of unknown function DUF655 [Halorhabdus utahensis DSM
           12940]
 gi|256690472|gb|ACV10809.1| Protein of unknown function DUF655 [Halorhabdus utahensis DSM
           12940]
          Length = 188

 Score = 41.7 bits (96), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
           SL  + G+G      I++    KPF+S E+   RVD     + VL
Sbjct: 121 SLNLLPGIGKKLRNGILDERKRKPFESFEELTERVDGLHNPKEVL 165


>gi|189219913|ref|YP_001941131.1| DNA polymerase IV fused to PHP phosphatase [Methylacidiphilum
           infernorum V4]
 gi|189186771|gb|ACD83956.1| DNA polymerase IV fused to PHP phosphatase [Methylacidiphilum
           infernorum V4]
          Length = 656

 Score = 41.7 bits (96), Expect = 0.73,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             H++ S  +G  SL  +           + I D 
Sbjct: 417 HCHTTES--DGRSSLEEMAKAAMDMGLEYLGIADH 449


>gi|257076451|ref|ZP_05570812.1| hypothetical protein Faci_05275 [Ferroplasma acidarmanus fer1]
          Length = 182

 Score = 41.7 bits (96), Expect = 0.73,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
           L  + G+G  +   +++     PF S ED   RV S    ++++
Sbjct: 118 LELLPGLGNKSMWSVLDERKKGPFKSFEDISERVKSVHNPKKMV 161


>gi|222151570|ref|YP_002560726.1| DNA-dependent DNA polymerase beta chain [Macrococcus caseolyticus
           JCSC5402]
 gi|222120695|dbj|BAH18030.1| DNA-dependent DNA polymerase beta chain [Macrococcus caseolyticus
           JCSC5402]
          Length = 569

 Score = 41.7 bits (96), Expect = 0.75,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN-NLF 53
            +H++YS  +GA +L  +++   A     + ITD + +L+
Sbjct: 340 HMHTTYS--DGAHTLEQMIEACIAKGYEYMMITDHSKSLY 377


>gi|150403051|ref|YP_001330345.1| hypothetical protein MmarC7_1128 [Methanococcus maripaludis C7]
 gi|150034081|gb|ABR66194.1| PHP domain protein [Methanococcus maripaludis C7]
          Length = 240

 Score = 41.7 bits (96), Expect = 0.76,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ +S  +G L  + ++ +    +  AI ITD 
Sbjct: 28 HTHTIFS--DGELIPSELVRRAIVLEHRAIGITDH 60


>gi|91775275|ref|YP_545031.1| competence protein ComEA helix-hairpin-helix region
           [Methylobacillus flagellatus KT]
 gi|91775419|ref|YP_545175.1| competence protein ComEA helix-hairpin-helix region
           [Methylobacillus flagellatus KT]
 gi|91709262|gb|ABE49190.1| Competence protein ComEA helix-hairpin-helix region
           [Methylobacillus flagellatus KT]
 gi|91709406|gb|ABE49334.1| Competence protein ComEA helix-hairpin-helix region
           [Methylobacillus flagellatus KT]
          Length = 99

 Score = 41.7 bits (96), Expect = 0.76,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L ++KG+G   A+ I++    +  F S++D     + K   ++ ++ L
Sbjct: 32  LESVKGIGPAKAQAIIDYRKANGSFKSVDDLD---NVKGFGKKSIDKL 76


>gi|261343644|ref|ZP_05971289.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Providencia rustigianii DSM 4541]
 gi|282568027|gb|EFB73562.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
          [Providencia rustigianii DSM 4541]
          Length = 290

 Score = 41.7 bits (96), Expect = 0.76,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
          L  H++ S  +G L+   ++++        ++ITD +     +E 
Sbjct: 14 LHSHTNAS--DGDLTPAELVERAIQMGVNILSITDHDTCDGLIEA 56


>gi|296159004|ref|ZP_06841832.1| PHP domain protein [Burkholderia sp. Ch1-1]
 gi|295890879|gb|EFG70669.1| PHP domain protein [Burkholderia sp. Ch1-1]
          Length = 276

 Score = 41.3 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G  +  ++  +  A      A+TD + L    E    A A G+  + G 
Sbjct: 5   LHCHS--TVSDGQFAPADVARRAHAGGVTLWALTDHDELGGQREAKSTAEALGMAYLSGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVL--LVSTAEG 108
           ++ +         +          S+++  L  T  G
Sbjct: 63  EISVTWASRT--VHIVGLGIDPTSSVLIDGLARTRNG 97


>gi|289644751|ref|ZP_06476809.1| PHP domain protein [Frankia symbiont of Datisca glomerata]
 gi|289505447|gb|EFD26488.1| PHP domain protein [Frankia symbiont of Datisca glomerata]
          Length = 307

 Score = 41.3 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS  S  +GAL    I  +        +AITD 
Sbjct: 17 LHTHSDRS--DGALPPAEIGRRYREAGYDFLAITDH 50


>gi|159026462|emb|CAO88974.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 227

 Score = 41.3 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 10/52 (19%)

Query: 13 HLQVH-SSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
          HL  H S     +G +S   ++ +        +AITD ++    +E  ++A 
Sbjct: 36 HLHTHCS-----DGQMSPQGLMRQALDIGLKGLAITDHHS----IEGYRQAQ 78


>gi|330831049|ref|YP_004394001.1| ComEA protein [Aeromonas veronii B565]
 gi|328806185|gb|AEB51384.1| ComEA protein [Aeromonas veronii B565]
          Length = 106

 Score = 41.3 bits (95), Expect = 0.78,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLES 884
           L ++KG+G   A+ I++       F S++      D   +    LE+
Sbjct: 55  LTSLKGIGDKKAQAIVDYREKQGKFTSVDQL---ADVNGIGPATLEA 98


>gi|260427278|ref|ZP_05781257.1| PHP C- domain protein [Citreicella sp. SE45]
 gi|260421770|gb|EEX15021.1| PHP C- domain protein [Citreicella sp. SE45]
          Length = 306

 Score = 41.3 bits (95), Expect = 0.78,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS  +L +G L+   +  + AA+    +A+TD 
Sbjct: 17 LHTHS--TLSDGCLAPEEVCRRYAAEGYDFLALTDH 50


>gi|332108547|gb|EGJ09771.1| hypothetical protein RBXJA2T_05548 [Rubrivivax benzoatilyticus JA2]
          Length = 104

 Score = 41.3 bits (95), Expect = 0.79,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
           L  +KG+G   +  I+EA     F S  D   RV 
Sbjct: 34  LETVKGIGPGLSAKILEARMAGAFKSWADMVDRVP 68


>gi|315425095|dbj|BAJ46767.1| DNA polymerase II small subunit [Candidatus Caldiarchaeum
            subterraneum]
 gi|315428039|dbj|BAJ49627.1| DNA polymerase II small subunit [Candidatus Caldiarchaeum
            subterraneum]
          Length = 492

 Score = 41.3 bits (95), Expect = 0.79,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 16/99 (16%)

Query: 938  ITLEKFSVENSSVRFE---NEQRVLGFYFSG-HPLDVYKPIL--RKMGIKGYEESVATIR 991
              LE  SV ++  R E    E R   ++ S  H   + K IL  R++      E  A   
Sbjct: 86   PRLETISVIDNDYRIEGDIAEFRS--YFLSRYH---LIKRILSKRRLEFTPVSEVPAIRD 140

Query: 992  GNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEAN 1030
            G    +A M++SK++     G+    +T  +P+ + E  
Sbjct: 141  GGETVVAVMILSKKEGP---GN--IKITCDDPSGQLEVV 174


>gi|268685847|ref|ZP_06152709.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae SK-93-1035]
 gi|268626131|gb|EEZ58531.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Neisseria
           gonorrhoeae SK-93-1035]
          Length = 277

 Score = 41.3 bits (95), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 1/85 (1%)

Query: 29  LNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQ 88
              ++     +    +A+TD ++     E   +A   G++ I G ++ +  +        
Sbjct: 16  PPEVVRLAHQNGCTLLALTDHDHTGGISEARAEADRLGLRLINGVEISVTWRGRTIHVVG 75

Query: 89  GKTPFPTVPSIVLLVSTAEG-YQRL 112
                       LL    +G  +RL
Sbjct: 76  LDFDEQDENLQNLLADVRKGRLKRL 100


>gi|55377171|ref|YP_135021.1| hypothetical protein rrnAC0258 [Haloarcula marismortui ATCC 43049]
 gi|55229896|gb|AAV45315.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 190

 Score = 41.3 bits (95), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
           L  + G+G      I++    KPF+S ED   RV      +  L
Sbjct: 121 LNLLPGIGKKLRNTILDERKRKPFESFEDLEKRVSGLHSPKETL 164


>gi|323474667|gb|ADX85273.1| PHP domain protein [Sulfolobus islandicus REY15A]
          Length = 219

 Score = 41.3 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 25/99 (25%)

Query: 14  LQVHSSYSLLEGALS--LNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI---- 67
           L VHS YS  +G       +I+    A     +AITD +             + G+    
Sbjct: 5   LHVHSRYS--DG--KYFPKDIIAYARARNI-YVAITDHDT------------SLGLNSVK 47

Query: 68  --QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS 104
             + I G ++  +    + + N   +P   +  +V    
Sbjct: 48  EEKVIPGQEVTTEYGHVVILCNFPPSPPNRIAELVDYAK 86


>gi|317151867|ref|YP_004119915.1| Tex-like protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942118|gb|ADU61169.1| Tex-like protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 732

 Score = 41.3 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 52/194 (26%), Gaps = 42/194 (21%)

Query: 839  LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRV--DSKKLNRRVLESLVFAGALDCFG 895
            L+ + G+G   A +I+       PF S      R     K+L  +  E    AG L   G
Sbjct: 511  LSHVSGLGPVLAANIVAHRDEHGPFPS-----RRALLKVKRLGPKAFEQ--AAGFLRVRG 563

Query: 896  YSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT---LEKFSVENSSVRF 952
               +          +  + + ++      ++   E             E   +       
Sbjct: 564  SDPLDASAVHPERYELVKRMARDAGQTVADLLGDEAARQRIIPEKYVSEDVGLPTLRDIL 623

Query: 953  EN------EQRVLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQ 1006
                    + R  GF                   +   +      G  +RL  +V +   
Sbjct: 624  AELARPGRDPRA-GFSV----FAF---------DENVSDIKDLREG--MRLPGIVTNV-- 665

Query: 1007 KKTRKGSRIGWVTF 1020
              T+ G    +V  
Sbjct: 666  --TKFG---AFVDV 674


>gi|302870410|ref|YP_003839047.1| PHP domain-containing protein [Micromonospora aurantiaca ATCC
           27029]
 gi|302573269|gb|ADL49471.1| PHP domain protein [Micromonospora aurantiaca ATCC 27029]
          Length = 356

 Score = 41.3 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             HS  S  +G   +  +           + +TD 
Sbjct: 107 HTHSDCS--DGGSPIEEMALAAVELGHEYMVLTDH 139


>gi|258626396|ref|ZP_05721243.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258581448|gb|EEW06350.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 290

 Score = 41.3 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++++  +     +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQQLIERAVSFNIDVLAITDHDTVAALSDARAYITEQQYPLQLVN 62

Query: 72 GCQLD 76
          G ++ 
Sbjct: 63 GIEIS 67


>gi|160916069|ref|ZP_02078276.1| hypothetical protein EUBDOL_02096 [Eubacterium dolichum DSM 3991]
 gi|158431793|gb|EDP10082.1| hypothetical protein EUBDOL_02096 [Eubacterium dolichum DSM 3991]
          Length = 485

 Score = 41.3 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 7/40 (17%)

Query: 14  LQVHSSYSLLEGAL---SLNNILDKIAADQQPAIAITDTN 50
           L +HS +S    A    ++  +    A +    I+ITD +
Sbjct: 198 LHLHSDFS----ANGEYNVEELFQLAAKNNMQTISITDLD 233


>gi|156740035|ref|YP_001430164.1| phosphotransferase domain-containing protein [Roseiflexus
           castenholzii DSM 13941]
 gi|156231363|gb|ABU56146.1| PHP domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 580

 Score = 41.3 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 20/93 (21%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--------LEFSQ----- 60
           L +HS++S  +G   +  + +         IAITD +             L   +     
Sbjct: 345 LHLHSTWS--DGRADIRTMAEAARTRGYSHIAITDHSAYMGMTHGLDAERLRAQRQEIAA 402

Query: 61  -----KACAAGIQPIIGCQLDIDMQDNLKMTNQ 88
                 A     + + G ++DI  + NL + + 
Sbjct: 403 LNAEYAARGIPFRILHGVEVDITPEGNLALPDD 435


>gi|89069391|ref|ZP_01156746.1| putative secreted protein [Oceanicola granulosus HTCC2516]
 gi|89045021|gb|EAR51099.1| putative secreted protein [Oceanicola granulosus HTCC2516]
          Length = 458

 Score = 41.3 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 2/38 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
             H+ +S  + A S   +           +A+TD N +
Sbjct: 140 HCHTFHS--DAAGSPETLHAAARQAGLDFLAVTDHNTV 175


>gi|256828523|ref|YP_003157251.1| PHP domain protein [Desulfomicrobium baculatum DSM 4028]
 gi|256577699|gb|ACU88835.1| PHP domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 290

 Score = 41.3 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 44 IAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82
          IA+TD + +    E        G++ I GC+L ++ +  
Sbjct: 34 IALTDHDTVIGLPEACAAGRELGLEVIGGCELSVEFERG 72


>gi|325479516|gb|EGC82612.1| lysine--tRNA ligase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 632

 Score = 41.3 bits (95), Expect = 0.82,   Method: Composition-based stats.
 Identities = 5/55 (9%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGS-RIGWVTFSEPAKEYEAN 1030
            ++  K  +++     G  +R+A       +   ++G   + ++   + + + +  
Sbjct: 37   RISSKEIKDNFDDYDGKEVRIAG------RIMAKRGHGNMSFMDIQDESGQIQIV 85


>gi|161528890|ref|YP_001582716.1| hypothetical protein Nmar_1382 [Nitrosopumilus maritimus SCM1]
 gi|160340191|gb|ABX13278.1| Protein of unknown function DUF655 [Nitrosopumilus maritimus SCM1]
          Length = 188

 Score = 41.3 bits (95), Expect = 0.82,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCF-GY 896
           +L  I G+G T  + ++E    K F+S ED   RV  K+  + + E +     +D   G 
Sbjct: 125 ALELIPGIGKTYMKTMLEEREKKLFESYEDLQERVGFKEPIKHITERI-----MDEITGE 179

Query: 897 SRMQLL 902
           SRM L 
Sbjct: 180 SRMNLF 185


>gi|10566927|dbj|BAB16040.1| similar to Staphylococcus aureus DNA polymerase III [Streptococcus
           equi subsp. zooepidemicus]
          Length = 135

 Score = 41.3 bits (95), Expect = 0.82,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 10/75 (13%)

Query: 58  FSQKAC-AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
           F ++A    GI           +Q N  +  +       +    + V    G + + +LV
Sbjct: 70  FLKEAREKHGI--------TNLLQLNTDLVAEDSYKKARIKHATIYVQNQLGLKNMFKLV 121

Query: 117 SRMYLLDQGKQSVRI 131
           S   +    +   RI
Sbjct: 122 SLSNVK-YFEGVPRI 135


>gi|291530565|emb|CBK96150.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Eubacterium siraeum 70/3]
 gi|291557841|emb|CBL34958.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Eubacterium siraeum V10Sc8a]
          Length = 271

 Score = 41.3 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 18/68 (26%)

Query: 22 LLEGALSLNNILDKIAADQQPAIAITDTNNL------------FS-----ALEFSQKACA 64
          + +G+L L   + +         AITD + L            +      A+EFS     
Sbjct: 1  MSDGSLGLEETIAQAKRYGIDYFAITDHDTLSSSSRAVVLGERYGVNVIPAVEFSTYDSK 60

Query: 65 AGIQP-II 71
           G +  II
Sbjct: 61 HGTKAHII 68


>gi|242398593|ref|YP_002994017.1| Predicted RNA-binding protein [Thermococcus sibiricus MM 739]
 gi|242264986|gb|ACS89668.1| Predicted RNA-binding protein [Thermococcus sibiricus MM 739]
          Length = 213

 Score = 41.3 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV-----DSKKLNRRVLESL 885
           SL  + G+G      I+E    +PF S +D   RV       K + +R+L+ L
Sbjct: 143 SLELLPGIGKKHMWDILEERQREPFKSFDDLKHRVKGLADPVKMIAKRILDEL 195


>gi|225175810|ref|ZP_03729803.1| PHP domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168734|gb|EEG77535.1| PHP domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 346

 Score = 41.3 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           +HSS+S  +GA S+  I  + +      I +TD +
Sbjct: 9  HIHSSHS--DGAQSIPEIAKEASQAGLDFIIVTDHD 42


>gi|315231635|ref|YP_004072071.1| Archaeal DNA polymerase II small subunit [Thermococcus barophilus MP]
 gi|315184663|gb|ADT84848.1| Archaeal DNA polymerase II small subunit [Thermococcus barophilus MP]
          Length = 677

 Score = 41.3 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 9/68 (13%)

Query: 968  LDVYKPILRKM----GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            L   + ILR+     G+    +         + +  +V SK++  T+KG    +    + 
Sbjct: 293  LKKLRRILRENPEVSGVIDIGKLSYINPEGEVTIIGLVNSKRE--TKKG--FIF-EVEDM 347

Query: 1024 AKEYEANF 1031
                +   
Sbjct: 348  TGIVKVFL 355


>gi|86606791|ref|YP_475554.1| phospholipase D/competence protein ComEA [Synechococcus sp.
           JA-3-3Ab]
 gi|86555333|gb|ABD00291.1| phospholipase D/competence protein ComEA helix-hairpin-helix domain
           protein [Synechococcus sp. JA-3-3Ab]
          Length = 587

 Score = 41.3 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  + G+G   A+ I+EA    PF SLED   RV  K +    +E L
Sbjct: 541 LQQLPGIGPALAQRIIEAR---PFSSLEDL-QRV--KGIGPARIEQL 581


>gi|312793904|ref|YP_004026827.1| histidinol phosphate phosphatase hisj family
          [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181044|gb|ADQ41214.1| histidinol phosphate phosphatase HisJ family
          [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 266

 Score = 41.3 bits (95), Expect = 0.84,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +HS++S  +  +S+ + + K        IA TD 
Sbjct: 5  HIHSNFS-SDSNMSMEDAVKKAIELNLDEIAFTDH 38


>gi|187927882|ref|YP_001898369.1| putative ComEA-related signal peptide protein [Ralstonia pickettii
           12J]
 gi|187724772|gb|ACD25937.1| putative ComEA-related signal peptide protein [Ralstonia pickettii
           12J]
          Length = 107

 Score = 41.3 bits (95), Expect = 0.84,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  + G+G   ++ I+E    + P+    DF +RV    +  + L  L
Sbjct: 32  ALETLSGIGPKRSKSIIEERTKNGPYKDAADFKARV--SGIGGKTLAKL 78


>gi|315655706|ref|ZP_07908604.1| PHP family metal-dependent phosphoesterase [Mobiluncus curtisii
          ATCC 51333]
 gi|315489770|gb|EFU79397.1| PHP family metal-dependent phosphoesterase [Mobiluncus curtisii
          ATCC 51333]
          Length = 292

 Score = 41.3 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 10/69 (14%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALE----FSQKACAAGIQP- 69
           VHS+  L +G  S  ++L+K  A     I   D +  F   E          + G++P 
Sbjct: 8  HVHSA--LSDGTDSPRDLLEKARAAGLDVIGAVDHDT-FDHWEPFRVAHAALMSTGVRPP 64

Query: 70 --IIGCQLD 76
            I+G ++ 
Sbjct: 65 AVILGTEIS 73


>gi|268324198|emb|CBH37786.1| conserved hypothetical protein, DUF655 family [uncultured archaeon]
          Length = 201

 Score = 41.3 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV-----DSKKLNRRVLE 883
           L  + G+G      I+E   + PF   E    RV       K + +R+ E
Sbjct: 137 LDLLPGIGKKLMWAILEERKEGPFSDFETLTKRVKGLHHPEKIIAKRIEE 186


>gi|315645942|ref|ZP_07899063.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Paenibacillus vortex V453]
 gi|315278703|gb|EFU42017.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Paenibacillus vortex V453]
          Length = 222

 Score = 41.3 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLE 883
           L  + G+G   A+ I++      PF S+ D    ++ K +  ++LE
Sbjct: 172 LMELPGIGEAKAQAIIDYRKQFGPFRSIADL---MNVKGIGPKMLE 214


>gi|307151063|ref|YP_003886447.1| helix-hairpin-helix motif protein [Cyanothece sp. PCC 7822]
 gi|306981291|gb|ADN13172.1| helix-hairpin-helix motif protein [Cyanothece sp. PCC 7822]
          Length = 538

 Score = 41.3 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
           L  + G+GT+ A+ I++   +KPF SLED   RV   +  +
Sbjct: 489 LETLPGIGTSLAKKILKTRQEKPFTSLEDL-QRVPGIRQGK 528


>gi|124023196|ref|YP_001017503.1| metal-dependent phosphoesterase [Prochlorococcus marinus str. MIT
          9303]
 gi|123963482|gb|ABM78238.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Prochlorococcus marinus str. MIT 9303]
          Length = 218

 Score = 41.3 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
            H+  S  +G+L    ++ + +      IA+TD ++
Sbjct: 27 HCHTICS--DGSLEPELLIAQASERGLQHIAVTDHHS 61


>gi|227827615|ref|YP_002829395.1| PHP domain protein [Sulfolobus islandicus M.14.25]
 gi|229584819|ref|YP_002843321.1| PHP domain protein [Sulfolobus islandicus M.16.27]
 gi|238619772|ref|YP_002914598.1| PHP domain protein [Sulfolobus islandicus M.16.4]
 gi|227459411|gb|ACP38097.1| PHP domain protein [Sulfolobus islandicus M.14.25]
 gi|228019869|gb|ACP55276.1| PHP domain protein [Sulfolobus islandicus M.16.27]
 gi|238380842|gb|ACR41930.1| PHP domain protein [Sulfolobus islandicus M.16.4]
 gi|323477399|gb|ADX82637.1| PHP domain protein [Sulfolobus islandicus HVE10/4]
          Length = 219

 Score = 41.3 bits (95), Expect = 0.87,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 25/99 (25%)

Query: 14  LQVHSSYSLLEGALS--LNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI---- 67
           L VHS YS  +G       +I+    A     +AITD +             + G+    
Sbjct: 5   LHVHSRYS--DG--KYFPKDIIAYARARNI-YVAITDHDT------------SLGLNSVK 47

Query: 68  --QPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVS 104
             + I G ++  +    + + N   +P   +  +V    
Sbjct: 48  EEKVIPGQEVTTEYGHVVILCNFPPSPPNRIAELVDYAK 86


>gi|222054249|ref|YP_002536611.1| PHP domain protein [Geobacter sp. FRC-32]
 gi|221563538|gb|ACM19510.1| PHP domain protein [Geobacter sp. FRC-32]
          Length = 579

 Score = 41.3 bits (95), Expect = 0.87,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VHS +S  +G  SL+ +           IA+TD 
Sbjct: 341 LHVHSRWS--DGMHSLDKMAAAARKRGLAYIALTDH 374


>gi|149370699|ref|ZP_01890388.1| ATP-dependent DNA helicase [unidentified eubacterium SCB49]
 gi|149356250|gb|EDM44807.1| ATP-dependent DNA helicase [unidentified eubacterium SCB49]
          Length = 701

 Score = 41.3 bits (95), Expect = 0.87,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            L +      +E        ++++   +   +  + ++G R+   TF +     E  +F
Sbjct: 45   LDRTKFYKIQELQ--RNNADVQIIGKITHIKMVEQKRGKRLV-ATFRDETGVMELIWF 99


>gi|189423674|ref|YP_001950851.1| glycosyl transferase group 1 [Geobacter lovleyi SZ]
 gi|189419933|gb|ACD94331.1| glycosyl transferase group 1 [Geobacter lovleyi SZ]
          Length = 819

 Score = 41.3 bits (95), Expect = 0.88,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 12/56 (21%)

Query: 14 LQVHSSYS-------LL-----EGALSLNNILDKIAADQQPAIAITDTNNLFSALE 57
          L VHSSYS       +      E   S   +     A     + ITD N +  ALE
Sbjct: 10 LHVHSSYSNKPTYWAMRKFNCPESYTSPRQLYQTALARGMHYVTITDHNAIGGALE 65


>gi|292656865|ref|YP_003536762.1| putative RNA-binding protein [Haloferax volcanii DS2]
 gi|291370661|gb|ADE02888.1| Predicted RNA-binding protein [Haloferax volcanii DS2]
          Length = 197

 Score = 41.3 bits (95), Expect = 0.89,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVL 882
           L  + G+G      I+E+     PF+S ED  +RV      + V+
Sbjct: 129 LNLLPGIGKKLRDKILESRKRQGPFESFEDLEARVSGLHRPKEVI 173


>gi|260588006|ref|ZP_05853919.1| putative isoleucyl-tRNA synthetase [Blautia hansenii DSM 20583]
 gi|331082424|ref|ZP_08331550.1| hypothetical protein HMPREF0992_00474 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541533|gb|EEX22102.1| putative isoleucyl-tRNA synthetase [Blautia hansenii DSM 20583]
 gi|330400910|gb|EGG80511.1| hypothetical protein HMPREF0992_00474 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 274

 Score = 41.3 bits (95), Expect = 0.89,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 64/199 (32%), Gaps = 39/199 (19%)

Query: 15  QVHS-SYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
             H+   S+ +G + +   +  + A     + +TD ++ +    + +K     I+   G 
Sbjct: 6   HCHTKEGSI-DGKVPIEEYISMLKAQGFGGMLVTDHDS-YGGYRYWKK----NIK---G- 55

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLL-VSTAEGYQRLIELVSRMYLLDQGKQSVRIC 132
                  ++  +    +        I+++     +   RL+EL               I 
Sbjct: 56  ----KKHEDFVVLKGIEYDTLDAGHIIVIMPENIK--LRLLEL------RG-------IP 96

Query: 133 LSWLQEI-GTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
           +  L  I    G I+      G    +F         K       +  +  ++ +     
Sbjct: 97  VQMLIPIVHNYGGILGPAHPCGEKFMSFMN------AKAYERNPDILKEFDFMEIFNACE 150

Query: 192 YDRYRESQVVQLAYTHELP 210
             +    + V++A  ++LP
Sbjct: 151 P-QEVNDRAVKIAEKYDLP 168


>gi|157364326|ref|YP_001471093.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Thermotoga lettingae TMO]
 gi|157314930|gb|ABV34029.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotoga lettingae TMO]
          Length = 180

 Score = 41.3 bits (95), Expect = 0.89,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLV 886
           L  I G+G   AR I++    + PF S+ED     +   + R   E + 
Sbjct: 60  LLEIPGIGPAKARSILDYRESNGPFQSIEDL---TNVSGIGRATAEKMA 105


>gi|171057665|ref|YP_001790014.1| hypothetical protein Lcho_0977 [Leptothrix cholodnii SP-6]
 gi|170775110|gb|ACB33249.1| conserved hypothetical protein [Leptothrix cholodnii SP-6]
          Length = 109

 Score = 41.3 bits (95), Expect = 0.90,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
           L A+KG+G   +  I++      F S +DF  RV
Sbjct: 31  LEAVKGIGPAMSGKILDERKKSDFKSWDDFIGRV 64


>gi|330507825|ref|YP_004384253.1| PHP domain [Methanosaeta concilii GP-6]
 gi|328928633|gb|AEB68435.1| PHP domain, putative [Methanosaeta concilii GP-6]
          Length = 203

 Score = 41.3 bits (95), Expect = 0.91,   Method: Composition-based stats.
 Identities = 7/30 (23%), Positives = 14/30 (46%)

Query: 28 SLNNILDKIAADQQPAIAITDTNNLFSALE 57
              +++     +   +A+TD N +  ALE
Sbjct: 2  KPERLVEHAKKKELDGLAVTDHNTIDGALE 31


>gi|296132729|ref|YP_003639976.1| PHP domain protein [Thermincola sp. JR]
 gi|296031307|gb|ADG82075.1| PHP domain protein [Thermincola potens JR]
          Length = 277

 Score = 41.3 bits (95), Expect = 0.91,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS--ALEFSQKACAAGIQPII 71
          L +H++ S  +G +S   ++D         IA  D  N     A++    A   G++ I 
Sbjct: 5  LHIHTTAS--DGNISPAEVIDLAVQAGLRTIAFADHENTAGYTAVK--DMAEGKGLEIIP 60

Query: 72 GCQL 75
            +L
Sbjct: 61 ALEL 64


>gi|312127261|ref|YP_003992135.1| histidinol phosphate phosphatase hisj family
          [Caldicellulosiruptor hydrothermalis 108]
 gi|311777280|gb|ADQ06766.1| histidinol phosphate phosphatase HisJ family
          [Caldicellulosiruptor hydrothermalis 108]
          Length = 266

 Score = 41.3 bits (95), Expect = 0.92,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +HS++S  +  +S+ + + K        IA TD 
Sbjct: 5  HIHSNFS-SDSNMSMEDAVKKAIELNLDEIAFTDH 38


>gi|262283172|ref|ZP_06060939.1| competence protein CelA [Streptococcus sp. 2_1_36FAA]
 gi|262261424|gb|EEY80123.1| competence protein CelA [Streptococcus sp. 2_1_36FAA]
          Length = 222

 Score = 41.3 bits (95), Expect = 0.92,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 842 IKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           I G+G   A+ I+    A+  F S++D     +   +  + LE L
Sbjct: 174 ISGIGQKRAQDIIAYREANGRFKSVDDLK---NVSGIGAKTLEKL 215


>gi|260438459|ref|ZP_05792275.1| histidinol-phosphatase [Butyrivibrio crossotus DSM 2876]
 gi|292809048|gb|EFF68253.1| histidinol-phosphatase [Butyrivibrio crossotus DSM 2876]
          Length = 268

 Score = 41.3 bits (95), Expect = 0.92,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           VH+ +S  +       ++ K  +     I  TD 
Sbjct: 6  HVHTKFS-SDCNSEPEELIKKAISLGMNEICFTDH 39


>gi|157149750|ref|YP_001450880.1| competence protein CelA [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157074544|gb|ABV09227.1| competence protein CelA [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 221

 Score = 41.3 bits (95), Expect = 0.92,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 842 IKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           I G+G   A+ I+    A+  F S++D     +   +  + LE L
Sbjct: 173 ISGIGQKRAQDIIAYREANGRFKSVDDLK---NVSGIGAKTLEKL 214


>gi|325977805|ref|YP_004287521.1| competence protein ComEA [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177733|emb|CBZ47777.1| competence protein ComEA [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 221

 Score = 41.3 bits (95), Expect = 0.94,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  I G+G   A+ I++   A+  F S++D     +   +  + LE L
Sbjct: 170 LQTISGIGAKRAQDIIDYRDANGGFSSVDDL---ANVSGIGEKTLEKL 214


>gi|312877399|ref|ZP_07737364.1| histidinol phosphate phosphatase HisJ family
          [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795873|gb|EFR12237.1| histidinol phosphate phosphatase HisJ family
          [Caldicellulosiruptor lactoaceticus 6A]
          Length = 266

 Score = 41.3 bits (95), Expect = 0.94,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +HS++S  +  +S+ + + K        IA TD 
Sbjct: 5  HIHSNFS-SDSNMSMEDAVKKAIELNLDEIAFTDH 38


>gi|306830922|ref|ZP_07464084.1| competence protein CelA [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426945|gb|EFM30055.1| competence protein CelA [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 221

 Score = 41.3 bits (95), Expect = 0.94,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  I G+G   A+ I++   A+  F S++D     +   +  + LE L
Sbjct: 170 LQTISGIGAKRAQDIIDYRDANGGFSSVDDL---ANVSGIGEKTLEKL 214


>gi|306833039|ref|ZP_07466171.1| competence protein CelA [Streptococcus bovis ATCC 700338]
 gi|304424938|gb|EFM28072.1| competence protein CelA [Streptococcus bovis ATCC 700338]
          Length = 221

 Score = 41.3 bits (95), Expect = 0.94,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  I G+G   A+ I++   A+  F S++D     +   +  + LE L
Sbjct: 170 LQTISGIGAKRAQDIIDYRDANGGFSSVDDL---ANVSGIGEKTLEKL 214


>gi|291165659|gb|EFE27708.1| PHP domain-containing protein [Filifactor alocis ATCC 35896]
          Length = 273

 Score = 41.3 bits (95), Expect = 0.94,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L +H+  ++ +G+ S+  I+ K   +    IAIT+ +
Sbjct: 7  LHMHT--TISDGSDSIQTIVQKCKQNGLTHIAITNHD 41


>gi|288904870|ref|YP_003430092.1| exogenous DNA-binding protein [Streptococcus gallolyticus UCN34]
 gi|288731596|emb|CBI13151.1| putative exogenous DNA-binding protein [Streptococcus gallolyticus
           UCN34]
          Length = 221

 Score = 41.3 bits (95), Expect = 0.94,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  I G+G   A+ I++   A+  F S++D     +   +  + LE L
Sbjct: 170 LQTISGIGAKRAQDIIDYRDANGGFSSVDDL---ANVSGIGEKTLEKL 214


>gi|73670680|ref|YP_306695.1| hypothetical protein Mbar_A3233 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397842|gb|AAZ72115.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 240

 Score = 41.3 bits (95), Expect = 0.94,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 18/44 (40%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
           L  + G+G      I++      F S +D   R+ S     +VL
Sbjct: 172 LDLLPGIGKKLMWSIIDERKKGDFKSFQDIRERIPSLHDPAKVL 215


>gi|305662786|ref|YP_003859074.1| PHP domain protein [Ignisphaera aggregans DSM 17230]
 gi|304377355|gb|ADM27194.1| PHP domain protein [Ignisphaera aggregans DSM 17230]
          Length = 335

 Score = 41.3 bits (95), Expect = 0.95,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 6/39 (15%)

Query: 14 LQVHSSYSLL--EGALSLNNILDKIAADQQPAIAITDTN 50
          L  H+    L  +G LS  N+++   +     IAITD  
Sbjct: 13 LHCHT----LNSDGLLSPENVVEFYRSRGYGVIAITDHG 47


>gi|119719270|ref|YP_919765.1| putative nucleotide binding protein [Thermofilum pendens Hrk 5]
 gi|119524390|gb|ABL77762.1| putative nucleotide binding protein [Thermofilum pendens Hrk 5]
          Length = 209

 Score = 41.3 bits (95), Expect = 0.95,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLN---RRVLESL 885
           L  +KG+G  T   I++    KPF+S ED  +R D   +     R+LE L
Sbjct: 129 LELLKGIGKRTLWKILDERRRKPFESFEDIKARADIDPVELIVERILEEL 178


>gi|302871532|ref|YP_003840168.1| histidinol phosphate phosphatase HisJ family
          [Caldicellulosiruptor obsidiansis OB47]
 gi|302574391|gb|ADL42182.1| histidinol phosphate phosphatase HisJ family
          [Caldicellulosiruptor obsidiansis OB47]
          Length = 266

 Score = 41.3 bits (95), Expect = 0.95,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +HS++S  +  +S+ + + K        IA TD 
Sbjct: 5  HIHSNFS-SDSNMSMEDAVKKAIELNLDEIAFTDH 38


>gi|222480531|ref|YP_002566768.1| PHP domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222453433|gb|ACM57698.1| PHP domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 308

 Score = 41.3 bits (95), Expect = 0.95,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 5/86 (5%)

Query: 15 QVHSS--YSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIG 72
           VHS   Y   +G   +  IL+  +     A+ ITD + +  +   ++ A   G+  I G
Sbjct: 11 HVHSDDSY---DGHEPVELILEHASEIGLDAVVITDHDVIGESKRAAEIADEYGLIGIPG 67

Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPS 98
           ++       L +  +   P      
Sbjct: 68 VEVSTAHGHLLAVGVERMPPRRRPYD 93


>gi|33865776|ref|NP_897335.1| hypothetical protein SYNW1242 [Synechococcus sp. WH 8102]
 gi|33632946|emb|CAE07757.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 215

 Score = 41.3 bits (95), Expect = 0.95,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
            H+  S  +G+L    ++ + +      +A+TD ++
Sbjct: 24 HCHTICS--DGSLEPLELIRQASERGLSHLAVTDHHS 58


>gi|323705030|ref|ZP_08116606.1| PHP domain protein [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535456|gb|EGB25231.1| PHP domain protein [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 243

 Score = 41.3 bits (95), Expect = 0.99,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 5/46 (10%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          +E    +     H+ +S  +G   + + +          IAITD  
Sbjct: 1  MEIFADY---HTHTVFSHGKGT--IEDNVKAAIKKGLKEIAITDHG 41


>gi|126658635|ref|ZP_01729781.1| PHP-like protein [Cyanothece sp. CCY0110]
 gi|126620072|gb|EAZ90795.1| PHP-like protein [Cyanothece sp. CCY0110]
          Length = 230

 Score = 41.3 bits (95), Expect = 0.99,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC 63
           +H+  S  +G L+   ++ +        +AITD ++    +E  Q A 
Sbjct: 36 HMHTICS--DGQLTPEQLITQATQIGLKGLAITDHHS----VEGYQIAQ 78


>gi|225868912|ref|YP_002744860.1| competence protein [Streptococcus equi subsp. zooepidemicus]
 gi|225702188|emb|CAW99904.1| putative competence protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 226

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
           L +I G+G   A+ I++       F SLED         +  + LE L
Sbjct: 175 LQSIPGIGAKRAQDIIDVRESLGGFKSLEDLRK---VSGIGAKTLEKL 219


>gi|242309633|ref|ZP_04808788.1| competence protein ComEA [Helicobacter pullorum MIT 98-5489]
 gi|239523634|gb|EEQ63500.1| competence protein ComEA [Helicobacter pullorum MIT 98-5489]
          Length = 94

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
           L +IKG+G   A+ I++     P  S++D     + K    +++E
Sbjct: 42  LMSIKGIGEAKAQAIIDYREKTPLKSIDDLK---NIKGFGPKIIE 83


>gi|170077174|ref|YP_001733812.1| PHP family metal-dependent phosphoesterase [Synechococcus sp. PCC
          7002]
 gi|169884843|gb|ACA98556.1| metal-dependent phosphoesterases (PHP family), putative
          [Synechococcus sp. PCC 7002]
          Length = 230

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           +HS  S  +G L+   I+D+  A      AITD + +        +A + 
Sbjct: 36 HMHSVCS--DGQLTPTEIVDQAIAIGLKGFAITDHHTIHG----YHQAQSY 80


>gi|186682905|ref|YP_001866101.1| hypothetical protein Npun_R2604 [Nostoc punctiforme PCC 73102]
 gi|186465357|gb|ACC81158.1| hypothetical protein Npun_R2604 [Nostoc punctiforme PCC 73102]
          Length = 173

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKK 876
           ++AA++GV    A+ + E     PF SLED   RV   K
Sbjct: 100 AIAALEGVSIVVAKKVAEERVKSPFTSLEDLKLRVPLGK 138


>gi|163783747|ref|ZP_02178733.1| hypothetical protein HG1285_01583 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880993|gb|EDP74511.1| hypothetical protein HG1285_01583 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 346

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 10 SFVHLQVHSSYSLLEGALSLNNILDKIAAD-QQPAIAITDTNN 51
          S+V L +H+ +S  +      +++ +         + +TD +N
Sbjct: 46 SYV-LHIHTQFSY-DSLGKPEDVI-RARDRCGIDYVIVTDHDN 85


>gi|154493744|ref|ZP_02033064.1| hypothetical protein PARMER_03085 [Parabacteroides merdae ATCC
           43184]
 gi|154086494|gb|EDN85539.1| hypothetical protein PARMER_03085 [Parabacteroides merdae ATCC
           43184]
          Length = 606

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 23/78 (29%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT------------NNLFSALEFSQK- 61
            +H+ YS  +G ++    + +  A+   AI+ITD              N+        K 
Sbjct: 59  HLHTYYS--DGHVTPEMRVLEAWAEGLDAISITDHQPVPRSHTETKDCNVS-----YNKA 111

Query: 62  ---ACAAGIQPIIGCQLD 76
              A + GI  I G ++ 
Sbjct: 112 FPMAESKGITLIKGLEIT 129


>gi|313893381|ref|ZP_07826953.1| PHP domain protein [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442022|gb|EFR60442.1| PHP domain protein [Veillonella sp. oral taxon 158 str. F0412]
          Length = 275

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 45/169 (26%), Gaps = 40/169 (23%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AGIQP 69
            +HS YS  +G  +   +L          +A+TD +     ++  + A         I+ 
Sbjct: 6   HMHSVYS--DGIETPKELLRHALDCNVSMMALTDHDETDG-IKALRTAQQELDPHETIKI 62

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV--STAEGYQRLIELVSRMYLLDQGK- 126
           I GC+   D +D                 I+           + L E ++      + + 
Sbjct: 63  INGCEFSADYKDKSI-------------HILGYCFDENN---KELNEFITFFKRKREERV 106

Query: 127 ---------QSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQV 166
                    +   I    L +   +            I +         
Sbjct: 107 DEMIRRCNIEGYHITKEDLIKQFPD----TKAYGRPHIGKLLIDGGYAK 151


>gi|257784608|ref|YP_003179825.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Atopobium parvulum DSM 20469]
 gi|257473115|gb|ACV51234.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Atopobium parvulum DSM 20469]
          Length = 250

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 842 IKGVGTTTARHIMEAS-ADKPFDSLEDFCS 870
           +KGVG   A+ I+     + PF + ED   
Sbjct: 203 LKGVGEGLAKRIVADRQKNGPFKTTEDLMR 232


>gi|163857071|ref|YP_001631369.1| hypothetical protein Bpet2759 [Bordetella petrii DSM 12804]
 gi|163260799|emb|CAP43101.1| conserved hypothetical protein [Bordetella petrii]
          Length = 281

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS  ++ +G L    +  +  A+     A+TD +
Sbjct: 10 LHCHS--TVSDGVLPPAEVARRAHANGVDVWALTDHD 44


>gi|315503313|ref|YP_004082200.1| php domain protein [Micromonospora sp. L5]
 gi|315409932|gb|ADU08049.1| PHP domain protein [Micromonospora sp. L5]
          Length = 356

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             HS +S  +G   +  +           + +TD 
Sbjct: 107 HTHSDWS--DGGSPIEEMALAAVELGHEYMVLTDH 139


>gi|222153373|ref|YP_002562550.1| competence protein [Streptococcus uberis 0140J]
 gi|222114186|emb|CAR42718.1| putative competence protein [Streptococcus uberis 0140J]
          Length = 226

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883
           L  I G+G   A+ I++A  +   F S++D  +      + ++ LE
Sbjct: 175 LRKIPGIGEKRAQEILDARDSKGGFKSIDDLLT---ISGIGQKTLE 217


>gi|124028497|ref|YP_001013817.1| hypothetical protein Hbut_1658 [Hyperthermus butylicus DSM 5456]
 gi|123979191|gb|ABM81472.1| conserved archaeal protein [Hyperthermus butylicus DSM 5456]
          Length = 239

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 834 RIYY-SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV---DSKKLNRRVLESL 885
            + + SL  +  VG  T   I+E    +PF   ED  SRV     K L  R++E L
Sbjct: 138 TLRFHSLELLPSVGKKTVLRILEQREKEPFKDFEDIASRVGIDPVKILVERIVEEL 193


>gi|291531075|emb|CBK96660.1| histidinol phosphate phosphatase HisJ family [Eubacterium siraeum
          70/3]
          Length = 273

 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            HS+ S  +G+     ++ +         ++TD 
Sbjct: 11 HNHSNLSP-DGSNDPEEMVRRAIELGIRYYSLTDH 44


>gi|218781178|ref|YP_002432496.1| PHP domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218762562|gb|ACL05028.1| PHP domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 216

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 14 LQVHSS-YSLLEGALSLN--NILDKIAADQQPAIAITDTN 50
          L +H++ +S   G  +++   ++ +  A     IA+T+  
Sbjct: 5  LHIHTNRFS---GCSNIDPGEVIARAQAAGLDGIALTEHG 41


>gi|322369245|ref|ZP_08043810.1| PHP domain protein [Haladaptatus paucihalophilus DX253]
 gi|320550977|gb|EFW92626.1| PHP domain protein [Haladaptatus paucihalophilus DX253]
          Length = 579

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL 56
           L +H+++S  +G  ++  +++  A      IAI+D       +
Sbjct: 352 LHLHTNWS--DGNDTIAEMVEGAADFGHDYIAISDHATGSGMV 392


>gi|229515558|ref|ZP_04405017.1| hypothetical protein VCB_003216 [Vibrio cholerae TMA 21]
 gi|229347327|gb|EEO12287.1| hypothetical protein VCB_003216 [Vibrio cholerae TMA 21]
          Length = 320

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++D+  + +   +AITD + + +              +Q + 
Sbjct: 35 LHSHTNAS--DGRFTYQQLIDRAVSFEIDVLAITDHDTVAALADARAYIAQQLYPLQLVN 92

Query: 72 GCQLD 76
          G ++ 
Sbjct: 93 GIEIS 97


>gi|134046702|ref|YP_001098187.1| DNA polymerase II small subunit [Methanococcus maripaludis C5]
 gi|132664327|gb|ABO35973.1| DNA polymerase II small subunit [Methanococcus maripaludis C5]
          Length = 583

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 6/60 (10%), Positives = 20/60 (33%), Gaps = 7/60 (11%)

Query: 971  YKPILR---KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
             + I+    +       +     + N + +A +V       T+ G ++  +   +    +
Sbjct: 201  LRKIIELKVQKKAYPLNQLFRRKKENEVFIAGIVSDANT--TKNGHKM--IELEDENGTF 256


>gi|20090301|ref|NP_616376.1| hypothetical protein MA1442 [Methanosarcina acetivorans C2A]
 gi|19915301|gb|AAM04856.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 197

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 18/44 (40%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
           L  + G+G      I++      F S +D   R+ S     +V+
Sbjct: 124 LELLPGIGKKLMWSIIDERKKGEFKSFQDIRERIPSLHDPAKVI 167


>gi|325287658|ref|YP_004263448.1| ATP-dependent DNA helicase RecG [Cellulophaga lytica DSM 7489]
 gi|324323112|gb|ADY30577.1| ATP-dependent DNA helicase RecG [Cellulophaga lytica DSM 7489]
          Length = 701

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 34/88 (38%), Gaps = 7/88 (7%)

Query: 946  ENSSVRFENEQRVLGFYFSGHPLDVYKPI-LRKMGIKGYEESVATIRGNNIRLAAMVVSK 1004
             + +   ++E   LG Y     L+++    L K       +         +++   ++  
Sbjct: 18   PSRAQTLQSE---LGVYTYQDLLNLFPNRYLDKTQYYKISQLQ--RNSAEVQVIGKIIHL 72

Query: 1005 QQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            ++   ++G R+   TF +   + E  +F
Sbjct: 73   KEVGQKRGKRLV-ATFVDDTGKMELVWF 99


>gi|220933584|ref|YP_002512483.1| DNA uptake protein and related DNA-binding protein-like protein
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994894|gb|ACL71496.1| DNA uptake protein and related DNA-binding protein-like protein
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 136

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 840 AAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLES 884
           +AI GVG   A  I+    +  PF+S++        + + +  L +
Sbjct: 87  SAISGVGDGVAARIVAYREEHGPFESVDHLTR---VQGIGKATLAA 129


>gi|325107921|ref|YP_004268989.1| hypothetical protein Plabr_1355 [Planctomyces brasiliensis DSM
           5305]
 gi|324968189|gb|ADY58967.1| hypothetical protein Plabr_1355 [Planctomyces brasiliensis DSM
           5305]
          Length = 170

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 35/102 (34%), Gaps = 6/102 (5%)

Query: 788 LAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGD--NRIYYSLAAIKGV 845
             A   +    +        D  ++  + +  +         V D     +  L+ ++G+
Sbjct: 52  QHAVAIVCCLLLSWAVFRWADLSRWGREPIEIARLAKQEYAYVVDPNEATWIELSLLEGL 111

Query: 846 GTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESLV 886
           G T ++ I+E   +  PF   ED       + + ++ L    
Sbjct: 112 GETLSKRIVENREEHGPFRRAEDLLR---VRGIGKKTLARFA 150


>gi|293189174|ref|ZP_06607899.1| PHP domain protein [Actinomyces odontolyticus F0309]
 gi|292821912|gb|EFF80846.1| PHP domain protein [Actinomyces odontolyticus F0309]
          Length = 282

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 3/86 (3%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             HS+YS  +G  +   +L   A      IA+TD +      E +      G+  I G +
Sbjct: 8   HTHSAYS--DGTDTPAQLLAIAAQAGLDTIALTDHDTTIGWDEAAAAVADTGVSLIRGAE 65

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIV 100
           +       + +        P  P +V
Sbjct: 66  MS-CSSSGITVHLLAYLFDPASPGLV 90


>gi|291541528|emb|CBL14638.1| aspartyl-tRNA synthetase [Ruminococcus bromii L2-63]
          Length = 582

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 5/56 (8%), Positives = 15/56 (26%), Gaps = 5/56 (8%)

Query: 976  RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             +       E      G  +R+A  V + +         + ++   +     +   
Sbjct: 5    NEYRTVTCGELREENIGQQVRVAGWVENIRDHG-----GVMFLDIRDQYGVLQVVV 55


>gi|239906693|ref|YP_002953434.1| transcription accessory protein [Desulfovibrio magneticus RS-1]
 gi|239796559|dbj|BAH75548.1| transcription accessory protein [Desulfovibrio magneticus RS-1]
          Length = 713

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 12/105 (11%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNR---RVLESLVFAGALDCF 894
           L A+ G+G + A +I+     + PF S      R + +K+ R   +  E    AG L   
Sbjct: 492 LTAVSGLGPSLAANIVAHRKENGPFRS------RAELRKVKRLGPKAFEQ--AAGFLRLR 543

Query: 895 GYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKIT 939
           G   +               + K+      ++ A        +  
Sbjct: 544 GGPPLDATAVHPERYALVGRMAKDLGCAVTDLIAKASLREGIEPA 588


>gi|326421334|gb|ADZ73695.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Platanista gangetica]
          Length = 222

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 120 LMSVRGLTEKMAVSIVDYRREHGPFRSVEDLVR 152


>gi|326421332|gb|ADZ73694.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Kogia sima]
          Length = 222

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 120 LMSVRGLTEKMAVSIVDYRREHGPFRSVEDLVR 152


>gi|326421330|gb|ADZ73693.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Balaenoptera omurai]
          Length = 222

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 120 LMSVRGLTEKMAVSIVDYRREHGPFRSVEDLVR 152


>gi|326421318|gb|ADZ73687.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Delphinus capensis]
          Length = 222

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 120 LMSVRGLTEKMAVSIVDYRREHGPFRSVEDLVR 152


>gi|326421316|gb|ADZ73686.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Lipotes vexillifer]
          Length = 222

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 120 LMSVRGLTEKMAVSIVDYRREHGPFRSVEDLVR 152


>gi|326322020|gb|ADZ54010.1| endonuclease/exonuclease/phosphatase family domain containing 1
           [Mesoplodon densirostris]
 gi|326421314|gb|ADZ73685.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Neophocaena phocaenoides]
 gi|326421320|gb|ADZ73688.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Grampus griseus]
 gi|326421322|gb|ADZ73689.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Stenella attenuata]
 gi|326421324|gb|ADZ73690.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Tursiops aduncus]
 gi|326421326|gb|ADZ73691.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Stenella coeruleoalba]
 gi|326421328|gb|ADZ73692.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Sousa chinensis]
 gi|326421340|gb|ADZ73698.1| endonuclease/exonuclease/phosphatase family domain containing
           protein 1 [Delphinapterus leucas]
          Length = 222

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 120 LMSVRGLTEKMAVSIVDYRREHGPFRSVEDLVR 152


>gi|301766552|ref|XP_002918698.1| PREDICTED: endonuclease/exonuclease/phosphatase family
           domain-containing protein 1-like [Ailuropoda
           melanoleuca]
 gi|281339468|gb|EFB15052.1| hypothetical protein PANDA_007201 [Ailuropoda melanoleuca]
          Length = 569

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           L +++G+    A  I++      PF S+ED   
Sbjct: 147 LMSVRGLTEKMAVSIVDYRREHGPFRSVEDLVR 179


>gi|154509569|ref|ZP_02045211.1| hypothetical protein ACTODO_02101 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799203|gb|EDN81623.1| hypothetical protein ACTODO_02101 [Actinomyces odontolyticus ATCC
           17982]
          Length = 282

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 3/86 (3%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
             HS+YS  +G  +   +L   A      IA+TD +      E +      G+  I G +
Sbjct: 8   HTHSAYS--DGTDTPAQLLAIAAQAGLDTIALTDHDTTIGWDEAAAAVADTGVSLIRGAE 65

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIV 100
           +       + +        P  P +V
Sbjct: 66  MS-CSSSGITVHLLAYLFDPASPGLV 90


>gi|167752729|ref|ZP_02424856.1| hypothetical protein ALIPUT_00989 [Alistipes putredinis DSM
          17216]
 gi|167659798|gb|EDS03928.1| hypothetical protein ALIPUT_00989 [Alistipes putredinis DSM
          17216]
          Length = 767

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 21/91 (23%)

Query: 9  PSFVHLQVHS---------SYSLLEGALSLNNILDKIAADQQPA---IAITDTNNLFSAL 56
          P ++ L +H+         +Y        +  ++ +I      +   I++TD N +    
Sbjct: 3  PIYIDLHIHTSENANNLNTNY-------DIAELVGQIKKLNGDSPFMISLTDHNTIN--K 53

Query: 57 EFSQKACAAGIQPIIGCQLDIDMQDNLKMTN 87
              KA    +  IIG +L I  +   K  +
Sbjct: 54 SAYLKAQNLDLNLIIGVELHIQNRAEAKSYH 84


>gi|312891565|ref|ZP_07751078.1| PHP domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311295932|gb|EFQ73088.1| PHP domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 413

 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
            L VHS +S+     S+  I+    A     + ITD +N
Sbjct: 68  ELHVHSRHSIESSNNSVAKIIAFCKAVGVDYVCITDHDN 106


>gi|260578287|ref|ZP_05846203.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
           43734]
 gi|258603589|gb|EEW16850.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
           43734]
          Length = 289

 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
           L  I G+G  TA  I++    + PF S+E      D + +     E++  A
Sbjct: 239 LETISGIGPATAEAIIDWRESNGPFTSVEQLL---DVRGIGPAKFEAMRDA 286


>gi|68535643|ref|YP_250348.1| hypothetical protein jk0571 [Corynebacterium jeikeium K411]
 gi|68263242|emb|CAI36730.1| hypothetical protein jk0571 [Corynebacterium jeikeium K411]
          Length = 294

 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
           L  I G+G  TA  I++    + PF S+E      D + +     E++  A
Sbjct: 244 LETISGIGPATAEAIIDWRESNGPFTSVEQLL---DVRGIGPAKFEAMRDA 291


>gi|330836465|ref|YP_004411106.1| PHP domain-containing protein [Spirochaeta coccoides DSM 17374]
 gi|329748368|gb|AEC01724.1| PHP domain protein [Spirochaeta coccoides DSM 17374]
          Length = 262

 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           VH+ +S  +G  +++++L   A      +AITD 
Sbjct: 7  HVHTVFS--DGRNTISDVLRLAAQRNIGTLAITDH 39


>gi|257051419|ref|YP_003129252.1| PHP domain protein [Halorhabdus utahensis DSM 12940]
 gi|256690182|gb|ACV10519.1| PHP domain protein [Halorhabdus utahensis DSM 12940]
          Length = 257

 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
           VH++YS  +G   L  ++D         +   D  N+F
Sbjct: 5  HVHTTYS--DG-SFLPRMIDAAERAGLDGVGFADHCNVF 40


>gi|92114278|ref|YP_574206.1| competence protein ComEA helix-hairpin-helix region
           [Chromohalobacter salexigens DSM 3043]
 gi|91797368|gb|ABE59507.1| Competence protein ComEA helix-hairpin-helix region
           [Chromohalobacter salexigens DSM 3043]
          Length = 90

 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           LA + G+G   A+ I+E   A+ PF SLED   
Sbjct: 40  LAELPGIGEVKAQAIVEDREANGPFASLEDLTR 72


>gi|317969875|ref|ZP_07971265.1| metal-dependent phosphoesterase [Synechococcus sp. CB0205]
          Length = 215

 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL 56
            H++ S  +G+L+   +  +  +     +A+TD ++  + L
Sbjct: 24 HCHTTNS--DGSLAPEALAQQALSIGLEHLAVTDHHSTAAFL 63


>gi|261416927|ref|YP_003250610.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261373383|gb|ACX76128.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327751|gb|ADL26952.1| competence protein ComEA helix-hairpin-helix repeat region protein
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 164

 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
           L A+KGVG   A  I+E   A  PF    D         + ++ LE+++ +   D
Sbjct: 113 LCALKGVGPKLAEKIIEQRTASGPFKGPSDLKK---VHGIGKKKLENMLQSIIFD 164


>gi|330685727|gb|EGG97363.1| PHP domain protein [Staphylococcus epidermidis VCU121]
          Length = 570

 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 336 LHMHTTYS--DGAFSIRDMIEANIAKGYEFMVITDH 369


>gi|218133632|ref|ZP_03462436.1| hypothetical protein BACPEC_01501 [Bacteroides pectinophilus ATCC
          43243]
 gi|217991007|gb|EEC57013.1| hypothetical protein BACPEC_01501 [Bacteroides pectinophilus ATCC
          43243]
          Length = 271

 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 2/38 (5%)

Query: 15 QVHS-SYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
            H+   S L+   ++   + ++       + ITD N+
Sbjct: 6  HCHTKEGS-LDAFATMEEYVSRLMELGYDGMMITDHNS 42


>gi|116625961|ref|YP_828117.1| phosphotransferase domain-containing protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229123|gb|ABJ87832.1| PHP C-terminal domain protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 571

 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)

Query: 13  HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            L  HS+ S  +G  S+  +           I I+D 
Sbjct: 340 ELHAHSTSS--DGVHSIEQMAIAARERGYEYIGISDH 374


>gi|222529696|ref|YP_002573578.1| histidinol phosphate phosphatase HisJ family protein
          [Caldicellulosiruptor bescii DSM 6725]
 gi|222456543|gb|ACM60805.1| histidinol phosphate phosphatase HisJ family
          [Caldicellulosiruptor bescii DSM 6725]
          Length = 266

 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +HS++S  +  +S+ + + K        IA TD 
Sbjct: 5  HIHSNFS-SDSNMSMEDAVKKAIELNLEEIAFTDH 38


>gi|86610182|ref|YP_478944.1| phospholipase D/competence protein ComEA [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86558724|gb|ABD03681.1| phospholipase D/competence protein ComEA helix-hairpin-helix domain
           protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 591

 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  + G+G   A+ I+EA    PF SLED   RV+   +    +E L
Sbjct: 545 LEQLPGIGPALAQRIIEAR---PFSSLEDL-QRVN--GIGPARIEQL 585


>gi|298481951|ref|ZP_07000140.1| PHP domain-containing protein [Bacteroides sp. D22]
 gi|295087301|emb|CBK68824.1| Histidinol phosphatase and related hydrolases of the PHP family
           [Bacteroides xylanisolvens XB1A]
 gi|298271815|gb|EFI13387.1| PHP domain-containing protein [Bacteroides sp. D22]
          Length = 385

 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 19/72 (26%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT-----------NNLFSA-----LE 57
           L +H+ +S  +G LS +  + +   D   AI++TD              L  A     +E
Sbjct: 63  LHLHTYFS--DGHLSPSARVREAWLDGLDAISVTDHIEYHPADTDMIGYL-GATLPDGIE 119

Query: 58  FSQKACAAGIQP 69
                    ++P
Sbjct: 120 AHNVNKKTNVKP 131


>gi|291279182|ref|YP_003496017.1| hypothetical protein DEFDS_0783 [Deferribacter desulfuricans
          SSM1]
 gi|290753884|dbj|BAI80261.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 286

 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA-CAAGIQPIIG 72
          L +H+++S  +G  S   I  +I        +ITD N++   L+   K   A  I  I G
Sbjct: 5  LHIHTNFS-SDGEFSPLEIYKEIKKRGVSLFSITDHNSIDGVLDLYSKVDIADNISFIPG 63

Query: 73 CQLDIDMQDN 82
           +     +  
Sbjct: 64 VEFSCKFKGE 73


>gi|29345441|ref|NP_808944.1| hypothetical protein BT_0031 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29337333|gb|AAO75138.1| Polymerase and histidinol phosphatase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 354

 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 19/72 (26%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT-----------NNLFSA-----LE 57
           L +H+ +S  +G LS +  + +   D   AI++TD              L  A     +E
Sbjct: 32  LHLHTYFS--DGHLSPSARVREAWLDGLDAISVTDHIEYHPADTDMIGYL-GATLPDGIE 88

Query: 58  FSQKACAAGIQP 69
                    ++P
Sbjct: 89  AHNVNKKTNVKP 100


>gi|297578777|ref|ZP_06940705.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297536371|gb|EFH75204.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 290

 Score = 40.9 bits (94), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++D+  + +   +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQQLIDRAVSFEIDVLAITDHDTVAALADARAYIAQQQYPLQLVN 62

Query: 72 GCQLD 76
          G ++ 
Sbjct: 63 GIEIS 67


>gi|315127276|ref|YP_004069279.1| competence protein [Pseudoalteromonas sp. SM9913]
 gi|315015790|gb|ADT69128.1| competence protein [Pseudoalteromonas sp. SM9913]
          Length = 97

 Score = 40.9 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%)

Query: 842 IK--GVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           IK  GVG   A+ I++    +  F SLED       K + +++L  L
Sbjct: 48  IKLPGVGKKKAQAIIDYRETNGDFSSLEDLAK---VKGVGKKMLAKL 91


>gi|305663449|ref|YP_003859737.1| Protein of unknown function DUF655 [Ignisphaera aggregans DSM
           17230]
 gi|304378018|gb|ADM27857.1| Protein of unknown function DUF655 [Ignisphaera aggregans DSM
           17230]
          Length = 216

 Score = 40.9 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 834 RIYY-SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
            I   SL  I G+G  T   I+E    K FDS +D   R+      +  ++ ++
Sbjct: 122 NIRMHSLELIPGIGKKTLAMILEERKKKKFDSFDDIRKRLKINDPAKLFVDRII 175


>gi|257388712|ref|YP_003178485.1| hypothetical protein Hmuk_2672 [Halomicrobium mukohataei DSM 12286]
 gi|257171019|gb|ACV48778.1| Protein of unknown function DUF655 [Halomicrobium mukohataei DSM
           12286]
          Length = 190

 Score = 40.9 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV-----DSKKLNRRVLESLVFAGALDC 893
           L  + G+G      I++    KPF+S E+   RV       + L  R+LE L      D 
Sbjct: 122 LNLLPGIGKKLRNSILDERKRKPFESFEELEERVSGLHNPKEVLVERILEELSE----DD 177

Query: 894 FGYSR 898
             YSR
Sbjct: 178 LKYSR 182


>gi|254291996|ref|ZP_04962775.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|150422073|gb|EDN14041.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
          Length = 290

 Score = 40.9 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++D+  + +   +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQQLIDRAVSFEIDVLAITDHDTVAALADARAYIAQQQYPLQLVN 62

Query: 72 GCQLD 76
          G ++ 
Sbjct: 63 GIEIS 67


>gi|327311282|ref|YP_004338179.1| putative nucleotide binding protein [Thermoproteus uzoniensis
           768-20]
 gi|326947761|gb|AEA12867.1| putative nucleotide binding protein [Thermoproteus uzoniensis
           768-20]
          Length = 194

 Score = 40.9 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
           SL  ++G+G    + I+     KPF+S ED   RV    +
Sbjct: 126 SLELLQGIGKKKVQEILAERRKKPFESYEDIRKRVGVDPV 165


>gi|227495913|ref|ZP_03926224.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Actinomyces urogenitalis DSM 15434]
 gi|226834529|gb|EEH66912.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Actinomyces urogenitalis DSM 15434]
          Length = 253

 Score = 40.9 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  + G+G   A  I+       PF ++ED     D   + +  LE+L
Sbjct: 202 ALEDLPGIGPALAERIVSHRESHGPFATVEDLL---DVPGIGQAKLEAL 247


>gi|293398290|ref|ZP_06642482.1| DNA transport competence protein [Neisseria gonorrhoeae F62]
 gi|291611296|gb|EFF40379.1| DNA transport competence protein [Neisseria gonorrhoeae F62]
          Length = 141

 Score = 40.9 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 73  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDLIK---VKGIGPAVLAKLKDQASVGA 125


>gi|260439692|ref|ZP_05793508.1| ComEA-related protein [Neisseria gonorrhoeae DGI2]
 gi|291042936|ref|ZP_06568675.1| DNA transport competence protein [Neisseria gonorrhoeae DGI2]
 gi|291013143|gb|EFE05111.1| DNA transport competence protein [Neisseria gonorrhoeae DGI2]
 gi|317164625|gb|ADV08166.1| ComE1 [Neisseria gonorrhoeae TCDC-NG08107]
 gi|317164978|gb|ADV08519.1| ComE1 [Neisseria gonorrhoeae TCDC-NG08107]
 gi|317165078|gb|ADV08619.1| ComE1 [Neisseria gonorrhoeae TCDC-NG08107]
 gi|317165312|gb|ADV08853.1| ComE1 [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 131

 Score = 40.9 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 63  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDLIK---VKGIGPAVLAKLKDQASVGA 115


>gi|59801540|ref|YP_208252.1| ComE1 [Neisseria gonorrhoeae FA 1090]
 gi|240122228|ref|ZP_04735190.1| ComE1 [Neisseria gonorrhoeae PID24-1]
 gi|10505052|gb|AAG18334.1|AF268314_1 ComE [Neisseria gonorrhoeae]
 gi|10505056|gb|AAG18336.1|AF268315_1 ComE [Neisseria gonorrhoeae]
 gi|10505059|gb|AAG18337.1|AF268316_1 ComE [Neisseria gonorrhoeae]
 gi|10505061|gb|AAG18338.1|AF268317_1 ComE [Neisseria gonorrhoeae]
 gi|59718435|gb|AAW89840.1| DNA-binding competence protein 1 [Neisseria gonorrhoeae FA 1090]
          Length = 99

 Score = 40.9 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 31  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDLIK---VKGIGPAVLAKLKDQASVGA 83


>gi|146276112|ref|YP_001166271.1| hypothetical protein Rsph17025_0054 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554353|gb|ABP68966.1| hypothetical protein Rsph17025_0054 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 45

 Score = 40.9 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 5/47 (10%), Positives = 13/47 (27%), Gaps = 3/47 (6%)

Query: 929 HEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL 975
             +G     + L          +   +          HP+ + + +L
Sbjct: 2   DGEGIVEPAVALR---EMTLGEQVVEDYAAFRLTLRAHPMALLRHLL 45


>gi|302341581|ref|YP_003806110.1| Tex-like protein [Desulfarculus baarsii DSM 2075]
 gi|301638194|gb|ADK83516.1| Tex-like protein [Desulfarculus baarsii DSM 2075]
          Length = 776

 Score = 40.9 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALD 892
           L  + G+G + A++I+E   A+ PF S +D  +     +L  +  E    AG L 
Sbjct: 493 LGCVSGLGPSLAQNIVEHRAANGPFASRQDLLA---VPRLGPKAFEQ--AAGFLR 542


>gi|258517036|ref|YP_003193258.1| PHP domain-containing protein [Desulfotomaculum acetoxidans DSM
          771]
 gi|257780741|gb|ACV64635.1| PHP domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 245

 Score = 40.9 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
            H+ +S  +G  ++       AA     +AITD  
Sbjct: 8  HTHTVFS--DGLGTVRENAASAAARGLSEVAITDHG 41


>gi|302391193|ref|YP_003827013.1| PHP domain protein [Acetohalobium arabaticum DSM 5501]
 gi|302203270|gb|ADL11948.1| PHP domain protein [Acetohalobium arabaticum DSM 5501]
          Length = 571

 Score = 40.9 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VH+ +S  +G  ++  +           ++I D 
Sbjct: 341 LHVHTDWS--DGGNTIQEMALAARDRGYKFLSICDH 374


>gi|297154346|gb|ADI04058.1| PHP domain protein [Streptomyces bingchenggensis BCW-1]
          Length = 580

 Score = 40.9 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H++  L +G   L  ++           A+TD 
Sbjct: 342 LHTHTN--LTDGLEPLEEMIAAARRRGYAYYAVTDH 375


>gi|268323588|emb|CBH37176.1| conserved hypothetical protein, containing PHP domain [uncultured
           archaeon]
          Length = 577

 Score = 40.9 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VH+++S  +G  ++  +     +     IA+ D 
Sbjct: 341 LHVHTNWS--DGKNTIEEMALTAISSGYEYIAVADH 374


>gi|257063736|ref|YP_003143408.1| competence protein ComEA-like protein with helix-hairpin-helix
           repeat region [Slackia heliotrinireducens DSM 20476]
 gi|256791389|gb|ACV22059.1| competence protein ComEA-like protein with helix-hairpin-helix
           repeat region [Slackia heliotrinireducens DSM 20476]
          Length = 243

 Score = 40.9 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVD 873
           L  + G+G  TA  I++   A+ PF S+ED   RV 
Sbjct: 193 LQQLSGIGPATAEAIVKDREANGPFASVEDL-QRVS 227


>gi|212224794|ref|YP_002308030.1| DNA polymerase II small subunit [Thermococcus onnurineus NA1]
 gi|212009751|gb|ACJ17133.1| DNA polymerase II, small subunit [Thermococcus onnurineus NA1]
          Length = 701

 Score = 40.9 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 25/74 (33%), Gaps = 16/74 (21%)

Query: 969  DVYKPILRKMG-----------IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
            D ++  L+KM            +    +       +++ +  +V SK++  T KG    +
Sbjct: 309  DYFRSRLKKMRRILRENPEIGSVIDIAKLSYVRTDDDVTIIGLVNSKRE--TAKG--FMF 364

Query: 1018 VTFSEPAKEYEANF 1031
                +     +   
Sbjct: 365  -EVEDNTGIIKVFI 377


>gi|150020678|ref|YP_001306032.1| HisJ family histidinol phosphate phosphatase [Thermosipho
           melanesiensis BI429]
 gi|149793199|gb|ABR30647.1| histidinol phosphate phosphatase HisJ family [Thermosipho
           melanesiensis BI429]
          Length = 240

 Score = 40.9 bits (94), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 20/97 (20%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL----EF-------SQKAC 63
            VHS++S  +    ++ IL          I ITD    +  +    +F        ++  
Sbjct: 5   HVHSNFSA-DSQSKIDEILFFAKNLN---IIITDH---YEVVAEDEKFKFNVDVYIEEMK 57

Query: 64  AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
              +   +G +   D +  + +  +          +V
Sbjct: 58  KRELP--VGVEFGWDGKSKIDIELKKFDFVILSNHLV 92


>gi|187250678|ref|YP_001875160.1| putative metal-dependent phosphoesterase [Elusimicrobium minutum
          Pei191]
 gi|186970838|gb|ACC97823.1| putative metal-dependent phosphoesterase [Elusimicrobium minutum
          Pei191]
          Length = 270

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 26/82 (31%)

Query: 14 LQVHSSYSLLEGALSLNN------------ILDKIAADQQPAIAITDTNNLFSALEFSQK 61
          L  HS +S  +G    +                          A+TD + +    +  +K
Sbjct: 6  LHTHSKFS--DGTSKPSEVVVAAVKKGVKLY------------ALTDHDTIEGVPQAKEK 51

Query: 62 ACAAGIQPIIGCQLDIDMQDNL 83
          A +  +  + G ++  +  ++L
Sbjct: 52 AQSYKMNFVTGVEISTNEDEHL 73


>gi|41615122|ref|NP_963620.1| hypothetical protein NEQ334 [Nanoarchaeum equitans Kin4-M]
 gi|40068846|gb|AAR39181.1| NEQ334 [Nanoarchaeum equitans Kin4-M]
          Length = 172

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 8/102 (7%)

Query: 792 MTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK---GVGTT 848
             ++    +++  F ++  +  I+ +        V+F      I   L +++   G+G  
Sbjct: 57  YIIKRLKYDELTDFAKEQLEKAIEQIVKEREKEFVEFFNMAGPITLRLHSLELFEGIGKK 116

Query: 849 TARHIMEASADKPFDSLEDFCSRVDS-----KKLNRRVLESL 885
           T   I+     + F S ED   R+       K + +R+L+ L
Sbjct: 117 TVNEIISEREREKFKSFEDIEKRIPKLKNIVKIIAKRILDEL 158


>gi|254718288|ref|ZP_05180099.1| error-prone DNA polymerase [Brucella sp. 83/13]
 gi|265983249|ref|ZP_06095984.1| predicted protein [Brucella sp. 83/13]
 gi|264661841|gb|EEZ32102.1| predicted protein [Brucella sp. 83/13]
          Length = 97

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 2/19 (10%), Positives = 7/19 (36%)

Query: 1015 IGWVTFSEPAKEYEANFFP 1033
            + ++T  +         +P
Sbjct: 1    MVFLTIEDETGIANIVVWP 19


>gi|294495699|ref|YP_003542192.1| hypothetical protein Mmah_1029 [Methanohalophilus mahii DSM 5219]
 gi|292666698|gb|ADE36547.1| Protein of unknown function DUF655 [Methanohalophilus mahii DSM
           5219]
          Length = 198

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 18/44 (40%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
           L  + G+G      I++      F SLE+   RV      ++ +
Sbjct: 127 LELLPGIGKKLMWAIIDERKKGEFKSLEELHERVGGVHTPQKAI 170


>gi|86136075|ref|ZP_01054654.1| hypothetical protein MED193_18169 [Roseobacter sp. MED193]
 gi|85826949|gb|EAQ47145.1| hypothetical protein MED193_18169 [Roseobacter sp. MED193]
          Length = 306

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS+ S  +G L    +  +  ++    IA+TD 
Sbjct: 17 LHTHSNRS--DGVLDPAEVCRRYKSEGYDFIALTDH 50


>gi|254226703|ref|ZP_04920280.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|125620764|gb|EAZ49121.1| conserved hypothetical protein [Vibrio cholerae V51]
          Length = 290

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++D+  + +   +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQQLIDRAVSFEIDVLAITDHDTVAALADARAYIAQQQYPLQLVN 62

Query: 72 GCQLD 76
          G ++ 
Sbjct: 63 GIEIS 67


>gi|326423649|ref|NP_759034.2| DNA uptake protein [Vibrio vulnificus CMCP6]
 gi|319999001|gb|AAO08561.2| DNA uptake protein [Vibrio vulnificus CMCP6]
          Length = 100

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 841 AIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            +KGVG   A+ I++   A+ PF ++++       K + +  +E
Sbjct: 52  MLKGVGIKKAQQIVDFREANGPFKTVDELAQ---VKGIGKSTIE 92


>gi|320156964|ref|YP_004189343.1| DNA uptake protein [Vibrio vulnificus MO6-24/O]
 gi|319932276|gb|ADV87140.1| DNA uptake protein [Vibrio vulnificus MO6-24/O]
          Length = 100

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 841 AIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLE 883
            +KGVG   A+ I++   A+ PF ++++       K + +  +E
Sbjct: 52  MLKGVGIKKAQQIVDFREANGPFKTVDELAQ---VKGIGKSTIE 92


>gi|148654413|ref|YP_001274618.1| asparaginyl-tRNA synthetase [Roseiflexus sp. RS-1]
 gi|172048101|sp|A5UPW5|SYN_ROSS1 RecName: Full=Asparaginyl-tRNA synthetase; AltName:
            Full=Asparagine--tRNA ligase; Short=AsnRS
 gi|148566523|gb|ABQ88668.1| asparaginyl-tRNA synthetase [Roseiflexus sp. RS-1]
          Length = 440

 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 5/46 (10%)

Query: 987  VATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
            +A   G  + LA  VV     KT KG  + ++   + +   +   F
Sbjct: 12   IAHHNGEVVTLAGWVVH----KTEKGKLV-FIRLRDGSGVIQCVVF 52


>gi|315426907|dbj|BAJ48527.1| hypothetical protein HGMM_F09A08C35 [Candidatus Caldiarchaeum
            subterraneum]
 gi|315426962|dbj|BAJ48581.1| hypothetical protein HGMM_F04B03C47 [Candidatus Caldiarchaeum
            subterraneum]
          Length = 511

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 972  KPILRKMGIKGYEESVATIRG-NNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEA 1029
            + ++ +     Y +      G  NI +   VV K+   ++ G     +  S+     E 
Sbjct: 120  QELISEKDFGEYLQLKNITPGLQNINIVGRVVGKRTGVSQDGRAYIVLKLSDGTGSVEV 178


>gi|323140375|ref|ZP_08075305.1| comEA protein [Phascolarctobacterium sp. YIT 12067]
 gi|322415131|gb|EFY05920.1| comEA protein [Phascolarctobacterium sp. YIT 12067]
          Length = 218

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  + G+G   A+ I+E      F S +D   RV    + +  L  L
Sbjct: 168 LQQLPGIGPALAQRIVETRNSGRFTSADDLL-RVP--GIGKAKLAKL 211


>gi|71908080|ref|YP_285667.1| PHP, C-terminal [Dechloromonas aromatica RCB]
 gi|71847701|gb|AAZ47197.1| PHP, C-terminal [Dechloromonas aromatica RCB]
          Length = 295

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            HS  S  +G L    +  + A +     A+TD +++   +     A   G+  + G +
Sbjct: 25 HCHSIVS--DGLLPPEVVARRAAENGVDLWALTDHDDIGGLVTARTTAEEVGMSFVNGVE 82

Query: 75 LDIDMQD 81
          + I+ + 
Sbjct: 83 ISIEWRG 89


>gi|325183698|emb|CCA18157.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 571

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +HS+ S  +G L  ++++ + A +    +++TD + +    E  Q A   G+
Sbjct: 36 HMHSTCS--DGKLRPSHVIREAAGNGVTYMSLTDHDTMAGTNEALQTAQQLGV 86


>gi|259047457|ref|ZP_05737858.1| competence protein ComEA [Granulicatella adiacens ATCC 49175]
 gi|259035648|gb|EEW36903.1| competence protein ComEA [Granulicatella adiacens ATCC 49175]
          Length = 214

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
           L  +KG+G   A  I+E    +  F + E+    +  + + +++ ES
Sbjct: 163 LKTLKGIGEKKAEAIIEYRKQNGSFKNKEEL---MKVRGIGKKLYES 206


>gi|302384905|ref|YP_003820727.1| histidinol phosphate phosphatase HisJ family [Clostridium
          saccharolyticum WM1]
 gi|302195533|gb|ADL03104.1| histidinol phosphate phosphatase HisJ family [Clostridium
          saccharolyticum WM1]
          Length = 261

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           VH+ YS  +   S+  I+ +        IA+TD 
Sbjct: 6  HVHTYYSD-DSECSMEEIIQRAILLGFHEIAVTDH 39


>gi|229529735|ref|ZP_04419125.1| hypothetical protein VCG_002832 [Vibrio cholerae 12129(1)]
 gi|229333509|gb|EEN98995.1| hypothetical protein VCG_002832 [Vibrio cholerae 12129(1)]
 gi|327483878|gb|AEA78285.1| Predicted metal-dependent phosphoesterases (PHP family) [Vibrio
          cholerae LMA3894-4]
          Length = 290

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++D+  + +   +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQQLIDRAVSFEIDVLAITDHDTVAALADARAYIAQQQYPLQLVN 62

Query: 72 GCQLD 76
          G ++ 
Sbjct: 63 GIEIS 67


>gi|196248984|ref|ZP_03147684.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Geobacillus sp. G11MC16]
 gi|196211860|gb|EDY06619.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Geobacillus sp. G11MC16]
          Length = 203

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  + G+G   A+ I+    +  PF  +ED         +  + LE L
Sbjct: 152 LMQVPGIGPAKAKAIIAYREEHGPFQRVEDLLR---VNGIGEKTLEKL 196


>gi|183179582|ref|ZP_02957793.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|183012993|gb|EDT88293.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
          Length = 290

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++D+  + +   +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQQLIDRAVSFEIDVLAITDHDTVAALADARAYIAQQQYPLQLVN 62

Query: 72 GCQLD 76
          G ++ 
Sbjct: 63 GIEIS 67


>gi|138896090|ref|YP_001126543.1| late competence protein ComEA [Geobacillus thermodenitrificans
           NG80-2]
 gi|134267603|gb|ABO67798.1| Late competence protein ComEA [Geobacillus thermodenitrificans
           NG80-2]
          Length = 203

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  + G+G   A+ I+    +  PF  +ED         +  + LE L
Sbjct: 152 LMQVPGIGPAKAKAIIAYREEHGPFQRVEDLLR---VNGIGEKTLEKL 196


>gi|21228640|ref|NP_634562.1| hypothetical protein MM_2538 [Methanosarcina mazei Go1]
 gi|20907140|gb|AAM32234.1| Conserved hypothetical protein [Methanosarcina mazei Go1]
          Length = 243

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 18/44 (40%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVL 882
           L  + G+G      I++      F S +D   R+ S     +V+
Sbjct: 172 LELLPGIGKKLMWSIIDERKKGDFKSFQDIRERIPSLHDPAKVI 215


>gi|153826665|ref|ZP_01979332.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|149739527|gb|EDM53755.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
          Length = 290

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++D+  + +   +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQQLIDRAVSFEIDVLAITDHDTVAALADARAYIAQQQYPLQLVN 62

Query: 72 GCQLD 76
          G ++ 
Sbjct: 63 GIEIS 67


>gi|72382170|ref|YP_291525.1| phosphoesterase PHP, N-terminal [Prochlorococcus marinus str.
          NATL2A]
 gi|72002020|gb|AAZ57822.1| phosphoesterase PHP, N-terminal protein [Prochlorococcus marinus
          str. NATL2A]
          Length = 219

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +HS+YS  +G+LS   I ++         AITD ++    ++   +   
Sbjct: 28 HMHSTYS--DGSLSPIEIYNQALELNIDHYAITDHHS----VDAYLELVK 71


>gi|15641190|ref|NP_230822.1| hypothetical protein VC1177 [Vibrio cholerae O1 biovar El Tor
          str. N16961]
 gi|121587804|ref|ZP_01677563.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121728253|ref|ZP_01681286.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147674944|ref|YP_001216748.1| hypothetical protein VC0395_A0798 [Vibrio cholerae O395]
 gi|153819080|ref|ZP_01971747.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153823504|ref|ZP_01976171.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227081349|ref|YP_002809900.1| hypothetical protein VCM66_1132 [Vibrio cholerae M66-2]
 gi|229505229|ref|ZP_04394739.1| hypothetical protein VCF_000437 [Vibrio cholerae BX 330286]
 gi|229511101|ref|ZP_04400580.1| hypothetical protein VCE_002508 [Vibrio cholerae B33]
 gi|229518220|ref|ZP_04407664.1| hypothetical protein VCC_002244 [Vibrio cholerae RC9]
 gi|229608248|ref|YP_002878896.1| hypothetical protein VCD_003166 [Vibrio cholerae MJ-1236]
 gi|254848303|ref|ZP_05237653.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255745587|ref|ZP_05419535.1| hypothetical protein VCH_001939 [Vibrio cholera CIRS 101]
 gi|262158340|ref|ZP_06029456.1| PHP family hydrolase [Vibrio cholerae INDRE 91/1]
 gi|262169498|ref|ZP_06037190.1| PHP family hydrolase [Vibrio cholerae RC27]
 gi|298498721|ref|ZP_07008528.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9655653|gb|AAF94336.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
          str. N16961]
 gi|121547968|gb|EAX58049.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121629504|gb|EAX61930.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|126510363|gb|EAZ72957.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126518972|gb|EAZ76195.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|146316827|gb|ABQ21366.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|227009237|gb|ACP05449.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|227013094|gb|ACP09304.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229344935|gb|EEO09909.1| hypothetical protein VCC_002244 [Vibrio cholerae RC9]
 gi|229351066|gb|EEO16007.1| hypothetical protein VCE_002508 [Vibrio cholerae B33]
 gi|229357452|gb|EEO22369.1| hypothetical protein VCF_000437 [Vibrio cholerae BX 330286]
 gi|229370903|gb|ACQ61326.1| hypothetical protein VCD_003166 [Vibrio cholerae MJ-1236]
 gi|254844008|gb|EET22422.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255736662|gb|EET92059.1| hypothetical protein VCH_001939 [Vibrio cholera CIRS 101]
 gi|262022311|gb|EEY41020.1| PHP family hydrolase [Vibrio cholerae RC27]
 gi|262029781|gb|EEY48429.1| PHP family hydrolase [Vibrio cholerae INDRE 91/1]
 gi|297543054|gb|EFH79104.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 290

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++D+  + +   +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQQLIDRAVSFEIDVLAITDHDTVAALADARAYIAQQQYPLQLVN 62

Query: 72 GCQLD 76
          G ++ 
Sbjct: 63 GIEIS 67


>gi|294101039|ref|YP_003552897.1| PHP domain protein [Aminobacterium colombiense DSM 12261]
 gi|293616019|gb|ADE56173.1| PHP domain protein [Aminobacterium colombiense DSM 12261]
          Length = 205

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 12/100 (12%)

Query: 15  QVHSS-YSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKAC-AAGIQPIIG 72
            +HS  +S  +  L +   + K  +     I +TD  ++     F+++         ++G
Sbjct: 6   HLHSEEFS-SDSFLPIGEAIQKGKSMGLDGICVTDHESM-GMRSFARELSVKYDFLVLVG 63

Query: 73  CQLDIDMQD----NLKMTNQGKTPFPTVPSIVLLVSTAEG 108
            +L     D     L+   + K        +V      +G
Sbjct: 64  LELLTYEGDLLVFGLESVPEKKMHASDALELV----NRQG 99


>gi|284032291|ref|YP_003382222.1| aspartyl-tRNA synthetase [Kribbella flavida DSM 17836]
 gi|283811584|gb|ADB33423.1| aspartyl-tRNA synthetase [Kribbella flavida DSM 17836]
          Length = 596

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 5/54 (9%), Positives = 15/54 (27%), Gaps = 5/54 (9%)

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +         A   G  + LA  V  ++         + ++   + +   +   
Sbjct: 2    IRTHSAGSLRAEHTGQTVTLAGWVARRRDHG-----GVAFIDLRDASGTVQVVI 50


>gi|153215340|ref|ZP_01949953.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153829609|ref|ZP_01982276.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|229520394|ref|ZP_04409819.1| hypothetical protein VIF_000915 [Vibrio cholerae TM 11079-80]
 gi|124114783|gb|EAY33603.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|148874885|gb|EDL73020.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|229342492|gb|EEO07485.1| hypothetical protein VIF_000915 [Vibrio cholerae TM 11079-80]
          Length = 290

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++D+  + +   +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQQLIDRAVSFEIDVLAITDHDTVAALADARAYIAQQQYPLQLVN 62

Query: 72 GCQLD 76
          G ++ 
Sbjct: 63 GIEIS 67


>gi|145588694|ref|YP_001155291.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047100|gb|ABP33727.1| helix-hairpin-helix motif protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 142

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           L +IKG+G + A+ I+        F    D   RV  + +  + +E +V  G
Sbjct: 46  LESIKGIGPSKAKTIIAERLDGGHFQDANDLQKRV--RGIGMKSVEKMVDNG 95


>gi|317481697|ref|ZP_07940729.1| aspartyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916811|gb|EFV38201.1| aspartyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 599

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 5/56 (8%), Positives = 15/56 (26%), Gaps = 5/56 (8%)

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                    E    + G  + LA  V  ++         + ++   +     +   +
Sbjct: 5    AYRTHHATEVTEALVGQKVTLAGWVDRRRDHG-----GVAFIDLRDSTGLVQVVIY 55


>gi|312132334|ref|YP_003999673.1| asps [Bifidobacterium longum subsp. longum BBMN68]
 gi|322689660|ref|YP_004209394.1| aspartyl-tRNA synthase [Bifidobacterium longum subsp. infantis 157F]
 gi|311773817|gb|ADQ03305.1| AspS [Bifidobacterium longum subsp. longum BBMN68]
 gi|320460996|dbj|BAJ71616.1| aspartyl-tRNA synthase [Bifidobacterium longum subsp. infantis 157F]
          Length = 599

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 5/56 (8%), Positives = 15/56 (26%), Gaps = 5/56 (8%)

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                    E    + G  + LA  V  ++         + ++   +     +   +
Sbjct: 5    AYRTHHATEVTEALVGQKVTLAGWVDRRRDHG-----GVAFIDLRDSTGLVQVVIY 55


>gi|296454587|ref|YP_003661730.1| aspartyl-tRNA synthetase [Bifidobacterium longum subsp. longum
            JDM301]
 gi|296184018|gb|ADH00900.1| aspartyl-tRNA synthetase [Bifidobacterium longum subsp. longum
            JDM301]
          Length = 599

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 5/56 (8%), Positives = 15/56 (26%), Gaps = 5/56 (8%)

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                    E    + G  + LA  V  ++         + ++   +     +   +
Sbjct: 5    AYRTHHATEVTEALVGQKVTLAGWVDRRRDHG-----GVAFIDLRDSTGLVQVVIY 55


>gi|284166936|ref|YP_003405215.1| PHP domain protein [Haloterrigena turkmenica DSM 5511]
 gi|284016591|gb|ADB62542.1| PHP domain protein [Haloterrigena turkmenica DSM 5511]
          Length = 249

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 16/103 (15%)

Query: 1  LTQYLEKSPSFVHLQVHSS--YSLLEGALSLNNILDKIAADQQPAIAITDTN----NLFS 54
          +T  +  +  F    VHS   Y   +G   +  IL++ A      + ITD +    +L  
Sbjct: 1  MTTQIPLAIDF---HVHSDDSY---DGHEPIELILEQAADIGLDGVVITDHDEIGESL-- 52

Query: 55 ALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
              ++ A   G+  I G ++       L +  + +       
Sbjct: 53 --RAAELAPEYGLIGIPGVEVSTRHGHLLAIGVEERPDPGQPF 93


>gi|189438881|ref|YP_001953962.1| aspartyl-tRNA synthetase [Bifidobacterium longum DJO10A]
 gi|213691602|ref|YP_002322188.1| aspartyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC
            15697]
 gi|227546745|ref|ZP_03976794.1| aspartyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC
            55813]
 gi|239620721|ref|ZP_04663752.1| aspartyl-tRNA synthetase [Bifidobacterium longum subsp. infantis CCUG
            52486]
 gi|322691621|ref|YP_004221191.1| aspartyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM
            1217]
 gi|238692033|sp|B3DPM0|SYD_BIFLD RecName: Full=Aspartyl-tRNA synthetase; AltName: Full=Aspartate--tRNA
            ligase; Short=AspRS
 gi|254781717|sp|B7GPT0|SYD_BIFLI RecName: Full=Aspartyl-tRNA synthetase; AltName: Full=Aspartate--tRNA
            ligase; Short=AspRS
 gi|189427316|gb|ACD97464.1| Aspartyl-tRNA synthetase [Bifidobacterium longum DJO10A]
 gi|213523063|gb|ACJ51810.1| aspartyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC
            15697]
 gi|227212707|gb|EEI80588.1| aspartyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC
            55813]
 gi|239516297|gb|EEQ56164.1| aspartyl-tRNA synthetase [Bifidobacterium longum subsp. infantis CCUG
            52486]
 gi|320456477|dbj|BAJ67099.1| aspartyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM
            1217]
 gi|320457690|dbj|BAJ68311.1| aspartyl-tRNA synthase [Bifidobacterium longum subsp. infantis ATCC
            15697]
          Length = 599

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 5/56 (8%), Positives = 15/56 (26%), Gaps = 5/56 (8%)

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                    E    + G  + LA  V  ++         + ++   +     +   +
Sbjct: 5    AYRTHHATEVTEALVGQKVTLAGWVDRRRDHG-----GVAFIDLRDSTGLVQVVIY 55


>gi|171186021|ref|YP_001794940.1| putative nucleotide binding protein [Thermoproteus neutrophilus
           V24Sta]
 gi|170935233|gb|ACB40494.1| putative nucleotide binding protein [Thermoproteus neutrophilus
           V24Sta]
          Length = 193

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKL 877
           SL  ++GVG      ++E    KPF S E+   RV    +
Sbjct: 127 SLELLRGVGKKKVHEVLEERKKKPFSSYEEVKQRVGLDLV 166


>gi|23464646|ref|NP_695249.1| aspartyl-tRNA synthetase [Bifidobacterium longum NCC2705]
 gi|46577273|sp|Q8G863|SYD_BIFLO RecName: Full=Aspartyl-tRNA synthetase; AltName: Full=Aspartate--tRNA
            ligase; Short=AspRS
 gi|23325204|gb|AAN23885.1| aspartyl-tRNA synthetase [Bifidobacterium longum NCC2705]
          Length = 599

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 5/56 (8%), Positives = 15/56 (26%), Gaps = 5/56 (8%)

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                    E    + G  + LA  V  ++         + ++   +     +   +
Sbjct: 5    AYRTHHATEVTEALVGQKVTLAGWVDRRRDHG-----GVAFIDLRDSTGLVQVVIY 55


>gi|187928075|ref|YP_001898562.1| PHP domain-containing protein [Ralstonia pickettii 12J]
 gi|187724965|gb|ACD26130.1| PHP domain protein [Ralstonia pickettii 12J]
          Length = 286

 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS  ++ +G L+ + +  + AA      A+TD +
Sbjct: 14 LHCHS--TVSDGMLAPHEVAARAAAHGVTLWALTDHD 48


>gi|156740890|ref|YP_001431019.1| asparaginyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
 gi|189083276|sp|A7NHQ4|SYN_ROSCS RecName: Full=Asparaginyl-tRNA synthetase; AltName:
            Full=Asparagine--tRNA ligase; Short=AsnRS
 gi|156232218|gb|ABU57001.1| asparaginyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941]
          Length = 440

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 6/53 (11%)

Query: 980  IKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                 +  A   G  + LA  V      KT KG  + ++   + +   +   F
Sbjct: 6    TATISDI-ARHNGRVVTLAGWVAH----KTEKGKLV-FIRLRDGSGVMQCVVF 52


>gi|241662682|ref|YP_002981042.1| PHP domain-containing protein [Ralstonia pickettii 12D]
 gi|240864709|gb|ACS62370.1| PHP domain protein [Ralstonia pickettii 12D]
          Length = 286

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS  ++ +G L+ + +  + AA      A+TD +
Sbjct: 14 LHCHS--TVSDGMLAPHEVAARAAAHGVTLWALTDHD 48


>gi|260903878|ref|ZP_05912200.1| competence protein [Brevibacterium linens BL2]
          Length = 302

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  + GVG  TA  I+    ++PF +++D         +  +  ESL
Sbjct: 252 LETLPGVGPVTAEAIIAYREEQPFATVDDLLL---VPGIGPKTFESL 295


>gi|225619746|ref|YP_002721003.1| putative hydrolase [Brachyspira hyodysenteriae WA1]
 gi|225214565|gb|ACN83299.1| putative hydrolase [Brachyspira hyodysenteriae WA1]
          Length = 233

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 11/42 (26%)

Query: 14 LQVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  H+     +YS      +++ +++        A+AITD  
Sbjct: 7  LHTHTLVSEHAYS------TVDEMVNSANEKGFLALAITDHG 42


>gi|219851490|ref|YP_002465922.1| PHP domain protein [Methanosphaerula palustris E1-9c]
 gi|219545749|gb|ACL16199.1| PHP domain protein [Methanosphaerula palustris E1-9c]
          Length = 203

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 13/83 (15%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAIT-----DTNN-LFSALEFSQKAC-AAGI 67
           +H+SY+  +G  S++    +      P +A T     D N    + L+   +A     +
Sbjct: 17 HIHTSYT--DGHNSVDEYCRRAGELGIPLVAFTEHVRRDLNYDFHAFLDAVDRARDEYDL 74

Query: 68 QPII--GCQLDIDMQDNLKMTNQ 88
            II  GC+  +     L + + 
Sbjct: 75 --IILSGCEAKVLPGGTLDVDHD 95


>gi|218961223|ref|YP_001740998.1| putative Histidinol-phosphatase [Candidatus Cloacamonas
          acidaminovorans]
 gi|167729880|emb|CAO80792.1| putative Histidinol-phosphatase [Candidatus Cloacamonas
          acidaminovorans]
          Length = 246

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 16/37 (43%), Gaps = 5/37 (13%)

Query: 15 QVHSS--YSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +H+   Y   + ++   +++ +        IAIT+ 
Sbjct: 6  HIHTEDSY---DSSIKAIDLIKRAIELNYDEIAITEH 39


>gi|315223048|ref|ZP_07864927.1| comEA protein [Streptococcus anginosus F0211]
 gi|315187998|gb|EFU21734.1| comEA protein [Streptococcus anginosus F0211]
          Length = 234

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  I G+G   A+ I++   A+  F S++D     +   +  + LE L
Sbjct: 183 LQTISGIGQKRAQDILDYREANGKFSSVDDLK---NVSGVGAKTLEKL 227


>gi|186686498|ref|YP_001869694.1| phosphotransferase domain-containing protein [Nostoc punctiforme
          PCC 73102]
 gi|186468950|gb|ACC84751.1| PHP C-terminal domain protein [Nostoc punctiforme PCC 73102]
          Length = 228

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +H+ +S  +G L  + ++++  A     +AITD + +       Q A A
Sbjct: 34 HMHTVHS--DGRLQPSGLMEQAIAIGLKGLAITDHHGIIG----YQAALA 77


>gi|148657441|ref|YP_001277646.1| phosphotransferase domain-containing protein [Roseiflexus sp.
          RS-1]
 gi|148569551|gb|ABQ91696.1| PHP C-terminal domain protein [Roseiflexus sp. RS-1]
          Length = 300

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS+ S  +G L    ++    A     +A+TD 
Sbjct: 17 LHTHSNRS--DGELPPEEVIAAYRAQGYDFLALTDH 50


>gi|314936677|ref|ZP_07844024.1| DNA-dependent DNA polymerase family X [Staphylococcus hominis
           subsp. hominis C80]
 gi|313655296|gb|EFS19041.1| DNA-dependent DNA polymerase family X [Staphylococcus hominis
           subsp. hominis C80]
          Length = 570

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H++YS  +GA S+  +++         + ITD 
Sbjct: 336 LHMHTTYS--DGAFSIREMIEANIKKGYEYMVITDH 369


>gi|163757124|ref|ZP_02164228.1| ATP-dependent DNA helicase [Kordia algicida OT-1]
 gi|161322945|gb|EDP94290.1| ATP-dependent DNA helicase [Kordia algicida OT-1]
          Length = 701

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 22/82 (26%)

Query: 969  DVYKPILRKMGIKGYEESVAT------------------IRGNNIRLAAMVVSKQQKKTR 1010
            D+ +  L   GI  Y++ +                       + +++   +V  +  + +
Sbjct: 22   DLLRKEL---GIHTYQDFINLFPNRYIDKTRYFKVNELQRNSSEVQVVGKIVHIKMVQQK 78

Query: 1011 KGSRIGWVTFSEPAKEYEANFF 1032
            +G R+   TF +   E E  +F
Sbjct: 79   RGKRLV-ATFVDATGEMELVWF 99


>gi|218884365|ref|YP_002428747.1| Predicted metal-dependent phosphoesterases (PHP family)
           [Desulfurococcus kamchatkensis 1221n]
 gi|218765981|gb|ACL11380.1| Predicted metal-dependent phosphoesterases (PHP family)
           [Desulfurococcus kamchatkensis 1221n]
          Length = 232

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 12/92 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L +HS YS  +G  S   I+          I+ITD +     LE  + +           
Sbjct: 10  LHIHSVYS--DGKASPREIIRHALIRGINVISITDHDTFKGGLEGYRFSR---------- 57

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVST 105
           ++  +  D   +   G         I++    
Sbjct: 58  EIARNTSDTKILVVPGMELRSYSGDILVYCEN 89


>gi|329906691|ref|ZP_08274487.1| hypothetical protein IMCC9480_3023 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547186|gb|EGF32047.1| hypothetical protein IMCC9480_3023 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 97

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 838 SLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +L  IKG+G   ++ I++       F    D   RV  K +  +    L  AG
Sbjct: 32  ALDGIKGIGPRMSQTILDERKKGGNFKDWPDLEQRV--KGIKTKSAVRLSEAG 82


>gi|228476245|ref|ZP_04060947.1| DNA-dependent DNA polymerase beta chain [Staphylococcus hominis
           SK119]
 gi|228269648|gb|EEK11150.1| DNA-dependent DNA polymerase beta chain [Staphylococcus hominis
           SK119]
          Length = 570

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H++YS  +GA S+  +++         + ITD 
Sbjct: 336 LHMHTTYS--DGAFSIREMIEANIKKGYEYMVITDH 369


>gi|72160915|ref|YP_288572.1| phosphoesterase PHP, N-terminal [Thermobifida fusca YX]
 gi|71914647|gb|AAZ54549.1| phosphoesterase PHP, N-terminal [Thermobifida fusca YX]
          Length = 290

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  S+ +G  +   ++   AA     +A+TD +     LE +Q     G+  + G 
Sbjct: 9   LHSHS--SVSDGTGTPAEVVAHAAAAGLDVLALTDHDTTAGILEAAQHLPR-GLTLVPGI 65

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           +L    Q    +   G    P  P + 
Sbjct: 66  ELSCAYQ-GSSVHLLGYLFDPDHPELT 91


>gi|288560266|ref|YP_003423752.1| PHP domain-containing protein [Methanobrevibacter ruminantium M1]
 gi|288542976|gb|ADC46860.1| PHP domain-containing protein [Methanobrevibacter ruminantium M1]
          Length = 214

 Score = 40.5 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 17 HSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          HS +S  +G L  + +  +       AIAITD 
Sbjct: 2  HSLFS--DGELLPSELARRALVLGHEAIAITDH 32


>gi|291457466|ref|ZP_06596856.1| aspartate--tRNA ligase [Bifidobacterium breve DSM 20213]
 gi|291381301|gb|EFE88819.1| aspartate--tRNA ligase [Bifidobacterium breve DSM 20213]
          Length = 599

 Score = 40.5 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 5/56 (8%), Positives = 15/56 (26%), Gaps = 5/56 (8%)

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                    E    + G  + LA  V  ++         + ++   +     +   +
Sbjct: 5    AYRTHHATEVTEALVGQKVTLAGWVDRRRDHG-----GVAFIDLRDATGLVQVVIY 55


>gi|167750976|ref|ZP_02423103.1| hypothetical protein EUBSIR_01961 [Eubacterium siraeum DSM 15702]
 gi|167656155|gb|EDS00285.1| hypothetical protein EUBSIR_01961 [Eubacterium siraeum DSM 15702]
          Length = 273

 Score = 40.5 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            HS+ S  +G+     ++ +         ++TD 
Sbjct: 11 HNHSNLSP-DGSNDPEEMVRRATELGIRYYSLTDH 44


>gi|283851884|ref|ZP_06369161.1| PHP domain protein [Desulfovibrio sp. FW1012B]
 gi|283572800|gb|EFC20783.1| PHP domain protein [Desulfovibrio sp. FW1012B]
          Length = 202

 Score = 40.5 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 16/91 (17%)

Query: 14 LQVHSSYSLLEGALSL--NNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ--- 68
          L VH+ +S       L  + IL+   +     + +TD + +    + +QK    G+Q   
Sbjct: 5  LHVHTRFSAC---SRLALSAILENARSLGLDGVCLTDHDTM----DMAQKVRE-GVQDDG 56

Query: 69 --PIIGCQLDIDMQDNLKMTNQGKTPFPTVP 97
             +IG +     + ++ +    +   P + 
Sbjct: 57 LCVLIGME-YTTPEGDILLYGPFEDLGPGLS 86


>gi|160903075|ref|YP_001568656.1| phosphotransferase domain-containing protein [Petrotoga mobilis
           SJ95]
 gi|160360719|gb|ABX32333.1| PHP domain protein [Petrotoga mobilis SJ95]
          Length = 275

 Score = 40.5 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 62/177 (35%), Gaps = 43/177 (24%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPIIG 72
             HS+ S  +G+ + N +L+         ++ITD + L     LE  +      ++ + G
Sbjct: 6   HTHSTGS--DGSNTPNELLNLALEKNIEYLSITDHDTLDGVKSLENFKDLKK--LKFVPG 61

Query: 73  CQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQ------RLIELVSR-------- 118
            ++                 FPT   ++       GY       RL +++          
Sbjct: 62  VEIS--------------AEFPTTLHLL-------GYGFDSNNERLNKVLEELQEFRKKR 100

Query: 119 --MYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLT 173
             + + +  K   +I L  L++     LI     +S  + + +  N  +  +K L  
Sbjct: 101 NVLMIENMQKLGFQITLEELKKEAGGELIGRPHFASLMVKKNYVSNKQEAFDKYLKK 157


>gi|83951582|ref|ZP_00960314.1| hypothetical protein ISM_13505 [Roseovarius nubinhibens ISM]
 gi|83836588|gb|EAP75885.1| hypothetical protein ISM_13505 [Roseovarius nubinhibens ISM]
          Length = 309

 Score = 40.5 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS  S  +G L    +  +  A+    +A+TD 
Sbjct: 17 LHTHSDRS--DGVLPPEEVCRRYHAEGYDFLALTDH 50


>gi|145489044|ref|XP_001430525.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124397623|emb|CAK63127.1| unnamed protein product [Paramecium tetraurelia]
          Length = 3520

 Score = 40.5 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 52/615 (8%), Positives = 114/615 (18%), Gaps = 50/615 (8%)

Query: 235  AHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPR 294
              + +   K R  V P        +  +  S       N    A  C+  L         
Sbjct: 866  QQTYLHQTKYRTCVYPCDDQYYPEQKTNQCSKCNSPCYNCQNSANFCTKCLPGLFLQDNS 925

Query: 295  FIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFS 354
             I       +    N+  +   +G  +      I          Q        I  M   
Sbjct: 926  CINPCISKFKNYINNQCEDTCSSGFTINDKINGIKY--------QGCVSFCGEIFSM--- 974

Query: 355  GYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLNPDRMS 414
                     + +      P+G     G      Y    T   P +   L          +
Sbjct: 975  -----FLYILNFQCYQTPPIG-AYCIGYQCYDCYYQCKTCSGPQQNECLSCYDNTFFFDN 1028

Query: 415  MPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDR 474
                D   C  +  +++ +              +   L        +  +    ++Q   
Sbjct: 1029 QCVVD---CDTQFHDLLNWKCVDVCPSNSYTTTSLNILINTEVKLKIFCSSTCLHNQFQY 1085

Query: 475  LCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEG----LYRHASTHAA 530
              +     P     +Q        +     +  VD      QK            S    
Sbjct: 1086 QDQCTDTQPEGTSCVQKSDYKLCDKCVTECEECVDHYSTTCQKCNPGFYLYNTTCSQECP 1145

Query: 531  GIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
              +     L  +   + D              +E     ++D                  
Sbjct: 1146 DDIPYKDTLKNICVDFCDNNYYHQNGFCVASCLE--NYYRYDAQKQCY---EFDCPKGTY 1200

Query: 591  QRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLY 650
             +   ++               +             G  +               +    
Sbjct: 1201 NKVSTLNCYDCSQGCATCQDGKSNSCITCKEGYFLQGTSRCTNVCNVSPDLYQDWINGKC 1260

Query: 651  RPGP-----IDNIVVYNNRKNGKEKIVSIHPLIDPMLK-------ETQGVI------IYQ 692
                     +  +            +     L   +          T           Y 
Sbjct: 1261 VNQCPTGTYLQTLPSEQLACKNTCPLYYYSNLCVAICPVQSFLEGTTCTSCAGACRLCYG 1320

Query: 693  EQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFEL 752
             Q  Q  Q  SGY L++   +                ++             +A      
Sbjct: 1321 RQANQCTQCNSGYYLADTTCVEIC---PNATPYQNLADQTCVSICPQNHFLYLAKKYCFS 1377

Query: 753  LAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQF 812
                    +  +         Y  +++ +       +                  +   +
Sbjct: 1378 YCPSTLTIYQLNGKNECVDQCYSNSYLYSRTCYPCHSYCQECYGPKNGNCLSCSSEYYFY 1437

Query: 813  NIQIMPPSVNTPCVD 827
              +      +    D
Sbjct: 1438 EQKCEISCPSQLYTD 1452


>gi|119473243|ref|ZP_01614920.1| hypothetical protein ATW7_09838 [Alteromonadales bacterium TW-7]
 gi|119444537|gb|EAW25854.1| hypothetical protein ATW7_09838 [Alteromonadales bacterium TW-7]
          Length = 98

 Score = 40.5 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           LA + G+G   A+ I+     +  F SLED       K + ++V+  L
Sbjct: 48  LAKLPGIGKKKAQAIVNYRDENGVFTSLEDLAK---VKGIGKKVMSKL 92


>gi|91784221|ref|YP_559427.1| hypothetical protein Bxe_A1580 [Burkholderia xenovorans LB400]
 gi|91688175|gb|ABE31375.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
          Length = 276

 Score = 40.5 bits (93), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 2/95 (2%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G  +  ++  +  A      A+TD + L    E    A A G+  + G 
Sbjct: 5   LHCHS--TVSDGQFAPADVARRAHAGGVTLWALTDHDELGGQREAKSTAEALGMAYLSGV 62

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEG 108
           ++ +                 +   I  L  T  G
Sbjct: 63  EISVTWASRTVHIVGLGIDPTSAVLIDGLARTRNG 97


>gi|237785928|ref|YP_002906633.1| hypothetical protein ckrop_1348 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758840|gb|ACR18090.1| hypothetical protein ckrop_1348 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 131

 Score = 40.5 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCS 870
           L AI GVG  TA  I+     + PF S++    
Sbjct: 81  LTAIPGVGPKTASAIIAYREQNGPFRSIDQLAE 113


>gi|229821037|ref|YP_002882563.1| PHP domain protein [Beutenbergia cavernae DSM 12333]
 gi|229566950|gb|ACQ80801.1| PHP domain protein [Beutenbergia cavernae DSM 12333]
          Length = 425

 Score = 40.5 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 14/73 (19%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK------ACAAGIQ 68
             H+ +S  +G+ S++ +  +  A     +A+TD N +               A   GI 
Sbjct: 149 HAHTLHS--DGSESIDQLAARGVASGLDFLAVTDHNTVS-----HHAHLPGVGAR-HGIS 200

Query: 69  PIIGCQLDIDMQD 81
            + G ++      
Sbjct: 201 LVPGQEVTTARGH 213


>gi|119715758|ref|YP_922723.1| hypothetical protein Noca_1522 [Nocardioides sp. JS614]
 gi|119536419|gb|ABL81036.1| PHP C-terminal domain protein [Nocardioides sp. JS614]
          Length = 378

 Score = 40.5 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS +S  +G   +  +           + +TD 
Sbjct: 140 LHSHSDWS--DGGSPIEEMAFTAIELGHDYLVLTDH 173


>gi|296268152|ref|YP_003650784.1| family 2 glycosyl transferase [Thermobispora bispora DSM 43833]
 gi|296090939|gb|ADG86891.1| glycosyl transferase family 2 [Thermobispora bispora DSM 43833]
          Length = 694

 Score = 40.5 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 57/440 (12%), Positives = 120/440 (27%), Gaps = 40/440 (9%)

Query: 154 PIDRAFFFNSSQVAEKRLLTFKKLF----GDRLYVNLQRHRGYDRYR------------E 197
              R  F       E  L  ++++F     D L+     H    R+R             
Sbjct: 149 DFSRLAFRYEWDQIEFGLHDWREIFAEKRPDLLFCESAWHGNQGRWRYQMTGTNAPKKEL 208

Query: 198 SQVVQLAYTHELPLVATNNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNR 257
            ++V       +P V      F ++ED    D  +  A            + P +     
Sbjct: 209 RELVAWFKEQGIPTV------FWNKEDPPNFDHFIETAKLFDYVYTCDGDMIPKYREILG 262

Query: 258 SEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVA 317
            + V +     +   +     R       V A +  R    E  +  +     LR   + 
Sbjct: 263 HDRVGVLQFAAQPRIHNPIQTRLGRPYDIVFAGMYFRDKHPERREQMETVLAPLRELGLH 322

Query: 318 GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPG 377
                       K    ++YR  +  EL     +     + I  +         +     
Sbjct: 323 IFARNAT--VADKYAWPEEYRPHIVGELPYEQMLAAYKMYKIFLNVNSVIDSPTMCARRV 380

Query: 378 RGSGAGSVTAYALT-------ITDIDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEV 430
               A S T  +           D+ P+  +      L    ++ P+           EV
Sbjct: 381 FELSACSTTVLSGWSRAIEETFGDLIPVAHTQEEAYNLALYFLNSPELRARQGHLAMREV 440

Query: 431 IRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMP--YSQVDRLCKLIPNDPAHPVS 488
           +      +  +++ + + +       ++  V    +       + ++ +    +    + 
Sbjct: 441 LSKHTFSHRVDQILRDLGWPVRPRSRSVSVVLPTNRPGQIEHAISQVARQRHRNLELVLV 500

Query: 489 LQAIADDS---RFREARLADPSVDRLLEISQKLEGLYRHAST-HAAGIVIGDRPLSQLVP 544
           L  +++D    R +      P V  L        G   +    HA G +I          
Sbjct: 501 LHNMSEDPSVVRDKALAAGIPEVKVLTADPDWTLGEVLNHGIAHAEGELIAKMDDDN--- 557

Query: 545 MYRDVRSDLPVTQFNMKWIE 564
           +Y +      +  F+    E
Sbjct: 558 IYGEHYLSDLIRAFDYTDAE 577


>gi|294101677|ref|YP_003553535.1| PHP domain protein [Aminobacterium colombiense DSM 12261]
 gi|293616657|gb|ADE56811.1| PHP domain protein [Aminobacterium colombiense DSM 12261]
          Length = 264

 Score = 40.5 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 7/47 (14%)

Query: 9  PSFVHLQVHSSYSL---LE-GALSLNNILDKIAADQQPAIAITDTNN 51
          P +V L +H+  S    LE GA   ++I+ K   +    IAITD N+
Sbjct: 16 PYYVDLHIHTVLSPCGELEMGA---HDIVSKARQEGIQIIAITDHNS 59


>gi|158317668|ref|YP_001510176.1| aspartyl-tRNA synthetase [Frankia sp. EAN1pec]
 gi|158113073|gb|ABW15270.1| aspartyl-tRNA synthetase [Frankia sp. EAN1pec]
          Length = 619

 Score = 40.5 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 6/55 (10%), Positives = 16/55 (29%), Gaps = 4/55 (7%)

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             M      +      G  + +   V  ++Q     G  + +V   + +   +   
Sbjct: 14   AMRTHLCGDLGLGNAGQRVTVCGWVAHRRQH----GQSLMFVDLRDHSGLLQCVV 64


>gi|76801079|ref|YP_326087.1| family X DNA-dependent DNA polymerase [Natronomonas pharaonis DSM
           2160]
 gi|76556944|emb|CAI48518.1| DNA-directed DNA polymerase (family X) / ycdX protein homolog
           [Natronomonas pharaonis DSM 2160]
          Length = 580

 Score = 40.5 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H++ S  +G  S+  + +  A      IA+ D 
Sbjct: 353 LHLHTTAS--DGQTSVEGMAEAAAEYGHEYIAVADH 386


>gi|291557456|emb|CBL34573.1| histidinol phosphate phosphatase HisJ family [Eubacterium siraeum
          V10Sc8a]
          Length = 273

 Score = 40.5 bits (93), Expect = 1.7,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            HS+ S  +G+     ++ +         ++TD 
Sbjct: 11 HNHSNLSP-DGSNDPEEMVRRATELGIRYYSLTDH 44


>gi|332158294|ref|YP_004423573.1| DNA polymerase II small subunit [Pyrococcus sp. NA2]
 gi|331033757|gb|AEC51569.1| DNA polymerase II small subunit [Pyrococcus sp. NA2]
          Length = 618

 Score = 40.2 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 9/68 (13%)

Query: 968  LDVYKPILRKM----GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            L   + ILR+      +    +      G  + +  +V SK++    +G         + 
Sbjct: 235  LAKIRKILRENSEISNVVDIGKLKYVREGEEVVIIGLVNSKREVS--RG---LIFEIEDQ 289

Query: 1024 AKEYEANF 1031
                +   
Sbjct: 290  TGRIKVFL 297


>gi|218439846|ref|YP_002378175.1| PHP domain protein [Cyanothece sp. PCC 7424]
 gi|218172574|gb|ACK71307.1| PHP domain protein [Cyanothece sp. PCC 7424]
          Length = 230

 Score = 40.2 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +H++ S  +G LS   ++++        +AITD ++        + A  
Sbjct: 36 HMHTTCS--DGKLSPVALIEQAVKIGLKGMAITDHHSTQG----YKIAQE 79


>gi|160936218|ref|ZP_02083591.1| hypothetical protein CLOBOL_01114 [Clostridium bolteae ATCC BAA-613]
 gi|158441028|gb|EDP18752.1| hypothetical protein CLOBOL_01114 [Clostridium bolteae ATCC BAA-613]
          Length = 1405

 Score = 40.2 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 60/228 (26%), Gaps = 13/228 (5%)

Query: 114  ELVSRMYLLDQ-GKQSVRICLSWLQEIGTEGL-------IMLTGGSSGPIDRAFFFNSSQ 165
            EL S + +        + I   WL+ +  +GL       I +         RA      +
Sbjct: 875  ELHSLLMMEGDLEAGELDIPADWLEALARQGLACYVEPGIWIAAEHEDEYMRALQQQDEE 934

Query: 166  VAEKRLLTFKKLFGDRLYVNL-QRHRGYDRYRESQVVQLAYTHELPLVATNNSLFLSEED 224
             A   +       G +  V++ +R+   +   E+ + +L        V      +  +  
Sbjct: 935  AAMHIVRRMLYYRGGQTAVDVRERYFLSEEMTEALLDKLCRC--KKAVEDQGVYYHEKLY 992

Query: 225  YEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFI 284
              A +  + +  S   +Q                        L EA+E          F 
Sbjct: 993  ERAREGHIRILRSQTATQPASHYAALMAARAVTHSTAE--EQLREAVEKGCRKPCPVRFW 1050

Query: 285  LQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGY 332
              V+             D    + +     +  G     +   I    
Sbjct: 1051 ENVYFARRVERYGASLLDRLLAQGDYFWRMSPEGTLCFCSYEDIDWEA 1098


>gi|74317784|ref|YP_315524.1| competence protein ComEA [Thiobacillus denitrificans ATCC 25259]
 gi|74057279|gb|AAZ97719.1| Competence protein ComEA [Thiobacillus denitrificans ATCC 25259]
          Length = 89

 Score = 40.2 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L AI+GVG   A+ I+    A+  F S+++       K   +  +E L
Sbjct: 32  LEAIRGVGPAKAKAIISYRDANGAFKSVQELDK---VKGFGKASVEKL 76


>gi|116490994|ref|YP_810538.1| DNA uptake protein or related DNA-binding protein [Oenococcus oeni
           PSU-1]
 gi|290890473|ref|ZP_06553548.1| hypothetical protein AWRIB429_0938 [Oenococcus oeni AWRIB429]
 gi|116091719|gb|ABJ56873.1| DNA uptake protein-like DNA-binding protein [Oenococcus oeni PSU-1]
 gi|290479869|gb|EFD88518.1| hypothetical protein AWRIB429_0938 [Oenococcus oeni AWRIB429]
          Length = 109

 Score = 40.2 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 838 SLAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
           +L  I G+G   A  I++   +   F S++D     +      + +E L
Sbjct: 57  ALQTINGIGEKKAEEIVKYREEHGKFKSIDDLK---NISGFGDKTVEKL 102


>gi|300853933|ref|YP_003778917.1| putative DNA-binding competence protein [Clostridium ljungdahlii
           DSM 13528]
 gi|300434048|gb|ADK13815.1| predicted DNA-binding competence protein [Clostridium ljungdahlii
           DSM 13528]
          Length = 205

 Score = 40.2 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS--RVDSKKLNR 879
           L  I GVG  TA+ I++    +  F S+ED     R+  K + +
Sbjct: 154 LKTISGVGDVTAQKIIDYREKNGNFSSIEDLKKVGRIGDKTIEK 197


>gi|229819561|ref|YP_002881087.1| PHP domain protein [Beutenbergia cavernae DSM 12333]
 gi|229565474|gb|ACQ79325.1| PHP domain protein [Beutenbergia cavernae DSM 12333]
          Length = 339

 Score = 40.2 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L VH+S S  +G   L  +        +  IAITD 
Sbjct: 105 LHVHTSES--DGGSPLGEMAGVARRLGREYIAITDH 138


>gi|229543615|ref|ZP_04432675.1| PHP domain protein [Bacillus coagulans 36D1]
 gi|229328035|gb|EEN93710.1| PHP domain protein [Bacillus coagulans 36D1]
          Length = 572

 Score = 40.2 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+ +S  +G  SL ++++         IAITD 
Sbjct: 338 LHMHTVWS--DGKDSLEDMVNACRRRGYEYIAITDH 371


>gi|288931772|ref|YP_003435832.1| PHP domain protein [Ferroglobus placidus DSM 10642]
 gi|288894020|gb|ADC65557.1| PHP domain protein [Ferroglobus placidus DSM 10642]
          Length = 212

 Score = 40.2 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
           +HS+YS  +G   ++ I+ K    +   I I D ++
Sbjct: 5  HIHSTYS--DGKGKIDEIVRKAMERKLKIICIADHSS 39


>gi|239636361|ref|ZP_04677363.1| DNA-dependent DNA polymerase beta chain [Staphylococcus warneri
           L37603]
 gi|239597716|gb|EEQ80211.1| DNA-dependent DNA polymerase beta chain [Staphylococcus warneri
           L37603]
          Length = 570

 Score = 40.2 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H++YS  +GA S+ ++ +   A     + ITD 
Sbjct: 336 LHMHTTYS--DGAFSIRDMAEANIAKGYEFMVITDH 369


>gi|283779675|ref|YP_003370430.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Pirellula staleyi
           DSM 6068]
 gi|283438128|gb|ADB16570.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Pirellula staleyi
           DSM 6068]
          Length = 194

 Score = 40.2 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 16/131 (12%)

Query: 869 CSRVDSKKLNRRVL---ESLVFAGALDCFGYSRMQLL-QSLDNIQKYAQWVEKNRTNKHE 924
             RV   +     +     L  AG+L  F  SR  L        ++ A    + R  +  
Sbjct: 37  ARRVGPHQHEVADIVQETFLAAAGSLRTFDPSRGTLWGWLSGIARRQAALYFRRRQTRPP 96

Query: 925 ----NIFAHEKGTFSDKITLEKFSVENSSVRFENEQRVLGFYFSGHPLDVYKPIL--RKM 978
               ++F  E         L    + +++   ++ +  L    S  PLD Y+ +L  R +
Sbjct: 97  SFETSLFDAESAQLETSEPLPA-DLLSAAETAQSVREAL----SMLPLD-YEELLVARYL 150

Query: 979 GIKGYEESVAT 989
                +E  A 
Sbjct: 151 DELSLDELAAR 161


>gi|226362809|ref|YP_002780587.1| hypothetical protein ROP_33950 [Rhodococcus opacus B4]
 gi|226241294|dbj|BAH51642.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 332

 Score = 40.2 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS +S  +G   ++ ++   A       A+TD 
Sbjct: 99  LHTHSDWS--DGGSPIDEMMRSAALIGHEYCALTDH 132


>gi|325960181|ref|YP_004291647.1| nucleic acid binding OB-fold tRNA/helicase-type [Methanobacterium sp.
            AL-21]
 gi|325331613|gb|ADZ10675.1| nucleic acid binding OB-fold tRNA/helicase-type [Methanobacterium sp.
            AL-21]
          Length = 130

 Score = 40.2 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 3/51 (5%), Positives = 17/51 (33%), Gaps = 3/51 (5%)

Query: 982  GYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +    +    + +  +V   +  K++      ++  ++   + +   F
Sbjct: 34   HITDINRGMLDKQVSIHGVVEEIK--KSKTSDTY-FLELADETGKIDVVVF 81


>gi|33322983|gb|AAQ07228.1|AF496536_1 DNA polymerase III, alpha chain [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 67

 Score = 40.2 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 830 VGDNRIYYSLAAIKGVGTTTARHIMEASADKPF 862
           V  + I     A+ G G + A+ I+ A ++ PF
Sbjct: 34  VDKHTILAPFNAVDGXGDSAAKQIVAARSEAPF 66


>gi|315226822|ref|ZP_07868610.1| competence protein ComEA [Parascardovia denticolens DSM 10105]
 gi|315120954|gb|EFT84086.1| competence protein ComEA [Parascardovia denticolens DSM 10105]
          Length = 279

 Score = 40.2 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
           L  IKG+G +TA+ I++      PF S++D     +   +  + L   + A
Sbjct: 229 LQTIKGIGPSTAKRIIDYRTMKGPFHSVDDLL---NVSGIGVKTLAK-IRA 275


>gi|294787584|ref|ZP_06752837.1| competence protein [Parascardovia denticolens F0305]
 gi|294484940|gb|EFG32575.1| competence protein [Parascardovia denticolens F0305]
          Length = 87

 Score = 40.2 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
           L  IKG+G +TA+ I++      PF S++D     +   +  + L   + A
Sbjct: 37  LQTIKGIGPSTAKRIIDYRTMKGPFHSVDDLL---NVSGIGVKTLAK-IRA 83


>gi|254412599|ref|ZP_05026372.1| Phospholipase D active site motif domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180334|gb|EDX75325.1| Phospholipase D active site motif domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 542

 Score = 40.2 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  + G+G   A  I+ A + KPF SL D   RV    +   +L+ L
Sbjct: 493 LETLPGIGPKLAERIITARSQKPFTSLADL-DRV--SGIGPHLLQQL 536


>gi|156554244|ref|XP_001601320.1| PREDICTED: similar to zinc finger, NFX1-type containing 1 [Nasonia
            vitripennis]
          Length = 1894

 Score = 40.2 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 34/439 (7%), Positives = 89/439 (20%), Gaps = 30/439 (6%)

Query: 267  LPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQG 326
                  +   +  R         P L          +   E  +     V          
Sbjct: 1223 CGHPCLSVCHMRDREHKEFSCRQPCLKACSFNHPCPLLCYEGCKACKVKVECELRCGHTV 1282

Query: 327  AIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVT 386
             ++             F   +            +  F  +A +      P         T
Sbjct: 1283 EMSCSSDPD------TFPCYIQVETTLPDCKHQIQKFCHFADELCSCTYPCDSRLPCGHT 1336

Query: 387  AYALTITDIDPLRFSLLFERFL---------NPDRMSMPDFDIDFC----QDRRDEVIRY 433
                   + DP        +                     +   C    +  R     Y
Sbjct: 1337 CKHTCHVNKDPDHIEYKCSKDCAKTYVGCDNGHPCKKKCFEECGLCPIKVEKTRSCGHFY 1396

Query: 434  VQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPY-SQVDRLCKLIPNDPAHPVSLQAI 492
             Q + G +   Q       +         + L      + + + +       H + ++  
Sbjct: 1397 KQAQCGEDLEKQPCVRPCKRDIPTCGHKCKQLCCDPCGKCEIIVEKKSIKCGHTLKIKCC 1456

Query: 493  ADDSRFREARLADPSVDRLLEISQKLEGLYRHA-----STHAAGIVIGDRPLSQLVPMYR 547
             +    +       ++      ++K +             +  G+      +     +  
Sbjct: 1457 NEAEPSKCNGKCPKTLPCGHPCTKKCKDQCTTKCQIMVKLNEPGLCGHAFEVPCF--LQS 1514

Query: 548  DVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHE 607
                   + ++  +  +     +    G       Q  +           L      +  
Sbjct: 1515 SDPKSEDLLKYCKESCKTKLACQHYCKGNCG-ECQQGRMHIFCAEPCGFPLVCGHLCEDP 1573

Query: 608  TYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDII--ALVSLYRPGPIDNIVVYNNRK 665
                  +       Q + S  +         CIE           +    +   +    +
Sbjct: 1574 CREQCKSCKRNCELQCQHSKCKNKCGMPCSPCIEKCALGCEHKKCKKRCSEICNIEPCME 1633

Query: 666  NGKEKIVSIHPLIDPMLKE 684
              K+K+   HP +    + 
Sbjct: 1634 LCKKKLKCDHPCVGFCGEP 1652


>gi|328955417|ref|YP_004372750.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Coriobacterium glomerans PW2]
 gi|328455741|gb|AEB06935.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Coriobacterium glomerans PW2]
          Length = 248

 Score = 40.2 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L A+ GVG +TA+ I++    + PF  +ED         +  +  E L
Sbjct: 198 LDALPGVGPSTAQAIIDDRTQNGPFSGIEDLMR---VSGIGEKKFEKL 242


>gi|319939206|ref|ZP_08013569.1| competence protein CelA [Streptococcus anginosus 1_2_62CV]
 gi|319811602|gb|EFW07878.1| competence protein CelA [Streptococcus anginosus 1_2_62CV]
          Length = 234

 Score = 40.2 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  I G+G   A+ I++   A+  F+S++D     +   +  + LE L
Sbjct: 183 LQTISGIGQKRAQDILDYREANGKFNSVDDLK---NVSGVGAKTLEKL 227


>gi|240102185|ref|YP_002958493.1| DNA polymerase II small subunit [Thermococcus gammatolerans EJ3]
 gi|239909738|gb|ACS32629.1| DNA polymerase II small subunit (dp1/polB) [Thermococcus
            gammatolerans EJ3]
          Length = 660

 Score = 40.2 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 9/68 (13%)

Query: 968  LDVYKPILRKM----GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEP 1023
            L   + I R+     GI    +      G+ + +  ++  K++  T KG     +   + 
Sbjct: 274  LKKMRRIFRENPEIGGIIDIGKLSYVQPGSEVTVVGLLTDKRE--TSKG---YVLELEDA 328

Query: 1024 AKEYEANF 1031
                +   
Sbjct: 329  TGRIKVFI 336


>gi|319651627|ref|ZP_08005754.1| hypothetical protein HMPREF1013_02366 [Bacillus sp. 2_A_57_CT2]
 gi|317396694|gb|EFV77405.1| hypothetical protein HMPREF1013_02366 [Bacillus sp. 2_A_57_CT2]
          Length = 212

 Score = 40.2 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  + G+G + A  I+E    + PF  + D         +  +  E L
Sbjct: 161 LQMLPGIGPSKAAAIIEHRETNGPFKDVADLKL---ISGIGEKTFEKL 205


>gi|313127204|ref|YP_004037474.1| DNA polymerase iv (family x) [Halogeometricum borinquense DSM
           11551]
 gi|312293569|gb|ADQ68029.1| DNA polymerase IV (family X) [Halogeometricum borinquense DSM
           11551]
          Length = 582

 Score = 40.2 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS +S  +G  S++ ++           A+TD 
Sbjct: 352 LHTHSDWS--DGRYSISEMVAAAEERGYDYYAVTDH 385


>gi|110632678|ref|YP_672886.1| RNA binding S1 [Mesorhizobium sp. BNC1]
 gi|110283662|gb|ABG61721.1| RNA binding S1 [Chelativorans sp. BNC1]
          Length = 772

 Score = 40.2 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 7/104 (6%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           LA + G+G + A  I+     + P+ S +D        +L +R  E    AG L     +
Sbjct: 505 LARVSGLGASLAEAIVAHRNINGPYASRQDLLK---VARLGQRTFEQ--CAGFLRITNGT 559

Query: 898 R-MQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITL 940
             +            A+ +         ++        +    +
Sbjct: 560 EPLDASAVHPEAYHLARRIVAACGRDVRSLMGDSGALKALDPRV 603


>gi|291288861|ref|YP_003505677.1| glycosyl transferase group 1 [Denitrovibrio acetiphilus DSM
          12809]
 gi|290886021|gb|ADD69721.1| glycosyl transferase group 1 [Denitrovibrio acetiphilus DSM
          12809]
          Length = 797

 Score = 40.2 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 16/52 (30%)

Query: 15 QVHSSYS------LLE--GALSLNNILD------KIAADQQPAIAITDTNNL 52
            HS +S       L+  GA    +  +         +     + ITD NN+
Sbjct: 7  HCHSKFSKHPSEWFLQRIGAA--ESYTEPDFIYNTAKSRGMDFVTITDHNNM 56


>gi|319641887|ref|ZP_07996561.1| hypothetical protein HMPREF9011_02160 [Bacteroides sp. 3_1_40A]
 gi|317386489|gb|EFV67394.1| hypothetical protein HMPREF9011_02160 [Bacteroides sp. 3_1_40A]
          Length = 632

 Score = 40.2 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L +HS  S  +G ++   I+DK   ++   IA+TD + +
Sbjct: 13 LHIHSDAS--DGKMNCQEIIDKAKEEKLSVIALTDHHTV 49


>gi|242004311|ref|XP_002423043.1| Laminin beta-1 chain precursor, putative [Pediculus humanus corporis]
 gi|212505974|gb|EEB10305.1| Laminin beta-1 chain precursor, putative [Pediculus humanus corporis]
          Length = 1767

 Score = 40.2 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/219 (9%), Positives = 45/219 (20%), Gaps = 25/219 (11%)

Query: 680  PMLKETQGVIIYQEQVMQIAQLLS--GYSLSEADVLRRAMGKKIKEEMDKQKERFISGAS 737
            P  + T         +           + ++  +         +    ++          
Sbjct: 1025 PCDRTTGQCPCLPNVIGLSCDTCKENHWKIASGNGCEPCGCDPVGSYSEQCNYFDGQCNC 1084

Query: 738  KNGISKTIAVNIFELLAKFADYGFNK--SHAAAYAVISYQTAWMKTHYPVEFLAASMTLE 795
              G                  +G  K   H     V    T     +         +   
Sbjct: 1085 APGFGSRRCDQCQAYF-----WGDPKVQCHQCECDVNGSATLQCHRNNGSCICLEGIGGS 1139

Query: 796  MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIKGVGTT------- 848
              +                     + N    D  V   ++  S + IK VG         
Sbjct: 1140 KCDKCARGYLGVAPDCRFCGECFKNWNDILEDLIVQSEKVILSASNIKNVGVQGAYTHKF 1199

Query: 849  -TARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLV 886
                 I++         ++D    ++         E+L+
Sbjct: 1200 LAMEKILD--------DVQDLLKNMNMSARELATTENLI 1230


>gi|33326782|gb|AAQ08813.1| BzdU [Azoarcus sp. CIB]
          Length = 212

 Score = 40.2 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 7/38 (18%)

Query: 15 QVHSSYSL---LEGALSLNNILDKIAADQQPAIAITDT 49
            H+ YS    LE      +++ +        + IT+ 
Sbjct: 6  HCHTKYSYDNWLE----PVDLIRRAKELGLDGVCITEH 39


>gi|18369661|emb|CAD21634.1| hypothetical protein [Azoarcus evansii]
          Length = 213

 Score = 40.2 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 7/38 (18%)

Query: 15 QVHSSYSL---LEGALSLNNILDKIAADQQPAIAITDT 49
            H+ YS    LE      +++ +        + IT+ 
Sbjct: 6  HCHTKYSYDNWLE----PVDLIRRAKELGLDGVCITEH 39


>gi|220916495|ref|YP_002491799.1| PHP domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954349|gb|ACL64733.1| PHP domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 592

 Score = 40.2 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
             H+++S  +G  S+  +     A     + +TD +    
Sbjct: 362 HCHTTWS--DGRASVEEMARAAEALGMAYLTVTDHSGSAG 399


>gi|86158982|ref|YP_465767.1| phosphoesterase, PHP-like [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775493|gb|ABC82330.1| phosphoesterase, PHP-like protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 592

 Score = 40.2 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS 54
             H+++S  +G  S+  +     A     + +TD +    
Sbjct: 362 HCHTTWS--DGRASVEEMARAAEALGMAYLTVTDHSGSAG 399


>gi|312144588|ref|YP_003996034.1| histidinol phosphate phosphatase HisJ family [Halanaerobium sp.
          'sapolanicus']
 gi|311905239|gb|ADQ15680.1| histidinol phosphate phosphatase HisJ family [Halanaerobium sp.
          'sapolanicus']
          Length = 274

 Score = 40.2 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +HS +S  +  +++  I++         IAITD 
Sbjct: 6  HMHSHFSA-DSQMNMEEIIETAIKIGLDEIAITDH 39


>gi|169334365|ref|ZP_02861558.1| hypothetical protein ANASTE_00764 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169259082|gb|EDS73048.1| hypothetical protein ANASTE_00764 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 316

 Score = 40.2 bits (92), Expect = 2.0,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
            H++ S  +G  +   ++D  A +    + I+D +
Sbjct: 15 HCHTTRS--DGLCTPKELIDLAAGEGMNVLTISDHD 48


>gi|281420852|ref|ZP_06251851.1| putative hydrolase [Prevotella copri DSM 18205]
 gi|281405144|gb|EFB35824.1| putative hydrolase [Prevotella copri DSM 18205]
          Length = 240

 Score = 40.2 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 62/231 (26%), Gaps = 66/231 (28%)

Query: 15  QVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTN-------------NLFSAL 56
             H+     ++S      SL  +           + IT+               NL    
Sbjct: 8   HTHTIASGHAFS------SLQEMTLTAKEKGLDILGITEHGPNIPGSCDPIYFRNLHCVP 61

Query: 57  EFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELV 116
                    GI+ ++G +L+I         ++       +  I        G   L    
Sbjct: 62  R-----QLYGIKLMLGAELNILNTKGDIDLDEDYWRILDI-RI-------AGIHSLCW-- 106

Query: 117 SRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKK 176
                    K           E  T+G+I        P  +         AE       K
Sbjct: 107 -----QGGSK-----------EENTQGVI---NAMRNPFVQIISHPGDGTAELDFEELMK 147

Query: 177 LFGD-RLYVNLQRHRGYDRYR-------ESQVVQLAYTHELPLVATNNSLF 219
           +  +    + +  H                ++++LA  +E P++  +++ F
Sbjct: 148 VSRETHTLLEINNHSMAPIRHKTVAAPNNLELLELAKKYETPVIFGSDAHF 198


>gi|119025594|ref|YP_909439.1| aspartyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703]
 gi|154487055|ref|ZP_02028462.1| hypothetical protein BIFADO_00893 [Bifidobacterium adolescentis
            L2-32]
 gi|118765178|dbj|BAF39357.1| aspartyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703]
 gi|154084918|gb|EDN83963.1| hypothetical protein BIFADO_00893 [Bifidobacterium adolescentis
            L2-32]
          Length = 599

 Score = 40.2 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 5/56 (8%), Positives = 15/56 (26%), Gaps = 5/56 (8%)

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                    E    + G  + LA  V  ++         + ++   +     +   +
Sbjct: 5    AYRTHHATEVTEQLVGQKVTLAGWVDRRRDHG-----GVAFIDLRDNTGLVQVVIY 55


>gi|270262117|ref|ZP_06190389.1| phosphotransferase domain-containing protein [Serratia odorifera
          4Rx13]
 gi|270043993|gb|EFA17085.1| phosphotransferase domain-containing protein [Serratia odorifera
          4Rx13]
          Length = 330

 Score = 40.2 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
          L  H++ S  +G L+   ++ +    +   +AITD + 
Sbjct: 51 LHSHTTAS--DGYLTPAQLVQRAVEMRVGVLAITDHDT 86


>gi|126331122|ref|XP_001371993.1| PREDICTED: similar to Fraser syndrome 1 [Monodelphis domestica]
          Length = 3967

 Score = 40.2 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 41/641 (6%), Positives = 112/641 (17%), Gaps = 38/641 (5%)

Query: 219 FLSEEDYEAHDVLMA-VAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPE-------- 269
           +   E +  +               K           +++        D           
Sbjct: 198 YQHGEQWTENACTTCVCDKGETRCHKHECPPLTCEKGQHKVHHPKECCDKCRSSTGHCLY 257

Query: 270 --ALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGA 327
              L    E+ +       +           EC  ++  ++ EL +         +++  
Sbjct: 258 DGILRYHDEMWKSSPCEFCICNRGQVTCHIGECATVKCTQDEELIHLEGKCCPECVSRHQ 317

Query: 328 IAKGYHAQDYRQRLDFELNVIARMKFSGYFLIV--ADFIQWAKKNNIPVGPGRGSGAGSV 385
                      +R +     +   + +                     +G    +     
Sbjct: 318 HCLYEEHIKDGERWNEGPCKMCECQDAQVICYQPSCLLCPVGTLAVEMMGQCCPACKPVP 377

Query: 386 TAYALTITDIDPLRFSLLFE---RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHER 442
                      P    L  +   +  N   +   D              +          
Sbjct: 378 CHPDCLTCSESPDHCDLCQDPGKKLQNGRCVYSCDPGFYQSGGLCLACQQECATCTNGFE 437

Query: 443 VAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREAR 502
            +       ++ +  +   GR     + Q     K        P     ++  ++F+  R
Sbjct: 438 CSSCQPSLLMKERQCVAACGRGFYQDHHQCLGCHKSCATCWG-PTEKNCLSCKNQFQMLR 496

Query: 503 LADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVT----QF 558
                   + E+ +K           +    + + P                +     ++
Sbjct: 497 EGFCEGGCIQELYKKSGICDVCDP--SCETCVPESPRCLTCAKNTMWHDGRCLAACPPRY 554

Query: 559 NMKWIEKAGLIKFDFLGLKTLTLLQKSLD----FLAQRGVKVDLSLIPFDDHETYHLLTT 614
                 +              +            L Q     D     + DH        
Sbjct: 555 YPDTTGRCSGCHSSCASCDGPSASHCIACPHSQVLHQNQCLSDCGQSFYSDHGICK-ACH 613

Query: 615 KGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRK-----NGKE 669
              L     E     Q     +      +   +             Y             
Sbjct: 614 PSCLNCVGPEPFSCTQCRNATEGVQPGVLSGEILSGVCVSQCKAHFYLENTGLCEACHDS 673

Query: 670 KIVSIHPLIDPMLKETQGVIIYQEQV-MQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQ 728
            +      +D         ++       +            +             + D  
Sbjct: 674 CLGCQGKSLDNCTSCIPSQVLLDGHCFPKCPDGFFNLEGICSVCHPSCRQCYGPTDSDCI 733

Query: 729 KERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFL 788
                S         +     +  L  +              + +  +  +        L
Sbjct: 734 SCHPHSLLVSGTCRTSCEEEQYLNLVGYCVDCHPLCQQCVADLHNTGSICLSCQNARYLL 793

Query: 789 AASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
                 +         F  +        +          F 
Sbjct: 794 LG----DHCVPSCPMGFYAENGACKRCHLSCKTCHGAGPFS 830


>gi|307297547|ref|ZP_07577353.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916807|gb|EFN47189.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 256

 Score = 40.2 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  + GVG   A+ I+E  A   PF S ED   RV    +  + + +L
Sbjct: 206 LCGLPGVGPVIAKRIVEFRASFGPFRSYEDL-ERV--SGIGEKTIANL 250


>gi|282932465|ref|ZP_06337890.1| ComE operon protein 1 [Lactobacillus jensenii 208-1]
 gi|281303414|gb|EFA95591.1| ComE operon protein 1 [Lactobacillus jensenii 208-1]
          Length = 216

 Score = 40.2 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 4/40 (10%)

Query: 844 GVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVL 882
           GVG   A  I+     + PF S+ED         +  + L
Sbjct: 171 GVGQKKAEQIVAYREQNGPFKSVEDL---TKVSGIGEKTL 207


>gi|260664602|ref|ZP_05865454.1| competence protein ComEA [Lactobacillus jensenii SJ-7A-US]
 gi|260561667|gb|EEX27639.1| competence protein ComEA [Lactobacillus jensenii SJ-7A-US]
          Length = 216

 Score = 40.2 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 4/40 (10%)

Query: 844 GVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVL 882
           GVG   A  I+     + PF S+ED         +  + L
Sbjct: 171 GVGQKKAEQIVAYREQNGPFKSVEDL---TKVSGIGEKTL 207


>gi|238855242|ref|ZP_04645561.1| ComE operon protein 1 [Lactobacillus jensenii 269-3]
 gi|238832134|gb|EEQ24452.1| ComE operon protein 1 [Lactobacillus jensenii 269-3]
          Length = 217

 Score = 40.2 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 4/40 (10%)

Query: 844 GVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVL 882
           GVG   A  I+     + PF S+ED         +  + L
Sbjct: 172 GVGQKKAEQIVAYREQNGPFKSVEDL---TKVSGIGEKTL 208


>gi|332176512|gb|AEE12202.1| aspartyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707]
          Length = 580

 Score = 40.2 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 6/54 (11%), Positives = 15/54 (27%), Gaps = 5/54 (9%)

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                      A+  G  + LA  V   ++        + ++   +     +  F
Sbjct: 2    YRTHTCGALRASDEGQQVTLAGWVAKIRRMG-----AMTFLDLRDRYGITQIFF 50


>gi|81299654|ref|YP_399862.1| phosphoesterase PHP-like [Synechococcus elongatus PCC 7942]
 gi|81168535|gb|ABB56875.1| Phosphoesterase PHP-like [Synechococcus elongatus PCC 7942]
          Length = 236

 Score = 40.2 bits (92), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +H++ S  +G L    ++++  A     +AITD +     +   + ACA
Sbjct: 41 HLHTTCS--DGKLQPREVMEQAIAIGLRGLAITDHHG----VRGYEAACA 84


>gi|300176945|emb|CBK25514.2| unnamed protein product [Blastocystis hominis]
          Length = 274

 Score = 40.2 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/85 (12%), Positives = 28/85 (32%), Gaps = 3/85 (3%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
           +H+++S  +G  +   +++         + I D + +   L   +     GI  + G +
Sbjct: 2  HMHTNFS--DGVKTPAELIEYAKQRHVDIMCINDHDTVKGVLN-VKTMKVEGITVMYGIE 58

Query: 75 LDIDMQDNLKMTNQGKTPFPTVPSI 99
          L     +                S+
Sbjct: 59 LSTTWNNKSLHVAGYFPKDADFESL 83


>gi|298244345|ref|ZP_06968151.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297551826|gb|EFH85691.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 286

 Score = 40.2 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L +H++YS  +G  S   +L  +A +    IA+TD +
Sbjct: 13 LHMHTTYS--DGRWSAEELLAYVAQEGFDVIAVTDHD 47


>gi|258544541|ref|ZP_05704775.1| competence protein CelA [Cardiobacterium hominis ATCC 15826]
 gi|258520215|gb|EEV89074.1| competence protein CelA [Cardiobacterium hominis ATCC 15826]
          Length = 158

 Score = 40.2 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A  I+    A   F ++E+     + K + +  LE L
Sbjct: 34  LQTLKGIGAKKAADIIAYREAHGGFKNVEELL---NVKGVGKATLEKL 78


>gi|87301696|ref|ZP_01084536.1| lysyl-tRNA synthetase [Synechococcus sp. WH 5701]
 gi|87283913|gb|EAQ75867.1| lysyl-tRNA synthetase [Synechococcus sp. WH 5701]
          Length = 506

 Score = 40.2 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 5/60 (8%), Positives = 21/60 (35%), Gaps = 10/60 (16%)

Query: 973  PILRKMGIKGYEESVA-TIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
              L+++    + +      R   + +A  V++++        ++ + T  +     +   
Sbjct: 39   AELQRL----HADLANGQERDERVSVAGRVMTRRVMG-----KLAFFTLLDETGPIQLFI 89


>gi|331091402|ref|ZP_08340241.1| hypothetical protein HMPREF9477_00884 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330404266|gb|EGG83813.1| hypothetical protein HMPREF9477_00884 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 241

 Score = 40.2 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 31/87 (35%)

Query: 15 QVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDT--------NNLFSALEFSQK 61
            H+     +YS      ++  +    A  +  A+AIT+          N +    FS  
Sbjct: 8  HSHTIASGHAYS------TIREMAKAAAEKELSALAITEHAPAMPETCGNFY----FSN- 56

Query: 62 ACA------AGIQPIIGCQLDIDMQDN 82
                    G+  + G +L+I  ++ 
Sbjct: 57 -LKVIPRTMYGVNLLFGVELNILDEEG 82


>gi|319789141|ref|YP_004150774.1| ATP-dependent DNA helicase RecG [Thermovibrio ammonificans HB-1]
 gi|317113643|gb|ADU96133.1| ATP-dependent DNA helicase RecG [Thermovibrio ammonificans HB-1]
          Length = 817

 Score = 40.2 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 15/57 (26%)

Query: 975  LRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
             R        +           +   V +  Q KT+ G  +  VT  +        F
Sbjct: 158  FRYEDRTTVTKMAQLKPDREQLVKGKVTAISQIKTKNGKELLKVTLYDKTGAVSLIF 214


>gi|313885986|ref|ZP_07819724.1| aspartate--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924516|gb|EFR35287.1| aspartate--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 580

 Score = 40.2 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 6/54 (11%), Positives = 15/54 (27%), Gaps = 5/54 (9%)

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                      A+  G  + LA  V   ++        + ++   +     +  F
Sbjct: 2    YRTHTCGALRASDEGQQVTLAGWVAKIRRMG-----AMTFLDLRDRYGITQIFF 50


>gi|297568783|ref|YP_003690127.1| PHP domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296924698|gb|ADH85508.1| PHP domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 223

 Score = 40.2 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 10/71 (14%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT---NNL-FSALEFSQKACAAG--- 66
          L  H  +S  +G L     L ++A     A+AITD    +NL F      Q A       
Sbjct: 4  LHTHCLFS--DGELVPAEHLRRVAVLGYQAVAITDHADSSNLDFIIPRLVQAAERLNPHS 61

Query: 67 -IQPIIGCQLD 76
            Q I G +L 
Sbjct: 62 SAQLIPGIELT 72


>gi|317490550|ref|ZP_07949026.1| comEA protein [Eggerthella sp. 1_3_56FAA]
 gi|316910330|gb|EFV31963.1| comEA protein [Eggerthella sp. 1_3_56FAA]
          Length = 226

 Score = 40.2 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNR-RVLESLVFAG 889
           L A+ GVG +TA  I+    A+ PF ++ED   RV      +   L  LV  G
Sbjct: 175 LDALPGVGPSTAEKIVADREANGPFRTVEDL-KRVSGIGDKKFADLADLVCVG 226


>gi|257791408|ref|YP_003182014.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Eggerthella lenta DSM 2243]
 gi|325831532|ref|ZP_08164786.1| comEA protein [Eggerthella sp. HGA1]
 gi|257475305|gb|ACV55625.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Eggerthella lenta DSM 2243]
 gi|325486786|gb|EGC89234.1| comEA protein [Eggerthella sp. HGA1]
          Length = 226

 Score = 40.2 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNR-RVLESLVFAG 889
           L A+ GVG +TA  I+    A+ PF ++ED   RV      +   L  LV  G
Sbjct: 175 LDALPGVGPSTAEKIVADREANGPFRTVEDL-KRVSGIGDKKFADLADLVCVG 226


>gi|154151849|ref|YP_001405467.1| hypothetical protein Mboo_2310 [Candidatus Methanoregula boonei
           6A8]
 gi|154000401|gb|ABS56824.1| PHP C-terminal domain protein [Methanoregula boonei 6A8]
          Length = 217

 Score = 40.2 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 13/96 (13%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT----NNLFSALEFS----QKACAA 65
           L  H+   L +G +    ++ ++A      +AITD     N +   ++      + A   
Sbjct: 7   LHTHTI--LSDGEMLPTELVRRMAVIGYTTVAITDHVDTSNAVS-VVKTLLDVQESARLF 63

Query: 66  GIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL 101
           G++ + G ++       +      +        IV+
Sbjct: 64  GVRLLCGVEITHVPPSQI--AAVARQARDAGAEIVV 97


>gi|149919633|ref|ZP_01908112.1| PHP-like protein [Plesiocystis pacifica SIR-1]
 gi|149819576|gb|EDM79004.1| PHP-like protein [Plesiocystis pacifica SIR-1]
          Length = 743

 Score = 40.2 bits (92), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+  +  +G  SL ++  K AA     IAITD 
Sbjct: 347 LHMHT--TDSDGRGSLRDMAAKAAALGHRYIAITDH 380


>gi|319786692|ref|YP_004146167.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317465204|gb|ADV26936.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 125

 Score = 39.8 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 7/50 (14%)

Query: 844 GVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES---LVFAG 889
           G+G   A  I+     + PF S ++       K +  + +E    L+  G
Sbjct: 46  GIGPAKAEAIVAHRKANGPFKSADELAL---VKGIGLKTIERNRDLITVG 92


>gi|259417166|ref|ZP_05741085.1| PHP C- domain protein [Silicibacter sp. TrichCH4B]
 gi|259346072|gb|EEW57886.1| PHP C- domain protein [Silicibacter sp. TrichCH4B]
          Length = 309

 Score = 39.8 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS  S  +GAL    +  +  A     I++TD 
Sbjct: 17 LHTHSDVS--DGALPPAEVCRRYKAQGYDFISLTDH 50


>gi|88603655|ref|YP_503833.1| DNA polymerase II small subunit [Methanospirillum hungatei JF-1]
 gi|88189117|gb|ABD42114.1| DNA polymerase II small subunit [Methanospirillum hungatei JF-1]
          Length = 474

 Score = 39.8 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 21/86 (24%), Gaps = 23/86 (26%)

Query: 964  SGHPLDVYKPILRKMGIKGYEESVATIRGN------------------NIRLAAMVVSKQ 1005
            S  P+   +  +       Y      IRG                      +  MV+  +
Sbjct: 81   SARPVAKVEDYIAYFAD-RYSRLSGMIRGRCNPVPIEALKRNTRYKQEEFSVCGMVMDVR 139

Query: 1006 QKKTRKGSRIGWVTFSEPAKEYEANF 1031
                  G R+  V   +P       F
Sbjct: 140  STG--NGHRM--VELEDPTGSVNVLF 161


>gi|308235732|ref|ZP_07666469.1| aspartyl-tRNA synthetase [Gardnerella vaginalis ATCC 14018]
 gi|311114716|ref|YP_003985937.1| aspartate--tRNA ligase [Gardnerella vaginalis ATCC 14019]
 gi|310946210|gb|ADP38914.1| aspartate--tRNA ligase [Gardnerella vaginalis ATCC 14019]
          Length = 598

 Score = 39.8 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 7/56 (12%), Positives = 17/56 (30%), Gaps = 5/56 (8%)

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                    E   T+ G N+ +A  V  ++         + +V   +     +   +
Sbjct: 5    AYRTHHAVEVTETLVGQNVTIAGWVDRRRDHG-----GVAFVDVRDNTGLVQVVIY 55


>gi|302874283|ref|YP_003842916.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Clostridium cellulovorans 743B]
 gi|307689454|ref|ZP_07631900.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Clostridium cellulovorans 743B]
 gi|302577140|gb|ADL51152.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Clostridium cellulovorans 743B]
          Length = 249

 Score = 39.8 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLE 883
           L ++KG+G T +  I+E    + PF ++E+     +   +  +  E
Sbjct: 198 LMSLKGIGETYSEKIIEYREKNGPFKTIEELK---NVSGIGEKTFE 240


>gi|228470504|ref|ZP_04055371.1| aspartyl-tRNA synthetase [Porphyromonas uenonis 60-3]
 gi|228307800|gb|EEK16756.1| aspartyl-tRNA synthetase [Porphyromonas uenonis 60-3]
          Length = 580

 Score = 39.8 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 6/54 (11%), Positives = 15/54 (27%), Gaps = 5/54 (9%)

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                      A+  G  + LA  V   ++        + ++   +     +  F
Sbjct: 2    YRTHTCGALRASDEGQQVTLAGWVAKIRRMG-----AMTFLDLRDRYGITQIFF 50


>gi|212710705|ref|ZP_03318833.1| hypothetical protein PROVALCAL_01772 [Providencia alcalifaciens
          DSM 30120]
 gi|212686402|gb|EEB45930.1| hypothetical protein PROVALCAL_01772 [Providencia alcalifaciens
          DSM 30120]
          Length = 307

 Score = 39.8 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSAL--EFSQK 61
          L  H++ S  +G L+   ++++        ++ITD +     +       
Sbjct: 31 LHSHTNAS--DGDLTPAELVERAIVMGVNVLSITDHDTCDGVIAARAYLA 78


>gi|269926773|ref|YP_003323396.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269790433|gb|ACZ42574.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 206

 Score = 39.8 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 5/46 (10%)

Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
           G+G + A  I+E      PF+SLED     D   +    LE+ + +
Sbjct: 160 GIGPSKAAAIIEFRQKHGPFNSLEDLL---DVPGIGPSTLEN-IKS 201


>gi|302876714|ref|YP_003845347.1| histidinol phosphate phosphatase HisJ family [Clostridium
          cellulovorans 743B]
 gi|307687390|ref|ZP_07629836.1| histidinol phosphate phosphatase HisJ family protein [Clostridium
          cellulovorans 743B]
 gi|302579571|gb|ADL53583.1| histidinol phosphate phosphatase HisJ family [Clostridium
          cellulovorans 743B]
          Length = 278

 Score = 39.8 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 4/33 (12%), Positives = 7/33 (21%), Gaps = 4/33 (12%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIA 45
          H          +G       + +       AI 
Sbjct: 7  HTHCR----FCDGIGEPEEYVKRAIELGFDAIG 35


>gi|117617708|ref|YP_857858.1| lysyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila ATCC
            7966]
 gi|166229790|sp|A0KNK7|SYK_AERHH RecName: Full=Lysyl-tRNA synthetase; AltName: Full=Lysine--tRNA
            ligase; Short=LysRS
 gi|117559115|gb|ABK36063.1| lysyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila ATCC
            7966]
          Length = 511

 Score = 39.8 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 12/70 (17%)

Query: 967  PLDVYKPIL-----RKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFS 1021
            P D  +  L      + G K  +E  A   G  +++A  +++++           + T  
Sbjct: 38   PNDFRRDSLSGDLHAEFGDKSADELAAL--GKRVKIAGRIMTRRIMGKAS-----FATLQ 90

Query: 1022 EPAKEYEANF 1031
            + A + +   
Sbjct: 91   DMAGKIQVYV 100


>gi|113955017|ref|YP_729353.1| lysyl-tRNA synthetase [Synechococcus sp. CC9311]
 gi|123132786|sp|Q0IDW9|SYK_SYNS3 RecName: Full=Lysyl-tRNA synthetase; AltName: Full=Lysine--tRNA
            ligase; Short=LysRS
 gi|113882368|gb|ABI47326.1| lysyl-tRNA synthetase [Synechococcus sp. CC9311]
          Length = 489

 Score = 39.8 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 6/74 (8%), Positives = 24/74 (32%), Gaps = 13/74 (17%)

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGW 1017
             L F  +          + ++     + +    R   + +A  V++++        ++ +
Sbjct: 24   ALRFDLT--------DRMARLQADHADLAKGAERDLKVSVAGRVMTRRVMG-----KLAF 70

Query: 1018 VTFSEPAKEYEANF 1031
             T ++     +   
Sbjct: 71   FTLADETGTIQLFL 84


>gi|15679325|ref|NP_276442.1| hypothetical protein MTH1325 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622431|gb|AAB85803.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 193

 Score = 39.8 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV-----DSKKLNRRVL 882
           L  + G+G      I++A  +KPF+S ED  +RV       K + RRVL
Sbjct: 118 LELLPGIGKKHMWDILKAREEKPFESFEDIKNRVPMLSDPVKLIVRRVL 166


>gi|312871443|ref|ZP_07731538.1| comEA protein [Lactobacillus iners LEAF 3008A-a]
 gi|311093096|gb|EFQ51445.1| comEA protein [Lactobacillus iners LEAF 3008A-a]
          Length = 210

 Score = 39.8 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 4/43 (9%)

Query: 844 GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
           G+G   A  I+E       F S++D         +  + +E L
Sbjct: 165 GIGQKRAEQIIECRERIGGFKSIDDLKQ---VSGIGVKTIEKL 204


>gi|312875489|ref|ZP_07735492.1| comEA protein [Lactobacillus iners LEAF 2053A-b]
 gi|311089000|gb|EFQ47441.1| comEA protein [Lactobacillus iners LEAF 2053A-b]
          Length = 210

 Score = 39.8 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 4/43 (9%)

Query: 844 GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
           G+G   A  I+E       F S++D         +  + +E L
Sbjct: 165 GIGQKRAEQIIECRERIGGFKSIDDLKQ---VSGIGVKTIEKL 204


>gi|309807975|ref|ZP_07701902.1| comEA protein [Lactobacillus iners LactinV 01V1-a]
 gi|325912858|ref|ZP_08175236.1| comEA protein [Lactobacillus iners UPII 60-B]
 gi|329921314|ref|ZP_08277752.1| comEA protein [Lactobacillus iners SPIN 1401G]
 gi|308168783|gb|EFO70874.1| comEA protein [Lactobacillus iners LactinV 01V1-a]
 gi|325477851|gb|EGC80985.1| comEA protein [Lactobacillus iners UPII 60-B]
 gi|328934606|gb|EGG31110.1| comEA protein [Lactobacillus iners SPIN 1401G]
          Length = 210

 Score = 39.8 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 4/43 (9%)

Query: 844 GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
           G+G   A  I+E       F S++D         +  + +E L
Sbjct: 165 GIGQKRAEQIIECRERIGGFKSIDDLKQ---VSGIGVKTIEKL 204


>gi|309807246|ref|ZP_07701218.1| comEA protein [Lactobacillus iners LactinV 03V1-b]
 gi|308166384|gb|EFO68591.1| comEA protein [Lactobacillus iners LactinV 03V1-b]
          Length = 172

 Score = 39.8 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 4/43 (9%)

Query: 844 GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
           G+G   A  I+E       F S++D         +  + +E L
Sbjct: 127 GIGQKRAEQIIECRERIGGFKSIDDLKQ---VSGIGVKTIEKL 166


>gi|309805335|ref|ZP_07699385.1| comEA protein [Lactobacillus iners LactinV 09V1-c]
 gi|309809259|ref|ZP_07703128.1| comEA protein [Lactobacillus iners SPIN 2503V10-D]
 gi|312873936|ref|ZP_07733972.1| comEA protein [Lactobacillus iners LEAF 2052A-d]
 gi|325911492|ref|ZP_08173903.1| comEA protein [Lactobacillus iners UPII 143-D]
 gi|308165335|gb|EFO67568.1| comEA protein [Lactobacillus iners LactinV 09V1-c]
 gi|308170372|gb|EFO72396.1| comEA protein [Lactobacillus iners SPIN 2503V10-D]
 gi|311090485|gb|EFQ48893.1| comEA protein [Lactobacillus iners LEAF 2052A-d]
 gi|325476692|gb|EGC79847.1| comEA protein [Lactobacillus iners UPII 143-D]
          Length = 210

 Score = 39.8 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 4/43 (9%)

Query: 844 GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
           G+G   A  I+E       F S++D         +  + +E L
Sbjct: 165 GIGQKRAEQIIECRERIGGFKSIDDLKQ---VSGIGVKTIEKL 204


>gi|309803976|ref|ZP_07698059.1| comEA protein [Lactobacillus iners LactinV 11V1-d]
 gi|308163978|gb|EFO66242.1| comEA protein [Lactobacillus iners LactinV 11V1-d]
          Length = 210

 Score = 39.8 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 4/43 (9%)

Query: 844 GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
           G+G   A  I+E       F S++D         +  + +E L
Sbjct: 165 GIGQKRAEQIIECRERIGGFKSIDDLKQ---VSGIGVKTIEKL 204


>gi|302191383|ref|ZP_07267637.1| competence protein [Lactobacillus iners AB-1]
 gi|312872294|ref|ZP_07732364.1| comEA protein [Lactobacillus iners LEAF 2062A-h1]
 gi|311092117|gb|EFQ50491.1| comEA protein [Lactobacillus iners LEAF 2062A-h1]
          Length = 210

 Score = 39.8 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 4/43 (9%)

Query: 844 GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
           G+G   A  I+E       F S++D         +  + +E L
Sbjct: 165 GIGQKRAEQIIECRERIGGFKSIDDLKQ---VSGIGVKTIEKL 204


>gi|259500693|ref|ZP_05743595.1| competence protein CelA [Lactobacillus iners DSM 13335]
 gi|315653472|ref|ZP_07906393.1| competence protein CelA [Lactobacillus iners ATCC 55195]
 gi|259168077|gb|EEW52572.1| competence protein CelA [Lactobacillus iners DSM 13335]
 gi|315489163|gb|EFU78804.1| competence protein CelA [Lactobacillus iners ATCC 55195]
          Length = 213

 Score = 39.8 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 4/43 (9%)

Query: 844 GVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
           G+G   A  I+E       F S++D         +  + +E L
Sbjct: 168 GIGQKRAEQIIECRERIGGFKSIDDLKQ---VSGIGVKTIEKL 207


>gi|297243417|ref|ZP_06927350.1| DNA uptake protein [Gardnerella vaginalis AMD]
 gi|296888664|gb|EFH27403.1| DNA uptake protein [Gardnerella vaginalis AMD]
          Length = 273

 Score = 39.8 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDF--CSRVDSKKLNR 879
           L  +KG+G  TA  I+        F SLED      + SK LN+
Sbjct: 222 LQTLKGIGPKTAARIIAQRKKVGYFRSLEDLMQIKGIGSKTLNK 265


>gi|284165662|ref|YP_003403941.1| hypothetical protein Htur_2390 [Haloterrigena turkmenica DSM 5511]
 gi|284015317|gb|ADB61268.1| Protein of unknown function DUF655 [Haloterrigena turkmenica DSM
           5511]
          Length = 202

 Score = 39.8 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 5/52 (9%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV-----DSKKLNRRVLESL 885
           L  + G+G      I++    KPF+S E+   RV       + L  R+LE L
Sbjct: 131 LNLLPGIGKKLRNSILDERKRKPFESFEELSERVSGLHDPDEILVERILEEL 182


>gi|320156840|ref|YP_004189219.1| putative metal-dependent phosphoesterases (PHP family) [Vibrio
          vulnificus MO6-24/O]
 gi|319932152|gb|ADV87016.1| predicted metal-dependent phosphoesterases (PHP family) [Vibrio
          vulnificus MO6-24/O]
          Length = 293

 Score = 39.8 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L  H++ S  +G  S   ++++        +A+TD + +
Sbjct: 5  LHSHTTAS--DGRFSPQELIERALTLDLDVLAVTDHDTV 41


>gi|114331866|ref|YP_748088.1| 5,10-methylenetetrahydrofolate reductase [Nitrosomonas eutropha
           C91]
 gi|114308880|gb|ABI60123.1| 5,10-methylenetetrahydrofolate reductase [Nitrosomonas eutropha
           C91]
          Length = 284

 Score = 39.8 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 133 LSWLQEIGTE---GLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            S L++  +     +I L G     + +A      + A + +   +K FGD  ++ +  +
Sbjct: 85  RSILEKYHSHNIRHIIALRGDLPSGMAQA---GEFRYANELVAFIRKEFGDTFWIEVAAY 141

Query: 190 RGYDRYRESQVVQL 203
             Y     S +   
Sbjct: 142 PEYHPQARSALEDF 155


>gi|160872600|ref|ZP_02062732.1| competence protein ComEA helix-hairpin-helix region [Rickettsiella
           grylli]
 gi|159121399|gb|EDP46737.1| competence protein ComEA helix-hairpin-helix region [Rickettsiella
           grylli]
          Length = 111

 Score = 39.8 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 4/42 (9%)

Query: 842 IKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVL 882
           +KG+G   A+ I+       PF S++D       K++++R++
Sbjct: 64  LKGIGIKRAKAIIAYRDVHGPFKSIDDLIK---IKEISKRIV 102


>gi|149378305|ref|ZP_01896014.1| ComE operon protein [Marinobacter algicola DG893]
 gi|149357412|gb|EDM45925.1| ComE operon protein [Marinobacter algicola DG893]
          Length = 89

 Score = 39.8 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883
           LA++ G+G + A  I+    A+ PF S  D     + K +  R +E
Sbjct: 38  LASLNGIGQSKAEAIVAYRDANGPFQSRNDL---TNVKGIGERTVE 80


>gi|259908327|ref|YP_002648683.1| Protein TrpH [Erwinia pyrifoliae Ep1/96]
 gi|224963949|emb|CAX55454.1| Protein TrpH [Erwinia pyrifoliae Ep1/96]
 gi|283478265|emb|CAY74181.1| Protein trpH [Erwinia pyrifoliae DSM 12163]
          Length = 303

 Score = 39.8 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 10/121 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H+  S  +G L+   ++ +    +   +AITD +         +        ++ + 
Sbjct: 16  LHSHTRAS--DGLLTPEQLVLRAVQQRVGVLAITDHDTTDGIAPAREAVTRHQLPLRLVD 73

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G ++    +++                + LL   A+  +RL        L+ +  +   I
Sbjct: 74  GVEISTLWENHEIHIVGLGIDIAHPQMVALLA--AQAERRLAR----ARLIAERLEKAHI 127

Query: 132 C 132
            
Sbjct: 128 P 128


>gi|146296211|ref|YP_001179982.1| putative hydrolase [Caldicellulosiruptor saccharolyticus DSM
          8903]
 gi|257096841|sp|A4XIQ6|Y1188_CALS8 RecName: Full=Putative hydrolase Csac_1188
 gi|145409787|gb|ABP66791.1| PHP C-terminal domain protein [Caldicellulosiruptor
          saccharolyticus DSM 8903]
          Length = 239

 Score = 39.8 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 11/44 (25%)

Query: 12 VHLQVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          V    H+     +Y       +L  ++ +        I ITD  
Sbjct: 5  VETHCHTIASGHAY------NTLEEMVAEAKNKGLKGICITDHG 42


>gi|298377902|ref|ZP_06987851.1| ABC transporter [Bacteroides sp. 3_1_19]
 gi|298265146|gb|EFI06810.1| ABC transporter [Bacteroides sp. 3_1_19]
          Length = 982

 Score = 39.8 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-AGIQPIIG 72
          L +H+  S  +G  +   IL + AA +   IA+TD + + + ++  +       I+ I G
Sbjct: 14 LHIHTDAS--DGKGTCEEILKEAAAKKISCIAVTDHHTVAN-IDIMKSLAEPMKIKVISG 70

Query: 73 CQLDIDMQ 80
           +   +  
Sbjct: 71 VEFRTEYG 78


>gi|220907422|ref|YP_002482733.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Cyanothece sp. PCC 7425]
 gi|219864033|gb|ACL44372.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Cyanothece sp. PCC 7425]
          Length = 585

 Score = 39.8 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
           L A+ G+G  TA+ ++ A ++KPF SL+D  +      +   VLE
Sbjct: 536 LDALPGIGPKTAKAMIAARSEKPFASLDDLDA---VPGIGPSVLE 577


>gi|117165216|emb|CAJ88773.1| putative metal-dependent phosphoesterase (PHP family)
          [Streptomyces ambofaciens ATCC 23877]
          Length = 310

 Score = 39.8 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS+ S  +GALS    L          +A+TD 
Sbjct: 17 LHTHSNRS--DGALSPEESLRHYRDAGYDFVALTDH 50


>gi|312602648|ref|YP_004022493.1| DNA polymerase III subunit alpha [Burkholderia rhizoxinica HKI 454]
 gi|312169962|emb|CBW76974.1| DNA polymerase III alpha subunit (EC 2.7.7.7) [Burkholderia
           rhizoxinica HKI 454]
          Length = 153

 Score = 39.8 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 44/93 (47%)

Query: 498 FREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQ 557
            R        +++   ++  L G  RH S H+ G VI     S+LVP+      D  V Q
Sbjct: 40  CRRIFERALIIEQWATLAATLLGFPRHLSQHSGGFVISRGKPSRLVPIESAAMPDRSVIQ 99

Query: 558 FNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLA 590
           ++   I+   L+K D L L  L +++++L  +A
Sbjct: 100 WDKNDIDALELLKIDILALGMLPVIRRALALVA 132


>gi|255524344|ref|ZP_05391302.1| PHP domain protein [Clostridium carboxidivorans P7]
 gi|296185299|ref|ZP_06853709.1| PHP domain protein [Clostridium carboxidivorans P7]
 gi|255512027|gb|EET88309.1| PHP domain protein [Clostridium carboxidivorans P7]
 gi|296050133|gb|EFG89557.1| PHP domain protein [Clostridium carboxidivorans P7]
          Length = 256

 Score = 39.8 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 6/38 (15%)

Query: 14 LQVHSSYSLL--EGALSLNNILDKIAADQQPAIAITDT 49
          L  H+    L  +G  S   I++        AI I+D 
Sbjct: 11 LHNHT----LWSDGIHSPEKIIENAIEHNLTAIGISDH 44


>gi|269955578|ref|YP_003325367.1| PHP domain-containing protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304259|gb|ACZ29809.1| PHP domain protein [Xylanimonas cellulosilytica DSM 15894]
          Length = 279

 Score = 39.8 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 16/168 (9%)

Query: 47  TDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL-LVST 105
           TD +      E ++ A   G+  + G ++     D++ +        PT   +V  L  T
Sbjct: 35  TDHDTAAGWDEAAEAAARTGVALVRGAEIS-TTSDHISVHMLAYLHDPTHAELVGELERT 93

Query: 106 AEGYQRLIELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQ 165
                RL  L     LL +      I    +     E   +     +  +  A    +  
Sbjct: 94  RA--SRLTRLERMAALLGEDY---PITWEDVLAHTGEDATVGRPHLADALVAAGVVGTRD 148

Query: 166 VAEKRLLTFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHELPLVA 213
            A   +L      G R YV    H   D     +V++ A    +P+ A
Sbjct: 149 EAFATMLR----SGTRYYV---PHTAPDSVTAVRVIRAAG--GVPVFA 187


>gi|297567550|ref|YP_003686522.1| helix-hairpin-helix motif protein [Meiothermus silvanus DSM 9946]
 gi|296851999|gb|ADH65014.1| helix-hairpin-helix motif protein [Meiothermus silvanus DSM 9946]
          Length = 111

 Score = 39.8 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  + G+G   AR I+E     P+ S++D       + +    LE L
Sbjct: 65  LDTLPGIGPALARRIIEGR---PYSSVDDLLR---VRGIGEHTLERL 105


>gi|269926497|ref|YP_003323120.1| putative transcriptional regulator [Thermobaculum terrenum ATCC
          BAA-798]
 gi|269790157|gb|ACZ42298.1| putative transcriptional regulator [Thermobaculum terrenum ATCC
          BAA-798]
          Length = 586

 Score = 39.8 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 14 LQVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEF 58
          L +H+      Y  L+  +   +IL K A  Q  AIAITD N +    EF
Sbjct: 17 LHIHTPASSLCY--LDKNVRFIDILRKTAEKQLDAIAITDHNTVVGIAEF 64


>gi|254412866|ref|ZP_05026639.1| hypothetical protein MC7420_1510 [Microcoleus chthonoplastes PCC
          7420]
 gi|196180601|gb|EDX75592.1| hypothetical protein MC7420_1510 [Microcoleus chthonoplastes PCC
          7420]
          Length = 235

 Score = 39.8 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H++ S  +G L    ++++  A      AITD 
Sbjct: 41 HCHTTAS--DGQLYPKTLIEQAIAIGLKGFAITDH 73


>gi|195977787|ref|YP_002123031.1| DNA receptor late competence protein ComEA [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195974492|gb|ACG62018.1| DNA receptor late competence protein ComEA [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 225

 Score = 39.8 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  I G+G   A+ I++       F SLED   +V    +  + LE L
Sbjct: 174 LQRISGIGAKRAQDIIDVRESLGGFKSLEDL-RKVP--GIGAKTLEKL 218


>gi|171743322|ref|ZP_02919129.1| hypothetical protein BIFDEN_02453 [Bifidobacterium dentium ATCC
            27678]
 gi|306823267|ref|ZP_07456643.1| aspartate--tRNA ligase [Bifidobacterium dentium ATCC 27679]
 gi|309801923|ref|ZP_07696038.1| aspartate--tRNA ligase [Bifidobacterium dentium JCVIHMP022]
 gi|171278936|gb|EDT46597.1| hypothetical protein BIFDEN_02453 [Bifidobacterium dentium ATCC
            27678]
 gi|304553899|gb|EFM41810.1| aspartate--tRNA ligase [Bifidobacterium dentium ATCC 27679]
 gi|308221479|gb|EFO77776.1| aspartate--tRNA ligase [Bifidobacterium dentium JCVIHMP022]
          Length = 599

 Score = 39.8 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 5/56 (8%), Positives = 15/56 (26%), Gaps = 5/56 (8%)

Query: 977  KMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANFF 1032
                    E    + G  + LA  V  ++         + ++   +     +   +
Sbjct: 5    AYRTHHATEVTEELVGQKVTLAGWVDRRRDHG-----GVAFIDLRDNTGLVQVVIY 55


>gi|37679407|ref|NP_934016.1| metal-dependent phosphoesterase [Vibrio vulnificus YJ016]
 gi|37198150|dbj|BAC93987.1| predicted metal-dependent phosphoesterase [Vibrio vulnificus
          YJ016]
          Length = 293

 Score = 39.8 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L  H++ S  +G  S   ++++        +A+TD + +
Sbjct: 5  LHSHTTAS--DGRFSPQELIERALTFNLDVLAVTDHDTV 41


>gi|207110409|ref|ZP_03244571.1| DNA polymerase III subunit alpha [Helicobacter pylori HPKX_438_CA4C1]
          Length = 79

 Score = 39.8 bits (91), Expect = 2.6,   Method: Composition-based stats.
 Identities = 7/56 (12%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRK-GSRIGWVTFSEPAKEYEANFF 1032
              +    +      G+   L   ++  ++K  ++ G   G     +   ++E   F
Sbjct: 2    KNLVKSIDIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLF 57


>gi|114883631|ref|YP_740321.1| hypothetical protein pLB1_p23 [Plasmid pLB1]
 gi|113734272|dbj|BAF30448.1| hypothetical protein [Plasmid pLB1]
          Length = 935

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 31 NILDKIAADQQPAIAITDTNNLFSALEFSQKACAA 65
           ++         AIAITD + +   + F ++A A 
Sbjct: 39 KLVAACRERGIQAIAITDHHCMT-FVPFIRQAAAE 72


>gi|257459354|ref|ZP_05624466.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Campylobacter gracilis RM3268]
 gi|257443247|gb|EEV18378.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Campylobacter gracilis RM3268]
          Length = 155

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 8/82 (9%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYSR 898
           L A+ G+G   A+ I++   D  F  +ED     + K +  +  E L+     D    S 
Sbjct: 31  LMALPGIGEAKAQAIIDYRKDNKFKDIEDIK---NIKGIGDKRFE-LIK----DDLAVSG 82

Query: 899 MQLLQSLDNIQKYAQWVEKNRT 920
              +  L ++++ A    K+  
Sbjct: 83  TTDISDLKSVKQKASKKAKDTA 104


>gi|156354190|ref|XP_001623283.1| predicted protein [Nematostella vectensis]
 gi|156209966|gb|EDO31183.1| predicted protein [Nematostella vectensis]
          Length = 395

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/312 (7%), Positives = 61/312 (19%), Gaps = 20/312 (6%)

Query: 550 RSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETY 609
                +         +   I++    ++      +      +              ++ +
Sbjct: 31  YQGHTMCYQGHTMCYQGHTIRYQGHTMRYQGHTIRCQGHFMRYQGHTMCYQGHNMRYQGH 90

Query: 610 HLLTTKGTLGIFQLESSGMRQALEGMQPDCI----EDIIALVSLYRPGPIDNIVVYNNRK 665
            +     T+  +Q  +   +      Q   +      +       R    +     +  +
Sbjct: 91  TMCYQGHTMR-YQGHTMRYQGHTMRYQGHTMCYQGHTMCYQGHTMRYQGYNMRYQGHTMR 149

Query: 666 NGKEKIVSIHPLIDPMLK------ETQ----GVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
                +      +            T       + YQ   M+       Y          
Sbjct: 150 YQGHTMRYQGHTMRYQGHTMRYQGHTMRFQGHTMCYQGHTMRHRGHTICYQGHTMRYHGH 209

Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY----AV 771
            M +     M  Q                        +     +   + H   Y      
Sbjct: 210 TM-RYQGHTMCYQGHTMCYQGHTMRYQGHTMRYQGHTIRCQGHFMRYQGHTMCYQGHNMR 268

Query: 772 ISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVG 831
               T   + H                  +            I++ P ++       +V 
Sbjct: 269 YQGHTMCYQGHTMRYQGHTMRYQGHTMRYQGHTMRYQGHTCAIRVTPCAIRVTPCGIRVT 328

Query: 832 DNRIYYSLAAIK 843
              I  +  AI+
Sbjct: 329 PCGIRVTPCAIR 340



 Score = 38.6 bits (88), Expect = 6.4,   Method: Composition-based stats.
 Identities = 23/348 (6%), Positives = 61/348 (17%), Gaps = 17/348 (4%)

Query: 500 EARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFN 559
                     R    +   +G       H                          +    
Sbjct: 20  HTIRYQGHTMRYQGHTMCYQGHTMCYQGHTIRYQGHTMRYQGHT----IRCQGHFMRYQG 75

Query: 560 MKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG 619
                +   +++    +       +      +              ++ + +     T+ 
Sbjct: 76  HTMCYQGHNMRYQGHTMCYQGHTMRYQGHTMRYQGHTMRYQGHTMCYQGHTMCYQGHTMR 135

Query: 620 IFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLID 679
            +Q  +   +      Q   +      +                + +             
Sbjct: 136 -YQGYNMRYQGHTMRYQGHTMRYQGHTM-------RYQGHTMRYQGHTMRFQGHTMCYQG 187

Query: 680 PMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKN 739
             ++     I YQ   M+       Y           M  +       Q           
Sbjct: 188 HTMRHRGHTICYQGHTMRYHGHTMRYQGHTMCYQGHTMCYQGHTMR-YQGHTMRYQGHTI 246

Query: 740 GISKTIAVNIFELLAKFADYGFNKSHAAAYAVISY----QTAWMKTHYPVEFLAASMTLE 795
                        +         + H   Y   +      T   + H             
Sbjct: 247 RCQGHFMRYQGHTMCYQGHNMRYQGHTMCYQGHTMRYQGHTMRYQGHTMRYQGHTMRYQG 306

Query: 796 MDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFKVGDNRIYYSLAAIK 843
                ++           I++ P  +       +V    I  +  AI+
Sbjct: 307 HTCAIRVTPCAIRVTPCGIRVTPCGIRVTPCAIRVTPCAIRVTPCAIR 354



 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 25/373 (6%), Positives = 71/373 (19%), Gaps = 10/373 (2%)

Query: 470 SQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYRHASTHA 529
               R          H +  Q      +         ++       +      R+   H 
Sbjct: 5   GHTMRYQGHTMRYQGHTIRYQGHTMRYQGHTMCYQGHTMCYQGHTIRYQGHTMRYQG-HT 63

Query: 530 AGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFL 589
                           Y+       +         +   +++    ++      +     
Sbjct: 64  IRCQGHFMRYQGHTMCYQ----GHNMRYQGHTMCYQGHTMRYQGHTMRYQGHTMRYQGHT 119

Query: 590 AQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSL 649
                           ++ Y++     T+  +Q  +   +      Q   +      +  
Sbjct: 120 MCYQGHTMCYQGHTMRYQGYNMRYQGHTMR-YQGHTMRYQGHTMRYQGHTMRYQGHTMRF 178

Query: 650 YRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSE 709
                        +R +               ++     + YQ   M        Y    
Sbjct: 179 QGHTMCYQGHTMRHRGHTICYQGHTMRYHGHTMRYQGHTMCYQGHTMCYQGHTMRYQGHT 238

Query: 710 ADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAY 769
                  +  +       Q                        +         + H   Y
Sbjct: 239 MRYQGHTIRCQGHFMR-YQGHTMCYQGHNMRYQGHTMCYQGHTMRYQGHTMRYQGHTMRY 297

Query: 770 AVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNIQIMPPSVNTPCVDFK 829
              + +    + H     +            ++           I++ P ++       +
Sbjct: 298 QGHTMR---YQGHTCAIRVTPCAIRVTPCGIRVTPCGIRVTPCAIRVTPCAIRVTPCAIR 354

Query: 830 VGDNRIYYSLAAI 842
           V    I  +  AI
Sbjct: 355 VTPYAIRVTPCAI 367


>gi|152984881|ref|YP_001347368.1| hypothetical protein PSPA7_1987 [Pseudomonas aeruginosa PA7]
 gi|150960039|gb|ABR82064.1| hypothetical protein PSPA7_1987 [Pseudomonas aeruginosa PA7]
          Length = 107

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 7/56 (12%)

Query: 829 KVGDNRIYYSLAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883
              +  +   L   KGVG   A+ I+E   A  PF SL+        K +   +LE
Sbjct: 49  TADEATLVRGL---KGVGEVKAKAIVEYRTAHGPFVSLDQLLE---VKGVGPALLE 98


>gi|329313811|gb|AEB88224.1| DNA-dependent DNA polymerase beta chain [Staphylococcus aureus
           subsp. aureus T0131]
          Length = 570

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTYS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|325203416|gb|ADY98869.1| competence protein comEA [Neisseria meningitidis M01-240355]
          Length = 99

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 31  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 83


>gi|325198757|gb|ADY94213.1| hypothetical protein NMBG2136_1528 [Neisseria meningitidis G2136]
          Length = 154

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 86  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 138


>gi|325138986|gb|EGC61534.1| competence protein comEA [Neisseria meningitidis ES14902]
 gi|325142815|gb|EGC65185.1| competence protein comEA [Neisseria meningitidis 961-5945]
 gi|325143057|gb|EGC65407.1| competence protein comEA [Neisseria meningitidis 961-5945]
          Length = 99

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 31  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 83


>gi|325135463|gb|EGC58082.1| competence protein comEA [Neisseria meningitidis M0579]
 gi|325201345|gb|ADY96799.1| competence protein comEA [Neisseria meningitidis M01-240149]
 gi|325203186|gb|ADY98639.1| competence protein comEA [Neisseria meningitidis M01-240355]
 gi|325204967|gb|ADZ00421.1| competence protein comEA [Neisseria meningitidis M01-240355]
 gi|325207325|gb|ADZ02777.1| competence protein comEA [Neisseria meningitidis NZ-05/33]
          Length = 99

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 31  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 83


>gi|325134734|gb|EGC57372.1| ComE1 [Neisseria meningitidis M13399]
          Length = 99

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 31  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 83


>gi|325133016|gb|EGC55690.1| competence protein comEA [Neisseria meningitidis M6190]
 gi|325138680|gb|EGC61233.1| competence protein comEA [Neisseria meningitidis ES14902]
          Length = 99

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 31  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 83


>gi|325131426|gb|EGC54135.1| competence protein comEA [Neisseria meningitidis M6190]
 gi|325133484|gb|EGC56148.1| competence protein comEA [Neisseria meningitidis M13399]
 gi|325137459|gb|EGC60046.1| competence protein comEA [Neisseria meningitidis ES14902]
 gi|325141459|gb|EGC63935.1| competence protein comEA [Neisseria meningitidis 961-5945]
 gi|325143725|gb|EGC66044.1| competence protein comEA [Neisseria meningitidis M01-240013]
 gi|325199005|gb|ADY94461.1| competence protein comEA [Neisseria meningitidis G2136]
 gi|325199108|gb|ADY94564.1| competence protein comEA [Neisseria meningitidis G2136]
 gi|325201065|gb|ADY96520.1| competence protein comEA [Neisseria meningitidis H44/76]
 gi|325206922|gb|ADZ02375.1| competence protein comEA [Neisseria meningitidis M04-240196]
          Length = 99

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 31  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 83


>gi|325130922|gb|EGC53650.1| ComE1 [Neisseria meningitidis OX99.30304]
 gi|325131102|gb|EGC53823.1| ComE1 [Neisseria meningitidis OX99.30304]
 gi|325137125|gb|EGC59720.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Neisseria meningitidis M0579]
          Length = 99

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 31  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 83


>gi|325129404|gb|EGC52237.1| competence protein comEA [Neisseria meningitidis OX99.30304]
          Length = 99

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 31  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 83


>gi|325129162|gb|EGC52009.1| comE1 [Neisseria meningitidis N1568]
          Length = 76

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 8   LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 60


>gi|325127392|gb|EGC50326.1| comE1 [Neisseria meningitidis N1568]
          Length = 100

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 32  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 84


>gi|319411218|emb|CBY91625.1| DNA-binding competence protein ComE2 [Neisseria meningitidis WUE
           2594]
 gi|319411446|emb|CBY91861.1| DNA-binding competence protein ComE2 [Neisseria meningitidis WUE
           2594]
 gi|325133132|gb|EGC55803.1| competence protein comEA [Neisseria meningitidis M6190]
 gi|325135182|gb|EGC57807.1| competence protein comEA [Neisseria meningitidis M13399]
 gi|325138749|gb|EGC61301.1| competence protein comEA [Neisseria meningitidis ES14902]
 gi|325145194|gb|EGC67475.1| competence protein comEA [Neisseria meningitidis M01-240013]
 gi|325205162|gb|ADZ00615.1| competence protein comEA [Neisseria meningitidis M04-240196]
          Length = 99

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 31  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 83


>gi|319409673|emb|CBY89974.1| DNA-binding competence protein ComE2 [Neisseria meningitidis WUE
           2594]
 gi|319410911|emb|CBY91306.1| DNA-binding competence protein ComE2 [Neisseria meningitidis WUE
           2594]
          Length = 148

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 80  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 132


>gi|261391831|emb|CAX49288.1| DNA-binding competence protein ComE2 [Neisseria meningitidis 8013]
 gi|261392119|emb|CAX49616.1| DNA-binding competence protein ComE3 [Neisseria meningitidis 8013]
          Length = 154

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 86  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 138


>gi|261391604|emb|CAX49042.1| DNA-binding competence protein ComE1 [Neisseria meningitidis 8013]
          Length = 154

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 86  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 138


>gi|254672840|emb|CBA07032.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha275]
          Length = 148

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 80  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 132


>gi|254672424|emb|CBA05774.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha275]
          Length = 148

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 80  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 132


>gi|254672109|emb|CBA04820.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha275]
 gi|254673651|emb|CBA09218.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha275]
          Length = 96

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 28  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 80


>gi|254805414|ref|YP_003083635.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha14]
 gi|254805662|ref|YP_003083883.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha14]
 gi|254805867|ref|YP_003084088.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha14]
 gi|254668956|emb|CBA07235.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha14]
 gi|254669204|emb|CBA07991.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha14]
 gi|254669409|emb|CBA08604.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha14]
          Length = 148

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 80  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 132


>gi|254804171|ref|YP_003082392.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha14]
 gi|254667713|emb|CBA03589.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha14]
          Length = 148

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 80  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 132


>gi|161869185|ref|YP_001598351.1| DNA transport competence protein [Neisseria meningitidis 053442]
 gi|161594738|gb|ABX72398.1| DNA transport competence protein [Neisseria meningitidis 053442]
          Length = 128

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 60  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 112


>gi|161869075|ref|YP_001598241.1| DNA transport competence protein [Neisseria meningitidis 053442]
 gi|161594628|gb|ABX72288.1| DNA transport competence protein [Neisseria meningitidis 053442]
          Length = 145

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 77  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 129


>gi|159154700|gb|ABW93685.1| ComEA [Neisseria meningitidis]
 gi|254669594|emb|CBA03607.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha153]
          Length = 148

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 80  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 132


>gi|121635674|ref|YP_975919.1| putative DNA transport competence protein [Neisseria meningitidis
           FAM18]
 gi|120867380|emb|CAM11152.1| putative DNA transport competence protein [Neisseria meningitidis
           FAM18]
          Length = 154

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 86  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 138


>gi|121635298|ref|YP_975543.1| putative DNA transport competence protein [Neisseria meningitidis
           FAM18]
 gi|121635568|ref|YP_975813.1| putative DNA transport competence protein [Neisseria meningitidis
           FAM18]
 gi|120867004|emb|CAM10767.1| putative DNA transport competence protein [Neisseria meningitidis
           FAM18]
 gi|120867274|emb|CAM11045.1| putative DNA transport competence protein [Neisseria meningitidis
           FAM18]
          Length = 154

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 86  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 138


>gi|5051421|emb|CAB44964.1| ComEA protein [Neisseria meningitidis]
          Length = 170

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 102 LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 154


>gi|5051417|emb|CAB44958.1| ComEA protein [Neisseria meningitidis]
          Length = 170

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 102 LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 154


>gi|15606601|ref|NP_213981.1| DNA polymerase beta family protein [Aquifex aeolicus VF5]
 gi|2983818|gb|AAC07374.1| DNA polymerase beta family [Aquifex aeolicus VF5]
          Length = 581

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +G  +L  +++         I I D 
Sbjct: 346 LHMHTNWS--DGVNTLEEMVETAYKLGYQYIVIGDH 379


>gi|15677842|ref|NP_275009.1| ComEA-related protein [Neisseria meningitidis MC58]
 gi|7227278|gb|AAF42340.1| ComEA-related protein [Neisseria meningitidis MC58]
 gi|316985667|gb|EFV64614.1| comE1 [Neisseria meningitidis H44/76]
          Length = 148

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 80  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 132


>gi|218767241|ref|YP_002341753.1| putative DNA transport competence protein [Neisseria meningitidis
           Z2491]
 gi|218767410|ref|YP_002341922.1| putative DNA transport competence protein [Neisseria meningitidis
           Z2491]
 gi|121051249|emb|CAM07524.1| putative DNA transport competence protein [Neisseria meningitidis
           Z2491]
 gi|121051418|emb|CAM07711.1| putative DNA transport competence protein [Neisseria meningitidis
           Z2491]
          Length = 154

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 86  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 138


>gi|218768680|ref|YP_002343192.1| putative DNA transport competence protein [Neisseria meningitidis
           Z2491]
 gi|218768920|ref|YP_002343432.1| putative DNA transport competence protein [Neisseria meningitidis
           Z2491]
 gi|121052688|emb|CAM09030.1| putative DNA transport competence protein [Neisseria meningitidis
           Z2491]
 gi|121052928|emb|CAM09282.1| putative DNA transport competence protein [Neisseria meningitidis
           Z2491]
          Length = 154

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L      GA
Sbjct: 86  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKLKDQASVGA 138


>gi|289580814|ref|YP_003479280.1| DNA-directed DNA polymerase [Natrialba magadii ATCC 43099]
 gi|289530367|gb|ADD04718.1| DNA-directed DNA polymerase [Natrialba magadii ATCC 43099]
          Length = 586

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H+ +S  +G  S+  ++            I D 
Sbjct: 356 LHSHTEWS--DGNTSIEAMVAAAEDRGYDYFGIADH 389


>gi|114320153|ref|YP_741836.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226547|gb|ABI56346.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 90

 Score = 39.8 bits (91), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883
           GVG + A+ I+E   A+ PF S++D         +    LE
Sbjct: 44  GVGESRAQAIVEHREANGPFGSVDDLTQ---VSGIGETTLE 81


>gi|328954246|ref|YP_004371580.1| PHP domain protein [Desulfobacca acetoxidans DSM 11109]
 gi|328454570|gb|AEB10399.1| PHP domain protein [Desulfobacca acetoxidans DSM 11109]
          Length = 577

 Score = 39.8 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 60/171 (35%), Gaps = 31/171 (18%)

Query: 838  SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
             L AI GVG + A+ I E       +  E+F  ++         L++L+   A++  G  
Sbjct: 54   GLKAIPGVGESIAQKIEEYLNTGKIEYYEEFRRKLPI------DLDALI---AVEGMGPK 104

Query: 898  RMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKFSVENSSVRFENEQR 957
            + ++L     I    +  E  R++K   +      T ++ I   +F  +++      E  
Sbjct: 105  KAKMLFEKLGITNLTELEEAARSHKIAPLKGFGDKTEANIIEGIEFVKKSTGRFLLGE-- 162

Query: 958  VLGFYFSGHPLDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKK 1008
            VL       PL            +      A        +A    S ++ K
Sbjct: 163  VL-------PLAD----------RVLATLRALPEVQRADVAG---SLRRMK 193


>gi|227547370|ref|ZP_03977419.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|312132627|ref|YP_003999966.1| comea [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482797|ref|ZP_07941807.1| competence protein ComEA helix-hairpin-helix repeat region
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689325|ref|YP_004209059.1| hypothetical protein BLIF_1139 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691337|ref|YP_004220907.1| hypothetical protein BLLJ_1148 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|227212185|gb|EEI80081.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|311773576|gb|ADQ03064.1| ComEA [Bifidobacterium longum subsp. longum BBMN68]
 gi|316915759|gb|EFV37171.1| competence protein ComEA helix-hairpin-helix repeat region
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456193|dbj|BAJ66815.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460661|dbj|BAJ71281.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 165

 Score = 39.8 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883
           L +IKG+G  TA+ I++   A   + S++      D K +  + LE
Sbjct: 114 LQSIKGIGPVTAQRIIDHRTAIGGYTSVDQLL---DVKGIGSKTLE 156


>gi|239621301|ref|ZP_04664332.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515762|gb|EEQ55629.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|291516779|emb|CBK70395.1| competence protein ComEA helix-hairpin-helix repeat region
           [Bifidobacterium longum subsp. longum F8]
          Length = 259

 Score = 39.8 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883
           L +IKG+G  TA+ I++   A   + S++      D K +  + LE
Sbjct: 208 LQSIKGIGPVTAQRIIDHRTAIGGYTSVDQLL---DVKGIGSKTLE 250


>gi|189439192|ref|YP_001954273.1| DNA uptake protein [Bifidobacterium longum DJO10A]
 gi|189427627|gb|ACD97775.1| DNA uptake protein [Bifidobacterium longum DJO10A]
          Length = 234

 Score = 39.8 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883
           L +IKG+G  TA+ I++   A   + S++      D K +  + LE
Sbjct: 183 LQSIKGIGPVTAQRIIDHRTAIGGYTSVDQLL---DVKGIGSKTLE 225


>gi|148273322|ref|YP_001222883.1| hypothetical protein CMM_2138 [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831252|emb|CAN02208.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 533

 Score = 39.8 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 14/71 (19%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF--------SALEFSQKACAAG 66
            VH+ +S  +G   + + + +  A+    I +TD  N          + + F ++A    
Sbjct: 56  HVHTLFS-NDGKYRVRDHIRQAVANGVQWIVLTDHGNTAHSTKGSVDAIVPFIEEARKE- 113

Query: 67  IQPIIGCQLDI 77
                G  + I
Sbjct: 114 ----FGSDIVI 120


>gi|23466007|ref|NP_696610.1| hypothetical protein BL1451 [Bifidobacterium longum NCC2705]
 gi|23326725|gb|AAN25246.1| hypothetical protein with C-terminal helix hairpin helix domain
           like that in ComE [Bifidobacterium longum NCC2705]
          Length = 259

 Score = 39.8 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883
           L +IKG+G  TA+ I++   A   + S++      D K +  + LE
Sbjct: 208 LQSIKGIGPVTAQRIIDHRTAIGGYTSVDQLL---DVKGIGSKTLE 250


>gi|46191301|ref|ZP_00120477.2| COG1555: DNA uptake protein and related DNA-binding proteins
           [Bifidobacterium longum DJO10A]
          Length = 229

 Score = 39.8 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883
           L +IKG+G  TA+ I++   A   + S++      D K +  + LE
Sbjct: 178 LQSIKGIGPVTAQRIIDHRTAIGGYTSVDQLL---DVKGIGSKTLE 220


>gi|258423814|ref|ZP_05686700.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A9635]
 gi|257846046|gb|EEV70074.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A9635]
          Length = 570

 Score = 39.8 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTYS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|70731655|ref|YP_261396.1| competence protein comEA [Pseudomonas fluorescens Pf-5]
 gi|68345954|gb|AAY93560.1| competence protein comEA [Pseudomonas fluorescens Pf-5]
          Length = 109

 Score = 39.8 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 844 GVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLES 884
           GVG   A+ I+     + PF S+++       K + R +LE 
Sbjct: 63  GVGAAKAKAIVAYREENGPFASVDELLE---VKGIGRAILER 101


>gi|323442364|gb|EGA99993.1| hypothetical protein SAO46_1700 [Staphylococcus aureus O46]
          Length = 570

 Score = 39.8 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTYS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|323440693|gb|EGA98403.1| hypothetical protein SAO11_0545 [Staphylococcus aureus O11]
          Length = 570

 Score = 39.8 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTYS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|300691880|ref|YP_003752875.1| hypothetical protein RPSI07_2236 [Ralstonia solanacearum PSI07]
 gi|299078940|emb|CBJ51600.1| conserved protein of unknown function, PHP domain-like [Ralstonia
          solanacearum PSI07]
          Length = 286

 Score = 39.8 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS  ++ +G L+   +  + AA      A+TD +
Sbjct: 14 LHCHS--TVSDGLLAPREVAARAAAHGVTLWALTDHD 48


>gi|298694431|gb|ADI97653.1| DNA-dependent DNA polymerase beta chain [Staphylococcus aureus
           subsp. aureus ED133]
          Length = 570

 Score = 39.8 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTYS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|283783402|ref|YP_003374156.1| comEA protein [Gardnerella vaginalis 409-05]
 gi|283441182|gb|ADB13648.1| comEA protein [Gardnerella vaginalis 409-05]
          Length = 262

 Score = 39.8 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDF--CSRVDSKKLNR 879
           L  +KG+G  TA  I+        F SLED      +  K LN+
Sbjct: 211 LQTLKGIGPKTAARIIAQRKRVGYFRSLEDLMQIKGIGPKTLNK 254


>gi|223043722|ref|ZP_03613765.1| PHP domain protein [Staphylococcus capitis SK14]
 gi|222442819|gb|EEE48921.1| PHP domain protein [Staphylococcus capitis SK14]
          Length = 570

 Score = 39.8 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+  +++   A     + ITD 
Sbjct: 337 HMHTTYS--DGAFSIREMVEANIAKGYQFMVITDH 369


>gi|148267635|ref|YP_001246578.1| hypothetical protein SaurJH9_1202 [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393690|ref|YP_001316365.1| hypothetical protein SaurJH1_1224 [Staphylococcus aureus subsp.
           aureus JH1]
 gi|147740704|gb|ABQ49002.1| PHP C-terminal domain protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946142|gb|ABR52078.1| PHP domain protein [Staphylococcus aureus subsp. aureus JH1]
          Length = 570

 Score = 39.8 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTYS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|73992040|ref|XP_866253.1| PREDICTED: similar to Adenosine deaminase (Adenosine
          aminohydrolase) isoform 2 [Canis familiaris]
          Length = 392

 Score = 39.8 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 9/30 (30%)

Query: 5  LEKSPSF----VHLQVHSSYSLLEGALSLN 30
          + ++P+F    V L VH     L+GA+   
Sbjct: 1  MTQTPAFDKPKVELHVH-----LDGAIKPE 25


>gi|82750750|ref|YP_416491.1| hypothetical protein SAB1007 [Staphylococcus aureus RF122]
 gi|82656281|emb|CAI80695.1| DNA-dependent DNA polymerase beta chain [Staphylococcus aureus
           RF122]
          Length = 570

 Score = 39.8 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTYS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|15924133|ref|NP_371667.1| hypothetical protein SAV1143 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926727|ref|NP_374260.1| hypothetical protein SA0990 [Staphylococcus aureus subsp. aureus
           N315]
 gi|156979465|ref|YP_001441724.1| hypothetical protein SAHV_1134 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253317074|ref|ZP_04840287.1| hypothetical protein SauraC_13244 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255005929|ref|ZP_05144530.2| hypothetical protein SauraM_05650 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257795127|ref|ZP_05644106.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A9781]
 gi|258407165|ref|ZP_05680314.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A9763]
 gi|258421744|ref|ZP_05684665.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A9719]
 gi|258432912|ref|ZP_05688601.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A9299]
 gi|258443402|ref|ZP_05691745.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A8115]
 gi|258446075|ref|ZP_05694237.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A6300]
 gi|258449812|ref|ZP_05697910.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A6224]
 gi|258454911|ref|ZP_05702874.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A5937]
 gi|269202755|ref|YP_003282024.1| hypothetical protein SAAV_1110 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282894170|ref|ZP_06302401.1| hypothetical protein SGAG_01521 [Staphylococcus aureus A8117]
 gi|282928665|ref|ZP_06336262.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|295405947|ref|ZP_06815756.1| hypothetical protein SMAG_01105 [Staphylococcus aureus A8819]
 gi|296275630|ref|ZP_06858137.1| hypothetical protein SauraMR_04760 [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297246507|ref|ZP_06930345.1| hypothetical protein SLAG_02580 [Staphylococcus aureus A8796]
 gi|13700943|dbj|BAB42239.1| DNA-dependent DNA polymerase beta chain [Staphylococcus aureus
           subsp. aureus N315]
 gi|14246913|dbj|BAB57305.1| DNA-dependent DNA polymerase beta chain [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|156721600|dbj|BAF78017.1| DNA-dependent DNA polymerase beta chain [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|257789099|gb|EEV27439.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A9781]
 gi|257841320|gb|EEV65765.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A9763]
 gi|257842077|gb|EEV66505.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A9719]
 gi|257849352|gb|EEV73329.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A9299]
 gi|257851492|gb|EEV75431.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A8115]
 gi|257855133|gb|EEV78074.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A6300]
 gi|257856732|gb|EEV79635.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A6224]
 gi|257862791|gb|EEV85556.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A5937]
 gi|262075045|gb|ACY11018.1| hypothetical protein SAAV_1110 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282589704|gb|EFB94790.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|282763656|gb|EFC03785.1| hypothetical protein SGAG_01521 [Staphylococcus aureus A8117]
 gi|285816823|gb|ADC37310.1| DNA polymerase X family [Staphylococcus aureus 04-02981]
 gi|294969382|gb|EFG45402.1| hypothetical protein SMAG_01105 [Staphylococcus aureus A8819]
 gi|297176613|gb|EFH35876.1| hypothetical protein SLAG_02580 [Staphylococcus aureus A8796]
 gi|312829536|emb|CBX34378.1| PHP domain protein [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128540|gb|EFT84545.1| hypothetical protein CGSSa03_01265 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329725170|gb|EGG61659.1| PHP domain protein [Staphylococcus aureus subsp. aureus 21172]
          Length = 570

 Score = 39.8 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTYS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|21282755|ref|NP_645843.1| hypothetical protein MW1026 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485981|ref|YP_043202.1| hypothetical protein SAS1077 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57651752|ref|YP_186016.1| hypothetical protein SACOL1153 [Staphylococcus aureus subsp. aureus
           COL]
 gi|87162139|ref|YP_493740.1| hypothetical protein SAUSA300_1042 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194844|ref|YP_499642.1| hypothetical protein SAOUHSC_01098 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221267|ref|YP_001332089.1| hypothetical protein NWMN_1055 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161509317|ref|YP_001574976.1| hypothetical protein USA300HOU_1078 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221140459|ref|ZP_03564952.1| hypothetical protein SauraJ_02341 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|258451840|ref|ZP_05699861.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A5948]
 gi|262048724|ref|ZP_06021606.1| hypothetical protein SAD30_1554 [Staphylococcus aureus D30]
 gi|282919920|ref|ZP_06327649.1| rpoD hypothetical protein [Staphylococcus aureus A9765]
 gi|284024068|ref|ZP_06378466.1| hypothetical protein Saura13_05734 [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848133|ref|ZP_06788880.1| hypothetical protein SKAG_00192 [Staphylococcus aureus A9754]
 gi|297208219|ref|ZP_06924649.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300912296|ref|ZP_07129739.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|304381300|ref|ZP_07363953.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|21204193|dbj|BAB94891.1| DNA-dependent DNA polymerase beta chain [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49244424|emb|CAG42852.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57285938|gb|AAW38032.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus COL]
 gi|87128113|gb|ABD22627.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202402|gb|ABD30212.1| DNA-dependent DNA polymerase beta chain, putative [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|150374067|dbj|BAF67327.1| DNA-dependent DNA polymerase beta chain [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|160368126|gb|ABX29097.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|257860448|gb|EEV83275.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           A5948]
 gi|259163180|gb|EEW47740.1| hypothetical protein SAD30_1554 [Staphylococcus aureus D30]
 gi|269940637|emb|CBI49016.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282594636|gb|EFB99620.1| rpoD hypothetical protein [Staphylococcus aureus A9765]
 gi|294824933|gb|EFG41355.1| hypothetical protein SKAG_00192 [Staphylococcus aureus A9754]
 gi|296886958|gb|EFH25861.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300886542|gb|EFK81744.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|302750966|gb|ADL65143.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340283|gb|EFM06224.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|315196866|gb|EFU27209.1| hypothetical protein CGSSa01_03830 [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320143099|gb|EFW34889.1| PHP domain protein [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329728864|gb|EGG65285.1| PHP domain protein [Staphylococcus aureus subsp. aureus 21193]
 gi|329730727|gb|EGG67106.1| PHP domain protein [Staphylococcus aureus subsp. aureus 21189]
          Length = 570

 Score = 39.8 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTYS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|328875325|gb|EGG23690.1| hypothetical protein DFA_05824 [Dictyostelium fasciculatum]
          Length = 664

 Score = 39.8 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA---GIQPII 71
             HS+YS  +G LS+ N++     +   A+ +TD N +   L   + A       I  I 
Sbjct: 278 HSHSTYS--DGKLSVENLILWHIKNGFNAMIVTDHNTVSGGLAAEKLAKEKYQEKIVVIP 335

Query: 72  GCQ 74
           G +
Sbjct: 336 GIE 338


>gi|320141042|gb|EFW32889.1| PHP domain protein [Staphylococcus aureus subsp. aureus MRSA131]
          Length = 570

 Score = 39.8 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTYS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|149201117|ref|ZP_01878092.1| hypothetical protein RTM1035_15867 [Roseovarius sp. TM1035]
 gi|149145450|gb|EDM33476.1| hypothetical protein RTM1035_15867 [Roseovarius sp. TM1035]
          Length = 307

 Score = 39.8 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS+ S  +G L    +  + AA+    +A+TD 
Sbjct: 16 LHTHSTRS--DGVLPPEEVCRRYAAEGYDFMALTDH 49


>gi|153835308|ref|ZP_01987975.1| PHP domain containing protein [Vibrio harveyi HY01]
 gi|148868173|gb|EDL67326.1| PHP domain containing protein [Vibrio harveyi HY01]
          Length = 292

 Score = 39.8 bits (91), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G  + ++++D+  +     +AITD + +       Q        I+ I 
Sbjct: 5  LHSHTTAS--DGRFAPHDLVDRALSFDIEVLAITDHDTVDGLAPAKQYVEENNLPIKIIN 62

Query: 72 GCQLD 76
          G ++ 
Sbjct: 63 GIEIS 67


>gi|256393553|ref|YP_003115117.1| PHP domain-containing protein [Catenulispora acidiphila DSM 44928]
 gi|256359779|gb|ACU73276.1| PHP domain protein [Catenulispora acidiphila DSM 44928]
          Length = 579

 Score = 39.8 bits (91), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 19/96 (19%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN-NLFSALE-------FSQKACA- 64
           L  H+   L +G   L  +L   A       A+TD   NL  A++        +Q+A A 
Sbjct: 342 LHTHTD--LTDGLAPLEVMLQTAADLGYAYYAVTDHAPNL--AMQRMTDDKMLAQRARAR 397

Query: 65  ------AGIQPIIGCQLDIDMQDNLKMTNQGKTPFP 94
                 +G++ + G +L+ID   ++         F 
Sbjct: 398 DLDREYSGMRVLHGTELNIDAAGDVDWPADFLAGFD 433


>gi|16331618|ref|NP_442346.1| ComE ORF1 [Synechocystis sp. PCC 6803]
 gi|1001681|dbj|BAA10416.1| ComE ORF1 [Synechocystis sp. PCC 6803]
          Length = 553

 Score = 39.8 bits (91), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L ++ G+G +TA  I+     K F SLED   RV     ++  +E L
Sbjct: 504 LESLPGIGPSTAEKIISTREQKAFTSLEDL-GRVKGIGPSK--IEGL 547


>gi|325267207|ref|ZP_08133873.1| DNA transport competence protein [Kingella denitrificans ATCC
           33394]
 gi|324981340|gb|EGC16986.1| DNA transport competence protein [Kingella denitrificans ATCC
           33394]
          Length = 103

 Score = 39.8 bits (91), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 844 GVGTTTARHIME-ASADKPFDSLEDFCS 870
           G+G   AR I+E    + PF S++D   
Sbjct: 38  GIGPAKARAIVEYREKNGPFKSVDDLAK 65


>gi|310767750|gb|ADP12700.1| Protein TrpH [Erwinia sp. Ejp617]
          Length = 293

 Score = 39.8 bits (91), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 10/121 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
           L  H+  S  +G L+   ++ +    +   +AITD +         +        ++ + 
Sbjct: 16  LHSHTRAS--DGLLTPEQLVLRAVQQRVGVLAITDHDTTDGIAPAREAVTRHQLPLRLVD 73

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRI 131
           G ++    +++                + LL   A+  +RL        L+ +  +   I
Sbjct: 74  GVEISTLWENHEIHIVGLGIDIAHPQMVALLA--AQAERRLAR----ARLIAERLEKAHI 127

Query: 132 C 132
            
Sbjct: 128 P 128


>gi|218440024|ref|YP_002378353.1| helix-hairpin-helix motif protein [Cyanothece sp. PCC 7424]
 gi|218172752|gb|ACK71485.1| helix-hairpin-helix motif protein [Cyanothece sp. PCC 7424]
          Length = 543

 Score = 39.8 bits (91), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNR 879
           L  + G+G + A+ I++   +KPF S++D   RV     N+
Sbjct: 488 LETLPGIGPSLAQKIIKTREEKPFTSVQDL-ERVAGIGENK 527


>gi|272876745|gb|ACZ96370.1| neuropeptide-like precursor 1 [Rhodnius prolixus]
          Length = 454

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 15/104 (14%)

Query: 844 GVGTTTARHIMEASADKPF----------DSLEDFCSRVDSKKL-NRRVLESLVFAGALD 892
            +       ++   A  P+           SL++   R++     ++R L +L  +G L 
Sbjct: 44  NLEKRHVSSLLGNRASGPYQTGKRSSPSKSSLDELAERLEEAAQEDKRYLGALARSGDLR 103

Query: 893 CFGYSRMQLLQSLDNIQKYAQWVEKNR----TNKHENIFAHEKG 932
                R +  + LD++       E+ R        +++F  E  
Sbjct: 104 VVARDRQEKREDLDSLIDELASTEEMRRMQFDALRDDLFEEEPD 147


>gi|158520971|ref|YP_001528841.1| TPR repeat-containing protein [Desulfococcus oleovorans Hxd3]
 gi|158509797|gb|ABW66764.1| Tetratricopeptide TPR_2 repeat protein [Desulfococcus oleovorans
           Hxd3]
          Length = 350

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 62/222 (27%), Gaps = 18/222 (8%)

Query: 102 LVSTAEGYQRLIELVSRM-YLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGP----ID 156
               A G+  L  L+++  Y+         +      E   +  + L           + 
Sbjct: 63  YPKNAMGFVNLCRLITKAGYIQGDEYDPGALEK---AEKALDQAVALDPELFDAYYHGVF 119

Query: 157 RAFFFNSSQVAEKRLLTFKKLFGDR-----LYVNLQRHRGYDRYRESQV-VQLAYTHELP 210
                N+ + A +  L  ++L         L+  L            +    +A +++  
Sbjct: 120 HYIRRNNLEKARQFTLKAQELRPGSAKTDLLFCELALEEDNPEEVIRRANSAIANSNDTS 179

Query: 211 LVATNNSLFLSEEDYEAHDVL--MAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLP 268
           ++  +++ F   + Y+       +   +   +          D Y       +  +    
Sbjct: 180 VL--HDAYFALSKTYKKRKEYEKVVNIYRKTIEIFPDDPWNMDAYAAFLLYHMEDYDKAI 237

Query: 269 EALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKEEENE 310
           E     +EI         +      +   +  +D Q E   E
Sbjct: 238 EYARRALEIMDFGMARKHLGQAYYKKAATQLWEDKQYEAAAE 279


>gi|225873244|ref|YP_002754703.1| PHP domain protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793638|gb|ACO33728.1| PHP domain protein [Acidobacterium capsulatum ATCC 51196]
          Length = 580

 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN-NLF 53
            +H+     +G  ++  + +         IAITD + NL 
Sbjct: 348 HMHTD--ATDGRNTIREMAEAALERGYQYIAITDHSKNLA 385


>gi|260575517|ref|ZP_05843515.1| PHP domain protein [Rhodobacter sp. SW2]
 gi|259022160|gb|EEW25458.1| PHP  domain protein [Rhodobacter sp. SW2]
          Length = 308

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  HS+ S  +G L    +  +  A+    +A+TD 
Sbjct: 19 LHTHSTRS--DGVLPPEEVCRRYRAEGYDFLALTDH 52


>gi|297566359|ref|YP_003685331.1| PHP domain-containing protein [Meiothermus silvanus DSM 9946]
 gi|296850808|gb|ADH63823.1| PHP domain protein [Meiothermus silvanus DSM 9946]
          Length = 576

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           LQVHS++S  +G  +L  +     A     +A+TD 
Sbjct: 341 LQVHSTWS--DGKNTLLELAQAAKALGYAYLAVTDH 374


>gi|317489456|ref|ZP_07947966.1| PHP domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|316911385|gb|EFV32984.1| PHP domain-containing protein [Eggerthella sp. 1_3_56FAA]
          Length = 262

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 17/118 (14%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA----AGIQP 69
           L VHS+ S  +G+ +   +L++ A      +A T+ +           A       G+Q 
Sbjct: 5   LHVHSTMS--DGSDTFEQVLEQAAQRGVERLAFTNHDTTAGL----TAARELGERLGVQV 58

Query: 70  IIGCQLD-IDMQDNLKMTNQGKTPFPTVPSIVLLV------STAEGYQRLIELVSRMY 120
           + G ++   D +   K+   G       P++  L         A    +L  LV   Y
Sbjct: 59  VGGIEVSAYDFERGRKVHILGLGVEEGAPALAALCGPTLQQRNANSLWQLDRLVEAGY 116


>gi|309378930|emb|CBX22517.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 99

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L
Sbjct: 31  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDLAK---VKGIGPAVLAKL 75


>gi|170291206|ref|YP_001738022.1| hypothetical protein Kcr_1594 [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170175286|gb|ACB08339.1| Protein of unknown function DUF655 [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 191

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
           L  + G+G  T   I+E  A KPF S  +   R   K
Sbjct: 117 LELLPGIGKKTLLKILEERARKPFSSFSELAERAGIK 153


>gi|156975030|ref|YP_001445937.1| hypothetical protein VIBHAR_02756 [Vibrio harveyi ATCC BAA-1116]
 gi|156526624|gb|ABU71710.1| hypothetical protein VIBHAR_02756 [Vibrio harveyi ATCC BAA-1116]
          Length = 292

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G  + ++++D+  +     +AITD + +       Q        I+ I 
Sbjct: 5  LHSHTTAS--DGRFAPHDLVDRALSFDIEVLAITDHDTVDGLAPAKQYVEENNLPIKIIN 62

Query: 72 GCQLD 76
          G ++ 
Sbjct: 63 GIEIS 67


>gi|146296864|ref|YP_001180635.1| phosphotransferase domain-containing protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410440|gb|ABP67444.1| PHP C-terminal domain protein [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 231

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 14  LQVHSSYSLL---EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
           L +HS+ S     +  ++ NNI++         I+ITD N+  +  EFS+ A   GI  I
Sbjct: 7   LHIHSALSPCADND--MTPNNIINMAKIKGLNVISITDHNSTLNLKEFSEVAKHLGILFI 64

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
            G +++   + ++ +  +  +       I+
Sbjct: 65  PGVEIETCEEVHVLLYFKDFSVVEEFQEII 94


>gi|260789651|ref|XP_002589859.1| hypothetical protein BRAFLDRAFT_239175 [Branchiostoma floridae]
 gi|229275043|gb|EEN45870.1| hypothetical protein BRAFLDRAFT_239175 [Branchiostoma floridae]
          Length = 477

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 37/390 (9%), Positives = 87/390 (22%), Gaps = 19/390 (4%)

Query: 420 IDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLI 479
                 +R+     +++            +G+L+       + R   +   + +      
Sbjct: 77  SYSTARKRELARHKLKHSGNIPYKCDQCDYGTLRKSDLDAHMVRHTGIMPFKCNECDYG- 135

Query: 480 PNDPAHPVSLQAIADDSRFREARLADPSVDRLLEI--SQKLEGLYRHASTHAAGIVIGDR 537
                   + + I      R      P    + +   + K + L RH   HA G V    
Sbjct: 136 --------TGRRIDFKRHLRTHTGEKPFKCGMCDFRAAMKKQDLDRHKLRHATGKVSFKC 187

Query: 538 PLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVD 597
                V + +       V              + ++  +K   + +  +     +     
Sbjct: 188 AECNYVALKKSDLDKHMVM---HTGDLPYKCDQCNYSSMKKSEITRHKVAVHTGKKPYSC 244

Query: 598 LSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDN 657
           L       ++  +    K  L    +  SG +            D   L+   R      
Sbjct: 245 LQCDFRTAYKINYSTHRKDCLVRHMIIHSGAKPYNCKQCEYRAADKSNLIKHIRKHLNVK 304

Query: 658 IVVYNNRKNGKEKIV--SIHPLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRR 715
                        I    +   +      +     Y  +              E   L  
Sbjct: 305 RQYRCKNCAYTTTIRAEFLIHKMSHAKTYSCPECSYTSKRSSCVTRHRKTHTGEKPYLCD 364

Query: 716 AMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQ 775
             G +  +  +  K +          +        +   K    G  K H  ++ +    
Sbjct: 365 KCGFRSSDNSNLLKHKQYYH---QTCTSKSQYICEDCGYKTNASGHMKYHKYSHTIDCPY 421

Query: 776 TAWMKTHYPVEFLAASMTLEMDNVEKIKKF 805
                 +        +         K  + 
Sbjct: 422 VCGECGYRTPHRWNFAKHKFQHTGVKPYRC 451


>gi|78184692|ref|YP_377127.1| phosphoesterase PHP-like [Synechococcus sp. CC9902]
 gi|78168986|gb|ABB26083.1| Phosphoesterase PHP-like [Synechococcus sp. CC9902]
          Length = 215

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
            H+  S  +G+L    ++ +        +A+TD ++
Sbjct: 24 HCHTVCS--DGSLEPVGLVQQATNLGLTHLAVTDHHS 58


>gi|330834389|ref|YP_004409117.1| phosphotransferase domain-containing protein [Metallosphaera
           cuprina Ar-4]
 gi|329566528|gb|AEB94633.1| phosphotransferase domain-containing protein [Metallosphaera
           cuprina Ar-4]
          Length = 220

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 20/91 (21%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI-----QP 69
            VHS +S  +G      ++++ +      IA+TD +             + G+     + 
Sbjct: 6   HVHSVFS--DGKHDPEVLVNQASKMNI-FIALTDHDT------------SRGVSRVEGKV 50

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
           I G ++       + + +    P   + S+V
Sbjct: 51  IPGQEVTTQYGHVVILCSFPPDPPSDLTSLV 81


>gi|73992038|ref|XP_534428.2| PREDICTED: similar to Adenosine deaminase (Adenosine
          aminohydrolase) isoform 1 [Canis familiaris]
          Length = 362

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 9/30 (30%)

Query: 5  LEKSPSF----VHLQVHSSYSLLEGALSLN 30
          + ++P+F    V L VH     L+GA+   
Sbjct: 1  MTQTPAFDKPKVELHVH-----LDGAIKPE 25


>gi|30248672|ref|NP_840742.1| metF; 5,10-methylenetetrahydrofolate reductase oxidoreductase
           protein [Nitrosomonas europaea ATCC 19718]
 gi|30180267|emb|CAD84572.1| metF; 5,10-methylenetetrahydrofolate reductase oxidoreductase
           protein [Nitrosomonas europaea ATCC 19718]
          Length = 281

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 133 LSWLQEIGTEGL---IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRH 189
            S L++  + G+   + L G     + +A      + A + +   +K FGD  ++ +  +
Sbjct: 85  RSILEKYHSHGISRIVALRGDLPSGMAQA---GEFRYANELVAFIRKEFGDTFWIEVAAY 141

Query: 190 RGYDRYRESQVVQL 203
             Y     S +   
Sbjct: 142 PEYHPQARSALEDF 155


>gi|302555975|ref|ZP_07308317.1| PHP domain-containing protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302473593|gb|EFL36686.1| PHP domain-containing protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 347

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +HS +S  +G   +  +    A       A+TD 
Sbjct: 106 HLHSDWS--DGGSPIEEMGRAAAELGHEWAALTDH 138


>gi|240949361|ref|ZP_04753703.1| tryptophan synthase subunit alpha [Actinobacillus minor NM305]
 gi|240296211|gb|EER46864.1| tryptophan synthase subunit alpha [Actinobacillus minor NM305]
          Length = 268

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 36/106 (33%), Gaps = 21/106 (19%)

Query: 33  LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92
             + A +   A+ I D   L  A EF+  A   GIQP+            +   N  +  
Sbjct: 115 FKRCAENGVDAVLIADLPVLA-AEEFTGTAKKYGIQPVF-----------ICPPNADQAT 162

Query: 93  FPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVRICLSWLQE 138
              V  +       EGY     LVSR  +     Q+    L  L E
Sbjct: 163 IEKVAELT------EGY---TYLVSRAGVTSAENQAHSSNLDHLVE 199


>gi|297583685|ref|YP_003699465.1| PHP domain-containing protein [Bacillus selenitireducens MLS10]
 gi|297142142|gb|ADH98899.1| PHP domain protein [Bacillus selenitireducens MLS10]
          Length = 575

 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L +H+++S  +GA S++ +++         +AITD 
Sbjct: 342 LHMHTTWS--DGAQSIDEMIEACRMKGHAFMAITDH 375


>gi|330956817|gb|EGH57077.1| hypothetical protein PSYCIT7_36822 [Pseudomonas syringae Cit 7]
          Length = 35

 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 16/33 (48%)

Query: 158 AFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHR 190
           A +   +   ++    + ++F DR Y+ +QR  
Sbjct: 3   AAWPKDTAELDELWREWLEVFPDRFYIEVQRTN 35


>gi|227504489|ref|ZP_03934538.1| possible competence protein EA [Corynebacterium striatum ATCC 6940]
 gi|227198906|gb|EEI78954.1| possible competence protein EA [Corynebacterium striatum ATCC 6940]
          Length = 208

 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KGVG  TA  I+    +   F S+E     +D   +     E L
Sbjct: 158 LMDLKGVGEVTAEAIIAHREEIGGFSSVEQL---MDISGIGPAKFEGL 202


>gi|154149310|ref|YP_001406050.1| ComE operon protein 1 [Campylobacter hominis ATCC BAA-381]
 gi|153805319|gb|ABS52326.1| ComE operon protein 1 [Campylobacter hominis ATCC BAA-381]
          Length = 83

 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLED 867
           L  +KG+G TTA  I+E   +  F  +ED
Sbjct: 29  LMTLKGIGETTAEAIIEYRKENKFTKIED 57


>gi|283782025|ref|YP_003372780.1| DNA uptake protein-like protein DNA-binding protein [Pirellula
           staleyi DSM 6068]
 gi|283440478|gb|ADB18920.1| DNA uptake protein-like protein DNA-binding protein [Pirellula
           staleyi DSM 6068]
          Length = 172

 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 827 DFKVG-DNRIYYSLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
           DFK+  +   +  L  + GVG + A+ I+E      PF S ED       +KL  + L +
Sbjct: 87  DFKLDINGADWPELCLLPGVGESLAQSIVEDRQRRGPFASHEDLLR---VRKLGPKTLAA 143


>gi|269218613|ref|ZP_06162467.1| competence protein [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211724|gb|EEZ78064.1| competence protein [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 380

 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVL 882
           L  + GVG  TA+ I+     +  F S++D     D   + +  L
Sbjct: 330 LQTLPGVGPATAKAIIAWREENGRFRSVDDLL---DVSGIGKATL 371


>gi|217966976|ref|YP_002352482.1| PHP domain protein [Dictyoglomus turgidum DSM 6724]
 gi|217336075|gb|ACK41868.1| PHP domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 244

 Score = 39.4 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGI 67
           +H+ YS  +G +S + I++         + I D ++   A +    A +  I
Sbjct: 6  HIHTKYSF-DGMMSPSKIVEYAKRRVINILLICDHDSFEGARQALDYAYSKKI 57


>gi|323141461|ref|ZP_08076350.1| PHP domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322414041|gb|EFY04871.1| PHP domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 278

 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
          L +H++ S  +G  +   ++ +    Q   IA+TD +++ 
Sbjct: 7  LHIHTTAS--DGTWTPAELIAEAQKQQLGLIAVTDHDSVA 44


>gi|167045666|gb|ABZ10314.1| putative tRNA synthetases class II (D, K and N) [uncultured marine
            crenarchaeote HF4000_APKG10L15]
          Length = 431

 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 5/53 (9%), Positives = 17/53 (32%), Gaps = 5/53 (9%)

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                 E+    ++G  + L   V   ++       ++ ++T  +     +   
Sbjct: 8    RTHYIEDINTDMKGQEVILGGWVEDLRKMG-----KMTFLTLRDVTGITQIIL 55


>gi|288561413|ref|YP_003424899.1| PHP domain-containing protein [Methanobrevibacter ruminantium M1]
 gi|288544123|gb|ADC48007.1| PHP domain-containing protein [Methanobrevibacter ruminantium M1]
          Length = 221

 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           +HS +S  +      +IL +       AIAI+D N
Sbjct: 6  HIHSVFS-GDSRSEPIDILIQAQKIGLDAIAISDHN 40


>gi|220911843|ref|YP_002487152.1| PHP domain protein [Arthrobacter chlorophenolicus A6]
 gi|219858721|gb|ACL39063.1| PHP domain protein [Arthrobacter chlorophenolicus A6]
          Length = 528

 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/89 (14%), Positives = 34/89 (38%), Gaps = 7/89 (7%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQ 74
            VH+ +S  +G   + + + +        + +TD  N+        +     I P+I  +
Sbjct: 52  HVHTLFS-NDGKYRVQDHVRQAIRYGVDWLVLTDHGNVA-----HSQLSTEQIVPLI-EE 104

Query: 75  LDIDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           +  +  D++ + +  +   P      + V
Sbjct: 105 VRKEFGDSILIYHGLEWNIPGAEHATVFV 133


>gi|291544579|emb|CBL17688.1| Predicted metal-dependent phosphoesterases (PHP family)
          [Ruminococcus sp. 18P13]
          Length = 238

 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 17/71 (23%)

Query: 14 LQVHSSYS------LLEGALSLNNILDKIAADQQPAIAITDTN---NLFSALEFSQKACA 64
          L +HS  S      +L      +NI+          IA+TD N   N      F + A A
Sbjct: 8  LHLHSCLSPCGDDDML-----PSNIVGMAVVKGLDVIALTDHNTSRN---CPAFLELAEA 59

Query: 65 AGIQPIIGCQL 75
           GI  I G +L
Sbjct: 60 YGILAIPGMEL 70


>gi|222055957|ref|YP_002538319.1| DNA uptake protein and related DNA-binding protein-like protein
           [Geobacter sp. FRC-32]
 gi|221565246|gb|ACM21218.1| DNA uptake protein and related DNA-binding protein-like protein
           [Geobacter sp. FRC-32]
          Length = 170

 Score = 39.4 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFC 869
           L  + G+    AR I+    ++PF S+ED  
Sbjct: 115 LLGLPGMSAGEARSIINFRKNRPFTSVEDLL 145


>gi|257465638|ref|ZP_05630009.1| tryptophan synthase subunit alpha [Actinobacillus minor 202]
 gi|257451298|gb|EEV25341.1| tryptophan synthase subunit alpha [Actinobacillus minor 202]
          Length = 268

 Score = 39.4 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 21/87 (24%)

Query: 33  LDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKTP 92
             + A +   A+ I D   L  A EF+  A   GIQP+            +   N  +  
Sbjct: 115 FKRCAENGVDAVLIADLPVLA-AEEFTGTAKKYGIQPVF-----------ICPPNADQAT 162

Query: 93  FPTVPSIVLLVSTAEGYQRLIELVSRM 119
              V  +       EGY     LVSR 
Sbjct: 163 IEKVAELT------EGY---TYLVSRA 180


>gi|327480028|gb|AEA83338.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 105

 Score = 39.4 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 842 IKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
           +KG+G T A+ I++   +  PF S+++       K +    LE L
Sbjct: 57  LKGIGATKAKAIIDYREEHGPFSSVDELLE---VKGIGSATLEKL 98


>gi|312885881|ref|ZP_07745513.1| PHP domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311301688|gb|EFQ78725.1| PHP domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 890

 Score = 39.4 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 14/103 (13%)

Query: 14  LQVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTN---NLFSALE-FSQKACA 64
           L +HS     S+ + +  ++  NI+D   +     I+ITD N   N    ++     A  
Sbjct: 19  LHIHSFGEEGSFDVTDNTMTPQNIVDTAISKNLSIISITDHNEIGN----VKVALAHAEG 74

Query: 65  AGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAE 107
             I  I G ++       L       +       +  +    E
Sbjct: 75  KNILVIPGIEVSTTQGHLLVYFEDYLSLKNFYGRLS-IAPNRE 116


>gi|297259745|ref|XP_001109908.2| PREDICTED: adenosine deaminase [Macaca mulatta]
          Length = 363

 Score = 39.4 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 9/30 (30%)

Query: 5  LEKSPSF----VHLQVHSSYSLLEGALSLN 30
          + ++P+F    V L VH     L+GA+   
Sbjct: 1  MTQTPAFDKPKVELHVH-----LDGAIKPE 25


>gi|253733621|ref|ZP_04867786.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|253728420|gb|EES97149.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus aureus
           subsp. aureus TCH130]
          Length = 477

 Score = 39.4 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 244 HMHTTYS--DGAFSIRDMVEANIAKGYKFMVITDH 276


>gi|171778643|ref|ZP_02919739.1| hypothetical protein STRINF_00591 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282600|gb|EDT48024.1| hypothetical protein STRINF_00591 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 226

 Score = 39.4 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  I G+G   A+ I++   A+  F S++D     +   +  + LE L
Sbjct: 175 LQTISGIGAKRAQDIIDYRDANGGFSSVDDLK---NISGIGEKTLEKL 219


>gi|313890729|ref|ZP_07824354.1| comEA protein [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120830|gb|EFR43944.1| comEA protein [Streptococcus pseudoporcinus SPIN 20026]
          Length = 194

 Score = 39.4 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  I G+G   A+ I++       F  LED         + ++ LE L
Sbjct: 143 LTKIPGIGAKRAKEIIDVRESQGGFKKLEDLLK---ISGIGQKTLEKL 187


>gi|167044870|gb|ABZ09537.1| putative protein of unknown function, DUF655 [uncultured marine
           crenarchaeote HF4000_APKG8D22]
          Length = 173

 Score = 39.4 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 838 SLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSK 875
           +L  I G+G T    I++    +PF+S  D   R   K
Sbjct: 125 ALELIPGIGKTYMTVIIKEREKEPFESFHDIEKRTGLK 162


>gi|167624667|ref|YP_001674961.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Shewanella halifaxensis HAW-EB4]
 gi|167354689|gb|ABZ77302.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Shewanella halifaxensis HAW-EB4]
          Length = 104

 Score = 39.4 bits (90), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 16/64 (25%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           L+A+ G+G   A  I+E       FDS++      + K +  +++E             +
Sbjct: 54  LSALSGIGEAKAAAIVEYRQVHGKFDSVDQL---TEVKGIGEKLIE------------KN 98

Query: 898 RMQL 901
           R QL
Sbjct: 99  RSQL 102


>gi|196231131|ref|ZP_03129991.1| PHP domain protein [Chthoniobacter flavus Ellin428]
 gi|196224961|gb|EDY19471.1| PHP domain protein [Chthoniobacter flavus Ellin428]
          Length = 584

 Score = 39.4 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             H++ S  +G  +L  +++         + I D 
Sbjct: 348 HNHTTAS--DGRNTLAEMVEAAQELGLQYLGIADH 380


>gi|169334724|ref|ZP_02861917.1| hypothetical protein ANASTE_01130 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169257462|gb|EDS71428.1| hypothetical protein ANASTE_01130 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 281

 Score = 39.4 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 2/38 (5%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          V L  H+  +L +G   +  I+            ITD 
Sbjct: 4  VSLHNHT--TLSDGKTDMEEIVLAAIERGFTHFGITDH 39


>gi|57241980|ref|ZP_00369920.1| competence protein ComEA [Campylobacter upsaliensis RM3195]
 gi|57017172|gb|EAL53953.1| competence protein ComEA [Campylobacter upsaliensis RM3195]
          Length = 79

 Score = 39.4 bits (90), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLE 883
           L ++KG+G T A+ I++   ++ F S+E+       K +  +  E
Sbjct: 29  LKSLKGIGETKAKAILDYRKEQNFTSIEELKK---VKGIGDKTFE 70


>gi|331091037|ref|ZP_08339879.1| hypothetical protein HMPREF9477_00522 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330405259|gb|EGG84795.1| hypothetical protein HMPREF9477_00522 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 266

 Score = 39.4 bits (90), Expect = 3.6,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +H+ +S  +   S   ++          + ITD 
Sbjct: 6  HMHTEFS-TDAHCSPEEMVLGAIKKGLTTVCITDH 39


>gi|160900843|ref|YP_001566425.1| phosphotransferase domain-containing protein [Delftia acidovorans
          SPH-1]
 gi|160366427|gb|ABX38040.1| PHP domain protein [Delftia acidovorans SPH-1]
          Length = 287

 Score = 39.4 bits (90), Expect = 3.6,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 4/38 (10%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAI-AITDTN 50
          L  HS  S  +G L+   + ++ A+     + A+TD +
Sbjct: 10 LHSHSVVS--DGTLTPEQLAERAASRGVQ-LSALTDHD 44


>gi|327468971|gb|EGF14443.1| competence protein ComEA [Streptococcus sanguinis SK330]
          Length = 243

 Score = 39.4 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  I G+G   A  I+     +  F S++D         +  + LE L
Sbjct: 192 LQTISGIGQKRASDIIAYRESNGRFKSVDDLKK---VSGIGDKTLEKL 236


>gi|327458707|gb|EGF05055.1| competence protein CelA [Streptococcus sanguinis SK1057]
          Length = 239

 Score = 39.4 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  I G+G   A  I+     +  F S++D         +  + LE L
Sbjct: 188 LQTISGIGQKRASDIIAYRESNGRFKSVDDLKK---VSGIGDKTLEKL 232


>gi|325694058|gb|EGD35976.1| competence protein CelA [Streptococcus sanguinis SK150]
          Length = 244

 Score = 39.4 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  I G+G   A  I+     +  F S++D         +  + LE L
Sbjct: 193 LQTISGIGQKRASDIIAYRESNGRFKSVDDLKK---VSGIGDKTLEKL 237


>gi|325690140|gb|EGD32144.1| competence protein CelA [Streptococcus sanguinis SK115]
          Length = 239

 Score = 39.4 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  I G+G   A  I+     +  F S++D         +  + LE L
Sbjct: 188 LQTISGIGQKRASDIIAYRESNGRFKSVDDLKK---VSGIGDKTLEKL 232


>gi|325688277|gb|EGD30296.1| competence protein CelA [Streptococcus sanguinis SK72]
 gi|328945523|gb|EGG39674.1| competence protein comEA [Streptococcus sanguinis SK1087]
          Length = 239

 Score = 39.4 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  I G+G   A  I+     +  F S++D         +  + LE L
Sbjct: 188 LQTISGIGQKRASDIIAYRESNGRFKSVDDLKK---VSGIGDKTLEKL 232


>gi|324990610|gb|EGC22546.1| competence protein CelA [Streptococcus sanguinis SK353]
          Length = 239

 Score = 39.4 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  I G+G   A  I+     +  F S++D         +  + LE L
Sbjct: 188 LQTISGIGQKRASDIIAYRESNGRFKSVDDLKK---VSGIGDKTLEKL 232


>gi|323352682|ref|ZP_08087652.1| competence protein CelA [Streptococcus sanguinis VMC66]
 gi|322121718|gb|EFX93464.1| competence protein CelA [Streptococcus sanguinis VMC66]
          Length = 243

 Score = 39.4 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  I G+G   A  I+     +  F S++D         +  + LE L
Sbjct: 192 LQTISGIGQKRASDIIAYRESNGRFKSVDDLKK---VSGIGDKTLEKL 236


>gi|312129879|ref|YP_003997219.1| php domain protein [Leadbetterella byssophila DSM 17132]
 gi|311906425|gb|ADQ16866.1| PHP domain protein [Leadbetterella byssophila DSM 17132]
          Length = 555

 Score = 39.4 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS+YS  +G  S+  +             I D 
Sbjct: 324 LHNHSTYS--DGEASVEAMAQACRDLGFVYFGIADH 357


>gi|255994074|ref|ZP_05427209.1| histidinol phosphatase [Eubacterium saphenum ATCC 49989]
 gi|255993742|gb|EEU03831.1| histidinol phosphatase [Eubacterium saphenum ATCC 49989]
          Length = 246

 Score = 39.4 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 11/54 (20%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQ 68
            H+ +S   G  S+ + +         A+AI+D +             A G++
Sbjct: 13 HTHTVFS--HGKGSIEDNVLSARKLGLKAVAISDHSV--GH-------RAHGVK 55


>gi|125717568|ref|YP_001034701.1| DNA uptake protein, putative [Streptococcus sanguinis SK36]
 gi|125497485|gb|ABN44151.1| DNA uptake protein, putative [Streptococcus sanguinis SK36]
          Length = 226

 Score = 39.4 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  I G+G   A  I+     +  F S++D         +  + LE L
Sbjct: 175 LQTISGIGQKRASDIIAYRESNGRFKSVDDLKK---VSGIGDKTLEKL 219


>gi|313897265|ref|ZP_07830809.1| PHP domain protein [Clostridium sp. HGF2]
 gi|312957986|gb|EFR39610.1| PHP domain protein [Clostridium sp. HGF2]
          Length = 295

 Score = 39.4 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS---ALEFSQKACAAGIQPI 70
          L +HS YS  +G      +L    A     +AI D N++     AL   Q     GI  I
Sbjct: 6  LHMHSKYSD-DGQYEPIELLKMCKAAGLDMMAIADHNSVRGSRIALRHQQ---EYGITCI 61

Query: 71 IGCQLD 76
             ++D
Sbjct: 62 PAIEID 67


>gi|255320864|ref|ZP_05362038.1| competence protein, ComEA helix-hairpin-helix repeat domain
           [Acinetobacter radioresistens SK82]
 gi|262380243|ref|ZP_06073398.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255302033|gb|EET81276.1| competence protein, ComEA helix-hairpin-helix repeat domain
           [Acinetobacter radioresistens SK82]
 gi|262298437|gb|EEY86351.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 138

 Score = 39.4 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 844 GVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883
           GVG   A+ I+E    +  F+S+ED       K +  ++ E
Sbjct: 93  GVGEKKAQAIVEYRNKNGKFNSIEDLQK---VKGIGPKLFE 130


>gi|51891593|ref|YP_074284.1| putative DNA-binding protein [Symbiobacterium thermophilum IAM
           14863]
 gi|51855282|dbj|BAD39440.1| putative DNA-binding protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 230

 Score = 39.4 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883
           L  + G+G   AR I+       PF S++D    ++   +  + LE
Sbjct: 180 LETVPGIGPALARAIITYRTEHGPFQSVDDL---INVSGIGSKTLE 222


>gi|315635083|ref|ZP_07890363.1| competence protein ComEA [Aggregatibacter segnis ATCC 33393]
 gi|315476204|gb|EFU66956.1| competence protein ComEA [Aggregatibacter segnis ATCC 33393]
          Length = 231

 Score = 39.4 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 838 SLAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLE 883
           +L ++ G+G   A+ I+E    +  F +L D         +    LE
Sbjct: 179 ALESLSGIGEAKAKAIIEYREKNGKFKNLSDLSK---VPGIGDATLE 222


>gi|304315446|ref|YP_003850593.1| RNA-binding protein [Methanothermobacter marburgensis str. Marburg]
 gi|302588905|gb|ADL59280.1| predicted RNA-binding protein [Methanothermobacter marburgensis
           str. Marburg]
          Length = 193

 Score = 39.4 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
           L  + G+G      I++A  +KPF+S ED  +RV 
Sbjct: 118 LELLPGIGKKHMWDILKAREEKPFESFEDIKNRVP 152


>gi|298252531|ref|ZP_06976325.1| DNA uptake protein [Gardnerella vaginalis 5-1]
 gi|297532895|gb|EFH71779.1| DNA uptake protein [Gardnerella vaginalis 5-1]
          Length = 273

 Score = 39.4 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDF--CSRVDSKKLNR 879
           L  +KG+G  TA  I+        F SLED      + SK LN+
Sbjct: 222 LETLKGIGPKTAARIIAQRKRVGYFRSLEDLMQIKGIGSKTLNK 265


>gi|217077373|ref|YP_002335091.1| metal dependent phosphohydrolase [Thermosipho africanus TCF52B]
 gi|217037228|gb|ACJ75750.1| metal dependent phosphohydrolase [Thermosipho africanus TCF52B]
          Length = 337

 Score = 39.4 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 968  LDVYKPILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEY 1027
            + + K ++ K       E    I  + +     V SK+  +T+ G +   +TF +     
Sbjct: 1    MKLPKELIEKFREPYISELENYIN-SEVETIVKVKSKRLLETKNGQKYLLLTFEDKTGIL 59

Query: 1028 EAN 1030
             A 
Sbjct: 60   RAI 62


>gi|331698772|ref|YP_004335011.1| PHP domain-containing protein [Pseudonocardia dioxanivorans CB1190]
 gi|326953461|gb|AEA27158.1| PHP domain protein [Pseudonocardia dioxanivorans CB1190]
          Length = 340

 Score = 39.4 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 12/34 (35%)

Query: 16  VHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            HS     +G   L  +++         + ITD 
Sbjct: 107 CHSHTDASDGGSPLAEMVETAIDLGHDYLVITDH 140


>gi|269959635|ref|ZP_06174015.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835558|gb|EEZ89637.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 292

 Score = 39.4 bits (90), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAG--IQPII 71
          L  H++ S  +G  + ++++D+  +     +AITD + +       Q        I+ I 
Sbjct: 5  LHSHTTAS--DGRFAPHDLVDRALSFDIEVLAITDHDTVDGLAPAKQYVEENNLPIKIIN 62

Query: 72 GCQLD 76
          G ++ 
Sbjct: 63 GIEIS 67


>gi|331697356|ref|YP_004333595.1| aspartyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
 gi|326952045|gb|AEA25742.1| aspartyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190]
          Length = 594

 Score = 39.4 bits (90), Expect = 3.8,   Method: Composition-based stats.
 Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 5/54 (9%)

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            M         A   G  + LA  V  ++         + ++   + +   +  F
Sbjct: 1    MRTHPAGTLRADHAGQTVTLAGWVARRRDHG-----GVIFIDLRDSSGSAQVVF 49


>gi|257790010|ref|YP_003180616.1| PHP domain-containing protein [Eggerthella lenta DSM 2243]
 gi|257473907|gb|ACV54227.1| PHP domain protein [Eggerthella lenta DSM 2243]
          Length = 262

 Score = 39.4 bits (90), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 11/95 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA----AGIQP 69
           L VHS+ S  +G+ +   +L++ A      +A T+ +           A       G+Q 
Sbjct: 5   LHVHSTMS--DGSDTFEQVLEQAAQRGVERLAFTNHDTTAGL----TAARELGERLGVQV 58

Query: 70  IIGCQLD-IDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           + G ++   D +   K+   G       P++  L 
Sbjct: 59  VGGIEVSAYDFERGRKVHILGLGVEEGAPALAALC 93


>gi|297529317|ref|YP_003670592.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Geobacillus sp. C56-T3]
 gi|297252569|gb|ADI26015.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Geobacillus sp. C56-T3]
          Length = 207

 Score = 39.0 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  + G+G   A+ I+    +  PF  +ED     +   +  + LE L
Sbjct: 156 LMQLPGIGPAKAKAIIAYREEHGPFRRVEDLL---NVTGIGEKTLEKL 200


>gi|291296714|ref|YP_003508112.1| PHP domain-containing protein [Meiothermus ruber DSM 1279]
 gi|290471673|gb|ADD29092.1| PHP domain protein [Meiothermus ruber DSM 1279]
          Length = 536

 Score = 39.0 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 9/51 (17%)

Query: 3   QYLEKSPSFVHL----QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           Q + + P    L     VHS+YS  +G+ +L  + +   A     + I D 
Sbjct: 294 QAMLQPP---QLRGLIHVHSTYS--DGSATLRQMAEAALAQGLEYMVICDH 339


>gi|291524720|emb|CBK90307.1| competence protein ComEA helix-hairpin-helix repeat region
           [Eubacterium rectale DSM 17629]
          Length = 235

 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 52/160 (32%), Gaps = 15/160 (9%)

Query: 727 KQKERFISGASKNGISKTIAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVE 786
           +Q+++    A     S    V I   +A    Y   K  A    ++      + T     
Sbjct: 61  EQEQKAKDTADDTDESTEWCVYICGQVANPGVYRV-KPGARVCELVDMAGGMLDTADKSF 119

Query: 787 FL--AASMTLEMDNVEKIKKFCQDARQFNIQIMPPS----VNTPCVDFKVGDNRIYYS-- 838
           +   +     +M     +++   D                         V D +I  +  
Sbjct: 120 WNLASELYDGQMLYFPTVEELKSDHIPEGTYTTGIDGSLMKGGAEEHIGVKDGKININTA 179

Query: 839 ----LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873
               L A+ G+G + A+ I+E    +  F S+ED  +RV 
Sbjct: 180 TVEQLMALSGIGESKAKSIVEDRAKNGLFSSIED-ITRVS 218


>gi|299822578|ref|ZP_07054464.1| cell division topological specificity factor MinE [Listeria grayi
           DSM 20601]
 gi|299816107|gb|EFI83345.1| cell division topological specificity factor MinE [Listeria grayi
           DSM 20601]
          Length = 570

 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 9/57 (15%)

Query: 3   QYLEKSPSFVH-------LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           + +++  +F+        L +H+++S  +GA SL  +++   A +   + ITD    
Sbjct: 321 ERIKRQSTFIEEKDIRGDLHMHTTWS--DGAYSLPEMIEACIAKKYEYMVITDHGGF 375


>gi|229824873|ref|ZP_04450942.1| hypothetical protein GCWU000182_00222 [Abiotrophia defectiva ATCC
          49176]
 gi|229790876|gb|EEP26990.1| hypothetical protein GCWU000182_00222 [Abiotrophia defectiva ATCC
          49176]
          Length = 311

 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 12/68 (17%)

Query: 13 HLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA------AG 66
           L  H++ S  + +L+   +++ +  D+    AITD N +                    
Sbjct: 7  ELHNHTTES--DSSLTCKELIELMENDKVDVFAITDHNTISG----HSIIKELLNKGDYK 60

Query: 67 IQPIIGCQ 74
          I+ I G +
Sbjct: 61 IKCIYGME 68


>gi|189526598|ref|XP_001923170.1| PREDICTED: zinc finger protein 451 [Danio rerio]
 gi|220677998|emb|CAX14125.1| novel protein similar to vertebrate zinc finger protein 451
           (ZNF451) [Danio rerio]
          Length = 916

 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 62/592 (10%), Positives = 131/592 (22%), Gaps = 67/592 (11%)

Query: 113 IELVSRMYLLDQGKQSVRICLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLL 172
            +L S  +   Q  Q                +I+     S      F FNS     K + 
Sbjct: 207 SKLSSDGHRRSQMYQ----------------MIVGFACPS----CYFLFNSKDECCKHMN 246

Query: 173 TFKKLFGDRLYVNLQRHRGYDRYRESQVVQLAYTHE------LPLVATNNSLFLSEEDYE 226
                                R    QV+ L           +P  A    + L ++   
Sbjct: 247 A--------------------RKHNRQVISLTEEKASAVPVPVPRFAKQRLIALCKDIGF 286

Query: 227 AHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQ 286
           +    +         +               +      +D+ + +             L 
Sbjct: 287 SVRCTVCSQRLNSHMEATAHFNVHCRDGCAIATADQTVADMMKKMAVVGHCISCPEVFLS 346

Query: 287 VHAPILPRFIEKECDDIQKEEENEL----------RNKAVAGLEVRLAQGAIAKGYHAQD 336
           +      +   K   +     E  L           N+  A  E   A+   A+   +Q 
Sbjct: 347 LDQMQEHKERMKHDVENITLLERALLHYSNHCETRTNQKRASNEDHSAKRKRAEDSDSQV 406

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
            R+R    +               A   Q A           G   G  +   L ++   
Sbjct: 407 KRERKHSNVAWFCECGLRFVEENHAKRHQQAANQIFHKCAVCGKLTGESSIARLHMSRFH 466

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQ-DRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
                  F  +    ++ MP  +          +   Y + +     V   I+     +K
Sbjct: 467 GGAHLSNFLFYCRKCKVEMPRMEDIMAHVSASHQGHNYYEEREDSGSVIDQISAKPSTSK 526

Query: 456 AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
                   + +   S + R+C+ + +                F+             + +
Sbjct: 527 ECEPIRSVSPKKTESWLCRMCEDLFDSEKLVRKHCGDLSSHSFQRFACGHCPQKFFKDST 586

Query: 516 QKLEGLYRHASTHAAGIVIGDRP--LSQLVPMYRDVRSDLPVTQFN--MKWIEKAGLIKF 571
            +      H    A     G     L      ++    +L    +         +     
Sbjct: 587 LRRHCANEHNGDVALRYFCGLCDSMLFDTENEFQVHYDNLHSQDYYRLETSTNHSQNAPE 646

Query: 572 DFLGLKTLTLLQKSLDF----LAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSG 627
             +     +  Q  L        +    V  + +     E       +      Q  +  
Sbjct: 647 VIVNNSNTSDSQTCLCMGSKKSREERKPVYTNCMKQLAAENKCRYRCRNCAKSAQSYAEM 706

Query: 628 MRQALEGMQPD--CIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPL 677
               L   + +    + +  + S            ++      E      P 
Sbjct: 707 KTHILLKHKGNGKSFDVVCMICSQSHKDVPSFHAHHHIHHCQAEPCTYSRPD 758


>gi|325830364|ref|ZP_08163821.1| PHP domain protein [Eggerthella sp. HGA1]
 gi|325487831|gb|EGC90269.1| PHP domain protein [Eggerthella sp. HGA1]
          Length = 262

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 11/95 (11%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA----AGIQP 69
           L VHS+ S  +G+ +   +L++ A      +A T+ +           A       G+Q 
Sbjct: 5   LHVHSTMS--DGSDTFEQVLEQAAQRGVERLAFTNHDTTAGL----TAARELGERLGVQV 58

Query: 70  IIGCQLD-IDMQDNLKMTNQGKTPFPTVPSIVLLV 103
           + G ++   D +   K+   G       P++  L 
Sbjct: 59  VGGIEVSAYDFERGRKVHILGLGVEEGAPALAALC 93


>gi|322385784|ref|ZP_08059428.1| competence protein CelA [Streptococcus cristatus ATCC 51100]
 gi|321270522|gb|EFX53438.1| competence protein CelA [Streptococcus cristatus ATCC 51100]
          Length = 231

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  + G+G   A+ I+    A+  F S+++     +   +  + LE L
Sbjct: 179 LQTVSGIGQKKAQDIIAYREANGKFKSVDELK---NVSGIGAKTLEKL 223


>gi|148878089|gb|AAI46170.1| Adenosine deaminase [Bos taurus]
 gi|296480987|gb|DAA23102.1| adenosine deaminase [Bos taurus]
          Length = 363

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 9/30 (30%)

Query: 5  LEKSPSF----VHLQVHSSYSLLEGALSLN 30
          + ++P+F    V L VH     L+GA+   
Sbjct: 1  MAQTPAFNKPKVELHVH-----LDGAIKPE 25


>gi|50540360|ref|NP_001002646.1| adenosine deaminase [Danio rerio]
 gi|49904346|gb|AAH76532.1| Adenosine deaminase [Danio rerio]
          Length = 362

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 9/45 (20%)

Query: 2  TQYLEKSPSF----VHLQVHSSYSLLEGALSLNNILDKIAADQQP 42
             +   P+F    V L VH     L+GA+ L  +LD        
Sbjct: 1  MAEMNGKPAFDKPKVELHVH-----LDGAIRLKTVLDVAKRRGIS 40


>gi|154498760|ref|ZP_02037138.1| hypothetical protein BACCAP_02751 [Bacteroides capillosus ATCC
          29799]
 gi|150272150|gb|EDM99354.1| hypothetical protein BACCAP_02751 [Bacteroides capillosus ATCC
          29799]
          Length = 217

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 36 IAADQQPAIAITDTNNL--FSALEFSQKACAAGIQPIIGCQLDIDMQ 80
           A     A A+TD N +   +A  F + A   GI  + G +L    +
Sbjct: 2  CALAGIEAAALTDHNTVGNCAA--FCEAAERYGILALPGMELTTAEE 46


>gi|78211662|ref|YP_380441.1| lysyl-tRNA synthetase [Synechococcus sp. CC9605]
 gi|123770824|sp|Q3ANE6|SYK_SYNSC RecName: Full=Lysyl-tRNA synthetase; AltName: Full=Lysine--tRNA
            ligase; Short=LysRS
 gi|78196121|gb|ABB33886.1| lysyl-tRNA synthetase [Synechococcus sp. CC9605]
          Length = 502

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 4/59 (6%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 973  PILRKMGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
              + ++ +   +      R  ++ +A  V++++        ++ + T ++     +   
Sbjct: 31   HRMAELQVTHADLPKGEERDVSVSVAGRVMTRRVMG-----KLAFFTLADETGSIQLFL 84


>gi|189909154|ref|YP_001961123.1| Env [Macaque simian foamy virus]
 gi|110282962|sp|P23073|ENV_SFV1 RecName: Full=Envelope glycoprotein gp130; AltName: Full=Env
           polyprotein; Contains: RecName: Full=Leader peptide;
           Short=LP; AltName: Full=Env leader protein; Short=Elp;
           AltName: Full=gp18LP; Contains: RecName: Full=Surface
           protein; Short=SU; AltName: Full=Glycoprotein 80;
           Short=gp80; Contains: RecName: Full=Transmembrane
           protein; Short=TM; AltName: Full=Glycoprotein 48;
           Short=gp48
          Length = 989

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 35/326 (10%), Positives = 79/326 (24%), Gaps = 21/326 (6%)

Query: 436 NKYGHERVAQIITFGSLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADD 495
                E +A      + + K  L D+        +      ++   DP      Q     
Sbjct: 171 MMINSENIANTANL-TQETKVLLADMINEEMNDLANQMIDFEIPLGDPRDQKQYQHQKCF 229

Query: 496 SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPV 555
             F    L      +    S  +         H              VP  +        
Sbjct: 230 QEFAHCYLVKYKTTKGWPSSTVIADQCPLPGNHPTVQYAHQNIWDYYVPFEQIRPEGWNS 289

Query: 556 TQFNMKWIEKAGLIKFDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTK 615
             +  +     G     +L   + T +    D +  +   +DL+    ++     L+   
Sbjct: 290 KSY-YEDARIGGFYIPKWLRNNSYTHVLFCSDQIYGKWYNIDLTAQERENLLVRKLINLA 348

Query: 616 GTLGIFQLESSGMRQALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIH 675
                   + +   +  +  + D    I  L    R                 E +  ++
Sbjct: 349 KGNSSQLKDRAMPAEWDKQGKADLFRQINTLDVCNR----------------PEMVFLLN 392

Query: 676 PLIDPMLKETQGVIIYQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISG 735
                           ++ V Q   L   +     +   + +          ++E+  + 
Sbjct: 393 SSYYEFSLWEGDCGFTRQNVTQANSLCKDF---YNNSKWQKLHPYSCRFWRYKQEKEETK 449

Query: 736 ASKNGISKTIAVNIFELLAKFADYGF 761
            S     K +    ++      D+GF
Sbjct: 450 CSNGEKKKCLYYPQWDTPEALYDFGF 475


>gi|114332039|ref|YP_748261.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Nitrosomonas eutropha C91]
 gi|114309053|gb|ABI60296.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Nitrosomonas eutropha C91]
          Length = 94

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L ++KG+G   A+ I+E       F S+ D     + K +    L  L
Sbjct: 32  LESVKGLGPAKAKAIIEYREKHGMFKSVGDL---TNVKGIGVGTLRQL 76


>gi|315607913|ref|ZP_07882906.1| YhgF like protein [Prevotella buccae ATCC 33574]
 gi|315250382|gb|EFU30378.1| YhgF like protein [Prevotella buccae ATCC 33574]
          Length = 711

 Score = 39.0 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 7/42 (16%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNR 879
           L  + G+G   AR+I++    + PF S      R   KK+ R
Sbjct: 493 LTYVSGLGPALARNIVDYRRKNGPFTS------RAQLKKVPR 528


>gi|288924888|ref|ZP_06418824.1| S1 RNA binding domain protein [Prevotella buccae D17]
 gi|288338078|gb|EFC76428.1| S1 RNA binding domain protein [Prevotella buccae D17]
          Length = 720

 Score = 39.0 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 7/42 (16%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNR 879
           L  + G+G   AR+I++    + PF S      R   KK+ R
Sbjct: 502 LTYVSGLGPALARNIVDYRRKNGPFTS------RAQLKKVPR 537


>gi|229493739|ref|ZP_04387521.1| PHP domain protein [Rhodococcus erythropolis SK121]
 gi|229319339|gb|EEN85178.1| PHP domain protein [Rhodococcus erythropolis SK121]
          Length = 284

 Score = 39.0 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 15/91 (16%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA--AGIQPII 71
           L  HS+ S  +G  +   ++   A      +AITD +       +++ A A  AG+  + 
Sbjct: 5   LHTHSNAS--DGTDTPAALMRAAADAGLDVVAITDHDTTSG---WAEAAQALPAGVSLVR 59

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           G ++  +         +G+  +P    ++  
Sbjct: 60  GMEMSCE--------GRGERGWPVAVHLLAY 82


>gi|309775130|ref|ZP_07670142.1| putative PHP domain protein [Erysipelotrichaceae bacterium
          3_1_53]
 gi|308917085|gb|EFP62813.1| putative PHP domain protein [Erysipelotrichaceae bacterium
          3_1_53]
          Length = 296

 Score = 39.0 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 9/67 (13%)

Query: 14 LQVHSSYSLLEGALSLN----NILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
          L +HS +S+ +G          ++          +A+ D N++       ++    G+  
Sbjct: 4  LHLHSKWSI-DG----EYECTQLIQIAKKAGLRTVALCDHNSMQGIDTMREEGNRHGVHV 58

Query: 70 IIGCQLD 76
          I   + D
Sbjct: 59 IAAIEFD 65


>gi|27806933|ref|NP_776312.1| adenosine deaminase [Bos taurus]
 gi|20141178|sp|P56658|ADA_BOVIN RecName: Full=Adenosine deaminase; AltName: Full=Adenosine
          aminohydrolase
 gi|9652182|gb|AAF91430.1|AF280603_1 adenosine deaminase [Bos taurus]
          Length = 363

 Score = 39.0 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 9/30 (30%)

Query: 5  LEKSPSF----VHLQVHSSYSLLEGALSLN 30
          + ++P+F    V L VH     L+GA+   
Sbjct: 1  MAQTPAFNKPKVELHVH-----LDGAIKPE 25


>gi|228917880|ref|ZP_04081417.1| PHP domain protein [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228841816|gb|EEM86926.1| PHP domain protein [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 245

 Score = 39.0 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 12  VHLQVHSSYSLLEGALSLNN--ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQP 69
           V L  H+ +S  +    L     L  +       +AITD + +  AL+F        I+ 
Sbjct: 5   VELHTHTCHS-HDST--LGKWFYLLMLKLRGINVVAITDHDEIEGALKFKPFLEKHSIRV 61

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           IIG ++     + + +    K      P   +L
Sbjct: 62  IIGEEIFSSKGEIIGLFINEKISPGKSPRDTML 94


>gi|167043278|gb|ABZ07984.1| putative tRNA synthetases class II (D, K and N) [uncultured marine
            crenarchaeote HF4000_ANIW141M12]
          Length = 431

 Score = 39.0 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 5/53 (9%), Positives = 18/53 (33%), Gaps = 5/53 (9%)

Query: 979  GIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                 E+  A ++G  + L   +   ++       ++ ++T  +     +   
Sbjct: 8    RTHYIEDVNADMKGQEVILGGWIEDLRKMG-----KMTFLTLRDVTGITQIIL 55


>gi|226940162|ref|YP_002795235.1| competence protein ComEA helix-hairpin-helix region [Laribacter
           hongkongensis HLHK9]
 gi|226715088|gb|ACO74226.1| competence protein ComEA helix-hairpin-helix region [Laribacter
           hongkongensis HLHK9]
          Length = 99

 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  +KG+G   A+ I++    + PF +L+D       +   R+ ++ L
Sbjct: 31  LEDVKGLGPVKAKAIIDYRQKNGPFKTLDDLDK---VEGFGRKSIDKL 75


>gi|307152976|ref|YP_003888360.1| PHP domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306983204|gb|ADN15085.1| PHP domain protein [Cyanothece sp. PCC 7822]
          Length = 230

 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
           +H++ S  +G LS   +++++       +AITD ++        Q A  
Sbjct: 36 HMHTTCS--DGQLSPIALIEQVLKIGLKGLAITDHHSTQG----YQIAQE 79


>gi|330953542|gb|EGH53802.1| competence protein ComEA helix-hairpin-helix region [Pseudomonas
           syringae Cit 7]
          Length = 120

 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 844 GVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLES 884
           G+G   A  I+    A+  F S+++       K + + +LE 
Sbjct: 74  GIGKNKADAIVAYREANGEFTSIDELIE---VKGIGKAILER 112


>gi|223044372|ref|ZP_03614406.1| comEA protein [Staphylococcus capitis SK14]
 gi|222442241|gb|EEE48352.1| comEA protein [Staphylococcus capitis SK14]
          Length = 226

 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L +I GVG + AR I+     +  F ++ED       K    +  E L
Sbjct: 176 LKSIPGVGPSKAREIINYREQNGGFKNIEDLKK---IKGFGEKTFEKL 220


>gi|330428047|gb|AEC19381.1| phosphoesterase [Pusillimonas sp. T7-7]
          Length = 256

 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 20/51 (39%)

Query: 32 ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82
          + ++  A+     A+TD + L    +    A    +  I G ++ +    +
Sbjct: 1  MAERAHANGVQLWALTDHDELSGLAQARAAATDLNLPFIPGVEISVTWAQH 51


>gi|302332751|gb|ADL22944.1| bifunctional DNA polymerase / phosphoesterase [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 570

 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H+++S  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTFS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|283470353|emb|CAQ49564.1| DNA-dependent DNA polymerase beta chain [Staphylococcus aureus
           subsp. aureus ST398]
          Length = 570

 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H+++S  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTFS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|282908433|ref|ZP_06316264.1| DNA polymerase beta [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282328098|gb|EFB58380.1| DNA polymerase beta [Staphylococcus aureus subsp. aureus WW2703/97]
          Length = 488

 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H+++S  +GA S+ ++++   A     + ITD 
Sbjct: 346 HMHTTFS--DGAFSIRDMVEANIAKGYKFMVITDH 378


>gi|282918841|ref|ZP_06326576.1| hypothetical protein SASG_00147 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282316651|gb|EFB47025.1| hypothetical protein SASG_00147 [Staphylococcus aureus subsp.
           aureus C427]
          Length = 570

 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H+++S  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTFS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|288573203|ref|ZP_06391560.1| PHP domain protein [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568944|gb|EFC90501.1| PHP domain protein [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 223

 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 2/41 (4%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
           HL      S  +  L L   + +        I ITD + L
Sbjct: 5  THLHTI-EGSP-DSFLPLERAVSRAKELSMDGICITDHDTL 43


>gi|49483306|ref|YP_040530.1| hypothetical protein SAR1116 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49241435|emb|CAG40119.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus MRSA252]
          Length = 570

 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H+++S  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTFS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|282916392|ref|ZP_06324154.1| hypothetical protein SATG_01227 [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770203|ref|ZP_06343095.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           subsp. aureus H19]
 gi|282319832|gb|EFB50180.1| hypothetical protein SATG_01227 [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460350|gb|EFC07440.1| DNA-dependent DNA polymerase subunit beta [Staphylococcus aureus
           subsp. aureus H19]
          Length = 570

 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H+++S  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTFS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|257425194|ref|ZP_05601620.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257427857|ref|ZP_05604255.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257430492|ref|ZP_05606874.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433254|ref|ZP_05609612.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436093|ref|ZP_05612140.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus M876]
 gi|282903691|ref|ZP_06311579.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905460|ref|ZP_06313315.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282910718|ref|ZP_06318521.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282913918|ref|ZP_06321705.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus M899]
 gi|282923963|ref|ZP_06331639.1| hypothetical protein SARG_01504 [Staphylococcus aureus subsp.
           aureus C101]
 gi|283957886|ref|ZP_06375337.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293500953|ref|ZP_06666804.1| hypothetical protein SCAG_01483 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293509910|ref|ZP_06668619.1| hypothetical protein SAZG_01811 [Staphylococcus aureus subsp.
           aureus M809]
 gi|293526497|ref|ZP_06671182.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295427630|ref|ZP_06820262.1| hypothetical protein SIAG_00150 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297591416|ref|ZP_06950054.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus MN8]
 gi|257272170|gb|EEV04302.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257274698|gb|EEV06185.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257278620|gb|EEV09239.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281347|gb|EEV11484.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284375|gb|EEV14495.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus M876]
 gi|282313935|gb|EFB44327.1| hypothetical protein SARG_01504 [Staphylococcus aureus subsp.
           aureus C101]
 gi|282321986|gb|EFB52310.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325323|gb|EFB55632.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282330752|gb|EFB60266.1| DNA polymerase X family protein [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595309|gb|EFC00273.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790035|gb|EFC28852.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920569|gb|EFD97632.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095958|gb|EFE26219.1| hypothetical protein SCAG_01483 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467360|gb|EFF09877.1| hypothetical protein SAZG_01811 [Staphylococcus aureus subsp.
           aureus M809]
 gi|295127988|gb|EFG57622.1| hypothetical protein SIAG_00150 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576302|gb|EFH95018.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312438481|gb|ADQ77552.1| DNA-dependent DNA polymerase family X [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315193813|gb|EFU24208.1| hypothetical protein CGSSa00_10424 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 570

 Score = 39.0 bits (89), Expect = 4.3,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H+++S  +GA S+ ++++   A     + ITD 
Sbjct: 337 HMHTTFS--DGAFSIRDMVEANIAKGYKFMVITDH 369


>gi|302392561|ref|YP_003828381.1| PHP domain protein [Acetohalobium arabaticum DSM 5501]
 gi|302204638|gb|ADL13316.1| PHP domain protein [Acetohalobium arabaticum DSM 5501]
          Length = 246

 Score = 39.0 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 14  LQVHSSYSLLEG--ALSLNNILDKIAADQQPAIAITDTNNLFSA--LE-FSQKACAAGIQ 68
           L VH+  S   G   ++  NI+    A     +AITD N+   A  LE   + A ++ + 
Sbjct: 8   LHVHTVLSPC-GDLIMTPQNIIQTAEAKGIDILAITDHNS---AENLEVALKLAKSSTVN 63

Query: 69  PIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIV 100
            I G +++   + +L           +   +V
Sbjct: 64  IIPGMEIETKEEIHLITLFSDLKAVMSFQKLV 95


>gi|167765648|ref|ZP_02437701.1| hypothetical protein CLOSS21_00132 [Clostridium sp. SS2/1]
 gi|317497006|ref|ZP_07955334.1| glycoprotease [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167712694|gb|EDS23273.1| hypothetical protein CLOSS21_00132 [Clostridium sp. SS2/1]
 gi|291558957|emb|CBL37757.1| O-sialoglycoprotein endopeptidase [butyrate-producing bacterium
           SSC/2]
 gi|316895666|gb|EFV17820.1| glycoprotease [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 342

 Score = 39.0 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 6/39 (15%), Positives = 12/39 (30%), Gaps = 6/39 (15%)

Query: 33  LDKIAADQQPAIAITDTNNLF--SALEF--SQKACAAGI 67
           ++         +AI     +    A      ++   AGI
Sbjct: 258 VEAAKELGYKKLAIA--GGVASNGAFRAKMIERCKEAGI 294


>gi|313112629|ref|ZP_07798287.1| PHP domain protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310625052|gb|EFQ08349.1| PHP domain protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 306

 Score = 39.0 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNL 52
          L  HS+ S  +G++ ++ +    A      +AI+D + L
Sbjct: 26 LHNHSTCS--DGSVPIHRLPLMAARAGLDTMAISDHDTL 62


>gi|281413115|ref|YP_003347194.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotoga naphthophila RKU-10]
 gi|281374218|gb|ADA67780.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotoga naphthophila RKU-10]
          Length = 181

 Score = 39.0 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 845 VGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLE 883
           +G   A+ I+E    + PF S ED     D   +  + LE
Sbjct: 137 IGEVKAKAIVEYREKNGPFRSPEDLL---DVPGIGEKTLE 173


>gi|170289532|ref|YP_001739770.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Thermotoga sp. RQ2]
 gi|170177035|gb|ACB10087.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Thermotoga sp. RQ2]
          Length = 181

 Score = 39.0 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 845 VGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLE 883
           +G   A+ I+E    + PF S ED     D   +  + LE
Sbjct: 137 IGEVKAKAIVEYREKNGPFRSPEDLL---DVPGIGEKTLE 173


>gi|15643810|ref|NP_228858.1| comEA protein-related protein [Thermotoga maritima MSB8]
 gi|4981594|gb|AAD36129.1|AE001765_8 comEA protein-related protein [Thermotoga maritima MSB8]
          Length = 181

 Score = 39.0 bits (89), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 845 VGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLE 883
           +G   A+ I+E    + PF S ED     D   +  + LE
Sbjct: 137 IGEVKAKAIVEYREKNGPFRSPEDLL---DVPGIGEKTLE 173


>gi|256838784|ref|ZP_05544294.1| phosphotransferase domain-containing protein [Parabacteroides sp.
          D13]
 gi|256739703|gb|EEU53027.1| phosphotransferase domain-containing protein [Parabacteroides sp.
          D13]
          Length = 347

 Score = 39.0 bits (89), Expect = 4.5,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ +S  +G +  +  + +   +   AIAITD 
Sbjct: 50 HTHTVFS--DGLVWPDARIYEAWQEGLDAIAITDH 82


>gi|253731755|ref|ZP_04865920.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253724484|gb|EES93213.1| DNA-directed DNA polymerase IV beta subunit [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
          Length = 428

 Score = 39.0 bits (89), Expect = 4.5,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +GA S+ ++++   A     + ITD 
Sbjct: 195 HMHTTYS--DGAFSIRDMVEANIAKGYKFMVITDH 227


>gi|218264190|ref|ZP_03478074.1| hypothetical protein PRABACTJOHN_03764 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222236|gb|EEC94886.1| hypothetical protein PRABACTJOHN_03764 [Parabacteroides johnsonii
           DSM 18315]
          Length = 404

 Score = 39.0 bits (89), Expect = 4.5,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             H++YS  +G   ++ +        +  + I+D 
Sbjct: 178 HNHTNYS--DGRCKISELRKLAIECGREYVGISDH 210


>gi|217967490|ref|YP_002352996.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Dictyoglomus turgidum DSM 6724]
 gi|217336589|gb|ACK42382.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Dictyoglomus turgidum DSM 6724]
          Length = 187

 Score = 39.0 bits (89), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLES 884
           L ++ G+G T A+ I+E    + PF S ED     + K +  + LE 
Sbjct: 137 LESLPGIGPTLAQRIIEYREENGPFGSAEDLL---NVKGIGEKKLER 180


>gi|45361335|ref|NP_989245.1| kinesin-like protein KIF22 [Xenopus (Silurana) tropicalis]
 gi|82202386|sp|Q6P3R1|KIF22_XENTR RecName: Full=Kinesin-like protein KIF22; AltName:
           Full=Chromokinesin kid
 gi|39645862|gb|AAH63896.1| kinesin family member 22 [Xenopus (Silurana) tropicalis]
          Length = 639

 Score = 39.0 bits (89), Expect = 4.5,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFA 888
           L +++ +G   A+ I+     + PF ++ED       + ++ + + S + A
Sbjct: 584 LKSLQKIGDKKAKLIIGWREVNGPFKNVEDL---ASLEGISAKQVTSFIKA 631


>gi|152967378|ref|YP_001363162.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Kineococcus radiotolerans SRS30216]
 gi|151361895|gb|ABS04898.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Kineococcus radiotolerans SRS30216]
          Length = 304

 Score = 39.0 bits (89), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  + GVG   A  I+     + PF  +ED         +  +VL+ L
Sbjct: 254 LDGLPGVGEVLAGRIVAWREENGPFRDVEDLGE---VPGIGPKVLDGL 298


>gi|301307875|ref|ZP_07213831.1| putative PHP domain protein [Bacteroides sp. 20_3]
 gi|300834218|gb|EFK64832.1| putative PHP domain protein [Bacteroides sp. 20_3]
          Length = 347

 Score = 39.0 bits (89), Expect = 4.5,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ +S  +G +  +  + +   +   AIAITD 
Sbjct: 50 HTHTVFS--DGLVWPDARIYEAWQEGLDAIAITDH 82


>gi|289643005|ref|ZP_06475138.1| RNA binding S1 domain protein [Frankia symbiont of Datisca
           glomerata]
 gi|289507227|gb|EFD28193.1| RNA binding S1 domain protein [Frankia symbiont of Datisca
           glomerata]
          Length = 850

 Score = 39.0 bits (89), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 8/48 (16%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSR--VDSKKLNRRVLE 883
           L  + G+G   A +I+    A  PF S      R  VD  +L  +  E
Sbjct: 525 LTRVSGIGEGLAENIVRHRDAHGPFRS-----RRALVDVPRLGPKAFE 567


>gi|309319920|pdb|3KM8|A Chain A, Crystal Structuore Of Adenosine Deaminase From Mus
          Musculus Complexed With 9-Deazainosine
 gi|309319921|pdb|3KM8|B Chain B, Crystal Structuore Of Adenosine Deaminase From Mus
          Musculus Complexed With 9-Deazainosine
          Length = 352

 Score = 39.0 bits (89), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 12/46 (26%)

Query: 5  LEKSPSF----VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAI 46
          + ++P+F    V L VH     L+GA+    IL          IA+
Sbjct: 1  MAQTPAFNKPKVELHVH-----LDGAIKPETILYFGKKRG---IAL 38


>gi|168704922|ref|ZP_02737199.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Gemmata obscuriglobus UQM 2246]
          Length = 230

 Score = 39.0 bits (89), Expect = 4.6,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 844 GVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           GVG   A  I+ A A KPFDS+ D   RV  K +  + L+ L
Sbjct: 185 GVGPVMAHAIVTARATKPFDSVNDL-DRV--KGIGAKTLDKL 223


>gi|71059839|emb|CAJ18463.1| Ada [Mus musculus]
          Length = 352

 Score = 39.0 bits (89), Expect = 4.6,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 12/46 (26%)

Query: 5  LEKSPSF----VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAI 46
          + ++P+F    V L VH     L+GA+    IL          IA+
Sbjct: 1  MAQTPAFNKPKVELHVH-----LDGAIKPETILYFGKKRG---IAL 38


>gi|55670511|pdb|1W1I|E Chain E, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
          Cd26) In Complex With Adenosine Deaminase
 gi|55670512|pdb|1W1I|F Chain F, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
          Cd26) In Complex With Adenosine Deaminase
 gi|55670513|pdb|1W1I|G Chain G, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
          Cd26) In Complex With Adenosine Deaminase
 gi|55670514|pdb|1W1I|H Chain H, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
          Cd26) In Complex With Adenosine Deaminase
          Length = 357

 Score = 39.0 bits (89), Expect = 4.6,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 9/30 (30%)

Query: 5  LEKSPSF----VHLQVHSSYSLLEGALSLN 30
          + ++P+F    V L VH     L+GA+   
Sbjct: 1  MAQTPAFDKPKVELHVH-----LDGAIKPE 25


>gi|317499052|ref|ZP_07957333.1| PHP domain-containing protein [Lachnospiraceae bacterium
          5_1_63FAA]
 gi|316893702|gb|EFV15903.1| PHP domain-containing protein [Lachnospiraceae bacterium
          5_1_63FAA]
          Length = 275

 Score = 39.0 bits (89), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA--GIQPII 71
          L +HS+ S  +G  +   I+ K+ A      ++TD + +    E    A      ++ I 
Sbjct: 4  LHIHSTCS--DGTFTPKQIVQKVIAKGLYGFSLTDHDTVDGIPE--ILAIDLPDDLKFIP 59

Query: 72 GCQLDIDMQDN 82
          G ++  D    
Sbjct: 60 GIEISCDALHR 70


>gi|256850961|ref|ZP_05556350.1| competence protein [Lactobacillus jensenii 27-2-CHN]
 gi|260661175|ref|ZP_05862089.1| competence protein [Lactobacillus jensenii 115-3-CHN]
 gi|282934124|ref|ZP_06339402.1| competence protein ComEA [Lactobacillus jensenii 208-1]
 gi|256616023|gb|EEU21211.1| competence protein [Lactobacillus jensenii 27-2-CHN]
 gi|260548112|gb|EEX24088.1| competence protein [Lactobacillus jensenii 115-3-CHN]
 gi|281301738|gb|EFA94004.1| competence protein ComEA [Lactobacillus jensenii 208-1]
          Length = 216

 Score = 39.0 bits (89), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 4/40 (10%)

Query: 844 GVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVL 882
           GVG   A  I+     + PF S++D         +  + L
Sbjct: 171 GVGQKKAEQIIAYREQNGPFKSVDDL---TKVSGIGEKTL 207


>gi|297205843|ref|ZP_06923238.1| competence protein ComEA [Lactobacillus jensenii JV-V16]
 gi|297148969|gb|EFH29267.1| competence protein ComEA [Lactobacillus jensenii JV-V16]
          Length = 216

 Score = 39.0 bits (89), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 4/40 (10%)

Query: 844 GVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVL 882
           GVG   A  I+     + PF S++D         +  + L
Sbjct: 171 GVGQKKAEQIIAYREQNGPFKSVDDL---TKVSGIGEKTL 207


>gi|60594441|pdb|2BGN|E Chain E, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide
          Trp2-Tat (1-9) Bound To The Active Site Of Dipeptidyl
          Peptidase Iv (Cd26)
 gi|60594442|pdb|2BGN|F Chain F, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide
          Trp2-Tat (1-9) Bound To The Active Site Of Dipeptidyl
          Peptidase Iv (Cd26)
 gi|60594443|pdb|2BGN|G Chain G, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide
          Trp2-Tat (1-9) Bound To The Active Site Of Dipeptidyl
          Peptidase Iv (Cd26)
 gi|60594444|pdb|2BGN|H Chain H, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide
          Trp2-Tat (1-9) Bound To The Active Site Of Dipeptidyl
          Peptidase Iv (Cd26)
          Length = 363

 Score = 39.0 bits (89), Expect = 4.6,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 9/30 (30%)

Query: 5  LEKSPSF----VHLQVHSSYSLLEGALSLN 30
          + ++P+F    V L VH     L+GA+   
Sbjct: 1  MAQTPAFDKPKVELHVH-----LDGAIKPE 25


>gi|312375964|gb|EFR23195.1| hypothetical protein AND_13349 [Anopheles darlingi]
          Length = 329

 Score = 39.0 bits (89), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/261 (5%), Positives = 57/261 (21%), Gaps = 13/261 (4%)

Query: 578 TLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQALEGMQP 637
             +  ++ L  +     +   +         +        L         +         
Sbjct: 65  NPSEYEEMLLLVEPTCRRWSCACGDCGGIGAFDYCAASKDLCQPPGARHVVCNGRNFGSV 124

Query: 638 DCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVS----------IHPLIDPMLKETQG 687
                +I +   YR   ++      N                      P +  M +    
Sbjct: 125 CREPKLIKMNDRYRKQILEFHNKLRNNIACGYFRRYAEASSMEQLEWDPKLARMAEYNAR 184

Query: 688 VIIYQEQVMQIAQLLSGYSLSEADVLRRAMG---KKIKEEMDKQKERFISGASKNGISKT 744
              +     +  +       + A      +     +  ++      +      +  + + 
Sbjct: 185 TCTFAHDECRNTRKYRRVGQNLAINWFHGVNVTASQAIDKFQNHWYQEHGQGKQKLVDRY 244

Query: 745 IAVNIFELLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
              ++   +  F       +H+   A++ + +          +L  + +        + +
Sbjct: 245 TLPSMQAGIGHFTQMIHADAHSIGCAMVRFASVMKGLAVTQYYLVCNYSEGNVYERPVYR 304

Query: 805 FCQDARQFNIQIMPPSVNTPC 825
             +   +        +    C
Sbjct: 305 KGKRCSKCKYGCSTGTFKCLC 325


>gi|221633160|ref|YP_002522385.1| phosphoesterase PHP, N-terminal [Thermomicrobium roseum DSM 5159]
 gi|221156732|gb|ACM05859.1| phosphoesterase PHP, N-terminal [Thermomicrobium roseum DSM 5159]
          Length = 321

 Score = 39.0 bits (89), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 10/80 (12%)

Query: 11 FVH----LQVHSSYSLL--EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          F H    L +H+    L  +G  ++  ++D +A  +    A+ D + + +  +  +    
Sbjct: 24 FAHDAVDLHLHT----LASDGRWTVAELIDYLATKRFRVAALCDHDTMAAVDDAIELGKK 79

Query: 65 AGIQPIIGCQLDIDMQDNLK 84
           G+  + G ++     D   
Sbjct: 80 YGLVIVPGVEVTTRWADRQW 99


>gi|313681124|ref|YP_004058863.1| soluble ligand binding domain [Oceanithermus profundus DSM 14977]
 gi|313153839|gb|ADR37690.1| Soluble ligand binding domain [Oceanithermus profundus DSM 14977]
          Length = 171

 Score = 39.0 bits (89), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 6/47 (12%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L A+ G+G   AR I+      P+ +L +   RV    +  R LE L
Sbjct: 125 LEAVPGIGPALARRIVAYR---PYRTLAELV-RVP--GIGPRTLERL 165


>gi|313884436|ref|ZP_07818197.1| PHP domain protein [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620220|gb|EFR31648.1| PHP domain protein [Eremococcus coleocola ACS-139-V-Col8]
          Length = 489

 Score = 39.0 bits (89), Expect = 4.7,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 11/68 (16%)

Query: 12  VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA-----G 66
             L  H+ +S  +   S   +L +        +AITD N          +A A       
Sbjct: 180 TELHSHTLHS--DAQQSTEYLLQQAQEQGIDWLAITDHNTT----TAHDEAAAHQNYDTQ 233

Query: 67  IQPIIGCQ 74
           +  I G +
Sbjct: 234 VHLIPGME 241


>gi|297626348|ref|YP_003688111.1| Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS)
            [Propionibacterium freudenreichii subsp. shermanii
            CIRM-BIA1]
 gi|296922113|emb|CBL56681.1| Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS)
            [Propionibacterium freudenreichii subsp. shermanii
            CIRM-BIA1]
          Length = 615

 Score = 39.0 bits (89), Expect = 4.7,   Method: Composition-based stats.
 Identities = 5/54 (9%), Positives = 16/54 (29%), Gaps = 5/54 (9%)

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
            +         A+  G  + LA  V  ++         + ++   + +   +   
Sbjct: 2    IRTHDAGTLRASNEGETVTLAGWVAHRRDHG-----GVAFIDLRDASGVAQVVI 50


>gi|226312044|ref|YP_002771938.1| stage IV sporulation protein A [Brevibacillus brevis NBRC 100599]
 gi|226094992|dbj|BAH43434.1| stage IV sporulation protein A [Brevibacillus brevis NBRC 100599]
          Length = 493

 Score = 39.0 bits (89), Expect = 4.7,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 71/227 (31%), Gaps = 11/227 (4%)

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDRLYVNLQRHRG 191
               +QE  T G+++ T GS   I R          E+ +   K++ G    + +   R 
Sbjct: 138 TRKVIQEHSTIGIVVTTDGSIAEIPR---VGYIDAEERVVNELKEV-GKPFVIVVNSTRP 193

Query: 192 YDRYRESQVVQLAYTHELPLVATNNSLFLSEE-----DYEAHDVLMAVAHSTVVSQKDRP 246
                ++  VQL   +++P+VA +      +E          +  +   +  + S     
Sbjct: 194 RSDEAQNLRVQLQEKYDVPVVALSVDHMTEQEILLLMREVLFEFPVHEVNVNLPSWVMVL 253

Query: 247 RVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQKE 306
                        +     D+    +    +     +     A +    + +   +I   
Sbjct: 254 ENGHWLRQNYEEAVRETVQDIRRLRDVDRVVGFFNDYDFVERASLAGMHMGQGIAEIDLY 313

Query: 307 EENELRNKAVAGLEVRLAQGAIAKGYHAQD--YRQRLDFELNVIARM 351
             +EL ++ +  +      G        Q+  + +R   ++     M
Sbjct: 314 APDELYDRILMEIVGVEINGKDHLLKIMQEFAHAKREFDQVAEALHM 360


>gi|153953522|ref|YP_001394287.1| DNA-binding competence protein [Clostridium kluyveri DSM 555]
 gi|219854144|ref|YP_002471266.1| hypothetical protein CKR_0801 [Clostridium kluyveri NBRC 12016]
 gi|146346403|gb|EDK32939.1| Predicted DNA-binding competence protein [Clostridium kluyveri DSM
           555]
 gi|219567868|dbj|BAH05852.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 200

 Score = 39.0 bits (89), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDF--CSRVDSKKLNR 879
           L  I G+G  TA+ IM+    +  F S+ED     R+  K L +
Sbjct: 149 LKTIPGIGDVTAQKIMDYREQNGGFSSIEDLKNVDRIGDKTLEK 192


>gi|148655572|ref|YP_001275777.1| helix-hairpin-helix DNA-binding motif-containing protein
           [Roseiflexus sp. RS-1]
 gi|148567682|gb|ABQ89827.1| helix-hairpin-helix motif [Roseiflexus sp. RS-1]
          Length = 220

 Score = 39.0 bits (89), Expect = 4.7,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDF 868
           L A+ G+G+  A  I+E    + PF S++D 
Sbjct: 168 LDALPGIGSVLANRIVEWREREGPFRSVDDL 198


>gi|319795293|ref|YP_004156933.1| php domain protein [Variovorax paradoxus EPS]
 gi|315597756|gb|ADU38822.1| PHP domain protein [Variovorax paradoxus EPS]
          Length = 285

 Score = 39.0 bits (89), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 2/83 (2%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L  HS  S  +G L+   +  + AA+     A+TD + +      +  A   G++ + G 
Sbjct: 9  LHCHSVVS--DGTLTPEALAARAAANGVELWALTDHDEVGGQHRAAAAARENGMRYLTGT 66

Query: 74 QLDIDMQDNLKMTNQGKTPFPTV 96
          ++ +   +               
Sbjct: 67 EISVTFANETVHIVGLGFDPDDA 89


>gi|254383014|ref|ZP_04998369.1| PHP domain containing protein [Streptomyces sp. Mg1]
 gi|194341914|gb|EDX22880.1| PHP domain containing protein [Streptomyces sp. Mg1]
          Length = 304

 Score = 39.0 bits (89), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 14 LQVHSSYSLLEGALSLNNILDKI-AADQQPAIAITDT 49
          L  HS  S  +GALS    + ++        +A+TD 
Sbjct: 14 LHTHSDQS--DGALSPEE-VGRLYREAGYDFLAVTDH 47


>gi|6680636|ref|NP_031424.1| adenosine deaminase [Mus musculus]
 gi|113340|sp|P03958|ADA_MOUSE RecName: Full=Adenosine deaminase; AltName: Full=Adenosine
          aminohydrolase
 gi|157834538|pdb|2ADA|A Chain A, Atomic Structure Of Adenosine Deaminase Complexed With A
          Transition-State Analog: Understanding Catalysis And
          Immunodeficiency Mutations
 gi|309091|gb|AAA37173.1| adenosine deaminase (EC 3.5.4.4) [Mus musculus]
 gi|1657629|gb|AAC08442.1| adenosine deaminase [Mus musculus]
 gi|12805229|gb|AAH02075.1| Ada protein [Mus musculus]
 gi|19548714|gb|AAL90754.1| adenosine deaminase [Mus musculus]
 gi|19548716|gb|AAL90755.1| adenosine deaminase [Mus musculus]
 gi|26344780|dbj|BAC36039.1| unnamed protein product [Mus musculus]
 gi|71059777|emb|CAJ18432.1| Ada [Mus musculus]
 gi|123240044|emb|CAM15179.1| adenosine deaminase [Mus musculus]
 gi|148674404|gb|EDL06351.1| adenosine deaminase, isoform CRA_a [Mus musculus]
 gi|148674405|gb|EDL06352.1| adenosine deaminase, isoform CRA_a [Mus musculus]
          Length = 352

 Score = 39.0 bits (89), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 12/46 (26%)

Query: 5  LEKSPSF----VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAI 46
          + ++P+F    V L VH     L+GA+    IL          IA+
Sbjct: 1  MAQTPAFNKPKVELHVH-----LDGAIKPETILYFGKKRG---IAL 38


>gi|327400013|ref|YP_004340852.1| PHP domain-containing protein [Archaeoglobus veneficus SNP6]
 gi|327315521|gb|AEA46137.1| PHP domain protein [Archaeoglobus veneficus SNP6]
          Length = 218

 Score = 39.0 bits (89), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L VHS  +L +G L  + I  ++AA     +AITD 
Sbjct: 4  LHVHS--TLSDGELIPSEIARRMAAMGNEGVAITDH 37


>gi|291528958|emb|CBK94544.1| competence protein ComEA helix-hairpin-helix repeat region
           [Eubacterium rectale M104/1]
          Length = 235

 Score = 39.0 bits (89), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873
           L A+ G+G + A+ I+E    +  F S+ED  +RV 
Sbjct: 184 LMALSGIGESKAKSIVEDRAKNGLFSSIED-ITRVS 218


>gi|238923974|ref|YP_002937490.1| unspecific high-affinity DNA-binding protein [Eubacterium rectale
           ATCC 33656]
 gi|238875649|gb|ACR75356.1| unspecific high-affinity DNA-binding protein [Eubacterium rectale
           ATCC 33656]
          Length = 243

 Score = 39.0 bits (89), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVD 873
           L A+ G+G + A+ I+E    +  F S+ED  +RV 
Sbjct: 192 LMALSGIGESKAKSIVEDRAKNGLFSSIED-ITRVS 226


>gi|284047184|ref|YP_003397524.1| PHP domain protein [Conexibacter woesei DSM 14684]
 gi|283951405|gb|ADB54149.1| PHP domain protein [Conexibacter woesei DSM 14684]
          Length = 299

 Score = 39.0 bits (89), Expect = 4.9,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          + K P+F  LQ HS +S  +G L   +++++ AA     +A++D + +    E       
Sbjct: 1  MTK-PTF-DLQSHSLHS--DGVLPAADVVERAAAAGVELLALSDHDTVDGVDEALAAGAR 56

Query: 65 AGI 67
           G+
Sbjct: 57 HGV 59


>gi|90407102|ref|ZP_01215291.1| hypothetical protein PCNPT3_02640 [Psychromonas sp. CNPT3]
 gi|90311824|gb|EAS39920.1| hypothetical protein PCNPT3_02640 [Psychromonas sp. CNPT3]
          Length = 104

 Score = 39.0 bits (89), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLE 883
            A IKG+G   A  I++       F  +ED     +   + + +LE
Sbjct: 54  FAMIKGLGEKKAGEIVKYRETYGKFKKIEDLL---NVTGIGKMLLE 96


>gi|334869|gb|AAA47794.1| envelope protein [Simian foamy virus]
          Length = 985

 Score = 39.0 bits (89), Expect = 4.9,   Method: Composition-based stats.
 Identities = 33/311 (10%), Positives = 76/311 (24%), Gaps = 20/311 (6%)

Query: 451 SLQAKAALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR 510
           + + K  L D+        +      ++   DP      Q       F    L      +
Sbjct: 181 TQETKVLLADMINEEMNDLANQMIDFEIPLGDPRDQKQYQHQKCFQEFAHCYLVKYKTTK 240

Query: 511 LLEISQKLEGLYRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIK 570
               S  +         H              VP  +          +  +     G   
Sbjct: 241 GWPSSTVIADQCPLPGNHPTVQYAHQNIWDYYVPFEQIRPEGWNSKSY-YEDARIGGFYI 299

Query: 571 FDFLGLKTLTLLQKSLDFLAQRGVKVDLSLIPFDDHETYHLLTTKGTLGIFQLESSGMRQ 630
             +L   + T +    D +  +   +DL+    ++     L+           + +   +
Sbjct: 300 PKWLRNNSYTHVLFCSDQIYGKWYNIDLTAQERENLLVQKLINLAKGNSSQLKDRAMPAE 359

Query: 631 ALEGMQPDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVII 690
             +  + D    I  L    R                 E +  ++               
Sbjct: 360 WDKQGKADLFRQINTLDVCNR----------------PEMVFLLNSSYYEFSLWEGDCGF 403

Query: 691 YQEQVMQIAQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIF 750
            ++ V Q   L   +     +   + +          ++E+  +  S     K +    +
Sbjct: 404 TRQNVTQANSLCKDF---YNNSKWQKLHPYSCRFWRYKQEKEETKCSNGEKKKCLYYPQW 460

Query: 751 ELLAKFADYGF 761
           +      D+GF
Sbjct: 461 DTPEALYDFGF 471


>gi|1518868|gb|AAB07142.1| adenosine deaminase (ADA) [Mus musculus]
          Length = 352

 Score = 39.0 bits (89), Expect = 4.9,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 9/30 (30%)

Query: 5  LEKSPSF----VHLQVHSSYSLLEGALSLN 30
          + ++P+F    V L VH     L+GA+   
Sbjct: 1  MAQTPAFNKPKVELHVH-----LDGAIKPE 25


>gi|169334970|ref|ZP_02862163.1| hypothetical protein ANASTE_01376 [Anaerofustis stercorihominis
          DSM 17244]
 gi|169257708|gb|EDS71674.1| hypothetical protein ANASTE_01376 [Anaerofustis stercorihominis
          DSM 17244]
          Length = 154

 Score = 39.0 bits (89), Expect = 4.9,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +H+  S  +    L +I+          IAITD 
Sbjct: 7  HIHTDLS-GDSNAKLEDIVHTAIKKNLSEIAITDH 40


>gi|289581691|ref|YP_003480157.1| PHP domain protein [Natrialba magadii ATCC 43099]
 gi|289531244|gb|ADD05595.1| PHP domain protein [Natrialba magadii ATCC 43099]
          Length = 268

 Score = 39.0 bits (89), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 11 FVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQ-KACAAGIQP 69
          +  L VH++ S  +G+L L  + D  A      +AITD + L     F +      GI  
Sbjct: 3  YADLHVHTTRS--DGSLELEAVPDAAARADLRVVAITDHDRLQ---PFDEPMCERDGITL 57

Query: 70 IIGCQLDIDMQDNLKMTNQ 88
          + G +L +++Q +    +Q
Sbjct: 58 VNGIELRVEIQGDGDTPSQ 76


>gi|212224226|ref|YP_002307462.1| hypothetical protein TON_1077 [Thermococcus onnurineus NA1]
 gi|212009183|gb|ACJ16565.1| phosphohydrolase [Thermococcus onnurineus NA1]
          Length = 216

 Score = 39.0 bits (89), Expect = 4.9,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
          L  H++YS  +G  S+   +          + I+D 
Sbjct: 6  LHTHTTYS--DGTGSVPENIAAAEQKGLRLLGISDH 39


>gi|78212889|ref|YP_381668.1| phosphoesterase PHP-like [Synechococcus sp. CC9605]
 gi|78197348|gb|ABB35113.1| Phosphoesterase PHP-like [Synechococcus sp. CC9605]
          Length = 215

 Score = 39.0 bits (89), Expect = 4.9,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
            H+  S  +G+L    ++ +        +A+TD ++
Sbjct: 24 HCHTVCS--DGSLEPIELIWQATERGLKHLAVTDHHS 58


>gi|296200513|ref|XP_002747684.1| PREDICTED: adenosine deaminase [Callithrix jacchus]
          Length = 363

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 9/30 (30%)

Query: 5  LEKSPSF----VHLQVHSSYSLLEGALSLN 30
          + ++P+F    V L VH     L+GA+   
Sbjct: 1  MAQTPAFDKPKVELHVH-----LDGAIKPE 25


>gi|212710794|ref|ZP_03318922.1| hypothetical protein PROVALCAL_01862 [Providencia alcalifaciens
          DSM 30120]
 gi|212686491|gb|EEB46019.1| hypothetical protein PROVALCAL_01862 [Providencia alcalifaciens
          DSM 30120]
          Length = 245

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 11/42 (26%)

Query: 14 LQVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  H+     ++S      ++N    + AA      AITD  
Sbjct: 6  LHAHTIASTHAFS------TVNEYFAEAAACGMKLFAITDHG 41


>gi|169832211|ref|YP_001718193.1| helix-hairpin-helix repeat-containing competence protein ComEA
           [Candidatus Desulforudis audaxviator MP104C]
 gi|169639055|gb|ACA60561.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 190

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 844 GVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           G+G + A  I+     + PF S++D     +   +  + LE L
Sbjct: 144 GIGPSLAERIIRYREQNGPFSSVDDLK---NVSGIGEKRLEGL 183


>gi|167040993|ref|YP_001663978.1| phosphoesterase domain-containing protein [Thermoanaerobacter sp.
           X514]
 gi|300913796|ref|ZP_07131113.1| PHP domain protein [Thermoanaerobacter sp. X561]
 gi|307725517|ref|YP_003905268.1| PHP domain-containing protein [Thermoanaerobacter sp. X513]
 gi|166855233|gb|ABY93642.1| phosphoesterase PHP domain protein [Thermoanaerobacter sp. X514]
 gi|300890481|gb|EFK85626.1| PHP domain protein [Thermoanaerobacter sp. X561]
 gi|307582578|gb|ADN55977.1| PHP domain protein [Thermoanaerobacter sp. X513]
          Length = 524

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 3   QYLEKSPSF--VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           Q +    S+    L VHS++S  +G  +   I++         + ITD 
Sbjct: 183 QSIPSDSSWIPAQLHVHSNFS--DGKKTPQEIVNIYKGMGYKVVYITDH 229


>gi|56477511|ref|YP_159100.1| ComE operon protein 1-related protein [Aromatoleum aromaticum EbN1]
 gi|56313554|emb|CAI08199.1| ComE operon protein 1-related protein [Aromatoleum aromaticum EbN1]
          Length = 155

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCS 870
           L  +KG+G   A+ I+E    +  F S++D   
Sbjct: 94  LETVKGIGPAKAKAIIEYRKANGAFASVDDLTK 126


>gi|150391281|ref|YP_001321330.1| HisJ family histidinol phosphate phosphatase [Alkaliphilus
          metalliredigens QYMF]
 gi|149951143|gb|ABR49671.1| histidinol phosphate phosphatase HisJ family [Alkaliphilus
          metalliredigens QYMF]
          Length = 276

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +HS YS  + +  L +I           I ITD 
Sbjct: 7  HIHSQYS-SDSSAKLEDIAHSAITKGLKEIVITDH 40


>gi|108803335|ref|YP_643272.1| PHP-like protein [Rubrobacter xylanophilus DSM 9941]
 gi|108764578|gb|ABG03460.1| PHP-like protein [Rubrobacter xylanophilus DSM 9941]
          Length = 574

 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H+  +  +G   L+ + +         +A+TD 
Sbjct: 341 LHSHT--TATDGRSGLHEMAEAARERGYEYLAVTDH 374


>gi|237733767|ref|ZP_04564248.1| DNA polymerase III subunit alpha [Mollicutes bacterium D7]
 gi|229383105|gb|EEO33196.1| DNA polymerase III subunit alpha [Coprobacillus sp. D7]
          Length = 67

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 1007 KKTRKGSRIGWVTFSEPAKEYEANFF 1032
               +KG  + +V   +   E +A  F
Sbjct: 2    IVDKKGQEMCFVDGYDETGEVDAVVF 27


>gi|167766771|ref|ZP_02438824.1| hypothetical protein CLOSS21_01279 [Clostridium sp. SS2/1]
 gi|167711525|gb|EDS22104.1| hypothetical protein CLOSS21_01279 [Clostridium sp. SS2/1]
 gi|291560703|emb|CBL39503.1| Predicted metal-dependent phosphoesterases (PHP family)
          [butyrate-producing bacterium SSC/2]
          Length = 275

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAA--GIQPII 71
          L +HS+ S  +G  +   I+ K+ A      ++TD + +    E    A      ++ I 
Sbjct: 4  LHIHSTCS--DGTFTPKQIVQKVIAKGLYGFSLTDHDTVDGIPE--ILAMDLPDDLKFIP 59

Query: 72 GCQLDIDMQDN 82
          G ++  D    
Sbjct: 60 GIEISCDALHR 70


>gi|118345564|ref|XP_976612.1| Leishmanolysin family protein [Tetrahymena thermophila]
 gi|89288029|gb|EAR86017.1| Leishmanolysin family protein [Tetrahymena thermophila SB210]
          Length = 1460

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 45/675 (6%), Positives = 134/675 (19%), Gaps = 68/675 (10%)

Query: 215  NNSLFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENT 274
            N    ++       D                 R       +        F++   +  N 
Sbjct: 732  NPKTCINCAKGYKFDFSNKNCVPKCNQDDFLDRYGNCQQCQPPCATCEDFNNNCISCVNG 791

Query: 275  VEIARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHA 334
              +    +     +             +      +  R+         L      +    
Sbjct: 792  YTLNTNYNSCELKNQKCHESCNSCNRYNDSYGCTS-CRDGMYLNSGRCLPCNIECQTCED 850

Query: 335  QDYRQRLDFELNVIARMKFSGYFLIVADFIQW-AKKNNIPVGPGRGSGAGSVT------- 386
              Y+     +   +++MK                   +   G  +   +G          
Sbjct: 851  ASYKCTSCKQNEYLSKMKCKQCHASCLTCSDKETNCTSCKEGFQKDYNSGLCVPTIKNCQ 910

Query: 387  -------AYALTITD-------IDPLRFSLLFERFLNPDRMSMPDFDIDFCQDRRDEVIR 432
                    Y     +       ++P R +     +++  + +  + +   C   +  +  
Sbjct: 911  FDEYLDKNYQCQKCNSPCVSCYLNPNRCTSCISGYVHNTQTNQCEINDPICDYDQ-FLDS 969

Query: 433  YVQNKYGHERVAQIITFGSLQAK-----AALRDVGRALQMPYSQVDRLCKLIPNDPAHPV 487
            Y   K  H+  A    + +           LR+     +                    +
Sbjct: 970  YKNCKPCHQSCATCEGYSTKCTSCKNGFILLRNACYEQRCSEGFFLNYLGRCVRCDDSCL 1029

Query: 488  SLQAIADD----SRFREARLADPSVDRLLEISQKLEGLYRHASTHAAGIVIGDRPLSQLV 543
                  D+    +       +     ++L  +Q           + +      +      
Sbjct: 1030 KCDTFKDNCTECANGFTYEASSQRCIKILNNNQCHPTCQECNQPNNSSACTSCKE----- 1084

Query: 544  PMYRDVRSDLPV-----TQFNMKWIEKAGLIKFD---FLGLKTLTL--------LQKSLD 587
             + +D  S L V      QF+          K +   F                +  +  
Sbjct: 1085 GLQKDYNSGLCVPTIKNCQFDEYLDINYQCQKCNSPCFSCYLNPNQCTSCISGYVHNTQT 1144

Query: 588  FLAQRGVKVDLSLIPFDDHETYHLLTTKGTLG------IFQLESSG--MRQALEGMQPDC 639
               +    +       D ++                      ++     R A    +   
Sbjct: 1145 NQCEINDPICDYDQFLDSYKNCKPCHQSCATCEGYSNKCTSCKNGFILFRNACYEQKCSE 1204

Query: 640  IEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVMQIA 699
               +       R                +      +        +            + +
Sbjct: 1205 GFFLNNFGRCVRCDDSCLKCDTFKDNCTECANGFTYEASSQKCIKILNNNQCHPTCQECS 1264

Query: 700  Q-----LLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNIFELLA 754
            Q       +  +          +    +    K+K  F +   +     +I     +   
Sbjct: 1265 QPNNSSACTSCNDGYFIFNGMCIQCSSQCLTCKRKSNFCTQCKQGFRLDSIFGRCIQDCQ 1324

Query: 755  KFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKKFCQDARQFNI 814
            +   +    +      +   +     ++     +            +I     + +    
Sbjct: 1325 QRYYFNQTNNQCQPC-LSPCENCEYYSYRCTSCIQGYKYDNDSFACEIDCKPGEYKNTIQ 1383

Query: 815  QIMPPSVNTPCVDFK 829
                 S      +F 
Sbjct: 1384 SCKQCSFPCLTCEFD 1398


>gi|134296281|ref|YP_001120016.1| phosphotransferase domain-containing protein [Burkholderia
          vietnamiensis G4]
 gi|134139438|gb|ABO55181.1| PHP C-terminal domain protein [Burkholderia vietnamiensis G4]
          Length = 276

 Score = 38.6 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS+ S  +G LS  ++  +  A      A+TD +
Sbjct: 5  LHCHSNVS--DGLLSPADVARRAHAGGVTLWALTDHD 39


>gi|268680297|ref|YP_003304728.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268618328|gb|ACZ12693.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 80

 Score = 38.6 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 843 KGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAG 889
           +G+G   A+ I+E       F+++++    V  K +  ++LES + + 
Sbjct: 33  RGIGEKKAQAIVEYRTQKGKFNTIDEL---VHVKGIGPKILES-IKSD 76


>gi|182416382|ref|YP_001821448.1| phosphotransferase domain-containing protein [Opitutus terrae
          PB90-1]
 gi|177843596|gb|ACB77848.1| PHP domain protein [Opitutus terrae PB90-1]
          Length = 387

 Score = 38.6 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ +S  +G++  N  + +   D   AIA+TD 
Sbjct: 53 HQHTVFS--DGSVWPNIRVQEAERDGLDAIAVTDH 85


>gi|23005300|ref|ZP_00048191.1| COG2183: Transcriptional accessory protein [Magnetospirillum
           magnetotacticum MS-1]
          Length = 228

 Score = 38.6 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 12/58 (20%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKK---LNRRVLESLVFAGALD 892
           LA + G+G + A  I+    A+ PF       +R   KK   L  +  E L  AG L 
Sbjct: 105 LAQVSGLGESVAEKIVAHRDANGPFR------TRAALKKVPGLGPKTFE-LA-AGFLR 154


>gi|325519091|gb|EGC98579.1| putative phosphoesterase [Burkholderia sp. TJI49]
          Length = 256

 Score = 38.6 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS+ S  +G LS  ++  +  A      A+TD +
Sbjct: 5  LHCHSNVS--DGLLSPADVARRAQAGGVTLWALTDHD 39


>gi|256394002|ref|YP_003115566.1| hypothetical protein Caci_4865 [Catenulispora acidiphila DSM 44928]
 gi|256360228|gb|ACU73725.1| PHP domain protein [Catenulispora acidiphila DSM 44928]
          Length = 332

 Score = 38.6 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 4/36 (11%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQP-AIAITDT 49
            +HS +S  +G   +  + +   A     A+ +TD 
Sbjct: 99  HLHSDWS--DGGSPIEEMAEAARALGHRWAV-LTDH 131


>gi|312878136|ref|ZP_07738068.1| PHP domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795094|gb|EFR11491.1| PHP domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 242

 Score = 38.6 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 1/39 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          V    H++ S      +L  ++ +        I ITD  
Sbjct: 7  VETHCHTNAS-GHAYNTLEEMVLEAQRKGLKGICITDHG 44


>gi|226330452|ref|ZP_03805970.1| hypothetical protein PROPEN_04370 [Proteus penneri ATCC 35198]
 gi|225201247|gb|EEG83601.1| hypothetical protein PROPEN_04370 [Proteus penneri ATCC 35198]
          Length = 249

 Score = 38.6 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 11/42 (26%)

Query: 14 LQVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  H+     +YS      +++    +         AITD  
Sbjct: 6  LHAHTIASTHAYS------TVSEYFQQAKKQGIQLFAITDHG 41


>gi|312622081|ref|YP_004023694.1| histidinol phosphate phosphatase hisj family
          [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202548|gb|ADQ45875.1| histidinol phosphate phosphatase HisJ family
          [Caldicellulosiruptor kronotskyensis 2002]
          Length = 266

 Score = 38.6 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +HS++S  +  +++ + + K        IA TD 
Sbjct: 5  HIHSNFS-SDSNMNMEDAVKKAIELNLEEIAFTDH 38


>gi|18426812|ref|NP_569083.1| adenosine deaminase [Rattus norvegicus]
 gi|20137184|sp|Q920P6|ADA_RAT RecName: Full=Adenosine deaminase; AltName: Full=Adenosine
          aminohydrolase
 gi|16040979|dbj|BAB69691.1| adenosine deaminase [Rattus norvegicus]
 gi|56789878|gb|AAH88116.1| Adenosine deaminase [Rattus norvegicus]
 gi|149042987|gb|EDL96561.1| adenosine deaminase, isoform CRA_a [Rattus norvegicus]
          Length = 352

 Score = 38.6 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 9/30 (30%)

Query: 5  LEKSPSF----VHLQVHSSYSLLEGALSLN 30
          + ++P+F    V L VH     L+GA+   
Sbjct: 1  MAQTPAFNKPKVELHVH-----LDGAIKPE 25


>gi|282880937|ref|ZP_06289628.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
           [Prevotella timonensis CRIS 5C-B1]
 gi|281305160|gb|EFA97229.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
           [Prevotella timonensis CRIS 5C-B1]
          Length = 505

 Score = 38.6 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 6/23 (26%), Positives = 11/23 (47%)

Query: 29  LNNILDKIAADQQPAIAITDTNN 51
           +  +++   A+   AI I D  N
Sbjct: 418 VKEVIEAAKANGYEAIIIADHGN 440


>gi|261379141|ref|ZP_05983714.1| DNA topoisomerase [Neisseria cinerea ATCC 14685]
 gi|269144414|gb|EEZ70832.1| DNA topoisomerase [Neisseria cinerea ATCC 14685]
          Length = 96

 Score = 38.6 bits (88), Expect = 5.7,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 7/56 (12%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL---VFAGA 890
           L A+ G+G   A+ I+E  A +  F S+++       K +   VL  L      GA
Sbjct: 28  LEALPGIGPAKAKAIVEYRAQNGAFKSVDEL---TKVKGIGPAVLAKLKDQASVGA 80


>gi|258654515|ref|YP_003203671.1| hypothetical protein Namu_4395 [Nakamurella multipartita DSM 44233]
 gi|258557740|gb|ACV80682.1| PHP domain protein [Nakamurella multipartita DSM 44233]
          Length = 337

 Score = 38.6 bits (88), Expect = 5.8,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS +S  +G   +  +            A+TD 
Sbjct: 102 LHAHSDWS--DGGSPIQEMTVTAQELGHEYQALTDH 135


>gi|225850003|ref|YP_002730237.1| hypothetical protein PERMA_0447 [Persephonella marina EX-H1]
 gi|225645156|gb|ACO03342.1| conserved hypothetical protein [Persephonella marina EX-H1]
          Length = 360

 Score = 38.6 bits (88), Expect = 5.8,   Method: Composition-based stats.
 Identities = 5/38 (13%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAA-DQQPAIAITDTNN 51
           +H+ +S  +     ++ + +    ++   + +TD +N
Sbjct: 51 HIHTQFSF-DSLGKPSD-IRRAMEVNEIDFVFVTDHDN 86


>gi|154174129|ref|YP_001409025.1| hypothetical protein CCV52592_0624 [Campylobacter curvus 525.92]
 gi|154174524|ref|YP_001408119.1| hypothetical protein CCV52592_1407 [Campylobacter curvus 525.92]
 gi|154175274|ref|YP_001408601.1| acetohydroxy acid synthase large subunit [Campylobacter curvus
           525.92]
 gi|153793052|gb|EAU01366.2| conserved domain protein [Campylobacter curvus 525.92]
 gi|153793108|gb|EAU00437.2| conserved domain protein [Campylobacter curvus 525.92]
 gi|153793203|gb|EAU01227.2| acetohydroxy acid synthase large subunit [Campylobacter curvus
           525.92]
          Length = 115

 Score = 38.6 bits (88), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L ++ G+G++ A  I+E      FDS+ED         +  +  E+L
Sbjct: 14  LMSLDGIGSSKADAIIEYRKANKFDSIEDLKK---VNGIGDKTYENL 57


>gi|332035638|gb|EGI72128.1| competence protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 98

 Score = 38.6 bits (88), Expect = 5.8,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           LA + G+G   A+ I++    +  F S+ D       K + +++L  L
Sbjct: 48  LAKLPGIGKKKAQAIVDYREENGEFKSVSDLSQ---VKGIGKKLLAKL 92


>gi|296454274|ref|YP_003661417.1| competence protein ComEA [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183705|gb|ADH00587.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 259

 Score = 38.6 bits (88), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883
           L +IKG+G  TA+ I++   A   + S++      D K +  + LE
Sbjct: 208 LQSIKGIGPVTAQRIIDHRTAIGGYASVDQLL---DVKGIGSKTLE 250


>gi|213691901|ref|YP_002322487.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213523362|gb|ACJ52109.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320458000|dbj|BAJ68621.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 259

 Score = 38.6 bits (88), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883
           L +IKG+G  TA+ I++   A   + S++      D K +  + LE
Sbjct: 208 LQSIKGIGPVTAQRIIDHRTAIGGYASVDQLL---DVKGIGSKTLE 250


>gi|124267436|ref|YP_001021440.1| hypothetical protein Mpe_A2249 [Methylibium petroleiphilum PM1]
 gi|124260211|gb|ABM95205.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 110

 Score = 38.6 bits (88), Expect = 5.8,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 16/34 (47%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLEDFCSRV 872
           L  +KG+G   +  +++     P+   +D   RV
Sbjct: 31  LEGVKGIGPGLSTRLLDERKKSPYKDWDDLIGRV 64


>gi|317050657|ref|YP_004111773.1| competence protein ComEA helix-hairpin-helix repeat-containing
           protein [Desulfurispirillum indicum S5]
 gi|316945741|gb|ADU65217.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Desulfurispirillum indicum S5]
          Length = 84

 Score = 38.6 bits (88), Expect = 5.9,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLES 884
           LAA+ GVG   A  I+E    + PF   ED  +RV  K + +   E 
Sbjct: 33  LAALNGVGDQRAAAIIEYREQNGPFQKPED-ITRV--KGIGKSTFER 76


>gi|195953813|ref|YP_002122103.1| PHP domain protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195933425|gb|ACG58125.1| PHP domain protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 576

 Score = 38.6 bits (88), Expect = 5.9,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +H++YS  +G  SL  ++          I I+D 
Sbjct: 348 HMHTTYS--DGKASLRQMVQACYELGYRYIVISDH 380


>gi|261210558|ref|ZP_05924851.1| DNA uptake protein [Vibrio sp. RC341]
 gi|260840343|gb|EEX66914.1| DNA uptake protein [Vibrio sp. RC341]
          Length = 103

 Score = 38.6 bits (88), Expect = 5.9,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 842 IKGVGTTTARHIME-ASADKPFDSLEDFCS 870
           +KG+G   A+ I+E   A+ PF +++D   
Sbjct: 56  LKGIGVKKAQAIVEYREANGPFLTIDDLAK 85


>gi|323466776|gb|ADX70463.1| DNA uptake protein and related DNA-binding protein-like protein
           [Lactobacillus helveticus H10]
          Length = 231

 Score = 38.6 bits (88), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
            L  + G+G   A  I+     + PF  +ED    +    +  +   SL
Sbjct: 180 GLQKLTGIGEKKAEQIIAYREQNGPFKKVEDL---MQVSGIGEKTFASL 225


>gi|260101773|ref|ZP_05752010.1| competence protein ComEA [Lactobacillus helveticus DSM 20075]
 gi|260084417|gb|EEW68537.1| competence protein ComEA [Lactobacillus helveticus DSM 20075]
          Length = 233

 Score = 38.6 bits (88), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
            L  + G+G   A  I+     + PF  +ED    +    +  +   SL
Sbjct: 182 GLQKLTGIGEKKAEQIIAYREQNGPFKKVEDL---MQVSGIGEKTFASL 227


>gi|256544544|ref|ZP_05471917.1| histidinol phosphatase [Anaerococcus vaginalis ATCC 51170]
 gi|256399869|gb|EEU13473.1| histidinol phosphatase [Anaerococcus vaginalis ATCC 51170]
          Length = 264

 Score = 38.6 bits (88), Expect = 6.0,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT-NNLF 53
          L +HS +S  +   +    +     ++   +A TD  +N  
Sbjct: 4  LHLHSHFSF-DSNTNPEENVKSAIKNKIKIMAFTDHLDNFC 43


>gi|255528215|ref|ZP_05395036.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Clostridium carboxidivorans P7]
 gi|255508088|gb|EET84507.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Clostridium carboxidivorans P7]
          Length = 183

 Score = 38.6 bits (88), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCS--RVDSKKLNR 879
           L  + G+G  TA+ I++    +  F+S+ED     R+  K L +
Sbjct: 132 LKTVSGIGDVTAQKIIDYREKNGSFNSIEDLKKVGRIGDKTLEK 175


>gi|161507341|ref|YP_001577295.1| competence protein ComEA [Lactobacillus helveticus DPC 4571]
 gi|160348330|gb|ABX27004.1| Competence protein ComEA [Lactobacillus helveticus DPC 4571]
          Length = 231

 Score = 38.6 bits (88), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
            L  + G+G   A  I+     + PF  +ED    +    +  +   SL
Sbjct: 180 GLQKLTGIGEKKAEQIIAYREQNGPFKKVEDL---MQVSGIGEKTFASL 225


>gi|111610192|gb|ABH11584.1| DNA uptake protein and related DNA-binding protein-like protein
           [Lactobacillus helveticus CNRZ32]
 gi|328468541|gb|EGF39543.1| competence protein ComEA [Lactobacillus helveticus MTCC 5463]
          Length = 231

 Score = 38.6 bits (88), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 838 SLAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
            L  + G+G   A  I+     + PF  +ED    +    +  +   SL
Sbjct: 180 GLQKLTGIGEKKAEQIIAYREQNGPFKKVEDL---MQVSGIGEKTFASL 225


>gi|153004169|ref|YP_001378494.1| phosphotransferase domain-containing protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027742|gb|ABS25510.1| PHP domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 589

 Score = 38.6 bits (88), Expect = 6.0,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
             H+++S  +G  SL  +     A     + +TD +   
Sbjct: 359 HCHTNWS--DGRASLEEMARAAEALGVEYLTVTDHSVTA 395


>gi|326801408|ref|YP_004319227.1| PHP domain protein [Sphingobacterium sp. 21]
 gi|326552172|gb|ADZ80557.1| PHP domain protein [Sphingobacterium sp. 21]
          Length = 560

 Score = 38.6 bits (88), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 3/37 (8%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAA-DQQPAIAITDT 49
           L  HS+YS  +G  SL  +        Q   + I D 
Sbjct: 323 LHNHSTYS--DGVHSLKEMALYCKDVLQLQYLGICDH 357


>gi|169333945|ref|ZP_02861138.1| hypothetical protein ANASTE_00331 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259510|gb|EDS73476.1| hypothetical protein ANASTE_00331 [Anaerofustis stercorihominis DSM
           17244]
          Length = 290

 Score = 38.6 bits (88), Expect = 6.1,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 62/185 (33%), Gaps = 37/185 (20%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT---NNLFSALEFSQKACAAGIQPI 70
           L +HS+ S  +G +S+++I+D    +    IAI D    +N+ +AL+    A    I  I
Sbjct: 5   LHIHSNAS-SDGEVSVSDIIDMSIKEDLKYIAIADHESIDNVQNALD---YAKDKDIAVI 60

Query: 71  IGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLDQGKQSVR 130
              ++ +  +  L                       E        +++++   +     +
Sbjct: 61  PAAEIFVSHKGKLLHMLGYGIDIKDA------ALNEE--------IAKIWKGRKEGVKKQ 106

Query: 131 ICL----------SWLQEIGTEGLIMLTGGSSGPI------DRAFFFNSSQVAEKRLLTF 174
           I L            + +  T  + +L+      +      D       +   +  +   
Sbjct: 107 IDLIRSKGLKIEEKEVFDYATGDIPLLSAYIHAILIEEENRDHRLVHGLTNDIDSIITLS 166

Query: 175 KKLFG 179
           ++ FG
Sbjct: 167 REAFG 171


>gi|81167689|sp|Q6DG22|ADA_DANRE RecName: Full=Adenosine deaminase; AltName: Full=Adenosine
          aminohydrolase
          Length = 359

 Score = 38.6 bits (88), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 9/42 (21%)

Query: 5  LEKSPSF----VHLQVHSSYSLLEGALSLNNILDKIAADQQP 42
          +   P+F    V L VH     L+GA+ L  +LD        
Sbjct: 1  MNGKPAFDKPKVELHVH-----LDGAIRLKTVLDVAKRRGIS 37


>gi|320102379|ref|YP_004177970.1| PHP domain-containing protein [Isosphaera pallida ATCC 43644]
 gi|319749661|gb|ADV61421.1| PHP domain protein [Isosphaera pallida ATCC 43644]
          Length = 216

 Score = 38.6 bits (88), Expect = 6.2,   Method: Composition-based stats.
 Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 6/40 (15%)

Query: 13 HLQV--HSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          H     HS     + A++   ++D+       A+ +T+ +
Sbjct: 6  HFHTTLHSP----DSAMTPEAMIDRAVELGLDALIVTEHD 41


>gi|313608726|gb|EFR84551.1| ComE operon protein 1 [Listeria monocytogenes FSL F2-208]
          Length = 155

 Score = 38.6 bits (88), Expect = 6.2,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  + G+G + A  I+E    +  F ++ED     +   +  + +E L
Sbjct: 104 LQQVPGIGESKATAIIEHREKEGLFQTIEDLK---NVSGIGEKTVEKL 148


>gi|291533404|emb|CBL06517.1| aspartyl-tRNA synthetase [Megamonas hypermegale ART12/1]
          Length = 600

 Score = 38.6 bits (88), Expect = 6.2,   Method: Composition-based stats.
 Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 5/54 (9%)

Query: 978  MGIKGYEESVATIRGNNIRLAAMVVSKQQKKTRKGSRIGWVTFSEPAKEYEANF 1031
                   E  AT  G  + L   V  ++         + ++   + +   +  F
Sbjct: 8    KRTHHCGELRATNEGQEVVLCGWVSHRRDHG-----GLIFIDLRDRSGLVQLVF 56


>gi|217964370|ref|YP_002350048.1| ComE operon protein 1 [Listeria monocytogenes HCC23]
 gi|217333640|gb|ACK39434.1| ComE operon protein 1 [Listeria monocytogenes HCC23]
 gi|307571065|emb|CAR84244.1| DNA-binding protein, ComEA family [Listeria monocytogenes L99]
          Length = 200

 Score = 38.6 bits (88), Expect = 6.2,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  + G+G + A  I+E    +  F ++ED     +   +  + +E L
Sbjct: 149 LQQVPGIGESKATAIIEHREKEGLFQTIEDLK---NVSGIGEKTVEKL 193


>gi|119509847|ref|ZP_01628990.1| hypothetical protein N9414_11599 [Nodularia spumigena CCY9414]
 gi|119465456|gb|EAW46350.1| hypothetical protein N9414_11599 [Nodularia spumigena CCY9414]
          Length = 541

 Score = 38.6 bits (88), Expect = 6.3,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 844 GVGTTTARHIMEASADKPFDSLEDFCS 870
           G+G   A+ I+ A   + F SL D   
Sbjct: 497 GIGEQLAQKIIIARQQQKFTSLADLTR 523


>gi|308321883|gb|ADO28079.1| adenosine deaminase [Ictalurus furcatus]
          Length = 236

 Score = 38.6 bits (88), Expect = 6.3,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 5/31 (16%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQP 42
          V L VH     L+GA+ +  ILD        
Sbjct: 18 VELHVH-----LDGAIRIETILDVAKRRGIK 43


>gi|307594937|ref|YP_003901254.1| PHP domain-containing protein [Vulcanisaeta distributa DSM 14429]
 gi|307550138|gb|ADN50203.1| PHP domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 228

 Score = 38.6 bits (88), Expect = 6.3,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 8/81 (9%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS---ALEFSQK---ACAAGI 67
          L  H+ YS  +G  +   ++          ++ITD +       AL+F +          
Sbjct: 5  LHTHTIYS--DGKGTPEEVIINALNKGIGILSITDHDTFKGSLKALDFIKSNDPFRKNDF 62

Query: 68 QPIIGCQLDIDMQDNLKMTNQ 88
            IIG ++     D L +  +
Sbjct: 63 IFIIGNEVRTIDGDVLVLCRE 83


>gi|292654268|ref|YP_003534165.1| PHP domain-containing protein [Haloferax volcanii DS2]
 gi|291370280|gb|ADE02507.1| PHP domain protein [Haloferax volcanii DS2]
          Length = 264

 Score = 38.6 bits (88), Expect = 6.3,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 5  LEKSPSFVHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          +++SP    L +H++ S  +G L+++ + D   A     +A+TD +
Sbjct: 1  MDESPPVADLHLHTTAS--DGRLTIDALPDAARAGGVDVVAVTDHD 44


>gi|119476864|ref|ZP_01617145.1| hypothetical protein GP2143_09937 [marine gamma proteobacterium
           HTCC2143]
 gi|119449671|gb|EAW30908.1| hypothetical protein GP2143_09937 [marine gamma proteobacterium
           HTCC2143]
          Length = 425

 Score = 38.6 bits (88), Expect = 6.3,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 35/85 (41%)

Query: 15  QVHSSYSLLEGAL--SLNNILDKIAADQQPAIAIT---------------DTNNLFSALE 57
             HSS+S  +G +   +   +++   D   AIAIT               D N       
Sbjct: 76  HTHSSFS--DGHVWPRIR--VEEALRDGLDAIAITEHLEWQPHMADLPHPDRN------R 125

Query: 58  FSQKACAAG------IQPIIGCQLD 76
             Q A  A       I  I G ++ 
Sbjct: 126 AYQIAREANGDNPLMI--IAGSEIT 148


>gi|329770387|ref|ZP_08261769.1| hypothetical protein HMPREF0433_01533 [Gemella sanguinis M325]
 gi|328836510|gb|EGF86170.1| hypothetical protein HMPREF0433_01533 [Gemella sanguinis M325]
          Length = 214

 Score = 38.6 bits (88), Expect = 6.4,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLE 883
           L  I G+G T A  I+E    +  F S ED       K + +   E
Sbjct: 164 LMKISGIGKTKAEAIIEYREKNGDFKSKEDI---TKVKGIGKSTFE 206


>gi|94499169|ref|ZP_01305707.1| DNA uptake protein and related DNA-binding protein [Oceanobacter
           sp. RED65]
 gi|94428801|gb|EAT13773.1| DNA uptake protein and related DNA-binding protein [Oceanobacter
           sp. RED65]
          Length = 104

 Score = 38.2 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDF 868
           L  +  +G   A+ I++    + PF  LED 
Sbjct: 52  LTQLDNIGPNKAQAIIDYRESNGPFKDLEDL 82


>gi|86740498|ref|YP_480898.1| phosphoesterase PHP-like protein [Frankia sp. CcI3]
 gi|86567360|gb|ABD11169.1| Phosphoesterase PHP-like [Frankia sp. CcI3]
          Length = 277

 Score = 38.2 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA 55
          L  ++S S   G+L  + ++ +        +AITD + +   
Sbjct: 4  LHAYTSES--GGSLMPHELVAQAVVAGVKVLAITDRDTVAGI 43


>gi|307729237|ref|YP_003906461.1| PHP domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307583772|gb|ADN57170.1| PHP domain protein [Burkholderia sp. CCGE1003]
          Length = 277

 Score = 38.2 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
           L  HS  ++ +G  +  ++  +  A      A+TD + L    E  Q A A G+  + G 
Sbjct: 6   LHCHS--TVSDGQFAPADVARRAHAGGVTLWALTDHDELGGQQEARQAAEALGMGYLSGV 63

Query: 74  QLDIDMQDNLKMTNQGKTPFPTVPSIVL--LVSTAEG 108
           +  +      +  +          S+++  L  T  G
Sbjct: 64  ETSVTWA--ARTVHIVGLGIDPTSSVLIDGLARTRNG 98


>gi|57640262|ref|YP_182740.1| hypothetical protein TK0327 [Thermococcus kodakarensis KOD1]
 gi|57158586|dbj|BAD84516.1| phosphohydrolase, PHP family [Thermococcus kodakarensis KOD1]
          Length = 218

 Score = 38.2 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+ YS  +G  S+ + +          + ITD 
Sbjct: 9  HTHTVYS--DGIGSIADNIASAEEKGLKLLGITDH 41


>gi|187935193|ref|YP_001884793.1| DNA-binding protein, ComEA family [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723346|gb|ACD24567.1| DNA-binding protein, ComEA family [Clostridium botulinum B str.
           Eklund 17B]
          Length = 206

 Score = 38.2 bits (87), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASAD-KPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  + G+G   A+ I+E   +   F+S+ED    +D   +  +  E L
Sbjct: 156 LKNLNGIGEAKAKRIIEYRENIGAFNSIED-IKNID--GIGEKSFEKL 200


>gi|226307622|ref|YP_002767582.1| hypothetical protein RER_41350 [Rhodococcus erythropolis PR4]
 gi|226186739|dbj|BAH34843.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 284

 Score = 38.2 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 15/91 (16%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA--AGIQPII 71
           L  HS+ S  +G  +   ++   A      +AITD +       +++ A A  AG+  + 
Sbjct: 5   LHTHSNAS--DGTDTPAALMRAAADAGLDVVAITDHDTTSG---WAEAAHALPAGVSLVR 59

Query: 72  GCQLDIDMQDNLKMTNQGKTPFPTVPSIVLL 102
           G ++  +         +G+  +P    ++  
Sbjct: 60  GMEMSCE--------GRGERGWPVAVHLLAY 82


>gi|15678578|ref|NP_275693.1| DNA-dependent DNA polymerase family X protein [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2621626|gb|AAB85056.1| DNA-dependent DNA polymerase family X [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 550

 Score = 38.2 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 14/88 (15%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA-----LEFS-QKACA-AG 66
           L +HS +S  +G  S+  + +  +   +  IAITD      A      +   + A     
Sbjct: 338 LHMHSLFS--DGIDSMEQMAEYASVLGREYIAITDH-----ARYIDDPDAYFRAAERIEE 390

Query: 67  IQPIIGCQLDIDMQDNLKMTNQGKTPFP 94
           I  + G ++ I    NL++ +     F 
Sbjct: 391 IDVLAGVEVSILHDGNLEVPDGALKNFD 418


>gi|262191633|ref|ZP_06049811.1| PHP family hydrolase [Vibrio cholerae CT 5369-93]
 gi|262032475|gb|EEY51035.1| PHP family hydrolase [Vibrio cholerae CT 5369-93]
          Length = 290

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSA--LEFSQKACAAGIQPII 71
          L  H++ S  +G  +   ++D+  + +   +AITD + + +              +Q + 
Sbjct: 5  LHSHTTAS--DGRFTYQQLIDRAVSFEIDVLAITDHDTVAALADARAYIAQQLYPLQLVN 62

Query: 72 GCQLD 76
          G ++ 
Sbjct: 63 GIEIS 67


>gi|325132997|gb|EGC55672.1| competence protein comEA [Neisseria meningitidis M6190]
          Length = 99

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L
Sbjct: 31  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKL 75


>gi|325128957|gb|EGC51810.1| comE1 [Neisseria meningitidis N1568]
          Length = 82

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L
Sbjct: 31  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKL 75


>gi|316984292|gb|EFV63266.1| comE1 [Neisseria meningitidis H44/76]
 gi|325135003|gb|EGC57632.1| competence protein comEA [Neisseria meningitidis M13399]
 gi|325141030|gb|EGC63535.1| competence protein comEA [Neisseria meningitidis CU385]
 gi|325141050|gb|EGC63554.1| DNA transport competence protein [Neisseria meningitidis CU385]
 gi|325197358|gb|ADY92814.1| ComE1 [Neisseria meningitidis G2136]
 gi|325199499|gb|ADY94954.1| competence protein comEA [Neisseria meningitidis H44/76]
          Length = 99

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L
Sbjct: 31  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKL 75


>gi|313667706|ref|YP_004047990.1| DNA transport competence protein [Neisseria lactamica ST-640]
 gi|313005168|emb|CBN86601.1| putative DNA transport competence protein [Neisseria lactamica
           020-06]
          Length = 99

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L
Sbjct: 31  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKL 75


>gi|308388515|gb|ADO30835.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha710]
 gi|308389779|gb|ADO32099.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha710]
          Length = 148

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L
Sbjct: 80  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKL 124


>gi|308388278|gb|ADO30598.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha710]
 gi|325136880|gb|EGC59477.1| competence protein ComEA helix-hairpin-helix repeat protein
           [Neisseria meningitidis M0579]
 gi|325201244|gb|ADY96698.1| ComE1 [Neisseria meningitidis M01-240149]
 gi|325202875|gb|ADY98329.1| ComE1 [Neisseria meningitidis M01-240149]
 gi|325207103|gb|ADZ02555.1| competence protein comEA [Neisseria meningitidis NZ-05/33]
 gi|325208869|gb|ADZ04321.1| competence protein comEA [Neisseria meningitidis NZ-05/33]
          Length = 99

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L
Sbjct: 31  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKL 75


>gi|296315134|ref|ZP_06865075.1| competence protein comEA [Neisseria polysaccharea ATCC 43768]
 gi|296315363|ref|ZP_06865304.1| competence protein comEA [Neisseria polysaccharea ATCC 43768]
 gi|296837676|gb|EFH21614.1| competence protein comEA [Neisseria polysaccharea ATCC 43768]
 gi|296837938|gb|EFH21876.1| competence protein comEA [Neisseria polysaccharea ATCC 43768]
          Length = 99

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L
Sbjct: 31  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKL 75


>gi|261400911|ref|ZP_05987036.1| DNA topoisomerase [Neisseria lactamica ATCC 23970]
 gi|269209280|gb|EEZ75735.1| DNA topoisomerase [Neisseria lactamica ATCC 23970]
          Length = 80

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L
Sbjct: 12  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKL 56


>gi|261400011|ref|ZP_05986136.1| DNA topoisomerase [Neisseria lactamica ATCC 23970]
 gi|269215027|ref|ZP_05987596.2| DNA topoisomerase [Neisseria lactamica ATCC 23970]
 gi|269215280|ref|ZP_05988050.2| DNA topoisomerase [Neisseria lactamica ATCC 23970]
 gi|269207910|gb|EEZ74365.1| DNA topoisomerase [Neisseria lactamica ATCC 23970]
 gi|269208438|gb|EEZ74893.1| DNA topoisomerase [Neisseria lactamica ATCC 23970]
 gi|269210227|gb|EEZ76682.1| DNA topoisomerase [Neisseria lactamica ATCC 23970]
          Length = 99

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L
Sbjct: 31  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKL 75


>gi|261393343|emb|CAX50979.1| DNA-binding competence protein ComE4 [Neisseria meningitidis 8013]
          Length = 154

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L
Sbjct: 86  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKL 130


>gi|254671769|emb|CBA09614.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha153]
          Length = 148

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L
Sbjct: 80  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKL 124


>gi|254671711|emb|CBA09499.1| putative DNA transport competence protein [Neisseria meningitidis
           alpha153]
 gi|325139338|gb|EGC61879.1| competence protein comEA [Neisseria meningitidis CU385]
          Length = 99

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L
Sbjct: 31  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKL 75


>gi|160936137|ref|ZP_02083510.1| hypothetical protein CLOBOL_01033 [Clostridium bolteae ATCC
          BAA-613]
 gi|158440947|gb|EDP18671.1| hypothetical protein CLOBOL_01033 [Clostridium bolteae ATCC
          BAA-613]
          Length = 236

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 14 LQVHSSYSLL---EGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPI 70
          L +HS  S     +  ++  NI    A      +A+TD N   +   F   A   G+  +
Sbjct: 8  LHIHSCLSPCGDDD--MTPANIAGMAALKGLDVVALTDHNTCRNCPAFMAAAAEYGVLAV 65

Query: 71 IGCQLD 76
           G +++
Sbjct: 66 PGMEIN 71


>gi|121633939|ref|YP_974184.1| putative DNA transport competence protein [Neisseria meningitidis
           FAM18]
 gi|120865645|emb|CAM09365.1| putative DNA transport competence protein [Neisseria meningitidis
           FAM18]
          Length = 154

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L
Sbjct: 86  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKL 130


>gi|15676221|ref|NP_273353.1| comEA-related protein [Neisseria meningitidis MC58]
 gi|7225524|gb|AAF40750.1| comEA-related protein [Neisseria meningitidis MC58]
          Length = 148

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L
Sbjct: 80  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKL 124


>gi|15677506|ref|NP_274662.1| comE operon protein 1-related protein [Neisseria meningitidis MC58]
 gi|7226909|gb|AAF42006.1| comE operon protein 1-related protein [Neisseria meningitidis MC58]
          Length = 205

 Score = 38.2 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L
Sbjct: 137 LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKL 181


>gi|262203261|ref|YP_003274469.1| PHP domain-containing protein [Gordonia bronchialis DSM 43247]
 gi|262086608|gb|ACY22576.1| PHP domain protein [Gordonia bronchialis DSM 43247]
          Length = 349

 Score = 38.2 bits (87), Expect = 7.2,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  H+ +S  +G   L  +    AA  Q  +AITD 
Sbjct: 112 LHAHTDWS--DGGAPLWEMASAAAAFGQDWLAITDH 145


>gi|320546389|ref|ZP_08040704.1| competence protein CelA [Streptococcus equinus ATCC 9812]
 gi|320448774|gb|EFW89502.1| competence protein CelA [Streptococcus equinus ATCC 9812]
          Length = 226

 Score = 38.2 bits (87), Expect = 7.2,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  I G+G   A+ I++    +  F S++D     +   +  + LE L
Sbjct: 175 LQTISGIGAKRAQDIIDYRDNNGGFSSVDDLK---NVSGIGEKTLEKL 219


>gi|160881032|ref|YP_001560000.1| HisJ family histidinol phosphate phosphatase [Clostridium
          phytofermentans ISDg]
 gi|160429698|gb|ABX43261.1| histidinol phosphate phosphatase HisJ family [Clostridium
          phytofermentans ISDg]
          Length = 274

 Score = 38.2 bits (87), Expect = 7.3,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            H+++S  +   S  +++++  +       ITD 
Sbjct: 7  HTHTNFS-TDSDYSPESMIERAISLGLSTYCITDH 40


>gi|27382391|ref|NP_773920.1| hypothetical protein bll7280 [Bradyrhizobium japonicum USDA 110]
 gi|27355562|dbj|BAC52545.1| bll7280 [Bradyrhizobium japonicum USDA 110]
          Length = 786

 Score = 38.2 bits (87), Expect = 7.4,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGY 896
           LA + GVG+  A+ I+    A+ PF S +      D  +L  +  E    AG L   G 
Sbjct: 514 LARVSGVGSGLAQSIVAHRDANGPFKSRKSLK---DVPRLGPKAFEQ--CAGFLRILGG 567


>gi|282856049|ref|ZP_06265335.1| histidinol phosphate phosphatase HisJ family [Pyramidobacter
          piscolens W5455]
 gi|282586070|gb|EFB91352.1| histidinol phosphate phosphatase HisJ family [Pyramidobacter
          piscolens W5455]
          Length = 270

 Score = 38.2 bits (87), Expect = 7.5,   Method: Composition-based stats.
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           +H+  S  +   ++ + LD+        + ITD 
Sbjct: 6  HIHTEAS-SDSKTTIEDQLDRAVKLGMKYVCITDH 39


>gi|254431448|ref|ZP_05045151.1| PHP domain protein [Cyanobium sp. PCC 7001]
 gi|197625901|gb|EDY38460.1| PHP domain protein [Cyanobium sp. PCC 7001]
          Length = 223

 Score = 38.2 bits (87), Expect = 7.5,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 9/57 (15%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFS-----ALEFSQKACAAG 66
            H+  S  +G+L+   +  +  A     +A+TD + L +     A+   + A A G
Sbjct: 32 HCHTICS--DGSLTPEGLAHQALAIGLDHLAVTDHHALQAHAPISAV--FEAASARG 84


>gi|148658551|ref|YP_001278756.1| phosphotransferase domain-containing protein [Roseiflexus sp. RS-1]
 gi|148570661|gb|ABQ92806.1| PHP C-terminal domain protein [Roseiflexus sp. RS-1]
          Length = 458

 Score = 38.2 bits (87), Expect = 7.5,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLF 53
           L  H+ +S  +G   +  +L+   A     +A+TD N + 
Sbjct: 155 LHAHTVHS--DGEWDIPALLEAARARHLDFVALTDHNTIA 192


>gi|251797757|ref|YP_003012488.1| PHP domain protein [Paenibacillus sp. JDR-2]
 gi|247545383|gb|ACT02402.1| PHP domain protein [Paenibacillus sp. JDR-2]
          Length = 286

 Score = 38.2 bits (87), Expect = 7.6,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 12/37 (32%)

Query: 46 ITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDN 82
          ITD + +    E        GI  + G +L       
Sbjct: 38 ITDHDTMAGVEEALAAGQKLGITVVPGVELSTIADGR 74


>gi|119475425|ref|ZP_01615778.1| 5,10-methylenetetrahydrofolate reductase [marine gamma
           proteobacterium HTCC2143]
 gi|119451628|gb|EAW32861.1| 5,10-methylenetetrahydrofolate reductase [marine gamma
           proteobacterium HTCC2143]
          Length = 276

 Score = 38.2 bits (87), Expect = 7.6,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 39/125 (31%), Gaps = 13/125 (10%)

Query: 64  AAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLVSTAEGYQRLIELVSRMYLLD 123
              ++  +  +L+    D   +T              ++   A G      + +  +L  
Sbjct: 20  KEKLKL-VSAELNALGPDFFSVTYGAGGSTRANTKDTVISMNAAG------ISTVPHL-S 71

Query: 124 QGKQSVRICLSWLQEIGTEGL--IMLTGGSSGPIDRAFFFNSSQVAEKRLLTFKKLFGDR 181
            G    ++ L  L+E    G+  I+      G +           AE+ +   +   GD 
Sbjct: 72  FGNDDEQVILDLLREYKAAGISRIV---ALRGDVPSGMGAQRLIYAEELVQFIRDHTGDH 128

Query: 182 LYVNL 186
             + +
Sbjct: 129 FQLEV 133


>gi|54026120|ref|YP_120362.1| putative RNA-binding protein [Nocardia farcinica IFM 10152]
 gi|54017628|dbj|BAD58998.1| putative RNA-binding protein [Nocardia farcinica IFM 10152]
          Length = 783

 Score = 38.2 bits (87), Expect = 7.6,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 839 LAAIKGVGTTTARHIMEAS-ADKPFDSLEDFCSRVDSKKLNRRVLE 883
           L+ + G+G+  A  I+     + PF S        D  +L  +  E
Sbjct: 502 LSRVSGIGSAVAESIVAHRDQNGPFRSRTALL---DVPRLGPKAFE 544


>gi|328951938|ref|YP_004369272.1| glycosyl transferase group 1 [Desulfobacca acetoxidans DSM 11109]
 gi|328452262|gb|AEB08091.1| glycosyl transferase group 1 [Desulfobacca acetoxidans DSM 11109]
          Length = 811

 Score = 38.2 bits (87), Expect = 7.6,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 18/61 (29%), Gaps = 22/61 (36%)

Query: 14 LQVHSSYSLLEGALSLNNILDK-----------------IAADQQPAIAITDTNNLFSAL 56
          L VHS YS        +  + +                         I ITD NN+   L
Sbjct: 5  LHVHSKYS-----TRPSQWVLQKLGCHECYTEPQQLYRIAKQRGMDWITITDHNNINGCL 59

Query: 57 E 57
          E
Sbjct: 60 E 60


>gi|218885973|ref|YP_002435294.1| RNA binding S1 domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756927|gb|ACL07826.1| RNA binding S1 domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 756

 Score = 38.2 bits (87), Expect = 7.7,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESLVFAGALDCFGYS 897
           LA + G+G   AR+I+   A + PF +  D        +L  +  E    AG L   G +
Sbjct: 538 LAHVSGIGPVLARNIVAHRAENGPFRNRRDLLK---VPRLGPKAFEQ--AAGFLRVRGDN 592


>gi|291544634|emb|CBL17743.1| Histidinol phosphatase and related hydrolases of the PHP family
          [Ruminococcus sp. 18P13]
          Length = 240

 Score = 38.2 bits (87), Expect = 7.7,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 11/42 (26%)

Query: 14 LQVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS     +YS      ++N +            A+TD  
Sbjct: 7  LHCHSIASTHAYS------TINELAQSAKEAGIRLFALTDHG 42


>gi|304389134|ref|ZP_07371175.1| competence protein comEA [Neisseria meningitidis ATCC 13091]
 gi|304336910|gb|EFM03103.1| competence protein comEA [Neisseria meningitidis ATCC 13091]
          Length = 128

 Score = 38.2 bits (87), Expect = 7.8,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIMEASA-DKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L A+ G+G   A+ I E  A +  F S++D       K +   VL  L
Sbjct: 80  LEALPGIGPAKAKAIAEYRAQNGAFKSVDDL---TKVKGIGPAVLAKL 124


>gi|220911392|ref|YP_002486701.1| hypothetical protein Achl_0614 [Arthrobacter chlorophenolicus A6]
 gi|219858270|gb|ACL38612.1| PHP domain protein [Arthrobacter chlorophenolicus A6]
          Length = 344

 Score = 38.2 bits (87), Expect = 7.8,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
           L  HS +S  +G   +  ++       +  +A+TD 
Sbjct: 103 LHSHSEWS--DGGSPIEVMVAAAEVLGREYLALTDH 136


>gi|118396485|ref|XP_001030582.1| hypothetical protein TTHERM_01068220 [Tetrahymena thermophila]
 gi|89284890|gb|EAR82919.1| hypothetical protein TTHERM_01068220 [Tetrahymena thermophila
           SB210]
          Length = 491

 Score = 38.2 bits (87), Expect = 7.9,   Method: Composition-based stats.
 Identities = 21/324 (6%), Positives = 75/324 (23%), Gaps = 24/324 (7%)

Query: 346 NVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFE 405
            +   M +   + + +  + +A                    Y    +    +  +    
Sbjct: 147 CMTDMMNYMSCYNMCSSKMNFADYMM----------CTMACTYNNDSSLTSYVNAANTCS 196

Query: 406 RFLNPDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDVGRAL 465
             L  + M  P F       ++  ++   Q K  +   +   +   +    +        
Sbjct: 197 NNLAMNSMFWPSFFTS----QQGSMLMMCQQKIANPCTSSSNSAMCMTDMMSYNACYNKC 252

Query: 466 QMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDR----LLEISQKLEGL 521
               +  D +   +    ++      I   +                  +  +  +    
Sbjct: 253 SSKININDYMTCTMACTSSNSSLQMYIQSSNMCINMFTMPQYPMFLNSSMSSMLSQCNQK 312

Query: 522 YRHASTHAAGIVIGDRPLSQLVPMYRDVRSDLPVTQFNMKWIEKAGLIKFDFLGLKTLTL 581
             +    A+   +    +   +  Y    S   +  +    ++         + + ++ +
Sbjct: 313 ISNPCQSASNQAMCMSDMMSYLACYNMCSSKTALNDYMTCTMQCTSTDSSLSMYITSMNM 372

Query: 582 LQKSLDFLAQRGVKVDLSLIPFDDHETYHLLT------TKGTLGIFQLESSGMRQALEGM 635
              +    A + +    S +   D                 ++ + Q  +  M      M
Sbjct: 373 CTMNTFMSAMQTMMNPPSFLGSQDSMMLKNCMQNISNPCASSMNMSQCSADIMSYMQCSM 432

Query: 636 QPDCIEDIIALVSLYRPGPIDNIV 659
                  I    +        + +
Sbjct: 433 ACGSKTSISDYKTCSMACTSTDQM 456


>gi|153005481|ref|YP_001379806.1| phosphotransferase domain-containing protein [Anaeromyxobacter
          sp. Fw109-5]
 gi|152029054|gb|ABS26822.1| PHP domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 266

 Score = 38.2 bits (87), Expect = 7.9,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 12 VHLQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
              VH+S S  +   S   ++++  A     + +TD + 
Sbjct: 4  AEYHVHTSASY-DSRASPAELVERALAAGLDVVFVTDHDT 42


>gi|290580890|ref|YP_003485282.1| putative competence protein [Streptococcus mutans NN2025]
 gi|254997789|dbj|BAH88390.1| putative competence protein [Streptococcus mutans NN2025]
          Length = 226

 Score = 38.2 bits (87), Expect = 8.0,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  I G+G   A+ I++   A+  F S++D     +   +  +  E L
Sbjct: 175 LQTISGIGEKKAQDILDYREANGGFKSVDDLK---NISGIGDKTFEKL 219


>gi|254425001|ref|ZP_05038719.1| hypothetical protein S7335_5164 [Synechococcus sp. PCC 7335]
 gi|196192490|gb|EDX87454.1| hypothetical protein S7335_5164 [Synechococcus sp. PCC 7335]
          Length = 204

 Score = 38.2 bits (87), Expect = 8.0,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 17 HSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA 64
          H+  S  +G L+ + ++++        IAITD +     ++   +A A
Sbjct: 2  HTYCS--DGKLAPSELMEQAVKIGLRGIAITDHHT----IKGYSQAKA 43


>gi|24379098|ref|NP_721053.1| putative competence protein [Streptococcus mutans UA159]
 gi|24376999|gb|AAN58359.1|AE014906_5 putative competence protein [Streptococcus mutans UA159]
          Length = 225

 Score = 38.2 bits (87), Expect = 8.0,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 839 LAAIKGVGTTTARHIME-ASADKPFDSLEDFCSRVDSKKLNRRVLESL 885
           L  I G+G   A+ I++   A+  F S++D     +   +  +  E L
Sbjct: 174 LQTISGIGEKKAQDILDYREANGGFKSVDDLK---NISGIGDKTFEKL 218


>gi|291002976|ref|ZP_06560949.1| hypothetical protein SeryN2_00440 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 329

 Score = 38.2 bits (87), Expect = 8.1,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             HS +S  +G   +  + +         + +TD 
Sbjct: 100 HTHSDWS--DGGSPIEEMAETARDLGHEWMVLTDH 132


>gi|261406039|ref|YP_003242280.1| stage IV sporulation protein A [Paenibacillus sp. Y412MC10]
 gi|329929798|ref|ZP_08283474.1| stage IV sporulation protein A [Paenibacillus sp. HGF5]
 gi|261282502|gb|ACX64473.1| stage IV sporulation protein A [Paenibacillus sp. Y412MC10]
 gi|328935776|gb|EGG32237.1| stage IV sporulation protein A [Paenibacillus sp. HGF5]
          Length = 492

 Score = 38.2 bits (87), Expect = 8.1,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 96/275 (34%), Gaps = 15/275 (5%)

Query: 132 CLSWLQEIGTEGLIMLTGGSSGPIDRAFFFNSSQVAEKR-LLTFKKLFGDRLYVNLQRHR 190
               +QE  T G+++ T GS   I R+    S   AE+R +   K++ G    V +   R
Sbjct: 137 TRKVIQEHSTLGVVVTTDGSIAEIPRS----SYVEAEERVIEELKEV-GKPFVVVINSTR 191

Query: 191 GYDRYRESQVVQLAYTHELPLVATNNSLFLSEE-----DYEAHDVLMAVAHSTVVSQKDR 245
                      +LA  +++P++  + +    ++         ++  +   +  + S    
Sbjct: 192 PRSEEALQLRNELAEKYDIPVMTLSAATMTDDDVTGVLREVLYEFPVHEVNVNLPSWVMV 251

Query: 246 PRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHAPILPRFIEKECDDIQK 305
                       + +     D+    +    +++   +    HA +    + +   +I  
Sbjct: 252 LNENHWLRSNYENSVRDTVKDIRRLRDVDRVVSQFMEYDFINHAGLSGMNMGQGVAEIDL 311

Query: 306 EEENELRNKAVA---GLEVRLAQGAIAKGYHAQDYRQRLDFELNVIARMKFSGYFLIVAD 362
              +EL ++ +    G+E+R     +         ++  D     +  +K +GY +    
Sbjct: 312 FAPDELYDRILMEVVGVEIRGKDHLLQLMQEFSHAKREYDRFAEALEMVKTTGYGIAAPS 371

Query: 363 FIQWAKKNNIPVGPGRGSGAGS-VTAYALTITDID 396
             + A      +  G   G     TA ++ +  +D
Sbjct: 372 LAEMALDEPELIRQGTRFGVRLKATAPSIHMIRVD 406


>gi|289434480|ref|YP_003464352.1| DNA polymerase family protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170724|emb|CBH27264.1| DNA polymerase family protein [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 570

 Score = 38.2 bits (87), Expect = 8.2,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|116872602|ref|YP_849383.1| hypothetical protein lwe1186 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741480|emb|CAK20604.1| DNA polymerase X family protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 570

 Score = 38.2 bits (87), Expect = 8.2,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|325261969|ref|ZP_08128707.1| putative PHP domain protein [Clostridium sp. D5]
 gi|324033423|gb|EGB94700.1| putative PHP domain protein [Clostridium sp. D5]
          Length = 271

 Score = 38.2 bits (87), Expect = 8.3,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-ACAAGIQPIIG 72
          L +H++ S  + +L    IL    A     ++ TD +    A +  +  A   GIQ I G
Sbjct: 7  LHIHTAVS--DCSLQTEAILAGAKAAGITHLSFTDHDTTADAQK-HKAMAREQGIQAIKG 63

Query: 73 CQLDIDMQDNLKMTNQGKTPFPTVPSI 99
           ++        K  +     + T   I
Sbjct: 64 IEMSAYDFKRNKKVHILGYKYQTNRQI 90


>gi|282600248|ref|ZP_06257526.1| putative hydrolase YcdX [Providencia rustigianii DSM 4541]
 gi|282566017|gb|EFB71552.1| putative hydrolase YcdX [Providencia rustigianii DSM 4541]
          Length = 248

 Score = 38.2 bits (87), Expect = 8.3,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 11/42 (26%)

Query: 14 LQVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  H+     ++S      +++    +  A      AITD  
Sbjct: 9  LHAHTIASTHAFS------TVDEYFAEATARGMKLFAITDHG 44


>gi|298246251|ref|ZP_06970057.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297553732|gb|EFH87597.1| PHP domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 287

 Score = 38.2 bits (87), Expect = 8.4,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAAD-QQPAIAITDTNNLFSALEF 58
           +HS+YS  +G+ ++  IL  +  +     IAITD + +  +L  
Sbjct: 53 HMHSTYS--DGSATIEQILQHVEHNTDLDVIAITDHDVIEGSLRA 95


>gi|189347227|ref|YP_001943756.1| PHP domain protein [Chlorobium limicola DSM 245]
 gi|189341374|gb|ACD90777.1| PHP domain protein [Chlorobium limicola DSM 245]
          Length = 286

 Score = 38.2 bits (87), Expect = 8.4,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGC 73
          L +H+  S  +G L+  +I+ + AA    AI+ITD +++    +    A   G++ I G 
Sbjct: 18 LHIHTKCS--DGILTPEDIVARAAASGLAAISITDHDSVEGIDKAKPLALEKGLELIPGA 75

Query: 74 QLD 76
          ++ 
Sbjct: 76 EMS 78


>gi|313887872|ref|ZP_07821551.1| comEA protein [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846038|gb|EFR33420.1| comEA protein [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 216

 Score = 38.2 bits (87), Expect = 8.4,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 839 LAAIKGVGTTTARHIMEASADKPFDSLED 867
           L  I GVG  TA+ I++  A+  F S+ED
Sbjct: 166 LTKIPGVGEKTAQKIIDYRANNSFSSIED 194


>gi|289773540|ref|ZP_06532918.1| conserved hypothetical protein [Streptomyces lividans TK24]
 gi|289703739|gb|EFD71168.1| conserved hypothetical protein [Streptomyces lividans TK24]
          Length = 358

 Score = 37.8 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +HS +S  +G   +  +    AA      A+TD 
Sbjct: 117 HLHSDWS--DGGSPIEEMGRTAAALGHEWAALTDH 149


>gi|256789652|ref|ZP_05528083.1| hypothetical protein SlivT_34653 [Streptomyces lividans TK24]
          Length = 372

 Score = 37.8 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +HS +S  +G   +  +    AA      A+TD 
Sbjct: 131 HLHSDWS--DGGSPIEEMGRTAAALGHEWAALTDH 163


>gi|302539938|ref|ZP_07292280.1| cell division topological specificity factor MinE [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302457556|gb|EFL20649.1| cell division topological specificity factor MinE [Streptomyces
           himastatinicus ATCC 53653]
          Length = 581

 Score = 37.8 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 27/101 (26%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFS-QKACAAGI----- 67
           L  H+   L +G   L N++           A+TD      A +   Q+     I     
Sbjct: 342 LHTHTD--LTDGLEPLENMIATAERRGYAYYAVTDH-----APKLYMQQMTKEKILAQRE 394

Query: 68  --------------QPIIGCQLDIDMQDNLKMTNQGKTPFP 94
                         + + G +L+ID    +   +     F 
Sbjct: 395 RLRAMDRGRGRRDMRLLHGVELNIDADGEVDWPDDFLEGFD 435


>gi|148656671|ref|YP_001276876.1| phosphotransferase domain-containing protein [Roseiflexus sp.
          RS-1]
 gi|148568781|gb|ABQ90926.1| PHP C-terminal domain protein [Roseiflexus sp. RS-1]
          Length = 352

 Score = 37.8 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L +H+ +S  +G+ S+ ++           I ITD +
Sbjct: 8  LHMHTRFS--DGSGSVEDLARAACDAGLRWIIITDHD 42


>gi|21219312|ref|NP_625091.1| hypothetical protein SCO0789 [Streptomyces coelicolor A3(2)]
 gi|11071281|emb|CAC14354.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
          Length = 372

 Score = 37.8 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
            +HS +S  +G   +  +    AA      A+TD 
Sbjct: 131 HLHSDWS--DGGSPIEEMGRTAAALGHEWAALTDH 163


>gi|253681960|ref|ZP_04862757.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
 gi|253561672|gb|EES91124.1| conserved hypothetical protein [Clostridium botulinum D str. 1873]
          Length = 415

 Score = 37.8 bits (86), Expect = 8.6,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 10/37 (27%), Gaps = 2/37 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNN 51
             H+S+S   G                  + ITD   
Sbjct: 110 HAHTSFSTGRGT--PIEAFTYAKKKGIDFLIITDHCG 144


>gi|134100034|ref|YP_001105695.1| hypothetical protein SACE_3496 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912657|emb|CAM02770.1| putative histidinol phosphatase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 323

 Score = 37.8 bits (86), Expect = 8.6,   Method: Composition-based stats.
 Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 2/35 (5%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDT 49
             HS +S  +G   +  + +         + +TD 
Sbjct: 94  HTHSDWS--DGGSPIEEMAETARDLGHEWMVLTDH 126


>gi|328778685|ref|XP_003249535.1| PREDICTED: zinc finger protein 845-like [Apis mellifera]
          Length = 567

 Score = 37.8 bits (86), Expect = 8.7,   Method: Composition-based stats.
 Identities = 28/328 (8%), Positives = 77/328 (23%), Gaps = 5/328 (1%)

Query: 218 LFLSEEDYEAHDVLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSD-LPEALENTVE 276
            +  +  +     +  +    +   ++  +       K R  +  + S    +       
Sbjct: 133 FYHYKRYHCKDGRVSCLQCGKLFENQEGLKKHICVDGKTRPHVCEVCSKGFCDGYTLKRH 192

Query: 277 IARRCSFILQVHAPILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQD 336
           I                 F +K   +      + +   +                  A +
Sbjct: 193 IVTHLPEKPYKCPECSKSFTQKSRLNKHIAGHSIIFENSQTIWRCICCGETFGSCESADE 252

Query: 337 YRQRLDFELNVIARMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDID 396
           + ++ + ++++I  M+    +        +A  +++             +          
Sbjct: 253 HCKKHEDKISLIEEMQVLKLYHCEFCSSHFADMDHLKSHRESHVIEKPYSCNHCNSI-FK 311

Query: 397 PLRFSLLFERFLNPDRMSMPDFDIDFCQ-DRRDEVIRYVQNKYGHERVAQIITFGSLQAK 455
               ++L  +        +  F  + C  D ++  + Y   +  H+ V +    G    K
Sbjct: 312 SFAEAVLHWKEHPRIFKVLVVFLCEICDRDVKELSLLYKHKQKRHQPVPRKSEKGK--EK 369

Query: 456 AALRDVGRALQMPYSQVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEIS 515
                 G          +         P           +S     R        +  I 
Sbjct: 370 FICELCGSIFISIEDFQEHGKYRCSKFPCDICGSLLPTANSLNAHKRRHSGLRPYVCNIC 429

Query: 516 QKLEGLYRHASTHAAGIVIGDRPLSQLV 543
            K      H  TH    +       +  
Sbjct: 430 GKSYTQSSHMWTHKRFHMGVKPYACEYC 457


>gi|315302786|ref|ZP_07873553.1| PHP domain protein [Listeria ivanovii FSL F6-596]
 gi|313628843|gb|EFR97209.1| PHP domain protein [Listeria ivanovii FSL F6-596]
          Length = 570

 Score = 37.8 bits (86), Expect = 8.7,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|224499097|ref|ZP_03667446.1| hypothetical protein LmonF1_05110 [Listeria monocytogenes Finland
           1988]
          Length = 570

 Score = 37.8 bits (86), Expect = 8.7,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|16803271|ref|NP_464756.1| hypothetical protein lmo1231 [Listeria monocytogenes EGD-e]
 gi|16410647|emb|CAC99309.1| lmo1231 [Listeria monocytogenes EGD-e]
          Length = 570

 Score = 37.8 bits (86), Expect = 8.7,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|47097373|ref|ZP_00234925.1| PHP domain protein [Listeria monocytogenes str. 1/2a F6854]
 gi|254830015|ref|ZP_05234670.1| hypothetical protein Lmon1_01600 [Listeria monocytogenes 10403S]
 gi|254898608|ref|ZP_05258532.1| hypothetical protein LmonJ_02295 [Listeria monocytogenes J0161]
 gi|254911903|ref|ZP_05261915.1| PHP domain-containing protein [Listeria monocytogenes J2818]
 gi|254936228|ref|ZP_05267925.1| PHP domain-containing protein [Listeria monocytogenes F6900]
 gi|284801551|ref|YP_003413416.1| hypothetical protein LM5578_1304 [Listeria monocytogenes 08-5578]
 gi|284994693|ref|YP_003416461.1| hypothetical protein LM5923_1257 [Listeria monocytogenes 08-5923]
 gi|47014245|gb|EAL05226.1| PHP domain protein [Listeria monocytogenes str. 1/2a F6854]
 gi|258608818|gb|EEW21426.1| PHP domain-containing protein [Listeria monocytogenes F6900]
 gi|284057113|gb|ADB68054.1| hypothetical protein LM5578_1304 [Listeria monocytogenes 08-5578]
 gi|284060160|gb|ADB71099.1| hypothetical protein LM5923_1257 [Listeria monocytogenes 08-5923]
 gi|293589861|gb|EFF98195.1| PHP domain-containing protein [Listeria monocytogenes J2818]
          Length = 570

 Score = 37.8 bits (86), Expect = 8.7,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|254828591|ref|ZP_05233278.1| PHP domain-containing protein [Listeria monocytogenes FSL N3-165]
 gi|258600989|gb|EEW14314.1| PHP domain-containing protein [Listeria monocytogenes FSL N3-165]
          Length = 570

 Score = 37.8 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|149190889|ref|ZP_01869152.1| putative metal-dependent phosphoesterase YciV [Vibrio shilonii AK1]
 gi|148835244|gb|EDL52218.1| putative metal-dependent phosphoesterase YciV [Vibrio shilonii AK1]
          Length = 297

 Score = 37.8 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 86/263 (32%), Gaps = 61/263 (23%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKA----------- 62
           L  H++ S  +G LS+  +LD+        +AITD + L +  E  +             
Sbjct: 5   LHSHTTAS--DGRLSVAELLDRAIGFDVKVLAITDHDTLDAIPEALELIEQQSLPIELVN 62

Query: 63  --------CAAGIQPIIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVL--LVS-TAEGYQR 111
                       I  I+G  + +D  + L +    +        ++   L   T EG   
Sbjct: 63  GIEISTVWQNKDIH-IVGLGVSLDSPELLALIEAQQARRVERSELIAHRLEKATREGVLE 121

Query: 112 LIEL------VSRMY----LLDQGKQSV--RICLSWLQEIGT-----------EGLIMLT 148
            ++L      ++R +    L+D G      ++   ++    T           E +  + 
Sbjct: 122 EVKLIAGDAPITRAHFAKWLVDNGYAKTMQQVFKKYMTRNNTGYVPPNWCSMQEAVAAI- 180

Query: 149 GGSSGPIDRAFFFNSSQVAEKRLLTFKKLF----GDRLYVNL-QRHRGYDRYRESQVVQL 203
             S+G +         Q+  K L      F    GD   + + Q  +     R   +   
Sbjct: 181 -HSAGGVAVLAHPGRYQLTAKWLKRLLAAFCEANGDA--MEVAQPQQSLQERRN--LADY 235

Query: 204 AYTHELPLVATNNSLFLSEEDYE 226
           A  + L  +A+  S F     + 
Sbjct: 236 AIQYNL--LASQGSDFHYPSPWM 256


>gi|15790006|ref|NP_279830.1| hypothetical protein VNG0865C [Halobacterium sp. NRC-1]
 gi|10580430|gb|AAG19310.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
          Length = 206

 Score = 37.8 bits (86), Expect = 8.8,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 30/70 (42%)

Query: 32  ILDKIAADQQPAIAITDTNNLFSALEFSQKACAAGIQPIIGCQLDIDMQDNLKMTNQGKT 91
           +L++  A    A+A+TD + + ++L  ++ A    +  I G ++       L +  +   
Sbjct: 2   LLEQAQAVGLDALAVTDHDEIDASLRAAELAADYDLVGIPGMEVTSADGHVLAIGVERAV 61

Query: 92  PFPTVPSIVL 101
           P     +  L
Sbjct: 62  PAGLPFAETL 71


>gi|313633657|gb|EFS00414.1| PHP domain protein [Listeria seeligeri FSL N1-067]
          Length = 570

 Score = 37.8 bits (86), Expect = 9.0,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|255025808|ref|ZP_05297794.1| hypothetical protein LmonocytFSL_04760 [Listeria monocytogenes FSL
           J2-003]
          Length = 555

 Score = 37.8 bits (86), Expect = 9.0,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|269797928|ref|YP_003311828.1| PHP domain protein [Veillonella parvula DSM 2008]
 gi|269094557|gb|ACZ24548.1| PHP domain protein [Veillonella parvula DSM 2008]
          Length = 275

 Score = 37.8 bits (86), Expect = 9.0,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 49/136 (36%), Gaps = 31/136 (22%)

Query: 15  QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQKACA-----AGIQP 69
            +HS +S  +G  +  ++L          +A+TD + +   L+  + A         I+ 
Sbjct: 6   HMHSIFS--DGVETPKDLLQHAIDCNVSMMALTDHDEIDG-LQALRVAQKELDPNESIKI 62

Query: 70  IIGCQLDIDMQDNLKMTNQGKTPFPTVPSIVLLV--STAEGYQRLIELVSRMYLLDQGKQ 127
           + GC+   D +D                 I+           + LI+ ++      +GK+
Sbjct: 63  VNGCEFSADYKDKSI-------------HILGYCFDENN---KDLIDFIT----FFKGKR 102

Query: 128 SVRICLSWLQEIGTEG 143
             RI    ++    EG
Sbjct: 103 EERID-EIIRRCNNEG 117


>gi|313638203|gb|EFS03451.1| PHP domain protein [Listeria seeligeri FSL S4-171]
          Length = 570

 Score = 37.8 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|292669223|ref|ZP_06602649.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292649064|gb|EFF67036.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 250

 Score = 37.8 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 13/84 (15%)

Query: 15 QVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN-NLFSALE---FSQ------KACA 64
            H+  S+     ++  +           + I+D    +        F         A  
Sbjct: 8  HTHTIASM-HAYSTIREMAAAAKEKGLALLGISDHAPAMPGTFHELYFHNFKVIRPAA-- 64

Query: 65 AGIQPIIGCQLDIDMQDNLKMTNQ 88
           GI  I+G +L++          +
Sbjct: 65 YGIDLIMGAELNVLDHTGAVDLPE 88


>gi|225571518|ref|ZP_03780514.1| hypothetical protein CLOHYLEM_07616 [Clostridium hylemonae DSM
           15053]
 gi|225159595|gb|EEG72214.1| hypothetical protein CLOHYLEM_07616 [Clostridium hylemonae DSM
           15053]
          Length = 243

 Score = 37.8 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 21/113 (18%)

Query: 20  YSLLEGALSLNNILDKIAADQQPAIAITDTNNLFSALEFSQK-ACAAGIQPII-GCQLDI 77
           YS  +  L+L  ++++        I ITD +++    +++++ A      PI  G +   
Sbjct: 37  YS-KDSILTLREMVERGREKGLGGICITDHDSM-GIRDYAREYAAKTAF-PIFTGIEYYS 93

Query: 78  DMQD----NLKMTNQGKTPFPTVPSI------VLLVS-----TAEGY-QRLIE 114
              D     ++   + + P      +      V   +        G  + L++
Sbjct: 94  LEGDIVAFGIREYPKERVPAQEFIDLVKAQGGVCYAAHPFRNNNRGLEENLLK 146


>gi|328475249|gb|EGF46030.1| hypothetical protein LM220_17512 [Listeria monocytogenes 220]
          Length = 552

 Score = 37.8 bits (86), Expect = 9.2,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 321 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 355


>gi|226223831|ref|YP_002757938.1| DNA polymerase beta [Listeria monocytogenes Clip81459]
 gi|225876293|emb|CAS05002.1| Putative DNA polymerase beta [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
          Length = 570

 Score = 37.8 bits (86), Expect = 9.2,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|217964703|ref|YP_002350381.1| DNA polymerase X family protein [Listeria monocytogenes HCC23]
 gi|217333973|gb|ACK39767.1| DNA polymerase X family protein [Listeria monocytogenes HCC23]
 gi|307570736|emb|CAR83915.1| DNA polymerase X family protein [Listeria monocytogenes L99]
          Length = 570

 Score = 37.8 bits (86), Expect = 9.2,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|47094126|ref|ZP_00231848.1| PHP domain protein [Listeria monocytogenes str. 4b H7858]
 gi|47017493|gb|EAL08304.1| PHP domain protein [Listeria monocytogenes str. 4b H7858]
          Length = 570

 Score = 37.8 bits (86), Expect = 9.2,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|167379086|ref|XP_001734988.1| protein serine/threonine kinase [Entamoeba dispar SAW760]
 gi|165903196|gb|EDR28834.1| protein serine/threonine kinase, putative [Entamoeba dispar SAW760]
          Length = 2216

 Score = 37.8 bits (86), Expect = 9.3,   Method: Composition-based stats.
 Identities = 44/593 (7%), Positives = 129/593 (21%), Gaps = 39/593 (6%)

Query: 230  VLMAVAHSTVVSQKDRPRVTPDHYLKNRSEMVSIFSDLPEALENTVEIARRCSFILQVHA 289
                  +           ++ +       E   + S              + S   +   
Sbjct: 564  CETCNRNGYCQQCIKNYTLSSNSCTLCNIEGCGLCSSTDTKCLECDIWDYKESETCKKCD 623

Query: 290  PILPRFIEKECDDIQKEEENELRNKAVAGLEVRLAQGAIAKGYHAQDYRQRLDFELNVIA 349
              +    E +   I    ++    +     +             +Q Y      E     
Sbjct: 624  LKVSNCWECDETGICLSCKSGYYLETNKTCQSCDKIDNCISCSSSQKYC----LECQKTH 679

Query: 350  RMKFSGYFLIVADFIQWAKKNNIPVGPGRGSGAGSVTAYALTITDIDPLRFSLLFERFLN 409
             +++                 N      +G     +  Y       +P        + L 
Sbjct: 680  YLEYGNCISCNNSI------PNCKECTSKGKCYSCIEGYYYANGKCNPCSDIPGCSKCLG 733

Query: 410  PDRMSMPDFDIDFCQDRRDEVIRYVQNKYGHERVAQIITFGSLQAKAALRDV-GRALQMP 468
             +++     D            + + ++  +    +  T G+L  +    +    + +  
Sbjct: 734  NEKVCYKCQDYY----------KQIIDEEQNGYECKPCTLGTLHCQNCSINGNCSSCETS 783

Query: 469  YS-----QVDRLCKLIPNDPAHPVSLQAIADDSRFREARLADPSVDRLLEISQKLEGLYR 523
            Y+     + +   K I N  +   +             +        +   S        
Sbjct: 784  YTLTPSFECELCTKAINNCVSCSTTTFECNKCGINYGLKTKCELCLTITNNSCIDCSDSN 843

Query: 524  HASTHAAGIVIGDRPLSQLVPMY--RDVRSDLPVTQFNMKWIEKAGLIK--FDFLGLKTL 579
            H +T +    + +            +    D  V +    +     +     +     T 
Sbjct: 844  HCTTCSTNYYLNEEKCISCTTKDHCKTCHQDGTVIECEEGYYPNGKICSPCSNINENCTT 903

Query: 580  TLLQKSLDFLAQRGVKVDLSLIPFDDHET---YHLLTTKGTLGIFQLESSGMRQALEGMQ 636
                 ++    +    +  +              +      L          ++  +   
Sbjct: 904  CSRTSAVCTGCKTTHYLTTTNTCISCTTINSNCEMCLNNKCLKCKYGTYPLGKECFQCNT 963

Query: 637  PDCIEDIIALVSLYRPGPIDNIVVYNNRKNGKEKIVSIHPLIDPMLKETQGVIIYQEQVM 696
                 +   + +      +  +         K       P I+   K +    +  E+  
Sbjct: 964  ISNCTECNQMEAKCTKCNVGVVNSDGECSTCKIAHCGQCPDIEKCEKCSINYYLKGEKCH 1023

Query: 697  QI--AQLLSGYSLSEADVLRRAMGKKIKEEMDKQKERFISGASKNGISKTIAVNI---FE 751
            Q          S +E           +KE   +     +S      ++++I         
Sbjct: 1024 QCSDINNCILCSSTEEKCTLCNESYYVKEGKCELCNAVLSNCKNC-LNESICTECVEGHY 1082

Query: 752  LLAKFADYGFNKSHAAAYAVISYQTAWMKTHYPVEFLAASMTLEMDNVEKIKK 804
            L          K H    +  +   +  +  Y  +        +  +     +
Sbjct: 1083 LQGTTCLKCSEKEHCKICSTTTNTCSVCEEEYYSKEDKCIKCSDSISNCTQCQ 1135


>gi|167718987|ref|ZP_02402223.1| 200 kDa antigen p200, putative [Burkholderia pseudomallei DM98]
          Length = 579

 Score = 37.8 bits (86), Expect = 9.4,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 8/85 (9%)

Query: 869 CSRVDSKKLNRRVLESLVFA--------GALDCFGYSRMQLLQSLDNIQKYAQWVEKNRT 920
             R   +   R VLE L+ A        GA   FG  R Q+L ++D  ++  +    +  
Sbjct: 225 VRRARQRIGGREVLELLIGALELLQHALGARHRFGEPRHQVLLAVDGRERAGRHQRLHDA 284

Query: 921 NKHENIFAHEKGTFSDKITLEKFSV 945
                  A E         + + + 
Sbjct: 285 EAQHEEAAREDRVREPPHVIPRLAE 309


>gi|145340762|ref|XP_001415488.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575711|gb|ABO93780.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 931

 Score = 37.8 bits (86), Expect = 9.4,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 11/89 (12%)

Query: 873 DSKKLNRRVLESLVF-AG----------ALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTN 921
           D  K+N++  E+L   AG          ALD   ++R Q     D  +          T+
Sbjct: 778 DLSKVNKKAAEALADPAGHLELFEGFDEALDAEKHARAQAGAQADACEYGVGLAVDKLTD 837

Query: 922 KHENIFAHEKGTFSDKITLEKFSVENSSV 950
             ++I  +E+   S+ +   +   E S  
Sbjct: 838 AIDDIDVNEQQDQSEAVAEPEIEEEASPE 866


>gi|313624053|gb|EFR94137.1| DNA polymerase IV fused to PHP phosphatase [Listeria innocua FSL
           J1-023]
          Length = 570

 Score = 37.8 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|317047784|ref|YP_004115432.1| PHP domain-containing protein [Pantoea sp. At-9b]
 gi|316949401|gb|ADU68876.1| PHP domain protein [Pantoea sp. At-9b]
          Length = 245

 Score = 37.8 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 11/42 (26%)

Query: 14 LQVHS-----SYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L +H+     +YS L       + + +   +     AITD  
Sbjct: 6  LHMHTVASTHAYSTLH------DYVAQAKQNGLKLFAITDHG 41


>gi|254932891|ref|ZP_05266250.1| PHP domain-containing protein [Listeria monocytogenes HPB2262]
 gi|293584445|gb|EFF96477.1| PHP domain-containing protein [Listeria monocytogenes HPB2262]
          Length = 570

 Score = 37.8 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|254823515|ref|ZP_05228516.1| PHP domain-containing protein [Listeria monocytogenes FSL J1-194]
 gi|254852900|ref|ZP_05242248.1| PHP domain-containing protein [Listeria monocytogenes FSL R2-503]
 gi|255521230|ref|ZP_05388467.1| hypothetical protein LmonocFSL_08400 [Listeria monocytogenes FSL
           J1-175]
 gi|300764380|ref|ZP_07074374.1| PHP domain-containing protein [Listeria monocytogenes FSL N1-017]
 gi|258606235|gb|EEW18843.1| PHP domain-containing protein [Listeria monocytogenes FSL R2-503]
 gi|293592735|gb|EFG00496.1| PHP domain-containing protein [Listeria monocytogenes FSL J1-194]
 gi|300515032|gb|EFK42085.1| PHP domain-containing protein [Listeria monocytogenes FSL N1-017]
 gi|328466625|gb|EGF37760.1| hypothetical protein LM1816_08608 [Listeria monocytogenes 1816]
          Length = 570

 Score = 37.8 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|16800263|ref|NP_470531.1| hypothetical protein lin1194 [Listeria innocua Clip11262]
 gi|16413653|emb|CAC96425.1| lin1194 [Listeria innocua Clip11262]
          Length = 570

 Score = 37.8 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|46907450|ref|YP_013839.1| hypothetical protein LMOf2365_1240 [Listeria monocytogenes str. 4b
           F2365]
 gi|46880718|gb|AAT04016.1| PHP domain protein [Listeria monocytogenes serotype 4b str. F2365]
          Length = 570

 Score = 37.8 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|315282006|ref|ZP_07870513.1| bifunctional DNA polymerase/histidinol phosphatase [Listeria
           marthii FSL S4-120]
 gi|313614351|gb|EFR87988.1| bifunctional DNA polymerase/histidinol phosphatase [Listeria
           marthii FSL S4-120]
          Length = 570

 Score = 37.8 bits (86), Expect = 9.6,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 14  LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
           L +H+++S  +GA ++  +++   A     + ITD  
Sbjct: 339 LHMHTTWS--DGAYAIPEMIEACIAKGYEYMVITDHG 373


>gi|33592251|ref|NP_879895.1| hypothetical protein BP1116 [Bordetella pertussis Tohama I]
 gi|33571896|emb|CAE41414.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
          Length = 281

 Score = 37.8 bits (86), Expect = 9.9,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 14 LQVHSSYSLLEGALSLNNILDKIAADQQPAIAITDTN 50
          L  HS  ++ +G++    +  +  A+     A+TD +
Sbjct: 10 LHCHS--TVSDGSMPPAAVARRAHANGVDVWALTDHD 44


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.312    0.124    0.340 

Lambda     K      H
   0.267   0.0378    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,270,284,984
Number of Sequences: 13984884
Number of extensions: 479811496
Number of successful extensions: 1103956
Number of sequences better than 10.0: 7353
Number of HSP's better than 10.0 without gapping: 5849
Number of HSP's successfully gapped in prelim test: 1504
Number of HSP's that attempted gapping in prelim test: 1059094
Number of HSP's gapped (non-prelim): 9988
length of query: 1033
length of database: 4,792,584,752
effective HSP length: 150
effective length of query: 883
effective length of database: 2,694,852,152
effective search space: 2379554450216
effective search space used: 2379554450216
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 86 (37.9 bits)